Sequence	Length	Modifications	Modified sequence	Oxidation (M) Probabilities	Oxidation (M) Score Diffs	Acetyl (Protein N-term)	Oxidation (M)	Missed cleavages	Proteins	Leading proteins	Leading razor protein	Gene names	Protein names	Type	Raw file	Experiment	MS/MS m/z	Charge	m/z	Mass	Uncalibrated - Calibrated m/z [ppm]	Uncalibrated - Calibrated m/z [Da]	Mass error [ppm]	Mass error [Da]	Uncalibrated mass error [ppm]	Uncalibrated mass error [Da]	Max intensity m/z 0	Retention time	Retention length	Calibrated retention time	Calibrated retention time start	Calibrated retention time finish	Retention time calibration	Ion mobility index	Ion mobility length	1/K0	1/K0 length	Calibrated 1/K0	CCS	Calibrated CCS	CCS length	Match time difference	Match m/z difference	Match K0 difference	Match q-value	Match score	Number of data points	Number of scans	Number of isotopic peaks	PIF	Fraction of total spectrum	Base peak fraction	PEP	MS/MS count	MS/MS scan number	Score	Delta score	Combinatorics	Intensity	Reverse	Potential contaminant	id	Protein group IDs	Peptide ID	Mod. peptide ID	MS/MS IDs	Best MS/MS	Oxidation (M) site IDs	Taxonomy IDs
AAAAAAALQAK	11	Unmodified	_AAAAAAALQAK_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.779816	955.545079	1.6737	0.00080135	0.42186	0.00020198	2.0956	0.0010033	478.780034674409	3.6608	0.28372	3.6608	3.6164	3.9002	0	660	55	0.882057989648486	0.0366089566003003	0.882057989648486	358.392572735589	0	14.8747341956234						685	33	4	NaN	NaN	NaN	0.0009186	1	3345	77.072	61.573	1	353580			0	988	0	0	0	0		
AAAAAAGAASGLPGPVAQGLK	21	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAAAAGAASGLPGPVAQGLK_			1	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.9916	1789.96865	0.76876	0.0006888	1.2749	0.0011423	2.0436	0.0018311	895.992724633259	14.799	0.17734	14.799	14.719	14.897	0	120	76	1.2434810169581	0.0496226666999102	1.2434810169581	501.889200783006	0	20.0285168740766						1352	21	4	NaN	NaN	NaN	3.0199E-11	1	26981	106.47	104.62	1	649180			1	2594	1	1	1	1		
AAAAASHLNLDALR	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAAASHLNLDALR_			1	0	0	Q13049	Q13049	Q13049	TRIM32	E3 ubiquitin-protein ligase TRIM32	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.386239	1434.75793	1.1773	0.00084577	2.5465	0.0018294	3.7238	0.0026751	718.388179962185	13.425	0.070946	13.425	13.407	13.478	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.655269262426	0	7.30487605740649						127	9	3	NaN	NaN	NaN	5.1398E-07	1	16544	75.5	55.944	1	25645			2	1622	3	2	2	2		
AAAAELSLLEK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAAELSLLEK_			1	0	0	O43324	O43324	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.324254	1156.63395	-0.90451	-0.00052401	-0.65929	-0.00038194	-1.5638	-0.00090595	579.323875338016	16.706	0.34578	16.706	16.555	16.901	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	367.387157391997	0	9.87143483358813						643	40	4	NaN	NaN	NaN	0.00018946	1	8252	74.849	65.334	1	313800			3	195	4	3	3	3		
AAAASAAEAGIATTGTEDSDDALLK	25	Unmodified	_AAAASAAEAGIATTGTEDSDDALLK_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1160.56117	2319.10778	0.82571	0.00095829	-0.33525	-0.00038908	0.49046	0.00056921	1161.06182421241	11.03	0.053205	11.03	11.004	11.057	0	66	31	1.27913350869533	0.0197852478439124	1.27913350869533	515.372559734628	0	7.97162591471897						119	7	3	NaN	NaN	NaN	2.4627E-24	1	35803	153.56	144.43	1	17561			4	1262	5	4	4	4		
AAAASAAEAGIATTGTEDSDDALLK	25	Unmodified	_AAAASAAEAGIATTGTEDSDDALLK_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.043203	2319.10778	1.7336	0.0013419	2.0442	0.0015823	3.7778	0.0029242	774.043436822015	11.012	0.070952	11.012	11.004	11.075	0	438	19	1.03173026378327	0.0120735974282886	1.03173026378327	623.536261783141	0	7.29679652810012						84	9	3	NaN	NaN	NaN	0.068928	1	35804	26.55	26.036	1	19684			5	1262	5	4	5	5		
AAADGGGPGGASVGTEEDGGGVGHR	25	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAADGGGPGGASVGTEEDGGGVGHR_			1	0	0	A6NHR9	A6NHR9	A6NHR9	SMCHD1	Structural maintenance of chromosomes flexible hinge domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.48358	2178.95262	2.1357	0.002329	-1.231	-0.0013423	0.90476	0.00098663	1090.48130295884	5.7711	0.053198	5.7711	5.7534	5.8066	0	174	31	1.20774045859593	0.0198803914749728	1.20774045859593	486.794179162489	0	8.01302861108024						111	7	4	NaN	NaN	NaN	0.00062308	1	34430	59.171	56.426	1	16390			6	16	7	5	6	6		
AAADTLQGPMQAAYR	15	Unmodified	_AAADTLQGPMQAAYR_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.382839	1562.75113	2.1078	0.0016491	-3.6083	-0.0028231	-1.5006	-0.001174	782.378545515394	8.7422	0.25737	8.7422	8.6268	8.8842	0	429	55	1.03776581230406	0.0361858246299764	1.03776581230406	419.3270344149	0	14.6215016432819						722	25	4	NaN	NaN	NaN	3.401E-06	1	20435	117.45	100.45	1	306540			7	2063	8	6	7	7		
AAAEEEDGGPEGPNR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAEEEDGGPEGPNR_			1	0	0	Q99942	Q99942	Q99942	RNF5	E3 ubiquitin-protein ligase RNF5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.829148	1539.64374	2.9057	0.0022398	3.033	0.002338	5.9387	0.0045777	770.830865745252	5.0263	0.097521	5.0263	4.9819	5.0795	0	450	58	1.02367897599655	0.0382357127621848	1.02367897599655	413.68949978508	0	15.4518293893022						263	12	3	NaN	NaN	NaN	0.00092967	1	19704	54.27	51.392	1	50726			8	2683	9	7	8	8		
AAAEVNQDYGLDPK	14	Unmodified	_AAAEVNQDYGLDPK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.85972	1489.70489	2.1048	0.0015699	-2.4083	-0.0017963	-0.30349	-0.00022636	745.858176813867	6.7289	0.3192	6.7289	6.6225	6.9417	0	447	100	1.02569221487577	0.0664094534510982	1.02569221487577	414.626916903877	0	26.8454284222439						1244	37	5	NaN	NaN	NaN	8.869E-06	1	18209	135.21	127.65	1	593560			9	571	10	8	9	9		
AAAFEEQENETVVVK	15	Unmodified	_AAAFEEQENETVVVK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.412317	1662.81008	3.3866	0.0028191	-1.3517	-0.0011252	2.0349	0.0016939	832.411460633132	7.8374	0.15065	7.8374	7.802	7.9527	-8.8818E-16	333	52	1.10198982404297	0.034050864491993	1.10198982404297	445.042432296454	0	13.7515603362982						432	18	4	NaN	NaN	NaN	2.0317E-08	1	23419	121.86	98.909	1	97196			10	3406	11	9	10	10		
AAAGAAATHLEVAR	14	Unmodified	_AAAGAAATHLEVAR_			0	0	0	Q96S52	Q96S52	Q96S52	PIGS	GPI transamidase component PIG-S	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.854575	1307.6946	2.4949	0.0016338	-1.7756	-0.0011628	0.71926	0.00047101	654.853649317968	4.379	0.062073	4.379	4.3435	4.4056	0	438	19	1.03173026378327	0.0120735974282886	1.03173026378327	417.601591700252	0	4.88689115807551						76	8	2	NaN	NaN	NaN	0.00090743	1	12599	67.548	46.273	1	17599			11	2616	12	10	11	11		
AAAGELQEDSGLCVLAR	17	Unmodified	_AAAGELQEDSGLCVLAR_			0	0	0	Q96C19	Q96C19	Q96C19	EFHD2	EF-hand domain-containing protein D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.4358	1758.85705	2.2014	0.0019382	-0.51809	-0.00045615	1.6833	0.001482	880.435502690261	11.598	0.24833	11.598	11.536	11.784	0	309	43	1.11800162319566	0.0280013716258987	1.11800162319566	451.305032855856	0	11.3033466852343						759	29	4	NaN	NaN	NaN	1.1519E-13	1	26109	137.4	132.25	1	247240			12	2488	13	11	12	12		
AAAHCAHVFTTVSQITAIEAQHLLK	25	Unmodified	_AAAHCAHVFTTVSQITAIEAQHLLK_			0	0	0	P13807	P13807	P13807	GYS1	Glycogen [starch] synthase, muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.477911	2716.4119	1.5127	0.0013712	0.75645	0.00068571	2.2692	0.0020569	906.814301576571	14.435	0.070927	14.435	14.4	14.471	0	237	25	1.16593139812432	0.015950245277476	1.16593139812432	704.028209907502	0	9.63128932658674						191	9	5	NaN	NaN	NaN	9.1548E-10	1	37656	104.86	102.67	1	38588			13	686	14	12	13	13		
AAAIGIDLGTTYSCVGVFQHGK	22	Unmodified	_AAAIGIDLGTTYSCVGVFQHGK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.715927	2264.12595	0.41649	0.00031475	-1.1327	-0.00085603	-0.71625	-0.00054128	755.714581685079	14.719	0.18625	14.719	14.631	14.817	1.7764E-15	465	22	1.01360860968299	0.0141043571552784	1.01360860968299	612.672809901501	0	8.52533813113644						154	22	2	NaN	NaN	NaN	0.034431	1	35313	14.004	13.67	1	37008			14	618	15	13	14	14		
AAAIGIDLGTTYSCVGVFQHGK	22	Unmodified	_AAAIGIDLGTTYSCVGVFQHGK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.07025	2264.12595	0.4966	0.00056268	-1.0411	-0.0011796	-0.54446	-0.00061691	1133.06888503664	14.24	0.053205	14.24	14.223	14.276	0	57	22	1.28506705146927	0.0138430389183961	1.28506705146927	517.838127436496	0	5.57827184452105						72	7	3	NaN	NaN	NaN	2.6129E-11	1	35314	119.79	112.8	1	11330			15	618	15	13	15	15		
AAAIGIDLGTTYSCVGVFQHGK	22	Unmodified	_AAAIGIDLGTTYSCVGVFQHGK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.715927	2264.12595	1.7972	0.0013581	-0.3968	-0.00029987	1.4004	0.0010583	756.050302556643	14.249	0.35468	14.249	14.161	14.515	1.7764E-15	465	94	1.01360860968299	0.0624794835061888	1.01360860968299	612.672807149855	0	37.7655440012311						1776	41	7	NaN	NaN	NaN	1.5763E-23	1	35315	207.06	192.04	1	1249800			16	618	15	13	16	16		
AAALATVNAWAEQTGMK	17	Unmodified	_AAALATVNAWAEQTGMK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.937979	1731.8614	1.5912	0.0013795	0.056402	4.8897E-05	1.6476	0.0014284	866.938005994034	13.708	0.097544	13.708	13.673	13.77	0	231	31	1.16991841121525	0.0199323285473259	1.16991841121525	472.319910365635	0	8.04708733754524						263	12	4	NaN	NaN	NaN	0.0001055	1	25376	93.772	86.196	1	66447			17	1713	16	14	17	17		
AAALEFLNR	9	Unmodified	_AAALEFLNR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.779816	1003.54508	0.22259	0.00011191	-1.0243	-0.00051501	-0.80174	-0.0004031	502.77954424991	10.977	0.23056	10.977	10.915	11.146	0	708	52	0.849494101904619	0.0346400029303776	0.849494101904619	344.927179735131	0	14.0651694814633						696	27	4	NaN	NaN	NaN	7.1997E-05	1	4371	101.41	86.877	1	348890			18	934	17	15	18	18		
AAALEFLNRFEEAK	14	Unmodified	_AAALEFLNRFEEAK_			0	0	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.950862	1607.83076	-0.45535	-0.0002445	-0.75722	-0.00040659	-1.2126	-0.00065109	536.950423952728	14.143	0.23942	14.143	14.09	14.329	0	714	103	0.845418525735192	0.0694005502561968	0.845418525735192	512.279784177421	0	42.0531344237123						935	28	5	NaN	NaN	NaN	1.9444E-05	1	21853	134.2	119.74	1	379930			19	934	18	16	19	19		
AAALEFLNRFEEAK	14	Unmodified	_AAALEFLNRFEEAK_			0	0	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.922655	1607.83076	2.3217	0.0018688	0.07112	5.7246E-05	2.3928	0.0019261	804.92290694504	14.143	0.27485	14.143	14.081	14.356	0	285	55	1.13399579921816	0.0359720544761399	1.13399579921816	458.097544199976	0	14.5315439675427						884	32	5	NaN	NaN	NaN	1.1241E-31	1	21854	244.45	203.91	1	857110			20	934	18	16	20	20		
AAALVLQTIWGYK	13	Unmodified	_AAALVLQTIWGYK_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.411195	1432.80784	0.73461	0.00052702	0.12329	8.8447E-05	0.85789	0.00061546	717.412037147802	17.131	0.088656	17.131	17.078	17.167	0	411	34	1.04982941439551	0.0221089774592802	1.04982941439551	424.539228672541	0	8.94062226548112						245	11	4	NaN	NaN	NaN	2.6923E-07	1	16485	83.358	44.348	1	52386			21	276	19	17	21	21		
AAAMDVDTPSGTNSGAGK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAMDVDTPSGTNSGAGK_			1	0	0	P62877	P62877	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.380691	1690.74683	2.9077	0.002461	-0.34204	-0.00028949	2.5656	0.0021715	846.380208705107	8.1922	0.25725	8.1922	8.1213	8.3785	0	342	43	1.09598084995137	0.0280554094154091	1.09598084995137	442.555238916421	0	11.3287275204538						815	30	4	NaN	NaN	NaN	4.3927E-14	1	24221	123.99	121.51	1	230410			22	1409	20	18	22	22		
AAAMDVDTPSGTNSGAGK	18	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AAAM(Oxidation (M))DVDTPSGTNSGAGK_	AAAM(1)DVDTPSGTNSGAGK	AAAM(55)DVDTPSGTNSGAGK	1	1	0	P62877	P62877	P62877	RBX1	E3 ubiquitin-protein ligase RBX1;E3 ubiquitin-protein ligase RBX1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.378148	1706.74174	2.3848	0.0020375	-0.85092	-0.000727	1.5339	0.0013105	854.377003891652	5.4076	0.079796	5.4076	5.3721	5.4519	0	351	19	1.08996939197032	0.0120237446098677	1.08996939197032	440.094288184298	0	4.85479809283811						74	10	2	NaN	NaN	NaN	0.00089766	1	24669	54.556	53.937	1	14802			23	1409	20	19	23	23	505	
AAAPAPEEEMDECEQALAAEPK	22	Unmodified	_AAAPAPEEEMDECEQALAAEPK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1179.01722	2356.01989	1.8796	0.002216	-0.70042	-0.00082581	1.1791	0.0013902	1179.51806631184	11.465	0.2927	11.465	11.358	11.651	0	63	124	1.28111162701928	0.0812475294601742	1.28111162701928	516.121380500409	0	32.7321883455219						3462	34	6	NaN	NaN	NaN	7.9197E-08	1	36102	77.325	74.25	1	1093000			24	859	21	20	24	24		
AAAPAPEEEMDECEQALAAEPK	22	Unmodified	_AAAPAPEEEMDECEQALAAEPK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.34724	2356.01989	1.4496	0.0011399	0.21357	0.00016794	1.6632	0.0013078	786.681958720646	11.474	0.21288	11.474	11.385	11.598	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	616.178978618657	0	12.1702739876301						615	25	4	NaN	NaN	NaN	0.00025674	1	36103	61.503	61.198	1	143010			25	859	21	20	25	25		
AAAPAPEEEMDECEQALAAEPK	22	Oxidation (M)	_AAAPAPEEEM(Oxidation (M))DECEQALAAEPK_	AAAPAPEEEM(1)DECEQALAAEPK	AAAPAPEEEM(45)DECEQALAAEPK	0	1	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1187.01468	2372.01481	1.9037	0.0022598	-0.67269	-0.00079849	1.2311	0.0014613	1187.51539634417	8.1302	0.088652	8.1302	8.0947	8.1833	0	90	79	1.26329880838669	0.0514980648775307	1.26329880838669	508.925001547739	0	20.7462023818203						509	11	3	NaN	NaN	NaN	1.47E-05	1	36220	44.853	44.548	1	96079			26	859	21	21	26	26	291	
AAAPGVEDEPLLR	13	Unmodified	_AAAPGVEDEPLLR_			0	0	0	P31350	P31350	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.356616	1336.69868	0.92501	0.00061916	-1.0658	-0.00071341	-0.1408	-9.4246E-05	669.355915854706	9.3544	0.12417	9.3544	9.2923	9.4164	0	516	64	0.979317271586824	0.0423774677017295	0.979317271586824	396.297053553047	0	17.1487484949823						628	15	4	NaN	NaN	NaN	0.0071886	1	13499	48.785	46.114	1	214210			27	923	22	22	27	27		
AAATGAVAASAASGQAEGK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAATGAVAASAASGQAEGK_			1	0	0	Q9NWH9	Q9NWH9	Q9NWH9	SLTM	SAFB-like transcription modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.90519	1629.79583	2.3905	0.0019504	-0.82272	-0.00067126	1.5678	0.0012792	815.904402656926	8.1479	0.15087	8.1479	8.1036	8.2544	0	207	43	1.18585551256002	0.0278784414113458	1.18585551256002	478.992043492958	0	11.2606902608156						416	18	4	NaN	NaN	NaN	1.4948E-14	1	22472	141.88	125.59	1	122540			28	3080	23	23	28	28		
AAATGPSFWLGNETLK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAATGPSFWLGNETLK_			1	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.933219	1703.85189	1.136	0.00096896	1.1612	0.00099039	2.2972	0.0019594	852.934148699723	18.009	0.15958	18.009	17.938	18.098	0	243	49	1.16194328902838	0.0319092676377801	1.16194328902838	469.16141548914	0	12.8841031343975						688	19	5	NaN	NaN	NaN	4.2062E-12	1	24602	152.23	132.67	1	272400			29	672	24	24	29	29		
AAAVAAAGAGEPQSPDELLPK	21	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAAVAAAGAGEPQSPDELLPK_			1	0	0	Q9NS69	Q9NS69	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.01547	2004.01638	0.51203	0.00051357	0.51837	0.00051993	1.0304	0.0010335	1003.01597896625	15.296	0.27487	15.296	15.154	15.429	0	60	58	1.28308947459206	0.037594555723218	1.28308947459206	517.450379002473	0	15.1613098639078						1282	32	4	NaN	NaN	NaN	7.6648E-17	1	31708	132.93	129.85	1	373290			30	3033	25	25	30	30		
AAAVLPVLDLAQR	13	Unmodified	_AAAVLPVLDLAQR_			0	0	0	P19404	P19404	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.900994	1335.78744	0.44267	0.0002961	0.052506	3.5121E-05	0.49517	0.00033122	669.402606038907	15.65	0.22166	15.65	15.526	15.748	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.384571293903	0	11.4349466841376						347	26	4	NaN	NaN	NaN	0.0065094	1	13475	39.293	32.602	1	130710			31	768	26	26	31	31		
AAAVPVEFQEHHLSEVQNMASEEK	24	Unmodified	_AAAVPVEFQEHHLSEVQNMASEEK_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	894.093903	2679.25988	2.0255	0.001811	-0.2694	-0.00024087	1.7561	0.0015701	894.428308515679	10.179	0.062086	10.179	10.152	10.214	0	411	28	1.04982941439551	0.0180866667822672	1.04982941439551	633.966730188279	0	10.9221030033353						163	8	4	NaN	NaN	NaN	0.055285	1	37541	12.615	10.164	1	31775			32	239	27	27	32	32		
AAAVPVEFQEHHLSEVQNMASEEK	24	Unmodified	_AAAVPVEFQEHHLSEVQNMASEEK_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	670.822246	2679.25988	0.64764	0.00043445	1.4024	0.00094078	2.0501	0.0013752	671.073930750449	10.179	0.088678	10.179	10.143	10.232	0	621	31	0.908462957275599	0.020293211090572	0.908462957275599	731.463810960765	0	16.3394108720254						318	11	5	NaN	NaN	NaN	0.00051783	1	37543	60.734	60.178	1	102240			33	239	27	27	33	33		
AAAYNLVQHGITNLCVIGGDGSLTGANIFR	30	Unmodified	_AAAYNLVQHGITNLCVIGGDGSLTGANIFR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1034.86449	3101.57165	0.95298	0.00098621	0.5557	0.00057508	1.5087	0.0015613	1035.19981886272	17.965	0.062042	17.965	17.938	18	0	312	28	1.11600111266355	0.0180070752591535	1.11600111266355	673.452295978724	0	10.866392550627						206	8	5	NaN	NaN	NaN	0.0063945	1	38366	35.777	33.528	1	43173			34	744	28	28	34	34		
AAAYSAQVQPVDGATR	16	Unmodified	_AAAYSAQVQPVDGATR_			0	0	0	Q9H7E9	Q9H7E9	Q9H7E9	C8orf33	UPF0488 protein C8orf33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.904993	1603.79543	1.8112	0.0014543	-1.3638	-0.001095	0.44748	0.00035929	802.904417434905	5.8775	0.062066	5.8775	5.8598	5.9219	0	414	40	1.04781950764076	0.0261360051694259	1.04781950764076	423.294217477898	0	10.558325909679						155	8	3	NaN	NaN	NaN	1.1549E-06	1	21706	110.58	94.966	1	31516			35	2917	29	29	35	35		
AADAEAEVASLNR	13	Unmodified	_AADAEAEVASLNR_			0	0	0	P06753	P06753	P06753	TPM3	Tropomyosin alpha-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.82568	1315.63681	2.2079	0.0014546	0.2956	0.00019475	2.5035	0.0016494	658.826354311759	6.0106	0.27496	6.0106	5.9573	6.2323	0	555	46	0.953040030838688	0.0303492849683255	0.953040030838688	385.726696648053	0	12.2833554285865						805	32	5	NaN	NaN	NaN	5.8178E-24	1	12828	229.38	182.93	1	693610			36	548	30	30	36	36		
AADEEAFEDNSEEYIR	16	Unmodified	_AADEEAFEDNSEEYIR_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.397592	1886.78063	3.1749	0.0029984	-0.55176	-0.00052108	2.6232	0.0024773	944.396954911228	9.7268	0.20393	9.7268	9.6824	9.8864	0	276	91	1.13998907770044	0.0599534649854137	1.13998907770044	459.936637324721	0	24.1886484886153						1478	24	5	NaN	NaN	NaN	3.8917E-70	1	29295	281.19	273.23	1	710650			37	1264	31	31	37	37		
AADEEAFEDNSEEYIRR	17	Unmodified	_AADEEAFEDNSEEYIRR_			0	0	1	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.967857	2042.88174	1.0366	0.00070695	0.24032	0.00016389	1.277	0.00087084	682.302524159718	8.2721	0.06213	8.2721	8.2454	8.3076	0	606	22	0.918606045818476	0.0141944207177085	0.918606045818476	555.615092786943	0	8.58543705435727						152	8	4	NaN	NaN	NaN	0.0002	1	32390	69.641	66.746	1	32148			38	1264	32	32	38	38		
AADIGVAMGQTGTDVCK	17	Unmodified	_AADIGVAMGQTGTDVCK_			0	0	0	P98194	P98194	P98194	ATP2C1	Calcium-transporting ATPase type 2C member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.397829	1692.78111	2.1557	0.0018267	-0.57291	-0.00048549	1.5827	0.0013412	847.396661520597	8.3608	0.062121	8.3608	8.3342	8.3963	0	318	28	1.11199926528787	0.0180145146238793	1.11199926528787	449.019062067723	0	7.27415989607289						94	8	2	NaN	NaN	NaN	0.0023578	1	24276	63.79	52.435	1	23521			39	1492	33	33	39	39		
AADPPAENSSAPEAEQGGAE	20	Unmodified	_AADPPAENSSAPEAEQGGAE_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.405948	1896.79734	3.1806	0.0030196	-4.3508	-0.0041307	-1.1703	-0.0011111	949.903110292718	6.9949	0.36362	6.9949	6.9328	7.2964	0	315	97	1.11400032671325	0.0640472694683973	1.11400032671325	449.433979038398	0	25.8393273982727						1988	42	6	NaN	NaN	NaN	0.057494	1	29525	23.432	6.4402	1	1964600			40	1440	34	34	40	40		
AADPPAENSSAPEAEQGGAE	20	Unmodified	_AADPPAENSSAPEAEQGGAE_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.405948	1896.79734	3.5983	0.0034162	-2.1213	-0.0020139	1.477	0.0014023	949.403771399736	4.5741	0.12418	4.5741	4.5297	4.6539	0	339	79	1.09798411722691	0.0520383849842079	1.09798411722691	442.972368046068	0	20.9944445134295						575	15	3	NaN	NaN	NaN	7.2698E-16	1	29526	144.38	135.11	1	103830			41	1440	34	34	41	41		
AADSDDGAVSAPAASDGGVSK	21	Unmodified	_AADSDDGAVSAPAASDGGVSK_			0	0	0	Q96GM8	Q96GM8	Q96GM8	TOE1	Target of EGR1 protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.416316	1846.81808	3.0994	0.0028651	-2.3061	-0.0021318	0.79335	0.00073338	924.414415587586	4.6716	0.062074	4.6716	4.6361	4.6982	0	339	25	1.09798411722691	0.0160250356219411	1.09798411722691	443.059409007339	0	6.46643489699176						67	8	2	NaN	NaN	NaN	0.0012779	1	28398	62.494	61.755	1	12326			42	2545	35	35	42	42		
AADSICDGDLVDSQIR	16	Unmodified	_AADSICDGDLVDSQIR_			0	0	0	P35251	P35251	P35251	RFC1	Replication factor C subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.90179	1733.78903	2.2307	0.001936	3.0347	0.0026338	5.2654	0.0045699	867.905596301003	10.214	0.088673	10.214	10.17	10.259	0	354	28	1.08796502040166	0.018041831774515	1.08796502040166	439.229767840352	0	7.28379077739959						209	11	4	NaN	NaN	NaN	0.00012873	1	25431	81.48	59.476	1	49514			43	966	36	36	43	43		
AADTIGYPVMIR	12	Unmodified	_AADTIGYPVMIR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.84483	1305.67511	0.98329	0.00064292	0.43166	0.00028224	1.415	0.00092516	653.845380113376	11.766	0.23943	11.766	11.669	11.908	0	495	70	0.993446994398923	0.0464326791463908	0.993446994398923	402.112605751951	0	18.7943249200692						1114	28	3	NaN	NaN	NaN	0.00017019	1	12528	109.88	70.553	1	527730			44	922	37	37	44	44		
AADTIGYPVMIR	12	Oxidation (M)	_AADTIGYPVM(Oxidation (M))IR_	AADTIGYPVM(1)IR	AADTIGYPVM(79)IR	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.842287	1321.67002	1.573	0.0010411	0.98004	0.00064863	2.5531	0.0016897	661.843216104327	10.135	0.28375	10.135	10.019	10.303	0	486	58	0.999498404980629	0.0383309147863334	0.999498404980629	404.510736112973	0	15.513047823627						798	33	4	NaN	NaN	NaN	0.0017272	1	13036	78.816	69.302	1	245030			45	922	37	38	45	45	310	
AAEAAAAPAESAAPAAGEEPSK	22	Unmodified	_AAEAAAAPAESAAPAAGEEPSK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.971258	1965.92796	3.6946	0.0036354	-2.3091	-0.0022721	1.3854	0.0013632	984.470490356678	4.9376	0.32807	4.9376	4.8667	5.1947	0	273	160	1.14198628764525	0.105867039683555	1.14198628764525	460.607005082706	0	42.7002500933374						2309	38	6	NaN	NaN	NaN	1.0834E-37	1	31029	264.63	245	1	1717400			46	1468	38	39	46	46		
AAEAAAAPAESAAPAAGEEPSK	22	Unmodified	_AAEAAAAPAESAAPAAGEEPSK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.316598	1965.92796	2.0739	0.0013611	0.72777	0.00047765	2.8016	0.0018388	656.317503812227	4.9287	0.11526	4.9287	4.8755	4.9908	0	528	40	0.971237000454584	0.0262699700789047	0.971237000454584	587.603750511537	0	15.8934770163878						285	14	4	NaN	NaN	NaN	0.0078912	1	31030	77.325	77.173	1	65229			47	1468	38	39	47	47		
AAEAHVDAHYYEQNEQPTGTCAACITGDNR	30	Unmodified	_AAEAHVDAHYYEQNEQPTGTCAACITGDNR_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	838.11128	3348.41602	2.5	0.0020953	-0.73647	-0.00061724	1.7635	0.001478	838.361655290814	7.3053	0.079813	7.3053	7.2787	7.3585	0	375	37	1.07392668217569	0.0240839792188599	1.07392668217569	863.79755604748	0	19.371603978591						235	10	5	NaN	NaN	NaN	1.0523E-06	1	38578	56.542	56.487	1	43564			48	1272	39	40	48	48		
AAEDDEDDDVDTK	13	Unmodified	_AAEDDEDDDVDTK_			0	0	0	P06454	P06454	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.278622	1436.54269	2.9526	0.0021238	-1.8373	-0.0013215	1.1154	0.00080227	719.277451437254	2.4813	0.70052	2.4813	2.4281	3.1286	0	552	73	0.955063035883597	0.048535355991568	0.955063035883597	386.207175228905	0	19.6266654995088						1951	80	4	NaN	NaN	NaN	1.3143E-24	1	16573	223.96	213.87	1	758470			49	539	40	41	49	49		
AAEDLFVNIR	10	Unmodified	_AAEDLFVNIR_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.308938	1146.60332	0.4873	0.00027986	1.5879	0.00091192	2.0752	0.0011918	574.309700028457	12.307	0.14188	12.307	12.254	12.396	0	603	43	0.920633820089869	0.0283868792767229	0.920633820089869	373.181150687237	0	11.5066903276191						318	17	3	NaN	NaN	NaN	0.06118	1	7973	23.053	0	1	121070			50	3340	41	42	50	50		
AAEILYYFALR	11	Unmodified	_AAEILYYFALR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.363713	1328.71287	0.74423	0.00049518	-0.58041	-0.00038618	0.16382	0.000109	665.363064964095	17.752	0.088656	17.752	17.716	17.805	0	444	25	1.02770517576159	0.01610257649452	1.02770517576159	415.903599498116	0	6.51657662451839						138	11	3	NaN	NaN	NaN	0.0078139	1	13256	39.01	31.009	1	26110			51	1901	42	43	51	51		
AAELEMELNEHSLVIDTLK	19	Unmodified	_AAELEMELNEHSLVIDTLK_			0	0	0	Q9UHV9	Q9UHV9	Q9UHV9	PFDN2	Prefoldin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.036555	2154.08784	0.97645	0.0007021	0.26538	0.00019082	1.2418	0.00089292	719.037229465835	15.109	0.14189	15.109	15.065	15.207	0	501	28	0.98941132619024	0.0181642753536437	0.98941132619024	598.232975509368	0	10.982761370464						353	17	5	NaN	NaN	NaN	2.307E-07	1	34096	59.997	52.349	1	81536			52	3223	43	44	52	52		
AAELFGLTAEEVYLVHDELDK	21	Unmodified	_AAELFGLTAEEVYLVHDELDK_			0	0	0	Q86Y79	Q86Y79	Q86Y79	PTRH1	Probable peptidyl-tRNA hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.065279	2361.17401	0.46083	0.00036316	0.12613	9.9398E-05	0.58696	0.00046256	788.399457125459	18.789	0.079834	18.789	18.754	18.834	0	447	22	1.02569221487577	0.0140907270067592	1.02569221487577	619.821375408864	0	8.51496547129204						140	10	4	NaN	NaN	NaN	1.0727E-06	1	36140	52.662	51.787	1	26883			53	2193	44	45	53	53		
AAELIANSLATAGDGLIELR	20	Unmodified	_AAELIANSLATAGDGLIELR_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.700383	1997.07932	0.12423	8.2823E-05	-0.25532	-0.00017022	-0.13109	-8.7396E-05	667.034370104584	18.222	0.16847	18.222	18.178	18.346	0	534	43	0.967195187796614	0.028292695105214	0.967195187796614	585.094508010659	0	17.1153669204998						499	20	5	NaN	NaN	NaN	3.9128E-06	1	31585	110.9	91.707	1	243540			54	960	45	46	54	54		
AAELIANSLATAGDGLIELR	20	Unmodified	_AAELIANSLATAGDGLIELR_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.546936	1997.07932	-0.46541	-0.0004652	1.1002	0.0010997	0.63482	0.00063453	1000.04919234285	18.222	0.062069	18.222	18.195	18.257	0	72	58	1.27517645957152	0.0376151518538832	1.27517645957152	514.271467271608	0	15.1699783903169						257	8	4	NaN	NaN	NaN	2.8033E-07	1	31586	92.593	91.005	1	47245			55	960	45	46	55	55		
AAELIANSLATAGDGLIELR	20	Unmodified	_AAELIANSLATAGDGLIELR_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.546936	1997.07932	0.95779	0.00095736	0.53222	0.00053198	1.49	0.0014893	1000.04887439013	18.222	0.15073	18.222	18.178	18.328	0	165	109	1.21370334790578	0.0715891570952549	1.21370334790578	489.479710297859	0	28.8715030208299						1197	18	5	NaN	NaN	NaN	8.3066E-29	1	31587	212.5	199.81	1	463190			56	960	45	46	56	56		
AAELTATQVEEEEEEEDFRK	20	Unmodified	_AAELTATQVEEEEEEEDFRK_			0	0	1	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.027441	2352.06049	1.8612	0.0014611	0.53804	0.00042237	2.3992	0.0018835	785.362724279194	8.973	0.097542	8.973	8.9198	9.0174	0	423	31	1.04178812298108	0.0201060050174831	1.04178812298108	629.56232560066	0	12.1502472509712						261	12	5	NaN	NaN	NaN	0.0020306	1	36056	56.473	52.9	1	69587			57	354	46	47	57	57		
AAEPVEDNCINFVAMK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAEPVEDNCINFVAMK_			1	0	0	Q14116	Q14116	Q14116	IL18	Interleukin-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.426587	1848.83862	1.7052	0.001578	0.89438	0.00082768	2.5996	0.0024057	925.427445384238	15.251	0.15958	15.251	15.198	15.358	0	204	58	1.18784641916898	0.0378428307662209	1.18784641916898	479.316798776781	0	15.2702438689055						350	19	2	NaN	NaN	NaN	1.5399E-08	1	28449	102.57	94.192	1	203550			58	1719	47	48	58	58		
AAESLADPTEYENLFPGLK	19	Unmodified	_AAESLADPTEYENLFPGLK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.00985	2064.00515	1.8047	0.0018643	-0.21846	-0.00022567	1.5863	0.0016386	1033.511363282	17.699	0.25711	17.699	17.583	17.841	0	177	58	1.2057522832638	0.0377753473176443	1.2057522832638	486.164238580457	0	15.2311741148715						1501	30	6	NaN	NaN	NaN	5.0182E-08	1	32777	120.21	115.9	1	410740			59	973	48	49	59	59		
AAETQTLNFGPEWLR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAETQTLNFGPEWLR_			1	0	0	Q6Y7W6	Q6Y7W6	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.941576	1773.8686	1.4823	0.0013162	-0.77589	-0.00068895	0.70643	0.00062727	888.4420937968	18.718	0.088658	18.718	18.674	18.763	0	273	37	1.14198628764525	0.0239648752236348	1.14198628764525	460.956439745498	0	9.67328914676375						269	11	3	NaN	NaN	NaN	3.3308E-08	1	26509	89.382	78.595	1	59220			60	2094	49	50	60	60		
AAEVWMDEYK	10	Unmodified	_AAEVWMDEYK_			0	0	0	Q10471;Q8N4A0	Q10471	Q10471	GALNT2;GALNT4	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form;Polypeptide N-acetylgalactosaminyltransferase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.278989	1240.54342	0.96557	0.00059989	2.0111	0.0012495	2.9767	0.0018493	621.279893850609	9.5228	0.15953	9.5228	9.4874	9.647	0	546	37	0.959108205975751	0.024267665443817	0.959108205975751	388.426788499191	0	9.82809999328998						294	19	4	NaN	NaN	NaN	0.00042159	1	10623	78.816	32.369	1	86825			61	1586	50	51	61	61		
AAFDDAIAELDTLSEESYK	19	Unmodified	_AAFDDAIAELDTLSEESYK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.66003	2086.95826	-0.4771	-0.00033238	0.5509	0.00038379	0.073796	5.1411E-05	696.994737706559	19.126	0.053204	19.126	19.1	19.153	0	540	25	0.963152256458504	0.0161739645709869	0.963152256458504	582.475702804857	0	9.78136251818273						124	7	3	NaN	NaN	NaN	0.0016224	1	33131	37.886	31.983	1	31150			62	1375	51	52	62	62		
AAFDDAIAELDTLSEESYK	19	Unmodified	_AAFDDAIAELDTLSEESYK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.48641	2086.95826	1.39	0.0014518	1.3155	0.001374	2.7055	0.0028259	1044.98930185763	19.126	0.29259	19.126	19.073	19.366	0	183	115	1.20177511391933	0.0755974694916306	1.20177511391933	484.52500839678	0	30.4789674174152						2040	34	7	NaN	NaN	NaN	7.8051E-47	1	33132	278.06	246.26	1	2719800			63	1375	51	52	63	63		
AAFGEEVDAVDTGISR	16	Unmodified	_AAFGEEVDAVDTGISR_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.894291	1635.77403	2.2347	0.00183	-8.4623	-0.0069297	-6.2276	-0.0050997	818.887967437662	11.216	0.33698	11.216	11.083	11.42	0	366	97	1.07994477139643	0.0641532271439396	1.07994477139643	436.199053518075	0	25.9120444873604						1555	39	4	NaN	NaN	NaN	1.7114E-06	1	22654	110.58	77.481	1	627230			64	70	52	53	64	64		
AAFGISDSYVDGSSFDPQR	19	Unmodified	_AAFGISDSYVDGSSFDPQR_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.95815	2017.90175	2.0171	0.0020372	2.8655	0.002894	4.8826	0.0049312	1010.46288629674	13.629	0.23055	13.629	13.487	13.717	1.7764E-15	213	73	1.18187287897418	0.0477785102555515	1.18187287897418	476.608702223989	0	19.2674306790581						930	27	4	NaN	NaN	NaN	3.5945E-05	1	31946	57.62	53.065	1	223840			65	3318	53	54	65	65		
AAFGLSEAGFNTACVTK	17	Unmodified	_AAFGLSEAGFNTACVTK_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.422162	1742.82977	2.6072	0.0022746	-0.28708	-0.00025045	2.3201	0.0020241	872.422061857539	12.742	0.23058	12.742	12.662	12.893	0	201	151	1.18983705239708	0.0997715713595304	1.18983705239708	480.3374670488	0	40.277804236947						1249	27	4	NaN	NaN	NaN	1.8572E-14	1	25676	162.52	149.3	1	372500			66	919	54	55	66	66		
AAFQSLLDAQADEAVLDHPDLK	22	Unmodified	_AAFQSLLDAQADEAVLDHPDLK_			0	0	0	Q9UBI1	Q9UBI1	Q9UBI1	COMMD3	COMM domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.732411	2366.1754	0.86579	0.00068374	0.80161	0.00063306	1.6674	0.0013168	790.067570581488	15.925	0.079818	15.925	15.89	15.97	0	417	34	1.04580932352505	0.0221181322684503	1.04580932352505	631.970243338644	0	13.3657265406413						264	10	5	NaN	NaN	NaN	3.8973E-06	1	36184	100.6	99.507	1	62045			67	3174	55	56	67	67		
AAFTVSLDPGPLEQFPHSMEPQLR	24	Unmodified	_AAFTVSLDPGPLEQFPHSMEPQLR_			0	0	0	Q9UKD2	Q9UKD2	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.779367	2666.31627	0.3544	0.00031534	-1.5075	-0.0013414	-1.1531	-0.001026	890.112419925507	17.007	0.23056	17.007	16.874	17.105	0	492	43	0.995464410099171	0.0282379706445135	0.995464410099171	601.152079643149	0	17.0526586441803						853	27	5	NaN	NaN	NaN	1.5698E-06	1	37490	81.409	77.455	1	206110			68	3260	56	57	68	68		
AAFVAYALAFPR	12	Unmodified	_AAFVAYALAFPR_			0	0	0	Q6XQN6	Q6XQN6	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.858598	1295.70264	0.88094	0.00057161	0.27612	0.00017916	1.1571	0.00075077	648.858775975747	16.182	0.11529	16.182	16.129	16.245	0	450	28	1.02367897599655	0.0181216541002778	1.02367897599655	414.382844011458	0	7.33560299697933						222	14	3	NaN	NaN	NaN	3.9561E-05	1	12238	81.642	74.895	1	56092			69	2093	57	58	69	69		
AAFVLPEFAR	10	Unmodified	_AAFVLPEFAR_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.811116	1119.60768	0.41482	0.00023263	-0.82117	-0.00046052	-0.40636	-0.00022789	560.810958775392	14.631	0.27491	14.631	14.533	14.808	0	645	64	0.892219381832517	0.0426482764776017	0.892219381832517	361.76690567539	0	17.2925351408547						982	32	4	NaN	NaN	NaN	0.0079527	1	7260	60.892	41.636	1	572920			70	771	58	59	70	70		
AAGCDFTNVVK	11	Unmodified	_AAGCDFTNVVK_			0	0	0	P52758	P52758	P52758	HRSP12	Ribonuclease UK114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.284605	1180.55466	1.4176	0.00083818	1.3926	0.00082343	2.8102	0.0016616	591.285018430206	7.2521	0.12413	7.2521	7.19	7.3142	0	606	49	0.918606045818476	0.0324556427464261	0.918606045818476	372.231907961073	0	13.1514764992004						268	15	3	NaN	NaN	NaN	0.0083908	1	8888	40.533	26.885	1	125400			71	1221	59	60	71	71		
AAGDTTVIENSDVSPETESSEK	22	Unmodified	_AAGDTTVIENSDVSPETESSEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.51388	2265.01321	1.8083	0.0020497	-0.079084	-8.9643E-05	1.7292	0.0019601	1134.01516156175	7.0836	0.10649	7.0836	7.0392	7.1457	8.8818E-16	126	73	1.23951419873743	0.0476410235457427	1.23951419873743	499.48068729945	0	19.1976592188416						404	13	3	NaN	NaN	NaN	2.9758E-08	1	35321	108.41	96.729	1	87462			72	2167	60	61	72	72		
AAGGDHGSPDSYR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAGGDHGSPDSYR_			1	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.28418	1330.55381	2.2011	0.0014666	-0.29894	-0.00019918	1.9022	0.0012674	666.284008723207	3.3237	0.12415	3.3237	3.2794	3.4035	0	501	25	0.98941132619024	0.0161471385123466	0.98941132619024	400.400698711028	0	6.53451741594898						188	15	3	NaN	NaN	NaN	2.5903E-05	1	13300	92.445	75.049	1	38510			73	913	61	62	73	73		
AAGGDHGSPDSYR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAGGDHGSPDSYR_			1	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.28418	1330.55381	1.9981	0.0013313	0.78413	0.00052245	2.7822	0.0018538	666.284939493067	3.3237	0.13301	3.3237	3.2794	3.4124	0	555	28	0.953040030838688	0.0182120890547127	0.953040030838688	385.681748218918	0	7.3701734639194						145	16	2	NaN	NaN	NaN	0.033738	1	13301	42.061	36.565	1	45379			74	913	61	62	74	74		
AAGGFTHDELLK	12	Unmodified	_AAGGFTHDELLK_			0	0	0	P56182	P56182	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.824952	1257.63535	1.4717	0.00092693	-0.11991	-7.5521E-05	1.3518	0.00085141	629.825174462378	6.5515	0.1064	6.5515	6.5161	6.6225	0	552	40	0.955063035883597	0.0262954306323098	0.955063035883597	386.730693705862	0	10.647726639655						323	13	4	NaN	NaN	NaN	0.00063205	1	11140	83.775	66.305	1	111240			75	1283	62	63	75	75		
AAGGIELFVGGIGPDGHIAFNEPGSSLVSR	30	Unmodified	_AAGGIELFVGGIGPDGHIAFNEPGSSLVSR_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	975.50155	2923.48282	1.6833	0.001642	-0.60256	-0.0005878	1.0807	0.0010542	975.835209852096	17.823	0.10638	17.823	17.779	17.885	0	408	67	1.0518390438467	0.0442393363640883	1.0518390438467	634.90630013556	0	26.703547026221						587	13	5	NaN	NaN	NaN	1.2641E-06	1	38108	58.691	57.73	1	121690			76	1092	63	64	76	76		
AAGIDEQENWHEGK	14	Unmodified	_AAGIDEQENWHEGK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.574343	1582.7012	-0.93342	-0.00049338	1.4585	0.00077092	0.52507	0.00027754	528.575228492776	4.6805	0.1064	4.6805	4.645	4.7514	0	798	28	0.788241307691771	0.0184154953193295	0.788241307691771	477.698032768887	0	11.1603462044751						245	13	4	NaN	NaN	NaN	4.1403E-05	1	21044	73.655	66.098	1	85156			77	880	64	65	77	77		
AAGIDEQENWHEGK	14	Unmodified	_AAGIDEQENWHEGK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.357876	1582.7012	2.633	0.0020863	-0.89859	-0.000712	1.7344	0.0013743	792.35713196643	4.6805	0.10635	4.6805	4.6539	4.7603	0	411	34	1.04982941439551	0.0221120284306979	1.04982941439551	424.154564622712	0	8.93375405884206						191	13	3	NaN	NaN	NaN	0.00020726	1	21046	58.313	33.624	1	46400			78	880	64	65	78	78		
AAGLATMISTMRPDIDNMDEYVR	23	Unmodified	_AAGLATMISTMRPDIDNMDEYVR_			0	0	1	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.406436	2569.19748	0.38382	0.00032909	5.7028	0.0048896	6.0866	0.0052187	857.744342846375	17.22	0.15962	17.22	17.131	17.291	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	597.613788164444	0	17.0677950533454						376	19	5	NaN	NaN	NaN	0.00096595	1	37107	47.844	44.403	1	89834			79	343	65	66	79	79		
AAGMNMEEEEELQQNLWGLK	20	Unmodified	_AAGMNMEEEEELQQNLWGLK_			0	0	0	Q13144	Q13144	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1160.53284	2319.05113	-0.016093	-1.8677E-05	0.63297	0.00073458	0.61687	0.0007159	1161.03473657207	16.44	0.044331	16.44	16.422	16.466	0	111	22	1.24942920585258	0.0138753046846334	1.24942920585258	503.4045419295	0	5.59046592330441						78	6	3	NaN	NaN	NaN	0.038652	1	35800	21.668	21.363	1	11854			80	1633	66	67	80	80		
AAGPLLTDECR	11	Unmodified	_AAGPLLTDECR_			0	0	0	Q9BQ69	Q9BQ69	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.795337	1201.57612	1.1853	0.00071331	3.4712	0.0020889	4.6565	0.0028023	601.796522295975	6.2234	0.24831	6.2234	6.1702	6.4185	-8.8818E-16	603	46	0.920633820089869	0.0304166222504839	0.920633820089869	372.978186830236	0	12.322745883242						542	29	4	NaN	NaN	NaN	0.00063143	1	9502	95.311	85.797	1	197800			81	2693	67	68	81	81		
AAGTAAALAFLSQESR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAGTAAALAFLSQESR_			1	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.415194	1604.81583	1.0866	0.00087298	1.3014	0.0010456	2.388	0.0019185	803.416347886791	19.268	0.12414	19.268	19.224	19.348	0	261	58	1.14997238118939	0.0379209212295002	1.14997238118939	464.559014646211	0	15.3190686046154						659	15	5	NaN	NaN	NaN	1.1986E-33	1	21744	264.96	226.86	1	504030			82	346	68	69	82	82		
AAGTLYTYPENWR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAGTLYTYPENWR_			1	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.37808	1582.74161	2.3919	0.0018953	2.6397	0.0020917	5.0316	0.0039869	792.380298657804	15.145	0.266	15.145	15.074	15.34	0	312	73	1.11600111266355	0.0480354266011112	1.11600111266355	450.889297058003	0	19.4073818460305						1550	31	6	NaN	NaN	NaN	8.7489E-17	1	21050	191.55	172	1	2732500			83	859	69	70	83	83		
AAGVEAAAEVAATEIK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAGVEAAAEVAATEIK_			1	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.904128	1541.7937	2.1087	0.0016277	1.0726	0.00082798	3.1813	0.0024557	771.905120875686	18.364	0.26605	18.364	18.293	18.559	0	306	91	1.12000185836644	0.0600277743505091	1.12000185836644	452.609919398526	0	24.258143776729						1185	31	5	NaN	NaN	NaN	7.9802E-13	1	19781	196.38	181.23	1	1233300			84	1206	70	71	84	84		
AAGVLEGALGPHVVTNLYLYPIK	23	Unmodified	_AAGVLEGALGPHVVTNLYLYPIK_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	799.117649	2394.33112	0.24517	0.00019592	-0.23493	-0.00018774	0.010243	8.185E-06	799.450140201251	16.954	0.097584	16.954	16.883	16.98	0	369	64	1.07793901817685	0.0421673255783088	1.07793901817685	651.34114190212	0	25.4794691814635						216	12	2	NaN	NaN	NaN	0.070968	1	36317	17.813	14.907	1	63217			85	2516	71	72	85	85		
AAGVNVEPFWPGLFAK	16	Unmodified	_AAGVNVEPFWPGLFAK_			0	0	0	P05386	P05386	P05386	RPLP1	60S acidic ribosomal protein P1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.303236	1701.88788	-1.4595	-0.00082942	0.65045	0.00036965	-0.80902	-0.00045977	568.637775132085	18.488	0.088729	18.488	18.444	18.532	0	735	19	0.831145085810763	0.0122403302193221	0.831145085810763	503.393295404013	0	7.41350730592035						83	11	2	NaN	NaN	NaN	0.063771	1	24561	17.415	17.415	1	17944			86	528	72	73	86	86		
AAGVNVEPFWPGLFAK	16	Unmodified	_AAGVNVEPFWPGLFAK_			0	0	0	P05386	P05386	P05386	RPLP1	60S acidic ribosomal protein P1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.951215	1701.88788	2.3133	0.0019708	1.3235	0.0011276	3.6368	0.0030984	851.952492236158	18.47	0.34586	18.47	18.364	18.71	0	339	142	1.09798411722691	0.0940760358290917	1.09798411722691	443.340551458949	0	37.9857239728377						3323	40	7	NaN	NaN	NaN	2.588E-17	1	24564	178.52	168.27	1	4477500			87	528	72	73	87	87		
AAGVVLEMIR	10	Unmodified	_AAGVVLEMIR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.804977	1057.5954	-0.22759	-0.00012058	-2.3579	-0.0012492	-2.5855	-0.0013698	529.804756177558	12.343	0.12415	12.343	12.29	12.414	0	675	61	0.871889544407995	0.0406596895306061	0.871889544407995	353.775785987365	0	16.4979769673224						341	15	3	NaN	NaN	NaN	0.0067053	1	5664	60.892	50.19	1	95281			88	3325	73	74	88	88		
AAGYDLYSAYDYTIPPMEK	19	Unmodified	_AAGYDLYSAYDYTIPPMEK_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.49826	2166.98197	1.4268	0.0015474	1.11	0.0012037	2.5367	0.0027511	1085.00138965465	15.402	0.42574	15.402	15.18	15.606	0	153	46	1.22165005014568	0.0297980967949332	1.22165005014568	492.417829527963	0	12.0108980031355						530	49	3	NaN	NaN	NaN	4.3224E-15	1	34265	165.02	158.82	1	133390			89	946	74	75	89	89		
AAHIFFTDTCPEPLFSELGR	20	Unmodified	_AAHIFFTDTCPEPLFSELGR_			0	0	0	Q15833	Q15833	Q15833	STXBP2	Syntaxin-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.040411	2307.0994	0.44204	0.00034039	-1.853	-0.0014269	-1.411	-0.0010865	770.373611593388	16.635	0.10639	16.635	16.59	16.697	0	576	43	0.938871150116794	0.0283593603705795	0.938871150116794	567.433541362906	0	17.1397878014069						357	13	5	NaN	NaN	NaN	0.001109	1	35690	67.887	66.155	1	74951			90	1872	75	76	90	90		
AAHLCAEAALR	11	Unmodified	_AAHLCAEAALR_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	394.873118	1181.59753	-2.0657	-0.00081568	3.3483	0.0013222	1.2826	0.00050647	394.874422365718	4.6893	0.06205	4.6893	4.6627	4.7248	0	792	22	0.792332785124922	0.0143191751131978	0.792332785124922	481.586693206312	0	8.7033180018164						94	8	3	NaN	NaN	NaN	0.027061	1	8917	45.489	33.422	1	21013			91	3319	76	77	91	91		
AAHLCAEAALR	11	Unmodified	_AAHLCAEAALR_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.806039	1181.59753	1.9394	0.0011477	1.2472	0.00073808	3.1865	0.0018858	591.806862441171	4.6805	0.088642	4.6805	4.6539	4.7425	0	570	88	0.942920803299286	0.058691577113264	0.942920803299286	382.080690370172	0	23.7823985046095						325	11	2	NaN	NaN	NaN	0.012464	1	8918	49.16	43.412	1	78291			92	3319	76	77	92	92		
AAHSEGNTTAGLDMR	15	Unmodified	_AAHSEGNTTAGLDMR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.851903	1529.68925	3.6284	0.0027788	-3.0984	-0.0023729	0.53008	0.00040596	765.849740383935	3.7583	0.33695	3.7583	3.714	4.0509	0	465	58	1.01360860968299	0.0382938495713495	1.01360860968299	409.643636529262	0	15.4762219314793						909	39	5	NaN	NaN	NaN	4.705E-06	1	19409	70.806	68.135	1	268180			93	1461	77	78	93	93		
AAHSEGNTTAGLDMR	15	Unmodified	_AAHSEGNTTAGLDMR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.903694	1529.68925	0.30297	0.00015479	1.7589	0.00089861	2.0618	0.0010534	510.904781815677	3.7583	0.23053	3.7583	3.714	3.9445	0	786	85	0.796423123669906	0.0572010823828489	0.796423123669906	482.801332506545	0	34.6759881455959						732	27	5	NaN	NaN	NaN	0.00013851	1	19410	84.309	79.159	1	311380			94	1461	77	78	94	94		
AAHSEGNTTAGLDMR	15	Oxidation (M)	_AAHSEGNTTAGLDM(Oxidation (M))R_	AAHSEGNTTAGLDM(1)R	AAHSEGNTTAGLDM(89)R	0	1	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.235333	1545.68417	0.39401	0.0002034	0.38274	0.00019758	0.77675	0.00040099	516.235977633224	2.4281	0.15076	2.4281	2.4104	2.5611	0	813	25	0.778007628350577	0.0163773081327158	0.778007628350577	471.593925221702	0	9.92720218341157						188	18	3	NaN	NaN	NaN	0.00018996	1	19900	88.734	63.913	1	35241			95	1461	77	79	95	95	523	
AAHVFFTDSCPDALFNELVK	20	Unmodified	_AAHVFFTDSCPDALFNELVK_			0	0	0	P61764	P61764	P61764	STXBP1	Syntaxin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.036778	2280.0885	0.27836	0.00021184	-1.145	-0.00087135	-0.8666	-0.00065951	761.37008842992	17.716	0.070949	17.716	17.681	17.752	0	588	22	0.93076847747433	0.0141845894763903	0.93076847747433	562.576324866732	0	8.57346849457633						161	9	4	NaN	NaN	NaN	8.7809E-06	1	35460	65.173	62.098	1	31154			96	1350	78	80	96	96		
AAIAASEVLVDSAEEGSLAAAAELAAQK	28	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAIAASEVLVDSAEEGSLAAAAELAAQK_			1	0	0	O95926	O95926	O95926	SYF2	Pre-mRNA-splicing factor SYF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	900.1309	2697.37087	0.38609	0.00034753	1.6382	0.0014746	2.0243	0.0018221	900.46687655785	20.297	0.0088806	20.297	20.297	20.306	0	189	22	1.1977968526266	0.0139267826599245	1.1977968526266	723.295628683181	0	8.40975746217305						48	2	4	NaN	NaN	NaN	0.00028555	1	37594	63.421	61.357	1	8232.5			97	463	79	81	97	97		
AAIDWFDGK	9	Unmodified	_AAIDWFDGK_			0	0	0	Q92804;P35637	Q92804;P35637	Q92804	TAF15;FUS	TATA-binding protein-associated factor 2N;RNA-binding protein FUS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.750724	1021.4869	-1.6622	-0.00085062	-1.1416	-0.00058423	-2.8038	-0.0014349	511.750304027029	12.059	0.15961	12.059	12.006	12.165	0	753	22	0.81889964927511	0.0142932978262608	0.81889964927511	332.425660183773	0	5.8022481390779						208	19	3	NaN	NaN	NaN	0.02502	1	4766	34.781	10.66	1	48807			98	2434;977	80	82	98	98		
AAIDWFDGK	9	Unmodified	_AAIDWFDGK_			0	0	0	Q92804;P35637	Q92804;P35637	Q92804	TAF15;FUS	TATA-binding protein-associated factor 2N;RNA-binding protein FUS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.750724	1021.4869	-0.67122	-0.0003435	-0.69269	-0.00035448	-1.3639	-0.00069798	511.750514687279	12.298	0.46997	12.298	12.121	12.591	0	753	82	0.81889964927511	0.055085360835903	0.81889964927511	332.425658195822	0	22.361454604406						1393	54	5	NaN	NaN	NaN	0.001029	1	4769	91.783	33.357	1	1805200			99	2434;977	80	82	99	99		
AAIGCGIVESILNWVK	16	Unmodified	_AAIGCGIVESILNWVK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.468915	1728.92328	1.363	0.0011797	-1.7047	-0.0014754	-0.34167	-0.00029571	865.469215015332	20.146	0.035476	20.146	20.137	20.173	0	273	34	1.14198628764525	0.0219693125101945	1.14198628764525	461.049370530401	0	8.86957909511904						73	5	3	NaN	NaN	NaN	2.1864E-06	1	25306	97.175	93.67	1	19184			100	652	81	83	100	100		
AAILPTSIFLTNK	13	Unmodified	_AAILPTSIFLTNK_			0	0	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.911027	1387.8075	0.9026	0.00062722	0.51616	0.00035868	1.4188	0.00098591	694.911342563237	16.2	0.19509	16.2	16.147	16.342	0	450	40	1.02367897599655	0.0261757253352226	1.02367897599655	414.092602765784	0	10.5884505665389						506	23	4	NaN	NaN	NaN	2.8222E-05	1	15086	81.335	71.821	1	267420			101	115	82	84	101	101		
AAIPSSGSLVATHDYYR	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAIPSSGSLVATHDYYR_			1	0	0	Q9H3Y8	Q9H3Y8	Q9H3Y8	PPDPF	Pancreatic progenitor cell differentiation and proliferation factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.45759	1848.90063	0.16978	0.00015712	-0.46402	-0.00042943	-0.29424	-0.00027231	925.957826025493	11.784	0.062081	11.784	11.766	11.828	0	84	22	1.26725910986255	0.0138601067580197	1.26725910986255	511.361085415506	0	5.59279407076002						104	8	3	NaN	NaN	NaN	0.002507	1	28461	40.224	38.514	1	18181			102	2887	83	85	102	102		
AAISSGIEDPVPTLHLTER	19	Unmodified	_AAISSGIEDPVPTLHLTER_			0	0	0	O75175	O75175	O75175	CNOT3	CCR4-NOT transcription complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.356616	2005.04802	-0.24019	-0.00016077	-0.35538	-0.00023788	-0.59557	-0.00039865	669.690667892599	12.662	0.12413	12.662	12.6	12.724	0	678	25	0.869855008346864	0.016279679599705	0.869855008346864	526.195173746082	0	9.84795023687604						275	15	4	NaN	NaN	NaN	2.6768E-06	1	31722	98.865	92.01	1	63683			103	310	84	86	103	103		
AALAHPFFQDVTK	13	Unmodified	_AALAHPFFQDVTK_			0	0	0	P24941	P24941	P24941	CDK2	Cyclin-dependent kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.257626	1443.75105	-0.59271	-0.00028584	-0.50741	-0.0002447	-1.1001	-0.00053054	482.257328856713	9.5849	0.15073	9.5849	9.514	9.6647	0	735	61	0.831145085810763	0.0408124648651854	0.831145085810763	504.118739239384	0	24.7541959693104						370	18	3	NaN	NaN	NaN	0.061008	1	16785	25.613	22.268	1	108900			104	834	85	87	104	104		
AALAHPFFQDVTK	13	Unmodified	_AALAHPFFQDVTK_			0	0	0	P24941	P24941	P24941	CDK2	Cyclin-dependent kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.882801	1443.75105	1.8405	0.0013305	0.79735	0.00057639	2.6379	0.0019069	722.883476985501	9.5849	0.19507	9.5849	9.5317	9.7268	0	411	34	1.04982941439551	0.0221059271192692	1.04982941439551	424.508456431518	0	8.93874078084582						342	23	4	NaN	NaN	NaN	1.2432E-05	1	16787	115.04	103.02	1	89484			105	834	85	87	105	105		
AALAHSEEVTASQVAATK	18	Unmodified	_AALAHSEEVTASQVAATK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.462872	1782.91119	3.4053	0.0030391	-2.0256	-0.0018078	1.3797	0.0012314	892.460966490324	5.6559	0.13308	5.6559	5.6115	5.7445	0	234	79	1.16792504164217	0.0518668425281119	1.16792504164217	471.407933974954	0	20.9349403482287						663	16	5	NaN	NaN	NaN	1.1583E-26	1	26767	194.55	173.19	1	223950			106	1816	86	88	106	106		
AALAHSEEVTASQVAATK	18	Unmodified	_AALAHSEEVTASQVAATK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.311007	1782.91119	1.8557	0.0011047	0.74067	0.00044093	2.5964	0.0015457	595.311130992131	5.6471	0.16856	5.6471	5.6115	5.78	0	603	34	0.920633820089869	0.0223086119453004	0.920633820089869	557.388750819257	0	13.5065311238391						335	20	5	NaN	NaN	NaN	1.827E-10	1	26769	126.21	101.47	1	136190			107	1816	86	88	107	107		
AALAPLPPLPAQFK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AALAPLPPLPAQFK_			1	0	0	Q9NP79	Q9NP79	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.43467	1474.85479	0.72422	0.00053479	-0.028344	-2.093E-05	0.69587	0.00051386	738.434500718532	19.011	0.19508	19.011	18.958	19.153	0	429	70	1.03776581230406	0.0462406443446659	1.03776581230406	419.546427090631	0	18.694099276696						829	23	4	NaN	NaN	NaN	0.00016633	1	17745	43.272	29.998	1	219790			108	2979	87	89	108	108		
AALCHFCIDMLNAK	14	Unmodified	_AALCHFCIDMLNAK_			0	0	0	P54920	P54920	P54920	NAPA	Alpha-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.263289	1662.76804	-0.80019	-0.00044431	0.41334	0.00022951	-0.38685	-0.0002148	555.263277984624	12.547	0.070936	12.547	12.511	12.582	0	699	34	0.85560534332665	0.0224047758340703	0.85560534332665	518.306308640729	0	13.5723049757143						176	9	4	NaN	NaN	NaN	0.0055187	1	23416	46.068	43.589	1	37353			109	1260	88	90	109	109		
AALDCSTSHLDEFYSDPHAVAGALK	25	Unmodified	_AALDCSTSHLDEFYSDPHAVAGALK_			0	0	0	Q68EM7	Q68EM7	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	669.565609	2674.23333	0.57028	0.00038184	2.2517	0.0015077	2.822	0.0018895	669.817995940474	12.157	0.088683	12.157	12.121	12.21	0	492	31	0.995464410099171	0.0201727650206149	0.995464410099171	801.522221489067	0	16.2425891562407						246	11	5	NaN	NaN	NaN	0.066642	1	37524	4.4403	4.1849	1	56299			110	2025	89	91	110	110		
AALDCSTSHLDEFYSDPHAVAGALK	25	Unmodified	_AALDCSTSHLDEFYSDPHAVAGALK_			0	0	0	Q68EM7	Q68EM7	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	892.418387	2674.23333	1.8156	0.0016203	2.3996	0.0021415	4.2152	0.0037617	892.753888905904	12.165	0.18621	12.165	12.015	12.201	0	318	28	1.11199926528787	0.0180120343234753	1.11199926528787	671.516113923768	0	10.87713964418						250	22	3	NaN	NaN	NaN	0.00034805	1	37525	59.625	57.174	1	64972			111	2025	89	91	111	111		
AALDSLSLFTSLGLSEQK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AALDSLSLFTSLGLSEQK_			1	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.509488	1921.00442	-0.54823	-0.00052713	0.85888	0.00082582	0.31065	0.00029869	962.013390673492	20.226	0.017763	20.226	20.226	20.244	0	57	34	1.28506705146927	0.0217593046214073	1.28506705146927	518.401934272522	0	8.77780314363019						79	3	4	NaN	NaN	NaN	3.0035E-10	1	30087	90.156	65.412	1	19116			112	1101	90	92	112	112		
AALEAQNALHNMK	13	Unmodified	_AALEAQNALHNMK_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.861543	1409.70853	2.5892	0.0018276	-1.8358	-0.0012958	0.75337	0.00053178	705.860446637151	5.9396	0.16855	5.9396	5.8953	6.0638	0	375	37	1.07392668217569	0.0240806587960416	1.07392668217569	434.351936010685	0	9.73947378538293						413	20	4	NaN	NaN	NaN	1.8301E-07	1	15748	130.79	99.87	1	168300			113	2437	91	93	113	113		
AALEEVYPDLTPEETRR	17	Unmodified	_AALEEVYPDLTPEETRR_			0	0	1	Q9H0D6	Q9H0D6	Q9H0D6	XRN2	5-3 exoribonuclease 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.668971	1987.98508	1.0196	0.00067666	1.1247	0.00074646	2.1443	0.0014231	664.004451272979	10.454	0.1153	10.454	10.41	10.525	0	552	22	0.955063035883597	0.0141590759980551	0.955063035883597	577.773510654167	0	8.56565351149504						174	14	3	NaN	NaN	NaN	0.054811	1	31423	11.209	9.9384	1	39918			114	2843	92	94	114	114		
AALEQDLAFWYGPR	14	Unmodified	_AALEQDLAFWYGPR_			0	0	0	P09601	P09601	P09601	HMOX1	Heme oxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.909547	1635.80454	0.096673	7.9166E-05	3.5761	0.0029285	3.6728	0.0030077	819.41299605855	16.732	0.13301	16.732	16.679	16.812	0	387	34	1.06589869032374	0.0220815471089169	1.06589869032374	430.525608609449	0	8.91892596773636						230	16	3	NaN	NaN	NaN	3.2461E-05	1	22665	105.94	101.96	1	47330			115	606	93	95	115	115		
AALETDENLLLCAPTGAGK	19	Unmodified	_AALETDENLLLCAPTGAGK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.490772	1942.96699	2.2491	0.0021872	-3.5629	-0.0034649	-1.3138	-0.0012776	972.988380395185	13.327	0.19513	13.327	13.274	13.469	0	222	109	1.17589687683038	0.071697360550536	1.17589687683038	474.323744510926	0	28.9206997636967						1021	23	4	NaN	NaN	NaN	4.2573E-08	1	30587	118.87	112.84	1	297420			116	350	94	96	116	116		
AALEYLGSFDHYAT	14	Unmodified	_AALEYLGSFDHYAT_			0	0	0	P10586;P23468	P10586	P10586	PTPRF;PTPRD	Receptor-type tyrosine-protein phosphatase F;Receptor-type tyrosine-protein phosphatase delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.364638	1556.71472	1.5014	0.0011701	1.5609	0.0012165	3.0623	0.0023867	779.366040865037	14.409	0.16845	14.409	14.285	14.453	0	417	58	1.04580932352505	0.0381987855157915	1.04580932352505	422.591524377786	0	15.4353978659205						380	20	3	NaN	NaN	NaN	0.045175	1	20252	34.953	32.651	1	84266			117	627	95	97	117	117		
AALFALQNLFEEK	13	Unmodified	_AALFALQNLFEEK_			0	0	0	Q99707	Q99707	Q99707	MTR	Methionine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.403566	1492.79258	0.27722	0.0002072	0.4381	0.00032744	0.71533	0.00053464	747.905583579654	18.816	0.079812	18.816	18.772	18.851	0	402	34	1.05585747106793	0.0220998283327687	1.05585747106793	426.812815282113	0	8.93348790573037						153	10	3	NaN	NaN	NaN	0.00039668	1	18336	76.85	64.254	1	30424			118	2666	96	98	118	118		
AALGPLVTGLYDVQAFK	17	Unmodified	_AALGPLVTGLYDVQAFK_			0	0	0	P11172	P11172	P11172	UMPS	Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.990537	1761.96652	1.5743	0.0013885	-0.85394	-0.00075317	0.72039	0.00063538	882.490570861742	18.266	0.23053	18.266	18.142	18.373	0	252	61	1.15595906938629	0.039924995069111	1.15595906938629	466.620920615434	0	16.116347410645						681	27	3	NaN	NaN	NaN	0.00013319	1	26209	58.313	56.176	1	149720			119	643	97	99	119	119		
AALGPSSQNVTEYVVR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AALGPSSQNVTEYVVR_			1	0	0	P35269	P35269	P35269	GTF2F1	General transcription factor IIF subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.946858	1731.87916	2.2554	0.0019553	0.22276	0.00019312	2.4781	0.0021484	866.947358972422	14.302	0.15959	14.302	14.232	14.391	0	228	52	1.17191150690002	0.0338872942601851	1.17191150690002	473.124524572564	0	13.6809903235027						673	19	5	NaN	NaN	NaN	1.0034E-09	1	25382	121.69	108.52	1	251540			120	968	98	100	120	120		
AALHLYSNTLNFQISEVEPK	20	Unmodified	_AALHLYSNTLNFQISEVEPK_			0	0	0	P41227	P41227	P41227	NAA10	N-alpha-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.730342	2273.1692	1.0203	0.00077414	-0.60118	-0.00045614	0.41913	0.00031801	759.064455062666	14.604	0.10642	14.604	14.542	14.648	0	450	25	1.02367897599655	0.016107024389808	1.02367897599655	618.744809282769	0	9.73560849433545						205	13	4	NaN	NaN	NaN	1.8891E-07	1	35400	115.79	105.03	1	41428			121	1032	101	101	121	121		
AALLELWELR	10	Unmodified	_AALLELWELR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.350606	1212.68666	-0.027909	-1.695E-05	0.76091	0.00046214	0.733	0.00044519	607.351088340705	18.009	0.13302	18.009	17.956	18.089	0	567	61	0.944945209309785	0.0404741262657745	0.944945209309785	382.787694478207	0	16.3956569403767						547	16	4	NaN	NaN	NaN	5.3796E-05	1	9813	86.205	62.084	1	207720			122	1703	102	102	122	122		
AALLETLSLLLAK	13	Unmodified	_AALLETLSLLLAK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.429053	1354.84355	0.90042	0.00061087	-0.88193	-0.00059833	0.018486	1.2542E-05	678.428374582477	20.119	0.035472	20.119	20.111	20.146	0	408	34	1.0518390438467	0.0221089774592802	1.0518390438467	425.585858553185	0	8.94553991771403						101	5	4	NaN	NaN	NaN	0.0071575	1	14049	36.514	30.648	1	45839			123	2420	103	103	123	123		
AALLNQHYQVNFK	13	Unmodified	_AALLNQHYQVNFK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.412257	1544.80996	1.9346	0.0014963	1.0431	0.00080677	2.9778	0.002303	773.412766156202	9.2923	0.15964	9.2923	9.2213	9.381	0	360	49	1.08395544855938	0.0320854269031785	1.08395544855938	438.035401082356	0	12.965987542303						370	19	4	NaN	NaN	NaN	1.4807E-05	1	19890	117.3	109.74	1	133590			124	565	104	104	124	124		
AALMESQGQQQEER	14	Unmodified	_AALMESQGQQQEER_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.870293	1603.72603	3.5564	0.0028553	-3.0781	-0.0024713	0.47829	0.00038401	802.868130695978	3.8115	0.15073	3.8115	3.776	3.9268	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	414.355475875881	0	11.3870035682228						385	18	4	NaN	NaN	NaN	9.4538E-06	1	21698	92.707	81.352	1	89331			125	1782	105	105	125	125		
AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR	39	Unmodified	_AALPSHVVTMLDNFPTNLHPMSQLSAAVTALNSESNFAR_			0	0	0	O75390	O75390	O75390	CS	Citrate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1038.77148	4151.05683	1.4154	0.0014702	-0.7803	-0.00081056	0.63505	0.00065968	1039.27232949803	19.871	0.04435	19.871	19.853	19.898	0	399	76	1.0578662689527	0.050213057525148	1.0578662689527	850.198284209171	0	40.3558149132045						408	6	7	NaN	NaN	NaN	2.0979E-17	1	38780	70.168	68.276	1	96316			126	329	106	106	126	126		
AALQEELQLCK	11	Unmodified	_AALQEELQLCK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.839745	1301.66494	1.9322	0.0012595	1.3939	0.00090859	3.3261	0.0021681	652.343218504328	9.647	0.35473	9.647	9.5228	9.8776	0	522	91	0.975277694896658	0.0605350879270684	0.975277694896658	394.771037969937	0	24.5032769842055						1090	41	4	NaN	NaN	NaN	2.0491E-07	1	12402	114.39	67.947	1	542770			127	1127	107	107	127	127		
AALSALESFLK	11	Unmodified	_AALSALESFLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.329339	1148.64412	-0.49256	-0.00028338	-1.2705	-0.00073096	-1.7631	-0.0010143	575.328282053381	16.963	0.30152	16.963	16.847	17.149	0	618	112	0.910492137470517	0.075079790602772	0.910492137470517	369.062415341907	0	30.4331336020141						1424	35	5	NaN	NaN	NaN	6.8199E-06	1	8038	120.33	97.946	1	674940			128	1465	108	108	128	128		
AALSASEGEEVPQDK	15	Unmodified	_AALSASEGEEVPQDK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.867742	1529.72093	2.3776	0.0018209	-0.34977	-0.00026788	2.0278	0.0015531	765.867618655644	5.2302	0.29262	5.2302	5.1859	5.4785	0	441	70	1.02971785871157	0.0463237128819054	1.02971785871157	416.154002108097	0	18.7214374745648						1111	34	4	NaN	NaN	NaN	5.7598E-20	1	19416	212.93	169.65	1	542620			129	458	109	109	129	129		
AALTAEHFAALQSLLK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AALTAEHFAALQSLLK_			1	0	0	Q9P000	Q9P000	Q9P000	COMMD9	COMM domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.480337	1724.94612	1.1791	0.0010182	0.2363	0.00020404	1.4154	0.0012222	863.480844633151	19.188	0.14188	19.188	19.162	19.304	0	273	43	1.14198628764525	0.0279628687340265	1.14198628764525	461.057818442076	0	11.2895394588988						306	17	4	NaN	NaN	NaN	1.2361E-08	1	25199	119.79	115.54	1	103800			130	3138	110	110	130	130		
AALVLEDGSVLR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AALVLEDGSVLR_			1	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.861534	1283.70852	0.81903	0.00052652	-0.86571	-0.00055653	-0.04668	-3.0009E-05	642.861003508716	18.302	0.15959	18.302	18.248	18.408	0	498	49	0.991429299781895	0.0322942844341361	0.991429299781895	401.367808795562	0	13.0739389917176						639	19	5	NaN	NaN	NaN	1.2862E-05	1	11882	129.28	80.121	1	416040			131	867	111	111	131	131		
AAMDNSEIAGEK	12	Unmodified	_AAMDNSEIAGEK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.28226	1234.54997	2.7872	0.0017233	-0.91764	-0.00056736	1.8696	0.0011559	618.281904351019	3.9622	0.27488	3.9622	3.909	4.1839	0	603	55	0.920633820089869	0.0364923641742785	0.920633820089869	372.86507819648	0	14.7797397015988						545	32	4	NaN	NaN	NaN	0.0023598	1	10450	72.922	50.536	1	196460			132	1915	112	112	132	132		
AANAAENDFSVSQAEMSSR	19	Unmodified	_AANAAENDFSVSQAEMSSR_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.936893	1983.85923	2.5625	0.0025444	-1.6422	-0.0016306	0.92033	0.00091383	993.436766228151	8.6357	0.14197	8.6357	8.6002	8.7422	0	276	55	1.13998907770044	0.0359522652426962	1.13998907770044	459.772315380486	0	14.5000128134135						491	17	4	NaN	NaN	NaN	3.4991E-15	1	31343	123.24	120.53	1	98714			133	2308	113	113	133	133		
AANATTNPSQLLPLELVDK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AANATTNPSQLLPLELVDK_			1	0	0	Q9Y4Y9	Q9Y4Y9	Q9Y4Y9	LSM5	U6 snRNA-associated Sm-like protein LSm5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.04677	2036.07899	0.48987	0.0004992	0.56014	0.00057081	1.05	0.00107	1019.54902629234	19.348	0.11532	19.348	19.304	19.419	0	108	67	1.25141139212444	0.0436170873749733	1.25141139212444	504.620417703986	0	17.5881992034812						671	14	5	NaN	NaN	NaN	7.2047E-11	1	32272	125.14	119.75	1	236630			134	3418	114	114	134	134		
AANDAGYFNDEMAPIEVK	18	Unmodified	_AANDAGYFNDEMAPIEVK_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.946198	1953.87784	1.8079	0.001768	1.6736	0.0016367	3.4815	0.0034047	978.449393972248	13.026	0.14187	13.026	12.963	13.105	-1.7764E-15	216	55	1.17988115188462	0.0358634154604045	1.17988115188462	475.912022939695	0	14.4657201905679						691	17	5	NaN	NaN	NaN	2.2598E-19	1	30779	182.22	145.08	1	352250			135	1056	115	115	135	135		
AANDAGYFNDEMAPIEVK	18	Oxidation (M)	_AANDAGYFNDEM(Oxidation (M))APIEVK_	AANDAGYFNDEM(1)APIEVK	AANDAGYFNDEM(59)APIEVK	0	1	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.943655	1969.87276	2.159	0.0021286	0.030013	2.9591E-05	2.189	0.0021582	985.943949332004	10.871	0.079815	10.871	10.835	10.915	0	231	37	1.16991841121525	0.0239220824983335	1.16991841121525	471.866472862879	0	9.64856060372443						200	10	3	NaN	NaN	NaN	0.0019284	1	31105	58.794	57.083	1	35635			136	1056	115	116	136	136	376	
AANVLLSEHGEVK	13	Unmodified	_AANVLLSEHGEVK_			0	0	0	Q9Y6E0	Q9Y6E0	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.869891	1365.72523	2.0885	0.0014282	0.00046497	3.1798E-07	2.0889	0.0014286	683.869352101425	5.5583	0.12426	5.5583	5.5228	5.6471	0	453	46	1.02166545906632	0.0302027620184235	1.02166545906632	413.344019861547	0	12.2193923195034						226	15	3	NaN	NaN	NaN	0.00043541	1	14373	70.195	64.329	1	51991			137	3462	116	117	137	137		
AANVTLLTSLVEGEAVHLAR	20	Unmodified	_AANVTLLTSLVEGEAVHLAR_			0	0	0	P05549;Q92481;Q6VUC0	P05549	P05549	TFAP2A;TFAP2B;TFAP2E	Transcription factor AP-2-alpha;Transcription factor AP-2-beta;Transcription factor AP-2-epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.719778	2063.1375	0.18863	0.00012991	-1.7685	-0.001218	-1.5799	-0.0010881	689.05256169799	18.461	0.079877	18.461	18.426	18.506	0	516	25	0.979317271586824	0.0161560731115115	0.979317271586824	592.296815857016	0	9.77128754728903						127	10	3	NaN	NaN	NaN	0.0013569	1	32759	37.886	37.787	1	29256			138	534	117	118	138	138		
AAPAPGLISVFSSSQELGAALAQLVAQR	28	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAPAPGLISVFSSSQELGAALAQLVAQR_			1	0	0	O95336	O95336	O95336	PGLS	6-phosphogluconolactonase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	932.174774	2793.50249	0.15737	0.00014669	1.7033	0.0015877	1.8606	0.0017344	932.510946794422	20.377	0.017729	20.377	20.368	20.385	0	150	28	1.22363604450103	0.0178739508793972	1.22363604450103	738.768348033565	0	10.791369887596						76	3	5	NaN	NaN	NaN	0.0005567	1	37880	49.485	48.93	1	16775			139	421	118	119	139	139		
AAPCIYWLPLTDSQIVQK	18	Unmodified	_AAPCIYWLPLTDSQIVQK_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.702959	2102.08705	0.085347	5.9888E-05	-0.28652	-0.00020105	-0.20117	-0.00014116	702.370242516399	17.956	0.15962	17.956	17.903	18.062	0	522	40	0.975277694896658	0.026255437790293	0.975277694896658	589.780650467515	0	15.8774770091602						291	19	4	NaN	NaN	NaN	0.0090933	1	33342	58.476	53.66	1	61509			140	3269	120	120	140	140		
AAPCIYWLPLTDSQIVQK	18	Unmodified	_AAPCIYWLPLTDSQIVQK_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.0508	2102.08705	1.5762	0.0016583	-1.2106	-0.0012736	0.36568	0.00038472	1053.05119717888	17.956	0.18619	17.956	17.867	18.053	0	123	94	1.24149774378079	0.0615658945089459	1.24149774378079	500.516353308167	0	24.820614586001						930	22	5	NaN	NaN	NaN	0.0030912	1	33343	52.863	42.537	1	232450			141	3269	120	120	141	141		
AAPEASSPPASPLQHLLPGK	20	Unmodified	_AAPEASSPPASPLQHLLPGK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.689818	1967.04763	-1.1176	-0.00073395	-0.58639	-0.00038507	-1.704	-0.001119	657.023753864995	11.695	0.16847	11.695	11.607	11.775	0	738	97	0.829104889055312	0.0651821275823548	0.829104889055312	501.611042992746	0	39.4353904224656						582	20	4	NaN	NaN	NaN	0.0010125	1	31054	51.07	48.175	1	106520			142	2633	121	121	142	142		
AAPFSLEYR	9	Unmodified	_AAPFSLEYR_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.271824	1052.5291	0.45405	0.00023941	0.072625	3.8293E-05	0.52667	0.0002777	527.271899757833	10.073	0.27487	10.073	10.002	10.277	0	687	43	0.863749705078866	0.0284933997158956	0.863749705078866	350.494656851709	0	11.5621276594816						665	32	4	NaN	NaN	NaN	0.0069061	1	5533	58.426	49.663	1	239140			143	1822	122	122	143	143		
AAPLDSIHSLAAYYIDCIR	19	Unmodified	_AAPLDSIHSLAAYYIDCIR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.029735	2148.06737	0.081483	5.8426E-05	-7.4712	-0.0053571	-7.3897	-0.0052987	717.020827809215	19.117	0.29261	19.117	19.029	19.321	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	593.361410409696	0	9.76735623069942						429	34	4	NaN	NaN	NaN	0.066886	1	33995	3.441	3.3185	1	164110			144	1127	123	123	144	144		
AAPLDSIHSLAAYYIDCIR	19	Unmodified	_AAPLDSIHSLAAYYIDCIR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.029735	2148.06737	-0.064532	-4.6271E-05	-0.34372	-0.00024645	-0.40825	-0.00029273	717.363821569921	19.109	0.27488	19.109	19.029	19.304	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	560.334896855348	0	9.80393107564657						742	32	4	NaN	NaN	NaN	0.025603	1	33999	32.6	28.293	1	216250			145	1127	123	123	145	145		
AAPSTAPAEATPPK	14	Unmodified	_AAPSTAPAEATPPK_			0	0	0	O95817	O95817	O95817	BAG3	BAG family molecular chaperone regulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.843342	1307.67213	2.5611	0.0016771	-1.4596	-0.00095584	1.1015	0.00072128	654.842294129328	3.7317	0.097521	3.7317	3.6696	3.7672	0	534	40	0.967195187796614	0.0262808772147128	0.967195187796614	391.480540309412	0	10.6374102576539						214	12	3	NaN	NaN	NaN	0.039275	1	12592	39.702	31.229	1	44366			146	456	124	124	146	146		
AAPTAASDQPDSAATTEK	18	Unmodified	_AAPTAASDQPDSAATTEK_			0	0	0	Q9BRP8	Q9BRP8	Q9BRP8	WIBG	Partner of Y14 and mago	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.40522	1730.79589	3.4912	0.0030248	-2.4007	-0.00208	1.0905	0.00094483	866.403197877286	3.306	0.10642	3.306	3.2705	3.3769	0	366	58	1.07994477139643	0.0381250913283928	1.07994477139643	435.997857775254	0	15.3919520580404						365	13	3	NaN	NaN	NaN	1.6132E-14	1	25337	133.13	118.15	1	89019			147	2710	125	125	147	147		
AAQALALLR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAQALALLR_			1	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.798009	967.581465	-1.0421	-0.0005052	0.58517	0.00028369	-0.45691	-0.00022151	484.798213247438	18.178	0.12412	18.178	18.133	18.257	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	350.064763043623	0	8.27031450804299						277	15	3	NaN	NaN	NaN	8.6907E-05	1	3586	97.033	72.182	1	128230			148	1881	126	126	148	148		
AAQAPSSFQLLYDLK	15	Unmodified	_AAQAPSSFQLLYDLK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.438138	1650.86172	1.8394	0.0015202	0.91628	0.00075725	2.7557	0.0022774	826.438966990288	15.908	0.20396	15.908	15.854	16.058	0	342	139	1.09598084995137	0.0919920531865113	1.09598084995137	442.642151767393	0	37.15353271892						1281	24	5	NaN	NaN	NaN	1.1644E-06	1	23086	117.77	108.5	1	434020			149	656	127	127	149	149		
AAQDLCEEALR	11	Unmodified	_AAQDLCEEALR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.303526	1274.5925	1.6402	0.001047	0.96911	0.00061859	2.6093	0.0016655	638.30407060067	6.7821	0.1596	6.7821	6.72	6.8796	0	576	40	0.938871150116794	0.0263209282177764	0.938871150116794	380.119225262794	0	10.6565111102776						311	19	3	NaN	NaN	NaN	0.0038597	1	11610	63.212	45.742	1	114280			150	396	128	128	150	150		
AAQEEYVK	8	Unmodified	_AAQEEYVK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.234907	936.455261	-0.16237	-7.6188E-05	0.64509	0.0003027	0.48273	0.00022651	469.23518824024	2.5079	0.337	2.5079	2.4813	2.8183	0	768	31	0.808687310729125	0.0204317832671826	0.808687310729125	328.676007145779	0	8.30412058409917						296	39	3	NaN	NaN	NaN	0.036908	1	2998	51.43	35.932	1	60734			151	504	129	129	151	151		
AAQELQEGQR	10	Unmodified	_AAQELQEGQR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.283451	1128.55235	1.2763	0.00072147	-0.44307	-0.00025046	0.83323	0.00047101	565.283350942159	2.2685	0.13298	2.2685	2.2419	2.3749	0	705	19	0.851531465363931	0.0122233322127752	0.851531465363931	345.235950273585	0	4.95569909467008						75	16	2	NaN	NaN	NaN	0.0076033	1	7483	57.032	51.724	1	13913			152	970	130	130	152	152		
AAQGEPQVQFK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAQGEPQVQFK_			1	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.817127	1243.6197	1.5891	0.00098971	0.45002	0.00028028	2.0391	0.00127	622.817384242661	8.7599	0.22187	8.7599	8.6446	8.8665	0	522	31	0.975277694896658	0.0201978857694813	0.975277694896658	394.964481980223	0	8.17966773133702						419	26	3	NaN	NaN	NaN	0.027677	1	10736	43.272	33.758	1	255800			153	1399	131	131	153	153		
AAQLIGTCSQNVAAIQEQVLGLGALR	26	Unmodified	_AAQLIGTCSQNVAAIQEQVLGLGALR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	894.484954	2680.43303	1.2741	0.0011397	0.59782	0.00053474	1.8719	0.0016744	894.819886747049	18.798	0.11525	18.798	18.772	18.887	0	267	52	1.14597988355104	0.0339525806240335	1.14597988355104	692.028119029298	0	20.5031003097832						345	14	5	NaN	NaN	NaN	1.1307E-07	1	37552	78.925	78.883	1	83816			154	3134	132	132	154	154		
AAQNSGEAEYIEK	13	Unmodified	_AAQNSGEAEYIEK_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.330795	1408.64704	2.3997	0.0016926	-6.2108	-0.0043807	-3.8111	-0.0026881	705.324560042332	4.1573	0.25712	4.1573	4.1219	4.379	0	510	37	0.983355730988811	0.0242307604673273	0.983355730988811	397.723250218226	0	9.80025488704285						341	30	3	NaN	NaN	NaN	4.0341E-05	1	15713	110.52	102.96	1	84461			155	570	133	133	155	155		
AAQTAEDAMQIMEQMTK	17	Unmodified	_AAQTAEDAMQIMEQMTK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.928636	1895.84272	0.78626	0.0007461	1.3037	0.0012371	2.09	0.0019832	949.431262352705	16.307	0.070936	16.307	16.271	16.342	0	150	88	1.22363604450103	0.057641319763245	1.22363604450103	493.667363850675	0	23.2549854217466						387	9	3	NaN	NaN	NaN	6.5888E-05	1	29513	87.251	83.515	1	62180			156	914	134	134	156	156		
AAQVGLLFLK	10	Unmodified	_AAQVGLLFLK_			0	0	0	Q6NXR4	Q6NXR4	Q6NXR4	TTI2	TELO2-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.331685	1058.64882	-0.23537	-0.00012483	-1.1699	-0.00062041	-1.4052	-0.00074524	530.331046414658	14.657	0.088677	14.657	14.622	14.71	0	630	43	0.902373728295776	0.0284144382573517	0.902373728295776	366.140285746481	0	11.5292258812997						192	11	3	NaN	NaN	NaN	0.016253	1	5694	31.952	19.886	1	45469			157	2049	135	135	157	157		
AASAATAAPTATPAAQESGTIPK	23	Unmodified	_AASAATAAPTATPAAQESGTIPK_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.03693	2082.05931	1.8019	0.0018776	-1.2038	-0.0012544	0.59805	0.00062319	1042.53722468893	6.6402	0.062076	6.6402	6.6047	6.6668	0	159	37	1.21767724410157	0.0238401103088965	1.21767724410157	490.943984375543	0	9.61187276817162						201	8	4	NaN	NaN	NaN	4.2157E-09	1	33067	99.909	92.261	1	33943			158	49	136	136	158	158		
AASADSTTEGTPADGFTVLSTK	22	Unmodified	_AASADSTTEGTPADGFTVLSTK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.00804	2126.00152	1.8166	0.0019329	-0.57599	-0.00061286	1.2406	0.0013201	1064.50936556552	11.172	0.17734	11.172	11.11	11.287	0	180	115	1.203763835057	0.0755870927437334	1.203763835057	485.267897745327	0	30.4710845468254						1730	21	6	NaN	NaN	NaN	4.9655E-17	1	33692	168.69	164.84	1	418490			159	324	137	137	159	159		
AASAGQEPLHNEELAGAGR	19	Unmodified	_AASAGQEPLHNEELAGAGR_			0	0	0	Q96HY6	Q96HY6	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.458653	1876.90275	1.9844	0.0018642	-0.98238	-0.0009229	1.002	0.00094133	939.457734210962	5.2302	0.035474	5.2302	5.2125	5.2479	0	189	34	1.1977968526266	0.0218909560828158	1.1977968526266	483.278158142415	0	8.83240001213943						68	5	2	NaN	NaN	NaN	0.00084097	1	29077	46.206	40.178	1	12456			160	2553	138	138	160	160		
AASAGQEPLHNEELAGAGR	19	Unmodified	_AASAGQEPLHNEELAGAGR_			0	0	0	Q96HY6	Q96HY6	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.641527	1876.90275	0.16855	0.00010562	2.6532	0.0016626	2.8218	0.0017682	626.977325303012	5.2213	0.053194	5.2213	5.2036	5.2568	0	702	28	0.853568545818287	0.0183286333597692	0.853568545818287	516.585177962806	0	11.0926068824321						141	7	3	NaN	NaN	NaN	0.0016908	1	29078	34.338	28.133	1	32538			161	2553	138	138	161	161		
AASDIAMTELPPTHPIR	17	Unmodified	_AASDIAMTELPPTHPIR_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.317216	1818.92982	1.0315	0.00062642	-0.080278	-4.8754E-05	0.95117	0.00057766	607.651549566333	9.842	0.71822	9.842	9.6647	10.383	0	630	106	0.902373728295776	0.0711101137548393	0.902373728295776	546.249955030425	0	43.0463512209626						2631	82	3	NaN	NaN	NaN	0.0023535	1	27699	73.502	61.484	1	988310			162	1375	139	139	162	162		
AASDIAMTELPPTHPIR	17	Unmodified	_AASDIAMTELPPTHPIR_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.472186	1818.92982	2.3663	0.0021544	-1.2071	-0.001099	1.1592	0.0010554	910.972556302385	9.913	0.67384	9.913	9.7889	10.463	0	201	49	1.18983705239708	0.0318567027040773	1.18983705239708	480.178846540802	0	12.8563106420493						1193	77	4	NaN	NaN	NaN	6.4436E-05	1	27700	75.5	66.239	1	329010			163	1375	139	139	163	163		
AASDIAMTELPPTHPIR	17	Unmodified	_AASDIAMTELPPTHPIR_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.472186	1818.92982	2.5174	0.002292	-0.46441	-0.00042283	2.053	0.0018692	910.472045514115	9.7622	0.2128	9.7622	9.6558	9.8686	0	195	70	1.19381749893585	0.0457845927364511	1.19381749893585	481.785220286367	0	18.4771458928313						798	25	5	NaN	NaN	NaN	3.7422E-10	1	27701	128.57	113.59	1	258550			164	1375	139	139	164	164		
AASGFNAMEDAQTLR	15	Unmodified	_AASGFNAMEDAQTLR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.369929	1580.72531	2.329	0.0018431	-0.56357	-0.000446	1.7654	0.0013971	791.369286843942	9.9662	0.19506	9.9662	9.9218	10.117	0	372	64	1.07593298845566	0.0421498843295585	1.07593298845566	434.705704340457	0	17.0296806138912						748	23	5	NaN	NaN	NaN	1.896E-06	1	20988	128.46	125.79	1	369010			165	604	140	140	165	165		
AASLEAVSYAIDTLK	15	Unmodified	_AASLEAVSYAIDTLK_			0	0	0	O96007	O96007	O96007	MOCS2	Molybdopterin synthase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.416871	1550.81919	0.93464	0.00072567	1.5438	0.0011986	2.4784	0.0019243	776.417874192873	16.351	0.133	16.351	16.307	16.44	0	297	40	1.12600091227925	0.0259959052130696	1.12600091227925	455.010658582958	0	10.5047996164727						294	16	4	NaN	NaN	NaN	2.4499E-08	1	20092	119.55	110.04	1	74705			166	468	141	141	166	166		
AASSELPADISK	12	Unmodified	_AASSELPADISK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.808968	1187.60338	0.7264	0.00043207	1.0616	0.00063148	1.788	0.0010635	594.810226752725	6.2146	0.097534	6.2146	6.1702	6.2678	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.09655150495	0	7.39976097146098						117	12	2	NaN	NaN	NaN	0.06403	1	9090	27.589	19.942	1	27033			167	2819	142	142	167	167		
AASVVQPQPLVVVK	14	Unmodified	_AASVVQPQPLVVVK_			0	0	0	O60885	O60885	O60885	BRD4	Bromodomain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.937576	1433.8606	2.4597	0.0017659	-0.23776	-0.0001707	2.2219	0.0015952	717.937669371752	10.401	0.09753	10.401	10.347	10.445	0	357	43	1.08596037261705	0.0280708775163501	1.08596037261705	439.147101081153	0	11.3514680617691						292	12	3	NaN	NaN	NaN	9.6776E-06	1	16513	123.42	109.43	1	71934			168	292	143	143	168	168		
AATASAGAGGIDGK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AATASAGAGGIDGK_			1	0	0	Q02978	Q02978	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.796392	1187.57823	2.0381	0.0012123	-0.14402	-8.5662E-05	1.8941	0.0011266	594.796298455697	5.6647	0.15079	5.6647	5.6203	5.7711	0	507	34	0.985374541851584	0.0222038520438094	0.985374541851584	399.260158205032	0	8.99669425507403						220	18	3	NaN	NaN	NaN	1.4511E-08	1	9082	117.45	90.5	1	64729			169	1535	145	144	169	169		
AATFFGCIGIDK	12	Unmodified	_AATFFGCIGIDK_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.323731	1298.63291	0.98821	0.00064266	0.65172	0.00042383	1.6399	0.0010665	650.324140838047	14.001	0.21282	14.001	13.957	14.169	0	519	43	0.97729762293174	0.0282809550509913	0.97729762293174	395.598363033167	0	11.4477916047977						467	25	4	NaN	NaN	NaN	0.00063019	1	12310	87.942	70.211	1	153400			170	1272	146	145	170	170		
AATFFGEVVK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AATFFGEVVK_			1	0	0	O95456	O95456	O95456	PSMG1	Proteasome assembly chaperone 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.795132	1109.57571	-0.43241	-0.00024033	0.21824	0.0001213	-0.21417	-0.00011903	555.795150232776	18.045	0.15072	18.045	17.991	18.142	0	636	55	0.898312834727904	0.0365734128676034	0.898312834727904	364.277652344467	0	14.8309992494663						586	18	4	NaN	NaN	NaN	0.00017849	1	6978	100.84	85.254	1	268130			171	436	147	146	171	171		
AATFGLILDDVSLTHLTFGK	20	Unmodified	_AATFGLILDDVSLTHLTFGK_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.052645	2118.13611	0.70267	0.00049682	-1.7164	-0.0012136	-1.0138	-0.00071679	707.385772154609	19.552	0.15964	19.552	19.516	19.676	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	587.307942119662	0	14.6625015421059						466	19	5	NaN	NaN	NaN	7.9261E-08	1	33598	97.949	74.801	1	157570			172	960	148	147	172	172		
AATGEEVSAEDLGGADLHCR	20	Unmodified	_AATGEEVSAEDLGGADLHCR_			0	0	0	Q9HCC0	Q9HCC0	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.46327	2056.912	2.269	0.0023359	-1.0287	-0.001059	1.2403	0.0012768	1029.9642298366	7.7487	0.044348	7.7487	7.7309	7.7753	0	114	40	1.24744674793813	0.0257825563910137	1.24744674793813	502.987209787111	0	10.3958715045189						116	6	3	NaN	NaN	NaN	3.8244E-16	1	32648	112.68	104.32	1	17884			173	2960	149	148	173	173		
AATGEEVSAEDLGGADLHCR	20	Unmodified	_AATGEEVSAEDLGGADLHCR_			0	0	0	Q9HCC0	Q9HCC0	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.644609	2056.912	2.0347	0.0013971	0.017442	1.1976E-05	2.0521	0.0014091	686.979114099411	7.7576	0.1242	7.7576	7.7221	7.8463	0	510	37	0.983355730988811	0.0242240595168645	0.983355730988811	594.751314359418	0	14.6511489003969						304	15	4	NaN	NaN	NaN	0.00048541	1	32650	87.251	82.697	1	98057			174	2960	149	148	174	174		
AATIVATSEGSLWGLDR	17	Unmodified	_AATIVATSEGSLWGLDR_			0	0	0	P13861	P13861	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.954683	1745.89481	1.9428	0.0016979	2.0346	0.0017781	3.9774	0.003476	874.458180034437	14.498	0.12414	14.498	14.453	14.577	-1.7764E-15	219	28	1.17788915118882	0.0179304709178465	1.17788915118882	475.507500236682	0	7.23843444487665						218	15	4	NaN	NaN	NaN	1.0472E-06	1	25776	78.157	72.129	1	43580			175	687	150	149	175	175		
AATMTAAGHHAEVVVDPEDER	21	Unmodified	_AATMTAAGHHAEVVVDPEDER_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.011291	2205.01204	0.9597	0.00070635	1.1012	0.00081046	2.0609	0.0015168	736.346367529157	5.8953	0.10642	5.8953	5.8421	5.9485	0	552	37	0.955063035883597	0.0242811063417099	0.955063035883597	577.379408973812	0	14.6790424318289						299	13	4	NaN	NaN	NaN	2.939E-11	1	34734	140.78	134.26	1	71066			176	1709	151	150	176	176		
AATSDLEHYDK	11	Unmodified	_AATSDLEHYDK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.288399	1248.56225	2.8668	0.0017926	-0.73189	-0.00045764	2.1349	0.0013349	625.287731031588	3.7849	0.12413	3.7849	3.7228	3.847	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	388.399342695525	0	6.5516030729363						180	15	3	NaN	NaN	NaN	0.03952	1	10862	33.723	27.857	1	39433			177	1467	152	151	177	177		
AAVATFLQSVQVPEFTPK	18	Unmodified	_AAVATFLQSVQVPEFTPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.019164	1932.03566	-0.022312	-1.4392E-05	-1.6357	-0.001055	-1.658	-0.0010694	645.352210756171	17.814	0.08866	17.814	17.779	17.867	0	636	43	0.898312834727904	0.028418378530508	0.898312834727904	543.550999117473	0	17.1953883395587						203	11	3	NaN	NaN	NaN	0.017519	1	30364	63.908	62.198	1	32879			178	804	153	152	178	178		
AAVATFLQSVQVPEFTPK	18	Unmodified	_AAVATFLQSVQVPEFTPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.019164	1932.03566	0.62487	0.00040305	-1.5883	-0.0010245	-0.96342	-0.00062143	645.352301591886	17.823	0.14186	17.823	17.752	17.894	0	579	46	0.936845902828289	0.0303829256271585	0.936845902828289	566.866582156219	0	18.3840962042726						341	17	3	NaN	NaN	NaN	0.034119	1	30366	37.146	23.368	1	81180			179	804	153	152	179	179		
AAVATFLQSVQVPEFTPK	18	Unmodified	_AAVATFLQSVQVPEFTPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.025108	1932.03566	2.0208	0.0019541	-0.5179	-0.00050082	1.5029	0.0014533	967.526177617323	17.832	0.2837	17.832	17.716	18	0	138	205	1.23157729878518	0.135076139406623	1.23157729878518	496.803583811754	0	54.4881025420489						4293	33	6	NaN	NaN	NaN	2.4604E-45	1	30367	258	236.64	1	2432000			180	804	153	152	180	180		
AAVDAGFVPNDMQVGQTGK	19	Unmodified	_AAVDAGFVPNDMQVGQTGK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.962182	1903.90981	2.9575	0.0028184	-2.9567	-0.0028177	0.00078489	7.4797E-07	953.461197977747	11.092	0.30149	11.092	10.95	11.252	0	294	103	1.12800004657306	0.0678912228582942	1.12800004657306	455.069697215231	0	27.3893944628438						1692	35	5	NaN	NaN	NaN	3.0448E-05	1	29685	86.952	83.664	1	665730			181	685	154	153	181	181		
AAVDAGFVPNDMQVGQTGK	19	Unmodified	_AAVDAGFVPNDMQVGQTGK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.64388	1903.90981	0.95856	0.0006093	0.56663	0.00036018	1.5252	0.00096948	635.978832649746	11.092	0.079807	11.092	11.066	11.146	0	609	34	0.916577990479294	0.0223117043347298	0.916577990479294	554.661230083847	0	13.5017832635248						201	10	4	NaN	NaN	NaN	0.011094	1	29687	53.363	50.469	1	40283			182	685	154	153	182	182		
AAVEDSGTTVETIK	14	Unmodified	_AAVEDSGTTVETIK_			0	0	0	Q5VTR2	Q5VTR2	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.861928	1419.7093	2.2085	0.00157	-2.8407	-0.0020194	-0.6322	-0.0004494	710.860246812147	5.7268	0.097565	5.7268	5.6913	5.7889	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.221599222347	0	8.156104449368						171	12	3	NaN	NaN	NaN	0.0037651	1	16086	71.896	38.173	1	52074			183	2009	155	154	183	183		
AAVEEGIVLGGGCALLR	17	Unmodified	_AAVEEGIVLGGGCALLR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.30654	1683.89779	0.54255	0.00030508	-2.6077	-0.0014663	-2.0651	-0.0011612	562.305106764276	14.418	0.18621	14.418	14.365	14.551	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	547.810541041041	0	15.9850035802941						611	22	5	NaN	NaN	NaN	0.0023179	1	24023	103.69	72.646	1	402920			184	635	156	155	184	184		
AAVEEGIVLGGGCALLR	17	Unmodified	_AAVEEGIVLGGGCALLR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.956172	1683.89779	2.4439	0.0020601	1.0993	0.00092664	3.5432	0.0029867	842.957436099703	14.418	0.57637	14.418	14.311	14.888	0	198	160	1.1918274123006	0.105736097412063	1.1918274123006	481.27382915783	0	42.6974710906163						2842	66	6	NaN	NaN	NaN	5.6848E-07	1	24025	131.54	95.699	1	2925300			185	635	156	155	185	185		
AAVENLPTFLVELSR	15	Unmodified	_AAVENLPTFLVELSR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.959237	1657.90392	2.2919	0.0019022	-0.87794	-0.00072865	1.414	0.0011735	829.958706019652	19.02	0.23939	19.02	18.94	19.179	0	345	94	1.09397730668811	0.0621784206897633	1.09397730668811	441.817351943053	0	25.1115859617958						1479	28	5	NaN	NaN	NaN	4.7145E-17	1	23268	178.52	150.93	1	793490			186	1780	157	156	186	186		
AAVESLGFILFR	12	Unmodified	_AAVESLGFILFR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.876988	1321.73942	0.20356	0.00013473	0.0018444	1.2208E-06	0.20541	0.00013596	661.877242129266	18.603	0.09753	18.603	18.559	18.656	0	510	37	0.983355730988811	0.0242307604673273	0.983355730988811	397.977361999974	0	9.80651642752247						301	12	4	NaN	NaN	NaN	1.9864E-05	1	13043	109.88	89.644	1	117780			187	2641	158	157	187	187		
AAVESLGFILFR	12	Unmodified	_AAVESLGFILFR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.876988	1321.73942	0.47947	0.00031735	0.61815	0.00040914	1.0976	0.00072649	661.87742320274	18.594	0.062061	18.594	18.568	18.63	0	438	31	1.03173026378327	0.0201254424104516	1.03173026378327	417.555186911853	0	8.14503864272137						147	8	3	NaN	NaN	NaN	0.00058348	1	13044	74.424	52.38	1	46126			188	2641	158	157	188	188		
AAVEWFDGK	9	Unmodified	_AAVEWFDGK_			0	0	0	Q01844	Q01844	Q01844	EWSR1	RNA-binding protein EWS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.750724	1021.4869	-0.20534	-0.00010508	-1.2397	-0.00063441	-1.445	-0.00073949	511.749932391523	9.8509	0.23936	9.8509	9.7889	10.028	0	759	34	0.814815566123307	0.0224640226482813	0.814815566123307	330.767760237882	0	9.1190875165247						595	28	4	NaN	NaN	NaN	0.0004641	1	4768	72.038	22.078	1	281180			189	1523	159	158	189	189		
AAVGQESPGGLEAGNAK	17	Unmodified	_AAVGQESPGGLEAGNAK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.389176	1554.7638	2.49	0.0019382	-2.0307	-0.0015807	0.45933	0.00035754	778.388117598989	4.8489	0.097546	4.8489	4.8046	4.9021	0	441	34	1.02971785871157	0.022139515615524	1.02971785871157	416.093887591156	0	8.94625362074925						228	12	3	NaN	NaN	NaN	0.00022392	1	20196	51.829	42.567	1	57673			190	1921	160	159	190	190		
AAVLQQVLER	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AAVLQQVLER_			1	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.837862	1167.66117	-0.15604	-9.1257E-05	0.90075	0.00052679	0.74471	0.00043554	584.838498781235	19.481	0.14188	19.481	19.437	19.579	0	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	368.168737128471	0	9.87033611817844						324	17	4	NaN	NaN	NaN	2.7336E-07	1	8554	115.86	73.786	1	171100			191	667	161	160	191	191		
AAVLYVMDLSEQCGHGLR	18	Unmodified	_AAVLYVMDLSEQCGHGLR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.664398	2017.97137	0.7179	0.00048362	-0.48609	-0.00032746	0.23182	0.00015617	673.998450006461	13.309	0.088717	13.309	13.274	13.363	0	573	37	0.940896116921038	0.0242979231728671	0.940896116921038	569.14452624136	0	14.6977224415848						343	11	4	NaN	NaN	NaN	4.0656E-07	1	31952	75.5	73.517	1	101250			192	2808	162	161	192	192		
AAVLYVMDLSEQCGHGLR	18	Unmodified	_AAVLYVMDLSEQCGHGLR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.99296	2017.97137	0.6079	0.00061397	0.16073	0.00016234	0.76863	0.00077631	1010.4946723945	13.309	0.088717	13.309	13.274	13.363	0	87	37	1.26527909472281	0.0237650674470817	1.26527909472281	510.243450903354	0	9.58363263545931						261	11	4	NaN	NaN	NaN	1.226E-06	1	31953	73.891	68.275	1	57828			193	2808	162	161	193	193		
AAVMHDILDMMPEGIK	16	Unmodified	_AAVMHDILDMMPEGIK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.957754	1769.85143	-0.42508	-0.00025121	-3.8726	-0.0022885	-4.2977	-0.0025398	591.289375750915	16.12	0.14188	16.12	16.041	16.182	0	714	82	0.845418525735192	0.0549706718852435	0.845418525735192	511.879517969847	0	33.2833504004747						867	17	5	NaN	NaN	NaN	0.044851	1	26401	29.115	23.087	1	248450			194	2064	163	162	194	194		
AAVMHDILDMMPEGIK	16	Unmodified	_AAVMHDILDMMPEGIK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.932993	1769.85143	2.0197	0.0017893	-2.4025	-0.0021284	-0.38275	-0.00033909	886.432023470867	16.12	0.15962	16.12	16.049	16.209	0	255	79	1.15396378101328	0.0519096485335788	1.15396378101328	465.799294249571	0	20.9534112331087						721	19	4	NaN	NaN	NaN	1.5075E-07	1	26403	63.766	58.949	1	167300			195	2064	163	162	195	195		
AAVPSGASTGIYEALELR	18	Unmodified	_AAVPSGASTGIYEALELR_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.975615	1803.93668	1.7831	0.0016101	-2.1704	-0.0019598	-0.38724	-0.00034967	903.47671392264	14.622	0.25719	14.622	14.533	14.79	0	279	76	1.13799159301878	0.0499028259015095	1.13799159301878	459.284621421592	0	20.1403952741364						634	30	3	NaN	NaN	NaN	0.042285	1	27330	37.146	24.564	1	235570			196	544;596;688	164	163	196	196		
AAVPSGASTGIYEALELR	18	Unmodified	_AAVPSGASTGIYEALELR_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.975615	1803.93668	1.7133	0.0015471	-0.15774	-0.00014243	1.5556	0.0014047	902.975543943975	15.304	0.31932	15.304	15.18	15.5	0	267	43	1.14597988355104	0.0279551776858049	1.14597988355104	462.508626699841	0	11.2824937210478						591	37	4	NaN	NaN	NaN	0.0019143	1	27331	46.768	41.951	1	205060			197	544;596;688	164	163	197	197		
AAVPSGASTGIYEALELR	18	Unmodified	_AAVPSGASTGIYEALELR_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.975615	1803.93668	2.1545	0.0019455	2.5423	0.0022956	4.6968	0.0042411	902.978039747553	14.941	0.49662	14.941	14.764	15.26	0	282	238	1.13599383354359	0.157369213070958	1.13599383354359	458.478324618778	0	63.5129971879199						4859	57	6	NaN	NaN	NaN	1.4044E-19	1	27335	198.1	188.35	1	6110400			198	544;596;688	164	163	198	198		
AAVPSGASTGIYEALELRDNDK	22	Unmodified	_AAVPSGASTGIYEALELRDNDK_			0	0	1	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.716761	2276.12845	1.0459	0.00079458	0.30761	0.0002337	1.3535	0.0010283	760.05125421831	12.644	0.15962	12.644	12.582	12.742	0	492	40	0.995464410099171	0.0262227841979634	0.995464410099171	601.686257303964	0	15.8497769685109						359	19	3	NaN	NaN	NaN	0.021773	1	35433	20.614	14.998	1	76107			199	544	165	164	199	199		
AAWGEETDYTPVWCMR	16	Unmodified	_AAWGEETDYTPVWCMR_			0	0	0	P06132	P06132	P06132	UROD	Uroporphyrinogen decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.421836	1970.82912	1.4578	0.001438	1.1779	0.0011619	2.6357	0.0025999	986.924831552418	14.994	0.070951	14.994	14.967	15.038	0	258	31	1.15196821829984	0.0199570013831343	1.15196821829984	464.624990023527	0	8.04928592754351						234	9	4	NaN	NaN	NaN	1.785E-06	1	31124	86.243	85.566	1	55093			200	537	166	165	200	200		
AAYDVSSFSFFQR	13	Unmodified	_AAYDVSSFSFFQR_			0	0	0	O15498	O15498	O15498	YKT6	Synaptobrevin homolog YKT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.859523	1523.70449	1.8521	0.0014129	-0.31707	-0.00024188	1.535	0.001171	762.858389148889	15.517	0.13314	15.517	15.446	15.579	0	411	34	1.04982941439551	0.0221089774592802	1.04982941439551	424.296985095052	0	8.93552071496157						283	16	4	NaN	NaN	NaN	0.00029943	1	19219	90.142	74.263	1	80899			201	178	167	166	201	201		
AAYEAELGDAR	11	Unmodified	_AAYEAELGDAR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.277835	1164.54112	1.3148	0.00076688	1.2117	0.00070677	2.5265	0.0014736	583.278669216385	5.8066	0.31928	5.8066	5.6825	6.0017	0	639	61	0.896281965493857	0.0406089550100428	0.896281965493857	363.243560749352	0	16.4579250549021						866	37	4	NaN	NaN	NaN	9.5297E-06	1	8452	124.81	96.71	1	811230			202	493	168	167	202	202		
AAYFGIYDTAK	11	Unmodified	_AAYFGIYDTAK_			0	0	0	P05141	P05141	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.303321	1218.59209	1.3877	0.00084692	1.212	0.00073971	2.5997	0.0015866	610.304037553399	10.596	0.24832	10.596	10.525	10.773	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.778607720933	0	11.446200328403						675	29	4	NaN	NaN	NaN	0.0050055	1	9976	44.57	23.482	1	262520			203	525	169	168	203	203		
AAYFGVYDTAK	11	Unmodified	_AAYFGVYDTAK_			0	0	0	P12236;P12235	P12236	P12236	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.295496	1204.57644	1.2426	0.00074968	1.271	0.00076678	2.5136	0.0015165	603.296218102313	9.177	0.18627	9.177	9.1326	9.3189	0	519	34	0.97729762293174	0.0222222853930807	0.97729762293174	395.923317441608	0	9.00270372864424						353	22	4	NaN	NaN	NaN	0.00061628	1	9592	57.888	49.125	1	126860			204	665	170	169	204	204		
AAYNVTLLNFMDPQK	15	Unmodified	_AAYNVTLLNFMDPQK_			0	0	0	Q9C0B1	Q9C0B1	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.937447	1723.86034	1.9788	0.0017076	-0.51821	-0.00044718	1.4606	0.0012604	863.438375708962	17.646	0.18619	17.646	17.557	17.743	0	333	37	1.10198982404297	0.0240276252834357	1.10198982404297	444.91215339876	0	9.70079965592765						368	22	4	NaN	NaN	NaN	1.2466E-08	1	25166	112.73	94.996	1	77267			205	2818	171	170	205	205		
AAYPDLENPPLLVTPSQQAK	20	Unmodified	_AAYPDLENPPLLVTPSQQAK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.56787	2151.12118	1.7238	0.0018558	-0.26649	-0.00028689	1.4573	0.0015689	1077.06913959983	14.24	0.31032	14.24	14.081	14.391	0	114	100	1.24744674793813	0.0654570700644934	1.24744674793813	502.839477260205	0	26.3854140055419						1926	36	4	NaN	NaN	NaN	0.013757	1	34049	41.284	39.043	1	453370			206	1250	172	171	206	206		
ACADAGLLDESFLR	14	Unmodified	_ACADAGLLDESFLR_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.369398	1536.72424	1.2108	0.00093157	4.4219	0.0034021	5.6328	0.0043337	769.373041896078	14.71	0.1685	14.71	14.613	14.781	0	402	34	1.05585747106793	0.0221028774104899	1.05585747106793	426.700703047378	0	8.932373534173						413	20	4	NaN	NaN	NaN	0.0048212	1	19627	57.003	51.507	1	77689			207	407	173	172	207	207		
ACADATLSQITNNIDPVGR	19	Unmodified	_ACADATLSQITNNIDPVGR_			0	0	0	P62873	P62873	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.49438	2014.9742	2.0759	0.0020935	-0.12281	-0.00012385	1.953	0.0019696	1008.49388527934	14.258	0.17733	14.258	14.178	14.356	0	210	52	1.18386433251387	0.0338593720213791	1.18386433251387	477.416536010476	0	13.6544565605852						539	21	3	NaN	NaN	NaN	1.9947E-19	1	31892	133.93	117.83	1	246720			208	1408	174	173	208	208		
ACAELHQNVNVK	12	Unmodified	_ACAELHQNVNVK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.845893	1381.67723	2.2974	0.0015894	-1.3119	-0.00090766	0.98544	0.00068177	691.845037389992	3.4035	0.12423	3.4035	3.3769	3.5012	0	477	31	1.0055473068722	0.0201616152840689	1.0055473068722	406.775896239092	0	8.15601520759407						264	15	4	NaN	NaN	NaN	6.5522E-06	1	14878	135.28	114.19	1	60111			209	2605	175	174	209	209		
ACAELHQNVNVK	12	Unmodified	_ACAELHQNVNVK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.566354	1381.67723	0.099865	4.6094E-05	2.5916	0.0011962	2.6915	0.0012423	461.567598425339	3.4035	0.15083	3.4035	3.3681	3.5189	0	741	28	0.827064408645228	0.018364325465562	0.827064408645228	501.857181510787	0	11.1433505325062						227	18	2	NaN	NaN	NaN	0.0021731	1	14879	72.042	70.785	1	110520			210	2605	175	174	210	210		
ACALSIEESCRPGDK	15	Unmodified	_ACALSIEESCRPGDK_			0	0	1	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.887629	1691.7607	2.7999	0.0023712	-2.2332	-0.0018913	0.56669	0.00047993	846.885817649918	5.5671	0.12426	5.5671	5.5228	5.6471	0	315	37	1.11400032671325	0.0240143942796327	1.11400032671325	449.829288739228	0	9.696925251523						316	15	4	NaN	NaN	NaN	0.0027469	1	24246	47.57	46.518	1	79248			211	919	176	175	211	211		
ACALSIEESCRPGDK	15	Unmodified	_ACALSIEESCRPGDK_			0	0	1	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.927511	1691.7607	0.4901	0.00027687	1.0185	0.00057539	1.5086	0.00085226	564.928274611279	5.5671	0.088654	5.5671	5.5317	5.6203	0	711	22	0.847456455381371	0.0142635264886745	0.847456455381371	513.297265994286	0	8.63929834221273						166	11	4	NaN	NaN	NaN	0.0010671	1	24247	57.003	53.267	1	37020			212	919	176	175	212	212		
ACANPAAGSVILLENLR	17	Unmodified	_ACANPAAGSVILLENLR_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.317327	1767.93015	0.66568	0.00039296	-0.6378	-0.00037651	0.027876	1.6455E-05	590.317034793091	15.881	0.28377	15.881	15.757	16.041	0	543	43	0.961130371139249	0.028308359885891	0.961130371139249	581.945007129408	0	17.1401395588923						1033	33	5	NaN	NaN	NaN	2.4343E-10	1	26355	206.03	181.21	1	557660			213	484	177	176	213	213		
ACANPAAGSVILLENLR	17	Unmodified	_ACANPAAGSVILLENLR_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.972353	1767.93015	2.2438	0.0019857	0.92299	0.00081682	3.1668	0.0028025	884.973736799695	15.881	0.42565	15.881	15.704	16.129	0	288	76	1.13199748998575	0.0499577676911505	1.13199748998575	456.936414396717	0	20.1657012864451						2782	49	6	NaN	NaN	NaN	1.0034E-44	1	26356	250.16	219.81	1	2807900			214	484	177	176	214	214		
ACDSVTSNVLPLLLEQFHK	19	Unmodified	_ACDSVTSNVLPLLLEQFHK_			0	0	0	Q96T76	Q96T76	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.377023	2170.10924	0.30413	0.00022031	-0.51806	-0.00037527	-0.21392	-0.00015496	724.710825205726	18.683	0.10641	18.683	18.621	18.727	0	501	37	0.98941132619024	0.0242140133018964	0.98941132619024	598.204706586301	0	14.6399544245289						312	13	4	NaN	NaN	NaN	0.012154	1	34314	40.53	40.011	1	82972			215	2631	178	177	215	215		
ACGDSTLTQITAGLDPVGR	19	Unmodified	_ACGDSTLTQITAGLDPVGR_			0	0	0	P62879	P62879	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.654556	1930.94184	0.34641	0.00022331	1.6287	0.00105	1.9751	0.0012733	644.655666524822	15.074	0.062061	15.074	15.065	15.127	0	591	34	0.928742107665821	0.022280809347793	0.928742107665821	561.965393865467	0	13.4817229642388						91	8	2	NaN	NaN	NaN	0.048461	1	30328	14.5	13.881	1	17648			216	1410	179	178	216	216		
ACGDSTLTQITAGLDPVGR	19	Unmodified	_ACGDSTLTQITAGLDPVGR_			0	0	0	P62879	P62879	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.478196	1930.94184	2.13	0.0020586	0.74034	0.00071552	2.8703	0.0027741	966.980661698595	15.101	0.16846	15.101	15.047	15.216	0	231	67	1.16991841121525	0.0438571688460385	1.16991841121525	471.933026658666	0	17.6915297988101						1095	20	5	NaN	NaN	NaN	1.1961E-26	1	30330	216.01	195.68	1	450360			217	1410	179	178	217	217		
ACGLNFADLMAR	12	Unmodified	_ACGLNFADLMAR_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.818289	1337.62203	0.81581	0.00054645	0.86224	0.00057754	1.678	0.001124	669.819079869868	15.083	0.16842	15.083	15.021	15.189	0	501	40	0.98941132619024	0.0262409175570258	0.98941132619024	400.378944865565	0	10.6187493569951						387	20	3	NaN	NaN	NaN	0.00024311	1	13518	94.804	89.653	1	176950			218	2647	180	179	218	218		
ACGLVASNLNLK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ACGLVASNLNLK_			1	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.347737	1300.68092	1.703	0.0011093	-0.50953	-0.00033188	1.1935	0.00077739	651.347736415746	14.4	0.23053	14.4	14.338	14.568	0	441	52	1.02971785871157	0.0342250726954365	1.02971785871157	416.810543084962	0	13.853669737414						688	27	5	NaN	NaN	NaN	8.1123E-12	1	12370	166.66	127.65	1	455080			219	600	181	180	219	219		
ACGNFGIPCELR	12	Unmodified	_ACGNFGIPCELR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.321196	1392.62784	1.8426	0.0012849	-1.6317	-0.0011378	0.21085	0.00014703	697.320172059336	10.915	0.23944	10.915	10.844	11.083	0	516	67	0.979317271586824	0.0443985138367106	0.979317271586824	396.134148599724	0	17.9592130028508						1317	28	5	NaN	NaN	NaN	3.1625E-07	1	15224	96.957	91.09	1	568420			220	802	182	181	220	220		
ACIDSNEDGDLSK	13	Unmodified	_ACIDSNEDGDLSK_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.30392	1422.59329	2.644	0.0018833	-1.4844	-0.0010573	1.1596	0.000826	712.302840644168	4.2904	0.18621	4.2904	4.2637	4.4499	0	504	34	0.987393073566096	0.0222038520438094	0.987393073566096	399.318091455073	0	8.97960504124524						330	22	4	NaN	NaN	NaN	0.00049901	1	16162	61.194	57.301	1	87739			221	883	183	182	221	221		
ACIPVGLLGK	10	Unmodified	_ACIPVGLLGK_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.30207	1026.58959	-0.33081	-0.00017013	-2.1665	-0.0011142	-2.4973	-0.0012844	514.301705510713	11.642	0.16856	11.642	11.553	11.722	0	681	37	0.867820189810857	0.0244195217531761	0.867820189810857	352.261281154972	0	9.91225154584197						409	20	3	NaN	NaN	NaN	0.063316	1	4907	21.275	16.368	1	128960			222	2546	184	183	222	222		
ACISIGNQNFEVK	13	Unmodified	_ACISIGNQNFEVK_			0	0	0	P52564	P52564	P52564	MAP2K6	Dual specificity mitogen-activated protein kinase kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.366658	1478.71876	1.5489	0.0011467	-1.8389	-0.0013614	-0.28997	-0.00021468	741.368428547324	10.995	0.19507	10.995	10.871	11.066	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.469043560153	0	7.32399456646317						259	23	3	NaN	NaN	NaN	0.0029134	1	17853	36.952	31.801	1	64409			223	1213	185	184	223	223		
ACLDTAVENMPSLK	14	Unmodified	_ACLDTAVENMPSLK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.873459	1547.73236	1.8101	0.0014026	3.4392	0.002665	5.2493	0.0040675	775.377594637659	11.704	0.30144	11.704	11.58	11.882	0	369	76	1.07793901817685	0.0501715264263143	1.07793901817685	435.596796409079	0	20.2743901220118						2103	35	6	NaN	NaN	NaN	2.1073E-11	1	19971	181.87	153.22	1	1209900			224	1127	186	185	224	224		
ACLENLGLK	9	Unmodified	_ACLENLGLK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.273509	1016.53247	0.42154	0.00021468	-0.26083	-0.00013283	0.16071	8.1843E-05	509.273175814488	8.6623	0.21304	8.6623	8.6002	8.8133	0	654	52	0.886123392477847	0.0345535384849188	0.886123392477847	359.737894919094	0	14.027636898076						498	25	3	NaN	NaN	NaN	0.0094958	1	4665	56.014	39.557	1	157680			225	994	187	186	225	225		
ACLIFFDEIDAIGGAR	16	Unmodified	_ACLIFFDEIDAIGGAR_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.440354	1766.86616	0.89139	0.00078838	1.0467	0.00092576	1.9381	0.0017141	884.441480389696	19.268	0.088684	19.268	19.233	19.321	0	312	28	1.11600111266355	0.0180095545352803	1.11600111266355	450.48150765222	0	7.26968027821653						191	11	4	NaN	NaN	NaN	0.065893	1	26315	10.021	7.7196	1	34214			226	981	188	187	226	226		
ACLISLGYDIGNDPQGEAEFAR	22	Unmodified	_ACLISLGYDIGNDPQGEAEFAR_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	799.377751	2395.11142	0.27986	0.00022372	-3.1611	-0.0025269	-2.8813	-0.0023032	799.373683030873	15.721	0.23941	15.721	15.642	15.881	0	549	43	0.957085760909907	0.0283122781138182	0.957085760909907	578.314877757143	0	17.1075700059029						357	28	4	NaN	NaN	NaN	0.00059262	1	36319	62.711	61.899	1	60765			227	671	189	188	227	227		
ACLISLGYDIGNDPQGEAEFAR	22	Unmodified	_ACLISLGYDIGNDPQGEAEFAR_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1198.56299	2395.11142	0.49353	0.00059152	-0.9551	-0.0011447	-0.46157	-0.00055322	1199.06386859475	15.73	0.088663	15.73	15.695	15.783	0	66	49	1.27913350869533	0.0316650717164555	1.27913350869533	515.275122364814	0	12.7556846822262						341	11	4	NaN	NaN	NaN	5.0918E-08	1	36320	65.421	64.546	1	59735			228	671	189	188	228	228		
ACLISLGYDVENDR	14	Unmodified	_ACLISLGYDVENDR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.885412	1623.75627	2.0755	0.0016871	-0.39505	-0.00032113	1.6804	0.001366	812.883953408068	13.256	0.24833	13.256	13.176	13.425	0	369	64	1.07793901817685	0.0421440729846028	1.07793901817685	435.415943672741	0	17.0234131981233						822	29	5	NaN	NaN	NaN	7.3194E-06	1	22299	103.69	96.939	1	259020			229	221	190	189	229	229		
ACLISLGYDVENDRQGEAEFNR	22	Unmodified	_ACLISLGYDVENDRQGEAEFNR_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	852.730965	2555.17106	1.7429	0.0014862	-0.21156	-0.0001804	1.5314	0.0013058	853.065118706343	12.813	0.12415	12.813	12.768	12.893	0	525	43	0.973257487423603	0.028284867590345	0.973257487423603	587.874097766147	0	17.0848323593445						492	15	5	NaN	NaN	NaN	6.8758E-06	1	37048	94.63	93.006	1	137350			230	221	191	190	230	230		
ACMEEMHQVAIAAK	14	Unmodified	_ACMEEMHQVAIAAK_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.867653	1587.72075	2.2824	0.0018142	-1.5217	-0.0012096	0.76062	0.00060459	794.867015144317	6.5959	0.097543	6.5959	6.5693	6.6668	0	297	28	1.12600091227925	0.0179946865546097	1.12600091227925	454.917080216322	0	7.27005651377385						207	12	4	NaN	NaN	NaN	1.1048E-05	1	21192	99.276	98.005	1	47803			231	2772	192	191	231	231		
ACMLTTATAHDGDVNVISWSR	21	Unmodified	_ACMLTTATAHDGDVNVISWSR_			0	0	0	Q9BQ67	Q9BQ67	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.028176	2304.0627	0.75641	0.0005817	-0.15879	-0.00012211	0.59762	0.00045959	769.362570561071	12.423	0.062063	12.423	12.387	12.449	0	585	37	0.932794566565362	0.024311389219916	0.932794566565362	563.765424437217	0	14.693396760115						198	8	5	NaN	NaN	NaN	9.5967E-08	1	35670	88.796	78.775	1	48528			232	2692	193	192	232	232		
ACNCLLLK	8	Unmodified	_ACNCLLLK_			0	0	0	P09104;P13929	P09104;P13929	P09104	ENO2;ENO3	Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.256805	990.499057	0.70981	0.00035225	0.81357	0.00040374	1.5234	0.00075599	496.257283511311	6.8353	0.11525	6.8353	6.7998	6.9151	0	642	25	0.894250814548268	0.0162503358179286	0.894250814548268	363.164785345794	0	6.59943454689079						156	14	3	NaN	NaN	NaN	0.051181	1	4061	27.705	17.626	1	30050			233	596;688	194	193	233	233		
ACNDATLVQITSNMDSVGR	19	Unmodified	_ACNDATLVQITSNMDSVGR_			0	0	0	Q9HAV0	Q9HAV0	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.47787	2050.94119	1.6591	0.0017031	-0.47111	-0.00048359	1.188	0.0012195	1026.47754406697	13.753	0.11524	13.753	13.717	13.832	-1.7764E-15	201	37	1.18983705239708	0.0238859627305146	1.18983705239708	479.76757316995	0	9.63132754099377						279	14	4	NaN	NaN	NaN	2.2858E-06	1	32549	59.997	55.18	1	50124			234	2946	195	194	234	234		
ACPLDQAIGLLVAIFHK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ACPLDQAIGLLVAIFHK_			1	0	0	P06703	P06703	P06703	S100A6	Protein S100-A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.524221	1907.03389	0.30638	0.00029245	1.034	0.00098698	1.3404	0.0012794	955.026993900395	20.385	0.044338	20.385	20.377	20.421	0	114	52	1.24744674793813	0.0337110346399527	1.24744674793813	503.252168269644	0	13.5999002003176						162	6	5	NaN	NaN	NaN	7.3466E-14	1	29762	128.41	115.73	1	63685			235	542	196	195	235	235		
ACQLSVVVDDK	11	Unmodified	_ACQLSVVVDDK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.31082	1232.60709	1.2236	0.00075536	3.3658	0.0020777	4.5894	0.0028331	617.312683701798	7.5092	0.21279	7.5092	7.4028	7.6156	0	555	43	0.953040030838688	0.0283161971552985	0.953040030838688	385.996598045211	0	11.4685169749945						269	25	2	NaN	NaN	NaN	0.0055331	1	10399	50.297	38.23	1	83855			236	849	197	196	236	236		
ACQSIYPLHDVFVR	14	Unmodified	_ACQSIYPLHDVFVR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.95573	1703.84536	-1.7336	-0.00098632	-0.29955	-0.00017043	-2.0331	-0.0011567	568.9560231993	12.077	0.079819	12.077	12.041	12.121	0	768	22	0.808687310729125	0.0143012525920645	0.808687310729125	489.78692994609	0	8.6616501934912						157	10	4	NaN	NaN	NaN	0.00013353	1	24598	75.474	66.668	1	32561			237	1338	198	197	237	237		
ACQSIYPLHDVFVR	14	Unmodified	_ACQSIYPLHDVFVR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.95573	1703.84536	0.23621	0.00013439	-0.58239	-0.00033135	-0.34618	-0.00019696	568.955555190173	12.077	0.32814	12.077	12.024	12.352	0	693	115	0.85967808974117	0.077339344101532	0.85967808974117	520.669840730062	0	46.84109605217						2173	38	6	NaN	NaN	NaN	1.0861E-07	1	24599	162.21	133.88	1	2758900			238	1338	198	197	238	238		
ACQSIYPLHDVFVR	14	Unmodified	_ACQSIYPLHDVFVR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.929957	1703.84536	2.1336	0.0018198	-0.3742	-0.00031917	1.7594	0.0015007	853.430488528326	12.086	0.41679	12.086	11.882	12.298	0	291	136	1.12999890578964	0.0900107984295353	1.12999890578964	456.263153378325	0	36.3439384933403						2433	48	6	NaN	NaN	NaN	8.4054E-08	1	24600	137.58	104.48	1	1852300			239	1338	198	197	239	239		
ACTQLVDNLVEHILK	15	Unmodified	_ACTQLVDNLVEHILK_			0	0	0	Q6KC79	Q6KC79	Q6KC79	NIPBL	Nipped-B-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.981945	1751.924	-0.5809	-0.00033982	-0.0596	-3.4865E-05	-0.6405	-0.00037468	584.982366727549	17.548	0.10642	17.548	17.513	17.619	0	648	31	0.890187667287968	0.0203213763976985	0.890187667287968	539.028905707459	0	12.3050562085324						192	13	4	NaN	NaN	NaN	0.001814	1	25959	54.199	53.147	1	41763			240	2042	199	198	240	240		
ACVSMLGVPVDPDTLHATLR	20	Unmodified	_ACVSMLGVPVDPDTLHATLR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.034491	2151.08164	0.85892	0.00061673	0.57622	0.00041374	1.4351	0.0010305	718.369333478765	15.092	0.097526	15.092	15.03	15.127	0	501	31	0.98941132619024	0.0201811333938051	0.98941132619024	598.23832584867	0	12.202333989572						243	12	3	NaN	NaN	NaN	0.019289	1	34045	41.499	36.682	1	59784			241	2149	200	199	241	241		
ACVVHGSDLK	10	Unmodified	_ACVVHGSDLK_			0	0	0	P05023;P50993	P05023	P05023	ATP1A1;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.274041	1084.53353	1.8227	0.00099023	-0.13534	-7.3529E-05	1.6874	0.0009167	543.273987470638	2.6498	0.097564	2.6498	2.6232	2.7208	0	648	28	0.890187667287968	0.0182879696480781	0.890187667287968	361.085034026121	0	7.41811236586						144	12	3	NaN	NaN	NaN	0.0019572	1	6320	74.486	50.365	1	29381			242	522	201	200	242	242		
ACWVLHYFCEVK	12	Unmodified	_ACWVLHYFCEVK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.91974	1610.73739	-1.7742	-0.00095439	-2.0797	-0.0011187	-3.854	-0.0020731	538.252769025269	13.877	0.053203	13.877	13.859	13.912	0	795	16	0.790287188799094	0.0102279819264268	0.790287188799094	478.865686737931	0	6.19753130072144						75	7	3	NaN	NaN	NaN	0.031887	1	21904	19.557	17.715	1	11953			243	429	202	201	243	243		
ACWVLHYFCEVK	12	Unmodified	_ACWVLHYFCEVK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.375972	1610.73739	2.5833	0.0020832	1.5901	0.0012822	4.1735	0.0033654	806.377535541099	13.886	0.11527	13.886	13.841	13.957	0	315	31	1.11400032671325	0.020009239153943	1.11400032671325	450.013079498861	0	8.08295932610883						308	14	4	NaN	NaN	NaN	2.8864E-05	1	21909	97.277	88.471	1	83621			244	429	202	201	244	244		
ACYALENFVENLGPK	15	Unmodified	_ACYALENFVENLGPK_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.919255	1723.82396	1.4611	0.0012608	0.84384	0.00072817	2.3049	0.001989	862.919639367888	17.238	0.21284	17.238	17.167	17.38	0	318	79	1.11199926528787	0.0520240572987787	1.11199926528787	448.953388516412	0	21.0039498565786						762	25	3	NaN	NaN	NaN	4.2419E-07	1	25153	89.382	81.807	1	202910			245	2356	203	202	245	245		
ADAEGESDLENSR	13	Unmodified	_ADAEGESDLENSR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.797317	1391.58008	2.1392	0.0014906	-0.67692	-0.00047167	1.4623	0.0010189	696.796262991814	3.5278	0.11528	3.5278	3.5012	3.6164	0	537	25	0.965173861991602	0.0161717265136965	0.965173861991602	390.416021147037	0	6.54151689057068						190	14	3	NaN	NaN	NaN	0.00037337	1	15181	85.821	83.15	1	38191			246	3406	204	203	246	246		
ADALQLSVEEFVER	14	Unmodified	_ADALQLSVEEFVER_			0	0	0	Q6NYC1	Q6NYC1	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.409577	1604.8046	0.73304	0.00058893	1.8476	0.0014844	2.5806	0.0020733	803.410777528636	17.14	0.1596	17.14	17.096	17.255	0	381	28	1.06991323971056	0.0180617378392283	1.06991323971056	432.217221884634	0	7.29647401446471						266	19	3	NaN	NaN	NaN	9.2738E-05	1	21742	77.157	50.578	1	59344			247	2050	205	204	247	247		
ADALYPVVSAASICAK	16	Unmodified	_ADALYPVVSAASICAK_			0	0	0	O75792	O75792	O75792	RNASEH2A	Ribonuclease H2 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.424173	1634.83379	1.0893	0.00089148	0.75471	0.00061767	1.844	0.0015091	818.424810881294	13.043	0.097467	13.043	12.99	13.088	0	195	28	1.19381749893585	0.0179107814054655	1.19381749893585	482.195526738884	0	7.23435423070259						159	12	3	NaN	NaN	NaN	0.0037769	1	22629	58.313	53.484	1	28299			248	358	206	205	248	248		
ADATNVNNWHWTER	14	Unmodified	_ADATNVNNWHWTER_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.92912	1712.76553	0.070542	4.0345E-05	0.71482	0.00040882	0.78536	0.00044917	571.929490629173	8.5116	0.15079	8.5116	8.4672	8.618	0	717	43	0.84338031290707	0.028536968892656	0.84338031290707	510.777536285994	0	17.2828822785991						590	18	5	NaN	NaN	NaN	2.7461E-08	1	24840	150.44	133.45	1	357160			249	434	207	206	249	249		
ADATNVNNWHWTER	14	Unmodified	_ADATNVNNWHWTER_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.390042	1712.76553	2.3694	0.0020315	-0.32085	-0.00027509	2.0485	0.0017564	857.389573946012	8.5205	0.11527	8.5205	8.4761	8.5914	0	366	37	1.07994477139643	0.0240707016465822	1.07994477139643	436.03431605811	0	9.71869322163099						270	14	4	NaN	NaN	NaN	0.00025383	1	24842	68.108	64.258	1	66994			250	434	207	206	250	250		
ADAVQDSEMVELVELEIR	18	Unmodified	_ADAVQDSEMVELVELEIR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.673505	2044.99869	-0.21616	-0.00014757	-0.76466	-0.00052202	-0.98083	-0.00066958	683.007447023015	18.851	0.070915	18.851	18.834	18.905	0	570	25	0.942920803299286	0.016196370719784	0.942920803299286	570.317796374218	0	9.79623996612065						152	9	4	NaN	NaN	NaN	0.00065964	1	32440	74.733	73.994	1	32490			251	1131	208	207	251	251		
ADAVQDSEMVELVELEIR	18	Unmodified	_ADAVQDSEMVELVELEIR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.50662	2044.99869	0.90983	0.00093122	-0.26398	-0.00027018	0.64585	0.00066104	1023.50634907274	18.851	0.088654	18.851	18.816	18.905	0	198	40	1.1918274123006	0.0258746838681829	1.1918274123006	480.57951801867	0	10.4334259926557						352	11	4	NaN	NaN	NaN	0.00044583	1	32441	47.844	45.874	1	77343			252	1131	208	207	252	252		
ADAWEEIRR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADAWEEIRR_			1	0	1	O94874	O94874	O94874	UFL1	E3 UFM1-protein ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.293819	1186.57309	0.48913	0.00029069	3.318	0.0019719	3.8071	0.0022626	594.295649298544	10.232	0.10639	10.232	10.17	10.277	0	606	25	0.918606045818476	0.0162210713020401	0.918606045818476	372.210091554941	0	6.57261778532285						162	13	3	NaN	NaN	NaN	0.00088899	1	9053	60.892	43.496	1	44305			253	391	209	208	253	253		
ADCASGIFLAAEK	13	Unmodified	_ADCASGIFLAAEK_			0	0	0	O43747	O43747	O43747	AP1G1	AP-1 complex subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.829377	1351.6442	1.7504	0.0011847	4.5094	0.0030521	6.2598	0.0042368	677.33397773513	10.587	0.20397	10.587	10.454	10.658	0	435	49	1.03374239103424	0.0322051603576423	1.03374239103424	418.273725531054	0	13.0308793766685						406	24	3	NaN	NaN	NaN	0.052027	1	13930	23.804	17.938	1	93755			254	225	210	209	254	254		
ADCILYYGFGDIFR	14	Unmodified	_ADCILYYGFGDIFR_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.40324	1708.79193	0.90822	0.00077689	2.0331	0.0017391	2.9413	0.002516	855.404264111509	19.25	0.088694	19.25	19.188	19.277	0	327	34	1.10599442759226	0.0220207732442941	1.10599442759226	446.560351522552	0	8.89118787169485						175	11	3	NaN	NaN	NaN	0.0019407	1	24717	58.476	50.511	1	39885			255	1076	211	210	255	255		
ADCTITMADSDFLALMTGK	19	Unmodified	_ADCTITMADSDFLALMTGK_			0	0	0	P22307	P22307	P22307	SCP2	Non-specific lipid-transfer protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.9705	2059.92645	1.4147	0.0014585	-0.45791	-0.0004721	0.95681	0.00098644	1031.471273235	19.676	0.053188	19.676	19.658	19.712	0	183	49	1.20177511391933	0.0318129977486037	1.20177511391933	484.567039717049	0	12.8273001870471						297	7	5	NaN	NaN	NaN	3.8698E-05	1	32698	53.363	49.057	1	64013			256	803	212	211	256	256		
ADDADEFGYSR	11	Unmodified	_ADDADEFGYSR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.254557	1244.49456	1.4941	0.00093121	0.53875	0.00033578	2.0329	0.001267	623.254920003547	5.8953	0.25721	5.8953	5.8509	6.1081	0	594	49	0.926715457081489	0.0324286658287691	0.926715457081489	375.295023047595	0	13.1327440333613						616	30	4	NaN	NaN	NaN	1.3366E-07	1	10751	147.78	131.32	1	280930			257	2108	213	212	257	257		
ADDGRPFPQVIK	12	Unmodified	_ADDGRPFPQVIK_			0	0	1	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	448.241976	1341.7041	0.041845	1.8757E-05	-2.0254	-0.00090789	-1.9836	-0.00088913	448.241136791057	7.6156	0.25721	7.6156	7.5181	7.7753	0	894	34	0.722622390967862	0.0226052849869548	0.722622390967862	438.611692822354	0	13.7207792600782						746	30	4	NaN	NaN	NaN	0.053535	1	13667	50.297	40.554	1	344160			258	504	214	213	258	258		
ADDGRPFPQVIK	12	Unmodified	_ADDGRPFPQVIK_			0	0	1	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	448.241976	1341.7041	-0.40826	-0.000183	-0.72087	-0.00032312	-1.1291	-0.00050612	448.24170047988	7.6334	0.34591	7.6334	7.5181	7.864	0	789	94	0.794378096728713	0.0634577195040166	0.794378096728713	482.165404039815	0	38.5170702592378						1987	40	4	NaN	NaN	NaN	0.0073732	1	13668	56.202	32.366	1	1217500			259	504	214	213	259	259		
ADDIDIEAMLEAPYK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADDIDIEAMLEAPYK_			1	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.408385	1734.80222	1.2526	0.0010877	1.9969	0.0017341	3.2495	0.0028219	868.410953384387	19.915	0.035482	19.915	19.907	19.942	0	273	40	1.14198628764525	0.0259673060205863	1.14198628764525	461.0369295604	0	10.4833894821733						97	5	3	NaN	NaN	NaN	3.4635E-08	1	25460	77.157	70.781	1	20978			260	1753	215	214	260	260		
ADDMSDDQGTSVQSK	15	Unmodified	_ADDMSDDQGTSVQSK_			0	0	0	Q13111	Q13111	Q13111	CHAF1A	Chromatin assembly factor 1 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.328124	1582.64169	2.4453	0.0019375	-2.0779	-0.0016463	0.36742	0.00029112	792.326318125444	2.9602	0.044331	2.9602	2.9513	2.9956	0	468	19	1.01159370163332	0.0120886137418381	1.01159370163332	408.706618937091	0	4.88407197680829						44	6	2	NaN	NaN	NaN	0.006368	1	21039	23.931	23.698	1	7167			261	1627	216	215	261	261		
ADDPLRLDQELQQPQTQEK	19	Unmodified	_ADDPLRLDQELQQPQTQEK_			0	0	1	Q12888	Q12888	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	751.376628	2251.10805	0.95871	0.00072035	-0.32423	-0.00024362	0.63448	0.00047673	751.710913543176	10.152	0.1064	10.152	10.099	10.206	0	588	28	0.93076847747433	0.0182348035691394	0.93076847747433	562.620155300594	0	11.0223629873929						254	13	4	NaN	NaN	NaN	0.020232	1	35188	43.518	40.773	1	60698			262	1602	217	216	262	262		
ADDPSSYMEVVQAANTSGNWEELVK	25	Unmodified	_ADDPSSYMEVVQAANTSGNWEELVK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	914.085073	2739.23339	0.99686	0.00091122	1.8025	0.0016477	2.7994	0.0025589	914.421481012172	17.974	0.11526	17.974	17.92	18.036	0	237	52	1.16593139812432	0.0339012683335864	1.16593139812432	703.998335753602	0	20.4698462749832						509	14	6	NaN	NaN	NaN	1.9719E-13	1	37724	122.16	120.1	1	166960			263	1503	218	217	263	263		
ADDPYAHLSK	10	Unmodified	_ADDPYAHLSK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.769645	1115.52474	2.7387	0.0015303	0.14603	8.1599E-05	2.8847	0.0016119	558.769649636465	3.9002	0.19507	3.9002	3.8558	4.0509	-4.4409E-16	591	31	0.928742107665821	0.0202651042983174	0.928742107665821	376.592480301297	0	8.2172282577435						295	23	3	NaN	NaN	NaN	0.023201	1	7138	39.039	20.702	1	82633			264	2308	219	218	264	264		
ADDVDQQQTTNTVEEPLDLIR	21	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADDVDQQQTTNTVEEPLDLIR_			1	0	0	P62310	P62310	P62310	LSM3	U6 snRNA-associated Sm-like protein LSm3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1221.58517	2441.15579	0.31824	0.00038876	0.70483	0.000861	1.0231	0.0012498	1222.08805674354	17.362	0.14187	17.362	17.3	17.442	0	66	58	1.27913350869533	0.0376100012347553	1.27913350869533	515.219027560334	0	15.1488395315966						673	17	5	NaN	NaN	NaN	2.7791E-16	1	36538	132.63	128.03	1	163800			265	1383	220	219	265	265		
ADEASELACPTPK	13	Unmodified	_ADEASELACPTPK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.821749	1387.62895	2.3104	0.0016053	-1.4505	-0.0010079	0.85989	0.00059747	694.821161567595	5.5494	0.33694	5.5494	5.4697	5.8066	0	486	82	0.999498404980629	0.0544702712697026	0.999498404980629	404.311741367909	0	22.0340223857212						1523	39	5	NaN	NaN	NaN	7.9776E-12	1	15064	191.24	179.17	1	756330			266	1127	221	220	266	266		
ADEDPIMGFHQMFLLK	16	Unmodified	_ADEDPIMGFHQMFLLK_			0	0	0	P61970	P61970	P61970	NUTF2	Nuclear transport factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.307552	1890.90083	-0.73803	-0.00046593	-0.66753	-0.00042142	-1.4056	-0.00088734	631.64148442028	17.211	0.15075	17.211	17.149	17.3	0	678	106	0.869855008346864	0.0712583209725068	0.869855008346864	526.413297360208	0	43.1236554914809						989	18	4	NaN	NaN	NaN	0.042594	1	29387	33.1	26.724	1	289800			267	1359	222	221	267	267		
ADEEEMLDNLPEAGDSR	17	Unmodified	_ADEEEMLDNLPEAGDSR_			0	0	0	Q9NPD8	Q9NPD8	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.904727	1889.7949	2.2379	0.0021169	0.83689	0.00079162	3.0748	0.0029085	945.905592171496	11.456	0.09756	11.456	11.412	11.509	0	309	49	1.11800162319566	0.0320059751751898	1.11800162319566	451.060387334766	0	12.9128860459817						420	12	4	NaN	NaN	NaN	3.5496E-14	1	29362	104	100.49	1	138610			268	2986	223	222	268	268		
ADEGISFR	8	Unmodified	_ADEGISFR_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.719424	893.424296	-0.35274	-0.00015793	-0.23575	-0.00010555	-0.58849	-0.00026348	447.719534667323	6.1347	0.31037	6.1347	6.055	6.3653	0	798	58	0.788241307691771	0.0388663471360342	0.788241307691771	320.589150997312	0	15.8075060379611						938	36	4	NaN	NaN	NaN	0.0018737	1	2224	93.561	49.141	1	952930			269	1564	224	223	269	269		
ADEHVIDQGDDGDNFYVIER	20	Unmodified	_ADEHVIDQGDDGDNFYVIER_			0	0	0	P13861	P13861	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.676854	2306.00873	1.6639	0.0012806	0.073625	5.6668E-05	1.7375	0.0013373	770.011141310382	10.968	0.15074	10.968	10.924	11.075	0	582	43	0.934820374997243	0.028363289192291	0.934820374997243	564.986932132271	0	17.1422106048771						503	18	5	NaN	NaN	NaN	6.2737E-16	1	35676	105.79	96.632	1	192340			270	687	225	224	270	270		
ADEWLMK	7	Unmodified	_ADEWLMK_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.715296	891.416039	-1.1399	-0.00050919	-1.2993	-0.00058042	-2.4392	-0.0010896	446.714885560735	8.4584	0.16849	8.4584	8.3963	8.5648	0	822	34	0.771863999559055	0.0225360574368206	0.771863999559055	313.938970699532	0	9.16605344903087						283	20	3	NaN	NaN	NaN	0.041853	1	2180	33.813	16.118	1	70705			271	972	226	225	271	271		
ADFCIIHYAGK	11	Unmodified	_ADFCIIHYAGK_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	432.213141	1293.61759	-2.2065	-0.00095369	-0.41676	-0.00018013	-2.6233	-0.0011338	432.213090408722	9.5051	0.14186	9.5051	9.4696	9.6115	0	828	28	0.767766820543916	0.0184385915537137	0.767766820543916	466.189404645051	0	11.1959462025585						310	17	4	NaN	NaN	NaN	0.038994	1	12174	13.995	10.102	1	101440			272	972	227	226	272	272		
ADFCIIHYAGK	11	Unmodified	_ADFCIIHYAGK_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.816073	1293.61759	1.4861	0.00096272	-0.19341	-0.00012529	1.2927	0.00083743	647.815409660028	9.514	0.26601	9.514	9.4164	9.6824	0	495	70	0.993446994398923	0.0464391008964484	0.993446994398923	402.15184834995	0	18.7987586318243						995	31	5	NaN	NaN	NaN	2.9061E-05	1	12175	112.8	91.713	1	510080			273	972	227	226	273	273		
ADFDDRVSDEEK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADFDDRVSDEEK_			1	0	1	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.315342	1466.61613	1.6454	0.0012083	0.45423	0.00033355	2.0996	0.0015418	734.315570850942	7.0214	0.24835	7.0214	6.9683	7.2166	0	477	43	1.0055473068722	0.0282184646673942	1.0055473068722	406.542400599436	0	11.408714725513						669	29	5	NaN	NaN	NaN	2.3203E-07	1	17464	101.64	83.912	1	328030			274	1226	228	227	274	274		
ADFDNTVAIHPTSSEELVTLR	21	Unmodified	_ADFDNTVAIHPTSSEELVTLR_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1158.07933	2314.1441	1.2831	0.001486	-4.3239	-0.0050074	-3.0408	-0.0035214	1158.0733463992	12.937	0.10642	12.937	12.875	12.981	0	72	37	1.27517645957152	0.0237390486204621	1.27517645957152	513.784811991066	0	9.56476457886396						260	13	4	NaN	NaN	NaN	0.0014822	1	35763	28.664	24.358	1	54968			275	475	229	228	275	275		
ADFDNTVAIHPTSSEELVTLR	21	Unmodified	_ADFDNTVAIHPTSSEELVTLR_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.388645	2314.1441	2.1961	0.0016962	-1.7477	-0.0013499	0.44838	0.00034632	772.721805791572	12.937	0.19508	12.937	12.884	13.079	0	543	55	0.961130371139249	0.0363964682875382	0.961130371139249	580.875956138484	0	21.996842417463						917	23	6	NaN	NaN	NaN	6.8253E-38	1	35764	238.39	222.86	1	400710			276	475	229	228	276	276		
ADFSGMSQTDLSLSK	15	Unmodified	_ADFSGMSQTDLSLSK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.87197	1585.72939	2.2747	0.0018058	0.52193	0.00041435	2.7967	0.0022202	793.872395284453	10.959	0.23942	10.959	10.897	11.137	0	381	40	1.06991323971056	0.0260927771036219	1.06991323971056	432.261713576718	0	10.541890804004						638	28	5	NaN	NaN	NaN	0.00012354	1	21121	97.084	91.933	1	234980			277	961	230	229	277	277		
ADFSGMSQTDLSLSK	15	Oxidation (M)	_ADFSGM(Oxidation (M))SQTDLSLSK_	ADFSGM(1)SQTDLSLSK	ADFSGM(73)SQTDLSLSK	0	1	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.869427	1601.7243	2.0649	0.0016558	1.4494	0.0011622	3.5143	0.002818	801.8703885218	8.2188	0.1331	8.2188	8.1833	8.3164	0	396	37	1.05987478976334	0.0240972677801761	1.05987478976334	428.168995439546	0	9.73483192347618						284	16	4	NaN	NaN	NaN	0.00093796	1	21622	73.305	71.463	1	58291			278	961	230	230	278	278	342	
ADFVLAANSYDLAIK	15	Unmodified	_ADFVLAANSYDLAIK_			0	0	0	Q14318	Q14318	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.924863	1609.83517	1.8145	0.0014623	-0.047317	-3.8134E-05	1.7671	0.0014242	805.924434951924	15.207	0.16845	15.207	15.145	15.313	0	303	37	1.12200181823275	0.0239978708876349	1.12200181823275	453.247544925847	0	9.69425885637173						302	19	4	NaN	NaN	NaN	0.00013683	1	21893	78.864	69.602	1	89529			279	1746	231	231	279	279		
ADGELNVDSLITR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADGELNVDSLITR_			1	0	0	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.867545	1443.72054	0.89259	0.00064523	0.79934	0.00057781	1.6919	0.001223	722.868134573091	16.448	0.15965	16.448	16.395	16.555	0	405	37	1.05384839605172	0.0241138939536367	1.05384839605172	426.133655154931	0	9.75068312385355						361	19	4	NaN	NaN	NaN	1.4423E-06	1	16779	88.24	81.55	1	118780			280	1366	232	232	280	280		
ADGGTQVIDTK	11	Unmodified	_ADGGTQVIDTK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.78021	1103.54587	1.21	0.00066889	1.8478	0.0010214	3.0579	0.0016903	552.780993915672	3.4567	0.062186	3.4567	3.4213	3.4834	0	642	22	0.894250814548268	0.0142239758453706	0.894250814548268	362.654750844262	0	5.76839554663803						95	8	4	NaN	NaN	NaN	0.0050639	1	6809	78.932	63.433	1	50044			281	607	233	233	281	281		
ADGLLGMFLK	10	Unmodified	_ADGLLGMFLK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.794078	1063.5736	-0.1902	-0.00010134	-1.6567	-0.00088269	-1.8469	-0.00098403	532.793187130869	18.417	0.11531	18.417	18.381	18.497	0	651	37	0.888155670855968	0.0243890366748388	0.888155670855968	360.349848553453	0	9.89532123763018						304	14	4	NaN	NaN	NaN	0.0089894	1	5820	40.502	29.8	1	109910			282	2268	234	234	282	282		
ADGQVAELLLR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADGQVAELLLR_			1	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.840602	1225.66665	0.32465	0.00019928	0.11836	7.2654E-05	0.44301	0.00027194	613.840719904738	18.036	0.17734	18.036	17.982	18.16	0	513	52	0.981336640919867	0.0343387884231721	0.981336640919867	397.482121296072	0	13.9086363394985						544	21	4	NaN	NaN	NaN	1.1155E-07	1	10177	148.9	128.67	1	309460			283	3337	235	235	283	283		
ADGYVLEGK	9	Unmodified	_ADGYVLEGK_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.242732	950.470912	0.62655	0.00029839	-1.1589	-0.00055193	-0.53237	-0.00025354	476.242383465003	5.0617	0.32811	5.0617	4.9997	5.3278	0	747	76	0.822982596624503	0.0510546280388819	0.822982596624503	334.414732513191	0	20.7457847215853						714	38	4	NaN	NaN	NaN	0.0039296	1	3251	60.892	38.964	1	417050			284	1370	236	236	284	284		
ADHDFVVQEDFMK	13	Unmodified	_ADHDFVVQEDFMK_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.573174	1579.69769	-0.70388	-0.00037135	-0.46219	-0.00024384	-1.1661	-0.00061519	527.573068146869	10.711	0.13303	10.711	10.658	10.791	0	759	58	0.814815566123307	0.0388069022420119	0.814815566123307	493.810977506769	0	23.5185422651063						517	16	4	NaN	NaN	NaN	0.0042944	1	20950	68.49	60.017	1	206520			285	1390	237	237	285	285		
ADHDFVVQEDFMK	13	Unmodified	_ADHDFVVQEDFMK_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.856123	1579.69769	1.8849	0.0014907	2.6147	0.0020678	4.4996	0.0035585	790.85804257348	10.693	0.097545	10.693	10.658	10.755	0	396	28	1.05987478976334	0.0180766890154731	1.05987478976334	428.220169934032	0	7.30350690177187						219	12	4	NaN	NaN	NaN	2.0541E-05	1	20952	99.589	89.339	1	52972			286	1390	237	237	286	286		
ADHQPLTEASYVNLPTIALCNTDSPLR	27	Unmodified	_ADHQPLTEASYVNLPTIALCNTDSPLR_			0	0	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	999.497588	2995.47093	2.0901	0.002089	0.78706	0.00078666	2.8771	0.0028757	999.832765099815	16.2	0.20397	16.2	16.094	16.298	0	348	142	1.09197348738011	0.0943096434906692	1.09197348738011	659.057041459115	0	56.9202781371083						2789	24	6	NaN	NaN	NaN	3.9028E-45	1	38218	183.74	179.69	1	961840			287	592	238	238	287	287		
ADHSFSDGVPSDSVEAAK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADHSFSDGVPSDSVEAAK_			1	0	0	Q99733	Q99733	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.915952	1859.81735	2.5199	0.0023459	-0.65544	-0.00061016	1.8645	0.0017357	930.91504235607	8.3785	0.16851	8.3785	8.3164	8.485	0	297	73	1.12600091227925	0.0479627536019942	1.12600091227925	454.341086790244	0	19.3529590956303						1031	20	4	NaN	NaN	NaN	4.6012E-07	1	28688	105.78	99.403	1	306810			288	2670	239	239	288	288		
ADHTLSSLEPAYSAK	15	Unmodified	_ADHTLSSLEPAYSAK_			0	0	0	Q5VW32	Q5VW32	Q5VW32	BROX	BRO1 domain-containing protein BROX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.393927	1588.7733	2.2461	0.0017865	-1.0341	-0.00082248	1.212	0.00096403	795.392757867256	7.3585	0.12412	7.3585	7.3142	7.4383	0	375	25	1.07392668217569	0.0160515578478193	1.07392668217569	433.876015987357	0	6.48497340180904						185	15	3	NaN	NaN	NaN	0.00048437	1	21238	62.705	55.958	1	43585			289	2011	240	240	289	289		
ADHVQSLAQLENLCK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADHVQSLAQLENLCK_			1	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.438343	1766.86213	2.1485	0.0019002	0.5493	0.00048583	2.6978	0.002386	884.439277317778	13.389	0.1153	13.389	13.345	13.46	0	273	43	1.14198628764525	0.0279628687340265	1.14198628764525	460.970611815119	0	11.2874041027314						393	14	4	NaN	NaN	NaN	2.2436E-08	1	26314	108.91	99.757	1	110040			290	3235	241	241	290	290		
ADIEMPFDPSK	11	Unmodified	_ADIEMPFDPSK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.292096	1248.56964	0.69857	0.00043681	-1.5541	-0.00097178	-0.85555	-0.00053497	625.290974145953	12.192	0.22171	12.192	12.094	12.316	0	606	76	0.918606045818476	0.0506522651893861	0.918606045818476	371.997614320523	0	20.5120812084287						727	26	4	NaN	NaN	NaN	0.00029382	1	10863	64.064	53.362	1	178380			291	326	242	242	291	291		
ADIEVACYGYEGIDAVK	17	Unmodified	_ADIEVACYGYEGIDAVK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.937841	1871.86113	2.6128	0.002448	-0.81941	-0.00076774	1.7934	0.0016803	937.438299384455	12.875	0.13302	12.875	12.83	12.963	0	168	46	1.21171599086077	0.0298226378450779	1.21171599086077	488.903809271555	0	12.0328537008305						406	16	4	NaN	NaN	NaN	0.00014436	1	28973	91.032	89.853	1	79743			292	527	243	243	292	292		
ADIEVACYGYEGIDAVK	17	Unmodified	_ADIEVACYGYEGIDAVK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.937841	1871.86113	2.7716	0.0025968	1.4328	0.0013425	4.2044	0.0039393	936.940152477027	12.866	0.2217	12.866	12.813	13.034	0	261	52	1.14997238118939	0.0339245776716619	1.14997238118939	463.991457268477	0	13.6879063258997						544	26	4	NaN	NaN	NaN	2.7792E-05	1	28974	79.235	76.151	1	116160			293	527	243	243	293	293		
ADIFMFDEPSSYLDVK	16	Unmodified	_ADIFMFDEPSSYLDVK_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.93731	1875.86007	1.1415	0.0010718	1.7079	0.0016036	2.8494	0.0026754	939.440099032029	18.124	0.1241	18.124	18.08	18.204	0	225	115	1.17390432875292	0.0757742016400822	1.17390432875292	473.640102765704	0	30.5729349255612						779	15	4	NaN	NaN	NaN	1.7123E-06	1	29051	70.806	65.418	1	177930			294	1335	244	244	294	294		
ADIGVAMGIAGSDVSK	16	Unmodified	_ADIGVAMGIAGSDVSK_			0	0	0	P05023;P13637	P05023	P05023	ATP1A1;ATP1A3	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.879598	1489.74464	1.6781	0.0012517	-0.71672	-0.00053459	0.96142	0.0007171	745.878982312693	11.252	0.088668	11.252	11.225	11.314	0	312	40	1.11600111266355	0.0260209682813848	1.11600111266355	451.133364397419	0	10.5187412740498						211	11	3	NaN	NaN	NaN	0.0025809	1	18216	79.795	73.929	1	40080			295	522	245	245	295	295		
ADIIVSELLGSFADNELSPECLDGAQHFLK	30	Unmodified	_ADIIVSELLGSFADNELSPECLDGAQHFLK_			0	0	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1096.87461	3287.60201	0.81279	0.00089153	1.0576	0.00116	1.8704	0.0020516	1097.54469517252	20.022	0.026599	20.022	20.013	20.04	0	228	55	1.17191150690002	0.0358929954231473	1.17191150690002	707.012709848635	0	21.654198127836						157	4	5	NaN	NaN	NaN	0.00038799	1	38533	24.457	24.332	1	29772			296	115	246	246	296	296		
ADIIYPGHGPVIHNAEAK	18	Unmodified	_ADIIYPGHGPVIHNAEAK_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.497049	1900.97955	2.238	0.0021294	-0.50061	-0.00047633	1.7374	0.0016531	951.998855072828	6.6047	0.053205	6.6047	6.5781	6.6313	0	252	31	1.15595906938629	0.0199487720168505	1.15595906938629	466.354414138163	0	8.0480339945197						119	7	3	NaN	NaN	NaN	0.0022381	1	29623	34.338	32.036	1	18245			297	1951	247	247	297	297		
ADILQVGLR	9	Unmodified	_ADILQVGLR_			0	0	0	Q9H074	Q9H074	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.795466	983.57638	-0.71835	-0.000354	-1.9335	-0.0009528	-2.6518	-0.0013068	492.795128193283	11.199	0.14186	11.199	11.128	11.27	0	723	25	0.839303037468863	0.0163113695706084	0.839303037468863	340.882777671177	0	6.62485981656704						162	17	2	NaN	NaN	NaN	0.040647	1	3919	49.325	32.778	1	49456			298	2838	248	248	298	298		
ADKPDMGEIASFDK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADKPDMGEIASFDK_			1	0	1	P63313	P63313	P63313	TMSB10	Thymosin beta-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.361238	1564.70792	2.7187	0.0021297	0.24612	0.0001928	2.9649	0.0023225	783.361657683882	11.305	0.49671	11.305	11.19	11.687	0	399	118	1.0578662689527	0.0783973223314074	1.0578662689527	427.444258549434	0	31.6774305975229						2971	57	6	NaN	NaN	NaN	0.0061653	1	20479	61.042	54.665	1	6475100			299	1438	249	249	299	299		
ADLAEEYSK	9	Unmodified	_ADLAEEYSK_			0	0	0	P68036	P68036	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.242929	1024.47131	1.126	0.00057794	2.2795	0.0011699	3.4055	0.0017479	513.243980260155	4.6627	0.28376	4.6627	4.6095	4.8933	0	678	40	0.869855008346864	0.026448974146953	0.869855008346864	353.09688263977	0	10.7363298833648						541	33	4	NaN	NaN	NaN	0.00058474	1	4844	79.059	66.231	1	193700			300	1445	250	250	300	300		
ADLDVSGPK	9	Unmodified	_ADLDVSGPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.234907	900.455261	0.047188	2.1293E-05	-0.23895	-0.00010782	-0.19176	-8.6529E-05	451.235038152082	4.379	0.27485	4.379	4.2549	4.5297	0	801	58	0.78619514174348	0.0388663471360342	0.78619514174348	319.719158089103	0	15.8056379702052						757	32	4	NaN	NaN	NaN	0.0012131	1	2329	65.156	0	1	522860			301	1584	251	251	301	301		
ADLEMQIENLK	11	Unmodified	_ADLEMQIENLK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.331753	1302.64895	1.2464	0.00081304	1.2822	0.00083643	2.5286	0.0016495	652.333253295689	12.148	0.30154	12.148	12.059	12.361	0	498	70	0.991429299781895	0.0464391008964484	0.991429299781895	401.305670565811	0	18.7973812452612						1274	35	5	NaN	NaN	NaN	2.4249E-07	1	12428	151.22	99.357	1	1033000		+	302	36	252	252	302	302		
ADLEMQIENLK	11	Oxidation (M)	_ADLEM(Oxidation (M))QIENLK_	ADLEM(1)QIENLK	ADLEM(110)QIENLK	0	1	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.32921	1318.64387	0.91496	0.00060417	2.6031	0.0017189	3.5181	0.0023231	660.330009746186	11.509	0.13309	11.509	11.456	11.589	0	501	34	0.98941132619024	0.0221977126906285	0.98941132619024	400.437857708877	0	8.9839324460728						282	16	5	NaN	NaN	NaN	0.00011984	1	12928	114.39	87.447	1	136720		+	303	36	252	253	303	303	15	
ADLFPILMR	9	Unmodified	_ADLFPILMR_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.30207	1074.58959	-0.98977	-0.0005328	-2.9492	-0.0015876	-3.939	-0.0021204	538.301646046632	16.918	0.23949	16.918	16.847	17.087	0	672	52	0.873923798053065	0.0345823239613182	0.873923798053065	354.529110484287	0	14.029187189775						628	28	4	NaN	NaN	NaN	0.019223	1	6083	56.014	45.926	1	165720			304	351	253	254	304	304		
ADLINNLGTIAK	12	Unmodified	_ADLINNLGTIAK_			0	0	0	P08238;Q58FF8;P07900;Q14568	P08238;Q58FF8;P07900	P08238	HSP90AB1;HSP90AB2P;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.856252	1241.69795	1.5807	0.00098295	-0.037245	-2.3161E-05	1.5434	0.00095979	621.855648660725	12.245	0.33699	12.245	12.112	12.449	0	549	70	0.957085760909907	0.0465227050214623	0.957085760909907	387.603765804747	0	18.8409193807238						1852	39	5	NaN	NaN	NaN	0.023027	1	10682	54.584	38.126	1	4664400			305	579;567;1959	254	255	305	305		
ADLIPLLLK	9	Unmodified	_ADLIPLLLK_			0	0	0	Q96NW4	Q96NW4	Q96NW4	ANKRD27	Ankyrin repeat domain-containing protein 27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.328611	994.642668	-1.9732	-0.00098332	-0.73524	-0.00036639	-2.7085	-0.0013497	498.328348485803	17.051	0.070941	17.051	17.007	17.078	0	699	19	0.85560534332665	0.0122182397149359	0.85560534332665	347.450627220141	0	4.96167431116635						84	9	2	NaN	NaN	NaN	0.0091961	1	4163	41.025	4.4551	1	17955			306	2590	255	256	306	306		
ADLLLSTQPGREEGSPLELER	21	Unmodified	_ADLLLSTQPGREEGSPLELER_			0	0	1	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.736044	2309.1863	2.2383	0.0017252	-1.2336	-0.00095075	1.0048	0.00077441	771.06953837014	12.751	0.21285	12.751	12.68	12.893	0	567	205	0.944945209309785	0.137365366270447	0.944945209309785	571.101482186674	0	83.0202254112376						3655	25	6	NaN	NaN	NaN	1.7075E-22	1	35714	193.56	177.45	1	2492300			307	576	256	257	307	307		
ADLNQGIGEPQSPSR	15	Unmodified	_ADLNQGIGEPQSPSR_			0	0	0	Q96C19	Q96C19	Q96C19	EFHD2	EF-hand domain-containing protein D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.8868	1567.75905	2.1944	0.0017224	-2.3614	-0.0018535	-0.16704	-0.00013111	785.38727791896	5.9219	0.18627	5.9219	5.8509	6.0372	0	435	40	1.03374239103424	0.0261540485744427	1.03374239103424	417.689579076313	0	10.5676942678833						394	22	3	NaN	NaN	NaN	0.00013653	1	20585	69.327	63.831	1	125410			308	2488	257	258	308	308		
ADLPEGVAVSGPSPAEFCR	19	Unmodified	_ADLPEGVAVSGPSPAEFCR_			0	0	0	Q8IXI1	Q8IXI1	Q8IXI1	RHOT2	Mitochondrial Rho GTPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.967464	1957.92038	1.5027	0.0014726	-1.2778	-0.0012522	0.22494	0.00022043	980.467998386323	12.29	0.1153	12.29	12.245	12.361	0	231	52	1.16991841121525	0.0339012683335864	1.16991841121525	471.886630689011	0	13.674077727696						309	14	4	NaN	NaN	NaN	0.0028693	1	30854	34.338	26.762	1	49817			309	2212	258	259	309	309		
ADLQNHLDTAQNALQDK	17	Unmodified	_ADLQNHLDTAQNALQDK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.313299	1893.91807	0.9518	0.00060184	0.18472	0.0001168	1.1365	0.00071864	632.313345560159	7.66	0.062203	7.66	7.6334	7.6956	0	681	28	0.867820189810857	0.0183133685890362	0.867820189810857	525.175787742714	0	11.082638878298						122	8	3	NaN	NaN	NaN	2.9445E-07	1	29468	113.34	95.241	1	26605			310	1810	259	260	310	310		
ADLQNHLDTAQNALQDK	17	Unmodified	_ADLQNHLDTAQNALQDK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.96631	1893.91807	2.9108	0.0027593	-0.48177	-0.00045671	2.429	0.0023026	948.466837241879	7.66	0.044326	7.66	7.6422	7.6865	8.8818E-16	237	28	1.16593139812432	0.0179452593666323	1.16593139812432	470.390308755192	0	7.23994233943949						86	6	2	NaN	NaN	NaN	0.051527	1	29469	24.164	23.425	1	19182			311	1810	259	260	311	311		
ADLSLADALTEPSPDIEGEIK	21	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADLSLADALTEPSPDIEGEIK_			1	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1113.55482	2225.09509	0.21276	0.00023692	2.4648	0.0027447	2.6776	0.0029816	1114.05862539597	19.392	0.044362	19.392	19.383	19.428	0	72	34	1.27517645957152	0.0217682430825723	1.27517645957152	513.907524386494	0	8.77279675988302						141	6	3	NaN	NaN	NaN	1.0141E-09	1	34943	93.649	88.833	1	22598			312	869	260	261	312	312		
ADLTAEMISAPLGDFR	16	Unmodified	_ADLTAEMISAPLGDFR_			0	0	0	Q9H3Q1	Q9H3Q1	Q9H3Q1	CDC42EP4	Cdc42 effector protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.924537	1705.83452	1.147	0.00097946	-0.93122	-0.00079519	0.21579	0.00018426	853.924423226837	17.122	0.22164	17.122	16.945	17.167	0	336	88	1.09998710857178	0.0580948088682667	1.09998710857178	444.141020244203	0	23.4569000678068						467	26	2	NaN	NaN	NaN	4.5387E-05	1	24652	84.999	77.423	1	137910			313	2883	261	262	313	313		
ADLTALFLPR	10	Unmodified	_ADLTALFLPR_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.824224	1115.63389	-0.54805	-0.00030626	-0.84009	-0.00046946	-1.3881	-0.00077573	558.823780946545	16.821	0.20395	16.821	16.714	16.918	0	612	82	0.914549654013882	0.0547879131798028	0.914549654013882	370.837192140768	0	22.2157384212863						809	24	3	NaN	NaN	NaN	4.698E-05	1	7155	94.806	79.224	1	202790			314	1621	262	263	314	314		
ADLTEYLSTHYK	12	Unmodified	_ADLTEYLSTHYK_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.90503	1439.69326	-0.6686	-0.00032153	-0.43001	-0.0002068	-1.0986	-0.00052833	480.904738828303	10.649	0.19507	10.649	10.596	10.791	0	762	34	0.812773098473386	0.0224671474092853	0.812773098473386	492.988650592028	0	13.6274794340015						592	23	5	NaN	NaN	NaN	0.049981	1	16665	27.589	16.234	1	362870			315	927	263	264	315	315		
ADLTEYLSTHYK	12	Unmodified	_ADLTEYLSTHYK_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.853906	1439.69326	1.9271	0.0013891	1.3666	0.00098512	3.2937	0.0023743	720.854772755281	10.658	0.13299	10.658	10.605	10.738	0	396	37	1.05987478976334	0.0241005916389636	1.05987478976334	428.581860561916	0	9.74556287689069						384	16	4	NaN	NaN	NaN	2.6551E-07	1	16666	113.46	88.638	1	109320			316	927	263	264	316	316		
ADMGGAATICSAIVSAAK	18	Unmodified	_ADMGGAATICSAIVSAAK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.416022	1692.81749	1.4411	0.0012212	2.3915	0.0020266	3.8325	0.0032477	847.417929573705	13.717	0.088658	13.717	13.691	13.779	0	285	31	1.13399579921816	0.0199817200584811	1.13399579921816	457.90104805142	0	8.06850480659358						201	11	3	NaN	NaN	NaN	8.5704E-05	1	24283	83.474	77.447	1	43276			317	880	264	265	317	317		
ADMVIEAVFEDLSLK	15	Unmodified	_ADMVIEAVFEDLSLK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.431664	1678.84877	1.451	0.0012195	-2.9184	-0.0024527	-1.4674	-0.0012333	840.42914661257	20.084	0.017725	20.084	20.084	20.102	0	333	25	1.10198982404297	0.0160184153365035	1.10198982404297	445.007300082688	0	6.46858220010444						71	3	4	NaN	NaN	NaN	0.00022181	1	23888	45.183	38.437	1	18922			318	1026	265	266	318	318		
ADNDAGNAAIDSLLNYETVK	20	Unmodified	_ADNDAGNAAIDSLLNYETVK_			0	0	0	O75027	O75027	O75027	ABCB7	ATP-binding cassette sub-family B member 7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.50292	2092.99129	1.8705	0.0019594	2.3747	0.0024875	4.2452	0.0044468	1047.50818423115	15.775	0.19509	15.775	15.642	15.837	0	180	40	1.203763835057	0.025842737786582	1.203763835057	485.31755942664	0	10.4189327393215						301	23	3	NaN	NaN	NaN	1.2126E-05	1	33231	73.305	63.284	1	63465			319	298	266	267	319	319		
ADNFEYSDPVDGSISR	16	Unmodified	_ADNFEYSDPVDGSISR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.392113	1770.76967	3.0176	0.0026748	-0.91736	-0.00081314	2.1002	0.0018616	886.391238835175	10.019	0.16846	10.019	9.9662	10.135	0	354	70	1.08796502040166	0.0461069279389572	1.08796502040166	439.157015532373	0	18.6110587099237						1010	20	5	NaN	NaN	NaN	5.4384E-25	1	26428	218.58	199.03	1	358100			320	991	267	268	320	320		
ADPDGPEAQAEACSGER	17	Unmodified	_ADPDGPEAQAEACSGER_			0	0	0	Q9NX24	Q9NX24	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.363029	1758.71151	3.7063	0.0032629	-0.69456	-0.00061146	3.0118	0.0026515	880.362668949279	4.4499	0.20395	4.4499	4.3347	4.5386	0	390	70	1.06389100039157	0.0461768974205818	1.06389100039157	429.46241252522	0	18.6402946936047						743	24	3	NaN	NaN	NaN	0.0001945	1	26098	78.71	76.727	1	166530			321	3093	268	269	321	321		
ADPEAAWEPTEAEAR	15	Unmodified	_ADPEAAWEPTEAEAR_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.870816	1641.72708	1.8626	0.0015308	-0.93788	-0.00077082	0.92475	0.00076003	822.371404109	8.7156	0.1332	8.7156	8.6446	8.7778	0	414	40	1.04781950764076	0.0261287930352008	1.04781950764076	423.210465983988	0	10.5533239220983						351	16	3	NaN	NaN	NaN	0.013871	1	22791	27.357	22.83	1	71651			322	3188	269	270	322	322		
ADPSLNPEQLK	11	Unmodified	_ADPSLNPEQLK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.31696	1210.61937	1.1056	0.00067033	2.2161	0.0013437	3.3217	0.002014	606.318478331781	7.4826	0.20395	7.4826	7.4028	7.6068	0	549	49	0.957085760909907	0.0323703311033066	0.957085760909907	387.71315171679	0	13.1131436771636						486	24	3	NaN	NaN	NaN	0.003349	1	9753	64.064	59.157	1	107790			323	3294	270	271	323	323		
ADPTVESEEAFK	12	Unmodified	_ADPTVESEEAFK_			0	0	0	Q15014	Q15014	Q15014	MORF4L2	Mortality factor 4-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.809165	1321.60378	1.2243	0.00081025	1.4229	0.0009417	2.6472	0.0017519	661.810273058177	6.7377	0.13301	6.7377	6.7023	6.8353	0	567	28	0.944945209309785	0.0182171330553085	0.944945209309785	382.432504928379	0	7.37272781354591						206	16	3	NaN	NaN	NaN	0.06657	1	13022	13.175	7.3085	1	41976			324	1791	271	272	324	324		
ADQDRLDLEER	11	Unmodified	_ADQDRLDLEER_			0	0	1	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.88815	1358.64262	-0.33383	-0.00015152	-1.2981	-0.00058919	-1.6319	-0.00074071	453.887460619022	5.0174	0.10639	5.0174	4.9908	5.0972	0	843	25	0.757518876820989	0.016402423941871	0.757518876820989	459.734521941878	0	9.95455131263486						147	13	3	NaN	NaN	NaN	0.0051056	1	14144	43.168	40.066	1	29427			325	1764	272	273	325	325		
ADQELLLYSHDNIICGITSVAFSK	24	Unmodified	_ADQELLLYSHDNIICGITSVAFSK_			0	0	0	Q9HAV0	Q9HAV0	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	898.786299	2693.33707	0.12854	0.00011553	-0.27989	-0.00025156	-0.15135	-0.00013604	899.120596106941	18.798	0.062083	18.798	18.772	18.834	0	537	22	0.965173861991602	0.0141492814478524	0.965173861991602	582.829552530173	0	8.54418017273974						133	8	4	NaN	NaN	NaN	1.0912E-06	1	37587	63.355	56.218	1	25267			326	2946	273	274	326	326		
ADQELLMYSHDNIICGITSVAFSR	24	Unmodified	_ADQELLMYSHDNIICGITSVAFSR_			0	0	0	P62879	P62879	P62879	GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	914.107155	2739.29964	0.31811	0.00029078	-0.87419	-0.0007991	-0.55608	-0.00050832	914.44060426757	18.683	0.053215	18.683	18.665	18.718	0	492	58	0.995464410099171	0.0383468163540439	0.995464410099171	601.068993448405	0	23.1540998091331						278	7	4	NaN	NaN	NaN	3.3155E-06	1	37728	48.945	48.248	1	47589			327	1410	274	275	327	327		
ADQELMTYSHDNIICGITSVSFSK	24	Unmodified	_ADQELMTYSHDNIICGITSVSFSK_			0	0	0	P62873	P62873	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.091282	2715.25202	0.76858	0.0006964	0.273	0.00024736	1.0416	0.00094376	906.425808405191	15.819	0.070941	15.819	15.783	15.854	0	483	40	1.00151498427745	0.0262119132032216	1.00151498427745	604.749420312145	0	15.827660657875						309	9	5	NaN	NaN	NaN	2.2722E-06	1	37648	38.942	35.368	1	61421			328	1408	275	276	328	328		
ADQIETQQLMR	11	Unmodified	_ADQIETQQLMR_			0	0	0	Q9H4M9;Q9NZN3	Q9H4M9	Q9H4M9	EHD1;EHD3	EH domain-containing protein 1;EH domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.832451	1331.65035	1.7184	0.0011459	-1.2708	-0.00084739	0.44764	0.0002985	666.832058459832	7.3674	0.21281	7.3674	7.2698	7.4826	0	537	52	0.965173861991602	0.0343530427274077	0.965173861991602	390.58883930582	0	13.9020705117667						403	25	3	NaN	NaN	NaN	0.00071255	1	13344	97.277	91.411	1	109350			329	2897	276	277	329	329		
ADQLTEEQIAEFK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADQLTEEQIAEFK_			1	0	0	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.380485	1562.74642	2.2609	0.0017689	1.7794	0.0013922	4.0403	0.0031611	782.381811694407	14.577	0.25714	14.577	14.506	14.764	-1.7764E-15	372	76	1.07593298845566	0.0501300468316004	1.07593298845566	434.749125950109	0	20.2559028096705						1476	30	6	NaN	NaN	NaN	9.4571E-08	1	20437	163.59	138.76	1	1993400			330	619	277	278	330	330		
ADQQYECVAEIGEGAYGK	18	Unmodified	_ADQQYECVAEIGEGAYGK_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.438737	1986.86292	2.4525	0.0024388	-0.47019	-0.00046758	1.9823	0.0019713	994.438356838008	10.507	0.062113	10.507	10.48	10.543	0	255	49	1.15396378101328	0.0319355989061636	1.15396378101328	465.403601286229	0	12.8799040184002						199	8	2	NaN	NaN	NaN	5.0636E-07	1	31379	105.78	94.1	1	73508			331	1500	278	279	331	331		
ADRDESSPYAAMLAAQDVAQR	21	Unmodified	_ADRDESSPYAAMLAAQDVAQR_			0	0	1	P62263	P62263	P62263	RPS14	40S ribosomal protein S14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.690329	2264.04916	1.2616	0.00095336	2.131	0.0016104	3.3926	0.0025638	756.026508475722	11.873	0.21284	11.873	11.784	11.997	0	414	49	1.04781950764076	0.0321740540769211	1.04781950764076	633.351607123893	0	19.4475181161594						898	25	5	NaN	NaN	NaN	4.7046E-09	1	35310	140.78	138.54	1	411920			332	1376	279	280	332	332		
ADSGLREPQEDSQK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADSGLREPQEDSQK_			1	0	1	Q8NFQ8	Q8NFQ8	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.373723	1600.73289	2.8626	0.002294	-1.8684	-0.0014973	0.99424	0.00079676	801.372093842694	4.5386	0.12411	4.5386	4.4677	4.5918	0	390	34	1.06389100039157	0.0220906848842135	1.06389100039157	429.79376145591	0	8.92425873141974						233	15	3	NaN	NaN	NaN	0.0040478	1	21597	46.358	34.401	1	42132			333	2320	280	281	333	333		
ADSGPTQPPLSLSPAPETK	19	Unmodified	_ADSGPTQPPLSLSPAPETK_			0	0	0	O15027	O15027	O15027	SEC16A	Protein transport protein Sec16A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.983637	1891.95272	2.55	0.0024148	-2.298	-0.0021761	0.25208	0.00023871	947.481962901818	9.842	0.15072	9.842	9.7889	9.9396	0	243	22	1.16194328902838	0.0139612606288984	1.16194328902838	468.784869896156	0	5.63265678222325						172	18	2	NaN	NaN	NaN	0.0016794	1	29416	41.499	37.193	1	38579			334	138	281	282	334	334		
ADSRDPASDQMQHWK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ADSRDPASDQMQHWK_			1	0	1	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.268925	1812.78495	0.11473	6.9443E-05	1.1632	0.00070404	1.2779	0.00077348	605.270020798259	6.2323	0.12419	6.2323	6.1791	6.3033	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	522.882379304061	0	11.0908603238695						246	15	4	NaN	NaN	NaN	5.8916E-08	1	27543	145.08	140.55	1	60518			335	501	282	283	335	335		
ADTLTPEECQQFK	13	Unmodified	_ADTLTPEECQQFK_			0	0	0	Q16181	Q16181	Q16181	SEPT7	Septin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.858863	1565.70317	2.4764	0.0019411	-2.216	-0.0017371	0.26034	0.00020407	783.857251718746	6.9594	0.36362	6.9594	6.8441	7.2077	0	414	55	1.04781950764076	0.0361908186814239	1.04781950764076	423.382385864516	0	14.623277241928						905	42	3	NaN	NaN	NaN	0.01425	1	20512	36.24	33.569	1	336590			336	1877	283	284	336	336		
ADTQTYQPYNK	11	Unmodified	_ADTQTYQPYNK_			0	0	0	P84090	P84090	P84090	ERH	Enhancer of rudimentary homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.809499	1327.60444	2.4418	0.0016233	-0.86552	-0.00057541	1.5763	0.0010479	664.809059390159	3.6608	0.39014	3.6608	3.5898	3.98	0	591	64	0.928742107665821	0.0425361068960246	0.928742107665821	375.857313242455	0	17.2141509701919						1173	45	3	NaN	NaN	NaN	7.017E-17	1	13199	154.81	130.69	1	482360			337	1484	284	285	337	337		
ADTSLNNCEGAAGSTSEK	18	Unmodified	_ADTSLNNCEGAAGSTSEK_			0	0	0	O76080	O76080	O76080	ZFAND5	AN1-type zinc finger protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.389244	1810.76393	2.5082	0.0022734	-0.92469	-0.00083813	1.5835	0.0014353	906.389922346352	3.4657	0.035587	3.4657	3.4479	3.4834	0	378	34	1.07192009927972	0.0220663300779218	1.07192009927972	432.60622856697	0	8.90554420962724						73	5	2	NaN	NaN	NaN	5.1766E-14	1	27486	171.14	167.16	1	12904			338	382	285	286	338	338		
ADVDVQPYAFTTK	13	Unmodified	_ADVDVQPYAFTTK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.861731	1453.70891	1.834	0.0013349	0.095183	6.928E-05	1.9292	0.0014042	727.861682043884	10.126	0.14188	10.126	10.073	10.214	0	462	43	1.01562323939346	0.0281989788945491	1.01562323939346	410.650169065127	0	11.4017826703396						308	17	3	NaN	NaN	NaN	0.0056147	1	17075	44.82	40.292	1	175990			339	2808	286	287	339	339		
ADVDVSGPK	9	Unmodified	_ADVDVSGPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.227082	886.439611	-0.40809	-0.00018128	4.3521	0.0019333	3.944	0.0017521	444.22922476378	3.2262	0.3814	3.2262	3.1464	3.5278	0	813	55	0.778007628350577	0.0368386942008244	0.778007628350577	316.464672750191	0	14.9846156772579						523	44	2	NaN	NaN	NaN	0.02502	1	2094	49.96	29.727	1	142570			340	1584	287	288	340	340		
ADVEEEFLALR	11	Unmodified	_ADVEEEFLALR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.330067	1290.64558	-0.1577	-0.00010193	0.098715	6.3802E-05	-0.058985	-3.8123E-05	646.33008435478	14.826	0.11527	14.826	14.781	14.897	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	381.70790224887	0	9.83478664805813						279	14	4	NaN	NaN	NaN	8.5203E-08	1	12094	142.56	113.25	1	78513			341	1074	288	289	341	341		
ADVFHAYLSLLK	12	Unmodified	_ADVFHAYLSLLK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.88227	1375.74999	0.0033868	2.3331E-06	0.89961	0.00061973	0.903	0.00062206	688.883327011633	17.273	0.12414	17.273	17.229	17.353	0	447	28	1.02569221487577	0.0181191516407753	1.02569221487577	414.94285417568	0	7.33008634366576						262	15	4	NaN	NaN	NaN	0.00018793	1	14684	69.276	38.357	1	74949			342	2175	289	290	342	342		
ADVIQATGDAICIFR	15	Unmodified	_ADVIQATGDAICIFR_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.615373	1648.82429	-0.88721	-0.00048851	-2.1492	-0.0011834	-3.0364	-0.0016719	550.615036242711	15.987	0.12411	15.987	15.961	16.085	1.7764E-15	672	25	0.873923798053065	0.0162729009073457	0.873923798053065	529.440177662422	0	9.85844254002677						236	15	4	NaN	NaN	NaN	0.0028877	1	22997	51.454	49.152	1	52854			343	1579	290	291	343	343		
ADVIQATGDAICIFR	15	Unmodified	_ADVIQATGDAICIFR_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.419422	1648.82429	1.7178	0.0014179	-2.5394	-0.0020961	-0.82166	-0.00067822	825.418057012874	15.996	0.23942	15.996	15.952	16.191	0	384	109	1.06790610341098	0.0722221588499397	1.06790610341098	431.307837644251	0	29.1692154058034						1196	28	5	NaN	NaN	NaN	1.9287E-12	1	22998	187.51	179.95	1	455970			344	1579	290	291	344	344		
ADVLTTGAGNPVGDK	15	Unmodified	_ADVLTTGAGNPVGDK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.862263	1413.70997	2.2427	0.0015875	-1.2293	-0.00087018	1.0134	0.00071734	707.861467318145	6.8619	0.16844	6.8619	6.7998	6.9683	0	495	64	0.993446994398923	0.0423423350766804	0.993446994398923	401.790703715368	0	17.124976675484						812	20	4	NaN	NaN	NaN	4.1598E-06	1	15877	84.999	63.849	1	339950			345	501	292	292	345	345		
ADVVESWIGEK	11	Unmodified	_ADVVESWIGEK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.81151	1231.60847	0.34748	0.00021433	-1.2567	-0.00077515	-0.90922	-0.00056082	616.810535321894	11.687	0.12412	11.687	11.642	11.766	0	615	52	0.912521036363781	0.0344769526882287	0.912521036363781	369.58908897407	0	13.9638485326543						395	15	3	NaN	NaN	NaN	0.00019895	1	10357	90.142	67.089	1	213750			346	1703	293	293	346	346		
ADVVVSGPK	9	Unmodified	_ADVVVSGPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.247818	870.481082	-0.75115	-0.00032769	0.92798	0.00040483	0.17683	7.7143E-05	436.248211956488	3.7494	0.15958	3.7494	3.7051	3.8647	0	813	28	0.778007628350577	0.0184257549517962	0.778007628350577	316.553142298694	0	7.49700956221028						227	19	3	NaN	NaN	NaN	0.0077402	1	1869	48.157	41.927	1	48780			347	1584	294	294	347	347		
ADWLSHYWMPK	11	Unmodified	_ADWLSHYWMPK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.337172	1432.65979	2.4332	0.0017454	0.36489	0.00026175	2.7981	0.0020072	717.337323718893	13.859	0.16848	13.859	13.779	13.948	0	417	67	1.04580932352505	0.0442576592697037	1.04580932352505	422.913965939499	0	17.897318166815						886	20	5	NaN	NaN	NaN	1.5464E-06	1	16463	123.5	115.32	1	370950			348	581	295	295	348	348		
ADWWTNTAHYNR	12	Unmodified	_ADWWTNTAHYNR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.232251	1533.67492	-0.69894	-0.00035802	3.8242	0.0019589	3.1253	0.0016009	512.233534604877	8.4051	0.10641	8.4051	8.352	8.4584	0	747	28	0.822982596624503	0.0183719873373771	0.822982596624503	498.890384153212	0	11.1370615344663						226	13	4	NaN	NaN	NaN	0.0031597	1	19534	41.796	38.693	1	61314			349	2064	296	296	349	349		
ADYEIASK	8	Unmodified	_ADYEIASK_			0	0	0	Q9Y383;Q9NQ29	Q9Y383;Q9NQ29	Q9Y383	LUC7L2;LUC7L	Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.721633	895.428712	-0.14645	-6.5715E-05	1.3849	0.00062146	1.2385	0.00055574	448.722656475067	3.7317	0.07979	3.7317	3.6785	3.7583	0	795	25	0.790287188799094	0.0163636329074536	0.790287188799094	321.410343667221	0	6.65510076712877						97	10	2	NaN	NaN	NaN	0.016582	1	2254	69.905	54.406	1	41544			350	3372;2995	297	297	350	350		
AEAEAWYQTK	10	Unmodified	_AEAEAWYQTK_			0	0	0	P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.782753	1195.55095	1.6954	0.0010152	2.4663	0.0014768	4.1617	0.002492	598.784517000372	6.1791	0.39905	6.1791	6.0993	6.4983	0	579	52	0.936845902828289	0.034438755237733	0.936845902828289	379.567940374915	0	13.9530389738578						753	46	5	NaN	NaN	NaN	2.111E-10	1	9300	184.04	150.64	1	589530		+	351	39	299	298	351	351		
AEAESMYQIK	10	Unmodified	_AEAESMYQIK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.278989	1168.54342	2.026	0.0011858	2.211	0.001294	4.2369	0.0024798	585.280944576872	6.1259	0.30151	6.1259	6.055	6.3565	0	594	82	0.926715457081489	0.0547423659121806	0.926715457081489	375.562530300793	0	22.1849989654619						1317	35	5	NaN	NaN	NaN	0.00014916	1	8565	83.623	44.613	1	866080		+	352	28	300	299	352	352		
AEAESMYQIK	10	Oxidation (M)	_AEAESM(Oxidation (M))YQIK_	AEAESM(1)YQIK	AEAESM(46)YQIK	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.276446	1184.53834	2.0217	0.0011994	2.2145	0.0013138	4.2361	0.0025132	593.278239837781	4.1839	0.1951	4.1839	4.0864	4.2815	0	606	37	0.918606045818476	0.0243349817538098	0.918606045818476	372.217444698853	0	9.86048890754432						487	23	4	NaN	NaN	NaN	0.021673	1	8987	46.447	28.977	1	140420		+	353	28	300	300	353	353	4	
AEAETLPSLSITK	13	Unmodified	_AEAETLPSLSITK_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.371932	1358.72931	1.5895	0.0010815	-0.073446	-4.9971E-05	1.5161	0.0010315	680.372172097718	11.03	0.18621	11.03	10.968	11.154	0	492	46	0.995464410099171	0.0302696119755409	0.995464410099171	402.764413900395	0	12.2470702142998						513	22	4	NaN	NaN	NaN	0.00037285	1	14159	83.775	50.349	1	139080			354	422	301	301	354	354		
AEAFVNTWSSMGQETVEK	18	Unmodified	_AEAFVNTWSSMGQETVEK_			0	0	0	Q9Y6G5	Q9Y6G5	Q9Y6G5	COMMD10	COMM domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.46475	2012.91496	2.766	0.0027866	0.75914	0.00076481	3.5251	0.0035514	1007.96680672745	12.91	0.079834	12.91	12.866	12.946	0	189	31	1.1977968526266	0.0198940394269433	1.1977968526266	483.03847655078	0	8.022718106296						188	10	3	NaN	NaN	NaN	0.00077467	1	31846	46.823	39.616	1	42957			355	3464	302	302	355	355		
AEAGAGSATEFQFR	14	Unmodified	_AEAGAGSATEFQFR_			0	0	0	P46783;Q9NQ39	P46783	P46783	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.338955	1440.66336	2.29	0.0016519	1.0974	0.00079163	3.3874	0.0024435	721.339818316238	8.5293	0.41697	8.5293	8.4495	8.8665	0	474	79	1.00756305028564	0.0524129921964456	1.00756305028564	407.425938158481	0	21.1941203195931						1533	48	6	NaN	NaN	NaN	2.2091E-24	1	16685	219.93	193.35	1	1817500			356	1091	303	303	356	356		
AEAGDNLGALVR	12	Unmodified	_AEAGDNLGALVR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.314751	1184.61495	1.2759	0.000757	0.037652	2.2339E-05	1.3135	0.00077934	593.314797927288	8.8576	0.36382	8.8576	8.7511	9.1149	0	612	52	0.914549654013882	0.0344817318374574	0.914549654013882	370.573535751742	0	13.9719229347126						881	42	5	NaN	NaN	NaN	5.336E-17	1	9001	207.6	169.88	1	869800			357	1131	304	304	357	357		
AEAGPEGVAPAPEGEK	16	Unmodified	_AEAGPEGVAPAPEGEK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.865002	1507.71545	2.5216	0.0019034	-1.0424	-0.0007869	1.4791	0.0011165	754.864264246664	4.7425	0.2926	4.7425	4.6627	4.9553	0	465	61	1.01360860968299	0.0403121021954936	1.01360860968299	409.697168446732	0	16.2940152301926						1032	34	4	NaN	NaN	NaN	9.1399E-07	1	18722	108.5	101.75	1	373720			358	3410	305	305	358	358		
AEAGVPAEFSIWTR	14	Unmodified	_AEAGVPAEFSIWTR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.388448	1532.76234	1.5635	0.0011998	-0.7958	-0.00061068	0.76766	0.00058909	767.389917742922	14.985	0.24827	14.985	14.861	15.109	0	441	124	1.02971785871157	0.0825885740560371	1.02971785871157	416.146598020165	0	33.3770593934929						1202	29	5	NaN	NaN	NaN	1.2324E-07	1	19513	117.21	83.457	1	475370			359	792	306	306	359	359		
AEAQQVEALPGPSLDQWHR	19	Unmodified	_AEAQQVEALPGPSLDQWHR_			0	0	0	Q66PJ3	Q66PJ3	Q66PJ3	ARL6IP4	ADP-ribosylation factor-like protein 6-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.355498	2131.04467	1.3921	0.00099025	-1.3979	-0.0009944	-0.0058388	-4.1534E-06	711.689063605052	11.314	0.079853	11.314	11.27	11.35	0	576	91	0.938871150116794	0.0607785281627277	0.938871150116794	567.713898755217	0	36.751385085774						556	10	3	NaN	NaN	NaN	7.8033E-06	1	33758	84.266	78.363	1	124210			360	2019	307	307	360	360		
AEASAAGADSGAAVAAHR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEASAAGADSGAAVAAHR_			1	0	0	Q9Y4L5	Q9Y4L5	Q9Y4L5	RNF115	E3 ubiquitin-protein ligase RNF115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.887332	1623.76011	2.0772	0.0016886	-0.20313	-0.00016512	1.8741	0.0015234	812.887405202845	5.4962	0.026596	5.4962	5.4873	5.5139	0	231	16	1.16991841121525	0.0099668481477011	1.16991841121525	472.569514074258	0	4.02594620347799						39	4	2	NaN	NaN	NaN	1.2832E-05	1	22300	75.012	65.27	1	6925.3			361	3411	308	308	361	361		
AEASIQAGAGDGEWEESEVK	20	Unmodified	_AEASIQAGAGDGEWEESEVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.96363	2061.91271	2.2079	0.0022785	-1.0442	-0.0010776	1.1637	0.0012009	1032.46401513544	8.7599	0.11538	8.7599	8.7334	8.8487	0	234	46	1.16792504164217	0.0299046606743485	1.16792504164217	470.915336451296	0	12.0577629906126						372	14	4	NaN	NaN	NaN	2.2638E-11	1	32726	120.75	116.9	1	75957			362	1584	309	309	362	362		
AEASSGDHPTDTEMK	15	Unmodified	_AEASSGDHPTDTEMK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.333209	1574.65187	2.711	0.0021371	-2.818	-0.0022215	-0.107	-8.435E-05	788.330801161645	2.1887	0.15075	2.1887	2.1532	2.304	0	468	25	1.01159370163332	0.0161181521941178	1.01159370163332	408.724609917828	0	6.51238284451568						189	18	3	NaN	NaN	NaN	0.0005521	1	20803	49.097	48.134	1	32298			363	1530	310	310	363	363		
AEASSGDHPTDTEMK	15	Unmodified	_AEASSGDHPTDTEMK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.891232	1574.65187	0.89222	0.00046921	0.027942	1.4694E-05	0.92017	0.00048391	525.891357509729	2.1887	0.30147	2.1887	2.1532	2.4547	0	723	31	0.839303037468863	0.0203948812138425	0.839303037468863	508.665513298005	0	12.3604613091559						486	35	4	NaN	NaN	NaN	0.00044122	1	20805	50.116	46.611	1	101050			364	1530	310	310	364	364		
AEAVFHAPK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEAVFHAPK_			1	0	0	Q8NCE0	Q8NCE0	Q8NCE0	TSEN2	tRNA-splicing endonuclease subunit Sen2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.266542	1010.51853	0.28629	0.00014494	0.23037	0.00011663	0.51666	0.00026157	506.266496302901	8.3253	0.10638	8.3253	8.2544	8.3608	0	654	28	0.886123392477847	0.018290507163651	0.886123392477847	359.766487540554	0	7.42595396246304						127	13	2	NaN	NaN	NaN	0.0081194	1	4519	51.864	47.971	1	25486			365	2299	311	311	365	365		
AEAYVLACTDQQYLVPK	17	Unmodified	_AEAYVLACTDQQYLVPK_			0	0	0	O95602	O95602	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.990408	1967.96626	2.5139	0.0024761	1.2701	0.001251	3.784	0.0037272	985.494756389015	12.866	0.088682	12.866	12.83	12.919	0	174	40	1.20774045859593	0.0258391918744247	1.20774045859593	487.124642729624	0	10.4218642512684						309	11	4	NaN	NaN	NaN	0.011217	1	31073	49.097	43.709	1	58529			366	444	312	312	366	366		
AECEILMMVGLPAAGK	16	Unmodified	_AECEILMMVGLPAAGK_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.422261	1688.82997	0.57034	0.00048218	0.8584	0.00072571	1.4287	0.0012079	845.423426211038	17.238	0.088688	17.238	17.202	17.291	0	246	34	1.1599488233373	0.0219421415899306	1.1599488233373	468.389717426066	0	8.86028184369462						222	11	4	NaN	NaN	NaN	0.00014399	1	24178	73.655	68.267	1	43473			367	2746	313	313	367	367		
AECEILMMVGLPAAGK	16	Unmodified	_AECEILMMVGLPAAGK_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.422261	1688.82997	1.0637	0.00089924	2.5313	0.00214	3.5949	0.0030392	845.925787629304	17.229	0.10644	17.229	17.176	17.282	0	336	64	1.09998710857178	0.0420628401895933	1.09998710857178	444.177047785949	0	16.9850610350918						342	13	3	NaN	NaN	NaN	0.0033897	1	24180	52.837	48.855	1	64399			368	2746	313	313	368	368		
AEDFQIEGYNPHPTIK	16	Unmodified	_AEDFQIEGYNPHPTIK_			0	0	0	P04818	P04818	P04818	TYMS	Thymidylate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.303852	1857.88973	0.18718	0.00011611	0.69223	0.0004294	0.87941	0.0005455	620.304258205754	9.4342	0.10639	9.4342	9.3987	9.5051	0	627	43	0.90440375274676	0.0284223196233265	0.90440375274676	547.392033417034	0	17.2026611851066						381	13	5	NaN	NaN	NaN	0.00010868	1	28648	69.327	67.025	1	107350			369	517	314	314	369	369		
AEDGSVIDYELIDQDAR	17	Unmodified	_AEDGSVIDYELIDQDAR_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.965565	1907.87487	0.24877	0.00015846	-0.26443	-0.00016843	-0.015661	-9.9758E-06	637.299854458337	13.238	0.1152	13.238	13.203	13.318	0	618	31	0.910492137470517	0.0202903977808542	0.910492137470517	550.970142960789	0	12.2784183475836						258	14	4	NaN	NaN	NaN	0.0024665	1	29774	61.194	59.21	1	75449			370	558	315	315	370	370		
AEDGSVIDYELIDQDAR	17	Unmodified	_AEDGSVIDYELIDQDAR_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.944709	1907.87487	2.3739	0.002267	1.0251	0.00097894	3.399	0.0032459	955.447226970401	13.238	0.2483	13.238	13.123	13.371	0	261	73	1.14997238118939	0.0479034164736727	1.14997238118939	463.927019438066	0	19.3254112786134						1505	29	7	NaN	NaN	NaN	4.9194E-26	1	29775	227.95	201.43	1	1208100			371	558	315	315	371	371		
AEDIPQMDDAFSQTVK	16	Unmodified	_AEDIPQMDDAFSQTVK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.914366	1793.81418	1.91	0.001715	1.8368	0.0016493	3.7468	0.0033643	898.417321779697	12.21	0.36359	12.21	12.077	12.44	0	300	55	1.12400150285141	0.0359968140029667	1.12400150285141	453.657843580158	0	14.5286611938816						491	42	2	NaN	NaN	NaN	0.0028937	1	27066	51.829	47.583	1	166940			372	3136	316	316	372	372		
AEDNADTLALVFEAPNQEK	19	Unmodified	_AEDNADTLALVFEAPNQEK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.335769	2073.98548	0.56166	0.00038886	-1.7576	-0.0012168	-1.1959	-0.00082797	692.333147100497	15.287	0.10637	15.287	15.242	15.349	0	510	133	0.983355730988811	0.0890432416521633	0.983355730988811	594.718523352163	0	53.8519922354191						664	13	5	NaN	NaN	NaN	3.6156E-05	1	32923	132.93	127.54	1	205270			373	662	317	317	373	373		
AEDNADTLALVFEAPNQEK	19	Unmodified	_AEDNADTLALVFEAPNQEK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.00002	2073.98548	1.7326	0.0017984	0.45166	0.00046883	2.1843	0.0022673	1038.50271344505	15.304	0.23063	15.304	15.242	15.473	0	189	103	1.1977968526266	0.067676975114735	1.1977968526266	482.941043865205	0	27.2867547914141						1415	27	5	NaN	NaN	NaN	2.4066E-10	1	32924	140.3	136	1	551740			374	662	317	317	374	374		
AEDNADTLALVFEAPNQEK	19	Unmodified	_AEDNADTLALVFEAPNQEK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.00002	2073.98548	0.55439	0.00057545	2.8401	0.002948	3.3945	0.0035235	1038.50457664258	15.304	0.0798	15.304	15.269	15.349	0	96	88	1.2593374219024	0.0574440945740144	1.2593374219024	507.753646295101	0	23.1609479483386						443	10	3	NaN	NaN	NaN	2.4728E-10	1	32925	112.68	101	1	89407			375	662	317	317	375	375		
AEDNFEDIITKPPVR	15	Unmodified	_AEDNFEDIITKPPVR_			0	0	1	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.968581	1742.88391	0.13328	7.7563E-05	0.48319	0.0002812	0.61647	0.00035877	582.302915937759	11.722	0.23059	11.722	11.545	11.775	0	606	61	0.918606045818476	0.0405414565630254	0.918606045818476	556.259504182842	0	24.5497736807353						432	27	4	NaN	NaN	NaN	0.0020801	1	25687	31.04	27.058	1	131910			376	3465	318	318	376	376		
AEDQHLVEMEDTLNK	15	Unmodified	_AEDQHLVEMEDTLNK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.277086	1770.80943	-0.036598	-2.164E-05	-0.23187	-0.0001371	-0.26847	-0.00015874	591.611117328619	9.0528	0.09755	9.0528	9.0262	9.1238	0	696	61	0.857641857947968	0.0407501192915529	0.857641857947968	519.278240282016	0	24.6730614194015						248	12	4	NaN	NaN	NaN	0.0001454	1	26432	58.313	57.431	1	49241			377	914	319	319	377	377		
AEDQHLVEMEDTLNK	15	Unmodified	_AEDQHLVEMEDTLNK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.411991	1770.80943	2.3356	0.0020703	1.2103	0.0010728	3.5459	0.0031431	886.414031097841	9.0528	0.079823	9.0528	9.0174	9.0972	0	303	28	1.12200181823275	0.0179996405017726	1.12200181823275	452.895880453209	0	7.26555242640484						168	10	3	NaN	NaN	NaN	0.0024546	1	26434	38.14	35.839	1	33928			378	914	319	319	378	378		
AEEDAALQAK	10	Unmodified	_AEEDAALQAK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.261653	1044.50875	1.4769	0.0007728	0.78021	0.00040825	2.2571	0.001181	523.262394807689	3.1109	0.15962	3.1109	3.0666	3.2262	0	684	31	0.86578508874114	0.0203496003822382	0.86578508874114	351.355411632475	0	8.25833375030032						198	19	2	NaN	NaN	NaN	0.00058031	1	5332	96.311	77.975	1	56857			379	1666	320	320	379	379		
AEEDTQFNYHR	11	Unmodified	_AEEDTQFNYHR_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.540862	1408.60076	-0.10394	-4.8906E-05	1.1426	0.00053766	1.0387	0.00048875	470.541503082782	4.0775	0.10643	4.0775	4.0509	4.1573	0	825	25	0.769815552739974	0.016388717253182	0.769815552739974	467.030622050822	0	9.94268404441289						214	13	3	NaN	NaN	NaN	4.313E-05	1	15711	111.39	93.055	1	59275			380	1764	321	321	380	380		
AEEDTQFNYHR	11	Unmodified	_AEEDTQFNYHR_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.307655	1408.60076	2.5935	0.0018292	-0.37899	-0.00026731	2.2145	0.0015619	705.307063047315	4.0775	0.09755	4.0775	4.0509	4.1484	0	495	34	0.993446994398923	0.0221946439688537	0.993446994398923	401.804818803069	0	8.97673952267536						193	12	3	NaN	NaN	NaN	2.4684E-05	1	15712	70.389	58.432	1	52216			381	1764	321	321	381	381		
AEEIANEMIEAAK	13	Unmodified	_AEEIANEMIEAAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.845224	1417.6759	2.0781	0.0014751	-0.3303	-0.00023446	1.7478	0.0012406	709.844861769499	10.498	0.29264	10.498	10.33	10.622	0	459	64	1.01763759082241	0.0423072461230747	1.01763759082241	411.56321476633	0	17.1103213750697						714	34	3	NaN	NaN	NaN	0.0058546	1	16004	35.845	26.331	1	242730			382	1136	322	322	382	382		
AEEILEK	7	Unmodified	_AEEILEK_			0	0	0	P62913	P62913	P62913	RPL11	60S ribosomal protein L11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.226551	830.438549	0.066577	2.7711E-05	1.0891	0.00045333	1.1557	0.00048104	416.227292685062	3.847	0.2926	3.847	3.7849	4.0775	0	801	55	0.78619514174348	0.0368489549105325	0.78619514174348	320.123692887682	0	15.0041928507111						554	34	3	NaN	NaN	NaN	0.030925	1	1320	36.57	7.2593	1	198750			383	1415	323	323	383	383		
AEELFLWVPR	10	Unmodified	_AEELFLWVPR_			0	0	0	Q86TU7	Q86TU7	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.342781	1258.67101	-0.14911	-9.3993E-05	-1.4756	-0.00093015	-1.6247	-0.0010241	630.341382471029	17.14	0.13297	17.14	17.087	17.22	0	561	25	0.948993180460448	0.0161896439888687	0.948993180460448	384.269417885086	0	6.55556351664285						185	16	3	NaN	NaN	NaN	0.0011273	1	11176	46.447	26.264	1	36847			384	2159	324	324	384	384		
AEELGLPILGVLR	13	Unmodified	_AEELGLPILGVLR_			0	0	0	P09110	P09110	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.416477	1378.8184	-0.099778	-6.8888E-05	-0.44213	-0.00030525	-0.5419	-0.00037414	690.416181181672	19.135	0.20394	19.135	19.011	19.215	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.337224950859	0	8.97490166518929						423	24	3	NaN	NaN	NaN	0.0018382	1	14788	59.645	58.143	1	116360			385	597	325	325	385	385		
AEELHYPLGER	11	Unmodified	_AEELHYPLGER_			0	0	0	Q14257	Q14257	Q14257	RCN2	Reticulocalbin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.554331	1312.64116	-2.2696	-0.00099535	0.11695	5.1289E-05	-2.1527	-0.00094406	438.55445027826	6.658	0.13302	6.658	6.6047	6.7377	0	855	25	0.749315378969369	0.0164115712895311	0.749315378969369	454.9160849171	0	9.96361207565258						224	16	3	NaN	NaN	NaN	0.018789	1	12727	34.953	29.087	1	60266			386	1744	326	326	386	386		
AEELQPGFSK	10	Unmodified	_AEELQPGFSK_			0	0	0	Q96TC7	Q96TC7	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.279846	1104.54514	1.0705	0.00059227	-8.5744	-0.0047441	-7.504	-0.0041518	553.275234333737	5.78	0.27488	5.78	5.6647	5.9396	0	648	28	0.890187667287968	0.0182828962008553	0.890187667287968	361.002999092599	0	7.41436957974878						329	32	2	NaN	NaN	NaN	0.00072527	1	6837	85.716	46.392	1	145350			387	2635	327	327	387	387		
AEEQPQVELFVK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEEQPQVELFVK_			1	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.877382	1457.74021	0.97945	0.00071487	-0.98548	-0.00071928	-0.0060316	-4.4023E-06	729.876466994087	14.976	0.23056	14.976	14.834	15.065	1.7764E-15	447	58	1.02569221487577	0.0382304341637099	1.02569221487577	414.710582106162	0	15.4574299933861						762	27	3	NaN	NaN	NaN	0.00046335	1	17195	56.202	42.207	1	205840			388	71	328	328	388	388		
AEEWGVQYVETSAK	14	Unmodified	_AEEWGVQYVETSAK_			0	0	0	P11234	P11234	P11234	RALB	Ras-related protein Ral-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.880652	1595.74675	2.469	0.0019725	0.030405	2.429E-05	2.4994	0.0019967	799.381896098288	10.738	0.097564	10.738	10.693	10.791	0	336	31	1.09998710857178	0.020031295382638	1.09998710857178	444.387875179721	0	8.09251737844983						248	12	4	NaN	NaN	NaN	7.497E-06	1	21446	95.656	70.912	1	61934			389	648	329	329	389	389		
AEEYEFLTPVEEAPK	15	Unmodified	_AEEYEFLTPVEEAPK_			0	0	0	P52565	P52565	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.42235	1750.83015	2.5933	0.0022729	1.0587	0.00092785	3.652	0.0032007	876.924620388769	13.238	0.30154	13.238	13.159	13.46	0	309	136	1.11800162319566	0.0899241307871594	1.11800162319566	451.321208820781	0	36.301080934939						2459	35	6	NaN	NaN	NaN	4.0959E-24	1	25911	236.7	194.88	1	1533700			390	1214	330	330	390	390		
AEEYTEETEEREESTTGFDK	20	Unmodified	_AEEYTEETEEREESTTGFDK_			0	0	1	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	794.003073	2378.98739	1.3702	0.001088	0.9563	0.0007593	2.3265	0.0018473	794.338040658112	6.3565	0.06208	6.3565	6.3387	6.4008	0	546	46	0.959108205975751	0.0303366841243174	0.959108205975751	579.559565104755	0	18.3315243767754						207	8	3	NaN	NaN	NaN	0.00077781	1	36250	43.177	42.702	1	42268			391	3355	331	331	391	391		
AEFEQIVLGK	10	Unmodified	_AEFEQIVLGK_			0	0	0	Q16831	Q16831	Q16831	UPP1	Uridine phosphorylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.313689	1132.61282	0.40045	0.00022718	-1.1983	-0.00067983	-0.79788	-0.00045265	567.313303526217	11.846	0.13305	11.846	11.793	11.926	0	609	73	0.916577990479294	0.0486565002828631	0.916577990479294	371.591653989864	0	19.7259257862092						485	16	3	NaN	NaN	NaN	0.052154	1	7612	22.044	0	1	111180			392	1909	332	332	392	392		
AEGAATEEEGTPK	13	Unmodified	_AEGAATEEEGTPK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.296421	1288.57829	2.739	0.0017675	-1.7269	-0.0011144	1.0121	0.00065312	645.295203582125	2.2597	0.46997	2.2597	2.2153	2.6853	0	606	61	0.918606045818476	0.0405695604489756	0.918606045818476	371.871263279184	0	16.423420859809						1021	54	4	NaN	NaN	NaN	4.6852E-11	1	12010	157.77	131.91	1	301970			393	1468	333	333	393	393		
AEGFVDALHR	10	Unmodified	_AEGFVDALHR_			0	0	0	Q96I24	Q96I24	Q96I24	FUBP3	Far upstream element-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.78563	1113.55671	0.72184	0.00040263	1.4775	0.00082414	2.1994	0.0012268	557.78617749307	7.1102	0.25724	7.1102	6.986	7.2432	0	621	49	0.908462957275599	0.0324601421719642	0.908462957275599	368.377496274827	0	13.1624364056548						530	30	3	NaN	NaN	NaN	0.0038504	1	7078	72.042	57.279	1	155960			394	2554	334	334	394	394		
AEGIPVEMVVIGDDSAFTVLK	21	Unmodified	_AEGIPVEMVVIGDDSAFTVLK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1095.57176	2189.12897	-0.14895	-0.00016318	-1.6448	-0.001802	-1.7938	-0.0019652	1096.07320334226	19.552	0.062073	19.552	19.525	19.587	0	75	46	1.27319752866042	0.0296961677825143	1.27319752866042	513.162319732013	0	11.9690417263531						252	8	4	NaN	NaN	NaN	1.5788E-05	1	34562	50.519	48.671	1	43751			395	1932	335	335	395	395		
AEGPDVAVDLPK	12	Unmodified	_AEGPDVAVDLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.819335	1209.62412	0.36467	0.00022092	2.7293	0.0016535	3.094	0.0018744	605.820900909539	9.4962	0.133	9.4962	9.4253	9.5583	0	513	13	0.981336640919867	0.00807580197927182	0.981336640919867	397.540809434424	0	3.2715183778958						80	16	2	NaN	NaN	NaN	0.006807	1	9719	40.533	30.445	1	43022			396	1584	336	336	396	396		
AEGPEVDVNLPK	12	Unmodified	_AEGPEVDVNLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.330067	1266.64558	1.8789	0.0011918	-1.1924	-0.00075637	0.68647	0.00043545	634.329377936525	9.1415	0.43454	9.1415	8.9996	9.4342	0	537	76	0.965173861991602	0.0505471707378068	0.965173861991602	390.794649316406	0	20.4663269907217						1610	50	5	NaN	NaN	NaN	0.00063853	1	11415	58.889	48.801	1	1362500			397	1584	337	337	397	397		
AEGSAVSDPQHAAR	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEGSAVSDPQHAAR_			1	0	0	Q9H2C0	Q9H2C0	Q9H2C0	GAN	Gigaxonin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.339486	1436.66442	3.3783	0.0024302	-2.6571	-0.0019114	0.72119	0.00051878	719.337811498623	3.98	0.079802	3.98	3.9268	4.0066	0	414	22	1.04781950764076	0.0140712896137907	1.04781950764076	423.715580173129	0	5.69012563615644						80	10	2	NaN	NaN	NaN	0.00010346	1	16578	79.889	71.416	1	16442			398	2864	338	338	398	398		
AEGSDVANAVLDGADCIMLSGETAK	25	Unmodified	_AEGSDVANAVLDGADCIMLSGETAK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1247.57544	2493.13632	0.6424	0.00080144	-0.26006	-0.00032444	0.38234	0.000477	1248.07679358056	18.133	0.17734	18.133	18.089	18.266	0	63	79	1.28111162701928	0.0514769093526355	1.28111162701928	515.954857256686	0	20.7318088891678						1226	21	6	NaN	NaN	NaN	2.2434E-18	1	36793	128.39	126.54	1	442920			399	699	339	339	399	399		
AEGSDVANAVLDGADCIMLSGETAK	25	Unmodified	_AEGSDVANAVLDGADCIMLSGETAK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.052716	2493.13632	1.7665	0.0014698	0.47338	0.00039388	2.2399	0.0018637	832.387811416474	18.142	0.33692	18.142	18.089	18.426	0	417	91	1.04580932352505	0.0603180724926942	1.04580932352505	631.782404348064	0	36.4386662155841						1515	39	7	NaN	NaN	NaN	3.5674E-34	1	36794	290.29	286.33	1	1286400			400	699	339	339	400	400		
AEGSDVANAVLDGADCIMLSGETAK	25	Oxidation (M)	_AEGSDVANAVLDGADCIM(Oxidation (M))LSGETAK_	AEGSDVANAVLDGADCIM(1)LSGETAK	AEGSDVANAVLDGADCIM(140)LSGETAK	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.384354	2509.13123	1.6571	0.0013876	0.9161	0.00076713	2.5732	0.0021548	837.720017644333	15.083	0.15962	15.083	15.03	15.189	0	438	55	1.03173026378327	0.0362208047125181	1.03173026378327	623.255100559453	0	21.8805264087774						696	19	5	NaN	NaN	NaN	4.605E-18	1	36876	142.02	139.92	1	159400			401	699	339	340	401	401	222	
AEGSSTASSGSQLAEGK	17	Unmodified	_AEGSSTASSGSQLAEGK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.865731	1565.71691	2.9787	0.0023349	-2.4408	-0.0019133	0.53787	0.00042162	783.863776562829	3.0843	0.11526	3.0843	3.0488	3.1641	0	441	58	1.02971785871157	0.0382621221604766	1.02971785871157	416.068194895576	0	15.460207828291						267	14	3	NaN	NaN	NaN	6.3381E-10	1	20514	126.17	111.72	1	56169			402	3129	340	341	402	402		
AEGTVFTEEDFQK	13	Unmodified	_AEGTVFTEEDFQK_			0	0	0	Q86WX3	Q86WX3	Q86WX3	RPS19BP1	Active regulator of SIRT1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.846278	1499.678	0.77314	0.00058051	-0.55258	-0.00041491	0.22056	0.00016561	750.846557145643	9.381	0.12414	9.381	9.3189	9.443	0	474	34	1.00756305028564	0.0221701170870099	1.00756305028564	407.273425789399	0	8.96152308644002						211	15	3	NaN	NaN	NaN	2.1284E-05	1	18509	99.174	91.617	1	58026			403	2181	341	342	403	403		
AEGYAEGDLTLYHR	14	Unmodified	_AEGYAEGDLTLYHR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.254722	1593.74234	0.098245	5.2292E-05	-0.39212	-0.00020871	-0.29387	-0.00015641	532.255192834875	8.0947	0.15972	8.0947	8.0502	8.21	0	708	34	0.849494101904619	0.0224141150004975	0.849494101904619	514.788184835311	0	13.5828154073418						321	19	4	NaN	NaN	NaN	0.00011093	1	21385	61.577	59.276	1	80006			404	2220	342	343	404	404		
AEGYAEGDLTLYHR	14	Unmodified	_AEGYAEGDLTLYHR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.878444	1593.74234	2.4738	0.0019738	-0.66087	-0.0005273	1.8129	0.0014465	797.878328585665	8.0947	0.17746	8.0947	8.0591	8.2366	0	354	46	1.08796502040166	0.0300780138159316	1.08796502040166	439.535786235216	0	12.151460022215						389	21	4	NaN	NaN	NaN	0.00013324	1	21387	101.64	94.896	1	102290			405	2220	342	343	405	405		
AEHASSLLELASTTK	15	Unmodified	_AEHASSLLELASTTK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.409577	1556.8046	1.8006	0.0014034	0.98746	0.00076963	2.788	0.002173	779.410924176053	9.6824	0.079804	9.6824	9.6381	9.7179	0	381	31	1.06991323971056	0.0200699816330834	1.06991323971056	432.331237558705	0	8.10989122777727						130	10	2	NaN	NaN	NaN	0.0063564	1	20270	38.584	34.976	1	36583			406	1991	343	344	406	406		
AEHDQLLLNYAK	12	Unmodified	_AEHDQLLLNYAK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.249019	1413.72523	-0.9637	-0.00045511	-1.3707	-0.00064732	-2.3344	-0.0011024	472.248236818594	8.1124	0.19524	8.1124	8.068	8.2632	0	816	31	0.775960037304758	0.0204773388322395	0.775960037304758	470.741793768214	0	12.4227263648398						351	23	3	NaN	NaN	NaN	0.0026055	1	15879	76.572	59.92	1	121130			407	784	344	345	407	407		
AEHDSILAEK	10	Unmodified	_AEHDSILAEK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	371.524261	1111.55095	0.062749	2.3313E-05	0.44812	0.00016649	0.51087	0.0001898	371.52428872623	3.306	0.15959	3.306	3.2617	3.4213	0	879	28	0.732894652678068	0.0184823364857525	0.732894652678068	445.782947006563	0	11.2418754811202						267	19	3	NaN	NaN	NaN	0.0023448	1	7027	62.969	50.902	1	67034			408	857	345	346	408	408		
AEHDSILAEK	10	Unmodified	_AEHDSILAEK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.782753	1111.55095	1.7038	0.00094865	-0.077299	-4.3039E-05	1.6265	0.00090561	556.782958527684	3.306	0.31932	3.306	3.2528	3.5721	0	654	52	0.886123392477847	0.0345439513125253	0.886123392477847	359.326840606046	0	14.0077205867117						675	37	4	NaN	NaN	NaN	2.4139E-14	1	7028	143.39	105.67	1	282690			409	857	345	346	409	409		
AEHLDHVMFR	10	Unmodified	_AEHLDHVMFR_			0	0	0	O95394	O95394	O95394	PGM3	Phosphoacetylglucosamine mutase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.873118	1253.59753	-2.0307	-0.00085062	1.6232	0.00067991	-0.40753	-0.00017071	418.873688294865	5.4697	0.12406	5.4697	5.4254	5.5494	-8.8818E-16	789	25	0.794378096728713	0.016361355368585	0.794378096728713	482.510212468412	0	9.93798933741641						208	15	4	NaN	NaN	NaN	0.0056814	1	11021	54.436	52.277	1	52012			410	431	346	347	410	410		
AEHQVGEDGFLLK	13	Unmodified	_AEHQVGEDGFLLK_			0	0	0	P42229;P51692	P42229;P51692	P42229	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.580658	1441.72014	-1.1426	-0.00055025	-0.034582	-1.6654E-05	-1.1772	-0.0005669	481.580891640338	8.068	0.097625	8.068	8.0237	8.1213	0	774	37	0.804600385996946	0.0245249645792073	0.804600385996946	488.024957986923	0	14.875452481381						170	12	3	NaN	NaN	NaN	0.023379	1	16719	57.293	47.779	1	44267			411	1046;1197	347	348	411	411		
AEIDLVCELAK	11	Unmodified	_AEIDLVCELAK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.828846	1259.64314	1.1829	0.00074621	0.12868	8.1176E-05	1.3116	0.00082739	630.828763391248	13.602	0.09754	13.602	13.558	13.655	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.727224144894	0	7.36016349933357						203	12	3	NaN	NaN	NaN	0.00077909	1	11203	57.888	48.374	1	48467			412	2083	348	349	412	412		
AEIDMLDIR	9	Unmodified	_AEIDMLDIR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.276249	1074.53795	0.3001	0.00016154	0.10427	5.6128E-05	0.40437	0.00021766	538.276238799105	12.538	0.15075	12.538	12.485	12.635	0	642	34	0.894250814548268	0.0223457630982734	0.894250814548268	362.775481230598	0	9.06512449254637						369	18	4	NaN	NaN	NaN	0.0082732	1	6066	60.892	42.489	1	130570			413	604	349	350	413	413		
AEIELFVNR	9	Unmodified	_AEIELFVNR_			0	0	0	Q99805	Q99805	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.798206	1089.58186	-0.26768	-0.0001461	-2.4546	-0.0013397	-2.7222	-0.0014858	545.797750324345	11.704	0.070929	11.704	11.678	11.749	0	636	43	0.898312834727904	0.028418378530508	0.898312834727904	364.359661897936	0	11.5266201180348						155	9	3	NaN	NaN	NaN	0.0047803	1	6454	69.905	52.509	1	53293			414	2675	350	351	414	414		
AEIGIAMGSGTAVAK	15	Unmodified	_AEIGIAMGSGTAVAK_			0	0	0	P16615;O14983;Q93084	P16615	P16615	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.366127	1374.7177	2.0461	0.0014085	-0.53791	-0.00037028	1.5082	0.0010382	688.366003538514	8.973	0.14188	8.973	8.9287	9.0706	0	366	103	1.07994477139643	0.0682945113835656	1.07994477139643	436.893946843924	0	27.6286893704405						647	17	5	NaN	NaN	NaN	0.0023185	1	14649	61.194	38.141	1	264760			415	730	351	352	415	415		
AEIIHHLADLLTDQR	15	Unmodified	_AEIIHHLADLLTDQR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.970667	1743.92678	1.875	0.0016368	-4.4901	-0.0039197	-2.6152	-0.002283	873.468523366249	13.735	0.12415	13.735	13.682	13.806	0	273	55	1.14198628764525	0.0359275516564201	1.14198628764525	461.017830031617	0	14.5038886037281						408	15	3	NaN	NaN	NaN	0.00017217	1	25726	50.314	44.926	1	93105			416	1259	352	353	416	416		
AEIIHHLADLLTDQR	15	Unmodified	_AEIIHHLADLLTDQR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.316204	1743.92678	-1.1096	-0.00064612	-1.2652	-0.00073676	-2.3748	-0.0013829	582.315319521486	13.735	0.088669	13.735	13.7	13.788	0	720	37	0.841341816837976	0.0244602575158872	0.841341816837976	509.469956667946	0	14.8117757697354						239	11	3	NaN	NaN	NaN	1.625E-06	1	25727	75.5	70.113	1	62869			417	1259	352	353	417	417		
AEIIHHLADLLTDQRDEILLANK	23	Unmodified	_AEIIHHLADLLTDQRDEILLANK_			0	0	1	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	661.113155	2640.42351	-0.42353	-0.00028	-1.4743	-0.00097467	-1.8978	-0.0012547	661.362897043859	16.599	0.11524	16.599	16.555	16.67	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	723.346157418731	0	13.0815870779918						276	14	5	NaN	NaN	NaN	1.463E-09	1	37398	66.913	66.215	1	68062			418	1259	353	354	418	418		
AEIIHHLADLLTDQRDEILLANK	23	Unmodified	_AEIIHHLADLLTDQRDEILLANK_			0	0	1	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	661.113155	2640.42351	-0.097309	-6.4333E-05	-0.27202	-0.00017984	-0.36933	-0.00024417	661.363420170675	16.599	0.097501	16.599	16.555	16.652	0	549	22	0.957085760909907	0.0141571162745744	0.957085760909907	770.671726316458	0	11.3996986316215						145	12	4	NaN	NaN	NaN	0.0094136	1	37399	24.172	24.125	1	25228			419	1259	353	354	419	419		
AEIIHHLADLLTDQRDEILLANK	23	Unmodified	_AEIIHHLADLLTDQRDEILLANK_			0	0	1	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	881.148448	2640.42351	1.4275	0.0012579	0.5251	0.00046269	1.9526	0.0017205	881.48331735851	16.599	0.13295	16.599	16.555	16.688	0	441	28	1.02971785871157	0.0181116473716121	1.02971785871157	621.869053230384	0	10.9380185146249						417	16	5	NaN	NaN	NaN	0.0073995	1	37400	17.813	17.779	1	115660			420	1259	353	354	420	420		
AEIPCEDEQEQEHNGPLDNK	20	Unmodified	_AEIPCEDEQEQEHNGPLDNK_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	784.673004	2350.99718	0.65697	0.00051551	1.8733	0.0014699	2.5302	0.0019854	785.008247320979	5.8687	0.08867	5.8687	5.8332	5.9219	0	618	31	0.910492137470517	0.0202903977808542	0.910492137470517	550.220387588746	0	12.2617099828311						213	11	4	NaN	NaN	NaN	0.038414	1	36043	20.112	19.714	1	38611			421	2621	354	355	421	421		
AEISFEDRK	9	Unmodified	_AEISFEDRK_			0	0	1	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	365.520739	1093.54039	-0.27152	-9.9245E-05	0.29008	0.00010603	0.018569	6.7875E-06	365.520938979975	4.2017	0.097534	4.2017	4.1662	4.2637	0	906	19	0.714399420407021	0.012337899338106	0.714399420407021	434.620710784211	0	7.50603433700513						111	12	3	NaN	NaN	NaN	0.037442	1	6540	34.781	28.517	1	21282			422	792	355	356	422	422		
AEITDAEGLGLK	12	Unmodified	_AEITDAEGLGLK_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.824618	1215.63468	0.67248	0.00040942	-1.483	-0.00090291	-0.81055	-0.00049348	609.32400526658	9.5228	0.1418	9.5228	9.4874	9.6292	0	576	67	0.938871150116794	0.0445215433730949	0.938871150116794	380.31678592865	0	18.0347327512749						383	17	3	NaN	NaN	NaN	0.065518	1	9904	43.168	36.938	1	93558			423	1736	356	357	423	423		
AEITFDDHK	9	Unmodified	_AEITFDDHK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.173339	1074.49819	-0.39097	-0.00014043	-0.16237	-5.832E-05	-0.55335	-0.00019875	359.173139778744	4.4056	0.079798	4.4056	4.3613	4.4411	0	906	22	0.714399420407021	0.0143932116988817	0.714399420407021	434.716366899699	0	8.75835634663764						82	10	2	NaN	NaN	NaN	0.060223	1	6057	14.763	7.116	1	16031			424	326	357	358	424	424		
AEITLVATKPEK	12	Unmodified	_AEITLVATKPEK_			0	0	1	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.37956	1298.74457	1.7415	0.0011327	0.66989	0.00043569	2.4114	0.0015684	650.380035893106	5.8687	0.18625	5.8687	5.7889	5.9751	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	411.111741063866	0	8.9692316048442						304	22	3	NaN	NaN	NaN	0.0033035	1	12331	72.922	60.326	1	89861			425	3173	358	359	425	425		
AELAELPLR	9	Unmodified	_AELAELPLR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.295299	1010.57605	0.089635	4.5382E-05	-1.1543	-0.00058439	-1.0646	-0.00053901	506.294901026024	10.711	0.16849	10.711	10.631	10.8	0	687	37	0.863749705078866	0.024426303976944	0.863749705078866	350.682499016642	0	9.91708277294606						346	20	3	NaN	NaN	NaN	0.00073814	1	4530	62.88	45.485	1	135040			426	2605	359	360	426	426		
AELDDTPMR	9	Unmodified	_AELDDTPMR_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.242406	1046.47026	0.62553	0.00032793	2.4564	0.0012877	3.0819	0.0016157	524.243789139764	5.3544	0.23939	5.3544	5.2745	5.5139	0	690	55	0.86171403876517	0.0366598233123934	0.86171403876517	349.694750725565	0	14.8770325167747						523	28	2	NaN	NaN	NaN	0.006196	1	5386	77.072	49.335	1	345190			427	814	360	361	427	427		
AELDLMAPGPLPR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AELDLMAPGPLPR_			1	0	0	O95361	O95361	O95361	TRIM16	Tripartite motif-containing protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.376494	1420.73844	0.54134	0.0003851	-0.033665	-2.3948E-05	0.50768	0.00036115	711.376148785054	18.027	0.097542	18.027	17.991	18.089	0	477	34	1.0055473068722	0.0221731807232346	1.0055473068722	406.66507001734	0	8.96731365068172						247	12	3	NaN	NaN	NaN	0.00031358	1	16117	62.271	55.524	1	64227			428	425	361	362	428	428		
AELEQHLEQEQEFQVNK	17	Unmodified	_AELEQHLEQEQEFQVNK_			0	0	0	Q16204	Q16204	Q16204	CCDC6	Coiled-coil domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.339514	2097.99671	1.2542	0.00087833	0.11377	7.9675E-05	1.3679	0.00095801	700.673872954073	8.4229	0.1419	8.4229	8.3874	8.5293	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	567.771740898563	0	9.79728590698323						319	17	5	NaN	NaN	NaN	9.7178E-05	1	33282	87.573	85.332	1	88236			429	1879	362	363	429	429		
AELFQQEQQSADK	13	Unmodified	_AELFQQEQQSADK_			0	0	0	Q9BTC0	Q9BTC0	Q9BTC0	DIDO1	Death-inducer obliterator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.362627	1520.7107	2.27	0.0017283	-2.7946	-0.0021277	-0.52459	-0.00039941	761.360391119767	5.9751	0.097609	5.9751	5.9219	6.0195	0	453	31	1.02166545906632	0.0201393435247932	1.02166545906632	412.921624105703	0	8.13962179388949						219	12	3	NaN	NaN	NaN	2.9959E-05	1	19154	112.7	95.233	1	57776			430	2732	363	364	430	430		
AELGALPDDFIDSLEK	16	Unmodified	_AELGALPDDFIDSLEK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.935625	1731.8567	2.0998	0.0018204	0.24864	0.00021555	2.3484	0.0020359	866.935921971437	18.346	0.11523	18.346	18.302	18.417	0	330	55	1.10399226369747	0.0360265591929509	1.10399226369747	445.704189706543	0	14.5446566076745						414	14	5	NaN	NaN	NaN	0.00020532	1	25375	68.108	43.419	1	157360			431	2804	364	365	431	431		
AELGEADEAELQR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AELGEADEAELQR_			1	0	0	Q9Y5J9	Q9Y5J9	Q9Y5J9	TIMM8B	Mitochondrial import inner membrane translocase subunit Tim8 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.84681	1471.67907	1.9328	0.0014242	0.44525	0.00032808	2.3781	0.0017523	736.847108374038	10.871	0.1862	10.871	10.826	11.012	0	387	34	1.06589869032374	0.0220815471089169	1.06589869032374	430.928586405057	0	8.9272742031348						412	22	4	NaN	NaN	NaN	1.3571E-07	1	17634	106	95.915	1	123490			432	3433	365	366	432	432		
AELGIPLEEVPPEEINYLTR	20	Unmodified	_AELGIPLEEVPPEEINYLTR_			0	0	0	Q13907	Q13907	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1141.59937	2281.18418	0.061076	6.9724E-05	-0.2945	-0.0003362	-0.23342	-0.00026647	1142.10065203943	18.036	0.22166	18.036	17.974	18.195	0	63	61	1.28111162701928	0.0395976097683282	1.28111162701928	516.220675342153	0	15.955756255293						686	26	3	NaN	NaN	NaN	0.0021478	1	35472	38.839	36.598	1	145720			433	1710	366	367	433	433		
AELGTDLLSQLSLEDQK	17	Unmodified	_AELGTDLLSQLSLEDQK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.48347	1858.95239	0.52482	0.00048833	3.0936	0.0028785	3.6184	0.0033669	930.485033057813	16.936	0.23059	16.936	16.821	17.051	0	234	43	1.16792504164217	0.0279090979609082	1.16792504164217	471.259072816279	0	11.2613525348366						541	27	4	NaN	NaN	NaN	3.665E-10	1	28678	144.2	136.23	1	168920			434	3321	367	368	434	434		
AELIVQPELK	10	Unmodified	_AELIVQPELK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.337164	1138.65977	1.1846	0.00067562	-0.20241	-0.00011544	0.98219	0.00056018	570.337138497141	10.161	0.15072	10.161	10.099	10.25	0	600	34	0.922661313351899	0.0222962488144068	0.922661313351899	374.034011090807	0	9.03858789314012						330	18	3	NaN	NaN	NaN	0.00079749	1	7767	78.816	71.169	1	81151			435	718	368	369	435	435		
AELLDNEK	8	Unmodified	_AELLDNEK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.24019	930.465826	1.0292	0.00047985	1.2659	0.00059022	2.2951	0.0010701	466.240652659114	4.0154	0.3547	4.0154	3.9622	4.3169	0	714	28	0.845418525735192	0.018341368585978	0.845418525735192	343.636710845335	0	7.45520399828757						551	41	3	NaN	NaN	NaN	0.010479	1	2881	67.464	36.902	1	153980			436	2950	369	370	436	436		
AELLSLTQMER	11	Unmodified	_AELLSLTQMER_			0	0	0	P14373	P14373	P14373	TRIM27	Zinc finger protein RFP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.839745	1289.66494	1.0444	0.00067454	6.666	0.0043052	7.7104	0.0049797	646.343345787378	12.644	0.23943	12.644	12.529	12.768	0	516	49	0.979317271586824	0.0323210938061441	0.979317271586824	396.444880520151	0	13.0841480529544						342	28	3	NaN	NaN	NaN	0.061143	1	12061	22.898	0.89418	1	77266			437	696	370	371	437	437		
AELMEISEDK	10	Unmodified	_AELMEISEDK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.776279	1163.538	1.9445	0.0011332	0.33538	0.00019545	2.2799	0.0013287	582.776647783687	7.7309	0.28386	7.7309	7.6777	7.9615	0	615	49	0.912521036363781	0.0324691438304571	0.912521036363781	369.828638256428	0	13.1591697831095						549	33	5	NaN	NaN	NaN	0.00040087	1	8426	88.181	67.947	1	327180			438	533	371	372	438	438		
AELNEFLTR	9	Unmodified	_AELNEFLTR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.787838	1091.56112	0.93132	0.00050924	-0.11642	-6.3658E-05	0.8149	0.00044558	546.788076513207	10.525	0.39019	10.525	10.436	10.826	0	654	76	0.886123392477847	0.0507788117430045	0.886123392477847	359.407421499521	0	20.5956438463158						1123	45	5	NaN	NaN	NaN	1.1839E-05	1	6497	146.27	100.79	1	1158500			439	819	372	373	439	439		
AELNPWPEYIYTR	13	Unmodified	_AELNPWPEYIYTR_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.40938	1650.80421	2.2933	0.0018952	0.8886	0.00073434	3.1819	0.0026296	826.410218624486	14.701	0.36357	14.701	14.524	14.888	0	324	97	1.1079963157843	0.0640913865747714	1.1079963157843	447.495059533191	0	25.8850850334646						2245	42	5	NaN	NaN	NaN	3.639E-11	1	23073	114.93	99.787	1	1040400			440	857	373	374	440	440		
AELNTHVNVK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AELNTHVNVK_			1	0	0	Q9NUQ6	Q9NUQ6	Q9NUQ6	SPATS2L	SPATS2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.811845	1165.60914	1.0189	0.00059485	-3.5686	-0.0020834	-2.5497	-0.0014886	583.809467149821	6.6668	0.133	6.6668	6.6136	6.7466	0	603	34	0.920633820089869	0.022302429094845	0.920633820089869	373.108856273284	0	9.03859235899171						197	16	3	NaN	NaN	NaN	0.0018507	1	8488	59.645	37.259	1	53420			441	3055	374	375	441	441		
AELQLPPPPPPGHYGAWAAQELQAK	25	Unmodified	_AELQLPPPPPPGHYGAWAAQELQAK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.462367	2665.36527	1.9968	0.0017761	-0.82083	-0.0007301	1.176	0.001046	889.795759639236	14.542	0.21282	14.542	14.471	14.684	0	423	34	1.04178812298108	0.0221181322684503	1.04178812298108	629.127718800576	0	13.3569674977301						443	25	5	NaN	NaN	NaN	0.0093013	1	37488	31.381	28.636	1	80304			442	1667	375	376	442	442		
AELRDDPIISTHLAK	15	Unmodified	_AELRDDPIISTHLAK_			0	0	1	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.308938	1677.90498	0.59748	0.00033478	0.53083	0.00029743	1.1283	0.0006322	560.309070514147	7.5536	0.16844	7.5536	7.5092	7.6777	0	642	37	0.894250814548268	0.0243788876669334	0.894250814548268	541.676516589448	0	14.7670773511353						353	20	3	NaN	NaN	NaN	0.00022348	1	23866	101.43	82.104	1	312750			443	63	376	377	443	443		
AELSEEALLSVLPTIR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AELSEEALLSVLPTIR_			1	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.996017	1781.97748	0.60503	0.00053969	0.29478	0.00026294	0.89981	0.00080263	892.498215041267	20.217	0.026613	20.217	20.208	20.235	0	144	31	1.22760721615852	0.0198504153728811	1.22760721615852	495.499360453221	0	8.01222735784518						58	4	3	NaN	NaN	NaN	0.00011223	1	26735	83.214	79.142	1	30657			444	1072	377	378	444	444		
AELTALESLIEMGFPR	16	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AELTALESLIEM(Oxidation (M))GFPR_	AELTALESLIEM(1)GFPR	AELTALESLIEM(63)GFPR	1	1	0	Q04323	Q04323	Q04323	UBXN1	UBX domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.966402	1833.91825	0.45636	0.00041893	0.5322	0.00048854	0.98856	0.00090746	917.96598992712	20.332	0.0088643	20.332	20.323	20.332	0	225	22	1.17390432875292	0.0139478373320099	1.17390432875292	473.719620325126	0	5.62853721844226						30	2	2	NaN	NaN	NaN	0.00016474	1	28080	62.705	59.826	1	5364.5			445	1542	378	379	445	445	542	
AELTSQESQISTYEEELAK	19	Unmodified	_AELTSQESQISTYEEELAK_			0	0	0	P42566	P42566	P42566	EPS15	Epidermal growth factor receptor substrate 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.5157	2155.01684	2.3677	0.0025536	-4.6511	-0.0050163	-2.2834	-0.0024627	1079.01231732078	12.91	0.097563	12.91	12.866	12.963	0	129	58	1.23753038177212	0.0377080442186564	1.23753038177212	498.836468723125	0	15.199746121428						246	12	3	NaN	NaN	NaN	1.9043E-07	1	34106	91.457	69.418	1	37981			446	1050	379	380	446	446		
AELTTLLEQWEK	12	Unmodified	_AELTTLLEQWEK_			0	0	0	Q9Y4B6	Q9Y4B6	Q9Y4B6	VPRBP	Protein VPRBP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.885207	1459.75586	0.033528	2.4505E-05	4.9665	0.0036299	5	0.0036544	730.889324552864	17.3	0.14189	17.3	17.229	17.371	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.519050193835	0	8.1381895016259						306	17	4	NaN	NaN	NaN	0.0057741	1	17261	51.531	17.338	1	74014			447	3408	380	381	447	447		
AELVQLVSPFLGK	13	Unmodified	_AELVQLVSPFLGK_			0	0	0	Q96ST3	Q96ST3	Q96ST3	SIN3A	Paired amphipathic helix protein Sin3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.911027	1399.8075	0.043619	3.0573E-05	-1.4678	-0.0010288	-1.4242	-0.00099821	700.909897023282	18.098	0.10639	18.098	18.045	18.151	0	510	43	0.983355730988811	0.0282574968538493	0.983355730988811	397.747648046729	0	11.429590085375						247	13	3	NaN	NaN	NaN	0.00013322	1	15455	74.524	68.147	1	70287			448	2624	381	382	448	448		
AEMDEVER	8	Unmodified	_AEMDEVER_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.713482	977.41241	0.58328	0.00028564	4.7084	0.0023058	5.2916	0.0025914	489.715144671788	3.3681	0.15083	3.3681	3.3326	3.4834	0	726	25	0.837263974740672	0.0163136366798808	0.837263974740672	340.084153693648	0	6.62635619269452						206	18	3	NaN	NaN	NaN	0.04824	1	3778	37.722	26.894	1	49944			449	270	382	383	449	449		
AEMDMVAWGVDLASVEQHINSHR	23	Unmodified	_AEMDMVAWGVDLASVEQHINSHR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	649.557424	2594.20059	-0.17289	-0.0001123	-0.25089	-0.00016297	-0.42378	-0.00027527	649.808161425845	17.681	0.062061	17.681	17.654	17.716	0	621	19	0.908462957275599	0.0121759257181062	0.908462957275599	731.587513965036	0	9.80530373307226						161	8	4	NaN	NaN	NaN	0.05195	1	37219	4.6484	4.4348	1	37501			450	718	383	384	450	450		
AENDVDNELLDYEDDEVETAAGGDGAEAPAK	31	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AENDVDNELLDYEDDEVETAAGGDGAEAPAK_			1	0	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1088.79893	3263.37496	0.8645	0.00094127	0.44218	0.00048145	1.3067	0.0014227	1089.46825449499	16.564	0.079793	16.564	16.528	16.608	0	174	67	1.20774045859593	0.0437128828362645	1.20774045859593	728.65108138712	0	26.3727517965423						411	10	5	NaN	NaN	NaN	1.2891E-06	1	38518	55.547	55.547	1	79607			451	1705	384	385	451	451		
AENFFILR	8	Unmodified	_AENFFILR_			0	0	0	P59998	P59998	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.276909	1008.53927	-0.038848	-1.9629E-05	-1.1571	-0.00058464	-1.1959	-0.00060427	505.276083970971	13.496	0.133	13.496	13.434	13.567	0	681	58	0.867820189810857	0.0386615689513493	0.867820189810857	352.344674795673	0	15.6970281392308						344	16	3	NaN	NaN	NaN	0.00067072	1	4480	101.41	69.284	1	117400			452	1301	385	386	452	452		
AENLQLLTENELHR	14	Unmodified	_AENLQLLTENELHR_			0	0	0	O94992	O94992	O94992	HEXIM1	Protein HEXIM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.628559	1678.86385	0.45099	0.00025284	-0.73694	-0.00041315	-0.28595	-0.00016031	560.628641495821	10.472	0.11531	10.472	10.418	10.534	0	672	25	0.873923798053065	0.0162729009073457	0.873923798053065	529.361320019435	0	9.85697417103052						272	14	4	NaN	NaN	NaN	0.0018555	1	23890	48.822	38.572	1	97834			453	401	386	387	453	453		
AENNSEVGASGYGVPGPTWDR	21	Unmodified	_AENNSEVGASGYGVPGPTWDR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.99051	2161.96647	2.2413	0.0024251	0.53298	0.00057668	2.7743	0.0030018	1082.49158651836	10.534	0.12419	10.534	10.48	10.605	0	165	85	1.21370334790578	0.0557110028588506	1.21370334790578	489.22193499059	0	22.4561007151385						693	15	4	NaN	NaN	NaN	3.0712E-22	1	34199	170.92	159.71	1	147300			454	1575	387	388	454	454		
AENQVLAMR	9	Unmodified	_AENQVLAMR_			0	0	0	P51572	P51572	P51572	BCAP31	B-cell receptor-associated protein 31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.268758	1030.52296	0.76769	0.00039633	0.13392	6.9139E-05	0.90161	0.00046547	516.269528502377	5.8953	0.29267	5.8953	5.7889	6.0815	-8.8818E-16	681	52	0.867820189810857	0.034596730190302	0.867820189810857	352.243481330405	0	14.0426240688601						711	34	5	NaN	NaN	NaN	1.5916E-05	1	5008	129.72	103.5	1	421230			455	1191	388	389	455	455		
AENYDIPSADR	11	Unmodified	_AENYDIPSADR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.786024	1249.55749	2.1819	0.0013654	2.3783	0.0014883	4.5602	0.0028537	625.787847976756	5.7889	0.19508	5.7889	5.7091	5.9041	0	570	70	0.942920803299286	0.0465871696119698	0.942920803299286	381.840771594587	0	18.8657209903515						946	23	4	NaN	NaN	NaN	4.4302E-05	1	10898	129.28	110.02	1	777620			456	804	389	390	456	456		
AEPASVAAESLAGSR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEPASVAAESLAGSR_			1	0	0	Q9NQT5	Q9NQT5	Q9NQT5	EXOSC3	Exosome complex component RRP40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.36517	1456.71579	1.5328	0.0011179	2.0211	0.0014741	3.5538	0.002592	729.366618131343	12.414	0.13298	12.414	12.361	12.493	0	360	40	1.08395544855938	0.0260676102408008	1.08395544855938	438.270611669322	0	10.5397943247364						347	16	4	NaN	NaN	NaN	1.3549E-06	1	17148	106.11	94.155	1	96731			457	3003	390	391	457	457		
AEPEDHYFLLTEPPLNTPENR	21	Unmodified	_AEPEDHYFLLTEPPLNTPENR_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.067683	2481.18122	1.8352	0.0015197	-1.1551	-0.00095646	0.68013	0.00056319	828.401028707751	13.939	0.27489	13.939	13.824	14.099	0	558	70	0.951016745717027	0.0465291454574099	0.951016745717027	574.532740210833	0	28.109407704655						1827	32	5	NaN	NaN	NaN	9.2342E-08	1	36732	83.061	82.364	1	422600			458	1330	392	392	458	458		
AEPHFLSILQHLLLVR	16	Unmodified	_AEPHFLSILQHLLLVR_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.371872	1885.09379	-0.45858	-0.00028862	0.21484	0.00013521	-0.24374	-0.0001534	629.372568905444	19.951	0.017714	19.951	19.942	19.96	0	609	22	0.916577990479294	0.0141983560762999	0.916577990479294	554.701242414009	0	8.59266296765611						44	3	3	NaN	NaN	NaN	0.018924	1	29274	18.098	17.962	1	7441.5			459	270	393	393	459	459		
AEPMQWASLELPAAK	15	Unmodified	_AEPMQWASLELPAAK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.418891	1640.82323	1.9412	0.0015945	0.11719	9.6259E-05	2.0584	0.0016908	821.419821440286	15.118	0.17736	15.118	15.056	15.234	0	354	52	1.08796502040166	0.034074328312536	1.08796502040166	439.427113421474	0	13.7625598722149						781	21	5	NaN	NaN	NaN	1.7594E-05	1	22776	63.766	54.504	1	227600			460	3213	394	394	460	460		
AEPPQCTSLAWSADGQTLFAGYTDNLVR	28	Unmodified	_AEPPQCTSLAWSADGQTLFAGYTDNLVR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1023.48546	3067.43455	1.3726	0.0014048	0.14817	0.00015165	1.5208	0.0015565	1023.82000384245	18.275	0.19506	18.275	18.231	18.426	0	369	85	1.07793901817685	0.0561572719375942	1.07793901817685	650.516013132587	0	33.8898620731187						1011	23	6	NaN	NaN	NaN	3.4372E-07	1	38314	67.199	66.922	1	240880			461	1435	395	395	461	461		
AEPSEVDMNSPK	12	Unmodified	_AEPSEVDMNSPK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.295367	1302.57618	2.6197	0.0017088	0.12096	7.8902E-05	2.7406	0.0017877	652.295333578259	4.4233	0.32806	4.4233	4.3169	4.645	0	570	91	0.942920803299286	0.0607028208299977	0.942920803299286	381.670878400458	0	24.5709913987517						1152	38	3	NaN	NaN	NaN	0.0062629	1	12418	30.349	14.061	1	251030			462	3011	396	396	462	462		
AEPYCSVLPGFTFIQHLPLSER	22	Unmodified	_AEPYCSVLPGFTFIQHLPLSER_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.43342	2560.27843	0.46479	0.00039713	0.076335	6.5223E-05	0.54112	0.00046235	854.76781047146	19.038	0.12409	19.038	18.984	19.109	0	504	34	0.987393073566096	0.0222038520438094	0.987393073566096	596.405940801478	0	13.4115881730645						451	15	5	NaN	NaN	NaN	0.00047717	1	37069	43.904	38.068	1	152470			463	2746	397	397	463	463		
AEQEEEFISNTLFK	14	Unmodified	_AEQEEEFISNTLFK_			0	0	0	Q16204	Q16204	Q16204	CCDC6	Coiled-coil domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.906867	1683.79918	1.4018	0.0011816	2.5957	0.002188	3.9975	0.0033696	842.9084253865	14.737	0.15966	14.737	14.693	14.852	0	360	49	1.08395544855938	0.0320721644177464	1.08395544855938	437.714074181279	0	12.9511206145614						503	19	4	NaN	NaN	NaN	1.0209E-11	1	24009	163.93	136.56	1	144130			464	1879	398	398	464	464		
AEQEEYVQEGIR	12	Unmodified	_AEQEEYVQEGIR_			0	0	0	Q12965;O00160	Q12965	Q12965	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.84407	1449.67359	2.2891	0.0016615	0.69097	0.00050154	2.9801	0.0021631	725.84475060691	6.0638	0.18627	6.0638	5.9573	6.1436	0	480	34	1.00353128488872	0.0221793099010968	1.00353128488872	405.771635938671	0	8.96806606637762						354	22	3	NaN	NaN	NaN	0.00059031	1	16967	90.306	69.218	1	106650			465	1611	399	399	465	465		
AEQINQAAGEASAVLAK	17	Unmodified	_AEQINQAAGEASAVLAK_			0	0	0	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.939033	1669.86351	3.117	0.0026056	-1.1952	-0.00099913	1.9218	0.0016065	835.937885004906	10.152	0.13302	10.152	10.108	10.241	0	333	40	1.10198982404297	0.0260353063115875	1.10198982404297	445.026896198382	0	10.5140821690274						405	16	4	NaN	NaN	NaN	2.2168E-08	1	23621	95.677	88.101	1	145500			466	3256	401	400	466	466		
AEQLGAEGNVDESQK	15	Unmodified	_AEQLGAEGNVDESQK_			0	0	0	Q9NQ29	Q9NQ29	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.868273	1573.72199	3.1423	0.0024757	-2.4554	-0.0019345	0.6869	0.00054119	787.866374882834	4.0243	0.10645	4.0243	3.9977	4.1041	0	444	40	1.02770517576159	0.0261648835876145	1.02770517576159	415.236432088687	0	10.5717215045507						251	13	3	NaN	NaN	NaN	6.9873E-08	1	20775	128.41	123.88	1	58473			467	2995	402	401	467	467		
AEQMFGEMEVWNAISER	17	Unmodified	_AEQMFGEMEVWNAISER_			0	0	0	O75400	O75400	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.9535	2025.89245	1.3237	0.0013422	2.7181	0.002756	4.0418	0.0040982	1013.95683927438	17.787	0.079793	17.787	17.761	17.841	0	195	22	1.19381749893585	0.0139306072345817	1.19381749893585	481.412582794119	0	5.61758360441888						106	10	3	NaN	NaN	NaN	0.028788	1	32070	33.456	32.837	1	18183			468	332	403	402	468	468		
AEQPDGLILGMGGQTALNCGVELFK	25	Oxidation (M)	_AEQPDGLILGM(Oxidation (M))GGQTALNCGVELFK_	AEQPDGLILGM(1)GGQTALNCGVELFK	AEQPDGLILGM(59)GGQTALNCGVELFK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.768251	2633.28292	2.0777	0.0018258	0.23165	0.00020357	2.3093	0.0020294	879.102761288635	17.77	0.062069	17.77	17.743	17.805	0	351	37	1.08996939197032	0.0240574350512286	1.08996939197032	658.26561608523	0	14.5290156054755						246	8	4	NaN	NaN	NaN	1.9924E-09	1	37374	59.357	55.783	1	41423			469	922	404	403	469	469	311	
AESAPLPVSADDTPEVLNR	19	Unmodified	_AESAPLPVSADDTPEVLNR_			0	0	0	O95674	O95674	O95674	CDS2	Phosphatidate cytidylyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.997276	1979.98	0.92568	0.00091735	-0.89284	-0.0008848	0.032843	3.2548E-05	991.499024818324	12.006	0.11526	12.006	11.944	12.059	0	222	40	1.17589687683038	0.02591024903842	1.17589687683038	474.260847806595	0	10.4500802051315						150	14	2	NaN	NaN	NaN	0.00072998	1	31285	50.314	44.926	1	34450			470	446	405	404	470	470		
AESDWDTVTVLR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AESDWDTVTVLR_			1	0	0	O60869	O60869	O60869	EDF1	Endothelial differentiation-related factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.348988	1432.68342	1.0155	0.00072843	1.868	0.00134	2.8835	0.0020685	717.853057950163	15.89	0.19507	15.89	15.837	16.032	0	426	76	1.03977710643793	0.0503240595692491	1.03977710643793	420.474530294377	0	20.3505012553855						453	23	2	NaN	NaN	NaN	2.3894E-05	1	16469	111.61	92.283	1	201540			471	289	406	405	471	471		
AESEEGPDVLR	11	Unmodified	_AESEEGPDVLR_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.288399	1200.56225	0.97976	0.00058912	1.1904	0.00071575	2.1701	0.0013049	601.289304812798	5.5937	0.14191	5.5937	5.5405	5.6825	0	633	46	0.900343422309015	0.0304461528019007	0.900343422309015	364.761404954478	0	12.3348282403161						237	17	3	NaN	NaN	NaN	0.00019247	1	9469	63.397	59.195	1	51302			472	1851	407	406	472	472		
AESEEMETSQAGSK	14	Unmodified	_AESEEMETSQAGSK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.314485	1482.61442	2.4907	0.0018489	-1.7338	-0.001287	0.75692	0.00056187	742.31325074925	2.4724	0.22173	2.4724	2.4459	2.6676	0	528	49	0.971237000454584	0.0323255652803331	0.971237000454584	392.631161941794	0	13.0678961473894						529	26	3	NaN	NaN	NaN	7.4143E-08	1	17977	138.71	137.21	1	141950			473	955	408	407	473	473		
AESEQEAYLRED	12	Unmodified	_AESEQEAYLRED_			0	0	1	Q9NR28	Q9NR28	Q9NR28	DIABLO	Diablo homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.317885	1438.62122	1.6442	0.0011843	1.3353	0.00096183	2.9795	0.0021462	720.318627674237	5.4785	0.15957	5.4785	5.4164	5.576	0	504	34	0.987393073566096	0.0222038520438094	0.987393073566096	399.275240706582	0	8.97864144153516						341	19	4	NaN	NaN	NaN	0.0022123	1	16624	108.24	103.09	1	86923			474	3010	409	408	474	474		
AESFAQEMFIEQNK	14	Unmodified	_AESFAQEMFIEQNK_			0	0	0	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.387787	1670.76102	1.9464	0.001628	3.9178	0.0032768	5.8643	0.0049048	836.392053179852	12.547	0.11525	12.547	12.502	12.618	0	354	40	1.08796502040166	0.0260604263960942	1.08796502040166	439.361167168269	0	10.5241796781882						243	14	3	NaN	NaN	NaN	0.00016413	1	23636	70.195	66.69	1	44209			475	5	410	409	475	475		
AESGWFHVEEDR	12	Unmodified	_AESGWFHVEEDR_			0	0	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.884629	1460.63206	-1.2434	-0.00060662	1.4626	0.00071359	0.21925	0.00010697	488.219332894423	8.485	0.12415	8.485	8.4495	8.5736	0	774	37	0.804600385996946	0.024531790781615	0.804600385996946	487.964976020968	0	14.8777640538537						211	15	3	NaN	NaN	NaN	0.049493	1	17276	6.7469	3.6444	1	47623			476	224	411	410	476	476		
AESLIGVYPEQGDCVISK	18	Unmodified	_AESLIGVYPEQGDCVISK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.985323	1963.95609	1.753	0.0017232	-1.0803	-0.0010619	0.67273	0.00066129	983.485316046972	12.396	0.12411	12.396	12.352	12.476	0	195	85	1.19381749893585	0.0557799020744194	1.19381749893585	481.515911695819	0	22.4983386703656						770	15	5	NaN	NaN	NaN	0.00010737	1	31001	74.733	69.345	1	242760			477	1764	412	411	477	477		
AESQLLECK	9	Unmodified	_AESQLLECK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.265881	1076.51721	1.3268	0.00071552	-3.257	-0.0017564	-1.9302	-0.0010409	539.267264976777	4.8223	0.14189	4.8223	4.7425	4.8844	0	663	34	0.880024865079826	0.0223705821148275	0.880024865079826	356.996071936938	0	9.07498214975067						315	17	4	NaN	NaN	NaN	0.0022421	1	6119	79.059	45.663	1	92316			478	667	413	412	478	478		
AESQNTFEETELELK	15	Unmodified	_AESQNTFEETELELK_			0	0	0	Q5JSH3	Q5JSH3	Q5JSH3	WDR44	WD repeat-containing protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.417796	1766.82104	2.719	0.0024047	-0.22151	-0.00019591	2.4975	0.0022088	884.417431100291	10.977	0.13302	10.977	10.933	11.066	0	282	37	1.13599383354359	0.0239747667739112	1.13599383354359	458.551802337546	0	9.67758115420912						289	16	4	NaN	NaN	NaN	1.8042E-12	1	26311	149.58	131.49	1	58255			479	1967	414	413	479	479		
AESSESFTMASSPAQR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AESSESFTMASSPAQR_			1	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.380691	1726.74683	2.9276	0.0025306	-0.076599	-6.6211E-05	2.851	0.0024643	864.379992085854	9.7622	0.11526	9.7622	9.709	9.8243	0	264	34	1.14797626962532	0.0219602499318536	1.14797626962532	463.47232137132	0	8.86600906579065						236	14	3	NaN	NaN	NaN	9.6521E-05	1	25223	71.219	66.068	1	50530			480	1144	415	414	480	480		
AESSFSEEEEEK	12	Unmodified	_AESSFSEEEEEK_			0	0	0	Q9Y6G5	Q9Y6G5	Q9Y6G5	COMMD10	COMM domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.788626	1399.5627	2.0219	0.0014169	-0.057964	-4.0621E-05	1.9639	0.0013763	700.788773787765	3.6076	0.079806	3.6076	3.581	3.6608	0	498	22	0.991429299781895	0.0141258159516562	0.991429299781895	401.013925104316	0	5.71361861236193						118	10	3	NaN	NaN	NaN	0.0033718	1	15429	56.202	52.594	1	21172			481	3464	416	415	481	481		
AETEEGPDVLR	11	Unmodified	_AETEEGPDVLR_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.296224	1214.5779	0.49445	0.00030077	0.44203	0.00026888	0.93647	0.00056965	608.297056318772	5.8687	0.14188	5.8687	5.8066	5.9485	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	366.358344809814	0	9.86725178726908						327	17	3	NaN	NaN	NaN	0.00013899	1	9853	107.08	79.374	1	88609			482	1850	417	416	482	482		
AETLEFNDVYQEVK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AETLEFNDVYQEVK_			1	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.91215	1725.80975	1.5991	0.0013814	1.0804	0.00093338	2.6795	0.0023148	863.913081000313	16.395	0.17733	16.395	16.342	16.519	0	246	88	1.1599488233373	0.057903216089374	1.1599488233373	468.308019727803	0	23.3773593430342						1178	21	5	NaN	NaN	NaN	4.9041E-08	1	25210	162.23	141.08	1	488840			483	1579	418	417	483	483		
AETLMTVTDPVHDIAFAPNLGR	22	Unmodified	_AETLMTVTDPVHDIAFAPNLGR_			0	0	0	Q96EE3	Q96EE3	Q96EE3	SEH1L	Nucleoporin SEH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.07037	2367.18928	0.53709	0.00042434	-1.2375	-0.00097772	-0.70042	-0.00055338	790.403866339665	16.209	0.10638	16.209	16.165	16.271	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	580.798306132877	0	12.2188311323761						308	13	4	NaN	NaN	NaN	2.7221E-17	1	36198	127.07	105.03	1	71559			484	2510	419	418	484	484		
AETLSGLGDSGAAGAAALSSASSETGTR	28	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AETLSGLGDSGAAGAAALSSASSETGTR_			1	0	0	Q15424	Q15424	Q15424	SAFB	Scaffold attachment factor B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	846.403571	2536.18888	1.4078	0.0011915	0.85847	0.00072661	2.2662	0.0019181	846.738759827546	15.278	0.079775	15.278	15.242	15.322	0	255	34	1.15396378101328	0.0219511929599736	1.15396378101328	697.05384951628	0	13.2596566772561						332	10	5	NaN	NaN	NaN	1.9632E-06	1	36977	83.077	82.772	1	104720			485	1846	420	419	485	485		
AETPTAAEDDNEGDK	15	Unmodified	_AETPTAAEDDNEGDK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.826271	1561.63799	3.0985	0.0024225	-2.1118	-0.001651	0.9867	0.00077143	781.824614354607	2.6853	0.14191	2.6853	2.6409	2.7828	0	474	34	1.00756305028564	0.0221731807232346	1.00756305028564	407.125634912789	0	8.95950906240932						233	17	3	NaN	NaN	NaN	4.6889E-05	1	20374	65.408	62.119	1	40584			486	288	421	420	486	486		
AETPTESVSEPEVATK	16	Unmodified	_AETPTESVSEPEVATK_			0	0	0	P18858	P18858	P18858	LIG1	DNA ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.907064	1673.79958	2.8514	0.0023892	-2.6203	-0.0021955	0.23117	0.0001937	837.905505405175	6.1259	0.10639	6.1259	6.0815	6.1879	0	396	55	1.05987478976334	0.0361409246465043	1.05987478976334	428.01090794853	0	14.5948466002326						349	13	3	NaN	NaN	NaN	1.935E-08	1	23732	123.92	109.47	1	74685			487	759	422	421	487	487		
AEVDMDTDAPQVSHK	15	Unmodified	_AEVDMDTDAPQVSHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.25076	1641.73045	0.37184	0.00020386	0.7343	0.00040258	1.1061	0.00060644	548.251233159424	5.1149	0.17732	5.1149	5.0351	5.2125	0	744	34	0.82502364452135	0.0224515301209383	0.82502364452135	499.833467554473	0	13.6020661065573						263	21	4	NaN	NaN	NaN	9.2694E-05	1	22793	80.623	76.64	1	90471			488	1737	423	422	488	488		
AEVDMDTDAPQVSHK	15	Unmodified	_AEVDMDTDAPQVSHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.872501	1641.73045	3.294	0.0027073	-2.0785	-0.0017083	1.2155	0.000999	821.870967735164	5.1149	0.070938	5.1149	5.0795	5.1504	0	375	55	1.07392668217569	0.0361010836697162	1.07392668217569	433.755054965621	0	14.5810955173889						318	9	3	NaN	NaN	NaN	3.4508E-08	1	22794	121.69	114.13	1	71211			489	1737	423	422	489	489		
AEVEQVELPDGK	12	Unmodified	_AEVEQVELPDGK_			0	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.332807	1312.65106	1.7233	0.0011328	-0.67775	-0.0004455	1.0456	0.00068731	657.332025904785	7.8285	0.19512	7.8285	7.7309	7.9261	0	537	67	0.965173861991602	0.0444968965895804	0.965173861991602	390.646896141178	0	18.0097858273599						549	23	3	NaN	NaN	NaN	0.0060498	1	12729	62.271	53.294	1	131720			490	3078	424	423	490	490		
AEVEVADELLENLAK	15	Unmodified	_AEVEVADELLENLAK_			0	0	0	Q7L5D6	Q7L5D6	Q7L5D6	GET4	Golgi to ER traffic protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.930342	1641.84613	0.79548	0.00065383	1.904	0.001565	2.6995	0.0022188	821.930975648382	17.92	0.088656	17.92	17.885	17.974	0	243	34	1.16194328902838	0.0219391257106372	1.16194328902838	469.304347854463	0	8.86112702861539						242	11	4	NaN	NaN	NaN	0.00012237	1	22813	72.846	56.559	1	73430			491	2118	425	424	491	491		
AEVIMNYHVGETVLSLQK	18	Unmodified	_AEVIMNYHVGETVLSLQK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.69083	2030.05066	0.63816	0.00043247	-0.65209	-0.00044191	-0.01393	-9.4404E-06	678.02470150787	13.38	0.15081	13.38	13.345	13.496	0	549	28	0.957085760909907	0.0182045269808345	0.957085760909907	578.914067963932	0	11.011402739724						319	18	4	NaN	NaN	NaN	3.7834E-07	1	32160	113.34	105.76	1	89558			492	1841	426	425	492	492		
AEVIMNYHVGETVLSLQK	18	Unmodified	_AEVIMNYHVGETVLSLQK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.03261	2030.05066	0.90768	0.00092224	-0.24142	-0.00024529	0.66626	0.00067694	1016.53352779848	13.38	0.10643	13.38	13.345	13.451	1.7764E-15	120	34	1.2434810169581	0.0218160080243679	1.2434810169581	501.432651986699	0	8.797286496727						278	13	4	NaN	NaN	NaN	1.4742E-08	1	32161	95.677	93.287	1	60355			493	1841	426	425	493	493		
AEVLISTVGPEDCVVPFLTRPK	22	Unmodified	_AEVLISTVGPEDCVVPFLTRPK_			0	0	1	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.769921	2426.28793	1.7806	0.0014419	2.4448	0.0019797	4.2254	0.0034216	810.439954751276	16.315	0.17734	16.315	16.253	16.431	0	336	43	1.09998710857178	0.0280399540961984	1.09998710857178	664.613122511746	0	16.9417635004442						540	21	4	NaN	NaN	NaN	0.021967	1	36474	37.769	31.664	1	117890			494	1284	427	426	494	494		
AEVLSEEPILK	11	Unmodified	_AEVLSEEPILK_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.345186	1226.67582	1.6414	0.0010084	0.54302	0.0003336	2.1844	0.001342	614.34549800558	10.117	0.10641	10.117	10.064	10.17	0	525	52	0.973257487423603	0.034362550528363	0.973257487423603	394.206114897	0	13.9181333992061						430	13	4	NaN	NaN	NaN	3.5322E-05	1	10204	78.816	46.676	1	150430			495	2112	428	427	495	495		
AEVLWLMGAK	10	Unmodified	_AEVLWLMGAK_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.307352	1116.60015	-1.0797	-0.00060389	-0.71183	-0.00039813	-1.7915	-0.001002	559.306949390128	14.817	0.15962	14.817	14.764	14.923	0	654	40	0.886123392477847	0.026423290319909	0.886123392477847	359.306942452642	0	10.7141643420979						270	19	3	NaN	NaN	NaN	0.060883	1	7185	39.324	20.921	1	67668			496	396	429	428	496	496		
AEVQVLVLDGR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEVQVLVLDGR_			1	0	0	P40429	P40429	P40429	RPL13A	60S ribosomal protein L13a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.848427	1239.6823	0.32357	0.00020089	-0.29887	-0.00018555	0.024708	1.534E-05	620.848507303266	16.803	0.31925	16.803	16.741	17.06	0	528	46	0.971237000454584	0.0303157001501234	0.971237000454584	393.34181521389	0	12.277572333991						904	37	5	NaN	NaN	NaN	5.2271E-23	1	10618	183.13	157.87	1	607770			497	1018	430	429	497	497		
AEVVETTQVYTEEETR	16	Unmodified	_AEVVETTQVYTEEETR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.447085	1882.87962	2.5502	0.0024034	-1.3388	-0.0012618	1.2114	0.0011416	942.445677686685	7.8818	0.15073	7.8818	7.8463	7.997	0	282	31	1.13599383354359	0.0199817200584811	1.13599383354359	458.331661870976	0	8.06188791789145						318	18	4	NaN	NaN	NaN	9.9324E-18	1	29205	128.68	123.29	1	54981			498	1816	431	430	498	498		
AEVVETTQVYTEEETRR	17	Unmodified	_AEVVETTQVYTEEETRR_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.667519	2038.98073	1.4235	0.00096891	0.98948	0.0006735	2.413	0.0016424	681.002599908342	6.8441	0.13299	6.8441	6.8087	6.9417	0	585	34	0.932794566565362	0.0222838959578864	0.932794566565362	564.204237774127	0	13.478496749666						267	16	5	NaN	NaN	NaN	0.0016355	1	32328	47.915	35.745	1	68664			499	1816	432	431	499	499		
AEVVLGNIIK	10	Unmodified	_AEVVLGNIIK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.326599	1054.63865	-0.65549	-0.00034631	-2.9847	-0.0015769	-3.6401	-0.0019232	528.826144345713	11.855	0.12416	11.855	11.766	11.89	0	672	28	0.873923798053065	0.0183082845696197	0.873923798053065	354.613980994269	0	7.42899288344421						189	15	3	NaN	NaN	NaN	0.04005	1	5589	25.254	19.506	1	47863			500	1651	433	432	500	500		
AEVWDLDMLR	10	Unmodified	_AEVWDLDMLR_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.308081	1246.60161	0.16721	0.00010439	0.32128	0.00020058	0.48849	0.00030497	624.307986578823	15.952	0.12414	15.952	15.908	16.032	0	573	28	0.940896116921038	0.0182221791516658	0.940896116921038	381.030746142179	0	7.37935930824801						230	15	3	NaN	NaN	NaN	0.0043715	1	10814	63.397	42.122	1	54091			501	2063	434	433	501	501		
AEWQVYK	7	Unmodified	_AEWQVYK_			0	0	0	Q00059	Q00059	Q00059	TFAM	Transcription factor A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.23471	922.454868	-1.0342	-0.00047805	3.7198	0.0017194	2.6856	0.0012414	462.236611596093	6.7111	0.22167	6.7111	6.6313	6.853	0	768	43	0.808687310729125	0.0286044998957902	0.808687310729125	328.748121179268	0	11.6283209508197						322	26	3	NaN	NaN	NaN	0.063388	1	2744	37.608	12.789	1	100750			502	1495	435	434	502	502		
AEYEGDGIPTVFVAVAGR	18	Unmodified	_AEYEGDGIPTVFVAVAGR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.647619	1849.92103	-0.81717	-0.00050472	0.13484	8.3284E-05	-0.68233	-0.00042144	617.646650277564	15.97	0.062072	15.97	15.943	16.005	0	624	16	0.906433495720521	0.0101487151615018	0.906433495720521	548.638036256996	0	6.14272440617606						87	8	3	NaN	NaN	NaN	0.052136	1	28489	11.209	11.209	1	14445			503	802	436	435	503	503		
AEYEGDGIPTVFVAVAGR	18	Unmodified	_AEYEGDGIPTVFVAVAGR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.96779	1849.92103	1.7508	0.0016212	-0.26783	-0.000248	1.483	0.0013732	926.468996723211	15.987	0.2483	15.987	15.908	16.156	1.7764E-15	306	124	1.12000185836644	0.0819533908135968	1.12000185836644	451.938367007736	0	33.0694822855604						1559	29	5	NaN	NaN	NaN	6.5023E-15	1	28491	126.32	118.36	1	632510			504	802	436	435	504	504		
AEYEGDGIPTVFVAVAGR	18	Unmodified	_AEYEGDGIPTVFVAVAGR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.647619	1849.92103	0.26444	0.00016333	1.4778	0.00091274	1.7422	0.0010761	618.319049359325	15.97	0.1064	15.97	15.925	16.032	0	567	64	0.944945209309785	0.0425478933681714	0.944945209309785	571.948059366041	0	25.7530117114558						343	13	4	NaN	NaN	NaN	0.049305	1	28492	23.931	23.722	1	82710			505	802	436	435	505	505		
AEYLASIFGTEK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AEYLASIFGTEK_			1	0	0	Q01081;Q8WU68	Q01081	Q01081	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.84555	1369.67655	0.78121	0.00053579	0.047474	3.256E-05	0.82868	0.00056835	685.845885078117	20.137	0.062073	20.137	20.128	20.19	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.442092761238	0	8.1533423871756						179	8	4	NaN	NaN	NaN	1.2957E-11	1	14474	156.57	136.39	1	163940			506	1510	437	436	506	506		
AFAAQEDLEK	10	Unmodified	_AFAAQEDLEK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.277303	1120.54005	1.6172	0.00090772	5.036	0.0028266	6.6533	0.0037343	561.280637510434	5.9396	0.20402	5.9396	5.8864	6.0904	0	612	49	0.914549654013882	0.0324601421719642	0.914549654013882	370.817349943836	0	13.1614328934241						522	24	4	NaN	NaN	NaN	0.00087177	1	7277	88.921	63.667	1	272460			507	962	438	437	507	507		
AFADAMEVIPSTLAENAGLNPISTVTELR	29	Unmodified	_AFADAMEVIPSTLAENAGLNPISTVTELR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1010.85326	3029.53795	1.7829	0.0018022	-1.2185	-0.0012318	0.56432	0.00057045	1011.18629149331	20.049	0.09754	20.049	20.013	20.111	0	348	199	1.09197348738011	0.131952622537258	1.09197348738011	659.02278233298	0	79.6354357002506						703	12	7	NaN	NaN	NaN	1.6081E-45	1	38270	226.65	217.83	1	263380			508	1175	439	438	508	508		
AFAHITGGGLLENIPR	16	Unmodified	_AFAHITGGGLLENIPR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.973889	1664.89984	1.4305	0.00079532	-1.6185	-0.00089986	-0.18803	-0.00010454	556.307028525738	12.866	0.19509	12.866	12.813	13.008	0	612	166	0.914549654013882	0.111899890958182	0.914549654013882	554.007588742971	0	67.7857003151879						1020	23	5	NaN	NaN	NaN	1.9541E-06	1	23481	150.21	118.15	1	417900			509	801	440	439	509	509		
AFAHITGGGLLENIPR	16	Unmodified	_AFAHITGGGLLENIPR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.457196	1664.89984	3.4635	0.0028867	-0.84088	-0.00070084	2.6226	0.0021858	833.958037984085	12.866	0.15961	12.866	12.795	12.955	0	288	91	1.13199748998575	0.0599699662485318	1.13199748998575	457.156388722444	0	24.2188286144793						784	19	4	NaN	NaN	NaN	0.0019644	1	23482	82.437	72.186	1	248470			510	801	440	439	510	510		
AFAIDSSHPWLHECMIR	17	Unmodified	_AFAIDSSHPWLHECMIR_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	518.24756	2068.96114	-1.1936	-0.00061859	1.8011	0.00093341	0.60747	0.00031482	518.499269859689	11.953	0.035482	11.953	11.926	11.961	0	663	22	0.880024865079826	0.0142338480698521	0.880024865079826	709.64325887053	0	11.4780328731297						71	5	3	NaN	NaN	NaN	0.071166	1	32860	6.8556	6.1168	1	11505			511	2785	441	440	511	511		
AFAISGPFNVQFLVK	15	Unmodified	_AFAISGPFNVQFLVK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.456133	1636.89771	1.6906	0.0013854	-1.1727	-0.00096097	0.51795	0.00042444	819.454953496382	18.94	0.20391	18.94	18.851	19.055	0	333	79	1.10198982404297	0.0520957549554606	1.10198982404297	445.100648032789	0	21.0418043656352						1376	24	5	NaN	NaN	NaN	6.4457E-12	1	22697	132.44	122.19	1	670450			512	922	442	441	512	512		
AFAMIIDK	8	Unmodified	_AFAMIIDK_			0	0	0	Q15365;Q15366	Q15365;Q15366	Q15365	PCBP1;PCBP2	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.749139	907.483725	-1.6686	-0.00075881	-1.134	-0.00051567	-2.8026	-0.0012745	454.748627159246	10.356	0.13299	10.356	10.303	10.436	0	795	52	0.790287188799094	0.0347654701228088	0.790287188799094	321.345872297106	0	14.1363044735793						318	16	3	NaN	NaN	NaN	0.01521	1	2463	72.492	49.183	1	94894			513	1833;1834	443	442	513	513		
AFAMTNQILVEK	12	Unmodified	_AFAMTNQILVEK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.865763	1363.71697	1.2059	0.0008235	1.0492	0.00071648	2.2552	0.00154	682.866934215102	11.722	0.25716	11.722	11.66	11.917	0	465	61	1.01360860968299	0.0403009640013746	1.01360860968299	410.090437723115	0	16.3051495519125						815	30	5	NaN	NaN	NaN	2.285E-07	1	14307	148.9	112.69	1	616660			514	922	444	443	514	514		
AFAMTNQILVEK	12	Oxidation (M)	_AFAM(Oxidation (M))TNQILVEK_	AFAM(1)TNQILVEK	AFAM(110)TNQILVEK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.86322	1379.71189	1.6411	0.0011338	1.054	0.00072816	2.6951	0.0018619	690.864401426152	8.831	0.2308	8.831	8.7511	8.9819	0	468	52	1.01159370163332	0.0342345274153426	1.01159370163332	409.227620954891	0	13.8491512808704						590	27	4	NaN	NaN	NaN	0.00044523	1	14812	108.4	91.005	1	194790			515	922	444	444	515	515	312	
AFANPEDALR	10	Unmodified	_AFANPEDALR_			0	0	0	O14684	O14684	O14684	PTGES	Prostaglandin E synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.277638	1102.54072	0.64493	0.00035618	1.0697	0.00059079	1.7147	0.00094697	552.278041499264	8.7955	0.41708	8.7955	8.618	9.0351	0	651	70	0.888155670855968	0.0467100220368035	0.888155670855968	360.186977786065	0	18.9430099044936						1023	48	4	NaN	NaN	NaN	0.0096544	1	6780	56.378	41.616	1	448620			516	112	445	445	516	516		
AFAVGVQQVLLK	12	Unmodified	_AFAVGVQQVLLK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.887355	1271.76016	1.3149	0.00083745	0.28563	0.00018192	1.6005	0.0010194	636.887532972265	13.779	0.15959	13.779	13.726	13.886	0	498	46	0.991429299781895	0.0302654273538991	0.991429299781895	401.407942622387	0	12.2538066298712						536	19	4	NaN	NaN	NaN	0.0002176	1	11555	99.305	93.041	1	274580			517	429	446	446	517	517		
AFDCPETEYPVK	12	Unmodified	_AFDCPETEYPVK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.326667	1454.63878	1.6552	0.0012055	3.7686	0.0027448	5.4238	0.0039503	728.329322146848	7.9704	0.088652	7.9704	7.8906	7.9793	0	462	43	1.01562323939346	0.0282028744341156	1.01562323939346	410.64768015445	0	11.4032886515805						128	11	2	NaN	NaN	NaN	0.0078132	1	17089	36.514	27	1	68588			518	240	447	447	518	518		
AFDFLSEETEASLASR	16	Unmodified	_AFDFLSEETEASLASR_			0	0	0	O60271	O60271	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.920506	1771.82646	1.7288	0.0015333	2.9145	0.0025849	4.6433	0.0041182	886.921959867246	15.322	0.15958	15.322	15.287	15.446	1.7764E-15	294	25	1.12800004657306	0.0159897747860325	1.12800004657306	455.315028008238	0	6.45424153719324						182	19	4	NaN	NaN	NaN	0.00014869	1	26457	94.507	87.651	1	42662			519	252	448	448	519	519		
AFDLFNPNFK	10	Unmodified	_AFDLFNPNFK_			0	0	0	Q9Y3D9	Q9Y3D9	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.806031	1211.59751	0.23605	0.00014324	0.91912	0.00055773	1.1552	0.00070097	606.806381133555	15.26	0.15959	15.26	15.18	15.34	0	594	49	0.926715457081489	0.0324241729460041	0.926715457081489	375.406803804322	0	13.1348355513483						420	19	3	NaN	NaN	NaN	0.0022065	1	9780	84.368	61.982	1	122740			520	3391	449	449	520	520		
AFDLIVDRPVTLVR	14	Unmodified	_AFDLIVDRPVTLVR_			0	0	1	O96000	O96000	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.650635	1612.93008	-0.64867	-0.00034941	-1.3527	-0.00072866	-2.0014	-0.0010781	538.649654534599	14.223	0.097546	14.223	14.187	14.285	0	726	58	0.837263974740672	0.0387691446522459	0.837263974740672	507.324868767589	0	23.4914576720254						320	12	4	NaN	NaN	NaN	0.014005	1	21992	25.613	25.613	1	79176			521	467	450	450	521	521		
AFDQGADAIYDHINEGK	17	Unmodified	_AFDQGADAIYDHINEGK_			0	0	0	Q9UDW1	Q9UDW1	Q9UDW1	UQCR10	Cytochrome b-c1 complex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.955112	1862.84351	0.59354	0.00036916	1.0373	0.00064513	1.6308	0.0010143	622.290103821383	10.277	0.15075	10.277	10.223	10.374	0	645	55	0.892219381832517	0.0365683394174512	0.892219381832517	540.006787784092	0	22.1326188440984						676	18	5	NaN	NaN	NaN	1.7875E-07	1	28747	126.17	115.92	1	318630			522	3195	451	451	522	522		
AFDQGADAIYDHINEGK	17	Unmodified	_AFDQGADAIYDHINEGK_			0	0	0	Q9UDW1	Q9UDW1	Q9UDW1	UQCR10	Cytochrome b-c1 complex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.429029	1862.84351	1.3745	0.0012816	0.98303	0.00091661	2.3575	0.0021982	932.430725170601	10.277	0.062068	10.277	10.241	10.303	0	234	49	1.16792504164217	0.0319092676377801	1.16792504164217	471.251788979661	0	12.8752265112763						176	8	3	NaN	NaN	NaN	9.5888E-07	1	28748	87.251	82.17	1	27308			523	3195	451	451	523	523		
AFDSGIIPMEFVNK	14	Unmodified	_AFDSGIIPMEFVNK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.394884	1566.77522	1.1392	0.00089362	0.90722	0.00071162	2.0465	0.0016052	784.395811871634	16.307	0.31033	16.307	16.156	16.466	0	393	73	1.0618830335572	0.0481679831630597	1.0618830335572	429.062314592861	0	19.4626580255076						1352	36	5	NaN	NaN	NaN	3.2818E-08	1	20556	169.81	145.97	1	582910			524	1235	452	452	524	524		
AFEALLSNIVK	11	Unmodified	_AFEALLSNIVK_			0	0	0	Q9Y2H6	Q9Y2H6	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.850438	1203.68632	-0.42131	-0.00025399	0.078771	4.7487E-05	-0.34254	-0.0002065	602.850444968797	16.28	0.079789	16.28	16.245	16.324	0	555	37	0.953040030838688	0.0242777450705638	0.953040030838688	386.099308197329	0	9.83549512404733						206	10	3	NaN	NaN	NaN	0.0040343	1	9587	61.48	45.023	1	44601			525	3342	453	453	525	525		
AFEDDDITHVEGSVDPIRDIEIIHEELQLK	30	Unmodified	_AFEDDDITHVEGSVDPIRDIEIIHEELQLK_			0	0	1	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	869.686141	3474.71546	0.55635	0.00048385	0.48228	0.00041944	1.0386	0.00090329	869.937003654237	19.162	0.10639	19.162	19.117	19.224	0	381	25	1.06991323971056	0.016055984619652	1.06991323971056	860.439930179601	0	12.9124584801245						331	13	6	NaN	NaN	NaN	0.026102	1	38644	22.212	21.724	1	84474			526	3044	454	454	526	526		
AFEDTLQLMER	11	Unmodified	_AFEDTLQLMER_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.829377	1351.6442	1.2202	0.00082586	3.5961	0.0024339	4.8162	0.0032598	676.831539789265	13.496	0.14188	13.496	13.451	13.593	0	498	31	0.991429299781895	0.0201811333938051	0.991429299781895	401.152970272519	0	8.16570743488398						264	17	4	NaN	NaN	NaN	0.0011823	1	13929	85.622	57.526	1	61051			527	408	455	455	527	527		
AFEDWLNDDLGSYQGAQGNR	20	Unmodified	_AFEDWLNDDLGSYQGAQGNR_			0	0	0	Q8N6T3	Q8N6T3	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1128.50125	2254.98794	1.8377	0.0020739	-0.01681	-1.897E-05	1.8209	0.0020549	1129.00157419191	15.535	0.062088	15.535	15.508	15.571	0	147	34	1.22562176648663	0.0218429449231461	1.22562176648663	493.895913206216	0	8.80217822897811						155	8	3	NaN	NaN	NaN	2.1896E-12	1	35233	110.9	105.29	1	28806			528	2266	456	456	528	528		
AFEEDQVAGR	10	Unmodified	_AFEEDQVAGR_			0	0	0	O43818	O43818	O43818	RRP9	U3 small nucleolar RNA-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.264727	1120.5149	1.5159	0.00085081	2.0216	0.0011346	3.5374	0.0019854	561.266870352627	4.5741	0.25712	4.5741	4.5031	4.7603	0	633	40	0.900343422309015	0.0263976438859336	0.900343422309015	365.057341342717	0	10.7033088218678						390	30	3	NaN	NaN	NaN	0.005559	1	7269	67.507	46.233	1	116750			529	235	457	457	529	529		
AFEHLQQLELIK	12	Unmodified	_AFEHLQQLELIK_			0	0	0	O43929	O43929	O43929	ORC4	Origin recognition complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.911559	1467.80856	1.5317	0.0011256	1.9852	0.001459	3.5169	0.0025846	734.913019700115	12.139	0.079829	12.139	12.103	12.183	0	342	31	1.09598084995137	0.0200340549752125	1.09598084995137	443.101277652728	0	8.09969933003441						160	10	3	NaN	NaN	NaN	0.00064418	1	17523	55.578	48.831	1	39379		+	530	245	458	458	530	530		
AFELLHLHLDLR	12	Unmodified	_AFELLHLHLDLR_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.948904	1475.82488	-1.6815	-0.00082891	-0.46903	-0.00023121	-2.1506	-0.0010601	492.948478611469	15.358	0.11527	15.358	15.322	15.437	0	762	22	0.812773098473386	0.0142992632781638	0.812773098473386	492.873926508079	0	8.67121961998862						170	14	3	NaN	NaN	NaN	0.0022506	1	17778	38.1	32.949	1	43574			531	2892	459	459	531	531		
AFENCSEDLQER	12	Unmodified	_AFENCSEDLQER_			0	0	0	O75828	O75828	O75828	CBR3	Carbonyl reductase [NADPH] 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.317362	1496.62017	1.929	0.0014454	-0.23418	-0.00017548	1.6948	0.0012699	749.317089989117	5.5937	0.079934	5.5937	5.5671	5.6471	0	459	34	1.01763759082241	0.0221548084259287	1.01763759082241	411.353403352949	0	8.95550236039657						164	10	3	NaN	NaN	NaN	1.7577E-05	1	18429	99.174	95.669	1	39396			532	364	460	460	532	532		
AFEPATGR	8	Unmodified	_AFEPATGR_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	424.716685	847.418816	-0.2567	-0.00010902	-0.6853	-0.00029106	-0.94199	-0.00040008	424.716212116406	3.2617	0.21281	3.2617	3.2084	3.4213	0	828	31	0.767766820543916	0.0204916061947072	0.767766820543916	312.518297319494	0	8.34107662112132						303	25	2	NaN	NaN	NaN	0.022403	1	1520	49.325	33.827	1	73762			533	1123	461	461	533	533		
AFESDVFHNR	10	Unmodified	_AFESDVFHNR_			0	0	0	O14545	O14545	O14545	TRAFD1	TRAF-type zinc finger domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.285994	1220.55744	1.3239	0.0008093	-3.7594	-0.0022981	-2.4355	-0.0014888	611.282723231411	6.4629	0.10641	6.4629	6.4096	6.5161	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	384.399610174892	0	9.01757865881342						240	13	3	NaN	NaN	NaN	5.3329E-05	1	10023	118.06	107.36	1	74937			534	102	462	462	534	534		
AFFESHPAPSAER	13	Unmodified	_AFFESHPAPSAER_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.34404	1444.67353	2.1589	0.0015617	0.15593	0.00011279	2.3149	0.0016745	723.345104776025	5.5228	0.22165	5.5228	5.4697	5.6913	0	465	49	1.01360860968299	0.0322452204768515	1.01360860968299	409.859750009117	0	13.0385810433917						435	26	4	NaN	NaN	NaN	0.0056471	1	16809	60.547	54.681	1	138800			535	1277	463	463	535	535		
AFFESHPAPSAER	13	Unmodified	_AFFESHPAPSAER_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.565119	1444.67353	0.47445	0.00022895	3.4073	0.0016443	3.8818	0.0018732	482.565981427187	5.5228	0.19517	5.5228	5.4519	5.6471	0	699	37	0.85560534332665	0.0244466676100031	0.85560534332665	518.951586171115	0	14.8276738004962						310	23	4	NaN	NaN	NaN	0.0038982	1	16810	57.293	55.494	1	93580			536	1277	463	463	536	536		
AFFPCFDTPAVK	12	Unmodified	_AFFPCFDTPAVK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.339381	1398.66421	0.97616	0.00068364	0.014909	1.0442E-05	0.99107	0.00069409	700.339289002812	14.675	0.16849	14.675	14.631	14.799	1.7764E-15	483	52	1.00151498427745	0.0342818598335937	1.00151498427745	405.095934571716	0	13.8664346177161						860	20	5	NaN	NaN	NaN	0.0006427	1	15399	97.277	81.398	1	358140			537	2892	464	464	537	537		
AFFSEVER	8	Unmodified	_AFFSEVER_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.742899	983.471246	0.14417	7.1037E-05	0.54382	0.00026796	0.68798	0.000339	492.742975871704	8.5736	0.088657	8.5736	8.5382	8.6268	0	681	40	0.867820189810857	0.0264526463218361	0.867820189810857	352.465521505183	0	10.7437530152994						213	11	3	NaN	NaN	NaN	0.0048612	1	3908	85.813	70.314	1	61283			538	3319	465	465	538	538		
AFGFSHLEALLDDSK	15	Unmodified	_AFGFSHLEALLDDSK_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.610505	1648.80969	-1.253	-0.00068991	-0.53167	-0.00029274	-1.7847	-0.00098265	550.944364180337	16.111	0.14189	16.111	16.067	16.209	0	741	73	0.827064408645228	0.0489613528104642	0.827064408645228	501.051870656123	0	29.6617496280881						520	17	4	NaN	NaN	NaN	2.455E-06	1	22995	100.07	69.153	1	182380			539	2529	466	466	539	539		
AFGFSHLEALLDDSK	15	Unmodified	_AFGFSHLEALLDDSK_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.41212	1648.80969	1.9209	0.0015855	0.4163	0.00034362	2.3372	0.0019292	825.412353467785	16.111	0.20394	16.111	15.987	16.191	0	285	43	1.13399579921816	0.0279744112588804	1.13399579921816	458.000285356866	0	11.2983560857025						452	24	4	NaN	NaN	NaN	2.4377E-08	1	22996	106.47	93.292	1	140160			540	2529	466	466	540	540		
AFGHHAVSLLDGGLR	15	Unmodified	_AFGHHAVSLLDGGLR_			0	0	0	P25325	P25325	P25325	MPST	3-mercaptopyruvate sulfurtransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.279313	1548.81611	-1.7012	-0.00087998	0.38626	0.0001998	-1.3149	-0.00068018	517.279707726573	9.3721	0.11526	9.3721	9.3366	9.4519	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	487.704538392566	0	9.91045623770219						253	14	4	NaN	NaN	NaN	0.0011132	1	20009	51.531	47.003	1	63135			541	836	467	467	541	541		
AFGYVCGGEGQHQFFAIK	18	Unmodified	_AFGYVCGGEGQHQFFAIK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.47526	2014.93597	1.6477	0.0016617	-2.6649	-0.0026874	-1.0171	-0.0010257	1009.4740457219	12.165	0.37245	12.165	11.926	12.298	0	165	121	1.21370334790578	0.0794998852244162	1.21370334790578	489.449776898518	0	32.0598943338904						2055	43	5	NaN	NaN	NaN	0.00013782	1	31884	68.108	60.901	1	369930			542	1489	468	468	542	542		
AFGYVCGGEGQHQFFAIK	18	Unmodified	_AFGYVCGGEGQHQFFAIK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.652599	2014.93597	0.84635	0.0005693	-0.17337	-0.00011662	0.67298	0.00045268	672.986872442376	12.157	0.1685	12.157	12.121	12.29	0	567	55	0.944945209309785	0.0364367993770142	0.944945209309785	571.599683143433	0	22.0407096342389						783	20	6	NaN	NaN	NaN	6.8056E-08	1	31885	114.93	111.08	1	394160			543	1489	468	468	543	543		
AFGYYGPLR	9	Unmodified	_AFGYYGPLR_			0	0	0	P84103	P84103	P84103	SRSF3	Serine/arginine-rich splicing factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.269084	1042.52362	1.0487	0.00054771	0.51492	0.00026893	1.5636	0.00081664	522.269203818394	10.135	0.24827	10.135	10.064	10.312	0	657	52	0.884090832094921	0.0345583335678743	0.884090832094921	358.793190742396	0	14.0249104700889						726	29	4	NaN	NaN	NaN	7.3548E-05	1	5283	96.51	84.861	1	389450			544	1486	469	469	544	544		
AFHITNDEPIPFWTFLSR	18	Unmodified	_AFHITNDEPIPFWTFLSR_			0	0	0	Q15738	Q15738	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.037218	2190.08982	-1.2427	-0.00090844	0.87839	0.00064214	-0.36428	-0.0002663	731.372539712036	19.321	0.062042	19.321	19.304	19.366	0	630	19	0.902373728295776	0.0121809917817419	0.902373728295776	545.549557283405	0	7.36428207673168						87	8	3	NaN	NaN	NaN	0.00025326	1	34565	30.862	30.343	1	15741			545	1865	470	470	545	545		
AFHNEAQVNPER	12	Unmodified	_AFHNEAQVNPER_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.228618	1410.66403	0.63916	0.00030119	1.9876	0.00093663	2.6268	0.0012378	471.229751105389	2.9513	0.63842	2.9513	2.774	3.4124	0	759	148	0.814815566123307	0.1000672858299	0.814815566123307	494.324143619304	0	60.7078183441182						1917	73	6	NaN	NaN	NaN	0.042742	1	15777	39.039	23.457	1	2336600			546	747	471	471	546	546		
AFHPTYEEK	9	Unmodified	_AFHPTYEEK_			0	0	0	Q9H3P7	Q9H3P7	Q9H3P7	ACBD3	Golgi resident protein GCP60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.266739	1120.51892	2.109	0.0011837	-0.54616	-0.00030654	1.5629	0.0008772	561.2662520644	3.2439	0.10641	3.2439	3.2173	3.3237	0	591	22	0.928742107665821	0.0141826244538193	0.928742107665821	376.571996888494	0	5.75055138300678						128	13	2	NaN	NaN	NaN	0.0066121	1	7270	65.156	54.454	1	31446			547	2882	472	472	547	547		
AFIHWVSQPLMCEVR	15	Unmodified	_AFIHWVSQPLMCEVR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.97977	1871.91748	-0.61826	-0.0003864	-0.75802	-0.00047375	-1.3763	-0.00086015	625.313715365738	14.161	0.088697	14.161	14.116	14.205	1.7764E-15	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	512.896125629376	0	12.3330671200637						299	11	4	NaN	NaN	NaN	0.00047135	1	28978	57.003	53.715	1	75417			548	1101	473	473	548	548		
AFIHWVSQPLMCEVR	15	Unmodified	_AFIHWVSQPLMCEVR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.97977	1871.91748	0.018214	1.1383E-05	-0.39904	-0.00024939	-0.38083	-0.00023801	625.31388094872	14.152	0.062061	14.152	14.125	14.187	0	648	58	0.890187667287968	0.0385918846730076	0.890187667287968	538.757834139324	0	23.3565134250036						288	8	3	NaN	NaN	NaN	0.00063563	1	28979	71.896	56.921	1	60193			549	1101	473	473	549	549		
AFIITLNSFGTELSK	15	Unmodified	_AFIITLNSFGTELSK_			0	0	0	Q8N8Y2	Q8N8Y2	Q8N8Y2	ATP6V0D2	V-type proton ATPase subunit d 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.948338	1639.88212	0.69541	0.0005709	2.0832	0.0017102	2.7786	0.0022811	820.950170371165	17.362	0.09754	17.362	17.317	17.415	0	306	31	1.12000185836644	0.0200037307887677	1.12000185836644	452.368900750942	0	8.07950954744928						204	12	3	NaN	NaN	NaN	2.3464E-08	1	22760	96.946	0	1	50835			550	2275	474	474	550	550		
AFIPAIDSFGFETDLR	16	Unmodified	_AFIPAIDSFGFETDLR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.954152	1797.89375	1.2386	0.0011147	0.58976	0.00053075	1.8283	0.0016454	900.455695860947	18.834	0.14187	18.834	18.781	18.922	0	285	76	1.13399579921816	0.0499371538919759	1.13399579921816	457.683675439873	0	20.1547661376206						602	17	4	NaN	NaN	NaN	6.9778E-05	1	27165	84.999	75.257	1	239000			551	1796	475	475	551	551		
AFITNIPFDVK	11	Unmodified	_AFITNIPFDVK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.850438	1263.68632	0.96904	0.00061326	-0.97828	-0.0006191	-0.0092329	-5.843E-06	632.849813851215	15.313	0.21279	15.313	15.207	15.42	0	561	73	0.948993180460448	0.0485689617606289	0.948993180460448	384.252865840837	0	19.6658554894784						1073	25	5	NaN	NaN	NaN	1.9233E-07	1	11335	132.39	100.25	1	1073200			552	1206	476	476	552	552		
AFLADPSAFVAAAPVAAATTAAPAAAAAPAK	31	Unmodified	_AFLADPSAFVAAAPVAAATTAAPAAAAAPAK_			0	0	0	P05388	P05388	P05388	RPLP0	60S acidic ribosomal protein P0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.160465	2751.45957	1.7218	0.0015809	0.70512	0.00064741	2.4269	0.0022283	918.495593673979	17.583	0.23056	17.583	17.486	17.716	0	207	211	1.18585551256002	0.139049012169809	1.18585551256002	716.012603692893	0	83.9569780551915						4245	27	6	NaN	NaN	NaN	2.0531E-15	1	37760	204.61	194.01	1	1857500			553	530	477	477	553	553		
AFLASGPYLTHQQK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AFLASGPYLTHQQK_			1	0	0	Q9Y6M9	Q9Y6M9	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.917372	1601.82019	1.7496	0.0014031	0.6045	0.00048476	2.3541	0.0018878	801.91785664494	13.708	0.20392	13.708	13.637	13.841	1.7764E-15	237	46	1.16593139812432	0.0299128815634933	1.16593139812432	471.01358361073	0	12.084221733809						684	24	5	NaN	NaN	NaN	1.2326E-11	1	21654	173.07	150.17	1	364780			554	3472	478	478	554	554		
AFLDALQNQAEASSK	15	Unmodified	_AFLDALQNQAEASSK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.899377	1591.7842	1.1168	0.00088999	0.81059	0.00064596	1.9274	0.0015359	796.900553782669	11.961	0.29266	11.961	11.855	12.148	0	375	61	1.07392668217569	0.0401399775748084	1.07392668217569	433.868916978772	0	16.2166457794418						1234	34	5	NaN	NaN	NaN	1.5456E-43	1	21325	277.1	238.06	1	862710			555	1608	479	479	555	555		
AFLDFHALPYQVVEVNPVR	19	Unmodified	_AFLDFHALPYQVVEVNPVR_			0	0	0	Q9H7Z7	Q9H7Z7	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.728384	2213.16332	-0.1589	-0.00011738	-0.53115	-0.00039237	-0.69004	-0.00050976	739.062534793232	17.708	0.079803	17.708	17.663	17.743	0	621	61	0.908462957275599	0.0405695604489756	0.908462957275599	549.194876103291	0	24.5255951779892						363	10	4	NaN	NaN	NaN	0.0014395	1	34831	31.722	30.098	1	92060			556	2919	480	480	556	556		
AFLDFYHSFLEK	12	Unmodified	_AFLDFYHSFLEK_			0	0	0	Q92888	Q92888	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.877185	1515.73982	0.27212	0.00020651	1.4932	0.0011332	1.7653	0.0013397	758.878217949664	16.954	0.079847	16.954	16.91	16.989	0	369	28	1.07793901817685	0.0180542692060639	1.07793901817685	435.678309179291	0	7.29712288777642						127	10	2	NaN	NaN	NaN	0.061364	1	19004	26.465	22.219	1	33501			557	2439	481	481	557	557		
AFLDSLPDVK	10	Unmodified	_AFLDSLPDVK_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.800414	1103.58628	-0.54514	-0.00030136	-2.5619	-0.0014162	-3.107	-0.0017176	552.799235667593	13.15	0.079818	13.15	13.105	13.185	0	678	37	0.869855008346864	0.0244161317005186	0.869855008346864	352.761127993436	0	9.90172164011574						208	10	3	NaN	NaN	NaN	0.057516	1	6816	28.096	22.348	1	64861			558	161	482	482	558	558		
AFLEPLGLAYTGPDNSSIDCR	21	Unmodified	_AFLEPLGLAYTGPDNSSIDCR_			0	0	0	Q96PV6	Q96PV6	Q96PV6	LENG8	Leukocyte receptor cluster member 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1148.54935	2295.08415	-0.21245	-0.00024401	-2.3716	-0.0027239	-2.5841	-0.0029679	1149.04881308119	16.395	0.079813	16.395	16.351	16.431	0	93	40	1.26131825079847	0.0257578369034963	1.26131825079847	508.226352522474	0	10.3786744463941						182	10	3	NaN	NaN	NaN	0.018956	1	35598	20.112	19.018	1	29478			559	2599	483	483	559	559		
AFLFDVVSK	9	Unmodified	_AFLFDVVSK_			0	0	0	Q9HB90;Q9NQL2	Q9HB90	Q9HB90	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.286943	1024.55933	-0.5903	-0.00030299	-1.9383	-0.00099491	-2.5286	-0.0012979	513.286122639129	14.657	0.14188	14.657	14.613	14.755	0	696	37	0.857641857947968	0.0244398769037869	0.857641857947968	348.138868666419	0	9.92077405828655						256	17	3	NaN	NaN	NaN	0.028428	1	4862	33.426	24.033	1	71183			560	2951	484	484	560	560		
AFLIEEQK	8	Unmodified	_AFLIEEQK_			0	0	0	P49207	P49207	P49207	RPL34	60S ribosomal protein L34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.26875	976.522947	0.80829	0.00039547	0.0075951	3.7161E-06	0.81589	0.00039919	489.268713578847	7.8374	0.16855	7.8374	7.7753	7.9438	0	705	52	0.851531465363931	0.0346255696673232	0.851531465363931	345.883789527563	0	14.0645692358131						790	20	4	NaN	NaN	NaN	0.0024533	1	3772	60.709	45.21	1	492580			561	1124	485	485	561	561		
AFLLESLLK	9	Unmodified	_AFLLESLLK_			0	0	0	Q96JM3	Q96JM3	Q96JM3	CHAMP1	Chromosome alignment-maintaining phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.318243	1032.62193	-0.86168	-0.00044576	-0.047504	-2.4575E-05	-0.90918	-0.00047034	517.318380065266	18.036	0.11529	18.036	18	18.115	0	678	28	0.869855008346864	0.0183108263146563	0.869855008346864	353.059943979129	0	7.43206540265868						191	14	3	NaN	NaN	NaN	0.0092428	1	5076	51.864	41.036	1	50021			562	2570	486	486	562	562		
AFLQGGQEATDIALLLR	17	Unmodified	_AFLQGGQEATDIALLLR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.5018	1814.98905	0.94839	0.00086161	0.21191	0.00019252	1.1603	0.0010541	909.003758713185	18.284	0.088686	18.284	18.24	18.328	0	252	43	1.15595906938629	0.0279282839901285	1.15595906938629	466.514473646566	0	11.2711159508647						274	11	3	NaN	NaN	NaN	9.3468E-11	1	27611	126.32	122.34	1	68142			563	1736	487	487	563	563		
AFLTLAEDILR	11	Unmodified	_AFLTLAEDILR_			0	0	0	P61026	P61026	P61026	RAB10	Ras-related protein Rab-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.36117	1260.70779	0.66657	0.00042085	-1.5446	-0.00097517	-0.87798	-0.00055433	631.359652927313	18.789	0.20392	18.789	18.745	18.949	0	519	115	0.97729762293174	0.0768051992063782	0.97729762293174	395.72360762072	0	31.0996668781409						964	24	5	NaN	NaN	NaN	2.3452E-07	1	11247	131.22	109.95	1	664750			564	1325	488	488	564	564		
AFNFLNEIK	9	Unmodified	_AFNFLNEIK_			0	0	0	P51809	P51809	P51809	VAMP7	Vesicle-associated membrane protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.295299	1094.57605	0.36069	0.00019777	-1.782	-0.00097705	-1.4213	-0.00077929	548.294268538336	14.498	0.14187	14.498	14.453	14.595	0	639	43	0.896281965493857	0.0284341478220305	0.896281965493857	363.515215963553	0	11.5323589943815						389	17	3	NaN	NaN	NaN	0.0022344	1	6573	72.038	50.763	1	131640			565	1199	489	489	565	565		
AFNSVDPTFDNSVPSK	16	Unmodified	_AFNSVDPTFDNSVPSK_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.909941	1723.80533	2.7654	0.0023863	-1.1081	-0.00095621	1.6573	0.0014301	863.410092440767	9.975	0.13297	9.975	9.9041	10.037	0	354	34	1.08796502040166	0.0220450526465417	1.08796502040166	439.249959474411	0	8.9003674750773						300	16	3	NaN	NaN	NaN	0.0041953	1	25151	59.731	53.703	1	99627			566	2649	490	490	566	566		
AFPMPGFDEH	10	Unmodified	_AFPMPGFDEH_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.247492	1146.48043	1.0346	0.00059412	-1.8525	-0.0010638	-0.8179	-0.00046968	574.246462488743	12.777	0.2838	12.777	12.662	12.946	0	630	58	0.902373728295776	0.0385865321490887	0.902373728295776	365.779859113786	0	15.6411649082905						1025	33	4	NaN	NaN	NaN	0.00072549	1	7960	81.32	63.925	1	611860			567	954	491	491	567	567		
AFQGLLDTYSVWR	13	Unmodified	_AFQGLLDTYSVWR_			0	0	0	Q6XQN6	Q6XQN6	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.398815	1554.78308	0.65784	0.00051206	0.58463	0.00045507	1.2425	0.00096713	778.399293048168	16.972	0.070938	16.972	16.945	17.016	0	324	52	1.1079963157843	0.034050864491993	1.1079963157843	447.725004917552	0	13.7594532174351						244	9	3	NaN	NaN	NaN	0.00012575	1	20204	85.821	84.347	1	49913			568	2093	492	492	568	568		
AFQGLLDTYSVWR	13	Unmodified	_AFQGLLDTYSVWR_			0	0	0	Q6XQN6	Q6XQN6	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.398815	1554.78308	0.35789	0.00027858	1.6905	0.0013159	2.0484	0.0015945	778.39937770846	16.98	0.12417	16.98	16.918	17.043	0	393	43	1.0618830335572	0.028121237288756	1.0618830335572	429.091302020996	0	11.3633780193774						292	15	5	NaN	NaN	NaN	0.00044371	1	20205	99.276	88.489	1	127180			569	2093	492	492	569	569		
AFQKMDTK	8	Oxidation (M)	_AFQKM(Oxidation (M))DTK_	AFQKM(1)DTK	AFQKM(61)DTK	0	1	1	Q9Y3B4	Q9Y3B4	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	1	984.481893	983.474617	2.624	0.0025833	-4.4062	-0.0043378	-1.7822	-0.0017545	984.477595648436	10.596	0.11526	10.596	10.543	10.658	0	294	394	1.12800004657306	0.261459962991799	1.12800004657306	229.072081728317	0	53.0967868246987						2600	14	3	NaN	NaN	NaN	0.02649	1	3909	60.709	34.486	1	835380			570	3380	493	493	570	570	648	
AFQYVETHGEVCPANWTPDSPTIK	24	Unmodified	_AFQYVETHGEVCPANWTPDSPTIK_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	916.430515	2746.26972	1.7035	0.0015611	-0.35352	-0.00032397	1.35	0.0012372	916.7647326944	12.236	0.14189	12.236	12.183	12.325	0	483	160	1.00151498427745	0.106775732271734	1.00151498427745	604.714623245131	0	64.4711738976212						2285	17	5	NaN	NaN	NaN	5.0576E-18	1	37746	169.6	163.03	1	666150			571	898	494	494	571	571		
AFSDPFVEAEK	11	Unmodified	_AFSDPFVEAEK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.298236	1238.58192	1.8386	0.0011405	0.087558	5.4312E-05	1.9261	0.0011948	620.298432961031	11.012	0.29264	11.012	10.888	11.181	0	567	70	0.944945209309785	0.04654847479161	0.944945209309785	382.697630903462	0	18.8518771770169						1244	34	4	NaN	NaN	NaN	6.39E-06	1	10567	124.81	100.68	1	676870			572	955	495	495	572	572		
AFSGYLGTDQSK	12	Unmodified	_AFSGYLGTDQSK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.306592	1272.59863	1.7402	0.0011091	1.3826	0.00088116	3.1229	0.0019902	637.808926487249	7.1634	0.30156	7.1634	6.9949	7.2964	0	543	76	0.961130371139249	0.0505681634455363	0.961130371139249	389.137813146415	0	20.4737932843614						776	35	3	NaN	NaN	NaN	0.049937	1	11563	39.293	32.142	1	481770			573	634	496	496	573	573		
AFSITQGLLK	10	Unmodified	_AFSITQGLLK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.318774	1076.623	0.43026	0.00023205	-3.0304	-0.0016344	-2.6002	-0.0014023	539.31719840909	13.247	0.13301	13.247	13.212	13.345	0	651	28	0.888155670855968	0.0182854326605286	0.888155670855968	360.294014204461	0	7.41776712226351						212	16	3	NaN	NaN	NaN	0.0075034	1	6134	65.156	21.422	1	279370			574	141	497	497	574	574		
AFSSPQEEEEAGFTGR	16	Unmodified	_AFSSPQEEEEAGFTGR_			0	0	0	Q14241	Q14241	Q14241	TCEB3	Transcription elongation factor B polypeptide 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.38683	1740.75911	2.5492	0.0022214	0.6498	0.00056623	3.199	0.0027876	871.387753439202	7.9793	0.088717	7.9793	7.935	8.0237	-8.8818E-16	366	40	1.07994477139643	0.0260676102408008	1.07994477139643	435.978019482775	0	10.5235984158133						252	11	3	NaN	NaN	NaN	1.7086E-06	1	25616	115.35	114.38	1	65077			575	1740	498	498	575	575		
AFSVNIFK	8	Unmodified	_AFSVNIFK_			0	0	0	P11279	P11279	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.260728	924.506903	-0.3863	-0.00017896	-2.2203	-0.0010286	-2.6066	-0.0012075	463.259653502253	12.893	0.12416	12.893	12.848	12.972	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	330.398345899014	0	8.30336228494065						260	15	3	NaN	NaN	NaN	0.036908	1	2786	34.931	20.396	1	81765			576	649	499	499	576	576		
AFSYYGPLR	9	Unmodified	_AFSYYGPLR_			0	0	0	Q16629	Q16629	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.274367	1072.53418	0.74729	0.0004015	2.411	0.0012954	3.1583	0.0016968	537.275394203786	10.064	0.11525	10.064	9.9928	10.108	0	642	46	0.894250814548268	0.0304799546936941	0.894250814548268	362.784048827208	0	12.3652572544024						265	14	3	NaN	NaN	NaN	0.060972	1	6016	17.395	12.488	1	71798			577	1894	500	500	577	577		
AFTALCYSADGHSILAGGMSK	21	Unmodified	_AFTALCYSADGHSILAGGMSK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1079.00881	2156.00306	0.99684	0.0010756	1.2894	0.0013913	2.2862	0.0024669	1079.51136892395	12.733	0.05322	12.733	12.706	12.76	0	99	46	1.25735632164274	0.0297043028427506	1.25735632164274	506.826608328754	0	11.9734802326298						139	7	3	NaN	NaN	NaN	0.034199	1	34120	30.959	7.8514	1	19950			578	1826	501	501	578	578		
AFTGFIVEADTPGIQIGR	18	Unmodified	_AFTGFIVEADTPGIQIGR_			0	0	0	P11310	P11310	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.499258	1890.98396	0.95808	0.00090682	-4.4539	-0.0042156	-3.4958	-0.0033088	946.99770059707	16.36	0.1064	16.36	16.315	16.422	0	213	43	1.18187287897418	0.0278861008115292	1.18187287897418	476.827229058323	0	11.2506619076864						283	13	4	NaN	NaN	NaN	7.5908E-07	1	29395	95.656	77.558	1	71363			579	650	502	502	579	579		
AFTHTAQYDEAISDYFR	17	Unmodified	_AFTHTAQYDEAISDYFR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.977916	2033.91192	1.4089	0.00095665	-2.4572	-0.0016684	-1.0483	-0.00071175	679.642623655766	12.68	0.2217	12.68	12.626	12.848	0	531	94	0.969216233931596	0.0627392811075295	0.969216233931596	586.243902395635	0	37.948725684026						1000	26	5	NaN	NaN	NaN	0.00010253	1	32218	121.69	117.71	1	388810			580	929	503	503	580	580		
AFTHTAQYDEAISDYFR	17	Unmodified	_AFTHTAQYDEAISDYFR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.977916	2033.91192	0.4099	0.00027831	-1.2456	-0.00084575	-0.83573	-0.00056744	679.311278273934	12.68	0.070934	12.68	12.653	12.724	0	645	40	0.892219381832517	0.0264122944165538	0.892219381832517	539.671282411405	0	15.9758430375421						290	9	4	NaN	NaN	NaN	6.6205E-06	1	32219	126.17	121.36	1	80939			581	929	503	503	581	581		
AFTHTAQYDEAISDYFR	17	Unmodified	_AFTHTAQYDEAISDYFR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.96324	2033.91192	1.9188	0.0019533	1.4584	0.0014846	3.3772	0.0034378	1018.46473292392	12.671	0.11527	12.671	12.618	12.733	0	213	61	1.18187287897418	0.039837296457305	1.18187287897418	476.583072143596	0	16.0641482424036						511	14	4	NaN	NaN	NaN	0.051285	1	32220	21.361	20.842	1	122140			582	929	503	503	582	582		
AFTKPEEACSFILSADFPALVVK	23	Unmodified	_AFTKPEEACSFILSADFPALVVK_			0	0	1	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.441692	2539.30325	0.74441	0.00063084	-1.1487	-0.00097344	-0.40427	-0.00034259	847.775278664151	18.293	0.12413	18.293	18.231	18.355	0	477	91	1.0055473068722	0.060509987964975	1.0055473068722	607.398564529967	0	36.5509206563095						1000	15	5	NaN	NaN	NaN	1.2466E-06	1	36985	70.831	65.965	1	257190			583	801	504	504	583	583		
AFTMDCITLEGDQVSHR	17	Unmodified	_AFTMDCITLEGDQVSHR_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.451124	1978.8877	1.134	0.0011232	2.1905	0.0021696	3.3245	0.0032928	990.953534672809	11.811	0.079817	11.811	11.775	11.855	0	141	40	1.2295923935727	0.0258073114801105	1.2295923935727	495.919132665093	0	10.4086033652562						273	10	5	NaN	NaN	NaN	2.7897E-10	1	31264	105.08	97.113	1	42192			584	3321	505	505	584	584		
AFTYINLDK	9	Unmodified	_AFTYINLDK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.787307	1083.56006	0.59217	0.00032142	1.6648	0.00090363	2.257	0.001225	542.787757339212	10.649	0.17733	10.649	10.551	10.729	0	645	31	0.892219381832517	0.020312920651839	0.892219381832517	361.91322452774	0	8.23958183645811						289	21	3	NaN	NaN	NaN	0.066586	1	6302	28.096	19.333	1	95567			585	495	506	506	585	585		
AFVAIGDYNGHVGLGVK	17	Unmodified	_AFVAIGDYNGHVGLGVK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.973778	1715.8995	-0.46569	-0.00026683	0.18214	0.00010436	-0.28355	-0.00016247	573.307837897832	11.89	0.15965	11.89	11.855	12.015	0	648	55	0.890187667287968	0.0365835629359025	0.890187667287968	539.117643290454	0	22.1558273136484						606	19	4	NaN	NaN	NaN	3.2531E-10	1	24941	74.524	73.472	1	160550			586	717	507	507	586	586		
AFVAIGDYNGHVGLGVK	17	Unmodified	_AFVAIGDYNGHVGLGVK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.957029	1715.8995	1.4834	0.0012742	0.57794	0.00049643	2.0613	0.0017706	858.957324224911	11.89	0.22169	11.89	11.846	12.068	0	219	49	1.17788915118882	0.0318742099074689	1.17788915118882	475.572983017473	0	12.8692186966159						528	26	4	NaN	NaN	NaN	3.4616E-10	1	24943	101.64	89.625	1	166540			587	717	507	507	587	587		
AFVDFLSDEIK	11	Unmodified	_AFVDFLSDEIK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.329536	1282.64452	1.33	0.0008543	1.1563	0.00074272	2.4863	0.001597	642.330495292248	16.484	0.50553	16.484	16.422	16.927	0	477	76	1.0055473068722	0.0504075528298491	1.0055473068722	407.086894108889	0	20.4070499526891						1715	58	6	NaN	NaN	NaN	0.00018797	1	11840	108.93	94.166	1	3700500			588	1566	508	508	588	588		
AFVHWYVGEGMEEGEFSEAR	20	Unmodified	_AFVHWYVGEGMEEGEFSEAR_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.34427	2329.01098	1.2091	0.00093991	-0.49754	-0.00038676	0.71158	0.00055314	777.67819106503	13.708	0.27486	13.708	13.664	13.939	0	597	253	0.924688525662974	0.169804549315684	0.924688525662974	558.830406113991	0	102.620442041337						4032	32	6	NaN	NaN	NaN	1.7087E-29	1	35885	234.58	219.56	1	1202500			589	1447;2696;1448	509	509	589	589		
AFVHWYVGEGMEEGEFSEAR	20	Unmodified	_AFVHWYVGEGMEEGEFSEAR_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.51277	2329.01098	1.0637	0.0012398	-0.31783	-0.00037043	0.74591	0.00086937	1166.01406666672	13.7	0.079823	13.7	13.673	13.753	0	102	76	1.25537494996371	0.0495411151226253	1.25537494996371	505.78724406928	0	19.9599841359874						465	10	4	NaN	NaN	NaN	0.0021728	1	35886	30.862	29.919	1	78695			590	1447;2696;1448	509	509	590	590		
AFVHWYVGEGMEEGEFSEAR	20	Oxidation (M)	_AFVHWYVGEGM(Oxidation (M))EEGEFSEAR_	AFVHWYVGEGM(1)EEGEFSEAR	AFVHWYVGEGM(170)EEGEFSEAR	0	1	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.675909	2345.0059	0.69041	0.00054036	0.72516	0.00056756	1.4156	0.0011079	783.010720699952	12.112	0.15077	12.112	12.059	12.21	0	591	100	0.928742107665821	0.0668425056358196	0.928742107665821	561.25746945649	0	40.3942658092446						1096	18	5	NaN	NaN	NaN	3.3144E-16	1	35998	171.51	168.25	1	260570			591	1447;2696;1448	509	510	591	591	518	
AFVHWYVGEGMEEGEFSEAREDMAALEK	28	Unmodified	_AFVHWYVGEGMEEGEFSEAREDMAALEK_			0	0	1	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	805.111489	3216.41685	1.2098	0.00097403	0.1943	0.00015643	1.4041	0.0011305	805.362788271282	15.961	0.14189	15.961	15.916	16.058	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	833.235568388536	0	16.1836561260575						592	17	7	NaN	NaN	NaN	5.0651E-10	1	38472	61.211	60.25	1	196100			592	1447;2696;1448	510	511	592	592		
AFVPAILFK	9	Unmodified	_AFVPAILFK_			0	0	0	Q9HAU5	Q9HAU5	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.310221	1004.60589	-1.7419	-0.00087672	-1.2519	-0.0006301	-2.9938	-0.0015068	503.309436447913	15.916	0.12418	15.916	15.863	15.987	0	720	28	0.841341816837976	0.0183464663932061	0.841341816837976	341.612161687969	0	7.44926249770106						214	15	3	NaN	NaN	NaN	0.012885	1	4394	36.57	28.923	1	49710			593	2945	511	512	593	593		
AFYAELYHIISSNLEK	16	Unmodified	_AFYAELYHIISSNLEK_			0	0	0	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.327998	1896.96216	-0.19369	-0.00012267	0.8017	0.00050774	0.60802	0.00038507	633.328253909405	18.736	0.10642	18.736	18.701	18.807	0	615	46	0.912521036363781	0.0304461528019007	0.912521036363781	552.220806384584	0	18.4247796835133						286	13	4	NaN	NaN	NaN	0.0024855	1	29543	49.097	44.569	1	74720			594	3274	512	513	594	594		
AFYAELYHIISSNLEK	16	Unmodified	_AFYAELYHIISSNLEK_			0	0	0	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.488359	1896.96216	0.5351	0.00050807	4.0305	0.0038269	4.5656	0.004335	949.993528594057	18.745	0.079791	18.745	18.71	18.789	0	117	40	1.24546401832526	0.0257754900504674	1.24546401832526	502.471542252157	0	10.398895550093						194	10	3	NaN	NaN	NaN	2.5009E-06	1	29544	82.437	74.861	1	48347			595	3274	512	513	595	595		
AFYGDTLVTGFAR	13	Unmodified	_AFYGDTLVTGFAR_			0	0	0	Q9HCC0	Q9HCC0	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.359159	1416.70376	1.3368	0.00094824	2.5668	0.0018208	3.9035	0.002769	709.360453464948	14.178	0.133	14.178	14.134	14.267	0	450	34	1.02367897599655	0.0221486894009117	1.02367897599655	414.009265491738	0	8.95765454355393						327	16	4	NaN	NaN	NaN	0.006265	1	15988	40.533	27.937	1	93966			596	2960	513	514	596	596		
AFYPEEISSMVLTK	14	Unmodified	_AFYPEEISSMVLTK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.907824	1613.8011	2.2587	0.0018248	-0.11364	-9.1812E-05	2.145	0.001733	807.908221522318	16.156	0.44334	16.156	15.97	16.413	0	387	79	1.06589869032374	0.0521676009310204	1.06589869032374	430.574914095381	0	21.0733538687566						2930	51	6	NaN	NaN	NaN	1.5264E-05	1	22006	86.838	80.972	1	3119600			597	618	514	515	597	597		
AGAAGGPEEEAEK	13	Unmodified	_AGAAGGPEEEAEK_			0	0	0	Q8WW12	Q8WW12	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.278032	1214.54151	1.5522	0.00094419	-0.90654	-0.00055143	0.6457	0.00039276	608.277422245116	2.2153	0.18622	2.2153	2.1532	2.3395	0	639	19	0.896281965493857	0.0121860610078076	0.896281965493857	363.068476739553	0	4.93636464627753						165	22	2	NaN	NaN	NaN	0.03003	1	9850	32.051	26.9	1	31396			598	2386	515	516	598	598		
AGAASLDVIQEVEYVK	16	Unmodified	_AGAASLDVIQEVEYVK_			0	0	0	Q9UJV9	Q9UJV9	Q9UJV9	DDX41	Probable ATP-dependent RNA helicase DDX41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.44616	1690.87777	0.72816	0.00061635	3.6295	0.0030722	4.3577	0.0036885	846.448998393365	14.87	0.070901	14.87	14.843	14.914	0	300	28	1.12400150285141	0.0179946865546097	1.12400150285141	453.869631397236	0	7.26621960284797						135	9	3	NaN	NaN	NaN	4.0264E-09	1	24237	97.594	84.42	1	27524			599	3250	516	517	599	599		
AGAFDAVPCYHWSVGGK	17	Unmodified	_AGAFDAVPCYHWSVGGK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.950756	1820.83044	-2.3772	-0.0014452	-0.022994	-1.3979E-05	-2.4002	-0.0014592	608.284819687261	12.103	0.088693	12.103	12.059	12.148	0	783	43	0.798467866007927	0.0286124604760164	0.798467866007927	483.346955575309	0	17.3203534561077						248	11	4	NaN	NaN	NaN	0.0014934	1	27739	59.77	55.788	1	48277			600	2083	517	518	600	600		
AGAGGGNDIQWCFSQVK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGAGGGNDIQWCFSQVK_			1	0	0	P63151	P63151	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.920317	1835.82608	1.4708	0.0013516	1.0395	0.00095517	2.5103	0.0023067	919.423708448149	14.728	0.16851	14.728	14.684	14.852	0	201	40	1.18983705239708	0.025878237088949	1.18983705239708	480.145395051644	0	10.4428722784193						496	20	5	NaN	NaN	NaN	9.4091E-11	1	28120	117.41	114.12	1	161900			601	1428	518	519	601	601		
AGAIAPCEVTVPAQNTGLGPEK	22	Unmodified	_AGAIAPCEVTVPAQNTGLGPEK_			0	0	0	P05388;Q8NHW5	P05388	P05388	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.55444	2179.09432	1.9178	0.0020914	-0.3543	-0.00038638	1.5635	0.0017051	1091.05594840207	10.578	0.18619	10.578	10.525	10.711	0	144	88	1.22760721615852	0.05758599445045	1.22760721615852	494.801505879271	0	23.210711371347						1423	22	5	NaN	NaN	NaN	2.4136E-11	1	34441	99.909	95.075	1	435650			602	530	519	520	602	602		
AGAISASGPELQGAGHSK	18	Unmodified	_AGAISASGPELQGAGHSK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.415725	1636.8169	2.8112	0.0023036	-2.5226	-0.0020671	0.28858	0.00023647	819.413180428949	4.6095	0.1064	4.6095	4.5563	4.6627	0	276	61	1.13998907770044	0.0399689530119671	1.13998907770044	460.448982535366	0	16.1437193630728						314	13	2	NaN	NaN	NaN	1.8333E-10	1	22688	141.87	118.92	1	75183			603	1584	520	521	603	603		
AGAISASGPELQGAGHSK	18	Unmodified	_AGAISASGPELQGAGHSK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.612909	1636.8169	1.0135	0.00055398	-0.21445	-0.00011722	0.79903	0.00043676	546.613460952217	4.6095	0.17734	4.6095	4.5563	4.7337	0	666	52	0.877991458330206	0.0345871250376812	0.877991458330206	531.936911094902	0	20.9548376372449						306	21	4	NaN	NaN	NaN	0.0025479	1	22689	59.77	52.195	1	119170			604	1584	520	521	604	604		
AGATSEGVLANFFNSLLSK	19	Unmodified	_AGATSEGVLANFFNSLLSK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.501997	1924.98944	1.087	0.0010473	0.19269	0.00018566	1.2797	0.001233	964.004235679376	20.102	0.035461	20.102	20.102	20.137	0	228	31	1.17191150690002	0.0199323285473259	1.17191150690002	472.747452873479	0	8.04067328898532						90	5	4	NaN	NaN	NaN	6.643E-07	1	30177	94.63	92.919	1	36741			605	3465	521	522	605	605		
AGAYDFPSPEWDTVTPEAK	19	Unmodified	_AGAYDFPSPEWDTVTPEAK_			0	0	0	Q13555;Q13554;Q13557;Q9UQM7	Q13555	Q13555	CAMK2G;CAMK2B;CAMK2D;CAMK2A	Calcium/calmodulin-dependent protein kinase type II subunit gamma;Calcium/calmodulin-dependent protein kinase type II subunit beta;Calcium/calmodulin-dependent protein kinase type II subunit delta;Calcium/calmodulin-dependent protein kinase type II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.97855	2079.94255	1.6166	0.0016829	1.4809	0.0015415	3.0975	0.0032244	1041.48190333395	14.24	0.1596	14.24	14.178	14.338	0	183	31	1.20177511391933	0.0198858489699314	1.20177511391933	484.535810468058	0	8.0176447622278						320	19	4	NaN	NaN	NaN	0.042855	1	33020	36.181	27.807	1	63466			606	1683	522	523	606	606		
AGCAVTSLLASELTK	15	Unmodified	_AGCAVTSLLASELTK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.903073	1519.79159	1.4023	0.001067	0.13071	9.9458E-05	1.533	0.0011664	760.903419102168	15.03	0.19509	15.03	14.967	15.163	0	381	55	1.06991323971056	0.0361409246465043	1.06991323971056	432.424045474484	0	14.6069833167572						639	23	5	NaN	NaN	NaN	5.3137E-12	1	19140	112.73	91.639	1	220800			607	270	523	524	607	607		
AGCECLNESDEHGFDNCLR	19	Unmodified	_AGCECLNESDEHGFDNCLR_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.633498	2281.87866	1.4403	0.001097	0.61923	0.00047163	2.0595	0.0015686	761.968249391334	7.4738	0.097536	7.4738	7.4383	7.5358	8.8818E-16	594	61	0.926715457081489	0.0405189944749071	0.926715457081489	560.12392723726	0	24.4904281455123						546	12	5	NaN	NaN	NaN	1.0292E-10	1	35478	74.733	74.519	1	141570			608	198	524	525	608	608		
AGDDYEVLELDDVPK	15	Unmodified	_AGDDYEVLELDDVPK_			0	0	0	O43164	O43164	O43164	PJA2	E3 ubiquitin-protein ligase Praja-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.396332	1676.77811	2.2904	0.0019226	1.3137	0.0011027	3.6042	0.0030253	839.397756503952	13.62	0.097547	13.62	13.567	13.664	0	357	31	1.08596037261705	0.0200423371753535	1.08596037261705	438.538679471326	0	8.09361031951585						166	12	2	NaN	NaN	NaN	0.03665	1	23806	48.822	44.516	1	60995			609	186	525	526	609	609		
AGDEFVEK	8	Unmodified	_AGDEFVEK_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.713808	893.413062	-0.12931	-5.7894E-05	0.81075	0.00036298	0.68144	0.00030509	447.714209576402	3.5721	0.23051	3.5721	3.5278	3.7583	0	834	25	0.763668499782291	0.016395568449004	0.763668499782291	310.595088457598	0	6.6683162055038						231	27	3	NaN	NaN	NaN	0.022417	1	2222	51.864	44.514	1	56946			610	1910	526	527	610	610		
AGDMENAENILTVMR	15	Unmodified	_AGDMENAENILTVMR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.392547	1662.77054	2.0712	0.001724	-0.57572	-0.00047923	1.4954	0.0012448	832.393151646218	14.693	0.18625	14.693	14.639	14.826	0	366	49	1.07994477139643	0.0320898495597994	1.07994477139643	436.139543837786	0	12.9596000828237						839	22	6	NaN	NaN	NaN	1.8612E-12	1	23417	168.43	141.85	1	396550			611	1055	527	528	611	611		
AGDNILAVLK	10	Unmodified	_AGDNILAVLK_			0	0	0	Q7Z2K6	Q7Z2K6	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.303124	1012.5917	-1.0063	-0.00051051	-1.6665	-0.00084544	-2.6729	-0.001356	507.30231997119	13.283	0.12414	13.283	13.23	13.354	0	717	31	0.84338031290707	0.0203835468475623	0.84338031290707	342.403368969432	0	8.27550158017578						230	15	3	NaN	NaN	NaN	0.002916	1	4577	60.892	50.813	1	61963			612	2127	528	529	612	612		
AGDTLSGTCLLIANK	15	Unmodified	_AGDTLSGTCLLIANK_			0	0	0	Q86X55	Q86X55	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.400698	1532.78684	1.8539	0.0014227	-0.62598	-0.00048038	1.228	0.00094234	767.399810192962	11.474	0.25734	11.474	11.323	11.58	0	393	73	1.0618830335572	0.0482411232831763	1.0618830335572	429.145657983852	0	19.4959971475274						389	30	2	NaN	NaN	NaN	0.0012015	1	19518	86.243	71.787	1	173160			613	2183	529	530	613	613		
AGDTVIPLYIPQCGECK	17	Unmodified	_AGDTVIPLYIPQCGECK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.963336	1919.91212	1.8598	0.0017872	1.8485	0.0017764	3.7084	0.0035636	961.466644070739	14.09	0.19508	14.09	13.992	14.187	0	249	67	1.15795408347545	0.0438692249147734	1.15795408347545	467.125883413962	0	17.697118336069						742	23	6	NaN	NaN	NaN	0.00029875	1	30057	45.183	33.974	1	287380			614	658	530	531	614	614		
AGEAAELQDAEVESSAK	17	Unmodified	_AGEAAELQDAEVESSAK_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.89977	1703.78499	2.893	0.0024674	2.4117	0.002057	5.3047	0.0045244	852.902611201933	6.7909	0.15959	6.7909	6.7289	6.8885	0	342	37	1.09598084995137	0.0240375557134762	1.09598084995137	442.527694315368	0	9.70572077726899						319	19	4	NaN	NaN	NaN	0.00015499	1	24596	63.79	47.031	1	87535			615	3137	531	532	615	615		
AGEARPGPTAESASGPSEDPSVNFLK	26	Unmodified	_AGEARPGPTAESASGPSEDPSVNFLK_			0	0	1	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.748901	2570.22487	1.0981	0.00094185	-0.11914	-0.00010219	0.97892	0.00083967	858.083387165304	9.4342	0.088741	9.4342	9.3987	9.4874	0	510	40	0.983355730988811	0.0262518066023084	0.983355730988811	593.954892658802	0	15.8563055883092						326	11	5	NaN	NaN	NaN	4.9163E-06	1	37110	70.337	68.489	1	85500			616	1673	532	533	616	616		
AGEGNEEISNMIHSYIK	17	Unmodified	_AGEGNEEISNMIHSYIK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.300002	1890.87818	0.69361	0.00043787	-0.15412	-9.7297E-05	0.53948	0.00034058	631.299837484337	13.788	0.088649	13.788	13.744	13.832	0	591	25	0.928742107665821	0.01621208273842	0.928742107665821	562.050262841779	0	9.81112548804583						190	11	4	NaN	NaN	NaN	0.022435	1	29385	55.782	55.163	1	46780			617	2140	533	534	617	617		
AGEGNEEISNMIHSYIK	17	Unmodified	_AGEGNEEISNMIHSYIK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.446365	1890.87818	1.5373	0.001455	0.55377	0.00052411	2.0911	0.0019791	946.948462878394	13.779	0.09752	13.779	13.744	13.841	0	144	37	1.22760721615852	0.0238270338663331	1.22760721615852	495.278954966231	0	9.61303279903387						260	12	4	NaN	NaN	NaN	0.00012784	1	29386	65.12	64.444	1	59529			618	2140	533	534	618	618		
AGEGTYALDSESCMEK	16	Unmodified	_AGEGTYALDSESCMEK_			0	0	0	O00541	O00541	O00541	PES1	Pescadillo homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.361109	1746.70767	2.4499	0.0021421	0.71339	0.00062376	3.1633	0.0027659	874.36149152129	7.066	0.1331	7.066	7.0214	7.1545	0	360	55	1.08395544855938	0.0360911337192322	1.08395544855938	437.585371216018	0	14.5697428497883						486	16	5	NaN	NaN	NaN	3.9757E-09	1	25787	135.21	129.18	1	140950			619	90	534	535	619	619		
AGEGTYALDSESCMEK	16	Oxidation (M)	_AGEGTYALDSESCM(Oxidation (M))EK_	AGEGTYALDSESCM(1)EK	AGEGTYALDSESCM(80)EK	0	1	0	O00541	O00541	O00541	PES1	Pescadillo homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.358567	1762.70258	2.3394	0.0020642	-1.029	-0.00090795	1.3104	0.0011563	882.35768871187	5.3455	0.053197	5.3455	5.3189	5.3721	0	372	22	1.07593298845566	0.0140441447605724	1.07593298845566	434.315728652405	0	5.66911975971931						81	7	3	NaN	NaN	NaN	6.4922E-06	1	26211	79.795	79.607	1	13193			620	90	534	536	620	620	31	
AGFAGDDAPR	10	Unmodified	_AGFAGDDAPR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.727781	975.441008	2.5934	0.0012675	0.34256	0.00016742	2.936	0.0014349	488.727676028257	3.8115	0.91329	3.8115	3.6962	4.6095	0	705	103	0.851531465363931	0.0692848911751004	0.851531465363931	345.889115525507	0	28.1432814905957						3526	104	4	NaN	NaN	NaN	0.00030157	1	3738	102.46	78.889	1	7299600			621	1310;1436;1444	535	537	621	621		
AGFAGDQIPK	10	Unmodified	_AGFAGDQIPK_			0	0	0	P42025;P61163	P42025;P61163	P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.263999	1002.51345	-1.4761	-0.00074137	0.6669	0.00033496	-0.80916	-0.00040641	502.264219315583	6.3121	0.22171	6.3121	6.2678	6.4895	0	783	40	0.798467866007927	0.0265816558003595	0.798467866007927	324.21307600844	0	10.7933215090043						405	26	3	NaN	NaN	NaN	0.00051604	1	4353	95.311	66.209	1	159560			622	1332;1039	536	538	622	622		
AGFDSDYDQALADIR	15	Unmodified	_AGFDSDYDQALADIR_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.878641	1655.74273	1.8562	0.0015385	2.8797	0.0023869	4.7359	0.0039255	828.880763549979	13.726	0.15071	13.726	13.691	13.841	0	372	31	1.07593298845566	0.0200644481678189	1.07593298845566	434.534600159893	0	8.10338288311658						266	18	3	NaN	NaN	NaN	3.3761E-06	1	23205	102.57	96.539	1	60003			623	1218	537	539	623	623		
AGFFGTVVEYGAER	14	Unmodified	_AGFFGTVVEYGAER_			0	0	0	Q9NVH1	Q9NVH1	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.867348	1501.72014	1.0427	0.00078398	1.4187	0.0010667	2.4615	0.0018507	751.868036492733	13.983	0.062056	13.983	13.939	14.001	0	408	25	1.0518390438467	0.0160759277723759	1.0518390438467	425.165210208388	0	6.49807140229456						126	8	3	NaN	NaN	NaN	0.019478	1	18568	38.1	35.429	1	29637			624	3065	538	540	624	624		
AGFLDNFR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGFLDNFR_			1	0	0	P56557	P56557	P56557	TMEM50B	Transmembrane protein 50B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.243067	980.47158	-1.3225	-0.00064964	1.2927	0.00063505	-0.02971	-1.4595E-05	491.24362917222	17.628	0.079787	17.628	17.601	17.681	0	708	19	0.849494101904619	0.0122267289803111	0.849494101904619	345.036927731344	0	4.96610040506675						68	10	2	NaN	NaN	NaN	0.0080584	1	3850	51.43	44.08	1	12527			625	1288	539	541	625	625		
AGFSGGMVVDYPNSAK	16	Unmodified	_AGFSGGMVVDYPNSAK_			0	0	0	O43709	O43709	O43709	WBSCR22	Probable 18S rRNA (guanine-N(7))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.377223	1598.73989	1.8376	0.0014708	-0.61071	-0.0004888	1.2269	0.00098201	800.377353576388	10.197	0.2128	10.197	10.081	10.294	0	408	46	1.0518390438467	0.0301361332726353	1.0518390438467	424.9295166262	0	12.1746122844913						450	25	3	NaN	NaN	NaN	0.00021182	1	21531	80.815	58.811	1	117410			626	222	540	542	626	626		
AGGAAVVITEPEHTK	15	Unmodified	_AGGAAVVITEPEHTK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.39373	1478.77291	2.9956	0.0022179	-2.5515	-0.0018891	0.44408	0.00032879	740.391781077663	4.9997	0.24819	4.9997	4.9465	5.1947	0	375	55	1.07392668217569	0.036130958221537	1.07392668217569	434.154807735215	0	14.6066109356563						624	29	5	NaN	NaN	NaN	3.9743E-08	1	17872	119.55	109.46	1	269520			627	3151	541	543	627	627		
AGGAGVPAFYTPTGYGTLVQEGGSPIK	27	Unmodified	_AGGAGVPAFYTPTGYGTLVQEGGSPIK_			0	0	0	P55809	P55809	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.774499	2594.30167	1.7679	0.0015306	0.56242	0.00048693	2.3304	0.0020176	866.44251895145	15.349	0.079814	15.349	15.313	15.393	0	357	31	1.08596037261705	0.020047861495702	1.08596037261705	655.896190767498	0	12.1084676012412						227	10	4	NaN	NaN	NaN	2.9998E-06	1	37224	64.56	54.308	1	47079			628	1279	542	544	628	628		
AGGDATDSSQTALDNK	16	Unmodified	_AGGDATDSSQTALDNK_			0	0	0	O75122	O75122	O75122	CLASP2	CLIP-associating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.850081	1549.68561	2.6118	0.0020264	-1.3102	-0.0010165	1.3016	0.0010098	775.848978465864	3.2351	0.079825	3.2351	3.2084	3.2883	0	462	28	1.01562323939346	0.0181291645901349	1.01562323939346	410.410326371294	0	7.32594141969383						108	10	2	NaN	NaN	NaN	2.4538E-06	1	20027	82.437	74.472	1	21514			629	302	543	545	629	629		
AGGEAGVTLGQPHLSR	16	Unmodified	_AGGEAGVTLGQPHLSR_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.407703	1548.80085	2.7655	0.0021444	-1.629	-0.0012631	1.1366	0.00088132	775.406720389864	6.4185	0.070936	6.4185	6.3919	6.4629	-8.8818E-16	333	43	1.10198982404297	0.0280476801589677	1.10198982404297	445.313059870694	0	11.3340413870986						208	9	3	NaN	NaN	NaN	2.0607E-08	1	20008	121.69	118.19	1	45418			630	1027	544	546	630	630		
AGGEAGVTLGQPHLSR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGGEAGVTLGQPHLSR_			1	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.412985	1590.81142	2.5426	0.002025	-0.48949	-0.00038983	2.0531	0.0016351	796.41265523977	9.044	0.23054	9.044	8.9908	9.2213	0	300	79	1.12400150285141	0.0520168956749294	1.12400150285141	454.101663091189	0	21.0150598330196						1027	27	5	NaN	NaN	NaN	5.4059E-34	1	21301	237.27	209.68	1	504610			631	1027	544	547	631	631		
AGGEELDEGVAK	12	Unmodified	_AGGEELDEGVAK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.78295	1173.55135	1.6966	0.00099726	-0.98781	-0.00058062	0.70883	0.00041664	587.782530098466	4.2637	0.15962	4.2637	4.2283	4.3879	0	651	34	0.888155670855968	0.022351963978809	0.888155670855968	359.917809684577	0	9.0579502911333						225	19	3	NaN	NaN	NaN	0.019383	1	8693	51.531	45.268	1	66501			632	1927	545	548	632	632		
AGGGAGDPGLGAAAAPAPETR	21	Unmodified	_AGGGAGDPGLGAAAAPAPETR_			0	0	0	Q13637	Q13637	Q13637	RAB32	Ras-related protein Rab-32	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.437189	1762.85982	3.1026	0.0027379	0.33006	0.00029126	3.4327	0.0030291	882.940056457835	6.3653	0.12413	6.3653	6.2944	6.4185	0	336	31	1.09998710857178	0.020031295382638	1.09998710857178	444.025204224217	0	8.08591296556182						202	15	3	NaN	NaN	NaN	1.4501E-07	1	26223	90.376	89.494	1	46909			633	1699	546	549	633	633		
AGGIETIANEFSDR	14	Unmodified	_AGGIETIANEFSDR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.357345	1478.70014	2.0925	0.0015492	-0.082905	-6.1379E-05	2.0096	0.0014878	740.357523058953	12.946	0.2483	12.946	12.857	13.105	0	462	46	1.01562323939346	0.0302236288211217	1.01562323939346	410.584736012285	0	12.2184686008805						729	29	5	NaN	NaN	NaN	2.5577E-11	1	17849	163.59	125.84	1	634530			634	2415	547	550	634	634		
AGGIETIANEYSDR	14	Unmodified	_AGGIETIANEYSDR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.354802	1494.69505	1.527	0.0011428	1.4699	0.0011	2.9969	0.0022427	748.356385467136	9.5494	0.2394	9.5494	9.4785	9.7179	0	471	73	1.00957851518677	0.0483344518917967	1.00957851518677	408.100542130392	0	19.5381693685987						1015	28	5	NaN	NaN	NaN	4.8326E-24	1	18371	228.28	219.02	1	648220			635	955	548	551	635	635		
AGGSASAMLQPLLDNQVGFK	20	Unmodified	_AGGSASAMLQPLLDNQVGFK_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.678813	2003.01461	-0.21863	-0.00014619	-1.867	-0.0012484	-2.0856	-0.0013946	669.012299812974	16.431	0.097541	16.431	16.395	16.493	0	600	31	0.922661313351899	0.0202735302015807	0.922661313351899	558.142812208592	0	12.2640073842464						309	12	5	NaN	NaN	NaN	0.018948	1	31687	69.327	63.939	1	89102			636	781	549	552	636	636		
AGGSASAMLQPLLDNQVGFK	20	Unmodified	_AGGSASAMLQPLLDNQVGFK_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.51458	2003.01461	1.2397	0.0012428	0.23677	0.00023737	1.4765	0.0014802	1002.51580211018	16.44	0.28372	16.44	16.298	16.581	0	174	88	1.20774045859593	0.0577046463767035	1.20774045859593	487.064948907022	0	23.2714822453175						1250	33	5	NaN	NaN	NaN	7.3399E-06	1	31689	94.63	80.236	1	727330			637	781	549	552	637	637		
AGGSPAPGPETPAISPSK	18	Unmodified	_AGGSPAPGPETPAISPSK_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.915027	1619.8155	2.9033	0.0023543	-6.8373	-0.0055445	-3.9341	-0.0031902	811.410129001995	6.1259	0.10639	6.1259	6.0815	6.1879	0	387	37	1.06589869032374	0.0240939446089616	1.06589869032374	430.561332934952	0	9.73255807580057						301	13	4	NaN	NaN	NaN	0.035662	1	22182	35.246	31.263	1	62944			638	946	550	553	638	638		
AGIATHFVDSEK	12	Unmodified	_AGIATHFVDSEK_			0	0	0	Q6NVY1	Q6NVY1	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.822409	1273.63027	2.2527	0.0014368	-1.1631	-0.00074184	1.0896	0.00069499	637.821558246809	5.6471	0.18625	5.6471	5.5583	5.7445	0	501	31	0.98941132619024	0.0201811333938051	0.98941132619024	400.584596850949	0	8.17076879004537						247	22	3	NaN	NaN	NaN	4.8411E-05	1	11591	110.88	92.548	1	71117			639	2048	551	554	639	639		
AGIEGPLLASDVGR	14	Unmodified	_AGIEGPLLASDVGR_			0	0	0	P18583	P18583	P18583	SON	Protein SON	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.869891	1353.72523	1.3716	0.00092979	-1.5464	-0.0010483	-0.17479	-0.00011849	678.370106122628	11.376	0.22174	11.376	11.234	11.456	0	507	43	0.985374541851584	0.0282692223025561	0.985374541851584	398.696905528745	0	11.438139484053						447	26	4	NaN	NaN	NaN	0.0061935	1	14019	40.861	35.365	1	122910			640	754	552	555	640	640		
AGIIQDTWHK	10	Unmodified	_AGIIQDTWHK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.208495	1167.60366	-1.5392	-0.00060059	-1.5212	-0.00059358	-3.0604	-0.0011942	390.207900582207	6.5427	0.1064	6.5427	6.5072	6.6136	0	891	19	0.724677416575734	0.0123292940485275	0.724677416575734	440.526016793551	0	7.49488623881604						84	13	2	NaN	NaN	NaN	0.022707	1	8547	51.864	36.282	1	19184			641	3158	553	556	641	641		
AGIIQDTWHK	10	Unmodified	_AGIIQDTWHK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.809105	1167.60366	1.1317	0.00066182	2.6031	0.0015223	3.7348	0.0021841	584.810668058366	6.5338	0.22169	6.5338	6.454	6.6757	0	609	46	0.916577990479294	0.0304250551653156	0.916577990479294	371.45768671898	0	12.3302334633801						316	26	3	NaN	NaN	NaN	0.0099301	1	8551	54.436	7.0871	1	101300			642	3158	553	556	642	642		
AGIISTVEVLK	11	Unmodified	_AGIISTVEVLK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.344989	1128.67542	0.9776	0.00055268	-2.3924	-0.0013526	-1.4149	-0.00079988	565.343368486595	12.68	0.1685	12.68	12.618	12.786	0	609	46	0.916577990479294	0.0304208382695857	0.916577990479294	371.607248186473	0	12.3334883821235						385	20	4	NaN	NaN	NaN	0.004415	1	7505	51.872	30.598	1	171630			643	1277	554	557	643	643		
AGILFEDIFDVK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGILFEDIFDVK_			1	0	0	P52434	P52434	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.871568	1407.72858	0.18927	0.00013341	1.0812	0.00076209	1.2704	0.0008955	704.872460582739	20.332	0.017729	20.332	20.332	20.35	0	459	46	1.01763759082241	0.030219453730939	1.01763759082241	411.591305057856	0	12.2224891370225						93	3	4	NaN	NaN	NaN	0.0022677	1	15704	50.297	44.801	1	24883			644	1211	555	558	644	644		
AGINQNMDAVTEELQAK	17	Unmodified	_AGINQNMDAVTEELQAK_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.446365	1830.87818	1.3466	0.0012341	0.62233	0.00057033	1.969	0.0018044	916.44716447498	12.041	0.088676	12.041	12.006	12.094	0	270	34	1.14398322290989	0.021963270168132	1.14398322290989	461.650952967064	0	8.8632109285661						137	11	2	NaN	NaN	NaN	0.071029	1	28001	13.345	12.606	1	34613			645	3311	556	559	645	645		
AGLELLSDQGYR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGLELLSDQGYR_			1	0	0	Q9NPD3	Q9NPD3	Q9NPD3	EXOSC4	Exosome complex component RRP41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.346249	1362.67794	0.71859	0.00049033	0.90149	0.00061513	1.6201	0.0011055	682.346167586624	16.528	0.15958	16.528	16.475	16.635	0	459	43	1.01763759082241	0.0282028744341156	1.01763759082241	411.723652325335	0	11.4105361012685						402	19	4	NaN	NaN	NaN	1.8764E-05	1	14278	107.08	93.083	1	139860			646	2985	557	560	646	646		
AGLESGAEPGDGDSDTTK	18	Unmodified	_AGLESGAEPGDGDSDTTK_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.87121	1705.72787	3.5024	0.0029906	-2.6803	-0.0022887	0.82203	0.00070191	853.868910481471	3.9888	0.15076	3.9888	3.9622	4.113	0	411	43	1.04982941439551	0.0281367598695683	1.04982941439551	423.88910298266	0	11.360765604779						371	18	4	NaN	NaN	NaN	9.9649E-07	1	24641	119.79	92.201	1	75695			647	287	558	561	647	647		
AGLGSGLSLSGLVHPELSR	19	Unmodified	_AGLGSGLSLSGLVHPELSR_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.34253	1849.00576	0.51818	0.00031989	0.1208	7.4577E-05	0.63898	0.00039447	617.677007040387	14.71	0.15078	14.71	14.675	14.826	0	564	61	0.946969335010767	0.0404629208582415	0.946969335010767	573.175319339214	0	24.4911284102524						495	18	5	NaN	NaN	NaN	0.00099704	1	28473	74.733	65.576	1	216220			648	1145	559	562	648	648		
AGLGSGLSLSGLVHPELSR	19	Unmodified	_AGLGSGLSLSGLVHPELSR_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.510157	1849.00576	0.60613	0.00056098	0.468	0.00043314	1.0741	0.00099412	926.012326813185	14.71	0.11534	14.71	14.675	14.79	0	99	40	1.25735632164274	0.0257613660817553	1.25735632164274	507.36491983685	0	10.3951546685518						386	14	4	NaN	NaN	NaN	1.1503E-10	1	28474	108.34	88.002	1	109380			649	1145	559	562	649	649		
AGLLEPEVFHLNPAK	15	Unmodified	_AGLLEPEVFHLNPAK_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.634874	1633.88279	-0.05124	-2.7959E-05	0.02325	1.2686E-05	-0.027991	-1.5273E-05	545.635110793772	13.345	0.10645	13.345	13.292	13.398	0	645	25	0.892219381832517	0.0162525902140942	0.892219381832517	540.565128317599	0	9.84688709242175						214	13	3	NaN	NaN	NaN	0.0026213	1	22603	35.845	31.318	1	56039			650	826	560	563	650	650		
AGLLHNILPSQSTDLHHSVGTELLSLVYK	29	Unmodified	_AGLLHNILPSQSTDLHHSVGTELLSLVYK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	786.427839	3141.68225	1.0616	0.00083484	0.39503	0.00031066	1.4566	0.0011455	786.678809780277	17.504	0.19506	17.504	17.433	17.628	0	477	37	1.0055473068722	0.0241905964234823	1.0055473068722	809.017788537028	0	19.4626574882814						716	23	7	NaN	NaN	NaN	7.5156E-11	1	38407	149.62	146.26	1	311480			651	1465	561	564	651	651		
AGLLHNILPSQSTDLHHSVGTELLSLVYK	29	Unmodified	_AGLLHNILPSQSTDLHHSVGTELLSLVYK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1048.23469	3141.68225	1.8038	0.0018908	0.013667	1.4326E-05	1.8174	0.0019051	1048.56910374047	17.504	0.088684	17.504	17.459	17.548	0	285	37	1.13399579921816	0.0239846644495882	1.13399579921816	684.272186297824	0	14.472750950096						211	11	4	NaN	NaN	NaN	0.065782	1	38408	2.2494	1.8993	1	37608			652	1465	561	564	652	652		
AGLLQVYIHTQK	12	Unmodified	_AGLLQVYIHTQK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.597871	1369.77178	-1.081	-0.00049465	-1.9158	-0.00087666	-2.9968	-0.0013713	457.596882955699	9.8864	0.09755	9.8864	9.8332	9.9307	0	870	22	0.739054571787983	0.0143691370425433	0.739054571787983	448.491976658205	0	8.71984684363957						108	12	2	NaN	NaN	NaN	0.00033577	1	14497	53.517	28.696	1	28762			653	2450	562	565	653	653		
AGLLQVYIHTQK	12	Unmodified	_AGLLQVYIHTQK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.893169	1369.77178	1.8939	0.001299	-0.15355	-0.00010532	1.7403	0.0011937	685.892841967399	9.8864	0.079794	9.8864	9.842	9.9218	0	405	22	1.05384839605172	0.0140654662382922	1.05384839605172	426.351927746201	0	5.69041872418495						150	10	3	NaN	NaN	NaN	0.0018256	1	14498	64.064	46.595	1	32928			654	2450	562	565	654	654		
AGLLTEQAPGDTLTAVESK	19	Unmodified	_AGLLTEQAPGDTLTAVESK_			0	0	0	Q9H267	Q9H267	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.996745	1899.97894	1.8001	0.0017119	-1.8939	-0.0018011	-0.093797	-8.9201E-05	951.496174765938	12.423	0.11526	12.423	12.378	12.493	0	225	46	1.17390432875292	0.0298923356935374	1.17390432875292	473.59597290781	0	12.0596623238515						313	14	4	NaN	NaN	NaN	6.0419E-07	1	29597	86.729	66.838	1	72257			655	2861	563	566	655	655		
AGLLVLAVLSDGAGDHIR	18	Unmodified	_AGLLVLAVLSDGAGDHIR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.003737	1775.98938	-0.73508	-0.0004359	-0.81229	-0.00048169	-1.5474	-0.0009176	593.003145403249	17.539	0.1153	17.539	17.486	17.601	0	669	25	0.875957769340875	0.0162729009073457	0.875957769340875	530.356011895683	0	9.85256496290629						227	14	4	NaN	NaN	NaN	5.494E-05	1	26582	75.5	70.406	1	61407			656	2356	564	567	656	656		
AGLNCSTENMPIK	13	Unmodified	_AGLNCSTENMPIK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.839419	1433.66428	2.1578	0.001549	0.98525	0.00070725	3.1431	0.0022562	717.84084768439	7.2521	0.25713	7.2521	7.1191	7.3762	0	489	61	0.997481546940468	0.0403343924406536	0.997481546940468	403.368031423032	0	16.3106821648316						757	30	3	NaN	NaN	NaN	0.00085579	1	16493	51.531	48.86	1	368440			657	527	565	568	657	657		
AGLNEMVEYITHSR	14	Unmodified	_AGLNEMVEYITHSR_			0	0	0	Q14738	Q14738	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.599723	1618.77734	-1.4074	-0.00076087	-0.45545	-0.00024622	-1.8629	-0.0010071	540.599628517662	14.914	0.10641	14.914	14.87	14.976	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	499.892702975399	0	9.89289558212198						240	13	4	NaN	NaN	NaN	0.0019615	1	22147	41.317	39.607	1	68485			658	1772	566	569	658	658		
AGLPCQDLEFVQFHPTGIYGAGCLITEGCR	30	Unmodified	_AGLPCQDLEFVQFHPTGIYGAGCLITEGCR_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1122.86166	3365.56314	1.8628	0.0020916	0.078477	8.8119E-05	1.9413	0.0021798	1123.53039044911	17.583	0.13299	17.583	17.548	17.681	0	258	40	1.15196821829984	0.0259458875864387	1.15196821829984	694.913063065854	0	15.6515917108067						588	16	7	NaN	NaN	NaN	0.012978	1	38586	27.18	25.543	1	203890			659	919	567	570	659	659		
AGLPGFYDPCVGEEK	15	Unmodified	_AGLPGFYDPCVGEEK_			0	0	0	Q9NVH1	Q9NVH1	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.877056	1637.73956	1.4866	0.0012189	6.3966	0.0052444	7.8832	0.0064633	820.384142112765	12.316	0.13304	12.316	12.219	12.352	0	366	49	1.07994477139643	0.0321031230176227	1.07994477139643	436.194602619064	0	12.9665973283023						285	16	4	NaN	NaN	NaN	0.003733	1	22701	28.228	26.244	1	102640			660	3065	568	571	660	660		
AGLQFPVGR	9	Unmodified	_AGLQFPVGR_			0	0	0	Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q93077;Q7L7L0;P04908;Q96KK5;P20671;Q71UI9;P0C0S5;P16104;Q96QV6;Q8IUE6	Q6FI13;Q71UI9;P16104	Q71UI9	HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AH;HIST1H2AD;H2AFV;H2AFZ;H2AFX;HIST1H2AA;HIST2H2AB	Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2A.V;Histone H2A.Z;Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.769252	943.52395	-0.95863	-0.00045321	-1.425	-0.00067371	-2.3837	-0.0011269	472.768587340056	9.6913	0.21281	9.6913	9.6381	9.8509	0	777	61	0.802556497112065	0.0408635813635408	0.802556497112065	326.148919309523	0	16.6064482049476						628	25	4	NaN	NaN	NaN	7.5624E-05	1	3128	134.85	97.243	1	304640			661	616;521;723	569	572	661	661		
AGLSQSLFER	10	Unmodified	_AGLSQSLFER_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.293288	1106.57202	0.45882	0.00025432	-1.0108	-0.0005603	-0.55201	-0.00030597	554.292946058217	9.8864	0.14188	9.8864	9.8243	9.9662	0	663	46	0.880024865079826	0.0304926449170472	0.880024865079826	356.873529797107	0	12.3655799468909						333	17	3	NaN	NaN	NaN	7.1859E-05	1	6897	90.761	41.436	1	107590			662	2442	570	573	662	662		
AGLTHLITMDLHQK	14	Unmodified	_AGLTHLITMDLHQK_			0	0	0	O60256	O60256	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.620459	1576.83955	-1.0471	-0.00055142	0.35887	0.00018899	-0.68821	-0.00036242	526.620797570801	9.4164	0.088654	9.4164	9.3721	9.4608	0	729	28	0.835224628594324	0.0183566683857203	0.835224628594324	506.187648955572	0	11.1250536618671						218	11	4	NaN	NaN	NaN	6.4041E-05	1	20883	84.309	0	1	69901			663	250	571	574	663	663		
AGLTLFVGR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGLTLFVGR_			1	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.284734	974.554916	-1.0189	-0.0004975	0.68847	0.00033617	-0.3304	-0.00016133	488.284852251248	18.018	0.11529	18.018	17.974	18.089	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	350.856554952258	0	7.44201984750129						208	14	3	NaN	NaN	NaN	0.00013148	1	3735	101.41	77.837	1	59243			664	3078	572	575	664	664		
AGLVDDFEK	9	Unmodified	_AGLVDDFEK_			0	0	0	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.248015	992.481476	-0.10774	-5.3576E-05	-0.31631	-0.00015729	-0.42406	-0.00021086	497.247864941834	8.8931	0.29279	8.8931	8.7955	9.0883	0	714	52	0.845418525735192	0.0346400029303776	0.845418525735192	343.324084335929	0	14.0672896623878						842	34	5	NaN	NaN	NaN	0.0011344	1	4109	94.806	60.993	1	342210			665	372	573	576	665	665		
AGLVGPEFHEK	11	Unmodified	_AGLVGPEFHEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	395.208384	1182.60332	-1.4779	-0.00058409	0.084168	3.3264E-05	-1.3938	-0.00055083	395.208272922532	5.8066	0.1596	5.8066	5.7445	5.9041	0	867	19	0.741107305531458	0.0123155442994251	0.741107305531458	450.447008486043	0	7.48542086435793						145	19	3	NaN	NaN	NaN	0.030123	1	8941	26.947	24.348	1	28579			666	1816	574	577	666	666		
AGLVGPEFHEK	11	Unmodified	_AGLVGPEFHEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.308938	1182.60332	1.7373	0.001029	0.66804	0.00039569	2.4054	0.0014247	592.30925622187	5.8066	0.23939	5.8066	5.7002	5.9396	0	582	61	0.934820374997243	0.0404909431066049	0.934820374997243	378.794602487751	0	16.4071634601095						662	28	4	NaN	NaN	NaN	0.0059869	1	8943	64.064	38.811	1	220300			667	1816	574	577	667	667		
AGMAAVASPTGNCDLER	17	Unmodified	_AGMAAVASPTGNCDLER_			0	0	0	Q6P1M0	Q6P1M0	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.393078	1718.7716	2.6776	0.0023038	-0.059119	-5.0866E-05	2.6185	0.0022529	860.393298930304	7.4915	0.071016	7.4915	7.456	7.527	0	348	61	1.09197348738011	0.0401123188084369	1.09197348738011	440.878615127749	0	16.1951400562443						265	9	2	NaN	NaN	NaN	0.0011349	1	25019	33.751	28.935	1	58983			668	2059	575	578	668	668		
AGMSAEQAQGLLEK	14	Unmodified	_AGMSAEQAQGLLEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.858666	1431.70278	2.1846	0.001566	-0.58254	-0.0004176	1.602	0.0011484	716.858716657916	8.9908	0.27504	8.9908	8.8842	9.1592	0	435	70	1.03374239103424	0.0463109185444219	1.03374239103424	418.036904977464	0	18.7277538610027						968	32	5	NaN	NaN	NaN	9.8603E-34	1	16447	273.02	205.52	1	424750			669	3345	576	579	669	669		
AGNFYVPAEPK	11	Unmodified	_AGNFYVPAEPK_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.803488	1191.59242	1.5695	0.00093666	0.92213	0.00055033	2.4916	0.001487	596.804528204307	7.9438	0.58552	7.9438	7.7664	8.352	0	609	118	0.916577990479294	0.079061424363583	0.916577990479294	371.370372928342	0	32.0333577231069						1743	67	5	NaN	NaN	NaN	0.0064245	1	9206	54.584	27.637	1	2042100			670	752	577	580	670	670		
AGNILLNTEGHAK	13	Unmodified	_AGNILLNTEGHAK_			0	0	0	Q13043;Q13188	Q13043;Q13188	Q13043	STK4;STK3	Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.362233	1336.70991	1.182	0.00079117	-2.1377	-0.0014309	-0.95568	-0.0006397	669.361282790328	5.2745	0.07985	5.2745	5.2479	5.3278	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	402.014851195103	0	6.53149850635413						154	10	3	NaN	NaN	NaN	0.00047542	1	13503	51.531	45.268	1	34506			671	1620;1640	578	581	671	671		
AGNLGGGVVTIER	13	Unmodified	_AGNLGGGVVTIER_			0	0	0	P35268	P35268	P35268	RPL22	60S ribosomal protein L22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.843676	1241.6728	2.195	0.001365	-0.58099	-0.00036129	1.614	0.0010037	621.843493959786	8.0148	0.26613	8.0148	7.9172	8.1833	0	540	82	0.963152256458504	0.0545456492666851	0.963152256458504	390.060684512298	0	22.0900830034525						1321	31	6	NaN	NaN	NaN	3.0008E-11	1	10677	165.39	131.96	1	1010200			672	967	579	582	672	672		
AGPESDAQYQFTGIK	15	Unmodified	_AGPESDAQYQFTGIK_			0	0	0	Q96IX5	Q96IX5	Q96IX5	USMG5	Up-regulated during skeletal muscle growth protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.386102	1610.75765	2.2502	0.0018145	1.6962	0.0013678	3.9464	0.0031823	806.387555936574	9.2745	0.40792	9.2745	9.1947	9.6026	0	402	94	1.05585747106793	0.0622642162087288	1.05585747106793	426.525566721669	0	25.152334318426						1426	47	5	NaN	NaN	NaN	4.1046E-33	1	21913	229.4	195.2	1	956330			673	2562	580	583	673	673		
AGPFDEFQIATMLK	14	Unmodified	_AGPFDEFQIATMLK_			0	0	0	Q9P289	Q9P289	Q9P289	STK26	Serine/threonine-protein kinase 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.394884	1566.77522	1.135	0.00089031	-0.32268	-0.00025311	0.81235	0.0006372	784.39553481516	18.497	0.26605	18.497	18.364	18.63	0	390	28	1.06389100039157	0.0180717032280036	1.06389100039157	429.873654255499	0	7.30201599823999						560	31	4	NaN	NaN	NaN	9.0029E-06	1	20555	86.838	79.698	1	135420			674	3155	581	584	674	674		
AGPGTLSVTIEGPSK	15	Unmodified	_AGPGTLSVTIEGPSK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.382831	1412.75111	1.5702	0.0011107	-2.6541	-0.0018774	-1.0839	-0.0007667	707.380235287548	9.3455	0.31039	9.3455	9.2125	9.5228	0	471	49	1.00957851518677	0.0322407656624188	1.00957851518677	408.317642702962	0	13.0395736796975						658	34	4	NaN	NaN	NaN	4.6471E-12	1	15860	166.71	133.29	1	502430			675	326	582	585	675	675		
AGPGVEDLWR	10	Unmodified	_AGPGVEDLWR_			0	0	0	Q9UNI6	Q9UNI6	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.28018	1098.54581	-0.04189	-2.3051E-05	-0.66689	-0.00036697	-0.70878	-0.00039003	550.279958998267	11.163	0.14189	11.163	11.101	11.243	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	356.905599852721	0	6.59694043607192						264	17	3	NaN	NaN	NaN	0.0099301	1	6666	46.447	37.684	1	67506			676	3297	583	586	676	676		
AGPIWDLR	8	Unmodified	_AGPIWDLR_			0	0	0	O43390;O60506	O43390;O60506	O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.255977	926.497401	-1.1069	-0.0005139	-1.5717	-0.00072966	-2.6786	-0.0012436	464.25555295062	11.474	0.4257	11.474	11.35	11.775	0	756	40	0.816857749704129	0.026548391943247	0.816857749704129	332.048338249441	0	10.7917803695233						860	49	4	NaN	NaN	NaN	0.016891	1	2809	58.286	37.627	1	382950			677	263;196	584	587	677	677		
AGPNASIISLK	11	Unmodified	_AGPNASIISLK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.813856	1069.61316	1.0281	0.00055086	-0.53228	-0.0002852	0.49581	0.00026566	535.813851844975	9.0972	0.12414	9.0972	9.0617	9.1858	0	609	37	0.916577990479294	0.0243383549190614	0.916577990479294	371.854736588725	0	9.87404525467377						259	15	3	NaN	NaN	NaN	0.0024846	1	5950	57.888	32.634	1	91760			678	2841	585	588	678	678		
AGQLTSEEDTLTLVTADHSHVFSFGGYTLR	30	Unmodified	_AGQLTSEEDTLTLVTADHSHVFSFGGYTLR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1084.86511	3251.57349	0.87872	0.00095329	-0.032887	-3.5677E-05	0.84583	0.00091761	1085.19992209195	16.555	0.062068	16.555	16.528	16.59	0	219	28	1.17788915118882	0.0179255454970533	1.17788915118882	710.652219335295	0	10.8149639356299						160	8	4	NaN	NaN	NaN	0.027002	1	38507	11.29	11.258	1	28611			679	613	586	589	679	679		
AGQLTSEEDTLTLVTADHSHVFSFGGYTLR	30	Unmodified	_AGQLTSEEDTLTLVTADHSHVFSFGGYTLR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	813.900648	3251.57349	1.41	0.0011476	0.018791	1.5294E-05	1.4288	0.0011629	814.151370669695	16.555	0.16848	16.555	16.502	16.67	0	438	76	1.03173026378327	0.0502962745765683	1.03173026378327	829.959743779426	0	40.4600743294639						1119	20	7	NaN	NaN	NaN	5.1169E-22	1	38508	165.87	158.86	1	446290			680	613	586	589	680	680		
AGQVFLEELGNHK	13	Unmodified	_AGQVFLEELGNHK_			0	0	0	P09543	P09543	P09543	CNP	2,3-cyclic-nucleotide 3-phosphodiesterase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.252652	1440.73613	-1.2751	-0.00061366	-0.67833	-0.00032645	-1.9535	-0.00094011	481.252451129316	9.6736	0.15073	9.6736	9.6204	9.7711	0	777	31	0.802556497112065	0.020440313348464	0.802556497112065	486.788409258325	0	12.3980151621041						273	18	4	NaN	NaN	NaN	0.00034279	1	16697	64.064	58.198	1	82577			681	605	587	590	681	681		
AGQVFLEELGNHK	13	Unmodified	_AGQVFLEELGNHK_			0	0	0	P09543	P09543	P09543	CNP	2,3-cyclic-nucleotide 3-phosphodiesterase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.37534	1440.73613	2.1788	0.0015717	0.92053	0.00066405	3.0994	0.0022358	721.375914084478	9.6736	0.14187	9.6736	9.6292	9.7711	0	417	31	1.04580932352505	0.0201032305459359	1.04580932352505	422.891292694722	0	8.12909290601408						291	17	3	NaN	NaN	NaN	0.0004692	1	16698	87.942	73.947	1	98433			682	605	587	590	682	682		
AGQVVTIWAAGAGATHSPPTDLVWK	25	Unmodified	_AGQVVTIWAAGAGATHSPPTDLVWK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	845.111446	2532.31251	1.3528	0.0011433	-0.11434	-9.6627E-05	1.2384	0.0010466	845.445583028502	15.287	0.36366	15.287	15.216	15.579	0	495	157	0.993446994398923	0.104724911483109	0.993446994398923	600.098411579278	0	63.2597948235962						3243	42	5	NaN	NaN	NaN	4.0368E-18	1	36968	160.09	145.43	1	833370			683	493	588	591	683	683		
AGSDGESIGNCPFSQR	16	Unmodified	_AGSDGESIGNCPFSQR_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.365375	1680.7162	2.405	0.0020235	-0.80684	-0.00067885	1.5981	0.0013446	841.365279172446	6.8175	0.11524	6.8175	6.7732	6.8885	0	396	46	1.05987478976334	0.0301236649306122	1.05987478976334	427.996438777576	0	12.1644758774853						348	14	4	NaN	NaN	NaN	3.3763E-06	1	23927	87.573	86.896	1	82378			684	3454	589	592	684	684		
AGSNMLLIGVHGPTTPCEEVSMK	23	Unmodified	_AGSNMLLIGVHGPTTPCEEVSMK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	810.060489	2427.15964	1.3251	0.0010734	-0.058618	-4.7484E-05	1.2665	0.001026	810.394904441087	12.431	0.10641	12.431	12.405	12.511	0	549	34	0.957085760909907	0.0222468989208282	0.957085760909907	578.27083576477	0	13.441567472377						427	13	6	NaN	NaN	NaN	1.3719E-09	1	36476	85.443	83.495	1	104880			685	326	590	593	685	685		
AGSSTPGDAPPAVAEVQGR	19	Unmodified	_AGSSTPGDAPPAVAEVQGR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.937022	1765.85949	3.1807	0.0028115	-4.4352	-0.0039204	-1.2545	-0.0011089	883.933167449082	6.7998	0.16851	6.7998	6.7289	6.8974	0	351	64	1.08996939197032	0.0420976254605598	1.08996939197032	439.975596629376	0	16.9930715625032						677	20	3	NaN	NaN	NaN	0.0012555	1	26293	67.838	61.316	1	154750			686	2149	591	594	686	686		
AGSVELLGAMAYCAPK	16	Unmodified	_AGSVELLGAMAYCAPK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.404926	1636.7953	1.1562	0.00094742	0.48657	0.0003987	1.6428	0.0013461	819.405410410174	13.682	0.079782	13.682	13.646	13.726	0	186	31	1.1997861197946	0.0198913087124573	1.1997861197946	484.601437099458	0	8.03422929204737						231	10	4	NaN	NaN	NaN	6.6698E-08	1	22685	86.243	71.787	1	56016			687	2420	592	595	687	687		
AGSVSLDSVLADVR	14	Unmodified	_AGSVSLDSVLADVR_			0	0	0	O95466	O95466	O95466	FMNL1	Formin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.87263	1387.73071	0.79685	0.00055371	1.4406	0.0010011	2.2375	0.0015548	694.873828421865	15.012	0.14187	15.012	14.95	15.092	0	462	61	1.01562323939346	0.0402842653635953	1.01562323939346	410.83416405752	0	16.2955630034695						429	17	4	NaN	NaN	NaN	0.00028835	1	15079	62.705	51.349	1	99172			688	437	593	596	688	688		
AGTDLLNFLSSFIDPK	16	Unmodified	_AGTDLLNFLSSFIDPK_			0	0	0	CON__P81644	CON__P81644	CON__P81644			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.456527	1736.8985	0.82358	0.00071607	0.42759	0.00037177	1.2512	0.0010878	869.456936149649	20.244	0.0088562	20.244	20.244	20.252	0	258	73	1.15196821829984	0.0479429623151366	1.15196821829984	465.062340309023	0	19.3551053765456						130	2	4	NaN	NaN	NaN	0.00019601	1	25525	73.891	66.315	1	24637		+	689	34	594	597	689	689		
AGTFQAFEQFGQQLLAHGHYASPEIK	26	Unmodified	_AGTFQAFEQFGQQLLAHGHYASPEIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	719.609508	2874.40893	0.56274	0.00040495	-0.23348	-0.00016802	0.32925	0.00023693	719.859963411434	17.894	0.12413	17.894	17.841	17.965	0	516	52	0.979317271586824	0.0343435388719882	0.979317271586824	788.237109429662	0	27.6425756937558						630	15	6	NaN	NaN	NaN	8.2479E-10	1	38040	99.127	96.06	1	192170			690	1703	595	598	690	690		
AGTFQAFEQFGQQLLAHGHYASPEIK	26	Unmodified	_AGTFQAFEQFGQQLLAHGHYASPEIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	959.143585	2874.40893	1.2001	0.0011511	1.0196	0.00097791	2.2197	0.002129	959.478814981238	17.894	0.079777	17.894	17.867	17.947	0	315	37	1.11400032671325	0.0240143942796327	1.11400032671325	672.482171220442	0	14.4966313011398						260	10	4	NaN	NaN	NaN	9.2426E-10	1	38041	58.691	57.85	1	57720			691	1703	595	598	691	691		
AGTGENAPWVVEDELVK	17	Unmodified	_AGTGENAPWVVEDELVK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.451973	1812.88939	2.0456	0.0018563	-0.15116	-0.00013717	1.8944	0.0017191	907.451452185364	13.93	0.11526	13.93	13.886	14.001	0	288	43	1.13199748998575	0.0279898124125677	1.13199748998575	456.848228222739	0	11.296046433044						350	14	3	NaN	NaN	NaN	0.0015881	1	27553	63.79	58.403	1	129130			692	3238	596	599	692	692		
AGTGVDNVDLEAATR	15	Unmodified	_AGTGVDNVDLEAATR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.868076	1487.7216	2.0358	0.0015164	0.62245	0.00046365	2.6582	0.00198	744.868861060208	8.1124	0.36371	8.1124	7.9438	8.3076	0	447	70	1.02569221487577	0.0463237128819054	1.02569221487577	414.631992763177	0	18.7261764356278						1018	42	4	NaN	NaN	NaN	3.1948E-17	1	18164	211.52	192.2	1	780220			693	189	597	600	693	693		
AGTLIMALHDSSDYLLESAK	20	Unmodified	_AGTLIMALHDSSDYLLESAK_			0	0	0	Q96G23	Q96G23	Q96G23	CERS2	Ceramide synthase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.36115	2134.06162	0.20765	0.00014792	-4.412	-0.0031429	-4.2043	-0.002995	712.356494344261	16.688	0.13304	16.688	16.635	16.768	0	525	37	0.973257487423603	0.0242341119852805	0.973257487423603	588.501159213019	0	14.6536791960259						192	16	3	NaN	NaN	NaN	0.054784	1	33801	16.155	13.766	1	52899			694	2534	598	601	694	694		
AGTLLPVIQFLQK	13	Unmodified	_AGTLLPVIQFLQK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.43467	1426.85479	1.0364	0.00074043	-1.9999	-0.0014288	-0.96352	-0.00068837	714.433777331175	18.967	0.17731	18.967	18.869	19.046	0	474	40	1.00756305028564	0.0262082910405103	1.00756305028564	407.463447482206	0	10.5987616526389						636	21	4	NaN	NaN	NaN	0.005787	1	16301	57.032	47.518	1	248180			695	1826	599	602	695	695		
AGTLSITEFADMLSGNAGGFR	21	Unmodified	_AGTLSITEFADMLSGNAGGFR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1058.0124	2114.01025	0.95688	0.0010124	-0.5436	-0.00057513	0.41329	0.00043726	1058.51379388344	19.942	0.062065	19.942	19.924	19.986	0	156	49	1.21966378336455	0.0317824577719281	1.21966378336455	491.695673067767	0	12.8127908519238						226	8	5	NaN	NaN	NaN	2.309E-22	1	33522	157.52	134.38	1	83643			696	1816	600	603	696	696		
AGTQIENIDEDFRDGLK	17	Unmodified	_AGTQIENIDEDFRDGLK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.981438	1919.92248	0.16199	0.00010383	2.093	0.0013415	2.2549	0.0014454	640.982623211012	11.793	0.20397	11.793	11.74	11.944	0	657	61	0.884090832094921	0.0406427674647416	0.884090832094921	534.969580690342	0	24.5932244509164						905	24	5	NaN	NaN	NaN	9.3289E-20	1	30058	231.22	218	1	492880			697	221	601	604	697	697		
AGTQIENIDEDFRDGLK	17	Unmodified	_AGTQIENIDEDFRDGLK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.968519	1919.92248	1.6336	0.0015698	1.1274	0.0010834	2.761	0.0026532	960.969059227634	11.793	0.13301	11.793	11.74	11.873	0	204	85	1.18784641916898	0.0557875654316762	1.18784641916898	479.184621576896	0	22.5050503151546						882	16	4	NaN	NaN	NaN	9.4235E-10	1	30059	125.14	118.28	1	227640			698	221	601	604	698	698		
AGTQIENIEEDFR	13	Unmodified	_AGTQIENIEEDFR_			0	0	0	P12814;P35609;Q08043	P12814	P12814	ACTN1;ACTN2;ACTN3	Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.362627	1520.7107	1.1838	0.00090129	1.2934	0.00098471	2.4771	0.001886	761.36423046819	12.112	0.12417	12.112	12.059	12.183	0	429	28	1.03776581230406	0.0181041477634616	1.03776581230406	419.428811097558	0	7.31706622277738						277	15	4	NaN	NaN	NaN	9.5171E-05	1	19155	88.24	73.785	1	59303			699	671	602	605	699	699		
AGTQIENIEEDFRDGLK	17	Unmodified	_AGTQIENIEEDFRDGLK_			0	0	1	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.653321	1933.93813	0.030313	1.9572E-05	-1.066	-0.00068826	-1.0357	-0.00066868	645.986970369467	14.054	0.16849	14.054	14.001	14.169	0	675	40	0.871889544407995	0.026448974146953	0.871889544407995	527.559099113812	0	16.0036292015925						539	20	6	NaN	NaN	NaN	9.1875E-14	1	30402	163.09	124.99	1	311520			700	671	603	606	700	700		
AGTVVLDDVELR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGTVVLDDVELR_			1	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.856449	1327.69835	0.73746	0.00049031	-0.010555	-7.0177E-06	0.72691	0.00048329	664.856465359218	16.555	0.21281	16.555	16.51	16.723	0	462	40	1.01562323939346	0.0261865738228477	1.01562323939346	411.017372202289	0	10.5975684113687						478	25	4	NaN	NaN	NaN	1.129E-07	1	13224	132.39	91.889	1	254090			701	835	604	607	701	701		
AGVAFFHLQDYDQAR	15	Unmodified	_AGVAFFHLQDYDQAR_			0	0	0	Q8N5M4	Q8N5M4	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.949632	1736.82707	-0.90358	-0.00052403	-0.068696	-3.984E-05	-0.97227	-0.00056387	580.28360453143	12.52	0.10641	12.52	12.476	12.582	0	708	43	0.849494101904619	0.0285211140004684	0.849494101904619	514.423088045044	0	17.2713612792725						368	13	4	NaN	NaN	NaN	6.3137E-05	1	25510	59.731	58.679	1	103580			702	2259	605	608	702	702		
AGVAFFHLQDYDQAR	15	Unmodified	_AGVAFFHLQDYDQAR_			0	0	0	Q8N5M4	Q8N5M4	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.42081	1736.82707	1.6256	0.0014133	3.626	0.0031526	5.2516	0.0045659	869.423866287616	12.52	0.062074	12.52	12.493	12.556	0	276	40	1.13998907770044	0.0259708783379724	1.13998907770044	460.226366656078	0	10.4847346436532						100	8	2	NaN	NaN	NaN	0.021841	1	25512	36.952	31.564	1	22125			703	2259	605	608	703	703		
AGVLAHLEEER	11	Unmodified	_AGVLAHLEEER_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	408.55081	1222.6306	-1.8501	-0.00075585	0.35871	0.00014655	-1.4914	-0.0006093	408.551224374341	6.9683	0.062081	6.9683	6.9417	7.0037	0	852	22	0.751366682244005	0.0143571223589389	0.751366682244005	456.510524049207	0	8.72300782933746						110	8	3	NaN	NaN	NaN	0.04457	1	10091	19.324	9.8093	1	20513			704	972	606	609	704	704		
AGVLAHLEEER	11	Unmodified	_AGVLAHLEEER_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.322576	1222.6306	1.7118	0.0010482	1.4679	0.00089881	3.1797	0.001947	612.323323871415	6.9683	0.23056	6.9683	6.8974	7.128	0	528	67	0.971237000454584	0.0444907380915777	0.971237000454584	393.402219766006	0	18.0210958973583						708	27	4	NaN	NaN	NaN	8.5203E-08	1	10095	142.56	120.52	1	277340			705	972	606	609	705	705		
AGVLAHLEEERDLK	14	Unmodified	_AGVLAHLEEERDLK_			0	0	1	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.286133	1578.83657	0.35541	0.0001874	-1.6615	-0.00087608	-1.3061	-0.00068867	527.285455919521	7.6865	0.088743	7.6865	7.66	7.7487	0	753	25	0.81889964927511	0.0163363337922245	0.81889964927511	496.288450514711	0	9.90052174526028						142	11	3	NaN	NaN	NaN	9.4051E-06	1	20943	86.243	70.627	1	35179			706	972	607	610	706	706		
AGVLSQADYLNLVQCETLEDLK	22	Unmodified	_AGVLSQADYLNLVQCETLEDLK_			0	0	0	P61421	P61421	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.084345	2478.23121	1.3153	0.0010878	-0.31492	-0.00026046	1.0004	0.00082738	827.418573205679	18.488	0.053276	18.488	18.461	18.515	0	420	28	1.04379886199097	0.0180941555297223	1.04379886199097	630.588888710834	0	10.9311993365128						166	7	4	NaN	NaN	NaN	2.8727E-08	1	36725	81.373	79.188	1	33376			707	1344	608	611	707	707		
AGVNFSEFTGVWK	13	Unmodified	_AGVNFSEFTGVWK_			0	0	0	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.359159	1440.70376	0.94861	0.00068429	-2.5139	-0.0018134	-1.5653	-0.0011291	721.357514898668	15.934	0.28377	15.934	15.854	16.138	0	480	46	1.00353128488872	0.0302445172563094	1.00353128488872	405.79552822947	0	12.2299025858774						535	33	2	NaN	NaN	NaN	2.0136E-05	1	16689	124.46	44.567	1	777680			708	319	609	612	708	708		
AGVPGVAAPGAPAAAPPAK	19	Unmodified	_AGVPGVAAPGAPAAAPPAK_			0	0	0	P53350	P53350	P53350	PLK1	Serine/threonine-protein kinase PLK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.441015	1568.86748	2.7745	0.0021792	-0.11056	-8.6838E-05	2.6639	0.0020923	785.440798710821	7.66	0.12418	7.66	7.6068	7.7309	0	237	31	1.16593139812432	0.0199378074440928	1.16593139812432	471.098386942569	0	8.05593617359824						242	15	3	NaN	NaN	NaN	0.00068662	1	20643	67.548	63.565	1	47726			709	1231	610	613	709	709		
AGVQADEDEDGDEK	14	Unmodified	_AGVQADEDEDGDEK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.299889	1476.58523	2.4144	0.0017849	-1.9961	-0.0014757	0.41824	0.0003092	739.298595030379	2.437	0.10639	2.437	2.4193	2.5256	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	395.912632113229	0	8.16435323246566						137	13	3	NaN	NaN	NaN	4.0584E-06	1	17780	137.58	134.91	1	22771			710	849	611	614	710	710		
AGVQSGTNALLVVK	14	Unmodified	_AGVQSGTNALLVVK_			0	0	0	Q8N7H5	Q8N7H5	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.895909	1355.77726	1.7021	0.0011555	0.53011	0.00035989	2.2322	0.0015154	678.896112362114	9.6913	0.1064	9.6913	9.6381	9.7445	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.929674456349	0	8.15079860993143						213	13	3	NaN	NaN	NaN	0.0011902	1	14073	63.212	55.654	1	68527			711	2269	612	615	711	711		
AGVSVYGIVK	10	Unmodified	_AGVSVYGIVK_			0	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.792392	991.570232	-0.64721	-0.00032153	-0.82636	-0.00041053	-1.4736	-0.00073206	496.791820052162	9.381	0.15074	9.381	9.31	9.4608	0	708	52	0.849494101904619	0.0346303797525405	0.849494101904619	344.983510402971	0	14.0635584718407						335	18	2	NaN	NaN	NaN	0.048652	1	4100	34.781	29.033	1	147210			712	2504	613	616	712	712		
AGVVGPELHEQLLSAEK	17	Unmodified	_AGVVGPELHEQLLSAEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.978158	1775.94176	3.0222	0.0026867	-1.5856	-0.0014096	1.4366	0.0012771	889.477916445844	9.7622	0.14186	9.7622	9.709	9.8509	0	261	52	1.14997238118939	0.0339385748155798	1.14997238118939	464.175782412335	0	13.6989937990406						459	17	4	NaN	NaN	NaN	0.0023429	1	26576	40.83	13.452	1	102590			713	1816	614	617	713	713		
AGVVGPELHEQLLSAEK	17	Unmodified	_AGVVGPELHEQLLSAEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.987864	1775.94176	1.7663	0.0010474	0.20589	0.00012209	1.9722	0.0011695	593.322086116851	9.78	0.15959	9.78	9.7002	9.8598	0	591	67	0.928742107665821	0.0445956067149914	0.928742107665821	562.31484650617	0	27.000791218366						901	19	4	NaN	NaN	NaN	0.001977	1	26577	70.598	56.82	1	275540			714	1816	614	617	714	714		
AGWNAYIDNLMADGTCQDAAIVGYK	25	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AGWNAYIDNLMADGTCQDAAIVGYK_			1	0	0	P07737;CON__P02584	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	920.41951	2758.2367	1.8123	0.0016681	-0.2149	-0.0001978	1.5974	0.0014703	920.754318483095	20.102	0.079789	20.102	20.075	20.155	0	315	34	1.11400032671325	0.0220086485817799	1.11400032671325	672.618556692754	0	13.2885288171422						320	10	7	NaN	NaN	NaN	3.5063E-10	1	37782	96.453	95.755	1	318190			715	563	615	618	715	715		
AGWNAYIDNLMADGTCQDAAIVGYK	25	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AGWNAYIDNLM(Oxidation (M))ADGTCQDAAIVGYK_	AGWNAYIDNLM(1)ADGTCQDAAIVGYK	AGWNAYIDNLM(87)ADGTCQDAAIVGYK	1	1	0	P07737;CON__P02584	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	925.751148	2774.23162	0.94511	0.00087494	0.91811	0.00084994	1.8632	0.0017249	926.421287702863	19.073	0.097538	19.073	19.038	19.135	0	318	28	1.11199926528787	0.0180120343234753	1.11199926528787	671.390920606393	0	10.8751117774359						273	12	5	NaN	NaN	NaN	6.6504E-10	1	37828	86.798	82.64	1	66459			716	563	615	619	716	716	140	
AGYIIPLQGPGLTTTESR	18	Unmodified	_AGYIIPLQGPGLTTTESR_			0	0	0	P10253	P10253	P10253	GAA	Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.50454	1872.99453	1.984	0.00186	-4.4165	-0.0041405	-2.4325	-0.0022805	937.498669395864	14.232	0.17733	14.232	14.178	14.356	0	225	94	1.17390432875292	0.0618115131409394	1.17390432875292	473.645443812455	0	24.9396316695256						616	21	3	NaN	NaN	NaN	0.0016378	1	29010	66.509	52.732	1	182580			717	622	616	620	717	717		
AGYITPVPGGVGPMTVAMLMK	21	Unmodified	_AGYITPVPGGVGPMTVAMLMK_			0	0	0	P13995	P13995	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.54598	2089.07741	0.57822	0.00060456	2.0157	0.0021076	2.594	0.0027121	1046.05011963716	19.038	0.14187	19.038	18.958	19.1	0	117	61	1.24546401832526	0.0396899589037651	1.24546401832526	502.135888725758	0	16.0018695798453						368	17	4	NaN	NaN	NaN	0.0012606	1	33176	37.886	30.897	1	55382			718	691	617	621	718	718		
AGYPQYVSEILEK	13	Unmodified	_AGYPQYVSEILEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.885207	1495.75586	1.4426	0.0010803	-0.60654	-0.00045423	0.83606	0.00062611	748.885036243786	14.178	0.50541	14.178	13.921	14.427	0	438	46	1.03173026378327	0.0301819168183546	1.03173026378327	417.052207605164	0	12.2003158002685						1150	58	4	NaN	NaN	NaN	0.00044359	1	18417	61.577	52.316	1	526930			719	1055	618	622	719	719		
AGYQDMPEYENFK	13	Unmodified	_AGYQDMPEYENFK_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.340306	1590.66606	2.6123	0.0020802	3.4443	0.0027428	6.0565	0.0048231	796.844195928805	9.7889	0.16847	9.7889	9.7179	9.8864	0	405	58	1.05384839605172	0.0381829759272949	1.05384839605172	425.759813704201	0	15.4261056698322						590	20	3	NaN	NaN	NaN	0.0019488	1	21288	77.358	75.375	1	179480			720	1851	619	623	720	720		
AGYSLQELFHLTR	13	Unmodified	_AGYSLQELFHLTR_			0	0	0	Q9BWH6	Q9BWH6	Q9BWH6	RPAP1	RNA polymerase II-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.271935	1533.79398	-1.6263	-0.00083308	0.67587	0.00034623	-0.95038	-0.00048685	512.272627179991	15.704	0.070921	15.704	15.677	15.748	0	729	22	0.835224628594324	0.0142754238517586	0.835224628594324	506.311142317373	0	8.65372728485374						104	9	3	NaN	NaN	NaN	0.038494	1	19546	10.25	8.1137	1	20513			721	2779	620	624	721	721		
AHAAVWNAQEAQADFAK	17	Unmodified	_AHAAVWNAQEAQADFAK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.963942	1826.87	0.5364	0.00032718	0.64875	0.00039571	1.1851	0.0007229	610.298424018596	8.3697	0.079869	8.3697	8.3342	8.414	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	547.460836162512	0	14.7449457358167						261	10	4	NaN	NaN	NaN	3.8794E-07	1	27891	108.5	85.598	1	67655			722	57	621	625	722	722		
AHAAVWNAQEAQADFAK	17	Unmodified	_AHAAVWNAQEAQADFAK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.442274	1826.87	2.3449	0.0021443	-0.24052	-0.00021994	2.1044	0.0019243	914.943453533197	8.3697	0.070983	8.3697	8.3253	8.3963	0	270	37	1.14398322290989	0.0239648752236348	1.14398322290989	461.658571189584	0	9.67111215699305						216	9	4	NaN	NaN	NaN	1.7087E-06	1	27892	47.915	46.073	1	50400			723	57	621	625	723	723		
AHCVTLVQLSISCDHLIDK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AHCVTLVQLSISCDHLIDK_			1	0	0	Q99829	Q99829	Q99829	CPNE1	Copine-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	751.045167	2250.11367	0.88046	0.00066126	4.2258	0.0031737	5.1062	0.003835	751.716460654568	14.693	0.17737	14.693	14.604	14.781	0	432	46	1.035754240522	0.0301860841315895	1.035754240522	626.082412462977	0	18.2465836358934						463	21	6	NaN	NaN	NaN	1.3246E-05	1	35184	115.24	110.93	1	125900			724	2678	622	626	724	724		
AHDGAEVCSAIFSK	14	Unmodified	_AHDGAEVCSAIFSK_			0	0	0	Q05048	Q05048	Q05048	CSTF1	Cleavage stimulation factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.348465	1490.68238	1.8774	0.0014012	-0.40518	-0.00030241	1.4722	0.0010988	746.348646469413	7.2875	0.13302	7.2875	7.2343	7.3674	0	429	31	1.03776581230406	0.0201171086492766	1.03776581230406	419.505021159769	0	8.13211226418343						209	16	4	NaN	NaN	NaN	0.0041475	1	18240	62.705	57.554	1	54049			725	1548	623	627	725	725		
AHDGGIYAISWSPDSTHLLSASGDK	25	Unmodified	_AHDGGIYAISWSPDSTHLLSASGDK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	647.062125	2584.21939	0.73441	0.00047521	0.23297	0.00015075	0.96739	0.00062596	647.312853284565	13.283	0.10639	13.283	13.23	13.336	0	570	58	0.942920803299286	0.0384957093532465	0.942920803299286	759.352119782419	0	31.0013294834873						261	13	4	NaN	NaN	NaN	0.023193	1	37175	39.48	39.267	1	54553			726	300	624	628	726	726		
AHDGGIYAISWSPDSTHLLSASGDK	25	Unmodified	_AHDGGIYAISWSPDSTHLLSASGDK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	862.413741	2584.21939	1.5344	0.0013233	0.091915	7.9269E-05	1.6263	0.0014025	862.748105119258	13.283	0.097534	13.283	13.247	13.345	0	492	58	0.995464410099171	0.0383256164617212	0.995464410099171	601.251120557206	0	23.1483110896552						611	12	5	NaN	NaN	NaN	1.4097E-09	1	37176	63.883	63.855	1	197800			727	300	624	628	727	727		
AHEGEIEDLALGPDGK	16	Unmodified	_AHEGEIEDLALGPDGK_			0	0	0	Q9HCU5	Q9HCU5	Q9HCU5	PREB	Prolactin regulatory element-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.902116	1649.78968	1.9592	0.0016181	-1.2976	-0.0010717	0.6616	0.00054642	825.901486076592	8.9021	0.10656	8.9021	8.8665	8.973	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.116371952242	0	7.29577740927192						196	13	3	NaN	NaN	NaN	0.02409	1	23026	46.358	43.879	1	39116			728	2967	625	629	728	728		
AHEILPNLVCCSAK	14	Unmodified	_AHEILPNLVCCSAK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.402718	1610.79088	1.7104	0.0013793	-0.70429	-0.00056794	1.0061	0.00081135	806.402286618263	9.3632	0.17737	9.3632	9.2923	9.4696	0	384	34	1.06790610341098	0.0220754584082121	1.06790610341098	431.392680982652	0	8.91762970192025						456	21	4	NaN	NaN	NaN	0.0050424	1	21917	58.476	48.226	1	139890			729	1174	626	630	729	729		
AHFPLDVQWNDLDYMDSR	18	Unmodified	_AHFPLDVQWNDLDYMDSR_			0	0	0	P10253	P10253	P10253	GAA	Lysosomal alpha-glucosidase;76 kDa lysosomal alpha-glucosidase;70 kDa lysosomal alpha-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.337227	2220.98985	-0.5823	-0.00043168	-0.86093	-0.00063824	-1.4432	-0.0010699	741.670825508089	16.369	0.11528	16.369	16.315	16.431	0	609	31	0.916577990479294	0.0202847729162148	0.916577990479294	554.088503750997	0	12.2625238559316						334	14	4	NaN	NaN	NaN	2.2175E-07	1	34896	85.742	84.647	1	68809			730	622	627	631	730	730		
AHGHCLHEIFLLR	13	Unmodified	_AHGHCLHEIFLLR_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	401.463501	1601.8249	-2.4778	-0.00099476	1.533	0.00061545	-0.94482	-0.00037931	401.714877575769	8.5205	0.16847	8.5205	8.485	8.6534	0	789	22	0.794378096728713	0.0143151894202939	0.794378096728713	641.819635946514	0	11.5659906788393						271	20	4	NaN	NaN	NaN	0.036529	1	21652	30.918	25.422	1	68446			731	49	628	632	731	731		
AHGPGLEGGLVGK	13	Unmodified	_AHGPGLEGGLVGK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.327662	1190.64077	1.1426	0.00068136	0.77154	0.00046009	1.9141	0.0011414	596.328277922528	5.2745	0.15075	5.2745	5.2391	5.3898	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	380.406384674715	0	9.84761951746412						288	18	3	NaN	NaN	NaN	0.0004209	1	9189	92.428	64.691	1	114590			732	326	629	633	732	732		
AHIAQLCEK	9	Unmodified	_AHIAQLCEK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.276583	1068.53861	1.5836	0.00084769	-1.0884	-0.00058261	0.49521	0.00026507	535.276380593459	2.9513	0.24826	2.9513	2.9158	3.1641	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	352.078251352711	0	9.0821397307551						417	29	3	NaN	NaN	NaN	2.5929E-05	1	5920	96.311	85.483	1	131250			733	1503	630	634	733	733		
AHIHMLLEGLR	11	Unmodified	_AHIHMLLEGLR_			0	0	0	Q9UBK9	Q9UBK9	Q9UBK9	UXT	Protein UXT	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	430.576413	1288.70741	-1.5998	-0.00068884	-0.49168	-0.0002117	-2.0915	-0.00090055	430.576220382361	9.106	0.079818	9.106	9.0883	9.1681	0	762	22	0.812773098473386	0.0142992632781638	0.812773098473386	493.537134529497	0	8.68288755797067						111	10	3	NaN	NaN	NaN	0.045856	1	12030	29.31	17.352	1	20723			734	3177	631	635	734	734		
AHIVFDFHQAADGIQEQQR	19	Unmodified	_AHIVFDFHQAADGIQEQQR_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	553.273892	2209.06646	-0.013394	-7.4103E-06	1.0524	0.00058227	1.039	0.00057486	553.525112903366	10.445	0.10643	10.445	10.41	10.516	0	708	31	0.849494101904619	0.0203750522723063	0.849494101904619	684.734385235422	0	16.4233028346366						277	13	5	NaN	NaN	NaN	0.00064602	1	34773	32.759	31.948	1	77328			735	911	632	636	735	735		
AHLLADMAHISGLVAAK	17	Unmodified	_AHLLADMAHISGLVAAK_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.474531	1716.93451	2.1438	0.0018425	-0.93284	-0.00080175	1.2109	0.0010408	859.473960743177	13.363	0.15078	13.363	13.318	13.469	0	213	61	1.18187287897418	0.039837296457305	1.18187287897418	477.179114682882	0	16.0842390015378						798	18	5	NaN	NaN	NaN	1.2402E-07	1	24978	92.747	82.262	1	283060			736	954	633	637	736	736		
AHLLAEVIENLECDPR	16	Unmodified	_AHLLAEVIENLECDPR_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.984125	1877.93055	-1.3497	-0.00084625	-0.65024	-0.00040769	-2	-0.0012539	627.318066546101	16.759	0.18621	16.759	16.706	16.892	0	690	40	0.86171403876517	0.0264710186728029	0.86171403876517	521.512803340278	0	16.0203670060995						525	22	4	NaN	NaN	NaN	1.6529E-06	1	29097	108.2	107.52	1	138130			737	2491	634	638	737	737		
AHLLAEVIENLECDPR	16	Unmodified	_AHLLAEVIENLECDPR_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.97255	1877.93055	0.70197	0.00065983	2.9598	0.0027822	3.6618	0.003442	940.477308071201	16.768	0.29263	16.768	16.706	16.998	0	195	100	1.19381749893585	0.0657812803757392	1.19381749893585	481.670649934113	0	26.5408340054688						724	34	4	NaN	NaN	NaN	0.0021613	1	29100	50.314	48.726	1	137730			738	2491	634	638	738	738		
AHLMEIQVNGGTVAEK	16	Unmodified	_AHLMEIQVNGGTVAEK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.937979	1695.8614	2.3635	0.0020065	-2.7184	-0.0023078	-0.3549	-0.00030129	849.436140458941	8.3164	0.10645	8.3164	8.2721	8.3785	0	321	37	1.10999792833052	0.0240177010058356	1.10999792833052	448.204330174863	0	9.69806998455522						252	13	3	NaN	NaN	NaN	0.00024872	1	24380	79.235	73.208	1	75246			739	1010	635	639	739	739		
AHLSENELEALEK	13	Unmodified	_AHLSENELEALEK_			0	0	0	P98175	P98175	P98175	RBM10	RNA-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.87537	1481.73619	1.5549	0.0011535	-3.1616	-0.0023455	-1.6067	-0.001192	742.374142776648	8.1302	0.22183	8.1302	7.9793	8.2011	0	468	46	1.01159370163332	0.0302319815976242	1.01159370163332	408.947962698708	0	12.2216135418117						376	26	3	NaN	NaN	NaN	0.001136	1	17961	62.454	55.314	1	88630			740	1490	636	640	740	740		
AHMGMFTELAILYSK	15	Unmodified	_AHMGMFTELAILYSK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.289721	1710.84733	-1.8544	-0.0010594	-0.54555	-0.00031167	-2.4	-0.0013711	571.289744719334	16.573	0.079793	16.573	16.528	16.608	0	741	16	0.827064408645228	0.0102038209152703	0.827064408645228	500.90062162416	0	6.17980919741512						94	10	3	NaN	NaN	NaN	0.0014421	1	24784	54.27	51.969	1	15408			741	1503	637	641	741	741		
AHMGMFTELAILYSK	15	Unmodified	_AHMGMFTELAILYSK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.289721	1710.84733	-0.27328	-0.00015612	-1.7872	-0.001021	-2.0605	-0.0011772	571.289118478033	16.564	0.13301	16.564	16.519	16.652	0	636	25	0.898312834727904	0.0162480818907916	0.898312834727904	544.051294092061	0	9.84043602346662						247	16	3	NaN	NaN	NaN	6.0792E-05	1	24785	90.306	87.428	1	59357			742	1503	637	641	742	742		
AHNVPVLVCCETYK	14	Unmodified	_AHNVPVLVCCETYK_			0	0	0	Q9UI10	Q9UI10	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.408	1688.80145	2.6502	0.0022405	1.9131	0.0016174	4.5633	0.0038579	845.912004453102	7.2875	0.15962	7.2875	7.2166	7.3762	0	354	34	1.08796502040166	0.0220511287712513	1.08796502040166	439.322566559855	0	8.9042922388731						263	19	3	NaN	NaN	NaN	0.065055	1	24175	22.142	17.896	1	46428			743	3230	638	642	743	743		
AHPVFYQGTYSQALNDAK	18	Unmodified	_AHPVFYQGTYSQALNDAK_			0	0	0	Q96CS3	Q96CS3	Q96CS3	FAF2	FAS-associated factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.66204	2008.96429	0.61254	0.00041081	-0.86675	-0.0005813	-0.25421	-0.00017049	670.661325464592	9.177	0.070943	9.177	9.1415	9.2125	0	618	34	0.910492137470517	0.0223147973671984	0.910492137470517	550.77012869733	0	13.4985501927904						190	9	4	NaN	NaN	NaN	2.4565E-07	1	31792	130.71	121.45	1	38088			744	2496	639	643	744	744		
AHQDIHTQLQDVK	13	Unmodified	_AHQDIHTQLQDVK_			0	0	0	O00461	O00461	O00461	GOLIM4	Golgi integral membrane protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.894429	1531.7743	3.1892	0.0024458	-2.6536	-0.002035	0.53564	0.00041078	766.891947632159	3.7849	0.035482	3.7849	3.7672	3.8026	0	399	10	1.0578662689527	0.00602639371162339	1.0578662689527	427.524874185295	0	2.43549991995064						32	5	2	NaN	NaN	NaN	0.067523	1	19492	18.811	17.012	1	4727.8			745	82	640	644	745	745		
AHQDIHTQLQDVK	13	Unmodified	_AHQDIHTQLQDVK_			0	0	0	O00461	O00461	O00461	GOLIM4	Golgi integral membrane protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.598711	1531.7743	1.1548	0.00059077	1.58	0.00080831	2.7347	0.0013991	511.599669443414	3.776	0.035524	3.776	3.7583	3.7938	0	714	22	0.845418525735192	0.0142655083494234	0.845418525735192	512.49669032519	0	8.64781831995936						77	5	3	NaN	NaN	NaN	0.00027774	1	19494	40.861	30.61	1	17289			746	82	640	644	746	746		
AHQLVMEGYNWCHDR	15	Unmodified	_AHQLVMEGYNWCHDR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.419962	1914.82537	1.8183	0.0017427	-0.018133	-1.7379E-05	1.8002	0.0017253	958.921657003818	7.6156	0.088682	7.6156	7.5801	7.6688	0	156	37	1.21966378336455	0.0238401103088965	1.21966378336455	492.029345784195	0	9.61743231101866						234	11	4	NaN	NaN	NaN	4.9108E-06	1	29938	82.437	80.135	1	52240			747	1439	641	645	747	747		
AHQLVMEGYNWCHDR	15	Unmodified	_AHQLVMEGYNWCHDR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.2824	1914.82537	1.291	0.00082529	0.77309	0.00049422	2.064	0.0013195	639.283334611585	7.6156	0.11527	7.6156	7.5713	7.6865	0	585	34	0.932794566565362	0.0222869832094168	0.932794566565362	564.451328231321	0	13.4862677439738						387	14	5	NaN	NaN	NaN	2.2526E-08	1	29939	106.47	97.204	1	146770			748	1439	641	645	748	748		
AHQLWLSVEALK	12	Unmodified	_AHQLWLSVEALK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.893169	1393.77178	1.022	0.00071321	-0.56875	-0.00039692	0.45321	0.00031629	697.892834580197	12.547	0.11525	12.547	12.502	12.618	0	441	34	1.02971785871157	0.0221334029246503	1.02971785871157	416.517836857066	0	8.9528962040111						250	14	4	NaN	NaN	NaN	0.049527	1	15268	39.702	36.824	1	77159			749	1915	642	646	749	749		
AHQTGIHATEELK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AHQTGIHATEELK_			1	0	0	Q6IBS0	Q6IBS0	Q6IBS0	TWF2	Twinfilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.875704	1475.73686	2.8868	0.002133	-1.3621	-0.0010064	1.5247	0.0011266	738.874700842317	4.4943	0.097532	4.4943	4.4677	4.5652	0	378	37	1.07192009927972	0.0240806587960416	1.07192009927972	433.351869499461	0	9.73523914240928						232	12	3	NaN	NaN	NaN	2.9261E-11	1	17766	147.02	109.27	1	67590			750	2037	643	647	750	750		
AHQVVEDGYEFFAK	14	Unmodified	_AHQVVEDGYEFFAK_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.263217	1638.76782	0.081924	4.4834E-05	0.38353	0.00020989	0.46545	0.00025473	547.263602724	10.365	0.13296	10.365	10.321	10.454	0	699	61	0.85560534332665	0.0407274835895337	0.85560534332665	518.36896014098	0	24.6747679664798						456	16	4	NaN	NaN	NaN	0.00014976	1	22722	79.889	65.434	1	127520			751	1366;992;1365	644	648	751	751		
AHQVVEDGYEFFAK	14	Unmodified	_AHQVVEDGYEFFAK_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.391187	1638.76782	2.5219	0.002069	9.2623	0.0075987	11.784	0.0096676	820.401819241971	10.374	0.28378	10.374	10.312	10.596	0	351	67	1.08996939197032	0.0441174739341266	1.08996939197032	440.241264749634	0	17.8191540656105						879	33	5	NaN	NaN	NaN	0.013655	1	22723	63.908	51.327	1	358540			752	1366;992;1365	644	648	752	752		
AHSIQIMK	8	Unmodified	_AHSIQIMK_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.257662	926.500772	0.54325	0.00025221	0.60676	0.00028169	1.15	0.0005339	464.258520276302	3.6431	0.31031	3.6431	3.5898	3.9002	4.4409E-16	735	64	0.831145085810763	0.042856069384425	0.831145085810763	337.856035782088	0	17.420763183963						760	36	4	NaN	NaN	NaN	0.00081018	1	2810	121.31	89.185	1	321910			753	1528	645	649	753	753		
AHSSMVGVNLPQK	13	Unmodified	_AHSSMVGVNLPQK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.358636	1366.70272	2.3034	0.0015764	-1.0621	-0.00072687	1.2413	0.00084951	684.358292401253	5.9751	0.30155	5.9751	5.8332	6.1347	0	510	79	0.983355730988811	0.0524492251347215	0.983355730988811	397.841875207146	0	21.2196842131352						881	35	4	NaN	NaN	NaN	1.6526E-43	1	14399	260.28	239.19	1	562590			754	484	646	650	754	754		
AHTMTDDVTFWK	12	Unmodified	_AHTMTDDVTFWK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.334827	1450.6551	1.3357	0.00097014	0.09693	7.0404E-05	1.4326	0.0010405	726.335245760343	10.321	0.11527	10.321	10.285	10.401	0	483	49	1.00151498427745	0.0322496762146521	1.00151498427745	404.953769594672	0	13.0398727491361						342	14	4	NaN	NaN	NaN	3.5243E-11	1	16991	141.29	128.7	1	96353			755	1503	647	651	755	755		
AHTSSTQLQEELEK	14	Unmodified	_AHTSSTQLQEELEK_			0	0	0	Q9Y6Y8	Q9Y6Y8	Q9Y6Y8	SEC23IP	SEC23-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.894291	1599.77403	1.7902	0.0014337	-2.6041	-0.0020856	-0.81397	-0.0006519	800.892453448601	5.2835	0.088698	5.2835	5.2479	5.3366	0	402	28	1.05585747106793	0.0180816768665149	1.05585747106793	426.550548890019	0	7.30472568846142						162	11	3	NaN	NaN	NaN	0.0052709	1	21570	65.408	60.88	1	32521			756	3478	648	652	756	756		
AHVQEVAQHNLK	12	Unmodified	_AHVQEVAQHNLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.580992	1372.72115	-0.32497	-0.00014903	1.4244	0.00065319	1.0994	0.00050416	458.581811778273	2.4459	0.11529	2.4459	2.4281	2.5434	0	807	22	0.782101955086014	0.0143271514943355	0.782101955086014	474.604899668629	0	8.69418143413094						113	14	2	NaN	NaN	NaN	0.044114	1	14579	44.57	35.056	1	33201			757	2167	649	653	757	757		
AHWTPFEGQK	10	Unmodified	_AHWTPFEGQK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.793455	1199.57236	1.7516	0.0010523	0.5712	0.00034317	2.3228	0.0013955	600.794590920017	6.0461	0.22174	6.0461	5.9573	6.1791	0	582	52	0.934820374997243	0.0344435264465663	0.934820374997243	378.732808675824	0	13.9544385859653						484	26	4	NaN	NaN	NaN	0.0028752	1	9440	60.892	53.245	1	151100			758	867	650	654	758	758		
AIAAAHTFLLK	11	Unmodified	_AIAAAHTFLLK_			0	0	0	O75718	O75718	O75718	CRTAP	Cartilage-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.347866	1154.68118	0.86295	0.00049908	1.7601	0.001018	2.6231	0.001517	578.349080382813	8.547	0.18621	8.547	8.4229	8.6091	0	546	43	0.959108205975751	0.0283201170105575	0.959108205975751	388.744514078094	0	11.478673685941						261	22	4	NaN	NaN	NaN	0.00078755	1	8203	74.424	51.371	1	72082			759	355	651	655	759	759		
AIADHLFWSEETK	13	Unmodified	_AIADHLFWSEETK_			0	0	0	Q96GA3	Q96GA3	Q96GA3	LTV1	Protein LTV1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.880456	1545.74636	1.8391	0.0014232	1.7987	0.0013919	3.6377	0.0028152	773.88196063577	11.483	0.097537	11.483	11.456	11.553	0	357	25	1.08596037261705	0.0160382885112604	1.08596037261705	438.843243207754	0	6.48117069762105						174	12	3	NaN	NaN	NaN	0.0011303	1	19911	60	58.743	1	38631			760	2537	652	656	760	760		
AIADTGANVVVTGGK	15	Unmodified	_AIADTGANVVVTGGK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.875173	1371.73579	2.0545	0.0014112	0.16064	0.00011034	2.2151	0.0015215	686.875462215562	6.986	0.39021	6.986	6.8885	7.2787	0	507	127	0.985374541851584	0.0846321621201243	0.985374541851584	398.643984916669	0	34.238861394048						2091	45	5	NaN	NaN	NaN	2.2269E-17	1	14548	202.72	175.13	1	1244200			761	1174	653	657	761	761		
AIAELGIYPAVDPLDSTSR	19	Unmodified	_AIAELGIYPAVDPLDSTSR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.34935	1987.02622	-1.1795	-0.00078244	0.18791	0.00012465	-0.99162	-0.00065779	663.683907811271	16.342	0.097537	16.342	16.307	16.404	0	666	25	0.877991458330206	0.0162683841309829	0.877991458330206	531.150182855174	0	9.84173037669814						203	12	4	NaN	NaN	NaN	4.1046E-05	1	31396	52.201	49.127	1	52990			762	541	654	658	762	762		
AIAELGIYPAVDPLDSTSR	19	Unmodified	_AIAELGIYPAVDPLDSTSR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.520387	1987.02622	1.6509	0.0016418	0.93164	0.00092653	2.5825	0.0025684	995.022990424768	16.342	0.38127	16.342	16.191	16.573	0	198	109	1.1918274123006	0.0716776689562941	1.1918274123006	480.674053437107	0	28.908208791438						2857	44	7	NaN	NaN	NaN	5.7128E-07	1	31397	105.78	95.021	1	3145400			763	541	654	658	763	763		
AIAHYEQSADYYK	13	Unmodified	_AIAHYEQSADYYK_			0	0	0	P54920;Q9H115	P54920	P54920	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.862263	1557.70997	2.6854	0.0020942	-0.93796	-0.00073148	1.7474	0.0013628	779.861581425055	5.1681	0.097534	5.1681	5.1415	5.2391	0	420	31	1.04379886199097	0.0201060050174831	1.04379886199097	421.776768922909	0	8.12440609108006						194	12	4	NaN	NaN	NaN	0.012075	1	20279	51.454	48.974	1	46676			764	1260	655	659	764	764		
AIAHYEQSADYYK	13	Unmodified	_AIAHYEQSADYYK_			0	0	0	P54920;Q9H115	P54920	P54920	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.243934	1557.70997	0.29295	0.00015241	1.481	0.00077048	1.7739	0.00092288	520.245673069141	5.1681	0.079806	5.1681	5.1415	5.2213	0	744	28	0.82502364452135	0.0183694328474171	0.82502364452135	500.058724610407	0	11.13397806535						153	10	4	NaN	NaN	NaN	0.019909	1	20280	48.785	44.803	1	41395			765	1260	655	659	765	765		
AIAIASDMQDDFISPCGACR	20	Unmodified	_AIAIASDMQDDFISPCGACR_			0	0	0	P32320	P32320	P32320	CDA	Cytidine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1099.48738	2196.96021	1.2	0.0013194	-0.10483	-0.00011526	1.0952	0.0012042	1099.98913546421	14.32	0.12414	14.32	14.267	14.391	0	102	64	1.25537494996371	0.0416316377030852	1.25537494996371	505.967550158826	0	16.7792560607799						516	15	4	NaN	NaN	NaN	2.2412E-05	1	34645	53.773	50.699	1	92273			766	937	656	660	766	766		
AIAIPVDLDSQVNNLFLK	18	Unmodified	_AIAIPVDLDSQVNNLFLK_			0	0	0	Q14643	Q14643	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.55149	1969.08843	0.18444	0.00018177	0.84545	0.00083323	1.0299	0.001015	986.053708673561	19.206	0.044336	19.206	19.188	19.233	0	168	28	1.21171599086077	0.0178886694452165	1.21171599086077	488.726167066081	0	7.21510726755554						78	6	2	NaN	NaN	NaN	0.0079137	1	31101	27.357	26.262	1	16701			767	1759	657	661	767	767		
AIALQPENPMAHFLLGR	17	Unmodified	_AIALQPENPMAHFLLGR_			0	0	0	Q96TC7	Q96TC7	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.673334	1876.99817	-0.39288	-0.00024621	-1.6528	-0.0010357	-2.0456	-0.0012819	627.006450329999	16.519	0.12409	16.519	16.448	16.573	0	648	91	0.890187667287968	0.0610319114578003	0.890187667287968	538.747122265761	0	36.9368930536217						457	15	2	NaN	NaN	NaN	0.0001129	1	29082	57.003	53.498	1	156220			768	2635	658	662	768	768		
AIANECQANFISIK	14	Unmodified	_AIANECQANFISIK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.900865	1577.78718	2.1448	0.0016942	-0.63989	-0.00050545	1.5049	0.0011887	789.900422426452	10.578	0.21281	10.578	10.489	10.702	0	384	55	1.06790610341098	0.0361409246465043	1.06790610341098	431.469606122538	0	14.6021363416913						529	25	4	NaN	NaN	NaN	0.00034069	1	20907	72.846	70.545	1	184240			769	1265	659	663	769	769		
AIAVLTSGGDAQGMNAAVR	19	Unmodified	_AIAVLTSGGDAQGMNAAVR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.464892	1800.91523	1.7115	0.0015429	-0.91013	-0.00082045	0.80142	0.00072245	901.965370640297	10.25	0.11528	10.25	10.197	10.312	0	306	31	1.12000185836644	0.0200009774591183	1.12000185836644	452.029884540576	0	8.07234333051065						270	14	4	NaN	NaN	NaN	4.1679E-07	1	27242	89.359	85.854	1	62672			770	578	660	664	770	770		
AIAVLTSGGDAQGMNAAVR	19	Unmodified	_AIAVLTSGGDAQGMNAAVR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.464892	1800.91523	1.352	0.0012188	0.43921	0.00039594	1.7912	0.0016147	901.465712640616	10.259	0.053193	10.259	10.232	10.285	0	201	37	1.18983705239708	0.0238826831723766	1.18983705239708	480.215185222785	0	9.63898972563891						120	7	3	NaN	NaN	NaN	7.204E-07	1	27243	91.939	78.765	1	19650			771	578	660	664	771	771		
AIDDNMSLDEIEK	13	Unmodified	_AIDDNMSLDEIEK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.845421	1491.67629	2.2259	0.0016624	0.46258	0.00034548	2.6885	0.0020079	746.846113641271	10.888	0.30148	10.888	10.791	11.092	0	450	73	1.02367897599655	0.0483010891795206	1.02367897599655	413.808038391239	0	19.52504587298						1373	35	4	NaN	NaN	NaN	7.2177E-17	1	18280	220.81	180.42	1	1788800			772	922	661	665	772	772		
AIDLFTDAIK	10	Unmodified	_AIDLFTDAIK_			0	0	0	P50502;Q8NFI4;Q8IZP2	P50502	P50502	ST13;ST13P5;ST13P4	Hsc70-interacting protein;Putative protein FAM10A5;Putative protein FAM10A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.808239	1105.60193	0.69157	0.000383	-1.8039	-0.00099899	-1.1123	-0.00061599	553.807374399286	14.249	0.24825	14.249	14.205	14.453	0	612	49	0.914549654013882	0.0324601421719642	0.914549654013882	370.878258137147	0	13.163594710014						661	29	4	NaN	NaN	NaN	0.0011115	1	6872	57.032	37.545	1	253270			773	1165	662	666	773	773		
AIDTTQLFSLPK	12	Unmodified	_AIDTTQLFSLPK_			0	0	0	Q16822	Q16822	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.371735	1332.72892	0.77382	0.00051642	1.2806	0.00085466	2.0545	0.0013711	667.372650253644	15.012	0.12413	15.012	14.967	15.092	0	465	58	1.01360860968299	0.0382991413096786	1.01360860968299	410.186107146041	0	15.4988577748629						494	15	3	NaN	NaN	NaN	0.0052225	1	13381	52.837	45.698	1	128210			774	1908	663	667	774	774		
AIEDEGGNPDEIEITSEGNK	20	Unmodified	_AIEDEGGNPDEIEITSEGNK_			0	0	0	Q15424	Q15424	Q15424	SAFB	Scaffold attachment factor B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1058.97948	2115.9444	2.3178	0.0024545	-1.2385	-0.0013115	1.0793	0.001143	1059.47955990081	8.7068	0.14207	8.7068	8.6623	8.8044	0	237	106	1.16593139812432	0.0697488655771445	1.16593139812432	470.031178928954	0	28.1184138011237						1072	17	4	NaN	NaN	NaN	6.5145E-16	1	33555	166.48	161.38	1	303130			775	1846	664	668	775	775		
AIEEGIPAFTCEEYVK	16	Unmodified	_AIEEGIPAFTCEEYVK_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.44276	1854.87097	1.811	0.0016814	0.8827	0.00081954	2.6937	0.0025009	928.945099207849	13.318	0.21285	13.318	13.159	13.371	0	267	40	1.14597988355104	0.0259565934896919	1.14597988355104	462.411720534446	0	10.473685644105						540	25	4	NaN	NaN	NaN	0.06192	1	28593	31.04	25.653	1	127080			776	3343	665	669	776	776		
AIEEGTLEEIEEEVR	15	Unmodified	_AIEEGTLEEIEEEVR_			0	0	0	P51532	P51532	P51532	SMARCA4	Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.425621	1744.83669	1.8016	0.0015736	0.62036	0.00054184	2.422	0.0021154	873.427074269441	14.914	0.13299	14.914	14.861	14.994	0	339	52	1.09798411722691	0.0340414857493967	1.09798411722691	443.252391326248	0	13.7424300825293						257	16	2	NaN	NaN	NaN	0.00021333	1	25745	46.358	42.052	1	73702			777	1187	666	670	777	777		
AIEEGVNHMWTVSAFQQHPR	20	Unmodified	_AIEEGVNHMWTVSAFQQHPR_			0	0	0	P46926;Q8TDQ7	P46926	P46926	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.711288	2336.11203	1.9899	0.0015516	-0.41997	-0.00032746	1.57	0.0012241	780.045764893414	10.826	0.097563	10.826	10.782	10.879	0	423	34	1.04178812298108	0.0221242386339204	1.04178812298108	629.587557460789	0	13.3704205825954						255	12	4	NaN	NaN	NaN	0.057888	1	35939	28.432	27.957	1	59459			778	1092	667	671	778	778		
AIEEGVNHMWTVSAFQQHPR	20	Unmodified	_AIEEGVNHMWTVSAFQQHPR_			0	0	0	P46926;Q8TDQ7	P46926	P46926	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	585.035285	2336.11203	0.9913	0.00057995	0.96861	0.00056667	1.9599	0.0011466	585.286926199047	10.817	0.17734	10.817	10.755	10.933	0	648	82	0.890187667287968	0.0548031082351559	0.890187667287968	717.29191343341	0	44.1590327664883						661	21	6	NaN	NaN	NaN	0.022094	1	35940	32.61	31.184	1	275400			779	1092	667	671	779	779		
AIEFLNNPPEEAPR	14	Unmodified	_AIEFLNNPPEEAPR_			0	0	0	Q4G0J3	Q4G0J3	Q4G0J3	LARP7	La-related protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.904462	1595.79437	1.9097	0.0015257	0.60479	0.00048317	2.5145	0.0020088	798.90537611454	11.012	0.12412	11.012	10.977	11.101	0	393	46	1.0618830335572	0.030107052507665	1.0618830335572	428.993956199018	0	12.1630567177332						298	15	4	NaN	NaN	NaN	0.00032621	1	21452	59.731	30.6	1	60241			780	1940	668	672	780	780		
AIEGFNQSSHQK	12	Unmodified	_AIEGFNQSSHQK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.32839	1344.64223	2.3153	0.0015589	-1.0282	-0.0006923	1.2871	0.00086664	673.328144742031	2.969	0.0798	2.969	2.9424	3.0222	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	402.806909300014	0	6.53020133974383						97	10	2	NaN	NaN	NaN	0.047914	1	13730	24.689	13.987	1	21463			781	1880	669	673	781	781		
AIEHADGGVAAGVAVLDNPYPV	22	Unmodified	_AIEHADGGVAAGVAVLDNPYPV_			0	0	0	P48637	P48637	P48637	GSS	Glutathione synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.04202	2134.06948	0.61473	0.00065656	1.9406	0.0020727	2.5554	0.0027292	1068.5459600643	14.941	0.2128	14.941	14.861	15.074	0	93	46	1.26131825079847	0.0297205829948761	1.26131825079847	508.457065455634	0	11.9808306933155						533	25	3	NaN	NaN	NaN	9.6581E-06	1	33804	50.519	45.189	1	109620			782	1112	670	674	782	782		
AIELATTLDESLTNR	15	Unmodified	_AIELATTLDESLTNR_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.933416	1645.85228	1.9864	0.0016367	0.58686	0.00048354	2.5733	0.0021202	823.933733058364	14.294	0.12411	14.294	14.258	14.382	0	261	34	1.14997238118939	0.0219602499318536	1.14997238118939	464.459889987262	0	8.86947846251087						257	15	3	NaN	NaN	NaN	0.00025078	1	22925	82.437	63.626	1	56933			783	2785	671	675	783	783		
AIELLQEFSDQHPENAAEIK	20	Unmodified	_AIELLQEFSDQHPENAAEIK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.38149	2281.12264	0.98965	0.0007535	0.27207	0.00020715	1.2617	0.00096066	761.716125127064	14.072	0.079786	14.072	14.036	14.116	0	489	46	0.997481546940468	0.0302528786941803	0.997481546940468	602.897467843549	0	18.2854349693428						346	10	4	NaN	NaN	NaN	1.4187E-05	1	35469	61.503	57.431	1	83479			784	383	672	676	784	784		
AIELWYHDPACTTPVLK	17	Unmodified	_AIELWYHDPACTTPVLK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.50877	2013.00298	1.1514	0.0011601	0.12189	0.00012281	1.2733	0.0012829	1008.01003380901	13.141	0.097549	13.141	13.088	13.185	0	159	25	1.21767724410157	0.0158934053770952	1.21767724410157	491.055545881294	0	6.40937070243143						171	12	3	NaN	NaN	NaN	0.068416	1	31854	35.45	29.547	1	33896			785	3235	673	677	785	785		
AIENCEYAFNLK	12	Unmodified	_AIENCEYAFNLK_			0	0	0	Q15796	Q15796	Q15796	SMAD2	Mothers against decapentaplegic homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.347934	1470.68131	1.6045	0.0011815	2.5644	0.0018883	4.1689	0.0030698	736.349773325494	10.498	0.079852	10.498	10.454	10.534	0	441	37	1.02971785871157	0.0241471979634897	1.02971785871157	416.30378245806	0	9.76245071688146						214	10	3	NaN	NaN	NaN	0.0030634	1	17599	70.389	53.737	1	54455			786	1868	674	678	786	786		
AIENELLAR	9	Unmodified	_AIENELLAR_			0	0	0	P48637	P48637	P48637	GSS	Glutathione synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.790381	1027.56621	0.15561	8.0108E-05	-0.011015	-5.6706E-06	0.1446	7.4437E-05	514.790372924364	8.547	0.088679	8.547	8.4938	8.5825	0	681	46	0.867820189810857	0.0305265242845556	0.867820189810857	352.256841620043	0	12.3910196563401						165	11	2	NaN	NaN	NaN	0.01291	1	4931	46.447	26.959	1	46245			787	1112	675	679	787	787		
AIEPPPLDAVIEAEHTLR	18	Unmodified	_AIEPPPLDAVIEAEHTLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.030922	1970.04729	1.085	0.0010698	-9.3494	-0.0092188	-8.2645	-0.008149	986.025598311097	16.307	0.2394	16.307	16.156	16.395	0	180	82	1.203763835057	0.0537176332857705	1.203763835057	485.517173495771	0	21.6660716331909						694	28	4	NaN	NaN	NaN	0.0025483	1	31117	42.495	38.188	1	198040			788	1575	676	680	788	788		
AIEPPPLDAVIEAEHTLR	18	Unmodified	_AIEPPPLDAVIEAEHTLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.030922	1970.04729	0.47053	0.00046396	0.7991	0.00078794	1.2696	0.0012519	986.533246288847	16.236	0.17733	16.236	16.174	16.351	0	114	37	1.24744674793813	0.0237943897908051	1.24744674793813	503.135879698251	0	9.59705194555818						402	21	3	NaN	NaN	NaN	0.008923	1	31119	44.571	44.052	1	84140			789	1575	676	680	789	789		
AIEPPPLDAVIEAEHTLR	18	Unmodified	_AIEPPPLDAVIEAEHTLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.689707	1970.04729	0.78139	0.00051391	0.93705	0.00061629	1.7184	0.0011302	658.359311107817	16.404	0.66505	16.404	16.085	16.75	0	498	163	0.991429299781895	0.109250215557735	0.991429299781895	599.811418647039	0	66.0960159192349						2023	51	6	NaN	NaN	NaN	0.012565	1	31120	54.556	46.189	1	2748100			790	1575	676	680	790	790		
AIEQADLLQEEDESPR	16	Unmodified	_AIEQADLLQEEDESPR_			0	0	0	P61966	P61966	P61966	AP1S1	AP-1 complex subunit sigma-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.939427	1841.8643	2.5341	0.0023363	-0.96586	-0.00089047	1.5682	0.0014458	921.938809510567	9.5672	0.19506	9.5672	9.5228	9.7179	0	312	70	1.11600111266355	0.0460117710123258	1.11600111266355	450.33866554551	0	18.5670778657399						701	23	4	NaN	NaN	NaN	1.7655E-08	1	28278	133.13	106.66	1	221210			791	1358	677	681	791	791		
AIEQSFDQDESGNR	14	Unmodified	_AIEQSFDQDESGNR_			0	0	0	P32856	P32856	P32856	STX2	Syntaxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.350248	1594.68594	1.4652	0.0011697	-0.56407	-0.00045033	0.90109	0.00071938	798.350089022969	5.3721	0.053183	5.3721	5.3455	5.3987	0	459	31	1.01763759082241	0.02014212547595	1.01763759082241	411.121543110773	0	8.13733865757769						91	7	2	NaN	NaN	NaN	0.00091265	1	21409	42.941	39.866	1	18926			792	941	678	682	792	792		
AIFAVLTSVLTK	12	Unmodified	_AIFAVLTSVLTK_			0	0	0	Q9Y5Q9	Q9Y5Q9	Q9Y5Q9	GTF3C3	General transcription factor 3C polypeptide 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.889564	1261.76457	-0.031206	-1.9719E-05	0.24801	0.00015672	0.21681	0.000137	631.889670658952	19.029	0.062075	19.029	19.002	19.064	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	397.355457790718	0	7.35901139486617						114	8	3	NaN	NaN	NaN	0.00062481	1	11284	65.933	59.242	1	23653			793	3441	679	683	793	793		
AIFEIVLNR	9	Unmodified	_AIFEIVLNR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.818941	1073.62333	-0.051956	-2.7943E-05	-1.5171	-0.00081592	-1.5691	-0.00084387	537.818006136827	14.666	0.12413	14.666	14.622	14.746	0	657	34	0.884090832094921	0.0223581674407913	0.884090832094921	358.657701662891	0	9.07025461253437						303	15	4	NaN	NaN	NaN	0.0062391	1	6053	60.589	45.007	1	107490			794	350	680	684	794	794		
AIFENTLSTYPK	12	Unmodified	_AIFENTLSTYPK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.361367	1382.70818	1.9262	0.0013336	-2.7676	-0.0019161	-0.84137	-0.00058253	692.359491380982	10.853	0.19511	10.853	10.764	10.959	0	471	73	1.00957851518677	0.0483077589579812	1.00957851518677	408.403637324335	0	19.5418822534835						556	23	2	NaN	NaN	NaN	0.022802	1	14912	41.824	33.35	1	170420			795	1766	681	685	795	795		
AIFLADGNVFTTGFSR	16	Unmodified	_AIFLADGNVFTTGFSR_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.441212	1714.86787	1.4335	0.0012306	1.0454	0.00089742	2.4789	0.002128	858.442218828792	17.016	0.26598	17.016	16.945	17.211	0	333	133	1.10198982404297	0.0879439561358755	1.10198982404297	444.930757448345	0	35.5075611070374						924	31	2	NaN	NaN	NaN	9.864E-08	1	24909	142.08	125.09	1	495210			796	3280	682	686	796	796		
AIFTGHSAVVEDVAWHLLHESLFGSVADDQK	31	Unmodified	_AIFTGHSAVVEDVAWHLLHESLFGSVADDQK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	845.42429	3377.66805	0.81233	0.00068677	-0.014161	-1.1972E-05	0.79817	0.00067479	845.92518752274	19.898	0.044328	19.898	19.889	19.933	0	471	37	1.00957851518677	0.024187253928307	1.00957851518677	812.010921542662	0	19.453974164929						199	6	6	NaN	NaN	NaN	2.4881E-10	1	38596	63.95	62.398	1	60078			797	1890	683	687	797	797		
AIGAVPLIQGEYMIPCEK	18	Unmodified	_AIGAVPLIQGEYMIPCEK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.012829	1988.01111	1.7596	0.0017509	-3.0192	-0.0030042	-1.2596	-0.0012533	995.51211821869	15.819	0.25719	15.819	15.721	15.978	-1.7764E-15	147	148	1.22562176648663	0.0974074983054407	1.22562176648663	494.301916445513	0	39.2851321713759						2794	30	6	NaN	NaN	NaN	2.6283E-05	1	31426	77.696	74.802	1	1102800			798	557	684	688	798	798		
AIGAVPLIQGEYMIPCEK	18	Oxidation (M)	_AIGAVPLIQGEYM(Oxidation (M))IPCEK_	AIGAVPLIQGEYM(1)IPCEK	AIGAVPLIQGEYM(42)IPCEK	0	1	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.01029	2004.00602	1.5693	0.001574	-0.52536	-0.00052695	1.0439	0.0010471	1003.51157261929	14.48	0.14188	14.48	14.435	14.577	0	126	79	1.23951419873743	0.0516252723298358	1.23951419873743	499.877157475788	0	20.8196843670191						794	17	4	NaN	NaN	NaN	0.0079275	1	31706	42.446	41.077	1	176850			799	557	684	689	799	799	134	
AIGDHFYK	8	Unmodified	_AIGDHFYK_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.74016	949.465767	0.46946	0.00022334	0.94305	0.00044865	1.4125	0.00067199	475.740399471327	4.7071	0.20395	4.7071	4.645	4.8489	0	717	40	0.84338031290707	0.0265004542713385	0.84338031290707	342.708400691831	0	10.768485061778						447	24	4	NaN	NaN	NaN	0.020524	1	3231	47.349	32.814	1	146920			800	166	685	690	800	800		
AIGIGAYLVR	10	Unmodified	_AIGIGAYLVR_			0	0	0	Q13085;O00763	Q13085	Q13085	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.813659	1031.61277	0.63562	0.0003285	-1.4733	-0.0007614	-0.83764	-0.0004329	516.812819157259	12.768	0.079829	12.768	12.724	12.804	0	627	31	0.90440375274676	0.0203016545312636	0.90440375274676	367.087446047241	0	8.24021626378823						156	10	3	NaN	NaN	NaN	0.056796	1	5045	27.736	21.046	1	36752			801	1625	686	691	801	801		
AIGPHDVLATLLNNLK	16	Unmodified	_AIGPHDVLATLLNNLK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.661311	1687.9621	-0.31204	-0.00017589	-0.0057079	-3.2173E-06	-0.31775	-0.0001791	563.661409070644	19.437	0.14191	19.437	19.348	19.49	0	648	22	0.890187667287968	0.0142239758453706	0.890187667287968	539.189054332714	0	8.61550026668226						228	17	3	NaN	NaN	NaN	0.00193	1	24162	75.474	74.593	1	54814			802	343	687	692	802	802		
AIGPHDVLATLLNNLK	16	Unmodified	_AIGPHDVLATLLNNLK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.661311	1687.9621	-1.0037	-0.00056575	1.2982	0.00073175	0.29451	0.000166	563.661772150137	19.419	0.097575	19.419	19.375	19.472	0	699	19	0.85560534332665	0.0122216343597983	0.85560534332665	518.242442578804	0	7.40267658719938						86	12	2	NaN	NaN	NaN	0.0016799	1	24163	73.655	64.393	1	16553			803	343	687	692	803	803		
AIGPHDVLATLLNNLK	16	Unmodified	_AIGPHDVLATLLNNLK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.988329	1687.9621	1.6191	0.0013682	0.12803	0.00010818	1.7472	0.0014763	844.988735963962	19.437	0.088723	19.437	19.392	19.481	0	330	31	1.10399226369747	0.0200230200251346	1.10399226369747	445.796211884689	0	8.0853704968917						204	11	3	NaN	NaN	NaN	0.0097956	1	24164	45.183	30.821	1	47067			804	343	687	692	804	804		
AIGSASEGAQSSLQEVYHK	19	Unmodified	_AIGSASEGAQSSLQEVYHK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.481793	1960.94903	1.2677	0.0012442	-0.21818	-0.00021414	1.0495	0.0010301	981.983020930443	7.4649	0.088656	7.4649	7.4294	7.5181	0	72	82	1.27517645957152	0.0534531335851651	1.27517645957152	514.33687277186	0	21.5600886933628						680	11	4	NaN	NaN	NaN	2.0868E-26	1	30941	236.75	216.86	1	208950			805	872	688	693	805	805		
AIGSASEGAQSSLQEVYHK	19	Unmodified	_AIGSASEGAQSSLQEVYHK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.656954	1960.94903	1.7292	0.001132	2.0966	0.0013726	3.8258	0.0025046	654.993288708126	7.4649	0.25713	7.4649	7.4205	7.6777	0	558	106	0.951016745717027	0.070923047443334	0.951016745717027	575.380609969826	0	42.9095980513961						1085	30	5	NaN	NaN	NaN	1.0292E-10	1	30942	139.7	110.57	1	1043600			806	872	688	693	806	806		
AIGTDEDLAHSSIR	14	Unmodified	_AIGTDEDLAHSSIR_			0	0	0	Q9Y697	Q9Y697	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.870619	1483.72669	2.3034	0.0017111	-1.0099	-0.00075019	1.2935	0.00096092	742.870155957753	6.1347	0.1064	6.1347	6.0993	6.2057	0	396	37	1.05987478976334	0.0241072414200156	1.05987478976334	428.46080049508	0	9.74549829499614						293	13	4	NaN	NaN	NaN	9.3463E-06	1	18025	112.7	100.68	1	94269			807	3455	689	694	807	807		
AIGVLTSGGDAQGMNAAVR	19	Unmodified	_AIGVLTSGGDAQGMNAAVR_			0	0	0	P17858;Q01813	P17858;Q01813	Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.457067	1786.89958	2.6087	0.0023334	-2.9722	-0.0026585	-0.36354	-0.00032517	894.454862303116	9.9484	0.19499	9.9484	9.8776	10.073	0	303	70	1.12200181823275	0.0459801174919154	1.12200181823275	452.864210687747	0	18.5585702954598						1007	23	5	NaN	NaN	NaN	5.4914E-15	1	26898	188.19	169.38	1	426180			808	1521;744	690	695	808	808		
AIGVLTSGGDAQGMNAAVR	19	Oxidation (M)	_AIGVLTSGGDAQGM(Oxidation (M))NAAVR_	AIGVLTSGGDAQGM(1)NAAVR	AIGVLTSGGDAQGM(61)NAAVR	0	1	0	P17858;Q01813	P17858;Q01813	Q01813	PFKL;PFKP	ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.454524	1802.8945	3.4245	0.0030905	-2.3042	-0.0020795	1.1203	0.001011	902.452327204196	7.6865	0.097613	7.6865	7.6511	7.7487	0	297	49	1.12600091227925	0.0320015698461229	1.12600091227925	454.447279789465	0	12.9156435016781						282	12	3	NaN	NaN	NaN	0.00017876	1	27287	61.067	59.083	1	62917			809	1521;744	690	696	809	809	244	
AIGYLIPLMDAEYANYYTR	19	Unmodified	_AIGYLIPLMDAEYANYYTR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.051	2236.08744	-0.087643	-9.8077E-05	1.2144	0.001359	1.1268	0.0012609	1119.55352753559	19.304	0.097522	19.304	19.268	19.366	0	81	43	1.2692388538616	0.0277145246283468	1.2692388538616	511.499015959644	0	11.1688607956327						269	12	4	NaN	NaN	NaN	0.020269	1	35053	27.467	25.078	1	49054			810	343	691	697	810	810		
AIHVLDVEQGQLER	14	Unmodified	_AIHVLDVEQGQLER_			0	0	0	Q9H6Y2	Q9H6Y2	Q9H6Y2	WDR55	WD repeat-containing protein 55	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.289766	1605.84747	-1.2171	-0.00065274	4.9489	0.0026541	3.7318	0.0020013	536.6275080861	9.3366	0.088671	9.3366	9.31	9.3987	0	750	46	0.820941264895493	0.0306114701428865	0.820941264895493	497.453050044967	0	18.5491579484408						247	11	4	NaN	NaN	NaN	0.0001079	1	21785	72.922	65.365	1	52911			811	2911	692	698	811	811		
AIIASNIMYIVGQYPR	16	Unmodified	_AIIASNIMYIVGQYPR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.662435	1807.96548	-1.1155	-0.00067341	-0.46297	-0.00027948	-1.5785	-0.00095288	603.997040613327	17.92	0.11524	17.92	17.867	17.982	0	657	22	0.884090832094921	0.0142279235023115	0.884090832094921	535.206977434456	0	8.61323707519591						214	14	4	NaN	NaN	NaN	0.00030637	1	27443	77.358	65.34	1	48737			812	135	693	699	812	812		
AIIASNIMYIVGQYPR	16	Unmodified	_AIIASNIMYIVGQYPR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.990014	1807.96548	0.30495	0.00027598	1.6755	0.0015163	1.9805	0.0017923	905.493425166213	17.912	0.10639	17.912	17.858	17.965	0	123	46	1.24149774378079	0.0297654224880275	1.24149774378079	501.05037205078	0	12.0128901454598						342	13	3	NaN	NaN	NaN	1.7615E-06	1	27444	96.957	92.71	1	76959			813	135	693	699	813	813		
AIIEEYLHLNDMK	13	Unmodified	_AIIEEYLHLNDMK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.905616	1587.79668	2.1578	0.0017153	2.4624	0.0019574	4.6203	0.0036727	794.907692829641	13.735	0.16845	13.735	13.691	13.859	0	348	61	1.09197348738011	0.0400957372685233	1.09197348738011	441.1694187768	0	16.1991232485155						628	20	5	NaN	NaN	NaN	1.0091E-07	1	21204	103.76	82.399	1	229650			814	1544	694	700	814	814		
AIIIFVPVPQLK	12	Unmodified	_AIIIFVPVPQLK_			0	0	0	P62081	P62081	P62081	RPS7	40S ribosomal protein S7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.431399	1336.84824	1.0589	0.00070888	-1.2462	-0.00083425	-0.18729	-0.00012537	669.43064185043	18.47	0.27492	18.47	18.355	18.63	0	531	136	0.969216233931596	0.0907462876414535	0.969216233931596	392.209052043951	0	36.7219555413206						2129	32	5	NaN	NaN	NaN	0.00065592	1	13513	65.156	63.782	1	1538300			815	1364	695	701	815	815		
AIIPSHLAYGK	11	Unmodified	_AIIPSHLAYGK_			0	0	0	Q9NYL4	Q9NYL4	Q9NYL4	FKBP11	Peptidyl-prolyl cis-trans isomerase FKBP11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.337498	1168.66044	0.94633	0.00055392	0.52707	0.00030851	1.4734	0.00086243	585.338003735062	7.5624	0.14187	7.5624	7.5003	7.6422	0	576	37	0.938871150116794	0.0242979231728671	0.938871150116794	380.4883334136	0	9.84701286465747						323	17	3	NaN	NaN	NaN	0.070273	1	8582	22.044	15.353	1	108870			816	3118	696	702	816	816		
AIIYQYMEEIYHR	13	Unmodified	_AIIYQYMEEIYHR_			0	0	0	P37268	P37268	P37268	FDFT1	Squalene synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.951986	1727.83413	-1.2471	-0.00071951	0.00783	4.5175E-06	-1.2393	-0.00071499	577.286540580455	14.666	0.07097	14.666	14.639	14.71	0	714	28	0.845418525735192	0.0183388204791043	0.845418525735192	511.976139527263	0	11.1057875201047						188	9	4	NaN	NaN	NaN	0.00016981	1	25257	48.701	45.196	1	43887			817	1000	697	703	817	817		
AILCAIQNLEER	12	Unmodified	_AILCAIQNLEER_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.377026	1428.7395	1.2116	0.00086672	-0.18471	-0.00013213	1.0269	0.00073459	715.376502598674	13.123	0.079829	13.123	13.096	13.176	0	387	34	1.06589869032374	0.0220845924039434	1.06589869032374	431.049200213687	0	8.93100439955867						161	10	3	NaN	NaN	NaN	0.00073172	1	16355	62.271	39.885	1	32374			818	3048	698	704	818	818		
AILCLLLGGVER	12	Unmodified	_AILCLLLGGVER_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.384122	1312.75369	0.19275	0.00012671	-0.88547	-0.00058209	-0.69272	-0.00045538	657.38382424985	18.036	0.14188	18.036	17.974	18.115	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	391.464694701315	0	8.9980302318445						396	17	4	NaN	NaN	NaN	0.0060495	1	12746	47.334	38.072	1	168080			819	835	699	705	819	819		
AILILDNDGDR	11	Unmodified	_AILILDNDGDR_			0	0	0	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.822409	1213.63027	1.13	0.00068682	-1.7988	-0.0010934	-0.66884	-0.00040654	608.320073258248	10.676	0.2128	10.676	10.613	10.826	0	555	55	0.953040030838688	0.0364166254573408	0.953040030838688	386.063457849515	0	14.7518759887761						788	25	6	NaN	NaN	NaN	0.06576	1	9835	16.288	0.70582	1	243480			820	1353	700	706	820	820		
AILILDNDGDRLFAK	15	Unmodified	_AILILDNDGDRLFAK_			0	0	1	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.464687	1672.91482	2.0119	0.0016849	0.66673	0.00055836	2.6787	0.0022433	837.966324307637	14.01	0.133	14.01	13.966	14.099	0	255	43	1.15396378101328	0.0279398051055391	1.15396378101328	466.00902470202	0	11.2830242524283						420	16	4	NaN	NaN	NaN	5.1665E-05	1	23715	103.69	76.097	1	202470			821	1353	701	707	821	821		
AILLLQTAEDQDTYNVAIR	19	Unmodified	_AILLLQTAEDQDTYNVAIR_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.07078	2146.127	0.44996	0.00048328	-0.085592	-9.1932E-05	0.36436	0.00039135	1074.07050074035	15.952	0.07982	15.952	15.916	15.996	0	120	28	1.2434810169581	0.0178445681915995	1.2434810169581	501.248393912212	0	7.19316260088715						151	10	3	NaN	NaN	NaN	0.0017724	1	33975	39.82	36.735	1	27741			822	2072	702	708	822	822		
AILPCQDTPSVK	12	Unmodified	_AILPCQDTPSVK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.84757	1327.68059	2.5702	0.0017088	-0.31287	-0.00020801	2.2573	0.0015008	664.847738321281	7.7221	0.26612	7.7221	7.6511	7.9172	8.8818E-16	504	58	0.987393073566096	0.0383627278189489	0.987393073566096	399.592829178568	0	15.5251959473615						855	31	3	NaN	NaN	NaN	0.0071173	1	13218	63.212	48.064	1	316710			823	614	703	709	823	823		
AILQQLGLNSTCDDSILVK	19	Unmodified	_AILQQLGLNSTCDDSILVK_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.5539	2087.09326	0.56534	0.00059053	-1.4512	-0.0015159	-0.88587	-0.00092534	1045.05421230123	15.925	0.11529	15.925	15.881	15.996	0	126	40	1.23951419873743	0.0257931613515507	1.23951419873743	499.740238270385	0	10.3991391245862						302	14	4	NaN	NaN	NaN	0.00048336	1	33144	69.327	66.433	1	63439			824	765	704	710	824	824		
AILVDLEPGTMDSVR	15	Unmodified	_AILVDLEPGTMDSVR_			0	0	0	P07437;Q9BVA1;Q13885;Q13509	P07437;Q9BVA1;Q13509	P07437	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.42163	1614.82871	1.9601	0.0015846	-0.50909	-0.00041156	1.451	0.001173	808.421458714789	13.974	0.13299	13.974	13.912	14.045	0	369	31	1.07793901817685	0.0200589169906749	1.07793901817685	435.436305903832	0	8.10285235766281						280	16	3	NaN	NaN	NaN	0.00089589	1	22042	57.003	49.446	1	78628			825	560;2761;1675	705	711	825	825		
AILVDLEPGTMDSVR	15	Unmodified	_AILVDLEPGTMDSVR_			0	0	0	P07437;Q9BVA1;Q13885;Q13509	P07437;Q9BVA1;Q13509	P07437	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.42163	1614.82871	3.2369	0.0026168	0.45451	0.00036743	3.6914	0.0029842	808.422708431328	14.302	0.4522	14.302	14.134	14.586	0	348	100	1.09197348738011	0.0661808190724855	1.09197348738011	441.105563088666	0	26.7339159787457						3461	52	6	NaN	NaN	NaN	3.0964E-06	1	22043	119.43	90.782	1	6539400			826	560;2761;1675	705	711	826	826		
AILVDLEPGTMDSVR	15	Oxidation (M)	_AILVDLEPGTM(Oxidation (M))DSVR_	AILVDLEPGTM(1)DSVR	AILVDLEPGTM(76)DSVR	0	1	0	P07437;Q9BVA1;Q13885;Q13509	P07437;Q9BVA1;Q13509	P07437	TUBB;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.419088	1630.82362	2.405	0.0019635	-0.70482	-0.00057543	1.7001	0.001388	816.420310130307	12.405	0.35466	12.405	12.281	12.635	0	369	103	1.07793901817685	0.0681534221810303	1.07793901817685	435.399982969476	0	27.5284578779982						2206	41	6	NaN	NaN	NaN	0.00068103	1	22519	76.255	65.468	1	2678800			827	560;2761;1675	705	712	827	827	137	
AIMEMPSFYSHGLPR	15	Unmodified	_AIMEMPSFYSHGLPR_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.281337	1734.82218	0.0036418	2.1096E-06	1.3968	0.00080915	1.4005	0.00081126	579.28307624871	13.105	0.14187	13.105	13.026	13.167	0	597	79	0.924688525662974	0.0527697014855355	0.924688525662974	559.963239487623	0	31.955725815295						686	17	4	NaN	NaN	NaN	0.0022791	1	25462	34.779	31.901	1	154570			828	1273	706	713	828	828		
AIMTYVSSFYHAFSGAQK	18	Unmodified	_AIMTYVSSFYHAFSGAQK_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.992621	2006.95603	-0.064589	-4.3274E-05	-0.23902	-0.00016014	-0.30361	-0.00020342	670.327070045896	17.087	0.17732	17.087	17.034	17.211	0	585	31	0.932794566565362	0.0202594899473871	0.932794566565362	564.265065612266	0	12.2553484273888						669	21	6	NaN	NaN	NaN	4.5511E-06	1	31752	69.327	60.952	1	366400			829	221;671	707	714	829	829		
AIMTYVSSFYHAFSGAQK	18	Unmodified	_AIMTYVSSFYHAFSGAQK_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.48529	2006.95603	0.79723	0.00080081	9.6651	0.0097084	10.462	0.010509	1004.99657577351	17.087	0.37245	17.087	16.883	17.255	0	177	103	1.2057522832638	0.0675655960535073	1.2057522832638	486.256541204318	0	27.2478961868143						1316	43	3	NaN	NaN	NaN	0.0025221	1	31757	47.27	42.176	1	425410			830	221;671	707	714	830	830		
AIMYEETTYSK	11	Unmodified	_AIMYEETTYSK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.310486	1334.60642	1.5636	0.001045	5.9024	0.0039447	7.466	0.0049896	668.314618792524	6.5072	0.133	6.5072	6.4806	6.6136	0	531	40	0.969216233931596	0.0262699700789047	0.969216233931596	392.215764114949	0	10.6307509377744						276	16	3	NaN	NaN	NaN	0.006683	1	13416	49.16	44.957	1	118830			831	1218	708	715	831	831		
AINCPEDIVFPALDILR	17	Unmodified	_AINCPEDIVFPALDILR_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.516593	1955.01863	1.1548	0.00113	-2.181	-0.0021341	-1.0262	-0.0010041	978.513288619971	19.978	0.070939	19.978	19.942	20.013	0	201	79	1.18983705239708	0.0517885022505284	1.18983705239708	479.925832052086	0	20.8891124908604						294	9	3	NaN	NaN	NaN	0.0034911	1	30797	33.456	29.72	1	91059			832	3330	709	716	832	832		
AINFNFGYAK	10	Unmodified	_AINFNFGYAK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.792924	1143.57129	-0.11742	-6.7259E-05	1.5498	0.00088772	1.4324	0.00082046	572.793421980061	12.068	0.25717	12.068	11.97	12.227	0	624	49	0.906433495720521	0.0324736460639303	0.906433495720521	367.436591047918	0	13.1636858798366						350	30	3	NaN	NaN	NaN	0.0078323	1	7886	53.878	39.343	1	88738			833	1101	710	717	833	833		
AINIGQLVDVK	11	Unmodified	_AINIGQLVDVK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.348063	1168.68157	1.292	0.00075625	-1.3107	-0.00076721	-0.018718	-1.0956E-05	585.347196789758	13.841	0.133	13.841	13.797	13.93	0	579	37	0.936845902828289	0.0243046547974741	0.936845902828289	379.667506735423	0	9.84973906718727						331	16	4	NaN	NaN	NaN	0.00080276	1	8586	66.664	41.813	1	118150			834	1766	711	718	834	834		
AINQIAAALFTIHK	14	Unmodified	_AINQIAAALFTIHK_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.296192	1509.86675	-0.84341	-0.00042533	-2.0389	-0.0010282	-2.8823	-0.0014535	504.294979141975	15.588	0.14187	15.588	15.544	15.686	0	732	34	0.833184998970724	0.0224390480115776	0.833184998970724	505.146231796921	0	13.6044222617562						381	17	4	NaN	NaN	NaN	0.024452	1	18813	39.702	28.22	1	203700			835	3340	712	719	835	835		
AINQQTGAFVEISR	14	Unmodified	_AINQQTGAFVEISR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.404629	1532.79471	1.6134	0.0012381	1.2826	0.00098431	2.896	0.0022224	767.406917418723	9.3898	0.24832	9.3898	9.2834	9.5317	0	426	73	1.03977710643793	0.0482278126940738	1.03977710643793	420.211820207639	0	19.4906166247849						525	29	4	NaN	NaN	NaN	7.2319E-09	1	19521	149.58	131.08	1	189330			836	2446	713	720	836	836		
AINVLLEGNPDTHSWEMVGK	20	Unmodified	_AINVLLEGNPDTHSWEMVGK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.54915	2209.08375	0.25318	0.0002799	1.1552	0.0012772	1.4084	0.0015571	1106.05099510774	13.957	0.053211	13.957	13.93	13.983	0	60	28	1.28308947459206	0.0178006298225881	1.28308947459206	517.119801070278	0	7.17413581442474						80	7	3	NaN	NaN	NaN	0.060998	1	34777	14.5	14.167	1	11341			837	1729	714	721	837	837		
AINVLLEGNPDTHSWEMVGK	20	Unmodified	_AINVLLEGNPDTHSWEMVGK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.368527	2209.08375	0.65308	0.00048156	1.3576	0.0010011	2.0107	0.0014826	737.704524730812	13.957	0.070931	13.957	13.93	14.001	0	525	34	0.973257487423603	0.0222253598495629	0.973257487423603	588.372004489005	0	13.4360944499832						195	9	3	NaN	NaN	NaN	1.3082E-05	1	34778	73.305	69.864	1	41930			838	1729	714	721	838	838		
AIPDLTAPVAAVQAAVSNLVR	21	Unmodified	_AIPDLTAPVAAVQAAVSNLVR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.59422	2075.17389	0.39682	0.00041214	-0.80983	-0.00084109	-0.41301	-0.00042895	1039.09527606153	20.164	0.04435	20.164	20.137	20.182	0	84	85	1.26725910986255	0.0555050694189332	1.26725910986255	510.945666774055	0	22.3790655619537						284	6	4	NaN	NaN	NaN	0.00073346	1	32951	58.045	52.963	1	81947			839	753	715	722	839	839		
AIPDLTAPVAAVQAAVSNLVR	21	Unmodified	_AIPDLTAPVAAVQAAVSNLVR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.731906	2075.17389	0.5043	0.00034934	0.14067	9.7447E-05	0.64497	0.00044679	693.066289244928	20.164	0.03547	20.164	20.146	20.182	0	471	58	1.00957851518677	0.0382885589296732	1.00957851518677	610.575331640174	0	23.1562471019747						173	5	4	NaN	NaN	NaN	0.036174	1	32952	13.062	12.664	1	56920			840	753	715	722	840	840		
AIPNNQVLGK	10	Unmodified	_AIPNNQVLGK_			0	0	0	O60869	O60869	O60869	EDF1	Endothelial differentiation-related factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.306198	1052.59784	0.40277	0.00021238	-1.4424	-0.0007606	-1.0396	-0.00054821	527.305735787506	5.2835	0.23058	5.2835	5.1859	5.4164	0	675	31	0.871889544407995	0.0203411270160542	0.871889544407995	353.797371071725	0	8.25406992098118						213	27	2	NaN	NaN	NaN	0.064807	1	5548	33.396	2.834	1	100740			841	289	716	723	841	841		
AIPQLQGYLR	10	Unmodified	_AIPQLQGYLR_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.835123	1157.65569	0.05644	3.2726E-05	-0.36964	-0.00021433	-0.3132	-0.0001816	579.835203842087	11.873	0.27491	11.873	11.784	12.059	0	594	43	0.926715457081489	0.0283750805572571	0.926715457081489	375.6037450627	0	11.5006029545749						687	32	4	NaN	NaN	NaN	0.026448	1	8301	34.931	9.6776	1	368040			842	1533	717	724	842	842		
AIQDGTIVLMGTYDDGATK	19	Unmodified	_AIQDGTIVLMGTYDDGATK_			0	0	0	Q92520	Q92520	Q92520	FAM3C	Protein FAM3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.98278	1967.95101	1.5864	0.0015626	-2.2258	-0.0021923	-0.63934	-0.00062974	985.482003000237	13.398	0.23942	13.398	13.363	13.602	0	192	40	1.1958073123591	0.0258675796217427	1.1958073123591	482.311618826006	0	10.4333148606192						388	28	4	NaN	NaN	NaN	1.9059E-05	1	31070	92.593	71.232	1	73746			843	2405	718	725	843	843		
AIQDHLLEVEQSK	13	Unmodified	_AIQDHLLEVEQSK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.9351	1508.78347	-1.5948	-0.0008037	0.45252	0.00022804	-1.1423	-0.00057566	503.935256623664	8.3342	0.10646	8.3342	8.2987	8.4051	0	795	31	0.790287188799094	0.0204573895443732	0.790287188799094	479.141111636172	0	12.4030561375543						257	13	4	NaN	NaN	NaN	0.0029401	1	18762	80.623	77.521	1	86910			844	667	719	726	844	844		
AIQDHLLEVEQSK	13	Unmodified	_AIQDHLLEVEQSK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.399012	1508.78347	2.0208	0.0015265	0.21445	0.00016199	2.2352	0.0016885	755.399390123905	8.3342	0.10646	8.3342	8.2987	8.4051	0	399	34	1.0578662689527	0.0220906848842135	1.0578662689527	427.583206317902	0	8.92892244489627						296	13	4	NaN	NaN	NaN	0.00013013	1	18764	112.95	93.627	1	110170			845	667	719	726	845	845		
AIQDPAFSDGIR	12	Unmodified	_AIQDPAFSDGIR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.327859	1288.64116	1.5321	0.0009887	-0.3175	-0.00020489	1.2146	0.0007838	645.327760898707	8.9464	0.23956	8.9464	8.8487	9.0883	0	537	37	0.965173861991602	0.0242609491796308	0.965173861991602	390.722697582088	0	9.82134295452954						403	28	2	NaN	NaN	NaN	0.0041929	1	12018	50.09	40.002	1	192610			846	2149	720	727	846	846		
AIQFYLEFK	9	Unmodified	_AIQFYLEFK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.813325	1157.6121	0.048568	2.816E-05	0.77887	0.0004516	0.82744	0.00047976	579.814263821264	15.225	0.17732	15.225	15.136	15.313	0	597	37	0.924688525662974	0.0243282375267269	0.924688525662974	374.782377790633	0	9.86039564099144						283	21	3	NaN	NaN	NaN	0.0011101	1	8292	56.378	35.103	1	75033			847	1503	721	728	847	847		
AIQINPAFADAHSNLASIHK	20	Unmodified	_AIQINPAFADAHSNLASIHK_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	530.282723	2117.10179	-0.31895	-0.00016913	6.0856	0.0032271	5.7666	0.0030579	530.288216217712	10.303	0.15073	10.303	10.241	10.392	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	686.562543044852	0	16.4254699476442						195	18	3	NaN	NaN	NaN	0.067544	1	33578	11.054	10.535	1	56761			848	161	722	729	848	848		
AIQLNSNSVQALLLK	15	Unmodified	_AIQLNSNSVQALLLK_			0	0	0	Q9UJX3	Q9UJX3	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.475054	1610.93556	1.2073	0.00097367	0.9351	0.00075413	2.1424	0.0017278	806.475798791565	15.677	0.07978	15.677	15.642	15.721	0	264	28	1.14797626962532	0.0179674763675075	1.14797626962532	463.737563595389	0	7.25815849603339						204	10	4	NaN	NaN	NaN	1.2987E-06	1	21933	63.908	38.052	1	50850			849	3253	723	730	849	849		
AIQLSGAEQLEALK	14	Unmodified	_AIQLSGAEQLEALK_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.911756	1469.80896	1.7117	0.0012597	0.8871	0.00065283	2.5988	0.0019125	735.912461824578	12.485	0.14186	12.485	12.449	12.591	0	354	46	1.08796502040166	0.0300697247632449	1.08796502040166	439.854919455748	0	12.1569316253482						375	17	4	NaN	NaN	NaN	0.00029138	1	17591	72.846	53.523	1	101160			850	2731	724	731	850	850		
AIQTLGYFPVGDGDFPHQK	19	Unmodified	_AIQTLGYFPVGDGDFPHQK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.52072	2089.02689	1.2727	0.0013306	0.23915	0.00025004	1.5118	0.0015807	1046.02215020343	13.46	0.14186	13.46	13.398	13.54	0	126	40	1.23951419873743	0.0257860906510312	1.23951419873743	499.737175315159	0	10.3962246801957						251	17	3	NaN	NaN	NaN	3.9467E-05	1	33172	62.711	51.739	1	39187			851	2013	725	732	851	851		
AISGLEQDQPAR	12	Unmodified	_AISGLEQDQPAR_			0	0	0	O75312	O75312	O75312	ZPR1	Zinc finger protein ZPR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.830766	1283.64698	2.2539	0.0014489	-1.9595	-0.0012596	0.29437	0.00018923	642.829651478505	5.1415	0.097515	5.1415	5.1149	5.2125	0	513	25	0.981336640919867	0.0161560731115115	0.981336640919867	397.282128882054	0	6.54058847135155						119	12	2	NaN	NaN	NaN	0.010266	1	11870	53.028	36.376	1	30893			852	317	726	733	852	852		
AISHEHSPSDLEAHFVPLVK	20	Unmodified	_AISHEHSPSDLEAHFVPLVK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	554.039193	2212.12767	1.0479	0.0005806	2.5266	0.0013999	3.5746	0.0019805	554.291279534369	9.913	0.14188	9.913	9.8243	9.9662	0	600	37	0.922661313351899	0.024331609289763	0.922661313351899	743.704359756134	0	19.6123145587854						428	17	4	NaN	NaN	NaN	0.00081815	1	34814	63.766	62.292	1	125210			853	905	727	734	853	853		
AISSASSPQSPGDALR	16	Unmodified	_AISSASSPQSPGDALR_			0	0	0	Q96KR1	Q96KR1	Q96KR1	ZFR	Zinc finger RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.389176	1542.7638	2.1851	0.0016877	-3.7112	-0.0028665	-1.5261	-0.0011788	772.386321394114	5.9396	0.088733	5.9396	5.8953	5.984	0	429	46	1.03776581230406	0.0301902523079756	1.03776581230406	419.374743602055	0	12.2002759879211						221	11	2	NaN	NaN	NaN	0.00018434	1	19815	41.87	36.719	1	60608			854	2579	728	735	854	854		
AITDGQAGFGNDTLSK	16	Unmodified	_AITDGQAGFGNDTLSK_			0	0	0	Q7Z739	Q7Z739	Q7Z739	YTHDF3	YTH domain-containing family protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.889009	1593.76346	2.1272	0.0016973	-0.5488	-0.00043788	1.5784	0.0012594	797.88839919625	8.1656	0.15961	8.1656	8.0858	8.2454	0	399	55	1.0578662689527	0.0361708486763277	1.0578662689527	427.375899022742	0	14.6129519629786						409	19	3	NaN	NaN	NaN	8.3368E-07	1	21393	126.63	114.61	1	110720			855	2150	729	736	855	855		
AITGASLADIMAK	13	Unmodified	_AITGASLADIMAK_			0	0	0	P83731	P83731	P83731	RPL24	60S ribosomal protein L24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.344663	1260.67477	1.4075	0.00088864	-0.058854	-3.7157E-05	1.3487	0.00085149	631.344777739587	13.141	0.28375	13.141	13.043	13.327	0	471	115	1.00957851518677	0.0767096409857797	1.00957851518677	408.794772181674	0	31.0609821219485						2052	33	4	NaN	NaN	NaN	0.00050981	1	11243	79.311	45.587	1	1065600			856	1481	730	737	856	856		
AITGFDDPFSGK	12	Unmodified	_AITGFDDPFSGK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.803685	1253.59282	0.8679	0.00054487	-0.056763	-3.5636E-05	0.81114	0.00050924	627.803626917647	12.485	0.11523	12.485	12.458	12.573	0	570	55	0.942920803299286	0.0364267103222841	0.942920803299286	381.827348527343	0	14.7506706493956						457	14	3	NaN	NaN	NaN	0.0073497	1	11019	50.297	29.022	1	125880			857	718	731	738	857	857		
AITHLNNNFMFGQK	14	Unmodified	_AITHLNNNFMFGQK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.608442	1633.8035	-0.65434	-0.00035701	-0.82401	-0.00044959	-1.4784	-0.0008066	545.608214972513	9.7622	0.16848	9.7622	9.7268	9.8952	0	780	67	0.800512323802183	0.0449624535592132	0.800512323802183	485.003167713446	0	27.2412200986625						740	20	5	NaN	NaN	NaN	1.1036E-11	1	22592	183.57	164.76	1	323850			858	704	732	739	858	858		
AITIAGVPQSVTECVK	16	Unmodified	_AITIAGVPQSVTECVK_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.950555	1671.88656	2.8887	0.0024177	0.96916	0.00081114	3.8579	0.0032289	836.951924483503	12.254	0.2749	12.254	12.174	12.449	0	330	70	1.10399226369747	0.0460561408828231	1.10399226369747	445.831112420141	0	18.5990981991107						1552	32	6	NaN	NaN	NaN	2.7813E-06	1	23677	99.589	87.007	1	1827400			859	1833	733	740	859	859		
AITIANQTNCPLYITK	16	Unmodified	_AITIANQTNCPLYITK_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.982386	1819.95022	2.0295	0.0018489	-1.0756	-0.00097987	0.95391	0.00086899	910.982502632269	11.42	0.12415	11.42	11.367	11.491	0	270	46	1.14398322290989	0.0299499175476563	1.14398322290989	461.671799685583	0	12.0867439816907						415	15	4	NaN	NaN	NaN	4.9224E-12	1	27727	97.084	66.735	1	135260			860	1889	734	741	860	860		
AITTGLQEYVEAVSFQHFIK	20	Unmodified	_AITTGLQEYVEAVSFQHFIK_			0	0	0	Q99598	Q99598	Q99598	TSNAX	Translin-associated protein X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.066954	2280.17903	0.91848	0.00069903	0.40905	0.00031132	1.3275	0.0010103	761.402129497001	18.337	0.18621	18.337	18.24	18.426	0	441	22	1.02971785871157	0.0140868363075159	1.02971785871157	622.383286457492	0	8.51438226761525						183	22	4	NaN	NaN	NaN	0.00018748	1	35462	46.823	43.382	1	35753			861	2656	735	742	861	861		
AITVFSPDGHLFQVEYAQEAVK	22	Unmodified	_AITVFSPDGHLFQVEYAQEAVK_			0	0	0	O14818;Q8TAA3	O14818	O14818	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.084785	2448.23253	2.1707	0.0017736	-1.2539	-0.0010246	0.91674	0.00074905	817.418316262182	15.508	0.33707	15.508	15.34	15.677	-1.7764E-15	396	106	1.05987478976334	0.070249872663233	1.05987478976334	640.344561391329	0	42.4428662072235						1404	39	6	NaN	NaN	NaN	4.3557E-17	1	36570	164.28	138.58	1	821730			862	121	736	743	862	862		
AIVAIENPADVSVISSR	17	Unmodified	_AIVAIENPADVSVISSR_			0	0	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.978158	1739.94176	2.8665	0.0024966	1.9744	0.0017196	4.8408	0.0042163	870.980264070711	13.504	0.29268	13.504	13.336	13.629	0	303	85	1.12200181823275	0.0560104915807189	1.12200181823275	452.958293692068	0	22.6117429428207						1811	34	6	NaN	NaN	NaN	9.4569E-19	1	25604	153.18	147.16	1	2260200			863	592	737	744	863	863		
AIVDALPPPCESACTVPTDVDK	22	Unmodified	_AIVDALPPPCESACTVPTDVDK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1178.06398	2354.1134	1.2035	0.0014178	-0.50836	-0.00059888	0.69513	0.00081891	1178.56504599809	12.032	0.38132	12.032	11.961	12.343	0	60	76	1.28308947459206	0.0494936361753218	1.28308947459206	516.92065062979	0	19.939593551662						2332	44	6	NaN	NaN	NaN	3.2374E-06	1	36087	89.636	84.294	1	631790			864	1822	738	745	864	864		
AIVDALPPPCESACTVPTDVDK	22	Unmodified	_AIVDALPPPCESACTVPTDVDK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.711743	2354.1134	0.79228	0.0006225	0.16327	0.00012828	0.95555	0.00075078	786.046226482433	12.041	0.25717	12.041	11.97	12.227	-1.7764E-15	540	58	0.963152256458504	0.0384158376205809	0.963152256458504	582.03895639063	0	23.2149318943304						880	30	4	NaN	NaN	NaN	0.00083485	1	36088	42.977	40.913	1	194680			865	1822	738	745	865	865		
AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK	32	Unmodified	_AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	913.682021	3650.69898	0.17759	0.00016226	-0.29402	-0.00026864	-0.11643	-0.00010638	914.182891058168	16.28	0.11528	16.28	16.236	16.351	0	492	34	0.995464410099171	0.0221915758833877	0.995464410099171	800.413103324796	0	17.8433582760839						288	14	3	NaN	NaN	NaN	0.00011326	1	38702	24.367	23.616	1	57538			866	1705;51	739	746	866	866		
AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK	32	Unmodified	_AIVDCGFEHPSEVQHECIPQAILGMDVLCQAK_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	913.682021	3650.69898	1.4376	0.0013135	1.0097	0.00092256	2.4473	0.0022361	914.184297373678	16.271	0.30147	16.271	16.209	16.51	0	279	58	1.13799159301878	0.0379626683497278	1.13799159301878	915.01350401707	0	30.5242625706717						1443	35	8	NaN	NaN	NaN	0.00024659	1	38703	44.654	44.584	1	504670			867	1705;51	739	746	867	867		
AIVEFLSNLAR	11	Unmodified	_AIVEFLSNLAR_			0	0	0	Q13112	Q13112	Q13112	CHAF1B	Chromatin assembly factor 1 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.853512	1231.69247	-0.24825	-0.00015314	-1.1317	-0.0006981	-1.38	-0.00085124	616.853073022986	16.714	0.12414	16.714	16.67	16.794	0	552	46	0.955063035883597	0.0303324855868733	0.955063035883597	386.819148220851	0	12.2852479860456						345	15	3	NaN	NaN	NaN	0.0068456	1	10376	61.48	51.966	1	80660			868	1628	740	747	868	868		
AIVFVVDSAAFQR	13	Unmodified	_AIVFVVDSAAFQR_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.890626	1421.7667	0.69284	0.00049322	2.3525	0.0016747	3.0453	0.0021679	711.892352892039	14.87	0.08868	14.87	14.834	14.923	-1.7764E-15	381	40	1.06991323971056	0.0260963753447068	1.06991323971056	432.693017774899	0	10.5538645394671						264	11	4	NaN	NaN	NaN	0.0027373	1	16158	65.933	52.659	1	62226			869	3439	741	748	869	869		
AIVNVIGMHK	10	Unmodified	_AIVNVIGMHK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.312969	1080.61138	0.75785	0.00041023	0.7168	0.00038802	1.4747	0.00079825	541.313875401264	7.6245	0.11541	7.6245	7.5801	7.6956	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.514775737729	0	7.40816843776946						167	14	3	NaN	NaN	NaN	0.0080773	1	6230	37.722	14.147	1	74670			870	343	742	749	870	870		
AIVQQWLEYR	10	Unmodified	_AIVQQWLEYR_			0	0	0	O43324	O43324	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.351137	1304.68772	0.85256	0.00055702	0.027333	1.7858E-05	0.87989	0.00057488	653.350893556017	13.425	0.15963	13.425	13.371	13.531	0	513	37	0.981336640919867	0.0242307604673273	0.981336640919867	397.213907234151	0	9.80784232356797						408	19	4	NaN	NaN	NaN	0.00087177	1	12504	69.716	55.721	1	141980			871	195	743	750	871	871		
AIVVDPVHGFMYWTDWGTPAK	21	Unmodified	_AIVVDPVHGFMYWTDWGTPAK_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.392784	2389.15652	-0.027984	-2.2314E-05	-0.64661	-0.00051561	-0.6746	-0.00053792	797.726892479902	18.86	0.097522	18.86	18.816	18.914	0	570	40	0.942920803299286	0.0263245737571987	0.942920803299286	569.763944056996	0	15.9067367238476						398	12	5	NaN	NaN	NaN	1.2249E-05	1	36293	22.456	21.03	1	85097			872	491	744	751	872	872		
AIWGYCDQLK	10	Unmodified	_AIWGYCDQLK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.302798	1252.59104	1.371	0.00086001	4.5529	0.0028561	5.9239	0.0037161	627.30496193404	10.684	0.16851	10.684	10.605	10.773	0	555	76	0.953040030838688	0.0505821658502509	0.953040030838688	385.928382318502	0	20.4829732320632						593	20	3	NaN	NaN	NaN	0.071761	1	10981	26.947	23.339	1	159300			873	2594	745	752	873	873		
AIWNVINWENVTER	14	Unmodified	_AIWNVINWENVTER_			0	0	0	P04179	P04179	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.444286	1742.87402	2.2673	0.0019781	-2.2667	-0.0019776	0.0006131	5.349E-07	872.442350141372	17.708	0.23053	17.708	17.575	17.805	0	330	97	1.10399226369747	0.0640560892447732	1.10399226369747	445.68182556424	0	25.8594518565754						1358	27	5	NaN	NaN	NaN	4.1584E-12	1	25685	183.08	148.3	1	612720			874	509	746	753	874	874		
AIWSQPELAYEEHHAHR	17	Unmodified	_AIWSQPELAYEEHHAHR_			0	0	0	Q8IYS1	Q8IYS1	Q8IYS1	PM20D2	Peptidase M20 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	519.252694	2072.98167	-0.17372	-9.0202E-05	0.48553	0.00025211	0.31182	0.00016191	519.503750137208	7.6422	0.097658	7.6422	7.5979	7.6956	0	756	22	0.816857749704129	0.0142932978262608	0.816857749704129	658.697433335103	0	11.5258239215608						159	12	4	NaN	NaN	NaN	0.040688	1	32910	32.61	25.404	1	31808			875	2226	747	754	875	875		
AIYDTPCIQAESEK	14	Unmodified	_AIYDTPCIQAESEK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.879795	1623.74504	2.6464	0.0021512	-0.936	-0.00076086	1.7104	0.0013903	812.878982623551	8.3785	0.30147	8.3785	8.2544	8.5559	0	384	94	1.06790610341098	0.0622813966204998	1.06790610341098	431.363338065879	0	25.1575593208165						1388	35	4	NaN	NaN	NaN	1.036E-05	1	22295	121.96	117.98	1	466830			876	64	748	755	876	876		
AIYFDGDFGQIVR	13	Unmodified	_AIYFDGDFGQIVR_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.877716	1499.74088	0.8722	0.00065492	1.2587	0.00094515	2.1309	0.0016001	750.879039928052	15.296	0.11527	15.296	15.251	15.367	-1.7764E-15	429	34	1.03776581230406	0.0221272927649854	1.03776581230406	419.481707259822	0	8.944209219502						207	14	2	NaN	NaN	NaN	0.028621	1	18517	36.514	31.986	1	79361			877	2612	749	756	877	877		
AIYHDLEQSIR	11	Unmodified	_AIYHDLEQSIR_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.848958	1343.68336	2.1646	0.0014565	-2.5296	-0.001702	-0.36498	-0.00024558	673.347581163254	7.8463	0.19512	7.8463	7.7132	7.9083	0	444	76	1.02770517576159	0.0503727387379672	1.02770517576159	415.855909178519	0	20.3830841371075						556	23	4	NaN	NaN	NaN	0.0057931	1	13713	64.064	37.118	1	128660			878	3294	750	757	878	878		
AIYHLEAFVAK	11	Unmodified	_AIYHLEAFVAK_			0	0	0	P40938	P40938	P40938	RFC3	Replication factor C subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.350606	1260.68666	1.2642	0.00079812	-3.9085	-0.0024677	-2.6444	-0.0016695	631.347242299257	9.9928	0.15958	9.9928	9.9307	10.09	0	513	46	0.981336640919867	0.0302737974651172	0.981336640919867	397.359153652517	0	12.2583525744139						276	19	3	NaN	NaN	NaN	0.0060222	1	11244	50.834	41.32	1	68957			879	1025	751	758	879	879		
ALAAAGYDVEK	11	Unmodified	_ALAAAGYDVEK_			0	0	0	P10412;P16402;Q02539;P22492	P10412	P10412	HIST1H1E;HIST1H1D;HIST1H1A;HIST1H1T	Histone H1.4;Histone H1.3;Histone H1.1;Histone H1t	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.287671	1106.56079	2.3401	0.0012971	0.30699	0.00017016	2.6471	0.0014672	554.287336015303	5.9663	0.61193	5.9663	5.8953	6.5072	0	588	103	0.93076847747433	0.0689587560685413	0.93076847747433	377.4514576185	0	27.9646159314064						2171	70	5	NaN	NaN	NaN	0.00038012	1	6892	65.933	44.658	1	4802000			880	625	752	759	880	880		
ALAAPAAEEK	10	Unmodified	_ALAAPAAEEK_			0	0	0	Q01650	Q01650	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.763832	969.513111	0.86009	0.0004178	0.80405	0.00039058	1.6641	0.00080838	485.764419527094	3.4567	0.41689	3.4567	3.3769	3.7938	0	735	67	0.831145085810763	0.0448625236178622	0.831145085810763	337.636932028066	0	18.2245495954487						813	48	3	NaN	NaN	NaN	0.0062875	1	3620	60.892	57.076	1	376400			881	1518	753	760	881	881		
ALAAQNIVEDMEQR	14	Unmodified	_ALAAQNIVEDMEQR_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.393404	1586.77226	1.7347	0.001378	4.9819	0.0039576	6.7166	0.0053357	794.899545994018	13.221	0.19508	13.221	13.141	13.336	0	378	82	1.07192009927972	0.0542076750760496	1.07192009927972	433.070035304535	0	21.9006246591851						1081	23	5	NaN	NaN	NaN	2.3902E-11	1	21170	160.62	153.48	1	348040			882	1880	754	761	882	882		
ALADHSMAQTPR	12	Unmodified	_ALADHSMAQTPR_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.215433	1296.62447	-0.85372	-0.00036985	1.6435	0.00071199	0.78977	0.00034214	433.216159465834	3.5189	0.16859	3.5189	3.4567	3.6253	0	819	37	0.773912161060781	0.0245762306460847	0.773912161060781	469.909360127224	0	14.9223663851093						304	20	3	NaN	NaN	NaN	0.0037306	1	12250	57.888	53.348	1	76434			883	580	755	762	883	883		
ALADILSESLHSLATSLPR	19	Unmodified	_ALADILSESLHSLATSLPR_			0	0	0	O43156	O43156	O43156	TTI1	TELO2-interacting protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.368745	1993.0844	-0.27019	-0.00017977	-1.6321	-0.001086	-1.9023	-0.0012657	665.702281013739	20.057	0.026601	20.057	20.049	20.075	0	561	25	0.948993180460448	0.0161896439888687	0.948993180460448	574.091336352646	0	9.79388950733426						60	4	3	NaN	NaN	NaN	0.01091	1	31514	26.929	25.749	1	17546			884	184	756	763	884	884		
ALAEEVEQVHR	11	Unmodified	_ALAEEVEQVHR_			0	0	0	Q9BQE5	Q9BQE5	Q9BQE5	APOL2	Apolipoprotein L2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	427.557964	1279.65206	-0.89327	-0.00038193	-1.1195	-0.00047864	-2.0127	-0.00086056	427.557163872276	5.5405	0.062052	5.5405	5.5051	5.5671	0	879	16	0.732894652678068	0.0102693962804801	0.732894652678068	445.066194507908	0	6.23631391734909						59	8	2	NaN	NaN	NaN	0.00043862	1	11748	76.605	64.647	1	12008			885	2697	757	764	885	885		
ALAEGVLLR	9	Unmodified	_ALAEGVLLR_			0	0	0	P48637	P48637	P48637	GSS	Glutathione synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.292559	940.570566	-0.50709	-0.00023899	1.6477	0.00077657	1.1406	0.00053758	471.29273754301	9.6647	0.088676	9.6647	9.6292	9.7179	0	723	25	0.839303037468863	0.0163068367696065	0.839303037468863	341.097613819577	0	6.62719287640425						160	11	3	NaN	NaN	NaN	0.017821	1	3078	53.878	24.777	1	44789			886	1112	758	765	886	886		
ALAELFGLLVK	11	Unmodified	_ALAELFGLLVK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.365724	1172.7169	0.27557	0.00016186	-1.2084	-0.00070976	-0.93281	-0.0005479	587.365067296865	19.587	0.079826	19.587	19.561	19.641	0	585	52	0.932794566565362	0.0344244475580081	0.932794566565362	378.010482251402	0	13.950340717094						327	10	3	NaN	NaN	NaN	0.038294	1	8686	50.834	45.087	1	118160			887	2149	759	766	887	887		
ALAESWNAAFLESSAK	16	Unmodified	_ALAESWNAAFLESSAK_			0	0	0	Q15382	Q15382	Q15382	RHEB	GTP-binding protein Rheb	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.922852	1693.83115	2.0792	0.001763	1.4258	0.001209	3.505	0.0029719	848.425587277247	14.205	0.15074	14.205	14.161	14.311	1.7764E-15	345	40	1.09397730668811	0.0260496561958328	1.09397730668811	441.739665390567	0	10.5186518414382						377	18	4	NaN	NaN	NaN	9.2096E-07	1	24312	109.47	97.449	1	103650			888	1837	760	767	888	888		
ALAEYVVQQEGAK	13	Unmodified	_ALAEYVVQQEGAK_			0	0	0	Q8WVX9	Q8WVX9	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.369724	1404.72489	1.7763	0.0012494	-0.090925	-6.3954E-05	1.6854	0.0011855	703.369414085647	7.9438	0.11529	7.9438	7.8995	8.0148	0	480	43	1.00353128488872	0.0282184646673942	1.00353128488872	405.894349283561	0	11.4134113469349						285	14	3	NaN	NaN	NaN	0.0032225	1	15613	63.212	45.742	1	84205			889	2383	761	768	889	889		
ALAFHPIEPVLITASEDHTLK	21	Unmodified	_ALAFHPIEPVLITASEDHTLK_			0	0	0	O43815	O43815	O43815	STRN	Striatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.086237	2301.23688	2.0056	0.0015405	0.44131	0.00033896	2.4469	0.0018794	768.420535934365	14.045	0.17734	14.045	13.957	14.134	0	351	46	1.08996939197032	0.0300572976074456	1.08996939197032	658.764101838241	0	18.1662611885462						404	21	5	NaN	NaN	NaN	0.012145	1	35657	57.279	57.226	1	98273			890	234	762	769	890	890		
ALAGCDFLTISPK	13	Unmodified	_ALAGCDFLTISPK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.86322	1391.71189	1.8124	0.001263	1.1831	0.00082444	2.9955	0.0020875	696.86450875519	13.283	0.32805	13.283	13.203	13.531	0	414	109	1.04781950764076	0.0724617006096709	1.04781950764076	423.84605560504	0	29.3109698396377						1696	38	5	NaN	NaN	NaN	0.0072017	1	15203	35.845	21.851	1	1301100			891	1002	763	770	891	891		
ALALNCFAPINDQEGAEAK	19	Unmodified	_ALALNCFAPINDQEGAEAK_			0	0	0	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.49385	2030.97314	1.6622	0.0016897	0.64696	0.00065764	2.3092	0.0023473	1016.49417455489	13.274	0.13301	13.274	13.221	13.354	0	222	55	1.17589687683038	0.0358535635982185	1.17589687683038	474.177939762375	0	14.4578740322607						415	16	4	NaN	NaN	NaN	1.7699E-10	1	32169	100.56	75.815	1	116920			892	2632	764	771	892	892		
ALANESGLNFLAIK	14	Unmodified	_ALANESGLNFLAIK_			0	0	0	Q8NB90	Q8NB90	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.909016	1459.80348	0.56426	0.00041242	-0.22948	-0.00016773	0.33477	0.00024469	730.908710428918	15.171	0.070949	15.171	15.136	15.207	0	456	28	1.01965166402748	0.0181241570782431	1.01965166402748	412.262769415924	0	7.32790957344457						101	9	3	NaN	NaN	NaN	0.006299	1	17267	25.588	24.214	1	21936			893	2285	765	772	893	893		
ALAPEYAK	8	Unmodified	_ALAPEYAK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.737086	861.459619	0.19506	8.4215E-05	1.2413	0.00053592	1.4364	0.00062013	431.737673602521	4.0243	0.17735	4.0243	3.98	4.1573	0	741	49	0.827064408645228	0.0326590469526774	0.827064408645228	336.567881049421	0	13.2903630177505						347	21	2	NaN	NaN	NaN	0.019378	1	1738	34.931	17.536	1	113540			894	554	766	773	894	894		
ALAPLLLAFVTK	12	Unmodified	_ALAPLLLAFVTK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.902474	1255.7904	0.87246	0.00054869	-0.63096	-0.00039681	0.2415	0.00015188	628.902048245148	19.889	0.12415	19.889	19.845	19.969	0	528	55	0.971237000454584	0.0363863959780442	0.971237000454584	393.286243747132	0	14.7340648997133						317	15	4	NaN	NaN	NaN	0.00045793	1	11098	70.389	62.742	1	179890			895	1075	767	774	895	895		
ALAPLLLAFVTK	12	Unmodified	_ALAPLLLAFVTK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.902474	1255.7904	0.39357	0.00024752	-0.016018	-1.0074E-05	0.37755	0.00023744	628.90227215537	19.889	0.053194	19.889	19.862	19.915	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	403.913532939766	0	7.3512543013677						95	7	3	NaN	NaN	NaN	0.032882	1	11099	28.328	26.357	1	21732			896	1075	767	774	896	896		
ALAPSAECPIAEENLAR	17	Unmodified	_ALAPSAECPIAEENLAR_			0	0	0	O60318	O60318	O60318	MCM3AP	Germinal-center associated nuclear protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.45145	1810.88835	2.1447	0.0019441	1.9948	0.0018082	4.1396	0.0037523	906.454069340684	10.09	0.15959	10.09	9.9839	10.143	0	300	31	1.12400150285141	0.0200009774591183	1.12400150285141	453.625029203971	0	8.07200342791702						199	19	3	NaN	NaN	NaN	0.0015724	1	27494	41.87	38.785	1	39554			897	256	768	775	897	897		
ALAPTWEQLALGLEHSETVK	20	Unmodified	_ALAPTWEQLALGLEHSETVK_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.723188	2192.14773	0.441	0.00032269	0.46512	0.00034034	0.90611	0.00066302	732.058032415409	17.105	0.23054	17.105	17.043	17.273	0	480	55	1.00353128488872	0.0362808886855345	1.00353128488872	606.702961162663	0	21.9342664554474						1057	27	5	NaN	NaN	NaN	1.1324E-07	1	34594	95.677	79.575	1	680680			898	2294	769	776	898	898		
ALAQEDQGAGEVER	14	Unmodified	_ALAQEDQGAGEVER_			0	0	0	O15020	O15020	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.852426	1471.6903	2.0101	0.0014812	-0.95453	-0.00070335	1.0556	0.00077783	736.851615212565	4.1396	0.079813	4.1396	4.113	4.1928	0	504	25	0.987393073566096	0.0161493714671825	0.987393073566096	399.189792223643	0	6.52897454227019						160	10	3	NaN	NaN	NaN	7.497E-06	1	17636	112.73	105.17	1	38289			899	137	770	777	899	899		
ALASILLQDHIR	12	Unmodified	_ALASILLQDHIR_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.398618	1348.78268	0.6708	0.00045306	1.4785	0.00099856	2.1493	0.0014516	675.399623585098	12.015	0.14186	12.015	11.961	12.103	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.839885069117	0	8.14447324484428						296	17	3	NaN	NaN	NaN	2.6551E-07	1	13868	123.42	116.27	1	97502			900	2029	771	778	900	900		
ALASQLQDSLK	11	Unmodified	_ALASQLQDSLK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.327328	1172.6401	1.59	0.00093385	0.1154	6.7777E-05	1.7054	0.0010016	587.327447652769	8.9021	0.16862	8.9021	8.8487	9.0174	0	534	43	0.967195187796614	0.0283005258697965	0.967195187796614	391.951459830036	0	11.4686596548256						500	20	4	NaN	NaN	NaN	1.3422E-07	1	8680	123.5	78.014	1	237080			901	753	772	779	901	901		
ALAVHLLDLGLR	12	Unmodified	_ALAVHLLDLGLR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	430.934595	1289.78196	-2.7927	-0.0012035	0.72467	0.00031229	-2.068	-0.00089117	430.934838885442	15.065	0.053176	15.065	15.038	15.092	0	777	25	0.802556497112065	0.0163522499663766	0.802556497112065	487.32904104547	0	9.92942717892839						95	7	3	NaN	NaN	NaN	0.027342	1	12072	28.647	23.496	1	20612			902	2192	773	780	902	902		
ALAVHLLDLGLR	12	Unmodified	_ALAVHLLDLGLR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.898254	1289.78196	1.3272	0.00085725	0.62934	0.00040649	1.9566	0.0012637	645.898618806331	15.056	0.10632	15.056	15.021	15.127	-1.7764E-15	420	31	1.04379886199097	0.0201087800634321	1.04379886199097	422.547784862482	0	8.14038104609807						227	13	4	NaN	NaN	NaN	3.1901E-06	1	12073	94.804	62.664	1	71530			903	2192	773	780	903	903		
ALAVMVDHLESEK	13	Unmodified	_ALAVMVDHLESEK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.371409	1440.72827	1.4176	0.0010226	1.7358	0.0012521	3.1533	0.0022747	721.372875588046	9.2745	0.1153	9.2745	9.2391	9.3544	0	411	28	1.04982941439551	0.0180866667822672	1.04982941439551	424.516905492068	0	7.31366039833745						185	14	3	NaN	NaN	NaN	0.00050054	1	16696	64.906	58.215	1	38268			904	1713	774	781	904	904		
ALAVVYGPHEIR	12	Unmodified	_ALAVVYGPHEIR_			0	0	0	Q9NPD3	Q9NPD3	Q9NPD3	EXOSC4	Exosome complex component RRP41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.872237	1323.72992	1.1614	0.00076987	2.5139	0.0016664	3.6753	0.0024363	662.873882072545	7.5979	0.09755	7.5979	7.5713	7.6688	0	456	34	1.01965166402748	0.0221517485964946	1.01965166402748	412.660386141643	0	8.96497250191885						199	12	3	NaN	NaN	NaN	0.00041861	1	13111	90.263	79.561	1	57694			905	2985	775	782	905	905		
ALAYFEQLK	9	Unmodified	_ALAYFEQLK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.797675	1081.5808	0.79251	0.00042938	-0.57495	-0.00031151	0.21755	0.00011787	541.796747097229	11.341	0.16854	11.341	11.287	11.456	0	630	55	0.902373728295776	0.0365429879949484	0.902373728295776	366.040577657576	0	14.8233664340684						394	20	3	NaN	NaN	NaN	0.062529	1	6251	43.734	31.667	1	117820			906	209	776	783	906	906		
ALCDLGPWVK	10	Unmodified	_ALCDLGPWVK_			0	0	0	Q8N0U8	Q8N0U8	Q8N0U8	VKORC1L1	Vitamin K epoxide reductase complex subunit 1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.802434	1157.59032	0.18123	0.00010508	0.31256	0.00018122	0.49379	0.0002863	579.802757364844	12.52	0.16842	12.52	12.458	12.626	0	585	31	0.932794566565362	0.0202622968311691	0.932794566565362	378.067895634198	0	8.21244483861256						228	20	3	NaN	NaN	NaN	0.053802	1	8280	46.447	34.489	1	67309			907	2234	777	784	907	907		
ALCDPLEEVR	10	Unmodified	_ALCDPLEEVR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.297713	1200.58087	1.0331	0.00062119	1.1458	0.00068898	2.1789	0.0013102	601.297874316027	10.729	0.21281	10.729	10.631	10.844	0	582	40	0.934820374997243	0.0263318671085498	0.934820374997243	378.729188188721	0	10.6679817002745						502	25	3	NaN	NaN	NaN	0.005335	1	9471	81.163	60.93	1	174300			908	2420	778	785	908	908		
ALCELESGIPAAESQIVYAERPLTDNHR	28	Unmodified	_ALCELESGIPAAESQIVYAERPLTDNHR_			0	0	1	Q5TDH0	Q5TDH0	Q5TDH0	DDI2	Protein DDI1 homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	785.642379	3138.54041	1.2684	0.00099654	-1.191	-0.00093567	0.077484	6.0874E-05	785.892539009786	14.435	0.1064	14.435	14.391	14.498	0	471	22	1.00957851518677	0.0141063059336848	1.00957851518677	812.264705663611	0	11.3493445679217						213	13	4	NaN	NaN	NaN	0.067473	1	38404	2.3698	2.3657	1	38414			909	1999	779	786	909	909		
ALCIDQLDVFLQK	13	Unmodified	_ALCIDQLDVFLQK_			0	0	0	Q5T8P6	Q5T8P6	Q5T8P6	RBM26	RNA-binding protein 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.915984	1561.81741	0.62766	0.00049077	0.4073	0.00031847	1.035	0.00080925	781.916373738372	18.018	0.10642	18.018	17.982	18.089	0	381	40	1.06991323971056	0.0260927771036219	1.06991323971056	432.319007173161	0	10.543288065937						244	13	4	NaN	NaN	NaN	0.0029504	1	20408	67.548	61.171	1	58367			910	1995	780	787	910	910		
ALCQITDSTMLQAIER	16	Unmodified	_ALCQITDSTMLQAIER_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.309733	1848.90737	-0.089734	-5.5394E-05	-0.47122	-0.00029089	-0.56096	-0.00034629	617.309231672803	15.074	0.062051	15.074	15.047	15.109	0	633	25	0.900343422309015	0.0162458284325523	0.900343422309015	544.954114206065	0	9.83317123626034						161	8	4	NaN	NaN	NaN	8.7875E-05	1	28466	110.58	96.804	1	33746			911	3452	781	788	911	911		
ALCQITDSTMLQAIER	16	Unmodified	_ALCQITDSTMLQAIER_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.460961	1848.90737	1.7194	0.0015912	1.4187	0.001313	3.1381	0.0029042	925.964176260094	15.083	0.21284	15.083	14.994	15.207	0	234	52	1.16792504164217	0.0338872942601851	1.16792504164217	471.278042297527	0	13.6741118892742						557	25	5	NaN	NaN	NaN	8.2068E-05	1	28467	103.23	80.082	1	178740			912	3452	781	788	912	912		
ALCQITDSTMLQAIER	16	Oxidation (M)	_ALCQITDSTM(Oxidation (M))LQAIER_	ALCQITDSTM(1)LQAIER	ALCQITDSTM(43)LQAIER	0	1	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.458418	1864.90228	1.1817	0.0011031	0.92671	0.00086505	2.1084	0.0019681	933.458909557043	11.642	0.097626	11.642	11.571	11.669	0	231	37	1.16991841121525	0.0239187954987381	1.16991841121525	472.052251548576	0	9.65103306458843						184	12	2	NaN	NaN	NaN	0.0094202	1	28803	42.941	40.047	1	41092			913	3452	781	789	913	913	651	
ALCYLVLK	8	Unmodified	_ALCYLVLK_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.285889	978.557224	-0.31934	-0.00015657	-1.8708	-0.00091722	-2.1901	-0.0010738	490.284882787439	11.58	0.15967	11.58	11.527	11.687	0	687	55	0.863749705078866	0.036644552172756	0.863749705078866	350.836599959952	0	14.8842309476342						373	19	3	NaN	NaN	NaN	0.070101	1	3816	44.42	27.025	1	99722			914	1867	782	790	914	914		
ALDDISESIK	10	Unmodified	_ALDDISESIK_			0	0	0	Q9Y3B8	Q9Y3B8	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.784961	1089.55537	0.59892	0.00032688	-0.060906	-3.3241E-05	0.53801	0.00029364	545.785147128755	8.5825	0.21293	8.5825	8.4938	8.7068	0	645	49	0.892219381832517	0.0324961712839548	0.892219381832517	361.888229462372	0	13.1805945148856						426	25	3	NaN	NaN	NaN	0.04101	1	6451	28.647	20.464	1	130560			915	3381	783	791	915	915		
ALDDMISTLK	10	Unmodified	_ALDDMISTLK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.791732	1105.56891	0.99333	0.0005501	0.09377	5.1929E-05	1.0871	0.00060203	553.792197347697	12.724	0.29267	12.724	12.609	12.901	0	648	100	0.890187667287968	0.0669816057087984	0.890187667287968	360.998840972109	0	27.1631285355753						1566	34	5	NaN	NaN	NaN	0.00528	1	6868	67.881	41.424	1	1275900			916	1129	784	792	916	916		
ALDEGDIALLK	11	Unmodified	_ALDEGDIALLK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.324254	1156.63395	0.25554	0.00014804	-0.23489	-0.00013608	0.020648	1.1962E-05	579.324130332379	12.21	0.1774	12.21	12.157	12.334	0	591	76	0.928742107665821	0.0506663025429122	0.928742107665821	376.429073712823	0	20.5355923644033						468	21	4	NaN	NaN	NaN	0.00067762	1	8253	67.881	38.571	1	125500			917	981	785	793	917	917		
ALDELFEAIEQK	12	Unmodified	_ALDELFEAIEQK_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.364107	1404.71366	0.46638	0.00032803	-0.57147	-0.00040195	-0.1051	-7.3923E-05	703.363704185935	17.167	0.11527	17.167	17.114	17.229	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	405.078857590123	0	10.6032955952288						354	14	3	NaN	NaN	NaN	0.00018793	1	15610	77.358	58.035	1	145180			918	1920	786	794	918	918		
ALDELMDGDIIVFQK	15	Unmodified	_ALDELMDGDIIVFQK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.937113	1705.85967	1.1877	0.0010142	1.3474	0.0011506	2.5351	0.0021648	853.938275911051	17.521	0.079826	17.521	17.477	17.557	0	240	31	1.16393748060522	0.0199432886001865	1.16393748060522	469.962152439775	0	8.05248648956444						236	10	4	NaN	NaN	NaN	0.0002547	1	24658	51.454	47.471	1	57272			919	2452	787	795	919	919		
ALDGPEQMELEEGK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ALDGPEQMELEEGK_			1	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.363978	1586.7134	1.956	0.0015538	1.3504	0.0010727	3.3065	0.0026266	794.36500825636	12.724	0.17736	12.724	12.644	12.822	0	378	31	1.07192009927972	0.0200699816330834	1.07192009927972	433.070187908463	0	8.1085434660655						496	21	4	NaN	NaN	NaN	0.035502	1	21161	40.224	34.728	1	125580			920	1369	788	796	920	920		
ALDIAENEMPGLMR	14	Unmodified	_ALDIAENEMPGLMR_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.381451	1558.74835	2.3061	0.0017996	-1.4022	-0.0010942	0.90391	0.00070539	780.38104310986	13.895	0.2926	13.895	13.744	14.036	0	396	61	1.05987478976334	0.0401732058727873	1.05987478976334	428.270195245467	0	16.2330370426271						1151	34	6	NaN	NaN	NaN	4.7499E-17	1	20316	192.14	173.63	1	709940			921	822	789	797	921	921		
ALDIAENEMPGLMR	14	Oxidation (M)	_ALDIAENEMPGLM(Oxidation (M))R_	ALDIAENEM(0.004)PGLM(0.996)R	ALDIAENEM(-24)PGLM(24)R	0	1	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.378908	1574.74326	1.08	0.00085141	2.5778	0.0020323	3.6578	0.0028837	788.381169963356	11.997	0.18623	11.997	11.899	12.086	0	399	70	1.0578662689527	0.0461705299793509	1.0578662689527	427.420354926109	0	18.6547438840619						664	22	5	NaN	NaN	NaN	0.00082924	1	20815	78.043	66.024	2	211690			922	822	789	798	922	922	277	
ALDLDSSCK	9	Unmodified	_ALDLDSSCK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.736957	1007.45936	0.82276	0.00041528	1.9328	0.00097558	2.7556	0.0013909	504.738150513888	4.7958	0.36356	4.7958	4.6361	4.9997	0	714	46	0.845418525735192	0.030573200685858	0.845418525735192	343.254287251483	0	12.4132389946088						729	42	5	NaN	NaN	NaN	0.0011101	1	4449	74.486	46.75	1	598500			923	934	790	799	923	923		
ALDLFSDNAPPPELLEIINEDIAK	24	Unmodified	_ALDLFSDNAPPPELLEIINEDIAK_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.793448	2636.35851	1.0421	0.00091681	-0.82586	-0.00072659	0.21621	0.00019022	880.127281778471	20.119	0.053194	20.119	20.111	20.164	0	486	40	0.999498404980629	0.026215536116896	0.999498404980629	603.623745137543	0	15.8322614751706						208	7	5	NaN	NaN	NaN	1.6284E-13	1	37385	126.42	120.32	1	93590			924	1811	791	800	924	924		
ALDLFSDNAPPPELLEIINEDIAK	24	Unmodified	_ALDLFSDNAPPPELLEIINEDIAK_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.793448	2636.35851	1.7617	0.0015499	-1.3514	-0.001189	0.41025	0.00036094	880.4601874148	20.119	0.03547	20.119	20.119	20.155	0	330	34	1.10399226369747	0.0220329079288653	1.10399226369747	666.730375290585	0	13.3062607911361						80	5	4	NaN	NaN	NaN	0.039999	1	37386	12.465	12.231	1	20204			925	1811	791	800	925	925		
ALDLLYGMVSK	11	Unmodified	_ALDLLYGMVSK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.331024	1208.6475	0.79284	0.00047993	-0.6068	-0.00036731	0.18604	0.00011262	605.330393931572	15.473	0.17754	15.473	15.375	15.553	0	525	94	0.973257487423603	0.0627219108989425	0.973257487423603	394.271541810813	0	25.4089640562746						626	21	3	NaN	NaN	NaN	0.0077712	1	9700	36.514	25.154	1	138810			926	108	792	801	926	926		
ALDMSYDHKPEDEVELAR	18	Unmodified	_ALDMSYDHKPEDEVELAR_			0	0	1	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.665121	2116.97353	1.6077	0.0011361	0.4654	0.00032888	2.0731	0.001465	706.999713535165	8.5559	0.12413	8.5559	8.5205	8.6446	0	513	49	0.981336640919867	0.032312153640667	0.981336640919867	593.417316758536	0	19.5392597326852						552	15	5	NaN	NaN	NaN	9.5788E-05	1	33575	73.305	66.783	1	192420			927	166	793	802	927	927		
ALDPADQHLR	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ALDPADQHLR_			1	0	0	Q7Z7K0	Q7Z7K0	Q7Z7K0	CMC1	COX assembly mitochondrial protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.301644	1176.58874	1.2948	0.000763	0.90742	0.00053474	2.2022	0.0012977	589.302178461146	7.5358	0.22166	7.5358	7.4294	7.6511	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	380.458422885902	0	9.84896663603195						467	26	4	NaN	NaN	NaN	0.0023132	1	8786	74.269	57.811	1	166840			928	2154	794	803	928	928		
ALDTMNFDVIK	11	Unmodified	_ALDTMNFDVIK_			0	0	0	P11940;Q13310	P11940;Q13310	P11940	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.823563	1265.63257	1.812	0.0011485	1.074	0.00068072	2.886	0.0018292	633.824398908567	13.584	0.2394	13.584	13.487	13.726	0	543	85	0.961130371139249	0.0565776016813433	0.961130371139249	389.160807388507	0	22.9082191256933						1514	28	6	NaN	NaN	NaN	0.00089377	1	11381	78.932	64.169	1	1304500			929	661;1653	795	804	929	929		
ALDVGSGSGILTACFAR	17	Unmodified	_ALDVGSGSGILTACFAR_			0	0	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.930154	1693.84575	1.6043	0.0013603	0.90665	0.00076878	2.5109	0.0021291	847.931222845688	14.435	0.079792	14.435	14.4	14.48	-1.7764E-15	186	73	1.1997861197946	0.047785072081151	1.1997861197946	484.464422624988	0	19.2952451890771						338	10	3	NaN	NaN	NaN	4.3179E-10	1	24316	115.35	107.38	1	83300			930	799	796	805	930	930		
ALDVMVSTFHK	11	Unmodified	_ALDVMVSTFHK_			0	0	0	P26447	P26447	P26447	S100A4	Protein S100-A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.326273	1246.63799	1.3183	0.00082305	1.7812	0.0011121	3.0995	0.0019351	624.32785598549	9.443	0.33692	9.443	9.3544	9.6913	0	513	49	0.981336640919867	0.032312153640667	0.981336640919867	397.407641764504	0	13.0853126676622						924	39	5	NaN	NaN	NaN	0.00025544	1	10826	83.438	64.182	1	990730			931	854	797	806	931	931		
ALDVMVSTFHK	11	Oxidation (M)	_ALDVM(Oxidation (M))VSTFHK_	ALDVM(1)VSTFHK	ALDVM(110)VSTFHK	0	1	0	P26447	P26447	P26447	S100A4	Protein S100-A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.323731	1262.63291	1.4771	0.00093398	2.1047	0.0013308	3.5817	0.0022648	632.326078264884	7.5181	0.20394	7.5181	7.4383	7.6422	0	531	85	0.969216233931596	0.0566324341857632	0.969216233931596	392.444824029778	0	22.9310084688267						778	24	4	NaN	NaN	NaN	0.00013428	1	11299	107.08	89.608	1	246380			932	854	797	807	932	932	287	
ALDVSASDDEIAR	13	Unmodified	_ALDVSASDDEIAR_			0	0	0	P13798	P13798	P13798	APEH	Acylamino-acid-releasing enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.330795	1360.64704	1.4115	0.0009617	0.72925	0.00049686	2.1408	0.0014586	681.331382851357	7.5801	0.2128	7.5801	7.4738	7.6865	0	474	79	1.00756305028564	0.0524564762308631	1.00756305028564	407.653728105756	0	21.2235632229071						596	25	4	NaN	NaN	NaN	0.00021969	1	14223	71.066	49.978	1	191880			933	684	798	808	933	933		
ALDYCHSMGIMHR	13	Unmodified	_ALDYCHSMGIMHR_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.903984	1589.69012	-1.2193	-0.00064735	0.83002	0.00044066	-0.38931	-0.00020669	530.904667822096	7.0481	0.097572	7.0481	7.0126	7.1102	0	762	25	0.812773098473386	0.0163431521630455	0.812773098473386	492.546280741624	0	9.90406649607644						165	12	4	NaN	NaN	NaN	0.00022813	1	21262	53.028	50.357	1	40512			934	1450	799	809	934	934		
ALEATTEHIR	10	Unmodified	_ALEATTEHIR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.80402	1139.59349	2.0354	0.0011618	-3.4469	-0.0019675	-1.4114	-0.00080563	570.801528836979	3.6696	0.27485	3.6696	3.5633	3.8381	0	606	25	0.918606045818476	0.0162233196109728	0.918606045818476	372.38642639528	0	6.57664299260716						217	32	3	NaN	NaN	NaN	0.00051154	1	7779	103.8	67.234	1	44299			935	3406	800	810	935	935		
ALEATTEHIR	10	Unmodified	_ALEATTEHIR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	380.871772	1139.59349	-0.52879	-0.0002014	1.2328	0.00046954	0.70402	0.00026814	381.206509195704	3.6785	0.19506	3.6785	3.6076	3.8026	0	861	19	0.745211914437924	0.0123121104560218	0.745211914437924	453.138520796271	0	7.48658389893029						132	23	2	NaN	NaN	NaN	0.015968	1	7780	42.075	37.872	1	30581			936	3406	800	810	936	936		
ALEDAFLAIDAK	12	Unmodified	_ALEDAFLAIDAK_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.84281	1275.67107	0.78517	0.0005016	1.7396	0.0011113	2.5247	0.0016129	638.843296623666	14.684	0.15963	14.684	14.639	14.799	0	504	70	0.987393073566096	0.0464070054618659	0.987393073566096	399.760590554812	0	18.7885578762611						559	19	4	NaN	NaN	NaN	0.03787	1	11654	50.09	31.753	1	219210			937	166	801	811	937	937		
ALEDLVDFK	9	Unmodified	_ALEDLVDFK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.279315	1048.54408	-0.54288	-0.00028517	2.1404	0.0011243	1.5975	0.00083915	525.28037588377	13.691	0.097516	13.691	13.646	13.744	0	681	31	0.867820189810857	0.0203524260142245	0.867820189810857	352.163662078837	0	8.25906675312552						195	12	3	NaN	NaN	NaN	0.01291	1	5436	39.01	16.624	1	41812			938	1074	802	812	938	938		
ALEDMFDALEGK	12	Unmodified	_ALEDMFDALEGK_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.815935	1337.61732	-0.0028172	-1.887E-06	-0.12171	-8.1523E-05	-0.12453	-8.341E-05	669.815857708401	17.344	0.11527	17.344	17.291	17.406	0	519	40	0.97729762293174	0.0262590697317363	0.97729762293174	395.476985919367	0	10.626095374509						289	14	3	NaN	NaN	NaN	0.0057741	1	13517	51.531	45.665	1	88829			939	826	803	813	939	939		
ALEEANTELEVK	12	Unmodified	_ALEEANTELEVK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.345914	1344.67728	2.615	0.0017608	0.64118	0.00043174	3.2562	0.0021925	673.346579336789	7.3231	0.56758	7.3231	7.0569	7.6245	0	462	172	1.01562323939346	0.115088580774955	1.01562323939346	410.963906374906	0	46.5696834218421						2592	65	5	NaN	NaN	NaN	4.9022E-11	1	13739	180.81	103.45	1	3103800		+	940	36	804	814	940	940		
ALEFGEPVLLVGDTGCGK	18	Unmodified	_ALEFGEPVLLVGDTGCGK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.471851	1860.92915	0.86215	0.00080307	0.81144	0.00075583	1.6736	0.0015589	931.973994868948	16.28	0.14188	16.28	16.209	16.351	0	243	43	1.16194328902838	0.0279244452018852	1.16194328902838	468.841747940826	0	11.2674567015034						344	17	3	NaN	NaN	NaN	0.0035022	1	28718	42.495	34.919	1	93682			941	3048	805	815	941	941		
ALEFIPSDQQNEMVR	15	Unmodified	_ALEFIPSDQQNEMVR_			0	0	0	Q14671	Q14671	Q14671	PUM1	Pumilio homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.932893	1775.85123	1.9621	0.0017442	-0.4988	-0.0004434	1.4633	0.0013008	889.434025639634	12.201	0.15963	12.201	12.094	12.254	0	288	46	1.13199748998575	0.0299870223573788	1.13199748998575	456.920559381817	0	12.1039906456868						311	19	3	NaN	NaN	NaN	0.0032397	1	26564	31.04	23.901	1	70735			942	1762	806	816	942	942		
ALEGTLSELAAETDLPVVFVK	21	Unmodified	_ALEGTLSELAAETDLPVVFVK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1101.59883	2201.18312	0.26157	0.00028815	-0.032089	-3.5349E-05	0.22948	0.0002528	1102.10070431091	19.96	0.026617	19.96	19.951	19.978	0	96	34	1.2593374219024	0.0217921059234705	1.2593374219024	507.558469648351	0	8.78300584145472						103	4	4	NaN	NaN	NaN	1.6456E-11	1	34692	132.93	126.73	1	52443			943	1914	807	817	943	943		
ALEHAFQLEHIMDLTR	16	Unmodified	_ALEHAFQLEHIMDLTR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	481.749093	1922.96727	-0.94696	-0.00045619	0.1614	7.7756E-05	-0.78555	-0.00037844	481.749227514534	14.161	0.088675	14.161	14.134	14.223	0	714	19	0.845418525735192	0.0122284278950673	0.845418525735192	682.081306849803	0	9.86586149402478						144	11	4	NaN	NaN	NaN	0.002719	1	30122	45.183	44.302	1	30439			944	1737	808	818	944	944		
ALEHAFQLEHIMDLTR	16	Unmodified	_ALEHAFQLEHIMDLTR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.996365	1922.96727	0.63574	0.00040814	-0.73908	-0.00047448	-0.10334	-6.6342E-05	642.330361607549	14.161	0.15074	14.161	14.116	14.267	0	612	34	0.914549654013882	0.0223147973671984	0.914549654013882	553.394158259577	0	13.5026878546787						485	18	5	NaN	NaN	NaN	5.5372E-09	1	30124	85.742	83.027	1	224870			945	1737	808	818	945	945		
ALEHFTDLYDIK	12	Unmodified	_ALEHFTDLYDIK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.917158	1463.72965	-1.1669	-0.0005705	-0.54654	-0.00026721	-1.7134	-0.00083771	488.916879803681	11.873	0.15076	11.873	11.828	11.979	0	741	97	0.827064408645228	0.0653817795332174	0.827064408645228	501.578766019466	0	39.6512193677229						983	18	5	NaN	NaN	NaN	0.00024428	1	17389	85.821	76.559	1	536750			946	1503	809	819	946	946		
ALEHFTDLYDIK	12	Unmodified	_ALEHFTDLYDIK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.872099	1463.72965	1.1653	0.000854	2.7137	0.0019888	3.8789	0.0028428	732.8740845084	11.873	0.23944	11.873	11.828	12.068	0	396	85	1.05987478976334	0.0562890913532808	1.05987478976334	428.514869929727	0	22.7580775509336						1061	28	5	NaN	NaN	NaN	3.0243E-11	1	17393	183.57	140.4	1	697290			947	1503	809	819	947	947		
ALELCEILAK	10	Unmodified	_ALELCEILAK_			0	0	0	P49354	P49354	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.323199	1158.63185	0.45026	0.0002613	-3.2675	-0.0018962	-2.8172	-0.0016349	580.321760939649	14.453	0.15074	14.453	14.365	14.515	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	373.135130094122	0	9.86166052084502						372	18	4	NaN	NaN	NaN	0.0080387	1	8329	47.561	16.968	1	96422			948	1128	810	820	948	948		
ALELDSNLYR	10	Unmodified	_ALELDSNLYR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.311677	1192.6088	1.1713	0.00069962	0.83558	0.0004991	2.0069	0.0011987	597.312312359267	10.356	0.20392	10.356	10.277	10.48	0	561	61	0.948993180460448	0.040479730715125	0.948993180460448	384.500301580555	0	16.4010332090198						614	24	4	NaN	NaN	NaN	0.0081578	1	9234	54.436	26.7	1	243430			949	972	811	821	949	949		
ALELDSNNEK	10	Unmodified	_ALELDSNNEK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.777667	1131.54078	2.3682	0.0013422	5.1316	0.0029085	7.4997	0.0042507	566.778268060263	4.3701	0.40788	4.3701	4.2815	4.6893	0	612	79	0.914549654013882	0.0527843383249464	0.914549654013882	370.773538249692	0	21.3996427629857						605	47	2	NaN	NaN	NaN	0.00049123	1	7572	111.39	64.556	1	485170			950	1530	812	822	950	950		
ALELEQER	8	Unmodified	_ALELEQER_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.258914	986.503274	0.94375	0.00046646	2.3877	0.0011801	3.3314	0.0016466	494.260278754149	5.2125	0.42566	5.2125	5.044	5.4697	0	681	85	0.867820189810857	0.0569947532381933	0.867820189810857	352.450571305409	0	23.1474602412629						833	49	2	NaN	NaN	NaN	0.0031132	1	3981	82.716	46.147	1	455650			951	846	813	823	951	951		
ALELEQERK	9	Unmodified	_ALELEQERK_			0	0	1	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.306395	1114.59824	1.4829	0.00082792	-0.31318	-0.00017485	1.1697	0.00065307	558.30639501097	3.4035	0.23066	3.4035	3.3681	3.5987	0	630	37	0.902373728295776	0.0243619867259138	0.902373728295776	365.904169979002	0	9.87855946207594						288	27	3	NaN	NaN	NaN	0.0057177	1	7121	72.038	20.174	1	86476			952	846	814	824	952	952		
ALELLYLPENK	11	Unmodified	_ALELLYLPENK_			0	0	0	O43709	O43709	O43709	WBSCR22	Probable 18S rRNA (guanine-N(7))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.868828	1301.7231	0.78657	0.00051274	-0.9952	-0.00064874	-0.20863	-0.000136	651.867997490049	14.675	0.12413	14.675	14.622	14.746	0	486	67	0.999498404980629	0.0443985138367106	0.999498404980629	404.574870935945	0	17.9715374389047						414	15	2	NaN	NaN	NaN	0.004415	1	12409	51.872	43.399	1	116040			953	222	815	825	953	953		
ALELNMLSLK	10	Unmodified	_ALELNMLSLK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.325742	1130.63693	0.79201	0.00044853	-0.54856	-0.00031066	0.24345	0.00013787	566.325664047011	14.914	0.24828	14.914	14.817	15.065	0	585	55	0.932794566565362	0.0364822520341863	0.932794566565362	378.173992067394	0	14.7906510028007						572	29	3	NaN	NaN	NaN	0.0015599	1	7559	76.572	45.979	1	486420			954	3450	816	826	954	954		
ALELTGLK	8	Unmodified	_ALELTGLK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.760561	843.506569	-1.9351	-0.00081809	-1.0272	-0.00043428	-2.9624	-0.0012524	422.760260724872	8.9996	0.20396	8.9996	8.9553	9.1592	0	789	31	0.794378096728713	0.0204488487727063	0.794378096728713	323.374260133683	0	8.32428709916678						234	24	3	NaN	NaN	NaN	0.047806	1	1472	33.396	5.691	1	81235			955	764	817	827	955	955		
ALENDPDCR	9	Unmodified	_ALENDPDCR_			0	0	0	P13797;P13796	P13797	P13797	PLS3;LCP1	Plastin-3;Plastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.235113	1088.45567	1.2041	0.00065654	-0.27119	-0.00014786	0.93296	0.00050868	545.235007432792	2.5079	0.34587	2.5079	2.4724	2.8183	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	347.041788601106	0	8.26087460576196						600	40	4	NaN	NaN	NaN	0.0029762	1	6428	65.156	60.249	1	131690			956	683	818	828	956	956		
ALEPTGQSGEAVK	13	Unmodified	_ALEPTGQSGEAVK_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.832974	1285.6514	2.9029	0.001869	-2.5623	-0.0016497	0.34064	0.00021932	643.831345443212	3.9179	0.18621	3.9179	3.8647	4.0509	0	567	37	0.944945209309785	0.0242844683109597	0.944945209309785	382.543156345325	0	9.8311066782677						230	22	2	NaN	NaN	NaN	0.002595	1	11928	44.598	26.261	1	59371			957	2394	819	829	957	957		
ALEPTGQSGEAVK	13	Unmodified	_ALEPTGQSGEAVK_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.832974	1285.6514	3.0149	0.0019411	-2.3897	-0.0015386	0.62514	0.00040249	643.8316726121	3.9179	0.088664	3.9179	3.8736	3.9622	0	525	28	0.973257487423603	0.0181843844613631	0.973257487423603	394.004844750464	0	7.36160334666266						140	11	3	NaN	NaN	NaN	0.061583	1	11929	33.1	23.586	1	28176			958	2394	819	829	958	958		
ALEQFATVVEAK	12	Unmodified	_ALEQFATVVEAK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.356085	1304.69762	1.51	0.00098656	0.2931	0.0001915	1.8031	0.0011781	653.356029470724	11.429	0.13305	11.429	11.376	11.509	0	444	64	1.02770517576159	0.0423072461230747	1.02770517576159	415.982383359309	0	17.1246282403935						528	16	3	NaN	NaN	NaN	0.00068457	1	12506	79.311	49.556	1	147280			959	1145	820	830	959	959		
ALEQLNGFELAGRPMK	16	Unmodified	_ALEQLNGFELAGRPMK_			0	0	1	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.982056	1772.92434	-0.19934	-0.00011801	-1.0644	-0.00063009	-1.2637	-0.0007481	592.315202717305	11.811	0.070943	11.811	11.784	11.855	0	636	46	0.898312834727904	0.0304545980014471	0.898312834727904	543.898351573237	0	18.4392396617933						174	9	3	NaN	NaN	NaN	0.00022763	1	26490	58.313	51.457	1	34805			960	1753	821	831	960	960		
ALEQQVEEMK	10	Unmodified	_ALEQQVEEMK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.797546	1203.58054	1.2923	0.000779	1.1691	0.00070472	2.4614	0.0014837	602.798349589308	6.7466	0.26599	6.7466	6.6402	6.9062	0	561	55	0.948993180460448	0.0364468926238521	0.948993180460448	384.460210569114	0	14.7655223464907						368	31	2	NaN	NaN	NaN	4.9027E-06	1	9567	126.29	96.983	1	153970			961	972	822	832	961	961		
ALESDMAPVLIMATNR	16	Unmodified	_ALESDMAPVLIMATNR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.44204	1730.86953	0.87293	0.00075634	0.79312	0.00068719	1.666	0.0014435	866.442692832972	15.934	0.07095	15.934	15.899	15.97	0	159	82	1.21767724410157	0.0537028874055938	1.21767724410157	491.603358801013	0	21.6810488606784						240	9	3	NaN	NaN	NaN	0.016325	1	25355	35.45	32.971	1	37108			962	3325	823	833	962	962		
ALESDMAPVLIMATNR	16	Unmodified	_ALESDMAPVLIMATNR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.44204	1730.86953	1.7535	0.0015193	1.1119	0.00096343	2.8654	0.0024827	866.442002697897	15.925	0.45225	15.925	15.659	16.111	1.7764E-15	279	115	1.13799159301878	0.0759933747779129	1.13799159301878	459.432489772251	0	30.6802138035092						1349	52	5	NaN	NaN	NaN	0.00023756	1	25356	88.42	85.526	1	401110			963	3325	823	833	963	963		
ALESPERPFLAILGGAK	17	Unmodified	_ALESPERPFLAILGGAK_			0	0	1	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.336716	1767.98832	-0.55077	-0.00032514	-1.0892	-0.00064302	-1.64	-0.00096816	590.336131550233	15.375	0.32821	15.375	15.251	15.579	0	738	46	0.829104889055312	0.0306072144336844	0.829104889055312	502.006120472764	0	18.532044834326						1281	38	6	NaN	NaN	NaN	8.4529E-05	1	26364	108.5	85.54	1	1022500			964	484	824	834	964	964		
ALESSIAPIVIFASNR	16	Unmodified	_ALESSIAPIVIFASNR_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.317433	1686.93047	-0.59507	-0.00033522	0.17473	9.8428E-05	-0.42035	-0.00023679	563.31726084124	17.353	0.15959	17.353	17.282	17.442	0	633	28	0.900343422309015	0.0182727556379993	0.900343422309015	545.343134103153	0	11.0679120671217						317	19	4	NaN	NaN	NaN	0.0044556	1	24117	48.822	45.318	1	88428			965	3331	825	835	965	965		
ALESSIAPIVIFASNR	16	Unmodified	_ALESSIAPIVIFASNR_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.472512	1686.93047	0.9238	0.00078012	1.4847	0.0012538	2.4085	0.0020339	844.473773394521	17.353	0.15959	17.353	17.291	17.45	0	165	79	1.21370334790578	0.0517103393281333	1.21370334790578	490.100393926343	0	20.8809324935226						781	19	5	NaN	NaN	NaN	5.2395E-05	1	24119	115.05	103.03	1	301490			966	3331	825	835	966	966		
ALESSLWELQALQR	14	Unmodified	_ALESSLWELQALQR_			0	0	0	Q9BVI4	Q9BVI4	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.6299	1642.86787	-2.0803	-0.0011413	0.39625	0.0002174	-1.6841	-0.00092393	548.629634948613	15.934	0.044354	15.934	15.916	15.961	0	720	13	0.841341816837976	0.00815455099452034	0.841341816837976	509.716743582142	0	4.94033589572763						47	6	2	NaN	NaN	NaN	0.013806	1	22838	53.517	48.688	1	10032			967	2764	826	836	967	967		
ALEVAEYLTPVLK	13	Unmodified	_ALEVAEYLTPVLK_			0	0	0	Q9NT62	Q9NT62	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.416143	1444.81773	0.013275	9.6032E-06	-0.54463	-0.00039399	-0.53135	-0.00038439	723.415547838397	16.759	0.13299	16.759	16.706	16.839	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	410.673993626012	0	8.95968126180509						317	16	4	NaN	NaN	NaN	0.00049681	1	16834	65.879	59.132	1	118340			968	3040	827	837	968	968		
ALEVFPEFAAAHSNLASVLQQQGK	24	Unmodified	_ALEVFPEFAAAHSNLASVLQQQGK_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	852.446605	2554.31799	0.58898	0.00050208	3.6006	0.0030694	4.1896	0.0035714	852.783362757371	17.078	0.088666	17.078	17.034	17.122	0	270	28	1.14398322290989	0.0179699474696835	1.14398322290989	690.998337879682	0	10.8543583373116						153	11	3	NaN	NaN	NaN	2.459E-06	1	37045	37.769	36.343	1	27934			969	161	828	838	969	969		
ALEVLEEVK	9	Unmodified	_ALEVLEEVK_			0	0	0	Q92526	Q92526	Q92526	CCT6B	T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.294965	1028.57538	0.094221	4.8552E-05	3.2172	0.0016578	3.3114	0.0017063	515.296756110649	12.999	0.19508	12.999	12.928	13.123	0	669	52	0.875957769340875	0.0345823239613182	0.875957769340875	355.5553396992	0	14.037126416387						486	23	3	NaN	NaN	NaN	0.060972	1	4963	17.395	5.3287	1	190260			970	2407	829	839	970	970		
ALEVYDLIR	9	Unmodified	_ALEVYDLIR_			0	0	0	Q9H5X1	Q9H5X1	Q9H5X1	FAM96A	MIP18 family protein FAM96A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.308406	1090.60226	0.22158	0.00012105	0.23212	0.00012681	0.4537	0.00024786	546.311046088557	14.4	0.21281	14.4	14.276	14.489	0	651	73	0.888155670855968	0.0487510374716118	0.888155670855968	360.2356502872	0	19.7734048906498						732	25	4	NaN	NaN	NaN	0.011712	1	6482	40.502	19.227	1	187440			971	2902	830	840	971	971		
ALEYTIYNQELNETR	15	Unmodified	_ALEYTIYNQELNETR_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.95488	1855.89521	2.3426	0.0021762	-1.5251	-0.0014168	0.81747	0.00075939	928.953551527707	11.358	0.11532	11.358	11.314	11.429	0	291	58	1.12999890578964	0.0379678915865906	1.12999890578964	455.961413011528	0	15.3202745668084						540	14	4	NaN	NaN	NaN	4.4182E-06	1	28604	75.5	70.113	1	146350			972	3321	831	841	972	972		
ALFAGDIEEMEER	13	Unmodified	_ALFAGDIEEMEER_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.348131	1508.68171	1.3349	0.0010083	2.7182	0.0020532	4.0531	0.0030615	755.350217787126	13.185	0.12416	13.185	13.132	13.256	0	396	61	1.05987478976334	0.0401565865684175	1.05987478976334	428.395291297226	0	16.2310612221663						450	15	4	NaN	NaN	NaN	0.00044359	1	18750	54.27	46.269	1	131360			973	2691	832	842	973	973		
ALFAISCLVR	10	Unmodified	_ALFAISCLVR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.326076	1148.6376	-0.094029	-5.4097E-05	-4.6302	-0.0026639	-4.7242	-0.0027179	575.824661175549	15.739	0.21282	15.739	15.668	15.881	0	633	58	0.900343422309015	0.038565133185127	0.900343422309015	364.948734929531	0	15.6321423798556						650	25	4	NaN	NaN	NaN	0.025729	1	8036	36.211	29.06	1	169420			974	3134	833	843	974	974		
ALFEEVPELLTEAEK	15	Unmodified	_ALFEEVPELLTEAEK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.448368	1716.88218	2.1554	0.0018525	1.149	0.0009875	3.3044	0.00284	859.449412177053	18.47	0.37246	18.47	18.311	18.683	0	315	82	1.11400032671325	0.0540063961709245	1.11400032671325	449.775792293658	0	21.8049932699485						857	43	5	NaN	NaN	NaN	0.0031842	1	24970	64.266	47.978	1	512810			975	929	834	844	975	975		
ALFPGDSEIDQLFR	14	Unmodified	_ALFPGDSEIDQLFR_			0	0	0	P24941;Q00526	P24941	P24941	CDK2;CDK3	Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.406837	1606.79912	1.4916	0.0011999	-0.25397	-0.0002043	1.2377	0.00099558	804.406611449323	18.417	0.11533	18.417	18.373	18.488	0	411	70	1.04982941439551	0.0462215064140965	1.04982941439551	424.099379825957	0	18.6720927572095						470	14	4	NaN	NaN	NaN	0.00069762	1	21819	51.454	41.203	1	162270			976	834	835	845	976	976		
ALGALVDSCAPGLCPDWDSWDASK	24	Unmodified	_ALGALVDSCAPGLCPDWDSWDASK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	864.389551	2590.14682	0.1402	0.00012119	-0.44684	-0.00038624	-0.30663	-0.00026505	864.723529748513	17.246	0.062095	17.246	17.22	17.282	0	519	34	0.97729762293174	0.0222192115744939	0.97729762293174	590.271327728034	0	13.4200301007614						207	8	4	NaN	NaN	NaN	0.020811	1	37204	24.832	24.618	1	33939			977	792	836	846	977	977		
ALGALVDSCAPGLCPDWDSWDASK	24	Unmodified	_ALGALVDSCAPGLCPDWDSWDASK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1296.08069	2590.14682	-0.11272	-0.0001461	-0.028574	-3.7034E-05	-0.1413	-0.00018313	1296.58274278587	17.246	0.053206	17.246	17.22	17.273	0	63	40	1.28111162701928	0.0257190637601958	1.28111162701928	515.847654351685	0	10.3559427867239						147	7	4	NaN	NaN	NaN	0.015712	1	37205	27.236	24.922	1	19412			978	792	836	846	978	978		
ALGEPITLFGEGPAER	16	Unmodified	_ALGEPITLFGEGPAER_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.933219	1655.85189	1.3771	0.0011415	0.3194	0.00026476	1.6965	0.0014063	828.93401217161	14.87	0.15072	14.87	14.808	14.959	-1.7764E-15	372	46	1.07593298845566	0.0300987514489623	1.07593298845566	434.534371685935	0	12.1559076538575						541	18	4	NaN	NaN	NaN	5.246E-09	1	23225	123.99	110.19	1	172840			979	188	837	847	979	979		
ALGLAHVAIK	10	Unmodified	_ALGLAHVAIK_			0	0	0	Q6P3X3	Q6P3X3	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.816202	991.617851	0.66722	0.00033149	0.083659	4.1563E-05	0.75088	0.00037305	496.816312543391	7.3585	0.07092	7.3585	7.3319	7.4028	0	654	25	0.886123392477847	0.0162593562180621	0.886123392477847	359.858594925748	0	6.60299584989826						128	9	3	NaN	NaN	NaN	0.00082978	1	4101	67.903	53.367	1	37784			980	2066	838	848	980	980		
ALGLGVEQLPVVFEDVVLHQATILPK	26	Unmodified	_ALGLGVEQLPVVFEDVVLHQATILPK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	929.200261	2784.57895	1.0913	0.001014	-0.9831	-0.0009135	0.10816	0.00010051	929.533670751977	20.119	0.035461	20.119	20.102	20.137	0	474	139	1.00756305028564	0.0925006103024872	1.00756305028564	608.324280342201	0	55.8479860665024						526	5	5	NaN	NaN	NaN	1.1105E-06	1	37854	64.983	56.495	1	234520			981	1127	839	849	981	981		
ALGNICYDSHEGR	13	Unmodified	_ALGNICYDSHEGR_			0	0	0	P52306	P52306	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.893018	1490.65723	-1.4331	-0.00071352	2.2748	0.0011326	0.84176	0.00041911	497.894104584778	5.2835	0.097567	5.2835	5.2568	5.3544	0	771	31	0.806643990516186	0.0204374693945948	0.806643990516186	489.112007622133	0	12.392346318615						151	12	3	NaN	NaN	NaN	0.022989	1	18236	29.317	26.215	1	31156			982	1210	840	850	982	982		
ALGNNFYEYYVDDPPR	16	Unmodified	_ALGNNFYEYYVDDPPR_			0	0	0	P30047	P30047	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.941773	1931.86899	2.1732	0.0021013	3.3437	0.0032331	5.5168	0.0053344	967.446455532059	13.496	0.15962	13.496	13.451	13.611	0	162	28	1.21569043230068	0.0178739508793972	1.21569043230068	490.395299674265	0	7.21014270160606						312	19	4	NaN	NaN	NaN	1.8659E-06	1	30349	79.795	76.507	1	122390			983	897	841	851	983	983		
ALGNNFYEYYVDDPPR	16	Unmodified	_ALGNNFYEYYVDDPPR_			0	0	0	P30047	P30047	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.941773	1931.86899	2.2527	0.0021782	6.0204	0.0058213	8.273	0.0079995	967.449248322139	13.513	0.097531	13.513	13.487	13.584	0	189	22	1.1977968526266	0.0139286947503481	1.1977968526266	483.177229713073	0	5.61867242198383						114	12	4	NaN	NaN	NaN	0.00017433	1	30350	42.941	41.231	1	39873			984	897	841	851	984	984		
ALGQAASDNSGPEDAK	16	Unmodified	_ALGQAASDNSGPEDAK_			0	0	0	Q15155	Q15155	Q15155	NOMO1	Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.855166	1529.69578	2.611	0.0019996	-2.275	-0.0017423	0.33602	0.00025734	765.853506993626	3.2794	0.079817	3.2794	3.2528	3.3326	0	480	37	1.00353128488872	0.0241972834927519	1.00353128488872	405.570929665446	0	9.77918168502543						149	10	2	NaN	NaN	NaN	0.0097956	1	19412	39.166	34.638	1	28968			985	1818	842	852	985	985		
ALGQNPTNAEVLK	13	Unmodified	_ALGQNPTNAEVLK_			0	0	0	P60660;P14649	P60660	P60660	MYL6;MYL6B	Myosin light polypeptide 6;Myosin light chain 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.869891	1353.72523	2.4551	0.0016642	0.75768	0.00051361	3.2128	0.0021778	677.870779438814	6.7377	0.41682	6.7377	6.6757	7.0925	0	471	55	1.00957851518677	0.0362758759796945	1.00957851518677	408.490176485671	0	14.677747949476						797	48	5	NaN	NaN	NaN	0.00066441	1	14021	76.255	56.072	1	1308000			986	1309	843	853	986	986		
ALGSDHCPITLYLAL	15	Unmodified	_ALGSDHCPITLYLAL_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.426716	1642.83888	1.2195	0.001003	1.3288	0.0010929	2.5484	0.0020958	822.427325132448	18.16	0.16844	18.16	18.089	18.257	0	357	43	1.08596037261705	0.0280708775163501	1.08596037261705	438.612929517551	0	11.3376603161896						540	20	4	NaN	NaN	NaN	0.00018331	1	22837	74.424	53.274	1	205660			987	866	844	854	987	987		
ALGTEVIQLFPEK	13	Unmodified	_ALGTEVIQLFPEK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.905942	1443.79733	1.1765	0.00085047	0.67547	0.0004883	1.8519	0.0013388	722.906606491636	15.668	0.31922	15.668	15.535	15.854	0	438	76	1.03173026378327	0.0502893319238733	1.03173026378327	417.189767202991	0	20.3349610015142						1190	37	5	NaN	NaN	NaN	7.1461E-17	1	16797	187.85	155.8	1	491350			988	458	845	855	988	988		
ALGTLGMTTNEK	12	Unmodified	_ALGTLGMTTNEK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.318645	1234.62274	1.1864	0.00073356	-5.4404	-0.0033639	-4.254	-0.0026304	618.316086760256	7.1102	0.10641	7.1102	7.0836	7.19	0	549	25	0.957085760909907	0.016178442079587	0.957085760909907	387.628212837059	0	6.55241238134829						148	13	3	NaN	NaN	NaN	0.0028484	1	10458	78.932	53.678	1	57491			989	1991	846	856	989	989		
ALHDHLGLR	9	Unmodified	_ALHDHLGLR_			0	0	0	O14975	O14975	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	344.52968	1030.56721	-0.6573	-0.00022646	1.552	0.00053471	0.89471	0.00030825	344.530236000685	3.7317	0.079775	3.7317	3.7051	3.7849	0	882	25	0.730840773481911	0.0164298889557243	0.730840773481911	444.960438126029	0	10.0030688672052						81	10	2	NaN	NaN	NaN	0.049383	1	5022	27.736	17.657	1	19262			990	132	847	857	990	990		
ALHHGIDLEK	10	Unmodified	_ALHHGIDLEK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.809105	1131.60366	2.2757	0.0012899	-0.3823	-0.00021669	1.8934	0.0010732	566.808796006763	3.2084	0.097563	3.2084	3.1907	3.2883	0	588	25	0.93076847747433	0.0162075912580637	0.93076847747433	377.348689932812	0	6.57082129037343						131	12	3	NaN	NaN	NaN	0.0014471	1	7580	93.467	75.998	1	29964			991	705	848	858	991	991		
ALHHGIDLEK	10	Unmodified	_ALHHGIDLEK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.208495	1131.60366	-0.10258	-3.8796E-05	2.0285	0.00076718	1.9259	0.00072838	378.209384402764	3.2084	0.31045	3.2084	3.1641	3.4746	0	837	64	0.761618911097395	0.0430653846266905	0.761618911097395	463.154082640544	0	26.1888306864617						626	36	4	NaN	NaN	NaN	0.059182	1	7581	30.593	21.2	1	173960			992	705	848	858	992	992		
ALHQYTLEPSEK	12	Unmodified	_ALHQYTLEPSEK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.577025	1414.70924	-1.0504	-0.0004964	0.48532	0.00022935	-0.56509	-0.00026705	472.577143586824	4.8933	0.079885	4.8933	4.8667	4.9465	0	801	25	0.78619514174348	0.0163704683781356	0.78619514174348	476.947776254412	0	9.93119656257363						139	10	3	NaN	NaN	NaN	0.0047281	1	15923	43.168	35.611	1	30287			993	3173	849	859	993	993		
ALHQYTLEPSEK	12	Unmodified	_ALHQYTLEPSEK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.361899	1414.70924	2.2459	0.0015909	-2.4635	-0.0017451	-0.21764	-0.00015417	708.360122293529	4.8933	0.062081	4.8933	4.8667	4.9287	0	453	28	1.02166545906632	0.0181266605748145	1.02166545906632	413.200585391674	0	7.331114793246						116	8	3	NaN	NaN	NaN	0.025441	1	15924	48.701	45.093	1	20790			994	3173	849	859	994	994		
ALHSVLQAVPLNELR	15	Unmodified	_ALHSVLQAVPLNELR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.98954	1658.94679	-1.0115	-0.00056037	-0.14027	-7.7708E-05	-1.1518	-0.00063808	553.989280782259	13.221	0.09755	13.221	13.194	13.292	0	747	91	0.822982596624503	0.0611506995796797	0.822982596624503	498.553669812754	0	37.0444111602235						494	12	4	NaN	NaN	NaN	0.00068988	1	23314	79.889	65.434	1	126600			995	1881	850	860	995	995		
ALHSVLQAVPLNELR	15	Unmodified	_ALHSVLQAVPLNELR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.480671	1658.94679	2.2473	0.0018664	1.1662	0.00096854	3.4136	0.0028349	830.481755473257	13.221	0.088696	13.221	13.194	13.283	0	315	37	1.11400032671325	0.0240110882362814	1.11400032671325	449.901564403542	0	9.69714810803208						318	11	4	NaN	NaN	NaN	7.9265E-07	1	23315	87.573	66.422	1	94418			996	1881	850	860	996	996		
ALIAGGGAPEIELALR	16	Unmodified	_ALIAGGGAPEIELALR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.948672	1549.88279	1.2739	0.00098848	0.87291	0.00067733	2.1468	0.0016658	775.949461010515	15.367	0.13299	15.367	15.296	15.429	0	375	40	1.07392668217569	0.0260855828537037	1.07392668217569	433.97007665727	0	10.5410942651478						265	16	3	NaN	NaN	NaN	0.0047975	1	20055	46.358	44.374	1	58573			997	1175	851	861	997	997		
ALIAGGGAPEIELALR	16	Unmodified	_ALIAGGGAPEIELALR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.948672	1549.88279	2.1342	0.001656	2.1487	0.0016673	4.2829	0.0033233	775.950742715919	15.358	0.27502	15.358	15.313	15.588	0	276	85	1.13998907770044	0.0559642594324781	1.13998907770044	460.66565814354	0	22.6149643959598						1327	32	6	NaN	NaN	NaN	5.065E-12	1	20056	177.47	163.01	1	1257000			998	1175	851	861	998	998		
ALIEILATR	9	Unmodified	_ALIEILATR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.313492	998.612431	-0.4787	-0.0002395	-0.39051	-0.00019538	-0.86921	-0.00043488	500.313421920154	13.478	0.062063	13.478	13.442	13.504	0	693	43	0.85967808974117	0.0285013139595033	0.85967808974117	349.085584304397	0	11.573399340667						164	8	3	NaN	NaN	NaN	0.0001244	1	4265	105.81	49.794	1	42971			999	573	852	862	999	999		
ALIEVLQPLIAEHQAR	16	Unmodified	_ALIEVLQPLIAEHQAR_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.015866	1800.02577	-1.0524	-0.00063249	-4.1694	-0.0025059	-5.2217	-0.0031383	601.347727128667	15.615	0.18612	15.615	15.553	15.739	1.7764E-15	729	52	0.835224628594324	0.0346640784311575	0.835224628594324	505.641544656217	0	20.9854900848812						860	22	5	NaN	NaN	NaN	0.00014914	1	27218	68.108	55.425	1	388270			1000	818	853	863	1000	1000		
ALIEVLQPLIAEHQAR	16	Unmodified	_ALIEVLQPLIAEHQAR_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.015866	1800.02577	0.27276	0.00016393	-1.5078	-0.0009062	-1.235	-0.00074226	601.3489823253	15.606	0.15959	15.606	15.544	15.704	-1.7764E-15	582	106	0.934820374997243	0.0710017221302427	0.934820374997243	565.936387150612	0	42.9841488039664						1086	19	4	NaN	NaN	NaN	9.4865E-05	1	27219	73.891	63.641	1	343970			1001	818	853	863	1001	1001		
ALIEVLQPLIAEHQAR	16	Unmodified	_ALIEVLQPLIAEHQAR_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.02016	1800.02577	1.5973	0.0014392	0.0053655	4.8345E-06	1.6026	0.001444	901.521612631861	15.615	0.11526	15.615	15.562	15.677	0	255	76	1.15396378101328	0.0498479746966392	1.15396378101328	465.738584956848	0	20.1185908779492						653	14	4	NaN	NaN	NaN	0.00051917	1	27220	50.314	27.358	1	161660			1002	818	853	863	1002	1002		
ALIGDDVGLTSYK	13	Unmodified	_ALIGDDVGLTSYK_			0	0	0	Q53F19	Q53F19	Q53F19	C17orf85	Uncharacterized protein C17orf85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.358825	1350.7031	1.1384	0.00076999	-1.5777	-0.0010671	-0.43931	-0.00029713	676.358425511703	11.527	0.12419	11.527	11.474	11.598	0	474	34	1.00756305028564	0.0221701170870099	1.00756305028564	407.683918855336	0	8.97055545352879						251	15	4	NaN	NaN	NaN	0.027812	1	13908	22.142	16.646	1	54226			1003	1947	854	864	1003	1003		
ALINADELASDVAGAEALLDR	21	Unmodified	_ALINADELASDVAGAEALLDR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.702452	2126.08553	0.6633	0.00047075	-0.48462	-0.00034393	0.17868	0.00012681	710.035968322536	20.013	0.026587	20.013	20.004	20.031	0	465	25	1.01360860968299	0.0161203791387572	1.01360860968299	612.915174923133	0	9.74777138361981						84	4	4	NaN	NaN	NaN	0.031033	1	33696	27.94	25.195	1	41374			1004	1703	855	865	1004	1004		
ALIPLALEGTDVGQTK	16	Unmodified	_ALIPLALEGTDVGQTK_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.45907	1624.90359	1.7706	0.0014403	1.309	0.0010648	3.0796	0.0025052	813.460165381641	14.87	0.20393	14.87	14.808	15.012	0	345	49	1.09397730668811	0.0320456641041635	1.09397730668811	441.891703895267	0	12.9442475880181						578	24	4	NaN	NaN	NaN	0.0043564	1	22340	46.358	44.221	1	204010			1005	2886	856	866	1005	1005		
ALIQYFSPYVSADMHR	16	Unmodified	_ALIQYFSPYVSADMHR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.313694	1896.91925	0.83288	0.00052747	0.65406	0.00041422	1.4869	0.0009417	633.313994901334	14.577	0.11528	14.577	14.542	14.657	0	561	43	0.948993180460448	0.028335804573887	0.948993180460448	574.292367005783	0	17.1476851623478						389	14	4	NaN	NaN	NaN	0.0001027	1	29536	78.864	77.714	1	92273			1006	1626	857	867	1006	1006		
ALISPFDVIK	10	Unmodified	_ALISPFDVIK_			0	0	0	Q9HC21	Q9HC21	Q9HC21	SLC25A19	Mitochondrial thiamine pyrophosphate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.828975	1101.6434	-0.42509	-0.00023458	-0.013998	-7.7246E-06	-0.43909	-0.0002423	551.828030439592	15.845	0.15074	15.845	15.792	15.943	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	361.014678346057	0	9.06355812576783						371	18	4	NaN	NaN	NaN	0.0099301	1	6773	32.14	5.9171	1	116720			1007	2955	858	868	1007	1007		
ALIVLAHSER	10	Unmodified	_ALIVLAHSER_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.827298	1107.64004	1.6734	0.00092844	1.3723	0.00076138	3.0457	0.0016898	554.828135280491	6.25	0.37245	6.25	6.2057	6.5781	0	561	43	0.948993180460448	0.0283318814612601	0.948993180460448	384.837443328688	0	11.4891961825822						886	43	4	NaN	NaN	NaN	3.79E-14	1	6935	171.75	162.99	1	746060			1008	715	859	869	1008	1008		
ALIVVPYAEGVIPDEAK	17	Unmodified	_ALIVVPYAEGVIPDEAK_			0	0	0	Q05519	Q05519	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.495652	1782.97675	2.0134	0.001797	-0.26745	-0.0002387	1.746	0.0015583	892.495079131364	16.103	0.16851	16.103	16.023	16.191	0	222	175	1.17589687683038	0.115544434462485	1.17589687683038	474.625453416785	0	46.6370229202106						1570	20	4	NaN	NaN	NaN	0.0026014	1	26779	35.246	33.772	1	469150			1009	1552	860	870	1009	1009		
ALIVVQQGMTPSAK	14	Unmodified	_ALIVVQQGMTPSAK_			0	0	0	P19388	P19388	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.905419	1441.79629	1.565	0.0011298	-4.6726	-0.0033732	-3.1077	-0.0022434	721.901486650845	9.5228	0.20393	9.5228	9.4076	9.6115	0	435	37	1.03374239103424	0.024143864458734	1.03374239103424	418.008916631169	0	9.76292615376644						417	24	4	NaN	NaN	NaN	0.032391	1	16728	47.334	42.506	1	136240			1010	767	861	871	1010	1010		
ALLADAQLMLDHLK	14	Unmodified	_ALLADAQLMLDHLK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.956959	1550.84905	-1.6125	-0.00083519	-1.0906	-0.00056488	-2.7031	-0.0014001	517.956372895679	16.883	0.10647	16.883	16.83	16.936	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	511.204875994368	0	9.88419381042104						253	13	4	NaN	NaN	NaN	0.0027448	1	20098	55.754	38.023	1	75928			1011	2418	862	872	1011	1011		
ALLAEGVILR	10	Unmodified	_ALLAEGVILR_			0	0	0	Q9Y3D9	Q9Y3D9	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.834591	1053.65463	0.80705	0.00042599	-1.6998	-0.0008972	-0.89273	-0.00047121	527.833778037678	12.822	0.097525	12.822	12.768	12.866	0	624	34	0.906433495720521	0.0223240803246195	0.906433495720521	367.80993360078	0	9.05860004144029						284	12	3	NaN	NaN	NaN	0.00099357	1	5571	90.308	53.739	1	81865			1012	3391	863	873	1012	1012		
ALLAEHLLK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ALLAEHLLK_			1	0	0	Q9NZD2	Q9NZD2	Q9NZD2	GLTP	Glycolipid transfer protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.321317	1048.62808	0.35687	0.00018747	-1.7395	-0.00091379	-1.3826	-0.00072632	525.320276251147	16.129	0.15077	16.129	16.085	16.236	0	609	34	0.916577990479294	0.0223086119453004	0.916577990479294	371.949335362824	0	9.05288308481272						297	18	3	NaN	NaN	NaN	0.0047736	1	5446	82.716	77.408	1	97144			1013	3130	864	874	1013	1013		
ALLANQDSGEVQQDPK	16	Unmodified	_ALLANQDSGEVQQDPK_			0	0	0	Q9NP81	Q9NP81	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.926123	1711.83769	3.2001	0.0027423	-2.376	-0.002036	0.82419	0.00070627	856.924326052824	5.6647	0.097611	5.6647	5.6381	5.7357	0	366	37	1.07994477139643	0.0240640669775463	1.07994477139643	436.036220444101	0	9.71605686820004						223	12	3	NaN	NaN	NaN	1.1635E-08	1	24816	117.77	102.79	1	46716			1014	2980	865	875	1014	1014		
ALLDASETTSTR	12	Unmodified	_ALLDASETTSTR_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.822606	1263.63066	2.0355	0.0012881	-0.11484	-7.2672E-05	1.9207	0.0012154	632.822593754801	6.1614	0.21286	6.1614	6.0993	6.3121	8.8818E-16	537	43	0.965173861991602	0.0283044424712918	0.965173861991602	390.804700467806	0	11.4606389558421						449	25	4	NaN	NaN	NaN	3.0442E-05	1	11324	101.82	95.554	1	181480			1015	1745	866	876	1015	1015		
ALLDQLMGTAR	11	Unmodified	_ALLDQLMGTAR_			0	0	0	Q9NQ29	Q9NQ29	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.823898	1187.63324	0.26328	0.0001566	-4.3407	-0.002582	-4.0774	-0.0024254	595.321180560335	14.932	0.1685	14.932	14.879	15.047	0	588	82	0.93076847747433	0.0547651324433178	0.93076847747433	377.134352514406	0	22.1900647306203						502	20	4	NaN	NaN	NaN	0.063355	1	9094	40.386	29.684	1	122450			1016	2995	867	877	1016	1016		
ALLDSLQLGPDSLTVHLIHEVTK	23	Unmodified	_ALLDSLQLGPDSLTVHLIHEVTK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	625.600886	2498.37444	0.0032941	2.0608E-06	-0.55142	-0.00034497	-0.54813	-0.00034291	625.851272754596	18.834	0.16848	18.834	18.754	18.922	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	736.639548099088	0	16.3387147856996						569	20	6	NaN	NaN	NaN	0.00041298	1	36818	55.866	55.267	1	222910			1017	1771	868	878	1017	1017		
ALLDSLQLGPDSLTVHLIHEVTK	23	Unmodified	_ALLDSLQLGPDSLTVHLIHEVTK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.798756	2498.37444	0.95506	0.00079632	-0.34715	-0.00028945	0.6079	0.00050687	834.132974850808	18.834	0.12412	18.834	18.772	18.896	0	447	34	1.02569221487577	0.0221456308390058	1.02569221487577	619.62228866248	0	13.3782106028766						367	15	4	NaN	NaN	NaN	1.5988E-09	1	36819	52.149	41.095	1	88697			1018	1771	868	878	1018	1018		
ALLDYLDENTETDPSLVFSR	20	Unmodified	_ALLDYLDENTETDPSLVFSR_			0	0	0	Q6KC79	Q6KC79	Q6KC79	NIPBL	Nipped-B-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1149.56044	2297.10632	-0.15602	-0.00017936	5.676	0.0065249	5.52	0.0063456	1149.56796491832	18.346	0.062052	18.346	18.311	18.373	0	63	31	1.28111162701928	0.0197852478439124	1.28111162701928	516.19899071014	0	7.97208045932746						111	8	3	NaN	NaN	NaN	0.002097	1	35614	16.155	13.766	1	17610			1019	2042	869	879	1019	1019		
ALLELQLEPEELYQTFQR	18	Unmodified	_ALLELQLEPEELYQTFQR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.723076	2219.1474	0.64464	0.0004775	-0.16965	-0.00012566	0.475	0.00035184	741.057438038832	19.525	0.097528	19.525	19.481	19.579	0	480	46	1.00353128488872	0.0302528786941803	1.00353128488872	606.656519046341	0	18.2885240909832						616	12	6	NaN	NaN	NaN	5.2157E-05	1	34885	106.97	97.815	1	325590			1020	679	870	880	1020	1020		
ALLELQLEPEELYQTFQR	18	Unmodified	_ALLELQLEPEELYQTFQR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.58098	2219.1474	1.0146	0.0011267	0.15498	0.00017212	1.1695	0.0012989	1111.08279919249	19.525	0.15074	19.525	19.472	19.623	0	93	85	1.26131825079847	0.0554822584335455	1.26131825079847	508.331003668939	0	22.3602188404788						1098	18	6	NaN	NaN	NaN	5.8082E-19	1	34886	146.48	132.11	1	727440			1021	679	870	880	1021	1021		
ALLFIPR	7	Unmodified	_ALLFIPR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.268356	828.522159	-1.2371	-0.00051375	-1.258	-0.00052241	-2.4952	-0.0010362	415.267841637799	12.813	0.2395	12.813	12.751	12.99	0	804	76	0.78414869089473	0.0511114834605692	0.78414869089473	319.302421636711	0	20.8124053918689						797	28	3	NaN	NaN	NaN	0.020912	1	1298	60.001	27.03	1	361260			1022	579	871	881	1022	1022		
ALLLAQWAWQEGSVTR	16	Unmodified	_ALLLAQWAWQEGSVTR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.98886	1827.96317	1.6318	0.0014931	-2.7888	-0.0025517	-1.157	-0.0010586	915.487015461314	17.787	0.08867	17.787	17.77	17.858	0	276	28	1.13998907770044	0.0179773638356826	1.13998907770044	460.04465529531	0	7.25479770875342						168	11	4	NaN	NaN	NaN	0.0015803	1	27924	46.358	36.337	1	39581			1023	1594	872	882	1023	1023		
ALLLVGDVAQAADVAIEHR	19	Unmodified	_ALLLVGDVAQAADVAIEHR_			0	0	0	Q9H269	Q9H269	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.365335	1960.07417	0.046209	3.0237E-05	-0.7561	-0.00049476	-0.70989	-0.00046453	654.699068856582	17.468	0.08868	17.468	17.442	17.53	0	561	19	0.948993180460448	0.0121422325843117	0.948993180460448	574.158130757757	0	7.34627150898154						143	11	3	NaN	NaN	NaN	0.00055802	1	30923	52.662	49.946	1	40420			1024	2862	873	883	1024	1024		
ALLNLPGTQTSGEAK	15	Unmodified	_ALLNLPGTQTSGEAK_			0	0	0	Q96GM8	Q96GM8	Q96GM8	TOE1	Target of EGR1 protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.406837	1498.79912	1.5273	0.0011461	1.4175	0.0010637	2.9448	0.0022098	750.408827742945	10.711	0.13301	10.711	10.649	10.782	0	435	28	1.03374239103424	0.0181066471151929	1.03374239103424	417.857775519317	0	7.31904133107878						237	16	3	NaN	NaN	NaN	0.022258	1	18505	33.751	23.501	1	59469			1025	2545	874	884	1025	1025		
ALLQAILQTEDMLK	14	Unmodified	_ALLQAILQTEDMLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.944741	1585.87493	1.6793	0.0013333	0.57162	0.00045383	2.2509	0.0017871	793.944630129765	19.516	0.097532	19.516	19.49	19.587	0	348	73	1.09197348738011	0.0480618941023994	1.09197348738011	441.174048572251	0	19.4177428740313						497	12	4	NaN	NaN	NaN	6.3327E-08	1	21158	124.46	97.877	1	171990			1026	718	875	885	1026	1026		
ALLQAILQTEDMLK	14	Oxidation (M)	_ALLQAILQTEDM(Oxidation (M))LK_	ALLQAILQTEDM(1)LK	ALLQAILQTEDM(140)LK	0	1	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.942198	1601.86984	1.4836	0.0011897	0.29488	0.00023647	1.7784	0.0014262	801.942537832696	17.849	0.09752	17.849	17.805	17.903	0	270	31	1.14398322290989	0.0199707283140815	1.14398322290989	462.146826592412	0	8.06778327711459						270	12	4	NaN	NaN	NaN	4.6209E-06	1	21658	144.27	117.69	1	85855			1027	718	875	886	1027	1027	241	
ALLQEFDNAVLSK	13	Unmodified	_ALLQEFDNAVLSK_			0	0	0	Q02241	Q02241	Q02241	KIF23	Kinesin-like protein KIF23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.393199	1446.77184	1.134	0.00082143	1.0387	0.0007524	2.1726	0.0015738	724.394080053437	15.278	0.088648	15.278	15.234	15.322	0	414	61	1.04781950764076	0.0401842911414492	1.04781950764076	423.687334533582	0	16.2485762859829						273	11	3	NaN	NaN	NaN	0.033928	1	16903	22.956	20.477	1	60418			1028	1527	876	887	1028	1028		
ALLQEMPLTALLR	13	Unmodified	_ALLQEMPLTALLR_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.931437	1467.84832	0.33129	0.00024348	-0.84182	-0.00061868	-0.51053	-0.0003752	734.930833624506	19.295	0.133	19.295	19.224	19.357	0	426	34	1.03977710643793	0.0221242386339204	1.03977710643793	420.378202780936	0	8.9447513483787						412	16	4	NaN	NaN	NaN	0.00046322	1	17528	76.255	63.673	1	154260			1029	621	877	888	1029	1029		
ALLQMVQQFGVDFEK	15	Unmodified	_ALLQMVQQFGVDFEK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.953098	1751.89164	0.95993	0.00084181	0.77125	0.00067635	1.7312	0.0015182	877.455846042742	19.215	0.062075	19.215	19.188	19.25	0	300	37	1.12400150285141	0.0239945682557239	1.12400150285141	453.741115271891	0	9.68621672942623						201	8	3	NaN	NaN	NaN	3.7068E-08	1	25958	86.838	80.634	1	47120			1030	1167	878	889	1030	1030		
ALLQTHPEAQR	11	Unmodified	_ALLQTHPEAQR_			0	0	0	Q96CP2	Q96CP2	Q96CP2	FLYWCH2	FLYWCH family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.343843	1262.67313	2.5597	0.0016186	-1.3316	-0.00084204	1.2281	0.00077659	632.342953390077	3.7051	0.12418	3.7051	3.6696	3.7938	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	389.989342286483	0	7.36812291569009						210	15	3	NaN	NaN	NaN	1.1905E-05	1	11304	123.42	96.963	1	52125			1031	2495	879	890	1031	1031		
ALLQTHPEAQR	11	Unmodified	_ALLQTHPEAQR_			0	0	0	Q96CP2	Q96CP2	Q96CP2	FLYWCH2	FLYWCH family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.898321	1262.67313	-0.3972	-0.00016758	4.2606	0.0017975	3.8634	0.00163	422.235207100737	3.7051	0.30149	3.7051	3.5012	3.8026	0	783	70	0.798467866007927	0.0470683996317305	0.798467866007927	484.95643103323	0	28.5874035406995						558	35	4	NaN	NaN	NaN	0.00041542	1	11305	74.269	59.506	1	162400			1032	2495	879	890	1032	1032		
ALLSYDGLNQR	11	Unmodified	_ALLSYDGLNQR_			0	0	0	Q9UM22	Q9UM22	Q9UM22	EPDR1	Mammalian ependymin-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.330402	1248.64625	1.4919	0.00093294	-1.7279	-0.0010805	-0.23599	-0.00014757	625.82942531497	10.046	0.16845	10.046	9.9573	10.126	0	528	22	0.971237000454584	0.0141434095952221	0.971237000454584	393.310720077672	0	5.72749453495561						209	20	3	NaN	NaN	NaN	0.0023974	1	10879	79.059	58.825	1	73205			1033	3285	880	891	1033	1033		
ALLTPVAIAAGR	12	Unmodified	_ALLTPVAIAAGR_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.858598	1151.70264	0.17257	9.9548E-05	1.2074	0.00069648	1.3799	0.00079602	576.859203119147	12.405	0.070919	12.405	12.352	12.423	0	591	34	0.928742107665821	0.0222931596374992	0.928742107665821	376.448058118023	0	9.0361108703724						161	9	3	NaN	NaN	NaN	0.0029655	1	8120	65.404	60.497	1	44755			1034	475	881	892	1034	1034		
ALLTTNQLPQPDVFPLFK	18	Unmodified	_ALLTTNQLPQPDVFPLFK_			0	0	0	Q9NY61	Q9NY61	Q9NY61	AATF	Protein AATF	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.56968	2041.12481	0.063391	6.4759E-05	1.0111	0.0010329	1.0745	0.0010977	1022.07239030516	19.153	0.079793	19.153	19.117	19.197	0	132	55	1.23554629282893	0.0357356572157275	1.23554629282893	498.214615707571	0	14.4098418894745						277	10	3	NaN	NaN	NaN	4.4322E-07	1	32376	75.012	57.741	1	52204			1035	3110	882	893	1035	1035		
ALLVEVQLLESK	12	Unmodified	_ALLVEVQLLESK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.403035	1340.79152	0.90748	0.00060928	0.16212	0.00010885	1.0696	0.00071814	671.403359687729	15.775	0.08871	15.775	15.739	15.828	0	483	67	1.00151498427745	0.0443249407401026	1.00151498427745	405.267062997465	0	17.9362653912142						263	11	3	NaN	NaN	NaN	0.002487	1	13646	63.212	45.742	1	55852			1036	63	883	894	1036	1036		
ALLVHDLQK	9	Unmodified	_ALLVHDLQK_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.811116	1035.60768	1.3351	0.00069265	1.147	0.0005951	2.4821	0.0012877	518.811794228424	5.78	0.10638	5.78	5.7445	5.8509	0	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	363.772410719191	0	6.59458088696368						147	13	3	NaN	NaN	NaN	0.00014747	1	5138	110.22	84.964	1	33913			1037	2408	884	895	1037	1037		
ALLVTASQCQQPAENK	16	Unmodified	_ALLVTASQCQQPAENK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.446168	1756.87778	3.3666	0.0029608	-2.8191	-0.0024792	0.54755	0.00048154	879.443834075969	6.4629	0.18623	6.4629	6.4096	6.5959	0	315	133	1.11400032671325	0.0879439561358755	1.11400032671325	449.693795035861	0	35.5007538479737						1420	22	5	NaN	NaN	NaN	2.7373E-33	1	26068	222.48	212.74	1	467210			1038	1516	885	896	1038	1038		
ALLYEDALYTVLHR	14	Unmodified	_ALLYEDALYTVLHR_			0	0	0	Q70J99	Q70J99	Q70J99	UNC13D	Protein unc-13 homolog D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.638395	1675.89336	-1.4351	-0.00080313	0.20627	0.00011544	-1.2288	-0.00068769	559.972857934044	17.344	0.070943	17.344	17.317	17.388	0	699	19	0.85560534332665	0.0122199368605512	0.85560534332665	518.272801073768	0	7.40208199382948						126	9	3	NaN	NaN	NaN	0.0092903	1	23794	36.952	26.164	1	28381			1039	2102	886	897	1039	1039		
ALLYTAVNQLAMGSSSAEDEK	21	Unmodified	_ALLYTAVNQLAMGSSSAEDEK_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1099.53591	2197.05726	0.46554	0.00051187	1.9729	0.0021693	2.4384	0.0026811	1100.03962387263	14.693	0.079798	14.693	14.657	14.737	0	108	46	1.25141139212444	0.0297368765347605	1.25141139212444	504.369927326682	0	11.9851763785672						184	10	3	NaN	NaN	NaN	1.108E-05	1	34646	56.943	53.304	1	30793			1040	2072	887	898	1040	1040		
ALMDSLGPEWR	11	Unmodified	_ALMDSLGPEWR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.81353	1273.61251	0.84385	0.00053822	-0.37249	-0.00023758	0.47136	0.00030064	637.813298265296	13.407	0.21285	13.407	13.318	13.531	0	558	46	0.951016745717027	0.0303492849683255	0.951016745717027	385.039773998318	0	12.2875668360646						560	25	3	NaN	NaN	NaN	0.00080811	1	11586	97.277	70.33	1	203700			1041	1867	888	899	1041	1041		
ALMLQGVDLLADAVAVTMGPK	21	Unmodified	_ALMLQGVDLLADAVAVTMGPK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.07342	2112.13228	0.6175	0.00065275	-1.203	-0.0012716	-0.58545	-0.00061887	1057.57363899198	20.199	0.026622	20.199	20.19	20.217	0	135	46	1.23356193185193	0.0297735860245796	1.23356193185193	497.301465372892	0	12.0030033167452						83	4	3	NaN	NaN	NaN	0.0019924	1	33491	50.519	46.669	1	23105			1042	635	889	900	1042	1042		
ALMLQGVDLLADAVAVTMGPK	21	Unmodified	_ALMLQGVDLLADAVAVTMGPK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.07342	2112.13228	0.43883	0.00046388	-0.079493	-8.403E-05	0.35934	0.00037985	1057.57574214617	20.199	0.070939	20.199	20.19	20.261	0	63	64	1.28111162701928	0.0415632610089882	1.28111162701928	516.470773207489	0	16.7559243844203						420	9	5	NaN	NaN	NaN	2.9926E-37	1	33493	169.21	163.3	1	443750			1043	635	889	900	1043	1043		
ALMLQGVDLLADAVAVTMGPK	21	Oxidation (M)	_ALMLQGVDLLADAVAVTM(Oxidation (M))GPK_	ALMLQGVDLLADAVAVTM(1)GPK	ALM(-95)LQGVDLLADAVAVTM(95)GPK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.383009	2128.1272	1.1799	0.00083822	-0.99579	-0.0007074	0.18415	0.00013082	710.716892718899	20.066	0.10641	20.066	20.057	20.164	0	450	61	1.02367897599655	0.0402564573551203	1.02367897599655	619.000738274519	0	24.3423743257772						400	13	6	NaN	NaN	NaN	1.0926E-05	1	33717	95.677	88.365	2	396970			1044	635	889	901	1044	1044	174;175	
ALMLQGVDLLADAVAVTMGPK	21	Oxidation (M)	_ALMLQGVDLLADAVAVTM(Oxidation (M))GPK_	ALMLQGVDLLADAVAVTM(1)GPK	ALM(-89)LQGVDLLADAVAVTM(89)GPK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.07088	2128.1272	-0.068842	-7.3321E-05	1.4206	0.001513	1.3517	0.0014397	1065.57424282938	20.066	0.03547	20.066	20.057	20.093	0	81	67	1.2692388538616	0.0435573750339335	1.2692388538616	511.659223729514	0	17.5589745222121						193	5	3	NaN	NaN	NaN	1.5496E-07	1	33719	89.636	85.997	2	130410			1045	635	889	901	1045	1045	174;175	
ALMLQGVDLLADAVAVTMGPK	21	2 Oxidation (M)	_ALM(Oxidation (M))LQGVDLLADAVAVTM(Oxidation (M))GPK_	ALM(1)LQGVDLLADAVAVTM(1)GPK	ALM(120)LQGVDLLADAVAVTM(120)GPK	0	2	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.714647	2144.12211	1.5706	0.0011241	-0.92655	-0.00066314	0.64405	0.00046096	716.048377235019	19.853	0.09752	19.853	19.827	19.924	0	438	43	1.03173026378327	0.0281756225975058	1.03173026378327	623.839061436444	0	17.036481892236						409	12	6	NaN	NaN	NaN	2.4433E-08	1	33943	117.8	107.89	1	213360			1046	635	889	902	1046	1046	174;175	
ALMLQGVDLLADAVAVTMGPK	21	2 Oxidation (M)	_ALM(Oxidation (M))LQGVDLLADAVAVTM(Oxidation (M))GPK_	ALM(1)LQGVDLLADAVAVTM(1)GPK	ALM(120)LQGVDLLADAVAVTM(120)GPK	0	2	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.06833	2144.12211	0.99355	0.0010662	0.31105	0.00033378	1.3046	0.0013999	1073.57002771388	19.853	0.079785	19.853	19.827	19.907	0	69	91	1.27715511956461	0.0594289997864927	1.27715511956461	514.825551271067	0	23.956030953389						311	10	2	NaN	NaN	NaN	6.0351E-16	1	33944	123.83	121.72	1	175200			1047	635	889	902	1047	1047	174;175	
ALMQVVDFLSR	11	Unmodified	_ALMQVVDFLSR_			0	0	0	Q9GZT8	Q9GZT8	Q9GZT8	NIF3L1	NIF3-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.847373	1277.68019	0.066753	4.2712E-05	0.37115	0.00023748	0.43791	0.00028019	639.847271145218	17.486	0.09753	17.486	17.415	17.513	0	552	25	0.955063035883597	0.0161851618294636	0.955063035883597	386.664793184435	0	6.55269025845632						159	12	3	NaN	NaN	NaN	0.0077712	1	11702	57.888	34.313	1	39507			1048	2832	890	903	1048	1048		
ALNALCDGLIDELNQALK	18	Unmodified	_ALNALCDGLIDELNQALK_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.678702	1970.01428	0.25822	0.00016982	-0.83116	-0.00054663	-0.57294	-0.00037681	658.012179139157	19.756	0.044336	19.756	19.738	19.782	0	579	28	0.936845902828289	0.0182297522282956	0.936845902828289	566.788718996665	0	11.02894070616						130	6	4	NaN	NaN	NaN	0.00045801	1	31112	69.641	59.619	1	31657			1049	901	891	904	1049	1049		
ALNALCDGLIDELNQALK	18	Unmodified	_ALNALCDGLIDELNQALK_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.014415	1970.01428	1.6936	0.00167	-1.8944	-0.0018679	-0.20079	-0.00019799	986.012584140189	19.756	0.08867	19.756	19.72	19.809	0	219	73	1.17788915118882	0.0478047656707101	1.17788915118882	475.081101386657	0	19.2812207357969						549	11	5	NaN	NaN	NaN	1.8145E-10	1	31113	76.196	69.34	1	172540			1050	901	891	904	1050	1050		
ALNENLQDTVEK	12	Unmodified	_ALNENLQDTVEK_			0	0	0	Q9UKK3	Q9UKK3	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.348988	1372.68342	1.4863	0.0010216	3.8557	0.0026502	5.342	0.0036718	687.35168892596	6.8619	0.088677	6.8619	6.8441	6.9328	0	498	31	0.991429299781895	0.0201755538999089	0.991429299781895	401.090725534679	0	8.16218317691312						130	11	2	NaN	NaN	NaN	0.0041929	1	14568	64.906	57.259	1	41958			1051	3263	892	905	1051	1051		
ALNHEIEELEK	11	Unmodified	_ALNHEIEELEK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.840799	1323.66705	1.6394	0.0010867	-0.12711	-8.4254E-05	1.5123	0.0010024	662.840387638364	7.1368	0.14186	7.1368	7.0925	7.2343	0	474	28	1.00756305028564	0.0181416924529938	1.00756305028564	407.7682481723	0	7.34207764798515						367	17	4	NaN	NaN	NaN	2.3071E-07	1	13092	135.28	94.78	1	121220			1052	423	893	906	1052	1052		
ALNLFQGSVEDTTGSQSLAALLNK	24	Unmodified	_ALNLFQGSVEDTTGSQSLAALLNK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	826.434254	2476.28093	1.478	0.0012215	1.0561	0.00087276	2.5341	0.0020943	826.768874434915	18.639	0.05319	18.639	18.612	18.665	0	327	25	1.10599442759226	0.0160184153365035	1.10599442759226	668.165945959088	0	9.67722745166145						121	7	4	NaN	NaN	NaN	0.017454	1	36716	36.902	32.744	1	21816			1053	1063	894	907	1053	1053		
ALNVEPDGTGLTCSLAPNIISQL	23	Unmodified	_ALNVEPDGTGLTCSLAPNIISQL_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1192.11231	2382.21008	0.24073	0.00028697	0.39731	0.00047364	0.63804	0.00076061	1192.61371351719	19.915	0.026595	19.915	19.907	19.933	0	81	37	1.2692388538616	0.0237488006707973	1.2692388538616	511.305219760215	0	9.56706116353075						108	4	4	NaN	NaN	NaN	0.023618	1	36264	28.664	27.569	1	20036			1054	895	895	908	1054	1054		
ALPASETPK	9	Unmodified	_ALPASETPK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.2531	912.491647	0.21085	9.6414E-05	-1.9542	-0.00089355	-1.7433	-0.00079714	457.252726163048	3.1552	0.31916	3.1552	3.0755	3.3947	0	738	85	0.829104889055312	0.057193125943246	0.829104889055312	337.102311826708	0	23.2539154340677						667	37	4	NaN	NaN	NaN	0.045907	1	2549	30.593	13.197	1	139670			1055	378	896	909	1055	1055		
ALPAVQQNNLDEDLIR	16	Unmodified	_ALPAVQQNNLDEDLIR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.978689	1807.94283	2.0713	0.0018745	2.6843	0.0024292	4.7556	0.0043037	904.981470158024	12.573	0.28377	12.573	12.511	12.795	0	273	100	1.14198628764525	0.0659080129686265	1.14198628764525	460.889040947381	0	26.5995145620295						1586	33	6	NaN	NaN	NaN	4.6203E-13	1	27437	188.88	164.14	1	1309600			1056	804	897	910	1056	1056		
ALPAVQQNNLDEDLIRK	17	Unmodified	_ALPAVQQNNLDEDLIRK_			0	0	1	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.026171	1936.03779	1.9818	0.0019204	-1.1016	-0.0010675	0.88016	0.0008529	969.024931082108	10.33	0.079813	10.33	10.294	10.374	0	159	22	1.21767724410157	0.0139076833914922	1.21767724410157	491.189228554404	0	5.61011081478017						135	10	3	NaN	NaN	NaN	2.776E-09	1	30447	82.437	75.581	1	27695			1057	804	898	911	1057	1057		
ALPAVQQNNLDEDLIRK	17	Unmodified	_ALPAVQQNNLDEDLIRK_			0	0	1	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.353206	1936.03779	1.0935	0.00070678	-0.0056497	-3.6517E-06	1.0878	0.00070312	646.687632742662	10.33	0.15958	10.33	10.268	10.427	0	612	40	0.914549654013882	0.0263720347724746	0.914549654013882	553.367415586819	0	15.9569517759487						478	19	5	NaN	NaN	NaN	7.5543E-07	1	30448	108.24	105.53	1	215990			1058	804	898	911	1058	1058		
ALPFWNEEIVPQIK	14	Unmodified	_ALPFWNEEIVPQIK_			0	0	0	P18669;P15259;Q8N0Y7	P18669	P18669	PGAM1;PGAM2;PGAM4	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.458873	1682.90319	1.7916	0.0015093	-0.91516	-0.00077099	0.87642	0.00073835	842.959673943669	17.832	0.27484	17.832	17.752	18.027	0	375	61	1.07392668217569	0.040117848274219	1.07392668217569	433.666236455574	0	16.2001341102076						1186	32	5	NaN	NaN	NaN	3.1919E-08	1	23990	115.04	102.46	1	576790			1059	757	899	912	1059	1059		
ALPFWNEEIVPQIK	14	Unmodified	_ALPFWNEEIVPQIK_			0	0	0	P18669;P15259;Q8N0Y7	P18669	P18669	PGAM1;PGAM2;PGAM4	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2;Probable phosphoglycerate mutase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.458873	1682.90319	2.223	0.0018728	1.0346	0.00087159	3.2576	0.0027444	842.459902951616	17.841	0.34581	17.841	17.725	18.071	0	297	73	1.12600091227925	0.0479957663241226	1.12600091227925	454.694513315634	0	19.3813445193245						1773	40	6	NaN	NaN	NaN	2.1109E-14	1	23991	203.8	194.06	1	3019900			1060	757	899	912	1060	1060		
ALPLALVLHELGAGR	15	Unmodified	_ALPLALVLHELGAGR_			0	0	0	P19971	P19971	P19971	TYMP	Thymidine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.643592	1528.90895	-1.7423	-0.00088968	1.1108	0.00056723	-0.63147	-0.00032246	510.643770640665	18.745	0.079808	18.745	18.701	18.781	0	729	19	0.835224628594324	0.0122369277826641	0.835224628594324	506.325591674758	0	7.4182076147182						123	10	3	NaN	NaN	NaN	0.00022988	1	19403	39.702	39.702	1	24924			1061	774	900	913	1061	1061		
ALPLEAEVAPVK	12	Unmodified	_ALPLEAEVAPVK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.863546	1235.71254	1.2671	0.00078418	-2.5172	-0.0015578	-1.25	-0.00077359	618.863863037571	11.146	0.14187	11.146	11.075	11.216	0	546	31	0.959108205975751	0.0202230534711471	0.959108205975751	388.443520317273	0	8.19043569114814						346	17	3	NaN	NaN	NaN	0.0063732	1	10503	33.723	24.209	1	87524			1062	869	901	914	1062	1062		
ALPLIVGAQLIHADK	15	Unmodified	_ALPLIVGAQLIHADK_			0	0	0	Q5SSJ5	Q5SSJ5	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.969408	1557.92426	1.5121	0.0011794	-0.54951	-0.0004286	0.96255	0.00075076	779.969070742375	14.666	0.15962	14.666	14.551	14.71	0	255	31	1.15396378101328	0.0199542576953273	1.15396378101328	466.291487023695	0	8.06307844864779						441	19	4	NaN	NaN	NaN	4.6697E-08	1	20307	84.999	75.257	1	141700			1063	1980	902	915	1063	1063		
ALQAAIQQLAEAQPEATAK	19	Unmodified	_ALQAAIQQLAEAQPEATAK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.526004	1951.03745	1.9105	0.0018656	-0.24932	-0.00024347	1.6612	0.0016222	977.02752667527	12.999	0.10642	12.999	12.955	13.061	0	183	61	1.20177511391933	0.0397935554702979	1.20177511391933	484.748065498251	0	16.0511303738139						487	13	4	NaN	NaN	NaN	0.00023994	1	30741	74.643	66.995	1	119690			1064	2420	903	916	1064	1064		
ALQAAIQQLAEAQPEATAK	19	Unmodified	_ALQAAIQQLAEAQPEATAK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.526004	1951.03745	1.2708	0.001241	0.43499	0.00042478	1.7058	0.0016658	977.028396325959	12.999	0.070949	12.999	12.963	13.034	0	126	79	1.23951419873743	0.0515545434111191	1.23951419873743	499.970502075833	0	20.7950429126208						409	9	3	NaN	NaN	NaN	1.4322E-07	1	30742	116.36	111.54	1	78437			1065	2420	903	916	1065	1065		
ALQALEELR	9	Unmodified	_ALQALEELR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.798206	1041.58186	0.54221	0.00028292	-0.46304	-0.00024162	0.079166	4.1309E-05	521.797903433763	10.321	0.14185	10.321	10.277	10.418	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	359.622313332142	0	9.89799147997013						279	17	3	NaN	NaN	NaN	0.022723	1	5264	45.489	33.84	1	92885			1066	1816	904	917	1066	1066		
ALQAQEIECR	10	Unmodified	_ALQAQEIECR_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.300787	1216.58702	2.0346	0.0012397	-3.0049	-0.0018309	-0.97026	-0.00059118	609.2980973336	5.1504	0.25716	5.1504	5.044	5.3012	0	591	40	0.928742107665821	0.0263574177216448	0.928742107665821	376.21042614549	0	10.6767371386618						522	30	4	NaN	NaN	NaN	4.2182E-05	1	9914	112.8	87.548	1	253390			1067	2289	905	918	1067	1067		
ALQASALK	8	Unmodified	_ALQASALK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	401.245078	800.475603	-0.42615	-0.00017099	-0.39058	-0.00015672	-0.81672	-0.00032771	401.244999277417	3.9002	0.12413	3.9002	3.8647	3.9888	0	825	22	0.769815552739974	0.0143391285682861	0.769815552739974	313.644697198358	0	5.84216780484752						143	15	2	NaN	NaN	NaN	0.044329	1	994	42.835	6.2652	1	33622			1068	504	906	919	1068	1068		
ALQATVGNSYK	11	Unmodified	_ALQATVGNSYK_			0	0	0	P11279	P11279	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.306395	1150.59824	1.6334	0.00094131	-1.0958	-0.0006315	0.53758	0.00030981	576.306038598544	4.7071	0.20393	4.7071	4.6627	4.8667	0	612	58	0.914549654013882	0.0385223886252621	0.914549654013882	370.699635374847	0	15.614499830029						486	24	4	NaN	NaN	NaN	0.010033	1	8090	64.064	51.998	1	273450			1069	649	907	920	1069	1069		
ALQDEWDAVMLHSFTLR	17	Unmodified	_ALQDEWDAVMLHSFTLR_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.003408	2030.9884	0.3371	0.00022855	-1.2821	-0.00086924	-0.94495	-0.00064068	678.336871895412	18.541	0.11528	18.541	18.497	18.612	0	561	43	0.948993180460448	0.028335804573887	0.948993180460448	574.017299292966	0	17.1394719684962						450	14	5	NaN	NaN	NaN	5.2372E-05	1	32171	55.782	51.228	1	135620			1070	3288	908	921	1070	1070		
ALQDLENAASGDATVR	16	Unmodified	_ALQDLENAASGDATVR_			0	0	0	Q9NQG5	Q9NQG5	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.90519	1629.79583	2.2656	0.0018485	-0.73959	-0.00060344	1.526	0.0012451	815.904615272978	9.7179	0.14189	9.7179	9.647	9.7889	0	387	37	1.06589869032374	0.0240873003284932	1.06589869032374	430.538953581526	0	9.72936844015038						329	17	3	NaN	NaN	NaN	2.0154E-08	1	22471	146.37	126.03	1	104050			1071	3000	909	922	1071	1071		
ALQEFDLALR	10	Unmodified	_ALQEFDLALR_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.324588	1174.63462	0.48106	0.00028302	-0.93579	-0.00055055	-0.45473	-0.00026753	588.323731600941	13.38	0.12418	13.38	13.327	13.451	0	615	46	0.912521036363781	0.0304250551653156	0.912521036363781	369.787712239457	0	12.3293722511578						331	15	4	NaN	NaN	NaN	0.0023353	1	8732	39.01	23.428	1	118370			1072	2546	910	923	1072	1072		
ALQEGEGDLSISADR	15	Unmodified	_ALQEGEGDLSISADR_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.878641	1559.74273	2.2196	0.0017332	0.40033	0.00031261	2.6199	0.0020458	781.881934940456	8.068	0.23067	8.068	8.0059	8.2366	0	423	43	1.04178812298108	0.0281484102411274	1.04178812298108	420.959433712077	0	11.3740390906869						540	27	5	NaN	NaN	NaN	1.8335E-06	1	20334	90.376	52.872	1	117830			1073	1137	911	924	1073	1073		
ALQEWILETDGVSLMR	16	Unmodified	_ALQEWILETDGVSLMR_			0	0	0	P24928	P24928	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.979844	1859.94513	0.60954	0.00056747	2.5262	0.0023518	3.1357	0.0029193	931.483241878488	18.062	0.1064	18.062	18.027	18.133	0	255	28	1.15396378101328	0.0179575970541841	1.15396378101328	465.623849522189	0	7.24588206849563						148	13	3	NaN	NaN	NaN	1.5075E-07	1	28701	63.766	58.378	1	26319			1074	833	912	925	1074	1074		
ALQFLEEVK	9	Unmodified	_ALQFLEEVK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.802957	1075.59136	0.69372	0.00037378	0.43978	0.00023695	1.1335	0.00061073	538.803423590738	12.352	0.17735	12.352	12.272	12.449	0	642	73	0.894250814548268	0.0487510374716118	0.894250814548268	362.7709826707	0	19.7768472581449						859	21	4	NaN	NaN	NaN	0.00081134	1	6112	93.467	44.142	1	771770			1075	1016	913	926	1075	1075		
ALQGASQIIAEIR	13	Unmodified	_ALQGASQIIAEIR_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.393533	1368.77251	1.5715	0.0010771	-1.6052	-0.0011002	-0.033643	-2.3058E-05	685.392175676589	13.496	0.17734	13.496	13.434	13.611	0	438	67	1.03173026378327	0.0442943392475985	1.03173026378327	417.406719530207	0	17.9201439446987						471	21	3	NaN	NaN	NaN	2.9765E-05	1	14462	119.94	105.48	1	120130			1076	79	914	927	1076	1076		
ALQHMTDFAIQFNK	14	Unmodified	_ALQHMTDFAIQFNK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.280214	1662.81881	-1.5504	-0.00086092	-0.79754	-0.00044286	-2.348	-0.0013038	555.279779801009	11.908	0.079818	11.908	11.873	11.953	0	714	22	0.845418525735192	0.0142655083494234	0.845418525735192	512.135241667135	0	8.64171927115399						149	10	3	NaN	NaN	NaN	0.0001857	1	23421	69.276	60.014	1	43658			1077	1423	915	928	1077	1077		
ALQHMTDFAIQFNK	14	Unmodified	_ALQHMTDFAIQFNK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.416682	1662.81881	1.9313	0.0016076	-0.11611	-9.665E-05	1.8152	0.001511	832.417013085065	11.908	0.1419	11.908	11.855	11.997	-1.7764E-15	342	40	1.09598084995137	0.0260388926708219	1.09598084995137	442.615663429446	0	10.5158970204411						275	17	3	NaN	NaN	NaN	1.0115E-05	1	23422	77.157	74.856	1	88175			1078	1423	915	928	1078	1078		
ALQLEEERK	9	Unmodified	_ALQLEEERK_			0	0	1	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	372.540022	1114.59824	-0.14782	-5.5067E-05	-0.094676	-3.5271E-05	-0.24249	-9.0338E-05	372.539958198127	3.4124	0.15083	3.4124	3.3681	3.5189	4.4409E-16	903	22	0.716455593386714	0.0143912031674811	0.716455593386714	435.769331020948	0	8.75315237227102						175	18	3	NaN	NaN	NaN	0.034238	1	7120	60.589	0	1	39642			1079	710	916	929	1079	1079		
ALQLLHCFPLDIR	13	Unmodified	_ALQLLHCFPLDIR_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.43996	1594.86537	1.135	0.00090625	-0.13506	-0.00010784	0.99996	0.00079841	798.44002416722	16.041	0.097547	16.041	16.014	16.111	0	315	22	1.11400032671325	0.0140093594981896	1.11400032671325	450.051267903081	0	5.65972006783193						134	12	3	NaN	NaN	NaN	0.02112	1	21438	43.306	38.778	1	20193			1080	3	917	930	1080	1080		
ALQPLEEGEDEEK	13	Unmodified	_ALQPLEEGEDEEK_			0	0	0	Q14764	Q14764	Q14764	MVP	Major vault protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.849018	1485.68348	1.7316	0.0012881	0.38323	0.00028507	2.1149	0.0015731	743.848653056958	6.454	0.10641	6.454	6.4185	6.5249	0	453	79	1.02166545906632	0.0523045183704234	1.02166545906632	413.009415252035	0	21.1441606012107						367	13	4	NaN	NaN	NaN	0.0063259	1	18082	57.003	48.529	1	75564			1081	1774	918	931	1081	1081		
ALQQGLVGLELK	12	Unmodified	_ALQQGLVGLELK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.88227	1267.74999	1.1779	0.00074784	-0.15027	-9.5404E-05	1.0276	0.00065244	634.882292817887	12.742	0.070955	12.742	12.706	12.777	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.699784543879	0	7.35965314791599						139	9	3	NaN	NaN	NaN	0.0065392	1	11452	48.785	34.791	1	27255			1082	1298	919	932	1082	1082		
ALQQYTLEPSEK	12	Unmodified	_ALQQYTLEPSEK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.861731	1405.70891	2.1801	0.0015345	-0.71536	-0.00050352	1.4647	0.0010309	703.862291013901	7.3319	0.23054	7.3319	7.2875	7.5181	0	453	67	1.02166545906632	0.0443249407401026	1.02166545906632	413.226189948515	0	17.9278121024716						519	27	4	NaN	NaN	NaN	1.1705E-05	1	15642	123.42	84.381	1	173600			1083	3452	920	933	1083	1083		
ALQSVGQIVGEVLK	14	Unmodified	_ALQSVGQIVGEVLK_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.924666	1439.83478	1.1422	0.00082342	0.37568	0.00027084	1.5179	0.0010943	720.925171941811	17.202	0.23057	17.202	17.14	17.371	0	423	58	1.04178812298108	0.0381987855157915	1.04178812298108	421.267760059934	0	15.4464391139345						842	27	5	NaN	NaN	NaN	2.5611E-08	1	16679	135.21	119.33	1	511940			1084	1390	921	934	1084	1084		
ALQYACGNALVCDNVEDAR	19	Unmodified	_ALQYACGNALVCDNVEDAR_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.98332	2137.95209	1.4191	0.0015184	-0.3449	-0.00036903	1.0742	0.0011494	1069.9833927587	10.41	0.026598	10.41	10.401	10.427	0	135	13	1.23356193185193	0.00793798819941416	1.23356193185193	497.262228200026	0	3.1998893590532						26	4	2	NaN	NaN	NaN	8.4185E-11	1	33846	98.895	98.46	1	4250.3			1085	1764	922	935	1085	1085		
ALSAIADLLTNEHER	15	Unmodified	_ALSAIADLLTNEHER_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.624926	1651.85295	-0.99671	-0.00054981	-0.61754	-0.00034065	-1.6142	-0.00089046	551.624483413626	13.895	0.070928	13.895	13.859	13.93	0	750	25	0.820941264895493	0.0163317905819258	0.820941264895493	497.334724154711	0	9.89396795037288						128	9	3	NaN	NaN	NaN	0.00014671	1	23111	75.5	59.213	1	29956			1086	276	923	936	1086	1086		
ALSAIADLLTNEHER	15	Unmodified	_ALSAIADLLTNEHER_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.933751	1651.85295	2.7928	0.0023095	1.1732	0.00097015	3.966	0.0032796	826.934837773437	13.895	0.15074	13.895	13.841	13.992	0	270	40	1.14398322290989	0.0259565934896919	1.14398322290989	462.02692807509	0	10.4832351674102						451	18	4	NaN	NaN	NaN	5.6274E-17	1	23113	156.73	145.25	1	184720			1087	276	923	936	1087	1087		
ALSAVHSPTFCQLACGQDGQLK	22	Unmodified	_ALSAVHSPTFCQLACGQDGQLK_			0	0	0	Q8IY67	Q8IY67	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	796.719343	2387.1362	1.2298	0.00097984	0.96277	0.00076705	2.1926	0.0017469	797.054549267841	10.676	0.079799	10.676	10.631	10.711	0	525	49	0.973257487423603	0.0323300376824983	0.973257487423603	588.097887131914	0	19.5356594710655						352	10	4	NaN	NaN	NaN	1.8166E-11	1	36280	140.3	132.44	1	64516			1088	2219	924	937	1088	1088		
ALSDDGVSDLEDPTLTPLK	19	Unmodified	_ALSDDGVSDLEDPTLTPLK_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.499317	1984.98408	1.9792	0.0019664	-1.2902	-0.0012818	0.68909	0.00068461	993.999759867959	14.196	0.20393	14.196	14.063	14.267	0	198	91	1.1918274123006	0.059657603099011	1.1918274123006	480.677491340431	0	24.0605868778114						727	24	3	NaN	NaN	NaN	0.0027769	1	31365	51.829	46.441	1	225730			1089	259	925	938	1089	1089		
ALSDHHIYLEGTLLK	15	Unmodified	_ALSDHHIYLEGTLLK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.64555	1708.91482	1.2972	0.00074022	-0.44688	-0.00025501	0.85027	0.0004852	570.645385698884	10.489	0.33703	10.489	10.436	10.773	0	645	97	0.892219381832517	0.0649833887331899	0.892219381832517	540.365774011472	0	39.3566872292964						1273	39	6	NaN	NaN	NaN	4.491E-07	1	24730	159.44	142.45	1	1371000			1090	504	926	939	1090	1090		
ALSDHHVYLEGTLLK	15	Unmodified	_ALSDHHVYLEGTLLK_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.456862	1694.89917	1.5782	0.001339	0.32608	0.00027666	1.9043	0.0016157	848.457111185578	9.5317	0.088688	9.5317	9.5051	9.5938	0	285	28	1.13399579921816	0.0179823106306443	1.13399579921816	457.896488884746	0	7.26108236510561						153	11	3	NaN	NaN	NaN	4.2035E-05	1	24350	45.183	36.809	1	29271			1091	615	927	940	1091	1091		
ALSEIAGMTLPYDTLDQVR	19	Unmodified	_ALSEIAGMTLPYDTLDQVR_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.0328	2092.05106	1.2499	0.0013087	-6.2042	-0.006496	-4.9543	-0.0051873	1047.02590266018	17.309	0.25715	17.309	17.202	17.459	0	159	106	1.21767724410157	0.0695194374036938	1.21767724410157	490.928465470099	0	28.0280106163281						1584	30	5	NaN	NaN	NaN	9.198E-08	1	33218	106.97	63.453	1	416970			1092	877	928	941	1092	1092		
ALSEIAGMTLPYDTLDQVR	19	Oxidation (M)	_ALSEIAGM(Oxidation (M))TLPYDTLDQVR_	ALSEIAGM(1)TLPYDTLDQVR	ALSEIAGM(52)TLPYDTLDQVR	0	1	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.03026	2108.04597	0.7283	0.00076838	0.90019	0.00094973	1.6285	0.0017181	1055.53209529351	14.843	0.088638	14.843	14.79	14.879	0	144	37	1.22760721615852	0.0238270338663331	1.22760721615852	494.907125165794	0	9.60581583164327						250	11	4	NaN	NaN	NaN	0.0019626	1	33442	51.829	40.15	1	47140			1093	877	928	942	1093	1093	300	
ALSGTSPDDVQPGPSVGPPSK	21	Unmodified	_ALSGTSPDDVQPGPSVGPPSK_			0	0	0	Q9Y314	Q9Y314	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.997276	1991.98	2.4843	0.0024769	-1.2724	-0.0012685	1.212	0.0012083	996.996129126994	7.4649	0.15959	7.4649	7.3851	7.5447	0	222	61	1.17589687683038	0.0398701495436597	1.17589687683038	474.240959634576	0	16.0796906199171						719	19	4	NaN	NaN	NaN	0.00069643	1	31493	64.21	60.957	1	171730			1094	3363	929	943	1094	1094		
ALSMYEEAFQNTSDSDR	17	Unmodified	_ALSMYEEAFQNTSDSDR_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.420544	1962.82654	1.4658	0.00144	1.2729	0.0012505	2.7387	0.0026905	982.923359866267	11.598	0.14194	11.598	11.562	11.704	0	255	40	1.15396378101328	0.0259387539969269	1.15396378101328	465.443132851449	0	10.4622130444958						391	17	4	NaN	NaN	NaN	8.4614E-19	1	30969	130.65	125.56	1	95636			1095	1227	930	944	1095	1095		
ALSNLESIPGGYNALR	16	Unmodified	_ALSNLESIPGGYNALR_			0	0	0	Q9UMX0;Q9NRR5	Q9UMX0;Q9NRR5	Q9UMX0	UBQLN1;UBQLN4	Ubiquilin-1;Ubiquilin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.944118	1673.87368	3.3385	0.0027975	-0.64287	-0.00053869	2.6956	0.0022588	837.944322782112	12.804	0.17737	12.804	12.751	12.928	0	348	67	1.09197348738011	0.044081013383825	1.09197348738011	440.973208159348	0	17.8012983972878						1030	21	4	NaN	NaN	NaN	1.1882E-06	1	23741	124.06	91.512	1	571610			1096	3289;3025	931	945	1096	1096		
ALSPLEEWLR	10	Unmodified	_ALSPLEEWLR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.332413	1212.65027	0.35479	0.00021548	-2.2354	-0.0013576	-1.8806	-0.0011421	607.330911912495	16.546	0.23054	16.546	16.475	16.706	0	576	76	0.938871150116794	0.05061719731732	0.938871150116794	380.32729612338	0	20.5045194866676						1121	27	4	NaN	NaN	NaN	0.00029684	1	9810	111.39	69.317	1	442350			1097	858	932	946	1097	1097		
ALSQGVESVK	10	Unmodified	_ALSQGVESVK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.282389	1016.55022	1.2423	0.00063269	-0.95649	-0.00048713	0.28583	0.00014557	509.282033261354	4.0686	0.13303	4.0686	4.0243	4.1573	0	696	40	0.857641857947968	0.0264710186728029	0.857641857947968	348.175220372744	0	10.7463886871685						246	16	3	NaN	NaN	NaN	0.0038918	1	4668	49.16	14.228	1	92380			1098	211	933	947	1098	1098		
ALSSDSILSPAPDAR	15	Unmodified	_ALSSDSILSPAPDAR_			0	0	0	Q8IVT2	Q8IVT2	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.388645	1498.76274	1.416	0.0010626	-2.7909	-0.0020942	-1.3749	-0.0010317	750.38772635518	9.5317	0.16844	9.5317	9.443	9.6115	0	426	49	1.03977710643793	0.0321740540769211	1.03977710643793	420.297228554528	0	13.0053505469257						655	20	5	NaN	NaN	NaN	0.0010224	1	18497	82.437	59.481	1	168620			1099	2199	934	948	1099	1099		
ALSSLELSSHLAK	13	Unmodified	_ALSSLELSSHLAK_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.380091	1354.74563	1.7121	0.0011614	0.16733	0.00011351	1.8794	0.001275	678.380044943126	8.5648	0.062052	8.5648	8.5293	8.5914	0	405	25	1.05384839605172	0.0160737100321473	1.05384839605172	426.399171697296	0	6.50360779547435						136	8	3	NaN	NaN	NaN	0.0055634	1	14046	60.547	41.224	1	29816			1100	2687	935	949	1100	1100		
ALSSMQLYLTKNSNR	15	Oxidation (M)	_ALSSM(Oxidation (M))QLYLTKNSNR_	ALSSM(1)QLYLTKNSNR	ALSSM(41)QLYLTKNSNR	0	1	1		REV__A0A0J9YX35	REV__A0A0J9YX35			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.448711	1740.88287	2.2648	0.0019737	-8.5936	-0.0074889	-6.3288	-0.0055152	871.441567862377	12.21	0.15964	12.21	12.157	12.316	0	336	70	1.09998710857178	0.0460688297770868	1.09998710857178	444.068974132127	0	18.598161577676						566	19	4	NaN	NaN	NaN	0.073069	1	25631	40.861	27.686	1	180700	+		1101	3479	936	950	1101	1101	652	
ALSSVGLHMTK	11	Unmodified	_ALSSVGLHMTK_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.313166	1142.61178	2.0582	0.0011779	0.33987	0.00019451	2.3981	0.0013725	572.31344093297	6.0195	0.10641	6.0195	5.9929	6.0993	0	537	28	0.965173861991602	0.0181919339867516	0.965173861991602	391.251811043296	0	7.3744507585501						175	13	3	NaN	NaN	NaN	0.0078348	1	7861	51.872	41.17	1	46986			1102	1793	937	951	1102	1102		
ALSTDPAAPNLK	12	Unmodified	_ALSTDPAAPNLK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.327328	1196.6401	0.90489	0.00054232	0.88724	0.00053175	1.7921	0.0010741	599.32774296105	6.5249	0.12413	6.5249	6.4806	6.6047	0	615	61	0.912521036363781	0.0405414565630254	0.912521036363781	369.708762857812	0	16.4254095555936						316	15	2	NaN	NaN	NaN	0.012361	1	9360	41.796	28.522	1	93956			1103	3406	938	952	1103	1103		
ALSVGNIDDALQCYSEAIK	19	Unmodified	_ALSVGNIDDALQCYSEAIK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.00679	2065.99902	1.293	0.001337	1.9352	0.0020011	3.2283	0.003338	1034.5105241213	17.442	0.27487	17.442	17.362	17.637	0	120	103	1.2434810169581	0.0674637399422695	1.2434810169581	501.373377264496	0	27.2014792959955						2614	32	7	NaN	NaN	NaN	2.4365E-57	1	32812	284.86	248.4	1	2747500			1104	934	939	953	1104	1104		
ALTDAGCNLNPLQYIK	16	Unmodified	_ALTDAGCNLNPLQYIK_			0	0	0	Q8WVM8	Q8WVM8	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.958911	1789.90327	1.6899	0.0015141	1.6291	0.0014596	3.319	0.0029737	896.96417670352	16.023	0.27491	16.023	15.943	16.218	0	270	79	1.14398322290989	0.051959655883187	1.14398322290989	461.730398191695	0	20.9717696207307						604	32	4	NaN	NaN	NaN	2.1649E-06	1	26977	104.04	99.225	1	148350			1105	2381	940	954	1105	1105		
ALTGGIAHLFK	11	Unmodified	_ALTGGIAHLFK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.332216	1126.64988	1.6575	0.00093539	0.32565	0.00018378	1.9832	0.0011192	564.33238707963	10.809	0.12414	10.809	10.782	10.906	0	519	34	0.97729762293174	0.0222192115744939	0.97729762293174	396.233327353614	0	9.00850664808235						236	15	3	NaN	NaN	NaN	0.00060133	1	7447	81.163	55.91	1	96111			1106	607	941	955	1106	1106		
ALTGHLEEVVLALLK	15	Unmodified	_ALTGHLEEVVLALLK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.990658	1604.95014	-0.22053	-0.0001182	-0.4903	-0.0002628	-0.71083	-0.000381	535.990510456245	19.845	0.15958	19.845	19.827	19.986	0	699	37	0.85560534332665	0.0244398769037869	0.85560534332665	518.460404061382	0	14.8095246874939						319	19	5	NaN	NaN	NaN	1.4942E-06	1	21760	101.64	97.661	1	186390			1107	506	942	956	1107	1107		
ALTGHLEEVVLALLK	15	Unmodified	_ALTGHLEEVVLALLK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.482348	1604.95014	1.9356	0.0015552	0.30481	0.00024491	2.2404	0.0018001	803.482786209889	19.845	0.13298	19.845	19.827	19.96	0	195	97	1.19381749893585	0.0637484775584958	1.19381749893585	482.270963761491	0	25.7527132395599						735	16	5	NaN	NaN	NaN	3.1059E-17	1	21761	200.76	169.72	1	483850			1108	506	942	956	1108	1108		
ALTHIDHSLSR	11	Unmodified	_ALTHIDHSLSR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.226438	1248.65748	-0.46431	-0.00019372	0.50509	0.00021074	0.040781	1.7015E-05	417.226490102989	3.6431	0.17732	3.6431	3.5898	3.7672	0	819	40	0.773912161060781	0.0266186890168029	0.773912161060781	470.099309310044	0	16.169053739104						383	21	4	NaN	NaN	NaN	0.00013792	1	10885	74.424	41.028	1	164800			1109	1284	943	957	1109	1109		
ALTHIDHSLSR	11	Unmodified	_ALTHIDHSLSR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.336018	1248.65748	2.2649	0.0014163	-0.76274	-0.00047697	1.5022	0.00093936	625.335783190167	3.6431	0.097517	3.6431	3.6164	3.714	0	528	31	0.971237000454584	0.0202090656110732	0.971237000454584	393.310677222192	0	8.18383286242045						168	12	3	NaN	NaN	NaN	0.00012674	1	10886	90.142	70.886	1	40626			1110	1284	943	957	1110	1110		
ALTLDQWLEQHK	12	Unmodified	_ALTLDQWLEQHK_			0	0	0	Q9HBL8	Q9HBL8	Q9HBL8	NMRAL1	NmrA-like family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.596419	1480.76743	-2.0773	-0.0010274	0.85479	0.00042278	-1.2226	-0.00060467	494.59709444119	13.008	0.088667	13.008	12.963	13.052	0	777	40	0.802556497112065	0.026585355643111	0.802556497112065	486.663399691102	0	16.1211324135188						160	11	3	NaN	NaN	NaN	0.0035193	1	17930	43.168	38.018	1	36851			1111	2953	944	958	1111	1111		
ALTLGALTLPLAR	13	Unmodified	_ALTLGALTLPLAR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.413737	1308.81292	0.87252	0.00057186	0.46256	0.00030317	1.3351	0.00087503	655.41394339163	17.885	0.1241	17.885	17.832	17.956	0	441	124	1.02971785871157	0.0825657619703744	1.02971785871157	416.783320751361	0	33.4188944702163						749	15	4	NaN	NaN	NaN	4.2331E-11	1	12628	123.42	96.473	1	249890			1112	2726	945	959	1112	1112		
ALTLLDYLLK	10	Unmodified	_ALTLLDYLLK_			0	0	0	Q9H201	Q9H201	Q9H201	EPN3	Epsin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.857732	1161.70091	-0.9951	-0.00057901	0.12465	7.253E-05	-0.87045	-0.00050648	581.858020403557	19.286	0.044326	19.286	19.277	19.321	0	600	28	0.922661313351899	0.0182449125514795	0.922661313351899	373.94524150653	0	7.39447740096841						80	6	2	NaN	NaN	NaN	0.0062289	1	8398	54.436	0	1	16921			1113	2859	946	960	1113	1113		
ALTLPGSSENEYIMK	15	Unmodified	_ALTLPGSSENEYIMK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.913638	1651.81272	2.6489	0.0021904	0.77078	0.00063737	3.4197	0.0028278	826.91518026225	12.165	0.32814	12.165	12.041	12.369	0	351	79	1.08996939197032	0.0520742301035637	1.08996939197032	440.212149512047	0	21.0315160562774						1600	38	6	NaN	NaN	NaN	2.4241E-07	1	23104	95.656	76.332	1	1186800			1114	1264	947	961	1114	1114		
ALTLPGSSENEYIMK	15	Oxidation (M)	_ALTLPGSSENEYIM(Oxidation (M))K_	ALTLPGSSENEYIM(1)K	ALTLPGSSENEYIM(77)K	0	1	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.911095	1667.80764	2.8846	0.0024084	-0.89273	-0.00074535	1.9918	0.001663	834.910318170708	10.33	0.18619	10.33	10.232	10.418	0	333	43	1.10198982404297	0.0280399540961984	1.10198982404297	445.031409755223	0	11.323752750385						616	22	4	NaN	NaN	NaN	0.00025755	1	23567	77.157	69.6	1	176880			1115	1264	947	962	1115	1115	445	
ALTNLPHTDFTLCK	14	Unmodified	_ALTNLPHTDFTLCK_			0	0	0	Q9UBQ5	Q9UBQ5	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.916515	1629.81848	2.5909	0.0021139	-4.679	-0.0038177	-2.0881	-0.0017037	815.912738929032	10.986	0.11531	10.986	10.933	11.048	0	351	64	1.08996939197032	0.0420570468363235	1.08996939197032	440.261580532663	0	16.9877264894795						251	14	2	NaN	NaN	NaN	8.1067E-06	1	22479	99.589	72.211	1	78593			1116	3184	948	963	1116	1116		
ALTNLPHTDFTLCK	14	Unmodified	_ALTNLPHTDFTLCK_			0	0	0	Q9UBQ5	Q9UBQ5	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.280102	1629.81848	-0.22429	-0.00012208	-1.5379	-0.00083707	-1.7622	-0.00095915	544.279109370059	10.977	0.15074	10.977	10.924	11.075	0	720	82	0.841341816837976	0.0550930195244669	0.841341816837976	509.750837134543	0	33.37967073646						636	18	4	NaN	NaN	NaN	0.0016375	1	22480	58.476	45.302	1	178270			1117	3184	948	963	1117	1117		
ALTPAFLVCVGSSPFCK	17	Unmodified	_ALTPAFLVCVGSSPFCK_			0	0	0	O95801	O95801	O95801	TTC4	Tetratricopeptide repeat protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.468057	1852.92156	1.0699	0.00099234	0.43645	0.0004048	1.5064	0.0013971	927.468384910933	17.628	0.097536	17.628	17.575	17.672	0	234	31	1.16792504164217	0.0199405477396462	1.16792504164217	471.270442943217	0	8.0462276522303						222	12	3	NaN	NaN	NaN	0.0027304	1	28559	58.338	49.963	1	41253			1118	454	949	964	1118	1118		
ALTPQTAETDAIR	13	Unmodified	_ALTPQTAETDAIR_			0	0	0	Q53HC9	Q53HC9	Q53HC9	TSSC1	Protein TSSC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.864805	1385.71506	2.119	0.0014703	-0.59918	-0.00041575	1.5199	0.0010546	693.864536864122	7.3053	0.18621	7.3053	7.2166	7.4028	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	421.424290356727	0	8.94846518382968						256	22	3	NaN	NaN	NaN	0.00014817	1	15013	71.066	62.089	1	60543			1119	1953	950	965	1119	1119		
ALTQTGGPHVK	11	Unmodified	_ALTQTGGPHVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.809105	1107.60366	1.122	0.00062252	-0.56372	-0.00031276	0.55832	0.00030976	554.808836746867	2.5168	0.10642	2.5168	2.4902	2.5966	0	651	19	0.888155670855968	0.0121928248997817	0.888155670855968	360.16665959527	0	4.94445867913231						85	13	2	NaN	NaN	NaN	0.034334	1	6934	43.272	31.205	1	15846			1120	792	951	966	1120	1120		
ALTSEIALLQSR	12	Unmodified	_ALTSEIALLQSR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.374809	1300.73507	1.216	0.00079204	-0.13295	-8.6598E-05	1.083	0.00070545	651.374843587484	13.026	0.11527	13.026	12.972	13.088	0	522	106	0.975277694896658	0.0705901345757332	0.975277694896658	394.774008031565	0	28.5735544858355						990	14	3	NaN	NaN	NaN	1.1398E-07	1	12377	141.29	118.91	1	399940			1121	518	952	967	1121	1121		
ALTSFLPAPTQLSQDQLEAEEK	22	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ALTSFLPAPTQLSQDQLEAEEK_			1	0	0	Q13573	Q13573	Q13573	SNW1	SNW domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.08311	2457.2275	0.49049	0.00040224	0.023419	1.9205E-05	0.51391	0.00042145	820.417374447796	19.747	0.088688	19.747	19.694	19.782	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	602.635982896665	0	10.9680166672917						210	11	4	NaN	NaN	NaN	6.4844E-07	1	36608	96.78	89.031	1	44647			1122	1687	953	968	1122	1122		
ALTSQLTDEELAQGR	15	Unmodified	_ALTSQLTDEELAQGR_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.415391	1630.81623	1.5984	0.001305	-0.078754	-6.4296E-05	1.5197	0.0012407	816.415752006449	9.4164	0.21282	9.4164	9.3278	9.5406	0	381	49	1.06991323971056	0.032111976565327	1.06991323971056	432.158233279499	0	12.9706358838391						384	25	2	NaN	NaN	NaN	5.3904E-24	1	22517	196.38	180.77	1	224800			1123	817	954	969	1123	1123		
ALTVAHELLCNKPEEEK	17	Unmodified	_ALTVAHELLCNKPEEEK_			0	0	1	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.006819	1979.99863	0.79634	0.00052638	1.6578	0.0010958	2.4542	0.0016222	661.342413333644	7.527	0.1064	7.527	7.4915	7.5979	0	594	28	0.926715457081489	0.0182398570098127	0.926715457081489	560.640063010245	0	11.0346649612213						284	13	5	NaN	NaN	NaN	7.0327E-14	1	31288	174.02	165.65	1	106490			1124	1540	955	970	1124	1124		
ALTVPELTQQMFDAK	15	Unmodified	_ALTVPELTQQMFDAK_			0	0	0	P04350;P68371;Q13509	P04350;P68371;Q13509	P68371	TUBB4A;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.627279	1690.86001	-1.1005	-0.00062139	-1.1615	-0.00065584	-2.2621	-0.0012772	564.960740302188	16.51	0.23053	16.51	16.386	16.617	0	711	25	0.847456455381371	0.0163045710776146	0.847456455381371	513.299494136323	0	9.87558479625142						410	27	4	NaN	NaN	NaN	0.0238	1	24233	35.845	31.318	1	82574			1125	1449;512;1675	956	971	1125	1125		
ALTVPELTQQMFDAK	15	Unmodified	_ALTVPELTQQMFDAK_			0	0	0	P04350;P68371;Q13509	P04350;P68371;Q13509	P68371	TUBB4A;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.627279	1690.86001	-0.49781	-0.00028108	-1.5688	-0.00088578	-2.0666	-0.0011669	564.626224151011	16.537	0.24828	16.537	16.377	16.626	0	666	37	0.877991458330206	0.0244025785468278	0.877991458330206	531.794371319104	0	14.7805013291994						497	29	3	NaN	NaN	NaN	0.053884	1	24234	23.931	21.63	1	106770			1126	1449;512;1675	956	971	1126	1126		
ALTVPELTQQMFDAK	15	Unmodified	_ALTVPELTQQMFDAK_			0	0	0	P04350;P68371;Q13509	P04350;P68371;Q13509	P68371	TUBB4A;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.43728	1690.86001	1.9379	0.0016403	1.2153	0.0010287	3.1533	0.002669	846.438915797677	16.493	0.62067	16.493	16.174	16.794	0	312	112	1.11600111266355	0.0739782686267241	1.11600111266355	450.639136654558	0	29.8722848273687						3997	71	6	NaN	NaN	NaN	2.0265E-17	1	24236	179.98	169.01	1	4941800			1127	1449;512;1675	956	971	1127	1127		
ALTVPELTQQMFDAR	15	Unmodified	_ALTVPELTQQMFDAR_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.440354	1718.86616	1.3012	0.0011196	1.0102	0.00086923	2.3115	0.0019889	860.440953908907	16.785	0.31039	16.785	16.644	16.954	0	312	70	1.11600111266355	0.0460181056386699	1.11600111266355	450.579441701797	0	18.5795624319393						909	36	3	NaN	NaN	NaN	8.7104E-05	1	25030	54.309	49.48	1	230890			1128	2745	957	972	1128	1128		
ALTVPELTQQVFDAK	15	Unmodified	_ALTVPELTQQVFDAK_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.969922	1658.88794	-1.1133	-0.00061675	-0.69943	-0.00038746	-1.8128	-0.0010042	554.303738593621	16.298	0.39016	16.298	16.005	16.395	0	714	37	0.845418525735192	0.0244602575158872	0.845418525735192	512.145257897107	0	14.8177553630135						761	45	4	NaN	NaN	NaN	0.0018258	1	23298	62.705	52.455	1	291650			1129	560	958	973	1129	1129		
ALTVPELTQQVFDAK	15	Unmodified	_ALTVPELTQQVFDAK_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.969922	1658.88794	-0.43254	-0.00023961	-1.0209	-0.00056554	-1.4534	-0.00080515	553.969349902423	16.28	0.44335	16.28	15.978	16.422	0	660	49	0.882057989648486	0.0325277459867638	0.882057989648486	534.341044158508	0	19.7049513282188						1177	51	4	NaN	NaN	NaN	0.018424	1	23299	64.266	53.294	1	403140			1130	560	958	973	1130	1130		
ALTVPELTQQVFDAK	15	Unmodified	_ALTVPELTQQVFDAK_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.451245	1658.88794	2.8784	0.0023904	1.074	0.0008919	3.9524	0.0032823	830.452436944042	16.271	0.81579	16.271	15.757	16.573	0	333	157	1.10198982404297	0.104062690841878	1.10198982404297	445.051118902859	0	42.0269007796339						6721	93	6	NaN	NaN	NaN	3.4322E-12	1	23304	169.57	150.01	1	10734000			1131	560	958	973	1131	1131		
ALVADSHPESER	12	Unmodified	_ALVADSHPESER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.820398	1309.62624	1.8629	0.0012217	-1.2021	-0.00078836	0.66082	0.00043338	655.819605453715	2.8981	0.09754	2.8981	2.8804	2.9779	0	534	28	0.967195187796614	0.0181919339867516	0.967195187796614	391.47443228374	0	7.36322628510061						150	12	3	NaN	NaN	NaN	0.001815	1	12634	74.849	67.202	1	29139			1132	1511	959	974	1132	1132		
ALVADSHPESER	12	Unmodified	_ALVADSHPESER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.549357	1309.62624	-1.3867	-0.00060675	2.9981	0.0013118	1.6114	0.00070505	437.550595289572	2.907	0.14187	2.907	2.8804	3.0222	0	756	25	0.816857749704129	0.0163386061083168	0.816857749704129	495.933522289756	0	9.91955145132351						181	17	3	NaN	NaN	NaN	0.0011914	1	12636	46.033	42.688	1	45052			1133	1511	959	974	1133	1133		
ALVATPGK	8	Unmodified	_ALVATPGK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	378.734346	755.454139	0.051619	1.955E-05	0.07451	2.8219E-05	0.12613	4.7769E-05	378.734363564259	3.7672	0.17733	3.7672	3.6962	3.8736	0	849	31	0.753417699604308	0.0205087467208043	0.753417699604308	307.271296358491	0	8.36421708024534						254	21	3	NaN	NaN	NaN	0.040654	1	654	29.102	17.453	1	67797			1134	764	960	975	1134	1134		
ALVAYYQK	8	Unmodified	_ALVAYYQK_			0	0	0	P62249	P62249	P62249	RPS16	40S ribosomal protein S16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.26601	954.517468	0.73757	0.00035275	-0.68772	-0.00032891	0.049846	2.3839E-05	478.265982803778	6.0461	0.27489	6.0461	5.9751	6.25	0	720	49	0.841341816837976	0.0326091497098583	0.841341816837976	341.854243438606	0	13.2497588734338						780	32	4	NaN	NaN	NaN	0.0146	1	3328	51.456	29.528	1	348890			1135	1372	961	976	1135	1135		
ALVDELEWEIAQVDPK	16	Unmodified	_ALVDELEWEIAQVDPK_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.977824	1853.94109	1.5256	0.0014157	0.12507	0.00011607	1.6506	0.0015317	927.978175136049	19.649	0.17735	19.649	19.57	19.747	0	243	79	1.16194328902838	0.05189537397897	1.16194328902838	468.854825967192	0	20.9402616850245						1012	21	5	NaN	NaN	NaN	6.2743E-07	1	28576	104.49	77.113	1	383920			1136	3341	962	977	1136	1136		
ALVDGPCTQVR	11	Unmodified	_ALVDGPCTQVR_			0	0	0	P50914	P50914	P50914	RPL14	60S ribosomal protein L14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.311155	1214.60776	2.1058	0.001281	-0.0093294	-5.6752E-06	2.0965	0.0012753	608.311586215055	6.1259	0.47006	6.1259	5.9041	6.3742	0	591	94	0.928742107665821	0.0627914350498548	0.928742107665821	376.217290156824	0	25.4357192858265						2102	54	6	NaN	NaN	NaN	0.00013899	1	9858	107.08	69.487	1	1966100			1137	1173	963	978	1137	1137		
ALVDHENVISCPHLGASTK	19	Unmodified	_ALVDHENVISCPHLGASTK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.51511	2047.01567	2.4921	0.0025532	-0.7831	-0.00080229	1.709	0.0017509	1025.01545055551	7.6334	0.088653	7.6334	7.5979	7.6865	0	177	49	1.2057522832638	0.0318217315415521	1.2057522832638	486.191202612583	0	12.8313635745503						373	11	4	NaN	NaN	NaN	0.0024497	1	32483	31.905	28.82	1	84106			1138	189	964	979	1138	1138		
ALVDHENVISCPHLGASTK	19	Unmodified	_ALVDHENVISCPHLGASTK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.345834	2047.01567	1.886	0.0012888	0.20771	0.00014194	2.0937	0.0014307	683.680465889264	7.6334	0.17743	7.6334	7.5801	7.7576	0	567	79	0.944945209309785	0.0526820081631472	0.944945209309785	571.538443785784	0	31.8640622381357						746	21	6	NaN	NaN	NaN	3.5627E-15	1	32484	170.92	159.24	1	389480			1139	189	964	979	1139	1139		
ALVDHENVISCPHLGASTK	19	Unmodified	_ALVDHENVISCPHLGASTK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	512.761195	2047.01567	1.0384	0.00053243	1.3201	0.00067687	2.3584	0.0012093	513.012514638543	7.6334	0.23062	7.6334	7.5536	7.7842	0	672	37	0.873923798053065	0.024412742353751	0.873923798053065	704.773688438261	0	19.6875957742271						735	27	6	NaN	NaN	NaN	0.062881	1	32485	30.172	9.8827	1	462710			1140	189	964	979	1140	1140		
ALVDILSEVSK	11	Unmodified	_ALVDILSEVSK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.339904	1172.66525	0.81904	0.00048106	-1.8477	-0.0010852	-1.0287	-0.00060418	587.339046256209	16.076	0.18623	16.076	16.014	16.2	0	588	49	0.93076847747433	0.0324241729460041	0.93076847747433	377.189615373566	0	13.1397459392865						604	22	4	NaN	NaN	NaN	7.5777E-05	1	8683	121.8	96.543	1	451680			1141	2698	965	980	1141	1141		
ALVDYTSDSAEK	12	Unmodified	_ALVDYTSDSAEK_			0	0	0	Q9UBK8	Q9UBK8	Q9UBK8	MTRR	Methionine synthase reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.809165	1297.60378	2.126	0.0013815	8.9823	0.0058368	11.108	0.0072183	650.821670356229	6.0815	0.23056	6.0815	5.9751	6.2057	0	543	49	0.961130371139249	0.0323434604594182	0.961130371139249	389.057266875187	0	13.0923532389382						500	27	4	NaN	NaN	NaN	0.045914	1	12283	25.613	22.511	1	99137			1142	3176	966	981	1142	1142		
ALVEFTNSPDCLSK	14	Unmodified	_ALVEFTNSPDCLSK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.884881	1579.75521	2.4443	0.0019331	-1.3468	-0.0010651	1.0975	0.00086799	790.883579945998	10.844	0.23941	10.844	10.72	10.959	0	369	85	1.07793901817685	0.0562270009360815	1.07793901817685	435.518519609836	0	22.7173335382183						679	28	4	NaN	NaN	NaN	9.1713E-08	1	20959	108.2	87.107	1	171830			1143	3235	967	982	1143	1143		
ALVENCLVPDLWIR	14	Unmodified	_ALVENCLVPDLWIR_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.455807	1696.89706	1.0129	0.00086043	-1.3171	-0.0011188	-0.30419	-0.0002584	849.454555462831	18.151	0.088682	18.151	18.124	18.213	0	330	46	1.10399226369747	0.0300324663961253	1.10399226369747	445.777101749477	0	12.1267025763526						280	11	4	NaN	NaN	NaN	3.2461E-05	1	24414	88.734	85.229	1	62213			1144	1793	968	983	1144	1144		
ALVFQPVAELK	11	Unmodified	_ALVFQPVAELK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.860806	1213.70706	1.2458	0.00075726	-1.5673	-0.00095271	-0.32153	-0.00019545	607.859688196392	13.496	0.16847	13.496	13.442	13.611	0	510	73	0.983355730988811	0.0484481440475263	0.983355730988811	398.343648162476	0	19.6256652993588						544	20	4	NaN	NaN	NaN	0.0023358	1	9843	51.872	37.337	1	221640			1145	578	969	984	1145	1145		
ALVHERDEAAYGELR	15	Unmodified	_ALVHERDEAAYGELR_			0	0	1	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.960309	1727.8591	0.10327	5.9584E-05	3.0023	0.0017322	3.1056	0.0017918	576.96300910734	5.2479	0.1419	5.2479	5.2036	5.3455	0	669	52	0.875957769340875	0.034596730190302	0.875957769340875	530.470295209398	0	20.9513955120678						322	17	4	NaN	NaN	NaN	0.0010436	1	25264	76.563	60.276	1	106570			1146	3274	970	985	1146	1146		
ALVLANPEVSLWR	13	Unmodified	_ALVLANPEVSLWR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.419551	1466.82455	0.23134	0.0001699	-0.87772	-0.00064462	-0.64638	-0.00047472	734.419592180122	15.899	0.079832	15.899	15.872	15.952	0	444	28	1.02770517576159	0.0181141482765854	1.02770517576159	415.5002721366	0	7.32353374873918						162	10	3	NaN	NaN	NaN	0.004384	1	17491	48.785	43.635	1	52558			1147	3048	971	986	1147	1147		
ALVLDCHYPEDEVGQEDEAESDIFSIR	27	Unmodified	_ALVLDCHYPEDEVGQEDEAESDIFSIR_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1046.13991	3135.39789	2.4619	0.0025755	-0.47499	-0.00049691	1.9869	0.0020786	1046.47386363697	15.792	0.46996	15.792	15.597	16.067	0	339	112	1.09798411722691	0.0742334529838058	1.09798411722691	662.54798847507	0	44.7941133030204						3046	54	7	NaN	NaN	NaN	2.7071E-35	1	38399	164.43	158.87	1	885550			1148	1566	972	987	1148	1148		
ALVQNDTLLQVK	12	Unmodified	_ALVQNDTLLQVK_			0	0	0	Q92522	Q92522	Q92522	H1FX	Histone H1x	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.390459	1340.76637	1.8453	0.0012389	0.2996	0.00020115	2.1449	0.0014401	671.390616303871	10.746	0.15073	10.746	10.702	10.853	0	444	52	1.02770517576159	0.0342250726954365	1.02770517576159	415.865108236617	0	13.8493158316014						416	18	3	NaN	NaN	NaN	0.00028168	1	13640	78.932	59.676	1	169420			1149	2406	973	988	1149	1149		
ALVTGYFMQVAHLER	15	Unmodified	_ALVTGYFMQVAHLER_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.953432	1733.89231	1.4955	0.001298	-1.783	-0.0015476	-0.28752	-0.00024955	867.951905761098	15.101	0.11527	15.101	15.056	15.171	0	171	19	1.20972836110953	0.0119249608377685	1.20972836110953	488.387463301543	0	4.81430506282112						192	14	5	NaN	NaN	NaN	0.0053513	1	25446	67.887	51.235	1	63935			1150	181	974	989	1150	1150		
ALWCSEDK	8	Unmodified	_ALWCSEDK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.726392	1007.43823	-0.19219	-9.7006E-05	1.7922	0.00090458	1.6	0.00080758	504.727174333481	5.7978	0.2128	5.7978	5.7268	5.9396	0	732	43	0.833184998970724	0.0285568061062612	0.833184998970724	338.287363744465	0	11.5945518301253						450	25	3	NaN	NaN	NaN	0.015283	1	4448	47.349	33.701	1	112380			1151	3394	975	990	1151	1151		
ALWEETSFQLDR	12	Unmodified	_ALWEETSFQLDR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.864805	1493.71506	0.95349	0.00071308	1.3889	0.0010387	2.3424	0.0017518	747.865656764757	14.028	0.16847	14.028	13.983	14.152	0	429	28	1.03776581230406	0.0181016489291916	1.03776581230406	419.49717986809	0	7.31724883083086						201	20	2	NaN	NaN	NaN	0.0076004	1	18347	55.754	48.614	1	52456			1152	141	976	991	1152	1152		
ALYDTFSAFGNILSCK	16	Unmodified	_ALYDTFSAFGNILSCK_			0	0	0	P11940;Q13310	P11940;Q13310	P11940	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.96255	1805.86582	-0.26102	-0.00015739	-0.14405	-8.6858E-05	-0.40507	-0.00024424	603.296461424851	18.949	0.070927	18.949	18.922	18.993	0	591	25	0.928742107665821	0.0162143291787672	0.928742107665821	562.242737357209	0	9.81584526709241						167	9	4	NaN	NaN	NaN	0.024515	1	27369	26.517	24.127	1	48244			1153	661;1653	977	992	1153	1153		
ALYDTFSAFGNILSCK	16	Unmodified	_ALYDTFSAFGNILSCK_			0	0	0	P11940;Q13310	P11940;Q13310	P11940	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.940187	1805.86582	1.6976	0.0015345	0.06181	5.5872E-05	1.7594	0.0015904	903.940650883835	18.949	0.20393	18.949	18.878	19.082	0	282	61	1.13599383354359	0.0399689530119671	1.13599383354359	458.474596845351	0	16.1310291283277						1008	24	6	NaN	NaN	NaN	1.6777E-24	1	27370	200.82	162.72	1	819170			1154	661;1653	977	992	1154	1154		
ALYDYAGQEADELSFR	16	Unmodified	_ALYDYAGQEADELSFR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.425955	1846.83736	2.3276	0.0021517	4.7694	0.0044089	7.0969	0.0065606	924.430598928328	13.93	0.23053	13.93	13.859	14.09	0	264	61	1.14797626962532	0.0399359777538084	1.14797626962532	463.232220901476	0	16.1149948463714						785	27	4	NaN	NaN	NaN	3.3647E-06	1	28402	100.69	69.818	1	227810			1155	3268	978	993	1155	1155		
ALYDYEGQEHDELSFK	16	Unmodified	_ALYDYEGQEHDELSFK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.626772	1942.85849	0.62393	0.0004047	0.45481	0.000295	1.0787	0.0006997	648.961406248446	10.48	0.088716	10.48	10.454	10.543	0	672	82	0.873923798053065	0.054894411457312	0.873923798053065	528.772690990266	0	33.2141838124509						416	11	3	NaN	NaN	NaN	0.00012157	1	30568	66.619	58.245	1	100650			1156	3294	979	994	1156	1156		
ALYEAGER	8	Unmodified	_ALYEAGER_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.727249	907.439946	0.23137	0.00010521	2.7115	0.001233	2.9429	0.0013382	454.728770052908	3.6164	0.44332	3.6164	3.5278	3.9711	0	765	52	0.810730346695089	0.0347316235203058	0.810730346695089	329.658669086086	0	14.1225511436408						798	51	4	NaN	NaN	NaN	0.016056	1	2455	65.313	45.825	1	619170			1157	506	980	995	1157	1157		
ALYEHLTAK	9	Unmodified	_ALYEHLTAK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.287474	1044.5604	1.5234	0.0007972	-1.6345	-0.00085532	-0.11108	-5.8129E-05	523.286269472822	4.8223	0.17735	4.8223	4.7514	4.9287	0	663	46	0.880024865079826	0.0305095775467987	0.880024865079826	357.134020431147	0	12.3814775278602						288	21	2	NaN	NaN	NaN	0.0014724	1	5346	86.205	62.63	1	280770			1158	1055	981	996	1158	1158		
ALYEQNQSDVNEAK	14	Unmodified	_ALYEQNQSDVNEAK_			0	0	0	Q14691	Q14691	Q14691	GINS1	DNA replication complex GINS protein PSF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.878641	1607.74273	3.2417	0.0026092	-1.6262	-0.0013089	1.6155	0.0013003	804.877028652685	4.4943	0.097547	4.4943	4.4588	4.5563	0	399	31	1.0578662689527	0.020089366798685	1.0578662689527	427.343887773672	0	8.11545689906603						201	12	4	NaN	NaN	NaN	1.7471E-11	1	21842	133.07	115.34	1	47966			1159	1767	982	997	1159	1159		
ALYESELADAR	11	Unmodified	_ALYESELADAR_			0	0	0	Q03252	Q03252	Q03252	LMNB2	Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.306592	1236.59863	1.9043	0.0011793	0.97785	0.00060559	2.8821	0.0017849	619.307309943165	7.997	0.15971	7.997	7.9438	8.1036	0	528	37	0.971237000454584	0.0242441707123356	0.971237000454584	393.352612245274	0	9.81892975345261						405	19	4	NaN	NaN	NaN	0.0074574	1	10515	53.517	41.45	1	117750			1160	1537	983	998	1160	1160		
ALYYLQIHPQELR	13	Unmodified	_ALYYLQIHPQELR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.634985	1642.88313	-0.0020761	-1.139E-06	1.0141	0.00055639	1.0121	0.00055525	548.635340227248	12.041	0.2217	12.041	11.926	12.148	0	612	43	0.914549654013882	0.0283986853568062	0.914549654013882	554.068778696758	0	17.2049979388001						610	26	4	NaN	NaN	NaN	0.0023362	1	22843	66.664	64.363	1	225790			1161	1884	984	999	1161	1161		
ALYYLQIHPQELR	13	Unmodified	_ALYYLQIHPQELR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.44884	1642.88313	1.5029	0.0012361	0.8096	0.00066586	2.3125	0.0019019	822.449571119203	12.041	0.17736	12.041	11.97	12.148	0	261	43	1.14997238118939	0.0279474898102239	1.14997238118939	464.466896107585	0	11.2878222629377						556	21	5	NaN	NaN	NaN	1.0021E-07	1	22844	108.2	99.389	1	213460			1162	1884	984	999	1162	1162		
AMAAEAEASR	10	Unmodified	_AMAAEAEASR_			0	0	0	P27105	P27105	P27105	STOM	Erythrocyte band 7 integral membrane protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.734748	1005.45494	0.21082	0.0001062	1.3469	0.00067847	1.5577	0.00078467	503.735693332049	2.5256	0.12418	2.5256	2.5079	2.6321	0	729	25	0.835224628594324	0.0163181723166257	0.835224628594324	339.12450304563	0	6.62563325844707						162	15	3	NaN	NaN	NaN	0.0067053	1	4396	30.918	20.83	1	37061			1163	861	985	1000	1163	1163		
AMADALLER	9	Unmodified	_AMADALLER_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.257859	988.501166	0.11222	5.5577E-05	-1.0233	-0.00050679	-0.91106	-0.00045121	495.257730098038	8.9908	0.26604	8.9908	8.9375	9.2036	0	696	40	0.857641857947968	0.0264710186728029	0.857641857947968	348.307148718151	0	10.7504606405863						386	31	4	NaN	NaN	NaN	0.011181	1	4018	36.211	25.383	1	183510			1164	954	986	1001	1164	1164		
AMADPEVQQIMSDPAMR	17	Unmodified	_AMADPEVQQIMSDPAMR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.431346	1888.84814	2.2673	0.0021435	0.087907	8.311E-05	2.3552	0.0022266	945.432208201661	13.061	0.32811	13.061	12.955	13.283	0	252	73	1.15595906938629	0.0479034164736727	1.15595906938629	466.376114608532	0	19.3268168771122						2240	38	7	NaN	NaN	NaN	4.7759E-19	1	29338	186.39	176.36	1	1517400			1165	934	987	1002	1165	1165		
AMADPEVQQIMSDPAMR	17	Oxidation (M)	_AM(Oxidation (M))ADPEVQQIMSDPAMR_	AM(1)ADPEVQQIMSDPAMR	AM(89)ADPEVQQIM(-89)SDPAM(-120)R	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.428803	1904.84305	2.0721	0.0019756	-2.3102	-0.0022026	-0.2381	-0.00022701	953.426828435338	11.66	0.24834	11.66	11.518	11.766	0	270	85	1.14398322290989	0.0559257763543057	1.14398322290989	461.516161018738	0	22.5620875272789						1639	29	6	NaN	NaN	NaN	1.9401E-06	1	29697	117.77	115.53	3	497320			1166	934	987	1003	1166	1166	328;329;330	
AMADPEVQQIMSDPAMR	17	Oxidation (M)	_AMADPEVQQIM(Oxidation (M))SDPAMR_	AMADPEVQQIM(0.999)SDPAM(0.001)R	AM(-99)ADPEVQQIM(29)SDPAM(-29)R	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.428803	1904.84305	1.7555	0.0016737	0.033334	3.1781E-05	1.7888	0.0017055	953.930344614756	9.4962	0.12412	9.4962	9.4342	9.5583	0	228	34	1.17191150690002	0.0219240556368867	1.17191150690002	472.783236424328	0	8.84480263102193						360	15	4	NaN	NaN	NaN	4.7603E-10	1	29698	107.6	105.62	3	78337			1167	934	987	1003	1167	1167	328;329;330	
AMADPEVQQIMSDPAMR	17	Oxidation (M)	_AMADPEVQQIMSDPAM(Oxidation (M))R_	AMADPEVQQIM(0.002)SDPAM(0.998)R	AM(-100)ADPEVQQIM(-26)SDPAM(26)R	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.428803	1904.84305	2.3903	0.0022789	0.49727	0.00047411	2.8875	0.0027531	953.42947753873	11.456	0.20395	11.456	11.367	11.571	0	246	67	1.1599488233373	0.0439114603269588	1.1599488233373	467.957139863615	0	17.7151620557858						1255	24	5	NaN	NaN	NaN	3.7177E-07	1	29699	99.668	96.774	3	332450			1168	934	987	1003	1168	1168	328;329;330	
AMADPEVQQIMSDPAMR	17	2 Oxidation (M)	_AM(Oxidation (M))ADPEVQQIMSDPAM(Oxidation (M))R_	AM(1)ADPEVQQIM(0.018)SDPAM(0.982)R	AM(49)ADPEVQQIM(-17)SDPAM(17)R	0	2	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.426261	1920.83797	2.1599	0.0020766	-0.16955	-0.00016301	1.9904	0.0019136	961.92754615192	9.9307	0.12412	9.9307	9.8864	10.01	0	285	43	1.13399579921816	0.0279667154484231	1.13399579921816	457.459386871823	0	11.2819081963752						322	15	3	NaN	NaN	NaN	0.0020136	1	30073	51.829	51.09	3	60130			1169	934	987	1004	1169	1169	328;329;330	
AMDLVQEEFLQR	12	Unmodified	_AMDLVQEEFLQR_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.869034	1477.72351	1.3971	0.0010336	1.5497	0.0011466	2.9468	0.0021802	740.370199490235	13.691	0.37237	13.691	13.496	13.868	0	429	64	1.03776581230406	0.042219714327189	1.03776581230406	419.538850491467	0	17.0682153978274						1055	43	7	NaN	NaN	NaN	4.8411E-05	1	17817	101.48	81.299	1	325910			1170	2949	988	1005	1170	1170		
AMDLVQEEFLQR	12	Oxidation (M)	_AM(Oxidation (M))DLVQEEFLQR_	AM(1)DLVQEEFLQR	AM(70)DLVQEEFLQR	0	1	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.866491	1493.71843	0.86036	0.00064344	5.1045	0.0038175	5.9649	0.0044609	747.87146141479	11.633	0.30156	11.633	11.553	11.855	0	429	22	1.03776581230406	0.014077116606523	1.03776581230406	419.497156850004	0	5.69040753035733						253	35	4	NaN	NaN	NaN	0.011992	1	18349	70.389	47.336	1	54733			1171	2949	988	1006	1171	1171	626	
AMDPAVPNMMIDAAK	15	Unmodified	_AMDPAVPNMMIDAAK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.872404	1573.73026	2.7708	0.002183	1.0398	0.00081924	3.8106	0.0030023	787.873819493417	12.848	0.14188	12.848	12.777	12.919	0	393	82	1.0618830335572	0.0541628493019599	1.0618830335572	429.045701916856	0	21.8840841808445						644	17	3	NaN	NaN	NaN	0.0041908	1	20779	36.46	34.323	1	150610			1172	270	989	1007	1172	1172		
AMDQVNALCEQLVK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AMDQVNALCEQLVK_			1	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.90529	1659.79603	1.3105	0.0010889	0.39948	0.00033193	1.71	0.0014209	830.906092842367	17.255	0.10643	17.255	17.211	17.317	0	300	43	1.12400150285141	0.0279898124125677	1.12400150285141	453.938730984282	0	11.3039527926047						407	13	4	NaN	NaN	NaN	0.00010514	1	23327	77.157	69.951	1	112580			1173	2947	990	1008	1173	1173		
AMDVYQK	7	Unmodified	_AMDVYQK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.707471	853.400389	-0.36764	-0.00015724	1.8575	0.00079448	1.4899	0.00063724	427.708260956723	3.3769	0.32817	3.3769	3.2883	3.6164	0	807	31	0.782101955086014	0.0204687855658668	0.782101955086014	318.317841278399	0	8.33085711210197						484	38	3	NaN	NaN	NaN	0.026348	1	1611	58.687	45.039	1	144520			1174	934	991	1009	1174	1174		
AMEALATAEQACK	13	Unmodified	_AMEALATAEQACK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.326144	1392.63774	1.5779	0.0011003	0.99091	0.00069099	2.5688	0.0017913	697.326802774858	7.0481	0.088717	7.0481	7.0126	7.1014	0	399	67	1.0578662689527	0.0442271274144359	1.0578662689527	427.907202135995	0	17.8898854286749						275	11	3	NaN	NaN	NaN	3.7106E-05	1	15225	108.4	98.887	1	60987			1175	3158	992	1010	1175	1175		
AMEAVAAQGK	10	Unmodified	_AMEAVAAQGK_			0	0	0	P18669;P15259	P18669	P18669	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.250034	974.485516	1.2716	0.00062084	-0.52674	-0.00025718	0.74482	0.00036366	488.249830917306	2.8094	0.28375	2.8094	2.774	3.0577	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	350.856908567677	0	6.61467600660262						316	33	3	NaN	NaN	NaN	0.027153	1	3726	43.734	36.972	1	62306			1176	757	993	1011	1176	1176		
AMESTATAAVAAELVSADK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AMESTATAAVAAELVSADK_			1	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.461681	1876.90881	0.2055	0.00019306	0.85992	0.00080786	1.0654	0.0010009	939.462567778231	18.612	0.21279	18.612	18.568	18.781	0	69	52	1.27715511956461	0.0336464433954791	1.27715511956461	515.297021800466	0	13.5754160244676						768	25	5	NaN	NaN	NaN	1.2117E-14	1	29079	126.63	117.05	1	211630			1177	1126	994	1012	1177	1177		
AMESTATAAVAAELVSADK	19	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))AM(Oxidation (M))ESTATAAVAAELVSADK_	AM(1)ESTATAAVAAELVSADK	AM(65)ESTATAAVAAELVSADK	1	1	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.459138	1892.90372	-0.010539	-9.9851E-06	0.13128	0.00012438	0.12074	0.0001144	947.459673944555	16.431	0.11526	16.431	16.395	16.51	0	69	46	1.27715511956461	0.0296839714567931	1.27715511956461	515.26507520881	0	11.9759248903099						409	14	4	NaN	NaN	NaN	0.00064146	1	29439	65.12	61.384	1	88986			1178	1126	994	1013	1178	1178	398	
AMEVDERPTEQYSDIGGLDK	20	Unmodified	_AMEVDERPTEQYSDIGGLDK_			0	0	1	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	751.68284	2252.02669	0.33972	0.00025536	0.058953	4.4314E-05	0.39867	0.00029968	752.017233053017	9.4342	0.19507	9.4342	9.3544	9.5494	0	615	49	0.912521036363781	0.0324601421719642	0.912521036363781	551.588772912447	0	19.6210818991569						524	23	3	NaN	NaN	NaN	5.3817E-29	1	35203	215.11	190.19	1	401420			1179	746	995	1014	1179	1179		
AMEVDIEERPK	11	Unmodified	_AMEVDIEERPK_			0	0	1	Q9Y3C1	Q9Y3C1	Q9Y3C1	NOP16	Nucleolar protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.555344	1315.6442	-2.198	-0.00096612	0.14197	6.2404E-05	-2.056	-0.00090372	439.555534037941	5.8155	0.11525	5.8155	5.7711	5.8864	0	828	22	0.767766820543916	0.0143411262073633	0.767766820543916	466.107054987965	0	8.70641960926264						140	14	3	NaN	NaN	NaN	0.0071865	1	12831	43.272	36.122	1	30743			1180	3383	996	1015	1180	1180		
AMEVDIEERPK	11	Unmodified	_AMEVDIEERPK_			0	0	1	Q9Y3C1	Q9Y3C1	Q9Y3C1	NOP16	Nucleolar protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.829377	1315.6442	1.6622	0.0010951	0.72788	0.00047955	2.39	0.0015746	658.83029702534	5.8243	0.2306	5.8243	5.7623	5.9929	0	486	40	0.999498404980629	0.0262227841979634	0.999498404980629	404.529905703072	0	10.6132239591515						479	27	4	NaN	NaN	NaN	0.010135	1	12834	90.263	76.268	1	170850			1181	3383	996	1015	1181	1181		
AMFGVYDNIGILGNFEK	17	Unmodified	_AMFGVYDNIGILGNFEK_			0	0	0	Q4U2R6	Q4U2R6	Q4U2R6	MRPL51	39S ribosomal protein L51, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.469112	1886.92367	1.0658	0.0010066	1.8457	0.0017432	2.9116	0.0027499	944.973026503101	18.692	0.133	18.692	18.648	18.781	0	240	28	1.16393748060522	0.0179501929154187	1.16393748060522	469.598521383509	0	7.24212785659779						225	16	4	NaN	NaN	NaN	0.019082	1	29305	28.277	24.427	1	33129			1182	1943	997	1016	1182	1182		
AMFLQPDLDSLVDFSTNNQK	20	Unmodified	_AMFLQPDLDSLVDFSTNNQK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1142.05173	2282.0889	-0.79138	-0.00090379	0.34471	0.00039367	-0.44667	-0.00051012	1142.55215689406	19.162	0.04433	19.162	19.144	19.188	0	63	28	1.28111162701928	0.0178055038448577	1.28111162701928	516.219434175191	0	7.17466528766289						99	6	3	NaN	NaN	NaN	0.00065361	1	35482	46.206	35.721	1	16403			1183	2698	998	1017	1183	1183		
AMFLQPDLDSLVDFSTNNQK	20	Unmodified	_AMFLQPDLDSLVDFSTNNQK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.703576	2282.0889	0.028665	2.1835E-05	2.4008	0.0018287	2.4294	0.0018505	762.039246700084	19.162	0.070919	19.162	19.135	19.206	0	447	22	1.02569221487577	0.0140926729608644	1.02569221487577	619.94695443389	0	8.51786681736564						136	9	3	NaN	NaN	NaN	8.713E-05	1	35483	76.196	74.608	1	31517			1184	2698	998	1017	1184	1184		
AMGIMNSFVNDIFER	15	Unmodified	_AMGIMNSFVNDIFER_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.413282	1742.81201	1.9261	0.0016804	-1.4194	-0.0012383	0.50671	0.00044206	873.409824676755	18.373	0.1241	18.373	18.302	18.426	0	336	25	1.09998710857178	0.0160250356219411	1.09998710857178	444.065065604251	0	6.46931081220339						230	15	5	NaN	NaN	NaN	3.1592E-06	1	25672	104.04	98.176	1	40247			1185	283;550	999	1018	1185	1185		
AMGIMNSFVNDIFER	15	Unmodified	_AMGIMNSFVNDIFER_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.413282	1742.81201	1.0014	0.00087362	-0.458	-0.00039956	0.54338	0.00047405	872.413495111816	18.905	0.079767	18.905	18.86	18.94	0	318	34	1.11199926528787	0.0220116788084446	1.11199926528787	448.914372807789	0	8.88612006787736						84	10	2	NaN	NaN	NaN	0.0032901	1	25673	51.569	46.418	1	17746			1186	283;550	999	1018	1186	1186		
AMGIMNSFVNDIFER	15	Unmodified	_AMGIMNSFVNDIFER_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.413282	1742.81201	2.4081	0.0021009	1.2195	0.0010639	3.6276	0.0031648	872.414463234305	19.366	0.50544	19.366	19.277	19.782	0	318	184	1.11199926528787	0.122183011033235	1.11199926528787	448.914366857989	0	49.3253105024202						3634	58	7	NaN	NaN	NaN	2.8117E-24	1	25675	199.51	186.33	1	10176000			1187	283;550	999	1018	1187	1187		
AMGIMNSFVNDIFER	15	Oxidation (M)	_AMGIM(Oxidation (M))NSFVNDIFER_	AMGIM(1)NSFVNDIFER	AM(-47)GIM(47)NSFVNDIFER	0	1	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.41074	1758.80693	1.8261	0.0016077	1.0761	0.00094738	2.9021	0.0025551	880.412243601473	16.918	0.50545	16.918	16.777	17.282	0	303	73	1.12200181823275	0.0480023729585286	1.12200181823275	452.919891591736	0	19.377178542159						2743	58	7	NaN	NaN	NaN	1.751E-32	1	26105	248.91	227.76	2	3523600			1188	283;550	999	1019	1188	1188	50;51	
AMGIMNSFVNDIFER	15	Oxidation (M)	_AM(Oxidation (M))GIMNSFVNDIFER_	AM(1)GIMNSFVNDIFER	AM(70)GIM(-70)NSFVNDIFER	0	1	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.41074	1758.80693	2.7708	0.0024394	0.87308	0.00076867	3.6439	0.0032081	880.412057940612	18.417	0.34585	18.417	18.293	18.639	0	309	124	1.11800162319566	0.0820662777784023	1.11800162319566	451.305128524249	0	33.127798092478						2733	40	7	NaN	NaN	NaN	3.0588E-43	1	26106	260.83	247.03	2	5888800			1189	283;550	999	1019	1189	1189	50;51	
AMGIMNSFVNDIFER	15	2 Oxidation (M)	_AM(Oxidation (M))GIM(Oxidation (M))NSFVNDIFER_	AM(1)GIM(1)NSFVNDIFER	AM(190)GIM(190)NSFVNDIFER	0	2	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.408197	1774.80184	2.7125	0.0024098	0.28475	0.00025297	2.9972	0.0026628	888.409305015776	15.588	0.46113	15.588	15.473	15.934	0	312	82	1.11600111266355	0.0539989629372133	1.11600111266355	450.465826949195	0	21.7962932275715						2372	53	5	NaN	NaN	NaN	9.0076E-24	1	26529	193.34	183.59	1	3060500			1190	283;550	999	1020	1190	1190	50;51	
AMGPLVLTEVLFNEK	15	Unmodified	_AMGPLVLTEVLFNEK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.952566	1659.89058	2.0882	0.0017352	-2.0341	-0.0016902	0.054147	4.4994E-05	831.452287686236	19.942	0.17737	19.942	19.871	20.049	0	330	64	1.10399226369747	0.0420396739560167	1.10399226369747	445.857607577734	0	16.9781157619724						501	21	5	NaN	NaN	NaN	0.0017693	1	23349	54.199	47.452	1	157020			1191	1261	1000	1021	1191	1191		
AMGPLVLTEVLFNEK	15	Oxidation (M)	_AM(Oxidation (M))GPLVLTEVLFNEK_	AM(1)GPLVLTEVLFNEK	AM(70)GPLVLTEVLFNEK	0	1	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.950024	1675.88549	1.2424	0.0010423	-0.95892	-0.00080449	0.28343	0.00023778	838.949410120836	18.745	0.19508	18.745	18.648	18.843	0	315	31	1.11400032671325	0.020009239153943	1.11400032671325	449.86390517163	0	8.08027991505509						224	23	3	NaN	NaN	NaN	0.00085518	1	23793	70.195	64.167	1	43182			1192	1261	1000	1022	1192	1192	444	
AMGTLGVSLSSCSVPGSK	18	Unmodified	_AMGTLGVSLSSCSVPGSK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.429129	1736.84371	2.2805	0.0019827	-5.4146	-0.0047076	-3.1342	-0.0027249	869.423667699305	11.323	0.15079	11.323	11.243	11.394	0	315	31	1.11400032671325	0.020009239153943	1.11400032671325	449.734414742951	0	8.07795405850607						227	18	3	NaN	NaN	NaN	0.0020412	1	25514	65.173	58.426	1	46019			1193	1932	1001	1023	1193	1193		
AMGYQPLVTMDDAMER	16	Unmodified	_AMGYQPLVTMDDAMER_			0	0	0	Q15738	Q15738	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.40734	1826.80013	1.847	0.0016889	1.0914	0.00099795	2.9384	0.0026869	914.409166785388	13.957	0.12414	13.957	13.912	14.036	0	294	40	1.12800004657306	0.0259815997142345	1.12800004657306	455.20862912325	0	10.4849715425784						325	15	4	NaN	NaN	NaN	6.1746E-05	1	27888	55.604	48.464	1	61961			1194	1865	1002	1024	1194	1194		
AMHQAQTMEGCSSPMVVK	18	Unmodified	_AMHQAQTMEGCSSPMVVK_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.44393	1990.87331	2.6382	0.0026289	-1.5561	-0.0015506	1.0821	0.0010783	996.441421280614	5.7002	0.035492	5.7002	5.6913	5.7268	0	180	25	1.203763835057	0.0159108621736821	1.203763835057	485.481613825382	0	6.41689907976559						71	5	2	NaN	NaN	NaN	4.6193E-06	1	31465	47.844	46.134	1	15304			1195	2437	1003	1025	1195	1195		
AMHQAQTMEGCSSPMVVK	18	Unmodified	_AMHQAQTMEGCSSPMVVK_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.631712	1990.87331	1.1583	0.00076987	0.51532	0.0003425	1.6737	0.0011124	664.96684509728	5.7002	0.062063	5.7002	5.6736	5.7357	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	539.750285612014	0	13.5199991723305						204	8	4	NaN	NaN	NaN	6.0566E-05	1	31466	84.102	82.118	1	41493			1196	2437	1003	1025	1196	1196		
AMHQAQTMEGCSSPMVVK	18	Unmodified	_AMHQAQTMEGCSSPMVVK_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.44393	1990.87331	2.5522	0.0025431	0.80001	0.00079717	3.3522	0.0033403	996.444192189142	5.7002	0.044355	5.7002	5.6825	5.7268	0	243	10	1.16194328902838	0.00598175261379263	1.16194328902838	468.615252835191	0	2.41245897280754						31	6	3	NaN	NaN	NaN	0.0015539	1	31467	29.115	24.021	1	3571.5			1197	2437	1003	1025	1197	1197		
AMINLHIQK	9	Unmodified	_AMINLHIQK_			0	0	0	Q9NZ45	Q9NZ45	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	356.539188	1066.59573	-1.3326	-0.00047512	-0.13277	-4.7337E-05	-1.4654	-0.00052246	356.539212083065	7.4205	0.062047	7.4205	7.394	7.456	0	894	16	0.722622390967862	0.0102751283393935	0.722622390967862	439.761251963583	0	6.25306295389777						66	8	2	NaN	NaN	NaN	0.057996	1	5882	13.648	9.8321	1	14394			1198	3127	1004	1026	1198	1198		
AMINLHIQK	9	Unmodified	_AMINLHIQK_			0	0	0	Q9NZ45	Q9NZ45	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.305144	1066.59573	1.1732	0.00062686	0.29761	0.00015902	1.4708	0.00078588	534.305685133814	7.4294	0.1508	7.4294	7.3762	7.527	8.8818E-16	618	31	0.910492137470517	0.0202875850561227	0.910492137470517	369.398993835207	0	8.23094807594708						358	18	4	NaN	NaN	NaN	0.0011398	1	5883	105.04	89.458	1	160850			1199	3127	1004	1026	1199	1199		
AMLAQQYQEGTLSVEK	16	Unmodified	_AMLAQQYQEGTLSVEK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.448376	1794.8822	2.2142	0.0019893	-0.57537	-0.00051694	1.6388	0.0014724	898.44771303025	9.6204	0.079777	9.6204	9.5849	9.6647	0	267	31	1.14597988355104	0.0199652358426974	1.14597988355104	462.526427228781	0	8.05812504708916						233	10	4	NaN	NaN	NaN	2.2981E-17	1	27101	146.58	130.96	1	53372			1200	1298	1005	1027	1200	1200		
AMLDQLMGTSR	11	Unmodified	_AMLDQLMGTSR_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.799565	1221.58458	0.8229	0.00050345	-2.1263	-0.0013009	-1.3034	-0.00079744	611.797675751158	12.29	0.20396	12.29	12.219	12.423	0	585	67	0.932794566565362	0.0445894277136889	0.932794566565362	377.834632928518	0	18.0612437685269						855	24	5	NaN	NaN	NaN	0.00029666	1	10058	94.804	76.401	1	378110			1201	3372	1006	1028	1201	1201		
AMLSGPGQFAENETNEVNFR	20	Unmodified	_AMLSGPGQFAENETNEVNFR_			0	0	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1106.01039	2210.00623	1.5762	0.0017432	-0.12748	-0.00014099	1.4487	0.0016022	1106.51192023052	13.034	0.24829	13.034	12.866	13.114	0	129	73	1.23753038177212	0.0476344913677877	1.23753038177212	498.75695592041	0	19.1979399143268						1418	29	5	NaN	NaN	NaN	8.4776E-29	1	34785	162	155.48	1	443320			1202	1835	1007	1029	1202	1202		
AMLSGPGQFAENETNEVNFR	20	Oxidation (M)	_AM(Oxidation (M))LSGPGQFAENETNEVNFR_	AM(1)LSGPGQFAENETNEVNFR	AM(56)LSGPGQFAENETNEVNFR	0	1	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1114.00785	2226.00115	1.3573	0.001512	-0.33005	-0.00036767	1.0273	0.0011444	1114.00733947907	11.846	0.1419	11.846	11.775	11.917	0	129	64	1.23753038177212	0.0416887472566487	1.23753038177212	498.734567087145	0	16.8008960601654						558	17	4	NaN	NaN	NaN	6.1972E-07	1	34947	56.473	53.926	1	117710			1203	1835	1007	1030	1203	1203	575	
AMLSTGFK	8	Unmodified	_AMLSTGFK_			0	0	0	P31327;P27708	P31327;P27708	P31327	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.725664	853.436775	-0.86928	-0.00037182	-1.4688	-0.00062823	-2.3381	-0.001	427.725108677311	6.8619	0.15072	6.8619	6.8175	6.9683	0	822	34	0.771863999559055	0.0225297797973347	0.771863999559055	314.150767388577	0	9.16968224515159						290	18	3	NaN	NaN	NaN	0.012201	1	1613	58.286	41.738	1	118190			1204	922;867	1008	1031	1204	1204		
AMMYSGELK	9	Unmodified	_AMMYSGELK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.240821	1028.46709	0.70034	0.00036084	1.8967	0.00097724	2.597	0.0013381	515.241689091734	6.7821	0.15073	6.7821	6.7377	6.8885	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	354.73024069372	0	8.2565698502105						228	18	2	NaN	NaN	NaN	0.061186	1	4944	24.121	20.306	1	89772			1205	666	1009	1032	1205	1205		
AMQADISQAAQILSSDPSR	19	Unmodified	_AMQADISQAAQILSSDPSR_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.988928	1987.9633	1.7942	0.0017853	2.7936	0.0027796	4.5878	0.0045648	994.992935358997	14.178	0.13301	14.178	14.125	14.258	0	186	73	1.1997861197946	0.0477391676706422	1.1997861197946	483.882278779838	0	19.2535459932456						492	16	3	NaN	NaN	NaN	9.6462E-11	1	31420	122.13	112.97	1	140910			1206	1042	1010	1033	1206	1206		
AMQDALADLPEWYGIK	16	Unmodified	_AMQDALADLPEWYGIK_			0	0	0	Q15031	Q15031	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.948012	1819.88147	0.86893	0.00079155	1.8091	0.001648	2.678	0.0024395	910.950960832768	17.982	0.10639	17.982	17.938	18.045	0	279	49	1.13799159301878	0.0319575665348772	1.13799159301878	459.253907644151	0	12.8969646172932						335	13	4	NaN	NaN	NaN	0.0042324	1	27718	43.518	36.378	1	66485			1207	1797	1011	1034	1207	1207		
AMSLVSNEGEGEQNEIR	17	Unmodified	_AMSLVSNEGEGEQNEIR_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.931079	1861.84761	2.374	0.0022124	-1.8423	-0.0017169	0.53177	0.00049557	932.430819056426	8.0325	0.088793	8.0325	8.0059	8.0947	0	315	40	1.11400032671325	0.0260102225300953	1.11400032671325	449.495228546809	0	10.4950336551634						253	11	3	NaN	NaN	NaN	8.8029E-14	1	28732	157.67	138.86	1	61117			1208	1758	1012	1035	1208	1208		
AMSLVSSDSEGEQNELR	17	Unmodified	_AMSLVSSDSEGEQNELR_			0	0	0	Q14643	Q14643	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.423087	1850.83162	2.2577	0.0020916	-0.088987	-8.2439E-05	2.1688	0.0020092	926.423010341028	8.5027	0.079811	8.5027	8.4672	8.547	0	279	37	1.13799159301878	0.0239747667739112	1.13799159301878	459.195825884107	0	9.67416006995347						209	10	3	NaN	NaN	NaN	6.5548E-07	1	28507	109.47	94.493	1	46996			1209	1759	1013	1036	1209	1209		
AMSQDGASQFQEVIR	15	Unmodified	_AMSQDGASQFQEVIR_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.896311	1665.77807	2.326	0.0019397	0.21009	0.00017519	2.5361	0.0021149	833.896780045642	9.9396	0.1862	9.9396	9.8243	10.01	0	387	52	1.06589869032374	0.0341119209023848	1.06589869032374	430.460558101837	0	13.7760151530972						362	22	3	NaN	NaN	NaN	1.8715E-06	1	23503	112.95	103.69	1	81156			1210	1912	1014	1037	1210	1210		
AMSSGGSGGGVPEQEDSVLFR	21	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AMSSGGSGGGVPEQEDSVLFR_			1	0	0	Q16637	Q16637	Q16637	SMN1	Survival motor neuron protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.9813	2107.94805	1.805	0.0019042	1.8271	0.0019275	3.6321	0.0038318	1055.48411073442	14.347	0.15071	14.347	14.285	14.435	0	126	37	1.23951419873743	0.0238041759659224	1.23951419873743	499.707547665205	0	9.59660357923985						419	18	4	NaN	NaN	NaN	0.00017656	1	33432	65.212	64.197	1	90350			1211	1896	1015	1038	1211	1211		
AMTEDGFLAVCSEAK	15	Unmodified	_AMTEDGFLAVCSEAK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.868373	1627.72219	2.2911	0.0018669	-1.1269	-0.0009183	1.1641	0.00094862	814.867847012718	11.323	0.079857	11.323	11.287	11.367	0	288	43	1.13199748998575	0.0279898124125677	1.13199748998575	457.242563236319	0	11.3057967753862						221	10	3	NaN	NaN	NaN	0.0043091	1	22392	72.846	66.099	1	42526			1212	581	1016	1039	1212	1212		
AMTEDGFLAVCSEAK	15	Unmodified	_AMTEDGFLAVCSEAK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.868373	1627.72219	2.2271	0.0018148	-0.99808	-0.0008133	1.229	0.0010015	814.867848379567	11.323	0.32814	11.323	11.225	11.553	0	381	40	1.06991323971056	0.0260891796066893	1.06991323971056	432.165155807242	0	10.538082856754						648	38	5	NaN	NaN	NaN	6.9971E-09	1	22393	108.24	98.982	1	174600			1213	581	1016	1039	1213	1213		
AMTGVEQWPYR	11	Unmodified	_AMTGVEQWPYR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.31898	1336.62341	1.6549	0.0011076	-0.12615	-8.4433E-05	1.5287	0.0010232	669.319354453564	9.975	0.30146	9.975	9.8154	10.117	0	537	43	0.965173861991602	0.0283005258697965	0.965173861991602	390.573908488887	0	11.4522858901803						1132	35	5	NaN	NaN	NaN	5.5697E-23	1	13486	195.58	128.07	1	802300			1214	1129	1017	1040	1214	1214		
AMTGVEQWPYR	11	Oxidation (M)	_AM(Oxidation (M))TGVEQWPYR_	AM(1)TGVEQWPYR	AM(120)TGVEQWPYR	0	1	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.316437	1352.61832	1.5517	0.001051	0.54709	0.00037055	2.0988	0.0014216	677.317008472223	8.21	0.26617	8.21	8.068	8.3342	0	543	28	0.961130371139249	0.0181969696158962	0.961130371139249	388.890568898146	0	7.36281994476991						457	31	4	NaN	NaN	NaN	0.00026366	1	13953	121.8	102.54	1	115580			1215	1129	1017	1041	1215	1215	402	
AMTILLEEAK	10	Unmodified	_AMTILLEEAK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.809925	1117.6053	1.0337	0.00057867	-3.191	-0.0017864	-2.1573	-0.0012077	560.309307492343	11.332	0.12419	11.332	11.287	11.412	0	600	40	0.922661313351899	0.0263501137530128	0.922661313351899	374.118314239202	0	10.6843757233902						255	15	3	NaN	NaN	NaN	0.053802	1	7205	46.447	38.8	1	73427			1216	1273	1018	1042	1216	1216		
AMTLMEYLIK	10	Unmodified	_AMTLMEYLIK_			0	0	0	Q9Y6I3	Q9Y6I3	Q9Y6I3	EPN1	Epsin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.821978	1211.6294	-0.46405	-0.00028159	-0.46569	-0.00028259	-0.92974	-0.00056419	606.821812454578	17.291	0.13303	17.291	17.255	17.388	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	381.971383873058	0	9.8415753090847						319	16	4	NaN	NaN	NaN	0.0047017	1	9783	76.605	63.777	1	81094			1217	3466	1019	1043	1217	1217		
AMVDPAQTVEQR	12	Unmodified	_AMVDPAQTVEQR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.832451	1343.65035	1.6759	0.0011276	-2.7669	-0.0018616	-1.0909	-0.00073402	672.829313961172	6.986	0.37247	6.986	6.8264	7.1989	0	507	55	0.985374541851584	0.0363612334890161	0.985374541851584	398.727124419091	0	14.7134002895625						607	43	2	NaN	NaN	NaN	0.037516	1	13706	44.598	29.45	1	279320			1218	1163	1020	1044	1218	1218		
AMVEEMQGHLK	11	Unmodified	_AMVEEMQGHLK_			0	0	0	Q9Y4P3	Q9Y4P3	Q9Y4P3	TBL2	Transducin beta-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.80739	1271.60023	1.8472	0.0011763	1.7582	0.0011196	3.6054	0.002296	636.808258420297	5.8066	0.13299	5.8066	5.7357	5.8687	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.957036861047	0	8.17316841372701						329	16	4	NaN	NaN	NaN	0.00052969	1	11536	74.269	62.202	1	99972			1219	3413	1021	1045	1219	1219		
AMVEYEIDLQK	11	Unmodified	_AMVEYEIDLQK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.834128	1337.6537	1.7623	0.0011805	0.6304	0.00042226	2.3927	0.0016027	669.834708413184	10.915	0.39017	10.915	10.809	11.199	0	483	55	1.00151498427745	0.0363059678066375	1.00151498427745	405.276759933099	0	14.6917072933511						722	45	3	NaN	NaN	NaN	0.0025186	1	13524	67.507	61.641	1	195800			1220	611	1022	1046	1220	1220		
AMVSEFLK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AMVSEFLK_			1	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.751879	965.489204	-1.6797	-0.00081257	0.76668	0.00037088	-0.91306	-0.00044169	483.75212691114	18.053	0.133	18.053	18.009	18.142	0	729	28	0.835224628594324	0.0183566683857203	0.835224628594324	339.313943078861	0	7.45748307522086						190	16	3	NaN	NaN	NaN	0.0098175	1	3551	42.835	35.484	1	42483			1221	506	1023	1047	1221	1221		
ANATVDGLEQGYVVCPSEK	19	Unmodified	_ANATVDGLEQGYVVCPSEK_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.98331	2035.95207	1.8221	0.0018567	-0.48482	-0.00049403	1.3373	0.0013627	1019.48440412082	10.321	0.097533	10.321	10.268	10.365	0	216	34	1.17988115188462	0.0219120107549011	1.17988115188462	475.776694245794	0	8.8358255614076						250	12	3	NaN	NaN	NaN	2.7801E-07	1	32258	103.17	94.804	1	47212			1222	3072	1025	1048	1222	1222		
ANCIDSTASAEAVFASEVK	19	Unmodified	_ANCIDSTASAEAVFASEVK_			0	0	0	P22087	P22087	P22087	FBL	rRNA 2-O-methyltransferase fibrillarin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.462212	1968.90987	1.7919	0.0017659	1.3551	0.0013354	3.147	0.0031012	985.463682408182	13.247	0.28373	13.247	13.203	13.487	0	216	46	1.17988115188462	0.0298800183306296	1.17988115188462	475.886396867168	0	12.0516326911193						847	33	5	NaN	NaN	NaN	2.4066E-10	1	31092	116.06	110.67	1	225140			1223	800	1026	1049	1223	1223		
ANDDIIVNWVNR	12	Unmodified	_ANDDIIVNWVNR_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.86514	1427.71573	1.9478	0.0013924	-0.04864	-3.4771E-05	1.8992	0.0013577	714.865529491402	13.797	0.21281	13.797	13.708	13.921	0	471	46	1.00957851518677	0.0302319815976242	1.00957851518677	408.276140054477	0	12.2258908714916						796	25	5	NaN	NaN	NaN	7.7417E-18	1	16317	211.84	184.89	1	662450			1224	683	1027	1050	1224	1224		
ANDDLADAGLEK	12	Unmodified	_ANDDLADAGLEK_			0	0	0	Q9HB90;Q9NQL2	Q9HB90	Q9HB90	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.293682	1230.57281	1.3289	0.00081899	4.6959	0.0028941	6.0248	0.0037131	616.296223377257	6.3476	0.1596	6.3476	6.2767	6.4363	0	576	34	0.938871150116794	0.0222777233789591	0.938871150116794	380.264928823184	0	9.02300267080159						195	19	4	NaN	NaN	NaN	0.010526	1	10317	39.702	36.357	1	52936			1225	2951	1028	1051	1225	1225		
ANDEANQSDTSVSLSEPK	18	Unmodified	_ANDEANQSDTSVSLSEPK_			0	0	0	O95684	O95684	O95684	FGFR1OP	FGFR1 oncogene partner	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.429423	1890.84429	2.4623	0.0023304	-1.7242	-0.0016318	0.73805	0.00069851	946.427499053876	5.8155	0.053179	5.8155	5.7978	5.8509	0	297	22	1.12600091227925	0.0139939408517145	1.12600091227925	454.285890339754	0	5.64586565592975						75	7	2	NaN	NaN	NaN	2.4274E-05	1	29379	80.128	76.145	1	14224			1226	447	1029	1052	1226	1226		
ANDTTFGLAAGVFTR	15	Unmodified	_ANDTTFGLAAGVFTR_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.891355	1539.76816	0.93687	0.00072222	-4.7845	-0.0036884	-3.8477	-0.0029661	771.385584819221	14.781	0.23943	14.781	14.701	14.941	0	402	61	1.05585747106793	0.0401953809989963	1.05585747106793	426.693206797816	0	16.2437606276295						596	28	3	NaN	NaN	NaN	0.00018273	1	19716	91.032	87.687	1	245510			1227	1123	1030	1053	1227	1227		
ANDVLLSHMITFLNDK	16	Unmodified	_ANDVLLSHMITFLNDK_			0	0	0	Q99570	Q99570	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.985466	1829.93457	-1.6079	-0.00098241	-0.33501	-0.00020469	-1.9429	-0.0011871	610.985288254258	17.743	0.035463	17.743	17.734	17.77	0	729	10	0.835224628594324	0.00611888892990919	0.835224628594324	505.57841231185	0	3.70388760626292						25	5	2	NaN	NaN	NaN	0.0681	1	27971	13.345	13.136	1	4203.7			1228	2651	1031	1054	1228	1228		
ANDYANAVLQALSNVPPLR	19	Unmodified	_ANDYANAVLQALSNVPPLR_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.53945	2025.06434	1.5325	0.0015533	-1.0564	-0.0010707	0.47615	0.0004826	1014.04020569492	19.836	0.11527	19.836	19.809	19.924	0	192	37	1.1958073123591	0.0238728485495119	1.1958073123591	482.216339023867	0	9.62686672897678						309	14	4	NaN	NaN	NaN	7.4546E-13	1	32066	117.03	113.59	1	60500			1229	1949	1032	1055	1229	1229		
ANEAYPCPCDIGHR	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ANEAYPCPCDIGHR_			1	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.359038	1700.70352	3.0385	0.0025869	-0.87738	-0.00074696	2.1611	0.0018399	851.358927185432	8.1922	0.42589	8.1922	7.9793	8.4051	0	348	70	1.09197348738011	0.0461196378289161	1.09197348738011	440.916086490448	0	18.6221464686569						2123	49	5	NaN	NaN	NaN	0.00013148	1	24504	88.734	86.892	1	918130			1230	2504	1033	1056	1230	1230		
ANEFHDVNCEVVAVSVDSHFSHLAWINTPR	30	Unmodified	_ANEFHDVNCEVVAVSVDSHFSHLAWINTPR_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	863.412557	3449.62112	1.8163	0.0015682	0.8541	0.00073744	2.6704	0.0023056	863.914664973243	15.42	0.13312	15.42	15.375	15.508	0	390	34	1.06389100039157	0.0220876383289843	1.06389100039157	855.621586413866	0	17.7637184074549						403	16	6	NaN	NaN	NaN	1.6179E-06	1	38635	50.521	50.46	1	95054			1231	898	1034	1057	1231	1231		
ANEFLEVGK	9	Unmodified	_ANEFLEVGK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.763832	1005.51311	0.068296	3.4405E-05	0.80591	0.00040599	0.87421	0.00044039	503.764564057343	8.0237	0.15975	8.0237	7.9704	8.1302	0	711	31	0.847456455381371	0.0203750522723063	0.847456455381371	344.090699812433	0	8.27283331264232						221	19	2	NaN	NaN	NaN	0.026055	1	4405	43.734	30.907	1	89280			1232	1728	1035	1058	1232	1232		
ANEHQGIGFLNDPR	14	Unmodified	_ANEHQGIGFLNDPR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.258577	1566.7539	-0.62954	-0.00032941	-0.14913	-7.8034E-05	-0.77867	-0.00040744	523.258475348845	7.6688	0.097597	7.6688	7.6334	7.7309	0	789	31	0.794378096728713	0.0204516951022167	0.794378096728713	481.459566730516	0	12.3954377686984						210	12	4	NaN	NaN	NaN	0.017316	1	20553	47.361	37.111	1	43803			1233	2442	1036	1059	1233	1233		
ANEHQGIGFLNDPR	14	Unmodified	_ANEHQGIGFLNDPR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.384228	1566.7539	2.887	0.0022646	-1.3091	-0.0010268	1.5779	0.0012377	784.383562292226	7.6688	0.1508	7.6688	7.5801	7.7309	0	387	40	1.06589869032374	0.0261071745349262	1.06589869032374	430.684932454749	0	10.5488136942395						287	18	3	NaN	NaN	NaN	0.016395	1	20554	36.46	31.631	1	72016			1234	2442	1036	1059	1234	1234		
ANENSNIQVLSER	13	Unmodified	_ANENSNIQVLSER_			0	0	0	Q6UN15	Q6UN15	Q6UN15	FIP1L1	Pre-mRNA 3-end-processing factor FIP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.368244	1472.72193	1.464	0.0010795	-0.58564	-0.00043183	0.87832	0.00064765	737.368129566364	6.8087	0.12416	6.8087	6.7732	6.8974	0	486	34	0.999498404980629	0.0221823754430851	0.999498404980629	404.081177632385	0	8.96797868516785						227	15	4	NaN	NaN	NaN	0.00019321	1	17662	59.67	49.42	1	51120			1235	2084	1037	1060	1235	1235		
ANEPTHFTVDCTEAGEGDVSVGIK	24	Unmodified	_ANEPTHFTVDCTEAGEGDVSVGIK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	845.055225	2532.14385	2.0037	0.0016932	-0.053218	-4.4972E-05	1.9504	0.0016482	845.389105671985	10.037	0.15073	10.037	10.01	10.161	0	381	64	1.06991323971056	0.0421556968766068	1.06991323971056	646.288601693595	0	25.464444570451						382	18	4	NaN	NaN	NaN	2.7051E-06	1	36966	81.449	79.199	1	74348			1236	326	1038	1061	1236	1236		
ANFQEIISALPFVK	14	Unmodified	_ANFQEIISALPFVK_			0	0	0	Q9C0D5	Q9C0D5	Q9C0D5	TANC1	Protein TANC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.940316	1575.86608	1.232	0.00097199	-1.4144	-0.0011159	-0.18242	-0.00014391	788.939218402365	19.809	0.044334	19.809	19.791	19.836	0	393	25	1.0618830335572	0.0160648436588446	1.0618830335572	429.040638930618	0	6.49080037056626						82	6	3	NaN	NaN	NaN	0.0010484	1	20861	64.266	61.181	1	14621			1237	2821	1039	1062	1237	1237		
ANFWYQPSFHGVDLSALR	18	Unmodified	_ANFWYQPSFHGVDLSALR_			0	0	0	Q86X55	Q86X55	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.349796	2107.02756	-0.44703	-0.00031442	-1.7904	-0.0012592	-2.2374	-0.0015737	703.682755247417	16.377	0.070928	16.377	16.351	16.422	0	627	109	0.90440375274676	0.0729848134979034	0.90440375274676	546.912577654832	0	44.135500719193						428	9	4	NaN	NaN	NaN	0.00047478	1	33419	49.487	43.282	1	92707			1238	2183	1040	1063	1238	1238		
ANHEEVLAAGK	11	Unmodified	_ANHEEVLAAGK_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.796195	1137.57784	2.1427	0.0012209	-1.1265	-0.00064187	1.0162	0.00057904	569.795592206903	2.5256	0.23058	2.5256	2.499	2.7296	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.681783182201	0	8.21642219784542						329	27	3	NaN	NaN	NaN	1.9543E-07	1	7738	110.88	78.932	1	68360			1239	480	1041	1064	1239	1239		
ANHFFTVTDPR	11	Unmodified	_ANHFFTVTDPR_			0	0	0	Q9H9B4	Q9H9B4	Q9H9B4	SFXN1	Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.822744	1303.63093	1.65	0.0010772	1.9005	0.0012407	3.5505	0.0023178	653.325720101967	7.4383	0.27486	7.4383	7.261	7.5358	0	504	43	0.987393073566096	0.0282692223025561	0.987393073566096	399.668745686704	0	11.4425803883715						397	32	3	NaN	NaN	NaN	3.4923E-08	1	12459	116.13	104.77	1	98542			1240	2933	1042	1065	1240	1240		
ANINVENAFFTLAR	14	Unmodified	_ANINVENAFFTLAR_			0	0	0	P61006	P61006	P61006	RAB8A	Ras-related protein Rab-8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.414997	1578.81544	0.63367	0.00050086	1.2708	0.0010045	1.9045	0.0015053	790.416228423947	16.963	0.16851	16.963	16.91	17.078	0	396	58	1.05987478976334	0.0381461250343338	1.05987478976334	428.222254433458	0	15.412216440916						727	20	4	NaN	NaN	NaN	7.8401E-17	1	20941	126.48	112.02	1	265000			1241	1319	1043	1066	1241	1241		
ANIPIMDTGENPEVPFPR	18	Unmodified	_ANIPIMDTGENPEVPFPR_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.993482	1995.97241	1.4474	0.0014459	-3.844	-0.0038402	-2.3967	-0.0023943	999.491001417742	14.95	0.11536	14.95	14.905	15.021	0	204	28	1.18784641916898	0.0179181611702801	1.18784641916898	479.053605194824	0	7.22632115445515						278	14	4	NaN	NaN	NaN	8.0459E-08	1	31559	80.128	77.043	1	69798			1242	2454	1044	1067	1242	1242		
ANIVAYHDSIMNPDYNVEFFR	21	Unmodified	_ANIVAYHDSIMNPDYNVEFFR_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	839.061875	2514.16379	1.2602	0.0010574	0.32753	0.00027482	1.5877	0.0013322	839.396531167585	15.118	0.097547	15.118	15.065	15.163	0	510	88	0.983355730988811	0.0584727763596663	0.983355730988811	594.026115096992	0	35.3222695361126						463	12	3	NaN	NaN	NaN	0.00022955	1	36897	63.947	59.506	1	90852			1243	3188	1045	1068	1243	1243		
ANIVHLMLSSPEQIQK	16	Unmodified	_ANIVHLMLSSPEQIQK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.329344	1806.9662	-0.7664	-0.00046239	-0.60165	-0.000363	-1.3681	-0.00082539	603.663558617161	12.449	0.079804	12.449	12.423	12.502	0	702	37	0.853568545818287	0.0244466676100031	0.853568545818287	516.731704833905	0	14.799477199004						242	10	3	NaN	NaN	NaN	0.025675	1	27402	20.611	15.224	1	58488			1244	1264	1046	1069	1244	1244		
ANIVHLMLSSPEQIQK	16	Unmodified	_ANIVHLMLSSPEQIQK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.329344	1806.9662	0.11315	6.8267E-05	-0.70398	-0.00042473	-0.59083	-0.00035646	603.6634003915	12.458	0.19508	12.458	12.405	12.6	0	645	46	0.892219381832517	0.0304841838877806	0.892219381832517	540.130074940496	0	18.4544573488066						622	23	5	NaN	NaN	NaN	1.1281E-05	1	27404	97.594	76.233	1	264560			1245	1264	1046	1069	1245	1245		
ANIVHLMLSSPEQIQK	16	Unmodified	_ANIVHLMLSSPEQIQK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.490378	1806.9662	1.8865	0.0017063	-0.47547	-0.00043006	1.4111	0.0012763	904.490643765862	12.449	0.21279	12.449	12.387	12.6	0	261	61	1.14997238118939	0.039924995069111	1.14997238118939	464.114032684282	0	16.1132134732317						574	25	5	NaN	NaN	NaN	0.0024287	1	27407	67.838	46.477	1	219180			1246	1264	1046	1069	1246	1246		
ANLEAFTVDK	10	Unmodified	_ANLEAFTVDK_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.287671	1106.56079	0.013671	7.5776E-06	-0.99332	-0.00055058	-0.97965	-0.00054301	554.28730596482	8.8044	0.20418	8.8044	8.7511	8.9553	0	684	46	0.86578508874114	0.0305180491511973	0.86578508874114	351.098964860816	0	12.3758835834611						296	24	3	NaN	NaN	NaN	0.0080273	1	6889	55.235	40.7	1	79924			1247	944	1047	1070	1247	1247		
ANLLEIAPHLSAPLPIMLPVYK	22	Unmodified	_ANLLEIAPHLSAPLPIMLPVYK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.79563	2399.36506	0.7068	0.00056601	-0.59695	-0.00047804	0.10985	8.7969E-05	801.129357719474	19.862	0.044336	19.862	19.845	19.889	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	589.301241503702	0	12.206047347333						152	6	5	NaN	NaN	NaN	4.7539E-08	1	36343	85.513	85.471	1	56008			1248	1064	1048	1071	1248	1248		
ANLLEIAPHLSAPLPIMLPVYK	22	Oxidation (M)	_ANLLEIAPHLSAPLPIM(Oxidation (M))LPVYK_	ANLLEIAPHLSAPLPIM(1)LPVYK	ANLLEIAPHLSAPLPIM(63)LPVYK	0	1	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	806.127268	2415.35997	0.3698	0.00029811	-2.3355	-0.0018827	-1.9657	-0.0015846	806.45925201774	19.357	0.053192	19.357	19.33	19.383	0	522	22	0.975277694896658	0.0141414531232522	0.975277694896658	589.278784720469	0	8.5444979970905						114	7	4	NaN	NaN	NaN	4.5266E-05	1	36423	63.025	60.575	1	18401			1249	1064	1048	1072	1249	1249	378	
ANLPQSFQVDTSK	13	Unmodified	_ANLPQSFQVDTSK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.864805	1433.71506	2.1786	0.001564	-0.29653	-0.00021287	1.8821	0.0013511	718.365642307222	8.7245	0.32844	8.7245	8.6268	8.9553	0	435	91	1.03374239103424	0.0604347816734667	1.03374239103424	418.031289453092	0	24.4389994353426						1163	38	4	NaN	NaN	NaN	0.0072017	1	16498	42.061	26.913	1	519990			1250	792	1049	1073	1250	1250		
ANLQELDQFLGPYPYATLK	19	Unmodified	_ANLQELDQFLGPYPYATLK_			0	0	0	Q9Y312	Q9Y312	Q9Y312	AAR2	Protein AAR2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.06496	2180.11537	0.29207	0.00031866	-0.08531	-9.3079E-05	0.20676	0.00022559	1091.56580100549	18.47	0.053276	18.47	18.452	18.506	0	114	49	1.24744674793813	0.0317171628708794	1.24744674793813	502.7965696191	0	12.7839370425129						199	7	3	NaN	NaN	NaN	0.0011764	1	34458	48.892	45.818	1	37882			1251	3362	1050	1074	1251	1251		
ANLQIDQINTDLNLER	16	Unmodified	_ANLQIDQINTDLNLER_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.486879	1868.9592	2.0701	0.0019365	-0.3849	-0.00036006	1.6852	0.0015765	935.48730772183	13.966	0.16848	13.966	13.912	14.081	0	261	61	1.14997238118939	0.039914016914268	1.14997238118939	463.996763492051	0	16.1047125732121						983	20	6	NaN	NaN	NaN	8.2199E-44	1	28913	234.58	211.62	1	435670			1252	972	1051	1075	1252	1252		
ANLVLLSGANEGK	13	Unmodified	_ANLVLLSGANEGK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.359159	1284.70376	2.296	0.0014771	-0.83923	-0.00053993	1.4567	0.0009372	643.358582844678	9.8066	0.13308	9.8066	9.7445	9.8776	0	465	100	1.01360860968299	0.0665748046223408	1.01360860968299	410.343442172586	0	26.9517585286125						516	16	3	NaN	NaN	NaN	4.2991E-06	1	11904	129.69	100.38	1	118320			1253	240	1052	1076	1253	1253		
ANNIDYTVHSVR	12	Unmodified	_ANNIDYTVHSVR_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.84949	1387.68443	2.3923	0.0016623	-1.3732	-0.00095418	1.019	0.00070807	694.848227512681	5.1238	0.079799	5.1238	5.0972	5.177	0	453	22	1.02166545906632	0.0140965660785977	1.02166545906632	413.278476023966	0	5.70226515385781						111	10	3	NaN	NaN	NaN	0.0075643	1	15071	57.293	49.292	1	22700			1254	883	1053	1077	1254	1254		
ANNYNEAVYLVR	12	Unmodified	_ANNYNEAVYLVR_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.35969	1424.70483	2.0946	0.0014942	0.99214	0.00070775	3.0868	0.002202	713.360600125798	9.6292	0.16847	9.6292	9.576	9.7445	0	435	40	1.03374239103424	0.0261576594975734	1.03374239103424	418.056546055837	0	10.5784389585878						315	20	2	NaN	NaN	NaN	6.3367E-06	1	16225	136.84	99.091	1	170340			1255	1583	1054	1078	1255	1255		
ANPDPNCCLGVFGLSLYTTER	21	Unmodified	_ANPDPNCCLGVFGLSLYTTER_			0	0	0	P62995	P62995	P62995	TRA2B	Transformer-2 protein homolog beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1192.55411	2383.09367	0.49678	0.00059243	1.2216	0.0014568	1.7184	0.0020492	1193.0566092823	17.495	0.097546	17.495	17.459	17.557	0	63	49	1.28111162701928	0.0316650717164555	1.28111162701928	516.086982221845	0	12.7560557248287						469	12	5	NaN	NaN	NaN	0.00090716	1	36266	43.767	43.403	1	89711			1256	1421	1055	1079	1256	1256		
ANPFGGASHAK	11	Unmodified	_ANPFGGASHAK_			0	0	0	P62266	P62266	P62266	RPS23	40S ribosomal protein S23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.764697	1055.51484	1.82	0.00096237	-0.94904	-0.00050182	0.871	0.00046055	528.764005317925	2.4724	0.28376	2.4724	2.4281	2.7119	0	627	37	0.90440375274676	0.0243619867259138	0.90440375274676	366.97796316564	0	9.88531089150354						464	33	2	NaN	NaN	NaN	0.0036397	1	5597	55.235	45.156	1	145090			1257	1377	1056	1080	1257	1257		
ANPHNYDAWFDYLR	14	Unmodified	_ANPHNYDAWFDYLR_			0	0	0	Q9BZJ0	Q9BZJ0	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.605866	1780.79577	-0.79996	-0.00047566	-1.7229	-0.0010244	-2.5228	-0.0015001	594.938944900755	14.471	0.070964	14.471	14.435	14.506	0	711	28	0.847456455381371	0.0183464663932061	0.847456455381371	513.088938489811	0	11.107790738927						143	9	4	NaN	NaN	NaN	0.03605	1	26693	16.759	14.623	1	25051			1258	2813	1057	1081	1258	1258		
ANPQVGVAFPHIK	13	Unmodified	_ANPQVGVAFPHIK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.385511	1376.75647	1.5042	0.001037	1.3491	0.00093003	2.8533	0.001967	689.386157206571	9.3632	0.32812	9.3632	9.1681	9.4962	0	405	37	1.05384839605172	0.02411056734266	1.05384839605172	426.330308925135	0	9.75383713830894						774	38	4	NaN	NaN	NaN	0.067829	1	14718	29.755	24.259	1	302180			1259	674	1058	1082	1259	1259		
ANQELGLALDSWDLDFYTK	19	Unmodified	_ANQELGLALDSWDLDFYTK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1100.03386	2198.05316	-0.22728	-0.00025002	1.2874	0.0014162	1.0601	0.0011662	1100.53722164387	19.348	0.053192	19.348	19.33	19.383	0	84	34	1.26725910986255	0.021783152761973	1.26725910986255	510.755753262988	0	8.77947572899353						136	7	3	NaN	NaN	NaN	6.1616E-07	1	34654	80.128	68.448	1	24375			1260	141	1059	1083	1260	1260		
ANQLAEEIESSAQYK	15	Unmodified	_ANQLAEEIESSAQYK_			0	0	0	Q99700	Q99700	Q99700	ATXN2	Ataxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.907399	1679.80024	2.4789	0.0020845	-7.2213	-0.0060724	-4.7423	-0.0039879	840.899209930755	11.252	0.17738	11.252	11.181	11.358	0	351	73	1.08996939197032	0.0480883834850949	1.08996939197032	440.151164394188	0	19.4190388654283						457	21	3	NaN	NaN	NaN	0.0021161	1	23904	48.822	45.318	1	134060			1261	2665	1060	1084	1261	1261		
ANQQETEQFYFTK	13	Unmodified	_ANQQETEQFYFTK_			0	0	0	O75044	O75044	O75044	SRGAP2	SLIT-ROBO Rho GTPase-activating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.378277	1632.742	2.0152	0.0016472	4.0566	0.0033158	6.0718	0.0049629	818.386086343618	8.7599	0.15087	8.7599	8.6979	8.8487	0	363	31	1.08195024817156	0.0200533881003893	1.08195024817156	437.015852157951	0	8.09986272858288						315	18	5	NaN	NaN	NaN	0.0044609	1	22558	54.27	44.02	1	70349			1262	299	1061	1085	1262	1262		
ANSGLSMESIHVPDPVISIAMK	22	Unmodified	_ANSGLSMESIHVPDPVISIAMK_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.060706	2295.16029	0.021336	1.6345E-05	-1.8282	-0.0014005	-1.8069	-0.0013842	766.393671142197	16.377	0.11528	16.377	16.315	16.431	0	549	37	0.957085760909907	0.0242743844973287	0.957085760909907	578.46006196911	0	14.671372758944						308	14	4	NaN	NaN	NaN	0.067353	1	35602	5.3295	5.2305	1	56421			1263	2612	1062	1086	1263	1263		
ANSNLVLQADR	11	Unmodified	_ANSNLVLQADR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.820201	1199.62585	1.5111	0.00090788	-1.498	-0.00090002	0.013071	7.8535E-06	600.81941970811	5.9929	0.19515	5.9929	5.9219	6.117	0	606	34	0.918606045818476	0.0223055201987317	0.918606045818476	372.163560919241	0	9.03684649486451						249	23	3	NaN	NaN	NaN	3.3247E-05	1	9449	120.65	95.399	1	85429			1264	350	1063	1087	1264	1264		
ANTFVAELK	9	Unmodified	_ANTFVAELK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.7742	991.533846	0.28582	0.00014199	-0.87305	-0.00043371	-0.58723	-0.00029172	496.773847314148	8.3253	0.12411	8.3253	8.2544	8.3785	0	705	52	0.851531465363931	0.0346303797525405	0.851531465363931	345.811067045729	0	14.0635655422394						447	15	4	NaN	NaN	NaN	0.0014838	1	4094	91.783	71.124	1	256780			1265	1023	1064	1088	1265	1265		
ANVDISAPK	9	Unmodified	_ANVDISAPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.750724	913.486896	-0.97085	-0.00044441	1.1696	0.0005354	0.19879	9.0996E-05	457.751382656502	4.6805	0.11527	4.6805	4.6361	4.7514	0	780	46	0.800512323802183	0.0306540760963989	0.800512323802183	325.471706163689	0	12.4633114960413						251	14	2	NaN	NaN	NaN	0.048758	1	2564	29.31	19.916	1	71033			1266	1584	1065	1089	1266	1266		
ANVEAIMLAVMK	12	Unmodified	_ANVEAIMLAVMK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.351434	1288.68831	0.85816	0.00055381	-0.97433	-0.00062878	-0.11617	-7.497E-05	645.351129915057	17.858	0.12413	17.858	17.805	17.929	0	480	37	1.00353128488872	0.0241972834927519	1.00353128488872	406.25043504842	0	9.7955660116869						363	15	4	NaN	NaN	NaN	0.0002109	1	12027	83.438	70.842	1	133270			1267	209	1066	1090	1267	1267		
ANVELDHATLVR	12	Unmodified	_ANVELDHATLVR_			0	0	0	Q9Y4P3	Q9Y4P3	Q9Y4P3	TBL2	Transducin beta-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.362233	1336.70991	1.7335	0.0011603	1.456	0.00097461	3.1895	0.002135	669.36402609731	6.8087	0.14183	6.8087	6.7732	6.9151	0	483	49	1.00151498427745	0.0322585904613818	1.00151498427745	405.279682575554	0	13.0539747360402						294	17	4	NaN	NaN	NaN	4.6053E-05	1	13504	108.2	66.121	1	92163			1268	3413	1067	1091	1268	1268		
ANVNEILDFFHGYR	14	Unmodified	_ANVNEILDFFHGYR_			0	0	0	Q8IXT5	Q8IXT5	Q8IXT5	RBM12B	RNA-binding protein 12B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.614361	1693.82125	-0.96505	-0.00054584	-0.29534	-0.00016705	-1.2604	-0.00071289	565.614230202939	17.167	0.097538	17.167	17.131	17.229	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	520.694672135765	0	11.0998482428964						249	12	4	NaN	NaN	NaN	0.0010539	1	24309	51.531	47.003	1	65856			1269	2214	1068	1092	1269	1269		
ANVTVLDTQIR	11	Unmodified	_ANVTVLDTQIR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.346052	1228.67755	1.1536	0.00070988	-0.50033	-0.00030788	0.6533	0.000402	615.345951633073	9.1681	0.062064	9.1681	9.1415	9.2036	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	384.371188550568	0	7.37747303530455						123	8	2	NaN	NaN	NaN	0.0074574	1	10276	53.517	42.157	1	54395			1270	3136	1069	1093	1270	1270		
ANVVALVAVAEHSGEFEK	18	Unmodified	_ANVVALVAVAEHSGEFEK_			0	0	0	Q17R31	Q17R31	Q17R31	TATDN3	Putative deoxyribonuclease TATDN3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.48889	1868.96323	0.96366	0.0009015	-1.0695	-0.0010005	-0.1058	-9.8974E-05	935.989005265711	14.302	0.062069	14.302	14.285	14.347	0	117	22	1.24546401832526	0.0138810103523233	1.24546401832526	502.526214329036	0	5.60078129980423						117	8	3	NaN	NaN	NaN	5.3735E-07	1	28914	106.97	100.22	1	21825			1271	1916	1070	1094	1271	1271		
ANYAVDAYFR	10	Unmodified	_ANYAVDAYFR_			0	0	0	O60264;P28370	O60264	O60264	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.285463	1188.55637	1.1358	0.0006761	2.5337	0.0015083	3.6695	0.0021844	595.286616832519	10.427	0.09752	10.427	10.374	10.472	0	582	31	0.934820374997243	0.0202566836468107	0.934820374997243	378.772716378837	0	8.20765068342877						181	12	3	NaN	NaN	NaN	0.00096955	1	9113	69.716	61.533	1	62709			1272	251	1071	1095	1272	1272		
ANYQADLANITCEIAIK	17	Unmodified	_ANYQADLANITCEIAIK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.480208	1906.94586	1.4721	0.0014051	1.3356	0.0012748	2.8078	0.00268	954.984134946426	15.854	0.15077	15.854	15.783	15.934	-1.7764E-15	240	109	1.16393748060522	0.071697360550536	1.16393748060522	469.562533107308	0	28.9245726666624						928	18	4	NaN	NaN	NaN	0.00019374	1	29745	85.081	82.366	1	186260			1273	2140	1072	1096	1273	1273		
APAFLYDIYLR	11	Unmodified	_APAFLYDIYLR_			0	0	0	Q8WVX9	Q8WVX9	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.363713	1340.71287	0.43579	0.00029257	2.4572	0.0016497	2.893	0.0019422	671.364829546994	16.599	0.097522	16.599	16.564	16.661	0	453	28	1.02166545906632	0.0181266605748145	1.02166545906632	413.421271316044	0	7.33503026166983						186	12	3	NaN	NaN	NaN	0.012332	1	13631	43.272	38.744	1	36429			1274	2383	1073	1097	1274	1274		
APAGPSLEETSVSSPK	16	Unmodified	_APAGPSLEETSVSSPK_			0	0	0	Q6AI08	Q6AI08	Q6AI08	HEATR6	HEAT repeat-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.89376	1555.77297	2.4152	0.0018812	-1.4861	-0.0011575	0.92912	0.00072369	778.892661329375	6.6225	0.097543	6.6225	6.5781	6.6757	0	333	22	1.10198982404297	0.0140190090961851	1.10198982404297	445.295377293607	0	5.66484354806971						121	12	2	NaN	NaN	NaN	0.0019365	1	20231	65.173	62.294	1	26644			1275	2027	1074	1098	1275	1275		
APAMFNIR	8	Unmodified	_APAMFNIR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.244555	918.474557	-1.3788	-0.0006346	-0.73543	-0.00033848	-2.1142	-0.00097307	460.244571416865	9.3189	0.23945	9.3189	9.2391	9.4785	0	744	37	0.82502364452135	0.024497688241599	0.82502364452135	335.41052694405	0	9.95945095221231						506	28	3	NaN	NaN	NaN	0.00077188	1	2671	84.064	70.511	1	187760			1276	1338	1075	1099	1276	1276		
APAPEAEDEEVAR	13	Unmodified	_APAPEAEDEEVAR_			0	0	0	Q8NBN7	Q8NBN7	Q8NBN7	RDH13	Retinol dehydrogenase 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.32297	1382.63139	2.2973	0.0015905	-1.285	-0.00088966	1.0123	0.00070082	692.321938761646	4.1751	0.13301	4.1751	4.1307	4.2637	0	483	52	1.00151498427745	0.0342818598335937	1.00151498427745	405.141923247391	0	13.8680088101726						368	16	3	NaN	NaN	NaN	0.0068631	1	14901	47.361	40.614	1	69974			1277	2292	1076	1100	1277	1277		
APAVAVAPTPVQPPIIVAPVATVPAMPQEK	30	Unmodified	_APAVAVAPTPVQPPIIVAPVATVPAMPQEK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	987.227822	2958.66164	1.2109	0.0011954	0.16499	0.00016288	1.3759	0.0013583	987.562719580365	17.477	0.11527	17.477	17.397	17.513	0	300	28	1.12400150285141	0.0179946865546097	1.12400150285141	678.426467030424	0	10.8612591652179						178	14	4	NaN	NaN	NaN	0.022567	1	38156	17.05	16.971	1	29714			1278	3158	1077	1101	1278	1278		
APAVQDLLTR	10	Unmodified	_APAVQDLLTR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.31148	1082.60841	0.21985	0.00011923	0.40425	0.00021923	0.62411	0.00033846	542.31171526101	10.206	0.10642	10.206	10.161	10.268	0	651	28	0.888155670855968	0.0182879696480781	0.888155670855968	360.268832640311	0	7.41827777795385						172	13	2	NaN	NaN	NaN	0.00094812	1	6282	85.716	55.123	1	53613			1279	3048	1078	1102	1279	1279		
APDELHYTYLDTFGRPVIVAYK	22	Unmodified	_APDELHYTYLDTFGRPVIVAYK_			0	0	1	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	642.833783	2567.30603	1.2075	0.0007762	-0.68583	-0.00044088	0.52163	0.00033532	643.084532993316	14.205	0.20394	14.205	14.107	14.311	0	540	64	0.963152256458504	0.0424831283312966	0.963152256458504	775.672212741704	0	34.2136790273371						853	24	6	NaN	NaN	NaN	4.7707E-08	1	37104	119.58	118.33	1	325290			1280	518	1079	1103	1280	1280		
APDELHYTYLDTFGRPVIVAYK	22	Unmodified	_APDELHYTYLDTFGRPVIVAYK_			0	0	1	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.775951	2567.30603	1.8585	0.0015923	-0.065627	-5.6228E-05	1.7929	0.0015361	857.110339152577	14.196	0.097546	14.196	14.161	14.258	0	432	106	1.035754240522	0.070502402926835	1.035754240522	625.607845548862	0	42.5842875418459						1128	12	5	NaN	NaN	NaN	3.1508E-06	1	37105	70.638	70.229	1	369490			1281	518	1079	1103	1281	1281		
APDFLPLLNK	10	Unmodified	_APDFLPLLNK_			0	0	0	O75695	O75695	O75695	RP2	Protein XRP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.326599	1126.63865	-0.030675	-1.7311E-05	-1.7809	-0.001005	-1.8115	-0.0010223	564.325563587019	15.704	0.266	15.704	15.588	15.854	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	361.739451446697	0	8.2367681129175						602	31	3	NaN	NaN	NaN	0.0023353	1	7442	54.436	51.091	1	222670			1282	353	1080	1104	1282	1282		
APDFVFYAPR	10	Unmodified	_APDFVFYAPR_			0	0	0	P35241;P15311;P26038	P35241;P15311;P26038	P15311	RDX;EZR;MSN	Radixin;Ezrin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.800749	1181.58694	1.5176	0.00089812	-0.40218	-0.00023801	1.1154	0.00066011	591.800568209435	12.99	0.40792	12.99	12.866	13.274	0	576	61	0.938871150116794	0.0405189944749071	0.938871150116794	380.43977804258	0	16.4186930897009						1867	47	5	NaN	NaN	NaN	5.3796E-05	1	8916	106.93	72.145	1	1586700			1283	710;846;962	1081	1105	1283	1283		
APDLEYLFEK	10	Unmodified	_APDLEYLFEK_			0	0	0	Q9NX18	Q9NX18	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.810979	1223.6074	-0.32183	-0.00019722	8.5793	0.0052575	8.2575	0.0050603	612.815437471611	14.834	0.1951	14.834	14.746	14.941	0	564	64	0.946969335010767	0.0425184363686346	0.946969335010767	383.569086374367	0	17.2220548110973						407	23	3	NaN	NaN	NaN	0.00498	1	10117	55.235	46.258	1	100830			1284	3091	1082	1106	1284	1284		
APDMSSSEEFPSFGAQVAPK	20	Unmodified	_APDMSSSEEFPSFGAQVAPK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.47786	2080.94117	2.4589	0.0025609	-0.31248	-0.00032545	2.1464	0.0022355	1041.97924548653	12.795	0.1774	12.795	12.733	12.91	0	207	67	1.18585551256002	0.0437969629852113	1.18585551256002	478.115775056519	0	17.6581536966429						1065	21	4	NaN	NaN	NaN	7.2342E-08	1	33040	80.379	79.285	1	264440			1285	1498	1083	1107	1285	1285		
APDVEGQGLDWSLK	14	Unmodified	_APDVEGQGLDWSLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.877913	1513.74127	1.2186	0.00092356	1.2141	0.00092017	2.4327	0.0018437	757.879029015878	12.538	0.16848	12.538	12.485	12.653	0	471	58	1.00957851518677	0.0382621221604766	1.00957851518677	408.053432754263	0	15.4648598966639						542	20	4	NaN	NaN	NaN	0.00030452	1	18924	62.454	58.208	1	190690			1286	1584	1084	1108	1286	1286		
APDWVDAEECHR	12	Unmodified	_APDWVDAEECHR_			0	0	0	O14964	O14964	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.545619	1483.61503	-1.8067	-0.00089529	1.9138	0.00094836	0.10709	5.3068E-05	495.546374711245	6.3121	0.079823	6.3121	6.2855	6.3653	0	777	16	0.802556497112065	0.0102208668462794	0.802556497112065	486.654758246933	0	6.19773623669977						67	10	2	NaN	NaN	NaN	0.041444	1	18011	27.589	18.075	1	12121			1287	129	1085	1109	1287	1287		
APEAWDYGQGFVNEEMIR	18	Unmodified	_APEAWDYGQGFVNEEMIR_			0	0	0	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1056.4782	2110.94184	1.9706	0.0020819	0.16932	0.00017889	2.1399	0.0022608	1056.97919084573	15.384	0.17744	15.384	15.331	15.508	0	186	46	1.1997861197946	0.0298390153919159	1.1997861197946	483.686771399995	0	12.0294248937813						653	21	4	NaN	NaN	NaN	0.0026085	1	33474	46.768	46.149	1	151100			1288	474	1086	1110	1288	1288		
APEEPNIQVNPLGIPVNSK	19	Unmodified	_APEEPNIQVNPLGIPVNSK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.54165	2015.06875	2.2213	0.0022403	-0.58601	-0.00059101	1.6353	0.0016493	1009.04266311754	13.824	0.22164	13.824	13.735	13.957	0	204	64	1.18784641916898	0.0418148026585834	1.18784641916898	479.022238361408	0	16.8626348010278						883	26	4	NaN	NaN	NaN	0.012036	1	31901	49.485	36.904	1	215960			1289	1061	1087	1111	1289	1289		
APEILLGCK	9	Unmodified	_APEILLGCK_			0	0	0	P24941	P24941	P24941	CDK2	Cyclin-dependent kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.778428	999.542302	-0.2935	-0.00014698	-3.5315	-0.0017685	-3.825	-0.0019155	500.777090884683	8.5116	0.22167	8.5116	8.4318	8.6534	0	717	49	0.84338031290707	0.0326000897704161	0.84338031290707	342.463305047441	0	13.2376038624109						454	26	4	NaN	NaN	NaN	0.010244	1	4277	60.589	52.407	1	123880			1290	834	1088	1112	1290	1290		
APELLLGAK	9	Unmodified	_APELLLGAK_			0	0	0	P21127;Q9UQ88	P21127	P21127	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.28166	910.548768	-0.91596	-0.00041794	-0.033066	-1.5088E-05	-0.94903	-0.00043303	456.281689354203	9.106	0.13301	9.106	9.0617	9.1947	0	738	28	0.829104889055312	0.0183617725733707	0.829104889055312	337.112967747667	0	7.46587280696133						150	16	2	NaN	NaN	NaN	0.013746	1	2521	47.349	41.119	1	36078			1291	787	1089	1113	1291	1291		
APEQEQAAPGPAAGGEAPK	19	Unmodified	_APEQEQAAPGPAAGGEAPK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.431572	1774.84859	4.9205	0.0043716	-3.8009	-0.0033769	1.1196	0.00099469	888.428108802937	3.8914	0.35469	3.8914	3.8292	4.1839	0	309	193	1.11800162319566	0.128377677962256	1.11800162319566	451.273240808732	0	51.8187179513496						3268	41	5	NaN	NaN	NaN	9.2858E-20	1	26539	222.25	209.67	1	1484600			1292	1468	1090	1114	1292	1292		
APEQEQAAPGPAAGGEAPK	19	Unmodified	_APEQEQAAPGPAAGGEAPK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.623474	1774.84859	3.0329	0.0017974	0.57692	0.0003419	3.6099	0.0021393	592.623108925233	3.8914	0.16848	3.8914	3.847	4.0154	0	576	40	0.938871150116794	0.0263282200540531	0.938871150116794	568.45026951318	0	15.9407217738739						365	20	4	NaN	NaN	NaN	0.00095323	1	26540	62.494	52.243	1	107870			1293	1468	1090	1114	1293	1293		
APESLFLLEEMR	12	Unmodified	_APESLFLLEEMR_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.868502	1433.72245	0.78374	0.00056262	0.095985	6.8904E-05	0.87972	0.00063153	717.868638392431	16.431	0.14187	16.431	16.386	16.528	0	441	46	1.02971785871157	0.0301860841315895	1.02971785871157	416.403801522387	0	12.2068390667674						394	17	4	NaN	NaN	NaN	0.0029441	1	16501	73.655	70.984	1	118520			1294	1611	1091	1115	1294	1294		
APEVSQYIYQVYDSILK	17	Unmodified	_APEVSQYIYQVYDSILK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.51986	2015.02516	0.96068	0.00096887	-0.61086	-0.00061607	0.34982	0.0003528	1009.02071725227	19.96	0.053212	19.96	19.942	19.995	0	174	43	1.20774045859593	0.0278363710639469	1.20774045859593	487.044969989603	0	11.225561264397						196	7	5	NaN	NaN	NaN	1.8398E-06	1	31900	77.696	66.017	1	64410			1295	1423	1092	1116	1295	1295		
APFAAHGYGAFLTLSILDR	19	Unmodified	_APFAAHGYGAFLTLSILDR_			0	0	0	P49721	P49721	P49721	PSMB2	Proteasome subunit beta type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.026542	2019.0578	-0.2523	-0.00017006	-0.25891	-0.00017451	-0.51121	-0.00034457	674.36121729767	17.805	0.079803	17.805	17.77	17.849	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	537.240054543098	0	9.83382283055062						188	10	4	NaN	NaN	NaN	0.0010932	1	31971	68.108	65.719	1	39081			1296	1143	1093	1117	1296	1296		
APFDLFENK	9	Unmodified	_APFDLFENK_			0	0	0	P08238;Q58FF7	P08238	P08238	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.771657	1079.52876	0.54065	0.00029237	-0.86907	-0.00046997	-0.32842	-0.0001776	540.771377732685	13.247	0.24834	13.247	13.159	13.407	0	666	64	0.877991458330206	0.0427134196755701	0.877991458330206	356.158623475938	0	17.3267662358962						804	29	5	NaN	NaN	NaN	2.4059E-08	1	6195	146.03	116.93	1	2168000			1297	579	1094	1118	1297	1297		
APFDLFENR	9	Unmodified	_APFDLFENR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.774731	1107.53491	1.1036	0.00061222	-0.68871	-0.00038208	0.41484	0.00023015	554.774465303119	13.558	0.22166	13.558	13.487	13.708	0	642	79	0.894250814548268	0.0527989812549791	0.894250814548268	362.638651628991	0	21.4111645840234						740	26	2	NaN	NaN	NaN	0.001029	1	6913	91.783	74.387	1	1168900			1298	567	1095	1119	1298	1298		
APGAEEDDSELQR	13	Unmodified	_APGAEEDDSELQR_			0	0	0	Q53F19	Q53F19	Q53F19	C17orf85	Uncharacterized protein C17orf85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.81551	1415.61647	3.1424	0.0022274	-2.4607	-0.0017442	0.68175	0.00048324	708.813501361679	3.8914	0.11527	3.8914	3.8558	3.9711	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	400.969438390145	0	6.52867423429814						179	14	3	NaN	NaN	NaN	0.0035228	1	15946	54.27	45.293	1	34318			1299	1947	1096	1120	1299	1299		
APGAIGPYSQAVLVDR	16	Unmodified	_APGAIGPYSQAVLVDR_			0	0	0	P52758	P52758	P52758	HRSP12	Ribonuclease UK114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.435929	1612.85731	2.6644	0.0021514	-3.1583	-0.0025501	-0.49382	-0.00039873	807.433850207025	11.287	0.15964	11.287	11.216	11.376	0	360	40	1.08395544855938	0.0260640179471912	1.08395544855938	437.871220511465	0	10.528738395233						516	19	4	NaN	NaN	NaN	0.002547	1	21984	44.045	36.08	1	155600			1300	1221	1097	1121	1300	1300		
APGFAHLAGLDK	12	Unmodified	_APGFAHLAGLDK_			0	0	0	O75306	O75306	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.552262	1195.63496	-2.2276	-0.00089005	1.281	0.00051182	-0.94665	-0.00037823	399.552983174122	8.9287	0.11543	8.9287	8.8842	8.9996	0	843	22	0.757518876820989	0.0143531208129216	0.757518876820989	460.364225072276	0	8.72277053759922						174	14	3	NaN	NaN	NaN	0.063635	1	9318	26.579	15.877	1	50958			1301	316	1098	1122	1301	1301		
APGFAHLAGLDK	12	Unmodified	_APGFAHLAGLDK_			0	0	0	O75306	O75306	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.824755	1195.63496	0.84647	0.00050689	2.38	0.0014252	3.2264	0.0019321	598.824626154814	8.9287	0.17749	8.9287	8.8576	9.0351	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	382.849109570606	0	7.38178144812753						241	21	3	NaN	NaN	NaN	0.0060769	1	9320	50.09	37.494	1	73371			1302	316	1098	1122	1302	1302		
APGFAQMLK	9	Unmodified	_APGFAQMLK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.760038	961.505523	0.23737	0.00011436	-1.2843	-0.00061873	-1.0469	-0.00050438	481.759762182335	10.099	0.36353	10.099	9.9484	10.312	0	729	88	0.835224628594324	0.0591000196367455	0.835224628594324	339.333690751106	0	24.0110589417741						1374	42	5	NaN	NaN	NaN	0.0039318	1	3473	58.286	39.883	1	726950			1303	1174	1099	1123	1303	1303		
APGFGDNR	8	Unmodified	_APGFGDNR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	417.198659	832.382765	-0.35763	-0.0001492	0.87129	0.0003635	0.51366	0.0002143	417.198968520894	2.9336	0.53201	2.9336	2.8538	3.3858	0	807	34	0.782101955086014	0.0225203682551777	0.782101955086014	318.444947306547	0	9.16951739566406						750	61	3	NaN	NaN	NaN	0.026266	1	1340	47.349	33.797	1	226160			1304	635	1100	1124	1304	1304		
APGIILLDEATSALDTSNER	20	Unmodified	_APGIILLDEATSALDTSNER_			0	0	0	Q9NP58	Q9NP58	Q9NP58	ABCB6	ATP-binding cassette sub-family B member 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.53677	2085.05898	0.50037	0.00052216	0.27378	0.0002857	0.77415	0.00080786	1044.03828538599	18.257	0.11531	18.257	18.186	18.302	0	150	31	1.22363604450103	0.0198585839461511	1.22363604450103	493.341750629698	0	8.00652172110222						258	14	4	NaN	NaN	NaN	0.0017441	1	33103	29.217	27.116	1	50217			1305	2975	1101	1125	1305	1305		
APGLGLVLER	10	Unmodified	_APGLGLVLER_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.811116	1023.60768	-0.74137	-0.00038018	-0.28103	-0.00014412	-1.0224	-0.0005243	512.810952990756	11.908	0.12416	11.908	11.846	11.97	0	663	43	0.880024865079826	0.0284657258071274	0.880024865079826	357.229100904028	0	11.5551117248696						267	15	3	NaN	NaN	NaN	0.0067053	1	4841	37.591	22.093	1	92855			1306	3447	1102	1126	1306	1306		
APGSAGHYELPWVEK	15	Unmodified	_APGSAGHYELPWVEK_			0	0	0	P35250	P35250	P35250	RFC2	Replication factor C subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.607095	1639.79946	-0.052988	-2.9017E-05	-1.0894	-0.00059656	-1.1424	-0.00062557	547.606428205416	10.605	0.23946	10.605	10.48	10.72	0	696	46	0.857641857947968	0.030556215070185	0.857641857947968	519.600053018199	0	18.5124021447504						549	28	3	NaN	NaN	NaN	0.028639	1	22750	33.751	21.733	1	131150			1307	965	1103	1127	1307	1307		
APGSVVELLGK	11	Unmodified	_APGSVVELLGK_			0	0	0	O95363	O95363	O95363	FARS2	Phenylalanine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.316232	1068.61791	-0.091003	-4.8715E-05	-2.6541	-0.0014208	-2.7451	-0.0014695	535.315225622604	11.562	0.15081	11.562	11.483	11.633	0	666	49	0.877991458330206	0.0325232324981577	0.877991458330206	356.204447925284	0	13.1947981575864						254	18	2	NaN	NaN	NaN	0.036609	1	5933	40.386	35.078	1	66794			1308	426	1104	1128	1308	1308		
APHDFQFVQK	10	Unmodified	_APHDFQFVQK_			0	0	0	Q86TI2	Q86TI2	Q86TI2	DPP9	Dipeptidyl peptidase 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	406.208495	1215.60366	-1.0538	-0.00042808	-0.88892	-0.00036109	-1.9428	-0.00078917	406.208138000359	5.9751	0.079838	5.9751	5.9485	6.0283	0	891	19	0.724677416575734	0.0123292940485275	0.724677416575734	440.323203072733	0	7.49143566902615						80	10	2	NaN	NaN	NaN	0.050139	1	9884	21.275	16.735	1	15961			1309	2158	1105	1129	1309	1309		
APHLQLIEGK	10	Unmodified	_APHLQLIEGK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	369.216991	1104.62914	-1.2214	-0.00045096	-0.38156	-0.00014088	-1.603	-0.00059184	369.216692544884	6.7644	0.070938	6.7644	6.7466	6.8175	0	855	19	0.749315378969369	0.0123069623830652	0.749315378969369	455.805766876214	0	7.48627958850295						83	9	2	NaN	NaN	NaN	0.045321	1	6851	43.734	30.086	1	19762			1310	206	1106	1130	1310	1310		
APHLQLIEGK	10	Unmodified	_APHLQLIEGK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.321848	1104.62914	1.0309	0.00057039	0.45787	0.00025335	1.4887	0.00082374	553.322093316563	6.7732	0.10638	6.7732	6.7377	6.8441	0	615	52	0.912521036363781	0.0344769526882287	0.912521036363781	370.059592515387	0	13.9816251401923						276	13	2	NaN	NaN	NaN	4.7166E-05	1	6852	92.732	71.644	1	68845			1311	206	1106	1130	1311	1311		
APIDTPTQQLIQDIK	15	Unmodified	_APIDTPTQQLIQDIK_			0	0	0	Q9HD67	Q9HD67	Q9HD67	MYO10	Unconventional myosin-X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.961977	1679.9094	2.4092	0.002026	-1.4874	-0.0012508	0.92181	0.0007752	840.959046923438	13.903	0.15075	13.903	13.797	13.948	0	288	25	1.13199748998575	0.0159875748490237	1.13199748998575	457.122675810827	0	6.45609469929445						291	18	4	NaN	NaN	NaN	0.005103	1	23921	55.604	41.826	1	60445			1312	2972	1107	1131	1312	1312		
APIIAVTR	8	Unmodified	_APIIAVTR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.76872	839.522887	-1.1807	-0.00049679	1.2179	0.00051245	0.037219	1.5661E-05	420.769286058877	6.5249	0.42563	6.5249	6.4096	6.8353	0	789	55	0.794378096728713	0.0368079377727304	0.794378096728713	323.398793056774	0	14.9848575881304						981	49	4	NaN	NaN	NaN	0.0025753	1	1431	97.033	76.685	1	1302400			1313	699	1108	1132	1313	1313		
APIICVLGHVDTGK	14	Unmodified	_APIICVLGHVDTGK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.937788	1478.79153	-0.24955	-0.00012326	-2.2021	-0.0010877	-2.4517	-0.001211	494.270417202438	11.048	0.23942	11.048	10.942	11.181	0	735	64	0.831145085810763	0.0428143894900598	0.831145085810763	504.005516208499	0	25.962601288847						557	28	3	NaN	NaN	NaN	0.0030537	1	17876	51.454	51.003	1	136450			1314	288	1109	1133	1314	1314		
APILIATDVASR	12	Unmodified	_APILIATDVASR_			0	0	0	P17844;Q92841	P17844;Q92841	Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.858795	1225.70304	1.7593	0.0010799	1.2307	0.00075547	2.9899	0.0018354	613.859858286161	10.516	0.23059	10.516	10.454	10.684	0	513	61	0.981336640919867	0.0403901990048783	0.981336640919867	397.481984963257	0	16.3597034942783						856	27	5	NaN	NaN	NaN	1.1634E-07	1	10181	167.06	159.42	1	581920			1315	2435;743	1110	1134	1315	1315		
APIQDIWYHEDR	12	Unmodified	_APIQDIWYHEDR_			0	0	0	Q9Y3D9	Q9Y3D9	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.91604	1541.72629	0.19624	0.00010105	0.63594	0.00032746	0.83218	0.0004285	514.916531676084	9.9218	0.16846	9.9218	9.8598	10.028	0	702	31	0.853568545818287	0.0203693921717962	0.853568545818287	517.407397220852	0	12.3473085298337						408	20	4	NaN	NaN	NaN	0.00080369	1	19769	44.598	43.095	1	147470			1316	3391	1111	1135	1316	1316		
APIQTYVLGANNQETVK	17	Unmodified	_APIQTYVLGANNQETVK_			0	0	0	Q69YN2	Q69YN2	Q69YN2	CWF19L1	CWF19-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.48889	1844.96323	2.4756	0.0022862	-2.0761	-0.0019173	0.3995	0.00036893	923.988020460272	10.143	0.079803	10.143	10.108	10.188	0	267	28	1.14597988355104	0.0179724190816779	1.14597988355104	462.430163094906	0	7.25229893337837						162	10	3	NaN	NaN	NaN	0.00018589	1	28364	65.212	57.637	1	32818			1317	2026	1112	1136	1317	1317		
APIVTVGVNNDPADVR	16	Unmodified	_APIVTVGVNNDPADVR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.936293	1635.85803	2.2987	0.0018825	-1.8494	-0.0015145	0.4493	0.00036795	819.436308477575	9.647	0.12413	9.647	9.6026	9.7268	0	321	43	1.10999792833052	0.0280245115446394	1.10999792833052	448.337565809437	0	11.319337602566						190	15	3	NaN	NaN	NaN	0.0039711	1	22674	72.327	70.485	1	73488			1318	2687	1113	1137	1318	1318		
APKPEDIDEEDDDVPDLVENFDEASK	26	Unmodified	_APKPEDIDEEDDDVPDLVENFDEASK_			0	0	1	Q96K17	Q96K17	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	977.768244	2930.2829	1.4237	0.001392	-0.50294	-0.00049176	0.92074	0.00090027	978.102194580689	14.639	0.14187	14.639	14.56	14.701	0	465	76	1.01360860968299	0.0503796986704133	1.01360860968299	611.823094858673	0	30.4096303682935						995	17	5	NaN	NaN	NaN	0.00093962	1	38119	42.888	40.824	1	223840			1319	2571	1114	1138	1319	1319		
APLATGEDDDDEVPDLVENFDEASK	25	Unmodified	_APLATGEDDDDEVPDLVENFDEASK_			0	0	0	P20290	P20290	P20290	BTF3	Transcription factor BTF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1346.09322	2690.1719	1.1349	0.0015277	-0.64768	-0.00087183	0.48721	0.00065583	1346.59426440873	16.147	0.15074	16.147	16.076	16.227	0	63	43	1.28111162701928	0.0277069358040583	1.28111162701928	515.745191381494	0	11.1541559747656						552	18	4	NaN	NaN	NaN	0.011801	1	37575	38.616	37.969	1	106310			1320	778	1115	1139	1320	1320		
APLATGEDDDDEVPDLVENFDEASK	25	Unmodified	_APLATGEDDDDEVPDLVENFDEASK_			0	0	0	P20290	P20290	P20290	BTF3	Transcription factor BTF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	897.731242	2690.1719	1.7175	0.0015418	0.63002	0.00056558	2.3475	0.0021074	898.066128112519	16.165	0.15077	16.165	16.085	16.236	0	384	151	1.06790610341098	0.100419413143748	1.06790610341098	644.869301505117	0	60.6395979990394						1725	18	4	NaN	NaN	NaN	1.4097E-09	1	37576	96.453	94.931	1	364040			1321	778	1115	1139	1321	1321		
APLDIPIPDPPPKDDEMETDK	21	Unmodified	_APLDIPIPDPPPKDDEMETDK_			0	0	1	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.378758	2332.11444	0.84183	0.00065526	-0.70759	-0.00055077	0.13424	0.00010449	778.712531944462	12.618	0.36357	12.618	12.485	12.848	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	566.173184748392	0	13.4651779434892						663	42	4	NaN	NaN	NaN	5.7863E-05	1	35914	50.519	48.548	1	145960			1322	3274	1116	1140	1322	1322		
APLDIPVPDPVK	12	Unmodified	_APLDIPVPDPVK_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.863546	1259.71254	0.90995	0.00057405	-1.7358	-0.0010951	-0.82587	-0.00052101	631.363942987354	13.691	0.30147	13.691	13.567	13.868	0	543	61	0.961130371139249	0.0404461214700302	0.961130371139249	389.180558079372	0	16.37742870116						499	35	3	NaN	NaN	NaN	4.5448E-05	1	11214	85.821	77.347	1	170320			1323	1560	1117	1141	1323	1323		
APLNIPGTPVLEDFPQNDDEK	21	Unmodified	_APLNIPGTPVLEDFPQNDDEK_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.06843	2308.12231	0.35752	0.00041296	-0.39741	-0.00045904	-0.03989	-4.6076E-05	1155.56957067507	15.792	0.18624	15.792	15.704	15.89	0	81	58	1.2692388538616	0.0376203035311353	1.2692388538616	511.400428146854	0	15.1579344378746						697	22	3	NaN	NaN	NaN	0.02133	1	35702	15.141	14.046	1	151840			1324	1786	1118	1142	1324	1324		
APLNVQFNSPLPGDAVK	17	Unmodified	_APLNVQFNSPLPGDAVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.975419	1765.93628	2.9539	0.0026112	-0.74199	-0.0006559	2.2119	0.0019552	884.476007168028	13.54	0.27488	13.54	13.407	13.682	0	231	91	1.16991841121525	0.0598710607414343	1.16991841121525	472.247537928298	0	24.1674639506941						1706	32	5	NaN	NaN	NaN	1.2402E-07	1	26302	135.21	126.83	1	659340			1325	326	1119	1143	1325	1325		
APLNVTNTAGTSLPSVDLLQK	21	Unmodified	_APLNVTNTAGTSLPSVDLLQK_			0	0	0	Q9NPI6	Q9NPI6	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.08643	2138.1583	0.77026	0.00082424	-5.1253	-0.0054845	-4.355	-0.0046602	1070.58287478186	15.012	0.053216	15.012	14.976	15.03	0	111	31	1.24942920585258	0.0198205070176776	1.24942920585258	503.658200909632	0	7.98985717548385						143	7	3	NaN	NaN	NaN	0.031854	1	33856	26.929	21.026	1	52178			1326	2990	1120	1144	1326	1326		
APLPDLYPFGTMR	13	Unmodified	_APLPDLYPFGTMR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.379037	1476.74352	0.7614	0.00056297	0.1385	0.0001024	0.8999	0.00066537	739.379920741589	16.209	0.31921	16.209	16.058	16.377	0	453	49	1.02166545906632	0.0322140561522897	1.02166545906632	413.032489267282	0	13.0232961131287						948	37	4	NaN	NaN	NaN	0.0050787	1	17799	51.454	46.625	1	255860			1327	2435	1121	1145	1327	1327		
APLPLGHIK	9	Unmodified	_APLPLGHIK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.297645	944.580737	0.22818	0.000108	-0.22182	-0.00010499	0.0063623	3.0112E-06	473.297459055849	6.1081	0.20395	6.1081	6.0461	6.25	0	747	76	0.822982596624503	0.0509695226178332	0.822982596624503	334.444452824323	0	20.713043231479						597	24	3	NaN	NaN	NaN	0.061086	1	3161	29.102	18.273	1	188100			1328	614	1122	1146	1328	1328		
APLQGDHNHLFIR	13	Unmodified	_APLQGDHNHLFIR_			0	0	0	Q8WVC0	Q8WVC0	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.603908	1516.78989	0.16355	8.2856E-05	1.4366	0.00072777	1.6001	0.00081062	506.604703124191	6.3653	0.13297	6.3653	6.321	6.454	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	523.655404756492	0	13.5755369510665						235	16	3	NaN	NaN	NaN	0.022989	1	19040	35.33	30.802	1	67246			1329	2378	1123	1147	1329	1329		
APLVCLPVFVSR	12	Unmodified	_APLVCLPVFVSR_			0	0	0	Q9H0W9	Q9H0W9	Q9H0W9	C11orf54	Ester hydrolase C11orf54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.386665	1356.75878	0.44111	0.00029969	-1.5407	-0.0010467	-1.0996	-0.00074706	679.385883086548	16.484	0.13301	16.484	16.404	16.537	0	519	40	0.97729762293174	0.026255437790293	0.97729762293174	395.419930111057	0	10.6230928352498						430	16	4	NaN	NaN	NaN	0.00066453	1	14110	78.932	74.025	1	135800			1330	2852	1124	1148	1330	1330		
APLYDLAAHEDK	12	Unmodified	_APLYDLAAHEDK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	448.226103	1341.65648	-0.36585	-0.00016398	0.31329	0.00014042	-0.052558	-2.3558E-05	448.226291036811	7.2964	0.15961	7.2964	7.2255	7.3851	0	765	34	0.810730346695089	0.0224765256052036	0.810730346695089	492.090937444098	0	13.6426305005587						385	19	4	NaN	NaN	NaN	0.035639	1	13661	43.168	41.198	1	120780			1331	2823	1125	1149	1331	1331		
APLYDLAAHEDK	12	Unmodified	_APLYDLAAHEDK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.835517	1341.65648	1.9423	0.0013049	0.77495	0.00052064	2.7172	0.0018255	671.835947137352	7.3053	0.17732	7.3053	7.2255	7.4028	0	471	46	1.00957851518677	0.0302319815976242	1.00957851518677	408.527313516634	0	12.2334122988709						364	21	3	NaN	NaN	NaN	0.00050188	1	13662	94.66	75.336	1	88807			1332	2823	1125	1149	1332	1332		
APMVNPTLGVHEADLLK	17	Unmodified	_APMVNPTLGVHEADLLK_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.325711	1803.9553	0.43084	0.00025951	0.7386	0.00044488	1.1694	0.00070439	602.32639725939	12.201	0.13305	12.201	12.148	12.281	0	564	34	0.946969335010767	0.0222623031474618	0.946969335010767	573.281770674219	0	13.4772817828552						353	16	4	NaN	NaN	NaN	0.016584	1	27338	30.862	22.897	1	118650			1333	1664	1126	1150	1333	1333		
APNISMPDVDLNLK	14	Unmodified	_APNISMPDVDLNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.897791	1525.78103	1.9648	0.0015009	-1.9625	-0.0014992	0.0022743	1.7373E-06	763.897160352334	14.462	0.27486	14.462	14.365	14.639	0	408	49	1.0518390438467	0.0321562992894993	1.0518390438467	425.103990474621	0	12.996067437153						566	32	3	NaN	NaN	NaN	0.00013948	1	19297	50.116	37.52	1	221340			1334	1584	1127	1151	1334	1334		
APNTPDILEIEFK	13	Unmodified	_APNTPDILEIEFK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.893032	1485.77151	1.8617	0.0013849	1.1821	0.00087938	3.0438	0.0022643	743.893945407163	15.429	0.40799	15.429	15.278	15.686	0	432	76	1.035754240522	0.0502685125885778	1.035754240522	418.704589039927	0	20.321091704574						2074	47	5	NaN	NaN	NaN	4.4689E-08	1	18101	163.59	139.75	1	3007400			1335	488	1128	1152	1335	1335		
APNYSCVMTGSWDK	14	Unmodified	_APNYSCVMTGSWDK_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.347608	1614.68066	2.3407	0.0018921	-0.24685	-0.00019954	2.0938	0.0016925	808.348007842958	10.667	0.14185	10.667	10.613	10.755	0	414	40	1.04781950764076	0.0261323987291064	1.04781950764076	423.269779393383	0	10.5562595126651						433	17	5	NaN	NaN	NaN	0.00033225	1	22024	54.199	35.388	1	117230			1336	1462	1129	1153	1336	1336		
APPDGWELIEPTLDELDQK	19	Unmodified	_APPDGWELIEPTLDELDQK_			0	0	0	P41223	P41223	P41223	BUD31	Protein BUD31 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.691553	2165.05283	-0.7946	-0.00057425	0.60043	0.00043392	-0.19417	-0.00014032	723.0261979347	18.976	0.079799	18.976	18.949	19.029	0	660	16	0.882057989648486	0.0101656231369728	0.882057989648486	533.306071836832	0	6.14629492230222						94	10	3	NaN	NaN	NaN	0.0033749	1	34248	44.045	30.267	1	17027			1337	1031	1130	1154	1337	1337		
APPDGWELIEPTLDELDQK	19	Unmodified	_APPDGWELIEPTLDELDQK_			0	0	0	P41223	P41223	P41223	BUD31	Protein BUD31 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1083.53369	2165.05283	0.8011	0.00086802	-0.32853	-0.00035598	0.47257	0.00051205	1084.03457354101	18.993	0.12412	18.993	18.922	19.046	0	138	55	1.23157729878518	0.0357356572157275	1.23157729878518	496.422087233142	0	14.4042680562383						498	15	4	NaN	NaN	NaN	0.045012	1	34249	40.83	34.625	1	92308			1338	1031	1130	1154	1338	1338		
APPLVENEEAEPGR	14	Unmodified	_APPLVENEEAEPGR_			0	0	0	O14908	O14908	O14908	GIPC1	PDZ domain-containing protein GIPC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.372995	1506.73144	2.058	0.0015525	-7.0138	-0.0052911	-4.9558	-0.0037385	754.867467412011	6.1968	0.16851	6.1968	6.1259	6.2944	0	468	70	1.01159370163332	0.0463301120390063	1.01159370163332	408.885200734758	0	18.7265867022959						606	20	3	NaN	NaN	NaN	1.3587E-07	1	18697	84.999	55.69	1	149800			1339	124	1131	1155	1339	1339		
APPNATLEHFYLTSGK	16	Unmodified	_APPNATLEHFYLTSGK_			0	0	0	Q96G23	Q96G23	Q96G23	CERS2	Ceramide synthase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.633421	1744.87843	0.82079	0.00047822	-0.3179	-0.00018522	0.50289	0.000293	582.632409319826	10.365	0.16845	10.365	10.312	10.48	0	618	112	0.910492137470517	0.0751422852560739	0.910492137470517	551.34118391035	0	45.5018059023653						916	20	4	NaN	NaN	NaN	0.0022056	1	25751	47.915	44.83	1	303710			1340	2534	1132	1156	1340	1340		
APPNATLEHFYLTSGK	16	Unmodified	_APPNATLEHFYLTSGK_			0	0	0	Q96G23	Q96G23	Q96G23	CERS2	Ceramide synthase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.446494	1744.87843	2.3242	0.00203	-0.89912	-0.00078533	1.4251	0.0012447	873.445696574628	10.356	0.11524	10.356	10.321	10.436	0	210	37	1.18386433251387	0.0238990877205962	1.18386433251387	477.921852866355	0	9.64797736662035						345	14	4	NaN	NaN	NaN	1.1056E-06	1	25753	69.201	67.49	1	84425			1341	2534	1132	1156	1341	1341		
APPSVFAEVPQAQPVLVFK	19	Unmodified	_APPSVFAEVPQAQPVLVFK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.5644	2023.11425	0.90079	0.00091211	-0.79318	-0.00080315	0.10761	0.00010896	1013.06754892808	17.238	0.21285	17.238	17.158	17.371	0	162	70	1.21569043230068	0.0456841643315047	1.21569043230068	490.237540752537	0	18.4225291062193						1277	25	5	NaN	NaN	NaN	5.844E-07	1	32038	100.69	98.145	1	539660			1342	736	1133	1157	1342	1342		
APQETYADIGGLDNQIQEIK	20	Unmodified	_APQETYADIGGLDNQIQEIK_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.0475	2202.08044	1.507	0.0016607	0.52795	0.00058183	2.0349	0.0022426	1102.54966275788	13.637	0.1064	13.637	13.593	13.7	0	150	82	1.22363604450103	0.0535777922025418	1.22363604450103	493.168262840322	0	21.5937302812309						694	13	5	NaN	NaN	NaN	2.854E-06	1	34705	105.19	102.48	1	207080			1343	1368	1134	1158	1343	1343		
APQVDVDK	8	Unmodified	_APQVDVDK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.229625	870.444697	-0.99134	-0.00043245	1.1931	0.00052044	0.20171	8.7991E-05	436.230188452323	3.0577	0.25717	3.0577	2.9956	3.2528	0	840	31	0.759569036796863	0.0205001737706053	0.759569036796863	309.051109023712	0	8.34104753098137						288	30	3	NaN	NaN	NaN	0.01869	1	1864	48.157	34.51	1	57428			1344	1035	1135	1159	1344	1344		
APQVVAEAAK	10	Unmodified	_APQVVAEAAK_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.279649	982.544745	1.2726	0.00062649	-1.0407	-0.00051232	0.23192	0.00011417	492.279053609608	3.714	0.07979	3.714	3.6785	3.7583	0	702	31	0.853568545818287	0.0203693921717962	0.853568545818287	346.681726692355	0	8.27314465181263						127	10	3	NaN	NaN	NaN	0.0088535	1	3899	53.517	29.395	1	50852			1345	287	1136	1160	1345	1345		
APSDLYQIILK	11	Unmodified	_APSDLYQIILK_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.863546	1259.71254	0.98536	0.00062163	0.55541	0.00035039	1.5408	0.00097202	630.8644364711	15.278	0.19507	15.278	15.171	15.367	0	531	76	0.969216233931596	0.0505611644234498	0.969216233931596	392.454672916125	0	20.4732076820165						683	23	4	NaN	NaN	NaN	1.1045E-07	1	11216	154.81	122.86	1	309830			1346	559	1137	1161	1346	1346		
APSEEDSLSSVPISPYK	17	Unmodified	_APSEEDSLSSVPISPYK_			0	0	0	Q9Y676	Q9Y676	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.443814	1804.87307	2.5259	0.002282	0.24936	0.00022528	2.7753	0.0025073	903.443566407745	10.986	0.33695	10.986	10.897	11.234	0	288	103	1.13199748998575	0.067909901160663	1.13199748998575	456.863631002607	0	27.407802843873						1085	39	6	NaN	NaN	NaN	0.00010109	1	27349	69.327	65.822	1	243670			1347	3451	1138	1162	1347	1347		
APSTWEESGLR	11	Unmodified	_APSTWEESGLR_			0	0	0	Q9HC36	Q9HC36	Q9HC36	RNMTL1	rRNA methyltransferase 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.798934	1231.58332	1.2889	0.00079498	-4.082	-0.0025178	-2.7931	-0.0017228	617.297324461386	7.0303	0.24831	7.0303	6.8974	7.1457	0	591	43	0.928742107665821	0.0283790126462771	0.928742107665821	376.159040999483	0	11.4940650299199						494	29	3	NaN	NaN	NaN	0.041488	1	10347	32.549	21.847	1	153420			1348	2957	1139	1163	1348	1348		
APSVANVGSHCDLSLK	16	Unmodified	_APSVANVGSHCDLSLK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.278761	1653.81445	0.059763	3.3006E-05	0.075883	4.1909E-05	0.13565	7.4915E-05	552.279049238036	7.4738	0.062083	7.4738	7.4472	7.5092	0	690	43	0.86171403876517	0.028505272317873	0.86171403876517	522.030146103423	0	17.2686190585231						260	8	4	NaN	NaN	NaN	0.05177	1	23159	19.89	17.411	1	63845			1349	792	1140	1164	1349	1349		
APSVANVGSHCDLSLK	16	Unmodified	_APSVANVGSHCDLSLK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.914504	1653.81445	2.6042	0.0021561	-0.84141	-0.00069661	1.7628	0.0014595	827.914100351959	7.4738	0.070936	7.4738	7.4472	7.5181	0	300	28	1.12400150285141	0.0179971632725091	1.12400150285141	453.952327715738	0	7.26854380453238						168	9	4	NaN	NaN	NaN	0.0007075	1	23161	61.042	55.014	1	36167			1350	792	1140	1164	1350	1350		
APSVATVGSICDLNLK	16	Unmodified	_APSVATVGSICDLNLK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.934905	1643.85526	3.4356	0.0028273	-0.69367	-0.00057085	2.7419	0.0022564	822.934786155401	12.901	0.2483	12.901	12.848	13.096	0	324	61	1.1079963157843	0.040046054292028	1.1079963157843	447.510809471846	0	16.1742795685142						877	29	5	NaN	NaN	NaN	3.3111E-33	1	22864	221.56	154.9	1	424070			1351	326	1141	1165	1351	1351		
APSYIEIFGR	10	Unmodified	_APSYIEIFGR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.806031	1151.59751	0.7096	0.0004093	-0.96863	-0.00055871	-0.25903	-0.00014941	577.307230988475	13.487	0.19508	13.487	13.389	13.584	0	579	49	0.936845902828289	0.0324196809968852	0.936845902828289	379.73319828517	0	13.1407194237242						272	23	3	NaN	NaN	NaN	0.0010127	1	8112	74.269	58.687	1	71727			1352	1991	1142	1166	1352	1352		
APSYLEISSMR	11	Unmodified	_APSYLEISSMR_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.313363	1252.61217	1.223	0.00076723	-0.25374	-0.00015917	0.9693	0.00060806	627.31312416283	10.631	0.19504	10.631	10.569	10.764	0	579	43	0.936845902828289	0.0283593603705795	0.936845902828289	379.370608311037	0	11.4839673873992						274	23	2	NaN	NaN	NaN	3.6047E-05	1	10985	129.28	105.71	1	110160			1353	1459	1143	1167	1353	1353		
APTNIVYK	8	Unmodified	_APTNIVYK_			0	0	0	P15927	P15927	P15927	RPA2	Replication protein A 32 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.258185	904.501818	0.092486	4.192E-05	1.157	0.00052441	1.2495	0.00056633	453.258569004407	4.5829	0.20393	4.5829	4.5475	4.7514	0	750	34	0.820941264895493	0.0224546522756353	0.820941264895493	333.826798595329	0	9.13093908575888						353	24	3	NaN	NaN	NaN	0.072852	1	2407	39.324	18.049	1	114490			1354	719	1144	1168	1354	1354		
APVAGTCYQAEWDDYVPK	18	Unmodified	_APVAGTCYQAEWDDYVPK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.4673	2068.92004	2.1252	0.0022006	-0.1054	-0.00010914	2.0198	0.0020914	1035.96868021836	13.212	0.30151	13.212	13.043	13.345	0	204	124	1.18784641916898	0.0816049175957942	1.18784641916898	478.936917721553	0	32.9029132668464						2931	35	6	NaN	NaN	NaN	3.2892E-19	1	32854	116.36	113.28	1	963640			1355	903	1145	1169	1355	1355		
APVAIGVAAMSTAEMLTSGLK	21	Unmodified	_APVAIGVAAMSTAEMLTSGLK_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.53667	2017.05878	0.067078	6.7717E-05	0.0066558	6.7193E-06	0.073734	7.4437E-05	1009.53618613971	19.986	0.017747	19.986	19.978	19.995	0	117	25	1.24546401832526	0.0158650992955103	1.24546401832526	502.254266607066	0	6.39786753697592						50	3	3	NaN	NaN	NaN	0.011182	1	31940	34.472	32.631	1	7877.9			1356	1030	1146	1170	1356	1356		
APVDITGQFEK	11	Unmodified	_APVDITGQFEK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.814053	1203.61355	1.0673	0.00064339	0.71948	0.00043371	1.7868	0.0010771	603.316625609238	9.2213	0.2572	9.2213	9.106	9.3632	0	588	73	0.93076847747433	0.0485824138417266	0.93076847747433	377.076824969839	0	19.6819110274545						1013	30	4	NaN	NaN	NaN	0.0069317	1	9572	48.785	0	1	330100			1357	1137	1147	1171	1357	1357		
APVEHVVADAGAFLR	15	Unmodified	_APVEHVVADAGAFLR_			0	0	0	Q9ULX3	Q9ULX3	Q9ULX3	NOB1	RNA-binding protein NOB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.947452	1550.82053	-1.925	-0.00099706	-0.33425	-0.00017313	-2.2593	-0.0011702	517.947171208621	12.201	0.11529	12.201	12.121	12.236	0	795	40	0.790287188799094	0.026585355643111	0.790287188799094	479.023189331991	0	16.1143974370129						281	14	2	NaN	NaN	NaN	0.039794	1	20088	30.068	26.723	1	67725			1358	3282	1148	1172	1358	1358		
APVEHVVADAGAFLR	15	Unmodified	_APVEHVVADAGAFLR_			0	0	0	Q9ULX3	Q9ULX3	Q9ULX3	NOB1	RNA-binding protein NOB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.41754	1550.82053	1.3644	0.0010593	-1.5449	-0.0011995	-0.18058	-0.0001402	776.416398684682	12.192	0.19511	12.192	12.077	12.272	0	381	37	1.06991323971056	0.0240839792188599	1.06991323971056	432.345952943951	0	9.73220122865024						301	23	3	NaN	NaN	NaN	0.0046177	1	20090	51.569	41.084	1	93242			1359	3282	1148	1172	1359	1359		
APVIDIGIANTGK	13	Unmodified	_APVIDIGIANTGK_			0	0	0	Q9Y4P3	Q9Y4P3	Q9Y4P3	TBL2	Transducin beta-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.864077	1267.7136	1.4468	0.00091855	-0.64779	-0.00041126	0.79906	0.00050729	634.86390887845	11.314	0.13306	11.314	11.261	11.394	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	391.609514712292	0	9.00135899904774						271	16	3	NaN	NaN	NaN	0.00037285	1	11448	60	55.093	1	76252			1360	3413	1149	1173	1360	1360		
APVNTAELTDLLIQQNHIGSVIK	23	Unmodified	_APVNTAELTDLLIQQNHIGSVIK_			0	0	0	Q9P287	Q9P287	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.458622	2473.35404	0.85643	0.00070694	0.10917	9.0116E-05	0.9656	0.00079706	825.793069017427	17.105	0.15958	17.105	17.016	17.176	0	444	94	1.02770517576159	0.0624363408294141	1.02770517576159	620.873054417348	0	37.720002342767						950	19	5	NaN	NaN	NaN	1.2897E-09	1	36697	86.766	81.437	1	320020			1361	3154	1150	1174	1361	1361		
APVPASELLASGVLSR	16	Unmodified	_APVPASELLASGVLSR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.966512	1565.87771	-1.0091	-0.00052774	-0.51749	-0.00027063	-1.5266	-0.00079837	522.966703640951	14.657	0.079832	14.657	14.631	14.71	0	717	37	0.84338031290707	0.0244602575158872	0.84338031290707	511.16151234951	0	14.8250344867333						141	10	3	NaN	NaN	NaN	0.0028887	1	20539	47.57	45.587	1	29384			1362	1816	1151	1175	1362	1362		
APVPASELLASGVLSR	16	Unmodified	_APVPASELLASGVLSR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.94613	1565.87771	1.9641	0.0015397	-0.7466	-0.00058529	1.2175	0.00095445	784.445761848283	14.666	0.30153	14.666	14.542	14.843	0	348	85	1.09197348738011	0.05617275605671	1.09197348738011	441.222824462455	0	22.6971646945807						808	35	2	NaN	NaN	NaN	2.0762E-08	1	20540	110.91	98.887	1	614970			1363	1816	1151	1175	1363	1363		
APVPTGEVYFADSFDR	16	Unmodified	_APVPTGEVYFADSFDR_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.920309	1769.82606	3.0745	0.0027238	0.66172	0.00058623	3.7363	0.00331	886.421631109766	12.884	0.13302	12.884	12.83	12.963	0	312	25	1.11600111266355	0.016005187067117	1.11600111266355	450.475642942678	0	6.4605194857462						187	16	2	NaN	NaN	NaN	0.044736	1	26399	27.357	23.852	1	47559			1364	870	1152	1176	1364	1364		
APVPTGEVYFADSFDR	16	Unmodified	_APVPTGEVYFADSFDR_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.920309	1769.82606	3.2011	0.0028359	0.98451	0.00087219	4.1856	0.0037081	886.422744636732	13.868	0.24826	13.868	13.806	14.054	0	306	70	1.12000185836644	0.0460181056386699	1.12000185836644	452.090549240658	0	18.5752822620711						1848	29	6	NaN	NaN	NaN	2.2814E-07	1	26400	108.91	93.938	1	1636700			1365	870	1152	1176	1365	1365		
APVQPQQSPAAAPGGTDEK	19	Unmodified	_APVQPQQSPAAAPGGTDEK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.957954	1847.90136	3.7011	0.0034233	-2.7892	-0.0025799	0.91184	0.00084342	924.955335283586	4.1307	0.18623	4.1307	4.0686	4.2549	0	363	85	1.08195024817156	0.0561031279090141	1.08195024817156	436.587503248691	0	22.6386791625881						933	22	4	NaN	NaN	NaN	2.0274E-10	1	28429	97.268	85.25	1	243960			1366	1642	1153	1177	1366	1366		
APVSALPLAPNHLGGGAVVLGAESHASK	28	Unmodified	_APVSALPLAPNHLGGGAVVLGAESHASK_			0	0	0	Q13190	Q13190	Q13190	STX5	Syntaxin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	655.860597	2619.41328	0.77059	0.0005054	2.2455	0.0014728	3.0161	0.0019782	656.112859841148	12.112	0.097543	12.112	12.068	12.165	0	465	19	1.01360860968299	0.0120886137418381	1.01360860968299	816.219722884772	0	9.73449205557756						222	12	5	NaN	NaN	NaN	0.04025	1	37316	24.457	23.361	1	50648			1367	1641	1154	1178	1367	1367		
APVSYPNTLPESFTK	15	Unmodified	_APVSYPNTLPESFTK_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.92232	1649.83009	2.2726	0.001877	0.30866	0.00025493	2.5813	0.002132	825.922193214117	11.438	0.16849	11.438	11.35	11.518	-1.7764E-15	315	31	1.11400032671325	0.0200119941897818	1.11400032671325	449.92215913454	0	8.08243895315502						410	20	4	NaN	NaN	NaN	4.2333E-06	1	23042	93.772	78.624	1	109020			1368	2394	1155	1179	1368	1368		
APWELLELR	9	Unmodified	_APWELLELR_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.816399	1125.61824	-0.14291	-8.0574E-05	-1.1769	-0.00066357	-1.3198	-0.00074415	563.8158844875	16.342	0.23053	16.342	16.28	16.51	0	621	49	0.908462957275599	0.0324691438304571	0.908462957275599	368.329244115195	0	13.1643619680486						688	27	5	NaN	NaN	NaN	0.00013798	1	7417	113.7	76.107	1	599220			1369	1251	1156	1180	1369	1369		
APWVEQEGPEYWDR	14	Unmodified	_APWVEQEGPEYWDR_			0	0	0	P10321	P10321	P10321	HLA-C	HLA class I histocompatibility antigen, Cw-7 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.397001	1760.77945	2.6992	0.0023791	6.0594	0.0053408	8.7586	0.0077198	881.904124609501	12.316	0.22169	12.316	12.174	12.396	0	336	43	1.09998710857178	0.0280515443878693	1.09998710857178	444.029278143178	0	11.3235027104267						601	26	5	NaN	NaN	NaN	0.0021893	1	26160	76.563	69.816	1	225460			1370	624	1157	1181	1370	1370		
APYFSGSSTFSPTILSSDK	19	Unmodified	_APYFSGSSTFSPTILSSDK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.48347	1990.95239	1.9048	0.0018981	1.2252	0.0012209	3.13	0.003119	996.986280315336	14.249	0.14189	14.249	14.178	14.32	0	234	43	1.16792504164217	0.0279014290845747	1.16792504164217	471.027580880475	0	11.2527278517262						352	17	4	NaN	NaN	NaN	0.033901	1	31474	29.217	28.651	1	75034			1371	2140	1158	1182	1371	1371		
AQAAAPASVPAQAPK	15	Unmodified	_AQAAAPASVPAQAPK_			0	0	0	P47914	P47914	P47914	RPL29	60S ribosomal protein L29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.377883	1376.74121	2.5395	0.0017507	-0.99702	-0.00068732	1.5425	0.0010633	689.377133897674	4.6805	0.30149	4.6805	4.5918	4.8933	0	486	100	0.999498404980629	0.0665104280844176	0.999498404980629	404.34328339938	0	26.9065410589354						1762	35	4	NaN	NaN	NaN	3.9189E-08	1	14715	140.57	121.25	1	899320			1372	1102	1159	1183	1372	1372		
AQAEAQQPTFDALR	14	Unmodified	_AQAEAQQPTFDALR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.386436	1544.75832	2.1021	0.0016258	-1.1765	-0.0009099	0.92562	0.00071586	773.385551058215	8.4761	0.15074	8.4761	8.414	8.5648	0	417	55	1.04580932352505	0.0362008098863784	1.04580932352505	422.620368917151	0	14.6290526247296						350	18	3	NaN	NaN	NaN	0.00022218	1	19877	84.999	52.859	1	95238			1373	1816	1160	1184	1373	1373		
AQAEAQQPTFDALRDELR	18	Unmodified	_AQAEAQQPTFDALRDELR_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.01162	2058.01303	0.21087	0.00014487	-0.31886	-0.00021906	-0.10799	-7.419E-05	687.345722277972	11.66	0.11519	11.66	11.616	11.731	0	630	112	0.902373728295776	0.0750173738808302	0.902373728295776	545.769981209449	0	45.3717007150091						750	14	4	NaN	NaN	NaN	1.5647E-07	1	32672	124.24	118.54	1	224360			1374	1816	1161	1185	1374	1374		
AQAELVGTADEATR	14	Unmodified	_AQAELVGTADEATR_			0	0	0	P30049	P30049	P30049	ATP5D	ATP synthase subunit delta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.357345	1430.70014	2.0656	0.0014797	-0.44762	-0.00032066	1.618	0.0011591	716.357486803759	5.8775	0.45226	5.8775	5.78	6.2323	0	507	100	0.985374541851584	0.0665472032376223	0.985374541851584	398.480016928006	0	26.9113210727066						1359	52	3	NaN	NaN	NaN	2.4919E-11	1	16416	165.72	82.367	1	923150			1375	899	1162	1186	1375	1375		
AQAEVEGLGK	10	Unmodified	_AQAEVEGLGK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.266739	1000.51892	0.59463	0.00029807	0.87906	0.00044064	1.4737	0.00073871	501.267159316145	4.1396	0.23944	4.1396	4.0864	4.3258	0	732	43	0.833184998970724	0.0285488687394279	0.833184998970724	338.318888245354	0	11.5924093022768						435	28	3	NaN	NaN	NaN	0.0062512	1	4295	74.269	49.418	1	164800			1376	1816	1163	1187	1376	1376		
AQAHAENNEFITWNDIQACVDHVNLVVQEEHER	33	Unmodified	_AQAHAENNEFITWNDIQACVDHVNLVVQEEHER_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	979.708042	3914.80306	0.5668	0.0005553	-0.37861	-0.00037093	0.18819	0.00018437	979.954532901427	17.007	0.11526	17.007	16.963	17.078	0	243	28	1.16194328902838	0.0179501929154187	1.16194328902838	934.032605583051	0	14.4293319801578						375	14	6	NaN	NaN	NaN	0.000254	1	38749	25.974	23.886	1	92928			1377	1095	1164	1188	1377	1377		
AQALEDLAGFK	11	Unmodified	_AQALEDLAGFK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.808771	1161.60299	0.13956	8.12E-05	-0.66949	-0.00038951	-0.52992	-0.00030831	581.808653906551	11.553	0.2572	11.553	11.447	11.704	0	621	34	0.908462957275599	0.0223209853619647	0.908462957275599	368.191159876567	0	9.04647726601416						453	30	4	NaN	NaN	NaN	0.00088533	1	8382	53.517	36.865	1	211650			1378	1074	1165	1189	1378	1378		
AQALEELTGFR	11	Unmodified	_AQALEELTGFR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.824952	1233.63535	0.7514	0.00046424	-0.049041	-3.0299E-05	0.70236	0.00043394	617.825029466946	12.29	0.14191	12.29	12.192	12.334	0	588	40	0.93076847747433	0.0263355149208984	0.93076847747433	376.972793637824	0	10.6662106333478						270	17	3	NaN	NaN	NaN	0.0020383	1	10434	59.645	44.497	1	88352			1379	1074	1166	1190	1379	1379		
AQALVQYLEEPLTQVAAS	18	Unmodified	_AQALVQYLEEPLTQVAAS_			0	0	0	Q9Y2Q5	Q9Y2Q5	Q9Y2Q5	LAMTOR2	Ragulator complex protein LAMTOR2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.009655	1930.00476	1.2244	0.0011827	-0.36007	-0.00034783	0.86428	0.00083491	966.510054289083	19.552	0.097528	19.552	19.508	19.605	0	219	40	1.17788915118882	0.0258924572936763	1.17788915118882	475.149990843494	0	10.444786619852						214	12	3	NaN	NaN	NaN	0.0029755	1	30302	19.637	18.96	1	42898			1380	3346	1167	1191	1380	1380		
AQATQLLEGLVQELQK	16	Unmodified	_AQATQLLEGLVQELQK_			0	0	0	P42229	P42229	P42229	STAT5A	Signal transducer and activator of transcription 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.993808	1767.97306	1.6855	0.0014916	-1.2926	-0.0011439	0.39288	0.00034769	884.992502996169	19.703	0.062073	19.703	19.685	19.747	0	285	31	1.13399579921816	0.0199844694124975	1.13399579921816	457.742963301696	0	8.06682904398383						137	8	3	NaN	NaN	NaN	0.00013375	1	26360	66.485	48.387	1	29987			1381	1046	1168	1192	1381	1381		
AQATQLLEGLVQELQK	16	Unmodified	_AQATQLLEGLVQELQK_			0	0	0	P42229	P42229	P42229	STAT5A	Signal transducer and activator of transcription 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.331631	1767.97306	-0.51023	-0.00030121	1.4753	0.00087094	0.96511	0.00056973	590.667422100871	19.712	0.035492	19.712	19.694	19.729	0	648	16	0.890187667287968	0.0101599824533473	0.890187667287968	538.99052375175	0	6.15166269436384						47	5	2	NaN	NaN	NaN	0.0021947	1	26361	72.846	58.483	1	10229			1382	1046	1168	1192	1382	1382		
AQAVLEEDHYGMEDVK	16	Unmodified	_AQAVLEEDHYGMEDVK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.948969	1832.82508	0.57603	0.0003525	0.514	0.00031454	1.09	0.00066704	611.94937932535	7.8463	0.1064	7.8463	7.8108	7.9172	0	681	40	0.867820189810857	0.0264526463218361	0.867820189810857	525.302938264873	0	16.0121336204112						340	13	4	NaN	NaN	NaN	0.0014868	1	28036	73.891	71.754	1	119410			1383	990	1169	1193	1383	1383		
AQAVLEEDHYGMEDVK	16	Unmodified	_AQAVLEEDHYGMEDVK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.419816	1832.82508	2.7124	0.0024884	1.8388	0.001687	4.5512	0.0041753	917.923185890133	7.8463	0.088595	7.8463	7.802	7.8906	0	282	46	1.13599383354359	0.0299457990426275	1.13599383354359	458.423193730326	0	12.084439572269						221	11	3	NaN	NaN	NaN	0.0001734	1	28037	70.598	69.635	1	57405			1384	990	1169	1193	1384	1384		
AQAVSEDAGGNEGR	14	Unmodified	_AQAVSEDAGGNEGR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.808019	1359.60148	2.0914	0.0014238	-1.5203	-0.001035	0.57108	0.0003888	680.807054343403	2.2508	0.21284	2.2508	2.233	2.4459	0	633	52	0.900343422309015	0.0345104276120216	0.900343422309015	364.276160649017	0	13.962812146306						430	25	3	NaN	NaN	NaN	1.1768E-07	1	14165	151.52	145.26	1	83900			1385	1280	1170	1194	1385	1385		
AQAVSEEEEEEEGK	14	Unmodified	_AQAVSEEEEEEEGK_			0	0	0	Q9GZR7	Q9GZR7	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.336472	1562.65839	2.9621	0.0023174	-1.9049	-0.0014903	1.0572	0.00082711	782.335106171017	3.04	0.070923	3.04	3.0222	3.0932	0	441	25	1.02971785871157	0.0161003532377459	1.02971785871157	416.075331676232	0	6.50562652363988						106	9	2	NaN	NaN	NaN	5.2131E-05	1	20421	95.138	93.881	1	22615			1386	2829	1171	1195	1386	1386		
AQCETLSPDGLPEEQPQTTK	20	Unmodified	_AQCETLSPDGLPEEQPQTTK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1115.02062	2228.02669	2.1881	0.0024398	-3.7088	-0.0041354	-1.5208	-0.0016957	1115.51814047386	8.3342	0.079862	8.3342	8.2898	8.3697	0	135	67	1.23356193185193	0.0436889044059285	1.23356193185193	497.132457215578	0	17.6068763469127						310	10	3	NaN	NaN	NaN	1.227E-10	1	34966	72.075	70.649	1	62440			1387	2149	1172	1196	1387	1387		
AQCPIVER	8	Unmodified	_AQCPIVER_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.750201	971.48585	0.85022	0.00041385	1.7866	0.00086962	2.6368	0.0012835	486.751510763077	3.5189	0.37257	3.5189	3.4213	3.7938	0	732	58	0.833184998970724	0.0387745352190065	0.833184998970724	338.455991965256	0	15.75097222916						1353	43	5	NaN	NaN	NaN	0.014717	1	3660	56.014	39.557	1	508000			1388	1090	1173	1197	1388	1388		
AQCYMDTEQYEEAVR	15	Unmodified	_AQCYMDTEQYEEAVR_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.893108	1891.77166	1.9464	0.001843	-0.048781	-4.6191E-05	1.8976	0.0017968	947.39465196565	9.3011	0.079845	9.3011	9.2745	9.3544	0	297	31	1.12600091227925	0.0199954725049127	1.12600091227925	454.284262647039	0	8.06715907963735						255	10	4	NaN	NaN	NaN	0.00013127	1	29406	76.563	76.464	1	72560			1389	2658	1174	1198	1389	1389		
AQCYMDTEQYEEAVRDYEK	19	Unmodified	_AQCYMDTEQYEEAVRDYEK_			0	0	1	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	810.007107	2426.99949	1.9634	0.0015904	0.40298	0.00032641	2.3664	0.0019168	810.342153612843	11.323	0.062113	11.323	11.287	11.35	0	465	28	1.01360860968299	0.0181316691243478	1.01360860968299	612.422146856142	0	10.9551513524448						160	8	4	NaN	NaN	NaN	0.041609	1	36475	17.807	16.713	1	27165			1390	2658	1175	1199	1390	1390		
AQDEGLLSDVVPFK	14	Unmodified	_AQDEGLLSDVVPFK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.395938	1516.77732	1.5158	0.0011511	-0.022293	-1.693E-05	1.4935	0.0011342	759.395520313453	16.147	0.23054	16.147	16.076	16.307	0	414	67	1.04781950764076	0.044233231257419	1.04781950764076	423.502075910238	0	17.877950472513						681	27	4	NaN	NaN	NaN	9.0214E-17	1	19033	199.51	176.61	1	325680			1391	1267	1176	1200	1391	1391		
AQDGSHPLSLQDLIEK	16	Unmodified	_AQDGSHPLSLQDLIEK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.303852	1749.88973	-1.2284	-0.00071776	-0.36327	-0.00021226	-1.5917	-0.00093002	584.30344321003	12.777	0.12416	12.777	12.733	12.857	0	813	22	0.778007628350577	0.0143331381547551	0.778007628350577	471.105633401803	0	8.67912072192274						173	15	4	NaN	NaN	NaN	0.0013352	1	25886	42.941	38.958	1	38772			1392	400	1177	1201	1392	1392		
AQDGSHPLSLQDLIEK	16	Unmodified	_AQDGSHPLSLQDLIEK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.303852	1749.88973	-0.76385	-0.00044632	-0.82105	-0.00047974	-1.5849	-0.00092606	584.303443675006	12.777	0.12416	12.777	12.733	12.857	0	765	40	0.810730346695089	0.0265557785134225	0.810730346695089	490.920167046065	0	16.080275367749						481	15	5	NaN	NaN	NaN	0.00046148	1	25887	82.437	69.262	1	176960			1393	400	1177	1201	1393	1393		
AQDGSHPLSLQDLIEK	16	Unmodified	_AQDGSHPLSLQDLIEK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.95214	1749.88973	2.6772	0.0023451	-2.0438	-0.0017903	0.63333	0.00055476	875.950852226341	12.777	0.15964	12.777	12.724	12.884	0	291	37	1.12999890578964	0.0239846644495882	1.12999890578964	456.166276664033	0	9.68230590573825						318	19	4	NaN	NaN	NaN	0.0044981	1	25888	52.201	41.23	1	86198			1394	400	1177	1201	1394	1394		
AQDIEAGDGTTSVVIIAGSLLDSCTK	26	Unmodified	_AQDIEAGDGTTSVVIIAGSLLDSCTK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	874.437335	2620.29018	1.0767	0.00094149	0.332	0.00029032	1.4087	0.0012318	874.771951890202	19.153	0.13299	19.153	19.109	19.242	0	297	34	1.12600091227925	0.0219965339302892	1.12600091227925	680.043851053779	0	13.2847207143996						408	16	5	NaN	NaN	NaN	5.8143E-10	1	37317	118.07	114.49	1	124790			1395	1175	1178	1202	1395	1395		
AQDIQCGLQSR	11	Unmodified	_AQDIQCGLQSR_			0	0	0	Q8WVJ2	Q8WVJ2	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.309143	1274.60373	2.3082	0.0014734	-0.76522	-0.00048844	1.543	0.00098493	638.309410404921	4.4411	0.13296	4.4411	4.3968	4.5297	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	380.939041362354	0	8.1990180618335						159	16	2	NaN	NaN	NaN	0.0025679	1	11612	70.195	43.248	1	44766			1396	2379	1179	1203	1396	1396		
AQDPSEVLTMLTNETGFEISSSDATVK	27	Unmodified	_AQDPSEVLTMLTNETGFEISSSDATVK_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	957.458576	2869.3539	1.3153	0.0012593	-0.38622	-0.00036979	0.92908	0.00088956	957.792752364473	19.756	0.062065	19.756	19.72	19.782	0	402	34	1.05585747106793	0.0220998283327687	1.05585747106793	637.388819822007	0	13.340989560878						195	8	5	NaN	NaN	NaN	5.3139E-21	1	38033	113.63	112.89	1	33848			1397	1605	1180	1204	1397	1397		
AQDVLVQEMEVVK	13	Unmodified	_AQDVLVQEMEVVK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.392341	1486.77013	2.4378	0.0018147	2.3234	0.0017295	4.7612	0.0035442	744.89729480165	12.875	0.17736	12.875	12.804	12.981	0	390	61	1.06389100039157	0.0401732058727873	1.06389100039157	430.076229446623	0	16.2399539992276						645	21	4	NaN	NaN	NaN	0.00019115	1	18137	91.245	75.365	1	181180			1398	2640	1181	1205	1398	1398		
AQEAEAGVLGNEK	13	Unmodified	_AQEAEAGVLGNEK_			0	0	0	Q8N3D4	Q8N3D4	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.328056	1314.64156	1.8584	0.0012235	4.1035	0.0027014	5.9619	0.0039249	658.331264973701	6.0815	0.19506	6.0815	5.9929	6.1879	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	396.365064432489	0	8.17368311226386						264	23	3	NaN	NaN	NaN	0.047341	1	12793	39.039	19.715	1	70746			1399	2246	1182	1206	1399	1399		
AQEAPGQAEPPAAAEVQGAGNENEPR	26	Unmodified	_AQEAPGQAEPPAAAEVQGAGNENEPR_			0	0	0	O14745	O14745	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.403905	2587.18989	3.1685	0.0027357	-1.2906	-0.0011143	1.8779	0.0016214	863.402623766259	6.8974	0.16845	6.8974	6.7821	6.9505	0	318	100	1.11199926528787	0.0660987996620184	1.11199926528787	671.632954358749	0	39.9228070398733						859	20	3	NaN	NaN	NaN	0.00034928	1	37188	53.44	49.59	1	170020			1400	116	1183	1207	1400	1400		
AQEEAERLEADR	12	Unmodified	_AQEEAERLEADR_			0	0	1	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.895305	1415.66409	-0.77309	-0.00036559	1.6755	0.00079233	0.9024	0.00042674	472.896146543214	3.4035	0.12423	3.4035	3.3769	3.5012	0	786	31	0.796423123669906	0.0204460030373547	0.796423123669906	483.14945789817	0	12.4035515671146						269	15	4	NaN	NaN	NaN	0.0033258	1	15952	57.888	47.186	1	79119			1401	710	1184	1208	1401	1401		
AQEGPDAEIIGGER	14	Unmodified	_AQEGPDAEIIGGER_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.34952	1440.68449	1.0783	0.00077786	0.3347	0.00024144	1.413	0.0010193	721.349377466438	7.0303	0.070931	7.0303	6.986	7.0569	0	513	22	0.981336640919867	0.0141355861424926	0.981336640919867	396.82077324916	0	5.71597348911382						115	9	3	NaN	NaN	NaN	0.016395	1	16688	25.705	24.061	1	20194			1402	253	1185	1209	1402	1402		
AQELDALDNSHPIEVSVGHPSEVDEIFDAISYSK	34	Unmodified	_AQELDALDNSHPIEVSVGHPSEVDEIFDAISYSK_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	928.696971	3710.75878	0.85684	0.00079575	0.32544	0.00030224	1.1823	0.001098	929.198057687454	17.716	0.1596	17.716	17.672	17.832	0	489	46	0.997481546940468	0.0302696119755409	0.997481546940468	801.985680698516	0	24.3370871763435						713	19	5	NaN	NaN	NaN	0.014668	1	38716	11.981	11.891	1	139110			1403	1277	1186	1210	1403	1403		
AQELIQATNQILSHR	15	Unmodified	_AQELIQATNQILSHR_			0	0	0	Q9H7N4	Q9H7N4	Q9H7N4	SCAF1	Splicing factor, arginine/serine-rich 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.647953	1720.92203	-0.63956	-0.00036752	-1.19	-0.00068385	-1.8296	-0.0010514	574.981208993571	11.571	0.071067	11.571	11.545	11.616	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	524.326651151372	0	11.0938085511901						173	9	3	NaN	NaN	NaN	0.00015603	1	25090	58.338	57.599	1	45578			1404	2918	1187	1211	1404	1404		
AQEPESGLSEETQVK	15	Unmodified	_AQEPESGLSEETQVK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.391581	1630.76861	3.0753	0.0025107	-2.0323	-0.0016591	1.043	0.00085151	816.389887508489	5.6559	0.26609	5.6559	5.5139	5.78	0	381	61	1.06991323971056	0.0401621251904793	1.06991323971056	432.158346691539	0	16.222247727892						929	31	4	NaN	NaN	NaN	2.1967E-06	1	22507	108.91	94.458	1	401300			1405	1465	1188	1212	1405	1405		
AQEPLVDGCSGGGR	14	Unmodified	_AQEPLVDGCSGGGR_			0	0	0	Q7Z2K6	Q7Z2K6	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.822615	1401.63068	2.3547	0.0016526	-0.68842	-0.00048315	1.6663	0.0011695	701.822733266261	4.3968	0.15074	4.3968	4.3435	4.4943	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.475222269957	0	8.98835379467056						257	18	3	NaN	NaN	NaN	0.0095192	1	15489	28.228	25.749	1	49435			1406	2127	1189	1213	1406	1406		
AQEQQQQMAELHSK	14	Unmodified	_AQEQQQQMAELHSK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.598382	1654.77332	0.4248	0.00023474	1.2853	0.00071023	1.7101	0.00094498	552.598898924485	3.1641	0.10643	3.1641	3.1375	3.2439	0	735	25	0.831145085810763	0.0163204408443606	0.831145085810763	503.50891411048	0	9.88694704166159						153	13	3	NaN	NaN	NaN	0.00014238	1	23185	79.889	66.715	1	34970			1407	3158	1190	1214	1407	1407		
AQESVGIYEVTHQFVK	16	Unmodified	_AQESVGIYEVTHQFVK_			0	0	0	Q9NWV4	Q9NWV4	Q9NWV4	C1orf123	UPF0587 protein C1orf123	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.315981	1833.92611	0.11846	7.2535E-05	-0.28611	-0.00017519	-0.16765	-0.00010265	612.315238557893	12.414	0.12411	12.414	12.361	12.485	0	621	58	0.908462957275599	0.038570481256978	0.908462957275599	549.902064618746	0	23.3471129523627						399	15	4	NaN	NaN	NaN	0.024515	1	28082	26.517	23.229	1	98348			1408	3087	1191	1215	1408	1408		
AQESVGIYEVTHQFVK	16	Unmodified	_AQESVGIYEVTHQFVK_			0	0	0	Q9NWV4	Q9NWV4	Q9NWV4	C1orf123	UPF0587 protein C1orf123	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.970333	1833.92611	1.7624	0.0016178	0.59855	0.00054945	2.361	0.0021673	918.472255369757	12.423	0.097526	12.423	12.378	12.476	0	183	37	1.20177511391933	0.0238662955087066	1.20177511391933	484.966634957232	0	9.63105067470156						339	12	4	NaN	NaN	NaN	7.2616E-07	1	28084	70.806	63.23	1	107820			1409	3087	1191	1215	1409	1409		
AQETGHLVMDVR	12	Unmodified	_AQETGHLVMDVR_			0	0	0	Q8WWI1	Q8WWI1	Q8WWI1	LMO7	LIM domain only protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.340443	1354.66633	1.9591	0.0013289	0.26938	0.00018273	2.2285	0.0015116	678.340974322527	5.8066	0.11525	5.8066	5.7623	5.8775	0	468	52	1.01159370163332	0.0342723855002213	1.01159370163332	409.302678306901	0	13.8670092098812						308	14	4	NaN	NaN	NaN	0.0011075	1	14037	65.879	56.365	1	67645			1410	2389	1192	1216	1410	1410		
AQFAQPEILIGTIPGAGGTQR	21	Unmodified	_AQFAQPEILIGTIPGAGGTQR_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.07365	2124.13275	0.96575	0.0010267	-0.43109	-0.00045828	0.53466	0.00056838	1063.57419158003	15.624	0.13298	15.624	15.571	15.704	0	147	97	1.22562176648663	0.0635388227068876	1.22562176648663	494.082208050447	0	25.6142659002682						1013	16	5	NaN	NaN	NaN	2.8144E-11	1	33673	92.593	82.682	1	304920			1411	901	1193	1217	1411	1411		
AQFAQPEILIGTIPGAGGTQR	21	Unmodified	_AQFAQPEILIGTIPGAGGTQR_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.051527	2124.13275	1.361	0.00096504	1.1239	0.0007969	2.4849	0.0017619	709.386387889161	15.624	0.088662	15.624	15.579	15.668	0	399	28	1.0578662689527	0.0180791826829763	1.0578662689527	639.680978697824	0	10.9322979776568						252	11	4	NaN	NaN	NaN	0.016758	1	33674	60.324	57.25	1	74094			1412	901	1193	1217	1412	1412		
AQFEGIVTDLIR	12	Unmodified	_AQFEGIVTDLIR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.374809	1360.73507	1.0077	0.00068659	1.4478	0.00098648	2.4554	0.0016731	681.375980210162	16.36	0.41674	16.36	16.227	16.644	0	474	94	1.00756305028564	0.0624794835061888	1.00756305028564	407.6534599384	0	25.278792845015						1633	48	5	NaN	NaN	NaN	0.00056624	1	14238	79.889	67.932	1	3431700			1413	1007	1194	1218	1413	1413		
AQFFVEDASTASALK	15	Unmodified	_AQFFVEDASTASALK_			0	0	0	Q9UBU9	Q9UBU9	Q9UBU9	NXF1	Nuclear RNA export factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.898845	1583.78314	1.1578	0.00091805	0.29153	0.00023115	1.4494	0.0011492	793.399971314798	11.899	0.1951	11.899	11.828	12.024	0	369	40	1.07793901817685	0.0260783915787524	1.07793901817685	435.508888112053	0	10.5361909428069						400	23	3	NaN	NaN	NaN	0.0013035	1	21083	72.846	68.318	1	118760			1414	3191	1195	1219	1414	1414		
AQGGTVLPTEPQSEEQLSK	19	Unmodified	_AQGGTVLPTEPQSEEQLSK_			0	0	0	Q14789	Q14789	Q14789	GOLGB1	Golgin subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.00256	1997.99056	1.9803	0.0019803	-0.54817	-0.00054817	1.4322	0.0014322	1000.50335866317	8.1656	0.062062	8.1656	8.1479	8.21	0	243	16	1.16194328902838	0.00997232873803156	1.16194328902838	468.603698906752	0	4.02177126670551						58	8	2	NaN	NaN	NaN	0.0026294	1	31599	22.039	11.067	1	10967			1415	1775	1196	1220	1415	1415		
AQGPAASAEEPK	12	Unmodified	_AQGPAASAEEPK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.28566	1154.55677	1.5581	0.000901	0.96564	0.00055842	2.5237	0.0014594	578.285084732631	2.5168	0.23941	2.5168	2.4636	2.703	0	612	34	0.914549654013882	0.0223147973671984	0.914549654013882	370.684573574641	0	9.0446167795925						335	28	3	NaN	NaN	NaN	0.00067216	1	8183	64.906	52.839	1	73279			1416	1468	1197	1221	1416	1416		
AQGPAASAEEPKPVEAPAANSDQTVTVK	28	Unmodified	_AQGPAASAEEPKPVEAPAANSDQTVTVK_			0	0	1	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	921.798032	2762.37227	2.7755	0.0025584	-1.1325	-0.001044	1.643	0.0015145	922.131118094508	6.7111	0.20393	6.7111	6.6491	6.853	0	429	97	1.03776581230406	0.0644192745537726	1.03776581230406	626.584469844257	0	38.8952078739327						1655	24	6	NaN	NaN	NaN	2.0907E-35	1	37798	198.64	177.5	1	678890			1417	1468	1198	1222	1417	1417		
AQHEDQVEQYK	11	Unmodified	_AQHEDQVEQYK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.817855	1373.62116	2.7909	0.0019196	-2.0514	-0.001411	0.73946	0.00050862	687.816506389317	2.4281	0.31036	2.4281	2.4015	2.7119	0	528	49	0.971237000454584	0.032338985271784	0.971237000454584	392.919116477017	0	13.0829092330764						636	36	4	NaN	NaN	NaN	0.0013059	1	14603	81.799	76.303	1	121700			1418	493	1199	1223	1418	1418		
AQHEDQVEQYK	11	Unmodified	_AQHEDQVEQYK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.880996	1373.62116	0.23911	0.00010972	0.64087	0.00029409	0.87998	0.00040381	458.881296074706	2.4281	0.42564	2.4281	2.4015	2.8272	0	813	34	0.778007628350577	0.0225235047805306	0.778007628350577	472.117252938088	0	13.6679060924713						755	49	4	NaN	NaN	NaN	0.0018846	1	14604	99.855	86.581	1	253700			1419	493	1199	1223	1419	1419		
AQHFSLAACDVVGFDLDHTLCR	22	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AQHFSLAACDVVGFDLDHTLCR_			1	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	858.733652	2573.17913	1.2946	0.0011117	1.2129	0.0010416	2.5075	0.0021533	859.404450890328	17.255	0.14189	17.255	17.22	17.362	0	351	22	1.08996939197032	0.01403060177981	1.08996939197032	658.346344729492	0	8.47454567453065						313	17	5	NaN	NaN	NaN	2.2816E-08	1	37126	62.804	52.931	1	71241			1420	2001	1200	1224	1420	1420		
AQHLADILSSK	11	Unmodified	_AQHLADILSSK_			0	0	0	Q9UHI6	Q9UHI6	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.827495	1181.64044	1.4886	0.000881	1.1094	0.00065659	2.598	0.0015376	591.828232214476	7.2432	0.070942	7.2432	7.2166	7.2875	0	531	28	0.969216233931596	0.0181894169559895	0.969216233931596	392.735690925027	0	7.370525777056						103	9	2	NaN	NaN	NaN	0.029126	1	8928	41.824	38.479	1	24860			1421	3218	1201	1225	1421	1421		
AQHQQALSSLELLNVLFR	18	Unmodified	_AQHQQALSSLELLNVLFR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.716367	2066.12727	-0.52903	-0.00036488	0.33561	0.00023148	-0.19341	-0.0001334	690.051031307479	19.375	0.062097	19.375	19.348	19.41	0	636	34	0.898312834727904	0.0223426636256	0.898312834727904	543.299600169473	0	13.5128429042053						195	8	3	NaN	NaN	NaN	4.6389E-05	1	32818	112.95	108.64	1	47835			1422	2698	1202	1226	1422	1422		
AQHQQALSSLELLNVLFR	18	Unmodified	_AQHQQALSSLELLNVLFR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.716367	2066.12727	0.092566	6.3844E-05	0.25865	0.00017839	0.35121	0.00024224	690.050977781406	19.383	0.0533	19.383	19.348	19.401	0	483	19	1.00151498427745	0.0120986401864689	1.00151498427745	605.716260267172	0	7.31725755791172						67	7	2	NaN	NaN	NaN	0.00024602	1	32819	73.502	65.134	1	20028			1423	2698	1202	1226	1423	1423		
AQHVFQHAVPQEGK	14	Unmodified	_AQHVFQHAVPQEGK_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.939068	1574.79537	1.03	0.00054171	1.1987	0.00063045	2.2287	0.0011722	526.273748023679	3.4035	0.11537	3.4035	3.3592	3.4746	0	696	31	0.857641857947968	0.0203637344294858	0.857641857947968	519.77946682205	0	12.3415746633325						270	14	4	NaN	NaN	NaN	0.0002069	1	20827	76.255	71.104	1	83428			1424	1706	1203	1227	1424	1424		
AQIAGYLYGVSPPDNPQVK	19	Unmodified	_AQIAGYLYGVSPPDNPQVK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.0231	2016.03164	1.6787	0.0016939	-2.0247	-0.0020429	-0.34593	-0.00034905	1009.52331929644	12.609	0.3813	12.609	12.396	12.777	0	180	64	1.203763835057	0.0417574339727618	1.203763835057	485.439665213907	0	16.839444895742						905	44	4	NaN	NaN	NaN	0.0022895	1	31913	71.912	56.384	1	223460			1425	2064	1204	1228	1425	1425		
AQIEQVIANCEHK	13	Unmodified	_AQIEQVIANCEHK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.924318	1538.75113	-0.6094	-0.00031319	0.22762	0.00011698	-0.38179	-0.00019621	513.924542907246	6.7111	0.10643	6.7111	6.6668	6.7732	0	762	28	0.812773098473386	0.018384767783428	0.812773098473386	492.686901437181	0	11.1444809010935						231	13	4	NaN	NaN	NaN	0.02045	1	19686	46.068	44.694	1	72319			1426	2422	1205	1229	1426	1426		
AQIEQVIANCEHK	13	Unmodified	_AQIEQVIANCEHK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.382839	1538.75113	2.5017	0.0019273	0.37665	0.00029017	2.8784	0.0022175	770.381966439105	6.7023	0.12414	6.7023	6.6668	6.7909	0	366	31	1.07994477139643	0.0200589169906749	1.07994477139643	436.42991885896	0	8.10625852960897						169	15	3	NaN	NaN	NaN	0.0029573	1	19687	64.266	47.274	1	79757			1427	2422	1205	1229	1427	1427		
AQIFANTVDNAR	12	Unmodified	_AQIFANTVDNAR_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.338758	1318.66296	1.9331	0.0012765	0.26675	0.00017614	2.1998	0.0014526	660.339276022854	7.2255	0.266	7.2255	7.128	7.394	0	519	79	0.97729762293174	0.0524854956575742	0.97729762293174	395.535109453649	0	21.2421024901005						866	31	2	NaN	NaN	NaN	1.7867E-07	1	12934	153.33	124.68	1	927900			1428	536	1206	1230	1428	1428		
AQIHDLVLVGGSTR	14	Unmodified	_AQIHDLVLVGGSTR_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.275568	1464.80488	-0.8071	-0.0003949	-0.24037	-0.00011761	-1.0475	-0.0005125	489.275396354087	8.6979	0.20418	8.6979	8.6357	8.8399	0	762	70	0.812773098473386	0.0470225593197445	0.812773098473386	492.908320100994	0	28.5169511204037						434	24	4	NaN	NaN	NaN	0.043382	1	17425	40.861	31.346	1	118670			1429	618	1207	1231	1429	1429		
AQIHDLVLVGGSTR	14	Unmodified	_AQIHDLVLVGGSTR_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.409714	1464.80488	2.2338	0.0016383	1.0459	0.00076707	3.2797	0.0024054	733.41074981977	8.6979	0.38167	8.6979	8.6357	9.0174	0	411	136	1.04982941439551	0.0905834583598567	1.04982941439551	424.450542787564	0	36.6232814028689						1344	44	5	NaN	NaN	NaN	1.4611E-11	1	17428	176.97	146.38	1	1360100			1430	618	1207	1231	1430	1430		
AQIHEQNPSVEVVYYNK	17	Unmodified	_AQIHEQNPSVEVVYYNK_			0	0	0	Q9BWM7	Q9BWM7	Q9BWM7	SFXN3	Sideroflexin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.50253	2016.9905	2.0702	0.0020898	-2.0736	-0.0020933	-0.0034575	-3.4903E-06	1010.00209775962	7.456	0.04432	7.456	7.4294	7.4738	0	195	28	1.19381749893585	0.0179107814054655	1.19381749893585	481.427059189824	0	7.2228249523157						106	6	3	NaN	NaN	NaN	0.001434	1	31931	54.556	51.471	1	17231			1431	2781	1208	1232	1431	1431		
AQLADSFHLQQFFR	14	Unmodified	_AQLADSFHLQQFFR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.958239	1706.85289	0.14589	8.3152E-05	-1.4246	-0.00081198	-1.2787	-0.00072882	570.29166155868	15.437	0.17746	15.437	15.384	15.562	0	675	55	0.871889544407995	0.0366191214696816	0.871889544407995	528.058295307039	0	22.1783034134801						593	21	5	NaN	NaN	NaN	0.00017627	1	24677	83.438	72.65	1	207550			1432	1703	1209	1233	1432	1432		
AQLEPVASPAK	11	Unmodified	_AQLEPVASPAK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.811313	1109.60807	1.2098	0.00067245	-0.40074	-0.00022273	0.80911	0.00044971	555.810908844504	4.9021	0.19508	4.9021	4.8223	5.0174	0	663	52	0.880024865079826	0.0345583335678743	0.880024865079826	356.861515490723	0	14.0138532207802						441	23	3	NaN	NaN	NaN	0.0020383	1	6986	67.881	51.229	1	144130			1433	1816	1210	1234	1433	1433		
AQLEQSVEENK	11	Unmodified	_AQLEQSVEENK_			0	0	0	Q96SB3	Q96SB3	Q96SB3	PPP1R9B	Neurabin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.814781	1273.61501	2.9568	0.0018859	-2.0201	-0.0012885	0.93667	0.00059742	637.813633610283	3.8647	0.097522	3.8647	3.8292	3.9268	0	534	22	0.967195187796614	0.0141473237574097	0.967195187796614	391.589966151395	0	5.72785111133311						100	12	3	NaN	NaN	NaN	0.0066456	1	11587	36.514	19.044	1	16146			1434	2620	1211	1235	1434	1434		
AQLGVQAFADALLIIPK	17	Unmodified	_AQLGVQAFADALLIIPK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.522005	1767.02946	1.6079	0.0014223	1.2213	0.0010803	2.8292	0.0025025	885.024695704222	20.057	0.062073	20.057	20.057	20.119	0	231	73	1.16991841121525	0.047850764751828	1.16991841121525	472.245254770691	0	19.3152756419369						324	8	5	NaN	NaN	NaN	4.9535E-10	1	26332	149.02	142.99	1	171980			1435	1016	1212	1236	1435	1435		
AQLHDTNMELTDLK	14	Unmodified	_AQLHDTNMELTDLK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.603133	1627.78757	-0.57407	-0.00031206	-1.1164	-0.00060688	-1.6905	-0.00091894	543.603033051182	8.1922	0.10653	8.1922	8.1479	8.2544	0	759	28	0.814815566123307	0.0183796540051641	0.814815566123307	493.684337759402	0	11.1359523468078						282	13	4	NaN	NaN	NaN	0.00014976	1	22402	71.896	52.573	1	90127			1436	131	1213	1237	1436	1436		
AQLHDTNMELTDLK	14	Unmodified	_AQLHDTNMELTDLK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.901062	1627.78757	2.7793	0.0022649	0.3829	0.00031203	3.1622	0.0025769	814.900714639084	8.1922	0.088681	8.1922	8.1567	8.2454	0	333	40	1.10198982404297	0.0260424797711383	1.10198982404297	445.121547579879	0	10.5192159179999						214	11	3	NaN	NaN	NaN	0.00068855	1	22406	75.012	56.505	1	51710			1437	131	1213	1237	1437	1437		
AQLLQPTLEINPR	13	Unmodified	_AQLLQPTLEINPR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.92774	1491.84093	1.6535	0.001235	0.68538	0.00051193	2.3388	0.0017469	746.928453928672	12.493	0.25713	12.493	12.423	12.68	0	381	85	1.06991323971056	0.0562425139054787	1.06991323971056	432.497159084506	0	22.7352336442446						1417	30	5	NaN	NaN	NaN	4.181E-11	1	18308	147.19	115.05	1	1045100			1438	1608	1214	1238	1438	1438		
AQLMADFQAGR	11	Unmodified	_AQLMADFQAGR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.298047	1206.58154	0.81875	0.00049477	-0.39479	-0.00023857	0.42396	0.0002562	604.29789568614	9.1238	0.1597	9.1238	9.0706	9.2303	0	597	31	0.924688525662974	0.0202707209833614	0.924688525662974	374.603248936531	0	8.21193053434803						217	19	2	NaN	NaN	NaN	0.0057291	1	9638	63.397	55.215	1	90785			1439	1816	1215	1239	1439	1439		
AQLNIGNVLPVGTMPEGTIVCCLEEK	26	Unmodified	_AQLNIGNVLPVGTMPEGTIVCCLEEK_			0	0	0	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	948.1431	2841.40747	1.1887	0.0011271	-0.40201	-0.00038116	0.78672	0.00074593	948.477386081609	19.029	0.11527	19.029	18.993	19.109	0	438	106	1.03173026378327	0.0704148347299354	1.03173026378327	622.853514295689	0	42.5092960918548						978	14	6	NaN	NaN	NaN	7.0551E-14	1	37987	140.22	134.38	1	299670			1440	1416	1216	1240	1440	1440		
AQLSDYSDIVTTLDLAPPTK	20	Unmodified	_AQLSDYSDIVTTLDLAPPTK_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.55717	2147.09978	0.92415	0.00099305	-8.2538	-0.0088692	-7.3297	-0.0078762	1074.54592369742	17.557	0.25715	17.557	17.468	17.725	0	120	70	1.2434810169581	0.0455965602890394	1.2434810169581	501.246959907426	0	18.3799647243723						532	30	3	NaN	NaN	NaN	0.0013451	1	33984	43.904	41.802	1	169200			1441	246	1217	1241	1441	1441		
AQLTLLGTEMDYVEDK	16	Unmodified	_AQLTLLGTEMDYVEDK_			0	0	0	Q9BUE6	Q9BUE6	Q9BUE6	ISCA1	Iron-sulfur cluster assembly 1 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.448042	1824.88153	1.976	0.001805	-0.78741	-0.00071926	1.1886	0.0010858	913.445456361661	15.553	0.15961	15.553	15.508	15.668	0	252	40	1.15595906938629	0.0259423204238851	1.15595906938629	466.495299274288	0	10.469203322601						425	19	4	NaN	NaN	NaN	0.037586	1	27850	32.759	32.14	1	92890			1442	2744	1218	1242	1442	1442		
AQNDLIWNIK	10	Unmodified	_AQNDLIWNIK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.830037	1213.64552	0.79849	0.00048534	0.78684	0.00047826	1.5853	0.00096361	607.830981709773	12.298	0.21282	12.298	12.21	12.423	0	561	49	0.948993180460448	0.0323792954262402	0.948993180460448	384.424068682105	0	13.1164066772068						701	25	6	NaN	NaN	NaN	0.0035949	1	9836	76.605	61.842	1	418370			1443	611	1220	1243	1443	1443		
AQNLNPMVDVK	11	Unmodified	_AQNLNPMVDVK_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.821355	1227.62816	1.6313	0.0010029	0.018147	1.1157E-05	1.6494	0.0010141	614.821715458365	8.1479	0.18628	8.1479	8.0858	8.2721	0	531	58	0.969216233931596	0.0384158376205809	0.969216233931596	392.565867887904	0	15.5597338428697						491	22	4	NaN	NaN	NaN	0.00091675	1	10234	70.389	61.915	1	127890			1444	3172	1221	1244	1444	1444		
AQPAQPADEPAEK	13	Unmodified	_AQPAQPADEPAEK_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.328056	1350.64156	2.6387	0.0017846	-1.4803	-0.0010012	1.1584	0.00078344	676.327009734464	2.6232	0.33696	2.6232	2.5611	2.8981	0	588	52	0.93076847747433	0.034438755237733	0.93076847747433	376.611185856111	0	13.9347439920672						928	39	4	NaN	NaN	NaN	0.00019255	1	13900	81.799	71.097	1	270990			1445	841	1222	1245	1445	1445		
AQPLEDLAGFTELSETSGHTQESLTAGK	28	Unmodified	_AQPLEDLAGFTELSETSGHTQESLTAGK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	973.140235	2916.39888	1.6222	0.0015786	0.15101	0.00014696	1.7732	0.0017256	973.474432825242	15.242	0.070912	15.242	15.207	15.278	0	420	25	1.04379886199097	0.0160848033247041	1.04379886199097	630.060367612107	0	9.7091474849866						168	9	4	NaN	NaN	NaN	0.059613	1	38095	12.375	12.226	1	32856			1446	1074	1223	1246	1446	1446		
AQPLSLEELLAK	12	Unmodified	_AQPLSLEELLAK_			0	0	0	Q9BUQ8	Q9BUQ8	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.37956	1310.74457	0.27843	0.00018276	-0.77252	-0.00050706	-0.49409	-0.00032431	656.378971914127	15.881	0.14188	15.881	15.837	15.978	0	531	64	0.969216233931596	0.0424185110568702	0.969216233931596	392.288959378643	0	17.1688349599657						371	17	2	NaN	NaN	NaN	0.057641	1	12693	28.328	22.064	1	180920			1447	2749	1224	1247	1447	1447		
AQQALSELHTVEK	13	Unmodified	_AQQALSELHTVEK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.385905	1452.75726	1.8276	0.0013293	-0.047726	-3.4715E-05	1.7798	0.0012946	727.385863075097	5.8332	0.12411	5.8332	5.7978	5.9219	0	435	28	1.03374239103424	0.0181091469845289	1.03374239103424	417.978924890085	0	7.32217412473244						235	15	3	NaN	NaN	NaN	0.00042144	1	17053	79.889	68.534	1	71131			1448	1991	1225	1248	1448	1448		
AQQEDALAQQAFEEAR	16	Unmodified	_AQQEDALAQQAFEEAR_			0	0	0	Q13951	Q13951	Q13951	CBFB	Core-binding factor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.286861	1803.83875	0.3439	0.00020713	1.6441	0.00099022	1.988	0.0011973	602.287378719964	10.472	0.097572	10.472	10.427	10.525	0	627	28	0.90440375274676	0.0182676885200254	0.90440375274676	547.513438195162	0	11.059004254572						229	12	4	NaN	NaN	NaN	0.0072886	1	27314	57.042	56.782	1	53786			1449	1711	1226	1249	1449	1449		
AQQEDALAQQAFEEAR	16	Unmodified	_AQQEDALAQQAFEEAR_			0	0	0	Q13951	Q13951	Q13951	CBFB	Core-binding factor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.926654	1803.83875	2.4932	0.0022511	1.7613	0.0015903	4.2544	0.0038414	903.430285447673	10.472	0.15964	10.472	10.401	10.56	0	318	52	1.11199926528787	0.0340227398849529	1.11199926528787	448.794491002651	0	13.7313204296319						547	19	4	NaN	NaN	NaN	1.6502E-08	1	27315	129.04	126.91	1	136880			1450	1711	1226	1249	1450	1450		
AQQELEEQTR	10	Unmodified	_AQQELEEQTR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.299298	1230.58404	2.5258	0.0015566	-2.9228	-0.0018013	-0.39701	-0.00024468	616.298479701904	2.6941	0.30147	2.6941	2.6321	2.9336	0	606	52	0.918606045818476	0.0344769526882287	0.918606045818476	372.057078102945	0	13.9639776348812						477	35	3	NaN	NaN	NaN	0.0064365	1	10318	49.16	37.202	1	100570			1451	846	1227	1250	1451	1451		
AQQEQELAADAFK	13	Unmodified	_AQQEQELAADAFK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.854438	1447.69432	2.0308	0.001472	-0.14811	-0.00010736	1.8827	0.0013647	724.854527853517	8.343	0.28381	8.343	8.2721	8.5559	0	486	70	0.999498404980629	0.0463685348417228	0.999498404980629	404.146192169015	0	18.7490712334871						1172	33	5	NaN	NaN	NaN	9.214E-17	1	16913	202.72	178.6	1	774970			1452	694	1228	1251	1452	1452		
AQQEVLQALEPQVDYLR	17	Unmodified	_AQQEVLQALEPQVDYLR_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.526	1999.03745	1.0758	0.0010764	1.0085	0.0010091	2.0844	0.0020855	1001.02804516593	15.393	0.079812	15.393	15.349	15.429	0	156	31	1.21966378336455	0.0198694832228234	1.21966378336455	491.880192778947	0	8.01319623601489						144	10	3	NaN	NaN	NaN	0.068956	1	31624	25.705	23.158	1	22263			1453	3311	1229	1252	1453	1453		
AQQGIVFLDEVDK	13	Unmodified	_AQQGIVFLDEVDK_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.382831	1460.75111	1.4251	0.0010423	-2.1431	-0.0015674	-0.71806	-0.00052518	731.381174523607	13.584	0.14188	13.584	13.54	13.682	0	459	34	1.01763759082241	0.022160929987054	1.01763759082241	411.445946257399	0	8.95999213344572						275	17	3	NaN	NaN	NaN	4.1068E-05	1	17300	70.195	59.945	1	94533			1454	379	1230	1253	1454	1454		
AQQIHSQTSQQYPLYDLDLGK	21	Unmodified	_AQQIHSQTSQQYPLYDLDLGK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	811.739677	2432.1972	1.2667	0.0010282	0.60805	0.00049358	1.8748	0.0015218	812.074343873208	11.713	0.22162	11.713	11.58	11.802	0	531	49	0.969216233931596	0.0323300376824983	0.969216233931596	585.593158023456	0	19.5335655787701						825	26	5	NaN	NaN	NaN	8.8336E-06	1	36496	85.513	82.439	1	255200			1455	718	1231	1254	1455	1455		
AQQLAEVEVK	10	Unmodified	_AQQLAEVEVK_			0	0	0	Q14764	Q14764	Q14764	MVP	Major vault protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.808771	1113.60299	0.51857	0.00028926	-2.0068	-0.0011194	-1.4882	-0.00083014	558.308573336231	5.8421	0.097511	5.8421	5.7978	5.8953	0	627	28	0.90440375274676	0.0182727556379993	0.90440375274676	366.731337061382	0	7.40951382230259						142	12	2	NaN	NaN	NaN	0.037768	1	7089	36.24	23.413	1	44315			1456	1774	1232	1255	1456	1456		
AQQLIQTYELNETAK	15	Unmodified	_AQQLIQTYELNETAK_			0	0	0	Q8N3E9	Q8N3E9	Q8N3E9	PLCD3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.454516	1748.89448	2.7209	0.002382	-3.4456	-0.0030164	-0.72468	-0.00063442	875.451262056209	10.099	0.070931	10.099	10.081	10.152	0	351	28	1.08996939197032	0.0180368604002248	1.08996939197032	440.008840882094	0	7.28128523270601						123	9	3	NaN	NaN	NaN	0.0045104	1	25861	44.045	34.466	1	24345			1457	2247	1233	1256	1457	1457		
AQQLLDAVEQR	11	Unmodified	_AQQLLDAVEQR_			0	0	0	Q6ZSJ8	Q6ZSJ8	Q6ZSJ8	C1orf122	Uncharacterized protein C1orf122	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.841133	1269.66771	1.1986	0.0007621	1.0875	0.00069146	2.286	0.0014536	635.841215858141	8.9819	0.13302	8.9819	8.9198	9.0528	0	510	31	0.983355730988811	0.0201895069753196	0.983355730988811	398.146177126741	0	8.17443247339816						215	16	3	NaN	NaN	NaN	0.00043816	1	11504	72.365	62.277	1	66177			1458	2100	1234	1257	1458	1458		
AQQMHTGPVLDVCWSDDGSK	20	Unmodified	_AQQMHTGPVLDVCWSDDGSK_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.333377	2229.9783	0.41167	0.00030642	0.46575	0.00034668	0.87742	0.0006531	744.668347604057	10.64	0.079778	10.64	10.596	10.676	0	639	46	0.896281965493857	0.0304588219189615	0.896281965493857	541.805608387653	0	18.4124652463369						435	10	5	NaN	NaN	NaN	1.3179E-07	1	34982	100.98	94.459	1	140120			1459	1462	1235	1258	1459	1459		
AQQNLSWEEIAK	12	Unmodified	_AQQNLSWEEIAK_			0	0	0	Q5HYK3	Q5HYK3	Q5HYK3	COQ5	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.859523	1415.70449	1.5729	0.001115	0.79179	0.00056127	2.3647	0.0016762	709.361313821906	10.339	0.11525	10.339	10.268	10.383	0	453	25	1.02166545906632	0.016107024389808	1.02166545906632	413.197760122467	0	6.51425213708291						187	14	3	NaN	NaN	NaN	0.03678	1	15962	39.293	36.19	1	59008			1460	1963	1236	1259	1460	1460		
AQQQLEQEFNQK	12	Unmodified	_AQQQLEQEFNQK_			0	0	0	Q15276	Q15276	Q15276	RABEP1	Rab GTPase-binding effector protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.865337	1489.71612	2.1009	0.001567	-1.1738	-0.00087552	0.92711	0.0006915	746.366050406548	6.0815	0.19509	6.0815	6.0195	6.2146	0	447	49	1.02569221487577	0.0322274067567843	1.02569221487577	414.626883409247	0	13.0276402902657						349	23	4	NaN	NaN	NaN	0.0030574	1	18210	50.297	17.196	1	78897			1461	1827	1237	1260	1461	1461		
AQQSLELIQSK	11	Unmodified	_AQQSLELIQSK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.845884	1243.67722	0.97127	0.00060495	-0.75567	-0.00047067	0.2156	0.00013429	622.845247636038	7.5624	0.15959	7.5624	7.5092	7.6688	8.8818E-16	555	34	0.953040030838688	0.0222561395374655	0.953040030838688	385.958561257678	0	9.01320754330862						305	19	3	NaN	NaN	NaN	0.00039655	1	10744	94.804	74.57	1	80277			1462	2167	1238	1261	1462	1462		
AQQVSQGLDVLTAK	14	Unmodified	_AQQVSQGLDVLTAK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.401555	1456.78856	2.5609	0.0018679	-0.53319	-0.00038891	2.0277	0.001479	729.401279380669	9.8066	0.20393	9.8066	9.7534	9.9573	0	432	61	1.035754240522	0.0402175744908813	1.035754240522	418.781457047159	0	16.2609756110732						771	24	5	NaN	NaN	NaN	1.7911E-08	1	17162	147.02	129.55	1	382570			1463	753	1239	1262	1463	1463		
AQSDIEHLFQHNR	13	Unmodified	_AQSDIEHLFQHNR_			0	0	0	Q8TCG1	Q8TCG1	Q8TCG1	KIAA1524	Protein CIP2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.889678	1593.7648	0.889	0.00070933	3.214	0.0025644	4.103	0.0032737	797.892679892955	20.066	0.12412	20.066	19.995	20.119	0	408	49	1.0518390438467	0.0321518628889854	1.0518390438467	424.940895030094	0	12.9892890674265						277	15	4	NaN	NaN	NaN	0.010534	1	21395	37.591	12.77	1	72920			1464	2343	1240	1263	1464	1464		
AQSLAEQTSDTAGLESSTR	19	Unmodified	_AQSLAEQTSDTAGLESSTR_			0	0	0	Q12986	Q12986	Q12986	NFX1	Transcriptional repressor NF-X1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.463798	1950.91304	1.8006	0.0017583	-1.1498	-0.0011227	0.65084	0.00063552	976.461778441083	7.0747	0.053302	7.0747	7.0481	7.1014	0	255	19	1.15396378101328	0.0119725537119737	1.15396378101328	465.463096663709	0	4.82925202457784						75	7	3	NaN	NaN	NaN	2.1766E-14	1	30730	102.55	92.53	1	11975			1465	1616	1241	1264	1465	1465		
AQSLLSTDR	9	Unmodified	_AQSLLSTDR_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.764363	989.514173	1.2492	0.00061933	-1.0646	-0.00052778	0.18466	9.1546E-05	495.763834435461	5.044	0.30149	5.044	4.9997	5.3012	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	352.435840728399	0	9.0913640343403						345	35	2	NaN	NaN	NaN	0.0016636	1	4040	74.486	57.091	1	97839			1466	63	1242	1265	1466	1466		
AQSLLSTDREASIDILHSIVK	21	Unmodified	_AQSLLSTDREASIDILHSIVK_			0	0	1	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.088418	2295.24342	1.3053	0.001	1.3779	0.0010556	2.6832	0.0020556	766.42492192023	15.313	0.13301	15.313	15.269	15.402	0	426	55	1.03977710643793	0.0361658587577258	1.03977710643793	628.43833998204	0	21.8585426636212						331	16	5	NaN	NaN	NaN	0.00068889	1	35604	53.782	49.409	1	86937			1467	63	1243	1266	1467	1467		
AQSSQDAVSSMNLFDLGGQYLR	22	Unmodified	_AQSSQDAVSSMNLFDLGGQYLR_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1194.06844	2386.12232	0.71731	0.00085652	-0.33834	-0.000404	0.37898	0.00045252	1194.56937240255	18.337	0.10638	18.337	18.293	18.399	0	63	55	1.28111162701928	0.0356280865496466	1.28111162701928	516.083187869033	0	14.3524233926407						489	13	5	NaN	NaN	NaN	4.4944E-12	1	36276	146.48	141.38	1	104300			1468	3225	1244	1267	1468	1468		
AQTAHIVLEDGTK	13	Unmodified	_AQTAHIVLEDGTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.580658	1381.72014	-0.34732	-0.00016032	0.69658	0.00032153	0.34925	0.00016121	461.581074851896	4.7869	0.4522	4.7869	4.7071	5.1593	0	816	97	0.775960037304758	0.0655093087527748	0.775960037304758	470.847253112403	0	39.7506013153381						1461	52	4	NaN	NaN	NaN	0.002099	1	14881	90.689	82.215	1	622120			1469	922	1245	1268	1469	1469		
AQTAHIVLEDGTK	13	Unmodified	_AQTAHIVLEDGTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.867348	1381.72014	2.6983	0.0018669	-0.10072	-6.9684E-05	2.5976	0.0017972	691.867510709983	4.7869	0.399	4.7869	4.6982	5.0972	0	477	61	1.0055473068722	0.0403176730241901	1.0055473068722	406.775766192351	0	16.3097769974855						1126	46	5	NaN	NaN	NaN	8.0048E-33	1	14884	252.59	194.7	1	821830			1470	922	1245	1268	1470	1470		
AQTEGINISEEALNHLGEIGTK	22	Unmodified	_AQTEGINISEEALNHLGEIGTK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1162.59006	2323.16557	0.46386	0.00053928	-1.4662	-0.0017046	-1.0023	-0.0011653	1162.58782130209	14.294	0.053222	14.294	14.267	14.32	0	60	22	1.28308947459206	0.0138487246935988	1.28308947459206	516.961072482391	0	5.57969784016223						38	7	2	NaN	NaN	NaN	0.017337	1	35840	22.906	21.48	1	6475.4			1471	3331	1246	1269	1471	1471		
AQTEGINISEEALNHLGEIGTK	22	Unmodified	_AQTEGINISEEALNHLGEIGTK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.395799	2323.16557	1.6139	0.0012514	-0.83996	-0.0006513	0.77394	0.00060011	775.729639073728	14.294	0.12411	14.294	14.249	14.373	0	531	127	0.969216233931596	0.0847726494017831	0.969216233931596	585.749217508519	0	51.2326468695147						1429	15	5	NaN	NaN	NaN	3.4121E-23	1	35841	179.9	176.99	1	491370			1472	3331	1246	1269	1472	1472		
AQTGAPCLSFDIVR	14	Unmodified	_AQTGAPCLSFDIVR_			0	0	0	Q9BQ67	Q9BQ67	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.887758	1533.76096	1.8643	0.0014316	-2.9486	-0.0022642	-1.0843	-0.0008326	767.886519313023	13.469	0.18625	13.469	13.371	13.558	0	426	43	1.03977710643793	0.0281561811759454	1.03977710643793	420.209466615087	0	11.378875146034						517	22	5	NaN	NaN	NaN	0.00012608	1	19543	87.573	74.398	1	217420			1473	2692	1247	1270	1473	1473		
AQTLPTSVVTITSESSPGK	19	Unmodified	_AQTLPTSVVTITSESSPGK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.00457	1901.99459	2.194	0.0020887	-0.26423	-0.00025155	1.9298	0.0018371	952.00427393445	11.456	0.15076	11.456	11.403	11.553	0	213	55	1.18187287897418	0.0358584890217997	1.18187287897418	476.807108802007	0	14.4665156301181						639	18	5	NaN	NaN	NaN	1.8473E-19	1	29647	146.75	135.54	1	227780			1474	1511	1248	1271	1474	1474		
AQTYELQESNVQLK	14	Unmodified	_AQTYELQESNVQLK_			0	0	0	Q9P0V9	Q9P0V9	Q9P0V9	SEPT10	Septin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.920309	1649.82606	2.7502	0.0022714	-2.9371	-0.0024258	-0.18694	-0.00015439	825.917686851567	8.4938	0.12414	8.4938	8.4584	8.5825	0	351	61	1.08996939197032	0.0401067904857699	1.08996939197032	440.21657237992	0	16.1983207665027						424	15	4	NaN	NaN	NaN	1.7065E-06	1	23037	121.96	113.59	1	128110			1475	3149	1249	1272	1475	1475		
AQVAMSTLPVEDEESSESR	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AQVAMSTLPVEDEESSESR_			1	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.97842	2105.94229	2.1488	0.0022648	-0.065258	-6.8781E-05	2.0836	0.0021961	1054.47938152131	14.125	0.14188	14.125	14.063	14.205	0	165	58	1.21370334790578	0.0377442619775126	1.21370334790578	489.305013565518	0	15.2166150408946						620	17	4	NaN	NaN	NaN	1.2889E-05	1	33396	61.503	58.956	1	134430			1476	1459	1250	1273	1476	1476		
AQVDSSFLSLYDSHVAK	17	Unmodified	_AQVDSSFLSLYDSHVAK_			0	0	0	Q8N2F6	Q8N2F6	Q8N2F6	ARMC10	Armadillo repeat-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.965248	1865.91594	1.529	0.0014281	0.53884	0.00050326	2.0679	0.0019313	934.466844165634	12.76	0.070976	12.76	12.724	12.795	0	144	31	1.22760721615852	0.0198558605282475	1.22760721615852	495.327214308461	0	8.01164081939078						157	9	3	NaN	NaN	NaN	0.00021496	1	28847	47.27	44.881	1	28982			1477	2242	1251	1274	1477	1477		
AQVEEFLAQHGSEYQSVK	18	Unmodified	_AQVEEFLAQHGSEYQSVK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.49744	2048.98033	1.7782	0.0018236	-0.15016	-0.00015399	1.6281	0.0016696	1025.99842318049	9.6647	0.079814	9.6647	9.6292	9.709	0	120	55	1.2434810169581	0.0357111665991665	1.2434810169581	501.401184566715	0	14.3995935530109						424	10	5	NaN	NaN	NaN	6.0113E-07	1	32523	80.026	78.055	1	116360			1478	1531	1252	1275	1478	1478		
AQVEEFLAQHGSEYQSVK	18	Unmodified	_AQVEEFLAQHGSEYQSVK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.000721	2048.98033	1.3432	0.00091874	0.74197	0.00050751	2.0852	0.0014263	684.335340023743	9.6647	0.10641	9.6647	9.6292	9.7356	0	582	67	0.934820374997243	0.0445462106400273	0.934820374997243	565.41091185297	0	26.9430515757067						545	13	5	NaN	NaN	NaN	3.1059E-05	1	32525	54.912	49.83	1	171080			1479	1531	1252	1275	1479	1479		
AQVEIVTDGEEPAEMIQVLGPK	22	Unmodified	_AQVEIVTDGEEPAEMIQVLGPK_			0	0	0	P40121	P40121	P40121	CAPG	Macrophage-capping protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.070036	2352.18828	0.42893	0.00033674	0.9257	0.00072674	1.3546	0.0010635	785.404883563151	16.883	0.20398	16.883	16.812	17.016	0	411	28	1.04982941439551	0.0180891625147663	1.04982941439551	634.421549604135	0	10.9314469153705						268	24	3	NaN	NaN	NaN	0.017216	1	36063	31.138	29.713	1	61260			1480	1014	1253	1276	1480	1480		
AQVLVEDISDILEEHAEK	18	Unmodified	_AQVLVEDISDILEEHAEK_			0	0	0	Q5VV41	Q5VV41	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.016148	2037.02662	0.090774	6.1728E-05	-0.09158	-6.2276E-05	-0.0008064	-5.4837E-07	680.350182239986	17.442	0.10639	17.442	17.406	17.513	0	573	22	0.940896116921038	0.0141747684454057	0.940896116921038	569.108183185773	0	8.57371666432414						204	13	4	NaN	NaN	NaN	0.0015712	1	32291	84.58	72.9	1	46765			1481	2010	1254	1277	1481	1481		
AQVQLQLFK	9	Unmodified	_AQVQLQLFK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.818941	1073.62333	-0.13151	-7.0727E-05	-0.82256	-0.00044239	-0.95407	-0.00051311	537.818606293946	11.802	0.13298	11.802	11.758	11.89	0	651	37	0.888155670855968	0.0243788876669334	0.888155670855968	360.306721047444	0	9.89001969619943						186	16	2	NaN	NaN	NaN	0.0036875	1	6054	58.286	37.011	1	40660			1482	1764	1255	1278	1482	1482		
AQYDELAR	8	Unmodified	_AQYDELAR_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.237981	964.461409	1.0701	0.00051709	1.2259	0.00059242	2.296	0.0011095	483.238708668245	4.6982	0.35468	4.6982	4.645	4.9997	0	708	52	0.849494101904619	0.0346400029303776	0.849494101904619	345.116145312402	0	14.0728749712785						802	41	4	NaN	NaN	NaN	0.0027234	1	3525	89.123	25.821	1	723550			1483	536	1256	1279	1483	1483		
AQYEDIANR	9	Unmodified	_AQYEDIANR_			0	0	0	P05787;CON__P05787;CON__Q8BGZ7;O95678;CON__O95678;CON__Q5XQN5;CON__Q922U2	P05787	P05787	KRT8;KRT75	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.259445	1078.50434	1.9488	0.0010528	0.57722	0.00031185	2.526	0.0013647	540.259896563126	4.3701	0.29259	4.3701	4.3169	4.6095	0	678	52	0.869855008346864	0.0345919271139168	0.869855008346864	352.862276326092	0	14.0324376209783						1047	34	5	NaN	NaN	NaN	9.0472E-07	1	6165	154.71	139.94	1	1292000		+	1484	28	1257	1280	1484	1484		
AQYEQTLAELHR	12	Unmodified	_AQYEQTLAELHR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.91604	1457.72629	-1.6072	-0.00078256	0.49392	0.0002405	-1.1133	-0.00054206	486.916257911038	7.527	0.17733	7.527	7.4915	7.6688	-8.8818E-16	795	31	0.790287188799094	0.0204573895443732	0.790287188799094	479.293426194856	0	12.4069989551837						295	21	3	NaN	NaN	NaN	0.00040685	1	17190	118.91	82.697	1	161370			1485	3268	1258	1281	1485	1485		
AQYEQTLAELHR	12	Unmodified	_AQYEQTLAELHR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.870422	1457.72629	1.6047	0.0011712	1.1738	0.00085674	2.7786	0.002028	729.871361458953	7.5358	0.13301	7.5358	7.4649	7.5979	8.8818E-16	411	37	1.04982941439551	0.0241205492413457	1.04982941439551	424.469827765169	0	9.75248477674882						299	16	4	NaN	NaN	NaN	2.3288E-07	1	17194	124.46	106.99	1	87976			1486	3268	1258	1281	1486	1486		
AQYYLPDGSTIEIGPSR	17	Unmodified	_AQYYLPDGSTIEIGPSR_			0	0	0	P61163	P61163	P61163	ACTR1A	Alpha-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.965248	1865.91594	1.8947	0.0017696	-3.2962	-0.0030785	-1.4015	-0.001309	934.461844523679	14.648	0.25715	14.648	14.498	14.755	0	276	127	1.13998907770044	0.0837159442877091	1.13998907770044	459.974186177212	0	33.7785458624496						947	30	3	NaN	NaN	NaN	0.0020803	1	28844	69.327	36.226	1	366380			1487	1332	1259	1282	1487	1487		
ARDDLITDLLNEAK	14	Unmodified	_ARDDLITDLLNEAK_			0	0	1	P36543	P36543	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.61766	1585.83115	-1.42	-0.00075206	0.22675	0.00012009	-1.1933	-0.00063197	529.61742393541	16.369	0.11526	16.369	16.324	16.44	0	705	43	0.851531465363931	0.0285330039304067	0.851531465363931	516.044961029379	0	17.2915664308717						247	14	4	NaN	NaN	NaN	0.0018969	1	21142	69.641	63.613	1	65801			1488	986	1260	1283	1488	1488		
ARDDLITDLLNEAK	14	Unmodified	_ARDDLITDLLNEAK_			0	0	1	P36543	P36543	P36543	ATP6V1E1	V-type proton ATPase subunit E 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.922852	1585.83115	1.4302	0.0011354	1.9087	0.0015154	3.3389	0.0026508	793.92397101795	16.36	0.16849	16.36	16.307	16.475	0	336	64	1.09998710857178	0.0420918249195401	1.09998710857178	444.411775586045	0	17.0057471622896						619	20	4	NaN	NaN	NaN	0.0026724	1	21146	79.795	71.83	1	194930			1489	986	1260	1283	1489	1489		
ARFEELCSDLFR	12	Unmodified	_ARFEELCSDLFR_			0	0	1	P0DMV8;P0DMV9;P17066;P48741	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.917164	1541.72966	-1.3841	-0.0007127	-0.64075	-0.00032993	-2.0249	-0.0010426	514.917030567253	12.467	0.22168	12.467	12.431	12.653	0	795	76	0.790287188799094	0.0511043713404694	0.790287188799094	479.048151574458	0	30.9779216657025						889	26	5	NaN	NaN	NaN	0.00033745	1	19767	127.93	117.14	1	384850			1490	618;734	1261	1284	1490	1490		
ARFEELCSDLFR	12	Unmodified	_ARFEELCSDLFR_			0	0	1	P0DMV8;P0DMV9;P17066;P48741	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.872108	1541.72966	2.2973	0.0017732	1.5066	0.0011629	3.8038	0.0029361	771.873663191477	12.476	0.28372	12.476	12.414	12.697	0	369	91	1.07793901817685	0.0601602214411672	1.07793901817685	435.611840245407	0	24.3116765694982						1628	33	6	NaN	NaN	NaN	0.00047567	1	19771	117.99	67.87	1	1528500			1491	618;734	1261	1284	1491	1491		
ARFEELNADLFR	12	Unmodified	_ARFEELNADLFR_			0	0	1	P11142;P54652	P11142	P11142	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.256285	1479.74703	-1.828	-0.00090348	-0.26128	-0.00012914	-2.0892	-0.0010326	494.256188196906	12.068	0.19509	12.068	12.024	12.219	0	777	52	0.802556497112065	0.0347316235203058	0.802556497112065	486.666507607765	0	21.0610941198506						593	23	4	NaN	NaN	NaN	0.0058737	1	17898	70.389	57.793	1	232250			1492	640	1262	1285	1492	1492		
ARPFPDGLAEDIDK	14	Unmodified	_ARPFPDGLAEDIDK_			0	0	1	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.263217	1542.76782	-0.94732	-0.00048812	-1.1854	-0.00061081	-2.1328	-0.0010989	515.262628030829	10.161	0.39014	10.161	10.01	10.401	0	828	34	0.767766820543916	0.0225297797973347	0.767766820543916	465.39420523763	0	13.656788340412						462	45	3	NaN	NaN	NaN	0.015756	1	19816	42.446	40.944	1	127640			1493	679	1263	1286	1493	1493		
ARPFPDGLAEDIDK	14	Unmodified	_ARPFPDGLAEDIDK_			0	0	1	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.263217	1542.76782	-1.5034	-0.00077466	-0.30139	-0.00015529	-1.8048	-0.00092995	515.263125721928	9.514	0.20393	9.514	9.4076	9.6115	0	843	31	0.757518876820989	0.0205058884733159	0.757518876820989	459.1822457332	0	12.4299739690274						293	24	2	NaN	NaN	NaN	0.00093155	1	19817	54.199	51.528	1	65206			1494	679	1263	1286	1494	1494		
ASADLMSYCEEHAR	14	Unmodified	_ASADLMSYCEEHAR_			0	0	0	Q9UBI6	Q9UBI6	Q9UBI6	GNG12	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.345597	1638.67664	1.9845	0.001628	-0.82869	-0.00067981	1.1558	0.0009482	820.344821940063	6.321	0.079823	6.321	6.2855	6.3653	0	357	25	1.08596037261705	0.0160404989244494	1.08596037261705	438.622253917452	0	6.47879975145599						172	10	4	NaN	NaN	NaN	1.0534E-05	1	22715	72.846	66.818	1	35635			1495	3175	1264	1287	1495	1495		
ASAEGPLLGPEAAPSGEGAGSK	22	Unmodified	_ASAEGPLLGPEAAPSGEGAGSK_			0	0	0	Q9BRJ6	Q9BRJ6	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.981626	1951.9487	2.7695	0.0027058	-1.3516	-0.0013205	1.4179	0.0013853	977.481791596688	8.0947	0.14199	8.0947	8.0502	8.1922	0	276	76	1.13998907770044	0.0499371538919759	1.13998907770044	459.824534477832	0	20.1425864428849						692	17	5	NaN	NaN	NaN	8.243E-08	1	30750	62.304	51.095	1	167280			1496	2708	1265	1288	1496	1496		
ASAELIEEEVAK	12	Unmodified	_ASAELIEEEVAK_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.835182	1287.65581	1.5454	0.00099652	-0.70258	-0.00045305	0.84281	0.00054348	644.834929673666	8.9996	0.28392	8.9996	8.8753	9.1592	0	510	67	0.983355730988811	0.0444353690970316	0.983355730988811	398.086333150326	0	17.9885188935964						548	33	4	NaN	NaN	NaN	2.17E-07	1	11994	141.29	107.57	1	225620			1497	664	1266	1289	1497	1497		
ASAETVDPASLWEY	14	Unmodified	_ASAETVDPASLWEY_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.854103	1537.69365	0.73944	0.00056926	-0.48235	-0.00037134	0.25709	0.00019792	769.85339740276	17.291	0.23056	17.291	17.184	17.415	0	465	58	1.01360860968299	0.0382726935815298	1.01360860968299	409.624502107387	0	15.4669493756036						1053	27	4	NaN	NaN	NaN	2.4929E-08	1	19649	140.05	128.69	1	536160			1498	1898	1267	1290	1498	1498		
ASAFNSWFENAEEDLTDPVR	20	Unmodified	_ASAFNSWFENAEEDLTDPVR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1149.5191	2297.02366	-0.4569	-0.00052521	1.6914	0.0019444	1.2346	0.0014191	1150.02150274911	19.268	0.062083	19.268	19.233	19.295	0	87	55	1.26527909472281	0.0356622608340909	1.26527909472281	509.819702595551	0	14.3694172203994						246	8	3	NaN	NaN	NaN	1.7045E-05	1	35607	73.262	69.503	1	46643			1499	1703	1268	1291	1499	1499		
ASAGPQPLLVQSCK	14	Unmodified	_ASAGPQPLLVQSCK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.384851	1454.75515	1.8083	0.0013171	-2.4482	-0.0017833	-0.63995	-0.00046613	728.38322657406	7.2077	0.16847	7.2077	7.128	7.2964	0	453	52	1.02166545906632	0.0342250726954365	1.02166545906632	413.090448130211	0	13.8382388203351						312	20	2	NaN	NaN	NaN	0.00019096	1	17099	66.953	52.591	1	123670			1500	3406	1269	1292	1500	1500		
ASALEQFVNSVR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASALEQFVNSVR_			1	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.854241	1361.69393	0.61991	0.00042269	-1.1968	-0.00081604	-0.57689	-0.00039335	681.853553048593	19.969	0.070951	19.969	19.951	20.022	0	465	49	1.01360860968299	0.0322452204768515	1.01360860968299	410.096560806795	0	13.0461145393678						232	9	4	NaN	NaN	NaN	5.621E-09	1	14258	122.51	80.434	1	110270			1501	3306	1270	1293	1501	1501		
ASALQDMMR	9	Unmodified	_ASALQDMMR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.741519	1021.46849	-0.24277	-0.00012423	1.3216	0.00067633	1.0789	0.00055209	511.742168114255	8.5027	0.19507	8.5027	8.414	8.6091	0	729	52	0.835224628594324	0.0346544452198196	0.835224628594324	339.05272303567	0	14.0676934261923						548	23	4	NaN	NaN	NaN	1.9276E-05	1	4763	94.806	86.043	1	146050			1502	209	1271	1294	1502	1502		
ASASYHISNLLEK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASASYHISNLLEK_			1	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.880456	1473.74636	2.0895	0.0015418	1.8567	0.0013701	3.9463	0.0029119	737.881956673583	12.236	0.25716	12.236	12.183	12.44	0	348	46	1.09197348738011	0.0300614391365961	1.09197348738011	441.464504154425	0	12.1532788808325						713	30	5	NaN	NaN	NaN	4.1094E-24	1	17705	201.66	185.37	1	446030			1503	2175	1272	1295	1503	1503		
ASCASIDIEDATQHLR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASCASIDIEDATQHLR_			1	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.928339	1827.84213	1.6454	0.0015054	-0.32949	-0.00030146	1.3159	0.001204	914.928183169317	13.717	0.14186	13.717	13.682	13.824	0	189	46	1.1977968526266	0.0298472092249094	1.1977968526266	483.373319559678	0	12.0449010790099						507	17	5	NaN	NaN	NaN	1.2316E-06	1	27914	89.382	84.288	1	169930			1504	2063	1273	1296	1504	1504		
ASDAFHFFQSGQAK	14	Unmodified	_ASDAFHFFQSGQAK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.244157	1539.71064	-0.7703	-0.00039612	-0.40486	-0.0002082	-1.1752	-0.00060432	514.243946657953	9.8332	0.14186	9.8332	9.7889	9.9307	0	798	49	0.788241307691771	0.0327363864378913	0.788241307691771	477.813568374121	0	19.8440369299696						472	17	4	NaN	NaN	NaN	3.8186E-05	1	19709	63.212	51.193	1	138220			1505	307	1274	1297	1505	1505		
ASDAFHFFQSGQAK	14	Unmodified	_ASDAFHFFQSGQAK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.862597	1539.71064	2.4936	0.0019222	0.78642	0.00060622	3.28	0.0025284	770.862911144854	9.8332	0.10639	9.8332	9.7977	9.9041	0	381	31	1.06991323971056	0.0200699816330834	1.06991323971056	432.373547589767	0	8.1106849010535						190	13	3	NaN	NaN	NaN	8.2541E-06	1	19710	128.57	118.55	1	41186			1506	307	1274	1297	1506	1506		
ASDTPSGLSPTDTMGTAMR	19	Unmodified	_ASDTPSGLSPTDTMGTAMR_			0	0	0	Q9BWH6	Q9BWH6	Q9BWH6	RPAP1	RNA polymerase II-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.427315	1894.84008	1.9694	0.0018679	1.1331	0.0010746	3.1025	0.0029425	948.429887557661	9.5938	0.07093	9.5938	9.5494	9.6204	0	252	34	1.15595906938629	0.0219542113279454	1.15595906938629	466.36535722568	0	8.85730635255197						140	9	3	NaN	NaN	NaN	0.050022	1	29490	33.526	33.357	1	20938			1507	2779	1275	1298	1507	1507		
ASDVVLGFAELEGYLQK	17	Unmodified	_ASDVVLGFAELEGYLQK_			0	0	0	Q96C23	Q96C23	Q96C23	GALM	Aldose 1-epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.980367	1837.94618	0.5759	0.00052981	0.6914	0.00063607	1.2673	0.0011659	919.980784515697	19.375	0.026607	19.375	19.366	19.392	0	138	25	1.23157729878518	0.0158781542364044	1.23157729878518	496.984905674791	0	6.40739561637992						64	4	3	NaN	NaN	NaN	0.00015476	1	28183	77.157	68.783	1	10793			1508	2489	1276	1299	1508	1508		
ASEAGEVPFNHEILR	15	Unmodified	_ASEAGEVPFNHEILR_			0	0	0	Q7L5N1	Q7L5N1	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.949521	1667.82673	-0.95918	-0.00053422	0.098161	5.4671E-05	-0.86102	-0.00047955	556.949494703016	9.2125	0.079804	9.2125	9.1681	9.2479	0	750	28	0.820941264895493	0.0183719873373771	0.820941264895493	497.295146518978	0	11.1290545687806						173	10	3	NaN	NaN	NaN	0.0001271	1	23572	52.863	45.306	1	44818			1509	2120	1277	1300	1509	1509		
ASEAGEVPFNHEILR	15	Unmodified	_ASEAGEVPFNHEILR_			0	0	0	Q7L5N1	Q7L5N1	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.949521	1667.82673	0.11422	6.3615E-05	-0.70647	-0.00039347	-0.59225	-0.00032985	556.949928566865	9.2036	0.12414	9.2036	9.1504	9.2745	0	675	31	0.871889544407995	0.0203467753386566	0.871889544407995	528.157689413182	0	12.3253064780937						271	15	4	NaN	NaN	NaN	0.0022327	1	23573	44.82	42.149	1	74357			1510	2120	1277	1300	1510	1510		
ASEAGEVPFNHEILR	15	Unmodified	_ASEAGEVPFNHEILR_			0	0	0	Q7L5N1	Q7L5N1	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.920643	1667.82673	2.5128	0.002098	-0.66723	-0.00055709	1.8456	0.0015409	834.920397898962	9.2213	0.11526	9.2213	9.1504	9.2656	0	318	43	1.11199926528787	0.0280245115446394	1.11199926528787	449.073614177304	0	11.3175152877883						264	14	3	NaN	NaN	NaN	3.7967E-06	1	23575	77.157	74.678	1	52938			1511	2120	1277	1300	1511	1511		
ASEGPAFFPGR	11	Unmodified	_ASEGPAFFPGR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.28018	1134.54581	0.78163	0.00044418	0.28762	0.00016345	1.0693	0.00060763	568.280710009322	9.0174	0.22172	9.0174	8.9464	9.1681	0	642	61	0.894250814548268	0.0406371291236521	0.894250814548268	362.532515727014	0	16.4744391768468						492	26	3	NaN	NaN	NaN	0.0011978	1	7648	86.205	78.023	1	136930			1512	3036	1278	1301	1512	1512		
ASEIMVDDEELAQHPATTEDIR	22	Unmodified	_ASEIMVDDEELAQHPATTEDIR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.051592	2469.13295	1.791	0.0014758	0.39816	0.00032811	2.1891	0.001804	824.38653674746	10.268	0.1064	10.268	10.232	10.339	0	426	37	1.03977710643793	0.0241405316442127	1.03977710643793	628.172132473314	0	14.5842884480645						429	13	6	NaN	NaN	NaN	1.1455E-08	1	36675	88.203	83.369	1	149220			1513	2220	1279	1302	1513	1513		
ASEIMVDDEELAQHPATTEDIR	22	Oxidation (M)	_ASEIM(Oxidation (M))VDDEELAQHPATTEDIR_	ASEIM(1)VDDEELAQHPATTEDIR	ASEIM(52)VDDEELAQHPATTEDIR	0	1	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.383231	2485.12786	1.7314	0.001436	0.011381	9.4396E-06	1.7428	0.0014455	829.717393360746	9.3721	0.070908	9.3721	9.3455	9.4164	0	426	25	1.03977710643793	0.0160892438574902	1.03977710643793	628.149510401469	0	9.71982417119671						185	9	4	NaN	NaN	NaN	0.00038269	1	36755	52.149	51.274	1	45620			1514	2220	1279	1303	1514	1514	590	
ASELGHSLNENVLK	14	Unmodified	_ASELGHSLNENVLK_			0	0	0	Q8N6T3	Q8N6T3	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.26685	1509.77872	-1.4064	-0.0007092	0.21995	0.00011091	-1.1864	-0.00059828	504.266860655489	7.3231	0.11527	7.3231	7.2787	7.394	0	792	31	0.792332785124922	0.0204545420260502	0.792332785124922	480.378457018773	0	12.401255535514						223	14	3	NaN	NaN	NaN	0.0027279	1	18799	55.754	42.58	1	64663			1515	2266	1280	1304	1515	1515		
ASELGHSLNENVLK	14	Unmodified	_ASELGHSLNENVLK_			0	0	0	Q8N6T3	Q8N6T3	Q8N6T3	ARFGAP1	ADP-ribosylation factor GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.896637	1509.77872	2.2281	0.0016842	0.43549	0.00032919	2.6636	0.0020134	756.398447176735	7.3231	0.088676	7.3231	7.2875	7.3762	0	375	37	1.07392668217569	0.0240773390598485	1.07392668217569	434.072127132286	0	9.73185782126234						205	11	3	NaN	NaN	NaN	0.0060296	1	18801	48.822	41.967	1	54002			1516	2266	1280	1304	1516	1516		
ASEQIYGTPSSSPYECLR	18	Unmodified	_ASEQIYGTPSSSPYECLR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.96766	2043.92077	2.6798	0.0027414	-1.0797	-0.0011045	1.6001	0.0016369	1023.468131503	9.7889	0.079788	9.7889	9.7534	9.8332	0	216	64	1.17988115188462	0.0418550311112162	1.17988115188462	475.764132548999	0	16.8772274543347						365	10	4	NaN	NaN	NaN	1.017E-06	1	32417	84.58	79.763	1	68903			1517	1736	1281	1305	1517	1517		
ASEVMGPVEAAPEYR	15	Unmodified	_ASEVMGPVEAAPEYR_			0	0	0	Q8WWY3	Q8WWY3	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.382505	1604.75046	2.2619	0.0018172	2.6251	0.0021089	4.887	0.0039261	803.386294374731	8.7511	0.15983	8.7511	8.6712	8.831	0	411	187	1.04982941439551	0.124228805603021	1.04982941439551	424.103996550149	0	50.1852322105387						973	19	4	NaN	NaN	NaN	4.8638E-05	1	21731	77.157	74.856	1	222680			1518	2393	1282	1306	1518	1518		
ASEVQEFTAEFLEK	14	Unmodified	_ASEVQEFTAEFLEK_			0	0	0	Q8NEM2	Q8NEM2	Q8NEM2	SHCBP1	SHC SH2 domain-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.396135	1626.77772	0.90299	0.00073539	-0.024834	-2.0225E-05	0.87816	0.00071517	814.394674601872	16.369	0.14189	16.369	16.289	16.431	0	372	31	1.07593298845566	0.0200616822933108	1.07593298845566	434.59881103251	0	8.10346310182319						285	17	4	NaN	NaN	NaN	5.3083E-06	1	22379	115.05	108.67	1	69697			1519	2312	1283	1307	1519	1519		
ASEWVQQVSGLMDGK	15	Unmodified	_ASEWVQQVSGLMDGK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.89578	1633.77701	1.6958	0.001387	0.21518	0.000176	1.911	0.001563	817.896254764983	15.127	0.23046	15.127	15.021	15.251	0	381	58	1.06991323971056	0.0381408649762871	1.06991323971056	432.151635446574	0	15.4055829623235						1050	27	5	NaN	NaN	NaN	9.5963E-34	1	22589	233.7	163.31	1	492930			1520	1136	1284	1308	1520	1520		
ASFENNCEIGCFAK	14	Unmodified	_ASFENNCEIGCFAK_			0	0	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.850515	1645.68648	1.719	0.0014162	0.07934	6.5365E-05	1.7984	0.0014816	823.85112513306	9.4164	0.17734	9.4164	9.3632	9.5406	0	390	43	1.06389100039157	0.0281134808149035	1.06389100039157	429.693028073142	0	11.3547033451603						715	21	6	NaN	NaN	NaN	1.0157E-16	1	22900	175.54	171.64	1	378380			1521	1286	1285	1309	1521	1521		
ASFNHFDK	8	Unmodified	_ASFNHFDK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.227417	964.44028	0.76317	0.00036878	-5.6476	-0.0027291	-4.8844	-0.0023603	483.22493344269	3.2705	0.32808	3.2705	3.1198	3.4479	0	735	49	0.831145085810763	0.0326545061088502	0.831145085810763	337.661796193088	0	13.2662508324365						561	38	2	NaN	NaN	NaN	0.070199	1	3519	36.211	24.144	1	175020			1522	221	1286	1310	1522	1522		
ASFNHFDRDHSGTLGPEEFK	20	Unmodified	_ASFNHFDRDHSGTLGPEEFK_			0	0	1	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	573.517354	2290.04031	0.31234	0.00017914	0.06828	3.916E-05	0.38063	0.0002183	573.767401568	7.5092	0.15076	7.5092	7.456	7.6068	0	651	28	0.888155670855968	0.018290507163651	0.888155670855968	715.739585590806	0	14.739803445651						288	18	4	NaN	NaN	NaN	0.066922	1	35561	16.155	15.68	1	76990			1523	671	1287	1311	1523	1523		
ASFVDEHTVCGVAK	14	Unmodified	_ASFVDEHTVCGVAK_			0	0	0	Q9NNW7	Q9NNW7	Q9NNW7	TXNRD2	Thioredoxin reductase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.364115	1518.71368	2.5896	0.001969	2.265	0.0017222	4.8546	0.0036913	760.363029722436	6.7111	0.062045	6.7111	6.6845	6.7466	0	351	28	1.08996939197032	0.0180393458304879	1.08996939197032	440.532901788889	0	7.29096195142932						135	8	4	NaN	NaN	NaN	5.2131E-05	1	19084	95.138	80.683	1	36401			1524	2974	1288	1312	1524	1524		
ASFVTEVLAHSGR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASFVTEVLAHSGR_			1	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.367515	1414.72048	0.9256	0.00065567	1.0607	0.00075137	1.9863	0.001407	708.368168256122	18.133	0.12413	18.133	18.089	18.213	0	423	43	1.04178812298108	0.028152295306344	1.04178812298108	421.338913487676	0	11.3858636462633						392	15	4	NaN	NaN	NaN	7.4324E-08	1	15927	127.03	110.38	1	125880			1525	193	1289	1313	1525	1525		
ASFWLGELQR	10	Unmodified	_ASFWLGELQR_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.81693	1205.61931	0.24871	0.00015018	-1.2878	-0.00077759	-1.0391	-0.00062741	603.816300178391	14.099	0.27485	14.099	14.019	14.294	0	633	85	0.900343422309015	0.056781667722799	0.900343422309015	364.744029025724	0	23.003193833414						584	32	3	NaN	NaN	NaN	0.029448	1	9624	57.032	37.709	1	171680			1526	3437	1290	1314	1526	1526		
ASGELMTVAR	10	Unmodified	_ASGELMTVAR_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.768591	1033.52263	-0.31587	-0.00016355	-0.89814	-0.00046503	-1.214	-0.00062857	517.768498744658	5.9219	0.11535	5.9219	5.8775	5.9929	0	741	37	0.827064408645228	0.0244840671338465	0.827064408645228	335.688093458552	0	9.93756922720843						171	14	3	NaN	NaN	NaN	0.034901	1	5089	43.272	38.365	1	39287			1527	1108	1291	1315	1527	1527		
ASGGSLQGHDAVLR	14	Unmodified	_ASGGSLQGHDAVLR_			0	0	0	Q8NEJ9	Q8NEJ9	Q8NEJ9	NGDN	Neuroguidin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.354939	1366.69533	2.4576	0.0016819	-1.8766	-0.0012843	0.58101	0.00039762	684.353814189984	4.0864	0.070959	4.0864	4.0598	4.1307	0	456	22	1.01965166402748	0.0140965660785977	1.01965166402748	412.526354989744	0	5.70312904635171						97	9	3	NaN	NaN	NaN	1.4841E-05	1	14395	87.573	70.103	1	18326			1528	2311	1292	1316	1528	1528		
ASGNYATVISHNPETK	16	Unmodified	_ASGNYATVISHNPETK_			0	0	0	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.915558	1687.81656	2.9043	0.0024539	-1.3066	-0.0011039	1.5978	0.00135	844.914537062843	5.3278	0.43452	5.3278	5.2568	5.6913	0	273	142	1.14198628764525	0.0940760358290917	1.14198628764525	461.13867029379	0	37.9882828174682						1555	50	5	NaN	NaN	NaN	1.0637E-56	1	24136	330.24	287.07	1	779970			1529	1416	1293	1317	1529	1529		
ASGNYATVISHNPETK	16	Unmodified	_ASGNYATVISHNPETK_			0	0	0	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.612797	1687.81656	0.92377	0.00052065	1.778	0.0010021	2.7017	0.0015227	563.613870864241	5.3278	0.23056	5.3278	5.2479	5.4785	0	666	79	0.877991458330206	0.052916344363654	0.877991458330206	531.802143160822	0	32.0515935250064						989	27	5	NaN	NaN	NaN	4.463E-05	1	24137	104.49	93.282	1	563400			1530	1416	1293	1317	1530	1530		
ASGPGLNTTGVPASLPVEFTIDAK	24	Unmodified	_ASGPGLNTTGVPASLPVEFTIDAK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1171.61555	2341.21654	0.656	0.00076858	-3.5771	-0.004191	-2.9211	-0.0034225	1172.11400799239	16.661	0.11528	16.661	16.608	16.723	0	75	70	1.27319752866042	0.0455341401577483	1.27319752866042	512.952058711824	0	18.345017493212						648	14	4	NaN	NaN	NaN	0.00097856	1	35976	49.485	46.411	1	140740			1531	792	1294	1318	1531	1531		
ASGPPVSELITK	12	Unmodified	_ASGPPVSELITK_			0	0	0	P10412;P16402	P10412	P10412	HIST1H1E;HIST1H1D	Histone H1.4;Histone H1.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.837528	1197.6605	0.26622	0.00015969	0.3739	0.00022428	0.64012	0.00038397	599.837796504855	9.5406	0.1152	9.5406	9.4874	9.6026	0	618	16	0.910492137470517	0.0101416826193523	0.910492137470517	368.88317200514	0	4.10887244396139						99	14	2	NaN	NaN	NaN	0.0028916	1	9402	54.27	45.293	1	84089			1532	625	1295	1319	1532	1532		
ASGQAFELILSPR	13	Unmodified	_ASGQAFELILSPR_			0	0	0	P16949	P16949	P16949	STMN1	Stathmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.880259	1387.74596	1.7994	0.0012504	-0.59359	-0.00041247	1.2058	0.00083792	694.879963935564	14.391	0.30147	14.391	14.267	14.568	0	426	85	1.03977710643793	0.0563124017776579	1.03977710643793	420.60471247342	0	22.7791720088169						1491	35	5	NaN	NaN	NaN	0.0031794	1	15082	83.214	75.031	1	764000			1533	732	1296	1320	1533	1533		
ASGVQVADEVCR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASGVQVADEVCR_			1	0	0	P60981	P60981	P60981	DSTN	Destrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.814258	1331.61396	1.0339	0.00068944	1.2213	0.00081435	2.2552	0.0015038	666.815193138511	9.3721	0.15074	9.3721	9.31	9.4608	0	471	34	1.00957851518677	0.0221701170870099	1.00957851518677	408.558723481185	0	8.9718576616317						378	18	4	NaN	NaN	NaN	3.4827E-05	1	13337	101.48	84.829	1	129050			1534	1317	1298	1321	1534	1534		
ASHLLETLLCK	11	Unmodified	_ASHLLETLLCK_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	428.904196	1283.69076	-2.4336	-0.0010438	-0.51116	-0.00021924	-2.9448	-0.001263	428.903901240235	11.784	0.06206	11.784	11.749	11.811	0	855	16	0.749315378969369	0.0102579465428215	0.749315378969369	455.022770807366	0	6.22915182273243						53	8	2	NaN	NaN	NaN	0.070778	1	11877	8.9771	8.6161	1	9974.5			1535	1540	1299	1322	1535	1535		
ASIHEAWTDGK	11	Unmodified	_ASIHEAWTDGK_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	405.531527	1213.57275	-0.46602	-0.00018898	0.89454	0.00036276	0.42852	0.00017378	405.531976761397	4.5386	0.15963	4.5386	4.4943	4.6539	0	864	31	0.743159753061487	0.0205230469262404	0.743159753061487	451.561765659259	0	12.4702976292019						377	19	4	NaN	NaN	NaN	0.0028607	1	9823	67.881	38.126	1	164920			1536	221;671	1300	1323	1536	1536		
ASIHEAWTDGK	11	Unmodified	_ASIHEAWTDGK_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.793652	1213.57275	2.1681	0.0013178	0.0061818	3.7573E-06	2.1743	0.0013215	607.79362441474	4.5386	0.26601	4.5386	4.4499	4.7159	0	594	46	0.926715457081489	0.030408192841195	0.926715457081489	375.399926133498	0	12.3179485776442						506	31	3	NaN	NaN	NaN	1.4034E-07	1	9824	151.22	83.341	1	332280			1537	221;671	1300	1323	1537	1537		
ASILWLIGENCER	13	Unmodified	_ASILWLIGENCER_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.895583	1559.77661	0.36342	0.00028379	1.9952	0.0015581	2.3586	0.0018418	780.89714329174	16.918	0.21286	16.918	16.821	17.034	0	390	40	1.06389100039157	0.0261071745349262	1.06389100039157	429.890542307941	0	10.5492267674196						350	25	2	NaN	NaN	NaN	0.00098301	1	20341	53.028	23.711	1	118250			1538	61	1301	1324	1538	1538		
ASIPFSVVGSNQLIEAK	17	Unmodified	_ASIPFSVVGSNQLIEAK_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.483076	1758.9516	1.9904	0.0017525	4.1325	0.0036386	6.1228	0.005391	880.486519355901	14.923	0.17733	14.923	14.852	15.03	0	258	115	1.15196821829984	0.0758158757401914	1.15196821829984	465.016155902777	0	30.604669931901						1096	21	4	NaN	NaN	NaN	0.0001881	1	26114	62.398	46.782	1	267670			1539	1792	1302	1325	1539	1539		
ASITPGTILIILTGR	15	Unmodified	_ASITPGTILIILTGR_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.469241	1524.92393	0.70679	0.00053961	-0.34059	-0.00026003	0.3662	0.00027958	763.468398342328	20.057	0.026607	20.057	20.04	20.066	0	399	25	1.0578662689527	0.0160714927508061	1.0578662689527	427.542066384883	0	6.49537604348797						60	4	3	NaN	NaN	NaN	0.038241	1	19281	48.822	46.839	1	17592			1540	1533	1303	1326	1540	1540		
ASLEAAIADAEQR	13	Unmodified	_ASLEAAIADAEQR_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.84133	1343.66811	2.0656	0.0013898	1.0266	0.00069075	3.0923	0.0020806	672.842529170315	11.03	0.39017	11.03	10.844	11.234	0	486	115	0.999498404980629	0.0765719269719066	0.999498404980629	404.442208431365	0	30.9844608996282						1985	45	4	NaN	NaN	NaN	5.8282E-08	1	13710	159.93	120.92	1	1152400		+	1541	28	1304	1327	1541	1541		
ASLEAAIADAEQRGELAIK	19	Unmodified	_ASLEAAIADAEQRGELAIK_			0	0	1	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.523461	1955.03237	0.076513	7.487E-05	-0.17079	-0.00016712	-0.094277	-9.2252E-05	979.025270464466	15.056	0.053187	15.056	15.03	15.083	0	63	34	1.28111162701928	0.0217622834966473	1.28111162701928	516.741786734446	0	8.77790898178296						144	7	3	NaN	NaN	NaN	0.00047527	1	30798	98.865	97.155	1	30719		+	1542	28	1305	1328	1542	1542		
ASLEAAIADAEQRGELAIK	19	Unmodified	_ASLEAAIADAEQRGELAIK_			0	0	1	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.684733	1955.03237	0.51363	0.00033524	-0.27067	-0.00017666	0.24296	0.00015858	653.019160336903	15.056	0.088673	15.056	15.012	15.101	0	564	49	0.946969335010767	0.0323927488942614	0.946969335010767	572.944043237615	0	19.5985570354796						350	11	4	NaN	NaN	NaN	6.2875E-05	1	30799	63.79	56.584	1	83742		+	1543	28	1305	1328	1543	1543		
ASLEELQSVHSER	13	Unmodified	_ASLEELQSVHSER_			0	0	0	Q8WUI4	Q8WUI4	Q8WUI4	HDAC7	Histone deacetylase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.870619	1483.72669	2.4699	0.0018348	-1.5197	-0.0011289	0.95017	0.00070585	742.869737811333	6.0815	0.044336	6.0815	6.0638	6.1081	0	354	16	1.08796502040166	0.0100218581287259	1.08796502040166	439.81644837038	0	4.05139684235513						62	6	3	NaN	NaN	NaN	0.00019355	1	18024	73.655	55.319	1	10383			1544	2367	1306	1329	1544	1544		
ASLEEPPDGPSAGQATGPGEGR	22	Unmodified	_ASLEEPPDGPSAGQATGPGEGR_			0	0	0	Q9BVG9	Q9BVG9	Q9BVG9	PTDSS2	Phosphatidylserine synthase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.48252	2078.95049	2.1637	0.0022513	-0.93416	-0.00097197	1.2295	0.0012793	1040.48150638475	6.4274	0.053182	6.4274	6.4008	6.454	0	231	46	1.16991841121525	0.0298923356935374	1.16991841121525	471.693216183278	0	12.0521327191256						120	7	2	NaN	NaN	NaN	8.6399E-06	1	33004	66.913	65.642	1	24787			1545	2763	1307	1330	1545	1545		
ASLEGNLAETENR	13	Unmodified	_ASLEGNLAETENR_			0	0	0	Q04695;CON__Q04695	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.341694	1402.66884	2.0742	0.0014568	0.65193	0.00045788	2.7261	0.0019146	702.34265526465	6.2855	0.51434	6.2855	6.1259	6.6402	0	519	103	0.97729762293174	0.0687109098914769	0.97729762293174	395.289368756443	0	27.7916282208944						1848	59	6	NaN	NaN	NaN	1.8878E-33	1	15538	228.28	185.01	1	2191700		+	1546	36	1308	1331	1546	1546		
ASLGSLEGEAEAEASSPK	18	Unmodified	_ASLGSLEGEAEAEASSPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.915421	1731.81629	1.9578	0.0016973	-0.49962	-0.00043313	1.4582	0.0012641	867.416335934416	10.676	0.079815	10.676	10.658	10.738	0	192	22	1.1958073123591	0.0139286947503481	1.1958073123591	482.771889482188	0	5.62329918302657						112	10	3	NaN	NaN	NaN	0.040277	1	25372	38.14	36.156	1	20355			1547	1584	1309	1332	1547	1547		
ASLGSLEGEAEAEASSPK	18	Unmodified	_ASLGSLEGEAEAEASSPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.915421	1731.81629	2.6008	0.0022547	1.186	0.0010282	3.7868	0.0032829	866.916663332442	10.684	0.17734	10.684	10.622	10.8	0	279	37	1.13799159301878	0.0239780653182871	1.13799159301878	459.430493973485	0	9.68043565637072						512	21	4	NaN	NaN	NaN	9.4033E-07	1	25373	100.69	95.305	1	194240			1548	1584	1309	1332	1548	1548		
ASLINNAFQLVSIGK	15	Unmodified	_ASLINNAFQLVSIGK_			0	0	0	Q9NZ08	Q9NZ08	Q9NZ08	ERAP1	Endoplasmic reticulum aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.948672	1573.88279	0.94433	0.00074409	0.4046	0.0003188	1.3489	0.0010629	787.949228907893	17.858	0.079801	17.858	17.814	17.894	0	381	25	1.06991323971056	0.016055984619652	1.06991323971056	432.289882130414	0	6.48729209164168						130	10	3	NaN	NaN	NaN	0.00024906	1	20799	68.108	51.116	1	33314			1549	3125	1310	1333	1549	1549		
ASLLQNESTNEQLQIHYK	18	Unmodified	_ASLLQNESTNEQLQIHYK_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.027159	2115.05965	1.4396	0.0010164	0.046382	3.2747E-05	1.486	0.0010492	706.361517192768	9.7179	0.09757	9.7179	9.6913	9.7889	0	549	28	0.957085760909907	0.0182045269808345	0.957085760909907	578.756145911008	0	11.0083989375665						227	12	4	NaN	NaN	NaN	2.5704E-10	1	33545	77.696	67.785	1	51088			1550	2731	1311	1334	1550	1550		
ASLLSFQDEEEENEEVFK	18	Unmodified	_ASLLSFQDEEEENEEVFK_			0	0	0	Q9Y5B6	Q9Y5B6	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.98931	2141.96407	1.135	0.0012167	-0.027622	-2.9611E-05	1.1074	0.0011871	1072.49122543468	14.728	0.13299	14.728	14.622	14.755	0	150	37	1.22363604450103	0.0238368401892524	1.22363604450103	493.25503059511	0	9.60877328653311						214	16	3	NaN	NaN	NaN	0.0201	1	33904	34.472	30.833	1	34904			1551	3428	1312	1335	1551	1551		
ASLMNDDFEK	10	Unmodified	_ASLMNDDFEK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.260796	1168.50704	1.438	0.00084161	0.36521	0.00021374	1.8032	0.0010554	585.261042166236	7.8197	0.11531	7.8197	7.7753	7.8906	0	588	37	0.93076847747433	0.024311389219916	0.93076847747433	377.205210483939	0	9.85248524180736						242	14	3	NaN	NaN	NaN	0.017881	1	8558	28.647	22.383	1	55396			1552	3294	1313	1336	1552	1552		
ASLNPSDTPPSVVNEDFLHDLK	22	Unmodified	_ASLNPSDTPPSVVNEDFLHDLK_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	799.06405	2394.17032	1.707	0.001364	-1.3571	-0.0010844	0.34985	0.00027955	799.397382266314	14.515	0.15073	14.515	14.462	14.613	0	429	85	1.03776581230406	0.0563902078588648	1.03776581230406	627.066860036633	0	34.0736129092206						796	18	5	NaN	NaN	NaN	2.3197E-06	1	36316	61.867	54.878	1	192380			1553	49	1314	1337	1553	1553		
ASLPTLGFTHFQPAQLTTVGK	21	Unmodified	_ASLPTLGFTHFQPAQLTTVGK_			0	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.735428	2213.18445	-0.00061661	-4.5551E-07	0.36215	0.00026753	0.36153	0.00026708	739.070015141412	15.34	0.11525	15.34	15.287	15.402	0	606	31	0.918606045818476	0.0202763400038137	0.918606045818476	555.326660980778	0	12.2576944082664						252	14	4	NaN	NaN	NaN	0.023583	1	34832	31.138	28.544	1	54159			1554	913	1315	1338	1554	1554		
ASLQETHFDSTQTK	14	Unmodified	_ASLQETHFDSTQTK_			0	0	0	O94888	O94888	O94888	UBXN7	UBX domain-containing protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.881184	1591.74781	2.6832	0.0021382	-2.4474	-0.0019503	0.23579	0.0001879	796.879361949987	4.379	0.053209	4.379	4.3613	4.4145	0	399	25	1.0578662689527	0.0160692759282262	1.0578662689527	427.380568382661	0	6.4920269047829						109	7	3	NaN	NaN	NaN	1.5902E-05	1	21317	89.359	76.185	1	21936			1555	392	1316	1339	1555	1555		
ASLSLAPVNIFK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASLSLAPVNIFK_			1	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.37682	1300.73909	1.2899	0.00084018	1.2203	0.0007949	2.5102	0.0016351	651.377895875639	19.561	0.15075	19.561	19.508	19.658	0	441	106	1.02971785871157	0.0705121428086859	1.02971785871157	416.810339609378	0	28.5419835560079						774	18	5	NaN	NaN	NaN	9.0892E-06	1	12379	134.66	92.863	1	990200			1556	1461	1317	1340	1556	1556		
ASLYPCPETPQER	13	Unmodified	_ASLYPCPETPQER_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.361573	1546.70859	2.2765	0.0017628	-2.4873	-0.001926	-0.21081	-0.00016324	774.359107683793	7.1811	0.15072	7.1811	7.1191	7.2698	0	429	34	1.03776581230406	0.0221272927649854	1.03776581230406	419.365225903268	0	8.94172559839251						274	18	3	NaN	NaN	NaN	0.006265	1	19936	22.956	20.819	1	131630			1557	2454	1318	1341	1557	1557		
ASMDVENPDYSEEILK	16	Unmodified	_ASMDVENPDYSEEILK_			0	0	0	Q9NYH9	Q9NYH9	Q9NYH9	UTP6	U3 small nucleolar RNA-associated protein 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.419481	1838.82441	1.9128	0.0017606	-0.16033	-0.00014757	1.7525	0.001613	920.420418296024	11.651	0.15076	11.651	11.598	11.749	0	276	55	1.13998907770044	0.0359671056362876	1.13998907770044	460.024183353637	0	14.5139446698059						533	18	4	NaN	NaN	NaN	1.2944E-06	1	28188	119.79	111.79	1	131990			1558	3114	1319	1342	1558	1558		
ASMGTLAFDEYGRPFLIIK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASMGTLAFDEYGRPFLIIK_			1	0	1	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.06391	2170.11326	0.24239	0.00026326	0.066053	7.1737E-05	0.30845	0.00033499	1086.56542179258	19.729	0.062054	19.729	19.703	19.765	0	66	64	1.27913350869533	0.0415803393811986	1.27913350869533	515.583297592557	0	16.7598834269007						321	8	5	NaN	NaN	NaN	4.0628E-15	1	34315	112.95	108.64	1	75920			1559	1113	1321	1343	1559	1559		
ASMQPIQIAEGTGITTR	17	Unmodified	_ASMQPIQIAEGTGITTR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.461818	1772.90908	1.8797	0.0016681	-0.81762	-0.00072561	1.062	0.00094252	887.461682527291	12.041	0.29264	12.041	11.873	12.165	0	288	58	1.13199748998575	0.0379783412948009	1.13199748998575	456.926435008148	0	15.3298114606018						757	34	4	NaN	NaN	NaN	0.003773	1	26486	53.773	50.268	1	227980			1560	1782	1322	1344	1560	1560		
ASNGDAWVEAHGK	13	Unmodified	_ASNGDAWVEAHGK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.31274	1340.61093	2.7435	0.0018417	-1.439	-0.000966	1.3045	0.00087575	671.311756000151	3.6785	0.21278	3.6785	3.6431	3.8558	0	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	409.346025754668	0	9.78613083487238						361	25	3	NaN	NaN	NaN	0.0003031	1	13601	88.734	69.478	1	100370			1561	1007	1323	1345	1561	1561		
ASNGDAWVEAHGK	13	Unmodified	_ASNGDAWVEAHGK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.877586	1340.61093	-0.28504	-0.00012766	3.1455	0.0014088	2.8604	0.0012811	447.878796565279	3.6785	0.15077	3.6785	3.6431	3.7938	0	795	34	0.790287188799094	0.0225015628542545	0.790287188799094	479.68629986371	0	13.6579354691425						317	18	4	NaN	NaN	NaN	0.071475	1	13603	21.15	16	1	92465			1562	1007	1323	1345	1562	1562		
ASNLENSTYDLYTIPK	16	Unmodified	_ASNLENSTYDLYTIPK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.951806	1827.88906	2.1213	0.0019409	-0.2363	-0.0002162	1.885	0.0017247	915.452830198099	12.29	0.16847	12.29	12.236	12.405	0	297	94	1.12600091227925	0.0618965501171376	1.12600091227925	454.399835811912	0	24.9784719566692						1320	20	4	NaN	NaN	NaN	4.1078E-07	1	27919	117.03	113.53	1	484350			1563	1241	1324	1346	1563	1563		
ASNLQDLVYK	10	Unmodified	_ASNLQDLVYK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.808771	1149.60299	0.4743	0.00027311	-0.88178	-0.00050774	-0.40747	-0.00023463	575.808404838547	9.1947	0.079829	9.1947	9.1592	9.2391	0	630	37	0.902373728295776	0.0243586086467772	0.902373728295776	365.768047053416	0	9.87351519031569						228	10	3	NaN	NaN	NaN	0.0031317	1	8060	81.163	65.582	1	86796			1564	423	1325	1347	1564	1564		
ASPDLVPMGEWTAR	14	Unmodified	_ASPDLVPMGEWTAR_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.374483	1528.73441	1.7838	0.0013653	0.94675	0.00072462	2.7305	0.0020899	765.375600814967	13.46	0.29267	13.46	13.3	13.593	0	408	46	1.0518390438467	0.0301486093573291	1.0518390438467	425.096595300086	0	12.1844413989074						470	28	4	NaN	NaN	NaN	0.015047	1	19380	43.306	37.278	1	137610			1565	452	1326	1348	1565	1565		
ASPDQNASTHTPQSSVK	17	Unmodified	_ASPDQNASTHTPQSSVK_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.614978	1753.8231	-0.8094	-0.000474	2.9437	0.0017239	2.1343	0.0012499	585.616435402389	2.4902	0.062069	2.4902	2.4459	2.5079	0	792	13	0.792332785124922	0.00818181597813572	0.792332785124922	479.771460439494	0	4.95423371917951						44	8	2	NaN	NaN	NaN	0.0010595	1	26002	31.722	29.051	1	8543.9			1566	1763	1327	1349	1566	1566		
ASPFLLQYIQEEIPDYR	17	Unmodified	_ASPFLLQYIQEEIPDYR_			0	0	0	O60256	O60256	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.53075	2081.04696	0.99477	0.0010361	-0.81045	-0.00084411	0.18432	0.00019197	1042.03202441138	19.729	0.088666	19.729	19.685	19.774	0	165	31	1.21370334790578	0.0198694832228234	1.21370334790578	489.343361909343	0	8.011018290783						186	11	4	NaN	NaN	NaN	1.7159E-08	1	33049	88.796	82.893	1	35849			1567	250	1328	1350	1567	1567		
ASPFLLQYIQEEIPNYR	17	Unmodified	_ASPFLLQYIQEEIPNYR_			0	0	0	Q14558	Q14558	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.03875	2080.06294	0.72091	0.00075049	-0.16933	-0.00017627	0.55158	0.00057422	1041.54009480241	19.552	0.088674	19.552	19.516	19.605	0	156	37	1.21966378336455	0.0238401103088965	1.21966378336455	491.748042175657	0	9.61193382106643						194	11	3	NaN	NaN	NaN	8.3518E-05	1	33033	72.327	66.122	1	37010			1568	1755	1329	1351	1568	1568		
ASPLFSQHTAADK	13	Unmodified	_ASPLFSQHTAADK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.846416	1371.67828	2.4457	0.0016798	-0.18558	-0.00012747	2.2601	0.0015523	686.846506433179	4.5297	0.25714	4.5297	4.3968	4.6539	0	495	61	0.993446994398923	0.0403790284302168	0.993446994398923	401.909952900668	0	16.335781884752						446	30	3	NaN	NaN	NaN	0.00011781	1	14532	80.623	77.278	1	107940			1569	1923	1330	1352	1569	1569		
ASQDPFLQHVNK	12	Unmodified	_ASQDPFLQHVNK_			0	0	0	Q68CQ4	Q68CQ4	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.905364	1382.69426	-1.1778	-0.00054403	-0.045756	-2.1135E-05	-1.2236	-0.00056517	461.905402529467	5.7889	0.097511	5.7889	5.7445	5.8421	0	837	28	0.761618911097395	0.0184488704959693	0.761618911097395	462.141938067721	0	11.1945707255126						127	12	2	NaN	NaN	NaN	0.023592	1	14906	25.857	23.697	1	27462			1570	2021	1331	1353	1570	1570		
ASQSQGIQQLLQAEK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ASQSQGIQQLLQAEK_			1	0	0	O75348;O95670	O75348	O75348	ATP6V1G1;ATP6V1G2	V-type proton ATPase subunit G 1;V-type proton ATPase subunit G 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.939033	1669.86351	2.0863	0.001744	1.9568	0.0016357	4.0431	0.0033798	835.942769136497	14.675	0.30148	14.675	14.427	14.728	0	252	70	1.15595906938629	0.0459232234094245	1.15595906938629	466.821791088271	0	18.5456059581036						710	35	4	NaN	NaN	NaN	1.4016E-06	1	23624	102.57	89.392	1	201180			1571	321	1332	1354	1571	1571		
ASSEGGTAAGAGLDSLHK	18	Unmodified	_ASSEGGTAAGAGLDSLHK_			0	0	0	O15143	O15143	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.897365	1627.78018	3.6105	0.0029421	-2.2776	-0.001856	1.3329	0.0010862	814.895507322461	5.0529	0.18618	5.0529	5.0174	5.2036	0	255	46	1.15396378101328	0.0299375645807289	1.15396378101328	466.115171013903	0	12.092539873334						555	22	4	NaN	NaN	NaN	5.8612E-45	1	22400	247.66	230.66	1	212940			1572	147	1333	1355	1572	1572		
ASSEGGTAAGAGLDSLHK	18	Unmodified	_ASSEGGTAAGAGLDSLHK_			0	0	0	O15143	O15143	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.600669	1627.78018	1.8931	0.0010291	-0.14148	-7.6908E-05	1.7517	0.00095221	543.601176784503	5.0529	0.20393	5.0529	4.9553	5.1593	0	630	40	0.902373728295776	0.0263939831579142	0.902373728295776	546.734510695926	0	15.9917127623075						407	24	4	NaN	NaN	NaN	0.038213	1	22401	11.918	10.662	1	159090			1573	147	1333	1355	1573	1573		
ASSGLLYPLER	11	Unmodified	_ASSGLLYPLER_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.32987	1204.64519	0.38309	0.00023113	1.4428	0.00087047	1.8259	0.0011016	603.330631384771	11.669	0.15955	11.669	11.58	11.74	0	552	58	0.955063035883597	0.0384371124263597	0.955063035883597	386.9153792135	0	15.5716527302911						604	19	4	NaN	NaN	NaN	0.00037878	1	9604	83.358	69.363	1	216640			1574	1579	1334	1356	1574	1574		
ASSIIDELFQDR	12	Unmodified	_ASSIIDELFQDR_			0	0	0	P10909	P10909	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.351531	1392.68851	0.052907	3.6895E-05	0.1074	7.4894E-05	0.1603	0.00011179	697.351872589365	17.335	0.11525	17.335	17.282	17.397	0	528	43	0.971237000454584	0.028284867590345	0.971237000454584	392.865501369118	0	11.4412328626679						422	14	4	NaN	NaN	NaN	4.5505E-11	1	15233	120.65	95.832	1	139890			1575	636	1335	1357	1575	1575		
ASSLNENVDHSALLK	15	Unmodified	_ASSLNENVDHSALLK_			0	0	0	Q96SB3	Q96SB3	Q96SB3	PPP1R9B	Neurabin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.412651	1596.81075	2.3736	0.0018975	-1.0254	-0.00081974	1.3482	0.0010778	799.412460454883	6.8087	0.044345	6.8087	6.7909	6.8353	0	333	19	1.10198982404297	0.0120154658329306	1.10198982404297	445.194411168684	0	4.85414485660476						62	6	2	NaN	NaN	NaN	0.070925	1	21478	23.931	20.426	1	13128			1576	2620	1336	1358	1576	1576		
ASSSLGLQDFDLLR	14	Unmodified	_ASSSLGLQDFDLLR_			0	0	0	P41743	P41743	P41743	PRKCI	Protein kinase C iota type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.399012	1520.78347	0.54776	0.00041706	1.9349	0.0014732	2.4826	0.0018903	761.402354406393	16.785	0.337	16.785	16.617	16.954	0	426	52	1.03977710643793	0.0341778577956089	1.03977710643793	420.241522338058	0	13.8134941626913						566	39	3	NaN	NaN	NaN	9.0008E-05	1	19164	83.214	65.116	1	181790			1577	1038	1337	1359	1577	1577		
ASSTPSSETQEEFVDDFR	18	Unmodified	_ASSTPSSETQEEFVDDFR_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.44253	2030.87051	2.1014	0.002136	-0.7666	-0.0007792	1.3348	0.0013568	1016.94322803239	11.341	0.088714	11.341	11.314	11.403	0	243	25	1.16194328902838	0.0159546302019784	1.16194328902838	468.551350122865	0	6.43367330612062						220	11	4	NaN	NaN	NaN	2.8967E-10	1	32165	139.61	135.76	1	47440			1578	914	1338	1360	1578	1578		
ASSTSPVEISEWLDQK	16	Unmodified	_ASSTSPVEISEWLDQK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.959863	1775.85776	-1.1545	-0.00068455	1.2649	0.00075001	0.1104	6.5462E-05	593.295143727593	14.87	0.097515	14.87	14.808	14.905	0	657	28	0.884090832094921	0.0182930452073933	0.884090832094921	535.280541647686	0	11.0756845241754						168	12	4	NaN	NaN	NaN	0.035003	1	26567	46.068	42.563	1	29141			1579	685	1339	1361	1579	1579		
ASSTSPVEISEWLDQK	16	Unmodified	_ASSTSPVEISEWLDQK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.936156	1775.85776	1.5574	0.0013844	1.9404	0.0017249	3.4978	0.0031093	889.439790127235	14.861	0.23056	14.861	14.746	14.976	0	285	73	1.13399579921816	0.0479759546023661	1.13399579921816	457.727137159402	0	19.3650597010774						896	27	4	NaN	NaN	NaN	1.0636E-12	1	26569	199.51	189.26	1	573980			1580	685	1339	1361	1580	1580		
ASTLLRDEELEEIK	14	Unmodified	_ASTLLRDEELEEIK_			0	0	1	Q99653	Q99653	Q99653	CHP1	Calcineurin B homologous protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.292953	1644.85703	-1.2381	-0.00068009	0.22076	0.00012126	-1.0174	-0.00055883	549.293126453281	9.4874	0.097545	9.4874	9.4519	9.5494	0	729	25	0.835224628594324	0.0163159042618426	0.835224628594324	506.005608890829	0	9.8846930370251						157	12	4	NaN	NaN	NaN	0.00026847	1	22890	68.548	59.742	1	36302			1581	2663	1340	1362	1581	1581		
ASTNAMLISAGLPPLK	16	Unmodified	_ASTNAMLISAGLPPLK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.444908	1582.87526	1.2662	0.0010034	1.0042	0.00079581	2.2704	0.0017992	792.445840211162	14.71	0.39027	14.71	14.631	15.021	0	216	55	1.17988115188462	0.0358683429143114	1.17988115188462	476.697912811479	0	14.4915987308954						1049	45	4	NaN	NaN	NaN	1.4905E-08	1	21069	142.51	139.63	1	342970			1582	181	1341	1363	1582	1582		
ASTNIQDTEGNTPLHLACDEER	22	Unmodified	_ASTNIQDTEGNTPLHLACDEER_			0	0	0	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.374958	2470.10304	1.1614	0.0009574	1.0853	0.00089466	2.2466	0.0018521	824.709749775012	8.7599	0.097633	8.7599	8.7068	8.8044	0	555	31	0.953040030838688	0.0202342542182106	0.953040030838688	575.769428744169	0	12.2243186175832						294	12	4	NaN	NaN	NaN	6.6441E-09	1	36679	71.935	68.085	1	54073			1583	365	1342	1364	1583	1583		
ASTNIQDTEGNTPLHLACDEERVEEAK	27	Unmodified	_ASTNIQDTEGNTPLHLACDEERVEEAK_			0	0	1	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	757.604457	3026.38872	0.98404	0.00074551	0.70319	0.00053274	1.6872	0.0012783	757.855514684612	9.3721	0.1685	9.3721	9.2923	9.4608	0	489	43	0.997481546940468	0.0282301658273657	0.997481546940468	802.663181363838	0	22.7165252158539						648	20	6	NaN	NaN	NaN	6.1251E-06	1	38267	33.093	32.715	1	210740			1584	365	1343	1365	1584	1584		
ASTPDWVSEGPQPGLR	16	Unmodified	_ASTPDWVSEGPQPGLR_			0	0	0	Q8IVT2	Q8IVT2	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.918101	1695.82165	2.3949	0.0020331	-0.1928	-0.00016367	2.2021	0.0018694	848.916932453111	10.525	0.16851	10.525	10.463	10.631	0	354	67	1.08796502040166	0.044081013383825	1.08796502040166	439.307771166835	0	17.7994065776805						345	20	2	NaN	NaN	NaN	0.00025031	1	24369	76.255	72.967	1	121650			1585	2199	1344	1366	1585	1585		
ASVDELFAEIVR	12	Unmodified	_ASVDELFAEIVR_			0	0	0	P61225	P61225	P61225	RAP2B	Ras-related protein Rap-2b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.858992	1347.70343	0.40247	0.00027161	-1.7491	-0.0011804	-1.3466	-0.00090875	674.857935113711	18.47	0.10646	18.47	18.426	18.532	0	540	40	0.963152256458504	0.0262772407481359	0.963152256458504	389.723044667257	0	10.6326348727807						236	13	3	NaN	NaN	NaN	0.00028168	1	13836	62.271	50.314	1	60923			1586	1337	1345	1367	1586	1586		
ASVHCLETGEYTHIR	15	Unmodified	_ASVHCLETGEYTHIR_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.617666	1771.83117	1.0856	0.00064226	0.62277	0.00036844	1.7084	0.0010107	591.618018855619	6.0372	0.062068	6.0372	6.0106	6.0727	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	532.828139252018	0	9.84864204640985						168	8	4	NaN	NaN	NaN	2.8632E-06	1	26456	114.93	106.97	1	46342			1587	2328	1346	1368	1587	1587		
ASVITQVFHVPLEER	15	Unmodified	_ASVITQVFHVPLEER_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.649183	1723.92572	-1.7301	-0.0009959	-0.011194	-6.4441E-06	-1.7412	-0.0010023	575.649059360418	14.435	0.27486	14.435	14.311	14.586	0	789	67	0.794378096728713	0.0449624535592132	0.794378096728713	481.075288552764	0	27.2292569610283						864	32	5	NaN	NaN	NaN	6.5431E-07	1	25175	121.69	83.592	1	478970			1588	1498	1347	1369	1588	1588		
ASVITQVFHVPLEER	15	Unmodified	_ASVITQVFHVPLEER_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.970136	1723.92572	2.187	0.0018873	0.32017	0.00027629	2.5072	0.0021636	862.970468115376	14.435	0.14188	14.435	14.391	14.533	0	216	55	1.17988115188462	0.0358732713837995	1.17988115188462	476.359481977557	0	14.483300242513						582	17	4	NaN	NaN	NaN	3.8017E-10	1	25176	108.5	88.939	1	144460			1589	1498	1347	1369	1589	1589		
ASVPDGFLSELTQQLAQATGK	21	Unmodified	_ASVPDGFLSELTQQLAQATGK_			0	0	0	P14174	P14174	P14174	MIF	Macrophage migration inhibitory factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.06041	2160.10626	-0.0435	-4.7026E-05	3.2355	0.0034978	3.192	0.0034508	1081.5656242947	20.031	0.070945	20.031	19.986	20.057	0	63	70	1.28111162701928	0.0455403764010889	1.28111162701928	516.395826872963	0	18.3566051792553						234	9	4	NaN	NaN	NaN	0.0015971	1	34179	42.218	23.857	1	50341			1590	692	1348	1370	1590	1590		
ASVTVGGEQISAIGR	15	Unmodified	_ASVTVGGEQISAIGR_			0	0	0	Q8TEA8	Q8TEA8	Q8TEA8	DTD1	D-tyrosyl-tRNA(Tyr) deacylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.891355	1443.76816	1.3484	0.00097473	2.0802	0.0015038	3.4286	0.0024785	722.892637903207	9.5051	0.23053	9.5051	9.3898	9.6204	0	471	52	1.00957851518677	0.0342534486123975	1.00957851518677	408.232573628201	0	13.850704301184						603	27	4	NaN	NaN	NaN	0.056872	1	16793	41.317	31.803	1	205670			1591	2351	1349	1371	1591	1591		
ASVVTLPVYLNFTR	14	Unmodified	_ASVVTLPVYLNFTR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.445766	1578.87698	1.0013	0.00079151	-0.019776	-1.5632E-05	0.98157	0.00077588	790.445610069158	17.433	0.097516	17.433	17.388	17.486	0	378	55	1.07192009927972	0.0361409246465043	1.07192009927972	433.088790788287	0	14.6020485702645						424	12	4	NaN	NaN	NaN	0.00018073	1	20947	60	40.443	1	126560			1592	1737	1350	1372	1592	1592		
ASYDVSDSGQLEHVQPWSV	19	Unmodified	_ASYDVSDSGQLEHVQPWSV_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.48453	2102.95451	2.9699	0.0031258	-0.40845	-0.00042989	2.5614	0.0026959	1052.98543273002	13.797	0.15073	13.797	13.744	13.895	0	192	88	1.1958073123591	0.0576492298874918	1.1958073123591	482.09470756116	0	23.241527574294						1244	18	4	NaN	NaN	NaN	1.1402E-19	1	33350	189.47	183.57	1	431740			1593	1521	1351	1373	1593	1593		
ASYFICHDQETIK	13	Unmodified	_ASYFICHDQETIK_			0	0	0	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.377223	1610.73989	3.0393	0.0024508	-1.5124	-0.0012196	1.5269	0.0012312	806.375899772219	6.8264	0.079785	6.8264	6.7998	6.8796	0	330	31	1.10399226369747	0.0200230200251346	1.10399226369747	445.970214724026	0	8.08852637257223						247	10	4	NaN	NaN	NaN	3.5811E-05	1	21907	73.891	65.926	1	74289			1594	2532	1352	1374	1594	1594		
ASYFICHDQETIK	13	Unmodified	_ASYFICHDQETIK_			0	0	0	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.920574	1610.73989	0.25318	0.00013619	1.4393	0.00077424	1.6925	0.00091043	537.921471062915	6.8264	0.079785	6.8264	6.7998	6.8796	0	711	43	0.847456455381371	0.0285250764845424	0.847456455381371	513.506742467652	0	17.2844504413222						230	10	3	NaN	NaN	NaN	0.0037171	1	21908	39.293	38.89	1	50620			1595	2532	1352	1374	1595	1595		
ASYGHSMVVDPWGTVVAR	18	Unmodified	_ASYGHSMVVDPWGTVVAR_			0	0	0	Q86X76	Q86X76	Q86X76	NIT1	Nitrilase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.652599	1930.93597	-0.17231	-0.00011108	0.014784	9.5306E-06	-0.15752	-0.00010155	644.986606592939	12.334	0.079818	12.334	12.298	12.378	0	672	31	0.873923798053065	0.0203383037367069	0.873923798053065	528.795823548774	0	12.3063476449511						264	10	4	NaN	NaN	NaN	2.5655E-06	1	30327	95.656	92.941	1	60418			1596	2184	1353	1375	1596	1596		
ASYGVEDPEYAVTQLAQTTMR	21	Unmodified	_ASYGVEDPEYAVTQLAQTTMR_			0	0	0	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.55209	2329.08963	-0.18772	-0.0002188	0.63816	0.00074381	0.45044	0.00052502	1166.05430125931	17.016	0.15077	17.016	16.918	17.069	0	66	52	1.27913350869533	0.0336418368402702	1.27913350869533	515.35939833011	0	13.5542042131358						620	18	5	NaN	NaN	NaN	1.9204E-05	1	35889	46.206	41.124	1	124430			1597	3256	1354	1376	1597	1597		
ASYVAWGHSTVVNPWGEVLAK	21	Unmodified	_ASYVAWGHSTVVNPWGEVLAK_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.723411	2270.1484	0.61723	0.00046769	0.24525	0.00018583	0.86247	0.00065351	758.058058836775	15.056	0.070847	15.056	15.021	15.092	0	492	52	0.995464410099171	0.0343055628620362	0.995464410099171	601.695866947219	0	20.7355633993272						323	9	4	NaN	NaN	NaN	1.8522E-08	1	35366	96.27	90.066	1	59303			1598	3001	1355	1377	1598	1598		
ATAAETSASEPEAESK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATAAETSASEPEAESK_			1	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.865396	1619.71624	2.5659	0.0020806	-0.4417	-0.00035816	2.1242	0.0017224	810.865333359897	5.3189	0.062056	5.3189	5.2923	5.3544	0	291	25	1.12999890578964	0.0159919751771491	1.12999890578964	456.454319633598	0	6.45983470575305						86	8	2	NaN	NaN	NaN	2.2807E-05	1	22170	71.219	61.198	1	21276			1599	1793	1356	1378	1599	1599		
ATAAFILANEHNVALFK	17	Unmodified	_ATAAFILANEHNVALFK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.668466	1828.98357	-0.11783	-7.1958E-05	0.29155	0.00017804	0.17371	0.00010608	610.668409764455	14.001	0.088662	14.001	13.966	14.054	0	621	40	0.908462957275599	0.0263793478580419	0.908462957275599	549.913204425929	0	15.9680167420204						216	11	4	NaN	NaN	NaN	0.00010119	1	27949	70.806	65.989	1	48917			1600	74	1357	1379	1600	1600		
ATAAFILANEHNVALFK	17	Unmodified	_ATAAFILANEHNVALFK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.499061	1828.98357	1.4921	0.001366	0.62903	0.00057587	2.1211	0.0019419	916.00116437447	14.001	0.20394	14.001	13.957	14.161	0	141	46	1.2295923935727	0.0297817529200186	1.2295923935727	496.202138116715	0	12.0184294836427						771	24	5	NaN	NaN	NaN	1.613E-34	1	27950	239.98	220.42	1	411200			1601	74	1357	1379	1601	1601		
ATAAPAGAPPQPQDLEFTK	19	Unmodified	_ATAAPAGAPPQPQDLEFTK_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.486347	1908.95814	2.6832	0.0025637	-1.0482	-0.0010015	1.635	0.0015622	955.485259769676	10.002	0.3458	10.002	9.8952	10.241	0	255	88	1.15396378101328	0.0579430530129619	1.15396378101328	465.535347434862	0	23.3755510871753						1750	40	3	NaN	NaN	NaN	6.6955E-07	1	29820	93.649	79.286	1	435230			1602	811	1358	1380	1602	1602		
ATAATEEPFPFHGLLPK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATAATEEPFPFHGLLPK_			1	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.483076	1866.9516	1.2178	0.001138	-1.9808	-0.0018511	-0.76304	-0.00071305	935.483696125538	17.184	0.17734	17.184	17.078	17.255	0	192	130	1.1958073123591	0.0856679841463903	1.1958073123591	482.494305415217	0	34.5660325704897						1567	21	6	NaN	NaN	NaN	8.6025E-07	1	28869	110.44	98.76	1	442050			1603	883	1359	1381	1603	1603		
ATADDELSFK	10	Unmodified	_ATADDELSFK_			0	0	0	P62993	P62993	P62993	GRB2	Growth factor receptor-bound protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.761486	1095.50842	0.27274	0.00014967	4.2092	0.0023098	4.4819	0.0024595	548.764652121968	7.1014	0.24831	7.1014	7.0126	7.261	0	663	52	0.880024865079826	0.0345535384849188	0.880024865079826	356.917836736325	0	14.0141201652341						457	29	3	NaN	NaN	NaN	0.034901	1	6590	36.24	26.161	1	135160			1604	1420	1360	1382	1604	1604		
ATAENEFVVLK	11	Unmodified	_ATAENEFVVLK_			0	0	0	P78386;CON__P78386	P78386	P78386	KRT85	Keratin, type II cuticular Hb5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.829703	1219.64485	1.7017	0.0010394	0.57635	0.00035205	2.278	0.0013915	610.830055532723	10.073	0.3546	10.073	9.8776	10.232	0	546	76	0.959108205975751	0.0505821658502509	0.959108205975751	388.500038499954	0	20.4890055760094						1211	31	4	NaN	NaN	NaN	0.008086	1	10013	56.202	0	1	1259600		+	1605	33	1361	1383	1605	1605		
ATAEQISSQTGNK	13	Unmodified	_ATAEQISSQTGNK_			0	0	0	Q16698	Q16698	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.830963	1333.64737	2.4261	0.0016203	-2.9495	-0.0019698	-0.52333	-0.0003495	667.828865265388	2.7119	0.18624	2.7119	2.6941	2.8804	0	591	34	0.928742107665821	0.0222838959578864	0.928742107665821	375.839776909253	0	9.01776113772866						262	22	3	NaN	NaN	NaN	0.0050984	1	13390	66.953	45.865	1	52886			1606	1900	1362	1384	1606	1606		
ATAEVLNIGK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATAEVLNIGK_			1	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.298039	1056.58152	0.2643	0.00013989	-0.83561	-0.00044229	-0.57131	-0.00030239	529.297637914954	12.999	0.14187	12.999	12.955	13.096	0	639	37	0.896281965493857	0.0243755060720344	0.896281965493857	363.677674054523	0	9.89066799675572						386	17	4	NaN	NaN	NaN	8.4669E-08	1	5635	150.24	121.14	1	181760			1607	802	1363	1385	1607	1607		
ATAFNEQVDK	10	Unmodified	_ATAFNEQVDK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.774928	1121.5353	1.4183	0.00079676	-1.7305	-0.00097212	-0.31217	-0.00017537	561.773387320588	4.2637	0.18622	4.2637	4.2283	4.4145	0	672	52	0.873923798053065	0.0345727248070983	0.873923798053065	354.341218654971	0	14.0178599869485						345	22	4	NaN	NaN	NaN	0.024276	1	7298	32.549	26.318	1	105470			1608	865	1364	1386	1608	1608		
ATAGAYIASQTVK	13	Unmodified	_ATAGAYIASQTVK_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.845884	1279.67722	2.6788	0.0017167	-1.051	-0.00067353	1.6278	0.0010432	640.845258167596	6.0461	0.23942	6.0461	5.9929	6.2323	0	462	43	1.01562323939346	0.0282067707809603	1.01562323939346	411.176212669578	0	11.4195429284196						588	28	4	NaN	NaN	NaN	0.00013044	1	11752	103.69	82.598	1	311160			1609	875	1365	1387	1609	1609		
ATAGDTHLGGEDFDNR	16	Unmodified	_ATAGDTHLGGEDFDNR_			0	0	0	P0DMV8;P0DMV9;P17066;P48741	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.248407	1674.72339	-0.25908	-0.00014489	2.165	0.0012108	1.9059	0.0010659	559.249695234007	5.1859	0.54087	5.1859	5.0972	5.6381	0	792	103	0.792332785124922	0.0694778172789207	0.792332785124922	479.948937130169	0	42.0856049164805						2589	62	6	NaN	NaN	NaN	1.0725E-06	1	23748	128.57	114.21	1	2686300			1610	618;734	1366	1388	1610	1610		
ATAGDTHLGGEDFDNR	16	Unmodified	_ATAGDTHLGGEDFDNR_			0	0	0	P0DMV8;P0DMV9;P17066;P48741	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.368972	1674.72339	3.3135	0.0027779	-0.75018	-0.00062893	2.5633	0.002149	838.368498404812	5.1859	0.47882	5.1859	5.0972	5.576	0	387	184	1.06589869032374	0.122740306233526	1.06589869032374	430.441592985326	0	49.5661861847485						2627	55	6	NaN	NaN	NaN	1.1018E-17	1	23749	172.92	168.09	1	1598200			1611	618;734	1366	1388	1611	1611		
ATAPVPTVGEGYGYGHESELSQASAAAR	28	Unmodified	_ATAPVPTVGEGYGYGHESELSQASAAAR_			0	0	0	Q9BWF3	Q9BWF3	Q9BWF3	RBM4	RNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	926.11061	2775.31	1.9923	0.0018451	0.66324	0.00061424	2.6556	0.0024594	926.445765209594	9.6736	0.079804	9.6736	9.6381	9.7179	0	447	46	1.02569221487577	0.0301902523079756	1.02569221487577	619.280181380445	0	18.2279095561516						393	10	5	NaN	NaN	NaN	0.00062912	1	37833	42.066	41.466	1	116590			1612	2778	1367	1389	1612	1612		
ATAPVSFNYYGVVTGPSASK	20	Unmodified	_ATAPVSFNYYGVVTGPSASK_			0	0	0	Q5VW32	Q5VW32	Q5VW32	BROX	BRO1 domain-containing protein BROX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.50728	2015.00001	1.5742	0.0015876	-4.7511	-0.0047915	-3.1769	-0.0032039	1009.00378217611	13.185	0.14188	13.185	13.123	13.265	0	180	49	1.203763835057	0.0318304689315978	1.203763835057	485.441373968957	0	12.8362608364119						426	17	4	NaN	NaN	NaN	0.011677	1	31895	60.324	56.018	1	94730			1613	2011	1368	1390	1613	1613		
ATAPYNYSYIFK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATAPYNYSYIFK_			1	0	0	P61106	P61106	P61106	RAB14	Ras-related protein Rab-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.361367	1478.70818	0.91702	0.00067893	2.728	0.0020197	3.645	0.0026986	740.363172853097	16.528	0.13298	16.528	16.475	16.608	0	369	46	1.07793901817685	0.0300863062965449	1.07793901817685	435.777024563628	0	12.1629524647815						335	16	4	NaN	NaN	NaN	0.00046335	1	17852	48.785	38.697	1	94985			1614	1329	1369	1391	1614	1614		
ATASSSAQEMEQQLAER	17	Unmodified	_ATASSSAQEMEQQLAER_			0	0	0	Q9H9Q2	Q9H9Q2	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.923254	1835.83195	2.5301	0.0023249	-2.4264	-0.0022297	0.10367	9.526E-05	918.921050134971	9.1592	0.070933	9.1592	9.1326	9.2036	0	315	58	1.11400032671325	0.0380201832976437	1.11400032671325	449.542336040459	0	15.3426184952177						300	9	3	NaN	NaN	NaN	2.4832E-10	1	28121	128.68	122.98	1	71584			1615	2938	1370	1392	1615	1615		
ATAVMPDGQFK	11	Unmodified	_ATAVMPDGQFK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.789524	1163.56449	1.5296	0.00089145	-1.0424	-0.00060751	0.48722	0.00028395	582.788905249638	6.9328	0.65623	6.9328	6.72	7.3762	0	633	67	0.900343422309015	0.0446636605831482	0.900343422309015	364.893175222048	0	18.1013872300288						2307	75	5	NaN	NaN	NaN	0.00057443	1	8433	90.761	75.999	1	3978200			1616	1564	1371	1393	1616	1616		
ATAVMPDGQFK	11	Oxidation (M)	_ATAVM(Oxidation (M))PDGQFK_	ATAVM(1)PDGQFK	ATAVM(97)PDGQFK	0	1	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.786981	1179.55941	1.8507	0.0010934	-0.074287	-4.3888E-05	1.7764	0.0010495	590.787384142558	4.7159	0.29259	4.7159	4.5652	4.8578	0	633	67	0.900343422309015	0.0446574674330033	0.900343422309015	364.835201377547	0	18.0960017258161						1001	34	5	NaN	NaN	NaN	0.0019547	1	8863	97.277	86.449	1	682800			1617	1564	1371	1394	1617	1617	544	
ATAVVDGAFK	10	Unmodified	_ATAVVDGAFK_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.766374	977.518196	0.093318	4.5704E-05	-6.5901	-0.0032276	-6.4968	-0.0031819	489.76511823077	6.1702	0.28375	6.1702	5.984	6.2678	0	762	76	0.812773098473386	0.0510262358966912	0.812773098473386	330.135880755628	0	20.7260690111905						690	33	3	NaN	NaN	NaN	0.0010127	1	3787	65.404	50.869	1	314150			1618	936	1372	1395	1618	1618		
ATCIGNNSAAAVSMLK	16	Unmodified	_ATCIGNNSAAAVSMLK_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.397632	1606.78071	2.6537	0.0021346	-0.28243	-0.00022719	2.3713	0.0019075	804.397723709213	9.6824	0.15075	9.6824	9.6115	9.7622	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	437.075269568224	0	11.3429141841796						552	18	5	NaN	NaN	NaN	1.779E-08	1	21814	109.47	101.89	1	265830			1619	844	1373	1396	1619	1619		
ATDAEADVASLNR	13	Unmodified	_ATDAEADVASLNR_			0	0	0	CON__Q3SX28;P07951;P09493	CON__Q3SX28;P09493	CON__Q3SX28	TPM2;TPM1	Tropomyosin beta chain;Tropomyosin alpha-1 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.823138	1331.63172	1.6104	0.0010738	1.6702	0.0011137	3.2806	0.0021876	666.824355653143	6.4717	0.2128	6.4717	6.3653	6.5781	0	501	49	0.98941132619024	0.0322808922550346	0.98941132619024	400.397359005802	0	13.0635092434564						504	25	3	NaN	NaN	NaN	0.041295	1	13341	32.051	26.9	1	127300		+	1620	41;602	1374	1397	1620	1620		
ATDCVGHDVVTLLR	14	Unmodified	_ATDCVGHDVVTLLR_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.268085	1554.78243	-0.89199	-0.00046318	-1.4502	-0.00075305	-2.3422	-0.0012162	519.267841753238	10.844	0.079809	10.844	10.8	10.879	0	807	22	0.782101955086014	0.0143291466309899	0.782101955086014	474.051136067201	0	8.68524646322766						145	10	3	NaN	NaN	NaN	6.4041E-05	1	20201	61.194	54.931	1	34815			1621	765	1375	1398	1621	1621		
ATDCVGHDVVTLLR	14	Unmodified	_ATDCVGHDVVTLLR_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.268085	1554.78243	-0.80251	-0.00041672	-1.2526	-0.00065044	-2.0551	-0.0010672	519.267474230375	10.844	0.079809	10.844	10.8	10.879	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	488.926663527567	0	9.90874111471049						167	10	3	NaN	NaN	NaN	0.00014629	1	20203	68.548	64.566	1	39371			1622	765	1375	1398	1622	1622		
ATDCVGHDVVTLLR	14	Unmodified	_ATDCVGHDVVTLLR_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.398489	1554.78243	2.0994	0.0016341	1.5672	0.0012199	3.6666	0.0028541	778.399574272266	10.835	0.079809	10.835	10.8	10.879	0	312	25	1.11600111266355	0.016005187067117	1.11600111266355	450.959623283214	0	6.46746051456711						160	10	3	NaN	NaN	NaN	0.0058426	1	20206	45.183	44.034	1	32345			1623	765	1375	1398	1623	1623		
ATDGVTLTGINQTGDQSLPSK	21	Unmodified	_ATDGVTLTGINQTGDQSLPSK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.03185	2102.04914	2.9799	0.003135	-1.8168	-0.0019113	1.1631	0.0012237	1052.53085515619	10.073	0.079811	10.073	10.037	10.117	0	180	43	1.203763835057	0.0278401917044975	1.203763835057	485.303788663211	0	11.2239212691274						256	10	3	NaN	NaN	NaN	5.1714E-11	1	33341	73.262	68.181	1	49125			1624	3294	1376	1399	1624	1624		
ATDSWALAVDEQEAAVK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATDSWALAVDEQEAAVK_			1	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.446888	1844.87922	1.2623	0.0011657	0.48967	0.00045218	1.752	0.0016179	923.94901599784	15.97	0.11527	15.97	15.925	16.041	0	174	55	1.20774045859593	0.0357945375856583	1.20774045859593	487.352181588354	0	14.4439526366429						537	14	4	NaN	NaN	NaN	9.7979E-07	1	28346	119.43	109.41	1	138710			1625	3058	1377	1400	1625	1625		
ATDTINSQGQFPSYLETVTK	20	Unmodified	_ATDTINSQGQFPSYLETVTK_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1100.54205	2199.06954	1.5699	0.0017277	-1.1639	-0.001281	0.40595	0.00044676	1101.04199067945	13.558	0.079813	13.558	13.522	13.602	0	96	64	1.2593374219024	0.0416259332029663	1.2593374219024	507.561532829664	0	16.7768559041519						338	10	3	NaN	NaN	NaN	5.9988E-06	1	34666	61.503	59.402	1	61335			1626	2192	1378	1401	1626	1626		
ATDTSQGELVHPK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATDTSQGELVHPK_			1	0	0	Q5SSJ5	Q5SSJ5	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.854438	1423.69432	2.4022	0.0017124	-0.79283	-0.00056517	1.6094	0.0011473	712.853900416082	5.3366	0.17732	5.3366	5.2835	5.4608	0	426	64	1.03977710643793	0.0422605286599267	1.03977710643793	420.499926730455	0	17.0907294410125						640	21	6	NaN	NaN	NaN	1.9671E-11	1	16196	162.21	149.61	1	204820			1627	1980	1379	1402	1627	1627		
ATDVMIAGK	9	Unmodified	_ATDVMIAGK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.241678	904.468803	-0.70896	-0.00032133	-0.77766	-0.00035247	-1.4866	-0.0006738	453.241543945718	4.6627	0.133	4.6627	4.6184	4.7514	0	807	31	0.782101955086014	0.0204659356679318	0.782101955086014	318.033400312766	0	8.32225398329155						201	16	3	NaN	NaN	NaN	0.022723	1	2404	45.489	29.907	1	53417			1628	822	1380	1403	1628	1628		
ATEDGEEDEEMIESIENLEDLK	22	Unmodified	_ATEDGEEDEEMIESIENLEDLK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1269.5498	2537.08505	0.14259	0.00018102	-0.10235	-0.00012994	0.040238	5.1084E-05	1270.05193569019	18.772	0.053186	18.772	18.745	18.798	0	69	25	1.27715511956461	0.0158281976076649	1.27715511956461	514.31198816594	0	6.37403527259602						91	7	3	NaN	NaN	NaN	2.8576E-06	1	36979	47.844	47.565	1	15949			1629	1144	1381	1404	1629	1629		
ATEGMILTNHDHQIR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATEGMILTNHDHQIR_			1	0	0	Q9NQX3	Q9NQX3	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.293182	1776.85772	0.70883	0.00042055	-0.66939	-0.00039715	0.039441	2.34E-05	593.291999459777	8.3342	0.088714	8.3342	8.2898	8.3785	0	639	28	0.896281965493857	0.0182778248645526	0.896281965493857	542.659415000969	0	11.066421204875						190	11	3	NaN	NaN	NaN	2.505E-06	1	26593	95.138	80.163	1	47993			1630	3006	1382	1405	1630	1630		
ATEGMVVADK	10	Unmodified	_ATEGMVVADK_			0	0	0	Q99436	Q99436	Q99436	PSMB7	Proteasome subunit beta type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.755149	1019.49575	1.3984	0.00071422	-1.9076	-0.00097432	-0.50924	-0.0002601	510.754590335784	3.909	0.3281	3.909	3.8204	4.1484	0	720	58	0.841341816837976	0.0387314421406671	0.841341816837976	341.544747022233	0	15.7231226868734						584	38	3	NaN	NaN	NaN	0.060743	1	4728	29.755	3.5319	1	180030			1631	2638	1383	1406	1631	1631		
ATEMLIFGK	9	Unmodified	_ATEMLIFGK_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.272978	1008.5314	-1.0853	-0.00054838	-1.2839	-0.00064872	-2.3692	-0.0011971	505.27297449092	11.864	0.11531	11.864	11.828	11.944	0	705	43	0.851531465363931	0.0285250764845424	0.851531465363931	345.73130789192	0	11.5815003929456						311	14	3	NaN	NaN	NaN	0.047521	1	4476	31.952	23.189	1	94878			1632	341	1385	1407	1632	1632		
ATENDIANFFSPLNPIR	17	Unmodified	_ATENDIANFFSPLNPIR_			0	0	0	P31942	P31942	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.326769	1917.95848	-0.24926	-0.00015961	-0.42117	-0.00026969	-0.67044	-0.0004293	640.326487261695	18.639	0.07981	18.639	18.603	18.683	0	618	52	0.910492137470517	0.0344960752489721	0.910492137470517	550.949250248906	0	20.8739713532854						298	10	4	NaN	NaN	NaN	0.0011524	1	30016	88.734	77.762	1	67593			1633	930	1386	1408	1633	1633		
ATENDIANFFSPLNPIR	17	Unmodified	_ATENDIANFFSPLNPIR_			0	0	0	P31942	P31942	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.986515	1917.95848	1.723	0.0016541	-0.46059	-0.00044216	1.2624	0.0012119	960.487472435182	18.639	0.29267	18.639	18.479	18.772	0	294	106	1.12800004657306	0.0698928354045214	1.12800004657306	455.045572011277	0	28.1954113058455						1252	34	6	NaN	NaN	NaN	1.639E-25	1	30017	196.42	182.65	1	787980			1634	930	1386	1408	1634	1634		
ATENDIYNFFSPLNPMR	17	Unmodified	_ATENDIYNFFSPLNPMR_			0	0	0	P55795	P55795	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.97783	2027.94111	1.3149	0.0013346	-0.43919	-0.00044576	0.8757	0.00088881	1015.47855374985	18.993	0.12413	18.993	18.949	19.073	0	228	43	1.17191150690002	0.0279052631275762	1.17191150690002	472.575648211986	0	11.2528529103055						502	15	5	NaN	NaN	NaN	8.4614E-19	1	32107	168.43	164.35	1	184390			1635	1278	1387	1409	1635	1635		
ATENDIYNFFSPLNPMR	17	Oxidation (M)	_ATENDIYNFFSPLNPM(Oxidation (M))R_	ATENDIYNFFSPLNPM(1)R	ATENDIYNFFSPLNPM(110)R	0	1	0	P55795	P55795	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.97529	2043.93603	1.4425	0.0014757	0.11733	0.00012003	1.5598	0.0015957	1023.47694774764	17.725	0.15076	17.725	17.637	17.787	0	219	40	1.17788915118882	0.0258995717918544	1.17788915118882	474.960869242599	0	10.4434981159771						495	18	5	NaN	NaN	NaN	3.1301E-13	1	32419	109.47	103.89	1	92044			1636	1278	1387	1410	1636	1636	451	
ATENDIYNFFSPLNPVR	17	Unmodified	_ATENDIYNFFSPLNPVR_			0	0	0	P52597;P31943	P52597;P31943	P52597	HNRNPF;HNRNPH1	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.33029	1995.96904	-0.26348	-0.00017556	-0.37698	-0.00025119	-0.64046	-0.00042676	666.664504958787	18.55	0.11525	18.55	18.506	18.621	0	633	76	0.900343422309015	0.0507506493356152	0.900343422309015	544.655328612463	0	30.701186798584						621	14	5	NaN	NaN	NaN	1.0461E-06	1	31560	110.58	97.899	1	200960			1637	1217;931	1388	1411	1637	1637		
ATENDIYNFFSPLNPVR	17	Unmodified	_ATENDIYNFFSPLNPVR_			0	0	0	P52597;P31943	P52597;P31943	P52597	HNRNPF;HNRNPH1	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.991797	1995.96904	1.7136	0.0017119	-0.06185	-6.1787E-05	1.6517	0.0016501	999.493734592901	18.55	0.36361	18.55	18.408	18.772	0	246	235	1.1599488233373	0.155046867720705	1.1599488233373	467.802612059343	0	62.5297670484157						2280	42	6	NaN	NaN	NaN	1.4838E-25	1	31563	194.83	182.15	1	1704600			1638	1217;931	1388	1411	1638	1638		
ATEPVATSNPAGDPVGSTR	19	Unmodified	_ATEPVATSNPAGDPVGSTR_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.947586	1825.88062	2.4651	0.002253	-1.8061	-0.0016506	0.65908	0.00060236	913.946262266708	5.8953	0.097537	5.8953	5.8598	5.9573	0	324	76	1.1079963157843	0.0500196857301183	1.1079963157843	447.137755379825	0	20.1857079157685						529	12	3	NaN	NaN	NaN	8.0969E-11	1	27874	135.5	132.42	1	137590			1639	1920	1389	1412	1639	1639		
ATESGAQSAPLPMEGVDISPK	21	Unmodified	_ATESGAQSAPLPMEGVDISPK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.01207	2084.00958	1.2995	0.0013554	0.03759	3.9207E-05	1.3371	0.0013946	1043.51397572643	11.944	0.26603	11.944	11.846	12.112	0	186	121	1.1997861197946	0.0795326202009388	1.1997861197946	483.727624870634	0	32.0658197613793						2738	31	6	NaN	NaN	NaN	5.5234E-29	1	33082	149.57	147.03	1	1197800			1640	1530	1390	1413	1640	1640		
ATESGAQSAPLPMEGVDISPK	21	Oxidation (M)	_ATESGAQSAPLPM(Oxidation (M))EGVDISPK_	ATESGAQSAPLPM(1)EGVDISPK	ATESGAQSAPLPM(100)EGVDISPK	0	1	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.00953	2100.0045	2.7066	0.0028447	-2.6658	-0.0028018	0.04086	4.2945E-05	1051.50857141248	9.2834	0.13305	9.2834	9.2213	9.3544	0	198	82	1.1918274123006	0.0537471432722989	1.1918274123006	480.494629490378	0	21.6685850872811						809	16	4	NaN	NaN	NaN	2.0456E-10	1	33311	100.98	99.71	1	187350			1641	1530	1390	1414	1641	1641	540	
ATETVELHK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATETVELHK_			1	0	0	P82979	P82979	P82979	SARNP	SAP domain-containing ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.279846	1068.54514	0.55557	0.00029739	1.1641	0.00062312	1.7197	0.00092051	535.2805656656	5.4785	0.28374	5.4785	5.3721	5.6559	0	699	52	0.85560534332665	0.0346111454231356	0.85560534332665	347.12260051306	0	14.0418837957487						537	33	4	NaN	NaN	NaN	1.7982E-06	1	5922	137.84	118.59	1	285340			1642	1480	1391	1415	1642	1642		
ATFDISLVVPK	11	Unmodified	_ATFDISLVVPK_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.344989	1188.67542	0.71266	0.00042428	0.56328	0.00033535	1.2759	0.00075962	595.345392344839	15.402	0.17745	15.402	15.304	15.482	-1.7764E-15	528	43	0.971237000454584	0.0282887809416775	0.971237000454584	393.527646906003	0	11.4621018274708						266	21	3	NaN	NaN	NaN	0.0066007	1	9132	49.16	42.469	1	78781			1643	1277	1392	1416	1643	1643		
ATFDNVTSYLK	11	Unmodified	_ATFDNVTSYLK_			0	0	0	P57081	P57081	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.819335	1257.62412	0.85713	0.00053984	-0.3864	-0.00024336	0.47073	0.00029647	629.819344144649	12.21	0.15962	12.21	12.139	12.298	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.643367234178	0	8.1843270109074						229	19	3	NaN	NaN	NaN	0.0074457	1	11137	37.749	24.102	1	66661			1644	1292	1393	1417	1644	1644		
ATFISVQLK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATFISVQLK_			1	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.8055	1047.59645	-0.74584	-0.00039142	-1.4676	-0.00077022	-2.2135	-0.0011616	524.804609906921	16.369	0.15961	16.369	16.315	16.475	0	657	28	0.884090832094921	0.0182955837794518	0.884090832094921	358.770553684575	0	7.42448228648948						300	19	4	NaN	NaN	NaN	9.137E-05	1	5415	113.14	107.39	1	103840			1645	2370	1394	1418	1645	1645		
ATFYGEQVDYYK	12	Unmodified	_ATFYGEQVDYYK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.340632	1482.66671	2.0706	0.0015371	1.8703	0.0013884	3.9409	0.0029255	742.342042724505	9.6647	0.20396	9.6647	9.6115	9.8154	0	402	67	1.05585747106793	0.0442271274144359	1.05585747106793	426.839583410282	0	17.8792016520161						652	24	6	NaN	NaN	NaN	0.00034978	1	17984	101.82	96.667	1	409000			1646	1095	1395	1419	1646	1646		
ATFYLLIGNANAAKPDLDK	19	Unmodified	_ATFYLLIGNANAAKPDLDK_			0	0	1	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.04657	2034.07859	0.69195	0.00070444	0.44824	0.00045633	1.1402	0.0011608	1018.04665540167	13.983	0.09754	13.983	13.939	14.036	0	96	43	1.2593374219024	0.0277449111251171	1.2593374219024	507.819900747402	0	11.1879610410675						205	12	3	NaN	NaN	NaN	0.02454	1	32233	59.77	50.192	1	38013			1647	389	1396	1420	1647	1647		
ATFYLNVLEQK	11	Unmodified	_ATFYLNVLEQK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.358628	1324.7027	0.68084	0.00045164	6.161	0.004087	6.8419	0.0045386	663.864416247095	14.116	0.1596	14.116	14.01	14.169	0	489	37	0.997481546940468	0.0242039733351906	0.997481546940468	403.684902040272	0	9.79544798073829						250	19	4	NaN	NaN	NaN	0.0038702	1	13143	83.358	66.706	1	70919			1648	3452	1397	1421	1648	1648		
ATGEADVEFVTHEDAVAAMSK	21	Unmodified	_ATGEADVEFVTHEDAVAAMSK_			0	0	0	P31942	P31942	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.672164	2176.99466	0.91642	0.00066594	-2.7814	-0.0020212	-1.865	-0.0013552	726.668913234979	11.296	0.27496	11.296	11.199	11.474	0	600	34	0.922661313351899	0.0223055201987317	0.922661313351899	557.835998433061	0	13.4857958717541						366	32	4	NaN	NaN	NaN	1.0626E-05	1	34404	61.503	59.982	1	77082			1649	930	1398	1422	1649	1649		
ATGPVVEQAVR	11	Unmodified	_ATGPVVEQAVR_			0	0	0	Q9NY93	Q9NY93	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.814387	1125.61422	1.4224	0.00080197	-0.99144	-0.00055899	0.43097	0.00024299	563.813858521597	4.9376	0.16843	4.9376	4.8844	5.0529	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	365.860428556401	0	7.40751971565948						196	20	3	NaN	NaN	NaN	0.0045722	1	7415	61.48	53.006	1	60408			1650	3111	1399	1423	1650	1650		
ATGYLELSNWPEVAPDPSVR	20	Unmodified	_ATGYLELSNWPEVAPDPSVR_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1101.0473	2200.08005	0.4329	0.00047664	-0.53906	-0.00059353	-0.10617	-0.00011689	1101.54855023603	16.253	0.14188	16.253	16.191	16.333	0	120	37	1.2434810169581	0.0238009132368462	1.2434810169581	501.169343256823	0	9.59265794423027						386	17	4	NaN	NaN	NaN	0.04238	1	34679	18.396	12.192	1	72638			1651	61	1400	1424	1651	1651		
ATGYPLAFIAAK	12	Unmodified	_ATGYPLAFIAAK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.845156	1221.67576	1.5482	0.00094726	-0.98703	-0.00060391	0.56117	0.00034335	611.844752204636	13.93	0.30146	13.93	13.788	14.09	0	570	94	0.942920803299286	0.0627219108989425	0.942920803299286	381.936008998286	0	25.4059049727898						1569	35	5	NaN	NaN	NaN	0.0059777	1	10076	59.645	52.495	1	1287800			1652	922	1401	1425	1652	1652		
ATIAGGGVIPHIHK	14	Unmodified	_ATIAGGGVIPHIHK_			0	0	0	Q71UI9;P0C0S5	Q71UI9	Q71UI9	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.601616	1369.78302	-0.99616	-0.00045585	-0.50323	-0.00023028	-1.4994	-0.00068613	457.601346869475	6.3831	0.38132	6.3831	6.2234	6.6047	0	810	37	0.78005493425781	0.0245659645810058	0.78005493425781	473.372818674259	0	14.9077448093154						697	44	4	NaN	NaN	NaN	0.0068734	1	14499	26.579	16.491	1	321310			1653	616	1402	1426	1653	1653		
ATIAGGGVIPHIHK	14	Unmodified	_ATIAGGGVIPHIHK_			0	0	0	Q71UI9;P0C0S5	Q71UI9	Q71UI9	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.898786	1369.78302	2.6627	0.0018264	-0.35927	-0.00024642	2.3035	0.0015799	685.89873280319	6.3831	0.50549	6.3831	6.1879	6.6934	0	399	196	1.0578662689527	0.130951590935978	1.0578662689527	427.977390986653	0	52.9786437843567						3585	58	5	NaN	NaN	NaN	5.8251E-06	1	14500	113.46	84.813	1	2881200			1654	616	1402	1426	1654	1654		
ATIDPELNEIHVLSGLSK	18	Unmodified	_ATIDPELNEIHVLSGLSK_			0	0	0	Q9UL63	Q9UL63	Q9UL63	MKLN1	Muskelin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.017712	1935.03131	-0.9134	-0.00059007	1.4793	0.00095563	0.56587	0.00036556	646.352778833799	14.781	0.044345	14.781	14.755	14.799	0	630	25	0.902373728295776	0.0162458284325523	0.902373728295776	546.002130087529	0	9.82991486904484						75	6	2	NaN	NaN	NaN	0.067609	1	30424	2.1017	0.62733	1	14890			1655	3275	1403	1427	1655	1655		
ATIELCSTHANDASALR	17	Unmodified	_ATIELCSTHANDASALR_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.444157	1828.87376	2.7743	0.0025398	-3.4456	-0.0031542	-0.67123	-0.00061447	915.941338334094	7.1989	0.1596	7.1989	7.1457	7.3053	0	288	100	1.13199748998575	0.0659352175992063	1.13199748998575	456.817925093115	0	26.6081767501195						862	19	4	NaN	NaN	NaN	8.8029E-14	1	27932	167.01	147.46	1	292610			1656	1264	1404	1428	1656	1656		
ATIELCSTHANDASALR	17	Unmodified	_ATIELCSTHANDASALR_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.631863	1828.87376	0.63378	0.00038701	0.26474	0.00016166	0.89853	0.00054867	610.632272081662	7.19	0.12414	7.19	7.1545	7.2787	0	654	106	0.886123392477847	0.071228642485013	0.886123392477847	536.390802100424	0	43.1163300725251						1044	15	5	NaN	NaN	NaN	3.3174E-10	1	27933	102.57	89.392	1	361790			1657	1264	1404	1428	1657	1657		
ATILCTSYVQFK	12	Unmodified	_ATILCTSYVQFK_			0	0	0	P35244	P35244	P35244	RPA3	Replication protein A 14 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.871045	1429.72754	1.7516	0.0012539	-0.0091479	-6.5487E-06	1.7424	0.0012474	715.871418677483	12.476	0.24824	12.476	12.369	12.618	0	405	37	1.05384839605172	0.0241138939536367	1.05384839605172	426.173239193999	0	9.75158887588003						460	29	4	NaN	NaN	NaN	5.0906E-05	1	16385	78.932	69.955	1	158230			1658	963	1405	1429	1658	1658		
ATISNDGATILK	12	Unmodified	_ATISNDGATILK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.33261	1202.65067	1.5815	0.00095258	0.52139	0.00031405	2.1029	0.0012666	602.332789566105	7.2432	0.25714	7.2432	7.1811	7.4383	0	585	52	0.932794566565362	0.034438755237733	0.932794566565362	377.901072993869	0	13.9520994476125						755	30	5	NaN	NaN	NaN	2.1243E-05	1	9550	110.88	90.651	1	800690			1659	2679	1406	1430	1659	1659		
ATISNPITGDLETVHYR	17	Unmodified	_ATISNPITGDLETVHYR_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.658407	1885.95339	0.18535	0.00011671	-0.94108	-0.00059256	-0.75573	-0.00047585	629.991979746273	11.518	0.11527	11.518	11.456	11.571	0	633	22	0.900343422309015	0.0142141138880033	0.900343422309015	544.874482095084	0	8.602170850878						218	14	4	NaN	NaN	NaN	0.00092651	1	29287	39.166	37.324	1	48226			1660	681	1407	1431	1660	1660		
ATLECHPLTMTDPIEEHR	18	Unmodified	_ATLECHPLTMTDPIEEHR_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	538.255582	2148.99322	0.2608	0.00014038	0.96536	0.00051961	1.2262	0.00065999	538.256260962486	8.8665	0.11539	8.8665	8.8221	8.9375	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	697.987414657846	0	13.1263398126841						220	14	5	NaN	NaN	NaN	0.045065	1	34003	29.98	27.996	1	59592			1661	2664	1408	1432	1661	1661		
ATLENITNLRPVGEDFR	17	Unmodified	_ATLENITNLRPVGEDFR_			0	0	1	Q9NWV4	Q9NWV4	Q9NWV4	C1orf123	UPF0587 protein C1orf123	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.009439	1944.00649	0.71705	0.00046537	-1.2357	-0.00080201	-0.5187	-0.00033664	649.343012130253	12.697	0.12416	12.697	12.653	12.777	0	624	43	0.906433495720521	0.0284223196233265	0.906433495720521	548.440585106113	0	17.1970185103313						412	15	4	NaN	NaN	NaN	0.00050992	1	30607	50.641	41.485	1	125310			1662	3087	1409	1433	1662	1662		
ATLPSPDK	8	Unmodified	_ATLPSPDK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	414.726718	827.438883	-0.22206	-9.2094E-05	0.603	0.00025008	0.38094	0.00015798	414.726875216958	3.714	0.31035	3.714	3.5189	3.8292	0	849	52	0.753417699604308	0.0348575892727974	0.753417699604308	306.795403914017	0	14.1941823055568						477	36	2	NaN	NaN	NaN	0.051106	1	1270	25.254	18.491	1	186450			1663	804	1410	1434	1663	1663		
ATLQAALCLENFSSQVVER	19	Unmodified	_ATLQAALCLENFSSQVVER_			0	0	0	P59998	P59998	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.54133	2135.0681	-0.80855	-0.00086397	0.69834	0.0007462	-0.11021	-0.00011776	1069.04283913612	16.874	0.10646	16.874	16.839	16.945	0	60	28	1.28308947459206	0.0178055038448577	1.28308947459206	517.231825274116	0	7.17765474346913						152	13	3	NaN	NaN	NaN	4.4469E-06	1	33817	75.969	74.698	1	26007			1664	1301	1411	1435	1664	1664		
ATLQEILPEVLK	12	Unmodified	_ATLQEILPEVLK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.403035	1352.79152	0.48106	0.00032587	0.33417	0.00022637	0.81524	0.00055224	677.403179187745	17.202	0.29261	17.202	17.051	17.344	0	489	52	0.997481546940468	0.0343008202901166	0.997481546940468	403.598384126668	0	13.8787085192429						977	34	4	NaN	NaN	NaN	6.2668E-08	1	13991	122.51	106.63	1	429970			1665	2698	1412	1436	1665	1665		
ATLWYVPLSLK	11	Unmodified	_ATLWYVPLSLK_			0	0	0	O00154	O00154	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.876456	1289.73836	0.030352	1.9604E-05	-2.2513	-0.0014541	-2.221	-0.0014345	645.875050862402	17.255	0.09753	17.255	17.229	17.326	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.809387913078	0	8.99596795864545						255	12	3	NaN	NaN	NaN	0.0050055	1	12069	44.57	30.575	1	105520			1666	53	1413	1437	1666	1666		
ATLYVTAIEDR	11	Unmodified	_ATLYVTAIEDR_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.33261	1250.65067	1.3649	0.00085489	1.4293	0.0008952	2.7942	0.0017501	626.33343581235	10.232	0.18622	10.232	10.161	10.347	0	489	49	0.997481546940468	0.032276430046501	0.997481546940468	403.931579167369	0	13.0703865134724						570	22	4	NaN	NaN	NaN	8.0391E-07	1	10939	85.622	82.52	1	271980			1667	2681	1414	1438	1667	1667		
ATMEAYSR	8	Unmodified	_ATMEAYSR_			0	0	0	P20073	P20073	P20073	ANXA7	Annexin A7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.713285	927.412016	-0.17554	-8.1576E-05	-4.5711	-0.0021242	-4.7466	-0.0022058	464.711401938786	3.1198	0.18617	3.1198	3.0045	3.1907	0	762	37	0.812773098473386	0.0245215525463975	0.812773098473386	330.383202789673	0	9.96773771532418						220	22	2	NaN	NaN	NaN	0.066447	1	2815	38.322	32.574	1	45359			1668	777	1415	1439	1668	1668		
ATNDEIFSILK	11	Unmodified	_ATNDEIFSILK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.834985	1249.65542	0.77309	0.00048382	2.3093	0.0014452	3.0824	0.0019291	625.835121955929	15.003	0.18623	15.003	14.95	15.136	0	549	55	0.957085760909907	0.0363914316100816	0.957085760909907	387.576614559211	0	14.7368902960058						564	22	4	NaN	NaN	NaN	0.0050639	1	10917	78.932	70.458	1	218050			1669	1583	1416	1440	1669	1669		
ATNFLAHEK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATNFLAHEK_			1	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.774731	1071.53491	1.4595	0.00078344	-0.52386	-0.00028119	0.93567	0.00050225	536.774685857733	8.2898	0.31934	8.2898	8.21	8.5293	0	648	61	0.890187667287968	0.0406484069793801	0.890187667287968	361.13997515642	0	16.4906403740737						1040	37	4	NaN	NaN	NaN	4.1991E-09	1	5991	200.11	125.62	1	1810700			1670	890	1417	1441	1670	1670		
ATNIEQIFR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATNIEQIFR_			1	0	0	P18583	P18583	P18583	SON	Protein SON	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.301113	1132.58767	-0.44699	-0.00025358	-1.5465	-0.00087734	-1.9935	-0.0011309	567.300283415264	16.901	0.12417	16.901	16.856	16.98	0	606	28	0.918606045818476	0.0182524998058907	0.918606045818476	372.413952845219	0	7.39978321823673						239	15	3	NaN	NaN	NaN	0.00028999	1	7608	114.64	81.243	1	75008			1671	754	1418	1442	1671	1671		
ATNIEVLSNTFQFTNEAR	18	Unmodified	_ATNIEVLSNTFQFTNEAR_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.01072	2054.00688	1.6544	0.0017008	-0.51419	-0.00052859	1.1403	0.0011722	1028.51212807834	15.34	0.14185	15.34	15.304	15.446	0	207	70	1.18585551256002	0.0457720210854262	1.18585551256002	478.157332891831	0	18.4560659300121						569	17	4	NaN	NaN	NaN	3.2402E-14	1	32595	190.06	180.04	1	134150			1672	344	1419	1443	1672	1672		
ATNVVMNYSEIESK	14	Unmodified	_ATNVVMNYSEIESK_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.882338	1583.75012	1.6073	0.0012744	-0.59254	-0.00046981	1.0147	0.00080455	792.881477690337	9.4164	0.24832	9.4164	9.2745	9.5228	0	414	52	1.04781950764076	0.0341637123767462	1.04781950764076	423.340084160348	0	13.8028245965432						635	29	5	NaN	NaN	NaN	9.9581E-06	1	21075	110.58	103.83	1	210860			1673	1763	1420	1444	1673	1673		
ATPLAVNSAASLWGPYK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATPLAVNSAASLWGPYK_			1	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.469969	1786.92539	1.1604	0.0010379	0.51536	0.00046098	1.6757	0.0014989	894.972241798381	18.594	0.08867	18.594	18.55	18.639	0	180	40	1.203763835057	0.0258569287367985	1.203763835057	485.865062680417	0	10.4364144656604						335	11	4	NaN	NaN	NaN	2.8254E-10	1	26904	110.91	96.543	1	77786			1674	2422	1422	1445	1674	1674		
ATQELIPIEDFITPLK	16	Unmodified	_ATQELIPIEDFITPLK_			0	0	0	Q9NQ50	Q9NQ50	Q9NQ50	MRPL40	39S ribosomal protein L40, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.50876	1827.00297	1.4139	0.001293	-0.44496	-0.00040692	0.96895	0.00088611	915.009628111202	19.552	0.10639	19.552	19.499	19.605	0	279	40	1.13799159301878	0.0259708783379724	1.13799159301878	459.24037612158	0	10.4806362448596						376	13	4	NaN	NaN	NaN	0.0032242	1	27906	36.46	28.884	1	123900			1675	2996	1423	1446	1675	1675		
ATQFTGATGAIMTTETTK	18	Unmodified	_ATQFTGATGAIMTTETTK_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.451116	1828.88768	2.1283	0.0019483	-0.41748	-0.00038219	1.7108	0.0015662	915.450676510202	9.5406	0.17733	9.5406	9.4962	9.6736	0	255	58	1.15396378101328	0.0379261358525331	1.15396378101328	465.682391096099	0	15.3051022219562						702	21	4	NaN	NaN	NaN	7.9195E-11	1	27936	129.04	109.15	1	189980			1676	1722	1424	1447	1676	1676		
ATQLLEGLVQELQK	14	Unmodified	_ATQLLEGLVQELQK_			0	0	0	P51692	P51692	P51692	STAT5B	Signal transducer and activator of transcription 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.445963	1568.87737	0.65945	0.00051796	0.91712	0.00072035	1.5766	0.0012383	785.446111091763	17.929	0.053204	17.929	17.912	17.965	0	312	31	1.11600111266355	0.020009239153943	1.11600111266355	450.923863188497	0	8.08479787016012						116	7	3	NaN	NaN	NaN	0.0060296	1	20644	62.705	47.557	1	22048			1677	1197	1425	1448	1677	1677		
ATQMPEGGQGAPPMYQLYK	19	Unmodified	_ATQMPEGGQGAPPMYQLYK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.660654	2065.96013	0.06846	4.7214E-05	0.23394	0.00016134	0.3024	0.00020855	689.995150772246	11.163	0.10642	11.163	11.119	11.225	0	657	40	0.884090832094921	0.0264159589549013	0.884090832094921	534.698421870236	0	15.9763805398881						310	13	4	NaN	NaN	NaN	0.0010932	1	32805	41.87	41.058	1	51510			1678	1465	1426	1449	1678	1678		
ATQMPEGGQGAPPMYQLYK	19	Unmodified	_ATQMPEGGQGAPPMYQLYK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.98734	2065.96013	2.2317	0.0023076	-1.4518	-0.0015012	0.7799	0.00080641	1034.48792055006	11.154	0.14187	11.154	11.11	11.252	0	201	85	1.18983705239708	0.0557186520213577	1.18983705239708	479.744122898999	0	22.4658458813738						898	17	5	NaN	NaN	NaN	2.0837E-19	1	32806	146.48	140.86	1	189370			1679	1465	1426	1449	1679	1679		
ATQPETTEEVTDLK	14	Unmodified	_ATQPETTEEVTDLK_			0	0	0	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.383225	1560.7519	2.1587	0.0016868	-1.0572	-0.00082609	1.1015	0.0008607	781.382774725723	6.5693	0.23057	6.5693	6.4629	6.6934	0	396	43	1.05987478976334	0.0281251167294885	1.05987478976334	428.265353338942	0	11.3645622767788						536	27	3	NaN	NaN	NaN	0.00028311	1	20361	72.327	60.971	1	132780			1680	5	1427	1450	1680	1680		
ATQQQHDFTLTQTADGR	17	Unmodified	_ATQQQHDFTLTQTADGR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.45611	1916.89767	3.1187	0.0029923	-1.9336	-0.0018552	1.1851	0.0011371	959.454320178476	5.576	0.14191	5.576	5.5405	5.6825	0	258	49	1.15196821829984	0.0319399906194668	1.15196821829984	464.716404616001	0	12.8849367268604						590	17	5	NaN	NaN	NaN	1.3295E-06	1	29985	59.77	57.787	1	184400			1681	1465	1428	1451	1681	1681		
ATQQQHDFTLTQTADGR	17	Unmodified	_ATQQQHDFTLTQTADGR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.973165	1916.89767	1.7493	0.0011195	0.81906	0.00052417	2.5684	0.0016437	639.973809925263	5.576	0.17738	5.576	5.5317	5.7091	0	609	64	0.916577990479294	0.0426128066183624	0.916577990479294	554.634067197485	0	25.785600892602						585	21	4	NaN	NaN	NaN	1.0201E-06	1	29986	109.47	96.25	1	181070			1682	1465	1428	1451	1682	1682		
ATQVEPLLPGGATLLQAEEHGGLVR	25	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATQVEPLLPGGATLLQAEEHGGLVR_			1	0	0	Q6PKG0	Q6PKG0	Q6PKG0	LARP1	La-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	866.801048	2597.38132	1.6732	0.0014503	0.47858	0.00041484	2.1517	0.0018651	867.470323764086	18.311	0.09752	18.311	18.266	18.364	0	273	97	1.14198628764525	0.0639064004223993	1.14198628764525	689.730253980757	0	38.5978170414162						539	12	4	NaN	NaN	NaN	0.00022564	1	37236	50.819	48.051	1	125420			1683	2079	1429	1452	1683	1683		
ATSFLLALEPELEAR	15	Unmodified	_ATSFLLALEPELEAR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.451245	1658.88794	1.9934	0.0016555	-0.52391	-0.00043508	1.4695	0.0012204	830.450796086462	18.257	0.14186	18.257	18.213	18.355	0	324	76	1.1079963157843	0.0500403506587732	1.1079963157843	447.476914809979	0	20.2093647874156						863	17	4	NaN	NaN	NaN	0.00010753	1	23301	82.437	65.445	1	316610			1684	518	1430	1453	1684	1684		
ATSFLLALEPELEAR	15	Unmodified	_ATSFLLALEPELEAR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.451245	1658.88794	1.6696	0.0013865	0.093598	7.7728E-05	1.7632	0.0014643	830.451424303803	18.266	0.18621	18.266	18.204	18.39	0	252	55	1.15595906938629	0.0359127357341398	1.15595906938629	466.847216004012	0	14.5037667341216						650	22	5	NaN	NaN	NaN	4.3386E-06	1	23302	90.306	62.717	1	229580			1685	518	1430	1453	1685	1685		
ATSHVGEIEQELALAR	16	Unmodified	_ATSHVGEIEQELALAR_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.303964	1722.89006	0.20341	0.00011702	-0.95317	-0.00054836	-0.74976	-0.00043134	575.302897980126	11.11	0.12413	11.11	11.048	11.172	0	666	52	0.877991458330206	0.0345871250376812	0.877991458330206	531.714081682741	0	20.9460596147853						349	15	4	NaN	NaN	NaN	9.9141E-07	1	25132	160.98	141.42	1	87114			1686	914	1431	1454	1686	1686		
ATSILEFYR	9	Unmodified	_ATSILEFYR_			0	0	0	P09001	P09001	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.292756	1098.57096	0.15129	8.3253E-05	-1.4769	-0.00081272	-1.3256	-0.00072947	550.291877568328	12.68	0.0798	12.68	12.644	12.724	0	645	40	0.892219381832517	0.0264086306406944	0.892219381832517	361.851146701242	0	10.7103628039529						210	10	3	NaN	NaN	NaN	0.0033576	1	6670	87.251	69.557	1	70610			1687	594	1432	1455	1687	1687		
ATSNVFAMFDQSQIQEFK	18	Unmodified	_ATSNVFAMFDQSQIQEFK_			0	0	0	P19105;O14950;P24844	P19105	P19105	MYL12A;MYL12B;MYL9	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.666573	2089.97789	-0.18638	-0.00013003	-1.2125	-0.0008459	-1.3988	-0.00097593	698.000656205607	17.583	0.062073	17.583	17.557	17.619	0	603	43	0.920633820089869	0.0283908138186021	0.920633820089869	556.75695888863	0	17.1694574075882						263	8	4	NaN	NaN	NaN	4.833E-07	1	33181	117.41	114.12	1	51565			1688	128	1433	1456	1688	1688		
ATSNVFAMFDQSQIQEFK	18	Unmodified	_ATSNVFAMFDQSQIQEFK_			0	0	0	P19105;O14950;P24844	P19105	P19105	MYL12A;MYL12B;MYL9	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.99622	2089.97789	1.6697	0.0017465	0.45174	0.00047252	2.1214	0.002219	1046.49842238069	17.592	0.29263	17.592	17.486	17.779	0	159	76	1.21767724410157	0.0496703314801898	1.21767724410157	490.931655082111	0	20.0256169359872						1348	34	6	NaN	NaN	NaN	7.4955E-26	1	33182	185.57	145.87	1	481060			1689	128	1433	1456	1689	1689		
ATSNVFAMFDQSQIQEFK	18	Oxidation (M)	_ATSNVFAM(Oxidation (M))FDQSQIQEFK_	ATSNVFAM(1)FDQSQIQEFK	ATSNVFAM(110)FDQSQIQEFK	0	1	0	P19105;O14950;P24844	P19105	P19105	MYL12A;MYL12B;MYL9	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.99368	2105.97281	2.2132	0.0023327	0.43032	0.00045356	2.6436	0.0027863	1054.49565938518	15.136	0.11531	15.136	15.092	15.207	0	168	55	1.21171599086077	0.0357798038579147	1.21171599086077	488.503761784433	0	14.4246415103296						504	14	4	NaN	NaN	NaN	2.7426E-06	1	33400	110.14	109.04	1	120660			1690	128	1433	1457	1690	1690	35	
ATSTATSGFAGAIGQK	16	Unmodified	_ATSTATSGFAGAIGQK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.375537	1466.73652	1.951	0.0014327	-1.2022	-0.00088289	0.74873	0.00054985	734.374412987984	7.128	0.053192	7.128	7.1014	7.1545	0	336	52	1.09998710857178	0.0340649398748598	1.09998710857178	444.724042893608	0	13.7724321167232						155	7	2	NaN	NaN	NaN	0.058754	1	17482	22.142	18.797	1	28336			1691	1195	1434	1458	1691	1691		
ATTAALLLEAQAATGFLVDPVR	22	Unmodified	_ATTAALLLEAQAATGFLVDPVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.414354	2227.22123	0.19051	0.00014163	-1.0955	-0.00081442	-0.905	-0.00067279	743.747870003369	20.049	0.026607	20.049	20.04	20.066	0	447	34	1.02569221487577	0.0221486894009117	1.02569221487577	620.039314780957	0	13.3890635029348						99	4	4	NaN	NaN	NaN	0.027904	1	34962	35.182	35.102	1	26406			1692	1816	1435	1459	1692	1692		
ATTADGSSILDR	12	Unmodified	_ATTADGSSILDR_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.801674	1205.58879	1.3957	0.0008427	0.58738	0.00035466	1.983	0.0011974	603.802160681784	5.9396	0.22175	5.9396	5.8775	6.0993	0	570	58	0.942920803299286	0.038485045404303	0.942920803299286	381.992932384878	0	15.5909332952629						376	26	4	NaN	NaN	NaN	0.0045375	1	9618	57.293	50.602	1	113740			1693	2731	1436	1460	1693	1693		
ATTATMATSGSAR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATTATMATSGSAR_			1	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.300984	1266.58741	2.1627	0.0013718	0.7599	0.00048201	2.9226	0.0018538	634.301644281072	5.6026	0.079934	5.6026	5.5671	5.6471	0	480	19	1.00353128488872	0.0120969682463072	1.00353128488872	406.325593727136	0	4.89801153087535						94	10	2	NaN	NaN	NaN	2.889E-05	1	11400	103.87	74.563	1	21655			1694	1008	1437	1461	1694	1694		
ATTGAEETLMHDQVK	15	Unmodified	_ATTGAEETLMHDQVK_			0	0	0	Q9NR09	Q9NR09	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.890694	1629.76684	2.9793	0.0024308	-1.0502	-0.00085683	1.9291	0.001574	815.889866205531	5.7711	0.062058	5.7711	5.7445	5.8066	0	333	25	1.10198982404297	0.0160206216424124	1.10198982404297	445.116991310627	0	6.47106783457781						134	8	4	NaN	NaN	NaN	0.0001858	1	22463	63.908	51.89	1	25068			1695	3008	1438	1462	1695	1695		
ATTLPTDFNYNVDTLVQLHLK	21	Unmodified	_ATTLPTDFNYNVDTLVQLHLK_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.756668	2402.24818	0.4362	0.00034973	0.31633	0.00025362	0.75253	0.00060334	802.091951566244	17.246	0.088694	17.246	17.211	17.3	0	408	31	1.0518390438467	0.0200976833254141	1.0518390438467	635.558233727492	0	12.1437288252785						213	11	4	NaN	NaN	NaN	1.0319E-05	1	36362	47.27	46.254	1	42933			1696	1786	1439	1463	1696	1696		
ATTLSNAVSSLASTGLSLTK	20	Unmodified	_ATTLSNAVSSLASTGLSLTK_			0	0	0	Q13492	Q13492	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.525669	1921.03679	0.51221	0.0004925	0.4588	0.00044114	0.97101	0.00093365	961.526975669196	18.018	0.10642	18.018	17.974	18.08	0	126	37	1.23951419873743	0.0238074393659478	1.23951419873743	500.025645869694	0	9.60402894745965						352	13	4	NaN	NaN	NaN	2.4175E-07	1	30090	106.79	105.2	1	144210			1697	1672	1440	1464	1697	1697		
ATTPVIMVGPGTGVAPFIGFIQER	24	Unmodified	_ATTPVIMVGPGTGVAPFIGFIQER_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1229.66178	2457.309	0.44525	0.00054751	-1.0684	-0.0013138	-0.6232	-0.00076632	1230.16195119159	19.871	0.035465	19.871	19.853	19.889	0	66	28	1.27913350869533	0.0178055038448577	1.27913350869533	515.199851599051	0	7.17156799986702						91	5	4	NaN	NaN	NaN	0.0010681	1	36610	47.491	46.616	1	18183			1698	728	1441	1465	1698	1698		
ATTPVIMVGPGTGVAPFIGFIQER	24	Oxidation (M)	_ATTPVIM(Oxidation (M))VGPGTGVAPFIGFIQER_	ATTPVIM(1)VGPGTGVAPFIGFIQER	ATTPVIM(48)VGPGTGVAPFIGFIQER	0	1	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.441915	2473.30392	-0.25259	-0.0002085	-0.058514	-4.83E-05	-0.3111	-0.0002568	825.776247730544	19.268	0.062081	19.268	19.242	19.304	0	540	22	0.963152256458504	0.0141512395446776	0.963152256458504	581.8744185534	0	8.54926542159217						88	8	3	NaN	NaN	NaN	0.019294	1	36696	48.476	48.396	1	14573			1699	728	1441	1466	1699	1699	243	
ATVAPEDVSEVIFGHVLAAGCGQNPVR	27	Unmodified	_ATVAPEDVSEVIFGHVLAAGCGQNPVR_			0	0	0	Q9BWD1	Q9BWD1	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	931.804464	2792.39156	0.74017	0.00068969	0.30329	0.00028261	1.0435	0.0009723	932.139361433347	18.115	0.097518	18.115	18.071	18.169	0	435	55	1.03374239103424	0.0362108052293146	1.03374239103424	624.121586067402	0	21.8622602579806						566	12	5	NaN	NaN	NaN	0.0050296	1	37874	44.667	43.331	1	154190			1700	2777	1442	1467	1700	1700		
ATVGFESLEECYMAK	15	Unmodified	_ATVGFESLEECYMAK_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.889306	1733.76406	1.867	0.0016204	0.73573	0.00063854	2.6028	0.0022589	867.890313773925	13.708	0.14187	13.708	13.664	13.806	0	261	34	1.14997238118939	0.0219572303185152	1.14997238118939	464.263243267604	0	8.86450416339943						407	17	5	NaN	NaN	NaN	1.7782E-05	1	25426	105.94	93.361	1	141250			1701	626	1443	1468	1701	1701		
ATVLQTVFEDYVHSSER	17	Unmodified	_ATVLQTVFEDYVHSSER_			0	0	0	Q9H8H2	Q9H8H2	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.993566	1979.95887	-0.46356	-0.00030641	-0.076563	-5.0608E-05	-0.54012	-0.00035702	661.327682935363	17.371	0.133	17.371	17.317	17.45	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	553.280135261746	0	9.81743210408069						297	16	4	NaN	NaN	NaN	6.5699E-07	1	31283	78.157	65.474	1	80739			1702	2926	1444	1469	1702	1702		
ATVNLLGEEK	10	Unmodified	_ATVNLLGEEK_			0	0	0	Q00765	Q00765	Q00765	REEP5	Receptor expression-enhancing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.295496	1072.57644	1.9475	0.0010464	1.2959	0.00069626	3.2433	0.0017426	537.295644880713	7.7398	0.31931	7.7398	7.6422	7.9615	0	648	61	0.890187667287968	0.0406314919557856	0.890187667287968	361.135516052279	0	16.4835745929065						728	29	4	NaN	NaN	NaN	0.00076324	1	6023	97.277	53.543	1	381920			1703	1507	1445	1470	1703	1703		
ATVNTFGYIAK	11	Unmodified	_ATVNTFGYIAK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.819138	1183.62372	1.1512	0.00068244	1.3895	0.00082371	2.5407	0.0015062	592.819527879131	8.9553	0.1775	8.9553	8.8842	9.0617	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	383.713613380484	0	9.84147114524194						253	21	2	NaN	NaN	NaN	0.0040624	1	8979	55.235	36.898	1	117910			1704	343	1446	1471	1704	1704		
ATVPLQSNVIEAAPDMK	17	Unmodified	_ATVPLQSNVIEAAPDMK_			0	0	0	O75165	O75165	O75165	DNAJC13	DnaJ homolog subfamily C member 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.466569	1782.91859	1.3253	0.0011828	-1.6078	-0.0014349	-0.28254	-0.00025216	892.465158187227	11.864	0.079836	11.864	11.828	11.908	0	255	28	1.15396378101328	0.0179551284989976	1.15396378101328	465.77275366886	0	7.24720288544319						149	10	3	NaN	NaN	NaN	0.015182	1	26770	30.862	23.655	1	29400			1705	308	1447	1472	1705	1705		
ATVTPSPVK	9	Unmodified	_ATVTPSPVK_			0	0	0	Q9H1E3	Q9H1E3	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.263468	898.512382	-0.24296	-0.0001094	1.458	0.00065648	1.215	0.00054708	450.264016447654	3.3326	0.19518	3.3326	3.2883	3.4834	0	801	34	0.78619514174348	0.0225109626091257	0.78619514174348	319.729533268103	0	9.15474948429511						333	23	3	NaN	NaN	NaN	0.010077	1	2298	67.464	47.977	1	98457			1706	2857	1448	1473	1706	1706		
ATVYYQAPLEK	11	Unmodified	_ATVYYQAPLEK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.837528	1281.6605	1.2593	0.00080826	-0.49912	-0.00032035	0.76017	0.0004879	641.837212705676	7.6156	0.13294	7.6156	7.527	7.66	0	531	40	0.969216233931596	0.0262699700789047	0.969216233931596	392.381798363571	0	10.6352511871415						315	16	4	NaN	NaN	NaN	0.0066456	1	11816	36.514	30.251	1	66202			1707	2080	1449	1474	1707	1707		
ATYLEFIQQNEER	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))ATYLEFIQQNEER_			1	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.904659	1681.79476	1.1016	0.00092741	1.3211	0.0011122	2.4227	0.0020397	841.905631153291	18.24	0.10642	18.24	18.204	18.311	0	264	49	1.14797626962532	0.0319443832387405	1.14797626962532	463.570956301906	0	12.8996466898142						383	13	4	NaN	NaN	NaN	7.3684E-08	1	23957	115.41	104.62	1	112040			1708	1851	1450	1475	1708	1708		
AVAALLTIPEAEK	13	Unmodified	_AVAALLTIPEAEK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.387385	1324.76022	0.73213	0.00048569	-0.91071	-0.00060415	-0.17858	-0.00011847	663.387016567878	13.159	0.12416	13.159	13.105	13.23	0	495	43	0.993446994398923	0.0282379706445135	0.993446994398923	402.051951161026	0	11.4280190674124						349	15	3	NaN	NaN	NaN	0.00028004	1	13145	54.584	35.26	1	98052			1709	2175	1451	1476	1709	1709		
AVACDCLLQEHFYLR	15	Unmodified	_AVACDCLLQEHFYLR_			0	0	0	Q9NP92	Q9NP92	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.302801	1893.88657	0.70124	0.0004434	-1.2631	-0.00079868	-0.56189	-0.00035529	632.63630070253	12.768	0.10643	12.768	12.715	12.822	-1.7764E-15	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	542.399974809626	0	9.83279765471354						213	13	4	NaN	NaN	NaN	0.0038034	1	29461	23.931	23.124	1	49321			1710	2981	1452	1477	1710	1710		
AVACDCLLQEHFYLR	15	Unmodified	_AVACDCLLQEHFYLR_			0	0	0	Q9NP92	Q9NP92	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.950563	1893.88657	2.0869	0.0019783	0.28414	0.00026936	2.371	0.0022476	948.452333321677	12.768	0.053208	12.768	12.751	12.804	0	195	22	1.19381749893585	0.0139306072345817	1.19381749893585	481.640898947768	0	5.62024781621398						92	7	3	NaN	NaN	NaN	0.00023863	1	29463	47.57	45.181	1	15373			1711	2981	1452	1477	1711	1711		
AVADQVYGDQDMHEVVR	17	Unmodified	_AVADQVYGDQDMHEVVR_			0	0	0	Q96G74	Q96G74	Q96G74	OTUD5	OTU domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.635385	1930.88432	0.64767	0.00041751	1.2617	0.00081332	1.9093	0.0012308	644.970530993983	7.9172	0.062063	7.9172	7.8818	7.9438	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	547.238804154092	0	12.2824707451088						167	8	4	NaN	NaN	NaN	9.8152E-05	1	30317	72.031	65.654	1	39983			1712	2536	1453	1478	1712	1712		
AVADQVYGDQDMHEVVR	17	Unmodified	_AVADQVYGDQDMHEVVR_			0	0	0	Q96G74	Q96G74	Q96G74	OTUD5	OTU domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.449439	1930.88432	2.1114	0.0020405	-0.11536	-0.00011149	1.996	0.0019291	966.952156283325	7.9083	0.035476	7.9083	7.8995	7.935	0	198	25	1.1918274123006	0.0159239736524159	1.1918274123006	480.770996961975	0	6.42356821923596						75	5	3	NaN	NaN	NaN	0.00014436	1	30318	56.08	53.779	1	9799			1713	2536	1453	1478	1713	1713		
AVAFFLESIAMHDIIAAEK	19	Unmodified	_AVAFFLESIAMHDIIAAEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.699326	2075.07615	0.46674	0.00032331	-0.69207	-0.0004794	-0.22533	-0.00015609	693.032955835645	19.765	0.062073	19.765	19.747	19.809	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	571.486426795955	0	9.79392695000718						172	8	4	NaN	NaN	NaN	0.016621	1	32949	15.015	12.626	1	52709			1714	1465	1454	1479	1714	1714		
AVAFQNPQTHVIENLHAAAYR	21	Unmodified	_AVAFQNPQTHVIENLHAAAYR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	588.306729	2349.19781	0.37222	0.00021898	0.62537	0.00036791	0.99759	0.00058689	588.55789518255	10.25	0.16847	10.25	10.179	10.347	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	713.993535263931	0	19.6514556155171						554	20	5	NaN	NaN	NaN	0.022129	1	36035	25.922	23.176	1	179250			1715	811	1455	1480	1715	1715		
AVAFQNPQTHVIENLHAAAYR	21	Unmodified	_AVAFQNPQTHVIENLHAAAYR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	784.073214	2349.19781	1.5965	0.0012518	0.41241	0.00032336	2.0089	0.0015751	784.407352075026	10.25	0.16848	10.25	10.161	10.33	0	411	25	1.04982941439551	0.0160781459716195	1.04982941439551	634.426291843142	0	9.71624379029288						303	20	5	NaN	NaN	NaN	0.00091693	1	36036	54.912	51.272	1	74088			1716	811	1455	1480	1716	1716		
AVAFSPVTELK	11	Unmodified	_AVAFSPVTELK_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.329339	1160.64412	1.0859	0.00063126	-0.29515	-0.00017158	0.79075	0.00045969	581.328924198774	11.048	0.11528	11.048	10.995	11.11	0	570	40	0.942920803299286	0.0263172834355764	0.942920803299286	382.160291067758	0	10.6662411759943						246	14	2	NaN	NaN	NaN	0.047086	1	8364	44.57	29.807	1	83090			1717	744	1456	1481	1717	1717		
AVAGDASESALLK	13	Unmodified	_AVAGDASESALLK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.330067	1230.64558	1.3647	0.00084113	-0.098189	-6.0517E-05	1.2665	0.00078061	616.33026858621	7.0747	0.33702	7.0747	6.9062	7.2432	0	573	94	0.940896116921038	0.0626871921160739	0.940896116921038	381.084858397756	0	25.3897739625933						749	39	4	NaN	NaN	NaN	0.00659	1	10331	64.906	59.755	1	213330			1718	522	1457	1482	1718	1718		
AVAGNISDPGLQK	13	Unmodified	_AVAGNISDPGLQK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.343509	1268.67246	1.6125	0.0010245	0.6246	0.00039683	2.2371	0.0014213	635.343886438096	5.8864	0.16855	5.8864	5.8243	5.9929	0	546	58	0.959108205975751	0.0384158376205809	0.959108205975751	388.331992982036	0	15.5541352814279						525	20	3	NaN	NaN	NaN	1.4306E-16	1	11477	207.6	171.36	1	334610			1719	753	1458	1483	1719	1719		
AVAHHTDCTFIR	12	Unmodified	_AVAHHTDCTFIR_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.566465	1426.67757	0.26457	0.00012609	3.9703	0.0018921	4.2349	0.0020182	476.568809819319	3.2173	0.15077	3.2173	3.1818	3.3326	0	762	34	0.812773098473386	0.0224702728223195	0.812773098473386	493.031370694735	0	13.630556215851						235	18	2	NaN	NaN	NaN	0.011017	1	16277	43.168	36.905	1	80194			1720	1369	1459	1484	1720	1720		
AVALYFIDK	9	Unmodified	_AVALYFIDK_			0	0	0	P11387;Q969P6	P11387	P11387	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.294768	1038.57498	0.35428	0.00018433	-2.2256	-0.001158	-1.8713	-0.00097365	520.293632735409	12.751	0.15962	12.751	12.697	12.857	0	711	49	0.847456455381371	0.0326046192681035	0.847456455381371	343.94280862414	0	13.2326849998987						509	19	4	NaN	NaN	NaN	0.034151	1	5200	26.947	17.433	1	301390			1721	651	1460	1485	1721	1721		
AVANYDSVEEGEK	13	Unmodified	_AVANYDSVEEGEK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.822803	1409.63105	2.4569	0.0017341	-1.4226	-0.0010041	1.0343	0.00073003	705.821743096434	4.8578	0.24829	4.8578	4.7869	5.0351	0	504	46	0.987393073566096	0.0302821710490335	0.987393073566096	399.353445170753	0	12.2476951271343						640	29	5	NaN	NaN	NaN	0.00016249	1	15742	115.41	109.92	1	246280			1722	1195	1461	1486	1722	1722		
AVAQAGTVGTLLIVK	15	Unmodified	_AVAQAGTVGTLLIVK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.942859	1439.87116	1.941	0.0013993	1.01	0.00072816	2.951	0.0021275	720.943595173444	12.999	0.10642	12.999	12.955	13.061	0	321	31	1.10999792833052	0.0200175059687449	1.10999792833052	448.84964164334	0	8.09447490967671						247	13	4	NaN	NaN	NaN	0.00012237	1	16682	88.734	72.082	1	70130			1723	1932	1462	1487	1723	1723		
AVAQALEVIPR	11	Unmodified	_AVAQALEVIPR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.84823	1165.68191	1.6428	0.00095912	0.46198	0.00026973	2.1047	0.0012288	583.848632783488	11.083	0.22166	11.083	10.977	11.199	0	540	61	0.963152256458504	0.0404573198994148	0.963152256458504	390.340165281156	0	16.3962829661403						970	26	4	NaN	NaN	NaN	1.7676E-07	1	8496	158.57	144.03	1	535350			1724	1129	1463	1488	1724	1724		
AVASPEATVSQTDENK	16	Unmodified	_AVASPEATVSQTDENK_			0	0	0	Q641Q2;Q9Y4E1	Q641Q2	Q641Q2	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.897031	1645.77951	2.5766	0.0021228	-1.5538	-0.0012802	1.0228	0.00084266	823.896844118389	4.6893	0.12412	4.6893	4.6273	4.7514	0	384	34	1.06790610341098	0.0220815471089169	1.06790610341098	431.314483173476	0	8.91847237180542						198	15	2	NaN	NaN	NaN	0.00022341	1	22910	77.157	66.907	1	42397			1725	2016	1464	1489	1725	1725		
AVAVDSTGTYMATSGLDHQLK	21	Unmodified	_AVAVDSTGTYMATSGLDHQLK_			0	0	0	O15213	O15213	O15213	WDR46	WD repeat-containing protein 46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.356288	2164.04703	1.7546	0.0012674	-2.1329	-0.0015407	-0.37837	-0.00027332	722.690350056553	10.152	0.070924	10.152	10.117	10.188	0	465	37	1.01360860968299	0.0241839121258494	1.01360860968299	612.845461369694	0	14.6220154830035						171	9	3	NaN	NaN	NaN	0.020788	1	34239	39.587	39.587	1	49848			1726	155	1465	1490	1726	1726		
AVCGFHLGYLDGEVELVSGVVAR	23	Unmodified	_AVCGFHLGYLDGEVELVSGVVAR_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.41777	2446.23148	0.067966	5.5489E-05	0.73715	0.00060182	0.80512	0.00065731	816.752490412516	18.151	0.10639	18.151	18.115	18.222	0	504	22	0.987393073566096	0.0141297228120989	0.987393073566096	596.556029036358	0	8.53679406695358						204	13	4	NaN	NaN	NaN	0.00012813	1	36556	51.07	49.222	1	44062			1727	2647	1466	1491	1727	1727		
AVCLEFSPK	9	Unmodified	_AVCLEFSPK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.76806	1049.52157	0.49384	0.00025965	-0.45566	-0.00023957	0.038183	2.0075E-05	526.268890246609	9.0972	0.12413	9.0972	9.0528	9.177	0	633	52	0.900343422309015	0.0345343681296421	0.900343422309015	365.357275050481	0	14.0139665851922						351	15	3	NaN	NaN	NaN	0.011621	1	5455	34.781	15.294	1	63172			1728	2796	1467	1492	1728	1728		
AVCMLSNTTAIAEAWAR	17	Unmodified	_AVCMLSNTTAIAEAWAR_			0	0	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.306323	1863.89714	0.97104	0.00060429	-1.9275	-0.0011995	-0.95644	-0.0005952	622.305277038469	16.058	0.30149	16.058	16.005	16.307	0	579	49	0.936845902828289	0.032415189981154	0.936845902828289	567.014185531125	0	19.6188855504548						1019	35	6	NaN	NaN	NaN	0.00043412	1	28781	124.06	109.09	1	654240			1729	1447;1448	1468	1493	1729	1729		
AVCMLSNTTAIAEAWAR	17	Unmodified	_AVCMLSNTTAIAEAWAR_			0	0	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.955846	1863.89714	1.1281	0.0010525	-0.49929	-0.00046582	0.62881	0.00058665	933.457257764599	16.537	0.24822	16.537	16.448	16.697	0	243	40	1.16194328902838	0.0259316233489852	1.16194328902838	468.836228484589	0	10.4632339669411						269	29	2	NaN	NaN	NaN	0.0016126	1	28782	30.875	27.37	1	103700			1730	1447;1448	1468	1493	1730	1730		
AVCMLSNTTAIAEAWAR	17	Unmodified	_AVCMLSNTTAIAEAWAR_			0	0	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.955846	1863.89714	1.9786	0.0018459	1.3652	0.0012737	3.3438	0.0031196	932.957460378771	16.058	0.45222	16.058	15.97	16.422	0	240	241	1.16393748060522	0.159109808786526	1.16393748060522	469.640864770934	0	64.1997267354832						3805	52	7	NaN	NaN	NaN	4.1926E-45	1	28783	281.38	256.69	1	2986100			1731	1447;1448	1468	1493	1731	1731		
AVCMLSNTTAIAEAWAR	17	Oxidation (M)	_AVCM(Oxidation (M))LSNTTAIAEAWAR_	AVCM(1)LSNTTAIAEAWAR	AVCM(140)LSNTTAIAEAWAR	0	1	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.953303	1879.89205	2.2833	0.0021485	0.97124	0.0009139	3.2546	0.0030624	941.454921598284	13.646	0.23943	13.646	13.522	13.762	0	249	58	1.15795408347545	0.0379104952093297	1.15795408347545	467.197236469273	0	15.2956657329808						1383	28	6	NaN	NaN	NaN	1.6158E-09	1	29151	141.87	114.51	1	501330			1732	1447;1448	1468	1494	1732	1732	519	
AVCMLSNTTAVAEAWAR	17	Unmodified	_AVCMLSNTTAVAEAWAR_			0	0	0	Q9BQE3	Q9BQE3	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.948021	1849.88149	1.3408	0.0012415	1.4816	0.0013718	2.8223	0.0026133	926.451356481691	14.781	0.21282	14.781	14.684	14.897	0	246	106	1.1599488233373	0.0698255940678514	1.1599488233373	468.057664078993	0	28.1757296483959						1666	25	6	NaN	NaN	NaN	3.5769E-34	1	28483	200.82	184.06	1	813250			1733	2696	1469	1495	1733	1733		
AVCMLSNTTAVAEAWAR	17	Oxidation (M)	_AVCM(Oxidation (M))LSNTTAVAEAWAR_	AVCM(1)LSNTTAVAEAWAR	AVCM(80)LSNTTAVAEAWAR	0	1	0	Q9BQE3	Q9BQE3	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.945478	1865.8764	1.7929	0.0016744	-0.30064	-0.00028078	1.4922	0.0013937	933.945484542193	12.307	0.20395	12.307	12.201	12.405	0	267	43	1.14597988355104	0.0279474898102239	1.14597988355104	462.391478472153	0	11.2765340111307						659	24	5	NaN	NaN	NaN	0.00033431	1	28836	80.379	79.109	1	121630			1734	2696	1469	1496	1734	1734	621	
AVCVEAGMIALR	12	Unmodified	_AVCVEAGMIALR_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.338858	1288.66316	1.2034	0.0007766	1.131	0.0007299	2.3344	0.0015065	645.339906825888	12.192	0.088696	12.192	12.157	12.245	0	441	49	1.02971785871157	0.0322140561522897	1.02971785871157	416.851384316862	0	13.0409255194868						267	11	4	NaN	NaN	NaN	0.0010263	1	12024	72.042	54.646	1	69065			1735	746	1470	1497	1735	1735		
AVDALLTHCK	10	Unmodified	_AVDALLTHCK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.297516	1126.58048	1.5478	0.00087343	2.9052	0.0016394	4.453	0.0025128	564.298369296708	5.2835	0.3547	5.2835	5.2036	5.5583	0	600	67	0.922661313351899	0.0445956067149914	0.922661313351899	374.081973027412	0	18.0807543427757						967	41	5	NaN	NaN	NaN	0.00099128	1	7438	83.623	66.228	1	484300			1736	378	1471	1498	1736	1736		
AVDDGVNTFK	10	Unmodified	_AVDDGVNTFK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.264196	1064.51384	1.3793	0.00073552	1.2567	0.00067015	2.636	0.0014057	533.26466152974	5.5937	0.35471	5.5937	5.4962	5.8509	0	684	70	0.86578508874114	0.0468008560973249	0.86578508874114	351.269491921882	0	18.9882144617666						1075	41	4	NaN	NaN	NaN	0.00050416	1	5827	95.311	82.484	1	626720			1737	1174	1472	1499	1737	1737		
AVDDLNLHSYSNLPIWVNK	19	Unmodified	_AVDDLNLHSYSNLPIWVNK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.379532	2197.11677	0.20785	0.00015243	-0.25612	-0.00018784	-0.048279	-3.5407E-05	733.713806137613	15.216	0.088649	15.216	15.18	15.269	-1.7764E-15	615	94	0.912521036363781	0.0628785029158467	0.912521036363781	551.673224283679	0	38.0137937202438						721	11	5	NaN	NaN	NaN	9.9639E-11	1	34647	118.26	114.62	1	178520			1738	1737	1473	1500	1738	1738		
AVDHINSTIAPALISSGLSVVEQEK	25	Unmodified	_AVDHINSTIAPALISSGLSVVEQEK_			0	0	0	P09104	P09104	P09104	ENO2	Gamma-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.128942	2577.365	1.3627	0.0011721	-0.84216	-0.00072437	0.52056	0.00044775	860.461018844871	17.264	0.26602	17.264	17.122	17.388	0	279	70	1.13799159301878	0.0459864455823558	1.13799159301878	687.345977547048	0	27.7757749588199						673	31	4	NaN	NaN	NaN	0.030714	1	37153	63.355	63.29	1	135470			1739	596	1474	1501	1739	1739		
AVDIPHMDIEALK	13	Unmodified	_AVDIPHMDIEALK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.590277	1450.749	0.18156	8.7984E-05	-1.8556	-0.00089918	-1.674	-0.0008112	484.58958688683	12.928	0.13303	12.928	12.839	12.972	0	738	34	0.829104889055312	0.0224390480115776	0.829104889055312	502.858303558125	0	13.6094501015643						305	16	4	NaN	NaN	NaN	0.072125	1	17009	15.616	14.113	1	89926			1740	1413	1475	1502	1740	1740		
AVDIPHMDIEALK	13	Unmodified	_AVDIPHMDIEALK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.590277	1450.749	1.7257	0.00083625	-2.0153	-0.00097661	-0.28966	-0.00014037	484.589366908266	12.919	0.29263	12.919	12.786	13.079	0	651	73	0.888155670855968	0.0487848675344291	0.888155670855968	538.67304428225	0	29.5883863291111						1527	34	6	NaN	NaN	NaN	0.0038982	1	17010	36.952	22.957	1	1826900			1741	1413	1475	1502	1741	1741		
AVDIPHMDIEALK	13	Unmodified	_AVDIPHMDIEALK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.381777	1450.749	2.9502	0.0021429	-0.16437	-0.0001194	2.7858	0.0020235	726.381277881007	12.919	0.34583	12.919	12.751	13.096	0	420	88	1.04379886199097	0.0582712721750083	1.04379886199097	422.050626398103	0	23.5614617126201						2556	40	6	NaN	NaN	NaN	6.4723E-05	1	17011	72.846	56.194	1	1838500			1742	1413	1475	1502	1742	1742		
AVDLCAAPGSWSQVLSQK	18	Unmodified	_AVDLCAAPGSWSQVLSQK_			0	0	0	Q9UET6	Q9UET6	Q9UET6	FTSJ1	Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.980375	1915.9462	0.74257	0.00071211	2.9294	0.0028092	3.6719	0.0035213	958.983264062471	14.87	0.079793	14.87	14.834	14.914	0	213	46	1.18187287897418	0.0298759142347758	1.18187287897418	476.781952211295	0	12.0523086419556						278	10	4	NaN	NaN	NaN	0.043706	1	29974	36.181	32.677	1	57802			1743	3199	1476	1503	1743	1743		
AVDLVEEESGAPGEEQR	17	Unmodified	_AVDLVEEESGAPGEEQR_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.923777	1813.833	2.7113	0.0024617	-0.089455	-8.1218E-05	2.6219	0.0023805	907.92304381229	7.6334	0.13307	7.6334	7.5801	7.7132	-8.8818E-16	336	43	1.09998710857178	0.0280399540961984	1.09998710857178	443.927818828849	0	11.3162377676848						362	16	4	NaN	NaN	NaN	6.858E-07	1	27566	90.156	82.191	1	76009			1744	248	1477	1504	1744	1744		
AVDNQVYVATASPAR	15	Unmodified	_AVDNQVYVATASPAR_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.402086	1560.78962	2.0678	0.0016158	-3.7765	-0.002951	-1.7086	-0.0013351	781.399204074743	6.6313	0.2128	6.6313	6.5072	6.72	0	432	40	1.035754240522	0.0261576594975734	1.035754240522	418.518844319226	0	10.5695665967083						447	25	4	NaN	NaN	NaN	3.0511E-05	1	20366	55.782	52.277	1	148070			1745	3001	1478	1505	1745	1745		
AVDPDGDGHVSWDEYK	16	Unmodified	_AVDPDGDGHVSWDEYK_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.38683	1788.75911	2.9721	0.0026612	-1.6041	-0.0014363	1.368	0.0012249	895.886705008296	7.8374	0.070984	7.8374	7.8108	7.8818	0	357	76	1.08596037261705	0.0500748206757269	1.08596037261705	438.313590046001	0	20.2111190930422						271	9	2	NaN	NaN	NaN	0.036135	1	26934	38.14	37.088	1	80467			1746	2709	1479	1506	1746	1746		
AVDPSSVALVTLGSSK	16	Unmodified	_AVDPSSVALVTLGSSK_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.92232	1529.83009	1.9596	0.0015009	1.4799	0.0011335	3.4396	0.0026344	765.923005850239	13.026	0.16846	13.026	12.928	13.096	0	297	64	1.12600091227925	0.0419933988669257	1.12600091227925	455.065894512409	0	16.9713571371022						621	20	3	NaN	NaN	NaN	1.8675E-06	1	19441	100.07	86.273	1	149380			1747	2354	1480	1507	1747	1747		
AVDPTSGQLYGLAR	14	Unmodified	_AVDPTSGQLYGLAR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.380623	1446.74669	1.332	0.00096486	-0.77572	-0.00056192	0.55626	0.00040295	724.380171063235	10.241	0.20393	10.241	10.17	10.374	0	465	46	1.01360860968299	0.0302278047766038	1.01360860968299	409.854182967549	0	12.222658836227						510	24	4	NaN	NaN	NaN	2.9006E-06	1	16893	101.45	93.444	1	158770			1748	2354	1481	1508	1748	1748		
AVDQHNAEAQDIFGK	15	Unmodified	_AVDQHNAEAQDIFGK_			0	0	0	P52732	P52732	P52732	KIF11	Kinesin-like protein KIF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.265509	1641.7747	-1.6394	-0.00089882	0.76656	0.00042028	-0.87283	-0.00047854	548.265799767039	6.6136	0.079862	6.6136	6.5781	6.658	0	780	25	0.800512323802183	0.0163545256042036	0.800512323802183	484.983385680801	0	9.90824621044806						144	10	3	NaN	NaN	NaN	8.9579E-05	1	22800	73.891	67.514	1	32010			1749	1219	1482	1509	1749	1749		
AVDQHNAEAQDIFGK	15	Unmodified	_AVDQHNAEAQDIFGK_			0	0	0	P52732	P52732	P52732	KIF11	Kinesin-like protein KIF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.894626	1641.7747	2.0096	0.0016517	-0.72953	-0.0005996	1.28	0.0010521	821.894129662557	6.6047	0.053214	6.6047	6.587	6.6402	0	366	28	1.07994477139643	0.0180517806910934	1.07994477139643	436.1856358634	0	7.29104640140986						125	7	3	NaN	NaN	NaN	0.004897	1	22801	53.051	45.494	1	26691			1750	1219	1482	1509	1750	1750		
AVDQVCTFLFK	11	Unmodified	_AVDQVCTFLFK_			0	0	0	O15541	O15541	O15541	RNF113A	RING finger protein 113A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.339381	1326.66421	0.47354	0.00031459	-4.2119	-0.0027982	-3.7384	-0.0024836	664.336129521595	14.099	0.13302	14.099	14.063	14.196	0	519	34	0.97729762293174	0.0222161383936255	0.97729762293174	395.510390030786	0	8.99082669891487						155	16	3	NaN	NaN	NaN	0.0038597	1	13183	71.066	52.729	1	33314			1751	180	1483	1510	1751	1751		
AVDSLVPIGR	10	Unmodified	_AVDSLVPIGR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.800749	1025.58694	0.22869	0.0001175	-0.55085	-0.00028303	-0.32216	-0.00016552	513.800891076407	10.028	0.17732	10.028	9.9839	10.161	0	690	40	0.86171403876517	0.0264710186728029	0.86171403876517	349.787219149339	0	10.7451237801328						374	21	3	NaN	NaN	NaN	0.0012427	1	4882	67.464	61.233	1	98424			1752	840	1484	1511	1752	1752		
AVDTLAYLSDGDAR	14	Unmodified	_AVDTLAYLSDGDAR_			0	0	0	Q96S55	Q96S55	Q96S55	WRNIP1	ATPase WRNIP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.85972	1465.70489	1.8566	0.0013625	-1.5081	-0.0011067	0.34851	0.00025576	733.858563437646	11.11	0.25716	11.11	10.933	11.19	0	411	52	1.04982941439551	0.0341637123767462	1.04982941439551	424.448114140246	0	13.8124566634373						521	30	3	NaN	NaN	NaN	6.5458E-05	1	17443	73.655	59.2	1	126020			1753	2617	1485	1512	1753	1753		
AVDVFFPPEAQNDFPVAMQISEK	23	Unmodified	_AVDVFFPPEAQNDFPVAMQISEK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.421068	2578.24138	0.85317	0.00073409	-0.93621	-0.00080553	-0.083034	-7.1444E-05	860.754363694066	18.585	0.11527	18.585	18.541	18.656	0	507	52	0.985374541851584	0.0343292904819641	0.985374541851584	595.164320553168	0	20.7348251623979						389	14	3	NaN	NaN	NaN	0.00073159	1	37154	28.626	28.413	1	78729			1754	1503	1486	1513	1754	1754		
AVEDIHGLFSLSK	13	Unmodified	_AVEDIHGLFSLSK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.380091	1414.74563	1.5775	0.0011174	-0.40821	-0.00028917	1.1693	0.00082828	708.379321720974	12.493	0.16845	12.493	12.44	12.609	0	441	40	1.02971785871157	0.0261648835876145	1.02971785871157	416.45717178181	0	10.5820767569599						335	20	3	NaN	NaN	NaN	0.00023023	1	15935	80.623	54.044	1	182450			1755	1728	1487	1514	1755	1755		
AVEDINEHITDAQLEAMTELHDR	23	Unmodified	_AVEDINEHITDAQLEAMTELHDR_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	884.085296	2649.23406	2.2308	0.0019722	-1.6773	-0.0014829	0.55349	0.00048933	884.415953890822	13.3	0.070927	13.3	13.265	13.336	0	324	31	1.1079963157843	0.0200175059687449	1.1079963157843	669.131472310165	0	12.0887976340991						245	9	5	NaN	NaN	NaN	0.035135	1	37434	20.03	19.775	1	71145			1756	2866	1488	1515	1756	1756		
AVEDMLETLQITQS	14	Unmodified	_AVEDMLETLQITQS_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.389996	1576.76544	0.73949	0.00058375	0.5707	0.00045051	1.3102	0.0010343	789.390305489309	17.938	0.12412	17.938	17.885	18.009	0	417	34	1.04580932352505	0.0221120284306979	1.04580932352505	422.544149445555	0	8.93404565783766						261	15	4	NaN	NaN	NaN	0.002916	1	20874	65.879	60.491	1	49683			1757	1788	1489	1516	1757	1757		
AVEEQIEYLQK	11	Unmodified	_AVEEQIEYLQK_			0	0	0	Q5VTR2	Q5VTR2	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.351	1348.68745	1.2593	0.00085044	0.49625	0.00033515	1.7555	0.0011856	675.351090263154	8.414	0.097544	8.414	8.3785	8.4761	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	391.356039958591	0	8.99553274312302						133	12	2	NaN	NaN	NaN	0.0026416	1	13859	53.517	37.637	1	32937			1758	2009	1490	1517	1758	1758		
AVEGCVSASQAATEDGQLLR	20	Unmodified	_AVEGCVSASQAATEDGQLLR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.49712	2060.97968	1.3612	0.0014041	-0.22695	-0.0002341	1.1343	0.00117	1031.99774133284	9.5228	0.088597	9.5228	9.4874	9.576	0	138	43	1.23157729878518	0.0277982078766568	1.23157729878518	496.581861352278	0	11.2084607464461						188	11	3	NaN	NaN	NaN	3.2793E-11	1	32722	129.04	127.95	1	34297			1759	3406	1491	1518	1759	1759		
AVEHLDDLPGALSELSDLHAHK	22	Unmodified	_AVEHLDDLPGALSELSDLHAHK_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	592.553936	2366.18664	0.088461	5.2418E-05	-0.87879	-0.00052073	-0.79033	-0.00046831	592.804393657718	13.744	0.22168	13.744	13.682	13.903	0	684	40	0.86578508874114	0.0264599929662752	0.86578508874114	697.576549890478	0	21.3192290368255						894	26	7	NaN	NaN	NaN	0.00032908	1	36185	107.6	97.276	1	843240		+	1760	25	1492	1519	1760	1760		
AVEHLDDLPGALSELSDLHAHK	22	Unmodified	_AVEHLDDLPGALSELSDLHAHK_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.736156	2366.18664	2.0543	0.0016223	0.93846	0.00074113	2.9927	0.0023635	790.07140827923	13.744	0.27484	13.744	13.655	13.93	0	387	94	1.06589869032374	0.0622985841440777	1.06589869032374	644.109992467352	0	37.6462987787152						1973	32	5	NaN	NaN	NaN	1.2225E-29	1	36186	206.14	191.64	1	1433500		+	1761	25	1492	1519	1761	1761		
AVEIFTTCAHMICNMEELEK	20	Unmodified	_AVEIFTTCAHMICNMEELEK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.366813	2425.07861	1.4671	0.0011874	2.0805	0.0016839	3.5476	0.0028713	809.370326196199	15.624	0.070922	15.624	15.597	15.668	0	408	40	1.0518390438467	0.0261360051694259	1.0518390438467	635.523827399462	0	15.7914408438962						224	9	4	NaN	NaN	NaN	0.052954	1	36466	10.645	9.2196	1	39500			1762	2594	1493	1520	1762	1762		
AVEILADIIQNSTLGEAEIER	21	Unmodified	_AVEILADIIQNSTLGEAEIER_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1142.60518	2283.19581	-0.025718	-2.9386E-05	-1.0811	-0.0012353	-1.1068	-0.0012647	1143.10549502054	19.649	0.079787	19.649	19.632	19.712	0	78	37	1.27121832677567	0.0237520526896609	1.27121832677567	512.231464913341	0	9.57077827440008						119	10	2	NaN	NaN	NaN	0.03866	1	35506	40.372	38.27	1	27350			1763	335	1494	1521	1763	1763		
AVELAANTK	9	Unmodified	_AVELAANTK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.758549	915.502546	-0.061897	-2.8396E-05	0.91655	0.00042048	0.85466	0.00039208	458.758925002028	3.4124	0.20404	3.4124	3.3415	3.5455	0	753	43	0.81889964927511	0.0285806380781382	0.81889964927511	332.936754030678	0	11.6199156737753						399	24	3	NaN	NaN	NaN	0.0081255	1	2617	72.038	38.643	1	148240			1764	888	1495	1522	1764	1764		
AVELLGDIVQNCSLEDSQIEK	21	Unmodified	_AVELLGDIVQNCSLEDSQIEK_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1180.58613	2359.15771	0.36977	0.00043654	-1.4129	-0.0016681	-1.0432	-0.0012315	1181.085677363	15.961	0.13301	15.961	15.916	16.049	0	63	46	1.28111162701928	0.0296799076845398	1.28111162701928	516.117356319806	0	11.9570497737196						323	16	4	NaN	NaN	NaN	2.4919E-16	1	36120	100.98	92.569	1	53250			1765	927	1496	1523	1765	1765		
AVENSSTAIGIR	12	Unmodified	_AVENSSTAIGIR_			0	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.327859	1216.64116	2.0327	0.0012386	2.0977	0.0012782	4.1303	0.0025167	609.328459738265	5.6825	0.15968	5.6825	5.6292	5.7889	0	591	58	0.928742107665821	0.038485045404303	0.928742107665821	376.210216773669	0	15.5893300783849						659	19	4	NaN	NaN	NaN	0.0057082	1	9931	68.49	53.728	1	265450			1766	843	1497	1524	1766	1766		
AVENYLIQMAR	11	Unmodified	_AVENYLIQMAR_			0	0	0	O14737	O14737	O14737	PDCD5	Programmed cell death protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.342455	1306.67036	1.4947	0.00097807	-1.9885	-0.0013012	-0.49376	-0.00032309	654.341608006562	12.733	0.30152	12.733	12.662	12.963	0	537	49	0.965173861991602	0.0323434604594182	0.965173861991602	390.66552474434	0	13.0913977781718						690	27	4	NaN	NaN	NaN	0.00040176	1	12564	102.55	95.395	1	249000			1767	114	1498	1525	1767	1767		
AVEQGGAFSNPETLDLYR	18	Unmodified	_AVEQGGAFSNPETLDLYR_			0	0	0	Q86V21	Q86V21	Q86V21	AACS	Acetoacetyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.978886	1965.94322	2.2038	0.0021685	0.98656	0.00097075	3.1904	0.0031392	983.980403703525	12.786	0.13302	12.786	12.715	12.848	0	228	52	1.17191150690002	0.0338686755985531	1.17191150690002	472.676960665157	0	13.6605388285893						465	16	4	NaN	NaN	NaN	1.0935E-06	1	31033	97.949	92.251	1	105690			1768	2170	1499	1526	1768	1768		
AVETDVMNQETDPLCAECR	19	Unmodified	_AVETDVMNQETDPLCAECR_			0	0	0	Q8IZ73	Q8IZ73	Q8IZ73	RPUSD2	RNA pseudouridylate synthase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.47721	2236.93987	1.9781	0.0022144	-0.99502	-0.0011139	0.98304	0.0011005	1119.9769024007	10.853	0.017758	10.853	10.853	10.871	0	162	7	1.21569043230068	0.00397444143990811	1.21569043230068	489.918034837587	0	1.60168286932384						13	3	2	NaN	NaN	NaN	0.00053009	1	35059	30.027	29.592	1	1756.4			1769	2231	1500	1527	1769	1769		
AVETPPLSSVNLLEGLSR	18	Unmodified	_AVETPPLSSVNLLEGLSR_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.517647	1881.02074	1.4005	0.0013185	0.77535	0.00073001	2.1758	0.0020486	941.518762374351	17.539	0.22167	17.539	17.459	17.681	0	222	49	1.17589687683038	0.0318785889633038	1.17589687683038	474.434491760207	0	12.8619290099698						730	26	3	NaN	NaN	NaN	0.0029005	1	29176	48.363	43.547	1	173720			1770	1784	1501	1528	1770	1770		
AVETVHNLCCNENK	14	Unmodified	_AVETVHNLCCNENK_			0	0	0	Q8IXH7	Q8IXH7	Q8IXH7	NELFCD	Negative elongation factor C/D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.379971	1686.74539	3.092	0.0026108	-1.2817	-0.0010822	1.8103	0.0015286	844.378984845401	3.6608	0.053179	3.6608	3.6431	3.6962	4.4409E-16	348	22	1.09197348738011	0.0140286686675297	1.09197348738011	440.945580161291	0	5.66486230296272						75	7	3	NaN	NaN	NaN	1.6086E-05	1	24094	74.524	61.349	1	11454			1771	2211	1502	1529	1771	1771		
AVEVAWETLQEEFSR	15	Unmodified	_AVEVAWETLQEEFSR_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.438866	1792.86318	0.62059	0.00055694	2.6127	0.0023447	3.2333	0.0029017	897.942563638319	17.255	0.12415	17.255	17.193	17.317	0	213	55	1.18187287897418	0.0358634154604045	1.18187287897418	477.017227103671	0	14.4748790684136						352	15	4	NaN	NaN	NaN	7.7991E-05	1	27046	66.619	61.232	1	79733			1772	255	1503	1530	1772	1772		
AVEVQGPSLESGDHGK	16	Unmodified	_AVEVQGPSLESGDHGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.394458	1608.77436	3.2171	0.002591	-2.5823	-0.0020797	0.6348	0.00051126	805.392609363986	5.1593	0.20395	5.1593	5.0706	5.2745	0	423	37	1.04178812298108	0.0241272072846639	1.04178812298108	420.846533140991	0	9.74656104839215						473	24	4	NaN	NaN	NaN	3.9086E-07	1	21869	92.747	69.849	1	124150			1773	1584	1504	1531	1773	1773		
AVEVQGPSLESGDHGK	16	Unmodified	_AVEVQGPSLESGDHGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.265398	1608.77436	0.46032	0.00024732	1.3906	0.00074713	1.8509	0.00099445	537.266086079339	5.1504	0.25717	5.1504	5.0795	5.3366	0	750	37	0.820941264895493	0.024501095294577	0.820941264895493	497.445335358191	0	14.8463185938221						396	30	4	NaN	NaN	NaN	0.001227	1	21870	59.67	52.924	1	136980			1774	1584	1504	1531	1774	1774		
AVEYYFASDASAVIEHTNR	19	Unmodified	_AVEYYFASDASAVIEHTNR_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.00818	2142.0018	0.32643	0.00034994	1.0459	0.0011212	1.3724	0.0014712	1072.50979505169	13.176	0.079829	13.176	13.15	13.23	0	63	25	1.28111162701928	0.0158260309307916	1.28111162701928	516.423720555799	0	6.37956724655317						110	10	3	NaN	NaN	NaN	2.9746E-05	1	33907	59.997	57.756	1	17941			1775	1558	1505	1532	1775	1775		
AVEYYFASDASAVIEHTNR	19	Unmodified	_AVEYYFASDASAVIEHTNR_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.007876	2142.0018	1.2542	0.00089675	1.3451	0.00096173	2.5993	0.0018585	715.342766852486	13.176	0.18622	13.176	13.079	13.265	0	477	46	1.0055473068722	0.0302486975418772	1.0055473068722	608.011312525879	0	18.2900895551527						407	22	5	NaN	NaN	NaN	2.4462E-07	1	33909	93.649	90.934	1	101070			1776	1558	1505	1532	1776	1776		
AVFADLDLR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AVFADLDLR_			1	0	0	P78346	P78346	P78346	RPP30	Ribonuclease P protein subunit p30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.284931	1060.55531	-0.66388	-0.00035271	0.0062819	3.3375E-06	-0.6576	-0.00034937	531.28530913276	18.958	0.062048	18.958	18.931	18.993	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	360.362950705903	0	6.59620477283687						99	8	2	NaN	NaN	NaN	0.00072612	1	5746	87.251	62.4	1	25859			1777	1458	1506	1533	1777	1777		
AVFDETYPDPVR	12	Unmodified	_AVFDETYPDPVR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.840799	1407.66705	1.8156	0.0012797	-0.0016704	-1.1773E-06	1.814	0.0012785	704.840704715061	10.534	0.28378	10.534	10.418	10.702	0	492	46	0.995464410099171	0.030261243599951	0.995464410099171	402.623368038267	0	12.2393967033185						773	33	4	NaN	NaN	NaN	1.7341E-05	1	15689	118.91	98.675	1	393750			1778	1136	1507	1534	1778	1778		
AVFDGNYYYYLPWAHTK	17	Unmodified	_AVFDGNYYYYLPWAHTK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.335264	2106.98396	0.058108	4.0869E-05	0.67175	0.00047246	0.72985	0.00051333	703.669577072919	16.404	0.16846	16.404	16.342	16.51	0	531	22	0.969216233931596	0.0141473237574097	0.969216233931596	586.106161539038	0	8.55519473695767						235	20	4	NaN	NaN	NaN	0.037529	1	33414	12.376	10.534	1	41655			1779	3136	1508	1535	1779	1779		
AVFDNLIQLEHLNIVK	16	Unmodified	_AVFDNLIQLEHLNIVK_			0	0	0	Q9UHY1	Q9UHY1	Q9UHY1	NRBP1	Nuclear receptor-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.687638	1865.04108	-0.28236	-0.00017582	-0.88268	-0.00054964	-1.165	-0.00072546	623.021412886657	17.592	0.11526	17.592	17.557	17.672	0	642	28	0.894250814548268	0.0182828962008553	0.894250814548268	541.231590678816	0	11.0654425268857						240	14	4	NaN	NaN	NaN	0.00087341	1	28817	47.57	45.587	1	65779			1780	3226	1509	1536	1780	1780		
AVFDNLIQLEHLNIVK	16	Unmodified	_AVFDNLIQLEHLNIVK_			0	0	0	Q9UHY1	Q9UHY1	Q9UHY1	NRBP1	Nuclear receptor-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.527818	1865.04108	0.59758	0.00055786	0.15803	0.00014753	0.75561	0.00070538	933.528150307274	17.601	0.070923	17.601	17.566	17.637	0	159	28	1.21767724410157	0.017881307890701	1.21767724410157	491.322272246146	0	7.21495360626068						115	9	3	NaN	NaN	NaN	0.0046608	1	28818	32.759	31.664	1	22436			1781	3226	1509	1536	1781	1781		
AVFPIYLDDVYENAVDAAR	19	Unmodified	_AVFPIYLDDVYENAVDAAR_			0	0	0	Q2M389	Q2M389	Q2M389	KIAA1033	WASH complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.03112	2140.04769	0.16304	0.00017462	0.84232	0.00090215	1.0054	0.0010768	1071.53337030279	19.295	0.15964	19.295	19.25	19.41	0	120	43	1.2434810169581	0.0277715403229193	1.2434810169581	501.257547156906	0	11.1949390406373						232	19	3	NaN	NaN	NaN	0.033218	1	33882	29.98	28.885	1	41727			1782	1922	1510	1537	1782	1782		
AVFPLLYVR	9	Unmodified	_AVFPLLYVR_			0	0	0	Q8N6R0	Q8N6R0	Q8N6R0	METTL13	Methyltransferase-like protein 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.326402	1076.63825	0.054936	2.9629E-05	-2.563	-0.0013823	-2.508	-0.0013526	539.325453961275	16.129	0.17735	16.129	16.032	16.209	0	648	43	0.890187667287968	0.0284341478220305	0.890187667287968	361.118258041808	0	11.5347474557556						323	21	3	NaN	NaN	NaN	0.053544	1	6135	46.835	36.756	1	76185			1783	2265	1511	1538	1783	1783		
AVFPSIVGR	9	Unmodified	_AVFPSIVGR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;P63261;P68133;P68032;P62736;P63267	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.279452	944.544351	-0.3611	-0.0001709	-1.7025	-0.00080578	-2.0636	-0.00097668	473.278550129234	10.871	0.15963	10.871	10.817	10.977	0	753	61	0.81889964927511	0.0408067911754932	0.81889964927511	332.785411711389	0	16.5831122457777						609	19	3	NaN	NaN	NaN	0.022642	1	3158	31.952	24.602	1	190380			1784	1310;1436;1444	1512	1539	1784	1784		
AVFQANQENLPILK	14	Unmodified	_AVFQANQENLPILK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.940847	1583.86714	1.7024	0.0013499	-0.91086	-0.00072226	0.79154	0.00062764	792.940535127428	13.088	0.23941	13.088	12.955	13.194	0	372	67	1.07593298845566	0.0441296375038467	1.07593298845566	434.698216734422	0	17.829246741094						793	28	3	NaN	NaN	NaN	0.023167	1	21092	39.702	34.315	1	350840			1785	522	1513	1540	1785	1785		
AVFVDLEPTVIDEIR	15	Unmodified	_AVFVDLEPTVIDEIR_			0	0	0	P68366	P68366	P68366	TUBA4A	Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.645327	1714.91415	-0.69963	-0.00040064	0.071492	4.0939E-05	-0.62814	-0.0003597	572.980007299724	17.646	0.079801	17.646	17.61	17.69	0	660	19	0.882057989648486	0.0121979015150934	0.882057989648486	534.196585051493	0	7.38735707927094						84	10	2	NaN	NaN	NaN	0.04126	1	24917	22.395	12.652	1	25603			1786	1448	1514	1541	1786	1786		
AVFVDLEPTVIDEIR	15	Unmodified	_AVFVDLEPTVIDEIR_			0	0	0	P68366	P68366	P68366	TUBA4A	Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.464352	1714.91415	2.2564	0.001937	-0.38175	-0.00032772	1.8746	0.0016093	858.464687934076	17.654	0.22168	17.654	17.61	17.832	0	315	100	1.11400032671325	0.0660623955247506	1.11400032671325	449.779931516519	0	26.6728285642488						1232	26	5	NaN	NaN	NaN	0.0001046	1	24918	77.157	40.643	1	820070			1787	1448	1514	1541	1787	1787		
AVFVDLEPTVIDEVR	15	Unmodified	_AVFVDLEPTVIDEVR_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.456527	1700.8985	0.538	0.00045809	-6.4483	-0.0054904	-5.9103	-0.0050323	851.952711652239	16.954	0.12406	16.954	16.927	17.051	0	345	28	1.09397730668811	0.0180318910804229	1.09397730668811	441.724797477467	0	7.28089457335187						99	15	2	NaN	NaN	NaN	0.063906	1	24525	12.018	8.5136	1	18831			1788	1447;2696	1515	1542	1788	1788		
AVFVDLEPTVIDEVR	15	Unmodified	_AVFVDLEPTVIDEVR_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.973444	1700.8985	-0.29615	-0.00016821	-2.0029	-0.0011376	-2.299	-0.0013058	567.97227443663	16.519	0.18619	16.519	16.484	16.67	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	530.537152414047	0	12.318203145254						505	22	5	NaN	NaN	NaN	2.6943E-05	1	24527	127.03	82.431	1	245690			1789	1447;2696	1515	1542	1789	1789		
AVFVDLEPTVIDEVR	15	Unmodified	_AVFVDLEPTVIDEVR_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.456527	1700.8985	0.54778	0.00046641	-0.91233	-0.00077681	-0.36455	-0.0003104	851.455718546179	16.936	0.18627	16.936	16.83	17.016	0	315	25	1.11400032671325	0.0160095946689738	1.11400032671325	449.809647471609	0	6.46433395173335						309	22	3	NaN	NaN	NaN	0.0020689	1	24528	72.846	51.485	1	73043			1790	1447;2696	1515	1542	1790	1790		
AVFVDLEPTVIDEVR	15	Unmodified	_AVFVDLEPTVIDEVR_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.456527	1700.8985	1.2599	0.0010728	-1.0564	-0.0008995	0.20349	0.00017327	851.456541702106	15.704	0.11528	15.704	15.668	15.783	0	318	52	1.11199926528787	0.0340133727588399	1.11199926528787	449.001661935623	0	13.7338767870511						234	14	2	NaN	NaN	NaN	0.0044332	1	24529	42.446	25.687	1	98539			1791	1447;2696	1515	1542	1791	1791		
AVFVDLEPTVIDEVR	15	Unmodified	_AVFVDLEPTVIDEVR_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.456527	1700.8985	2.1431	0.0018248	1.8214	0.0015508	3.9645	0.0033756	851.458296793299	16.528	0.41674	16.528	16.413	16.83	0	312	148	1.11600111266355	0.0980928004335946	1.11600111266355	450.617512331911	0	39.6077864148						3340	48	5	NaN	NaN	NaN	5.6567E-33	1	24532	197.3	156.77	1	8205100			1792	1447;2696	1515	1542	1792	1792		
AVFYTWADPVGSR	13	Unmodified	_AVFYTWADPVGSR_			0	0	0	Q96RL7	Q96RL7	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.864608	1467.71466	1.0671	0.00078414	1.4146	0.0010395	2.4816	0.0018237	735.367094075226	13.637	0.15074	13.637	13.549	13.7	0	444	43	1.02770517576159	0.0281834048046041	1.02770517576159	415.497908512973	0	11.3944602277687						290	18	3	NaN	NaN	NaN	0.0054848	1	17516	37.749	25.731	1	64083			1793	2610	1516	1543	1793	1793		
AVGDGILCNTYIDSYK	16	Unmodified	_AVGDGILCNTYIDSYK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.927277	1787.84	1.9782	0.0017704	0.89149	0.00079782	2.8697	0.0025682	894.928080184455	13.425	0.17738	13.425	13.38	13.558	0	204	70	1.18784641916898	0.0458160445330418	1.18784641916898	479.438560083801	0	18.4922714461892						757	21	5	NaN	NaN	NaN	2.156E-17	1	26915	180.17	126.65	1	398650			1794	1946	1517	1544	1794	1794		
AVGDTVAEDEVVCEIETDK	19	Unmodified	_AVGDTVAEDEVVCEIETDK_			0	0	0	P36957	P36957	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.97535	2077.93615	1.7232	0.0017921	2.0394	0.002121	3.7626	0.003913	1040.47931030422	13.478	0.088658	13.478	13.442	13.531	0	207	37	1.18585551256002	0.023895805459075	1.18585551256002	478.120350905218	0	9.63445442572623						252	11	4	NaN	NaN	NaN	0.02438	1	32983	29.115	26.725	1	47542			1795	996	1518	1545	1795	1795		
AVGFSSGTENPHGVK	15	Unmodified	_AVGFSSGTENPHGVK_			0	0	0	Q32P28	Q32P28	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.867879	1485.72121	2.8259	0.0021021	-1.3066	-0.00097197	1.5193	0.0011301	743.866341734027	4.0686	0.070977	4.0686	4.0332	4.1041	0	423	28	1.04178812298108	0.0181016489291916	1.04178812298108	421.143932753823	0	7.31761041540238						164	9	3	NaN	NaN	NaN	4.2595E-06	1	18092	86.243	70.363	1	40633			1796	1928	1519	1546	1796	1796		
AVGIWHCGSCMK	12	Unmodified	_AVGIWHCGSCMK_			0	0	0	P61513	P61513	P61513	RPL37A	60S ribosomal protein L37a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.210637	1404.61008	-1.2872	-0.00060396	1.0916	0.00051219	-0.19558	-9.1766E-05	469.210971083239	6.1259	0.088661	6.1259	6.0904	6.1791	0	789	28	0.794378096728713	0.0184103687161689	0.794378096728713	481.945485003271	0	11.1694848039511						135	11	2	NaN	NaN	NaN	0.051349	1	15593	17.731	13.528	1	38209			1797	1346	1520	1547	1797	1797		
AVGIWHCGSCMK	12	Unmodified	_AVGIWHCGSCMK_			0	0	0	P61513	P61513	P61513	RPL37A	60S ribosomal protein L37a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.312317	1404.61008	2.5729	0.0018096	-0.33525	-0.00023579	2.2377	0.0015738	703.31193078845	6.1259	0.28377	6.1259	6.055	6.3387	0	474	58	1.00756305028564	0.0383203192355812	1.00756305028564	407.525387271598	0	15.4992810945423						894	33	5	NaN	NaN	NaN	5.0906E-05	1	15595	97.277	91.014	1	467740			1798	1346	1520	1547	1798	1798		
AVGNIVTGTDEQTQVVLNCDALSHFPALLTHPK	33	Unmodified	_AVGNIVTGTDEQTQVVLNCDALSHFPALLTHPK_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	887.206881	3544.79842	1.2867	0.0011416	-0.1808	-0.00016041	1.1059	0.00098115	887.708126445997	17.087	0.1064	17.087	17.034	17.14	0	357	40	1.08596037261705	0.0260640179471912	1.08596037261705	873.276381570937	0	20.9594123837791						506	13	6	NaN	NaN	NaN	1.1302E-10	1	38667	99.41	98.659	1	128980			1799	96	1521	1548	1799	1799		
AVGSISSTAFDIR	13	Unmodified	_AVGSISSTAFDIR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.348791	1322.68303	1.0236	0.00067797	2.1762	0.0014414	3.1998	0.0021194	662.350801234429	11.208	0.20399	11.208	11.163	11.367	0	498	43	0.991429299781895	0.0282496839404589	0.991429299781895	401.241873880717	0	11.432944460388						425	24	4	NaN	NaN	NaN	0.0011881	1	13074	75.474	59.595	1	101750			1800	307	1522	1549	1800	1800		
AVGSVTVYYEVAGHLR	16	Unmodified	_AVGSVTVYYEVAGHLR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.954486	1719.89442	1.7607	0.0015159	-0.050903	-4.3825E-05	1.7098	0.001472	861.45572230756	12.44	0.070913	12.44	12.414	12.485	0	183	22	1.20177511391933	0.0139229596600763	1.20177511391933	485.207916517257	0	5.6212931772132						127	9	3	NaN	NaN	NaN	0.02675	1	25065	34.779	32.796	1	25347			1801	2354	1523	1550	1801	1801		
AVGTQTLSGAGLLK	14	Unmodified	_AVGTQTLSGAGLLK_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.382634	1314.75072	0.84566	0.00055677	1.1011	0.00072495	1.9468	0.0012817	658.383527652145	10.241	0.11528	10.241	10.197	10.312	0	492	34	0.995464410099171	0.0221885084340552	0.995464410099171	402.900059182564	0	8.98048314993304						256	14	3	NaN	NaN	NaN	6.5458E-05	1	12808	81.799	50.881	1	99123			1802	1689	1524	1551	1802	1802		
AVGWTCDFVGSYHK	14	Unmodified	_AVGWTCDFVGSYHK_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.917164	1625.72966	-0.044133	-2.396E-05	0.42981	0.00023335	0.38568	0.00020939	542.917185645681	10.392	0.088679	10.392	10.356	10.445	0	708	28	0.849494101904619	0.0183388204791043	0.849494101904619	514.701018585639	0	11.1113303307125						180	11	4	NaN	NaN	NaN	0.024289	1	22348	61.577	59.441	1	40856			1803	2200	1525	1552	1803	1803		
AVHSNPGDPALWSLLSR	17	Unmodified	_AVHSNPGDPALWSLLSR_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.319837	1818.93768	-0.92791	-0.00056354	-0.96705	-0.00058731	-1.895	-0.0011508	607.319140646969	14.462	0.11528	14.462	14.418	14.533	0	729	28	0.835224628594324	0.0183566683857203	0.835224628594324	505.601381843997	0	11.1121686120443						249	14	4	NaN	NaN	NaN	0.00010561	1	27702	88.42	86.71	1	58739			1804	2072	1526	1553	1804	1804		
AVIEHNLLSASK	12	Unmodified	_AVIEHNLLSASK_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.361702	1280.70885	1.5823	0.0010148	0.096956	6.2184E-05	1.6792	0.001077	641.361801664571	6.2234	0.079817	6.2234	6.1879	6.2678	-8.8818E-16	516	28	0.979317271586824	0.0181768396345002	0.979317271586824	396.474285665818	0	7.35885061852673						162	10	3	NaN	NaN	NaN	0.002677	1	11790	86.838	55.92	1	49987			1805	2731	1527	1554	1805	1805		
AVIGSTYMLTQDEVLWEK	18	Unmodified	_AVIGSTYMLTQDEVLWEK_			0	0	0	Q14764	Q14764	Q14764	MVP	Major vault protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.02445	2082.03434	0.53191	0.00055427	1.8913	0.0019707	2.4232	0.002525	1042.52904514631	16.44	0.13299	16.44	16.369	16.502	0	156	64	1.21966378336455	0.0417001832682602	1.21966378336455	491.744947678102	0	16.8127107807127						353	16	3	NaN	NaN	NaN	0.045488	1	33066	29.98	29.361	1	60067			1806	1774	1528	1555	1806	1806		
AVIPEAVVEVLDPK	14	Unmodified	_AVIPEAVVEVLDPK_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.926874	1477.8392	0.90981	0.00067319	-0.69738	-0.00051601	0.21242	0.00015718	739.92674238243	17.849	0.26598	17.849	17.708	17.974	0	426	31	1.03977710643793	0.0201115556839417	1.03977710643793	420.35166234181	0	8.13051740770317						430	31	3	NaN	NaN	NaN	0.00030517	1	17837	43.613	37.747	1	96898			1807	273	1529	1556	1807	1807		
AVIPEAVVEVLDPK	14	Unmodified	_AVIPEAVVEVLDPK_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.926874	1477.8392	1.2715	0.0009408	1.3096	0.00096901	2.5811	0.0019098	739.927617218203	17.823	0.20391	17.823	17.716	17.92	0	315	43	1.11400032671325	0.0280245115446394	1.11400032671325	450.357944557398	0	11.3294952558103						337	24	3	NaN	NaN	NaN	0.0043894	1	17838	41.317	34.94	1	73926			1808	273	1529	1556	1808	1808		
AVIQHFQEK	9	Unmodified	_AVIQHFQEK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	367.201341	1098.58219	-0.41038	-0.00015069	1.368	0.00050233	0.95762	0.00035164	367.201912855742	3.3769	0.070915	3.3769	3.3592	3.4301	0	879	16	0.732894652678068	0.0102679640152061	0.732894652678068	445.847271648089	0	6.24638715104845						64	9	2	NaN	NaN	NaN	0.057381	1	6674	25.254	15.175	1	13061			1809	523	1530	1557	1809	1809		
AVITNILLR	9	Unmodified	_AVITNILLR_			0	0	0	Q8N556	Q8N556	Q8N556	AFAP1	Actin filament-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.829309	1011.64407	-0.52581	-0.0002665	-1.1111	-0.00056312	-1.6369	-0.00082962	506.829082568931	13.203	0.10641	13.203	13.167	13.274	0	669	28	0.875957769340875	0.0183032026669903	0.875957769340875	355.633930859563	0	7.43099740604958						164	13	3	NaN	NaN	NaN	0.0087121	1	4557	58.286	27.724	1	45636			1810	2255	1531	1558	1810	1810		
AVIVIQDIFGWQLPNTR	17	Unmodified	_AVIVIQDIFGWQLPNTR_			0	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.546542	1969.07853	0.74165	0.00073093	-1.171	-0.0011541	-0.42935	-0.00042314	986.04636054191	19.969	0.026613	19.969	19.969	19.995	0	183	49	1.20177511391933	0.0318304689315978	1.20177511391933	484.716698046017	0	12.8383086145485						62	4	2	NaN	NaN	NaN	0.034186	1	31100	34.338	30.031	1	16919			1811	2504	1532	1559	1811	1811		
AVLALHQDLFSLAQQCIDK	19	Unmodified	_AVLALHQDLFSLAQQCIDK_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.049018	2169.12522	0.47814	0.0003462	-0.77989	-0.00056468	-0.30174	-0.00021848	724.382309728253	16.032	0.070949	16.032	16.005	16.076	0	501	25	0.98941132619024	0.0161426739918176	0.98941132619024	598.20643202886	0	9.75999683491955						182	9	4	NaN	NaN	NaN	0.02447	1	34298	43.518	42.919	1	40410			1812	1049	1533	1560	1812	1812		
AVLEEGTDVVIK	12	Unmodified	_AVLEEGTDVVIK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.855918	1271.69728	0.75835	0.00048296	-0.56656	-0.00036082	0.19178	0.00012214	636.855707987624	9.3987	0.08868	9.3987	9.3544	9.443	0	528	31	0.971237000454584	0.020206269780618	0.971237000454584	393.232736696557	0	8.18107913984164						196	11	3	NaN	NaN	NaN	0.022592	1	11549	26.579	0	1	54651			1813	3037	1534	1561	1813	1813		
AVLENNLGAAVLR	13	Unmodified	_AVLENNLGAAVLR_			0	0	0	Q9NZL9	Q9NZL9	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.388251	1338.76195	0.58068	0.00038928	-0.40285	-0.00027007	0.17783	0.00011921	670.389186954447	11.722	0.14186	11.722	11.687	11.828	1.7764E-15	498	34	0.991429299781895	0.0221915758833877	0.991429299781895	401.192057604004	0	8.98004930063121						250	17	3	NaN	NaN	NaN	0.0048035	1	13567	50.297	25.043	1	97160			1814	3135	1535	1562	1814	1814		
AVLFCLSEDK	10	Unmodified	_AVLFCLSEDK_			0	0	0	P23528	P23528	P23528	CFL1	Cofilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.297181	1180.57981	0.92149	0.00054487	-0.88918	-0.00052577	0.032303	1.9101E-05	591.297023468811	11.607	0.28381	11.607	11.536	11.82	0	603	100	0.920633820089869	0.0669537509795792	0.920633820089869	373.053508261709	0	27.1305823761446						1253	33	5	NaN	NaN	NaN	3.062E-05	1	8894	99.305	78.03	1	1694300			1815	823	1536	1563	1815	1815		
AVLGANDPEK	10	Unmodified	_AVLGANDPEK_			0	0	0	Q15738	Q15738	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.266739	1012.51892	1.4701	0.00074572	-0.34001	-0.00017247	1.1301	0.00057325	507.266368612859	3.7317	0.15959	3.7317	3.6874	3.847	0	675	58	0.871889544407995	0.0386723063597282	0.871889544407995	353.978146228933	0	15.7005568003557						287	19	2	NaN	NaN	NaN	0.060687	1	4566	22.898	14.424	1	70275			1816	1865	1537	1564	1816	1816		
AVLGSSPFLSEANAER	16	Unmodified	_AVLGSSPFLSEANAER_			0	0	0	Q8NI60	Q8NI60	Q8NI60	ADCK3	Atypical kinase ADCK3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.420476	1646.8264	1.3497	0.0011127	-2.6974	-0.0022238	-1.3477	-0.0011111	824.918762881164	11.855	0.15077	11.855	11.784	11.935	0	372	31	1.07593298845566	0.0200616822933108	1.07593298845566	434.554143921511	0	8.10263024568866						204	18	3	NaN	NaN	NaN	0.00014916	1	22946	65.408	60.88	1	61713			1817	2330	1538	1565	1817	1817		
AVLGTSNFK	9	Unmodified	_AVLGTSNFK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.761092	935.507631	-0.039533	-1.8532E-05	-1.2793	-0.00059968	-1.3188	-0.00061821	468.760420141365	6.0461	0.22167	6.0461	6.0017	6.2234	0	744	37	0.82502364452135	0.0244942818992349	0.82502364452135	335.320529260171	0	9.9553941572965						341	26	3	NaN	NaN	NaN	0.022642	1	2980	31.952	21.873	1	97522			1818	495	1539	1566	1818	1818		
AVLIAGQPGTGK	12	Unmodified	_AVLIAGQPGTGK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.327131	1110.63971	1.5969	0.00088841	-0.90898	-0.00050569	0.68795	0.00038272	556.326677381711	5.7357	0.23943	5.7357	5.6647	5.9041	0	615	34	0.912521036363781	0.0223117043347298	0.912521036363781	370.034920599536	0	9.04758291911946						380	28	3	NaN	NaN	NaN	0.0022455	1	7014	57.888	44.24	1	177480			1819	3325	1540	1567	1819	1819		
AVLLAGPPGTGK	12	Unmodified	_AVLLAGPPGTGK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.824224	1079.63389	2.0042	0.0010839	-1.9981	-0.0010806	0.0061127	3.3059E-06	540.823708389187	7.6865	0.1508	7.6865	7.6068	7.7576	0	621	43	0.908462957275599	0.028418378530508	0.908462957275599	368.518988288831	0	11.5279462095831						292	18	3	NaN	NaN	NaN	0.0041715	1	6208	81.099	62.696	1	109930			1820	3331	1541	1568	1820	1820		
AVLLASDAQECTLEEVVER	19	Unmodified	_AVLLASDAQECTLEEVVER_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.53063	2131.0467	0.84491	0.00090112	0.26519	0.00028283	1.1101	0.001184	1067.53253487091	15.038	0.16848	15.038	14.959	15.127	-1.7764E-15	120	73	1.2434810169581	0.0475953264979982	1.2434810169581	501.271201223649	0	19.1865948582367						868	20	6	NaN	NaN	NaN	2.2954E-14	1	33759	91.457	90.514	1	166490			1821	1920	1542	1569	1821	1821		
AVLLGPPGAGK	11	Unmodified	_AVLLGPPGAGK_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.300384	978.586216	0.29176	0.00014305	-1.1986	-0.00058767	-0.90683	-0.00044462	490.299974281235	7.2698	0.29261	7.2698	7.1368	7.4294	0	717	52	0.84338031290707	0.0346640784311575	0.84338031290707	342.562845998539	0	14.079799088934						714	34	3	NaN	NaN	NaN	0.068683	1	3817	19.256	16.888	1	226510			1822	1257	1543	1570	1822	1822		
AVLNPLCQVDYR	12	Unmodified	_AVLNPLCQVDYR_			0	0	0	Q15437;Q15436	Q15437;Q15436	Q15437	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.371743	1446.72893	0.95484	0.00069166	-1.3629	-0.00098727	-0.4081	-0.00029561	724.872600091851	12.006	0.23055	12.006	11.908	12.139	0	462	73	1.01562323939346	0.0483211026601307	1.01562323939346	410.668851587584	0	19.5387137347631						863	27	5	NaN	NaN	NaN	0.0025573	1	16889	68.49	63.662	1	517340			1823	1851;1850	1544	1571	1823	1823		
AVLNPTNADILIETK	15	Unmodified	_AVLNPTNADILIETK_			0	0	0	Q14643	Q14643	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.451245	1610.88794	1.8589	0.0014991	1.6899	0.0013628	3.5487	0.0028619	806.954127987697	13.363	0.079851	13.363	13.327	13.407	0	324	28	1.1079963157843	0.0180145146238793	1.1079963157843	447.587334097477	0	7.2771619008991						171	10	3	NaN	NaN	NaN	0.047779	1	21930	27.357	22.206	1	29625			1824	1759	1545	1572	1824	1824		
AVLQEEQANLWFSK	14	Unmodified	_AVLQEEQANLWFSK_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.927937	1661.84132	2.2627	0.0018824	1.6319	0.0013576	3.8946	0.00324	831.929555057576	13.673	0.15072	13.673	13.62	13.77	0	357	34	1.08596037261705	0.0220511287712513	1.08596037261705	438.570984420013	0	8.90546791267724						224	18	2	NaN	NaN	NaN	5.82E-05	1	23396	108.5	94.04	1	95628			1825	2220	1546	1573	1825	1825		
AVLSAEQLRDEEVHAGLGELLR	22	Unmodified	_AVLSAEQLRDEEVHAGLGELLR_			0	0	1	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	602.075036	2404.27104	-0.019849	-1.1951E-05	-0.85265	-0.00051336	-0.8725	-0.00052531	602.325151814554	14.302	0.20392	14.302	14.258	14.462	0	675	28	0.871889544407995	0.0183108263146563	0.871889544407995	702.430119778595	0	14.7519556851462						596	24	6	NaN	NaN	NaN	4.4471E-06	1	36366	66.913	58.501	1	290450			1826	1164	1547	1574	1826	1826		
AVLSAEQLRDEEVHAGLGELLR	22	Unmodified	_AVLSAEQLRDEEVHAGLGELLR_			0	0	1	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	602.075036	2404.27104	0.79506	0.00047868	-0.96689	-0.00058214	-0.17183	-0.00010346	602.324773193083	14.294	0.08867	14.294	14.258	14.347	0	594	49	0.926715457081489	0.0324286658287691	0.926715457081489	746.600133148693	0	26.12586856147						482	11	5	NaN	NaN	NaN	0.048739	1	36367	11.766	7.916	1	237800			1827	1164	1547	1574	1827	1827		
AVLSAEQLRDEEVHAGLGELLR	22	Unmodified	_AVLSAEQLRDEEVHAGLGELLR_			0	0	1	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	802.430955	2404.27104	2.141	0.001718	-0.70031	-0.00056195	1.4406	0.001156	802.764664735207	14.302	0.15958	14.302	14.258	14.418	0	423	52	1.04178812298108	0.0341920120016164	1.04178812298108	629.482071813251	0	20.6599193055227						873	19	6	NaN	NaN	NaN	4.3725E-23	1	36368	145.31	138.63	1	545310			1828	1164	1547	1574	1828	1828		
AVLTFALDSVER	12	Unmodified	_AVLTFALDSVER_			0	0	0	Q9NQT4	Q9NQT4	Q9NQT4	EXOSC5	Exosome complex component RRP46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.861534	1319.70852	0.1214	8.023E-05	-1.3945	-0.00092156	-1.2731	-0.00084133	660.860487992704	14.737	0.17739	14.737	14.666	14.843	0	489	34	0.997481546940468	0.0221915758833877	0.997481546940468	403.700703941638	0	8.98137397446271						287	21	3	NaN	NaN	NaN	0.0018256	1	12979	41.824	32.847	1	65899			1829	3002	1548	1575	1829	1829		
AVLVDLEPGTMDSVR	15	Unmodified	_AVLVDLEPGTMDSVR_			0	0	0	P04350;P68371;Q3ZCM7	P04350;P68371;Q3ZCM7	P68371	TUBB4A;TUBB4B;TUBB8	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.413805	1600.81306	2.2804	0.0018276	2.2422	0.0017969	4.5226	0.0036245	801.416170459855	13.407	0.32813	13.407	13.274	13.602	0	357	100	1.08596037261705	0.0662081928032199	1.08596037261705	438.70920628979	0	26.7469646655558						2273	38	6	NaN	NaN	NaN	3.6668E-09	1	21614	150.44	94.243	1	2304500			1830	1449;512;1936	1549	1576	1830	1830		
AVLVDLEPGTMDSVR	15	Oxidation (M)	_AVLVDLEPGTM(Oxidation (M))DSVR_	AVLVDLEPGTM(1)DSVR	AVLVDLEPGTM(130)DSVR	0	1	0	P04350;P68371;Q3ZCM7	P04350;P68371;Q3ZCM7	P68371	TUBB4A;TUBB4B;TUBB8	Tubulin beta-4A chain;Tubulin beta-4B chain;Tubulin beta-8 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.411262	1616.80797	3.0014	0.0024294	-3.0013	-0.0024293	9.8333E-05	7.9592E-08	809.409606549553	11.332	0.29269	11.332	11.199	11.491	0	372	79	1.07593298845566	0.0521388447163624	1.07593298845566	434.621449001793	0	21.0614048300822						1710	34	5	NaN	NaN	NaN	1.0918E-05	1	22103	131.54	115.26	1	959720			1831	1449;512;1936	1549	1577	1831	1831	87	
AVLWQDSFSPHLK	13	Unmodified	_AVLWQDSFSPHLK_			0	0	0	Q14671	Q14671	Q14671	PUM1	Pumilio homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.936664	1526.78816	-2.3535	-0.0012001	-0.55125	-0.0002811	-2.9047	-0.0014812	509.936224766316	12.236	0.08868	12.236	12.183	12.272	0	783	25	0.798467866007927	0.0163568017170922	0.798467866007927	484.049127897589	0	9.91586004072667						129	11	3	NaN	NaN	NaN	0.001719	1	19325	43.168	31.813	1	25387			1832	1762	1550	1578	1832	1832		
AVMEQANLQR	10	Unmodified	_AVMEQANLQR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.298047	1158.58154	1.0039	0.00058254	-0.22774	-0.00013215	0.77613	0.00045038	580.297707137161	4.778	0.27486	4.778	4.7159	4.9908	0	657	58	0.884090832094921	0.0385972383107155	0.884090832094921	358.324338211412	0	15.6435621458751						382	32	4	NaN	NaN	NaN	1.8912E-05	1	8319	142.04	121.81	1	101790			1833	450	1551	1579	1833	1833		
AVMSNLSAHGVK	12	Unmodified	_AVMSNLSAHGVK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.321522	1212.62849	1.9839	0.0012048	-1.0687	-0.00064906	0.91514	0.00055579	607.32099804058	4.5652	0.1064	4.5652	4.5297	4.6361	0	531	28	0.969216233931596	0.0181894169559895	0.969216233931596	392.61985973569	0	7.36835195688502						187	13	3	NaN	NaN	NaN	0.0048078	1	9806	64.064	46.669	1	49705			1834	2420	1552	1580	1834	1834		
AVNTLNEALEFAK	13	Unmodified	_AVNTLNEALEFAK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.377549	1418.74054	1.8982	0.0013484	1.4249	0.0010122	3.3231	0.0023606	710.378697598543	13.327	0.37246	13.327	13.23	13.602	0	450	64	1.02367897599655	0.0422897180004469	1.02367897599655	414.003523811305	0	17.1031081849925						1285	43	5	NaN	NaN	NaN	9.1408E-17	1	16069	192.95	155.35	1	1882500			1835	922	1553	1581	1835	1835		
AVNVYSTSVTSDNLSR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AVNVYSTSVTSDNLSR_			1	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.931405	1753.84826	2.2321	0.0019597	0.17684	0.00015525	2.409	0.0021149	877.931469664417	12.192	0.27493	12.192	12.112	12.387	0	249	49	1.15795408347545	0.0319224291995859	1.15795408347545	467.443127264337	0	12.8864523627246						827	32	5	NaN	NaN	NaN	1.2661E-33	1	26005	241.56	207.8	1	371980			1836	1863	1554	1582	1836	1836		
AVPLALALISVSNPR	15	Unmodified	_AVPLALALISVSNPR_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.961583	1519.90861	1.212	0.00092232	0.87852	0.00066852	2.0906	0.0015908	760.962360833544	18.231	0.22168	18.231	18.124	18.346	0	300	37	1.12400150285141	0.0239978708876349	1.12400150285141	454.284439062695	0	9.69915012322673						692	26	5	NaN	NaN	NaN	2.0274E-06	1	19145	108.2	103.37	1	327380			1837	1642	1555	1583	1837	1837		
AVPLAVPLGQTEVFQALQR	19	Unmodified	_AVPLAVPLGQTEVFQALQR_			0	0	0	Q86W42	Q86W42	Q86W42	THOC6	THO complex subunit 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.72123	2036.14186	-0.34514	-0.0002346	-0.49583	-0.00033703	-0.84098	-0.00057163	680.055639863702	18.24	0.062059	18.24	18.213	18.275	0	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	577.678851183586	0	12.2354906463452						143	8	3	NaN	NaN	NaN	4.0512E-05	1	32274	57.003	56.384	1	32703			1838	2177	1556	1584	1838	1838		
AVPLAVPLGQTEVFQALQR	19	Unmodified	_AVPLAVPLGQTEVFQALQR_			0	0	0	Q86W42	Q86W42	Q86W42	THOC6	THO complex subunit 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.07821	2036.14186	0.34021	0.0003467	0.84751	0.00086368	1.1877	0.0012104	1019.58057636176	18.24	0.062059	18.24	18.213	18.275	0	138	49	1.23157729878518	0.0317606704194782	1.23157729878518	496.622392664918	0	12.8072027244425						291	8	4	NaN	NaN	NaN	0.00095433	1	32275	46.358	45.923	1	69359			1839	2177	1556	1584	1839	1839		
AVPLIHQEGNR	11	Unmodified	_AVPLIHQEGNR_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.338561	1232.66257	2.1901	0.001352	-1.5862	-0.00097925	0.60384	0.00037278	617.337627976806	4.2815	0.15963	4.2815	4.2371	4.3968	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	386.815776173876	0	7.37414475281224						175	19	3	NaN	NaN	NaN	0.048025	1	10406	41.796	37.593	1	45048			1840	57	1557	1585	1840	1840		
AVPVWDVLASGYVSGAAR	18	Unmodified	_AVPVWDVLASGYVSGAAR_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.480868	1816.94718	0.90519	0.00082326	-3.4908	-0.0031748	-2.5856	-0.0023516	909.978051989962	17.92	0.13297	17.92	17.867	18	0	288	40	1.13199748998575	0.0259815997142345	1.13199748998575	456.840493897503	0	10.4854003217334						219	16	2	NaN	NaN	NaN	0.0046297	1	27653	40.83	32.023	1	65235			1841	1298	1558	1586	1841	1841		
AVQALCAVYEHWVPR	15	Unmodified	_AVQALCAVYEHWVPR_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.306763	1797.89846	-1.304	-0.00078278	-1.1192	-0.00067187	-2.4232	-0.0014546	600.640242585293	14.045	0.15075	14.045	13.992	14.143	0	726	28	0.837263974740672	0.0183515663260597	0.837263974740672	506.880724615971	0	11.1100626777502						261	18	4	NaN	NaN	NaN	0.0015407	1	27163	39.702	33.675	1	60576			1842	275	1559	1587	1842	1842		
AVQALCAVYEHWVPR	15	Unmodified	_AVQALCAVYEHWVPR_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.956506	1797.89846	1.641	0.0014768	0.29153	0.00026237	1.9325	0.0017392	900.458727687708	14.045	0.12413	14.045	13.992	14.116	0	201	52	1.18983705239708	0.0338268396719554	1.18983705239708	480.221342989277	0	13.6526008696931						568	15	4	NaN	NaN	NaN	1.4925E-08	1	27169	105.08	82.122	1	179980			1843	275	1559	1587	1843	1843		
AVQDLCGWR	9	Unmodified	_AVQDLCGWR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.766383	1103.51821	0.66255	0.00036624	-0.65642	-0.00036285	0.006135	3.3912E-06	552.765834230299	8.0947	0.18635	8.0947	7.9881	8.1745	0	663	58	0.880024865079826	0.0386186640056191	0.880024865079826	356.88567626573	0	15.6614302243314						603	22	4	NaN	NaN	NaN	0.0004641	1	6805	91.783	73.446	1	207820			1844	3151	1560	1588	1844	1844		
AVQEIMQEK	9	Unmodified	_AVQEIMQEK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.276249	1074.53795	1.5407	0.00082932	-0.25747	-0.00013859	1.2832	0.00069073	538.276681240254	4.9376	0.15962	4.9376	4.8578	5.0174	0	669	46	0.875957769340875	0.0305138129080004	0.875957769340875	355.354445976682	0	12.3787007320201						302	19	2	NaN	NaN	NaN	0.0011364	1	6068	100.84	59.811	1	291590			1845	801	1561	1589	1845	1845		
AVQELWLR	8	Unmodified	_AVQELWLR_			0	0	0	P42126	P42126	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.790184	1013.56581	0.20775	0.0001055	-0.98545	-0.0005004	-0.7777	-0.00039491	507.789954341753	10.906	0.13303	10.906	10.844	10.977	0	681	25	0.867820189810857	0.016279679599705	0.867820189810857	352.321153863453	0	6.60929022905708						226	16	3	NaN	NaN	NaN	0.010865	1	4597	60.709	40.475	1	64487			1846	1041	1562	1590	1846	1846		
AVQFGTGELCDAISAVEEK	19	Unmodified	_AVQFGTGELCDAISAVEEK_			0	0	0	Q96EK5	Q96EK5	Q96EK5	KIAA1279	KIF1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.48569	2022.95682	1.1576	0.0011721	0.15636	0.00015831	1.314	0.0013304	1012.48580247254	16.245	0.17733	16.245	16.174	16.351	0	171	70	1.20972836110953	0.0457343371843317	1.20972836110953	487.833540239586	0	18.4427713992591						807	21	5	NaN	NaN	NaN	8.8612E-11	1	32033	145.73	139.53	1	180100			1847	2512	1563	1591	1847	1847		
AVQGMLDFDYVCSR	14	Unmodified	_AVQGMLDFDYVCSR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.876533	1659.73851	2.2549	0.0018735	1.2495	0.0010381	3.5043	0.0029117	830.877756685578	14.178	0.14188	14.178	14.134	14.276	0	363	34	1.08195024817156	0.0220602476695482	1.08195024817156	436.956052849828	0	8.90924399053057						251	17	2	NaN	NaN	NaN	0.0021431	1	23320	61.067	57.33	1	93519			1848	1235	1564	1592	1848	1848		
AVQHCLALLNLTLQK	15	Unmodified	_AVQHCLALLNLTLQK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.490182	1720.96581	2.628	0.002264	0.068885	5.9344E-05	2.6969	0.0023233	861.991582052615	13.54	0.088669	13.54	13.504	13.593	0	258	28	1.15196821829984	0.0179625356920501	1.15196821829984	465.096431191884	0	7.25220636543196						188	11	4	NaN	NaN	NaN	0.00013115	1	25091	79.795	71.83	1	41774			1849	2422	1565	1593	1849	1849		
AVQLYQQTANVFENEER	17	Unmodified	_AVQLYQQTANVFENEER_			0	0	0	Q99747	Q99747	Q99747	NAPG	Gamma-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.99507	2037.97558	1.4278	0.0014564	-1.4834	-0.0015131	-0.055596	-5.6708E-05	1020.49513286109	12.423	0.079833	12.423	12.378	12.458	0	192	67	1.1958073123591	0.0437428836446498	1.1958073123591	482.195538840852	0	17.6388144908338						265	10	3	NaN	NaN	NaN	0.00095485	1	32301	45.654	43.264	1	46404			1850	2671	1566	1594	1850	1850		
AVQTLQMELQQIMK	14	Unmodified	_AVQTLQMELQQIMK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.941676	1659.8688	1.4653	0.0012175	1.9626	0.0016308	3.4279	0.0028484	831.444526825395	17.007	0.23057	17.007	16.892	17.122	0	336	79	1.09998710857178	0.0520527185893278	1.09998710857178	444.240121739326	0	21.0219791330189						786	27	4	NaN	NaN	NaN	1.5264E-05	1	23347	95.138	66.81	1	160240			1851	1558	1567	1595	1851	1851		
AVQYNEPLK	9	Unmodified	_AVQYNEPLK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.284931	1060.55531	1.4383	0.00076416	-3.3756	-0.0017934	-1.9373	-0.0010292	531.283079181856	5.1415	0.21286	5.1415	5.0706	5.2835	0	645	28	0.892219381832517	0.0182854326605286	0.892219381832517	362.011788732333	0	7.41918671570085						210	25	3	NaN	NaN	NaN	0.066078	1	5744	27.736	17.657	1	57794			1852	1766	1568	1596	1852	1852		
AVSDWIDEQEK	11	Unmodified	_AVSDWIDEQEK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.309332	1318.60411	1.0514	0.00069423	2.0245	0.0013368	3.0759	0.002031	660.310954432021	9.3189	0.17737	9.3189	9.2479	9.4253	0	525	46	0.973257487423603	0.030307312656189	0.973257487423603	393.900147630462	0	12.266080748228						677	21	7	NaN	NaN	NaN	1.3137E-07	1	12923	140.05	105.27	1	512050			1853	1606	1569	1597	1853	1853		
AVSEGNLLLLHEALAK	16	Unmodified	_AVSEGNLLLLHEALAK_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.989317	1676.94612	-0.22304	-0.0001249	-1.4065	-0.00078765	-1.6296	-0.00091255	560.322463351115	13.105	0.12416	13.105	13.052	13.176	0	657	34	0.884090832094921	0.0223612701402726	0.884090832094921	535.524801728529	0	13.545005019328						294	15	4	NaN	NaN	NaN	0.030105	1	23831	27.357	26.618	1	84501			1854	1971	1570	1598	1854	1854		
AVSEGNLLLLHEALAK	16	Unmodified	_AVSEGNLLLLHEALAK_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.480337	1676.94612	1.6648	0.0013975	1.3762	0.0011553	3.041	0.0025528	839.481283246605	13.096	0.097522	13.096	13.061	13.159	0	234	46	1.16792504164217	0.0299087706952383	1.16792504164217	471.637729643663	0	12.0779195617735						324	12	4	NaN	NaN	NaN	1.4728E-08	1	23834	108.91	102.89	1	93807			1855	1971	1570	1598	1855	1855		
AVSIIECDMNVDFDAPLGYK	20	Unmodified	_AVSIIECDMNVDFDAPLGYK_			0	0	0	Q92890	Q92890	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1129.0294	2256.04426	0.27009	0.00030494	2.0431	0.0023067	2.3132	0.0026117	1129.53294078465	17.14	0.088672	17.14	17.105	17.193	0	87	40	1.26527909472281	0.0257472537189445	1.26527909472281	509.87538830467	0	10.3754903107774						269	11	4	NaN	NaN	NaN	2.8358E-05	1	35240	47.27	46.965	1	42583			1856	2440	1571	1599	1856	1856		
AVSILPLLGHGVPR	14	Unmodified	_AVSILPLLGHGVPR_			0	0	0	Q9Y2W2	Q9Y2W2	Q9Y2W2	WBP11	WW domain-binding protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.937911	1427.86127	1.9811	0.0014163	1.1149	0.00079712	3.096	0.0022135	714.93876310136	14.116	0.21281	14.116	14.028	14.24	0	357	40	1.08596037261705	0.0260640179471912	1.08596037261705	439.164724619758	0	10.5403452583431						462	25	3	NaN	NaN	NaN	7.4584E-05	1	16343	103.87	82.784	1	138640			1857	3356	1572	1600	1857	1857		
AVSNLLSTQLTFQAIHK	17	Unmodified	_AVSNLLSTQLTFQAIHK_			0	0	0	Q14432	Q14432	Q14432	PDE3A	cGMP-inhibited 3,5-cyclic phosphodiesterase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.0229	1870.03125	1.4254	0.0013342	0.2917	0.00027303	1.7171	0.0016073	936.023013857336	13.859	0.070954	13.859	13.832	13.903	0	117	25	1.24546401832526	0.015862925037432	1.24546401832526	502.524094649403	0	6.40042741150074						138	9	3	NaN	NaN	NaN	0.00010883	1	28943	65.12	61.138	1	30009			1858	1751	1573	1601	1858	1858		
AVTELNEPLSNEDR	14	Unmodified	_AVTELNEPLSNEDR_			0	0	0	Q04917	Q04917	Q04917	YWHAH	14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.886466	1585.75838	2.445	0.001941	-2.9831	-0.0023683	-0.53812	-0.00042721	793.88620904025	7.6156	0.27499	7.6156	7.527	7.802	0	411	64	1.04982941439551	0.0421905974214265	1.04982941439551	424.147479200856	0	17.0456602728931						1012	32	5	NaN	NaN	NaN	3.3515E-17	1	21126	184.43	132.9	1	400350			1859	1547	1574	1602	1859	1859		
AVTEQGAELSNEER	14	Unmodified	_AVTEQGAELSNEER_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.862991	1531.71143	3.3053	0.0025347	-1.0643	-0.00081618	2.241	0.0017185	766.862783223488	4.5031	0.46108	4.5031	4.4588	4.9199	0	486	151	0.999498404980629	0.100933865524754	0.999498404980629	403.936294587638	0	40.7913123575883						1882	53	5	NaN	NaN	NaN	8.2756E-33	1	19480	252.75	213.46	1	1464000			1860	863	1575	1603	1860	1860		
AVTEQGHELSNEER	14	Unmodified	_AVTEQGHELSNEER_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.87389	1597.73323	3.1971	0.0025573	-2.3732	-0.0018983	0.82388	0.000659	799.871935574859	2.9513	0.31035	2.9513	2.9158	3.2262	0	438	100	1.03173026378327	0.0664645019951173	1.03173026378327	416.808088572276	0	26.8509541756667						1130	36	5	NaN	NaN	NaN	5.5221E-13	1	21495	146.58	130.29	1	417380			1861	932	1576	1604	1861	1861		
AVTEQGHELSNEER	14	Unmodified	_AVTEQGHELSNEER_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.585019	1597.73323	0.28879	0.00015409	2.0391	0.001088	2.3279	0.0012421	533.586205924507	2.9513	0.41677	2.9513	2.9158	3.3326	0	777	91	0.802556497112065	0.0613295330707884	0.802556497112065	486.333822870442	0	37.164519109252						1279	48	5	NaN	NaN	NaN	6.4766E-05	1	21496	108.24	93.096	1	635230			1862	932	1576	1604	1862	1862		
AVTGYNDPETGNIISLFQAMNK	22	Unmodified	_AVTGYNDPETGNIISLFQAMNK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1192.08356	2382.15256	-0.41061	-0.00048948	0.41448	0.0004941	0.0038756	4.6201E-06	1192.58669094712	19.117	0.053204	19.117	19.1	19.153	0	66	28	1.27913350869533	0.0178079416067196	1.27913350869533	515.291293930712	0	7.17382291245622						107	7	3	NaN	NaN	NaN	0.048146	1	36263	13.525	13.329	1	17655			1863	718	1577	1605	1863	1863		
AVTGYTDPYTGQQISLFQAMQK	22	Unmodified	_AVTGYTDPYTGQQISLFQAMQK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1224.09921	2446.18386	0.362	0.00044313	-1.6524	-0.0020227	-1.2904	-0.0015795	1224.59808436478	15.845	0.11529	15.845	15.783	15.899	0	66	31	1.27913350869533	0.0197852478439124	1.27913350869533	515.21303680145	0	7.96915846253501						246	14	4	NaN	NaN	NaN	0.00096858	1	36555	36.96	36.262	1	39285			1864	1298	1578	1606	1864	1864		
AVTHTSPEDVSFAESR	16	Unmodified	_AVTHTSPEDVSFAESR_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.910473	1731.80639	2.7801	0.0024101	-2.2192	-0.0019238	0.56096	0.0004863	866.908543893091	5.9307	0.088733	5.9307	5.8953	5.984	0	357	28	1.08596037261705	0.018041831774515	1.08596037261705	438.424457292485	0	7.28385722329978						218	11	4	NaN	NaN	NaN	0.0006489	1	25371	62.454	46.838	1	46013			1865	2739	1579	1607	1865	1865		
AVTLHDQGTAQWADLSSQFYLR	22	Unmodified	_AVTLHDQGTAQWADLSSQFYLR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.415305	2506.22409	1.5346	0.0012835	-0.075605	-6.3238E-05	1.459	0.0012203	836.749448947321	15.402	0.19521	15.402	15.349	15.544	0	507	67	0.985374541851584	0.0444046531951731	0.985374541851584	595.256005850146	0	26.8244564675396						1080	23	6	NaN	NaN	NaN	2.7417E-17	1	36856	186.56	168.16	1	394060			1866	804	1580	1608	1866	1866		
AVTPPMPLLTPATPGGLPPAAAVAAAAATAK	31	Unmodified	_AVTPPMPLLTPATPGGLPPAAAVAAAAATAK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	932.189367	2793.54627	0.84357	0.00078637	0.36417	0.00033948	1.2077	0.0011258	932.524187497197	19.277	0.088664	19.277	19.224	19.312	0	348	76	1.09197348738011	0.0501162317306705	1.09197348738011	659.277238297496	0	30.257594374883						467	11	4	NaN	NaN	NaN	0.00028222	1	37881	35.777	34.14	1	90533			1867	3225	1581	1609	1867	1867		
AVTPPMPLLTPATPGGLPPAAAVAAAAATAK	31	Unmodified	_AVTPPMPLLTPATPGGLPPAAAVAAAAATAK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	932.189367	2793.54627	0.51022	0.00047562	1.2134	0.0011311	1.7236	0.0016067	932.524851736647	19.268	0.1064	19.268	19.206	19.312	0	180	109	1.203763835057	0.0715989836477937	1.203763835057	726.770478009301	0	43.2277711418562						877	13	5	NaN	NaN	NaN	0.00026177	1	37882	57.464	56.503	1	167690			1868	3225	1581	1609	1868	1868		
AVTSPGQALSTVVK	14	Unmodified	_AVTSPGQALSTVVK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.387916	1356.76128	1.0435	0.00070894	-0.32583	-0.00022137	0.71766	0.00048757	679.388000706776	10.268	0.15962	10.268	10.188	10.347	0	489	31	0.997481546940468	0.0201699767195437	0.997481546940468	403.586443010621	0	8.16088195798324						272	19	3	NaN	NaN	NaN	0.06183	1	14112	31.04	25.013	1	69269			1869	2080	1582	1610	1869	1869		
AVTVMMDPNSTQR	13	Unmodified	_AVTVMMDPNSTQR_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.344868	1448.67518	1.7525	0.0012712	-1.4858	-0.0010777	0.26667	0.00019343	725.344484091422	7.2432	0.21282	7.2432	7.1368	7.3496	0	486	37	0.999498404980629	0.0242006280672292	0.999498404980629	404.143607193264	0	9.78543745011984						550	25	6	NaN	NaN	NaN	0.0035977	1	16935	45.939	42.594	1	125010			1870	2947	1583	1611	1870	1870		
AVTVYTNYPFPGETFNR	17	Unmodified	_AVTVYTNYPFPGETFNR_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.481065	1974.94758	2.2281	0.0022025	-0.21069	-0.00020826	2.0175	0.0019942	988.982453616018	13.841	0.23053	13.841	13.717	13.948	0	204	61	1.18784641916898	0.039837296457305	1.18784641916898	479.088813925343	0	16.0673996248394						654	27	3	NaN	NaN	NaN	1.8993E-06	1	31197	97.949	86.978	1	129260			1871	971	1584	1612	1871	1871		
AVVIVDDR	8	Unmodified	_AVVIVDDR_			0	0	0	P23246;Q15233	P23246;Q15233	P23246	SFPQ;NONO	Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.753267	885.491981	-1.3335	-0.00059175	0.59971	0.00026612	-0.73379	-0.00032562	443.753864085851	5.381	0.2039	5.381	5.3189	5.5228	0	771	58	0.806643990516186	0.0388015049244176	0.806643990516186	328.118256859369	0	15.7832728056067						415	24	3	NaN	NaN	NaN	0.067216	1	2081	31.952	25.19	1	117900			1872	814;1824	1585	1613	1872	1872		
AVVNEDTQGNVSQLQAEVK	19	Unmodified	_AVVNEDTQGNVSQLQAEVK_			0	0	0	Q9NS87	Q9NS87	Q9NS87	KIF15	Kinesin-like protein KIF15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.01346	2028.01236	1.905	0.0019336	-1.4503	-0.001472	0.45475	0.00046158	1015.51456134713	9.1326	0.053191	9.1326	9.106	9.1592	0	198	31	1.1918274123006	0.0199077014377831	1.1918274123006	480.606665212194	0	8.02781837479642						115	7	3	NaN	NaN	NaN	4.309E-07	1	32115	89.923	76.704	1	19665			1873	3035	1586	1614	1873	1873		
AVVPGPAEHPLQYNYTFWYSR	21	Unmodified	_AVVPGPAEHPLQYNYTFWYSR_			0	0	0	O60573	O60573	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.409603	2494.20698	1.5578	0.0012967	-1.7138	-0.0014266	-0.15599	-0.00012985	832.742331521053	14.489	0.070943	14.489	14.453	14.524	1.7764E-15	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	591.612583738514	0	12.1999999965434						211	9	4	NaN	NaN	NaN	0.00089428	1	36801	44.16	43.927	1	40831			1874	269	1587	1615	1874	1874		
AVVQVFEGTSGIDAK	15	Unmodified	_AVVQVFEGTSGIDAK_			0	0	0	P21281	P21281	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.901388	1519.78822	2.3632	0.0017982	-5.5443	-0.0042187	-3.1811	-0.0024205	761.399100456413	10.995	0.14187	10.995	10.959	11.101	0	393	76	1.0618830335572	0.05014386764575	1.0618830335572	429.178528587184	0	20.2665177366865						713	17	5	NaN	NaN	NaN	0.065391	1	19136	44.82	22.816	1	176540			1875	789	1588	1616	1875	1875		
AVVVGFDPHFSYMK	14	Unmodified	_AVVVGFDPHFSYMK_			0	0	0	A6NDG6	A6NDG6	A6NDG6	PGP	Phosphoglycolate phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.934155	1595.78064	0.97072	0.00051733	-0.57154	-0.00030459	0.39918	0.00021274	533.268961313308	12.928	0.15077	12.928	12.857	13.008	0	660	40	0.882057989648486	0.0264269571469923	0.882057989648486	534.515826067993	0	16.0143970075225						333	18	3	NaN	NaN	NaN	0.016474	1	21449	43.306	42.049	1	86714			1876	12	1589	1617	1876	1876		
AVVVGFDPHFSYMK	14	Unmodified	_AVVVGFDPHFSYMK_			0	0	0	A6NDG6	A6NDG6	A6NDG6	PGP	Phosphoglycolate phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.897594	1595.78064	2.7036	0.0021599	-0.38073	-0.00030416	2.3229	0.0018557	798.897254638831	12.928	0.12423	12.928	12.866	12.99	1.7764E-15	258	34	1.15196821829984	0.0219542113279454	1.15196821829984	465.38783327658	0	8.86936174010771						367	15	4	NaN	NaN	NaN	7.1148E-06	1	21450	90.306	86.57	1	101870			1877	12	1589	1617	1877	1877		
AVVVNAAQLASYSQSK	16	Unmodified	_AVVVNAAQLASYSQSK_			0	0	0	Q02978	Q02978	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.438669	1634.86278	1.8141	0.0014847	-0.20454	-0.00016741	1.6096	0.0013173	818.438741840869	10.347	0.088662	10.347	10.312	10.401	0	243	22	1.16194328902838	0.0139612606288984	1.16194328902838	469.32112975916	0	5.63910018078059						140	11	3	NaN	NaN	NaN	5.5036E-08	1	22635	99.589	92.032	1	31390			1878	1535	1590	1618	1878	1878		
AVVYSNTIQSIMAIVK	16	Unmodified	_AVVYSNTIQSIMAIVK_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.984398	1735.95424	1.1228	0.00097568	0.83388	0.00072462	1.9567	0.0017003	869.486743694319	18.931	0.062063	18.931	18.905	18.967	0	234	40	1.16792504164217	0.0259173708713474	1.16792504164217	471.506315993581	0	10.4631749676383						238	8	4	NaN	NaN	NaN	4.3706E-05	1	25499	51.569	48.064	1	50897			1879	520	1591	1619	1879	1879		
AVYMMPTEGDDSSK	14	Unmodified	_AVYMMPTEGDDSSK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.826174	1529.6378	2.6652	0.0020411	-0.90985	-0.00069679	1.7554	0.0013443	765.8253242265	7.8108	0.13308	7.8108	7.7487	7.8818	0	369	58	1.07793901817685	0.0381250913283928	1.07793901817685	435.642495231538	0	15.4080236795978						386	16	2	NaN	NaN	NaN	0.0033827	1	19406	67.548	65.069	1	113160			1880	2452	1592	1620	1880	1880		
AVYSTNCPVWEEAFR	15	Unmodified	_AVYSTNCPVWEEAFR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.919786	1827.82502	2.0838	0.0019065	1.5519	0.0014198	3.6357	0.0033264	914.921179892051	14.435	0.15074	14.435	14.365	14.515	0	297	43	1.12600091227925	0.0279936646882595	1.12600091227925	454.399949576913	0	11.2969001038104						601	18	5	NaN	NaN	NaN	3.1089E-06	1	27913	82.437	77.882	1	184110			1881	2726	1593	1621	1881	1881		
AVYTQDCPLAAAK	13	Unmodified	_AVYTQDCPLAAAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.350477	1406.6864	2.2758	0.0016029	-1.4047	-0.00098937	0.87109	0.00061355	704.349904089661	7.0214	0.31036	7.0214	6.8974	7.2077	0	414	103	1.04781950764076	0.0684265902923953	1.04781950764076	423.801676823431	0	27.6758578111616						1975	36	5	NaN	NaN	NaN	1.5069E-07	1	15670	153.33	136.87	1	836990			1882	1136	1594	1622	1882	1882		
AWALGQGLECFETSVK	16	Unmodified	_AWALGQGLECFETSVK_			0	0	0	Q9BW83	Q9BW83	Q9BW83	IFT27	Intraflagellar transport protein 27 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.437812	1794.86107	1.1416	0.0010256	1.5759	0.0014158	2.7174	0.0024414	898.940823782269	16.44	0.15075	16.44	16.377	16.528	0	273	31	1.14198628764525	0.0199707283140815	1.14198628764525	460.914614733428	0	8.06034244580201						278	18	4	NaN	NaN	NaN	3.1415E-06	1	27098	91.939	79.921	1	59878			1883	2776	1595	1623	1883	1883		
AWDDFFPGSDR	11	Unmodified	_AWDDFFPGSDR_			0	0	0	O75915	O75915	O75915	ARL6IP5	PRA1 family protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.783284	1311.55202	0.98197	0.00064494	0.057047	3.7468E-05	1.039	0.00068241	656.783331739224	14.595	0.1596	14.595	14.524	14.684	0	534	52	0.967195187796614	0.0343720622770389	0.967195187796614	391.468426419229	0	13.9119562443539						653	19	4	NaN	NaN	NaN	1.6802E-05	1	12695	114.39	102.33	1	277320			1884	368	1596	1624	1884	1884		
AWDIAIATMK	10	Unmodified	_AWDIAIATMK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.296985	1118.57942	0.92425	0.00051785	0.10298	5.77E-05	1.0272	0.00057555	560.297633310759	13.496	0.3104	13.496	13.318	13.629	0	609	73	0.916577990479294	0.0487104878258442	0.916577990479294	371.647706255946	0	19.7507918138169						849	36	5	NaN	NaN	NaN	0.00040417	1	7232	95.311	59.1	1	401890			1885	1530	1597	1625	1885	1885		
AWEEYYK	7	Unmodified	_AWEEYYK_			0	0	0	Q92945;Q96AE4	Q92945;Q96AE4	Q92945	KHSRP;FUBP1	Far upstream element-binding protein 2;Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.724175	987.433798	0.52367	0.00025907	0.67544	0.00033415	1.1991	0.00059323	494.724340026341	6.9683	0.18628	6.9683	6.9062	7.0925	0	681	43	0.867820189810857	0.0284933997158956	0.867820189810857	352.446012420517	0	11.5719652850668						430	22	4	NaN	NaN	NaN	0.016696	1	3999	69.093	65.278	1	190980			1886	2446;2473	1598	1626	1886	1886		
AWGAVVPLVGK	11	Unmodified	_AWGAVVPLVGK_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.829309	1095.64407	-0.14258	-7.825E-05	-2.3111	-0.0012684	-2.4537	-0.0013467	548.828567186364	13.167	0.13304	13.167	13.114	13.247	0	675	70	0.871889544407995	0.046761894798792	0.871889544407995	353.617822734681	0	18.9655209558966						671	16	4	NaN	NaN	NaN	0.0051074	1	6610	69.905	59.826	1	323190			1887	3057	1599	1627	1887	1887		
AWGILTFK	8	Unmodified	_AWGILTFK_			0	0	0	P82930	P82930	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.271096	934.527639	-2.3368	-0.0010943	0.27632	0.00012939	-2.0605	-0.00096487	468.271224548712	14.843	0.12416	14.843	14.799	14.923	-1.7764E-15	747	37	0.822982596624503	0.024497688241599	0.822982596624503	334.496040783956	0	9.95692953749466						247	15	3	NaN	NaN	NaN	0.0012387	1	2969	85.813	60.962	1	85098			1888	1476	1600	1628	1888	1888		
AWGPGLEGGVVGK	13	Unmodified	_AWGPGLEGGVVGK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.830037	1225.64552	1.4214	0.00087248	1.3284	0.0008154	2.7497	0.0016879	613.831051869172	10.019	0.19505	10.019	9.9484	10.143	0	552	55	0.955063035883597	0.0364115845953142	0.955063035883597	386.840288440672	0	14.7482075614012						741	22	4	NaN	NaN	NaN	2.7159E-05	1	10172	97.277	82.515	1	336940			1889	792	1601	1629	1889	1889		
AWLLSMIQSK	10	Unmodified	_AWLLSMIQSK_			0	0	0	Q9UBU9	Q9UBU9	Q9UBU9	NXF1	Nuclear RNA export factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.825909	1175.63727	-0.063431	-3.735E-05	-1.3984	-0.0008234	-1.4618	-0.00086075	588.825345464411	16.36	0.097543	16.36	16.324	16.422	0	552	31	0.955063035883597	0.0202314531592178	0.955063035883597	387.023495114432	0	8.19846169177748						210	12	4	NaN	NaN	NaN	1.9297E-06	1	8764	106.93	82.805	1	55398			1890	3191	1602	1630	1890	1890		
AWLVSSGCPLQVK	13	Unmodified	_AWLVSSGCPLQVK_			0	0	0	Q8IX01	Q8IX01	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.884487	1443.75442	1.0667	0.00077113	3.483	0.0025178	4.5497	0.0032889	723.388567019852	12.582	0.133	12.582	12.493	12.626	0	420	58	1.04379886199097	0.0382357127621848	1.04379886199097	422.069925384703	0	15.4609714766157						244	16	3	NaN	NaN	NaN	0.044139	1	16791	40.386	32.385	1	39527			1891	2209	1603	1631	1891	1891		
AWRDPDEPVLLEEPVVLALAEK	22	Unmodified	_AWRDPDEPVLLEEPVVLALAEK_			0	0	1	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.447723	2488.32134	0.97542	0.00081003	-1.6249	-0.0013494	-0.64953	-0.0005394	830.780841943348	18.781	0.12415	18.781	18.71	18.834	0	531	61	0.969216233931596	0.0404461214700302	0.969216233931596	585.51814649229	0	24.4341120658587						653	15	4	NaN	NaN	NaN	7.3934E-08	1	36770	46.353	38.604	1	159060			1892	698	1604	1632	1892	1892		
AWTQVLLGQAEDK	13	Unmodified	_AWTQVLLGQAEDK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.882998	1457.75144	1.4188	0.0010356	-0.61819	-0.0004512	0.80066	0.00058439	729.88297477328	13.3	0.19511	13.3	13.221	13.416	0	420	49	1.04379886199097	0.0321696140017538	1.04379886199097	422.031477398503	0	13.0069022096876						632	23	5	NaN	NaN	NaN	2.6261E-05	1	17198	121.96	116.47	1	222230			1893	1737	1605	1633	1893	1893		
AWVWNTHADFADECPKPELLAIR	23	Unmodified	_AWVWNTHADFADECPKPELLAIR_			0	0	1	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	913.783112	2738.32751	1.5459	0.0014126	0.16216	0.00014818	1.7081	0.0015608	914.117842806242	15.18	0.19506	15.18	15.118	15.313	0	411	43	1.04982941439551	0.028132878019673	1.04982941439551	633.896130358012	0	16.9868764086526						613	23	6	NaN	NaN	NaN	0.011701	1	37720	25.883	25.669	1	154560			1894	1066	1606	1634	1894	1894		
AWVWNTHADFADECPKPELLAIR	23	Unmodified	_AWVWNTHADFADECPKPELLAIR_			0	0	1	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	685.589153	2738.32751	1.1894	0.00081546	1.4359	0.00098444	2.6253	0.0017999	685.840849504965	15.18	0.13306	15.18	15.127	15.26	0	471	64	1.00957851518677	0.0423247851454723	1.00957851518677	812.788201320287	0	34.07470094913						800	16	6	NaN	NaN	NaN	7.9075E-07	1	37721	80.026	77.841	1	291340			1895	1066	1606	1634	1895	1895		
AYAANSHQGQMLAQYIESFTQGSIEAHK	28	Unmodified	_AYAANSHQGQMLAQYIESFTQGSIEAHK_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	770.868722	3079.44578	-0.23956	-0.00018467	5.4256	0.0041824	5.186	0.0039978	771.376776854581	16.697	0.079799	16.697	16.67	16.75	0	498	22	0.991429299781895	0.0141277691793039	0.991429299781895	797.730112623566	0	11.3675749758507						95	10	3	NaN	NaN	NaN	0.045091	1	38324	2.7856	2.6363	1	13035			1896	3109	1607	1635	1896	1896		
AYADFYR	7	Unmodified	_AYADFYR_			0	0	0	P09669	P09669	P09669	COX6C	Cytochrome c oxidase subunit 6C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.211235	904.407917	-0.27531	-0.00012477	0.45141	0.00020458	0.1761	7.981E-05	453.211640683079	6.8087	0.15075	6.8087	6.7555	6.9062	0	744	43	0.82502364452135	0.0285687183645899	0.82502364452135	335.487378128032	0	11.6171754400747						328	18	3	NaN	NaN	NaN	0.014501	1	2398	61.494	55.747	1	98860			1897	610	1608	1636	1897	1897		
AYALAFAER	9	Unmodified	_AYALAFAER_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.266542	1010.51853	0.1629	8.2469E-05	-1.0324	-0.00052269	-0.86955	-0.00044023	506.266031706445	9.5938	0.11525	9.5938	9.5494	9.6647	0	651	34	0.888155670855968	0.0223550653870297	0.888155670855968	360.591599586539	0	9.07616654522042						234	14	3	NaN	NaN	NaN	0.0094958	1	4518	47.349	25.421	1	68860			1898	1195	1609	1637	1898	1898		
AYAPGGPAYQPVVEAFGTDILHK	23	Unmodified	_AYAPGGPAYQPVVEAFGTDILHK_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.077742	2400.2114	1.126	0.00090204	1.1126	0.00089124	2.2386	0.0017933	801.412946277012	16.298	0.26598	16.298	16.174	16.44	0	402	67	1.05585747106793	0.0441966271426135	1.05585747106793	637.989418643699	0	26.7052904671013						1430	31	6	NaN	NaN	NaN	7.152E-14	1	36352	173.26	168.67	1	578740			1899	1623	1610	1638	1899	1899		
AYCEGCYVATLEK	13	Unmodified	_AYCEGCYVATLEK_			0	0	0	Q15654	Q15654	Q15654	TRIP6	Thyroid receptor-interacting protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.344534	1562.67452	1.8739	0.0014661	0.56212	0.00043977	2.436	0.0019058	782.345054957814	8.7334	0.12434	8.7334	8.68	8.8044	0	378	31	1.07192009927972	0.0200699816330834	1.07192009927972	433.127829112101	0	8.109622704993						302	15	4	NaN	NaN	NaN	0.00049027	1	20423	74.524	68.261	1	119930			1900	1862	1611	1639	1900	1900		
AYCHILLGNYCVAVADAK	18	Unmodified	_AYCHILLGNYCVAVADAK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.001011	2036.9812	0.22947	0.00015604	-0.21237	-0.00014441	0.017103	1.163E-05	680.334982824315	12.165	0.088681	12.165	12.139	12.227	0	609	28	0.916577990479294	0.0182524998058907	0.916577990479294	554.399263216542	0	11.0401652116418						182	11	4	NaN	NaN	NaN	3.112E-05	1	32284	81.48	77.63	1	38753			1901	3359	1612	1640	1901	1901		
AYCHILLGNYCVAVADAK	18	Unmodified	_AYCHILLGNYCVAVADAK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.49788	2036.9812	0.87652	0.00089361	0.61649	0.00062851	1.493	0.0015221	1020.0001416044	12.174	0.070935	12.174	12.148	12.219	0	129	37	1.23753038177212	0.023813968179581	1.23753038177212	499.021527692335	0	9.60274022878866						217	9	4	NaN	NaN	NaN	0.0028051	1	32285	36.46	35.653	1	40211			1902	3359	1612	1640	1902	1902		
AYCVLVTGPNMGGK	14	Unmodified	_AYCVLVTGPNMGGK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.860154	1465.70576	1.3707	0.0010059	-1.1555	-0.00084801	0.21512	0.00015787	733.859644656653	9.913	0.15074	9.913	9.8598	10.01	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	411.432892392643	0	8.95847025368948						386	18	4	NaN	NaN	NaN	0.00033862	1	17445	70.389	56.394	1	95830			1903	1218	1613	1641	1903	1903		
AYDATHLVK	9	Unmodified	_AYDATHLVK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.271824	1016.5291	1.3596	0.00069242	0.94927	0.00048343	2.3089	0.0011759	509.272384891274	4.6007	0.25714	4.6007	4.512	4.7691	0	642	49	0.894250814548268	0.0325051879347241	0.894250814548268	363.037379810437	0	13.1960721378031						426	30	4	NaN	NaN	NaN	0.0065529	1	4664	72.038	61.21	1	173600			1904	634	1614	1642	1904	1904		
AYDGTTYLPGIVGLNNIK	18	Unmodified	_AYDGTTYLPGIVGLNNIK_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.006916	1907.99928	1.8123	0.0017308	-3.2863	-0.0031385	-1.474	-0.0014077	955.505073472029	16.103	0.13302	16.103	16.058	16.191	0	228	70	1.17191150690002	0.0458412293105268	1.17191150690002	472.777592152164	0	18.4934663471778						684	16	3	NaN	NaN	NaN	1.3758E-06	1	29796	86.243	84.655	1	250930			1905	1949	1615	1643	1905	1905		
AYDIAGSTK	9	Unmodified	_AYDIAGSTK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.234907	924.455261	0.60909	0.00028215	3.9961	0.0018511	4.6052	0.0021333	463.236693731306	3.8115	0.13299	3.8115	3.7672	3.9002	0	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	333.719009179951	0	8.29875022936886						136	16	2	NaN	NaN	NaN	0.072202	1	2782	28.096	3.2453	1	35318			1906	652	1616	1644	1906	1906		
AYEFAER	7	Unmodified	_AYEFAER_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.208692	884.402832	-1.3828	-0.00061288	3.3794	0.0014978	1.9966	0.00088489	443.210225603571	4.911	0.22162	4.911	4.8844	5.1061	0	795	34	0.790287188799094	0.0225015628542545	0.790287188799094	321.470836321812	0	9.15312348704146						284	26	3	NaN	NaN	NaN	0.016696	1	2062	58.687	16.458	1	74220			1907	1503	1617	1645	1907	1907		
AYEQLGQR	8	Unmodified	_AYEQLGQR_			0	0	0	Q8WUX1	Q8WUX1	Q8WUX1	SLC38A5	Sodium-coupled neutral amino acid transporter 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.745973	963.477394	0.53254	0.00025708	1.9248	0.00092918	2.4573	0.0011863	482.747123369431	3.4124	0.23952	3.4124	3.3681	3.6076	0	723	37	0.839303037468863	0.0244636567629751	0.839303037468863	340.980806568245	0	9.93876709871603						262	28	2	NaN	NaN	NaN	0.017511	1	3506	58.687	42.139	1	60391			1908	2373	1618	1646	1908	1908		
AYEYVECPIR	10	Unmodified	_AYEYVECPIR_			0	0	0	P53701	P53701	P53701	HCCS	Cytochrome c-type heme lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.305538	1298.59652	1.6558	0.0010768	0.54606	0.00035511	2.2018	0.0014319	650.305862511912	8.077	0.12426	8.077	8.0414	8.1656	0	543	37	0.961130371139249	0.0242609491796308	0.961130371139249	389.054168474814	0	9.82054432251795						348	15	3	NaN	NaN	NaN	0.0051988	1	12305	72.038	59.972	1	106080			1909	1244	1619	1647	1909	1909		
AYFETEK	7	Unmodified	_AYFETEK_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.210901	886.407249	-0.25222	-0.00011204	2.8735	0.0012764	2.6212	0.0011644	444.211673959414	4.2815	0.20394	4.2815	4.2371	4.4411	0	765	43	0.810730346695089	0.0285965426373002	0.810730346695089	329.77525302176	0	11.632020587617						311	24	3	NaN	NaN	NaN	0.02908	1	2089	66.087	44.159	1	87393			1910	709	1620	1648	1910	1910		
AYFHLLNQIAPK	12	Unmodified	_AYFHLLNQIAPK_			0	0	0	P13797;Q14651	P13797;Q14651	P13797	PLS3;PLS1	Plastin-3;Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.266233	1413.77687	-2.3002	-0.0010863	-0.3712	-0.00017531	-2.6714	-0.0012616	472.265989231994	11.917	0.18623	11.917	11.846	12.032	0	780	70	0.800512323802183	0.0470421969641546	0.800512323802183	485.636440421213	0	28.5384801757418						741	22	4	NaN	NaN	NaN	2.5097E-05	1	15899	133.68	115.17	1	448350			1911	683;1760	1621	1649	1911	1911		
AYFHLLNQIAPK	12	Unmodified	_AYFHLLNQIAPK_			0	0	0	P13797;Q14651	P13797;Q14651	P13797	PLS3;PLS1	Plastin-3;Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.895712	1413.77687	1.1101	0.00078582	1.624	0.0011496	2.7341	0.0019355	707.896812222513	11.917	0.18623	11.917	11.855	12.041	0	393	61	1.0618830335572	0.0401787479336657	1.0618830335572	429.468835605677	0	16.2499254116163						840	22	4	NaN	NaN	NaN	1.9847E-07	1	15902	103.8	82.653	1	348700			1912	683;1760	1621	1649	1912	1912		
AYGELPEHAK	10	Unmodified	_AYGELPEHAK_			0	0	0	P47813;O14602	P47813	P47813	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	372.189101	1113.54547	-0.36046	-0.00013416	1.0985	0.00040886	0.73807	0.0002747	372.189573377753	3.4213	0.21293	3.4213	3.3681	3.581	0	858	31	0.747263789720611	0.0205173250498002	0.747263789720611	454.513013416213	0	12.4793832698775						237	25	3	NaN	NaN	NaN	0.052435	1	7074	13.274	4.5108	1	69338			1913	107	1622	1650	1913	1913		
AYGELPEHAK	10	Unmodified	_AYGELPEHAK_			0	0	0	P47813;O14602	P47813	P47813	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.780013	1113.54547	2.0518	0.0011445	0.18042	0.00010063	2.2323	0.0012451	557.780117883971	3.4213	0.27499	3.4213	3.3503	3.6253	0	603	58	0.920633820089869	0.0385330681003847	0.920633820089869	373.31277641021	0	15.6249817487197						620	32	4	NaN	NaN	NaN	3.857E-05	1	7075	103.8	86.408	1	250270			1914	107	1622	1650	1914	1914		
AYGFSCDGEGVLK	13	Unmodified	_AYGFSCDGEGVLK_			0	0	0	Q99622	Q99622	Q99622	C12orf57	Protein C10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.819009	1401.62347	1.4597	0.0010244	1.5066	0.0010574	2.9663	0.0020818	701.820110529574	9.9484	0.088661	9.9484	9.913	10.002	0	450	37	1.02367897599655	0.0241605388886725	1.02367897599655	414.052331275269	0	9.77232871465696						281	11	4	NaN	NaN	NaN	0.0014023	1	15488	58.889	56.588	1	72383			1915	2659	1623	1651	1915	1915		
AYGQALAK	8	Unmodified	_AYGQALAK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.229428	820.444303	-0.46666	-0.0001919	1.031	0.00042396	0.5643	0.00023206	411.229915810905	2.9956	0.43449	2.9956	2.9513	3.3858	0	801	37	0.78619514174348	0.0245557049471467	0.78619514174348	320.187008998158	0	10.000593114112						708	50	3	NaN	NaN	NaN	0.0033122	1	1210	96.51	68.806	1	319960			1916	888	1624	1652	1916	1916		
AYGTNYIETLR	11	Unmodified	_AYGTNYIETLR_			0	0	0	Q9Y6A4	Q9Y6A4	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.830234	1299.64592	1.5668	0.0010197	0.76843	0.00050012	2.3352	0.0015198	650.832799261087	10.09	0.20394	10.09	9.9662	10.17	0	519	37	0.97729762293174	0.0242408171075922	0.97729762293174	395.595116964459	0	9.8123116786316						285	24	2	NaN	NaN	NaN	0.015589	1	12342	32.549	26.683	1	81548			1917	3456	1625	1653	1917	1917		
AYHEQLSVAEITNACFEPANQMVK	24	Unmodified	_AYHEQLSVAEITNACFEPANQMVK_			0	0	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	917.435272	2749.28399	1.4875	0.0013647	-2.3146	-0.0021235	-0.8271	-0.00075881	917.768338288663	14.081	0.46106	14.081	13.912	14.373	0	453	52	1.02166545906632	0.0342297995657299	1.02166545906632	616.878076292141	0	20.667834779567						1006	53	6	NaN	NaN	NaN	1.3914E-09	1	37751	113.66	111.06	1	187910			1918	1447;1448	1626	1654	1918	1918		
AYHEQLSVAEITNACFEPANQMVK	24	Unmodified	_AYHEQLSVAEITNACFEPANQMVK_			0	0	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	917.435272	2749.28399	2.0181	0.0018515	0.26111	0.00023955	2.2792	0.002091	917.770375882342	13.717	0.3724	13.717	13.664	14.036	0	447	106	1.02569221487577	0.0704926650629083	1.02569221487577	619.309409509165	0	42.5632271959133						3218	43	8	NaN	NaN	NaN	8.564E-42	1	37752	249.12	239.96	1	2063100			1919	1447;1448	1626	1654	1919	1919		
AYHEQLSVAEITNACFEPANQMVK	24	Oxidation (M)	_AYHEQLSVAEITNACFEPANQM(Oxidation (M))VK_	AYHEQLSVAEITNACFEPANQM(1)VK	AYHEQLSVAEITNACFEPANQM(110)VK	0	1	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	922.76691	2765.2789	1.5798	0.0014578	0.65722	0.00060646	2.2371	0.0020643	923.102021867389	12.414	0.11526	12.414	12.387	12.502	0	444	40	1.02770517576159	0.0261684967549374	1.02770517576159	620.506764704955	0	15.7999878190409						440	14	6	NaN	NaN	NaN	1.6845E-13	1	37803	105.19	100.33	1	120170			1920	1447;1448	1626	1655	1920	1920	520	
AYHEQLTVAEITNACFEPANQMVK	24	Unmodified	_AYHEQLTVAEITNACFEPANQMVK_			0	0	0	Q9BQE3	Q9BQE3	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	922.107155	2763.29964	2.3397	0.0021575	-0.18835	-0.00017368	2.1514	0.0019838	922.441652229542	13.832	0.27486	13.832	13.779	14.054	0	453	76	1.02166545906632	0.0503657802476892	1.02166545906632	616.862324174907	0	30.4099076530056						1532	32	7	NaN	NaN	NaN	5.7225E-33	1	37799	199.91	187.45	1	611830			1921	2696	1627	1656	1921	1921		
AYHEQLTVAEITNACFEPANQMVK	24	Oxidation (M)	_AYHEQLTVAEITNACFEPANQM(Oxidation (M))VK_	AYHEQLTVAEITNACFEPANQM(1)VK	AYHEQLTVAEITNACFEPANQM(57)VK	0	1	0	Q9BQE3	Q9BQE3	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	927.438793	2779.29455	1.0899	0.0010108	-0.39591	-0.00036718	0.69401	0.00064365	927.772915654585	12.538	0.10639	12.538	12.502	12.609	0	453	34	1.02166545906632	0.0221486894009117	1.02166545906632	616.844549085879	0	13.3725753426511						362	13	5	NaN	NaN	NaN	1.4888E-06	1	37836	57.476	56.05	1	66953			1922	2696	1627	1657	1922	1922	622	
AYHMVCLDPDMEK	13	Unmodified	_AYHMVCLDPDMEK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.846387	1607.67822	1.9581	0.001576	0.86291	0.00069451	2.8211	0.0022705	804.847436591993	9.0262	0.062074	9.0262	8.9996	9.0617	0	366	31	1.07994477139643	0.0200589169906749	1.07994477139643	436.263031618645	0	8.10315876248285						113	8	3	NaN	NaN	NaN	0.00096524	1	21836	67.548	65.246	1	20193			1923	1776	1628	1658	1923	1923		
AYHSFLVEPISCHAWNK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))AYHSFLVEPISCHAWNK_			1	0	0	O15143	O15143	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.00352	2099.98873	1.031	0.00072276	0.0066716	4.6768E-06	1.0377	0.00072744	701.338124169386	13.779	0.11525	13.779	13.726	13.841	1.7764E-15	564	88	0.946969335010767	0.0586672053258371	0.946969335010767	572.665458593631	0	35.4781097974469						885	14	5	NaN	NaN	NaN	4.0947E-14	1	33309	152.23	147.92	1	307580			1924	147	1629	1659	1924	1924		
AYIATQGPLAESTEDFWR	18	Unmodified	_AYIATQGPLAESTEDFWR_			0	0	0	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.99454	2053.97452	1.4833	0.0015248	2.3913	0.0024582	3.8745	0.003983	1027.996907103	15.757	0.18622	15.757	15.659	15.845	0	183	34	1.20177511391933	0.0218759356051808	1.20177511391933	484.576431692001	0	8.82075414335299						420	22	4	NaN	NaN	NaN	8.4618E-06	1	32592	57.042	53.754	1	81399			1925	627	1630	1660	1925	1925		
AYILNLVK	8	Unmodified	_AYILNLVK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.292028	932.569503	-0.91707	-0.00042854	-1.8759	-0.0008766	-2.793	-0.0013051	467.291163318133	12.307	0.088685	12.307	12.263	12.352	0	732	52	0.833184998970724	0.0346785357813113	0.833184998970724	338.653056018014	0	14.0952995254104						400	11	4	NaN	NaN	NaN	0.0081361	1	2926	69.093	34.016	1	260350			1926	1175	1631	1661	1926	1926		
AYIVQLQIEDLTR	13	Unmodified	_AYIVQLQIEDLTR_			0	0	0	Q15637	Q15637	Q15637	SF1	Splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.432855	1560.85116	1.2537	0.00097971	-1.5558	-0.0012158	-0.3021	-0.00023607	781.432915038673	16.014	0.16847	16.014	15.961	16.129	0	381	55	1.06991323971056	0.0361409246465043	1.06991323971056	432.321366491751	0	14.6035148921785						611	20	4	NaN	NaN	NaN	1.8301E-07	1	20371	130.79	102.69	1	208130			1927	1858	1632	1662	1927	1927		
AYLAYCTPGSDGQAATLK	18	Unmodified	_AYLAYCTPGSDGQAATLK_			0	0	0	Q9H0J9	Q9H0J9	Q9H0J9	PARP12	Poly [ADP-ribose] polymerase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.951283	1885.88801	1.239	0.0011695	-0.55107	-0.00052019	0.68792	0.00064936	944.451774665254	9.4164	0.06209	9.4164	9.381	9.443	0	225	22	1.17390432875292	0.013951670583596	1.17390432875292	473.621621006265	0	5.62891938951088						89	8	3	NaN	NaN	NaN	0.044013	1	29281	22.395	21.026	1	14784			1928	2847	1633	1663	1928	1928		
AYLDQTVVPILLQGLAVLAK	20	Unmodified	_AYLDQTVVPILLQGLAVLAK_			0	0	0	Q9C005	Q9C005	Q9C005	DPY30	Protein dpy-30 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.092552	2124.25583	0.35108	0.00024895	2.1559	0.0015287	2.507	0.0017777	709.428163940284	20.279	0.017725	20.279	20.279	20.297	0	444	37	1.02770517576159	0.0241605388886725	1.02770517576159	621.44263442186	0	14.6096266615589						84	3	5	NaN	NaN	NaN	8.5277E-06	1	33675	126.17	125.81	1	23581			1929	2817	1634	1664	1929	1929		
AYLEGTCVEWLR	12	Unmodified	_AYLEGTCVEWLR_			0	0	0	P10321	P10321	P10321	HLA-C	HLA class I histocompatibility antigen, Cw-7 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.863751	1495.71295	1.5614	0.0011693	1.0868	0.00081384	2.6481	0.0019831	748.864913326712	13.762	0.22167	13.762	13.708	13.93	0	408	49	1.0518390438467	0.0321562992894993	1.0518390438467	425.180804748136	0	12.998415764859						699	26	5	NaN	NaN	NaN	0.0026615	1	18410	72.365	58.37	1	413620			1930	624	1635	1665	1930	1930		
AYLESEVAISEELVQK	16	Unmodified	_AYLESEVAISEELVQK_			0	0	0	Q9NQC3	Q9NQC3	Q9NQC3	RTN4	Reticulon-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.315647	1806.92511	-0.3476	-0.00020971	-0.66998	-0.00040421	-1.0176	-0.00061392	603.315099621319	14.648	0.13301	14.648	14.613	14.746	0	639	22	0.896281965493857	0.014218057439808	0.896281965493857	542.589567861089	0	8.60730209810561						203	16	3	NaN	NaN	NaN	0.063103	1	27398	28.328	27.521	1	42353			1931	2999	1636	1666	1931	1931		
AYLESEVAISEELVQK	16	Unmodified	_AYLESEVAISEELVQK_			0	0	0	Q9NQC3	Q9NQC3	Q9NQC3	RTN4	Reticulon-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.469832	1806.92511	1.581	0.00143	1.2002	0.0010856	2.7813	0.0025156	904.471737800639	14.648	0.26603	14.648	14.56	14.826	0	261	67	1.14997238118939	0.0439054229632809	1.14997238118939	464.114107144692	0	17.7196657160911						811	31	4	NaN	NaN	NaN	2.0664E-06	1	27399	119.43	111.87	1	197450			1932	2999	1636	1666	1932	1932		
AYLFAHAVDFVPSEENNLVGTLK	23	Unmodified	_AYLFAHAVDFVPSEENNLVGTLK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	845.435706	2533.28529	-0.084257	-7.1234E-05	0.67301	0.00056899	0.58875	0.00049775	845.77090578834	17.034	0.079801	17.034	16.989	17.069	0	480	40	1.00353128488872	0.0262082910405103	1.00353128488872	606.188622775899	0	15.831263150823						251	10	4	NaN	NaN	NaN	0.014338	1	36970	42.218	40.792	1	47807			1933	1923	1637	1667	1933	1933		
AYLLQNFNEEGTTEK	15	Unmodified	_AYLLQNFNEEGTTEK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.923049	1755.83154	2.7502	0.0024172	-0.27549	-0.00024213	2.4747	0.0021751	878.922282718334	11.101	0.15071	11.101	11.048	11.199	0	306	46	1.12000185836644	0.0300117972178613	1.12000185836644	452.118562042769	0	12.115060793068						442	18	4	NaN	NaN	NaN	6.9249E-12	1	26045	128.97	109.42	1	115160			1934	1991	1638	1668	1934	1934		
AYLNQTVTEFK	11	Unmodified	_AYLNQTVTEFK_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.340435	1312.66632	0.57777	0.00037979	-0.33236	-0.00021847	0.24541	0.00016132	657.339642186675	9.5228	0.11526	9.5228	9.4785	9.5938	0	510	28	0.983355730988811	0.0181692995022645	0.983355730988811	398.005821908021	0	7.35388705633528						128	14	2	NaN	NaN	NaN	0.039666	1	12733	39.039	27.679	1	35569			1935	2572	1639	1669	1935	1935		
AYLPVNESFGFTADLR	16	Unmodified	_AYLPVNESFGFTADLR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.636943	1798.889	-0.29635	-0.000178	-1.1182	-0.00067163	-1.4146	-0.00084963	600.970627128348	16.333	0.14189	16.333	16.289	16.431	0	594	58	0.926715457081489	0.0385117135892644	0.926715457081489	561.032409135233	0	23.3149445062198						704	17	4	NaN	NaN	NaN	6.0397E-05	1	27186	77.157	69.6	1	243460			1936	679	1640	1670	1936	1936		
AYLPVNESFGFTADLR	16	Unmodified	_AYLPVNESFGFTADLR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.451776	1798.889	1.6007	0.0014414	1.8024	0.0016229	3.4031	0.0030643	900.954960099427	16.333	0.37243	16.333	16.227	16.599	0	279	91	1.13799159301878	0.0599122416121536	1.13799159301878	459.294439049348	0	24.1806350523618						2724	43	6	NaN	NaN	NaN	1.8461E-24	1	27187	194.83	167.45	1	2151100			1937	679	1640	1670	1937	1937		
AYMCPFMQFIEGGR	14	Unmodified	_AYMCPFMQFIEGGR_			0	0	0	P53992;O94855	P53992;O94855	P53992	SEC24C;SEC24D	Protein transport protein Sec24C;Protein transport protein Sec24D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.878021	1705.74149	1.3387	0.0011431	0.85505	0.00073011	2.1938	0.0018732	853.879297281343	18.408	0.11526	18.408	18.355	18.47	0	375	40	1.07392668217569	0.0260747970563766	1.07392668217569	433.618804584491	0	10.5282069223414						318	14	4	NaN	NaN	NaN	1.4332E-05	1	24643	73.655	71.354	1	65428			1938	1247;390	1641	1671	1938	1938		
AYMHGFFMDIR	11	Unmodified	_AYMHGFFMDIR_			0	0	0	Q9BSC4	Q9BSC4	Q9BSC4	NOL10	Nucleolar protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.214376	1386.6213	-1.3057	-0.00060481	-1.1692	-0.00054161	-2.4749	-0.0011464	463.213707644355	12.919	0.079812	12.919	12.875	12.955	0	786	22	0.796423123669906	0.0143131971978526	0.796423123669906	483.247224327201	0	8.68484680007469						129	10	3	NaN	NaN	NaN	0.027005	1	15034	47.561	43.953	1	27732			1939	2721	1642	1672	1939	1939		
AYNYVAQEVDDYHAFQTLTHIYNK	24	Unmodified	_AYNYVAQEVDDYHAFQTLTHIYNK_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	726.596332	2902.35622	0.55716	0.00040483	0.82987	0.00060298	1.387	0.0010078	726.847823588798	15.748	0.088696	15.748	15.704	15.792	0	528	25	0.971237000454584	0.0161650151283204	0.971237000454584	781.697195330138	0	13.0103640845261						209	11	5	NaN	NaN	NaN	0.021071	1	38078	22.299	21.652	1	45634			1940	3121	1643	1673	1940	1940		
AYPDVAALSDGYWVVSNR	18	Unmodified	_AYPDVAALSDGYWVVSNR_			0	0	0	O14773	O14773	O14773	TPP1	Tripeptidyl-peptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.983972	1981.95339	0.90945	0.00090216	2.5321	0.0025118	3.4416	0.003414	991.98625390024	16.386	0.097543	16.386	16.324	16.422	0	174	52	1.20774045859593	0.0337989921039494	1.20774045859593	487.100562371031	0	13.6316606305858						299	12	3	NaN	NaN	NaN	0.0027167	1	31314	58.508	57.329	1	59588			1941	118	1644	1674	1941	1941		
AYPLADAHLTK	11	Unmodified	_AYPLADAHLTK_			0	0	0	P55769	P55769	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.324588	1198.63462	1.5523	0.0009319	0.62926	0.00037776	2.1816	0.0013097	600.324958575885	6.6047	0.35471	6.6047	6.4451	6.7998	0	513	49	0.981336640919867	0.032312153640667	0.981336640919867	397.581929733379	0	13.0910513911472						898	41	4	NaN	NaN	NaN	0.021894	1	9427	46.033	33.966	1	472200			1942	1276	1645	1675	1942	1942		
AYPYMEGEPEDDVYLK	16	Unmodified	_AYPYMEGEPEDDVYLK_			0	0	0	Q9BYD6	Q9BYD6	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.9244	1917.83425	1.4616	0.0014031	0.23697	0.00022747	1.6986	0.0016305	960.426076266801	12.103	0.21282	12.103	12.015	12.227	0	174	34	1.20774045859593	0.02187293336483	1.20774045859593	487.213810353645	0	8.8237461388677						607	25	4	NaN	NaN	NaN	0.00013189	1	30003	61.194	58.109	1	132030			1943	2800	1646	1676	1943	1943		
AYQCVVLLQGK	11	Unmodified	_AYQCVVLLQGK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.847373	1277.68019	1.4446	0.00092433	-1.2573	-0.00080448	0.18732	0.00011985	639.846523875064	9.5849	0.133	9.5849	9.514	9.647	0	519	94	0.97729762293174	0.062514029851674	0.97729762293174	395.666647795761	0	25.3092978548497						518	16	3	NaN	NaN	NaN	0.0005734	1	11701	94.806	87.656	1	185870			1944	1250	1647	1677	1944	1944		
AYSAAQATMPQR	12	Unmodified	_AYSAAQATMPQR_			0	0	0		REV__Q96PK6	REV__Q96PK6			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.814061	1293.61357	2.2038	0.0014276	4.8176	0.0031209	7.0214	0.0045485	647.817332723366	7.3142	0.30148	7.3142	7.2166	7.5181	0	558	73	0.951016745717027	0.0485622378151689	0.951016745717027	384.975883508456	0	19.658213687864						1063	35	4	NaN	NaN	NaN	0.0071071	1	12177	49.96	16.565	1	905660	+		1945	3511	1648	1678	1945	1945		
AYSDMCELTEEVSEK	15	Unmodified	_AYSDMCELTEEVSEK_			0	0	0	Q96TC7	Q96TC7	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.876592	1789.73863	2.1806	0.0019536	4.674	0.0041874	6.8547	0.0061409	896.38429794777	11.465	0.14189	11.465	11.42	11.562	0	294	163	1.12800004657306	0.107634931837477	1.12800004657306	455.279637280412	0	43.4432541687791						718	17	5	NaN	NaN	NaN	4.0214E-06	1	26955	104.04	100.54	1	200950			1946	2635	1649	1679	1946	1946		
AYSDPSTGEPATYGELQQR	19	Unmodified	_AYSDPSTGEPATYGELQQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.47417	2068.93378	3.5395	0.003665	-2.0164	-0.002088	1.5231	0.0015771	1035.9735488722	7.7309	0.15973	7.7309	7.6777	7.8374	-8.8818E-16	219	67	1.17788915118882	0.0438330716133242	1.17788915118882	474.922155431379	0	17.6733921258783						939	19	5	NaN	NaN	NaN	1.2184E-26	1	32855	180.49	163.22	1	284550			1947	1816	1650	1680	1947	1947		
AYSDQAIVNLLK	12	Unmodified	_AYSDQAIVNLLK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.86936	1333.72417	0.92853	0.00062014	-1.0016	-0.00066895	-0.073082	-4.8809E-05	667.869069431394	14.657	0.16846	14.657	14.56	14.728	1.7764E-15	486	103	0.999498404980629	0.0685117005933107	0.999498404980629	404.472915684161	0	27.7250340364412						832	20	3	NaN	NaN	NaN	0.0064277	1	13404	60.547	40.314	1	215930			1948	2420	1651	1681	1948	1948		
AYSEAHEISK	10	Unmodified	_AYSEAHEISK_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.774928	1133.5353	2.1699	0.001232	-0.86632	-0.00049188	1.3036	0.00074016	567.774527254716	2.2862	0.42566	2.2862	2.2419	2.6676	0	660	34	0.882057989648486	0.0223643734856528	0.882057989648486	357.593332584962	0	9.06669509234467						663	49	4	NaN	NaN	NaN	1.2957E-07	1	7622	158.37	114.63	1	140430			1949	1361	1652	1682	1949	1949		
AYSNWPTYPQLYVK	14	Unmodified	_AYSNWPTYPQLYVK_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.432855	1728.85116	2.097	0.0018148	-0.79887	-0.00069137	1.2981	0.0011234	865.431418448645	14.01	0.24829	14.01	13.895	14.143	0	219	46	1.17788915118882	0.0298759142347758	1.17788915118882	475.544438540167	0	12.0616824140976						973	29	7	NaN	NaN	NaN	5.3479E-05	1	25297	106	95.753	1	479080			1950	377	1653	1683	1950	1950		
AYTIDPSNPMVLNHLANHFFFK	22	Unmodified	_AYTIDPSNPMVLNHLANHFFFK_			0	0	0	Q6PD62	Q6PD62	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	644.824326	2575.2682	-0.52662	-0.00033958	-0.27779	-0.00017913	-0.80441	-0.0005187	645.326324182795	16.856	0.097552	16.856	16.803	16.901	0	606	31	0.918606045818476	0.0202819613609688	0.918606045818476	739.784727984505	0	16.3337541013545						231	12	4	NaN	NaN	NaN	0.00079928	1	37140	16.102	15.797	1	46093			1951	2071	1654	1684	1951	1951		
AYTNFDAER	9	Unmodified	_AYTNFDAER_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.74617	1085.47779	2.0089	0.0010923	0.98849	0.00053749	2.9974	0.0016298	543.746602100439	5.1504	0.25718	5.1504	5.0883	5.3455	0	645	49	0.892219381832517	0.0325096976674552	0.892219381832517	361.905200099316	0	13.1866992346028						697	30	4	NaN	NaN	NaN	8.05E-06	1	6342	141.93	127.39	1	898570			1952	558	1655	1685	1952	1952		
AYTNFDAERDALNIETAIK	19	Unmodified	_AYTNFDAERDALNIETAIK_			0	0	1	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.027047	2154.05931	1.4437	0.001038	-0.20217	-0.00014537	1.2415	0.00089267	719.361440387311	13.921	0.070942	13.921	13.877	13.948	0	537	37	0.965173861991602	0.0242508800099599	0.965173861991602	583.578201228842	0	14.6629384525874						263	9	4	NaN	NaN	NaN	0.01754	1	34094	33.456	23.545	1	61810			1953	558	1656	1686	1953	1953		
AYTPPEDLQSR	11	Unmodified	_AYTPPEDLQSR_			0	0	0	Q8N5N7	Q8N5N7	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.812042	1275.60953	1.8702	0.0011947	-0.39005	-0.00024917	1.4801	0.00094552	638.811825445526	5.7091	0.19507	5.7091	5.6825	5.8775	0	579	40	0.936845902828289	0.0263282200540531	0.936845902828289	379.296030591443	0	10.6593723993375						271	23	3	NaN	NaN	NaN	0.0033256	1	11640	43.168	36.018	1	53813			1954	2261	1657	1687	1954	1954		
AYVDDTPAEQMK	12	Unmodified	_AYVDDTPAEQMK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.311017	1366.60748	2.6167	0.0017907	-0.46	-0.00031478	2.1567	0.0014759	684.31086360109	6.0461	0.29257	6.0461	5.9663	6.2589	0	480	55	1.00353128488872	0.0362959330386661	1.00353128488872	406.00469578074	0	14.6844642248257						993	34	5	NaN	NaN	NaN	0.0069602	1	14386	70.389	52.053	1	566900			1955	565	1658	1688	1955	1955		
AYVDDTPAEQMK	12	Oxidation (M)	_AYVDDTPAEQM(Oxidation (M))K_	AYVDDTPAEQM(1)K	AYVDDTPAEQM(97)K	0	1	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.308474	1382.6024	2.5632	0.0017745	-0.52335	-0.00036232	2.0398	0.0014122	692.308898922897	4.042	0.15076	4.042	3.9888	4.1396	0	501	31	0.98941132619024	0.0201839240087274	0.98941132619024	400.245721792998	0	8.16498560269645						324	18	4	NaN	NaN	NaN	0.00083676	1	14895	97.277	83.283	1	70262			1956	565	1658	1689	1956	1956	141	
AYVEANQMLGDLIK	14	Unmodified	_AYVEANQMLGDLIK_			0	0	0	P11498	P11498	P11498	PC	Pyruvate carboxylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.905616	1563.79668	1.7962	0.0014063	-0.70003	-0.00054806	1.0962	0.00085821	782.905109657582	15.571	0.097591	15.571	15.535	15.633	0	366	31	1.07994477139643	0.0200589169906749	1.07994477139643	436.367591049588	0	8.10510085156142						226	12	4	NaN	NaN	NaN	0.00016413	1	20468	62.705	44.974	1	55717			1957	655	1659	1690	1957	1957		
AYVESICSNNFDSFLHETHENK	22	Unmodified	_AYVESICSNNFDSFLHETHENK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	881.05897	2640.15508	1.2545	0.0011053	1.1096	0.00097766	2.3641	0.002083	881.394025808211	12.13	0.062074	12.13	12.103	12.165	0	462	28	1.01562323939346	0.0181291645901349	1.01562323939346	613.357330208449	0	10.9486033408958						149	8	4	NaN	NaN	NaN	3.8259E-06	1	37394	61.503	60.751	1	27035			1958	2129	1660	1691	1958	1958		
AYVHEFK	7	Unmodified	_AYVHEFK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.229428	892.444303	0.69974	0.00031295	-0.92092	-0.00041186	-0.22117	-9.8915E-05	447.229168194888	3.1996	0.14187	3.1996	3.173	3.3149	-4.4409E-16	735	31	0.831145085810763	0.020400551942483	0.831145085810763	338.04435973085	0	8.29733777806729						176	17	3	NaN	NaN	NaN	0.0037401	1	2210	100.67	43.78	1	44781			1959	2892	1661	1692	1959	1959		
AYVVLGQFLVLK	12	Unmodified	_AYVVLGQFLVLK_			0	0	0	O75531	O75531	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.413206	1348.81186	1.1423	0.00077154	-0.64238	-0.00043387	0.49995	0.00033767	675.412645352931	18.319	0.12412	18.319	18.284	18.408	0	423	67	1.04178812298108	0.0442698808649449	1.04178812298108	421.538178291854	0	17.9128985264361						537	15	4	NaN	NaN	NaN	4.4389E-05	1	13869	99.305	90.328	1	181380			1960	342	1662	1693	1960	1960		
CADYVVTGAWSAK	13	Unmodified	_CADYVVTGAWSAK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.334827	1426.6551	2.3553	0.0016824	-3.9169	-0.002798	-1.5616	-0.0011155	714.335351932408	9.8332	0.15075	9.8332	9.7534	9.9041	0	486	43	0.999498404980629	0.0282301658273657	0.999498404980629	404.202615909703	0	11.4164333010688						519	18	5	NaN	NaN	NaN	0.0039947	1	16273	48.822	46.686	1	143210			1961	3450	1663	1694	1961	1961		
CAEGYALYAQALTDQQQFGK	20	Unmodified	_CAEGYALYAQALTDQQQFGK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1131.52842	2261.04228	0.77831	0.00088068	0.0075679	8.5633E-06	0.78588	0.00088924	1131.53026848125	14.48	0.062075	14.48	14.462	14.524	0	63	31	1.28111162701928	0.0197852478439124	1.28111162701928	516.248517946395	0	7.97284534868106						110	8	3	NaN	NaN	NaN	9.5528E-11	1	35284	80.128	79.763	1	19001			1962	389	1664	1695	1962	1962		
CALDFFR	7	Unmodified	_CALDFFR_			0	0	0	P51970	P51970	P51970	NDUFA8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.720913	927.427273	-0.69001	-0.00032066	-1.1146	-0.00051799	-1.8046	-0.00083865	464.720332934658	12.813	0.1419	12.813	12.76	12.901	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	334.533152713165	0	8.29720756459403						282	17	3	NaN	NaN	NaN	0.018372	1	2816	84.064	66.369	1	88619			1963	1203	1665	1696	1963	1963		
CALGWDHQEK	10	Unmodified	_CALGWDHQEK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.279854	1242.54516	2.4446	0.0015212	-0.37564	-0.00023375	2.0689	0.0012874	622.279737732695	4.4145	0.24829	4.4145	4.3347	4.5829	0	552	52	0.955063035883597	0.034395858934352	0.955063035883597	386.781697437885	0	13.9296446450307						422	29	4	NaN	NaN	NaN	0.0015496	1	10689	79.059	57.784	1	108050			1964	1742	1666	1697	1964	1964		
CAQAQTGIDLSGCTK	15	Unmodified	_CAQAQTGIDLSGCTK_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.369072	1608.72359	2.4251	0.0019531	-0.16207	-0.00013052	2.263	0.0018226	805.367787330445	6.2678	0.14193	6.2678	6.1879	6.3299	-8.8818E-16	414	49	1.04781950764076	0.0321474274065014	1.04781950764076	423.28311016661	0	12.9864570732391						372	17	4	NaN	NaN	NaN	3.9974E-08	1	21862	91.939	76.964	1	85091			1965	2237	1667	1698	1965	1965		
CCLFPFGLHCTGMPIK	16	Unmodified	_CCLFPFGLHCTGMPIK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.634617	1936.88202	0.57582	0.00037235	-0.41517	-0.00026846	0.16065	0.00010388	646.634586902358	14.976	0.13304	14.976	14.914	15.047	0	564	25	0.946969335010767	0.0161918857668037	0.946969335010767	572.981848416569	0	9.79720915240375						305	16	5	NaN	NaN	NaN	0.0004876	1	30450	51.454	41.203	1	63026			1966	3161	1668	1699	1966	1966		
CCLTYCFNKPEDK	13	Unmodified	_CCLTYCFNKPEDK_			0	0	1	P62979	P62979	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.914326	1733.72115	0.057796	3.3459E-05	1.0177	0.00058916	1.0755	0.00062262	579.249330264913	6.9328	0.070923	6.9328	6.9062	6.9771	0	669	25	0.875957769340875	0.0162729009073457	0.875957769340875	530.456045001854	0	9.8544233045767						140	9	4	NaN	NaN	NaN	6.7024E-05	1	25424	77.358	74.48	1	29053			1967	1419	1669	1700	1967	1967		
CCSGAIIVLTK	11	Unmodified	_CCSGAIIVLTK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.320134	1220.62571	1.4097	0.0008618	-1.1901	-0.00072754	0.21961	0.00013425	611.319842716841	9.2036	0.31925	9.2036	9.1326	9.4519	0	582	52	0.934820374997243	0.0344292157937285	0.934820374997243	378.658519394797	0	13.9459047160965						1013	37	5	NaN	NaN	NaN	1.0435E-07	1	10035	163.43	149.43	1	827560			1968	699	1670	1701	1968	1968		
CDAIVDLIHDIQIVSTTR	18	Unmodified	_CDAIVDLIHDIQIVSTTR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.361373	2068.06229	-0.91086	-0.00062882	-0.21999	-0.00015187	-1.1308	-0.00078069	690.695346044952	20.031	0.017739	20.031	20.031	20.049	0	633	22	0.900343422309015	0.0142141138880033	0.900343422309015	544.524303642236	0	8.59664243106999						41	3	3	NaN	NaN	NaN	0.0012045	1	32847	28.432	25.717	1	8029.9			1969	2354	1671	1702	1969	1969		
CDENILWLDYK	11	Unmodified	_CDENILWLDYK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.842484	1467.67042	0.59987	0.00044081	2.1149	0.0015541	2.7148	0.0019949	734.844460773461	14.826	0.33696	14.826	14.719	15.056	0	447	70	1.02569221487577	0.0462789558811585	1.02569221487577	414.68418892049	0	18.7104386728622						1525	39	5	NaN	NaN	NaN	4.7437E-23	1	17504	241.63	220.54	1	1402600			1970	699	1672	1703	1970	1970		
CDEPILSNR	9	Unmodified	_CDEPILSNR_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.26113	1102.50771	0.84317	0.00046565	2.5505	0.0014085	3.3936	0.0018742	552.262709891604	5.2568	0.27496	5.2568	5.1504	5.4254	0	630	58	0.902373728295776	0.0385972383107155	0.902373728295776	365.953166646259	0	15.6529175669627						958	32	3	NaN	NaN	NaN	0.001557	1	6776	86.205	55.644	1	430870			1971	903	1673	1704	1971	1971		
CDFPIMK	7	Unmodified	_CDFPIMK_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.711699	909.408845	0.018194	8.2911E-06	-0.49209	-0.00022425	-0.4739	-0.00021596	455.711705540838	8.831	0.19516	8.831	8.769	8.9642	0	687	52	0.863749705078866	0.034615952502899	0.863749705078866	351.206048249613	0	14.0750634280441						478	23	3	NaN	NaN	NaN	0.0095125	1	2491	76.833	65.184	1	146320			1972	1545	1674	1705	1972	1972		
CDFTEDQTAEFK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))CDFTEDQTAEFK_			1	0	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.814121	1531.61369	2.1558	0.0016531	0.37265	0.00028575	2.5284	0.0019388	766.814527415028	11.376	0.24833	11.376	11.323	11.571	0	393	58	1.0618830335572	0.0381777082454866	1.0618830335572	429.148596302478	0	15.4291097850125						677	29	4	NaN	NaN	NaN	6.6629E-06	1	19475	133.76	127.07	1	236690			1973	1309	1675	1706	1973	1973		
CDFTGTLIVVPDVSK	15	Unmodified	_CDFTGTLIVVPDVSK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.924006	1649.83346	2.0729	0.0017121	-1.5281	-0.0012621	0.54487	0.00045002	826.424093770541	15.375	0.22178	15.375	15.304	15.526	0	357	43	1.08596037261705	0.0280631418672823	1.08596037261705	438.597389098815	0	11.3341343416037						492	26	4	NaN	NaN	NaN	2.6191E-06	1	23043	114.93	106.46	1	99038			1974	1757	1676	1707	1974	1974		
CDFTQMSQYFK	11	Unmodified	_CDFTQMSQYFK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.807587	1453.60062	0.94334	0.00068657	1.6677	0.0012137	2.611	0.0019003	727.808864544961	13.655	0.11527	13.655	13.62	13.735	0	450	31	1.02367897599655	0.020133781351245	1.02367897599655	413.907655159416	0	8.14076133631011						296	14	4	NaN	NaN	NaN	1.5342E-07	1	17066	136.84	123.57	1	95666			1975	651	1677	1708	1975	1975		
CDLISIPK	8	Unmodified	_CDLISIPK_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.257328	944.500103	-0.18405	-8.7102E-05	-1.8222	-0.00086235	-2.0062	-0.00094945	473.256637916093	10.09	0.25711	10.09	9.9662	10.223	0	738	73	0.829104889055312	0.0489273390370114	0.829104889055312	336.932856125779	0	19.883163520068						572	30	2	NaN	NaN	NaN	0.053079	1	3143	26.456	12.809	1	296710			1976	3280	1678	1709	1976	1976		
CDPAGYYCGFK	11	Unmodified	_CDPAGYYCGFK_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.268098	1336.52164	1.3894	0.00092987	-0.15562	-0.00010415	1.2338	0.00082572	669.268137135805	8.2011	0.09752	8.2011	8.1479	8.2454	0	537	28	0.965173861991602	0.0181944515400058	0.965173861991602	390.574212934088	0	7.36269792402135						241	12	4	NaN	NaN	NaN	0.0036397	1	13477	55.235	52.756	1	57383			1977	1314	1679	1710	1977	1977		
CDPVFDFGTGPR	12	Unmodified	_CDPVFDFGTGPR_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.306069	1366.59759	0.62216	0.00042574	0.5591	0.0003826	1.1813	0.00080834	684.306742839733	12.148	0.10642	12.148	12.112	12.219	0	528	28	0.971237000454584	0.0181843844613631	0.971237000454584	392.939227110313	0	7.35696639685307						213	13	3	NaN	NaN	NaN	0.012173	1	14385	40.533	35.382	1	46136			1978	2796	1680	1711	1978	1978		
CDTYATEFDLEAEEYVPLPK	20	Unmodified	_CDTYATEFDLEAEEYVPLPK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1195.54086	2389.06716	0.41209	0.00049267	1.3869	0.001658	1.7989	0.0021507	1196.04310943107	17.708	0.097514	17.708	17.646	17.743	0	72	22	1.27517645957152	0.0138506207304603	1.27517645957152	513.688591437647	0	5.57954610921689						144	12	3	NaN	NaN	NaN	0.0058026	1	36291	39.166	38.801	1	24437			1979	3331	1681	1712	1979	1979		
CDVTDNQSEVADK	13	Unmodified	_CDVTDNQSEVADK_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.814652	1479.61475	2.1463	0.00159	-0.94763	-0.00070202	1.1986	0.00088797	740.81392740539	3.3415	0.14186	3.3415	3.3149	3.4567	0	489	31	0.997481546940468	0.0201727650206149	0.997481546940468	403.248308941663	0	8.15517179860774						267	17	4	NaN	NaN	NaN	1.3421E-11	1	17883	174.23	167.48	1	55354			1980	2239	1682	1713	1980	1980		
CDYMDEVTYGELEK	14	Unmodified	_CDYMDEVTYGELEK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.360578	1750.7066	2.3044	0.0020195	1.0682	0.00093611	3.3726	0.0029556	876.361401445085	12.298	0.10642	12.298	12.263	12.369	0	324	37	1.1079963157843	0.0240210084150783	1.1079963157843	447.282457758604	0	9.69694170339466						337	13	4	NaN	NaN	NaN	1.1563E-07	1	25901	119.55	118.67	1	105960			1981	1919	1683	1714	1981	1981		
CEAFGWHAIIVDGHSVEELCK	21	Unmodified	_CEAFGWHAIIVDGHSVEELCK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	615.038602	2456.1253	0.61176	0.00037626	1.2715	0.00078203	1.8833	0.0011583	615.28999550854	13.38	0.1508	13.38	13.327	13.478	0	558	34	0.951016745717027	0.0222623031474618	0.951016745717027	766.085392444125	0	17.933254404027						363	18	5	NaN	NaN	NaN	9.5811E-08	1	36597	69.224	60.46	1	97201			1982	888	1684	1715	1982	1982		
CEELSGLHGQLQEAR	15	Unmodified	_CEELSGLHGQLQEAR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.912492	1725.81043	2.5021	0.0021616	-0.95365	-0.00082387	1.5485	0.0013378	864.413622714279	6.6668	0.088669	6.6668	6.6313	6.72	0	315	31	1.11400032671325	0.020009239153943	1.11400032671325	449.757164537883	0	8.07836268144501						137	11	3	NaN	NaN	NaN	0.0070278	1	25209	45.183	44.445	1	25223			1983	3158	1685	1716	1983	1983		
CEFAVGYQR	9	Unmodified	_CEFAVGYQR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.258391	1128.50223	1.1488	0.00064939	1.921	0.0010859	3.0699	0.0017353	565.258770767378	6.7732	0.09754	6.7732	6.7377	6.8353	0	612	25	0.914549654013882	0.0162300673431094	0.914549654013882	370.785569206207	0	6.58015093183622						225	12	4	NaN	NaN	NaN	0.0047318	1	7479	65.313	60.773	1	48565			1984	3161	1686	1717	1984	1984		
CEFEEVQGFLDQVAHK	16	Unmodified	_CEFEEVQGFLDQVAHK_			0	0	0	Q9NX20	Q9NX20	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.968364	1934.88326	0.13937	9.0028E-05	-1.08	-0.00069762	-0.94059	-0.00060759	646.301779589096	16.014	0.070921	16.014	15.97	16.041	0	597	22	0.924688525662974	0.0141885207468854	0.924688525662974	559.504529924327	0	8.58509802002345						178	9	4	NaN	NaN	NaN	5.7173E-05	1	30415	117.21	115.07	1	41501			1985	3092	1687	1718	1985	1985		
CEGFELHFWR	10	Unmodified	_CEGFELHFWR_			0	0	0	Q9UGI8	Q9UGI8	Q9UGI8	TES	Testin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.87664	1379.60809	-2.1816	-0.0010054	-0.71401	-0.00032907	-2.8956	-0.0013345	460.876542040189	13.354	0.097569	13.354	13.318	13.416	0	771	19	0.806643990516186	0.0122607746712026	0.806643990516186	489.47348617094	0	7.43986714340929						131	12	3	NaN	NaN	NaN	0.0040439	1	14790	45.489	34.787	1	29540			1986	3203	1688	1719	1986	1986		
CELCDVSCTGADAYAAHIR	19	Unmodified	_CELCDVSCTGADAYAAHIR_			0	0	0	Q96KR1	Q96KR1	Q96KR1	ZFR	Zinc finger RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.643446	2167.90851	0.70155	0.00050767	1.7556	0.0012704	2.4571	0.0017781	723.978872999197	9.3898	0.070929	9.3898	9.3632	9.4342	0	453	19	1.02166545906632	0.0120819363681279	1.02166545906632	617.709746783936	0	7.30486656702317						126	9	4	NaN	NaN	NaN	0.001632	1	34275	40.83	38.882	1	23077			1987	2579	1689	1720	1987	1987		
CELLYEGPPDDEAAMGIK	18	Unmodified	_CELLYEGPPDDEAAMGIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.45554	2006.89653	1.9702	0.0019789	0.50309	0.00050533	2.4732	0.0024843	1004.45569273572	13.105	0.31036	13.105	13.034	13.345	0	201	91	1.18983705239708	0.0597477725609368	1.18983705239708	479.838364823138	0	24.0951258239159						2027	36	6	NaN	NaN	NaN	6.3069E-14	1	31746	139.61	123.33	1	1027100			1988	679	1690	1721	1988	1988		
CELLYEGPPDDEAAMGIK	18	Unmodified	_CELLYEGPPDDEAAMGIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.45554	2006.89653	0.91982	0.00092391	1.9918	0.0020007	2.9117	0.0029246	1004.95891691533	17.3	0.20396	17.3	17.202	17.406	0	180	100	1.203763835057	0.0657180511112956	1.203763835057	485.454763045221	0	26.5028238936228						1549	24	4	NaN	NaN	NaN	0.002924	1	31747	31.722	30.452	1	365210			1989	679	1690	1721	1989	1989		
CELLYEGPPDDEAAMGIK	18	Oxidation (M)	_CELLYEGPPDDEAAM(Oxidation (M))GIK_	CELLYEGPPDDEAAM(1)GIK	CELLYEGPPDDEAAM(94)GIK	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.453	2022.89144	2.2027	0.0022301	-0.98952	-0.0010018	1.2132	0.0012283	1012.95393594964	11.252	0.23945	11.252	11.163	11.403	0	228	70	1.17191150690002	0.0458475287495643	1.17191150690002	472.583670880285	0	18.4884211049111						910	28	5	NaN	NaN	NaN	2.9442E-05	1	32029	93.772	86.916	1	215240			1990	679	1690	1722	1990	1990	207	
CEMASTGEVACFGEGIHTAFLK	22	Unmodified	_CEMASTGEVACFGEGIHTAFLK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	805.697439	2414.07049	1.9859	0.0016001	0.12996	0.00010471	2.1159	0.0017048	806.032142979588	14.196	0.21281	14.196	14.107	14.32	0	396	37	1.05987478976334	0.0241039161855134	1.05987478976334	640.395684438569	0	14.5640259135878						677	25	7	NaN	NaN	NaN	4.5009E-38	1	36416	235.02	232.78	1	309600			1991	922	1691	1723	1991	1991		
CEMEQQNQEYK	11	Unmodified	_CEMEQQNQEYK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q61782	Q04695	Q04695	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.800491	1485.58643	2.5298	0.0018817	-2.2895	-0.0017029	0.24033	0.00017875	743.7991662693	2.9424	0.34583	2.9424	2.8981	3.2439	0	510	64	0.983355730988811	0.0424185110568702	0.983355730988811	397.522913913934	0	17.1477417457684						1216	40	5	NaN	NaN	NaN	6.2385E-23	1	18064	220.17	203.52	1	387020		+	1992	36	1692	1724	1992	1992		
CESAFLSK	8	Unmodified	_CESAFLSK_			0	0	0	P83731	P83731	P83731	RPL24	60S ribosomal protein L24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.223485	940.432418	0.48988	0.00023084	0.75039	0.0003536	1.2403	0.00058445	471.223584309022	4.9287	0.1862	4.9287	4.8755	5.0617	0	732	70	0.833184998970724	0.0469115112528784	0.833184998970724	338.611928221655	0	19.0651503576665						488	22	3	NaN	NaN	NaN	0.0041762	1	3066	58.426	52.195	1	220980			1993	1481	1693	1725	1993	1993		
CEYPAACNALETLLIHR	17	Unmodified	_CEYPAACNALETLLIHR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.664398	2029.97137	0.64954	0.00044017	0.63552	0.00043067	1.2851	0.00087084	677.99893882105	15.739	0.16847	15.739	15.65	15.819	0	501	28	0.98941132619024	0.0181642753536437	0.98941132619024	598.467040199181	0	10.9870584867025						411	20	4	NaN	NaN	NaN	0.00085143	1	32150	62.398	60.556	1	107990			1994	1259	1694	1726	1994	1994		
CFIEEIPDETMVIGNYR	17	Unmodified	_CFIEEIPDETMVIGNYR_			0	0	0	Q7Z7H5;Q9BVK6	Q7Z7H5;Q9BVK6	Q7Z7H5	TMED4;TMED9	Transmembrane emp24 domain-containing protein 4;Transmembrane emp24 domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.48463	2084.95471	1.3713	0.001431	3.4181	0.0035667	4.7895	0.0049977	1043.98891588624	16.608	0.22168	16.608	16.502	16.723	0	183	67	1.20177511391933	0.0437669065341655	1.20177511391933	484.528079275697	0	17.645809863443						685	26	3	NaN	NaN	NaN	0.0019318	1	33097	55.578	51.728	1	200880			1995	2153;2766	1695	1727	1995	1995		
CFIVGADNVGSK	12	Unmodified	_CFIVGADNVGSK_			0	0	0	P05388;Q8NHW5	P05388	P05388	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.810987	1265.60742	1.9325	0.0012248	0.84693	0.00053679	2.7794	0.0017616	634.312615320323	8.0858	0.56774	8.0858	7.7398	8.3076	0	558	67	0.951016745717027	0.0444968965895804	0.951016745717027	385.065893255881	0	18.0167566023907						745	65	2	NaN	NaN	NaN	0.00068247	1	11379	78.932	70.749	1	761730			1996	530	1696	1728	1996	1996		
CFLSWLVK	8	Unmodified	_CFLSWLVK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.783513	1051.55247	-1.0438	-0.00054986	-0.75594	-0.00039822	-1.7997	-0.00094808	526.783033405078	16.901	0.12417	16.901	16.856	16.98	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	362.05150424983	0	8.24387352143219						213	15	3	NaN	NaN	NaN	0.00050634	1	5510	97.033	63.22	1	57030			1997	2442	1697	1729	1997	1997		
CFSEENHEPLR	11	Unmodified	_CFSEENHEPLR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.311883	1416.60921	2.2464	0.0015934	0.34726	0.00024631	2.5936	0.0018397	709.311654393846	4.1662	0.088666	4.1662	4.1307	4.2194	0	504	28	0.987393073566096	0.0181667871674303	0.987393073566096	399.334325794354	0	7.3472479193664						144	11	3	NaN	NaN	NaN	0.0066456	1	15983	57.888	56.385	1	26894			1998	2605	1698	1730	1998	1998		
CFSVLGFCK	9	Unmodified	_CFSVLGFCK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.262087	1116.50962	1.3698	0.00076608	-1.7789	-0.00099487	-0.4091	-0.00022879	559.261343524494	12.884	0.16856	12.884	12.822	12.99	0	636	52	0.898312834727904	0.0345152137235557	0.898312834727904	364.249904785058	0	13.9953063414141						406	20	4	NaN	NaN	NaN	0.0013983	1	7167	65.313	41.737	1	128670			1999	674	1699	1731	1999	1999		
CGDLVFAK	8	Unmodified	_CGDLVFAK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.228571	908.442588	-0.61276	-0.00027894	0.56064	0.00025522	-0.052115	-2.3724E-05	455.228818789216	7.1014	0.23064	7.1014	7.0569	7.2875	0	735	49	0.831145085810763	0.032649966211981	0.831145085810763	337.954147700888	0	13.2758909268762						434	27	4	NaN	NaN	NaN	0.01467	1	2477	58.286	48.893	1	118700			2000	1201	1700	1732	2000	2000		
CGEDDETIPSEYR	13	Unmodified	_CGEDDETIPSEYR_			0	0	0	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.819935	1569.62532	1.7044	0.0013393	-0.55158	-0.00043344	1.1528	0.0009059	785.819382418972	6.5515	0.097546	6.5515	6.4983	6.5959	0	456	25	1.01965166402748	0.0161114741282644	1.01965166402748	411.991844193163	0	6.50986623466662						186	12	3	NaN	NaN	NaN	1.7345E-05	1	20648	81.799	78.454	1	45334			2001	785	1701	1733	2001	2001		
CGETAFIAPQCEMIPIEWVCR	21	Unmodified	_CGETAFIAPQCEMIPIEWVCR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.38984	2566.14769	0.20535	0.00017586	-0.81961	-0.00070191	-0.61426	-0.00052605	856.724717790175	18.914	0.0532	18.914	18.896	18.949	0	573	22	0.940896116921038	0.014172805463205	0.940896116921038	568.313797399663	0	8.56056343282432						126	7	4	NaN	NaN	NaN	0.00090244	1	37091	58.794	57.543	1	22547			2002	802	1702	1734	2002	2002		
CGFCHVGEEENEAR	14	Unmodified	_CGFCHVGEEENEAR_			0	0	0	Q8IWS0	Q8IWS0	Q8IWS0	PHF6	PHD finger protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.227961	1692.66205	0.66961	0.00037848	1.6858	0.00095284	2.3554	0.0013313	565.228860475572	4.0598	0.035467	4.0598	4.042	4.0775	0	720	19	0.841341816837976	0.0122318267870473	0.841341816837976	509.591475669722	0	7.40868281808957						51	5	2	NaN	NaN	NaN	0.00032961	1	24266	65.879	64.827	1	11007			2003	2205	1703	1735	2003	2003		
CGFLPGNEK	9	Unmodified	_CGFLPGNEK_			0	0	0	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.242209	1020.46987	-0.25923	-0.00013253	0.98756	0.00050488	0.72832	0.00037235	511.243105196184	6.4008	0.15958	6.4008	6.321	6.4806	-8.8818E-16	729	37	0.835224628594324	0.0244704573832687	0.835224628594324	339.057135528482	0	9.93371471744854						223	19	3	NaN	NaN	NaN	0.021448	1	4739	43.734	37.986	1	46287			2004	3274	1704	1736	2004	2004		
CGNQAAIMELDDTLK	15	Unmodified	_CGNQAAIMELDDTLK_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.89238	1677.77021	3.0228	0.0025388	2.7815	0.0023362	5.8043	0.004875	839.894758073659	12.795	0.23945	12.795	12.724	12.963	0	339	70	1.09798411722691	0.0460878729529839	1.09798411722691	443.392021879928	0	18.6113759317208						801	28	4	NaN	NaN	NaN	1.4858E-06	1	23842	108.24	102.86	1	243300			2005	1439	1705	1737	2005	2005		
CGPLIDLCR	9	Unmodified	_CGPLIDLCR_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.270444	1102.52633	0.52583	0.0002904	0.78849	0.00043546	1.3143	0.00072586	552.271064725105	10.17	0.26602	10.17	10.081	10.347	0	660	88	0.882057989648486	0.0589116082730322	0.882057989648486	357.714153311799	0	23.8913045637988						757	31	4	NaN	NaN	NaN	0.01024	1	6778	53.878	38.296	1	321000			2006	857	1706	1738	2006	2006		
CGQEEHDVLLSNEEDRK	17	Unmodified	_CGQEEHDVLLSNEEDRK_			0	0	1	Q9UGI8	Q9UGI8	Q9UGI8	TES	Testin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.644609	2056.912	1.9334	0.0013276	-0.55496	-0.00038106	1.3785	0.00094653	686.644599012736	4.3169	0.097534	4.3169	4.2549	4.3524	0	561	22	0.948993180460448	0.014164957610621	0.948993180460448	573.968225106814	0	8.56722234245842						114	12	3	NaN	NaN	NaN	0.038796	1	32649	44.16	41.075	1	24222			2007	3203	1707	1739	2007	2007		
CHAEHTPEEEIDHTGAK	17	Unmodified	_CHAEHTPEEEIDHTGAK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.286644	1959.8381	1.9875	0.0013004	0.60258	0.00039426	2.5901	0.0016947	654.621439612821	2.7296	0.097567	2.7296	2.703	2.8006	0	630	34	0.902373728295776	0.0223364666145487	0.902373728295776	545.95297114932	0	13.5139797744569						198	12	3	NaN	NaN	NaN	1.5282E-06	1	30900	128.41	123.02	1	37612			2008	450	1708	1740	2008	2008		
CHEDNVVVAVDSTTNR	16	Unmodified	_CHEDNVVVAVDSTTNR_			0	0	0	Q13144	Q13144	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.947851	1814.82172	0.43171	0.00026159	5.4134	0.0032802	5.8451	0.0035418	606.28612326311	6.0727	0.053203	6.0727	6.0638	6.117	0	630	7	0.902373728295776	0.00406033043774479	0.902373728295776	546.259278648473	0	2.4579540676408						18	7	2	NaN	NaN	NaN	0.061056	1	27594	21.668	20.991	1	2988.7			2009	1633	1709	1741	2009	2009		
CIDLEPDNATTYVHK	15	Unmodified	_CIDLEPDNATTYVHK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.61381	1774.8196	0.32232	0.00019101	0.15563	9.2227E-05	0.47795	0.00028324	592.614225787783	8.7511	0.12419	8.7511	8.6891	8.8133	0	657	28	0.884090832094921	0.0182930452073933	0.884090832094921	535.282969258744	0	11.0757347547594						305	15	4	NaN	NaN	NaN	0.0026808	1	26532	67.548	56.761	1	83283			2010	389	1710	1742	2010	2010		
CIESLIAVFQK	11	Unmodified	_CIESLIAVFQK_			0	0	0	P31949	P31949	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.355031	1306.69551	0.92775	0.00060708	-0.43041	-0.00028164	0.49734	0.00032543	654.355031604798	16.626	0.408	16.626	16.519	16.927	0	477	82	1.0055473068722	0.0544251194474128	1.0055473068722	407.007064984582	0	22.0292053654141						1264	47	5	NaN	NaN	NaN	1.2176E-07	1	12567	154.28	119.35	1	638780			2011	935	1711	1743	2011	2011		
CIIPNHEK	8	Unmodified	_CIIPNHEK_			0	0	0	P35579;P35580;P35749	P35579	P35579	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	337.507777	1009.5015	-0.87714	-0.00029604	0.89298	0.00030139	0.015839	5.3458E-06	337.508129727844	3.1286	0.20394	3.1286	3.0666	3.2705	0	909	22	0.712342960434231	0.0143952206507976	0.712342960434231	433.817385797032	0	8.76669994309157						170	24	2	NaN	NaN	NaN	0.030305	1	4497	46.835	33.188	1	36870			2012	972	1712	1744	2012	2012		
CILPFDK	7	Unmodified	_CILPFDK_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.733489	891.452425	-0.55042	-0.00024589	-1.2077	-0.00053954	-1.7582	-0.00078543	446.732984248257	10.738	0.15075	10.738	10.676	10.826	0	735	76	0.831145085810763	0.0510475277821484	0.831145085810763	338.05005933993	0	20.7624638471857						402	18	3	NaN	NaN	NaN	0.02908	1	2186	66.087	28.479	1	113380			2013	2831	1713	1745	2013	2013		
CIPALDSLTPANEDQK	16	Unmodified	_CIPALDSLTPANEDQK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.430184	1770.84581	2.2448	0.0019899	-1.1042	-0.00097878	1.1406	0.0010111	886.429511777645	11.864	0.3281	11.864	11.74	12.068	0	321	70	1.10999792833052	0.0460497984015082	1.10999792833052	448.050448479215	0	18.5879921931075						1775	38	5	NaN	NaN	NaN	4.822E-07	1	26439	115.05	107.49	1	1157600			2014	635	1714	1746	2014	2014		
CIQCGQYLDDPDLK	14	Unmodified	_CIQCGQYLDDPDLK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.884555	1723.75456	1.9078	0.0016462	1.0214	0.00088137	2.9292	0.0025275	862.885740750792	9.443	0.071003	9.443	9.4164	9.4874	0	294	34	1.12800004657306	0.0219904803552342	1.12800004657306	455.413614817121	0	8.87833664596701						190	9	4	NaN	NaN	NaN	2.6982E-11	1	25143	165.09	150.64	1	40054			2015	849	1715	1747	2015	2015		
CIQDFFK	7	Unmodified	_CIQDFFK_			0	0	0	O75794	O75794	O75794	CDC123	Cell division cycle protein 123 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.228571	956.442588	-0.57163	-0.00027394	-1.3213	-0.00063319	-1.8929	-0.00090713	479.22776100371	11.447	0.23947	11.447	11.314	11.553	0	711	28	0.847456455381371	0.0183439172239627	0.847456455381371	344.328908581961	0	7.45329268157195						239	28	3	NaN	NaN	NaN	0.024352	1	3355	58.687	25.716	1	56051			2016	359	1716	1748	2016	2016		
CIQMWFDPAQGNPNEEVAR	19	Unmodified	_CIQMWFDPAQGNPNEEVAR_			0	0	0	P15328	P15328	P15328	FOLR1	Folate receptor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1131.50696	2260.99937	0.86123	0.00097448	0.21622	0.00024465	1.0774	0.0012191	1132.00865100106	14.719	0.097572	14.719	14.675	14.772	1.7764E-15	114	34	1.24744674793813	0.0218100288138101	1.24744674793813	502.682666436755	0	8.78877070889774						331	12	4	NaN	NaN	NaN	4.5169E-05	1	35283	85.742	84.316	1	73520			2017	711	1717	1749	2017	2017		
CITDPQTGLCLLPLK	15	Unmodified	_CITDPQTGLCLLPLK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.954783	1727.89501	1.8256	0.0015791	-0.14666	-0.00012685	1.679	0.0014522	864.954473292521	15.996	0.15959	15.996	15.934	16.094	0	306	61	1.12000185836644	0.0399909592124241	1.12000185836644	452.175823059518	0	16.1454597255688						577	19	3	NaN	NaN	NaN	0.00010753	1	25274	82.437	77.05	1	226090			2018	1816	1718	1750	2018	2018		
CIVHSPTNPGFMTCSDDFR	19	Unmodified	_CIVHSPTNPGFMTCSDDFR_			0	0	0	Q05048	Q05048	Q05048	CSTF1	Cleavage stimulation factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.655574	2239.94489	0.12148	9.0825E-05	0.8357	0.00062481	0.95718	0.00071564	747.990293708416	10.578	0.070939	10.578	10.534	10.605	0	636	19	0.898312834727904	0.0121843709142423	0.898312834727904	543.018326567939	0	7.36529241078802						91	9	3	NaN	NaN	NaN	0.0013019	1	35091	42.495	42.13	1	13213			2019	1548	1719	1751	2019	2019		
CIYNLLQSSSPAVK	14	Unmodified	_CIYNLLQSSSPAVK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.411066	1578.80758	2.0346	0.0016082	1.7542	0.0013865	3.7887	0.0029947	790.411942066754	12.431	0.097508	12.431	12.387	12.485	0	330	55	1.10399226369747	0.0360662768322055	1.10399226369747	446.047098284859	0	14.5718938944958						213	12	3	NaN	NaN	NaN	7.3527E-07	1	20939	122.51	100.47	1	55766			2020	1240	1720	1752	2020	2020		
CKDDEFTHLYTLIVRPDNTYEVK	23	Unmodified	_CKDDEFTHLYTLIVRPDNTYEVK_			0	0	2	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	714.852275	2855.37999	1.0174	0.00072727	2.633	0.0018822	3.6504	0.0026095	715.356015509501	14.71	0.12415	14.71	14.648	14.772	0	438	40	1.03173026378327	0.0261684967549374	1.03173026378327	830.450125094743	0	21.0632877279289						413	15	5	NaN	NaN	NaN	0.036401	1	38009	16.766	16.289	1	87586			2021	868	1721	1753	2021	2021		
CLAFHDISPQAPTHFLVIPK	20	Unmodified	_CLAFHDISPQAPTHFLVIPK_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.405024	2290.19324	1.5413	0.0011782	-0.72661	-0.00055543	0.81468	0.00062274	764.738920418937	14.196	0.16849	14.196	14.116	14.285	0	489	151	0.997481546940468	0.100947824468875	0.997481546940468	602.883025122491	0	61.0133891519118						2534	20	5	NaN	NaN	NaN	4.7104E-16	1	35567	177.62	168.04	1	875260			2022	1149	1722	1754	2022	2022		
CLAFHDISPQAPTHFLVIPK	20	Unmodified	_CLAFHDISPQAPTHFLVIPK_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	573.555587	2290.19324	1.0074	0.00057779	-0.14923	-8.5594E-05	0.85814	0.00049219	573.806220780646	14.196	0.23942	14.196	14.09	14.329	0	555	64	0.953040030838688	0.0425184363686346	0.953040030838688	768.027752026146	0	34.2643939889199						1274	28	6	NaN	NaN	NaN	0.0010199	1	35568	69.327	65.568	1	620970			2023	1149	1722	1754	2023	2023		
CLAFHDISPQAPTHFLVIPK	20	Unmodified	_CLAFHDISPQAPTHFLVIPK_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1146.1039	2290.19324	0.20313	0.00023281	0.71049	0.00081429	0.91362	0.0010471	1146.6057818704	14.205	0.062076	14.205	14.178	14.24	1.7764E-15	60	28	1.28308947459206	0.0178030665835265	1.28308947459206	517.005325916383	0	7.17352953444924						89	8	2	NaN	NaN	NaN	2.5925E-05	1	35569	55.604	41.826	1	19056			2024	1149	1722	1754	2024	2024		
CLALATHDNPLR	12	Unmodified	_CLALATHDNPLR_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.906599	1379.69797	-1.6943	-0.00078089	0.080265	3.6995E-05	-1.614	-0.0007439	460.906569765137	7.5003	0.11526	7.5003	7.4472	7.5624	0	810	31	0.78005493425781	0.0204687855658668	0.78005493425781	473.338874553787	0	12.4204995029594						211	14	3	NaN	NaN	NaN	0.0031597	1	14806	57.032	53.93	1	40490			2025	730	1723	1755	2025	2025		
CLALATHDNPLR	12	Unmodified	_CLALATHDNPLR_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.856261	1379.69797	1.6492	0.0011394	-0.0707	-4.8844E-05	1.5785	0.0010905	690.856419022417	7.5092	0.10641	7.5092	7.4472	7.5536	0	411	25	1.04982941439551	0.0160759277723759	1.04982941439551	424.695449139348	0	6.5033168932041						169	13	3	NaN	NaN	NaN	0.026182	1	14808	44.57	42.091	1	35855			2026	730	1723	1755	2026	2026		
CLAPMMSEVIR	11	Unmodified	_CLAPMMSEVIR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.819444	1305.62433	1.501	0.00098135	-1.4442	-0.00094427	0.056718	3.7083E-05	653.817809493362	12.963	0.19509	12.963	12.875	13.07	0	534	46	0.967195187796614	0.0303198952028392	0.967195187796614	391.486959480789	0	12.2724386292456						441	23	3	NaN	NaN	NaN	0.00087318	1	12518	46.447	32.452	1	141930			2027	1026	1724	1756	2027	2027		
CLATGPGIASTVK	13	Unmodified	_CLATGPGIASTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.842287	1273.67002	1.2873	0.00082112	-2.375	-0.0015149	-1.0877	-0.00069376	637.842895292045	7.0925	0.12425	7.0925	7.0214	7.1457	0	540	34	0.963152256458504	0.0222376640579702	0.963152256458504	389.952918449023	0	9.00339685729438						145	15	2	NaN	NaN	NaN	0.0035977	1	11601	45.939	26.683	1	93353			2028	326	1725	1757	2028	2028		
CLEEFELLGK	10	Unmodified	_CLEEFELLGK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.310289	1236.60602	1.1792	0.00073026	-0.77013	-0.00047695	0.40903	0.00025332	619.310411051326	13.832	0.12414	13.832	13.788	13.912	0	594	34	0.926715457081489	0.0222931596374992	0.926715457081489	375.321295074838	0	9.02876657826221						292	15	4	NaN	NaN	NaN	4.412E-05	1	10517	100.84	63.114	1	83554			2029	21	1726	1758	2029	2029		
CLELFTELAEDK	12	Unmodified	_CLELFTELAEDK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.355425	1466.6963	0.9204	0.0006759	1.1218	0.00082381	2.0422	0.0014997	734.356490324371	16.111	0.23055	16.111	16.058	16.289	0	438	49	1.03173026378327	0.0322051603576423	1.03173026378327	417.127944618126	0	13.0205275716352						500	27	5	NaN	NaN	NaN	1.565E-05	1	17476	106.35	82.517	1	100870			2030	567	1727	1759	2030	2030		
CLEPLPQEQGNMEYTK	16	Unmodified	_CLEPLPQEQGNMEYTK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.942601	1935.87065	2.2541	0.0021841	-0.074285	-7.1978E-05	2.1798	0.0021121	969.44484756916	9.2303	0.062071	9.2303	9.2036	9.2656	0	279	46	1.13799159301878	0.0299581571070404	1.13799159301878	459.045740367545	0	12.0845922708162						223	8	3	NaN	NaN	NaN	0.00053129	1	30431	72.327	68.591	1	37304			2031	2900	1728	1760	2031	2031		
CLFASGSPFGPVK	13	Unmodified	_CLFASGSPFGPVK_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.84483	1365.67511	0.65723	0.00044945	0.79559	0.00054406	1.4528	0.00099351	684.347519086866	13.194	0.15962	13.194	13.114	13.274	0	498	37	0.991429299781895	0.0242173613457122	0.991429299781895	401.11126003276	0	9.79783059284637						259	19	3	NaN	NaN	NaN	0.022952	1	14361	32.549	18.554	1	51841			2032	817	1729	1761	2032	2032		
CLFFLLR	7	Unmodified	_CLFFLLR_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.772948	967.531344	-1.8078	-0.00087636	0.13304	6.4495E-05	-1.6747	-0.00081186	484.773266311195	17.433	0.088662	17.433	17.397	17.486	0	735	22	0.831145085810763	0.0142793929475133	0.831145085810763	337.646606017843	0	5.80089884068786						109	11	3	NaN	NaN	NaN	0.063971	1	3585	32.971	23.419	1	18254			2033	3308	1730	1762	2033	2033		
CLFQSPLFAK	10	Unmodified	_CLFQSPLFAK_			0	0	0	Q86X55	Q86X55	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.818084	1209.62162	0.58447	0.00035408	0.54784	0.00033189	1.1323	0.00068597	605.818451838473	14.356	0.133	14.356	14.311	14.444	0	558	43	0.951016745717027	0.0283318814612601	0.951016745717027	385.258197090029	0	11.4772843076532						345	16	4	NaN	NaN	NaN	0.026672	1	9717	56.014	45.312	1	93918			2034	2183	1731	1763	2034	2034		
CLLAYFLDK	9	Unmodified	_CLLAYFLDK_			0	0	0	O60825;Q16875;P16118;Q16877	O60825	O60825	PFKFB2;PFKFB3;PFKFB1;PFKFB4	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase;6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 4;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.79936	1141.58417	-1.1313	-0.00064688	0.53667	0.00030687	-0.59464	-0.00034001	571.799652342841	16.812	0.088646	16.812	16.777	16.865	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	367.444215327687	0	6.58197799410664						160	11	3	NaN	NaN	NaN	0.0074621	1	7831	62.969	48.206	1	30691			2035	284	1732	1764	2035	2035		
CLMDQATDPNILGR	14	Unmodified	_CLMDQATDPNILGR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.381982	1602.74941	1.0476	0.00084059	1.2808	0.0010277	2.3284	0.0018683	802.383654913681	11.899	0.19509	11.899	11.837	12.032	0	381	40	1.06991323971056	0.0260927771036219	1.06991323971056	432.221966430475	0	10.5409214605199						636	23	6	NaN	NaN	NaN	6.078E-08	1	21669	121.96	104.23	1	197960			2036	1465	1733	1765	2036	2036		
CLQEGAEISSPAVER	15	Unmodified	_CLQEGAEISSPAVER_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.396144	1644.77773	2.3083	0.0019006	-1.2573	-0.0010353	1.0509	0.00086533	823.395819912141	7.2077	0.20394	7.2077	7.1014	7.3053	0	375	46	1.07392668217569	0.0300987514489623	1.07392668217569	433.748327094969	0	12.1565869489208						386	24	3	NaN	NaN	NaN	0.00023271	1	22880	62.398	49.802	1	88219			2037	2691	1734	1766	2037	2037		
CLTAIVK	7	Unmodified	_CLTAIVK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	402.736031	803.45751	-1.2366	-0.00049804	-0.1423	-5.731E-05	-1.3789	-0.00055535	402.736255471092	6.0904	0.19507	6.0904	6.0461	6.2411	0	816	49	0.775960037304758	0.0327591856313176	0.775960037304758	316.128393441086	0	13.3461882393299						365	23	3	NaN	NaN	NaN	0.0061936	1	1018	88.35	26.856	1	114540			2038	506	1735	1767	2038	2038		
CLTTDEYDGHSTYPSHQYQ	19	Unmodified	_CLTTDEYDGHSTYPSHQYQ_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1151.4713	2300.92804	1.429	0.0016455	0.030425	3.5034E-05	1.4595	0.0016805	1151.97235629946	6.2411	0.070939	6.2411	6.2146	6.2855	0	111	43	1.24942920585258	0.0277601231172213	1.24942920585258	503.428164521734	0	11.1852898606318						208	9	3	NaN	NaN	NaN	0.0010148	1	35647	50.314	49.795	1	32110			2039	894	1736	1768	2039	2039		
CLTTDEYDGHSTYPSHQYQ	19	Unmodified	_CLTTDEYDGHSTYPSHQYQ_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.98329	2300.92804	1.4235	0.0010932	0.78654	0.00060405	2.21	0.0016972	768.318365756827	6.25	0.14192	6.25	6.1968	6.3387	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	553.968915046967	0	12.2581779694331						440	17	5	NaN	NaN	NaN	7.6184E-06	1	35648	66.485	66.485	1	123140			2040	894	1736	1768	2040	2040		
CLVFSLIGLHFK	12	Unmodified	_CLVFSLIGLHFK_			0	0	0	P61326;Q96A72	P61326	P61326	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.603969	1432.79008	-1.3473	-0.00064481	-0.23999	-0.00011486	-1.5873	-0.00075967	478.60344545668	17.787	0.079803	17.787	17.77	17.849	0	738	22	0.829104889055312	0.0142833636988314	0.829104889055312	502.917746123664	0	8.66399073664331						128	10	3	NaN	NaN	NaN	0.020905	1	16483	49.96	38.003	1	31303			2041	1342	1737	1769	2041	2041		
CLVGEFVSDALLVPDK	16	Unmodified	_CLVGEFVSDALLVPDK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.458213	1760.90187	1.7464	0.0015394	-0.25942	-0.00022867	1.487	0.0013107	881.458556416056	18.497	0.079856	18.497	18.47	18.55	0	270	46	1.14398322290989	0.0299622781618634	1.14398322290989	461.78886090879	0	12.094798267587						249	10	4	NaN	NaN	NaN	2.9507E-10	1	26172	95.656	77.558	1	52856			2042	523	1738	1770	2042	2042		
CMLDAALATLNTHGK	15	Unmodified	_CMLDAALATLNTHGK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.400175	1614.7858	2.0628	0.0016676	-0.099144	-8.0148E-05	1.9637	0.0015874	808.400317337017	13.345	0.10644	13.345	13.309	13.416	0	267	28	1.14597988355104	0.0179674763675075	1.14597988355104	462.921695711517	0	7.25801102365756						246	13	4	NaN	NaN	NaN	3.4329E-08	1	22040	115.04	111.3	1	74523			2043	2420	1739	1771	2043	2043		
CMPTFQFFK	9	Unmodified	_CMPTFQFFK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.277738	1204.54092	0.84816	0.00051168	-0.66476	-0.00040104	0.1834	0.00011064	603.277773765024	15.101	0.30145	15.101	15.038	15.34	0	582	88	0.934820374997243	0.0588055131724802	0.934820374997243	378.715047627281	0	23.8233283286409						1811	35	6	NaN	NaN	NaN	0.00022319	1	9590	121.31	107.67	1	1808000			2044	628	1740	1772	2044	2044		
CMQLTDFILK	10	Unmodified	_CMQLTDFILK_			0	0	0	P50914	P50914	P50914	RPL14	60S ribosomal protein L14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.822509	1267.63047	0.90701	0.00057579	-1.0786	-0.0006847	-0.17156	-0.00010891	634.822416112727	16.209	0.266	16.209	16.156	16.422	0	540	49	0.963152256458504	0.0323524136219553	0.963152256458504	389.972841907548	0	13.0992401233771						1026	31	6	NaN	NaN	NaN	2.2269E-07	1	11440	151.22	123.13	1	855890			2045	1173	1741	1773	2045	2045		
CMQLTDFILK	10	Oxidation (M)	_CM(Oxidation (M))QLTDFILK_	CM(1)QLTDFILK	CM(52)QLTDFILK	0	1	0	P50914	P50914	P50914	RPL14	60S ribosomal protein L14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.819966	1283.62538	1.4137	0.00090877	0.3362	0.00021611	1.7499	0.0011249	642.820453505363	13.877	0.18618	13.877	13.753	13.939	0	522	40	0.975277694896658	0.0262518066023084	0.975277694896658	394.829299795869	0	10.6277242608982						323	22	4	NaN	NaN	NaN	0.03023	1	11865	51.872	35.22	1	95071			2046	1173	1741	1774	2046	2046	422	
CNEIINWLDK	10	Unmodified	_CNEIINWLDK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.818812	1303.62307	1.4721	0.00096103	-0.088829	-5.7989E-05	1.3833	0.00090305	652.819236314387	14.311	0.26601	14.311	14.223	14.489	0	549	49	0.957085760909907	0.0323613705025652	0.957085760909907	387.401236652766	0	13.0989671610549						1169	31	6	NaN	NaN	NaN	1.5365E-10	1	12455	191.25	160.66	1	1207200			2047	640	1742	1775	2047	2047		
CNEPAVWSQLAK	12	Unmodified	_CNEPAVWSQLAK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.842819	1401.67108	1.9146	0.0013438	0.36686	0.00025748	2.2815	0.0016013	701.842895985808	10.791	0.2483	10.791	10.693	10.942	0	483	70	1.00151498427745	0.0463685348417228	1.00151498427745	405.087425611269	0	18.7548970342677						855	29	4	NaN	NaN	NaN	4.1969E-05	1	15495	127.93	85.854	1	280720			2048	1503	1743	1776	2048	2048		
CNLVPTDEITVYYK	14	Unmodified	_CNLVPTDEITVYYK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.921463	1713.82837	2.2317	0.0019146	1.0569	0.00090676	3.2886	0.0028214	857.921984797926	13.3	0.18625	13.3	13.212	13.398	0	303	61	1.12200181823275	0.0400129835922274	1.12200181823275	453.012846049275	0	16.1554065969238						602	22	4	NaN	NaN	NaN	0.047414	1	24876	46.068	30.189	1	222940			2049	1036	1744	1777	2049	2049		
CPALYWLSGLTCTEQNFISK	20	Unmodified	_CPALYWLSGLTCTEQNFISK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	796.716939	2387.12899	1.025	0.00081663	1.5175	0.001209	2.5425	0.0020256	797.386514306573	19.791	0.053184	19.791	19.747	19.8	0	387	19	1.06589869032374	0.0120453095163802	1.06589869032374	644.077014270048	0	7.27846563627202						99	7	4	NaN	NaN	NaN	0.017285	1	36279	38.14	38.14	1	16491			2050	634	1745	1778	2050	2050		
CPASEPGLDATTASESR	17	Unmodified	_CPASEPGLDATTASESR_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.891423	1747.76829	2.6147	0.0022876	-0.87128	-0.00076227	1.7435	0.0015253	874.890516338939	5.4962	0.097474	5.4962	5.4697	5.5671	0	360	28	1.08395544855938	0.0180443182324475	1.08395544855938	437.583285675451	0	7.2843326452408						132	12	2	NaN	NaN	NaN	0.0042271	1	25823	46.768	44.467	1	27735			2051	1920	1746	1779	2051	2051		
CPEALFQPSFLGMESCGIHETTFNSIMK	28	Unmodified	_CPEALFQPSFLGMESCGIHETTFNSIMK_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	808.620901	3230.4545	0.70042	0.00056638	0.1375	0.00011118	0.83792	0.00067756	808.871895739713	18.098	0.053182	18.098	18.08	18.133	0	447	19	1.02569221487577	0.012078599755792	1.02569221487577	825.12550678565	0	9.71671676962649						148	7	6	NaN	NaN	NaN	0.00028448	1	38483	37.997	37.848	1	26078			2052	1310;1436	1747	1780	2052	2052		
CPEALFQPSFLGMESCGIHETTFNSIMK	28	Unmodified	_CPEALFQPSFLGMESCGIHETTFNSIMK_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1077.82544	3230.4545	1.8641	0.0020091	0.1698	0.00018302	2.0339	0.0021922	1078.49444016523	18.098	0.21279	18.098	18.045	18.257	0	261	271	1.14997238118939	0.179861927164603	1.14997238118939	693.828615656907	0	108.518564424069						6182	25	8	NaN	NaN	NaN	1.3019E-27	1	38484	179.97	175.46	1	3029100			2053	1310;1436	1747	1780	2053	2053		
CPEALFQPSFLGMESCGIHETTFNSIMK	28	2 Oxidation (M)	_CPEALFQPSFLGM(Oxidation (M))ESCGIHETTFNSIM(Oxidation (M))K_	CPEALFQPSFLGM(1)ESCGIHETTFNSIM(1)K	CPEALFQPSFLGM(45)ESCGIHETTFNSIM(45)K	0	2	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1088.48872	3262.44433	2.2475	0.0024464	-1.2236	-0.0013319	1.0239	0.0011145	1089.15608805104	15.517	0.079817	15.517	15.482	15.562	0	255	148	1.15396378101328	0.0978231951321828	1.15396378101328	696.207513564894	0	59.018527767092						1587	10	6	NaN	NaN	NaN	0.00055471	1	38517	45.459	42.392	1	401130			2054	1310;1436	1747	1781	2054	2054	459;460	
CPNLTHLNLSGNK	13	Unmodified	_CPNLTHLNLSGNK_			0	0	0	P39687	P39687	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.372275	1466.73	1.6244	0.0011929	-0.17705	-0.00013002	1.4473	0.0010629	734.371784438852	7.0747	0.15969	7.0747	7.0214	7.1811	0	417	34	1.04580932352505	0.0221150800336967	1.04580932352505	422.820014619996	0	8.94111216340298						318	19	3	NaN	NaN	NaN	1.7687E-08	1	17480	166.65	139.7	1	79546			2055	1012	1748	1782	2055	2055		
CPNLTYLNLSGNK	13	Unmodified	_CPNLTYLNLSGNK_			0	0	0	Q9BTT0	Q9BTT0	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.374483	1492.73441	1.3565	0.0010138	-5.9959	-0.0044812	-4.6394	-0.0034674	747.37036037643	11.261	0.19512	11.261	11.154	11.35	0	456	52	1.01965166402748	0.0342203468041924	1.01965166402748	412.177392102172	0	13.8330116060143						367	23	2	NaN	NaN	NaN	0.00052138	1	18323	86.243	62.407	1	134560			2056	2737	1749	1783	2056	2056		
CPQIVIAFYEER	12	Unmodified	_CPQIVIAFYEER_			0	0	0	P45973;Q13185	P45973;Q13185	P45973	CBX5;CBX3	Chromobox protein homolog 5;Chromobox protein homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.879401	1523.74425	1.9003	0.0014497	1.5588	0.0011892	3.4592	0.0026389	762.881506649126	14.285	0.16844	14.285	14.205	14.373	0	402	46	1.05585747106793	0.03014029110692	1.05585747106793	426.733165132733	0	12.1814375278028						557	20	4	NaN	NaN	NaN	4.9061E-05	1	19232	106.35	91.591	1	157420			2057	1071;1639	1750	1784	2057	2057		
CPQVEEAIVQSGQK	14	Unmodified	_CPQVEEAIVQSGQK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.887955	1571.76136	2.2534	0.0017732	-4.0351	-0.0031752	-1.7817	-0.001402	786.885775209421	7.1723	0.15073	7.1723	7.1014	7.2521	0	420	37	1.04379886199097	0.0241305373401517	1.04379886199097	421.74355776424	0	9.74986564862388						463	18	4	NaN	NaN	NaN	0.0048552	1	20709	65.408	58.661	1	137760			2058	2769	1751	1785	2058	2058		
CPSTHSEELHDCIQK	15	Unmodified	_CPSTHSEELHDCIQK_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.269937	1839.78798	1.4709	0.00090355	0.63814	0.00039199	2.1091	0.0012955	614.270296131374	3.2439	0.14187	3.2439	3.2173	3.3592	0	660	22	0.882057989648486	0.0142298979470937	0.882057989648486	533.906104104464	0	8.6132991978958						243	17	4	NaN	NaN	NaN	3.3552E-05	1	28212	45.183	41.447	1	52134			2059	1109	1752	1786	2059	2059		
CPTLEQYAMR	10	Unmodified	_CPTLEQYAMR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.79174	1267.56893	1.5817	0.001004	0.6334	0.00040207	2.2151	0.0014061	634.792550985726	8.485	0.26604	8.485	8.3963	8.6623	0	555	58	0.953040030838688	0.0384317920683693	0.953040030838688	385.878675322908	0	15.5607409277208						895	31	4	NaN	NaN	NaN	1.8239E-10	1	11431	171.75	161.66	1	450430			2060	1113	1753	1787	2060	2060		
CPVTVCGDVHGQFHDLMELFR	21	Unmodified	_CPVTVCGDVHGQFHDLMELFR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	630.042253	2516.1399	-0.68583	-0.0004321	-1.1418	-0.00071941	-1.8277	-0.0011515	630.29226529907	16.697	0.1064	16.697	16.652	16.759	0	615	22	0.912521036363781	0.0142022930717167	0.912521036363781	734.976885234893	0	11.4390317692163						173	13	4	NaN	NaN	NaN	0.00098424	1	36904	34.33	33.965	1	30715			2061	1439	1754	1788	2061	2061		
CPVTVCGDVHGQFHDLMELFR	21	Unmodified	_CPVTVCGDVHGQFHDLMELFR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	839.720578	2516.1399	0.5549	0.00046596	0.47033	0.00039495	1.0252	0.00086091	840.055316615551	16.697	0.070968	16.697	16.661	16.732	0	429	31	1.03776581230406	0.0201143318791703	1.03776581230406	626.891482673953	0	12.1506251075407						175	9	4	NaN	NaN	NaN	1.1381E-05	1	36905	40.53	39.279	1	27221			2062	1439	1754	1788	2062	2062		
CQCEEGFQLDPHTK	14	Unmodified	_CQCEEGFQLDPHTK_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.871979	1747.7294	2.7668	0.0024206	-1.9362	-0.0016939	0.83062	0.00072669	874.870079397195	6.2146	0.088723	6.2146	6.1879	6.2767	0	354	25	1.08796502040166	0.0160360785549387	1.08796502040166	439.201995171392	0	6.47362512946791						139	11	3	NaN	NaN	NaN	0.018575	1	25821	47.57	45.587	1	26481			2063	491	1755	1789	2063	2063		
CQEVISWLDANTLAEK	16	Unmodified	_CQEVISWLDANTLAEK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.308498	1875.90366	0.29975	0.00018774	0.23373	0.00014639	0.53348	0.00033412	626.308882598785	15.81	0.097546	15.81	15.775	15.872	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	560.856358784349	0	9.81305486365113						167	12	4	NaN	NaN	NaN	0.01109	1	29057	50.314	48.472	1	32071			2064	618	1756	1790	2064	2064		
CQEVISWLDANTLAEK	16	Unmodified	_CQEVISWLDANTLAEK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.959108	1875.90366	0.79741	0.00074873	1.4952	0.001404	2.2926	0.0021527	939.461794697495	15.819	0.070941	15.819	15.783	15.854	0	123	34	1.24149774378079	0.0218249814515028	1.24149774378079	500.912216728696	0	8.80581530953248						184	9	3	NaN	NaN	NaN	0.061356	1	29059	34.472	33.734	1	32490			2065	618	1756	1790	2065	2065		
CQHAAEIITDLLR	13	Unmodified	_CQHAAEIITDLLR_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.936447	1538.78751	-2.4581	-0.0012633	0.10455	5.3734E-05	-2.3535	-0.0012096	513.936198097144	14.178	0.079802	14.178	14.134	14.214	0	798	16	0.788241307691771	0.0102294058339829	0.788241307691771	477.816117255637	0	6.20086124608065						93	10	3	NaN	NaN	NaN	0.0018788	1	19690	48.785	44.258	1	17481			2066	2473	1757	1791	2066	2066		
CQHAAEIITDLLR	13	Unmodified	_CQHAAEIITDLLR_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.936447	1538.78751	-1.2636	-0.00064943	0.49619	0.00025501	-0.76745	-0.00039442	513.936514654902	14.169	0.12413	14.169	14.125	14.249	0	753	25	0.81889964927511	0.0163340619501384	0.81889964927511	496.400589074877	0	9.90138166649797						240	15	4	NaN	NaN	NaN	0.0019389	1	19692	90.142	75.687	1	64570			2067	2473	1757	1791	2067	2067		
CQLEINFNTLQTK	13	Unmodified	_CQLEINFNTLQTK_			0	0	0	O43707;P12814;P35609;Q08043	O43707;P12814	O43707	ACTN4;ACTN1;ACTN2;ACTN3	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.906147	1607.79774	2.2866	0.0018405	-0.4823	-0.0003882	1.8043	0.0014523	804.905724175966	13.088	0.14188	13.088	13.043	13.185	0	345	40	1.09397730668811	0.0260496561958328	1.09397730668811	441.931450024209	0	10.5232185940934						547	17	5	NaN	NaN	NaN	3.7009E-17	1	21851	219.93	195.11	1	255500			2068	221;671	1758	1792	2068	2068		
CQLLQQHEEYQEELEFCEK	19	Unmodified	_CQLLQQHEEYQEELEFCEK_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.373789	2539.09954	1.4033	0.0011891	-0.59122	-0.00050098	0.81203	0.0006881	847.707708666758	10.897	0.062052	10.897	10.871	10.933	0	531	28	0.969216233931596	0.0181894169559895	0.969216233931596	585.453116396252	0	10.9872807217821						149	8	4	NaN	NaN	NaN	0.00017663	1	36981	18.396	17.454	1	23341			2069	3134	1759	1793	2069	2069		
CQVFEETQIGGER	13	Unmodified	_CQVFEETQIGGER_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.856654	1551.69876	2.1745	0.0016893	-1.7306	-0.0013444	0.4439	0.00034485	776.856381142162	8.068	0.23967	8.068	8.0148	8.2544	0	471	64	1.00957851518677	0.0423130912523418	1.00957851518677	407.962985882618	0	17.098397786363						957	28	5	NaN	NaN	NaN	3.417E-24	1	20107	216.04	187.39	1	393970			2070	2679	1760	1794	2070	2070		
CRPDQLTGLSLLPLSEK	17	Unmodified	_CRPDQLTGLSLLPLSEK_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.015426	1926.02445	-1.1224	-0.00072175	-1.7422	-0.0011203	-2.8647	-0.001842	643.014834572011	14.728	0.035453	14.728	14.71	14.746	0	699	22	0.85560534332665	0.0142536233772099	0.85560534332665	517.721067536624	0	8.62477212031251						58	5	2	NaN	NaN	NaN	0.011959	1	30199	40.83	36.523	1	12791			2071	1816	1761	1795	2071	2071		
CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK	37	Unmodified	_CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	987.223259	3944.86393	1.208	0.0011925	0.29176	0.00028803	1.4997	0.0014806	987.725189171043	13.717	0.16845	13.717	13.646	13.815	0	516	85	0.979317271586824	0.0564915970747152	0.979317271586824	787.206705877638	0	45.4097618138563						1178	20	5	NaN	NaN	NaN	0.0073786	1	38754	14.404	14.362	1	220930			2072	1833	1762	1796	2072	2072		
CSDFTEEICR	10	Unmodified	_CSDFTEEICR_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.76592	1315.51729	0.93217	0.00061408	1.6203	0.0010674	2.5525	0.0016815	658.766877461963	7.4915	0.14189	7.4915	7.456	7.5979	0	561	34	0.948993180460448	0.0222592210224549	0.948993180460448	384.089160360347	0	9.00904841975989						245	17	3	NaN	NaN	NaN	2.2811E-10	1	12816	170.95	134.74	1	60907			2073	1158	1763	1797	2073	2073		
CSDIVFAR	8	Unmodified	_CSDIVFAR_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.236927	966.459301	0.34595	0.00016752	2.1333	0.001033	2.4792	0.0012005	484.23835410859	6.986	0.16855	6.986	6.9417	7.1102	-8.8818E-16	675	34	0.871889544407995	0.0223767933297507	0.871889544407995	354.204239156296	0	9.09054949328896						300	20	3	NaN	NaN	NaN	0.0050231	1	3564	60.709	44.161	1	78016			2074	2370	1764	1798	2074	2074		
CSDSTLLSNLLEEMK	15	Unmodified	_CSDSTLLSNLLEEMK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.413145	1738.81174	0.83528	0.00072704	1.5355	0.0013365	2.3708	0.0020636	870.414314657798	19.321	0.053194	19.321	19.295	19.348	0	294	28	1.12800004657306	0.017989734652339	1.12800004657306	455.382152226652	0	7.26259197316256						119	7	3	NaN	NaN	NaN	6.9834E-05	1	25560	78.157	75.072	1	28187			2075	108	1765	1799	2075	2075		
CSEGSFLLTTFPR	13	Unmodified	_CSEGSFLLTTFPR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.869034	1513.72351	0.95465	0.0007235	1.7993	0.0013636	2.7539	0.0020871	757.870585052195	14.923	0.097541	14.923	14.879	14.976	0	381	43	1.06991323971056	0.0281018521198355	1.06991323971056	432.439684221555	0	11.3582630868556						269	12	3	NaN	NaN	NaN	1.2137E-16	1	18919	175.64	166.66	1	54544			2076	1824	1766	1800	2076	2076		
CSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK	32	Unmodified	_CSEGSFLLTTFPRPVTVEPMDQLDDEEGLPEK_			0	0	1	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1212.90765	3635.70113	1.5698	0.001904	0.37203	0.00045124	1.9418	0.0023552	1213.57643353643	17.867	0.079781	17.867	17.832	17.912	0	207	37	1.18585551256002	0.023895805459075	1.18585551256002	715.13618993192	0	14.4104868513585						376	10	5	NaN	NaN	NaN	6.3391E-05	1	38698	57.71	56.24	1	69761			2077	1824	1767	1801	2077	2077		
CSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK	32	Unmodified	_CSEGVFLLTTTPRPVIVEPLEQLDDEDGLPEK_			0	0	1	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1199.60619	3595.79675	1.3089	0.0015702	-0.67366	-0.00080813	0.63528	0.00076208	1199.93991476632	18.825	0.062069	18.825	18.807	18.869	0	264	67	1.14797626962532	0.0438752548134298	1.14797626962532	692.322245136925	0	26.4603160554029						238	8	5	NaN	NaN	NaN	0.0093928	1	38683	34.372	33.917	1	43469			2078	814	1768	1802	2078	2078		
CSLLDPFAAVR	11	Unmodified	_CSLLDPFAAVR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.823898	1247.63324	0.31648	0.00019775	-4.0438	-0.0025267	-3.7273	-0.0023289	624.821311937586	15.721	0.11528	15.721	15.677	15.792	0	561	52	0.948993180460448	0.0344053845172715	0.948993180460448	384.306317417411	0	13.9328784393869						242	14	2	NaN	NaN	NaN	0.07264	1	10853	15.879	9.1888	1	57740			2079	2192	1769	1803	2079	2079		
CSLPAEEDSVLEK	13	Unmodified	_CSLPAEEDSVLEK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.847964	1475.68137	1.716	0.0012679	0.85344	0.00063056	2.5695	0.0018984	738.848930183026	8.4938	0.20394	8.4938	8.4229	8.6268	0	441	43	1.02971785871157	0.0281834048046041	1.02971785871157	416.290641514015	0	11.3938857784191						527	24	5	NaN	NaN	NaN	0.0020491	1	17759	78.043	72.547	1	200320			2080	869	1770	1804	2080	2080		
CSNLCTEIVEYTSK	14	Unmodified	_CSNLCTEIVEYTSK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.384387	1702.75422	1.6209	0.0013816	0.83577	0.0007124	2.4567	0.002094	852.385994644444	12.316	0.12415	12.316	12.263	12.387	0	363	28	1.08195024817156	0.0180492926905949	1.08195024817156	436.864652794356	0	7.28785634809532						284	15	4	NaN	NaN	NaN	6.9998E-06	1	24572	117.21	111.18	1	57415			2081	828	1771	1805	2081	2081		
CSQAVYAAEK	10	Unmodified	_CSQAVYAAEK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.763506	1125.51246	1.1496	0.0006481	-0.98296	-0.00055415	0.16665	9.395E-05	563.762608630813	2.8538	0.12413	2.8538	2.8272	2.9513	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	356.799645586362	0	6.59498200789261						173	15	3	NaN	NaN	NaN	0.011061	1	7400	65.933	61.393	1	33278			2082	791	1772	1806	2082	2082		
CSQDQGVLASELAQNK	16	Unmodified	_CSQDQGVLASELAQNK_			0	0	0	Q9H6F5	Q9H6F5	Q9H6F5	CCDC86	Coiled-coil domain-containing protein 86	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.417607	1746.82066	2.5231	0.0022063	0.62227	0.00054412	3.1454	0.0027504	874.419977861284	8.5648	0.12412	8.5648	8.5293	8.6534	0	315	61	1.11400032671325	0.040046054292028	1.11400032671325	449.714053467582	0	16.1663089042221						356	15	3	NaN	NaN	NaN	5.31E-18	1	25795	194.83	178.54	1	77461			2083	2904	1773	1807	2083	2083		
CSVCPDYDLCSVCEGK	16	Unmodified	_CSVCPDYDLCSVCEGK_			0	0	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.880829	1947.7471	2.1279	0.0020744	-0.39974	-0.0003897	1.7281	0.0016847	974.880915907408	9.4874	0.13302	9.4874	9.4519	9.5849	0	276	37	1.13998907770044	0.0239681717267723	1.13998907770044	459.831533978677	0	9.66791821726758						392	16	5	NaN	NaN	NaN	9.544E-07	1	30669	108.91	98.126	1	102240			2084	1673	1774	1808	2084	2084		
CTEDMTEDELR	11	Unmodified	_CTEDMTEDELR_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.779224	1397.54389	1.2239	0.00085643	-0.42612	-0.00029819	0.79773	0.00055824	699.779763170205	5.8332	0.079773	5.8332	5.7978	5.8775	0	510	28	0.983355730988811	0.0181718123582917	0.983355730988811	397.753945780624	0	7.35024959912283						142	10	3	NaN	NaN	NaN	0.00088533	1	15358	61.48	60.917	1	33492			2085	1634	1775	1809	2085	2085		
CTGGEVGATSALAPK	15	Unmodified	_CTGGEVGATSALAPK_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.850841	1417.68713	1.7304	0.0012284	-1.9744	-0.0014015	-0.24396	-0.00017317	709.849923884439	5.8775	0.14186	5.8775	5.7889	5.9307	0	492	52	0.995464410099171	0.0342865984735948	0.995464410099171	402.595689913234	0	13.8665296591365						334	17	2	NaN	NaN	NaN	0.004059	1	16006	44.82	29.238	1	123570			2086	900	1776	1810	2086	2086		
CTGGEVGATSALAPK	15	Unmodified	_CTGGEVGATSALAPK_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.850841	1417.68713	3.0075	0.0021348	-2.0515	-0.0014563	0.95596	0.00067859	709.849660249554	5.8775	0.34586	5.8775	5.7978	6.1436	0	348	82	1.09197348738011	0.0541628493019599	1.09197348738011	441.626858164496	0	21.9050821681124						1070	40	5	NaN	NaN	NaN	5.8545E-07	1	16007	108.24	102.75	1	552460			2087	900	1776	1810	2087	2087		
CTPSVISFGSK	11	Unmodified	_CTPSVISFGSK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.794806	1181.57506	1.1412	0.00067534	2.125	0.0012576	3.2662	0.0019329	591.796689745821	8.9642	0.1775	8.9642	8.8842	9.0617	0	600	76	0.922661313351899	0.0506733234080127	0.922661313351899	373.871426030691	0	20.5333283298098						624	21	3	NaN	NaN	NaN	0.005816	1	8914	60.547	42.211	1	210500			2088	2415	1777	1811	2088	2088		
CTTDHISAAGPWLK	14	Unmodified	_CTTDHISAAGPWLK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.589047	1555.74531	0.59047	0.0003068	1.3216	0.00068669	1.9121	0.00099349	519.589780639159	8.7422	0.079893	8.7422	8.7068	8.7866	0	648	25	0.890187667287968	0.0162548450794181	0.890187667287968	539.561574421343	0	9.85240542564009						169	10	3	NaN	NaN	NaN	0.030897	1	20226	35.33	29.464	1	47017			2089	2674	1778	1812	2089	2089		
CTVFHGAQVEDAFR	14	Unmodified	_CTVFHGAQVEDAFR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.256068	1635.74637	-0.033507	-1.8303E-05	-1.1712	-0.00063975	-1.2047	-0.00065805	546.255794493578	9.044	0.1596	9.044	8.9996	9.1592	0	708	82	0.849494101904619	0.0550088617057031	0.849494101904619	514.674427527222	0	33.3276644815195						682	19	5	NaN	NaN	NaN	7.3839E-05	1	22649	115.04	100.58	1	251080			2090	1127	1779	1813	2090	2090		
CTVFHGAQVEDAFR	14	Unmodified	_CTVFHGAQVEDAFR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.880464	1635.74637	2.2674	0.0018567	-0.024552	-2.0105E-05	2.2429	0.0018366	818.880805959751	9.044	0.079809	9.044	9.0085	9.0883	0	351	40	1.08996939197032	0.026056835587305	1.08996939197032	440.248115927234	0	10.5245824872201						271	10	4	NaN	NaN	NaN	1.7373E-08	1	22653	126.48	108.75	1	71369			2091	1127	1779	1813	2091	2091		
CTVIGGSGFLGQHMVEQLLAR	21	Unmodified	_CTVIGGSGFLGQHMVEQLLAR_			0	0	0	Q15738	Q15738	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.389157	2272.14564	0.0093258	7.0726E-06	-1.1117	-0.00084308	-1.1023	-0.00083601	758.721970087598	17.672	0.053182	17.672	17.646	17.699	0	588	19	0.93076847747433	0.0121573771653146	0.93076847747433	562.588227676291	0	7.34833359546712						89	7	3	NaN	NaN	NaN	0.01999	1	35389	37.886	37.367	1	17473			2092	1865	1780	1814	2092	2092		
CTYLVLDEADR	11	Unmodified	_CTYLVLDEADR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.819009	1353.62347	1.3806	0.00093579	1.7379	0.001178	3.1185	0.0021138	677.819708952627	10.392	0.23943	10.392	10.347	10.587	0	507	37	0.985374541851584	0.0242240595168645	0.985374541851584	398.697195220066	0	9.80141476769796						282	28	3	NaN	NaN	NaN	4.8241E-05	1	14000	81.099	72.916	1	64505			2093	2435	1781	1815	2093	2093		
CVACECDLGGSSSGAEVR	18	Unmodified	_CVACECDLGGSSSGAEVR_			0	0	0	Q8WWI1	Q8WWI1	Q8WWI1	LMO7	LIM domain only protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.392949	1912.77135	1.9864	0.0019018	-0.29929	-0.00028654	1.6871	0.0016153	957.393279355906	5.8421	0.026604	5.8421	5.8332	5.8598	0	312	19	1.11600111266355	0.012003889902227	1.11600111266355	450.213860683827	0	4.84257368095882						61	4	3	NaN	NaN	NaN	8.905E-05	1	29886	66.485	66.363	1	9174.4			2094	2389	1782	1816	2094	2094		
CVAEIIAGLIR	11	Unmodified	_CVAEIIAGLIR_			0	0	0	Q14997	Q14997	Q14997	PSME4	Proteasome activator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.849916	1213.68528	-1.2274	-0.0007461	0.062396	3.7928E-05	-1.165	-0.00070817	607.850407171302	17.956	0.05319	17.956	17.938	17.991	0	621	19	0.908462957275599	0.0121759257181062	0.908462957275599	368.005700881082	0	4.9322980556139						69	7	2	NaN	NaN	NaN	0.0017234	1	9842	48.157	39.394	1	12016			2095	1783	1783	1817	2095	2095		
CVANNQVETLEK	12	Unmodified	_CVANNQVETLEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.843016	1403.67148	1.6502	0.0011598	-1.0566	-0.00074266	0.59358	0.00041719	702.842788358554	5.2657	0.26607	5.2657	5.2036	5.4697	0	495	40	0.993446994398923	0.0262300352853753	0.993446994398923	401.818539437	0	10.6092368562929						616	31	5	NaN	NaN	NaN	0.00025419	1	15570	90.142	85.94	1	229780			2096	1055	1784	1818	2096	2096		
CVEDPETGLCLLPLTDK	17	Unmodified	_CVEDPETGLCLLPLTDK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.473734	1958.93291	0.87843	0.00086128	-0.39836	-0.00039058	0.48007	0.00047069	980.974689321748	19.623	0.062077	19.623	19.587	19.649	0	234	37	1.16792504164217	0.0239220824983335	1.16792504164217	471.080888229379	0	9.64893761997439						172	8	3	NaN	NaN	NaN	0.0037412	1	30878	23.432	20.347	1	36305			2097	1816	1785	1819	2097	2097		
CVEDPETGLCLLPLTDK	17	Unmodified	_CVEDPETGLCLLPLTDK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.473734	1958.93291	1.117	0.0010952	2.2939	0.0022491	3.4109	0.0033443	980.477320517846	15.916	0.21279	15.916	15.81	16.023	0	234	61	1.16792504164217	0.0398537179225746	1.16792504164217	471.080879297842	0	16.0749395833287						1062	25	5	NaN	NaN	NaN	0.0019523	1	30879	59.67	55.364	1	272770			2098	1816	1785	1819	2098	2098		
CVESEVIDFWDK	12	Unmodified	_CVESEVIDFWDK_			0	0	0		REV__Q8NCN5	REV__Q8NCN5			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.845224	1525.6759	2.363	0.001805	7.7192	0.0058963	10.082	0.0077013	763.850961068211	11.083	0.46115	11.083	10.888	11.35	0	444	55	1.02770517576159	0.0362308083382761	1.02770517576159	415.350434458228	0	14.6428006192768						1728	53	5	NaN	NaN	NaN	0.0048913	1	19285	32.14	20.658	1	1196000	+		2099	3503	1786	1820	2099	2099		
CVFEMPNENDK	11	Unmodified	_CVFEMPNENDK_			0	0	0	Q9P0L0	Q9P0L0	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.789395	1381.56424	1.3067	0.00090398	-0.48971	-0.00033877	0.81702	0.00056521	691.789222262697	8.9819	0.16863	8.9819	8.8842	9.0528	0	513	43	0.981336640919867	0.028273132407321	0.981336640919867	396.982229579292	0	11.4373912806598						626	20	4	NaN	NaN	NaN	0.00083637	1	14865	63.397	56.247	1	192610			2100	3146	1787	1821	2100	2100		
CVICGGPGVSDAYYCK	16	Unmodified	_CVICGGPGVSDAYYCK_			0	0	0	Q7RTV0	Q7RTV0	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.386407	1804.75826	2.1754	0.0019652	-0.52908	-0.00047797	1.6463	0.0014873	903.386277752442	8.8842	0.142	8.8842	8.831	8.973	0	300	49	1.12400150285141	0.0320059751751898	1.12400150285141	453.636747903206	0	12.91731946542						343	17	4	NaN	NaN	NaN	9.5014E-13	1	27342	126.48	111.5	1	84617			2101	2126	1788	1822	2101	2101		
CVIDICMK	8	Unmodified	_CVIDICMK_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.742673	1037.47079	0.49932	0.00025952	1.7667	0.00091822	2.266	0.0011777	519.74272716131	10.09	0.088666	10.09	10.055	10.143	0	675	25	0.871889544407995	0.0162751600009597	0.871889544407995	353.863961297506	0	6.60541535981002						164	11	3	NaN	NaN	NaN	0.040654	1	5173	29.102	19.023	1	41621			2102	168	1789	1823	2102	2102		
CVLLSNLSSTSHVPEVDPGSAELQK	25	Unmodified	_CVLLSNLSSTSHVPEVDPGSAELQK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.781325	2666.32215	2.8584	0.0025433	-1.1079	-0.00098582	1.7505	0.0015575	890.115208827503	12.955	0.097528	12.955	12.91	13.008	0	423	211	1.04178812298108	0.140587579599401	1.04178812298108	629.126548241256	0	84.8995844048138						1580	12	5	NaN	NaN	NaN	5.526E-14	1	37493	148.22	142.17	1	342000			2103	1127	1790	1824	2103	2103		
CVSVQTDPTDEIPTK	15	Unmodified	_CVSVQTDPTDEIPTK_			0	0	0	P18583	P18583	P18583	SON	Protein SON	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.403634	1688.79272	2.1858	0.0018479	-0.70828	-0.00059878	1.4775	0.0012491	845.402938129572	8.1036	0.1065	8.1036	8.0502	8.1567	0	372	43	1.07593298845566	0.0280863584131199	1.07593298845566	434.46403428289	0	11.3413313983374						294	13	3	NaN	NaN	NaN	0.00010597	1	24170	70.806	64.778	1	65223			2104	754	1791	1825	2104	2104		
CVTSELLK	8	Unmodified	_CVTSELLK_			0	0	0	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.254785	948.495018	0.72549	0.00034479	-2.0159	-0.00095806	-1.2904	-0.00061326	475.253953543904	7.2875	0.23053	7.2875	7.2077	7.4383	0	678	55	0.869855008346864	0.0366292905732287	0.869855008346864	353.471595730991	0	14.8845654335191						616	27	3	NaN	NaN	NaN	0.00066167	1	3220	113.14	91.208	1	271530			2105	362	1792	1826	2105	2105		
CVYTIPAHQNLVTGVK	16	Unmodified	_CVYTIPAHQNLVTGVK_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.477271	1798.93999	1.2087	0.0010884	1.1644	0.0010486	2.3731	0.0021369	900.478126713948	9.2745	0.053183	9.2745	9.2479	9.3011	0	192	16	1.1958073123591	0.0099490673975271	1.1958073123591	482.628813520385	0	4.01545177394001						62	7	3	NaN	NaN	NaN	0.00013189	1	27193	61.194	46.046	1	8459.9			2106	188	1793	1827	2106	2106		
CWEVQDSGQTIPK	13	Unmodified	_CWEVQDSGQTIPK_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.361573	1546.70859	2.2232	0.0017216	1.3159	0.001019	3.5391	0.0027406	774.864520750678	8.3697	0.13307	8.3697	8.2987	8.4318	0	411	76	1.04982941439551	0.0502407735798889	1.04982941439551	424.240160384744	0	20.3024925279487						501	16	3	NaN	NaN	NaN	6.3768E-05	1	19937	68.548	60.991	1	124500			2107	1462	1794	1828	2107	2107		
CWYIHDLLK	9	Unmodified	_CWYIHDLLK_			0	0	0	Q9Y3C8	Q9Y3C8	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.546231	1246.61686	-2.4366	-0.001015	-0.40554	-0.00016893	-2.8422	-0.0011839	416.545941234116	12.618	0.070928	12.618	12.582	12.653	0	840	19	0.759569036796863	0.0123001033069321	0.759569036796863	461.395082227412	0	7.47161469435378						117	9	3	NaN	NaN	NaN	0.0076384	1	10818	49.325	45.123	1	28049			2108	3385	1795	1829	2108	2108		
CWYIHDLLK	9	Unmodified	_CWYIHDLLK_			0	0	0	Q9Y3C8	Q9Y3C8	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.315709	1246.61686	0.58446	0.00036489	0.34465	0.00021517	0.92911	0.00058006	624.315531083205	12.6	0.133	12.6	12.573	12.706	0	555	28	0.953040030838688	0.0182070471487186	0.953040030838688	385.948564086821	0	7.37323037430559						224	16	3	NaN	NaN	NaN	0.0013117	1	10819	53.878	44.364	1	61719			2109	3385	1795	1829	2109	2109		
CYGFVTMSTAEEATK	15	Unmodified	_CYGFVTMSTAEEATK_			0	0	0	Q15424	Q15424	Q15424	SAFB	Scaffold attachment factor B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.873656	1693.73276	2.2081	0.0018722	1.856	0.0015737	4.0641	0.0034459	848.377230512363	10.782	0.12416	10.782	10.755	10.879	0	369	37	1.07793901817685	0.0240673839691297	1.07793901817685	435.263730895677	0	9.71823003217747						363	15	4	NaN	NaN	NaN	2.6191E-06	1	24300	89.382	88.419	1	79340			2110	1846	1796	1830	2110	2110		
CYLFGGLANDSEDPK	15	Unmodified	_CYLFGGLANDSEDPK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.37742	1684.74029	1.753	0.0014784	2.3296	0.0019647	4.0826	0.0034432	843.379147618853	12.414	0.088682	12.414	12.369	12.458	0	303	34	1.12200181823275	0.0219995616552313	1.12200181823275	453.075584776902	0	8.88364359112984						274	11	4	NaN	NaN	NaN	0.00013683	1	24035	71.219	68.74	1	63697			2111	1193	1797	1831	2111	2111		
CYLGATCAYDAAK	13	Unmodified	_CYLGATCAYDAAK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.318319	1462.62209	1.7789	0.0013027	1.7029	0.0012471	3.4818	0.0025498	732.319604205516	7.2343	0.070942	7.2343	7.2077	7.2787	-8.8818E-16	420	34	1.04379886199097	0.0221181322684503	1.04379886199097	422.018255082609	0	8.94258072653321						123	9	3	NaN	NaN	NaN	0.052555	1	17338	37.749	33.547	1	27030			2112	2355	1798	1832	2112	2112		
CYLLVHQAK	9	Unmodified	_CYLLVHQAK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.302601	1130.59065	2.0717	0.0011732	-1.0769	-0.00060987	0.99479	0.00056335	566.301552999234	4.8667	0.1862	4.8667	4.778	4.9642	0	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.637753429107	0	7.38867095946637						208	22	3	NaN	NaN	NaN	0.0060749	1	7543	46.835	44.237	1	54486			2113	1581	1799	1833	2113	2113		
CYLTMTQALEAR	12	Unmodified	_CYLTMTQALEAR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.849787	1455.68502	0.93157	0.00067898	2.7993	0.0020403	3.7309	0.0027192	728.8519346296	11.802	0.097512	11.802	11.758	11.855	0	408	28	1.0518390438467	0.0180816768665149	1.0518390438467	425.287966737287	0	7.31092806903013						202	12	4	NaN	NaN	NaN	0.00065174	1	17115	72.365	67.825	1	44433			2114	1737	1800	1834	2114	2114		
CYPDRVDYVDK	11	Unmodified	_CYPDRVDYVDK_			0	0	1	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.218731	1428.63436	-1.8257	-0.00087126	3.3693	0.0016079	1.5436	0.00073662	477.220460278045	5.2302	0.10643	5.2302	5.1947	5.3012	-8.8818E-16	792	22	0.792332785124922	0.0143191751131978	0.792332785124922	480.625886419833	0	8.68595413541601						133	13	3	NaN	NaN	NaN	0.038294	1	16345	36.514	35.257	1	28143			2115	2605	1801	1835	2115	2115		
CYSCGEFGHIQK	12	Unmodified	_CYSCGEFGHIQK_			0	0	0	P62633	P62633	P62633	CNBP	Cellular nucleic acid-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.879833	1484.61767	0.41336	0.00020498	1.3843	0.00068647	1.7977	0.00089144	495.880282967549	5.1593	0.11527	5.1593	5.1238	5.2391	0	732	28	0.833184998970724	0.0183592202134729	0.833184998970724	505.22414374523	0	11.1326071924488						214	14	4	NaN	NaN	NaN	0.032185	1	18041	32.549	29.877	1	64425			2116	1393	1802	1836	2116	2116		
DAAAFLLSCQIPGLVK	16	Unmodified	_DAAAFLLSCQIPGLVK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.963465	1701.91238	1.2842	0.0010941	0.033851	2.884E-05	1.318	0.0011229	852.46547541424	18.585	0.14187	18.585	18.541	18.683	0	267	136	1.14597988355104	0.0897881914640797	1.14597988355104	462.720081084955	0	36.254387909489						677	17	4	NaN	NaN	NaN	0.00022758	1	24565	77.157	55.015	1	161410			2117	307	1803	1837	2117	2117		
DAAEFELFFR	10	Unmodified	_DAAEFELFFR_			0	0	0	Q6XQN6	Q6XQN6	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.800946	1243.58734	-0.58834	-0.00036642	-0.11007	-6.8553E-05	-0.69841	-0.00043497	622.800804784768	18.053	0.088674	18.053	18.009	18.098	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	365.440200308274	0	9.04449078325615						213	11	3	NaN	NaN	NaN	0.00043462	1	10726	96.311	86.797	1	50066			2118	2093	1804	1838	2118	2118		
DAAFEALGTALK	12	Unmodified	_DAAFEALGTALK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.821878	1205.6292	0.20315	0.00012267	-1.1476	-0.00069294	-0.94444	-0.00057027	603.821306439254	13.717	0.18617	13.717	13.655	13.841	0	609	64	0.916577990479294	0.0425832821931338	0.916577990479294	371.320886335654	0	17.2511911166089						394	22	3	NaN	NaN	NaN	2.9812E-05	1	9626	79.311	62.853	1	88370			2119	1713	1805	1839	2119	2119		
DAAFQNVLTHVCLD	14	Unmodified	_DAAFQNVLTHVCLD_			0	0	0	Q8NBU5	Q8NBU5	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.882672	1601.75079	1.0859	0.0008708	1.3376	0.0010726	2.4235	0.0019434	801.884004663486	16.59	0.13301	16.59	16.519	16.652	0	405	31	1.05384839605172	0.0200949105761223	1.05384839605172	425.7343885331	0	8.11795557957362						352	14	4	NaN	NaN	NaN	5.2945E-08	1	21628	145.08	134.29	1	101150			2120	2295	1806	1840	2120	2120		
DAAIYLVTSLASK	13	Unmodified	_DAAIYLVTSLASK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.377017	1350.73948	0.91645	0.00061987	0.9374	0.00063404	1.8539	0.0012539	676.377420073806	16.227	0.23053	16.227	16.182	16.413	0	438	46	1.03173026378327	0.030194421347751	1.03173026378327	417.462422346997	0	12.217375722775						567	27	4	NaN	NaN	NaN	0.0071868	1	13912	54.27	44.756	1	208340			2121	1264	1807	1841	2121	2121		
DAALAVAEAMADK	13	Unmodified	_DAALAVAEAMADK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.316103	1274.61765	1.8543	0.0011836	0.45075	0.00028772	2.305	0.0014713	638.818487300441	12.928	0.11528	12.928	12.884	12.999	0	489	31	0.997481546940468	0.0201727650206149	0.997481546940468	403.848637481232	0	8.16731266136463						237	14	3	NaN	NaN	NaN	0.0089044	1	11616	60	56.107	1	45210			2122	1075	1808	1842	2122	2122		
DAANLLNDALAIR	13	Unmodified	_DAANLLNDALAIR_			0	0	0	Q07866	Q07866	Q07866	KLC1	Kinesin light chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.37534	1368.73613	-0.31984	-0.00021921	-1.0334	-0.00070829	-1.3533	-0.0009275	685.37492963185	17.034	0.14187	17.034	16.98	17.122	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	398.652706457246	0	8.98424857827825						295	17	4	NaN	NaN	NaN	8.7909E-07	1	14460	122.51	103.19	1	89534			2123	1571	1809	1843	2123	2123		
DAASAALADAAEELLDR	17	Unmodified	_DAASAALADAAEELLDR_			0	0	0	Q86X53	Q86X53	Q86X53	ERICH1	Glutamate-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.41813	1700.82171	1.6839	0.0014337	1.2475	0.0010622	2.9314	0.0024958	851.417325512186	19.782	0.053217	19.782	19.756	19.809	0	345	31	1.09397730668811	0.0200395758714129	1.09397730668811	441.724931167716	0	8.0915574923838						118	7	4	NaN	NaN	NaN	1.3009E-06	1	24517	111.38	98.205	1	21568			2124	2182	1810	1844	2124	2124		
DAAVMAFGCILEGPEPSQLK	20	Unmodified	_DAAVMAFGCILEGPEPSQLK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.02138	2132.02821	0.78748	0.00084026	0.97798	0.0010435	1.7655	0.0018838	1067.5241798271	18.062	0.133	18.062	18.009	18.142	0	165	76	1.21370334790578	0.0496498953115305	1.21370334790578	489.265787264372	0	20.0147714506226						779	16	4	NaN	NaN	NaN	8.3627E-11	1	33765	90.376	84.171	1	188930			2125	1780	1811	1845	2125	2125		
DACVISSDFHER	12	Unmodified	_DACVISSDFHER_			0	0	0	Q99805	Q99805	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.213869	1434.61978	-1.6868	-0.00080835	-0.29029	-0.00013911	-1.9771	-0.00094746	479.213789889531	6.7111	0.12414	6.7111	6.6668	6.7909	0	795	19	0.790287188799094	0.0122761416426982	0.790287188799094	479.365900564417	0	7.44636099055424						120	15	3	NaN	NaN	NaN	0.0098676	1	16515	31.425	29.922	1	24533			2126	2675	1812	1846	2126	2126		
DACVISSDFHER	12	Unmodified	_DACVISSDFHER_			0	0	0	Q99805	Q99805	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.317165	1434.61978	2.2796	0.0016375	-2.1007	-0.001509	0.17889	0.0001285	718.315195145837	6.7023	0.15068	6.7023	6.658	6.8087	0	432	49	1.035754240522	0.0321962682472983	1.035754240522	418.842337083535	0	13.0196524527581						348	18	4	NaN	NaN	NaN	4.8485E-05	1	16516	83.775	71.179	1	114840			2127	2675	1812	1846	2127	2127		
DADAGDEDEESEEPR	15	Unmodified	_DADAGDEDEESEEPR_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.313725	1662.6129	2.9061	0.0024188	-2.4031	-0.0020001	0.50297	0.00041862	832.311190101551	3.1552	0.053203	3.1552	3.1375	3.1907	0	465	22	1.01360860968299	0.0141024087806776	1.01360860968299	409.349775523434	0	5.69531258274878						54	7	2	NaN	NaN	NaN	6.7864E-10	1	23409	112.73	107.9	1	9456.7			2128	3137	1813	1847	2128	2128		
DADLTDTAQTR	11	Unmodified	_DADLTDTAQTR_			0	0	0	Q13630	Q13630	Q13630	TSTA3	GDP-L-fucose synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.783481	1205.55241	1.42	0.00085736	2.0734	0.0012519	3.4934	0.0021093	603.785090609533	4.1307	0.18612	4.1307	4.0953	4.2815	0	624	31	0.906433495720521	0.020293211090572	0.906433495720521	367.211435216729	0	8.22112069435553						293	22	3	NaN	NaN	NaN	0.00077909	1	9612	74.424	65.031	1	90954			2129	1697	1814	1848	2129	2129		
DADPHFHHFLLSQTEK	16	Unmodified	_DADPHFHHFLLSQTEK_			0	0	0	Q49A26	Q49A26	Q49A26	GLYR1	Putative oxidoreductase GLYR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.31123	1920.91186	0.59755	0.00038322	0.73158	0.00046917	1.3291	0.00085238	641.64585958972	7.3851	0.10639	7.3851	7.3585	7.4649	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	526.353445463462	0	11.0815073344245						241	13	4	NaN	NaN	NaN	4.4041E-07	1	30082	77.696	68.54	1	62552			2130	1938	1815	1849	2130	2130		
DADPILISLR	10	Unmodified	_DADPILISLR_			0	0	0	Q9BR76	Q9BR76	Q9BR76	CORO1B	Coronin-1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.819138	1111.62372	0.2335	0.00013002	-0.82391	-0.00045877	-0.59041	-0.00032875	556.818784919641	14.205	0.18622	14.205	14.09	14.276	0	639	61	0.896281965493857	0.0406371291236521	0.896281965493857	363.44589751687	0	16.4785172919514						439	22	4	NaN	NaN	NaN	0.017881	1	7043	41.796	27.801	1	171160			2131	2702	1816	1850	2131	2131		
DADSQNPDAPEGK	13	Unmodified	_DADSQNPDAPEGK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.289128	1342.5637	1.7363	0.0011673	-1.9194	-0.0012904	-0.18318	-0.00012315	672.287658210007	2.171	0.097557	2.171	2.1532	2.2508	0	603	22	0.920633820089869	0.0141944207177085	0.920633820089869	372.533165706442	0	5.7437521519912						87	12	2	NaN	NaN	NaN	2.0231E-07	1	13677	128.97	117.62	1	15573			2132	1241	1817	1851	2132	2132		
DADSSISVLEIHSQK	15	Unmodified	_DADSSISVLEIHSQK_			0	0	0	Q96T23	Q96T23	Q96T23	RSF1	Remodeling and spacing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.909941	1627.80533	1.5925	0.0012978	0.79516	0.00064799	2.3877	0.0019458	814.910249815743	9.4874	0.088649	9.4874	9.443	9.5317	0	246	34	1.1599488233373	0.0219391257106372	1.1599488233373	468.532607799268	0	8.86176663593352						186	11	3	NaN	NaN	NaN	9.7085E-12	1	22410	154.09	150.8	1	42272			2133	2627	1818	1852	2133	2133		
DADVQNFVSFISK	13	Unmodified	_DADVQNFVSFISK_			0	0	0	P42126	P42126	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.367181	1468.71981	0.22759	0.00016736	-0.24243	-0.00017828	-0.014837	-1.0911E-05	735.367062195487	16.847	0.23058	16.847	16.741	16.972	0	465	49	1.01360860968299	0.0322407656624188	1.01360860968299	409.796099201586	0	13.034755109138						857	27	5	NaN	NaN	NaN	2.0833E-07	1	17538	97.594	84.998	1	429860			2134	1041	1819	1853	2134	2134		
DAEAEGLSGTTLLPK	15	Unmodified	_DAEAEGLSGTTLLPK_			0	0	0	Q9UI14	Q9UI14	Q9UI14	RABAC1	Prenylated Rab acceptor protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.390853	1500.76715	0.84773	0.00063697	1.2043	0.00090491	2.052	0.0015419	751.391553666195	11.926	0.20396	11.926	11.784	11.988	0	285	25	1.13399579921816	0.015985375365998	1.13399579921816	458.37655668977	0	6.46150657939955						327	24	3	NaN	NaN	NaN	7.2202E-05	1	18552	88.734	60.406	1	73879			2135	3232	1820	1854	2135	2135		
DAEDALHNLDR	11	Unmodified	_DAEDALHNLDR_			0	0	0	O75494	O75494	O75494	SRSF10	Serine/arginine-rich splicing factor 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.796923	1267.57929	1.9205	0.0012191	1.5647	0.00099324	3.4851	0.0022123	634.798211096048	7.3231	0.17735	7.3231	7.2521	7.4294	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.609952496345	0	8.18362872985819						337	21	3	NaN	NaN	NaN	2.1251E-05	1	11432	92.445	74.975	1	119860			2136	339	1821	1855	2136	2136		
DAEDALHNLDRK	12	Unmodified	_DAEDALHNLDRK_			0	0	1	O75494	O75494	O75494	SRSF10	Serine/arginine-rich splicing factor 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.232028	1395.67426	-0.82954	-0.00038676	-0.049705	-2.3174E-05	-0.87924	-0.00040993	466.231719421847	5.78	0.14185	5.78	5.7445	5.8864	0	843	28	0.757518876820989	0.0184514415745468	0.757518876820989	459.6118184907	0	11.1951013702018						291	17	4	NaN	NaN	NaN	0.00019489	1	15313	74.849	67.709	1	109100			2137	339	1822	1856	2137	2137		
DAEDALHNLDRK	12	Unmodified	_DAEDALHNLDRK_			0	0	1	O75494	O75494	O75494	SRSF10	Serine/arginine-rich splicing factor 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.844404	1395.67426	1.8542	0.0012958	1.1275	0.00078796	2.9817	0.0020838	698.84406433288	5.78	0.14185	5.78	5.7445	5.8864	0	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	405.104425944085	0	8.15633172220862						242	17	3	NaN	NaN	NaN	0.03918	1	15314	47.361	36.574	1	63197			2138	339	1822	1856	2138	2138		
DAEDAMDAMDGAVLDGR	17	Unmodified	_DAEDAMDAMDGAVLDGR_			0	0	0	Q01130	Q01130	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.578548	1750.71381	-0.29634	-0.00017323	-0.93228	-0.00054499	-1.2286	-0.00071822	584.577861385866	14.187	0.062069	14.187	14.161	14.223	0	651	22	0.888155670855968	0.0142259494684417	0.888155670855968	537.801404711123	0	8.61418314213302						119	8	3	NaN	NaN	NaN	0.017458	1	25900	56.938	56.704	1	25100			2139	1514	1823	1857	2139	2139		
DAEDAMDAMDGAVLDGR	17	Unmodified	_DAEDAMDAMDGAVLDGR_			0	0	0	Q01130	Q01130	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.364183	1750.71381	2.3305	0.0020424	0.3565	0.00031243	2.687	0.0023548	876.364763950995	14.196	0.12413	14.196	14.152	14.276	0	360	55	1.08395544855938	0.0361060601880221	1.08395544855938	437.577487624148	0	14.5755059639016						677	15	5	NaN	NaN	NaN	1.864E-15	1	25902	158.02	157.78	1	292040			2140	1514	1823	1857	2140	2140		
DAEDAMDAMDGAVLDGR	17	Oxidation (M)	_DAEDAMDAM(Oxidation (M))DGAVLDGR_	DAEDAMDAM(1)DGAVLDGR	DAEDAM(-65)DAM(65)DGAVLDGR	0	1	0	Q01130	Q01130	Q01130	SRSF2	Serine/arginine-rich splicing factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.361641	1766.70873	2.3291	0.0020597	-0.49355	-0.00043648	1.8355	0.0016233	884.862699202667	9.514	0.17733	9.514	9.3898	9.5672	0	348	37	1.09197348738011	0.0240541201161169	1.09197348738011	440.782902924379	0	9.70961750867394						322	21	5	NaN	NaN	NaN	1.5806E-13	1	26305	141.88	141.67	2	68384			2141	1514	1823	1858	2141	2141	535	
DAEDWFFSK	9	Unmodified	_DAEDWFFSK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.750921	1143.48729	-0.50427	-0.00028882	0.49933	0.00028599	-0.0049369	-2.8276E-06	572.751346879021	14.808	0.38131	14.808	14.728	15.109	0	666	58	0.877991458330206	0.0386347449867347	0.877991458330206	355.907494968048	0	15.6611948516094						1313	44	5	NaN	NaN	NaN	9.0472E-07	1	7872	168.08	134.27	1	2162300		+	2142	36	1824	1859	2142	2142		
DAEEDDDTGGINLHK	15	Unmodified	_DAEEDDDTGGINLHK_			0	0	0	Q13206	Q13206	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.855363	1627.69617	3.1669	0.0025805	-1.8843	-0.0015355	1.2825	0.0010451	814.854350088804	5.0883	0.097529	5.0883	5.0529	5.1504	0	405	34	1.05384839605172	0.0221028774104899	1.05384839605172	425.676217681439	0	8.92791533509353						219	12	4	NaN	NaN	NaN	3.0603E-06	1	22390	84.309	82.008	1	43263			2143	1643	1825	1860	2143	2143		
DAEEDDDTGGINLHK	15	Unmodified	_DAEEDDDTGGINLHK_			0	0	0	Q13206	Q13206	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.572667	1627.69617	0.57965	0.00031508	1.8263	0.00099273	2.406	0.0013078	543.573485580859	5.0883	0.070911	5.0883	5.0617	5.1327	0	717	19	0.84338031290707	0.0122318267870473	0.84338031290707	510.991511781291	0	7.41108082095917						110	9	3	NaN	NaN	NaN	0.043432	1	22391	27.378	26.121	1	22206			2144	1643	1825	1860	2144	2144		
DAEEEGGDQAGQNIR	15	Unmodified	_DAEEEGGDQAGQNIR_			0	0	0	Q92620	Q92620	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.84533	1587.67611	2.253	0.0017908	-0.5101	-0.00040545	1.7429	0.0013854	794.844299206781	3.4567	0.079908	3.4567	3.4213	3.5012	0	477	31	1.0055473068722	0.0201644018514301	1.0055473068722	406.252559036242	0	8.1466478977103						118	10	2	NaN	NaN	NaN	3.7909E-06	1	21189	115.04	107.46	1	27112			2145	2421	1826	1861	2145	2145		
DAEGILEDLQSYR	13	Unmodified	_DAEGILEDLQSYR_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.865002	1507.71545	0.94305	0.00071187	0.60416	0.00045606	1.5472	0.0011679	754.866525776182	16.422	0.18623	16.422	16.369	16.555	0	420	43	1.04379886199097	0.028152295306344	1.04379886199097	421.89995989234	0	11.3790622821417						497	22	5	NaN	NaN	NaN	3.5675E-05	1	18723	112.93	98.47	1	387270			2146	3057	1827	1862	2146	2146		
DAELAGSPELLEFLGTR	17	Unmodified	_DAELAGSPELLEFLGTR_			0	0	0	Q53T59	Q53T59	Q53T59	HS1BP3	HCLS1-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.467623	1816.92069	0.67333	0.00061237	-0.28937	-0.00026317	0.38397	0.0003492	909.468498676228	19.109	0.133	19.109	19.02	19.153	0	294	58	1.12800004657306	0.0379783412948009	1.12800004657306	455.2272839408	0	15.3269294702012						401	16	5	NaN	NaN	NaN	0.00060866	1	27650	42.941	35.801	1	82515			2147	1954	1828	1863	2147	2147		
DAESIHQYLLQR	12	Unmodified	_DAESIHQYLLQR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.587924	1471.74194	-1.3534	-0.00066529	-2.0687	-0.001017	-3.4221	-0.0016822	491.586971644214	9.1504	0.062068	9.1504	9.1238	9.1858	0	828	22	0.767766820543916	0.0143411262073633	0.767766820543916	465.59364713076	0	8.69682965736712						82	8	2	NaN	NaN	NaN	0.035787	1	17644	23.836	22.192	1	19295			2148	1277	1829	1864	2148	2148		
DAESIHQYLLQR	12	Unmodified	_DAESIHQYLLQR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.878247	1471.74194	1.8432	0.0013582	-0.13662	-0.00010067	1.7066	0.0012576	736.878883517919	9.1592	0.16847	9.1592	9.0972	9.2656	0	426	52	1.03977710643793	0.0341778577956089	1.03977710643793	420.367814365529	0	13.8176454283123						439	20	4	NaN	NaN	NaN	1.17E-05	1	17646	97.277	94.976	1	161160			2149	1277	1829	1864	2149	2149		
DAFADAVQR	9	Unmodified	_DAFADAVQR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.743431	991.472308	0.25355	0.00012595	1.199	0.00059557	1.4525	0.00072152	496.743727891423	6.4806	0.23938	6.4806	6.3742	6.6136	0	708	43	0.849494101904619	0.0285171523419938	0.849494101904619	344.983967027819	0	11.5809636832326						480	28	3	NaN	NaN	NaN	0.0065529	1	4084	72.038	23.881	1	154620			2150	2446	1830	1865	2150	2150		
DAFDRNPELQNLLLDDFFK	19	Unmodified	_DAFDRNPELQNLLLDDFFK_			0	0	1	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.718214	2309.13281	0.64722	0.00049882	-0.74962	-0.00057775	-0.1024	-7.8925E-05	771.051853521459	19.88	0.079814	19.88	19.862	19.942	0	597	85	0.924688525662974	0.0567895384538171	0.924688525662974	558.858920029287	0	34.3221952565131						517	10	5	NaN	NaN	NaN	1.3129E-10	1	35711	129.53	102.06	1	265540			2151	1205	1831	1866	2151	2151		
DAFDTLFDHAPDK	13	Unmodified	_DAFDTLFDHAPDK_			0	0	0	Q9NVD7;Q9HBI1	Q9NVD7	Q9NVD7	PARVA;PARVB	Alpha-parvin;Beta-parvin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.896534	1490.66777	-2.2499	-0.0011202	1.281	0.0006378	-0.96891	-0.00048242	497.897515606749	13.425	0.070932	13.425	13.398	13.469	0	771	37	0.806643990516186	0.0245249645792073	0.806643990516186	489.111980304175	0	14.8708155434836						121	9	2	NaN	NaN	NaN	0.065091	1	18237	6.0277	4.771	1	22302			2152	3063	1832	1867	2152	2152		
DAFITQAQEQQIELLEIPEHSDIK	24	Unmodified	_DAFITQAQEQQIELLEIPEHSDIK_			0	0	0	Q69YN2	Q69YN2	Q69YN2	CWF19L1	CWF19-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	932.474778	2794.4025	0.61594	0.00057435	-1.0163	-0.00094772	-0.4004	-0.00037337	932.471341313927	16.794	0.2394	16.794	16.644	16.883	0	255	40	1.15396378101328	0.0259387539969269	1.15396378101328	696.702725775223	0	15.6604573819498						362	28	3	NaN	NaN	NaN	0.00027116	1	37885	49.872	35.681	1	169170			2153	2026	1833	1868	2153	2153		
DAFLGSFLYEYSR	13	Unmodified	_DAFLGSFLYEYSR_			0	0	0	CON__P02769	CON__P02769	CON__P02769			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.375006	1566.73546	1.0986	0.00086171	1.7944	0.0014075	2.893	0.0022692	784.877825295174	18.488	0.088731	18.488	18.452	18.541	0	372	22	1.07593298845566	0.0140402733373235	1.07593298845566	434.739404260966	0	5.67308571427878						169	11	3	NaN	NaN	NaN	0.0014449	1	20548	44.82	42.149	1	51246		+	2154	26	1834	1869	2154	2154		
DAFQNAYLELGGLGER	16	Unmodified	_DAFQNAYLELGGLGER_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.931208	1751.84786	1.4663	0.0012858	0.054036	4.7386E-05	1.5203	0.0013332	876.931737442161	16.803	0.16849	16.803	16.697	16.865	0	327	61	1.10599442759226	0.040057086970017	1.10599442759226	446.472042146567	0	16.1703974050578						748	20	5	NaN	NaN	NaN	8.9049E-09	1	25947	117.77	81.921	1	279830			2155	522	1835	1870	2155	2155		
DAFVAIVQSVK	11	Unmodified	_DAFVAIVQSVK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.834788	1175.65502	1.1523	0.00067853	-0.6449	-0.00037974	0.50743	0.00029879	588.834425139344	14.214	0.088675	14.214	14.169	14.258	0	534	61	0.967195187796614	0.0404461214700302	0.967195187796614	391.939776875465	0	16.3901185866685						326	11	3	NaN	NaN	NaN	0.00033565	1	8768	104.39	72.254	1	114610			2156	573	1836	1871	2156	2156		
DAGALQVSAMSMVNGFFSFSAALEK	25	Unmodified	_DAGALQVSAMSMVNGFFSFSAALEK_			0	0	0		REV__Q10570	REV__Q10570			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	645.313363	2577.22435	0.55434	0.00035772	-8.3147	-0.0053656	-7.7604	-0.0050079	645.558819990798	12.689	0.15964	12.689	12.618	12.777	0	630	31	0.902373728295776	0.0202988394656143	0.902373728295776	726.709362774383	0	16.3472807668896						349	19	5	NaN	NaN	NaN	0.073069	1	37148	7.4367	4.5312	1	103110	+		2157	3494	1837	1872	2157	2157		
DAGALQVSAMSMVNGFFSFSAALEK	25	Unmodified	_DAGALQVSAMSMVNGFFSFSAALEK_			0	0	0		REV__Q10570	REV__Q10570			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	645.313363	2577.22435	0.48677	0.00031412	-6.6142	-0.0042682	-6.1274	-0.0039541	645.559913614191	12.236	0.22171	12.236	12.157	12.378	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	729.978811886797	0	19.6140178731177						772	26	7	NaN	NaN	NaN	0.049216	1	37149	16.155	2.6304	1	366800	+		2158	3494	1837	1872	2158	2158		
DAGALQVSAMSMVNGFFSFSAALEK	25	Unmodified	_DAGALQVSAMSMVNGFFSFSAALEK_			0	0	0		REV__Q10570	REV__Q10570			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.082058	2577.22435	1.8565	0.0015967	-7.5194	-0.0064673	-5.6629	-0.0048706	860.41004256042	12.236	0.14191	12.236	12.192	12.334	0	474	100	1.00756305028564	0.0665104280844176	1.00756305028564	608.567445961721	0	40.1722565527585						1157	17	6	NaN	NaN	NaN	0.022444	1	37150	18.927	11.49	1	322370	+		2159	3494	1837	1872	2159	2159		
DAGALQVSAMSMVNGFFSFSAALEK	25	Unmodified	_DAGALQVSAMSMVNGFFSFSAALEK_			0	0	0		REV__Q10570	REV__Q10570			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.082058	2577.22435	1.6546	0.0014231	-6.8626	-0.0059024	-5.2081	-0.0044794	860.410610330435	12.689	0.062075	12.689	12.662	12.724	0	489	31	0.997481546940468	0.020167188996535	0.997481546940468	602.478222184204	0	12.1809693726699						214	8	4	NaN	NaN	NaN	0.017139	1	37151	5.5769	0	1	38470	+		2160	3494	1837	1872	2160	2160		
DAGEGGLSLAIEGPSK	16	Unmodified	_DAGEGGLSLAIEGPSK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.880652	1499.74675	0.94035	0.00070609	-0.41961	-0.00031508	0.52074	0.00039101	750.880306690305	11.598	0.22174	11.598	11.5	11.722	0	462	70	1.01562323939346	0.0463045233633073	1.01562323939346	410.531313166709	0	18.7170360469987						612	26	3	NaN	NaN	NaN	8.4103E-09	1	18518	153.52	145.96	1	161180			2161	792	1838	1873	2161	2161		
DAGEGLLAVQITDPEGK	17	Unmodified	_DAGEGLLAVQITDPEGK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.938699	1711.86284	2.2117	0.0018953	-0.12959	-0.00011105	2.0821	0.0017842	856.938173888815	14.409	0.19505	14.409	14.347	14.542	0	252	127	1.15595906938629	0.0839233894502702	1.15595906938629	466.727529376706	0	33.8847258976386						892	23	4	NaN	NaN	NaN	1.0685E-07	1	24824	124.24	112.75	1	200430			2162	792	1839	1874	2162	2162		
DAGEGLLAVQITDQEGK	17	Unmodified	_DAGEGLLAVQITDQEGK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.441605	1742.86866	1.8588	0.0016217	-0.18866	-0.0001646	1.6702	0.0014571	872.442144551444	13.3	0.17738	13.3	13.256	13.434	0	186	70	1.1997861197946	0.0457908805043117	1.1997861197946	484.353821977468	0	18.4857847728509						668	21	4	NaN	NaN	NaN	0.013608	1	25684	55.782	40.634	1	175240			2163	326	1840	1875	2163	2163		
DAGHPLYPFNDPY	13	Unmodified	_DAGHPLYPFNDPY_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.338424	1504.66229	1.2921	0.00097338	1.2858	0.00096862	2.5779	0.001942	753.339234397517	13.939	0.15961	13.939	13.859	14.019	0	468	61	1.01159370163332	0.0403065325213282	1.01159370163332	408.890287780217	0	16.2920643490152						653	19	4	NaN	NaN	NaN	0.002595	1	18645	58.889	53.191	1	166840			2164	698	1841	1876	2164	2164		
DAGIEPGPDTYLALLNAYAEK	21	Unmodified	_DAGIEPGPDTYLALLNAYAEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.038953	2220.09503	0.13485	9.9931E-05	-0.17685	-0.00013105	-0.041995	-3.112E-05	741.373059421074	19.72	0.079787	19.72	19.685	19.765	0	513	28	0.981336640919867	0.0181718123582917	0.981336640919867	593.237799310853	0	10.9852272129751						133	10	3	NaN	NaN	NaN	9.4652E-06	1	34892	53.773	48.157	1	24033			2165	1055	1842	1877	2165	2165		
DAGIEPGPDTYLALLNAYAEK	21	Unmodified	_DAGIEPGPDTYLALLNAYAEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1111.05479	2220.09503	0.85081	0.0009453	0.064911	7.212E-05	0.91573	0.0010174	1111.55674601229	19.729	0.16849	19.729	19.641	19.809	0	87	61	1.26527909472281	0.039619309957897	1.26527909472281	509.925931834838	0	15.967159841015						623	20	4	NaN	NaN	NaN	0.00029025	1	34893	47.844	40.197	1	133150			2166	1055	1842	1877	2166	2166		
DAGLHCLELGHTGEAGPHAMVR	22	Unmodified	_DAGLHCLELGHTGEAGPHAMVR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.703916	2327.08992	2.1247	0.0016503	-0.3499	-0.00027177	1.7748	0.0013785	777.038546019016	8.0502	0.10653	8.0502	8.0059	8.1124	0	432	25	1.035754240522	0.0160936862293779	1.035754240522	625.95542006237	0	9.72617801592116						268	13	5	NaN	NaN	NaN	2.9136E-08	1	35870	49.485	47.384	1	77338			2167	141	1843	1878	2167	2167		
DAGMQLQGYR	10	Unmodified	_DAGMQLQGYR_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.769123	1137.52369	1.0725	0.00061107	0.2124	0.00012102	1.2849	0.00073209	569.76948582286	6.7998	0.29261	6.7998	6.7466	7.0392	0	669	37	0.875957769340875	0.0244059657771015	0.875957769340875	355.105287765115	0	9.89395585472636						703	34	5	NaN	NaN	NaN	2.111E-10	1	7725	184.04	150.64	1	452990			2168	482	1844	1879	2168	2168		
DAGQCIDPYITVSVK	15	Unmodified	_DAGQCIDPYITVSVK_			0	0	0	Q96BJ3	Q96BJ3	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.411262	1664.80797	2.1093	0.001758	-2.941	-0.002451	-0.83163	-0.00069309	833.408431060463	12.715	0.097555	12.715	12.653	12.751	0	360	13	1.08395544855938	0.00802135444019658	1.08395544855938	437.754851122461	0	3.23941987047107						64	12	2	NaN	NaN	NaN	0.062375	1	23476	15.528	14.476	1	12427			2169	2482	1845	1880	2169	2169		
DAGQISGLNVLR	12	Unmodified	_DAGQISGLNVLR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.843676	1241.6728	0.92332	0.00057416	1.3714	0.00085278	2.2947	0.0014269	621.844527976033	11.864	0.27491	11.864	11.784	12.059	0	543	55	0.961130371139249	0.0364015060107022	0.961130371139249	389.241846132341	0	14.7420056914948						1162	32	5	NaN	NaN	NaN	8.5499E-12	1	10678	179.31	156.26	1	1107500			2170	1007	1846	1881	2170	2170		
DAGTIAGLNVLR	12	Unmodified	_DAGTIAGLNVLR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.340769	1198.66699	1.1333	0.00068036	0.27066	0.00016249	1.404	0.00084285	600.341143635137	13.247	0.2838	13.247	13.185	13.469	0	567	115	0.944945209309785	0.0768796457680128	0.944945209309785	382.838070281347	0	31.1472611742619						2571	33	5	NaN	NaN	NaN	3.8733E-11	1	9433	158.37	129.06	1	3416100			2171	640	1847	1882	2171	2171		
DAGTIAGLNVMR	12	Unmodified	_DAGTIAGLNVMR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.31898	1216.62341	0.73993	0.00045085	0.61387	0.00037404	1.3538	0.0008249	609.319697868627	11.722	0.33696	11.722	11.669	12.006	0	558	112	0.951016745717027	0.0748513093026004	0.951016745717027	385.233185457167	0	30.3204001907872						1715	39	5	NaN	NaN	NaN	1.4918E-16	1	9928	174.92	135.91	1	1077100			2172	638	1848	1883	2172	2172		
DAGTIAGLNVMR	12	Oxidation (M)	_DAGTIAGLNVM(Oxidation (M))R_	DAGTIAGLNVM(1)R	DAGTIAGLNVM(98)R	0	1	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.316437	1232.61832	1.5982	0.00098658	3.1983	0.0019743	4.7964	0.0029609	617.316426352877	8.8221	0.2308	8.8221	8.7245	8.9553	0	573	73	0.940896116921038	0.0485622378151689	0.940896116921038	381.0780791064	0	19.6684883388309						1091	27	6	NaN	NaN	NaN	0.00073924	1	10403	98.009	78.753	1	451600			2173	638	1848	1884	2173	2173	185	
DAGVIAGLNVLR	12	Unmodified	_DAGVIAGLNVLR_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.351137	1196.68772	0.2523	0.00015121	0.94151	0.00056429	1.1938	0.00071551	599.351576752936	14.79	0.30151	14.79	14.693	14.994	0	513	106	0.981336640919867	0.0707465068031221	0.981336640919867	397.589289679379	0	28.6630012722082						2413	35	5	NaN	NaN	NaN	0.00026044	1	9368	108.3	63.483	1	1815700			2174	618	1849	1885	2174	2174		
DAHALIYK	8	Unmodified	_DAHALIYK_			0	0	0	Q9NYK5	Q9NYK5	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.75581	929.497067	0.62936	0.00029313	-0.076287	-3.5531E-05	0.55307	0.0002576	465.756085663448	4.4854	0.15074	4.4854	4.4499	4.6007	0	714	25	0.845418525735192	0.0163045710776146	0.845418525735192	343.641929101412	0	6.62740889597865						180	18	3	NaN	NaN	NaN	0.018291	1	2869	36.57	20.988	1	42069			2175	3116	1850	1886	2175	2175		
DAHNALLDIQSSGR	14	Unmodified	_DAHNALLDIQSSGR_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.876236	1495.73792	1.722	0.0012896	-2.2232	-0.0016649	-0.50123	-0.00037536	748.875504313509	8.343	0.25721	8.343	8.2987	8.5559	0	456	64	1.01965166402748	0.0422722007685605	1.01965166402748	412.169774865372	0	17.0875251701368						572	30	4	NaN	NaN	NaN	1.3595E-05	1	18413	94.507	83.72	1	240750			2176	21	1851	1887	2176	2176		
DAHNALLDIQSSGR	14	Unmodified	_DAHNALLDIQSSGR_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.586583	1495.73792	-1.7565	-0.00087751	1.4257	0.00071225	-0.3308	-0.00016526	499.5875571444	8.352	0.062101	8.352	8.3164	8.3785	0	783	25	0.798467866007927	0.0163568017170922	0.798467866007927	484.139276198716	0	9.9177067498423						92	8	2	NaN	NaN	NaN	0.025427	1	18414	38.584	31.027	1	21180			2177	21	1851	1887	2177	2177		
DAHSIHGTNPQYLVEK	16	Unmodified	_DAHSIHGTNPQYLVEK_			0	0	0	Q8NAV1	Q8NAV1	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.635714	1807.88531	0.51942	0.00031354	1.0094	0.0006093	1.5288	0.00092285	603.636313718044	5.6913	0.15079	5.6913	5.6203	5.7711	0	708	28	0.849494101904619	0.018336272903194	0.849494101904619	514.263130345666	0	11.1003349887033						247	18	3	NaN	NaN	NaN	7.6012E-09	1	27427	117.77	106.8	1	59437			2178	2280	1852	1888	2178	2178		
DAHSQGEVVSCLEK	14	Unmodified	_DAHSQGEVVSCLEK_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.861937	1557.70932	2.5802	0.0020122	-1.7756	-0.0013847	0.8046	0.00062747	779.863123975876	5.7268	0.18619	5.7268	5.6736	5.8598	0	429	43	1.03776581230406	0.0281639553291928	1.03776581230406	419.338947377095	0	11.3804513905675						430	22	4	NaN	NaN	NaN	0.021157	1	20278	53.051	48.523	1	105530			2179	2441	1853	1889	2179	2179		
DAIAALGLLQK	11	Unmodified	_DAIAALGLLQK_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.837331	1111.66011	0.38901	0.00021662	0.38705	0.00021552	0.77606	0.00043214	556.83759755341	15.198	0.070959	15.198	15.171	15.242	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	381.536954547496	0	8.21188705259607						143	9	3	NaN	NaN	NaN	0.008014	1	7045	40.502	30.414	1	33418			2180	10	1854	1890	2180	2180		
DAIFIMTSNVASDEIAQHALQLR	23	Unmodified	_DAIFIMTSNVASDEIAQHALQLR_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.4356	2542.28497	1.6538	0.0014032	-0.019426	-1.6482E-05	1.6344	0.0013867	848.434596173578	18.337	0.079783	18.337	18.302	18.381	0	339	40	1.09798411722691	0.0260317206932301	1.09798411722691	663.230571672239	0	15.7243012226699						236	10	5	NaN	NaN	NaN	0.0062761	1	37000	31.905	31.691	1	52501			2181	2839	1855	1891	2181	2181		
DAIHFYNK	8	Unmodified	_DAIHFYNK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.250892	1006.48723	1.2518	0.00063122	1.0242	0.00051643	2.276	0.0011477	504.251394466338	5.6559	0.41692	5.6559	5.5494	5.9663	0	699	61	0.85560534332665	0.040738799082341	0.85560534332665	347.394833354965	0	16.5408601391684						960	48	5	NaN	NaN	NaN	0.0024816	1	4420	81.32	59.392	1	1067300			2182	934	1856	1892	2182	2182		
DAILLADLVDSCK	13	Unmodified	_DAILLADLVDSCK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.871242	1431.72793	1.0966	0.0007861	0.25899	0.00018567	1.3556	0.00097177	716.871586741014	17.184	0.15076	17.184	17.14	17.291	0	402	43	1.05585747106793	0.0281251167294885	1.05585747106793	426.979985897464	0	11.3735634530059						534	18	5	NaN	NaN	NaN	0.00013765	1	16450	97.175	86.924	1	255530			2183	1144	1857	1893	2183	2183		
DAINQGMDEELERDEK	16	Unmodified	_DAINQGMDEELERDEK_			0	0	1	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.282788	1890.82654	1.1894	0.00075082	0.72136	0.00045538	1.9107	0.0012062	631.283139466561	7.8197	0.15077	7.8197	7.7753	7.9261	0	630	37	0.902373728295776	0.0243619867259138	0.902373728295776	546.092919162421	0	14.7432355692316						438	18	5	NaN	NaN	NaN	2.6109E-07	1	29377	91.939	86.597	1	163120			2184	644	1858	1894	2184	2184		
DAINQGMDEELERDEK	16	Unmodified	_DAINQGMDEELERDEK_			0	0	1	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.420544	1890.82654	2.9763	0.0028168	-0.3237	-0.00030635	2.6526	0.0025105	946.421326386195	7.8285	0.14188	7.8285	7.7842	7.9261	0	264	64	1.14797626962532	0.0419298952729088	1.14797626962532	463.151891264061	0	16.9166478523899						590	17	4	NaN	NaN	NaN	0.0036518	1	29378	54.309	44.795	1	152480			2185	644	1858	1894	2185	2185		
DAIPENLPPLTADFAEDK	18	Unmodified	_DAIPENLPPLTADFAEDK_			0	0	0	CON__P02769	CON__P02769	CON__P02769			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.48347	1954.95239	1.7177	0.0016808	0.24649	0.00024118	1.9642	0.0019219	978.483737891508	16.111	0.20397	16.111	16.023	16.227	0	225	79	1.17390432875292	0.0518240894492035	1.17390432875292	473.499405242909	0	20.9034713736181						1127	24	4	NaN	NaN	NaN	0.00087095	1	30792	78.888	72.032	1	241520		+	2186	26	1859	1895	2186	2186		
DAITQALFLR	10	Unmodified	_DAITQALFLR_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.327131	1146.63971	-0.35281	-0.00020263	-2.2663	-0.0013016	-2.6191	-0.0015042	574.325765301273	15.943	0.22168	15.943	15.863	16.085	0	636	40	0.898312834727904	0.0264049676271125	0.898312834727904	364.133164560623	0	10.7033140911246						503	26	4	NaN	NaN	NaN	0.00051604	1	7980	76.572	55.914	1	243200			2187	3308	1860	1896	2187	2187		
DALDGPAAEAEPEHSFDGLR	20	Unmodified	_DALDGPAAEAEPEHSFDGLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.655502	2095.94468	1.3787	0.00096463	0.51874	0.00036294	1.8975	0.0013276	699.990226300757	10.773	0.16847	10.773	10.693	10.862	0	582	55	0.934820374997243	0.0364771975402507	0.934820374997243	565.325714846341	0	22.0593157001891						716	20	4	NaN	NaN	NaN	9.0158E-06	1	33249	73.262	72.643	1	209030			2188	1816	1861	1897	2188	2188		
DALLAHGTSFLLHDR	15	Unmodified	_DALLAHGTSFLLHDR_			0	0	0	Q9H9Y6	Q9H9Y6	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.961761	1664.86345	-0.31569	-0.00017551	-0.012354	-6.8682E-06	-0.32804	-0.00018238	556.295879096292	12.05	0.15076	12.05	11.997	12.148	0	648	31	0.890187667287968	0.0203213763976985	0.890187667287968	539.249895543908	0	12.3101010072995						325	18	5	NaN	NaN	NaN	2.4946E-08	1	23480	133.07	120.9	1	97898			2189	2941	1862	1898	2189	2189		
DALLLWCQMK	10	Unmodified	_DALLLWCQMK_			0	0	0	Q01082;P11277;O15020	Q01082;O15020	Q01082	SPTBN1;SPTB;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.322676	1276.6308	0.64871	0.00041473	-0.074363	-4.7542E-05	0.57435	0.00036719	639.322782332008	15.81	0.12415	15.81	15.757	15.881	0	555	55	0.953040030838688	0.0364166254573408	0.953040030838688	385.849157256414	0	14.7436873459262						337	15	2	NaN	NaN	NaN	0.0035559	1	11671	53.878	41.282	1	113750			2190	1511;137	1863	1899	2190	2190		
DALLSALSIQNYHLECNETK	20	Unmodified	_DALLSALSIQNYHLECNETK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.714363	2318.12126	1.075	0.00083178	0.64642	0.00050015	1.7215	0.0013319	774.049324101213	15.322	0.097539	15.322	15.287	15.384	0	444	64	1.02770517576159	0.0422897180004469	1.02770517576159	621.105238985411	0	25.5582690685861						458	12	4	NaN	NaN	NaN	1.4187E-05	1	35794	61.503	59.533	1	100280			2191	1511	1864	1900	2191	2191		
DALNENSQLQESQK	14	Unmodified	_DALNENSQLQESQK_			0	0	0	Q96PC5	Q96PC5	Q96PC5	MIA2	Melanoma inhibitory activity protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.381548	1602.74854	2.5289	0.0020291	-3.3693	-0.0027035	-0.84045	-0.00067436	802.379148323812	4.8755	0.079802	4.8755	4.8401	4.9199	0	435	37	1.03374239103424	0.0241405316442127	1.03374239103424	417.609739135473	0	9.75225666468526						187	10	3	NaN	NaN	NaN	8.1732E-08	1	21668	126.48	96.131	1	34568			2192	2595	1865	1901	2192	2192		
DALNIETAIK	10	Unmodified	_DALNIETAIK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.303321	1086.59209	0.77391	0.00042124	-1.2144	-0.00066103	-0.44054	-0.00023979	544.302756049511	11.03	0.34583	11.03	10.897	11.243	0	669	40	0.875957769340875	0.0264379622091019	0.875957769340875	355.304550080521	0	10.7237227598529						772	40	4	NaN	NaN	NaN	0.00020549	1	6386	109.88	60.552	1	602500			2193	558	1866	1902	2193	2193		
DALNLAQMQEQTLQLEQQSK	20	Unmodified	_DALNLAQMQEQTLQLEQQSK_			0	0	0	Q9NVI7;Q5T2N8	Q9NVI7	Q9NVI7	ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1158.57864	2315.14272	0.43055	0.00049883	-0.76482	-0.0008861	-0.33426	-0.00038727	1159.07953916645	15.402	0.12427	15.402	15.358	15.482	0	72	43	1.27517645957152	0.027703142560725	1.27517645957152	513.783478024455	0	11.1619194584561						446	15	5	NaN	NaN	NaN	1.5576E-05	1	35777	78.673	71.361	1	95932			2194	3068	1867	1903	2194	2194		
DALNQATSQVESK	13	Unmodified	_DALNQATSQVESK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.84407	1389.67359	1.5732	0.0010947	0.6829	0.00047519	2.2561	0.0015699	695.844794119068	6.6136	0.12416	6.6136	6.5693	6.6934	0	486	34	0.999498404980629	0.0221885084340552	0.999498404980629	404.305863911206	0	8.9754461103974						257	15	3	NaN	NaN	NaN	0.0002715	1	15132	108.24	86.2	1	135400			2195	3158	1868	1904	2195	2195		
DALPEYSTFDVNMK	14	Unmodified	_DALPEYSTFDVNMK_			0	0	0	P49406	P49406	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.376888	1628.73922	1.4767	0.0012041	2.8319	0.002309	4.3086	0.0035131	815.378767999199	13.442	0.097542	13.442	13.416	13.513	0	372	34	1.07593298845566	0.022069372225481	1.07593298845566	434.594381221034	0	8.91433320585918						251	12	4	NaN	NaN	NaN	0.068209	1	22428	31.04	23.901	1	45789			2196	1130	1869	1905	2196	2196		
DALQGFK	7	Unmodified	_DALQGFK_			0	0	0	P08579;P09012	P08579;P09012	P09012	SNRPB2;SNRPA	U2 small nuclear ribonucleoprotein B;U1 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	389.708328	777.402104	-1.5085	-0.00058786	-1.1522	-0.00044903	-2.6607	-0.0010369	389.707767765705	6.2234	0.088699	6.2234	6.1968	6.2855	0	885	19	0.728786607772777	0.0123275740709815	0.728786607772777	297.07655626145	0	5.02511052344551						71	11	2	NaN	NaN	NaN	0.071974	1	802	39.761	26.209	1	13472			2197	585;595	1870	1906	2197	2197		
DALSDLALHFLNK	13	Unmodified	_DALSDLALHFLNK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.264669	1455.77218	-1.2834	-0.00062405	1.8033	0.00087686	0.51989	0.00025281	486.265706663496	18.612	0.22166	18.612	18.568	18.789	0	750	76	0.820941264895493	0.0510759376995944	0.820941264895493	497.89078082396	0	30.976928058068						852	26	5	NaN	NaN	NaN	0.00025524	1	17132	90.263	80.175	1	849890			2198	1175	1871	1907	2198	2198		
DALSDLALHFLNK	13	Unmodified	_DALSDLALHFLNK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.893366	1455.77218	1.1234	0.00081883	0.98791	0.00072008	2.1113	0.0015389	728.894400001263	18.612	0.20394	18.612	18.541	18.745	0	396	55	1.05987478976334	0.0361508951957743	1.05987478976334	428.536809503094	0	14.6168108134141						707	24	5	NaN	NaN	NaN	4.4451E-24	1	17133	228.54	207.46	1	799270			2199	1175	1871	1907	2199	2199		
DALSSVQESQVAQQAR	16	Unmodified	_DALSSVQESQVAQQAR_			0	0	0	P02656	P02656	P02656	APOC3	Apolipoprotein C-III	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.929197	1715.84384	2.7956	0.0024012	-1.8428	-0.0015828	0.95281	0.00081839	858.928079075188	7.935	0.070919	7.935	7.9083	7.9793	-8.8818E-16	351	40	1.08996939197032	0.026056835587305	1.08996939197032	440.075485398244	0	10.5204555774698						184	9	3	NaN	NaN	NaN	0.002536	1	24933	47.915	36.943	1	36674			2200	494	1872	1908	2200	2200		
DALYFLDDTAK	11	Unmodified	_DALYFLDDTAK_			0	0	0	O14975	O14975	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.311343	1270.60813	0.86182	0.00054839	0.053441	3.4005E-05	0.91526	0.00058239	636.310837000453	14.471	0.070932	14.471	14.427	14.498	0	537	28	0.965173861991602	0.0181944515400058	0.965173861991602	390.781499790606	0	7.36660547976254						123	9	3	NaN	NaN	NaN	0.061143	1	11523	28.647	14.652	1	23814			2201	132	1873	1909	2201	2201		
DAMHEMEEMIETK	13	Unmodified	_DAMHEMEEMIETK_			0	0	0	P78316	P78316	P78316	NOP14	Nucleolar protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.891298	1592.65207	-3.2053	-0.0017049	1.358	0.00072229	-1.8474	-0.0009826	531.89210046874	14.781	0.070967	14.781	14.755	14.826	0	786	22	0.796423123669906	0.0143151894202939	0.796423123669906	482.630334935723	0	8.67496743784687						123	9	3	NaN	NaN	NaN	0.00012717	1	21342	51.531	51.17	1	25480			2202	1455	1874	1910	2202	2202		
DAMHEMEEMIETK	13	Unmodified	_DAMHEMEEMIETK_			0	0	0	P78316	P78316	P78316	NOP14	Nucleolar protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.333309	1592.65207	0.43704	0.00034846	1.0346	0.00082492	1.4716	0.0011734	797.334027589309	14.781	0.088717	14.781	14.755	14.843	0	393	37	1.0618830335572	0.0241039161855134	1.0618830335572	429.001237242118	0	9.73799329981335						283	11	4	NaN	NaN	NaN	0.00080684	1	21343	54.27	52.286	1	61316			2203	1455	1874	1910	2203	2203		
DAMQYASESK	10	Unmodified	_DAMQYASESK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.245146	1128.47574	1.535	0.00086767	0.8005	0.00045248	2.3355	0.0013201	565.245436660696	4.2105	0.25716	4.2105	4.1662	4.4233	0	672	52	0.873923798053065	0.0345631296490378	0.873923798053065	354.314746792851	0	14.0129225880443						481	30	3	NaN	NaN	NaN	0.00040417	1	7477	67.881	58.488	1	194870			2204	1503	1875	1911	2204	2204		
DANLYISGLPR	11	Unmodified	_DANLYISGLPR_			0	0	0	Q15717	Q15717	Q15717	ELAVL1	ELAV-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.827495	1217.64044	0.6547	0.00039925	0.052063	3.1749E-05	0.70676	0.000431	609.827276849476	12.192	0.13303	12.192	12.139	12.272	0	528	97	0.971237000454584	0.0647496851703352	0.971237000454584	393.420223310805	0	26.2282384084365						525	16	3	NaN	NaN	NaN	0.00016792	1	9958	99.855	82.46	1	136560			2205	1864	1876	1912	2205	2205		
DANSVTSSLR	10	Unmodified	_DANSVTSSLR_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.264727	1048.5149	0.14501	7.6167E-05	0.11133	5.8477E-05	0.25634	0.00013464	525.264544616193	5.2125	0.13304	5.2125	5.1681	5.3012	0	711	34	0.847456455381371	0.0224172293536435	0.847456455381371	343.900139431531	0	9.09697277238547						198	16	3	NaN	NaN	NaN	0.015703	1	5426	29.755	18.106	1	48048			2206	3463	1877	1913	2206	2206		
DAPPLLPSDTGQGYR	15	Unmodified	_DAPPLLPSDTGQGYR_			0	0	0	Q9NPF5	Q9NPF5	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.894094	1585.77364	1.6307	0.0012946	0.14894	0.00011824	1.7797	0.0014129	794.395452723266	10.232	0.18621	10.232	10.117	10.303	0	405	43	1.05384839605172	0.028132878019673	1.05384839605172	425.771163533283	0	11.3661208318509						250	22	2	NaN	NaN	NaN	0.070168	1	21129	10.021	4.6334	1	58140			2207	2989	1878	1914	2207	2207		
DAPQDFHPDR	10	Unmodified	_DAPQDFHPDR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.847626	1196.52105	-0.67874	-0.00027139	3.295	0.0013175	2.6162	0.0010461	399.848439528304	3.714	0.13297	3.714	3.6431	3.776	0	873	22	0.737001551771189	0.0143731452887093	0.737001551771189	447.89151666264	0	8.7348660624952						168	16	3	NaN	NaN	NaN	0.054222	1	9328	30.918	24.228	1	32569			2208	792	1879	1915	2208	2208		
DAQDVQASQAEADQQQTR	18	Unmodified	_DAQDVQASQAEADQQQTR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.948846	1987.88314	4.0489	0.0040285	-3.4886	-0.003471	0.56033	0.0005575	995.446219789358	3.8115	0.079804	3.8115	3.7849	3.8647	0	285	37	1.13399579921816	0.0239813645434503	1.13399579921816	457.348722209428	0	9.67185807773484						211	10	4	NaN	NaN	NaN	5.8723E-19	1	31404	173.15	167.13	1	40015			2209	3158	1880	1916	2209	2209		
DAQELYAAGENR	12	Unmodified	_DAQELYAAGENR_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.81003	1335.60551	1.8843	0.0012602	-0.77001	-0.00051499	1.1143	0.00074524	668.809390878679	5.9307	0.11533	5.9307	5.8953	6.0106	0	474	40	1.00756305028564	0.0262119132032216	1.00756305028564	407.730592263641	0	10.607176287065						347	14	3	NaN	NaN	NaN	0.017773	1	13450	44.598	32.002	1	88675			2210	1176	1881	1917	2210	2210		
DAQFYCELNYR	11	Unmodified	_DAQFYCELNYR_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.822083	1477.62961	1.5875	0.0011745	-0.29316	-0.00021688	1.2943	0.00095758	739.822119698856	11.092	0.097513	11.092	11.048	11.146	0	459	40	1.01763759082241	0.0261829569110703	1.01763759082241	411.401839429285	0	10.5850223419978						352	12	4	NaN	NaN	NaN	4.0111E-05	1	17807	72.922	70.443	1	128130			2211	1061	1882	1918	2211	2211		
DAQHYGGWEHR	11	Unmodified	_DAQHYGGWEHR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.534042	1354.5803	0.42701	0.00019324	0.33849	0.00015318	0.7655	0.00034642	452.534300914104	3.2617	0.32823	3.2617	3.2262	3.5544	0	855	34	0.749315378969369	0.022567485025674	0.749315378969369	454.769566484576	0	13.696509733844						657	38	5	NaN	NaN	NaN	0.00078624	1	14029	103.87	100.77	1	349810			2212	1771	1883	1919	2212	2212		
DAQHYGGWEHR	11	Unmodified	_DAQHYGGWEHR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.297424	1354.5803	2.3345	0.0015835	-0.59457	-0.0004033	1.7399	0.0011802	678.29714989023	3.2617	0.16847	3.2617	3.2351	3.4035	0	561	34	0.948993180460448	0.0222592210224549	0.948993180460448	383.974022785897	0	9.00634779685709						306	20	3	NaN	NaN	NaN	0.0045016	1	14030	57.293	54.19	1	75270			2213	1771	1883	1919	2213	2213		
DAQIGWIQTVEDLHER	16	Unmodified	_DAQIGWIQTVEDLHER_			0	0	0	Q9H2M9	Q9H2M9	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.473771	1908.93299	0.82188	0.00078529	1.7179	0.0016414	2.5398	0.0024267	955.976594081271	15.038	0.053128	15.038	15.021	15.074	0	141	22	1.2295923935727	0.0138943372710902	1.2295923935727	496.045694458407	0	5.60529344252967						116	7	3	NaN	NaN	NaN	0.0051756	1	29817	38.839	38.163	1	20122			2214	2870	1884	1920	2214	2214		
DAQPSFSAEDIAK	13	Unmodified	_DAQPSFSAEDIAK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.827889	1377.64122	1.4966	0.0010324	-0.18804	-0.00012972	1.3086	0.0009027	689.827786109165	8.9819	0.30166	8.9819	8.8665	9.1681	0	486	70	0.999498404980629	0.0464134218863773	0.999498404980629	404.340653857423	0	18.7762514274967						1172	35	5	NaN	NaN	NaN	0.005609	1	14728	73.655	50.602	1	304360			2215	835	1885	1921	2215	2215		
DAQQVEPEGQEK	12	Unmodified	_DAQQVEPEGQEK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.315145	1356.61574	2.1337	0.0014495	-0.21752	-0.00014776	1.9162	0.0013017	679.314905361513	2.6232	0.1064	2.6232	2.5966	2.703	0	564	25	0.946969335010767	0.0161941280103991	0.946969335010767	383.149342281214	0	6.55223909223173						85	13	2	NaN	NaN	NaN	0.0030634	1	14079	54.584	45.069	1	15365			2216	3422	1886	1922	2216	2216		
DASALLDPMECTDTAEEQR	19	Unmodified	_DASALLDPMECTDTAEEQR_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.46208	2150.90961	1.3213	0.0014223	0.62981	0.00067796	1.9511	0.0021003	1076.96349735693	13.345	0.070993	13.345	13.327	13.398	0	159	31	1.21767724410157	0.019866757562589	1.21767724410157	490.839847701671	0	8.00819453889193						162	9	3	NaN	NaN	NaN	0.00027137	1	34027	66.485	62.846	1	25154			2217	2735	1887	1923	2217	2217		
DASDDLDDLNFFNQK	15	Unmodified	_DASDDLDDLNFFNQK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.886663	1755.75877	2.0956	0.0018418	0.081518	7.1645E-05	2.1772	0.0019135	878.886172741269	16.581	0.20397	16.581	16.528	16.732	0	312	58	1.11600111266355	0.0380149492667927	1.11600111266355	450.50369956666	0	15.3457510832179						1105	24	6	NaN	NaN	NaN	5.9526E-70	1	26040	314.08	306.87	1	490250			2218	776	1888	1924	2218	2218		
DASESPGENCQHLLAR	16	Unmodified	_DASESPGENCQHLLAR_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.405031	1782.79551	2.2568	0.002014	-1.488	-0.0013279	0.76877	0.00068605	892.404084122262	5.4697	0.070859	5.4697	5.4254	5.4962	0	360	25	1.08395544855938	0.0160404989244494	1.08395544855938	437.515623061091	0	6.47440712666588						164	9	4	NaN	NaN	NaN	0.0034112	1	26746	32.759	30.622	1	28454			2219	1975	1889	1925	2219	2219		
DASESPGENCQHLLAR	16	Unmodified	_DASESPGENCQHLLAR_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.272446	1782.79551	-0.74357	-0.00044263	3.0498	0.0018154	2.3062	0.0013728	595.274057736217	5.4608	0.062042	5.4608	5.4342	5.4962	0	729	28	0.835224628594324	0.0183566683857203	0.835224628594324	505.678834285851	0	11.1138708712236						142	8	3	NaN	NaN	NaN	4.1047E-09	1	26747	131.54	124.34	1	30084			2220	1975	1889	1925	2220	2220		
DASIVGFFDDSFSEAHSEFLK	21	Unmodified	_DASIVGFFDDSFSEAHSEFLK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.53951	2347.06446	1.0685	0.0012551	-0.51523	-0.00060515	0.55332	0.0006499	1175.0406736368	19.667	0.044314	19.667	19.649	19.694	0	123	28	1.24149774378079	0.0178519070673964	1.24149774378079	500.173329831215	0	7.1921578967553						148	6	4	NaN	NaN	NaN	0.031009	1	36016	23.432	22.489	1	29133			2221	904	1890	1926	2221	2221		
DASIVGFFDDSFSEAHSEFLK	21	Unmodified	_DASIVGFFDDSFSEAHSEFLK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.362096	2347.06446	1.0907	0.00085445	0.74261	0.00058173	1.8334	0.0014362	783.697334462627	19.667	0.24828	19.667	19.632	19.88	0	489	73	0.997481546940468	0.0484146635728933	0.997481546940468	602.79497754027	0	29.2578004380704						1028	29	7	NaN	NaN	NaN	1.6425E-22	1	36018	190.06	164.35	1	931050			2222	904	1890	1926	2222	2222		
DASLMVTNDGATILK	15	Unmodified	_DASLMVTNDGATILK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.900531	1547.78651	2.8854	0.0022359	-1.4311	-0.001109	1.4543	0.0011269	774.899638976849	12.91	0.31036	12.91	12.83	13.141	0	399	64	1.0578662689527	0.0421789590923636	1.0578662689527	427.485253822919	0	17.0445769590862						1052	36	5	NaN	NaN	NaN	4.3681E-08	1	19980	121.96	89.824	1	555540			2223	1461	1891	1927	2223	2223		
DASLVVTTSGDHK	13	Unmodified	_DASLVVTTSGDHK_			0	0	0	Q13685	Q13685	Q13685	AAMP	Angio-associated migratory cell protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.335881	1328.65721	1.9263	0.0012817	0.36065	0.00023995	2.287	0.0015216	665.334661953488	4.5652	0.13299	4.5652	4.5386	4.6716	0	495	22	0.993446994398923	0.0141238631290448	0.993446994398923	402.039772486361	0	5.71581045696888						121	16	3	NaN	NaN	NaN	0.0019281	1	13246	40.533	32.532	1	28079			2224	1700	1892	1928	2224	2224		
DASNWSTDK	9	Unmodified	_DASNWSTDK_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.222528	1022.4305	0.2912	0.00014916	1.8563	0.00095084	2.1475	0.0011	512.223576741559	3.3947	0.22179	3.3947	3.3415	3.5633	0	738	28	0.829104889055312	0.0183617725733707	0.829104889055312	336.564251421013	0	7.45372066007337						211	26	2	NaN	NaN	NaN	0.01291	1	4784	46.447	32.799	1	50546			2225	434	1893	1929	2225	2225		
DASVAEAWLLGQEPYLSSR	19	Unmodified	_DASVAEAWLLGQEPYLSSR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.016371	2091.02728	-0.86196	-0.00060166	1.1102	0.00077496	0.24827	0.0001733	698.351266851542	18.355	0.053194	18.355	18.319	18.373	0	663	16	0.880024865079826	0.0101656231369728	0.880024865079826	532.196762672869	0	6.14768052441184						68	7	3	NaN	NaN	NaN	0.036256	1	33197	22.039	21.52	1	10551			2226	1511	1894	1930	2226	2226		
DASVAEAWLLGQEPYLSSR	19	Unmodified	_DASVAEAWLLGQEPYLSSR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.52092	2091.02728	1.5956	0.0016699	-0.73502	-0.00076921	0.8606	0.00090064	1047.02191308575	18.346	0.09752	18.346	18.311	18.408	0	162	43	1.21569043230068	0.0278134637281793	1.21569043230068	490.129011262283	0	11.2135335729122						396	12	4	NaN	NaN	NaN	8.4192E-11	1	33198	120.21	113.35	1	92705			2227	1511	1894	1930	2227	2227		
DATIASLEETNR	12	Unmodified	_DATIASLEETNR_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.325513	1318.63647	1.401	0.00092513	2.0245	0.0013368	3.4255	0.0022619	660.326938901428	8.21	0.15087	8.21	8.1036	8.2544	0	528	46	0.971237000454584	0.0303157001501234	0.971237000454584	393.082309091205	0	12.2694722412239						289	18	2	NaN	NaN	NaN	0.00043973	1	12926	76.85	71.699	1	93581			2228	301	1895	1931	2228	2228		
DATLLIHEATLEDGLEEEAVEK	22	Unmodified	_DATLLIHEATLEDGLEEEAVEK_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.07087	2424.19078	2.0503	0.0016588	-1.5441	-0.0012493	0.50619	0.00040955	809.403420507888	15.5	0.12425	15.5	15.455	15.579	0	381	40	1.06991323971056	0.0260963753447068	1.06991323971056	646.445664371537	0	15.7675296194685						250	15	4	NaN	NaN	NaN	4.3897E-09	1	36462	101.52	100.58	1	60705			2229	2691	1896	1932	2229	2229		
DATNVGDEGGFAPNILENK	19	Unmodified	_DATNVGDEGGFAPNILENK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.965976	1959.9174	2.29	0.0022464	-3.3773	-0.003313	-1.0873	-0.0010666	980.963918008586	12.786	0.15077	12.786	12.724	12.875	0	249	40	1.15795408347545	0.0259316233489852	1.15795408347545	467.057475896807	0	10.4594462942197						536	17	5	NaN	NaN	NaN	0.00020553	1	30910	84.266	81.876	1	133620			2230	544	1897	1933	2230	2230		
DATNVGDEGGFAPNILENK	19	Unmodified	_DATNVGDEGGFAPNILENK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.313076	1959.9174	0.6578	0.00043041	-0.31424	-0.00020561	0.34356	0.0002248	654.647096937036	13.141	0.14188	13.141	13.096	13.238	0	597	151	0.924688525662974	0.101522643812409	0.924688525662974	559.453685230939	0	61.4230799225264						1461	17	4	NaN	NaN	NaN	2.1214E-07	1	30911	171.14	167.63	1	546740			2231	544	1897	1933	2231	2231		
DATNVGDEGGFAPNILENK	19	Unmodified	_DATNVGDEGGFAPNILENK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.965976	1959.9174	2.236	0.0021934	0.9885	0.00096969	3.2245	0.0031631	981.468612958759	13.15	0.62075	13.15	12.963	13.584	0	243	124	1.16194328902838	0.0817507804123918	1.16194328902838	468.666496173379	0	32.9739430289692						3372	71	7	NaN	NaN	NaN	1.0042E-86	1	30913	328.81	304.06	1	4354700			2232	544	1897	1933	2232	2232		
DATNVGDEGGFAPNILENK	19	Unmodified	_DATNVGDEGGFAPNILENK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.965976	1959.9174	1.5555	0.0015259	2.0625	0.0020232	3.618	0.0035491	981.470280727635	14.01	0.20395	14.01	13.868	14.072	-1.7764E-15	240	61	1.16393748060522	0.0398701495436597	1.16393748060522	469.470844082841	0	16.0815104521234						406	24	3	NaN	NaN	NaN	1.9363E-10	1	30914	151.18	140.21	1	89354			2233	544	1897	1933	2233	2233		
DATSNEQQELFCQK	14	Unmodified	_DATSNEQQELFCQK_			0	0	0	Q15172	Q15172	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.375408	1696.73626	2.167	0.0018406	1.1887	0.0010096	3.3556	0.0028502	849.375515693116	7.8552	0.1064	7.8552	7.8108	7.9172	0	372	46	1.07593298845566	0.0300863062965449	1.07593298845566	434.447471709164	0	12.1484514777846						244	13	3	NaN	NaN	NaN	0.00013083	1	24393	108.24	93.096	1	51753			2234	1821	1898	1934	2234	2234		
DAVIEFLLDK	10	Unmodified	_DAVIEFLLDK_			0	0	0	Q9BY42	Q9BY42	Q9BY42	RTFDC1	Protein RTF2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.821347	1161.62814	-0.77429	-0.0004505	-0.9333	-0.00054302	-1.7076	-0.00099352	581.820694923036	17.912	0.10639	17.912	17.858	17.965	0	627	43	0.90440375274676	0.0284223196233265	0.90440375274676	366.545911953176	0	11.5192855342718						295	13	3	NaN	NaN	NaN	0.033835	1	8390	25.857	17.674	1	83234			2235	2794	1899	1935	2235	2235		
DAVITVPVFFNQAER	15	Unmodified	_DAVITVPVFFNQAER_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.449037	1704.88352	1.7108	0.0014601	-1.8302	-0.001562	-0.11938	-0.00010188	853.447616895535	17.397	0.19509	17.397	17.309	17.504	0	339	64	1.09798411722691	0.0420918249195401	1.09798411722691	443.334270127184	0	16.9954630365286						881	23	5	NaN	NaN	NaN	6.5662E-05	1	24636	49.097	16.548	1	541350			2236	3410	1900	1936	2236	2236		
DAVLLLFANK	10	Unmodified	_DAVLLLFANK_			0	0	0	P18085	P18085	P18085	ARF4	ADP-ribosylation factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.326599	1102.63865	-0.086508	-4.778E-05	-2.0505	-0.0011326	-2.137	-0.0011803	552.325513485148	16.44	0.27488	16.44	16.36	16.635	0	609	73	0.916577990479294	0.0487037344704411	0.916577990479294	371.713110589849	0	19.7515288664993						1141	32	4	NaN	NaN	NaN	3.2053E-05	1	6794	98.009	64.613	1	500850			2237	751	1901	1937	2237	2237		
DAVLLVFANK	10	Unmodified	_DAVLLVFANK_			0	0	0	P61204;P84077;P84085	P61204;P84085	P61204	ARF3;ARF1;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.318774	1088.623	0.048284	2.633E-05	-1.2991	-0.00070842	-1.2508	-0.00068209	545.318533467325	14.737	0.30148	14.737	14.648	14.95	0	615	85	0.912521036363781	0.0568525632578257	0.912521036363781	370.126636908208	0	23.0599045936311						1636	35	5	NaN	NaN	NaN	0.00028302	1	6441	94.806	64.244	1	872680			2238	1334;1483	1902	1938	2238	2238		
DAVSGMGVIVHIIEK	15	Unmodified	_DAVSGMGVIVHIIEK_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.288598	1566.84396	-0.72637	-0.0003801	-0.42566	-0.00022274	-1.152	-0.00060285	523.288373410712	16.342	0.1685	16.342	16.28	16.448	0	666	28	0.877991458330206	0.0183006625091034	0.877991458330206	532.13599078096	0	11.0917265581954						371	20	4	NaN	NaN	NaN	0.04126	1	20563	27.357	25.056	1	138570			2239	1142	1903	1939	2239	2239		
DAVSGMGVIVHIIEK	15	Unmodified	_DAVSGMGVIVHIIEK_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.429258	1566.84396	1.1542	0.00090543	1.5088	0.0011835	2.663	0.002089	784.430466333767	16.333	0.1685	16.333	16.28	16.448	0	270	34	1.14398322290989	0.0219662910275218	1.14398322290989	462.235371228394	0	8.87565174407911						488	20	5	NaN	NaN	NaN	7.5948E-12	1	20564	139.7	130.44	1	181890			2240	1142	1903	1939	2240	2240		
DAVSNTTNQLESK	13	Unmodified	_DAVSNTTNQLESK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.841527	1405.6685	2.1762	0.0015317	-0.92294	-0.0006496	1.2532	0.00088207	703.840926726275	5.9751	0.2306	5.9751	5.9041	6.1347	0	507	40	0.985374541851584	0.0262372893807942	0.985374541851584	398.547957985559	0	10.6120238159823						401	27	4	NaN	NaN	NaN	0.00047573	1	15637	97.175	54.006	1	128880			2241	2167	1904	1940	2241	2241		
DAVSPFSFSLLK	12	Unmodified	_DAVSPFSFSLLK_			0	0	0	Q8NB46	Q8NB46	Q8NB46	ANKRD52	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.853178	1309.6918	-0.2637	-0.00017295	-1.8788	-0.0012322	-2.1425	-0.0014052	655.851970207818	18.071	0.1064	18.071	18.036	18.142	0	558	28	0.951016745717027	0.0182120890547127	0.951016745717027	384.925972956962	0	7.37138029433817						175	13	3	NaN	NaN	NaN	0.018178	1	12646	25.613	14.911	1	36784			2242	2283	1905	1941	2242	2242		
DAVTYTEHAK	10	Unmodified	_DAVTYTEHAK_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.774928	1133.5353	2.3158	0.0013148	-1.3344	-0.00075764	0.98139	0.00055721	567.773894626744	4.0598	0.27489	4.0598	3.8824	4.1573	0	615	43	0.912521036363781	0.0284144382573517	0.912521036363781	369.943296376548	0	11.5194395906749						392	32	3	NaN	NaN	NaN	0.044243	1	7620	39.01	14.889	1	92159			2243	1397	1906	1942	2243	2243		
DAVTYTEHAK	10	Unmodified	_DAVTYTEHAK_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.852377	1133.5353	0.18412	6.9754E-05	0.77729	0.00029448	0.96141	0.00036423	378.852643009468	2.7208	0.22171	2.7208	2.6941	2.9158	0	867	25	0.741107305531458	0.0164207262913015	0.741107305531458	450.671387362966	0	9.98553305840306						281	26	3	NaN	NaN	NaN	0.052435	1	7621	24.121	15.358	1	66169			2244	1397	1906	1942	2244	2244		
DAVTYTEHAK	10	Unmodified	_DAVTYTEHAK_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.774928	1133.5353	2.9227	0.0016594	-0.17766	-0.00010087	2.745	0.0015586	567.774810860322	2.7208	0.66506	2.7208	2.5966	3.2617	0	636	217	0.898312834727904	0.14574804641441	0.898312834727904	364.18317319391	0	59.0874180775682						3309	76	5	NaN	NaN	NaN	1.2974E-06	1	7625	100.84	73.1	1	5284300			2245	1397	1906	1942	2245	2245		
DAVVYPILVEFTR	13	Unmodified	_DAVVYPILVEFTR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.419217	1520.82388	1.0542	0.00080268	-1.0914	-0.00083098	-0.037172	-2.8304E-05	761.418259398484	19.392	0.27489	19.392	19.242	19.516	0	453	55	1.02166545906632	0.0362308083382761	1.02166545906632	412.921340562626	0	14.643221825646						946	32	4	NaN	NaN	NaN	0.00028517	1	19167	84.309	72.954	1	476760			2246	3410	1907	1943	2246	2246		
DAYQVILDGVK	11	Unmodified	_DAYQVILDGVK_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.829703	1219.64485	0.38692	0.00023634	-8.6074	-0.0052577	-8.2205	-0.0050213	610.823916338328	13.655	0.12412	13.655	13.575	13.7	0	591	16	0.928742107665821	0.0101360618473447	0.928742107665821	376.19986929234	0	4.10575240493159						146	15	3	NaN	NaN	NaN	0.00088532	1	10010	68.49	46.104	1	82762			2247	2816	1908	1944	2247	2247		
DAYSGGAVNLYHVR	14	Unmodified	_DAYSGGAVNLYHVR_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.375872	1520.73719	2.8406	0.0021628	-0.42376	-0.00032264	2.4169	0.0018402	761.375812193044	8.1656	0.20402	8.1656	8.1124	8.3164	0	291	100	1.12999890578964	0.0660442047330436	1.12999890578964	456.706151675779	0	26.6927644173584						1012	24	5	NaN	NaN	NaN	7.563E-33	1	19158	219.93	210.67	1	581700			2248	875	1909	1945	2248	2248		
DAYSGGAVNLYHVR	14	Unmodified	_DAYSGGAVNLYHVR_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.919673	1520.73719	0.29737	0.00015104	2.3708	0.0012042	2.6682	0.0013552	507.920493840062	8.1745	0.13314	8.1745	8.1213	8.2544	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	531.044191003715	0	12.3299757502857						221	16	4	NaN	NaN	NaN	0.066255	1	19159	40.386	38.085	1	72043			2249	875	1909	1945	2249	2249		
DAYSSFGSR	9	Unmodified	_DAYSSFGSR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.219788	988.425024	-0.40631	-0.00020121	2.6618	0.0013182	2.2555	0.001117	495.221002383097	5.2657	0.13302	5.2657	5.2213	5.3544	0	726	31	0.837263974740672	0.0203892128493071	0.837263974740672	340.031586134201	0	8.28051438296399						251	16	3	NaN	NaN	NaN	0.0017759	1	4014	49.96	45.053	1	68820			2250	93	1910	1946	2250	2250		
DCAVIVTQK	9	Unmodified	_DCAVIVTQK_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.270967	1032.52738	1.34	0.00069312	0.40766	0.00021087	1.7476	0.000904	517.271898931001	4.6893	0.31034	4.6893	4.6273	4.9376	0	675	61	0.871889544407995	0.0407048667426549	0.871889544407995	353.886153137793	0	16.5214605427176						596	36	4	NaN	NaN	NaN	0.0075663	1	5063	48.157	36.091	1	193030			2251	1314	1911	1947	2251	2251		
DCDLDIVCR	9	Unmodified	_DCDLDIVCR_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.252448	1164.49034	0.76282	0.00044492	0.77947	0.00045463	1.5423	0.00089955	583.253085191891	8.831	0.1775	8.831	8.7955	8.973	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	371.469289118565	0	8.21984146133553						308	21	4	NaN	NaN	NaN	0.0025252	1	8450	84.368	69.833	1	80107			2252	1194	1912	1948	2252	2252		
DCDLQEDACYNCGR	14	Unmodified	_DCDLQEDACYNCGR_			0	0	0	P62633	P62633	P62633	CNBP	Cellular nucleic acid-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.324535	1774.63452	3.4228	0.0030406	-3.0206	-0.0026833	0.40225	0.00035733	888.322589149746	6.0195	0.16848	6.0195	5.9751	6.1436	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	436.721770666233	0	11.3337402317997						451	20	5	NaN	NaN	NaN	1.271E-07	1	26524	121.96	120.38	1	132350			2253	1393	1913	1949	2253	2253		
DCEDPNPLIR	10	Unmodified	_DCEDPNPLIR_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.78497	1227.55539	2.1501	0.0013219	-2.7107	-0.0016665	-0.56058	-0.00034464	614.782871914294	7.7221	0.29273	7.7221	7.6156	7.9083	0	612	40	0.914549654013882	0.0263647247275708	0.914549654013882	370.424280612761	0	10.6786265216997						432	34	4	NaN	NaN	NaN	0.0033403	1	10219	79.059	62.601	1	147940			2254	1423;1587	1914	1950	2254	2254		
DCEECIQLEPTFIK	14	Unmodified	_DCEECIQLEPTFIK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.407863	1780.80117	2.7885	0.0024857	0.060012	5.3495E-05	2.8486	0.0025392	891.408607887005	14.24	0.31919	14.24	14.143	14.462	-1.7764E-15	321	76	1.10999792833052	0.0500403506587732	1.10999792833052	448.030984580717	0	20.1979003763858						1601	37	5	NaN	NaN	NaN	8.9555E-33	1	26696	221.56	202.01	1	1199500			2255	934	1915	1951	2255	2255		
DCEVVMMIGLPGAGK	15	Unmodified	_DCEVVMMIGLPGAGK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.880229	1575.74591	1.6385	0.0012926	0.74951	0.00059127	2.3881	0.0018839	788.880647272017	16.191	0.21283	16.191	16.103	16.315	0	438	160	1.03173026378327	0.106393248683452	1.03173026378327	416.858056211678	0	42.9868972512239						1821	25	4	NaN	NaN	NaN	4.045E-06	1	20846	83.775	83.036	1	469880			2256	1509	1916	1952	2256	2256		
DCEVVMMIGLPGAGK	15	Oxidation (M)	_DCEVVMM(Oxidation (M))IGLPGAGK_	DCEVVM(0.01)M(0.99)IGLPGAGK	DCEVVM(-20)M(20)IGLPGAGK	0	1	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.877687	1591.74082	1.5124	0.0012052	0.048619	3.8743E-05	1.561	0.0012439	796.8781824598	14.125	0.15076	14.125	14.045	14.196	0	399	76	1.0578662689527	0.0502407735798889	1.0578662689527	427.380575367949	0	20.2973961356773						858	18	3	NaN	NaN	NaN	0.00050045	1	21316	72.922	71.08	2	206580			2257	1509	1916	1953	2257	2257	532	
DCFGCLR	7	Unmodified	_DCFGCLR_			0	0	0	O75531	O75531	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.194205	926.373857	-0.52273	-0.00024265	-1.4014	-0.00065052	-1.9241	-0.00089316	464.194226020449	6.7289	0.26599	6.7289	6.6757	6.9417	0	759	55	0.814815566123307	0.0367516509384889	0.814815566123307	331.218846066793	0	14.9393800523611						755	31	4	NaN	NaN	NaN	0.030532	1	2802	60.001	51.268	1	333560			2258	342	1917	1954	2258	2258		
DCFVVSEGANTMDIGR	16	Unmodified	_DCFVVSEGANTMDIGR_			0	0	0	Q9UJ83	Q9UJ83	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.892911	1769.77127	2.0278	0.0017964	2.5076	0.0022215	4.5354	0.0040179	886.395648107593	12.192	0.11523	12.192	12.13	12.245	0	321	31	1.10999792833052	0.0200175059687449	1.10999792833052	448.052549337155	0	8.08010028825674						233	14	4	NaN	NaN	NaN	0.00012985	1	26395	62.398	59.11	1	45366			2259	3245	1918	1955	2259	2259		
DCGATWVVLGHSER	14	Unmodified	_DCGATWVVLGHSER_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.584185	1585.73072	-1.1614	-0.00061508	-0.15236	-8.069E-05	-1.3138	-0.00069577	529.584162449364	10.702	0.10641	10.702	10.631	10.738	0	759	22	0.814815566123307	0.0142952858953773	0.814815566123307	493.794669719906	0	8.66323162043182						133	13	3	NaN	NaN	NaN	0.063782	1	21119	13.778	13.568	1	25013			2260	1303	1919	1956	2260	2260		
DCGATWVVLGHSER	14	Unmodified	_DCGATWVVLGHSER_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.584185	1585.73072	1.04	0.00055078	-0.25087	-0.00013286	0.78915	0.00041792	529.584227219414	9.8332	0.49656	9.8332	9.7622	10.259	0	708	61	0.849494101904619	0.0407501192915529	0.849494101904619	514.810562386214	0	24.6953943326438						1772	57	6	NaN	NaN	NaN	1.0674E-11	1	21120	207.67	206.62	1	3130300			2261	1303	1919	1956	2261	2261		
DCGATWVVLGHSER	14	Unmodified	_DCGATWVVLGHSER_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.872639	1585.73072	3.2969	0.0026173	-0.37726	-0.00029949	2.9197	0.0023178	793.872775101931	9.8332	0.30147	9.8332	9.7711	10.073	0	300	106	1.12400150285141	0.070075837989872	1.12400150285141	454.114219631738	0	28.3117365974						1627	35	6	NaN	NaN	NaN	1.0889E-43	1	21122	300.29	285.15	1	1339700			2262	1303	1919	1956	2262	2262		
DCGGAAQLAGPAAEADPLGR	20	Unmodified	_DCGGAAQLAGPAAEADPLGR_			0	0	0	Q9Y508	Q9Y508	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.947063	1895.87957	2.3281	0.0022092	-1.0907	-0.001035	1.2373	0.0011742	948.946424530841	11.456	0.23947	11.456	11.323	11.562	0	291	37	1.12999890578964	0.0239846644495882	1.12999890578964	455.89006176508	0	9.67644313752373						494	28	3	NaN	NaN	NaN	5.5563E-11	1	29514	112.67	111.2	1	111090			2263	3420	1920	1957	2263	2263		
DCGSVDGVIK	10	Unmodified	_DCGSVDGVIK_			0	0	0	P61916	P61916	P61916	NPC2	Epididymal secretory protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.250231	1048.48591	0.60928	0.00032002	2.9306	0.0015393	3.5399	0.0018593	525.251941836384	5.78	0.23053	5.78	5.7091	5.9396	0	693	31	0.85967808974117	0.0203665630059481	0.85967808974117	348.859824227549	0	8.26480943874418						274	26	2	NaN	NaN	NaN	0.072387	1	5420	17.47	2.9346	1	77602			2264	1352	1921	1958	2264	2264		
DCHEEVYAGSHQYPGR	16	Unmodified	_DCHEEVYAGSHQYPGR_			0	0	0	Q9H3P7	Q9H3P7	Q9H3P7	ACBD3	Golgi resident protein GCP60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.604196	1903.79076	2.4163	0.0015358	1.9341	0.0012293	4.3503	0.0027651	636.275471697901	4.0686	0.11529	4.0686	4.0332	4.1484	0	573	19	0.940896116921038	0.0121489600135238	0.940896116921038	569.377438378412	0	7.3518676579281						201	14	4	NaN	NaN	NaN	0.019675	1	29681	35.845	31.029	1	40319			2265	2882	1922	1959	2265	2265		
DCIELFTTK	9	Unmodified	_DCIELFTTK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.776082	1125.53761	0.23078	0.00013011	0.54916	0.00030961	0.77994	0.00043971	563.77657120806	11.491	0.14202	11.491	11.438	11.58	0	624	34	0.906433495720521	0.0223271759310266	0.906433495720521	367.506725548394	0	9.0523875782327						324	17	4	NaN	NaN	NaN	0.050116	1	7401	37.591	34.451	1	58387			2266	3409	1923	1960	2266	2266		
DCIGGCSDLVSLQQSGELLTR	21	Unmodified	_DCIGGCSDLVSLQQSGELLTR_			0	0	0	P35754	P35754	P35754	GLRX	Glutaredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1154.54902	2307.08349	0.19281	0.00022261	2.3987	0.0027694	2.5915	0.002992	1155.05323794143	15.429	0.088763	15.429	15.384	15.473	0	72	40	1.27517645957152	0.0257261069079902	1.27517645957152	513.794178258232	0	10.3655645925393						203	11	3	NaN	NaN	NaN	1.5788E-05	1	35689	50.519	47.078	1	36686			2267	980	1924	1961	2267	2267		
DCLHGIEAK	9	Unmodified	_DCLHGIEAK_			0	0	0	Q8N684	Q8N684	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.752941	1041.49133	2.4541	0.0012804	1.0653	0.00055583	3.5194	0.0018363	521.753226733634	3.847	0.15961	3.847	3.8115	3.9711	4.4409E-16	642	40	0.894250814548268	0.0264086306406944	0.894250814548268	362.921132206306	0	10.7176308662134						212	19	2	NaN	NaN	NaN	0.0016852	1	5253	74.269	64.876	1	42418			2268	2262	1925	1962	2268	2268		
DCLINAAK	8	Unmodified	_DCLINAAK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.731477	903.448402	-0.52101	-0.00023588	-2.3661	-0.0010712	-2.8871	-0.0013071	452.732184573043	5.2657	0.33695	5.2657	5.1593	5.4962	0	756	55	0.816857749704129	0.036761875300818	0.816857749704129	332.172091232235	0	14.9490765077693						816	39	4	NaN	NaN	NaN	0.0094452	1	2387	63.301	53.908	1	275870			2269	747	1926	1963	2269	2269		
DCLIPMGITSENVAER	16	Unmodified	_DCLIPMGITSENVAER_			0	0	0	P09110	P09110	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.932036	1803.84952	1.5719	0.0014193	2.8263	0.0025519	4.3982	0.0039713	902.937064420287	14.116	0.15073	14.116	14.063	14.214	0	300	31	1.12400150285141	0.0199982246978856	1.12400150285141	453.638478941459	0	8.07113176491686						302	18	4	NaN	NaN	NaN	0.037126	1	27317	21.361	19.377	1	59428			2270	597	1927	1964	2270	2270		
DCLLELIEQK	10	Unmodified	_DCLLELIEQK_			0	0	0	Q5T6V5	Q5T6V5	Q5T6V5	C9orf64	UPF0553 protein C9orf64	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.828846	1259.64314	0.33934	0.00021406	-0.83918	-0.00052938	-0.49985	-0.00031532	630.828830930542	16.2	0.23057	16.2	16.103	16.333	0	552	31	0.955063035883597	0.0202314531592178	0.955063035883597	386.724002164932	0	8.19211742197365						322	27	4	NaN	NaN	NaN	2.8847E-07	1	11202	135.63	114.55	1	69787			2271	1994	1928	1965	2271	2271		
DCLSIPYR	8	Unmodified	_DCLSIPYR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.250034	1022.48552	-0.55457	-0.00028408	3.1089	0.0015925	2.5543	0.0013085	512.250869085061	9.2923	0.13304	9.2923	9.2479	9.381	0	702	37	0.853568545818287	0.0244398769037869	0.853568545818287	346.494698517516	0	9.92104010986554						241	16	3	NaN	NaN	NaN	0.018291	1	4790	53.679	50.221	1	50946			2272	1465	1929	1966	2272	2272		
DCLYEVFDDLESK	13	Unmodified	_DCLYEVFDDLESK_			0	0	0	Q9BPY3	Q9BPY3	Q9BPY3	FAM118B	Protein FAM118B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.858528	1631.7025	0.50669	0.00041389	1.9519	0.0015944	2.4586	0.0020083	816.860658367222	17.344	0.10641	17.344	17.309	17.415	0	387	25	1.06589869032374	0.0160604132229905	1.06589869032374	430.534703589103	0	6.4870754690379						208	13	4	NaN	NaN	NaN	3.5675E-05	1	22532	86.243	77.436	1	44403			2273	2689	1930	1967	2273	2273		
DCMEHAVLPVDGATLAEVMR	20	Unmodified	_DCMEHAVLPVDGATLAEVMR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.683241	2213.02789	0.70052	0.00051746	0.6891	0.00050903	1.3896	0.0010265	739.01790361581	16.085	0.088673	16.085	16.041	16.129	0	459	34	1.01763759082241	0.022160929987054	1.01763759082241	615.194659340033	0	13.3969950569793						262	11	5	NaN	NaN	NaN	0.00060291	1	34822	59.997	56.492	1	68390			2274	307	1931	1968	2274	2274		
DCPTGHLTVDEFK	13	Unmodified	_DCPTGHLTVDEFK_			0	0	0	P37235	P37235	P37235	HPCAL1	Hippocalcin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.901291	1517.68204	-0.79651	-0.00040375	-0.75362	-0.00038201	-1.5501	-0.00078576	506.901077163718	8.4672	0.15074	8.4672	8.414	8.5648	0	759	43	0.814815566123307	0.0285965426373002	0.814815566123307	493.986065401754	0	17.3367988644385						553	18	5	NaN	NaN	NaN	0.0024818	1	19059	64.906	62.235	1	213320			2275	999	1932	1969	2275	2275		
DCPTIIHFVLANINFR	16	Unmodified	_DCPTIIHFVLANINFR_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.004972	1928.99309	-0.035103	-2.2606E-05	-0.22445	-0.00014455	-0.25956	-0.00016716	644.005086647159	19.942	0.053212	19.942	19.924	19.978	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	560.743148748189	0	12.263843127123						137	7	5	NaN	NaN	NaN	0.035609	1	30271	22.142	22.006	1	39203			2276	1098	1933	1970	2276	2276		
DCPTIIHFVLANINFR	16	Unmodified	_DCPTIIHFVLANINFR_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.004972	1928.99309	-1.1761	-0.00075743	0.90258	0.00058127	-0.27353	-0.00017616	644.005690390465	19.951	0.017735	19.951	19.933	19.951	0	675	22	0.871889544407995	0.0142417532513394	0.871889544407995	527.568716824931	0	8.61749465438072						40	3	3	NaN	NaN	NaN	0.051816	1	30272	10.972	10.352	1	5396.1			2277	1098	1933	1970	2277	2277		
DCQIAHGAAQFLR	13	Unmodified	_DCQIAHGAAQFLR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.245503	1485.71468	-1.2772	-0.00063379	-2.339	-0.0011607	-3.6162	-0.0017945	496.244685070015	9.5583	0.19506	9.5583	9.5228	9.7179	0	765	64	0.810730346695089	0.042915717750498	0.810730346695089	491.604830300584	0	26.0229239326796						519	23	4	NaN	NaN	NaN	0.038494	1	18087	24.821	21.213	1	133540			2278	918	1934	1971	2278	2278		
DCTALLHLFHAAVQR	15	Unmodified	_DCTALLHLFHAAVQR_			0	0	0	Q8NFF5	Q8NFF5	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.638512	1750.89371	-0.50927	-0.00029774	-4.3699	-0.0025548	-4.8792	-0.0028526	584.969693864432	14.959	0.1153	14.959	14.914	15.03	0	663	31	0.880024865079826	0.0203383037367069	0.880024865079826	532.877574656934	0	12.3153633469997						225	14	4	NaN	NaN	NaN	2.1914E-05	1	25921	87.942	85.64	1	49800			2279	2316	1935	1972	2279	2279		
DCTSALALVPFSIK	14	Unmodified	_DCTSALALVPFSIK_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.402709	1520.79087	0.90351	0.00068794	1.5159	0.0011542	2.4194	0.0018422	761.404125415464	18.142	0.13301	18.142	18.098	18.231	0	396	73	1.05987478976334	0.0481613423106055	1.05987478976334	428.364285512511	0	19.4651285108994						472	16	4	NaN	NaN	NaN	1.9456E-08	1	19166	143.22	138.39	1	151720			2280	1867	1936	1973	2280	2280		
DCVDIEVFPAGENTEDQK	18	Unmodified	_DCVDIEVFPAGENTEDQK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.45458	2064.89461	1.6739	0.0017299	1.5322	0.0015834	3.206	0.0033133	1033.95720180082	12.423	0.062063	12.423	12.387	12.449	0	213	49	1.18187287897418	0.0318654545022787	1.18187287897418	476.534588106985	0	12.8482440931086						239	8	4	NaN	NaN	NaN	0.015085	1	32782	24.164	22.893	1	44234			2281	1927	1937	1974	2281	2281		
DCVGPEVEK	9	Unmodified	_DCVGPEVEK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.736957	1031.45936	1.7537	0.0009062	0.65053	0.00033615	2.4042	0.0012424	516.737574348815	3.7228	0.27485	3.7228	3.5898	3.8647	0	714	55	0.845418525735192	0.0366751040000942	0.845418525735192	343.146659423525	0	14.8860464238096						790	32	5	NaN	NaN	NaN	0.00013187	1	5027	100.84	83.441	1	648200			2282	484	1938	1975	2282	2282		
DCVLLQEDFLAHR	13	Unmodified	_DCVLLQEDFLAHR_			0	0	0	Q8IYS2	Q8IYS2	Q8IYS2	KIAA2013	Uncharacterized protein KIAA2013	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.398489	1614.78243	2.9428	0.002379	-0.073236	-5.9204E-05	2.8696	0.0023198	808.398728352659	13.549	0.070945	13.549	13.522	13.593	0	342	25	1.09598084995137	0.0160250356219411	1.09598084995137	442.724457649621	0	6.47335690660526						139	9	3	NaN	NaN	NaN	3.5675E-05	1	22039	86.243	75.992	1	26360			2283	2227	1939	1976	2283	2283		
DDAGWSPLHIAASAGR	16	Unmodified	_DDAGWSPLHIAASAGR_			0	0	0	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.933982	1622.78012	-0.76123	-0.00041254	-0.178	-9.6465E-05	-0.93923	-0.000509	541.933523226505	12.236	0.13302	12.236	12.183	12.316	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	511.004567622928	0	9.88032082943414						299	16	4	NaN	NaN	NaN	0.0013058	1	22263	61.042	57.059	1	79938			2284	365	1940	1977	2284	2284		
DDAGWSPLHIAASAGRDEIVK	21	Unmodified	_DDAGWSPLHIAASAGRDEIVK_			0	0	1	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.706308	2207.09709	1.2865	0.00094777	-0.092714	-6.8303E-05	1.1938	0.00087946	737.375686175041	12.999	0.21281	12.999	12.884	13.096	0	462	70	1.01562323939346	0.0463109185444219	1.01562323939346	613.987205737668	0	27.9969090597175						767	25	6	NaN	NaN	NaN	0.00089298	1	34753	60.324	58.222	1	199160			2285	365	1941	1978	2285	2285		
DDAHYAVQAR	10	Unmodified	_DDAHYAVQAR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.270344	1144.52613	1.1391	0.00065298	1.5851	0.00090872	2.7242	0.0015617	573.270943686306	2.8981	0.15963	2.8981	2.8715	3.0311	0	627	25	0.90440375274676	0.0162413229222488	0.90440375274676	366.610159825234	0	6.58360159852862						126	19	2	NaN	NaN	NaN	0.0052135	1	7907	58.426	53.519	1	24777			2286	2808	1942	1979	2286	2286		
DDALVITHYNR	11	Unmodified	_DDALVITHYNR_			0	0	0	O75312	O75312	O75312	ZPR1	Zinc finger protein ZPR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.833308	1315.65206	1.4237	0.00093796	0.16819	0.00011081	1.5919	0.0010488	658.833915469574	7.1811	0.19512	7.1811	7.128	7.3231	0	492	34	0.995464410099171	0.0221915758833877	0.995464410099171	402.897192508192	0	8.98166075054218						326	23	3	NaN	NaN	NaN	2.6161E-05	1	12839	104.39	88.515	1	102050			2287	317	1943	1980	2287	2287		
DDAMLLK	7	Unmodified	_DDAMLLK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	403.209847	804.40514	-1.738	-0.00070076	-0.18838	-7.5955E-05	-1.9263	-0.00077672	403.209757811395	7.2255	0.22168	7.2255	7.1545	7.3762	0	828	31	0.767766820543916	0.0204887515295875	0.767766820543916	312.784276221825	0	8.34701259078992						273	26	3	NaN	NaN	NaN	0.06995	1	1025	42.229	34.878	1	63913			2288	635	1944	1981	2288	2288		
DDANNDPQWSEEQLIAAK	18	Unmodified	_DDANNDPQWSEEQLIAAK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.46634	2042.91813	1.8246	0.0018656	0.25126	0.00025691	2.0759	0.0021225	1022.96799934615	11.811	0.20395	11.811	11.758	11.961	0	231	70	1.16991841121525	0.0458475287495643	1.16991841121525	471.748408967366	0	18.4871855467476						1149	24	5	NaN	NaN	NaN	9.0803E-46	1	32393	254.38	251.66	1	673110			2289	802	1945	1982	2289	2289		
DDAYWPEGK	9	Unmodified	_DDAYWPEGK_			0	0	0	Q14151	Q14151	Q14151	SAFB2	Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.735271	1079.45599	-0.41239	-0.00022299	0.97541	0.00052744	0.56303	0.00030445	540.735868620573	7.5536	0.079747	7.5536	7.527	7.6068	0	690	19	0.86171403876517	0.012214846484207	0.86171403876517	349.555951274418	0	4.95497588570862						85	10	2	NaN	NaN	NaN	0.048758	1	6191	36.211	33.612	1	13878			2290	1727	1946	1983	2290	2290		
DDDIAALVVDNGSGMCK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))DDDIAALVVDNGSGMCK_			1	0	0	P60709	P60709	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.403308	1820.79206	0.85156	0.00077611	-1.6152	-0.0014721	-0.76368	-0.00069602	911.903667570344	16.652	0.13302	16.652	16.573	16.706	0	183	43	1.20177511391933	0.0278554821353485	1.20177511391933	484.992900893539	0	11.2414635068885						319	16	4	NaN	NaN	NaN	4.8379E-05	1	27737	81.48	75.452	1	64902			2291	1310	1947	1984	2291	2291		
DDDIAALVVDNGSGMCK	17	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))DDDIAALVVDNGSGM(Oxidation (M))CK_	DDDIAALVVDNGSGM(1)CK	DDDIAALVVDNGSGM(57)CK	1	1	0	P60709	P60709	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.400766	1836.78698	1.2652	0.0011632	-1.6586	-0.0015249	-0.39341	-0.0003617	919.900820811727	16.599	0.14187	16.599	16.528	16.67	0	183	34	1.20177511391933	0.021878938463697	1.20177511391933	484.960973245225	0	8.82896572581137						288	17	4	NaN	NaN	NaN	0.00049823	1	28146	57.042	55.058	1	56827			2292	1310	1947	1985	2292	2292	461	
DDDIAALVVDNGSGMCK	17	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))DDDIAALVVDNGSGM(Oxidation (M))CK_	DDDIAALVVDNGSGM(1)CK	DDDIAALVVDNGSGM(200)CK	1	1	0	P60709	P60709	P60709	ACTB	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.400766	1836.78698	1.7615	0.0016195	0.66704	0.00061328	2.4286	0.0022328	919.402262687724	15.695	0.31918	15.695	15.633	15.952	0	180	88	1.203763835057	0.0577125695404581	1.203763835057	485.763487742985	0	23.2891687307213						823	37	2	NaN	NaN	NaN	4.0085E-19	1	28147	199.51	191.95	1	1416000			2293	1310	1947	1985	2293	2293	461	
DDDIEEGDLPEHK	13	Unmodified	_DDDIEEGDLPEHK_			0	0	0	Q14696	Q14696	Q14696	MESDC2	LDLR chaperone MESD	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.32845	1510.64235	2.5999	0.0019664	-1.0681	-0.00080782	1.5318	0.0011586	756.327598041587	5.6026	0.22172	5.6026	5.5494	5.7711	0	453	58	1.02166545906632	0.0382726935815298	1.02166545906632	412.946441582526	0	15.4694205270625						779	26	4	NaN	NaN	NaN	2.396E-05	1	18819	129.69	124.19	1	296130			2294	1770	1948	1986	2294	2294		
DDDSNFHMDFIVAASNLR	18	Unmodified	_DDDSNFHMDFIVAASNLR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.646061	2065.91635	0.12231	8.4348E-05	-1.2326	-0.00085008	-1.1103	-0.00076574	689.97928471022	16.431	0.21282	16.431	16.377	16.59	0	561	37	0.948993180460448	0.0242911943445451	0.948993180460448	573.95146994614	0	14.6913244350549						724	25	5	NaN	NaN	NaN	0.0016095	1	32799	93.649	92.633	1	257020			2295	804	1949	1987	2295	2295		
DDDSNFHMDFIVAASNLR	18	Unmodified	_DDDSNFHMDFIVAASNLR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.96545	2065.91635	1.1546	0.0011938	3.5742	0.0036956	4.7288	0.0048894	1034.46929098249	16.431	0.18622	16.431	16.36	16.546	0	171	55	1.20972836110953	0.0357945375856583	1.20972836110953	487.764381677818	0	14.4324139651474						499	22	3	NaN	NaN	NaN	0.02461	1	32801	28.432	27.557	1	159670			2296	804	1949	1987	2296	2296		
DDEAEWQELQQSIQR	15	Unmodified	_DDEAEWQELQQSIQR_			0	0	0	Q9UGP8	Q9UGP8	Q9UGP8	SEC63	Translocation protein SEC63 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.929394	1873.84423	1.6684	0.0015648	1.7524	0.0016436	3.4208	0.0032084	937.930225344014	14.169	0.09754	14.169	14.116	14.214	0	288	34	1.13199748998575	0.0219814046771438	1.13199748998575	456.735381671121	0	8.86899957261301						227	12	3	NaN	NaN	NaN	3.0163E-06	1	29016	93.772	87.567	1	47996			2297	3205	1950	1988	2297	2297		
DDEEADAIYAALDK	14	Unmodified	_DDEEADAIYAALDK_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.846475	1537.6784	2.2878	0.0017613	1.4601	0.0011241	3.7479	0.0028853	769.847624896274	14.48	0.1064	14.48	14.444	14.551	0	354	37	1.08796502040166	0.0240574350512286	1.08796502040166	439.673812212463	0	9.72220979781355						256	13	3	NaN	NaN	NaN	1.924E-11	1	19644	143.22	131.26	1	66364			2298	396	1951	1989	2298	2298		
DDEEEDPLDQLISR	14	Unmodified	_DDEEEDPLDQLISR_			0	0	0	Q9NYJ1	Q9NYJ1	Q9NYJ1	COA4	Cytochrome c oxidase assembly factor 4 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.378671	1672.74279	1.7	0.0014235	-0.59386	-0.00049729	1.1061	0.00092624	837.378133847561	16.032	0.17734	16.032	15.952	16.129	0	378	43	1.07192009927972	0.0280941036643514	1.07192009927972	432.877422547682	0	11.3453448546991						582	21	5	NaN	NaN	NaN	1.9637E-09	1	23683	130.99	128.69	1	245030			2299	3115	1952	1990	2299	2299		
DDEENYLDLFSHK	13	Unmodified	_DDEENYLDLFSHK_			0	0	0	Q07666	Q07666	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.24237	1623.70528	-1.3952	-0.00075653	-0.66369	-0.00035988	-2.0589	-0.0011164	542.241786281603	14.063	0.097546	14.063	14.028	14.125	0	756	25	0.816857749704129	0.0163363337922245	0.816857749704129	494.932150927418	0	9.89814545431267						175	12	3	NaN	NaN	NaN	0.001896	1	22291	48.822	43.672	1	46593			2300	1569	1953	1991	2300	2300		
DDEFTHLYTLIVRPDNTYEVK	21	Unmodified	_DDEFTHLYTLIVRPDNTYEVK_			0	0	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	642.820872	2567.25438	-0.69406	-0.00044616	-0.44075	-0.00028332	-1.1348	-0.00072948	643.07097241801	17.131	0.13301	17.131	17.06	17.193	0	660	40	0.882057989648486	0.0264306247374108	0.882057989648486	710.363227777218	0	21.2858384833833						441	16	5	NaN	NaN	NaN	1.2274E-05	1	37098	57.62	57.567	1	122950			2301	868	1954	1992	2301	2301		
DDEFTHLYTLIVRPDNTYEVK	21	Unmodified	_DDEFTHLYTLIVRPDNTYEVK_			0	0	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	642.820872	2567.25438	0.76585	0.00049231	0.81745	0.00052548	1.5833	0.0010178	643.072392917965	17.149	0.2926	17.149	17.043	17.335	0	537	94	0.965173861991602	0.0627305951013903	0.965173861991602	777.300385426183	0	50.5199297976314						2063	34	7	NaN	NaN	NaN	1.5998E-07	1	37100	148.62	137.97	1	1745100			2302	868	1954	1992	2302	2302		
DDEFTHLYTLIVRPDNTYEVK	21	Unmodified	_DDEFTHLYTLIVRPDNTYEVK_			0	0	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.758738	2567.25438	1.7003	0.0014568	1.1936	0.0010226	2.894	0.0024794	857.094564974812	17.149	0.2926	17.149	17.034	17.326	0	423	115	1.04178812298108	0.0763818574302719	1.04178812298108	629.252445998786	0	46.1355524772117						3534	34	7	NaN	NaN	NaN	4.5417E-23	1	37102	195.98	178.16	1	3819600			2303	868	1954	1992	2303	2303		
DDEVAQLK	8	Unmodified	_DDEVAQLK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.232364	916.450176	-0.21142	-9.7093E-05	3.6353	0.0016695	3.4239	0.0015724	459.233601667471	4.645	0.2926	4.645	4.5829	4.8755	0	759	52	0.814815566123307	0.0347219621408564	0.814815566123307	331.271228098792	0	14.116552896905						287	34	2	NaN	NaN	NaN	0.017139	1	2634	46.835	40.073	1	237460			2304	553	1955	1993	2304	2304		
DDFDFGTMGHVIR	13	Unmodified	_DDFDFGTMGHVIR_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.897881	1508.67181	-0.34145	-0.00017206	-0.25614	-0.00012907	-0.59758	-0.00030112	503.897839211043	12.946	0.079799	12.946	12.901	12.981	0	735	28	0.831145085810763	0.0183592202134729	0.831145085810763	503.913078848957	0	11.1309702012044						147	10	3	NaN	NaN	NaN	0.0033534	1	18745	35.33	34.18	1	39863			2305	1664	1956	1994	2305	2305		
DDGISFSNQTGPAWAGSER	19	Unmodified	_DDGISFSNQTGPAWAGSER_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.945575	1993.8766	1.2791	0.0012765	0.65119	0.00064985	1.9303	0.0019263	998.447857603321	11.979	0.16848	11.979	11.926	12.094	0	243	67	1.16194328902838	0.0438812859554019	1.16194328902838	468.610366013915	0	17.6972711722593						993	20	5	NaN	NaN	NaN	8.4016E-15	1	31517	133.93	111.53	1	378670			2306	776	1957	1995	2306	2306		
DDGLFSGDPNWFPK	14	Unmodified	_DDGLFSGDPNWFPK_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.862263	1593.70997	1.2312	0.00098231	1.0194	0.00081331	2.2505	0.0017956	797.863131787396	17.371	0.44338	17.371	17.14	17.583	0	414	73	1.04781950764076	0.0482344672999115	1.04781950764076	423.317143826323	0	19.4866356108948						2041	51	6	NaN	NaN	NaN	2.6901E-17	1	21380	223.96	208.81	1	1694000			2307	1001	1958	1996	2307	2307		
DDGNAAGTQPVSSDAPK	17	Unmodified	_DDGNAAGTQPVSSDAPK_			0	0	0		REV__Q8N6I1	REV__Q8N6I1			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.37118	1628.72781	1.0604	0.00086463	-8.0925	-0.0065984	-7.032	-0.0057337	815.364576458443	18.71	0.062036	18.71	18.674	18.736	0	258	28	1.15196821829984	0.0179625356920501	1.15196821829984	465.306851046354	0	7.25548742309161						169	8	4	NaN	NaN	NaN	0.07246	1	22425	13.778	3.5273	1	42709	+		2308	3500	1959	1997	2308	2308		
DDGNQPQDQITITGYEK	17	Unmodified	_DDGNQPQDQITITGYEK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.442334	1920.87011	2.3666	0.0022753	-0.65121	-0.0006261	1.7154	0.0016492	961.441780364077	9.5849	0.1862	9.5849	9.5228	9.709	0	279	49	1.13799159301878	0.0319663599333924	1.13799159301878	459.071255891384	0	12.8953826117204						681	22	5	NaN	NaN	NaN	8.4207E-05	1	30078	61.23	60.61	1	190760			2309	1498	1960	1998	2309	2309		
DDGSAVIWVTFK	12	Unmodified	_DDGSAVIWVTFK_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.340435	1336.66632	0.73806	0.00049401	0.45518	0.00030467	1.1932	0.00079869	669.340604240434	16.174	0.20395	16.174	16.12	16.324	0	474	46	1.00756305028564	0.0302403378372377	1.00756305028564	407.727273259654	0	12.2372594800219						522	24	3	NaN	NaN	NaN	4.5505E-11	1	13494	120.65	113.5	1	111880			2310	1715	1961	1999	2310	2310		
DDGSTLMEIDGDK	13	Unmodified	_DDGSTLMEIDGDK_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.300846	1394.58714	1.4919	0.0010418	0.59131	0.00041291	2.0832	0.0014547	698.301359644854	9.7268	0.19507	9.7268	9.6736	9.8686	0	513	28	0.981336640919867	0.0181718123582917	0.981336640919867	396.945492630344	0	7.35040220426993						345	23	4	NaN	NaN	NaN	0.0002422	1	15275	81.799	67.036	1	89206			2311	470	1962	2000	2311	2311		
DDGSWEVIEGYR	12	Unmodified	_DDGSWEVIEGYR_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.317688	1424.62082	1.6326	0.0011646	-0.46567	-0.00033217	1.167	0.00083241	713.317312062569	12.981	0.15075	12.981	12.919	13.07	0	525	49	0.973257487423603	0.0323255652803331	0.973257487423603	393.596028887221	0	13.0728140191908						545	18	4	NaN	NaN	NaN	8.1524E-12	1	16211	126.29	116.04	1	244060			2312	472	1963	2001	2312	2312		
DDGVFVQEVTQNSPAAR	17	Unmodified	_DDGVFVQEVTQNSPAAR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.942304	1831.87006	2.0752	0.0019029	-1.3808	-0.0012661	0.69449	0.00063681	917.442650404926	11.695	0.17731	11.695	11.58	11.758	0	327	64	1.10599442759226	0.0420280980154362	1.10599442759226	446.318879832705	0	16.9602424386392						1065	21	5	NaN	NaN	NaN	7.2273E-19	1	28019	178.51	164.73	1	364730			2313	1584	1964	2002	2313	2313		
DDGVSIPGEYTSFLAPISSSK	21	Unmodified	_DDGVSIPGEYTSFLAPISSSK_			0	0	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1085.53115	2169.04774	0.76634	0.00083189	1.068	0.0011594	1.8344	0.0019913	1086.0337973548	17.92	0.19505	17.92	17.841	18.036	0	141	97	1.2295923935727	0.0635213981718685	1.2295923935727	495.616191259307	0	25.6037965019715						1366	23	4	NaN	NaN	NaN	0.0009616	1	34295	51.577	46.761	1	278640			2314	115	1965	2003	2314	2314		
DDIAQVDYVEPSQNTISLK	19	Unmodified	_DDIAQVDYVEPSQNTISLK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.02877	2134.04299	1.2951	0.0013832	-0.51112	-0.00054589	0.78398	0.00083731	1068.52992749666	13.034	0.12413	13.034	12.963	13.088	0	159	52	1.21767724410157	0.0337758120573306	1.21767724410157	490.864741975417	0	13.6155581052715						455	15	5	NaN	NaN	NaN	1.4783E-14	1	33798	135.5	128.98	1	118970			2315	69	1966	2004	2315	2315		
DDIDLDALAAEIEGAGAAK	19	Unmodified	_DDIDLDALAAEIEGAGAAK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.457453	1856.90035	0.7798	0.00072479	1.3079	0.0012156	2.0877	0.0019404	929.459179830644	19.446	0.053215	19.446	19.428	19.481	0	150	40	1.22363604450103	0.0258143909113426	1.22363604450103	493.742573270054	0	10.4162212720391						131	7	2	NaN	NaN	NaN	4.8579E-07	1	28624	93.649	78.674	1	42131			2316	288	1967	2005	2316	2316		
DDIDLDALAAEIEGAGAAK	19	Unmodified	_DDIDLDALAAEIEGAGAAK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.457453	1856.90035	1.5051	0.0013989	0.9336	0.00086774	2.4387	0.0022667	929.458461763019	19.446	0.12416	19.446	19.392	19.516	0	291	43	1.12999890578964	0.0279821102463456	1.12999890578964	455.9595735957	0	11.2909056733253						363	15	5	NaN	NaN	NaN	1.0068E-10	1	28625	148.69	118.62	1	145080			2317	288	1967	2005	2317	2317		
DDIENMVK	8	Unmodified	_DDIENMVK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.226225	962.437897	0.097342	4.6941E-05	1.1649	0.00056173	1.2622	0.00060867	482.22701590766	7.456	0.24827	7.456	7.4028	7.6511	0	726	100	0.837263974740672	0.0673546691488739	0.837263974740672	340.157575752027	0	27.3643697381787						830	29	3	NaN	NaN	NaN	0.0024102	1	3484	105.81	79.585	1	563200			2318	1007	1968	2006	2318	2318		
DDIIENAPTTHTEEYSGEEK	20	Unmodified	_DDIIENAPTTHTEEYSGEEK_			0	0	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.004637	2276.99208	1.211	0.00092034	0.9886	0.00075134	2.1996	0.0016717	760.339790975267	7.128	0.079797	7.128	7.0925	7.1723	8.8818E-16	573	28	0.940896116921038	0.0182247029861181	0.940896116921038	568.702359601228	0	11.0154898132147						206	10	4	NaN	NaN	NaN	0.00057291	1	35438	38.668	37.299	1	49724			2319	115	1969	2007	2319	2319		
DDIIICEIGDVFK	13	Unmodified	_DDIIICEIGDVFK_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.884349	1535.75415	1.1189	0.00086034	-0.14062	-0.00010812	0.97833	0.00075222	768.884650335925	19.614	0.097555	19.614	19.579	19.676	0	405	49	1.05384839605172	0.0321562992894993	1.05384839605172	425.891200495168	0	12.9953083946381						321	12	5	NaN	NaN	NaN	9.9455E-05	1	19603	65.879	56.617	1	90520			2320	3421	1970	2008	2320	2320		
DDIINIFSVASGHLYER	17	Unmodified	_DDIINIFSVASGHLYER_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.33029	1947.96904	0.10841	7.0501E-05	-0.40238	-0.00026168	-0.29397	-0.00019118	650.33035624801	18.302	0.05321	18.302	18.284	18.337	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	571.733986067837	0	9.79816953095201						83	7	3	NaN	NaN	NaN	0.020522	1	30680	43.518	41.808	1	14126			2321	3121	1971	2009	2321	2321		
DDITASLVTTDHSEMK	16	Unmodified	_DDITASLVTTDHSEMK_			0	0	0	Q9H3S7	Q9H3S7	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.911824	1761.80909	1.6869	0.0014877	0.36472	0.00032165	2.0516	0.0018093	881.912503429154	9.3189	0.079846	9.3189	9.2923	9.3721	0	231	22	1.16991841121525	0.013953587802001	1.16991841121525	472.256151783137	0	5.63258738025672						111	10	3	NaN	NaN	NaN	0.00013672	1	26185	59.731	57.747	1	20385			2322	2885	1972	2010	2322	2322		
DDIVPWHTSMQVADR	15	Unmodified	_DDIVPWHTSMQVADR_			0	0	0	Q9NUJ1	Q9NUJ1	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.614032	1768.82027	-1.4252	-0.00084175	-1.0455	-0.00061751	-2.4708	-0.0014593	590.613472299703	11.642	0.088679	11.642	11.607	11.695	0	744	31	0.82502364452135	0.0204090624710167	0.82502364452135	499.533183722739	0	12.357226390594						224	11	4	NaN	NaN	NaN	0.0031234	1	26372	54.199	49.048	1	47155			2323	3050	1973	2011	2323	2323		
DDLADYGGYDGGYVQDYEDFM	21	Unmodified	_DDLADYGGYDGGYVQDYEDFM_			0	0	0	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1204.4628	2406.91105	-0.23415	-0.00028203	0.57818	0.00069639	0.34402	0.00041436	1204.9652494406	19.277	0.03548	19.277	19.268	19.304	0	84	43	1.26725910986255	0.0277259137120367	1.26725910986255	510.477294944211	0	11.1685521306786						135	5	3	NaN	NaN	NaN	6.3278E-06	1	36382	69.201	69.136	1	20085			2324	363	1974	2012	2324	2324		
DDLDEEEDTHL	11	Unmodified	_DDLDEEEDTHL_			0	0	0	O00592	O00592	O00592	PODXL	Podocalyxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.767694	1329.52083	1.6998	0.0011316	0.77893	0.00051858	2.4787	0.0016502	665.768047235099	8.0325	0.16865	8.0325	7.9793	8.1479	0	531	40	0.969216233931596	0.0262736050362692	0.969216233931596	392.23116005102	0	10.6326392618239						390	20	4	NaN	NaN	NaN	0.0027001	1	13261	84.368	79.829	1	147430			2325	94	1975	2013	2325	2325		
DDLDVTELTNEDLLDQLVK	19	Unmodified	_DDLDVTELTNEDLLDQLVK_			0	0	0	P42167;P42166	P42167;P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1094.547	2187.07944	0.64117	0.00070179	1.1952	0.0013082	1.8364	0.00201	1095.05025291881	19.853	0.079795	19.853	19.836	19.915	0	99	52	1.25735632164274	0.033692561032673	1.25735632164274	506.780506168778	0	13.5798682047045						325	10	4	NaN	NaN	NaN	2.2984E-10	1	34546	99.668	94.326	1	81538			2326	1042;1043	1976	2014	2326	2326		
DDLGFITSSQSAAYAISK	18	Unmodified	_DDLGFITSSQSAAYAISK_			0	0	0	O43826	O43826	O43826	SLC37A4	Glucose-6-phosphate translocase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.462538	1872.91052	0.94176	0.00088287	-0.10241	-9.6001E-05	0.83936	0.00078686	937.460602477067	14.737	0.19511	14.737	14.666	14.861	0	228	34	1.17191150690002	0.0219180319547998	1.17191150690002	472.841523469264	0	8.84346263342871						281	23	4	NaN	NaN	NaN	4.0086E-05	1	29001	70.598	65.21	1	56772			2327	238	1977	2015	2327	2327		
DDLGNTLEK	9	Unmodified	_DDLGNTLEK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.748379	1003.4822	0.20661	0.00010387	3.0128	0.0015147	3.2194	0.0016185	502.749961302655	5.443	0.19503	5.443	5.3278	5.5228	0	678	58	0.869855008346864	0.038677676741416	0.869855008346864	353.194768477316	0	15.7046323247442						450	23	4	NaN	NaN	NaN	0.010077	1	4366	58.426	20.104	1	176080			2328	324	1978	2016	2328	2328		
DDLLGFALR	9	Unmodified	_DDLLGFALR_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.279649	1018.54475	-0.79411	-0.00040522	-0.30694	-0.00015663	-1.1011	-0.00056185	510.279657325998	16.324	0.25711	16.324	16.253	16.51	0	687	55	0.863749705078866	0.0366343767135493	0.863749705078866	350.645636606488	0	14.8719985302125						827	30	4	NaN	NaN	NaN	0.00026216	1	4710	105.04	72.913	1	641600			2329	3450	1979	2017	2329	2329		
DDLLLTDFEGALK	13	Unmodified	_DDLLLTDFEGALK_			0	0	0	Q9Y3P9	Q9Y3P9	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.377214	1448.73988	0.3317	0.00024061	0.81943	0.00059439	1.1511	0.000835	725.878736525096	18.816	0.12412	18.816	18.763	18.887	0	474	49	1.00756305028564	0.0322407656624188	1.00756305028564	407.40433671537	0	13.0364325549351						289	15	3	NaN	NaN	NaN	0.018244	1	16950	31.425	25.559	1	62008			2330	3397	1980	2018	2330	2330		
DDLSFAGYQK	10	Unmodified	_DDLSFAGYQK_			0	0	0	Q6IBS0	Q6IBS0	Q6IBS0	TWF2	Twinfilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.269478	1142.5244	0.87107	0.00049849	2.6424	0.0015122	3.5135	0.0020107	572.270678007627	8.8044	0.18645	8.8044	8.7511	8.9375	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	371.552867313228	0	8.22169087265939						267	22	3	NaN	NaN	NaN	0.0057322	1	7850	65.156	46.82	1	84761			2331	2037	1981	2019	2331	2331		
DDNFGEGNDGGILDDK	16	Unmodified	_DDNFGEGNDGGILDDK_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.85282	1679.69109	2.2379	0.0018818	2.2241	0.0018702	4.462	0.0037519	840.853244396933	9.9928	0.22165	9.9928	9.8864	10.108	0	372	46	1.07593298845566	0.030094602206975	1.07593298845566	434.483184878689	0	12.1528001788585						489	26	4	NaN	NaN	NaN	6.0349E-07	1	23897	131.06	125.68	1	135820			2332	246	1982	2020	2332	2332		
DDNMFQIGK	9	Unmodified	_DDNMFQIGK_			0	0	0	P53999	P53999	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.244949	1066.47534	0.76931	0.000411	0.71523	0.00038211	1.4845	0.00079311	534.24534789415	10.09	0.28373	10.09	9.9928	10.277	0	684	61	0.86578508874114	0.0407161728105105	0.86578508874114	351.261242190283	0	16.5191265414948						1050	33	5	NaN	NaN	NaN	3.6215E-06	1	5870	158.61	133.76	1	719090			2333	1248	1983	2021	2333	2333		
DDPENDNSELPTAK	14	Unmodified	_DDPENDNSELPTAK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.839182	1543.66381	2.0301	0.001569	-0.44365	-0.00034287	1.5865	0.0012261	772.838736799145	5.2036	0.17738	5.2036	5.1415	5.3189	0	522	70	0.975277694896658	0.0464198396417231	0.975277694896658	394.120422509723	0	18.7587667678262						399	21	3	NaN	NaN	NaN	5.1986E-12	1	19839	149.58	145.85	1	107100			2334	2452	1984	2022	2334	2334		
DDPITLFVALSPQGTAQGELFLDDGHTFNYQTR	33	Unmodified	_DDPITLFVALSPQGTAQGELFLDDGHTFNYQTR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1222.92855	3665.76381	1.1733	0.0014349	0.45958	0.00056203	1.6329	0.0019969	1223.2627248828	20.004	0.0088765	20.004	19.995	20.004	0	252	28	1.15595906938629	0.0179526604527893	1.15595906938629	697.085167156636	0	10.8261041796948						54	2	3	NaN	NaN	NaN	0.019596	1	38705	4.9513	4.9225	1	8790.2			2335	1771	1985	2023	2335	2335		
DDPPPPEDDENK	12	Unmodified	_DDPPPPEDDENK_			0	0	0	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.283511	1366.55247	2.2961	0.0015712	-1.7368	-0.0011885	0.55931	0.00038273	684.282404591292	2.5079	0.39905	2.5079	2.4104	2.8094	0	588	58	0.93076847747433	0.0385223886252621	0.93076847747433	376.566765193258	0	15.5852412530082						790	46	2	NaN	NaN	NaN	0.00028168	1	14380	78.932	72.241	1	193720			2336	1431	1986	2024	2336	2336		
DDPVTNLNNAFEVAEK	16	Unmodified	_DDPVTNLNNAFEVAEK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.425955	1774.83736	2.7461	0.0024398	-0.71371	-0.00063408	2.0324	0.0018057	888.425425511982	14.471	0.25712	14.471	14.329	14.586	0	330	67	1.10399226369747	0.0440628000558998	1.10399226369747	445.618475713198	0	17.7856298836766						953	30	3	NaN	NaN	NaN	9.7611E-07	1	26538	135.13	132.83	1	294400			2337	221	1987	2025	2337	2337		
DDQFLLDGQLLPDNFIAACTEK	22	Unmodified	_DDQFLLDGQLLPDNFIAACTEK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.740578	2522.1999	0.70389	0.00059249	0.54371	0.00045766	1.2476	0.0010502	842.410082678712	19.818	0.026601	19.818	19.809	19.836	0	510	31	0.983355730988811	0.0201922993273106	0.983355730988811	594.015711127259	0	12.197562556681						76	4	4	NaN	NaN	NaN	0.027268	1	36929	9.1553	9.0906	1	9553.2			2338	634	1988	2026	2338	2338		
DDQHFTVTGLHK	12	Unmodified	_DDQHFTVTGLHK_			0	0	0	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.565119	1396.67353	-0.86362	-0.00040293	-0.488	-0.00022768	-1.3516	-0.00063062	466.564873403077	5.5405	0.097528	5.5405	5.5139	5.6115	0	825	25	0.769815552739974	0.016388717253182	0.769815552739974	467.069347801051	0	9.94350848264185						211	12	4	NaN	NaN	NaN	0.0040058	1	15336	56.202	54.043	1	59101			2339	627	1989	2027	2339	2339		
DDQLLDDGK	9	Unmodified	_DDQLLDDGK_			0	0	0	Q15370	Q15370	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.738011	1017.46147	0.20707	0.00010555	2.5246	0.0012869	2.7317	0.0013925	509.739180294382	5.4076	0.31028	5.4076	5.3278	5.6381	0	699	37	0.85560534332665	0.0244398769037869	0.85560534332665	347.344289082912	0	9.92169080596636						324	36	2	NaN	NaN	NaN	0.00013053	1	4672	98.009	77.35	1	195640			2340	1836	1990	2028	2340	2340		
DDQVTVIGAGVTLHEALAAAELLK	24	Unmodified	_DDQVTVIGAGVTLHEALAAAELLK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	812.111111	2433.3115	0.88562	0.00071922	-1.5985	-0.0012981	-0.71286	-0.00057892	812.444189004569	19.978	0.070939	19.978	19.969	20.04	0	516	73	0.979317271586824	0.0484481440475263	0.979317271586824	591.694597567546	0	29.2719284411744						379	9	7	NaN	NaN	NaN	2.9422E-13	1	36499	147.08	138.67	1	201580			2341	888	1991	2029	2341	2341		
DDQVTVIGAGVTLHEALAAAELLK	24	Unmodified	_DDQVTVIGAGVTLHEALAAAELLK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	812.111111	2433.3115	1.9092	0.0015505	1.2263	0.00099586	3.1355	0.0025463	812.446724016572	19.986	0.1153	19.986	19.96	20.075	0	318	121	1.11199926528787	0.0801915887541986	1.11199926528787	671.859841846902	0	48.4510285390343						678	14	7	NaN	NaN	NaN	5.8068E-18	1	36500	180.42	175.08	1	486900			2342	888	1991	2029	2342	2342		
DDSIEGIYDTLK	12	Unmodified	_DDSIEGIYDTLK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.830097	1367.64564	0.26589	0.00018209	1.9355	0.0013255	2.2014	0.0015076	684.831420021804	14.79	0.15075	14.79	14.746	14.897	0	468	40	1.01159370163332	0.0262010489671465	1.01159370163332	409.263435367748	0	10.6002353447035						444	18	4	NaN	NaN	NaN	1.7424E-05	1	14418	103.87	97.126	1	135810			2343	828	1992	2030	2343	2343		
DDSLGSQQTNEQCAQK	16	Unmodified	_DDSLGSQQTNEQCAQK_			0	0	0	P23497	P23497	P23497	SP100	Nuclear autoantigen Sp-100	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.889411	1807.76427	3.0372	0.0027484	-3.44	-0.0031128	-0.40277	-0.00036447	905.387821079789	3.1818	0.035448	3.1818	3.173	3.2084	0	354	16	1.08796502040166	0.0100232392085573	1.08796502040166	439.087194549853	0	4.045236659137						36	5	2	NaN	NaN	NaN	1.3E-17	1	27410	130.65	124.96	1	5643.3			2344	821	1993	2031	2344	2344		
DDSPLYIFDSSYGEHPK	17	Unmodified	_DDSPLYIFDSSYGEHPK_			0	0	0	Q6NYC1	Q6NYC1	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.444345	1968.87414	1.7133	0.0016884	1.1001	0.0010841	2.8134	0.0027725	985.445552392041	14.329	0.12411	14.329	14.258	14.382	0	183	31	1.20177511391933	0.0198913087124573	1.20177511391933	484.717042536673	0	8.02284572181065						240	15	3	NaN	NaN	NaN	0.00017364	1	31089	66.619	63.904	1	46301			2345	2050	1994	2032	2345	2345		
DDVAPESGDTTVK	13	Unmodified	_DDVAPESGDTTVK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.309529	1332.6045	3.2074	0.0021403	-1.802	-0.0012025	1.4053	0.00093779	667.308674615353	3.909	0.31037	3.909	3.8115	4.1219	0	549	82	0.957085760909907	0.0545985070007341	0.957085760909907	387.312881231943	0	22.0948904697029						1486	36	5	NaN	NaN	NaN	3.7093E-05	1	13364	103.69	76.739	1	633410			2346	378	1995	2033	2346	2346		
DDVAQTDLLQIDPNFGSK	18	Unmodified	_DDVAQTDLLQIDPNFGSK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.484002	1974.95345	2.2873	0.0022609	0.37347	0.00036917	2.6608	0.0026301	988.986031574695	15.775	0.27491	15.775	15.677	15.952	0	231	115	1.16991841121525	0.0757429686101727	1.16991841121525	471.857978484065	0	30.5490739440994						2590	32	6	NaN	NaN	NaN	1.0193E-44	1	31199	228.97	216.29	1	2235800			2347	576	1996	2034	2347	2347		
DDVMPATYCEIDLDK	15	Unmodified	_DDVMPATYCEIDLDK_			0	0	0	Q9HD45	Q9HD45	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.889503	1783.76445	2.6554	0.002371	3.5467	0.0031669	6.2021	0.0055378	892.893846633937	12.786	0.15077	12.786	12.724	12.875	0	315	34	1.11400032671325	0.0220116788084446	1.11400032671325	449.640698273693	0	8.88450962919057						384	18	5	NaN	NaN	NaN	0.0045168	1	26780	62.705	60.403	1	144880			2348	2971	1997	2035	2348	2348		
DDVSISVEEGK	11	Unmodified	_DDVSISVEEGK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.282783	1176.55101	0.99821	0.00058823	0.22108	0.00013028	1.2193	0.00071851	589.283121693072	6.4363	0.31923	6.4363	6.3919	6.7111	0	654	40	0.886123392477847	0.0264196242559493	0.886123392477847	359.083604060525	0	10.7060190220499						525	37	3	NaN	NaN	NaN	0.00031993	1	8778	95.311	71.736	1	130680			2349	565	1998	2036	2349	2349		
DEAEDYYDVITHPMDFQTVQNK	22	Unmodified	_DEAEDYYDVITHPMDFQTVQNK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	886.726997	2657.15916	1.1235	0.00099622	-0.85534	-0.00075845	0.26814	0.00023777	887.06050532941	16.076	0.079807	16.076	16.049	16.129	0	513	43	0.981336640919867	0.0282692223025561	0.981336640919867	592.631036812857	0	17.0718363347294						364	10	4	NaN	NaN	NaN	4.3159E-08	1	37467	84.58	83.564	1	80170			2350	3238	1999	2037	2350	2350		
DEALEDEDNK	10	Unmodified	_DEALEDEDNK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.246397	1176.47824	1.702	0.0010029	6.5571	0.0038638	8.2591	0.0048667	589.751913622689	2.8715	0.29261	2.8715	2.7474	3.04	0	645	43	0.892219381832517	0.0284380921957725	0.892219381832517	361.55411317537	0	11.5239697921873						386	34	3	NaN	NaN	NaN	0.0062289	1	8774	62.969	45.573	1	76355			2351	776	2000	2038	2351	2351		
DEALEDEDNKK	11	Unmodified	_DEALEDEDNKK_			0	0	1	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.293879	1304.5732	1.6398	0.0010713	-0.8121	-0.00053054	0.82773	0.00054075	653.293355422909	2.0823	0.15073	2.0823	2.0734	2.2242	0	579	13	0.936845902828289	0.00810155035567639	0.936845902828289	379.205821499654	0	3.27925334227371						59	18	2	NaN	NaN	NaN	8.9535E-07	1	12487	83.358	55.769	1	9593.2			2352	776	2001	2039	2352	2352		
DEAMVLHLTLGK	12	Unmodified	_DEAMVLHLTLGK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.857938	1325.70132	0.76293	0.00050647	-0.49129	-0.00032614	0.27164	0.00018033	663.857535322444	13.096	0.11525	13.096	13.026	13.141	0	471	28	1.00957851518677	0.0181366797500251	1.00957851518677	408.577445861367	0	7.33993263248072						208	14	3	NaN	NaN	NaN	0.015442	1	13162	36.952	29.812	1	45862			2353	2900	2002	2040	2353	2353		
DEATAAVIDLNDRPIGSR	18	Unmodified	_DEATAAVIDLNDRPIGSR_			0	0	1	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.328949	1911.96502	0.9015	0.00057546	0.22748	0.00014521	1.129	0.00072066	638.329201983761	10.702	0.1064	10.702	10.658	10.764	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	555.871569292519	0	13.4995008874811						278	13	4	NaN	NaN	NaN	1.267E-05	1	29874	58.508	57.77	1	56681			2354	3047	2003	2041	2354	2354		
DECNVVEVVAR	11	Unmodified	_DECNVVEVVAR_			0	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.311351	1288.60815	1.6313	0.0010527	0.66875	0.00043155	2.3	0.0014842	645.311817532788	9.1504	0.21284	9.1504	9.0794	9.2923	0	540	46	0.963152256458504	0.0303324855868733	0.963152256458504	389.904410961491	0	12.2792319142091						447	25	4	NaN	NaN	NaN	0.0040124	1	12017	76.85	64.023	1	210210			2355	346	2004	2042	2355	2355		
DEDQLEAFLK	10	Unmodified	_DEDQLEAFLK_			0	0	0	Q99757	Q99757	Q99757	TXN2	Thioredoxin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.295693	1206.57683	0.3522	0.00021284	-0.43462	-0.00026264	-0.08242	-4.9806E-05	604.295475688209	14.338	0.15958	14.338	14.276	14.435	0	615	40	0.912521036363781	0.0263720347724746	0.912521036363781	369.674058556328	0	10.6836519249763						375	19	3	NaN	NaN	NaN	7.1859E-05	1	9637	72.042	62.649	1	128240			2356	2672	2005	2043	2356	2356		
DEDSAEALLK	10	Unmodified	_DEDSAEALLK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.766768	1089.51898	0.49643	0.00027094	5.3716	0.0029316	5.868	0.0032026	545.768182805614	8.5116	0.10641	8.5116	8.4584	8.5648	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	366.830393636744	0	10.7040385613988						219	13	3	NaN	NaN	NaN	0.003911	1	6445	67.507	39.771	1	73829			2357	1703	2006	2044	2357	2357		
DEDWNMGDIVYTLTNR	16	Unmodified	_DEDWNMGDIVYTLTNR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.435997	1940.85744	1.7696	0.001719	0.54251	0.00052701	2.3121	0.002246	971.937956265373	19.729	0.053196	19.729	19.703	19.756	0	237	40	1.16593139812432	0.0259244956409976	1.16593139812432	470.307562035859	0	10.4572930804861						190	7	4	NaN	NaN	NaN	3.6897E-12	1	30523	119.79	114.97	1	43083			2358	1543	2007	2045	2358	2358		
DEEMIGPIIDK	11	Unmodified	_DEEMIGPIIDK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.313029	1258.6115	0.7812	0.0004924	2.7661	0.0017435	3.5473	0.0022359	630.314303084714	11.58	0.17741	11.58	11.509	11.687	0	537	46	0.965173861991602	0.0303324855868733	0.965173861991602	390.821534779854	0	12.2823348596368						245	21	3	NaN	NaN	NaN	0.00051159	1	11169	90.263	72.793	1	74105			2359	3044	2008	2046	2359	2359		
DEENDALLGGPAQLTDEEK	19	Unmodified	_DEENDALLGGPAQLTDEEK_			0	0	0	P09884	P09884	P09884	POLA1	DNA polymerase alpha catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.47129	2042.92802	1.5793	0.0016148	1.7535	0.0017929	3.3329	0.0034078	1022.47281084988	12.316	0.15075	12.316	12.263	12.414	0	189	28	1.1977968526266	0.0179034061988514	1.1977968526266	482.989864817634	0	7.219223961723						338	18	4	NaN	NaN	NaN	1.4042E-05	1	32394	90.376	88.528	1	69172			2360	612	2009	2047	2360	2360		
DEENHEESESLQEDMLGNR	19	Unmodified	_DEENHEESESLQEDMLGNR_			0	0	0	Q8IX12	Q8IX12	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.313476	2259.9186	0.73277	0.00055274	0.81976	0.00061835	1.5525	0.0011711	754.314212754531	8.6979	0.079913	8.6979	8.6712	8.7511	0	597	22	0.924688525662974	0.0141904869950359	0.924688525662974	558.931655866169	0	8.57749628502859						178	10	4	NaN	NaN	NaN	3.8542E-07	1	35273	105.08	97.766	1	34773			2361	2210	2010	2048	2361	2361		
DEENNPLETEYGLSVYK	17	Unmodified	_DEENNPLETEYGLSVYK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.46019	1998.90583	2.26	0.0022611	-0.020333	-2.0342E-05	2.2397	0.0022407	1000.96088687564	13.824	0.20392	13.824	13.735	13.939	0	213	58	1.18187287897418	0.0378324369326786	1.18187287897418	476.639657247416	0	15.2575121176127						950	24	6	NaN	NaN	NaN	1.3894E-25	1	31607	202.58	191.61	1	346470			2362	835	2011	2049	2362	2362		
DEESGGGSNPFQHLEK	16	Unmodified	_DEESGGGSNPFQHLEK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.592062	1729.75436	-0.92717	-0.00053553	0.077571	4.4804E-05	-0.8496	-0.00049072	577.591718104918	7.66	0.13307	7.66	7.5801	7.7132	0	813	22	0.778007628350577	0.0143331381547551	0.778007628350577	471.14868500411	0	8.67991385625857						204	16	3	NaN	NaN	NaN	0.00085776	1	25312	90.156	70.832	1	43956			2363	3452	2012	2050	2363	2363		
DEESGGGSNPFQHLEK	16	Unmodified	_DEESGGGSNPFQHLEK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.884455	1729.75436	3.1538	0.0027309	-0.60419	-0.00052316	2.5497	0.0022077	865.884064251041	7.6511	0.15967	7.6511	7.5713	7.7309	0	354	28	1.08796502040166	0.018041831774515	1.08796502040166	439.23790675148	0	7.28392574576952						233	19	3	NaN	NaN	NaN	0.012198	1	25314	21.668	15.64	1	48372			2364	3452	2012	2050	2364	2364		
DEETGLCLLPLK	12	Unmodified	_DEETGLCLLPLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.36051	1386.70647	0.69315	0.00048129	2.4587	0.0017072	3.1518	0.0021885	694.362942788544	15.712	0.20391	15.712	15.633	15.837	0	501	58	0.98941132619024	0.0383309147863334	0.98941132619024	400.233981547858	0	15.5055175084544						1031	24	5	NaN	NaN	NaN	0.00022987	1	15048	87.895	75.299	1	400560			2365	718	2013	2051	2365	2365		
DEEVHAGLGELLR	13	Unmodified	_DEEVHAGLGELLR_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.370255	1436.72596	1.3595	0.00097796	0.6086	0.00043781	1.9681	0.0014158	719.370264340838	11.518	0.18636	11.518	11.429	11.616	0	450	34	1.02367897599655	0.0221456308390058	1.02367897599655	413.953488519587	0	8.95521091692746						331	22	3	NaN	NaN	NaN	0.0073218	1	16589	47.361	41.495	1	84750			2366	1164	2014	2052	2366	2366		
DEFEGLFK	8	Unmodified	_DEFEGLFK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.737283	983.460012	-0.71825	-0.00035391	-1.1539	-0.00056855	-1.8721	-0.00092246	492.736668207313	13.416	0.21283	13.416	13.363	13.575	0	735	49	0.831145085810763	0.032649966211981	0.831145085810763	337.569974263723	0	13.2607993983849						617	25	4	NaN	NaN	NaN	0.0018737	1	3906	82.716	63.229	1	388650			2367	804	2015	2053	2367	2367		
DEFTIIPVLVGALSESK	17	Unmodified	_DEFTIIPVLVGALSESK_			0	0	0	Q9Y316	Q9Y316	Q9Y316	MEMO1	Protein MEMO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.498392	1816.98223	1.1573	0.0010525	-0.50647	-0.00046063	0.65079	0.00059189	909.999348045239	20.164	0.053204	20.164	20.137	20.19	0	285	52	1.13399579921816	0.0339665951041765	1.13399579921816	457.646874797011	0	13.7079044804568						173	7	5	NaN	NaN	NaN	8.1031E-08	1	27655	78.157	76.569	1	59663			2368	3365	2016	2054	2368	2368		
DEFTNTCPSDK	11	Unmodified	_DEFTNTCPSDK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.269349	1312.52415	2.1446	0.0014096	-0.29312	-0.00019266	1.8515	0.0012169	657.269179470693	4.2105	0.14187	4.2105	4.1662	4.3081	0	552	61	0.955063035883597	0.0404741262657745	0.955063035883597	386.555002731029	0	16.3816160833067						475	17	4	NaN	NaN	NaN	5.1023E-05	1	12719	85.716	75.014	1	167700			2369	3454	2017	2055	2369	2369		
DEGLHCDFACLMFK	14	Unmodified	_DEGLHCDFACLMFK_			0	0	0	P31350	P31350	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.582687	1741.72623	-2.4791	-0.0014418	0.26291	0.0001529	-2.2162	-0.0012889	581.582800505881	15.101	0.062078	15.101	15.074	15.136	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	484.750698154028	0	12.3793660233589						137	8	4	NaN	NaN	NaN	0.0017235	1	25645	69.276	64.447	1	21092			2370	923	2018	2056	2370	2370		
DEHNEERDVMLAK	13	Unmodified	_DEHNEERDVMLAK_			0	0	1	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.367386	1584.72022	2.6525	0.0021044	-2.0023	-0.0015885	0.65023	0.00051587	793.365509890266	4.1751	0.02659	4.1751	4.1573	4.1839	0	366	22	1.07994477139643	0.0140383382259719	1.07994477139643	436.317024682326	0	5.67174000788947						45	4	2	NaN	NaN	NaN	0.028623	1	21094	38.584	20.853	1	7249			2371	951	2019	2057	2371	2371		
DEHNEERDVMLAK	13	Unmodified	_DEHNEERDVMLAK_			0	0	1	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.24735	1584.72022	0.4265	0.00022573	1.8949	0.0010029	2.3214	0.0012286	529.248449199239	4.1662	0.12415	4.1662	4.1307	4.2549	0	732	31	0.833184998970724	0.0203977162825675	0.833184998970724	504.929691651351	0	12.3614954730005						288	15	4	NaN	NaN	NaN	4.9955E-07	1	21095	119.55	105.75	1	82361			2372	951	2019	2057	2372	2372		
DEIFQVHWSPHNETILASSGTDR	23	Unmodified	_DEIFQVHWSPHNETILASSGTDR_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	660.567575	2638.24119	0.46925	0.00030997	1.4182	0.0009368	1.8874	0.0012468	660.819544753206	13.167	0.13302	13.167	13.123	13.256	0	543	25	0.961130371139249	0.016178442079587	0.961130371139249	773.931900791674	0	13.0273819311955						287	16	5	NaN	NaN	NaN	5.2314E-05	1	37392	107.84	100.4	1	66002			2373	1890	2020	2058	2373	2373		
DEIFQVHWSPHNETILASSGTDR	23	Unmodified	_DEIFQVHWSPHNETILASSGTDR_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	880.421007	2638.24119	1.6322	0.001437	0.34153	0.00030069	1.9738	0.0017377	880.755413980904	13.167	0.13302	13.167	13.123	13.256	0	480	58	1.00353128488872	0.0383203192355812	1.00353128488872	606.057036713505	0	23.14257609259						578	16	5	NaN	NaN	NaN	0.00010522	1	37393	28.626	22.239	1	155740			2374	1890	2020	2058	2374	2374		
DEIFQVQWSPHNETILASSGTDR	23	Unmodified	_DEIFQVQWSPHNETILASSGTDR_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	877.420896	2629.24086	1.0254	0.00089971	-0.46746	-0.00041016	0.55794	0.00048955	877.75501202028	14.755	0.15078	14.755	14.701	14.852	0	477	40	1.0055473068722	0.0262082910405103	1.0055473068722	607.285459822089	0	15.8281106884913						536	18	6	NaN	NaN	NaN	1.9118E-24	1	37354	167.64	145.6	1	159570			2375	1582	2021	2059	2375	2375		
DEILPTTPISEQK	13	Unmodified	_DEILPTTPISEQK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.887946	1469.76134	2.2648	0.0016667	0.74837	0.00055071	3.0132	0.0022174	735.888786104963	10.543	0.30152	10.543	10.454	10.755	0	432	88	1.035754240522	0.0583436935193666	1.035754240522	418.746676358072	0	23.5878616682042						2017	35	5	NaN	NaN	NaN	8.7986E-06	1	17582	132.44	75.404	1	1810600			2376	819	2022	2060	2376	2376		
DEISVDSLDFNK	12	Unmodified	_DEISVDSLDFNK_			0	0	0	P63151;Q66LE6	P63151	P63151	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.327721	1380.64089	0.72209	0.0004992	0.20284	0.00014023	0.92494	0.00063944	691.327677685325	12.635	0.1064	12.635	12.573	12.68	0	513	37	0.981336640919867	0.0242307604673273	0.981336640919867	396.984857402658	0	9.80218671939446						336	13	4	NaN	NaN	NaN	4.6262E-05	1	14840	83.438	67.558	1	96932			2377	1428	2023	2061	2377	2377		
DEITSVLQDHLIK	13	Unmodified	_DEITSVLQDHLIK_			0	0	0	O94822	O94822	O94822	LTN1	E3 ubiquitin-protein ligase listerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.275234	1509.80387	-1.3508	-0.00068116	-1.3961	-0.00070404	-2.7469	-0.0013852	504.274352411335	14.267	0.088675	14.267	14.232	14.32	0	756	22	0.816857749704129	0.0142952858953773	0.816857749704129	495.247475848405	0	8.66699772240787						148	11	4	NaN	NaN	NaN	0.0040299	1	18806	53.028	52.794	1	32137			2378	388	2024	2062	2378	2378		
DELDELK	7	Unmodified	_DELDELK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.21364	860.412728	-1.2372	-0.00053349	1.0938	0.00047166	-0.14338	-6.1829E-05	431.214080313062	6.8353	0.13299	6.8353	6.7909	6.9239	0	768	31	0.808687310729125	0.0204317832671826	0.808687310729125	329.095731062502	0	8.31472506371045						267	16	3	NaN	NaN	NaN	0.0086281	1	1718	92.319	54.711	1	76908			2379	683	2025	2063	2379	2379		
DELEVIHLIEEHR	13	Unmodified	_DELEVIHLIEEHR_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.617771	1630.83148	-1.1485	-0.00062549	-1.4458	-0.00078743	-2.5943	-0.0014129	544.617174805557	14.365	0.11524	14.365	14.32	14.435	0	753	28	0.81889964927511	0.0183745423602224	0.81889964927511	496.151017775147	0	11.1326801779032						241	14	4	NaN	NaN	NaN	0.00017944	1	22521	60	56.897	1	80187			2380	621	2026	2064	2380	2380		
DELFALEQSCAQVVLQAANER	21	Unmodified	_DELFALEQSCAQVVLQAANER_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.725151	2390.15362	0.8098	0.00064599	-0.14465	-0.00011539	0.66515	0.00053061	798.393697579447	18.656	0.12415	18.656	18.621	18.745	0	399	40	1.0578662689527	0.0261107757546724	1.0578662689527	639.218692018429	0	15.7775102726472						334	15	5	NaN	NaN	NaN	0.00063737	1	36301	76.049	71.452	1	72139			2381	1898	2027	2065	2381	2381		
DELHIVEAEAMNYEGSPIK	19	Unmodified	_DELHIVEAEAMNYEGSPIK_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.01207	2144.00958	1.8119	0.0019442	-0.38074	-0.00040853	1.4312	0.0015357	1073.51365092028	14.941	0.37245	14.941	14.834	15.207	0	138	112	1.23157729878518	0.0735222409356213	1.23157729878518	496.453147373529	0	29.6370743033733						2342	43	7	NaN	NaN	NaN	6.7005E-05	1	33932	67.927	63.621	1	1219600			2382	547	2028	2066	2382	2382		
DELHIVEAEAMNYEGSPIK	19	Unmodified	_DELHIVEAEAMNYEGSPIK_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.677138	2144.00958	1.4693	0.0010515	0.82295	0.00058897	2.2922	0.0016405	716.012425564175	14.932	0.39903	14.932	14.826	15.225	0	519	169	0.97729762293174	0.113406420450684	0.97729762293174	590.926380787809	0	68.5715835407329						3708	46	7	NaN	NaN	NaN	3.1701E-05	1	33933	130.65	102.43	1	4207200			2383	547	2028	2066	2383	2383		
DELHIVEAEAMNYEGSPIK	19	Oxidation (M)	_DELHIVEAEAM(Oxidation (M))NYEGSPIK_	DELHIVEAEAM(1)NYEGSPIK	DELHIVEAEAM(160)NYEGSPIK	0	1	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.008776	2160.0045	1.8079	0.0013035	-0.91778	-0.00066173	0.89007	0.00064175	721.342327216327	13.877	0.29259	13.877	13.762	14.054	0	540	151	0.963152256458504	0.10131177584004	0.963152256458504	582.345609457747	0	61.2555984281774						1274	34	3	NaN	NaN	NaN	5.8158E-15	1	34174	162.16	155.31	1	953320			2384	547	2028	2067	2384	2384	120	
DELHIVEAEAMNYEGSPIK	19	Oxidation (M)	_DELHIVEAEAM(Oxidation (M))NYEGSPIK_	DELHIVEAEAM(1)NYEGSPIK	DELHIVEAEAM(87)NYEGSPIK	0	1	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.00953	2160.0045	2.1068	0.0022774	0.358	0.000387	2.4648	0.0026644	1081.51105724102	13.806	0.31033	13.806	13.762	14.072	0	153	136	1.22165005014568	0.0893699586737293	1.22165005014568	492.427963339547	0	36.0236278205826						1223	36	6	NaN	NaN	NaN	1.1806E-06	1	34175	86.952	81.049	1	576030			2385	547	2028	2067	2385	2385	120	
DELIHELK	8	Unmodified	_DELIHELK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.771657	995.528761	0.63345	0.00031595	0.52831	0.0002635	1.1618	0.00057945	498.77187202187	6.6934	0.20391	6.6934	6.6402	6.8441	0	663	37	0.880024865079826	0.0243991920216602	0.880024865079826	357.362744108567	0	9.90808619265709						513	24	4	NaN	NaN	NaN	1.9311E-05	1	4179	150.88	70.588	1	222820			2386	288	2029	2068	2386	2386		
DELILEGNDIELVSNSAALIQQATTVK	27	Unmodified	_DELILEGNDIELVSNSAALIQQATTVK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	962.176509	2883.5077	1.2988	0.0012496	0.19201	0.00018475	1.4908	0.0014344	962.510956875753	20.04	0.08866	20.04	20.031	20.119	0	189	49	1.1977968526266	0.0318392099207156	1.1977968526266	723.056153207396	0	19.2199007669393						396	11	7	NaN	NaN	NaN	7.4029E-22	1	38053	183.24	177.13	1	172240			2387	943	2030	2069	2387	2387		
DELLGEKPEVK	11	Unmodified	_DELLGEKPEVK_			0	0	1	P08651	P08651	P08651	NFIC	Nuclear factor 1 C-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.840268	1255.66598	2.2276	0.0014008	-0.45276	-0.00028471	1.7748	0.0011161	628.84010080237	6.0727	0.14188	6.0727	6.0195	6.1614	0	522	49	0.975277694896658	0.032338985271784	0.975277694896658	394.922880443333	0	13.0951474446473						321	17	2	NaN	NaN	NaN	3.0393E-06	1	11088	126.29	113.02	1	108970			2388	587	2031	2070	2388	2388		
DELLPHILPLLK	12	Unmodified	_DELLPHILPLLK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.621906	1399.84389	-1.3115	-0.0006133	1.9257	0.00090049	0.61415	0.00028719	467.623120429502	18.257	0.10642	18.257	18.204	18.311	0	669	22	0.875957769340875	0.0142358237480561	0.875957769340875	531.457102732095	0	8.63709405744476						147	13	3	NaN	NaN	NaN	0.048295	1	15457	22.044	21.641	1	31683			2389	2448	2032	2071	2389	2389		
DELNADHPFIYIIR	14	Unmodified	_DELNADHPFIYIIR_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.6299	1714.86787	-0.046062	-2.6376E-05	-0.12152	-6.9584E-05	-0.16758	-9.596E-05	572.629803173786	14.701	0.15964	14.701	14.666	14.826	-1.7764E-15	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	550.188219773322	0	14.7501460873086						478	19	5	NaN	NaN	NaN	0.00012548	1	24907	99.174	94.928	1	250620			2390	994	2033	2072	2390	2390		
DELNADHPFIYIIR	14	Unmodified	_DELNADHPFIYIIR_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.441212	1714.86787	1.8047	0.0015492	2.6213	0.0022502	4.426	0.0037994	858.444668795045	14.701	0.13306	14.701	14.657	14.79	0	249	82	1.15795408347545	0.0539024703864788	1.15795408347545	467.526441436328	0	21.7632378727665						742	16	4	NaN	NaN	NaN	0.00019338	1	24911	80.815	74.787	1	209700			2391	994	2033	2072	2391	2391		
DELPIEVDLGK	11	Unmodified	_DELPIEVDLGK_			0	0	0	Q9H871	Q9H871	Q9H871	RMND5A	Protein RMD5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.326993	1226.63943	0.2025	0.0001244	-0.98046	-0.00060232	-0.77796	-0.00047792	614.326227572911	14.099	0.079798	14.099	14.054	14.134	0	597	31	0.924688525662974	0.0202735302015807	0.924688525662974	374.533977294371	0	8.21154982403567						133	10	2	NaN	NaN	NaN	0.013276	1	10198	40.386	30.993	1	28469			2392	2924	2034	2073	2392	2392		
DELRETLK	8	Unmodified	_DELRETLK_			0	0	1	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.274564	1002.53457	1.1246	0.00056488	0.18156	9.1191E-05	1.3062	0.00065607	502.274764819987	4.113	0.16849	4.113	4.0686	4.2371	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	353.199297470317	0	7.43603112920545						227	20	3	NaN	NaN	NaN	0.061382	1	4357	60.892	39.617	1	65646			2393	1136	2035	2074	2393	2393		
DELSDWSLAGEDDRDSR	17	Unmodified	_DELSDWSLAGEDDRDSR_			0	0	1	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.952207	1964.83479	0.41099	0.00026959	0.71322	0.00046784	1.1242	0.00073743	655.952854221093	11.075	0.088653	11.075	11.03	11.119	0	666	49	0.877991458330206	0.032536775783098	0.877991458330206	531.191752189495	0	19.6850057877447						336	11	3	NaN	NaN	NaN	0.00014935	1	31008	99.589	92.382	1	90386			2394	1178	2036	2075	2394	2394		
DENAIYFLGNSLGLQPK	17	Unmodified	_DENAIYFLGNSLGLQPK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.983441	1877.95233	1.4114	0.0013267	-0.86938	-0.0008172	0.54203	0.0005095	939.98298434385	18.692	0.10641	18.692	18.639	18.745	0	273	76	1.14198628764525	0.0498822460949822	1.14198628764525	460.758236961231	0	20.1260348001044						616	13	4	NaN	NaN	NaN	1.7352E-06	1	29104	86.729	72.951	1	154950			2395	1903	2037	2076	2395	2395		
DENFILK	7	Unmodified	_DENFILK_			0	0	0	P30414	P30414	P30414	NKTR	NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	1	878.46181	877.454533	2.8373	0.0024924	-0.67531	-0.00059324	2.1619	0.0018992	878.461343539253	11.509	0.23064	11.509	11.438	11.669	0	282	433	1.13599383354359	0.28754595272583	1.13599383354359	231.080277195544	0	58.4916893915444						4301	27	4	NaN	NaN	NaN	0.004898	1	1970	143.56	96.754	1	3334400			2396	908	2038	2077	2396	2396		
DENLALYVENQFR	13	Unmodified	_DENLALYVENQFR_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.598488	1609.77364	-2.0302	-0.0010914	0.33891	0.0001822	-1.6913	-0.00090922	537.598947264558	16.936	0.10642	16.936	16.892	16.998	0	726	19	0.837263974740672	0.0122352270963073	0.837263974740672	507.333320941015	0	7.41383671399421						137	13	3	NaN	NaN	NaN	0.0021278	1	21886	88.24	83.994	1	26919			2397	495	2039	2078	2397	2397		
DENLALYVENQFR	13	Unmodified	_DENLALYVENQFR_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.894094	1609.77364	1.0689	0.00086141	0.76601	0.00061732	1.8349	0.0014787	805.894312673457	16.945	0.16852	16.945	16.883	17.051	0	324	139	1.1079963157843	0.0922966826048541	1.1079963157843	447.589978943541	0	37.2844833824409						1107	20	3	NaN	NaN	NaN	0.00052628	1	21888	84.999	77.859	1	277520			2398	495	2039	2078	2398	2398		
DENQHSNASQSLCDIIR	17	Unmodified	_DENQHSNASQSLCDIIR_			0	0	0	Q9UPN7	Q9UPN7	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.969315	1985.88612	-1.2196	-0.00080855	1.3857	0.00091869	0.16613	0.00011014	663.304397871977	9.381	0.07092	9.381	9.3544	9.4253	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	510.21383147071	0	9.86503187240646						163	9	3	NaN	NaN	NaN	0.00084845	1	31375	50.641	38.962	1	33717			2399	3312	2040	2079	2399	2399		
DENQSINHQMAQEDAQR	17	Unmodified	_DENQSINHQMAQEDAQR_			0	0	0	P20073	P20073	P20073	ANXA7	Annexin A7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.96082	2012.86063	1.0072	0.00067677	1.563	0.0010503	2.5702	0.0017271	672.296391894025	4.0953	0.079812	4.0953	4.0686	4.1484	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	513.864688831144	0	9.86000436511728						188	10	4	NaN	NaN	NaN	1.141E-05	1	31842	65.12	60.026	1	42006			2400	777	2041	2080	2400	2400		
DENSVELTMAEGPYK	15	Unmodified	_DENSVELTMAEGPYK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.882535	1681.75052	2.2304	0.0018777	-1.576	-0.0013268	0.65431	0.00055085	841.882138361583	11.216	0.34588	11.216	11.066	11.412	0	375	46	1.07392668217569	0.0301029015491134	1.07392668217569	433.668666397676	0	12.1560301891903						1160	40	6	NaN	NaN	NaN	3.6194E-12	1	23952	140.01	125.55	1	442790			2401	1771	2042	2081	2401	2401		
DENSVELTMAEGPYK	15	Unmodified	_DENSVELTMAEGPYK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.882535	1681.75052	1.7645	0.0014855	-0.51448	-0.00043313	1.25	0.0010524	841.882152162983	11.216	0.097519	11.216	11.172	11.27	0	249	19	1.15795408347545	0.0119692623053853	1.15795408347545	467.600262758319	0	4.83337835143107						147	12	3	NaN	NaN	NaN	0.00015663	1	23953	72.846	69.968	1	25761			2402	1771	2042	2081	2402	2402		
DEPCSSTSRPALEEDVIYHVK	21	Unmodified	_DEPCSSTSRPALEEDVIYHVK_			0	0	1	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	811.384794	2431.13255	2.2148	0.001797	-0.41355	-0.00033555	1.8012	0.0014615	811.720279808591	9.5938	0.097541	9.5938	9.5583	9.6558	0	411	34	1.04982941439551	0.0221089774592802	1.04982941439551	634.300616513828	0	13.3581111756014						283	12	4	NaN	NaN	NaN	0.037406	1	36490	33.5	26.818	1	58295			2403	2632	2043	2082	2403	2403		
DEPDTNLVALMK	12	Unmodified	_DEPDTNLVALMK_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.337035	1344.65952	1.5364	0.0010345	1.3926	0.00093772	2.929	0.0019722	673.338140185959	13.93	0.25713	13.93	13.788	14.045	0	498	46	0.991429299781895	0.0302779838228682	0.991429299781895	401.17407100748	0	12.2517480921643						861	30	3	NaN	NaN	NaN	0.037216	1	13736	36.24	19.588	1	374830			2404	434	2044	2083	2404	2404		
DEPDWESLIFLAR	13	Unmodified	_DEPDWESLIFLAR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.893563	1589.77257	0.96144	0.0007652	-0.79814	-0.00063524	0.16329	0.00012996	795.892717006911	19.986	0.070939	19.986	19.969	20.04	0	426	58	1.03977710643793	0.0381987855157915	1.03977710643793	420.076998326713	0	15.4325682493352						326	9	4	NaN	NaN	NaN	1.475E-05	1	21271	94.66	84.409	1	109790			2405	1155	2045	2084	2405	2405		
DEPSVAAMVYPFTGDHK	17	Unmodified	_DEPSVAAMVYPFTGDHK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.957576	1862.8509	1.2079	0.00075129	-0.28164	-0.00017517	0.9263	0.00057612	622.292869112767	14.471	0.22168	14.471	14.338	14.56	0	573	52	0.940896116921038	0.0344244475580081	0.940896116921038	569.467879928277	0	20.8350494980375						730	26	5	NaN	NaN	NaN	0.029215	1	28749	39.82	38.11	1	212930			2406	1235	2046	2085	2406	2406		
DEPSVAAMVYPFTGDHK	17	Unmodified	_DEPSVAAMVYPFTGDHK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.432726	1862.8509	1.8076	0.0016854	0.17711	0.00016514	1.9847	0.0018506	932.934268252509	14.453	0.23052	14.453	14.347	14.577	0	165	64	1.21370334790578	0.0417345195513319	1.21370334790578	489.723090291939	0	16.8396650810872						1146	27	4	NaN	NaN	NaN	1.9635E-06	1	28750	95.656	87.282	1	321350			2407	1235	2046	2085	2407	2407		
DEPTGEVLSLVGK	13	Unmodified	_DEPTGEVLSLVGK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.356282	1342.69801	1.4002	0.00094146	-2.4077	-0.0016188	-1.0074	-0.00067736	672.354357303022	13.921	0.26599	13.921	13.779	14.045	0	531	43	0.969216233931596	0.028292695105214	0.969216233931596	392.191572581473	0	11.4485872165707						525	31	2	NaN	NaN	NaN	0.00090275	1	13688	65.879	57.696	1	257770			2408	350	2047	2086	2408	2408		
DEQEHEFYK	9	Unmodified	_DEQEHEFYK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.762017	1223.50948	1.2826	0.00078595	0.32209	0.00019736	1.6047	0.00098331	612.761919758409	3.6164	0.15071	3.6164	3.581	3.7317	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	367.972474795418	0	6.57580386631042						175	18	3	NaN	NaN	NaN	0.025443	1	10105	55.235	43.875	1	28863			2409	1068	2048	2087	2409	2409		
DEQFEQCVQNFNK	13	Unmodified	_DEQFEQCVQNFNK_			0	0	0	O00499	O00499	O00499	BIN1	Myc box-dependent-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.364844	1684.71513	2.0987	0.0017699	1.7352	0.0014634	3.8339	0.0032334	843.366651003498	9.7268	0.070948	9.7268	9.6913	9.7622	0	396	25	1.05987478976334	0.0160670595642813	1.05987478976334	427.988121926859	0	6.48804058198158						150	9	3	NaN	NaN	NaN	2.938E-07	1	24030	129.69	114.54	1	30324			2410	86	2049	2088	2410	2410		
DEQIEHWK	8	Unmodified	_DEQIEHWK_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.756538	1083.49852	0.60852	0.00033028	1.1846	0.00064296	1.7931	0.00097324	542.757058345262	4.6539	0.11529	4.6539	4.6184	4.7337	0	702	34	0.853568545818287	0.0224078882408908	0.853568545818287	346.235436261972	0	9.08937542134549						160	14	3	NaN	NaN	NaN	0.0022187	1	6292	77.072	57.584	1	33582			2411	257	2050	2089	2411	2411		
DEQLESLFQR	10	Unmodified	_DEQLESLFQR_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.812042	1263.60953	1.064	0.00067329	2.1822	0.0013809	3.2461	0.0020542	632.811791400581	13.23	0.204	13.23	13.159	13.363	0	567	76	0.944945209309785	0.0505751639210029	0.944945209309785	382.614057003589	0	20.4781911805985						833	24	4	NaN	NaN	NaN	0.00070422	1	11318	98.009	57.507	1	403520			2412	527	2051	2090	2412	2412		
DEQLLTNVLETLR	13	Unmodified	_DEQLLTNVLETLR_			0	0	0	Q9P2I0	Q9P2I0	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.419945	1542.82534	0.80711	0.00062343	-1.7167	-0.001326	-0.90963	-0.00070262	772.417870343041	19.348	0.10639	19.348	19.286	19.392	0	393	58	1.0618830335572	0.0381724416536884	1.0618830335572	429.12066842421	0	15.4259774006762						290	13	3	NaN	NaN	NaN	4.4562E-05	1	19828	110.44	91.932	1	60548			2413	3160	2052	2091	2413	2413		
DESANQEEPEAR	12	Unmodified	_DESANQEEPEAR_			0	0	0	P50552	P50552	P50552	VASP	Vasodilator-stimulated phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.792034	1373.56952	2.3262	0.0015999	-0.36125	-0.00024847	1.9649	0.0013515	687.791679825006	2.4193	0.088666	2.4193	2.4015	2.4902	0	591	19	0.928742107665821	0.0121590616453449	0.928742107665821	375.727715027302	0	4.91901509705792						77	11	2	NaN	NaN	NaN	0.0030574	1	14597	50.297	44.431	1	14216			2414	1166	2053	2092	2414	2414		
DESGGGGGPTVPPHQEAASGELR	23	Unmodified	_DESGGGGGPTVPPHQEAASGELR_			0	0	0	Q7L2J0	Q7L2J0	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.677077	2204.0094	0.34714	0.00025539	2.3981	0.0017642	2.7452	0.0020196	736.012793406609	5.3632	0.053187	5.3632	5.3366	5.3898	0	636	22	0.898312834727904	0.0142141138880033	0.898312834727904	543.072850550458	0	8.59310815651997						63	7	2	NaN	NaN	NaN	0.018487	1	34722	16.155	13.608	1	13886			2415	2116	2054	2093	2415	2415		
DESPEGSAADDLYSMLEEER	20	Unmodified	_DESPEGSAADDLYSMLEEER_			0	0	0	Q16540	Q16540	Q16540	MRPL23	39S ribosomal protein L23, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.96825	2241.92195	1.5463	0.0017349	0.094391	0.0001059	1.6407	0.0018408	1122.46936856819	17.832	0.079803	17.832	17.796	17.876	0	162	34	1.21569043230068	0.0218609305816932	1.21569043230068	489.911310795761	0	8.80974043385709						197	10	3	NaN	NaN	NaN	1.0334E-15	1	35112	120.75	111.59	1	34661			2416	1887	2055	2094	2416	2416		
DESSPYAAMLAAQDVAQR	18	Unmodified	_DESSPYAAMLAAQDVAQR_			0	0	0	P62263	P62263	P62263	RPS14	40S ribosomal protein S14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.949272	1921.88399	1.7301	0.0016643	1.2324	0.0011855	2.9625	0.0028498	962.451531668947	14.019	0.12413	14.019	13.948	14.072	0	252	49	1.15595906938629	0.031926818196472	1.15595906938629	466.317651195478	0	12.8793823810977						452	15	4	NaN	NaN	NaN	3.4476E-10	1	30099	141.87	133.12	1	110620			2417	1376	2056	2095	2417	2417		
DETEFYLGK	9	Unmodified	_DETEFYLGK_			0	0	0	P18077	P18077	P18077	RPL35A	60S ribosomal protein L35a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.258579	1100.50261	0.31228	0.00017215	-0.013856	-7.638E-06	0.29843	0.00016451	551.258738560874	9.5938	0.25715	9.5938	9.5406	9.7977	0	684	64	0.86578508874114	0.0427252799278987	0.86578508874114	351.122734739914	0	17.3274145349683						765	30	4	NaN	NaN	NaN	2.19E-08	1	6725	146.27	120.04	1	587030			2418	750	2057	2096	2418	2418		
DETFLWFR	8	Unmodified	_DETFLWFR_			0	0	0	Q9HD67	Q9HD67	Q9HD67	MYO10	Unconventional myosin-X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.271824	1112.5291	-1.2879	-0.00071769	0.8724	0.00048616	-0.41547	-0.00023153	557.272164938572	17.362	0.088692	17.362	17.335	17.424	0	666	22	0.877991458330206	0.0142358237480561	0.877991458330206	356.025468503245	0	5.7726254297171						87	11	2	NaN	NaN	NaN	0.0033119	1	7050	66.087	49.54	1	17791			2419	2972	2058	2097	2419	2419		
DETLQPFFEGLLPR	14	Unmodified	_DETLQPFFEGLLPR_			0	0	0	Q9HCG8	Q9HCG8	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.430313	1660.84607	1.6556	0.0013765	-0.80529	-0.00066954	0.85028	0.00070695	831.429819339446	19.88	0.088686	19.88	19.809	19.898	0	399	25	1.0578662689527	0.0160714927508061	1.0578662689527	427.22715385523	0	6.49059177671808						117	11	2	NaN	NaN	NaN	0.020764	1	23374	36.514	29.374	1	30652			2420	2963	2059	2098	2420	2420		
DETNYGIPQR	10	Unmodified	_DETNYGIPQR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.783284	1191.55202	1.8373	0.0010965	0.53088	0.00031682	2.3682	0.0014133	596.783559729915	6.0372	0.2838	6.0372	5.9396	6.2234	0	612	100	0.914549654013882	0.0668980936219384	0.914549654013882	370.548696304165	0	27.1051454320129						1073	33	4	NaN	NaN	NaN	2.5692E-14	1	9202	208.72	188.06	1	750840			2421	1435	2060	2099	2421	2421		
DETVSDCSPHIANIGR	16	Unmodified	_DETVSDCSPHIANIGR_			0	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.940697	1769.80026	1.1609	0.00068601	-0.49747	-0.00029397	0.66342	0.00039204	590.940548495353	7.3053	0.16847	7.3053	7.2521	7.4205	0	660	70	0.882057989648486	0.0467424323916502	0.882057989648486	534.063891824973	0	28.3013652723656						881	20	5	NaN	NaN	NaN	2.7504E-09	1	26396	147.19	139.19	1	350270			2422	1100	2061	2100	2422	2422		
DETVSDCSPHIANIGR	16	Unmodified	_DETVSDCSPHIANIGR_			0	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.907407	1769.80026	3.3391	0.0029581	-2.1135	-0.0018724	1.2255	0.0010857	885.905887926135	7.3142	0.19505	7.3142	7.2432	7.4383	0	312	85	1.11600111266355	0.0560722236139555	1.11600111266355	450.475703726981	0	22.633646244086						1111	23	5	NaN	NaN	NaN	2.2043E-24	1	26397	149.58	142.44	1	396500			2423	1100	2061	2100	2423	2423		
DEVDGGPPCAPGGTAK	16	Unmodified	_DEVDGGPPCAPGGTAK_			0	0	0	Q9NV96	Q9NV96	Q9NV96	TMEM30A	Cell cycle control protein 50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.340837	1526.66712	2.6692	0.0020402	-8.1354	-0.0062183	-5.4662	-0.0041781	764.334803547049	4.5918	0.23941	4.5918	4.5386	4.778	0	456	49	1.01965166402748	0.0322140561522897	1.01965166402748	412.093234125558	0	13.0193428328889						552	28	5	NaN	NaN	NaN	0.0035934	1	19304	75.5	74.351	1	143880			2424	3061	2062	2101	2424	2424		
DEVFHFFNVLASHS	14	Unmodified	_DEVFHFFNVLASHS_			0	0	0	Q56P03	Q56P03	Q56P03	EAPP	E2F-associated phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.263329	1647.76816	-2.3535	-0.0012951	1.4913	0.00082061	-0.86224	-0.00047446	550.264117183977	17.947	0.053196	17.947	17.92	17.974	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	499.818156606425	0	11.1270744911035						117	7	3	NaN	NaN	NaN	0.0015385	1	22962	52.837	46.574	1	20362			2425	1956	2063	2102	2425	2425		
DEVLYVFPSDFCR	13	Unmodified	_DEVLYVFPSDFCR_			0	0	0	Q14108	Q14108	Q14108	SCARB2	Lysosome membrane protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.879598	1645.74464	1.5429	0.0012711	4.4572	0.0036722	6.0001	0.0049434	823.883593074317	16.573	0.097538	16.573	16.51	16.608	0	342	49	1.09598084995137	0.0320633273286326	1.09598084995137	442.653593050102	0	12.9499954746386						243	12	3	NaN	NaN	NaN	0.0034718	1	22905	40.533	34.505	1	50517			2426	1718	2064	2103	2426	2426		
DEYDDLAESEQFGVVMGTVPR	21	Unmodified	_DEYDDLAESEQFGVVMGTVPR_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1179.03373	2356.05291	0.17627	0.00020782	0.82352	0.00097096	0.99979	0.0011788	1179.53591253914	17.016	0.097561	17.016	16.989	17.087	0	99	46	1.25735632164274	0.0297165117023155	1.25735632164274	506.551035584587	0	11.9718885710159						245	12	3	NaN	NaN	NaN	1.5725E-05	1	36105	42.218	41.699	1	43432			2427	270	2065	2104	2427	2427		
DEYLINSQTTEHIVK	15	Unmodified	_DEYLINSQTTEHIVK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.303741	1788.88939	-0.067926	-4.0572E-05	1.1691	0.00069833	1.1012	0.00065776	597.30435548185	9.4519	0.1064	9.4519	9.4076	9.514	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	553.690885829416	0	14.737082141826						200	13	4	NaN	NaN	NaN	0.0016854	1	26943	64.266	58.238	1	45874			2428	3037	2066	2105	2428	2428		
DEYLINSQTTEHIVK	15	Unmodified	_DEYLINSQTTEHIVK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.451973	1788.88939	1.811	0.0016217	0.27105	0.00024271	2.0821	0.0018644	895.452194098975	9.4519	0.12415	9.4519	9.4164	9.5406	0	240	49	1.16393748060522	0.0319092676377801	1.16393748060522	469.786315771183	0	12.8791602060229						480	15	5	NaN	NaN	NaN	3.1047E-08	1	26944	126.21	120.18	1	171150			2429	3037	2066	2105	2429	2429		
DFAAEVVHPGDLK	13	Unmodified	_DFAAEVVHPGDLK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.356616	1396.69868	1.7935	0.0012543	1.2318	0.00086147	3.0253	0.0021158	699.356965018957	10.188	0.17735	10.188	10.126	10.303	0	423	40	1.04178812298108	0.0261432202901304	1.04178812298108	421.391540799552	0	10.574637622088						435	21	4	NaN	NaN	NaN	3.3009E-05	1	15344	88.24	49.201	1	160270			2430	1251	2067	2106	2430	2430		
DFAANVYEAFSTPQQLEK	18	Unmodified	_DFAANVYEAFSTPQQLEK_			0	0	0	P56589	P56589	P56589	PEX3	Peroxisomal biogenesis factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.49437	2056.97419	0.87889	0.00090481	1.3711	0.0014116	2.25	0.0023164	1029.99627782417	17.388	0.08869	17.388	17.344	17.433	0	177	28	1.2057522832638	0.0179009488089314	1.2057522832638	486.175337700291	0	7.21790035410925						203	11	4	NaN	NaN	NaN	0.0068012	1	32657	51.829	49.981	1	31449			2431	1289	2068	2107	2431	2431		
DFADILVQPTLEENK	15	Unmodified	_DFADILVQPTLEENK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.443617	1730.87268	1.4602	0.0012652	0.13315	0.00011537	1.5933	0.0013805	866.945455775005	16.422	0.17732	16.422	16.333	16.51	0	321	70	1.10999792833052	0.0460181056386699	1.10999792833052	448.130822380374	0	18.5785315430818						538	21	4	NaN	NaN	NaN	7.6638E-05	1	25357	86.243	82.506	1	126270			2432	3048	2069	2108	2432	2432		
DFAIDIIK	8	Unmodified	_DFAIDIIK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.765843	933.517133	-0.74757	-0.00034969	-1.9144	-0.00089547	-2.6619	-0.0012452	467.764880021083	14.56	0.16846	14.56	14.489	14.657	0	735	52	0.831145085810763	0.0346930021779448	0.831145085810763	337.818941957132	0	14.1009716464091						670	20	4	NaN	NaN	NaN	0.010479	1	2942	58.426	35.117	1	393210			2433	1822	2070	2109	2433	2433		
DFAVLEDHTLAHSLQEQEIEHHLASNVQR	29	Unmodified	_DFAVLEDHTLAHSLQEQEIEHHLASNVQR_			0	0	0	Q8IVM0	Q8IVM0	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	842.416996	3365.63888	1.2791	0.0010775	1.6357	0.0013779	2.9148	0.0024554	842.668630053407	13.15	0.079814	13.15	13.114	13.194	0	432	25	1.035754240522	0.0160936862293779	1.035754240522	833.076447602203	0	12.9444519059249						208	10	5	NaN	NaN	NaN	2.1999E-21	1	38587	69.215	68.133	1	42809			2434	2198	2071	2110	2434	2434		
DFDWNLK	7	Unmodified	_DFDWNLK_			0	0	0	Q7Z739;Q9Y5A9	Q7Z739;Q9Y5A9	Q7Z739	YTHDF3;YTHDF2	YTH domain-containing family protein 3;YTH domain-containing family protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.224342	936.434132	-1.6238	-0.00076195	1.7156	0.000805	0.091755	4.3054E-05	469.225154922415	12.325	0.1153	12.325	12.254	12.369	0	762	31	0.812773098473386	0.0204204181290417	0.812773098473386	330.336702703808	0	8.29950401317512						131	14	2	NaN	NaN	NaN	0.041548	1	2991	37.608	23.073	1	34727			2435	2150;3426	2072	2111	2435	2435		
DFEEYPEHR	9	Unmodified	_DFEEYPEHR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.262185	1220.50982	1.6282	0.00099524	1.9248	0.0011766	3.553	0.0021718	611.263281801114	4.6893	0.22168	4.6893	4.6273	4.8489	0	612	43	0.914549654013882	0.0283908138186021	0.914549654013882	370.448037681379	0	11.5000002691149						288	26	2	NaN	NaN	NaN	8.3657E-05	1	10018	110.22	105.31	1	176240			2436	135	2073	2112	2436	2436		
DFENSMNQVK	10	Unmodified	_DFENSMNQVK_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.271695	1210.52884	1.0368	0.00062856	1.1038	0.00066919	2.1405	0.0012977	606.272477025306	6.7111	0.13295	6.7111	6.658	6.7909	0	603	31	0.920633820089869	0.0202763400038137	0.920633820089869	372.946876752423	0	8.21390384686759						251	16	4	NaN	NaN	NaN	8.2751E-06	1	9739	103.8	90.977	1	76428			2437	341	2074	2113	2437	2437		
DFEPILEQQIHQDDFGESK	19	Unmodified	_DFEPILEQQIHQDDFGESK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.021962	2274.04406	0.88943	0.0006751	-0.89669	-0.00068061	-0.0072612	-5.5114E-06	759.355605175118	13.832	0.11526	13.832	13.77	13.886	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	552.782213903601	0	14.7128968551373						362	14	4	NaN	NaN	NaN	1.0852E-10	1	35404	87.727	84.286	1	93566			2438	408	2075	2114	2438	2438		
DFESHITSYK	10	Unmodified	_DFESHITSYK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.788035	1225.56152	1.4199	0.0008715	4.6506	0.0028545	6.0704	0.003726	613.792083107396	6.6313	0.38131	6.6313	6.4451	6.8264	0	588	79	0.93076847747433	0.0527331360113175	0.93076847747433	377.000254715138	0	21.3591308572684						834	44	3	NaN	NaN	NaN	2.9419E-07	1	10157	146.88	132.12	1	421390			2439	21	2076	2115	2439	2439		
DFFQSYGNVVELR	13	Unmodified	_DFFQSYGNVVELR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.385905	1572.75726	1.5915	0.0012531	1.2602	0.00099227	2.8517	0.0022454	787.387275114283	15.996	0.26605	15.996	15.899	16.165	0	396	97	1.05987478976334	0.0642860444051108	1.05987478976334	428.236596425364	0	25.9744236956909						1303	31	5	NaN	NaN	NaN	4.7312E-11	1	20748	163.59	150.31	1	1085100			2440	1649	2077	2116	2440	2440		
DFFTSGSPEETAFR	14	Unmodified	_DFFTSGSPEETAFR_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.857177	1589.6998	1.3485	0.0010732	2.3431	0.0018648	3.6916	0.002938	796.361140841534	13.345	0.079842	13.345	13.309	13.389	0	414	37	1.04781950764076	0.0241205492413457	1.04781950764076	423.32633877923	0	9.74486896380995						205	10	3	NaN	NaN	NaN	3.5961E-07	1	21263	103.69	82.598	1	48615			2441	255	2078	2117	2441	2441		
DFGNYLFNFASAATK	15	Unmodified	_DFGNYLFNFASAATK_			0	0	0	Q96A49	Q96A49	Q96A49	SYAP1	Synapse-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.399012	1664.78347	1.1362	0.00094687	0.57866	0.00048226	1.7148	0.0014291	833.399300505344	19.25	0.097526	19.25	19.215	19.312	0	363	37	1.08195024817156	0.0240640669775463	1.08195024817156	436.945092344993	0	9.71826198613979						290	12	4	NaN	NaN	NaN	1.2426E-11	1	23474	165.72	148.73	1	89252			2442	2470	2079	2118	2442	2442		
DFHVDEQTTVK	11	Unmodified	_DFHVDEQTTVK_			0	0	0	CON__P34955	CON__P34955	CON__P34955			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.817324	1317.62009	1.5436	0.0010185	-0.016625	-1.0969E-05	1.527	0.0010075	659.817456423269	5.5405	0.13298	5.5405	5.5051	5.6381	0	564	31	0.946969335010767	0.0202370558589571	0.946969335010767	383.263691619913	0	8.19047507587351						233	16	2	NaN	NaN	NaN	0.0060198	1	12902	56.202	47.728	1	90873		+	2443	32	2080	2119	2443	2443		
DFHVHCYR	8	Unmodified	_DFHVHCYR_			0	0	0	Q93052	Q93052	Q93052	LPP	Lipoma-preferred partner	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.503025	1132.48725	-0.49699	-0.00018811	1.211	0.00045837	0.714	0.00027025	378.503670025133	3.4657	0.062192	3.4657	3.4479	3.51	0	906	16	0.714399420407021	0.0102823001644037	0.714399420407021	434.434997340066	0	6.25279208937133						57	8	2	NaN	NaN	NaN	0.05753	1	7590	37.608	25.541	1	12426			2444	2455	2081	2120	2444	2444		
DFIATLEAEAFDDVVGETVGK	21	Unmodified	_DFIATLEAEAFDDVVGETVGK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1113.54426	2225.07396	0.50998	0.00056789	0.20608	0.00022948	0.71607	0.00079737	1114.04581999592	20.208	0.035463	20.208	20.199	20.235	0	105	28	1.25339330680955	0.0178372338403638	1.25339330680955	505.128755744548	0	7.18856538227595						77	5	3	NaN	NaN	NaN	1.0426E-05	1	34940	63.79	58.708	1	45681			2445	869	2082	2121	2445	2445		
DFIDSLGLLHEQNMAK	16	Unmodified	_DFIDSLGLLHEQNMAK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.973338	1829.89818	-0.44886	-0.00027424	-0.94787	-0.00057912	-1.3967	-0.00085337	611.307204323143	15.872	0.14188	15.872	15.828	15.97	0	636	64	0.898312834727904	0.042654192426229	0.898312834727904	543.767067139671	0	25.8194519995333						689	17	5	NaN	NaN	NaN	0.00012616	1	27965	68.548	62.85	1	242650			2446	2115	2083	2122	2446	2446		
DFIDSLGLLHEQNMAK	16	Unmodified	_DFIDSLGLLHEQNMAK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.956368	1829.89818	1.1638	0.001066	1.804	0.0016524	2.9678	0.0027184	915.958301655881	15.881	0.15074	15.881	15.828	15.978	0	177	88	1.2057522832638	0.057657141640111	1.2057522832638	486.579624430447	0	23.2674577642416						868	18	5	NaN	NaN	NaN	5.2068E-12	1	27966	146.58	142.02	1	267490			2447	2115	2083	2122	2447	2447		
DFIDSLGLLHEQNMAK	16	Oxidation (M)	_DFIDSLGLLHEQNM(Oxidation (M))AK_	DFIDSLGLLHEQNM(1)AK	DFIDSLGLLHEQNM(81)AK	0	1	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.304976	1845.8931	-0.30872	-0.00019027	-0.69874	-0.00043064	-1.0075	-0.00062091	616.304616807328	15.109	0.079795	15.109	15.074	15.154	-1.7764E-15	687	67	0.863749705078866	0.0447753579488978	0.863749705078866	522.81125402364	0	27.1016718164705						375	10	3	NaN	NaN	NaN	0.00017847	1	28378	80.623	67.449	1	83234			2448	2115	2083	2123	2448	2448	588	
DFIHTASISFLTPLR	15	Unmodified	_DFIHTASISFLTPLR_			0	0	0	Q9NR46	Q9NR46	Q9NR46	SH3GLB2	Endophilin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.313912	1716.91991	-1.1099	-0.00063634	-1.1501	-0.00065938	-2.26	-0.0012957	573.313578089841	17.752	0.088668	17.752	17.708	17.796	0	735	49	0.831145085810763	0.0326272809227941	0.831145085810763	503.35774093691	0	19.7597202926264						275	11	3	NaN	NaN	NaN	1.9147E-08	1	24977	123.42	121.71	1	69969			2449	3014	2084	2124	2449	2449		
DFIHVSFHDK	10	Unmodified	_DFIHVSFHDK_			0	0	0	Q8NCG7	Q8NCG7	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.540134	1243.59857	-1.6129	-0.00067023	-0.59671	-0.00024796	-2.2096	-0.00091819	415.539817801311	8.5027	0.070946	8.5027	8.4761	8.547	0	861	19	0.745211914437924	0.0123121104560218	0.745211914437924	452.68596133002	0	7.47910688195242						111	9	3	NaN	NaN	NaN	0.068858	1	10729	8.9771	8.4142	1	24702			2450	2301	2085	2125	2450	2450		
DFIIFEAAPQETR	13	Unmodified	_DFIIFEAAPQETR_			0	0	0	P60510	P60510	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.888281	1535.76201	1.6723	0.0012858	-3.7773	-0.0029043	-2.105	-0.0016185	768.88653961981	15.597	0.17734	15.597	15.517	15.695	0	414	52	1.04781950764076	0.0341825748875688	1.04781950764076	423.454743386282	0	13.8141859086865						469	21	3	NaN	NaN	NaN	0.0015692	1	19604	81.799	74.648	1	124130			2451	1306	2086	2126	2451	2451		
DFILPISDVR	10	Unmodified	_DFILPISDVR_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.826963	1173.63937	0.48793	0.00028682	-1.3611	-0.0008001	-0.87319	-0.00051328	587.826496322048	15.996	0.15959	15.996	15.925	16.085	0	582	49	0.934820374997243	0.0324196809968852	0.934820374997243	378.827970301146	0	13.1377987454509						432	19	4	NaN	NaN	NaN	0.0067053	1	8707	52.591	33.104	1	190820			2452	2083	2087	2127	2452	2452		
DFINFISDK	9	Unmodified	_DFINFISDK_			0	0	0	Q9H3N1	Q9H3N1	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.776939	1097.53933	0.097043	5.3352E-05	0.11599	6.3766E-05	0.21303	0.00011712	549.776832357958	15.118	0.17736	15.118	15.056	15.234	0	636	43	0.898312834727904	0.0284262615360348	0.898312834727904	364.326660559962	0	11.5287732037855						494	21	4	NaN	NaN	NaN	8.0662E-06	1	6645	130.31	106.74	1	226830			2453	2880	2088	2128	2453	2453		
DFLAGGIAAAISK	13	Unmodified	_DFLAGGIAAAISK_			0	0	0	P12236	P12236	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.34552	1232.67649	1.2793	0.00078976	0.039709	2.4514E-05	1.319	0.00081428	617.345467561397	15.615	0.34582	15.615	15.562	15.908	0	450	76	1.02367897599655	0.0503657802476892	1.02367897599655	414.606267981504	0	20.3989421216183						999	40	4	NaN	NaN	NaN	0.0022946	1	10413	67.548	63.008	1	425440			2454	665	2089	2129	2454	2454		
DFLAGGVAAAISK	13	Unmodified	_DFLAGGVAAAISK_			0	0	0	P05141	P05141	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.337695	1218.66084	1.9951	0.0012177	0.54571	0.00033306	2.5408	0.0015507	610.338141357621	13.859	0.32807	13.859	13.779	14.107	0	456	124	1.01965166402748	0.0827142096833094	1.01965166402748	413.027735104783	0	33.5048368886483						1579	38	5	NaN	NaN	NaN	0.00010402	1	9992	105.94	97.761	1	944650			2455	525	2090	2130	2455	2455		
DFLDGVYAFEYYPSTPGR	18	Unmodified	_DFLDGVYAFEYYPSTPGR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1048.98364	2095.95272	1.6767	0.0017589	-0.33913	-0.00035574	1.3376	0.0014031	1049.48455280769	18.772	0.11527	18.772	18.727	18.843	0	183	58	1.20177511391933	0.0377805319410041	1.20177511391933	484.511269587365	0	15.231712892376						511	14	4	NaN	NaN	NaN	8.7858E-05	1	33250	66.485	60.281	1	107790			2456	326	2091	2131	2456	2456		
DFLFPHLR	8	Unmodified	_DFLFPHLR_			0	0	0	Q9H2M9	Q9H2M9	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.784902	1043.55525	0.0036697	1.9185E-06	0.62198	0.00032516	0.62565	0.00032708	522.785052867752	13.203	0.13302	13.203	13.132	13.265	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	359.613436446236	0	9.07356412693321						244	16	2	NaN	NaN	NaN	0.0030179	1	5321	69.093	63.345	1	63106			2457	2870	2092	2132	2457	2457		
DFLHLFEK	8	Unmodified	_DFLHLFEK_			0	0	0	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.776742	1047.53893	-0.294	-0.00015429	-0.95484	-0.00050108	-1.2488	-0.00065536	524.776104015147	15.207	0.10646	15.207	15.154	15.26	0	663	28	0.880024865079826	0.0183006625091034	0.880024865079826	357.120806389426	0	7.42654851248881						198	13	3	NaN	NaN	NaN	0.0022187	1	5409	77.072	40.502	1	54054			2458	9	2093	2133	2458	2458		
DFLIPIGK	8	Unmodified	_DFLIPIGK_			0	0	0	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.770929	901.527304	-1.9888	-0.00089849	-1.2451	-0.00056249	-3.2339	-0.001461	451.770460965253	14.666	0.088677	14.666	14.622	14.71	0	774	49	0.804600385996946	0.0326817653854051	0.804600385996946	327.19811365105	0	13.2903391186433						166	11	3	NaN	NaN	NaN	0.040654	1	2359	44.767	18.544	1	33147			2459	644	2094	2134	2459	2459		
DFLLDIAR	8	Unmodified	_DFLLDIAR_			0	0	0	Q16594;Q9HBM6	Q16594	Q16594	TAF9;TAF9B	Transcription initiation factor TFIID subunit 9;Transcription initiation factor TFIID subunit 9B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.768917	961.523281	-0.15274	-7.3586E-05	-1.5035	-0.00072432	-1.6562	-0.00079791	481.768216951684	15.535	0.10642	15.535	15.5	15.606	0	678	25	0.869855008346864	0.0162774195650359	0.869855008346864	353.403173660724	0	6.61316159370438						118	13	2	NaN	NaN	NaN	0.0033119	1	3474	56.091	38.396	1	26141			2460	1891	2095	2135	2460	2460		
DFLLKPELLR	10	Unmodified	_DFLLKPELLR_			0	0	1	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.251813	1242.73361	-2.1268	-0.00088315	-1.0571	-0.00043896	-3.1839	-0.0013221	415.251309758454	14.223	0.10639	14.223	14.187	14.294	0	789	64	0.794378096728713	0.0429814748995514	0.794378096728713	482.55610376005	0	26.1096990800731						483	13	3	NaN	NaN	NaN	0.0025674	1	10720	77.072	72.869	1	124270			2461	1705;51	2096	2136	2461	2461		
DFLLKPELLR	10	Unmodified	_DFLLKPELLR_			0	0	1	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.374081	1242.73361	1.8712	0.0011646	0.21475	0.00013366	2.0859	0.0012982	622.374445973551	14.232	0.31919	14.232	14.143	14.462	0	471	88	1.00957851518677	0.0584889418299939	1.00957851518677	408.858707637946	0	23.6868285210073						1116	37	5	NaN	NaN	NaN	3.3725E-06	1	10722	151.22	133.75	1	1087400			2462	1705;51	2096	2136	2462	2462		
DFLLQQTMLR	10	Unmodified	_DFLLQQTMLR_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.839548	1263.66454	0.88829	0.00056214	0.86057	0.0005446	1.7489	0.0011067	632.839956488706	15.163	0.18626	15.163	15.074	15.26	0	555	52	0.953040030838688	0.0343815779756202	0.953040030838688	385.891523344731	0	13.921303482218						620	22	4	NaN	NaN	NaN	0.00029684	1	11332	100.84	71.734	1	231360			2463	1545	2097	2137	2463	2463		
DFLLSLK	7	Unmodified	_DFLLSLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	418.249829	834.485105	-2.7831	-0.001164	-0.53791	-0.00022498	-3.321	-0.001389	418.249519687734	14.551	0.07093	14.551	14.524	14.595	1.7764E-15	792	16	0.792332785124922	0.0102279819264268	0.792332785124922	322.597427087445	0	4.16431165755938						60	9	2	NaN	NaN	NaN	0.040817	1	1375	49.058	4.6381	1	9911.7			2464	2167	2098	2138	2464	2464		
DFLPEGEDVHNFLLEQK	17	Unmodified	_DFLPEGEDVHNFLLEQK_			0	0	0	O43432	O43432	O43432	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.3337	2028.97927	-0.4333	-0.00029349	-1.6972	-0.0011496	-2.1305	-0.0014431	677.666899422513	15.464	0.071059	15.464	15.429	15.5	0	678	19	0.869855008346864	0.0122080642620082	0.869855008346864	526.152545498967	0	7.38433879834508						88	9	3	NaN	NaN	NaN	0.061803	1	32133	6.8556	5.2676	1	15635			2465	202	2099	2139	2465	2465		
DFLQGSSCIAGIYNETTK	18	Unmodified	_DFLQGSSCIAGIYNETTK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.650812	2002.93061	-0.68705	-0.00045939	2.3408	0.0015652	1.6537	0.0011058	668.986246928762	14.861	0.044322	14.861	14.843	14.888	1.7764E-15	549	19	0.957085760909907	0.0121355107414761	0.957085760909907	578.9672428622	0	7.34110095634207						70	6	3	NaN	NaN	NaN	0.027192	1	31682	25.185	23.711	1	10775			2466	718	2100	2140	2466	2466		
DFLQGSSCIAGIYNETTK	18	Unmodified	_DFLQGSSCIAGIYNETTK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.47258	2002.93061	0.8435	0.00084559	4.0125	0.0040224	4.856	0.004868	1002.4782112277	14.861	0.15075	14.861	14.772	14.923	0	231	73	1.16991841121525	0.0478047656707101	1.16991841121525	471.811966546106	0	19.2790029502524						639	18	4	NaN	NaN	NaN	4.6334E-20	1	31685	182.22	172.2	1	220040			2467	718	2100	2140	2467	2467		
DFLRPFEHIMK	11	Unmodified	_DFLRPFEHIMK_			0	0	1	Q9Y6D5;Q9Y6D6	Q9Y6D5;Q9Y6D6	Q9Y6D5	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.251707	1431.73329	-1.9638	-0.00093919	-0.4898	-0.00023425	-2.4536	-0.0011734	478.251653549674	13.274	0.15077	13.274	13.212	13.363	0	780	25	0.800512323802183	0.0163522499663766	0.800512323802183	485.577515344917	0	9.91900395893748						292	18	4	NaN	NaN	NaN	0.047764	1	16449	39.039	31.899	1	80461			2468	3459;3460	2101	2141	2468	2468		
DFLSVMLEK	9	Unmodified	_DFLSVMLEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.283543	1080.55253	-0.71827	-0.00038879	-2.9514	-0.0015976	-3.6697	-0.0019864	541.282074514336	17.246	0.26604	17.246	17.158	17.424	0	666	67	0.877991458330206	0.044762926451146	0.877991458330206	356.154380948307	0	18.1579356022011						827	31	3	NaN	NaN	NaN	0.010261	1	6222	67.464	49.061	1	427480			2469	3345	2102	2142	2469	2469		
DFLTPPLLSVR	11	Unmodified	_DFLTPPLLSVR_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.363713	1256.71287	0.5204	0.00032752	-0.79559	-0.00050072	-0.2752	-0.0001732	629.362809530659	17.566	0.23942	17.566	17.45	17.69	0	552	61	0.955063035883597	0.0404629208582415	0.955063035883597	386.733779488218	0	16.3846549648558						813	28	4	NaN	NaN	NaN	0.00078521	1	11125	92.732	61.814	1	236530			2470	452	2103	2143	2470	2470		
DFLWFFSK	8	Unmodified	_DFLWFFSK_			0	0	0	P35610	P35610	P35610	SOAT1	Sterol O-acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.273835	1088.53312	-0.55255	-0.00030129	-0.050623	-2.7603E-05	-0.60318	-0.0003289	545.273737159624	19.809	0.044334	19.809	19.791	19.836	0	681	22	0.867820189810857	0.0142437305757047	0.867820189810857	351.995934266049	0	5.77738949876448						66	6	2	NaN	NaN	NaN	0.0028401	1	6431	75.243	64.541	1	18545			2471	974	2104	2144	2471	2471		
DFLYSYFK	8	Unmodified	_DFLYSYFK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.7633	1081.51205	0.25047	0.0001357	-0.53003	-0.00028715	-0.27956	-0.00015145	541.762978456047	15.163	0.15073	15.163	15.101	15.251	0	648	46	0.890187667287968	0.0304841838877806	0.890187667287968	361.097689417632	0	12.3656716107918						463	18	4	NaN	NaN	NaN	0.0078814	1	6236	56.014	36.527	1	205520			2472	614	2105	2145	2472	2472		
DFMFQPLDGLK	11	Unmodified	_DFMFQPLDGLK_			0	0	0	Q15398	Q15398	Q15398	DLGAP5	Disks large-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.826106	1309.63766	-0.33971	-0.00022279	0.44986	0.00029503	0.11015	7.2241E-05	655.825878050056	17.255	0.097561	17.255	17.211	17.309	0	540	34	0.963152256458504	0.0222376640579702	0.963152256458504	389.838004502818	0	9.0007436758122						249	12	4	NaN	NaN	NaN	0.0071088	1	12638	53.517	48.977	1	47714			2473	1843	2106	2146	2473	2473		
DFMIQGGDFTR	11	Unmodified	_DFMIQGGDFTR_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.795337	1285.57612	1.2885	0.00082952	0.12172	7.8363E-05	1.4102	0.00090788	643.795950602929	12.352	0.14186	12.352	12.29	12.431	0	570	64	0.942920803299286	0.0425007768501061	0.942920803299286	381.723840611549	0	17.2056441128784						889	17	5	NaN	NaN	NaN	3.3191E-05	1	11914	124.81	117.66	1	1091100			2474	816	2107	2147	2474	2474		
DFMIQGGDPTGTGR	14	Unmodified	_DFMIQGGDPTGTGR_			0	0	0	Q9Y3C6	Q9Y3C6	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.332815	1450.65108	0.86441	0.00062785	1.0206	0.0007413	1.885	0.0013691	726.333634206227	9.3455	0.1685	9.3455	9.2923	9.4608	0	492	43	0.995464410099171	0.0282418742669083	0.995464410099171	402.507280203602	0	11.4193535034495						501	20	4	NaN	NaN	NaN	3.4672E-06	1	16990	93.772	86.621	1	150450			2475	3384	2108	2148	2475	2475		
DFMYVSQDPK	10	Unmodified	_DFMYVSQDPK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.278989	1228.54342	1.404	0.00086386	0.83246	0.0005122	2.2365	0.0013761	615.279534077807	8.8044	0.15105	8.8044	8.7511	8.9021	0	525	34	0.973257487423603	0.0222253598495629	0.973257487423603	394.199445362973	0	9.00195954195306						326	18	4	NaN	NaN	NaN	0.0010127	1	10254	83.623	79.084	1	118340			2476	1267	2109	2149	2476	2476		
DFNHINVELSLLGK	14	Unmodified	_DFNHINVELSLLGK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.622745	1597.84641	-1.0298	-0.00054952	-1.2558	-0.00067013	-2.2856	-0.0012197	533.621987935886	15.375	0.20405	15.375	15.331	15.535	0	747	34	0.822982596624503	0.0224546522756353	0.822982596624503	498.711357783832	0	13.607080114302						558	24	5	NaN	NaN	NaN	4.706E-06	1	21515	136.06	121.6	1	268550			2477	943	2110	2150	2477	2477		
DFNHINVELSLLGK	14	Unmodified	_DFNHINVELSLLGK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.93048	1597.84641	2.0493	0.0016393	0.3542	0.00028333	2.4035	0.0019226	799.930699197111	15.375	0.14189	15.375	15.313	15.455	0	339	55	1.09798411722691	0.036051375024104	1.09798411722691	443.573662536213	0	14.5643640996344						554	17	5	NaN	NaN	NaN	6.574E-17	1	21517	174.72	147.13	1	264300			2478	943	2110	2150	2478	2478		
DFNMPLTISSLK	12	Unmodified	_DFNMPLTISSLK_			0	0	0	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.35777	1364.70099	0.15288	0.00010447	-1.0845	-0.00074111	-0.93163	-0.00063663	683.357377727669	16.333	0.23053	16.333	16.28	16.51	0	510	43	0.983355730988811	0.0282653130088721	0.983355730988811	397.847718601748	0	11.4356279642936						452	27	4	NaN	NaN	NaN	4.5448E-05	1	14342	77.358	65.998	1	178990			2479	2548	2111	2151	2479	2479		
DFPLNDLLSATELDK	15	Unmodified	_DFPLNDLLSATELDK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.930342	1689.84613	1.9898	0.0016832	0.41286	0.00034925	2.4026	0.0020325	845.930543371915	19.827	0.27488	19.827	19.596	19.871	0	327	61	1.10599442759226	0.0400350261714058	1.10599442759226	446.600637391481	0	16.1661467364337						620	32	3	NaN	NaN	NaN	1.027E-08	1	24211	130.65	104.07	1	156020			2480	1737	2112	2152	2480	2480		
DFPLSGYVELR	11	Unmodified	_DFPLSGYVELR_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.335153	1294.65575	1.0076	0.00065325	-1.5176	-0.0009839	-0.50999	-0.00033064	648.334009345701	16.049	0.29263	16.049	15.899	16.191	0	522	70	0.975277694896658	0.046451948393855	0.975277694896658	394.793494214312	0	18.8038003077843						933	34	4	NaN	NaN	NaN	0.00073231	1	12208	65.933	40.679	1	317640			2481	338	2113	2153	2481	2481		
DFPYEEDSRPR	11	Unmodified	_DFPYEEDSRPR_			0	0	1	Q96I25	Q96I25	Q96I25	RBM17	Splicing factor 45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.817855	1409.62116	2.4041	0.0016969	-0.4155	-0.00029326	1.9886	0.0014036	705.817464523253	6.1081	0.1596	6.1081	6.0372	6.1968	0	459	40	1.01763759082241	0.0261938098951453	1.01763759082241	411.585935172393	0	10.5941484853253						366	19	3	NaN	NaN	NaN	0.0097899	1	15735	87.895	78.918	1	107680			2482	2555	2114	2154	2482	2482		
DFQQALYELSYHVIK	15	Unmodified	_DFQQALYELSYHVIK_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.652593	1852.93595	-0.27223	-0.00016842	0.41114	0.00025435	0.13891	8.5934E-05	618.987311870162	18.718	0.0532	18.718	18.701	18.754	0	615	19	0.912521036363781	0.0121725500979557	0.912521036363781	552.315966501006	0	7.36760414743378						137	7	4	NaN	NaN	NaN	0.0020182	1	28561	54.199	53.523	1	30446			2483	2328	2115	2155	2483	2483		
DFQSGQHVIVR	11	Unmodified	_DFQSGQHVIVR_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.336018	1284.65748	1.7068	0.0010981	-0.12017	-7.7311E-05	1.5867	0.0010208	643.335596946116	5.3632	0.17736	5.3632	5.2923	5.4697	0	522	37	0.975277694896658	0.0242441707123356	0.975277694896658	394.825924789724	0	9.81487341743434						330	21	3	NaN	NaN	NaN	3.2664E-05	1	11900	103.87	87.415	1	105530			2484	1082	2116	2156	2484	2484		
DFQYNEEEMK	10	Unmodified	_DFQYNEEEMK_			0	0	0	P21283	P21283	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.774267	1331.53398	1.2456	0.00083056	-0.21155	-0.00014105	1.0341	0.00068951	666.774075758018	7.1368	0.10639	7.1368	7.1014	7.2077	0	498	28	0.991429299781895	0.0181617640607624	0.991429299781895	401.214307674091	0	7.34975211584123						247	13	4	NaN	NaN	NaN	0.0085754	1	13331	61.48	26.699	1	61611			2485	790	2117	2157	2485	2485		
DFSAEYEEDGK	11	Unmodified	_DFSAEYEEDGK_			0	0	0	P04114	P04114	P04114	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.262047	1288.50954	1.6678	0.0010762	1.0806	0.00069726	2.7484	0.0017735	645.263151461267	6.2057	0.19512	6.2057	6.1347	6.3299	0	573	43	0.940896116921038	0.0283436532440857	0.940896116921038	380.894962280366	0	11.4741197664011						352	23	4	NaN	NaN	NaN	8.4927E-08	1	12007	104.39	102.42	1	84393			2486	507	2118	2158	2486	2486		
DFSALESQLQDTQELLQEENR	21	Unmodified	_DFSALESQLQDTQELLQEENR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1247.09062	2492.16669	0.17455	0.00021768	0.06848	8.54E-05	0.24303	0.00030308	1247.59176288775	19.029	0.053186	19.029	19.002	19.055	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.159300755095	0	9.56330242344507						184	7	4	NaN	NaN	NaN	3.1612E-06	1	36789	60.734	54.629	1	31237			2487	972	2119	2159	2487	2487		
DFSALESQLQDTQELLQEENR	21	Unmodified	_DFSALESQLQDTQELLQEENR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	831.729507	2492.16669	1.2234	0.0010176	-0.31007	-0.0002579	0.91336	0.00075967	832.064068405271	19.029	0.062075	19.029	19.002	19.064	0	429	52	1.03776581230406	0.034210897957768	1.03776581230406	626.924604648915	0	20.6671422613545						346	8	4	NaN	NaN	NaN	1.5404E-16	1	36790	130.12	120.61	1	87876			2488	972	2119	2159	2488	2488		
DFSHPQMPK	9	Unmodified	_DFSHPQMPK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.755484	1085.49641	1.5637	0.00085027	-0.059519	-3.2364E-05	1.5042	0.00081791	543.755447195825	5.7179	0.39904	5.7179	5.5317	5.9307	0	678	88	0.869855008346864	0.0589524905454942	0.869855008346864	352.833612115915	0	23.9125141348864						1449	46	2	NaN	NaN	NaN	9.654E-05	1	6346	106.93	86.268	1	669230			2489	1113	2120	2160	2489	2489		
DFSLEQLR	8	Unmodified	_DFSLEQLR_			0	0	0	O15173	O15173	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.261456	1006.50836	-0.5966	-0.00030084	5.0963	0.0025699	4.4997	0.002269	504.261651127385	12.183	0.13302	12.183	12.121	12.254	0	702	40	0.853568545818287	0.0264820512722772	0.853568545818287	346.567730995714	0	10.7522992342072						381	16	4	NaN	NaN	NaN	0.0088558	1	4428	70.67	42.965	1	150220			2490	152	2121	2161	2490	2490		
DFSPSGIFGAFQR	13	Unmodified	_DFSPSGIFGAFQR_			0	0	0	P56134	P56134	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.848958	1427.68336	0.67327	0.00048128	-0.61253	-0.00043786	0.060738	4.3419E-05	714.84845157556	17.92	0.28374	17.92	17.805	18.089	0	510	46	0.983355730988811	0.0302821710490335	0.983355730988811	397.671667538382	0	12.2461903442027						873	33	5	NaN	NaN	NaN	1.6488E-07	1	16310	135.63	131.43	1	468290			2491	1281	2122	2162	2491	2491		
DFSSVFQFLR	10	Unmodified	_DFSSVFQFLR_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.316763	1244.61897	0.54635	0.00034055	-2.0093	-0.0012525	-1.463	-0.0009119	623.315841468294	19.809	0.079808	19.809	19.782	19.862	0	615	37	0.912521036363781	0.0243451033539596	0.912521036363781	369.546266593534	0	9.85910647072785						262	10	4	NaN	NaN	NaN	0.00088008	1	10764	81.642	51.05	1	119590			2492	928	2123	2163	2492	2492		
DFSVFFQK	8	Unmodified	_DFSVFFQK_			0	0	0	O95202	O95202	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.255643	1016.49673	-1.0115	-0.00051509	-1.28	-0.00065183	-2.2914	-0.0011669	509.255143705598	15.065	0.16845	15.065	15.003	15.171	0	717	34	0.84338031290707	0.022426576308619	0.84338031290707	342.385730424081	0	9.10448061547766						389	20	4	NaN	NaN	NaN	0.0014905	1	4660	92.677	86.929	1	127660			2493	411	2124	2164	2493	2493		
DFSYNYFGFK	10	Unmodified	_DFSYNYFGFK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.287671	1286.56079	1.206	0.00077699	-1.6488	-0.0010623	-0.44287	-0.00028534	644.28644978535	15.553	0.10642	15.553	15.508	15.615	0	549	34	0.957085760909907	0.0222468989208282	0.957085760909907	387.455113679808	0	9.00616757917072						305	13	4	NaN	NaN	NaN	0.00055093	1	11947	69.905	55.91	1	116520			2494	828	2125	2165	2494	2494		
DFTPVCTTELGR	12	Unmodified	_DFTPVCTTELGR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.332284	1394.65001	1.8366	0.0012826	1.8529	0.0012939	3.6895	0.0025765	698.334228918611	10.347	0.42565	10.347	10.135	10.56	0	498	76	0.991429299781895	0.0504424030257907	0.991429299781895	401.02773740572	0	20.4036765497958						1647	49	5	NaN	NaN	NaN	4.3515E-11	1	15279	174.8	154.57	1	1650600			2495	893	2126	2166	2495	2495		
DFTVASPAEFVTR	13	Unmodified	_DFTVASPAEFVTR_			0	0	0	Q13085;O00763	Q13085	Q13085	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.361899	1438.70924	1.3527	0.0009744	-1.0302	-0.0007421	0.32248	0.0002323	720.361969179913	14.382	0.28374	14.382	14.276	14.56	0	480	49	1.00353128488872	0.0322541328760771	1.00353128488872	405.80087263374	0	13.0426977855585						462	33	4	NaN	NaN	NaN	2.744E-05	1	16634	75.474	61.48	1	100360			2496	1625	2127	2167	2496	2496		
DFTVSALHGDMDQK	14	Unmodified	_DFTVSALHGDMDQK_			0	0	0	Q14240	Q14240	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.908445	1562.70351	-1.3406	-0.00069965	2.5522	0.001332	1.2116	0.00063236	521.909208184037	9.4342	0.053203	9.4342	9.4076	9.4608	0	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	497.570339864492	0	12.3733196446445						148	7	3	NaN	NaN	NaN	0.065603	1	20427	10.972	10.738	1	29858			2497	1739	2128	2168	2497	2497		
DFTVSALHGDMDQK	14	Unmodified	_DFTVSALHGDMDQK_			0	0	0	Q14240	Q14240	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.35903	1562.70351	1.535	0.0012009	1.8208	0.0014245	3.3558	0.0026254	782.361183763931	9.4342	0.31039	9.4342	9.2834	9.5938	0	420	55	1.04379886199097	0.0361908186814239	1.04379886199097	421.764884113909	0	14.6235227906296						532	36	4	NaN	NaN	NaN	1.0659E-08	1	20428	160.62	152.62	1	213460			2498	1739	2128	2168	2498	2498		
DFTVSAMHGDMDQK	14	Unmodified	_DFTVSAMHGDMDQK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.893919	1580.65993	-0.082732	-4.3674E-05	0.044619	2.3554E-05	-0.038113	-2.012E-05	527.894183964508	8.0414	0.12429	8.0414	7.997	8.1213	0	741	49	0.827064408645228	0.032649966211981	0.827064408645228	501.231617802476	0	19.7870869723852						561	15	5	NaN	NaN	NaN	0.00015763	1	20977	78.043	75.371	1	309610			2499	1311	2129	2169	2499	2499		
DFTVSAMHGDMDQK	14	Unmodified	_DFTVSAMHGDMDQK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.33724	1580.65993	2.8564	0.0022604	-0.36451	-0.00028845	2.4919	0.0019719	791.337618354955	8.0414	0.23069	8.0414	7.9704	8.2011	0	405	82	1.05384839605172	0.0542301088337773	1.05384839605172	425.783090539304	0	21.9104222448286						1281	27	6	NaN	NaN	NaN	6.4046E-24	1	20978	212.27	187.45	1	1422000			2500	1311	2129	2169	2500	2500		
DFTVSAMHGDMDQK	14	Oxidation (M)	_DFTVSAM(Oxidation (M))HGDMDQK_	DFTVSAM(1)HGDMDQK	DFTVSAM(34)HGDM(-34)DQK	0	1	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.334698	1596.65484	2.3784	0.0019012	-1.4558	-0.0011636	0.92266	0.00073752	799.333668209541	5.4785	0.15069	5.4785	5.4164	5.5671	0	300	61	1.12400150285141	0.0400129835922274	1.12400150285141	454.087323051155	0	16.1649148694121						625	18	4	NaN	NaN	NaN	1.9799E-16	1	21464	168.05	156.69	2	182510			2501	1311	2129	2170	2501	2501	469;470	
DFTVSAMHGDMDQK	14	Oxidation (M)	_DFTVSAMHGDM(Oxidation (M))DQK_	DFTVSAMHGDM(1)DQK	DFTVSAM(-35)HGDM(35)DQK	0	1	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.334698	1596.65484	2.412	0.001928	0.29799	0.00023819	2.71	0.0021662	799.336087311806	6.2234	0.18626	6.2234	6.1436	6.3299	0	393	97	1.0618830335572	0.0642860444051108	1.0618830335572	428.991968068349	0	25.9710305534252						1071	22	5	NaN	NaN	NaN	6.6945E-11	1	21465	114.93	102.98	2	316150			2502	1311	2129	2170	2502	2502	469;470	
DFTVSAMHGDMDQK	14	2 Oxidation (M)	_DFTVSAM(Oxidation (M))HGDM(Oxidation (M))DQK_	DFTVSAM(1)HGDM(1)DQK	DFTVSAM(97)HGDM(97)DQK	0	2	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.332155	1612.64976	3.7745	0.0030473	-2.7208	-0.0021966	1.0537	0.00085066	807.330194711607	4.0953	0.079829	4.0953	4.0598	4.1396	0	318	58	1.11199926528787	0.0380516101948882	1.11199926528787	449.20020276975	0	15.3712250977382						219	10	2	NaN	NaN	NaN	2.4097E-05	1	21961	97.175	92.024	1	43631			2503	1311	2129	2171	2503	2503	469;470	
DFVAEPMGEK	10	Unmodified	_DFVAEPMGEK_			0	0	0	O75531	O75531	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.760432	1121.50631	1.5101	0.00084833	0.40297	0.00022637	1.9131	0.0010747	561.760936070116	7.6511	0.17741	7.6511	7.589	7.7664	0	639	43	0.896281965493857	0.0284380921957725	0.896281965493857	363.406667787737	0	11.5305146382275						319	21	2	NaN	NaN	NaN	0.0038918	1	7297	57.032	48.85	1	164740			2504	342	2130	2172	2504	2504		
DFVDDDDDDDLER	13	Unmodified	_DFVDDDDDDDLER_			0	0	0	Q9H9C1	Q9H9C1	Q9H9C1	VIPAS39	Spermatogenesis-defective protein 39 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.302629	1582.5907	1.7135	0.0013576	0.93397	0.00073998	2.6475	0.0020976	792.302636610603	8.8842	0.071074	8.8842	8.8576	8.9287	0	417	19	1.04580932352505	0.0120619374087725	1.04580932352505	422.530607157481	0	4.87329537247342						85	9	3	NaN	NaN	NaN	0.0072017	1	21037	30.068	28.694	1	14498			2505	2934	2131	2173	2505	2505		
DFVNYLVR	8	Unmodified	_DFVNYLVR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.274367	1024.53418	0.13102	6.7248E-05	-1.6034	-0.00082299	-1.4724	-0.00075574	513.27485840306	13.469	0.31037	13.469	13.371	13.682	0	678	88	0.869855008346864	0.0590425814772054	0.869855008346864	353.096613585701	0	23.9669087111191						710	36	4	NaN	NaN	NaN	0.0034438	1	4856	88.35	23.194	1	356480			2506	1575	2132	2174	2506	2506		
DFYVAFQDLPTR	12	Unmodified	_DFYVAFQDLPTR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.364441	1470.71433	1.1081	0.00081597	-0.17175	-0.00012647	0.93636	0.0006895	736.364052124512	15.801	0.18625	15.801	15.739	15.925	0	459	58	1.01763759082241	0.0382621221604766	1.01763759082241	411.419785357961	0	15.4689589187459						868	22	5	NaN	NaN	NaN	0.00052028	1	17605	72.922	65.365	1	341350			2507	1757	2133	2175	2507	2507		
DGAFAEFLR	9	Unmodified	_DGAFAEFLR_			0	0	0	P33527	P33527	P33527	ABCC1	Multidrug resistance-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.256174	1024.49779	-0.84368	-0.00043302	-1.4012	-0.00071919	-2.2449	-0.0011522	513.255497646079	14.347	0.10639	14.347	14.302	14.409	0	726	22	0.837263974740672	0.0142734399244295	0.837263974740672	339.867230411921	0	5.79396061686441						163	13	3	NaN	NaN	NaN	0.0010657	1	4847	87.251	73.603	1	35082			2508	947	2134	2176	2508	2508		
DGAGFLINLIDSPGHVDFSSEVTAALR	27	Unmodified	_DGAGFLINLIDSPGHVDFSSEVTAALR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	934.475001	2800.40317	0.91938	0.00085914	-1.4173	-0.0013245	-0.49796	-0.00046533	934.808043566404	20.049	0.1064	20.049	20.013	20.119	0	447	73	1.02569221487577	0.048294420782294	1.02569221487577	619.252521016379	0	29.1573255472972						435	13	6	NaN	NaN	NaN	6.563E-28	1	37899	200.81	188.34	1	176380			2509	679	2135	2177	2509	2509		
DGALHMIGSLAEILLK	16	Unmodified	_DGALHMIGSLAEILLK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.983286	1679.92803	-0.90416	-0.00050722	-0.43036	-0.00024143	-1.3345	-0.00074865	560.983132913055	20.102	0.0088704	20.102	20.102	20.111	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	531.822465286609	0	11.0867301414432						56	2	4	NaN	NaN	NaN	0.0028887	1	23922	47.57	44.899	1	20090			2510	429	2136	2178	2510	2510		
DGALHMIGSLAEILLK	16	Unmodified	_DGALHMIGSLAEILLK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.97129	1679.92803	1.2854	0.001081	-1.7079	-0.0014363	-0.42252	-0.00035533	840.969930322224	20.102	0.026593	20.102	20.102	20.128	0	303	40	1.12200181823275	0.0260066420921716	1.12200181823275	453.086188221323	0	10.5019886264872						108	4	4	NaN	NaN	NaN	0.043115	1	23923	23.931	15.557	1	42206			2511	429	2136	2178	2511	2511		
DGALHMIGSLAEILLK	16	Oxidation (M)	_DGALHM(Oxidation (M))IGSLAEILLK_	DGALHM(1)IGSLAEILLK	DGALHM(77)IGSLAEILLK	0	1	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.314924	1695.92294	-1.4171	-0.00080251	0.66686	0.00037765	-0.75022	-0.00042486	566.315649504927	19.197	0.11527	19.197	19.171	19.286	0	684	22	0.86578508874114	0.0142496650202144	0.86578508874114	524.388321801068	0	8.63073067825928						134	14	4	NaN	NaN	NaN	0.0029564	1	24389	77.157	74.678	1	29069			2512	429	2136	2179	2512	2512	61	
DGALTQLNVAFSR	13	Unmodified	_DGALTQLNVAFSR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.367515	1390.72048	1.0339	0.00072	-1.8828	-0.0013111	-0.8489	-0.00059114	696.867760983186	13.77	0.20392	13.77	13.691	13.895	0	492	37	0.995464410099171	0.0242106659523326	0.995464410099171	402.671101562394	0	9.79335416683926						243	24	2	NaN	NaN	NaN	1.1222E-05	1	15174	117.21	99.738	1	130260			2513	728	2137	2180	2513	2513		
DGANIVIAAK	10	Unmodified	_DGANIVIAAK_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.279649	970.544745	-1.1546	-0.00056144	0.19199	9.336E-05	-0.96258	-0.00046808	486.279660783936	6.7023	0.079788	6.7023	6.6757	6.7555	0	777	28	0.802556497112065	0.0183950017446732	0.802556497112065	326.018516575239	0	7.47250966477429						136	10	3	NaN	NaN	NaN	0.0067053	1	3648	60.892	53.541	1	35425			2514	2097	2138	2181	2514	2514		
DGATILTHAYSR	12	Unmodified	_DGATILTHAYSR_			0	0	0	Q14232	Q14232	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.833308	1303.65206	1.7242	0.0011256	0.44988	0.0002937	2.174	0.0014193	652.83333752791	6.986	0.13308	6.986	6.9505	7.0836	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.648720766003	0	8.15746710619817						245	16	3	NaN	NaN	NaN	3.7675E-07	1	12464	99.34	67.2	1	70074			2515	1738	2139	2182	2515	2515		
DGDDVIIIGVFK	12	Unmodified	_DGDDVIIIGVFK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.850635	1289.68672	0.35528	0.00022946	1.0781	0.00069628	1.4334	0.00092574	645.85131797162	17.229	0.23943	17.229	17.176	17.415	0	495	64	0.993446994398923	0.0424009137494717	0.993446994398923	402.164793060385	0	17.1646346506336						745	28	4	NaN	NaN	NaN	2.0609E-07	1	12064	124.81	119.9	1	326280			2516	680	2140	2183	2516	2516		
DGDSVMVLPTIPEEEAK	17	Unmodified	_DGDSVMVLPTIPEEEAK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.445499	1828.87645	1.8039	0.0016514	2.2283	0.0020399	4.0322	0.0036912	915.448146119404	14.764	0.26601	14.764	14.648	14.914	0	282	115	1.13599383354359	0.0759306569486571	1.13599383354359	458.43062606397	0	30.6418376355435						2875	31	7	NaN	NaN	NaN	2.6238E-10	1	27934	83.214	63.657	1	3251400			2517	893	2141	2184	2517	2517		
DGDSVMVLPTIPEEEAK	17	Oxidation (M)	_DGDSVM(Oxidation (M))VLPTIPEEEAK_	DGDSVM(1)VLPTIPEEEAK	DGDSVM(72)VLPTIPEEEAK	0	1	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.442957	1844.87136	2.8064	0.0025915	-0.85031	-0.00078521	1.9561	0.0018063	923.442394787709	12.751	0.20397	12.751	12.626	12.83	0	279	76	1.13799159301878	0.0499508950067746	1.13799159301878	459.20686413208	0	20.1563825228305						1033	24	5	NaN	NaN	NaN	0.00044407	1	28345	72.327	68.081	1	454190			2518	893	2141	2185	2518	2518	304	
DGDVTVTNDGATILSMMDVDHQIAK	25	Unmodified	_DGDVTVTNDGATILSMMDVDHQIAK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	882.751037	2645.23128	2.1649	0.001911	-0.20314	-0.00017932	1.9617	0.0017317	883.085531907636	17.122	0.23942	17.122	17.06	17.3	0	345	70	1.09397730668811	0.0460624846745625	1.09397730668811	660.67044792669	0	27.8178735486654						1461	28	7	NaN	NaN	NaN	5.8116E-19	1	37416	123.83	123.09	1	926250			2519	1113	2142	2186	2519	2519		
DGDVTVTNDGATILSMMDVDHQIAK	25	Oxidation (M)	_DGDVTVTNDGATILSM(Oxidation (M))MDVDHQIAK_	DGDVTVTNDGATILSM(0.71)M(0.29)DVDHQIAK	DGDVTVTNDGATILSM(3.9)M(-3.9)DVDHQIAK	0	1	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	888.082675	2661.2262	1.3157	0.0011684	0.68772	0.00061075	2.0034	0.0017792	888.417490683229	14.79	0.10645	14.79	14.746	14.852	0	351	46	1.08996939197032	0.0300531569340965	1.08996939197032	658.229317968278	0	18.1490133000567						266	13	5	NaN	NaN	NaN	9.046E-07	1	37477	66.913	60.808	2	50894			2520	1113	2142	2187	2520	2520	394	
DGEDQTQDTELVETRPAGDGTFQK	24	Unmodified	_DGEDQTQDTELVETRPAGDGTFQK_			0	0	1	P04439;P10321;P01893	P04439;P10321;P01893	P04439	HLA-A;HLA-C;HLA-H	HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, Cw-7 alpha chain;Putative HLA class I histocompatibility antigen, alpha chain H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.735209	2636.1838	2.9691	0.002612	0.11357	9.9914E-05	3.0827	0.002712	880.070170983797	8.2188	0.21294	8.2188	8.1745	8.3874	0	387	46	1.06589869032374	0.0301112043248537	1.06589869032374	643.724869066794	0	18.1849656420657						744	25	7	NaN	NaN	NaN	3.3987E-52	1	37378	271.97	259.11	1	628730			2521	514;624;492	2143	2188	2521	2521		
DGEEAGAYDGPR	12	Unmodified	_DGEEAGAYDGPR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.760006	1235.50546	2.5378	0.0015703	0.11564	7.1555E-05	2.6535	0.0016419	618.760043253005	4.1219	0.32809	4.1219	4.0066	4.3347	0	609	52	0.916577990479294	0.0344769526882287	0.916577990479294	371.219251342781	0	13.9633601269568						863	38	3	NaN	NaN	NaN	3.1908E-07	1	10478	143.39	140.8	1	624180			2522	904	2144	2189	2522	2522		
DGELHIAEHPAGHLVLK	17	Unmodified	_DGELHIAEHPAGHLVLK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.663604	1834.96898	-0.41677	-0.00025534	1.3811	0.00084612	0.96428	0.00059078	612.663877430265	7.589	0.053195	7.589	7.5624	7.6156	0	690	43	0.86171403876517	0.0284973564255872	0.86171403876517	521.602229347901	0	17.249672134167						211	7	3	NaN	NaN	NaN	5.8025E-07	1	28110	78.157	66.675	1	52833			2523	1842	2145	2190	2523	2523		
DGELHIAEHPAGHLVLK	17	Unmodified	_DGELHIAEHPAGHLVLK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.491767	1834.96898	1.3911	0.0012777	1.005	0.00092305	2.396	0.0022007	918.49323158528	7.589	0.035494	7.589	7.5713	7.6068	0	240	16	1.16393748060522	0.00997095816672822	1.16393748060522	469.695558637894	0	4.02368240933464						39	5	3	NaN	NaN	NaN	0.03915	1	28112	20.611	19.992	1	5051.7			2524	1842	2145	2190	2524	2524		
DGELPVEDDIDLSDVELDDLGK	22	Unmodified	_DGELPVEDDIDLSDVELDDLGK_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1201.06066	2400.10678	0.32416	0.00038934	0.40749	0.00048942	0.73165	0.00087875	1201.56281739027	18.532	0.079787	18.532	18.506	18.585	0	66	43	1.27913350869533	0.0276993500963147	1.27913350869533	515.26892943302	0	11.1580334445902						295	10	4	NaN	NaN	NaN	2.8358E-11	1	36346	69.369	68.274	1	64525			2525	1811	2146	2191	2525	2525		
DGENYVVLLDSTLPR	15	Unmodified	_DGENYVVLLDSTLPR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.935959	1689.85737	1.5052	0.0012733	2.9349	0.0024828	4.4401	0.003756	845.93882666039	17.832	0.15958	17.832	17.752	17.912	0	252	73	1.15595906938629	0.0479297749286622	1.15595906938629	466.77632887467	0	19.3540454653536						619	19	4	NaN	NaN	NaN	4.2333E-06	1	24213	102.03	90.01	1	143850			2526	1452;1818	2147	2192	2526	2526		
DGEQHEDLNEVAK	13	Unmodified	_DGEQHEDLNEVAK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.336609	1482.65867	3.0777	0.0022847	-1.6012	-0.0011886	1.4765	0.0010961	742.334849711656	3.8115	0.266	3.8115	3.7672	4.0332	0	504	58	0.987393073566096	0.0383309147863334	0.987393073566096	399.162286981665	0	15.4956075931881						728	31	4	NaN	NaN	NaN	0.00011781	1	17982	65.408	59.542	1	185890			2527	458	2148	2193	2527	2527		
DGEQHEDLNEVAK	13	Unmodified	_DGEQHEDLNEVAK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.226832	1482.65867	0.062479	3.0941E-05	2.7333	0.0013536	2.7958	0.0013846	495.228106575601	3.8115	0.15074	3.8115	3.7849	3.9356	0	789	31	0.794378096728713	0.0204488487727063	0.794378096728713	481.698397983755	0	12.399860639396						259	18	4	NaN	NaN	NaN	0.0038087	1	17983	44.598	39.102	1	59301			2528	458	2148	2193	2528	2528		
DGETGWFPEDFAR	13	Unmodified	_DGETGWFPEDFAR_			0	0	0	Q5VV41	Q5VV41	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.830963	1525.64737	1.5508	0.0011845	3.4152	0.0026086	4.9659	0.0037931	763.834257708545	9.3898	0.27487	9.3898	9.3278	9.6026	0	453	67	1.02166545906632	0.0442821075233106	1.02166545906632	412.909548458724	0	17.8967634268079						1199	32	6	NaN	NaN	NaN	0.058132	1	19283	24.821	0	1	688360			2529	2010	2149	2194	2529	2529		
DGETPDPEDPSR	12	Unmodified	_DGETPDPEDPSR_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.775853	1313.53715	2.8263	0.0018591	-0.665	-0.00043742	2.1613	0.0014216	657.775258021221	3.9179	0.25714	3.9179	3.8204	4.0775	0	576	40	0.938871150116794	0.0263245737571987	0.938871150116794	379.998400277719	0	10.6545993180043						450	30	3	NaN	NaN	NaN	0.0065392	1	12750	56.202	54.403	1	104950			2530	614	2150	2195	2530	2530		
DGFFGNPLAPNPADK	15	Unmodified	_DGFFGNPLAPNPADK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.37808	1558.74161	1.9743	0.0015407	1.7175	0.0013403	3.6918	0.002881	780.379554921524	14.311	0.15959	14.311	14.24	14.4	0	294	40	1.12800004657306	0.0259923277309138	1.12800004657306	455.797996101341	0	10.5028815643692						393	19	3	NaN	NaN	NaN	0.0046739	1	20315	65.173	60.97	1	107100			2531	639	2151	2196	2531	2531		
DGFIDLMELK	10	Unmodified	_DGFIDLMELK_			0	0	0	Q96C19;Q9BUP0	Q96C19	Q96C19	EFHD2;EFHD1	EF-hand domain-containing protein D2;EF-hand domain-containing protein D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.799557	1179.58456	0.10333	6.1048E-05	-0.7668	-0.00045303	-0.66347	-0.00039198	590.799140971955	18.133	0.15959	18.133	18.089	18.248	0	597	64	0.924688525662974	0.0425891846229369	0.924688525662974	374.700181798989	0	17.2578925530017						576	19	5	NaN	NaN	NaN	2.5759E-05	1	8869	105.36	44.466	1	266990			2532	2488	2152	2197	2532	2532		
DGFVTVDELK	10	Unmodified	_DGFVTVDELK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.787504	1121.56045	0.56659	0.0003183	1.1268	0.000633	1.6933	0.0009513	561.788410029588	11.518	0.16855	11.518	11.456	11.624	0	612	28	0.914549654013882	0.0182575606051391	0.914549654013882	370.813267869549	0	7.40270982729515						369	20	3	NaN	NaN	NaN	0.010257	1	7304	50.834	39.474	1	130160			2533	241	2153	2198	2533	2533		
DGGAWGTEQR	10	Unmodified	_DGGAWGTEQR_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.741419	1075.46829	1.7648	0.00095079	0.17851	9.6173E-05	1.9433	0.001047	538.741535483728	3.9002	0.34584	3.9002	3.8558	4.2017	-4.4409E-16	714	37	0.845418525735192	0.0244534611468455	0.845418525735192	342.961671582438	0	9.92005693701259						612	40	4	NaN	NaN	NaN	4.708E-05	1	6090	111.39	90.117	1	163720			2534	600	2154	2199	2534	2534		
DGGLQNMELHGMIMLR	16	Unmodified	_DGGLQNMELHGMIMLR_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.62852	1813.86373	-1.8498	-0.0011203	0.39791	0.00024099	-1.4519	-0.00087933	605.629067169273	14.755	0.088697	14.755	14.728	14.817	0	714	31	0.845418525735192	0.0203835468475623	0.845418525735192	511.783050490208	0	12.339395776055						203	11	4	NaN	NaN	NaN	0.00013787	1	27569	55.578	52.493	1	37598			2535	1107	2155	2200	2535	2535		
DGHADAAQDTEQFVATVLQAASR	23	Unmodified	_DGHADAAQDTEQFVATVLQAASR_			0	0	0	Q6PJG6	Q6PJG6	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.050803	2400.13058	0.86994	0.00069686	1.2059	0.00096596	2.0758	0.0016628	801.386551404694	19.862	0.026591	19.862	19.853	19.88	0	420	19	1.04379886199097	0.0120636020914469	1.04379886199097	630.703268245601	0	7.28929063150861						39	4	3	NaN	NaN	NaN	0.032892	1	36347	25.233	25.175	1	5825.1			2536	2077	2156	2201	2536	2536		
DGHDQHVLELEAK	13	Unmodified	_DGHDQHVLELEAK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.865337	1489.71612	2.0006	0.0014922	0.24832	0.00018521	2.2489	0.0016774	745.865071153378	5.1947	0.0798	5.1947	5.1681	5.2479	0	405	28	1.05384839605172	0.018084171566231	1.05384839605172	426.00876166972	0	7.31036415068451						117	10	2	NaN	NaN	NaN	2.4668E-05	1	18213	75.012	52.056	1	29914			2537	914	2157	2202	2537	2537		
DGHHHYEGAVVILDAGAQYGK	21	Unmodified	_DGHHHYEGAVVILDAGAQYGK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	560.023809	2236.06613	0.64278	0.00035997	3.6058	0.0020193	4.2486	0.0023793	560.27735190962	8.9287	0.16863	8.9287	8.8576	9.0262	0	618	19	0.910492137470517	0.0121742377325349	0.910492137470517	733.846529692506	0	9.81230012209926						290	20	4	NaN	NaN	NaN	0.0081392	1	35051	59.67	56.925	1	80770			2538	1155	2158	2203	2538	2538		
DGHNLISLLEVLSGDSLPR	19	Unmodified	_DGHNLISLLEVLSGDSLPR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.032133	2034.07457	0.091348	6.2028E-05	-0.12025	-8.1652E-05	-0.0289	-1.9624E-05	679.366172437308	20.111	0.035461	20.111	20.102	20.137	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	593.574768045887	0	9.77086832299358						51	5	3	NaN	NaN	NaN	0.01091	1	32232	31.767	26.069	1	20854			2539	1816	2159	2204	2539	2539		
DGHPVVVNILIGR	13	Unmodified	_DGHPVVVNILIGR_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.904068	1387.79358	1.1263	0.00078269	-1.1059	-0.00076853	0.020377	1.416E-05	694.903811989065	13.026	0.15073	13.026	12.946	13.096	0	438	46	1.03173026378327	0.0301735847803846	1.03173026378327	417.34951035922	0	12.2056425753169						380	18	4	NaN	NaN	NaN	2.6033E-05	1	15085	72.922	68.394	1	110640			2540	6	2160	2205	2540	2540		
DGIDDESYGQIFK	13	Unmodified	_DGIDDESYGQIFK_			0	0	0	Q92769	Q92769	Q92769	HDAC2	Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.838453	1485.66235	1.4065	0.0010462	3.6775	0.0027355	5.084	0.0037817	743.840200513995	12.715	0.1419	12.715	12.68	12.822	0	444	40	1.02770517576159	0.0261684967549374	1.02770517576159	415.451019424988	0	10.5786454228974						325	17	3	NaN	NaN	NaN	3.8951E-05	1	18078	94.66	87.52	1	79353			2541	2431	2161	2206	2541	2541		
DGIEPGHIPGTVNIPFTDFLSQEGLEK	27	Unmodified	_DGIEPGHIPGTVNIPFTDFLSQEGLEK_			0	0	0	P25325	P25325	P25325	MPST	3-mercaptopyruvate sulfurtransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	970.822178	2909.4447	0.81397	0.00079022	0.28454	0.00027623	1.0985	0.0010665	971.157071379305	19.321	0.070919	19.321	19.277	19.348	0	450	55	1.02367897599655	0.0362158044532401	1.02367897599655	617.922564842969	0	21.8609186086019						241	9	3	NaN	NaN	NaN	0.019247	1	38087	40.363	40.039	1	46466			2542	836	2162	2207	2542	2542		
DGIQLSEYLPEVK	13	Unmodified	_DGIQLSEYLPEVK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.890489	1489.76642	0.98178	0.0007323	-0.54526	-0.0004067	0.43652	0.0003256	745.890674327339	16.103	0.17736	16.103	15.987	16.165	0	390	40	1.06389100039157	0.0261071745349262	1.06389100039157	430.068263882668	0	10.5535879361561						354	21	3	NaN	NaN	NaN	0.00028517	1	18223	61.194	50.944	1	101120			2543	2369	2163	2208	2543	2543		
DGLAFNALIHR	11	Unmodified	_DGLAFNALIHR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.835654	1225.65676	1.0662	0.00065445	0.023878	1.4657E-05	1.09	0.0006691	613.835750155317	12.476	0.20395	12.476	12.431	12.635	0	537	43	0.965173861991602	0.0283044424712918	0.965173861991602	390.935559710992	0	11.464476500627						549	24	4	NaN	NaN	NaN	1.2306E-07	1	10174	146.03	128.56	1	279520			2544	221	2164	2209	2544	2544		
DGLEMEK	7	Unmodified	_DGLEMEK_			0	0	0	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.189111	820.363669	-0.90924	-0.00037387	0.59327	0.00024395	-0.31597	-0.00012992	411.189592493388	4.2017	0.16847	4.2017	4.1573	4.3258	0	843	31	0.757518876820989	0.0205030308233051	0.757518876820989	308.508770870963	0	8.35010853455213						216	20	3	NaN	NaN	NaN	0.050934	1	1200	42.835	23.88	1	55772			2545	682	2165	2210	2545	2545		
DGLEVAVLPHNIR	13	Unmodified	_DGLEVAVLPHNIR_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.898983	1431.78341	1.5863	0.0011372	-1.2329	-0.00088387	0.3534	0.00025335	717.397631587845	11.553	0.16855	11.553	11.474	11.642	0	390	64	1.06389100039157	0.0421964183924164	1.06389100039157	430.228525016239	0	17.0638748135436						451	20	3	NaN	NaN	NaN	0.00025444	1	16456	99.855	84.707	1	113620			2546	1766	2166	2211	2546	2546		
DGLGFCALIHR	11	Unmodified	_DGLGFCALIHR_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	420.216885	1257.62883	-1.6881	-0.00070939	-1.286	-0.00054041	-2.9742	-0.0012498	420.216579190983	12.751	0.079829	12.751	12.724	12.804	0	840	22	0.759569036796863	0.0143491209396079	0.759569036796863	461.35090039904	0	8.71544197396412						143	10	4	NaN	NaN	NaN	0.014945	1	11138	45.489	32.662	1	31573			2547	671	2167	2212	2547	2547		
DGLGGLPDIVR	11	Unmodified	_DGLGGLPDIVR_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.308938	1110.60332	0.83379	0.00046385	-1.7298	-0.00096232	-0.89604	-0.00049847	556.30798112745	13.859	0.16846	13.859	13.788	13.957	0	630	40	0.902373728295776	0.0263903231913262	0.902373728295776	365.920252846951	0	10.7015014201717						466	20	4	NaN	NaN	NaN	0.0071088	1	7006	39.039	34.132	1	244200			2548	1072	2168	2213	2548	2548		
DGLLDDEEFALANHLIK	17	Unmodified	_DGLLDDEEFALANHLIK_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.326546	1911.95781	-0.038548	-2.4606E-05	0.32604	0.00020812	0.28749	0.00018351	638.661106666313	17.3	0.1685	17.3	17.255	17.424	0	549	37	0.957085760909907	0.0242710246218105	0.957085760909907	579.156625791109	0	14.6870064299118						455	20	5	NaN	NaN	NaN	0.00099352	1	29871	71.219	65.521	1	232780			2549	2897	2169	2214	2549	2549		
DGLLDDEEFALANHLIK	17	Unmodified	_DGLLDDEEFALANHLIK_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.98618	1911.95781	0.042441	4.0615E-05	1.9707	0.0018859	2.0131	0.0019265	957.48960608334	17.3	0.062065	17.3	17.273	17.335	0	114	64	1.24744674793813	0.0416487582410145	1.24744674793813	503.242803126729	0	16.8018698021369						263	8	3	NaN	NaN	NaN	6.8526E-19	1	29872	123.99	114.41	1	47748			2550	2897	2169	2214	2550	2550		
DGLLENQTPEFFQDVCK	17	Unmodified	_DGLLENQTPEFFQDVCK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.650812	2038.93061	-0.35449	-0.00024129	-1.0258	-0.00069824	-1.3803	-0.00093953	680.984144625963	16.023	0.1064	16.023	15.97	16.076	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	545.804179517603	0	11.0508131109422						238	13	4	NaN	NaN	NaN	1.0785E-06	1	32323	89.382	88.706	1	54870			2551	1127	2170	2215	2551	2551		
DGLLENQTPEFFQDVCK	17	Unmodified	_DGLLENQTPEFFQDVCK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.47258	2038.93061	1.7945	0.0018313	-0.3932	-0.00040125	1.4013	0.00143	1020.97388907967	16.023	0.23943	16.023	15.943	16.182	0	195	103	1.19381749893585	0.0676676830111818	1.19381749893585	481.391640223135	0	27.2861278578078						2166	28	7	NaN	NaN	NaN	3.093E-34	1	32324	194.55	186.18	1	1321300			2552	1127	2170	2215	2552	2552		
DGLLPENTFIVGYAR	15	Unmodified	_DGLLPENTFIVGYAR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.935762	1663.85697	1.7699	0.0014742	0.58807	0.00048982	2.358	0.0019641	832.936237902739	16.874	0.36356	16.874	16.777	17.14	0	324	76	1.1079963157843	0.0500748206757269	1.1079963157843	447.465841029529	0	20.2227854270493						1616	42	5	NaN	NaN	NaN	2.8014E-08	1	23457	136.06	116.74	1	889700			2553	653	2171	2216	2553	2553		
DGLQLLTDMK	10	Unmodified	_DGLQLLTDMK_			0	0	0	O75127	O75127	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.297181	1132.57981	0.57081	0.00032382	0.12613	7.1551E-05	0.69694	0.00039537	567.297214525579	14.391	0.10639	14.391	14.365	14.471	1.7764E-15	588	22	0.93076847747433	0.0141845894763903	0.93076847747433	377.344772998416	0	5.75060374903148						133	13	3	NaN	NaN	NaN	0.0038918	1	7606	49.16	39.767	1	29688			2554	303	2172	2217	2554	2554		
DGLSCLIVLLQR	12	Unmodified	_DGLSCLIVLLQR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.892312	1385.77007	0.22384	0.00015532	0.49525	0.00034365	0.71909	0.00049897	693.893122330658	19.88	0.026599	19.88	19.862	19.889	0	492	37	0.995464410099171	0.024207319296828	0.995464410099171	402.685252671357	0	9.79234454657023						69	4	2	NaN	NaN	NaN	0.057369	1	15029	32.14	23.667	1	12126			2555	2900	2173	2218	2555	2555		
DGLVSLLTTSEGADEPQR	18	Unmodified	_DGLVSLLTTSEGADEPQR_			0	0	0	P51570	P51570	P51570	GALK1	Galactokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.468352	1886.92215	1.7881	0.0016888	0.38415	0.00036282	2.1722	0.0020516	944.468898228492	15.446	0.11538	15.446	15.393	15.508	0	168	52	1.21171599086077	0.0338036309766956	1.21171599086077	488.875095569785	0	13.6383058810656						452	14	4	NaN	NaN	NaN	6.8734E-08	1	29304	94.507	86.542	1	123200			2556	1189	2174	2219	2556	2556		
DGMDNQGGYGSVGR	14	Unmodified	_DGMDNQGGYGSVGR_			0	0	0	P31942	P31942	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.796597	1411.57864	2.6167	0.0018495	-1.2578	-0.000889	1.3589	0.00096049	706.796104968805	4.8844	0.31912	4.8844	4.7958	5.1149	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	392.81381730506	0	9.80683690605105						669	37	5	NaN	NaN	NaN	2.59E-11	1	15795	172.51	160.55	1	348040			2557	930	2175	2220	2557	2557		
DGMVSFHDNPEK	12	Unmodified	_DGMVSFHDNPEK_			0	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.300984	1374.58741	1.8322	0.0012611	0.71013	0.00048878	2.5423	0.0017499	688.30174386108	5.78	0.13299	5.78	5.7268	5.8598	0	510	34	0.983355730988811	0.0222069226755673	0.983355730988811	397.819016234575	0	8.98386601510742						305	16	4	NaN	NaN	NaN	0.00050119	1	14641	67.548	63.008	1	120930			2558	3306	2176	2221	2558	2558		
DGNASGTTLLEALDCILPPTRPTDK	25	Unmodified	_DGNASGTTLLEALDCILPPTRPTDK_			0	0	1	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	664.587813	2654.32215	-0.71991	-0.00047845	-0.54409	-0.0003616	-1.264	-0.00084004	664.838709611574	19.614	0.062067	19.614	19.579	19.641	0	633	19	0.900343422309015	0.0121843709142423	0.900343422309015	724.961372487654	0	9.8109210796855						120	8	4	NaN	NaN	NaN	4.5501E-06	1	37459	75.312	75.163	1	23815			2559	1446	2177	2222	2559	2559		
DGNASGTTLLEALDCILPPTRPTDK	25	Unmodified	_DGNASGTTLLEALDCILPPTRPTDK_			0	0	1	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	885.781325	2654.32215	1.9808	0.0017545	0.78145	0.0006922	2.7622	0.0024467	886.116826140666	19.605	0.28378	19.605	19.543	19.827	0	444	349	1.02770517576159	0.23313683155896	1.02770517576159	620.636529033895	0	140.792551542311						7674	33	8	NaN	NaN	NaN	1.635E-63	1	37460	340.61	332.54	1	10551000			2560	1446	2177	2222	2560	2560		
DGNDLHMTYK	10	Unmodified	_DGNDLHMTYK_			0	0	0	O60884	O60884	O60884	DNAJA2	DnaJ homolog subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.266413	1192.51827	1.006	0.00060082	0.53185	0.00031765	1.5378	0.00091848	597.266581045423	4.7071	0.14189	4.7071	4.6361	4.778	0	630	34	0.902373728295776	0.0223302721813649	0.902373728295776	365.611977261616	0	9.04748743121968						235	17	3	NaN	NaN	NaN	2.5362E-05	1	9218	127.93	118.54	1	58904			2561	291	2178	2223	2561	2561		
DGNGYISAAELR	12	Unmodified	_DGNGYISAAELR_			0	0	0	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.309666	1264.60478	1.1163	0.00070698	1.5141	0.00095889	2.6304	0.0016659	633.310391023256	9.2656	0.21286	9.2656	9.1504	9.3632	0	543	43	0.961130371139249	0.028308359885891	0.961130371139249	389.164219284416	0	11.4621294935845						471	25	4	NaN	NaN	NaN	0.0022193	1	11348	69.276	49.042	1	183580			2562	619	2179	2224	2562	2562		
DGNPDNETYLHR	12	Unmodified	_DGNPDNETYLHR_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.548017	1429.62222	-0.34783	-0.0001661	0.30499	0.00014565	-0.042837	-2.0457E-05	477.54815324128	4.1573	0.10641	4.1573	4.1307	4.2371	0	843	28	0.757518876820989	0.0184540131906292	0.757518876820989	459.504882524536	0	11.1940565743423						202	13	3	NaN	NaN	NaN	0.0035932	1	16367	67.881	63.341	1	58586			2563	3058	2180	2225	2563	2563		
DGNPDNETYLHR	12	Unmodified	_DGNPDNETYLHR_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.818387	1429.62222	2.8322	0.0020273	6.2298	0.0044594	9.062	0.0064867	716.325094201591	4.113	0.3281	4.113	4.0332	4.3613	0	513	52	0.981336640919867	0.0343292904819641	0.981336640919867	396.849951790693	0	13.8826746140916						1059	38	5	NaN	NaN	NaN	0.030739	1	16368	39.702	18.614	1	304510			2564	3058	2180	2225	2564	2564		
DGNVLLHEMQIQHPTASLIAK	21	Unmodified	_DGNVLLHEMQIQHPTASLIAK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.410727	2314.21035	1.1776	0.0009096	0.07024	5.4254E-05	1.2479	0.00096386	772.745293079174	13.043	0.17736	13.043	12.999	13.176	0	504	64	0.987393073566096	0.0423891882940376	0.987393073566096	596.748171482143	0	25.618642952113						828	21	6	NaN	NaN	NaN	1.5099E-37	1	35768	218.03	206.55	1	558430			2565	1016	2181	2226	2565	2565		
DGPGETDAFGNSEGK	15	Unmodified	_DGPGETDAFGNSEGK_			0	0	0	O94925	O94925	O94925	GLS	Glutaminase kidney isoform, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.812967	1479.61138	1.7071	0.0012646	-0.15518	-0.00011496	1.5519	0.0011497	740.811982628436	5.2125	0.1685	5.2125	5.1681	5.3366	0	471	43	1.00957851518677	0.0282223642455827	1.00957851518677	408.138712783076	0	11.4093547372651						254	20	2	NaN	NaN	NaN	0.0040339	1	17882	38.584	31.894	1	83704			2566	397	2182	2227	2566	2566		
DGPGFYTTR	9	Unmodified	_DGPGFYTTR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.237981	1012.46141	0.57741	0.00029288	0.11331	5.7475E-05	0.69071	0.00035036	507.237948425977	6.0017	0.18627	6.0017	5.9396	6.1259	0	708	43	0.849494101904619	0.0285290397944454	0.849494101904619	344.88608856927	0	11.58250413191						447	22	3	NaN	NaN	NaN	0.052595	1	4559	23.053	16.823	1	105310			2567	1026	2183	2228	2567	2567		
DGPLGETVLECYNCGCR	17	Unmodified	_DGPLGETVLECYNCGCR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.41897	1998.82338	2.2801	0.002281	0.49948	0.00049969	2.7795	0.0027807	1000.92093860902	12.804	0.1064	12.804	12.751	12.857	0	249	31	1.15795408347545	0.0199487720168505	1.15795408347545	466.993533996356	0	8.04517871302471						344	13	4	NaN	NaN	NaN	8.3518E-05	1	31605	72.327	72.175	1	75517			2568	2442	2184	2229	2568	2568		
DGPLNMILDDGGDLTNLIHTK	21	Unmodified	_DGPLNMILDDGGDLTNLIHTK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	751.379092	2251.11545	0.91692	0.00068896	-0.49123	-0.0003691	0.4257	0.00031986	751.713058958088	19.774	0.26602	19.774	19.623	19.889	0	489	43	0.997481546940468	0.0282379706445135	0.997481546940468	602.946087784942	0	17.0689613049169						889	31	6	NaN	NaN	NaN	3.6283E-16	1	35190	139.5	134.67	1	424110			2569	822	2185	2230	2569	2569		
DGPLNMILDDGGDLTNLIHTK	21	Oxidation (M)	_DGPLNM(Oxidation (M))ILDDGGDLTNLIHTK_	DGPLNM(1)ILDDGGDLTNLIHTK	DGPLNM(130)ILDDGGDLTNLIHTK	0	1	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.71073	2267.11036	0.48791	0.0003692	-0.40064	-0.00030317	0.087267	6.6036E-05	757.044786588202	18.887	0.35468	18.887	18.71	19.064	0	492	37	0.995464410099171	0.024207319296828	0.995464410099171	601.700770512333	0	14.6319270936953						1030	41	5	NaN	NaN	NaN	4.6795E-16	1	35342	134.49	126.13	1	351730			2570	822	2185	2231	2570	2570	278	
DGPSLLVVEQVR	12	Unmodified	_DGPSLLVVEQVR_			0	0	0	Q8N1G4	Q8N1G4	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.366984	1310.71942	0.68416	0.00044906	0.16159	0.00010606	0.84575	0.00055512	656.366323907402	13.212	0.14188	13.212	13.167	13.309	0	501	31	0.98941132619024	0.0201811333938051	0.98941132619024	400.462971896283	0	8.16828799225266						304	17	5	NaN	NaN	NaN	0.0048078	1	12690	41.824	31.736	1	71101			2571	2241	2186	2232	2571	2571		
DGQAMLWDLNEGK	13	Unmodified	_DGQAMLWDLNEGK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.843016	1475.67148	1.4838	0.0010963	1.131	0.00083564	2.6148	0.0019319	738.844304881888	13.646	0.19509	13.646	13.567	13.762	0	447	73	1.02569221487577	0.0483211026601307	1.02569221487577	414.663193429058	0	19.5350831842766						1069	23	5	NaN	NaN	NaN	5.2693E-24	1	17757	244.44	224.26	1	1261300			2572	1435	2187	2233	2572	2572		
DGQILPVPNVVVR	13	Unmodified	_DGQILPVPNVVVR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.411726	1404.8089	0.86312	0.00060713	-1.7796	-0.0012518	-0.91651	-0.00064469	703.410311154396	15.526	0.070944	15.526	15.508	15.579	-1.7764E-15	546	25	0.959108205975751	0.016178442079587	0.959108205975751	387.926501646174	0	6.54362708911918						89	9	2	NaN	NaN	NaN	0.043347	1	15623	22.004	15.74	1	19724			2573	3151	2188	2234	2573	2573		
DGQILPVPNVVVR	13	Unmodified	_DGQILPVPNVVVR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.411726	1404.8089	1.0233	0.00071982	-0.48742	-0.00034286	0.53591	0.00037696	703.411254457797	14.577	0.13299	14.577	14.542	14.675	0	519	85	0.97729762293174	0.0564915970747152	0.97729762293174	395.283494382084	0	22.8489207084439						447	16	3	NaN	NaN	NaN	0.00043714	1	15625	51.872	41.784	1	124660			2574	3151	2188	2234	2574	2574		
DGQVINETSQHHDDLE	16	Unmodified	_DGQVINETSQHHDDLE_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.938009	1835.7922	0.53981	0.00033087	2.326	0.0014257	2.8658	0.0017566	612.939499323665	5.1681	0.32811	5.1681	5.1238	5.4519	0	744	61	0.82502364452135	0.0408181397382461	0.82502364452135	499.391565776736	0	24.7074551757877						1105	38	6	NaN	NaN	NaN	2.3921E-09	1	28116	188.88	180.92	1	1093300			2575	588	2189	2235	2575	2575		
DGQVINETSQHHDDLE	16	Unmodified	_DGQVINETSQHHDDLE_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.903376	1835.7922	3.7626	0.0034574	-0.87429	-0.00080338	2.8883	0.0026541	918.902872127385	5.1681	0.44335	5.1681	5.0972	5.5405	0	282	97	1.13599383354359	0.0639679733859324	1.13599383354359	458.417638121307	0	25.8135620186538						1851	51	6	NaN	NaN	NaN	7.5004E-44	1	28117	239.98	211.65	1	1320000			2576	588	2189	2235	2576	2576		
DGQWFTDWDAVPHSR	15	Unmodified	_DGQWFTDWDAVPHSR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.272775	1815.7965	0.027223	1.6505E-05	-0.39277	-0.00023813	-0.36555	-0.00022162	606.272214423861	14.32	0.11526	14.32	14.276	14.391	0	660	34	0.882057989648486	0.0223643734856528	0.882057989648486	533.958832972968	0	13.5384009971154						339	14	4	NaN	NaN	NaN	1.1388E-06	1	27617	106.47	90.179	1	159070			2577	1581	2190	2236	2577	2577		
DGQWFTDWDAVPHSR	15	Unmodified	_DGQWFTDWDAVPHSR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.905525	1815.7965	1.9978	0.0018158	1.7918	0.0016286	3.7896	0.0034444	909.408754203431	14.32	0.10638	14.32	14.276	14.382	0	279	46	1.13799159301878	0.0299622781618634	1.13799159301878	459.261721722802	0	12.0919412232668						350	13	3	NaN	NaN	NaN	0.0029217	1	27619	59.997	56.912	1	117170			2578	1581	2190	2236	2578	2578		
DGSAFEDGLR	10	Unmodified	_DGSAFEDGLR_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.743628	1065.4727	-0.21673	-0.00011568	3.0572	0.0016318	2.8405	0.0015161	533.745873826109	7.5003	0.19508	7.5003	7.456	7.6511	0	723	67	0.839303037468863	0.0448251357627677	0.839303037468863	340.521175158964	0	18.1864085141764						456	23	3	NaN	NaN	NaN	2.672E-05	1	5849	88.921	83.173	1	132010			2579	1273	2191	2237	2579	2579		
DGSCGVAYVVQEPGDYEVSVK	21	Unmodified	_DGSCGVAYVVQEPGDYEVSVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1129.51772	2257.02088	1.4514	0.0016393	-0.299	-0.00033773	1.1524	0.0013016	1130.01852972911	12.635	0.062052	12.635	12.6	12.662	0	99	97	1.25735632164274	0.0634691675508876	1.25735632164274	506.681376838065	0	25.57639759542						719	8	5	NaN	NaN	NaN	4.0769E-11	1	35246	94.119	90.678	1	164460			2580	792	2192	2238	2580	2580		
DGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFR	33	Unmodified	_DGSCSAEYIPFAPGDYDVNITYGGAHIPGSPFR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1177.53677	3529.58848	1.6355	0.0019259	1.0441	0.0012295	2.6796	0.0031553	1178.20745348614	18.098	0.053192	18.098	18.062	18.115	0	324	52	1.1079963157843	0.0340321108810946	1.1079963157843	668.259469207126	0	20.5255920343924						164	7	3	NaN	NaN	NaN	0.037158	1	38664	7.8687	7.8636	1	28718			2581	326	2193	2239	2581	2581		
DGSDYEGWCWPGSAGYPDFTNPTMR	25	Unmodified	_DGSDYEGWCWPGSAGYPDFTNPTMR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	956.055119	2865.14353	0.21677	0.00020725	1.1672	0.0011159	1.384	0.0013232	956.390307704324	17.991	0.044318	17.991	17.965	18.009	0	489	46	0.997481546940468	0.030261243599951	0.997481546940468	602.153326381359	0	18.2679153815309						124	6	2	NaN	NaN	NaN	0.0074827	1	38023	18.396	18.373	1	28438			2582	1771	2194	2240	2582	2582		
DGSEASLEWSSER	13	Unmodified	_DGSEASLEWSSER_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.81551	1451.61647	1.4147	0.0010282	0.46619	0.00033884	1.8809	0.001367	726.815397929883	8.068	0.12424	8.068	8.0237	8.1479	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	400.873202480759	0	9.79066188519778						236	15	3	NaN	NaN	NaN	1.0256E-07	1	17017	110.88	87.831	1	54982			2583	639	2195	2241	2583	2583		
DGSELILHFVTQCNTR	16	Unmodified	_DGSELILHFVTQCNTR_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.643992	1888.91015	-0.30904	-0.00019489	1.2861	0.00081104	0.97702	0.00061615	630.979127238184	15.092	0.079818	15.092	15.056	15.136	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	533.802305279061	0	9.84253982417647						166	10	4	NaN	NaN	NaN	0.025281	1	29350	25.705	25.606	1	30168			2584	313	2196	2242	2584	2584		
DGSELILHFVTQCNTR	16	Unmodified	_DGSELILHFVTQCNTR_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.462349	1888.91015	1.6203	0.0015319	2.3016	0.0021761	3.9218	0.0037079	945.966137956001	15.092	0.079818	15.092	15.056	15.136	0	195	31	1.19381749893585	0.0198995025431339	1.19381749893585	481.650119961738	0	8.02852847744566						238	10	4	NaN	NaN	NaN	0.010056	1	29351	32.759	30.917	1	53329			2585	313	2196	2242	2585	2585		
DGSIDLVINLPNNNTK	16	Unmodified	_DGSIDLVINLPNNNTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.95214	1725.88973	2.1714	0.001876	-0.23203	-0.00020046	1.9393	0.0016755	863.952146261356	14.701	0.22169	14.701	14.657	14.879	0	342	46	1.09598084995137	0.0300614391365961	1.09598084995137	442.481967330605	0	12.1367492238031						529	26	4	NaN	NaN	NaN	5.345E-12	1	25212	142.08	121.74	1	235970			2586	922	2197	2243	2586	2586		
DGSLASNPYSGDLTK	15	Unmodified	_DGSLASNPYSGDLTK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.86246	1523.71037	2.1387	0.0016315	-0.048228	-3.6791E-05	2.0905	0.0015947	762.863134751288	8.7245	0.23963	8.7245	8.6357	8.8753	0	438	70	1.03173026378327	0.0462534095691607	1.03173026378327	416.982052607367	0	18.6936860720888						768	28	4	NaN	NaN	NaN	1.7676E-08	1	19220	128.57	118.32	1	437550			2587	1729	2198	2244	2587	2587		
DGSLHVTCTDQETGK	15	Unmodified	_DGSLHVTCTDQETGK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.367583	1646.72061	3.3803	0.0027866	-2.9784	-0.0024553	0.40193	0.00033134	824.364676142049	3.7583	0.070942	3.7583	3.7406	3.8115	0	423	22	1.04178812298108	0.014077116606523	1.04178812298108	420.763741308938	0	5.68555171588417						72	9	2	NaN	NaN	NaN	0.00228	1	22933	50.116	42.976	1	14750			2588	1585	2199	2245	2588	2588		
DGSLIVSSSYDGLCR	15	Unmodified	_DGSLIVSSSYDGLCR_			0	0	0	P61964	P61964	P61964	WDR5	WD repeat-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.882869	1627.75119	1.5852	0.0012917	-0.74724	-0.00060891	0.83792	0.00068281	814.882702086765	11.766	0.18623	11.766	11.695	11.882	0	369	46	1.07793901817685	0.0300987514489623	1.07793901817685	435.406905387269	0	12.1576489981581						693	22	5	NaN	NaN	NaN	4.7794E-08	1	22394	99.276	89.026	1	170010			2589	1357	2200	2246	2589	2589		
DGSNIIYTAK	10	Unmodified	_DGSNIIYTAK_			0	0	0	Q9UDY4	Q9UDY4	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.279846	1080.54514	0.73545	0.00039808	0.050922	2.7563E-05	0.78637	0.00042564	541.280407566942	6.1879	0.2572	6.1879	6.117	6.3742	0	681	43	0.867820189810857	0.0284933997158956	0.867820189810857	352.028455930181	0	11.5582555279964						343	30	2	NaN	NaN	NaN	0.0080273	1	6217	40.386	35.847	1	118940			2590	3197	2201	2247	2590	2590		
DGSTTAGNSSQVSDGAAAILLAR	23	Unmodified	_DGSTTAGNSSQVSDGAAAILLAR_			0	0	0	P09110	P09110	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.53783	2161.0611	0.86098	0.00093118	-1.4566	-0.0015753	-0.59559	-0.00064415	1081.535447469	13.779	0.044329	13.779	13.744	13.788	1.7764E-15	126	22	1.23951419873743	0.0138905276222752	1.23951419873743	499.627166188062	0	5.5990362674695						50	6	2	NaN	NaN	NaN	0.055706	1	34189	30.172	29.808	1	14270			2591	597	2202	2248	2591	2591		
DGTAGIPNLQLYDVK	15	Unmodified	_DGTAGIPNLQLYDVK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.419945	1602.82534	1.9959	0.0016016	-2.7471	-0.0022043	-0.75115	-0.00060274	802.41641168033	14.462	0.13302	14.462	14.382	14.515	0	372	82	1.07593298845566	0.0541255369499021	1.07593298845566	434.653654230129	0	21.8655461584189						458	16	4	NaN	NaN	NaN	0.00035997	1	21682	65.408	47.677	1	186740			2592	2796	2203	2249	2592	2592		
DGTCTVTYLPTLPGDYSILVK	21	Unmodified	_DGTCTVTYLPTLPGDYSILVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1157.08778	2312.161	-0.16663	-0.0001928	-0.64974	-0.00075181	-0.81637	-0.00094461	1157.5891156597	18.656	0.097534	18.656	18.612	18.71	0	66	55	1.27913350869533	0.0356280865496466	1.27913350869533	515.381784982538	0	14.3550823402304						417	12	4	NaN	NaN	NaN	0.00085417	1	35737	49.487	46.046	1	92684			2593	326	2204	2250	2593	2593		
DGTDGETEVGEIQQNK	16	Unmodified	_DGTDGETEVGEIQQNK_			0	0	0	Q6NZY4	Q6NZY4	Q6NZY4	ZCCHC8	Zinc finger CCHC domain-containing protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.387027	1718.7595	2.244	0.0019307	-2.7706	-0.0023838	-0.52665	-0.00045312	860.885498834374	5.8687	0.070955	5.8687	5.8332	5.9041	0	378	31	1.07192009927972	0.0200616822933108	1.07192009927972	432.782197775681	0	8.09980049801345						161	9	3	NaN	NaN	NaN	2.5614E-13	1	25018	190.68	167.72	1	28500			2594	2054	2205	2251	2594	2594		
DGTIDFTPGSELLITK	16	Unmodified	_DGTIDFTPGSELLITK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.945992	1705.87743	1.499	0.0012801	4.7172	0.0040282	6.2162	0.0053083	853.950547706023	15.987	0.16846	15.987	15.925	16.094	0	303	40	1.12200181823275	0.0259887509871912	1.12200181823275	453.029771570273	0	10.4934570798366						404	20	3	NaN	NaN	NaN	8.5917E-05	1	24662	74.524	60.746	1	193110			2595	54	2206	2252	2595	2595		
DGTILCTLMNK	11	Unmodified	_DGTILCTLMNK_			0	0	0	Q99439	Q99439	Q99439	CNN2	Calponin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.315048	1264.61554	1.048	0.00066369	-1.1338	-0.00071804	-0.085828	-5.4356E-05	633.314022420366	14.285	0.19506	14.285	14.232	14.427	0	561	58	0.948993180460448	0.0384637307955292	0.948993180460448	384.249814482121	0	15.5740649424913						480	23	4	NaN	NaN	NaN	2.5859E-05	1	11352	83.623	74.109	1	115600			2596	2639	2207	2253	2596	2596		
DGTSPEEEIEIER	13	Unmodified	_DGTSPEEEIEIER_			0	0	0	Q9H501	Q9H501	Q9H501	ESF1	ESF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.3441	1502.67365	1.349	0.0010149	1.7325	0.0013035	3.0815	0.0023183	752.344190294476	8.8044	0.15971	8.8044	8.7156	8.8753	0	471	28	1.00957851518677	0.0181391858417761	1.00957851518677	408.080661811447	0	7.33202108769461						267	19	3	NaN	NaN	NaN	0.00018838	1	18588	64.906	60.077	1	60106			2597	2898	2208	2254	2597	2597		
DGTTHQTSLELFMYLNEVAGK	21	Unmodified	_DGTTHQTSLELFMYLNEVAGK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.382614	2353.12601	0.28256	0.00022192	-1.2186	-0.00095708	-0.93606	-0.00073516	785.716292452506	18.452	0.079877	18.452	18.426	18.506	0	588	34	0.93076847747433	0.0222900711025618	0.93076847747433	562.470624186814	0	13.4700631893414						237	10	4	NaN	NaN	NaN	3.0329E-06	1	36075	77.325	74.419	1	51317			2598	488	2209	2255	2598	2598		
DGTTHQTSLELFMYLNEVAGK	21	Unmodified	_DGTTHQTSLELFMYLNEVAGK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.382614	2353.12601	1.0383	0.00081545	-1.557	-0.0012229	-0.51875	-0.00040742	785.715544916357	18.461	0.14194	18.461	18.417	18.559	0	462	85	1.01562323939346	0.0564447681024964	1.01562323939346	613.749017463683	0	34.1100120794416						601	17	6	NaN	NaN	NaN	2.7625E-08	1	36076	107.46	104.55	1	199800			2599	488	2209	2255	2599	2599		
DGTTHQTSLELFMYLNEVAGK	21	Oxidation (M)	_DGTTHQTSLELFM(Oxidation (M))YLNEVAGK_	DGTTHQTSLELFM(1)YLNEVAGK	DGTTHQTSLELFM(59)YLNEVAGK	0	1	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.714252	2369.12093	-0.084377	-6.6718E-05	0.62703	0.0004958	0.54265	0.00042908	791.04923253655	18	0.097565	18	17.974	18.071	0	588	28	0.93076847747433	0.0182373300269247	0.93076847747433	562.448336328456	0	11.0205235576424						261	12	4	NaN	NaN	NaN	1.549E-05	1	36206	59.171	57.548	1	47801			2600	488	2209	2256	2600	2600	77	
DGTVLCELINALYPEGQAPVK	21	Unmodified	_DGTVLCELINALYPEGQAPVK_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.08557	2286.15658	0.21889	0.00025043	1.0873	0.001244	1.3062	0.0014944	1144.58754729065	20.146	0.079814	20.146	20.093	20.173	0	63	58	1.28111162701928	0.0376048516734613	1.28111162701928	516.213872539525	0	15.1525797590311						292	10	3	NaN	NaN	NaN	1.5334E-37	1	35529	191.98	174.71	1	166820			2601	1001	2210	2257	2601	2601		
DGTYAVTYIPDK	12	Unmodified	_DGTYAVTYIPDK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.8299	1341.64525	1.5937	0.0010707	2.7783	0.0018666	4.3721	0.0029373	671.831599787436	9.6026	0.11527	9.6026	9.5583	9.6736	0	477	34	1.0055473068722	0.0221762449945386	1.0055473068722	406.896106024896	0	8.97364815445599						263	14	3	NaN	NaN	NaN	0.0013708	1	13659	90.142	76.869	1	163660			2602	326	2211	2258	2602	2602		
DGTYAVTYVPLTAGMYTLTMK	21	Unmodified	_DGTYAVTYVPLTAGMYTLTMK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.046174	2295.11669	0.18215	0.00013954	-0.11955	-9.1583E-05	0.062599	4.7954E-05	766.379735606793	19.188	0.070943	19.188	19.144	19.215	0	441	22	1.02971785871157	0.0140868363075159	1.02971785871157	622.35877138593	0	8.51404689438925						129	9	4	NaN	NaN	NaN	0.036174	1	35599	40.83	37.389	1	24745			2603	326	2212	2259	2603	2603		
DGVADVSIEDSVISLSGDHCIIGR	24	Unmodified	_DGVADVSIEDSVISLSGDHCIIGR_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.74287	2513.20678	1.9685	0.001651	-0.17719	-0.00014862	1.7913	0.0015024	839.076746726882	17.495	0.16847	17.495	17.433	17.601	0	330	40	1.10399226369747	0.0260388926708219	1.10399226369747	666.901701271331	0	15.72962274503						264	20	2	NaN	NaN	NaN	1.855E-09	1	36893	93.777	83.131	1	152440			2604	479	2213	2260	2604	2604		
DGVADVSIEDSVISLSGDHCIIGR	24	Unmodified	_DGVADVSIEDSVISLSGDHCIIGR_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.74287	2513.20678	1.8517	0.0015531	1.0306	0.00086437	2.8822	0.0024174	839.078524326094	16.856	0.48771	16.856	16.777	17.264	0	333	100	1.10198982404297	0.0661443471648167	1.10198982404297	665.69205937197	0	39.9566000695161						2448	56	7	NaN	NaN	NaN	1.4831E-18	1	36894	202.93	189.4	1	2464200			2605	479	2213	2260	2605	2605		
DGVCVLGLHLAK	12	Unmodified	_DGVCVLGLHLAK_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.352822	1280.69109	1.7543	0.0011251	-0.38702	-0.00024821	1.3673	0.00087693	641.352781518668	12.813	0.088663	12.813	12.777	12.866	0	459	25	1.01763759082241	0.0161136996889994	1.01763759082241	411.988239533395	0	6.52359428062761						186	11	3	NaN	NaN	NaN	0.003508	1	11787	78.816	72.95	1	51715			2606	1979	2214	2261	2606	2606		
DGVFLYFEDNAGVIVNNK	18	Unmodified	_DGVFLYFEDNAGVIVNNK_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.49945	2012.98436	0.21141	0.000213	2.1684	0.0021847	2.3798	0.0023977	1008.00227679327	18.169	0.24824	18.169	18.071	18.319	0	120	28	1.2434810169581	0.0178470139806191	1.2434810169581	501.461518365941	0	7.19720736140596						261	29	2	NaN	NaN	NaN	0.060988	1	31851	8.3676	6.7796	1	61355			2607	1400	2215	2262	2607	2607		
DGVGAVMDSMELER	14	Unmodified	_DGVGAVMDSMELER_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.839616	1507.66468	1.0738	0.00081057	1.3515	0.0010202	2.4253	0.0018307	754.840525826441	13.717	0.12412	13.717	13.646	13.77	0	432	28	1.035754240522	0.0181041477634616	1.035754240522	418.64847657672	0	7.31763731623562						268	15	4	NaN	NaN	NaN	0.008277	1	18715	52.837	50.536	1	62674			2608	2612	2216	2263	2608	2608		
DGVIEASINHEK	12	Unmodified	_DGVIEASINHEK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.330598	1310.64664	2.0322	0.0013338	-0.0030114	-1.9765E-06	2.0292	0.0013318	656.331083730986	5.5583	0.27489	5.5583	5.4697	5.7445	0	504	37	0.987393073566096	0.0242207100839708	0.987393073566096	399.646318865838	0	9.80330719803004						488	32	4	NaN	NaN	NaN	5.144E-05	1	12672	90.306	79.604	1	231520			2609	191	2217	2264	2609	2609		
DGVLEEQIER	10	Unmodified	_DGVLEEQIER_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.298767	1186.58298	0.75542	0.00044894	0.49885	0.00029647	1.2543	0.00074541	594.298918524439	8.2366	0.16858	8.2366	8.1922	8.3608	0	648	43	0.890187667287968	0.0284420373903148	0.890187667287968	360.695222554504	0	11.5244317388239						322	20	3	NaN	NaN	NaN	3.3718E-07	1	9055	120.33	72.175	1	107870			2610	1583	2218	2265	2610	2610		
DGVLTLANNVTPAK	14	Unmodified	_DGVLTLANNVTPAK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.890823	1411.76709	1.2087	0.00085441	0.3843	0.00027166	1.593	0.0011261	706.891131177389	11.687	0.15959	11.687	11.624	11.784	0	450	76	1.02367897599655	0.0503240595692491	1.02367897599655	414.023270186149	0	20.3533844109868						531	19	4	NaN	NaN	NaN	0.00024516	1	15821	75.474	51.353	1	235370			2611	869	2219	2266	2611	2611		
DGVMFQIDQATK	12	Unmodified	_DGVMFQIDQATK_			0	0	0	Q9UM22	Q9UM22	Q9UM22	EPDR1	Mammalian ependymin-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.829377	1351.6442	0.59765	0.00040451	0.85307	0.00057738	1.4507	0.00098189	677.332829693131	11.828	0.13301	11.828	11.74	11.873	0	528	55	0.971237000454584	0.0363461485221255	0.971237000454584	392.982755795737	0	14.7064100750906						238	16	3	NaN	NaN	NaN	0.049852	1	13927	29.317	26.215	1	43027			2612	3285	2220	2267	2612	2612		
DGVPEGAQLQGPVHR	15	Unmodified	_DGVPEGAQLQGPVHR_			0	0	0	P16989	P16989	P16989	YBX3	Y-box-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.399878	1558.7852	2.2809	0.00178	-2.2088	-0.0017237	0.072162	5.6315E-05	780.39831735583	6.3121	0.23946	6.3121	6.2411	6.4806	0	408	58	1.0518390438467	0.0381935145621466	1.0518390438467	425.023055982249	0	15.4330877645877						894	28	4	NaN	NaN	NaN	0.00016961	1	20320	86.243	80.747	1	364170			2613	733	2221	2268	2613	2613		
DGVWNLQNEVTK	12	Unmodified	_DGVWNLQNEVTK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.851698	1401.68884	0.94025	0.00065991	1.8937	0.0013291	2.8339	0.001989	701.853392167364	11.811	0.15075	11.811	11.749	11.899	0	483	37	1.00151498427745	0.0241972834927519	1.00151498427745	405.087369422608	0	9.78718648360882						418	18	4	NaN	NaN	NaN	0.0042589	1	15497	66.664	60.401	1	195200			2614	2064	2222	2269	2614	2614		
DGVYFLYEALHGPPK	15	Unmodified	_DGVYFLYEALHGPPK_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.290996	1704.85116	-0.51259	-0.00029181	-0.45774	-0.00026059	-0.97033	-0.0005524	569.290850397413	16.44	0.25714	16.44	16.271	16.528	0	669	97	0.875957769340875	0.0650826443685285	0.875957769340875	530.527215583259	0	39.4175556266964						973	30	4	NaN	NaN	NaN	0.015817	1	24629	46.068	41.541	1	251030			2615	911	2223	2270	2615	2615		
DGWGGYGSDK	10	Unmodified	_DGWGGYGSDK_			0	0	0	Q15424;Q14151	Q15424;Q14151	Q15424	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.217246	1040.41994	0.66757	0.00034795	0.99933	0.00052087	1.6669	0.00086881	521.217205660057	5.6647	0.19513	5.6647	5.6115	5.8066	0	729	28	0.835224628594324	0.0183541170899648	0.835224628594324	338.970605959428	0	7.4489017431232						302	23	3	NaN	NaN	NaN	0.0044552	1	5231	57.032	51.284	1	76623			2616	1846;1727	2224	2271	2616	2616		
DGWPAMCIHGDK	12	Unmodified	_DGWPAMCIHGDK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.800097	1385.58564	1.1668	0.00080952	3.2249	0.0022375	4.3917	0.003047	693.80275433492	8.8931	0.12425	8.8931	8.8221	8.9464	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.317604965025	0	8.15804158698393						233	15	3	NaN	NaN	NaN	0.010266	1	14994	27.378	22.549	1	54490			2617	2435	2225	2272	2617	2617		
DGWPAMGIHGDK	12	Unmodified	_DGWPAMGIHGDK_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.295504	1282.57646	1.6855	0.0010826	2.047	0.0013148	3.7325	0.0023974	642.296331807202	8.3342	0.18633	8.3342	8.2454	8.4318	0	537	46	0.965173861991602	0.030328287920973	0.965173861991602	390.742280813774	0	12.278144759292						420	22	4	NaN	NaN	NaN	0.047914	1	11833	30.349	28.549	1	136310			2618	743	2226	2273	2618	2618		
DGWQVEEADDWLR	13	Unmodified	_DGWQVEEADDWLR_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.860251	1617.70595	1.6638	0.0013475	3.0197	0.0024456	4.6835	0.003793	809.862332100005	15.81	0.10643	15.81	15.748	15.854	0	399	31	1.0578662689527	0.0200865957702232	1.0578662689527	427.321389049078	0	8.11391029066158						181	13	3	NaN	NaN	NaN	3.2912E-05	1	22121	84.999	62.101	1	52283			2619	545	2227	2274	2619	2619		
DGWSLWYSEYR	11	Unmodified	_DGWSLWYSEYR_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.325316	1460.63608	0.57565	0.00042099	0.71131	0.0005202	1.287	0.00094119	731.325065937182	15.925	0.19509	15.925	15.872	16.067	0	474	40	1.00756305028564	0.0262046696285547	1.00756305028564	407.372950429843	0	10.594943491226						633	23	5	NaN	NaN	NaN	1.1901E-05	1	17277	107.08	98.604	1	346840			2620	859	2228	2275	2620	2620		
DGYDYDGYR	9	Unmodified	_DGYDYDGYR_			0	0	0	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.219985	1122.42542	1.6654	0.00093631	0.38705	0.00021761	2.0524	0.0011539	562.220173241233	6.0195	0.20395	6.0195	5.9751	6.1791	-8.8818E-16	636	40	0.898312834727904	0.026401305375596	0.898312834727904	364.226483192428	0	10.7045722123689						471	24	4	NaN	NaN	NaN	5.8139E-05	1	7327	102.46	100.67	1	209540			2621	1572	2229	2276	2621	2621		
DGYNYTLSK	9	Unmodified	_DGYNYTLSK_			0	0	0	P31949	P31949	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.750921	1059.48729	1.3803	0.00073261	1.7391	0.00092303	3.1194	0.0016556	530.752039240212	6.1081	0.38133	6.1081	6.0017	6.3831	0	678	70	0.869855008346864	0.0467813693639737	0.869855008346864	352.942137737301	0	18.9814582328819						1059	44	4	NaN	NaN	NaN	0.0011871	1	5700	100.84	70.274	1	1384400			2622	935	2230	2277	2622	2622		
DHADSNIVIMLVGNK	15	Unmodified	_DHADSNIVIMLVGNK_			0	0	0	Q15907;P62491	Q15907	Q15907	RAB11B;RAB11A	Ras-related protein Rab-11B;Ras-related protein Rab-11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.615373	1624.82429	-0.4531	-0.00024586	-2.6895	-0.0014594	-3.1426	-0.0017052	542.613920478448	14.48	0.1596	14.48	14.427	14.586	0	729	28	0.835224628594324	0.0183541170899648	0.835224628594324	506.057662828947	0	11.1206509959703						352	19	4	NaN	NaN	NaN	1.8054E-06	1	22332	108.4	98.151	1	125370			2623	1875	2231	2278	2623	2623		
DHAISLSEPR	10	Unmodified	_DHAISLSEPR_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.78837	1123.56219	2.3342	0.0013136	1.2936	0.00072805	3.6278	0.0020417	562.789088787963	5.044	0.16846	5.044	5.0085	5.177	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.845286743146	0	9.03378067837161						232	20	3	NaN	NaN	NaN	3.98E-10	1	7361	174.92	139.98	1	63900			2624	3422	2232	2279	2624	2624		
DHASIQMNVAEVDK	14	Unmodified	_DHASIQMNVAEVDK_			0	0	0	P63220	P63220	P63220	RPS21	40S ribosomal protein S21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.583962	1555.73006	0.11903	6.1847E-05	0.64456	0.0003349	0.76359	0.00039675	519.584146606973	7.4826	0.17733	7.4826	7.4028	7.5801	0	735	76	0.831145085810763	0.0509907790120442	0.831145085810763	503.774663451545	0	30.9065925726634						779	21	4	NaN	NaN	NaN	0.00084796	1	20224	97.175	79.077	1	227280			2625	1433	2233	2280	2625	2625		
DHASIQMNVAEVDK	14	Unmodified	_DHASIQMNVAEVDK_			0	0	0	P63220	P63220	P63220	RPS21	40S ribosomal protein S21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.872305	1555.73006	2.3724	0.0018478	0.10106	7.8716E-05	2.4734	0.0019265	778.872647746675	7.4826	0.50552	7.4826	7.4028	7.9083	0	432	73	1.035754240522	0.0482610995013308	1.035754240522	418.530798566204	0	19.5014953583924						1374	58	6	NaN	NaN	NaN	1.7532E-12	1	20225	191.95	161.6	1	1055900			2626	1433	2233	2280	2626	2626		
DHCVLFLK	8	Unmodified	_DHCVLFLK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.27077	1030.52699	0.59609	0.00030775	2.1795	0.0011252	2.7756	0.001433	516.271778379293	8.831	0.12437	8.831	8.7778	8.9021	0	642	34	0.894250814548268	0.0223426636256	0.894250814548268	362.97149925734	0	9.06876458109025						228	15	3	NaN	NaN	NaN	0.036761	1	5010	46.835	40.073	1	45187			2627	1942	2234	2281	2627	2627		
DHDVMLFLK	9	Unmodified	_DHDVMLFLK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.289159	1116.56377	0.42125	0.0002356	0.81862	0.00045785	1.2399	0.00069344	559.289637988782	12.139	0.13303	12.139	12.077	12.21	0	585	37	0.932794566565362	0.0243147574808095	0.932794566565362	378.231399153206	0	9.85919630289038						317	16	3	NaN	NaN	NaN	1.6E-12	1	7177	146.27	123.88	1	76807			2628	2452	2235	2282	2628	2628		
DHENIVIAK	9	Unmodified	_DHENIVIAK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.782556	1037.55056	2.4112	0.0012533	-0.15359	-7.9834E-05	2.2576	0.0011735	519.782609921228	4.042	0.43452	4.042	3.9888	4.4233	0	654	58	0.886123392477847	0.0386079489287342	0.886123392477847	359.640539426345	0	15.6693567698833						885	50	4	NaN	NaN	NaN	1.0005E-12	1	5183	180.34	109.67	1	631770			2629	554	2236	2283	2629	2629		
DHFEEAMR	8	Unmodified	_DHFEEAMR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.721641	1033.42873	2.3565	0.00122	0.10839	5.6114E-05	2.4649	0.0012761	517.721632212665	3.7849	0.1064	3.7849	3.7494	3.8558	0	660	34	0.882057989648486	0.0223643734856528	0.882057989648486	358.009257171385	0	9.07724076269949						243	13	4	NaN	NaN	NaN	0.0059452	1	5077	90.308	79.606	1	107840			2630	1265	2237	2284	2630	2630		
DHGGALGPEEFK	12	Unmodified	_DHGGALGPEEFK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.798934	1255.58332	2.3193	0.0014584	0.66183	0.00041616	2.9812	0.0018745	628.79902017184	5.984	0.41687	5.984	5.8775	6.2944	0	567	70	0.944945209309785	0.0465291454574099	0.944945209309785	382.640501865814	0	18.8412358661676						924	48	4	NaN	NaN	NaN	8.0705E-05	1	11080	108.4	99.927	1	391590			2631	221	2238	2285	2631	2631		
DHHFDMINIK	10	Unmodified	_DHHFDMINIK_			0	0	0	Q9P032	Q9P032	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.873007	1268.59719	-1.6055	-0.00068053	-0.040698	-1.7251E-05	-1.6462	-0.00069778	423.873073278569	7.9704	0.12418	7.9704	7.9261	8.0502	0	798	28	0.788241307691771	0.0184129317501174	0.788241307691771	478.721116053124	0	11.1826913296874						235	15	4	NaN	NaN	NaN	0.025414	1	11460	42.075	39.196	1	80693			2632	3142	2239	2286	2632	2632		
DHIIDDALVR	10	Unmodified	_DHIIDDALVR_			0	0	0	Q05086	Q05086	Q05086	UBE3A	Ubiquitin-protein ligase E3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.811845	1165.60914	1.0648	0.00062165	-1.4879	-0.00086865	-0.42308	-0.000247	583.810395152149	8.2188	0.10646	8.2188	8.1656	8.2721	0	570	25	0.942920803299286	0.016196370719784	0.942920803299286	382.141179503166	0	6.56396612406093						116	13	3	NaN	NaN	NaN	0.0010127	1	8489	57.032	48.85	1	21361			2633	1549	2240	2287	2633	2633		
DHIMEIFSTYGK	12	Unmodified	_DHIMEIFSTYGK_			0	0	0	Q15287	Q15287	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.845027	1439.6755	2.6182	0.0018873	-0.43258	-0.00031182	2.1856	0.0015755	720.844690265894	12.901	0.20396	12.901	12.839	13.043	0	456	40	1.01965166402748	0.0261865738228477	1.01965166402748	412.316879605385	0	10.589073491574						648	24	5	NaN	NaN	NaN	1.7424E-05	1	16661	85.821	72.023	1	307810			2634	1829	2241	2288	2634	2634		
DHINLPGFSGQNPLR	15	Unmodified	_DHINLPGFSGQNPLR_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.621627	1663.84305	-0.91589	-0.00050889	-1.217	-0.00067618	-2.1329	-0.0011851	555.621090617489	12.556	0.18619	12.556	12.44	12.626	0	723	55	0.839303037468863	0.0367107961141576	0.839303037468863	508.42803683849	0	22.2384492440154						703	22	3	NaN	NaN	NaN	1.7719E-06	1	23453	136.06	122.88	1	168590			2635	480	2242	2289	2635	2635		
DHINLPGFSGQNPLR	15	Unmodified	_DHINLPGFSGQNPLR_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.928803	1663.84305	2.4486	0.0020395	-2.8196	-0.0023485	-0.37097	-0.000309	832.92730432823	12.529	0.23053	12.529	12.414	12.644	0	351	40	1.08996939197032	0.0260604263960942	1.08996939197032	440.185685788238	0	10.5245401839788						482	27	4	NaN	NaN	NaN	0.0019664	1	23454	65.408	57.832	1	124140			2636	480	2242	2289	2636	2636		
DHLLGVSDSGK	11	Unmodified	_DHLLGVSDSGK_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.288202	1126.56185	1.8572	0.001048	1.7525	0.00098892	3.6097	0.0020369	564.289193989922	4.7248	0.097537	4.7248	4.6805	4.778	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.725757363918	0	8.21738394382027						219	12	3	NaN	NaN	NaN	1.8484E-07	1	7434	151.22	128.84	1	84300			2637	3353	2243	2290	2637	2637		
DHLVPDPGCHYDQLIEINLSELK	23	Unmodified	_DHLVPDPGCHYDQLIEINLSELK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	677.086443	2704.31667	-0.067753	-4.5875E-05	-0.87805	-0.00059452	-0.94581	-0.00064039	677.337377619308	16.395	0.14188	16.395	16.36	16.502	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	772.204760598011	0	13.0257148412221						241	17	4	NaN	NaN	NaN	0.00056497	1	37616	33.5	32.074	1	54577			2638	2674	2244	2291	2638	2638		
DHLVPDPGCHYDQLIEINLSELK	23	Unmodified	_DHLVPDPGCHYDQLIEINLSELK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.446165	2704.31667	0.41549	0.00037495	0.39269	0.00035438	0.80818	0.00072934	902.780839757533	16.395	0.062077	16.395	16.369	16.431	0	438	28	1.03173026378327	0.0181116473716121	1.03173026378327	623.007285688225	0	10.9366650028797						201	8	4	NaN	NaN	NaN	0.00066463	1	37617	27.236	26.589	1	38776			2639	2674	2244	2291	2639	2639		
DHLVTAYNHLFETK	14	Unmodified	_DHLVTAYNHLFETK_			0	0	0	Q00688	Q00688	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.286133	1686.83657	0.55951	0.00031517	-1.6326	-0.00091962	-1.0731	-0.00060446	563.285029912849	9.8864	0.14186	9.8864	9.842	9.9839	0	675	43	0.871889544407995	0.0284854887682705	0.871889544407995	528.108705385292	0	17.2538307084449						381	17	4	NaN	NaN	NaN	5.1999E-05	1	24099	98.167	92.139	1	134800			2640	1506	2245	2292	2640	2640		
DHLVTAYNHLFETK	14	Unmodified	_DHLVTAYNHLFETK_			0	0	0	Q00688	Q00688	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.425562	1686.83657	2.4548	0.0020729	-0.61059	-0.00051559	1.8442	0.0015573	844.424882817345	9.8776	0.097525	9.8776	9.842	9.9396	0	276	31	1.13998907770044	0.0199762230522604	1.13998907770044	460.334364229027	0	8.06651758191316						252	12	4	NaN	NaN	NaN	5.9026E-12	1	24101	146.58	130.29	1	64856			2641	1506	2245	2292	2641	2641		
DHMVTMHDVLDAQWLYDNHK	20	Unmodified	_DHMVTMHDVLDAQWLYDNHK_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.375576	2467.1049	1.5066	0.0012405	1.0363	0.00085325	2.5429	0.0020937	823.710313530743	14.214	0.070947	14.214	14.178	14.249	0	408	22	1.0518390438467	0.0140654662382922	1.0518390438467	635.462165774969	0	8.4975659448163						148	9	3	NaN	NaN	NaN	6.6466E-11	1	36662	112.68	108.83	1	43824			2642	287	2246	2293	2642	2642		
DHPALNYNIVSGPPSHK	17	Unmodified	_DHPALNYNIVSGPPSHK_			0	0	0	O15269	O15269	O15269	SPTLC1	Serine palmitoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.465749	1844.91695	1.8173	0.0016782	-2.1174	-0.0019554	-0.30013	-0.00027716	923.46295054913	7.6068	0.133	7.6068	7.5003	7.6334	0	231	37	1.16991841121525	0.0239220824983335	1.16991841121525	472.090017383102	0	9.65313156389016						167	16	3	NaN	NaN	NaN	0.0017312	1	28356	31.722	30.134	1	27985			2643	159	2247	2294	2643	2643		
DHPALNYNIVSGPPSHK	17	Unmodified	_DHPALNYNIVSGPPSHK_			0	0	0	O15269	O15269	O15269	SPTLC1	Serine palmitoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.979592	1844.91695	0.44005	0.00027106	1.3694	0.00084349	1.8094	0.0011146	616.314833570861	7.6068	0.13298	7.6068	7.5447	7.6777	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	548.649094265171	0	12.2848458028266						273	16	4	NaN	NaN	NaN	0.00040041	1	28357	83.474	67.187	1	69336			2644	159	2247	2294	2644	2644		
DHPAVAATLNNLAVLYGK	18	Unmodified	_DHPAVAATLNNLAVLYGK_			0	0	0	Q07866;Q9H0B6	Q07866;Q9H0B6	Q07866	KLC1;KLC2	Kinesin light chain 1;Kinesin light chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.007259	1865.99995	-0.75634	-0.0004712	-1.2718	-0.00079233	-2.0281	-0.0012635	623.340201675619	15.225	0.044337	15.225	15.198	15.242	0	696	34	0.857641857947968	0.0224078882408908	0.857641857947968	519.072615425024	0	13.5619793362004						135	6	3	NaN	NaN	NaN	0.0017376	1	28853	51.569	49.727	1	22278			2645	1571;2842	2248	2295	2645	2645		
DHPESYHSFMWNNFFK	16	Unmodified	_DHPESYHSFMWNNFFK_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.968587	2084.88393	-0.014377	-1.0006E-05	-0.97324	-0.00067734	-0.98762	-0.00068735	696.302211942524	14.604	0.097539	14.604	14.568	14.666	0	648	64	0.890187667287968	0.0426719476596595	0.890187667287968	538.353199716744	0	25.8064455450287						576	12	4	NaN	NaN	NaN	9.5815E-05	1	33094	55.754	52.466	1	124090			2646	1092	2249	2296	2646	2646		
DHPHTAAYLQELGR	14	Unmodified	_DHPHTAAYLQELGR_			0	0	0	Q6GMV3	Q6GMV3	Q6GMV3	PTRHD1	Putative peptidyl-tRNA hydrolase PTRHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.399878	1606.7852	2.0698	0.0016649	-4.1718	-0.0033558	-2.102	-0.0016908	804.396140262445	7.0037	0.15083	7.0037	6.9417	7.0925	0	396	49	1.05987478976334	0.03213855919461	1.05987478976334	428.157454168732	0	12.9830087651088						304	18	3	NaN	NaN	NaN	0.0036809	1	21813	48.701	44.455	1	59131			2647	2033	2250	2297	2647	2647		
DHPHTAAYLQELGR	14	Unmodified	_DHPHTAAYLQELGR_			0	0	0	Q6GMV3	Q6GMV3	Q6GMV3	PTRHD1	Putative peptidyl-tRNA hydrolase PTRHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.602344	1606.7852	-1.267	-0.00067986	1.2561	0.00067402	-0.010885	-5.8409E-06	536.603172690995	6.9949	0.12421	6.9949	6.9505	7.0747	0	786	34	0.796423123669906	0.0224921689856458	0.796423123669906	482.593781878593	0	13.6291634067798						271	15	4	NaN	NaN	NaN	6.428E-08	1	21815	156.14	146.4	1	102260			2648	2033	2250	2297	2648	2648		
DHPLPEVAHVK	11	Unmodified	_DHPLPEVAHVK_			0	0	0	P13073	P13073	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.559417	1240.65642	0.01657	6.8694E-06	0.63633	0.0002638	0.6529	0.00027067	414.559793656569	4.5031	0.40795	4.5031	4.3879	4.7958	0	819	70	0.773912161060781	0.0471405699554962	0.773912161060781	470.132409840472	0	28.6367250309822						1365	47	5	NaN	NaN	NaN	0.0012487	1	10640	95.311	81.316	1	859620			2649	675	2251	2298	2649	2649		
DHPLPEVAHVK	11	Unmodified	_DHPLPEVAHVK_			0	0	0	P13073	P13073	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.335487	1240.65642	2.8186	0.0017513	-0.89639	-0.00055696	1.9222	0.0011944	621.335190641494	4.5031	0.27487	4.5031	4.4145	4.6893	0	540	64	0.963152256458504	0.0424831283312966	0.963152256458504	390.064199697334	0	17.2051171993494						914	32	4	NaN	NaN	NaN	5.1764E-05	1	10642	117.3	90.843	1	339120			2650	675	2251	2298	2650	2650		
DHPYISEIK	9	Unmodified	_DHPYISEIK_			0	0	0	Q9NRG4	Q9NRG4	Q9NRG4	SMYD2	N-lysine methyltransferase SMYD2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.282389	1100.55022	1.4588	0.00080422	3.819	0.0021054	5.2778	0.0029096	551.284958996788	5.6115	0.1242	5.6115	5.576	5.7002	0	594	49	0.926715457081489	0.0324466467014676	0.926715457081489	375.833079458467	0	13.1588645195558						184	15	2	NaN	NaN	NaN	0.015749	1	6733	65.156	43.881	1	38409			2651	3019	2252	2299	2651	2651		
DHQPCIIFMDEIDAIGGR	18	Unmodified	_DHQPCIIFMDEIDAIGGR_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.327675	2085.9612	-0.20585	-0.00014334	-0.61236	-0.0004264	-0.81821	-0.00056974	696.661379852083	17.761	0.13301	17.761	17.699	17.832	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	535.893443123901	0	14.7516007734297						417	16	4	NaN	NaN	NaN	2.6252E-05	1	33114	58.794	54.487	1	104080			2652	1390	2253	2300	2652	2652		
DHQTITIQEMPEK	13	Unmodified	_DHQTITIQEMPEK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.382505	1568.75046	2.1029	0.0016516	-2.1123	-0.001659	-0.009425	-7.4022E-06	785.380876638357	7.0037	0.24831	7.0037	6.8974	7.1457	0	429	37	1.03776581230406	0.0241405316442127	1.03776581230406	419.312944673019	0	9.75406714086392						554	29	5	NaN	NaN	NaN	1.6984E-07	1	20621	121.69	105.81	1	167330			2653	835	2254	2301	2653	2653		
DHQYQFLEDAVR	12	Unmodified	_DHQYQFLEDAVR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.575795	1519.70556	-1.5554	-0.00078946	2.2629	0.0011486	0.70754	0.00035913	507.578232766751	10.764	0.20393	10.764	10.631	10.835	0	789	55	0.794378096728713	0.036792574000763	0.794378096728713	481.589944849139	0	22.3054157168389						313	24	4	NaN	NaN	NaN	0.0027217	1	19121	70.389	57.115	1	75060			2654	1648	2255	2302	2654	2654		
DHQYQFLEDAVR	12	Unmodified	_DHQYQFLEDAVR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.860054	1519.70556	2.0904	0.0015905	0.54753	0.0004166	2.6379	0.0020071	760.860747975461	10.773	0.16849	10.773	10.711	10.879	0	438	52	1.03173026378327	0.0342061750020484	1.03173026378327	416.991943120027	0	13.8250276079951						526	20	4	NaN	NaN	NaN	2.0755E-05	1	19122	117.21	94.155	1	148570			2655	1648	2255	2302	2655	2655		
DHRDNLEFFLAGIGR	15	Unmodified	_DHRDNLEFFLAGIGR_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.300665	1758.88017	-1.2786	-0.00075095	-0.35937	-0.00021106	-1.638	-0.00096201	587.300389411098	15.234	0.088663	15.234	15.198	15.287	0	741	34	0.827064408645228	0.0224452877647342	0.827064408645228	500.79080307596	0	13.5907113974166						210	11	4	NaN	NaN	NaN	0.0038688	1	26111	37.504	32.41	1	47092			2656	1127	2256	2303	2656	2656		
DHSFFIPDIEYLSDIK	16	Unmodified	_DHSFFIPDIEYLSDIK_			0	0	0	Q969S3	Q969S3	Q969S3	ZNF622	Zinc finger protein 622	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.987641	1937.94109	-0.33295	-0.00021541	-0.38514	-0.00024918	-0.71809	-0.00046459	647.321655086166	18.851	0.06204	18.851	18.834	18.896	0	600	22	0.922661313351899	0.0141924536519389	0.922661313351899	558.271648271739	0	8.58738128350069						118	8	4	NaN	NaN	NaN	0.0010722	1	30466	69.641	52.881	1	26459			2657	2462	2257	2304	2657	2657		
DHSGGIGDICK	11	Unmodified	_DHSGGIGDICK_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.764037	1157.51352	1.5198	0.00088114	1.6394	0.00095045	3.1592	0.0018316	579.76489819095	4.0243	0.21283	4.0243	3.9268	4.1396	0	648	34	0.890187667287968	0.0223550653870297	0.890187667287968	360.799309693365	0	9.06066490941521						304	25	3	NaN	NaN	NaN	2.2682E-07	1	8261	121.8	109.73	1	61269			2658	1951	2258	2305	2658	2658		
DHSHTPWIVIIAK	13	Unmodified	_DHSHTPWIVIIAK_			0	0	0	Q13564	Q13564	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.280542	1515.8198	-1.8544	-0.00093884	-3.1538	-0.0015967	-5.0082	-0.0025355	506.278898338371	11.598	0.17739	11.598	11.527	11.704	0	771	49	0.806643990516186	0.0326817653854051	0.806643990516186	489.037439711974	0	19.8137059932951						411	21	3	NaN	NaN	NaN	0.0027539	1	19014	40.386	37.508	1	99864			2659	1685	2259	2306	2659	2659		
DHTLEDEDVIQIVK	14	Unmodified	_DHTLEDEDVIQIVK_			0	0	0	Q9Y295	Q9Y295	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.949187	1652.82573	-1.664	-0.00091842	2.4778	0.0013676	0.81386	0.00044921	551.951398878369	11.89	0.088691	11.89	11.846	11.935	0	717	19	0.84338031290707	0.0122301271639466	0.84338031290707	510.92602052073	0	7.40910133507731						136	11	3	NaN	NaN	NaN	0.046751	1	23136	34.193	33.043	1	25880			2660	3339	2260	2307	2660	2660		
DHTLVQTIAR	10	Unmodified	_DHTLVQTIAR_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.319837	1152.62512	1.2183	0.00070334	1.2919	0.00074583	2.5102	0.0014492	577.320539836706	6.2146	0.2217	6.2146	6.1702	6.3919	0	585	37	0.932794566565362	0.0243080216588687	0.932794566565362	378.087065013646	0	9.85270379428806						393	26	4	NaN	NaN	NaN	1.4366E-14	1	8142	162.59	137.74	1	109560			2661	1765	2261	2308	2661	2661		
DHTQVVSLK	9	Unmodified	_DHTQVVSLK_			0	0	0	Q96EX1	Q96EX1	Q96EX1	SMIM12	Small integral membrane protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.782556	1025.55056	1.9217	0.00098734	0.14174	7.2822E-05	2.0634	0.0010602	513.782838387384	3.9977	0.097536	3.9977	3.9711	4.0686	0	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	365.467838369969	0	6.59360001693324						150	12	3	NaN	NaN	NaN	0.0013073	1	4877	78.816	53.562	1	28506			2662	2519	2262	2309	2662	2662		
DHTTLLSEVMTPR	13	Unmodified	_DHTTLLSEVMTPR_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.379765	1498.74498	1.1108	0.00083355	2.2964	0.0017232	3.4073	0.0025568	750.381906820277	12.467	0.19505	12.467	12.369	12.564	0	390	31	1.06389100039157	0.0200782861239661	1.06389100039157	430.044539176308	0	8.11601686681541						349	23	3	NaN	NaN	NaN	2.0596E-07	1	18495	122.51	104.41	1	65868			2663	786	2263	2310	2663	2663		
DHVFLCEGEEPK	12	Unmodified	_DHVFLCEGEEPK_			0	0	0	Q9H910	Q9H910	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.329741	1458.64493	2.0923	0.0015281	-0.37685	-0.00027523	1.7154	0.0012528	730.329445399426	6.4096	0.2128	6.4096	6.3653	6.5781	0	435	64	1.03374239103424	0.0422780386363306	1.03374239103424	417.96301088158	0	17.0938683330278						631	25	4	NaN	NaN	NaN	2.4953E-05	1	17222	108.4	95.127	1	199260			2664	2929	2264	2311	2664	2664		
DHVVSDFSEHGSLK	14	Unmodified	_DHVVSDFSEHGSLK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.582838	1555.72669	0.24594	0.00012779	1.4135	0.00073445	1.6595	0.00086223	519.583541195776	5.3189	0.19511	5.3189	5.2745	5.4697	0	726	34	0.837263974740672	0.0224328108600214	0.837263974740672	507.483458044086	0	13.5970025850193						465	23	4	NaN	NaN	NaN	4.931E-06	1	20222	124.06	111.48	1	247940			2665	1259	2265	2312	2665	2665		
DHVVSDFSEHGSLK	14	Unmodified	_DHVVSDFSEHGSLK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.870619	1555.72669	2.089	0.0016271	0.23238	0.000181	2.3214	0.0018081	778.871074544988	5.3189	0.15957	5.3189	5.2835	5.443	0	393	37	1.0618830335572	0.0241005916389636	1.0618830335572	429.089010317464	0	9.73864228698147						357	19	4	NaN	NaN	NaN	8.1339E-17	1	20223	150.44	146.46	1	112350			2666	1259	2265	2312	2666	2666		
DHVYLQLHHLPPEQLATR	18	Unmodified	_DHVYLQLHHLPPEQLATR_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.05175	2166.13342	1.0694	0.00077321	-0.3143	-0.00022726	0.75507	0.00054596	723.385587802298	8.9642	0.21285	8.9642	8.9109	9.1238	0	576	19	0.938871150116794	0.0121506427444233	0.938871150116794	567.654397939109	0	7.3464455594368						239	25	3	NaN	NaN	NaN	0.0018016	1	34261	19.637	19.514	1	41795			2667	919	2266	2313	2667	2667		
DHYEATAMHR	10	Unmodified	_DHYEATAMHR_			0	0	0	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.848861	1229.52475	-0.086357	-3.548E-05	0.9685	0.00039791	0.88215	0.00036243	410.849291113577	2.3572	0.079794	2.3572	2.3217	2.4015	0	867	16	0.741107305531458	0.0102622379494217	0.741107305531458	450.249054982117	0	6.23467466079722						79	10	3	NaN	NaN	NaN	0.0058932	1	10283	79.059	68.357	1	14441			2668	365	2267	2314	2668	2668		
DIAFEVEDCDYIVQK	15	Unmodified	_DIAFEVEDCDYIVQK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.424567	1842.83458	2.0716	0.0019109	1.6586	0.0015299	3.7302	0.0034409	922.927067970583	14.249	0.17733	14.249	14.214	14.391	0	252	28	1.15595906938629	0.0179551284989976	1.15595906938629	466.461009696371	0	7.24538401979675						356	21	4	NaN	NaN	NaN	0.0044769	1	28298	51.454	50.304	1	71295			2669	939	2268	2315	2669	2669		
DIAGSGDGTQEVSK	14	Unmodified	_DIAGSGDGTQEVSK_			0	0	0	Q9NWH9	Q9NWH9	Q9NWH9	SLTM	SAFB-like transcription modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.320428	1362.6263	2.5147	0.0017158	-2.5371	-0.0017311	-0.022445	-1.5315E-05	682.318383007478	3.7228	0.11526	3.7228	3.6962	3.8115	0	552	28	0.955063035883597	0.0182095678399629	0.955063035883597	386.406917489068	0	7.36737022948267						215	14	3	NaN	NaN	NaN	1.181E-07	1	14272	88.734	69.478	1	57490			2670	3080	2269	2316	2670	2670		
DIALVQQLFEALCK	14	Unmodified	_DIALVQQLFEALCK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.442366	1646.87018	1.1225	0.00092542	-0.90714	-0.00074789	0.21534	0.00017753	824.441966025752	20.182	0.053202	20.182	20.155	20.208	0	360	25	1.08395544855938	0.0160382885112604	1.08395544855938	437.794198656094	0	6.47763676628432						69	7	4	NaN	NaN	NaN	0.046989	1	22952	12.018	10.966	1	15842			2671	2013	2270	2317	2671	2671		
DIAPPPEECLQLLSR	15	Unmodified	_DIAPPPEECLQLLSR_			0	0	0	Q99567	Q99567	Q99567	NUP88	Nuclear pore complex protein Nup88	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.445637	1736.87672	1.7691	0.0015381	-1.6485	-0.0014333	0.12064	0.00010489	869.945504646846	14.666	0.23941	14.666	14.462	14.701	0	288	49	1.13199748998575	0.0319839576220251	1.13199748998575	456.99998879452	0	12.9122797569576						293	28	3	NaN	NaN	NaN	0.06902	1	25520	33.751	19.388	1	63474			2672	2650	2271	2318	2672	2672		
DIAQQLQATCTSLGSSIQGLPTNVK	25	Unmodified	_DIAQQLQATCTSLGSSIQGLPTNVK_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	877.45332	2629.33813	1.7627	0.0015467	-1.638	-0.0014373	0.12467	0.00010939	877.787846731014	17.424	0.17735	17.424	17.353	17.53	0	315	121	1.11400032671325	0.0801805389323038	1.11400032671325	672.783934255984	0	48.4238443563097						1079	21	4	NaN	NaN	NaN	4.2132E-07	1	37356	61.319	58.869	1	246230			2673	272	2272	2319	2673	2673		
DICACAATGTGK	12	Unmodified	_DICACAATGTGK_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.771005	1223.52746	2.1032	0.0012888	-0.24261	-0.00014867	1.8606	0.0011401	612.77107302387	4.0154	0.14188	4.0154	3.98	4.1219	0	612	37	0.914549654013882	0.0243349817538098	0.914549654013882	370.437829948809	0	9.85687085787066						214	17	3	NaN	NaN	NaN	0.069547	1	10106	22.004	14.357	1	38408			2674	2546	2273	2320	2674	2674		
DICNDVLSLLEK	12	Unmodified	_DICNDVLSLLEK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.863417	1417.71228	1.4803	0.0010508	-0.057977	-4.1156E-05	1.4224	0.0010097	709.863538672249	19.454	0.23054	19.454	19.41	19.641	0	483	67	1.00151498427745	0.0443617044097231	1.00151498427745	405.042646804513	0	17.9412015326332						1158	27	6	NaN	NaN	NaN	3.8938E-05	1	16014	124.46	106.99	1	2039300			2675	1427	2274	2321	2675	2675		
DIDAFWLQR	9	Unmodified	_DIDAFWLQR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.29583	1162.57711	0.2236	0.0001302	-0.55766	-0.00032472	-0.33405	-0.00019452	582.295528074313	15.792	0.23055	15.792	15.712	15.943	0	630	64	0.902373728295776	0.0426305360144882	0.902373728295776	365.7196586545	0	17.2775698035024						1019	27	4	NaN	NaN	NaN	8.1178E-06	1	8409	121.31	102.91	1	500550			2676	350	2275	2322	2676	2676		
DIDDDLEGEVTEECGK	16	Unmodified	_DIDDDLEGEVTEECGK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.378011	1822.74147	2.4154	0.0022038	-1.1092	-0.001012	1.3062	0.0011918	912.377243732854	11.163	0.16848	11.163	11.119	11.287	0	336	58	1.09998710857178	0.0380516101948882	1.09998710857178	443.911358594303	0	15.3561272188413						678	20	5	NaN	NaN	NaN	9.8663E-14	1	27780	163.93	152.45	1	192830			2677	3225	2276	2323	2677	2677		
DIDENAYAK	9	Unmodified	_DIDENAYAK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.740554	1037.46655	1.7376	0.00090311	1.4146	0.0007352	3.1522	0.0016383	519.740908353834	4.2371	0.19509	4.2371	4.2017	4.3968	0	657	37	0.884090832094921	0.0243924210858615	0.884090832094921	358.815980974155	0	9.89987700643684						331	23	3	NaN	NaN	NaN	0.026055	1	5172	36.211	22.563	1	112630			2678	1642	2277	2324	2678	2678		
DIDEVSSLLR	10	Unmodified	_DIDEVSSLLR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.803685	1145.59282	0.81969	0.00047034	-1.2874	-0.00073874	-0.46776	-0.0002684	573.802996797357	13.903	0.26602	13.903	13.832	14.099	0	657	121	0.884090832094921	0.0811729906495914	0.884090832094921	358.372130557364	0	32.9040145500387						1001	31	3	NaN	NaN	NaN	4.7799E-10	1	7946	171.75	146.9	1	1025200			2679	1174	2278	2325	2679	2679		
DIDIHEVR	8	Unmodified	_DIDIHEVR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	332.841813	995.503609	-2.4619	-0.00081942	0.49073	0.00016334	-1.9711	-0.00065608	332.84181972585	5.4873	0.053178	5.4873	5.4608	5.5139	0	888	16	0.726732155490709	0.0102722617102058	0.726732155490709	442.663927475151	0	6.25699534324576						48	7	2	NaN	NaN	NaN	0.059145	1	4176	27.705	14.877	1	9705.1			2680	1509	2279	2326	2680	2680		
DIDNLVQR	8	Unmodified	_DIDNLVQR_			0	0	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.759081	971.503609	0.91445	0.00044512	-0.89169	-0.00043404	0.022759	1.1078E-05	486.758380422115	7.66	0.14193	7.66	7.6068	7.7487	0	711	34	0.847456455381371	0.0224141150004975	0.847456455381371	344.253260892286	0	9.10504856023965						257	17	3	NaN	NaN	NaN	0.0013025	1	3663	89.123	67.195	1	96782			2681	1125	2280	2327	2681	2681		
DIDPQNDLTFLR	12	Unmodified	_DIDPQNDLTFLR_			0	0	0	Q9NP97;Q8TF09	Q9NP97	Q9NP97	DYNLRB1;DYNLRB2	Dynein light chain roadblock-type 1;Dynein light chain roadblock-type 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.864805	1445.71506	0.95524	0.00069146	0.32397	0.00023451	1.2792	0.00092598	723.864987393281	14.897	0.20396	14.897	14.834	15.038	0	468	52	1.01159370163332	0.0342581813626666	1.01159370163332	409.042212111184	0	13.8524412171267						794	24	4	NaN	NaN	NaN	1.3489E-05	1	16855	79.311	54.057	1	361950			2682	2982	2281	2328	2682	2682		
DIEDTLSGIQTAGCGSTFFR	20	Unmodified	_DIEDTLSGIQTAGCGSTFFR_			0	0	0	Q8IYU8	Q8IYU8	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.00478	2173.995	0.0011996	1.3051E-06	4.7269	0.0051429	4.7281	0.0051442	1088.51119875341	17.051	0.14188	17.051	16.998	17.14	0	141	43	1.2295923935727	0.0277943958750091	1.2295923935727	495.609002666063	0	11.2030237754594						301	17	4	NaN	NaN	NaN	1.2709E-07	1	34361	110.9	104.52	1	57228			2683	2229	2282	2329	2683	2683		
DIEEIIDELK	10	Unmodified	_DIEEIIDELK_			0	0	0	P19404	P19404	P19404	NDUFV2	NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.819001	1215.62345	0.32244	0.00019631	-1.3124	-0.000799	-0.98994	-0.0006027	608.818353373673	18.408	0.15967	18.408	18.355	18.515	0	594	61	0.926715457081489	0.0405189944749071	0.926715457081489	375.392810769299	0	16.413386772876						540	19	4	NaN	NaN	NaN	6.7171E-06	1	9894	98.009	72.755	1	204280			2684	768	2283	2330	2684	2684		
DIELHLESSSHQETLDHIQK	20	Unmodified	_DIELHLESSSHQETLDHIQK_			0	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	590.543568	2358.14517	0.35132	0.00020747	1.2705	0.0007503	1.6218	0.00095777	590.795288521983	8.5648	0.088657	8.5648	8.5382	8.6268	0	666	31	0.877991458330206	0.0203354810451108	0.877991458330206	707.425468250306	0	16.384939812276						222	11	4	NaN	NaN	NaN	1.2838E-05	1	36114	78.888	68.129	1	61626			2685	1960	2284	2331	2685	2685		
DIELVMSQANVSR	13	Unmodified	_DIELVMSQANVSR_			0	0	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.37194	1460.72933	0.99178	0.00072536	1.0953	0.00080109	2.0871	0.0015265	731.373121314079	11.864	0.26604	11.864	11.82	12.086	0	420	97	1.04379886199097	0.0643748185222626	1.04379886199097	422.023381766884	0	26.0276951840841						1210	31	3	NaN	NaN	NaN	7.6856E-08	1	17296	150.21	32.22	1	389540			2686	46	2285	2332	2686	2686		
DIELVMSQANVSR	13	Oxidation (M)	_DIELVM(Oxidation (M))SQANVSR_	DIELVM(1)SQANVSR	DIELVM(120)SQANVSR	0	1	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.369398	1476.72424	1.6202	0.0011979	-0.61198	-0.00045248	1.0082	0.00074544	739.369426085475	8.6268	0.23064	8.6268	8.5293	8.7599	0	474	76	1.00756305028564	0.0503310094148808	1.00756305028564	407.331308305347	0	20.3475066969557						507	27	3	NaN	NaN	NaN	3.511E-07	1	17793	121.96	96.108	1	119440			2687	46	2285	2333	2687	2687	20	
DIEREDIEFICK	12	Unmodified	_DIEREDIEFICK_			0	0	1	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.920463	1565.73956	-1.1395	-0.00059587	-0.64849	-0.00033911	-1.788	-0.00093497	522.920149002041	10.525	0.23058	10.525	10.48	10.711	0	798	73	0.788241307691771	0.0490567802946507	0.788241307691771	477.742869317967	0	29.732680524061						530	27	5	NaN	NaN	NaN	0.00023459	1	20520	96.957	75.868	1	227590			2688	1175	2286	2334	2688	2688		
DIEREDIEFICK	12	Unmodified	_DIEREDIEFICK_			0	0	1	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.877056	1565.73956	2.1856	0.0017133	-1.0969	-0.00085984	1.0887	0.00085343	783.876383905704	10.525	0.21282	10.525	10.445	10.658	0	402	40	1.05585747106793	0.026117980429907	1.05585747106793	426.630117605804	0	10.5532397769248						408	25	3	NaN	NaN	NaN	0.00059849	1	20523	62.705	46.053	1	193260			2689	1175	2286	2334	2689	2689		
DIFLFITR	8	Unmodified	_DIFLFITR_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.794935	1023.57532	-1.2183	-0.00062476	-0.40678	-0.00020859	-1.6251	-0.00083335	512.794661772333	17.929	0.097522	17.929	17.894	17.991	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	351.448886681363	0	6.60934196876678						162	12	3	NaN	NaN	NaN	0.0034028	1	4839	82.716	68.722	1	37082			2690	1921	2287	2335	2690	2690		
DIFMFITR	8	Unmodified	_DIFMFITR_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.773145	1041.53174	-0.78674	-0.0004105	-0.1884	-9.8301E-05	-0.97514	-0.0005088	521.773230706532	17.539	0.097542	17.539	17.495	17.592	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	350.542445450095	0	6.60874745969915						146	12	3	NaN	NaN	NaN	0.012201	1	5258	49.325	34.79	1	30759			2691	3041	2288	2336	2691	2691		
DIFPDLFK	8	Unmodified	_DIFPDLFK_			0	0	0	Q96MG7	Q96MG7	Q96MG7	NDNL2	Melanoma-associated antigen G1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.765843	993.517133	-1.8749	-0.00093327	1.0737	0.00053445	-0.80121	-0.00039882	497.766386987389	17.903	0.070911	17.903	17.876	17.947	0	720	25	0.841341816837976	0.0163068367696065	0.841341816837976	341.663659204805	0	6.62210460630433						102	9	2	NaN	NaN	NaN	0.013237	1	4138	51.43	38.603	1	23156			2692	2585	2289	2337	2692	2692		
DIFQEIFDK	9	Unmodified	_DIFQEIFDK_			0	0	0	P48735	P48735	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.790047	1153.56554	-0.47462	-0.00027423	-0.16087	-9.2952E-05	-0.63549	-0.00036718	577.789940283835	18.319	0.10641	18.319	18.275	18.381	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	369.043731903357	0	9.04721677292508						204	13	3	NaN	NaN	NaN	0.0017759	1	8156	58.426	42.844	1	60199			2693	1117	2290	2338	2693	2693		
DIFSEVGPVVSFR	13	Unmodified	_DIFSEVGPVVSFR_			0	0	0	P33240	P33240	P33240	CSTF2	Cleavage stimulation factor subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.380091	1450.74563	0.91889	0.00066746	-2.3319	-0.0016938	-1.413	-0.0010264	726.378818125632	17.752	0.1862	17.752	17.672	17.858	0	489	55	0.997481546940468	0.0363109867512514	0.997481546940468	403.322656220177	0	14.6820196036813						649	22	4	NaN	NaN	NaN	1.271E-05	1	17008	108.4	92.522	1	220440			2694	945	2291	2339	2694	2694		
DIGEGNLSTAAAAALAAAAVK	21	Unmodified	_DIGEGNLSTAAAAALAAAAVK_			0	0	0	Q8TAQ2	Q8TAQ2	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.004904	1883.99526	1.1778	0.0011107	-1.4365	-0.0013546	-0.25865	-0.00024391	943.505598121339	17.894	0.12411	17.894	17.849	17.974	0	249	37	1.15795408347545	0.0239352372746984	1.15795408347545	467.189790467462	0	9.65694464636556						306	15	4	NaN	NaN	NaN	4.5117E-16	1	29247	127.62	122.53	1	67632			2695	2333	2292	2340	2695	2695		
DIGEGNLSTAAAAALAAAAVK	21	Unmodified	_DIGEGNLSTAAAAALAAAAVK_			0	0	0	Q8TAQ2	Q8TAQ2	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.005695	1883.99526	-0.1146	-7.2085E-05	0.59384	0.00037353	0.47924	0.00030145	629.00576337206	17.885	0.09751	17.885	17.858	17.956	0	555	19	0.953040030838688	0.0121388709649835	0.953040030838688	576.770054337523	0	7.34632023789015						103	12	3	NaN	NaN	NaN	0.03871	1	29248	36.181	34.34	1	24210			2696	2333	2292	2340	2696	2696		
DIHDDQDYLHSLGK	14	Unmodified	_DIHDDQDYLHSLGK_			0	0	0	O75955	O75955	O75955	FLOT1	Flotillin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.593514	1654.75871	-0.53385	-0.000295	-0.3252	-0.0001797	-0.85905	-0.0004747	552.59323217369	8.1213	0.13295	8.1213	8.077	8.21	0	738	28	0.829104889055312	0.018364325465562	0.829104889055312	502.273003402926	0	11.125136311241						268	16	4	NaN	NaN	NaN	0.00012339	1	23177	75.5	68.753	1	82545			2697	373	2293	2341	2697	2697		
DIHEELPK	8	Unmodified	_DIHEELPK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.756007	979.497461	1.4071	0.00069054	1.0231	0.00050208	2.4302	0.0011926	490.756365051806	4.7514	0.2217	4.7514	4.6627	4.8844	0	639	37	0.896281965493857	0.0243721251806781	0.896281965493857	364.045648426966	0	9.89930229161126						290	26	2	NaN	NaN	NaN	0.0065297	1	3835	62.88	35.176	1	67495			2698	2769	2294	2342	2698	2698		
DIHFMPCSGLTGANLK	16	Unmodified	_DIHFMPCSGLTGANLK_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.62013	1759.83856	-0.28608	-0.00016811	-0.58443	-0.00034342	-0.87051	-0.00051153	587.619766161804	12.405	0.097533	12.405	12.343	12.44	0	708	85	0.849494101904619	0.0569868398075958	0.849494101904619	514.369884537004	0	34.5056123947672						379	12	4	NaN	NaN	NaN	0.0010602	1	26139	52.863	0	1	121720			2699	709	2295	2343	2699	2699		
DIHLDLPSNNNLVSK	15	Unmodified	_DIHLDLPSNNNLVSK_			0	0	0	P18583	P18583	P18583	SON	Protein SON	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.296809	1677.8686	-1.3125	-0.00073541	-0.9238	-0.0005176	-2.2363	-0.001253	560.296189771165	11.837	0.079825	11.837	11.793	11.873	0	732	43	0.833184998970724	0.0285687183645899	0.833184998970724	504.687081104422	0	17.3049960094466						209	10	3	NaN	NaN	NaN	0.053421	1	23860	24.689	21.604	1	40372			2700	754	2296	2344	2700	2700		
DIHTLAQLISAYSLVDPEK	19	Unmodified	_DIHTLAQLISAYSLVDPEK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.06242	2112.11029	0.58602	0.00061946	-3.2121	-0.0033954	-2.6261	-0.0027759	1057.56161780668	19.924	0.053196	19.924	19.907	19.96	0	114	43	1.24744674793813	0.0277601231172213	1.24744674793813	502.899068187506	0	11.1912913889879						140	7	4	NaN	NaN	NaN	0.0082112	1	33488	44.16	40.908	1	34810			2701	383	2297	2345	2701	2701		
DIHTLAQLISAYSLVDPEK	19	Unmodified	_DIHTLAQLISAYSLVDPEK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.044038	2112.11029	0.12856	9.0638E-05	0.27656	0.00019499	0.40512	0.00028563	705.378261665198	19.924	0.026619	19.924	19.915	19.942	0	543	22	0.961130371139249	0.0141531980479981	0.961130371139249	581.207237182579	0	8.55861117469874						77	4	4	NaN	NaN	NaN	0.0095079	1	33489	46.206	44.732	1	24859			2702	383	2297	2345	2702	2702		
DIHTLAQLISAYSLVDPEK	19	Unmodified	_DIHTLAQLISAYSLVDPEK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.044038	2112.11029	0.10325	7.2796E-05	2.0847	0.0014698	2.1879	0.0015426	705.379605262384	19.933	0.026619	19.933	19.915	19.942	0	498	22	0.991429299781895	0.0141258159516562	0.991429299781895	599.529361137368	0	8.54205278672259						62	4	4	NaN	NaN	NaN	0.0011955	1	33490	34.33	34.207	1	14839			2703	383	2297	2345	2703	2703		
DIIALNPLYR	10	Unmodified	_DIIALNPLYR_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.342781	1186.67101	0.41893	0.00024899	-0.84958	-0.00050494	-0.43065	-0.00025595	594.342254477747	15.065	0.079796	15.065	15.03	15.109	1.7764E-15	579	46	0.936845902828289	0.0303913445314729	0.936845902828289	379.600359546199	0	12.3142613704252						236	10	3	NaN	NaN	NaN	9.2004E-05	1	9073	77.072	57.816	1	80337			2704	990	2298	2346	2704	2704		
DIIDTPMDFATVR	13	Unmodified	_DIIDTPMDFATVR_			0	0	0	Q8WWQ0	Q8WWQ0	Q8WWQ0	PHIP	PH-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.368866	1492.72318	0.54027	0.00040378	-1.5623	-0.0011676	-1.022	-0.00076381	747.368334392864	16.014	0.17734	16.014	15.934	16.111	0	453	43	1.02166545906632	0.0281911902363581	1.02166545906632	412.991447286943	0	11.3958246832531						412	21	4	NaN	NaN	NaN	2.7609E-07	1	18321	81.799	55.942	1	91581			2705	2392	2299	2347	2705	2705		
DIIEHLNTSGAPADTSDPLQQICK	24	Unmodified	_DIIEHLNTSGAPADTSDPLQQICK_			0	0	0	P37198	P37198	P37198	NUP62	Nuclear pore glycoprotein p62	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.093792	2622.25955	1.286	0.0011253	0.064676	5.6598E-05	1.3506	0.0011819	875.428158633309	13.292	0.15963	13.292	13.247	13.407	0	507	76	0.985374541851584	0.0504703092110241	0.985374541851584	595.110746543537	0	30.4812252774637						689	19	4	NaN	NaN	NaN	1.0996E-06	1	37325	82.747	79.351	1	130260			2706	998	2300	2348	2706	2706		
DIIHDPGR	8	Unmodified	_DIIHDPGR_			0	0	0	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.740691	921.466829	1.6269	0.00075122	1.4919	0.00068887	3.1188	0.0014401	461.741348232645	3.9534	0.46996	3.9534	3.8824	4.3524	0	705	67	0.851531465363931	0.0448438238456479	0.851531465363931	346.17061402556	0	18.230229495122						1367	54	4	NaN	NaN	NaN	0.0059098	1	2730	87.251	62.4	1	858210			2707	1416	2301	2349	2707	2707		
DIIHFFR	7	Unmodified	_DIIHFFR_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.25852	946.502486	-0.19182	-9.097E-05	-1.7646	-0.00083687	-1.9564	-0.00092784	474.257643855498	12.822	0.15963	12.822	12.768	12.928	0	729	37	0.835224628594324	0.024467056718703	0.835224628594324	339.409505705539	0	9.94265655329212						293	19	3	NaN	NaN	NaN	0.058859	1	3179	51.456	28.147	1	88888			2708	1157	2302	2350	2708	2708		
DIILFSFK	8	Unmodified	_DIILFSFK_			0	0	0	Q709C8	Q709C8	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.784036	981.553519	-1.8965	-0.00093268	0.27984	0.00013762	-1.6167	-0.00079506	491.784142845407	17.397	0.062071	17.397	17.371	17.433	0	729	16	0.835224628594324	0.0101967310272127	0.835224628594324	339.2359630454	0	4.14151804377832						52	8	2	NaN	NaN	NaN	0.050075	1	3878	34.931	29.184	1	8809.8			2709	2101	2303	2351	2709	2709		
DIILQSNPLLEAFGNAK	17	Unmodified	_DIILQSNPLLEAFGNAK_			0	0	0	Q12965;O00160	Q12965	Q12965	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.001633	1841.98871	1.536	0.0014162	-0.060115	-5.5426E-05	1.4759	0.0013608	922.502762767115	19.419	0.10644	19.419	19.357	19.463	0	225	46	1.17390432875292	0.029896443173731	1.17390432875292	473.704042422967	0	12.0640716952715						354	13	4	NaN	NaN	NaN	5.4528E-10	1	28289	100.69	89.721	1	107480			2710	1611	2304	2352	2710	2710		
DIINEEEVQFLK	12	Unmodified	_DIINEEEVQFLK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.882664	1475.75077	1.5121	0.0011173	0.93074	0.00068771	2.4428	0.001805	738.883487487175	15.171	0.24828	15.171	15.092	15.34	0	420	52	1.04379886199097	0.0341872929561484	1.04379886199097	421.983074346057	0	13.8211100917349						871	29	5	NaN	NaN	NaN	4.0973E-31	1	17771	263.75	198.35	1	524630			2711	1136	2305	2353	2711	2711		
DIINMLFYHDR	11	Unmodified	_DIINMLFYHDR_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.571216	1435.69182	-3.1547	-0.0015129	0.4448	0.00021331	-2.7099	-0.0012996	479.571429887255	16.777	0.12411	16.777	16.732	16.856	0	780	25	0.800512323802183	0.0163545256042036	0.800512323802183	485.56471766364	0	9.920122865579						244	15	4	NaN	NaN	NaN	0.0075304	1	16557	44.57	40.962	1	70167			2712	545	2306	2354	2712	2712		
DIINMLFYHDR	11	Unmodified	_DIINMLFYHDR_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.853187	1435.69182	0.21976	0.00015797	0.93319	0.00067083	1.1529	0.0008288	719.355526358748	16.777	0.20395	16.777	16.714	16.918	0	471	37	1.00957851518677	0.0241839121258494	1.00957851518677	408.254372145118	0	9.77951463153397						373	24	4	NaN	NaN	NaN	2.4499E-07	1	16558	96.946	75.671	1	106220			2713	545	2306	2354	2713	2713		
DIISDTSGDFR	11	Unmodified	_DIISDTSGDFR_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.288399	1224.56225	0.8171	0.00050112	-1.3109	-0.00080396	-0.4938	-0.00030284	613.28708870964	10.622	0.33694	10.622	10.551	10.888	0	621	175	0.908462957275599	0.117929885221301	0.908462957275599	367.968952501068	0	47.7669848681446						1178	39	4	NaN	NaN	NaN	0.00073112	1	10133	99.855	87.788	1	365060			2714	558	2307	2355	2714	2714		
DIISDTSGDFRK	12	Unmodified	_DIISDTSGDFRK_			0	0	1	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.893013	1352.65721	-1.0391	-0.00046954	-0.0545	-2.4628E-05	-1.0936	-0.00049417	451.892813562745	8.3253	0.13306	8.3253	8.2898	8.4229	0	810	25	0.78005493425781	0.0163773081327158	0.78005493425781	473.432605948204	0	9.93975081391613						191	16	3	NaN	NaN	NaN	0.012639	1	13958	32.549	27.398	1	50388			2715	558	2308	2356	2715	2715		
DIISDTSGDFRK	12	Unmodified	_DIISDTSGDFRK_			0	0	1	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.335881	1352.65721	2.0017	0.0013558	3.329	0.0022549	5.3307	0.0036107	677.337868084314	8.3342	0.26613	8.3342	8.2011	8.4672	0	501	55	0.98941132619024	0.0363310729406037	0.98941132619024	400.333422324713	0	14.7001983725463						962	31	5	NaN	NaN	NaN	7.2316E-11	1	13963	183.13	141.05	1	920830			2716	558	2308	2356	2716	2716		
DIISELLTSDDMK	13	Unmodified	_DIISELLTSDDMK_			0	0	0	Q9NYY8	Q9NYY8	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.365989	1478.71743	-0.11964	-8.8576E-05	1.2613	0.00093381	1.1416	0.00084523	740.36672687012	19.206	0.070945	19.206	19.179	19.25	0	444	46	1.02770517576159	0.0301985912511542	1.02770517576159	415.469035086426	0	12.208345218062						238	9	3	NaN	NaN	NaN	1.8023E-05	1	17854	65.879	42.043	1	51473			2717	3123	2309	2357	2717	2717		
DIISIAEDEDLR	12	Unmodified	_DIISIAEDEDLR_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.848821	1387.68309	1.142	0.00079355	2.3098	0.001605	3.4518	0.0023985	694.849254261012	14.178	0.20395	14.178	14.045	14.249	0	477	88	1.0055473068722	0.0584889418299939	1.0055473068722	406.758439072262	0	23.6596234897781						1099	24	5	NaN	NaN	NaN	0.0018256	1	15072	56.202	24.062	1	282490			2718	673	2310	2358	2718	2718		
DIISIAEDEDLRVHFEESSK	20	Unmodified	_DIISIAEDEDLRVHFEESSK_			0	0	1	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.048288	2331.12303	1.2915	0.0010048	1.7503	0.0013619	3.0418	0.0023667	778.383516343899	14.365	0.22165	14.365	14.32	14.542	0	480	25	1.00353128488872	0.0161270627425241	1.00353128488872	606.475327413133	0	9.74624887560833						374	26	4	NaN	NaN	NaN	3.288E-07	1	35906	95.345	84.587	1	92144			2719	673	2311	2359	2719	2719		
DIIVEFIK	8	Unmodified	_DIIVEFIK_			0	0	0	Q8NAV1	Q8NAV1	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.789318	975.564084	-1.0482	-0.00051234	-3.8525	-0.0018831	-4.9007	-0.0023954	488.78749915499	15.189	0.062075	15.189	15.136	15.198	0	720	31	0.841341816837976	0.0203863795531677	0.841341816837976	341.749536381838	0	8.28086233367492						83	8	2	NaN	NaN	NaN	0.028342	1	3752	42.835	36.604	1	22826			2720	2280	2312	2360	2720	2720		
DILADLIPK	9	Unmodified	_DILADLIPK_			0	0	0	O75390	O75390	O75390	CS	Citrate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.30005	996.585547	-0.4429	-0.00022114	-0.44948	-0.00022443	-0.89239	-0.00044557	499.300006968816	17.548	0.5675	17.548	17.238	17.805	0	696	64	0.857641857947968	0.0427371451207755	0.857641857947968	348.268366280296	0	17.3545584007625						2171	65	4	NaN	NaN	NaN	0.0014552	1	4222	69.716	46.14	1	1644800			2721	329	2313	2361	2721	2721		
DILADVNHPFVVK	13	Unmodified	_DILADVNHPFVVK_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.903734	1465.79291	1.2015	0.00088179	0.20522	0.00015061	1.4067	0.0010324	733.904881998587	13.221	0.097544	13.221	13.167	13.265	0	387	49	1.06589869032374	0.0321296946517993	1.06589869032374	430.944705330622	0	12.9900917599187						403	12	4	NaN	NaN	NaN	0.00024527	1	17462	86.243	41.673	1	115010			2722	1845	2314	2362	2722	2722		
DILAVLTMK	9	Unmodified	_DILAVLTMK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.296453	1002.57835	-1.5267	-0.00076683	-0.70686	-0.00035506	-2.2335	-0.0011219	502.296129496688	17.291	0.14191	17.291	17.246	17.388	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	347.413107095374	0	8.26971335550536						299	17	4	NaN	NaN	NaN	0.0025252	1	4361	65.156	41.581	1	98667			2723	1585	2315	2363	2723	2723		
DILCGAADEVLAVLK	15	Unmodified	_DILCGAADEVLAVLK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.926548	1585.83854	1.1194	0.00088874	1.3805	0.0010961	2.5	0.0019848	793.927688611819	20.066	0.044346	20.066	20.057	20.102	0	249	34	1.15795408347545	0.0219481752144277	1.15795408347545	467.831311712193	0	8.86740134758759						120	6	4	NaN	NaN	NaN	0.00011492	1	21151	57.003	50.256	1	81261			2724	350	2316	2364	2724	2724		
DILEDVVTSAIK	12	Unmodified	_DILEDVVTSAIK_			0	0	0	Q9Y6D5	Q9Y6D5	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.8612	1301.70785	-0.062658	-4.0845E-05	-0.72339	-0.00047155	-0.78605	-0.00051239	651.860660884964	18.213	0.10642	18.213	18.16	18.266	0	510	73	0.983355730988811	0.0485017850891378	0.983355730988811	398.040721019303	0	19.6324533423839						366	13	3	NaN	NaN	NaN	0.00068247	1	12406	47.334	26.059	1	70570			2725	3459	2317	2365	2725	2725		
DILELGGPEGDAASGTISK	19	Unmodified	_DILELGGPEGDAASGTISK_			0	0	0	Q9NPF5	Q9NPF5	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.459995	1828.90544	2.6554	0.0024309	-3.3019	-0.0030227	-0.64644	-0.00059179	915.457063608043	12.839	0.20396	12.839	12.689	12.893	0	255	61	1.15396378101328	0.039924995069111	1.15396378101328	465.682367183641	0	16.1117415637198						457	24	4	NaN	NaN	NaN	6.4739E-05	1	27939	42.495	37.107	1	98805			2726	2989	2318	2366	2726	2726		
DILELQDDR	9	Unmodified	_DILELQDDR_			0	0	0		REV__P07910	REV__P07910			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.78021	1115.54587	1.0872	0.00060749	1.878	0.0010494	2.9652	0.0016569	558.779744058619	7.4294	0.33692	7.4294	7.2255	7.5624	0	624	64	0.906433495720521	0.0426187151879737	0.906433495720521	367.546544323751	0	17.281313593124						765	39	5	NaN	NaN	NaN	0.0066274	1	7141	69.905	28.88	1	185940	+		2727	3486	2319	2367	2727	2727		
DILETHLR	8	Unmodified	_DILETHLR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.777274	995.539994	0.35726	0.00017819	0.51835	0.00025854	0.87561	0.00043673	498.777491891359	7.1014	0.31926	7.1014	7.0126	7.3319	-8.8818E-16	669	40	0.875957769340875	0.0264379622091019	0.875957769340875	355.711112827471	0	10.7359935460891						620	37	4	NaN	NaN	NaN	1.83E-05	1	4184	138.55	93.782	1	331770			2728	1465	2320	2368	2728	2728		
DILFPYIEENVK	12	Unmodified	_DILFPYIEENVK_			0	0	0	Q9UHY7	Q9UHY7	Q9UHY7	ENOPH1	Enolase-phosphatase E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.390125	1478.7657	0.28874	0.00021378	0.16611	0.00012298	0.45485	0.00033676	740.390033453659	17.016	0.21285	17.016	16.883	17.096	0	378	130	1.07192009927972	0.0864739016189171	1.07192009927972	433.343617987187	0	34.9586815418328						1237	25	4	NaN	NaN	NaN	0.003972	1	17871	39.293	30.819	1	288980			2729	3227	2321	2369	2729	2729		
DILIQYDR	8	Unmodified	_DILIQYDR_			0	0	0	P62249	P62249	P62249	RPS16	40S ribosomal protein S16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.277106	1034.53966	1.0165	0.00052684	0.22121	0.00011465	1.2377	0.00064149	518.277221901862	9.6736	0.23942	9.6736	9.6115	9.8509	0	666	70	0.877991458330206	0.0468008560973249	0.877991458330206	356.353704551101	0	18.9952399743875						882	28	4	NaN	NaN	NaN	0.00063442	1	5109	93.561	37.547	1	462420			2730	1372	2322	2370	2730	2730		
DILKPEIMEEIVMETR	16	Unmodified	_DILKPEIMEEIVMETR_			0	0	1	Q13868	Q13868	Q13868	EXOSC2	Exosome complex component RRP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.337288	1944.99004	-0.097921	-6.3584E-05	-0.54684	-0.00035508	-0.64476	-0.00041867	649.671652971776	17.991	0.079797	17.991	17.965	18.045	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	566.839680191583	0	9.80370509840361						156	10	4	NaN	NaN	NaN	0.033886	1	30624	35.246	26.493	1	27095			2731	1707	2323	2371	2731	2731		
DILLRPELEELR	12	Unmodified	_DILLRPELEELR_			0	0	1	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.287474	1494.84059	-1.4263	-0.00071212	-0.97415	-0.00048638	-2.4004	-0.0011985	499.287047661178	13.797	0.079769	13.797	13.753	13.832	0	750	25	0.820941264895493	0.0163295196874556	0.820941264895493	497.768438535228	0	9.90121932522152						110	10	3	NaN	NaN	NaN	0.038629	1	18397	22.004	21.714	1	21176			2732	474	2324	2372	2732	2732		
DILPCLDGYLK	11	Unmodified	_DILPCLDGYLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.839213	1305.66387	0.088755	5.8032E-05	-1.29	-0.00084342	-1.2012	-0.00078539	653.838464744017	16.972	0.27492	16.972	16.856	17.131	0	564	76	0.946969335010767	0.0505541668543408	0.946969335010767	383.300115851055	0	20.4625612420724						1615	32	4	NaN	NaN	NaN	0.0057291	1	12526	40.386	26.391	1	707780			2733	1465	2325	2373	2733	2733		
DILQDVHDK	9	Unmodified	_DILQDVHDK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.77747	1081.54039	1.2848	0.00069608	1.0209	0.0005531	2.3057	0.0012492	541.778077567953	6.1702	0.17738	6.1702	6.117	6.2944	0	645	61	0.892219381832517	0.0406089550100428	0.892219381832517	361.921712233113	0	16.4727003565487						478	21	4	NaN	NaN	NaN	0.0015345	1	6241	65.404	48.947	1	146910			2734	2422	2326	2374	2734	2734		
DILQNVFK	8	Unmodified	_DILQNVFK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.776742	975.538931	-0.37281	-0.00018222	-1.7571	-0.00085884	-2.1299	-0.0010411	488.776063380344	14.232	0.23054	14.232	14.178	14.409	0	714	55	0.845418525735192	0.0366852964336388	0.845418525735192	343.405591578376	0	14.9014192858696						431	27	4	NaN	NaN	NaN	0.016056	1	3750	65.313	29.679	1	140330			2735	1076	2327	2375	2735	2735		
DILVEVNHPFIVK	13	Unmodified	_DILVEVNHPFIVK_			0	0	0	P51812;Q9UK32	P51812	P51812	RPS6KA3;RPS6KA6	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.935034	1521.85551	1.9572	0.0014913	1.3238	0.0010086	3.281	0.0024999	761.935760598669	13.487	0.079807	13.487	13.451	13.531	0	357	37	1.08596037261705	0.0240607506716419	1.08596037261705	438.904396114684	0	9.72445174786043						235	10	4	NaN	NaN	NaN	0.00032045	1	19188	77.358	64.763	1	52313			2736	1200	2328	2376	2736	2736		
DILVLPLDLTDTGSHEAATK	20	Unmodified	_DILVLPLDLTDTGSHEAATK_			0	0	0	Q9Y394	Q9Y394	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.05733	2108.10011	-0.019058	-2.0108E-05	-0.39207	-0.00041366	-0.41113	-0.00043377	1055.55826739127	16.777	0.070947	16.777	16.741	16.812	0	90	58	1.26329880838669	0.0376254562668012	1.26329880838669	509.296030074641	0	15.1686167826759						280	9	3	NaN	NaN	NaN	2.4323E-05	1	33447	46.823	42.516	1	54680			2737	3373	2329	2377	2737	2737		
DILVLPLDLTDTGSHEAATK	20	Unmodified	_DILVLPLDLTDTGSHEAATK_			0	0	0	Q9Y394	Q9Y394	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.707315	2108.10011	-0.31666	-0.00022283	0.41207	0.00028997	0.095411	6.7141E-05	704.042053378697	16.777	0.079797	16.777	16.741	16.821	0	501	34	0.98941132619024	0.0222007820488888	0.98941132619024	598.316502227948	0	13.4252498537318						264	10	4	NaN	NaN	NaN	0.0009282	1	33448	36.059	33.344	1	64099			2738	3373	2329	2377	2738	2738		
DILYVFQGIDGK	12	Unmodified	_DILYVFQGIDGK_			0	0	0	Q96CW5	Q96CW5	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.36391	1366.71327	-0.11961	-8.1858E-05	0.51731	0.00035403	0.3977	0.00027217	684.364139864267	17.335	0.12413	17.335	17.291	17.415	0	489	31	0.997481546940468	0.0201699767195437	0.997481546940468	403.556800107948	0	8.16028255174996						200	15	3	NaN	NaN	NaN	0.029228	1	14401	44.598	30.142	1	43987			2739	2500	2330	2378	2739	2739		
DIMTPLVALLK	11	Unmodified	_DIMTPLVALLK_			0	0	0	Q7Z4Q2	Q7Z4Q2	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.364867	1212.71518	-0.11722	-7.1193E-05	-1.1721	-0.00071192	-1.2894	-0.00078311	607.364235583072	20.004	0.035482	20.004	19.986	20.022	0	531	25	0.969216233931596	0.0161694889209075	0.969216233931596	392.619544368926	0	6.55009393213817						76	5	3	NaN	NaN	NaN	0.0019018	1	9816	46.447	26.213	1	19366			2740	2139	2331	2379	2740	2740		
DINAVAASLR	10	Unmodified	_DINAVAASLR_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.288005	1028.56146	-0.030531	-1.5732E-05	1.8158	0.00093566	1.7853	0.00091992	515.288918077266	10.268	0.053187	10.268	10.241	10.294	0	636	34	0.898312834727904	0.0223426636256	0.898312834727904	364.629436812673	0	9.06899304980442						79	7	2	NaN	NaN	NaN	0.040351	1	4959	34.953	19.371	1	12115			2741	2112	2332	2380	2741	2741		
DINAVLIDMER	11	Unmodified	_DINAVLIDMER_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.83192	1287.64929	1.3667	0.00088126	0.16961	0.00010937	1.5363	0.00099063	644.831558687173	15.571	0.12415	15.571	15.491	15.615	0	486	73	0.999498404980629	0.0484481440475263	0.999498404980629	404.621298478257	0	19.6129887308341						464	15	3	NaN	NaN	NaN	5.6561E-05	1	11992	123.42	89.994	1	115520			2742	1273	2333	2381	2742	2742		
DINAYNCEEPTEK	13	Unmodified	_DINAYNCEEPTEK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.838127	1581.6617	2.8433	0.0022514	-1.4361	-0.0011371	1.4072	0.0011143	791.838127533558	5.4962	0.46997	5.4962	5.4342	5.9041	0	441	175	1.02971785871157	0.116824782479912	1.02971785871157	416.031419909655	0	47.2000943992257						3456	54	6	NaN	NaN	NaN	9.3478E-17	1	21011	201.66	190.87	1	2902900			2743	893	2334	2382	2743	2743		
DINAYNCEEPTEK	13	Unmodified	_DINAYNCEEPTEK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.838127	1581.6617	1.8105	0.0014336	1.7826	0.0014115	3.5931	0.0028451	791.839838083624	5.3632	0.070936	5.3632	5.3366	5.4076	0	429	22	1.03776581230406	0.0140810032793992	1.03776581230406	419.282979990214	0	5.68907256939838						71	9	2	NaN	NaN	NaN	0.0072017	1	21012	24.744	22.76	1	14383			2744	893	2334	2382	2744	2744		
DINLQDEDWNEFNDINK	17	Unmodified	_DINLQDEDWNEFNDINK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.47162	2120.92869	1.2035	0.0012774	2.153	0.0022854	3.3565	0.0035628	1061.97442612503	15.171	0.079831	15.171	15.127	15.207	0	168	52	1.21171599086077	0.0337943541860266	1.21171599086077	488.481188674085	0	13.6235771647583						308	10	3	NaN	NaN	NaN	1.2106E-07	1	33628	110.14	107.59	1	203420			2745	2064	2335	2383	2745	2745		
DINQEVYNFLATAGAK	16	Unmodified	_DINQEVYNFLATAGAK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.441409	1752.86826	1.1263	0.00098826	-0.17795	-0.00015614	0.94835	0.00083212	877.441202759793	19.144	0.13299	19.144	19.1	19.233	0	315	40	1.11400032671325	0.0260138037074695	1.11400032671325	449.701839350762	0	10.5013033616193						363	16	5	NaN	NaN	NaN	1.0288E-08	1	25974	126.32	107.51	1	103350			2746	2674	2336	2384	2746	2746		
DINTDFLLVVLR	12	Unmodified	_DINTDFLLVVLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.406109	1416.79767	0.82622	0.00058612	-1.8729	-0.0013286	-1.0466	-0.00074249	709.405260901009	20.093	0.017725	20.093	20.084	20.102	0	417	16	1.04580932352505	0.0100509208656256	1.04580932352505	422.959249149027	0	4.0649187638262						36	3	3	NaN	NaN	NaN	0.0063732	1	15994	40.386	26.391	1	12042			2747	1575	2337	2385	2747	2747		
DINWDSSQWQPLIQDR	16	Unmodified	_DINWDSSQWQPLIQDR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.97668	1999.9388	1.2526	0.0012538	1.614	0.0016156	2.8666	0.0028694	1001.47921701348	16.546	0.17735	16.546	16.502	16.679	0	204	52	1.18784641916898	0.0338500722771573	1.18784641916898	479.047025297909	0	13.6514082703014						598	21	4	NaN	NaN	NaN	1.0491E-09	1	31636	115.79	113.08	1	146060			2748	2442	2338	2386	2748	2748		
DIPFSAIYFPVYAHCK	16	Unmodified	_DIPFSAIYFPVYAHCK_			0	0	0	O75746	O75746	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.474197	1926.93384	0.64896	0.0006259	1.5067	0.0014532	2.1557	0.0020791	964.977529360567	16.51	0.088643	16.51	16.484	16.573	0	138	34	1.23157729878518	0.0218309668124257	1.23157729878518	496.81295673084	0	8.80651761044356						171	11	3	NaN	NaN	NaN	0.051179	1	30211	34.193	0	1	26447			2749	356	2339	2387	2749	2749		
DIPGLTDTTVPR	12	Unmodified	_DIPGLTDTTVPR_			0	0	0	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.843342	1283.67213	1.7783	0.0011432	0.31461	0.00020225	2.0929	0.0013454	642.843705168858	11.128	0.26601	11.128	11.03	11.296	0	537	103	0.965173861991602	0.0686634003732067	0.965173861991602	390.738734665422	0	27.7975308244366						1349	31	4	NaN	NaN	NaN	2.1062E-05	1	11875	83.438	63.255	1	726960			2750	1396	2340	2388	2750	2750		
DIPGQASLVFDVALLDLHNPK	21	Unmodified	_DIPGQASLVFDVALLDLHNPK_			0	0	0	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.742471	2261.20558	0.73209	0.00055254	-0.14286	-0.00010782	0.58923	0.00044472	755.076842228344	19.747	0.044322	19.747	19.729	19.774	0	465	31	1.01360860968299	0.0201504747888646	1.01360860968299	612.67762864612	0	12.1799923479301						142	6	4	NaN	NaN	NaN	0.00054085	1	35292	32.692	28.842	1	30679			2751	420	2341	2389	2751	2751		
DIPMPLVSSGVEHGNLR	17	Unmodified	_DIPMPLVSSGVEHGNLR_			0	0	0	Q9H9T3	Q9H9T3	Q9H9T3	ELP3	Elongator complex protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.96981	1819.92507	1.2952	0.0011799	-0.11599	-0.00010567	1.1792	0.0010743	910.969698530674	12.635	0.14187	12.635	12.556	12.697	0	177	28	1.2057522832638	0.0178935796740805	1.2057522832638	486.599689209291	0	7.22122647338523						295	17	3	NaN	NaN	NaN	0.00011933	1	27722	66.485	61.098	1	66183			2752	2939	2342	2390	2752	2752		
DIPVTIHNLEEYLR	14	Unmodified	_DIPVTIHNLEEYLR_			0	0	0	Q14669	Q14669	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.305305	1710.89408	-2.0433	-0.0011673	1.6213	0.00092627	-0.42194	-0.00024106	571.305810259453	17.309	0.070921	17.309	17.282	17.353	0	726	16	0.837263974740672	0.0101953139363458	0.837263974740672	507.077733889628	0	6.17465559620769						71	9	2	NaN	NaN	NaN	0.002594	1	24791	42.061	37.815	1	16234			2753	1761	2343	2391	2753	2753		
DIPVTIMDVFDQSALSTEAK	20	Unmodified	_DIPVTIMDVFDQSALSTEAK_			0	0	0	Q9NZD8	Q9NZD8	Q9NZD8	SPG21	Maspardin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.5432	2179.07185	0.12197	0.00013302	1.2197	0.0013302	1.3417	0.0014632	1090.54559882275	20.013	0.044326	20.013	19.995	20.04	0	114	46	1.24744674793813	0.0297409520132894	1.24744674793813	502.798089984915	0	11.9874406593559						145	6	4	NaN	NaN	NaN	0.00022481	1	34440	66.509	62.659	1	30720			2754	3131	2344	2392	2754	2754		
DIQEDSGMEPR	11	Unmodified	_DIQEDSGMEPR_			0	0	0	O75844	O75844	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.777341	1275.54013	2.0957	0.0013387	0.58457	0.00037341	2.6803	0.0017121	638.777772010566	5.1593	0.14185	5.1593	5.1149	5.2568	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.116199693529	0	9.8387446271484						392	17	4	NaN	NaN	NaN	0.029522	1	11636	40.533	23.881	1	97162			2755	366	2345	2393	2755	2755		
DIQEESTFSSR	11	Unmodified	_DIQEESTFSSR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.796588	1297.57862	1.7353	0.0011276	1.1603	0.00075396	2.8956	0.0018815	649.797438792679	5.8775	0.2572	5.8775	5.8155	6.0727	0	570	67	0.942920803299286	0.0445153797577822	0.942920803299286	381.686300637375	0	18.0194461313872						741	30	5	NaN	NaN	NaN	4.4562E-05	1	12278	103.87	90.599	1	349260			2756	1055	2346	2394	2756	2756		
DIQHWESLKPEER	13	Unmodified	_DIQHWESLKPEER_			0	0	1	P31350	P31350	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.277638	1665.81108	0.32857	0.00018278	-0.15505	-8.6251E-05	0.17352	9.6528E-05	556.611955045253	7.6245	0.1508	7.6245	7.5624	7.7132	0	684	34	0.86578508874114	0.0223923326891349	0.86578508874114	524.465061449256	0	13.5645627217664						416	18	4	NaN	NaN	NaN	0.00019675	1	23510	119.43	112.68	1	120150			2757	923	2347	2395	2757	2757		
DIQNMNFLLK	10	Unmodified	_DIQNMNFLLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.326273	1234.63799	0.55716	0.00034451	0.65245	0.00040343	1.2096	0.00074793	618.326754419842	15.003	0.1596	15.003	14.923	15.083	0	561	58	0.948993180460448	0.03846905778735	0.948993180460448	384.350567603174	0	15.5803060550482						395	19	4	NaN	NaN	NaN	0.00087177	1	10465	60.892	38.506	1	99844			2758	2167	2348	2396	2758	2758		
DIQNTQCLLNVEHLSAGCPHVTLQFADSK	29	Unmodified	_DIQNTQCLLNVEHLSAGCPHVTLQFADSK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	824.651313	3294.57614	1.2907	0.0010644	-0.40322	-0.00033252	0.88747	0.00073185	825.152307349572	14.914	0.18622	14.914	14.861	15.047	0	477	46	1.0055473068722	0.0302403378372377	1.0055473068722	808.852279555775	0	24.3250278003035						873	22	7	NaN	NaN	NaN	6.1496E-10	1	38540	70.337	67.967	1	280800			2759	2108	2349	2397	2759	2759		
DIQQTLTQNMER	12	Unmodified	_DIQQTLTQNMER_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.859197	1475.70384	1.5234	0.0011256	-0.038938	-2.8769E-05	1.4845	0.0010968	738.859327042214	10.738	0.27488	10.738	10.622	10.897	0	459	40	1.01763759082241	0.0261865738228477	1.01763759082241	411.40681938279	0	10.5866127039233						384	32	4	NaN	NaN	NaN	8.2977E-08	1	17762	157.77	136.68	1	114250			2760	2947	2350	2398	2760	2760		
DIQSCTVEVHFQK	13	Unmodified	_DIQSCTVEVHFQK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.882672	1589.75079	2.8371	0.002258	-0.66809	-0.00053172	2.169	0.0017263	795.882445072675	7.9881	0.088639	7.9881	7.9438	8.0325	8.8818E-16	333	37	1.10198982404297	0.024034244886211	1.10198982404297	445.211410079294	0	9.7099989696128						293	11	4	NaN	NaN	NaN	0.00073254	1	21265	77.358	67.108	1	84862			2761	3042	2351	2399	2761	2761		
DISEASVFDAYVLPK	15	Unmodified	_DISEASVFDAYVLPK_			0	0	0	P62854	P62854	P62854	RPS26	40S ribosomal protein S26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.422153	1652.82975	1.6205	0.0013408	1.8215	0.0015071	3.442	0.002848	827.423741412118	17.105	0.39015	17.105	17.025	17.415	0	192	85	1.1958073123591	0.0557492644303359	1.1958073123591	482.955037374858	0	22.515657671851						1950	45	6	NaN	NaN	NaN	1.0247E-11	1	23138	163.59	151	1	1434400			2762	1405	2352	2400	2762	2762		
DISILQCHGDCDPLVPLMFGSLTVEK	26	Unmodified	_DISILQCHGDCDPLVPLMFGSLTVEK_			0	0	0	O75608	O75608	O75608	LYPLA1	Acyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	982.146622	2943.41804	0.74992	0.00073653	-0.13434	-0.00013194	0.61557	0.00060458	982.481239904208	19.933	0.035468	19.933	19.915	19.951	0	414	58	1.04781950764076	0.0381935145621466	1.04781950764076	632.459757166619	0	23.053456028609						213	5	5	NaN	NaN	NaN	0.0010568	1	38136	26.931	26.376	1	35642			2763	347	2353	2401	2763	2763		
DISLSDYK	8	Unmodified	_DISLSDYK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.73474	939.454927	-0.31028	-0.00014606	-1.7558	-0.00082649	-2.066	-0.00097255	470.734945999947	8.0591	0.16863	8.0591	7.9881	8.1567	0	750	73	0.820941264895493	0.048974968251866	0.820941264895493	333.641004875888	0	19.9040519949955						446	20	3	NaN	NaN	NaN	0.018291	1	3055	53.679	39.144	1	324810			2764	1564	2354	2402	2764	2764		
DISSDAFTALDPLGDK	16	Unmodified	_DISSDAFTALDPLGDK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.904325	1663.7941	1.812	0.0015092	0.75391	0.00062794	2.5659	0.0021371	832.9050110633	17.309	0.24827	17.309	17.202	17.45	0	357	76	1.08596037261705	0.0501024223398123	1.08596037261705	438.566731253144	0	20.2339386845974						1333	29	6	NaN	NaN	NaN	2.1704E-24	1	23448	178.52	135.36	1	750190			2765	1489	2355	2403	2765	2765		
DISTTLNADEAVAR	14	Unmodified	_DISTTLNADEAVAR_			0	0	0	O95757;Q92598	O95757;Q92598	Q92598	HSPA4L;HSPH1	Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.370452	1474.72635	1.7923	0.0013234	0.7289	0.0005382	2.5212	0.0018616	738.371853920279	9.913	0.34581	9.913	9.8332	10.179	0	450	58	1.02367897599655	0.0382515551187681	1.02367897599655	413.851753844505	0	15.4642945145679						1101	40	4	NaN	NaN	NaN	8.9568E-17	1	17733	165.39	142.49	1	544600			2766	2415;450	2356	2404	2766	2766		
DITDPLSLNTCTDEGHVVLASPLK	24	Unmodified	_DITDPLSLNTCTDEGHVVLASPLK_			0	0	0	Q7L2J0	Q7L2J0	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.770537	2594.28978	1.3546	0.0011728	-0.10922	-9.4558E-05	1.2454	0.0010783	865.770021498772	15.624	0.097518	15.624	15.588	15.686	-1.7764E-15	429	91	1.03776581230406	0.0604014016527969	1.03776581230406	626.787753419981	0	36.481119725191						468	12	4	NaN	NaN	NaN	1.0377E-06	1	37223	64.56	60.402	1	91438			2767	2116	2357	2405	2767	2767		
DITGTLSNPEVFNYGVETHEAYK	23	Unmodified	_DITGTLSNPEVFNYGVETHEAYK_			0	0	0	P16083	P16083	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	862.078247	2583.21291	2.6359	0.0022723	-0.21872	-0.00018855	2.4172	0.0020838	862.412322068198	13.832	0.18619	13.832	13.77	13.957	0	408	52	1.0518390438467	0.0341731416799977	1.0518390438467	635.302193172338	0	20.6402985170569						860	22	6	NaN	NaN	NaN	3.4711E-13	1	37170	166.46	161.12	1	299770			2768	722	2359	2406	2768	2768		
DITLFHAMDTLHK	13	Unmodified	_DITLFHAMDTLHK_			0	0	0	Q13330	Q13330	Q13330	MTA1	Metastasis-associated protein MTA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.597543	1540.7708	-1.0296	-0.00052981	0.08621	4.4364E-05	-0.94335	-0.00048545	514.597901282545	12.777	0.13302	12.777	12.724	12.857	0	771	28	0.806643990516186	0.0183924424534009	0.806643990516186	488.965850742275	0	11.1490030015603						257	16	4	NaN	NaN	NaN	0.014581	1	19741	41.824	27.369	1	74449			2769	1654	2360	2407	2769	2769		
DITLFHAMDTLQR	13	Unmodified	_DITLFHAMDTLQR_			0	0	0	O94776	O94776	O94776	MTA2	Metastasis-associated protein MTA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.932814	1559.77661	-2.8389	-0.0014789	0.97489	0.00050785	-1.864	-0.00097102	520.933337501443	14.799	0.11528	14.799	14.764	14.879	0	783	25	0.798467866007927	0.0163590783051756	0.798467866007927	483.95724426262	0	9.91535763966556						207	14	4	NaN	NaN	NaN	0.00024992	1	20340	57.293	52.464	1	54248			2770	385	2361	2408	2770	2770		
DITLFHAMDTLQR	13	Unmodified	_DITLFHAMDTLQR_			0	0	0	O94776	O94776	O94776	MTA2	Metastasis-associated protein MTA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.895583	1559.77661	0.45256	0.0003534	5.2706	0.0041158	5.7231	0.0044692	780.899906385707	14.808	0.088686	14.808	14.772	14.861	0	372	22	1.07593298845566	0.0140441447605724	1.07593298845566	434.756382351926	0	5.67487160896246						97	11	3	NaN	NaN	NaN	0.0032751	1	20342	62.705	37.884	1	56879			2771	385	2361	2408	2771	2771		
DITPLQVVLPNTALHLK	17	Unmodified	_DITPLQVVLPNTALHLK_			0	0	0	Q14764	Q14764	Q14764	MVP	Major vault protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.703288	1871.08803	-0.30565	-0.00019094	-0.96689	-0.00060402	-1.2725	-0.00079496	625.037447794768	16.945	0.13301	16.945	16.874	17.007	0	549	25	0.957085760909907	0.0161806815311534	0.957085760909907	579.247671573679	0	9.79287592000674						325	16	4	NaN	NaN	NaN	0.030697	1	28969	38.14	37.573	1	82891			2772	1774	2362	2409	2772	2772		
DITSDTSGDFR	11	Unmodified	_DITSDTSGDFR_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.270207	1212.52586	1.3052	0.00079259	0.62495	0.00037951	1.9301	0.0011721	607.2706166518	6.8707	0.39908	6.8707	6.8087	7.2077	0	618	67	0.910492137470517	0.0446265209957717	0.910492137470517	368.831656396107	0	18.0777768205594						1138	46	5	NaN	NaN	NaN	9.1114E-17	1	9798	196.32	188.14	1	936430			2773	506	2363	2410	2773	2773		
DIVAAIQHNYK	11	Unmodified	_DIVAAIQHNYK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.340769	1270.66699	1.4283	0.00090891	0.05084	3.2351E-05	1.4792	0.00094126	636.340644872497	8.5559	0.12413	8.5559	8.5205	8.6446	0	489	43	0.997481546940468	0.0282340678314075	0.997481546940468	403.862097981903	0	11.4314594630152						292	15	3	NaN	NaN	NaN	6.2261E-08	1	11530	102.55	92.458	1	85118			2774	2001	2364	2411	2774	2774		
DIVEELSALK	10	Unmodified	_DIVEELSALK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.810979	1115.6074	-0.79572	-0.00044466	-1.3325	-0.0007446	-2.1282	-0.0011893	558.810311210482	15.695	0.14187	15.695	15.642	15.783	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	354.36407619253	0	9.89765709335273						366	17	4	NaN	NaN	NaN	0.00051154	1	7152	65.404	45.17	1	125910			2775	1074	2365	2412	2775	2775		
DIVEMLFTQPNIELNQQNK	19	Unmodified	_DIVEMLFTQPNIELNQQNK_			0	0	0	Q92882	Q92882	Q92882	OSTF1	Osteoclast-stimulating factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.57537	2273.13618	-0.080972	-9.2112E-05	0.74833	0.00085128	0.66735	0.00075917	1138.07770160447	19.312	0.053188	19.312	19.286	19.339	0	96	40	1.2593374219024	0.0257578369034963	1.2593374219024	507.457689755273	0	10.3792773730139						190	7	4	NaN	NaN	NaN	2.6356E-05	1	35396	66.619	53.274	1	29006			2776	2438	2366	2413	2776	2776		
DIVENICGR	9	Unmodified	_DIVENICGR_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.263673	1074.51279	0.6183	0.00033281	-1.4429	-0.00077668	-0.82463	-0.00044387	538.262309454489	7.8463	0.15964	7.8463	7.7664	7.9261	0	699	34	0.85560534332665	0.0224016640756647	0.85560534332665	347.098077150591	0	9.08780500996494						316	19	3	NaN	NaN	NaN	0.00094714	1	6058	79.809	65.274	1	72776			2777	1042	2367	2414	2777	2777		
DIVENYFMR	9	Unmodified	_DIVENYFMR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.781699	1185.54884	1.4011	0.00083194	-1.7066	-0.0010134	-0.30554	-0.00018143	593.781179347922	13.558	0.20391	13.558	13.496	13.7	0	591	55	0.928742107665821	0.0364670917031453	0.928742107665821	376.320882091072	0	14.7762527441704						718	24	5	NaN	NaN	NaN	8.1178E-06	1	9013	121.31	80.288	1	416040			2778	1648	2368	2415	2778	2778		
DIVINANPASPPLSLLVLHR	20	Unmodified	_DIVINANPASPPLSLLVLHR_			0	0	0	Q13155	Q13155	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.747668	2138.22117	0.25911	0.00018494	-0.19415	-0.00013857	0.064968	4.6371E-05	714.081894225243	17.956	0.40786	17.956	17.841	18.248	0	579	46	0.936845902828289	0.0303703038284173	0.936845902828289	566.476973573574	0	18.3638288295798						654	47	3	NaN	NaN	NaN	0.00022008	1	33857	63.947	50.088	1	137600			2779	1636	2369	2416	2779	2779		
DIVLVAYSALGSQR	14	Unmodified	_DIVLVAYSALGSQR_			0	0	0	P42330	P42330	P42330	AKR1C3	Aldo-keto reductase family 1 member C3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.411923	1490.80929	1.4025	0.0010468	1.2069	0.00090084	2.6094	0.0019477	746.412699167944	15.801	0.17738	15.801	15.757	15.934	0	315	31	1.11400032671325	0.0200119941897818	1.11400032671325	450.321596842764	0	8.08961448524815						432	21	4	NaN	NaN	NaN	9.2738E-05	1	18268	93.162	75.692	1	152450			2780	1048	2370	2417	2780	2780		
DIVMPTYDLTDSVLETMGR	19	Unmodified	_DIVMPTYDLTDSVLETMGR_			0	0	0	Q6UW63	Q6UW63	Q6UW63	KDELC1	KDEL motif-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.51613	2155.01771	1.0466	0.0011287	1.8011	0.0019425	2.8476	0.0030712	1079.01956610927	19.827	0.070935	19.827	19.791	19.862	0	129	40	1.23753038177212	0.0257896256378105	1.23753038177212	498.836446803798	0	10.395546975698						137	9	3	NaN	NaN	NaN	6.7544E-05	1	34108	46.206	42.566	1	24726			2781	2085	2371	2418	2781	2781		
DIVNMLMHHDR	11	Unmodified	_DIVNMLMHHDR_			0	0	0	P11216;P11217	P11216;P11217	P11216	PYGB;PYGM	Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.888551	1379.64382	-1.7369	-0.00080051	-1.6577	-0.00076402	-3.3946	-0.0015645	460.888094480454	11.367	0.088722	11.367	11.332	11.42	0	837	22	0.761618911097395	0.0143471216299236	0.761618911097395	462.152046951713	0	8.70586527267375						164	11	4	NaN	NaN	NaN	0.053834	1	14795	29.755	18.395	1	31084			2782	646;647	2372	2419	2782	2782		
DIVPGDIVEIAVGDK	15	Unmodified	_DIVPGDIVEIAVGDK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.416871	1538.81919	0.9314	0.00071757	-0.96109	-0.00074044	-0.029692	-2.2875E-05	770.416030695766	17.912	0.20392	17.912	17.849	18.053	0	477	94	1.0055473068722	0.0624277176564617	1.0055473068722	406.364078360959	0	25.2284320949113						956	24	4	NaN	NaN	NaN	0.00024619	1	19701	47.915	44.57	1	389380			2783	730	2373	2420	2783	2783		
DIVVQETMEDIDK	13	Unmodified	_DIVVQETMEDIDK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.868896	1533.72324	1.655	0.0012708	-1.2775	-0.00098099	0.37742	0.00028981	767.867893471262	12.582	0.2128	12.582	12.511	12.724	0	429	46	1.03776581230406	0.0301735847803846	1.03776581230406	419.396719907854	0	12.1941793945386						763	25	5	NaN	NaN	NaN	2.3446E-11	1	19540	117.21	72.64	1	336000			2784	241	2374	2421	2784	2784		
DIVVQETMEDIDK	13	Oxidation (M)	_DIVVQETM(Oxidation (M))EDIDK_	DIVVQETM(1)EDIDK	DIVVQETM(82)EDIDK	0	1	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.866353	1549.71815	2.0966	0.0016267	-2.4908	-0.0019326	-0.39419	-0.00030584	775.865063693372	8.68	0.1953	8.68	8.6091	8.8044	0	423	100	1.04178812298108	0.0663270087780938	1.04178812298108	420.983404024432	0	26.8025420123431						678	23	4	NaN	NaN	NaN	0.00084272	1	20035	81.799	38.493	1	176630			2785	241	2374	2422	2785	2785	46	
DIWDFLR	7	Unmodified	_DIWDFLR_			0	0	0	Q8NFF5	Q8NFF5	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.747985	963.481417	-1.778	-0.00085831	-0.012904	-6.2295E-06	-1.7909	-0.00086454	482.747680343282	19.011	0.062069	19.011	18.993	19.055	0	732	22	0.833184998970724	0.014277408192748	0.833184998970724	338.495241121953	0	5.80043415900553						66	8	2	NaN	NaN	NaN	0.036921	1	3505	54.056	41.503	1	13559			2786	2316	2375	2423	2786	2786		
DIYYNNMEEVCGGEK	15	Unmodified	_DIYYNNMEEVCGGEK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.876927	1819.7393	1.9866	0.0018095	1.1652	0.0010614	3.1518	0.0028709	910.878035011494	9.4253	0.20392	9.4253	9.3721	9.576	0	330	43	1.10399226369747	0.0280360922618905	1.10399226369747	445.533223868076	0	11.3144004544635						619	24	5	NaN	NaN	NaN	7.9717E-12	1	27710	149.02	144.77	1	224680			2787	2029	2376	2424	2787	2787		
DKDDDEVFEK	10	Unmodified	_DKDDDEVFEK_			0	0	1	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.272415	1238.53028	2.8036	0.001739	-1.2788	-0.00079322	1.5248	0.00094577	620.271722646321	3.9711	0.24829	3.9711	3.9002	4.1484	0	606	37	0.918606045818476	0.0243349817538098	0.918606045818476	372.030590647812	0	9.85553891843489						556	29	4	NaN	NaN	NaN	0.00061971	1	10562	110.52	86.4	1	230400			2788	1544	2377	2425	2788	2788		
DKDDDGGEDDDANCNLICGDEYGPETR	27	Unmodified	_DKDDDGGEDDDANCNLICGDEYGPETR_			0	0	1	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1015.7246	3044.15198	1.9143	0.0019444	0.17039	0.00017307	2.0847	0.0021175	1016.05937428325	9.177	0.10648	9.177	9.1238	9.2303	0	480	106	1.00353128488872	0.0706487133492896	1.00353128488872	605.633256792273	0	42.6366482024112						1006	13	6	NaN	NaN	NaN	0.00081028	1	38281	23.876	23.858	1	235550			2789	1575	2378	2426	2789	2789		
DKPDNFQLFQSPHGK	15	Unmodified	_DKPDNFQLFQSPHGK_			0	0	1	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.625037	1756.85328	0.83684	0.00049091	0.29514	0.00017314	1.132	0.00066405	586.625214027205	7.8463	0.1951	7.8463	7.7664	7.9615	8.8818E-16	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	531.632123684511	0	13.5455988380376						466	23	4	NaN	NaN	NaN	0.0011838	1	26063	108.5	98.753	1	137220		+	2790	37	2379	2427	2790	2790		
DKPEEQWWNAEDSEGK	16	Unmodified	_DKPEEQWWNAEDSEGK_			0	0	1	P46108	P46108	P46108	CRK	Adapter molecule crk	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.950026	1946.82825	-0.71845	-0.00046696	0.12835	8.3422E-05	-0.5901	-0.00038354	649.949937506266	8.6357	0.097718	8.6357	8.5914	8.6891	0	759	31	0.814815566123307	0.0204204181290417	0.814815566123307	493.001789154335	0	12.3553146152999						216	12	3	NaN	NaN	NaN	0.00013163	1	30651	102.03	96.641	1	50669			2791	1078	2380	2428	2791	2791		
DKPELQFPFLQDEDTVATLLECK	23	Unmodified	_DKPELQFPFLQDEDTVATLLECK_			0	0	1	P09543	P09543	P09543	CNP	2,3-cyclic-nucleotide 3-phosphodiesterase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	912.786076	2735.3364	0.25864	0.00023608	0.26426	0.00024121	0.52289	0.00047729	913.454303307731	19.96	0.053204	19.96	19.933	19.986	0	477	13	1.0055473068722	0.00806353090932244	1.0055473068722	607.16156268985	0	4.86885698389551						49	7	4	NaN	NaN	NaN	0.00050052	1	37712	39.48	30.992	1	7592.9			2792	605	2381	2429	2792	2792		
DLADELALVDVIEDK	15	Unmodified	_DLADELALVDVIEDK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.289209	1656.8458	-0.5603	-0.00031001	0.88159	0.00048778	0.32129	0.00017777	553.290088889838	19.836	0.03548	19.836	19.818	19.853	0	666	22	0.877991458330206	0.0142358237480561	0.877991458330206	531.882999382449	0	8.62399350467069						79	5	3	NaN	NaN	NaN	0.014532	1	23244	41.317	31.575	1	18321			2793	471	2382	2430	2793	2793		
DLADELALVDVIEDK	15	Unmodified	_DLADELALVDVIEDK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.430175	1656.8458	3.1572	0.0026187	-0.00043306	-3.5919E-07	3.1568	0.0026183	829.430098980119	19.827	0.29263	19.827	19.791	20.084	0	345	298	1.09397730668811	0.197617333542621	1.09397730668811	441.81968728993	0	79.8108223772897						2385	34	6	NaN	NaN	NaN	6.0275E-44	1	23246	282.16	227.58	1	3839900			2794	471	2382	2430	2794	2794		
DLADELALVDVIEDK	15	Unmodified	_DLADELALVDVIEDK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.430175	1656.8458	1.7305	0.0014353	2.4203	0.0020074	4.1507	0.0034427	829.43057438697	18.931	0.062065	18.931	18.896	18.958	0	351	25	1.08996939197032	0.0160338690553592	1.08996939197032	440.20101997755	0	6.47552634445702						111	8	3	NaN	NaN	NaN	0.017715	1	23247	29.98	24.364	1	23511			2795	471	2382	2430	2795	2795		
DLAEITTLDR	10	Unmodified	_DLAEITTLDR_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.803685	1145.59282	-0.084681	-4.859E-05	-2.8092	-0.001612	-2.8939	-0.0016605	573.80261186383	11.669	0.133	11.669	11.589	11.722	0	645	55	0.892219381832517	0.0365581956836764	0.892219381832517	361.667099105216	0	14.8191093476134						487	16	5	NaN	NaN	NaN	6.0618E-05	1	7945	105.36	89.776	1	190820			2796	2719	2383	2431	2796	2796		
DLAEVGEGGGHSQAR	15	Unmodified	_DLAEVGEGGGHSQAR_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.850218	1481.68588	2.4684	0.0018312	-1.3354	-0.00099066	1.133	0.00084052	741.849353984873	3.6076	0.088655	3.6076	3.581	3.6696	0	399	37	1.0578662689527	0.0241072414200156	1.0578662689527	427.654287857375	0	9.74562235724676						195	11	3	NaN	NaN	NaN	8.9387E-09	1	17956	98.167	92.264	1	41986			2797	2819	2384	2432	2797	2797		
DLAEWLEK	8	Unmodified	_DLAEWLEK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.258382	1002.50221	-0.40577	-0.0002038	-0.4719	-0.00023701	-0.87767	-0.00044082	502.258148824122	14.249	0.12413	14.249	14.196	14.32	0	681	28	0.867820189810857	0.018315911392907	0.867820189810857	352.373228988821	0	7.43706693525814						176	15	3	NaN	NaN	NaN	0.014717	1	4351	47.349	11.716	1	40929			2798	1625	2385	2433	2798	2798		
DLAFTLEER	9	Unmodified	_DLAFTLEER_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.279846	1092.54514	-0.11085	-6.0668E-05	1.5355	0.00084033	1.4246	0.00077966	547.280810162377	12.192	0.21285	12.192	12.103	12.316	0	630	43	0.902373728295776	0.0284302042688603	0.902373728295776	365.994363558897	0	11.531025550669						440	25	4	NaN	NaN	NaN	0.0047803	1	6525	69.905	28.88	1	96698			2799	1106	2386	2434	2799	2799		
DLAFVDPEDCTPLSTITR	18	Unmodified	_DLAFVDPEDCTPLSTITR_			0	0	0	Q8NE01	Q8NE01	Q8NE01	CNNM3	Metal transporter CNNM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.49351	2048.97247	0.7297	0.0007483	4.7723	0.0048939	5.502	0.0056422	1025.50043008223	17.255	0.15075	17.255	17.176	17.326	0	207	43	1.18585551256002	0.0278707851664095	1.18585551256002	478.165204174336	0	11.2381648003855						370	18	4	NaN	NaN	NaN	0.0021796	1	32524	57.279	52.462	1	66987			2800	2307	2387	2435	2800	2800		
DLAHVVEIYDFEPALK	16	Unmodified	_DLAHVVEIYDFEPALK_			0	0	0	Q9Y3T6	Q9Y3T6	Q9Y3T6	R3HCC1	R3H and coiled-coil domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.324365	1857.95127	-1.2569	-0.00077967	2.4198	0.0015011	1.163	0.00072142	620.327007266892	17.282	0.035453	17.282	17.282	17.317	0	645	13	0.892219381832517	0.00812629463788883	0.892219381832517	540.017281199146	0	4.91845349465825						33	5	2	NaN	NaN	NaN	0.0072609	1	28656	12.683	12.531	1	5253.5			2801	3398	2388	2436	2801	2801		
DLAILQCHGELDPMVPVR	18	Unmodified	_DLAILQCHGELDPMVPVR_			0	0	0	O95372	O95372	O95372	LYPLA2	Acyl-protein thioesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.351932	2062.03397	0.32664	0.00022484	-0.91845	-0.00063221	-0.5918	-0.00040737	688.685880842077	15.322	0.070915	15.322	15.287	15.358	1.7764E-15	555	52	0.953040030838688	0.034395858934352	0.953040030838688	576.406243807108	0	20.8028909692512						270	9	3	NaN	NaN	NaN	0.00082083	1	32735	50.641	49.167	1	93706			2802	428	2389	2437	2802	2802		
DLAIYYSYGDFLLGK	15	Unmodified	_DLAIYYSYGDFLLGK_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.440346	1736.86614	1.2649	0.0010998	1.531	0.0013311	2.796	0.0024309	869.943237242996	19.428	0.044318	19.428	19.419	19.463	0	318	31	1.11199926528787	0.0200147497946634	1.11199926528787	448.926493192211	0	8.08017749464221						92	6	3	NaN	NaN	NaN	0.065316	1	25518	26.465	17.203	1	13318			2803	1077	2390	2438	2803	2803		
DLALVNDQLLGFVR	14	Unmodified	_DLALVNDQLLGFVR_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.940847	1571.86714	0.75592	0.00059486	1.5324	0.0012059	2.2883	0.0018008	786.942701232381	19.046	0.16845	19.046	18.976	19.144	0	402	49	1.05585747106793	0.0321341264646959	1.05585747106793	426.61552829278	0	12.9836817123598						388	20	4	NaN	NaN	NaN	0.00035195	1	20734	60	49.213	1	95940			2804	1921	2391	2439	2804	2804		
DLANDIMTLMSHTK	14	Unmodified	_DLANDIMTLMSHTK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.593581	1588.75891	-1.4826	-0.00078667	0.27196	0.0001443	-1.2107	-0.00064237	530.5946992837	18.825	0.053219	18.825	18.807	18.86	0	708	19	0.849494101904619	0.0122233322127752	0.849494101904619	514.802075300441	0	7.4074637788716						95	7	3	NaN	NaN	NaN	0.0034266	1	21234	46.068	43.397	1	20447			2805	108	2392	2440	2805	2805		
DLAPYLPSVTPGLK	14	Unmodified	_DLAPYLPSVTPGLK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.913767	1469.81298	1.0485	0.0007716	-3.0057	-0.002212	-1.9572	-0.0014404	735.910015961277	15.296	0.17731	15.296	15.189	15.367	-1.7764E-15	435	91	1.03374239103424	0.0602764725628377	1.03374239103424	417.933180335905	0	24.3692607521039						667	21	4	NaN	NaN	NaN	0.05739	1	17589	44.598	41.719	1	166270			2806	2420	2393	2441	2806	2806		
DLAQYDAAHHEEFK	14	Unmodified	_DLAQYDAAHHEEFK_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.589993	1672.74815	0.93224	0.00052074	1.1068	0.00061826	2.0391	0.001139	558.590511820745	5.6381	0.088746	5.6381	5.6115	5.7002	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	524.447134327507	0	11.0963577584196						190	11	3	NaN	NaN	NaN	0.00052126	1	23684	54.199	41.617	1	53222			2807	1532	2394	2442	2807	2807		
DLASVNNLLK	10	Unmodified	_DLASVNNLLK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.811313	1085.60807	0.65309	0.00035516	-1.767	-0.00096092	-1.1139	-0.00060576	543.810518451802	12.742	0.1685	12.742	12.662	12.83	0	645	67	0.892219381832517	0.0447194569553507	0.892219381832517	361.904668269833	0	18.1392385820994						572	20	3	NaN	NaN	NaN	0.00096967	1	6362	96.311	53.039	1	216640			2808	1703	2395	2443	2808	2808		
DLASVQALLR	10	Unmodified	_DLASVQALLR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.319306	1084.62406	-0.33981	-0.00018462	-1.7681	-0.00096062	-2.1079	-0.0011452	543.318316215608	15.003	0.17735	15.003	14.95	15.127	0	687	46	0.863749705078866	0.0305265242845556	0.863749705078866	350.360696928932	0	12.3823999710406						447	21	4	NaN	NaN	NaN	1.4347E-05	1	6337	111.39	80.83	1	227840			2809	1703	2396	2444	2809	2809		
DLATVAFCDAQSTQEIHEK	19	Unmodified	_DLATVAFCDAQSTQEIHEK_			0	0	0	P56545	P56545	P56545	CTBP2	C-terminal-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.672276	2161.995	0.55475	0.00040034	0.93241	0.0006729	1.4872	0.0010732	722.007240650178	11.89	0.15076	11.89	11.846	11.997	0	528	46	0.971237000454584	0.0302989286426463	0.971237000454584	587.230386713027	0	18.3193716626157						467	18	5	NaN	NaN	NaN	2.7575E-15	1	34202	148.57	134.18	1	145390			2810	1287	2397	2445	2810	2810		
DLCNTHLMR	9	Unmodified	_DLCNTHLMR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	387.183076	1158.5274	-1.5045	-0.0005825	0.92241	0.00035714	-0.58205	-0.00022536	387.183284771542	5.4076	0.097555	5.4076	5.3721	5.4697	0	873	25	0.737001551771189	0.016425306665147	0.737001551771189	448.058660658427	0	9.98573325606043						154	12	3	NaN	NaN	NaN	0.035759	1	8309	36.57	33.971	1	41982			2811	1465	2398	2446	2811	2811		
DLDAPDDVDFF	11	Unmodified	_DLDAPDDVDFF_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.769508	1267.52446	-0.4236	-0.00026889	0.20788	0.00013195	-0.21573	-0.00013694	634.769672855772	18.772	0.053186	18.772	18.745	18.798	0	615	28	0.912521036363781	0.0182550299424538	0.912521036363781	369.472983362656	0	7.39132590421093						93	7	2	NaN	NaN	NaN	0.0041144	1	11429	49.96	42.314	1	17328			2812	2786	2399	2447	2812	2812		
DLDDIEDENEQLK	13	Unmodified	_DLDDIEDENEQLK_			0	0	0	Q96IZ0	Q96IZ0	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.354664	1574.69478	1.8219	0.0014363	1.9415	0.0015306	3.7633	0.0029668	788.356399733399	9.5583	0.14187	9.5583	9.514	9.6558	0	420	67	1.04379886199097	0.0441966271426135	1.04379886199097	421.736674458657	0	17.8572129479639						420	17	3	NaN	NaN	NaN	6.5186E-06	1	20807	123.42	117.16	1	104180			2813	2563	2400	2448	2813	2813		
DLDELSRYPEDK	12	Unmodified	_DLDELSRYPEDK_			0	0	1	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.903577	1478.6889	-0.98377	-0.00048589	0.62104	0.00030673	-0.36273	-0.00017915	493.903715419	7.864	0.16848	7.864	7.7931	7.9615	0	774	40	0.804600385996946	0.0265779567299061	0.804600385996946	487.909138570135	0	16.1168552721675						418	20	4	NaN	NaN	NaN	0.0072298	1	17844	72.922	62.672	1	117780			2814	1062	2401	2449	2814	2814		
DLDELSRYPEDK	12	Unmodified	_DLDELSRYPEDK_			0	0	1	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.351728	1478.6889	2.1353	0.0015809	-0.18629	-0.00013792	1.949	0.001443	740.351578443348	7.864	0.25718	7.864	7.7842	8.0414	0	444	37	1.02770517576159	0.0241505321586708	1.02770517576159	415.469114969104	0	9.76330611019853						496	30	2	NaN	NaN	NaN	4.5001E-10	1	17845	188.6	141.04	1	474640			2815	1062	2401	2449	2815	2815		
DLDEVLQTHSVFVNVSK	17	Unmodified	_DLDEVLQTHSVFVNVSK_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.002062	1928.98436	-0.98586	-0.0006349	-0.12098	-7.7909E-05	-1.1068	-0.00071281	644.33615887109	14.808	0.11528	14.808	14.764	14.879	0	690	70	0.86171403876517	0.0467943591668966	0.86171403876517	521.411674935045	0	28.3146427853112						613	14	5	NaN	NaN	NaN	2.0916E-10	1	30269	130.65	103.28	1	218720			2816	3376	2402	2450	2816	2816		
DLDEVLQTHSVFVNVSK	17	Unmodified	_DLDEVLQTHSVFVNVSK_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.499455	1928.98436	1.0279	0.00099248	1.6972	0.0016386	2.7251	0.0026311	965.501071090341	14.799	0.12416	14.799	14.755	14.879	0	177	82	1.2057522832638	0.0537102595866057	1.2057522832638	486.391559690055	0	21.6663217597004						712	15	3	NaN	NaN	NaN	0.00014171	1	30270	94.63	90.075	1	262310			2817	3376	2402	2450	2817	2817		
DLDIIDNYDYSHTVK	15	Unmodified	_DLDIIDNYDYSHTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.287979	1809.84211	-0.23607	-0.00014266	0.72381	0.00043739	0.48773	0.00029473	604.288269269266	12.112	0.15077	12.112	12.059	12.21	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	538.893598652439	0	13.5312257719626						359	18	4	NaN	NaN	NaN	1.6269E-06	1	27469	95.138	90.892	1	149740			2818	326	2403	2451	2818	2818		
DLDIIDNYDYSHTVK	15	Unmodified	_DLDIIDNYDYSHTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.928331	1809.84211	1.6235	0.0014708	0.36329	0.00032911	1.9868	0.0017999	906.43007249435	12.112	0.15076	12.112	12.068	12.219	0	207	55	1.18585551256002	0.0358437157950102	1.18585551256002	478.590206708146	0	14.4658865855326						782	18	5	NaN	NaN	NaN	4.3231E-12	1	27470	168.05	150.32	1	362330			2819	326	2403	2451	2819	2819		
DLDLDAFAEELER	13	Unmodified	_DLDLDAFAEELER_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.364835	1534.71512	1.1092	0.00085226	0.12354	9.4921E-05	1.2327	0.00094718	768.364747874841	18.993	0.070939	18.993	18.967	19.038	0	417	37	1.04580932352505	0.0241272072846639	1.04580932352505	422.644929591124	0	9.7505745977536						203	9	4	NaN	NaN	NaN	6.4377E-06	1	19566	108.2	101.45	1	52076			2820	2107	2404	2452	2820	2820		
DLDNAGELGR	10	Unmodified	_DLDNAGELGR_			0	0	0	O95602	O95602	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.256902	1058.49925	0.11857	6.2875E-05	1.4355	0.0007612	1.5541	0.00082407	530.257713959525	5.9396	0.14195	5.9396	5.8775	6.0195	0	696	28	0.857641857947968	0.018331179343674	0.857641857947968	347.990842749722	0	7.43793284957468						120	17	2	NaN	NaN	NaN	0.043391	1	5677	42.075	25.617	1	27623			2821	444	2405	2453	2821	2821		
DLDQASLAAVSQQLAPR	17	Unmodified	_DLDQASLAAVSQQLAPR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.970864	1781.92718	1.3225	0.0011797	0.69601	0.00062082	2.0186	0.0018005	891.971777750663	15.021	0.19508	15.021	14.923	15.118	1.7764E-15	138	40	1.23157729878518	0.0258073114801105	1.23157729878518	497.10191255631	0	10.4166128324658						630	23	4	NaN	NaN	NaN	9.1691E-07	1	26727	100.69	82.594	1	160680			2822	3406	2406	2454	2822	2822		
DLDSLHR	7	Unmodified	_DLDSLHR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.219591	854.42463	-0.2798	-0.00011982	1.3239	0.00056692	1.0441	0.00044711	428.220234503303	3.5278	0.22179	3.5278	3.4567	3.6785	0	810	34	0.78005493425781	0.0225203682551777	0.78005493425781	317.478680348794	0	9.16568369819413						422	26	3	NaN	NaN	NaN	0.032518	1	1625	66.087	26.326	1	134640			2823	2294	2407	2455	2823	2823		
DLDVAILVGSMPR	13	Unmodified	_DLDVAILVGSMPR_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.376494	1384.73844	0.74056	0.00051349	0.8634	0.00059866	1.604	0.0011121	693.377019090331	18.16	0.20392	18.16	18.08	18.284	0	402	46	1.05585747106793	0.0301361332726353	1.05585747106793	427.118594937383	0	12.1907579886088						559	24	5	NaN	NaN	NaN	1.0486E-05	1	14984	141.29	115.44	1	239640			2824	1022	2408	2456	2824	2824		
DLEADEEDTR	10	Unmodified	_DLEADEEDTR_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.751847	1191.48914	2.3353	0.0013936	0.52599	0.00031389	2.8613	0.0017075	596.752147748437	4.0598	0.25716	4.0598	4.0066	4.2637	0	594	40	0.926715457081489	0.0263501137530128	0.926715457081489	375.478149713263	0	10.6762997003138						630	30	4	NaN	NaN	NaN	3.2865E-05	1	9197	90.761	82.579	1	276780			2825	776	2409	2457	2825	2825		
DLEADIIGDTSGHFQK	16	Unmodified	_DLEADIIGDTSGHFQK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.616208	1744.82679	-0.043378	-2.5273E-05	-0.33606	-0.0001958	-0.37944	-0.00022107	582.616028124744	13.336	0.097577	13.336	13.292	13.389	0	642	28	0.894250814548268	0.0182828962008553	0.894250814548268	541.506507830237	0	11.0710631890774						298	12	4	NaN	NaN	NaN	1.7666E-06	1	25741	115.04	111.53	1	87769			2826	573	2410	2458	2826	2826		
DLEADIIGDTSGHFQK	16	Unmodified	_DLEADIIGDTSGHFQK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.420673	1744.82679	2.0368	0.001779	0.72753	0.00063544	2.7643	0.0024144	873.421363579964	13.327	0.204	13.327	13.274	13.478	0	222	49	1.17589687683038	0.0318785889633038	1.17589687683038	474.705523779201	0	12.8692766936822						751	24	5	NaN	NaN	NaN	2.188E-24	1	25743	201.66	180.51	1	420300			2827	573	2410	2458	2827	2827		
DLEAEHVEVEDTTLNR	16	Unmodified	_DLEAEHVEVEDTTLNR_			0	0	0	Q9H3K6	Q9H3K6	Q9H3K6	BOLA2	BolA-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.444876	1868.8752	2.3752	0.0022218	-0.78483	-0.00073416	1.5903	0.0014877	935.444022840742	8.8133	0.18628	8.8133	8.769	8.9553	0	255	103	1.15396378101328	0.067863219850318	1.15396378101328	465.607389570485	0	27.3818096912965						1035	22	5	NaN	NaN	NaN	2.4788E-24	1	28904	149.02	141.02	1	325080			2828	2879	2411	2459	2828	2828		
DLEAEHVEVEDTTLNR	16	Unmodified	_DLEAEHVEVEDTTLNR_			0	0	0	Q9H3K6	Q9H3K6	Q9H3K6	BOLA2	BolA-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.965676	1868.8752	0.92673	0.00057825	0.71725	0.00044754	1.644	0.0010258	623.965817001665	8.8133	0.19516	8.8133	8.769	8.9642	0	639	76	0.896281965493857	0.0508140477293471	0.896281965493857	542.452699274646	0	30.7539573628115						959	23	5	NaN	NaN	NaN	1.2616E-17	1	28905	236.34	224.32	1	478300			2829	2879	2411	2459	2829	2829		
DLEALLNSK	9	Unmodified	_DLEALLNSK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.776939	1001.53933	0.25152	0.00012621	-0.98567	-0.00049459	-0.73415	-0.00036838	501.77636067411	12.972	0.28376	12.972	12.866	13.15	-1.7764E-15	690	46	0.86171403876517	0.0305392436056822	0.86171403876517	349.89841918211	0	12.4004397978221						586	33	4	NaN	NaN	NaN	7.1543E-06	1	4332	122.44	80.207	1	348720			2830	493	2412	2460	2830	2830		
DLEALMFDR	9	Unmodified	_DLEALMFDR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.268424	1108.5223	0.21524	0.00011951	-0.95908	-0.00053255	-0.74384	-0.00041303	555.268115565708	15.783	0.21283	15.783	15.73	15.943	0	630	73	0.902373728295776	0.0487578006684374	0.902373728295776	365.928669483697	0	19.7721593238854						849	25	5	NaN	NaN	NaN	6.9704E-06	1	6938	129.72	95.909	1	415210			2831	991	2413	2461	2831	2831		
DLECVTNLQEVAR	13	Unmodified	_DLECVTNLQEVAR_			0	0	0	P10619	P10619	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.88013	1545.74571	1.6936	0.0013106	0.39486	0.00030558	2.0884	0.0016162	773.880426906141	11.758	0.16847	11.758	11.687	11.855	0	369	55	1.07793901817685	0.0361060601880221	1.07793901817685	435.60177177612	0	14.5906804787145						386	20	2	NaN	NaN	NaN	1.1605E-11	1	19910	171.09	143.5	1	280690			2832	630	2414	2462	2832	2832		
DLEDEVVVSYSHPHVR	16	Unmodified	_DLEDEVVVSYSHPHVR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.642757	1879.90644	0.59686	0.00037461	0.28274	0.00017746	0.87959	0.00055207	627.642926832831	9.6736	0.10641	9.6736	9.6292	9.7356	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	546.116002383037	0	9.82923822977614						199	13	4	NaN	NaN	NaN	0.0011535	1	29152	45.183	37.608	1	42342			2833	3048	2415	2463	2833	2833		
DLEDGEVPQHAGK	13	Unmodified	_DLEDGEVPQHAGK_			0	0	0	Q15059	Q15059	Q15059	BRD3	Bromodomain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.830963	1393.64737	1.8745	0.0013081	0.18364	0.00012815	2.0582	0.0014363	697.830947161401	4.1662	0.062084	4.1662	4.1396	4.2017	0	504	28	0.987393073566096	0.0181617640607624	0.987393073566096	399.397933388438	0	7.34638638527105						88	8	2	NaN	NaN	NaN	0.0019281	1	15261	40.533	33.843	1	17784			2834	1806	2416	2464	2834	2834		
DLEDLFYK	8	Unmodified	_DLEDLFYK_			0	0	0	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.758215	1041.50188	-0.12232	-6.3824E-05	-1.6184	-0.00084443	-1.7408	-0.00090825	521.757457663258	15.003	0.16848	15.003	14.959	15.127	0	684	46	0.86578508874114	0.0305350029488345	0.86578508874114	351.368619460535	0	12.3922691333891						529	20	4	NaN	NaN	NaN	0.00064412	1	5254	93.561	67.338	1	309870			2835	1644	2417	2465	2835	2835		
DLEDLQILIK	10	Unmodified	_DLEDLQILIK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.347729	1198.6809	-0.68243	-0.0004097	-1.2173	-0.0007308	-1.8997	-0.0011405	600.346819934124	16.847	0.15964	16.847	16.794	16.954	0	594	40	0.926715457081489	0.0263464629071559	0.926715457081489	375.452367955174	0	10.6740875099756						341	19	3	NaN	NaN	NaN	4.9446E-05	1	9435	88.181	51.611	1	109760			2836	2674	2418	2466	2836	2836		
DLEDQEQLLR	10	Unmodified	_DLEDQEQLLR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.817324	1257.62009	1.7353	0.0010929	-1.0254	-0.00064584	0.70984	0.00044707	629.816361065474	9.842	0.14184	9.842	9.7977	9.9396	0	567	31	0.944945209309785	0.020242660886354	0.944945209309785	382.633767955104	0	8.19679864194518						226	17	3	NaN	NaN	NaN	5.949E-05	1	11133	102.55	81.271	1	57106			2837	878	2419	2467	2837	2837		
DLEEAEEYK	9	Unmodified	_DLEEAEEYK_			0	0	0	O75347	O75347	O75347	TBCA	Tubulin-specific chaperone A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.250951	1124.48735	1.8412	0.001037	1.1524	0.00064908	2.9936	0.0016861	563.251693782784	5.7002	0.17734	5.7002	5.6559	5.8332	0	618	40	0.910492137470517	0.0263793478580419	0.910492137470517	369.156440652944	0	10.6954313620703						490	21	5	NaN	NaN	NaN	0.00014747	1	7377	99.305	79.071	1	299590			2838	320	2420	2468	2838	2838		
DLEEDHACIPIK	12	Unmodified	_DLEEDHACIPIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.56602	1438.67623	0.44546	0.00021407	0.72092	0.00034645	1.1664	0.00056052	480.566489820759	7.9881	0.36371	7.9881	7.864	8.2277	8.8818E-16	726	52	0.837263974740672	0.0346688965431766	0.837263974740672	507.847031865633	0	21.0286083465639						1001	42	5	NaN	NaN	NaN	0.00033577	1	16629	69.915	55.152	1	1314300			2839	679	2421	2469	2839	2839		
DLEEDHACIPIK	12	Unmodified	_DLEEDHACIPIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.345391	1438.67623	2.657	0.0019139	1.2628	0.00090966	3.9198	0.0028236	720.346470209237	7.9881	0.38142	7.9881	7.864	8.2454	8.8818E-16	480	100	1.00353128488872	0.0664736834066983	1.00353128488872	405.800952443025	0	26.880162527096						1980	44	3	NaN	NaN	NaN	1.4124E-16	1	16630	163.43	145.09	1	2516700			2840	679	2421	2469	2840	2840		
DLEEFFSTVGK	11	Unmodified	_DLEEFFSTVGK_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.311343	1270.60813	0.1357	8.6346E-05	-0.86186	-0.00054841	-0.72616	-0.00046206	636.310786435643	16.865	0.40795	16.865	16.679	17.087	0	576	46	0.938871150116794	0.0303787174867894	0.938871150116794	380.132009596845	0	12.299795265614						1077	47	5	NaN	NaN	NaN	0.00081968	1	11521	64.064	33.472	1	654900			2841	1753	2422	2470	2841	2841		
DLEELEVILRD	11	Unmodified	_DLEELEVILRD_			0	0	1	Q96TC7	Q96TC7	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.356282	1342.69801	0.36802	0.00024744	0.72022	0.00048425	1.0882	0.00073169	672.356648466244	18.364	0.053184	18.364	18.337	18.39	0	498	28	0.991429299781895	0.018159253288641	0.991429299781895	401.180036159425	0	7.34810832458533						112	7	3	NaN	NaN	NaN	0.0035454	1	13690	60.547	28.407	1	23318			2842	2635	2423	2471	2842	2842		
DLEFTIYDDDDVSPFLEGLEERPQR	25	Unmodified	_DLEFTIYDDDDVSPFLEGLEERPQR_			0	0	1	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1000.1366	2997.38798	0.18623	0.00018625	1.3299	0.00133	1.5161	0.0015163	1000.47144795614	19.277	0.070935	19.277	19.242	19.312	0	453	79	1.02166545906632	0.0523045183704234	1.02166545906632	616.621035104998	0	31.56812826746						308	9	4	NaN	NaN	NaN	0.010959	1	38221	16.265	13.497	1	45462			2843	841	2424	2472	2843	2843		
DLEGAGDAAAWQAEHVR	17	Unmodified	_DLEGAGDAAAWQAEHVR_			0	0	0	Q9BVL4	Q9BVL4	Q9BVL4	SELO	Selenoprotein O	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.421539	1794.82852	1.6485	0.001481	-0.70429	-0.00063275	0.94418	0.00084827	898.420294052985	9.7622	0.035492	9.7622	9.7445	9.78	0	129	19	1.23753038177212	0.0119053502080901	1.23753038177212	499.477038022472	0	4.80509339095329						52	5	3	NaN	NaN	NaN	2.7356E-14	1	27094	141.87	133.5	1	7588.6			2844	2768	2425	2473	2844	2844		
DLEGENIEIVFAKPPDQK	18	Unmodified	_DLEGENIEIVFAKPPDQK_			0	0	1	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.52567	2041.03679	1.8236	0.0018628	-2.8245	-0.0028853	-1.0009	-0.0010225	1022.0236381115	13.815	0.35465	13.815	13.575	13.93	0	81	175	1.2692388538616	0.115148640254012	1.2692388538616	511.800773590546	0	46.4318933986311						3151	41	5	NaN	NaN	NaN	2.812E-33	1	32364	208.81	190.71	1	971990			2845	263	2426	2474	2845	2845		
DLEGENIEIVFAKPPDQK	18	Unmodified	_DLEGENIEIVFAKPPDQK_			0	0	1	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.352872	2041.03679	1.5304	0.0010427	-0.5723	-0.00038994	0.95807	0.00065278	681.687310768668	13.824	0.2128	13.824	13.7	13.912	0	528	58	0.971237000454584	0.0383839585153254	0.971237000454584	587.452293705955	0	23.2165212618426						1085	25	5	NaN	NaN	NaN	6.0346E-07	1	32365	113.34	91.196	1	514590			2846	263	2426	2474	2846	2846		
DLEGLSQR	8	Unmodified	_DLEGLSQR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.237981	916.461409	-0.37843	-0.00017379	1.7534	0.00080522	1.375	0.00063143	459.238268183729	5.6471	0.23059	5.6471	5.5849	5.8155	0	762	52	0.812773098473386	0.0347074776286075	0.812773098473386	330.440792317946	0	14.1106619159714						278	27	2	NaN	NaN	NaN	0.026266	1	2635	47.349	19.645	1	71216			2847	972	2427	2475	2847	2847		
DLEGSDIDTR	10	Unmodified	_DLEGSDIDTR_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.759475	1119.5044	1.0896	0.00061098	2.1114	0.001184	3.201	0.001795	560.760874998304	5.2479	0.24837	5.2479	5.177	5.4254	0	636	58	0.898312834727904	0.0385758304413828	0.898312834727904	364.23800489604	0	15.6413033121509						675	29	3	NaN	NaN	NaN	2.1796E-07	1	7243	154.28	137.82	1	446020			2848	1264	2428	2476	2848	2848		
DLEIERPILGQNDNK	15	Unmodified	_DLEIERPILGQNDNK_			0	0	1	Q9UGV2	Q9UGV2	Q9UGV2	NDRG3	Protein NDRG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.307485	1752.90063	-0.66281	-0.00038795	-0.47431	-0.00027761	-1.1371	-0.00066557	585.306920041652	10.17	0.079814	10.17	10.135	10.214	0	744	94	0.82502364452135	0.0632461727572424	0.82502364452135	499.568424703733	0	38.2968307668401						375	10	3	NaN	NaN	NaN	0.0095462	1	25977	26.465	10.178	1	69520			2849	3206	2429	2477	2849	2849		
DLEIMQILTR	10	Unmodified	_DLEIMQILTR_			0	0	0	P55210	P55210	P55210	CASP7	Caspase-7;Caspase-7 subunit p20;Caspase-7 subunit p11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.339381	1230.66421	-0.16549	-0.000102	-1.0739	-0.0006619	-1.2394	-0.00076389	616.338843848125	18.665	0.088674	18.665	18.63	18.718	0	612	31	0.914549654013882	0.0202819613609688	0.914549654013882	370.413868645822	0	8.21466580679225						179	11	3	NaN	NaN	NaN	0.00052473	1	10334	92.428	54.705	1	55149			2850	1270	2430	2478	2850	2850		
DLEIQALHAR	10	Unmodified	_DLEIQALHAR_			0	0	0	Q15643	Q15643	Q15643	TRIP11	Thyroid receptor-interacting protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.319837	1164.62512	0.79657	0.00046465	-0.92138	-0.00053746	-0.12481	-7.2804E-05	583.319170737222	8.2987	0.079866	8.2987	8.2721	8.352	0	558	22	0.951016745717027	0.0141610361284813	0.951016745717027	385.426059350149	0	5.73915483181162						64	10	2	NaN	NaN	NaN	0.0058688	1	8468	48.157	26.883	1	10105			2851	1859	2431	2479	2851	2851		
DLELAVPGTYDPNQPIIR	18	Unmodified	_DLELAVPGTYDPNQPIIR_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.02838	2010.04221	1.127	0.0011338	-0.79401	-0.0007988	0.33304	0.00033505	1006.52907414461	16.005	0.070921	16.005	15.97	16.041	0	207	64	1.18585551256002	0.0418090604716055	1.18585551256002	478.22754941972	0	16.8606076550703						262	9	3	NaN	NaN	NaN	0.013091	1	31805	25.705	18.129	1	55727			2852	1049	2432	2480	2852	2852		
DLENLGLTHLIGSPFLR	17	Unmodified	_DLENLGLTHLIGSPFLR_			0	0	0	Q9BSC4	Q9BSC4	Q9BSC4	NOL10	Nucleolar protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.351026	1894.03125	-1.3807	-0.00087306	0.87983	0.00055636	-0.50082	-0.0003167	632.685756761809	18.781	0.062095	18.781	18.754	18.816	0	717	55	0.84338031290707	0.036700593052475	0.84338031290707	510.385366553165	0	22.2099631105215						248	8	4	NaN	NaN	NaN	6.0739E-05	1	29482	59.77	50.964	1	47129			2853	2721	2433	2481	2853	2853		
DLEQQDCEIAQEIQEK	16	Unmodified	_DLEQQDCEIAQEIQEK_			0	0	0	Q8IVM0	Q8IVM0	Q8IVM0	CCDC50	Coiled-coil domain-containing protein 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.449302	1974.88405	1.5772	0.001559	-0.8202	-0.00081072	0.757	0.00074826	988.449757934733	11.651	0.14185	11.651	11.589	11.731	0	249	52	1.15795408347545	0.0339105891851352	1.15795408347545	467.032577934057	0	13.6770102652627						504	17	5	NaN	NaN	NaN	3.3111E-06	1	31193	80.379	65.364	1	94463			2854	2198	2434	2482	2854	2854		
DLETQPHMQEFR	12	Unmodified	_DLETQPHMQEFR_			0	0	0	Q32P28	Q32P28	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.905035	1529.69328	0.15057	7.6928E-05	1.5228	0.00077803	1.6734	0.00085496	510.905562034506	7.2343	0.15963	7.2343	7.1811	7.3408	8.8818E-16	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	514.973590513449	0	13.5858198175653						277	19	3	NaN	NaN	NaN	0.001981	1	19411	43.168	41.666	1	83398			2855	1928	2435	2483	2855	2855		
DLETQVIQLNEQVHSLK	17	Unmodified	_DLETQVIQLNEQVHSLK_			0	0	0	Q15555	Q15555	Q15555	MAPRE2	Microtubule-associated protein RP/EB family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.356616	1993.04802	0.34443	0.00022917	-0.56077	-0.00037311	-0.21633	-0.00014394	665.690429973817	15.304	0.0798	15.304	15.269	15.349	0	579	37	0.936845902828289	0.0243046547974741	0.936845902828289	566.742934765155	0	14.7030491853462						326	10	4	NaN	NaN	NaN	7.8083E-07	1	31511	111.38	99.897	1	104930			2856	1855	2436	2484	2856	2856		
DLETQVIQLNEQVHSLK	17	Unmodified	_DLETQVIQLNEQVHSLK_			0	0	0	Q15555	Q15555	Q15555	MAPRE2	Microtubule-associated protein RP/EB family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.531286	1993.04802	0.22036	0.00021981	1.0535	0.0010509	1.2739	0.0012708	998.034127752593	15.304	0.088659	15.304	15.278	15.367	0	69	34	1.27715511956461	0.0217682430825723	1.27715511956461	515.076641185853	0	8.77913211929251						282	11	4	NaN	NaN	NaN	1.0585E-13	1	31512	116.36	97.163	1	71642			2857	1855	2436	2484	2857	2857		
DLETSCSDIR	10	Unmodified	_DLETSCSDIR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.26661	1194.51867	0.93053	0.0005567	3.3443	0.0020008	4.2749	0.0025575	598.268731977639	5.31	0.21283	5.31	5.2479	5.4608	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.467236342972	0	8.21172990907542						302	25	4	NaN	NaN	NaN	0.0038918	1	9275	65.404	47.001	1	84754			2858	1736	2437	2485	2858	2858		
DLEVALTHK	9	Unmodified	_DLEVALTHK_			0	0	0	Q5JRA6	Q5JRA6	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.284931	1024.55531	0.57614	0.00029572	-0.078812	-4.0453E-05	0.49733	0.00025527	513.284839563629	10.578	0.16845	10.578	10.525	10.693	0	654	46	0.886123392477847	0.0304926449170472	0.886123392477847	359.700265249538	0	12.3777484692641						342	20	2	NaN	NaN	NaN	0.070469	1	4859	36.57	6.008	1	154380			2859	1965	2438	2486	2859	2859		
DLEVALTHK	9	Unmodified	_DLEVALTHK_			0	0	0	Q5JRA6	Q5JRA6	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.284931	1024.55531	0.57631	0.00029581	-0.0364	-1.8684E-05	0.53991	0.00027713	513.285033866978	6.6402	0.1064	6.6402	6.5959	6.7023	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	360.525219085445	0	6.59917498788673						193	13	3	NaN	NaN	NaN	0.0044329	1	4860	74.486	52.558	1	45586			2860	1965	2438	2486	2860	2860		
DLEVTCDPDSGGSQGLR	17	Unmodified	_DLEVTCDPDSGGSQGLR_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.402154	1804.78976	2.638	0.0023832	1.8173	0.0016418	4.4554	0.004025	903.405066236155	8.1922	0.23951	8.1922	8.1479	8.3874	0	354	166	1.08796502040166	0.109907400992133	1.08796502040166	439.092686193657	0	44.3576172296262						681	28	4	NaN	NaN	NaN	2.0769E-06	1	27345	104.04	103.23	1	147440			2861	2819	2439	2487	2861	2861		
DLFDLILTCEER	12	Unmodified	_DLFDLILTCEER_			0	0	0	Q9NP77	Q9NP77	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.374149	1522.73374	1.1059	0.00084307	-0.86476	-0.00065927	0.24109	0.0001838	762.373468845622	19.774	0.053217	19.774	19.756	19.809	0	441	37	1.02971785871157	0.0241538670444676	1.02971785871157	416.171129043134	0	9.7620353319225						162	7	3	NaN	NaN	NaN	0.00016617	1	19199	68.49	37.066	1	36351			2862	2978	2440	2488	2862	2862		
DLFDPIIEDR	10	Unmodified	_DLFDPIIEDR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.81151	1231.60847	1.1551	0.00071249	-1.74	-0.0010732	-0.58487	-0.00036076	616.810383570024	15.508	0.27501	15.508	15.437	15.712	-1.7764E-15	615	103	0.912521036363781	0.0689014419102357	0.912521036363781	369.589090957125	0	27.9064484723696						1271	32	5	NaN	NaN	NaN	1.2982E-10	1	10358	174.92	153.64	1	1098000			2863	668	2441	2489	2863	2863		
DLFEDELVPLFEK	13	Unmodified	_DLFEDELVPLFEK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.405972	1592.79739	1.341	0.0010693	0.17897	0.00014271	1.5199	0.001212	797.406364484327	19.924	0.13301	19.924	19.898	20.031	0	408	82	1.0518390438467	0.0542151514483207	1.0518390438467	424.943129640473	0	21.9029292220676						721	16	4	NaN	NaN	NaN	8.245E-24	1	21356	192.14	171.96	1	730540			2864	263	2442	2490	2864	2864		
DLFNAIATGK	10	Unmodified	_DLFNAIATGK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.284931	1048.55531	-0.15921	-8.3631E-05	-2.0206	-0.0010614	-2.1798	-0.001145	525.283920759743	12.999	0.14188	12.999	12.937	13.079	0	693	43	0.85967808974117	0.028505272317873	0.85967808974117	348.859547365898	0	11.5675117430861						378	17	3	NaN	NaN	NaN	0.006935	1	5439	57.032	36.799	1	134200			2865	501	2443	2491	2865	2865		
DLFQVAFNR	9	Unmodified	_DLFQVAFNR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.290548	1108.56654	-0.088031	-4.8883E-05	-0.83743	-0.00046502	-0.92546	-0.0005139	555.29008956419	14.994	0.18621	14.994	14.932	15.118	0	645	40	0.892219381832517	0.0264122944165538	0.892219381832517	361.810722682951	0	10.7106520270168						487	22	4	NaN	NaN	NaN	8.247E-06	1	6951	113.14	90.75	1	178170			2866	1737	2444	2492	2866	2866		
DLFQVIYNVK	10	Unmodified	_DLFQVIYNVK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.842613	1237.67067	0.23406	0.00014508	-0.5676	-0.00035182	-0.33354	-0.00020674	619.842339440713	17.255	0.22169	17.255	17.193	17.415	0	555	85	0.953040030838688	0.056671649078182	0.953040030838688	385.979124542683	0	22.9518937188162						1254	26	4	NaN	NaN	NaN	0.00064025	1	10556	83.623	72.921	1	765340			2867	1489	2445	2493	2867	2867		
DLFTASNDPLLWR	13	Unmodified	_DLFTASNDPLLWR_			0	0	0	Q9Y3I1	Q9Y3I1	Q9Y3I1	FBXO7	F-box only protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.396273	1546.77799	0.70654	0.00054714	0.25496	0.00019744	0.96151	0.00074459	774.397541267298	18.107	0.088639	18.107	18.071	18.16	0	414	37	1.04781950764076	0.0241238779184587	1.04781950764076	423.427784669767	0	9.74854935432154						165	11	3	NaN	NaN	NaN	0.0064627	1	19948	43.168	33.654	1	35562			2868	3396	2446	2494	2868	2868		
DLGDLIEATEFDR	13	Unmodified	_DLGDLIEATEFDR_			0	0	0	Q6NXR4	Q6NXR4	Q6NXR4	TTI2	TELO2-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.359553	1492.70455	0.91144	0.00068117	4.1601	0.0031091	5.0715	0.0037902	747.362919099028	17.69	0.10639	17.69	17.654	17.761	0	438	55	1.03173026378327	0.0362208047125181	1.03173026378327	417.060004801743	0	14.6416650917386						469	13	3	NaN	NaN	NaN	7.3281E-06	1	18319	101.45	65.205	1	119070			2869	2049	2447	2495	2869	2869		
DLGEELEALK	10	Unmodified	_DLGEELEALK_			0	0	0	P35579;P35749	P35579	P35579	MYH9;MYH11	Myosin-9;Myosin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.792786	1115.57102	0.86044	0.00048081	-2.251	-0.0012578	-1.3905	-0.00077702	558.791884574164	13.903	0.20394	13.903	13.841	14.045	0	648	97	0.890187667287968	0.0650375000001896	0.890187667287968	360.958999133368	0	26.3718222223029						1025	24	4	NaN	NaN	NaN	2.7052E-05	1	7144	88.181	51.97	1	584450			2870	972	2448	2496	2870	2870		
DLGELLQAWGAGAK	14	Unmodified	_DLGELLQAWGAGAK_			0	0	0	O60826	O60826	O60826	CCDC22	Coiled-coil domain-containing protein 22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.877716	1427.74088	-0.046962	-3.3572E-05	-0.93841	-0.00067085	-0.98537	-0.00070442	715.377964158663	19.082	0.079771	19.082	19.064	19.144	0	495	46	0.993446994398923	0.0302486975418772	0.993446994398923	401.752447213228	0	12.2326488790825						171	10	3	NaN	NaN	NaN	0.00099507	1	16320	64.906	50.451	1	34107			2871	285	2449	2497	2871	2871		
DLGFFGIYK	9	Unmodified	_DLGFFGIYK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.279118	1058.54368	-0.64355	-0.00034126	-2.284	-0.0012111	-2.9275	-0.0015524	530.27774270733	16.555	0.1862	16.555	16.51	16.697	0	681	64	0.867820189810857	0.0427134196755701	0.867820189810857	352.120559491654	0	17.3310939415244						501	22	4	NaN	NaN	NaN	0.021203	1	5681	42.835	32.007	1	168240			2872	3248	2450	2498	2872	2872		
DLGGFDEDAEPR	12	Unmodified	_DLGGFDEDAEPR_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.788763	1319.56297	1.2396	0.00081912	1.7697	0.0011694	3.0093	0.0019885	660.789984876721	8.7245	0.15983	8.7245	8.6712	8.831	0	498	37	0.991429299781895	0.0242106659523326	0.991429299781895	401.251684026313	0	9.79855092734209						416	19	4	NaN	NaN	NaN	0.0016384	1	12945	66.664	62.771	1	147670			2873	2709	2451	2499	2873	2873		
DLGGIVLANACGPCIGQWDR	20	Unmodified	_DLGGIVLANACGPCIGQWDR_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.51987	2171.02519	0.24355	0.00026462	1.2523	0.0013607	1.4959	0.0016253	1087.02207825831	17.078	0.1596	17.078	17.034	17.193	0	144	46	1.22760721615852	0.0297695038365577	1.22760721615852	494.813150149646	0	11.9992305176032						386	19	3	NaN	NaN	NaN	0.0013869	1	34323	50.519	43.837	1	93751			2874	2674	2452	2500	2874	2874		
DLGIFGLYK	9	Unmodified	_DLGIFGLYK_			0	0	0	O75746	O75746	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.286943	1024.55933	-1.0095	-0.00051818	-1.3612	-0.00069868	-2.3707	-0.0012169	513.285918925935	16.528	0.11526	16.528	16.484	16.599	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	347.312192387798	0	8.26731121324889						192	14	3	NaN	NaN	NaN	0.012745	1	4863	34.931	24.103	1	38054			2875	356	2453	2501	2875	2875		
DLGLPTEAYISVEEVHDDGTPTSK	24	Unmodified	_DLGLPTEAYISVEEVHDDGTPTSK_			0	0	0	P51665	P51665	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	858.413296	2572.21806	1.7447	0.0014977	0.099851	8.5713E-05	1.8446	0.0015834	858.747378071937	14.657	0.12415	14.657	14.604	14.728	0	399	49	1.0578662689527	0.0321474274065014	1.0578662689527	638.957202461603	0	19.4172277582226						548	15	5	NaN	NaN	NaN	0.0003611	1	37122	38.656	37.559	1	121020			2876	1196	2454	2502	2876	2876		
DLGLSESGEDVNAAILDESGK	21	Unmodified	_DLGLSESGEDVNAAILDESGK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.0055	2117.99644	1.815	0.0019239	0.042195	4.4727E-05	1.8572	0.0019686	1060.50730860367	14.24	0.25713	14.24	14.178	14.435	0	180	103	1.203763835057	0.0675748671364431	1.203763835057	485.27979958502	0	27.2418202191667						1220	30	6	NaN	NaN	NaN	2.9622E-59	1	33585	228.55	202.04	1	385610			2877	680	2455	2503	2877	2877		
DLGNLVLRPFGLSTENFQIK	20	Unmodified	_DLGNLVLRPFGLSTENFQIK_			0	0	1	Q99614	Q99614	Q99614	TTC1	Tetratricopeptide repeat protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.414465	2260.22157	-0.29993	-0.00022627	0.14337	0.00010816	-0.15655	-0.00011811	754.748947319645	19.1	0.079771	19.1	19.064	19.144	0	540	64	0.963152256458504	0.0424948927887633	0.963152256458504	582.18073680286	0	25.6861859879643						323	10	4	NaN	NaN	NaN	2.3378E-05	1	35282	89.923	88.075	1	81560			2878	2657	2456	2504	2878	2878		
DLGTESQIFISR	12	Unmodified	_DLGTESQIFISR_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.354074	1364.69359	1.0221	0.00069845	1.2793	0.00087423	2.3014	0.0015727	683.355145391997	12.423	0.15073	12.423	12.378	12.529	0	501	52	0.98941132619024	0.0343150509571248	0.98941132619024	400.297713756767	0	13.8832415619052						454	18	4	NaN	NaN	NaN	1.2429E-39	1	14340	232.46	196.25	1	217030			2879	1161	2457	2505	2879	2879		
DLGVFIPAPMAQGMR	15	Unmodified	_DLGVFIPAPMAQGMR_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.910178	1601.8058	0.92972	0.00074555	0.606	0.00048595	1.5357	0.0012315	801.910864607059	17.424	0.15962	17.424	17.344	17.504	0	411	52	1.04982941439551	0.0341589991885669	1.04982941439551	424.110675395611	0	13.7995716428301						529	19	4	NaN	NaN	NaN	0.00016902	1	21645	78.932	71.374	1	112600			2880	1457	2458	2506	2880	2880		
DLGVTDVLCEACDQLGWTK	19	Unmodified	_DLGVTDVLCEACDQLGWTK_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.50355	2178.99255	0.22421	0.00024451	2.2888	0.0024959	2.513	0.0027404	1091.00798141294	19.33	0.070923	19.33	19.304	19.375	0	138	58	1.23157729878518	0.0377080442186564	1.23157729878518	496.40183284144	0	15.1986743190791						375	9	5	NaN	NaN	NaN	2.2932E-05	1	34432	62.494	60.104	1	82535			2881	2849	2459	2507	2881	2881		
DLGYIYFYQR	10	Unmodified	_DLGYIYFYQR_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.32987	1336.64519	0.5955	0.00039858	1.9373	0.0012967	2.5328	0.0016953	669.330449325064	14.657	0.13301	14.657	14.604	14.737	-3.5527E-15	504	37	0.987393073566096	0.0242240595168645	0.987393073566096	399.565212732876	0	9.80267307238898						321	16	3	NaN	NaN	NaN	0.00018352	1	13491	84.368	66.898	1	80320			2882	1072	2460	2508	2882	2882		
DLHDANTDLIGR	12	Unmodified	_DLHDANTDLIGR_			0	0	0	P53985	P53985	P53985	SLC16A1	Monocarboxylate transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.333672	1338.65279	1.4279	0.00095716	0.78792	0.00052817	2.2158	0.0014853	670.334226541352	7.0214	0.16855	7.0214	6.9594	7.128	0	516	55	0.979317271586824	0.0363461485221255	0.979317271586824	396.291126232535	0	14.7078546962716						472	20	5	NaN	NaN	NaN	4.2049E-05	1	13553	105.94	87.436	1	269050			2883	1245	2461	2509	2883	2883		
DLHFEGMFK	9	Unmodified	_DLHFEGMFK_			0	0	0	Q9P0I2	Q9P0I2	Q9P0I2	EMC3	ER membrane protein complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.265684	1122.51682	-0.27067	-0.00015219	0.096112	5.4041E-05	-0.17456	-9.8148E-05	562.266262937099	11.864	0.15078	11.864	11.811	11.961	0	630	34	0.902373728295776	0.0223364666145487	0.902373728295776	365.872637430459	0	9.05644933455289						289	18	4	NaN	NaN	NaN	0.001223	1	7330	62.969	33.867	1	79553			2884	3144	2462	2510	2884	2884		
DLHIQSHISENRDEVEAVK	19	Unmodified	_DLHIQSHISENRDEVEAVK_			0	0	1	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.373218	2218.09782	1.3899	0.0010291	0.15356	0.00011369	1.5435	0.0011428	740.707673051101	6.5427	0.1064	6.5427	6.5161	6.6225	0	513	40	0.981336640919867	0.0262518066023084	0.981336640919867	593.24111714013	0	15.8698355144489						393	13	5	NaN	NaN	NaN	0.0011987	1	34877	46.823	46.388	1	142800			2885	3353	2463	2511	2885	2885		
DLHQGIEAASDEEDLR	16	Unmodified	_DLHQGIEAASDEEDLR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.946505	1796.81769	0.0099616	5.9764E-06	0.72485	0.00043487	0.73481	0.00044085	599.946906160356	8.281	0.11539	8.281	8.2454	8.3608	0	696	31	0.857641857947968	0.0203665630059481	0.857641857947968	519.219902636902	0	12.3300008774039						299	14	4	NaN	NaN	NaN	4.3839E-09	1	27127	123.99	122.52	1	87896			2886	3268	2464	2512	2886	2886		
DLHQGIEAASDEEDLR	16	Unmodified	_DLHQGIEAASDEEDLR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.416119	1796.81769	2.5786	0.0023192	-0.80045	-0.00071994	1.7782	0.0015993	899.415287359737	8.2898	0.11539	8.2898	8.2454	8.3608	0	297	64	1.12600091227925	0.0419933988669257	1.12600091227925	454.459006106707	0	16.9487236679723						529	14	4	NaN	NaN	NaN	0.00017927	1	27128	59.997	55.75	1	129730			2887	3268	2464	2512	2887	2887		
DLHTLDSHVR	10	Unmodified	_DLHTLDSHVR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.207155	1191.59963	-0.59101	-0.00023534	0.30145	0.00012004	-0.28956	-0.0001153	398.207330306064	4.0686	0.1419	4.0686	4.0332	4.1751	0	873	28	0.737001551771189	0.0184771819478337	0.737001551771189	447.912585089405	0	11.2295046211665						184	17	3	NaN	NaN	NaN	8.572E-05	1	9207	125.98	92.585	1	49445			2888	1991	2465	2513	2888	2888		
DLIALANTAGEVLLHR	16	Unmodified	_DLIALANTAGEVLLHR_			0	0	0	Q9UJX5	Q9UJX5	Q9UJX5	ANAPC4	Anaphase-promoting complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.324699	1704.95227	-0.74731	-0.00042546	1.0947	0.00062324	0.3474	0.00019778	569.325338298912	19.658	0.053204	19.658	19.632	19.685	0	669	22	0.875957769340875	0.0142377998376291	0.875957769340875	530.526955518627	0	8.62317438753325						86	7	3	NaN	NaN	NaN	3.7676E-05	1	24638	82.437	71.65	1	17193			2889	3254	2466	2514	2889	2889		
DLIDEGHAATQLVNQLHDVVVENNLSDK	28	Unmodified	_DLIDEGHAATQLVNQLHDVVVENNLSDK_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	772.390182	3085.53162	0.41979	0.00032424	-0.62265	-0.00048093	-0.20287	-0.00015669	772.640690242937	18.541	0.062059	18.541	18.506	18.568	0	489	22	0.997481546940468	0.0141199586984805	0.997481546940468	802.592814927773	0	11.3611900222488						196	8	5	NaN	NaN	NaN	2.5688E-06	1	38333	41.261	37.393	1	48575			2890	964	2467	2515	2890	2890		
DLIDNSFNR	9	Unmodified	_DLIDNSFNR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.26727	1092.51999	-0.27544	-0.00015074	1.0929	0.00059813	0.8175	0.00044739	547.267575809107	9.443	0.13301	9.443	9.3898	9.5228	0	663	37	0.880024865079826	0.0244025785468278	0.880024865079826	356.929977501852	0	9.89746103471327						322	16	3	NaN	NaN	NaN	0.0098907	1	6517	47.349	2.5288	1	130840			2891	2220	2468	2516	2891	2891		
DLIEFGMIPEFVGR	14	Unmodified	_DLIEFGMIPEFVGR_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.915984	1621.81741	1.336	0.0010847	-0.63696	-0.00051716	0.69901	0.00056754	811.915433588958	19.915	0.035443	19.915	19.898	19.933	0	357	58	1.08596037261705	0.0381198356201773	1.08596037261705	438.66047622439	0	15.3980436748765						134	5	3	NaN	NaN	NaN	0.0036006	1	22244	71.896	66.198	1	29002			2892	379	2469	2517	2892	2892		
DLIGHIVEFSQDQHGSR	17	Unmodified	_DLIGHIVEFSQDQHGSR_			0	0	0	Q8TB72	Q8TB72	Q8TB72	PUM2	Pumilio homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.653656	1936.93914	0.31037	0.0002007	0.30444	0.00019687	0.61481	0.00039757	646.987877695019	12.423	0.070955	12.423	12.387	12.458	0	615	31	0.912521036363781	0.0202875850561227	0.912521036363781	552.138130096209	0	12.2753874493583						186	9	4	NaN	NaN	NaN	0.00015523	1	30454	49.487	46.198	1	41414			2893	2335	2470	2518	2893	2893		
DLIGVQNLLK	10	Unmodified	_DLIGVQNLLK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.837331	1111.66011	0.20922	0.0001165	0.92328	0.00051412	1.1325	0.00063062	557.3399982892	15.695	0.31036	15.695	15.517	15.828	0	603	94	0.920633820089869	0.0629308305892482	0.920633820089869	373.320513649416	0	25.5186910227447						1006	36	4	NaN	NaN	NaN	0.0082184	1	7046	72.038	22.078	1	498430			2894	1703	2471	2519	2894	2894		
DLIHDQDEDEEEEEGQR	17	Unmodified	_DLIHDQDEDEEEEEGQR_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.42761	2084.84066	3.0942	0.0032286	-1.7831	-0.0018605	1.3112	0.0013681	1043.92685349482	5.6825	0.088605	5.6825	5.6471	5.7357	0	255	40	1.15396378101328	0.0259494554847892	1.15396378101328	465.251834154464	0	10.4622276350881						262	11	4	NaN	NaN	NaN	0.003586	1	33089	27.467	27.279	1	64407			2895	3309	2472	2520	2895	2895		
DLIHDQDEDEEEEEGQR	17	Unmodified	_DLIHDQDEDEEEEEGQR_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.954165	2084.84066	1.2395	0.00086262	2.1812	0.001518	3.4207	0.0023806	696.289746188696	5.6825	0.062099	5.6825	5.6559	5.7179	0	642	34	0.894250814548268	0.0223457630982734	0.894250814548268	540.810506637631	0	13.5139082523357						154	8	3	NaN	NaN	NaN	0.038936	1	33090	13.859	13.749	1	32783			2896	3309	2472	2520	2896	2896		
DLIHDVSFDFHGR	13	Unmodified	_DLIHDVSFDFHGR_			0	0	0	Q96EE3	Q96EE3	Q96EE3	SEH1L	Nucleoporin SEH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.919673	1556.73719	-0.94834	-0.00049306	-0.36773	-0.00019119	-1.3161	-0.00068426	519.919508965785	13.15	0.14191	13.15	13.105	13.247	0	753	37	0.81889964927511	0.024501095294577	0.81889964927511	496.349620025334	0	14.8505489658382						360	17	4	NaN	NaN	NaN	1.6003E-11	1	20254	152.17	141.38	1	165160			2897	2510	2473	2521	2897	2897		
DLIHTGVANDHEEDFELRK	19	Unmodified	_DLIHTGVANDHEEDFELRK_			0	0	1	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	560.275095	2237.07127	-0.053213	-2.9814E-05	0.37798	0.00021177	0.32477	0.00018196	560.525973716324	8.8133	0.15976	8.8133	8.7778	8.9375	0	711	28	0.847456455381371	0.0183388204791043	0.847456455381371	683.038593236815	0	14.780844563905						355	19	5	NaN	NaN	NaN	1.3669E-07	1	35065	102.26	94.612	1	152700			2898	3437	2474	2522	2898	2898		
DLILQCLDDKDESIR	15	Unmodified	_DLILQCLDDKDESIR_			0	0	1	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.640136	1831.89858	-0.4368	-0.00026717	-0.033325	-2.0383E-05	-0.47013	-0.00028755	611.973652353827	12.591	0.088669	12.591	12.556	12.644	0	654	25	0.886123392477847	0.0162593562180621	0.886123392477847	536.38414428705	0	9.84203886921034						112	11	2	NaN	NaN	NaN	0.00021338	1	28021	59.731	44.756	1	46010			2899	108	2475	2523	2899	2899		
DLIQMLVQR	9	Unmodified	_DLIQMLVQR_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.315709	1114.61686	-1.0655	-0.00059487	-1.3722	-0.0007661	-2.4376	-0.001361	558.315049490891	16.98	0.15077	16.98	16.918	17.069	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	361.786607589324	0	9.06225483442148						308	18	3	NaN	NaN	NaN	0.0016214	1	7125	79.809	60.553	1	81047			2900	1534	2476	2524	2900	2900		
DLIQSDIAALHHFYSK	16	Unmodified	_DLIQSDIAALHHFYSK_			0	0	0	Q9NRG4	Q9NRG4	Q9NRG4	SMYD2	N-lysine methyltransferase SMYD2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.987976	1856.9421	-0.34441	-0.00021353	-0.2098	-0.00013008	-0.55422	-0.00034361	620.322197413197	14.959	0.079817	14.959	14.923	15.003	0	669	37	0.875957769340875	0.0244093537126775	0.875957769340875	530.177056198189	0	14.7738621061899						234	10	3	NaN	NaN	NaN	0.0060098	1	28635	32.759	7.1456	1	55241			2901	3019	2477	2525	2901	2901		
DLISHDEMFSDIYK	14	Unmodified	_DLISHDEMFSDIYK_			0	0	0	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.599389	1711.77634	-1.0217	-0.00058402	-2.0232	-0.0011564	-3.0449	-0.0017405	571.598391965784	13.735	0.15073	13.735	13.7	13.85	0	750	76	0.820941264895493	0.0509907790120442	0.820941264895493	497.190060550698	0	30.8817568181968						525	18	5	NaN	NaN	NaN	0.00013948	1	24807	62.705	56.677	1	209030			2902	682	2478	2526	2902	2902		
DLISHDEMFSDIYK	14	Unmodified	_DLISHDEMFSDIYK_			0	0	0	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.895445	1711.77634	2.6487	0.0022697	3.1162	0.0026702	5.7649	0.0049399	856.89858521054	13.744	0.25714	13.744	13.691	13.948	0	327	76	1.10599442759226	0.0500748206757269	1.10599442759226	446.554083454393	0	20.2181087834884						1363	30	6	NaN	NaN	NaN	3.2887E-24	1	24809	228.28	211.99	1	890770			2903	682	2478	2526	2903	2903		
DLISHDEMFSDIYK	14	Oxidation (M)	_DLISHDEM(Oxidation (M))FSDIYK_	DLISHDEM(1)FSDIYK	DLISHDEM(88)FSDIYK	0	1	0	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.931027	1727.77125	-1.0046	-0.00057958	0.25811	0.00014891	-0.74649	-0.00043067	576.931326824753	11.491	0.097547	11.491	11.465	11.562	0	726	34	0.837263974740672	0.0224328108600214	0.837263974740672	507.037979009436	0	13.5850668667419						331	12	4	NaN	NaN	NaN	7.5317E-06	1	25250	88.24	76.283	1	95172			2904	682	2478	2527	2904	2904	217	
DLITQATLLYTMADK	15	Unmodified	_DLITQATLLYTMADK_			0	0	0	Q6PD62	Q6PD62	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.944938	1695.87532	0.83528	0.0007091	1.2081	0.0010256	2.0434	0.0017347	848.946245994838	19.383	0.062126	19.383	19.357	19.419	0	228	40	1.17191150690002	0.02591024903842	1.17191150690002	473.204270823732	0	10.4622579699039						147	8	4	NaN	NaN	NaN	1.1362E-11	1	24386	108.91	92.626	1	31762			2905	2071	2479	2528	2905	2905		
DLKPENILLDEEGHIK	16	Unmodified	_DLKPENILLDEEGHIK_			0	0	1	P51812;Q15349;Q15418	P51812;Q15418	Q15418	RPS6KA3;RPS6KA2;RPS6KA1	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.666791	1861.97854	0.49608	0.0003084	-0.028795	-1.7901E-05	0.46729	0.0002905	621.666901427433	12.032	0.15075	12.032	11.97	12.121	0	585	49	0.932794566565362	0.0324241729460041	0.932794566565362	564.566450309334	0	19.6244713257115						471	18	5	NaN	NaN	NaN	0.0045896	1	28740	63.79	49.931	1	225550			2906	1845;1200	2480	2529	2906	2906		
DLKPENLLIDQQGYLQVTDFGFAK	24	Unmodified	_DLKPENLLIDQQGYLQVTDFGFAK_			0	0	1	P22612	P22612	P22612	PRKACG	cAMP-dependent protein kinase catalytic subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.144592	2751.41195	0.45846	0.00042093	0.22068	0.00020262	0.67914	0.00062355	918.47933784401	18.701	0.017729	18.701	18.692	18.71	0	444	28	1.02770517576159	0.0181141482765854	1.02770517576159	620.522413366846	0	10.93721747226						37	3	2	NaN	NaN	NaN	0.015186	1	37759	23.983	0	1	6789.7			2907	807	2481	2530	2907	2907		
DLLADLIGCQR	11	Unmodified	_DLLADLIGCQR_			0	0	0	Q13523	Q13523	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.332087	1272.64962	0.51221	0.00032645	-1.3515	-0.00086133	-0.83924	-0.00053488	637.331349114097	17.832	0.1773	17.832	17.779	17.956	0	561	37	0.948993180460448	0.0242811063417099	0.948993180460448	384.223612152103	0	9.83081288438183						342	21	4	NaN	NaN	NaN	1.7951E-05	1	11574	126.82	105.55	1	96332			2908	1677	2482	2531	2908	2908		
DLLAVVFYGTEK	12	Unmodified	_DLLAVVFYGTEK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.866285	1353.71802	0.36331	0.00024627	-0.56878	-0.00038556	-0.20547	-0.00013928	677.866105880019	18.745	0.079791	18.745	18.718	18.798	0	462	25	1.01562323939346	0.0161181521941178	1.01562323939346	410.935987610356	0	6.52163965281005						135	10	3	NaN	NaN	NaN	0.00033336	1	14018	83.438	62.349	1	30042			2909	673	2483	2532	2909	2909		
DLLDDLK	7	Unmodified	_DLLDDLK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.226551	830.438549	-1.2806	-0.00053303	-2.025	-0.00084286	-3.3056	-0.0013759	416.225691070419	12.946	0.14189	12.946	12.893	13.034	0	822	28	0.771863999559055	0.0184334553037235	0.771863999559055	314.288340581135	0	7.50575241479515						211	17	3	NaN	NaN	NaN	0.030925	1	1318	44.767	0	1	55419			2910	591	2484	2533	2910	2910		
DLLDLIK	7	Unmodified	_DLLDLIK_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.255111	828.49567	-3.5628	-0.0014795	2.3089	0.0009588	-1.2539	-0.00052068	415.25602524292	16.83	0.088663	16.83	16.785	16.874	0	804	22	0.78414869089473	0.0143271514943355	0.78414869089473	319.302569205728	0	5.8339653367542						113	11	2	NaN	NaN	NaN	0.020261	1	1297	51.43	4.5947	1	30675			2911	3041	2485	2534	2911	2911		
DLLDLLVEAK	10	Unmodified	_DLLDLLVEAK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.829172	1127.64379	0.40474	0.00022861	0.15359	8.675E-05	0.55833	0.00031536	564.82914758944	19.446	0.12412	19.446	19.41	19.534	0	609	64	0.916577990479294	0.0426128066183624	0.916577990479294	371.611339017071	0	17.2766554414476						371	15	4	NaN	NaN	NaN	3.2865E-05	1	7469	90.761	45.272	1	223340			2912	93	2486	2535	2912	2912		
DLLDTVLPHLYNETK	15	Unmodified	_DLLDTVLPHLYNETK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.980598	1769.91997	-0.16966	-0.00010026	-0.87046	-0.00051442	-1.0401	-0.00061469	591.314269013108	17.823	0.19507	17.823	17.699	17.894	0	714	118	0.845418525735192	0.0793250254195581	0.845418525735192	511.879352125836	0	48.0292794433598						1486	23	4	NaN	NaN	NaN	0.0017161	1	26417	58.313	45.731	1	346580			2913	2175	2487	2536	2913	2913		
DLLDTVLPHLYNETK	15	Unmodified	_DLLDTVLPHLYNETK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.967259	1769.91997	1.9932	0.0017659	-0.23705	-0.00021002	1.7561	0.0015559	885.967199070798	17.823	0.22166	17.823	17.699	17.92	0	252	37	1.15595906938629	0.023945110479074	1.15595906938629	466.604547236558	0	9.66547841486255						688	26	4	NaN	NaN	NaN	2.8848E-06	1	26419	87.573	72.598	1	216970			2914	2175	2487	2536	2914	2914		
DLLEPGCSVLLNHK	14	Unmodified	_DLLEPGCSVLLNHK_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.916515	1593.81848	1.8589	0.0014833	-0.87446	-0.00069775	0.98446	0.00078552	797.916147371519	11.837	0.23055	11.837	11.687	11.917	0	336	58	1.09998710857178	0.038067338257582	1.09998710857178	444.39250476805	0	15.3791255063928						701	27	4	NaN	NaN	NaN	6.8476E-06	1	21400	90.306	76.311	1	183020			2915	1368	2488	2537	2915	2915		
DLLFILTAK	9	Unmodified	_DLLFILTAK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.318243	1032.62193	-0.32795	-0.00016966	-1.5581	-0.00080601	-1.886	-0.00097567	517.317453334821	18.461	0.1508	18.461	18.417	18.568	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	350.581908056745	0	9.08868237388464						330	18	3	NaN	NaN	NaN	0.0032423	1	5075	54.436	48.688	1	158420			2916	1884	2489	2538	2916	2916		
DLLFQALGR	9	Unmodified	_DLLFQALGR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.795466	1031.57638	0.22197	0.00011471	-2.6533	-0.0013712	-2.4314	-0.0012565	516.794171010664	15.535	0.2394	15.535	15.482	15.721	1.7764E-15	705	40	0.851531465363931	0.0264820512722772	0.851531465363931	345.627337290011	0	10.7487758697242						548	28	4	NaN	NaN	NaN	0.00013995	1	5041	117.18	63.12	1	280500			2917	3036	2490	2539	2917	2917		
DLLHLPELFSPGMLVR	16	Unmodified	_DLLHLPELFSPGMLVR_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.006202	1835.99678	-1.1505	-0.00070528	-0.17714	-0.00010859	-1.3277	-0.00081386	613.34046396933	19.978	0.035498	19.978	19.96	19.995	0	699	52	0.85560534332665	0.0346111454231356	0.85560534332665	517.90242173431	0	20.9503086597683						158	5	4	NaN	NaN	NaN	2.302E-05	1	28143	112.93	88.182	1	37208			2918	1766	2491	2540	2918	2918		
DLLHNEDRHDDYFQER	16	Unmodified	_DLLHNEDRHDDYFQER_			0	0	1	Q8N684	Q8N684	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	526.238513	2100.92494	-1.1498	-0.00060508	0.22558	0.00011871	-0.92424	-0.00048637	526.489454291041	7.261	0.097577	7.261	7.2255	7.3231	0	783	25	0.798467866007927	0.0163568017170922	0.798467866007927	643.811331158471	0	13.1886262870244						245	12	4	NaN	NaN	NaN	0.0029888	1	33330	36.46	30.844	1	81806			2919	2262	2492	2541	2919	2919		
DLLHNEDRHDDYFQER	16	Unmodified	_DLLHNEDRHDDYFQER_			0	0	1	Q8N684	Q8N684	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.315591	2100.92494	1.3015	0.00091277	0.56778	0.00039819	1.8693	0.001311	701.650004322378	7.261	0.053198	7.261	7.2432	7.2964	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	567.766540441041	0	14.6957956639122						162	7	3	NaN	NaN	NaN	0.010089	1	33331	36.181	33.792	1	31350			2920	2262	2492	2541	2920	2920		
DLLHPSLEEEK	11	Unmodified	_DLLHPSLEEEK_			0	0	0	Q71UM5	Q71UM5	Q71UM5	RPS27L	40S ribosomal protein S27-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.33535	1308.65615	1.5415	0.0010102	-1.8321	-0.0012007	-0.29061	-0.00019045	655.335671968835	8.9198	0.26615	8.9198	8.8133	9.0794	0	513	52	0.981336640919867	0.0343292904819641	0.981336640919867	397.201293693749	0	13.8949653181636						864	31	5	NaN	NaN	NaN	2.0135E-11	1	12619	133.76	98.804	1	500110			2921	2105	2493	2542	2921	2921		
DLLHPSPEEEK	11	Unmodified	_DLLHPSPEEEK_			0	0	0	P42677	P42677	P42677	RPS27	40S ribosomal protein S27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	431.882225	1292.62485	-1.1552	-0.00049891	-1.2101	-0.00052262	-2.3653	-0.0010215	432.215773625686	5.9929	0.09758	5.9929	5.9307	6.0283	0	810	31	0.78005493425781	0.0204716360591192	0.78005493425781	473.654610980273	0	12.4305153238183						183	12	3	NaN	NaN	NaN	0.046238	1	12152	34.953	15.697	1	44354			2922	1052	2494	2543	2922	2922		
DLLHPSPEEEK	11	Unmodified	_DLLHPSPEEEK_			0	0	0	P42677	P42677	P42677	RPS27	40S ribosomal protein S27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.319699	1292.62485	2.781	0.0018002	0.87463	0.00056616	3.6556	0.0023664	647.320662433367	5.984	0.39911	5.984	5.8864	6.2855	0	522	70	0.975277694896658	0.0464840904721099	0.975277694896658	394.800032560173	0	18.81712309012						1665	46	6	NaN	NaN	NaN	1.1438E-11	1	12153	175.07	118.69	1	1760800			2923	1052	2494	2543	2923	2923		
DLLHSEGSENEGPVSSSSSDCR	22	Unmodified	_DLLHSEGSENEGPVSSSSSDCR_			0	0	0	Q9NY27	Q9NY27	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.66803	2347.98226	0.90115	0.0007062	0.42908	0.00033626	1.3302	0.0010425	784.002453132949	6.7377	0.05323	6.7377	6.72	6.7732	0	615	22	0.912521036363781	0.0142022930717167	0.912521036363781	551.45063639861	0	8.58266630644073						125	7	4	NaN	NaN	NaN	1.699E-11	1	36028	117.8	110.94	1	20695			2924	3108	2495	2544	2924	2924		
DLLIAYYDVDYEK	13	Unmodified	_DLLIAYYDVDYEK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.395604	1618.77666	1.8975	0.0015377	1.638	0.0013274	3.5355	0.0028651	810.396422512513	15.854	0.34582	15.854	15.801	16.147	0	309	58	1.11800162319566	0.0380201832976437	1.11800162319566	451.610324868061	0	15.3580343483876						1024	40	5	NaN	NaN	NaN	0.00017281	1	22151	99.276	68.927	1	384420			2925	904	2496	2545	2925	2925		
DLLLNTMSQEEK	12	Unmodified	_DLLLNTMSQEEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.853049	1419.69155	1.2462	0.00088584	1.3169	0.00093611	2.563	0.001822	710.854514137658	11.802	0.26604	11.802	11.731	11.997	0	462	46	1.01562323939346	0.030219453730939	1.01562323939346	410.74290968647	0	12.2214871353223						521	31	3	NaN	NaN	NaN	0.00024089	1	16084	81.099	65.22	1	203320			2926	1465	2497	2546	2926	2926		
DLLLTSSYLSDSGSTGEHTK	20	Unmodified	_DLLLTSSYLSDSGSTGEHTK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.342813	2110.00661	0.61989	0.00043661	1.7991	0.0012672	2.419	0.0017038	704.678383232042	11.953	0.31926	11.953	11.855	12.174	0	498	163	0.991429299781895	0.109219973337549	0.991429299781895	599.533263168804	0	66.0470767130604						2138	37	6	NaN	NaN	NaN	5.4558E-16	1	33469	176	133.06	1	1303200			2927	576	2498	2547	2927	2927		
DLLLTSSYLSDSGSTGEHTK	20	Unmodified	_DLLLTSSYLSDSGSTGEHTK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1056.01058	2110.00661	0.40197	0.00042448	3.8829	0.0041004	4.2849	0.0045249	1056.51721976839	11.944	0.17735	11.944	11.864	12.041	0	57	91	1.28506705146927	0.0594045845370281	1.28506705146927	518.068769483746	0	23.9486803257498						831	21	3	NaN	NaN	NaN	7.6345E-16	1	33470	146.75	38.34	1	291870			2928	576	2498	2547	2928	2928		
DLLPCFPEGLVK	12	Unmodified	_DLLPCFPEGLVK_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.368138	1386.72172	0.60059	0.00041703	1.6042	0.0011139	2.2048	0.0015309	694.369163042501	17.344	0.25715	17.344	17.202	17.459	0	417	58	1.04580932352505	0.0381987855157915	1.04580932352505	423.04790382897	0	15.452067387197						684	30	3	NaN	NaN	NaN	0.0074455	1	15052	62.271	52.757	1	149510			2929	1968	2499	2548	2929	2929		
DLLPSDMAVALLEAQAGTGHIIDPATSAR	29	Unmodified	_DLLPSDMAVALLEAQAGTGHIIDPATSAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	978.506084	2932.49642	0.96867	0.00094785	-0.75831	-0.00074201	0.21036	0.00020584	978.840232138082	19.96	0.026617	19.96	19.951	19.978	0	381	58	1.06991323971056	0.038135606006148	1.06991323971056	645.806763499335	0	23.0189059961335						196	4	5	NaN	NaN	NaN	0.00043974	1	38125	29.662	21.174	1	54920			2930	1816	2500	2549	2930	2930		
DLLPYGFAIHHAGMTR	16	Unmodified	_DLLPYGFAIHHAGMTR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.306763	1797.89846	-0.30815	-0.00018498	-0.091517	-5.4938E-05	-0.39967	-0.00023992	600.306899640373	12.077	0.12414	12.077	12.032	12.157	0	660	67	0.882057989648486	0.0447008465529238	0.882057989648486	533.999076654325	0	27.0619517821506						678	15	5	NaN	NaN	NaN	0.00030247	1	27166	85.813	78.256	1	243750			2931	350	2501	2550	2931	2931		
DLLPYGFAIHHAGMTR	16	Unmodified	_DLLPYGFAIHHAGMTR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.956506	1797.89846	1.3419	0.0012077	0.46784	0.00042104	1.8098	0.0016287	900.458659815136	12.077	0.088745	12.077	12.041	12.13	1.7764E-15	183	58	1.20177511391933	0.0378064710753994	1.20177511391933	485.039575154492	0	15.2587904809395						391	11	4	NaN	NaN	NaN	1.6258E-06	1	27168	100.69	94.665	1	88922			2932	350	2501	2550	2932	2932		
DLLQADQLGSLK	12	Unmodified	_DLLQADQLGSLK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.858992	1299.70343	2.058	0.0013394	-1.4305	-0.00093103	0.62751	0.00040842	650.856855231849	12.919	0.25716	12.919	12.76	13.017	0	504	58	0.987393073566096	0.0383521190755848	0.987393073566096	399.68142407059	0	15.5243438288394						494	30	4	NaN	NaN	NaN	0.00070832	1	12348	75.474	46.165	1	120200			2933	2369	2502	2551	2933	2933		
DLLQFFK	7	Unmodified	_DLLQFFK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.755278	909.496004	-2.3525	-0.0010722	0.82143	0.00037437	-1.5311	-0.00069781	455.755600537783	17.415	0.15959	17.415	17.362	17.521	0	774	43	0.804600385996946	0.0286164420123584	0.804600385996946	327.155091255302	0	11.6356080122371						455	19	4	NaN	NaN	NaN	0.019864	1	2501	64.547	3.0529	1	232450			2934	2452	2503	2552	2934	2934		
DLLQNLLK	8	Unmodified	_DLLQNLLK_			0	0	0	Q00535	Q00535	Q00535	CDK5	Cyclin-dependent-like kinase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.792392	955.570232	-0.8156	-0.00039051	-2.5212	-0.0012071	-3.3368	-0.0015976	478.791115004479	16.555	0.1596	16.555	16.493	16.652	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	351.780547516793	0	7.44304344937342						267	19	3	NaN	NaN	NaN	0.0083818	1	3347	49.058	8.8553	1	82025			2935	1501	2504	2553	2935	2935		
DLLQQMEEGLK	11	Unmodified	_DLLQQMEEGLK_			0	0	0	Q9NS86	Q9NS86	Q9NS86	LANCL2	LanC-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.331753	1302.64895	0.32364	0.00021112	-2.1675	-0.0014139	-1.8439	-0.0012028	652.330922012343	16.599	0.13301	16.599	16.546	16.679	0	549	37	0.957085760909907	0.0242710246218105	0.957085760909907	387.404282969281	0	9.82430130566678						357	16	4	NaN	NaN	NaN	1.6926E-07	1	12425	108.93	43.525	1	91922			2936	3034	2505	2554	2936	2936		
DLLQQVPNAHK	11	Unmodified	_DLLQQVPNAHK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.846219	1261.67788	1.333	0.00084226	0.70771	0.00044717	2.0407	0.0012894	631.846956419094	6.8707	0.079782	6.8707	6.8353	6.9151	0	558	28	0.951016745717027	0.0182095678399629	0.951016745717027	385.078838192896	0	7.3732868105501						120	10	3	NaN	NaN	NaN	2.3136E-07	1	11279	83.623	67.166	1	29152			2937	2140	2506	2555	2937	2937		
DLLSHENAATLNDVK	15	Unmodified	_DLLSHENAATLNDVK_			0	0	0	Q8NE86	Q8NE86	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.417933	1638.82131	2.1852	0.0017928	-2.6336	-0.0021607	-0.44837	-0.00036785	820.416564896185	8.7422	0.1154	8.7422	8.6979	8.8133	0	348	34	1.09197348738011	0.0220420155259144	1.09197348738011	441.050647069813	0	8.90282165526912						186	14	2	NaN	NaN	NaN	2.7204E-06	1	22729	104.49	95.738	1	64830			2938	2309	2507	2556	2938	2938		
DLLSQMHHYNAGVK	14	Unmodified	_DLLSQMHHYNAGVK_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.268197	1611.78276	0.16304	8.7757E-05	1.2007	0.00064629	1.3637	0.00073404	538.268689857181	8.5825	0.15079	8.5825	8.4672	8.618	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	528.308789172524	0	12.3271211669912						129	18	3	NaN	NaN	NaN	0.026091	1	21949	23.804	20.068	1	21264			2939	3102	2508	2557	2939	2939		
DLLVENVPYCDAPTQK	16	Unmodified	_DLLVENVPYCDAPTQK_			0	0	0	Q5U5X0	Q5U5X0	Q5U5X0	LYRM7	Complex III assembly factor LYRM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.453659	1860.89276	1.7151	0.0015976	0.35734	0.00033285	2.0725	0.0019304	931.453930276	12.13	0.18624	12.13	12.068	12.254	0	264	85	1.14797626962532	0.0559334697937985	1.14797626962532	463.206152662206	0	22.569044355498						1025	22	5	NaN	NaN	NaN	2.1547E-06	1	28713	93.772	88.073	1	285190			2940	2004	2509	2558	2940	2940		
DLLVGPGVELLLTPR	15	Unmodified	_DLLVGPGVELLLTPR_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.474523	1590.93449	1.099	0.0008753	-0.90168	-0.00071817	0.19728	0.00015713	796.473824686249	19.703	0.097534	19.703	19.658	19.756	0	375	37	1.07392668217569	0.0240806587960416	1.07392668217569	433.870922154066	0	9.72868801131699						246	12	3	NaN	NaN	NaN	2.6191E-06	1	21308	66.619	61.791	1	52617			2941	2449	2510	2559	2941	2941		
DLLVQQASQCLSK	13	Unmodified	_DLLVQQASQCLSK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.38759	1488.76063	2.011	0.0014989	-1.0655	-0.00079421	0.94547	0.00070474	745.38754178171	11.012	0.3015	11.012	10.871	11.172	0	420	49	1.04379886199097	0.0321607366082963	1.04379886199097	421.948825283897	0	13.0007662647297						621	35	5	NaN	NaN	NaN	1.2124E-16	1	18196	184.43	152.38	1	232790			2942	1919	2511	2560	2942	2942		
DLLVTGAYEISDQSGGAGGLR	21	Unmodified	_DLLVTGAYEISDQSGGAGGLR_			0	0	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.02128	2078.02801	0.6326	0.00065792	0.23725	0.00024674	0.86985	0.00090466	1040.52294881083	14.524	0.10641	14.524	14.48	14.586	0	63	61	1.28111162701928	0.0395921875066181	1.28111162701928	516.526138092117	0	15.9630115597294						314	13	4	NaN	NaN	NaN	6.2429E-16	1	32994	110.9	104.38	1	49085			2943	1146	2512	2561	2943	2943		
DLLYFDGLR	9	Unmodified	_DLLYFDGLR_			0	0	0	Q9Y446	Q9Y446	Q9Y446	PKP3	Plakophilin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.292756	1110.57096	-0.69879	-0.00038873	-1.7969	-0.00099958	-2.4956	-0.0013883	556.291627591434	15.943	0.16848	15.943	15.89	16.058	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	360.978830278965	0	9.0639155180499						273	20	3	NaN	NaN	NaN	0.0015875	1	7001	90.308	59.747	1	57847			2944	3403	2513	2562	2944	2944		
DLMACAQTGSGK	12	Unmodified	_DLMACAQTGSGK_			0	0	0	O00571;O15523;Q9NQI0	O00571	O00571	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.77883	1237.54311	1.4164	0.00087783	2.8213	0.0017486	4.2376	0.0026264	619.780507963749	5.381	0.26601	5.381	5.2479	5.5139	0	588	40	0.93076847747433	0.0263428128199913	0.93076847747433	376.959608740448	0	10.6687932112748						503	31	4	NaN	NaN	NaN	8.9848E-06	1	10538	94.66	78.202	1	125880			2945	93	2514	2563	2945	2945		
DLMLMSHLQDNIQHADPPVQILYNR	25	Unmodified	_DLMLMSHLQDNIQHADPPVQILYNR_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	741.123197	2960.46368	-0.66772	-0.00049486	0.81562	0.00060448	0.1479	0.00010962	741.374897074464	16.98	0.088662	16.98	16.945	17.034	0	519	19	0.97729762293174	0.0121187305342272	0.97729762293174	786.501472562016	0	9.75281141292373						137	11	4	NaN	NaN	NaN	0.00065729	1	38159	32.692	28.251	1	24714			2946	21	2515	2564	2946	2946		
DLMPHDLAR	9	Unmodified	_DLMPHDLAR_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.268758	1066.52296	0.99807	0.00053324	3.3615	0.0017959	4.3596	0.0023292	534.270587691222	7.4294	0.32806	7.4294	7.2521	7.5801	-8.8818E-16	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	361.161495257935	0	9.89222542857283						343	38	2	NaN	NaN	NaN	0.045907	1	5874	45.489	17.785	1	240410			2947	1267	2516	2565	2947	2947		
DLNCVPEIADTLGAVAK	17	Unmodified	_DLNCVPEIADTLGAVAK_			0	0	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.973226	1784.89785	-0.89405	-0.00053283	-0.71447	-0.00042581	-1.6085	-0.00095863	596.307355414408	17.176	0.19507	17.176	17.034	17.229	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	546.328675246154	0	9.83306601037123						298	23	3	NaN	NaN	NaN	0.0071233	1	26830	59.67	55.143	1	63617			2948	115	2517	2566	2948	2948		
DLNHVCVISETGK	13	Unmodified	_DLNHVCVISETGK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.364115	1470.71368	1.724	0.0012695	-0.37376	-0.00027523	1.3502	0.00099424	736.364230265594	6.9771	0.2661	6.9771	6.9239	7.19	0	459	43	1.01763759082241	0.0281950841620375	1.01763759082241	411.419787833453	0	11.3989652588572						562	31	5	NaN	NaN	NaN	7.7098E-06	1	17604	112.95	90.907	1	197460			2949	481	2518	2567	2949	2949		
DLNHVCVISETGK	13	Unmodified	_DLNHVCVISETGK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.245169	1470.71368	-0.24433	-0.00012003	2.1814	0.0010716	1.937	0.00095157	491.246271047407	6.986	0.18628	6.986	6.9239	7.1102	0	732	43	0.833184998970724	0.028552837009126	0.833184998970724	505.268187419951	0	17.3152903846332						288	22	3	NaN	NaN	NaN	0.0030334	1	17606	51.454	43.452	1	74541			2950	481	2518	2567	2950	2950		
DLNPDVNVFQR	11	Unmodified	_DLNPDVNVFQR_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.833308	1315.65206	0.42389	0.00027928	-2.2804	-0.0015024	-1.8565	-0.0012231	658.83379815775	11.793	0.11527	11.793	11.722	11.837	0	534	43	0.967195187796614	0.028284867590345	0.967195187796614	391.455718304752	0	11.4478166345692						186	14	3	NaN	NaN	NaN	0.0032303	1	12836	41.796	29.729	1	60372			2951	2454	2519	2568	2951	2951		
DLNPFTPLVGIR	12	Unmodified	_DLNPFTPLVGIR_			0	0	0	Q86U90	Q86U90	Q86U90	YRDC	YrdC domain-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.379894	1340.74524	0.42218	0.00028344	-0.85288	-0.0005726	-0.4307	-0.00028916	671.379327901727	17.752	0.088656	17.752	17.716	17.805	0	570	28	0.942920803299286	0.0182221791516658	0.942920803299286	381.556830536498	0	7.37368069327772						149	11	3	NaN	NaN	NaN	0.0016753	1	13639	63.212	52.961	1	38220			2952	2164	2520	2569	2952	2952		
DLNSDMDSILASLK	14	Unmodified	_DLNSDMDSILASLK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.376888	1520.73922	1.4543	0.0011072	-0.36662	-0.00027914	1.0876	0.0008281	761.376678272946	19.871	0.062069	19.871	19.845	19.907	0	408	88	1.0518390438467	0.0582471616900897	1.0518390438467	425.116655772388	0	23.5414712267834						317	8	4	NaN	NaN	NaN	1.0272E-07	1	19157	157.74	136.65	1	114660			2953	1026	2521	2570	2953	2953		
DLNSQADSLMTSSAFDTSQVK	21	Unmodified	_DLNSQADSLMTSSAFDTSQVK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1123.01808	2244.02161	1.4013	0.0015737	-0.55176	-0.00061963	0.84956	0.00095407	1123.51947127077	14.373	0.11526	14.373	14.329	14.444	0	90	67	1.26329880838669	0.0435872158663981	1.26329880838669	509.09408698641	0	17.5651189714343						555	14	5	NaN	NaN	NaN	1.6004E-16	1	35139	149.14	140.38	1	175600			2954	1703	2522	2571	2954	2954		
DLNSYLEDK	9	Unmodified	_DLNSYLEDK_			0	0	0	O43324	O43324	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.761486	1095.50842	0.14188	7.7856E-05	1.8276	0.0010029	1.9695	0.0010808	548.762579519273	9.5317	0.1596	9.5317	9.4696	9.6292	0	642	37	0.894250814548268	0.0243755060720344	0.894250814548268	362.687565264029	0	9.88614469846539						334	19	3	NaN	NaN	NaN	0.0045893	1	6589	76.605	47.503	1	113680			2955	195	2523	2572	2955	2955		
DLNYCFSGMSDHR	13	Unmodified	_DLNYCFSGMSDHR_			0	0	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.327207	1600.63986	2.1694	0.0017384	1.3831	0.0011083	3.5525	0.0028467	801.329020483631	9.2125	0.38132	9.2125	9.1504	9.5317	0	384	58	1.06790610341098	0.0381408649762871	1.06790610341098	431.41599742743	0	15.4082641291519						1168	44	6	NaN	NaN	NaN	3.8585E-05	1	21592	114.93	102.98	1	663370			2956	931;1278	2524	2573	2956	2956		
DLNYCFSGMSDHR	13	Oxidation (M)	_DLNYCFSGM(Oxidation (M))SDHR_	DLNYCFSGM(1)SDHR	DLNYCFSGM(49)SDHR	0	1	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.885535	1616.63478	0.41697	0.00022512	0.1337	7.2185E-05	0.55067	0.0002973	539.885846563413	6.9771	0.11525	6.9771	6.9328	7.0481	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	523.363208706867	0	11.1010591983339						228	14	4	NaN	NaN	NaN	0.017442	1	22088	48.701	45.822	1	59100			2957	931;1278	2524	2574	2957	2957	323	
DLNYCFSGMSDHR	13	Oxidation (M)	_DLNYCFSGM(Oxidation (M))SDHR_	DLNYCFSGM(1)SDHR	DLNYCFSGM(81)SDHR	0	1	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.324664	1616.63478	2.5932	0.0020987	-1.042	-0.00084334	1.5512	0.0012554	809.32387091998	6.9771	0.15969	6.9771	6.9328	7.0925	0	381	31	1.06991323971056	0.020067214614357	1.06991323971056	432.190167023721	0	8.10612722039593						375	19	5	NaN	NaN	NaN	0.0002252	1	22089	80.623	77.952	1	124360			2958	931;1278	2524	2574	2958	2958	323	
DLPDVQELITQVR	13	Unmodified	_DLPDVQELITQVR_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.414662	1524.81477	0.89396	0.00068246	-0.39689	-0.00030299	0.49707	0.00037947	763.414469523386	17.92	0.1773	17.92	17.832	18.009	0	444	61	1.02770517576159	0.0402508992087349	1.02770517576159	415.352573910565	0	16.2676173895627						649	21	3	NaN	NaN	NaN	0.00044833	1	19277	93.772	81.176	1	210540			2959	3212	2525	2575	2959	2959		
DLPLLLFR	8	Unmodified	_DLPLLLFR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.805303	985.596052	-0.477	-0.00023554	0.3662	0.00018083	-0.11079	-5.4711E-05	493.805509743813	18.763	0.26604	18.763	18.718	18.984	0	684	52	0.86578508874114	0.0346015342671149	0.86578508874114	351.628509634872	0	14.0530093248849						721	31	4	NaN	NaN	NaN	0.00055305	1	3975	100.67	69.612	1	825670			2960	189	2526	2576	2960	2960		
DLPSADSVQYR	11	Unmodified	_DLPSADSVQYR_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.804217	1249.59388	1.0483	0.00065604	-0.69911	-0.0004375	0.34921	0.00021854	625.80336367777	7.5447	0.15072	7.5447	7.4826	7.6334	0	567	58	0.944945209309785	0.0384637307955292	0.944945209309785	382.660456647075	0	15.5760870001322						333	18	2	NaN	NaN	NaN	0.056445	1	10904	30.918	28.759	1	93962			2961	2422	2527	2577	2961	2961		
DLPTVLPPGFTIGAICK	17	Unmodified	_DLPTVLPPGFTIGAICK_			0	0	0	P08397	P08397	P08397	HMBS	Porphobilinogen deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.992223	1797.96989	1.346	0.0012114	2.9218	0.0026296	4.2678	0.003841	900.493107781896	18.639	0.15073	18.639	18.568	18.718	0	270	67	1.14398322290989	0.0439054229632809	1.14398322290989	461.714467896877	0	17.7203376721857						583	18	5	NaN	NaN	NaN	0.042725	1	27177	34.779	29.392	1	138240			2962	582	2528	2578	2962	2962		
DLPVTEAVFSALVTGHAR	18	Unmodified	_DLPVTEAVFSALVTGHAR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.338897	1881.99486	0.38892	0.00024437	-0.49399	-0.00031039	-0.10507	-6.6018E-05	628.338531684451	18.798	0.2926	18.798	18.648	18.94	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	574.325404282779	0	13.4730222710643						836	34	5	NaN	NaN	NaN	0.003461	1	29192	79.235	73.848	1	356850			2963	1055	2529	2579	2963	2963		
DLPVTEAVFSALVTGHAR	18	Unmodified	_DLPVTEAVFSALVTGHAR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.004707	1881.99486	0.68845	0.00064852	0.54724	0.0005155	1.2357	0.001164	942.506674790157	18.807	0.17734	18.807	18.692	18.869	0	111	85	1.24942920585258	0.0555355059558191	1.24942920585258	504.100382072054	0	22.4066074650383						764	21	4	NaN	NaN	NaN	4.7886E-14	1	29195	103.23	93.209	1	187500			2964	1055	2529	2579	2964	2964		
DLQANVEHLVQK	12	Unmodified	_DLQANVEHLVQK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	465.252652	1392.73613	-1.537	-0.00071509	0.059459	2.7664E-05	-1.4775	-0.00068743	465.252563544969	10.498	0.09756	10.498	10.445	10.543	0	804	22	0.78414869089473	0.0143271514943355	0.78414869089473	475.778841345437	0	8.69293747079735						167	12	3	NaN	NaN	NaN	0.062654	1	15245	14.455	5.4781	1	45802			2965	578	2530	2580	2965	2965		
DLQANVEHLVQK	12	Unmodified	_DLQANVEHLVQK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.37534	1392.73613	2.0542	0.0014325	4.2387	0.0029559	6.2928	0.0043885	697.376200371038	10.489	0.22169	10.489	10.365	10.587	0	414	34	1.04781950764076	0.0221089774592802	1.04781950764076	423.842976443725	0	8.94308107850321						384	26	4	NaN	NaN	NaN	2.7581E-05	1	15248	105.94	87.436	1	115940			2966	578	2530	2580	2966	2966		
DLQDELAGNSEQR	13	Unmodified	_DLQDELAGNSEQR_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.842059	1473.66956	1.6685	0.0012311	0.19706	0.0001454	1.8656	0.0013765	737.84216401914	8.0414	0.16863	8.0414	7.9881	8.1567	0	486	58	0.999498404980629	0.0382938495713495	0.999498404980629	404.07875608258	0	15.4814965419623						472	20	4	NaN	NaN	NaN	0.00083019	1	17688	93.162	68.341	1	122790			2967	3321	2531	2581	2967	2967		
DLQEFIPLINQITAK	15	Unmodified	_DLQEFIPLINQITAK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.987995	1741.96144	1.483	0.0012932	-0.57478	-0.0005012	0.90825	0.00079198	871.986962556806	19.995	0.053225	19.995	19.96	20.013	0	354	73	1.08796502040166	0.0480685143957496	1.08796502040166	439.213435164282	0	19.4053457005507						238	7	3	NaN	NaN	NaN	0.00016469	1	25662	68.108	63.014	1	82825			2968	209	2532	2582	2968	2968		
DLQGLTVEHAIDSFR	15	Unmodified	_DLQGLTVEHAIDSFR_			0	0	0	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.624926	1699.85295	-0.9087	-0.0005158	-0.75257	-0.00042718	-1.6613	-0.00094298	567.624246273294	14.914	0.10642	14.914	14.879	14.985	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	510.808651462579	0	9.87653277225701						278	13	4	NaN	NaN	NaN	0.00026746	1	24491	68.108	53.653	1	90575			2969	194	2533	2583	2969	2969		
DLQGLTVEHAIDSFR	15	Unmodified	_DLQGLTVEHAIDSFR_			0	0	0	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.933751	1699.85295	1.1106	0.00094507	1.1808	0.0010048	2.2914	0.0019499	851.436035151696	14.923	0.097541	14.923	14.879	14.976	0	216	34	1.17988115188462	0.0219120107549011	1.17988115188462	476.413284346955	0	8.84764791243055						245	12	4	NaN	NaN	NaN	3.1216E-05	1	24492	111.98	98.804	1	70589			2970	194	2533	2583	2970	2970		
DLQLQCEANVR	11	Unmodified	_DLQLQCEANVR_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.330076	1344.6456	2.0756	0.0013975	0.16895	0.00011376	2.2445	0.0015113	673.330256883396	7.7398	0.12418	7.7398	7.7044	7.8285	0	546	43	0.959108205975751	0.0283044424712918	0.959108205975751	388.095640234144	0	11.4531714502339						215	15	3	NaN	NaN	NaN	0.00055167	1	13733	83.438	61.394	1	47415			2971	2866	2534	2584	2971	2971		
DLQMVNISLR	10	Unmodified	_DLQMVNISLR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.823898	1187.63324	0.63701	0.00037891	-2.017	-0.0011998	-1.38	-0.00082087	594.823238186351	13.779	0.24826	13.779	13.691	13.939	0	618	67	0.910492137470517	0.0446141514271813	0.910492137470517	368.918653635406	0	18.0770288948649						749	29	5	NaN	NaN	NaN	2.4815E-10	1	9095	159.11	125.72	1	430290			2972	2660	2535	2585	2972	2972		
DLQNVNITLR	10	Unmodified	_DLQNVNITLR_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.332944	1184.65134	1.4439	0.00085674	-5.9197	-0.0035123	-4.4757	-0.0026556	593.829864951066	10.782	0.26602	10.782	10.702	10.968	0	603	52	0.920633820089869	0.0344673973700341	0.920633820089869	373.038720373736	0	13.9661106608875						769	31	4	NaN	NaN	NaN	0.00083655	1	9005	102.55	52.585	1	391430			2973	960	2536	2586	2973	2973		
DLQQYQSQAK	10	Unmodified	_DLQQYQSQAK_			0	0	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.798934	1207.58332	2.2422	0.0013561	-0.46427	-0.00028079	1.7779	0.0010753	604.79893697931	4.0509	0.28375	4.0509	3.9356	4.2194	0	603	40	0.920633820089869	0.0263574177216448	0.920633820089869	372.957137078215	0	10.6776297369563						467	33	4	NaN	NaN	NaN	0.0087365	1	9666	65.933	40.076	1	199010			2974	331	2537	2587	2974	2974		
DLQSNVEHLTEK	12	Unmodified	_DLQSNVEHLTEK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.572051	1411.69432	-1.0982	-0.0005179	-1.2105	-0.00057082	-2.3087	-0.0010887	471.571532076438	8.6891	0.22191	8.6891	8.6357	8.8576	0	819	31	0.773912161060781	0.0204801911124388	0.773912161060781	469.505968248235	0	12.42462961814						416	26	4	NaN	NaN	NaN	0.029841	1	15810	38.1	28.586	1	170200			2975	1521	2538	2588	2975	2975		
DLQSNVEHLTEK	12	Unmodified	_DLQSNVEHLTEK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.854438	1411.69432	2.3554	0.0016649	0.46184	0.00032645	2.8172	0.0019913	706.854812024018	8.6891	0.31066	8.6891	8.618	8.9287	0	420	55	1.04379886199097	0.0361958137667961	1.04379886199097	422.160896310726	0	14.6392736559806						788	36	5	NaN	NaN	NaN	9.8139E-31	1	15812	248.5	213.17	1	449830			2976	1521	2538	2588	2976	2976		
DLSDGIHVVK	10	Unmodified	_DLSDGIHVVK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.795663	1081.57677	1.214	0.00065774	0.89407	0.0004844	2.1081	0.0011421	541.796168893712	7.1368	0.23055	7.1368	7.0747	7.3053	0	612	88	0.914549654013882	0.0588544444980832	0.914549654013882	370.979653570979	0	23.8738283210589						613	27	3	NaN	NaN	NaN	3.857E-05	1	6250	103.8	81.418	1	226110			2977	1567	2539	2589	2977	2977		
DLSEVSETTESTDVK	15	Unmodified	_DLSEVSETTESTDVK_			0	0	0	P41227	P41227	P41227	NAA10	N-alpha-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.380879	1638.74721	2.138	0.001754	0.37856	0.00031056	2.5166	0.0020646	820.380902495518	7.5181	0.30154	7.5181	7.4738	7.7753	0	369	79	1.07793901817685	0.0521604096474584	1.07793901817685	435.382246155369	0	21.0677189801555						868	35	5	NaN	NaN	NaN	1.7738E-18	1	22720	217.24	179.49	1	364510			2978	1032	2540	2590	2978	2978		
DLSFFGGLLR	10	Unmodified	_DLSFFGGLLR_			0	0	0	Q32P28	Q32P28	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.808574	1123.60259	-0.27088	-0.00015245	0.26347	0.00014828	-0.0074092	-4.1699E-06	562.808810272424	19.268	0.133	19.268	19.224	19.357	0	594	34	0.926715457081489	0.0222962488144068	0.926715457081489	375.737726377874	0	9.04003680122486						322	16	4	NaN	NaN	NaN	3.8987E-07	1	7367	113.14	84.034	1	175610			2979	1928	2541	2591	2979	2979		
DLSHIGDAVVISCAK	15	Unmodified	_DLSHIGDAVVISCAK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.906147	1583.79774	2.2523	0.0017858	0.28587	0.00022667	2.5381	0.0020125	792.906165452791	11.075	0.0798	11.075	11.039	11.119	0	300	34	1.12400150285141	0.0219965339302892	1.12400150285141	454.119015441509	0	8.88703823456467						180	10	3	NaN	NaN	NaN	4.0214E-06	1	21086	87.573	83.045	1	43939			2980	662	2542	2592	2980	2980		
DLSLDDFK	8	Unmodified	_DLSLDDFK_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.73474	951.454927	-0.85917	-0.0004096	-0.66939	-0.00031912	-1.5286	-0.00072872	476.734245275432	12.29	0.13304	12.29	12.219	12.352	0	726	34	0.837263974740672	0.0224328108600214	0.837263974740672	340.212878606262	0	9.11532251257023						273	16	3	NaN	NaN	NaN	0.0063831	1	3270	58.286	45.733	1	108620			2981	898	2543	2593	2981	2981		
DLSLEEIQK	9	Unmodified	_DLSLEEIQK_			0	0	0	P16949;Q93045	P16949	P16949	STMN1;STMN2	Stathmin;Stathmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.787504	1073.56045	1.5445	0.00083061	2.2361	0.0012026	3.7806	0.0020332	537.787799019267	9.8243	0.2926	9.8243	9.7268	10.019	0	651	64	0.888155670855968	0.0426778685344582	0.888155670855968	360.306974369326	0	17.3135568333						998	34	4	NaN	NaN	NaN	0.00011463	1	6043	125.98	53.488	1	577680			2982	732	2544	2594	2982	2982		
DLSLLQIQMR	10	Unmodified	_DLSLLQIQMR_			0	0	0	Q9BXJ9;Q6N069	Q9BXJ9	Q9BXJ9	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.839548	1215.66454	-0.17604	-0.00010718	-1.8273	-0.0011125	-2.0033	-0.0012197	608.838462853888	15.712	0.1596	15.712	15.659	15.819	0	615	40	0.912521036363781	0.0263756909350701	0.912521036363781	369.642813338012	0	10.6842299656164						486	19	4	NaN	NaN	NaN	4.7882E-10	1	9908	125.98	91.2	1	233760			2983	2785	2545	2595	2983	2983		
DLSLLSHGGR	10	Unmodified	_DLSLLSHGGR_			0	0	0	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.78563	1053.55671	1.164	0.00061437	0.34306	0.00018106	1.5071	0.00079543	527.785866389	7.3231	0.21281	7.3231	7.2787	7.4915	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	369.457270618899	0	9.05735479744646						372	25	4	NaN	NaN	NaN	1.5743E-07	1	5561	133.68	123.6	1	113610			2984	1576	2546	2596	2984	2984		
DLSMSEEDQMMR	12	Unmodified	_DLSMSEEDQMMR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.296727	1470.5789	1.4679	0.0010808	0.70331	0.00051785	2.1712	0.0015987	736.297679363894	9.6647	0.088676	9.6647	9.6292	9.7179	0	468	34	1.01159370163332	0.022167054085688	1.01159370163332	408.976654540338	0	8.96190595724522						238	11	4	NaN	NaN	NaN	0.00028168	1	17597	70.389	69.015	1	58435			2985	2149	2547	2597	2985	2985		
DLSQDIHGHLGDIDQDVEVEK	21	Unmodified	_DLSQDIHGHLGDIDQDVEVEK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.043426	2361.10845	0.87666	0.00069085	0.62543	0.00049286	1.5021	0.0011837	788.378184061384	12.174	0.070935	12.174	12.148	12.219	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	586.914418111827	0	14.6526769748596						261	9	4	NaN	NaN	NaN	7.3045E-08	1	36137	94.865	85.734	1	62516			2986	3067	2548	2598	2986	2986		
DLSSHQLNEFLAQTLQR	17	Unmodified	_DLSSHQLNEFLAQTLQR_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.344711	1999.0123	0.71725	0.00047866	-0.61511	-0.00041049	0.10214	6.8161E-05	667.344984387472	16.147	0.29264	16.147	16.041	16.333	0	567	82	0.944945209309785	0.0546817245210852	0.944945209309785	571.63080835976	0	33.0789109067236						948	34	5	NaN	NaN	NaN	3.2787E-10	1	31621	171.2	155.58	1	438260			2987	614	2549	2599	2987	2987		
DLSSHQLNEFLAQTLQR	17	Unmodified	_DLSSHQLNEFLAQTLQR_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.51343	1999.0123	1.5808	0.0015816	-1.2176	-0.0012183	0.36321	0.00036339	1001.01410207464	16.147	0.15077	16.147	16.103	16.253	0	198	61	1.1918274123006	0.0397990191528599	1.1918274123006	480.654066467551	0	16.0506128654282						719	18	4	NaN	NaN	NaN	0.0010483	1	31622	34.338	32.496	1	231900			2988	614	2549	2599	2988	2988		
DLSSLLQAVGR	11	Unmodified	_DLSSLLQAVGR_			0	0	0	Q96QU8	Q96QU8	Q96QU8	XPO6	Exportin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.827495	1157.64044	-0.81808	-0.00047435	-1.058	-0.00061343	-1.876	-0.0010878	579.827091093266	17.583	0.10639	17.583	17.53	17.637	0	633	34	0.900343422309015	0.0223333690758126	0.900343422309015	364.915049047911	0	9.05185984566242						191	13	3	NaN	NaN	NaN	0.0027155	1	8299	69.716	55.721	1	42334			2989	2607	2550	2600	2989	2989		
DLSSVQTLLTK	11	Unmodified	_DLSSVQTLLTK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.84281	1203.67107	1.0616	0.00063998	-2.4396	-0.0014707	-1.378	-0.00083072	602.841616313287	13.877	0.133	13.877	13.824	13.957	0	609	46	0.916577990479294	0.0304208382695857	0.916577990479294	371.327727629078	0	12.324211212305						441	16	4	NaN	NaN	NaN	6.2525E-08	1	9584	159.11	121.39	1	317450			2990	1703	2551	2601	2990	2990		
DLSTVEALQNLK	12	Unmodified	_DLSTVEALQNLK_			0	0	0	Q9BTT0	Q9BTT0	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.864274	1329.714	1.2653	0.00084254	0.56005	0.00037292	1.8254	0.0012155	665.86466664901	13.434	0.1685	13.434	13.389	13.558	0	444	73	1.02770517576159	0.0483411285821531	1.02770517576159	415.900371575841	0	19.5630943717043						725	20	4	NaN	NaN	NaN	1.6627E-07	1	13292	131.22	120.52	1	272740			2991	2737	2552	2602	2991	2991		
DLSYCLSGMYDHR	13	Unmodified	_DLSYCLSGMYDHR_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.565914	1615.67591	-0.16784	-9.0563E-05	-1.2015	-0.00064828	-1.3693	-0.00073884	539.56558786411	11.004	0.2217	11.004	10.95	11.172	0	747	58	0.822982596624503	0.0387691446522459	0.822982596624503	498.664119694742	0	23.4911181216037						768	26	5	NaN	NaN	NaN	6.3393E-07	1	22055	191.24	185.37	1	249490			2992	1217	2553	2603	2992	2992		
DLSYCLSGMYDHR	13	Unmodified	_DLSYCLSGMYDHR_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.845232	1615.67591	2.9017	0.002347	1.1191	0.00090522	4.0208	0.0032522	808.846553475811	11.004	0.18621	11.004	10.959	11.146	0	360	34	1.08395544855938	0.0220572074083873	1.08395544855938	437.864700000775	0	8.91002717645307						548	22	5	NaN	NaN	NaN	8.1447E-05	1	22056	67.548	66.291	1	179190			2993	1217	2553	2603	2993	2993		
DLSYCLSGMYDHR	13	Oxidation (M)	_DLSYCLSGM(Oxidation (M))YDHR_	DLSYCLSGM(1)YDHR	DLSYCLSGM(73)YDHR	0	1	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.84269	1631.67083	2.3531	0.0019221	-0.80857	-0.00066047	1.5446	0.0012617	816.842404779287	8.3697	0.079869	8.3697	8.3342	8.414	0	357	25	1.08596037261705	0.0160360785549387	1.08596037261705	438.638041937821	0	6.47724748993204						181	10	4	NaN	NaN	NaN	0.00042824	1	22529	72.922	66.659	1	41741			2994	1217	2553	2604	2994	2994	436	
DLTCAVITEFAR	12	Unmodified	_DLTCAVITEFAR_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.350477	1394.6864	0.17089	0.00011934	0.024952	1.7425E-05	0.19584	0.00013676	698.350566612772	16.315	0.17733	16.315	16.262	16.44	0	483	64	1.00151498427745	0.0423423350766804	1.00151498427745	405.10724522869	0	17.1272392213277						423	21	4	NaN	NaN	NaN	0.003972	1	15284	53.028	44.051	1	93542			2995	3104	2554	2605	2995	2995		
DLTDGHFENILADNSVNDQTK	21	Unmodified	_DLTDGHFENILADNSVNDQTK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1173.54585	2345.07715	0.75468	0.00088565	-0.57195	-0.00067121	0.18273	0.00021444	1174.04629143883	13.416	0.053191	13.416	13.398	13.451	0	84	31	1.26725910986255	0.0197960867929257	1.26725910986255	510.554589792629	0	7.97546681132769						109	7	3	NaN	NaN	NaN	0.042503	1	36000	29.408	28.465	1	16827			2996	994	2555	2606	2996	2996		
DLTDGHFENILADNSVNDQTK	21	Unmodified	_DLTDGHFENILADNSVNDQTK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.699659	2345.07715	1.0912	0.00085409	0.377	0.00029508	1.4682	0.0011492	783.034175698559	13.425	0.097563	13.425	13.371	13.469	0	513	148	0.981336640919867	0.0988126686784824	0.981336640919867	593.04129513412	0	59.7144655210434						812	12	3	NaN	NaN	NaN	1.0317E-05	1	36001	81.578	75.742	1	178790			2997	994	2555	2606	2997	2997		
DLTDYLMK	8	Unmodified	_DLTDYLMK_			0	0	0	P60709;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.746793	997.479033	-0.094038	-4.6995E-05	-1.9799	-0.00098945	-2.0739	-0.0010364	499.746025395888	13.637	0.31921	13.637	13.549	13.868	0	708	64	0.849494101904619	0.0428024921166378	0.849494101904619	344.955552335067	0	17.3808826645273						1454	37	5	NaN	NaN	NaN	0.00085056	1	4230	113.14	85.431	1	1542300			2998	1310;1436;1444;1955	2556	2607	2998	2998		
DLTDYLMK	8	Oxidation (M)	_DLTDYLM(Oxidation (M))K_	DLTDYLM(1)K	DLTDYLM(89)K	0	1	0	P60709;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.74425	1013.47395	0.49651	0.0002521	-0.71424	-0.00036265	-0.21772	-0.00011055	507.744198151437	10.942	0.30151	10.942	10.853	11.154	0	699	79	0.85560534332665	0.0529825331575728	0.85560534332665	347.362541539546	0	21.5100893400937						1132	35	4	NaN	NaN	NaN	0.019746	1	4584	89.123	78.295	1	932590			2999	1310;1436;1444;1955	2556	2608	2999	2999	462	
DLTLDQAYSYAVENAK	16	Unmodified	_DLTLDQAYSYAVENAK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.936156	1799.85776	1.5322	0.0013805	0.6351	0.00057218	2.1673	0.0019526	900.936780418573	15.304	0.19505	15.304	15.216	15.411	0	195	97	1.19381749893585	0.0637222140008449	1.19381749893585	481.823845694842	0	25.7182376983457						558	23	2	NaN	NaN	NaN	1.6586E-08	1	27208	137.39	30.925	1	266540			3000	818	2557	2609	3000	3000		
DLTQMADELR	10	Unmodified	_DLTQMADELR_			0	0	0	P41227	P41227	P41227	NAA10	N-alpha-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.287345	1190.56014	1.2599	0.00075129	1.1229	0.00066955	2.3828	0.0014208	596.28799932321	12.928	0.14196	12.928	12.848	12.99	0	612	52	0.914549654013882	0.0344721745325131	0.914549654013882	370.552227486713	0	13.9672471617813						315	17	3	NaN	NaN	NaN	0.00058031	1	9171	76.605	33.77	1	80338			3001	1032	2558	2610	3001	3001		
DLTQMADELRR	11	Unmodified	_DLTQMADELRR_			0	0	1	P41227	P41227	P41227	NAA10	N-alpha-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.894359	1346.66125	-1.0135	-0.00045596	-1.7092	-0.00076896	-2.7227	-0.0012249	449.893785750383	11.004	0.09754	11.004	10.977	11.075	0	825	22	0.769815552739974	0.0143411262073633	0.769815552739974	467.239116861545	0	8.70433848741914						149	12	3	NaN	NaN	NaN	0.0050165	1	13798	32.14	26.274	1	35861			3002	1032	2559	2611	3002	3002		
DLTSWVTEMK	10	Unmodified	_DLTSWVTEMK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.294639	1208.57472	0.45905	0.00027786	-1.0019	-0.00060644	-0.54284	-0.00032858	605.294101836059	15.792	0.15963	15.792	15.721	15.881	0	597	52	0.924688525662974	0.0344673973700341	0.924688525662974	374.59626549477	0	13.9629269508692						565	19	4	NaN	NaN	NaN	6.2669E-05	1	9691	122.44	95.979	1	240550			3003	1703	2560	2612	3003	3003		
DLTTAGAVTQCYR	13	Unmodified	_DLTTAGAVTQCYR_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.348465	1454.68238	2.4122	0.0017569	-1.5901	-0.0011582	0.82202	0.00059871	728.34794732747	8.0148	0.37256	8.0148	7.8552	8.2277	0	462	142	1.01562323939346	0.094518026002735	1.01562323939346	410.647584968831	0	38.2165330691173						2526	43	6	NaN	NaN	NaN	3.8269E-08	1	17092	152.17	129.12	1	1232900			3004	1528	2561	2613	3004	3004		
DLTTGYDDSQPDKK	14	Unmodified	_DLTTGYDDSQPDKK_			0	0	1	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.865199	1581.71585	2.852	0.0022584	-1.1162	-0.0008839	1.7357	0.0013745	791.864566537134	4.3169	0.079741	4.3169	4.2904	4.3701	0	393	25	1.0618830335572	0.0160648436588446	1.0618830335572	429.026815457096	0	6.4905912402441						120	10	3	NaN	NaN	NaN	6.4885E-07	1	21017	126.21	115.96	1	24193			3005	2532	2562	2614	3005	3005		
DLVDYITTHYK	11	Unmodified	_DLVDYITTHYK_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.345717	1366.67688	1.4345	0.00098171	2.2262	0.0015235	3.6607	0.0025052	684.34693403338	13.948	0.266	13.948	13.85	14.116	0	447	64	1.02569221487577	0.0423014022048924	1.02569221487577	414.97025449221	0	17.1141238899502						587	31	4	NaN	NaN	NaN	8.0391E-07	1	14392	104.39	49.958	1	222610			3006	335	2563	2615	3006	3006		
DLVEAVAHILGIR	13	Unmodified	_DLVEAVAHILGIR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.276909	1404.8089	-2.825	-0.0013257	2.3299	0.0010934	-0.49516	-0.00023237	469.277763727518	20.182	0.04435	20.182	20.173	20.217	0	783	19	0.798467866007927	0.0122676008720245	0.798467866007927	484.426055638268	0	7.44268586823807						46	6	3	NaN	NaN	NaN	0.033649	1	15624	28.647	25.768	1	38507			3007	1127	2564	2616	3007	3007		
DLVEAVAHILGIR	13	Unmodified	_DLVEAVAHILGIR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.411726	1404.8089	1.1063	0.00077816	0.94392	0.00066396	2.0502	0.0014421	703.412905503108	20.182	0.070947	20.182	20.164	20.235	0	426	34	1.03977710643793	0.0221242386339204	1.03977710643793	420.554304670781	0	8.9484984209106						171	9	4	NaN	NaN	NaN	2.8726E-05	1	15626	106.35	100.86	1	241700			3008	1127	2564	2616	3008	3008		
DLVHLSHNMLHGDGTNR	17	Unmodified	_DLVHLSHNMLHGDGTNR_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.311235	1914.91188	2.242	0.0014333	-2.4084	-0.0015397	-0.1664	-0.00010638	639.309296328756	7.6956	0.088755	7.6956	7.6777	7.7664	0	588	22	0.93076847747433	0.0141845894763903	0.93076847747433	563.22513410368	0	8.58335612280757						116	11	3	NaN	NaN	NaN	0.027602	1	29949	31.722	29.175	1	26313			3009	826	2565	2617	3009	3009		
DLVHTEGQLQNEEIVAHDGSATYLR	25	Unmodified	_DLVHTEGQLQNEEIVAHDGSATYLR_			0	0	0	Q9Y547	Q9Y547	Q9Y547	HSPB11	Intraflagellar transport protein 25 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	699.595326	2794.3522	0.93762	0.00065595	0.0023528	1.646E-06	0.93997	0.0006576	699.845780806483	11.438	0.06208	11.438	11.412	11.474	0	519	43	0.97729762293174	0.028292695105214	0.97729762293174	786.719966153132	0	22.775485802148						274	8	4	NaN	NaN	NaN	0.0033464	1	37883	52.149	50.723	1	61934			3010	3423	2566	2618	3010	3010		
DLVPDLSNFYAQYK	14	Unmodified	_DLVPDLSNFYAQYK_			0	0	0	P21912	P21912	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.914495	1671.81444	1.3282	0.0011116	0.75819	0.00063454	2.0864	0.0017461	837.416756798243	17.3	0.18622	17.3	17.202	17.388	0	360	70	1.08395544855938	0.0461259947447743	1.08395544855938	437.739693962412	0	18.6273142961033						964	22	4	NaN	NaN	NaN	7.1164E-06	1	23662	115.41	91.608	1	340920			3011	795	2567	2619	3011	3011		
DLVPNHLSYYLYNHVAMWPEQSDK	24	Unmodified	_DLVPNHLSYYLYNHVAMWPEQSDK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	973.797198	2918.36976	1.2471	0.0012144	0.90208	0.00087844	2.1492	0.0020929	974.467033551636	16.617	0.079808	16.617	16.581	16.661	0	426	37	1.03977710643793	0.0241305373401517	1.03977710643793	627.630731463529	0	14.5656859606107						200	10	4	NaN	NaN	NaN	0.015939	1	38100	12.066	11.743	1	31095			3012	3161	2568	2620	3012	3012		
DLVQDPSLLGGTISAYK	17	Unmodified	_DLVQDPSLLGGTISAYK_			0	0	0	Q9NQX3	Q9NQX3	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.972541	1775.93053	1.8752	0.001667	-7.609	-0.0067642	-5.7338	-0.0050972	889.466704732528	15.313	0.18633	15.313	15.278	15.464	0	285	46	1.13399579921816	0.0299664000670858	1.13399579921816	457.727025751635	0	12.0956631273658						379	22	3	NaN	NaN	NaN	0.00013618	1	26573	63.79	53.54	1	93739			3013	3006	2569	2621	3013	3013		
DLVQLTHYHDPEMDFFENMK	20	Unmodified	_DLVQLTHYHDPEMDFFENMK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.043604	2508.10898	0.53638	0.00044897	0.57576	0.00048194	1.1121	0.00093091	837.378593904033	16.307	0.088676	16.307	16.262	16.351	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	615.959956224624	0	12.1659480326117						199	11	4	NaN	NaN	NaN	0.019877	1	36868	32.6	25.463	1	34488			3014	351	2570	2622	3014	3014		
DLVSSLTSGLLTIGDR	16	Unmodified	_DLVSSLTSGLLTIGDR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.951609	1645.88867	1.6204	0.0013352	-2.484	-0.0020467	-0.8636	-0.00071156	823.950210479298	20.111	0.08866	20.111	20.066	20.155	0	360	58	1.08395544855938	0.0380830760737314	1.08395544855938	437.796382450935	0	15.3812898489895						313	11	5	NaN	NaN	NaN	2.1471E-24	1	22926	165.72	153.14	1	168620			3015	1235	2571	2623	3015	3015		
DLYANTVLSGGTTMYPGIADR	21	Unmodified	_DLYANTVLSGGTTMYPGIADR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1108.03862	2214.06268	0.87859	0.00097351	-1.6553	-0.0018342	-0.77674	-0.00086066	1108.03549537619	15.978	0.37246	15.978	15.872	16.245	0	90	100	1.26329880838669	0.0654032681047179	1.26329880838669	509.136479907662	0	26.3589179980453						1191	43	4	NaN	NaN	NaN	1.5143E-11	1	34841	135.15	129.25	1	311460			3016	1310;1436	2572	2624	3016	3016		
DLYANTVLSGGTTMYPGIADR	21	Unmodified	_DLYANTVLSGGTTMYPGIADR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	739.028171	2214.06268	1.353	0.00099989	-1.7318	-0.0012798	-0.37881	-0.00027995	739.361415745296	15.535	0.2128	15.535	15.491	15.704	0	546	136	0.959108205975751	0.0909472963310931	0.959108205975751	579.810083056923	0	54.9804069144488						2001	25	7	NaN	NaN	NaN	5.9818E-08	1	34842	141.36	137.72	1	818240			3017	1310;1436	2572	2624	3017	3017		
DLYANTVLSGGTTMYPGIADR	21	Unmodified	_DLYANTVLSGGTTMYPGIADR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1108.03862	2214.06268	2.0675	0.0022909	-0.086338	-9.5666E-05	1.9812	0.0021952	1108.54023002168	15.535	0.68292	15.535	15.429	16.111	0	93	199	1.26131825079847	0.131031364105045	1.26131825079847	508.338267797474	0	52.8084459367275						8250	78	7	NaN	NaN	NaN	7.5634E-73	1	34843	259.02	237.66	1	9002200			3018	1310;1436	2572	2624	3018	3018		
DLYANTVLSGGTTMYPGIADR	21	Oxidation (M)	_DLYANTVLSGGTTM(Oxidation (M))YPGIADR_	DLYANTVLSGGTTM(1)YPGIADR	DLYANTVLSGGTTM(150)YPGIADR	0	1	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.359809	2230.0576	0.60061	0.00044707	-0.25402	-0.00018908	0.34659	0.00025799	744.69387957581	14.081	0.19507	14.081	14.036	14.232	0	579	76	0.936845902828289	0.05061719731732	0.936845902828289	566.326529478105	0	30.5982676575576						945	23	6	NaN	NaN	NaN	5.2738E-16	1	34990	153.56	142.59	1	253610			3019	1310;1436	2572	2625	3019	3019	463	
DLYANTVLSGGTTMYPGIADR	21	Oxidation (M)	_DLYANTVLSGGTTM(Oxidation (M))YPGIADR_	DLYANTVLSGGTTM(1)YPGIADR	DLYANTVLSGGTTM(98)YPGIADR	0	1	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1116.03608	2230.0576	0.9	0.0010044	0.16279	0.00018168	1.0628	0.0011861	1116.53808180015	13.93	0.053186	13.93	13.903	13.957	0	60	40	1.28308947459206	0.0257190637601958	1.28308947459206	517.089407068548	0	10.3648698656389						143	7	3	NaN	NaN	NaN	3.4443E-08	1	34991	97.933	89.565	1	27225			3020	1310;1436	2572	2625	3020	3020	463	
DLYANTVLSGGTTMYPGIADR	21	Oxidation (M)	_DLYANTVLSGGTTM(Oxidation (M))YPGIADR_	DLYANTVLSGGTTM(1)YPGIADR	DLYANTVLSGGTTM(240)YPGIADR	0	1	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1116.03608	2230.0576	1.6778	0.0018725	-0.090123	-0.00010058	1.5877	0.0017719	1116.53785785362	14.081	0.31035	14.081	14.01	14.32	0	93	151	1.26131825079847	0.0991435650068591	1.26131825079847	508.315530886709	0	39.9551927902094						3446	36	6	NaN	NaN	NaN	2.7057E-47	1	34992	235.69	224.72	1	2027800			3021	1310;1436	2572	2625	3021	3021	463	
DLYEDELVPLFEK	13	Unmodified	_DLYEDELVPLFEK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.403429	1608.79231	1.9624	0.0015805	0.18571	0.00014957	2.1481	0.0017301	805.40394934238	18.364	0.20397	18.364	18.293	18.497	0	393	79	1.0618830335572	0.0521891837070347	1.0618830335572	428.964134165796	0	21.0826308493815						1209	24	4	NaN	NaN	NaN	6.9462E-17	1	21871	192.14	163.49	1	1003300			3022	196	2573	2626	3022	3022		
DLYEPSHGAK	10	Unmodified	_DLYEPSHGAK_			0	0	0	O43252	O43252	O43252	PAPSS1	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.769645	1115.52474	1.5555	0.00086915	2.9737	0.0016616	4.5292	0.0025308	558.770911578121	3.2794	0.33707	3.2794	3.1286	3.4657	0	657	31	0.884090832094921	0.0203241961529822	0.884090832094921	358.486973952298	0	8.24118892810014						415	39	3	NaN	NaN	NaN	0.0089894	1	7140	48.157	0	1	84845			3023	192	2574	2627	3023	3023		
DLYIDRPLPYLIGSK	15	Unmodified	_DLYIDRPLPYLIGSK_			0	0	1	Q641Q2;Q9Y4E1	Q641Q2	Q641Q2	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.32945	1761.96652	-0.86319	-0.00050784	-1.3117	-0.00077174	-2.1749	-0.0012796	588.328594891931	15.579	0.06201	15.579	15.553	15.615	0	732	55	0.833184998970724	0.036731215006067	0.833184998970724	504.489945224947	0	22.2405932288126						201	8	2	NaN	NaN	NaN	0.0048481	1	26207	27.357	23.111	1	44578			3024	2016	2575	2628	3024	3024		
DLYILWK	7	Unmodified	_DLYILWK_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.770929	949.527304	-1.6282	-0.00077467	-0.92618	-0.00044065	-2.5544	-0.0012153	475.770615109975	15.739	0.14188	15.739	15.695	15.837	0	759	31	0.814815566123307	0.0204260995124381	0.814815566123307	331.10079103189	0	8.30015771353203						255	17	3	NaN	NaN	NaN	0.016696	1	3244	49.058	20.743	1	78047			3025	3109	2576	2629	3025	3025		
DLYNQDDNHQELGSFHIR	18	Unmodified	_DLYNQDDNHQELGSFHIR_			0	0	0	Q9H269	Q9H269	Q9H269	VPS16	Vacuolar protein sorting-associated protein 16 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	551.005616	2199.99336	0.032735	1.8037E-05	-0.59672	-0.00032879	-0.56398	-0.00031076	551.255841469462	9.8332	0.070904	9.8332	9.7889	9.8598	0	711	19	0.847456455381371	0.0122284278950673	0.847456455381371	683.109522748505	0	9.85697316991309						93	9	3	NaN	NaN	NaN	0.0045077	1	34673	33.526	32.158	1	19620			3026	2862	2577	2630	3026	3026		
DMAAAGLHSNVR	12	Unmodified	_DMAAAGLHSNVR_			0	0	0	Q9UJX3	Q9UJX3	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.306403	1240.59825	2.5044	0.001556	-1.2315	-0.00076516	1.2729	0.00079084	621.305726239386	4.4233	0.097526	4.4233	4.3879	4.4854	0	528	28	0.971237000454584	0.0181869004475753	0.971237000454584	393.3386208012	0	7.36546315199047						162	12	4	NaN	NaN	NaN	0.051137	1	10632	43.168	37.672	1	45627			3027	3253	2578	2631	3027	3027		
DMAAPGTSSVPAPTAGNAEK	20	Unmodified	_DMAAPGTSSVPAPTAGNAEK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.443822	1870.87309	2.7299	0.0025564	-2.445	-0.0022897	0.28485	0.00026675	936.441916704945	7.19	0.22168	7.19	7.0747	7.2964	0	315	67	1.11400032671325	0.0440021704183331	1.11400032671325	449.479193076196	0	17.7540881981489						1122	26	5	NaN	NaN	NaN	1.0377E-10	1	28956	112.68	106.16	1	315450			3028	2110	2579	2632	3028	3028		
DMAGAQAAAVALNEEFLR	18	Unmodified	_DMAGAQAAAVALNEEFLR_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.964725	1875.9149	1.0299	0.00096706	1.3933	0.0013083	2.4232	0.0022753	939.466678340667	17.38	0.19508	17.38	17.3	17.495	0	252	43	1.15595906938629	0.027935963941738	1.15595906938629	466.399554710335	0	11.2714381398885						413	23	4	NaN	NaN	NaN	4.319E-10	1	29063	117.03	102.06	1	80565			3029	1722	2580	2633	3029	3029		
DMAIATGGAVFGEEGLTLNLEDVQPHDLGK	30	Unmodified	_DMAIATGGAVFGEEGLTLNLEDVQPHDLGK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1033.1764	3096.50738	2.0385	0.0021062	0.34646	0.00035796	2.385	0.0024641	1033.51116277778	18.39	0.25719	18.39	18.328	18.585	0	348	169	1.09197348738011	0.112160207395323	1.09197348738011	658.957609421942	0	67.6837148444096						2138	30	5	NaN	NaN	NaN	1.8605E-10	1	38352	118.07	115.82	1	353530			3030	635	2581	2634	3030	3030		
DMAQLPETEIAPAK	14	Unmodified	_DMAQLPETEIAPAK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.381974	1512.74939	2.1368	0.0016183	-0.35663	-0.00027011	1.7801	0.0013482	757.381974587114	10.613	0.40789	10.613	10.356	10.764	0	426	70	1.03977710643793	0.0462342637140174	1.03977710643793	420.261661630203	0	18.6871670595508						1012	47	6	NaN	NaN	NaN	0.00027416	1	18890	74.524	66.967	1	362090			3031	869	2582	2635	3031	3031		
DMDEPSPVPNVEEVTLPK	18	Unmodified	_DMDEPSPVPNVEEVTLPK_			0	0	0	Q8TAQ2	Q8TAQ2	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.482613	1994.95067	1.9405	0.0019375	-2.2158	-0.0022124	-0.27532	-0.00027491	998.482432969354	14.356	0.20391	14.356	14.205	14.409	0	219	64	1.17788915118882	0.0418205460286183	1.17788915118882	475.0395547018	0	16.8661147297013						603	24	3	NaN	NaN	NaN	0.0031981	1	31539	35.246	31.174	1	128950			3032	2333	2583	2636	3032	3032		
DMDLVEVNEAFAPQYLAVER	20	Unmodified	_DMDLVEVNEAFAPQYLAVER_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.05955	2308.10455	-0.26954	-0.00031134	0.65796	0.00075999	0.38842	0.00044865	1155.56177699875	18.532	0.070949	18.532	18.488	18.559	0	69	37	1.27715511956461	0.0237455493197651	1.27715511956461	514.590062316738	0	9.56753296214225						299	9	4	NaN	NaN	NaN	6.3791E-16	1	35701	80.026	74.449	1	54760			3033	1056	2584	2637	3033	3033		
DMDLWEQQEEER	12	Unmodified	_DMDLWEQQEEER_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.335752	1606.65695	2.6525	0.0021335	0.77042	0.00061967	3.4229	0.0027532	804.336634037192	10.773	0.17734	10.773	10.72	10.897	0	369	64	1.07793901817685	0.0421266461589811	1.07793901817685	435.455136381468	0	17.0179055949558						867	21	4	NaN	NaN	NaN	0.0031864	1	21794	77.358	65.34	1	306320			3034	1728	2585	2638	3034	3034		
DMEDPTPVPNIEEVVLPK	18	Unmodified	_DMEDPTPVPNIEEVVLPK_			0	0	0	Q92922	Q92922	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.50863	2021.00271	0.93231	0.00094304	-0.56305	-0.00056953	0.36925	0.0003735	1012.01014698647	17.353	0.17737	17.353	17.255	17.433	0	186	64	1.1997861197946	0.0417861035477585	1.1997861197946	483.82743536346	0	16.850722791163						634	21	3	NaN	NaN	NaN	6.0013E-05	1	32005	70.806	62.807	1	125770			3035	2445	2586	2639	3035	3035		
DMEESIR	7	Unmodified	_DMEESIR_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.197467	878.380382	-1.0089	-0.0004441	2.0641	0.00090861	1.0552	0.00046451	440.198298733478	4.3968	0.133	4.3968	4.3524	4.4854	0	771	31	0.806643990516186	0.0204289410933094	0.806643990516186	328.158796669369	0	8.31089899042064						208	16	3	NaN	NaN	NaN	0.011409	1	1984	73.637	52.979	1	79403			3036	694	2587	2640	3036	3036		
DMELPTEK	8	Unmodified	_DMELPTEK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.7286	961.442648	-0.19523	-9.4048E-05	2.4618	0.0011859	2.2666	0.0010919	481.729496089873	6.8441	0.16847	6.8441	6.7555	6.9239	0	735	40	0.831145085810763	0.0265225632029411	0.831145085810763	337.676554233823	0	10.7755527942291						220	20	2	NaN	NaN	NaN	0.0033717	1	3466	60.589	50.51	1	69618			3037	869	2588	2641	3037	3037		
DMESDYSGQGVDQLQR	16	Unmodified	_DMESDYSGQGVDQLQR_			0	0	0	P04818	P04818	P04818	TYMS	Thymidylate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.394329	1826.77411	2.6442	0.0024178	-1.4524	-0.0013281	1.1918	0.0010898	914.393392394743	8.5027	0.10641	8.5027	8.4584	8.5648	0	342	49	1.09598084995137	0.0320589101536728	1.09598084995137	442.287218770058	0	12.9374944911642						418	13	5	NaN	NaN	NaN	8.7404E-25	1	27886	208.35	206.21	1	120790			3038	517	2589	2642	3038	3038		
DMEYFFGENWEEQVQCPK	18	Unmodified	_DMEYFFGENWEEQVQCPK_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1168.48536	2334.95617	0.39909	0.00046633	1.2618	0.0014744	1.6609	0.0019408	1168.98827005755	17.433	0.062056	17.433	17.406	17.468	0	72	49	1.27517645957152	0.0316737446597188	1.27517645957152	513.75745471828	0	12.7610749991745						266	8	3	NaN	NaN	NaN	8.875E-05	1	35934	45.183	43.913	1	50901			3039	910	2590	2643	3039	3039		
DMFAFMGSLDTK	12	Unmodified	_DMFAFMGSLDTK_			0	0	0	Q9NWV8	Q9NWV8	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.807056	1361.59956	-0.086576	-5.9028E-05	1.6421	0.0011196	1.5555	0.0010606	681.807560583804	17.929	0.079779	17.929	17.894	17.974	0	543	28	0.961130371139249	0.0181969696158962	0.961130371139249	388.864616178902	0	7.36232858495265						177	10	3	NaN	NaN	NaN	0.0021973	1	14244	47.334	40.184	1	40498			3040	3088	2591	2644	3040	3040		
DMFDPHGWSEDSYYEALAK	19	Unmodified	_DMFDPHGWSEDSYYEALAK_			0	0	0	Q9UHR5	Q9UHR5	Q9UHR5	SAP30BP	SAP30-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.321243	2259.9419	0.27592	0.00020813	-0.87232	-0.00065801	-0.5964	-0.00044988	754.654908424015	15.482	0.071059	15.482	15.437	15.508	0	612	28	0.914549654013882	0.0182550299424538	0.914549654013882	552.803145503343	0	11.0343248495648						129	9	3	NaN	NaN	NaN	0.011945	1	35274	22.039	21.604	1	22804			3041	3222	2592	2645	3041	3041		
DMFEEALR	8	Unmodified	_DMFEEALR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.734217	1009.45388	-0.18156	-9.182E-05	0.72075	0.00036451	0.53919	0.00027269	505.734495649787	11.438	0.088684	11.438	11.394	11.483	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	357.295542658042	0	8.255185391135						200	11	3	NaN	NaN	NaN	0.011146	1	4492	53.679	39.144	1	48968			3042	950	2593	2646	3042	3042		
DMFQETMEAMR	11	Unmodified	_DMFQETMEAMR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.785798	1387.55704	0.027669	1.9224E-05	-0.079819	-5.5457E-05	-0.05215	-3.6233E-05	694.786215484369	14.834	0.133	14.834	14.781	14.914	1.7764E-15	531	52	0.969216233931596	0.0343482903066424	0.969216233931596	392.062354859346	0	13.8943933371685						561	16	5	NaN	NaN	NaN	1.7834E-11	1	15061	175.07	165.55	1	253050			3043	972	2594	2647	3043	3043		
DMGEDLECLCQIMR	14	Unmodified	_DMGEDLECLCQIMR_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.3699	1768.72525	1.7037	0.0015084	-0.26346	-0.00023326	1.4403	0.0012752	885.370856634685	18.151	0.079781	18.151	18.115	18.195	0	342	34	1.09598084995137	0.0220389790328746	1.09598084995137	442.39657517209	0	8.89611241370307						287	10	5	NaN	NaN	NaN	5.8988E-17	1	26369	151.66	149.53	1	74560			3044	1457	2595	2648	3044	3044		
DMGEMVTQGQTDAQYMFLR	19	Unmodified	_DMGEMVTQGQTDAQYMFLR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.98976	2219.96496	0.2151	0.00023897	1.9834	0.0022036	2.1985	0.0024425	1111.49307575403	17.007	0.10639	17.007	16.954	17.06	0	129	46	1.23753038177212	0.0297572623085223	1.23753038177212	498.742971524047	0	11.9926150070922						352	13	4	NaN	NaN	NaN	0.0017132	1	34888	57.042	56.523	1	71415			3045	1511	2596	2649	3045	3045		
DMGGYSTTTDFIK	13	Unmodified	_DMGGYSTTTDFIK_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.324125	1434.6337	1.927	0.0013842	1.0287	0.00073891	2.9556	0.0021231	718.324525877924	11.146	0.097535	11.146	11.092	11.19	0	438	40	1.03173026378327	0.0261648835876145	1.03173026378327	417.215054543196	0	10.5806563171788						339	12	4	NaN	NaN	NaN	0.00045979	1	16520	88.24	84.895	1	149660			3046	239	2597	2650	3046	3046		
DMGIQDDELSLR	12	Unmodified	_DMGIQDDELSLR_			0	0	0	Q96S82	Q96S82	Q96S82	UBL7	Ubiquitin-like protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.327199	1390.63984	0.51386	0.00035781	3.0203	0.0021031	3.5341	0.0024609	696.329946890709	12.032	0.097562	12.032	11.988	12.086	0	477	28	1.0055473068722	0.0181441995838212	1.0055473068722	406.749904038826	0	7.33943732845046						189	12	3	NaN	NaN	NaN	0.00014971	1	15158	71.066	60.364	1	58979			3047	2619	2598	2651	3047	3047		
DMGLVTPEAASLGTVIK	17	Unmodified	_DMGLVTPEAASLGTVIK_			0	0	0	Q9NYV4	Q9NYV4	Q9NYV4	CDK12	Cyclin-dependent kinase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.458213	1700.90187	0.67755	0.00057691	2.7058	0.0023039	3.3834	0.0028808	851.461008931902	15.916	0.0887	15.916	15.872	15.961	0	264	16	1.14797626962532	0.00998055810338228	1.14797626962532	463.528389870524	0	4.02993698570083						94	11	2	NaN	NaN	NaN	0.0021876	1	24533	47.915	43.387	1	21731			3048	3122	2599	2652	3048	3048		
DMGYGNWISK	10	Unmodified	_DMGYGNWISK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.766049	1169.51754	1.1613	0.00068026	0.25594	0.00014992	1.4173	0.00083018	585.766296561869	11.066	0.14188	11.066	11.004	11.146	0	606	37	0.918606045818476	0.0243383549190614	0.918606045818476	372.272485429576	0	9.86331400520368						387	17	4	NaN	NaN	NaN	0.028932	1	8593	43.168	37.86	1	125830			3049	1273	2600	2653	3049	3049		
DMGYHVSMMADSTSR	15	Unmodified	_DMGYHVSMMADSTSR_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.347282	1686.68001	2.5607	0.0021621	1.5951	0.0013469	4.1558	0.003509	844.347635347246	8.3253	0.079862	8.3253	8.2898	8.3697	0	354	31	1.08796502040166	0.0200423371753535	1.08796502040166	439.327065107874	0	8.0932208334234						166	10	3	NaN	NaN	NaN	0.0059218	1	24091	35.45	35.16	1	44795			3050	1006	2601	2654	3050	3050		
DMIHIADTK	9	Unmodified	_DMIHIADTK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.263142	1042.51173	0.90491	0.0004726	1.2228	0.00063863	2.1277	0.0011112	522.263774659001	6.3919	0.2394	6.3919	6.2767	6.5161	0	666	46	0.877991458330206	0.0305095775467987	0.877991458330206	356.317913545946	0	12.3817935943462						365	28	2	NaN	NaN	NaN	0.00058474	1	5279	79.059	54.208	1	174170			3051	3329	2602	2655	3051	3051		
DMILQFISR	9	Unmodified	_DMILQFISR_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.802434	1121.59032	-0.42061	-0.0002363	-2.824	-0.0015866	-3.2446	-0.0018229	561.800915476387	16.564	0.17733	16.564	16.51	16.688	0	660	40	0.882057989648486	0.0264306247374108	0.882057989648486	357.639100457542	0	10.7165571499278						416	21	4	NaN	NaN	NaN	6.536E-05	1	7315	102.46	71.903	1	139300			3052	1167	2603	2656	3052	3052		
DMLEAGILDTYLGK	14	Unmodified	_DMLEAGILDTYLGK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.892174	1537.7698	1.269	0.00097696	0.03161	2.4336E-05	1.3006	0.0010013	769.892480202763	18.231	0.34579	18.231	18.107	18.452	0	408	106	1.0518390438467	0.0702983306915637	1.0518390438467	425.0741836472	0	28.4092948491389						1678	40	6	NaN	NaN	NaN	1.9672E-11	1	19663	153.25	130.35	1	849740			3053	1174	2604	2657	3053	3053		
DMLEAGILDTYLGK	14	Oxidation (M)	_DM(Oxidation (M))LEAGILDTYLGK_	DM(1)LEAGILDTYLGK	DM(56)LEAGILDTYLGK	0	1	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.889632	1553.76471	0.9852	0.00076638	1.1955	0.00092996	2.1807	0.0016963	777.890037400055	16.413	0.24826	16.413	16.298	16.546	0	402	61	1.05585747106793	0.0401565865684175	1.05585747106793	426.658931050863	0	16.2267794370043						962	29	4	NaN	NaN	NaN	0.045453	1	20175	55.578	45.093	1	365160			3054	1174	2604	2658	3054	3054	423	
DMLFQVLALEEPNVR	15	Unmodified	_DMLFQVLALEEPNVR_			0	0	0	P35270	P35270	P35270	SPR	Sepiapterin reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.978312	1772.91311	-0.96864	-0.00057341	1.8741	0.0011094	0.90542	0.00053599	592.314000396322	19.508	0.053174	19.508	19.481	19.534	0	675	16	0.871889544407995	0.0101712685193487	0.871889544407995	527.899947652148	0	6.1583627804207						69	7	3	NaN	NaN	NaN	0.0022235	1	26487	88.734	67.373	1	11165			3055	969	2605	2659	3055	3055		
DMLFQVLALEEPNVR	15	Unmodified	_DMLFQVLALEEPNVR_			0	0	0	P35270	P35270	P35270	SPR	Sepiapterin reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.463829	1772.91311	1.6215	0.001439	-0.62853	-0.0005578	0.99296	0.00088122	887.463573823356	19.508	0.088643	19.508	19.472	19.561	0	309	43	1.11800162319566	0.0280129380012835	1.11800162319566	451.277048574922	0	11.3073145162322						282	11	4	NaN	NaN	NaN	3.9285E-08	1	26488	85.081	65.19	1	71108			3056	969	2605	2659	3056	3056		
DMLLANPHELSLLK	14	Unmodified	_DMLLANPHELSLLK_			0	0	0	Q5TDH0	Q5TDH0	Q5TDH0	DDI2	Protein DDI1 homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.960481	1592.85961	-0.83586	-0.00044464	1.513	0.00080483	0.67709	0.00036019	532.296185875047	14.799	0.079825	14.799	14.755	14.834	1.7764E-15	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	543.143922454262	0	9.8462841720351						183	10	4	NaN	NaN	NaN	0.021333	1	21364	38.584	34.601	1	49485			3057	1999	2606	2660	3057	3057		
DMLLANPHELSLLK	14	Unmodified	_DMLLANPHELSLLK_			0	0	0	Q5TDH0	Q5TDH0	Q5TDH0	DDI2	Protein DDI1 homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.437083	1592.85961	0.73287	0.00058442	1.3223	0.0010544	2.0552	0.0016389	797.438104134883	14.799	0.097583	14.799	14.755	14.852	0	288	28	1.13199748998575	0.0179872594676864	1.13199748998575	457.326995252308	0	7.26685297269						245	12	4	NaN	NaN	NaN	0.00012116	1	21365	53.051	48.234	1	62072			3058	1999	2606	2660	3058	3058		
DMLLELEEQLAESR	14	Unmodified	_DMLLELEEQLAESR_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.414002	1674.81345	1.8025	0.0015112	0.59597	0.00049967	2.3985	0.0020109	838.414363330081	19.49	0.09753	19.49	19.454	19.552	0	333	61	1.10198982404297	0.0400736445375593	1.10198982404297	445.016064897617	0	16.1829222095568						276	12	3	NaN	NaN	NaN	1.2639E-05	1	23760	84.999	63.849	1	59861			3059	1927	2607	2661	3059	3059		
DMLLTLHQHLDLSSSEK	17	Unmodified	_DMLLTLHQHLDLSSSEK_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.334935	1965.98298	0.28867	0.00018946	0.73156	0.00048015	1.0202	0.00066961	656.669741239446	12.582	0.15074	12.582	12.547	12.697	0	585	25	0.932794566565362	0.0162053462177963	0.932794566565362	564.345755040329	0	9.80432206058663						139	18	2	NaN	NaN	NaN	0.00012711	1	31038	70.806	70.684	1	41637			3060	3268	2608	2662	3060	3060		
DMLQAASHYR	10	Unmodified	_DMLQAASHYR_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.282397	1190.55024	1.1943	0.00071214	1.6281	0.00097081	2.8224	0.001683	596.283570634194	6.853	0.11527	6.853	6.8175	6.9328	0	552	28	0.955063035883597	0.0182045269808345	0.955063035883597	386.967252605051	0	7.37601134801605						167	14	3	NaN	NaN	NaN	1.6032E-07	1	9166	167.04	155.68	1	43895			3061	2369	2609	2663	3061	3061		
DMMFQLLR	8	Unmodified	_DMMFQLLR_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.26463	1052.51471	-0.91596	-0.00048296	-1.158	-0.00061059	-2.074	-0.0010936	527.264211937365	16.28	0.14186	16.28	16.236	16.377	0	666	37	0.877991458330206	0.0244025785468278	0.877991458330206	356.273782000314	0	9.90214525090323						265	17	3	NaN	NaN	NaN	0.0029331	1	5526	84.699	56.994	1	82209			3062	1500	2610	2664	3062	3062		
DMNHTNSYGIIR	12	Unmodified	_DMNHTNSYGIIR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.835525	1419.6565	1.9499	0.0013861	-1.5103	-0.0010735	0.43968	0.00031254	711.837439248088	6.3831	0.17733	6.3831	6.3121	6.4895	0	492	46	0.995464410099171	0.0302570607134584	0.995464410099171	402.590292337142	0	12.2366995688779						529	21	4	NaN	NaN	NaN	0.0010477	1	16079	58.889	48.639	1	135670			3063	2064	2611	2665	3063	3063		
DMNQGELFDCALLGDR	16	Unmodified	_DMNQGELFDCALLGDR_			0	0	0	Q96JH7	Q96JH7	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.411468	1852.80838	0.89105	0.00082637	8.4505	0.0078371	9.3415	0.0086634	927.418838821836	16.351	0.12413	16.351	16.289	16.413	0	291	31	1.12999890578964	0.0199899698231232	1.12999890578964	455.96701486782	0	8.06617318021023						230	15	3	NaN	NaN	NaN	0.034082	1	28555	33.526	29.544	1	41852			3064	2568	2612	2666	3064	3064		
DMPLLSCLESLR	12	Unmodified	_DMPLLSCLESLR_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.359987	1432.70542	0.38504	0.00027621	0.18983	0.00013618	0.57487	0.00041239	717.359882919316	19.33	0.20392	19.33	19.162	19.366	0	450	43	1.02367897599655	0.0281950841620375	1.02367897599655	413.964567655969	0	11.4017832727287						451	24	3	NaN	NaN	NaN	0.00043237	1	16473	55.754	47.753	1	82206			3065	270	2613	2667	3065	3065		
DMQPSMESDMALVK	14	Unmodified	_DMQPSMESDMALVK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.351502	1580.68845	1.6205	0.0012824	1.2639	0.0010002	2.8844	0.0022826	791.352691592824	11.953	0.27489	11.953	11.882	12.157	1.7764E-15	333	40	1.10198982404297	0.0260388926708219	1.10198982404297	445.233445914968	0	10.5204110407357						760	32	4	NaN	NaN	NaN	0.00018233	1	20981	86.838	77.861	1	176090			3066	869	2614	2668	3066	3066		
DMSGTMGFNEFK	12	Unmodified	_DMSGTMGFNEFK_			0	0	0	P30626	P30626	P30626	SRI	Sorcin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.286488	1362.55842	0.92041	0.00062798	0.10553	7.1998E-05	1.0259	0.00069998	682.286725806842	12.396	0.088661	12.396	12.361	12.449	0	522	49	0.975277694896658	0.032312153640667	0.975277694896658	394.585710207671	0	13.0731115449051						336	11	4	NaN	NaN	NaN	2.5809E-07	1	14269	147.78	122.52	1	116530			3067	915	2615	2669	3067	3067		
DMSTWVFGAER	11	Unmodified	_DMSTWVFGAER_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.795337	1297.57612	0.5556	0.00036102	-0.82851	-0.00053836	-0.27291	-0.00017734	649.795108791907	14.959	0.097614	14.959	14.923	15.021	0	582	31	0.934820374997243	0.0202538779292779	0.934820374997243	378.407331962611	0	8.19859741411506						209	12	3	NaN	NaN	NaN	0.00065075	1	12276	102.55	88.551	1	58759			3068	1826	2616	2670	3068	3068		
DMTGLPHNR	9	Unmodified	_DMTGLPHNR_			0	0	0	P52594	P52594	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.750733	1039.48691	1.8947	0.00098667	2.2839	0.0011894	4.1787	0.002176	520.75205039545	3.7494	0.2571	3.7494	3.6431	3.9002	4.4409E-16	666	22	0.877991458330206	0.0142338480698521	0.877991458330206	356.33142280488	0	5.77678437141623						246	30	3	NaN	NaN	NaN	0.062368	1	5212	26.456	21.549	1	53441			3069	1216	2617	2671	3069	3069		
DMTLPPETNVILTK	14	Unmodified	_DMTLPPETNVILTK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.421099	1570.82764	1.7174	0.0013506	0.75563	0.00059424	2.473	0.0019448	786.422332571262	14.178	0.23054	14.178	14.072	14.302	0	393	70	1.0618830335572	0.0461960076495578	1.0618830335572	429.052618111617	0	18.6654437466152						748	27	3	NaN	NaN	NaN	0.015292	1	20688	39.293	34.464	1	247380			3070	869	2618	2672	3070	3070		
DMTMFVTASK	10	Unmodified	_DMTMFVTASK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.76466	1129.51477	0.65554	0.00037088	-0.84735	-0.0004794	-0.19181	-0.00010852	565.764328492737	11.083	0.1596	11.083	11.021	11.181	0	657	31	0.884090832094921	0.0203241961529822	0.884090832094921	358.432793089255	0	8.23994337453456						294	19	3	NaN	NaN	NaN	0.0010791	1	7507	72.042	47.191	1	74383			3071	1655	2619	2673	3071	3071		
DMTSEQLDDILK	12	Oxidation (M)	_DM(Oxidation (M))TSEQLDDILK_	DM(1)TSEQLDDILK	DM(45)TSEQLDDILK	0	1	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.334689	1422.65483	1.1331	0.00080716	2.9194	0.0020796	4.0525	0.0028867	712.335956025944	12.547	0.11526	12.547	12.511	12.626	0	453	52	1.02166545906632	0.0342439860536077	1.02166545906632	413.178221421037	0	13.8488280350858						414	14	4	NaN	NaN	NaN	0.014818	1	16165	44.598	33.237	1	76274			3072	522	2620	2674	3072	3072	100	
DMVDPVTGDK	10	Unmodified	_DMVDPVTGDK_			0	0	0	Q9Y314	Q9Y314	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.750064	1075.48558	-0.15201	-8.1898E-05	0.68958	0.00037151	0.53756	0.00028961	538.750177496578	6.3919	0.09752	6.3919	6.3565	6.454	0	729	28	0.835224628594324	0.0183541170899648	0.835224628594324	338.826233349149	0	7.44572914535377						128	12	2	NaN	NaN	NaN	0.068771	1	6091	25.857	17.674	1	25257			3073	3363	2621	2675	3073	3073		
DMVGIAQTGSGK	12	Unmodified	_DMVGIAQTGSGK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.289888	1162.56522	1.0763	0.00062674	-1.2011	-0.00069941	-0.1248	-7.267E-05	582.289940012521	6.1791	0.21284	6.1791	6.0727	6.2855	0	621	46	0.908462957275599	0.0304503749625084	0.908462957275599	368.187586308295	0	12.341119656932						502	25	4	NaN	NaN	NaN	0.00010609	1	8406	101.82	91.116	1	169840			3074	2435	2622	2676	3074	3074		
DMVQDLLDFK	10	Unmodified	_DMVQDLLDFK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.302464	1222.59037	0.43248	0.00026481	-1.4022	-0.00085856	-0.96971	-0.00059376	612.301769522741	18.47	0.13307	18.47	18.426	18.559	0	573	46	0.940896116921038	0.0303787174867894	0.940896116921038	381.112713604997	0	12.3049880311085						413	16	4	NaN	NaN	NaN	0.00055869	1	10085	64.064	55.882	1	167620			3075	1696	2623	2677	3075	3075		
DMVTELFDPLVQGEVQHR	18	Unmodified	_DMVTELFDPLVQGEVQHR_			0	0	0	Q9BXV9	Q9BXV9	Q9BXV9	C14orf142	Uncharacterized protein C14orf142	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.017606	2112.03099	-0.76447	-0.00053896	-0.21662	-0.00015272	-0.98109	-0.00069169	705.351796443492	18.683	0.044318	18.683	18.656	18.701	0	666	58	0.877991458330206	0.0386025930625213	0.877991458330206	530.93225619576	0	23.3434638062084						116	6	2	NaN	NaN	NaN	6.3488E-05	1	33484	61.067	58.172	1	25000			3076	2788	2624	2678	3076	3076		
DMVVDIQR	8	Unmodified	_DMVVDIQR_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.250034	974.485516	0.31002	0.00015137	0.22339	0.00010907	0.53341	0.00026044	488.249948252215	8.068	0.10648	8.068	8.0237	8.1302	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	345.893830821553	0	9.93028661228772						197	13	2	NaN	NaN	NaN	0.029851	1	3725	56.014	39.467	1	90498			3077	3332	2625	2679	3077	3077		
DMVVQLIDDFK	11	Unmodified	_DMVVQLIDDFK_			0	0	0	P78362	P78362	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.836671	1321.65879	-0.44803	-0.00029652	0.060848	4.0272E-05	-0.38718	-0.00025625	661.836707967145	19.117	0.079797	19.117	19.082	19.162	0	507	37	0.985374541851584	0.0242274096445863	0.985374541851584	398.794653532283	0	9.80516648729576						189	10	3	NaN	NaN	NaN	0.0020383	1	13031	67.881	62.015	1	46159			3078	1460	2626	2680	3078	3078		
DNAGAATEEFIK	12	Unmodified	_DNAGAATEEFIK_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.304049	1264.59355	1.4321	0.00090698	3.1988	0.0020258	4.631	0.0029328	633.306500866197	8.3342	0.24838	8.3342	8.2277	8.4761	0	570	25	0.942920803299286	0.016200857536437	0.942920803299286	381.791146969372	0	6.55977040604165						276	29	3	NaN	NaN	NaN	0.0045375	1	11346	50.09	35.634	1	71784			3079	615	2627	2681	3079	3079		
DNALLAQLIQDK	12	Unmodified	_DNALLAQLIQDK_			0	0	0	P61764	P61764	P61764	STXBP1	Syntaxin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.372266	1340.72998	0.79399	0.00053306	-0.8012	-0.00053791	-0.0072127	-4.8424E-06	671.371723194057	16.058	0.12415	16.058	16.005	16.129	0	468	31	1.01159370163332	0.0201532590468485	1.01159370163332	409.345652193468	0	8.15510115873218						221	15	3	NaN	NaN	NaN	3.1373E-07	1	13634	143.22	112.3	1	54409			3080	1350	2628	2682	3080	3080		
DNALLSAIEESR	12	Unmodified	_DNALLSAIEESR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.335881	1316.65721	0.83739	0.00055212	-0.48855	-0.00032212	0.34885	0.00023001	659.336084096178	14.533	0.11527	14.533	14.498	14.613	0	519	34	0.97729762293174	0.0222192115744939	0.97729762293174	395.541360630654	0	8.99277453673858						207	14	3	NaN	NaN	NaN	0.0053286	1	12878	52.837	47.687	1	52763			3081	2239	2629	2683	3081	3081		
DNALTLLIK	9	Unmodified	_DNALTLLIK_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.8055	999.596446	-0.81909	-0.00041021	-1.7849	-0.0008939	-2.604	-0.0013041	500.80477487173	15.003	0.14188	15.003	14.959	15.101	0	705	34	0.851531465363931	0.0224078882408908	0.851531465363931	345.772902364115	0	9.09894803428335						321	17	3	NaN	NaN	NaN	0.012397	1	4285	46.447	37.054	1	110710			3082	2886	2630	2684	3082	3082		
DNAMLEYLK	9	Unmodified	_DNAMLEYLK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.7708	1095.52705	0.10844	5.9507E-05	0.70359	0.00038611	0.81203	0.00044562	548.771392200806	12.609	0.25715	12.609	12.502	12.76	0	645	46	0.892219381832517	0.030475726379646	0.892219381832517	361.863591507164	0	12.3602513306514						687	30	3	NaN	NaN	NaN	0.0014723	1	6592	79.059	36.224	1	324230			3083	710	2631	2685	3083	3083		
DNFDEMDTSR	10	Unmodified	_DNFDEMDTSR_			0	0	0	P23258	P23258	P23258	TUBG1	Tubulin gamma-1 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.240592	1228.46663	1.2108	0.00074495	-0.062262	-3.8306E-05	1.1486	0.00070664	615.240603721328	5.9485	0.11532	5.9485	5.9041	6.0195	0	612	28	0.914549654013882	0.0182575606051391	0.914549654013882	370.421214340767	0	7.39488308871319						187	14	3	NaN	NaN	NaN	0.0032022	1	10248	39.039	38.476	1	44196			3084	815	2632	2686	3084	3084		
DNFFEVFTPVFER	13	Unmodified	_DNFFEVFTPVFER_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.896106	1645.77766	0.83302	0.00068632	-0.1904	-0.00015687	0.64262	0.00052945	823.895583454799	19.986	0.026624	19.986	19.978	20.004	0	384	58	1.06790610341098	0.0381619117389211	1.06790610341098	431.31448230693	0	15.4131389950311						126	4	4	NaN	NaN	NaN	3.0368E-05	1	22909	84.309	76.752	1	33371			3085	2649	2633	2687	3085	3085		
DNFGFIETANHDK	13	Unmodified	_DNFGFIETANHDK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.231917	1506.67392	-1.5417	-0.00077584	0.474	0.00023853	-1.0677	-0.00053731	503.232201772966	9.2834	0.11527	9.2834	9.2303	9.3455	0	756	22	0.816857749704129	0.0142932978262608	0.816857749704129	495.25680093237	0	8.66595555807794						169	14	3	NaN	NaN	NaN	0.066237	1	18690	16.288	14.914	1	35277			3086	344	2634	2688	3086	3086		
DNFGFIETANHDK	13	Unmodified	_DNFGFIETANHDK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.344237	1506.67392	1.4992	0.0011309	1.6673	0.0012577	3.1665	0.0023886	754.345317396112	9.2745	0.20397	9.2745	9.2213	9.4253	0	420	49	1.04379886199097	0.0321651748456302	1.04379886199097	421.90260877322	0	13.0011362084965						561	24	4	NaN	NaN	NaN	0.00011983	1	18691	101.64	99.342	1	169010			3087	344	2634	2688	3087	3087		
DNFHGLAIFLDTYPNDETTER	21	Unmodified	_DNFHGLAIFLDTYPNDETTER_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.383671	2467.12918	0.44021	0.00036246	1.1599	0.00095506	1.6001	0.0013175	823.718421625495	17.122	0.17733	17.122	17.043	17.22	0	498	31	0.991429299781895	0.0201811333938051	0.991429299781895	598.9659526089	0	12.1923084082817						594	21	6	NaN	NaN	NaN	8.8787E-06	1	36663	62.304	60.457	1	219530			3088	1607	2635	2689	3088	3088		
DNFNVDEIFLK	11	Unmodified	_DNFNVDEIFLK_			0	0	0	Q6IQ22	Q6IQ22	Q6IQ22	RAB12	Ras-related protein Rab-12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.337892	1352.66123	-0.29316	-0.00019857	2.4948	0.0016899	2.2017	0.0014913	677.340149154911	16.759	0.12413	16.759	16.714	16.839	0	525	31	0.973257487423603	0.0202034745303079	0.973257487423603	393.797283295288	0	8.17468499956988						256	15	3	NaN	NaN	NaN	0.0033317	1	13962	78.932	55.879	1	68288			3089	2039	2636	2690	3089	3089		
DNFQDTLQVVTAHYR	15	Unmodified	_DNFQDTLQVVTAHYR_			0	0	0	P42892	P42892	P42892	ECE1	Endothelin-converting enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.942107	1805.86966	1.6457	0.0014876	1.0824	0.00097842	2.7281	0.002466	904.444230913289	13.779	0.10637	13.779	13.735	13.841	0	204	40	1.18784641916898	0.0258817910416804	1.18784641916898	479.401717682448	0	10.4456054939832						320	13	4	NaN	NaN	NaN	5.6568E-17	1	27373	153.52	139.72	1	72059			3090	1059	2637	2691	3090	3090		
DNFWEMGDTGPCGPCSEIHYDR	22	Unmodified	_DNFWEMGDTGPCGPCSEIHYDR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	881.682629	2642.02606	1.5351	0.0013534	-0.96257	-0.00084868	0.57249	0.00050475	882.016393383683	13.292	0.16849	13.292	13.212	13.38	0	549	52	0.957085760909907	0.0343910976262953	0.957085760909907	578.003115068133	0	20.7694674505582						984	20	6	NaN	NaN	NaN	1.2334E-12	1	37405	143.25	143	1	409560			3091	1136	2638	2692	3091	3091		
DNFWEMGDTGPCGPCSEIHYDR	22	Oxidation (M)	_DNFWEM(Oxidation (M))GDTGPCGPCSEIHYDR_	DNFWEM(1)GDTGPCGPCSEIHYDR	DNFWEM(70)GDTGPCGPCSEIHYDR	0	1	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	887.014267	2658.02097	1.2922	0.0011462	-0.2365	-0.00020978	1.0557	0.00093639	887.348314634117	11.491	0.12415	11.491	11.429	11.553	0	546	37	0.959108205975751	0.0242710246218105	0.959108205975751	579.206264027092	0	14.6572924803688						405	15	4	NaN	NaN	NaN	5.7325E-06	1	37471	69.94	69.912	1	87724			3092	1136	2638	2693	3092	3092	409	
DNHLLGTFDLTGIPPAPR	18	Unmodified	_DNHLLGTFDLTGIPPAPR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.34253	1933.00576	0.22306	0.00014395	-1.5761	-0.0010171	-1.3531	-0.00087319	645.675718388717	15.775	0.71827	15.775	15.535	16.253	0	669	235	0.875957769340875	0.158310133206357	0.875957769340875	530.022504222964	0	95.7899298148147						4329	82	5	NaN	NaN	NaN	3.2003E-19	1	30389	200.82	192.44	1	2192400			3093	638	2639	2694	3093	3093		
DNIACVILTFK	11	Unmodified	_DNIACVILTFK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.347206	1292.67986	0.61181	0.00039605	1.2658	0.00081941	1.8776	0.0012155	647.347611957371	17.415	0.34582	17.415	17.229	17.575	0	540	70	0.963152256458504	0.0465098281605225	0.963152256458504	389.891383267228	0	18.8275333577112						1207	40	6	NaN	NaN	NaN	2.6525E-05	1	12163	127.03	107.77	1	423770			3094	653	2640	2695	3094	3094		
DNIDITLQWLIQHSK	15	Unmodified	_DNIDITLQWLIQHSK_			0	0	0	Q9NVJ2;Q96BM9	Q9NVJ2	Q9NVJ2	ARL8B;ARL8A	ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.659859	1822.95775	-0.95875	-0.00058355	-0.19115	-0.00011634	-1.1499	-0.00069989	608.994182018289	18.47	0.053276	18.47	18.452	18.506	0	663	25	0.880024865079826	0.0162683841309829	0.880024865079826	532.712222828396	0	9.84786614120947						95	7	3	NaN	NaN	NaN	0.0010314	1	27812	49.097	43.069	1	21142			3095	3069	2641	2696	3095	3095		
DNIDITLQWLIQHSK	15	Unmodified	_DNIDITLQWLIQHSK_			0	0	0	Q9NVJ2;Q96BM9	Q9NVJ2	Q9NVJ2	ARL8B;ARL8A	ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.48615	1822.95775	0.77177	0.00070423	-0.73278	-0.00066865	0.038994	3.5582E-05	912.484931322479	18.47	0.053276	18.47	18.452	18.506	0	162	25	1.21569043230068	0.0158977668818747	1.21569043230068	490.604209990256	0	6.41570514537227						126	7	3	NaN	NaN	NaN	0.0017693	1	27813	47.57	47.135	1	24881			3096	3069	2641	2696	3096	3096		
DNIQGITK	8	Unmodified	_DNIQGITK_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.742899	887.471246	0.25592	0.00011382	1.1524	0.00051252	1.4083	0.00062634	444.743535340117	3.9711	0.51431	3.9711	3.9179	4.4322	0	789	64	0.794378096728713	0.0429575457334113	0.794378096728713	323.117860786333	0	17.4732288555927						1935	59	5	NaN	NaN	NaN	0.0034491	1	2115	84.368	49.437	1	4471000			3097	1397	2642	2697	3097	3097		
DNLAEDIMR	9	Unmodified	_DNLAEDIMR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.755681	1075.49681	-0.22462	-0.00012102	-0.27571	-0.00014854	-0.50033	-0.00026956	538.755767760578	11.731	0.27491	11.731	11.66	11.935	0	699	61	0.85560534332665	0.0407218276109629	0.85560534332665	347.094052355575	0	16.5196539211163						713	32	4	NaN	NaN	NaN	4.2952E-05	1	6092	125.98	98.276	1	350120			3098	588	2643	2698	3098	3098		
DNLEFFLAGIGR	12	Unmodified	_DNLEFFLAGIGR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.353877	1350.6932	0.5192	0.00035116	-0.02055	-1.3899E-05	0.49865	0.00033726	676.354186206329	18.656	0.17733	18.656	18.621	18.798	0	558	133	0.951016745717027	0.0888463120474854	0.951016745717027	384.803964704709	0	35.9493282102909						932	21	4	NaN	NaN	NaN	8.2839E-17	1	13905	187.33	168.07	1	387110			3099	1127	2644	2699	3099	3099		
DNLGMLVWSPNQNLSEAK	18	Unmodified	_DNLGMLVWSPNQNLSEAK_			0	0	0	Q9UKL0	Q9UKL0	Q9UKL0	RCOR1	REST corepressor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.49639	2014.97823	0.96528	0.00097348	-0.30877	-0.00031139	0.65651	0.00066209	1008.4965144217	15.881	0.10641	15.881	15.828	15.934	0	204	43	1.18784641916898	0.0278669582266173	1.18784641916898	479.02238470474	0	11.2378979039399						294	13	3	NaN	NaN	NaN	8.3386E-07	1	31893	108.34	102.13	1	63475			3100	3265	2645	2700	3100	3100		
DNLLLDMYLAPHVR	14	Unmodified	_DNLLLDMYLAPHVR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.295864	1668.86576	-1.5286	-0.0008519	-0.49935	-0.00027828	-2.028	-0.0011302	557.29553938364	17.051	0.12415	17.051	17.007	17.131	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	520.757783112315	0	11.1011936038144						278	15	4	NaN	NaN	NaN	0.046628	1	23599	25.613	25.323	1	67926			3101	1626	2646	2701	3101	3101		
DNLLLDMYLAPHVR	14	Unmodified	_DNLLLDMYLAPHVR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.440157	1668.86576	0.9892	0.00082642	1.4629	0.0012222	2.4521	0.0020486	835.441626793601	17.051	0.14188	17.051	17.007	17.149	0	255	40	1.15396378101328	0.0259423204238851	1.15396378101328	466.018309899849	0	10.4765821230573						368	17	4	NaN	NaN	NaN	1.1818E-05	1	23601	86.838	68.74	1	100970			3102	1626	2646	2701	3102	3102		
DNLPLQENVTIQK	13	Unmodified	_DNLPLQENVTIQK_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.406837	1510.79912	2.0392	0.0015425	-0.82031	-0.00062049	1.2189	0.00092198	756.406516898157	10.161	0.16848	10.161	10.073	10.241	0	423	43	1.04178812298108	0.0281484102411274	1.04178812298108	421.079413194024	0	11.3772808551147						439	20	4	NaN	NaN	NaN	0.00028559	1	18841	92.707	76.828	1	126490			3103	2664	2647	2702	3103	3103		
DNLQLPLQFLSR	12	Unmodified	_DNLQLPLQFLSR_			0	0	0	O15118	O15118	O15118	NPC1	Niemann-Pick C1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.401358	1442.78816	0.92481	0.00066808	-3.2925	-0.0023785	-2.3677	-0.0017104	722.399645916627	18.337	0.14187	18.337	18.257	18.399	0	465	43	1.01360860968299	0.0282145658973765	1.01360860968299	409.864843301042	0	11.4088993718709						239	17	2	NaN	NaN	NaN	0.00045175	1	16756	79.889	70.147	1	98163			3104	145	2648	2703	3104	3104		
DNLSYIEHIFEISR	14	Unmodified	_DNLSYIEHIFEISR_			0	0	0	Q15121	Q15121	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.293176	1734.8577	-1.6047	-0.00092959	0.29203	0.00016917	-1.3127	-0.00076042	579.293313400102	18.497	0.062122	18.497	18.47	18.532	0	717	28	0.84338031290707	0.0183439172239627	0.84338031290707	510.725381153761	0	11.1085164933103						176	8	4	NaN	NaN	NaN	0.00015576	1	25468	47.57	44.282	1	47233			3105	1813	2649	2704	3105	3105		
DNLSYIEHIFEISR	14	Unmodified	_DNLSYIEHIFEISR_			0	0	0	Q15121	Q15121	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.436126	1734.8577	1.5035	0.0013057	1.1031	0.00095794	2.6066	0.0022637	868.436126455289	18.497	0.11533	18.497	18.426	18.541	0	276	49	1.13998907770044	0.0319707579937258	1.13998907770044	460.230512647565	0	12.9070695754948						241	14	4	NaN	NaN	NaN	0.00095121	1	25469	72.031	66.003	1	52313			3106	1813	2649	2704	3106	3106		
DNLTLWTADNAGEEGGEAPQEPQS	24	Unmodified	_DNLTLWTADNAGEEGGEAPQEPQS_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1265.05424	2528.09392	0.99528	0.0012591	-0.36547	-0.00046234	0.62981	0.00079674	1265.55567891431	14.48	0.035462	14.48	14.462	14.498	0	69	37	1.27715511956461	0.0237488006707973	1.27715511956461	514.321961053832	0	9.56385762901294						94	5	4	NaN	NaN	NaN	0.0072528	1	36956	33.63	32.878	1	13824			3107	933	2650	2705	3107	3107		
DNLTLWTSDMQGDGEEQNK	19	Unmodified	_DNLTLWTSDMQGDGEEQNK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.97367	2179.93279	1.5603	0.0017022	0.51584	0.00056276	2.0761	0.002265	1091.47601999555	13.247	0.24834	13.247	13.185	13.434	0	126	121	1.23951419873743	0.0794671704539212	1.23951419873743	499.599535027341	0	32.0300981216332						2364	29	6	NaN	NaN	NaN	1.8741E-58	1	34444	299.46	287.78	1	1962300			3108	1375	2651	2706	3108	3108		
DNLTLWTSDMQGDGEEQNK	19	Oxidation (M)	_DNLTLWTSDM(Oxidation (M))QGDGEEQNK_	DNLTLWTSDM(1)QGDGEEQNK	DNLTLWTSDM(110)QGDGEEQNK	0	1	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.97113	2195.92771	2.2043	0.0024225	-1.4096	-0.0015491	0.79475	0.0008734	1099.47139237814	11.101	0.12413	11.101	11.048	11.172	0	165	76	1.21370334790578	0.0496907802689073	1.21370334790578	489.173636128276	0	20.0274801154125						827	15	5	NaN	NaN	NaN	4.4742E-10	1	34628	105.79	104.52	1	228790			3109	1375	2651	2707	3109	3109	487	
DNLTLWTSDMQGDGEEQNK	19	Oxidation (M)	_DNLTLWTSDM(Oxidation (M))QGDGEEQNK_	DNLTLWTSDM(1)QGDGEEQNK	DNLTLWTSDM(140)QGDGEEQNK	0	1	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.983178	2195.92771	0.62938	0.00046132	0.89228	0.00065403	1.5217	0.0011154	733.318265421835	11.101	0.12413	11.101	11.048	11.172	0	630	46	0.902373728295776	0.0304545980014471	0.902373728295776	545.540423671807	0	18.411677751126						563	15	6	NaN	NaN	NaN	8.5043E-11	1	34629	137.58	134.32	1	144830			3110	1375	2651	2707	3110	3110	487	
DNLTLWTSDQQDDDGGEGNN	20	Unmodified	_DNLTLWTSDQQDDDGGEGNN_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1097.44379	2192.87303	1.5636	0.001716	0.26408	0.00028981	1.8277	0.0020058	1097.94602361947	13.797	0.13299	13.797	13.726	13.859	0	177	25	1.2057522832638	0.0159064952791819	1.2057522832638	485.973272409103	0	6.41104451609215						205	16	3	NaN	NaN	NaN	2.1545E-07	1	34596	115.24	115.14	1	36140			3111	1361	2652	2708	3111	3111		
DNLTLWTSDTQGDEAEAGEGGEN	23	Unmodified	_DNLTLWTSDTQGDEAEAGEGGEN_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1205.00167	2407.98879	1.6238	0.0019566	-0.5211	-0.00062793	1.1027	0.0013287	1205.50224957892	14.232	0.11525	14.232	14.196	14.311	0	117	85	1.24546401832526	0.0555050694189332	1.24546401832526	501.696510160805	0	22.3584938737584						619	14	4	NaN	NaN	NaN	7.5012E-25	1	36388	186.55	185.61	1	126810			3112	1427	2653	2709	3112	3112		
DNMALQR	7	Unmodified	_DNMALQR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	424.20817	846.401786	-0.3507	-0.00014877	0.85434	0.00036242	0.50364	0.00021365	424.20836486857	3.4746	0.19519	3.4746	3.3947	3.5898	0	819	31	0.773912161060781	0.0204801911124388	0.773912161060781	315.025768932576	0	8.33658944477475						350	23	3	NaN	NaN	NaN	0.0077298	1	1506	76.833	57.878	1	112280			3113	1007	2654	2710	3113	3113		
DNMAQEGVILDDVDSSVCR	19	Unmodified	_DNMAQEGVILDDVDSSVCR_			0	0	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.97262	2121.93068	1.3054	0.0013863	-0.10158	-0.00010788	1.2038	0.0012784	1062.4753908362	14.391	0.097527	14.391	14.347	14.444	1.7764E-15	174	61	1.20774045859593	0.039749886484578	1.20774045859593	486.877036836018	0	16.0243923339944						522	12	5	NaN	NaN	NaN	9.6143E-15	1	33641	142.73	139.48	1	193770			3114	2760	2655	2711	3114	3114		
DNMAQEGVILDDVDSSVCR	19	Oxidation (M)	_DNM(Oxidation (M))AQEGVILDDVDSSVCR_	DNM(1)AQEGVILDDVDSSVCR	DNM(110)AQEGVILDDVDSSVCR	0	1	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.97008	2137.9256	1.3588	0.0014539	0.20894	0.00022356	1.5678	0.0016775	1070.47155406724	13.079	0.062064	13.079	13.043	13.105	0	165	43	1.21370334790578	0.0278172796533693	1.21370334790578	489.257054451184	0	11.2134487636833						277	8	4	NaN	NaN	NaN	6.7389E-14	1	33843	112.68	109.61	1	57604			3115	2760	2655	2712	3115	3115	624	
DNNELLLFILK	11	Unmodified	_DNNELLLFILK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.382103	1330.74965	0.20289	0.00013521	-0.79365	-0.00052887	-0.59076	-0.00039367	666.381419532348	19.898	0.03547	19.898	19.88	19.915	0	525	28	0.973257487423603	0.0181843844613631	0.973257487423603	393.862875977227	0	7.35895079604029						71	5	3	NaN	NaN	NaN	0.0024347	1	13327	54.584	50.691	1	20438			3116	1144	2656	2713	3116	3116		
DNNLLGR	7	Unmodified	_DNNLLGR_			0	0	0	P0DMV8;P0DMV9;P17066	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	401.214309	800.414065	-0.91934	-0.00036885	1.5019	0.00060258	0.58255	0.00023373	401.214969758037	5.0795	0.17733	5.0795	5.0085	5.1859	0	825	73	0.769815552739974	0.0491524870385582	0.769815552739974	313.645092851021	0	20.0261430237361						364	21	2	NaN	NaN	NaN	0.032483	1	987	42.229	30.58	1	84514			3117	618;734	2657	2714	3117	3117		
DNPEATQQMNDLIIGK	16	Unmodified	_DNPEATQQMNDLIIGK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.935633	1785.85671	1.8652	0.0016674	-0.18858	-0.00016858	1.6766	0.0014988	893.937217844485	12.148	0.21285	12.148	12.05	12.263	0	303	55	1.12200181823275	0.0359918600529883	1.12200181823275	452.866237347433	0	14.5271584880364						647	25	6	NaN	NaN	NaN	0.0001248	1	26846	76.563	55.475	1	136510			3118	1991	2658	2715	3118	3118		
DNPFSLGESFGSR	13	Unmodified	_DNPFSLGESFGSR_			0	0	0	Q8N6H7	Q8N6H7	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.82568	1411.63681	1.3393	0.00094665	-0.65889	-0.00046572	0.68041	0.00048093	706.825363829075	13.824	0.15959	13.824	13.726	13.886	0	498	31	0.991429299781895	0.0201783433575858	0.991429299781895	400.98036801864	0	8.16106559218213						299	19	3	NaN	NaN	NaN	0.038437	1	15800	43.613	40.005	1	69241			3119	2263	2659	2716	3119	3119		
DNPGVVTCLDEAR	13	Unmodified	_DNPGVVTCLDEAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.338098	1444.66164	2.0745	0.0015005	1.6601	0.0012008	3.7345	0.0027013	723.339461026611	8.7866	0.34608	8.7866	8.7068	9.0528	0	459	79	1.01763759082241	0.052398509533186	1.01763759082241	411.488923019618	0	21.1877061638604						1931	40	6	NaN	NaN	NaN	5.1524E-17	1	16807	181.87	156.61	1	1755400			3120	804	2660	2717	3120	3120		
DNPNLLFNMCGFECR	15	Unmodified	_DNPNLLFNMCGFECR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.902756	1885.79096	0.88373	0.00083415	0.16504	0.00015578	1.0488	0.00098994	943.90330308504	16.803	0.11527	16.803	16.75	16.865	0	273	37	1.14198628764525	0.0239648752236348	1.14198628764525	460.744188371917	0	9.66883499723588						345	14	5	NaN	NaN	NaN	9.9229E-05	1	29275	79.795	76.71	1	92368			3121	2064	2661	2718	3121	3121		
DNPNQYHYVA	10	Unmodified	_DNPNQYHYVA_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.770177	1219.5258	0.82463	0.00050366	1.8339	0.0011201	2.6585	0.0016238	610.771579836539	5.3898	0.14186	5.3898	5.3366	5.4785	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.451380453385	0	8.21663656643966						263	17	4	NaN	NaN	NaN	0.0092458	1	9997	58.286	46.219	1	66784			3122	1696	2662	2719	3122	3122		
DNPQTHYYAVAVVK	14	Unmodified	_DNPQTHYYAVAVVK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.907005	1603.79946	2.4715	0.0019843	0.14699	0.00011802	2.6184	0.0021024	802.906845288533	7.6068	0.1508	7.6068	7.5624	7.7132	0	276	61	1.13998907770044	0.0399634543000309	1.13998907770044	460.528520844107	0	16.1442866924121						641	18	4	NaN	NaN	NaN	0.00039824	1	21710	56.938	53.593	1	229690		+	3123	37	2663	2720	3123	3123		
DNPTAQQIMQLLR	13	Unmodified	_DNPTAQQIMQLLR_			0	0	0	Q08379	Q08379	Q08379	GOLGA2	Golgin subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.401032	1526.78751	0.64135	0.00049025	-1.6267	-0.0012434	-0.98534	-0.0007532	764.399950775841	17.433	0.133	17.433	17.38	17.513	0	447	31	1.02569221487577	0.0201254424104516	1.02569221487577	414.534210762201	0	8.13371132671318						237	16	3	NaN	NaN	NaN	0.00019255	1	19326	90.306	64.718	1	51635			3124	1577	2664	2721	3124	3124		
DNQLSEVANK	10	Unmodified	_DNQLSEVANK_			0	0	0	Q14978	Q14978	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.277835	1116.54112	0.71796	0.00040154	0.82563	0.00046176	1.5436	0.0008633	559.27802211685	4.5918	0.044308	4.5918	4.5652	4.6095	0	666	10	0.877991458330206	0.00610191392221049	0.877991458330206	356.0098136804	0	2.47421682515159						37	6	2	NaN	NaN	NaN	4.641E-05	1	7169	129.72	78.291	1	17920			3125	1781	2665	2722	3125	3125		
DNSNIILLGDSQGDLR	16	Unmodified	_DNSNIILLGDSQGDLR_			0	0	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.439397	1728.86424	2.8189	0.0024395	0.3614	0.00031277	3.1803	0.0027523	865.439363290361	13.549	0.14189	13.549	13.504	13.646	-1.7764E-15	309	49	1.11800162319566	0.0320059751751898	1.11800162319566	451.366256949296	0	12.9216424333485						506	17	3	NaN	NaN	NaN	1.2267E-06	1	25300	113.86	100.06	1	195540			3126	2848	2666	2723	3126	3126		
DNSTMGYMAAK	11	Unmodified	_DNSTMGYMAAK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.754824	1187.49509	1.6624	0.0009887	1.4714	0.00087514	3.1338	0.0018638	594.756104162091	5.7711	0.33699	5.7711	5.7091	6.0461	0	612	40	0.914549654013882	0.0263720347724746	0.914549654013882	370.563182652233	0	10.6855927345364						856	39	5	NaN	NaN	NaN	0.0015755	1	9077	78.816	74.613	1	651760			3127	567	2667	2724	3127	3127		
DNSTMGYMAAK	11	Oxidation (M)	_DNSTMGYM(Oxidation (M))AAK_	DNSTM(0.027)GYM(0.973)AAK	DNSTM(-16)GYM(16)AAK	0	1	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.752281	1203.49001	1.2273	0.00073973	2.3576	0.0014211	3.5849	0.0021608	602.753315651265	3.6519	0.18619	3.6519	3.5721	3.7583	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	367.21855567293	0	8.22242008513786						212	22	3	NaN	NaN	NaN	0.053104	1	9558	51.872	49.274	2	71567			3128	567	2667	2725	3128	3128	145	
DNSTMGYMMAK	11	Unmodified	_DNSTMGYMMAK_			0	0	0	P08238;Q58FF7	P08238	P08238	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.756509	1247.49846	1.7901	0.0011184	-0.74189	-0.0004635	1.0482	0.0006549	624.756512103972	8.0237	0.16861	8.0237	7.9615	8.1302	0	570	31	0.942920803299286	0.0202454642733264	0.942920803299286	381.847672222924	0	8.19865611066422						441	20	5	NaN	NaN	NaN	0.0063219	1	10841	67.881	64.273	1	174200			3129	579	2668	2726	3129	3129		
DNSTMGYMMAK	11	Oxidation (M)	_DNSTMGYMM(Oxidation (M))AK_	DNSTMGYM(0.185)M(0.814)AK	DNSTM(-33)GYM(-6.4)M(6.4)AK	0	1	0	P08238;Q58FF7	P08238	P08238	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.753966	1263.49338	1.262	0.00079853	0.67043	0.00042422	1.9324	0.0012228	632.754564564392	5.8953	0.11533	5.8953	5.8598	5.9751	0	573	37	0.940896116921038	0.0242945584092671	0.940896116921038	380.974939723441	0	9.83702425711556						199	14	3	NaN	NaN	NaN	0.011167	1	11310	72.365	69.02	3	55632			3130	579	2668	2727	3130	3130	150	
DNSVFHVSNLEFPFR	15	Unmodified	_DNSVFHVSNLEFPFR_			0	0	0	O60942	O60942	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5-triphosphatase;mRNA guanylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.296921	1806.86893	-2.5081	-0.0015132	0.28017	0.00016902	-2.228	-0.0013441	603.631790499979	16.794	0.070904	16.794	16.768	16.839	0	726	25	0.837263974740672	0.0163159042618426	0.837263974740672	506.861478752981	0	9.87729510744936						123	9	3	NaN	NaN	NaN	0.0038026	1	27395	51.454	51.454	1	20670			3131	297	2669	2728	3131	3131		
DNTIEHLLPLFLAQLK	16	Unmodified	_DNTIEHLLPLFLAQLK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.355888	1864.04583	-0.027206	-1.6932E-05	-1.6807	-0.001046	-1.7079	-0.0010629	622.354869418831	20.102	0.062067	20.102	20.084	20.146	0	618	31	0.910492137470517	0.0202875850561227	0.910492137470517	551.06357549741	0	12.278798134703						145	8	5	NaN	NaN	NaN	4.6933E-09	1	28790	187.51	187.34	1	99314			3132	905	2670	2729	3132	3132		
DNTINLIHTFR	11	Unmodified	_DNTINLIHTFR_			0	0	0	O15144	O15144	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.356951	1342.69935	1.7371	0.001168	-0.029026	-1.9516E-05	1.7081	0.0011485	672.357051717961	11.385	0.14193	11.385	11.341	11.483	0	429	28	1.03776581230406	0.0181016489291916	1.03776581230406	419.930019371667	0	7.32479880852674						282	17	4	NaN	NaN	NaN	1.0049E-07	1	13693	138.23	125.06	1	91636			3133	148	2671	2730	3133	3133		
DNTQLLINQLWQLPTER	17	Unmodified	_DNTQLLINQLWQLPTER_			0	0	0	Q15050	Q15050	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.55255	2081.09055	1.5391	0.0016031	-1.5676	-0.0016328	-0.028516	-2.97E-05	1042.05160008726	19.836	0.088686	19.836	19.809	19.898	0	180	82	1.203763835057	0.053666049258249	1.203763835057	485.335864132433	0	21.6371830028377						358	11	4	NaN	NaN	NaN	0.0001055	1	33051	78.157	64.812	1	105560			3134	1802	2672	2731	3134	3134		
DNTRPGANSPEMWSEAIK	18	Unmodified	_DNTRPGANSPEMWSEAIK_			0	0	1	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.314423	2001.92144	-0.12256	-8.1906E-05	-0.045902	-3.0677E-05	-0.16846	-0.00011258	668.64860399923	9.9218	0.097453	9.9218	9.8776	9.975	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	522.507540389674	0	9.85079103841508						203	12	4	NaN	NaN	NaN	0.0027303	1	31661	53.363	52.482	1	39513			3135	2404	2673	2732	3135	3135		
DNTSVYHISGK	11	Unmodified	_DNTSVYHISGK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.798934	1219.58332	2.0355	0.0012433	1.267	0.00077389	3.3025	0.0020172	611.30289057196	4.113	0.24829	4.113	4.0332	4.2815	0	609	43	0.916577990479294	0.0283908138186021	0.916577990479294	371.272793484384	0	11.5000980442652						503	29	4	NaN	NaN	NaN	0.00017713	1	10005	96.957	47.797	1	130770			3136	3042	2674	2733	3136	3136		
DNVCSPGGATIHALHFLESGGFR	23	Unmodified	_DNVCSPGGATIHALHFLESGGFR_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	611.295933	2441.15463	-0.28583	-0.00017472	-0.11041	-6.7496E-05	-0.39624	-0.00024222	611.546577940867	15.775	0.1419	15.775	15.686	15.828	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	730.196814644162	0	14.7159256925198						276	17	4	NaN	NaN	NaN	8.0135E-05	1	36536	33.63	33.266	1	52042			3137	2490	2675	2734	3137	3137		
DNVCSPGGATIHALHFLESGGFR	23	Unmodified	_DNVCSPGGATIHALHFLESGGFR_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.725485	2441.15463	1.0254	0.00083545	0.24255	0.00019761	1.268	0.0010331	815.059393721092	15.766	0.15076	15.766	15.677	15.828	0	504	49	0.987393073566096	0.0322987503458569	0.987393073566096	596.563036762307	0	19.5142553718372						594	18	4	NaN	NaN	NaN	0.0096597	1	36537	38.656	30.243	1	122190			3138	2490	2675	2734	3138	3138		
DNVDDPTGNFR	11	Unmodified	_DNVDDPTGNFR_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.275823	1248.53709	1.3056	0.00081637	0.76957	0.00048119	2.0752	0.0012976	625.276153165678	6.3742	0.25713	6.3742	6.2944	6.5515	0	615	43	0.912521036363781	0.0284026223535851	0.912521036363781	369.533532058419	0	11.5018952328652						606	30	3	NaN	NaN	NaN	7.0214E-08	1	10860	129.28	120.81	1	211930			3139	1607	2676	2735	3139	3139		
DNVSSPGGATIHALHVLESGGFR	23	Unmodified	_DNVSSPGGATIHALHVLESGGFR_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.392612	2320.15601	0.57495	0.00044523	-0.34977	-0.00027086	0.22518	0.00017438	774.726835241031	14.764	0.21283	14.764	14.648	14.861	0	534	40	0.967195187796614	0.0262736050362692	0.967195187796614	584.5322947381	0	15.8786673431241						667	25	5	NaN	NaN	NaN	1.9001E-06	1	35820	76.23	74.606	1	227970			3140	938	2677	2736	3140	3140		
DNVSSPGGATIHALHVLESGGFR	23	Unmodified	_DNVSSPGGATIHALHVLESGGFR_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	581.046278	2320.15601	-0.84943	-0.00049356	1.1929	0.00069312	0.34345	0.00019956	581.297573159663	14.755	0.15965	14.755	14.684	14.843	0	621	34	0.908462957275599	0.0223240803246195	0.908462957275599	732.047426631403	0	17.9889399151283						364	19	4	NaN	NaN	NaN	0.00040782	1	35821	38.656	37.713	1	71572			3141	938	2677	2736	3141	3141		
DNWDDDDDEK	10	Unmodified	_DNWDDDDDEK_			0	0	0	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.723286	1265.43202	2.8926	0.0018331	-1.1977	-0.00075899	1.695	0.0010742	633.722295364222	3.7583	0.26603	3.7583	3.714	3.98	0	588	34	0.93076847747433	0.0222869832094168	0.93076847747433	376.867958361631	0	9.02399475642369						377	31	3	NaN	NaN	NaN	0.0056272	1	11364	37.591	33.389	1	120950			3142	363	2678	2737	3142	3142		
DNWDDDDDEKK	11	Unmodified	_DNWDDDDDEKK_			0	0	1	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.770768	1393.52698	2.3325	0.0016276	-0.050872	-3.5497E-05	2.2816	0.0015921	697.770666077946	2.6587	0.097564	2.6587	2.6232	2.7208	0	573	19	0.940896116921038	0.0121489600135238	0.940896116921038	380.59035910493	0	4.91422694933556						88	12	2	NaN	NaN	NaN	0.0023043	1	15255	72.922	72.598	1	17352			3143	363	2679	2738	3143	3143		
DNWEELYNR	9	Unmodified	_DNWEELYNR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.775459	1237.53637	0.93028	0.00057656	1.0764	0.00066714	2.0067	0.0012437	619.776061189768	10.294	0.11525	10.294	10.259	10.374	0	588	34	0.93076847747433	0.0222931596374992	0.93076847747433	376.95963866308	0	9.0286914576368						253	14	3	NaN	NaN	NaN	0.0073458	1	10537	67.507	56.805	1	67866			3144	1277	2680	2739	3144	3144		
DNWVFCGGK	9	Unmodified	_DNWVFCGGK_			0	0	0	Q92520	Q92520	Q92520	FAM3C	Protein FAM3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.739834	1081.46511	0.64283	0.00034825	0.55354	0.00029988	1.1964	0.00064812	541.739825087264	9.7889	0.11526	9.7889	9.7534	9.8686	0	687	28	0.863749705078866	0.0183235429829339	0.863749705078866	350.373522562463	0	7.43280635930182						180	14	3	NaN	NaN	NaN	0.047521	1	6232	25.254	20.714	1	34559			3145	2405	2681	2740	3145	3145		
DNYSPGWK	8	Unmodified	_DNYSPGWK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.719424	965.424296	-0.87717	-0.00042431	-0.69171	-0.00033459	-1.5689	-0.0007589	483.719131428929	5.5671	0.14191	5.5671	5.5228	5.6647	-8.8818E-16	801	25	0.78619514174348	0.0163704683781356	0.78619514174348	319.395790951579	0	6.65058637259864						233	17	3	NaN	NaN	NaN	0.024664	1	3541	45.489	39.259	1	55608			3146	565	2682	2741	3146	3146		
DNYVPEVSALDQEIIEVDPDTK	22	Unmodified	_DNYVPEVSALDQEIIEVDPDTK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.402508	2488.18569	0.44973	0.00037346	-0.3186	-0.00026457	0.13113	0.00010889	830.73679637007	18.16	0.10639	18.16	18.098	18.204	0	579	37	0.936845902828289	0.0242945584092671	0.936845902828289	565.962908420189	0	14.6767135284288						238	13	3	NaN	NaN	NaN	0.00011063	1	36767	70.831	68.381	1	41513			3147	589	2683	2742	3147	3147		
DNYVPEVSALDQEIIEVDPDTK	22	Unmodified	_DNYVPEVSALDQEIIEVDPDTK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1245.10012	2488.18569	0.45466	0.0005661	0.44706	0.00055663	0.90172	0.0011227	1245.60229886377	18.16	0.17734	18.16	18.089	18.266	0	69	58	1.27715511956461	0.0376100012347553	1.27715511956461	514.367088061395	0	15.1472178443769						936	21	5	NaN	NaN	NaN	1.9693E-06	1	36768	93.576	92.879	1	211130			3148	589	2683	2742	3148	3148		
DNYVPEVSALDQEIIEVDPDTK	22	Unmodified	_DNYVPEVSALDQEIIEVDPDTK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.402508	2488.18569	1.0107	0.00083926	0.21196	0.00017601	1.2226	0.0010153	830.73653383497	18.16	0.1064	18.16	18.107	18.213	0	465	61	1.01360860968299	0.0402842653635953	1.01360860968299	612.336429408311	0	24.3363394691327						383	13	3	NaN	NaN	NaN	0.00080365	1	36769	35.225	35.16	1	80424			3149	589	2683	2742	3149	3149		
DPAAGHTEESMTDDK	15	Unmodified	_DPAAGHTEESMTDDK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.330666	1602.64678	2.6454	0.0021225	-1.5264	-0.0012247	1.119	0.00089783	802.329444954848	2.969	0.026621	2.969	2.9513	2.9779	0	402	25	1.05585747106793	0.0160670595642813	1.05585747106793	426.543982126541	0	6.49075065092001						46	4	2	NaN	NaN	NaN	0.0024546	1	21662	50.314	49.262	1	7203.8			3150	1074	2684	2743	3150	3150		
DPAEALQLPMDYVQR	15	Unmodified	_DPAEALQLPMDYVQR_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.429987	1744.84542	1.7756	0.0015509	0.53106	0.00046384	2.3066	0.0020147	873.430129504759	15.686	0.27483	15.686	15.553	15.828	0	330	55	1.10399226369747	0.036051375024104	1.10399226369747	445.677842015422	0	14.5538148687918						527	32	4	NaN	NaN	NaN	0.00024906	1	25747	68.108	60.143	1	133940			3151	3337	2685	2744	3151	3151		
DPAEGDGAQPEETPR	15	Unmodified	_DPAEGDGAQPEETPR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.844798	1567.67504	2.9492	0.0023147	-1.681	-0.0013193	1.2683	0.00099539	784.843462830359	3.5544	0.3458	3.5544	3.4923	3.8381	0	498	91	0.991429299781895	0.0605183528841725	0.991429299781895	400.592915902532	0	24.4528010749959						1545	40	5	NaN	NaN	NaN	4.6062E-33	1	20574	211.52	203.52	1	622610			3152	1771	2686	2745	3152	3152		
DPAETLHLSEPLGGK	15	Unmodified	_DPAETLHLSEPLGGK_			0	0	0	Q86X76	Q86X76	Q86X76	NIT1	Nitrilase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.938622	1562.79404	-0.10036	-5.2381E-05	-0.99273	-0.00051815	-1.0931	-0.00057053	521.938002534827	10.17	0.16848	10.17	10.108	10.277	0	717	37	0.84338031290707	0.0244636567629751	0.84338031290707	511.170343990629	0	14.8273509013918						303	20	3	NaN	NaN	NaN	0.0001443	1	20445	52.863	48.881	1	71200			3153	2184	2687	2746	3153	3153		
DPANFQYPAESVLAYK	16	Unmodified	_DPANFQYPAESVLAYK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.943784	1811.87302	2.4836	0.0022525	1.1172	0.0010132	3.6008	0.0032657	907.445871133223	14.551	0.33695	14.551	14.391	14.728	0	270	106	1.14398322290989	0.0698832235541005	1.14398322290989	461.687356889976	0	28.2033863150327						2418	39	6	NaN	NaN	NaN	1.3472E-24	1	27523	241.15	231.41	1	2134400			3154	715	2688	2747	3154	3154		
DPAQPMSPGEATQSGAR	17	Unmodified	_DPAQPMSPGEATQSGAR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.38885	1698.76315	2.6551	0.0022579	-2.0717	-0.0017617	0.58343	0.00049614	850.387145142616	4.911	0.13299	4.911	4.8489	4.9819	0	408	40	1.0518390438467	0.0261215838858069	1.0518390438467	424.714561931695	0	10.5474474653932						377	16	3	NaN	NaN	NaN	1.4198E-06	1	24452	58.508	48.766	1	82026			3155	2698	2689	2748	3155	3155		
DPDAGIDEAQVEQDAQALFQAGELK	25	Unmodified	_DPDAGIDEAQVEQDAQALFQAGELK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	886.755833	2657.24567	1.6625	0.0014742	-0.24146	-0.00021412	1.421	0.0012601	887.4248792541	19.543	0.053219	19.543	19.516	19.57	0	333	28	1.10198982404297	0.0180244409504104	1.10198982404297	665.493605360493	0	10.8849917948319						91	7	3	NaN	NaN	NaN	0.00020261	1	37468	75.312	74.615	1	19010			3156	591	2690	2749	3156	3156		
DPDAQPGGELMLGGTDSK	18	Unmodified	_DPDAQPGGELMLGGTDSK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.409448	1786.80434	2.793	0.0024981	-0.096752	-8.6536E-05	2.6963	0.0024116	894.409342363375	9.9928	0.24825	9.9928	9.913	10.161	0	342	76	1.09598084995137	0.0501231385671799	1.09598084995137	442.36175662486	0	20.2307910992358						1324	29	5	NaN	NaN	NaN	1.121E-05	1	26880	78.888	77.3	1	329850			3157	557	2691	2750	3157	3157		
DPDAQPGGELMLGGTDSK	18	Oxidation (M)	_DPDAQPGGELM(Oxidation (M))LGGTDSK_	DPDAQPGGELM(1)LGGTDSK	DPDAQPGGELM(64)LGGTDSK	0	1	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.406905	1802.79926	2.6343	0.0023772	0.3562	0.00032144	2.9905	0.0026986	902.408289798418	8.343	0.18633	8.343	8.2454	8.4318	0	333	52	1.10198982404297	0.0340367978310923	1.10198982404297	444.75671750585	0	13.7370546873367						402	22	2	NaN	NaN	NaN	0.027938	1	27276	63.79	60.502	1	107180			3158	557	2691	2751	3158	3158	135	
DPDASKPEDWDER	13	Unmodified	_DPDASKPEDWDER_			0	0	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.334066	1558.65358	2.5811	0.0020141	-0.8126	-0.0006341	1.7685	0.00138	780.333624662916	5.1947	0.31922	5.1947	5.1238	5.443	0	453	61	1.02166545906632	0.0402787014573001	1.02166545906632	412.830932312129	0	16.2756739276822						1511	37	5	NaN	NaN	NaN	3.9265E-10	1	20309	119.43	114.28	1	889220			3159	868	2692	2752	3159	3159		
DPDASKPEDWDER	13	Unmodified	_DPDASKPEDWDER_			0	0	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.55847	1558.65358	0.94449	0.00049166	1.3517	0.00070362	2.2961	0.0011953	520.559251109905	5.1947	0.25716	5.1947	5.1238	5.381	0	714	70	0.845418525735192	0.0468854394660304	0.845418525735192	512.417627050901	0	28.4177894180038						1295	30	5	NaN	NaN	NaN	2.9858E-07	1	20310	128.97	120.5	1	721990			3160	868	2692	2752	3160	3160		
DPDDHTVCHLLFANQTEK	18	Unmodified	_DPDDHTVCHLLFANQTEK_			0	0	0	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	535.749556	2138.96912	-0.46438	-0.00024879	-0.032702	-1.752E-05	-0.49708	-0.00026631	536.000318457511	10.241	0.21279	10.241	10.17	10.383	0	726	46	0.837263974740672	0.030590200468438	0.837263974740672	675.014254048781	0	24.6622594227834						663	25	5	NaN	NaN	NaN	0.0055456	1	33858	49.097	47.917	1	191550			3161	474	2693	2753	3161	3161		
DPDSNPYSLLDNTESDQTADTDASESHHSTNR	32	Unmodified	_DPDSNPYSLLDNTESDQTADTDASESHHSTNR_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	880.621726	3518.4578	2.3737	0.0020904	1.3459	0.0011852	3.7196	0.0032756	880.873818583517	9.6292	0.088653	9.6292	9.5849	9.6736	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	837.779738624803	0	17.7892992747429						295	11	5	NaN	NaN	NaN	1.6411E-10	1	38660	81.897	80.938	1	63626			3162	1178	2694	2754	3162	3162		
DPEEADYCIQTLDGR	15	Unmodified	_DPEEADYCIQTLDGR_			0	0	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.385973	1780.75739	2.1908	0.0019529	0.18324	0.00016333	2.3741	0.0021162	891.385981760081	10.507	0.062111	10.507	10.472	10.534	0	375	31	1.07392668217569	0.0200589169906749	1.07392668217569	433.471547501418	0	8.09642774824727						138	8	3	NaN	NaN	NaN	0.00032711	1	26690	46.768	44.784	1	28003			3163	224	2695	2755	3163	3163		
DPEGFVGHPVNAFK	14	Unmodified	_DPEGFVGHPVNAFK_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.252652	1512.73613	-0.7559	-0.00038192	2.9383	0.0014846	2.1824	0.0011027	505.255201015953	9.3721	0.17741	9.3721	9.31	9.4874	0	702	46	0.853568545818287	0.030568952954407	0.853568545818287	517.495509383863	0	18.533128895122						373	21	4	NaN	NaN	NaN	0.033963	1	18888	36.514	33.843	1	100590			3164	681	2696	2756	3164	3164		
DPELWGSVLLESNPYR	16	Unmodified	_DPELWGSVLLESNPYR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.96779	1873.92103	1.4903	0.0013979	-0.8607	-0.00080731	0.62962	0.00059057	938.469152663141	18.479	0.14194	18.479	18.435	18.577	0	231	85	1.16991841121525	0.0558412531789176	1.16991841121525	472.035482537522	0	22.5306761882906						772	17	5	NaN	NaN	NaN	1.9758E-06	1	29021	95.656	82.438	1	200130			3165	1503	2697	2757	3165	3165		
DPENFPFVVLGNK	13	Unmodified	_DPENFPFVVLGNK_			0	0	0	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.380091	1474.74563	0.25834	0.00019075	-0.42867	-0.00031652	-0.17033	-0.00012577	738.379684270644	16.732	0.41674	16.732	16.555	16.972	0	504	70	0.987393073566096	0.0463877641696587	0.987393073566096	399.182086921188	0	18.7535896337364						2302	48	4	NaN	NaN	NaN	1.0302E-16	1	17736	156.57	144.61	1	826090			3166	1180	2698	2758	3166	3166		
DPESNINSDNEK	12	Unmodified	_DPESNINSDNEK_			0	0	0	Q9H2U1	Q9H2U1	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.29441	1360.57427	2.18	0.0014852	1.1284	0.00076874	3.3084	0.002254	681.294866876139	2.7474	0.097524	2.7474	2.7385	2.836	0	561	16	0.948993180460448	0.0101192275394023	0.948993180460448	383.956928938587	0	4.09417855602982						64	12	2	NaN	NaN	NaN	0.064899	1	14212	34.193	31.522	1	11716			3167	2873	2699	2759	3167	3167		
DPETLVGYSMVGCQR	15	Unmodified	_DPETLVGYSMVGCQR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.392547	1710.77054	2.1254	0.0018202	0.51976	0.00044512	2.6451	0.0022653	856.393477024066	12.298	0.17736	12.298	12.236	12.414	0	258	61	1.15196821829984	0.039924995069111	1.15196821829984	465.118574709186	0	16.1201120888761						761	21	5	NaN	NaN	NaN	6.4333E-09	1	24771	148.76	144.78	1	249380			3168	1127	2700	2760	3168	3168		
DPFAHLPK	8	Unmodified	_DPFAHLPK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.750527	923.486502	0.09427	4.3623E-05	0.9253	0.00042818	1.0196	0.00047181	462.750952853894	7.0303	0.4789	7.0303	6.9062	7.3851	0	702	100	0.853568545818287	0.067289158411049	0.853568545818287	346.987598064965	0	27.3539876407693						2277	55	4	NaN	NaN	NaN	0.0085397	1	2767	85.813	47.491	1	2527300			3169	859	2701	2761	3169	3169		
DPFVIPLGK	9	Unmodified	_DPFVIPLGK_			0	0	0	Q9H2U1	Q9H2U1	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.289485	984.564418	-0.55638	-0.00027446	-5.9916	-0.0029556	-6.548	-0.0032301	493.286658862771	14.09	0.15073	14.09	14.01	14.161	0	702	43	0.853568545818287	0.0285131915088889	0.853568545818287	346.671932990841	0	11.5804679829766						332	18	3	NaN	NaN	NaN	0.062368	1	3941	33.396	29.937	1	85463			3170	2873	2702	2762	3170	3170		
DPGEARPDITHQSLLMLMDSPLNR	24	Unmodified	_DPGEARPDITHQSLLMLMDSPLNR_			0	0	1	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	677.338906	2705.32652	-0.15732	-0.00010656	-1.7617	-0.0011933	-1.9191	-0.0012999	677.588318201488	16.59	0.088659	16.59	16.546	16.635	0	603	16	0.920633820089869	0.0101388716490922	0.920633820089869	741.226548856116	0	8.16307274157941						133	11	4	NaN	NaN	NaN	0.01477	1	37621	16.417	15.576	1	21050			3171	2450	2703	2763	3171	3171		
DPGLVDQLVK	10	Unmodified	_DPGLVDQLVK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.305864	1082.59717	-0.70708	-0.00038345	-0.33192	-0.00018	-1.039	-0.00056346	542.30564976664	12.006	0.18628	12.006	11.944	12.13	0	690	37	0.86171403876517	0.024426303976944	0.86171403876517	349.543176221168	0	9.90821489653314						367	22	4	NaN	NaN	NaN	0.00052706	1	6279	101.82	87.823	1	177220			3172	1139	2704	2764	3172	3172		
DPGMGAMGGMGGGMGGGMF	19	Unmodified	_DPGMGAMGGMGGGMGGGMF_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.813706	1673.61286	1.6225	0.0013593	-1.065	-0.0008923	0.55745	0.00046704	837.81394123727	17.903	0.32807	17.903	17.841	18.169	0	399	88	1.0578662689527	0.0582471616900897	1.0578662689527	427.200189691924	0	23.5220644171378						2164	38	6	NaN	NaN	NaN	8.128E-27	1	23719	211.68	211.57	1	1480900			3173	635	2705	2765	3173	3173		
DPGMGAMGGMGGGMGGGMF	19	Oxidation (M)	_DPGMGAMGGM(Oxidation (M))GGGMGGGMF_	DPGMGAMGGM(1)GGGMGGGMF	DPGM(-57)GAM(-41)GGM(41)GGGM(-44)GGGM(-120)F	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.811164	1689.60777	1.0104	0.00085465	-0.88294	-0.0007468	0.12751	0.00010785	845.811371403233	15.704	0.14181	15.704	15.633	15.775	0	378	43	1.07192009927972	0.0280979774914514	1.07192009927972	432.841922189349	0	11.3459786743481						494	17	4	NaN	NaN	NaN	6.079E-14	1	24190	147.19	146.98	5	119760			3174	635	2705	2766	3174	3174	176;177;178	
DPGMGAMGGMGGGMGGGMF	19	Oxidation (M)	_DPGMGAMGGMGGGMGGGM(Oxidation (M))F_	DPGMGAMGGMGGGMGGGM(1)F	DPGM(-170)GAM(-160)GGM(-120)GGGM(-54)GGGM(54)F	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.811164	1689.60777	1.4513	0.0012276	-1.2102	-0.0010236	0.24112	0.00020394	845.810716726483	15.198	0.10638	15.198	15.145	15.251	0	378	40	1.07192009927972	0.0260855828537037	1.07192009927972	432.841923343174	0	10.5333726473752						454	13	5	NaN	NaN	NaN	2.9453E-14	1	24191	176.45	175.57	5	127780			3175	635	2705	2766	3175	3175	176;177;178	
DPGMGAMGGMGGGMGGGMF	19	Oxidation (M)	_DPGM(Oxidation (M))GAMGGMGGGMGGGMF_	DPGM(0.939)GAM(0.061)GGMGGGMGGGMF	DPGM(12)GAM(-12)GGM(-36)GGGM(-58)GGGM(-72)F	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.811164	1689.60777	0.6657	0.00056306	1.0333	0.00087401	1.699	0.0014371	845.812173658782	16.236	0.12415	16.236	16.209	16.333	0	384	28	1.06790610341098	0.0180667195029678	1.06790610341098	431.221061732147	0	7.29535109987881						226	15	3	NaN	NaN	NaN	9.686E-05	1	24192	71.896	71.786	5	41108			3176	635	2705	2766	3176	3176	176;177;178	
DPGVLDR	7	Unmodified	_DPGVLDR_			0	0	0	P31949	P31949	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	386.20341	770.392267	-0.36151	-0.00013962	0.12065	4.6597E-05	-0.24085	-9.3018E-05	386.203482717267	4.246	0.38127	4.246	4.1573	4.5386	0	843	46	0.757518876820989	0.0307609809519911	0.757518876820989	308.837343758427	0	12.541125956471						899	44	4	NaN	NaN	NaN	0.031031	1	760	58.286	42.787	1	465080			3177	935	2706	2767	3177	3177		
DPIDVNYEK	9	Unmodified	_DPIDVNYEK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.764029	1091.5135	0.77992	0.00042643	3.1127	0.0017019	3.8926	0.0021283	546.764778790975	6.6136	0.31922	6.6136	6.5072	6.8264	0	660	61	0.882057989648486	0.0406709767799367	0.882057989648486	357.758693629476	0	16.4959625015397						1170	37	6	NaN	NaN	NaN	7.3308E-05	1	6486	127.94	97.383	1	514550			3178	611	2707	2768	3178	3178		
DPILFPSFIHSQK	13	Unmodified	_DPILFPSFIHSQK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.276798	1527.80856	-0.45007	-0.00022966	-1.3535	-0.00069068	-1.8036	-0.00092034	510.276220698635	14.613	0.15959	14.613	14.533	14.693	0	693	31	0.85967808974117	0.0203609064422459	0.85967808974117	521.153018641822	0	12.3431642393666						353	19	3	NaN	NaN	NaN	0.052186	1	19360	41.824	33.35	1	100940			3179	501	2708	2769	3179	3179		
DPILFPSFIHSQK	13	Unmodified	_DPILFPSFIHSQK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.911559	1527.80856	2.0308	0.0015534	0.83665	0.00063997	2.8675	0.0021934	764.912135315599	14.595	0.15959	14.595	14.533	14.693	0	321	49	1.10999792833052	0.0320236055911389	1.10999792833052	448.603718780184	0	12.942284116279						586	19	4	NaN	NaN	NaN	0.0005236	1	19361	53.028	42.777	1	156930			3180	501	2708	2769	3180	3180		
DPIPYLPPLEK	11	Unmodified	_DPIPYLPPLEK_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.358096	1280.70164	0.70833	0.00045429	-1.2701	-0.00081456	-0.56172	-0.00036026	641.357196052768	14.746	0.38132	14.746	14.631	15.012	0	531	70	0.969216233931596	0.0464905228909541	0.969216233931596	392.3849337181	0	18.8215798543613						1246	44	4	NaN	NaN	NaN	0.0083908	1	11788	54.584	47.026	1	762230			3181	586	2709	2770	3181	3181		
DPIVMGVTVEAGQVK	15	Unmodified	_DPIVMGVTVEAGQVK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.913441	1541.81233	1.7018	0.0013136	2.876	0.00222	4.5778	0.0035336	771.915459723912	12.564	0.1596	12.564	12.52	12.68	0	312	40	1.11600111266355	0.026003062393495	1.11600111266355	450.993100996246	0	10.5082348137198						444	19	4	NaN	NaN	NaN	1.2889E-11	1	19784	112.7	98.905	1	100840			3182	288	2710	2771	3182	3182		
DPIYFTGLASEPGAR	15	Unmodified	_DPIYFTGLASEPGAR_			0	0	0	Q99523	Q99523	Q99523	SORT1	Sortilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.399012	1592.78347	1.833	0.0014616	2.6152	0.0020854	4.4482	0.003547	797.400813022331	13.487	0.10639	13.487	13.434	13.54	0	273	25	1.14198628764525	0.0159765819712272	1.14198628764525	461.362654550961	0	6.4545418352572						157	13	3	NaN	NaN	NaN	0.0017693	1	21354	47.57	38.309	1	31660			3183	2646	2711	2772	3183	3183		
DPLELFR	7	Unmodified	_DPLELFR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.242535	888.470518	-1.392	-0.00061978	-1.2589	-0.0005605	-2.6509	-0.0011803	445.241948167417	14.036	0.21279	14.036	13.948	14.161	0	738	34	0.829104889055312	0.0224484086173647	0.829104889055312	337.237418329658	0	9.13086325706649						339	25	3	NaN	NaN	NaN	0.01605	1	2131	66.087	42.778	1	80530			3184	1881	2712	2773	3184	3184		
DPLLASGTDGVGTK	14	Unmodified	_DPLLASGTDGVGTK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.846081	1329.67761	1.8326	0.0012203	0.79135	0.00052692	2.624	0.0017472	666.348010503684	7.8818	0.27501	7.8818	7.8108	8.0858	0	495	85	0.993446994398923	0.0565306657497275	0.993446994398923	402.036594891645	0	22.8773115154767						649	32	2	NaN	NaN	NaN	5.911E-17	1	13280	156.14	115.64	1	458340			3185	801	2713	2774	3185	3185		
DPLLLAIIPK	10	Unmodified	_DPLLLAIIPK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.854993	1091.69543	-0.2619	-0.00014322	-0.50143	-0.00027421	-0.76333	-0.00041743	546.854586883073	18.594	0.18621	18.594	18.497	18.683	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	369.290703678978	0	9.87561169890785						429	22	3	NaN	NaN	NaN	0.00095772	1	6510	69.716	63.485	1	168420			3186	2947	2714	2775	3186	3186		
DPLQVHLPLR	10	Unmodified	_DPLQVHLPLR_			0	0	0	Q8NE86	Q8NE86	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	396.568024	1186.68224	-2.3399	-0.00092793	-0.10131	-4.0176E-05	-2.4412	-0.00096811	396.568322700994	11.483	0.088671	11.483	11.447	11.536	0	885	13	0.728786607772777	0.0082172361023336	0.728786607772777	442.940928611768	0	4.99426052972234						67	11	2	NaN	NaN	NaN	0.021537	1	9074	27.736	23.534	1	14039			3187	2309	2715	2776	3187	3187		
DPLTLFEEK	9	Unmodified	_DPLTLFEEK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.284597	1090.55464	0.083898	4.5832E-05	-1.2719	-0.0006948	-1.188	-0.00064896	546.283867356918	14.01	0.24826	14.01	13.868	14.116	0	642	52	0.894250814548268	0.0345487443998951	0.894250814548268	362.708042986437	0	14.0129673521793						476	29	3	NaN	NaN	NaN	8.9247E-05	1	6477	90.761	68.375	1	121340			3188	1108	2716	2777	3188	3188		
DPLVIELGQK	10	Unmodified	_DPLVIELGQK_			0	0	0	Q9NYL4	Q9NYL4	Q9NYL4	FKBP11	Peptidyl-prolyl cis-trans isomerase FKBP11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.321514	1110.62847	-0.38589	-0.00021468	-0.71285	-0.00039657	-1.0987	-0.00061125	556.321159774067	12.024	0.1685	12.024	11.979	12.148	0	633	31	0.900343422309015	0.0203016545312636	0.900343422309015	365.096840522984	0	8.23249189486444						291	20	3	NaN	NaN	NaN	0.00031677	1	7011	115.86	106.47	1	100110			3189	3118	2717	2778	3189	3189		
DPLVNLINK	9	Unmodified	_DPLVNLINK_			0	0	0	Q8WTV0	Q8WTV0	Q8WTV0	SCARB1	Scavenger receptor class B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.303124	1024.5917	-1.0934	-0.00056126	-0.69785	-0.00035821	-1.7913	-0.00091946	513.303021548536	11.979	0.1596	11.979	11.908	12.068	0	693	28	0.85967808974117	0.0183235429829339	0.85967808974117	348.965275616979	0	7.43799371372177						178	19	2	NaN	NaN	NaN	0.015749	1	4865	65.156	38.7	1	72957			3190	2362	2718	2779	3190	3190		
DPLYIGLR	8	Unmodified	_DPLYIGLR_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.77146	945.528367	-1.024	-0.00048514	-0.82973	-0.0003931	-1.8537	-0.00087824	473.771077207572	11.802	0.24828	11.802	11.74	11.988	0	729	37	0.835224628594324	0.0244738587568686	0.835224628594324	339.414505929604	0	9.94556720882827						530	29	4	NaN	NaN	NaN	0.0006429	1	3170	84.699	65.212	1	253060			3191	1106	2719	2780	3191	3191		
DPNAFLFDHLLTLK	14	Unmodified	_DPNAFLFDHLLTLK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.631241	1642.87189	-0.79434	-0.0004358	0.18535	0.00010169	-0.609	-0.00033411	548.631113748727	18.541	0.1064	18.541	18.497	18.603	0	696	169	0.857641857947968	0.113910727770201	0.857641857947968	519.59191624033	0	69.0114326556578						881	13	4	NaN	NaN	NaN	0.0015263	1	22840	79.795	78.832	1	270610			3192	2115	2720	2781	3192	3192		
DPNAFLFDHLLTLK	14	Unmodified	_DPNAFLFDHLLTLK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.443223	1642.87189	1.5544	0.0012784	0.25417	0.00020904	1.8085	0.0014874	822.443399044526	18.541	0.21286	18.541	18.47	18.683	0	300	58	1.12400150285141	0.0379887953176345	1.12400150285141	453.977443343954	0	15.3434458319371						640	25	5	NaN	NaN	NaN	2.339E-24	1	22842	253.72	218.39	1	379060			3193	2115	2720	2781	3193	3193		
DPNIVIAK	8	Unmodified	_DPNIVIAK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.258185	868.501818	-2.0534	-0.00089378	0.86012	0.00037437	-1.1933	-0.00051941	435.258706606299	6.4895	0.40789	6.4895	6.3565	6.7644	0	789	46	0.794378096728713	0.0306754124372791	0.794378096728713	323.225334347799	0	12.4815506395844						792	47	4	NaN	NaN	NaN	0.0063831	1	1845	49.325	41.975	1	364590			3194	904	2721	2782	3194	3194		
DPNNSLTLWVIDQGLK	16	Unmodified	_DPNNSLTLWVIDQGLK_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.978158	1811.94176	1.0954	0.00099346	-2.5466	-0.0023097	-1.4513	-0.0013163	906.975650871152	18.727	0.13301	18.727	18.639	18.772	0	291	37	1.12999890578964	0.0239813645434503	1.12999890578964	456.043464476004	0	9.67836739772304						286	16	4	NaN	NaN	NaN	2.3174E-09	1	27529	153.52	144.71	1	69747			3195	2886	2722	2783	3195	3195		
DPNTYFIVGTAMVYPEEAEPK	21	Unmodified	_DPNTYFIVGTAMVYPEEAEPK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1186.06176	2370.10896	0.75044	0.00089007	-1.1982	-0.0014211	-0.44772	-0.00053103	1186.56254230861	17.513	0.14189	17.513	17.45	17.592	0	69	61	1.27715511956461	0.0395921875066181	1.27715511956461	514.509484199252	0	15.9499466120407						746	17	5	NaN	NaN	NaN	1.8179E-07	1	36209	115.29	97.48	1	174600			3196	1884	2723	2784	3196	3196		
DPPHNNFFFFDGMK	14	Unmodified	_DPPHNNFFFFDGMK_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.589047	1711.74531	-1.2751	-0.00072881	-1.2388	-0.00070807	-2.5138	-0.0014369	571.588511431398	15.606	0.15066	15.606	15.553	15.704	0	759	76	0.814815566123307	0.0510404290064799	0.814815566123307	493.480196862599	0	30.9118308501455						768	18	4	NaN	NaN	NaN	0.00016598	1	24803	56.938	38.126	1	167010			3197	3172	2724	2785	3197	3197		
DPPHNNFFFFDGMK	14	Unmodified	_DPPHNNFFFFDGMK_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.879933	1711.74531	2.0268	0.0017368	1.2763	0.0010937	3.3032	0.0028304	857.382653400674	15.615	0.14184	15.615	15.562	15.704	0	333	34	1.10198982404297	0.0220329079288653	1.10198982404297	444.937264144436	0	8.89596397455784						298	17	3	NaN	NaN	NaN	0.032389	1	24804	27.357	23.111	1	60124			3198	3172	2724	2785	3198	3198		
DPPIYSVGAFENFR	14	Unmodified	_DPPIYSVGAFENFR_			0	0	0	Q8IXT5	Q8IXT5	Q8IXT5	RBM12B	RNA-binding protein 12B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.39373	1610.77291	1.2638	0.0010191	1.4213	0.0011461	2.6851	0.0021653	806.395136622918	15.712	0.24829	15.712	15.597	15.845	0	375	37	1.07392668217569	0.0240773390598485	1.07392668217569	433.824794889627	0	9.72631265475724						320	29	3	NaN	NaN	NaN	2.4381E-06	1	21914	87.573	69.475	1	84374			3199	2214	2725	2786	3199	3199		
DPPLAAVTTAVQELLR	16	Unmodified	_DPPLAAVTTAVQELLR_			0	0	0	Q15477	Q15477	Q15477	SKIV2L	Helicase SKI2W	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.477794	1692.94104	0.70759	0.00059967	-1.3993	-0.0011859	-0.6917	-0.0005862	847.475934149401	20.208	0.026622	20.208	20.19	20.217	0	306	31	1.12000185836644	0.0200009774591183	1.12000185836644	452.250120339579	0	8.07627629831654						53	4	2	NaN	NaN	NaN	0.068497	1	24296	23.931	20.426	1	13437			3200	1853	2726	2787	3200	3200		
DPPMFIPTPVDR	12	Unmodified	_DPPMFIPTPVDR_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.850113	1383.68567	0.91875	0.00063656	-0.70754	-0.00049022	0.21121	0.00014634	692.848204045408	13.966	0.20395	13.966	13.868	14.072	0	510	67	0.983355730988811	0.0444046531951731	0.983355730988811	397.792974276635	0	17.9628373635129						631	24	4	NaN	NaN	NaN	0.00043973	1	14944	68.49	64.883	1	151260			3201	2422	2727	2788	3201	3201		
DPQGLGLHFYK	11	Unmodified	_DPQGLGLHFYK_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.555784	1273.64552	-1.1187	-0.00047606	-1.755	-0.00074685	-2.8737	-0.0012229	425.555064182579	10.073	0.15073	10.073	10.002	10.152	0	861	28	0.745211914437924	0.0184668793388617	0.745211914437924	452.568875155242	0	11.2149774421144						279	18	3	NaN	NaN	NaN	0.041723	1	11594	28.096	25.937	1	80136			3202	352	2728	2789	3202	3202		
DPQVLFAGYK	10	Unmodified	_DPQVLFAGYK_			0	0	0	P52435;Q9GZM3;Q9H1A7	P52435	P52435	POLR2J;POLR2J2;POLR2J3	DNA-directed RNA polymerase II subunit RPB11-a;DNA-directed RNA polymerase II subunit RPB11-b1;DNA-directed RNA polymerase II subunit RPB11-b2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.300581	1136.58661	1.3473	0.000767	-0.39608	-0.00022549	0.95119	0.00054151	569.300333702801	11.332	0.14193	11.332	11.252	11.394	0	582	34	0.934820374997243	0.0222838959578864	0.934820374997243	378.971395497175	0	9.03377736958174						310	17	3	NaN	NaN	NaN	0.0074796	1	7711	57.032	43.038	1	95377			3203	1212	2729	2790	3203	3203		
DPSASPGDAGEQAIR	15	Unmodified	_DPSASPGDAGEQAIR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.844601	1469.67465	2.5177	0.0018526	-2.0724	-0.0015249	0.4453	0.00032767	735.842828057554	5.1238	0.22171	5.1238	5.0617	5.2835	0	516	46	0.979317271586824	0.0302863591438532	0.979317271586824	395.929915546416	0	12.2445258201199						809	26	4	NaN	NaN	NaN	8.4744E-13	1	17565	151.52	130.37	1	335000			3204	753	2730	2791	3204	3204		
DPSGLLISVIR	11	Unmodified	_DPSGLLISVIR_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.348063	1168.68157	-0.50751	-0.00029707	-0.60787	-0.00035581	-1.1154	-0.00065288	585.347721918298	16.812	0.14188	16.812	16.759	16.901	0	564	28	0.946969335010767	0.0182196558414446	0.946969335010767	383.770140148365	0	7.38372365103731						184	17	2	NaN	NaN	NaN	0.0054826	1	8585	62.271	56.775	1	41344			3205	2471	2731	2792	3205	3205		
DPSQIDNNEPYMK	13	Unmodified	_DPSQIDNNEPYMK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.843213	1549.67187	2.3397	0.0018153	0.016267	1.2621E-05	2.356	0.0018279	775.843256971421	6.8796	0.12413	6.8796	6.8353	6.9594	0	423	79	1.04178812298108	0.0523406388660725	1.04178812298108	420.98350599754	0	21.1506976993925						571	15	4	NaN	NaN	NaN	2.4135E-05	1	20026	95.656	94.604	1	141200			3206	1655	2732	2793	3206	3206		
DPSQQELPR	9	Unmodified	_DPSQQELPR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.26727	1068.51999	1.5954	0.00085395	-0.5409	-0.00028953	1.0545	0.00056443	535.267117237434	4.2815	0.3192	4.2815	4.1573	4.4765	0	690	55	0.86171403876517	0.036644552172756	0.86171403876517	349.601035657577	0	14.8668500389776						989	37	3	NaN	NaN	NaN	1.6449E-12	1	5916	170.95	136.02	1	369960			3207	1127	2733	2794	3207	3207		
DPSSGQEVATPPVPQLQVCEPK	22	Unmodified	_DPSSGQEVATPPVPQLQVCEPK_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1182.08101	2362.14748	1.3519	0.0015981	-1.3599	-0.0016076	-0.008027	-9.4885E-06	1182.58058947424	12.76	0.079829	12.76	12.724	12.804	0	66	37	1.27913350869533	0.0237422986363811	1.27913350869533	515.316617387007	0	9.5649132315915						204	10	4	NaN	NaN	NaN	0.00047668	1	36149	60.324	58.222	1	31933			3208	3269	2734	2795	3208	3208		
DPTEHIPEIILNNFTTR	17	Unmodified	_DPTEHIPEIILNNFTTR_			0	0	0	Q9H9Y2	Q9H9Y2	Q9H9Y2	RPF1	Ribosome production factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.681211	2009.0218	-1.4864	-0.00099693	-0.37055	-0.00024852	-1.857	-0.0012454	671.015252011716	16.856	0.15963	16.856	16.785	16.945	0	684	19	0.86578508874114	0.0122131503988969	0.86578508874114	523.726070672485	0	7.38791341191461						285	19	4	NaN	NaN	NaN	0.0017144	1	31796	41.317	35.619	1	56345			3209	2940	2735	2796	3209	3209		
DPTPSFYDLWAQEDPNAVLGR	21	Unmodified	_DPTPSFYDLWAQEDPNAVLGR_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1196.06622	2390.11789	-0.37746	-0.00045147	0.32419	0.00038776	-0.053267	-6.371E-05	1196.56867631188	19.126	0.062061	19.126	19.1	19.162	0	66	28	1.27913350869533	0.0178055038448577	1.27913350869533	515.281330942621	0	7.17270219012585						151	8	4	NaN	NaN	NaN	0.014977	1	36300	22.039	20.191	1	27132			3210	1723	2736	2797	3210	3210		
DPTVHDDVLELEMDELNRHECMAPLTALVK	30	Unmodified	_DPTVHDDVLELEMDELNRHECMAPLTALVK_			0	0	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	873.421733	3489.65783	1.6758	0.0014637	-0.44983	-0.0003929	1.2259	0.0010708	873.923177806242	17.734	0.097536	17.734	17.699	17.796	0	414	37	1.04781950764076	0.0241272072846639	1.04781950764076	842.65743418731	0	19.403122805355						498	12	7	NaN	NaN	NaN	7.7417E-10	1	38650	55.804	55.679	1	127690			3211	1465	2737	2798	3211	3211		
DPTVHDDVLELEMDELNRHECMAPLTALVK	30	Oxidation (M)	_DPTVHDDVLELEM(Oxidation (M))DELNRHECMAPLTALVK_	DPTVHDDVLELEM(0.816)DELNRHECM(0.184)APLTALVK	DPTVHDDVLELEM(6.5)DELNRHECM(-6.5)APLTALVK	0	1	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	877.420462	3505.65274	0.9436	0.00082793	0.61338	0.00053819	1.557	0.0013661	877.922080179657	16.36	0.097522	16.36	16.315	16.413	0	405	28	1.05384839605172	0.018084171566231	1.05384839605172	847.490506470921	0	14.5430441201904						214	12	4	NaN	NaN	NaN	0.01519	1	38652	41.261	41.188	2	40605			3212	1465	2737	2799	3212	3212	524	
DPVHTVSLQQFIYEK	15	Unmodified	_DPVHTVSLQQFIYEK_			0	0	0	Q9UI26	Q9UI26	Q9UI26	IPO11	Importin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.98071	1802.9203	-2.6994	-0.001625	0.077338	4.6556E-05	-2.622	-0.0015784	602.314614107975	13.753	0.07981	13.753	13.708	13.788	0	792	22	0.792332785124922	0.0143191751131978	0.792332785124922	479.669102894419	0	8.66866297808542						132	10	3	NaN	NaN	NaN	1.7086E-05	1	27293	78.043	76.059	1	29943			3213	3233	2738	2800	3213	3213		
DPVLAPAVGADLLDYCLAR	19	Unmodified	_DPVLAPAVGADLLDYCLAR_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.02478	2028.03501	0.61868	0.00062797	-0.38907	-0.00039491	0.22961	0.00023306	1015.52605668554	18.878	0.09752	18.878	18.843	18.94	0	159	37	1.21767724410157	0.023843381101516	1.21767724410157	491.0306180972	0	9.61488786664705						210	12	3	NaN	NaN	NaN	2.8135E-05	1	32119	90.376	87.829	1	48455			3214	253	2739	2801	3214	3214		
DPVPGYSVPAAEHSTITAWGK	21	Unmodified	_DPVPGYSVPAAEHSTITAWGK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.04202	2182.06948	0.1464	0.00015988	-1.7919	-0.0019569	-1.6455	-0.001797	1092.54182864526	11.882	0.12417	11.882	11.811	11.935	0	96	76	1.2593374219024	0.0495071946217644	1.2593374219024	507.586358543871	0	19.9542840566296						489	15	3	NaN	NaN	NaN	0.0013012	1	34476	66.485	59.63	1	87629			3215	1067	2740	2802	3215	3215		
DPVPGYSVPAAEHSTITAWGK	21	Unmodified	_DPVPGYSVPAAEHSTITAWGK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.363771	2182.06948	0.28435	0.00020711	-0.91914	-0.00066947	-0.63479	-0.00046236	728.697518508541	11.882	0.18624	11.882	11.793	11.979	0	567	121	0.944945209309785	0.0810605630756276	0.944945209309785	571.300296676305	0	49.0080517659646						1644	22	6	NaN	NaN	NaN	0.020908	1	34477	47.844	43.994	1	523450			3216	1067	2740	2802	3216	3216		
DPVQEAWAEDVDLR	14	Unmodified	_DPVQEAWAEDVDLR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.889009	1641.76346	2.1119	0.0017357	0.55971	0.00046002	2.6716	0.0021958	821.88993457403	14.001	0.45219	14.001	13.815	14.267	0	384	91	1.06790610341098	0.0601768081435361	1.06790610341098	431.323283129539	0	24.3051878567055						3327	52	6	NaN	NaN	NaN	4.1552E-17	1	22799	193.34	166.87	1	2957800			3217	699	2741	2803	3217	3217		
DPVSIEER	8	Unmodified	_DPVSIEER_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.737814	943.461075	0.4662	0.00022039	0.81202	0.00038387	1.2782	0.00060426	472.737928739312	4.8755	0.18619	4.8755	4.8312	5.0174	0	726	40	0.837263974740672	0.0265115052801159	0.837263974740672	340.253918568875	0	10.7739540107561						355	22	3	NaN	NaN	NaN	0.00062137	1	3120	121.31	113.96	1	188300			3218	1280	2742	2804	3218	3218		
DPVYTFSISQNPFPIENR	18	Unmodified	_DPVYTFSISQNPFPIENR_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1062.52346	2123.03237	0.021152	2.2474E-05	2.908	0.0030898	2.9291	0.0031122	1063.02968203648	16.936	0.2483	16.936	16.892	17.14	0	174	94	1.20774045859593	0.061557451027864	1.20774045859593	486.875384402285	0	24.815602904335						998	29	4	NaN	NaN	NaN	3.7186E-10	1	33658	108.91	104.1	1	205960			3219	2334	2743	2805	3219	3219		
DPYSGSTISLFQAMQK	16	Unmodified	_DPYSGSTISLFQAMQK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.929819	1771.84509	1.7329	0.001537	5.4064	0.0047951	7.1393	0.0063321	886.936391147883	15.987	0.15962	15.987	15.916	16.076	0	315	61	1.11400032671325	0.0400019691286564	1.11400032671325	449.664022861632	0	16.1467155165464						522	19	3	NaN	NaN	NaN	4.9973E-07	1	26463	104.04	93.07	1	122850			3220	1816	2744	2806	3220	3220		
DPYTEQTISLFQAMK	15	Unmodified	_DPYTEQTISLFQAMK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.432195	1770.84984	1.4185	0.0012574	4.1244	0.003656	5.5428	0.0049133	886.435299283601	17.317	0.15963	17.317	17.273	17.433	0	303	58	1.12200181823275	0.0380097163166782	1.12200181823275	452.89578989982	0	15.3426137243025						404	19	2	NaN	NaN	NaN	0.0041029	1	26441	52.863	40.845	1	179460			3221	1816	2745	2807	3221	3221		
DPYTGQSVSLFQALK	15	Unmodified	_DPYTGQSVSLFQALK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.42777	1652.84099	2.2885	0.0018936	-1.701	-0.0014074	0.58752	0.00048613	827.427100067142	15.775	0.17736	15.775	15.712	15.89	0	360	88	1.08395544855938	0.0581108178411842	1.08395544855938	437.781007468228	0	23.4694261771799						910	21	5	NaN	NaN	NaN	5.6274E-17	1	23139	147.02	141.63	1	305270			3222	1816	2746	2808	3222	3222		
DQACYIFHHR	10	Unmodified	_DQACYIFHHR_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.540139	1345.59859	-0.1317	-5.9206E-05	-0.69525	-0.00031254	-0.82695	-0.00037175	449.539728100493	4.7603	0.079796	4.7603	4.7425	4.8223	0	873	19	0.737001551771189	0.0123189795795753	0.737001551771189	447.326256304505	0	7.47705754971582						89	10	2	NaN	NaN	NaN	0.020041	1	13763	27.736	25.937	1	22278			3223	2807	2747	2809	3223	3223		
DQADEAQYCQLVR	13	Unmodified	_DQADEAQYCQLVR_			0	0	0	O14874	O14874	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.359561	1594.70457	1.506	0.0012024	-1.0073	-0.00080418	0.49875	0.00039818	798.358573509024	8.5205	0.079816	8.5205	8.485	8.5648	0	438	25	1.03173026378327	0.0161003532377459	1.03173026378327	416.814886662913	0	6.50447810401118						139	10	3	NaN	NaN	NaN	0.028621	1	21412	30.349	29.467	1	25793			3224	122	2748	2810	3224	3224		
DQAENEDGAQENTFSMDPQLER	22	Unmodified	_DQAENEDGAQENTFSMDPQLER_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.022473	2523.04559	1.4015	0.0011801	1.1469	0.00096568	2.5483	0.0021457	842.357752311939	11.066	0.097522	11.066	11.021	11.119	0	564	34	0.946969335010767	0.0222623031474618	0.946969335010767	572.03472788632	0	13.4479650525709						247	12	4	NaN	NaN	NaN	0.00077	1	36933	31.905	31.094	1	46921			3225	1167	2749	2811	3225	3225		
DQAVENILVSPVVVASSLGLVSLGGK	26	Unmodified	_DQAVENILVSPVVVASSLGLVSLGGK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.149566	2550.42687	0.77757	0.00066183	0.51848	0.0004413	1.296	0.0011031	851.484458516441	20.208	0.035463	20.208	20.199	20.235	0	258	31	1.15196821829984	0.0199570013831343	1.15196821829984	695.827257953705	0	12.0546950243987						119	5	5	NaN	NaN	NaN	0.00027105	1	37035	61.319	59.005	1	37437			3226	1164	2750	2812	3226	3226		
DQDELNPYAAWR	12	Unmodified	_DQDELNPYAAWR_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.338955	1476.66336	0.84417	0.00062413	2.7304	0.0020187	3.5746	0.0026428	739.340150462003	12.405	0.097529	12.405	12.352	12.449	0	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	408.960938732954	0	9.77692465784804						219	12	3	NaN	NaN	NaN	0.001815	1	17783	74.849	55.525	1	50870			3227	211	2751	2813	3227	3227		
DQDGCLPEEVTGCK	14	Unmodified	_DQDGCLPEEVTGCK_			0	0	0	Q9BR61	Q9BR61	Q9BR61	ACBD6	Acyl-CoA-binding domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.337437	1606.66032	2.1882	0.00176	0.0010452	8.4066E-07	2.1892	0.0017609	804.337641036055	7.8729	0.088662	7.8729	7.8374	7.9261	0	426	25	1.03977710643793	0.0160892438574902	1.03977710643793	420.038860192569	0	6.49957342724389						167	11	3	NaN	NaN	NaN	0.0041475	1	21795	42.446	41.296	1	39055			3228	2701	2752	2814	3228	3228		
DQDILDLVGVLHDPETLLR	19	Unmodified	_DQDILDLVGVLHDPETLLR_			0	0	0	P08397	P08397	P08397	HMBS	Porphobilinogen deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.054826	2160.14265	-0.63396	-0.00045712	-0.22245	-0.0001604	-0.85641	-0.00061752	721.388793097833	20.049	0.026587	20.049	20.031	20.057	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	548.051821616483	0	9.81717735382711						69	4	4	NaN	NaN	NaN	0.00064856	1	34180	49.967	48.696	1	20487			3229	582	2753	2815	3229	3229		
DQDLEPGAPSMGAK	14	Unmodified	_DQDLEPGAPSMGAK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.327199	1414.63984	2.0341	0.0014408	-0.15637	-0.00011076	1.8778	0.0013301	708.326944632593	6.6668	0.23053	6.6668	6.587	6.8175	0	501	67	0.98941132619024	0.0444230789129696	0.98941132619024	400.155961593977	0	17.9664002107517						954	27	5	NaN	NaN	NaN	2.6296E-11	1	15914	148.76	129.5	1	407060			3230	565	2754	2816	3230	3230		
DQDLEPGAPSMGAK	14	Oxidation (M)	_DQDLEPGAPSM(Oxidation (M))GAK_	DQDLEPGAPSM(1)GAK	DQDLEPGAPSM(130)GAK	0	1	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.324656	1430.63476	2.7238	0.0019511	-1.393	-0.00099786	1.3308	0.00095326	716.323599773304	4.4943	0.15073	4.4943	4.4322	4.5829	0	534	55	0.967195187796614	0.0363712953515518	0.967195187796614	391.128561350271	0	14.7083573251708						441	18	3	NaN	NaN	NaN	2.8267E-05	1	16398	129.69	113.81	1	85456			3231	565	2754	2817	3231	3231	142	
DQDLTQEIAMEHFVK	15	Unmodified	_DQDLTQEIAMEHFVK_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.957576	1802.8509	0.42913	0.00025832	-0.83015	-0.00049972	-0.40102	-0.0002414	601.957300896656	12.839	0.10642	12.839	12.795	12.901	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	530.294860337653	0	12.3125775203494						320	13	5	NaN	NaN	NaN	2.5569E-06	1	27280	106.47	101.94	1	119010			3232	3283	2755	2818	3232	3232		
DQDLTQEIAMEHFVK	15	Unmodified	_DQDLTQEIAMEHFVK_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.432726	1802.8509	2.5228	0.0022766	1.5061	0.0013592	4.0289	0.0036358	902.432939234692	12.83	0.097532	12.83	12.795	12.893	0	270	34	1.14398322290989	0.0219662910275218	1.14398322290989	461.704905325242	0	8.86546595798075						168	12	2	NaN	NaN	NaN	3.4676E-05	1	27281	102.57	91.595	1	62005			3233	3283	2755	2818	3233	3233		
DQDQLQAWESEGLFQISQNK	20	Unmodified	_DQDQLQAWESEGLFQISQNK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.708266	2363.10297	0.78084	0.00061585	0.95703	0.00075482	1.7379	0.0013707	789.042611270156	17.566	0.070959	17.566	17.521	17.592	0	432	19	1.035754240522	0.0120702642695079	1.035754240522	625.898823357147	0	7.29397371338518						138	9	4	NaN	NaN	NaN	1.4187E-05	1	36154	74.62	71.179	1	27321			3234	1880	2756	2819	3234	3234		
DQDQLQAWESEGLFQISQNK	20	Unmodified	_DQDQLQAWESEGLFQISQNK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1182.55876	2363.10297	0.81993	0.00096962	1.7325	0.0020488	2.5524	0.0030184	1183.06098039783	17.557	0.09754	17.557	17.513	17.61	0	93	37	1.26131825079847	0.0237683228078447	1.26131825079847	508.138283266993	0	9.57537460515476						311	12	5	NaN	NaN	NaN	1.011E-07	1	36155	97.268	90.587	1	61023			3235	1880	2756	2819	3235	3235		
DQDTLIQHGIHDGLTVHLVIK	21	Unmodified	_DQDTLIQHGIHDGLTVHLVIK_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	588.822212	2351.25974	-0.58506	-0.0003445	-0.077477	-4.562E-05	-0.66254	-0.00039012	589.073030085331	13.407	0.0621	13.407	13.38	13.442	0	693	22	0.85967808974117	0.0142516439925704	0.85967808974117	692.68168006122	0	11.4831968177533						125	8	4	NaN	NaN	NaN	0.043239	1	36053	30.172	29.808	1	22664			3236	3216	2757	2820	3236	3236		
DQFLDTLQAHGHDVNSFVR	19	Unmodified	_DQFLDTLQAHGHDVNSFVR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	550.519896	2198.05048	0.046638	2.5675E-05	-0.76863	-0.00042314	-0.72199	-0.00039747	550.770371126319	12.742	0.10643	12.742	12.706	12.813	0	672	46	0.873923798053065	0.0304968767527163	0.873923798053065	704.447963970762	0	24.5827642910964						215	13	4	NaN	NaN	NaN	0.0016379	1	34651	30.172	28.071	1	48625			3237	1794	2758	2821	3237	3237		
DQFLDTLQAHGHDVNSFVR	19	Unmodified	_DQFLDTLQAHGHDVNSFVR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.690769	2198.05048	1.3049	0.00095743	-0.44345	-0.00032535	0.8615	0.00063208	734.024692164903	12.751	0.12416	12.751	12.706	12.83	0	534	34	0.967195187796614	0.0222345870481429	0.967195187796614	584.72544111958	0	13.4420940921502						375	15	5	NaN	NaN	NaN	1.0257E-10	1	34653	133.13	116.37	1	131390			3238	1794	2758	2821	3238	3238		
DQFTTTEVNMAR	12	Unmodified	_DQFTTTEVNMAR_			0	0	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.827366	1411.64018	2.1448	0.001516	0.31342	0.00022154	2.4582	0.0017375	706.827682505951	8.2366	0.21294	8.2366	8.1745	8.3874	0	480	79	1.00353128488872	0.052398509533186	1.00353128488872	405.874963447154	0	21.1924067158758						845	25	4	NaN	NaN	NaN	1.5854E-07	1	15801	152.17	134.7	1	292410			3239	1349	2759	2822	3239	3239		
DQGGELLSLR	10	Unmodified	_DQGGELLSLR_			0	0	0	P12081;P49590	P12081;P49590	P12081	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.290745	1086.56694	0.4523	0.00024618	-1.2234	-0.00066589	-0.77111	-0.00041971	544.290003896155	10.658	0.23053	10.658	10.569	10.8	0	660	40	0.882057989648486	0.0264269571469923	0.882057989648486	357.779015146769	0	10.7192620126311						519	27	3	NaN	NaN	NaN	0.0010865	1	6383	72.365	36.154	1	188260			3240	664;1138	2760	2823	3240	3240		
DQGSCGSCWAFGAVEAISDR	20	Unmodified	_DQGSCGSCWAFGAVEAISDR_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.9573	2171.90005	0.74812	0.00081318	0.7213	0.00078403	1.4694	0.0015972	1087.45961566119	16.688	0.12415	16.688	16.617	16.741	0	198	61	1.1918274123006	0.0397935554702979	1.1918274123006	480.390111976764	0	16.0395963132189						501	15	4	NaN	NaN	NaN	2.1558E-06	1	34333	78.75	77.656	1	97766			3241	566	2761	2824	3241	3241		
DQGSFTEVVSISNLGMAK	18	Unmodified	_DQGSFTEVVSISNLGMAK_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.96439	1881.91423	1.3642	0.001285	1.9442	0.0018314	3.3084	0.0031164	941.966900452259	16.138	0.079815	16.138	16.103	16.182	0	213	31	1.18187287897418	0.0199159054005791	1.18187287897418	476.84394423112	0	8.03536408449344						169	10	3	NaN	NaN	NaN	0.0039959	1	29185	36.059	31.242	1	37592			3242	657	2762	2825	3242	3242		
DQGTYEDYVEGLR	13	Unmodified	_DQGTYEDYVEGLR_			0	0	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.84681	1543.67907	1.6648	0.0012866	1.4666	0.0011335	3.1314	0.0024201	772.847923085929	11.811	0.23059	11.811	11.731	11.961	0	432	46	1.035754240522	0.0301777503680323	1.035754240522	418.559614584937	0	12.1951589179284						724	27	5	NaN	NaN	NaN	2.964E-54	1	19840	256.71	238.2	1	696410			3243	1309	2763	2826	3243	3243		
DQHSFELDEK	10	Unmodified	_DQHSFELDEK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.522808	1246.5466	-1.0174	-0.00042377	-0.26521	-0.00011047	-1.2826	-0.00053423	416.522777013742	5.2213	0.17736	5.2213	5.177	5.3544	0	879	28	0.732894652678068	0.0184823364857525	0.732894652678068	445.192181490143	0	11.2269773958104						264	21	3	NaN	NaN	NaN	0.0053076	1	10803	46.033	37.559	1	81683			3244	2029	2764	2827	3244	3244		
DQITAGNAAR	10	Unmodified	_DQITAGNAAR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.759612	1015.50467	0.84791	0.00043138	-1.3924	-0.00070842	-0.54453	-0.00027703	508.759218228743	2.6587	0.24829	2.6587	2.6232	2.8715	0	735	37	0.831145085810763	0.0244772608396998	0.831145085810763	337.423018740856	0	9.93712335432053						295	29	2	NaN	NaN	NaN	0.02877	1	4638	46.447	27.191	1	74580			3245	802	2765	2828	3245	3245		
DQIYDIFQK	9	Unmodified	_DQIYDIFQK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.295496	1168.57644	1.2198	0.00071396	-0.5162	-0.00030213	0.70362	0.00041183	585.2952678391	13.478	0.30147	13.478	13.398	13.7	0	603	55	0.920633820089869	0.0364974218210178	0.920633820089869	373.097763043619	0	14.7910126058066						831	35	3	NaN	NaN	NaN	1.1079E-08	1	8567	154.71	131.13	1	1128900			3246	1311	2766	2829	3246	3246		
DQIYEIFQK	9	Unmodified	_DQIYEIFQK_			0	0	0	Q14240	Q14240	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.303321	1182.59209	1.1904	0.00070509	-1.9643	-0.0011635	-0.77392	-0.00045839	592.302455167128	12.76	0.15075	12.76	12.671	12.822	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.402735139981	0	10.684620753464						414	18	4	NaN	NaN	NaN	6.7758E-06	1	8940	125.5	94.905	1	234980			3247	1739	2767	2830	3247	3247		
DQLAADMYNFMAK	13	Unmodified	_DQLAADMYNFMAK_			0	0	0	Q68EM7	Q68EM7	Q68EM7	ARHGAP17	Rho GTPase-activating protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.341794	1516.66904	1.0827	0.00082214	7.5758	0.0057526	8.6585	0.0065748	759.847958338078	16.023	0.15073	16.023	15.952	16.103	0	429	43	1.03776581230406	0.0281639553291928	1.03776581230406	419.43886914265	0	11.3831631701503						365	18	4	NaN	NaN	NaN	0.0038676	1	19025	58.889	53.739	1	82444			3248	2025	2768	2831	3248	3248		
DQLIYNLLK	9	Unmodified	_DQLIYNLLK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.324057	1118.63356	-1.0466	-0.00058644	-1.5797	-0.00088515	-2.6263	-0.0014716	560.323132245787	16.963	0.25718	16.963	16.821	17.078	0	624	28	0.906433495720521	0.0182651557513902	0.906433495720521	367.53417765981	0	7.40602485522606						270	30	3	NaN	NaN	NaN	0.0012821	1	7238	81.642	62.386	1	63610			3249	471	2769	2832	3249	3249		
DQLIYNLLK	9	Unmodified	_DQLIYNLLK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.324057	1118.63356	1.2822	0.00071845	-1.7199	-0.00096368	-0.43764	-0.00024522	560.322645278863	15.562	0.69166	15.562	15.491	16.182	1.7764E-15	618	70	0.910492137470517	0.0466582355403207	0.910492137470517	369.17984734974	0	18.9186480206608						2199	79	5	NaN	NaN	NaN	0.00389	1	7239	82.716	72.637	1	6195600			3250	471	2769	2832	3250	3250		
DQLLLGPTYATPK	13	Unmodified	_DQLLLGPTYATPK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.890292	1415.76603	1.3296	0.00094255	-1.2844	-0.00091051	0.045203	3.2044E-05	708.890991042447	11.731	0.19509	11.731	11.651	11.846	0	441	40	1.02971785871157	0.0261576594975734	1.02971785871157	416.454269488546	0	10.5790813332329						354	23	3	NaN	NaN	NaN	0.0043329	1	15973	78.864	57.776	1	193630			3251	1267	2770	2833	3251	3251		
DQLMFDLLK	9	Unmodified	_DQLMFDLLK_			0	0	0	Q9NR09	Q9NR09	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.796817	1121.57908	-0.4008	-0.00022517	-1.4449	-0.00081171	-1.8457	-0.0010369	561.796454438579	17.61	0.088658	17.61	17.575	17.663	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	364.229825690529	0	6.58703185508762						163	11	3	NaN	NaN	NaN	0.049468	1	7313	33.426	26.276	1	36731			3252	3008	2771	2834	3252	3252		
DQLPADECNK	10	Unmodified	_DQLPADECNK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.261327	1188.5081	2.2091	0.001315	-0.16227	-9.659E-05	2.0468	0.0012184	595.261376665898	3.0755	0.30147	3.0755	3.0134	3.3149	4.4409E-16	633	61	0.900343422309015	0.0406033237034125	0.900343422309015	364.803444986563	0	16.4517582934322						950	35	5	NaN	NaN	NaN	0.00096955	1	9108	79.059	59.571	1	704820			3253	1007	2772	2835	3253	3253		
DQLQEQLQALK	11	Unmodified	_DQLQEQLQALK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.356616	1312.69868	0.91063	0.00059861	0.60192	0.00039568	1.5126	0.00099429	657.356584841971	11.208	0.097519	11.208	11.172	11.27	0	507	37	0.985374541851584	0.0242274096445863	0.985374541851584	398.822814092177	0	9.80585887114711						233	12	3	NaN	NaN	NaN	3.1441E-05	1	12742	124.81	78.359	1	81392			3254	1782	2773	2836	3254	3254		
DQLQTFSEEHPVLLTEAPLNPR	22	Unmodified	_DQLQTFSEEHPVLLTEAPLNPR_			0	0	0	P61163	P61163	P61163	ACTR1A	Alpha-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	845.434365	2533.28127	0.32468	0.00027449	0.71969	0.00060845	1.0444	0.00088294	845.769099552301	14.817	0.16849	14.817	14.737	14.905	0	507	109	0.985374541851584	0.0726320978016614	0.985374541851584	595.220946731314	0	43.8738207457137						1349	20	5	NaN	NaN	NaN	4.0843E-30	1	36969	209.42	163.07	1	452920			3255	1332	2774	2837	3255	3255		
DQLVIPDGQEEEQEAAGEGR	20	Unmodified	_DQLVIPDGQEEEQEAAGEGR_			0	0	0	Q8NBJ4	Q8NBJ4	Q8NBJ4	GOLM1	Golgi membrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1085.49837	2168.98218	1.9048	0.0020676	-0.74688	-0.00081074	1.1579	0.0012569	1085.99926011186	10.17	0.07094	10.17	10.135	10.206	0	204	25	1.18784641916898	0.0159261604744738	1.18784641916898	478.78959010175	0	6.41941560997645						140	9	3	NaN	NaN	NaN	0.00036692	1	34290	40.372	39.43	1	24629			3256	2288	2775	2838	3256	3256		
DQMEYMLQNHVFPLFSSELGYMR	23	Unmodified	_DQMEYMLQNHVFPLFSSELGYMR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	945.769486	2834.28663	0.28115	0.0002659	-1.3702	-0.0012959	-1.089	-0.00103	946.101956490164	19.96	0.026599	19.96	19.942	19.969	0	489	55	0.997481546940468	0.0362758759796945	0.997481546940468	602.185004092625	0	21.8999425024949						76	4	4	NaN	NaN	NaN	0.04886	1	37962	15.78	15.676	1	10480			3257	429	2776	2839	3257	3257		
DQMQQQLNDYEQLLDVK	17	Unmodified	_DQMQQQLNDYEQLLDVK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.337004	2106.98918	-0.27368	-0.00019249	-0.24202	-0.00017022	-0.5157	-0.00036271	703.671133503598	17.309	0.079795	17.309	17.264	17.344	0	570	28	0.942920803299286	0.0182221791516658	0.942920803299286	570.204736216964	0	11.019348411996						218	10	4	NaN	NaN	NaN	0.00023264	1	33415	105.08	102.18	1	54536			3258	784	2777	2840	3258	3258		
DQMQQQLNDYEQLLDVK	17	Unmodified	_DQMQQQLNDYEQLLDVK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.50187	2106.98918	1.1132	0.0011739	1.0677	0.0011259	2.1809	0.0022998	1055.00469282833	17.3	0.15076	17.3	17.255	17.406	0	114	118	1.24744674793813	0.0774114415609999	1.24744674793813	502.907038679482	0	31.2083533022148						1577	18	5	NaN	NaN	NaN	3.5886E-34	1	33417	204.33	196.75	1	480120			3259	784	2777	2840	3259	3259		
DQMSHLFNVAHTLR	14	Unmodified	_DQMSHLFNVAHTLR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.947346	1667.82021	0.05664	3.1545E-05	0.29883	0.00016643	0.35547	0.00019798	557.281553583101	11.19	0.19509	11.19	11.101	11.296	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	535.548780542103	0	9.85066966355828						243	23	4	NaN	NaN	NaN	0.010623	1	23570	54.199	53.318	1	63314			3260	867	2778	2841	3260	3260		
DQNESLDEEMFYK	13	Unmodified	_DQNESLDEEMFYK_			0	0	0	Q96AC1	Q96AC1	Q96AC1	FERMT2	Fermitin family homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.345785	1646.67702	1.3797	0.0011373	2.7952	0.0023042	4.1749	0.0034415	824.347678844006	11.589	0.11533	11.589	11.545	11.66	0	393	31	1.0618830335572	0.0200782861239661	1.0618830335572	428.879870408152	0	8.10934206380324						261	14	3	NaN	NaN	NaN	0.0005166	1	22929	80.623	80.435	1	66095			3261	2472	2779	2842	3261	3261		
DQNIFVQK	8	Unmodified	_DQNIFVQK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.263999	990.513445	-0.12941	-6.4223E-05	-0.092866	-4.6086E-05	-0.22228	-0.00011031	496.263899071545	6.4451	0.16846	6.4451	6.3476	6.5161	0	732	46	0.833184998970724	0.030590200468438	0.833184998970724	338.365243782773	0	12.42300407671						316	20	3	NaN	NaN	NaN	0.0057157	1	4064	84.699	64.04	1	104610			3262	1228	2780	2843	3262	3262		
DQNYPGAIAIHHPNVAEK	18	Unmodified	_DQNYPGAIAIHHPNVAEK_			0	0	0	CON__P15636	CON__P15636	CON__P15636			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	494.251157	1972.97552	0.15895	7.8561E-05	0.74451	0.00036797	0.90346	0.00044653	494.502181039075	6.7644	0.266	6.7644	6.6668	6.9328	0	744	58	0.82502364452135	0.0387637552095295	0.82502364452135	665.506130994548	0	31.2688211103095						1136	31	6	NaN	NaN	NaN	7.1552E-05	1	31168	129.04	128.31	1	1263400		+	3263	31	2781	2844	3263	3263		
DQNYPGAIAIHHPNVAEK	18	Unmodified	_DQNYPGAIAIHHPNVAEK_			0	0	0	CON__P15636	CON__P15636	CON__P15636			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.495038	1972.97552	2.9326	0.0028959	-1.8178	-0.001795	1.1148	0.0011009	987.994885845179	6.7644	0.25713	6.7644	6.6757	6.9328	0	234	100	1.16792504164217	0.0658446009362337	1.16792504164217	471.05730447737	0	26.5569956337259						1656	30	5	NaN	NaN	NaN	1.7881E-14	1	31169	135.89	124.21	1	627270		+	3264	31	2781	2844	3264	3264		
DQNYPGAIAIHHPNVAEK	18	Unmodified	_DQNYPGAIAIHHPNVAEK_			0	0	0	CON__P15636	CON__P15636	CON__P15636			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.665784	1972.97552	1.8119	0.0011934	1.5626	0.0010292	3.3745	0.0022227	659.001393502038	6.7555	0.46997	6.7555	6.658	7.128	0	591	166	0.928742107665821	0.111775717488523	0.928742107665821	561.880045830869	0	67.6232344230351						2590	54	6	NaN	NaN	NaN	4.4776E-05	1	31171	128.68	100.35	1	2759000		+	3265	31	2781	2844	3265	3265		
DQPPNSVEGLLNALR	15	Unmodified	_DQPPNSVEGLLNALR_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.928468	1621.84238	0.87657	0.00071171	-1.3048	-0.0010594	-0.42825	-0.00034771	811.928190245008	18.213	0.1064	18.213	18.178	18.284	0	423	61	1.04178812298108	0.0402508992087349	1.04178812298108	420.817581081881	0	16.2588588483055						448	13	4	NaN	NaN	NaN	4.2779E-08	1	22248	123.92	108.04	1	114870			3266	3057	2782	2845	3266	3266		
DQSAVVVQGLPEGVAFK	17	Unmodified	_DQSAVVVQGLPEGVAFK_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.467426	1742.9203	2.4386	0.0021276	0.43068	0.00037575	2.8693	0.0025033	872.467607971864	14.285	0.1862	14.285	14.214	14.4	0	309	139	1.11800162319566	0.0918150486616276	1.11800162319566	451.337301686664	0	37.0657389554761						1037	22	3	NaN	NaN	NaN	4.2514E-10	1	25691	141.87	133.12	1	389000			3267	1459	2783	2846	3267	3267		
DQTDFEHR	8	Unmodified	_DQTDFEHR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.228145	1046.44174	0.65868	0.0003453	2.557	0.0013404	3.2156	0.0016857	524.229033417802	2.4902	0.22166	2.4902	2.4636	2.6853	0	726	19	0.837263974740672	0.0122352270963073	0.837263974740672	339.772716958632	0	4.96521584414978						210	26	3	NaN	NaN	NaN	0.053079	1	5385	20.234	12.883	1	43585			3268	578	2784	2847	3268	3268		
DQTPDENDQVVVK	13	Unmodified	_DQTPDENDQVVVK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.854635	1485.69472	2.6495	0.0019708	-2.6639	-0.0019815	-0.014424	-1.0729E-05	743.852999067513	5.1061	0.23058	5.1061	5.0529	5.2835	0	471	34	1.00957851518677	0.0221701170870099	1.00957851518677	408.123237557448	0	8.9622944887098						445	27	4	NaN	NaN	NaN	0.00030749	1	18084	78.864	69.887	1	145590			3269	78	2785	2848	3269	3269		
DQTVIQNTDGNNNEAWAK	18	Unmodified	_DQTVIQNTDGNNNEAWAK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.46413	2016.91371	3.4461	0.0034787	-2.2557	-0.0022771	1.1904	0.0012016	1009.46218747779	7.7309	0.19524	7.7309	7.6865	7.8818	0	252	49	1.15595906938629	0.0319224291995859	1.15595906938629	466.16013029574	0	12.8732618214034						662	23	5	NaN	NaN	NaN	2.4436E-10	1	31918	97.949	83.587	1	205910		+	3270	37	2786	2849	3270	3270		
DQVAIHEAMEQQTISITK	18	Unmodified	_DQVAIHEAMEQQTISITK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.51478	2041.015	1.2211	0.0012474	-0.18621	-0.00019021	1.0349	0.0010572	1022.01701911764	10.223	0.044323	10.223	10.206	10.25	0	156	28	1.21966378336455	0.0178788550489832	1.21966378336455	491.810426238875	0	7.20936986260847						112	6	3	NaN	NaN	NaN	0.012138	1	32359	40.53	39.791	1	16416			3271	1757	2787	2850	3271	3271		
DQVANSAFVER	11	Unmodified	_DQVANSAFVER_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.304384	1234.59421	2.1148	0.0013076	0.6414	0.00039658	2.7562	0.0017042	618.304834254845	6.1879	0.30151	6.1879	6.0638	6.3653	0	603	97	0.920633820089869	0.0648214595008385	0.920633820089869	372.864923981824	0	26.2532703467397						1354	35	5	NaN	NaN	NaN	2.9288E-30	1	10454	250.16	175.89	1	2084300			3272	567	2788	2851	3272	3272		
DQVGILAGWFK	11	Unmodified	_DQVGILAGWFK_			0	0	0	Q5PRF9	Q5PRF9	Q5PRF9	SAMD4B	Protein Smaug homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.334956	1232.65536	-0.37476	-0.00023135	1.0944	0.00067559	0.7196	0.00044424	617.336391828846	18.24	0.062059	18.24	18.213	18.275	0	558	37	0.951016745717027	0.0242777450705638	0.951016745717027	385.176977560993	0	9.83287466849561						112	8	3	NaN	NaN	NaN	0.0084342	1	10405	36.24	32.347	1	19333			3273	1973	2789	2852	3273	3273		
DQVIYPDSVEDMQR	14	Unmodified	_DQVIYPDSVEDMQR_			0	0	0	P33897	P33897	P33897	ABCD1	ATP-binding cassette sub-family D member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.888152	1693.76175	2.509	0.0021274	-0.44114	-0.00037403	2.0679	0.0017533	847.887337205572	10.418	0.15075	10.418	10.365	10.516	0	351	34	1.08996939197032	0.0220450526465417	1.08996939197032	440.121453124187	0	8.90162666628282						327	18	4	NaN	NaN	NaN	0.01469	1	24304	38.584	32.556	1	71594			3274	949	2790	2853	3274	3274		
DQVLHEHIQR	10	Unmodified	_DQVLHEHIQR_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.558187	1273.65273	-0.32738	-0.00013932	-0.33408	-0.00014217	-0.66146	-0.00028149	425.558504935361	3.1641	0.15077	3.1641	3.1375	3.2883	0	831	22	0.76571780291124	0.0143451227380655	0.76571780291124	465.022112149639	0	8.71182470792616						216	18	3	NaN	NaN	NaN	0.0048794	1	11599	46.447	32.452	1	52049			3275	1784	2791	2854	3275	3275		
DQVLQNLGSVESYSEEK	17	Unmodified	_DQVLQNLGSVESYSEEK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.960359	1923.90617	1.9774	0.0019041	0.99791	0.00096095	2.9753	0.0028651	963.462807625346	12.29	0.13302	12.29	12.245	12.378	0	246	67	1.1599488233373	0.0439054229632809	1.1599488233373	467.92360609371	0	17.7114571149265						663	16	5	NaN	NaN	NaN	1.0429E-06	1	30143	96.27	90.883	1	172730			3276	2140	2792	2855	3276	3276		
DQVTAQEIFQDNHEDGPTAK	20	Unmodified	_DQVTAQEIFQDNHEDGPTAK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.01419	2242.01382	1.3718	0.0015392	-1.4663	-0.0016452	-0.094474	-0.000106	1122.51381460092	9.1415	0.062059	9.1415	9.1149	9.177	0	69	52	1.27715511956461	0.0336464433954791	1.27715511956461	514.680851468123	0	13.5591831175235						262	8	3	NaN	NaN	NaN	2.6047E-05	1	35113	53.193	51.46	1	45890			3277	674	2793	2856	3277	3277		
DQVTAQEIFQDNHEDGPTAK	20	Unmodified	_DQVTAQEIFQDNHEDGPTAK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.345216	2242.01382	1.3979	0.0010461	0.75218	0.00056289	2.1501	0.001609	748.680150264766	9.1415	0.20397	9.1415	9.0883	9.2923	0	564	82	0.946969335010767	0.0546817245210852	0.946969335010767	572.427289490712	0	33.054197422271						1257	24	6	NaN	NaN	NaN	3.8106E-30	1	35114	269.55	232.04	1	783450			3278	674	2793	2856	3278	3278		
DQVVILHHMLSK	12	Unmodified	_DQVVILHHMLSK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.930745	1418.7704	-1.5598	-0.00073926	-0.67024	-0.00031765	-2.2301	-0.0010569	473.930626134144	8.6623	0.15095	8.6623	8.6268	8.7778	0	798	37	0.788241307691771	0.0245557049471467	0.788241307691771	478.175861488858	0	14.896384207461						365	18	4	NaN	NaN	NaN	0.0073346	1	16070	34.193	29.042	1	108200			3279	2841	2794	2857	3279	3279		
DQVYPQYVIEYTEDK	15	Unmodified	_DQVYPQYVIEYTEDK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.443814	1888.87307	1.7957	0.0016977	0.11334	0.00010716	1.909	0.0018049	945.442840345351	13.753	0.15072	13.753	13.682	13.832	0	198	67	1.1918274123006	0.0438210304438855	1.1918274123006	480.847288580649	0	17.6797608901094						508	18	3	NaN	NaN	NaN	0.037258	1	29341	43.613	40.108	1	111410			3280	2129	2795	2858	3280	3280		
DQWYNVLEFSR	11	Unmodified	_DQWYNVLEFSR_			0	0	0	Q9BTE7	Q9BTE7	Q9BTE7	DCUN1D5	DCN1-like protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.846416	1455.67828	0.38998	0.00028423	-0.31604	-0.00023034	0.073941	5.3892E-05	728.846126958745	16.581	0.079799	16.581	16.546	16.626	0	477	40	1.0055473068722	0.0262082910405103	1.0055473068722	406.570951426009	0	10.596746419355						227	10	3	NaN	NaN	NaN	0.001244	1	17114	74.849	67.291	1	50850			3281	2736	2796	2859	3281	3281		
DQYISVLQTQVSLLK	15	Unmodified	_DQYISVLQTQVSLLK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.985452	1733.95635	0.87435	0.00075892	0.083672	7.2626E-05	0.95802	0.00083155	867.985579288959	17.326	0.07981	17.326	17.273	17.353	0	273	34	1.14198628764525	0.021963270168132	1.14198628764525	461.038719462945	0	8.86693479867768						154	10	3	NaN	NaN	NaN	0.00010597	1	25448	57.042	54.906	1	27415			3282	1668	2797	2860	3282	3282		
DQYSVIFESGDR	12	Unmodified	_DQYSVIFESGDR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.325513	1414.63647	1.7886	0.0012669	-1.4531	-0.0010293	0.3355	0.00023765	708.324624354323	11.332	0.18627	11.332	11.287	11.474	0	525	52	0.973257487423603	0.0343340389599219	0.973257487423603	393.622742463668	0	13.8860052451636						625	22	4	NaN	NaN	NaN	2.8559E-05	1	15913	115.41	106.94	1	250390			3283	1280	2798	2861	3283	3283		
DRDNDSDDVESNLLLPAGIALR	22	Unmodified	_DRDNDSDDVESNLLLPAGIALR_			0	0	1	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.066342	2397.1772	-0.069707	-5.577E-05	-2.2742	-0.0018195	-2.3439	-0.0018753	800.398421628473	16.555	0.079813	16.555	16.51	16.59	0	591	40	0.928742107665821	0.0263391634913087	0.928742107665821	561.185558132407	0	15.9152449777041						225	10	4	NaN	NaN	NaN	4.64E-08	1	36328	91.457	78.842	1	35073			3284	3136	2799	2862	3284	3284		
DRDVTFSPATIENELIK	17	Unmodified	_DRDVTFSPATIENELIK_			0	0	1	P55145	P55145	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.005584	1946.99492	-0.19123	-0.0001243	-1.2192	-0.00079252	-1.4105	-0.00091682	650.339141767925	15.837	0.33693	15.837	15.633	15.97	0	687	67	0.863749705078866	0.0447442889096176	0.863749705078866	522.608936307963	0	27.0723857796006						1230	39	5	NaN	NaN	NaN	0.00017226	1	30664	77.696	76.327	1	393760			3285	1268	2800	2863	3285	3285		
DRLEFWCTDVK	11	Unmodified	_DRLEFWCTDVK_			0	0	1	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.234493	1467.68165	-1.9094	-0.00093605	-0.20457	-0.00010029	-2.114	-0.0010363	490.234446470564	11.598	0.088727	11.598	11.545	11.633	0	810	25	0.78005493425781	0.0163773081327158	0.78005493425781	473.057640969292	0	9.93187839784775						137	11	3	NaN	NaN	NaN	0.033298	1	17505	27.589	26.439	1	25603			3286	3300	2801	2864	3286	3286		
DRPENVHGGILADDMGLGK	19	Unmodified	_DRPENVHGGILADDMGLGK_			0	0	1	Q14527	Q14527	Q14527	HLTF	Helicase-like transcription factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.330184	1992.96872	-0.088556	-5.8919E-05	0.48153	0.00032038	0.39297	0.00026146	665.664989732995	9.2568	0.11531	9.2568	9.2125	9.3278	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	536.058603600477	0	13.5255294230097						299	14	4	NaN	NaN	NaN	4.2687E-05	1	31505	54.813	51.372	1	68215			3287	1754	2802	2865	3287	3287		
DRPMEESLLLFEAMR	15	Unmodified	_DRPMEESLLLFEAMR_			0	0	1	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.97094	1835.89099	-0.042907	-2.6301E-05	0.55856	0.00034238	0.51565	0.00031608	613.305735842499	17.45	0.15076	17.45	17.388	17.539	0	588	22	0.93076847747433	0.0141845894763903	0.93076847747433	563.39930283679	0	8.58601039402402						316	18	5	NaN	NaN	NaN	0.0039491	1	28129	68.108	67.301	1	81329			3288	1101	2803	2866	3288	3288		
DRPQEADGIDSVIVVDNVPQVGPDR	25	Unmodified	_DRPQEADGIDSVIVVDNVPQVGPDR_			0	0	1	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	897.450855	2689.33074	1.4541	0.001305	0.41769	0.00037485	1.8718	0.0016799	897.786004950208	13.815	0.097525	13.815	13.77	13.868	0	498	52	0.991429299781895	0.0343150509571248	0.991429299781895	598.688730068186	0	20.7216331858114						465	12	4	NaN	NaN	NaN	1.4775E-09	1	37574	82.185	80.237	1	123650			3289	1280	2804	2867	3289	3289		
DRPSAAHIVEALETDV	16	Unmodified	_DRPSAAHIVEALETDV_			0	0	1	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.960086	1721.85843	-1.339	-0.00076989	-0.66397	-0.00038176	-2.003	-0.0011516	574.959653273008	15.163	0.19507	15.163	15.047	15.242	0	756	43	0.816857749704129	0.0285925652531284	0.816857749704129	494.693698480893	0	17.3158201158643						617	23	4	NaN	NaN	NaN	0.00012484	1	25105	37.146	35.436	1	213830			3290	2574	2805	2868	3290	3290		
DRPSAAHIVEALETDV	16	Unmodified	_DRPSAAHIVEALETDV_			0	0	1	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.93649	1721.85843	2.441	0.002104	-0.09222	-7.9487E-05	2.3488	0.0020245	861.935531454538	15.163	0.19507	15.163	15.047	15.242	0	333	61	1.10198982404297	0.0400350261714058	1.10198982404297	444.916278048373	0	16.1637017394605						695	23	4	NaN	NaN	NaN	0.029252	1	25107	69.327	60.952	1	200510			3291	2574	2805	2868	3291	3291		
DRTAPSAGMQPQPSLCSSAMR	21	Unmodified	_DRTAPSAGMQPQPSLCSSAMR_			0	0	1	Q13555	Q13555	Q13555	CAMK2G	Calcium/calmodulin-dependent protein kinase type II subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.013761	2247.01945	0.16192	0.00012145	-1.7238	-0.0012929	-1.5619	-0.0011714	750.347157202698	13.363	0.11532	13.363	13.318	13.434	0	624	58	0.906433495720521	0.0385544403778527	0.906433495720521	547.916542535437	0	23.305201949129						717	14	5	NaN	NaN	NaN	0.063747	1	35157	14.004	12.38	1	254610			3292	1683	2806	2869	3292	3292		
DRTDIQCLIPCAIDQDPYFR	20	Unmodified	_DRTDIQCLIPCAIDQDPYFR_			0	0	1	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.726386	2495.15733	0.11888	9.8998E-05	-1.5503	-0.001291	-1.4314	-0.001192	833.059229189189	16.998	0.097526	16.998	16.936	17.034	0	570	52	0.942920803299286	0.0344149140577592	0.942920803299286	569.624013891668	0	20.7902523888799						443	12	4	NaN	NaN	NaN	0.039238	1	36804	24.832	23.208	1	84539			3293	818	2807	2870	3293	3293		
DRTQQYDDLIDEFMK	15	Unmodified	_DRTQQYDDLIDEFMK_			0	0	1	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.628007	1915.86219	-1.5706	-0.0010046	-0.72115	-0.00046127	-2.2918	-0.0014659	639.627993678228	16.519	0.070923	16.519	16.475	16.546	0	726	31	0.837263974740672	0.0203948812138425	0.837263974740672	506.642026596815	0	12.3412737943047						127	9	3	NaN	NaN	NaN	0.072163	1	29964	29.131	28.25	1	20936			3294	817	2808	2871	3294	3294		
DSAIPVESDTDDEGAPR	17	Unmodified	_DSAIPVESDTDDEGAPR_			0	0	0	Q96D46	Q96D46	Q96D46	NMD3	60S ribosomal export protein NMD3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.39231	1772.77007	2.5565	0.0022686	-2.055	-0.0018236	0.50144	0.00044498	887.390311956705	7.1102	0.11528	7.1102	7.0747	7.19	-8.8818E-16	381	82	1.06991323971056	0.05411807910635	1.06991323971056	431.86663301261	0	21.844568083943						375	14	2	NaN	NaN	NaN	0.0011986	1	26476	56.938	50.191	1	103370			3295	2501	2809	2872	3295	3295		
DSALEFLTQLSR	12	Unmodified	_DSALEFLTQLSR_			0	0	0	Q6PJG6	Q6PJG6	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.361899	1378.70924	0.051905	3.5833E-05	-1.1016	-0.0007605	-1.0497	-0.00072466	690.361382297144	18.515	0.11527	18.515	18.488	18.603	0	519	25	0.97729762293174	0.0161560731115115	0.97729762293174	395.356430803561	0	6.53578526263817						103	14	3	NaN	NaN	NaN	0.00038241	1	14777	72.922	43.82	1	24089			3296	2077	2810	2873	3296	3296		
DSALETLQGQLEEK	14	Unmodified	_DSALETLQGQLEEK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.891217	1559.76788	1.4574	0.0011381	-0.69036	-0.0005391	0.76706	0.00059899	780.890800857741	13.221	0.15961	13.221	13.167	13.327	0	429	40	1.03776581230406	0.0261468289709272	1.03776581230406	419.334067310096	0	10.565250858763						316	19	2	NaN	NaN	NaN	0.0050371	1	20339	73.655	64.393	1	149370			3297	1782	2811	2874	3297	3297		
DSAQNSVIIVDK	12	Unmodified	_DSAQNSVIIVDK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.840799	1287.66705	2.0006	0.0012901	-1.3803	-0.00089008	0.62027	0.00039998	644.840729962062	7.3408	0.23939	7.3408	7.2964	7.5358	0	561	55	0.948993180460448	0.0364166254573408	0.948993180460448	384.175503566695	0	14.7423350465864						597	28	3	NaN	NaN	NaN	6.2828E-17	1	12000	208.03	170.44	1	356720			3298	495	2812	2875	3298	3298		
DSDPVMAGIGEEIAHFQK	18	Unmodified	_DSDPVMAGIGEEIAHFQK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.643769	1942.90948	0.69302	0.00044952	0.20142	0.00013065	0.89444	0.00058017	648.642795353493	16.094	0.16851	16.094	16.005	16.174	0	513	25	0.981336640919867	0.0161560731115115	0.981336640919867	593.763348694531	0	9.77532446302291						276	20	4	NaN	NaN	NaN	0.044039	1	30576	10.758	10.139	1	63598			3299	978	2813	2876	3299	3299		
DSDVEVYNIIK	11	Unmodified	_DSDVEVYNIIK_			0	0	0	P34896	P34896	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.8299	1293.64525	0.78502	0.00050856	1.4266	0.00092419	2.2116	0.0014328	647.831418025968	12.6	0.17735	12.6	12.493	12.671	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.343031292354	0	8.1807194141511						197	21	2	NaN	NaN	NaN	0.0053874	1	12183	46.447	27.191	1	46550			3300	953	2814	2877	3300	3300		
DSEDIYNLK	9	Unmodified	_DSEDIYNLK_			0	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.761486	1095.50842	0.89954	0.00049363	0.40989	0.00022493	1.3094	0.00071856	548.762029552961	7.7842	0.28382	7.7842	7.7221	8.0059	0	660	40	0.882057989648486	0.0264269571469923	0.882057989648486	357.742442195214	0	10.7181662662801						499	33	4	NaN	NaN	NaN	0.0082029	1	6588	72.492	60.425	1	181190			3301	2504	2815	2878	3301	3301		
DSEDNPQTLLFSATCPHWVFNVAK	24	Unmodified	_DSEDNPQTLLFSATCPHWVFNVAK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	926.106031	2775.29626	1.6181	0.0014985	-1.6269	-0.0015067	-0.0088526	-8.1985E-06	926.439140596883	18.683	0.12415	18.683	18.621	18.745	0	273	154	1.14198628764525	0.102138803904326	1.14198628764525	689.494851013426	0	61.6681479826836						1684	15	5	NaN	NaN	NaN	1.7902E-09	1	37832	102.1	99.198	1	385580			3302	3011	2816	2879	3302	3302		
DSEEFGENEEENVHSK	16	Unmodified	_DSEEFGENEEENVHSK_			0	0	0	Q9NWH9	Q9NWH9	Q9NWH9	SLTM	SAFB-like transcription modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.884849	1877.75514	3.1332	0.0029449	-0.72883	-0.00068501	2.4044	0.0022599	940.386266686963	4.4765	0.044337	4.4765	4.4588	4.5031	0	366	25	1.07994477139643	0.0160449211219345	1.07994477139643	435.726625559486	0	6.47366376781338						86	6	3	NaN	NaN	NaN	0.0041953	1	29087	46.358	44.648	1	13295			3303	3080	2817	2880	3303	3303		
DSEEPFSSVEIQAALSK	17	Unmodified	_DSEEPFSSVEIQAALSK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.946721	1835.87889	1.9941	0.0018324	0.30451	0.00027983	2.2986	0.0021123	919.948150719632	15.171	0.25713	15.171	15.101	15.358	1.7764E-15	252	76	1.15595906938629	0.049916552848811	1.15595906938629	466.474217007168	0	20.1432607109593						593	30	3	NaN	NaN	NaN	0.063183	1	28128	32.61	24.645	1	213130			3304	835	2818	2881	3304	3304		
DSETGENIR	9	Unmodified	_DSETGENIR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.73326	1019.45197	0.36085	0.0001843	1.0643	0.00054355	1.4251	0.00072785	510.733736052898	2.4104	0.28377	2.4104	2.3749	2.6587	0	765	52	0.810730346695089	0.034746123152013	0.810730346695089	329.118121819734	0	14.1052803054978						501	33	2	NaN	NaN	NaN	0.00036794	1	4721	102.46	87.929	1	120190			3305	1007	2819	2882	3305	3305		
DSETVDEDEEVDPALTVGTIK	21	Unmodified	_DSETVDEDEEVDPALTVGTIK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1131.529	2261.04345	1.0144	0.0011478	-0.26354	-0.0002982	0.75086	0.00084962	1132.03020622523	13.043	0.070925	13.043	13.008	13.079	0	120	46	1.2434810169581	0.0297531834770868	1.2434810169581	501.084540647164	0	11.9896163046204						205	9	3	NaN	NaN	NaN	2.9607E-11	1	35285	103.23	102.21	1	39299			3306	1766	2820	2883	3306	3306		
DSFDDRGPSLNPVLDYDHGSR	21	Unmodified	_DSFDDRGPSLNPVLDYDHGSR_			0	0	1	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	591.272818	2361.06217	1.0028	0.00059293	0.22745	0.00013449	1.2303	0.00072742	591.523756297202	10.986	0.20395	10.986	10.942	11.146	0	654	61	0.886123392477847	0.0406371291236521	0.886123392477847	713.972468640657	0	32.7423828838921						949	24	6	NaN	NaN	NaN	0.0012609	1	36135	94.119	93.024	1	453860			3307	1062	2821	2884	3307	3307		
DSFGSSQASVASSQPVSSEMYR	22	Unmodified	_DSFGSSQASVASSQPVSSEMYR_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1154.01333	2306.0121	2.0109	0.0023206	-1.045	-0.0012059	0.9659	0.0011147	1154.51363606375	9.8066	0.079769	9.8066	9.78	9.8598	0	117	58	1.24546401832526	0.0376873717567214	1.24546401832526	501.82384603338	0	15.1850407266512						408	10	4	NaN	NaN	NaN	5.0898E-08	1	35677	85.742	83.64	1	76992			3308	1489	2822	2885	3308	3308		
DSFPWEVPK	9	Unmodified	_DSFPWEVPK_			0	0	0	P31153	P31153	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.771657	1103.52876	-0.32952	-0.00018215	-0.9743	-0.00053856	-1.3038	-0.00072072	552.770920563659	13.23	0.23946	13.23	13.123	13.363	0	723	91	0.839303037468863	0.0610827782326567	0.839303037468863	340.371289344477	0	24.7715343036196						1344	28	3	NaN	NaN	NaN	0.060378	1	6806	40.502	18.116	1	475910			3309	921	2823	2886	3309	3309		
DSFQHVELIR	10	Unmodified	_DSFQHVELIR_			0	0	0		REV__Q01082	REV__Q01082			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.325119	1242.63569	1.5527	0.00096625	0.0012851	7.9972E-07	1.5539	0.00096705	622.32508215736	10.924	0.23055	10.924	10.826	11.057	0	549	34	0.957085760909907	0.0222530586923161	0.957085760909907	387.600549281552	0	9.01204272868534						296	27	2	NaN	NaN	NaN	0.0060394	1	10703	43.272	24.016	1	119290	+		3310	3493	2824	2887	3310	3310		
DSFSDPYAHICFLHR	15	Unmodified	_DSFSDPYAHICFLHR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.286027	1863.83625	0.1099	6.8388E-05	0.080648	5.0186E-05	0.19055	0.00011857	622.620195761701	12.352	0.1064	12.352	12.307	12.414	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	536.315146190118	0	12.3009665736319						304	13	5	NaN	NaN	NaN	0.00010783	1	28775	85.821	82.927	1	103500			3311	3136	2825	2888	3311	3311		
DSGLVSQQLPWLFEK	15	Unmodified	_DSGLVSQQLPWLFEK_			0	0	0	Q14146	Q14146	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.956694	1745.89884	1.3198	0.0011534	-0.4454	-0.00038926	0.87437	0.00076416	873.95619107177	18.497	0.044409	18.497	18.47	18.515	0	318	22	1.11199926528787	0.0140093594981896	1.11199926528787	448.908109148344	0	5.655502911761						90	6	3	NaN	NaN	NaN	0.069471	1	25775	38.14	31.393	1	15950			3312	1726	2826	2889	3312	3312		
DSGPLFNTDYDILK	14	Unmodified	_DSGPLFNTDYDILK_			0	0	0	Q15054	Q15054	Q15054	POLD3	DNA polymerase delta subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.390853	1596.76715	1.7393	0.0013904	2.3415	0.0018718	4.0808	0.0032622	799.393206174635	16.165	0.14189	16.165	16.094	16.236	0	348	31	1.09197348738011	0.020036815138085	1.09197348738011	441.147988084707	0	8.09470265344868						345	17	4	NaN	NaN	NaN	1.1979E-05	1	21472	101.45	90.09	1	97661			3313	1803	2827	2890	3313	3313		
DSGPLSDPITGK	12	Unmodified	_DSGPLSDPITGK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.801143	1185.58773	0.68324	0.00040571	0.94952	0.00056382	1.6328	0.00096953	593.800900563696	8.5736	0.21293	8.5736	8.4938	8.7068	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.570031534333	0	8.21926825540567						159	25	2	NaN	NaN	NaN	0.00057979	1	9019	74.849	61.201	1	40735			3314	2114	2828	2891	3314	3314		
DSGPPPSTVSEAEFEDIMK	19	Unmodified	_DSGPPPSTVSEAEFEDIMK_			0	0	0	Q8N684	Q8N684	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.46188	2034.9092	0.80273	0.00081755	2.1213	0.0021604	2.924	0.002978	1018.96543236049	14.79	0.1951	14.79	14.737	14.932	0	165	58	1.21370334790578	0.0377649812720997	1.21370334790578	489.416887377404	0	15.228449042304						526	23	2	NaN	NaN	NaN	0.0039207	1	32237	56.08	52.996	1	214220			3315	2262	2829	2892	3315	3315		
DSGSFVAFQNIPGSELMSSFAK	22	Unmodified	_DSGSFVAFQNIPGSELMSSFAK_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1160.05173	2318.0889	0.23456	0.0002721	0.14894	0.00017278	0.3835	0.00044488	1160.55341196637	19.8	0.026605	19.8	19.782	19.809	0	69	34	1.27715511956461	0.0217682430825723	1.27715511956461	514.57679769987	0	8.77061262597522						121	4	4	NaN	NaN	NaN	0.0011167	1	35793	59.997	56.423	1	16979			3316	1042	2830	2893	3316	3316		
DSGTDDQEEEPLER	14	Unmodified	_DSGTDDQEEEPLER_			0	0	0	Q8TDP1	Q8TDP1	Q8TDP1	RNASEH2C	Ribonuclease H2 subunit C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.337003	1618.65945	2.6974	0.0021858	-1.1782	-0.00095478	1.5192	0.001231	810.336362607487	4.9997	0.053206	4.9997	4.9819	5.0351	0	459	16	1.01763759082241	0.0100703663135553	1.01763759082241	411.069113660772	0	4.0678691432841						49	7	2	NaN	NaN	NaN	0.00034529	1	22139	74.524	73.472	1	7644.7			3317	2349	2831	2894	3317	3317		
DSGYPETLVNLIVLSQHLGKPPEVTNR	27	Unmodified	_DSGYPETLVNLIVLSQHLGKPPEVTNR_			0	0	1	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	992.864488	2975.57164	0.7733	0.00076778	-1.2764	-0.0012672	-0.50305	-0.00049946	993.528870482376	19.304	0.16848	19.304	19.162	19.33	0	216	64	1.17988115188462	0.0418205460286183	1.17988115188462	712.135450121131	0	25.2414349723538						473	20	5	NaN	NaN	NaN	0.018538	1	38181	22.796	22.646	1	83061			3318	106	2832	2895	3318	3318		
DSGYPETLVNLIVLSQHLGKPPEVTNR	27	Unmodified	_DSGYPETLVNLIVLSQHLGKPPEVTNR_			0	0	1	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	744.900185	2975.57164	-0.48145	-0.00035863	1.2301	0.0009163	0.74865	0.00055767	745.151976131217	19.295	0.14189	19.295	19.188	19.33	0	573	43	0.940896116921038	0.0283515051757137	0.940896116921038	757.188598303853	0	22.8159475607705						438	17	5	NaN	NaN	NaN	0.001275	1	38182	27.344	26.902	1	91942			3319	106	2832	2895	3319	3319		
DSIFSNLTGQLDYQGFEK	18	Unmodified	_DSIFSNLTGQLDYQGFEK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.49183	2060.9691	1.1895	0.001227	0.72738	0.00075028	1.9169	0.0019772	1031.9940433172	18.213	0.16848	18.213	18.16	18.328	0	192	55	1.1958073123591	0.035814196716965	1.1958073123591	482.159128933338	0	14.4405722510864						634	20	5	NaN	NaN	NaN	2.0891E-19	1	32720	162.16	137.42	1	225510			3320	1026	2833	2896	3320	3320		
DSIQSHQESLSVLR	14	Unmodified	_DSIQSHQESLSVLR_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.609276	1597.806	-0.4698	-0.00025069	0.20212	0.00010785	-0.26768	-0.00014284	533.609433157959	7.8197	0.079813	7.8197	7.7931	7.8729	0	756	25	0.816857749704129	0.0163363337922245	0.816857749704129	494.999921575874	0	9.8995007991507						146	10	3	NaN	NaN	NaN	9.8484E-06	1	21509	69.641	62.501	1	36250			3321	3067	2834	2897	3321	3321		
DSIQSHQESLSVLR	14	Unmodified	_DSIQSHQESLSVLR_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.910276	1597.806	2.3163	0.0018528	-0.17072	-0.00013656	2.1456	0.0017162	799.910628350012	7.8197	0.10642	7.8197	7.7842	7.8906	0	369	34	1.07793901817685	0.0220663300779218	1.07793901817685	435.475756757287	0	8.91455975477322						245	13	4	NaN	NaN	NaN	0.00011973	1	21511	75.5	67.499	1	54160			3322	3067	2834	2897	3322	3322		
DSIVHQAGMLK	11	Unmodified	_DSIVHQAGMLK_			0	0	0	O15144	O15144	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.816073	1197.61759	1.1929	0.00071551	1.513	0.00090754	2.7059	0.0016231	599.817163486353	6.6047	0.2394	6.6047	6.5161	6.7555	0	561	43	0.948993180460448	0.028335804573887	0.948993180460448	384.481906570007	0	11.4801711867699						455	28	4	NaN	NaN	NaN	4.4738E-06	1	9391	106.35	90.771	1	191120			3323	148	2835	2898	3323	3323		
DSLAWLSLVK	10	Unmodified	_DSLAWLSLVK_			0	0	0	Q9Y315	Q9Y315	Q9Y315	DERA	Deoxyribose-phosphate aldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.324057	1130.63356	-0.15071	-8.5349E-05	-3.1593	-0.0017892	-3.3101	-0.0018746	566.32205618412	17.832	0.10638	17.832	17.796	17.903	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	368.309484934419	0	6.58182636181448						138	13	3	NaN	NaN	NaN	0.017019	1	7556	41.796	32.403	1	37487			3324	3364	2836	2899	3324	3324		
DSLDPSFTHAMQLLTAEIEK	20	Unmodified	_DSLDPSFTHAMQLLTAEIEK_			0	0	0	Q07666	Q07666	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	749.371826	2245.09365	-0.1907	-0.00014291	-0.59339	-0.00044467	-0.78409	-0.00058758	749.705770284473	19.942	0.053204	19.942	19.933	19.986	0	588	37	0.93076847747433	0.0243181264417436	0.93076847747433	562.629394250348	0	14.6997809663131						210	7	6	NaN	NaN	NaN	3.8602E-08	1	35146	98.328	92.124	1	82783			3325	1569	2837	2900	3325	3325		
DSLDPSFTHAMQLLTAEIEK	20	Unmodified	_DSLDPSFTHAMQLLTAEIEK_			0	0	0	Q07666	Q07666	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	749.371826	2245.09365	0.25096	0.00018806	-0.47143	-0.00035328	-0.22047	-0.00016521	749.706830241709	19.942	0.026601	19.942	19.933	19.96	0	477	40	1.0055473068722	0.0262119132032216	1.0055473068722	607.831577264138	0	15.844534052787						162	4	5	NaN	NaN	NaN	0.0012729	1	35147	48.892	44.82	1	69448			3326	1569	2837	2900	3326	3326		
DSLGAYASQDANEQGQDLGK	20	Unmodified	_DSLGAYASQDANEQGQDLGK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.9667	2065.91886	2.2999	0.002378	-0.85181	-0.00088075	1.4481	0.0014973	1034.46731543716	8.0502	0.053353	8.0502	8.0237	8.077	0	213	40	1.18187287897418	0.025885345726578	1.18187287897418	476.533017622913	0	10.4370124154174						144	7	3	NaN	NaN	NaN	1.0286E-10	1	32800	91.1	88.71	1	21228			3327	2819	2838	2901	3327	3327		
DSLIFLVDASK	11	Unmodified	_DSLIFLVDASK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.332079	1206.6496	0.083261	5.0317E-05	-0.36069	-0.00021798	-0.27743	-0.00016766	604.331778961965	15.89	0.31922	15.89	15.766	16.085	0	585	76	0.932794566565362	0.0506592831368379	0.932794566565362	377.88686948749	0	20.5227159347081						1297	37	4	NaN	NaN	NaN	0.0032303	1	9648	41.796	32.403	1	560590			3328	673	2839	2902	3328	3328		
DSLIIIDELGR	11	Unmodified	_DSLIIIDELGR_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.34826	1242.68197	0.21211	0.00013201	-0.89653	-0.00055795	-0.68441	-0.00042594	622.347443201025	16.413	0.20393	16.413	16.315	16.519	0	564	40	0.946969335010767	0.0263099961420051	0.946969335010767	383.503446415289	0	10.6550168232398						513	24	4	NaN	NaN	NaN	0.0070814	1	10713	33.723	16.253	1	173350			3329	1063	2840	2903	3329	3329		
DSLLQDGEFSMDLR	14	Unmodified	_DSLLQDGEFSMDLR_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.587372	1624.74029	-1.6294	-0.00088407	-0.2911	-0.00015795	-1.9204	-0.001042	542.586915912275	15.943	0.088674	15.943	15.916	16.005	0	726	19	0.837263974740672	0.0122352270963073	0.837263974740672	507.293501759535	0	7.41325482256821						126	11	3	NaN	NaN	NaN	0.072356	1	22319	16.759	14.776	1	23939			3330	563	2841	2904	3330	3330		
DSLLQDGEFSMDLR	14	Unmodified	_DSLLQDGEFSMDLR_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.37742	1624.74029	1.0925	0.00088864	0.80223	0.00065252	1.8948	0.0015412	813.878897612283	16.377	0.38129	16.377	16.182	16.564	0	396	52	1.05987478976334	0.0341260341638749	1.05987478976334	428.116994590003	0	13.7845859950835						668	44	3	NaN	NaN	NaN	0.003448	1	22320	66.953	53.779	1	149850			3331	563	2841	2904	3331	3331		
DSLLQDGEFSMDLR	14	Unmodified	_DSLLQDGEFSMDLR_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.37742	1624.74029	1.7891	0.0014552	0.79868	0.00064963	2.5878	0.0021048	813.378047920182	15.952	0.37246	15.952	15.881	16.253	-1.7764E-15	396	76	1.05987478976334	0.0501992080975948	1.05987478976334	428.116994602878	0	20.2770499966184						2409	43	7	NaN	NaN	NaN	1.6279E-24	1	22321	248.59	230.08	1	2186400			3332	563	2841	2904	3332	3332		
DSLLTHIQNLK	11	Unmodified	_DSLLTHIQNLK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.361702	1280.70885	0.79755	0.00051152	2.4692	0.0015836	3.2667	0.0020952	641.362802233222	11.802	0.11525	11.802	11.758	11.873	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	401.377801514518	0	6.53532329418414						220	14	3	NaN	NaN	NaN	8.4572E-05	1	11795	101.82	73.721	1	104010			3333	3437	2842	2905	3333	3333		
DSLQELSTEQK	11	Unmodified	_DSLQELSTEQK_			0	0	0	Q99567	Q99567	Q99567	NUP88	Nuclear pore complex protein Nup88	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.314614	1276.61468	1.2525	0.00080073	1.2424	0.0007943	2.4949	0.001595	639.315233109261	6.321	0.10643	6.321	6.2589	6.3653	0	555	40	0.953040030838688	0.0263063536302146	0.953040030838688	385.849203969506	0	10.6504294458925						320	13	4	NaN	NaN	NaN	1.5967E-05	1	11670	116.13	96.808	1	78332			3334	2650	2843	2906	3334	3334		
DSLSVNEFK	9	Unmodified	_DSLSVNEFK_			0	0	0	Q99584	Q99584	Q99584	S100A13	Protein S100-A13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.758746	1037.50294	0.4671	0.00024278	-0.57758	-0.0003002	-0.11047	-5.7419E-05	519.75792984445	8.4229	0.26606	8.4229	8.3253	8.5914	0	690	34	0.86171403876517	0.0223923326891349	0.86171403876517	349.734012605526	0	9.08811973655588						419	31	4	NaN	NaN	NaN	0.022723	1	5178	37.722	25.656	1	93986			3335	2653	2844	2907	3335	3335		
DSLVDIIGICK	11	Unmodified	_DSLVDIIGICK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.831388	1231.64822	0.85171	0.00052536	4.9136	0.0030308	5.7653	0.0035562	616.830231800107	16.12	0.25716	16.12	16.014	16.271	0	555	70	0.953040030838688	0.0465549205796969	0.953040030838688	385.999919528835	0	18.8556566523446						877	30	5	NaN	NaN	NaN	0.00066522	1	10372	81.099	68.503	1	398220			3336	865	2845	2908	3336	3336		
DSLYAQGR	8	Unmodified	_DSLYAQGR_			0	0	0	Q969Q0	Q969Q0	Q969Q0	RPL36AL	60S ribosomal protein L36a-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.224874	908.435195	-0.29138	-0.00013264	0.96218	0.00043801	0.6708	0.00030537	455.22554647552	3.4213	0.20404	3.4213	3.3415	3.5455	0	765	28	0.810730346695089	0.0183898836962016	0.810730346695089	329.653293481962	0	7.47756112980812						171	24	2	NaN	NaN	NaN	0.032625	1	2474	58.687	43.188	1	54109			3337	2461	2846	2909	3337	3337		
DSNNLCLHFNPR	12	Unmodified	_DSNNLCLHFNPR_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.233375	1485.6783	-0.68901	-0.00034191	-0.36552	-0.00018138	-1.0545	-0.00052329	496.233476359454	8.5825	0.26633	8.5825	8.5027	8.769	0	756	43	0.816857749704129	0.0285885886986983	0.816857749704129	495.320423589213	0	17.3353461715777						579	31	4	NaN	NaN	NaN	0.00035336	1	18080	67.507	60.367	1	219770			3338	600	2847	2910	3338	3338		
DSNNLCLHFNPR	12	Unmodified	_DSNNLCLHFNPR_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.846424	1485.6783	1.4924	0.0011101	3.5296	0.0026255	5.0221	0.0037356	744.350721401896	8.5914	0.079839	8.5914	8.5382	8.618	0	426	43	1.03977710643793	0.0281639553291928	1.03977710643793	420.331070472891	0	11.3853107737922						177	10	3	NaN	NaN	NaN	0.0062629	1	18081	43.168	40.497	1	42978			3339	600	2847	2910	3339	3339		
DSPDLLLLLR	10	Unmodified	_DSPDLLLLLR_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.842613	1153.67067	-0.1951	-0.00011274	-0.23827	-0.00013768	-0.43337	-0.00025042	577.842489195245	18.727	0.097524	18.727	18.683	18.781	0	579	64	0.936845902828289	0.0425655822640078	0.936845902828289	379.72512016438	0	17.2528062419564						302	12	3	NaN	NaN	NaN	3.5871E-07	1	8174	133.68	72.972	1	93867			3340	2394	2848	2911	3340	3340		
DSPSVWAAVPGK	12	Unmodified	_DSPSVWAAVPGK_			0	0	0	P07737;CON__P02584	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.31422	1212.61389	1.4315	0.00086935	0.87416	0.00053089	2.3056	0.0014002	607.314720865334	10.48	0.2483	10.48	10.374	10.622	0	606	115	0.918606045818476	0.0769861859063165	0.918606045818476	372.118218015301	0	31.1863420033643						1300	29	5	NaN	NaN	NaN	3.1908E-07	1	9802	143.39	125.92	1	1179700			3341	563	2849	2912	3341	3341		
DSPTQEREELFIQK	14	Unmodified	_DSPTQEREELFIQK_			0	0	1	Q14738	Q14738	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.956453	1718.84753	-0.0511	-2.9329E-05	0.004466	2.5633E-06	-0.046634	-2.6766E-05	573.956365270159	7.9438	0.088644	7.9438	7.8995	7.9881	0	705	31	0.851531465363931	0.0203693921717962	0.851531465363931	515.699500606176	0	12.3359920307316						164	11	3	NaN	NaN	NaN	0.021186	1	25025	51.531	43.157	1	34701			3342	1772	2850	2913	3342	3342		
DSPYMAFIHPATGGYNPDLVR	21	Unmodified	_DSPYMAFIHPATGGYNPDLVR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.37216	2320.09465	0.8909	0.00068989	-0.20471	-0.00015852	0.68619	0.00053137	774.706463910354	14.985	0.13304	14.985	14.914	15.047	-1.7764E-15	546	112	0.959108205975751	0.0748098793176547	0.959108205975751	579.644952060219	0	45.2119673677456						1097	16	4	NaN	NaN	NaN	0.00024065	1	35816	87.251	85.981	1	228960			3343	326	2851	2914	3343	3343		
DSPYMAFIHPATGGYNPDLVR	21	Unmodified	_DSPYMAFIHPATGGYNPDLVR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.0546	2320.09465	0.47178	0.00054776	3.8035	0.0044161	4.2753	0.0049638	1161.5631790261	14.976	0.09757	14.976	14.95	15.047	0	90	55	1.26329880838669	0.0356329655820204	1.26329880838669	508.991336940217	0	14.3567544513868						288	12	3	NaN	NaN	NaN	0.051809	1	35817	4.5975	4.1626	1	56581			3344	326	2851	2914	3344	3344		
DSQDAGGFGPEDR	13	Unmodified	_DSQDAGGFGPEDR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.78147	1349.54839	2.3427	0.0015831	-0.60143	-0.00040643	1.7413	0.0011767	675.781108866837	4.9997	0.26598	4.9997	4.911	5.177	0	552	43	0.955063035883597	0.0283161971552985	0.955063035883597	386.444512645771	0	11.4575044772172						377	31	2	NaN	NaN	NaN	0.0047443	1	13870	62.454	53.98	1	128690			3345	1816	2852	2915	3345	3345		
DSQSWIGGNNEPLTGFTWR	19	Unmodified	_DSQSWIGGNNEPLTGFTWR_			0	0	0	Q8NHH9	Q8NHH9	Q8NHH9	ATL2	Atlastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1083.00597	2163.99738	0.27638	0.00029933	0.67703	0.00073323	0.95342	0.0010326	1083.50825552128	17.273	0.088672	17.273	17.229	17.317	0	171	37	1.20972836110953	0.023853197519079	1.20972836110953	487.61676752623	0	9.61473620305145						196	11	3	NaN	NaN	NaN	6.3572E-07	1	34232	78.71	71.063	1	33614			3346	2323	2853	2916	3346	3346		
DSQTQAILTK	10	Unmodified	_DSQTQAILTK_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.798403	1103.58225	1.1051	0.00061089	-0.37999	-0.00021006	0.72509	0.00040083	552.798167943553	5.1859	0.15963	5.1859	5.1504	5.31	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	369.241121959203	0	7.40622715676159						247	19	3	NaN	NaN	NaN	0.0020423	1	6818	65.933	51.17	1	67305			3347	1626	2854	2917	3347	3347		
DSQVVQVVLDGLK	13	Unmodified	_DSQVVQVVLDGLK_			0	0	0	O00505	O00505	O00505	KPNA3	Importin subunit alpha-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.393199	1398.77184	0.19892	0.00013932	-0.12723	-8.9108E-05	0.071689	5.0211E-05	700.393309024902	16.91	0.12419	16.91	16.847	16.972	0	441	67	1.02971785871157	0.0443065760406083	1.02971785871157	416.503208849411	0	17.9212499209581						535	15	3	NaN	NaN	NaN	0.00043942	1	15423	65.879	46.555	1	155830			3348	87	2855	2918	3348	3348		
DSSDPNELYVNHK	13	Unmodified	_DSSDPNELYVNHK_			0	0	0	O15160	O15160	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.346977	1516.6794	2.2142	0.0016813	-0.36679	-0.00027852	1.8474	0.0014028	759.346417326493	4.6539	0.15074	4.6539	4.6273	4.778	0	456	28	1.01965166402748	0.0181266605748145	1.01965166402748	412.117589668854	0	7.32634087540384						170	18	2	NaN	NaN	NaN	1.6938E-05	1	19024	136.94	126.69	1	49880			3349	151	2856	2919	3349	3349		
DSSQVHPLAVLLLTDGDVHIR	21	Unmodified	_DSSQVHPLAVLLLTDGDVHIR_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.413125	2284.21754	0.88656	0.00067592	-0.13306	-0.00010145	0.7535	0.00057448	762.412555075193	16.519	0.1064	16.519	16.466	16.573	0	408	28	1.0518390438467	0.0180891625147663	1.0518390438467	635.746998498686	0	10.9333560504278						120	13	2	NaN	NaN	NaN	0.052588	1	35519	18.927	18.562	1	33276			3350	2114	2857	2920	3350	3350		
DSSTCPGDYVLSVSENSR	18	Unmodified	_DSSTCPGDYVLSVSENSR_			0	0	0	P46109	P46109	P46109	CRKL	Crk-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.931276	1971.848	1.6887	0.0016666	0.0069149	6.8246E-06	1.6956	0.0016735	987.432372913815	11.571	0.088739	11.571	11.536	11.624	0	276	37	1.13998907770044	0.0239648752236348	1.13998907770044	459.791768412107	0	9.66575257113652						233	11	4	NaN	NaN	NaN	0.0022381	1	31136	45.654	44.03	1	43575			3351	1079	2858	2921	3351	3351		
DSTFDLPADSIAPFHICYYGR	21	Unmodified	_DSTFDLPADSIAPFHICYYGR_			0	0	0	Q8N1G2	Q8N1G2	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	815.710842	2444.1107	0.16188	0.00013205	-0.65304	-0.0005327	-0.49116	-0.00040065	816.044482407172	17.53	0.062075	17.53	17.495	17.557	0	561	22	0.948993180460448	0.0141669189625594	0.948993180460448	573.358672429492	0	8.55930897717121						116	8	3	NaN	NaN	NaN	0.031928	1	36549	9.5132	8.7021	1	21395			3352	2240	2859	2922	3352	3352		
DSTFLSTLEHHLSR	14	Unmodified	_DSTFLSTLEHHLSR_			0	0	0	Q969V3	Q969V3	Q969V3	NCLN	Nicalin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.277638	1641.81108	-0.24375	-0.00013364	-1.4721	-0.00080714	-1.7159	-0.00094078	548.276877953182	13.939	0.19508	13.939	13.886	14.081	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	518.360923116255	0	12.3389019047279						400	23	5	NaN	NaN	NaN	0.00013948	1	22805	78.043	76.059	1	166980			3353	2463	2860	2923	3353	3353		
DSTFLSTLEHHLSR	14	Unmodified	_DSTFLSTLEHHLSR_			0	0	0	Q969V3	Q969V3	Q969V3	NCLN	Nicalin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.912818	1641.81108	1.7579	0.0014448	0.70556	0.00057991	2.4634	0.0020247	821.91279079242	13.939	0.097516	13.939	13.903	14.001	0	312	31	1.11600111266355	0.020009239153943	1.11600111266355	450.748567628945	0	8.08165492457169						202	12	3	NaN	NaN	NaN	6.2994E-05	1	22807	72.846	68.017	1	47801			3354	2463	2860	2923	3354	3354		
DSTLIMQLLR	10	Unmodified	_DSTLIMQLLR_			0	0	0	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P62258	YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAZ;YWHAH	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.334098	1188.65364	-0.86074	-0.00051243	0.13608	8.1013E-05	-0.72466	-0.00043141	595.334144233919	19.339	0.070941	19.339	19.312	19.383	0	636	28	0.898312834727904	0.0182778248645526	0.898312834727904	363.980173666111	0	7.40584528156461						137	9	3	NaN	NaN	NaN	0.00087177	1	9125	88.921	74.926	1	30544			3355	1375;1427;863;1361;933;932;1547	2861	2924	3355	3355		
DSTLIMQLLR	10	Unmodified	_DSTLIMQLLR_			0	0	0	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P62258	YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAZ;YWHAH	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.334098	1188.65364	0.18031	0.00010735	-0.47984	-0.00028567	-0.29953	-0.00017832	595.333515250025	18.266	0.51432	18.266	18.151	18.665	0	645	133	0.892219381832517	0.0892655710990496	0.892219381832517	361.511218911779	0	36.1688011625498						2956	59	6	NaN	NaN	NaN	3.0146E-14	1	9126	163.2	123.88	1	6915200			3356	1375;1427;863;1361;933;932;1547	2861	2924	3356	3356		
DSTLIMQLLR	10	Oxidation (M)	_DSTLIM(Oxidation (M))QLLR_	DSTLIM(1)QLLR	DSTLIM(130)QLLR	0	1	0	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P62258	YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAZ;YWHAH	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.331556	1204.64856	-0.6205	-0.00037437	-1.5742	-0.00094975	-2.1947	-0.0013241	603.330999634922	16.874	0.43451	16.874	16.759	17.193	0	627	79	0.90440375274676	0.0527697014855355	0.90440375274676	366.392278515246	0	21.3780748975602						1414	50	5	NaN	NaN	NaN	4.9732E-07	1	9602	133.98	118.4	1	1412700			3357	1375;1427;863;1361;933;932;1547	2861	2925	3357	3357	292	
DSTLIMQLLR	10	Oxidation (M)	_DSTLIM(Oxidation (M))QLLR_	DSTLIM(1)QLLR	DSTLIM(160)QLLR	0	1	0	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P62258	YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAZ;YWHAH	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.331556	1204.64856	-0.30401	-0.00018342	-1.6877	-0.0010182	-1.9917	-0.0012017	603.330928274068	16.67	0.19507	16.67	16.599	16.794	0	633	70	0.900343422309015	0.0466776453794098	0.900343422309015	364.747356884522	0	18.9100596015564						1227	23	5	NaN	NaN	NaN	1.4E-07	1	9603	162.59	151.88	1	1438300			3358	1375;1427;863;1361;933;932;1547	2861	2925	3358	3358	292	
DSVINLSESVEDGPK	15	Unmodified	_DSVINLSESVEDGPK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.888674	1587.7628	1.7357	0.0013797	0.54316	0.00043175	2.2788	0.0018114	795.390401891184	11.509	0.22175	11.509	11.429	11.651	0	375	64	1.07392668217569	0.0421440729846028	1.07392668217569	433.878396276576	0	17.0266770559027						616	26	4	NaN	NaN	NaN	2.4273E-06	1	21197	89.382	81.008	1	183440			3359	1901	2862	2926	3359	3359		
DSVVAGFQWATK	12	Unmodified	_DSVVAGFQWATK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.832777	1307.651	1.1707	0.00076662	-0.47918	-0.00031379	0.69152	0.00045283	654.832528438002	13.3	0.29265	13.3	13.176	13.469	0	549	79	0.957085760909907	0.0525508774778848	0.957085760909907	387.388724611821	0	21.2704213507844						1586	34	5	NaN	NaN	NaN	3.3325E-05	1	12588	127.03	92.247	1	1092200			3360	679	2863	2927	3360	3360		
DSVVAGFQWATK	12	Unmodified	_DSVVAGFQWATK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.832777	1307.651	1.0835	0.00070948	0.6695	0.00043841	1.753	0.0011479	654.833177307085	13.513	0.31033	13.513	13.398	13.708	0	552	46	0.955063035883597	0.0303324855868733	0.955063035883597	386.570004544896	0	12.2773352654439						436	36	3	NaN	NaN	NaN	0.067578	1	12589	27.589	21.723	1	145760			3361	679	2863	2927	3361	3361		
DSVWGSGGGQQSVNHLVK	18	Unmodified	_DSVWGSGGGQQSVNHLVK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.974618	1853.90202	0.28441	0.00017604	-0.069728	-4.316E-05	0.21468	0.00013288	619.30900566103	8.3608	0.10646	8.3608	8.3253	8.4318	0	711	49	0.847456455381371	0.0325955612165331	0.847456455381371	512.932747634458	0	19.7288375931474						440	13	4	NaN	NaN	NaN	6.163E-07	1	28572	85.081	78.704	1	148750			3362	1946	2864	2928	3362	3362		
DSVWGSGGGQQSVNHLVK	18	Unmodified	_DSVWGSGGGQQSVNHLVK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.958288	1853.90202	2.5279	0.0023458	-1.3497	-0.0012525	1.1782	0.0010933	928.458599197825	8.352	0.088708	8.352	8.3164	8.4051	0	273	61	1.14198628764525	0.0399524602797869	1.14198628764525	460.80206915408	0	16.1211886376355						425	11	4	NaN	NaN	NaN	0.0036571	1	28573	58.338	56.628	1	142930			3363	1946	2864	2928	3363	3363		
DSWLDNIDWVK	11	Unmodified	_DSWLDNIDWVK_			0	0	0	O95400	O95400	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.835517	1389.65648	-0.053515	-3.7238E-05	2.947	0.0020506	2.8935	0.0020134	695.836952183669	18.16	0.17734	18.16	18.115	18.293	0	513	34	0.981336640919867	0.0222099939443385	0.981336640919867	396.959310461564	0	8.9841380764463						309	21	4	NaN	NaN	NaN	0.0016517	1	15129	43.168	31.808	1	93239			3364	433	2865	2929	3364	3364		
DSWVDIFR	8	Unmodified	_DSWVDIFR_			0	0	0	CON__Q3ZBS7	CON__Q3ZBS7	CON__Q3ZBS7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.256174	1036.49779	-0.98029	-0.00050902	-1.0467	-0.00054352	-2.027	-0.0010525	519.255640269091	16.918	0.15079	16.918	16.865	17.016	0	681	43	0.867820189810857	0.0284973564255872	0.867820189810857	352.21672114871	0	11.5660427810674						446	18	3	NaN	NaN	NaN	0.00017954	1	5143	108.92	79.614	1	166710		+	3365	43	2866	2930	3365	3365		
DSYDSYATHNE	11	Unmodified	_DSYDSYATHNE_			0	0	0	Q14011	Q14011	Q14011	CIRBP	Cold-inducible RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.249471	1300.48439	1.7803	0.0011594	0.25201	0.00016412	2.0323	0.0013236	651.249578897185	4.5741	0.097516	4.5741	4.5386	4.6361	0	603	25	0.920633820089869	0.0162210713020401	0.920633820089869	372.655951972613	0	6.56599685582631						139	12	3	NaN	NaN	NaN	4.6417E-05	1	12355	87.895	87.445	1	30592			3366	1714	2867	2931	3366	3366		
DSYESYGNSR	10	Unmodified	_DSYESYGNSR_			0	0	0	P38159;Q96E39	P38159	P38159	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.241449	1176.46835	2.0165	0.0011882	1.9441	0.0011455	3.9606	0.0023337	589.242576111317	3.5189	0.24827	3.5189	3.4746	3.7228	0	642	40	0.894250814548268	0.0264049676271125	0.894250814548268	362.377365508858	0	10.7000882184192						566	29	5	NaN	NaN	NaN	0.0010551	1	8773	76.605	67.211	1	244800			3367	1004	2868	2932	3367	3367		
DSYGGPPR	8	Unmodified	_DSYGGPPR_			0	0	0	P38159;Q96E39	P38159	P38159	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	424.698492	847.382431	0.099936	4.2443E-05	0.87053	0.00036971	0.97047	0.00041216	424.698800447326	2.6853	0.23059	2.6853	2.6321	2.8627	0	828	49	0.767766820543916	0.0327683119781043	0.767766820543916	312.518503259452	0	13.3382995197435						374	27	2	NaN	NaN	NaN	0.015912	1	1515	58.687	30.982	1	81410			3368	1004	2869	2933	3368	3368		
DSYLILETLPTEYDSR	16	Unmodified	_DSYLILETLPTEYDSR_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.970196	1913.92584	1.3226	0.001267	1.9163	0.0018358	3.239	0.0031028	958.472594947517	17.353	0.28374	17.353	17.229	17.513	0	237	64	1.16593139812432	0.0418780448686187	1.16593139812432	470.354537562739	0	16.894243057438						1237	33	6	NaN	NaN	NaN	2.1332E-12	1	29927	144.51	130.74	1	620370			3369	746	2870	2934	3369	3369		
DSYVGDEAQSK	11	Unmodified	_DSYVGDEAQSK_			0	0	0	P60709;P63261;P68133;P68032;P62736;P63267	P60709;P63261;P68133	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.764757	1197.51496	1.8902	0.0011337	0.46566	0.00027929	2.3559	0.001413	599.765173465171	3.581	0.43445	3.581	3.4923	3.9268	0	630	49	0.902373728295776	0.032478149233901	0.902373728295776	365.594528461051	0	13.1584434277366						816	50	3	NaN	NaN	NaN	5.7518E-05	1	9374	104.39	94.315	1	852930			3370	1310;1436;1444	2871	2935	3370	3370		
DSYVGDEAQSK	11	Unmodified	_DSYVGDEAQSK_			0	0	0	P60709;P63261;P68133;P68032;P62736;P63267	P60709;P63261;P68133	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.764757	1197.51496	2.3371	0.0014017	0.46671	0.00027991	2.8039	0.0016817	599.764568956194	3.2084	0.34594	3.2084	3.1375	3.4834	0	630	199	0.902373728295776	0.133676276541856	0.902373728295776	365.594528456693	0	54.158619378763						3211	40	5	NaN	NaN	NaN	2.9496E-17	1	9375	191.25	168.86	1	7691500			3371	1310;1436;1444	2871	2935	3371	3371		
DSYVGDEAQSK	11	Unmodified	_DSYVGDEAQSK_			0	0	0	P60709;P63261;P68133;P68032;P62736;P63267	P60709;P63261;P68133	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.764757	1197.51496	2.411	0.0014461	7.3757	0.0044237	9.7868	0.0058698	599.768416068644	3.8824	0.4079	3.8824	3.7406	4.1484	0	609	52	0.916577990479294	0.0344865119804736	0.916577990479294	371.349321570988	0	13.9721256241401						330	47	2	NaN	NaN	NaN	0.014561	1	9378	57.888	34.313	1	230170			3372	1310;1436;1444	2871	2935	3372	3372		
DTAAWTVGR	9	Unmodified	_DTAAWTVGR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.745973	975.477394	-0.069371	-3.3905E-05	0.02933	1.4335E-05	-0.040042	-1.957E-05	488.746137958624	6.8087	0.15961	6.8087	6.7555	6.9151	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	336.779345171804	0	9.11719302995891						302	19	3	NaN	NaN	NaN	0.00091607	1	3741	79.809	49.248	1	106260			3373	1780	2872	2936	3373	3373		
DTAEGVSQELISAGLVDGR	19	Unmodified	_DTAEGVSQELISAGLVDGR_			0	0	0	O95747	O95747	O95747	OXSR1	Serine/threonine-protein kinase OSR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.981626	1915.9487	2.1298	0.0020424	-1.7733	-0.0017006	0.35643	0.00034181	959.480970196066	15.464	0.17747	15.464	15.402	15.579	0	267	88	1.14597988355104	0.0578475133793424	1.14597988355104	462.302290845366	0	23.336393892107						732	21	4	NaN	NaN	NaN	2.1517E-19	1	29972	151.18	134.42	1	194280			3374	449	2873	2937	3374	3374		
DTAYPETNDAIPMISK	16	Unmodified	_DTAYPETNDAIPMISK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.419284	1764.82402	2.0147	0.0017799	3.0578	0.0027013	5.0726	0.0044812	884.425764055201	12.032	0.25718	12.032	11.917	12.174	0	306	70	1.12000185836644	0.0460307788165002	1.12000185836644	452.100502166409	0	18.5808068643774						1291	30	5	NaN	NaN	NaN	0.058855	1	26258	32.61	26.233	1	287680			3375	3321	2874	2938	3375	3375		
DTDDVPMILVGNK	13	Unmodified	_DTDDVPMILVGNK_			0	0	0	P61224;A6NIZ1	P61224	P61224	RAP1B	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.855592	1415.69663	1.203	0.00085274	-1.6683	-0.0011826	-0.46531	-0.00032984	708.854721623894	13.708	0.25712	13.708	13.637	13.895	0	498	73	0.991429299781895	0.048428051596847	0.991429299781895	400.969215636486	0	19.5860238020633						769	30	4	NaN	NaN	NaN	2.0488E-05	1	15960	83.358	74.884	1	243240			3376	1336	2875	2939	3376	3376		
DTDEADLVLAK	11	Unmodified	_DTDEADLVLAK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.300975	1188.5874	1.1263	0.00067051	0.92987	0.00055356	2.0562	0.0012241	595.301432550846	9.1681	0.26605	9.1681	9.1149	9.381	0	576	46	0.938871150116794	0.0303618936649183	0.938871150116794	380.413912031337	0	12.3020999679394						338	31	2	NaN	NaN	NaN	0.0023408	1	9117	74.424	52.038	1	130350			3377	1071	2876	2940	3377	3377		
DTDIQGFLK	9	Unmodified	_DTDIQGFLK_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.769114	1035.52368	-0.31143	-0.00016156	-1.0165	-0.00052735	-1.328	-0.00068891	518.768749199522	11.562	0.19512	11.562	11.5	11.695	0	711	55	0.847456455381371	0.0366649158136713	0.847456455381371	343.956061221348	0	14.8811422087846						485	23	4	NaN	NaN	NaN	0.0036875	1	5128	49.325	40.562	1	117420			3378	2239	2877	2941	3378	3378		
DTDIVDEAIYYFK	13	Unmodified	_DTDIVDEAIYYFK_			0	0	0	O15145	O15145	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.379954	1590.74536	0.57327	0.00045654	1.1321	0.00090156	1.7053	0.0013581	796.380745816842	19.206	0.09753	19.206	19.162	19.259	0	408	94	1.0518390438467	0.062229876704917	1.0518390438467	424.947851413678	0	25.1411587677731						472	12	4	NaN	NaN	NaN	4.7078E-11	1	21292	148.9	130.09	1	149440			3379	149	2878	2942	3379	3379		
DTDSEEEIR	9	Unmodified	_DTDSEEEIR_			0	0	0	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.235832	1092.45711	1.7148	0.00093841	1.1577	0.00063351	2.8725	0.0015719	547.236566354363	3.0577	0.44332	3.0577	2.9868	3.4301	0	684	61	0.86578508874114	0.0407274835895337	0.86578508874114	351.154706839052	0	16.5187039441506						1051	51	4	NaN	NaN	NaN	1.6E-12	1	6513	187.8	158.49	1	593270			3380	619	2879	2943	3380	3380		
DTDSEEEIREAFR	13	Unmodified	_DTDSEEEIREAFR_			0	0	1	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.909391	1595.70634	-0.03575	-1.9052E-05	-0.13752	-7.3288E-05	-0.17327	-9.2339E-05	532.909356586855	9.177	0.24833	9.177	9.1238	9.3721	0	735	46	0.831145085810763	0.0306029596118851	0.831145085810763	503.663459118823	0	18.5450082789818						740	29	4	NaN	NaN	NaN	9.8348E-17	1	21443	148.9	127.81	1	688410			3381	619	2880	2944	3381	3381		
DTDSEEEIREAFR	13	Unmodified	_DTDSEEEIREAFR_			0	0	1	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.860448	1595.70634	2.827	0.0022584	-0.18521	-0.00014796	2.6418	0.0021104	798.860691184079	9.177	0.31038	9.177	9.1149	9.4253	0	336	61	1.09998710857178	0.0400626050188091	1.09998710857178	444.387972834532	0	16.1850440719209						1120	36	5	NaN	NaN	NaN	2.5948E-15	1	21444	154.66	120.94	1	681930			3382	619	2880	2944	3382	3382		
DTDSEEEIREAFRVFDK	17	Unmodified	_DTDSEEEIREAFRVFDK_			0	0	2	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.995636	2084.96508	0.44985	0.00031309	0.72742	0.00050628	1.1773	0.00081937	696.330342326483	15.101	0.097547	15.101	15.065	15.163	0	570	19	0.942920803299286	0.0121472776321595	0.942920803299286	570.244133772167	0	7.34623076169657						176	12	4	NaN	NaN	NaN	0.0045589	1	33098	81.48	72.727	1	35839			3383	619	2881	2945	3383	3383		
DTEDVPMILVGNK	13	Unmodified	_DTEDVPMILVGNK_			0	0	0	P62834	P62834	P62834	RAP1A	Ras-related protein Rap-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.863417	1429.71228	1.088	0.00077886	-0.60586	-0.00043371	0.48215	0.00034515	716.364835841773	13.691	0.12414	13.691	13.637	13.762	0	498	103	0.991429299781895	0.0686064539658676	0.991429299781895	400.93118073006	0	27.7442542804504						628	15	4	NaN	NaN	NaN	3.6721E-05	1	16380	62.271	49.675	1	170540			3384	1401	2882	2946	3384	3384		
DTEMLATGAQDGK	13	Unmodified	_DTEMLATGAQDGK_			0	0	0	Q2TAY7	Q2TAY7	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.806099	1335.59764	1.6108	0.0010773	2.0512	0.0013719	3.662	0.0024492	669.308780884276	5.3366	0.16847	5.3366	5.2745	5.443	0	528	49	0.971237000454584	0.032312153640667	0.971237000454584	393.030540100831	0	13.0757613139413						580	20	5	NaN	NaN	NaN	0.00053612	1	13448	69.276	38.683	1	154600			3385	1926	2883	2947	3385	3385		
DTEPLIQTAK	10	Unmodified	_DTEPLIQTAK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.300778	1114.587	1.1666	0.00065133	-0.7044	-0.00039327	0.46223	0.00025806	558.300613705802	6.2323	0.37245	6.2323	6.0993	6.4717	0	633	67	0.900343422309015	0.0446884460712992	0.900343422309015	365.080946440931	0	18.1207523511898						1101	43	4	NaN	NaN	NaN	0.032281	1	7118	39.01	29.617	1	552820			3386	1113	2884	2948	3386	3386		
DTEQVDNWMSK	11	Unmodified	_DTEQVDNWMSK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.792992	1351.57143	1.3741	0.00092996	0.72334	0.00048955	2.0974	0.0014195	676.793710482369	8.6891	0.15982	8.6891	8.6357	8.7955	0	537	40	0.965173861991602	0.0262772407481359	0.965173861991602	390.529696818133	0	10.6323257049369						305	19	3	NaN	NaN	NaN	0.00015467	1	13920	66.664	52.669	1	95315			3387	1703	2885	2949	3387	3387		
DTFEHDPSESIDEFNK	16	Unmodified	_DTFEHDPSESIDEFNK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.274399	1908.80137	-0.85106	-0.00054236	0.19519	0.00012439	-0.65587	-0.00041797	637.274475505423	9.4342	0.16846	9.4342	9.3632	9.5317	0	735	55	0.831145085810763	0.036700593052475	0.831145085810763	502.952747427303	0	22.2087147275228						520	20	5	NaN	NaN	NaN	1.3739E-06	1	29805	133.49	133.3	1	178130			3388	3113	2886	2950	3388	3388		
DTFEHDPSESIDEFNK	16	Unmodified	_DTFEHDPSESIDEFNK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.40796	1908.80137	1.9154	0.00183	0.60834	0.00058121	2.5238	0.0024112	955.408322608258	9.4342	0.13298	9.4342	9.3721	9.5051	0	318	46	1.11199926528787	0.0300076659427861	1.11199926528787	448.606163773285	0	12.1057848890742						405	16	4	NaN	NaN	NaN	0.054959	1	29806	21.361	18.073	1	108590			3389	3113	2886	2950	3389	3389		
DTFNHLTTWLEDAR	14	Unmodified	_DTFNHLTTWLEDAR_			0	0	0	P61019	P61019	P61019	RAB2A	Ras-related protein Rab-2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.609276	1717.806	-1.1859	-0.00068024	-1.0069	-0.00057754	-2.1928	-0.0012578	573.608623845878	15.402	0.12426	15.402	15.349	15.473	0	753	52	0.81889964927511	0.034702651471917	0.81889964927511	495.939617843457	0	21.0165185983067						523	15	5	NaN	NaN	NaN	4.931E-06	1	24988	133.49	76.195	1	188120			3390	1322	2887	2951	3390	3390		
DTGIFLDLMHLK	12	Unmodified	_DTGIFLDLMHLK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.873588	1401.73262	0.95778	0.00067224	0.6537	0.00045882	1.6115	0.0011311	701.874300167189	18.133	0.16844	18.133	18.089	18.257	0	426	52	1.03977710643793	0.0341872929561484	1.03977710643793	420.563302638813	0	13.8278874817452						658	20	5	NaN	NaN	NaN	3.2386E-05	1	15514	94.804	81.629	1	383150			3391	673	2888	2952	3391	3391		
DTHDQLSEPSEVR	13	Unmodified	_DTHDQLSEPSEVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.849884	1511.68521	2.4871	0.0018824	-1.5634	-0.0011833	0.92368	0.00069909	756.848758594989	4.5297	0.133	4.5297	4.4943	4.6273	0	522	55	0.975277694896658	0.0363411222858506	0.975277694896658	394.194527526254	0	14.6886077721306						362	16	3	NaN	NaN	NaN	6.1864E-08	1	18846	97.594	85.637	1	111200			3392	1816	2889	2953	3392	3392		
DTHDQLSEPSEVR	13	Unmodified	_DTHDQLSEPSEVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.902348	1511.68521	-0.38347	-0.00019362	2.6258	0.0013258	2.2423	0.0011321	504.903797043344	4.5297	0.11525	4.5297	4.4943	4.6095	0	777	40	0.802556497112065	0.0265742584315366	0.802556497112065	486.57134905856	0	16.1113551778499						267	14	4	NaN	NaN	NaN	0.00030541	1	18847	110.88	100.63	1	74254			3393	1816	2889	2953	3393	3393		
DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK	34	Unmodified	_DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK_			0	0	0	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	984.184691	3932.70966	0.99005	0.00097439	-0.1461	-0.00014379	0.84395	0.0008306	984.686225348278	12.334	0.12414	12.334	12.272	12.396	0	582	106	0.934820374997243	0.070923047443334	0.934820374997243	751.446842055621	0	57.0108455652901						1565	15	6	NaN	NaN	NaN	2.56E-07	1	38753	36.723	36.723	1	410820			3394	1066	2890	2954	3394	3394		
DTICNQDER	9	Unmodified	_DTICNQDER_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.743302	1149.47205	1.3633	0.00078489	0.19899	0.00011457	1.5623	0.00089946	575.743386253114	2.2419	0.17735	2.2419	2.2242	2.4015	0	669	22	0.875957769340875	0.0142358237480561	0.875957769340875	355.061080606253	0	5.77035462235631						138	21	2	NaN	NaN	NaN	0.0012131	1	8044	84.368	76.186	1	27459			3395	3280	2891	2955	3395	3395		
DTILQTVDLVSQETGEK	17	Unmodified	_DTILQTVDLVSQETGEK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.989711	1874.9473	-1.0873	-0.00068067	0.44816	0.00028054	-0.63919	-0.00040012	626.324469165617	16.714	0.070954	16.714	16.688	16.759	0	645	25	0.892219381832517	0.0162548450794181	0.892219381832517	539.981049090392	0	9.83761222577164						141	9	3	NaN	NaN	NaN	0.010857	1	29041	42.495	33.339	1	30324			3396	2866	2892	2956	3396	3396		
DTILQTVDLVSQETGEK	17	Unmodified	_DTILQTVDLVSQETGEK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.480928	1874.9473	0.96931	0.00090968	0.0075883	7.1214E-06	0.9769	0.0009168	938.982212645815	16.714	0.19509	16.714	16.617	16.812	0	264	73	1.14797626962532	0.0479100040486096	1.14797626962532	463.18046114747	0	19.3305195899692						526	23	2	NaN	NaN	NaN	6.0868E-14	1	29042	142.03	98.413	1	251690			3397	2866	2892	2956	3397	3397		
DTIQHQQGEAVWVSEGK	17	Unmodified	_DTIQHQQGEAVWVSEGK_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.463404	1910.91225	2.0304	0.001942	-0.37522	-0.00035889	1.6551	0.0015831	956.46311732698	7.0126	0.070931	7.0126	6.986	7.0569	0	249	28	1.15795408347545	0.0179551284989976	1.15795408347545	467.141677125811	0	7.24345547006226						137	9	3	NaN	NaN	NaN	0.0036857	1	29850	22.039	21.3	1	26334			3398	3196	2893	2957	3398	3398		
DTLENTIGHR	10	Unmodified	_DTLENTIGHR_			0	0	0	P42126	P42126	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.291276	1154.568	1.8601	0.0010757	-0.89632	-0.00051833	0.96382	0.00055737	578.29069568744	5.0706	0.19506	5.0706	4.9819	5.177	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	370.684539165177	0	9.86617017218725						314	23	2	NaN	NaN	NaN	3.2992E-07	1	8187	130.31	102.57	1	188090			3399	1041	2894	2958	3399	3399		
DTLFCYHK	8	Unmodified	_DTLFCYHK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.250034	1082.48552	0.29644	0.00016074	2.0154	0.0010928	2.3118	0.0012536	542.251011209891	6.5161	0.1596	6.5161	6.4717	6.6313	0	702	31	0.853568545818287	0.0203665630059481	0.853568545818287	346.239500695807	0	8.26144384140696						263	19	3	NaN	NaN	NaN	0.040017	1	6261	32.128	27.221	1	74277			3400	2841	2895	2959	3400	3400		
DTLGLFLR	8	Unmodified	_DTLGLFLR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.77146	933.528367	-1.0041	-0.00046967	-0.91447	-0.00042777	-1.9185	-0.00089743	467.770948028061	15.056	0.1951	15.056	14.95	15.145	0	717	43	0.84338031290707	0.0285409346814225	0.84338031290707	342.79188551615	0	11.6004614574351						399	23	4	NaN	NaN	NaN	0.036248	1	2946	51.456	22.146	1	171130			3401	350	2896	2960	3401	3401		
DTLLALHQHGHSGPFESK	18	Unmodified	_DTLLALHQHGHSGPFESK_			0	0	0	Q7Z5L9	Q7Z5L9	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.665784	1972.97552	0.50272	0.00033113	0.95613	0.00062977	1.4589	0.0009609	659.000412469718	6.9328	0.14185	6.9328	6.8885	7.0303	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	545.927432142503	0	9.82584425888149						188	17	3	NaN	NaN	NaN	2.6597E-05	1	31170	59.77	48.799	1	34920			3402	2146	2897	2961	3402	3402		
DTLQEANDILNNLK	14	Unmodified	_DTLQEANDILNNLK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.912484	1599.81041	0.55087	0.0004412	2.5466	0.0020396	3.0975	0.0024808	800.914165256218	16.794	0.15962	16.794	16.697	16.856	0	363	61	1.08195024817156	0.0401012633059039	1.08195024817156	437.091533993068	0	16.2003037783473						451	19	4	NaN	NaN	NaN	1.3148E-07	1	21580	128.97	110.47	1	100840			3403	639	2898	2962	3403	3403		
DTLSIHYLMLPR	12	Unmodified	_DTLSIHYLMLPR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.930633	1457.77007	-0.71689	-0.00034908	-2.3425	-0.0011406	-3.0594	-0.0014897	487.263222033959	14.285	0.17733	14.285	14.223	14.4	0	750	58	0.820941264895493	0.038785319725911	0.820941264895493	497.884385182438	0	23.5225172513381						521	21	4	NaN	NaN	NaN	0.019695	1	17203	30.918	19.563	1	153300			3404	1036	2899	2963	3404	3404		
DTLSIHYLMLPR	12	Unmodified	_DTLSIHYLMLPR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.930633	1457.77007	-1.8626	-0.00090695	-0.60002	-0.00029217	-2.4626	-0.0011991	486.930196766507	14.285	0.070932	14.285	14.258	14.329	0	801	31	0.78619514174348	0.0204602376573505	0.78619514174348	476.811551692716	0	12.4087229078632						139	9	3	NaN	NaN	NaN	0.020829	1	17205	23.836	21.357	1	24938			3405	1036	2899	2963	3405	3405		
DTLSIHYLMLPR	12	Unmodified	_DTLSIHYLMLPR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.892312	1457.77007	1.6618	0.001213	1.0253	0.00074837	2.6872	0.0019613	729.893204943034	14.285	0.18617	14.285	14.196	14.382	0	393	67	1.0618830335572	0.044190530874429	1.0618830335572	429.343258577476	0	17.8672282391956						709	22	4	NaN	NaN	NaN	9.1821E-07	1	17206	114.39	93.306	1	228370			3406	1036	2899	2963	3406	3406		
DTLSIHYLMLPR	12	Oxidation (M)	_DTLSIHYLM(Oxidation (M))LPR_	DTLSIHYLM(1)LPR	DTLSIHYLM(100)LPR	0	1	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.889769	1473.76499	1.8076	0.0013338	0.64711	0.0004775	2.4547	0.0018113	737.890154826095	13.336	0.15963	13.336	13.221	13.38	0	339	37	1.09798411722691	0.0240309347429271	1.09798411722691	443.894442455478	0	9.71525745412134						312	19	3	NaN	NaN	NaN	6.9114E-05	1	17709	99.855	77.812	1	101270			3407	1036	2899	2964	3407	3407	373	
DTLVADNLDQATR	13	Unmodified	_DTLVADNLDQATR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.357345	1430.70014	1.7806	0.0012756	-2.1308	-0.0015264	-0.35013	-0.00025082	716.355882819372	9.0351	0.22172	9.0351	8.9464	9.1681	0	477	34	1.0055473068722	0.0221731807232346	1.0055473068722	406.637778136986	0	8.96671184130764						373	26	3	NaN	NaN	NaN	0.00044477	1	16412	70.195	55.74	1	94110			3408	3042	2900	2965	3408	3408		
DTLVQGLNEAGDDLEAVAK	19	Unmodified	_DTLVQGLNEAGDDLEAVAK_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.489284	1956.96402	0.86658	0.00084881	2.0112	0.0019699	2.8777	0.0028187	979.49064360889	16.892	0.19511	16.892	16.803	16.998	0	195	103	1.19381749893585	0.0677141626753568	1.19381749893585	481.527973679	0	27.3126031168913						1114	23	4	NaN	NaN	NaN	7.702E-15	1	30839	164.28	140.12	1	396250			3409	3463	2901	2966	3409	3409		
DTLWHLFNTLQR	12	Unmodified	_DTLWHLFNTLQR_			0	0	0	Q7Z434	Q7Z434	Q7Z434	MAVS	Mitochondrial antiviral-signaling protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.272047	1542.79431	-3.244	-0.0016715	2.394	0.0012336	-0.84992	-0.00043794	515.273652129311	17.309	0.070941	17.309	17.273	17.344	0	789	22	0.794378096728713	0.0143151894202939	0.794378096728713	481.524969472824	0	8.67738067928968						94	9	3	NaN	NaN	NaN	1.6666E-05	1	19824	126.29	118.29	1	16507			3410	2135	2902	2967	3410	3410		
DTLYEAVR	8	Unmodified	_DTLYEAVR_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.748182	965.481811	0.66833	0.0003233	0.7363	0.00035618	1.4046	0.00067949	483.748425042553	6.8974	0.10638	6.8974	6.8353	6.9417	0	696	43	0.857641857947968	0.0285131915088889	0.857641857947968	348.421085802361	0	11.583619727922						392	13	4	NaN	NaN	NaN	0.0088013	1	3549	73.637	39.824	1	229930			3411	1413	2903	2968	3411	3411		
DTNGSQFFITTVK	13	Unmodified	_DTNGSQFFITTVK_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.367181	1456.71981	1.0084	0.00073546	-0.032507	-2.371E-05	0.97585	0.00071175	729.367177365651	12.6	0.15073	12.6	12.529	12.68	0	462	52	1.01562323939346	0.0342250726954365	1.01562323939346	410.642167990827	0	13.8380626852247						732	18	5	NaN	NaN	NaN	2.1016E-07	1	17149	106.11	100.08	1	209400			3412	816	2904	2969	3412	3412		
DTPDEPWAFPAR	12	Unmodified	_DTPDEPWAFPAR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.325316	1400.63608	1.4446	0.0010131	-1.0732	-0.00075266	0.37137	0.00026045	701.324506564643	12.68	0.28376	12.68	12.573	12.857	0	540	61	0.963152256458504	0.0404405239988286	0.963152256458504	389.573492386252	0	16.3572852189362						1164	33	4	NaN	NaN	NaN	3.5209E-17	1	15460	227.27	199.18	1	507640			3413	2108	2905	2970	3413	3413		
DTPGHGSGWAETPR	14	Unmodified	_DTPGHGSGWAETPR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.891895	1466.65385	0.31278	0.00015323	3.7836	0.0018535	4.0963	0.0020068	489.893799853069	4.5031	0.11526	4.5031	4.4677	4.5829	0	762	37	0.812773098473386	0.0245147306165753	0.812773098473386	492.902494845655	0	14.8668452537062						245	14	3	NaN	NaN	NaN	0.025598	1	17466	47.361	32.906	1	69925			3414	343	2906	2971	3414	3414		
DTPGHGSGWAETPR	14	Unmodified	_DTPGHGSGWAETPR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.334204	1466.65385	2.6059	0.0019136	4.5639	0.0033515	7.1698	0.005265	734.338968220334	4.5209	0.16846	4.5209	4.4499	4.6184	0	459	61	1.01763759082241	0.0403065325213282	1.01763759082241	411.430383161235	0	16.2959115000351						458	20	4	NaN	NaN	NaN	0.070311	1	17468	24.744	3.6555	1	117560			3415	343	2906	2971	3415	3415		
DTPTQEDWLVSVLPEGSR	18	Unmodified	_DTPTQEDWLVSVLPEGSR_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.99728	2027.98	1.5347	0.0015577	-0.15016	-0.00015241	1.3846	0.0014053	1015.49848259706	17.77	0.15072	17.77	17.672	17.823	0	222	43	1.17589687683038	0.0278975958316861	1.17589687683038	474.182693812922	0	11.2497595690793						485	18	4	NaN	NaN	NaN	0.00012024	1	32110	78.888	60.79	1	101670			3416	3005	2907	2972	3416	3416		
DTQSGSLLFIGR	12	Unmodified	_DTQSGSLLFIGR_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.343509	1292.67246	1.723	0.0011153	-0.038861	-2.5156E-05	1.6841	0.0010902	647.343448489718	13.593	0.28376	13.593	13.469	13.753	0	528	112	0.971237000454584	0.0746445028733628	0.971237000454584	393.164178539384	0	30.2166666230285						1268	33	3	NaN	NaN	NaN	3.0868E-23	1	12162	224.13	193.54	1	352530			3417	1164	2908	2973	3417	3417		
DTQSVSAIGEEK	12	Unmodified	_DTQSVSAIGEEK_			0	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.306789	1262.59903	1.9802	0.0012521	0.92755	0.0005865	2.9077	0.0018386	632.307583408031	4.7248	0.21284	4.7248	4.6716	4.8844	0	579	37	0.936845902828289	0.024301288635538	0.936845902828289	379.337885639068	0	9.83982469419971						326	25	4	NaN	NaN	NaN	0.0014504	1	11289	72.922	45.975	1	80887			3418	3078	2909	2974	3418	3418		
DTQTSITDSCAVYR	14	Unmodified	_DTQTSITDSCAVYR_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.864676	1615.7148	2.6898	0.0021757	-2.4679	-0.0019962	0.22188	0.00017947	808.86281592145	7.1989	0.17738	7.1989	7.1457	7.3231	0	390	49	1.06389100039157	0.0321341264646959	1.06389100039157	429.759574761648	0	12.980604704544						280	21	2	NaN	NaN	NaN	2.428E-09	1	22058	149.58	127.54	1	186630			3419	3439	2910	2975	3419	3419		
DTSEDIEELVEPVAAHGPK	19	Unmodified	_DTSEDIEELVEPVAAHGPK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.49457	2034.97458	1.7163	0.0017481	0.56384	0.00057427	2.2802	0.0023223	1018.49617245491	14.356	0.22166	14.356	14.24	14.462	-1.7764E-15	132	130	1.23554629282893	0.085503458909749	1.23554629282893	498.224789964615	0	34.4786294967712						1268	26	4	NaN	NaN	NaN	2.7018E-07	1	32244	80.815	78.967	1	339880			3420	2641	2911	2976	3420	3420		
DTSFEQHVLWHTGGK	15	Unmodified	_DTSFEQHVLWHTGGK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	436.212772	1740.82198	-2.5411	-0.0011085	2.1962	0.00095802	-0.34488	-0.00015044	436.213789173604	8.6091	0.11544	8.6091	8.5736	8.6891	0	777	22	0.802556497112065	0.0143072230251827	0.802556497112065	647.98441910547	0	11.5516572781428						176	14	4	NaN	NaN	NaN	0.043831	1	25619	28.328	28.14	1	42245			3421	1127	2912	2977	3421	3421		
DTSFEQHVLWHTGGK	15	Unmodified	_DTSFEQHVLWHTGGK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.281271	1740.82198	-0.17811	-0.00010353	0.72313	0.00042034	0.54502	0.00031681	581.281721400033	8.6091	0.25737	8.6091	8.5559	8.8133	0	717	34	0.84338031290707	0.0224234600075238	0.84338031290707	510.71152413231	0	13.5785946879511						708	30	5	NaN	NaN	NaN	2.2448E-08	1	25620	187.51	171.22	1	477740			3422	1127	2912	2977	3422	3422		
DTSFEQHVLWHTGGK	15	Unmodified	_DTSFEQHVLWHTGGK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.418268	1740.82198	2.3294	0.0020299	-1.6979	-0.0014795	0.63156	0.00055035	871.416456413751	8.6091	0.11544	8.6091	8.5736	8.6891	0	309	49	1.11800162319566	0.0320191966216983	1.11800162319566	451.341602209432	0	12.9262741706834						294	14	4	NaN	NaN	NaN	0.0039249	1	25621	58.338	48.317	1	63469			3423	1127	2912	2977	3423	3423		
DTSFLGSDDIGNIDVR	16	Unmodified	_DTSFLGSDDIGNIDVR_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.410305	1722.80606	1.9381	0.0016714	-0.40851	-0.0003523	1.5296	0.0013191	862.411265972129	14.657	0.133	14.657	14.595	14.728	-3.5527E-15	291	40	1.12999890578964	0.0259887509871912	1.12999890578964	456.222634040868	0	10.4926264707515						259	16	3	NaN	NaN	NaN	3.1864E-09	1	25122	121.69	105.4	1	74067			3424	1151	2913	2978	3424	3424		
DTSFSGLSLEEYK	13	Unmodified	_DTSFSGLSLEEYK_			0	0	0	Q9BRT2	Q9BRT2	Q9BRT2	UQCC2	Ubiquinol-cytochrome-c reductase complex assembly factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.348654	1474.68275	0.83067	0.00061333	3.0901	0.0022816	3.9208	0.0028949	738.350722169128	13.088	0.079813	13.088	13.043	13.123	0	432	34	1.035754240522	0.022130347528504	1.035754240522	418.733633704213	0	8.94683359546497						120	10	2	NaN	NaN	NaN	0.0066639	1	17725	41.824	29.867	1	40808			3425	2714	2914	2979	3425	3425		
DTSNHFHVFVGDLSPEITTEDIK	23	Unmodified	_DTSNHFHVFVGDLSPEITTEDIK_			0	0	0	Q01085	Q01085	Q01085	TIAL1	Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	867.753764	2600.23946	1.516	0.0013155	-0.83124	-0.00072131	0.68474	0.00059419	868.087510185443	14.311	0.097538	14.311	14.267	14.365	-1.7764E-15	480	31	1.00353128488872	0.0201644018514301	1.00353128488872	606.103462579701	0	12.1787072979548						255	12	4	NaN	NaN	NaN	6.6322E-13	1	37243	51.542	47.675	1	56580			3426	1512	2915	2980	3426	3426		
DTSVEDALER	10	Unmodified	_DTSVEDALER_			0	0	0	Q96A35	Q96A35	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.7673	1133.52005	1.8304	0.0010392	-0.9368	-0.00053188	0.89359	0.00050735	567.76672236209	7.6777	0.097599	7.6777	7.6422	7.7398	0	642	28	0.894250814548268	0.0182854326605286	0.894250814548268	362.53645982795	0	7.41306120757542						190	12	3	NaN	NaN	NaN	0.071761	1	7619	15.879	12.271	1	47781			3427	2469	2916	2981	3427	3427		
DTSVEGSEMVPGK	13	Unmodified	_DTSVEGSEMVPGK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.308474	1334.6024	2.1873	0.0014618	1.384	0.00092493	3.5713	0.0023867	668.30989246016	6.0638	0.26602	6.0638	5.9929	6.2589	0	546	58	0.959108205975751	0.0384211546657859	0.959108205975751	388.125346824226	0	15.548010002557						858	31	3	NaN	NaN	NaN	1.0033E-16	1	13413	175.64	162.81	1	398830			3428	758	2917	2982	3428	3428		
DTTALSFFHMLNGAALR	17	Unmodified	_DTTALSFFHMLNGAALR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.317327	1863.93015	-0.43982	-0.00027371	-0.032115	-1.9986E-05	-0.47193	-0.00029369	622.651915347431	18.674	0.062054	18.674	18.639	18.701	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	543.692452603506	0	9.83258166153837						146	8	4	NaN	NaN	NaN	0.00012137	1	28785	76.255	67.881	1	33492			3429	1055	2918	2983	3429	3429		
DTTINEIEDTFR	12	Unmodified	_DTTINEIEDTFR_			0	0	0	Q16864	Q16864	Q16864	ATP6V1F	V-type proton ATPase subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.343903	1452.67325	0.8057	0.00058602	3.1676	0.0023039	3.9733	0.00289	727.345581268655	15.012	0.12414	15.012	14.959	15.083	0	453	40	1.02166545906632	0.0261684967549374	1.02166545906632	413.096003274516	0	10.5808621846195						295	15	4	NaN	NaN	NaN	3.244E-05	1	17044	110.88	98.866	1	106170			3430	1913	2919	2984	3430	3430		
DTTMYAVSADSK	12	Unmodified	_DTTMYAVSADSK_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.789918	1287.56528	1.9106	0.0012319	2.7138	0.0017499	4.6244	0.0029818	644.790921150815	5.9663	0.16855	5.9663	5.913	6.0815	0	549	34	0.957085760909907	0.0222468989208282	0.957085760909907	387.451884947534	0	9.00609252917673						214	20	3	NaN	NaN	NaN	0.027149	1	11977	45.939	29.482	1	68350			3431	1590	2920	2985	3431	3431		
DTVATQLSEAVDATR	15	Unmodified	_DTVATQLSEAVDATR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.894291	1575.77403	1.8604	0.0014677	1.5144	0.0011947	3.3748	0.0026624	788.895727518779	12.635	0.23942	12.635	12.511	12.751	0	411	40	1.04982941439551	0.0261287930352008	1.04982941439551	424.170728957568	0	10.5570191085798						674	28	5	NaN	NaN	NaN	3.8181E-17	1	20851	171.2	165.33	1	319250			3432	272	2921	2986	3432	3432		
DTVDPVQDEMLAR	13	Unmodified	_DTVDPVQDEMLAR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.85358	1487.69261	1.9876	0.0014805	2.5192	0.0018764	4.5068	0.0033569	744.855761429235	10.41	0.20398	10.41	10.356	10.56	0	429	46	1.03776581230406	0.0301777503680323	1.03776581230406	419.512764439206	0	12.1992373725838						729	24	6	NaN	NaN	NaN	0.00016959	1	18161	94.791	80.993	1	294720			3433	1144	2922	2987	3433	3433		
DTVLEPYADPYYDYEIER	18	Unmodified	_DTVLEPYADPYYDYEIER_			0	0	0	Q86VM9	Q86VM9	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.00751	2250.00046	1.2077	0.0013599	0.38119	0.00042922	1.5889	0.0017891	1126.50869772781	15.154	0.079823	15.154	15.109	15.189	-1.7764E-15	93	55	1.26131825079847	0.035676922009668	1.26131825079847	508.287631452113	0	14.3771313657882						241	10	2	NaN	NaN	NaN	1.06E-06	1	35179	69.201	66.654	1	82695			3434	2173	2923	2988	3434	3434		
DTVLLEFYAPWCGHCK	16	Unmodified	_DTVLLEFYAPWCGHCK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.974573	1994.90189	-0.73747	-0.00049114	0.63649	0.00042388	-0.10098	-6.7252E-05	666.309117609026	16.732	0.12414	16.732	16.67	16.794	0	591	25	0.928742107665821	0.01621208273842	0.928742107665821	561.836948846305	0	9.80740188801167						257	15	4	NaN	NaN	NaN	0.0033479	1	31533	50.09	50.09	1	56503			3435	680	2924	2989	3435	3435		
DTVLLEFYAPWCGHCK	16	Unmodified	_DTVLLEFYAPWCGHCK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.458221	1994.90189	0.12498	0.00012479	1.7197	0.0017171	1.8447	0.0018419	998.961718998622	16.741	0.11527	16.741	16.679	16.794	0	138	37	1.23157729878518	0.0238172335935567	1.23157729878518	496.691911916814	0	9.60542817882555						423	14	4	NaN	NaN	NaN	1.4854E-08	1	31534	101.45	99.603	1	83552			3436	680	2924	2989	3436	3436		
DTVSEDTIR	9	Unmodified	_DTVSEDTIR_			0	0	0	Q96E11	Q96E11	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.251286	1034.48802	1.3018	0.00067465	1.9322	0.0010014	3.234	0.001676	518.252190521673	4.3347	0.16849	4.3347	4.2637	4.4322	0	708	37	0.849494101904619	0.0244500640244978	0.849494101904619	344.787593276549	0	9.92364598125323						244	20	2	NaN	NaN	NaN	0.048932	1	5101	49.96	26.385	1	77415			3437	2508	2925	2990	3437	3437		
DTVTISGPQAPVFEFVEQLR	20	Unmodified	_DTVTISGPQAPVFEFVEQLR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.054826	2232.14265	-0.26751	-0.00019931	0.0014971	1.1154E-06	-0.26601	-0.00019819	745.054623638954	20.031	0.053202	20.031	19.995	20.049	0	600	61	0.922661313351899	0.0405583153888894	0.922661313351899	557.74867304254	0	24.5174976577415						241	7	4	NaN	NaN	NaN	6.3734E-08	1	35009	99.909	90.753	1	79047			3438	1127	2926	2991	3438	3438		
DTVTISGPQAPVFEFVEQLR	20	Unmodified	_DTVTISGPQAPVFEFVEQLR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1117.0786	2232.14265	0.7296	0.00081502	0.39897	0.00044568	1.1286	0.0012607	1117.57991883927	20.031	0.079797	20.031	19.978	20.057	0	93	82	1.26131825079847	0.0534970810193605	1.26131825079847	508.312589339988	0	21.5593802419554						482	10	5	NaN	NaN	NaN	1.2355E-10	1	35010	80.026	76.386	1	143310			3439	1127	2926	2991	3439	3439		
DTVTISGPQAPVFEFVEQLRK	21	Unmodified	_DTVTISGPQAPVFEFVEQLRK_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.753147	2360.23761	0.063249	4.9824E-05	-0.0019258	-1.517E-06	0.061323	4.8307E-05	788.087513231575	19.055	0.15074	19.055	18.949	19.1	0	585	40	0.932794566565362	0.0263355149208984	0.932794566565362	563.685035925482	0	15.9144748548044						430	18	4	NaN	NaN	NaN	0.00056301	1	36129	43.518	37.314	1	87846			3440	1127	2927	2992	3440	3440		
DTYEETGLQGHPSQFSGR	18	Unmodified	_DTYEETGLQGHPSQFSGR_			0	0	0	O75818	O75818	O75818	RPP40	Ribonuclease P protein subunit p40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.9534	2007.89225	1.9842	0.0019941	-1.0163	-0.0010214	0.96791	0.0009727	1004.95195790102	6.6668	0.044344	6.6668	6.6491	6.6934	0	213	28	1.18187287897418	0.0179230835476791	1.18187287897418	476.624948384726	0	7.22800981626915						102	6	3	NaN	NaN	NaN	0.048128	1	31766	16.687	13.048	1	17379			3441	361	2928	2993	3441	3441		
DTYLSHFNPR	10	Unmodified	_DTYLSHFNPR_			0	0	0	P40261	P40261	P40261	NNMT	Nicotinamide N-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.301644	1248.58874	1.9589	0.0012249	1.2143	0.0007593	3.1732	0.0019842	625.302007112545	8.0148	0.1863	8.0148	7.9438	8.1302	0	528	52	0.971237000454584	0.0343673059090993	0.971237000454584	393.310905541426	0	13.9173406715358						388	22	2	NaN	NaN	NaN	7.1771E-20	1	10869	197.66	172.41	1	206400			3442	1017	2929	2994	3442	3442		
DTYYDFDAEAADHK	14	Unmodified	_DTYYDFDAEAADHK_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.841724	1659.6689	2.9939	0.0024874	-0.54558	-0.00045329	2.4483	0.0020341	830.841253873753	8.1833	0.070913	8.1833	8.1479	8.2188	0	327	28	1.10599442759226	0.01801947676188	1.10599442759226	446.666688593359	0	7.27734228547234						155	9	3	NaN	NaN	NaN	7.1306E-05	1	23317	84.999	83.947	1	32608			3443	2107	2930	2995	3443	3443		
DVACGANHTLVLDSQK	16	Unmodified	_DVACGANHTLVLDSQK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.422693	1726.83083	3.0218	0.0026121	-1.7711	-0.001531	1.2507	0.0010811	864.421710361847	6.5072	0.23054	6.5072	6.4363	6.6668	0	297	52	1.12600091227925	0.0339946501081771	1.12600091227925	454.600043017924	0	13.7246508710857						753	27	5	NaN	NaN	NaN	1.7237E-17	1	25231	180.49	128.96	1	320530			3444	3151	2931	2996	3444	3444		
DVACGANHTLVLDSQK	16	Unmodified	_DVACGANHTLVLDSQK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.617554	1726.83083	0.25297	0.00014587	1.8746	0.0010809	2.1275	0.0012268	576.618625545326	6.5072	0.12415	6.5072	6.4717	6.5959	0	675	28	0.871889544407995	0.0183108263146563	0.871889544407995	528.009127481698	0	11.0888856138712						306	15	5	NaN	NaN	NaN	0.0011535	1	25233	51.569	33.838	1	106650			3445	3151	2931	2996	3445	3445		
DVAFTVGEGEDHDIPIGIDK	20	Unmodified	_DVAFTVGEGEDHDIPIGIDK_			0	0	0	Q13451	Q13451	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.01567	2126.01678	0.69333	0.00073772	-0.23699	-0.00025217	0.45634	0.00048555	1064.51749135332	13.567	0.062079	13.567	13.54	13.602	0	78	46	1.27121832677567	0.0296921015055513	1.27121832677567	512.460498442426	0	11.9696426780852						199	8	3	NaN	NaN	NaN	2.9806E-07	1	33694	65.421	59.805	1	38020			3446	1670	2932	2997	3446	3446		
DVAPQAPVHFLVIPK	15	Unmodified	_DVAPQAPVHFLVIPK_			0	0	0	Q9BX68	Q9BX68	Q9BX68	HINT2	Histidine triad nucleotide-binding protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.969408	1629.92426	2.3762	0.0019389	-0.1949	-0.00015903	2.1813	0.0017799	816.470516252673	13.832	0.1064	13.832	13.779	13.886	0	282	64	1.13599383354359	0.0419760654050894	1.13599383354359	458.851552910557	0	16.9550064687576						511	13	4	NaN	NaN	NaN	0.0028477	1	22494	72.846	66.818	1	124900			3447	2783	2933	2998	3447	3447		
DVAQIFNNILR	11	Unmodified	_DVAQIFNNILR_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.861869	1301.70918	0.232	0.00015123	-1.232	-0.00080309	-0.99999	-0.00065186	651.861078030335	18.789	0.097563	18.789	18.754	18.851	0	573	43	0.940896116921038	0.028347578802108	0.940896116921038	380.854003229873	0	11.4744748910078						332	12	4	NaN	NaN	NaN	0.00028352	1	12407	78.816	60.48	1	132580			3448	3371	2934	2999	3448	3448		
DVATVAFCDAQSTQEIHEK	19	Unmodified	_DVATVAFCDAQSTQEIHEK_			0	0	0	Q13363	Q13363	Q13363	CTBP1	C-terminal-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.000392	2147.97935	1.6195	0.0011612	0.82455	0.0005912	2.444	0.0017524	717.335531224037	10.09	0.088666	10.09	10.055	10.143	0	528	25	0.971237000454584	0.0161650151283204	0.971237000454584	587.254824964362	0	9.77411602449763						217	11	4	NaN	NaN	NaN	0.001726	1	33991	52.201	51.107	1	50515			3449	1657	2935	3000	3449	3449		
DVAVSYYHFHR	11	Unmodified	_DVAVSYYHFHR_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	465.226438	1392.65748	-1.2088	-0.00056239	-0.79533	-0.00037001	-2.0042	-0.00093239	465.225776656688	6.7732	0.11526	6.7732	6.7377	6.853	0	843	25	0.757518876820989	0.016402423941871	0.757518876820989	459.621574986775	0	9.95210569194182						192	14	4	NaN	NaN	NaN	0.00050155	1	15227	58.916	57.116	1	50546			3450	617	2936	3001	3450	3450		
DVAVSYYHFHR	11	Unmodified	_DVAVSYYHFHR_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.336018	1392.65748	1.7289	0.0012056	1.2431	0.00086688	2.972	0.0020725	697.336509881748	6.7732	0.079824	6.7732	6.7466	6.8264	0	441	28	1.02971785871157	0.0181116473716121	1.02971785871157	416.521103208325	0	7.32616539600787						142	10	3	NaN	NaN	NaN	0.0070375	1	15229	55.235	50.084	1	28883			3451	617	2936	3001	3451	3451		
DVAWAPSIGLPTSTIASCSQDGR	23	Unmodified	_DVAWAPSIGLPTSTIASCSQDGR_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1195.07626	2388.13797	0.31315	0.00037424	0.061473	7.3465E-05	0.37462	0.0004477	1195.57789403162	16.324	0.14186	16.324	16.271	16.413	0	63	64	1.28111162701928	0.0415689526304328	1.28111162701928	516.08066364442	0	16.7455608145803						371	17	2	NaN	NaN	NaN	8.3497E-13	1	36285	107.84	96.785	1	190190			3452	1275	2937	3002	3452	3452		
DVCTELLPLIK	11	Unmodified	_DVCTELLPLIK_			0	0	0	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.862689	1299.71082	0.15859	0.00010322	-1.7513	-0.0011399	-1.5927	-0.0010366	650.861824624098	16.963	0.2483	16.963	16.874	17.122	0	558	94	0.951016745717027	0.0626785169245925	0.951016745717027	384.956828200213	0	25.3712914943391						1252	29	5	NaN	NaN	NaN	2.9061E-05	1	12349	112.8	94.465	1	799050			3453	724	2938	3003	3453	3453		
DVDDFFEHER	10	Unmodified	_DVDDFFEHER_			0	0	0	Q9UNH7	Q9UNH7	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.778199	1307.54184	1.0947	0.0007168	2.0941	0.0013712	3.1888	0.002088	654.778901004765	9.975	0.097507	9.975	9.9307	10.028	0	528	22	0.971237000454584	0.0141453664732367	0.971237000454584	393.11689350514	0	5.72546404517936						135	12	3	NaN	NaN	NaN	0.071761	1	12576	15.879	10.013	1	29664			3454	3296	2939	3004	3454	3454		
DVDDGLQAAEEVGYPVMIK	19	Unmodified	_DVDDGLQAAEEVGYPVMIK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.99589	2047.97722	1.4398	0.0014758	-1.253	-0.0012844	0.18679	0.00019146	1025.49624892459	16.174	0.13301	16.174	16.111	16.245	0	186	61	1.1997861197946	0.0397826314799248	1.1997861197946	483.783959026322	0	16.0413582390319						475	16	4	NaN	NaN	NaN	7.1174E-07	1	32501	91.993	82.415	1	94730			3455	1625	2940	3005	3455	3455		
DVDEAYMNK	9	Unmodified	_DVDEAYMNK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.734414	1083.45428	1.3757	0.00074665	0.63393	0.00034405	2.0097	0.0010907	542.73497133388	4.7958	0.2926	4.7958	4.7159	5.0085	0	678	49	0.869855008346864	0.03255936673099	0.869855008346864	352.841943732466	0	13.2071553693689						846	34	4	NaN	NaN	NaN	8.9382E-05	1	6289	133.9	123.82	1	412520		+	3456	28	2941	3006	3456	3456		
DVDEAYMNK	9	Oxidation (M)	_DVDEAYM(Oxidation (M))NK_	DVDEAYM(1)NK	DVDEAYM(70)NK	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.731871	1099.44919	1.1598	0.00063874	1.3641	0.00075125	2.5239	0.00139	550.732642454147	3.1552	0.23056	3.1552	3.0843	3.3149	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	349.475838439614	0	7.43024490162009						350	27	3	NaN	NaN	NaN	0.032159	1	6686	69.905	51.502	1	78833		+	3457	28	2941	3007	3457	3457	5	
DVDETISWIK	10	Unmodified	_DVDETISWIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.306061	1204.59757	0.12267	7.4007E-05	0.99982	0.0006032	1.1225	0.0006772	603.306484598817	13.407	0.1774	13.407	13.327	13.504	0	594	37	0.926715457081489	0.024324866464508	0.926715457081489	375.431370872986	0	9.85450053011203						186	21	2	NaN	NaN	NaN	0.0056272	1	9595	44.82	30.058	1	44831			3458	1703	2942	3008	3458	3458		
DVDFEGTDEPIFGK	14	Unmodified	_DVDFEGTDEPIFGK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.859386	1567.70422	1.4778	0.0011599	1.88	0.0014755	3.3578	0.0026354	784.86074667391	13.664	0.11527	13.664	13.611	13.726	0	390	76	1.06389100039157	0.0502338424152609	1.06389100039157	429.871414326345	0	20.2972794000017						482	14	3	NaN	NaN	NaN	5.959E-05	1	20577	105.94	101.7	1	148330			3459	1047	2943	3009	3459	3459		
DVDFELIK	8	Unmodified	_DVDFELIK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.760758	977.506963	-0.22008	-0.00010779	0.0019759	9.6772E-07	-0.2181	-0.00010682	489.760511640396	13.203	0.15963	13.203	13.15	13.309	0	693	46	0.85967808974117	0.0305477275700197	0.85967808974117	349.187987514101	0	12.4080160243653						326	19	3	NaN	NaN	NaN	0.051106	1	3786	31.952	9.566	1	189290			3460	1113	2944	3010	3460	3460		
DVDIIDHHDNTYTVK	15	Unmodified	_DVDIIDHHDNTYTVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.619841	1783.83769	0.99886	0.00059494	-0.7342	-0.0004373	0.26466	0.00015764	595.619543668595	7.261	0.17732	7.261	7.2255	7.4028	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	540.183350194486	0	13.5308468419892						508	21	6	NaN	NaN	NaN	5.883E-05	1	26786	97.594	81.307	1	279480			3461	792	2945	3011	3461	3461		
DVDIIDHHDNTYTVK	15	Unmodified	_DVDIIDHHDNTYTVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.926123	1783.83769	2.8676	0.0025606	-2.2744	-0.0020309	0.59323	0.00052971	892.924438887247	7.261	0.097577	7.261	7.2255	7.3231	0	306	67	1.12000185836644	0.0440082277490712	1.12000185836644	452.062956118328	0	17.7629076069486						479	12	4	NaN	NaN	NaN	3.1643E-06	1	26787	88.42	75.838	1	115560			3462	792	2945	3011	3462	3462		
DVDLEFLAK	9	Unmodified	_DVDLEFLAK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.279315	1048.54408	0.14574	7.6556E-05	0.10563	5.5486E-05	0.25137	0.00013204	525.279504423408	14.294	0.28373	14.294	14.214	14.498	0	702	40	0.853568545818287	0.0264710186728029	0.853568545818287	346.380317493238	0	10.7420076538374						582	33	4	NaN	NaN	NaN	0.0087065	1	5434	77.072	53.496	1	303920			3463	1265	2946	3012	3463	3463		
DVEDEETWIR	10	Unmodified	_DVEDEETWIR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.293682	1290.57281	1.4577	0.00094213	2.1372	0.0013813	3.595	0.0023234	646.294725000516	10.365	0.1862	10.365	10.285	10.472	0	558	37	0.951016745717027	0.0242844683109597	0.951016745717027	384.985477721778	0	9.83070768839644						465	22	4	NaN	NaN	NaN	4.7799E-05	1	12077	98.009	90.858	1	161980			3464	1703	2947	3013	3464	3464		
DVEDEILWVGER	12	Unmodified	_DVEDEILWVGER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.356813	1458.69907	-0.063159	-4.6129E-05	0.31244	0.00022819	0.24928	0.00018206	730.357005904631	15.89	0.16848	15.89	15.845	16.014	0	489	28	0.997481546940468	0.0181567430371361	0.997481546940468	403.301873048774	0	7.34113678373575						189	20	3	NaN	NaN	NaN	2.1243E-05	1	17227	92.445	80.426	1	62478			3465	1511	2948	3014	3465	3465		
DVEDESTGLEK	11	Unmodified	_DVEDESTGLEK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.277697	1220.54084	1.2312	0.00075259	0.70711	0.00043224	1.9383	0.0011848	611.278043871863	4.7425	0.20395	4.7425	4.6716	4.8755	0	654	52	0.886123392477847	0.0345343681296421	0.886123392477847	358.933581810152	0	13.9885083201126						401	24	4	NaN	NaN	NaN	0.00019895	1	10021	90.142	81.165	1	141280			3466	994	2949	3015	3466	3466		
DVEDFLSPLLGK	12	Unmodified	_DVEDFLSPLLGK_			0	0	0	Q13405	Q13405	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.855918	1331.69728	0.048182	3.213E-05	-1.3358	-0.00089077	-1.2876	-0.00085864	666.854829921483	19.357	0.08869	19.357	19.321	19.41	0	552	46	0.955063035883597	0.0303366841243174	0.955063035883597	386.497026658195	0	12.2767165853822						328	11	4	NaN	NaN	NaN	5.4424E-05	1	13353	111.61	99.649	1	121390			3467	1660	2950	3016	3467	3467		
DVEGSTSPQIGDK	13	Unmodified	_DVEGSTSPQIGDK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.817521	1331.62049	2.3816	0.0015881	-0.13204	-8.8049E-05	2.2495	0.0015	666.817399034065	4.5031	0.17734	4.5031	4.4499	4.6273	0	588	76	0.93076847747433	0.0506031803647153	0.93076847747433	376.665669333933	0	20.4782190886207						607	21	4	NaN	NaN	NaN	0.003874	1	13339	65.879	58.303	1	181320			3468	344	2951	3017	3468	3468		
DVESYIHR	8	Unmodified	_DVESYIHR_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.751256	1017.48796	0.18208	9.2816E-05	0.83136	0.00042379	1.0134	0.0005166	509.751644942368	5.8687	0.31927	5.8687	5.7623	6.0815	0	711	49	0.847456455381371	0.0326046192681035	0.847456455381371	344.036028659349	0	13.2362715012897						759	37	3	NaN	NaN	NaN	1.3854E-05	1	4675	161.12	118.29	1	757430			3469	3011	2952	3018	3469	3469		
DVFASEVTPSDLQK	14	Unmodified	_DVFASEVTPSDLQK_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.383028	1534.7515	1.8537	0.0014243	-2.353	-0.001808	-0.49931	-0.00038366	768.881902386841	11.146	0.1596	11.146	11.083	11.243	0	387	25	1.06589869032374	0.0160604132229905	1.06589869032374	430.763602214755	0	6.49052439579572						184	19	2	NaN	NaN	NaN	0.0028366	1	19575	42.061	31.81	1	73950			3470	2401	2953	3019	3470	3470		
DVFFYQADDEHYIPR	15	Unmodified	_DVFFYQADDEHYIPR_			0	0	0	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.93649	1913.85843	1.6619	0.001592	0.82377	0.00078912	2.4857	0.0023811	958.438598066132	13.008	0.12413	13.008	12.963	13.088	0	186	79	1.1997861197946	0.0516677795684457	1.1997861197946	484.01217598937	0	20.8435770383339						604	15	4	NaN	NaN	NaN	3.5946E-06	1	29920	78.864	75.576	1	149820			3471	815	2954	3020	3471	3471		
DVFFYQADDEHYIPR	15	Unmodified	_DVFFYQADDEHYIPR_			0	0	0	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.960086	1913.85843	0.65841	0.00042069	2.1734	0.0013887	2.8318	0.0018094	639.295620872492	13.008	0.1862	13.008	12.946	13.132	0	555	67	0.953040030838688	0.0445523806599541	0.953040030838688	576.704323127037	0	26.9595711625947						418	22	4	NaN	NaN	NaN	2.8164E-06	1	29921	74.524	72.54	1	100040			3472	815	2954	3020	3472	3472		
DVFHMVVEVPR	11	Unmodified	_DVFHMVVEVPR_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.232424	1326.67544	-2.7559	-0.0012215	-0.15469	-6.8566E-05	-2.9105	-0.00129	443.232296880325	13.753	0.10642	13.753	13.708	13.815	0	798	25	0.788241307691771	0.0163681894120964	0.788241307691771	478.495712992362	0	9.93618120074171						187	13	3	NaN	NaN	NaN	0.0041824	1	13186	55.235	49.369	1	53788			3473	1822	2955	3021	3473	3473		
DVFHMVVEVPR	11	Unmodified	_DVFHMVVEVPR_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.232424	1326.67544	-2.5706	-0.0011394	-0.30941	-0.00013714	-2.8801	-0.0012765	443.232298675888	13.762	0.070926	13.762	13.726	13.797	0	834	25	0.763668499782291	0.016395568449004	0.763668499782291	463.578983124383	0	9.95280144657318						112	9	3	NaN	NaN	NaN	0.0019862	1	13187	56.202	35.114	1	20223			3474	1822	2955	3021	3474	3474		
DVFHMVVEVPR	11	Unmodified	_DVFHMVVEVPR_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.344997	1326.67544	1.3691	0.00090956	0.74064	0.00049204	2.1097	0.0014016	664.345985860906	13.753	0.3458	13.753	13.664	14.01	0	489	58	0.997481546940468	0.0383150231076109	0.997481546940468	403.678727763711	0	15.5060109430182						1353	40	6	NaN	NaN	NaN	9.5662E-06	1	13189	108.93	95.655	1	1369700			3475	1822	2955	3021	3475	3475		
DVFNQLLIHAALNCTSSVHK	20	Unmodified	_DVFNQLLIHAALNCTSSVHK_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.391555	2266.15284	0.43864	0.00033178	0.64875	0.00049071	1.0874	0.00082249	756.72578151019	15.269	0.07093	15.269	15.234	15.304	0	498	22	0.991429299781895	0.0141238631290448	0.991429299781895	599.263316620329	0	8.53708183131664						140	9	4	NaN	NaN	NaN	2.8143E-06	1	35338	80.049	74.213	1	25817			3476	1975	2956	3022	3476	3476		
DVFQELEK	8	Unmodified	_DVFQELEK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.25584	1006.49713	0.22138	0.00011163	0.14372	7.2469E-05	0.36509	0.0001841	504.256156712362	11.296	0.13304	11.296	11.243	11.376	0	660	37	0.882057989648486	0.0243991920216602	0.882057989648486	358.135153932701	0	9.90661440977721						288	16	3	NaN	NaN	NaN	0.017666	1	4423	51.43	41.351	1	87404			3477	1903	2957	3023	3477	3477		
DVFSGSDTDPDMAFCK	16	Unmodified	_DVFSGSDTDPDMAFCK_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.363652	1790.71275	2.0047	0.001797	1.0215	0.00091568	3.0263	0.0027126	896.364846185019	12.52	0.11529	12.52	12.485	12.6	0	327	28	1.10599442759226	0.01801947676188	1.10599442759226	446.395947903934	0	7.2729312274779						256	14	4	NaN	NaN	NaN	1.5232E-05	1	26982	54.199	52.215	1	61847			3478	268	2958	3024	3478	3478		
DVGAQILLHSHK	12	Unmodified	_DVGAQILLHSHK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.913971	1316.72008	-1.8882	-0.00083066	-0.56053	-0.00024658	-2.4488	-0.0010772	439.913646207816	6.5693	0.16849	6.5693	6.5338	6.7023	0	855	28	0.749315378969369	0.018464305033006	0.749315378969369	454.901431445119	0	11.2094840515707						314	20	4	NaN	NaN	NaN	0.00028974	1	12887	74.849	66.375	1	122880			3479	2577	2959	3025	3479	3479		
DVGAQILLHSHK	12	Unmodified	_DVGAQILLHSHK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.367318	1316.72008	1.6647	0.0010977	-0.78802	-0.00051959	0.8767	0.00057807	659.366592042999	6.5781	0.11529	6.5781	6.5338	6.6491	0	438	28	1.03173026378327	0.0181116473716121	1.03173026378327	417.571660530807	0	7.33031775202556						212	14	3	NaN	NaN	NaN	0.00070832	1	12889	67.548	56.192	1	58588			3480	2577	2959	3025	3480	3480		
DVGGEGVQQGLLK	13	Unmodified	_DVGGEGVQQGLLK_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.348791	1298.68303	1.3081	0.00085074	-0.16248	-0.00010567	1.1457	0.00074508	650.348498017153	8.4406	0.13303	8.4406	8.3785	8.5116	0	546	31	0.959108205975751	0.0202202547375568	0.959108205975751	388.235350704233	0	8.18491348572906						188	16	2	NaN	NaN	NaN	0.0017156	1	12322	77.358	62.596	1	54593			3481	379	2960	3026	3481	3481		
DVHEDSLTVVFENNWQPER	19	Unmodified	_DVHEDSLTVVFENNWQPER_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.029339	2313.06619	0.72624	0.00056068	-2.6201	-0.0020228	-1.8939	-0.0014621	772.361746146741	17.504	0.15076	17.504	17.45	17.601	0	576	55	0.938871150116794	0.0364569900651212	0.938871150116794	567.424786651589	0	22.033481172669						830	18	6	NaN	NaN	NaN	0.046227	1	35744	12.17	3.8027	1	354890			3482	1178	2961	3027	3482	3482		
DVHNIYGLYVHMATADGLR	19	Unmodified	_DVHNIYGLYVHMATADGLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	537.019103	2144.04731	-1.8711	-0.0010048	0.7498	0.00040266	-1.1213	-0.00060213	537.270075350848	14.87	0.14187	14.87	14.826	14.967	0	753	28	0.81889964927511	0.0183770979161022	0.81889964927511	660.198597780739	0	14.8156545020257						352	17	5	NaN	NaN	NaN	1.4809E-07	1	33935	61.503	57.197	1	101420			3483	1771	2962	3028	3483	3483		
DVHNIYGLYVHMATADGLR	19	Unmodified	_DVHNIYGLYVHMATADGLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	537.019103	2144.04731	-0.86221	-0.00046302	-0.032052	-1.7213E-05	-0.89426	-0.00048024	537.270071259088	14.861	0.088656	14.861	14.817	14.905	0	663	28	0.880024865079826	0.0183006625091034	0.880024865079826	709.477877266174	0	14.7540321924263						277	11	5	NaN	NaN	NaN	0.021045	1	33936	36.96	33.519	1	97115			3484	1771	2962	3028	3484	3484		
DVHNIYGLYVHMATADGLR	19	Unmodified	_DVHNIYGLYVHMATADGLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.689712	2144.04731	0.22716	0.00016258	0.63186	0.00045221	0.85902	0.00061479	716.024454816503	14.861	0.070939	14.861	14.817	14.888	0	510	43	0.983355730988811	0.0282574968538493	0.983355730988811	594.589370191946	0	17.0859910895484						328	9	6	NaN	NaN	NaN	6.2483E-20	1	33937	182.1	165.99	1	218410			3485	1771	2962	3028	3485	3485		
DVHNIYGLYVHMATADGLR	19	Unmodified	_DVHNIYGLYVHMATADGLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.03093	2144.04731	0.1921	0.00020613	0.81711	0.00087679	1.0092	0.0010829	1073.5345328707	14.861	0.070923	14.861	14.826	14.897	0	108	43	1.25141139212444	0.0277373098175624	1.25141139212444	504.448279243307	0	11.181005939665						303	9	5	NaN	NaN	NaN	0.002339	1	33938	38.668	37.489	1	59906			3486	1771	2962	3028	3486	3486		
DVHTLLDR	8	Unmodified	_DVHTLLDR_			0	0	0	Q9NPD3	Q9NPD3	Q9NPD3	EXOSC4	Exosome complex component RRP41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.761623	967.508694	0.30999	0.00015027	0.72758	0.0003527	1.0376	0.00050297	484.76185487052	6.5693	0.2128	6.5693	6.5072	6.72	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	346.756083324578	0	7.44690978020884						322	25	3	NaN	NaN	NaN	0.0083768	1	3581	79.809	69.73	1	106330			3487	2985	2963	3029	3487	3487		
DVIAQSQSGTGK	12	Unmodified	_DVIAQSQSGTGK_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.804217	1189.59388	2.0372	0.0012138	-1.8823	-0.0011215	0.15491	9.2295E-05	595.802974056724	3.0134	0.19507	3.0134	2.9779	3.173	0	630	40	0.902373728295776	0.0263976438859336	0.902373728295776	365.622267246218	0	10.6957528847402						402	23	3	NaN	NaN	NaN	3.2216E-05	1	9147	83.438	48.506	1	130670			3488	1008	2964	3030	3488	3488		
DVIDEPIIEEPSR	13	Unmodified	_DVIDEPIIEEPSR_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.383028	1510.7515	1.2217	0.00092405	-0.25961	-0.00019636	0.96206	0.00072768	756.884043271993	11.598	0.21286	11.598	11.5	11.713	0	420	64	1.04379886199097	0.0422546944183948	1.04379886199097	421.892250575723	0	17.0788920880432						348	25	3	NaN	NaN	NaN	0.0068631	1	18832	54.27	50.662	1	87311			3489	246	2965	3031	3489	3489		
DVIEEHGPSEK	11	Unmodified	_DVIEEHGPSEK_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.296224	1238.5779	2.1324	0.0013227	-1.2585	-0.00078063	0.8739	0.00054208	620.295384161902	3.306	0.23053	3.306	3.2262	3.4567	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	370.387616359477	0	6.57217753549236						324	27	3	NaN	NaN	NaN	0.00091675	1	10566	70.389	49.114	1	72294			3490	1178	2966	3032	3490	3490		
DVIEEYFK	8	Unmodified	_DVIEEYFK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.758215	1041.50188	1.453	0.00075809	-0.9859	-0.0005144	0.46706	0.00024369	521.757639964547	12.804	0.21286	12.804	12.733	12.946	0	630	55	0.902373728295776	0.0365531253994683	0.902373728295776	366.217682252029	0	14.8346526977715						842	25	5	NaN	NaN	NaN	0.01001	1	5255	60.589	45.091	1	1093400			3491	837	2967	3033	3491	3491		
DVIGFNMAGLDYLK	14	Unmodified	_DVIGFNMAGLDYLK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.394884	1554.77522	1.0796	0.00084038	0.5722	0.0004454	1.6518	0.0012858	778.395542438601	18.479	0.1242	18.479	18.444	18.568	0	393	52	1.0618830335572	0.0341495757377568	1.0618830335572	429.091325415333	0	13.7993415965959						399	15	4	NaN	NaN	NaN	0.00030517	1	20200	43.613	34.351	1	97561			3492	3308	2968	3034	3492	3492		
DVIGIAHHPHQNLIATYSEDGLLK	24	Unmodified	_DVIGIAHHPHQNLIATYSEDGLLK_			0	0	0	Q2TAY7	Q2TAY7	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	661.098776	2640.366	-1.3059	-0.00086334	0.54636	0.0003612	-0.75956	-0.00050214	661.34980188171	12.103	0.07095	12.103	12.068	12.139	0	714	22	0.845418525735192	0.0142674906232585	0.845418525735192	680.754278012749	0	11.4885763472519						152	9	4	NaN	NaN	NaN	0.00026444	1	37396	49.155	47.207	1	31290			3493	1926	2969	3035	3493	3493		
DVIIADCGK	9	Unmodified	_DVIIADCGK_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.749867	989.485181	0.0089291	4.4266E-06	0.447	0.0002216	0.45593	0.00022603	495.749940591247	5.7179	0.26601	5.7179	5.6559	5.9219	0	753	43	0.81889964927511	0.0285806380781382	0.81889964927511	332.568543227781	0	11.6070646489844						478	31	2	NaN	NaN	NaN	0.028657	1	4036	36.211	23.383	1	150760			3494	816	2970	3036	3494	3494		
DVISNTSDVIGTCEAADVAQK	21	Unmodified	_DVISNTSDVIGTCEAADVAQK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1097.02062	2192.02669	0.39869	0.00043737	0.96407	0.0010576	1.3628	0.001495	1097.52337219227	12.015	0.088682	12.015	11.979	12.068	0	114	49	1.24744674793813	0.0317345551561103	1.24744674793813	502.779266921182	0	12.7905070126891						346	11	4	NaN	NaN	NaN	5.7681E-16	1	34588	159.75	154.13	1	70081			3495	2866	2971	3037	3495	3495		
DVLDGHLR	8	Unmodified	_DVLDGHLR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.748516	923.482479	-0.49723	-0.00023009	0.69385	0.00032108	0.19662	9.0985E-05	462.748735703223	5.8953	0.18626	5.8953	5.8421	6.0283	0	726	43	0.837263974740672	0.028552837009126	0.837263974740672	340.359583892956	0	11.6071299095361						345	22	3	NaN	NaN	NaN	0.0063117	1	2766	69.093	41.389	1	121540			3496	718	2972	3038	3496	3496		
DVLDVYIEHR	10	Unmodified	_DVLDVYIEHR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	420.21906	1257.63535	-1.4797	-0.00062181	-0.36735	-0.00015437	-1.8471	-0.00077618	420.218826807648	10.853	0.1064	10.853	10.791	10.897	0	819	19	0.773912161060781	0.012288113713894	0.773912161060781	470.062668942707	0	7.46361644027832						122	13	3	NaN	NaN	NaN	0.054303	1	11139	12.596	10.437	1	23184			3497	952	2973	3039	3497	3497		
DVLETFTVK	9	Unmodified	_DVLETFTVK_			0	0	0	P21926	P21926	P21926	CD9	CD9 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.28714	1050.55973	-0.36593	-0.00019259	-0.70805	-0.00037264	-1.074	-0.00056522	526.286955811152	12.201	0.1685	12.201	12.148	12.316	0	681	40	0.867820189810857	0.0264599929662752	0.867820189810857	352.154917219218	0	10.7372664776221						273	20	3	NaN	NaN	NaN	0.012265	1	5488	33.426	19.778	1	79602			3498	796	2974	3040	3498	3498		
DVLEVGELAK	10	Unmodified	_DVLEVGELAK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.797872	1071.58119	0.71731	0.00038505	0.34556	0.0001855	1.0629	0.00057055	536.798364656891	11.332	0.14193	11.332	11.261	11.403	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	366.907089547246	0	8.23502565850225						270	17	3	NaN	NaN	NaN	0.054778	1	5998	29.755	17.688	1	66892			3499	2836	2975	3041	3499	3499		
DVLEYVVFEK	10	Unmodified	_DVLEYVVFEK_			0	0	0	Q9BRJ2	Q9BRJ2	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.826629	1239.63871	0.063925	3.9686E-05	-1.6159	-0.0010032	-1.552	-0.0009635	620.825414413944	15.677	0.15073	15.677	15.624	15.775	0	606	46	0.918606045818476	0.030408192841195	0.918606045818476	372.026925005062	0	12.3150359494871						412	18	4	NaN	NaN	NaN	0.00072527	1	10611	67.881	57.179	1	128070			3500	2707	2976	3042	3500	3500		
DVLGMAQDEMAQAFEDWNK	19	Unmodified	_DVLGMAQDEMAQAFEDWNK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.322478	2196.9456	-0.057409	-4.2099E-05	-2.0316	-0.0014898	-2.089	-0.0015319	733.654773958939	20.093	0.017725	20.093	20.084	20.102	0	543	31	0.961130371139249	0.0202230534711471	0.961130371139249	581.060748103519	0	12.2260443866254						93	3	5	NaN	NaN	NaN	0.066402	1	34643	18.396	18.316	1	33494			3501	1205	2977	3043	3501	3501		
DVLGMAQDEMAQAFEDWNK	19	Unmodified	_DVLGMAQDEMAQAFEDWNK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1099.48008	2196.9456	0.78453	0.00086257	0.9697	0.0010662	1.7542	0.0019287	1099.98266366547	20.093	0.035451	20.093	20.084	20.119	0	141	49	1.2295923935727	0.0317693826712584	1.2295923935727	495.576140714506	0	12.804363575606						186	5	5	NaN	NaN	NaN	3.3073E-05	1	34644	48.476	46.744	1	90495			3502	1205	2977	3043	3502	3502		
DVLIEFYAPWCGHCK	15	Unmodified	_DVLIEFYAPWCGHCK_			0	0	0	P30101;P13667	P30101;P13667	P13667	PDIA3;PDIA4	Protein disulfide-isomerase A3;Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.292013	1893.85421	0.36283	0.00022942	-1.6171	-0.0010225	-1.2543	-0.00079307	632.625483410264	16.165	0.15077	16.165	16.094	16.245	0	609	37	0.916577990479294	0.0243417287857135	0.916577990479294	554.682523007878	0	14.7308048823785						440	18	4	NaN	NaN	NaN	0.00039389	1	29456	75.474	73.173	1	133390			3503	680;904	2978	3044	3503	3503		
DVLIEFYAPWCGHCK	15	Unmodified	_DVLIEFYAPWCGHCK_			0	0	0	P30101;P13667	P30101;P13667	P13667	PDIA3;PDIA4	Protein disulfide-isomerase A3;Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.934382	1893.85421	1.689	0.001601	0.40117	0.00038028	2.0901	0.0019813	948.4364832762	16.174	0.12415	16.174	16.103	16.227	0	180	67	1.203763835057	0.0437608989568621	1.203763835057	485.65376844741	0	17.6551619762193						826	15	4	NaN	NaN	NaN	2.8639E-06	1	29457	84.309	79.755	1	188490			3504	680;904	2978	3044	3504	3504		
DVLILGGGDGGILCEIVK	18	Unmodified	_DVLILGGGDGGILCEIVK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.497869	1826.98119	1.5564	0.0014233	1.1309	0.0010342	2.6873	0.0024575	915.000753835851	19.454	0.15077	19.454	19.366	19.516	0	267	61	1.14597988355104	0.039924995069111	1.14597988355104	462.464113966104	0	16.1118687463551						496	18	5	NaN	NaN	NaN	4.324E-14	1	27905	110.9	105.52	1	172830			3505	1222	2979	3045	3505	3505		
DVLLDVAYAYGK	12	Unmodified	_DVLLDVAYAYGK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.850635	1325.68672	0.89422	0.00059363	1.0209	0.00067774	1.9151	0.0012714	663.851537180353	15.313	0.10642	15.313	15.278	15.384	0	423	25	1.04178812298108	0.0160892438574902	1.04178812298108	421.612748028254	0	6.51133389488297						202	13	3	NaN	NaN	NaN	0.0042784	1	13158	61.48	52.503	1	52659			3506	2466	2980	3046	3506	3506		
DVLLPWYNAYR	11	Unmodified	_DVLLPWYNAYR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.364244	1408.71394	0.39593	0.00027927	-0.061758	-4.3562E-05	0.33417	0.00023571	705.363992325229	16.847	0.15964	16.847	16.777	16.936	0	459	73	1.01763759082241	0.0483812177917015	1.01763759082241	411.588508940788	0	19.5680205519267						843	19	4	NaN	NaN	NaN	0.0035687	1	15722	28.096	21.833	1	305150			3507	1036	2981	3047	3507	3507		
DVLLQVDDERR	11	Unmodified	_DVLLQVDDERR_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.240524	1356.69974	-1.182	-0.00053573	-2.6539	-0.0012028	-3.8359	-0.0017386	453.2386958088	7.5092	0.14184	7.5092	7.4294	7.5713	0	828	34	0.767766820543916	0.0225423377004501	0.767766820543916	465.960666066378	0	13.6810323245717						265	17	3	NaN	NaN	NaN	0.0021197	1	14094	72.042	59.975	1	86094			3508	972	2982	3048	3508	3508		
DVLLQVDDERR	11	Unmodified	_DVLLQVDDERR_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.357148	1356.69974	1.829	0.0012426	1.0968	0.00074509	2.9258	0.0019876	679.358128438812	7.5092	0.22167	7.5092	7.456	7.6777	0	474	64	1.00756305028564	0.0423423350766804	1.00756305028564	407.665654560268	0	17.1319459757397						722	26	4	NaN	NaN	NaN	3.2421E-16	1	14099	167.76	108.11	1	354270			3509	972	2982	3048	3509	3509		
DVLQAETSQQLCCQK	15	Unmodified	_DVLQAETSQQLCCQK_			0	0	0	Q9UNH7	Q9UNH7	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.419293	1806.82403	2.5088	0.002269	-0.56869	-0.00051433	1.9401	0.0017547	904.920321698305	7.9793	0.10642	7.9793	7.935	8.0414	-8.8818E-16	309	94	1.11800162319566	0.0619561804566018	1.11800162319566	451.21131751261	0	25.0047309698582						539	13	4	NaN	NaN	NaN	6.062E-05	1	27390	71.219	63.643	1	102720			3510	3296	2983	3049	3510	3510		
DVLSVAFSSDNR	12	Unmodified	_DVLSVAFSSDNR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.322773	1308.63099	1.0783	0.00070667	0.54374	0.00035632	1.6221	0.001063	655.322959448338	12.538	0.19507	12.538	12.485	12.68	0	480	106	1.00353128488872	0.070638945157859	1.00353128488872	406.184766905264	0	28.5914987459114						1242	23	4	NaN	NaN	NaN	3.1625E-07	1	12614	126.29	119.6	1	384610			3511	1435	2984	3050	3511	3511		
DVLSYHIPFLVSSIEDFK	18	Unmodified	_DVLSYHIPFLVSSIEDFK_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.701612	2108.08301	0.70487	0.00049601	-1.2055	-0.00084832	-0.50065	-0.00035231	704.035597242355	19.827	0.070941	19.827	19.782	19.853	0	531	16	0.969216233931596	0.0101052309650996	0.969216233931596	586.104169771196	0	6.11083244150848						92	9	3	NaN	NaN	NaN	0.037758	1	33446	32.61	31.022	1	16062			3512	3340	2985	3051	3512	3512		
DVLTGQEFDVR	11	Unmodified	_DVLTGQEFDVR_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.819867	1277.62518	1.6047	0.0010267	2.4832	0.0015888	4.0878	0.0026155	639.821426591843	11.048	0.15961	11.048	10.986	11.146	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.849030000482	0	8.99687122730876						390	19	4	NaN	NaN	NaN	0.00046792	1	11691	78.932	66.974	1	103960			3513	1064	2986	3052	3513	3513		
DVMDALILK	9	Unmodified	_DVMDALILK_			0	0	0	Q8N1G4	Q8N1G4	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.286085	1016.55762	-0.87928	-0.00044781	-1.4026	-0.00071434	-2.2819	-0.0011621	509.285581641815	15.251	0.11525	15.251	15.225	15.34	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	350.654779388283	0	6.61086528205783						153	14	3	NaN	NaN	NaN	0.042914	1	4669	25.254	16.491	1	28002			3514	2241	2987	3053	3514	3514		
DVMEGVTVDDHMMK	14	Unmodified	_DVMEGVTVDDHMMK_			0	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.849126	1605.6837	2.6927	0.0021645	0.21663	0.00017414	2.9093	0.0023387	803.84985097477	9.7622	0.062084	9.7622	9.7356	9.7977	0	318	31	1.11199926528787	0.0200119941897818	1.11199926528787	449.216787303167	0	8.08428927795768						175	8	4	NaN	NaN	NaN	1.0785E-07	1	21764	95.138	90.61	1	51739			3515	1960	2988	3054	3515	3515		
DVMQNHLLQMLCLVAMEK	18	Unmodified	_DVMQNHLLQMLCLVAMEK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.026062	2172.05636	0.13308	9.649E-05	-0.68994	-0.00050022	-0.55686	-0.00040374	725.360212687565	19.951	0.053212	19.951	19.942	19.995	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	574.987811593583	0	12.2336957835429						184	7	5	NaN	NaN	NaN	2.7531E-07	1	34338	97.268	94.194	1	116930			3516	653	2989	3055	3516	3516		
DVMQQQLAEYQELLDVK	17	Unmodified	_DVMQQQLAEYQELLDVK_			0	0	0	Q03252	Q03252	Q03252	LMNB2	Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.010229	2049.00886	-0.14175	-9.6961E-05	-0.60536	-0.00041407	-0.74711	-0.00051103	684.344105311797	18.55	0.12414	18.55	18.532	18.656	0	603	28	0.920633820089869	0.0182474411105494	0.920633820089869	556.830357598189	0	11.036667279774						213	15	4	NaN	NaN	NaN	0.03633	1	32529	31.722	28.828	1	40062			3517	1537	2990	3056	3517	3517		
DVNAAIAAIK	10	Unmodified	_DVNAAIAAIK_			0	0	0	P68366	P68366	P68366	TUBA4A	Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.287474	984.560395	0.37531	0.00018513	-2.1533	-0.0010622	-1.7779	-0.00087704	493.286345310153	9.8776	0.17732	9.8776	9.7889	9.9662	0	681	37	0.867820189810857	0.0244195217531761	0.867820189810857	352.460157016245	0	9.91784769753042						261	21	3	NaN	NaN	NaN	0.027956	1	3942	48.157	35.605	1	63796			3518	1448	2991	3057	3518	3518		
DVNFEFPEFQL	11	Unmodified	_DVNFEFPEFQL_			0	0	0	P62081	P62081	P62081	RPS7	40S ribosomal protein S7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.824618	1383.63468	0.48779	0.00033795	-0.93241	-0.000646	-0.44462	-0.00030804	692.824397718556	20.164	0.062091	20.164	20.155	20.217	0	534	64	0.967195187796614	0.0424654908030729	0.967195187796614	391.255757673109	0	17.1784020317216						322	8	4	NaN	NaN	NaN	2.0356E-07	1	14934	155.57	133.53	1	312740			3519	1364	2992	3058	3519	3519		
DVNQQEFVR	9	Unmodified	_DVNQQEFVR_			0	0	0	P39019	P39019	P39019	RPS19	40S ribosomal protein S19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.780544	1133.54654	1.6732	0.00095004	0.26135	0.00014839	1.9346	0.0010984	567.780835963209	5.78	0.3991	5.78	5.6913	6.0904	0	654	64	0.886123392477847	0.0426719476596595	0.886123392477847	359.241431607918	0	17.2995450711312						1158	46	5	NaN	NaN	NaN	7.2652E-06	1	7627	146.03	126.54	1	1369800			3520	1009	2993	3059	3520	3520		
DVNVNFEK	8	Unmodified	_DVNVNFEK_			0	0	0	Q15185	Q15185	Q15185	PTGES3	Prostaglandin E synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.740357	963.46616	-0.11995	-5.7903E-05	0.5558	0.00026831	0.43586	0.00021041	482.741114674747	6.5515	0.26601	6.5515	6.4717	6.7377	0	744	61	0.82502364452135	0.0408124648651854	0.82502364452135	335.179627337013	0	16.5807451156798						838	31	5	NaN	NaN	NaN	0.016869	1	3503	58.426	44.778	1	526430			3521	1823	2994	3060	3521	3521		
DVPFGFQTVTSDVNK	15	Unmodified	_DVPFGFQTVTSDVNK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.409577	1652.8046	2.4613	0.0020365	0.14498	0.00011996	2.6063	0.0021565	827.40962872845	14.125	0.27488	14.125	14.028	14.302	3.5527E-15	351	70	1.08996939197032	0.0461069279389572	1.08996939197032	440.209954342147	0	18.6213748683116						964	32	5	NaN	NaN	NaN	0.00013055	1	23134	67.887	52.008	1	349490			3522	994	2995	3061	3522	3522		
DVPIGAIICITVGKPEDIEAFK	22	Unmodified	_DVPIGAIICITVGKPEDIEAFK_			0	0	1	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	795.762654	2384.26613	-0.21953	-0.0001747	0.039919	3.1766E-05	-0.17962	-0.00014293	796.097180605865	19.091	0.11527	19.091	19.038	19.153	0	561	34	0.948993180460448	0.0222653859126632	0.948993180460448	573.440000124294	0	13.4541144904014						334	14	5	NaN	NaN	NaN	0.024814	1	36270	31.138	30.492	1	86777			3523	626	2996	3062	3523	3523		
DVPLTAEEVEFVVEK	15	Unmodified	_DVPLTAEEVEFVVEK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.440543	1702.86653	1.1068	0.00094352	0.32907	0.00028051	1.4359	0.001224	852.942666807998	16.307	0.12413	16.307	16.28	16.404	0	330	49	1.10399226369747	0.0320412505786125	1.10399226369747	445.764435967509	0	12.937454782548						304	15	3	NaN	NaN	NaN	0.0014985	1	24586	47.57	44.282	1	50991			3524	3067	2997	3063	3524	3524		
DVPNETLQVEEDDRPELPWWK	21	Unmodified	_DVPNETLQVEEDDRPELPWWK_			0	0	1	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.750242	2594.2289	1.4241	0.0012329	0.019286	1.6697E-05	1.4434	0.0012496	866.084630644556	15.792	0.14189	15.792	15.739	15.881	0	510	127	0.983355730988811	0.0847843724623036	0.983355730988811	593.925333439016	0	51.2079048285572						1446	17	5	NaN	NaN	NaN	0.0010448	1	37220	54.813	53.938	1	370660			3525	429	2998	3064	3525	3525		
DVPNPNQDDDDDEGFSFNPLK	21	Unmodified	_DVPNPNQDDDDDEGFSFNPLK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1189.50639	2376.99823	0.2554	0.0003038	1.5059	0.0017913	1.7613	0.0020951	1190.00918102495	14.843	0.088672	14.843	14.781	14.87	0	93	67	1.26131825079847	0.0435812452471609	1.26131825079847	508.120912814965	0	17.5566651022307						515	11	4	NaN	NaN	NaN	0.00069241	1	36241	40.53	40.197	1	98209			3526	1583	2999	3065	3526	3526		
DVPPLSETEATPVPIK	16	Unmodified	_DVPPLSETEATPVPIK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.95636	1691.89817	1.7503	0.0014824	0.29526	0.00025007	2.0456	0.0017325	847.458075397426	12.29	0.1951	12.29	12.148	12.343	0	303	46	1.12200181823275	0.0300117972178613	1.12200181823275	453.059953561704	0	12.1186465412723						466	23	3	NaN	NaN	NaN	0.070272	1	24262	22.395	19.106	1	98941			3527	869	3000	3066	3527	3527		
DVPVAEEVSALFAGELNPVAPK	22	Unmodified	_DVPVAEEVSALFAGELNPVAPK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.59408	2251.17361	0.41794	0.00047085	-0.76482	-0.00086165	-0.34688	-0.00039079	1127.09541808619	20.128	0.053219	20.128	20.093	20.146	0	84	46	1.26725910986255	0.0296921015055513	1.26725910986255	510.680056537675	0	11.9653226065363						147	7	4	NaN	NaN	NaN	0.0012059	1	35195	43.177	42.234	1	41071			3528	108	3001	3067	3528	3528		
DVPVVAILGSGGGFR	15	Unmodified	_DVPVVAILGSGGGFR_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.401358	1442.78816	1.2423	0.00089746	1.3321	0.00096232	2.5744	0.0018598	722.402356758462	17.335	0.40787	17.335	17.114	17.521	0	366	55	1.07994477139643	0.0360961081802142	1.07994477139643	436.688649648903	0	14.595895231213						1484	47	5	NaN	NaN	NaN	3.9177E-08	1	16759	138.71	128.01	1	947320			3529	1098	3002	3068	3529	3529		
DVPWGVDSLITLAFQDQR	18	Unmodified	_DVPWGVDSLITLAFQDQR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.526	2059.03745	0.82661	0.00085185	0.5841	0.00060193	1.4107	0.0014538	1031.0276491595	20.155	0.017723	20.155	20.146	20.164	0	147	43	1.22562176648663	0.0278058342330012	1.22562176648663	494.183659628306	0	11.2116064645891						80	3	4	NaN	NaN	NaN	0.045488	1	32689	24.922	22.027	1	19110			3530	1898	3003	3069	3530	3530		
DVQDSLTVSNEAQTAK	16	Unmodified	_DVQDSLTVSNEAQTAK_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.415588	1704.81662	2.7826	0.0023747	-2.3015	-0.0019642	0.48108	0.00041056	853.915134518999	7.1457	0.26602	7.1457	7.0747	7.3408	0	360	121	1.08395544855938	0.080092222518328	1.08395544855938	437.670039110307	0	32.3389362622016						1558	31	5	NaN	NaN	NaN	2.6141E-17	1	24621	179.21	168.96	1	562730			3531	1226	3004	3070	3531	3531		
DVQEIATVVVPK	12	Unmodified	_DVQEIATVVVPK_			0	0	0	Q9BRT6	Q9BRT6	Q9BRT6	LLPH	Protein LLP homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.371735	1296.72892	1.3829	0.000898	0.75209	0.00048839	2.135	0.0013864	649.372299200413	12.68	0.16849	12.68	12.6	12.768	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	411.933864250749	0	8.96937833024771						242	20	3	NaN	NaN	NaN	0.00021574	1	12266	83.775	75.301	1	58275			3532	2715	3005	3071	3532	3532		
DVQEIFR	7	Unmodified	_DVQEIFR_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.737617	905.460681	-1.5877	-0.00072038	-3.6756	-0.0016677	-5.2632	-0.0023881	453.736015318198	9.1858	0.11526	9.1858	9.1504	9.2656	0	798	43	0.788241307691771	0.0286323764713153	0.788241307691771	320.524665189972	0	11.6428596072133						241	14	2	NaN	NaN	NaN	0.025625	1	2420	42.229	20.301	1	62483			3533	1705;51	3006	3072	3533	3533		
DVQELLTQYTK	11	Unmodified	_DVQELLTQYTK_			0	0	0	P61011	P61011	P61011	SRP54	Signal recognition particle 54 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.351	1336.68745	0.63214	0.00042312	-5.8339	-0.003905	-5.2018	-0.0034818	669.346767979459	14.134	0.14188	14.134	14.09	14.232	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.381834954981	0	11.4348685345486						282	17	3	NaN	NaN	NaN	0.0078704	1	13496	62.271	41.183	1	56767			3534	1321	3007	3073	3534	3534		
DVQETLMPQVLTTLEEDSK	19	Unmodified	_DVQETLMPQVLTTLEEDSK_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.53812	2175.06168	-0.37259	-0.00040558	2.0501	0.0022316	1.6775	0.001826	1089.04231932612	19.206	0.079795	19.206	19.162	19.242	0	102	34	1.25537494996371	0.0217980777647078	1.25537494996371	505.999551944017	0	8.78607429796318						217	10	4	NaN	NaN	NaN	4.7033E-05	1	34380	65.421	58.11	1	37104			3535	2192	3008	3074	3535	3535		
DVQGTDASLDEELDR	15	Unmodified	_DVQGTDASLDEELDR_			0	0	0	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.876295	1661.73804	2.06	0.0017136	1.8808	0.0015646	3.9408	0.0032782	831.87761316489	9.4253	0.15072	9.4253	9.3189	9.4696	0	366	52	1.07994477139643	0.0341025169247675	1.07994477139643	436.141774501495	0	13.7724934093649						239	18	2	NaN	NaN	NaN	4.5523E-06	1	23384	89.359	83.972	1	107000			3536	3256	3009	3075	3536	3536		
DVQGTDASLDEELDRVK	17	Unmodified	_DVQGTDASLDEELDRVK_			0	0	1	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.641081	1888.90141	0.83416	0.00052606	1.3092	0.00082561	2.1433	0.0013517	630.642155232466	10.498	0.088716	10.498	10.463	10.551	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	549.782035637323	0	11.052142796466						256	11	5	NaN	NaN	NaN	4.4532E-07	1	29345	88.42	83.032	1	97555			3537	3256	3010	3076	3537	3537		
DVQIGDIVTVGECRPLSK	18	Unmodified	_DVQIGDIVTVGECRPLSK_			0	0	1	P62280	P62280	P62280	RPS11	40S ribosomal protein S11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.682335	1985.02518	0.71118	0.00047129	-1.1465	-0.00075977	-0.43533	-0.00028848	663.016079498186	13.15	0.23055	13.15	13.105	13.336	0	591	55	0.928742107665821	0.0364771975402507	0.928742107665821	561.856253181883	0	22.0674193270401						949	27	6	NaN	NaN	NaN	6.3215E-05	1	31370	101.43	81.138	1	478010			3538	1380	3011	3077	3538	3538		
DVQIGDIVTVGECRPLSK	18	Unmodified	_DVQIGDIVTVGECRPLSK_			0	0	1	P62280	P62280	P62280	RPS11	40S ribosomal protein S11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.519864	1985.02518	1.1379	0.0011305	-0.44705	-0.00044415	0.69083	0.00068635	994.021114149592	13.159	0.20396	13.159	13.105	13.309	0	63	91	1.28111162701928	0.0594045845370281	1.28111162701928	516.686748863712	0	23.9585380420365						1745	24	5	NaN	NaN	NaN	6.2874E-13	1	31371	153.08	128.16	1	780810			3539	1380	3011	3077	3539	3539		
DVQTALALAK	10	Unmodified	_DVQTALALAK_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.300581	1028.58661	1.0962	0.00056487	-1.8289	-0.00094242	-0.73269	-0.00037756	515.299426484108	9.8509	0.19505	9.8509	9.8066	10.002	0	636	64	0.898312834727904	0.0426837906416542	0.898312834727904	364.629336651071	0	17.3255481450777						515	23	3	NaN	NaN	NaN	0.012437	1	4964	44.82	21.245	1	169120			3540	2667	3012	3078	3540	3540		
DVSDQIGNEEQVEDTFQK	18	Unmodified	_DVSDQIGNEEQVEDTFQK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.96891	2079.92327	1.9321	0.0020113	-0.75757	-0.00078861	1.1746	0.0012227	1041.46976991929	11.012	0.06207	11.012	10.995	11.057	0	234	34	1.16792504164217	0.0219240556368867	1.16792504164217	470.888058222666	0	8.83941658850239						144	8	3	NaN	NaN	NaN	7.5734E-07	1	33018	102.26	100.64	1	26589			3541	3048	3013	3079	3541	3541		
DVSELTGFPEMLGGR	15	Unmodified	_DVSELTGFPEMLGGR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.39033	1606.76611	0.81913	0.0006589	-1.1136	-0.00089575	-0.29444	-0.00023685	804.389465048294	17.007	0.19506	17.007	16.954	17.149	0	429	73	1.03776581230406	0.0482344672999115	1.03776581230406	419.226125590454	0	19.4852717311684						944	23	3	NaN	NaN	NaN	2.7651E-24	1	21810	171.09	143.5	1	514050			3542	929	3014	3080	3542	3542		
DVSGPMPDSYSPR	13	Unmodified	_DVSGPMPDSYSPR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.314091	1406.61363	1.9106	0.0013457	2.2235	0.0015661	4.1341	0.0029117	704.315717388663	7.4649	0.18617	7.4649	7.3851	7.5713	0	483	61	1.00151498427745	0.0403399678906649	1.00151498427745	405.073512529634	0	16.315934105163						832	22	4	NaN	NaN	NaN	0.00090275	1	15661	90.306	81.329	1	290420			3543	858	3015	3081	3543	3543		
DVSHEIIQHEVK	12	Unmodified	_DVSHEIIQHEVK_			0	0	0	Q7Z6E9	Q7Z6E9	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.584291	1432.73104	-0.59526	-0.00028488	-0.39864	-0.00019078	-0.9939	-0.00047567	478.583996290829	5.6292	0.070995	5.6292	5.6026	5.6736	0	843	19	0.757518876820989	0.0123018175382856	0.757518876820989	459.495344524997	0	7.4620290807274						119	9	3	NaN	NaN	NaN	0.0018064	1	16477	62.705	53.443	1	28431			3544	2147	3016	3082	3544	3544		
DVSLGDWEFGK	11	Unmodified	_DVSLGDWEFGK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.79586	1251.57717	0.29663	0.00018593	0.80298	0.0005033	1.0996	0.00068923	626.796235171195	15.03	0.079813	15.03	14.994	15.074	-1.7764E-15	585	28	0.932794566565362	0.0182348035691394	0.932794566565362	377.733443184222	0	7.3841501492883						165	10	3	NaN	NaN	NaN	0.023234	1	10953	57.032	45.672	1	38790			3545	2819	3017	3083	3545	3545		
DVSSVELLMNNHQGIK	16	Unmodified	_DVSSVELLMNNHQGIK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.453993	1782.89343	1.6115	0.0014382	-0.46976	-0.00041924	1.1417	0.0010189	892.453779378347	11.633	0.11529	11.633	11.598	11.713	0	216	40	1.17988115188462	0.0258924572936763	1.17988115188462	476.233792737572	0	10.4509366223598						400	14	5	NaN	NaN	NaN	7.65E-18	1	26759	156.14	145.17	1	115650			3546	1511	3018	3084	3546	3546		
DVTEAEQAEEQAR	13	Unmodified	_DVTEAEQAEEQAR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.334066	1474.65358	2.2976	0.0016964	-1.078	-0.00079596	1.2196	0.00090046	738.333602255449	5.0174	0.18619	5.0174	4.9819	5.1681	0	510	40	0.983355730988811	0.0262445464858834	0.983355730988811	397.55010798494	0	10.6101199806781						419	22	4	NaN	NaN	NaN	1.9845E-05	1	17721	121.96	91.046	1	113830			3547	1594	3019	3085	3547	3547		
DVTFSPATIENELIK	15	Unmodified	_DVTFSPATIENELIK_			0	0	0	P55145	P55145	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.94071	1675.86687	1.0124	0.00084936	-0.73045	-0.0006128	0.28197	0.00023655	838.940422505327	18.045	0.12414	18.045	17.965	18.089	0	366	28	1.07994477139643	0.0180492926905949	1.07994477139643	436.111376228797	0	7.28880039399917						177	15	3	NaN	NaN	NaN	0.0032562	1	23790	42.061	31.089	1	32413			3548	1268	3020	3086	3548	3548		
DVTNNVHYENYR	12	Unmodified	_DVTNNVHYENYR_			0	0	0	Q16181	Q16181	Q16181	SEPT7	Septin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.347311	1522.68007	2.0755	0.0015822	-1.246	-0.00094989	0.82947	0.00063235	762.345978457419	5.2479	0.11532	5.2479	5.2125	5.3278	0	426	43	1.03977710643793	0.0281600678501546	1.03977710643793	420.236813007999	0	11.3811865006132						339	14	4	NaN	NaN	NaN	1.7158E-05	1	19192	86.838	78.464	1	94383			3549	1877	3021	3087	3549	3549		
DVTNNVHYENYR	12	Unmodified	_DVTNNVHYENYR_			0	0	0	Q16181	Q16181	Q16181	SEPT7	Septin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.5673	1522.68007	-0.51899	-0.00026394	3.2286	0.0016419	2.7096	0.001378	508.568884095788	5.2391	0.12416	5.2391	5.1859	5.31	0	723	28	0.839303037468863	0.0183515663260597	0.839303037468863	508.816625149926	0	11.1254000371554						208	15	4	NaN	NaN	NaN	0.0073346	1	19194	40.533	35.382	1	58964			3550	1877	3021	3087	3550	3550		
DVVFNYLHATAFQGTPLAQAVEGPSENVR	29	Unmodified	_DVVFNYLHATAFQGTPLAQAVEGPSENVR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1044.19126	3129.55196	1.5202	0.0015873	0.10494	0.00010958	1.6251	0.0016969	1044.52554873252	18.497	0.14194	18.497	18.417	18.559	0	402	61	1.05585747106793	0.0401565865684175	1.05585747106793	637.133092929854	0	24.2315756651924						1014	17	5	NaN	NaN	NaN	3.868E-22	1	38393	151.52	147.2	1	257540			3551	927	3022	3088	3551	3551		
DVVICPDASLEDAK	14	Unmodified	_DVVICPDASLEDAK_			0	0	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.369063	1530.72357	2.5768	0.0019748	1.5949	0.0012223	4.1717	0.0031971	766.370674184274	10.631	0.39902	10.631	10.489	10.888	0	396	106	1.05987478976334	0.070385681583464	1.05987478976334	428.339212584189	0	28.4457633277552						2029	46	6	NaN	NaN	NaN	7.1306E-05	1	19454	93.162	88.011	1	2148000			3552	2644	3023	3089	3552	3552		
DVVICPDASLEDAKK	15	Unmodified	_DVVICPDASLEDAKK_			0	0	1	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.946789	1658.81854	0.093217	5.1637E-05	-0.13025	-7.2151E-05	-0.037031	-2.0513E-05	554.280747453691	8.5116	0.11529	8.5116	8.4406	8.5559	0	675	28	0.871889544407995	0.0183108263146563	0.871889544407995	528.181290613352	0	11.0925012659015						276	14	4	NaN	NaN	NaN	0.0014274	1	23289	52.863	51.982	1	66810			3553	2644	3024	3090	3553	3553		
DVVNVLQAVGESLAK	15	Unmodified	_DVVNVLQAVGESLAK_			0	0	0	Q8IWJ2	Q8IWJ2	Q8IWJ2	GCC2	GRIP and coiled-coil domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.430313	1540.84607	0.99814	0.00076999	-0.16042	-0.00012375	0.83772	0.00064624	771.430174456205	19.712	0.053204	19.712	19.685	19.738	0	384	25	1.06790610341098	0.0160581986923201	1.06790610341098	431.559593001988	0	6.48939983568545						100	7	3	NaN	NaN	NaN	0.0034521	1	19752	31.801	18.626	1	21374			3554	2204	3025	3091	3554	3554		
DVVNVYEPQLQHHVAQK	17	Unmodified	_DVVNVYEPQLQHHVAQK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.681434	2003.02247	0.83868	0.00056081	0.77988	0.00052149	1.6186	0.0010823	669.016337312873	7.3762	0.16846	7.3762	7.3053	7.4738	0	660	31	0.882057989648486	0.020329837424522	0.882057989648486	533.580738119759	0	12.298068592014						467	20	5	NaN	NaN	NaN	3.9136E-05	1	31692	87.573	77.552	1	149240			3555	1880	3026	3092	3555	3555		
DVVTAAGDMLK	11	Unmodified	_DVVTAAGDMLK_			0	0	0	P07602	P07602	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.289356	1118.56416	0.067068	3.7578E-05	0.55941	0.00031343	0.62648	0.00035101	560.289282668373	12.183	0.18624	12.183	12.086	12.272	0	621	49	0.908462957275599	0.032478149233901	0.908462957275599	368.357337805988	0	13.1690175068262						353	22	4	NaN	NaN	NaN	0.00124	1	7227	59.645	31.909	1	95233			3556	561	3027	3093	3556	3556		
DVVTLLAEGLR	11	Unmodified	_DVVTLLAEGLR_			0	0	0	O14874	O14874	O14874	BCKDK	[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.34552	1184.67649	-0.36134	-0.0002144	-0.17542	-0.00010408	-0.53676	-0.00031848	593.345422791959	18.213	0.070937	18.213	18.186	18.257	0	555	55	0.953040030838688	0.0364418454762743	0.953040030838688	386.169522963834	0	14.7661479351611						217	9	2	NaN	NaN	NaN	0.0078617	1	9009	44.57	33.868	1	48493			3557	122	3028	3094	3557	3557		
DVVVQHVHFDGLGR	14	Unmodified	_DVVVQHVHFDGLGR_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.610951	1576.81102	-1.7126	-0.00090189	0.53921	0.00028395	-1.1734	-0.00061794	526.61129077444	9.4962	0.19507	9.4962	9.4608	9.6558	0	801	34	0.78619514174348	0.0225078287031693	0.78619514174348	476.473416564	0	13.6408653172974						532	23	5	NaN	NaN	NaN	6.4041E-05	1	20878	54.199	42.242	1	345710			3558	3421	3029	3095	3558	3558		
DVVVQHVHFDGLGR	14	Unmodified	_DVVVQHVHFDGLGR_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.412788	1576.81102	1.6819	0.0013277	0.12399	9.7879E-05	1.8059	0.0014256	789.413414419745	9.4962	0.088676	9.4962	9.4608	9.5494	0	366	43	1.07994477139643	0.0280786163643747	1.07994477139643	436.33597591564	0	11.3447565081204						268	11	3	NaN	NaN	NaN	2.354E-06	1	20880	98.167	56.371	1	61668			3559	3421	3029	3095	3559	3559		
DVWGIEGPIDAAFTR	15	Unmodified	_DVWGIEGPIDAAFTR_			0	0	0	CON__Q3ZBS7;P04004	CON__Q3ZBS7	CON__Q3ZBS7	VTN	Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.912287	1645.81002	1.3895	0.0011449	0.68499	0.00056437	2.0745	0.0017092	824.414134069574	18.435	0.19515	18.435	18.319	18.515	0	384	46	1.06790610341098	0.030107052507665	1.06790610341098	431.314408349984	0	12.159875758766						604	23	4	NaN	NaN	NaN	0.00019324	1	22913	47.915	39.541	1	149610		+	3560	43	3030	3096	3560	3560		
DVYIVQDLMETDLYK	15	Unmodified	_DVYIVQDLMETDLYK_			0	0	0	P28482;P27361	P28482	P28482	MAPK1;MAPK3	Mitogen-activated protein kinase 1;Mitogen-activated protein kinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.95296	1843.89137	1.2828	0.001184	0.43216	0.00039887	1.715	0.0015828	923.454772282024	19.029	0.062075	19.029	19.002	19.064	0	261	58	1.14997238118939	0.0379209212295002	1.14997238118939	464.043235130297	0	15.3020605140607						362	8	4	NaN	NaN	NaN	4.7617E-06	1	28322	51.829	43.455	1	82444			3561	879	3031	3097	3561	3561		
DVYVQLYLQHLTAR	14	Unmodified	_DVYVQLYLQHLTAR_			0	0	0	P42167;P42166	P42167;P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.645661	1717.91515	-0.49363	-0.00028317	-0.8962	-0.0005141	-1.3898	-0.00079727	573.979627005156	15.242	0.13297	15.242	15.207	15.34	0	678	34	0.869855008346864	0.0223830071318586	0.869855008346864	526.798785743584	0	13.5555246164096						329	16	4	NaN	NaN	NaN	0.0016375	1	25002	38.584	32.207	1	96524			3562	1042;1043	3032	3098	3562	3562		
DVYVQLYLQHLTAR	14	Unmodified	_DVYVQLYLQHLTAR_			0	0	0	P42167;P42166	P42167;P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.964854	1717.91515	1.922	0.0016529	0.077641	6.6768E-05	1.9997	0.0017196	859.964884049526	15.242	0.16844	15.242	15.198	15.367	0	225	40	1.17390432875292	0.02591024903842	1.17390432875292	473.95965588757	0	10.4611699756288						484	20	4	NaN	NaN	NaN	1.474E-05	1	25003	80.815	61.258	1	177900			3563	1042;1043	3032	3098	3563	3563		
DWDELEEEAR	10	Unmodified	_DWDELEEEAR_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.275489	1290.53642	1.5208	0.00098285	-0.17196	-0.00011114	1.3488	0.00087171	646.275462045734	10.729	0.16848	10.729	10.676	10.844	0	573	40	0.940896116921038	0.0263245737571987	0.940896116921038	380.888622323027	0	10.6565756317833						468	20	4	NaN	NaN	NaN	2.8965E-07	1	12075	133.98	121.15	1	174760			3564	3430	3033	3099	3564	3564		
DWEDDSDEDMSNFDR	15	Unmodified	_DWEDDSDEDMSNFDR_			0	0	0	Q15185	Q15185	Q15185	PTGES3	Prostaglandin E synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.334134	1874.65372	2.3769	0.0022303	-1.431	-0.0013428	0.94585	0.00088753	938.333140139493	11.234	0.097547	11.234	11.19	11.287	0	348	46	1.09197348738011	0.0300572976074456	1.09197348738011	440.585214134407	0	12.1274014943809						360	12	4	NaN	NaN	NaN	2.4697E-12	1	29026	123.92	123.92	1	82519			3565	1823	3034	3100	3565	3565		
DWEMHVHFK	9	Unmodified	_DWEMHVHFK_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.190447	1227.54951	-1.384	-0.00056769	-1.7747	-0.00072795	-3.1586	-0.0012956	410.189928303236	8.6091	0.17746	8.6091	8.5559	8.7334	0	885	25	0.728786607772777	0.0164344731641031	0.728786607772777	442.771703113934	0	9.98470552976858						294	21	4	NaN	NaN	NaN	0.0068605	1	10215	51.43	40.07	1	79814			3566	1607	3035	3101	3566	3566		
DWEQFEYK	8	Unmodified	_DWEQFEYK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.750921	1143.48729	0.78062	0.0004471	0.74991	0.00042951	1.5305	0.00087661	572.751049306332	10.809	0.15961	10.809	10.746	10.906	0	624	31	0.906433495720521	0.020293211090572	0.906433495720521	367.436916146913	0	8.22616875594503						262	19	3	NaN	NaN	NaN	0.037142	1	7873	47.349	42.442	1	68524			3567	1782	3036	3102	3567	3567		
DWEQFHQPR	9	Unmodified	_DWEQFHQPR_			0	0	0	Q9H773	Q9H773	Q9H773	DCTPP1	dCTP pyrophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.859866	1241.55777	-1.3529	-0.00056126	0.28132	0.00011671	-1.0716	-0.00044455	414.859827916684	6.5249	0.062066	6.5249	6.4895	6.5515	0	891	16	0.724677416575734	0.0102751283393935	0.724677416575734	440.220015983386	0	6.24183541302119						65	8	2	NaN	NaN	NaN	0.0077912	1	10659	53.679	51.52	1	13877			3568	2912	3037	3103	3568	3568		
DWILPSDYDHAEAEAR	16	Unmodified	_DWILPSDYDHAEAEAR_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.955112	1886.84351	0.19135	0.00012054	0.086354	5.4399E-05	0.2777	0.00017494	630.289509822929	12.041	0.14196	12.041	11.988	12.13	0	651	91	0.888155670855968	0.0609388205841079	0.888155670855968	537.496781956718	0	36.8791429644631						1302	17	5	NaN	NaN	NaN	7.2888E-09	1	29297	119.43	107.41	1	685810			3569	241	3038	3104	3569	3569		
DWILPSDYDHAEAEAR	16	Unmodified	_DWILPSDYDHAEAEAR_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.429029	1886.84351	1.0211	0.00096431	0.50596	0.00047785	1.527	0.0014422	944.93102362195	12.041	0.088676	12.041	12.006	12.094	0	135	64	1.23356193185193	0.0417059030387732	1.23356193185193	497.689140690773	0	16.8265366408788						382	11	4	NaN	NaN	NaN	3.3734E-06	1	29298	55.782	48.206	1	85388			3570	241	3038	3104	3570	3570		
DWILPSDYDHAEAEAR	16	Unmodified	_DWILPSDYDHAEAEAR_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.429029	1886.84351	1.7922	0.0016926	0.43824	0.00041389	2.2304	0.0021065	944.930772510828	12.041	0.17737	12.041	11.997	12.174	0	237	91	1.16593139812432	0.0598216997176928	1.16593139812432	470.403131728361	0	24.1354808162699						1233	21	5	NaN	NaN	NaN	2.5311E-17	1	29299	151.52	117.33	1	518990			3571	241	3038	3104	3571	3571		
DWLFAPHYR	9	Unmodified	_DWLFAPHYR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	402.201452	1203.58253	-2.8885	-0.0011617	1.5635	0.00062884	-1.325	-0.0005329	402.20202443089	12.431	0.088654	12.431	12.378	12.467	0	834	13	0.763668499782291	0.00819778374705282	0.763668499782291	464.066605351403	0	4.98163493189026						62	11	2	NaN	NaN	NaN	0.0062419	1	9566	38.322	30.676	1	11852			3572	1790	3039	3105	3572	3572		
DWLFAPHYR	9	Unmodified	_DWLFAPHYR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.79854	1203.58253	0.57305	0.00034544	1.6787	0.0010119	2.2517	0.0013573	602.799365190018	12.431	0.14185	12.431	12.369	12.511	0	540	34	0.963152256458504	0.0222407417065758	0.963152256458504	390.196386941716	0	9.01026499041762						301	17	3	NaN	NaN	NaN	1.0284E-08	1	9568	134.85	92.016	1	80996			3573	1790	3039	3105	3573	3573		
DWLFHQIEENLR	12	Unmodified	_DWLFHQIEENLR_			0	0	0	Q9C0D5	Q9C0D5	Q9C0D5	TANC1	Protein TANC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.935323	1598.78414	-2.2694	-0.0012117	1.4773	0.00078877	-0.79214	-0.00042295	533.936278849039	17.158	0.044322	17.158	17.131	17.176	0	756	16	0.816857749704129	0.0102109182004034	0.816857749704129	494.997316857332	0	6.18758543171089						45	6	2	NaN	NaN	NaN	0.062413	1	21537	8.0012	8.0012	1	7663.5			3574	2821	3040	3106	3574	3574		
DWNEELQTTR	10	Unmodified	_DWNEELQTTR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.299298	1290.58404	1.5411	0.00099603	2.3249	0.0015026	3.866	0.0024986	646.298908581587	8.3785	0.17742	8.3785	8.343	8.5205	0	573	61	0.940896116921038	0.0404741262657745	0.940896116921038	380.888463406491	0	16.3845162965902						570	21	4	NaN	NaN	NaN	0.00012855	1	12079	76.85	65.49	1	151150			3575	307	3041	3107	3575	3575		
DWNVDLIPK	9	Unmodified	_DWNVDLIPK_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.292756	1098.57096	0.10724	5.9011E-05	-1.1837	-0.0006514	-1.0765	-0.00059239	550.292002234268	14.648	0.23054	14.648	14.515	14.746	0	657	97	0.884090832094921	0.064965366650379	0.884090832094921	358.554506584027	0	26.3475472640985						1248	27	4	NaN	NaN	NaN	0.000941	1	6671	92.732	59.306	1	450010			3576	1161;920	3042	3108	3576	3576		
DWQEGGYTINDK	12	Unmodified	_DWQEGGYTINDK_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.317688	1424.62082	1.6298	0.0011626	2.9524	0.002106	4.5822	0.0032686	713.31953141181	8.5205	0.12414	8.5205	8.485	8.6091	0	483	34	1.00151498427745	0.0221823754430851	1.00151498427745	405.023657976069	0	8.97079622931324						280	15	3	NaN	NaN	NaN	1.1553E-06	1	16212	142.71	126.25	1	74612			3577	260	3043	3109	3577	3577		
DWSHYFK	7	Unmodified	_DWSHYFK_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.72451	981.434466	-0.25692	-0.00012634	0.6502	0.00031972	0.39328	0.00019338	491.724734660643	9.3721	0.36359	9.3721	9.3011	9.6647	0	714	55	0.845418525735192	0.0366903942438199	0.845418525735192	343.376903874181	0	14.9022449755403						1138	42	6	NaN	NaN	NaN	0.0061936	1	3862	88.35	62.127	1	1110200			3578	536	3044	3110	3578	3578		
DWVLNEFK	8	Unmodified	_DWVLNEFK_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.766374	1049.5182	0.22678	0.00011924	-1.3575	-0.00071374	-1.1307	-0.00059451	525.76566903629	14.382	0.26598	14.382	14.32	14.586	-1.7764E-15	684	58	0.86578508874114	0.0386830482418505	0.86578508874114	351.333602069603	0	15.6974922005212						838	31	5	NaN	NaN	NaN	0.002175	1	5454	93.561	83.482	1	771670			3579	743	3045	3111	3579	3579		
DWVLNEFR	8	Unmodified	_DWVLNEFR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.769448	1077.52434	0.26061	0.00014067	-1.1664	-0.0006296	-0.90581	-0.00048893	539.768665375298	14.657	0.16848	14.657	14.595	14.764	-3.5527E-15	654	73	0.886123392477847	0.0487510374716118	0.886123392477847	359.465781944331	0	19.7763990366255						552	20	4	NaN	NaN	NaN	0.0038111	1	6142	81.32	69.671	1	312040			3580	2435	3046	3112	3580	3580		
DYAFIHFDER	10	Unmodified	_DYAFIHFDER_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.20341	1311.5884	-2.9513	-0.0012932	0.90541	0.00039675	-2.0458	-0.0008965	438.203864214789	12.272	0.10645	12.272	12.227	12.334	0	819	52	0.773912161060781	0.0347993662256366	0.773912161060781	469.85293021063	0	21.1271834366537						354	13	3	NaN	NaN	NaN	0.014871	1	12699	44.82	43.021	1	90318			3581	263	3047	3113	3581	3581		
DYAFIHFDER	10	Unmodified	_DYAFIHFDER_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.801477	1311.5884	1.1043	0.00072529	0.81247	0.00053363	1.9167	0.0012589	656.801996612919	12.263	0.22169	12.263	12.201	12.423	0	501	43	0.98941132619024	0.0282496839404589	0.98941132619024	400.460201588259	0	11.4339444335667						714	26	5	NaN	NaN	NaN	4.2543E-05	1	12700	121.8	113.61	1	449780			3582	263	3047	3113	3582	3582		
DYAFVHFEDR	10	Unmodified	_DYAFVHFEDR_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.531527	1297.57275	-2.2334	-0.00096825	0.22598	9.7971E-05	-2.0074	-0.00087028	433.531465719024	10.8	0.12416	10.8	10.764	10.888	0	783	22	0.798467866007927	0.0143112053912641	0.798467866007927	484.815541536946	0	8.68951035750672						178	15	3	NaN	NaN	NaN	0.026913	1	12274	26.947	24.788	1	41361			3583	196	3048	3114	3583	3583		
DYAFVHFEDR	10	Unmodified	_DYAFVHFEDR_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.793652	1297.57275	1.6637	0.0010811	1.1617	0.00075484	2.8254	0.0018359	649.794132688626	10.791	0.13301	10.791	10.755	10.888	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	396.419299533412	0	8.17480152699892						343	16	4	NaN	NaN	NaN	0.00029114	1	12277	97.277	90.127	1	110540			3584	196	3048	3114	3584	3584		
DYAFVHMEK	9	Unmodified	_DYAFVHMEK_			0	0	0	Q96PK6	Q96PK6	Q96PK6	RBM14	RNA-binding protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.263142	1138.51173	1.6869	0.00096196	0.5084	0.00028992	2.1953	0.0012519	570.263683200591	7.9704	0.1952	7.9704	7.935	8.1302	0	579	31	0.936845902828289	0.0202566836468107	0.936845902828289	379.784833162854	0	8.21178936259565						358	23	4	NaN	NaN	NaN	0.00016346	1	7749	122.44	85.866	1	157180			3585	2596	3049	3115	3585	3585		
DYAFVHMER	9	Unmodified	_DYAFVHMER_			0	0	0	Q9BWF3;Q9BQ04	Q9BWF3	Q9BWF3	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.266216	1166.51788	1.2523	0.0007317	1.0283	0.00060082	2.2807	0.0013325	584.26689549108	8.343	0.097593	8.343	8.3076	8.4051	0	576	31	0.938871150116794	0.0202510727946275	0.938871150116794	380.496483088696	0	8.20715598319362						230	12	4	NaN	NaN	NaN	0.00014137	1	8498	96.311	83.484	1	67894			3586	2778	3050	3116	3586	3586		
DYALHWLVLGTHTSDEQNHLVVAR	24	Unmodified	_DYALHWLVLGTHTSDEQNHLVVAR_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	694.355679	2773.39361	0.8042	0.0005584	0.070192	4.8738E-05	0.87439	0.00060714	694.606437604726	14.116	0.17733	14.116	14.072	14.249	0	561	40	0.948993180460448	0.0263136394103891	0.948993180460448	763.963590960953	0	21.1831474336399						711	21	6	NaN	NaN	NaN	8.9895E-52	1	37824	256.28	241.43	1	368590			3587	1890	3051	3117	3587	3587		
DYALHWLVLGTHTSDEQNHLVVAR	24	Unmodified	_DYALHWLVLGTHTSDEQNHLVVAR_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	925.471814	2773.39361	1.9383	0.0017938	0.43938	0.00040663	2.3776	0.0022004	925.806741134845	14.116	0.05322	14.116	14.09	14.143	0	330	46	1.10399226369747	0.0300407400465015	1.10399226369747	666.557545679039	0	18.1377013356184						243	7	4	NaN	NaN	NaN	1.4846E-06	1	37825	56.943	55.209	1	45288			3588	1890	3051	3117	3588	3588		
DYDAMGSQTK	10	Unmodified	_DYDAMGSQTK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.237321	1114.46009	1.5318	0.00085512	1.6227	0.00090583	3.1545	0.001761	558.238364980012	3.5455	0.25712	3.5455	3.51	3.7672	0	645	28	0.892219381832517	0.0182854326605286	0.892219381832517	361.787215980424	0	7.41458424906978						316	30	3	NaN	NaN	NaN	0.00095772	1	7099	69.716	65.176	1	73269			3589	3325	3052	3118	3589	3589		
DYDDMSPR	8	Unmodified	_DYDDMSPR_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.697832	997.38111	1.2562	0.00062772	0.71189	0.00035573	1.9681	0.00098345	499.698258711012	4.5563	0.26601	4.5563	4.4765	4.7425	0	684	49	0.86578508874114	0.0325684096984549	0.86578508874114	351.57131846887	0	13.2251281374789						654	31	4	NaN	NaN	NaN	0.0016165	1	4227	101.41	98.272	1	306980			3590	1360	3053	3119	3590	3590		
DYDDMSPR	8	Oxidation (M)	_DYDDM(Oxidation (M))SPR_	DYDDM(1)SPR	DYDDM(58)SPR	0	1	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.695289	1013.37602	0.86976	0.00044157	1.0556	0.00053594	1.9254	0.00097751	507.695895045181	2.6232	0.23056	2.6232	2.5523	2.7828	0	708	22	0.849494101904619	0.0142635264886745	0.849494101904619	344.881910250942	0	5.79077859551904						206	27	2	NaN	NaN	NaN	0.042452	1	4581	58.286	57.396	1	42453			3591	1360	3053	3120	3591	3591	485	
DYDGWTPLHAAAHWGK	16	Unmodified	_DYDGWTPLHAAAHWGK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.953265	1823.83797	-0.77669	-0.00047297	1.0426	0.00063491	0.26594	0.00016194	609.288403588139	11.899	0.1153	11.899	11.846	11.961	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	548.696359979122	0	9.82872288139913						240	14	4	NaN	NaN	NaN	0.017164	1	27822	46.068	30.452	1	55292			3592	131	3054	3121	3592	3592		
DYDHLFK	7	Unmodified	_DYDHLFK_			0	0	0	Q15286	Q15286	Q15286	RAB35	Ras-related protein Rab-35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.224342	936.434132	-0.32368	-0.00015188	0.95135	0.0004464	0.62767	0.00029452	469.224667291258	7.1811	0.15959	7.1811	7.128	7.2875	0	726	34	0.837263974740672	0.022429693259391	0.837263974740672	340.290573459469	0	9.11613709896244						295	19	3	NaN	NaN	NaN	0.021356	1	2992	63.301	46.754	1	81498			3593	1828	3055	3122	3593	3593		
DYEAGQLYGLEK	12	Unmodified	_DYEAGQLYGLEK_			0	0	0	Q6PKG0	Q6PKG0	Q6PKG0	LARP1	La-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.332807	1384.65106	1.2017	0.00083316	0.25619	0.00017763	1.4579	0.0010108	693.333417563031	10.303	0.20392	10.303	10.214	10.418	0	492	46	0.995464410099171	0.0302528786941803	0.995464410099171	402.688468472235	0	12.237991900707						525	24	6	NaN	NaN	NaN	0.00058925	1	14962	64.906	55.392	1	140730			3594	2079	3056	3123	3594	3594		
DYEEVGADSADGEDEGEEY	19	Unmodified	_DYEEVGADSADGEDEGEEY_			0	0	0	Q9BQE3	Q9BQE3	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.87708	2077.73961	2.034	0.0021151	0.096863	0.00010073	2.1309	0.0022158	1040.37863190441	9.443	0.1862	9.443	9.3898	9.576	0	276	103	1.13998907770044	0.0678912228582942	1.13998907770044	459.627940639375	0	27.3728087051431						1599	22	5	NaN	NaN	NaN	1.7997E-87	1	32981	375.5	375.07	1	536300			3595	2696	3057	3124	3595	3595		
DYEEVGVDSVEGEGEEEGEEY	21	Unmodified	_DYEEVGVDSVEGEGEEEGEEY_			0	0	0	P68363	P68363	P68363	TUBA1B	Tubulin alpha-1B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.95606	2347.89757	2.882	0.0033862	-1.4581	-0.0017132	1.4239	0.001673	1175.45548465479	12.768	0.17738	12.768	12.715	12.893	0	168	64	1.21171599086077	0.0417287938930775	1.21171599086077	488.173870851918	0	16.8116183944181						878	21	4	NaN	NaN	NaN	1.1515E-22	1	36027	213.77	211.53	1	204860			3596	1447	3058	3125	3596	3596		
DYEFMWNPHLGYILTCPSNLGTGLR	25	Unmodified	_DYEFMWNPHLGYILTCPSNLGTGLR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	985.470316	2953.38912	0.33316	0.00032832	1.0964	0.0010805	1.4296	0.0014088	985.80550353442	19.215	0.053192	19.215	19.197	19.25	0	384	31	1.06790610341098	0.0200782861239661	1.06790610341098	644.57370670991	0	12.1189824367231						201	7	5	NaN	NaN	NaN	6.2615E-10	1	38150	71.471	70.829	1	38998			3597	668	3059	3126	3597	3597		
DYEHQFHLR	9	Unmodified	_DYEHQFHLR_			0	0	0	Q15276	Q15276	Q15276	RABEP1	Rab GTPase-binding effector protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.53175	1243.57342	-1.0227	-0.00042498	0.33826	0.00014056	-0.68448	-0.00028442	415.531909883401	6.0638	0.070959	6.0638	6.0283	6.0993	0	858	19	0.747263789720611	0.0123103940728497	0.747263789720611	453.932488180875	0	7.47806583009333						65	9	3	NaN	NaN	NaN	0.036983	1	10724	20.659	16.456	1	12087			3598	1827	3060	3127	3598	3598		
DYEIESQNPLASPTNTLLGSAK	22	Unmodified	_DYEIESQNPLASPTNTLLGSAK_			0	0	0	Q7Z417	Q7Z417	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.58444	2347.15433	1.1965	0.0014054	-2.562	-0.0030093	-1.3655	-0.0016039	1175.08328822388	15.42	0.097653	15.42	15.375	15.473	0	93	46	1.26131825079847	0.0296961677825143	1.26131825079847	508.158486814479	0	11.9639588779426						255	12	3	NaN	NaN	NaN	5.6917E-06	1	36023	52.149	49.434	1	49473			3599	2134	3061	3128	3599	3599		
DYENDEDVNK	10	Unmodified	_DYENDEDVNK_			0	0	0	O43617	O43617	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.751847	1239.48914	2.0612	0.0012795	0.16852	0.00010461	2.2297	0.0013841	620.751867720742	3.0222	0.15071	3.0222	2.9868	3.1375	0	624	25	0.906433495720521	0.0162390708699242	0.906433495720521	367.097635809939	0	6.57668163438791						220	18	3	NaN	NaN	NaN	0.0018911	1	10595	67.507	56.147	1	47836			3600	212	3062	3129	3600	3600		
DYETATLSDIK	11	Unmodified	_DYETATLSDIK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.306258	1254.59796	0.90446	0.00056828	4.625	0.0029059	5.5294	0.0034742	628.308140561502	9.5494	0.14187	9.5494	9.4962	9.6381	0	510	25	0.983355730988811	0.0161516048852366	0.983355730988811	398.197615027161	0	6.54039056415019						228	17	5	NaN	NaN	NaN	0.00023982	1	11054	65.933	55.231	1	39162			3601	221	3063	3130	3601	3601		
DYFDMFAPK	9	Unmodified	_DYFDMFAPK_			0	0	0	P49023	P49023	P49023	PXN	Paxillin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.252243	1132.48993	0.48544	0.00027536	0.47362	0.00026866	0.95906	0.00054403	567.252897146344	15.517	0.10653	15.517	15.455	15.562	0	642	31	0.894250814548268	0.020312920651839	0.894250814548268	362.54041626836	0	8.23511098780926						232	13	3	NaN	NaN	NaN	0.019223	1	7591	31.952	25.722	1	56391			3602	1121	3064	3131	3602	3602		
DYFEEYGK	8	Unmodified	_DYFEEYGK_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.724372	1049.43419	1.3051	0.00068611	0.4426	0.00023269	1.7477	0.0009188	525.724600505862	7.9793	0.22181	7.9793	7.9172	8.139	-8.8818E-16	642	43	0.894250814548268	0.0284380921957725	0.894250814548268	362.885295962776	0	11.5401242416454						776	26	4	NaN	NaN	NaN	0.0065297	1	5447	72.492	67.585	1	550930			3603	808	3065	3132	3603	3603		
DYFFALAHTVR	11	Unmodified	_DYFFALAHTVR_			0	0	0	P11216	P11216	P11216	PYGB	Glycogen phosphorylase, brain form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.343312	1338.67207	1.8466	0.0012378	0.63937	0.0004286	2.4859	0.0016664	670.343846235455	13.575	0.088691	13.575	13.531	13.62	0	420	25	1.04379886199097	0.0160848033247041	1.04379886199097	422.384224537348	0	6.50888540554826						176	11	3	NaN	NaN	NaN	0.00016792	1	13557	81.099	74.835	1	49469			3604	646	3066	3133	3604	3604		
DYFGAHTYELLAK	13	Unmodified	_DYFGAHTYELLAK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.920791	1526.74054	-2.2825	-0.0011639	0.56535	0.00028828	-1.7171	-0.00087559	509.921061577266	12.573	0.14183	12.573	12.538	12.68	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	485.28865501496	0	12.393104146711						277	17	4	NaN	NaN	NaN	0.014175	1	19315	41.824	36.995	1	63120			3605	1205	3067	3134	3605	3605		
DYFGAHTYELLAK	13	Unmodified	_DYFGAHTYELLAK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.920791	1526.74054	-0.028928	-1.4751E-05	0.58326	0.00029741	0.55433	0.00028266	509.921090602694	12.573	0.15075	12.573	12.52	12.671	0	654	76	0.886123392477847	0.0508493204043962	0.886123392477847	537.188018794192	0	30.8260067581407						789	18	5	NaN	NaN	NaN	0.0034944	1	19317	54.584	49.433	1	397590			3606	1205	3067	3134	3606	3606		
DYFGAHTYELLAK	13	Unmodified	_DYFGAHTYELLAK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.377549	1526.74054	2.475	0.0018919	3.3498	0.0025605	5.8248	0.0044523	764.380329935416	12.564	0.31923	12.564	12.511	12.83	0	333	64	1.10198982404297	0.0420512546798575	1.10198982404297	445.370044898922	0	16.9950473009939						1118	37	6	NaN	NaN	NaN	4.2286E-24	1	19320	228.13	214.33	1	1303800			3607	1205	3067	3134	3607	3607		
DYFGLLFQESPEQK	14	Unmodified	_DYFGLLFQESPEQK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.911953	1699.80935	1.4396	0.0012249	-2.3724	-0.0020187	-0.93285	-0.00079377	850.909621453955	17.45	0.12413	17.45	17.397	17.521	0	354	76	1.08796502040166	0.0500817189530267	1.08796502040166	439.299424538962	0	20.2220383040112						756	15	4	NaN	NaN	NaN	6.9998E-06	1	24485	108.24	100.24	1	216250			3608	206	3068	3135	3608	3608		
DYFLEFEGDPHCLR	14	Unmodified	_DYFLEFEGDPHCLR_			0	0	0	Q14344	Q14344	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.398686	1796.78282	1.3299	0.0011961	0.61592	0.00055396	1.9459	0.0017501	899.399721643514	13.664	0.070917	13.664	13.629	13.7	0	234	25	1.16792504164217	0.0159480534930851	1.16792504164217	471.379837224965	0	6.43670663063733						169	9	4	NaN	NaN	NaN	1.3578E-11	1	27126	112.7	108.97	1	37065			3609	1749	3069	3136	3609	3609		
DYFLFRDGDILGK	13	Unmodified	_DYFLFRDGDILGK_			0	0	1	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.268191	1557.78274	-1.6354	-0.00085083	0.31478	0.00016377	-1.3206	-0.00068706	520.268553606873	16.058	0.079814	16.058	16.032	16.111	0	768	25	0.808687310729125	0.0163454259019459	0.808687310729125	490.156840753884	0	9.90719430684641						138	10	3	NaN	NaN	NaN	0.024479	1	20291	29.317	24.166	1	31638			3610	1347	3070	3137	3610	3610		
DYFNVPYPLPK	11	Unmodified	_DYFNVPYPLPK_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.847896	1351.68124	0.78922	0.00053418	-0.5765	-0.00039021	0.21272	0.00014398	676.847480581133	15.313	0.18618	15.313	15.225	15.411	0	513	46	0.981336640919867	0.0302989286426463	0.981336640919867	397.069176684238	0	12.259575510472						630	22	4	NaN	NaN	NaN	5.0306E-06	1	13935	103.8	89.809	1	225470			3611	1277	3071	3138	3611	3611		
DYGNSPLHR	9	Unmodified	_DYGNSPLHR_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	353.505312	1057.49411	-0.59819	-0.00021146	1.3952	0.0004932	0.79699	0.00028174	353.505628133031	3.5721	0.14191	3.5721	3.5189	3.6608	0	891	16	0.724677416575734	0.0102736948748251	0.724677416575734	441.060151485987	0	6.2528751609546						135	17	2	NaN	NaN	NaN	0.0076384	1	5649	33.396	26.633	1	30216			3612	856	3072	3139	3612	3612		
DYGNSPLHR	9	Unmodified	_DYGNSPLHR_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.75433	1057.49411	1.4629	0.00077497	1.6595	0.00087915	3.1224	0.0016541	529.755238768269	3.5633	0.37239	3.5633	3.4834	3.8558	0	687	49	0.863749705078866	0.0325638877438675	0.863749705078866	350.473397908193	0	13.2130596625236						694	43	2	NaN	NaN	NaN	2.7851E-06	1	5650	158.61	143.11	1	475010			3613	856	3072	3139	3613	3613		
DYGVFIQFPSGLSGLAPK	18	Unmodified	_DYGVFIQFPSGLSGLAPK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.498726	1894.9829	1.3662	0.0012958	-1.1462	-0.0010872	0.22	0.00020867	948.999232355472	19.446	0.10644	19.446	19.383	19.49	0	237	55	1.16593139812432	0.0358683429143114	1.16593139812432	470.388388748615	0	14.4708788679063						257	13	3	NaN	NaN	NaN	0.0022381	1	29502	39.82	35.003	1	43464			3614	1766	3073	3140	3614	3614		
DYGVLLEGSGLALR	14	Unmodified	_DYGVLLEGSGLALR_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.898648	1461.78274	0.99322	0.00072694	0.028219	2.0654E-05	1.0214	0.00074759	731.898898727624	16.262	0.23942	16.262	16.191	16.431	0	444	172	1.02770517576159	0.114486128386096	1.02770517576159	415.513660022273	0	46.288129464984						2097	28	5	NaN	NaN	NaN	0.0011975	1	17326	65.879	44.518	1	893040			3615	898	3074	3141	3615	3615		
DYGVYLEDSGHTLR	14	Unmodified	_DYGVYLEDSGHTLR_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.258243	1623.7529	0.90608	0.00049133	0.97987	0.00053134	1.886	0.0010227	542.259280647423	9.7356	0.19513	9.7356	9.6824	9.8776	0	660	52	0.882057989648486	0.0345487443998951	0.882057989648486	534.436680041005	0	20.9329958725541						434	23	4	NaN	NaN	NaN	0.0020371	1	22297	81.799	77.553	1	129260			3616	1637	3075	3142	3616	3616		
DYGVYLEDSGHTLR	14	Unmodified	_DYGVYLEDSGHTLR_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.883726	1623.7529	3.2198	0.0026173	-0.07618	-6.1926E-05	3.1436	0.0025554	812.883664776624	9.7356	0.23942	9.7356	9.6026	9.842	0	276	82	1.13998907770044	0.0539766724414961	1.13998907770044	460.480063388902	0	21.802999724804						846	28	5	NaN	NaN	NaN	6.4291E-33	1	22298	248.69	238.95	1	639120			3617	1637	3075	3142	3617	3617		
DYHGLIHIR	9	Unmodified	_DYHGLIHIR_			0	0	0	Q96EB1	Q96EB1	Q96EB1	ELP4	Elongator complex protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	375.205085	1122.59343	-0.92503	-0.00034707	-0.56909	-0.00021353	-1.4941	-0.0005606	375.204846611226	6.8264	0.079792	6.8264	6.7909	6.8707	0	885	22	0.728786607772777	0.0143811668140997	0.728786607772777	443.230922632482	0	8.74628837517338						141	10	3	NaN	NaN	NaN	0.0058236	1	7340	60.709	46.173	1	33164			3618	2509	3076	3143	3618	3618		
DYIAYAHSTIMPR	13	Unmodified	_DYIAYAHSTIMPR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.377026	1536.7395	2.3397	0.0018001	0.19891	0.00015304	2.5386	0.0019531	769.377500395631	10.259	0.18618	10.259	10.17	10.356	0	336	34	1.09998710857178	0.022035943167249	1.09998710857178	444.534666419845	0	8.90532313403065						376	22	4	NaN	NaN	NaN	0.00034752	1	19628	47.361	40.984	1	83061			3619	950	3077	3144	3619	3619		
DYIDGVYDNAEYAER	15	Unmodified	_DYIDGVYDNAEYAER_			0	0	0	Q6YHK3	Q6YHK3	Q6YHK3	CD109	CD109 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.886663	1791.75877	2.2683	0.0020344	-1.5572	-0.0013966	0.71109	0.00063777	896.885196739678	11.287	0.079808	11.287	11.243	11.323	0	318	25	1.11199926528787	0.0160117991526911	1.11199926528787	448.817585991449	0	6.46257355325719						108	10	2	NaN	NaN	NaN	9.9885E-05	1	27003	73.891	71.789	1	41066			3620	2095	3078	3145	3620	3620		
DYIPVDQEELRDYVK	15	Unmodified	_DYIPVDQEELRDYVK_			0	0	1	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.979146	1880.91561	0.10468	6.5735E-05	-0.58599	-0.00036799	-0.48131	-0.00030226	627.978423959984	12.582	0.14186	12.582	12.502	12.644	0	621	40	0.908462957275599	0.026386663985959	0.908462957275599	549.79904466347	0	15.9691295447451						392	17	4	NaN	NaN	NaN	0.039956	1	29166	48.701	45.413	1	95672			3621	1737	3079	3146	3621	3621		
DYIVVGSDSGR	11	Unmodified	_DYIVVGSDSGR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.28566	1166.55677	0.97837	0.00057165	1.8324	0.0010707	2.8108	0.0016423	584.286593025788	7.0569	0.18629	7.0569	7.0037	7.19	0	573	34	0.940896116921038	0.0222746380512064	0.940896116921038	381.316989624547	0	9.02724304406422						305	22	3	NaN	NaN	NaN	5.1023E-05	1	8502	95.311	82.484	1	75424			3622	1841	3080	3147	3622	3622		
DYIYAVTPLLEDALMDR	17	Unmodified	_DYIYAVTPLLEDALMDR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.498066	1996.98158	0.68556	0.00068522	2.268	0.0022668	2.9535	0.002952	999.500578169976	20.057	0.062056	20.057	20.031	20.093	0	153	25	1.22165005014568	0.015889045666919	1.22165005014568	492.684731004243	0	6.40796453074807						86	8	4	NaN	NaN	NaN	0.037483	1	31580	19.89	14.503	1	29677			3623	343	3081	3148	3623	3623		
DYLDFLDDEEDQGIYQSK	18	Unmodified	_DYLDFLDDEEDQGIYQSK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.97895	2191.94334	0.61448	0.00067407	1.6571	0.0018178	2.2715	0.0024918	1097.48224612717	17.184	0.12413	17.184	17.131	17.255	0	126	73	1.23951419873743	0.0476018506212397	1.23951419873743	499.582196780967	0	19.1857722391739						914	15	5	NaN	NaN	NaN	1.7671E-34	1	34584	178.51	166.13	1	339500			3624	835	3082	3149	3624	3624		
DYLHLPPEIVPATLR	15	Unmodified	_DYLHLPPEIVPATLR_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.657678	1732.95121	-2.3183	-0.0013415	-1.0163	-0.00058807	-3.3346	-0.0019296	578.657108342953	16.395	0.266	16.395	16.307	16.573	0	747	25	0.822982596624503	0.0163272492665953	0.822982596624503	498.377493067454	0	9.88737014798124						191	31	2	NaN	NaN	NaN	0.055523	1	25416	28.328	21.951	1	45017			3625	1091	3083	3150	3625	3625		
DYLHLPPEIVPATLR	15	Unmodified	_DYLHLPPEIVPATLR_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.657678	1732.95121	-1.5805	-0.00091457	-0.64372	-0.00037249	-2.2242	-0.0012871	578.657340094262	16.377	0.20393	16.377	16.307	16.51	0	693	34	0.85967808974117	0.0223985529654932	0.85967808974117	520.599356171164	0	13.5639984223772						276	24	3	NaN	NaN	NaN	0.0025182	1	25417	42.061	36.033	1	48009			3626	1091	3083	3150	3626	3626		
DYLHLPPEIVPATLR	15	Unmodified	_DYLHLPPEIVPATLR_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.657678	1732.95121	-2.5518	-0.0014766	0.48992	0.00028349	-2.0619	-0.0011931	578.65798124444	15.987	0.37243	15.987	15.89	16.262	0	786	28	0.796423123669906	0.0184052442534667	0.796423123669906	482.293740689667	0	11.1457513418339						832	43	4	NaN	NaN	NaN	0.001814	1	25418	68.548	66.96	1	292520			3627	1091	3083	3150	3627	3627		
DYLHLPPEIVPATLR	15	Unmodified	_DYLHLPPEIVPATLR_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.657678	1732.95121	-0.37966	-0.00021969	-1.2709	-0.0007354	-1.6505	-0.00095509	578.656928481536	15.978	0.50545	15.978	15.881	16.386	1.7764E-15	621	172	0.908462957275599	0.1159851103864	0.908462957275599	550.142243546769	0	70.2376561806653						3676	58	6	NaN	NaN	NaN	0.00013851	1	25419	92.707	83.901	1	1418400			3628	1091	3083	3150	3628	3628		
DYLHYIR	7	Unmodified	_DYLHYIR_			0	0	0	P62280	P62280	P62280	RPS11	40S ribosomal protein S11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.253434	978.492316	0.98154	0.0004812	0.85814	0.00042071	1.8397	0.00090191	490.253870292371	8.0414	0.29284	8.0414	7.9881	8.281	0	672	43	0.873923798053065	0.0284815345298798	0.873923798053065	354.969411141097	0	11.5685985013677						612	34	4	NaN	NaN	NaN	0.00081431	1	3806	119.06	88.001	1	620870			3629	1380	3084	3151	3629	3629		
DYLLMEEEFIR	11	Unmodified	_DYLLMEEEFIR_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.352685	1456.69082	0.074619	5.4423E-05	-1.1262	-0.00082142	-1.0516	-0.000767	729.35072894647	17.309	0.20396	17.309	17.22	17.424	0	462	46	1.01562323939346	0.0302111061455164	1.01562323939346	410.642249112528	0	12.2151168805286						440	24	4	NaN	NaN	NaN	0.00023982	1	17144	65.933	28.341	1	116280			3630	1368	3085	3152	3630	3630		
DYNDADMAR	9	Unmodified	_DYNDADMAR_			0	0	0	Q14696	Q14696	Q14696	MESDC2	LDLR chaperone MESD	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.714013	1069.41347	1.8245	0.00097743	0.8251	0.00044202	2.6496	0.0014194	535.714275022562	3.8558	0.16845	3.8558	3.8292	3.9977	0	687	31	0.863749705078866	0.0203580790440647	0.863749705078866	350.423182016656	0	8.25927093974104						162	20	3	NaN	NaN	NaN	0.0098907	1	5941	39.324	38.434	1	28273			3631	1770	3086	3153	3631	3631		
DYNEAYNYYTK	11	Unmodified	_DYNEAYNYYTK_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.306789	1442.59903	2.1063	0.0015214	4.1014	0.0029625	6.2077	0.0044838	722.309325034106	7.8197	0.12415	7.8197	7.7842	7.9083	0	468	37	1.01159370163332	0.024180571015918	1.01159370163332	409.050571530468	0	9.77771646662507						292	15	4	NaN	NaN	NaN	0.050685	1	16738	23.804	22.654	1	94858			3632	2658	3087	3154	3632	3632		
DYNVTANSK	9	Unmodified	_DYNVTANSK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.240721	1010.46689	0.8986	0.00045491	0.50326	0.00025477	1.4019	0.00070968	506.240991427134	3.0666	0.30146	3.0666	2.9779	3.2794	0	741	58	0.827064408645228	0.0387583668905448	0.827064408645228	335.788743408499	0	15.7359247704302						516	35	2	NaN	NaN	NaN	0.0421	1	4511	50.834	44.072	1	364510			3633	471	3088	3155	3633	3633		
DYPDFSPSVDAEAIQK	16	Unmodified	_DYPDFSPSVDAEAIQK_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.415056	1780.81556	2.35	0.0020949	1.6165	0.001441	3.9666	0.0035359	891.918116564997	12.316	0.28379	12.316	12.165	12.449	0	306	76	1.12000185836644	0.0499921523984095	1.12000185836644	452.068859917764	0	20.1784445005715						1241	33	5	NaN	NaN	NaN	0.004614	1	26699	51.829	43.023	1	491730			3634	669	3089	3156	3634	3634		
DYPFHEEF	8	Unmodified	_DYPFHEEF_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.224539	1082.43453	-1.0294	-0.00055817	-0.7632	-0.00041383	-1.7926	-0.000972	542.224117147511	12.201	0.20397	12.201	12.094	12.298	0	738	28	0.829104889055312	0.0183617725733707	0.829104889055312	336.316332411259	0	7.44823012138056						333	24	3	NaN	NaN	NaN	0.06404	1	6256	33.813	30.673	1	74848			3635	708	3090	3157	3635	3635		
DYPFHEEF	8	Unmodified	_DYPFHEEF_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.224539	1082.43453	-0.13942	-7.5598E-05	-1.0335	-0.00056039	-1.1729	-0.00063599	542.223941494088	12.192	0.24834	12.192	12.086	12.334	0	690	40	0.86171403876517	0.0264636674362559	0.86171403876517	349.543839285865	0	10.7346654471461						702	29	4	NaN	NaN	NaN	0.037435	1	6257	58.687	47.859	1	253420			3636	708	3090	3157	3636	3636		
DYPQLVLPNFDMLYNHVK	18	Unmodified	_DYPQLVLPNFDMLYNHVK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.03823	2205.09286	-0.46285	-0.00034067	0.73391	0.00054018	0.27106	0.00019951	736.37293072438	18.825	0.070955	18.825	18.781	18.851	0	585	28	0.932794566565362	0.0182348035691394	0.932794566565362	563.91696994409	0	11.0237725913192						152	9	3	NaN	NaN	NaN	0.001987	1	34737	35.246	34.151	1	28004			3637	2947	3091	3158	3637	3637		
DYPVVSIEDPFDQDDWGAWQK	21	Unmodified	_DYPVVSIEDPFDQDDWGAWQK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.376405	2509.10738	0.40291	0.00033739	-0.25798	-0.00021603	0.14493	0.00012137	837.710374851021	19.446	0.11518	19.446	19.401	19.516	0	624	49	0.906433495720521	0.0324736460639303	0.906433495720521	547.564952378376	0	19.6169167892608						548	14	6	NaN	NaN	NaN	2.4401E-30	1	36874	246.85	244.79	1	301890			3638	544	3092	3159	3638	3638		
DYPVVSIEDPFDQDDWGAWQK	21	Unmodified	_DYPVVSIEDPFDQDDWGAWQK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1255.56097	2509.10738	1.2148	0.0015253	0.84761	0.0010642	2.0624	0.0025895	1256.06379504977	19.446	0.16848	19.446	19.383	19.552	0	66	94	1.27913350869533	0.0613973543482473	1.27913350869533	515.139997964628	0	24.7262954015249						1325	20	7	NaN	NaN	NaN	2.0975E-29	1	36875	159.82	157.85	1	1072900			3639	544	3092	3159	3639	3639		
DYSDHPSGGSYR	12	Unmodified	_DYSDHPSGGSYR_			0	0	0	P38159;Q96E39	P38159	P38159	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.77873	1339.54291	2.4149	0.0016199	-0.28331	-0.00019004	2.1316	0.0014298	670.77868647396	2.7917	0.23057	2.7917	2.7119	2.9424	0	573	43	0.940896116921038	0.0283554323651288	0.940896116921038	380.74101719119	0	11.474248822414						440	27	4	NaN	NaN	NaN	0.00065174	1	13570	48.785	0	1	87549			3640	1004	3093	3160	3640	3640		
DYSGQGVVK	9	Unmodified	_DYSGQGVVK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.740357	951.46616	0.47601	0.00022693	0.8719	0.00041567	1.3479	0.0006426	476.741251488994	3.6519	0.19504	3.6519	3.5898	3.7849	0	732	37	0.833184998970724	0.0244806636319601	0.833184998970724	338.555367923753	0	9.94744275662015						371	23	3	NaN	NaN	NaN	0.012745	1	3271	60.709	33.004	1	82645			3641	300	3094	3161	3641	3641		
DYSGYQR	7	Unmodified	_DYSGYQR_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.695949	887.377345	-0.41218	-0.00018329	1.6138	0.00071766	1.2016	0.00053437	444.696559983076	2.8094	0.26601	2.8094	2.774	3.04	0	819	28	0.773912161060781	0.0184308879834895	0.773912161060781	314.79372887292	0	7.49688174793528						276	31	3	NaN	NaN	NaN	0.015457	1	2105	64.547	50.995	1	58651			3642	1752	3095	3162	3642	3642		
DYSLDEFEANK	11	Unmodified	_DYSLDEFEANK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.793514	1329.57248	1.2961	0.00086291	0.30313	0.00020182	1.5992	0.0010647	665.793869446463	10.817	0.11522	10.817	10.773	10.888	0	576	46	0.938871150116794	0.0303703038284173	0.938871150116794	379.95068811824	0	12.2905233977332						275	14	3	NaN	NaN	NaN	1.5533E-05	1	13263	120.33	105.57	1	86423			3643	3136	3096	3163	3643	3643		
DYSLLPLLAAAPQVGEK	17	Unmodified	_DYSLLPLLAAAPQVGEK_			0	0	0	P38432	P38432	P38432	COIL	Coilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.993277	1783.972	0.75861	0.00067744	-1.1744	-0.0010488	-0.41582	-0.00037132	893.493448102823	19.286	0.097544	19.286	19.224	19.321	0	309	28	1.11800162319566	0.0180021182425405	1.11800162319566	451.25534137739	0	7.26613615267712						196	12	3	NaN	NaN	NaN	1.8034E-06	1	26815	59.67	52.113	1	48650			3644	1005	3097	3164	3644	3644		
DYSVTANSK	9	Unmodified	_DYSVTANSK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.735271	983.45599	0.71905	0.0003543	0.72664	0.00035804	1.4457	0.00071234	492.735538830476	3.102	0.17734	3.102	3.0488	3.2262	0	744	40	0.82502364452135	0.0265336280455829	0.82502364452135	335.083758150486	0	10.7766460536283						363	21	3	NaN	NaN	NaN	0.00014931	1	3904	79.059	72.296	1	186210			3645	553	3098	3165	3645	3645		
DYSVTANSK	9	Unmodified	_DYSVTANSK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.735271	983.45599	0.78788	0.00038822	1.0557	0.00052018	1.8436	0.0009084	492.735683404937	3.173	0.23055	3.173	3.1198	3.3503	0	735	34	0.831145085810763	0.0224390480115776	0.831145085810763	337.569982999498	0	9.1136303217196						279	27	2	NaN	NaN	NaN	0.053135	1	3905	43.734	35.552	1	92991			3646	553	3098	3165	3646	3646		
DYTGCSTSESLSPVK	15	Unmodified	_DYTGCSTSESLSPVK_			0	0	0	O95297	O95297	O95297	MPZL1	Myelin protein zero-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.866885	1629.71922	2.7508	0.0022443	-0.77497	-0.00063227	1.9758	0.001612	815.866026515184	7.3585	0.12412	7.3585	7.3142	7.4383	-8.8818E-16	363	55	1.08195024817156	0.0360911337192322	1.08195024817156	437.022689493533	0	14.5779756060915						363	15	4	NaN	NaN	NaN	1.2466E-08	1	22457	150.44	140.36	1	77001			3647	417	3099	3166	3647	3647		
DYTGEDVTPQNFLAVLR	17	Unmodified	_DYTGEDVTPQNFLAVLR_			0	0	0	Q99538	Q99538	Q99538	LGMN	Legumain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.483805	1936.95306	1.3913	0.0013489	-0.20845	-0.00020209	1.1829	0.0011468	969.985085454886	18.914	0.079783	18.914	18.869	18.949	0	288	34	1.13199748998575	0.0219814046771438	1.13199748998575	456.626009167536	0	8.86687575053463						166	10	3	NaN	NaN	NaN	1.513E-06	1	30456	63.908	62.32	1	31055			3648	2648	3100	3167	3648	3648		
DYTSGAMLTGELK	13	Unmodified	_DYTSGAMLTGELK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.334492	1384.65443	1.2557	0.0008706	1.0206	0.0007076	2.2762	0.0015782	693.334785848396	11.27	0.15966	11.27	11.19	11.35	0	501	61	0.98941132619024	0.0403343924406536	0.98941132619024	400.239842817017	0	16.3161977867465						400	19	3	NaN	NaN	NaN	0.00037285	1	14964	60	48.043	1	96912			3649	818	3101	3168	3649	3649		
DYVDEQTGDGPVK	13	Unmodified	_DYVDEQTGDGPVK_			0	0	0	Q96JG6	Q96JG6	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.822803	1421.63105	2.3582	0.0016786	-3.1545	-0.0022454	-0.79629	-0.00056682	712.32106115334	5.6736	0.18626	5.6736	5.6203	5.8066	0	495	40	0.993446994398923	0.0262227841979634	0.993446994398923	401.769022047461	0	10.6049969671021						321	22	3	NaN	NaN	NaN	0.0058546	1	16130	71.066	65.57	1	63949			3650	2567	3102	3169	3650	3650		
DYVDLFR	7	Unmodified	_DYVDLFR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.232168	926.449782	-1.6783	-0.0007791	-0.82449	-0.00038275	-2.5028	-0.0011619	464.231692524519	13.292	0.079782	13.292	13.256	13.336	0	747	25	0.822982596624503	0.0163317905819258	0.822982596624503	334.538303589176	0	6.63879107317746						144	10	3	NaN	NaN	NaN	0.030496	1	2804	54.056	40.504	1	30932			3651	1465	3103	3170	3651	3651		
DYYCILGIEK	10	Unmodified	_DYYCILGIEK_			0	0	0	Q9UDY4	Q9UDY4	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.310289	1272.60602	1.4576	0.00092897	0.076047	4.8465E-05	1.5337	0.00097743	637.310491891556	13.903	0.12418	13.903	13.85	13.974	0	537	31	0.965173861991602	0.0202118620218336	0.965173861991602	390.774903270428	0	8.18328048192217						296	15	4	NaN	NaN	NaN	0.00079749	1	11565	69.915	62.764	1	95632			3652	3197	3104	3171	3652	3652		
DYYFDSYAHFGIHEEMLK	18	Unmodified	_DYYFDSYAHFGIHEEMLK_			0	0	0	Q99873;Q9NR22	Q99873	Q99873	PRMT1;PRMT8	Protein arginine N-methyltransferase 1;Protein arginine N-methyltransferase 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.670095	2263.98846	0.86503	0.00065368	0.44341	0.00033507	1.3084	0.00098875	756.00483619964	14.267	0.11528	14.267	14.232	14.347	1.7764E-15	495	19	0.993446994398923	0.0121053314145333	0.993446994398923	600.486395994859	0	7.31703540744468						166	14	4	NaN	NaN	NaN	0.037777	1	35306	20.29	19.925	1	28365			3653	2681	3105	3172	3653	3653		
DYYQTLGLAR	10	Unmodified	_DYYQTLGLAR_			0	0	0	P25685	P25685	P25685	DNAJB1	DnaJ homolog subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.306395	1198.59824	0.83794	0.00050302	2.3026	0.0013823	3.1406	0.0018853	600.307590500514	11.216	0.15073	11.216	11.172	11.323	0	567	43	0.944945209309785	0.0283436532440857	0.944945209309785	382.838311312359	0	11.4832439357143						466	18	4	NaN	NaN	NaN	0.0096544	1	9419	65.156	53.089	1	162610			3654	839	3106	3173	3654	3654		
EAAAALVEEETRR	13	Unmodified	_EAAAALVEEETRR_			0	0	1	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.873162	1443.73177	2.2333	0.0016144	-0.54679	-0.00039526	1.6865	0.0012191	722.873202866421	6.7909	0.14188	6.7909	6.7466	6.8885	0	414	34	1.04781950764076	0.0221089774592802	1.04781950764076	423.695790728183	0	8.93997546189314						245	17	4	NaN	NaN	NaN	0.00030761	1	16781	101.45	62.406	1	63365			3655	370	3107	3174	3655	3655		
EAAASGLPLMVIIHK	15	Unmodified	_EAAASGLPLMVIIHK_			0	0	0	O95881	O95881	O95881	TXNDC12	Thioredoxin domain-containing protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.297205	1548.86978	0.058249	3.0132E-05	-2.5084	-0.0012976	-2.4501	-0.0012674	517.295460616822	14.666	0.27488	14.666	14.524	14.799	0	678	34	0.869855008346864	0.0223830071318586	0.869855008346864	527.258156343395	0	13.5673450868477						692	32	5	NaN	NaN	NaN	0.003198	1	20016	40.533	37.655	1	359240			3656	461	3108	3175	3656	3656		
EAAASGLPLMVIIHK	15	Unmodified	_EAAASGLPLMVIIHK_			0	0	0	O95881	O95881	O95881	TXNDC12	Thioredoxin domain-containing protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.442169	1548.86978	1.5708	0.001218	0.49964	0.00038744	2.0704	0.0016055	775.944013934216	14.657	0.45225	14.657	14.533	14.985	0	375	67	1.07392668217569	0.0441418061046637	1.07392668217569	433.972591107071	0	17.8376552974525						1453	52	4	NaN	NaN	NaN	9.6026E-05	1	20018	92.445	84.887	1	509070			3657	461	3108	3175	3657	3657		
EAADWVSGHFPSPIR	15	Unmodified	_EAADWVSGHFPSPIR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.942478	1667.8056	-1.3932	-0.00077594	1.3955	0.00077723	0.002318	1.291E-06	557.277849020846	12.6	0.14186	12.6	12.511	12.653	0	747	43	0.822982596624503	0.0285846129737781	0.822982596624503	498.531754664291	0	17.3154782624391						381	17	3	NaN	NaN	NaN	0.020287	1	23565	21.361	16.21	1	82166			3658	878	3109	3176	3658	3658		
EAAEVLQNNR	10	Unmodified	_EAAEVLQNNR_			0	0	0	P61081	P61081	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.291276	1142.568	1.2537	0.00071749	0.24722	0.00014148	1.5009	0.00085897	572.291401412594	3.6608	0.16848	3.6608	3.6342	3.8026	0	675	31	0.871889544407995	0.0203411270160542	0.871889544407995	353.437378425788	0	8.24567131569592						224	20	3	NaN	NaN	NaN	2.3117E-10	1	7854	158.61	113.12	1	56494			3659	1326	3110	3177	3659	3659		
EAAFSPGQQDWSR	13	Unmodified	_EAAFSPGQQDWSR_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.836579	1477.65861	1.3593	0.0010057	-0.22734	-0.00016819	1.132	0.00083748	739.836666769213	8.1036	0.12423	8.1036	8.0502	8.1745	0	483	25	1.00151498427745	0.0161315207878521	1.00151498427745	404.883855716823	0	6.52151234649142						258	15	5	NaN	NaN	NaN	6.9093E-05	1	17809	103.69	87.807	1	48256			3660	2819	3111	3178	3660	3660		
EAAGEGPALYEDPPDQK	17	Unmodified	_EAAGEGPALYEDPPDQK_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.910138	1785.80572	2.9237	0.0026135	-0.77282	-0.00069084	2.1509	0.0019227	893.909490811928	7.0481	0.31928	7.0481	6.9328	7.2521	0	339	91	1.09798411722691	0.0601105024598469	1.09798411722691	443.172229656932	0	24.2620134325891						1930	37	5	NaN	NaN	NaN	4.6947E-14	1	26842	144.51	137.99	1	754160			3661	866	3112	3179	3661	3661		
EAAGTTAAAGTGGATEQPPR	20	Unmodified	_EAAGTTAAAGTGGATEQPPR_			0	0	0	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.437386	1812.86022	3.8396	0.0034842	-4.258	-0.0038639	-0.41841	-0.00037968	907.433420513099	3.7849	0.035482	3.7849	3.7672	3.8026	0	342	31	1.09598084995137	0.0200285363602049	1.09598084995137	442.312806078109	0	8.08305922454099						76	5	2	NaN	NaN	NaN	3.5176E-11	1	27549	135.5	109.03	1	14942			3662	194	3113	3180	3662	3662		
EAAIWELEER	10	Unmodified	_EAAIWELEER_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.309135	1244.60372	-0.13792	-8.5965E-05	0.067298	4.1947E-05	-0.070619	-4.4017E-05	623.308912126097	11.953	0.133	11.953	11.908	12.041	0	591	49	0.928742107665821	0.032415189981154	0.928742107665821	376.115402453642	0	13.1272741105864						259	16	2	NaN	NaN	NaN	0.00040417	1	10762	67.881	58.904	1	75995			3663	2866	3114	3181	3663	3663		
EAALSTALSEK	11	Unmodified	_EAALSTALSEK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.298236	1118.58192	1.3215	0.00074044	1.406	0.00078778	2.7275	0.0015282	560.299117948558	6.8441	0.33699	6.8441	6.7644	7.1014	0	633	73	0.900343422309015	0.0487510374716118	0.900343422309015	365.065010059798	0	19.767232751428						891	39	5	NaN	NaN	NaN	5.1229E-05	1	7233	114.39	90.819	1	623460			3664	493	3115	3182	3664	3664		
EAALTSEEVGADLEQVEVLQK	21	Unmodified	_EAALTSEEVGADLEQVEVLQK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1129.57354	2257.13254	1.3811	0.0015601	0.12186	0.00013764	1.503	0.0016977	1130.07447787642	15.437	0.10652	15.437	15.402	15.508	0	93	73	1.26131825079847	0.0475496951673429	1.26131825079847	508.277774444415	0	19.1612649859524						721	13	4	NaN	NaN	NaN	3.4109E-08	1	35247	97.084	90.879	1	193150			3665	1703	3116	3183	3665	3665		
EAALVQQEEEK	11	Unmodified	_EAALVQQEEEK_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.317157	1272.61976	2.6492	0.0016884	-1.4684	-0.00093582	1.1808	0.00075256	637.31629209328	3.9888	0.19511	3.9888	3.9622	4.1573	0	558	34	0.951016745717027	0.0222623031474618	0.951016745717027	385.043000603515	0	9.01345222662803						406	23	4	NaN	NaN	NaN	6.553E-08	1	11567	116.13	76.807	1	87412			3666	1793	3117	3184	3666	3666		
EAAPDAGAEPITADSDPAYSSK	22	Unmodified	_EAAPDAGAEPITADSDPAYSSK_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.98985	2161.96514	2.3432	0.0025353	-0.75324	-0.00081499	1.5899	0.0017203	1082.49046265085	7.6245	0.09753	7.6245	7.589	7.6865	0	159	91	1.21767724410157	0.0596330468528059	1.21767724410157	490.823746865277	0	24.0370062223527						772	12	4	NaN	NaN	NaN	1.8651E-11	1	34198	120.75	118.03	1	176470			3667	2237	3118	3185	3667	3667		
EAASILQELQVETYGSMEK	19	Unmodified	_EAASILQELQVETYGSMEK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.51973	2125.0249	0.63978	0.00068042	1.9304	0.002053	2.5701	0.0027334	1063.52050149498	17.663	0.21279	17.663	17.61	17.823	0	123	79	1.24149774378079	0.0516040383789338	1.24149774378079	500.480883265199	0	20.8029654804594						750	25	5	NaN	NaN	NaN	1.3952E-10	1	33686	122.66	98.733	1	176850			3668	64	3119	3186	3668	3668		
EAATAVEQEK	10	Unmodified	_EAATAVEQEK_			0	0	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.266936	1074.51932	1.4226	0.00076573	-1.3569	-0.00073035	0.06572	3.5375E-05	538.266751275447	2.2862	0.19505	2.2862	2.2597	2.4547	0	714	25	0.845418525735192	0.0163045710776146	0.845418525735192	342.965508670099	0	6.61436358804542						246	23	3	NaN	NaN	NaN	0.010257	1	6059	58.916	40.513	1	53030			3669	455	3120	3187	3669	3669		
EAATLEVERPLPMEVEK	17	Unmodified	_EAATLEVERPLPMEVEK_			0	0	1	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.671436	1939.99248	1.2754	0.00082601	0.0042497	2.7524E-06	1.2796	0.00082877	648.005947119346	10.649	0.16843	10.649	10.596	10.764	0	630	142	0.902373728295776	0.0952660290933974	0.902373728295776	545.992203654741	0	57.6418700224965						1852	20	5	NaN	NaN	NaN	3.5346E-10	1	30516	139.61	116.66	1	737870			3670	1201	3121	3188	3670	3670		
EAATLEVERPLPMEVEK	17	Unmodified	_EAATLEVERPLPMEVEK_			0	0	1	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.003516	1939.99248	2.4933	0.002421	-0.46864	-0.00045505	2.0246	0.0019659	971.504564156395	10.64	0.13299	10.64	10.605	10.738	0	180	43	1.203763835057	0.027844013131697	1.203763835057	485.569761253856	0	11.2316140549838						444	16	5	NaN	NaN	NaN	3.6608E-09	1	30517	108.34	99.97	1	138670			3671	1201	3121	3188	3671	3671		
EAATQAQQTLGSTIDK	16	Unmodified	_EAATQAQQTLGSTIDK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.420673	1660.82679	3.3982	0.0028253	-2.8138	-0.0023395	0.58434	0.00048583	831.418279238136	7.2698	0.17735	7.2698	7.2166	7.394	0	360	64	1.08395544855938	0.0421034272006935	1.08395544855938	437.763512238314	0	17.0037838668939						738	21	5	NaN	NaN	NaN	3.4709E-56	1	23370	285.99	258.4	1	419220			3672	1101	3122	3189	3672	3672		
EAAWAISNLTISGR	14	Unmodified	_EAAWAISNLTISGR_			0	0	0	O00505;O00629	O00505;O00629	O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.893897	1487.77324	1.1148	0.0008304	-1.3059	-0.00097273	-0.19107	-0.00014233	744.89124437909	14.143	0.133	14.143	14.107	14.24	0	438	43	1.03173026378327	0.0281717327026458	1.03173026378327	417.072723987044	0	11.3883073029596						385	16	4	NaN	NaN	NaN	1.1085E-05	1	18176	97.175	88.8	1	133400			3673	96;87	3123	3190	3673	3673		
EAAWAITNATSGGTPEQIR	19	Unmodified	_EAAWAITNATSGGTPEQIR_			0	0	0	O60684;O15131	O60684	O60684	KPNA6;KPNA5	Importin subunit alpha-7;Importin subunit alpha-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.989785	1971.96502	2.3796	0.0023486	-2.9199	-0.0028819	-0.54032	-0.00053329	987.488692361633	11.092	0.097545	11.092	11.057	11.154	0	213	67	1.18187287897418	0.0438390940592615	1.18187287897418	476.684573057852	0	17.681613823832						536	12	4	NaN	NaN	NaN	1.4559E-14	1	31141	151.18	124.71	1	145330			3674	274	3124	3191	3674	3674		
EAAYHPEVAPDVR	13	Unmodified	_EAAYHPEVAPDVR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.240524	1452.69974	0.63601	0.00030862	2.5296	0.0012274	3.1656	0.0015361	485.241512765264	5.3898	0.097535	5.3898	5.3632	5.4608	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	549.75169408872	0	9.84762693702464						176	12	3	NaN	NaN	NaN	0.070101	1	17048	26.579	26.076	1	49519			3675	3406	3125	3192	3675	3675		
EACGVIVELIK	11	Unmodified	_EACGVIVELIK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.841756	1229.66896	1.2511	0.0007705	1.5475	0.000953	2.7986	0.0017235	616.344350407051	13.939	0.23056	13.939	13.841	14.072	0	525	73	0.973257487423603	0.0485286390232953	0.973257487423603	394.195433232643	0	19.655402738918						447	27	2	NaN	NaN	NaN	0.007668	1	10304	59.645	41.309	1	185380			3676	3331	3126	3193	3676	3676		
EACPELDYFVVFSSVSCGR	19	Unmodified	_EACPELDYFVVFSSVSCGR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1111.49827	2220.98199	0.59637	0.00066287	0.38082	0.00042328	0.97719	0.0010861	1112.00042684371	18.887	0.10637	18.887	18.86	18.967	0	117	52	1.24546401832526	0.0337248998180355	1.24546401832526	501.938919357827	0	13.5915927887488						350	13	4	NaN	NaN	NaN	3.9936E-05	1	34895	65.173	64.23	1	69192			3677	1127	3127	3194	3677	3677		
EADASPASAGICR	13	Unmodified	_EADASPASAGICR_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.798608	1303.58266	2.1778	0.0014217	-3.1437	-0.0020522	-0.96584	-0.0006305	652.796520058014	4.2637	0.15961	4.2637	4.2194	4.379	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	384.125726240485	0	9.01115365250087						216	19	3	NaN	NaN	NaN	0.0014023	1	12451	66.664	51.902	1	60474			3678	2772	3128	3195	3678	3678		
EADDIVNWLK	10	Unmodified	_EADDIVNWLK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.806228	1201.5979	0.52388	0.00031527	-0.29351	-0.00017663	0.23037	0.00013864	601.805613657544	14.932	0.39016	14.932	14.808	15.198	0	603	55	0.920633820089869	0.0364974218210178	0.920633820089869	372.978126037336	0	14.7862697404149						1087	45	5	NaN	NaN	NaN	0.00028286	1	9508	108.3	87.028	1	1200100			3679	554	3129	3196	3679	3679		
EADEMHTLLQLECEK	15	Unmodified	_EADEMHTLLQLECEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.950093	1844.82845	-0.96922	-0.00059699	0.74107	0.00045646	-0.22815	-0.00014053	615.950761963067	12.449	0.070913	12.449	12.414	12.485	0	717	22	0.84338031290707	0.0142674906232585	0.84338031290707	510.484238073046	0	8.63587751405208						118	9	3	NaN	NaN	NaN	0.037599	1	28341	52.837	45.631	1	22350			3680	2167	3130	3197	3680	3680		
EADGSETPEPFAAEAK	16	Unmodified	_EADGSETPEPFAAEAK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.870482	1647.72641	2.7647	0.0022805	2.9879	0.0024646	5.7525	0.0047451	824.870049792821	7.456	0.29258	7.456	7.3496	7.6422	0	405	76	1.05384839605172	0.050213057525148	1.05384839605172	425.632529042494	0	20.2802516428902						1664	34	6	NaN	NaN	NaN	1.8104E-12	1	22958	193.34	184.07	1	791830			3681	2108	3131	3198	3681	3681		
EADIDGDGQVNYEEFVQMMTAK	22	Unmodified	_EADIDGDGQVNYEEFVQMMTAK_			0	0	0	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.698162	2489.07266	1.5147	0.0012583	-1.3604	-0.0011301	0.15433	0.0001282	831.031763625941	18.488	0.1242	18.488	18.444	18.568	0	447	34	1.02569221487577	0.0221456308390058	1.02569221487577	619.635098964882	0	13.3784871889947						421	15	6	NaN	NaN	NaN	7.2497E-38	1	36771	225.94	225.89	1	141140			3682	619	3132	3199	3682	3682		
EADIDGDGQVNYEEFVQMMTAK	22	Unmodified	_EADIDGDGQVNYEEFVQMMTAK_			0	0	0	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1245.5436	2489.07266	0.62649	0.00078032	-0.16146	-0.0002011	0.46503	0.00057922	1246.04475194577	18.479	0.079858	18.479	18.452	18.532	0	63	52	1.28111162701928	0.0336418368402702	1.28111162701928	515.95952925416	0	13.5490350202636						366	10	5	NaN	NaN	NaN	2.1035E-08	1	36772	95.677	94.865	1	83057			3683	619	3132	3199	3683	3683		
EADIDGDGQVNYEEFVQMMTAK	22	Oxidation (M)	_EADIDGDGQVNYEEFVQMM(Oxidation (M))TAK_	EADIDGDGQVNYEEFVQM(0.373)M(0.627)TAK	EADIDGDGQVNYEEFVQM(-2.3)M(2.3)TAK	0	1	0	P0DP25;P0DP24;P0DP23	P0DP25	P0DP25			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.0298	2505.06757	0.50924	0.00042574	0.71853	0.00060071	1.2278	0.0010265	836.364449611141	16.679	0.070941	16.679	16.644	16.714	0	450	16	1.02367897599655	0.0100675849391842	1.02367897599655	618.396945623887	0	6.08175406761654						87	9	3	NaN	NaN	NaN	0.019693	1	36848	54.912	54.87	2	16105			3684	619	3132	3200	3684	3684	173	
EADISAFADYRPTEVTDLK	19	Unmodified	_EADISAFADYRPTEVTDLK_			0	0	1	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.351419	2140.03243	0.86144	0.00061537	-0.45925	-0.00032807	0.40219	0.0002873	714.685415408208	13.46	0.15074	13.46	13.389	13.54	0	603	43	0.920633820089869	0.0283829455526903	0.920633820089869	556.671074127507	0	17.1620512335472						597	18	5	NaN	NaN	NaN	3.8269E-05	1	33878	48.363	42.748	1	185100			3685	626	3133	3201	3685	3685		
EADPEDGKPVMDK	13	Unmodified	_EADPEDGKPVMDK_			0	0	1	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.55378	1429.63951	0.97194	0.00046416	1.3325	0.00063634	2.3044	0.0011005	477.554616396783	3.1818	0.11527	3.1818	3.1464	3.2617	0	708	19	0.849494101904619	0.0122250304195799	0.849494101904619	515.296252576727	0	7.41560459186474						171	14	3	NaN	NaN	NaN	0.052296	1	16369	34.193	33.742	1	35145			3686	785	3134	3202	3686	3686		
EADTDVQVCPNYSIPQK	17	Unmodified	_EADTDVQVCPNYSIPQK_			0	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.45693	1962.89931	2.0027	0.0019676	-1.4195	-0.0013946	0.58323	0.000573	982.454992674074	8.9553	0.13303	8.9553	8.9109	9.044	0	258	37	1.15196821829984	0.023954989793705	1.15196821829984	464.638124585617	0	9.66207344560411						330	16	3	NaN	NaN	NaN	8.415E-05	1	30972	66.619	36.551	1	58063			3687	2128	3135	3203	3687	3687		
EAEAAIYHLQLFEELR	16	Unmodified	_EAEAAIYHLQLFEELR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.666902	1930.97888	0.50483	0.00032545	1.1274	0.00072679	1.6322	0.0010522	645.00003382339	16.209	0.61184	16.209	15.916	16.528	0	615	127	0.912521036363781	0.085172601798374	0.912521036363781	552.15023751332	0	51.5364253957338						3415	70	6	NaN	NaN	NaN	9.0748E-09	1	30336	130.71	108.57	1	1308800			3688	699	3136	3204	3688	3688		
EAEAAIYHLQLFEELR	16	Unmodified	_EAEAAIYHLQLFEELR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.496715	1930.97888	1.7495	0.0016909	1.6859	0.0016294	3.4354	0.0033203	966.998237612764	16.218	0.36356	16.218	16.111	16.475	0	168	121	1.21171599086077	0.0795326202009388	1.21171599086077	488.793669208672	0	32.0826344976934						2546	42	6	NaN	NaN	NaN	8.7075E-05	1	30338	80.379	76.529	1	899140			3689	699	3136	3204	3689	3689		
EAEAAIYHLQLFEELRR	17	Unmodified	_EAEAAIYHLQLFEELRR_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	522.777274	2087.07999	-0.65386	-0.00034183	-2.2738	-0.0011887	-2.9277	-0.0015305	523.026674292064	14.489	0.14187	14.489	14.453	14.595	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	663.6066250361	0	16.4590022379195						361	17	5	NaN	NaN	NaN	0.040744	1	33139	13.859	12.588	1	134450			3690	699	3137	3205	3690	3690		
EAEAAIYHLQLFEELRR	17	Unmodified	_EAEAAIYHLQLFEELRR_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.700606	2087.07999	1.4495	0.0010099	-0.10908	-7.5995E-05	1.3404	0.00093387	697.035088296719	14.489	0.36356	14.489	14.435	14.799	0	549	52	0.957085760909907	0.0343815779756202	0.957085760909907	578.806710165849	0	20.7925860473152						1107	42	6	NaN	NaN	NaN	7.4825E-14	1	33141	142.08	132.92	1	1401100			3691	699	3137	3205	3691	3691		
EAEDGIIAYDDCGVK	15	Unmodified	_EAEDGIIAYDDCGVK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.866885	1653.71922	2.6413	0.0021866	-0.69148	-0.00057246	1.9498	0.0016142	827.866547582937	9.2036	0.13303	9.2036	9.1592	9.2923	0	303	34	1.12200181823275	0.0219995616552313	1.12200181823275	453.144928064315	0	8.88500323413751						362	16	4	NaN	NaN	NaN	9.7571E-08	1	23148	99.589	95.606	1	128450			3692	344	3138	3206	3692	3692		
EAEETQSTLQAECDQYR	17	Unmodified	_EAEETQSTLQAECDQYR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.43947	2056.86438	2.3939	0.0024644	-0.37261	-0.00038358	2.0213	0.0020808	1029.43965541427	6.5338	0.079804	6.5338	6.5072	6.587	0	231	43	1.16991841121525	0.0279129335847876	1.16991841121525	471.726818850246	0	11.2548697742542						285	10	4	NaN	NaN	NaN	3.1372E-34	1	32647	174.02	171.3	1	57005			3693	3158	3139	3207	3693	3693		
EAEEVMDAGCQESAGPER	18	Unmodified	_EAEEVMDAGCQESAGPER_			0	0	0	Q99575	Q99575	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.901661	1963.78877	2.2848	0.0022457	-1.8517	-0.0018201	0.43303	0.00042563	982.89977594598	5.8243	0.062047	5.8243	5.7978	5.8598	0	282	31	1.13599383354359	0.0199817200584811	1.13599383354359	458.193515293705	0	8.05945796963607						150	8	3	NaN	NaN	NaN	4.8128E-19	1	30990	153.05	140.36	1	25058			3694	2652	3140	3208	3694	3694		
EAEGAEWLHFASCGEDHTVK	20	Unmodified	_EAEGAEWLHFASCGEDHTVK_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	569.00365	2271.9855	0.33562	0.00019097	-1.1467	-0.00065245	-0.81103	-0.00046148	569.2541226582	10.746	0.079825	10.746	10.711	10.791	0	681	22	0.867820189810857	0.0142457083118959	0.867820189810857	699.385263310107	0	11.4807636140912						179	10	4	NaN	NaN	NaN	0.038267	1	35380	33.5	32.229	1	46921			3695	2035	3141	3209	3695	3695		
EAEGAEWLHFASCGEDHTVK	20	Unmodified	_EAEGAEWLHFASCGEDHTVK_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.335775	2271.9855	1.6281	0.0012347	1.291	0.000979	2.9191	0.0022137	758.336885538095	10.755	0.079825	10.755	10.711	10.791	0	444	25	1.02770517576159	0.01610257649452	1.02770517576159	621.180332665046	0	9.73295071343568						158	10	4	NaN	NaN	NaN	0.018488	1	35381	29.217	28.853	1	31271			3696	2035	3141	3209	3696	3696		
EAEILEVLR	9	Unmodified	_EAEILEVLR_			0	0	0	P36551	P36551	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.305864	1070.59717	0.15759	8.4516E-05	-2.7045	-0.0014504	-2.5469	-0.0013659	536.304402956324	13.859	0.09754	13.859	13.824	13.921	0	696	22	0.857641857947968	0.0142556031742478	0.857641857947968	347.94035268891	0	5.78341594486619						146	12	3	NaN	NaN	NaN	0.0012821	1	5979	72.038	63.856	1	34654			3697	987	3142	3210	3697	3697		
EAELDVNEELDK	12	Unmodified	_EAELDVNEELDK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.330461	1402.64637	1.4742	0.0010354	0.3281	0.00023044	1.8023	0.0012658	702.330482053261	8.5116	0.20396	8.5116	8.4672	8.6712	0	492	37	0.995464410099171	0.0242039733351906	0.995464410099171	402.63738684188	0	9.78982721632497						437	24	4	NaN	NaN	NaN	0.00016676	1	15528	57.293	37.969	1	122990			3698	1060	3143	3211	3698	3698		
EAELGLPFSPLCDR	14	Unmodified	_EAELGLPFSPLCDR_			0	0	0	Q14123;Q01064;P54750	Q14123	Q14123	PDE1C;PDE1B;PDE1A	Calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase 1C;Calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase 1B;Calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.392873	1602.77119	1.0307	0.000827	0.44163	0.00035436	1.4723	0.0011814	802.392886413045	16.005	0.079787	16.005	15.97	16.049	0	408	55	1.0518390438467	0.0361558820177341	1.0518390438467	424.920333130962	0	14.6061980884772						178	10	2	NaN	NaN	NaN	0.0065058	1	21673	42.061	36.033	1	45826			3699	1721	3144	3212	3699	3699		
EAELLEPLMPAIR	13	Unmodified	_EAELLEPLMPAIR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.405252	1480.79595	0.66303	0.00049157	-0.57539	-0.0004266	0.087636	6.4974E-05	741.405511206975	16.644	0.17737	16.644	16.59	16.768	0	462	79	1.01562323939346	0.0523334117742673	1.01562323939346	410.579350257052	0	21.1564853673943						904	21	4	NaN	NaN	NaN	0.00037436	1	17938	85.622	82.951	1	251340			3700	1240	3145	3213	3700	3700		
EAELQAVLHPEFHIQFLGGK	20	Unmodified	_EAELQAVLHPEFHIQFLGGK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.067177	2262.1797	0.49684	0.00037514	-1.3612	-0.0010278	-0.86432	-0.00065262	755.400625593808	16.014	0.097534	16.014	15.978	16.076	0	525	40	0.973257487423603	0.0262663358758335	0.973257487423603	588.285775492628	0	15.8766944716441						361	12	4	NaN	NaN	NaN	1.2522E-07	1	35299	86.135	82.181	1	91003			3701	2466	3146	3214	3701	3701		
EAELQAVLHPEFHIQFLGGK	20	Unmodified	_EAELQAVLHPEFHIQFLGGK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	566.552202	2262.1797	-0.085514	-4.8448E-05	-0.68262	-0.00038674	-0.76813	-0.00043519	566.802615651195	16.014	0.15961	16.014	15.978	16.138	0	645	22	0.892219381832517	0.0142200298311674	0.892219381832517	719.067736413681	0	11.4603704768566						265	19	4	NaN	NaN	NaN	0.030837	1	35300	16.102	14.478	1	73858			3702	2466	3146	3214	3702	3702		
EAEMEEHREHIK	12	Unmodified	_EAEMEEHREHIK_			0	0	1	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.240307	1536.69909	-0.79745	-0.00040928	1.0045	0.00051557	0.20709	0.00010628	513.241044113119	1.7985	0.11526	1.7985	1.763	1.8783	0	819	19	0.773912161060781	0.0122898254393368	0.773912161060781	469.135748785057	0	7.44993650444525						97	14	2	NaN	NaN	NaN	0.00068342	1	19623	54.584	37.931	1	19398			3703	1544	3147	3215	3703	3703		
EAEQMGNELER	11	Unmodified	_EAEQMGNELER_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.290616	1304.56668	1.9981	0.0013053	-0.25363	-0.00016569	1.7445	0.0011396	653.290796038991	4.9376	0.133	4.9376	4.8933	5.0263	0	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	386.579563268974	0	10.6450390722683						251	16	3	NaN	NaN	NaN	2.8919E-05	1	12486	94.804	74.57	1	78542			3704	1782	3148	3216	3704	3704		
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	32	Unmodified	_EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK_			0	0	0	Q3ZCM7	Q3ZCM7	Q3ZCM7	TUBB8	Tubulin beta-8 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	828.638979	3310.52681	1.9102	0.0015829	1.0703	0.00088688	2.9805	0.0024698	828.89087492315	15.916	0.23942	15.916	15.854	16.094	0	354	37	1.08796502040166	0.0240541201161169	1.08796502040166	875.130532804739	0	19.3485034524318						576	28	8	NaN	NaN	NaN	8.4303E-05	1	38552	68.199	0	1	249390			3705	1936	3149	3217	3705	3705		
EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK	32	Unmodified	_EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK_			0	0	0	Q3ZCM7	Q3ZCM7	Q3ZCM7	TUBB8	Tubulin beta-8 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1104.51621	3310.52681	1.5586	0.0017215	1.7326	0.0019137	3.2912	0.0036352	1104.85283088215	15.916	0.16849	15.916	15.872	16.041	0	306	76	1.12000185836644	0.0500196857301183	1.12000185836644	675.675952689816	0	30.1759310098262						1031	20	8	NaN	NaN	NaN	9.5088E-31	1	38553	153.18	0	1	485700			3706	1936	3149	3217	3706	3706		
EAESSPFVER	10	Unmodified	_EAESSPFVER_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.772385	1149.53022	0.9645	0.00055533	2.5792	0.0014851	3.5437	0.0020404	575.773494062883	5.4076	0.28371	5.4076	5.3189	5.6026	0	627	55	0.90440375274676	0.0365480561699901	0.90440375274676	366.591156902081	0	14.8143947359654						597	33	3	NaN	NaN	NaN	3.6856E-07	1	8048	126.82	99.089	1	824290			3707	700	3150	3218	3707	3707		
EAEVVLCGGTESMSQAPYCVR	21	Unmodified	_EAEVVLCGGTESMSQAPYCVR_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1172.02433	2342.0341	0.97184	0.001139	-0.56713	-0.00066469	0.40471	0.00047433	1172.52441286868	11.607	0.053201	11.607	11.589	11.642	0	96	37	1.2593374219024	0.0237683228078447	1.2593374219024	507.366976679325	0	9.57587845324036						148	7	3	NaN	NaN	NaN	7.7029E-11	1	35977	87.727	84.807	1	23912			3708	1056	3151	3219	3708	3708		
EAFAGDDVIRDFLK	14	Unmodified	_EAFAGDDVIRDFLK_			0	0	1	Q9BVJ6	Q9BVJ6	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.606984	1594.79912	-0.90794	-0.00048357	0.03252	1.7321E-05	-0.87542	-0.00046625	532.606966943475	16.209	0.070928	16.209	16.174	16.245	0	699	22	0.85560534332665	0.0142556031742478	0.85560534332665	518.488601266561	0	8.63875828695598						155	9	3	NaN	NaN	NaN	0.0049534	1	21428	33.1	21.745	1	37023			3709	2765	3152	3220	3709	3709		
EAFAIVSVPVSEIR	14	Unmodified	_EAFAIVSVPVSEIR_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.922123	1515.82969	1.2582	0.00095485	-2.0597	-0.0015632	-0.80156	-0.00060832	758.921544926035	15.384	0.1064	15.384	15.34	15.446	0	405	28	1.05384839605172	0.018084171566231	1.05384839605172	425.941215604697	0	7.30920505167825						207	13	3	NaN	NaN	NaN	0.00013922	1	19020	73.655	12.078	1	51956			3710	1758	3153	3221	3710	3710		
EAFCQLLQLMK	11	Unmodified	_EAFCQLLQLMK_			0	0	0	O15357	O15357	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.854341	1379.69413	0.075373	5.2072E-05	0.12144	8.3898E-05	0.19681	0.00013597	690.854094017181	17.885	0.14184	17.885	17.814	17.956	0	501	40	0.98941132619024	0.0262409175570258	0.98941132619024	400.254072326743	0	10.6154375190267						200	17	2	NaN	NaN	NaN	0.004801	1	14805	48.157	43.955	1	47120			3711	167	3154	3222	3711	3711		
EAFEAYTDHATYK	13	Unmodified	_EAFEAYTDHATYK_			0	0	0	O15031	O15031	O15031	PLXNB2	Plexin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.346446	1544.67834	2.1168	0.001637	1.0161	0.00078576	3.1328	0.0024228	773.347407846986	6.658	0.097541	6.658	6.6225	6.72	0	414	31	1.04781950764076	0.0201032305459359	1.04781950764076	423.432887769541	0	8.12388861009913						152	12	3	NaN	NaN	NaN	0.00010161	1	19867	84.309	78.813	1	40078			3712	139	3155	3223	3712	3712		
EAFEELFAQTFSK	13	Unmodified	_EAFEELFAQTFSK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.874839	1545.73512	0.86366	0.00066836	1.9847	0.0015359	2.8484	0.0022043	773.877006134462	17.894	0.1064	17.894	17.823	17.929	0	420	25	1.04379886199097	0.0160870233612731	1.04379886199097	421.805544840031	0	6.50086515788405						205	13	4	NaN	NaN	NaN	3.8736E-05	1	19908	79.889	51.243	1	40105			3713	3048	3156	3224	3713	3713		
EAFEETHLTSLDPVK	15	Unmodified	_EAFEETHLTSLDPVK_			0	0	0	Q9NVS9	Q9NVS9	Q9NVS9	PNPO	Pyridoxine-5-phosphate oxidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.62107	1714.84138	0.73019	0.00041812	-0.0058184	-3.3317E-06	0.72437	0.00041479	572.620810264205	10.773	0.088652	10.773	10.72	10.809	0	645	46	0.892219381832517	0.0304714989453929	0.892219381832517	540.350764638222	0	18.4543152615648						346	11	4	NaN	NaN	NaN	0.00013707	1	24902	71.219	48.321	1	107050			3714	3074	3157	3225	3714	3714		
EAFEETHLTSLDPVK	15	Unmodified	_EAFEETHLTSLDPVK_			0	0	0	Q9NVS9	Q9NVS9	Q9NVS9	PNPO	Pyridoxine-5-phosphate oxidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.427967	1714.84138	2.5738	0.0022094	0.36927	0.00031699	2.9431	0.0025264	858.929552762508	10.773	0.088652	10.773	10.72	10.809	0	291	28	1.12999890578964	0.017989734652339	1.12999890578964	456.239543322394	0	7.26339492916469						193	11	4	NaN	NaN	NaN	0.00025078	1	24903	46.358	44.516	1	37850			3715	3074	3157	3225	3715	3715		
EAFNMIDQNR	10	Unmodified	_EAFNMIDQNR_			0	0	0	P19105;O14950;P24844	P19105	P19105	MYL12A;MYL12B;MYL9	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.285137	1236.55572	1.6715	0.0010351	0.2017	0.00012491	1.8732	0.0011601	619.285464894052	8.0237	0.24843	8.0237	7.9615	8.21	0	603	43	0.920633820089869	0.0283829455526903	0.920633820089869	372.858385473387	0	11.4951449999111						503	29	4	NaN	NaN	NaN	2.329E-07	1	10511	142.04	132.65	1	274250			3716	128	3158	3226	3716	3716		
EAFQLFDR	8	Unmodified	_EAFQLFDR_			0	0	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.256174	1024.49779	-0.98401	-0.00050505	0.16422	8.4287E-05	-0.81979	-0.00042076	513.255549897381	12.024	0.29265	12.024	11.953	12.245	0	726	46	0.837263974740672	0.03057744930274	0.837263974740672	339.867223345028	0	12.4121819462189						688	34	4	NaN	NaN	NaN	0.0004417	1	4848	94.806	80.271	1	265110			3717	1309	3159	3227	3717	3717		
EAFQSVVLPAFEK	13	Unmodified	_EAFQSVVLPAFEK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.890292	1463.76603	0.81424	0.00059675	-2.6697	-0.0019566	-1.8555	-0.0013599	732.888806915382	14.932	0.23056	14.932	14.834	15.065	0	444	28	1.02770517576159	0.0181141482765854	1.02770517576159	415.50839183555	0	7.32367686510588						449	27	4	NaN	NaN	NaN	2.6347E-05	1	17395	117.21	103.93	1	133440			3718	2063	3160	3228	3718	3718		
EAFSDGITSVK	11	Unmodified	_EAFSDGITSVK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.290411	1152.56627	1.5131	0.00087347	1.0603	0.00061209	2.5733	0.0014856	577.29101712486	7.8374	0.15961	7.8374	7.7931	7.9527	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	383.832717826862	0	9.84452593123711						467	19	4	NaN	NaN	NaN	0.00029382	1	8128	72.365	40.413	1	233660			3719	581	3161	3229	3719	3719		
EAFVHVVTLEDMR	13	Unmodified	_EAFVHVVTLEDMR_			0	0	0	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.390133	1544.76571	1.5394	0.0011906	2.8925	0.0022371	4.432	0.0034277	773.393055308454	12.281	0.12417	12.281	12.236	12.361	0	402	28	1.05585747106793	0.0180766890154731	1.05585747106793	426.680876511766	0	7.30494193098951						226	15	3	NaN	NaN	NaN	0.017812	1	19885	44.598	40.07	1	80877			3720	3047	3162	3230	3720	3720		
EAFVVEEWVK	10	Unmodified	_EAFVVEEWVK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.318971	1234.62339	1.0114	0.00062534	-1.7318	-0.0010708	-0.7204	-0.00044544	618.317787778127	14.276	0.22166	14.276	14.214	14.435	0	579	43	0.936845902828289	0.028347578802108	0.936845902828289	379.430873190403	0	11.4810200324792						365	26	3	NaN	NaN	NaN	0.0088771	1	10462	33.426	27.163	1	68431			3721	973	3163	3231	3721	3721		
EAGAGGLAIAVEGPSK	16	Unmodified	_EAGAGGLAIAVEGPSK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.880456	1425.74636	1.0724	0.00076553	-1.9306	-0.0013782	-0.85821	-0.00061266	713.879437388728	9.4253	0.15961	9.4253	9.3632	9.5228	0	486	52	0.999498404980629	0.0342723855002213	0.999498404980629	404.205081932408	0	13.8600245083978						347	19	3	NaN	NaN	NaN	4.9224E-12	1	16258	130.65	116.2	1	111260			3722	792	3164	3232	3722	3722		
EAGDVCYADVQK	12	Unmodified	_EAGDVCYADVQK_			0	0	0	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.800817	1353.58708	2.8237	0.0019139	-7.0499	-0.0047784	-4.2262	-0.0028645	677.799014094317	5.0972	0.28377	5.0972	5.0085	5.2923	0	537	49	0.965173861991602	0.0323434604594182	0.965173861991602	390.523840552141	0	13.0866498697912						804	33	6	NaN	NaN	NaN	0.0077888	1	13994	64.064	58.198	1	424160			3723	1644	3165	3233	3723	3723		
EAGDVCYADVYR	12	Unmodified	_EAGDVCYADVYR_			0	0	0	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.306266	1416.59798	2.4344	0.0017267	-0.24621	-0.00017464	2.1881	0.0015521	709.306557498206	7.802	0.30154	7.802	7.7487	8.0502	0	507	64	0.985374541851584	0.0423833273901605	0.985374541851584	398.517997836608	0	17.1412169239138						1317	35	5	NaN	NaN	NaN	1.7058E-08	1	15981	118.91	93.052	1	950840			3724	1572	3166	3234	3724	3724		
EAGEDEEGFLSK	12	Unmodified	_EAGEDEEGFLSK_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.790972	1309.56739	0.97077	0.00063662	4.2442	0.0027833	5.2149	0.0034199	655.794851814668	7.0214	0.14196	7.0214	6.9771	7.1191	0	549	28	0.957085760909907	0.0182045269808345	0.957085760909907	387.382778645766	0	7.36832636509297						211	17	2	NaN	NaN	NaN	0.017773	1	12630	44.598	34.51	1	53097			3725	2520	3167	3235	3725	3725		
EAGELKPEEEITVGPVQK	18	Unmodified	_EAGELKPEEEITVGPVQK_			0	0	1	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.012395	1952.01024	2.0639	0.0020164	-0.67049	-0.00065508	1.3934	0.0013613	977.512768726762	8.7156	0.088954	8.7156	8.68	8.769	0	219	43	1.17788915118882	0.0278975958316861	1.17788915118882	475.111751556126	0	11.2527359696111						262	11	4	NaN	NaN	NaN	0.00064691	1	30755	58.508	53.692	1	50349			3726	1240	3168	3236	3726	3726		
EAGELKPEEEITVGPVQK	18	Unmodified	_EAGELKPEEEITVGPVQK_			0	0	1	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.677355	1952.01024	1.2631	0.00082315	0.34719	0.00022625	1.6103	0.0010494	652.012208419149	8.7156	0.13321	8.7156	8.6712	8.8044	0	594	91	0.926715457081489	0.06080379541605	0.926715457081489	560.695966968878	0	36.7884690016366						633	16	5	NaN	NaN	NaN	8.8176E-08	1	30756	119.79	116.5	1	221970			3727	1240	3168	3236	3727	3727		
EAGEQGDIEPR	11	Unmodified	_EAGEQGDIEPR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.778199	1199.54184	2.2144	0.0013303	-0.41774	-0.00025097	1.7966	0.0010794	600.777792983034	3.2351	0.33707	3.2351	3.1286	3.4657	0	594	37	0.926715457081489	0.0243147574808095	0.926715457081489	375.449297824381	0	9.85087553378025						769	39	4	NaN	NaN	NaN	0.00051538	1	9438	107.08	99.928	1	281400			3728	1649	3169	3237	3728	3728		
EAGICYASIAMATDYDCWK	19	Unmodified	_EAGICYASIAMATDYDCWK_			0	0	0	Q13126	Q13126	Q13126	MTAP	S-methyl-5-thioadenosine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1112.97103	2223.92751	0.18482	0.0002057	1.2774	0.0014217	1.4622	0.0016274	1112.9728771259	16.315	0.062081	16.315	16.289	16.351	0	105	25	1.25339330680955	0.0158542324732085	1.25339330680955	505.130368270028	0	6.38941842462481						148	8	4	NaN	NaN	NaN	0.0025326	1	34928	49.097	46.856	1	22416			3729	1630	3170	3238	3729	3729		
EAGLAHLCEFIEDCEHTVLATK	22	Unmodified	_EAGLAHLCEFIEDCEHTVLATK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.401679	2542.18321	0.78564	0.00066654	1.1046	0.00093719	1.8903	0.0016037	848.736584181245	17.583	0.11525	17.583	17.548	17.663	0	396	31	1.05987478976334	0.0200838253150546	1.05987478976334	640.211001565046	0	12.131514065996						239	14	4	NaN	NaN	NaN	0.00052719	1	36998	65.724	63.876	1	51663			3730	3173	3171	3239	3730	3730		
EAGLAPVPMIIFAK	14	Unmodified	_EAGLAPVPMIIFAK_			0	0	0	P06132	P06132	P06132	UROD	Uroporphyrinogen decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.915255	1455.81596	0.43673	0.00031834	-0.48678	-0.00035482	-0.050051	-3.6483E-05	728.915680117616	17.92	0.11525	17.92	17.876	17.991	0	447	64	1.02569221487577	0.0422546944183948	1.02569221487577	414.715733609754	0	17.084741738342						565	14	4	NaN	NaN	NaN	0.053739	1	17137	48.785	44.803	1	148810			3731	537	3172	3240	3731	3731		
EAGMQPQLQIR	11	Unmodified	_EAGMQPQLQIR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.832254	1269.64996	1.7082	0.0010861	-0.23288	-0.00014807	1.4753	0.00093807	635.831929271369	8.0414	0.22179	8.0414	7.935	8.1567	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	384.233352440833	0	9.01367844103265						517	26	3	NaN	NaN	NaN	0.00076914	1	11503	93.467	71.081	1	229000			3732	3410	3173	3241	3732	3732		
EAGVEMGDEDDLSTPNEK	18	Unmodified	_EAGVEMGDEDDLSTPNEK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.409842	1934.80513	3.8745	0.0037521	-2.414	-0.0023378	1.4605	0.0014143	968.407826914854	7.7398	0.20404	7.7398	7.6688	7.8729	0	282	88	1.13599383354359	0.0579350823400258	1.13599383354359	458.241683200325	0	23.3700825338364						884	24	5	NaN	NaN	NaN	9.0429E-08	1	30410	113.86	108.47	1	220310			3733	705	3174	3242	3733	3733		
EAHLPPGAMAAVGLSWEECK	20	Unmodified	_EAHLPPGAMAAVGLSWEECK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.343325	2152.00815	2.1095	0.0015154	0.71973	0.00051701	2.8293	0.0020324	718.678133147131	13.531	0.28376	13.531	13.469	13.753	0	402	28	1.05585747106793	0.0180816768665149	1.05585747106793	638.412604943184	0	10.9328870102298						433	33	4	NaN	NaN	NaN	9.9565E-06	1	34056	52.201	49.486	1	107860			3734	1127	3175	3243	3734	3734		
EAHQLFLEPEVLDPESVELK	20	Unmodified	_EAHQLFLEPEVLDPESVELK_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.733641	2321.17909	0.69515	0.00053855	-2.3452	-0.0018169	-1.6501	-0.0012784	775.066238518449	16.103	0.097533	16.103	16.049	16.147	0	576	52	0.938871150116794	0.0344244475580081	0.938871150116794	567.412950509678	0	20.8046411439155						451	12	4	NaN	NaN	NaN	1.8329E-07	1	35828	75.969	74.874	1	109810			3735	1013	3176	3244	3735	3735		
EAHQLFLEPEVLDPESVELK	20	Unmodified	_EAHQLFLEPEVLDPESVELK_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.59682	2321.17909	0.39491	0.00045873	-1.0404	-0.0012085	-0.64547	-0.00074977	1162.09751733987	16.103	0.11526	16.103	16.032	16.147	0	63	46	1.28111162701928	0.0296839714567931	1.28111162701928	516.166816741485	0	11.9598329544062						298	14	3	NaN	NaN	NaN	0.024182	1	35829	21.21	11.298	1	67950			3736	1013	3176	3244	3736	3736		
EAHQLFLEPEVLDPESVELK	20	Unmodified	_EAHQLFLEPEVLDPESVELK_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.733641	2321.17909	1.3547	0.0010495	-0.74583	-0.00057782	0.60888	0.00047172	775.067524284196	16.103	0.22169	16.103	16.014	16.236	0	483	73	1.00151498427745	0.0484347476913899	1.00151498427745	605.272157660489	0	29.2718578365149						1236	26	6	NaN	NaN	NaN	6.8543E-08	1	35830	159.75	139.46	1	791420			3737	1013	3176	3244	3737	3737		
EAIDSPVSFLALHNQIR	17	Unmodified	_EAIDSPVSFLALHNQIR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.34253	1909.00576	0.38418	0.00024486	-0.88244	-0.00056242	-0.49826	-0.00031756	637.342054746062	14.719	0.15967	14.719	14.631	14.79	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	575.490522407898	0	12.2443916818653						403	19	4	NaN	NaN	NaN	0.0001255	1	29825	66.953	62.137	1	134100			3738	2442	3177	3245	3738	3738		
EAIDSYIK	8	Unmodified	_EAIDSYIK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.745108	937.475663	-0.024247	-1.139E-05	-0.35477	-0.00016665	-0.37901	-0.00017804	469.744818296783	7.2787	0.17734	7.2787	7.2343	7.4117	0	714	37	0.845418525735192	0.0244636567629751	0.845418525735192	343.599326834363	0	9.94264466626805						332	21	3	NaN	NaN	NaN	0.068587	1	3025	27.736	4.4271	1	85393			3739	1503	3178	3246	3739	3739		
EAIEGTYIDK	10	Unmodified	_EAIEGTYIDK_			0	0	0	P62280	P62280	P62280	RPS11	40S ribosomal protein S11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.784961	1137.55537	1.3684	0.00077969	0.36914	0.00021033	1.7375	0.00099002	569.785352317865	6.2855	0.47887	6.2855	6.1879	6.6668	0	645	46	0.892219381832517	0.030475726379646	0.892219381832517	361.697475805935	0	12.3545772814645						850	55	3	NaN	NaN	NaN	0.00017016	1	7734	112.8	91.527	1	1292600			3740	1380	3179	3247	3740	3740		
EAIENATTNAEVLR	14	Unmodified	_EAIENATTNAEVLR_			0	0	0	Q9BY43	Q9BY43	Q9BY43	CHMP4A	Charged multivesicular body protein 4a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.891552	1529.76855	2.1672	0.0016599	-0.95009	-0.00072767	1.2172	0.00093221	765.891179868102	7.935	0.11529	7.935	7.8995	8.0148	0	432	43	1.035754240522	0.0281600678501546	1.035754240522	418.593453284883	0	11.3807113550335						248	14	3	NaN	NaN	NaN	0.0002174	1	19431	68.108	49.297	1	87461			3741	2795	3180	3248	3741	3741		
EAIESAIGGNAYQHSK	16	Unmodified	_EAIESAIGGNAYQHSK_			0	0	0	P63172	P63172	P63172	DYNLT1	Dynein light chain Tctex-type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.907733	1673.80091	3.0265	0.0025359	-1.487	-0.001246	1.5395	0.0012899	837.906619496269	5.9663	0.11533	5.9663	5.9307	6.0461	0	222	52	1.17589687683038	0.0338872942601851	1.17589687683038	474.864282815644	0	13.6847592697082						421	14	4	NaN	NaN	NaN	2.8614E-12	1	23733	184.65	153.23	1	121210			3742	1430	3181	3249	3742	3742		
EAIGAVIHYLLQVGSEK	17	Unmodified	_EAIGAVIHYLLQVGSEK_			0	0	0	Q9UBB6	Q9UBB6	Q9UBB6	NCDN	Neurochondrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.004176	1825.9938	0.3709	0.000339	0.79922	0.00073049	1.1701	0.0010695	914.506147904578	19.587	0.035455	19.587	19.57	19.605	0	150	16	1.22363604450103	0.00992997205694301	1.22363604450103	493.804537189019	0	4.00729063017923						46	5	2	NaN	NaN	NaN	0.042996	1	27883	26.517	25.778	1	8849			3743	3168	3182	3250	3743	3743		
EAIHALSSSEDGGHIFCTLESLK	23	Unmodified	_EAIHALSSSEDGGHIFCTLESLK_			0	0	0	Q9Y4R8	Q9Y4R8	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.404077	2500.1904	1.8086	0.0015091	0.27616	0.00023043	2.0848	0.0017396	834.738611277719	13.832	0.070935	13.832	13.797	13.868	0	480	28	1.00353128488872	0.0181467072344021	1.00353128488872	606.232398341323	0	10.9624104543282						187	9	5	NaN	NaN	NaN	0.0024409	1	36825	13.062	12.309	1	35577			3744	3414	3183	3251	3744	3744		
EAIHSQLLEK	10	Unmodified	_EAIHSQLLEK_			0	0	0	O60925	O60925	O60925	PFDN1	Prefoldin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.322045	1166.62954	1.9055	0.0011134	0.027407	1.6015E-05	1.9329	0.0011295	584.322061066681	4.9021	0.15073	4.9021	4.8578	5.0085	0	561	49	0.948993180460448	0.0323882634734276	0.948993180460448	384.598214531838	0	13.1259829471305						289	18	3	NaN	NaN	NaN	3.9606E-11	1	8520	175.07	105.35	1	96510			3745	294	3184	3252	3745	3745		
EAILAIHK	8	Unmodified	_EAILAIHK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.774003	893.533452	-0.074563	-3.3387E-05	0.033383	1.4948E-05	-0.04118	-1.8439E-05	447.774260835046	5.3012	0.26604	5.3012	5.2657	5.5317	0	741	31	0.827064408645228	0.020406225036543	0.827064408645228	336.378444926519	0	8.29949176008779						491	31	4	NaN	NaN	NaN	0.055113	1	2236	33.813	17.265	1	322580			3746	221	3185	3253	3746	3746		
EAILDIITSR	10	Unmodified	_EAILDIITSR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.824421	1129.63429	0.29146	0.00016491	-1.2484	-0.00070636	-0.95691	-0.00054144	565.823702559291	15.163	0.18622	15.163	15.101	15.287	0	657	49	0.884090832094921	0.0325187199489114	0.884090832094921	358.432337535222	0	13.1838951177928						638	22	4	NaN	NaN	NaN	0.00031818	1	7527	107.08	76.485	1	378280			3747	573	3186	3254	3747	3747		
EAILEYILHQK	11	Unmodified	_EAILEYILHQK_			0	0	0	Q9Y314	Q9Y314	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.922244	1355.7449	-2.0684	-0.00093682	0.51668	0.00023402	-1.5517	-0.0007028	452.922452873447	15.18	0.097538	15.18	15.136	15.234	0	807	22	0.782101955086014	0.0143271514943355	0.782101955086014	474.664066361799	0	8.69526529560324						132	12	3	NaN	NaN	NaN	0.026823	1	14070	17.47	16.213	1	32104			3748	3363	3187	3255	3748	3748		
EAILEYILHQK	11	Unmodified	_EAILEYILHQK_			0	0	0	Q9Y314	Q9Y314	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.879727	1355.7449	1.0698	0.00072629	1.3757	0.00093391	2.4455	0.0016602	678.880372735871	15.171	0.14189	15.171	15.101	15.242	-1.7764E-15	459	40	1.01763759082241	0.0261829569110703	1.01763759082241	411.744793601233	0	10.593846263586						337	17	5	NaN	NaN	NaN	0.00067016	1	14071	88.181	74.907	1	89715			3749	3363	3187	3255	3749	3749		
EAILNDEIYCPPETAVLLASYAVQAK	26	Unmodified	_EAILNDEIYCPPETAVLLASYAVQAK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	960.15628	2877.44701	0.89345	0.00085785	1.9398	0.0018625	2.8333	0.0027204	960.492749889965	19.924	0.079814	19.924	19.889	19.969	0	207	34	1.18585551256002	0.0219059920358284	1.18585551256002	715.854935001537	0	13.223796945632						139	10	5	NaN	NaN	NaN	0.011044	1	38043	54.418	52.874	1	22044			3750	962	3188	3256	3750	3750		
EAINLLEPMTNDPVNYVR	18	Unmodified	_EAINLLEPMTNDPVNYVR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.52515	2087.03574	1.3986	0.0014608	-1.3279	-0.001387	0.070649	7.3795E-05	1045.02613659566	16.635	0.2926	16.635	16.528	16.821	0	168	82	1.21171599086077	0.0536586861774084	1.21171599086077	488.532804553237	0	21.6338058130846						1254	34	5	NaN	NaN	NaN	0.00077799	1	33134	79.795	65.936	1	404860			3751	2641	3189	3257	3751	3751		
EAINLLEPMTNDPVNYVR	18	Oxidation (M)	_EAINLLEPM(Oxidation (M))TNDPVNYVR_	EAINLLEPM(1)TNDPVNYVR	EAINLLEPM(43)TNDPVNYVR	0	1	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.5226	2103.03065	2.4673	0.0025969	-1.5581	-0.0016399	0.90921	0.00095697	1053.02245932124	14.471	0.10642	14.471	14.418	14.524	0	162	37	1.21569043230068	0.0238401103088965	1.21569043230068	490.11055761524	0	9.61123773507848						218	13	3	NaN	NaN	NaN	0.041822	1	33358	42.941	41.466	1	38583			3752	2641	3189	3258	3752	3752	610	
EAINVEQAFQTIAR	14	Unmodified	_EAINVEQAFQTIAR_			0	0	0	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.417736	1588.82092	1.1499	0.00091464	0.90471	0.00071962	2.0546	0.0016343	795.418729524505	15.677	0.21283	15.677	15.624	15.837	0	387	52	1.06589869032374	0.0341354478713756	1.06589869032374	430.632516486827	0	13.7910234356238						671	25	5	NaN	NaN	NaN	6.863E-55	1	21254	326.21	284.41	1	547370			3753	1180	3190	3259	3753	3753		
EAIQCVDNNQSVLVSAHTSAGK	22	Unmodified	_EAIQCVDNNQSVLVSAHTSAGK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.713134	2327.11757	1.983	0.0015402	0.32263	0.00025059	2.3056	0.0017908	777.048013451328	7.4294	0.12421	7.4294	7.4028	7.527	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	619.874414483725	0	17.0349194846663						376	15	5	NaN	NaN	NaN	8.0621E-12	1	35871	113.66	98.707	1	98346			3754	1047	3191	3260	3754	3754		
EAIQQQQNQLVWVSEGK	17	Unmodified	_EAIQQQQNQLVWVSEGK_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.007978	1984.0014	2.3708	0.0023542	-2.0794	-0.0020648	0.29145	0.00028941	993.507539334394	10.862	0.079791	10.862	10.826	10.906	0	231	31	1.16991841121525	0.0199323285473259	1.16991841121525	471.842968565904	0	8.03896150538549						216	10	4	NaN	NaN	NaN	1.0867E-14	1	31353	120.75	109.07	1	51145			3755	1568	3192	3261	3755	3755		
EAISDLQQLWK	11	Unmodified	_EAISDLQQLWK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.853709	1329.69287	-0.0042574	-2.8348E-06	0.72434	0.0004823	0.72008	0.00047947	665.854818708368	14.879	0.14187	14.879	14.826	14.967	0	510	46	0.983355730988811	0.0302947379404193	0.983355730988811	397.952729738302	0	12.2599312539457						370	17	4	NaN	NaN	NaN	1.5464E-06	1	13285	134.66	108.8	1	106930			3756	383	3193	3262	3756	3756		
EAITHLLGVALTR	13	Unmodified	_EAITHLLGVALTR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.411726	1392.8089	1.0855	0.00075707	1.5304	0.0010673	2.616	0.0018244	697.412723604934	14.028	0.11522	14.028	13.974	14.09	0	438	34	1.03173026378327	0.0221364589535984	1.03173026378327	417.334674299971	0	8.95419298226119						273	14	4	NaN	NaN	NaN	6.8164E-07	1	15253	115.04	104.79	1	91331			3757	1794	3194	3263	3757	3757		
EAIVTSEELGQDLEHVEVLQK	21	Unmodified	_EAIVTSEELGQDLEHVEVLQK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.407705	2365.20129	1.5146	0.0011956	-0.26801	-0.00021157	1.2466	0.00098406	789.741878505712	15.26	0.19505	15.26	15.216	15.411	0	423	70	1.04178812298108	0.0462725673193705	1.04178812298108	629.541796209456	0	27.962034220646						656	23	6	NaN	NaN	NaN	1.5168E-11	1	36180	115.24	101.89	1	216400			3758	1703	3195	3264	3758	3758		
EALDVLGAVLK	11	Unmodified	_EALDVLGAVLK_			0	0	0	Q92552	Q92552	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.337164	1126.65977	-0.012715	-7.1756E-06	-2.9478	-0.0016635	-2.9605	-0.0016707	564.335366975435	16.555	0.1596	16.555	16.502	16.661	0	627	88	0.90440375274676	0.0588299712043652	0.90440375274676	366.679377879027	0	23.8518882482987						647	19	4	NaN	NaN	NaN	0.0025695	1	7448	88.181	47.156	1	200840			3759	2412	3196	3265	3759	3759		
EALEALVPVTIEVEVPFDLHR	21	Unmodified	_EALEALVPVTIEVEVPFDLHR_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	792.765164	2375.27366	0.6142	0.00048691	0.78257	0.00062039	1.3968	0.0011073	793.100608155586	19.703	0.035476	19.703	19.685	19.72	0	453	28	1.02166545906632	0.0181241570782431	1.02166545906632	617.366590779308	0	10.9519696167171						109	5	4	NaN	NaN	NaN	9.5439E-06	1	36237	63.79	62.454	1	20417			3760	1498	3197	3266	3760	3760		
EALEHLCTYEK	11	Unmodified	_EALEHLCTYEK_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.826834	1391.63912	2.3326	0.0016254	0.56351	0.00039267	2.8961	0.0020181	696.827476509263	5.7445	0.25714	5.7445	5.6647	5.9219	0	474	40	1.00756305028564	0.0262010489671465	1.00756305028564	407.562413005244	0	10.5984064593192						533	30	5	NaN	NaN	NaN	1.8484E-07	1	15186	118.91	77.112	1	181930			3761	2785	3198	3267	3761	3761		
EALENCITLQDFNR	14	Unmodified	_EALENCITLQDFNR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.909418	1721.80428	3.1304	0.0026981	0.27773	0.00023938	3.4081	0.0029375	861.909449771333	12.813	0.14189	12.813	12.751	12.893	0	330	40	1.10399226369747	0.0260317206932301	1.10399226369747	445.724851661424	0	10.5100236894969						382	17	4	NaN	NaN	NaN	1.1085E-05	1	25098	97.175	80.887	1	83717			3762	2687	3199	3268	3762	3762		
EALEPSGENVIQNK	14	Unmodified	_EALEPSGENVIQNK_			0	0	0	O75477	O75477	O75477	ERLIN1	Erlin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.386102	1526.75765	2.5967	0.0019849	-0.088859	-6.7923E-05	2.5079	0.001917	765.388498937138	6.8619	0.15959	6.8619	6.8087	6.9683	0	429	85	1.03776581230406	0.0563279501059264	1.03776581230406	419.413831329026	0	22.764983279209						1012	19	6	NaN	NaN	NaN	1.2867E-07	1	19322	125.17	68.139	1	311560			3763	337	3200	3269	3763	3763		
EALGDAQQSVR	11	Unmodified	_EALGDAQQSVR_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.296559	1172.57856	2.5262	0.0014836	-3.5146	-0.0020641	-0.98833	-0.00058045	587.294481482218	4.0154	0.29263	4.0154	3.9356	4.2283	0	606	37	0.918606045818476	0.0243383549190614	0.918606045818476	372.26117346266	0	9.86301429602275						507	34	4	NaN	NaN	NaN	0.00085299	1	8667	81.099	60.865	1	164920			3764	2658	3201	3270	3764	3764		
EALGIPAAASFK	12	Unmodified	_EALGIPAAASFK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.826963	1173.63937	0.36776	0.00021618	-3.7925	-0.0022293	-3.4248	-0.0020132	587.825701384775	11.669	0.19514	11.669	11.545	11.74	0	615	70	0.912521036363781	0.0466647041412755	0.912521036363781	369.791364297788	0	18.9104732069712						751	23	4	NaN	NaN	NaN	0.018915	1	8706	56.202	41.667	1	180360			3765	929	3202	3271	3765	3765		
EALGLGPPAAQLTPPPAPVGLR	22	Unmodified	_EALGLGPPAAQLTPPPAPVGLR_			0	0	0	Q8IY67	Q8IY67	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.60459	2121.19462	0.39605	0.00042045	1.1023	0.0011702	1.4984	0.0015907	1062.10759228245	15.322	0.20391	15.322	15.242	15.446	1.7764E-15	117	40	1.24546401832526	0.025779022857559	1.24546401832526	502.085683996361	0	10.3923342093814						452	24	4	NaN	NaN	NaN	0.010446	1	33640	28.263	25.874	1	89824			3766	2219	3203	3272	3766	3766		
EALLELLR	8	Unmodified	_EALLELLR_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.792392	955.570232	-0.73176	-0.00035036	-1.4047	-0.00067255	-2.1364	-0.0010229	478.791784073923	15.322	0.15961	15.322	15.269	15.429	0	693	43	0.85967808974117	0.0285131915088889	0.85967808974117	349.299183170727	0	11.5853068985904						283	19	3	NaN	NaN	NaN	0.002729	1	3348	58.286	26.158	1	79471			3767	1709	3204	3273	3767	3767		
EALLGVQEDVDEYVK	15	Unmodified	_EALLGVQEDVDEYVK_			0	0	0	Q14257	Q14257	Q14257	RCN2	Reticulocalbin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.9278	1705.84105	2.1547	0.00184	1.942	0.0016584	4.0968	0.0034983	853.929786598811	14.232	0.19506	14.232	14.187	14.382	0	273	43	1.14198628764525	0.0279628687340265	1.14198628764525	461.098974298402	0	11.2905472081342						539	23	4	NaN	NaN	NaN	3.4785E-08	1	24654	104.04	101.37	1	168280			3768	1744	3205	3274	3768	3768		
EALLLLSWK	9	Unmodified	_EALLLLSWK_			0	0	0	Q86TI2	Q86TI2	Q86TI2	DPP9	Dipeptidyl peptidase 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.823692	1071.63283	-1.0563	-0.00056703	-0.93685	-0.00050293	-1.9931	-0.00107	536.823139452791	16.927	0.10642	16.927	16.892	16.998	0	648	28	0.890187667287968	0.0182854326605286	0.890187667287968	361.139558233908	0	7.41820327982924						170	13	3	NaN	NaN	NaN	0.029234	1	6004	28.096	20.45	1	34252			3769	2158	3206	3275	3769	3769		
EALLSSAVDHGSDEVK	16	Unmodified	_EALLSSAVDHGSDEVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.907399	1655.80024	3.3104	0.002744	-1.2461	-0.0010329	2.0643	0.0017111	828.907420195826	7.6156	0.30159	7.6156	7.5624	7.864	0	291	109	1.12999890578964	0.0720432811696607	1.12999890578964	456.369962876512	0	29.0959481327328						1579	35	5	NaN	NaN	NaN	1.5912E-17	1	23216	180.17	149.82	1	1103100			3770	1461	3207	3276	3770	3770		
EALLSSAVDHGSDEVK	16	Unmodified	_EALLSSAVDHGSDEVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.940691	1655.80024	0.87455	0.00048358	1.3183	0.00072892	2.1928	0.0012125	552.941600379468	7.6068	0.25722	7.6068	7.5003	7.7576	-8.8818E-16	645	46	0.892219381832517	0.030475726379646	0.892219381832517	540.505032064706	0	18.4621448484941						767	30	6	NaN	NaN	NaN	1.7548E-06	1	23217	102.03	75.45	1	574110			3771	1461	3207	3276	3771	3771		
EALNLAQMQEQTLQLEQQSK	20	Unmodified	_EALNLAQMQEQTLQLEQQSK_			0	0	0	Q5T9A4	Q5T9A4	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.58646	2329.15837	0.11354	0.00013234	1.1298	0.0013169	1.2434	0.0014493	1166.09019084246	14.648	0.035479	14.648	14.631	14.666	0	63	10	1.28111162701928	0.00593354277393976	1.28111162701928	516.156284919082	0	2.39060775814755						19	5	2	NaN	NaN	NaN	0.0001918	1	35891	38.668	37.574	1	3178.7			3772	1996	3208	3277	3772	3772		
EALNVINTHTK	11	Unmodified	_EALNVINTHTK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.338227	1238.6619	2.4102	0.0014952	-1.3415	-0.00083216	1.0688	0.00066301	620.337490914601	4.9908	0.12411	4.9908	4.9642	5.0883	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.79990563543	0	7.36151530841084						175	15	3	NaN	NaN	NaN	0.0029893	1	10581	59.645	41.243	1	46247			3773	383	3209	3278	3773	3773		
EALPGSGQAR	10	Unmodified	_EALPGSGQAR_			0	0	0	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.256705	984.498858	-0.47012	-0.00023189	-0.37122	-0.00018311	-0.84133	-0.00041499	493.256498569979	3.0843	0.14186	3.0843	3.0222	3.1641	0	795	34	0.790287188799094	0.0225015628542545	0.790287188799094	320.970845045208	0	9.13888741527353						190	17	2	NaN	NaN	NaN	0.072387	1	3926	17.47	12.162	1	37379			3774	2560	3210	3279	3774	3774		
EALQDVEDENQ	11	Unmodified	_EALQDVEDENQ_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.278229	1288.5419	1.759	0.001135	0.77238	0.0004984	2.5314	0.0016334	645.278733792963	6.587	0.19507	6.587	6.5249	6.72	0	558	58	0.951016745717027	0.0384424338892226	0.951016745717027	384.99190895183	0	15.56231903846						617	23	5	NaN	NaN	NaN	2.5508E-11	1	12008	167.06	145.79	1	474250			3775	1375	3211	3280	3775	3775		
EALQLMATYLPK	12	Unmodified	_EALQLMATYLPK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.375963	1376.73737	1.6528	0.0011394	-1.1689	-0.00080582	0.48385	0.00033355	689.375577156915	15.491	0.18635	15.491	15.402	15.588	0	432	61	1.035754240522	0.0402175744908813	1.035754240522	419.010456295262	0	16.2698674832555						899	22	4	NaN	NaN	NaN	0.00042472	1	14713	77.358	54.461	1	214450			3776	2641	3212	3281	3776	3776		
EALQQQHSVQVDQLR	15	Unmodified	_EALQQQHSVQVDQLR_			0	0	0	Q9Y6K9	Q9Y6K9	Q9Y6K9	IKBKG	NF-kappa-B essential modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.960831	1777.90711	2.9695	0.0026427	-2.9025	-0.0025831	0.066979	5.9609E-05	889.958160106977	6.0638	0.053208	6.0638	6.0372	6.0904	0	306	31	1.12000185836644	0.0200037307887677	1.12000185836644	452.074589437644	0	8.07425301663608						110	7	3	NaN	NaN	NaN	0.0022317	1	26623	45.183	41.447	1	20194			3777	3469	3213	3282	3777	3777		
EALQQQHSVQVDQLR	15	Unmodified	_EALQQQHSVQVDQLR_			0	0	0	Q9Y6K9	Q9Y6K9	Q9Y6K9	IKBKG	NF-kappa-B essential modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.64298	1777.90711	0.20694	0.00012285	0.61667	0.00036608	0.82361	0.00048893	593.977769844152	6.0638	0.035481	6.0638	6.0461	6.0815	0	714	31	0.845418525735192	0.0203778832072955	0.845418525735192	511.861491497402	0	12.3378579656454						100	5	3	NaN	NaN	NaN	0.03633	1	26624	32.051	25.304	1	18286			3778	3469	3213	3282	3778	3778		
EALQYFYFLR	10	Unmodified	_EALQYFYFLR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.348063	1348.68157	0.10054	6.7896E-05	0.70243	0.00047439	0.80297	0.00054228	675.348566168809	17.317	0.1685	17.317	17.255	17.424	0	510	37	0.983355730988811	0.0242307604673273	0.983355730988811	397.895094806615	0	9.80448929065454						485	20	5	NaN	NaN	NaN	0.00099869	1	13857	49.96	25.139	1	219920			3779	2239	3214	3283	3779	3779		
EALTYDGALLGDR	13	Unmodified	_EALTYDGALLGDR_			0	0	0	Q15056	Q15056	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.351531	1392.68851	1.6936	0.001181	1.3347	0.00093073	3.0283	0.0021118	697.352611625555	11.438	0.28386	11.438	11.323	11.607	0	471	73	1.00957851518677	0.0483678491826525	1.00957851518677	408.374644461083	0	19.5648014653509						1090	33	5	NaN	NaN	NaN	1.9091E-07	1	15234	153.33	125.24	1	814620			3780	1804	3215	3284	3780	3780		
EALVDTLTGILSPVQEVR	18	Unmodified	_EALVDTLTGILSPVQEVR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.53858	1939.06261	1.949	0.0018916	-1.0051	-0.00097548	0.94394	0.00091613	971.038959574383	19.419	0.1242	19.419	19.366	19.49	0	207	67	1.18585551256002	0.0438150117197025	1.18585551256002	478.347600061872	0	17.6739960988642						589	15	5	NaN	NaN	NaN	5.9226E-14	1	30494	123.99	114.41	1	220440			3781	2594	3216	3285	3781	3781		
EAMCPGVSGEDSSLLLATQVEGQATNLQR	29	Unmodified	_EAMCPGVSGEDSSLLLATQVEGQATNLQR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1021.15701	3060.44921	1.1344	0.0011584	1.5275	0.0015598	2.6619	0.0027182	1021.49288914285	15.748	0.11528	15.748	15.686	15.801	0	159	61	1.21767724410157	0.0397607969895324	1.21767724410157	734.852985828301	0	23.9951436459902						311	14	5	NaN	NaN	NaN	0.00043039	1	38303	44.584	44.511	1	56751			3782	706	3217	3286	3782	3782		
EAMEDGEIDGNK	12	Unmodified	_EAMEDGEIDGNK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.274632	1306.53471	2.6837	0.0017559	-1.3439	-0.00087928	1.3398	0.0008766	654.274078120229	4.0066	0.14188	4.0066	3.9711	4.113	0	498	43	0.991429299781895	0.0282574968538493	0.991429299781895	401.293156597233	0	11.4375680772317						307	17	3	NaN	NaN	NaN	0.0051888	1	12538	65.933	61.026	1	65054			3783	764	3218	3287	3783	3783		
EAMEDGEIDGNK	12	Unmodified	_EAMEDGEIDGNK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.274632	1306.53471	2.812	0.0018398	-0.034409	-2.2513E-05	2.7776	0.0018173	654.275118726155	4.0953	0.31041	4.0953	3.98	4.2904	0	582	82	0.934820374997243	0.054696875418728	0.934820374997243	378.37999549596	0	22.1392301966487						1338	36	5	NaN	NaN	NaN	8.5806E-24	1	12539	220.87	211.89	1	1371900			3784	764	3218	3287	3784	3784		
EAMEDGEIDGNK	12	Unmodified	_EAMEDGEIDGNK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.274632	1306.53471	2.7535	0.0018015	0.53074	0.00034725	3.2842	0.0021488	654.274309663587	3.7583	0.16848	3.7583	3.714	3.8824	0	585	31	0.932794566565362	0.0202566836468107	0.932794566565362	377.560022487038	0	8.19914074045658						361	20	4	NaN	NaN	NaN	4.2021E-05	1	12540	94.804	92.645	1	72255			3785	764	3218	3287	3785	3785		
EAMEDGEIDGNK	12	Oxidation (M)	_EAM(Oxidation (M))EDGEIDGNK_	EAM(1)EDGEIDGNK	EAM(81)EDGEIDGNK	0	1	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.272089	1322.52962	1.9551	0.0012948	-0.79092	-0.0005238	1.1641	0.00077098	662.271845962515	2.5434	0.25718	2.5434	2.5079	2.7651	0	594	28	0.926715457081489	0.018242384517949	0.926715457081489	375.05196182709	0	7.38289412308711						445	30	3	NaN	NaN	NaN	0.0020502	1	13050	81.335	79.365	1	105520			3786	764	3218	3288	3786	3786	259	
EAMEHPYFYPVVK	13	Unmodified	_EAMEHPYFYPVVK_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.389602	1608.76465	2.4763	0.0019944	1.3087	0.001054	3.785	0.0030484	805.390010904314	10.401	0.1951	10.401	10.339	10.534	0	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	437.880688868041	0	8.09976211236688						298	23	4	NaN	NaN	NaN	0.025835	1	21868	44.57	38.193	1	56187			3787	772	3219	3289	3787	3787		
EAMEHPYFYTVVK	13	Unmodified	_EAMEHPYFYTVVK_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.593798	1612.75957	1.0919	0.00058809	0.88369	0.00047595	1.9756	0.001064	538.594402493545	9.8598	0.11527	9.8598	9.8154	9.9307	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	549.237364601168	0	11.0689831603347						254	14	4	NaN	NaN	NaN	0.0038982	1	21967	57.293	47.042	1	69254			3788	1450	3220	3290	3788	3788		
EAMEHPYFYTVVK	13	Unmodified	_EAMEHPYFYTVVK_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.387059	1612.75957	3.1587	0.0025503	-0.8036	-0.00064881	2.3551	0.0019015	807.386873101928	9.8598	0.15072	9.8598	9.8066	9.9573	0	327	37	1.10599442759226	0.0240276252834357	1.10599442759226	446.774238483448	0	9.70612845847916						341	18	4	NaN	NaN	NaN	0.00038698	1	21968	75.474	66.668	1	80413			3789	1450	3220	3290	3789	3789		
EAMGIYISTLK	11	Unmodified	_EAMGIYISTLK_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.328482	1224.64241	0.67462	0.00041376	1.7427	0.0010689	2.4174	0.0014826	613.3294918428	12.361	0.1064	12.361	12.316	12.423	0	546	37	0.959108205975751	0.0242643069631547	0.959108205975751	388.482292572535	0	9.82814403838853						290	13	3	NaN	NaN	NaN	0.0054062	1	10141	50.297	30.81	1	76853			3790	434	3221	3291	3790	3790		
EAMTDIITLFGLSSNSK	17	Unmodified	_EAMTDIITLFGLSSNSK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.963859	1825.91317	1.5869	0.0014504	0.20102	0.00018372	1.7879	0.0016341	914.466246405557	19.853	0.09752	19.853	19.827	19.924	0	246	52	1.1599488233373	0.0339199138812398	1.1599488233373	468.10339374209	0	13.6885580499707						303	12	4	NaN	NaN	NaN	1.1459E-13	1	27877	165.72	150.2	1	103360			3791	1163	3222	3292	3791	3791		
EAMVESIEYR	10	Unmodified	_EAMVESIEYR_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.789721	1225.56489	1.5859	0.00097338	-0.73278	-0.00044977	0.85308	0.00052361	613.789498894445	8.21	0.13307	8.21	8.1302	8.2632	0	576	43	0.938871150116794	0.0283515051757137	0.938871150116794	380.282188018608	0	11.4835485364526						304	16	3	NaN	NaN	NaN	2.7767E-07	1	10156	102.55	98.653	1	251250			3792	1098	3223	3293	3792	3792		
EAMVQAEEAAAEITR	15	Unmodified	_EAMVQAEEAAAEITR_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.890694	1617.76684	1.7943	0.0014532	-0.86719	-0.00070233	0.9271	0.00075085	809.889939013144	11.775	0.13303	11.775	11.731	11.864	0	399	46	1.0578662689527	0.0301195105360905	1.0578662689527	427.321266627307	0	12.1666677256085						475	16	5	NaN	NaN	NaN	4.1696E-17	1	22128	187.47	145.68	1	163200			3793	92	3224	3294	3793	3793		
EANEILQR	8	Unmodified	_EANEILQR_			0	0	0	P12268;P20839	P12268;P20839	P12268	IMPDH2;IMPDH1	Inosine-5-monophosphate dehydrogenase 2;Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.759081	971.503609	1.0863	0.00052875	-1.5048	-0.00073249	-0.41858	-0.00020375	486.759308526703	4.4943	0.33694	4.4943	4.3347	4.6716	0	723	52	0.839303037468863	0.0346496301199423	0.839303037468863	340.941187205947	0	14.0753524078344						555	39	3	NaN	NaN	NaN	0.0025506	1	3662	89.123	58.561	1	237550			3794	666;786	3225	3295	3794	3794		
EANELQQWINEK	12	Unmodified	_EANELQQWINEK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.367712	1500.72087	0.98094	0.00073705	0.48229	0.00036238	1.4632	0.0010994	751.367583356905	12.361	0.15076	12.361	12.298	12.449	0	456	37	1.01965166402748	0.0241672134976301	1.01965166402748	412.157217777656	0	9.76871987564704						405	18	4	NaN	NaN	NaN	3.9E-11	1	18540	153.25	126.3	1	132560			3795	1703	3226	3296	3795	3795		
EANFTVSSMHGDMPQK	16	Unmodified	_EANFTVSSMHGDMPQK_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.599395	1777.77635	1.0075	0.00059806	-0.71057	-0.00042179	0.29695	0.00017627	593.599255288146	7.2875	0.15074	7.2875	7.2521	7.4028	0	672	103	0.873923798053065	0.0690927675336119	0.873923798053065	529.120410810315	0	41.8324728344181						1086	18	5	NaN	NaN	NaN	0.00012157	1	26610	81.48	72.503	1	352660			3796	1008	3227	3297	3796	3796		
EANFTVSSMHGDMPQK	16	Unmodified	_EANFTVSSMHGDMPQK_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.895454	1777.77635	3.1624	0.0028142	-1.9177	-0.0017065	1.2447	0.0011077	889.894108371194	7.2875	0.16846	7.2875	7.2432	7.4117	0	297	73	1.12600091227925	0.0479957663241226	1.12600091227925	454.496286919079	0	19.3728951231433						892	20	5	NaN	NaN	NaN	1.1227E-08	1	26611	105.78	97.778	1	303270			3797	1008	3227	3297	3797	3797		
EANFTVSSMHGDMPQK	16	Oxidation (M)	_EANFTVSSMHGDM(Oxidation (M))PQK_	EANFTVSSM(0.003)HGDM(0.997)PQK	EANFTVSSM(-25)HGDM(25)PQK	0	1	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.892911	1793.77127	2.6299	0.0023614	-1.2976	-0.0011651	1.3323	0.0011963	898.393624946675	5.5849	0.079785	5.5849	5.5494	5.6292	0	252	19	1.15595906938629	0.0119725537119737	1.15595906938629	466.556322399965	0	4.8322391142795						130	10	3	NaN	NaN	NaN	0.00067546	1	27062	73.891	63.641	2	22548			3798	1008	3227	3298	3798	3798	363	
EANLAASFGK	10	Unmodified	_EANLAASFGK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.261456	1006.50836	-0.8245	-0.00041576	-0.68648	-0.00034617	-1.511	-0.00076193	504.261608298121	7.0569	0.23059	7.0569	7.0126	7.2432	0	741	49	0.827064408645228	0.0326363522004895	0.827064408645228	335.806490637396	0	13.251082727166						406	27	3	NaN	NaN	NaN	0.06822	1	4425	31.425	25.677	1	98738			3799	607	3228	3299	3799	3799		
EANLLNAVIVQR	12	Unmodified	_EANLLNAVIVQR_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.388251	1338.76195	0.63301	0.00042436	-0.096671	-6.4807E-05	0.53634	0.00035956	670.388153878054	13.7	0.15959	13.7	13.637	13.797	0	498	43	0.991429299781895	0.0282457786988155	0.991429299781895	401.192056347011	0	11.4299446685642						246	19	3	NaN	NaN	NaN	0.0074193	1	13568	56.202	53.1	1	71959			3800	3309	3229	3300	3800	3800		
EANLQALIATGGDINAAIER	20	Unmodified	_EANLQALIATGGDINAAIER_			0	0	0	Q9UHD9;Q9UMX0;Q9NRR5	Q9UHD9;Q9UMX0;Q9NRR5	Q9UHD9	UBQLN2;UBQLN1;UBQLN4	Ubiquilin-2;Ubiquilin-1;Ubiquilin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.695521	2039.06473	0.27874	0.00018973	2.2125	0.0015061	2.4913	0.0016958	681.030833654043	17.105	0.16848	17.105	17.06	17.229	0	471	25	1.00957851518677	0.0161226065449527	1.00957851518677	610.647117583181	0	9.75181530361874						271	20	4	NaN	NaN	NaN	5.0536E-06	1	32333	122.66	107.71	1	63229			3801	3216;3289;3025	3230	3301	3801	3801		
EANNFLWPFK	10	Unmodified	_EANNFLWPFK_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.319306	1264.62406	0.2104	0.00013325	-0.2185	-0.00013838	-0.0080926	-5.1252E-06	633.319429805686	16.963	0.44337	16.963	16.794	17.238	0	597	67	0.924688525662974	0.0445770735630894	0.924688525662974	374.40876541216	0	18.0493718860381						2298	51	5	NaN	NaN	NaN	1.4865E-08	1	11353	154.35	139.9	1	2987300			3802	752	3231	3302	3802	3802		
EANSIIITPGYGLCAAK	17	Unmodified	_EANSIIITPGYGLCAAK_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.461287	1776.90802	3.2932	0.0029291	-1.329	-0.0011821	1.9642	0.0017471	889.461042248748	12.901	0.1419	12.901	12.839	12.981	0	270	46	1.14398322290989	0.0299622781618634	1.14398322290989	461.756367541388	0	12.0939472277352						486	17	5	NaN	NaN	NaN	0.024289	1	26603	47.915	37.894	1	88225			3803	1664	3232	3303	3803	3803		
EAPCVLIYIPDGHTK	15	Unmodified	_EAPCVLIYIPDGHTK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.62739	1711.86034	0.38448	0.00021978	-0.78442	-0.00044839	-0.39993	-0.00022861	571.626918026482	12.493	0.17733	12.493	12.431	12.609	0	636	37	0.898312834727904	0.0243721251806781	0.898312834727904	544.048705442803	0	14.7605852224677						556	21	5	NaN	NaN	NaN	0.032894	1	24822	58.313	55.598	1	207870			3804	565	3233	3304	3804	3804		
EAPCVLIYIPDGHTK	15	Unmodified	_EAPCVLIYIPDGHTK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.937447	1711.86034	2.4096	0.0020649	1.2319	0.0010557	3.6415	0.0031205	857.440109920751	12.476	0.19505	12.476	12.414	12.609	0	333	97	1.10198982404297	0.0640208210659392	1.10198982404297	444.937024158411	0	25.8489080277991						976	23	4	NaN	NaN	NaN	2.4241E-07	1	24825	95.656	90.268	1	263870			3805	565	3233	3304	3805	3805		
EAPETDTSPSLWDVEFAK	18	Unmodified	_EAPETDTSPSLWDVEFAK_			0	0	0	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.47056	2020.92657	1.5649	0.0015828	4.7825	0.0048374	6.3474	0.0064202	1011.47741442295	15.047	0.28378	15.047	14.905	15.189	0	189	73	1.1977968526266	0.0477129662713132	1.1977968526266	483.02534721613	0	19.2408020186183						701	33	4	NaN	NaN	NaN	0.0037527	1	32001	38.14	33.834	1	180970			3806	2425	3234	3305	3806	3806		
EAPFSEFFLDPGTSVLDTCR	20	Unmodified	_EAPFSEFFLDPGTSVLDTCR_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.53063	2287.0467	0.28848	0.00033017	0.87326	0.00099947	1.1617	0.0013296	1145.03302175951	19.579	0.053206	19.579	19.552	19.605	0	93	49	1.26131825079847	0.0316997848796292	1.26131825079847	508.237092499787	0	12.7731494330574						289	7	4	NaN	NaN	NaN	1.5148E-06	1	35535	73.305	67.402	1	61555			3807	3360	3235	3306	3807	3807		
EAPPMEKPEVVK	12	Unmodified	_EAPPMEKPEVVK_			0	0	1	P62841	P62841	P62841	RPS15	40S ribosomal protein S15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.35777	1352.70099	2.5864	0.0017519	-0.90497	-0.00061299	1.6814	0.0011389	677.357183268713	4.7869	0.29261	4.7869	4.6982	4.9908	0	480	58	1.00353128488872	0.0383097280775055	1.00353128488872	406.046493271704	0	15.5007930278812						1087	34	4	NaN	NaN	NaN	0.0089492	1	13975	71.896	63.423	1	352650			3808	1402	3236	3307	3808	3808		
EAPVDVLTQIGR	12	Unmodified	_EAPVDVLTQIGR_			0	0	0	Q9BVC6	Q9BVC6	Q9BVC6	TMEM109	Transmembrane protein 109	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.359159	1296.70376	1.9386	0.0012588	-3.0023	-0.0019496	-1.0638	-0.00069078	649.358244391514	13.859	0.2128	13.859	13.77	13.983	0	519	82	0.97729762293174	0.0545758442821291	0.97729762293174	395.604573019003	0	22.0919943605463						1735	25	6	NaN	NaN	NaN	0.0010477	1	12262	92.428	73.104	1	718910			3809	2762	3237	3308	3809	3809		
EAQDDLVK	8	Unmodified	_EAQDDLVK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.232364	916.450176	0.19801	9.0932E-05	-0.22428	-0.000103	-0.026273	-1.2066E-05	459.232471468235	3.2883	0.22178	3.2883	3.2439	3.4657	0	741	31	0.827064408645228	0.020406225036543	0.827064408645228	336.251133887023	0	8.29635060482298						304	26	2	NaN	NaN	NaN	0.068587	1	2632	27.736	21.506	1	84677			3810	710	3238	3309	3810	3810		
EAQLYAAQAHLK	12	Unmodified	_EAQLYAAQAHLK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.859326	1341.7041	2.923	0.0019638	-0.33475	-0.0002249	2.5882	0.0017389	671.85935288187	5.6381	0.27492	5.6381	5.5937	5.8687	8.8818E-16	435	43	1.03374239103424	0.0281717327026458	1.03374239103424	418.30511197301	0	11.3997257971243						647	32	5	NaN	NaN	NaN	2.4953E-05	1	13669	117.99	92.129	1	434780			3811	1126	3239	3310	3811	3811		
EAQQALGSAAADATEAK	17	Unmodified	_EAQQALGSAAADATEAK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.397198	1630.77984	2.238	0.0018271	-1.3202	-0.0010778	0.91787	0.00074935	816.396275379213	6.3033	0.23944	6.3033	6.25	6.4895	0	378	58	1.07192009927972	0.0381461250343338	1.07192009927972	432.968927793488	0	15.4079458596679						634	28	4	NaN	NaN	NaN	9.6077E-10	1	22511	89.923	77.904	1	192710			3812	639	3240	3311	3812	3812		
EAQSFISAAIEPESGK	16	Unmodified	_EAQSFISAAIEPESGK_			0	0	0	Q8WXA9	Q8WXA9	Q8WXA9	SREK1	Splicing regulatory glutamine/lysine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.412317	1662.81008	1.7353	0.0014445	0.98048	0.00081617	2.7158	0.0022607	832.412935015682	11.864	0.1685	11.864	11.784	11.953	0	240	34	1.16393748060522	0.0219361104530864	1.16393748060522	470.060200296088	0	8.85897451118535						419	20	4	NaN	NaN	NaN	1.0172E-08	1	23420	103.23	61.435	1	110280			3813	2395	3241	3312	3813	3813		
EAQTSFLHLGYLPNQLFR	18	Unmodified	_EAQTSFLHLGYLPNQLFR_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.040851	2133.10072	-0.28173	-0.0002006	-0.70412	-0.00050136	-0.98585	-0.00070197	712.374797950854	17.362	0.14188	17.362	17.291	17.433	0	639	58	0.896281965493857	0.0385918846730076	0.896281965493857	541.957811587667	0	23.3354838852553						639	17	5	NaN	NaN	NaN	1.6368E-10	1	33787	121.86	98.716	1	203660			3814	2404	3242	3313	3814	3814		
EAQVQYPLQTFAIGMEDSPDLLAAR	25	Unmodified	_EAQVQYPLQTFAIGMEDSPDLLAAR_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	921.793453	2762.35853	1.1432	0.0010538	0.17557	0.00016184	1.3188	0.0012157	922.128143224184	19.747	0.12413	19.747	19.649	19.774	0	441	25	1.02971785871157	0.0161003532377459	1.02971785871157	621.725270554924	0	9.72110601761574						161	15	4	NaN	NaN	NaN	3.2624E-06	1	37794	75.006	70.357	1	24150			3815	581	3243	3314	3815	3815		
EAQVYQAFK	9	Unmodified	_EAQVYQAFK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.277106	1082.53966	0.52737	0.00028598	0.44886	0.00024341	0.97623	0.00052939	542.277285104991	6.72	0.097561	6.72	6.6757	6.7732	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	357.7956726301	0	6.5972329492634						147	12	3	NaN	NaN	NaN	0.0076053	1	6269	79.809	67.743	1	31911			3816	2557	3244	3315	3816	3816		
EASDIILTDDNFTSIVK	17	Unmodified	_EASDIILTDDNFTSIVK_			0	0	0	P20020;Q16720;P23634	P20020;P23634	P20020	ATP2B1;ATP2B3;ATP2B4	Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 3;Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.978021	1879.94149	1.2792	0.0012037	-1.0837	-0.0010197	0.1955	0.00018396	941.976901110253	15.925	0.28378	15.925	15.73	16.014	0	228	67	1.17191150690002	0.0438511426752775	1.17191150690002	472.828524031963	0	17.6925228109696						605	33	4	NaN	NaN	NaN	0.00013319	1	29154	65.408	57.443	1	176060			3817	775;825	3245	3316	3817	3817		
EASDPQPEEADGGLK	15	Unmodified	_EASDPQPEEADGGLK_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.849549	1541.68455	3.0157	0.0023277	-1.7169	-0.0013252	1.2988	0.0010025	771.848352202543	4.5652	0.21282	4.5652	4.5209	4.7337	0	462	94	1.01562323939346	0.0623846285765692	1.01562323939346	410.429188278846	0	25.2106012098048						854	25	3	NaN	NaN	NaN	1.3578E-06	1	19761	108.5	101.75	1	356410			3818	1226	3246	3317	3818	3818		
EASFEYLQNEGER	13	Unmodified	_EASFEYLQNEGER_			0	0	0	Q13085;O00763	Q13085	Q13085	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.352259	1570.68997	1.885	0.0014823	-0.33761	-0.00026548	1.5474	0.0012168	786.352262123316	8.8753	0.17749	8.8753	8.8221	8.9996	0	438	40	1.03173026378327	0.0261612711685622	1.03173026378327	416.869749464863	0	10.5704397171893						434	21	4	NaN	NaN	NaN	8.154E-12	1	20671	175.64	158.98	1	111990			3819	1625	3247	3318	3819	3819		
EASGDLPEAQIVK	13	Unmodified	_EASGDLPEAQIVK_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.853906	1355.69326	1.6926	0.001149	0.77679	0.00052733	2.4694	0.0016764	678.854477390586	8.1833	0.15087	8.1833	8.1036	8.2544	0	486	34	0.999498404980629	0.0221823754430851	0.999498404980629	404.4056832029	0	8.97518060201207						351	18	3	NaN	NaN	NaN	0.015558	1	14063	53.028	46.651	1	89783			3820	1227	3248	3319	3820	3820		
EASIDILHSIVK	12	Unmodified	_EASIDILHSIVK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.877185	1323.73982	1.1346	0.00075213	0.76432	0.00050665	1.899	0.0012588	662.877729468172	13.345	0.15965	13.345	13.292	13.451	0	480	46	1.00353128488872	0.0302445172563094	1.00353128488872	406.136328366703	0	12.2401736514502						447	19	3	NaN	NaN	NaN	2.6313E-23	1	13113	211.84	170.05	1	358720			3821	63	3249	3320	3821	3821		
EASMVITESPAALQLR	16	Unmodified	_EASMVITESPAALQLR_			0	0	0	P27105	P27105	P27105	STOM	Erythrocyte band 7 integral membrane protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.453462	1714.89237	2.1563	0.0018511	-2.4828	-0.0021313	-0.32642	-0.00028021	858.452590768413	13.469	0.21285	13.469	13.354	13.567	0	306	31	1.12000185836644	0.0199982246978856	1.12000185836644	452.203115986364	0	8.0743254620748						230	25	4	NaN	NaN	NaN	2.7593E-12	1	24913	138	121.71	1	84165			3822	861	3250	3321	3822	3822		
EASSASQFEELEIVLK	16	Unmodified	_EASSASQFEELEIVLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.454182	1778.89381	1.6186	0.0014413	4.2125	0.003751	5.8311	0.0051923	890.459159583047	16.528	0.19506	16.528	16.484	16.679	0	273	25	1.14198628764525	0.0159721879944936	1.14198628764525	460.946322392735	0	6.44694371226484						195	23	2	NaN	NaN	NaN	1.7874E-08	1	26650	98.167	80.069	1	79469			3823	2167	3251	3322	3823	3823		
EATDAIGHLDR	11	Unmodified	_EATDAIGHLDR_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.296559	1196.57856	2.1535	0.0012906	-0.26548	-0.0001591	1.888	0.0011315	599.296503187826	5.044	0.266	5.044	4.9819	5.2479	0	585	40	0.932794566565362	0.0263355149208984	0.932794566565362	377.922829365011	0	10.6698652291013						530	31	4	NaN	NaN	NaN	7.6673E-17	1	9344	212.4	193.14	1	207300			3824	1606	3252	3323	3824	3824		
EATDPRPCEVENAVESWR	18	Unmodified	_EATDPRPCEVENAVESWR_			0	0	1	P47755	P47755	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.66037	2143.95928	0.55317	0.00039588	0.13441	9.6192E-05	0.68758	0.00049207	715.995014462587	11.456	0.17738	11.456	11.35	11.527	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	546.850935527701	0	12.2737652494085						500	21	5	NaN	NaN	NaN	0.00010168	1	33927	55.782	53.235	1	119650			3825	1099	3253	3324	3825	3825		
EATEAQSLEATCEK	14	Unmodified	_EATEAQSLEATCEK_			0	0	0	Q96PC5;Q96RT6	Q96PC5	Q96PC5	MIA2;CTAGE1	Melanoma inhibitory activity protein 2;cTAGE family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.851235	1565.68792	2.3396	0.0018339	0.18916	0.00014827	2.5287	0.0019821	783.850815925134	4.8046	0.10641	4.8046	4.7603	4.8667	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.255007267403	0	7.32022147994945						116	13	2	NaN	NaN	NaN	0.00010656	1	20511	86.243	83.571	1	29502			3826	2595	3254	3325	3826	3826		
EATNPPVIQEEK	12	Unmodified	_EATNPPVIQEEK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.846081	1353.67761	2.8203	0.0019117	-0.41395	-0.00028059	2.4064	0.0016311	677.846123675596	4.9553	0.58522	4.9553	4.7691	5.3544	0	525	73	0.973257487423603	0.0485084964826091	0.973257487423603	393.794304148823	0	19.6272516415387						1800	67	5	NaN	NaN	NaN	0.0005032	1	14012	60.547	51.033	1	1533900			3827	904	3255	3326	3827	3827		
EATTDFTVDSRPLTQVGGDHIK	22	Unmodified	_EATTDFTVDSRPLTQVGGDHIK_			0	0	1	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	597.551393	2386.17647	0.40821	0.00024393	0.45904	0.0002743	0.86725	0.00051823	597.802476853194	9.6913	0.079814	9.6913	9.6558	9.7356	0	651	28	0.888155670855968	0.018290507163651	0.888155670855968	715.565916958121	0	14.7362269472121						262	10	5	NaN	NaN	NaN	0.0013263	1	36277	48.892	42.688	1	93833			3828	326	3256	3327	3828	3828		
EATTDFTVDSRPLTQVGGDHIK	22	Unmodified	_EATTDFTVDSRPLTQVGGDHIK_			0	0	1	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	796.399432	2386.17647	2.2322	0.0017777	0.25925	0.00020647	2.4914	0.0019842	796.733919586629	9.6913	0.1064	9.6913	9.6558	9.7622	0	432	37	1.035754240522	0.0241405316442127	1.035754240522	625.863461684927	0	14.587125121638						501	13	6	NaN	NaN	NaN	1.9619E-11	1	36278	142.32	116.61	1	284460			3829	326	3256	3327	3829	3829		
EATTNAPFR	9	Unmodified	_EATTNAPFR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.751256	1005.48796	0.6835	0.00034432	0.32127	0.00016184	1.0048	0.00050616	503.751228158173	4.0686	0.26601	4.0686	4.0154	4.2815	0	720	49	0.841341816837976	0.0326318160888205	0.841341816837976	341.608105469444	0	13.249422112435						391	31	2	NaN	NaN	NaN	0.0091961	1	4400	49.325	43.095	1	102550			3830	916	3257	3328	3830	3830		
EATTTLHMLTLLK	13	Unmodified	_EATTTLHMLTLLK_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.413077	1470.8116	1.3124	0.00096647	1.6534	0.0012176	2.9658	0.002184	736.414217052548	13.451	0.1419	13.451	13.416	13.558	0	378	31	1.07192009927972	0.0200699816330834	1.07192009927972	433.365337320498	0	8.11406966459697						330	17	4	NaN	NaN	NaN	5.657E-24	1	17622	159.12	137.97	1	106790			3831	1968	3258	3329	3831	3831		
EAVAMESYAK	10	Unmodified	_EAVAMESYAK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.760432	1097.50631	0.93323	0.00051306	2.7772	0.0015268	3.7104	0.0020398	549.76209273751	5.3632	0.32808	5.3632	5.2657	5.5937	0	633	40	0.900343422309015	0.0263976438859336	0.900343422309015	365.15032539909	0	10.7060350704818						633	38	3	NaN	NaN	NaN	5.8664E-05	1	6640	65.404	52.577	1	444700			3832	1461	3259	3330	3832	3832		
EAVAPVQEESDLEK	14	Unmodified	_EAVAPVQEESDLEK_			0	0	0	Q13409	Q13409	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.377943	1542.74133	2.4575	0.0018982	-1.154	-0.00089133	1.3035	0.0010068	772.377027651513	6.8707	0.21279	6.8707	6.8264	7.0392	0	444	46	1.02770517576159	0.030194421347751	1.02770517576159	415.309153068796	0	12.2019620539947						329	25	2	NaN	NaN	NaN	6.9298E-07	1	19808	136.06	108.68	1	297720			3833	1661	3260	3331	3833	3833		
EAVCIVLSDDTCSDEK	16	Unmodified	_EAVCIVLSDDTCSDEK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.900599	1839.78664	2.6982	0.0024848	-0.586	-0.00053964	2.1122	0.0019451	920.899814837174	9.9041	0.38124	9.9041	9.842	10.223	0	270	37	1.14398322290989	0.0239648752236348	1.14398322290989	461.634150037996	0	9.67060056745311						796	44	4	NaN	NaN	NaN	0.0024346	1	28211	70.806	68.327	1	143680			3834	1265	3261	3332	3834	3834		
EAVELPLTHFELYK	14	Unmodified	_EAVELPLTHFELYK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.634651	1687.88212	0.31511	0.00017761	-0.44946	-0.00025333	-0.13434	-7.5719E-05	563.634334147815	15.189	0.24827	15.189	15.03	15.278	0	621	34	0.908462957275599	0.0223240803246195	0.908462957275599	550.258660495492	0	13.5217605053018						519	29	4	NaN	NaN	NaN	0.043599	1	24148	48.701	31.709	1	206410			3835	1068	3262	3333	3835	3835		
EAVELPLTHFELYK	14	Unmodified	_EAVELPLTHFELYK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.948338	1687.88212	1.9386	0.001638	0.97096	0.00082041	2.9096	0.0024584	844.949474257571	15.189	0.31923	15.189	15.012	15.331	1.7764E-15	291	64	1.12999890578964	0.0419702899693128	1.12999890578964	456.297964325587	0	16.9477667429858						947	37	5	NaN	NaN	NaN	0.00032621	1	24151	74.524	53.373	1	321140			3836	1068	3262	3333	3836	3836		
EAVGDLLDAFK	11	Unmodified	_EAVGDLLDAFK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.308603	1176.60265	0.66991	0.00039478	-2.2589	-0.0013312	-1.589	-0.00093643	589.307437594043	16.519	0.266	16.519	16.457	16.723	0	591	58	0.928742107665821	0.0385170505525262	0.928742107665821	376.353796849306	0	15.6082491568218						1028	31	5	NaN	NaN	NaN	2.8919E-05	1	8788	104.39	80.273	1	786450			3837	1544	3263	3334	3837	3837		
EAVIAQISSHVK	12	Unmodified	_EAVIAQISSHVK_			0	0	0	O14672	O14672	O14672	ADAM10	Disintegrin and metalloproteinase domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.361702	1280.70885	1.7659	0.0011326	0.11506	7.3797E-05	1.8809	0.0012063	641.361999101756	8.0414	0.079917	8.0414	8.0059	8.0858	0	474	25	1.00756305028564	0.0161248344128324	1.00756305028564	407.909522417279	0	6.52810114715055						135	10	3	NaN	NaN	NaN	0.020526	1	11791	30.349	19.647	1	25432			3838	111	3264	3335	3838	3838		
EAVQLVNTR	9	Unmodified	_EAVQLVNTR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.288005	1028.56146	0.20527	0.00010577	0.41431	0.00021349	0.61958	0.00031926	515.288448347231	5.4519	0.19503	5.4519	5.3278	5.5228	0	687	19	0.863749705078866	0.0122114546668257	0.863749705078866	350.6001051913	0	4.95668741251495						104	23	2	NaN	NaN	NaN	0.031685	1	4957	39.01	12.787	1	47909			3839	1259	3265	3336	3839	3839		
EAVQLVNTREEVEDLCR	17	Unmodified	_EAVQLVNTREEVEDLCR_			0	0	1	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.340749	2059.00042	0.59661	0.00041007	0.27657	0.0001901	0.87318	0.00060017	687.34135049789	10.418	0.079785	10.418	10.383	10.463	0	627	46	0.90440375274676	0.0304377111147065	0.90440375274676	546.996013923948	0	18.4091525517753						244	10	4	NaN	NaN	NaN	0.00010884	1	32685	72.031	64.825	1	53146			3840	1259	3266	3337	3840	3840		
EAVTEILGIEPDREK	15	Unmodified	_EAVTEILGIEPDREK_			0	0	1	Q15631	Q15631	Q15631	TSN	Translin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.96847	1697.88358	-0.80704	-0.00045757	0.46545	0.00026389	-0.34159	-0.00019367	567.302402506759	11.944	0.097533	11.944	11.882	11.979	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	536.701799543285	0	12.3098348854942						201	12	4	NaN	NaN	NaN	0.0026629	1	24442	66.953	32.761	1	49787			3841	1857	3267	3338	3841	3841		
EAVTEILGIEPDREK	15	Unmodified	_EAVTEILGIEPDREK_			0	0	1	Q15631	Q15631	Q15631	TSN	Translin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.949066	1697.88358	0.95231	0.00080942	1.1086	0.00094229	2.061	0.0017517	849.94990066785	11.935	0.15075	11.935	11.882	12.032	0	294	43	1.12800004657306	0.0279859609320023	1.12800004657306	455.468965970026	0	11.3002980151482						512	18	4	NaN	NaN	NaN	4.6497E-05	1	24443	108.24	91.252	1	152930			3842	1857	3267	3338	3842	3842		
EAVTFDQANPTQILGK	16	Unmodified	_EAVTFDQANPTQILGK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.449234	1730.88391	2.0035	0.0017359	-1.0914	-0.00094562	0.9121	0.00079029	866.949719914151	13.079	0.1596	13.079	13.008	13.167	0	294	58	1.12800004657306	0.0380044844470024	1.12800004657306	455.398658387609	0	15.3432540029213						625	19	4	NaN	NaN	NaN	4.1968E-12	1	25358	154.09	140.91	1	190680			3843	3330	3268	3339	3843	3843		
EAVVHGLNESEASYLITSVELLESK	25	Unmodified	_EAVVHGLNESEASYLITSVELLESK_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.467512	2716.38071	0.19035	0.00017255	-0.13817	-0.00012525	0.052178	4.7298E-05	906.802164898343	19.197	0.044346	19.197	19.179	19.224	0	420	31	1.04379886199097	0.0201060050174831	1.04379886199097	630.280556664379	0	12.1406762319556						124	6	3	NaN	NaN	NaN	0.00014551	1	37655	44.667	44.067	1	22709			3844	260	3269	3340	3844	3844		
EAVVNTQELLDLLVK	15	Unmodified	_EAVVNTQELLDLLVK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.480002	1682.94545	1.8328	0.0015441	-0.49877	-0.00042021	1.3341	0.0011239	842.480149136349	19.889	0.070957	19.889	19.871	19.942	0	327	43	1.10599442759226	0.0280283709863309	1.10599442759226	446.615536162136	0	11.3182359906305						210	9	5	NaN	NaN	NaN	6.79E-33	1	23997	252.75	182.36	1	100130			3845	2064	3270	3341	3845	3845		
EAVVQEPER	9	Unmodified	_EAVVQEPER_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.769645	1055.52474	0.94054	0.00049733	3.9204	0.002073	4.861	0.0025703	528.77233962976	3.4923	0.1154	3.4923	3.4479	3.5633	0	681	61	0.867820189810857	0.0406935653833497	0.867820189810857	352.133464972725	0	16.5121373629901						221	14	2	NaN	NaN	NaN	0.0032423	1	5605	46.447	35.745	1	41493			3846	2546	3271	3342	3846	3846		
EAVVYLAHTHDGAR	14	Unmodified	_EAVVYLAHTHDGAR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.889146	1537.76374	2.7461	0.0021142	-2.518	-0.0019386	0.22805	0.00017558	769.886279470756	4.3081	0.044255	4.3081	4.2904	4.3347	0	384	19	1.06790610341098	0.0120436486184876	1.06790610341098	431.567304965338	0	4.86713668891718						52	6	2	NaN	NaN	NaN	0.0043595	1	19660	39.702	28.915	1	9402.4			3847	1842	3272	3343	3847	3847		
EAVVYLAHTHDGAR	14	Unmodified	_EAVVYLAHTHDGAR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.59519	1537.76374	0.71178	0.00036557	0.68943	0.00035409	1.4012	0.00071965	513.59537803186	4.3081	0.10642	4.3081	4.2815	4.3879	0	729	25	0.835224628594324	0.0163159042618426	0.835224628594324	506.299465736514	0	9.89043345702316						211	13	4	NaN	NaN	NaN	6.0637E-06	1	19661	110.52	99.734	1	59762			3848	1842	3272	3343	3848	3848		
EAWEEEQEVAELLK	14	Unmodified	_EAWEEEQEVAELLK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.91215	1701.80975	1.5649	0.0013331	1.5903	0.0013548	3.1551	0.0026879	851.91357029714	16.165	0.14189	16.165	16.111	16.253	0	267	43	1.14597988355104	0.0279551776858049	1.14597988355104	462.720300671989	0	11.2876573225977						367	17	3	NaN	NaN	NaN	6.03E-17	1	24550	138.71	120.98	1	137720			3849	3238	3273	3344	3849	3849		
EAYHAVVLSYGAEDHR	16	Unmodified	_EAYHAVVLSYGAEDHR_			0	0	0	P22570	P22570	P22570	FDXR	NADPH:adrenodoxin oxidoreductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.291947	1815.85401	0.92478	0.00056069	2.6312	0.0015953	3.556	0.002156	606.293626270585	6.6313	0.18621	6.6313	6.4895	6.6757	0	600	43	0.922661313351899	0.0283711492854036	0.922661313351899	558.538139713324	0	17.174632461646						230	22	3	NaN	NaN	NaN	0.0029568	1	27621	66.953	61.566	1	57328			3850	806	3274	3345	3850	3850		
EAYLVGLFEDTNLCAIHAK	19	Unmodified	_EAYLVGLFEDTNLCAIHAK_			0	0	0	Q5TEC6	Q5TEC6	Q5TEC6	HIST2H3PS2	Histone H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.029623	2163.06704	-0.062421	-4.507E-05	0.38456	0.00027766	0.32213	0.00023259	722.364190042802	17.291	0.10642	17.291	17.255	17.362	0	516	43	0.979317271586824	0.0282692223025561	0.979317271586824	592.114019539758	0	17.0921144071189						349	13	4	NaN	NaN	NaN	0.000357	1	34222	51.829	44.974	1	86158			3851	2000	3275	3346	3851	3851		
EAYMGNVLQGGEGQAPTR	18	Unmodified	_EAYMGNVLQGGEGQAPTR_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.444157	1876.87376	2.7527	0.002586	-2.0253	-0.0019027	0.72734	0.0006833	939.442222703614	9.1681	0.26607	9.1681	9.106	9.3721	0	294	97	1.12800004657306	0.0639855820061774	1.12800004657306	455.117117446341	0	25.8164294666913						1319	31	6	NaN	NaN	NaN	8.7565E-35	1	29072	227.47	215.46	1	538090			3852	832	3276	3347	3852	3852		
EAYMGNVLQGGEGQAPTR	18	Oxidation (M)	_EAYM(Oxidation (M))GNVLQGGEGQAPTR_	EAYM(1)GNVLQGGEGQAPTR	EAYM(69)GNVLQGGEGQAPTR	0	1	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.441614	1892.86867	2.8568	0.0027067	-2.3484	-0.0022249	0.50849	0.00048176	947.439672628469	6.658	0.079814	6.658	6.6225	6.7023	0	339	31	1.09798411722691	0.0200285363602049	1.09798411722691	442.979045000156	0	8.0804647083624						187	10	3	NaN	NaN	NaN	0.0002982	1	29435	69.201	64.646	1	42491			3853	832	3276	3348	3853	3853	280	
EAYPGDVFYLHSR	13	Unmodified	_EAYPGDVFYLHSR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.584291	1552.73104	0.63687	0.00033027	2.2579	0.0011709	2.8948	0.0015012	519.255776047398	10.516	0.23944	10.516	10.401	10.64	0	693	52	0.85967808974117	0.034596730190302	0.85967808974117	521.077981329955	0	20.9701684192131						609	28	4	NaN	NaN	NaN	0.053494	1	20143	31.04	23.394	1	162240			3854	840	3277	3349	3854	3854		
EAYPGDVFYLHSR	13	Unmodified	_EAYPGDVFYLHSR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.372798	1552.73104	2.2982	0.0017866	5.0985	0.0039634	7.3967	0.00575	777.372103473267	10.507	0.31922	10.507	10.374	10.693	0	381	58	1.06991323971056	0.0381461250343338	1.06991323971056	432.341220231258	0	15.4144669234111						777	37	4	NaN	NaN	NaN	0.0058143	1	20146	65.879	60.383	1	376240			3855	840	3277	3349	3855	3855		
ECADLWPR	8	Unmodified	_ECADLWPR_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.739834	1045.46511	0.74358	0.00038944	1.169	0.00061224	1.9126	0.0010017	523.740423126625	8.5293	0.24829	8.5293	8.3785	8.6268	0	648	46	0.890187667287968	0.0304884139621503	0.890187667287968	361.254235454662	0	12.3727491189326						433	29	2	NaN	NaN	NaN	0.0011589	1	5357	100.75	53.919	1	171300			3856	1400	3278	3350	3856	3856		
ECCQPVLVYIPPQAELR	17	Unmodified	_ECCQPVLVYIPPQAELR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1036.51881	2071.02307	0.52424	0.00054338	1.2391	0.0012843	1.7633	0.0018277	1037.02161744458	14.826	0.12416	14.826	14.764	14.888	0	162	34	1.21569043230068	0.0218579314296279	1.21569043230068	490.160236474634	0	8.81300745134337						231	15	2	NaN	NaN	NaN	0.0012443	1	32889	61.042	45.514	1	59296			3857	1625	3279	3351	3857	3857		
ECDWLNNYHLTCR	13	Unmodified	_ECDWLNNYHLTCR_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.255851	1779.74572	0.59753	0.00035509	0.22975	0.00013653	0.82728	0.00049162	594.256066263519	11.039	0.097535	11.039	11.004	11.101	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	538.962816541761	0	13.5310864304283						299	12	4	NaN	NaN	NaN	0.00024992	1	26660	72.922	63.66	1	87861			3858	3005	3280	3352	3858	3858		
ECEDTHLGEEVDR	13	Unmodified	_ECEDTHLGEEVDR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.830834	1587.64711	2.6049	0.0020705	-1.1683	-0.00092863	1.4366	0.0011418	794.829987477975	4.2904	0.053195	4.2904	4.2726	4.3258	0	441	34	1.02971785871157	0.0221456308390058	1.02971785871157	416.017805199106	0	8.94708842664977						94	7	2	NaN	NaN	NaN	0.069858	1	21187	9.2617	8.8587	1	20154			3859	240	3281	3353	3859	3859		
ECFYIPK	7	Unmodified	_ECFYIPK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.730946	955.447339	0.54533	0.00026106	0.28042	0.00013424	0.82574	0.00039531	478.731185669793	8.547	0.088667	8.547	8.5116	8.6002	0	639	31	0.896281965493857	0.020312920651839	0.896281965493857	364.172503330357	0	8.2534374767377						189	11	3	NaN	NaN	NaN	0.014501	1	3335	61.494	41.147	1	60542			3860	1903	3282	3354	3860	3860		
ECGQLLISENQK	12	Unmodified	_ECGQLLISENQK_			0	0	0	Q8IWS0	Q8IWS0	Q8IWS0	PHF6	PHD finger protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.850841	1417.68713	2.2045	0.0015648	-3.1024	-0.0022023	-0.89799	-0.00063744	709.850943142203	6.7998	0.23054	6.7998	6.7466	6.9771	0	471	49	1.00957851518677	0.0322585904613818	1.00957851518677	408.3038621528	0	13.0463424833788						503	27	3	NaN	NaN	NaN	0.0046581	1	16005	64.266	49.81	1	146440			3861	2205	3283	3355	3861	3861		
ECGVGVIVTPEQIEEAVEAAINR	23	Unmodified	_ECGVGVIVTPEQIEEAVEAAINR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.419727	2482.23735	1.2375	0.0010251	0.098316	8.1447E-05	1.3358	0.0011066	828.754244151053	20.128	0.017749	20.128	20.128	20.146	0	369	22	1.07793901817685	0.0140422088488203	1.07793901817685	651.208077037006	0	8.48322555134757						39	3	3	NaN	NaN	NaN	2.9669E-06	1	36740	62.711	60.26	1	13562			3862	1101	3284	3356	3862	3862		
ECHLNADTVSSK	12	Unmodified	_ECHLNADTVSSK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.811716	1359.60888	2.1372	0.001455	-2.6414	-0.0017983	-0.5042	-0.00034326	680.810632102027	2.9513	0.133	2.9513	2.9158	3.0488	0	546	31	0.959108205975751	0.0202258527858471	0.959108205975751	388.052193295129	0	8.18331705005846						222	16	3	NaN	NaN	NaN	0.00064418	1	14166	78.043	72.176	1	44932			3863	1423	3285	3357	3863	3863		
ECHLNADTVSSK	12	Unmodified	_ECHLNADTVSSK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.210236	1359.60888	-0.34582	-0.00015708	1.1255	0.00051122	0.7797	0.00035415	454.210717741747	2.9336	0.1064	2.9336	2.9158	3.0222	0	831	31	0.76571780291124	0.0204887515295875	0.76571780291124	464.707077568156	0	12.4344344746002						183	13	3	NaN	NaN	NaN	0.026078	1	14167	43.168	41.369	1	42870			3864	1423	3285	3357	3864	3864		
ECICEVEGQVPCPSLVPLPK	20	Unmodified	_ECICEVEGQVPCPSLVPLPK_			0	0	0	P82663	P82663	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1156.06018	2310.10581	-0.49142	-0.00056812	-2.0059	-0.0023189	-2.4973	-0.0028871	1156.56055203501	14.852	0.11528	14.852	14.764	14.879	0	93	49	1.26131825079847	0.0316911012393521	1.26131825079847	508.206459970354	0	12.7688807826396						303	14	4	NaN	NaN	NaN	0.010629	1	35717	39.82	39.456	1	50340			3865	1470	3286	3358	3865	3865		
ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK	38	Unmodified	_ECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDK_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1074.99469	4295.94967	1.5808	0.0016994	-0.27308	-0.00029356	1.3078	0.0014058	1075.4960081861	17.539	0.15075	17.539	17.486	17.637	0	399	94	1.0578662689527	0.0622899894930677	1.0578662689527	850.102350855948	0	50.0562954476972						1544	18	7	NaN	NaN	NaN	0.00013527	1	38783	31.971	31.906	1	372500			3866	1447;2696	3287	3359	3866	3866		
ECLPLIIFLR	10	Unmodified	_ECLPLIIFLR_			0	0	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.370484	1272.72641	0.96349	0.0006141	-1.0904	-0.00069496	-0.12688	-8.0867E-05	637.369557944188	19.543	0.25714	19.543	19.437	19.694	0	549	118	0.957085760909907	0.0787773365651725	0.957085760909907	387.499843557584	0	31.8949532441753						1983	30	5	NaN	NaN	NaN	0.014719	1	11580	53.878	31.835	1	1322800			3867	1394	3288	3360	3867	3867		
ECLQALEFLHANQVIHR	17	Unmodified	_ECLQALEFLHANQVIHR_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	520.270458	2077.05273	-1.8119	-0.00094269	-1.1743	-0.00061095	-2.9862	-0.0015536	520.520635522156	13.105	0.097537	13.105	13.07	13.167	0	780	22	0.800512323802183	0.0143092140004129	0.800512323802183	645.508419824114	0	11.538508332339						227	12	5	NaN	NaN	NaN	9.868E-05	1	32974	103.76	98.666	1	80155			3868	1638	3289	3361	3868	3868		
ECLQALEFLHANQVIHR	17	Unmodified	_ECLQALEFLHANQVIHR_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.358186	2077.05273	0.57461	0.00039841	-0.86391	-0.000599	-0.2893	-0.00020059	693.692117803726	13.105	0.10642	13.105	13.07	13.176	0	579	31	0.936845902828289	0.0202538779292779	0.936845902828289	566.584527131386	0	12.2491156918045						343	13	5	NaN	NaN	NaN	2.1182E-07	1	32975	115.05	111.8	1	134740			3869	1638	3289	3361	3869	3869		
ECPSDECGAGVFMASHFDR	19	Unmodified	_ECPSDECGAGVFMASHFDR_			0	0	0	P62979	P62979	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.43261	2170.85066	1.6635	0.0018073	-0.8804	-0.00095649	0.78313	0.00085082	1086.93395832018	10.746	0.070941	10.746	10.72	10.791	0	144	28	1.22760721615852	0.0178714995512526	1.22760721615852	494.813409791425	0	7.20349107975528						182	9	3	NaN	NaN	NaN	0.022272	1	34318	16.155	15.85	1	35917			3870	1419	3290	3362	3870	3870		
ECPSDECGAGVFMASHFDR	19	Unmodified	_ECPSDECGAGVFMASHFDR_			0	0	0	P62979	P62979	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.624163	2170.85066	2.3321	0.0016899	0.55973	0.00040559	2.8918	0.0020955	724.959494989374	10.755	0.47884	10.755	10.676	11.154	0	441	85	1.02971785871157	0.056351284675243	1.02971785871157	622.572950349113	0	34.0702895064148						1884	55	7	NaN	NaN	NaN	3.8433E-08	1	34319	166.65	163.76	1	1468400			3871	1419	3290	3362	3871	3871		
ECPSDECGAGVFMASHFDR	19	Oxidation (M)	_ECPSDECGAGVFM(Oxidation (M))ASHFDR_	ECPSDECGAGVFM(1)ASHFDR	ECPSDECGAGVFM(64)ASHFDR	0	1	0	P62979	P62979	P62979	RPS27A	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.955801	2186.84557	1.6718	0.0012203	0.88803	0.00064823	2.5598	0.0018685	730.291156681457	8.618	0.1331	8.618	8.5648	8.6979	0	438	34	1.03173026378327	0.022139515615524	1.03173026378327	623.760676320637	0	13.385048125962						470	16	5	NaN	NaN	NaN	0.0019016	1	34540	63.947	63.848	1	120540			3872	1419	3290	3363	3872	3872	508	
ECPSVLEYK	9	Unmodified	_ECPSVLEYK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.768257	1123.52196	1.3487	0.00075901	2.4055	0.0013537	3.7542	0.0021127	562.768871342277	7.0214	0.24834	7.0214	6.9594	7.2077	0	597	37	0.924688525662974	0.0243282375267269	0.924688525662974	374.916221323961	0	9.86391701838494						647	29	4	NaN	NaN	NaN	0.012358	1	7355	48.157	25.771	1	377880			3873	3450	3291	3364	3873	3873		
ECREPELGLEELLR	14	Unmodified	_ECREPELGLEELLR_			0	0	1	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.629571	1741.86688	-1.4238	-0.00082812	-1.5193	-0.00088366	-2.9431	-0.0017118	581.628853133066	14.604	0.21281	14.604	14.533	14.746	0	759	37	0.814815566123307	0.0245045030583653	0.814815566123307	493.411727470304	0	14.8387066810155						689	25	4	NaN	NaN	NaN	1.5453E-05	1	25652	106.11	95.862	1	201150			3874	3134	3292	3365	3874	3874		
ECREPELGLEELLR	14	Unmodified	_ECREPELGLEELLR_			0	0	1	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.629571	1741.86688	-0.73846	-0.00042951	-0.93818	-0.00054568	-1.6766	-0.00097519	581.62896724099	14.648	0.28374	14.648	14.515	14.799	0	693	34	0.85967808974117	0.0223985529654932	0.85967808974117	520.578235143828	0	13.5634481228464						366	33	3	NaN	NaN	NaN	2.5989E-11	1	25653	102.03	88.854	1	81440			3875	3134	3292	3365	3875	3875		
ECSLQVPEDELVSTLK	16	Unmodified	_ECSLQVPEDELVSTLK_			0	0	0	P11441	P11441	P11441	UBL4A	Ubiquitin-like protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.958774	1845.90299	1.7442	0.0016116	0.053624	4.9546E-05	1.7978	0.0016611	923.958815040681	14.631	0.14189	14.631	14.568	14.71	0	219	43	1.17788915118882	0.0278937633686938	1.17788915118882	475.304498912234	0	11.2557545906187						414	17	3	NaN	NaN	NaN	2.3383E-06	1	28381	80.815	74.787	1	132590			3876	654	3293	3366	3876	3876		
EDAANNYAR	9	Unmodified	_EDAANNYAR_			0	0	0	P68363;A6NHL2;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBAL3;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.228145	1022.44174	0.44916	0.00023007	0.65994	0.00033804	1.1091	0.00056811	512.228587679686	2.0734	0.26601	2.0734	2.0468	2.3128	0	729	25	0.835224628594324	0.0163136366798808	0.835224628594324	339.048435313277	0	6.62230590576775						322	31	3	NaN	NaN	NaN	9.8885E-05	1	4785	108.92	85.349	1	74291			3877	1447;2696;1448	3294	3367	3877	3877		
EDAEAPGIRDHESL	14	Unmodified	_EDAEAPGIRDHESL_			0	0	1	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.857709	1537.70086	2.5028	0.0019268	-4.5011	-0.0034652	-1.9982	-0.0015383	769.856785146056	5.8687	0.23946	5.8687	5.8066	6.0461	0	402	106	1.05585747106793	0.0703662562096516	1.05585747106793	426.698317460499	0	28.4367577569766						1835	28	6	NaN	NaN	NaN	0.0019413	1	19650	101.48	95.218	1	647750			3878	1201	3295	3368	3878	3878		
EDAFYSWESSK	11	Unmodified	_EDAFYSWESSK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.788232	1347.56191	1.0062	0.00067896	0.26206	0.00017684	1.2682	0.0008558	674.788346228583	10.259	0.15962	10.259	10.223	10.383	0	543	37	0.961130371139249	0.0242643069631547	0.961130371139249	388.905330095095	0	9.81814600016139						405	19	4	NaN	NaN	NaN	5.1229E-05	1	13815	114.39	104.31	1	139560			3879	1544	3296	3369	3879	3879		
EDAGDNDDTEGAIGVR	16	Unmodified	_EDAGDNDDTEGAIGVR_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.350445	1632.68634	2.2219	0.001816	-0.85072	-0.00069533	1.3711	0.0011207	817.349712068365	5.5317	0.097533	5.5317	5.5051	5.6026	0	435	40	1.03374239103424	0.0261540485744427	1.03374239103424	417.544116240217	0	10.564014006617						227	12	3	NaN	NaN	NaN	9.416E-09	1	22556	123.92	103.59	1	46706			3880	2849	3297	3370	3880	3880		
EDAIEHFMK	9	Unmodified	_EDAIEHFMK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.260599	1118.50665	1.0695	0.00059919	1.1026	0.00061772	2.172	0.0012169	560.261229064364	8.1124	0.1862	8.1124	8.077	8.2632	0	609	58	0.916577990479294	0.0385544403778527	0.916577990479294	371.647996055015	0	15.6328001046139						319	22	4	NaN	NaN	NaN	0.046415	1	7217	46.447	34.38	1	141190			3881	611	3298	3371	3881	3881		
EDALICFEEHIR	12	Unmodified	_EDALICFEEHIR_			0	0	0	O75400;Q6NWY9	O75400	O75400	PRPF40A;PRPF40B	Pre-mRNA-processing factor 40 homolog A;Pre-mRNA-processing factor 40 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.245169	1530.71368	-1.4592	-0.00074598	0.034239	1.7504E-05	-1.4249	-0.00072848	511.244893632426	13.052	0.088652	13.052	13.026	13.114	0	738	22	0.829104889055312	0.0142813781161694	0.829104889055312	502.610409011899	0	8.6574924246317						136	11	3	NaN	NaN	NaN	0.0044855	1	19450	32.14	30.884	1	27579			3882	332	3299	3372	3882	3882		
EDAMAMVDHCLK	12	Unmodified	_EDAMAMVDHCLK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.306897	1418.59924	2.4626	0.0017492	-0.57083	-0.00040546	1.8917	0.0013437	710.30694871963	9.709	0.12416	9.709	9.6558	9.78	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	421.327766978039	0	8.94641561973623						435	15	5	NaN	NaN	NaN	7.3347E-09	1	16044	144.47	88.094	1	216910			3883	1062	3300	3373	3883	3883		
EDAPIGPHLQSMPSEQIR	18	Unmodified	_EDAPIGPHLQSMPSEQIR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.998435	2003.97347	0.60173	0.00040256	-0.16227	-0.00010856	0.43946	0.000294	669.332768113155	9.5672	0.1596	9.5672	9.514	9.6736	0	639	58	0.896281965493857	0.0386025930625213	0.896281965493857	542.183440280011	0	23.3516767224415						749	19	5	NaN	NaN	NaN	2.1447E-14	1	31703	196.42	189.57	1	353960			3884	1728	3301	3374	3884	3884		
EDAQVAAEILEIADTPSGDK	20	Unmodified	_EDAQVAAEILEIADTPSGDK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1036.50513	2070.99571	0.33097	0.00034305	1.3167	0.0013647	1.6476	0.0017078	1037.0077335369	16.901	0.12419	16.901	16.839	16.963	0	123	79	1.24149774378079	0.0516181928902155	1.24149774378079	500.565657776988	0	20.8121962418261						752	15	5	NaN	NaN	NaN	9.206E-12	1	32887	159.83	153.63	1	213470			3885	573	3302	3375	3885	3885		
EDAVLEYLK	9	Unmodified	_EDAVLEYLK_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.284597	1078.55464	0.22055	0.00011916	-2.237	-0.0012086	-2.0164	-0.0010894	540.284142794732	12.192	0.24831	12.192	12.05	12.298	0	636	37	0.898312834727904	0.0243721251806781	0.898312834727904	364.406175155616	0	9.88670380090349						368	29	4	NaN	NaN	NaN	0.0004641	1	6176	81.642	67.107	1	101000			3886	846	3303	3376	3886	3886		
EDAVLYLLEIPK	12	Unmodified	_EDAVLYLLEIPK_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.895043	1401.77553	0.51912	0.00036437	-1.6075	-0.0011283	-1.0884	-0.00076393	701.894356206803	18.71	0.14189	18.71	18.665	18.807	0	459	40	1.01763759082241	0.0261829569110703	1.01763759082241	411.608319629018	0	10.5903349033865						368	17	3	NaN	NaN	NaN	0.00021574	1	15521	92.445	84.443	1	74094			3887	3196	3304	3377	3887	3887		
EDCEQWWEDCR	11	Unmodified	_EDCEQWWEDCR_			0	0	0	P15328	P15328	P15328	FOLR1	Folate receptor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.793197	1611.57184	1.8862	0.0015218	-0.096166	-7.7586E-05	1.7901	0.0014442	806.793351030152	10.232	0.133	10.232	10.179	10.312	0	438	40	1.03173026378327	0.0261576594975734	1.03173026378327	416.777319600274	0	10.5666370320852						453	16	5	NaN	NaN	NaN	2.2053E-11	1	21935	130.79	126.81	1	154580			3888	711	3305	3378	3888	3888		
EDCSPDEFIDVIVGNR	16	Unmodified	_EDCSPDEFIDVIVGNR_			0	0	0	P55039	P55039	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.922723	1863.83089	0.81665	0.00076187	1.917	0.0017884	2.7337	0.0025503	933.426558648491	17.965	0.11526	17.965	17.912	18.027	0	297	28	1.12600091227925	0.0179946865546097	1.12600091227925	454.33383466362	0	7.26073563242215						203	14	3	NaN	NaN	NaN	4.5145E-12	1	28774	112.73	111.92	1	43209			3889	1263	3306	3379	3889	3889		
EDDLNSFNATDLK	13	Unmodified	_EDDLNSFNATDLK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.34136	1480.66817	1.9719	0.0014619	-1.4801	-0.0010972	0.49185	0.00036463	741.34230765879	10.427	0.25718	10.427	10.312	10.569	0	441	43	1.02971785871157	0.0281717327026458	1.02971785871157	416.27762572657	0	11.3888109280096						774	30	6	NaN	NaN	NaN	8.5193E-08	1	17910	139.78	125.32	1	388840			3890	614	3307	3380	3890	3890		
EDDRVAIHEAMEQQTISIAK	20	Unmodified	_EDDRVAIHEAMEQQTISIAK_			0	0	1	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.046113	2283.11651	1.3224	0.0010077	0.56302	0.00042905	1.8854	0.0014368	762.380575343285	9.7002	0.070933	9.7002	9.6824	9.7534	0	567	28	0.944945209309785	0.0182171330553085	0.944945209309785	571.14045338336	0	11.0107353633273						159	9	4	NaN	NaN	NaN	2.1084E-05	1	35495	52.773	52.338	1	33630			3891	951	3308	3381	3891	3891		
EDDVPQFTSAGENFDK	16	Unmodified	_EDDVPQFTSAGENFDK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.891945	1797.76934	2.393	0.0021534	2.0054	0.0018047	4.3984	0.0039581	900.395594483715	10.8	0.12413	10.8	10.738	10.862	0	306	34	1.12000185836644	0.0220025900053455	1.12000185836644	452.035918785434	0	8.8803075766607						312	15	3	NaN	NaN	NaN	0.00022618	1	27151	56.938	53.433	1	79343			3892	880	3309	3382	3892	3892		
EDDYESDAATIVQK	14	Unmodified	_EDDYESDAATIVQK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.357207	1582.69986	1.9298	0.0015291	-0.35894	-0.00028441	1.5708	0.0012447	792.357157055623	8.7245	0.13306	8.7245	8.6891	8.8221	0	417	34	1.04580932352505	0.0221150800336967	1.04580932352505	422.530359111584	0	8.93498699832105						278	16	3	NaN	NaN	NaN	1.3732E-11	1	21045	192.14	171.05	1	70296			3893	1991	3310	3383	3893	3893		
EDEEESLNEVGYDDIGGCR	19	Unmodified	_EDEEESLNEVGYDDIGGCR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.44494	2184.87534	1.9328	0.0021134	-0.17178	-0.00018783	1.761	0.0019256	1093.94646747221	10.693	0.088673	10.693	10.667	10.755	0	210	52	1.18386433251387	0.0338547216702811	1.18386433251387	477.162424540411	0	13.6453144424325						402	11	4	NaN	NaN	NaN	1.6847E-26	1	34516	164.3	163.03	1	102580			3894	1265	3311	3384	3894	3894		
EDEEESLNEVGYDDIGGCR	19	Unmodified	_EDEEESLNEVGYDDIGGCR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.299055	2184.87534	0.97534	0.00071132	1.1653	0.00084983	2.1406	0.0015612	729.300108839354	10.693	0.079815	10.693	10.658	10.738	0	498	40	0.991429299781895	0.0262409175570258	0.991429299781895	599.399036879729	0	15.8647527503796						190	10	3	NaN	NaN	NaN	0.029908	1	34517	38.839	38.272	1	35350			3895	1265	3311	3384	3895	3895		
EDEGEEAASPMLQIQR	16	Unmodified	_EDEGEEAASPMLQIQR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.914898	1801.81524	2.5876	0.0023338	-0.57186	-0.00051577	2.0158	0.0018181	901.914818376687	10.037	0.14185	10.037	9.9839	10.126	0	336	40	1.09998710857178	0.0260388926708219	1.09998710857178	443.950287047495	0	10.5091903218937						413	17	4	NaN	NaN	NaN	9.5014E-13	1	27253	145.95	139.92	1	93486			3896	1737	3312	3385	3896	3896		
EDEIPETVSLEMLDAAK	17	Unmodified	_EDEIPETVSLEMLDAAK_			0	0	0	Q96A26	Q96A26	Q96A26	FAM162A	Protein FAM162A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.456064	1888.89757	1.6789	0.0015873	3.1474	0.0029757	4.8263	0.004563	945.960306859497	16.51	0.31034	16.51	16.377	16.688	0	234	88	1.16792504164217	0.0578395624113213	1.16792504164217	471.203731507126	0	23.3355880430758						1807	36	6	NaN	NaN	NaN	0.00039139	1	29347	75.012	53.862	1	533450			3897	2467	3313	3386	3897	3897		
EDEISLEDLIER	12	Unmodified	_EDEISLEDLIER_			0	0	0	Q8WU90	Q8WU90	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.859386	1459.70422	0.27561	0.00020143	0.16792	0.00012273	0.44353	0.00032416	730.859591900327	16.333	0.19507	16.333	16.262	16.457	0	468	46	1.01159370163332	0.0302278047766038	1.01159370163332	409.005055711656	0	12.2216310330264						493	23	4	NaN	NaN	NaN	2.17E-07	1	17252	120.65	84.413	1	152180			3898	2364	3314	3387	3898	3898		
EDELWASFLNDVGPK	15	Unmodified	_EDELWASFLNDVGPK_			0	0	0	Q9UEE9	Q9UEE9	Q9UEE9	CFDP1	Craniofacial development protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.414859	1718.81517	1.5401	0.0013252	0.81647	0.00070251	2.3566	0.0020277	860.917026563759	19.038	0.070911	19.038	19.002	19.073	0	354	49	1.08796502040166	0.0320765843324038	1.08796502040166	439.260125294432	0	12.9507513464608						259	9	3	NaN	NaN	NaN	1.1717E-11	1	25022	145.95	114.52	1	63270			3899	3198	3315	3388	3899	3899		
EDENSWFNLFVIHQNR	16	Unmodified	_EDENSWFNLFVIHQNR_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.325539	2046.95479	-0.22044	-0.00015063	0.10112	6.9095E-05	-0.11932	-8.1534E-05	683.660028849814	17.734	0.062073	17.734	17.699	17.761	0	618	22	0.910492137470517	0.0142042621835186	0.910492137470517	550.700039274309	0	8.59127434538618						125	8	4	NaN	NaN	NaN	0.05742	1	32477	10.021	9.4541	1	22564			3900	1157	3316	3389	3900	3900		
EDEVDGEEQTQK	12	Unmodified	_EDEVDGEEQTQK_			0	0	0	Q9UEE9	Q9UEE9	Q9UEE9	CFDP1	Craniofacial development protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.799525	1405.5845	2.553	0.0017968	-1.3504	-0.00095043	1.2026	0.00084636	703.798745787194	2.3306	0.062069	2.3306	2.2951	2.3572	0	570	22	0.942920803299286	0.0141708428887385	0.942920803299286	381.377197304905	0	5.73159095169507						85	8	2	NaN	NaN	NaN	4.5713E-05	1	15627	116.13	103.54	1	15912			3901	3198	3317	3390	3901	3901		
EDEVEEWQHR	10	Unmodified	_EDEVEEWQHR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.865346	1355.57421	-0.16704	-7.5645E-05	-0.21065	-9.5394E-05	-0.37768	-0.00017104	452.865146701468	5.1238	0.10641	5.1238	5.0883	5.1947	0	831	22	0.76571780291124	0.0143431242639176	0.76571780291124	464.720983684276	0	8.70497041036697						161	13	3	NaN	NaN	NaN	0.01128	1	14052	58.426	45.152	1	38946			3902	710	3318	3391	3902	3902		
EDEVQAIATLIEK	13	Unmodified	_EDEVQAIATLIEK_			0	0	0	Q96MW1	Q96MW1	Q96MW1	CCDC43	Coiled-coil domain-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.887946	1457.76134	0.28309	0.00020663	3.3954	0.0024782	3.6784	0.0026849	730.392603679391	17.122	0.16846	17.122	17.069	17.238	0	465	43	1.01360860968299	0.0282028744341156	1.01360860968299	409.824834228534	0	11.4030585665058						496	20	4	NaN	NaN	NaN	0.007783	1	17204	51.454	36.306	1	129710			3903	2586	3319	3392	3903	3903		
EDFATFDYILCMDESNLR	18	Unmodified	_EDFATFDYILCMDESNLR_			0	0	0	P24666	P24666	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.98774	2237.96092	0.85484	0.00095741	0.56548	0.00063333	1.4203	0.0015907	1120.49108819347	19.446	0.053182	19.446	19.419	19.472	0	117	28	1.24546401832526	0.0178470139806191	1.24546401832526	501.91524397969	0	7.19224983186297						137	7	4	NaN	NaN	NaN	4.4322E-07	1	35071	90.156	82.949	1	23644			3904	831	3320	3393	3904	3904		
EDFDSLLQSAK	11	Unmodified	_EDFDSLLQSAK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.806425	1251.5983	2.014	0.0012624	0.50182	0.00031454	2.5158	0.0015769	626.806797294165	12.795	0.25726	12.795	12.733	12.99	1.7764E-15	519	46	0.97729762293174	0.0303031202144891	0.97729762293174	395.754802366438	0	12.2711905464331						744	30	4	NaN	NaN	NaN	7.5017E-24	1	10956	244.81	207.09	1	724770			3905	576	3321	3394	3905	3905		
EDFEWVYTDQPHADR	15	Unmodified	_EDFEWVYTDQPHADR_			0	0	0	O15121	O15121	O15121	DEGS1	Sphingolipid delta(4)-desaturase DES1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.611345	1906.81221	0.67253	0.00042814	1.1324	0.00072087	1.8049	0.001149	636.946497817689	11.101	0.10643	11.101	11.066	11.172	0	633	31	0.900343422309015	0.0203072864196308	0.900343422309015	544.830990429287	0	12.2886875149972						290	13	4	NaN	NaN	NaN	7.9029E-07	1	29731	117.21	114.91	1	66824			3906	146	3322	3395	3906	3906		
EDFLNICIEPDTISK	15	Unmodified	_EDFLNICIEPDTISK_			0	0	0	Q53H12	Q53H12	Q53H12	AGK	Acylglycerol kinase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.434935	1792.85532	1.1065	0.00099298	-2.3743	-0.0021308	-1.2678	-0.0011378	897.934181323212	16.298	0.16845	16.298	16.245	16.413	0	297	46	1.12600091227925	0.0299911493699134	1.12600091227925	454.466703744675	0	12.1047670983401						530	20	5	NaN	NaN	NaN	0.00031298	1	27043	63.908	24.616	1	103010			3907	1950	3323	3396	3907	3907		
EDFSDMVAEHAAK	13	Unmodified	_EDFSDMVAEHAAK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.882008	1448.62419	-0.90043	-0.0004357	0.50908	0.00024633	-0.39136	-0.00018937	483.881905154626	8.5116	0.15074	8.5116	8.414	8.5648	0	756	25	0.816857749704129	0.0163363337922245	0.816857749704129	495.437165763364	0	9.90824524333095						138	18	3	NaN	NaN	NaN	0.058453	1	16927	31.425	29.781	1	34534			3908	1667	3324	3397	3908	3908		
EDFSDMVAEHAAK	13	Unmodified	_EDFSDMVAEHAAK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.319373	1448.62419	1.7486	0.0012683	0.26691	0.0001936	2.0155	0.0014619	725.319592167495	8.5205	0.09755	8.5205	8.485	8.5825	0	393	31	1.0618830335572	0.0200810554330217	1.0618830335572	429.368744584113	0	8.11970555016518						225	12	4	NaN	NaN	NaN	0.0011303	1	16928	75.474	72.129	1	58662			3909	1667	3324	3397	3909	3909		
EDGAISTIVLR	11	Unmodified	_EDGAISTIVLR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.327328	1172.6401	1.634	0.00095968	0.68794	0.00040404	2.3219	0.0013637	587.328384389129	10.977	0.3281	10.977	10.897	11.225	0	597	55	0.924688525662974	0.0364771975402507	0.924688525662974	374.725825436184	0	14.782218637426						816	38	4	NaN	NaN	NaN	0.050778	1	8681	43.272	24.936	1	637190			3910	1174	3325	3398	3910	3910		
EDGLAQQQTQLNLR	14	Unmodified	_EDGLAQQQTQLNLR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.415725	1612.8169	2.9266	0.002363	-0.29206	-0.00023582	2.6345	0.0021272	807.416323629332	8.3342	0.27503	8.3342	8.2454	8.5205	0	381	70	1.06991323971056	0.0461705299793509	1.06991323971056	432.198855805642	0	18.6509050345183						1337	32	6	NaN	NaN	NaN	2.6529E-11	1	21977	168.05	121.98	1	1077600			3911	1127	3326	3399	3911	3911		
EDGMVPFVFVGTK	13	Unmodified	_EDGMVPFVFVGTK_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.35777	1424.70099	0.79686	0.00056844	-1.2715	-0.00090706	-0.47469	-0.00033862	713.356911334214	16.253	0.2394	16.253	16.156	16.395	0	486	61	0.999498404980629	0.0403121021954936	0.999498404980629	404.207928913098	0	16.3026486659471						879	28	4	NaN	NaN	NaN	0.00028347	1	16222	71.066	65.57	1	285960			3912	1178	3327	3400	3912	3912		
EDGPGIPADIK	11	Unmodified	_EDGPGIPADIK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.285128	1110.5557	0.63056	0.00035077	-0.8692	-0.00048352	-0.23864	-0.00013275	556.284437259171	7.4738	0.20392	7.4738	7.3762	7.5801	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	359.330787960489	0	9.89134014907046						410	24	4	NaN	NaN	NaN	0.0004332	1	6999	92.428	68.852	1	174940			3913	2605	3328	3401	3913	3913		
EDGPSVFGSFFLQHCVTMNTPVEK	24	Unmodified	_EDGPSVFGSFFLQHCVTMNTPVEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	909.424484	2725.25162	0.55202	0.00050202	0.85637	0.0007788	1.4084	0.0012808	909.75970622826	17.184	0.22168	17.184	17.105	17.326	0	465	34	1.01360860968299	0.022160929987054	1.01360860968299	612.040526857644	0	13.3812865590929						699	26	6	NaN	NaN	NaN	0.014211	1	37676	23.53	23.317	1	188220			3914	1055	3329	3402	3914	3914		
EDGSEVGVGGAQVTGSNTR	19	Unmodified	_EDGSEVGVGGAQVTGSNTR_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.424475	1818.8344	1.9083	0.0017374	-1.7989	-0.0016378	0.10941	9.9605E-05	910.423099861083	5.3544	0.044327	5.3544	5.3366	5.381	0	369	28	1.07793901817685	0.0180517806910934	1.07793901817685	435.020678797979	0	7.28510403402368						99	6	3	NaN	NaN	NaN	1.6587E-07	1	27678	108.34	99.585	1	15435			3915	1695	3330	3403	3915	3915		
EDGSGDRGDGPFR	13	Unmodified	_EDGSGDRGDGPFR_			0	0	1	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	455.532366	1363.57527	0.10971	4.9975E-05	0.51258	0.0002335	0.62229	0.00028347	455.532643060832	3.1464	0.31034	3.1464	3.0311	3.3415	0	861	25	0.745211914437924	0.0164161478331188	0.745211914437924	452.249024416561	0	9.96251763876552						431	36	3	NaN	NaN	NaN	0.00042264	1	14290	85.622	71.627	1	71646			3916	674	3331	3404	3916	3916		
EDGTFYEFGEDIPEAPER	18	Unmodified	_EDGTFYEFGEDIPEAPER_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.95527	2099.896	2.78	0.0029216	-0.81818	-0.00085987	1.9618	0.0020617	1051.45561052697	14.4	0.11526	14.4	14.365	14.48	0	210	79	1.18386433251387	0.0517956167571643	1.18386433251387	477.284407232545	0	20.8818186022153						783	14	4	NaN	NaN	NaN	1.5258E-07	1	33305	92.747	89.853	1	230880			3917	229	3332	3405	3917	3917		
EDGVLCCQGECQWLHLDLIK	20	Unmodified	_EDGVLCCQGECQWLHLDLIK_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.048472	2472.12359	0.74197	0.00061216	-0.53861	-0.00044438	0.20335	0.00016778	825.382837065179	16.493	0.10641	16.493	16.448	16.555	0	498	61	0.991429299781895	0.040367862489025	0.991429299781895	598.959181859195	0	24.3877217418833						565	13	5	NaN	NaN	NaN	1.8359E-07	1	36686	115.24	108.25	1	161150			3918	771	3333	3406	3918	3918		
EDGVTPYMIFFK	12	Unmodified	_EDGVTPYMIFFK_			0	0	0	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.852321	1445.69009	0.52043	0.00037671	0.16444	0.00011903	0.68487	0.00049574	723.852602759599	17.947	0.22165	17.947	17.876	18.098	0	489	67	0.997481546940468	0.0443555739559077	0.997481546940468	403.335969027241	0	17.9353677851378						963	26	4	NaN	NaN	NaN	3.5631E-07	1	16851	120.33	97.279	1	498930			3919	682	3334	3407	3919	3919		
EDIANLADEFK	11	Unmodified	_EDIANLADEFK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.806425	1263.5983	0.9948	0.00062951	4.3049	0.0027242	5.2997	0.0033537	632.807208928982	13.469	0.21282	13.469	13.434	13.646	0	540	40	0.963152256458504	0.0262845144362098	0.963152256458504	389.986229540408	0	10.6427603855378						168	25	2	NaN	NaN	NaN	0.0005389	1	11315	63.212	35.475	1	51520			3920	2674	3335	3408	3920	3920		
EDIEFICK	8	Unmodified	_EDIEFICK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.2497	1052.48485	0.035696	1.882E-05	0.26495	0.00013969	0.30064	0.00015851	527.249708780734	9.1238	0.15075	9.1238	9.0617	9.2125	0	696	34	0.857641857947968	0.0223985529654932	0.857641857947968	348.016386445794	0	9.08894941685389						246	18	3	NaN	NaN	NaN	0.013592	1	5522	67.903	53.367	1	67373			3921	1175	3336	3409	3921	3921		
EDIGVGSYSVCK	12	Unmodified	_EDIGVGSYSVCK_			0	0	0	P51812;Q15349;Q9UK32	P51812	P51812	RPS6KA3;RPS6KA2;RPS6KA6	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.305735	1312.59692	1.2625	0.00082983	1.2175	0.0008003	2.48	0.0016301	657.307047924618	7.9438	0.08869	7.9438	7.9172	8.0059	8.8818E-16	540	25	0.963152256458504	0.0161739645709869	0.963152256458504	389.828826216733	0	6.54629377826774						158	11	3	NaN	NaN	NaN	0.00056804	1	12722	70.389	62.832	1	38601			3922	1200	3337	3410	3922	3922		
EDILNYLEK	9	Unmodified	_EDILNYLEK_			0	0	0	P11182	P11182	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.795329	1135.5761	0.56489	0.00032131	-0.21624	-0.00012299	0.34866	0.00019831	568.795139872263	14.054	0.1064	14.054	14.019	14.125	0	591	31	0.928742107665821	0.0202651042983174	0.928742107665821	376.511311647753	0	8.21545716196107						218	13	3	NaN	NaN	NaN	0.0074406	1	7687	69.716	48.441	1	52823			3923	645	3338	3411	3923	3923		
EDILYHFNLTTSR	13	Unmodified	_EDILYHFNLTTSR_			0	0	0	Q16831	Q16831	Q16831	UPP1	Uridine phosphorylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.904462	1607.79437	2.2352	0.0017991	-1.7444	-0.0014041	0.49076	0.00039502	804.903957510087	12.76	0.2838	12.76	12.697	12.981	0	375	37	1.07392668217569	0.024074020010092	1.07392668217569	433.831658658406	0	9.72512575103832						376	33	4	NaN	NaN	NaN	0.039775	1	21850	21.361	19.06	1	72194			3924	1909	3339	3412	3924	3924		
EDINAIEMEEDKR	13	Unmodified	_EDINAIEMEEDKR_			0	0	1	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.367052	1590.71955	2.3377	0.0018616	-0.47778	-0.00038049	1.8599	0.0014811	796.366486901996	6.7732	0.12412	6.7732	6.7289	6.853	-8.8818E-16	372	34	1.07593298845566	0.0220663300779218	1.07593298845566	434.681983673797	0	8.91490105200637						291	15	3	NaN	NaN	NaN	4.2427E-07	1	21290	160.62	146.82	1	90334			3925	1147	3340	3413	3925	3925		
EDIQSVMTEIR	11	Unmodified	_EDIQSVMTEIR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.826834	1319.63912	0.95021	0.00062792	-1.3384	-0.00088444	-0.38817	-0.00025651	660.825670349809	12.626	0.28377	12.626	12.511	12.795	0	537	43	0.965173861991602	0.0283005258697965	0.965173861991602	390.625351218291	0	11.4537942777897						628	33	4	NaN	NaN	NaN	2.6113E-05	1	12958	90.142	70.886	1	233570			3926	1240	3341	3414	3926	3926		
EDIYAVEIVGGATR	14	Unmodified	_EDIYAVEIVGGATR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.885738	1491.75692	2.2341	0.0016687	-1.8006	-0.0013449	0.43351	0.00032378	746.884606961533	12.857	0.20403	12.857	12.786	12.99	0	447	115	1.02569221487577	0.0763713187683328	1.02569221487577	414.621664932148	0	30.8720324494469						711	24	5	NaN	NaN	NaN	0.01416	1	18298	50.116	47.014	1	248410			3927	955	3342	3415	3927	3927		
EDIYSGGGGGGSR	13	Unmodified	_EDIYSGGGGGGSR_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.267998	1210.52144	1.7406	0.0010553	-6.8749	-0.004168	-5.1343	-0.0031127	606.764110333366	3.1198	0.34581	3.1198	3.0666	3.4124	0	654	61	0.886123392477847	0.0406202211384199	0.886123392477847	358.96683019185	0	16.4551710828637						831	40	4	NaN	NaN	NaN	0.005578	1	9738	43.306	37.558	1	260670			3928	1635	3343	3416	3928	3928		
EDKYEEEIK	9	Unmodified	_EDKYEEEIK_			0	0	1	CON__Q3SX28;P07951;P06753;P67936	CON__Q3SX28;P06753;P67936	P67936	TPM2;TPM3;TPM4	Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.779876	1181.5452	2.3993	0.0014198	0.077173	4.567E-05	2.4765	0.0014655	591.779890084528	3.4567	0.28386	3.4567	3.4213	3.7051	0	576	40	0.938871150116794	0.0263318671085498	0.938871150116794	380.439931058068	0	10.6699345337864						519	33	4	NaN	NaN	NaN	0.0062431	1	8910	97.277	63.882	1	267910		+	3929	1443;41;548	3344	3417	3929	3929		
EDLAAFVEELDK	12	Unmodified	_EDLAAFVEELDK_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.840465	1377.66638	0.45602	0.00031458	-1.1858	-0.000818	-0.72976	-0.00050342	689.839565870853	17.832	0.1241	17.832	17.787	17.912	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	396.993360898065	0	8.98615143881131						268	15	4	NaN	NaN	NaN	0.00035937	1	14731	58.889	49.912	1	84735			3930	1534	3345	3418	3930	3930		
EDLEEWVTIGR	11	Unmodified	_EDLEEWVTIGR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.832974	1345.6514	-0.31638	-0.00021318	-0.52765	-0.00035555	-0.84402	-0.00056873	673.83247132311	14.861	0.11527	14.861	14.817	14.932	0	555	40	0.953040030838688	0.0262954306323098	0.953040030838688	385.637270753658	0	10.6401596724245						263	14	4	NaN	NaN	NaN	0.00043816	1	13772	90.263	76.268	1	60625			3931	2356	3346	3419	3931	3931		
EDLESSGLQR	10	Unmodified	_EDLESSGLQR_			0	0	0	Q9UK76	Q9UK76	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.275292	1132.53603	1.8925	0.0010736	-3.1564	-0.0017905	-1.2638	-0.00071694	567.274726583492	4.8578	0.28373	4.8578	4.7691	5.0529	0	627	73	0.90440375274676	0.0486969825193961	0.90440375274676	366.656380385666	0	19.7423543323857						504	33	2	NaN	NaN	NaN	0.0035949	1	7593	58.916	5.2364	1	263490			3932	3257	3347	3420	3932	3932		
EDLHILFSNHGEIK	14	Unmodified	_EDLHILFSNHGEIK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.286133	1650.83657	-0.1574	-8.6772E-05	-0.76541	-0.00042196	-0.92281	-0.00050873	551.619786310378	10.046	0.11527	10.046	10.002	10.117	0	708	55	0.849494101904619	0.0366598233123934	0.849494101904619	514.634961579096	0	22.2090144234907						235	14	2	NaN	NaN	NaN	0.038097	1	23077	41.317	31.575	1	81866			3933	533	3348	3421	3933	3933		
EDLHILFSNHGEIK	14	Unmodified	_EDLHILFSNHGEIK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.425562	1650.83657	2.5171	0.0020802	-0.43463	-0.00035919	2.0824	0.001721	826.425512943248	10.046	0.070926	10.046	10.019	10.09	0	327	28	1.10599442759226	0.0180219585997581	1.10599442759226	446.686473475967	0	7.27866699073786						121	9	3	NaN	NaN	NaN	0.00022316	1	23079	63.908	41.905	1	20169			3934	533	3348	3421	3934	3934		
EDLIIPHHHSFYDFIVTK	18	Unmodified	_EDLIIPHHHSFYDFIVTK_			0	0	0	Q14320	Q14320	Q14320	FAM50A	Protein FAM50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.712623	2210.11604	0.6331	0.00046704	-2.6567	-0.0019599	-2.0236	-0.0014928	738.045558021633	13.283	0.17738	13.283	13.238	13.416	0	588	61	0.93076847747433	0.0405133818697153	0.93076847747433	562.684118495145	0	24.4918442301316						756	21	5	NaN	NaN	NaN	9.0754E-11	1	34791	113.86	103.95	1	257730			3935	1747	3349	3422	3935	3935		
EDLISAFGTDDQTEICK	17	Unmodified	_EDLISAFGTDDQTEICK_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.440945	1940.86734	2.799	0.0027191	-0.019203	-1.8654E-05	2.7798	0.0027004	971.441099530695	13.859	0.12412	13.859	13.806	13.93	0	240	58	1.16393748060522	0.0378844489628292	1.16393748060522	469.50325046247	0	15.2816385986463						384	15	4	NaN	NaN	NaN	1.0797E-13	1	30524	135.21	127.63	1	108120			3936	3376	3350	3423	3936	3936		
EDLKEEEEGKEEDEIK	16	Unmodified	_EDLKEEEEGKEEDEIK_			0	0	2	P82970	P82970	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.300502	1947.87968	2.0537	0.0013355	0.17552	0.00011414	2.2292	0.0014497	650.300175240028	4.3347	0.062082	4.3347	4.3081	4.3701	0	585	22	0.932794566565362	0.0141806598395486	0.932794566565362	564.382486085748	0	8.57993425503082						95	8	3	NaN	NaN	NaN	0.011206	1	30671	41.87	32.291	1	18954			3937	1479	3351	3424	3937	3937		
EDLLQHFSTANQGPK	15	Unmodified	_EDLLQHFSTANQGPK_			0	0	0	Q9P2N5	Q9P2N5	Q9P2N5	RBM27	RNA-binding protein 27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.281159	1683.82165	-1.2414	-0.00069801	-0.4912	-0.00027619	-1.7326	-0.0009742	562.280950938452	9.5317	0.133	9.5317	9.4962	9.6292	0	759	28	0.814815566123307	0.0183796540051641	0.814815566123307	493.545843453215	0	11.1328283546613						176	16	3	NaN	NaN	NaN	1.9735E-06	1	24010	103.69	91.003	1	43404			3938	3163	3352	3425	3938	3938		
EDLMGLAIGTHGANIQQAR	19	Unmodified	_EDLMGLAIGTHGANIQQAR_			0	0	0	Q06787;P51116	Q06787	Q06787	FMR1;FXR2	Fragile X mental retardation protein 1;Fragile X mental retardation syndrome-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.007455	1994.00036	0.75966	0.00075815	-2.0889	-0.0020847	-1.3292	-0.0013266	998.50696078994	12.174	0.079808	12.174	12.139	12.219	0	96	58	1.2593374219024	0.0376409208271831	1.2593374219024	507.889097293527	0	15.1805330070599						418	10	4	NaN	NaN	NaN	4.5449E-05	1	31525	85.081	70.718	1	84546			3939	1563	3353	3426	3939	3939		
EDLMGLAIGTHGSNIQQAR	19	Unmodified	_EDLMGLAIGTHGSNIQQAR_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.005701	2009.99527	0.7719	0.00051795	0.30081	0.00020185	1.0727	0.0007198	671.338917431944	11.571	0.13306	11.571	11.474	11.607	0	504	67	0.987393073566096	0.0444538139384744	0.987393073566096	597.286534499304	0	26.8906732115241						388	16	4	NaN	NaN	NaN	4.0017E-05	1	31802	61.23	46.836	1	110600			3940	1178	3354	3427	3940	3940		
EDLMGLAIGTHGSNIQQAR	19	Unmodified	_EDLMGLAIGTHGSNIQQAR_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.00491	2009.99527	0.61135	0.00061502	0.42957	0.00043215	1.0409	0.0010472	1006.50683855114	11.571	0.062119	11.571	11.545	11.607	0	90	58	1.26329880838669	0.0376357649145351	1.26329880838669	509.458680760568	0	15.177618323934						332	8	4	NaN	NaN	NaN	1.936E-07	1	31803	101.43	92.272	1	62236			3941	1178	3354	3427	3941	3941		
EDLNCQEEEDPMNK	14	Unmodified	_EDLNCQEEEDPMNK_			0	0	0	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.848366	1749.68218	3.3635	0.0029459	-2.6495	-0.0023206	0.71398	0.00062534	875.84646287887	5.7091	0.26609	5.7091	5.6381	5.9041	0	381	49	1.06991323971056	0.0321164047126832	1.06991323971056	431.91085743426	0	12.9649988263659						1067	31	6	NaN	NaN	NaN	3.0189E-45	1	25865	285.5	270.35	1	448270			3942	362	3355	3428	3942	3942		
EDLNCQEEEDPMNK	14	Oxidation (M)	_EDLNCQEEEDPM(Oxidation (M))NK_	EDLNCQEEEDPM(1)NK	EDLNCQEEEDPM(200)NK	0	1	0	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.845823	1765.67709	3.7364	0.0033024	-2.9866	-0.0026397	0.74979	0.0006627	883.842911012914	3.776	0.15072	3.776	3.6785	3.8292	0	381	25	1.06991323971056	0.0160604132229905	1.06991323971056	431.880099536237	0	6.48293020770041						151	18	3	NaN	NaN	NaN	6.8008E-17	1	26281	201.66	200.78	1	28240			3943	362	3355	3429	3943	3943	59	
EDLQELNDR	9	Unmodified	_EDLQELNDR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.267467	1130.52038	1.3426	0.00076029	2.2134	0.0012534	3.5561	0.0020137	566.268676525672	5.4076	0.31917	5.4076	5.2835	5.6026	0	624	67	0.906433495720521	0.0446574674330033	0.906433495720521	367.487119022601	0	18.1050723823428						1323	37	6	NaN	NaN	NaN	0.00010345	1	7535	114.64	34.829	1	1065600			3944	493	3356	3430	3944	3944		
EDLQLWCHK	9	Unmodified	_EDLQLWCHK_			0	0	0	Q6UWP7	Q6UWP7	Q6UWP7	LCLAT1	Lysocardiolipin acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.792598	1227.57064	1.3652	0.00083929	-1.5147	-0.00093121	-0.14951	-9.1918E-05	614.792028711236	7.9704	0.14189	7.9704	7.8995	8.0414	0	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.275271167586	0	7.38163471007994						193	17	3	NaN	NaN	NaN	0.00084299	1	10221	87.251	68.848	1	44007			3945	2088	3357	3431	3945	3945		
EDLRLPEGDLGK	12	Unmodified	_EDLRLPEGDLGK_			0	0	1	P63241	P63241	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.905141	1340.69359	-0.76411	-0.00034225	-1.7899	-0.00080171	-2.554	-0.001144	447.904397522358	8.6446	0.2751	8.6446	8.5648	8.8399	0	843	31	0.757518876820989	0.0205058884733159	0.757518876820989	459.796416139894	0	12.4465994423306						569	32	4	NaN	NaN	NaN	0.00037409	1	13621	87.942	50.219	1	241790			3946	1434	3358	3432	3946	3946		
EDLRLPEGDLGK	12	Unmodified	_EDLRLPEGDLGK_			0	0	1	P63241	P63241	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.354074	1340.69359	1.8316	0.0012297	0.76318	0.00051236	2.5948	0.001742	671.354879099824	8.6446	0.33715	8.6446	8.5559	8.8931	0	534	46	0.967195187796614	0.0303198952028392	0.967195187796614	391.379708679493	0	12.2690765022451						991	39	4	NaN	NaN	NaN	9.3861E-10	1	13627	168.05	118.09	1	1074200			3947	1434	3358	3432	3947	3947		
EDLSGIAEMFK	11	Unmodified	_EDLSGIAEMFK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.299921	1238.58529	0.64151	0.00039793	-0.84206	-0.00052233	-0.20055	-0.0001244	620.299211668413	16.165	0.12414	16.165	16.111	16.236	0	573	37	0.940896116921038	0.0242979231728671	0.940896116921038	381.057763157117	0	9.84052552359839						295	15	4	NaN	NaN	NaN	0.00088533	1	10568	69.915	55.92	1	95354			3948	1074	3359	3433	3948	3948		
EDLSGTQAGLNVIK	14	Unmodified	_EDLSGTQAGLNVIK_			0	0	0	P57076	P57076	P57076	C21orf59	UPF0769 protein C21orf59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.885738	1443.75692	2.1204	0.0015328	-3.793	-0.0027419	-1.6725	-0.0012091	722.88222819254	9.8509	0.19507	9.8509	9.7622	9.9573	0	459	34	1.01763759082241	0.0221548084259287	1.01763759082241	411.491390058879	0	8.95850644462342						316	23	4	NaN	NaN	NaN	1.466E-05	1	16786	125.17	118.42	1	114750			3949	1291	3360	3434	3949	3949		
EDLTEIRDMLLANK	14	Unmodified	_EDLTEIRDMLLANK_			0	0	1	P05388;Q8NHW5	P05388	P05388	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.290667	1659.85017	-0.79225	-0.00043913	-3.7154	-0.0020594	-4.5076	-0.0024985	554.622271482742	15.411	0.15086	15.411	15.375	15.526	0	738	67	0.829104889055312	0.0448562890610408	0.829104889055312	502.260239588634	0	27.1733176203143						604	18	4	NaN	NaN	NaN	6.9845E-06	1	23341	120.65	111.39	1	184160			3950	530	3361	3435	3950	3950		
EDLTEIRDMLLANK	14	Unmodified	_EDLTEIRDMLLANK_			0	0	1	P05388;Q8NHW5	P05388	P05388	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.932362	1659.85017	2.3989	0.0019934	-0.62508	-0.0005194	1.7739	0.001474	830.932094033754	15.411	0.19521	15.411	15.349	15.544	0	306	37	1.12000185836644	0.0239978708876349	1.12000185836644	452.323318088339	0	9.69176658580074						402	23	3	NaN	NaN	NaN	1.3728E-05	1	23344	83.214	53.897	1	149030			3951	530	3361	3435	3951	3951		
EDMAALEK	8	Unmodified	_EDMAALEK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.715493	905.416433	-0.18016	-8.1742E-05	0.77647	0.0003523	0.59631	0.00027055	453.71619569714	4.7337	0.23055	4.7337	4.6716	4.9021	0	771	61	0.806643990516186	0.0408578970116692	0.806643990516186	328.00801479825	0	16.6141666524447						749	27	5	NaN	NaN	NaN	0.0034709	1	2414	69.905	38.846	1	404770			3952	1447;2696;1448	3362	3436	3952	3952		
EDMSGYTIYDTSTDR	15	Unmodified	_EDMSGYTIYDTSTDR_			0	0	0	Q96AZ6	Q96AZ6	Q96AZ6	ISG20	Interferon-stimulated gene 20 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.364706	1752.71486	1.96	0.0017196	2.2623	0.0019849	4.2223	0.0037045	877.366438017912	9.4519	0.053223	9.4519	9.4253	9.4785	0	327	22	1.10599442759226	0.0140151480609543	1.10599442759226	446.470300353969	0	5.65766626682006						105	7	3	NaN	NaN	NaN	1.7965E-06	1	25961	99.589	94.76	1	18355			3953	2477	3363	3437	3953	3953		
EDPDMASAVAAIR	13	Unmodified	_EDPDMASAVAAIR_			0	0	0	Q14232	Q14232	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.324459	1344.63436	1.5527	0.0010455	-1.007	-0.00067803	0.54576	0.00036747	673.322461244931	11.03	0.23058	11.03	10.933	11.163	0	534	58	0.967195187796614	0.0384105216790265	0.967195187796614	391.368012182762	0	15.5425189311267						536	27	2	NaN	NaN	NaN	0.0073384	1	13727	40.533	33.383	1	174820			3954	1738	3364	3438	3954	3954		
EDPFVFIPEDDPLFPPIEK	19	Unmodified	_EDPFVFIPEDDPLFPPIEK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.55918	2243.1038	0.80471	0.00090334	-0.3654	-0.00041018	0.43932	0.00049316	1123.06008174076	19.995	0.13301	19.995	19.969	20.102	0	99	106	1.25735632164274	0.0693481083373293	1.25735632164274	506.700612211586	0	27.9465163099759						649	16	5	NaN	NaN	NaN	1.8561E-10	1	35132	104	97.143	1	230680			3955	1581	3365	3439	3955	3955		
EDPSGWWTGR	10	Unmodified	_EDPSGWWTGR_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.764894	1189.51524	0.38396	0.00022875	0.13162	7.8417E-05	0.51559	0.00030717	595.764972024038	10.693	0.1242	10.693	10.649	10.773	0	645	28	0.892219381832517	0.0182828962008553	0.892219381832517	361.508211914205	0	7.40783853026056						245	15	3	NaN	NaN	NaN	0.040324	1	9137	52.591	43.198	1	65382			3956	1611	3366	3440	3956	3956		
EDPTVSALLTSEK	13	Unmodified	_EDPTVSALLTSEK_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.359022	1388.70349	1.4641	0.0010181	0.84277	0.00058603	2.3069	0.0016041	695.359882362346	11.509	0.36362	11.509	11.429	11.793	0	459	55	1.01763759082241	0.036265853684099	1.01763759082241	411.646155815517	0	14.6699565651488						993	42	4	NaN	NaN	NaN	0.00019355	1	15103	90.306	84.043	1	728530			3957	1464	3367	3441	3957	3957		
EDPWNSITSGALTGAILAAR	20	Unmodified	_EDPWNSITSGALTGAILAAR_			0	0	0	Q99595	Q99595	Q99595	TIMM17A	Mitochondrial import inner membrane translocase subunit Tim17-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.02891	2042.04327	0.94885	0.00096975	-1.3934	-0.0014241	-0.44453	-0.00045432	1022.52933069229	19.357	0.079822	19.357	19.33	19.41	0	180	58	1.203763835057	0.0377649812720997	1.203763835057	485.39737224144	0	15.2280888812018						329	10	3	NaN	NaN	NaN	1.941E-05	1	32385	61.23	59.959	1	66295			3958	2655	3368	3442	3958	3958		
EDQPAVPGETQGDSYFTGK	19	Unmodified	_EDQPAVPGETQGDSYFTGK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.45544	2024.89633	1.9795	0.0020061	-0.3252	-0.00032957	1.6543	0.0016765	1013.95671645199	9.514	0.18621	9.514	9.4519	9.6381	0	240	58	1.16393748060522	0.0378896560642905	1.16393748060522	469.364904559119	0	15.2792354389569						852	22	4	NaN	NaN	NaN	6.6917E-05	1	32052	77.431	72.615	1	205810			3959	3308	3369	3443	3959	3959		
EDQPQGLVPGGAVVVLSGPHR	21	Unmodified	_EDQPQGLVPGGAVVVLSGPHR_			0	0	0	Q92917	Q92917	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.711393	2111.11235	1.8633	0.0013131	0.83792	0.00059049	2.7012	0.0019036	705.046564771511	12.671	0.21284	12.671	12.609	12.822	0	420	37	1.04379886199097	0.0241272072846639	1.04379886199097	631.199825006789	0	14.5900609499938						502	25	4	NaN	NaN	NaN	0.010077	1	33479	73.262	73.262	1	128800			3960	2444	3370	3444	3960	3960		
EDQSILCTGESGAGK	15	Unmodified	_EDQSILCTGESGAGK_			0	0	0	P35579;P35580;P35749;Q7Z406	P35579	P35579	MYH9;MYH10;MYH11;MYH14	Myosin-9;Myosin-10;Myosin-11;Myosin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.351402	1550.68825	2.0936	0.0016253	-1.3609	-0.0010566	0.73262	0.00056877	776.350686594661	6.2678	0.25717	6.2678	6.2146	6.4717	0	450	46	1.02367897599655	0.030194421347751	1.02367897599655	413.663257264977	0	12.2014058887773						749	30	5	NaN	NaN	NaN	7.2733E-12	1	20059	166.71	120.68	1	323070			3961	972	3371	3445	3961	3961		
EDQTEYLEER	10	Unmodified	_EDQTEYLEER_			0	0	0	P08238;Q58FF7;P07900;Q58FF6	P08238;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.288596	1310.56264	1.5074	0.00098931	2.6989	0.0017713	4.2063	0.0027606	656.289452552615	6.1968	0.24831	6.1968	6.0904	6.3387	0	558	43	0.951016745717027	0.0283318814612601	0.951016745717027	384.92328453557	0	11.4673068778807						343	29	4	NaN	NaN	NaN	0.0080273	1	12660	40.386	30.298	1	114630			3962	579;567;1958	3372	3446	3962	3962		
EDQTEYLEER	10	Unmodified	_EDQTEYLEER_			0	0	0	P08238;Q58FF7;P07900;Q58FF6	P08238;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.288596	1310.56264	2.5302	0.0016605	2.6148	0.0017161	5.145	0.0033766	656.29006758504	5.7534	0.29272	5.7534	5.6736	5.9663	0	561	109	0.948993180460448	0.0728938701849807	0.948993180460448	384.10424841693	0	29.5037370110693						1739	34	6	NaN	NaN	NaN	3.9304E-14	1	12661	207.88	163.06	1	6546600			3963	579;567;1958	3372	3446	3963	3963		
EDQTEYLEERR	11	Unmodified	_EDQTEYLEERR_			0	0	1	P08238;Q58FF7;P07900	P08238;P07900	P08238	HSP90AB1;HSP90AB3P;HSP90AA1	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.895193	1466.66375	-0.49722	-0.00024358	1.8116	0.00088749	1.3144	0.00064391	489.896256627552	4.5209	0.13299	4.5209	4.4854	4.6184	0	798	25	0.788241307691771	0.0163681894120964	0.788241307691771	478.025282247105	0	9.92641249226568						184	16	3	NaN	NaN	NaN	0.042051	1	17469	21.088	7.0935	1	47870			3964	579;567	3373	3447	3964	3964		
EDQTLALLNQFK	12	Unmodified	_EDQTLALLNQFK_			0	0	0	Q6UX04	Q6UX04	Q6UX04	CWC27	Peptidyl-prolyl cis-trans isomerase CWC27 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.377549	1418.74054	1.662	0.0011807	-4.8128	-0.0034189	-3.1508	-0.0022382	710.37670178295	15.473	0.15086	15.473	15.429	15.579	0	441	28	1.02971785871157	0.0181066471151929	1.02971785871157	416.445836773995	0	7.322819299738						131	18	2	NaN	NaN	NaN	0.0047339	1	16063	59.645	54.495	1	78163			3965	2089	3374	3448	3965	3965		
EDQVIQLMNAIFSK	14	Unmodified	_EDQVIQLMNAIFSK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.424173	1634.83379	1.0186	0.00083365	-0.59231	-0.00048476	0.4263	0.00034889	818.423692234998	20.04	0.053208	20.04	20.031	20.084	0	360	28	1.08395544855938	0.0180468052044267	1.08395544855938	437.821086446449	0	7.2892957657906						106	7	4	NaN	NaN	NaN	0.0057524	1	22628	28.228	22.2	1	47370			3966	519	3375	3449	3966	3966		
EDQYDHLDAADMTK	14	Unmodified	_EDQYDHLDAADMTK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.348859	1650.68317	2.8712	0.0023726	-1.8773	-0.0015513	0.99397	0.00082137	826.347841259039	6.9328	0.17749	6.9328	6.8885	7.066	0	414	61	1.04781950764076	0.0401953809989963	1.04781950764076	423.191253664303	0	16.2340303386596						814	21	5	NaN	NaN	NaN	1.9316E-11	1	23062	186.39	178.83	1	333070			3967	955	3376	3450	3967	3967		
EDQYDHLDAADMTK	14	Unmodified	_EDQYDHLDAADMTK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.234998	1650.68317	0.88907	0.00049009	1.4204	0.00078298	2.3095	0.0012731	551.236237331577	6.9328	0.16844	6.9328	6.8885	7.0569	0	651	37	0.888155670855968	0.0243856529681402	0.888155670855968	538.057066332454	0	14.773167956011						480	20	5	NaN	NaN	NaN	0.00019067	1	23063	65.173	56.366	1	252260			3968	955	3376	3450	3968	3968		
EDQYDHLDAADMTK	14	Oxidation (M)	_EDQYDHLDAADM(Oxidation (M))TK_	EDQYDHLDAADM(1)TK	EDQYDHLDAADM(56)TK	0	1	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.346317	1666.67808	2.8831	0.0024055	-0.2002	-0.00016704	2.6829	0.0022385	834.346464491117	4.7071	0.079798	4.7071	4.6716	4.7514	0	426	43	1.03977710643793	0.028152295306344	1.03977710643793	419.909551636774	0	11.3691844400487						148	10	2	NaN	NaN	NaN	0.049896	1	23526	55.604	54.454	1	30699			3969	955	3376	3451	3969	3969	339	
EDRFQEFSNIVIPLIK	16	Unmodified	_EDRFQEFSNIVIPLIK_			0	0	1	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.022797	1947.04656	-0.25986	-0.00016892	-0.053273	-3.4628E-05	-0.31313	-0.00020354	650.356410923562	18.213	0.079834	18.213	18.186	18.266	0	588	46	0.93076847747433	0.0303997669355048	0.93076847747433	563.158315272747	0	18.3932760363118						242	10	3	NaN	NaN	NaN	0.0028273	1	30668	57.003	56.834	1	52171			3970	2013	3377	3452	3970	3970		
EDRYEEEIK	9	Unmodified	_EDRYEEEIK_			0	0	1	P09493	P09493	P09493	TPM1	Tropomyosin alpha-1 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.78295	1209.55135	1.9674	0.0011918	0.174	0.0001054	2.1414	0.0012972	605.782737781681	3.5633	0.12417	3.5633	3.5189	3.6431	-4.4409E-16	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.338250386911	0	7.38285721815924						248	15	5	NaN	NaN	NaN	0.028186	1	9710	67.881	41.424	1	60351			3971	602	3378	3453	3971	3971		
EDSAYGSQSVEQEAEK	16	Unmodified	_EDSAYGSQSVEQEAEK_			0	0	0	Q00653	Q00653	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.879035	1755.74352	3.9707	0.0034897	-0.66729	-0.00058647	3.3034	0.0029033	878.879633509933	5.1149	0.062074	5.1149	5.0883	5.1504	0	336	52	1.09998710857178	0.0340696336086099	1.09998710857178	444.039251313776	0	13.7531199067816						194	8	3	NaN	NaN	NaN	2.3174E-09	1	26039	153.52	145.52	1	39595			3972	1505	3379	3454	3972	3972		
EDSGSVPSTGPSQGTPISLK	20	Unmodified	_EDSGSVPSTGPSQGTPISLK_			0	0	0	Q13111	Q13111	Q13111	CHAF1A	Chromatin assembly factor 1 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.481459	1942.94836	2.6805	0.0026068	-4.8261	-0.0046933	-2.1455	-0.0020865	973.476134346773	8.7955	0.13311	8.7955	8.7599	8.8931	0	267	118	1.14597988355104	0.0780200512094398	1.14597988355104	462.256105991805	0	31.4710978604631						500	16	3	NaN	NaN	NaN	0.0012458	1	30583	54.556	49.462	1	94336			3973	1627	3380	3455	3973	3973		
EDSHPFDLGLYNEAVK	16	Unmodified	_EDSHPFDLGLYNEAVK_			0	0	0	P35244	P35244	P35244	RPA3	Replication protein A 14 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.959974	1832.85809	-0.19329	-0.00011829	0.49651	0.00030385	0.30322	0.00018556	611.960284079757	12.529	0.13299	12.529	12.476	12.609	0	678	82	0.869855008346864	0.0548791784158134	0.869855008346864	526.534569514869	0	33.2190816920345						661	16	4	NaN	NaN	NaN	6.1543E-05	1	28041	83.214	79.709	1	179620			3974	963	3381	3456	3974	3974		
EDSIHILNEEYETK	14	Unmodified	_EDSIHILNEEYETK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.94058	1718.79991	-1.3907	-0.0007982	0.5104	0.00029294	-0.88033	-0.00050526	573.940554038641	9.1149	0.097546	9.1149	9.0794	9.177	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	488.515117054829	0	9.90040058481264						175	12	4	NaN	NaN	NaN	0.030786	1	25021	43.306	37.278	1	41982			3975	1668	3382	3457	3975	3975		
EDSLAQAGETINALK	15	Unmodified	_EDSLAQAGETINALK_			0	0	0	Q9Y6D9	Q9Y6D9	Q9Y6D9	MAD1L1	Mitotic spindle assembly checkpoint protein MAD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.399209	1558.78387	0.81734	0.00063785	3.7892	0.0029571	4.6066	0.003595	780.402117606411	12.024	0.1685	12.024	11.979	12.148	0	384	31	1.06790610341098	0.0200782861239661	1.06790610341098	431.515351761898	0	8.11315589627719						238	20	3	NaN	NaN	NaN	4.2984E-06	1	20322	97.175	92.929	1	53254			3976	3461	3383	3458	3976	3976		
EDSLDSVLFLK	11	Unmodified	_EDSLDSVLFLK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.334818	1264.65508	0.49301	0.00031224	-1.1277	-0.00071423	-0.63473	-0.00040199	633.33414291645	16.156	0.16849	16.156	16.076	16.245	0	555	34	0.953040030838688	0.0222530586923161	0.953040030838688	385.888264409771	0	9.01031847427203						294	20	3	NaN	NaN	NaN	0.03011	1	11356	36.24	25.538	1	77722			3977	1696	3384	3459	3977	3977		
EDSMMEYLK	9	Unmodified	_EDSMMEYLK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.2463	1144.47805	1.095	0.00062771	2.0217	0.0011589	3.1167	0.0017866	573.246679969289	10.977	0.16847	10.977	10.924	11.092	0	600	34	0.922661313351899	0.022302429094845	0.922661313351899	374.011251007786	0	9.04054313925064						289	20	3	NaN	NaN	NaN	0.0015069	1	7905	79.809	65.274	1	82548			3978	962	3385	3460	3978	3978		
EDSNLTLQEK	10	Unmodified	_EDSNLTLQEK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.790775	1175.567	1.9621	0.0011553	0.31096	0.00018309	2.273	0.0013383	588.791393386998	4.6716	0.29259	4.6716	4.5652	4.8578	0	612	58	0.914549654013882	0.0385330681003847	0.914549654013882	370.606366905542	0	15.6148988868248						569	34	4	NaN	NaN	NaN	0.06808	1	8751	33.723	18.961	1	270120			3979	1095	3386	3461	3979	3979		
EDSQRPGAHLTVK	13	Unmodified	_EDSQRPGAHLTVK_			0	0	1	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.919673	1436.73719	0.1078	5.1736E-05	1.4068	0.00067517	1.5146	0.0007269	479.920461624025	2.7119	0.15964	2.7119	2.6853	2.8449	0	804	25	0.78414869089473	0.0163750277383129	0.78414869089473	475.635768275322	0	9.9324898316865						182	19	3	NaN	NaN	NaN	0.070666	1	16590	22.142	4.6724	1	42372			3980	608	3387	3462	3980	3980		
EDSSSAEFLEK	11	Unmodified	_EDSSSAEFLEK_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.28024	1240.54593	1.5218	0.00094548	2.4597	0.0015281	3.9815	0.0024736	621.784318785496	6.5072	0.16848	6.5072	6.4185	6.587	0	597	64	0.924688525662974	0.0425302154964563	0.924688525662974	374.487239705837	0	17.2242031379628						423	20	3	NaN	NaN	NaN	0.0078432	1	10624	56.202	43.606	1	134210			3981	1689	3388	3463	3981	3981		
EDSSSTEFVEK	11	Unmodified	_EDSSSTEFVEK_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.277697	1256.54084	2.1344	0.0013431	-0.37624	-0.00023676	1.7581	0.0011063	629.277272342667	4.3701	0.22169	4.3701	4.3347	4.5563	0	606	31	0.918606045818476	0.0202763400038137	0.918606045818476	371.971798283627	0	8.21051275262266						322	26	3	NaN	NaN	NaN	0.0026466	1	11100	87.895	83.367	1	72784			3982	278	3389	3464	3982	3982		
EDTEEHHLRDYFEEYGK	17	Unmodified	_EDTEEHHLRDYFEEYGK_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	549.992174	2195.93959	-0.30356	-0.00016695	0.70555	0.00038805	0.40199	0.00022109	550.243270674898	9.2656	0.20399	9.2656	9.2036	9.4076	0	705	34	0.851531465363931	0.0224078882408908	0.851531465363931	686.402198710122	0	18.0625430563798						670	24	6	NaN	NaN	NaN	0.00015672	1	34630	75.5	71.65	1	382010			3983	808	3390	3465	3983	3983		
EDTEEHHLRDYFEEYGK	17	Unmodified	_EDTEEHHLRDYFEEYGK_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.98714	2195.93959	0.84185	0.00061707	1.4953	0.0010961	2.3372	0.0017131	733.322648654898	9.2656	0.24832	9.2656	9.1858	9.4342	0	582	61	0.934820374997243	0.0405246082465108	0.934820374997243	565.156396036669	0	24.4996174237896						913	29	5	NaN	NaN	NaN	2.5327E-34	1	34632	218.58	183.13	1	383710			3984	808	3390	3465	3984	3984		
EDTEEHHLRDYFEQYGK	17	Unmodified	_EDTEEHHLRDYFEQYGK_			0	0	1	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	549.74617	2194.95558	0.056499	3.106E-05	-0.21896	-0.00012037	-0.16246	-8.9313E-05	549.997100603193	9.0883	0.19509	9.0883	9.0262	9.2213	0	708	37	0.849494101904619	0.0244534611468455	0.849494101904619	684.761851813311	0	19.7114933471768						674	23	6	NaN	NaN	NaN	0.00014031	1	34617	119.43	116.53	1	495250			3985	608	3391	3466	3985	3985		
EDTEEHHLRDYFEQYGK	17	Unmodified	_EDTEEHHLRDYFEQYGK_			0	0	1	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.659135	2194.95558	1.0799	0.00079121	-0.12339	-9.0406E-05	0.95652	0.0007008	732.993366084903	9.0794	0.18623	9.0794	9.0351	9.2213	0	591	46	0.928742107665821	0.0304039794505214	0.928742107665821	561.483296425553	0	18.3811269731685						645	22	5	NaN	NaN	NaN	4.3872E-10	1	34618	141.88	134.67	1	284970			3986	608	3391	3466	3986	3986		
EDTEEYNLR	9	Unmodified	_EDTEEYNLR_			0	0	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.759475	1167.5044	1.9062	0.0011146	1.3987	0.0008179	3.3048	0.0019325	584.760402037925	4.8135	0.23939	4.8135	4.7425	4.9819	0	612	70	0.914549654013882	0.0466582355403207	0.914549654013882	370.636044495268	0	18.9090048723921						687	28	4	NaN	NaN	NaN	1.1111E-06	1	8528	164.53	149.99	1	488960			3987	1204	3392	3467	3987	3987		
EDTESLEIFQNEVAR	15	Unmodified	_EDTESLEIFQNEVAR_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.423413	1778.83227	2.7557	0.0024538	4.0198	0.0035793	6.7755	0.0060331	890.929767558231	13.522	0.32808	13.522	13.398	13.726	1.7764E-15	288	88	1.13199748998575	0.0580148631493793	1.13199748998575	456.914610974374	0	23.4168704976225						681	38	2	NaN	NaN	NaN	1.9223E-08	1	26642	148.76	133.78	1	317510			3988	2719	3393	3468	3988	3988		
EDTLLLIGHLER	12	Unmodified	_EDTLLLIGHLER_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.893366	1407.77218	1.4478	0.0010205	0.77122	0.00054363	2.219	0.0015642	704.893968301006	13.256	0.12415	13.256	13.221	13.345	0	393	31	1.0618830335572	0.0200838253150546	1.0618830335572	429.486584607019	0	8.12305429865609						297	15	4	NaN	NaN	NaN	4.3434E-05	1	15707	85.821	69.942	1	96728			3989	2422	3394	3469	3989	3989		
EDTNNLFSVQFR	12	Unmodified	_EDTNNLFSVQFR_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.354605	1468.69466	0.90136	0.00066282	1.0732	0.00078916	1.9745	0.001452	735.355429646098	13.77	0.15073	13.77	13.726	13.877	0	465	34	1.01360860968299	0.0221639917190946	1.01360860968299	409.796159660251	0	8.9607749997972						234	18	3	NaN	NaN	NaN	0.029355	1	17536	43.168	26.177	1	46489			3990	1966	3395	3470	3990	3990		
EDVDDLVSQLR	11	Unmodified	_EDVDDLVSQLR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.822606	1287.63066	1.5876	0.0010237	-1.7813	-0.0011486	-0.19373	-0.00012492	644.821535827423	13.859	0.17733	13.859	13.806	13.983	0	546	37	0.959108205975751	0.0242743844973287	0.959108205975751	388.270429826894	0	9.82686379267551						458	21	4	NaN	NaN	NaN	2.9031E-18	1	11987	196.32	176.09	1	171180			3991	667	3396	3471	3991	3991		
EDVFVHQTAIK	11	Unmodified	_EDVFVHQTAIK_			0	0	0	P16989;Q9Y2T7;P67809	P16989;P67809	P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.840602	1285.66665	2.2941	0.001477	1.4165	0.00091202	3.7106	0.0023891	643.841764901401	6.2323	0.42564	6.2323	6.1614	6.587	0	534	67	0.967195187796614	0.0444538139384744	0.967195187796614	391.550572410525	0	17.9962809090204						1264	49	6	NaN	NaN	NaN	2.9735E-30	1	11932	234.28	184.32	1	2012500			3992	1440;733	3397	3472	3992	3992		
EDVGDEGEEEK	11	Unmodified	_EDVGDEGEEEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.249137	1234.48372	1.7714	0.0010952	-0.41863	-0.00025882	1.3527	0.00083634	618.249137232337	2.2597	0.14187	2.2597	2.2419	2.3838	0	651	16	0.888155670855968	0.0101599824533473	0.888155670855968	359.711343557732	0	4.11488780485325						101	17	2	NaN	NaN	NaN	0.021894	1	10445	32.549	31.399	1	19282			3993	1737	3398	3473	3993	3993		
EDVGTVVGIDLGTTYSCVGVFK	22	Unmodified	_EDVGTVVGIDLGTTYSCVGVFK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.719114	2315.13551	0.08553	6.6091E-05	0.26601	0.00020555	0.35153	0.00027164	773.053499242009	18.062	0.11526	18.062	18.027	18.142	0	507	19	0.985374541851584	0.012112028195071	0.985374541851584	595.526816580194	0	7.32009737108319						190	14	4	NaN	NaN	NaN	2.1583E-08	1	35774	109.47	101.1	1	35086			3994	638	3399	3474	3994	3994		
EDVGTVVGIDLGTTYSCVGVFK	22	Unmodified	_EDVGTVVGIDLGTTYSCVGVFK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1158.57503	2315.13551	0.0046651	5.4049E-06	0.86721	0.0010047	0.87187	0.0010101	1159.07762574184	18.062	0.32808	18.062	18	18.328	0	63	67	1.28111162701928	0.0435573750339335	1.28111162701928	516.174830820095	0	17.5497749102622						1076	38	5	NaN	NaN	NaN	6.782E-30	1	35775	157.54	149.13	1	195590			3995	638	3399	3474	3995	3995		
EDVHISTSQVAEIVATLEK	19	Unmodified	_EDVHISTSQVAEIVATLEK_			0	0	0	O95202	O95202	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.363548	2068.06881	-0.74049	-0.00051121	-0.040895	-2.8232E-05	-0.78139	-0.00053944	690.698049865553	17.938	0.10639	17.938	17.903	18.009	0	639	31	0.896281965493857	0.0203101032426732	0.896281965493857	542.067937845881	0	12.2834735117386						275	13	4	NaN	NaN	NaN	0.0034767	1	32849	72.031	51.42	1	69599			3996	411	3400	3475	3996	3996		
EDVIWELLNHAQEHFGK	17	Unmodified	_EDVIWELLNHAQEHFGK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	517.008899	2064.00649	-1.4434	-0.00074623	0.012101	6.2565E-06	-1.4313	-0.00073997	517.259586165745	17.787	0.088649	17.787	17.752	17.841	0	765	22	0.810730346695089	0.0143012525920645	0.810730346695089	653.775301318105	0	11.5325715396216						184	11	4	NaN	NaN	NaN	0.060477	1	32775	8.7528	8.2338	1	49094		+	3997	37	3401	3476	3997	3997		
EDVIWELLNHAQEHFGK	17	Unmodified	_EDVIWELLNHAQEHFGK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.009439	2064.00649	0.41721	0.00028746	-0.47708	-0.00032871	-0.059867	-4.1249E-05	689.34327685619	17.796	0.13298	17.796	17.752	17.885	0	603	61	0.920633820089869	0.0405526946120233	0.920633820089869	556.80315057938	0	24.5264377993998						605	16	4	NaN	NaN	NaN	3.6158E-10	1	32776	126.17	112.4	1	180040		+	3998	37	3401	3476	3998	3998		
EDVLSFIQMHR	11	Unmodified	_EDVLSFIQMHR_			0	0	0	Q8N1G2	Q8N1G2	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.845361	1373.67617	1.0471	0.00072025	2.1001	0.0014446	3.1473	0.0021648	688.348584951482	14.276	0.097537	14.276	14.232	14.329	0	456	31	1.01965166402748	0.02014212547595	1.01965166402748	412.505345541146	0	8.14860086293731						174	12	3	NaN	NaN	NaN	0.010883	1	14617	41.796	38.188	1	29410			3999	2240	3402	3477	3999	3999		
EDVLTLLLPVMGDSK	15	Unmodified	_EDVLTLLLPVMGDSK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.442031	1628.86951	1.1756	0.00095863	-1.6943	-0.0013816	-0.51873	-0.00042299	815.440227025069	20.066	0.070933	20.066	20.031	20.102	0	393	88	1.0618830335572	0.0581749199514996	1.0618830335572	428.919004419453	0	23.4981894985089						264	9	4	NaN	NaN	NaN	1.8371E-05	1	22447	76.255	66.005	1	114880			4000	1642	3403	3478	4000	4000		
EDVLTLLLPVMGDSK	15	Oxidation (M)	_EDVLTLLLPVM(Oxidation (M))GDSK_	EDVLTLLLPVM(1)GDSK	EDVLTLLLPVM(110)GDSK	0	1	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.439489	1644.86442	0.66688	0.00054913	0.038108	3.1379E-05	0.70498	0.00058051	823.439428515978	18.887	0.13302	18.887	18.798	18.931	0	408	31	1.0518390438467	0.0200921384005985	1.0518390438467	424.827157593162	0	8.11501160432169						206	16	3	NaN	NaN	NaN	4.5186E-06	1	22892	112.7	98.248	1	37038			4001	1642	3403	3479	4001	4001	553	
EDVSTLIGDDLASCK	15	Unmodified	_EDVSTLIGDDLASCK_			0	0	0	Q9BV44	Q9BV44	Q9BV44	THUMPD3	THUMP domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.882535	1621.75052	1.8499	0.0015019	0.00040933	3.3233E-07	1.8503	0.0015022	811.883067433668	13.664	0.16847	13.664	13.602	13.77	0	372	40	1.07593298845566	0.0260783915787524	1.07593298845566	434.610185907202	0	10.5340525235409						376	20	4	NaN	NaN	NaN	2.6191E-06	1	22237	114.93	88.356	1	95446			4002	2756	3404	3480	4002	4002		
EEAEAPVEDGSQPPPPEPK	19	Unmodified	_EEAEAPVEDGSQPPPPEPK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.96564	2001.91673	3.3207	0.0033272	-2.5776	-0.0025827	0.7431	0.00074456	1002.46455380604	5.6559	0.26606	5.6559	5.5937	5.8598	0	282	94	1.13599383354359	0.0618710206077409	1.13599383354359	458.132269840633	0	24.9518177576384						1664	31	4	NaN	NaN	NaN	5.2882E-20	1	31660	181.08	174.7	1	366390			4003	3410	3405	3481	4003	4003		
EEAENTLQSFR	11	Unmodified	_EEAENTLQSFR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.312406	1322.61026	1.7366	0.0011501	1.8637	0.0012344	3.6003	0.0023845	662.313749134058	7.4826	0.33699	7.4826	7.394	7.7309	0	546	64	0.959108205975751	0.0424654908030729	0.959108205975751	388.16140905031	0	17.1862409720124						1230	39	5	NaN	NaN	NaN	2.5665E-30	1	13059	271.35	226.53	1	1882200			4004	588	3406	3482	4004	4004		
EEAEVKPEVK	10	Unmodified	_EEAEVKPEVK_			0	0	1	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.306061	1156.59757	1.6226	0.00094	-0.33474	-0.00019392	1.2879	0.00074608	579.305930116697	2.5966	0.12413	2.5966	2.57	2.6941	0	588	28	0.93076847747433	0.0182398570098127	0.93076847747433	377.250523274777	0	7.39281117478401						146	15	2	NaN	NaN	NaN	0.0086824	1	8246	97.277	73.156	1	30061			4005	363	3407	3483	4005	4005		
EEAGGGISEEEAAQYDR	17	Unmodified	_EEAGGGISEEEAAQYDR_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.889934	1809.76532	2.5371	0.0022983	-1.4199	-0.0012863	1.1172	0.001012	905.888800444921	6.5515	0.17736	6.5515	6.5161	6.6934	0	354	49	1.08796502040166	0.0320721644177464	1.08796502040166	439.083491685229	0	12.9437598400432						482	21	4	NaN	NaN	NaN	2.0503E-05	1	27465	96.313	94.602	1	112860			4006	3172	3408	3484	4006	4006		
EEAIEHNYGGHDDDLSVR	18	Unmodified	_EEAIEHNYGGHDDDLSVR_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.971602	2054.89298	1.1053	0.00075821	1.0773	0.000739	2.1826	0.0014972	686.306930103478	5.5139	0.079809	5.5139	5.4785	5.5583	0	612	31	0.914549654013882	0.0202875850561227	0.914549654013882	553.139792305387	0	12.2703786886472						226	10	4	NaN	NaN	NaN	8.0251E-05	1	32611	52.201	51.837	1	71034			4007	2452	3409	3485	4007	4007		
EEAIEHNYGGHDDDLSVR	18	Unmodified	_EEAIEHNYGGHDDDLSVR_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	514.73052	2054.89298	0.72002	0.00037062	4.516	0.0023245	5.236	0.0026951	514.982525029471	5.5139	0.062067	5.5139	5.4873	5.5494	0	648	22	0.890187667287968	0.0142239758453706	0.890187667287968	717.871126049956	0	11.4705942715789						120	8	4	NaN	NaN	NaN	0.0088356	1	32612	44.571	44.136	1	31692			4008	2452	3409	3485	4008	4008		
EEAPDILCLQETK	13	Unmodified	_EEAPDILCLQETK_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.376888	1544.73922	1.6222	0.0012546	0.71038	0.00054939	2.3326	0.0018039	773.377334179035	11.846	0.37244	11.846	11.66	12.032	0	408	67	1.0518390438467	0.0442088234641178	1.0518390438467	425.057069300229	0	17.8651601200762						1186	43	5	NaN	NaN	NaN	3.8811E-06	1	19874	139.78	108.86	1	560040			4009	866	3410	3486	4009	4009		
EEAPQWLESDSCQK	14	Unmodified	_EEAPQWLESDSCQK_			0	0	0	Q8IWB7	Q8IWB7	Q8IWB7	WDFY1	WD repeat and FYVE domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.869959	1705.72536	1.6982	0.00145	2.7119	0.0023156	4.4101	0.0037657	853.869848828487	8.6891	0.071035	8.6891	8.6623	8.7334	0	375	19	1.07392668217569	0.0120403278531143	1.07392668217569	433.618831125391	0	4.86151706321021						75	9	2	NaN	NaN	NaN	0.017034	1	24642	37.504	35.662	1	17098			4010	2202	3411	3487	4010	4010		
EEAQAEIEQYR	11	Unmodified	_EEAQAEIEQYR_			0	0	0	O75348	O75348	O75348	ATP6V1G1	V-type proton ATPase subunit G 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.317688	1364.62082	1.5258	0.0010426	0.34977	0.000239	1.8755	0.0012816	683.317473345663	6.2589	0.23061	6.2589	6.1436	6.3742	0	516	40	0.979317271586824	0.026255437790293	0.979317271586824	396.21405958741	0	10.6224753662117						442	27	4	NaN	NaN	NaN	2.494E-11	1	14322	136.84	124.88	1	116120			4011	321	3412	3488	4011	4011		
EEAQSLEDLAGFK	13	Unmodified	_EEAQSLEDLAGFK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.848821	1435.68309	2.3379	0.0016806	0.53631	0.00038552	2.8742	0.0020661	719.350352951142	12.839	0.13301	12.839	12.804	12.937	0	474	34	1.00756305028564	0.0221731807232346	1.00756305028564	407.439381618217	0	8.96641360540417						317	16	4	NaN	NaN	NaN	0.00041504	1	16555	92.445	60.492	1	127860			4012	1074	3413	3489	4012	4012		
EEAQTSGVQEAETR	14	Unmodified	_EEAQTSGVQEAETR_			0	0	0	Q8N3D4	Q8N3D4	Q8N3D4	EHBP1L1	EH domain-binding protein 1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.852623	1533.69069	2.7544	0.002115	-1.3564	-0.0010415	1.398	0.0010735	767.851544227382	3.2351	0.053191	3.2351	3.2173	3.2705	0	468	22	1.01159370163332	0.0141043571552784	1.01159370163332	408.819751189455	0	5.70005504541803						84	7	2	NaN	NaN	NaN	0.068209	1	19537	20.611	20.108	1	17536			4013	2246	3414	3490	4013	4013		
EEASDYLELDTIK	13	Unmodified	_EEASDYLELDTIK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.367044	1524.71953	2.4282	0.0018536	0.89621	0.00068414	3.3244	0.0025377	763.367817863036	12.689	0.33699	12.689	12.564	12.901	0	417	70	1.04580932352505	0.0462087543935807	1.04580932352505	422.669695189445	0	18.6755268816944						1650	39	5	NaN	NaN	NaN	6.6241E-33	1	19261	236.42	198.67	1	1105400			4014	700	3415	3491	4014	4014		
EEASGSSVTAEEAK	14	Unmodified	_EEASGSSVTAEEAK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.817718	1393.62088	2.6825	0.0018719	-1.5907	-0.00111	1.0917	0.00076184	697.816669643698	2.7474	0.27491	2.7474	2.7119	2.9868	0	570	55	0.942920803299286	0.0364367993770142	0.942920803299286	381.409093468354	0	14.738593708664						912	32	4	NaN	NaN	NaN	5.4796E-06	1	15258	110.52	104.26	1	239000			4015	674	3416	3492	4015	4015		
EEAVQTFNYLCDLIESNHPIVLGPNNTNLPK	31	Unmodified	_EEAVQTFNYLCDLIESNHPIVLGPNNTNLPK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1180.58735	3538.74023	2.3543	0.0027794	-0.69895	-0.00082517	1.6553	0.0019542	1181.254868545	19.809	0.026638	19.809	19.8	19.827	0	279	94	1.13799159301878	0.0618880385252689	1.13799159301878	686.343377016536	0	37.3257989065492						372	4	5	NaN	NaN	NaN	0.00026121	1	38666	38.942	38.723	1	75979			4016	74	3417	3493	4016	4016		
EEAYNSLMK	9	Unmodified	_EEAYNSLMK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.752607	1083.49066	1.1088	0.00060179	1.4891	0.00080822	2.5979	0.00141	542.753330601644	6.4717	0.24827	6.4717	6.4008	6.6491	0	636	37	0.898312834727904	0.0243687449926693	0.898312834727904	364.385221201147	0	9.88476418377979						511	29	4	NaN	NaN	NaN	0.00099199	1	6290	77.072	40.502	1	200090			4017	1055	3418	3494	4017	4017		
EECLQFTANALALAMER	17	Unmodified	_EECLQFTANALALAMER_			0	0	0	P28072	P28072	P28072	PSMB6	Proteasome subunit beta type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.971693	1965.92883	0.78383	0.00077126	2.6895	0.0026464	3.4733	0.0034176	983.975002184851	18.027	0.097542	18.027	18	18.098	0	204	49	1.18784641916898	0.0318523281569778	1.18784641916898	479.1041421989	0	12.8472688997649						270	12	3	NaN	NaN	NaN	0.00011933	1	31031	73.502	68.114	1	50691			4018	874	3419	3495	4018	4018		
EEDGSLSLDGADSTGVVAK	19	Unmodified	_EEDGSLSLDGADSTGVVAK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.436717	1848.85888	2.0751	0.0019203	-0.27169	-0.00025143	1.8034	0.0016689	925.43774007306	9.1947	0.097555	9.1947	9.1592	9.2568	0	306	31	1.12000185836644	0.0200009774591183	1.12000185836644	451.940299326991	0	8.07074351902446						156	12	3	NaN	NaN	NaN	0.014002	1	28451	39.166	35.878	1	26421			4019	1648	3420	3496	4019	4019		
EEDGSLSLDGADSTGVVAK	19	Unmodified	_EEDGSLSLDGADSTGVVAK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.436717	1848.85888	2.2854	0.0021149	-0.035827	-3.3156E-05	2.2495	0.0020818	925.43637041767	9.4962	0.32807	9.4962	9.4342	9.7622	0	297	70	1.12600091227925	0.0459864455823558	1.12600091227925	454.36102149456	0	18.556333446843						1518	38	5	NaN	NaN	NaN	2.5125E-45	1	28452	285.99	254.95	1	501200			4020	1648	3420	3496	4020	4020		
EEDLLQAWSTFIR	13	Unmodified	_EEDLLQAWSTFIR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.406837	1606.79912	0.87715	0.00070558	3.9194	0.0031528	4.7966	0.0038584	804.411818602882	19.995	0.08868	19.995	19.978	20.066	0	384	40	1.06790610341098	0.0261035740601534	1.06790610341098	431.401800887369	0	10.5450552470653						112	11	4	NaN	NaN	NaN	5.6352E-06	1	21821	112.93	104.92	1	39027			4021	878	3421	3497	4021	4021		
EEDLVVWVDPLDGTK	15	Unmodified	_EEDLVVWVDPLDGTK_			0	0	0	O95861	O95861	O95861	BPNT1	3(2),5-bisphosphate nucleotidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.930342	1713.84613	2.0973	0.0017994	-0.73125	-0.00062737	1.3661	0.001172	858.430936144848	17.805	0.15073	17.805	17.725	17.876	0	351	43	1.08996939197032	0.0280631418672823	1.08996939197032	440.07959201545	0	11.3306081020316						398	18	4	NaN	NaN	NaN	0.00023441	1	24878	57.003	41.124	1	89745			4022	459	3422	3498	4022	4022		
EEDPATGTGDPPR	13	Unmodified	_EEDPATGTGDPPR_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.299495	1340.58444	2.1679	0.0014553	-0.39916	-0.00026796	1.7687	0.0011873	671.299456444958	3.1907	0.22169	3.1907	3.1198	3.3415	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	374.99972687016	0	9.8418067012596						344	26	3	NaN	NaN	NaN	0.00052492	1	13598	79.311	60.974	1	67470			4023	1072	3423	3499	4023	4023		
EEEAGGFIANLEPVSLADR	19	Unmodified	_EEEAGGFIANLEPVSLADR_			0	0	0	Q13868	Q13868	Q13868	EXOSC2	Exosome complex component RRP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.99728	2015.98	0.90495	0.00091309	-0.3031	-0.00030583	0.60185	0.00060726	1009.49893436919	16.315	0.16847	16.315	16.236	16.404	0	207	91	1.18585551256002	0.059657603099011	1.18585551256002	478.217886521763	0	24.0580176647105						616	20	3	NaN	NaN	NaN	1.9594E-14	1	31910	155.28	143.11	1	157200			4024	1707	3424	3500	4024	4024		
EEEAIQLDGLNASQIR	16	Unmodified	_EEEAIQLDGLNASQIR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.452505	1784.89046	2.26	0.0020192	0.89048	0.00079561	3.1505	0.0028148	893.452278287838	12.423	0.17733	12.423	12.316	12.493	0	276	73	1.13998907770044	0.0479627536019942	1.13998907770044	460.128232295757	0	19.3589723468577						386	21	2	NaN	NaN	NaN	1.6201E-08	1	26831	153.18	131.18	1	308790			4025	700	3425	3501	4025	4025		
EEEATEWQHK	10	Unmodified	_EEEATEWQHK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.786024	1285.55749	2.6422	0.001701	1.2914	0.0008314	3.9336	0.0025324	643.785117544607	3.0045	0.2394	3.0045	2.9247	3.1641	0	591	40	0.928742107665821	0.0263501137530128	0.928742107665821	375.983914263472	0	10.6673519251162						462	28	4	NaN	NaN	NaN	6.2489E-05	1	11910	86.205	64.93	1	104150			4026	962	3426	3502	4026	4026		
EEEEEAGESVEDIFSEVVGR	20	Unmodified	_EEEEEAGESVEDIFSEVVGR_			0	0	0	Q8TDD1	Q8TDD1	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.99787	2237.98118	0.79079	0.00088568	0.14114	0.00015807	0.93192	0.0010438	1120.49932984963	19.038	0.070941	19.038	19.011	19.082	0	138	34	1.23157729878518	0.0218369546358563	1.23157729878518	496.31894490256	0	8.80017380593483						202	9	4	NaN	NaN	NaN	1.5887E-07	1	35072	92.747	86.225	1	40643			4027	2347	3427	3503	4027	4027		
EEEEGKEEDEIK	12	Unmodified	_EEEEGKEEDEIK_			0	0	1	P82970	P82970	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.322833	1462.63111	2.2886	0.001676	-1.5742	-0.0011528	0.71445	0.00052321	732.321689527491	2.4902	0.0887	2.4902	2.4724	2.5611	0	459	22	1.01763759082241	0.0141004608097721	1.01763759082241	411.440981965893	0	5.70095630710313						91	11	2	NaN	NaN	NaN	0.00055242	1	17339	134.2	102.06	1	19387			4028	1479	3428	3504	4028	4028		
EEEEPMDTSSVTHTEHYK	18	Unmodified	_EEEEPMDTSSVTHTEHYK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.95495	2147.89534	2.8811	0.0030971	-2.1081	-0.0022661	0.77302	0.00083097	1075.454497399	4.9287	0.053198	4.9287	4.911	4.9642	0	177	49	1.2057522832638	0.0318260997868145	1.2057522832638	486.037338239945	0	12.829063682194						188	7	3	NaN	NaN	NaN	0.00083213	1	33988	65.173	63.325	1	32175			4029	196	3429	3505	4029	4029		
EEEEPMDTSSVTHTEHYK	18	Unmodified	_EEEEPMDTSSVTHTEHYK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	537.981112	2147.89534	0.63646	0.0003424	0.97855	0.00052644	1.615	0.00086884	538.232310430898	4.9287	0.070921	4.9287	4.9021	4.9731	0	717	28	0.84338031290707	0.0183464663932061	0.84338031290707	679.927132625087	0	14.7907890398074						246	9	5	NaN	NaN	NaN	1.4903E-05	1	33989	92.747	91.94	1	85239			4030	196	3429	3505	4030	4030		
EEEEPMDTSSVTHTEHYK	18	Unmodified	_EEEEPMDTSSVTHTEHYK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.972391	2147.89534	2.571	0.0018434	-0.36242	-0.00025985	2.2086	0.0015835	717.307049109638	4.9376	0.16845	4.9376	4.9021	5.0706	0	513	118	0.981336640919867	0.0787882346857482	0.981336640919867	593.361688340297	0	47.6390241687761						876	20	4	NaN	NaN	NaN	5.6165E-07	1	33990	85.081	78.091	1	246780			4031	196	3429	3505	4031	4031		
EEEEVGFDWSDR	12	Unmodified	_EEEEVGFDWSDR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.31006	1496.60557	1.2184	0.00091299	1.3803	0.0010343	2.5987	0.0019473	749.310762759499	11.154	0.19509	11.154	11.11	11.305	0	477	28	1.0055473068722	0.0181416924529938	1.0055473068722	406.466252328507	0	7.33330564546179						337	23	3	NaN	NaN	NaN	4.4807E-11	1	18426	183	165.53	1	92912			4032	1816	3430	3506	4032	4032		
EEEFLTNELSR	11	Unmodified	_EEEFLTNELSR_			0	0	0	Q16204	Q16204	Q16204	CCDC6	Coiled-coil domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.827889	1365.64122	1.3924	0.00095215	2.6986	0.0018454	4.091	0.0027975	683.829568071548	10.711	0.11527	10.711	10.631	10.746	0	498	52	0.991429299781895	0.0342865984735948	0.991429299781895	401.111352099368	0	13.8716334847651						328	14	4	NaN	NaN	NaN	0.00073231	1	14358	74.424	59.969	1	111750			4033	1879	3431	3507	4033	4033		
EEEGIGEELAIHNR	14	Unmodified	_EEEGIGEELAIHNR_			0	0	0	Q9UEE9	Q9UEE9	Q9UEE9	CFDP1	Craniofacial development protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.593514	1594.75871	1.6683	0.00088853	-0.32626	-0.00017377	1.342	0.00071477	532.593393514209	7.7132	0.088755	7.7132	7.6777	7.7664	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	536.982363915509	0	11.0854117406959						186	11	3	NaN	NaN	NaN	0.047498	1	21423	50.297	49.245	1	64559			4034	3198	3432	3508	4034	4034		
EEEGIGEELAIHNR	14	Unmodified	_EEEGIGEELAIHNR_			0	0	0	Q9UEE9	Q9UEE9	Q9UEE9	CFDP1	Craniofacial development protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.386633	1594.75871	3.4653	0.0027667	-0.8877	-0.00070872	2.5776	0.002058	798.385852057831	7.7132	0.088745	7.7132	7.6688	7.7576	0	363	49	1.08195024817156	0.0320810051607971	1.08195024817156	437.10343061803	0	12.9605935551629						370	11	3	NaN	NaN	NaN	3.1123E-07	1	21424	112.93	100.97	1	98385			4035	3198	3432	3508	4035	4035		
EEEGMLSPILAHGGVR	16	Unmodified	_EEEGMLSPILAHGGVR_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.622528	1693.84575	0.46072	0.00026059	0.81988	0.00046374	1.2806	0.00072434	565.623071122255	11.536	0.11533	11.536	11.483	11.598	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	553.929520579033	0	8.6009314370815						202	14	3	NaN	NaN	NaN	0.021157	1	24315	36.952	28.95	1	51212			4036	2787	3433	3509	4036	4036		
EEEGTGVVHQAPYFGAEDYR	20	Unmodified	_EEEGTGVVHQAPYFGAEDYR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.506	2252.99744	1.6371	0.0018459	-0.44769	-0.00050477	1.1895	0.0013411	1128.00643804654	9.381	0.079764	9.381	9.3455	9.4253	0	156	55	1.21966378336455	0.035765079225333	1.21966378336455	491.497650845559	0	14.4125394730217						353	10	3	NaN	NaN	NaN	0.067127	1	35212	29.217	28.275	1	72367			4037	1036	3434	3510	4037	4037		
EEEGTGVVHQAPYFGAEDYR	20	Unmodified	_EEEGTGVVHQAPYFGAEDYR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.006423	2252.99744	0.69636	0.00052366	2.0869	0.0015694	2.7833	0.0020931	752.341448967601	9.381	0.16848	9.381	9.3278	9.4962	0	582	109	0.934820374997243	0.0729140651145884	0.934820374997243	565.066486539931	0	44.0740228771391						1152	20	5	NaN	NaN	NaN	2.8028E-22	1	35213	164.22	151.53	1	477510			4038	1036	3434	3510	4038	4038		
EEEHDCFLEEIMTK	14	Unmodified	_EEEHDCFLEEIMTK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.927177	1808.7597	-1.0154	-0.00061325	-1.5666	-0.00094614	-2.5821	-0.0015594	603.926314013606	13.93	0.15074	13.93	13.886	14.036	0	753	40	0.81889964927511	0.0265410084545386	0.81889964927511	495.740177979933	0	16.0672241912263						471	18	5	NaN	NaN	NaN	3.3383E-06	1	27450	117.45	112.92	1	177940			4039	666	3435	3511	4039	4039		
EEEHDCFLEEIMTK	14	Unmodified	_EEEHDCFLEEIMTK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.387127	1808.7597	2.3661	0.0021423	0.63617	0.00057598	3.0023	0.0027183	905.387515336084	13.93	0.19508	13.93	13.877	14.072	0	324	40	1.1079963157843	0.0260209682813848	1.1079963157843	447.169652786	0	10.5016480522373						669	23	6	NaN	NaN	NaN	1.7692E-11	1	27451	117.21	106.42	1	301560			4040	666	3435	3511	4040	4040		
EEEHDCFLEEIMTK	14	Oxidation (M)	_EEEHDCFLEEIM(Oxidation (M))TK_	EEEHDCFLEEIM(1)TK	EEEHDCFLEEIM(58)TK	0	1	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.258815	1824.75462	-1.2141	-0.00073968	-0.36949	-0.00022511	-1.5836	-0.0009648	609.258207411562	10.587	0.10639	10.587	10.543	10.649	0	756	19	0.816857749704129	0.0122539541663672	0.816857749704129	494.471114970202	0	7.41772527913463						126	13	3	NaN	NaN	NaN	0.00045648	1	27842	58.476	56.34	1	25157			4041	666	3435	3512	4041	4041	200	
EEEIAALVIDNGSGMCK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))EEEIAALVIDNGSGMCK_			1	0	0	P63261	P63261	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.434609	1876.85466	0.84104	0.0007901	1.122	0.0010541	1.9631	0.0018442	939.436246015836	19.144	0.25713	19.144	19.055	19.312	0	147	67	1.22562176648663	0.0436769225887712	1.22562176648663	494.504832587729	0	17.6224426517991						1373	30	7	NaN	NaN	NaN	1.576E-34	1	29071	210.4	192.3	1	1236000			4042	1436	3436	3513	4042	4042		
EEEIAALVIDNGSGMCK	17	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))EEEIAALVIDNGSGM(Oxidation (M))CK_	EEEIAALVIDNGSGM(1)CK	EEEIAALVIDNGSGM(150)CK	1	1	0	P63261	P63261	P63261	ACTG1	Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.432066	1892.84958	1.0752	0.0010187	-0.86138	-0.0008161	0.21383	0.00020259	947.933240093447	18.195	0.23054	18.195	18.133	18.364	0	144	64	1.22760721615852	0.0416944646743262	1.22760721615852	495.275202752537	0	16.8215323056304						1313	27	6	NaN	NaN	NaN	8.8316E-12	1	29434	149.58	136.41	1	818190			4043	1436	3436	3514	4043	4043	513	
EEEIVDWWSK	10	Unmodified	_EEEIVDWWSK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.808968	1319.60338	0.72049	0.00047611	-0.48675	-0.00032165	0.23374	0.00015446	660.808885979546	14.285	0.10638	14.285	14.249	14.356	0	573	25	0.940896116921038	0.016196370719784	0.940896116921038	380.799761044879	0	6.55500005682939						171	13	3	NaN	NaN	NaN	0.00041989	1	12949	76.572	61.81	1	38602			4044	3136	3437	3515	4044	4044		
EEEMDDMDRDLGDEYGWK	18	Unmodified	_EEEMDDMDRDLGDEYGWK_			0	0	1	Q9HD45	Q9HD45	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.961386	2231.86233	-1.0445	-0.00077813	0.7008	0.00052207	-0.34373	-0.00025607	745.296735227105	11.961	0.070935	11.961	11.926	11.997	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	547.939381862256	0	12.2689545755826						217	9	4	NaN	NaN	NaN	7.6407E-06	1	35002	62.398	61.127	1	56556			4045	2971	3438	3516	4045	4045		
EEEMGEEEEVER	12	Unmodified	_EEEMGEEEEVER_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.798668	1493.58278	1.6423	0.0012281	0.69483	0.00051959	2.3371	0.0017477	747.798802678647	4.6539	0.097549	4.6539	4.6184	4.7159	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	401.582465938383	0	6.52447358264783						149	12	3	NaN	NaN	NaN	0.00044234	1	18341	66.664	65.701	1	32632			4046	1776	3439	3517	4046	4046		
EEENVGIDITEPLYMQR	17	Unmodified	_EEENVGIDITEPLYMQR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.48569	2034.95682	1.501	0.0015288	0.48757	0.00049658	1.9886	0.0020254	1018.98797072812	14.967	0.097555	14.967	14.914	15.012	0	210	64	1.18386433251387	0.0418205460286183	1.18386433251387	477.384454974202	0	16.8638230110388						482	12	4	NaN	NaN	NaN	7.2849E-05	1	32242	103.23	97.026	1	111010			4047	950	3440	3518	4047	4047		
EEESQQQAVLEQER	14	Unmodified	_EEESQQQAVLEQER_			0	0	0	Q9UM54	Q9UM54	Q9UM54	MYO6	Unconventional myosin-VI	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.897562	1701.78057	2.869	0.0024441	-3.0366	-0.0025869	-0.16759	-0.00014277	852.394822436965	5.1327	0.11526	5.1327	5.0972	5.2125	0	402	31	1.05585747106793	0.0200949105761223	1.05585747106793	426.331019799516	0	8.11386380591057						173	14	3	NaN	NaN	NaN	1.0474E-35	1	24547	198.33	178.04	1	32050			4048	3286	3441	3519	4048	4048		
EEETEAAIGAPPTATEGPETK	21	Unmodified	_EEETEAAIGAPPTATEGPETK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.50005	2126.98554	2.2667	0.0024129	-0.89628	-0.00095408	1.3704	0.0014588	1065.00055790953	7.4294	0.23053	7.4294	7.3674	7.5979	0	213	130	1.18187287897418	0.0855621634722794	1.18187287897418	476.441665518699	0	34.4921864232121						2143	27	4	NaN	NaN	NaN	4.6129E-29	1	33704	157.54	147.96	1	494990			4049	1648	3442	3520	4049	4049		
EEETSIDVAGKPNEVTK	17	Unmodified	_EEETSIDVAGKPNEVTK_			0	0	1	P53985	P53985	P53985	SLC16A1	Monocarboxylate transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.457453	1844.90035	2.6734	0.0024688	-1.6067	-0.0014837	1.0668	0.00098513	923.455949062583	5.4873	0.097533	5.4873	5.4608	5.5583	0	297	55	1.12600091227925	0.0360017689758143	1.12600091227925	454.368286544937	0	14.5275744484215						359	12	3	NaN	NaN	NaN	0.019484	1	28351	72.327	68.591	1	89267			4050	1245	3443	3521	4050	4050		
EEETSIDVAGKPNEVTK	17	Unmodified	_EEETSIDVAGKPNEVTK_			0	0	1	P53985	P53985	P53985	SLC16A1	Monocarboxylate transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.974061	1844.90035	1.5491	0.00095421	0.48312	0.00029759	2.0322	0.0012518	616.308558698113	5.4873	0.10637	5.4873	5.4608	5.5671	0	543	43	0.961130371139249	0.0283161971552985	0.961130371139249	581.756244589171	0	17.1393236680129						345	13	4	NaN	NaN	NaN	0.0037695	1	28352	55.782	47.781	1	130500			4051	1245	3443	3521	4051	4051		
EEEVSLQGINTR	12	Unmodified	_EEEVSLQGINTR_			0	0	0	Q9Y6W5	Q9Y6W5	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.846613	1373.67867	1.2782	0.00087918	1.7998	0.001238	3.078	0.0021172	687.848321896925	8.352	0.10644	8.352	8.3164	8.4229	0	510	34	0.983355730988811	0.0222130658502994	0.983355730988811	397.821632391609	0	8.98641034826994						186	13	3	NaN	NaN	NaN	0.0025573	1	14618	45.939	23.896	1	52800			4052	3476	3444	3522	4052	4052		
EEFAIMQTPAGELYDK	16	Unmodified	_EEFAIMQTPAGELYDK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.434935	1840.85532	2.3783	0.0021914	0.99012	0.00091234	3.3684	0.0031037	921.437514364765	14.435	0.17735	14.435	14.356	14.533	0	261	43	1.14997238118939	0.0279551776858049	1.14997238118939	464.048947385308	0	11.2807672525578						579	21	5	NaN	NaN	NaN	6.0726E-09	1	28245	117.41	97.072	1	222520			4053	2420	3445	3523	4053	4053		
EEFASTCPDDEEIELAYEQVAK	22	Unmodified	_EEFASTCPDDEEIELAYEQVAK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1287.06542	2572.11629	1.5412	0.0019836	-1.1799	-0.0015186	0.36123	0.00046493	1287.56543677521	15.482	0.12425	15.482	15.42	15.544	0	63	85	1.28111162701928	0.0554442713613115	1.28111162701928	515.866972639699	0	22.325820649931						879	15	5	NaN	NaN	NaN	1.5003E-11	1	37119	107.46	105.49	1	227310			4054	71	3446	3524	4054	4054		
EEFASTCPDDEEIELAYEQVAK	22	Unmodified	_EEFASTCPDDEEIELAYEQVAK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	858.379375	2572.11629	2.2254	0.0019102	-0.62167	-0.00053363	1.6037	0.0013766	858.712904239162	15.473	0.12433	15.473	15.429	15.553	0	366	49	1.07994477139643	0.0321075493337244	1.07994477139643	652.29288388599	0	19.3931453756895						481	15	3	NaN	NaN	NaN	5.5548E-06	1	37120	116.36	116.3	1	161320			4055	71	3446	3524	4055	4055		
EEFAVPENSSVQQFK	15	Unmodified	_EEFAVPENSSVQQFK_			0	0	0	Q9UHD9;Q9UMX0	Q9UHD9;Q9UMX0	Q9UHD9	UBQLN2;UBQLN1	Ubiquilin-2;Ubiquilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.917766	1737.82098	3.0793	0.0026787	-0.49687	-0.00043224	2.5824	0.0022465	869.917324686229	10.445	0.20397	10.445	10.365	10.569	0	333	79	1.10198982404297	0.0520885785221856	1.10198982404297	444.883641869853	0	21.0286483660581						1207	24	5	NaN	NaN	NaN	3.4836E-08	1	25536	142.51	135.76	1	495850			4056	3216;3289	3447	3525	4056	4056		
EEFDRLDSSAVLDTGK	16	Unmodified	_EEFDRLDSSAVLDTGK_			0	0	1	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.623251	1780.84792	-0.78868	-0.00046896	1.8094	0.0010759	1.0207	0.00060694	594.958309455977	10.099	0.13301	10.099	10.028	10.161	0	753	31	0.81889964927511	0.0204175783261862	0.81889964927511	495.799215013374	0	12.361733596489						216	16	3	NaN	NaN	NaN	2.0102E-06	1	26701	108.91	96.895	1	51678			4057	1055	3448	3526	4057	4057		
EEFDRLDSSAVLDTGK	16	Unmodified	_EEFDRLDSSAVLDTGK_			0	0	1	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.623251	1780.84792	0.61502	0.00036571	0.93095	0.00055357	1.546	0.00091927	594.623799817913	10.099	0.13299	10.099	10.064	10.197	0	657	55	0.884090832094921	0.0365987959627344	0.884090832094921	535.26893547672	0	22.1585812718835						496	16	4	NaN	NaN	NaN	3.9284E-09	1	26702	160.52	140.97	1	160950			4058	1055	3448	3526	4058	4058		
EEFPNENQVVFAR	13	Unmodified	_EEFPNENQVVFAR_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.880987	1577.74742	1.8471	0.001459	-0.87105	-0.00068802	0.97601	0.00077093	789.88033420529	10.746	0.1242	10.746	10.649	10.773	0	426	16	1.03977710643793	0.0100578591978064	1.03977710643793	420.104648149729	0	4.06371074461254						102	15	2	NaN	NaN	NaN	0.00013889	1	20898	103.87	95.399	1	34575			4059	2719	3449	3527	4059	4059		
EEFQHAMGGVPAWAETTK	18	Unmodified	_EEFQHAMGGVPAWAETTK_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.64388	1987.90981	0.99143	0.00065796	0.24841	0.00016486	1.2398	0.00082282	663.978167589796	10.684	0.070944	10.684	10.658	10.729	0	540	64	0.963152256458504	0.0424948927887633	0.963152256458504	582.66730984566	0	25.7076539014216						237	9	2	NaN	NaN	NaN	0.0017395	1	31405	56.08	50.382	1	69446			4060	3431	3450	3528	4060	4060		
EEFTAFLHPEEFEHMK	16	Unmodified	_EEFTAFLHPEEFEHMK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	505.983192	2019.90366	-1.3569	-0.00068659	-0.79681	-0.00040317	-2.1537	-0.0010898	506.233671664757	14.054	0.16848	14.054	13.992	14.161	0	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	662.105810180186	0	16.4649018873732						454	20	5	NaN	NaN	NaN	0.0027495	1	31978	35.45	32.556	1	150350			4061	1831	3451	3529	4061	4061		
EEFTAFLHPEEFEHMK	16	Unmodified	_EEFTAFLHPEEFEHMK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.308498	2019.90366	0.9455	0.00063756	-0.19109	-0.00012885	0.75441	0.00050871	674.643149414288	14.045	0.26599	14.045	13.948	14.214	0	603	61	0.920633820089869	0.0405583153888894	0.920633820089869	556.884301621094	0	24.5334123593949						1395	31	7	NaN	NaN	NaN	1.6385E-09	1	31979	183.08	159.28	1	1525600			4062	1831	3451	3529	4062	4062		
EEFTAFLHPEEFEHMK	16	Unmodified	_EEFTAFLHPEEFEHMK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.308498	2019.90366	0.085295	5.7515E-05	1.8702	0.0012611	1.9555	0.0013186	674.644347551894	13.957	0.026604	13.957	13.939	13.966	1.7764E-15	603	4	0.920633820089869	0.00202777427139267	0.920633820089869	556.884293781769	0	1.22658500962211						13	4	2	NaN	NaN	NaN	0.019328	1	31980	16.131	12.843	1	2647.2			4063	1831	3451	3529	4063	4063		
EEFTAFLHPEEFEHMK	16	Unmodified	_EEFTAFLHPEEFEHMK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.95911	2019.90366	1.8279	0.0018479	0.67377	0.00068116	2.5017	0.0025291	1011.4614524269	14.054	0.15961	14.054	13.966	14.125	0	207	55	1.18585551256002	0.03583387204855	1.18585551256002	478.211530231776	0	14.4504710776048						804	19	5	NaN	NaN	NaN	3.3763E-06	1	31981	87.573	78.82	1	279920			4064	1831	3451	3529	4064	4064		
EEFTAFLHPEEYDYMK	16	Unmodified	_EEFTAFLHPEEYDYMK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.636391	2047.88734	0.86092	0.00058856	0.46771	0.00031975	1.3286	0.0009083	683.971013179882	14.914	0.19508	14.914	14.852	15.047	0	498	55	0.991429299781895	0.0363260498310551	0.991429299781895	599.652053119086	0	21.9712997867729						972	23	6	NaN	NaN	NaN	2.4743E-05	1	32490	89.382	81.418	1	525420			4065	241	3452	3530	4065	4065		
EEFTAFLHPEEYDYMK	16	Unmodified	_EEFTAFLHPEEYDYMK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.95095	2047.88734	1.4942	0.0015315	1.0412	0.0010672	2.5354	0.0025986	1025.45374374071	14.932	0.20396	14.932	14.834	15.038	0	171	55	1.20972836110953	0.0357896253320413	1.20972836110953	487.793057561031	0	14.4312817082904						928	24	5	NaN	NaN	NaN	3.3743E-07	1	32492	81.48	74.625	1	283850			4066	241	3452	3530	4066	4066		
EEFTAFLHPEEYDYMK	16	Oxidation (M)	_EEFTAFLHPEEYDYM(Oxidation (M))K_	EEFTAFLHPEEYDYM(1)K	EEFTAFLHPEEYDYM(41)K	0	1	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.96803	2063.88226	1.2779	0.00088041	0.10727	7.3909E-05	1.3851	0.00095432	689.301809206245	13.531	0.10642	13.531	13.469	13.575	0	558	52	0.951016745717027	0.0344053845172715	0.951016745717027	575.179098821417	0	20.8085274527193						536	13	4	NaN	NaN	NaN	0.0034328	1	32760	40.861	31.599	1	131260			4067	241	3452	3531	4067	4067	47	
EEFTAFLHPEEYDYMK	16	Oxidation (M)	_EEFTAFLHPEEYDYM(Oxidation (M))K_	EEFTAFLHPEEYDYM(1)K	EEFTAFLHPEEYDYM(61)K	0	1	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.94841	2063.88226	2.4223	0.0025021	-0.2671	-0.00027591	2.1552	0.0022262	1033.44962474997	13.54	0.12413	13.54	13.478	13.602	0	168	52	1.21171599086077	0.0337943541860266	1.21171599086077	488.569024366102	0	13.6260268728653						577	15	4	NaN	NaN	NaN	0.0023981	1	32761	61.194	55.291	1	140680			4068	241	3452	3531	4068	4068	47	
EEFTSGGPLGQK	12	Unmodified	_EEFTSGGPLGQK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.306592	1248.59863	1.7961	0.0011231	0.78231	0.00048918	2.5784	0.0016123	625.307656218647	6.7023	0.27488	6.7023	6.6136	6.8885	0	522	73	0.975277694896658	0.0485152092692018	0.975277694896658	394.94718767874	0	19.6466560865489						595	32	3	NaN	NaN	NaN	0.00038541	1	10871	108.3	77.71	1	164050			4069	1060	3453	3532	4069	4069		
EEGETADTVGCCSLR	15	Unmodified	_EEGETADTVGCCSLR_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.351076	1682.6876	2.9432	0.0024792	-2.0575	-0.0017332	0.8857	0.00074607	842.35013878337	5.576	0.15962	5.576	5.5317	5.6913	0	414	43	1.04781950764076	0.0281445259800737	1.04781950764076	423.124250148642	0	11.3651553194699						543	19	5	NaN	NaN	NaN	4.2095E-12	1	23975	160.62	153.06	1	175490			4070	651	3454	3533	4070	4070		
EEGGENLDQAR	11	Unmodified	_EEGGENLDQAR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.273281	1216.53201	1.1196	0.00068212	4.0159	0.0024468	5.1354	0.0031289	609.276682210587	2.9247	0.15962	2.9247	2.8981	3.0577	0	663	49	0.880024865079826	0.0325232324981577	0.880024865079826	356.476430430329	0	13.1743616425512						225	19	2	NaN	NaN	NaN	0.00044932	1	9912	92.732	72.498	1	46028			4071	573	3455	3534	4071	4071		
EEGIENFDVYAIK	13	Unmodified	_EEGIENFDVYAIK_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.872296	1525.73004	2.0991	0.0016034	1.1192	0.00085489	3.2182	0.0024583	763.873367028808	13.806	0.20391	13.806	13.717	13.921	0	411	49	1.04982941439551	0.0321562992894993	1.04982941439551	424.291908258155	0	12.9960709816061						526	24	4	NaN	NaN	NaN	1.797E-06	1	19289	125.17	95.416	1	243300			4072	2097	3456	3535	4072	4072		
EEGTPLTLYYSHWR	14	Unmodified	_EEGTPLTLYYSHWR_			0	0	0	Q9Y3T9	Q9Y3T9	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.617771	1750.83148	1.0435	0.00061002	-0.14353	-8.3908E-05	0.89993	0.00052611	584.951724658281	12.76	0.1419	12.76	12.68	12.822	0	603	25	0.920633820089869	0.0162210713020401	0.920633820089869	557.467472994945	0	9.82227616527973						367	17	4	NaN	NaN	NaN	0.0062258	1	25910	45.939	41.957	1	114040			4073	3399	3457	3536	4073	4073		
EEGTPLTLYYSHWR	14	Unmodified	_EEGTPLTLYYSHWR_			0	0	0	Q9Y3T9	Q9Y3T9	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.423019	1750.83148	2.6512	0.0023235	1.2568	0.0011015	3.9079	0.003425	876.925270005994	12.751	0.1419	12.751	12.68	12.822	0	276	40	1.13998907770044	0.0259601635966487	1.13998907770044	460.197225143993	0	10.4797453634913						396	17	4	NaN	NaN	NaN	0.0044325	1	25912	61.577	53.613	1	94279			4074	3399	3457	3536	4074	4074		
EEGWWVVIGDAK	12	Unmodified	_EEGWWVVIGDAK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.845884	1387.67722	0.028734	1.9965E-05	-0.29003	-0.00020153	-0.2613	-0.00018156	694.8455980767	16.315	0.14187	16.315	16.262	16.404	0	537	67	0.965173861991602	0.0444353690970316	0.965173861991602	390.426822617544	0	17.9747511319808						382	17	4	NaN	NaN	NaN	3.1874E-05	1	15070	113.46	61.587	1	106010			4075	350	3458	3537	4075	4075		
EEHEVAVLGAPHNPAPPTSTVIHIR	25	Unmodified	_EEHEVAVLGAPHNPAPPTSTVIHIR_			0	0	0	Q01628	Q01628	Q01628	IFITM3	Interferon-induced transmembrane protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	891.136542	2670.3878	2.5756	0.0022952	0.22061	0.00019659	2.7962	0.0024918	891.471091588921	9.6204	0.097531	9.6204	9.5849	9.6824	0	354	106	1.08796502040166	0.0702789414653251	1.08796502040166	657.007171430977	0	42.4404899766445						537	12	5	NaN	NaN	NaN	4.4489E-05	1	37518	34.417	33.577	1	131740			4076	1517	3459	3538	4076	4076		
EEIDHAEYYLYK	12	Unmodified	_EEIDHAEYYLYK_			0	0	0	Q92552	Q92552	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.864471	1571.71439	2.1723	0.0017093	0.24325	0.0001914	2.4156	0.0019007	786.864663733219	8.6712	0.10652	8.6712	8.6357	8.7422	0	360	28	1.08395544855938	0.0180468052044267	1.08395544855938	437.968794736696	0	7.29175496533117						211	13	3	NaN	NaN	NaN	0.058739	1	20701	43.168	35.167	1	51142			4077	2412	3460	3539	4077	4077		
EEIDLLNRDLDDIEDENEQLK	21	Unmodified	_EEIDLLNRDLDDIEDENEQLK_			0	0	1	Q96IZ0	Q96IZ0	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	853.408322	2557.20314	0.94771	0.00080878	0.8397	0.00071661	1.7874	0.0015254	853.742899639964	15.331	0.062051	15.331	15.304	15.367	0	444	43	1.02770517576159	0.0281834048046041	1.02770517576159	620.759316263327	0	17.0234727907387						245	8	4	NaN	NaN	NaN	3.3493E-16	1	37050	175.62	159.47	1	54400			4078	2563	3461	3540	4078	4078		
EEIDSILNK	9	Unmodified	_EEIDSILNK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.779679	1059.5448	0.32811	0.00017416	-2.5578	-0.0013576	-2.2297	-0.0011835	530.778388705886	9.0883	0.2129	9.0883	9.0174	9.2303	0	669	46	0.875957769340875	0.0305011094694014	0.875957769340875	355.418094337076	0	12.3757635153329						376	25	3	NaN	NaN	NaN	0.011712	1	5714	65.156	37.451	1	143420			4079	1222	3462	3541	4079	4079		
EEIFGPVQPLFK	12	Unmodified	_EEIFGPVQPLFK_			0	0	0	P30837	P30837	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.382103	1402.74965	0.36547	0.0002567	-4.639	-0.0032583	-4.2735	-0.0030016	702.379392213079	15.961	0.12413	15.961	15.934	16.058	0	489	55	0.997481546940468	0.0362909172147328	0.997481546940468	403.452991607765	0	14.6786466009156						294	15	4	NaN	NaN	NaN	0.0054732	1	15553	65.404	17.247	1	66848			4080	917	3463	3542	4080	4080		
EEIIEAFVQELR	12	Unmodified	_EEIIEAFVQELR_			0	0	0	P50552	P50552	P50552	VASP	Vasodilator-stimulated phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.390656	1474.76676	-0.28987	-0.00021404	-0.14384	-0.00010621	-0.43371	-0.00032025	738.390263627904	19.109	0.088674	19.109	19.073	19.162	0	495	46	0.993446994398923	0.0302570607134584	0.993446994398923	401.629504217499	0	12.2322865356068						270	11	3	NaN	NaN	NaN	2.4183E-07	1	17743	123.42	97.563	1	80032			4081	1166	3464	3543	4081	4081		
EEIINYEFDTK	11	Unmodified	_EEIINYEFDTK_			0	0	0	Q8TCT9	Q8TCT9	Q8TCT9	HM13	Minor histocompatibility antigen H13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.83264	1399.65073	1.6383	0.0011481	1.154	0.00080875	2.7923	0.0019569	700.83342304495	11.083	0.22167	11.083	11.021	11.243	0	489	40	0.997481546940468	0.0262227841979634	0.997481546940468	403.461688663315	0	10.6066010207559						658	26	5	NaN	NaN	NaN	2.5028E-07	1	15436	135.63	103.09	1	232020			4082	2346	3465	3544	4082	4082		
EEILENWNMFVGSQATNYGEDLTK	24	Unmodified	_EEILENWNMFVGSQATNYGEDLTK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	930.097202	2787.26978	0.63976	0.00059504	-0.13268	-0.0001234	0.50708	0.00047163	930.431068939266	18.559	0.088658	18.559	18.523	18.612	0	450	34	1.02367897599655	0.0221456308390058	1.02367897599655	618.051432245265	0	13.3705382048098						312	11	6	NaN	NaN	NaN	1.2626E-06	1	37862	67.661	62.331	1	77393			4083	1831	3466	3545	4083	4083		
EEILLACEGGTGTCVR	16	Unmodified	_EEILLACEGGTGTCVR_			0	0	0	Q9GZN8	Q9GZN8	Q9GZN8	C20orf27	UPF0687 protein C20orf27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.916386	1763.81822	3.1807	0.0028083	-5.6433	-0.0049826	-2.4626	-0.0021743	882.914765262755	9.7534	0.12413	9.7534	9.7002	9.8243	0	327	37	1.10599442759226	0.0240210084150783	1.10599442759226	446.448270513728	0	9.69637585449124						270	15	3	NaN	NaN	NaN	1.4758E-06	1	26235	104.04	102.06	1	65320			4084	2825	3467	3546	4084	4084		
EEIPEEELAEDVEEIDHAER	20	Unmodified	_EEIPEEELAEDVEEIDHAER_			0	0	0	P20020	P20020	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	794.359079	2380.05541	0.42213	0.00033532	1.0127	0.00080441	1.4348	0.0011397	794.360244897689	15.712	0.097527	15.712	15.677	15.775	0	483	25	1.00151498427745	0.0161315207878521	1.00151498427745	605.183099328108	0	9.74775605011166						186	12	4	NaN	NaN	NaN	3.7524E-06	1	36254	65.421	60.866	1	36601			4085	775	3468	3547	4085	4085		
EEIQENEEAVK	11	Unmodified	_EEIQENEEAVK_			0	0	0	Q9NYB0	Q9NYB0	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.312071	1316.60959	2.7743	0.0018291	-5.5145	-0.0036358	-2.7402	-0.0018066	659.307589798375	3.8558	0.12414	3.8558	3.8204	3.9445	0	555	34	0.953040030838688	0.0222468989208282	0.953040030838688	385.723758028336	0	9.00398428035271						200	15	3	NaN	NaN	NaN	0.0087773	1	12864	52.591	31.316	1	56064			4086	3112	3469	3548	4086	4086		
EEIQETQTPTHSR	13	Unmodified	_EEIQETQTPTHSR_			0	0	0	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.370983	1554.72741	2.7371	0.0021305	-2.1889	-0.0017038	0.5482	0.0004267	778.368582823206	2.6587	0.044324	2.6587	2.6498	2.6941	0	453	25	1.02166545906632	0.0161092490285764	1.02166545906632	412.840116829269	0	6.50951267068092						57	6	2	NaN	NaN	NaN	1.839E-05	1	20192	138	127.75	1	10931			4087	2801	3470	3549	4087	4087		
EEIQPGDIVIIDQFIDR	17	Unmodified	_EEIQPGDIVIIDQFIDR_			0	0	0	Q13126	Q13126	Q13126	MTAP	S-methyl-5-thioadenosine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.52039	1999.02622	1.1885	0.0011891	-0.87138	-0.00087183	0.31714	0.00031731	1001.02201019948	19.437	0.07087	19.437	19.401	19.472	0	186	40	1.1997861197946	0.0258640285956666	1.1997861197946	483.863722507318	0	10.4307467379914						256	9	4	NaN	NaN	NaN	9.9692E-05	1	31623	88.796	87.616	1	58058			4088	1630	3471	3550	4088	4088		
EEIQSSISGVTAAYNR	16	Unmodified	_EEIQSSISGVTAAYNR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.926123	1723.83769	3.0901	0.0026666	-3.2231	-0.0027813	-0.133	-0.00011477	863.424636661373	10.064	0.23053	10.064	9.9484	10.179	0	348	49	1.09197348738011	0.0320633273286326	1.09197348738011	440.868260794086	0	12.9450975852541						580	27	5	NaN	NaN	NaN	1.935E-08	1	25157	123.92	114.18	1	195750			4089	1095	3472	3551	4089	4089		
EEIQSSISGVTAAYNR	16	Unmodified	_EEIQSSISGVTAAYNR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.619841	1723.83769	0.62036	0.00035709	2.2938	0.0013203	2.9141	0.0016774	575.621111659181	10.073	0.14186	10.073	10.01	10.152	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	551.394153121785	0	14.7454417211989						299	17	4	NaN	NaN	NaN	0.016394	1	25159	76.255	74.271	1	85006			4090	1095	3472	3551	4090	4090		
EEISATQIIVCTPEK	15	Unmodified	_EEISATQIIVCTPEK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.437477	1716.8604	2.7866	0.0023949	-1.4219	-0.001222	1.3647	0.0011729	859.436559552366	11.172	0.16847	11.172	11.128	11.296	0	339	67	1.09798411722691	0.0440870870026808	1.09798411722691	443.30932834154	0	17.8000907490854						615	20	3	NaN	NaN	NaN	1.8725E-24	1	24965	195.09	170.27	1	182100			4091	350	3473	3552	4091	4091		
EEISEAEPGGGSLGDGRPPEESAHEMMEEEEEIPK	35	Unmodified	_EEISEAEPGGGSLGDGRPPEESAHEMMEEEEEIPK_			0	0	1	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	946.163641	3780.62546	1.1775	0.0011141	0.91939	0.0008699	2.0969	0.001984	946.665771629965	11.695	0.10639	11.695	11.624	11.731	0	483	70	1.00151498427745	0.0463877641696587	1.00151498427745	805.172974074216	0	37.2936747063089						704	13	6	NaN	NaN	NaN	0.00033348	1	38730	31.344	31.338	1	170500			4092	709	3474	3553	4092	4092		
EELDFQK	7	Unmodified	_EELDFQK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.721633	907.428712	-0.13498	-6.1378E-05	0.97252	0.00044223	0.83754	0.00038085	454.722057838182	5.6736	0.2306	5.6736	5.6381	5.8687	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	330.48936112186	0	8.30564962196308						262	27	2	NaN	NaN	NaN	0.028411	1	2452	51.456	13.848	1	100780			4093	493	3475	3554	4093	4093		
EELEALFLPYDLK	13	Unmodified	_EELEALFLPYDLK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.416339	1578.81813	1.1663	0.00092186	-2.3663	-0.0018704	-1.2	-0.00094851	790.414586371037	18.718	0.10639	18.718	18.683	18.789	0	369	37	1.07793901817685	0.0240707016465822	1.07793901817685	435.520769768035	0	9.72530944070178						211	13	2	NaN	NaN	NaN	3.01E-07	1	20940	106	90.855	1	118630			4094	2841	3476	3555	4094	4094		
EELEFEVPFR	10	Unmodified	_EELEFEVPFR_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.819335	1293.62412	0.87482	0.00056673	-0.67916	-0.00043997	0.19566	0.00012675	647.818867225047	15.163	0.19508	15.163	15.083	15.278	0	564	37	0.946969335010767	0.0242844683109597	0.946969335010767	383.337462606984	0	9.83046242249981						426	23	4	NaN	NaN	NaN	3.911E-11	1	12178	188.98	169.72	1	149650			4095	3430	3477	3556	4095	4095		
EELEGQLGPMAQETQAR	17	Unmodified	_EELEGQLGPMAQETQAR_			0	0	0	CON__Q03247	CON__Q03247	CON__Q03247			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.949272	1885.88399	2.3346	0.0022037	-0.38954	-0.00036771	1.945	0.001836	944.45077440831	9.5406	0.2128	9.5406	9.4608	9.6736	0	294	76	1.12800004657306	0.0499577676911505	1.12800004657306	455.101157018507	0	20.1558838116871						634	25	2	NaN	NaN	NaN	6.1318E-07	1	29280	124.24	115.08	1	230470		+	4096	35	3478	3557	4096	4096		
EELEQASQAHGAR	13	Unmodified	_EELEQASQAHGAR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.339486	1424.66442	2.1931	0.0015644	-2.5275	-0.001803	-0.33447	-0.00023859	713.337641687825	2.5168	0.070945	2.5168	2.5079	2.5789	0	501	22	0.98941132619024	0.0141277691793039	0.98941132619024	400.128709106365	0	5.71342362335218						62	9	2	NaN	NaN	NaN	4.1199E-05	1	16216	94.791	86.79	1	11431			4097	1782	3479	3558	4097	4097		
EELEQASQAHGAR	13	Unmodified	_EELEQASQAHGAR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.895416	1424.66442	-0.57909	-0.00027559	1.8113	0.00086198	1.2322	0.0005864	475.896138991214	2.5168	0.14191	2.5168	2.4902	2.6321	0	774	22	0.804600385996946	0.0143072230251827	0.804600385996946	488.080394009687	0	8.67893574605137						151	17	3	NaN	NaN	NaN	0.00037649	1	16217	83.358	80.255	1	28377			4098	1782	3479	3558	4098	4098		
EELEQTYHAK	10	Unmodified	_EELEQTYHAK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.534937	1246.58298	-0.59517	-0.00024791	1.3094	0.0005454	0.7142	0.00029749	416.535544426745	2.9779	0.088668	2.9779	2.9602	3.0488	-4.4409E-16	849	19	0.753417699604308	0.0123035321280257	0.753417699604308	457.658621426503	0	7.47369958967806						67	11	2	NaN	NaN	NaN	0.070802	1	10811	23.053	18.525	1	14921			4099	784	3480	3559	4099	4099		
EELEQTYHAK	10	Unmodified	_EELEQTYHAK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.298767	1246.58298	2.8231	0.0017625	-2.0009	-0.0012492	0.82221	0.0005133	624.297351661069	2.9779	0.31921	2.9779	2.9424	3.2617	0	576	49	0.938871150116794	0.0324106998985512	0.938871150116794	380.210775765238	0	13.1252274073919						623	37	4	NaN	NaN	NaN	2.6756E-10	1	10812	154.35	113.33	1	188930			4100	784	3480	3559	4100	4100		
EELFQGDAFHQSDTHIFIIMGASGDLAK	28	Unmodified	_EELFQGDAFHQSDTHIFIIMGASGDLAK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	770.122285	3076.46004	0.36205	0.00027883	0.82657	0.00063656	1.1886	0.00091539	770.375279160752	16.635	0.12412	16.635	16.599	16.723	0	489	43	0.997481546940468	0.0282496839404589	0.997481546940468	802.603428480645	0	22.7305389795447						236	15	5	NaN	NaN	NaN	0.00049229	1	38320	33.373	27.069	1	37914			4101	653	3481	3560	4101	4101		
EELFQGDAFHQSDTHIFIIMGASGDLAK	28	Unmodified	_EELFQGDAFHQSDTHIFIIMGASGDLAK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1026.49396	3076.46004	1.0884	0.0011173	0.63449	0.0006513	1.7229	0.0017686	1026.82966619073	16.644	0.097547	16.644	16.617	16.714	0	240	25	1.16393748060522	0.0159524375137323	1.16393748060522	702.405167036826	0	9.6268697616398						205	12	4	NaN	NaN	NaN	0.056993	1	38321	2.7856	2.6815	1	36683			4102	653	3481	3560	4102	4102		
EELGDEWLKPELFR	14	Unmodified	_EELGDEWLKPELFR_			0	0	1	Q9Y315	Q9Y315	Q9Y315	DERA	Deoxyribose-phosphate aldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.63331	1759.8781	0.33349	0.00019597	-0.96946	-0.00056969	-0.63597	-0.00037372	587.966759774993	15.491	0.070936	15.491	15.464	15.535	0	642	37	0.894250814548268	0.0243788876669334	0.894250814548268	541.47004421963	0	14.7614485424965						190	9	3	NaN	NaN	NaN	0.0047642	1	26140	39.702	38.964	1	45801			4103	3364	3482	3561	4103	4103		
EELGFRPEYSASQLK	15	Unmodified	_EELGFRPEYSASQLK_			0	0	1	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.296698	1752.86826	-0.46005	-0.00026927	0.10756	6.2955E-05	-0.35249	-0.00020631	585.630989620834	9.2745	0.12418	9.2745	9.2391	9.3632	0	690	40	0.86171403876517	0.0264673426716941	0.86171403876517	521.78527013059	0	16.0265110283904						271	15	3	NaN	NaN	NaN	0.022201	1	25973	42.446	32.196	1	58012			4104	611	3483	3562	4104	4104		
EELGLIEQAYDNPHEALSR	19	Unmodified	_EELGLIEQAYDNPHEALSR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.690435	2183.04948	0.86365	0.00062933	1.3644	0.0009942	2.228	0.0016235	729.025692184501	12.405	0.088661	12.405	12.361	12.449	0	504	40	0.987393073566096	0.0262409175570258	0.987393073566096	596.961963176661	0	15.864836486875						449	11	5	NaN	NaN	NaN	1.1884E-19	1	34495	150.81	140.05	1	214250			4105	2064	3484	3563	4105	4105		
EELGLIEQAYDNPHEALSR	19	Unmodified	_EELGLIEQAYDNPHEALSR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.53201	2183.04948	0.90795	0.00099196	1.3956	0.0015247	2.3035	0.0025167	1093.0347591201	12.405	0.053187	12.405	12.378	12.431	0	138	52	1.23157729878518	0.0337341480228655	1.23157729878518	496.395991738633	0	13.5967883459575						288	7	4	NaN	NaN	NaN	0.04444	1	34496	23.432	22.734	1	56351			4106	2064	3484	3563	4106	4106		
EELHQDCLVLATAK	14	Unmodified	_EELHQDCLVLATAK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.943379	1625.80831	-0.47942	-0.0002603	-0.3534	-0.00019188	-0.83282	-0.00045218	542.942962894986	7.7753	0.11533	7.7753	7.7309	7.8463	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	488.738316015165	0	9.90492400494912						232	14	4	NaN	NaN	NaN	0.0015003	1	22357	50.116	45.287	1	63555			4107	2355	3485	3564	4107	4107		
EELHQDCLVLATAK	14	Unmodified	_EELHQDCLVLATAK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.91143	1625.80831	3.3481	0.002725	-1.8559	-0.0015105	1.4922	0.0012145	813.910393251381	7.7753	0.13305	7.7753	7.7309	7.864	0	351	34	1.08996939197032	0.0220480903949298	1.08996939197032	440.270722353795	0	8.90587273019673						358	16	4	NaN	NaN	NaN	0.00015155	1	22360	58.338	53.509	1	87851			4108	2355	3485	3564	4108	4108		
EELIAELQDCEGLIVR	16	Unmodified	_EELIAELQDCEGLIVR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.980041	1885.94553	0.95719	0.00090357	6.4524	0.006091	7.4096	0.0069945	943.989743933712	17.016	0.21284	17.016	16.901	17.114	0	237	70	1.16593139812432	0.0458349311697122	1.16593139812432	470.404745922539	0	18.4924852233601						907	25	4	NaN	NaN	NaN	2.0614E-08	1	29288	112.73	90.585	1	361820			4109	189	3486	3565	4109	4109		
EELIEEWQPEPLVPPVPK	18	Unmodified	_EELIEEWQPEPLVPPVPK_			0	0	0	O15269	O15269	O15269	SPTLC1	Serine palmitoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.06189	2128.10922	-0.21001	-0.00022368	-1.1987	-0.0012767	-1.4087	-0.0015004	1065.56216624385	17.043	0.11526	17.043	16.989	17.105	0	135	37	1.23356193185193	0.0238107034371058	1.23356193185193	497.277075823532	0	9.59864006238359						304	14	4	NaN	NaN	NaN	0.0015877	1	33716	53.051	52.108	1	60219			4110	159	3487	3566	4110	4110		
EELLAEFGSGTLDLPALTR	19	Unmodified	_EELLAEFGSGTLDLPALTR_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.53349	2031.05244	1.2434	0.0012639	-0.54151	-0.00055046	0.70185	0.00071346	1017.03448658011	19.41	0.13305	19.41	19.357	19.49	0	168	58	1.21171599086077	0.0377649812720997	1.21171599086077	488.621796507135	0	15.2286452711771						551	16	4	NaN	NaN	NaN	1.8561E-10	1	32175	111.98	100.77	1	118750			4111	1298	3488	3567	4111	4111		
EELLEYEEK	9	Unmodified	_EELLEYEEK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.282251	1180.54995	1.9151	0.0011323	1.4947	0.00088378	3.4097	0.0020161	591.283251771937	7.6511	0.13309	7.6511	7.6156	7.7487	0	549	31	0.957085760909907	0.0202286526818168	0.957085760909907	387.824439516716	0	8.19693094278773						177	16	3	NaN	NaN	NaN	0.0081255	1	8886	54.436	21.041	1	45569			4112	1072	3489	3568	4112	4112		
EELLFMK	7	Unmodified	_EELLFMK_			0	0	0	CON__P05784;P05783;CON__H-INV:HIT000015463	CON__P05784;P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.241147	908.46774	-1.5827	-0.00072052	-1.1202	-0.00050997	-2.7029	-0.0012305	455.240609396758	11.837	0.15965	11.837	11.784	11.944	0	753	34	0.81889964927511	0.0224577750816375	0.81889964927511	332.974868750457	0	9.13161303323909						312	19	4	NaN	NaN	NaN	0.016343	1	2478	69.093	51.399	1	97516		+	4113	536;27	3490	3569	4113	4113		
EELNAISGPNEFAEFYNR	18	Unmodified	_EELNAISGPNEFAEFYNR_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.48708	2098.9596	2.4351	0.002558	0.17267	0.00018138	2.6078	0.0027394	1050.98923922701	15.065	0.2217	15.065	14.976	15.198	0	174	79	1.20774045859593	0.0516748692120943	1.20774045859593	486.911683032735	0	20.8331991856998						967	26	4	NaN	NaN	NaN	4.1111E-10	1	33290	135.24	124.27	1	332940			4114	1601	3491	3570	4114	4114		
EELQLLQEQGSYVGEVVR	18	Unmodified	_EELQLLQEQGSYVGEVVR_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.53403	2075.0535	0.69033	0.00071693	-1.8374	-0.0019082	-1.1471	-0.0011913	1039.03492946033	14.861	0.088656	14.861	14.817	14.905	0	180	52	1.203763835057	0.0337989921039494	1.203763835057	485.345224154329	0	13.6274067397156						294	11	4	NaN	NaN	NaN	9.9401E-07	1	32947	77.431	61.903	1	88027			4115	1369	3492	3571	4115	4115		
EELQSGVDAANSAAQQYQR	19	Unmodified	_EELQSGVDAANSAAQQYQR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.98269	2063.95082	2.6714	0.0027595	-1.8768	-0.0019387	0.79463	0.00082084	1033.48221631545	8.4406	0.17736	8.4406	8.3608	8.5382	0	246	85	1.1599488233373	0.0558950184639393	1.1599488233373	467.696184168748	0	22.5371036408426						953	21	5	NaN	NaN	NaN	3.0574E-11	1	32767	133.13	112.79	1	274810			4116	1095	3493	3572	4116	4116		
EELQSQVELLNSFEK	15	Unmodified	_EELQSQVELLNSFEK_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.951806	1791.88906	1.18	0.0010584	-0.012311	-1.1043E-05	1.1677	0.0010473	896.949206894476	14.746	0.18624	14.746	14.693	14.879	0	282	73	1.13599383354359	0.0479891610535439	1.13599383354359	458.501849088494	0	19.3690479908852						385	22	3	NaN	NaN	NaN	2.6692E-13	1	27024	128.46	109.65	1	88274			4117	883	3494	3573	4117	4117		
EELSALVAPAFAHTSQVLVDK	21	Unmodified	_EELSALVAPAFAHTSQVLVDK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	742.398593	2224.17395	0.49051	0.00036416	-1.6706	-0.0012403	-1.1801	-0.0008761	742.731985310477	16.174	0.1951	16.174	16.049	16.245	0	573	67	0.940896116921038	0.0445523806599541	0.940896116921038	568.784210364067	0	26.9325063604635						882	23	4	NaN	NaN	NaN	0.00038361	1	34935	62.494	60.253	1	271080			4118	867	3495	3574	4118	4118		
EELSEEGYLAK	11	Unmodified	_EELSEEGYLAK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.306258	1266.59796	1.6113	0.0010221	0.66816	0.00042382	2.2795	0.0014459	634.30788963179	7.261	0.16848	7.261	7.2077	7.3762	0	543	31	0.961130371139249	0.0202230534711471	0.961130371139249	389.157607633544	0	8.18822851113157						192	20	3	NaN	NaN	NaN	0.004159	1	11403	47.561	30.166	1	76424			4119	849	3496	3575	4119	4119		
EELSNVLAAMR	11	Unmodified	_EELSNVLAAMR_			0	0	0	Q9Y3U8	Q9Y3U8	Q9Y3U8	RPL36	60S ribosomal protein L36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.818812	1231.62307	1.6619	0.0010251	-1.4684	-0.00090575	0.19349	0.00011935	616.818211708556	13.841	0.18624	13.841	13.788	13.974	0	588	67	0.93076847747433	0.0445585519618686	0.93076847747433	376.979615289677	0	18.0470935393421						954	22	5	NaN	NaN	NaN	2.9927E-23	1	10363	238.54	194.81	1	758910			4120	3400	3497	3576	4120	4120		
EELTLEGIR	9	Unmodified	_EELTLEGIR_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.287671	1058.56079	0.40804	0.00021638	-2.0145	-0.0010683	-1.6064	-0.00085188	530.2878684579	10.285	0.22165	10.285	10.214	10.436	0	642	40	0.894250814548268	0.0264122944165538	0.894250814548268	362.844785588787	0	10.7168628180937						354	26	3	NaN	NaN	NaN	7.0025E-06	1	5687	137.88	107.32	1	158940			4121	1311	3498	3577	4121	4121		
EEMHLEDSANFIK	13	Unmodified	_EEMHLEDSANFIK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.576696	1561.70826	0.40018	0.00020873	0.41632	0.00021714	0.8165	0.00042587	521.577298376107	9.7889	0.12413	9.7889	9.7445	9.8686	0	723	55	0.839303037468863	0.0367107961141576	0.839303037468863	508.702215055499	0	22.2504416951019						325	15	4	NaN	NaN	NaN	0.00095089	1	20384	101.82	95.951	1	79195			4122	730	3499	3578	4122	4122		
EEMHLEDSANFIK	13	Unmodified	_EEMHLEDSANFIK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.861405	1561.70826	2.6413	0.0020651	1.3844	0.0010824	4.0257	0.0031475	781.861954913272	9.7711	0.079802	9.7711	9.7445	9.8243	0	360	46	1.08395544855938	0.0300780138159316	1.08395544855938	437.993296794379	0	12.1536069123277						243	10	3	NaN	NaN	NaN	2.5577E-07	1	20386	128.97	112.32	1	51652			4123	730	3499	3578	4123	4123		
EEMIHNLQ	8	Unmodified	_EEMIHNLQ_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.239667	1012.46478	-0.22386	-0.00011355	1.2876	0.00065312	1.0637	0.00053957	507.240145018447	5.913	0.17741	5.913	5.8598	6.0372	0	723	52	0.839303037468863	0.0346496301199423	0.839303037468863	340.748597993029	0	14.0674015906744						290	21	2	NaN	NaN	NaN	0.021141	1	4560	56.091	41.555	1	116200			4124	64	3500	3579	4124	4124		
EEMQSNVEVVHTYR	14	Unmodified	_EEMQSNVEVVHTYR_			0	0	0	Q92597	Q92597	Q92597	NDRG1	Protein NDRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.901593	1719.78863	3.7199	0.0032025	-3.0809	-0.0026524	0.639	0.00055012	861.400907486372	6.0195	0.19503	6.0195	5.9663	6.1614	0	351	40	1.08996939197032	0.0260604263960942	1.08996939197032	440.067400734722	0	10.5217120688467						471	23	5	NaN	NaN	NaN	1.8293E-11	1	25044	137.58	123.12	1	129660			4125	2414	3501	3580	4125	4125		
EENAEQQALAAK	12	Unmodified	_EENAEQQALAAK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.320231	1300.62591	2.4698	0.0016086	-1.8715	-0.0012189	0.59835	0.00038971	651.319380121229	4.3701	0.2216	4.3701	4.2904	4.512	0	543	52	0.961130371139249	0.0343815779756202	0.961130371139249	389.047788578141	0	13.917026535523						401	26	4	NaN	NaN	NaN	0.037385	1	12363	46.033	40.882	1	124460			4126	3321	3502	3581	4126	4126		
EENGVLVLNDANFDNFVADK	20	Unmodified	_EENGVLVLNDANFDNFVADK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1112.03185	2222.04914	0.18185	0.00020222	0.75175	0.00083597	0.93359	0.0010382	1112.53358721231	16.839	0.15078	16.839	16.794	16.945	0	90	73	1.26329880838669	0.0475627259919114	1.26329880838669	509.125060798675	0	19.1683674532292						667	18	6	NaN	NaN	NaN	8.8469E-08	1	34914	102.55	96.347	1	154140			4127	680	3503	3582	4127	4127		
EENISCDNLVLEINSLK	17	Unmodified	_EENISCDNLVLEINSLK_			0	0	0	Q13144	Q13144	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.493512	1988.97247	0.89787	0.00089382	1.7166	0.0017089	2.6145	0.0026027	995.996017275805	16.28	0.044324	16.28	16.245	16.289	0	198	40	1.1918274123006	0.025878237088949	1.1918274123006	480.670787946361	0	10.4368405054527						160	6	4	NaN	NaN	NaN	0.0024486	1	31435	70.552	68.964	1	33602			4128	1633	3504	3583	4128	4128		
EENMDTSNTSISK	13	Unmodified	_EENMDTSNTSISK_			0	0	0	Q4G0J3	Q4G0J3	Q4G0J3	LARP7	La-related protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.317028	1454.6195	1.9416	0.0014141	-1.2538	-0.00091313	0.6878	0.00050093	728.316016542863	3.6253	0.079782	3.6253	3.6076	3.6874	0	528	25	0.971237000454584	0.0161650151283204	0.971237000454584	392.70102764982	0	6.53601340341766						132	10	3	NaN	NaN	NaN	0.0031685	1	17087	71.219	61.705	1	24320			4129	1940	3505	3584	4129	4129		
EENPESDGEPVVEDGTSVK	19	Unmodified	_EENPESDGEPVVEDGTSVK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.94765	2015.88074	2.1753	0.0021948	-2.3287	-0.0023496	-0.15342	-0.00015479	1009.44676819556	6.6225	0.053199	6.6225	6.5959	6.6491	0	267	31	1.14597988355104	0.0199597456368612	1.14597988355104	462.137473116862	0	8.04913467075141						121	7	3	NaN	NaN	NaN	0.071433	1	31904	19.51	15.66	1	19526			4130	1668	3506	3585	4130	4130		
EENSGLLQELEELRK	15	Unmodified	_EENSGLLQELEELRK_			0	0	1	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.310896	1785.91086	-0.19918	-0.00011877	-1.7037	-0.0010159	-1.9029	-0.0011347	596.309766602015	14.498	0.13301	14.498	14.435	14.568	-1.7764E-15	690	31	0.86171403876517	0.0203609064422459	0.86171403876517	521.709599726678	0	12.3271524800483						311	16	5	NaN	NaN	NaN	9.7032E-09	1	26854	121.71	106.56	1	101410			4131	914	3507	3586	4131	4131		
EENSTEEQALEDQNAK	16	Unmodified	_EENSTEEQALEDQNAK_			0	0	0	Q9NQZ2	Q9NQZ2	Q9NQZ2	UTP3	Something about silencing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.900499	1833.78644	2.9807	0.0027359	-1.5994	-0.0014681	1.3812	0.0012678	917.899291927325	4.6627	0.088669	4.6627	4.6273	4.7159	0	363	34	1.08195024817156	0.0220602476695482	1.08195024817156	436.612535587794	0	8.90223990148667						226	11	4	NaN	NaN	NaN	2.4417E-06	1	28070	93.649	90.755	1	51453			4132	3007	3508	3587	4132	4132		
EENTIILQQLLPLR	14	Unmodified	_EENTIILQQLLPLR_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.488162	1678.96177	1.7159	0.0014422	-2.6395	-0.0022185	-0.9237	-0.00077636	840.485854206731	18.674	0.10641	18.674	18.621	18.727	0	330	49	1.10399226369747	0.0320368379647857	1.10399226369747	445.815681828184	0	12.9371601872057						407	13	4	NaN	NaN	NaN	4.5472E-12	1	23895	156.14	125.79	1	140700			4133	2804	3509	3588	4133	4133		
EENVGLHQTLDQTLNELNCI	20	Unmodified	_EENVGLHQTLDQTLNELNCI_			0	0	0	P67936	P67936	P67936	TPM4	Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.709389	2339.10634	-0.83865	-0.00065474	0.38195	0.00029819	-0.4567	-0.00035655	781.044230803188	17.991	0.070941	17.991	17.956	18.027	0	627	28	0.90440375274676	0.0182676885200254	0.90440375274676	546.55743042207	0	11.0396942371507						172	9	4	NaN	NaN	NaN	4.7846E-06	1	35956	89.359	87.388	1	36331			4134	1443	3510	3589	4134	4134		
EENVGLHQTLDQTLNELNCI	20	Unmodified	_EENVGLHQTLDQTLNELNCI_			0	0	0	P67936	P67936	P67936	TPM4	Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1170.56045	2339.10634	0.81903	0.00095873	1.3197	0.0015448	2.1388	0.0025035	1171.06280765076	17.991	0.19505	17.991	17.938	18.133	0	75	70	1.27319752866042	0.0455466139256677	1.27319752866042	512.95477495687	0	18.3501401552905						1159	23	7	NaN	NaN	NaN	4.4391E-29	1	35957	200.96	192.59	1	525310			4135	1443	3510	3589	4135	4135		
EEPEPLSPELEYIPR	15	Unmodified	_EEPEPLSPELEYIPR_			0	0	0	Q8N490	Q8N490	Q8N490	PNKD	Probable hydrolase PNKD	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.448899	1796.88325	2.082	0.0018727	0.93884	0.00084444	3.0209	0.0027171	899.449010993293	14.329	0.21279	14.329	14.223	14.435	0	297	73	1.12600091227925	0.0479693534210168	1.12600091227925	454.458873058144	0	19.3606399953224						539	25	4	NaN	NaN	NaN	4.6889E-05	1	27137	97.175	89.21	1	130570			4136	2251	3511	3590	4136	4136		
EEPFFPPPEEFVFIHAVPVEER	22	Unmodified	_EEPFFPPPEEFVFIHAVPVEER_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	881.103957	2640.29004	0.87741	0.00077309	-0.018126	-1.5971E-05	0.85929	0.00075712	881.438133875979	19.029	0.18621	19.029	18.949	19.135	0	522	76	0.975277694896658	0.0504842709886018	0.975277694896658	588.991609621628	0	30.4885595002783						818	22	4	NaN	NaN	NaN	0.00045586	1	37395	39.483	36.738	1	169240			4137	1919	3512	3591	4137	4137		
EEPGSDSGTTAVVALIR	17	Unmodified	_EEPGSDSGTTAVVALIR_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.436323	1700.85809	2.0895	0.0017791	-1.1749	-0.0010004	0.91458	0.00077871	851.435259702798	12.972	0.15961	12.972	12.893	13.052	0	366	55	1.07994477139643	0.0361060601880221	1.07994477139643	436.058822938873	0	14.5788622932918						622	19	3	NaN	NaN	NaN	1.097E-06	1	24520	89.382	77.425	1	254290			4138	166	3513	3592	4138	4138		
EEPGSDSGTTAVVALIR	17	Unmodified	_EEPGSDSGTTAVVALIR_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.436323	1700.85809	1.8286	0.001557	0.55727	0.00047448	2.3859	0.0020314	851.436568895023	12.972	0.10641	12.972	12.937	13.043	0	195	61	1.19381749893585	0.039826354451779	1.19381749893585	482.038211472313	0	16.0810380870698						341	13	3	NaN	NaN	NaN	9.2754E-05	1	24521	85.813	79.437	1	75732			4139	166	3513	3592	4139	4139		
EEPIPCTAHWHFGQ	14	Unmodified	_EEPIPCTAHWHFGQ_			0	0	0	P16083	P16083	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.256068	1707.74637	-1.6755	-0.00095544	-0.0011433	-6.5197E-07	-1.6766	-0.0009561	570.256502247062	10.605	0.053193	10.605	10.587	10.64	0	786	34	0.796423123669906	0.0224890390033184	0.796423123669906	482.350160797127	0	13.620387526467						137	7	3	NaN	NaN	NaN	0.0035145	1	24692	45.939	43.956	1	23312			4140	722	3514	3593	4140	4140		
EEPLHSIISSTESVQGSTSK	20	Unmodified	_EEPLHSIISSTESVQGSTSK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.018329	2115.03316	1.1653	0.00082271	-0.30434	-0.00021487	0.86095	0.00060784	706.352408159946	10.41	0.57637	10.41	10.285	10.862	0	621	46	0.908462957275599	0.0304461528019007	0.908462957275599	549.353658209413	0	18.4109933004708						1143	66	4	NaN	NaN	NaN	7.6068E-11	1	33544	158.02	148.86	1	398720			4141	1608	3515	3594	4141	4141		
EEQFNMLSSDLEK	13	Unmodified	_EEQFNMLSSDLEK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.358696	1568.70284	1.498	0.0011765	2.3401	0.0018378	3.8381	0.0030143	785.361013385394	12.121	0.13303	12.121	12.077	12.21	0	366	31	1.07994477139643	0.0200561522597538	1.07994477139643	436.355601060193	0	8.10376104969077						323	16	4	NaN	NaN	NaN	3.3278E-05	1	20609	94.791	82.773	1	87543			4142	914	3516	3595	4142	4142		
EEQHANTSANYDVELLHHK	19	Unmodified	_EEQHANTSANYDVELLHHK_			0	0	0	Q9NVM9	Q9NVM9	Q9NVM9	ASUN	Protein asunder homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.685684	2234.03522	1.6572	0.0012358	0.63282	0.00047188	2.29	0.0017076	745.685853680185	5.6292	0.07098	5.6292	5.5937	5.6647	0	513	22	0.981336640919867	0.0141355861424926	0.981336640919867	593.214794411642	0	8.54491565661556						150	9	4	NaN	NaN	NaN	0.001625	1	35024	48.363	48.253	1	31525			4143	3070	3517	3596	4143	4143		
EEQHQLAVTAYLK	13	Unmodified	_EEQHQLAVTAYLK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.603462	1528.78856	-1.6912	-0.00086352	-1.2748	-0.00065093	-2.966	-0.0015144	510.602785841479	9.3455	0.11533	9.3455	9.3011	9.4164	0	765	28	0.810730346695089	0.0183873254729269	0.810730346695089	491.477151054454	0	11.1466782707517						213	14	4	NaN	NaN	NaN	0.036657	1	19387	29.317	28.06	1	47862			4144	1728	3518	3597	4144	4144		
EEQHQLAVTAYLK	13	Unmodified	_EEQHQLAVTAYLK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.603462	1528.78856	-0.69265	-0.00035367	0.87163	0.00044506	0.17898	9.1387E-05	510.603680315937	9.3455	0.10646	9.3455	9.3011	9.4076	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	521.150012391445	0	11.1095549059513						148	13	2	NaN	NaN	NaN	0.0582	1	19388	17.731	15.06	1	38164			4145	1728	3518	3597	4145	4145		
EEQHQLAVTAYLK	13	Unmodified	_EEQHQLAVTAYLK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.401555	1528.78856	2.1437	0.0016408	-0.87479	-0.00066956	1.2689	0.00097122	765.401505752553	9.3366	0.21286	9.3366	9.2834	9.4962	0	345	40	1.09397730668811	0.0260496561958328	1.09397730668811	442.126474518947	0	10.5278624939317						422	25	3	NaN	NaN	NaN	1.1605E-11	1	19391	140.57	113.62	1	132200			4146	1728	3518	3597	4146	4146		
EEQMAEYQFKRR	12	Oxidation (M)	_EEQM(Oxidation (M))AEYQFKRR_	EEQM(1)AEYQFKRR	EEQM(41)AEYQFKRR	0	1	2		REV__Q9UBB9	REV__Q9UBB9			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.25959	1629.75694	-0.26847	-0.00014612	6.2439	0.0033983	5.9754	0.0032522	544.262860430024	3.0134	0.10642	3.0134	2.9956	3.102	0	792	22	0.792332785124922	0.0143191751131978	0.792332785124922	480.057444301579	0	8.67568115115256						195	13	4	NaN	NaN	NaN	0.073069	1	22462	40.502	18.459	1	44360	+		4147	3516	3519	3598	4147	4147	656	
EEQMSQAQLFTR	12	Unmodified	_EEQMSQAQLFTR_			0	0	0	Q5T1C6	Q5T1C6	Q5T1C6	THEM4	Acyl-coenzyme A thioesterase THEM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.348465	1466.68238	1.2802	0.00094008	-1.9186	-0.0014089	-0.63845	-0.00046885	734.347395481275	8.7422	0.19526	8.7422	8.618	8.8133	0	474	37	1.00756305028564	0.024180571015918	1.00756305028564	407.357201997569	0	9.77619192064992						240	23	3	NaN	NaN	NaN	0.00053416	1	17473	73.655	65.181	1	51610			4148	1986	3520	3599	4148	4148		
EEQQLQGNINELK	13	Unmodified	_EEQQLQGNINELK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.891552	1541.76855	1.9629	0.0015151	-0.78087	-0.00060275	1.182	0.00091237	771.891492677309	7.5181	0.11527	7.5181	7.4738	7.589	8.8818E-16	411	52	1.04982941439551	0.0341495757377568	1.04982941439551	424.252227723505	0	13.8003692637038						307	14	3	NaN	NaN	NaN	0.00019283	1	19778	94.791	66.464	1	80986			4149	1810	3521	3600	4149	4149		
EESAASGGAAYTK	13	Unmodified	_EESAASGGAAYTK_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.285857	1240.55716	2.0967	0.0013026	-1.5112	-0.00093887	0.58552	0.00036378	621.284797811181	2.4281	0.23058	2.4281	2.4015	2.6321	0	618	28	0.910492137470517	0.0182651557513902	0.910492137470517	368.737860173092	0	7.3971582733343						190	27	3	NaN	NaN	NaN	0.0055488	1	10625	67.548	63.345	1	29239			4150	3355	3522	3601	4150	4150		
EESDDEAAVEEEEEEK	16	Unmodified	_EESDDEAAVEEEEEEK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.865987	1865.71742	3.7046	0.0034596	-1.6908	-0.001579	2.0138	0.0018806	933.864610698681	5.1681	0.35471	5.1681	5.0972	5.4519	0	339	112	1.09798411722691	0.0741823105919903	1.09798411722691	443.02594755307	0	29.931843207984						1909	41	6	NaN	NaN	NaN	3.8755E-56	1	28821	306.66	303.15	1	1164700			4151	700	3523	3602	4151	4151		
EESQIPVDEVFFHR	14	Unmodified	_EESQIPVDEVFFHR_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.94941	1730.8264	-0.69222	-0.00040007	-0.62524	-0.00036136	-1.3175	-0.00076142	578.283375621917	13.274	0.14187	13.274	13.185	13.327	0	699	52	0.85560534332665	0.034615952502899	0.85560534332665	518.138045478419	0	20.9627512405313						422	17	4	NaN	NaN	NaN	0.00010343	1	25344	71.066	68.677	1	113260			4152	1540	3524	3603	4152	4152		
EESSELEQPFAQDTSSVGPDR	21	Unmodified	_EESSELEQPFAQDTSSVGPDR_			0	0	0	Q15424;Q14151	Q15424;Q14151	Q15424	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1154.51422	2307.01388	1.2237	0.0014128	0.13065	0.00015084	1.3544	0.0015637	1155.01551156044	10.516	0.053206	10.516	10.489	10.543	0	123	58	1.24149774378079	0.0376770419000658	1.24149774378079	500.224445187057	0	15.1808390109146						211	7	3	NaN	NaN	NaN	3.7186E-11	1	35685	119.58	110.45	1	33312			4153	1846;1727	3525	3604	4153	4153		
EESSELEQPFAQDTSSVGPDR	21	Unmodified	_EESSELEQPFAQDTSSVGPDR_			0	0	0	Q15424;Q14151	Q15424;Q14151	Q15424	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.011903	2307.01388	1.3362	0.0010289	0.83433	0.00064244	2.1705	0.0016713	770.346678174714	10.516	0.08873	10.516	10.48	10.569	0	594	34	0.926715457081489	0.0222931596374992	0.926715457081489	560.087016992652	0	13.4735092474129						281	11	5	NaN	NaN	NaN	4.8975E-08	1	35686	108.34	102.43	1	72238			4154	1846;1727	3525	3604	4154	4154		
EESSELEQPFAQDTSSVGPDRK	22	Unmodified	_EESSELEQPFAQDTSSVGPDRK_			0	0	1	Q15424;Q14151	Q15424;Q14151	Q15424	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	812.710224	2435.10884	1.6089	0.0013075	0.29084	0.00023637	1.8997	0.0015439	813.04474958736	8.8487	0.11542	8.8487	8.7955	8.9109	0	570	37	0.942920803299286	0.0242979231728671	0.942920803299286	569.701788979399	0	14.6805227455277						405	14	5	NaN	NaN	NaN	2.1588E-11	1	36503	115.24	111.48	1	112340			4155	1846;1727	3526	3605	4155	4155		
EESTTGNANLLEK	13	Unmodified	_EESTTGNANLLEK_			0	0	0	Q76FK4	Q76FK4	Q76FK4	NOL8	Nucleolar protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.343903	1404.67325	1.2345	0.00086829	0.33458	0.00023533	1.5691	0.0011036	703.344452065026	5.4608	0.12413	5.4608	5.3898	5.5139	0	495	25	0.993446994398923	0.0161382113226246	0.993446994398923	401.815738336246	0	6.52736113208562						131	15	3	NaN	NaN	NaN	0.0048074	1	15605	63.212	42.978	1	28223			4156	2106	3527	3606	4156	4156		
EETAQLTGPEAGR	13	Unmodified	_EETAQLTGPEAGR_			0	0	0	P48634	P48634	P48634	PRRC2A	Protein PRRC2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.830963	1357.64737	1.8629	0.0012665	1.3196	0.00089714	3.1826	0.0021636	679.832606735623	4.6007	0.11528	4.6007	4.5475	4.6627	0	576	37	0.938871150116794	0.0242979231728671	0.938871150116794	379.869851896887	0	9.83100660397406						181	14	2	NaN	NaN	NaN	0.00049681	1	14127	58.476	54.868	1	45768			4157	1111	3528	3607	4157	4157		
EETEENSHCDANTEMQQILTR	21	Unmodified	_EETEENSHCDANTEMQQILTR_			0	0	0	Q13823	Q13823	Q13823	GNL2	Nucleolar GTP-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	845.695591	2534.06494	1.3031	0.001102	0.84959	0.00071849	2.1527	0.0018205	846.030775572149	9.5938	0.070942	9.5938	9.5583	9.6292	0	525	31	0.973257487423603	0.020206269780618	0.973257487423603	587.900580603801	0	12.205688514464						245	9	4	NaN	NaN	NaN	2.6424E-06	1	36971	77.325	75.701	1	57252			4158	1704	3529	3608	4158	4158		
EETFALSSTK	10	Unmodified	_EETFALSSTK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.777136	1111.53972	0.78788	0.00043867	0.79792	0.00044426	1.5858	0.00088293	556.776296664455	6.5072	0.15072	6.5072	6.4008	6.5515	0	642	31	0.894250814548268	0.020312920651839	0.894250814548268	362.62258614339	0	8.23697747775185						159	18	2	NaN	NaN	NaN	0.056168	1	7026	30.918	19.269	1	66449			4159	3173	3530	3609	4159	4159		
EETFTLSTIK	10	Unmodified	_EETFTLSTIK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.808436	1167.60232	0.84763	0.0004957	0.41117	0.00024046	1.2588	0.00073616	584.807282754507	10.347	0.19503	10.347	10.259	10.454	0	612	40	0.914549654013882	0.0263647247275708	0.914549654013882	370.63568583363	0	10.6847209315873						297	23	3	NaN	NaN	NaN	0.0033936	1	8548	67.507	42.657	1	85381			4160	3452	3531	3610	4160	4160		
EETGQVLER	9	Unmodified	_EETGQVLER_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.767103	1059.51965	2.3506	0.0012476	-2.6506	-0.0014069	-0.30007	-0.00015927	530.765875640161	3.8292	0.27484	3.8292	3.6696	3.9445	0	621	94	0.908462957275599	0.0629919621419014	0.908462957275599	368.60712135425	0	25.5588691290339						555	32	4	NaN	NaN	NaN	0.0075663	1	5707	33.426	18.891	1	232830			4161	1061	3532	3611	4161	4161		
EETNEIQVVNEEPQR	15	Unmodified	_EETNEIQVVNEEPQR_			0	0	0	Q8NBJ4	Q8NBJ4	Q8NBJ4	GOLM1	Golgi membrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.431769	1812.84899	2.3333	0.0021173	-1.4897	-0.0013518	0.84367	0.00076557	907.430431746539	7.0392	0.15084	7.0392	6.986	7.1368	0	348	58	1.09197348738011	0.0380778290507997	1.09197348738011	440.695537651887	0	15.3673413687172						494	18	4	NaN	NaN	NaN	4.3315E-24	1	27548	191.95	174.53	1	121050			4162	2288	3533	3612	4162	4162		
EETQPPVALK	10	Unmodified	_EETQPPVALK_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.303321	1110.59209	1.3143	0.00073117	0.67418	0.00037505	1.9885	0.0011062	556.304278304327	5.7623	0.25708	5.7623	5.6471	5.9041	0	651	82	0.888155670855968	0.0548867941438665	0.888155670855968	360.154743157532	0	22.2570658458706						1046	30	3	NaN	NaN	NaN	0.00089752	1	7005	93.467	64.158	1	395500			4163	2296	3534	3613	4163	4163		
EETVLATVQALQTASHLSQQADLR	24	Unmodified	_EETVLATVQALQTASHLSQQADLR_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	870.455829	2608.34566	0.97193	0.00084602	1.6981	0.0014781	2.67	0.0023241	870.791901944704	16.918	0.13301	16.918	16.874	17.007	0	285	58	1.13399579921816	0.0379887953176345	1.13399579921816	684.888876040657	0	22.9437387203478						650	16	5	NaN	NaN	NaN	9.0875E-10	1	37269	84.105	70.101	1	203510			4164	519	3535	3614	4164	4164		
EETVNDPEEAGHR	13	Unmodified	_EETVNDPEEAGHR_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.886698	1481.63826	0.18492	9.1517E-05	1.1134	0.00055099	1.2983	0.00064251	494.887334594433	2.6409	0.1862	2.6409	2.5878	2.774	0	819	22	0.773912161060781	0.0143351345420983	0.773912161060781	469.291167707851	0	8.69265579092269						345	22	4	NaN	NaN	NaN	1.5678E-05	1	17948	129.28	123.02	1	77286			4165	92	3536	3615	4165	4165		
EETVVENATPDYAAGLVSTQK	21	Unmodified	_EETVVENATPDYAAGLVSTQK_			0	0	0	Q9H3P2	Q9H3P2	Q9H3P2	NELFA	Negative elongation factor A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1111.54479	2221.07502	0.90873	0.0010101	-1.3407	-0.0014902	-0.43194	-0.00048012	1112.04423098045	11.837	0.062078	11.837	11.802	11.864	0	126	31	1.23951419873743	0.0198368122798747	1.23951419873743	499.540936506471	0	7.99450284126254						117	8	3	NaN	NaN	NaN	6.8917E-06	1	34898	70.638	61.125	1	21557			4166	2881	3537	3616	4166	4166		
EEVMAATQAEGPK	13	Unmodified	_EEVMAATQAEGPK_			0	0	0	Q96BP3	Q96BP3	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.824292	1359.63403	2.0873	0.0014211	2.2985	0.0015649	4.3859	0.002986	681.328482181657	4.8578	0.16853	4.8578	4.778	4.9465	0	516	40	0.979317271586824	0.026255437790293	0.979317271586824	396.228624806106	0	10.6228658588585						265	20	3	NaN	NaN	NaN	0.0025813	1	14176	69.276	49.042	1	59675			4167	2485	3538	3617	4167	4167		
EEVVLLTHGDSVDK	14	Unmodified	_EEVVLLTHGDSVDK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.266627	1539.77805	0.36542	0.00018793	0.77407	0.00039808	1.1395	0.000586	514.26693213853	7.4294	0.18617	7.4294	7.3851	7.5713	-8.8818E-16	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	516.178385059934	0	12.3491627053						296	22	4	NaN	NaN	NaN	0.0068334	1	19720	38.584	34.057	1	90027			4168	1155	3539	3618	4168	4168		
EEVVLLTHGDSVDK	14	Unmodified	_EEVVLLTHGDSVDK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.896303	1539.77805	2.5433	0.0019606	-0.041027	-3.1627E-05	2.5023	0.001929	770.895958502465	7.4294	0.25713	7.4294	7.3408	7.5979	0	399	49	1.0578662689527	0.0321429928417942	1.0578662689527	427.50495978463	0	12.9896275791013						648	30	5	NaN	NaN	NaN	3.8481E-17	1	19723	204.34	186.87	1	272260			4169	1155	3539	3618	4169	4169		
EEVVLWMNTVGPYHNR	16	Unmodified	_EEVVLWMNTVGPYHNR_			0	0	0	Q9HD45	Q9HD45	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.652599	1942.93597	0.60223	0.00039064	0.64772	0.00042014	1.25	0.00081078	648.652764047584	13.345	0.12419	13.345	13.309	13.434	0	576	25	0.938871150116794	0.016203101643964	0.938871150116794	568.069303874348	0	9.80377836761397						93	15	2	NaN	NaN	NaN	0.030838	1	30581	54.199	50.216	1	25071			4170	2971	3540	3619	4170	4170		
EEYAVLISEAQAIK	14	Unmodified	_EEYAVLISEAQAIK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.416871	1562.81919	2.1015	0.0016442	1.0983	0.00085936	3.1998	0.0025036	782.417379063243	14.365	0.15072	14.365	14.302	14.453	0	327	58	1.10599442759226	0.0380201832976437	1.10599442759226	446.895784499917	0	15.3626991400133						447	18	4	NaN	NaN	NaN	8.5309E-06	1	20447	112.93	87.069	1	140860			4171	1737	3541	3620	4171	4171		
EEYGFLPVPLR	11	Unmodified	_EEYGFLPVPLR_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.353345	1318.69214	0.32925	0.00021742	-1.2279	-0.00081087	-0.89868	-0.00059344	660.35313546465	15.89	0.23941	15.89	15.783	16.023	1.7764E-15	531	70	0.969216233931596	0.0464776593881555	0.969216233931596	392.264299204914	0	18.8105872046983						507	28	2	NaN	NaN	NaN	1.2826E-07	1	12937	118.06	107.36	1	333110			4172	2289	3542	3621	4172	4172		
EEYNGVIEEFLATGEK	16	Unmodified	_EEYNGVIEEFLATGEK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.435989	1826.85742	1.2078	0.0011045	-7.6565	-0.0070013	-6.4486	-0.0058968	914.930169691922	17.238	0.22168	17.238	17.131	17.353	0	306	118	1.12000185836644	0.0779020426170371	1.12000185836644	451.980853425602	0	31.4376547169317						1342	26	6	NaN	NaN	NaN	1.4349E-08	1	27890	106.97	103.47	1	449870			4173	2892	3543	3622	4173	4173		
EEYQLVQVEQK	11	Unmodified	_EEYQLVQVEQK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.853906	1391.69326	2.0432	0.0014238	1.0605	0.00073899	3.1036	0.0021628	696.854848023636	7.9527	0.26615	7.9527	7.8995	8.1656	-8.8818E-16	468	61	1.01159370163332	0.0403176730241901	1.01159370163332	409.192665490739	0	16.3086188303813						1001	31	5	NaN	NaN	NaN	4.9822E-18	1	15198	187.33	164.43	1	401900			4174	3011	3544	3623	4174	4174		
EEYQQTWYHEGPNSLK	16	Unmodified	_EEYQQTWYHEGPNSLK_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.306033	2007.89627	0.57286	0.00038399	1.5718	0.0010536	2.1446	0.0014376	670.641634411576	8.077	0.088805	8.077	8.0325	8.1213	0	651	34	0.888155670855968	0.022351963978809	0.888155670855968	537.260420633749	0	13.5210819041123						258	11	4	NaN	NaN	NaN	0.0028193	1	31767	42.446	39.899	1	59216			4175	188	3545	3624	4175	4175		
EEYQSLIR	8	Unmodified	_EEYQSLIR_			0	0	0	Q9Y3C8	Q9Y3C8	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.266739	1036.51892	1.3227	0.00068685	-1.5396	-0.00079949	-0.21692	-0.00011264	519.26586258232	7.3496	0.22167	7.3496	7.2521	7.4738	0	657	46	0.884090832094921	0.0304884139621503	0.884090832094921	358.820290824244	0	12.3741375518462						491	23	4	NaN	NaN	NaN	0.0025506	1	5146	89.123	61.418	1	202140			4176	3385	3546	3625	4176	4176		
EFADSLGIPFLETSAK	16	Unmodified	_EFADSLGIPFLETSAK_			0	0	0	P62820;Q9H0U4;Q92928	P62820;Q9H0U4	P62820	RAB1A;RAB1B;RAB1C	Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.94071	1723.86687	2.043	0.001763	0.3781	0.00032628	2.4211	0.0020892	862.941675926071	18.417	0.088658	18.417	18.355	18.444	0	333	19	1.10198982404297	0.01202043207265	1.10198982404297	444.91213678061	0	4.85307214439428						119	11	3	NaN	NaN	NaN	5.421E-09	1	25169	95.656	89.628	1	31129			4177	1398;2850	3547	3626	4177	4177		
EFADSLGIPFLETSAK	16	Unmodified	_EFADSLGIPFLETSAK_			0	0	0	P62820;Q9H0U4;Q92928	P62820;Q9H0U4	P62820	RAB1A;RAB1B;RAB1C	Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.94071	1723.86687	2.3527	0.0020302	0.51723	0.00044634	2.8699	0.0024766	862.941042589521	18.523	0.28381	18.523	18.39	18.674	0	327	100	1.10599442759226	0.0660169326300004	1.10599442759226	446.528935898418	0	26.6533627504128						1591	33	6	NaN	NaN	NaN	5.4265E-13	1	25170	162.23	145.94	1	1099200			4178	1398;2850	3547	3626	4178	4178		
EFAFIDMPDAAHGISSQDGPLSVLK	25	Unmodified	_EFAFIDMPDAAHGISSQDGPLSVLK_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	882.435378	2644.2843	0.89274	0.00078778	-2.0272	-0.0017889	-1.1345	-0.0010011	882.76821146071	18.47	0.11535	18.47	18.399	18.515	0	522	34	0.975277694896658	0.0222130658502994	0.975277694896658	588.986956177225	0	13.4148521092942						247	14	4	NaN	NaN	NaN	0.00051035	1	37412	39.483	39.483	1	36675			4179	259	3548	3627	4179	4179		
EFALQSTSEPVAGLGPALAWK	21	Unmodified	_EFALQSTSEPVAGLGPALAWK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.57041	2171.12627	-0.64073	-0.0006962	1.6344	0.0017759	0.99364	0.0010797	1087.0746612032	17.264	0.097548	17.264	17.22	17.317	0	60	67	1.28308947459206	0.043545447280851	1.28308947459206	517.176297946064	0	17.5519117435487						299	12	3	NaN	NaN	NaN	6.3745E-16	1	34328	131.48	128.93	1	51401			4180	408	3549	3628	4180	4180		
EFAPSDEELDSYR	13	Unmodified	_EFAPSDEELDSYR_			0	0	0	O75391	O75391	O75391	SPAG7	Sperm-associated antigen 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.338817	1556.66308	1.6464	0.0012831	1.6955	0.0013213	3.3419	0.0026045	779.340057122794	9.5494	0.10641	9.5494	9.5051	9.6115	0	417	58	1.04580932352505	0.0381829759272949	1.04580932352505	422.591647468631	0	15.4290140080053						381	13	3	NaN	NaN	NaN	3.0282E-05	1	20247	108.4	82.544	1	102770			4181	330	3550	3629	4181	4181		
EFASHLQQLQDALNELTEEHSK	22	Unmodified	_EFASHLQQLQDALNELTEEHSK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	642.564766	2566.22996	-1.2971	-0.00083348	-0.45021	-0.00028929	-1.7473	-0.0011228	642.8152564086	16.821	0.10639	16.821	16.768	16.874	0	672	22	0.873923798053065	0.0142397763386857	0.873923798053065	703.813888270264	0	11.4679934055539						219	13	5	NaN	NaN	NaN	0.02088	1	37092	13.739	13.687	1	52056			4182	1782	3551	3630	4182	4182		
EFASHLQQLQDALNELTEEHSK	22	Unmodified	_EFASHLQQLQDALNELTEEHSK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	642.564766	2566.22996	-0.52122	-0.00033492	0.22046	0.00014166	-0.30076	-0.00019325	642.815807928254	16.821	0.097531	16.821	16.777	16.874	0	594	22	0.926715457081489	0.0141865549073745	0.926715457081489	746.329609359087	0	11.4251315236679						201	12	4	NaN	NaN	NaN	0.057322	1	37093	26.21	25.61	1	46696			4183	1782	3551	3630	4183	4183		
EFASHLQQLQDALNELTEEHSK	22	Unmodified	_EFASHLQQLQDALNELTEEHSK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.417263	2566.22996	1.1292	0.00096708	0.82964	0.00071052	1.9589	0.0016776	856.752434145019	16.812	0.1064	16.812	16.759	16.865	0	351	34	1.08996939197032	0.0220450526465417	1.08996939197032	658.355923232563	0	13.3155032560948						328	13	4	NaN	NaN	NaN	0.00036782	1	37094	70.831	67.435	1	85211			4184	1782	3551	3630	4184	4184		
EFCENLSADCR	11	Unmodified	_EFCENLSADCR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.782101	1399.54965	1.8144	0.0012715	0.1014	7.1061E-05	1.9158	0.0013426	700.782669847236	6.4451	0.22168	6.4451	6.3919	6.6136	0	507	34	0.985374541851584	0.0222007820488888	0.985374541851584	398.56492867895	0	8.97978660713659						475	26	5	NaN	NaN	NaN	4.4302E-05	1	15428	129.28	103.42	1	249460			4185	905	3552	3631	4185	4185		
EFCQQEVEPMCK	12	Unmodified	_EFCQQEVEPMCK_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.828194	1583.64183	2.2889	0.0018147	-0.25259	-0.00020026	2.0363	0.0016144	792.828578284077	6.8441	0.17733	6.8441	6.7821	6.9594	0	441	61	1.02971785871157	0.0402286781302903	1.02971785871157	416.026900521355	0	16.2532019164522						511	21	5	NaN	NaN	NaN	2.8986E-23	1	21071	167.76	162.93	1	153240			4186	2529	3553	3632	4186	4186		
EFDAILINPK	10	Unmodified	_EFDAILINPK_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.321514	1158.62847	0.6981	0.00040512	-4.7808	-0.0027744	-4.0827	-0.0023693	580.318617156582	12.662	0.21283	12.662	12.564	12.777	0	576	55	0.938871150116794	0.0364620403593936	0.938871150116794	380.526784191266	0	14.7781545543137						630	25	4	NaN	NaN	NaN	0.00060565	1	8328	79.809	72.163	1	163780			4187	3353	3554	3633	4187	4187		
EFDEDSEDRLVNEK	14	Unmodified	_EFDEDSEDRLVNEK_			0	0	1	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.88412	1723.75369	3.2227	0.0027809	-1.6721	-0.0014428	1.5507	0.001338	862.882887358206	6.5161	0.133	6.5161	6.4717	6.6047	0	339	58	1.09798411722691	0.0380778290507997	1.09798411722691	443.295131169088	0	15.3733701233676						431	16	4	NaN	NaN	NaN	0.0029064	1	25142	72.846	64.472	1	138750			4188	3215	3555	3634	4188	4188		
EFDEEAR	7	Unmodified	_EFDEEAR_			0	0	0		REV__Q9UQQ1	REV__Q9UQQ1			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.193239	894.371926	0.80402	0.00036036	1.6528	0.00074078	2.4568	0.0011011	448.193959886116	3.2971	0.36364	3.2971	3.2528	3.6164	0	750	43	0.820941264895493	0.0285846129737781	0.820941264895493	333.883333526608	0	11.6255891564519						659	42	4	NaN	NaN	NaN	0.010003	1	2241	69.093	0	1	305860	+		4189	3518	3556	3635	4189	4189		
EFDELNPSAQR	11	Unmodified	_EFDELNPSAQR_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.307123	1304.59969	1.7653	0.0011533	0.27693	0.00018092	2.0422	0.0013342	653.307095292995	7.4028	0.29261	7.4028	7.261	7.5536	0	552	46	0.955063035883597	0.0303492849683255	0.955063035883597	386.579458601947	0	12.284435384055						756	34	4	NaN	NaN	NaN	4.1425E-05	1	12491	99.855	95.872	1	277810			4190	730	3557	3636	4190	4190		
EFDPTITDASLSLPSR	16	Unmodified	_EFDPTITDASLSLPSR_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.938699	1747.86284	2.2311	0.0019521	2.0779	0.001818	4.309	0.0037701	874.93991562756	14.169	0.2926	14.169	14.09	14.382	0	306	55	1.12000185836644	0.0360067249718126	1.12000185836644	452.134701449831	0	14.535591815054						705	34	4	NaN	NaN	NaN	8.6803E-19	1	25838	222.48	214.48	1	277530			4191	1554	3558	3637	4191	4191		
EFEFSQLPLK	10	Unmodified	_EFEFSQLPLK_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.326796	1236.63904	1.1491	0.00071168	-2.8295	-0.0017524	-1.6803	-0.0010407	619.325196416572	14.471	0.12415	14.471	14.4	14.524	0	585	40	0.932794566565362	0.0263355149208984	0.932794566565362	377.783241739061	0	10.6659242627431						363	15	3	NaN	NaN	NaN	0.00051154	1	10525	103.8	62.779	1	169370			4192	3439	3559	3638	4192	4192		
EFEPLLNWMK	10	Unmodified	_EFEPLLNWMK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.828649	1305.64274	1.1821	0.00077288	0.093078	6.0857E-05	1.2752	0.00083374	653.828663021615	17.787	0.32805	17.787	17.681	18.009	0	549	73	0.957085760909907	0.0485286390232953	0.957085760909907	387.394951782284	0	19.6427013568943						1415	38	4	NaN	NaN	NaN	3.8834E-05	1	12521	98.009	81.551	1	1693900			4193	700	3560	3639	4193	4193		
EFEPLLNWMK	10	Oxidation (M)	_EFEPLLNWM(Oxidation (M))K_	EFEPLLNWM(1)K	EFEPLLNWM(96)K	0	1	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.826106	1321.63766	0.23319	0.00015433	0.62271	0.00041213	0.8559	0.00056646	661.826535451477	14.87	0.18619	14.87	14.808	14.994	0	522	67	0.975277694896658	0.0444661168804549	0.975277694896658	394.708383447904	0	17.9960530256458						866	22	4	NaN	NaN	NaN	0.00039168	1	13026	96.311	48.962	1	233140			4194	700	3560	3640	4194	4194	230	
EFESVLVDAFSHVAR	15	Unmodified	_EFESVLVDAFSHVAR_			0	0	0	Q9NQG5	Q9NQG5	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.430844	1704.84713	0.71669	0.00061164	1.7321	0.0014782	2.4488	0.0020898	853.432325105159	17.335	0.12413	17.335	17.282	17.406	0	186	31	1.1997861197946	0.0198913087124573	1.1997861197946	484.439047548751	0	8.03153702829184						279	15	4	NaN	NaN	NaN	1.6624E-06	1	24632	110.52	88.518	1	80141			4195	3000	3561	3641	4195	4195		
EFFCPEHSECICHICLVEHK	20	Unmodified	_EFFCPEHSECICHICLVEHK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	658.53664	2630.11745	-0.32529	-0.00021422	0.91432	0.00060211	0.58902	0.00038789	658.788260900896	10.33	0.044327	10.33	10.321	10.365	0	672	13	0.873923798053065	0.00813532067183087	0.873923798053065	703.72185659617	0	6.5509178030627						54	6	3	NaN	NaN	NaN	0.07033	1	37359	3.441	3.3828	1	9238			4196	1745	3562	3642	4196	4196		
EFFEVANDVIPNLLK	15	Unmodified	_EFFEVANDVIPNLLK_			0	0	0	O00255	O00255	O00255	MEN1	Menin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.466895	1746.91924	1.3034	0.0011398	-1.353	-0.0011832	-0.049655	-4.3422E-05	874.465392402716	19.685	0.062044	19.685	19.649	19.712	0	297	19	1.12600091227925	0.0119939809854079	1.12600091227925	454.558410106126	0	4.84188322417458						69	8	3	NaN	NaN	NaN	0.0030665	1	25812	38.1	34.028	1	9559.1			4197	67	3563	3643	4197	4197		
EFFSQYGDVMDVFIPK	16	Unmodified	_EFFSQYGDVMDVFIPK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.45567	1920.89679	1.7053	0.0016395	-0.57391	-0.00055179	1.1313	0.0010877	961.95680884675	19.827	0.053225	19.827	19.8	19.853	0	276	31	1.13998907770044	0.0199707283140815	1.13998907770044	459.877004720163	0	8.05628658976798						147	7	4	NaN	NaN	NaN	2.6484E-12	1	30080	100.07	98.483	1	26767			4198	1634	3564	3644	4198	4198		
EFGATECINPQDFSK	15	Unmodified	_EFGATECINPQDFSK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.888152	1741.76175	2.6122	0.0022775	-1.0463	-0.00091226	1.5659	0.0013653	871.887305351344	11.199	0.26602	11.199	11.075	11.341	0	300	61	1.12400150285141	0.040007475791868	1.12400150285141	453.761840355934	0	16.1511046001808						1467	31	5	NaN	NaN	NaN	1.1059E-11	1	25647	154.94	146.94	1	691360			4199	658	3565	3645	4199	4199		
EFGSADSDLWMDYMK	15	Unmodified	_EFGSADSDLWMDYMK_			0	0	0	Q9NYH9	Q9NYH9	Q9NYH9	UTP6	U3 small nucleolar RNA-associated protein 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.871113	1793.72767	1.4228	0.0012775	-0.20787	-0.00018664	1.2149	0.0010909	897.871613688795	16.484	0.0532	16.484	16.466	16.519	0	339	22	1.09798411722691	0.0140209402121467	1.09798411722691	443.157146805396	0	5.65898883458971						115	7	3	NaN	NaN	NaN	0.00012237	1	27056	97.175	86.924	1	23124			4200	3114	3566	3646	4200	4200		
EFGTNWPVYMTK	12	Unmodified	_EFGTNWPVYMTK_			0	0	0	P32320	P32320	P32320	CDA	Cytidine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.84757	1471.68059	1.3581	0.0010007	1.278	0.0009417	2.6361	0.0019424	737.8527399383	13.797	0.12411	13.797	13.735	13.859	0	450	70	1.02367897599655	0.0463365125221681	1.02367897599655	413.859713303222	0	18.7332320361734						900	15	7	NaN	NaN	NaN	0.005462	1	17635	39.293	27.937	1	230690			4201	937	3567	3647	4201	4201		
EFHAPLIIDENGVHELVK	18	Unmodified	_EFHAPLIIDENGVHELVK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.365223	2059.07384	0.87371	0.00060056	1.2358	0.00084944	2.1095	0.00145	687.365641384117	13.052	0.11526	13.052	12.999	13.114	0	450	49	1.02367897599655	0.0322051603576423	1.02367897599655	619.135182150107	0	19.4781257520615						306	14	4	NaN	NaN	NaN	5.1522E-05	1	32693	89.382	84.288	1	85389			4202	1880	3568	3648	4202	4202		
EFHGNIIK	8	Unmodified	_EFHGNIIK_			0	0	0	Q92804	Q92804	Q92804	TAF15	TATA-binding protein-associated factor 2N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.261259	956.507966	0.75323	0.00036099	-0.025826	-1.2378E-05	0.7274	0.00034861	479.261609378139	4.0864	0.28376	4.0864	4.0243	4.3081	0	744	61	0.82502364452135	0.0407897772033428	0.82502364452135	335.213932144965	0	16.5732239293364						505	33	3	NaN	NaN	NaN	0.0024816	1	3361	70.67	61.907	1	239710			4203	2434	3569	3649	4203	4203		
EFHLNESGDPSSK	13	Unmodified	_EFHLNESGDPSSK_			0	0	0	Q01105;P0DME0	Q01105	Q01105	SET;SETSIP	Protein SET;Protein SETSIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.888039	1445.64229	-0.17379	-8.3921E-05	1.2446	0.00060101	1.0708	0.00051708	482.888750639224	4.7869	0.43445	4.7869	4.7337	5.1681	0	804	49	0.78414869089473	0.0327500630966873	0.78414869089473	475.607867049211	0	19.8638189874038						1039	50	5	NaN	NaN	NaN	0.00068844	1	16839	97.175	77.851	1	616220			4204	1513	3570	3650	4204	4204		
EFHLNESGDPSSK	13	Unmodified	_EFHLNESGDPSSK_			0	0	0	Q01105;P0DME0	Q01105	Q01105	SET;SETSIP	Protein SET;Protein SETSIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.82842	1445.64229	2.6391	0.0019103	0.76896	0.0005566	3.4081	0.0024669	723.829265015276	4.7869	0.42561	4.7869	4.7248	5.1504	0	513	58	0.981336640919867	0.0383627278189489	0.981336640919867	396.807828676187	0	15.5121393548126						1271	49	5	NaN	NaN	NaN	4.1195E-24	1	16842	187.51	168.19	1	1161300			4205	1513	3570	3650	4205	4205		
EFHTTGLAWSK	11	Unmodified	_EFHTTGLAWSK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.81967	1275.62479	1.8642	0.0011909	0.67009	0.00042807	2.5343	0.0016189	638.820607173106	7.8285	0.46136	7.8285	7.6865	8.1479	0	555	43	0.953040030838688	0.0283122781138182	0.953040030838688	385.852410928237	0	11.4626462851451						640	53	3	NaN	NaN	NaN	4.5187E-05	1	11644	99.855	80.532	1	239520			4206	1516	3571	3651	4206	4206		
EFIANHPDYK	10	Unmodified	_EFIANHPDYK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.29857	1232.58259	1.9402	0.0011977	4.1454	0.002559	6.0856	0.0037566	617.802491849996	4.7691	0.13308	4.7691	4.6627	4.7958	0	567	52	0.944945209309785	0.0344292157937285	0.944945209309785	382.718145587755	0	13.9443911591879						160	16	2	NaN	NaN	NaN	4.4525E-06	1	10389	95.311	78.854	1	61075			4207	1108	3572	3652	4207	4207		
EFIEMWR	7	Unmodified	_EFIEMWR_			0	0	0	Q7L0Y3	Q7L0Y3	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.741845	1009.46914	-1.1799	-0.00059672	6.8113	0.0034448	5.6314	0.002848	506.248190398408	13.017	0.133	13.017	12.963	13.096	0	717	40	0.84338031290707	0.0264967721372047	0.84338031290707	342.41752994949	0	10.7578504359229						303	16	4	NaN	NaN	NaN	0.026117	1	4493	54.056	41.229	1	43110			4208	2111	3573	3653	4208	4208		
EFINLQSALESER	13	Unmodified	_EFINLQSALESER_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.388645	1534.76274	1.7271	0.0013271	-0.8446	-0.00064898	0.88252	0.00067812	768.389485962099	14.435	0.16845	14.435	14.329	14.498	0	396	55	1.05987478976334	0.0361608698716229	1.05987478976334	428.329118369709	0	14.6137578336517						411	20	4	NaN	NaN	NaN	1.2432E-05	1	19579	105.94	73.803	1	82804			4209	301	3574	3654	4209	4209		
EFLALASSSLLK	12	Unmodified	_EFLALASSSLLK_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.868828	1277.7231	0.40347	0.00025817	-0.85175	-0.00054501	-0.44828	-0.00028684	639.868421144939	15.837	0.097552	15.837	15.801	15.899	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.666503975362	0	7.35903415985882						119	12	2	NaN	NaN	NaN	0.062409	1	11707	39.039	20.702	1	38378			4210	3340	3575	3655	4210	4210		
EFLDFFWDIAKPEQETR	17	Unmodified	_EFLDFFWDIAKPEQETR_			0	0	1	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.352983	2170.03712	-0.93712	-0.0006788	0.43924	0.00031816	-0.49788	-0.00036064	724.687245070062	19.729	0.03549	19.729	19.712	19.747	0	681	13	0.867820189810857	0.00813870931192495	0.867820189810857	524.689999745666	0	4.9207191039593						36	5	2	NaN	NaN	NaN	0.029309	1	34309	38.14	33.543	1	6969.7			4211	2698	3576	3656	4211	4211		
EFLEDTCVQYVQK	13	Unmodified	_EFLEDTCVQYVQK_			0	0	0	Q9UNN8	Q9UNN8	Q9UNN8	PROCR	Endothelial protein C receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.890163	1657.76577	2.7106	0.0022495	0.085595	7.1034E-05	2.7962	0.0023205	829.890060603922	10.587	0.16846	10.587	10.543	10.711	0	360	37	1.08395544855938	0.0240640669775463	1.08395544855938	437.77018949387	0	9.71860160374155						314	20	3	NaN	NaN	NaN	3.7632E-11	1	23259	171.34	152.83	1	74650			4212	3302	3577	3657	4212	4212		
EFLFSLPDK	9	Unmodified	_EFLFSLPDK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.289682	1094.56481	-0.40957	-0.00022456	0.42612	0.00023364	0.016552	9.0751E-06	548.289908894013	15.216	0.12414	15.216	15.171	15.296	0	669	67	0.875957769340875	0.0447194569553507	0.875957769340875	355.272137369271	0	18.1373778629481						373	15	3	NaN	NaN	NaN	0.0036279	1	6571	72.038	51.38	1	95562			4213	2080	3578	3658	4213	4213		
EFLHAQEEVK	10	Unmodified	_EFLHAQEEVK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.311677	1228.6088	2.4607	0.0015141	-1.1991	-0.00073784	1.2616	0.00077628	615.311043938842	5.0085	0.19506	5.0085	4.9731	5.1681	0	543	37	0.961130371139249	0.0242643069631547	0.961130371139249	389.287366067754	0	9.82779072515382						383	23	3	NaN	NaN	NaN	2.7612E-14	1	10268	155.57	123.62	1	139180			4214	1068	3579	3659	4214	4214		
EFLIALLEK	9	Unmodified	_EFLIALLEK_			0	0	0	O75165	O75165	O75165	DNAJC13	DnaJ homolog subfamily C member 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.323525	1074.6325	-0.36995	-0.00019915	-0.46475	-0.00025019	-0.83471	-0.00044934	538.323323452977	17.672	0.088674	17.672	17.628	17.716	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	358.653430322434	0	6.59692747732913						133	11	3	NaN	NaN	NaN	0.008805	1	6087	52.591	24.886	1	31725			4215	308	3580	3660	4215	4215		
EFLLIFR	7	Unmodified	_EFLLIFR_			0	0	0	Q96C19	Q96C19	Q96C19	EFHD2	EF-hand domain-containing protein D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.278921	936.543289	-1.7453	-0.00081901	-0.19611	-9.2031E-05	-1.9414	-0.00091104	469.278911262429	17.158	0.19507	17.158	17.114	17.309	0	738	37	0.829104889055312	0.0244840671338465	0.829104889055312	336.973900471889	0	9.95108304198828						419	23	3	NaN	NaN	NaN	0.0071455	1	3009	67.889	45.961	1	168090			4216	2488	3581	3661	4216	4216		
EFLLSLDDSVDETEAVK	17	Unmodified	_EFLLSLDDSVDETEAVK_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.467486	1908.92042	1.4465	0.0013821	2.3368	0.0022327	3.7833	0.0036148	955.468980331783	15.996	0.17734	15.996	15.916	16.094	-1.7764E-15	216	64	1.17988115188462	0.0418435313458212	1.17988115188462	475.99106307136	0	16.8806383050899						673	21	5	NaN	NaN	NaN	9.6597E-05	1	29816	88.42	79.614	1	153530			4217	2786	3582	3662	4217	4217		
EFLPEGQDIGAFVAEQK	17	Unmodified	_EFLPEGQDIGAFVAEQK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.647508	1876.92069	0.55331	0.00034673	0.3563	0.00022328	0.90961	0.00057001	626.981970015532	15.163	0.088682	15.163	15.127	15.216	0	597	52	0.924688525662974	0.0344721745325131	0.924688525662974	559.627417759658	0	20.8627807989279						317	11	4	NaN	NaN	NaN	0.00011946	1	29080	83.474	82.736	1	90608			4218	1544	3583	3663	4218	4218		
EFLSEPDLASYSVVMVDEAHER	22	Unmodified	_EFLSEPDLASYSVVMVDEAHER_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.72845	2522.16352	0.92005	0.00077443	3.6116	0.00304	4.5316	0.0038144	842.06520077943	16.315	0.079817	16.315	16.289	16.369	0	300	22	1.12400150285141	0.013995866790095	1.12400150285141	678.975646883132	0	8.45448398724341						144	10	4	NaN	NaN	NaN	4.77E-06	1	36928	73.345	73.345	1	27456			4219	248	3584	3664	4219	4219		
EFNAEVHR	8	Unmodified	_EFNAEVHR_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.243598	1000.47264	1.157	0.00057995	0.95958	0.00048098	2.1166	0.0010609	501.244323423215	3.0577	0.5321	3.0577	2.9868	3.5189	0	723	46	0.839303037468863	0.030585949193784	0.839303037468863	340.803361498476	0	12.4195836718271						579	61	3	NaN	NaN	NaN	4.3044E-05	1	4292	150.88	126.06	1	438810			4220	1086	3585	3665	4220	4220		
EFNEDGALAVLQQFK	15	Unmodified	_EFNEDGALAVLQQFK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.289543	1707.8468	0.31344	0.00017875	-0.72207	-0.00041179	-0.40863	-0.00023304	570.289013519485	17.787	0.15072	17.787	17.734	17.885	0	639	34	0.896281965493857	0.0223426636256	0.896281965493857	542.828975473366	0	13.5317296031365						358	18	5	NaN	NaN	NaN	4.4537E-06	1	24700	139.78	123.12	1	147840			4221	263	3586	3666	4221	4221		
EFNEDGALAVLQQFK	15	Unmodified	_EFNEDGALAVLQQFK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.930677	1707.8468	2.0953	0.0017913	0.32717	0.00027971	2.4225	0.002071	854.93105324611	17.787	0.21278	17.787	17.734	17.947	0	198	130	1.1918274123006	0.085738640363177	1.1918274123006	481.218740330679	0	34.6183013474998						1623	25	5	NaN	NaN	NaN	1.6105E-85	1	24701	333.25	302.91	1	969800			4222	263	3586	3666	4222	4222		
EFNEEGALSVLQQFK	15	Unmodified	_EFNEEGALSVLQQFK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.293065	1737.85737	-0.45219	-0.0002624	0.33168	0.00019247	-0.12051	-6.9932E-05	580.29276808357	17.486	0.088704	17.486	17.45	17.539	0	615	22	0.912521036363781	0.0142003243693484	0.912521036363781	552.587340820935	0	8.59916557466056						201	11	4	NaN	NaN	NaN	0.00010056	1	25540	119.55	115.02	1	51055			4223	196	3587	3667	4223	4223		
EFNEEGALSVLQQFK	15	Unmodified	_EFNEEGALSVLQQFK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.935959	1737.85737	1.9978	0.001738	-1.5842	-0.0013782	0.41362	0.00035983	869.934483853972	17.486	0.31032	17.486	17.433	17.743	0	333	91	1.10198982404297	0.0600360394736923	1.10198982404297	444.883571988755	0	24.2371091877457						1295	36	5	NaN	NaN	NaN	6.5232E-33	1	25541	193.94	183.92	1	465560			4224	196	3587	3667	4224	4224		
EFNEEGALSVLQQFK	15	Unmodified	_EFNEEGALSVLQQFK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.935959	1737.85737	1.2306	0.0010706	1.9429	0.0016902	3.1735	0.0027608	870.439600501453	17.495	0.088639	17.495	17.433	17.521	0	213	85	1.18187287897418	0.0557952303682947	1.18187287897418	477.133093128098	0	22.5250543616212						279	11	2	NaN	NaN	NaN	3.2811E-05	1	25542	99.276	98.224	1	58125			4225	196	3587	3667	4225	4225		
EFNFLDYLK	9	Unmodified	_EFNFLDYLK_			0	0	0	Q9UNS1	Q9UNS1	Q9UNS1	TIMELESS	Protein timeless homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.800414	1187.58628	0.0077148	4.5888E-06	3.3639	0.0020009	3.3716	0.0020054	594.800057548227	18.523	0.070945	18.523	18.497	18.568	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	381.238069541346	0	8.20545409798194						102	9	2	NaN	NaN	NaN	0.0076442	1	9086	77.072	46.479	1	29999			4226	3305	3588	3668	4226	4226		
EFNLNELYQR	10	Unmodified	_EFNLNELYQR_			0	0	0	Q9Y320	Q9Y320	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.327859	1324.64116	0.59961	0.00039774	-0.74237	-0.00049244	-0.14277	-9.4701E-05	663.327465848395	13.185	0.088691	13.185	13.141	13.23	0	537	34	0.965173861991602	0.0222315106769172	0.965173861991602	390.61006370825	0	8.99718915297024						214	11	4	NaN	NaN	NaN	0.0023529	1	13128	86.205	62.63	1	61465			4227	3366	3589	3669	4227	4227		
EFPDVLECTVSHAVEK	16	Unmodified	_EFPDVLECTVSHAVEK_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.632981	1858.87711	1.0936	0.00067875	0.60219	0.00037374	1.6958	0.0010525	620.967354470137	13.921	0.09754	13.921	13.868	13.966	0	555	28	0.953040030838688	0.0182095678399629	0.953040030838688	576.8269622011	0	11.0213310671506						226	12	4	NaN	NaN	NaN	0.0078344	1	28669	50.641	49.76	1	53252			4228	1109	3590	3670	4228	4228		
EFPDVLECTVSHAVEK	16	Unmodified	_EFPDVLECTVSHAVEK_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.445834	1858.87711	2.0846	0.0019396	0.47638	0.00044324	2.5609	0.0023828	930.446395513598	13.912	0.16848	13.912	13.85	14.019	0	171	46	1.20972836110953	0.0298185455651743	1.20972836110953	488.126915294342	0	12.0318206410756						796	20	5	NaN	NaN	NaN	2.0089E-12	1	28670	147.02	123.21	1	364910			4229	1109	3590	3670	4229	4229		
EFQDAGEQVVSSPADVAEK	19	Unmodified	_EFQDAGEQVVSSPADVAEK_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.47109	2004.92763	1.7435	0.0017495	-0.39202	-0.00039338	1.3515	0.0013562	1003.97241758793	9.381	0.19506	9.381	9.31	9.5051	0	228	70	1.17191150690002	0.0458475287495643	1.17191150690002	472.612528748554	0	18.4895500826004						1036	23	5	NaN	NaN	NaN	1.8109E-11	1	31713	101.52	88.178	1	326300			4230	928	3591	3671	4230	4230		
EFQQPSQITESTIHEIPTK	19	Unmodified	_EFQQPSQITESTIHEIPTK_			0	0	0	Q5SW79	Q5SW79	Q5SW79	CEP170	Centrosomal protein of 170 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.374336	2212.10118	1.1864	0.00087604	-0.045168	-3.3351E-05	1.1413	0.00084269	738.708719950252	10.746	0.070979	10.746	10.702	10.773	0	483	28	1.00151498427745	0.01814921540488	1.00151498427745	605.449608801549	0	10.9718132423823						169	9	4	NaN	NaN	NaN	0.022177	1	34812	31.767	23.4	1	36633			4231	1981	3592	3672	4231	4231		
EFQQYLPVVMGPLMK	15	Unmodified	_EFQQYLPVVMGPLMK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.977255	1778.90993	-0.83209	-0.00049424	-0.87093	-0.00051732	-1.703	-0.0010116	594.311248437654	18.488	0.12421	18.488	18.435	18.559	0	666	19	0.877991458330206	0.0121995944247819	0.877991458330206	531.58057285588	0	7.38625339848807						147	15	3	NaN	NaN	NaN	0.0131	1	26651	55.754	52.669	1	25587			4232	74	3593	3673	4232	4232		
EFQQYLPVVMGPLMK	15	Unmodified	_EFQQYLPVVMGPLMK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.462244	1778.90993	1.9069	0.001698	-2.1261	-0.0018932	-0.21921	-0.0001952	890.962150681073	18.47	0.26605	18.47	18.364	18.63	0	279	61	1.13799159301878	0.0399689530119671	1.13799159301878	459.333911765343	0	16.1328920606964						697	31	3	NaN	NaN	NaN	1.3465E-06	1	26652	117.21	112.38	1	234750			4233	74	3593	3673	4233	4233		
EFQQYLPVVMGPLMK	15	Oxidation (M)	_EFQQYLPVVMGPLM(Oxidation (M))K_	EFQQYLPVVM(0.032)GPLM(0.968)K	EFQQYLPVVM(-15)GPLM(15)K	0	1	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.459701	1794.90485	1.0877	0.0009773	-0.112	-0.00010063	0.97575	0.00087667	898.45935963702	16.67	0.18624	16.67	16.581	16.768	0	258	61	1.15196821829984	0.039930485845072	1.15196821829984	464.943319247561	0	16.116254192651						671	22	3	NaN	NaN	NaN	9.6283E-06	1	27102	78.043	66.024	2	133650			4234	74	3593	3674	4234	4234	28	
EFSGHQGQINDMAFSPDGR	19	Unmodified	_EFSGHQGQINDMAFSPDGR_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.30956	2091.90685	0.10034	7.0066E-05	0.735	0.00051326	0.83533	0.00058332	698.644626787079	8.8133	0.10651	8.8133	8.7599	8.8665	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	527.275451628012	0	12.303010121749						350	13	5	NaN	NaN	NaN	4.0902E-07	1	33212	117.77	112.15	1	92223			4235	2329	3594	3675	4235	4235		
EFSITDLVPYSITLR	15	Unmodified	_EFSITDLVPYSITLR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.472177	1752.9298	1.7412	0.0015278	0.64606	0.0005669	2.3872	0.0020947	877.97450735713	19.907	0.079814	19.907	19.889	19.969	0	297	58	1.12600091227925	0.0379992536574683	1.12600091227925	454.546131136527	0	15.3396090071677						344	10	5	NaN	NaN	NaN	6.9301E-12	1	25986	112.7	98.34	1	98535			4236	450	3595	3676	4236	4236		
EFSITDVVPYPISLR	15	Unmodified	_EFSITDVVPYPISLR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.466895	1734.91924	1.4174	0.001231	-0.46218	-0.00040138	0.95523	0.00082958	868.466361799986	19.162	0.2394	19.162	19.029	19.268	0	297	82	1.12600091227925	0.0540287050833896	1.12600091227925	454.583160456333	0	21.8121843813208						1367	28	5	NaN	NaN	NaN	1.1538E-12	1	25476	159.12	132.66	1	776040			4237	955	3596	3677	4237	4237		
EFSPFGTITSAK	12	Unmodified	_EFSPFGTITSAK_			0	0	0	P11940	P11940	P11940	PABPC1	Polyadenylate-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.82716	1283.63977	1.0812	0.00069504	0.84257	0.00054163	1.9238	0.0012367	642.827869885494	12.485	0.17733	12.485	12.431	12.609	0	540	52	0.963152256458504	0.0343577961345568	0.963152256458504	389.920415051938	0	13.9093336896869						540	21	5	NaN	NaN	NaN	3.5161E-05	1	11868	90.142	67.756	1	173620			4238	661	3597	3678	4238	4238		
EFSQSFDAAMK	11	Unmodified	_EFSQSFDAAMK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.781896	1259.54924	1.2316	0.0007769	-0.79733	-0.00050294	0.43431	0.00027396	630.781603982103	8.9819	0.15076	8.9819	8.9375	9.0883	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.3478294657	0	9.02194975641959						368	18	4	NaN	NaN	NaN	4.5721E-05	1	11183	109.88	87.491	1	116770			4239	3434	3598	3679	4239	4239		
EFTEAVEAK	9	Unmodified	_EFTEAVEAK_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.253297	1022.49204	1.2312	0.0006307	0.29847	0.00015289	1.5297	0.00078359	512.254766808047	4.9642	0.23939	4.9642	4.9199	5.1593	0	693	70	0.85967808974117	0.0467943591668966	0.85967808974117	348.974769372158	0	18.9955413462989						475	28	4	NaN	NaN	NaN	0.0027894	1	4791	91.783	81.704	1	133100			4240	960	3599	3680	4240	4240		
EFTLEFSR	8	Unmodified	_EFTLEFSR_			0	0	0	P16615;O14983;Q93084	P16615	P16615	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.756007	1027.49746	-0.16977	-8.7388E-05	0.84113	0.00043297	0.67136	0.00034559	514.756283404361	11.846	0.13304	11.846	11.811	11.944	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	359.686607571422	0	9.07541033964196						275	16	3	NaN	NaN	NaN	0.00043605	1	4918	125.5	112.68	1	95853			4241	730	3600	3681	4241	4241		
EFTMAEIEHFVDPSEK	16	Unmodified	_EFTMAEIEHFVDPSEK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.960986	1907.86113	-0.51246	-0.00032642	-1.3404	-0.00085381	-1.8529	-0.0011802	637.294556020246	16.883	0.25719	16.883	16.759	17.016	0	636	85	0.898312834727904	0.0568525632578257	0.898312834727904	543.600059960021	0	34.4034456606601						1557	30	5	NaN	NaN	NaN	2.3353E-07	1	29770	106.47	100.09	1	536680			4242	1035	3601	3682	4242	4242		
EFTMAEIEHFVDPSEK	16	Unmodified	_EFTMAEIEHFVDPSEK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.937841	1907.86113	1.0622	0.0010144	3.6224	0.0034591	4.6846	0.0044735	955.442489453156	16.901	0.23943	16.901	16.759	16.998	0	207	88	1.18585551256002	0.057783951505963	1.18585551256002	478.403169237395	0	23.3114618422904						1410	28	4	NaN	NaN	NaN	1.5074E-08	1	29773	130.65	119.68	1	502890			4243	1035	3601	3682	4243	4243		
EFTNVYIK	8	Unmodified	_EFTNVYIK_			0	0	0	P11940;Q13310	P11940;Q13310	P11940	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.26875	1012.52295	0.36625	0.00018579	1.1291	0.00057276	1.4953	0.00075854	507.269281165446	8.2544	0.16857	8.2544	8.21	8.3785	0	663	34	0.880024865079826	0.0223674774771112	0.880024865079826	357.280976278764	0	9.08096408070315						239	20	2	NaN	NaN	NaN	0.046909	1	4568	53.679	35.276	1	67073			4244	661;1653	3602	3683	4244	4244		
EFTPYDYSQSDFK	13	Unmodified	_EFTPYDYSQSDFK_			0	0	0	Q01780	Q01780	Q01780	EXOSC10	Exosome component 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.851561	1625.68857	2.3752	0.0019331	1.7366	0.0014134	4.1119	0.0033465	813.852082416725	10.959	0.17734	10.959	10.879	11.057	0	381	40	1.06991323971056	0.0260891796066893	1.06991323971056	432.169707862246	0	10.5381938558296						461	21	4	NaN	NaN	NaN	2.4528E-05	1	22346	85.821	77.347	1	120390			4245	1520	3603	3684	4245	4245		
EFTVNIMDTCER	12	Unmodified	_EFTVNIMDTCER_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.834333	1513.65411	1.3021	0.00098676	0.49309	0.00037368	1.7952	0.0013604	757.834807553393	12.254	0.1685	12.254	12.192	12.361	0	435	34	1.03374239103424	0.0221334029246503	1.03374239103424	417.820256417655	0	8.94592711451105						291	20	4	NaN	NaN	NaN	0.00011035	1	18912	81.335	74.645	1	74349			4246	2520	3604	3685	4246	4246		
EFVGCFIDFPK	11	Unmodified	_EFVGCFIDFPK_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.826106	1357.63766	1.0954	0.00074471	-0.89839	-0.00061075	0.19705	0.00013396	679.825444561316	16.076	0.24828	16.076	15.978	16.227	0	480	70	1.00353128488872	0.0464134218863773	1.00353128488872	406.031558792358	0	18.7790000383524						899	29	4	NaN	NaN	NaN	1.8222E-07	1	14124	117.3	100.84	1	288350			4247	341	3605	3686	4247	4247		
EFVLPFLR	8	Unmodified	_EFVLPFLR_			0	0	0	P57678	P57678	P57678	GEMIN4	Gem-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.797478	1019.5804	-1.1294	-0.00057687	0.1585	8.0963E-05	-0.97085	-0.00049591	510.797551228112	18.089	0.15962	18.089	18.009	18.169	0	702	46	0.853568545818287	0.0305392436056822	0.853568545818287	346.507824481142	0	12.3974658098019						387	19	3	NaN	NaN	NaN	0.0079318	1	4735	76.833	64.006	1	106800			4248	1294	3606	3687	4248	4248		
EFWPQEVWSR	10	Unmodified	_EFWPQEVWSR_			0	0	0	P37268	P37268	P37268	FDFT1	Squalene synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.325119	1362.63569	0.11475	7.8295E-05	1.8779	0.0012813	1.9927	0.0013596	682.326530161014	14.879	0.079786	14.879	14.852	14.932	0	537	37	0.965173861991602	0.0242542357032265	0.965173861991602	390.497590724019	0	9.81296839868713						222	10	3	NaN	NaN	NaN	0.0019529	1	14274	69.915	57.088	1	50562			4249	1000	3607	3688	4249	4249		
EFYILWTK	8	Unmodified	_EFYILWTK_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.294768	1098.57498	-0.16177	-8.902E-05	-2.4006	-0.0013211	-2.5624	-0.0014101	550.2932649998	15.358	0.18633	15.358	15.322	15.508	0	642	43	0.894250814548268	0.0284380921957725	0.894250814548268	362.675008302719	0	11.5334368785846						296	22	2	NaN	NaN	NaN	0.00067072	1	6672	90.308	75.773	1	71061			4250	739	3608	3689	4250	4250		
EGAAEGPLDPSGYNPAK	17	Unmodified	_EGAAEGPLDPSGYNPAK_			0	0	0	P18858	P18858	P18858	LIG1	DNA ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.894291	1671.77403	2.2955	0.0019211	-1.6705	-0.001398	0.62494	0.00052301	836.893346900465	8.547	0.23072	8.547	8.4584	8.6891	0	396	43	1.05987478976334	0.0281134808149035	1.05987478976334	428.015162601318	0	11.353224152984						514	27	3	NaN	NaN	NaN	0.0028498	1	23659	47.57	43.588	1	100960			4251	759	3609	3690	4251	4251		
EGAAHAFAQYNLDQFTPVK	19	Unmodified	_EGAAHAFAQYNLDQFTPVK_			0	0	0	P47755	P47755	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.012961	2106.01705	1.6242	0.0011418	-1.7765	-0.0012489	-0.15233	-0.00010709	703.345902044272	12.884	0.13303	12.884	12.839	12.972	0	624	85	0.906433495720521	0.056781667722799	0.906433495720521	548.141727757524	0	34.3372145860387						682	16	5	NaN	NaN	NaN	3.9049E-07	1	33403	103.23	98.924	1	180570			4252	1099	3610	3691	4252	4252		
EGAAHAFAQYNLDQFTPVK	19	Unmodified	_EGAAHAFAQYNLDQFTPVK_			0	0	0	P47755	P47755	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.0158	2106.01705	3.241	0.0034161	-2.9392	-0.003098	0.30179	0.0003181	1054.51378590475	12.884	0.088701	12.884	12.839	12.928	0	144	52	1.22760721615852	0.0337619154736248	1.22760721615852	494.910258111522	0	13.6111274693203						248	11	2	NaN	NaN	NaN	0.058004	1	33404	30.027	26.387	1	91345			4253	1099	3610	3691	4253	4253		
EGAAHAFAQYNMDQFTPVK	19	Unmodified	_EGAAHAFAQYNMDQFTPVK_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.998435	2123.97347	0.47906	0.00033965	-0.7031	-0.0004985	-0.22404	-0.00015884	709.33248172596	11.678	0.15074	11.678	11.633	11.784	0	624	97	0.906433495720521	0.0648933532391801	0.906433495720521	548.111393434249	0	39.2403705693538						956	18	6	NaN	NaN	NaN	1.3611E-14	1	33666	194.83	190.23	1	326910			4254	1226	3611	3692	4254	4254		
EGAAHAFAQYNMDQFTPVK	19	Unmodified	_EGAAHAFAQYNMDQFTPVK_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1062.99401	2123.97347	0.7758	0.00082468	0.16161	0.00017179	0.93741	0.00099646	1063.49553978936	11.678	0.11529	11.678	11.642	11.758	0	144	55	1.22760721615852	0.0357503636804293	1.22760721615852	494.882837180401	0	14.4119724741968						525	14	5	NaN	NaN	NaN	7.2477E-05	1	33667	65.12	62.879	1	143850			4255	1226	3611	3692	4255	4255		
EGAITFTWVER	11	Unmodified	_EGAITFTWVER_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.832777	1307.651	1.1544	0.00075597	-1.9748	-0.0012931	-0.82031	-0.00053716	654.831741830252	13.895	0.33694	13.895	13.744	14.081	0	546	37	0.959108205975751	0.024267665443817	0.959108205975751	388.207332792078	0	9.82254725414464						512	39	3	NaN	NaN	NaN	0.00067708	1	12587	85.622	63.579	1	97676			4256	1044	3612	3693	4256	4256		
EGALCEENMR	10	Unmodified	_EGALCEENMR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.755355	1207.49616	2.43	0.0014696	-0.2251	-0.00013613	2.2049	0.0013334	604.755806097858	4.4056	0.44342	4.4056	4.3524	4.7958	0	600	76	0.922661313351899	0.0507014214667685	0.922661313351899	373.778796871028	0	20.5396238481625						1739	51	6	NaN	NaN	NaN	2.7154E-10	1	9660	191.67	121.76	1	1721800			4257	679	3613	3694	4257	4257		
EGALCEENMR	10	Oxidation (M)	_EGALCEENM(Oxidation (M))R_	EGALCEENM(1)R	EGALCEENM(110)R	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.752812	1223.49107	2.0842	0.0012771	-0.31867	-0.00019527	1.7655	0.0010818	612.752930451897	2.7385	0.37244	2.7385	2.6941	3.0666	0	639	58	0.896281965493857	0.0385918846730076	0.896281965493857	363.038633594071	0	15.6316266743009						828	43	3	NaN	NaN	NaN	0.0017092	1	10104	111.39	104.24	1	226220			4258	679	3613	3695	4258	4258	208	
EGAQFSSHLINLLNPK	16	Unmodified	_EGAQFSSHLINLLNPK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.984454	1766.93153	-0.11491	-6.7797E-05	-0.07149	-4.2178E-05	-0.1864	-0.00010997	590.318697738561	14.178	0.133	14.178	14.099	14.232	1.7764E-15	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	531.608409309616	0	11.082267786039						282	16	3	NaN	NaN	NaN	0.0060098	1	26322	51.454	44.707	1	57506			4259	3330	3614	3696	4259	4259		
EGAQFSSHLINLLNPK	16	Unmodified	_EGAQFSSHLINLLNPK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.473043	1766.93153	1.8	0.001592	0.17858	0.00015795	1.9786	0.00175	884.473141607233	14.178	0.18619	14.178	14.081	14.267	0	156	46	1.21966378336455	0.0298021848658476	1.21966378336455	492.325517560796	0	12.0298530534751						536	22	4	NaN	NaN	NaN	3.2302E-06	1	26324	70.806	65.418	1	110550			4260	3330	3614	3696	4260	4260		
EGATVYATGTHAQVEDGR	18	Unmodified	_EGATVYATGTHAQVEDGR_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.437386	1860.86022	3.0034	0.0027974	-1.6572	-0.0015436	1.3461	0.0012538	931.435784624341	4.5386	0.09752	4.5386	4.512	4.6095	0	225	52	1.17390432875292	0.0338872942601851	1.17390432875292	473.66814156855	0	13.673458136116						325	12	4	NaN	NaN	NaN	3.7161E-10	1	28705	118.26	110.3	1	81895			4261	938	3615	3697	4261	4261		
EGATVYATGTHAQVEDGR	18	Unmodified	_EGATVYATGTHAQVEDGR_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.294016	1860.86022	1.8274	0.0011354	0.062448	3.8798E-05	1.8899	0.0011742	621.293953625718	4.5386	0.11526	4.5386	4.5031	4.6184	0	651	61	0.888155670855968	0.0406484069793801	0.888155670855968	537.551501798566	0	24.6022323951682						517	14	4	NaN	NaN	NaN	7.1361E-07	1	28706	95.345	86.539	1	178190			4262	938	3615	3697	4262	4262		
EGCEAIVDTGTSLMVGPVDEVR	22	Unmodified	_EGCEAIVDTGTSLMVGPVDEVR_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1167.55123	2333.08791	1.1145	0.0013012	-0.82272	-0.00096057	0.29173	0.00034061	1168.05216892898	15.402	0.15087	15.402	15.349	15.5	0	78	52	1.27121832677567	0.0336510508969117	1.27121832677567	512.165190784528	0	13.5577788171379						598	18	4	NaN	NaN	NaN	2.7746E-11	1	35924	95.677	94.924	1	113530			4263	557	3616	3698	4263	4263		
EGCLAFGTDDGK	12	Unmodified	_EGCLAFGTDDGK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.274435	1268.53432	1.4444	0.00091761	3.9819	0.0025296	5.4263	0.0034472	635.27682131156	6.9417	0.13293	6.9417	6.8974	7.0303	0	561	22	0.948993180460448	0.0141669189625594	0.948993180460448	384.23697098595	0	5.73603071387316						147	16	2	NaN	NaN	NaN	0.069894	1	11455	26.579	18.932	1	60763			4264	2355	3617	3699	4264	4264		
EGDAHPLGALPVGTLINNVESEPGR	25	Unmodified	_EGDAHPLGALPVGTLINNVESEPGR_			0	0	0	Q5T653	Q5T653	Q5T653	MRPL2	39S ribosomal protein L2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.101386	2541.28233	0.55614	0.00047166	-1.6559	-0.0014044	-1.0998	-0.00093273	848.434342486838	15.597	0.097518	15.597	15.571	15.668	1.7764E-15	534	28	0.967195187796614	0.0181919339867516	0.967195187796614	584.229579377089	0	10.9887498151725						132	12	3	NaN	NaN	NaN	9.4999E-10	1	36994	84.071	80.312	1	23414			4265	1992	3618	3700	4265	4265		
EGDAHPLGALPVGTLINNVESEPGR	25	Unmodified	_EGDAHPLGALPVGTLINNVESEPGR_			0	0	0	Q5T653	Q5T653	Q5T653	MRPL2	39S ribosomal protein L2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.101386	2541.28233	0.49354	0.00041857	-0.13315	-0.00011292	0.36039	0.00030565	848.435434893593	15.624	0.10639	15.624	15.571	15.677	0	495	28	0.993446994398923	0.018159253288641	0.993446994398923	600.086851321907	0	10.9690091064505						194	13	3	NaN	NaN	NaN	1.2856E-09	1	36995	60.734	59.308	1	39900			4266	1992	3618	3700	4266	4266		
EGDDYEVIPNSNFYVSR	17	Unmodified	_EGDDYEVIPNSNFYVSR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.4527	2002.89085	1.2953	0.0012985	1.0661	0.0010687	2.3614	0.0023672	1002.95510975322	13.088	0.079809	13.088	13.052	13.132	0	225	37	1.17390432875292	0.0239122235316391	1.17390432875292	473.419506428084	0	9.6434716055378						219	10	3	NaN	NaN	NaN	0.0043456	1	31680	46.358	41.804	1	50473			4267	3042	3619	3701	4267	4267		
EGDETPNSIPADIVFIIK	18	Unmodified	_EGDETPNSIPADIVFIIK_			0	0	0	Q9UDY4	Q9UDY4	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.509488	1957.00442	0.84757	0.0008302	-0.88924	-0.00087102	-0.041668	-4.0814E-05	980.010418749748	18.86	0.097522	18.86	18.816	18.914	0	225	40	1.17390432875292	0.0259066892227233	1.17390432875292	473.495909204855	0	10.4494983684338						385	12	5	NaN	NaN	NaN	0.00011789	1	30843	65.173	63.189	1	101330			4268	3197	3620	3702	4268	4268		
EGDGVYYNELETR	13	Unmodified	_EGDGVYYNELETR_			0	0	0	Q8N7H5	Q8N7H5	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.84681	1543.67907	2.1755	0.0016814	1.6938	0.001309	3.8693	0.0029904	772.848154365074	8.5293	0.23065	8.5293	8.485	8.7156	0	411	34	1.04982941439551	0.0221059271192692	1.04982941439551	424.247545401743	0	8.93324685951944						402	27	4	NaN	NaN	NaN	0.00030864	1	19841	94.791	89.963	1	128880			4269	2269	3621	3703	4269	4269		
EGDLIAAQAR	10	Unmodified	_EGDLIAAQAR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.277638	1042.54072	0.72296	0.00037759	2.1509	0.0011234	2.8739	0.0015009	522.278864193222	5.2391	0.2838	5.2391	5.1859	5.4697	0	699	43	0.85560534332665	0.0285131915088889	0.85560534332665	347.232759113085	0	11.5715899111343						523	33	2	NaN	NaN	NaN	0.0015331	1	5289	79.809	49.248	1	574810			4270	493	3622	3704	4270	4270		
EGDLLFTVAK	10	Unmodified	_EGDLLFTVAK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.800414	1091.58628	-0.10763	-5.8855E-05	-0.13901	-7.6012E-05	-0.24665	-0.00013487	546.800226440745	12.387	0.12414	12.387	12.325	12.449	0	666	58	0.877991458330206	0.0386186640056191	0.877991458330206	356.109045613675	0	15.6635414290602						317	15	2	NaN	NaN	NaN	0.0079372	1	6502	57.032	48.269	1	191330			4271	1655	3623	3705	4271	4271		
EGDNVNYDWIHWDPEHSYEFK	21	Unmodified	_EGDNVNYDWIHWDPEHSYEFK_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	670.789838	2679.13025	-0.22799	-0.00015293	0.85482	0.00057341	0.62684	0.00042048	671.040976333358	14.879	0.079793	14.879	14.834	14.914	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	754.316994274282	0	13.0461956369741						222	10	5	NaN	NaN	NaN	0.065032	1	37540	6.6816	6.5029	1	52091			4272	1543	3624	3706	4272	4272		
EGDPAIYAER	10	Unmodified	_EGDPAIYAER_			0	0	0	Q9UGI8	Q9UGI8	Q9UGI8	TES	Testin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.767103	1119.51965	0.29675	0.00016641	1.4834	0.00083182	1.7801	0.00099822	560.768006675387	5.2835	0.19511	5.2835	5.2213	5.4164	0	687	40	0.863749705078866	0.0264526463218361	0.863749705078866	350.223671984597	0	10.7257263001872						332	23	3	NaN	NaN	NaN	5.1596E-05	1	7244	120.33	113.64	1	90164			4273	3203	3625	3707	4273	4273		
EGDQIVGATIYFDNLQSGEVTQLLNTMGHHTVGLK	35	Unmodified	_EGDQIVGATIYFDNLQSGEVTQLLNTMGHHTVGLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	947.225536	3784.87304	1.5933	0.0015093	0.01442	1.3659E-05	1.6078	0.0015229	947.726694978971	19.747	0.035461	19.747	19.738	19.774	0	306	28	1.12000185836644	0.0180021182425405	1.12000185836644	900.427382923179	0	14.4728333217647						148	5	6	NaN	NaN	NaN	6.3439E-23	1	38734	110.93	108.4	1	30885			4274	1584	3626	3708	4274	4274		
EGDQTSNNIPADIVFVLK	18	Unmodified	_EGDQTSNNIPADIVFVLK_			0	0	0	P25685	P25685	P25685	DNAJB1	DnaJ homolog subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.504737	1958.99492	1.4022	0.0013748	-0.1593	-0.00015619	1.2429	0.0012186	980.504649023329	17.867	0.21276	17.867	17.787	18	0	198	70	1.1918274123006	0.0458034599265069	1.1918274123006	480.721767253798	0	18.4747556357223						1115	25	6	NaN	NaN	NaN	6.7552E-14	1	30891	140.3	136.8	1	381650			4275	839	3627	3709	4275	4275		
EGDTIIVPGVEGPIVTQIR	19	Unmodified	_EGDTIIVPGVEGPIVTQIR_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.051854	1992.08916	1.793	0.0017878	0.16894	0.00016844	1.962	0.0019562	997.553499826618	16.147	0.22169	16.147	16.058	16.28	0	183	73	1.20177511391933	0.0477391676706422	1.20177511391933	484.677502524636	0	19.2532698432668						1121	26	5	NaN	NaN	NaN	4.3069E-05	1	31500	88.42	85.132	1	494950			4276	288	3628	3710	4276	4276		
EGDVLTLLESER	12	Unmodified	_EGDVLTLLESER_			0	0	0	P62857	P62857	P62857	RPS28	40S ribosomal protein S28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.851364	1359.68817	1.4062	0.00095741	1.3757	0.00093662	2.7819	0.001894	680.852207005029	15.358	0.36373	15.358	15.269	15.633	0	492	76	0.995464410099171	0.0504424030257907	0.995464410099171	402.761547553133	0	20.4088263717458						1442	42	5	NaN	NaN	NaN	1.2618E-16	1	14191	159.93	134.08	1	2138600			4277	1406	3629	3711	4277	4277		
EGEAVSAGDALCEIETDK	18	Unmodified	_EGEAVSAGDALCEIETDK_			0	0	0	O00330	O00330	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.422752	1892.83095	1.3698	0.0012978	-0.22292	-0.0002112	1.1469	0.0010866	947.924565576358	12.015	0.088657	12.015	11.961	12.05	0	294	34	1.12800004657306	0.0219874545047771	1.12800004657306	455.088958279137	0	8.87078666015003						239	11	4	NaN	NaN	NaN	2.71E-10	1	29432	91.993	83.24	1	49779			4278	73	3630	3712	4278	4278		
EGEDMIAEEHFGSEK	15	Unmodified	_EGEDMIAEEHFGSEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.910403	1706.70938	0.31816	0.00018133	0.79417	0.00045261	1.1123	0.00063393	569.910562407807	7.5003	0.097558	7.5003	7.456	7.5536	0	675	25	0.871889544407995	0.0162751600009597	0.871889544407995	528.05864309197	0	9.85702714447257						204	12	4	NaN	NaN	NaN	0.018424	1	24667	37.504	36.622	1	62237			4279	1511	3631	3713	4279	4279		
EGEDMIAEEHFGSEK	15	Unmodified	_EGEDMIAEEHFGSEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.361967	1706.70938	2.6911	0.0022992	-1.1756	-0.0010044	1.5155	0.0012948	854.361118818661	7.5003	0.11526	7.5003	7.4649	7.5801	0	339	43	1.09798411722691	0.0280515443878693	1.09798411722691	443.33044316925	0	11.3263055539135						350	14	4	NaN	NaN	NaN	2.2059E-05	1	24668	83.214	79.231	1	99900			4280	1511	3631	3713	4280	4280		
EGEEAGPGDPLLEAVPK	17	Unmodified	_EGEEAGPGDPLLEAVPK_			0	0	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.425424	1706.8363	3.4371	0.0029368	5.5436	0.0047366	8.9807	0.0076733	854.43039005893	12.875	0.36359	12.875	12.706	13.07	0	312	100	1.11600111266355	0.0660623955247506	1.11600111266355	450.604828370546	0	26.6738393531977						2496	42	5	NaN	NaN	NaN	3.531E-07	1	24678	115.35	110.53	1	1421200			4281	1888	3632	3714	4281	4281		
EGEEATAEAEEK	12	Unmodified	_EGEEATAEAEEK_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.778061	1291.54157	1.8998	0.0012287	0.32816	0.00021225	2.228	0.001441	646.77847807182	2.57	0.133	2.57	2.5434	2.6764	0	591	22	0.928742107665821	0.0141865549073745	0.928742107665821	375.965399510682	0	5.74287925507781						140	16	2	NaN	NaN	NaN	0.0002908	1	12113	66.664	50.785	1	27492			4282	1621	3633	3715	4282	4282		
EGEEPTVYSDEEEPK	15	Unmodified	_EGEEPTVYSDEEEPK_			0	0	0	O00264	O00264	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.370512	1736.72647	2.3994	0.002086	-1.2065	-0.0010489	1.1929	0.0010371	869.369177975916	5.7623	0.062076	5.7623	5.7357	5.7978	0	372	19	1.07593298845566	0.0120370084609909	1.07593298845566	434.366421410135	0	4.85947763084096						55	8	2	NaN	NaN	NaN	0.022412	1	25501	23.804	22.654	1	8957.5			4283	68	3634	3716	4283	4283		
EGEEPTVYSDEEEPK	15	Unmodified	_EGEEPTVYSDEEEPK_			0	0	0	O00264	O00264	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.370512	1736.72647	3.1932	0.002776	-1.8805	-0.0016348	1.3127	0.0011412	869.368893431843	5.7534	0.12412	5.7534	5.7091	5.8332	0	327	31	1.10599442759226	0.020020262712183	1.10599442759226	446.502569708762	0	8.08240848617532						308	15	4	NaN	NaN	NaN	2.1592E-06	1	25502	95.656	83.638	1	72565			4284	68	3634	3716	4284	4284		
EGEEQPVLPEETESSK	16	Unmodified	_EGEEQPVLPEETESSK_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.412711	1786.81087	2.4753	0.002214	-1.9637	-0.0017563	0.51165	0.00045762	894.911966720198	6.6491	0.079814	6.6491	6.6225	6.7023	0	360	31	1.08395544855938	0.020047861495702	1.08395544855938	437.508036537333	0	8.09175370760306						199	10	3	NaN	NaN	NaN	0.0028892	1	26882	51.569	46.418	1	33504			4285	402	3635	3717	4285	4285		
EGEFVAQFK	9	Unmodified	_EGEFVAQFK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.763832	1053.51311	0.41883	0.00022104	-1.9905	-0.0010505	-1.5717	-0.00082948	527.761940848874	8.769	0.28413	8.769	8.618	8.9021	0	672	73	0.873923798053065	0.0488526333871047	0.873923798053065	354.618859395416	0	19.8233131639076						734	33	3	NaN	NaN	NaN	0.00097899	1	5555	77.072	63.424	1	442620			4286	3319	3636	3718	4286	4286		
EGEIAQFLCDIK	12	Unmodified	_EGEIAQFLCDIK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.850309	1421.68607	0.76351	0.0005435	0.11568	8.2346E-05	0.87919	0.00062585	711.850284670089	16.271	0.12415	16.271	16.227	16.351	0	459	37	1.01763759082241	0.0241705518393689	1.01763759082241	411.55199686892	0	9.77503087997854						337	15	3	NaN	NaN	NaN	3.5161E-05	1	16143	99.34	93.474	1	197570			4287	57	3637	3719	4287	4287		
EGELTVAQGR	10	Unmodified	_EGELTVAQGR_			0	0	0	Q03252	Q03252	Q03252	LMNB2	Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.275095	1058.53564	0.96607	0.00051228	-1.8894	-0.0010019	-0.9233	-0.0004896	530.274175399675	4.2904	0.21281	4.2904	4.2371	4.4499	0	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	344.684728056248	0	9.09332962991306						261	25	3	NaN	NaN	NaN	0.00037844	1	5679	91.783	35.768	1	75815			4288	1537	3638	3720	4288	4288		
EGETVEPYK	9	Unmodified	_EGETVEPYK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.250754	1050.48696	1.7147	0.00090234	0.056752	2.9866E-05	1.7714	0.00093221	526.251036678716	3.714	0.23938	3.714	3.6076	3.847	0	693	52	0.85967808974117	0.0346015342671149	0.85967808974117	348.851223330273	0	14.0410552533933						509	28	3	NaN	NaN	NaN	0.0070072	1	5475	58.426	36.498	1	246310			4289	1575	3639	3721	4289	4289		
EGFFELIPQDLIK	13	Unmodified	_EGFFELIPQDLIK_			0	0	0	P46934	P46934	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.919049	1547.82355	1.0159	0.00078723	0.13761	0.00010663	1.1535	0.00089386	775.419786334713	19.712	0.044344	19.712	19.685	19.729	0	411	31	1.04982941439551	0.0200949105761223	1.04982941439551	424.237453633878	0	8.12037991783961						114	6	4	NaN	NaN	NaN	0.0057531	1	19982	50.297	44.431	1	21475			4290	1093	3640	3722	4290	4290		
EGFFPDSVNK	10	Unmodified	_EGFFPDSVNK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.272021	1138.52949	1.2941	0.000738	1.0034	0.00057218	2.2975	0.0013102	570.272464531621	9.7889	0.26601	9.7889	9.6824	9.9484	0	633	34	0.900343422309015	0.0223333690758126	0.900343422309015	364.987144154045	0	9.05364819283528						408	31	3	NaN	NaN	NaN	0.015211	1	7750	43.272	36.122	1	107430		+	4291	22	3641	3723	4291	4291		
EGFHFEETLTGFK	13	Unmodified	_EGFHFEETLTGFK_			0	0	0	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.367181	1540.71981	1.4632	0.0011287	3.3437	0.0025793	4.807	0.0037079	771.369349686667	13.212	0.12415	13.212	13.167	13.292	0	423	28	1.04178812298108	0.0180991506122403	1.04178812298108	421.00515294245	0	7.31418942445845						264	15	3	NaN	NaN	NaN	0.0035228	1	19732	69.276	64.125	1	56197			4292	2532	3642	3724	4292	4292		
EGFLDTLVVLHR	12	Unmodified	_EGFLDTLVVLHR_			0	0	0	P42771;P42772	P42771	P42771	CDKN2A;CDKN2B	Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.92951	1397.7667	-2.2508	-0.001051	-0.35877	-0.00016752	-2.6096	-0.0012185	466.929216420088	15.943	0.18621	15.943	15.89	16.076	1.7764E-15	774	34	0.804600385996946	0.0224796529754165	0.804600385996946	488.170573428098	0	13.6389508064633						500	22	5	NaN	NaN	NaN	3.1845E-05	1	15383	130.31	123.62	1	279700			4293	1058	3643	3725	4293	4293		
EGFLDTLVVLHR	12	Unmodified	_EGFLDTLVVLHR_			0	0	0	P42771;P42772	P42771	P42771	CDKN2A;CDKN2B	Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.890626	1397.7667	0.77951	0.00054557	0.80013	0.00056	1.5796	0.0011056	699.890977311617	15.952	0.16846	15.952	15.899	16.067	0	444	43	1.02770517576159	0.0281834048046041	1.02770517576159	415.69203551641	0	11.3997838945658						543	20	5	NaN	NaN	NaN	7.8594E-12	1	15387	195.58	186.06	1	252790			4294	1058	3643	3725	4294	4294		
EGFSIPVSADGFK	13	Unmodified	_EGFSIPVSADGFK_			0	0	0	P49792;A6NKT7;Q7Z3J3;Q99666;O14715	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4;RGPD5;RGPD8	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.337892	1352.66123	1.3464	0.00091199	0.35872	0.00024297	1.7051	0.001155	677.338237416108	13.921	0.18622	13.921	13.832	14.019	0	510	52	0.983355730988811	0.0343292904819641	0.983355730988811	397.883220791755	0	13.8902415819805						351	22	2	NaN	NaN	NaN	0.015326	1	13961	50.09	44.939	1	113160			4295	1151;19	3644	3726	4295	4295		
EGFVEYTEQVVK	12	Unmodified	_EGFVEYTEQVVK_			0	0	0	O00410;O60518	O00410	O00410	IPO5;RANBP6	Importin-5;Ran-binding protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.356282	1426.69801	1.4861	0.0010616	2.6929	0.0019237	4.179	0.0029853	714.357493842336	12.192	0.25717	12.192	12.121	12.378	0	468	61	1.01159370163332	0.0403009640013746	1.01159370163332	409.093875816016	0	16.297924290972						581	30	5	NaN	NaN	NaN	0.029981	1	16280	43.168	2.666	1	290820			4296	74	3645	3727	4296	4296		
EGGAGAVDEDDFIK	14	Unmodified	_EGGAGAVDEDDFIK_			0	0	0	O75122	O75122	O75122	CLASP2	CLIP-associating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.822803	1421.63105	1.6517	0.0011757	2.5578	0.0018207	4.2095	0.0029964	711.824611402862	8.9287	0.15089	8.9287	8.8842	9.0351	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.737498296797	0	8.14698679182356						263	18	3	NaN	NaN	NaN	6.9104E-05	1	16131	88.734	81.987	1	66554			4297	302	3646	3728	4297	4297		
EGGDGEEQDVGDAGR	15	Unmodified	_EGGDGEEQDVGDAGR_			0	0	0	Q8N1G4	Q8N1G4	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.80313	1489.59171	1.6071	0.0011986	-0.49516	-0.00036929	1.112	0.0008293	745.802964205535	2.8804	0.097516	2.8804	2.8538	2.9513	0	555	40	0.953040030838688	0.0262990708755764	0.953040030838688	385.258183027858	0	10.6311717587866						155	12	2	NaN	NaN	NaN	1.4459E-08	1	18204	110.58	98.624	1	30753			4298	2241	3647	3729	4298	4298		
EGGFLLLHTLLR	12	Unmodified	_EGGFLLLHTLLR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.938117	1367.79252	-1.7082	-0.00078053	-0.55107	-0.00025181	-2.2593	-0.0010323	456.938004600566	16.644	0.26601	16.644	16.581	16.847	0	747	37	0.822982596624503	0.0244942818992349	0.822982596624503	499.430528294234	0	14.8644603170197						652	31	5	NaN	NaN	NaN	0.016839	1	14440	49.16	42.009	1	363910			4299	1127	3648	3730	4299	4299		
EGGFLLLHTLLR	12	Unmodified	_EGGFLLLHTLLR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.903537	1367.79252	1.0021	0.00068634	0.80754	0.00055309	1.8096	0.0012394	684.904096130069	16.635	0.24827	16.635	16.59	16.839	0	432	40	1.035754240522	0.0261504383989628	1.035754240522	419.037690010187	0	10.5797484294465						677	29	4	NaN	NaN	NaN	2.4969E-23	1	14442	234.28	211.23	1	365360			4300	1127	3648	3730	4300	4300		
EGGGGISCVLQDGCVFEK	18	Unmodified	_EGGGGISCVLQDGCVFEK_			0	0	0	P36551	P36551	P36551	CPOX	Oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.4324	1910.85025	2.0531	0.0019636	0.61288	0.00058618	2.6659	0.0025498	956.432912140133	13.815	0.070924	13.815	13.779	13.85	0	261	34	1.14997238118939	0.0219572303185152	1.14997238118939	463.921805102111	0	8.85798484470803						198	9	4	NaN	NaN	NaN	0.035131	1	29846	37.886	36.615	1	37303			4301	987	3649	3731	4301	4301		
EGGLGPLNIPLLADVTR	17	Unmodified	_EGGLGPLNIPLLADVTR_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.996471	1733.96758	-0.89524	-0.00051834	0.1702	9.8547E-05	-0.72504	-0.0004198	578.996280106737	19.791	0.079822	19.791	19.747	19.827	0	675	25	0.871889544407995	0.0162774195650359	0.871889544407995	527.991848357215	0	9.85714864658087						119	10	3	NaN	NaN	NaN	7.9645E-05	1	25449	78.157	58.6	1	21389			4302	936	3650	3732	4302	4302		
EGGLGPLNIPLLADVTR	17	Unmodified	_EGGLGPLNIPLLADVTR_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.996471	1733.96758	-1.6885	-0.00097763	1.8367	0.0010635	0.14822	8.5818E-05	578.9976499672	19.791	0.053217	19.791	19.756	19.809	0	732	13	0.833184998970724	0.00816021994909644	0.833184998970724	504.55345477374	0	4.94160021137742						40	7	2	NaN	NaN	NaN	0.00012711	1	25450	85.813	78.674	1	7266.5			4303	936	3650	3732	4303	4303		
EGGLGPLNIPLLADVTR	17	Unmodified	_EGGLGPLNIPLLADVTR_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.991069	1733.96758	2.6336	0.002286	-0.46001	-0.00039929	2.1736	0.0018867	867.991049355729	19.8	0.23941	19.8	19.641	19.88	0	315	103	1.11400032671325	0.0680689784207131	1.11400032671325	449.740303796491	0	27.4805691703612						2150	28	6	NaN	NaN	NaN	7.8781E-26	1	25452	241.15	216.46	1	2653700			4304	936	3650	3732	4304	4304		
EGGPNPEHNSNLANILEVCR	20	Unmodified	_EGGPNPEHNSNLANILEVCR_			0	0	0	Q9BSH4	Q9BSH4	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.686919	2219.03893	-0.21313	-0.00015786	0.75498	0.00055921	0.54185	0.00040134	740.687758122215	11.518	0.079803	11.518	11.483	11.562	0	630	25	0.902373728295776	0.0162390708699242	0.902373728295776	545.504735450137	0	9.81687496109191						186	10	4	NaN	NaN	NaN	5.3354E-08	1	34880	70.552	67.837	1	37007			4305	2724	3651	3733	4305	4305		
EGGQYGLVAACAAGGQGHAMIVEAYPK	27	Unmodified	_EGGQYGLVAACAAGGQGHAMIVEAYPK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.431862	2704.27376	0.91572	0.00082638	1.9454	0.0017556	2.8612	0.002582	902.768041368518	12.032	0.097538	12.032	11.97	12.068	0	219	31	1.17788915118882	0.0199241144356994	1.17788915118882	711.264952098353	0	12.0311187902588						221	12	4	NaN	NaN	NaN	0.00020948	1	37614	42.888	40.573	1	43745			4306	1267	3652	3734	4306	4306		
EGGSIPVTLTFQEATGK	17	Unmodified	_EGGSIPVTLTFQEATGK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.949066	1733.88358	2.5135	0.0021816	1.1394	0.0009889	3.6528	0.0031705	868.451191254639	13.487	0.11528	13.487	13.442	13.558	0	339	40	1.09798411722691	0.0260388926708219	1.09798411722691	443.274460589732	0	10.512334306041						307	14	4	NaN	NaN	NaN	0.00061722	1	25445	75.5	62.918	1	81733			4307	2577	3653	3735	4307	4307		
EGHLSPDIVAEQK	13	Unmodified	_EGHLSPDIVAEQK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.912296	1421.71506	-1.0172	-0.0004831	0.3728	0.00017705	-0.64444	-0.00030605	474.912636901808	5.8243	0.15958	5.8243	5.78	5.9396	0	819	58	0.773912161060781	0.0388879973297738	0.773912161060781	469.47390043429	0	23.5904030264402						579	19	4	NaN	NaN	NaN	2.288E-05	1	16149	121.8	114.65	1	188410			4308	715	3654	3736	4308	4308		
EGHLSPDIVAEQK	13	Unmodified	_EGHLSPDIVAEQK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.864805	1421.71506	2.6286	0.0018712	0.54725	0.00038957	3.1759	0.0022608	711.865663378012	5.8332	0.41681	5.8332	5.7534	6.1702	0	444	67	1.02770517576159	0.0443004570103382	1.02770517576159	415.623436310853	0	17.915943800841						1467	48	5	NaN	NaN	NaN	3.2613E-44	1	16150	249.22	219.47	1	1233100			4309	715	3654	3736	4309	4309		
EGHQVALLSGEMMVEQR	17	Unmodified	_EGHQVALLSGEMMVEQR_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.645115	1912.91352	1.4202	0.00090698	6.5952	0.004212	8.0154	0.005119	639.320986978679	11.101	0.15073	11.101	11.03	11.181	0	534	34	0.967195187796614	0.0222376640579702	0.967195187796614	585.271962805594	0	13.4565198996385						285	18	4	NaN	NaN	NaN	0.0025415	1	29903	59.77	59.032	1	73372			4310	3058	3655	3737	4310	4310		
EGICALGGTSELSSEGTQHSYSEEEK	26	Unmodified	_EGICALGGTSELSSEGTQHSYSEEEK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	929.075014	2784.20321	2.3239	0.002159	0.32356	0.00030061	2.6474	0.0024597	929.409770081802	8.8753	0.15975	8.8753	8.8221	8.9819	0	423	130	1.04178812298108	0.0863904155935895	1.04178812298108	628.988360466528	0	52.1589415981668						1867	19	6	NaN	NaN	NaN	2.05E-33	1	37848	151.41	144.73	1	785260			4311	683	3656	3738	4311	4311		
EGIDPTPYYWYTDQR	15	Unmodified	_EGIDPTPYYWYTDQR_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.428498	1902.84244	2.4386	0.0023226	0.093886	8.9419E-05	2.5325	0.0024121	952.929844526599	13.788	0.14186	13.788	13.726	13.868	0	267	64	1.14597988355104	0.041912601110381	1.14597988355104	462.325179055772	0	16.9088926351882						689	17	5	NaN	NaN	NaN	1.7258E-05	1	29659	61.194	38.238	1	302430			4312	229	3657	3739	4312	4312		
EGIESGDPGTDDGR	14	Unmodified	_EGIESGDPGTDDGR_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.797317	1403.58008	2.3427	0.0016464	-0.59355	-0.00041714	1.7491	0.0012293	702.796963846566	3.6785	0.15959	3.6785	3.6431	3.8026	0	582	43	0.934820374997243	0.0283554323651288	0.934820374997243	378.106126203759	0	11.4689013795224						427	19	4	NaN	NaN	NaN	3.8122E-06	1	15564	115.04	104.95	1	92458			4313	1596	3658	3740	4313	4313		
EGILSDEIYCPPETAVLLGSYAVQAK	26	Unmodified	_EGILSDEIYCPPETAVLLGSYAVQAK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	941.808881	2822.40481	0.80404	0.00075725	2.3	0.0021662	3.1041	0.0029234	942.144861881119	19.33	0.15959	19.33	19.215	19.375	0	216	31	1.17988115188462	0.0199186411818211	1.17988115188462	712.315261832148	0	12.0252383777014						361	19	5	NaN	NaN	NaN	0.00073573	1	37940	70.831	70.317	1	74219			4314	710	3659	3741	4314	4314		
EGINIFLDGYVPTENLR	17	Unmodified	_EGINIFLDGYVPTENLR_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.501997	1948.98944	1.1875	0.0011584	0.021083	2.0566E-05	1.2086	0.0011789	976.003775373729	18.071	0.16848	18.071	18.009	18.178	0	204	52	1.18784641916898	0.0338500722771573	1.18784641916898	479.133341634752	0	13.6538680278877						333	20	3	NaN	NaN	NaN	9.9955E-09	1	30703	94.507	92.266	1	86337			4315	1335	3660	3742	4315	4315		
EGIPALDNFLDK	12	Unmodified	_EGIPALDNFLDK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.345717	1330.67688	0.93433	0.00062259	0.91794	0.00061167	1.8523	0.0012343	666.346229207655	16.289	0.72711	16.289	15.854	16.581	0	516	58	0.979317271586824	0.0383786491892638	0.979317271586824	396.315396555612	0	15.5312787939157						2551	83	6	NaN	NaN	NaN	0.00039642	1	13317	81.335	60.247	1	5121800			4316	679	3661	3743	4316	4316		
EGIPALDNFLDKL	13	Unmodified	_EGIPALDNFLDKL_			0	0	1	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.887749	1443.76095	0.87598	0.00063324	-0.7213	-0.00052142	0.15468	0.00011182	722.887284320228	19.969	0.23943	19.969	19.809	20.049	0	456	49	1.01965166402748	0.0322274067567843	1.01965166402748	412.305776679779	0	13.0314561746972						551	28	3	NaN	NaN	NaN	0.00052975	1	16792	99.174	68.581	1	310110			4317	679	3662	3744	4317	4317		
EGIPPDQQR	9	Unmodified	_EGIPPDQQR_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.261988	1038.50942	1.509	0.00078505	0.070066	3.6453E-05	1.579	0.0008215	520.262193432474	2.5966	0.67392	2.5966	2.4459	3.1198	0	741	82	0.827064408645228	0.0550547420460513	0.827064408645228	335.66690085853	0	22.3441541517124						2479	77	4	NaN	NaN	NaN	0.00055096	1	5192	99.305	65.492	1	2292600			4318	1419	3663	3745	4318	4318		
EGIPPDQQR	9	Unmodified	_EGIPPDQQR_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.261988	1038.50942	1.5224	0.00079205	0.47448	0.00024685	1.9969	0.0010389	520.262297548904	3.6519	0.45231	3.6519	3.4124	3.8647	0	720	82	0.841341816837976	0.0550012205584762	0.841341816837976	341.461433682266	0	22.3224321557627						1272	52	3	NaN	NaN	NaN	0.004796	1	5193	62.88	39.305	1	916810			4319	1419	3663	3745	4319	4319		
EGITTYFSGNCTMEDAK	17	Unmodified	_EGITTYFSGNCTMEDAK_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.408591	1922.80263	1.7621	0.0016958	0.6767	0.00065126	2.4388	0.0023471	962.409329188824	11.58	0.13306	11.58	11.527	11.66	0	258	49	1.15196821829984	0.0319355989061636	1.15196821829984	464.706139214374	0	12.8828804783217						464	16	5	NaN	NaN	NaN	6.6272E-10	1	30111	102.57	94.991	1	110010			4320	3109	3664	3746	4320	4320		
EGKPTIVEEDDPELFK	16	Unmodified	_EGKPTIVEEDDPELFK_			0	0	1	O75937	O75937	O75937	DNAJC8	DnaJ homolog subfamily C member 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.459464	1844.90437	2.3207	0.0021431	-1.0191	-0.00094107	1.3016	0.001202	923.459045766851	10.09	0.09753	10.09	10.055	10.152	0	234	40	1.16792504164217	0.0259209328889813	1.16792504164217	471.28566525362	0	10.4597158764584						258	12	4	NaN	NaN	NaN	0.0021137	1	28354	66.509	63.794	1	55678			4321	371	3665	3747	4321	4321		
EGKPTIVEEDDPELFK	16	Unmodified	_EGKPTIVEEDDPELFK_			0	0	1	O75937	O75937	O75937	DNAJC8	DnaJ homolog subfamily C member 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.975401	1844.90437	1.2286	0.00075678	1.2604	0.00077634	2.4889	0.0015331	616.310610075162	10.09	0.12416	10.09	10.046	10.17	0	609	67	0.916577990479294	0.0446388957093937	0.916577990479294	554.789416570962	0	27.0191813072408						598	15	4	NaN	NaN	NaN	0.00012488	1	28355	106.11	100.08	1	227310			4322	371	3665	3747	4322	4322		
EGLDEVAGIINDAK	14	Unmodified	_EGLDEVAGIINDAK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.369921	1442.72529	1.476	0.0010662	-1.3453	-0.00097178	0.13074	9.4439E-05	722.369496044422	14.524	0.34581	14.524	14.409	14.755	0	453	52	1.02166545906632	0.0342345274153426	1.02166545906632	413.122890672416	0	13.8431487539526						468	40	3	NaN	NaN	NaN	6.687E-06	1	16752	99.276	89.762	1	117140			4323	1713	3666	3748	4323	4323		
EGLDWDLIYVGR	12	Unmodified	_EGLDWDLIYVGR_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.364441	1434.71433	0.89832	0.00064532	-1.935	-0.0013901	-1.0367	-0.00074474	718.362725894243	17.557	0.21281	17.557	17.45	17.663	0	474	46	1.00756305028564	0.0302361592844221	1.00756305028564	407.442016613791	0	12.2270082353737						420	25	4	NaN	NaN	NaN	9.1819E-08	1	16533	117.3	95.296	1	126340			4324	2289	3667	3749	4324	4324		
EGLEFAVIR	9	Unmodified	_EGLEFAVIR_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.287474	1032.5604	0.57788	0.00029893	2.3678	0.0012248	2.9457	0.0015237	517.283645422411	12.768	0.20398	12.768	12.68	12.884	0	696	55	0.857641857947968	0.0366547318720113	0.857641857947968	348.1030874965	0	14.8775683203392						677	24	4	NaN	NaN	NaN	0.029596	1	5072	39.324	0.31423	1	262380			4325	3447	3668	3750	4325	4325		
EGLELLK	7	Unmodified	_EGLELLK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	401.239461	800.46437	-1.9095	-0.00076618	-0.89391	-0.00035867	-2.8034	-0.0011248	401.239160980777	9.5938	0.2128	9.5938	9.5228	9.7356	0	822	40	0.771863999559055	0.0266298140737402	0.771863999559055	314.479369464453	0	10.8497444415721						414	25	3	NaN	NaN	NaN	0.018744	1	992	56.091	13.862	1	176220			4326	544	3669	3751	4326	4326		
EGLELPEDEEEK	12	Unmodified	_EGLELPEDEEEK_			0	0	0	P08238;Q58FF7;P07900;Q58FG0;Q58FF6	P08238;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.822469	1415.63038	2.7008	0.0019144	1.7019	0.0012064	4.4027	0.0031208	708.82390351949	8.3076	0.62104	8.3076	8.21	8.831	0	474	118	1.00756305028564	0.0786576063283122	1.00756305028564	407.494448448433	0	31.811942585571						4215	71	6	NaN	NaN	NaN	2.5615E-23	1	15948	224.13	183.63	1	8692800			4327	579;567;1958	3670	3752	4327	4327		
EGLELPEDEEEKK	13	Unmodified	_EGLELPEDEEEKK_			0	0	1	P08238;Q58FF7;P07900;Q58FG0;Q58FF6	P08238;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.582392	1543.72535	-0.7	-0.00036091	1.3307	0.00068607	0.63066	0.00032516	515.583105941715	6.4717	0.133	6.4717	6.4274	6.5604	0	765	22	0.810730346695089	0.0143012525920645	0.810730346695089	491.434518928641	0	8.66888629037771						205	16	3	NaN	NaN	NaN	0.0035748	1	19846	45.939	42.594	1	43311			4328	579;567;1958	3671	3753	4328	4328		
EGLELPEDEEEKK	13	Unmodified	_EGLELPEDEEEKK_			0	0	1	P08238;Q58FF7;P07900;Q58FG0;Q58FF6	P08238;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AA5P;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.86995	1543.72535	2.5042	0.0019354	-1.5128	-0.0011692	0.99136	0.00076619	772.868977908291	6.4806	0.27486	6.4806	6.3742	6.6491	0	432	52	1.035754240522	0.0342014530242964	1.035754240522	418.559514141772	0	13.8211778438653						844	32	5	NaN	NaN	NaN	9.8538E-07	1	19847	105.94	73.395	1	335070			4329	579;567;1958	3671	3753	4329	4329		
EGLHYTEVCGYDIASPNAGPLFR	23	Unmodified	_EGLHYTEVCGYDIASPNAGPLFR_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.072551	2565.19582	1.3549	0.0011599	-1.4902	-0.0012757	-0.13527	-0.0001158	856.405649431873	14.471	0.079819	14.471	14.435	14.515	0	525	52	0.973257487423603	0.0343387884231721	0.973257487423603	587.861673749674	0	20.7411274999993						334	10	4	NaN	NaN	NaN	5.9333E-13	1	37088	122.66	112.41	1	60980			4330	883	3672	3754	4330	4330		
EGLLAIFK	8	Unmodified	_EGLLAIFK_			0	0	0	P14923;P35222	P14923	P14923	JUP;CTNNB1	Junction plakoglobin;Catenin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.770929	889.527304	-2.0257	-0.00090302	-0.92214	-0.00041106	-2.9479	-0.0013141	445.770620871147	15.5	0.097548	15.5	15.464	15.562	0	783	25	0.798467866007927	0.0163568017170922	0.798467866007927	324.769973600606	0	6.6529891658754						151	12	3	NaN	NaN	NaN	0.058794	1	2159	24.851	14.772	1	42649			4331	706	3673	3755	4331	4331		
EGLLDQQQGDVK	12	Unmodified	_EGLLDQQQGDVK_			0	0	0	Q14146	Q14146	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.335881	1328.65721	1.409	0.00093748	0.20418	0.00013585	1.6132	0.0010733	665.33692946807	6.2323	0.15079	6.2323	6.1879	6.3387	0	501	31	0.98941132619024	0.0201811333938051	0.98941132619024	400.406571625153	0	8.16713758961924						232	18	3	NaN	NaN	NaN	0.010266	1	13245	45.939	35.237	1	66685			4332	1726	3674	3756	4332	4332		
EGLLGLQNLLK	11	Unmodified	_EGLLGLQNLLK_			0	0	0	O75122	O75122	O75122	CLASP2	CLIP-associating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.363713	1196.71287	-0.41962	-0.0002515	-0.48782	-0.00029238	-0.90744	-0.00054388	599.363440348257	17.326	0.11525	17.326	17.282	17.397	0	570	34	0.942920803299286	0.0222684693182358	0.942920803299286	382.024998432845	0	9.02208534018393						278	14	3	NaN	NaN	NaN	0.0066007	1	9369	65.404	30.623	1	90807			4333	302	3675	3757	4333	4333		
EGLLLWCQR	9	Unmodified	_EGLLLWCQR_			0	0	0	O43707;P12814;P35609;Q08043	O43707;P12814	O43707	ACTN4;ACTN1;ACTN2;ACTN3	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2;Alpha-actinin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.805508	1173.59646	0.89512	0.00052615	-2.0361	-0.0011968	-1.141	-0.00067066	587.804645137986	13.788	0.41671	13.788	13.717	14.134	0	624	70	0.906433495720521	0.0467100220368035	0.906433495720521	367.324588904009	0	18.92884555058						1327	48	5	NaN	NaN	NaN	3.6594E-06	1	8697	138.55	84.671	1	1026800			4334	221;671	3676	3758	4334	4334		
EGLMLDSHEELYK	13	Unmodified	_EGLMLDSHEELYK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.371606	1562.72866	2.1724	0.0016996	2.1386	0.0016732	4.311	0.0033728	782.373443968022	9.6558	0.14187	9.6558	9.5938	9.7356	0	369	61	1.07793901817685	0.0401289106363909	1.07793901817685	435.55973866329	0	16.2147742450134						520	17	4	NaN	NaN	NaN	1.2432E-05	1	20431	124.46	120.95	1	127770			4335	1737	3677	3759	4335	4335		
EGLQNMEAR	9	Unmodified	_EGLQNMEAR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.248023	1046.48149	2.2902	0.0012006	0.43426	0.00022766	2.7244	0.0014283	524.248410218534	4.4854	0.30148	4.4854	4.4056	4.7071	0	642	46	0.894250814548268	0.0304714989453929	0.894250814548268	362.898555955411	0	12.3657287029321						637	35	5	NaN	NaN	NaN	0.00039153	1	5387	110.22	81.116	1	660560			4336	934	3678	3760	4336	4336		
EGLVMVEVR	9	Unmodified	_EGLVMVEVR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.281334	1030.54812	0.19016	9.8179E-05	2.7567	0.0014232	2.9469	0.0015214	516.785743838787	10.223	0.17735	10.223	10.152	10.33	0	669	70	0.875957769340875	0.0468138540179923	0.875957769340875	355.546353775558	0	19.0014812184414						438	21	3	NaN	NaN	NaN	0.0075663	1	5016	56.378	37.976	1	127240			4337	2108	3679	3761	4337	4337		
EGLVPVSEDPVAIK	14	Unmodified	_EGLVPVSEDPVAIK_			0	0	0	Q14694	Q14694	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.900857	1451.78716	1.4606	0.0010617	0.7685	0.00055862	2.2291	0.0016204	726.901587169815	12.254	0.11529	12.254	12.21	12.325	0	411	46	1.04982941439551	0.0301569310517751	1.04982941439551	424.48615466016	0	12.1935997629582						379	14	3	NaN	NaN	NaN	0.066685	1	17037	26.465	20.969	1	134340			4338	1769	3680	3762	4338	4338		
EGMAALQSDPWQQELYR	17	Unmodified	_EGMAALQSDPWQQELYR_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.47291	2020.93128	2.1036	0.0021277	0.50522	0.00051101	2.6088	0.0026387	1011.97452270862	14.329	0.18619	14.329	14.232	14.418	0	195	76	1.19381749893585	0.049765867300561	1.19381749893585	481.42063351601	0	20.0686582200929						985	22	5	NaN	NaN	NaN	3.9434E-10	1	32000	120.21	111.05	1	255750			4339	1145	3681	3763	4339	4339		
EGMNIVEAMER	11	Unmodified	_EGMNIVEAMER_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.79448	1277.57441	1.3183	0.00084346	0.61738	0.000395	1.9357	0.0012385	639.795604410207	12.077	0.43452	12.077	11.997	12.431	0	567	73	0.944945209309785	0.0485689617606289	0.944945209309785	382.568849146686	0	19.6635441102296						2492	50	6	NaN	NaN	NaN	5.9106E-23	1	11685	233.14	193.81	1	5492900			4340	1417	3682	3764	4340	4340		
EGMNIVEAMER	11	Oxidation (M)	_EGM(Oxidation (M))NIVEAMER_	EGM(1)NIVEAMER	EGM(160)NIVEAM(-160)ER	0	1	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.791937	1293.56932	1.7187	0.0011134	-0.50608	-0.00032784	1.2126	0.00078553	647.792257715614	8.8576	0.34608	8.8576	8.7245	9.0706	0	558	46	0.951016745717027	0.0303534869943584	0.951016745717027	384.976044328263	0	12.2872340653131						1179	40	6	NaN	NaN	NaN	2.878E-11	1	12170	183.13	148.35	2	907310			4341	1417	3682	3765	4341	4341	506	
EGMQLISEKPETEAVVK	17	Unmodified	_EGMQLISEKPETEAVVK_			0	0	1	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.99592	1886.96593	0.80966	0.00051008	0.062006	3.9064E-05	0.87167	0.00054915	630.330296679905	9.1504	0.1064	9.1504	9.0972	9.2036	0	639	37	0.896281965493857	0.0243721251806781	0.896281965493857	542.414421451813	0	14.7495907408384						330	13	4	NaN	NaN	NaN	2.6446E-05	1	29312	92.747	80.065	1	117490			4342	1511	3683	3766	4342	4342		
EGNDLYHEMIESGVINLK	18	Unmodified	_EGNDLYHEMIESGVINLK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.670095	2059.98846	0.49835	0.0003427	-0.74652	-0.00051336	-0.24818	-0.00017066	688.004032546932	15.837	0.17737	15.837	15.783	15.961	0	561	103	0.948993180460448	0.0689205386877825	0.948993180460448	573.962483933503	0	41.6839703316746						1144	21	6	NaN	NaN	NaN	5.9668E-20	1	32703	199.84	184.89	1	764840			4343	541	3684	3767	4343	4343		
EGNDLYHEMIESGVINLK	18	Unmodified	_EGNDLYHEMIESGVINLK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.0015	2059.98846	0.82572	0.00085131	-0.11616	-0.00011976	0.70956	0.00073155	1031.50299099208	15.837	0.14189	15.837	15.792	15.934	0	66	121	1.27913350869533	0.0792821676222359	1.27913350869533	515.758567636167	0	31.9673098499638						1326	17	5	NaN	NaN	NaN	3.7073E-19	1	32704	159.75	143.65	1	525910			4344	541	3684	3767	4344	4344		
EGNDLYHEMIESGVINLK	18	Oxidation (M)	_EGNDLYHEM(Oxidation (M))IESGVINLK_	EGNDLYHEM(1)IESGVINLK	EGNDLYHEM(95)IESGVINLK	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.001733	2075.98337	0.043327	3.0026E-05	0.57296	0.00039707	0.61629	0.00042709	693.336446763075	11.633	0.12421	11.633	11.545	11.669	0	618	49	0.910492137470517	0.0324556427464261	0.910492137470517	550.648205528048	0	19.6285510902148						273	15	3	NaN	NaN	NaN	2.8789E-05	1	32955	94.507	85.351	1	67148			4345	541	3684	3768	4345	4345	107	
EGNEMEGEELDPLDAYMEEVK	21	Unmodified	_EGNEMEGEELDPLDAYMEEVK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1214.01435	2426.01414	0.0082712	1.0041E-05	1.0715	0.0013008	1.0798	0.0013109	1214.516995445	17.317	0.08868	17.317	17.273	17.362	0	66	61	1.27913350869533	0.0395921875066181	1.27913350869533	515.237237500104	0	15.9478030860927						425	11	4	NaN	NaN	NaN	1.7908E-07	1	36469	81.578	81.344	1	84266			4346	2110	3685	3769	4346	4346		
EGNPAEINVERDEK	14	Unmodified	_EGNPAEINVERDEK_			0	0	1	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.384091	1598.75363	2.8387	0.002272	-3.4713	-0.0027783	-0.63258	-0.0005063	800.3831321811	4.4411	0.097532	4.4411	4.4056	4.5031	0	387	31	1.06589869032374	0.0200782861239661	1.06589869032374	430.609412743341	0	8.11137031616755						145	12	2	NaN	NaN	NaN	0.00016324	1	21534	115.35	93.304	1	45244			4347	2786	3686	3770	4347	4347		
EGNPEEDLTADK	12	Unmodified	_EGNPEEDLTADK_			0	0	0	P40121	P40121	P40121	CAPG	Macrophage-capping protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.293879	1316.5732	1.2912	0.0008513	1.3176	0.00086865	2.6088	0.0017199	659.294678666414	5.2568	0.31925	5.2568	5.1327	5.4519	0	588	34	0.93076847747433	0.0222900711025618	0.93076847747433	376.709876709974	0	9.02145929961853						679	37	4	NaN	NaN	NaN	0.00027057	1	12861	92.707	64.971	1	233520			4348	1014	3687	3771	4348	4348		
EGNQEVPFDVPELWYEDEK	19	Unmodified	_EGNQEVPFDVPELWYEDEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1162.02369	2322.03282	1.2909	0.0015	0.65481	0.00076091	1.9457	0.002261	1162.5259593391	17.823	0.14186	17.823	17.77	17.912	0	111	82	1.24942920585258	0.0535484215609205	1.24942920585258	503.400690856989	0	21.5749017885928						1171	17	5	NaN	NaN	NaN	0.04175	1	35831	33.456	31.608	1	404320			4349	1055	3688	3772	4349	4349		
EGNVPNIIIAGPPGTGK	17	Unmodified	_EGNVPNIIIAGPPGTGK_			0	0	0	P35250	P35250	P35250	RFC2	Replication factor C subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.449037	1632.88352	1.3317	0.0010886	1.177	0.00096212	2.5087	0.0020507	817.450198941329	11.89	0.20396	11.89	11.837	12.041	0	303	88	1.12200181823275	0.0580628107624948	1.12200181823275	453.192959569888	0	23.4524192588633						673	24	4	NaN	NaN	NaN	0.014581	1	22580	31.767	27.521	1	159010			4350	965	3689	3773	4350	4350		
EGPAVVGQFIQDVK	14	Unmodified	_EGPAVVGQFIQDVK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.898648	1485.78274	1.7559	0.0013062	-0.91261	-0.00067889	0.84324	0.00062728	743.898173019051	14.311	0.27487	14.311	14.178	14.453	0	426	46	1.03977710643793	0.0301694200551728	1.03977710643793	420.330815037076	0	12.1960147443809						922	32	4	NaN	NaN	NaN	1.3572E-07	1	18105	133.49	95.738	1	539630			4351	2175	3690	3774	4351	4351		
EGPIDLGACNQDDWISAVRPVIEK	24	Unmodified	_EGPIDLGACNQDDWISAVRPVIEK_			0	0	1	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	894.777915	2681.31192	1.752	0.0015677	0.79385	0.00071032	2.5459	0.002278	895.113194363103	16.218	0.079809	16.218	16.182	16.262	0	354	70	1.08796502040166	0.0461005749641328	1.08796502040166	656.993306152424	0	27.8389181575263						527	10	5	NaN	NaN	NaN	2.6052E-13	1	37553	117.9	95.448	1	111900			4352	3434	3691	3775	4352	4352		
EGPLCDELIR	10	Unmodified	_EGPLCDELIR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.297713	1200.58087	0.73047	0.00043923	2.2523	0.0013543	2.9828	0.0017935	601.299590744457	10.223	0.25712	10.223	10.17	10.427	0	585	43	0.932794566565362	0.028363289192291	0.932794566565362	377.908455936335	0	11.4909833398813						634	30	5	NaN	NaN	NaN	3.857E-05	1	9472	103.8	95.621	1	247310			4353	1796	3692	3776	4353	4353		
EGPTLSVPMVQGECLLK	17	Unmodified	_EGPTLSVPMVQGECLLK_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.476079	1856.93761	1.934	0.0017976	-2.4259	-0.0022548	-0.49188	-0.00045719	929.975444107684	15.517	0.17748	15.517	15.429	15.606	0	237	58	1.16593139812432	0.0378948642393759	1.16593139812432	470.458435473433	0	15.29074401051						444	21	3	NaN	NaN	NaN	0.0025709	1	28633	54.309	51.224	1	105310			4354	2691	3693	3777	4354	4354		
EGPYDVVVLPGGNLGAQNLSESAAVK	26	Unmodified	_EGPYDVVVLPGGNLGAQNLSESAAVK_			0	0	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1292.6663	2583.31805	1.4555	0.0018815	-1.6643	-0.0021514	-0.20875	-0.00026985	1293.16596170814	15.5	0.11542	15.5	15.446	15.562	0	63	52	1.28111162701928	0.0336418368402702	1.28111162701928	515.854942548148	0	13.5462885859754						527	14	5	NaN	NaN	NaN	5.0257E-05	1	37172	58.045	51.658	1	113690			4355	2644	3694	3778	4355	4355		
EGPYDVVVLPGGNLGAQNLSESAAVK	26	Unmodified	_EGPYDVVVLPGGNLGAQNLSESAAVK_			0	0	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	862.113292	2583.31805	2.4081	0.002076	-2.3289	-0.0020078	0.079139	6.8226E-05	862.445018502002	15.508	0.23068	15.508	15.375	15.606	0	477	226	1.0055473068722	0.150660849065888	1.0055473068722	607.342236648748	0	90.9979037502462						2570	27	6	NaN	NaN	NaN	1.5301E-10	1	37173	131.57	110.83	1	718430			4356	2644	3694	3778	4356	4356		
EGPYSISVLYGDEEVPR	17	Unmodified	_EGPYSISVLYGDEEVPR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.462538	1908.91052	2.0145	0.0019247	0.56643	0.0005412	2.5809	0.002466	955.463278553185	14.09	0.23942	14.09	13.992	14.232	0	243	64	1.16194328902838	0.0418953176452246	1.16194328902838	468.754542144539	0	16.9015309320382						1187	28	5	NaN	NaN	NaN	1.1795E-06	1	29812	97.594	85.576	1	339460			4357	792	3695	3779	4357	4357		
EGQEDQGLTK	10	Unmodified	_EGQEDQGLTK_			0	0	0	P26599;O95758	P26599	P26599	PTBP1;PTBP3	Polypyrimidine tract-binding protein 1;Polypyrimidine tract-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.762017	1103.50948	1.07	0.00059144	-0.92047	-0.0005088	0.1495	8.2637E-05	552.761474154717	2.171	0.21282	2.171	2.1444	2.3572	0	699	28	0.85560534332665	0.0183286333597692	0.85560534332665	346.982607516179	0	7.43300289670208						253	25	2	NaN	NaN	NaN	0.0067053	1	6803	44.82	31.173	1	59666			4358	856	3696	3780	4358	4358		
EGQEIASVSDDHTCR	15	Unmodified	_EGQEIASVSDDHTCR_			0	0	0	Q8NFH4	Q8NFH4	Q8NFH4	NUP37	Nucleoporin Nup37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.581169	1702.72168	2.2248	0.001265	0.51039	0.0002902	2.7352	0.0015552	568.581314988051	3.8381	0.079791	3.8381	3.8026	3.8824	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	535.458426141381	0	9.84900772091839						128	10	3	NaN	NaN	NaN	7.3985E-05	1	24570	71.219	61.641	1	34674			4359	2318	3697	3781	4359	4359		
EGQGEGETQEAAAATAAAR	19	Unmodified	_EGQGEGETQEAAAATAAAR_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.41665	1816.81875	2.6627	0.0024215	-1.5272	-0.0013888	1.1356	0.0010327	909.414985768677	5.1947	0.062075	5.1947	5.177	5.2391	0	342	28	1.09598084995137	0.0180294071906015	1.09598084995137	442.305480260138	0	7.27613589835852						105	8	3	NaN	NaN	NaN	0.0018466	1	27644	51.07	47.967	1	18798			4360	1298	3698	3782	4360	4360		
EGQWDCSACLVQNEGSSTK	19	Unmodified	_EGQWDCSACLVQNEGSSTK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.45459	2154.89463	1.7837	0.0019236	-0.30505	-0.00032898	1.4786	0.0015946	1078.95555710453	8.7068	0.062013	8.7068	8.6891	8.7511	0	189	19	1.1977968526266	0.0119364227563987	1.1977968526266	482.820431220939	0	4.81145761056405						80	8	3	NaN	NaN	NaN	2.4138E-10	1	34102	94.119	93.176	1	12046			4361	1151	3699	3783	4361	4361		
EGSASTEVLR	10	Unmodified	_EGSASTEVLR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.767103	1047.51965	2.0752	0.001089	3.3743	0.0017707	5.4495	0.0028597	524.769439557753	3.8824	0.29264	3.8824	3.8292	4.1219	0	690	58	0.86171403876517	0.038677676741416	0.86171403876517	349.690197144054	0	15.6956992648759						329	34	2	NaN	NaN	NaN	0.015211	1	5406	58.916	38.682	1	148730			4362	350	3700	3784	4362	4362		
EGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTR	34	Unmodified	_EGSGIGAIDSNLDWSHNFTNMLGYTDHQFTELTR_			0	0	0	O75390	O75390	O75390	CS	Citrate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	957.440506	3825.73292	1.2736	0.0012194	-0.38006	-0.00036388	0.89355	0.00085552	957.940960211811	19.508	0.053174	19.508	19.481	19.534	0	441	88	1.02971785871157	0.0582793123301095	1.02971785871157	827.810998365727	0	46.8519170721401						574	7	5	NaN	NaN	NaN	8.1195E-05	1	38743	41.584	41.342	1	133830			4363	329	3701	3785	4363	4363		
EGSTHNWQHITDQIGMFCFTGLKPEQVER	29	Unmodified	_EGSTHNWQHITDQIGMFCFTGLKPEQVER_			0	0	1	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	862.156762	3444.59794	1.6632	0.0014339	0.60005	0.00051734	2.2632	0.0019513	862.408127114572	15.154	0.070953	15.154	15.118	15.189	0	405	31	1.05384839605172	0.0200949105761223	1.05384839605172	847.549909509762	0	16.161185711539						217	9	5	NaN	NaN	NaN	4.0976E-06	1	38630	35.068	33.042	1	35109			4364	482	3702	3786	4364	4364		
EGTDSSQGIPQLVSNISACQVIAEAVR	27	Unmodified	_EGTDSSQGIPQLVSNISACQVIAEAVR_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	943.806422	2828.39744	1.2045	0.0011368	-1.2545	-0.001184	-0.049961	-4.7153E-05	944.139468675603	18.993	0.17733	18.993	18.878	19.055	0	447	73	1.02569221487577	0.0483344518917967	1.02569221487577	619.222232384455	0	29.1800666588293						1049	21	6	NaN	NaN	NaN	2.8123E-15	1	37950	131.02	126.58	1	267280			4365	2679	3703	3787	4365	4365		
EGTGTEMPMIGDR	13	Unmodified	_EGTGTEMPMIGDR_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.307952	1392.60135	1.5483	0.0010797	-0.19415	-0.00013538	1.3542	0.00094427	697.308189405397	8.7422	0.35503	8.7422	8.5559	8.9109	0	519	52	0.97729762293174	0.0343435388719882	0.97729762293174	395.317268406384	0	13.8919748249823						1379	41	5	NaN	NaN	NaN	2.7609E-07	1	15221	117.99	103.22	1	519830			4366	1530	3704	3788	4366	4366		
EGTIGDMAILGITESFQVK	19	Unmodified	_EGTIGDMAILGITESFQVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.346841	2008.01869	0.43416	0.00029104	0.049955	3.3487E-05	0.48411	0.00032452	670.68124035535	19.703	0.079787	19.703	19.685	19.765	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	586.2950902594	0	9.77984067649697						174	10	4	NaN	NaN	NaN	0.03572	1	31780	24.164	21.449	1	35928			4367	1461	3705	3789	4367	4367		
EGTIGDMAILGITESFQVK	19	Unmodified	_EGTIGDMAILGITESFQVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.01662	2008.01869	1.4508	0.0014581	-0.74653	-0.00075028	0.7043	0.00070784	1005.51759251079	19.712	0.10639	19.712	19.676	19.782	0	177	55	1.2057522832638	0.0358092804160572	1.2057522832638	486.254808327282	0	14.4411377251676						528	13	5	NaN	NaN	NaN	2.0097E-19	1	31781	160.52	139.16	1	170040			4368	1461	3705	3789	4368	4368		
EGTIQVQGQALFFR	14	Unmodified	_EGTIQVQGQALFFR_			0	0	0	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.422822	1592.83109	1.2152	0.00096903	0.39759	0.00031705	1.6128	0.0012861	797.924385463905	13.992	0.15959	13.992	13.948	14.107	0	384	34	1.06790610341098	0.0220785024437311	1.06790610341098	431.434144587186	0	8.91971661661285						250	19	3	NaN	NaN	NaN	0.049312	1	21361	37.749	28.488	1	61882			4369	2560	3706	3790	4369	4369		
EGTYDGSWALADVMSQLK	18	Unmodified	_EGTYDGSWALADVMSQLK_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.961848	1969.90914	0.78664	0.00077559	0.89289	0.00088036	1.6795	0.001656	986.464053753379	19.055	0.053202	19.055	19.029	19.082	0	207	46	1.18585551256002	0.0298636070193095	1.18585551256002	478.294363929892	0	12.0449707174844						245	7	5	NaN	NaN	NaN	8.9153E-07	1	31106	115.79	100.82	1	50284			4370	2546	3707	3791	4370	4370		
EGVFPDNFAVQINELDK	17	Unmodified	_EGVFPDNFAVQINELDK_			0	0	0	Q9Y5K6	Q9Y5K6	Q9Y5K6	CD2AP	CD2-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.978355	1933.94216	1.4796	0.0014323	1.6861	0.0016321	3.1657	0.0030644	967.981014722059	17.468	0.25714	17.468	17.38	17.637	0	231	55	1.16991841121525	0.0358683429143114	1.16991841121525	471.927799285556	0	14.468759507757						550	30	4	NaN	NaN	NaN	0.0032066	1	30406	65.12	60.039	1	98767			4371	3435	3708	3792	4371	4371		
EGVHGGLINK	10	Unmodified	_EGVHGGLINK_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	341.857574	1022.55089	-0.58696	-0.00020066	0.43431	0.00014847	-0.15265	-5.2184E-05	341.857659270582	3.0666	0.22167	3.0666	3.0311	3.2528	0	882	28	0.730840773481911	0.0184874931808973	0.730840773481911	445.006330800159	0	11.2569684186178						275	26	3	NaN	NaN	NaN	0.020802	1	4809	34.931	20.396	1	70599			4372	563	3709	3793	4372	4372		
EGVIGCLDLILK	12	Unmodified	_EGVIGCLDLILK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.375963	1328.73737	-0.015244	-1.0143E-05	1.036	0.00068935	1.0208	0.00067921	665.377253293439	17.912	0.097512	17.912	17.876	17.974	0	525	28	0.973257487423603	0.0181843844613631	0.973257487423603	393.868998849776	0	7.35906519605248						181	12	3	NaN	NaN	NaN	0.0073497	1	13258	50.297	41.823	1	41322			4373	1713	3710	3794	4373	4373		
EGVNQPAAVVMEDSSPHEALR	21	Unmodified	_EGVNQPAAVVMEDSSPHEALR_			0	0	0	Q86V48	Q86V48	Q86V48	LUZP1	Leucine zipper protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.026941	2235.05899	0.89217	0.00066558	2.6304	0.0019623	3.5225	0.0026279	746.363801836041	9.4962	0.15962	9.4962	9.4253	9.5849	0	441	28	1.02971785871157	0.0181191516407753	1.02971785871157	622.459314133897	0	10.9529368725499						216	19	4	NaN	NaN	NaN	0.044907	1	35041	28.664	23.847	1	49046			4374	2171	3711	3795	4374	4374		
EGVQGPLNVSLSEEGK	16	Unmodified	_EGVQGPLNVSLSEEGK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.917766	1641.82098	1.8648	0.0015327	-0.96022	-0.00078922	0.90456	0.00074347	822.418523700171	10.631	0.12411	10.631	10.569	10.693	0	399	55	1.0578662689527	0.0361459094054593	1.0578662689527	427.268111713981	0	14.5991935948057						415	15	3	NaN	NaN	NaN	2.9297E-09	1	22809	117.77	107.52	1	99882			4375	667	3712	3796	4375	4375		
EGVSAAFAVK	10	Unmodified	_EGVSAAFAVK_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.766374	977.518196	-0.85008	-0.00041634	-1.1987	-0.00058708	-2.0488	-0.0010034	489.76591654309	7.5624	0.17734	7.5624	7.4738	7.6511	8.8818E-16	738	31	0.829104889055312	0.020400551942483	0.829104889055312	336.769576633101	0	8.2863885274873						162	21	2	NaN	NaN	NaN	0.0085721	1	3788	29.31	22.547	1	44400			4376	2112	3713	3797	4376	4376		
EGVVECSFVK	10	Unmodified	_EGVVECSFVK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.281531	1152.54851	0.37317	0.00021542	0.11378	6.5685E-05	0.48695	0.00028111	577.281956778186	7.527	0.26607	7.527	7.456	7.7221	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	366.579787462258	0	10.6967259226372						387	31	2	NaN	NaN	NaN	0.012437	1	8125	44.82	37.67	1	146250			4377	1023	3714	3798	4377	4377		
EGVVGPELHHK	11	Unmodified	_EGVVGPELHHK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.21565	1200.62512	-0.75553	-0.00030313	0.88289	0.00035423	0.12736	5.1099E-05	401.215906734023	2.8538	0.23942	2.8538	2.7651	3.0045	0	873	25	0.737001551771189	0.016425306665147	0.737001551771189	447.874103255002	0	9.98162008704293						253	28	3	NaN	NaN	NaN	0.029906	1	9485	25.857	21.654	1	49694			4378	1816	3715	3799	4378	4378		
EGWPLDIR	8	Unmodified	_EGWPLDIR_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.258717	984.50288	0.039804	1.9634E-05	-0.32716	-0.00016138	-0.28736	-0.00014174	493.258567867805	12.955	0.1596	12.955	12.91	13.07	0	699	40	0.85560534332665	0.0264783729728815	0.85560534332665	347.499438605772	0	10.7540466116021						319	19	3	NaN	NaN	NaN	0.072788	1	3927	22.386	6.8878	1	81388			4379	2674	3716	3800	4379	4379		
EGYENFFDK	9	Unmodified	_EGYENFFDK_			0	0	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.748379	1147.4822	0.74557	0.00042852	-0.7143	-0.00041054	0.031271	1.7973E-05	575.249306558098	10.516	0.21282	10.516	10.365	10.578	0	618	31	0.910492137470517	0.020293211090572	0.910492137470517	369.06684601708	0	8.22582766454565						408	25	4	NaN	NaN	NaN	0.048758	1	7985	23.053	20.454	1	107820			4380	2848	3717	3801	4380	4380		
EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK	34	Unmodified	_EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	938.955791	3751.79406	0.97206	0.00091272	-1.4052	-0.0013194	-0.43314	-0.0004067	939.456408956007	18.674	0.062069	18.674	18.656	18.718	0	411	31	1.04982941439551	0.0201004566486325	1.04982941439551	844.039410642374	0	16.1603183819374						218	8	6	NaN	NaN	NaN	0.00020892	1	38722	29.441	29.391	1	49709			4381	1582	3718	3802	4381	4381		
EGYSGVGLLSR	11	Unmodified	_EGYSGVGLLSR_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.29857	1136.58259	0.81141	0.00046193	0.54018	0.00030752	1.3516	0.00076945	569.299017888202	9.381	0.23938	9.381	9.3189	9.5583	0	606	43	0.918606045818476	0.0283908138186021	0.918606045818476	372.398201045703	0	11.5094909731959						557	28	3	NaN	NaN	NaN	2.1002E-07	1	7709	132.39	57.905	1	323540			4382	866	3719	3803	4382	4382		
EGYVLTAVEGTIGDFK	16	Unmodified	_EGYVLTAVEGTIGDFK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.932885	1697.85122	1.2602	0.0010711	-4.6654	-0.0039653	-3.4052	-0.0028942	850.430829778882	17.539	0.1685	17.539	17.477	17.646	0	318	49	1.11199926528787	0.0320280154713002	1.11199926528787	449.008188368125	0	12.932419699101						396	20	4	NaN	NaN	NaN	0.0035973	1	24435	52.863	36.984	1	118680			4383	1452;1818	3720	3804	4383	4383		
EGYVPQEEVPVYENK	15	Unmodified	_EGYVPQEEVPVYENK_			0	0	0	Q9BRP8	Q9BRP8	Q9BRP8	WIBG	Partner of Y14 and mago	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.425424	1778.8363	2.5753	0.0022931	1.2653	0.0011267	3.8406	0.0034198	890.425835000081	9.5406	0.21278	9.5406	9.443	9.6558	0	330	103	1.10399226369747	0.0680221330178299	1.10399226369747	445.610703278339	0	27.456162084913						1147	25	5	NaN	NaN	NaN	0.00059862	1	26641	73.891	53.555	1	266890			4384	2710	3721	3805	4384	4384		
EHALLAYTLGVK	12	Unmodified	_EHALLAYTLGVK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.918722	1313.73434	-2.0126	-0.00088339	-0.7549	-0.00033134	-2.7675	-0.0012147	438.918353589069	10.8	0.20398	10.8	10.764	10.968	0	819	40	0.773912161060781	0.0266298140737402	0.773912161060781	469.84494996559	0	16.1670591193705						566	24	4	NaN	NaN	NaN	0.0044134	1	12778	58.916	54.713	1	201440			4385	1446	3722	3806	4385	4385		
EHALLAYTLGVK	12	Unmodified	_EHALLAYTLGVK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.874445	1313.73434	2.1434	0.0014101	0.84347	0.00055489	2.9869	0.001965	657.875228109876	10.809	0.44338	10.809	10.711	11.154	0	465	76	1.01360860968299	0.0504005871247442	1.01360860968299	410.246967666474	0	20.399084852883						1936	51	5	NaN	NaN	NaN	1.7469E-11	1	12780	167.76	148.5	1	2006300			4386	1446	3722	3806	4386	4386		
EHALTSGTIK	10	Unmodified	_EHALTSGTIK_			0	0	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.787838	1055.56112	1.2177	0.00064389	-0.75841	-0.00040104	0.45928	0.00024286	528.787397840447	2.7917	0.097551	2.7917	2.7562	2.8538	0	678	28	0.869855008346864	0.0183108263146563	0.869855008346864	352.95899338011	0	7.42994034863563						119	12	2	NaN	NaN	NaN	0.0010993	1	5612	81.642	59.256	1	30365			4387	1835	3723	3807	4387	4387		
EHAPSIIFMDEIDSIGSSR	19	Unmodified	_EHAPSIIFMDEIDSIGSSR_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.005366	2102.99427	-0.15226	-0.00010689	-1.1517	-0.00080852	-1.304	-0.0009154	702.338891900511	16.307	0.15958	16.307	16.253	16.413	0	612	40	0.914549654013882	0.0263720347724746	0.914549654013882	553.054960664147	0	15.9479417981423						559	19	5	NaN	NaN	NaN	9.4497E-15	1	33353	151.08	141.92	1	244470			4388	1369	3724	3808	4388	4388		
EHAPSIIFMDEIDSIGSSR	19	Unmodified	_EHAPSIIFMDEIDSIGSSR_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.50441	2102.99427	1.6634	0.0017507	-1.0061	-0.0010589	0.65735	0.00069186	1052.50373184224	16.307	0.133	16.307	16.271	16.404	0	177	37	1.2057522832638	0.0238597451657223	1.2057522832638	486.104005697098	0	9.61915466465013						351	16	5	NaN	NaN	NaN	0.019808	1	33354	30.862	28.472	1	78788			4389	1369	3724	3808	4389	4389		
EHDPVGQMVNNPK	13	Unmodified	_EHDPVGQMVNNPK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.848632	1463.68271	2.6918	0.0019727	-3.5764	-0.0026209	-0.88455	-0.00064824	732.845835289723	4.5386	0.24826	4.5386	4.4499	4.6982	0	453	109	1.02166545906632	0.0725919503124611	1.02166545906632	413.066715810409	0	29.3494492191641						1229	29	3	NaN	NaN	NaN	9.6053E-05	1	17379	118.91	110.91	1	382810			4390	1264	3725	3809	4390	4390		
EHDPVGQMVNNPK	13	Unmodified	_EHDPVGQMVNNPK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.901514	1463.68271	0.31328	0.00015316	1.5595	0.00076243	1.8728	0.0009156	488.902237368985	4.5563	0.17733	4.5563	4.4588	4.6361	0	750	70	0.820941264895493	0.0469898572272448	0.820941264895493	497.865483822275	0	28.4973225291094						669	21	4	NaN	NaN	NaN	2.0659E-05	1	17380	107.08	97.564	1	161920			4391	1264	3725	3809	4391	4391		
EHEEAVSVDR	10	Unmodified	_EHEEAVSVDR_			0	0	0	Q13126	Q13126	Q13126	MTAP	S-methyl-5-thioadenosine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.772916	1169.53128	1.3697	0.00080231	0.15737	9.2186E-05	1.527	0.0008945	585.772997282432	2.4281	0.18623	2.4281	2.4104	2.5966	0	687	22	0.863749705078866	0.0142496650202144	0.863749705078866	350.04146479467	0	5.77479052922371						116	22	2	NaN	NaN	NaN	0.0015386	1	8594	72.042	56.46	1	19911			4392	1630	3726	3810	4392	4392		
EHELLEQQK	9	Unmodified	_EHELLEQQK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.296027	1152.5775	1.4297	0.00082534	-3.2515	-0.0018771	-1.8218	-0.0010517	577.295382428071	2.8006	0.22166	2.8006	2.7474	2.969	0	642	46	0.894250814548268	0.0304630467152948	0.894250814548268	362.464428205104	0	12.3475099260854						260	26	3	NaN	NaN	NaN	4.9129E-05	1	8129	110.22	42.315	1	49929			4393	1667	3727	3811	4393	4393		
EHEVTIFVR	9	Unmodified	_EHEVTIFVR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.303655	1128.59276	1.0574	0.00059776	0.98862	0.00055887	2.046	0.0011566	565.304625143649	7.128	0.23951	7.128	7.0569	7.2964	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	369.140178399036	0	9.04958118743207						438	28	4	NaN	NaN	NaN	6.3045E-06	1	7493	137.88	97.68	1	261430			4394	1235	3728	3812	4394	4394		
EHEWMYTEALESLK	14	Unmodified	_EHEWMYTEALESLK_			0	0	0	Q9H4L7	Q9H4L7	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.40872	1764.80289	1.7887	0.0015801	2.7145	0.002398	4.5032	0.0039782	883.411433022864	14.134	0.088664	14.134	14.099	14.187	0	258	25	1.15196821829984	0.0159656004274038	1.15196821829984	465.004103415027	0	6.44468275625218						150	11	3	NaN	NaN	NaN	8.6298E-05	1	26257	64.266	61.964	1	32595			4395	2896	3729	3813	4395	4395		
EHFAQFGHVR	10	Unmodified	_EHFAQFGHVR_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	409.872106	1226.59449	-0.41385	-0.00016963	-0.52659	-0.00021584	-0.94045	-0.00038546	409.871742785859	4.2637	0.20395	4.2637	4.2283	4.4322	0	861	31	0.745211914437924	0.020520185688865	0.745211914437924	452.754746692457	0	12.4670731823333						366	24	4	NaN	NaN	NaN	2.3004E-05	1	10189	117.39	106.03	1	132910			4396	2831	3730	3814	4396	4396		
EHFAQFGHVR	10	Unmodified	_EHFAQFGHVR_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.304521	1226.59449	2.3846	0.0014649	-1.2634	-0.00077613	1.1212	0.00068876	614.303500721875	4.2637	0.13301	4.2637	4.2283	4.3613	0	537	31	0.965173861991602	0.0202146590130609	0.965173861991602	390.932236976189	0	8.18770812066975						268	16	4	NaN	NaN	NaN	1.6143E-07	1	10190	121.31	96.462	1	78056			4397	2831	3730	3814	4397	4397		
EHFQHVAAPYIAK	13	Unmodified	_EHFQHVAAPYIAK_			0	0	0	Q9H2P0	Q9H2P0	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.8937	1509.77285	2.3065	0.0017435	-0.75175	-0.00056825	1.5548	0.0011752	756.394023054645	5.7357	0.053201	5.7357	5.7091	5.7623	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	423.519846435143	0	8.12443579359638						94	7	2	NaN	NaN	NaN	0.0015925	1	18797	55.754	51.771	1	18641			4398	2871	3731	3815	4398	4398		
EHFQSYDLDHMEK	13	Unmodified	_EHFQSYDLDHMEK_			0	0	0	Q13564	Q13564	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.861937	1677.70932	2.3306	0.0019574	-1.1843	-0.00099465	1.1463	0.00096276	839.861054567411	6.4451	0.079798	6.4451	6.4008	6.4806	0	387	34	1.06589869032374	0.0220815471089169	1.06589869032374	430.435307651845	0	8.91705526007217						189	10	3	NaN	NaN	NaN	0.00051125	1	23836	72.846	65.706	1	42340			4399	1685	3732	3816	4399	4399		
EHFQSYDLDHMEK	13	Unmodified	_EHFQSYDLDHMEK_			0	0	0	Q13564	Q13564	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.243717	1677.70932	-0.033897	-1.899E-05	1.6569	0.00092827	1.623	0.00090928	560.244843285106	6.4363	0.09753	6.4363	6.4008	6.4983	0	717	28	0.84338031290707	0.0183439172239627	0.84338031290707	510.863098252673	0	11.1115119047802						203	12	4	NaN	NaN	NaN	5.4641E-06	1	23837	124.46	114.71	1	55098			4400	1685	3732	3816	4400	4400		
EHFSSEVTISNLLNLFQR	18	Unmodified	_EHFSSEVTISNLLNLFQR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.035766	2133.08547	-0.046415	-3.3049E-05	-0.17232	-0.0001227	-0.21874	-0.00015575	712.370479217676	19.774	0.026611	19.774	19.756	19.782	0	618	16	0.910492137470517	0.0101459012671226	0.910492137470517	550.550347323393	0	6.13495629082695						46	4	3	NaN	NaN	NaN	0.0009939	1	33785	71.219	69.248	1	8270.3			4401	2900	3733	3817	4401	4401		
EHFWSIDQTEFR	12	Unmodified	_EHFWSIDQTEFR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.867879	1593.72121	0.70872	0.00056547	1.612	0.0012862	2.3207	0.0018516	797.869438354351	11.882	0.079831	11.882	11.855	11.935	0	414	25	1.04781950764076	0.0160803646300043	1.04781950764076	423.317115956195	0	6.49643715263903						109	10	2	NaN	NaN	NaN	0.00070304	1	21381	46.033	43.554	1	22547			4402	3136	3734	3818	4402	4402		
EHGLIFMETSAK	12	Unmodified	_EHGLIFMETSAK_			0	0	0	P61019;Q8WUD1	P61019	P61019	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.839745	1361.66494	1.7375	0.0011847	0.92465	0.00063046	2.6621	0.0018151	681.840161952734	9.0174	0.19512	9.0174	8.9109	9.106	0	471	67	1.00957851518677	0.0443678361345767	1.00957851518677	408.466100953974	0	17.9508148807056						511	23	3	NaN	NaN	NaN	1.5427E-07	1	14250	127.93	93.148	1	227400			4403	1322	3735	3819	4403	4403		
EHGLNPDVVQNIQDICNSK	19	Unmodified	_EHGLNPDVVQNIQDICNSK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.351536	2179.03278	0.21503	0.00015641	-0.24705	-0.00017969	-0.032012	-2.3284E-05	727.685847266323	11.545	0.11539	11.545	11.5	11.616	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	550.475310567393	0	13.4950658480516						393	14	5	NaN	NaN	NaN	4.69E-11	1	34434	171.14	128.2	1	132000			4404	2129	3736	3820	4404	4404		
EHGLNPDVVQNIQDICNSK	19	Unmodified	_EHGLNPDVVQNIQDICNSK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.52367	2179.03278	1.0492	0.0011442	-0.063094	-6.8806E-05	0.98609	0.0010754	1091.02643786927	11.545	0.062204	11.545	11.518	11.58	0	156	19	1.21966378336455	0.0119200536402524	1.21966378336455	491.599899037237	0	4.80451846319608						129	8	4	NaN	NaN	NaN	0.0014581	1	34435	55.782	55.307	1	23731			4405	2129	3736	3820	4405	4405		
EHHFEAIALVEK	12	Unmodified	_EHHFEAIALVEK_			0	0	0	O43488	O43488	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.872434	1421.73031	1.6802	0.0011961	-2.3146	-0.0016477	-0.63445	-0.00045164	711.871112901631	7.9083	0.11521	7.9083	7.8818	7.997	0	486	25	0.999498404980629	0.0161337505037445	0.999498404980629	404.216053383193	0	6.52479375894461						163	14	3	NaN	NaN	NaN	3.0211E-05	1	16153	112.93	98.47	1	57236			4406	205	3737	3821	4406	4406		
EHHFEAIALVEK	12	Unmodified	_EHHFEAIALVEK_			0	0	0	O43488	O43488	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.917381	1421.73031	0.40649	0.00019305	1.1666	0.00055404	1.5731	0.00074709	474.917983635767	7.9172	0.13303	7.9172	7.8729	8.0059	-8.8818E-16	660	31	0.882057989648486	0.0203326589411038	0.882057989648486	535.077725513968	0	12.3342830375503						277	16	4	NaN	NaN	NaN	0.00079643	1	16154	74.424	63.637	1	73464			4407	205	3737	3821	4407	4407		
EHHFGSSGMTLHER	14	Unmodified	_EHHFGSSGMTLHER_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	406.937582	1623.72122	-0.96874	-0.00039422	2.7855	0.0011335	1.8167	0.00073929	407.18987743605	3.3415	0.097523	3.3415	3.3237	3.4213	0	828	25	0.767766820543916	0.016391000507895	0.767766820543916	620.247447879296	0	13.2416196704199						193	12	4	NaN	NaN	NaN	0.045402	1	22294	34.193	30.21	1	45311			4408	3355	3738	3822	4408	4408		
EHIAASVSIPSEK	13	Unmodified	_EHIAASVSIPSEK_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.361899	1366.70924	1.5399	0.0010538	-1.8877	-0.0012918	-0.34781	-0.00023803	684.361930003741	6.3919	0.12413	6.3919	6.3387	6.4629	0	519	34	0.97729762293174	0.0222161383936255	0.97729762293174	395.390896011102	0	8.98811033532593						261	15	3	NaN	NaN	NaN	0.0029504	1	14400	67.548	56.761	1	63018			4409	1081	3739	3823	4409	4409		
EHIIGQESAIATVGAAIR	18	Unmodified	_EHIIGQESAIATVGAAIR_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.502332	1834.99011	1.3566	0.001246	-1.4923	-0.0013707	-0.13574	-0.00012468	918.500771716376	11.704	0.079818	11.704	11.678	11.758	0	252	25	1.15595906938629	0.0159612109798972	1.15595906938629	466.475917466427	0	6.4409897659055						131	10	3	NaN	NaN	NaN	0.00010074	1	28113	56.08	54.37	1	31514			4410	2839	3740	3824	4410	4410		
EHIMQMLQNPDWK	13	Unmodified	_EHIMQMLQNPDWK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.394893	1668.77523	1.4144	0.0011815	2.5024	0.0020905	3.9168	0.0032721	835.398109256703	12.024	0.22168	12.024	11.944	12.165	0	378	49	1.07192009927972	0.032111976565327	1.07192009927972	432.885867047722	0	12.9681501703703						318	26	2	NaN	NaN	NaN	3.0019E-07	1	23592	106.11	95.862	1	128860			4411	74	3741	3825	4411	4411		
EHINLGCDMDFDIAGPSIR	19	Unmodified	_EHINLGCDMDFDIAGPSIR_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.666468	2158.97757	0.40976	0.0002953	-1.0821	-0.00077982	-0.67232	-0.00048452	721.000074896026	14.639	0.27492	14.639	14.586	14.861	0	627	58	0.90440375274676	0.038565133185127	0.90440375274676	546.826476131334	0	23.3175015219817						1046	32	6	NaN	NaN	NaN	2.5388E-05	1	34154	133.93	132.56	1	413390			4412	794	3742	3826	4412	4412		
EHINLGCDMDFDIAGPSIR	19	Oxidation (M)	_EHINLGCDM(Oxidation (M))DFDIAGPSIR_	EHINLGCDM(1)DFDIAGPSIR	EHINLGCDM(59)DFDIAGPSIR	0	1	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.998106	2174.97249	-0.13089	-9.5027E-05	1.0435	0.00075758	0.91261	0.00066255	726.332908836375	12.573	0.097531	12.573	12.529	12.626	0	621	34	0.908462957275599	0.0223209853619647	0.908462957275599	549.254971364814	0	13.4952251796669						303	12	4	NaN	NaN	NaN	0.0010789	1	34370	59.171	58.696	1	57049			4413	794	3742	3827	4413	4413	262	
EHINSVSAMK	10	Unmodified	_EHINSVSAMK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.279323	1114.54409	1.2616	0.00070433	-1.2439	-0.00069444	0.017721	9.893E-06	558.278120635663	2.9424	0.15074	2.9424	2.8981	3.0488	0	666	31	0.877991458330206	0.0203383037367069	0.877991458330206	356.017601164179	0	8.24699834991748						219	18	3	NaN	NaN	NaN	0.0059718	1	7111	59.645	36.07	1	45701			4414	1737	3743	3828	4414	4414		
EHLGHESDNLLFVQITGK	18	Unmodified	_EHLGHESDNLLFVQITGK_			0	0	0	Q6FI81	Q6FI81	Q6FI81	CIAPIN1	Anamorsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.02363	2036.0327	1.1251	0.0011465	-0.91275	-0.00093012	0.21231	0.00021635	1019.52471884456	11.802	0.070959	11.802	11.766	11.837	0	180	34	1.203763835057	0.02187293336483	1.203763835057	485.407047328302	0	8.82006560741041						161	9	3	NaN	NaN	NaN	0.0031879	1	32263	18.396	17.027	1	27708			4415	2031	3744	3829	4415	4415		
EHLGHESDNLLFVQITGK	18	Unmodified	_EHLGHESDNLLFVQITGK_			0	0	0	Q6FI81	Q6FI81	Q6FI81	CIAPIN1	Anamorsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.684844	2036.0327	0.61245	0.00041627	0.92374	0.00062785	1.5362	0.0010441	680.019519565532	11.802	0.10642	11.802	11.731	11.837	0	534	58	0.967195187796614	0.0384158376205809	0.967195187796614	585.01730383759	0	23.2361885511995						353	13	4	NaN	NaN	NaN	6.6133E-05	1	32264	66.485	64.384	1	73711			4416	2031	3744	3829	4416	4416		
EHLLGDSAIDR	11	Unmodified	_EHLLGDSAIDR_			0	0	0	Q86TU7	Q86TU7	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.312209	1224.60986	1.2507	0.00076707	5.531	0.0033922	6.7817	0.0041593	613.313958158608	5.8775	0.20399	5.8775	5.8066	6.0106	0	576	55	0.938871150116794	0.0364317543257808	0.938871150116794	380.285464314704	0	14.7565154258444						356	24	4	NaN	NaN	NaN	0.0044156	1	10139	81.335	52.026	1	79190			4417	2159	3745	3830	4417	4417		
EHLLSYLEK	9	Unmodified	_EHLLSYLEK_			0	0	0	Q9NYL9	Q9NYL9	Q9NYL9	TMOD3	Tropomodulin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.305864	1130.59717	1.1103	0.00062877	2.7131	0.0015364	3.8234	0.0021652	566.306978488129	8.7599	0.17744	8.7599	8.6979	8.8753	0	600	43	0.922661313351899	0.0283750805572571	0.922661313351899	374.065907728566	0	11.5038423221213						358	21	3	NaN	NaN	NaN	2.4134E-05	1	7549	108.3	77.71	1	106710			4418	3119	3746	3831	4418	4418		
EHLLTNHLK	9	Unmodified	_EHLLTNHLK_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	368.876857	1103.60874	0.11413	4.2099E-05	-8.1927	-0.0030221	-8.0786	-0.00298	369.20710825389	3.2883	0.1064	3.2883	3.2617	3.3681	0	900	31	0.718511479433384	0.0205545600736583	0.718511479433384	437.072881648408	0	12.503406082661						158	13	3	NaN	NaN	NaN	0.067234	1	6821	22.386	4.9908	1	30093			4419	621	3747	3832	4419	4419		
EHLLTNHLK	9	Unmodified	_EHLLTNHLK_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.811648	1103.60874	1.6573	0.00091615	-7.1692	-0.0039632	-5.512	-0.0030471	553.307915521481	3.2971	0.11528	3.2971	3.2617	3.3769	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	370.063843421515	0	7.40519887352809						187	14	3	NaN	NaN	NaN	0.00067704	1	6822	88.921	61.184	1	38952			4420	621	3747	3832	4420	4420		
EHMGNVVEALIALTN	15	Unmodified	_EHMGNVVEALIALTN_			0	0	0	Q9NX55	Q9NX55	Q9NX55	HYPK	Huntingtin-interacting protein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.913972	1609.81339	1.7272	0.001392	-1.3954	-0.0011246	0.33182	0.00026742	805.913188688837	19.845	0.079785	19.845	19.827	19.907	0	390	46	1.06389100039157	0.0301236649306122	1.06389100039157	429.772962369977	0	12.1688563113185						356	10	5	NaN	NaN	NaN	4.3242E-17	1	21889	188.88	180.51	1	140470			4421	3097	3748	3833	4421	4421		
EHMGNVVEALIALTN	15	Oxidation (M)	_EHM(Oxidation (M))GNVVEALIALTN_	EHM(1)GNVVEALIALTN	EHM(41)GNVVEALIALTN	0	1	0	Q9NX55	Q9NX55	Q9NX55	HYPK	Huntingtin-interacting protein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.91143	1625.80831	1.0195	0.00082982	-0.79595	-0.00064783	0.2236	0.00018199	814.41229359704	18.754	0.088662	18.754	18.71	18.798	0	375	46	1.07392668217569	0.0301112043248537	1.07392668217569	433.790595736394	0	12.1628016876871						270	11	4	NaN	NaN	NaN	0.006156	1	22358	41.317	20.167	1	54499			4422	3097	3748	3834	4422	4422	634	
EHMQPTHPIR	10	Unmodified	_EHMQPTHPIR_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.876751	1244.60842	-1.0414	-0.00043308	1.1646	0.00048434	0.12326	5.1261E-05	415.877362801217	2.1	0.097524	2.1	2.0823	2.1798	0	822	16	0.771863999559055	0.010242234393518	0.771863999559055	468.871840694207	0	6.22168580948681						89	12	2	NaN	NaN	NaN	0.00060016	1	10763	91.783	81.704	1	17644			4423	1361	3749	3835	4423	4423		
EHPDAWTR	8	Unmodified	_EHPDAWTR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.235773	1010.45699	0.48836	0.00024723	-0.57442	-0.00029079	-0.086054	-4.3564E-05	506.235497392743	2.7828	0.23054	2.7828	2.7474	2.9779	0	738	49	0.829104889055312	0.0326318160888205	0.829104889055312	336.617229092927	0	13.2485426839112						403	27	3	NaN	NaN	NaN	0.040654	1	4510	44.767	39.459	1	88775			4424	135	3750	3836	4424	4424		
EHPDRFIECYIAEQNMVSIAVGCATR	26	Unmodified	_EHPDRFIECYIAEQNMVSIAVGCATR_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	767.361213	3065.41574	0.18319	0.00014057	-0.069752	-5.3525E-05	0.11344	8.7048E-05	767.612036179738	16.617	0.079807	16.617	16.59	16.67	0	510	16	0.983355730988811	0.0100940546034159	0.983355730988811	791.250206697423	0	8.12210936457006						90	10	3	NaN	NaN	NaN	0.0013431	1	38311	22.754	22.731	1	16113			4425	888	3751	3837	4425	4425		
EHPEALSCLLLQLR	14	Unmodified	_EHPEALSCLLLQLR_			0	0	0	Q68E01	Q68E01	Q68E01	INTS3	Integrator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.303018	1677.88723	-2.179	-0.0012209	-0.16508	-9.2493E-05	-2.344	-0.0013134	560.303004813811	15.916	0.079826	15.916	15.881	15.961	0	756	25	0.816857749704129	0.0163386061083168	0.816857749704129	494.797090534612	0	9.89682079739629						141	10	3	NaN	NaN	NaN	0.00014872	1	23861	114.39	99.246	1	28982			4426	2024	3752	3838	4426	4426		
EHPFLVK	7	Unmodified	_EHPFLVK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.247621	868.480688	-0.36545	-0.00015906	2.0777	0.00090431	1.7123	0.00074525	435.248533707025	4.4677	0.19504	4.4677	4.4233	4.6184	0	738	31	0.829104889055312	0.0203977162825675	0.829104889055312	337.35547643032	0	8.29965108809887						260	23	2	NaN	NaN	NaN	0.030661	1	1842	64.547	54.995	1	60164			4427	1465	3753	3839	4427	4427		
EHPWEVMPDLYFYRDPEEIEK	21	Unmodified	_EHPWEVMPDLYFYRDPEEIEK_			0	0	1	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	681.317802	2721.2421	0.94646	0.00064484	-0.84071	-0.00057279	0.10575	7.2051E-05	681.568020235781	15.775	0.18621	15.775	15.686	15.872	0	555	61	0.953040030838688	0.0404909431066049	0.953040030838688	767.294709825855	0	32.5993509571859						1126	22	7	NaN	NaN	NaN	5.7664E-11	1	37666	133.47	126.48	1	516300			4428	592	3754	3840	4428	4428		
EHPWEVMPDLYFYRDPEEIEK	21	Unmodified	_EHPWEVMPDLYFYRDPEEIEK_			0	0	1	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	908.087978	2721.2421	1.4229	0.0012921	0.38516	0.00034976	1.808	0.0016419	908.422242536195	15.775	0.14188	15.775	15.712	15.854	0	468	103	1.01159370163332	0.0685022360539358	1.01159370163332	610.828448278665	0	41.3635578047632						1496	17	7	NaN	NaN	NaN	8.2989E-08	1	37667	123.24	107.46	1	703250			4429	592	3754	3840	4429	4429		
EHPWEVMPDLYFYRDPEEIEK	21	Oxidation (M)	_EHPWEVM(Oxidation (M))PDLYFYRDPEEIEK_	EHPWEVM(1)PDLYFYRDPEEIEK	EHPWEVM(53)PDLYFYRDPEEIEK	0	1	1	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	685.316531	2737.23702	0.56172	0.00038496	-0.27416	-0.00018789	0.28756	0.00019707	685.56682537666	14.187	0.088663	14.187	14.143	14.232	-1.7764E-15	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	768.900608899372	0	21.1728135735148						301	11	4	NaN	NaN	NaN	0.00070698	1	37716	53.363	52.266	1	60916			4430	592	3754	3841	4430	4430	160	
EHQHEEIQNVR	11	Unmodified	_EHQHEEIQNVR_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.563889	1417.66984	-1.0153	-0.00048082	2.407	0.0011399	1.3917	0.00065906	473.564876997263	2.0113	0.20403	2.0113	1.9847	2.1887	0	804	25	0.78414869089473	0.0163727478201636	0.78414869089473	475.696677200816	0	9.93237867401393						208	24	3	NaN	NaN	NaN	1.8976E-05	1	16001	132.39	123.41	1	44031			4431	2029	3755	3842	4431	4431		
EHQQELEILK	10	Unmodified	_EHQQELEILK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.838059	1265.66157	1.3306	0.00084341	1.4532	0.00092112	2.7839	0.0017645	633.838888999281	6.6402	0.097543	6.6402	6.5959	6.6934	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.342207657742	0	8.99404776686157						137	12	2	NaN	NaN	NaN	0.0057109	1	11385	50.297	38.937	1	29894			4432	1668	3756	3843	4432	4432		
EHSIDGTGWAPTR	13	Unmodified	_EHSIDGTGWAPTR_			0	0	0	Q969M7	Q969M7	Q969M7	UBE2F	NEDD8-conjugating enzyme UBE2F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.839122	1425.66369	2.4731	0.0017654	-1.037	-0.00074025	1.4361	0.0010251	713.837508603459	5.9929	0.15967	5.9929	5.9396	6.0993	0	492	49	0.995464410099171	0.0322719687631251	0.995464410099171	402.573923227267	0	13.0510472734478						488	19	5	NaN	NaN	NaN	0.0017156	1	16247	54.27	44.02	1	143870			4433	2460	3757	3844	4433	4433		
EHTAYYIK	8	Unmodified	_EHTAYYIK_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.758549	1023.50255	1.346	0.00069019	1.0161	0.000521	2.3621	0.0012112	512.758727525045	3.3503	0.16857	3.3503	3.2971	3.4657	0	669	43	0.875957769340875	0.0284854887682705	0.875957769340875	355.578620387235	0	11.5631496766098						294	20	2	NaN	NaN	NaN	0.0034893	1	4829	75.243	48.787	1	117760			4434	927	3758	3845	4434	4434		
EHTLAWK	7	Unmodified	_EHTLAWK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.734877	883.455202	-0.47583	-0.00021066	0.94623	0.00041893	0.4704	0.00020826	442.735374871747	3.9179	0.22166	3.9179	3.8647	4.0864	0	801	46	0.78619514174348	0.0306796823785485	0.78619514174348	319.811539096338	0	12.4800013629082						389	26	3	NaN	NaN	NaN	0.0034997	1	2053	96.51	73.201	1	97773			4435	801	3759	3846	4435	4435		
EHTSHLEAELEK	12	Unmodified	_EHTSHLEAELEK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.900167	1421.67867	1.0671	0.00050676	0.88182	0.00041878	1.9489	0.00092554	474.900647903346	3.6962	0.088657	3.6962	3.6696	3.7583	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	523.971661521028	0	11.1139650935077						124	11	3	NaN	NaN	NaN	0.0017147	1	16139	50.834	41.32	1	27426			4436	3158	3760	3847	4436	4436		
EHVEEISELFYDAK	14	Unmodified	_EHVEEISELFYDAK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.27367	1707.79918	-0.32396	-0.00018474	-0.76208	-0.00043459	-1.086	-0.00061933	570.273409150071	13.132	0.10641	13.132	13.088	13.194	0	681	31	0.867820189810857	0.0203524260142245	0.867820189810857	525.591352314318	0	12.3263542808619						257	13	4	NaN	NaN	NaN	3.6952E-06	1	24697	130.79	115.64	1	72082			4437	3331	3761	3848	4437	4437		
EHVEEISELFYDAK	14	Unmodified	_EHVEEISELFYDAK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.906867	1707.79918	1.6366	0.0013992	-0.17843	-0.00015254	1.4582	0.0012466	854.90668161666	13.132	0.088683	13.132	13.096	13.185	0	414	97	1.04781950764076	0.0642328680497826	1.04781950764076	423.073419518059	0	25.9350192787121						501	11	3	NaN	NaN	NaN	2.5923E-17	1	24698	153.25	142.46	1	111450			4438	3331	3761	3848	4438	4438		
EHVEPVFGFPQFVR	14	Unmodified	_EHVEPVFGFPQFVR_			0	0	0	O75792	O75792	O75792	RNASEH2A	Ribonuclease H2 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.291219	1686.85183	-2.1908	-0.0012341	2.2075	0.0012435	0.016666	9.3878E-06	563.292875058515	14.932	0.10642	14.932	14.879	14.985	0	777	25	0.802556497112065	0.0163499748034793	0.802556497112065	486.113213465891	0	9.90327636796383						160	13	3	NaN	NaN	NaN	0.029044	1	24105	27.589	24.918	1	31236			4439	358	3762	3849	4439	4439		
EHVGTDQFGNK	11	Unmodified	_EHVGTDQFGNK_			0	0	0	Q8N183	Q8N183	Q8N183	NDUFAF2	Mimitin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.288734	1230.56291	1.9163	0.001181	-0.46144	-0.00028438	1.4549	0.00089663	616.288670832146	2.9602	0.20393	2.9602	2.9158	3.1198	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	363.837909136221	0	8.22493049805621						325	24	3	NaN	NaN	NaN	1.7834E-11	1	10314	141.29	93.136	1	72313			4440	2238	3763	3850	4440	4440		
EHVIEALR	8	Unmodified	_EHVIEALR_			0	0	0	P27635	P27635	P27635	RPL10	60S ribosomal protein L10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.771991	965.529429	1.5117	0.00073133	1.3946	0.00067467	2.9063	0.001406	483.77270292782	4.5652	0.21279	4.5652	4.512	4.7248	0	690	55	0.86171403876517	0.0366394639132938	0.86171403876517	350.075182978629	0	14.8849461151469						629	25	5	NaN	NaN	NaN	1.0981E-17	1	3556	216.16	171.74	1	793200			4441	864	3764	3851	4441	4441		
EHVMNEVDTNK	11	Unmodified	_EHVMNEVDTNK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.300984	1314.58741	1.4107	0.00092869	0.66235	0.00043603	2.0731	0.0013647	658.300705801028	2.8981	0.13303	2.8981	2.8715	3.0045	0	594	25	0.926715457081489	0.0162165760860672	0.926715457081489	375.075384685684	0	6.56343699383388						137	16	3	NaN	NaN	NaN	0.0063979	1	12786	41.796	35.105	1	22488			4442	1467	3765	3852	4442	4442		
EHVNVVFIGHVDAGK	15	Unmodified	_EHVNVVFIGHVDAGK_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.928271	1619.84199	2.8842	0.0023389	0.20862	0.00016917	3.0928	0.0025081	811.431505708777	8.2188	0.31057	8.2188	8.0502	8.3608	0	357	43	1.08596037261705	0.0280747465403823	1.08596037261705	438.665003522069	0	11.3405692330551						449	36	4	NaN	NaN	NaN	1.7729E-08	1	22192	103.23	92.98	1	91262			4443	709;2224	3766	3853	4443	4443		
EHWSHDPFEAFK	12	Unmodified	_EHWSHDPFEAFK_			0	0	0	Q03154	Q03154	Q03154	ACY1	Aminoacylase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.565119	1528.67353	-1.18	-0.00060247	0.27168	0.00013871	-0.90833	-0.00046376	510.565531080318	9.5672	0.11527	9.5672	9.514	9.6292	0	753	28	0.81889964927511	0.0183770979161022	0.81889964927511	496.42983525966	0	11.1404855272766						212	14	3	NaN	NaN	NaN	0.0022669	1	19372	90.263	87.384	1	45210			4444	1536	3767	3854	4444	4444		
EIADGLCLEVEGK	13	Unmodified	_EIADGLCLEVEGK_			0	0	0	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.853049	1431.69155	1.3521	0.00096927	-0.23591	-0.00016911	1.1162	0.00080016	716.853096194966	11.758	0.31923	11.758	11.66	11.979	0	468	88	1.01159370163332	0.0583678639720664	1.01159370163332	409.080186841836	0	23.6034849373811						1051	37	5	NaN	NaN	NaN	0.0022509	1	16442	73.655	54.331	1	325880			4445	682	3768	3855	4445	4445		
EIADLGEALATAVIPQWQK	19	Unmodified	_EIADLGEALATAVIPQWQK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.036995	2052.08916	1.1556	0.00079165	-0.83919	-0.00057488	0.31644	0.00021677	685.370449864916	19.827	0.097538	19.827	19.774	19.871	0	480	70	1.00353128488872	0.0463685348417228	1.00353128488872	606.963412526469	0	28.0449693648617						539	12	4	NaN	NaN	NaN	0.0013768	1	32571	78.864	74.31	1	146350			4446	1136	3769	3856	4446	4446		
EIADLGEALATAVIPQWQK	19	Unmodified	_EIADLGEALATAVIPQWQK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.05185	2052.08916	1.7725	0.0018204	-1.0167	-0.0010442	0.75579	0.00077624	1027.55284205331	19.827	0.15076	19.827	19.747	19.898	0	147	121	1.22562176648663	0.0794235821627918	1.22562176648663	494.194872820903	0	32.025155034932						936	18	5	NaN	NaN	NaN	9.6892E-36	1	32573	206.03	175.15	1	293140			4447	1136	3769	3856	4447	4447		
EIAEAYDVLSDPR	13	Unmodified	_EIAEAYDVLSDPR_			0	0	0	P25685	P25685	P25685	DNAJB1	DnaJ homolog subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.362096	1476.70964	1.6906	0.00125	2.5557	0.0018896	4.2463	0.0031395	739.864940979094	11.465	0.3725	11.465	11.367	11.74	0	411	70	1.04982941439551	0.0462470262962584	1.04982941439551	424.418516945216	0	18.6964606293549						964	43	3	NaN	NaN	NaN	1.571E-08	1	17789	129.69	44.687	1	544780			4448	839	3770	3857	4448	4448		
EIAEAYLGK	9	Unmodified	_EIAEAYLGK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.266207	992.517862	0.59277	0.00029476	-0.25465	-0.00012663	0.33812	0.00016814	497.266491935416	7.1545	0.29272	7.1545	7.0481	7.3408	0	678	94	0.869855008346864	0.063105728737505	0.869855008346864	353.247551637932	0	25.6271952876564						1116	34	3	NaN	NaN	NaN	0.012689	1	4118	45.489	20.235	1	805310			4449	640	3771	3858	4449	4449		
EIAEAYLGYPVTNAVITVPAYFNDSQR	27	Unmodified	_EIAEAYLGYPVTNAVITVPAYFNDSQR_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1001.16958	3000.4869	1.0026	0.0010037	0.18546	0.00018568	1.188	0.0011894	1001.50370630285	19.259	0.15076	19.259	19.179	19.33	0	348	136	1.09197348738011	0.0903711881987979	1.09197348738011	659.051949461149	0	54.5428148630549						1877	18	5	NaN	NaN	NaN	2.3508E-06	1	38226	68.13	63.037	1	479350			4450	618	3772	3859	4450	4450		
EIAEAYLGYPVTNAVITVPAYFNDSQR	27	Unmodified	_EIAEAYLGYPVTNAVITVPAYFNDSQR_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1001.16958	3000.4869	0.71305	0.00071389	0.69099	0.0006918	1.404	0.0014057	1001.50437849438	19.242	0.11529	19.242	19.179	19.295	0	201	121	1.18983705239708	0.0797732956865818	1.18983705239708	718.116727332994	0	48.1465406642066						659	14	3	NaN	NaN	NaN	0.031617	1	38227	12.465	12.361	1	140480			4451	618	3772	3859	4451	4451		
EIAEEYGGVMVSFPR	15	Unmodified	_EIAEEYGGVMVSFPR_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.40598	1682.79741	1.8347	0.0015455	0.17595	0.00014823	2.0106	0.0016937	842.406365438961	14.232	0.17733	14.232	14.187	14.365	0	204	31	1.18784641916898	0.0199077014377831	1.18784641916898	479.668821455437	0	8.03900532295125						340	21	4	NaN	NaN	NaN	4.8638E-05	1	23983	69.641	64.49	1	70628			4452	1498	3773	3860	4452	4452		
EIAQEFKTDLR	11	Unmodified	_EIAQEFKTDLR_			0	0	1	Q5TEC6	Q5TEC6	Q5TEC6	HIST2H3PS2	Histone H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.573503	1348.69868	-0.76056	-0.00034269	-0.32213	-0.00014514	-1.0827	-0.00048783	450.573225030069	7.6511	0.14193	7.6511	7.5979	7.7398	0	792	46	0.792332785124922	0.0306882249361655	0.792332785124922	480.898562047307	0	18.6259151718169						430	17	4	NaN	NaN	NaN	0.0071626	1	13860	44.82	26.484	1	161620			4453	2000	3774	3861	4453	4453		
EIAQEFKTDLR	11	Unmodified	_EIAQEFKTDLR_			0	0	1	Q5TEC6	Q5TEC6	Q5TEC6	HIST2H3PS2	Histone H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.356616	1348.69868	2.7368	0.0018483	1.163	0.00078544	3.8998	0.0026337	675.357647943077	7.6422	0.42572	7.6422	7.5358	7.9615	0	453	76	1.02166545906632	0.0503518675920445	1.02166545906632	413.3962997096	0	20.3738665737429						1116	49	5	NaN	NaN	NaN	8.8627E-05	1	13861	136.84	88.683	1	1861400			4454	2000	3774	3861	4454	4454		
EICAVLAAVTEVIR	14	Unmodified	_EICAVLAAVTEVIR_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.429258	1542.84396	1.4468	0.0011175	0.6277	0.00048485	2.0745	0.0016024	772.429863668875	19.729	0.044346	19.729	19.712	19.756	0	294	31	1.12800004657306	0.0199927208800443	1.12800004657306	455.839350089422	0	8.07931606046111						112	6	3	NaN	NaN	NaN	3.5478E-05	1	19834	78.043	61.755	1	28928			4455	1968	3775	3862	4455	4455		
EICCYSISCK	10	Unmodified	_EICCYSISCK_			0	0	0	Q9NVJ2;Q96BM9	Q9NVJ2	Q9NVJ2	ARL8B;ARL8A	ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.275066	1318.53558	1.4988	0.00098963	0.72926	0.00048151	2.2281	0.0014711	660.276154756542	6.2057	0.088677	6.2057	6.1791	6.2678	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.446808939413	0	8.18021945414625						208	11	4	NaN	NaN	NaN	0.054789	1	12917	11.355	8.4771	1	59412			4456	3069	3776	3863	4456	4456		
EICNAYTELNDPMR	14	Unmodified	_EICNAYTELNDPMR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.382179	1724.74981	2.9975	0.002588	1.7537	0.0015141	4.7512	0.0041021	863.382643985094	10.667	0.25712	10.667	10.525	10.782	0	351	58	1.08996939197032	0.0380883241812764	1.08996939197032	440.057262832989	0	15.3775361111832						774	30	3	NaN	NaN	NaN	4.0584E-06	1	25180	128.41	118.67	1	434860			4457	1801	3777	3864	4457	4457		
EICNAYTELNDPMR	14	Oxidation (M)	_EICNAYTELNDPM(Oxidation (M))R_	EICNAYTELNDPM(1)R	EICNAYTELNDPM(130)R	0	1	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.379636	1740.74472	2.585	0.0022526	-1.8626	-0.001623	0.72244	0.00062952	871.377883420157	8.485	0.14188	8.485	8.4229	8.5648	0	357	52	1.08596037261705	0.0340790239869053	1.08596037261705	438.406579073941	0	13.7578393291396						514	17	4	NaN	NaN	NaN	8.4832E-06	1	25615	130.99	116.54	1	105980			4458	1801	3777	3865	4458	4458	570	
EICWNLQNIR	10	Unmodified	_EICWNLQNIR_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.337704	1344.66085	1.5183	0.0010224	-0.41257	-0.0002778	1.1058	0.00074455	673.337201027061	12.786	0.1685	12.786	12.68	12.848	0	528	46	0.971237000454584	0.0303031202144891	0.971237000454584	393.003419099262	0	12.2619194368584						499	20	4	NaN	NaN	NaN	0.0010219	1	13735	72.492	45.545	1	129290			4459	2786	3778	3866	4459	4459		
EIDCLSPEAQK	11	Unmodified	_EIDCLSPEAQK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.305735	1288.59692	2.2821	0.0014727	0.30396	0.00019615	2.5861	0.0016688	645.306198042712	5.7978	0.39909	5.7978	5.6647	6.0638	0	537	76	0.965173861991602	0.0505751639210029	0.965173861991602	390.722837290568	0	20.4738983532708						1263	44	5	NaN	NaN	NaN	0.057234	1	12013	36.24	28.058	1	935190			4460	1927	3779	3867	4460	4460		
EIDDEANSYFQR	12	Unmodified	_EIDDEANSYFQR_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.825877	1485.6372	1.3292	0.0009887	-0.68858	-0.00051218	0.64062	0.00047651	743.825289625486	8.7245	0.12433	8.7245	8.6623	8.7866	0	474	34	1.00756305028564	0.0221701170870099	1.00756305028564	407.308621713459	0	8.96229752706398						297	15	4	NaN	NaN	NaN	1.6462E-05	1	18068	104.39	98.898	1	77202			4461	10	3780	3868	4461	4461		
EIDDSVLGQTGPYR	14	Unmodified	_EIDDSVLGQTGPYR_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.378277	1548.742	2.3005	0.0017837	-1.7763	-0.0013773	0.52422	0.00040647	775.377748818704	10.135	0.20394	10.135	10.073	10.277	0	426	34	1.03977710643793	0.0221272927649854	1.03977710643793	420.173100737721	0	8.94162138638148						446	24	4	NaN	NaN	NaN	9.0029E-06	1	19997	112.7	93.447	1	241400			4462	211	3781	3869	4462	4462		
EIDDTYIEDAADVDAR	16	Unmodified	_EIDDTYIEDAADVDAR_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.90251	1809.79047	1.4646	0.0013268	2.2154	0.002007	3.6801	0.0033338	905.904578542075	12.05	0.13301	12.05	12.015	12.148	0	309	52	1.11800162319566	0.0340086906463779	1.11800162319566	451.205674583821	0	13.7253058371687						469	16	4	NaN	NaN	NaN	1.2842E-08	1	27466	84.102	80.366	1	116010			4463	2640	3782	3870	4463	4463		
EIDLLLGQTDDTR	13	Unmodified	_EIDLLLGQTDDTR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.880652	1487.74675	1.3681	0.0010191	4.3172	0.0032158	5.6853	0.0042349	744.883715611494	13.256	0.23939	13.256	13.203	13.442	0	417	40	1.04580932352505	0.0261251880875029	1.04580932352505	422.764173527392	0	10.5610012280563						377	28	2	NaN	NaN	NaN	0.00025547	1	18173	86.243	64.239	1	205500			4464	350	3783	3871	4464	4464		
EIEDFDSLEALR	12	Unmodified	_EIEDFDSLEALR_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.848821	1435.68309	1.3132	0.00094401	1.6043	0.0011533	2.9175	0.0020973	718.850122150732	14.116	0.097531	14.116	14.063	14.161	0	447	49	1.02569221487577	0.0322185054318638	1.02569221487577	414.770467591043	0	13.0285522004056						341	12	3	NaN	NaN	NaN	0.0005032	1	16556	68.49	41.544	1	126370			4465	1075	3784	3872	4465	4465		
EIEDPEDR	8	Unmodified	_EIEDPEDR_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.722361	1001.43017	1.0474	0.00052551	2.6622	0.0013357	3.7096	0.0018612	501.723214176561	3.1641	0.35468	3.1641	3.0843	3.439	0	714	49	0.845418525735192	0.0326182134266176	0.845418525735192	343.282126863044	0	13.2446230342831						578	41	3	NaN	NaN	NaN	0.0089718	1	4308	72.492	62.413	1	255080			4466	870	3785	3873	4466	4466		
EIEELQSQAQALSQEGK	17	Unmodified	_EIEELQSQAQALSQEGK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.468352	1886.92215	2.5921	0.0024481	1.8432	0.0017408	4.4353	0.004189	944.971433141404	10.099	0.1064	10.099	10.055	10.161	0	255	31	1.15396378101328	0.0199570013831343	1.15396378101328	465.574566951036	0	8.05178847852164						374	13	5	NaN	NaN	NaN	7.9241E-36	1	29306	236.75	193.44	1	144620			4467	1511	3786	3874	4467	4467		
EIEGEEIEIVLAKPPDK	17	Unmodified	_EIEGEEIEIVLAKPPDK_			0	0	1	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.010335	1908.00917	2.0315	0.0012941	-1.2888	-0.00082101	0.7427	0.00047311	637.343615565394	12.857	0.31037	12.857	12.689	12.999	0	564	79	0.946969335010767	0.0526236673337342	0.946969335010767	573.043464496951	0	31.8443771393244						1587	36	4	NaN	NaN	NaN	1.4417E-10	1	29798	168.43	156.94	1	410640			4468	196	3787	3875	4468	4468		
EIEGEEIEIVLAKPPDK	17	Unmodified	_EIEGEEIEIVLAKPPDK_			0	0	1	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.011864	1908.00917	2.6942	0.0025729	-1.3035	-0.0012448	1.3907	0.0013281	955.512109462207	12.875	0.3902	12.875	12.618	13.008	0	144	55	1.22760721615852	0.0357503636804293	1.22760721615852	495.246569640108	0	14.4225650868385						1169	45	4	NaN	NaN	NaN	1.3115E-18	1	29799	183	163.11	1	361030			4469	196	3787	3875	4469	4469		
EIEHVMYHDWR	11	Unmodified	_EIEHVMYHDWR_			0	0	0	P82930	P82930	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.566354	1513.67723	-0.93827	-0.00047436	1.0198	0.00051556	0.081501	4.1204E-05	505.566748297572	6.6225	0.10642	6.6225	6.587	6.6934	0	762	25	0.812773098473386	0.0163408788985463	0.812773098473386	492.759568125719	0	9.90697704435161						200	13	4	NaN	NaN	NaN	8.9611E-05	1	18913	112.8	104.33	1	58814			4470	1476	3788	3876	4470	4470		
EIEHVMYHDWR	11	Unmodified	_EIEHVMYHDWR_			0	0	0	P82930	P82930	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.845893	1513.67723	1.8673	0.0014151	-0.024786	-1.8784E-05	1.8425	0.0013963	757.845809572158	6.6225	0.070924	6.6225	6.5959	6.6668	0	408	28	1.0518390438467	0.0180891625147663	1.0518390438467	425.134544218822	0	7.31131621896344						110	9	2	NaN	NaN	NaN	0.0020497	1	18914	64.064	59.236	1	27453			4471	1476	3788	3876	4471	4471		
EIEIAEQDMSALISLR	16	Unmodified	_EIEIAEQDMSALISLR_			0	0	0	O43865	O43865	O43865	AHCYL1	Putative adenosylhomocysteinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.469309	1816.92406	0.86591	0.00078752	1.1372	0.0010342	2.0031	0.0018217	909.470917724191	18.124	0.097522	18.124	18.08	18.178	0	273	55	1.14198628764525	0.0359275516564201	1.14198628764525	460.871703570914	0	14.4992913804321						290	12	3	NaN	NaN	NaN	1.6324E-06	1	27652	98.167	84.949	1	58640			4472	242	3789	3877	4472	4472		
EIEIDYTGTEPSSPCNK	17	Unmodified	_EIEIDYTGTEPSSPCNK_			0	0	0	Q9NV96	Q9NV96	Q9NV96	TMEM30A	Cell cycle control protein 50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.43312	1938.85169	2.393	0.0023222	0.20027	0.00019435	2.5933	0.0025166	970.434394283537	9.0617	0.11529	9.0617	9.0174	9.1326	0	249	22	1.15795408347545	0.0139631798244857	1.15795408347545	467.093144464814	0	5.63243885402738						185	14	3	NaN	NaN	NaN	6.9204E-05	1	30481	73.891	70.494	1	39493			4473	3061	3790	3878	4473	4473		
EIELIGSGGFGQVFK	15	Unmodified	_EIELIGSGGFGQVFK_			0	0	0	P19525	P19525	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.919581	1579.82461	0.26215	0.00020734	-0.11783	-9.3193E-05	0.14432	0.00011415	791.420562168665	16.723	0.088707	16.723	16.688	16.777	0	384	28	1.06790610341098	0.0180667195029678	1.06790610341098	431.464762736736	0	7.29947400701315						182	11	3	NaN	NaN	NaN	2.4662E-06	1	20972	96.946	74.902	1	39488			4474	770	3791	3879	4474	4474		
EIELIGSGGFGQVFK	15	Unmodified	_EIELIGSGGFGQVFK_			0	0	0	P19525	P19525	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.919581	1579.82461	0.55021	0.00043518	1.566	0.0012386	2.1162	0.0016737	790.920752605632	16.723	0.070954	16.723	16.688	16.759	0	267	40	1.14597988355104	0.0259637344402126	1.14597988355104	463.008807360797	0	10.4900948876559						174	9	3	NaN	NaN	NaN	0.056716	1	20973	33.1	29.998	1	26829			4475	770	3791	3879	4475	4475		
EIEMASEERPPAQALEIMMGLK	22	Unmodified	_EIEMASEERPPAQALEIMMGLK_			0	0	1	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.076027	2472.20625	0.68971	0.00056906	0.62697	0.00051729	1.3167	0.0010864	825.411316393911	17.557	0.20393	17.557	17.495	17.699	0	507	31	0.985374541851584	0.0201895069753196	0.985374541851584	595.301163074409	0	12.1972270175789						494	24	5	NaN	NaN	NaN	0.0010208	1	36687	41.499	38.425	1	118580			4476	869	3792	3880	4476	4476		
EIEMSVDDDDINSSK	15	Unmodified	_EIEMSVDDDDINSSK_			0	0	0	Q9NQW6	Q9NQW6	Q9NQW6	ANLN	Actin-binding protein anillin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.864539	1695.71453	1.7364	0.001474	3.8823	0.0032956	5.6187	0.0047695	848.868587302372	8.485	0.11528	8.485	8.4495	8.5648	0	390	31	1.06389100039157	0.0200782861239661	1.06389100039157	429.587164350684	0	8.10738505903493						212	14	4	NaN	NaN	NaN	0.0052401	1	24356	54.199	52.942	1	53570			4477	3004	3793	3881	4477	4477		
EIENMILNDPDFQHEDLNFLTR	22	Unmodified	_EIENMILNDPDFQHEDLNFLTR_			0	0	0	Q15067	Q15067	Q15067	ACOX1	Peroxisomal acyl-coenzyme A oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	901.762153	2702.26463	0.7937	0.00071572	0.83291	0.00075109	1.6266	0.0014668	902.097183119177	17.743	0.062069	17.743	17.716	17.779	0	459	25	1.01763759082241	0.0161136996889994	1.01763759082241	614.499851963262	0	9.73024794167486						161	8	4	NaN	NaN	NaN	3.496E-06	1	37609	63.947	61.033	1	30556			4478	1808	3794	3882	4478	4478		
EIEQEAAVELSQLR	14	Unmodified	_EIEQEAAVELSQLR_			0	0	0	P47985	P47985	P47985	UQCRFS1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.920309	1613.82606	2.2049	0.0017813	3.3056	0.0026707	5.5105	0.004452	807.924131849041	13.327	0.19512	13.327	13.265	13.46	0	300	115	1.12400150285141	0.0760771194989109	1.12400150285141	454.045752286931	0	30.7317142077452						733	23	4	NaN	NaN	NaN	1.8951E-11	1	22011	156.73	124.18	1	167170			4479	1103	3795	3883	4479	4479		
EIEQEAAVELSQLRDPQHDLDR	22	Unmodified	_EIEQEAAVELSQLRDPQHDLDR_			0	0	1	P47985	P47985	P47985	UQCRFS1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	648.572857	2590.26232	2.038	0.0013218	-1.5698	-0.0010181	0.46825	0.00030369	648.822531202277	12.893	0.17736	12.893	12.804	12.981	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	739.761763271391	0	17.9653271213651						477	21	6	NaN	NaN	NaN	2.4437E-16	1	37208	129.82	92.92	1	260470			4480	1103	3796	3884	4480	4480		
EIEQEAAVELSQLRDPQHDLDR	22	Unmodified	_EIEQEAAVELSQLRDPQHDLDR_			0	0	1	P47985	P47985	P47985	UQCRFS1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	864.428051	2590.26232	3.1325	0.0027078	-1.4853	-0.0012839	1.6472	0.0014239	864.761285438498	12.893	0.11529	12.893	12.839	12.955	0	414	70	1.04781950764076	0.0462534095691607	1.04781950764076	632.865212924808	0	27.9362749805962						616	14	4	NaN	NaN	NaN	8.0531E-08	1	37209	69.369	52.098	1	151370			4481	1103	3796	3884	4481	4481		
EIESEIDSEEELINK	15	Unmodified	_EIESEIDSEEELINK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.922911	1775.83127	2.0044	0.0017817	0.94126	0.00083671	2.9457	0.0026185	888.923068160228	11.651	0.28382	11.651	11.571	11.855	0	315	58	1.11400032671325	0.0379992536574683	1.11400032671325	449.656201170674	0	15.3380565850914						735	33	4	NaN	NaN	NaN	4.9471E-24	1	26558	181.87	151.52	1	235500			4482	1757	3797	3885	4482	4482		
EIESSPQYR	9	Unmodified	_EIESSPQYR_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.767103	1107.51965	0.98105	0.00054425	3.0772	0.0017071	4.0582	0.0022514	554.769052429635	3.4923	0.17746	3.4923	3.4035	3.581	0	678	52	0.869855008346864	0.0345823239613182	0.869855008346864	352.745651428414	0	14.0239054515844						237	21	2	NaN	NaN	NaN	0.044796	1	6911	26.456	21.148	1	43531			4483	2391	3798	3886	4483	4483		
EIEYEVVR	8	Unmodified	_EIEYEVVR_			0	0	0	P31327;P27708	P31327;P27708	P31327	CPS1;CAD	Carbamoyl-phosphate synthase [ammonia], mitochondrial;CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.769114	1035.52368	1.0756	0.00055799	-0.13428	-6.966E-05	0.94133	0.00048833	518.768776555941	7.1102	0.31045	7.1102	7.0214	7.3319	0	639	55	0.896281965493857	0.0365784873736561	0.896281965493857	363.772803973765	0	14.8460634368583						772	36	4	NaN	NaN	NaN	0.002226	1	5129	85.813	46.489	1	276930			4484	922;867	3799	3887	4484	4484		
EIFDIAFPDEQAEALAVER	19	Unmodified	_EIFDIAFPDEQAEALAVER_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.03386	2162.05316	0.83849	0.00090727	-0.053678	-5.8081E-05	0.78481	0.00084919	1082.53460570292	18.337	0.10639	18.337	18.284	18.39	0	114	85	1.24744674793813	0.0555507336132799	1.24744674793813	502.823164285013	0	22.39149342443						508	13	4	NaN	NaN	NaN	0.00072171	1	34207	51.829	49.44	1	105030			4485	990	3800	3888	4485	4485		
EIFEQPESVVNTMR	14	Unmodified	_EIFEQPESVVNTMR_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.908887	1677.80322	2.2863	0.0019203	-0.73291	-0.00061558	1.5534	0.0013047	839.908324640361	12.458	0.16845	12.458	12.361	12.529	0	357	49	1.08596037261705	0.0320765843324038	1.08596037261705	438.536490651535	0	12.9532836371561						517	20	3	NaN	NaN	NaN	8.0098E-06	1	23849	114.93	80.155	1	196720			4486	1558	3801	3889	4486	4486		
EIFGLYGQTTGK	12	Unmodified	_EIFGLYGQTTGK_			0	0	0	Q9NR31	Q9NR31	Q9NR31	SAR1A	GTP-binding protein SAR1a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.340435	1312.66632	1.6049	0.001055	0.18559	0.000122	1.7905	0.001177	657.340390509801	11.012	0.22167	11.012	10.924	11.146	0	516	43	0.979317271586824	0.028273132407321	0.979317271586824	396.371283755777	0	11.4433372240319						496	26	2	NaN	NaN	NaN	0.00023161	1	12735	94.66	39.425	1	367870			4487	3012	3802	3890	4487	4487		
EIFLSQPILLELEAPLK	17	Unmodified	_EIFLSQPILLELEAPLK_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.068985	1952.12342	1.2512	0.0012225	0.75925	0.00074184	2.0104	0.0019643	977.571027087079	20.049	0.062056	20.049	20.031	20.093	0	168	64	1.21171599086077	0.0417574339727618	1.21171599086077	488.755894201096	0	16.8432141977446						289	8	5	NaN	NaN	NaN	8.1202E-14	1	30759	119.79	114.97	1	157220			4488	1366;992;1365	3803	3891	4488	4488		
EIFNFVLK	8	Unmodified	_EIFNFVLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.289485	1008.56442	-0.21659	-0.00010944	-1.3591	-0.00068676	-1.5757	-0.0007962	505.288698937467	15.154	0.17734	15.154	15.092	15.269	0	675	37	0.871889544407995	0.0244161317005186	0.871889544407995	353.996760282959	0	9.91321845302582						461	21	4	NaN	NaN	NaN	0.0050231	1	4484	70.67	57.842	1	320530			4489	1465	3804	3892	4489	4489		
EIFSVLDLMK	10	Unmodified	_EIFSVLDLMK_			0	0	0	Q9NUJ3	Q9NUJ3	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.825575	1193.6366	-0.55859	-0.00033394	-0.81546	-0.0004875	-1.374	-0.00082144	597.824797352502	18.922	0.0532	18.922	18.896	18.949	0	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	374.649185774977	0	7.3921557824529						105	7	3	NaN	NaN	NaN	0.0028752	1	9268	69.716	49.482	1	20122			4490	3051	3805	3893	4490	4490		
EIGALLQQLR	10	Unmodified	_EIGALLQQLR_			0	0	0	Q96Q11	Q96Q11	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.840405	1139.66626	0.94634	0.00054021	-1.766	-0.0010081	-0.81963	-0.00046788	570.839356055073	13.806	0.14184	13.806	13.753	13.895	0	606	43	0.918606045818476	0.0283947491785544	0.918606045818476	372.386134650395	0	11.5107133673914						359	17	3	NaN	NaN	NaN	5.3888E-10	1	7790	155.82	97.391	1	134380			4491	2602	3806	3894	4491	4491		
EIGLLADEIEIYGK	14	Unmodified	_EIGLLADEIEIYGK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.919246	1561.82394	1.3368	0.0010453	1.4926	0.0011671	2.8294	0.0022123	781.920704777094	16.493	0.070923	16.493	16.475	16.546	0	345	28	1.09397730668811	0.0180343754835834	1.09397730668811	442.042535472434	0	7.28713567976956						143	9	3	NaN	NaN	NaN	1.1979E-05	1	20410	92.707	87.556	1	30867			4492	2083	3807	3895	4492	4492		
EIGLLSEEVELYGETK	16	Unmodified	_EIGLLSEEVELYGETK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.961839	1807.90913	1.6291	0.0014743	3.7457	0.0033897	5.3748	0.004864	905.467216071075	15.819	0.38131	15.819	15.677	16.058	-1.7764E-15	276	76	1.13998907770044	0.049916552848811	1.13998907770044	460.083057650685	0	20.1455967528996						1189	44	5	NaN	NaN	NaN	0.00014297	1	27433	87.573	72.598	1	296850			4493	656	3808	3896	4493	4493		
EIGNIISDAMK	11	Unmodified	_EIGNIISDAMK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.807913	1189.60127	1.0623	0.00063292	0.42582	0.00025371	1.4881	0.00088662	595.808264966494	12.485	0.25713	12.485	12.44	12.697	0	582	67	0.934820374997243	0.0445832499965069	0.934820374997243	378.768907872279	0	18.0641643702123						1867	30	6	NaN	NaN	NaN	0.00031085	1	9150	99.34	61.618	1	2000100			4494	635	3809	3897	4494	4494		
EIGNIISDAMK	11	Oxidation (M)	_EIGNIISDAM(Oxidation (M))K_	EIGNIISDAM(1)K	EIGNIISDAM(140)K	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.805371	1205.59619	1.2277	0.00074126	1.4106	0.00085173	2.6383	0.001593	603.806430291198	8.9021	0.35494	8.9021	8.7245	9.0794	0	576	73	0.938871150116794	0.0486026024446214	0.938871150116794	380.35232044105	0	19.6897227239179						1038	41	5	NaN	NaN	NaN	5.5554E-05	1	9620	136.84	94.766	1	578230			4495	635	3809	3898	4495	4495	179	
EIGNLLHPSVPISNDEDVDNK	21	Unmodified	_EIGNLLHPSVPISNDEDVDNK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.0484	2304.12337	0.83907	0.00064528	0.37796	0.00029067	1.217	0.00093595	769.38313128515	11.828	0.16852	11.828	11.775	11.944	0	561	46	0.948993180460448	0.0303660983099298	0.948993180460448	573.555503253841	0	18.3527586463338						793	20	5	NaN	NaN	NaN	6.7315E-08	1	35671	110.9	104.7	1	228450			4496	1139	3810	3899	4496	4496		
EIGQSVDEVEK	11	Unmodified	_EIGQSVDEVEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.803882	1231.59321	2.6065	0.0016077	0.96816	0.00059716	3.5746	0.0022049	616.804542979407	5.1149	0.25712	5.1149	5.0085	5.2657	0	564	61	0.946969335010767	0.0404629208582415	0.946969335010767	383.541375239001	0	16.3882860177098						659	30	4	NaN	NaN	NaN	0.0072525	1	10350	67.507	43.386	1	191800			4497	1511	3811	3900	4497	4497		
EIGWTDVGGWTGQGGSILGTK	21	Unmodified	_EIGWTDVGGWTGQGGSILGTK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.02637	2118.03818	1.1083	0.0011748	-0.30824	-0.00032674	0.80004	0.00084807	1060.5277616873	16.626	0.18622	16.626	16.573	16.759	0	153	88	1.22165005014568	0.0576175991562766	1.22165005014568	492.490303718149	0	23.2276902085023						1466	22	6	NaN	NaN	NaN	3.2352E-29	1	33587	168.69	157.71	1	797940			4498	1521	3812	3901	4498	4498		
EIHTVPDMGK	10	Unmodified	_EIHTVPDMGK_			0	0	0	Q15257	Q15257	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.781699	1125.54884	1.9643	0.0011074	-2.1458	-0.0012098	-0.18155	-0.00010235	563.780723469072	4.4322	0.30146	4.4322	4.3081	4.6095	0	615	34	0.912521036363781	0.0223209853619647	0.912521036363781	369.974841077045	0	9.04987686079363						442	35	3	NaN	NaN	NaN	0.02936	1	7405	33.426	22.724	1	101760			4499	1825	3813	3902	4499	4499		
EIIDLVLDR	9	Unmodified	_EIIDLVLDR_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.313689	1084.61282	0.68338	0.00037129	-1.0437	-0.00056708	-0.36036	-0.00019579	543.312770348859	15.278	0.70946	15.278	15.207	15.916	0	639	73	0.896281965493857	0.0487375152988332	0.896281965493857	363.556722698452	0	19.7692824542623						2119	81	5	NaN	NaN	NaN	0.0079072	1	6333	79.059	44.127	1	5436200			4500	1447;2696	3814	3903	4500	4500		
EIIDPVLDR	9	Unmodified	_EIIDPVLDR_			0	0	0	P68366	P68366	P68366	TUBA4A	Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.298039	1068.58152	0.83896	0.00044909	-1.2296	-0.0006582	-0.39065	-0.00020911	535.296967752525	10.418	0.17736	10.418	10.347	10.525	0	660	52	0.882057989648486	0.0345679267286869	0.882057989648486	357.854403583797	0	14.0243441449381						352	21	2	NaN	NaN	NaN	0.0064223	1	5930	79.059	47.106	1	284700			4501	1448	3815	3904	4501	4501		
EIILVDDYSNDPEDGALLGK	20	Unmodified	_EIILVDDYSNDPEDGALLGK_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.53643	2175.05831	0.96224	0.0010474	0.54724	0.00059569	1.5095	0.0016431	1089.03857453106	15.34	0.16859	15.34	15.296	15.464	-1.7764E-15	120	100	1.2434810169581	0.0654391287038398	1.2434810169581	501.20551604472	0	26.3763192394838						1369	20	5	NaN	NaN	NaN	3.4116E-47	1	34379	204.33	181.93	1	441910			4502	1586	3816	3905	4502	4502		
EIINTYTEAVQTVDPFK	17	Unmodified	_EIINTYTEAVQTVDPFK_			0	0	0	Q9HCS7	Q9HCS7	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.501663	1966.98877	0.66932	0.00065895	-5.6962	-0.0056079	-5.0269	-0.004949	985.49312953076	16.945	0.21285	16.945	16.839	17.051	0	183	91	1.20177511391933	0.059739566892506	1.20177511391933	484.720317859133	0	24.0951751434305						827	25	3	NaN	NaN	NaN	0.0024725	1	31049	62.494	52.473	1	211610			4503	2966	3817	3906	4503	4503		
EIIQDVTLHDLDVANAR	17	Unmodified	_EIIQDVTLHDLDVANAR_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.502529	1920.9905	1.2169	0.0011701	1.2535	0.0012053	2.4705	0.0023754	962.005770574185	13.247	0.079797	13.247	13.212	13.292	0	159	34	1.21767724410157	0.0218549328947115	1.21767724410157	491.216601462756	0	8.81638046020765						157	10	3	NaN	NaN	NaN	0.015182	1	30086	30.862	20.377	1	29223			4504	3331	3818	3907	4504	4504		
EIIQDVTLHDLDVANARPQGGQDILSMMGQLMK	33	Unmodified	_EIIQDVTLHDLDVANARPQGGQDILSMMGQLMK_			0	0	1	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	909.96002	3635.81097	0.69415	0.00063165	-0.9213	-0.00083835	-0.22715	-0.0002067	910.461242037562	19.8	0.026605	19.8	19.782	19.809	0	525	40	0.973257487423603	0.0262699700789047	0.973257487423603	782.569581139782	0	21.1229605185204						159	4	6	NaN	NaN	NaN	1.0052E-06	1	38699	43.271	41.633	1	30072			4505	3331	3819	3908	4505	4505		
EIISEMGELGVLGPTIK	17	Unmodified	_EIISEMGELGVLGPTIK_			0	0	0	Q92947	Q92947	Q92947	GCDH	Glutaryl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.48697	1784.95939	0.35569	0.00031781	0.79708	0.00071218	1.1528	0.00103	893.487218080638	16.936	0.079825	16.936	16.918	16.998	0	168	49	1.21171599086077	0.0317868179326015	1.21171599086077	489.078871234323	0	12.8299545040782						223	10	3	NaN	NaN	NaN	6.5206E-07	1	26837	112.95	94.444	1	41677			4506	2447	3820	3909	4506	4506		
EILEQGLFSK	10	Unmodified	_EILEQGLFSK_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.318971	1162.62339	0.31688	0.00018453	-1.2049	-0.00070162	-0.88799	-0.0005171	582.318103736631	11.811	0.15959	11.811	11.758	11.917	0	588	61	0.93076847747433	0.0405358392902467	0.93076847747433	377.227486694586	0	16.428610493996						390	19	4	NaN	NaN	NaN	3.118E-07	1	8420	112.8	54.376	1	151770			4507	2748	3821	3910	4507	4507		
EILGTAQSVGCNVDGR	16	Unmodified	_EILGTAQSVGCNVDGR_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.407043	1674.79953	2.6055	0.0021844	-4.542	-0.0038081	-1.9366	-0.0016236	838.402506692882	8.0325	0.21296	8.0325	7.9527	8.1656	0	372	25	1.07593298845566	0.0160493451484018	1.07593298845566	434.493592440631	0	6.48120069248728						251	25	3	NaN	NaN	NaN	4.4563E-12	1	23756	137.58	127.33	1	86437			4508	900	3822	3911	4508	4508		
EILGTAQSVGCNVDGR	16	Unmodified	_EILGTAQSVGCNVDGR_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.407043	1674.79953	3.2502	0.002725	-0.34367	-0.00028814	2.9065	0.0024369	838.4070191223	8.2721	0.26613	8.2721	8.1922	8.4584	0	387	169	1.06589869032374	0.112222029103326	1.06589869032374	430.44143095428	0	45.3185759869518						3626	31	5	NaN	NaN	NaN	1.2691E-44	1	23758	278.06	249.41	1	3510500			4509	900	3822	3911	4509	4509		
EILIPVFK	8	Unmodified	_EILIPVFK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.802229	957.589904	0.0124	5.9494E-06	-1.0552	-0.00050629	-1.0428	-0.00050034	479.801673882513	14.985	0.17734	14.985	14.923	15.101	0	645	55	0.892219381832517	0.0365734128676034	0.892219381832517	362.51031825891	0	14.8598425548865						485	21	3	NaN	NaN	NaN	0.0034616	1	3399	56.091	29.868	1	179350			4510	1235	3823	3912	4510	4510		
EILLEMIHSIQNSQDMR	17	Unmodified	_EILLEMIHSIQNSQDMR_			0	0	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.343325	2056.00815	-1.0622	-0.00072906	-0.052589	-3.6094E-05	-1.1148	-0.00076516	686.677706598906	17.362	0.12416	17.362	17.309	17.433	0	672	34	0.873923798053065	0.0223767933297507	0.873923798053065	528.566460738965	0	13.5339287925827						345	15	5	NaN	NaN	NaN	5.0469E-07	1	32641	96.313	81.338	1	83890			4511	455	3824	3913	4511	4511		
EILLEMIHSIQNSQDMR	17	Unmodified	_EILLEMIHSIQNSQDMR_			0	0	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.343325	2056.00815	0.0539	3.6994E-05	-0.4047	-0.00027777	-0.3508	-0.00024077	686.677391343857	17.362	0.13302	17.362	17.3	17.433	0	573	37	0.940896116921038	0.024301288635538	0.940896116921038	569.07264995779	0	14.6979017901243						493	16	5	NaN	NaN	NaN	5.2274E-11	1	32642	119.43	99.872	1	181040			4512	455	3824	3913	4512	4512		
EILLEMIHSIQNSQDMR	17	Unmodified	_EILLEMIHSIQNSQDMR_			0	0	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.01135	2056.00815	0.38313	0.00039425	1.0364	0.0010665	1.4196	0.0014608	1029.51431044836	17.362	0.12416	17.362	17.309	17.433	0	96	49	1.2593374219024	0.031704128038238	1.2593374219024	507.783178242395	0	12.7835658804937						543	15	5	NaN	NaN	NaN	5.9379E-10	1	32643	98.167	95.452	1	155650			4513	455	3824	3913	4513	4513		
EILLEMIHSIQNSQDMR	17	Oxidation (M)	_EILLEMIHSIQNSQDM(Oxidation (M))R_	EILLEMIHSIQNSQDM(1)R	EILLEM(-36)IHSIQNSQDM(36)R	0	1	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	691.674963	2072.00306	0.079023	5.4658E-05	-2.049	-0.0014172	-1.9699	-0.0013626	692.008102210566	16.448	0.13301	16.448	16.395	16.528	0	570	28	0.942920803299286	0.0182196558414446	0.942920803299286	570.267723076016	0	11.0190395795428						401	16	5	NaN	NaN	NaN	1.0193E-06	1	32894	72.846	45.468	2	126020			4514	455	3824	3914	4514	4514	66	
EILNLTSELLQK	12	Unmodified	_EILNLTSELLQK_			0	0	0	Q86TU7	Q86TU7	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.903399	1399.79225	0.90758	0.00063613	1.7893	0.0012541	2.6969	0.0018902	700.904677622176	15.748	0.088673	15.748	15.712	15.801	0	441	28	1.02971785871157	0.0181141482765854	1.02971785871157	416.500228904374	0	7.32680980501362						213	11	3	NaN	NaN	NaN	4.3029E-08	1	15453	153.33	92.439	1	59239			4515	2159	3825	3915	4515	4515		
EILQEEEDLAEIVQLVGK	18	Unmodified	_EILQEEEDLAEIVQLVGK_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.700049	2054.07832	-0.32763	-0.00022466	-1.1305	-0.00077516	-1.4581	-0.00099982	685.698850952483	20.013	0.017737	20.013	20.013	20.031	0	564	13	0.946969335010767	0.0080959424177417	0.946969335010767	572.749461637433	0	4.89661754586427						27	3	3	NaN	NaN	NaN	0.013345	1	32603	13.859	13.34	1	8088.8			4516	1006	3826	3916	4516	4516		
EILQEEEDLAEIVQLVGK	18	Unmodified	_EILQEEEDLAEIVQLVGK_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.04643	2054.07832	0.75714	0.00077838	1.3806	0.0014194	2.1378	0.0021977	1028.54983723392	20.013	0.035449	20.013	20.004	20.04	0	132	46	1.23554629282893	0.0297613419787592	1.23554629282893	498.193387232238	0	12.0002818631968						166	5	5	NaN	NaN	NaN	9.3443E-20	1	32605	173.54	157.25	1	78611			4517	1006	3826	3916	4517	4517		
EILSEVER	8	Unmodified	_EILSEVER_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.761289	973.508025	0.66558	0.00032464	1.6856	0.00082218	2.3512	0.0011468	487.762055982926	6.8441	0.22166	6.8441	6.7377	6.9594	0	684	85	0.86578508874114	0.0570501934347132	0.86578508874114	351.688588397266	0	23.1742290988383						696	26	4	NaN	NaN	NaN	0.00067072	1	3712	101.41	11.103	1	231850			4518	1129	3827	3917	4518	4518		
EILSVDCSTNNPSQAK	16	Unmodified	_EILSVDCSTNNPSQAK_			0	0	0	P10909	P10909	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.91744	1761.82033	3.0542	0.0026935	-3.1996	-0.0028218	-0.14542	-0.00012825	882.415610909133	6.8974	0.070934	6.8974	6.8619	6.9328	0	351	46	1.08996939197032	0.0300738688612157	1.08996939197032	439.983450465016	0	12.1397946473257						223	9	4	NaN	NaN	NaN	3.2102E-12	1	26187	108.5	92.208	1	39429			4519	636	3828	3918	4519	4519		
EILTLLQGVHQGAGFQDIPK	20	Unmodified	_EILTLLQGVHQGAGFQDIPK_			0	0	0	Q15631	Q15631	Q15631	TSN	Translin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.063544	2163.1688	1.369	0.00098847	-1.2303	-0.00088839	0.1386	0.00010008	722.395240003988	15.402	0.13313	15.402	15.358	15.491	0	447	58	1.02569221487577	0.0382726935815298	1.02569221487577	620.153020789744	0	23.1403984490812						616	16	4	NaN	NaN	NaN	1.0553E-07	1	34227	120.75	105.22	1	206250			4520	1857	3829	3919	4520	4520		
EILVEESNVQR	11	Unmodified	_EILVEESNVQR_			0	0	0	P60510	P60510	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.346249	1314.67794	1.5047	0.00099063	-2.2559	-0.0014852	-0.75116	-0.00049452	658.846336158996	6.7023	0.16848	6.7023	6.6668	6.8353	0	522	40	0.975277694896658	0.0262445464858834	0.975277694896658	394.730014395687	0	10.6221133389898						270	20	2	NaN	NaN	NaN	0.00016792	1	12800	90.263	64.406	1	110560			4521	1306	3830	3920	4521	4521		
EILVGDVGQTVDDPYATFVK	20	Unmodified	_EILVGDVGQTVDDPYATFVK_			0	0	0	P23528	P23528	P23528	CFL1	Cofilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.703682	2165.08922	0.74612	0.00053922	-1.8968	-0.0013709	-1.1507	-0.00083164	723.03652588858	16.12	0.13301	16.12	16.076	16.209	0	549	49	0.957085760909907	0.0323568915973725	0.957085760909907	578.668984406875	0	19.5634815227154						453	16	5	NaN	NaN	NaN	0.0002428	1	34250	71.912	64.336	1	182010			4522	823	3831	3921	4522	4522		
EILVGDVGQTVDDPYATFVK	20	Unmodified	_EILVGDVGQTVDDPYATFVK_			0	0	0	P23528	P23528	P23528	CFL1	Cofilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.703682	2165.08922	0.76123	0.00055014	-1.7442	-0.0012606	-0.98301	-0.00071042	722.700665616485	16.12	0.15962	16.12	16.067	16.227	0	495	64	0.993446994398923	0.0423891882940376	0.993446994398923	600.653552932177	0	25.6291646139912						408	19	4	NaN	NaN	NaN	0.021047	1	34251	43.518	38.702	1	85677			4523	823	3831	3921	4523	4523		
EILVGDVGQTVDDPYATFVK	20	Unmodified	_EILVGDVGQTVDDPYATFVK_			0	0	0	P23528	P23528	P23528	CFL1	Cofilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1083.55188	2165.08922	1.5486	0.001678	1.1741	0.0012722	2.7227	0.0029502	1084.05500538868	16.12	0.26601	16.12	16.058	16.324	0	111	172	1.24942920585258	0.113109007294191	1.24942920585258	503.617744849529	0	45.5917813581115						4389	31	7	NaN	NaN	NaN	2.4026E-124	1	34252	324.49	293.45	1	6385000			4524	823	3831	3921	4524	4524		
EILVGDVGVTITDPFK	16	Unmodified	_EILVGDVGVTITDPFK_			0	0	0	P60981	P60981	P60981	DSTN	Destrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.966728	1701.9189	1.3876	0.0011822	-0.023954	-2.0408E-05	1.3637	0.0011618	851.967495558407	17.858	0.25714	17.858	17.805	18.062	0	312	40	1.11600111266355	0.0260102225300953	1.11600111266355	450.615335402766	0	10.502323892246						428	30	4	NaN	NaN	NaN	0.0031017	1	24567	76.563	65.208	1	158910			4525	1317	3832	3922	4525	4525		
EIMDAAEDYAK	11	Unmodified	_EIMDAAEDYAK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.279186	1254.54382	1.5017	0.00094347	0.92172	0.0005791	2.4234	0.0015226	628.279832038593	8.1745	0.10641	8.1745	8.1302	8.2366	0	543	34	0.961130371139249	0.0222438199941358	0.961130371139249	389.197931854925	0	9.00736153827842						276	13	3	NaN	NaN	NaN	0.00073716	1	11049	67.881	31.67	1	78472			4526	705	3833	3923	4526	4526		
EINNAHAILTDATK	14	Unmodified	_EINNAHAILTDATK_			0	0	0	Q9H3Z4	Q9H3Z4	Q9H3Z4	DNAJC5	DnaJ homolog subfamily C member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.896637	1509.77872	1.9222	0.001453	-0.53152	-0.00040177	1.3907	0.0010512	755.896019955252	6.7821	0.062061	6.7821	6.7644	6.8264	0	402	34	1.05585747106793	0.0220998283327687	1.05585747106793	426.768707820895	0	8.93256470601091						137	8	3	NaN	NaN	NaN	0.00021328	1	18800	86.135	67.627	1	27879			4527	2888	3834	3924	4527	4527		
EINSDQATQGNISSDR	16	Unmodified	_EINSDQATQGNISSDR_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.898093	1733.78163	3.1192	0.0027072	-2.2499	-0.0019526	0.86939	0.00075454	867.896069684162	4.2194	0.097597	4.2194	4.1928	4.2904	0	372	64	1.07593298845566	0.0421615106260795	1.07593298845566	434.372267201976	0	17.0213118807678						287	12	4	NaN	NaN	NaN	1.6201E-33	1	25430	219.16	197.8	1	66056			4528	1921	3835	3925	4528	4528		
EINTNQEALK	10	Unmodified	_EINTNQEALK_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.30131	1158.58807	1.9798	0.0011489	-4.2481	-0.0024652	-2.2683	-0.0013163	580.79933292003	4.0332	0.28375	4.0332	3.9356	4.2194	0	612	52	0.914549654013882	0.0344865119804736	0.914549654013882	370.669371803895	0	13.9774736947368						456	33	4	NaN	NaN	NaN	0.0045073	1	8320	49.16	26.774	1	104150			4529	2454	3836	3926	4529	4529		
EIPIEGLEFMGHGK	14	Unmodified	_EIPIEGLEFMGHGK_			0	0	0	O43715	O43715	O43715	TRIAP1	TP53-regulated inhibitor of apoptosis 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.892509	1555.77046	2.1569	0.00168	0.91299	0.00071112	3.0699	0.0023911	778.893013309827	13.62	0.13298	13.62	13.575	13.708	0	348	31	1.09197348738011	0.0200423371753535	1.09197348738011	441.247942625259	0	8.09876809852256						372	16	4	NaN	NaN	NaN	1.2049E-08	1	20232	129.69	113.03	1	120810			4530	223	3837	3927	4530	4530		
EIPSHVLSK	9	Unmodified	_EIPSHVLSK_			0	0	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.287474	1008.5604	1.3146	0.00066427	0.7203	0.00036396	2.0349	0.0010282	505.288038917288	4.2549	0.28373	4.2549	4.2017	4.4854	0	681	46	0.867820189810857	0.0305265242845556	0.867820189810857	352.344566520221	0	12.3941054756458						586	33	3	NaN	NaN	NaN	0.0095223	1	4483	72.038	31.835	1	259730			4531	1835	3838	3928	4531	4531		
EIPYTFEDR	9	Unmodified	_EIPYTFEDR_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.277303	1168.54005	0.73577	0.00043063	5.1702	0.003026	5.9059	0.0034566	585.280225682094	9.576	0.25714	9.576	9.4696	9.7268	0	606	73	0.918606045818476	0.0487239987512836	0.918606045818476	372.276093983665	0	19.7459836248207						612	30	3	NaN	NaN	NaN	0.02502	1	8564	34.781	9.5271	1	135370			4532	954	3839	3929	4532	4532		
EIQGFFNIPVDNLR	14	Unmodified	_EIQGFFNIPVDNLR_			0	0	0	O60256	O60256	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.435929	1660.85731	2.2018	0.0018307	7.2015	0.0059876	9.4033	0.0078183	831.44240119096	17.424	0.25717	17.424	17.335	17.592	0	342	76	1.09598084995137	0.0500886186558791	1.09598084995137	442.619956500096	0	20.2286583854079						1051	30	5	NaN	NaN	NaN	5.8392E-05	1	23377	106.11	85.777	1	351150			4533	250	3840	3930	4533	4533		
EIQNQTLPVDFFAHLR	16	Unmodified	_EIQNQTLPVDFFAHLR_			0	0	0	Q9UBK8	Q9UBK8	Q9UBK8	MTRR	Methionine synthase reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.339008	1926.9952	0.047402	3.0496E-05	-1.1082	-0.00071295	-1.0608	-0.00068245	643.672864923203	16.44	0.11526	16.44	16.395	16.51	0	585	28	0.932794566565362	0.0182322776363114	0.932794566565362	564.425715578174	0	11.0321894234296						279	14	4	NaN	NaN	NaN	0.00011085	1	30223	77.157	67.415	1	81772			4534	3176	3841	3931	4534	4534		
EIQTAVR	7	Unmodified	_EIQTAVR_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;Q96A08;P33778;Q16778;P23527;P06899	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BA;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-A;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.732335	815.450116	-0.50003	-0.00020438	0.10328	4.2214E-05	-0.39675	-0.00016216	408.732492304895	2.8538	0.39016	2.8538	2.8094	3.1996	0	852	64	0.751366682244005	0.0430473832980309	0.751366682244005	306.033510708339	0	17.5333058396456						905	45	3	NaN	NaN	NaN	0.014501	1	1162	51.456	13.848	1	354770			4535	283;550	3842	3932	4535	4535		
EIQTLLSHK	9	Unmodified	_EIQTLLSHK_			0	0	0	P78316	P78316	P78316	NOP14	Nucleolar protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.806031	1067.59751	0.72699	0.0003888	0.59708	0.00031932	1.3241	0.00070812	534.806505431356	5.913	0.15079	5.913	5.8775	6.0283	0	657	28	0.884090832094921	0.0182930452073933	0.884090832094921	358.683334414599	0	7.42164742963917						210	18	3	NaN	NaN	NaN	0.009948	1	5905	57.032	44.205	1	58102			4536	1455	3843	3933	4536	4536		
EIQVQHPAAK	10	Unmodified	_EIQVQHPAAK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	374.208495	1119.60366	0.1332	4.9845E-05	1.4009	0.00052424	1.5341	0.00057408	374.208947634745	2.6409	0.23056	2.6409	2.5966	2.8272	0	864	25	0.743159753061487	0.0164184368228193	0.743159753061487	451.986935954091	0	9.9856308446885						242	27	3	NaN	NaN	NaN	0.044193	1	7257	22.386	11.684	1	50915			4537	1129	3844	3934	4537	4537		
EIQVQHPAAK	10	Unmodified	_EIQVQHPAAK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.809105	1119.60366	1.7844	0.0010007	-0.048043	-2.6943E-05	1.7363	0.00097376	560.808973393193	2.6321	0.25716	2.6321	2.57	2.8272	0	660	34	0.882057989648486	0.0223612701402726	0.882057989648486	357.64679290419	0	9.06679225718455						351	30	3	NaN	NaN	NaN	0.00063673	1	7259	67.464	26.439	1	96060			4538	1129	3844	3934	4538	4538		
EIRPALELLEPIEQK	15	Unmodified	_EIRPALELLEPIEQK_			0	0	1	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.340126	1776.99855	0.88501	0.00052511	-0.51669	-0.00030657	0.36832	0.00021854	593.33966126235	14.56	0.23054	14.56	14.489	14.719	0	603	157	0.920633820089869	0.105700817017526	0.920633820089869	557.403052437105	0	63.997168868849						1267	27	3	NaN	NaN	NaN	3.5473E-07	1	26608	138	129.62	1	680930			4539	1161	3845	3935	4539	4539		
EISDAQWEDVVQK	13	Unmodified	_EISDAQWEDVVQK_			0	0	0	Q16626	Q16626	Q16626	MEA1	Male-enhanced antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.872827	1545.7311	2.2568	0.0017465	0.94214	0.0007291	3.199	0.0024756	773.873833738513	10.871	0.13299	10.871	10.8	10.933	0	423	37	1.04178812298108	0.0241371995197355	1.04178812298108	420.993006457441	0	9.75399120907542						378	16	4	NaN	NaN	NaN	6.5431E-08	1	19905	144.27	108.42	1	109560			4540	1893	3846	3936	4540	4540		
EISDDEAEEEK	11	Unmodified	_EISDDEAEEEK_			0	0	0	P08238;Q58FF7	P08238	P08238	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.270069	1292.52559	2.5439	0.0016466	-0.47627	-0.00030828	2.0677	0.0013383	647.269587906437	2.9513	0.25714	2.9513	2.9247	3.1818	0	591	34	0.928742107665821	0.0222931596374992	0.928742107665821	375.962373835837	0	9.02445269621745						488	30	3	NaN	NaN	NaN	0.00029332	1	12145	87.895	80.745	1	134320			4541	579	3847	3937	4541	4541		
EISDGDVIISGNK	13	Unmodified	_EISDGDVIISGNK_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.843539	1345.67252	1.6517	0.001113	0.58793	0.00039617	2.2396	0.0015092	673.843941860871	7.6422	0.079781	7.6422	7.5979	7.6777	0	540	46	0.963152256458504	0.0303115059679868	0.963152256458504	389.729006098548	0	12.2652187284396						157	10	2	NaN	NaN	NaN	0.069702	1	13776	29.317	26.439	1	40647			4542	483	3848	3938	4542	4542		
EISDHVLR	8	Unmodified	_EISDHVLR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.761623	967.508694	0.87259	0.000423	0.93197	0.00045178	1.8046	0.00087478	484.76229273808	4.1751	0.14189	4.1751	4.1307	4.2726	0	702	22	0.853568545818287	0.0142595640059772	0.853568545818287	346.756082329409	0	5.79284531355108						151	17	2	NaN	NaN	NaN	0.062097	1	3582	40.203	25.668	1	33202			4543	835	3849	3939	4543	4543		
EISEASENIYSDVR	14	Unmodified	_EISEASENIYSDVR_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.378474	1610.74239	2.1464	0.0017308	-0.020323	-1.6388E-05	2.126	0.0017144	806.879792241276	8.7245	0.15983	8.7245	8.6712	8.831	0	381	49	1.06991323971056	0.0321296946517993	1.06991323971056	432.20359466442	0	12.9791547656093						407	19	3	NaN	NaN	NaN	6.0543E-06	1	21910	138.71	100.61	1	102440			4544	2401	3850	3940	4544	4544		
EISEGDEVEVYSR	13	Unmodified	_EISEGDEVEVYSR_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.346642	1510.67873	1.9636	0.0014852	-0.023748	-1.7961E-05	1.9398	0.0014672	756.346939070914	7.3674	0.17734	7.3674	7.3319	7.5092	0	492	64	0.995464410099171	0.0423306339100051	0.995464410099171	402.356161137947	0	17.1095934578603						547	21	3	NaN	NaN	NaN	8.8182E-17	1	18822	180.81	158.77	1	131840			4545	1178	3851	3941	4545	4545		
EISESTPVEEVEALFK	16	Unmodified	_EISESTPVEEVEALFK_			0	0	0	Q92615	Q92615	Q92615	LARP4B	La-related protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.954014	1805.89348	1.1689	0.0010567	0.58918	0.00053259	1.7581	0.0015893	904.456049475724	19.463	0.11527	19.463	19.41	19.525	0	312	31	1.11600111266355	0.020009239153943	1.11600111266355	450.405700567217	0	8.07550752117015						203	14	3	NaN	NaN	NaN	0.0042895	1	27376	34.779	23.808	1	35563			4546	2419	3852	3942	4546	4546		
EISEVFPDQFIHLGGDEVEFK	21	Unmodified	_EISEVFPDQFIHLGGDEVEFK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	812.397029	2434.16926	1.0363	0.00084189	-0.59201	-0.00048095	0.44429	0.00036094	812.730891310993	17.61	0.17733	17.61	17.548	17.725	0	486	64	0.999498404980629	0.0423833273901605	0.999498404980629	603.886643556792	0	25.6075699499577						786	21	4	NaN	NaN	NaN	6.4107E-06	1	36501	96.27	64.47	1	192590			4547	562	3853	3943	4547	4547		
EISFAYEVLSNPEK	14	Unmodified	_EISFAYEVLSNPEK_			0	0	0	O60884	O60884	O60884	DNAJA2	DnaJ homolog subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.406503	1624.79845	2.1056	0.0017127	-3.0636	-0.0024919	-0.95801	-0.00077925	813.904111094979	14.365	0.133	14.365	14.311	14.444	0	363	67	1.08195024817156	0.0441174739341266	1.08195024817156	437.033853420097	0	17.8204401442448						256	16	2	NaN	NaN	NaN	0.00022089	1	22330	86.838	80.091	1	85223			4548	291	3854	3944	4548	4548		
EISFAYEVLSNPEK	14	Unmodified	_EISFAYEVLSNPEK_			0	0	0	O60884	O60884	O60884	DNAJA2	DnaJ homolog subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.406503	1624.79845	2.2462	0.0018271	0.97638	0.00079419	3.2226	0.0026213	813.407293959813	14.365	0.14186	14.365	14.311	14.453	0	255	76	1.15396378101328	0.0499302854607733	1.15396378101328	466.12237626506	0	20.1684174923864						765	17	5	NaN	NaN	NaN	1.9915E-11	1	22331	139.78	113.2	1	268280			4549	291	3854	3944	4549	4549		
EISGLWNELDSLK	13	Unmodified	_EISGLWNELDSLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.388113	1502.76167	0.53817	0.00040491	2.8545	0.0021477	3.3927	0.0025526	752.391123984404	17.326	0.15073	17.326	17.291	17.442	0	417	43	1.04580932352505	0.0281445259800737	1.04580932352505	422.725248137867	0	11.3762628244195						411	18	4	NaN	NaN	NaN	4.0805E-05	1	18599	106	77.907	1	146810			4550	2167	3855	3945	4550	4550		
EISLWFK	7	Unmodified	_EISLWFK_			0	0	0	P22392	P22392	P22392	NME2	Nucleoside diphosphate kinase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.755278	921.496004	-1.5588	-0.00071978	-1.2253	-0.00056578	-2.7841	-0.0012856	461.754673893849	14.4	0.11526	14.4	14.365	14.48	0	756	28	0.816857749704129	0.0183796540051641	0.816857749704129	332.074667932475	0	7.47182419789652						196	14	3	NaN	NaN	NaN	0.065843	1	2734	27.705	7.0461	1	59759			4551	805	3856	3946	4551	4551		
EISLWFKPEELVDYK	15	Unmodified	_EISLWFKPEELVDYK_			0	0	1	P22392	P22392	P22392	NME2	Nucleoside diphosphate kinase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.664499	1894.97167	-0.4427	-0.00028008	-0.66658	-0.00042172	-1.1093	-0.0007018	632.998552021155	17.176	0.31921	17.176	17.034	17.353	0	690	106	0.86171403876517	0.0712880180128582	0.86171403876517	521.478445973697	0	43.1409530047369						2831	37	6	NaN	NaN	NaN	0.00010892	1	29498	104.04	92.559	1	2034500			4552	805	3857	3947	4552	4552		
EISLWFKPEELVDYK	15	Unmodified	_EISLWFKPEELVDYK_			0	0	1	P22392	P22392	P22392	NME2	Nucleoside diphosphate kinase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.49311	1894.97167	1.5964	0.0015142	1.3625	0.0012923	2.9589	0.0028065	948.996040900247	17.176	0.32808	17.176	17.034	17.362	0	231	85	1.16991841121525	0.0558412531789176	1.16991841121525	471.996938216726	0	22.5288364333509						1207	38	3	NaN	NaN	NaN	0.068336	1	29499	62.454	40.312	1	1122500			4553	805	3857	3947	4553	4553		
EITALAPSTMK	11	Oxidation (M)	_EITALAPSTM(Oxidation (M))K_	EITALAPSTM(1)K	EITALAPSTM(140)K	0	1	0	P60709;P63261;P68133;P68032;P62736;P63267	P60709;P63261;P68133	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.310289	1176.60602	2.4725	0.0014571	-0.15301	-9.0171E-05	2.3195	0.0013669	589.310432781634	6.0727	0.42573	6.0727	5.9485	6.3742	0	606	97	0.918606045818476	0.0648933532391801	0.918606045818476	372.246343058991	0	26.2967063433562						2191	49	5	NaN	NaN	NaN	5.3089E-07	1	8791	139.02	104.09	1	2871800			4554	1310;1436;1444	3858	3948	4554	4554	464	
EITGIGPSTTTETETIAK	18	Unmodified	_EITGIGPSTTTETETIAK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.975478	1847.9364	2.2156	0.0020494	-0.5852	-0.0005413	1.6304	0.0015081	924.975182417699	9.2745	0.24832	9.2745	9.1592	9.4076	0	255	88	1.15396378101328	0.0578713761227716	1.15396378101328	465.646259955546	0	23.3521972642737						1173	29	5	NaN	NaN	NaN	4.0052E-19	1	28435	167.59	158.33	1	503300			4555	334	3859	3949	4555	4555		
EITYMHSEGILAGELK	16	Unmodified	_EITYMHSEGILAGELK_			0	0	0	Q06210;O94808	Q06210	Q06210	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.953294	1789.89204	1.3678	0.0012255	0.13707	0.00012281	1.5049	0.0013483	895.95385568288	11.882	0.14187	11.882	11.846	11.988	0	258	37	1.15196821829984	0.0239516960095993	1.15196821829984	464.953301113495	0	9.66729806432176						441	17	5	NaN	NaN	NaN	9.416E-09	1	26975	106.47	90.85	1	110590			4556	1558	3860	3950	4556	4556		
EIVDSYLPVILDIIK	15	Unmodified	_EIVDSYLPVILDIIK_			0	0	0	P07602	P07602	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.502946	1728.99134	1.5799	0.0013674	-1.4507	-0.0012556	0.12912	0.00011175	865.501267240956	20.155	0.044324	20.155	20.146	20.19	0	309	40	1.11800162319566	0.0260102225300953	1.11800162319566	451.365999546321	0	10.500995568469						147	6	3	NaN	NaN	NaN	0.0029888	1	25309	52.837	50.701	1	94110			4557	561	3861	3951	4557	4557		
EIVEMNEIEEGK	12	Unmodified	_EIVEMNEIEEGK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.337232	1418.65991	1.3138	0.00093323	2.218	0.0015755	3.5318	0.0025088	710.33712219262	9.4253	0.25712	9.4253	9.3189	9.576	0	477	52	1.0055473068722	0.0342676498063071	1.0055473068722	406.670805407608	0	13.858773874602						581	30	4	NaN	NaN	NaN	5.4424E-05	1	16048	74.849	51.951	1	176890			4558	2866	3862	3952	4558	4558		
EIVHIQAGQCGNQIGTK	17	Unmodified	_EIVHIQAGQCGNQIGTK_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.970342	1851.92613	2.2004	0.0020397	-1.6743	-0.001552	0.52611	0.00048769	927.470017728175	6.3033	0.062095	6.3033	6.2855	6.3476	0	288	46	1.13199748998575	0.0299787708874888	1.13199748998575	456.775117067685	0	12.0968082551582						196	8	3	NaN	NaN	NaN	0.0001756	1	28541	57.62	50.044	1	38494			4559	2745	3863	3953	4559	4559		
EIVHIQAGQCGNQIGTK	17	Unmodified	_EIVHIQAGQCGNQIGTK_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.315987	1851.92613	0.08394	5.1901E-05	0.81596	0.00050452	0.8999	0.00055642	618.316776838551	6.3033	0.062065	6.3033	6.2767	6.3387	8.8818E-16	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	517.869051265816	0	12.3271935404559						170	8	4	NaN	NaN	NaN	4.2658E-07	1	28542	130.65	123.08	1	44382			4560	2745	3863	3953	4560	4560		
EIVHLQAGQCGNQIGAK	17	Unmodified	_EIVHLQAGQCGNQIGAK_			0	0	0	P04350;P68371	P04350;P68371	P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.312465	1821.91557	0.52169	0.00031735	2.0726	0.0012608	2.5943	0.0015781	608.313928508137	6.3299	0.37249	6.3299	6.2855	6.658	0	702	109	0.853568545818287	0.0733706789193608	0.853568545818287	516.699435933064	0	44.4142284733748						1391	43	7	NaN	NaN	NaN	1.1763E-34	1	27771	293.8	0	1	2909800			4561	1449;512	3864	3954	4561	4561		
EIVHLQAGQCGNQIGAK	17	Unmodified	_EIVHLQAGQCGNQIGAK_			0	0	0	P04350;P68371	P04350;P68371	P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.965059	1821.91557	2.88	0.0026264	0.078933	7.1984E-05	2.9589	0.0026984	911.965736346651	6.3299	0.15961	6.3299	6.2855	6.4451	0	309	133	1.11800162319566	0.0880529659753071	1.11800162319566	451.182845743288	0	35.5348211850701						1393	19	6	NaN	NaN	NaN	5.3687E-45	1	27772	248.91	0	1	2244800			4562	1449;512	3864	3954	4562	4562		
EIVLADVIDNDSWR	14	Unmodified	_EIVLADVIDNDSWR_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.915027	1643.8155	0.93245	0.00076733	-0.16199	-0.0001333	0.77046	0.00063403	822.914916054987	17.034	0.29265	17.034	16.91	17.202	0	399	94	1.0578662689527	0.0622127176050391	1.0578662689527	427.263770801088	0	25.1272217442267						1769	34	6	NaN	NaN	NaN	1.7188E-33	1	22862	208.63	182.05	1	962180			4563	802	3865	3955	4563	4563		
EIVQQLIDEYHAATRPDYISWGTQEQ	26	Unmodified	_EIVQQLIDEYHAATRPDYISWGTQEQ_			0	0	1	P23258	P23258	P23258	TUBG1	Tubulin gamma-1 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1030.83162	3089.47304	0.98947	0.00102	0.79964	0.0008243	1.7891	0.0018443	1031.1662690236	18.16	0.062054	18.16	18.133	18.195	0	369	34	1.07793901817685	0.022069372225481	1.07793901817685	650.495054360813	0	13.3180237874718						220	8	5	NaN	NaN	NaN	1.8693E-09	1	38345	89.489	87.24	1	43696			4564	815	3866	3956	4564	4564		
EIVTNFLAGFEA	12	Unmodified	_EIVTNFLAGFEA_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.834985	1309.65542	0.63236	0.00041472	-0.98362	-0.00064509	-0.35126	-0.00023037	655.834161382352	19.862	0.13301	19.862	19.836	19.969	0	585	64	0.932794566565362	0.0425419995198165	0.932794566565362	377.550614638476	0	17.2189661500682						487	16	4	NaN	NaN	NaN	1.5109E-16	1	12642	171.34	159.98	1	244830			4565	840	3867	3957	4565	4565		
EIVVIHQDPEALK	13	Unmodified	_EIVVIHQDPEALK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.914298	1489.81404	2.0749	0.0015477	0.33923	0.00025304	2.4141	0.0018007	745.914652643895	8.1213	0.17746	8.1213	8.0591	8.2366	0	405	43	1.05384839605172	0.028132878019673	1.05384839605172	426.008503591519	0	11.3724567136842						523	21	3	NaN	NaN	NaN	7.7034E-24	1	18231	216.04	157.12	1	260000			4566	1036	3868	3958	4566	4566		
EIVVLETLEDIDK	13	Unmodified	_EIVVLETLEDIDK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.411254	1514.80796	1.0274	0.00077916	0.63156	0.00047898	1.6589	0.0012581	758.412092532487	18.08	0.2926	18.08	17.991	18.284	0	450	106	1.02367897599655	0.0703759678912108	1.02367897599655	413.749947013754	0	28.4445159750241						1489	34	5	NaN	NaN	NaN	6.3486E-24	1	18978	200.06	173.11	1	1202800			4567	1831	3869	3959	4567	4567		
EIYENMAPGENK	12	Unmodified	_EIYENMAPGENK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.816467	1393.61838	2.1754	0.001518	-0.018469	-1.2888E-05	2.1569	0.0015051	697.816413442018	6.0638	0.23054	6.0638	6.0106	6.2411	0	507	37	0.985374541851584	0.0242274096445863	0.985374541851584	398.581524806529	0	9.79992629006455						619	27	4	NaN	NaN	NaN	5.3544E-11	1	15257	160.98	141.65	1	245010			4568	1642	3870	3960	4568	4568		
EIYNQVNVVLK	11	Unmodified	_EIYNQVNVVLK_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.871902	1317.72925	1.6074	0.0010607	-1.0523	-0.00069435	0.55513	0.00036632	659.872632257256	10.897	0.14189	10.897	10.826	10.968	0	480	52	1.00353128488872	0.0342723855002213	1.00353128488872	406.15547324269	0	13.8709347297946						356	17	3	NaN	NaN	NaN	1.3258E-05	1	12913	125.98	101.86	1	110050			4569	3057	3871	3961	4569	4569		
EIYPYVIQELRPTLNELGISTPEELGLDK	29	Unmodified	_EIYPYVIQELRPTLNELGISTPEELGLDK_			0	0	1	P20674	P20674	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1110.58869	3328.74424	1.6457	0.0018277	-0.071964	-7.9923E-05	1.5738	0.0017478	1110.92321829171	19.995	0.0532	19.995	19.969	20.022	0	321	118	1.10999792833052	0.0780307925576129	1.10999792833052	669.625428055883	0	47.0734237734292						453	7	5	NaN	NaN	NaN	1.7304E-21	1	38564	124.59	123.63	1	98995			4570	783	3872	3962	4570	4570		
EIYTHFTCATDTK	13	Unmodified	_EIYTHFTCATDTK_			0	0	0	P04899;P08754;P63096	P04899;P08754;P63096	P04899	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.576696	1585.70826	-1.177	-0.00062331	1.2136	0.00064272	0.036652	1.941E-05	529.577207849974	6.4008	0.079788	6.4008	6.3653	6.4451	0	774	43	0.804600385996946	0.0286164420123584	0.804600385996946	487.604118467253	0	17.3421430364044						224	10	3	NaN	NaN	NaN	0.0024818	1	21113	50.09	49.038	1	48203			4571	520;590;1425	3873	3963	4571	4571		
EIYTHFTCATDTK	13	Unmodified	_EIYTHFTCATDTK_			0	0	0	P04899;P08754;P63096	P04899;P08754;P63096	P04899	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.861405	1585.70826	2.4766	0.0019661	-1.0651	-0.00084551	1.4116	0.0011206	793.860722994834	6.3919	0.19506	6.3919	6.3476	6.5427	0	399	55	1.0578662689527	0.0361558820177341	1.0578662689527	427.394603809555	0	14.6075447567234						718	23	5	NaN	NaN	NaN	1.3031E-11	1	21114	151.66	137.87	1	272600			4572	520;590;1425	3873	3963	4572	4572		
EKEDDVPQFTSAGENFDK	18	Unmodified	_EKEDDVPQFTSAGENFDK_			0	0	1	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.976241	2054.90689	0.1072	7.3536E-05	0.41494	0.00028464	0.52214	0.00035818	686.310812248059	8.9996	0.11529	8.9996	8.9287	9.044	0	669	31	0.875957769340875	0.0203411270160542	0.875957769340875	529.798547979131	0	12.3027615423442						321	14	4	NaN	NaN	NaN	0.00016415	1	32613	66.509	58.933	1	73114			4573	880	3874	3964	4573	4573		
EKPSYDTETDPSEGLMNVLK	20	Unmodified	_EKPSYDTETDPSEGLMNVLK_			0	0	1	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	751.691224	2252.05184	1.0358	0.00077861	-0.18196	-0.00013678	0.85386	0.00064184	752.025563904894	13.008	0.22166	13.008	12.928	13.15	0	552	115	0.955063035883597	0.0769542006227255	0.955063035883597	577.30396533873	0	46.5162648954056						2172	26	6	NaN	NaN	NaN	9.4372E-29	1	35206	224.97	192.37	1	1243200			4574	2950	3875	3965	4574	4574		
EKPSYDTETDPSEGLMNVLK	20	Unmodified	_EKPSYDTETDPSEGLMNVLK_			0	0	1	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.0332	2252.05184	1.4214	0.0016019	4.3861	0.0049433	5.8075	0.0065452	1127.54423444516	13.017	0.18623	13.017	12.937	13.123	0	96	106	1.2593374219024	0.0693481083373293	1.2593374219024	507.486544741777	0	27.9458318893799						1449	22	5	NaN	NaN	NaN	0.022505	1	35207	69.201	66.295	1	577410			4575	2950	3875	3965	4575	4575		
EKPSYDTETDPSEGLMNVLK	20	Oxidation (M)	_EKPSYDTETDPSEGLM(Oxidation (M))NVLK_	EKPSYDTETDPSEGLM(1)NVLK	EKPSYDTETDPSEGLM(100)NVLK	0	1	1	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.022863	2268.04676	1.5995	0.0012109	0.017727	1.342E-05	1.6172	0.0012243	757.357347532062	10.782	0.18622	10.782	10.684	10.871	0	543	64	0.961130371139249	0.0424831283312966	0.961130371139249	580.946364580042	0	25.6785340481957						1026	22	5	NaN	NaN	NaN	7.8055E-07	1	35352	104.86	96.092	1	288080			4576	2950	3875	3966	4576	4576	628	
ELAAEDEQVFLMK	13	Unmodified	_ELAAEDEQVFLMK_			0	0	0	O43237	O43237	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.876524	1521.7385	2.1246	0.0016187	2.1755	0.0016575	4.3001	0.0032762	761.878591299957	12.972	0.27489	12.972	12.804	13.079	0	414	88	1.04781950764076	0.0582712721750083	1.04781950764076	423.489581265331	0	23.5510758038425						646	32	4	NaN	NaN	NaN	2.9561E-07	1	19178	125.17	116.7	1	151260			4577	190	3876	3967	4577	4577		
ELAAQLNEEAK	11	Unmodified	_ELAAQLNEEAK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.314417	1214.61428	1.4845	0.00090305	1.5967	0.00097128	3.0812	0.0018743	608.315525523768	5.7978	0.15074	5.7978	5.7534	5.9041	0	582	55	0.934820374997243	0.0364418454762743	0.934820374997243	378.679460937969	0	14.7619572375934						345	18	2	NaN	NaN	NaN	1.6941E-05	1	9861	132.39	117.86	1	182020			4578	3430	3877	3968	4578	4578		
ELADESQTLK	10	Unmodified	_ELADESQTLK_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.287868	1132.56118	1.543	0.00087532	-7.9694	-0.0045209	-6.4264	-0.0036456	567.782126861528	4.6273	0.12415	4.6273	4.5918	4.7159	0	615	16	0.912521036363781	0.0101430885428776	0.912521036363781	369.947149423117	0	4.11213171340847						95	15	2	NaN	NaN	NaN	6.4278E-05	1	7600	105.36	76.257	1	32361			4579	3309	3878	3969	4579	4579		
ELADITLDPPPNCSAGPK	18	Unmodified	_ELADITLDPPPNCSAGPK_			0	0	0	P51965	P51965	P51965	UBE2E1	Ubiquitin-conjugating enzyme E2 E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.96439	1893.91423	2.3229	0.002202	-3.1802	-0.0030147	-0.85736	-0.00081275	947.962081036283	11.252	0.19509	11.252	11.146	11.341	0	279	34	1.13799159301878	0.0219723346163216	1.13799159301878	459.118123134013	0	8.86464987246308						387	23	4	NaN	NaN	NaN	4.7307E-05	1	29467	61.042	59.058	1	63333			4580	1202	3879	3970	4580	4580		
ELAEDGYSGVEVR	13	Unmodified	_ELAEDGYSGVEVR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.33862	1422.66269	1.6787	0.0011958	0.088064	6.2731E-05	1.7668	0.0012585	712.34003507612	7.4826	0.23938	7.4826	7.3408	7.5801	0	507	61	0.985374541851584	0.0403455444968032	0.985374541851584	398.501570619564	0	16.3163976402988						464	28	3	NaN	NaN	NaN	0.00048054	1	16166	94.791	73.703	1	135060			4581	819	3880	3971	4581	4581		
ELAEDGYSGVEVR	13	Unmodified	_ELAEDGYSGVEVR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.33862	1422.66269	2.8618	0.0020386	0.5725	0.00040781	3.4343	0.0024464	712.339250095386	7.6511	0.42572	7.6511	7.5713	7.997	0	501	97	0.98941132619024	0.0645707700207963	0.98941132619024	400.134110318162	0	26.1134746802587						1673	49	5	NaN	NaN	NaN	1.3413E-43	1	16167	207.67	187.43	1	1425300			4582	819	3880	3971	4582	4582		
ELAEQLEFIK	10	Unmodified	_ELAEQLEFIK_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.332079	1218.6496	0.18077	0.00011033	5.1333	0.003133	5.314	0.0032433	610.335989959816	13.052	0.097525	13.052	12.981	13.079	1.7764E-15	552	19	0.955063035883597	0.0121355107414761	0.955063035883597	386.865001971459	0	4.91570106949263						82	12	2	NaN	NaN	NaN	0.00016052	1	9988	111.39	36.906	1	47348			4583	570	3881	3972	4583	4583		
ELAEQTLNNIK	11	Unmodified	_ELAEQTLNNIK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.843342	1271.67213	1.7934	0.0011421	-1.4428	-0.00091884	0.35062	0.00022329	636.842551538939	8.1302	0.1862	8.1302	8.077	8.2632	0	525	46	0.973257487423603	0.030307312656189	0.973257487423603	394.050875369237	0	12.2707744215509						545	22	4	NaN	NaN	NaN	6.0708E-23	1	11548	209.86	95.225	1	208000			4584	2404	3882	3973	4584	4584		
ELAETIAADDGTDPR	15	Unmodified	_ELAETIAADDGTDPR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.370649	1572.72674	2.2164	0.0017452	0.27215	0.00021428	2.4886	0.0019594	787.87288624986	7.5979	0.18625	7.5979	7.5447	7.7309	0	399	55	1.0578662689527	0.0361558820177341	1.0578662689527	427.425140671773	0	14.6085884493148						658	22	4	NaN	NaN	NaN	0.00010279	1	20743	64.266	59.738	1	123870			4585	307	3883	3974	4585	4585		
ELAGIVCTLNSENK	14	Unmodified	_ELAGIVCTLNSENK_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.39033	1546.76611	1.878	0.0014543	-3.1789	-0.0024617	-1.3008	-0.0010073	774.387021399578	11.154	0.19507	11.154	11.075	11.27	0	408	37	1.0518390438467	0.0241138939536367	1.0518390438467	425.052136234434	0	9.74451575826623						347	23	3	NaN	NaN	NaN	0.039598	1	19945	54.584	31.686	1	91813			4586	3103	3884	3975	4586	4586		
ELAILLGMLDPAEK	14	Unmodified	_ELAILLGMLDPAEK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.920735	1511.82692	1.7433	0.0013195	-0.12748	-9.6493E-05	1.6158	0.001223	756.9212243748	19.738	0.25714	19.738	19.649	19.907	0	405	94	1.05384839605172	0.0622985841440777	1.05384839605172	425.951412650415	0	25.1802536510085						1468	30	6	NaN	NaN	NaN	3.8481E-17	1	18865	204.34	177.39	1	1429600			4587	893	3885	3976	4587	4587		
ELAILLGMLDPAEK	14	Oxidation (M)	_ELAILLGM(Oxidation (M))LDPAEK_	ELAILLGM(1)LDPAEK	ELAILLGM(100)LDPAEK	0	1	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.918192	1527.82183	0.91174	0.0006974	0.097794	7.4804E-05	1.0095	0.00077221	764.918451203975	17.078	0.39907	17.078	16.83	17.229	0	393	79	1.0618830335572	0.0522035796662552	1.0618830335572	429.15813771074	0	21.0979837923907						1282	46	4	NaN	NaN	NaN	2.3741E-05	1	19362	101.64	84.173	1	717350			4588	893	3885	3977	4588	4588	305	
ELALALQEALEPAVR	15	Unmodified	_ELALALQEALEPAVR_			0	0	0	Q5RKV6	Q5RKV6	Q5RKV6	EXOSC6	Exosome complex component MTR3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.959237	1621.90392	0.94702	0.00076894	1.1027	0.00089538	2.0498	0.0016643	811.960115790041	16.918	0.097556	16.918	16.874	16.972	0	264	40	1.14797626962532	0.0259565934896919	1.14797626962532	463.710826778677	0	10.4848451539783						293	12	3	NaN	NaN	NaN	4.2419E-07	1	22252	114.93	92.037	1	70706			4589	1977	3886	3978	4589	4589		
ELALECDYQR	10	Unmodified	_ELALECDYQR_			0	0	0	Q8NI60	Q8NI60	Q8NI60	ADCK3	Atypical kinase ADCK3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.798077	1295.5816	2.1972	0.0014256	0.5721	0.00037118	2.7693	0.0017967	648.798333380165	7.6777	0.24836	7.6777	7.5447	7.7931	0	558	34	0.951016745717027	0.0222623031474618	0.951016745717027	384.969722138615	0	9.01173685473043						199	29	2	NaN	NaN	NaN	0.048652	1	12223	22.044	0	1	67104			4590	2330	3887	3979	4590	4590		
ELALSALLK	9	Unmodified	_ELALSALLK_			0	0	0	Q9BVI4	Q9BVI4	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.302593	956.590633	-1.2471	-0.00059776	-0.72389	-0.00034696	-1.971	-0.00094472	479.302388133212	15.18	0.053232	15.18	15.154	15.207	0	717	25	0.84338031290707	0.0163091029338942	0.84338031290707	342.671982209118	0	6.62651539866556						76	7	2	NaN	NaN	NaN	0.030074	1	3375	43.734	11.782	1	18941			4591	2764	3888	3980	4591	4591		
ELAPAVSVLQLFCSSPK	17	Unmodified	_ELAPAVSVLQLFCSSPK_			0	0	0	Q9Y678;Q9UBF2	Q9Y678;Q9UBF2	Q9Y678	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.492587	1844.97062	1.5043	0.0013892	-0.10481	-9.6796E-05	1.3995	0.0012924	923.994082317104	19.641	0.10639	19.641	19.587	19.694	0	192	94	1.1958073123591	0.0617436096713875	1.1958073123591	482.536695226491	0	24.9150151987353						853	13	4	NaN	NaN	NaN	6.2681E-10	1	28366	135.13	128.39	1	252680			4592	3452;3173	3889	3981	4592	4592		
ELAPLFEELR	10	Unmodified	_ELAPLFEELR_			0	0	0	Q9UHA4	Q9UHA4	Q9UHA4	LAMTOR3	Ragulator complex protein LAMTOR3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.832246	1215.64994	0.49194	0.00029951	1.5894	0.00096769	2.0814	0.0012672	608.833629117666	15.775	0.1419	15.775	15.686	15.828	0	570	58	0.942920803299286	0.0384743858858818	0.942920803299286	381.957147518347	0	15.5851548020487						627	17	4	NaN	NaN	NaN	0.007163	1	9907	43.272	20.219	1	171030			4593	3210	3890	3982	4593	4593		
ELAPLQELIEK	11	Unmodified	_ELAPLQELIEK_			0	0	0	Q7L9L4;Q9H8S9	Q7L9L4	Q7L9L4	MOB1B;MOB1A	MOB kinase activator 1B;MOB kinase activator 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.866285	1281.71802	0.8236	0.00052864	-0.32091	-0.00020598	0.50269	0.00032266	641.866111828476	15.26	0.1862	15.26	15.171	15.358	0	522	58	0.975277694896658	0.0384052068408169	0.975277694896658	394.835557452241	0	15.5481267862579						425	22	2	NaN	NaN	NaN	0.00071255	1	11824	78.932	56.888	1	162120			4594	2122	3891	3983	4594	4594		
ELAPYDENWFYTR	13	Unmodified	_ELAPYDENWFYTR_			0	0	0	P39019	P39019	P39019	RPS19	40S ribosomal protein S19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.388645	1702.76274	1.6935	0.0014435	1.8481	0.0015753	3.5416	0.0030188	852.390318046492	14.772	0.28377	14.772	14.684	14.967	-1.7764E-15	354	94	1.08796502040166	0.0620842502751899	1.08796502040166	439.293247185284	0	25.0680779170485						2108	33	4	NaN	NaN	NaN	7.4125E-12	1	24577	169.81	148.66	1	1910400			4595	1009	3892	3984	4595	4595		
ELAQIAGRPTEDEDEK	16	Unmodified	_ELAQIAGRPTEDEDEK_			0	0	1	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.958522	1799.85374	0.96191	0.00057807	0.8568	0.0005149	1.8187	0.001093	600.95914260158	5.0972	0.11526	5.0972	5.0529	5.1681	0	708	55	0.849494101904619	0.0366649158136713	0.849494101904619	514.280580543493	0	22.196804130784						475	14	4	NaN	NaN	NaN	7.4496E-05	1	27207	110.58	78.033	1	126450			4596	166	3893	3985	4596	4596		
ELAQQIQK	8	Unmodified	_ELAQQIQK_			0	0	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.271824	956.529095	0.78599	0.0003767	2.0975	0.0010053	2.8835	0.001382	479.273031672967	3.4479	0.32816	3.4479	3.3858	3.714	0	735	46	0.831145085810763	0.0305987056772422	0.831145085810763	337.701008513945	0	12.4325029923581						738	38	3	NaN	NaN	NaN	0.018141	1	3368	63.301	16.466	1	572470			4597	1311;1739	3894	3986	4597	4597		
ELAQQVQQVAAEYCR	15	Unmodified	_ELAQQVQQVAAEYCR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.29307	1791.85738	-0.19757	-0.0001182	-0.12923	-7.732E-05	-0.3268	-0.00019552	598.292872375445	12.307	0.097554	12.307	12.263	12.361	0	630	31	0.902373728295776	0.0203016545312636	0.902373728295776	546.31233318265	0	12.2909653801528						260	12	5	NaN	NaN	NaN	0.00012741	1	27010	86.838	62.907	1	75488			4598	743	3895	3987	4598	4598		
ELAQQVQQVAAEYCR	15	Unmodified	_ELAQQVQQVAAEYCR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.935967	1791.85738	2.3445	0.0021028	0.13222	0.00011859	2.4767	0.0022214	896.936874770881	12.298	0.23054	12.298	12.245	12.476	0	324	55	1.1079963157843	0.0360265591929509	1.1079963157843	447.201747907773	0	14.5407886404263						854	27	6	NaN	NaN	NaN	7.1772E-44	1	27014	285.55	254.51	1	520020			4599	743	3895	3987	4599	4599		
ELAQQVQQVADDYGK	15	Unmodified	_ELAQQVQQVADDYGK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.415391	1690.81623	2.4506	0.0020742	-1.4839	-0.001256	0.96668	0.00081822	846.414132459772	11.199	0.27493	11.199	11.11	11.385	0	354	58	1.08796502040166	0.0380935733737338	1.08796502040166	439.318317797525	0	15.3821163912668						965	32	5	NaN	NaN	NaN	9.7392E-44	1	24228	238.02	224.85	1	432130			4600	2435	3896	3988	4600	4600		
ELASCNPVVLEESK	14	Unmodified	_ELASCNPVVLEESK_			0	0	0	Q9Y232	Q9Y232	Q9Y232	CDYL	Chromodomain Y-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.890163	1573.76577	2.0343	0.0016028	2.0427	0.0016094	4.0769	0.0032122	787.891746854702	8.8753	0.19524	8.8753	8.8044	8.9996	0	399	40	1.0578662689527	0.0261143777195971	1.0578662689527	427.42267107879	0	10.5513120193548						389	23	3	NaN	NaN	NaN	0.01416	1	20781	57.003	37.68	1	111330			4601	3326	3897	3989	4601	4601		
ELASQPDVDGFLVGGASLK	19	Unmodified	_ELASQPDVDGFLVGGASLK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.994005	1901.97346	2.0887	0.0019884	0.013764	1.3103E-05	2.1024	0.0020015	951.994124690375	15.18	0.24826	15.18	15.118	15.367	0	255	64	1.15396378101328	0.0418953176452246	1.15396378101328	465.547680324902	0	16.9019758393828						1128	29	5	NaN	NaN	NaN	9.6462E-11	1	29645	114.35	103.86	1	340540			4602	1303	3898	3990	4602	4602		
ELASQPDVDGFLVGGASLKPEFVDIINAK	29	Unmodified	_ELASQPDVDGFLVGGASLKPEFVDIINAK_			0	0	1	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1010.53252	3028.57572	1.4944	0.0015101	0.28979	0.00029285	1.7842	0.0018029	1010.86740844841	19.064	0.20392	19.064	19.002	19.206	0	366	190	1.07994477139643	0.126171668301158	1.07994477139643	651.764209608951	0	76.1466510542145						2819	24	7	NaN	NaN	NaN	6.862E-15	1	38268	96.204	90.64	1	1612800			4603	1303	3899	3991	4603	4603		
ELAVEGMHR	9	Unmodified	_ELAVEGMHR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.260933	1040.50731	1.5578	0.00081204	-0.66091	-0.00034451	0.89693	0.00046753	521.260850569259	4.5652	0.20394	4.5652	4.5386	4.7425	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.627159137797	0	9.07265142272854						237	24	2	NaN	NaN	NaN	0.00010171	1	5235	94.806	65.705	1	111150			4604	3161	3900	3992	4604	4604		
ELCAQPGQVVAPGAVLVR	18	Unmodified	_ELCAQPGQVVAPGAVLVR_			0	0	0	Q9Y5B0	Q9Y5B0	Q9Y5B0	CTDP1	RNA polymerase II subunit A C-terminal domain phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.509103	1863.00365	1.3792	0.0012861	2.0711	0.0019313	3.4503	0.0032174	933.012966733672	12.369	0.079782	12.369	12.334	12.414	0	246	37	1.1599488233373	0.0239352372746984	1.1599488233373	468.033124476256	0	9.65773977383486						199	10	3	NaN	NaN	NaN	9.364E-06	1	28770	69.327	62.471	1	40719			4605	3427	3901	3993	4605	4605		
ELCQGLGQPGSVLR	14	Unmodified	_ELCQGLGQPGSVLR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.393207	1512.77186	2.5582	0.0019376	-0.57583	-0.00043613	1.9824	0.0015014	757.393124173906	9.7711	0.1862	9.7711	9.7002	9.8864	0	420	64	1.04379886199097	0.042237198940938	1.04379886199097	421.887136421888	0	17.0716136609738						840	22	4	NaN	NaN	NaN	1.3362E-07	1	18895	128.57	120.09	1	287250			4606	678	3902	3994	4606	4606		
ELCSLASDLSQPDLVYK	17	Unmodified	_ELCSLASDLSQPDLVYK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.479873	1936.94519	1.2201	0.0011829	2.0532	0.0019906	3.2734	0.0031735	969.982721493209	14.852	0.16848	14.852	14.772	14.941	0	201	67	1.18983705239708	0.0437969629852113	1.18983705239708	479.957382008652	0	17.6668524920811						639	20	5	NaN	NaN	NaN	8.4816E-27	1	30455	165.72	134.68	1	193630			4607	2013	3903	3995	4607	4607		
ELCSLNQEDFFQR	13	Unmodified	_ELCSLNQEDFFQR_			0	0	0	Q06546	Q06546	Q06546	GABPA	GA-binding protein alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.383036	1684.75152	1.964	0.0016564	2.9417	0.002481	4.9057	0.0041373	843.386546962621	12.653	0.10641	12.653	12.582	12.689	0	354	37	1.08796502040166	0.0240574350512286	1.08796502040166	439.331158422359	0	9.71463292618085						233	13	4	NaN	NaN	NaN	3.8073E-11	1	24038	127.93	119.93	1	59585			4608	1561	3904	3996	4608	4608		
ELDAISTNEEEK	12	Unmodified	_ELDAISTNEEEK_			0	0	0	P49642	P49642	P49642	PRIM1	DNA primase small subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.322636	1376.63072	1.7313	0.0011934	0.73622	0.0005075	2.4675	0.0017009	689.323353414975	5.5671	0.14191	5.5671	5.5139	5.6559	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	396.996320679791	0	7.35236018613153						160	17	2	NaN	NaN	NaN	0.0036765	1	14691	47.334	35.979	1	52206			4609	1140	3905	3997	4609	4609		
ELDALDANDELTPLGR	16	Unmodified	_ELDALDANDELTPLGR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.43378	1740.85301	3.0701	0.0026754	-0.64312	-0.00056044	2.427	0.002115	871.433555331112	13.877	0.28375	13.877	13.788	14.072	0	333	85	1.10198982404297	0.0561031279090141	1.10198982404297	444.877510284902	0	22.6490474946386						1450	33	6	NaN	NaN	NaN	1.4766E-33	1	25629	253.14	223.07	1	598830			4610	1575	3906	3998	4610	4610		
ELDEEHSQELK	11	Unmodified	_ELDEEHSQELK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.817521	1355.62049	2.4757	0.0016806	-1.8544	-0.0012588	0.62133	0.00042177	678.816228786846	3.2351	0.070941	3.2351	3.2084	3.2794	0	525	28	0.973257487423603	0.0181818689972096	0.973257487423603	393.788605250801	0	7.35654533952504						158	9	3	NaN	NaN	NaN	1.5967E-05	1	14057	116.13	68.57	1	34369			4611	2866	3907	3999	4611	4611		
ELDELMASLSDFK	13	Unmodified	_ELDELMASLSDFK_			0	0	0	P49023	P49023	P49023	PXN	Paxillin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.360707	1496.70686	0.30865	0.00023129	1.521	0.0011398	1.8297	0.0013711	749.362231537541	18.275	0.079799	18.275	18.231	18.311	0	426	25	1.03977710643793	0.0160892438574902	1.03977710643793	420.302494174339	0	6.50365283175813						153	10	3	NaN	NaN	NaN	5.4578E-05	1	18438	90.142	72.673	1	34080			4612	1121	3908	4000	4612	4612		
ELDFWQEGWR	10	Unmodified	_ELDFWQEGWR_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.314751	1364.61495	0.4412	0.00030148	-0.25693	-0.00017556	0.18427	0.00012591	683.815699094329	15.739	0.088696	15.739	15.704	15.792	0	552	58	0.955063035883597	0.0384158376205809	0.955063035883597	386.401253431008	0	15.5423540127499						339	11	3	NaN	NaN	NaN	1.5139E-05	1	14320	125.98	94.028	1	79361			4613	1966	3909	4001	4613	4613		
ELDGIIQDGVHNITK	15	Unmodified	_ELDGIIQDGVHNITK_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.436126	1650.8577	1.2423	0.0010267	1.6704	0.0013804	2.9126	0.0024071	826.437189327826	11.917	0.21282	11.917	11.846	12.059	0	249	37	1.15795408347545	0.0239385276642174	1.15795408347545	467.67176119401	0	9.66823603187669						348	25	4	NaN	NaN	NaN	0.001074	1	23085	65.408	49.12	1	91009			4614	2223	3910	4002	4614	4614		
ELDGLWSFR	9	Unmodified	_ELDGLWSFR_			0	0	0	P08236	P08236	P08236	GUSB	Beta-glucuronidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.782556	1121.55056	0.088288	4.9599E-05	-1.0275	-0.00057725	-0.93925	-0.00052765	561.781765600583	15.393	0.142	15.393	15.34	15.482	1.7764E-15	639	34	0.896281965493857	0.0223426636256	0.896281965493857	363.406500031148	0	9.05905675015862						312	17	4	NaN	NaN	NaN	8.0302E-06	1	7301	142.36	105.79	1	72916			4615	577	3911	4003	4615	4615		
ELDPSLVSANDSPSGMQTR	19	Unmodified	_ELDPSLVSANDSPSGMQTR_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.47057	2002.92658	1.6587	0.0016628	-0.81219	-0.00081419	0.84649	0.00084859	1002.46911015109	9.9573	0.053194	9.9573	9.9307	9.9839	0	243	28	1.16194328902838	0.0179501929154187	1.16194328902838	468.595731768902	0	7.23906567903771						74	7	2	NaN	NaN	NaN	0.0013135	1	31681	28.277	27.758	1	13698			4616	2005	3912	4004	4616	4616		
ELDPTNMTYITNQAAVYFEK	20	Unmodified	_ELDPTNMTYITNQAAVYFEK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.375348	2347.10421	-0.32538	-0.00025489	0.053858	4.2191E-05	-0.27152	-0.0002127	783.709314819078	18.062	0.062073	18.062	18.045	18.107	0	612	40	0.914549654013882	0.0263574177216448	0.914549654013882	552.677778500844	0	15.9282320095834						188	8	3	NaN	NaN	NaN	9.015E-05	1	36019	70.638	61.507	1	35241			4617	934	3913	4005	4617	4617		
ELDPTNMTYITNQAAVYFEK	20	Unmodified	_ELDPTNMTYITNQAAVYFEK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.55938	2347.10421	0.76249	0.00089559	0.073994	8.691E-05	0.83649	0.0009825	1175.06076798533	18.062	0.16848	18.062	18.009	18.178	0	63	88	1.28111162701928	0.0574362266310753	1.28111162701928	516.13287696839	0	23.1398453250157						1228	20	6	NaN	NaN	NaN	4.6749E-22	1	36020	147.14	144.59	1	366130			4618	934	3913	4005	4618	4618		
ELDPTNMTYITNQAAVYFEK	20	Unmodified	_ELDPTNMTYITNQAAVYFEK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.375348	2347.10421	0.12986	0.00010173	0.79897	0.00062589	0.92883	0.00072762	783.710213622585	18.071	0.070933	18.071	18.027	18.098	0	489	52	0.997481546940468	0.0343055628620362	0.997481546940468	602.794917279527	0	20.7314300611147						269	9	4	NaN	NaN	NaN	0.0003735	1	36021	90.376	89.565	1	46521			4619	934	3913	4005	4619	4619		
ELDPTNMTYITNQAAVYFEK	20	Oxidation (M)	_ELDPTNM(Oxidation (M))TYITNQAAVYFEK_	ELDPTNM(1)TYITNQAAVYFEK	ELDPTNM(47)TYITNQAAVYFEK	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1182.55684	2363.09913	-0.13593	-0.00016075	0.75843	0.00089689	0.6225	0.00073614	1183.05892250058	14.79	0.10644	14.79	14.755	14.861	0	63	28	1.28111162701928	0.0178055038448577	1.28111162701928	516.112307351461	0	7.17317638768617						137	13	3	NaN	NaN	NaN	0.0029844	1	36153	46.528	46.163	1	22216			4620	934	3913	4006	4620	4620	331	
ELDQGTPQYMENMEQVFEQCQQFEEK	26	Unmodified	_ELDQGTPQYMENMEQVFEQCQQFEEK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1089.13014	3264.36858	0.75451	0.00082176	0.091863	0.00010005	0.84637	0.00092181	1089.46545354381	17.681	0.04434	17.681	17.663	17.708	0	393	22	1.0618830335572	0.014055768642631	1.0618830335572	640.65190162167	0	8.48008172754248						95	6	4	NaN	NaN	NaN	2.9692E-06	1	38520	38.769	37.928	1	12488			4621	3294	3914	4007	4621	4621		
ELDQWIEQLNECK	13	Unmodified	_ELDQWIEQLNECK_			0	0	0	P67775	P67775	P67775	PPP2CA	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.898519	1703.78249	2.1191	0.0018074	-1.2348	-0.0010532	0.8843	0.00075422	852.897997391905	15.189	0.10646	15.189	15.154	15.26	0	351	55	1.08996939197032	0.0360712461548371	1.08996939197032	440.100446873728	0	14.5646030695772						671	13	5	NaN	NaN	NaN	2.457E-17	1	24595	192.95	144.16	1	331600			4622	1439	3915	4008	4622	4622		
ELDSLQTEAESLDNTVK	17	Unmodified	_ELDSLQTEAESLDNTVK_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.460192	1890.90583	1.6923	0.0016017	0.088052	8.3338E-05	1.7804	0.0016851	946.962065962657	13.159	0.15076	13.159	13.114	13.265	0	234	37	1.16792504164217	0.0239220824983335	1.16792504164217	471.200093020709	0	9.65137923801558						339	18	4	NaN	NaN	NaN	9.2568E-19	1	29389	128.68	98.333	1	76743			4623	570	3916	4009	4623	4623		
ELDTVTLEDIK	11	Unmodified	_ELDTVTLEDIK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.337558	1274.66056	0.91292	0.00058275	1.9189	0.0012249	2.8318	0.0018077	638.337321397417	11.669	0.20392	11.669	11.589	11.793	0	540	61	0.963152256458504	0.0404125540648674	0.963152256458504	389.949649856323	0	16.3617550618007						871	23	5	NaN	NaN	NaN	5.2563E-06	1	11627	132.39	73.475	1	372070			4624	191	3917	4010	4624	4624		
ELDVEEAHAASTEEK	15	Unmodified	_ELDVEEAHAASTEEK_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.381214	1656.74787	3.7905	0.0031438	-2.413	-0.0020013	1.3775	0.0011425	829.379090945797	4.7514	0.11528	4.7514	4.7248	4.8401	0	333	52	1.10198982404297	0.034050864491993	1.10198982404297	445.055893656485	0	13.7519762847365						352	14	4	NaN	NaN	NaN	3.8289E-24	1	23235	181.44	158.48	1	91951			4625	2491	3918	4011	4625	4625		
ELDVEEAHAASTEEK	15	Unmodified	_ELDVEEAHAASTEEK_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.256568	1656.74787	1.2989	0.00071864	2.2866	0.0012651	3.5855	0.0019837	553.257891238206	4.7514	0.097538	4.7514	4.7159	4.8135	0	624	55	0.906433495720521	0.0365328548070064	0.906433495720521	549.11331116895	0	22.1314381741637						278	12	4	NaN	NaN	NaN	0.0028531	1	23236	41.317	38.646	1	86763			4626	2491	3918	4011	4626	4626		
ELEAENYHDIK	11	Unmodified	_ELEAENYHDIK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.822606	1359.63066	2.444	0.0016639	-0.38334	-0.00026099	2.0606	0.0014029	680.821491438536	4.9021	0.11528	4.9021	4.8667	4.9819	0	468	28	1.01159370163332	0.0181366797500251	1.01159370163332	409.28758608233	0	7.33804279569028						231	14	4	NaN	NaN	NaN	7.5777E-05	1	14174	121.8	101.56	1	88954			4627	1511	3919	4012	4627	4627		
ELEAFREELK	10	Unmodified	_ELEAFREELK_			0	0	1	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.33261	1262.65067	1.5904	0.0010056	-0.029362	-1.8567E-05	1.561	0.00098706	632.332089557624	8.2366	0.20407	8.2366	8.1567	8.3608	0	510	25	0.983355730988811	0.0161493714671825	0.983355730988811	398.169988802696	0	6.53903247179204						285	24	4	NaN	NaN	NaN	6.2291E-06	1	11301	144.47	49.161	1	95399			4628	912	3920	4013	4628	4628		
ELEANVLATAPDK	13	Unmodified	_ELEANVLATAPDK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.861731	1369.70891	1.6278	0.0011164	1.3205	0.00090567	2.9482	0.0020221	685.862065836656	9.1238	0.15962	9.1238	9.0528	9.2125	0	468	58	1.01159370163332	0.0382726935815298	1.01159370163332	409.257268744652	0	15.4838627577333						418	19	4	NaN	NaN	NaN	2.3245E-07	1	14486	108.2	86.152	1	112630			4629	3042	3921	4014	4629	4629		
ELEAVCQDVLSLLDNYLIK	19	Unmodified	_ELEAVCQDVLSLLDNYLIK_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1118.08249	2234.15044	0.30457	0.00034053	-2.0349	-0.0022752	-1.7303	-0.0019346	1118.58191125567	20.208	0.053225	20.208	20.19	20.244	0	87	43	1.26527909472281	0.0277145246283468	1.26527909472281	509.905986538052	0	11.1689208183324						131	7	3	NaN	NaN	NaN	2.5158E-26	1	35027	135.5	113.11	1	59271			4630	1361	3922	4015	4630	4630		
ELEAVCQDVLSLLDNYLIK	19	Unmodified	_ELEAVCQDVLSLLDNYLIK_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.724088	2234.15044	-0.015068	-1.1236E-05	-0.34551	-0.00025766	-0.36058	-0.00026889	746.058344971102	20.208	0.035463	20.208	20.199	20.235	0	498	28	0.991429299781895	0.0181617640607624	0.991429299781895	599.315586498841	0	10.9787236289303						107	5	4	NaN	NaN	NaN	1.2432E-05	1	35028	75.012	64.254	1	61526			4631	1361	3922	4015	4631	4631		
ELECAEDPGSAGEAAR	16	Unmodified	_ELECAEDPGSAGEAAR_			0	0	0	O94966	O94966	O94966	USP19	Ubiquitin carboxyl-terminal hydrolase 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.357216	1660.69988	3.0732	0.0025549	-0.59439	-0.00049415	2.4788	0.0020608	831.857823889139	4.8312	0.08865	4.8312	4.778	4.8667	0	417	25	1.04580932352505	0.0160825837476568	1.04580932352505	422.358173731432	0	6.49507567751238						119	11	3	NaN	NaN	NaN	0.0016365	1	23352	78.157	74.174	1	18391			4632	398	3923	4016	4632	4632		
ELEDAQAGSGTIGR	14	Unmodified	_ELEDAQAGSGTIGR_			0	0	0	P33897	P33897	P33897	ABCD1	ATP-binding cassette sub-family D member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.341694	1402.66884	2.3682	0.0016633	-1.8924	-0.0013291	0.47579	0.00033417	702.34044232102	5.0263	0.16846	5.0263	4.9997	5.1681	0	507	28	0.985374541851584	0.0181692995022645	0.985374541851584	398.556264935408	0	7.34897020224219						249	20	4	NaN	NaN	NaN	7.5873E-08	1	15535	141.44	116.62	1	57715			4633	949	3924	4017	4633	4633		
ELEDATETADAMNR	14	Oxidation (M)	_ELEDATETADAM(Oxidation (M))NR_	ELEDATETADAM(1)NR	ELEDATETADAM(190)NR	0	1	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.338491	1580.66243	2.9045	0.0022985	-0.3985	-0.00031535	2.506	0.0019831	791.338180619843	4.512	0.12411	4.512	4.4677	4.5918	0	456	46	1.01965166402748	0.0302111061455164	1.01965166402748	411.966685690878	0	12.2060991110081						233	15	2	NaN	NaN	NaN	4.9136E-17	1	20979	192.14	189.26	1	81039			4634	972	3925	4018	4634	4634	347	
ELEDYIDNLLVR	12	Unmodified	_ELEDYIDNLLVR_			0	0	0	Q6WKZ4;Q7L804	Q6WKZ4	Q6WKZ4	RAB11FIP1;RAB11FIP2	Rab11 family-interacting protein 1;Rab11 family-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.388113	1490.76167	0.20306	0.00015156	1.1364	0.00084821	1.3395	0.00099977	746.389135621662	18.24	0.088684	18.24	18.213	18.302	0	426	31	1.03977710643793	0.0201115556839417	1.03977710643793	420.317852311227	0	8.12986344801448						186	11	3	NaN	NaN	NaN	1.9959E-07	1	18261	118.91	89.599	1	42865			4635	2092	3926	4019	4635	4635		
ELEEDFIK	8	Unmodified	_ELEEDFIK_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.755672	1021.49679	-0.082175	-4.2053E-05	0.95304	0.00048772	0.87086	0.00044567	511.756146774985	9.4608	0.2128	9.4608	9.3987	9.6115	0	660	37	0.882057989648486	0.0244025785468278	0.882057989648486	358.064219276966	0	9.90602697130703						397	25	3	NaN	NaN	NaN	0.015283	1	4770	56.014	31.163	1	164450			4636	1715	3927	4020	4636	4636		
ELEEEAEEEQR	11	Unmodified	_ELEEEAEEEQR_			0	0	0	Q9H2J4	Q9H2J4	Q9H2J4	PDCL3	Phosducin-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.802068	1389.58958	2.7581	0.0019191	-1.2725	-0.00088541	1.4856	0.0010337	695.801489440562	3.9711	0.17732	3.9711	3.8824	4.0598	4.4409E-16	543	46	0.961130371139249	0.030328287920973	0.961130371139249	388.785897029975	0	12.2680657887882						383	21	4	NaN	NaN	NaN	4.1425E-05	1	15122	90.263	60.953	1	88529			4637	2869	3928	4021	4637	4637		
ELEEETNAFNR	11	Unmodified	_ELEEETNAFNR_			0	0	0	Q92599	Q92599	Q92599	SEPT8	Septin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.309863	1350.60517	1.4185	0.00095936	1.5679	0.0010604	2.9864	0.0020197	676.311749455579	6.6225	0.13301	6.6225	6.5693	6.7023	8.8818E-16	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.156102369419	0	9.79757124491573						208	16	3	NaN	NaN	NaN	1.0758E-07	1	13893	133.98	115.64	1	47542			4638	2416	3929	4022	4638	4638		
ELEEIVQPIISK	12	Unmodified	_ELEEIVQPIISK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.39795	1396.78135	1.6463	0.0011514	1.0806	0.0007558	2.727	0.0019072	699.399291656059	13.238	0.31928	13.238	13.141	13.46	0	471	70	1.00957851518677	0.0463621277227566	1.00957851518677	408.362881558231	0	18.7529466873937						1510	37	5	NaN	NaN	NaN	2.184E-11	1	15354	155.57	123.43	1	2596000			4639	638	3930	4023	4639	4639		
ELEELSLEAQGIK	13	Unmodified	_ELEELSLEAQGIK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.887946	1457.76134	0.71501	0.00052187	0.79105	0.00057738	1.5061	0.0010993	729.888724651341	11.917	0.25717	11.917	11.855	12.112	0	399	85	1.0578662689527	0.0562502727977954	1.0578662689527	427.719215086986	0	22.7432552068429						622	30	3	NaN	NaN	NaN	0.00041504	1	17202	92.445	52.058	1	181940			4640	288	3931	4024	4640	4640		
ELEEQLENETLHK	13	Unmodified	_ELEEQLENETLHK_			0	0	0	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.396667	1610.77878	2.6497	0.0021367	0.37004	0.0002984	3.0198	0.0024351	806.396807387555	8.1302	0.14199	8.1302	8.0502	8.1922	0	354	34	1.08796502040166	0.0220511287712513	1.08796502040166	439.495730220183	0	8.90780196032625						207	17	3	NaN	NaN	NaN	2.4762E-11	1	21915	157.77	98.851	1	51459			4641	5	3932	4025	4641	4641		
ELEEWYAR	8	Unmodified	_ELEEWYAR_			0	0	0	P09496	P09496	P09496	CLTA	Clathrin light chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.258914	1094.50327	0.59392	0.00032562	2.2748	0.0012472	2.8687	0.0015728	548.259791170104	8.6891	0.19531	8.6891	8.6268	8.8221	0	636	49	0.898312834727904	0.0324871583843739	0.898312834727904	364.339181314548	0	13.1761945632047						494	23	3	NaN	NaN	NaN	0.0022429	1	6563	70.67	62.487	1	182710			4642	603	3933	4026	4642	4642		
ELEHVNLSVK	10	Unmodified	_ELEHVNLSVK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.322045	1166.62954	1.1946	0.00069801	0.5017	0.00029315	1.6963	0.00099117	584.322587210299	6.4096	0.11525	6.4096	6.3742	6.4895	0	552	25	0.955063035883597	0.0161829214477363	0.955063035883597	387.058141080437	0	6.55844824631544						138	14	3	NaN	NaN	NaN	0.0080387	1	8519	55.235	32.182	1	30617			4643	1668	3934	4027	4643	4643		
ELEIEER	7	Unmodified	_ELEIEER_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.232364	916.450176	-0.4631	-0.00021267	2.8971	0.0013304	2.434	0.0011178	459.233664200848	5.2391	0.15963	5.2391	5.2036	5.3632	0	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	344.541704249821	0	8.28482757392624						216	19	3	NaN	NaN	NaN	0.009921	1	2633	60.709	4.6179	1	45492			4644	1728	3935	4028	4644	4644		
ELEIGQAGSQR	11	Unmodified	_ELEIGQAGSQR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.304384	1186.59421	1.4571	0.00086596	-0.76324	-0.0004536	0.69387	0.00041237	594.304300969054	5.1681	0.133	5.1681	5.1327	5.2657	0	618	28	0.910492137470517	0.018260091794093	0.910492137470517	368.92235790931	0	7.39880757129049						239	16	4	NaN	NaN	NaN	1.4059E-11	1	9057	134.66	73.95	1	76026			4645	1794	3936	4029	4645	4645		
ELENEENQEEQGLEEK	16	Unmodified	_ELENEENQEEQGLEEK_			0	0	0	Q8IWE2	Q8IWE2	Q8IWE2	FAM114A1	Protein NOXP20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.926714	1945.83887	3.1377	0.0030559	-2.6348	-0.0025661	0.50291	0.00048979	973.924162338218	5.7534	0.062079	5.7534	5.7179	5.78	0	312	40	1.11600111266355	0.0260102225300953	1.11600111266355	450.15876213225	0	10.4916827089777						191	8	3	NaN	NaN	NaN	9.416E-09	1	30634	152.23	148.72	1	41781			4646	2203	3937	4030	4646	4646		
ELEPITTSQALQIAGR	16	Unmodified	_ELEPITTSQALQIAGR_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.970333	1725.92611	1.885	0.0016286	-0.76057	-0.00065711	1.1244	0.00097145	863.969657251756	13.096	0.14187	13.096	13.017	13.159	0	309	40	1.11800162319566	0.0260138037074695	1.11800162319566	451.372372723525	0	10.5025896737448						290	17	4	NaN	NaN	NaN	8.3438E-05	1	25219	89.382	83.684	1	72216			4647	2223	3938	4031	4647	4647		
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	31	Unmodified	_ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	764.629006	3054.48692	0.35505	0.00027148	0.4903	0.00037489	0.84534	0.00064637	764.880353747925	16.706	0.1064	16.706	16.652	16.759	0	426	25	1.03977710643793	0.0160914648134829	1.03977710643793	836.66278235223	0	12.9480920859025						142	13	3	NaN	NaN	NaN	0.01756	1	38295	36.291	36.141	1	28822			4648	618	3939	4032	4648	4648		
ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK	31	Unmodified	_ELEQVCNPIISGLYQGAGGPGPGGFGAQGPK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1019.16958	3054.48692	1.4199	0.0014471	0.54879	0.00055931	1.9687	0.0020064	1019.50480778804	16.706	0.27487	16.706	16.573	16.847	0	375	139	1.07392668217569	0.0923730763908344	1.07392668217569	648.107048695632	0	55.7464889477492						4549	32	8	NaN	NaN	NaN	6.4174E-61	1	38296	316.49	315.65	1	3467500			4649	618	3939	4032	4649	4649		
ELESQISELQEDLESER	17	Unmodified	_ELESQISELQEDLESER_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.47911	2032.94367	1.5761	0.0016037	1.8543	0.0018867	3.4304	0.0034904	1017.48280311719	15.633	0.22168	15.633	15.579	15.801	-1.7764E-15	204	76	1.18784641916898	0.0497727018323908	1.18784641916898	478.993411382992	0	20.070604970232						1170	26	5	NaN	NaN	NaN	2.0385E-26	1	32200	190.06	173.96	1	434370			4650	972	3940	4033	4650	4650		
ELETVAAHQFPEVR	14	Unmodified	_ELETVAAHQFPEVR_			0	0	0	Q969V3	Q969V3	Q969V3	NCLN	Nicalin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.417736	1624.82092	2.2365	0.0018192	-1.3965	-0.0011359	0.84001	0.00068328	813.416795366268	8.9375	0.10658	8.9375	8.8931	8.9996	0	294	22	1.12800004657306	0.0139939408517145	1.12800004657306	455.634760715379	0	5.65259364200131						181	13	3	NaN	NaN	NaN	4.3928E-09	1	22333	144.27	131.09	1	32174			4651	2463	3941	4034	4651	4651		
ELETVCNDVLSLLDK	15	Unmodified	_ELETVCNDVLSLLDK_			0	0	0	Q04917	Q04917	Q04917	YWHAH	14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.44276	1746.87097	1.6578	0.0014497	-0.96053	-0.00083993	0.69731	0.00060976	874.442112947505	18.763	0.13301	18.763	18.718	18.851	0	291	43	1.12999890578964	0.0279821102463456	1.12999890578964	456.172468954546	0	11.2961775911755						542	16	5	NaN	NaN	NaN	8.5889E-12	1	25804	160.52	108.65	1	256440			4652	1547	3942	4035	4652	4652		
ELEVQHPAAK	10	Unmodified	_ELEVQHPAAK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.301113	1120.58767	1.6105	0.00090399	-0.087633	-4.9188E-05	1.5229	0.0008548	561.301259361185	2.9158	0.32806	2.9158	2.8006	3.1286	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	360.939267122956	0	9.06292211601738						546	38	4	NaN	NaN	NaN	0.0011171	1	7285	74.269	34.945	1	157260			4653	1174	3943	4036	4653	4653		
ELFDVVANPLVNDLIHGK	18	Unmodified	_ELFDVVANPLVNDLIHGK_			0	0	0	Q02241	Q02241	Q02241	KIF23	Kinesin-like protein KIF23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.029952	1992.06803	-0.033983	-2.26E-05	0.79244	0.000527	0.75846	0.0005044	665.364748112189	19.419	0.053255	19.419	19.392	19.446	0	549	25	0.957085760909907	0.0161829214477363	0.957085760909907	578.98895645544	0	9.78985706831259						100	7	3	NaN	NaN	NaN	0.052772	1	31499	24.922	24.77	1	18460			4654	1527	3944	4037	4654	4654		
ELFEEVISK	9	Unmodified	_ELFEEVISK_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.292422	1092.57029	-0.47222	-0.00025844	-1.6892	-0.00092446	-2.1614	-0.0011829	547.291114034968	11.695	0.15961	11.695	11.607	11.766	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	359.403290408521	0	9.89196324715044						204	19	2	NaN	NaN	NaN	0.001223	1	6529	72.038	25.203	1	54914			4655	407	3945	4038	4655	4655		
ELFESWCTDK	10	Unmodified	_ELFESWCTDK_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.787178	1313.5598	0.86339	0.00056793	1.2838	0.00084444	2.1471	0.0014124	657.788288791225	11.261	0.16847	11.261	11.172	11.341	0	552	31	0.955063035883597	0.0202258527858471	0.955063035883597	386.551821560881	0	8.18620336380008						261	20	4	NaN	NaN	NaN	2.3553E-05	1	12751	92.732	71.644	1	57602			4656	3261	3946	4039	4656	4656		
ELFGPELFR	9	Unmodified	_ELFGPELFR_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.295299	1106.57605	-0.071431	-3.9594E-05	-0.72192	-0.00040016	-0.79335	-0.00043975	554.295331970687	15.251	0.19507	15.251	15.171	15.367	0	648	73	0.890187667287968	0.0487375152988332	0.890187667287968	360.994799437738	0	19.7643600410659						743	23	3	NaN	NaN	NaN	0.038415	1	6898	53.878	35.475	1	156080			4657	964	3947	4040	4657	4657		
ELFPIQMEGVK	11	Unmodified	_ELFPIQMEGVK_			0	0	0	O96008	O96008	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.841756	1289.66896	1.2914	0.00083405	1.1544	0.00074559	2.4459	0.0015796	645.842438242159	14.214	0.24828	14.214	14.116	14.365	0	528	37	0.971237000454584	0.0242441707123356	0.971237000454584	393.173854449193	0	9.81446757324085						498	29	2	NaN	NaN	NaN	0.0063979	1	12060	34.953	4.0344	1	182600			4658	469	3948	4041	4658	4658		
ELFQTPCTDNPTTDEK	16	Unmodified	_ELFQTPCTDNPTTDEK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.420013	1894.82547	2.3701	0.0022479	-1.4862	-0.0014096	0.88388	0.00083829	948.419045362317	8.9819	0.18636	8.9819	8.8842	9.0706	0	243	40	1.16194328902838	0.0259280591275983	1.16194328902838	468.77969307272	0	10.4605342744142						584	22	5	NaN	NaN	NaN	2.2081E-06	1	29488	115.05	105.03	1	136010			4659	1074	3949	4042	4659	4659		
ELFQTPGHTEEAVAAGK	17	Unmodified	_ELFQTPGHTEEAVAAGK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.631969	1783.87408	0.10493	6.2498E-05	0.28505	0.00016979	0.38998	0.00023228	595.632743892291	7.5536	0.10642	7.5536	7.5003	7.6068	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	548.78902164372	0	11.0599475393702						235	13	3	NaN	NaN	NaN	0.037144	1	26793	11.679	11.419	1	57787			4660	1074	3950	4043	4660	4660		
ELFQTPGHTEEAVAAGK	17	Unmodified	_ELFQTPGHTEEAVAAGK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.944315	1783.87408	1.398	0.0012484	0.09279	8.2857E-05	1.4908	0.0013312	892.944000547787	7.5536	0.08866	7.5536	7.5092	7.5979	0	135	49	1.23356193185193	0.0317563156374501	1.23356193185193	497.89877702027	0	12.8177031977783						248	11	3	NaN	NaN	NaN	0.00017416	1	26794	78.157	52.544	1	40790			4661	1074	3950	4043	4661	4661		
ELFQTPGHTEELVAAGK	17	Unmodified	_ELFQTPGHTEELVAAGK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.96779	1825.92103	1.2538	0.0011459	-0.29394	-0.00026865	0.95988	0.0008773	914.468363655642	9.8952	0.062083	9.8952	9.8598	9.9218	0	102	31	1.25537494996371	0.0198150763975524	1.25537494996371	506.613089985341	0	7.9964771340625						153	8	3	NaN	NaN	NaN	6.2681E-10	1	27878	126.32	107.51	1	27278			4662	1074	3951	4044	4662	4662		
ELFQTPGHTEELVAAGK	17	Unmodified	_ELFQTPGHTEELVAAGK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.647619	1825.92103	0.63515	0.00038722	1.0968	0.00066866	1.7319	0.0010559	609.98286465812	9.8952	0.097537	9.8952	9.8509	9.9484	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	551.148459421379	0	11.0549189806247						242	12	4	NaN	NaN	NaN	1.2049E-06	1	27879	84.102	67.814	1	58305			4663	1074	3951	4044	4663	4663		
ELFQTPGHTEESMTDDK	17	Unmodified	_ELFQTPGHTEESMTDDK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.622922	1963.84694	0.59876	0.00039256	1.292	0.00084708	1.8908	0.0012396	655.624004312719	7.6422	0.11527	7.6422	7.5713	7.6865	0	681	46	0.867820189810857	0.0305138129080004	0.867820189810857	525.039903031164	0	18.4611622988622						453	14	4	NaN	NaN	NaN	7.2265E-07	1	30992	126.17	105.02	1	90945			4664	1074	3952	4045	4664	4664		
ELFQTPGPSEESMTDEK	17	Unmodified	_ELFQTPGPSEESMTDEK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.927671	1923.84079	1.8286	0.0017608	-0.3818	-0.00036765	1.4468	0.0013932	962.927278461009	10.223	0.097532	10.223	10.179	10.277	0	270	31	1.14398322290989	0.0199652358426974	1.14398322290989	461.483196295738	0	8.05398249464713						159	12	3	NaN	NaN	NaN	0.0041545	1	30139	43.518	36.663	1	27575			4665	1074	3953	4046	4665	4665		
ELFQTPGTDKPTTDEK	16	Unmodified	_ELFQTPGTDKPTTDEK_			0	0	1	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.941438	1805.86832	2.1391	0.0019336	-1.3902	-0.0012567	0.74882	0.00067689	903.939711035963	6.454	0.079807	6.454	6.4185	6.4983	0	309	28	1.11800162319566	0.0180045964949538	1.11800162319566	451.213139189001	0	7.26645680629537						131	10	3	NaN	NaN	NaN	0.061048	1	27371	52.201	43.827	1	21553			4666	1074	3954	4047	4666	4666		
ELFQTPVCTDKPTTHEK	17	Unmodified	_ELFQTPVCTDKPTTHEK_			0	0	1	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.666573	2029.97789	0.39229	0.00026584	1.0656	0.00072209	1.4579	0.00098794	678.001513931738	6.3121	0.044367	6.3121	6.2855	6.3299	0	618	22	0.910492137470517	0.0142042621835186	0.910492137470517	550.731032417539	0	8.59175785832838						88	6	3	NaN	NaN	NaN	0.057451	1	32153	38.14	37.621	1	14726			4667	1074	3955	4048	4667	4667		
ELFSAPGHTEESMTIDK	17	Unmodified	_ELFSAPGHTEESMTIDK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.296258	1890.86694	-0.42189	-0.00026634	0.26169	0.0001652	-0.16021	-0.00010114	631.296226893275	9.31	0.088718	9.31	9.2745	9.3632	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	522.718593543298	0	13.5512505307883						225	11	4	NaN	NaN	NaN	8.1892E-05	1	29381	113.34	97.723	1	45857			4668	1074	3956	4049	4668	4668		
ELFSAPGHTEESMTIDK	17	Unmodified	_ELFSAPGHTEESMTIDK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.440748	1890.86694	1.4851	0.0014055	3.7391	0.0035389	5.2242	0.0049444	946.945323159616	9.31	0.053239	9.31	9.2745	9.3278	0	228	25	1.17191150690002	0.0159436712794023	1.17191150690002	472.808493177339	0	6.43248500329992						89	7	3	NaN	NaN	NaN	0.0001911	1	29384	78.888	70.923	1	24036			4669	1074	3956	4049	4669	4669		
ELFSPLHALNFGIGGDGTQHVLWR	24	Unmodified	_ELFSPLHALNFGIGGDGTQHVLWR_			0	0	0	Q15102	Q15102	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	888.794228	2663.36085	1.0399	0.00092426	2.5153	0.0022356	3.5552	0.0031599	889.464962581916	18.027	0.062067	18.027	17.991	18.053	0	255	31	1.15396378101328	0.0199597456368612	1.15396378101328	696.872432585094	0	12.0535815114799						159	8	4	NaN	NaN	NaN	0.057185	1	37483	20.035	17.72	1	25952			4670	1812	3957	4050	4670	4670		
ELFSPLHALNFGIGGDTTR	19	Unmodified	_ELFSPLHALNFGIGGDTTR_			0	0	0	P68402	P68402	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.353206	2044.03779	-0.66681	-0.000455	-1.3844	-0.00094468	-2.0513	-0.0013997	682.686895885569	17.069	0.22166	17.069	16.963	17.184	0	651	76	0.888155670855968	0.0508281523938705	0.888155670855968	537.195265569943	0	30.7430822316766						1136	26	6	NaN	NaN	NaN	1.2511E-19	1	32423	166.65	145.5	1	547880			4671	1451	3958	4051	4671	4671		
ELFSPLHALNFGIGGDTTR	19	Unmodified	_ELFSPLHALNFGIGGDTTR_			0	0	0	P68402	P68402	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.02617	2044.03779	0.80446	0.00082299	4.3427	0.0044426	5.1471	0.0052656	1023.53454604952	17.078	0.18621	17.078	16.998	17.184	0	195	85	1.19381749893585	0.0556727806631161	1.19381749893585	481.383489948882	0	22.4489567916859						942	22	5	NaN	NaN	NaN	0.036893	1	32425	43.518	42.248	1	205940			4672	1451	3958	4051	4672	4672		
ELFVQSEIFPLETPAFAIK	19	Unmodified	_ELFVQSEIFPLETPAFAIK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.08791	2178.16126	-0.039764	-4.3346E-05	-0.51559	-0.00056204	-0.55536	-0.00060539	1090.58857648292	19.924	0.044334	19.924	19.915	19.96	0	72	70	1.27517645957152	0.0455403764010889	1.27517645957152	513.976243313225	0	18.3556333760794						238	6	4	NaN	NaN	NaN	5.8239E-07	1	34426	89.359	83.744	1	79689			4673	1155	3959	4052	4673	4673		
ELGAFGLQVPSELGGVGLCNTQYAR	25	Unmodified	_ELGAFGLQVPSELGGVGLCNTQYAR_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.442755	2635.30644	1.5573	0.0013695	0.057631	5.0684E-05	1.6149	0.0014202	879.777512466439	18.284	0.088686	18.284	18.24	18.328	0	288	34	1.13199748998575	0.0219814046771438	1.13199748998575	683.644904901869	0	13.2751843030188						272	11	5	NaN	NaN	NaN	0.00040854	1	37377	78.75	76.3	1	57122			4674	1145	3960	4053	4674	4674		
ELGDHVTNLR	10	Unmodified	_ELGDHVTNLR_			0	0	0	P02794	P02794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.301644	1152.58874	1.5957	0.0009212	1.7198	0.00099283	3.3155	0.001914	577.302211314581	4.9553	0.21276	4.9553	4.8844	5.0972	0	594	40	0.926715457081489	0.0263391634913087	0.926715457081489	375.623174517694	0	10.675984876635						236	25	3	NaN	NaN	NaN	0.044243	1	8131	39.01	32.319	1	59669			4675	496	3961	4054	4675	4675		
ELGDVLFQMAEVHR	14	Unmodified	_ELGDVLFQMAEVHR_			0	0	0	Q9UQB8	Q9UQB8	Q9UQB8	BAIAP2	Brain-specific angiogenesis inhibitor 1-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.611852	1642.81373	-1.5077	-0.00082717	-0.12578	-6.9005E-05	-1.6335	-0.00089617	548.611673891859	16.076	0.10642	16.076	16.032	16.138	0	738	25	0.829104889055312	0.0163227098451795	0.829104889055312	502.303289649942	0	9.88891871157233						192	13	4	NaN	NaN	NaN	0.00013493	1	22833	117.99	107.2	1	46609			4676	3320	3962	4055	4676	4676		
ELGENLDQILR	11	Unmodified	_ELGENLDQILR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.348791	1298.68303	0.99932	0.00064991	-1.7372	-0.0011298	-0.73786	-0.00047987	650.348050574206	13.779	0.15959	13.779	13.726	13.886	0	600	76	0.922661313351899	0.050638233668732	0.922661313351899	373.482097520207	0	20.4977421851688						477	19	4	NaN	NaN	NaN	1.8241E-11	1	12321	187.1	110.53	1	239090			4677	2594	3963	4056	4677	4677		
ELGENMSDEELR	12	Unmodified	_ELGENMSDEELR_			0	0	0	O15182	O15182	O15182	CETN3	Centrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.314288	1420.61402	1.4346	0.0010205	2.0968	0.0014915	3.5314	0.002512	711.315363337397	7.5181	0.062065	7.5181	7.4826	7.5447	8.8818E-16	462	25	1.01562323939346	0.0161159257109076	1.01562323939346	410.740333312443	0	6.51763413969331						100	8	3	NaN	NaN	NaN	0.0042738	1	16103	66.664	59.107	1	21642			4678	153	3964	4057	4678	4678		
ELGEYFLFDPK	11	Unmodified	_ELGEYFLFDPK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.337361	1356.66017	0.55739	0.00037866	0.75423	0.00051238	1.3116	0.00089104	679.337388078248	16.271	0.23054	16.271	16.191	16.422	0	480	52	1.00353128488872	0.0342818598335937	1.00353128488872	406.034500551682	0	13.870636665861						549	27	4	NaN	NaN	NaN	0.015589	1	14084	32.549	21.193	1	182870			4679	270	3965	4058	4679	4679		
ELGGAIDFGAAYVLEQASSHIGNSTQATVR	30	Unmodified	_ELGGAIDFGAAYVLEQASSHIGNSTQATVR_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1021.51077	3061.51049	0.80596	0.00082329	0.59758	0.00061043	1.4035	0.0014337	1022.17970433194	18.781	0.11529	18.781	18.745	18.86	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	645.678247068492	0	10.9015188370165						285	14	5	NaN	NaN	NaN	0.00040879	1	38307	20.17	18.627	1	62218			4680	2029	3966	4059	4680	4680		
ELGGLEGDPSPEEDEGIQK	19	Unmodified	_ELGGLEGDPSPEEDEGIQK_			0	0	0	Q9BT09	Q9BT09	Q9BT09	CNPY3	Protein canopy homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.960556	1997.90656	2.3605	0.0023604	-0.90137	-0.00090133	1.4591	0.0014591	1000.46116582633	8.831	0.14202	8.831	8.7866	8.9287	0	279	43	1.13799159301878	0.0279628687340265	1.13799159301878	458.944279684203	0	11.2772350233258						497	17	4	NaN	NaN	NaN	1.2696E-14	1	31593	137.4	126.43	1	131380			4681	2728	3967	4060	4681	4681		
ELGGLGMLSMGHVLIPQSDLR	21	Unmodified	_ELGGLGMLSMGHVLIPQSDLR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.725658	2222.15514	0.28151	0.0002088	0.25371	0.00018818	0.53521	0.00039698	742.060165869294	17.486	0.14187	17.486	17.424	17.566	0	543	43	0.961130371139249	0.028308359885891	0.961130371139249	581.01935297717	0	17.1128760869865						526	17	5	NaN	NaN	NaN	9.3214E-12	1	34917	148.82	144.97	1	172060			4682	2064	3968	4061	4682	4682		
ELGIQVHSVTR	11	Unmodified	_ELGIQVHSVTR_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.846219	1237.67788	1.6514	0.0010236	0.3142	0.00019476	1.9656	0.0012184	619.846325721914	6.3565	0.10639	6.3565	6.3299	6.4363	0	522	28	0.975277694896658	0.0181818689972096	0.975277694896658	394.985300534892	0	7.36361656554635						200	13	3	NaN	NaN	NaN	0.00061095	1	10558	78.932	59.676	1	66471			4683	2546	3969	4062	4683	4683		
ELGITALHIK	10	Unmodified	_ELGITALHIK_			0	0	0	P62263	P62263	P62263	RPS14	40S ribosomal protein S14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.832049	1093.64954	1.1531	0.00063172	1.7247	0.00094485	2.8778	0.0015766	547.833181377323	10.214	0.24828	10.214	10.161	10.41	0	570	40	0.942920803299286	0.0263209282177764	0.942920803299286	382.435067989999	0	10.6753885769664						591	29	4	NaN	NaN	NaN	3.6913E-05	1	6558	133.98	86.628	1	483480			4684	1376	3970	4063	4684	4684		
ELGLDEGVDSLK	12	Unmodified	_ELGLDEGVDSLK_			0	0	0	Q8WXX5	Q8WXX5	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.827357	1273.64016	1.8575	0.0011848	0.83414	0.00053204	2.6916	0.0017168	637.827753585616	10.986	0.13302	10.986	10.942	11.075	0	468	58	1.01159370163332	0.0382938495713495	1.01159370163332	409.565568887602	0	15.5040924624805						442	16	3	NaN	NaN	NaN	1.7424E-05	1	11595	103.87	87.415	1	140660			4685	2398	3971	4064	4685	4685		
ELGLGLGLGLK	11	Unmodified	_ELGLGLGLGLK_			0	0	0	Q9BTD8	Q9BTD8	Q9BTD8	RBM42	RNA-binding protein 42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.334424	1068.6543	0.39993	0.0002141	-0.77003	-0.00041222	-0.37009	-0.00019812	535.334126029911	15.189	0.08867	15.189	15.145	15.234	0	600	43	0.922661313351899	0.0283947491785544	0.922661313351899	374.327005505035	0	11.5198516273122						225	11	3	NaN	NaN	NaN	0.047209	1	5938	24.121	17.359	1	58917			4686	2733	3972	4065	4686	4686		
ELGLPEELVSR	11	Unmodified	_ELGLPEELVSR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.340435	1240.66632	0.99372	0.00061744	-1.6255	-0.00101	-0.63177	-0.00039254	621.339785695009	13.114	0.23055	13.114	13.043	13.274	0	558	55	0.951016745717027	0.0364216673662339	0.951016745717027	385.149444179651	0	14.750302773717						867	27	4	NaN	NaN	NaN	0.0050639	1	10645	78.932	53.075	1	462510			4687	1155	3973	4066	4687	4687		
ELGNDAYK	8	Unmodified	_ELGNDAYK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.219257	908.423961	0.11245	5.1188E-05	0.4852	0.00022087	0.59765	0.00027206	455.22042065745	2.9956	0.36357	2.9956	2.9513	3.3149	0	771	46	0.806643990516186	0.0306583415833394	0.806643990516186	327.991791705753	0	12.4660748792186						564	42	3	NaN	NaN	NaN	0.019378	1	2473	51.43	24.951	1	142430			4688	934	3974	4067	4688	4688		
ELGPDGEEAEGPGAGDGPPR	20	Unmodified	_ELGPDGEEAEGPGAGDGPPR_			0	0	0	P18615	P18615	P18615	NELFE	Negative elongation factor E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.924308	1905.83406	2.7321	0.0026063	-3.204	-0.0030564	-0.47187	-0.00045013	954.422770741335	6.2589	0.12422	6.2589	6.1968	6.321	0	324	46	1.1079963157843	0.0300241961633021	1.1079963157843	446.996316294188	0	12.1125899910509						359	15	3	NaN	NaN	NaN	5.8529E-08	1	29711	110.14	108.15	1	69771			4689	755	3975	4068	4689	4689		
ELGSECGIEFDEEK	14	Unmodified	_ELGSECGIEFDEEK_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.351068	1640.68758	1.4641	0.0012025	0.73699	0.00060533	2.2011	0.0018079	821.351678926457	9.3721	0.25715	9.3721	9.3278	9.5849	0	390	46	1.06389100039157	0.0301195105360905	1.06389100039157	429.703955290225	0	12.1652244487454						717	30	5	NaN	NaN	NaN	0.029614	1	22767	52.837	48.855	1	260620			4690	1011	3976	4069	4690	4690		
ELGSSTNALR	10	Unmodified	_ELGSSTNALR_			0	0	0	P08579	P08579	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.275095	1046.53564	1.6011	0.0008394	2.2758	0.0011931	3.8768	0.0020325	524.276163142772	4.4056	0.23932	4.4056	4.2904	4.5297	0	669	49	0.875957769340875	0.0325412920913477	0.875957769340875	355.4747540737	0	13.2056683647163						429	28	2	NaN	NaN	NaN	0.031402	1	5395	51.864	32.608	1	154900			4691	585	3977	4070	4691	4691		
ELHINLIPNK	10	Unmodified	_ELHINLIPNK_			0	0	0	P07900;Q14568	P07900	P07900	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	397.567912	1189.68191	-2.0427	-0.00081211	-0.41824	-0.00016628	-2.4609	-0.00097839	397.567871197197	10.037	0.16845	10.037	9.9573	10.126	0	810	28	0.78005493425781	0.0184231892400387	0.78005493425781	474.087008412966	0	11.1968968961733						310	20	3	NaN	NaN	NaN	0.00476	1	9158	53.878	51.719	1	100640			4692	567	3978	4071	4692	4692		
ELHINLIPNK	10	Unmodified	_ELHINLIPNK_			0	0	0	P07900;Q14568	P07900	P07900	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.84823	1189.68191	1.4954	0.00089106	1.0908	0.00064998	2.5863	0.001541	595.84903429881	10.037	0.25713	10.037	9.9396	10.197	0	576	52	0.938871150116794	0.0344292157937285	0.938871150116794	380.409895442304	0	13.9499593513162						960	30	4	NaN	NaN	NaN	1.3079E-07	1	9159	142.04	116.79	1	850150			4693	567	3978	4071	4693	4693		
ELHMLATEPPPGITCWQDK	19	Unmodified	_ELHMLATEPPPGITCWQDK_			0	0	0	Q9NPD8	Q9NPD8	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.690613	2222.05001	0.17026	0.00012628	-0.33263	-0.00024671	-0.16237	-0.00012043	742.024728065865	13.105	0.079786	13.105	13.07	13.15	0	588	46	0.93076847747433	0.0304039794505214	0.93076847747433	562.665248760115	0	18.3797185603515						326	10	4	NaN	NaN	NaN	0.0010052	1	34913	44.571	43.391	1	59283			4694	2986	3979	4072	4694	4694		
ELHSEFSEVMNEIWASDQIR	20	Unmodified	_ELHSEFSEVMNEIWASDQIR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	807.377751	2419.11142	0.62084	0.00050125	-1.0608	-0.00085645	-0.43994	-0.0003552	807.711200618385	18.656	0.070923	18.656	18.63	18.701	0	567	58	0.944945209309785	0.0384477564572652	0.944945209309785	570.946332049137	0	23.230559093292						431	9	4	NaN	NaN	NaN	3.7524E-06	1	36438	78.71	77.899	1	105940			4695	1026	3980	4073	4695	4695		
ELIDHSPK	8	Unmodified	_ELIDHSPK_			0	0	0	O43674	O43674	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.750724	937.486896	0.53502	0.00025133	0.32497	0.00015266	0.85999	0.00040398	469.750978669608	2.8006	0.19507	2.8006	2.7474	2.9424	0	723	25	0.839303037468863	0.0163113695706084	0.839303037468863	341.113776370662	0	6.62934914281681						226	23	3	NaN	NaN	NaN	0.0021365	1	3030	90.308	34.218	1	49383			4696	217	3981	4074	4696	4696		
ELIEQLR	7	Unmodified	_ELIEQLR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.761092	899.507631	0.38435	0.00017325	-1.2217	-0.00055069	-0.83734	-0.00037744	450.760892863231	7.7753	0.23058	7.7753	7.7221	7.9527	0	732	43	0.833184998970724	0.0285568061062612	0.833184998970724	338.833721036098	0	11.6132778264661						394	27	2	NaN	NaN	NaN	0.0079722	1	2316	61.494	4.604	1	143550			4697	934	3982	4075	4697	4697		
ELIFEETAR	9	Unmodified	_ELIFEETAR_			0	0	0	P28482	P28482	P28482	MAPK1	Mitogen-activated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.287671	1106.56079	0.83273	0.00046157	-2.669	-0.0014794	-1.8363	-0.0010178	554.288638019784	9.7711	0.23056	9.7711	9.6913	9.9218	0	630	25	0.902373728295776	0.0162390708699242	0.902373728295776	365.936642458861	0	6.58537686155211						228	27	4	NaN	NaN	NaN	0.010429	1	6888	56.014	32.439	1	50473			4698	879	3983	4076	4698	4698		
ELIHLLPIK	9	Unmodified	_ELIHLLPIK_			0	0	0	Q8WTT2	Q8WTT2	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.347335	1074.68012	1.1695	0.00062961	-1.7573	-0.00094604	-0.58779	-0.00031643	538.346437250245	12.839	0.15961	12.839	12.777	12.937	0	630	34	0.902373728295776	0.0223302721813649	0.902373728295776	366.070142512386	0	9.05882525548571						274	19	3	NaN	NaN	NaN	0.00015649	1	6088	90.308	77.481	1	77473			4699	2361	3984	4077	4699	4699		
ELIINEILVMK	11	Unmodified	_ELIINEILVMK_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.888706	1313.76286	0.054275	3.5707E-05	-0.65807	-0.00043294	-0.6038	-0.00039723	657.888283734794	18.275	0.079808	18.275	18.248	18.328	0	513	61	0.981336640919867	0.0403622812551794	0.981336640919867	397.1851587333	0	16.3361872151736						279	10	3	NaN	NaN	NaN	0.0057785	1	12782	64.064	40.229	1	60664			4700	1638	3985	4078	4700	4700		
ELIQTSALNFLTPLR	15	Unmodified	_ELIQTSALNFLTPLR_			0	0	0	Q9Y371	Q9Y371	Q9Y371	SH3GLB1	Endophilin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.488162	1714.96177	1.6243	0.0013945	-3.0704	-0.0026359	-1.4461	-0.0012415	858.485710724455	18.71	0.070929	18.71	18.674	18.745	0	324	49	1.1079963157843	0.0320191966216983	1.1079963157843	447.355709773053	0	12.9278141335006						257	9	3	NaN	NaN	NaN	3.8812E-06	1	24921	95.656	63.107	1	71993			4701	3370	3986	4079	4701	4701		
ELISDNQYR	9	Unmodified	_ELISDNQYR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.280377	1136.5462	2.056	0.0011705	0.49196	0.00028006	2.548	0.0014505	569.280855091872	5.6471	0.26605	5.6471	5.5494	5.8155	0	609	40	0.916577990479294	0.0263720347724746	0.916577990479294	371.576180550959	0	10.6910923630068						589	31	4	NaN	NaN	NaN	0.00020595	1	7704	98.009	53.242	1	180780			4702	835	3987	4080	4702	4702		
ELISFLSEPEILVK	14	Unmodified	_ELISFLSEPEILVK_			0	0	0	A6NDU8	A6NDU8	A6NDU8	C5orf51	UPF0600 protein C5orf51	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.960914	1615.90728	1.4353	0.0011611	-3.4285	-0.0027735	-1.9932	-0.0016124	808.958796577105	18.825	0.17732	18.825	18.745	18.922	0	297	76	1.12600091227925	0.0500196857301183	1.12600091227925	454.848463859395	0	20.2054696128272						328	21	4	NaN	NaN	NaN	9.2287E-08	1	22087	117.99	110.85	1	71382			4703	13	3988	4081	4703	4703		
ELISNASDALDK	12	Unmodified	_ELISNASDALDK_			0	0	0	P08238;P14625	P08238;P14625	P08238	HSP90AB1;HSP90B1	Heat shock protein HSP 90-beta;Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.324982	1274.63541	2.258	0.0014413	1.8829	0.0012019	4.1409	0.0026433	638.326256500941	8.2544	0.46121	8.2544	8.1745	8.6357	0	543	79	0.961130371139249	0.0525945332540456	0.961130371139249	389.131135389951	0	21.2938546684278						2414	53	6	NaN	NaN	NaN	2.7664E-07	1	11621	122.51	93.199	1	4442800			4704	579;700	3989	4082	4704	4704		
ELISNASDALEK	12	Unmodified	_ELISNASDALEK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.332807	1288.65106	1.914	0.0012351	0.50113	0.00032339	2.4151	0.0015585	645.333521570878	8.4229	0.28373	8.4229	8.352	8.6357	0	522	52	0.975277694896658	0.0343435388719882	0.975277694896658	394.812906254599	0	13.9029862613173						871	32	5	NaN	NaN	NaN	2.7561E-07	1	12020	136.94	80.927	1	551390			4705	1608	3990	4083	4705	4705		
ELISNSSDALDK	12	Unmodified	_ELISNSSDALDK_			0	0	0	P07900;Q14568	P07900	P07900	HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.322439	1290.63033	2.3989	0.0015505	1.5302	0.00098903	3.9292	0.0025395	646.323568854613	6.7644	0.52321	6.7644	6.6313	7.1545	0	540	70	0.963152256458504	0.0464969566450577	0.963152256458504	389.897928340642	0	18.8226388387574						1817	60	5	NaN	NaN	NaN	1.8147E-07	1	12089	133.76	73.048	1	2950500			4706	567	3991	4084	4706	4706		
ELLALDSVDPEGR	13	Unmodified	_ELLALDSVDPEGR_			0	0	0	O95817	O95817	O95817	BAG3	BAG family molecular chaperone regulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.364638	1412.71472	1.2756	0.0009023	4.1617	0.0029439	5.4373	0.0038462	707.367283486718	13.096	0.31921	13.096	12.91	13.23	0	456	67	1.01965166402748	0.0443371902171737	1.01965166402748	412.391739697027	0	17.9318993456235						977	37	4	NaN	NaN	NaN	8.0947E-05	1	15855	64.906	47.436	1	243810			4707	456	3992	4085	4707	4707		
ELLAVPDNYK	10	Unmodified	_ELLAVPDNYK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.311146	1160.60774	1.2188	0.00070852	1.8164	0.0010559	3.0352	0.0017644	581.312099533804	10.073	0.23938	10.073	9.9484	10.188	0	564	61	0.946969335010767	0.0404965510493797	0.946969335010767	383.801269075855	0	16.4130211098867						761	28	4	NaN	NaN	NaN	5.8999E-05	1	8360	106.93	82.075	1	281390			4708	3450	3993	4086	4708	4708		
ELLDLAMQNAWFR	13	Unmodified	_ELLDLAMQNAWFR_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.90595	1605.79735	0.96794	0.00077813	0.058101	4.6708E-05	1.026	0.00082484	804.407507108265	18.94	0.088666	18.94	18.878	18.967	0	372	22	1.07593298845566	0.0140441447605724	1.07593298845566	434.64675168645	0	5.67344060075595						153	11	4	NaN	NaN	NaN	0.04099	1	21775	34.953	32.816	1	35192			4709	2189	3994	4087	4709	4709		
ELLDLLYK	8	Unmodified	_ELLDLLYK_			0	0	0	P00813	P00813	P00813	ADA	Adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.794601	1005.57465	-1.1215	-0.00056499	-1.6067	-0.00080942	-2.7281	-0.0013744	503.793615396063	15.659	0.10639	15.659	15.606	15.712	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	351.53235166592	0	7.43779207173185						201	13	3	NaN	NaN	NaN	0.01958	1	4415	29.102	10.699	1	54370			4710	486	3995	4088	4710	4710		
ELLDTELDLYK	11	Unmodified	_ELLDTELDLYK_			0	0	0	Q5T8P6	Q5T8P6	Q5T8P6	RBM26	RNA-binding protein 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.353208	1350.69186	1.1284	0.0007632	1.5666	0.0010596	2.695	0.0018228	676.354474017056	14.365	0.133	14.365	14.311	14.444	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	412.575280425455	0	8.1488567080907						193	16	2	NaN	NaN	NaN	0.013276	1	13906	47.561	33.566	1	56438			4711	1995	3996	4089	4711	4711		
ELLDTVNNVFK	11	Unmodified	_ELLDTVNNVFK_			0	0	0	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.34826	1290.68197	0.96466	0.0006235	-9.7528	-0.0063037	-8.7881	-0.0056802	646.342547348967	14.639	0.23052	14.639	14.506	14.737	0	534	64	0.967195187796614	0.0424302486818954	0.967195187796614	391.534446234254	0	17.1763715647653						513	27	3	NaN	NaN	NaN	0.030535	1	12097	33.426	0	1	143360			4712	2747	3997	4090	4712	4712		
ELLDTVNNVFK	11	Unmodified	_ELLDTVNNVFK_			0	0	0	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.34826	1290.68197	1.2247	0.00079157	-1.4236	-0.00092011	-0.19888	-0.00012855	646.347378693734	14.551	0.088652	14.551	14.506	14.595	0	522	34	0.975277694896658	0.0222161383936255	0.975277694896658	394.806325840429	0	8.99340979440643						265	11	4	NaN	NaN	NaN	0.00069378	1	12100	78.816	42.605	1	104880			4713	2747	3997	4090	4713	4713		
ELLELEALSMAVESTGTAK	19	Unmodified	_ELLELEALSMAVESTGTAK_			0	0	0	Q14764	Q14764	Q14764	MVP	Major vault protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.513913	1991.01327	0.52074	0.00051892	2.041	0.0020339	2.5618	0.0025528	996.516758672871	19.321	0.070919	19.321	19.277	19.348	0	195	22	1.19381749893585	0.0139306072345817	1.19381749893585	481.469979878461	0	5.61825336863257						77	9	2	NaN	NaN	NaN	0.059122	1	31479	29.98	23.603	1	15069			4714	1774	3998	4091	4714	4714		
ELLELLGFK	9	Unmodified	_ELLELLGFK_			0	0	0	Q8NEC7	Q8NEC7	Q8NEC7	GSTCD	Glutathione S-transferase C-terminal domain-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.3157	1060.61685	-0.83393	-0.00044308	-1.291	-0.00068594	-2.125	-0.001129	531.314839348761	18.452	0.062122	18.452	18.426	18.488	0	669	25	0.875957769340875	0.0162683841309829	0.875957769340875	355.413479069231	0	6.60077826260738						84	8	2	NaN	NaN	NaN	0.01941	1	5753	33.396	22.568	1	17105			4715	2310	3999	4092	4715	4715		
ELLEQISAFDNVPR	14	Unmodified	_ELLEQISAFDNVPR_			0	0	0	Q9NX58	Q9NX58	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.925394	1629.83624	2.1501	0.0017543	-2.0698	-0.0016888	0.080344	6.5555E-05	815.925432566121	15.429	0.2218	15.429	15.322	15.544	0	366	79	1.07994477139643	0.0521244755245256	1.07994477139643	436.212375608366	0	21.0541704521545						1049	26	3	NaN	NaN	NaN	8.0098E-06	1	22484	106.11	77.466	1	321000			4716	3099	4000	4093	4716	4716		
ELLESFDSALQSAK	14	Unmodified	_ELLESFDSALQSAK_			0	0	0	A6NKT7;Q7Z3J3;Q99666;O14715;P0DJD0;P0DJD1	A6NKT7	A6NKT7	RGPD3;RGPD4;RGPD5;RGPD8;RGPD1;RGPD2	RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.390853	1536.76715	1.6264	0.0012513	7.2388	0.0055694	8.8652	0.0068208	769.396875047438	9.2745	0.10644	9.2745	9.2213	9.3278	0	402	52	1.05585747106793	0.0341637123767462	1.05585747106793	426.700585926036	0	13.8064809768517						250	13	3	NaN	NaN	NaN	0.05766	1	19634	29.755	6.8572	1	70157			4717	19	4001	4094	4717	4717		
ELLESISPALLSYLQEHAQEVVLDK	25	Unmodified	_ELLESISPALLSYLQEHAQEVVLDK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	942.170807	2823.49059	0.84285	0.00079411	-1.6544	-0.0015587	-0.8115	-0.00076457	942.503161518061	19.969	0.017719	19.969	19.969	19.986	0	411	43	1.04982941439551	0.028132878019673	1.04982941439551	633.799529229338	0	16.9842877330715						94	3	4	NaN	NaN	NaN	0.06815	1	37943	12.183	12.155	1	19315			4718	1842	4002	4095	4718	4718		
ELLESNFTLVGDDGTNK	17	Unmodified	_ELLESNFTLVGDDGTNK_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.45217	1850.88979	2.0314	0.001882	4.9112	0.00455	6.9426	0.006432	926.957570570915	13.992	0.22167	13.992	13.824	14.045	0	246	58	1.1599488233373	0.0379104952093297	1.1599488233373	468.055754392687	0	15.2974209530652						283	26	2	NaN	NaN	NaN	0.019794	1	28522	38.14	9.009	1	169350			4719	2468	4003	4096	4719	4719		
ELLFHHEWVVK	11	Unmodified	_ELLFHHEWVVK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.59435	1435.76122	-1.8865	-0.00090477	-0.41641	-0.00019971	-2.3029	-0.0011045	479.594221744151	9.975	0.088651	9.975	9.9307	10.019	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	480.603058331399	0	9.92564256885396						169	11	3	NaN	NaN	NaN	0.018789	1	16565	22.898	13.921	1	50857			4720	2448	4004	4097	4720	4720		
ELLFHPALFEVPSLK	15	Unmodified	_ELLFHPALFEVPSLK_			0	0	0	Q9UHY1	Q9UHY1	Q9UHY1	NRBP1	Nuclear receptor-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.662541	1738.96579	-0.77871	-0.00045217	-0.58351	-0.00033882	-1.3622	-0.00079099	580.996559087184	17.548	0.10643	17.548	17.486	17.592	0	648	58	0.890187667287968	0.0386347449867347	0.890187667287968	539.060406727577	0	23.3955851239941						453	13	3	NaN	NaN	NaN	0.0019127	1	25576	55.578	53.277	1	104830			4721	3226	4005	4098	4721	4721		
ELLFLSNANPSLLER	15	Unmodified	_ELLFLSNANPSLLER_			0	0	0	P51398	P51398	P51398	DAP3	28S ribosomal protein S29, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.469969	1714.92539	1.5204	0.0013052	-0.26738	-0.00022954	1.2531	0.0010757	858.469472394413	17.122	0.15961	17.122	17.069	17.229	0	279	61	1.13799159301878	0.0399689530119671	1.13799159301878	459.466430259829	0	16.1375464232698						651	19	4	NaN	NaN	NaN	3.2378E-08	1	24920	130.99	98.443	1	216890			4722	1183	4006	4099	4722	4722		
ELLGQGLLLR	10	Unmodified	_ELLGQGLLLR_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.345323	1110.67609	0.66287	0.00036879	-0.7927	-0.00044102	-0.12983	-7.2229E-05	556.34498507785	14.631	0.18621	14.631	14.568	14.755	0	606	43	0.918606045818476	0.0283947491785544	0.918606045818476	372.50229277468	0	11.5143038954739						600	22	4	NaN	NaN	NaN	4.7901E-10	1	7016	150.88	120.32	1	496540			4723	21	4007	4100	4723	4723		
ELLHSQNTWLNTELK	15	Unmodified	_ELLHSQNTWLNTELK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.319614	1824.93701	-0.69212	-0.00042173	-0.59523	-0.00036268	-1.2874	-0.00078441	609.319066850141	11.678	0.079802	11.678	11.642	11.722	0	687	49	0.863749705078866	0.03255936673099	0.863749705078866	522.855979460028	0	19.7092508195713						349	10	4	NaN	NaN	NaN	2.721E-05	1	27856	112.7	108.97	1	111410			4724	667	4008	4101	4724	4724		
ELLHSQNTWLNTELK	15	Unmodified	_ELLHSQNTWLNTELK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.475783	1824.93701	1.3556	0.0012383	0.39171	0.00035782	1.7473	0.0015961	913.47695362282	11.678	0.097532	11.678	11.642	11.74	0	201	43	1.18983705239708	0.0278746128945804	1.18983705239708	480.166879884226	0	11.2489906702826						339	12	4	NaN	NaN	NaN	0.0046134	1	27858	35.45	29.422	1	99186			4725	667	4008	4101	4725	4725		
ELLIFNK	7	Unmodified	_ELLIFNK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	438.763104	875.511654	-3.5627	-0.0015632	-0.28971	-0.00012712	-3.8524	-0.0016903	438.763013046072	11.562	0.12422	11.562	11.518	11.642	0	789	28	0.794378096728713	0.0184026828244152	0.794378096728713	323.185088489381	0	7.48695451390535						146	15	2	NaN	NaN	NaN	0.059248	1	1946	42.229	21.57	1	40501			4726	611	4009	4102	4726	4726		
ELLIHER	7	Unmodified	_ELLIHER_			0	0	0	Q96BN8	Q96BN8	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.261259	908.507966	0.35106	0.00015982	-0.44853	-0.0002042	-0.097467	-4.4373E-05	455.26107508071	4.4056	0.1596	4.4056	4.3435	4.5031	0	735	43	0.831145085810763	0.0285687183645899	0.831145085810763	337.953790622613	0	11.616391445213						227	19	3	NaN	NaN	NaN	0.009921	1	2484	70.67	4.5826	1	50084			4727	2484	4010	4103	4727	4727		
ELLIIGGVAAR	11	Unmodified	_ELLIIGGVAAR_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.345323	1110.67609	0.47669	0.0002652	0.041629	2.316E-05	0.51832	0.00028836	556.345170008652	13.026	0.16845	13.026	12.981	13.15	0	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	387.285897568094	0	8.20288464333947						316	20	3	NaN	NaN	NaN	0.00060562	1	7017	99.305	75.729	1	99708			4728	2404	4011	4104	4728	4728		
ELLIQIFSTPR	11	Unmodified	_ELLIQIFSTPR_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.88227	1315.74999	0.78269	0.0005157	-0.62714	-0.00041321	0.15555	0.00010249	658.881716087416	17.69	0.17734	17.69	17.637	17.814	0	501	100	0.98941132619024	0.0666208451053777	0.98941132619024	400.447003916543	0	26.9636268704965						1116	21	4	NaN	NaN	NaN	1.1907E-11	1	12858	159.11	96.232	1	381310			4729	2348	4012	4105	4729	4729		
ELLITDLLPDNR	12	Unmodified	_ELLITDLLPDNR_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.393199	1410.77184	1.3114	0.00092637	-1.2707	-0.00089758	0.040749	2.8785E-05	706.39238871128	17.77	0.24826	17.77	17.637	17.885	0	444	58	1.02770517576159	0.0382568380923556	1.02770517576159	415.654503410842	0	15.4729463414087						714	29	3	NaN	NaN	NaN	0.0034503	1	15789	62.271	46.689	1	179960			4730	1540	4013	4106	4730	4730		
ELLITDLLPDNRK	13	Unmodified	_ELLITDLLPDNRK_			0	0	1	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.962879	1538.86681	-1.7634	-0.0009063	-0.25693	-0.00013205	-2.0203	-0.0010384	513.962559862108	15.402	0.15073	15.402	15.304	15.455	0	768	16	0.808687310729125	0.0102166013613212	0.808687310729125	490.209852053067	0	6.19309660900069						142	18	2	NaN	NaN	NaN	0.0035748	1	19702	53.028	45.026	1	32521			4731	1540	4014	4107	4731	4731		
ELLLEECWGK	10	Unmodified	_ELLLEECWGK_			0	0	0	Q8NEX6	Q8NEX6	Q8NEX6	WFDC11	Protein WFDC11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.815738	1275.61692	0.95953	0.00061297	2.5605	0.0016357	3.52	0.0022486	638.817768198355	9.443	0.25718	9.443	9.2923	9.5494	0	549	64	0.957085760909907	0.0424596140677734	0.957085760909907	387.490402557712	0	17.1904061470154						437	30	3	NaN	NaN	NaN	0.016427	1	11641	33.396	7.1725	1	304980			4732	2313	4015	4108	4732	4732		
ELLLQPVTISR	11	Unmodified	_ELLLQPVTISR_			0	0	0	P59998	P59998	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.88227	1267.74999	0.94087	0.00059734	-0.56075	-0.00035601	0.38012	0.00024133	634.881843264214	13.123	0.15962	13.123	13.07	13.23	0	522	67	0.975277694896658	0.04447227026681	0.975277694896658	394.881934014211	0	18.0064572222391						629	19	4	NaN	NaN	NaN	3.3914E-05	1	11451	90.263	80.175	1	211230			4733	1301	4016	4109	4733	4733		
ELLNALFSNPMDDNLICAVK	20	Unmodified	_ELLNALFSNPMDDNLICAVK_			0	0	0	Q9H074	Q9H074	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1139.06632	2276.11809	0.005963	6.7923E-06	-0.776	-0.00088392	-0.77004	-0.00087713	1139.56766085803	19.898	0.03547	19.898	19.88	19.915	0	69	43	1.27715511956461	0.0277069358040583	1.27715511956461	514.633347741189	0	11.164589884237						89	5	3	NaN	NaN	NaN	0.00042866	1	35431	65.173	62.427	1	13957			4734	2838	4017	4110	4734	4734		
ELLNETEEEINK	12	Unmodified	_ELLNETEEEINK_			0	0	0	O14777	O14777	O14777	NDC80	Kinetochore protein NDC80 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.859386	1459.70422	1.3938	0.0010186	-8.5762	-0.006268	-7.1824	-0.0052493	730.854202169364	8.7422	0.31069	8.7422	8.6623	8.973	0	483	58	1.00151498427745	0.0382885589296732	1.00151498427745	404.930087006291	0	15.4807364264486						649	36	4	NaN	NaN	NaN	4.6955E-05	1	17248	120.65	69.199	1	149520			4735	120	4018	4111	4735	4735		
ELLNPVVEFVSHPSTTCR	18	Unmodified	_ELLNPVVEFVSHPSTTCR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.685968	2084.03607	0.50303	0.00034995	1.0368	0.00072126	1.5398	0.0010712	696.020749934641	14.888	0.23055	14.888	14.781	15.012	0	504	88	0.987393073566096	0.0585536707946369	0.987393073566096	597.141100110389	0	35.4112301674663						1318	27	5	NaN	NaN	NaN	5.8842E-07	1	33083	95.345	79.817	1	537630			4736	1465	4019	4112	4736	4736		
ELLNVTPEDWDFCCK	15	Unmodified	_ELLNVTPEDWDFCCK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.424044	1924.83353	1.8008	0.0017349	0.56581	0.00054512	2.3666	0.00228	963.926508825234	16.049	0.14186	16.049	15.987	16.129	0	267	43	1.14597988355104	0.0279513333515433	1.14597988355104	462.2869392548	0	11.2755350496518						561	17	5	NaN	NaN	NaN	1.2987E-06	1	30166	112.7	103.9	1	149700			4737	2001	4020	4113	4737	4737		
ELLPLIYHHLLR	12	Unmodified	_ELLPLIYHHLLR_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.953561	1515.89257	2.0554	0.00156	0.79234	0.00060135	2.8478	0.0021613	758.954221808364	14.045	0.21281	14.045	13.912	14.125	0	327	46	1.10599442759226	0.0300366027940016	1.10599442759226	447.017259525979	0	12.1400972115883						721	25	4	NaN	NaN	NaN	4.505E-05	1	19022	88.181	68.857	1	232980			4738	1666	4021	4114	4738	4738		
ELLPVLISAMK	11	Unmodified	_ELLPVLISAMK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.364867	1212.71518	0.43154	0.0002621	-1.7047	-0.0010354	-1.2732	-0.00077329	607.364093729286	17.601	0.23942	17.601	17.513	17.752	0	570	88	0.942920803299286	0.0586997044173638	0.942920803299286	381.967537716354	0	23.7786476685271						1148	28	5	NaN	NaN	NaN	0.06009	1	9817	33.723	8.8725	1	479090			4739	753	4022	4115	4739	4739		
ELLQQMER	8	Unmodified	_ELLQQMER_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.768591	1045.52263	0.71678	0.00037542	0.94244	0.00049362	1.6592	0.00086905	523.769784010412	7.1457	0.1862	7.1457	7.0925	7.2787	0	657	34	0.884090832094921	0.0223581674407913	0.884090832094921	358.779774113512	0	9.07334175719399						332	22	3	NaN	NaN	NaN	0.00025041	1	5365	105.04	48.949	1	119600			4740	233	4023	4116	4740	4740		
ELLQSFDSALQSVK	14	Unmodified	_ELLQSFDSALQSVK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.914495	1563.81444	1.9216	0.0015044	-0.04789	-3.7494E-05	1.8737	0.0014669	782.914433412865	16.085	0.11526	16.085	16.032	16.147	0	339	61	1.09798411722691	0.040046054292028	1.09798411722691	443.656607666948	0	16.1811963569377						418	14	4	NaN	NaN	NaN	1.0127E-11	1	20471	192.95	152.44	1	128110			4741	1151	4024	4117	4741	4741		
ELLSNVDEGIYQLEK	15	Unmodified	_ELLSNVDEGIYQLEK_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.448899	1748.88325	1.9047	0.0016674	2.8908	0.0025308	4.7955	0.0041982	875.450467165909	15.038	0.1596	15.038	14.967	15.127	0	294	52	1.12800004657306	0.0339665951041765	1.12800004657306	455.361404617592	0	13.7119466472584						426	19	4	NaN	NaN	NaN	0.00059862	1	25860	81.48	70.509	1	129200			4742	2449	4025	4118	4742	4742		
ELLSNWYHFLVTR	13	Unmodified	_ELLSNWYHFLVTR_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.963102	1676.86748	-1.8434	-0.0010323	1.5543	0.00087036	-0.28912	-0.0001619	560.298305102825	18.186	0.079812	18.186	18.151	18.231	0	717	22	0.84338031290707	0.0142694733102946	0.84338031290707	510.86519720077	0	8.64352319475825						132	10	3	NaN	NaN	NaN	0.0038087	1	23821	38.1	35.429	1	31848			4743	2772	4026	4119	4743	4743		
ELLTEFGYK	9	Unmodified	_ELLTEFGYK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.28714	1098.55973	-0.37114	-0.00020423	0.61602	0.00033899	0.24488	0.00013475	550.28722652908	11.899	0.18625	11.899	11.828	12.015	0	654	103	0.886123392477847	0.0690735991335218	0.886123392477847	359.378875313244	0	28.013697168099						1089	22	4	NaN	NaN	NaN	0.00086819	1	6667	60.589	38.203	1	452210			4744	1131	4027	4120	4744	4744		
ELLTSFGPLK	10	Unmodified	_ELLTSFGPLK_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.818607	1103.62266	0.26924	0.00014884	0.46656	0.00025792	0.73581	0.00040677	552.818170188995	13.673	0.22164	13.673	13.62	13.841	-1.7764E-15	630	76	0.902373728295776	0.0507858560076192	0.902373728295776	365.94861196854	0	20.5956943679223						883	26	5	NaN	NaN	NaN	0.00087177	1	6825	79.059	23.044	1	651340			4745	850	4028	4121	4745	4745		
ELLTTMGDRFTDEEVDELYR	20	Unmodified	_ELLTTMGDRFTDEEVDELYR_			0	0	1	P19105;O14950	P19105	P19105	MYL12A;MYL12B	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	811.38105	2431.12132	1.3059	0.0010596	1.0908	0.00088503	2.3967	0.0019446	811.716021265456	15.207	0.1596	15.207	15.154	15.313	0	513	37	0.981336640919867	0.0242341119852805	0.981336640919867	592.917705317171	0	14.6421049307229						528	19	6	NaN	NaN	NaN	7.8335E-32	1	36489	191.49	183.08	1	212860			4746	128	4029	4122	4746	4746		
ELLVDCYKPTEAFISGLLDK	20	Unmodified	_ELLVDCYKPTEAFISGLLDK_			0	0	1	Q96C90	Q96C90	Q96C90	PPP1R14B	Protein phosphatase 1 regulatory subunit 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.067855	2310.18174	0.29352	0.00022633	-1.0261	-0.00079116	-0.73254	-0.00056484	771.401378518595	18.905	0.097498	18.905	18.86	18.958	0	570	55	0.942920803299286	0.0364418454762743	0.942920803299286	569.876512847417	0	22.0244921408865						430	12	5	NaN	NaN	NaN	1.4266E-07	1	35720	106.58	98.21	1	107010			4747	2492	4030	4123	4747	4747		
ELLVLPIYANLPSDMQAR	18	Unmodified	_ELLVLPIYANLPSDMQAR_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.0508	2042.08705	0.81669	0.0008347	-0.27733	-0.00028344	0.53936	0.00055125	1022.55262632795	19.02	0.062069	19.02	18.993	19.055	0	183	58	1.20177511391933	0.0377649812720997	1.20177511391933	484.595380322237	0	15.2280865616625						252	8	4	NaN	NaN	NaN	2.71E-10	1	32388	99.668	75.864	1	43410			4748	248	4031	4124	4748	4748		
ELLVPLTSSMYVPGK	15	Unmodified	_ELLVPLTSSMYVPGK_			0	0	0	Q99471	Q99471	Q99471	PFDN5	Prefoldin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.447117	1632.87968	1.8129	0.0014819	-0.44322	-0.00036231	1.3697	0.0011196	817.447316834768	15.828	0.18624	15.828	15.766	15.952	0	318	82	1.11199926528787	0.0540510278217314	1.11199926528787	449.152797021388	0	21.8320021297197						1183	22	5	NaN	NaN	NaN	0.00022308	1	22579	88.734	68.551	1	531310			4749	2642	4032	4125	4749	4749		
ELLYFLDSCEPEFK	14	Unmodified	_ELLYFLDSCEPEFK_			0	0	0	O43747	O43747	O43747	AP1G1	AP-1 complex subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.421296	1788.82804	1.5978	0.0014307	1.7421	0.0015599	3.34	0.0029907	895.92370629815	17.53	0.11529	17.53	17.477	17.592	0	276	82	1.13998907770044	0.0538950585976328	1.13998907770044	460.120421397275	0	21.7530304090247						701	14	3	NaN	NaN	NaN	3.3203E-05	1	26940	68.548	52.261	1	200520			4750	225	4033	4126	4750	4750		
ELLYGGTSPTAETILK	16	Unmodified	_ELLYGGTSPTAETILK_			0	0	0	O95793	O95793	O95793	STAU1	Double-stranded RNA-binding protein Staufen homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.95636	1691.89817	1.3579	0.0011501	2.0443	0.0017315	3.4023	0.0028816	847.459600928361	13.221	0.097526	13.221	13.176	13.274	0	189	34	1.1977968526266	0.0218849460359061	1.1977968526266	483.665685641379	0	8.83705563799879						217	12	4	NaN	NaN	NaN	0.00010295	1	24263	80.623	61.3	1	49635			4751	453	4034	4127	4751	4751		
ELMDEEDVLQECK	13	Unmodified	_ELMDEEDVLQECK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.355296	1636.69604	1.9778	0.0016205	0.94809	0.00077682	2.9259	0.0023974	819.356329116422	10.693	0.11533	10.693	10.658	10.773	0	369	37	1.07793901817685	0.0240707016465822	1.07793901817685	435.38681816537	0	9.72231826123016						408	14	4	NaN	NaN	NaN	0.028341	1	22678	58.476	53.325	1	124580			4752	1962	4035	4128	4752	4752		
ELMGEEILGASLSAPLTSYK	20	Unmodified	_ELMGEEILGASLSAPLTSYK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.04284	2108.07112	1.2164	0.0012833	0.29796	0.00031436	1.5143	0.0015977	1055.54454443243	18.541	0.088656	18.541	18.506	18.594	0	132	61	1.23554629282893	0.039684517663034	1.23554629282893	498.107709377501	0	15.99872405074						452	11	5	NaN	NaN	NaN	2.8518E-06	1	33445	84.58	77.724	1	91752			4753	3161	4036	4129	4753	4753		
ELMTHHVHTYGLIMGGSNR	19	Unmodified	_ELMTHHVHTYGLIMGGSNR_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	539.014929	2152.03061	-0.7239	-0.00039019	0.82362	0.00044394	0.099715	5.3748E-05	539.266259026395	7.5003	0.044395	7.5003	7.4826	7.527	-8.8818E-16	723	10	0.839303037468863	0.00611718824365159	0.839303037468863	676.631724582519	0	4.93157232384181						37	6	3	NaN	NaN	NaN	0.047359	1	34060	21.668	21.149	1	4411.8			4754	3072	4037	4130	4754	4754		
ELNELVSAIEEHFFQPQK	18	Unmodified	_ELNELVSAIEEHFFQPQK_			0	0	0	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.032021	2157.07423	0.25757	0.00018546	-0.29155	-0.00020993	-0.033984	-2.447E-05	720.366096397809	19.907	0.053215	19.907	19.889	19.942	0	558	28	0.951016745717027	0.0182120890547127	0.951016745717027	575.013164504179	0	11.0115736728554						137	7	5	NaN	NaN	NaN	6.9203E-05	1	34134	79.235	67.556	1	39984			4755	2532	4038	4131	4755	4755		
ELNLILTTGGTGFAPR	16	Unmodified	_ELNLILTTGGTGFAPR_			0	0	0	Q9NQX3	Q9NQX3	Q9NQX3	GPHN	Gephyrin;Molybdopterin adenylyltransferase;Molybdopterin molybdenumtransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.456862	1658.89917	1.7645	0.0014653	1.0392	0.00086304	2.8037	0.0023283	830.457598837948	15.42	0.088683	15.42	15.367	15.455	-1.7764E-15	171	28	1.20972836110953	0.0178911243069704	1.20972836110953	488.562524707854	0	7.22553355139871						145	11	3	NaN	NaN	NaN	0.0013845	1	23306	63.908	54.647	1	25247			4756	3006	4039	4132	4756	4756		
ELNLSFCEIK	10	Unmodified	_ELNLSFCEIK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.815738	1251.61692	0.84389	0.00052897	2.5537	0.0016007	3.3976	0.0021297	626.817511455609	13.008	0.12414	13.008	12.946	13.07	0	546	43	0.959108205975751	0.0283161971552985	0.959108205975751	388.388960997047	0	11.4665877364124						320	15	4	NaN	NaN	NaN	0.023122	1	10960	56.202	33.149	1	121090			4757	1075	4040	4133	4757	4757		
ELNLVLSVR	9	Unmodified	_ELNLVLSVR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.816399	1041.61824	1.1568	0.00060362	-1.705	-0.00088969	-0.54822	-0.00028607	521.815775132872	12.857	0.15076	12.857	12.822	12.972	0	657	40	0.884090832094921	0.0264269571469923	0.884090832094921	358.797265943494	0	10.7250518016103						274	18	3	NaN	NaN	NaN	0.00010345	1	5269	114.64	81.243	1	83394			4758	1127	4041	4134	4758	4758		
ELNMIIMLPDETTDLR	16	Oxidation (M)	_ELNMIIM(Oxidation (M))LPDETTDLR_	ELNMIIM(1)LPDETTDLR	ELNM(-37)IIM(37)LPDETTDLR	0	1	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.476276	1918.938	0.8057	0.00077385	1.9944	0.0019156	2.8001	0.0026894	960.980141045128	17.158	0.13297	17.158	17.087	17.22	0	171	43	1.20972836110953	0.0278363710639469	1.20972836110953	488.013726320459	0	11.2294062095859						361	16	4	NaN	NaN	NaN	1.0209E-05	1	30036	59.67	47.652	2	71382			4759	961	4042	4135	4759	4759	343	
ELNNTCEPVVTQPK	14	Unmodified	_ELNNTCEPVVTQPK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.901062	1627.78757	2.7737	0.0022603	-1.5441	-0.0012583	1.2296	0.001002	814.89956482122	5.8332	0.2572	5.8332	5.7623	6.0195	0	384	88	1.06790610341098	0.0582391281870487	1.06790610341098	431.35427822338	0	23.5242565083602						1078	30	3	NaN	NaN	NaN	1.3242E-07	1	22404	131.54	121.29	1	666570			4760	2415	4043	4136	4760	4760		
ELNNYIMR	8	Unmodified	_ELNNYIMR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.763309	1051.51206	1.0642	0.00056057	0.41055	0.00021626	1.4747	0.00077683	526.7634880387	7.864	0.19509	7.864	7.7576	7.9527	0	633	43	0.900343422309015	0.0284302042688603	0.900343422309015	365.348314566984	0	11.5366280855198						488	23	4	NaN	NaN	NaN	0.0088013	1	5503	73.637	37.426	1	135240			4761	3357	4044	4137	4761	4761		
ELNQVMEQLGDAR	13	Unmodified	_ELNQVMEQLGDAR_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.867022	1501.71949	0.99266	0.00074635	-1.0327	-0.00077648	-0.040079	-3.0134E-05	751.866174398535	11.722	0.16846	11.722	11.642	11.811	0	432	46	1.035754240522	0.0301860841315895	1.035754240522	418.663562252623	0	12.2015561400158						441	20	4	NaN	NaN	NaN	4.6931E-08	1	18567	168.05	134.32	1	160790			4762	1764	4045	4138	4762	4762		
ELPAAVAPAGPASLAR	16	Unmodified	_ELPAAVAPAGPASLAR_			0	0	0	O95336	O95336	O95336	PGLS	6-phosphogluconolactonase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.919915	1489.82528	1.7877	0.0013335	0.34016	0.00025373	2.1279	0.0015872	745.920197617255	10.543	0.1685	10.543	10.48	10.649	0	423	40	1.04178812298108	0.0261468289709272	1.04178812298108	421.133220102121	0	10.5696139522854						460	20	3	NaN	NaN	NaN	1.6605E-06	1	18232	97.594	66.676	1	138240			4763	421	4046	4139	4763	4763		
ELPAWVSFPDVEK	13	Unmodified	_ELPAWVSFPDVEK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.887749	1515.76095	1.1072	0.00084027	0.62198	0.00047201	1.7292	0.0013123	758.888840783153	16.59	0.11526	16.59	16.528	16.644	0	432	46	1.035754240522	0.0301694200551728	1.035754240522	418.628136903237	0	12.1937884635481						409	14	4	NaN	NaN	NaN	2.3148E-05	1	19007	112.93	89.872	1	189010			4764	2726	4047	4140	4764	4764		
ELPDLEDLMK	10	Unmodified	_ELPDLEDLMK_			0	0	0	Q9HC38	Q9HC38	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.802297	1201.59004	-0.041257	-2.4828E-05	-1.7318	-0.0010422	-1.7731	-0.001067	601.801790747897	16.475	0.19507	16.475	16.413	16.608	0	597	70	0.924688525662974	0.0466517682842764	0.924688525662974	374.620850557031	0	18.900121099821						829	23	5	NaN	NaN	NaN	0.00089278	1	9503	78.816	58.582	1	326990			4765	2958	4048	4141	4765	4765		
ELPDPQESIQR	11	Unmodified	_ELPDPQESIQR_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.330598	1310.64664	1.7355	0.0011391	-1.2991	-0.00085261	0.43649	0.00028648	656.329811050558	7.3319	0.27487	7.3319	7.1811	7.456	0	546	49	0.959108205975751	0.0323658503377906	0.959108205975751	388.198053403364	0	13.1000444158358						851	32	4	NaN	NaN	NaN	0.00064888	1	12670	63.397	28.617	1	248430		+	4766	37	4049	4142	4766	4766		
ELPDPSQRPLGEPSAGLGEYLK	22	Unmodified	_ELPDPSQRPLGEPSAGLGEYLK_			0	0	1	Q9HC52	Q9HC52	Q9HC52	CBX8	Chromobox protein homolog 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.072657	2352.19614	1.1515	0.000904	0.32505	0.00025519	1.4765	0.0011592	785.407139156073	12.972	0.11529	12.972	12.919	13.034	-1.7764E-15	516	25	0.979317271586824	0.0161583079199887	0.979317271586824	591.810405079152	0	9.76461360681139						296	14	5	NaN	NaN	NaN	0.0025191	1	36064	34.579	32.338	1	48367			4767	2959	4050	4143	4767	4767		
ELPDSVPQECTVR	13	Unmodified	_ELPDSVPQECTVR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.366855	1528.71916	2.1981	0.0016824	-2.6203	-0.0020055	-0.42217	-0.00032312	765.3656685573	7.456	0.18617	7.456	7.3496	7.5358	0	441	61	1.02971785871157	0.0402564573551203	1.02971785871157	416.156456304849	0	16.2694902244934						702	22	6	NaN	NaN	NaN	0.043603	1	19375	35.845	23.264	1	178100			4768	3136	4051	4144	4768	4768		
ELPEQLQEHAIEDK	14	Unmodified	_ELPEQLQEHAIEDK_			0	0	0	Q15424	Q15424	Q15424	SAFB	Scaffold attachment factor B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.917766	1677.82098	3.6372	0.003055	-1.9133	-0.001607	1.7239	0.0014479	839.916095063929	7.7309	0.18633	7.7309	7.6688	7.8552	0	312	37	1.11600111266355	0.0240110882362814	1.11600111266355	450.667617489894	0	9.69624474921727						555	22	4	NaN	NaN	NaN	0.0002301	1	23853	73.891	58.275	1	186720			4769	1846	4052	4145	4769	4769		
ELPPDQAEYCIAR	13	Unmodified	_ELPPDQAEYCIAR_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.369398	1560.72424	2.3964	0.0018724	-1.9498	-0.0015235	0.44656	0.00034893	781.36936284409	8.1745	0.42584	8.1745	8.068	8.4938	0	426	73	1.03977710643793	0.0482278126940738	1.03977710643793	420.144518076068	0	19.4874949609444						1131	49	4	NaN	NaN	NaN	0.059702	1	20357	25.588	11.81	1	408480			4770	221;671	4053	4146	4770	4770		
ELPPDQAEYCIAR	13	Unmodified	_ELPPDQAEYCIAR_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.369398	1560.72424	2.1671	0.0016933	-0.44842	-0.00035038	1.7187	0.0013429	781.369335539741	8.4761	0.28393	8.4761	8.4051	8.6891	0	423	61	1.04178812298108	0.0402009276493935	1.04178812298108	420.957107413562	0	16.2440575442595						694	33	3	NaN	NaN	NaN	0.059163	1	20358	32.051	16.903	1	290770			4771	221;671	4053	4146	4771	4771		
ELPQFATGENLPR	13	Unmodified	_ELPQFATGENLPR_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.380623	1470.74669	1.6174	0.001191	0.57125	0.00042066	2.1886	0.0016117	736.380705547092	11.261	0.21288	11.261	11.199	11.412	0	447	79	1.02569221487577	0.052326186179213	1.02569221487577	414.676094143281	0	21.1549022128809						614	25	3	NaN	NaN	NaN	2.0602E-05	1	17614	115.41	100.65	1	225080			4772	2816	4054	4147	4772	4772		
ELPTAFDYVEFTR	13	Unmodified	_ELPTAFDYVEFTR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.388113	1586.76167	1.2688	0.0010079	2.0372	0.0016184	3.306	0.0026263	794.389774385096	16.174	0.16849	16.174	16.094	16.262	0	426	67	1.03977710643793	0.0442149235181339	1.03977710643793	420.083871890216	0	17.8634210657496						494	20	3	NaN	NaN	NaN	3.8811E-06	1	21169	110.52	98.564	1	123510			4773	1703	4055	4148	4773	4773		
ELPTEPPYTAYVGNLPFNTVQGDIDAIFK	29	Unmodified	_ELPTEPPYTAYVGNLPFNTVQGDIDAIFK_			0	0	0	Q15056	Q15056	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1070.53956	3208.59685	1.7788	0.0019043	-1.3342	-0.0014283	0.44464	0.000476	1070.8724710111	20.111	0.035461	20.111	20.102	20.137	0	342	85	1.09598084995137	0.0560336291410517	1.09598084995137	661.272495422568	0	33.8085266465471						287	5	5	NaN	NaN	NaN	0.060912	1	38467	10.25	10.155	1	95433			4774	1804	4056	4149	4774	4774		
ELPTVTTNVQNSQDK	15	Unmodified	_ELPTVTTNVQNSQDK_			0	0	0	Q96B01	Q96B01	Q96B01	RAD51AP1	RAD51-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.420673	1672.82679	2.7362	0.0022913	-0.48399	-0.0004053	2.2522	0.001886	837.420240173476	6.8707	0.097532	6.8707	6.8175	6.9151	0	318	25	1.11199926528787	0.0160117991526911	1.11199926528787	449.06255337671	0	6.46610086545439						163	12	3	NaN	NaN	NaN	0.0042609	1	23697	52.863	48.881	1	33705			4775	2478	4057	4150	4775	4775		
ELPVLWHQCLLTLVQR	16	Unmodified	_ELPVLWHQCLLTLVQR_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.039905	2004.09789	-0.22291	-0.00014914	-0.8286	-0.00055437	-1.0515	-0.0007035	669.039509274731	17.646	0.062048	17.646	17.601	17.663	0	600	19	0.922661313351899	0.0121641171865265	0.922661313351899	558.140733845751	0	7.35837646471725						92	8	3	NaN	NaN	NaN	0.033204	1	31711	28.228	27.421	1	16074			4776	1709	4058	4151	4776	4776		
ELQCLTPR	8	Unmodified	_ELQCLTPR_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.763309	1015.51206	0.922	0.00046908	6.96	0.003541	7.882	0.0040101	508.767223770389	5.6026	0.19511	5.6026	5.5317	5.7268	0	666	43	0.877991458330206	0.0284696767536509	0.877991458330206	356.441337822308	0	11.5579366668775						370	23	3	NaN	NaN	NaN	0.026266	1	4639	47.349	20.893	1	86888			4777	1579	4059	4152	4777	4777		
ELQDAFSR	8	Unmodified	_ELQDAFSR_			0	0	0	Q99848	Q99848	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.237981	964.461409	-0.45541	-0.00022007	-1.8089	-0.00087412	-2.2643	-0.0010942	483.2388485736	6.3033	0.088731	6.3033	6.2411	6.3299	0	729	25	0.835224628594324	0.0163136366798808	0.835224628594324	339.319032309845	0	6.62759121577596						120	11	2	NaN	NaN	NaN	0.044662	1	3524	39.324	20.369	1	40045			4778	2680	4060	4153	4778	4778		
ELQDQLEAEQYFSTLYK	17	Unmodified	_ELQDQLEAEQYFSTLYK_			0	0	0	Q13464;O75116	Q13464;O75116	O75116	ROCK1;ROCK2	Rho-associated protein kinase 1;Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.00731	2104.00007	1.7326	0.0018245	-0.53153	-0.0005597	1.2011	0.0012648	1053.50806865424	16.475	0.1064	16.475	16.422	16.528	0	156	64	1.21966378336455	0.0417116239861886	1.21966378336455	491.710940742804	0	16.8161604451188						432	13	5	NaN	NaN	NaN	1.2005E-06	1	33370	97.084	90.562	1	108540			4779	301;1671	4061	4154	4779	4779		
ELQEESGLTVDALHK	15	Unmodified	_ELQEESGLTVDALHK_			0	0	0	P36639	P36639	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.925591	1667.83663	2.3918	0.0019969	-0.79462	-0.00066345	1.5971	0.0013335	834.925344134352	8.5116	0.070946	8.5116	8.4761	8.547	0	294	22	1.12800004657306	0.0139939408517145	1.12800004657306	455.535403022616	0	5.6513610129071						119	9	3	NaN	NaN	NaN	2.1653E-08	1	23577	98.167	79.66	1	20260			4780	989	4062	4155	4780	4780		
ELQEESGLTVDALHK	15	Unmodified	_ELQEESGLTVDALHK_			0	0	0	P36639	P36639	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.95282	1667.83663	0.52368	0.00029167	1.3337	0.00074278	1.8573	0.0010344	557.288132747647	8.5027	0.11528	8.5027	8.4672	8.5825	0	645	28	0.892219381832517	0.0182828962008553	0.892219381832517	540.472700061111	0	11.0750858766573						216	14	4	NaN	NaN	NaN	0.013224	1	23578	42.446	40.145	1	64889			4781	989	4062	4155	4781	4781		
ELQELQDSLNAER	13	Unmodified	_ELQELQDSLNAER_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.881184	1543.74781	2.4531	0.001896	-2.5573	-0.0019765	-0.10417	-8.0513E-05	772.879992539923	9.7268	0.15962	9.7268	9.6292	9.7889	0	414	43	1.04781950764076	0.0281406425229616	1.04781950764076	423.435168509163	0	11.3719372676077						405	19	4	NaN	NaN	NaN	2.1195E-11	1	19851	166.65	138	1	166110			4782	667	4063	4156	4782	4782		
ELQELVQYPVEHPDK	15	Unmodified	_ELQELVQYPVEHPDK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.643986	1822.91013	0.59549	0.00036244	0.9579	0.00058302	1.5534	0.00094546	608.644871423204	9.913	0.18617	9.913	9.842	10.028	0	660	64	0.882057989648486	0.0426778685344582	0.882057989648486	533.943050332365	0	25.8345274056794						854	22	6	NaN	NaN	NaN	4.9576E-12	1	27809	193.34	173.78	1	645620			4783	1265	4064	4157	4783	4783		
ELQELVQYPVEHPDK	15	Unmodified	_ELQELVQYPVEHPDK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.462341	1822.91013	2.3386	0.0021339	0.38361	0.00035003	2.7222	0.0024839	912.964121529933	9.9041	0.15074	9.9041	9.8598	10.01	0	261	97	1.14997238118939	0.063871255778525	1.14997238118939	464.083111220332	0	25.775898259913						754	18	5	NaN	NaN	NaN	4.3242E-17	1	27810	139.7	114.09	1	234990			4784	1265	4064	4157	4784	4784		
ELQEQMSR	8	Unmodified	_ELQEQMSR_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.742573	1019.47059	0.93845	0.00047931	-3.0533	-0.0015594	-2.1148	-0.0010801	511.239924168315	3.1375	0.23049	3.1375	3.0755	3.306	0	714	58	0.845418525735192	0.0387314421406671	0.845418525735192	343.199814894751	0	15.7231280941285						471	27	3	NaN	NaN	NaN	0.048445	1	4722	53.878	17.309	1	141020			4785	2112	4065	4158	4785	4785		
ELQNAPDAIPESGVEPPALDTAWVEATR	28	Unmodified	_ELQNAPDAIPESGVEPPALDTAWVEATR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	992.824358	2975.45125	1.1476	0.0011393	1.0752	0.0010675	2.2228	0.0022069	993.159975960704	17.14	0.133	17.14	17.069	17.202	0	360	34	1.08395544855938	0.0220602476695482	1.08395544855938	654.238129777918	0	13.3148047707537						340	16	4	NaN	NaN	NaN	1.6627E-06	1	38179	84.551	82.365	1	64371			4786	1626	4066	4159	4786	4786		
ELQNEVEK	8	Unmodified	_ELQNEVEK_			0	0	0	Q86U42	Q86U42	Q86U42	PABPN1	Polyadenylate-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.750921	987.48729	1.499	0.00074162	-0.37442	-0.00018524	1.1246	0.00055638	494.7507710962	2.9956	0.20396	2.9956	2.969	3.173	0	681	31	0.867820189810857	0.0203524260142245	0.867820189810857	352.445755222926	0	8.26568250130885						263	24	3	NaN	NaN	NaN	0.0013202	1	4002	84.368	37.019	1	55040			4787	2161	4067	4160	4787	4787		
ELQNFLSMFQK	11	Unmodified	_ELQNFLSMFQK_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.850113	1383.68567	0.65083	0.00045093	0.41054	0.00028444	1.0614	0.00073537	692.85022924119	17.743	0.1064	17.743	17.699	17.805	0	480	31	1.00353128488872	0.0201644018514301	1.00353128488872	405.954506180557	0	8.15702501684478						147	13	2	NaN	NaN	NaN	0.033427	1	14945	49.16	31.69	1	37926			4788	1592	4068	4161	4788	4788		
ELQQELQEYEVVTESEK	17	Unmodified	_ELQQELQEYEVVTESEK_			0	0	0	Q96A49	Q96A49	Q96A49	SYAP1	Synapse-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.99968	2079.98481	1.4973	0.0015587	0.71748	0.0007469	2.2148	0.0023056	1041.50207318897	13.221	0.11527	13.221	13.185	13.3	0	177	58	1.2057522832638	0.0377753473176443	1.2057522832638	486.139276200575	0	15.2303920615567						471	14	4	NaN	NaN	NaN	2.4606E-10	1	33022	111.38	105.99	1	128710			4789	2470	4069	4162	4789	4789		
ELQQQLVDAK	10	Unmodified	_ELQQQLVDAK_			0	0	0	Q9NUQ3	Q9NUQ3	Q9NUQ3	TXLNG	Gamma-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.319502	1170.62445	1.9949	0.0011696	-2.5101	-0.0014717	-0.51527	-0.00030211	586.318135482455	6.0195	0.15966	6.0195	5.9485	6.1081	0	567	31	0.944945209309785	0.0202454642733264	0.944945209309785	382.942434634801	0	8.20454699675378						221	19	2	NaN	NaN	NaN	0.0018946	1	8625	69.915	30.905	1	65754			4790	3054	4070	4163	4790	4790		
ELQSMADQEK	10	Unmodified	_ELQSMADQEK_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.771528	1177.5285	2.5055	0.0014777	0.48676	0.00028708	2.9922	0.0017647	589.770820128397	3.7583	0.17741	3.7583	3.714	3.8914	0	621	58	0.908462957275599	0.0385490956418131	0.908462957275599	368.132718757296	0	15.6210919450296						353	21	3	NaN	NaN	NaN	0.0010551	1	8811	58.916	35.34	1	123160			4791	2490	4071	4164	4791	4791		
ELQSMADQEQVSPAAIK	17	Unmodified	_ELQSMADQEQVSPAAIK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.956565	1843.89858	2.6417	0.0024382	-1.9241	-0.0017758	0.71765	0.00066236	922.955283364825	9.0528	0.1685	9.0528	8.973	9.1415	0	312	109	1.11600111266355	0.0719145047099541	1.11600111266355	450.334955169754	0	29.0193395751353						1242	20	4	NaN	NaN	NaN	1.1784E-25	1	28326	146.34	136.32	1	299320			4792	938	4072	4165	4792	4792		
ELQSMADQEQVSPAAIK	17	Oxidation (M)	_ELQSM(Oxidation (M))ADQEQVSPAAIK_	ELQSM(1)ADQEQVSPAAIK	ELQSM(60)ADQEQVSPAAIK	0	1	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.954023	1859.89349	2.187	0.002036	-2.7102	-0.0025231	-0.52326	-0.00048713	931.453578203108	7.0481	0.13308	7.0481	6.9771	7.1102	0	336	25	1.09998710857178	0.0160228284041832	1.09998710857178	443.844395726754	0	6.46520539692682						187	16	3	NaN	NaN	NaN	0.070237	1	28694	59.997	52.421	1	38223			4793	938	4072	4166	4793	4793	336	
ELQSQIQEAR	10	Unmodified	_ELQSQIQEAR_			0	0	0	Q9P2X0	Q9P2X0	Q9P2X0	DPM3	Dolichol-phosphate mannosyltransferase subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.312209	1200.60986	1.8973	0.0011409	-2.8851	-0.0017349	-0.9878	-0.00059397	601.310721772044	4.5297	0.13298	4.5297	4.4765	4.6095	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.338460529459	0	10.6827716829739						286	16	4	NaN	NaN	NaN	3.6282E-05	1	9480	105.36	59.869	1	154440			4794	3165	4073	4167	4794	4794		
ELQSQISDTSVVLSMDNSR	19	Unmodified	_ELQSQISDTSVVLSMDNSR_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.01006	2108.00556	3.5689	0.0037652	-2.7599	-0.0029117	0.80895	0.00085345	1055.50907086641	12.91	0.28376	12.91	12.822	13.105	0	174	94	1.20774045859593	0.0616335049417325	1.20774045859593	486.897958698085	0	24.847414467199						1711	33	6	NaN	NaN	NaN	1.3408E-45	1	33436	267.63	242.71	1	804110		+	4795	28	4074	4168	4795	4795		
ELQSQISDTSVVLSMDNSR	19	Oxidation (M)	_ELQSQISDTSVVLSM(Oxidation (M))DNSR_	ELQSQISDTSVVLSM(1)DNSR	ELQSQISDTSVVLSM(120)DNSR	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.00751	2124.00048	1.5345	0.0016312	0.4527	0.00048123	1.9872	0.0021124	1063.51026168537	10.658	0.097516	10.658	10.613	10.711	0	177	43	1.2057522832638	0.027844013131697	1.2057522832638	486.072460810337	0	11.2247002718702						352	12	4	NaN	NaN	NaN	8.4981E-14	1	33668	118.64	115.57	1	76754		+	4796	28	4074	4169	4796	4796	6	
ELQSVEQEVR	10	Unmodified	_ELQSVEQEVR_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.812042	1215.60953	1.7543	0.001068	-1.1243	-0.00068451	0.62998	0.00038354	608.811333991012	5.9396	0.25722	5.9396	5.8775	6.1347	0	576	85	0.938871150116794	0.0567030503260978	0.938871150116794	380.31687273169	0	22.9692080448808						723	30	3	NaN	NaN	NaN	4.9446E-05	1	9890	78.816	52.36	1	234970			4797	2466	4075	4170	4797	4797		
ELQVGIPVADEAGQR	15	Unmodified	_ELQVGIPVADEAGQR_			0	0	0	Q9BWM7	Q9BWM7	Q9BWM7	SFXN3	Sideroflexin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.415194	1580.81583	1.7591	0.0013922	-1.6157	-0.0012787	0.14339	0.00011348	791.41382312864	11.146	0.088678	11.146	11.101	11.19	0	399	22	1.0578662689527	0.014061585996056	1.0578662689527	427.406057786188	0	5.68125406129622						167	11	4	NaN	NaN	NaN	0.014244	1	21002	57.003	27.686	1	44277			4798	2781	4076	4171	4798	4798		
ELRDEEQTAESIK	13	Unmodified	_ELRDEEQTAESIK_			0	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.381017	1546.74748	2.9865	0.0023127	-2.5809	-0.0019986	0.40565	0.00031413	774.379168034737	4.9287	0.17731	4.9287	4.9021	5.0795	0	387	88	1.06589869032374	0.0582391281870487	1.06589869032374	430.733736286905	0	23.5346543811593						661	21	4	NaN	NaN	NaN	0.00024581	1	19942	86.838	74.881	1	180890			4799	1757	4077	4172	4799	4799		
ELRDEEQTAESIK	13	Unmodified	_ELRDEEQTAESIK_			0	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.58977	1546.74748	1.115	0.00057602	0.92946	0.00048015	2.0445	0.0010562	516.590352873612	4.9287	0.11525	4.9287	4.8933	5.0085	0	702	58	0.853568545818287	0.038677676741416	0.853568545818287	517.392466172428	0	23.4445594944889						325	14	4	NaN	NaN	NaN	3.8273E-05	1	19943	92.707	78.252	1	111970			4800	1757	4077	4172	4800	4800		
ELSAVTFPDIIR	12	Unmodified	_ELSAVTFPDIIR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.877185	1359.73982	0.28537	0.0001943	-1.0588	-0.00072091	-0.77342	-0.0005266	680.876216610445	15.899	0.1596	15.899	15.845	16.005	0	504	37	0.987393073566096	0.0242207100839708	0.987393073566096	399.495769084018	0	9.7996142182875						417	19	4	NaN	NaN	NaN	3.6849E-07	1	14204	126.29	112.3	1	170300			4801	1044	4078	4173	4801	4801		
ELSDFISYLQR	11	Unmodified	_ELSDFISYLQR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.851167	1369.68778	0.41853	0.00028705	0.85536	0.00058665	1.2739	0.0008737	685.851748193822	16.803	0.45222	16.803	16.732	17.184	0	492	73	0.995464410099171	0.048428051596847	0.995464410099171	402.731956164766	0	19.5923869853905						1816	52	6	NaN	NaN	NaN	3.7436E-39	1	14481	253.74	190.77	1	2893000			4802	904	4079	4174	4802	4802		
ELSDIAHR	8	Unmodified	_ELSDIAHR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.745973	939.477394	0.99628	0.00046899	2.457	0.0011566	3.4533	0.0016256	470.747143871911	3.5189	0.37252	3.5189	3.439	3.8115	0	726	52	0.837263974740672	0.0346640784311575	0.837263974740672	340.274624402888	0	14.0879180572504						1037	43	4	NaN	NaN	NaN	5.9053E-05	1	3057	117.62	77.859	1	1058000			4803	504	4080	4175	4803	4803		
ELSDPAGAIIYTSR	14	Unmodified	_ELSDPAGAIIYTSR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.885738	1491.75692	1.7245	0.001288	1.0313	0.00077023	2.7558	0.0020583	746.886775109782	11.42	0.26617	11.42	11.35	11.616	0	405	52	1.05384839605172	0.0341637123767462	1.05384839605172	426.003394420659	0	13.8102003030337						744	31	5	NaN	NaN	NaN	8.7249E-12	1	18299	133.49	105.9	1	361630			4804	141	4081	4176	4804	4804		
ELSDQATASPIVAR	14	Unmodified	_ELSDQATASPIVAR_			0	0	0	Q5JSH3	Q5JSH3	Q5JSH3	WDR44	WD repeat-containing protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.383362	1456.75217	1.7425	0.001271	-0.63479	-0.00046301	1.1077	0.00080796	729.38369341516	7.2166	0.12413	7.2166	7.1368	7.261	0	471	49	1.00957851518677	0.0322318588026405	1.00957851518677	408.198050080536	0	13.0321532360214						315	15	3	NaN	NaN	NaN	3.7845E-05	1	17155	91.245	69.201	1	98975			4805	1967	4082	4177	4805	4805		
ELSEALTR	8	Unmodified	_ELSEALTR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.748182	917.481811	-0.86214	-0.00039637	0.48775	0.00022424	-0.37439	-0.00017213	459.748384541879	5.2923	0.22169	5.2923	5.1681	5.3898	0	750	37	0.820941264895493	0.024501095294577	0.820941264895493	333.756164647192	0	9.96099470796412						362	26	3	NaN	NaN	NaN	0.019299	1	2653	62.88	18.113	1	119050			4806	1035	4083	4178	4806	4806		
ELSEPSSTR	9	Unmodified	_ELSEPSSTR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.246003	1004.47745	0.77346	0.00038924	-0.1134	-5.7066E-05	0.66006	0.00033217	503.246029217647	2.6321	0.38131	2.6321	2.5789	2.9602	0	750	49	0.820941264895493	0.0326635887437258	0.820941264895493	333.329444295625	0	13.2625028734948						896	44	4	NaN	NaN	NaN	1.2686E-06	1	4378	141.93	103.61	1	351270			4807	922	4084	4179	4807	4807		
ELSEQIQR	8	Unmodified	_ELSEQIQR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.764363	1001.51417	1.1829	0.00059354	0.093381	4.6855E-05	1.2763	0.0006404	501.764802178101	4.0066	0.15077	4.0066	3.9534	4.1041	0	717	49	0.84338031290707	0.0326227467021474	0.84338031290707	342.454133370345	0	13.2464491749111						475	18	4	NaN	NaN	NaN	0.00047104	1	4320	100.75	70.193	1	247570			4808	710	4085	4180	4808	4808		
ELSFVLDYINQSPK	14	Unmodified	_ELSFVLDYINQSPK_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.930145	1651.84574	1.0585	0.00087528	0.73672	0.00060921	1.7952	0.0014845	827.43181780485	16.91	0.10644	16.91	16.865	16.972	0	270	28	1.14398322290989	0.0179724190816779	1.14398322290989	462.026946530293	0	7.25862210544364						292	13	4	NaN	NaN	NaN	1.271E-07	1	23110	131.54	80.71	1	86550			4809	2200	4086	4181	4809	4809		
ELSIHFVPGSCR	12	Unmodified	_ELSIHFVPGSCR_			0	0	0	Q9NZL9	Q9NZL9	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.350811	1400.68707	1.2512	0.0008775	3.7332	0.0026183	4.9843	0.0034958	701.352806241949	9.5672	0.14186	9.5672	9.4785	9.6204	0	465	37	1.01360860968299	0.0241839121258494	1.01360860968299	409.981790756759	0	9.78184627295224						255	17	4	NaN	NaN	NaN	0.003869	1	15465	68.49	52.611	1	65313			4810	3135	4087	4182	4810	4810		
ELSLAGNELGDEGAR	15	Unmodified	_ELSLAGNELGDEGAR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.873359	1529.73216	2.6355	0.0020185	0.068605	5.2543E-05	2.7041	0.002071	765.873682488064	9.709	0.30149	9.709	9.6026	9.9041	0	417	46	1.04580932352505	0.0301569310517751	1.04580932352505	422.657237074639	0	12.1877333374991						875	35	5	NaN	NaN	NaN	6.203E-33	1	19418	224.49	181.21	1	457990			4811	678	4088	4183	4811	4811		
ELSNFYFSIIK	11	Unmodified	_ELSNFYFSIIK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.861003	1359.70745	-0.12813	-8.724E-05	-1.0526	-0.0007167	-1.1808	-0.00080394	680.859291389448	16.865	0.19511	16.865	16.794	16.989	0	513	37	0.981336640919867	0.0242307604673273	0.981336640919867	397.045452787881	0	9.80368291570829						361	23	3	NaN	NaN	NaN	0.0038321	1	14192	62.271	27.49	1	134810			4812	3037	4089	4184	4812	4812		
ELSQIEACQGPMQMR	15	Unmodified	_ELSQIEACQGPMQMR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.405131	1776.79571	2.9439	0.0026183	-0.52704	-0.00046875	2.4168	0.0021495	889.40465413691	9.647	0.15961	9.647	9.5672	9.7268	0	330	52	1.10399226369747	0.0340321108810946	1.10399226369747	445.614667765458	0	13.7366975134818						670	19	5	NaN	NaN	NaN	3.5408E-08	1	26588	121.96	116.81	1	189060			4813	2594	4090	4185	4813	4813		
ELSQIEAELNK	11	Unmodified	_ELSQIEAELNK_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.33535	1272.65615	1.19	0.00075843	-0.65525	-0.00041762	0.53476	0.00034082	637.335026264773	9.9839	0.15072	9.9839	9.9307	10.081	0	537	28	0.965173861991602	0.0181944515400058	0.965173861991602	390.774741122361	0	7.36647807239416						187	18	2	NaN	NaN	NaN	0.036609	1	11576	33.723	24.209	1	43673			4814	1979	4091	4186	4814	4814		
ELSQNTDESGLNDEAIAK	18	Unmodified	_ELSQNTDESGLNDEAIAK_			0	0	0	P35251	P35251	P35251	RFC1	Replication factor C subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.452898	1932.89124	2.9384	0.0028427	-2.6128	-0.0025278	0.32554	0.00031495	967.450544339856	7.3053	0.079824	7.3053	7.2698	7.3496	0	282	52	1.13599383354359	0.03395725115354	1.13599383354359	458.244915027413	0	13.6979068107075						306	10	4	NaN	NaN	NaN	3.4476E-10	1	30373	116.36	98.262	1	62437			4815	966	4092	4187	4815	4815		
ELSTTLNADEAVTR	14	Unmodified	_ELSTTLNADEAVTR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.383559	1518.75257	2.5449	0.0019351	-1.9726	-0.0015	0.57223	0.00043511	760.381948144288	8.3253	0.31928	8.3253	8.2632	8.5825	0	420	73	1.04379886199097	0.0482211594652822	1.04379886199097	421.872078450214	0	19.489541050174						816	37	5	NaN	NaN	NaN	1.3239E-25	1	19097	204.34	158.3	1	540850			4816	955	4093	4188	4816	4816		
ELTAPDENIPAK	12	Unmodified	_ELTAPDENIPAK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.33535	1296.65615	1.921	0.0012473	-1.139	-0.0007396	0.78194	0.00050774	649.334421091157	6.7909	0.28374	6.7909	6.6757	6.9594	0	546	67	0.959108205975751	0.0444968965895804	0.959108205975751	388.241742143717	0	18.0120997237764						580	33	3	NaN	NaN	NaN	0.049922	1	12256	44.57	40.03	1	234090			4817	651	4094	4189	4817	4817		
ELTDEEAER	9	Unmodified	_ELTDEEAER_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.2462	1090.47785	1.7136	0.00093603	0.14988	8.1869E-05	1.8634	0.0010179	546.246186509543	3.0755	0.16846	3.0755	3.0311	3.1996	0	672	37	0.873923798053065	0.024412742353751	0.873923798053065	354.463712220643	0	9.90181443676767						346	20	2	NaN	NaN	NaN	0.00065166	1	6464	102.46	39.584	1	292280			4818	3332	4095	4190	4818	4818		
ELTDEEAERLQLEIDQK	17	Unmodified	_ELTDEEAERLQLEIDQK_			0	0	1	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.011174	2058.01169	0.99837	0.00068589	-0.3443	-0.00023653	0.65407	0.00044936	687.345192206331	11.296	0.11533	11.296	11.252	11.367	0	588	43	0.93076847747433	0.0283672188304905	0.93076847747433	562.943579616026	0	17.1569451465742						345	14	4	NaN	NaN	NaN	1.2207E-06	1	32673	100.69	83.278	1	73637			4819	3332	4096	4191	4819	4819		
ELTGYNADVICLQEVDR	17	Unmodified	_ELTGYNADVICLQEVDR_			0	0	0	Q6L8Q7	Q6L8Q7	Q6L8Q7	PDE12	2,5-phosphodiesterase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.978029	1993.94151	1.5937	0.0015905	5.4109	0.0054	7.0046	0.0069905	998.485804284106	13.629	0.1064	13.629	13.593	13.7	0	201	34	1.18983705239708	0.021902983606175	1.18983705239708	479.859764270488	0	8.83344532674028						162	13	3	NaN	NaN	NaN	0.0001006	1	31522	84.58	73.821	1	39361			4820	2043	4097	4192	4820	4820		
ELTHIYR	7	Unmodified	_ELTHIYR_			0	0	0	P22059	P22059	P22059	OSBP	Oxysterol-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.253434	930.492316	1.2498	0.00058275	2.1621	0.0010081	3.4119	0.0015908	466.254399341777	3.776	0.14188	3.776	3.7406	3.8824	0	708	37	0.849494101904619	0.0244500640244978	0.849494101904619	345.293160053994	0	9.93819715947745						149	17	2	NaN	NaN	NaN	0.0054947	1	2885	80.294	18.799	1	32683			4821	798	4098	4193	4821	4821		
ELTNDGELILTMTADDVVCTR	21	Unmodified	_ELTNDGELILTMTADDVVCTR_			0	0	0	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1183.56434	2365.11413	0.45012	0.00053275	0.70992	0.00084024	1.16	0.001373	1184.06595466741	18.39	0.088658	18.39	18.364	18.452	0	66	28	1.27913350869533	0.0178079416067196	1.27913350869533	515.312829652855	0	7.17412273016856						113	11	3	NaN	NaN	NaN	1.442E-05	1	36176	51.128	41.217	1	18453			4822	887	4099	4194	4822	4822		
ELTNDGELILTMTADDVVCTR	21	Unmodified	_ELTNDGELILTMTADDVVCTR_			0	0	0	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.378652	2365.11413	1.3042	0.0010295	2.5561	0.0020177	3.8602	0.0030472	789.381081952883	18.39	0.088658	18.39	18.364	18.452	0	369	22	1.07793901817685	0.0140402733373235	1.07793901817685	651.387537952605	0	8.48439376176304						175	11	4	NaN	NaN	NaN	0.00034195	1	36178	83.061	72.735	1	33905			4823	887	4099	4194	4823	4823		
ELTNQQEASVER	12	Unmodified	_ELTNQQEASVER_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.341694	1402.66884	3.0268	0.0021259	-2.3886	-0.0016776	0.63822	0.00044825	702.340348099412	3.7406	0.15958	3.7406	3.7051	3.8647	0	504	76	0.987393073566096	0.0505052245201806	0.987393073566096	399.372706132008	0	20.4279417492582						699	19	4	NaN	NaN	NaN	1.8595E-07	1	15536	135.28	109.67	1	193060			4824	1736	4100	4195	4824	4824		
ELTPQVVSAAR	11	Unmodified	_ELTPQVVSAAR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.827495	1169.64044	1.0094	0.00059136	-0.29326	-0.0001718	0.71619	0.00041956	585.827264267084	7.1014	0.23949	7.1014	7.0303	7.2698	0	615	58	0.912521036363781	0.0385437520170938	0.912521036363781	369.806035880155	0	15.6201463565021						710	28	3	NaN	NaN	NaN	0.007668	1	8606	59.645	48.943	1	254740			4825	753	4101	4196	4825	4825		
ELTSTCSPIISK	12	Unmodified	_ELTSTCSPIISK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.34486	1334.67517	1.7292	0.0011557	-2.734	-0.0018272	-1.0047	-0.0006715	668.342902857604	7.0037	0.33701	7.0037	6.9328	7.2698	0	519	82	0.97729762293174	0.0545381044282719	0.97729762293174	395.485911352376	0	22.0700955646883						1215	38	4	NaN	NaN	NaN	2.0948E-11	1	13427	195.4	156.39	1	891330			4826	955	4102	4197	4826	4826		
ELTVSNNDINEAGVR	15	Unmodified	_ELTVSNNDINEAGVR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.90519	1629.79583	2.5715	0.0020981	-1.7817	-0.0014537	0.78981	0.00064441	815.904488512906	7.8906	0.18622	7.8906	7.8463	8.0325	0	408	52	1.0518390438467	0.0341589991885669	1.0518390438467	424.859969683426	0	13.7975400747587						710	22	5	NaN	NaN	NaN	2.8117E-24	1	22470	210.4	171.36	1	454290			4827	678	4103	4198	4827	4827		
ELTYQNTDLSEIK	13	Unmodified	_ELTYQNTDLSEIK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.38831	1552.76207	2.1103	0.0016405	3.6732	0.0028555	5.7835	0.004496	777.387993826283	9.9307	0.14188	9.9307	9.8598	10.002	0	369	79	1.07793901817685	0.0521891837070347	1.07793901817685	435.584285469335	0	21.089122771254						666	17	4	NaN	NaN	NaN	2.8245E-11	1	20149	129.69	95.963	1	232750			4828	1927	4104	4199	4828	4828		
ELVEFAQDDDRLR	13	Unmodified	_ELVEFAQDDDRLR_			0	0	1	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.397001	1604.77945	2.0774	0.001669	1.1995	0.00096366	3.2769	0.0026326	803.899342945406	9.2834	0.1153	9.2834	9.2391	9.3544	0	333	37	1.10198982404297	0.0240309347429271	1.10198982404297	445.175392862109	0	9.70787622682178						212	14	2	NaN	NaN	NaN	0.0092166	1	21736	64.906	60.077	1	71105			4829	1763	4105	4200	4829	4829		
ELVEPLTPSGEAPNQALLR	19	Unmodified	_ELVEPLTPSGEAPNQALLR_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.54694	2033.07932	1.1981	0.0012191	-2.5291	-0.0025735	-1.331	-0.0013544	1017.5434628745	13.425	0.1064	13.425	13.398	13.504	0	147	43	1.22562176648663	0.0278058342330012	1.22562176648663	494.225931329684	0	11.2125654879627						288	13	3	NaN	NaN	NaN	0.027705	1	32211	22.724	19.283	1	54276			4830	483	4106	4201	4830	4830		
ELVGPPLAETVFTPK	15	Unmodified	_ELVGPPLAETVFTPK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.445431	1596.87631	2.1097	0.0016866	-0.39853	-0.0003186	1.7112	0.001368	799.444941839676	15.544	0.23955	15.544	15.411	15.65	-3.5527E-15	294	40	1.12800004657306	0.0259887509871912	1.12800004657306	455.70215403084	0	10.4992281174228						644	28	4	NaN	NaN	NaN	4.2419E-07	1	21487	106.11	86.789	1	212070			4831	1151	4107	4202	4831	4831		
ELVLALYDYQEK	12	Unmodified	_ELVLALYDYQEK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.387582	1482.76061	1.5737	0.0011683	1.0887	0.00080824	2.6624	0.0019765	742.388415276239	14.462	0.15074	14.462	14.418	14.568	0	372	40	1.07593298845566	0.0260855828537037	1.07593298845566	434.95503469615	0	10.5453180792305						375	18	3	NaN	NaN	NaN	2.5139E-07	1	17995	148.9	129.58	1	133420			4832	1703	4108	4203	4832	4832		
ELVNDDEDIDWVQTEK	16	Unmodified	_ELVNDDEDIDWVQTEK_			0	0	0	P41743	P41743	P41743	PRKCI	Protein kinase C iota type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.444542	1946.87453	1.8702	0.0018224	2.3632	0.0023028	4.2334	0.0041252	974.445607448538	12.369	0.14188	12.369	12.272	12.414	0	240	49	1.16393748060522	0.0319048822592995	1.16393748060522	469.492957635274	0	12.8693488993369						307	17	3	NaN	NaN	NaN	2.0872E-06	1	30654	102.57	92.824	1	62253			4833	1038	4109	4204	4833	4833		
ELVNNLGEIYQK	12	Unmodified	_ELVNNLGEIYQK_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.377549	1418.74054	2.072	0.0014719	-6.3094	-0.004482	-4.2373	-0.0030101	710.873702763018	11.012	0.25715	11.012	10.879	11.137	0	456	49	1.01965166402748	0.0322318588026405	1.01965166402748	412.374800529658	0	13.0354382906993						598	30	4	NaN	NaN	NaN	0.0024249	1	16062	74.424	52.38	1	184370			4834	2897	4110	4205	4834	4834		
ELVPSSDPIVFVVGAFAHGK	20	Unmodified	_ELVPSSDPIVFVVGAFAHGK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.373719	2068.09933	0.5063	0.00034954	0.71037	0.00049042	1.2167	0.00083996	690.375418974101	19.525	0.25719	19.525	19.366	19.623	0	513	67	0.981336640919867	0.0443923757513962	0.981336640919867	593.508622058944	0	26.8483379336953						675	30	5	NaN	NaN	NaN	1.5906E-05	1	32852	76.563	60.432	1	246660			4835	2450	4111	4206	4835	4835		
ELVQVQTLMDNMTLER	16	Unmodified	_ELVQVQTLMDNMTLER_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.481893	1918.94923	1.1163	0.0010722	-1.2979	-0.0012466	-0.18163	-0.00017446	960.483690761978	17.513	0.10641	17.513	17.459	17.566	0	216	37	1.17988115188462	0.023905654272754	1.17988115188462	475.97312378753	0	9.64372464312419						304	13	4	NaN	NaN	NaN	6.5913E-14	1	30040	132.93	122.45	1	60355			4836	1810	4112	4207	4836	4836		
ELVSCSNCTDYQAR	14	Unmodified	_ELVSCSNCTDYQAR_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.861611	1701.70867	2.178	0.0018554	4.6034	0.0039215	6.7814	0.0057768	852.367376965378	5.3898	0.15072	5.3898	5.3455	5.4962	0	390	64	1.06389100039157	0.0421440729846028	1.06389100039157	429.574894692616	0	17.016814417657						558	18	5	NaN	NaN	NaN	4.9118E-06	1	24541	97.175	88.369	1	164220			4837	1139	4113	4208	4837	4837		
ELVSDANQHVK	11	Unmodified	_ELVSDANQHVK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.320034	1238.62551	2.6148	0.001622	-1.4071	-0.00087284	1.2077	0.00074918	620.319126135903	3.102	0.2128	3.102	3.0666	3.2794	0	570	40	0.942920803299286	0.0263172834355764	0.942920803299286	381.87761570463	0	10.6583515975423						384	25	4	NaN	NaN	NaN	0.00038465	1	10578	95.311	79.432	1	113880			4838	905	4114	4209	4838	4838		
ELVSDTNQHVK	11	Unmodified	_ELVSDTNQHVK_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.325316	1268.63608	2.0866	0.0013257	-0.68442	-0.00043483	1.4022	0.00089083	635.324772320006	2.8449	0.13299	2.8449	2.8183	2.9513	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	382.597680442029	0	6.55682017593972						176	16	3	NaN	NaN	NaN	0.0007327	1	11470	58.916	39.66	1	31061			4839	906	4115	4210	4839	4839		
ELVTIIPNFSLDK	13	Unmodified	_ELVTIIPNFSLDK_			0	0	0	Q9Y248	Q9Y248	Q9Y248	GINS2	DNA replication complex GINS protein PSF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.919049	1487.82355	0.64405	0.00047976	0.84348	0.00062833	1.4875	0.0011081	744.919675893332	17.433	0.11528	17.433	17.388	17.504	0	411	49	1.04982941439551	0.0321607366082963	1.04982941439551	424.389090672963	0	13.000841448538						393	14	4	NaN	NaN	NaN	0.00041578	1	18179	87.942	45.867	1	108830			4840	3328	4116	4211	4840	4840		
ELVTQQLPHLLK	12	Unmodified	_ELVTQQLPHLLK_			0	0	0	Q99584	Q99584	Q99584	S100A13	Protein S100-A13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.617043	1417.8293	-2.4848	-0.0011768	-1.2469	-0.00059055	-3.7317	-0.0017674	473.616151068327	11.846	0.17739	11.846	11.766	11.944	0	783	28	0.798467866007927	0.0184052442534667	0.798467866007927	484.38276617184	0	11.1653624436203						235	21	3	NaN	NaN	NaN	0.046554	1	16039	28.096	28.096	1	52504			4841	2653	4117	4212	4841	4841		
ELVTQQLPHLLK	12	Unmodified	_ELVTQQLPHLLK_			0	0	0	Q99584	Q99584	Q99584	S100A13	Protein S100-A13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.921926	1417.8293	1.4521	0.0010309	1.2127	0.00086096	2.6649	0.0018918	709.922724916931	11.855	0.23944	11.855	11.731	11.97	0	384	40	1.06790610341098	0.0260999743301487	1.06790610341098	431.892853562553	0	10.555602552839						707	28	4	NaN	NaN	NaN	1.2904E-07	1	16040	124.81	108.93	1	253620			4842	2653	4117	4212	4842	4842		
ELVVNCCTEFIHLISSEANEICNK	24	Unmodified	_ELVVNCCTEFIHLISSEANEICNK_			0	0	0	Q01658	Q01658	Q01658	DR1	Protein Dr1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	960.450593	2878.32995	0.0106	1.0181E-05	-0.0034446	-3.3084E-06	0.0071554	6.8724E-06	960.784633796392	18.585	0.053198	18.585	18.55	18.603	0	489	16	0.997481546940468	0.0100842904897975	0.997481546940468	602.140002158249	0	6.08748574438903						68	7	4	NaN	NaN	NaN	0.013012	1	38044	21.21	20.733	1	9953.1			4843	1519	4118	4213	4843	4843		
ELVVTQLGYDTR	12	Unmodified	_ELVVTQLGYDTR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.369724	1392.72489	1.5791	0.0011012	-3.0778	-0.0021464	-1.4987	-0.0010451	697.368129562533	11.208	0.24834	11.208	11.101	11.35	0	474	37	1.00756305028564	0.024187253928307	1.00756305028564	407.559301668214	0	9.78374536213681						573	29	4	NaN	NaN	NaN	2.9691E-07	1	15243	110.88	83.937	1	309830			4844	1521	4119	4214	4844	4844		
ELVYPPDYNPEGK	13	Unmodified	_ELVYPPDYNPEGK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.867014	1519.71947	1.9745	0.0015024	0.75694	0.00057593	2.7315	0.0020783	760.867472380993	9.4253	0.49659	9.4253	9.2656	9.7622	0	426	70	1.03977710643793	0.0462597941637368	1.03977710643793	420.24418065582	0	18.6967083380451						1683	57	5	NaN	NaN	NaN	0.0072017	1	19123	63.212	34.565	1	832720			4845	673	4120	4215	4845	4845		
ELWLVIHGR	9	Unmodified	_ELWLVIHGR_			0	0	0	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.824558	1121.63456	1.1102	0.00062371	-1.2146	-0.00068242	-0.10449	-5.8706E-05	561.823649083049	11.367	0.16853	11.367	11.314	11.483	0	594	34	0.926715457081489	0.0222931596374992	0.926715457081489	375.745723199504	0	9.03897666364009						365	20	4	NaN	NaN	NaN	9.3686E-06	1	7324	113.14	91.861	1	121070			4846	187	4121	4216	4846	4846		
ELWTILLGR	9	Unmodified	_ELWTILLGR_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.826766	1099.63898	-0.44888	-0.00024726	-2.0072	-0.0011056	-2.4561	-0.0013529	550.826429801542	18.39	0.1064	18.39	18.355	18.461	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.374517481098	0	9.06627779485353						205	13	3	NaN	NaN	NaN	0.00024523	1	6716	113.14	88.285	1	74712			4847	1979	4122	4217	4847	4847		
ELYENFCK	8	Unmodified	_ELYENFCK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.747324	1101.4801	0.80801	0.00044582	0.77467	0.00042742	1.5827	0.00087324	551.747722714123	7.2077	0.14188	7.2077	7.1634	7.3053	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	367.603826808432	0	9.87725658859978						357	17	4	NaN	NaN	NaN	0.013237	1	6748	42.835	32.007	1	147130			4848	2029	4123	4218	4848	4848		
ELYGSILQENPQVVYK	16	Unmodified	_ELYGSILQENPQVVYK_			0	0	0	Q96BW9	Q96BW9	Q96BW9	TAMM41	Phosphatidate cytidylyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.493641	1878.97273	1.6704	0.001571	-0.36959	-0.0003476	1.3008	0.0012234	940.99513493057	13.398	0.10643	13.398	13.345	13.451	0	234	40	1.16792504164217	0.02591024903842	1.16792504164217	471.221891075757	0	10.4539898664736						440	13	6	NaN	NaN	NaN	1.5167E-06	1	29138	94.791	69.178	1	109660			4849	2487	4124	4219	4849	4849		
ELYIQHAK	8	Unmodified	_ELYIQHAK_			0	0	0	Q00059	Q00059	Q00059	TFAM	Transcription factor A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.274367	1000.53418	1.203	0.00060305	1.15	0.00057648	2.3531	0.0011795	501.274855539306	3.2528	0.23053	3.2528	3.2173	3.4479	0	672	28	0.873923798053065	0.0183082845696197	0.873923798053065	354.861004330895	0	7.43416790391211						300	27	3	NaN	NaN	NaN	0.013714	1	4301	49.058	28.825	1	59644			4850	1495	4125	4220	4850	4850		
ELYLEEALQNER	12	Unmodified	_ELYLEEALQNER_			0	0	0	Q9NTX5	Q9NTX5	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.87537	1505.73619	1.0519	0.000793	2.0638	0.0015559	3.1157	0.0023489	753.877097928376	13.7	0.1064	13.7	13.646	13.753	0	384	58	1.06790610341098	0.0381671761516003	1.06790610341098	431.649180547871	0	15.427227409828						341	13	4	NaN	NaN	NaN	0.029355	1	18677	50.297	34.418	1	61391			4851	3046	4126	4221	4851	4851		
ELYLFDVLR	9	Unmodified	_ELYLFDVLR_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.324057	1166.63356	0.1096	6.4044E-05	-0.65555	-0.00038305	-0.54595	-0.00031901	584.323846790377	18.621	0.1862	18.621	18.577	18.763	0	615	58	0.912521036363781	0.0385330681003847	0.912521036363781	369.81714642383	0	15.6162857840775						670	22	5	NaN	NaN	NaN	5.3445E-06	1	8521	150.88	97.003	1	572410			4852	581	4127	4222	4852	4852		
ELYQQLQR	8	Unmodified	_ELYQQLQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.288005	1076.56146	1.4412	0.00077722	-2.0235	-0.0010913	-0.58234	-0.00031405	539.286730302602	6.0372	0.23941	6.0372	5.984	6.2234	0	663	37	0.880024865079826	0.0243991920216602	0.880024865079826	356.99588097802	0	9.89791470282421						247	28	2	NaN	NaN	NaN	0.00055933	1	6129	104.76	81.189	1	155370			4853	1816	4128	4223	4853	4853		
ELYTLLNENYVEDDDNMFR	19	Unmodified	_ELYTLLNENYVEDDDNMFR_			0	0	0	P30419;O60551	P30419	P30419	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1197.03373	2392.05291	0.40279	0.00048216	2.7553	0.0032982	3.1581	0.0037804	1197.53850816748	17.504	0.10641	17.504	17.459	17.566	0	63	49	1.28111162701928	0.0316650717164555	1.28111162701928	516.075767311123	0	12.7557785273191						323	13	4	NaN	NaN	NaN	1.1226E-07	1	36308	122.66	120.12	1	64077			4854	909	4129	4224	4854	4854		
ELYTVVQHVK	10	Unmodified	_ELYTVVQHVK_			0	0	0	Q7Z5K2	Q7Z5K2	Q7Z5K2	WAPAL	Wings apart-like protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.340238	1214.66592	1.2258	0.00074569	0.13412	8.1588E-05	1.3599	0.00082727	608.340378966461	6.3831	0.079797	6.3831	6.3565	6.4363	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	395.886072068188	0	6.54544624238724						124	10	3	NaN	NaN	NaN	0.0010822	1	9871	79.809	68.449	1	31248			4855	2145	4130	4225	4855	4855		
ELYVAADEASIAPILAEAQAHFGR	24	Unmodified	_ELYVAADEASIAPILAEAQAHFGR_			0	0	0	Q8NFF5	Q8NFF5	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.102727	2541.28635	0.789	0.00066915	1.0361	0.00087869	1.8251	0.0015478	848.438498946446	19.029	0.070888	19.029	18.984	19.055	0	294	16	1.12800004657306	0.00999567175300431	1.12800004657306	681.362961404401	0	6.03783707947935						78	9	3	NaN	NaN	NaN	0.040897	1	36996	9.1553	9.1553	1	13853			4856	2316	4131	4226	4856	4856		
EMAHGSQEAEAPGAVAGAAEVPR	23	Unmodified	_EMAHGSQEAEAPGAVAGAAEVPR_			0	0	0	Q8IVD9	Q8IVD9	Q8IVD9	NUDCD3	NudC domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.686808	2234.03859	1.8177	0.0013555	0.75619	0.00056388	2.5739	0.0019193	746.021478203822	6.8974	0.062073	6.8974	6.8707	6.9328	0	384	34	1.06790610341098	0.0220876383289843	1.06790610341098	645.54574524598	0	13.3519050975219						167	8	4	NaN	NaN	NaN	2.692E-06	1	35025	70.831	69.957	1	39809			4857	2196	4132	4227	4857	4857		
EMAPVPGTTTTTTSVK	16	Unmodified	_EMAPVPGTTTTTTSVK_			0	0	0	O75150	O75150	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.911095	1619.80764	2.6528	0.0021512	-1.0264	-0.00083229	1.6264	0.0013189	811.412163760775	6.7111	0.088688	6.7111	6.6757	6.7644	0	372	58	1.07593298845566	0.0381408649762871	1.07593298845566	434.614604630094	0	15.4067001660688						423	11	4	NaN	NaN	NaN	0.0013845	1	22184	63.908	46.178	1	88932			4858	305	4133	4228	4858	4858		
EMATISEDVIIVTSSLTK	18	Unmodified	_EMATISEDVIIVTSSLTK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.011006	1936.00746	1.3983	0.0013549	-3.9721	-0.003849	-2.5738	-0.002494	969.507263666963	19.871	0.053198	19.871	19.853	19.907	0	219	22	1.17788915118882	0.0139459212986117	1.17788915118882	475.139485963657	0	5.62553604507201						107	7	4	NaN	NaN	NaN	0.036544	1	30444	24.922	22.785	1	14995			4859	3173	4134	4229	4859	4859		
EMDEAATAEER	11	Unmodified	_EMDEAATAEER_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.261524	1250.5085	2.1282	0.0013328	-0.20376	-0.00012761	1.9244	0.0012052	626.261398314389	3.3858	0.16856	3.3858	3.3503	3.5189	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.170035668545	0	10.6779263881119						300	20	2	NaN	NaN	NaN	3.119E-05	1	10921	111.61	100.25	1	185420			4860	1544	4135	4230	4860	4860		
EMDLVGLGLHPLFSSR	16	Unmodified	_EMDLVGLGLHPLFSSR_			0	0	0	Q8TDD1	Q8TDD1	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.978423	1769.91344	-0.24303	-0.00014362	0.045604	2.6951E-05	-0.19742	-0.00011667	591.313025873233	17.176	0.19508	17.176	17.122	17.317	0	615	43	0.912521036363781	0.0284144382573517	0.912521036363781	552.508222517759	0	17.2042179301075						413	23	5	NaN	NaN	NaN	0.00012157	1	26416	73.891	67.035	1	123140			4861	2347	4136	4231	4861	4861		
EMDLVGLGLHPLFSSR	16	Unmodified	_EMDLVGLGLHPLFSSR_			0	0	0	Q8TDD1	Q8TDD1	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.963997	1769.91344	1.2756	0.0011301	2.46	0.0021795	3.7355	0.0033096	886.46825820191	17.167	0.15962	17.167	17.131	17.291	0	243	43	1.16194328902838	0.027916769999432	1.16194328902838	469.020089731422	0	11.2686446006276						266	19	3	NaN	NaN	NaN	2.1547E-06	1	26418	85.813	79.786	1	65810			4862	2347	4136	4231	4862	4862		
EMDQTMAANAQK	12	Unmodified	_EMDQTMAANAQK_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.294844	1336.57514	1.9723	0.00132	0.33626	0.00022506	2.3086	0.0015451	669.295518534853	3.5898	0.18614	3.5898	3.5544	3.7406	-4.4409E-16	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	385.663889437167	0	8.18700228938286						268	22	3	NaN	NaN	NaN	0.00049641	1	13478	78.816	67.456	1	58028			4863	902	4137	4232	4863	4863		
EMDRETLIDVAR	12	Unmodified	_EMDRETLIDVAR_			0	0	1	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.245169	1446.71368	-1.0207	-0.00049326	-0.2419	-0.0001169	-1.2626	-0.00061016	483.24518952003	8.6002	0.10642	8.6002	8.5559	8.6623	0	765	31	0.810730346695089	0.0204260995124381	0.810730346695089	491.726936380676	0	12.3889075774729						191	13	3	NaN	NaN	NaN	0.0026229	1	16884	57.888	46.532	1	42579			4864	1016	4138	4233	4864	4864		
EMDRETLIDVAR	12	Oxidation (M)	_EM(Oxidation (M))DRETLIDVAR_	EM(1)DRETLIDVAR	EM(50)DRETLIDVAR	0	1	1	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.576807	1462.70859	-0.56231	-0.00027473	0.64326	0.00031428	0.080957	3.9554E-05	488.577372888976	7.128	0.12415	7.128	7.0747	7.1989	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	501.582034547258	0	11.1387896586164						259	15	3	NaN	NaN	NaN	0.020577	1	17347	50.297	37.023	1	66032			4865	1016	4138	4234	4865	4865	368	
EMEAELEDERK	11	Unmodified	_EMEAELEDERK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.210013	1377.60821	-0.54923	-0.00025276	1.2126	0.00055804	0.66336	0.00030528	460.21043042241	4.2194	0.097534	4.2194	4.1839	4.2815	0	810	25	0.78005493425781	0.0163795890035051	0.78005493425781	473.345982646688	0	9.93931620929982						182	12	3	NaN	NaN	NaN	0.001073	1	14721	69.716	58.36	1	60677			4866	972	4139	4235	4866	4866		
EMEAELEDERK	11	Unmodified	_EMEAELEDERK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.811381	1377.60821	2.3927	0.0016505	-1.2947	-0.00089307	1.098	0.00075745	689.81058807308	4.2194	0.26602	4.2194	4.1662	4.4322	0	507	40	0.985374541851584	0.0262409175570258	0.985374541851584	398.62703513984	0	10.6155971367502						603	31	5	NaN	NaN	NaN	3.8393E-16	1	14723	158.57	139.24	1	259110			4867	972	4139	4235	4867	4867		
EMEENFAVEAANYQDTIGR	19	Unmodified	_EMEENFAVEAANYQDTIGR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.98658	2185.95861	1.6694	0.0018263	-0.41271	-0.0004515	1.2567	0.0013748	1094.48770708913	13.336	0.41681	13.336	13.221	13.637	0	159	103	1.21767724410157	0.0675748671364431	1.21767724410157	490.789351316078	0	27.236302039655						1694	48	6	NaN	NaN	NaN	1.8333E-35	1	34528	251.28	223.05	1	776990			4868	588	4140	4236	4868	4868		
EMEENFAVEAANYQDTIGR	19	Unmodified	_EMEENFAVEAANYQDTIGR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.660147	2185.95861	0.82967	0.00060538	1.9521	0.0014243	2.7817	0.0020297	729.995599132706	13.345	0.097598	13.345	13.3	13.398	0	462	28	1.01562323939346	0.0181316691243478	1.01562323939346	614.024302446667	0	10.9620231739875						221	12	4	NaN	NaN	NaN	0.00022533	1	34529	80.379	76.073	1	59482			4869	588	4140	4236	4869	4869		
EMEENFAVEAANYQDTIGR	19	Oxidation (M)	_EM(Oxidation (M))EENFAVEAANYQDTIGR_	EM(1)EENFAVEAANYQDTIGR	EM(180)EENFAVEAANYQDTIGR	0	1	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1101.98404	2201.95353	1.7235	0.0018993	-0.29075	-0.0003204	1.4328	0.0015789	1102.48543716518	12.263	0.15077	12.263	12.201	12.352	0	153	73	1.22165005014568	0.047686786436828	1.22165005014568	492.368017874149	0	19.2194552882709						900	18	5	NaN	NaN	NaN	2.61E-34	1	34694	183	167.47	1	295710			4870	588	4140	4237	4870	4870	156	
EMEEQMR	7	Unmodified	_EMEEQMR_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.696777	951.379002	0.50198	0.00023929	1.6901	0.00080565	2.1921	0.0010449	476.697732394544	2.6498	0.21282	2.6498	2.6232	2.836	0	756	40	0.816857749704129	0.0265373178651986	0.816857749704129	331.921402691276	0	10.783155050768						192	25	2	NaN	NaN	NaN	0.009011	1	3267	49.058	42.296	1	35182			4871	814	4141	4238	4871	4871		
EMESNWVSLVSK	12	Unmodified	_EMESNWVSLVSK_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.842484	1407.67042	1.5497	0.0010923	1.6975	0.0011965	3.2472	0.0022887	704.843776699986	13.496	0.14188	13.496	13.434	13.575	0	468	28	1.01159370163332	0.0181341741775967	1.01159370163332	409.146969871866	0	7.3345083148626						293	17	4	NaN	NaN	NaN	1.7577E-05	1	15690	99.174	95.281	1	75736			4872	370	4142	4239	4872	4872		
EMETLEDHPVFNPAMK	16	Unmodified	_EMETLEDHPVFNPAMK_			0	0	0	Q7Z478	Q7Z478	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.9587	1886.85427	1.1315	0.00071278	2.2757	0.0014336	3.4072	0.0021464	630.294326375727	10.551	0.053216	10.551	10.516	10.569	0	495	16	0.993446994398923	0.0100870787903892	0.993446994398923	601.217274522896	0	6.1045290311888						80	7	3	NaN	NaN	NaN	0.036416	1	29300	21.361	17.625	1	14518			4873	2136	4143	4240	4873	4873		
EMETPLSALGIQDGCR	16	Unmodified	_EMETPLSALGIQDGCR_			0	0	0	Q99933	Q99933	Q99933	BAG1	BAG family molecular chaperone regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.916386	1775.81822	1.9145	0.0017018	3.0997	0.0027554	5.0142	0.0044572	889.421486394138	15.136	0.18623	15.136	15.012	15.198	0	309	37	1.11800162319566	0.0240044781973821	1.11800162319566	451.271306605624	0	9.68919187215084						344	22	3	NaN	NaN	NaN	0.00018471	1	26555	68.108	60.551	1	77432			4874	2682	4144	4241	4874	4874		
EMFEDTVEER	10	Unmodified	_EMFEDTVEER_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.774267	1283.53398	2.6114	0.0016785	-0.019801	-1.2728E-05	2.5916	0.0016658	642.774140070503	7.7398	0.21293	7.7398	7.6865	7.8995	0	534	49	0.967195187796614	0.0323434604594182	0.967195187796614	391.55749351872	0	13.0938661285758						628	25	4	NaN	NaN	NaN	1.7275E-07	1	11861	126.82	104.44	1	215910			4875	1890	4145	4242	4875	4875		
EMFGLYGQTTGK	12	Unmodified	_EMFGLYGQTTGK_			0	0	0	Q9Y6B6	Q9Y6B6	Q9Y6B6	SAR1B	GTP-binding protein SAR1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.318645	1330.62274	1.3988	0.00093202	1.7471	0.0011641	3.1459	0.0020962	666.319547827895	10.507	0.21282	10.507	10.445	10.658	0	504	40	0.987393073566096	0.0262409175570258	0.987393073566096	399.5837193721	0	10.6193204285943						438	25	4	NaN	NaN	NaN	0.055475	1	13308	37.749	34.647	1	123710			4876	3457	4146	4243	4876	4876		
EMFLEDILR	9	Unmodified	_EMFLEDILR_			0	0	0	Q9H6S0	Q9H6S0	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.299724	1164.5849	-0.67805	-0.00039551	0.35846	0.00020909	-0.3196	-0.00018642	583.299861843068	17.876	0.088666	17.876	17.841	17.929	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	367.357596894729	0	6.58042640995899						174	11	3	NaN	NaN	NaN	0.0036279	1	8461	81.642	16.33	1	40942			4877	2907	4147	4244	4877	4877		
EMFNPMYALFR	11	Unmodified	_EMFNPMYALFR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.833408	1417.65226	0.3165	0.00022467	1.776	0.0012607	2.0925	0.0014854	710.337128145031	19.073	0.10638	19.073	19.02	19.126	0	480	40	1.00353128488872	0.0262119132032216	1.00353128488872	405.858257942061	0	10.6008866790513						292	13	4	NaN	NaN	NaN	0.0052249	1	15999	46.447	40.581	1	73000			4878	2149	4148	4245	4878	4878		
EMGFTNMTEIQHK	13	Unmodified	_EMGFTNMTEIQHK_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.357976	1564.7014	1.8002	0.0014102	0.91522	0.00071694	2.7154	0.0021271	783.358977760341	8.6268	0.079809	8.6268	8.6002	8.68	-1.7764E-15	375	22	1.07392668217569	0.0140460810726906	1.07392668217569	433.933685160243	0	5.67549705496106						145	10	3	NaN	NaN	NaN	2.1978E-05	1	20477	111.61	103.61	1	30676			4879	3072	4149	4246	4879	4879		
EMGGHHIVALCVLK	14	Unmodified	_EMGGHHIVALCVLK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.942656	1562.80614	0.83336	0.00043497	1.5841	0.00082683	2.4175	0.0012618	521.943438391806	8.4938	0.097538	8.4938	8.4584	8.5559	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	549.386644148721	0	12.3013603413285						277	12	4	NaN	NaN	NaN	0.0029566	1	20446	74.424	70.178	1	107790			4880	481	4150	4247	4880	4880		
EMGLSLQWLYSAR	13	Unmodified	_EMGLSLQWLYSAR_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.392676	1552.7708	0.7544	0.00058646	0.81591	0.00063428	1.5703	0.0012207	777.39366738354	18.062	0.15075	18.062	18.018	18.169	0	390	37	1.06389100039157	0.0240972677801761	1.06389100039157	429.907612672906	0	9.73746263433219						362	18	4	NaN	NaN	NaN	4.8007E-06	1	20150	144.27	117.32	1	106060			4881	495	4151	4248	4881	4881		
EMGTPDVR	8	Unmodified	_EMGTPDVR_			0	0	0	P62899	P62899	P62899	RPL31	60S ribosomal protein L31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.713285	903.412016	0.70123	0.00031746	4.4799	0.0020281	5.1812	0.0023456	452.715512192007	3.9534	0.17732	3.9534	3.909	4.0864	0	768	52	0.808687310729125	0.034726792326599	0.808687310729125	328.849777867132	0	14.121524835531						398	21	3	NaN	NaN	NaN	0.022403	1	2383	58.286	42.787	1	123060			4882	1412	4152	4249	4882	4882		
EMGVDVHFPK	10	Unmodified	_EMGVDVHFPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.784241	1157.55393	0.72889	0.0004226	4.0166	0.0023287	4.7454	0.0027513	579.78509356809	9.0262	0.31937	9.0262	8.8576	9.177	0	594	46	0.926715457081489	0.0304124071077684	0.926715457081489	375.604114371056	0	12.3263566505947						456	37	3	NaN	NaN	NaN	0.045919	1	8265	29.31	21.127	1	109330			4883	1584	4153	4250	4883	4883		
EMIDIYSTR	9	Unmodified	_EMIDIYSTR_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.273706	1126.53286	0.41469	0.000234	2.4854	0.0014024	2.9	0.0016364	564.274548278512	9.3987	0.11524	9.3987	9.3455	9.4608	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	372.438005604768	0	8.22194275889416						220	14	3	NaN	NaN	NaN	0.0081255	1	7427	72.038	60.389	1	64728			4884	191	4154	4251	4884	4884		
EMIFEVLAPLAENDAIK	17	Unmodified	_EMIFEVLAPLAENDAIK_			0	0	0	P52306	P52306	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.997702	1901.98085	1.8165	0.0017293	-1.6775	-0.001597	0.13896	0.00013229	952.497880273465	19.818	0.079808	19.818	19.782	19.862	0	240	43	1.16393748060522	0.027916769999432	1.16393748060522	469.571397684902	0	11.262560855644						226	10	4	NaN	NaN	NaN	0.0043051	1	29646	39.166	35.43	1	49293			4885	1210	4155	4252	4885	4885		
EMIQHCVNANIDEAYK	16	Unmodified	_EMIQHCVNANIDEAYK_			0	0	0	P35250	P35250	P35250	RFC2	Replication factor C subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.629354	1933.86623	1.0627	0.00068612	0.88235	0.00056967	1.9451	0.0012558	645.964795671907	7.6688	0.062129	7.6688	7.6511	7.7132	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	523.865573217794	0	11.0840529717035						115	8	3	NaN	NaN	NaN	0.00040791	1	30396	66.953	57.692	1	20412			4886	965	4156	4253	4886	4886		
EMIQHCVNANIDEAYK	16	Unmodified	_EMIQHCVNANIDEAYK_			0	0	0	P35250	P35250	P35250	RFC2	Replication factor C subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.940392	1933.86623	3.3574	0.0032498	-1.3899	-0.0013453	1.9676	0.0019045	968.440255352696	7.6688	0.070997	7.6688	7.6422	7.7132	0	252	40	1.15595906938629	0.0259458875864387	1.15595906938629	466.296947725532	0	10.4661908089959						184	9	3	NaN	NaN	NaN	0.003168	1	30397	24.471	22.335	1	33743			4887	965	4156	4253	4887	4887		
EMITMLHYDLLHHPYEPSGNK	21	Unmodified	_EMITMLHYDLLHHPYEPSGNK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	632.054252	2524.1879	0.40581	0.00025649	0.29157	0.00018429	0.69738	0.00044078	632.30546482131	12.227	0.097571	12.227	12.183	12.281	0	615	49	0.912521036363781	0.0324736460639303	0.912521036363781	734.964018996705	0	26.1549711968592						404	12	6	NaN	NaN	NaN	0.00014299	1	36944	32.692	29.439	1	97265			4888	2640	4157	4254	4888	4888		
EMKPPTSQEEWEAEFQR	17	Unmodified	_EMKPPTSQEEWEAEFQR_			0	0	1	Q7KZN9	Q7KZN9	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.989716	2120.94732	0.73585	0.00052097	0.6611	0.00046805	1.3969	0.00098902	708.324642239978	10.738	0.13301	10.738	10.649	10.782	0	630	28	0.902373728295776	0.0182727556379993	0.902373728295776	545.66154025263	0	11.0494573073636						345	16	4	NaN	NaN	NaN	2.1313E-19	1	33629	221.56	200.2	1	72217			4889	2109	4158	4255	4889	4889		
EMLFEFIDR	9	Unmodified	_EMLFEFIDR_			0	0	0	O60942	O60942	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5-triphosphatase;mRNA guanylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.291899	1198.56925	-0.5503	-0.00033034	-0.82517	-0.00049535	-1.3755	-0.00082569	600.291439623079	16.652	0.11531	16.652	16.617	16.732	0	594	22	0.926715457081489	0.0141865549073745	0.926715457081489	375.452764331695	0	5.74759082263671						178	14	4	NaN	NaN	NaN	0.010244	1	9417	43.734	30.086	1	31116			4890	297	4159	4256	4890	4890		
EMLFEGGPRPWILEPSK	17	Unmodified	_EMLFEGGPRPWILEPSK_			0	0	1	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.676633	1985.00807	0.15192	0.00010068	-1.6346	-0.0010832	-1.4826	-0.00098251	663.009999784842	15.455	0.13313	15.455	15.402	15.535	0	645	46	0.892219381832517	0.0304630467152948	0.892219381832517	539.761324940129	0	18.4290711360574						491	16	4	NaN	NaN	NaN	0.0003268	1	31367	46.768	45.18	1	132130			4891	2354	4160	4257	4891	4891		
EMLFGSLAR	9	Unmodified	_EMLFGSLAR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.268227	1022.5219	-0.25767	-0.000132	-0.1772	-9.0776E-05	-0.43487	-0.00022277	512.268112997275	12.29	0.1153	12.29	12.236	12.352	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	353.931710278706	0	8.25835035657769						195	14	2	NaN	NaN	NaN	0.00010171	1	4795	84.368	56.664	1	76004			4892	240	4161	4258	4892	4892		
EMLGGEIIPR	10	Unmodified	_EMLGGEIIPR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.799891	1113.58523	0.88135	0.00049162	0.66897	0.00037315	1.5503	0.00086477	557.799441034929	11.101	0.19507	11.101	11.03	11.225	0	624	70	0.906433495720521	0.0466905920016633	0.906433495720521	367.554447610399	0	18.9328117647864						731	23	3	NaN	NaN	NaN	0.0030579	1	7086	76.605	65.903	1	253060			4893	1884	4162	4259	4893	4893		
EMLPHVGVSDFCETK	15	Unmodified	_EMLPHVGVSDFCETK_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.604257	1747.79094	-0.20378	-0.00011893	1.1036	0.00064407	0.89983	0.00052514	583.604961026744	10.711	0.079803	10.711	10.667	10.746	0	696	28	0.857641857947968	0.0183235429829339	0.857641857947968	519.33130292567	0	11.095528236355						185	10	3	NaN	NaN	NaN	0.0019318	1	25826	74.524	71.853	1	37083			4894	918	4163	4260	4894	4894		
EMLQAQLDR	9	Unmodified	_EMLQAQLDR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.279323	1102.54409	0.90585	0.00050028	4.7014	0.0025965	5.6073	0.0030968	552.282663591973	6.9683	0.23949	6.9683	6.8796	7.1191	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	370.890891649481	0	9.87166246687588						403	28	3	NaN	NaN	NaN	0.00075076	1	6781	88.921	75.273	1	100080			4895	2420	4164	4261	4895	4895		
EMLSVGLGFLR	11	Unmodified	_EMLSVGLGFLR_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.336641	1220.65873	-0.28921	-0.00017681	-0.61572	-0.00037641	-0.90494	-0.00055322	611.336180502148	17.069	0.23053	17.069	16.98	17.211	0	573	37	0.940896116921038	0.024301288635538	0.940896116921038	381.119442871256	0	9.84348156960999						392	27	4	NaN	NaN	NaN	0.00036996	1	10041	88.921	78.219	1	125850			4896	2165	4165	4262	4896	4896		
EMLTADNLDIDNMR	14	Unmodified	_EMLTADNLDIDNMR_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.87673	1649.73891	3.0941	0.0025554	2.9549	0.0024404	6.049	0.0049958	825.879099054117	12.946	0.11526	12.946	12.91	13.026	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	441.026158319503	0	9.7136374080572						284	14	4	NaN	NaN	NaN	9.9881E-08	1	23016	134.2	125.22	1	138690			4897	2601	4166	4263	4897	4897		
EMNDAAMFYTNR	12	Unmodified	_EMNDAAMFYTNR_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.808119	1461.60168	1.506	0.0011021	0.68148	0.00049871	2.1875	0.0016008	731.808761980241	9.5849	0.17735	9.5849	9.5317	9.709	0	462	40	1.01562323939346	0.0261901914841369	1.01562323939346	410.629261117767	0	10.5890241189111						552	21	5	NaN	NaN	NaN	2.1832E-07	1	17307	127.03	125.77	1	268940			4898	1516	4167	4264	4898	4898		
EMNDAAMFYTNR	12	Oxidation (M)	_EM(Oxidation (M))NDAAMFYTNR_	EM(1)NDAAMFYTNR	EM(54)NDAAM(-54)FYTNR	0	1	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.805576	1477.5966	1.5137	0.0011199	1.7514	0.0012957	3.2652	0.0024156	739.806658865209	7.935	0.097524	7.935	7.8995	7.997	0	468	31	1.01159370163332	0.0201504747888646	1.01159370163332	408.958544501458	0	8.14626349231105						193	12	3	NaN	NaN	NaN	0.00078301	1	17804	67.548	67.187	2	53395			4899	1516	4167	4265	4899	4899	536	
EMNPALGIDCLHK	13	Unmodified	_EMNPALGIDCLHK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.363061	1496.71157	1.5702	0.0011767	-4.1041	-0.0030754	-2.5338	-0.0018988	749.359624645656	9.2568	0.26605	9.2568	9.1858	9.4519	0	426	61	1.03977710643793	0.0402175744908813	1.03977710643793	420.302503751141	0	16.2568950101465						857	31	3	NaN	NaN	NaN	8.4332E-17	1	18437	178.65	157.56	1	506040			4900	1113	4168	4266	4900	4900		
EMNPALGIDCLHK	13	Unmodified	_EMNPALGIDCLHK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.911133	1496.71157	-0.8596	-0.00042972	-0.27241	-0.00013618	-1.132	-0.00056591	499.911106826139	9.2568	0.19511	9.2568	9.1858	9.381	0	732	34	0.833184998970724	0.0224359291106897	0.833184998970724	505.186499415605	0	13.6036156466665						476	23	5	NaN	NaN	NaN	0.00024848	1	18439	119.94	90.18	1	126510			4901	1113	4168	4266	4901	4901		
EMNPALGIDCLHK	13	Oxidation (M)	_EM(Oxidation (M))NPALGIDCLHK_	EM(1)NPALGIDCLHK	EM(49)NPALGIDCLHK	0	1	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.360518	1512.70648	2.6814	0.0020308	0.82399	0.00062406	3.5054	0.0026549	757.361317099944	7.7576	0.27502	7.7576	7.6688	7.9438	0	444	46	1.02770517576159	0.0301860841315895	1.02770517576159	415.382478237159	0	12.2007466057209						548	26	4	NaN	NaN	NaN	0.046779	1	18879	48.822	44.576	1	124620			4902	1113	4168	4267	4902	4902	395	
EMQADDELLHPLGPDDK	17	Unmodified	_EMQADDELLHPLGPDDK_			0	0	0	Q9BVS4	Q9BVS4	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.631529	1921.87276	1.3742	0.0008817	0.74224	0.00047624	2.1164	0.0013579	641.966109022273	10.871	0.0887	10.871	10.835	10.924	0	567	31	0.944945209309785	0.0202398580816178	0.944945209309785	571.788838639288	0	12.2471915119454						206	11	4	NaN	NaN	NaN	0.0071233	1	30095	30.027	28.179	1	46363			4903	2770	4169	4268	4903	4903		
EMQDLSEFCSDK	12	Unmodified	_EMQDLSEFCSDK_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.802699	1487.59084	1.3749	0.001024	-0.1868	-0.00013913	1.1881	0.0008849	744.803093045746	8.9908	0.15079	8.9908	8.9464	9.0972	0	456	34	1.01965166402748	0.0221517485964946	1.01965166402748	412.190461121954	0	8.95476346557575						352	18	4	NaN	NaN	NaN	0.00032855	1	18156	110.52	104.66	1	130400			4904	2468	4170	4269	4904	4904		
EMQDVDLAEVK	11	Unmodified	_EMQDVDLAEVK_			0	0	0	Q92597	Q92597	Q92597	NDRG1	Protein NDRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.80811	1275.60167	1.4253	0.00091047	1.6939	0.0010821	3.1192	0.0019926	638.809518572959	8.7245	0.14209	8.7245	8.6712	8.8133	0	519	31	0.97729762293174	0.0201978857694813	0.97729762293174	395.673529820477	0	8.17741552808394						383	17	4	NaN	NaN	NaN	0.00054833	1	11638	76.85	51.596	1	128850			4905	2414	4171	4270	4905	4905		
EMQDVQGALQCYTR	14	Unmodified	_EMQDVQGALQCYTR_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.882346	1697.75014	2.064	0.0017541	1.8972	0.0016124	3.9612	0.0033665	849.883885831003	10.454	0.088684	10.454	10.41	10.498	0	315	28	1.11400032671325	0.0180095545352803	1.11400032671325	449.816379074825	0	7.27198405202597						198	11	4	NaN	NaN	NaN	1.0151E-05	1	24422	121.69	109.73	1	40161			4906	161	4172	4271	4906	4906		
EMQENDASMR	10	Unmodified	_EMQENDASMR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.744987	1209.47542	1.3196	0.00079931	0.28299	0.00017142	1.6025	0.00097073	605.745178787395	2.836	0.23942	2.836	2.8094	3.0488	0	633	31	0.900343422309015	0.0203044701825483	0.900343422309015	364.730862186053	0	8.22538015207499						275	28	2	NaN	NaN	NaN	0.00055671	1	9707	76.605	62.957	1	66791			4907	927	4173	4272	4907	4907		
EMQNLSFQDCYSSK	14	Unmodified	_EMQNLSFQDCYSSK_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.866362	1735.71817	2.8776	0.0025002	-1.472	-0.001279	1.4055	0.0012212	868.865320979226	9.1504	0.1862	9.1504	9.0972	9.2834	0	348	55	1.09197348738011	0.0360811878816949	1.09197348738011	440.844182650977	0	14.5664541901513						689	22	5	NaN	NaN	NaN	6.7722E-18	1	25482	184.43	176.43	1	276110			4908	901	4174	4273	4908	4908		
EMQNLSFQDCYSSK	14	Oxidation (M)	_EM(Oxidation (M))QNLSFQDCYSSK_	EM(1)QNLSFQDCYSSK	EM(100)QNLSFQDCYSSK	0	1	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.863819	1751.71309	2.3652	0.002074	-0.68033	-0.00059656	1.6849	0.0014774	877.364254222474	7.5092	0.088664	7.5092	7.4738	7.5624	0	363	34	1.08195024817156	0.0220602476695482	1.08195024817156	436.766062612807	0	8.9053702156591						248	11	4	NaN	NaN	NaN	0.00032647	1	25936	104.04	97.665	1	46645			4909	901	4174	4274	4909	4909	306	
EMQPTHPIR	9	Unmodified	_EMQPTHPIR_			0	0	0	P27348;P31946;P63104	P27348;P31946;P63104	P63104	YWHAQ;YWHAB;YWHAZ	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	370.190447	1107.54951	0.49699	0.00018398	-0.39303	-0.0001455	0.10396	3.8484E-05	370.190433317967	2.8094	0.40788	2.8094	2.7562	3.1641	0	903	34	0.716455593386714	0.0226147498164887	0.716455593386714	435.803146426047	0	13.756022308481						543	47	4	NaN	NaN	NaN	0.031724	1	6916	53.679	36.284	1	206860			4910	1427;863;932	4175	4275	4910	4910		
EMQPTHPIR	9	Unmodified	_EMQPTHPIR_			0	0	0	P27348;P31946;P63104	P27348;P31946;P63104	P63104	YWHAQ;YWHAB;YWHAZ	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	370.190447	1107.54951	0.029989	1.1102E-05	0.85861	0.00031785	0.8886	0.00032895	370.190871998728	2.8094	0.34581	2.8094	2.7651	3.1109	0	849	37	0.753417699604308	0.0246173593262057	0.753417699604308	458.286322328677	0	14.9741625090246						567	40	4	NaN	NaN	NaN	0.0069869	1	6917	63.301	51.235	1	186140			4911	1427;863;932	4175	4275	4911	4911		
EMSCIAEDVIIVTSSLTK	18	Unmodified	_EMSCIAEDVIIVTSSLTK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.502491	1994.99043	0.88289	0.00088157	0.38193	0.00038136	1.2648	0.0012629	998.504114438417	20.093	0.035463	20.093	20.075	20.111	0	183	31	1.20177511391933	0.0198913087124573	1.20177511391933	484.672624347179	0	8.02211052941942						94	5	5	NaN	NaN	NaN	0.058375	1	31541	16.102	15.626	1	21581			4912	3452	4176	4276	4912	4912		
EMSGDLEEGMLAVVK	15	Unmodified	_EMSGDLEEGMLAVVK_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.386399	1606.75824	1.3913	0.0011191	-0.41073	-0.00033038	0.98058	0.00078876	804.387256073253	15.234	0.20393	15.234	15.118	15.322	0	393	37	1.0618830335572	0.0240939446089616	1.0618830335572	428.968771808651	0	9.7332281431307						319	24	4	NaN	NaN	NaN	0.0012534	1	21806	54.27	45.008	1	70900			4913	1176	4177	4277	4913	4913		
EMSGDLEEGMLAVVK	15	Unmodified	_EMSGDLEEGMLAVVK_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.386399	1606.75824	1.6974	0.0013654	0.92353	0.00074287	2.6209	0.0021082	804.387483738355	15.234	0.062039	15.234	15.189	15.251	0	270	58	1.14398322290989	0.0379626683497278	1.14398322290989	462.134770959071	0	15.3357747661467						269	8	4	NaN	NaN	NaN	2.8562E-08	1	21807	122.51	100.5	1	59110			4914	1176	4177	4277	4914	4914		
EMSSSTLNLVVAGAPK	16	Unmodified	_EMSSSTLNLVVAGAPK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.42163	1602.82871	1.516	0.0012165	1.2293	0.0009864	2.7453	0.0022029	802.422758560877	12.352	0.1064	12.352	12.316	12.423	0	231	67	1.16991841121525	0.0438873183410309	1.16991841121525	472.621707424992	0	17.7295263753447						323	13	3	NaN	NaN	NaN	2.6721E-06	1	21685	63.908	56.769	1	68150			4915	2345	4178	4278	4915	4915		
EMSWIADTYASTIGHYDINAHACVTGK	27	Unmodified	_EMSWIADTYASTIGHYDINAHACVTGK_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	753.597012	3010.35894	0.25905	0.00019522	1.3309	0.0010029	1.5899	0.0011981	753.848497466987	15.65	0.079801	15.65	15.615	15.695	0	477	22	1.0055473068722	0.0141141050876044	1.0055473068722	809.173319062716	0	11.3577523218291						135	10	4	NaN	NaN	NaN	0.032929	1	38242	24.599	24.158	1	26172			4916	472	4179	4279	4916	4916		
EMTLDEWK	8	Unmodified	_EMTLDEWK_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.241875	1050.4692	0.43149	0.00022707	0.58411	0.00030738	1.0156	0.00053445	526.242086709673	9.9573	0.23938	9.9573	9.9041	10.143	0	672	61	0.873923798053065	0.0407048667426549	0.873923798053065	354.632105068814	0	16.517747441656						483	28	2	NaN	NaN	NaN	0.00060154	1	5471	105.04	85.553	1	330390			4917	2296	4180	4280	4917	4917		
EMVANWDSLR	10	Unmodified	_EMVANWDSLR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.790055	1219.56556	1.3517	0.00082558	0.45643	0.00027878	1.8081	0.0011044	611.292406445626	10.995	0.15074	10.995	10.942	11.092	0	570	46	0.942920803299286	0.0303492849683255	0.942920803299286	381.94338565534	0	12.2934064159593						441	18	4	NaN	NaN	NaN	0.00064025	1	10001	74.269	60.621	1	151010			4918	3161	4181	4281	4918	4918		
EMVLELIR	8	Unmodified	_EMVLELIR_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.786253	1001.55795	-0.097543	-4.8946E-05	-1.2386	-0.00062152	-1.3362	-0.00067047	501.785685100185	14.107	0.17734	14.107	14.045	14.223	0	660	73	0.882057989648486	0.0488322888130754	0.882057989648486	358.158978037165	0	19.8283138543723						715	21	4	NaN	NaN	NaN	0.00033265	1	4339	121.52	0	1	326250			4919	2473	4182	4282	4919	4919		
EMVQNLMVLR	10	Unmodified	_EMVQNLMVLR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.828126	1231.6417	0.93226	0.00057505	-0.49276	-0.00030395	0.4395	0.0002711	616.82901038107	13.105	0.16849	13.105	13.052	13.221	0	534	37	0.967195187796614	0.0242542357032265	0.967195187796614	391.733082459551	0	9.82344270795045						484	20	4	NaN	NaN	NaN	0.00063673	1	10370	87.251	46.226	1	172450			4920	653	4183	4283	4920	4920		
EMVVQLLDDFK	11	Unmodified	_EMVVQLLDDFK_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.844496	1335.67444	0.46725	0.00031252	-0.32356	-0.00021641	0.14369	9.6105E-05	668.84422101609	17.876	0.1241	17.876	17.832	17.956	0	486	37	0.999498404980629	0.0242006280672292	0.999498404980629	404.46685620466	0	9.79326420507908						347	15	4	NaN	NaN	NaN	3.8592E-05	1	13464	87.895	75.299	1	117260			4921	2621	4184	4284	4921	4921		
EMWTEVPK	8	Unmodified	_EMWTEVPK_			0	0	0	P62316	P62316	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.24696	1018.47937	0.54646	0.00027883	0.87868	0.00044835	1.4251	0.00072718	510.247443455699	8.4406	0.15963	8.4406	8.3785	8.5382	0	621	43	0.908462957275599	0.028418378530508	0.908462957275599	368.797624672757	0	11.5366624639635						336	19	3	NaN	NaN	NaN	0.038353	1	4699	58.286	43.751	1	75016			4922	1386	4185	4285	4922	4922		
ENAEQGEVDMESHR	14	Unmodified	_ENAEQGEVDMESHR_			0	0	0	P14209	P14209	P14209	CD99	CD99 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.841733	1629.66891	2.4484	0.0019975	1.0667	0.00087029	3.5151	0.0028678	815.841674515178	3.5366	0.06206	3.5366	3.5278	3.5898	0	453	19	1.02166545906632	0.0120836051927826	1.02166545906632	412.672483474822	0	4.88082602772141						72	8	2	NaN	NaN	NaN	0.00019096	1	22454	66.953	65.243	1	14794			4923	693	4186	4286	4923	4923		
ENAEVDGDDDAEEMEAK	17	Unmodified	_ENAEVDGDDDAEEMEAK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.862725	1865.7109	3.0134	0.0028141	-1.8148	-0.0016948	1.1986	0.0011193	933.861152658604	5.5139	0.26595	5.5139	5.4254	5.6913	0	333	88	1.10198982404297	0.0581188248092452	1.10198982404297	444.642223307318	0	23.4503830392754						1107	31	5	NaN	NaN	NaN	1.9286E-06	1	28820	117.77	75.321	1	310370			4924	527	4187	4287	4924	4924		
ENAEVDGDDDAEEMEAK	17	Oxidation (M)	_ENAEVDGDDDAEEM(Oxidation (M))EAK_	ENAEVDGDDDAEEM(1)EAK	ENAEVDGDDDAEEM(160)EAK	0	1	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.860182	1881.70581	3.378	0.0031816	-1.2492	-0.0011765	2.1289	0.0020051	941.858633569102	3.5721	0.044306	3.5721	3.5544	3.5987	0	345	28	1.09397730668811	0.0180368604002248	1.09397730668811	441.381554760941	0	7.27724189321503						85	6	2	NaN	NaN	NaN	1.5369E-14	1	29177	155.28	155.09	1	18241			4925	527	4187	4288	4925	4925	102	
ENAGVDPTLAIPMIQK	16	Unmodified	_ENAGVDPTLAIPMIQK_			0	0	0	Q92917	Q92917	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.950555	1695.88656	1.795	0.0015239	-0.97417	-0.00082702	0.82082	0.00069684	848.950523027736	14.622	0.14189	14.622	14.568	14.71	0	348	28	1.09197348738011	0.0180343754835834	1.09197348738011	440.926210058532	0	7.28207133657349						299	17	4	NaN	NaN	NaN	0.00050405	1	24387	84.999	76.526	1	63108			4926	2444	4188	4289	4926	4926		
ENASPAPGTTAEEAMSR	17	Unmodified	_ENASPAPGTTAEEAMSR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.88614	1717.75773	2.9238	0.0025141	-3.5221	-0.0030286	-0.59828	-0.00051445	859.88289513901	6.1436	0.097534	6.1436	6.1081	6.2057	0	378	43	1.07192009927972	0.0280902306383146	1.07192009927972	432.784219525599	0	11.3413383621279						259	12	3	NaN	NaN	NaN	0.01857	1	24983	49.967	45.439	1	48240			4927	1081	4189	4290	4927	4927		
ENAYDLEANLAVLK	14	Unmodified	_ENAYDLEANLAVLK_			0	0	0	Q9UBQ5	Q9UBQ5	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.90667	1561.79879	1.2099	0.00094601	3.4418	0.0026911	4.6517	0.0036372	782.411436634481	14.941	0.15962	14.941	14.87	15.03	0	381	37	1.06991323971056	0.0240773390598485	1.06991323971056	432.319040940142	0	9.72891234952868						298	19	4	NaN	NaN	NaN	0.00032621	1	20401	66.953	55.982	1	82796			4928	3184	4190	4291	4928	4928		
ENCGIYFPEIK	11	Unmodified	_ENCGIYFPEIK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.32647	1368.63839	1.5247	0.0010449	1.5224	0.0010433	3.047	0.0020882	685.328045862033	12.804	0.18627	12.804	12.724	12.91	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.102554348906	0	9.79626342348939						452	22	4	NaN	NaN	NaN	0.045636	1	14446	37.749	36.247	1	104300			4929	2001	4191	4292	4929	4929		
ENCLNSDVVEQIYK	14	Unmodified	_ENCLNSDVVEQIYK_			0	0	0	Q9HD67	Q9HD67	Q9HD67	MYO10	Unconventional myosin-X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.903802	1709.79305	1.99	0.0017033	6.9004	0.0059061	8.8905	0.0076094	856.412765016094	11.695	0.14187	11.695	11.651	11.793	0	342	37	1.09598084995137	0.0240408672249111	1.09598084995137	442.515130782866	0	9.7067822897061						255	17	4	NaN	NaN	NaN	0.00022316	1	24742	56.938	54.954	1	66829			4930	2972	4192	4293	4930	4930		
ENCMYQACPTQDCNK	15	Unmodified	_ENCMYQACPTQDCNK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.86297	1917.71139	3.2248	0.0030954	-2.1012	-0.0020169	1.1236	0.0010785	959.860872302162	4.5741	0.070927	4.5741	4.5475	4.6184	0	318	52	1.11199926528787	0.0340321108810946	1.11199926528787	448.591130430085	0	13.7288787570558						352	9	4	NaN	NaN	NaN	1.3572E-12	1	30002	142.08	140.24	1	60796			4931	865	4193	4294	4931	4931		
ENDAHLVEVNLNNIK	15	Unmodified	_ENDAHLVEVNLNNIK_			0	0	0	Q9NYL9	Q9NYL9	Q9NYL9	TMOD3	Tropomodulin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.632081	1720.87441	0.21128	0.00012141	-1.1214	-0.00064437	-0.91008	-0.00052296	574.63081559046	10.64	0.15072	10.64	10.56	10.711	0	654	19	0.886123392477847	0.0121911333989362	0.886123392477847	536.643815282529	0	7.3830534159913						177	18	3	NaN	NaN	NaN	0.0026304	1	25084	64.266	57.889	1	53619			4932	3119	4194	4295	4932	4932		
ENDAVTIQVLNQLIQK	16	Unmodified	_ENDAVTIQVLNQLIQK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.338786	1824.99453	-0.7971	-0.0004857	0.33541	0.00020438	-0.46169	-0.00028132	609.338985327647	17.982	0.13301	17.982	17.929	18.062	0	621	31	0.908462957275599	0.0202903977808542	0.908462957275599	549.922240684797	0	12.282439171208						259	16	4	NaN	NaN	NaN	1.7666E-06	1	27864	124.46	107.04	1	63482			4933	2605	4195	4296	4933	4933		
ENDPSSVLLFLVGSK	15	Unmodified	_ENDPSSVLLFLVGSK_			0	0	0	Q9BZG1	Q9BZG1	Q9BZG1	RAB34	Ras-related protein Rab-34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.930145	1603.84574	0.77505	0.00062231	-0.75924	-0.00060962	0.015815	1.2698E-05	802.929307771995	19.525	0.1064	19.525	19.463	19.57	0	459	34	1.01763759082241	0.0221548084259287	1.01763759082241	411.101326734582	0	8.95001444481744						243	13	3	NaN	NaN	NaN	9.5434E-12	1	21721	133.13	117.51	1	73442			4934	2810	4196	4297	4934	4934		
ENDWYLAYK	9	Unmodified	_ENDWYLAYK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.279846	1200.54514	0.92615	0.00055688	1.0107	0.00060773	1.9369	0.0011646	601.280363950759	11.119	0.133	11.119	11.066	11.199	0	579	40	0.936845902828289	0.0263318671085498	0.936845902828289	379.549930951129	0	10.6679853246861						360	16	3	NaN	NaN	NaN	0.042914	1	9466	31.952	20.592	1	87150			4935	1063	4197	4298	4935	4935		
ENDYYTPTGEFR	12	Unmodified	_ENDYYTPTGEFR_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.32297	1490.63139	1.4212	0.0010607	0.59793	0.00044625	2.0191	0.0015069	746.323264246277	8.5116	0.14187	8.5116	8.4672	8.6091	0	495	64	0.993446994398923	0.0423364838869629	0.993446994398923	401.589765959812	0	17.1140471022449						672	17	4	NaN	NaN	NaN	2.0359E-07	1	18234	132.44	119.84	1	200690			4936	1097	4198	4299	4936	4936		
ENEMLVTVAHFHK	13	Unmodified	_ENEMLVTVAHFHK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.929292	1553.76605	-0.30088	-0.00015614	-0.79471	-0.0004124	-1.0956	-0.00056853	518.928766436922	9.1592	0.070939	9.1592	9.1238	9.1947	0	738	31	0.829104889055312	0.020400551942483	0.829104889055312	502.543659651964	0	12.3653450455187						167	9	3	NaN	NaN	NaN	0.0020612	1	20172	43.168	39.663	1	45343			4937	2452	4199	4300	4937	4937		
ENEQSLLEYLEK	12	Unmodified	_ENEQSLLEYLEK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.869753	1493.72495	0.17046	0.00012748	3.4909	0.0026108	3.6614	0.0027383	747.872924638505	14.861	0.22169	14.861	14.719	14.941	0	447	43	1.02569221487577	0.0281795132980842	1.02569221487577	414.616623490149	0	11.3910337680221						404	26	4	NaN	NaN	NaN	0.0013493	1	18350	75.474	54.386	1	109950			4938	1218	4200	4301	4938	4938		
ENFCNIHVSLVPQPSSTGEQK	21	Unmodified	_ENFCNIHVSLVPQPSSTGEQK_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	791.049746	2370.12741	1.4364	0.0011363	-0.67185	-0.00053147	0.76455	0.0006048	791.38375142773	11.341	0.1508	11.341	11.261	11.412	0	561	82	0.948993180460448	0.054696875418728	0.948993180460448	573.459814589778	0	33.0523555722972						757	18	4	NaN	NaN	NaN	0.015673	1	36211	38.668	28.757	1	164940			4939	741	4201	4302	4939	4939		
ENFQNWLK	8	Unmodified	_ENFQNWLK_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.769448	1077.52434	1.0881	0.00058734	0.13649	7.3674E-05	1.2246	0.00066101	539.769494726306	11.305	0.23947	11.305	11.243	11.483	0	648	88	0.890187667287968	0.0589770403391493	0.890187667287968	361.114494146745	0	23.9246901198133						645	28	2	NaN	NaN	NaN	0.0020796	1	6143	90.308	62.604	1	669490			4940	1001	4202	4303	4940	4940		
ENFSCLTR	8	Unmodified	_ENFSCLTR_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.737291	1025.46003	0.91602	0.00047059	0.95985	0.00049311	1.8759	0.0009637	513.737641416495	6.1081	0.25718	6.1081	6.0195	6.2767	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	345.65446551154	0	9.92341465933089						553	30	4	NaN	NaN	NaN	0.0010069	1	4868	105.81	82.233	1	236710			4941	1022	4203	4304	4941	4941		
ENGAFTVLVDNYVK	14	Unmodified	_ENGAFTVLVDNYVK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.901388	1567.78822	1.1932	0.00093657	2.3317	0.0018302	3.525	0.0027667	785.406349884698	15.34	0.15961	15.34	15.269	15.429	0	387	34	1.06589869032374	0.0220845924039434	1.06589869032374	430.682429499344	0	8.92340519542648						340	19	4	NaN	NaN	NaN	0.0053457	1	20592	65.879	60.728	1	77319			4942	1036	4204	4305	4942	4942		
ENGELLPILR	10	Unmodified	_ENGELLPILR_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.332413	1152.65027	-0.1058	-6.108E-05	2.3462	0.0013545	2.2404	0.0012935	577.836444766241	14.028	0.16847	14.028	13.939	14.107	0	630	76	0.902373728295776	0.0507154792608258	0.902373728295776	365.756571089566	0	20.5563606452022						505	20	3	NaN	NaN	NaN	3.857E-05	1	8143	114.64	103.94	1	107420			4943	377	4205	4306	4943	4943		
ENGPVVETVQVPLSK	15	Unmodified	_ENGPVVETVQVPLSK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.435595	1594.85664	1.8255	0.0014576	-0.26031	-0.00020784	1.5652	0.0012497	798.434649122118	10.871	0.07094	10.871	10.835	10.906	0	399	28	1.0578662689527	0.0180766890154731	1.0578662689527	427.373374271253	0	7.30290378560159						123	9	3	NaN	NaN	NaN	0.053032	1	21437	37.146	32.591	1	25349			4944	2345	4206	4307	4944	4944		
ENIAYLTHTER	11	Unmodified	_ENIAYLTHTER_			0	0	0	Q9UBB9	Q9UBB9	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.838591	1345.66263	1.5108	0.001018	0.63852	0.00043026	2.1493	0.0014483	673.839042869413	5.8864	0.1154	5.8864	5.8509	5.9663	0	468	25	1.01159370163332	0.0161203791387572	1.01159370163332	409.330336446175	0	6.52293525142875						155	14	2	NaN	NaN	NaN	0.035686	1	13775	44.598	36.124	1	45942			4945	3169	4207	4308	4945	4945		
ENIIAVATTNNLYIFQDK	18	Unmodified	_ENIIAVATTNNLYIFQDK_			0	0	0	P63151	P63151	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.04149	2066.06842	0.69153	0.00071507	0.80492	0.00083232	1.4964	0.0015474	1034.54364785828	17.654	0.088666	17.654	17.61	17.699	0	108	34	1.25141139212444	0.0217980777647078	1.25141139212444	504.570806871793	0	8.78901515138114						271	11	4	NaN	NaN	NaN	0.00014298	1	32817	63.947	59.64	1	60205			4946	1428	4208	4309	4946	4946		
ENILHVSENVIFTDVNSILR	20	Unmodified	_ENILHVSENVIFTDVNSILR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.413013	2311.21721	0.11081	8.5482E-05	-1.342	-0.0010352	-1.2312	-0.00094976	771.746204548144	19.978	0.03549	19.978	19.969	20.004	0	609	64	0.916577990479294	0.0425714810140091	0.916577990479294	553.954128388244	0	25.7290136838005						227	5	5	NaN	NaN	NaN	3.6166E-12	1	35728	178.03	168.9	1	94920			4947	565	4209	4310	4947	4947		
ENISEWR	7	Unmodified	_ENISEWR_			0	0	0	P60891	P60891	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.224874	932.435195	-1.5459	-0.00072227	0.94327	0.00044072	-0.60261	-0.00028156	467.22520365165	5.8509	0.11524	5.8509	5.7978	5.913	0	780	28	0.800512323802183	0.0183975615701674	0.800512323802183	325.373717747359	0	7.47781492874373						204	14	3	NaN	NaN	NaN	0.025025	1	2911	63.301	38.451	1	49291			4948	1313	4210	4311	4948	4948		
ENIVEAIIHSPELIR	15	Unmodified	_ENIVEAIIHSPELIR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.324588	1731.95193	-0.94108	-0.00054425	1.484	0.00085826	0.54297	0.00031401	578.325370316402	18.231	0.20394	18.231	18.151	18.355	0	651	82	0.888155670855968	0.0549096508421409	0.888155670855968	537.847111267081	0	33.2520503502127						704	24	5	NaN	NaN	NaN	3.1443E-06	1	25391	108.24	82.631	1	260760			4949	429	4211	4312	4949	4949		
ENIVEAIIHSPELIR	15	Unmodified	_ENIVEAIIHSPELIR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.983244	1731.95193	1.4169	0.0012284	-0.41546	-0.0003602	1.0014	0.00086821	866.98308637655	18.248	0.11531	18.248	18.186	18.302	0	252	127	1.15595906938629	0.0839118445007065	1.15595906938629	466.684047570687	0	33.8769081603403						1126	14	3	NaN	NaN	NaN	2.2289E-06	1	25392	102.57	88.204	1	276580			4950	429	4211	4312	4950	4950		
ENLATVEGNFASIDER	16	Unmodified	_ENLATVEGNFASIDER_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.92358	1763.83261	2.5544	0.0022553	-0.16079	-0.00014197	2.3936	0.0021133	882.923796190471	12.635	0.133	12.635	12.573	12.706	0	321	58	1.10999792833052	0.0380358918775918	1.10999792833052	448.06428520124	0	15.353654516957						600	16	6	NaN	NaN	NaN	2.7657E-12	1	26237	159.82	141.72	1	253290			4951	1684	4212	4313	4951	4951		
ENLESWLNYLK	11	Unmodified	_ENLESWLNYLK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.858992	1407.70343	0.10404	7.3337E-05	1.3953	0.00098348	1.4993	0.0010568	704.860126223167	18.231	0.088682	18.231	18.186	18.275	0	486	58	0.999498404980629	0.0383256164617212	0.999498404980629	404.254841670643	0	15.5010912848461						270	11	3	NaN	NaN	NaN	0.00086543	1	15699	83.623	65.287	1	59551			4952	2769	4213	4314	4952	4952		
ENLFMDLLR	9	Unmodified	_ENLFMDLLR_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.799891	1149.58523	-0.56222	-0.00032372	-1.0907	-0.00062805	-1.653	-0.00095177	575.799333664265	18.665	0.12415	18.665	18.621	18.745	0	627	43	0.90440375274676	0.028418378530508	0.90440375274676	366.590964928052	0	11.5191039129918						341	15	4	NaN	NaN	NaN	0.0012131	1	8057	74.486	49.232	1	121850			4953	2422	4214	4315	4953	4953		
ENLISALEEAK	11	Unmodified	_ENLISALEEAK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.824618	1215.63468	0.86893	0.00052903	-2.0284	-0.0012349	-1.1594	-0.0007059	608.825011987971	14.001	0.41674	14.001	13.815	14.232	0	552	67	0.955063035883597	0.0445277082686212	0.955063035883597	386.875777734416	0	18.0372301302775						1377	48	5	NaN	NaN	NaN	0.0008264	1	9903	81.099	55.845	1	768510			4954	801	4215	4316	4954	4954		
ENLLDFIK	8	Unmodified	_ENLLDFIK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.276575	990.538597	-0.026527	-1.3165E-05	-0.62683	-0.00031108	-0.65336	-0.00032425	496.276430509125	16.209	0.38129	16.209	16.12	16.502	0	663	49	0.880024865079826	0.0325322604149904	0.880024865079826	357.387287330098	0	13.2116906712347						1020	44	5	NaN	NaN	NaN	0.0028639	1	4070	101.41	58.577	1	1850500			4955	554	4216	4317	4955	4955		
ENLLEEQGSIALR	13	Unmodified	_ENLLEEQGSIALR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.391187	1470.76782	0.90086	0.00066339	-2.7573	-0.0020305	-1.8564	-0.0013671	736.390388359834	12.112	0.18624	12.112	12.05	12.236	0	438	37	1.03173026378327	0.0241505321586708	1.03173026378327	417.11716808949	0	9.76379382818516						312	22	4	NaN	NaN	NaN	0.00020407	1	17615	103.69	94.424	1	90504			4956	1703	4217	4318	4956	4956		
ENLTELSGGQR	11	Unmodified	_ENLTELSGGQR_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.301841	1202.58913	1.2383	0.00074581	-2.9131	-0.0017546	-1.6749	-0.0010088	602.80412525929	5.7889	0.34588	5.7889	5.6559	6.0017	0	612	55	0.914549654013882	0.0364974218210178	0.914549654013882	370.509780021455	0	14.7861318091432						866	40	5	NaN	NaN	NaN	2.9169E-05	1	9536	116.13	72.397	1	214960			4957	423	4218	4319	4957	4957		
ENMAYTVECLR	11	Unmodified	_ENMAYTVECLR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.313037	1384.61152	1.405	0.0009741	0.50956	0.00035328	1.9146	0.0013274	693.313476309091	9.6824	0.18621	9.6824	9.6292	9.8154	0	495	34	0.993446994398923	0.0221885084340552	0.993446994398923	401.872489428827	0	8.97576938818099						282	22	4	NaN	NaN	NaN	0.00025414	1	14957	107.08	65.282	1	73365			4958	811	4219	4320	4958	4958		
ENMEAISPLK	10	Unmodified	_ENMEAISPLK_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.289356	1130.56416	0.92702	0.00052496	2.6988	0.0015283	3.6258	0.0020533	566.291362834585	8.547	0.21292	8.547	8.485	8.6979	0	633	55	0.900343422309015	0.0365429879949484	0.900343422309015	365.017903314986	0	14.8152855102468						422	25	3	NaN	NaN	NaN	0.015211	1	7539	43.272	38.732	1	125300			4959	470	4220	4321	4959	4959		
ENNTHPEWSFTTVR	14	Unmodified	_ENNTHPEWSFTTVR_			0	0	0	Q9P289	Q9P289	Q9P289	STK26	Serine/threonine-protein kinase 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.400075	1716.7856	2.5096	0.0021568	0.41382	0.00035564	2.9235	0.0025124	859.400304784741	8.9996	0.10643	8.9996	8.9553	9.0617	0	357	31	1.08596037261705	0.020047861495702	1.08596037261705	438.454907266056	0	8.09429466730688						210	13	3	NaN	NaN	NaN	0.0095192	1	24956	46.068	39.692	1	44100			4960	3155	4221	4322	4960	4960		
ENPGFDFSGAEISGNYTK	18	Unmodified	_ENPGFDFSGAEISGNYTK_			0	0	0	Q8WVJ2	Q8WVJ2	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.934145	1931.85374	1.8133	0.0017533	2.1589	0.0020875	3.9722	0.0038409	967.437309439367	12.591	0.11527	12.591	12.547	12.662	0	231	61	1.16991841121525	0.0398920741841871	1.16991841121525	471.931432364999	0	16.0919971249946						524	14	4	NaN	NaN	NaN	0.01076	1	30348	56.08	54.606	1	113350			4961	2379	4222	4323	4961	4961		
ENPGLTQDIIMK	12	Unmodified	_ENPGLTQDIIMK_			0	0	0	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.852852	1357.69115	1.5457	0.0010509	-1.9725	-0.001341	-0.42672	-0.0002901	679.853475719825	10.507	0.16852	10.507	10.436	10.605	0	504	55	0.987393073566096	0.0363210277631717	0.987393073566096	399.501839138363	0	14.6955835312645						508	20	4	NaN	NaN	NaN	4.1945E-05	1	14129	81.799	67.804	1	123410			4962	2747	4223	4324	4962	4962		
ENPHDAVVFHPK	12	Unmodified	_ENPHDAVVFHPK_			0	0	0	P08397	P08397	P08397	HMBS	Porphobilinogen deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.901843	1388.6837	0.017149	7.9556E-06	-0.74483	-0.00034553	-0.72768	-0.00033757	463.901505701806	3.9445	0.079802	3.9445	3.9268	4.0066	0	822	22	0.771863999559055	0.0143391285682861	0.771863999559055	468.338576936923	0	8.70045380018126						109	10	2	NaN	NaN	NaN	0.062342	1	15098	11.957	9.4782	1	28310			4963	582	4224	4325	4963	4963		
ENPIHIWDAFTGELR	15	Unmodified	_ENPIHIWDAFTGELR_			0	0	0	Q9BUR4	Q9BUR4	Q9BUR4	WRAP53	Telomerase Cajal body protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.968804	1796.88458	-1.2479	-0.00074869	0.67295	0.00040375	-0.57494	-0.00034494	600.303231214335	17.663	0.097528	17.663	17.619	17.716	0	705	19	0.851531465363931	0.0122233322127752	0.851531465363931	515.520499253991	0	7.40005341104359						135	12	3	NaN	NaN	NaN	1.3628E-07	1	27134	130.71	106.91	1	23390			4964	2750	4225	4326	4964	4964		
ENPPVEDSSDEDDK	14	Unmodified	_ENPPVEDSSDEDDK_			0	0	0	Q8TCJ2	Q8TCJ2	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.318279	1574.62201	2.8362	0.0022358	-1.3272	-0.0010463	1.5089	0.0011895	788.317002085573	3.0311	0.070973	3.0311	3.0045	3.0755	0	495	37	0.993446994398923	0.0242106659523326	0.993446994398923	401.392670244909	0	9.7820859188306						168	9	3	NaN	NaN	NaN	0.02144	1	20800	51.569	51.119	1	27853			4965	2344	4226	4327	4965	4965		
ENPVVPIGCLATAAALTYGLYSFHR	25	Unmodified	_ENPVVPIGCLATAAALTYGLYSFHR_			0	0	0	Q9BW72	Q9BW72	Q9BW72	HIGD2A	HIG1 domain family member 2A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	907.467012	2719.37921	0.67067	0.00060861	1.9791	0.001796	2.6498	0.0024046	907.802803483957	20.004	0.026587	20.004	19.995	20.022	0	225	28	1.17390432875292	0.0179378628562417	1.17390432875292	708.838587721366	0	10.8314187641387						90	4	4	NaN	NaN	NaN	0.048654	1	37665	9.1553	9.0306	1	23727			4966	2775	4227	4328	4966	4966		
ENPYYDSR	8	Unmodified	_ENPYYDSR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.225071	1042.43559	1.3408	0.00070018	2.0485	0.0010698	3.3892	0.0017699	522.225837048794	3.4479	0.28385	3.4479	3.3858	3.6696	0	684	58	0.86578508874114	0.0386884208613425	0.86578508874114	351.364496598167	0	15.7010529482427						729	33	3	NaN	NaN	NaN	0.003162	1	5273	79.809	9.9048	1	207440			4967	1503	4228	4329	4967	4967		
ENQCVIISGESGAGK	15	Unmodified	_ENQCVIISGESGAGK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.869762	1547.72497	2.5151	0.0019489	-3.1091	-0.0024092	-0.594	-0.00046028	774.867675149606	5.6292	0.17739	5.6292	5.576	5.7534	0	459	46	1.01763759082241	0.030215279505817	1.01763759082241	411.228939241213	0	12.2100416220005						335	21	3	NaN	NaN	NaN	1.2542E-06	1	19968	106.47	97.66	1	68822			4968	1611	4229	4330	4968	4968		
ENQEGAANVNVR	12	Unmodified	_ENQEGAANVNVR_			0	0	0	Q8N0X7	Q8N0X7	Q8N0X7	SPG20	Spartin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.815647	1299.61674	2.1511	0.0013999	-1.343	-0.00087403	0.80808	0.00052591	650.814887300289	3.306	0.12415	3.306	3.2705	3.3947	0	585	34	0.932794566565362	0.0222838959578864	0.932794566565362	377.581058563136	0	9.02018228479892						192	15	3	NaN	NaN	NaN	0.0076961	1	12336	44.82	31.993	1	34763			4969	2235	4230	4331	4969	4969		
ENQGDETQGQQPPQR	15	Unmodified	_ENQGDETQGQQPPQR_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.385153	1710.75575	3.6306	0.0031092	-3.3101	-0.0028347	0.3205	0.00027447	856.382411775981	2.2508	0.23054	2.2508	2.2064	2.437	0	411	82	1.04982941439551	0.054327482891144	1.04982941439551	423.879063781155	0	21.9352613574315						771	27	4	NaN	NaN	NaN	6.9174E-44	1	24768	256.93	251.84	1	147610			4970	1440	4231	4332	4970	4970		
ENQLQLSCFINQEVK	15	Unmodified	_ENQLQLSCFINQEVK_			0	0	0	P54578	P54578	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.459275	1848.904	1.8391	0.001702	-2.8372	-0.0026257	-0.99812	-0.00092372	925.459510844412	14.657	0.18624	14.657	14.586	14.772	0	261	94	1.14997238118939	0.0618540097086082	1.14997238118939	464.033852971614	0	24.9591685125021						722	22	4	NaN	NaN	NaN	9.443E-12	1	28462	144.2	128.67	1	224420			4971	1252	4232	4333	4971	4971		
ENQTAVDVFR	10	Unmodified	_ENQTAVDVFR_			0	0	0	Q15382	Q15382	Q15382	RHEB	GTP-binding protein Rheb	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.793652	1177.57275	1.1778	0.00069465	0.082459	4.8634E-05	1.2602	0.00074328	589.7939285717	7.9527	0.23956	7.9527	7.864	8.1036	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	368.954836322985	0	9.04503747135118						472	28	4	NaN	NaN	NaN	0.00048283	1	8821	83.358	60.305	1	146500			4972	1837	4233	4334	4972	4972		
ENSDVIALWK	10	Unmodified	_ENSDVIALWK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.808771	1173.60299	0.57467	0.0003378	-2.2419	-0.0013178	-1.6672	-0.00097999	587.807468743419	12.768	0.11529	12.768	12.724	12.839	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.09406719012	0	9.05920261249645						216	14	3	NaN	NaN	NaN	0.0035949	1	8698	76.605	40.394	1	55980			4973	914	4234	4335	4973	4973		
ENSETVVTGSLDDLVK	16	Unmodified	_ENSETVVTGSLDDLVK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.428164	1704.84177	1.972	0.001683	3.3023	0.0028183	5.2743	0.0045013	853.431312794647	13.726	0.19504	13.726	13.655	13.85	0	324	49	1.1079963157843	0.0320368379647857	1.1079963157843	447.376976491588	0	12.9355517711189						486	23	4	NaN	NaN	NaN	9.3098E-07	1	24631	139.7	100.67	1	98908			4974	2830	4235	4336	4974	4974		
ENSSNILDNLLSR	13	Unmodified	_ENSSNILDNLLSR_			0	0	0	P16066	P16066	P16066	NPR1	Atrial natriuretic peptide receptor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.878444	1473.74234	0.55912	0.00041256	0.4631	0.00034171	1.0222	0.00075427	738.381276271605	16.023	0.18619	16.023	15.934	16.12	0	462	31	1.01562323939346	0.02014212547595	1.01562323939346	410.597539383732	0	8.14308577984343						343	22	4	NaN	NaN	NaN	0.0040511	1	17702	50.116	37.52	1	78352			4975	720	4236	4337	4975	4975		
ENTEFTDHELQEWYK	15	Unmodified	_ENTEFTDHELQEWYK_			0	0	0	P37235	P37235	P37235	HPCAL1	Hippocalcin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.958522	1967.85374	0.25325	0.00016637	-0.10481	-6.8858E-05	0.14843	9.7514E-05	657.29288605384	11.341	0.15079	11.341	11.287	11.438	0	699	55	0.85560534332665	0.0366547318720113	0.85560534332665	517.642414516261	0	22.1761634118619						652	18	5	NaN	NaN	NaN	2.219E-08	1	31061	110.44	72.936	1	312530			4976	999	4237	4338	4976	4976		
ENTEFTDHELQEWYK	15	Unmodified	_ENTEFTDHELQEWYK_			0	0	0	P37235	P37235	P37235	HPCAL1	Hippocalcin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.934145	1967.85374	2.1233	0.0020913	-0.90737	-0.0008937	1.2159	0.0011976	985.434855816541	11.341	0.053254	11.341	11.314	11.367	0	276	40	1.13998907770044	0.0259637344402126	1.13998907770044	459.798294491972	0	10.4721010470851						150	7	3	NaN	NaN	NaN	0.068903	1	31062	11.679	10.873	1	25923			4977	999	4237	4338	4977	4977		
ENTEGEYSGIEHVIVDGVVQSIK	23	Unmodified	_ENTEGEYSGIEHVIVDGVVQSIK_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.750131	2501.22856	0.99949	0.00083433	-1.5127	-0.0012627	-0.51319	-0.00042839	835.083194529205	17.61	0.1596	17.61	17.557	17.716	0	519	46	0.97729762293174	0.0303031202144891	0.97729762293174	590.383316900176	0	18.3060474157159						531	19	5	NaN	NaN	NaN	6.4278E-14	1	36833	156.96	155.11	1	149930			4978	1158	4238	4339	4978	4978		
ENTEGEYSGIEHVIVDGVVQSIK	23	Unmodified	_ENTEGEYSGIEHVIVDGVVQSIK_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.750131	2501.22856	1.2823	0.0010704	-0.28362	-0.00023675	0.99868	0.00083365	835.084523437154	17.601	0.14186	17.601	17.557	17.699	0	453	58	1.02166545906632	0.0382726935815298	1.02166545906632	617.185823675605	0	23.1204487758524						601	17	5	NaN	NaN	NaN	1.0276E-09	1	36834	85.562	83.376	1	191570			4979	1158	4238	4339	4979	4979		
ENTEGEYSSLEHESVAGVVESLK	23	Unmodified	_ENTEGEYSSLEHESVAGVVESLK_			0	0	0	P51553	P51553	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	831.725762	2492.15546	1.7075	0.0014202	-1.0343	-0.00086026	0.67321	0.00055992	832.059520533042	14.258	0.12414	14.258	14.214	14.338	0	525	40	0.973257487423603	0.0262663358758335	0.973257487423603	587.954503792969	0	15.8677540896364						375	15	5	NaN	NaN	NaN	1.6151E-06	1	36788	74.778	67.788	1	91302			4980	1188	4239	4340	4980	4980		
ENTFECQNPR	10	Unmodified	_ENTFECQNPR_			0	0	0	Q17RY6	Q17RY6	Q17RY6	LY6K	Lymphocyte antigen 6K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.777676	1293.5408	2.2082	0.0014304	0.040091	2.597E-05	2.2483	0.0014564	647.777638645139	3.51	0.12416	3.51	3.4746	3.5987	0	570	43	0.942920803299286	0.0283554323651288	0.942920803299286	381.698855543629	0	11.4784147770883						176	15	2	NaN	NaN	NaN	0.0096326	1	12168	37.591	33.698	1	39944			4981	1917	4240	4341	4981	4981		
ENTFLQEQLVELK	13	Unmodified	_ENTFLQEQLVELK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.92232	1589.83009	1.2317	0.00098036	0.97555	0.00077646	2.2073	0.0017568	795.923590077039	14.764	0.13302	14.764	14.701	14.834	0	351	37	1.08996939197032	0.0240474923010432	1.08996939197032	440.354877537169	0	9.71534669258881						207	16	2	NaN	NaN	NaN	0.0038856	1	21278	74.524	61.349	1	100570			4982	1668	4241	4342	4982	4982		
ENTIEHLLPLFLAQLK	16	Unmodified	_ENTIEHLLPLFLAQLK_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.027771	1878.06148	-0.13313	-8.3478E-05	-1.0548	-0.00066141	-1.188	-0.00074488	627.361382904035	19.995	0.044334	19.995	19.978	20.022	0	609	25	0.916577990479294	0.0162255683873757	0.916577990479294	554.71640599477	0	9.8197742849585						109	6	4	NaN	NaN	NaN	0.0014395	1	29118	82.437	81.818	1	41586			4983	906	4242	4343	4983	4983		
ENTPSEANLQEEEVR	15	Unmodified	_ENTPSEANLQEEEVR_			0	0	0	Q93062	Q93062	Q93062	RBPMS	RNA-binding protein with multiple splicing	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.902844	1743.79114	2.2057	0.0019253	-1.0549	-0.00092086	1.1507	0.0010045	872.901532646864	6.3299	0.10641	6.3299	6.2944	6.4008	0	372	40	1.07593298845566	0.0260855828537037	1.07593298845566	434.352485501564	0	10.5307095049908						260	13	4	NaN	NaN	NaN	4.4463E-08	1	25701	104.49	89.516	1	47979			4984	2456	4243	4344	4984	4984		
ENVATTDTLESTTVGTSV	18	Unmodified	_ENVATTDTLESTTVGTSV_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.939093	1823.86363	1.6004	0.001461	-1.0979	-0.0010024	0.50242	0.00045868	913.438749247038	11.713	0.20388	11.713	11.616	11.82	0	270	55	1.14398322290989	0.0359572110198465	1.14398322290989	461.664307890598	0	14.5108429972676						616	24	5	NaN	NaN	NaN	3.2461E-19	1	27823	187.47	164.52	1	153750			4985	1801	4244	4345	4985	4985		
ENVEGHDLPASEK	13	Unmodified	_ENVEGHDLPASEK_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.836245	1423.65794	3.2289	0.0023017	-3.39	-0.0024165	-0.16107	-0.00011481	712.833933806415	3.8204	0.16846	3.8204	3.776	3.9445	0	513	43	0.981336640919867	0.0282653130088721	0.981336640919867	396.865919482621	0	11.4308780177771						312	20	3	NaN	NaN	NaN	0.044123	1	16191	35.45	30.621	1	61805			4986	2516	4245	4346	4986	4986		
ENVFQEHQTLK	11	Unmodified	_ENVFQEHQTLK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.233369	1371.67828	-1.684	-0.00077166	0.65638	0.00030077	-1.0276	-0.00047089	458.233365012086	5.4697	0.088632	5.4697	5.4342	5.5228	0	837	22	0.761618911097395	0.0143491209396079	0.761618911097395	462.178624430691	0	8.70757918563493						131	11	3	NaN	NaN	NaN	0.0075304	1	14528	31.425	24.734	1	34879			4987	1742	4246	4347	4987	4987		
ENVFQEHQTLK	11	Unmodified	_ENVFQEHQTLK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.846416	1371.67828	1.5339	0.0010535	-1.9226	-0.0013205	-0.38875	-0.00026701	686.844271124429	5.4697	0.37244	5.4697	5.3278	5.7002	0	510	61	0.983355730988811	0.0403957860305609	0.983355730988811	397.827427748689	0	16.3425616407043						728	43	4	NaN	NaN	NaN	0.00051606	1	14530	90.306	77.032	1	203800			4988	1742	4246	4347	4988	4988		
ENVLFLTSGTR	11	Unmodified	_ENVLFLTSGTR_			0	0	0	Q14244	Q14244	Q14244	MAP7	Ensconsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.832777	1235.651	0.67054	0.00041495	-5.2145	-0.0032269	-4.5439	-0.0028119	618.829831175158	11.713	0.22168	11.713	11.624	11.846	0	567	55	0.944945209309785	0.0364216673662339	0.944945209309785	382.707659303123	0	14.750962202168						497	26	3	NaN	NaN	NaN	0.0040343	1	10492	46.033	34.075	1	140010			4989	1741	4247	4348	4989	4989		
ENVNATENCISAVGK	15	Unmodified	_ENVNATENCISAVGK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.380494	1604.74643	2.6539	0.0021321	-1.5868	-0.0012748	1.0671	0.00085726	803.380375106928	6.454	0.29261	6.454	6.3565	6.6491	0	414	73	1.04781950764076	0.0482211594652822	1.04781950764076	423.292070434662	0	19.480105380723						877	34	5	NaN	NaN	NaN	6.0704E-56	1	21729	293.49	260.07	1	345680			4990	74	4248	4349	4990	4990		
ENVNLAQIR	9	Unmodified	_ENVNLAQIR_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.793455	1055.57236	0.83338	0.00044069	-0.60132	-0.00031798	0.23206	0.00012271	528.793011456243	7.1723	0.18622	7.1723	7.1102	7.2964	0	639	40	0.896281965493857	0.0264049676271125	0.896281965493857	363.682146213083	0	10.7142792860101						418	22	4	NaN	NaN	NaN	0.0016855	1	5617	75.243	41.431	1	138360			4991	1107	4249	4350	4991	4991		
ENVVQSVTSVAEK	13	Unmodified	_ENVVQSVTSVAEK_			0	0	0	O76070	O76070	O76070	SNCG	Gamma-synuclein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.364638	1388.71472	1.1402	0.00079286	1.3738	0.00095526	2.514	0.0017481	695.366098908442	10.277	0.12416	10.277	10.223	10.347	0	474	34	1.00756305028564	0.0221731807232346	1.00756305028564	407.570853202681	0	8.96930686672562						225	15	3	NaN	NaN	NaN	1.2432E-05	1	15107	97.175	70.228	1	72537			4992	380	4250	4351	4992	4992		
ENYLEENLLYAPSLR	15	Unmodified	_ENYLEENLLYAPSLR_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.462341	1822.91013	1.6216	0.0014796	-0.95749	-0.00087367	0.66408	0.00060595	912.460886596612	16.12	0.2483	16.12	16.049	16.298	0	267	31	1.14597988355104	0.0199707283140815	1.14597988355104	462.471902669276	0	8.05939166443773						246	29	3	NaN	NaN	NaN	1.344E-06	1	27808	76.563	67.757	1	129770			4993	2114	4251	4352	4993	4993		
ENYSSYSSFSSPHMK	15	Unmodified	_ENYSSYSSFSSPHMK_			0	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.872501	1749.73045	2.1605	0.0018923	0.0038192	3.3451E-06	2.1643	0.0018956	875.872420540304	7.0037	0.070914	7.0037	6.9594	7.0303	0	213	22	1.18187287897418	0.0139420904160614	1.18187287897418	477.107477714763	0	5.62824962888715						113	9	3	NaN	NaN	NaN	3.8266E-06	1	25867	108.5	102.47	1	20184			4994	1960	4252	4353	4994	4994		
ENYTWSQDYTDLEVR	15	Unmodified	_ENYTWSQDYTDLEVR_			0	0	0	Q8IVD9	Q8IVD9	Q8IVD9	NUDCD3	NudC domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.92632	1917.83809	1.6551	0.0015888	0.61212	0.00058759	2.2673	0.0021764	960.427427067936	13.017	0.088682	13.017	12.972	13.061	0	267	34	1.14597988355104	0.0219602499318536	1.14597988355104	462.29900815477	0	8.85897030833411						242	11	4	NaN	NaN	NaN	2.6405E-08	1	30004	126.32	124.61	1	57865			4995	2196	4253	4354	4995	4995		
ENYVWNVLLHR	11	Unmodified	_ENYVWNVLLHR_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.589487	1441.74663	-2.4947	-0.0012014	-0.10121	-4.8744E-05	-2.5959	-0.0012501	481.589605899447	14.923	0.10642	14.923	14.879	14.985	0	798	22	0.788241307691771	0.0143231624709025	0.788241307691771	478.102385892611	0	8.68761644948421						146	13	3	NaN	NaN	NaN	0.015474	1	16723	39.01	37.366	1	38888			4996	2408	4254	4355	4996	4996		
EPAAEIEALLGMDLVR	16	Unmodified	_EPAAEIEALLGMDLVR_			0	0	0	Q12765	Q12765	Q12765	SCRN1	Secernin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.306317	1725.89712	-1.3324	-0.00076788	0.86113	0.00049627	-0.47129	-0.0002716	576.307388087043	19.942	0.017735	19.942	19.933	19.951	0	660	16	0.882057989648486	0.0101642125257622	0.882057989648486	534.169357090923	0	6.15538993347309						39	3	3	NaN	NaN	NaN	0.022501	1	25213	39.702	27.532	1	5976.5			4997	1591	4255	4356	4997	4997		
EPALNEANLSNLK	13	Unmodified	_EPALNEANLSNLK_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.87263	1411.73071	2.2097	0.001562	-0.24294	-0.00017173	1.9668	0.0013903	706.873016124898	9.7002	0.31042	9.7002	9.5672	9.8776	0	459	52	1.01763759082241	0.0342487168428018	1.01763759082241	411.579959153991	0	13.8517735649341						797	36	4	NaN	NaN	NaN	0.0052889	1	15817	60	56.392	1	342340			4998	1560	4256	4357	4998	4998		
EPCITPSGITYDR	13	Unmodified	_EPCITPSGITYDR_			0	0	0	Q9UNE7	Q9UNE7	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.856123	1507.69769	1.2679	0.00095704	0.97179	0.00073356	2.2396	0.0016906	754.857013449104	9.514	0.23941	9.514	9.4076	9.647	0	450	22	1.02367897599655	0.0140907270067592	1.02367897599655	413.767613158417	0	5.69542465749851						373	28	3	NaN	NaN	NaN	0.0038503	1	18718	65.879	60.013	1	115050			4999	3293	4257	4358	4999	4999		
EPEINIEEK	9	Unmodified	_EPEINIEEK_			0	0	0	Q8N6Y1	Q8N6Y1	Q8N6Y1	PCDH20	Protocadherin-20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.777136	1099.53972	0.71358	0.00039302	0.3268	0.00018	1.0404	0.00057302	550.777484208184	8.3874	0.30154	8.3874	8.3076	8.6091	0	654	49	0.886123392477847	0.0325187199489114	0.886123392477847	359.374908597092	0	13.1882445588712						799	35	4	NaN	NaN	NaN	0.014613	1	6692	60.709	28.581	1	498210			5000	2267	4258	4359	5000	5000		
EPELGLEELLR	11	Unmodified	_EPELGLEELLR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.353542	1296.69253	0.60778	0.00039466	-2.3351	-0.0015163	-1.7273	-0.0011216	649.3518652193	16.51	0.24828	16.51	16.457	16.706	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	391.515197173471	0	8.99919105880383						439	29	3	NaN	NaN	NaN	0.00088533	1	12258	78.816	50.72	1	118000			5001	3134	4259	4360	5001	5001		
EPELLEPIPYEFMA	14	Unmodified	_EPELLEPIPYEFMA_			0	0	0	P46778	P46778	P46778	RPL21	60S ribosomal protein L21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.407657	1676.80076	1.7913	0.0015036	-1.17	-0.00098208	0.62131	0.00052154	839.407271658997	20.066	0.12413	20.066	20.031	20.155	0	366	97	1.07994477139643	0.0641532271439396	1.07994477139643	436.109385857947	0	25.9067178540731						910	15	6	NaN	NaN	NaN	7.6358E-17	1	23809	213.45	190.55	1	608420			5002	1087	4260	4361	5002	5002		
EPELLEPIPYEFMA	14	Oxidation (M)	_EPELLEPIPYEFM(Oxidation (M))A_	EPELLEPIPYEFM(1)A	EPELLEPIPYEFM(45)A	0	1	0	P46778	P46778	P46778	RPL21	60S ribosomal protein L21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.405114	1692.79568	0.95616	0.00081025	0.66714	0.00056534	1.6233	0.0013756	847.907546822433	19.206	0.20393	19.206	19.117	19.321	0	369	94	1.07793901817685	0.0621612828665437	1.07793901817685	435.265690640411	0	25.100375124895						1324	24	5	NaN	NaN	NaN	0.015033	1	24278	44.82	41.316	1	493940			5003	1087	4260	4362	5003	5003	388	
EPELQQYVPQLQNNTILR	18	Unmodified	_EPELQQYVPQLQNNTILR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.386687	2182.13823	0.40672	0.00029625	-0.18084	-0.00013172	0.22588	0.00016453	728.385778279827	15.606	0.11519	15.606	15.553	15.668	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	584.752194816497	0	13.4408491961474						129	14	2	NaN	NaN	NaN	0.015051	1	34482	50.314	41.946	1	28831			5004	1728	4261	4363	5004	5004		
EPELQQYVPQLQNNTILR	18	Unmodified	_EPELQQYVPQLQNNTILR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.07639	2182.13823	0.74288	0.00081128	0.23871	0.00026069	0.98159	0.001072	1092.57767593448	15.642	0.17732	15.642	15.544	15.721	0	129	64	1.23753038177212	0.0416430502217877	1.23753038177212	498.796744921406	0	16.7845720841877						838	21	4	NaN	NaN	NaN	3.6426E-05	1	34483	72.031	66.416	1	183650			5005	1728	4261	4363	5005	5005		
EPESFPFVILGNK	13	Unmodified	_EPESFPFVILGNK_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.890292	1475.76603	0.086814	6.4146E-05	-1.1452	-0.00084617	-1.0584	-0.00078203	739.39075606787	17.043	0.39906	17.043	16.892	17.291	0	483	64	1.00151498427745	0.0423247851454723	1.00151498427745	404.888676386538	0	17.1109034861404						1031	46	3	NaN	NaN	NaN	0.00052853	1	17773	87.895	75.938	1	275750			5006	1181	4262	4364	5006	5006		
EPESILQVLSQMEK	14	Unmodified	_EPESILQVLSQMEK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.921463	1629.82837	0.67798	0.00055318	1.2783	0.001043	1.9563	0.0015962	815.923049620735	19.171	0.2128	19.171	19.064	19.277	0	390	55	1.06389100039157	0.0361409246465043	1.06389100039157	429.727925647853	0	14.5980787257544						560	25	3	NaN	NaN	NaN	1.0993E-11	1	22483	140.57	106.85	1	203770			5007	736	4263	4365	5007	5007		
EPEVLSTMAIIVNK	14	Unmodified	_EPEVLSTMAIIVNK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.284853	1542.83273	-0.7206	-0.00037131	-0.23171	-0.0001194	-0.95231	-0.00049071	515.284792250503	16.12	0.12417	16.12	16.041	16.165	0	705	22	0.851531465363931	0.0142615450408974	0.851531465363931	516.169294498168	0	8.64486157192999						160	15	3	NaN	NaN	NaN	0.023007	1	19832	64.064	61.186	1	29940			5008	135	4264	4366	5008	5008		
EPEVLSTMAIIVNK	14	Unmodified	_EPEVLSTMAIIVNK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.423642	1542.83273	1.7942	0.0013859	-0.26347	-0.00020351	1.5307	0.0011824	772.423931637843	16.12	0.23055	16.12	15.996	16.227	0	294	34	1.12800004657306	0.0219904803552342	1.12800004657306	455.839383224479	0	8.88663704615431						561	27	4	NaN	NaN	NaN	3.5961E-07	1	19833	122.51	115.37	1	159310			5009	135	4264	4366	5009	5009		
EPFELEAFYTNLHEVPYPDAR	21	Unmodified	_EPFELEAFYTNLHEVPYPDAR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	846.404295	2536.19105	0.34506	0.00029206	1.2101	0.0010242	1.5551	0.0013163	846.739378032253	17.291	0.070943	17.291	17.255	17.326	0	432	82	1.035754240522	0.0543499910710907	1.035754240522	625.64916475964	0	32.8302073870192						535	9	4	NaN	NaN	NaN	1.995E-16	1	36978	148.82	145.24	1	101060			5010	450	4265	4367	5010	5010		
EPFFHGHDNYDQLVR	15	Unmodified	_EPFFHGHDNYDQLVR_			0	0	0	P68400	P68400	P68400	CSNK2A1	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.292058	1872.85435	0.25712	0.00016078	-0.057335	-3.5851E-05	0.19979	0.00012493	625.626531782826	9.0706	0.062083	9.0706	9.044	9.106	0	660	46	0.882057989648486	0.0305053430673474	0.882057989648486	533.835640997694	0	18.4623228419503						242	8	3	NaN	NaN	NaN	0.001814	1	28996	47.57	45.86	1	51411			5011	1450	4266	4368	5011	5011		
EPFFHGQDNYDQLVR	15	Unmodified	_EPFFHGQDNYDQLVR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.291947	1863.85401	0.54984	0.00034216	-0.34659	-0.00021568	0.20325	0.00012648	622.291469979037	10.897	0.079797	10.897	10.871	10.95	0	687	49	0.863749705078866	0.0325548466595607	0.863749705078866	522.773715459382	0	19.7034141306884						321	10	3	NaN	NaN	NaN	0.0014421	1	28778	54.27	50.024	1	80913			5012	772	4267	4369	5012	5012		
EPFGTEGR	8	Unmodified	_EPFGTEGR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.711599	891.408646	0.25821	0.00011535	3.6174	0.0016159	3.8756	0.0017313	446.713027931207	3.6431	0.20391	3.6431	3.5633	3.7672	0	765	43	0.810730346695089	0.0286044998957902	0.810730346695089	329.747032763133	0	11.6342616293572						421	24	2	NaN	NaN	NaN	0.018831	1	2179	49.325	33.827	1	285290			5013	653	4268	4370	5013	5013		
EPFHSILSVLK	11	Unmodified	_EPFHSILSVLK_			0	0	0	Q8NCW5	Q8NCW5	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.363713	1268.71287	1.2866	0.00081747	-0.69322	-0.00044045	0.59339	0.00037702	635.364152348962	14.329	0.28374	14.329	14.178	14.462	0	531	67	0.969216233931596	0.0444476643821431	0.969216233931596	392.424489410759	0	17.9963473474943						712	33	3	NaN	NaN	NaN	0.0028076	1	11481	76.85	34.775	1	196150			5014	2302	4269	4371	5014	5014		
EPFLQQLK	8	Unmodified	_EPFLQQLK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.784567	1001.55458	-0.19975	-0.00010023	-4.029	-0.0020217	-4.2287	-0.0021219	501.783867992301	9.8066	0.2128	9.8066	9.709	9.9218	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	337.48586020687	0	8.28362934286946						164	25	2	NaN	NaN	NaN	0.0097008	1	4336	49.058	27.13	1	48132			5015	3329	4270	4372	5015	5015		
EPFPTIYVDSQK	12	Unmodified	_EPFPTIYVDSQK_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.358825	1422.7031	1.5587	0.0011104	0.72278	0.00051488	2.2815	0.0016253	712.35915056511	11.775	0.23057	11.775	11.695	11.926	0	441	70	1.02971785871157	0.0462853457660803	1.02971785871157	416.434616317548	0	18.7185451258856						1096	27	4	NaN	NaN	NaN	0.0060769	1	16171	64.906	44.723	1	508360			5016	229	4271	4373	5016	5016		
EPGEYAVHIMCDDEDIK	17	Unmodified	_EPGEYAVHIMCDDEDIK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.292407	2019.85539	0.99288	0.00066949	-0.18646	-0.00012573	0.80642	0.00054377	674.626819921856	10.445	0.1419	10.445	10.383	10.525	0	633	61	0.900343422309015	0.0406089550100428	0.900343422309015	544.610885135868	0	24.5640478782456						739	17	6	NaN	NaN	NaN	3.6796E-07	1	31975	108.91	103.21	1	279590			5017	326	4272	4374	5017	5017		
EPGLLASCSDDGEVAFWK	18	Unmodified	_EPGLLASCSDDGEVAFWK_			0	0	0	O76071	O76071	O76071	CIAO1	Probable cytosolic iron-sulfur protein assembly protein CIAO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.954023	1979.89349	1.9311	0.0019136	6.6243	0.0065644	8.5554	0.008478	991.462031115395	15.42	0.18633	15.42	15.322	15.508	0	216	109	1.17988115188462	0.0716088122237071	1.17988115188462	475.867899062301	0	28.8811588970739						1080	22	4	NaN	NaN	NaN	0.015402	1	31280	29.98	29.241	1	212590			5018	381	4273	4375	5018	5018		
EPGTVALVSK	10	Unmodified	_EPGTVALVSK_			0	0	0	Q9HAV7	Q9HAV7	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.787307	999.560061	-0.0711	-3.5606E-05	-1.7098	-0.00085623	-1.7809	-0.00089184	500.787399010634	5.7623	0.20394	5.7623	5.6825	5.8864	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	337.494974676846	0	8.28385305858575						321	24	3	NaN	NaN	NaN	0.062689	1	4279	17.731	13.528	1	71745			5019	2948	4274	4376	5019	5019		
EPIEEEPTGAGLNK	14	Unmodified	_EPIEEEPTGAGLNK_			0	0	0	Q6IQ49	Q6IQ49	Q6IQ49	SDE2	Protein SDE2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.367378	1482.7202	2.0837	0.0015469	-4.0079	-0.0029753	-1.9242	-0.0014284	742.364066826562	6.0638	0.1862	6.0638	6.0017	6.1879	0	468	46	1.01159370163332	0.0302111061455164	1.01159370163332	408.945454736206	0	12.2130995090361						239	22	2	NaN	NaN	NaN	0.0076817	1	17991	35.33	25.815	1	57861			5020	2040	4275	4377	5020	5020		
EPIMPAPGQEETVR	14	Unmodified	_EPIMPAPGQEETVR_			0	0	0	Q93052	Q93052	Q93052	LPP	Lipoma-preferred partner	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.385048	1552.75554	2.5597	0.0019899	-3.0086	-0.0023388	-0.44885	-0.00034893	777.383801406785	7.8463	0.28386	7.8463	7.6511	7.935	0	426	73	1.03977710643793	0.0482411232831763	1.03977710643793	420.163482274215	0	19.4937532495953						756	33	3	NaN	NaN	NaN	0.032821	1	20148	36.952	31.085	1	173900			5021	2455	4276	4378	5021	5021		
EPIPSLEAIYLLSPTEK	17	Unmodified	_EPIPSLEAIYLLSPTEK_			0	0	0	Q15833	Q15833	Q15833	STXBP2	Syntaxin-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.519325	1899.0241	1.0557	0.0010035	-1.2653	-0.0012027	-0.20963	-0.00019926	950.518234225995	18.851	0.12414	18.851	18.807	18.931	0	225	46	1.17390432875292	0.029896443173731	1.17390432875292	473.597697080787	0	12.0613633421277						341	15	3	NaN	NaN	NaN	0.003481	1	29586	24.922	23.08	1	76777			5022	1872	4277	4379	5022	5022		
EPIPVLPTVHYNMGGIPTNYK	21	Unmodified	_EPIPVLPTVHYNMGGIPTNYK_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.740073	2339.19839	1.2067	0.00094212	-2.6504	-0.0020693	-1.4437	-0.0011271	781.07266093615	14.489	0.1596	14.489	14.409	14.568	0	561	85	0.948993180460448	0.0566324341857632	0.948993180460448	573.503992498937	0	34.2246159184302						866	19	4	NaN	NaN	NaN	0.069701	1	35959	11.478	9.7455	1	205890			5023	919	4278	4380	5023	5023		
EPIPVLPTVHYNMGGIPTNYK	21	Unmodified	_EPIPVLPTVHYNMGGIPTNYK_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.740073	2339.19839	1.6503	0.0012884	-1.0052	-0.0007848	0.64505	0.00050362	781.073637465214	14.489	0.18621	14.489	14.391	14.577	0	438	76	1.03173026378327	0.0503588231991811	1.03173026378327	623.504395913612	0	30.4332912776915						534	22	2	NaN	NaN	NaN	0.00054085	1	35960	37.774	37.409	1	247630			5024	919	4278	4380	5024	5024		
EPIVGSTDYGK	11	Unmodified	_EPIVGSTDYGK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.290411	1164.56627	1.8416	0.0010742	1.6033	0.00093519	3.4449	0.0020094	583.291180373377	5.6471	0.22173	5.6471	5.5937	5.8155	0	600	28	0.922661313351899	0.0182524998058907	0.922661313351899	373.934439679061	0	7.3973387513808						376	26	3	NaN	NaN	NaN	0.012037	1	8458	47.561	22.307	1	143430			5025	1703	4279	4381	5025	5025		
EPLFGISTGNLITGLAAGAK	20	Unmodified	_EPLFGISTGNLITGLAAGAK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.026319	1929.05713	-0.21562	-0.00013887	-0.046299	-2.9818E-05	-0.26192	-0.00016868	644.360504385379	18.86	0.070915	18.86	18.834	18.905	0	591	25	0.928742107665821	0.01621208273842	0.928742107665821	561.969314128951	0	9.80971245075693						159	9	4	NaN	NaN	NaN	0.029411	1	30276	35.45	32.735	1	48325			5026	922	4280	4382	5026	5026		
EPLFGISTGNLITGLAAGAK	20	Unmodified	_EPLFGISTGNLITGLAAGAK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.53584	1929.05713	1.5712	0.0015171	0.33873	0.00032706	1.91	0.0018441	966.03768748221	18.86	0.17731	18.86	18.816	18.993	0	174	145	1.20774045859593	0.0956228606969867	1.20774045859593	487.193448388486	0	38.5735452647639						1699	21	6	NaN	NaN	NaN	6.8829E-48	1	30278	269	233.67	1	1706200			5027	922	4280	4382	5027	5027		
EPLIELFVK	9	Unmodified	_EPLIELFVK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.323525	1086.6325	-0.74906	-0.00040773	-0.81883	-0.00044571	-1.5679	-0.00085344	544.32306104842	17.176	0.40793	17.176	16.91	17.317	0	669	37	0.875957769340875	0.0244025785468278	0.875957769340875	355.304382887154	0	9.89812912780042						788	47	3	NaN	NaN	NaN	0.0075663	1	6390	56.378	45.018	1	299790			5028	3454	4281	4383	5028	5028		
EPLPPIQQHIWNMLNPPAEVTTK	23	Unmodified	_EPLPPIQQHIWNMLNPPAEVTTK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	885.131741	2652.37339	1.1348	0.0010045	-0.64957	-0.00057495	0.48525	0.00042951	885.465714507349	17.397	0.48768	17.397	17.025	17.513	0	480	64	1.00353128488872	0.0423130912523418	1.00353128488872	606.040114317746	0	25.5531950481744						2315	56	5	NaN	NaN	NaN	6.5517E-07	1	37451	110.48	97.423	1	572450			5029	674	4282	4384	5029	5029		
EPLSLINVR	9	Unmodified	_EPLSLINVR_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.808574	1039.60259	0.33883	0.00017647	-0.76942	-0.00040072	-0.43059	-0.00022425	520.808293728709	11.447	0.10644	11.447	11.403	11.509	0	651	28	0.888155670855968	0.018290507163651	0.888155670855968	360.45604226787	0	7.42316244733064						224	13	3	NaN	NaN	NaN	0.012885	1	5227	36.57	31.261	1	56147			5030	2551	4283	4385	5030	5030		
EPLVDVVDPK	10	Unmodified	_EPLVDVVDPK_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.805697	1109.59684	1.2799	0.0007114	0.27494	0.00015281	1.5549	0.00086421	555.805561628499	10.073	0.24826	10.073	9.9307	10.179	0	582	49	0.934820374997243	0.032415189981154	0.934820374997243	379.081850563792	0	13.1447821775055						723	29	4	NaN	NaN	NaN	0.00498	1	6985	63.397	43.164	1	195130			5031	2681	4284	4386	5031	5031		
EPLYVGVDDDK	11	Unmodified	_EPLYVGVDDDK_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.300975	1248.5874	2.2402	0.0014008	1.4838	0.00092781	3.724	0.0023286	625.302802863353	7.7576	0.25724	7.7576	7.6688	7.9261	0	555	46	0.953040030838688	0.0303408835335462	0.953040030838688	385.941887155833	0	12.2868058738387						851	30	5	NaN	NaN	NaN	0.011041	1	10868	53.028	47.162	1	241760			5032	3072	4285	4387	5032	5032		
EPNLEPMVEK	10	Unmodified	_EPNLEPMVEK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.294639	1184.57472	1.3549	0.00080383	0.11595	6.879E-05	1.4708	0.00087262	593.294585900543	6.4008	0.23054	6.4008	6.2944	6.5249	0	603	49	0.920633820089869	0.0324466467014676	0.920633820089869	373.038972137538	0	13.1473159802491						565	27	3	NaN	NaN	NaN	0.056239	1	8992	41.025	8.4762	1	172050			5033	3422	4286	4388	5033	5033		
EPNLTYEPQLPYVEK	15	Unmodified	_EPNLTYEPQLPYVEK_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.459267	1818.90398	1.6376	0.001491	-0.29747	-0.00027083	1.3402	0.0012202	910.96076481727	13.238	0.23948	13.238	13.159	13.398	0	261	55	1.14997238118939	0.0359176733564297	1.14997238118939	464.090831590123	0	14.495185423086						630	28	3	NaN	NaN	NaN	0.00032711	1	27695	66.619	63.904	1	152840			5034	1568	4287	4389	5034	5034		
EPNSENVDISSGGGVTGWK	19	Unmodified	_EPNSENVDISSGGGVTGWK_			0	0	0	P61026	P61026	P61026	RAB10	Ras-related protein Rab-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.950326	1931.8861	3.0299	0.0029297	-1.038	-0.0010037	1.9919	0.0019261	966.949242621095	9.6824	0.25713	9.6824	9.6026	9.8598	0	267	67	1.14597988355104	0.043953756762201	1.14597988355104	462.274865025036	0	17.7304307573257						1161	30	4	NaN	NaN	NaN	1.5661E-05	1	30351	93.026	88.209	1	366260			5035	1325	4288	4390	5035	5035		
EPPKPEQVESR	11	Unmodified	_EPPKPEQVESR_			0	0	1	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	432.557853	1294.65173	-0.83616	-0.00036169	1.6897	0.0007309	0.85357	0.00036922	432.558587955573	2.6409	0.20397	2.6409	2.5789	2.7828	0	831	19	0.76571780291124	0.0122966759189851	0.76571780291124	464.941309206616	0	7.46650081652228						134	24	3	NaN	NaN	NaN	0.036543	1	12207	41.824	40.025	1	19730			5036	272	4289	4391	5036	5036		
EPPLLLGVLHPNTK	14	Unmodified	_EPPLLLGVLHPNTK_			0	0	0	Q9HDC9	Q9HDC9	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.448308	1526.88206	1.9826	0.0015156	1.5021	0.0011483	3.4847	0.0026639	764.449303103186	13.762	0.21278	13.762	13.646	13.859	0	294	46	1.12800004657306	0.0299911493699134	1.12800004657306	455.88172448711	0	12.1209364624091						639	25	4	NaN	NaN	NaN	1.0659E-08	1	19341	150.44	143.3	1	170670			5037	2973	4290	4392	5037	5037		
EPPLSLTIHLTSPVVR	16	Unmodified	_EPPLSLTIHLTSPVVR_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.009261	1758.00397	2.3752	0.0020902	-0.393	-0.00034584	1.9822	0.0017444	880.510283813535	14.32	0.18618	14.32	14.249	14.435	0	222	43	1.17589687683038	0.0278975958316861	1.17589687683038	474.677479103539	0	11.2614981154885						643	22	4	NaN	NaN	NaN	0.00012873	1	26095	81.48	70.509	1	205160			5038	1606	4291	4393	5038	5038		
EPQLAFHQR	9	Unmodified	_EPQLAFHQR_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.293622	1124.57269	1.6786	0.00094555	1.5378	0.00086624	3.2164	0.0018118	563.294825906024	4.6982	0.20395	4.6982	4.6361	4.8401	0	612	46	0.914549654013882	0.0304208382695857	0.914549654013882	370.801206650494	0	12.3340307310539						322	24	3	NaN	NaN	NaN	0.00016157	1	7391	63.301	53.908	1	90997			5039	191	4292	4394	5039	5039		
EPQPEVAAAEEEK	13	Unmodified	_EPQPEVAAAEEEK_			0	0	0	O15427	O15427	O15427	SLC16A3	Monocarboxylate transporter 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.838453	1425.66235	2.584	0.0018446	-1.69	-0.0012064	0.894	0.00063817	713.837832099878	4.9287	0.22165	4.9287	4.8489	5.0706	0	495	79	0.993446994398923	0.0524347274521711	0.993446994398923	401.758070016303	0	21.2050315938205						642	26	4	NaN	NaN	NaN	0.026435	1	16246	34.779	31.677	1	231180			5040	175	4293	4395	5040	5040		
EPSEEPLPMETEEEDPKEEPIK	22	Unmodified	_EPSEEPLPMETEEEDPKEEPIK_			0	0	1	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	861.394913	2581.16291	1.8343	0.0015801	0.74334	0.00064031	2.5777	0.0022204	861.729664154761	9.31	0.15079	9.31	9.2656	9.4164	0	426	43	1.03977710643793	0.0281639553291928	1.03977710643793	628.01954749168	0	17.0108712452898						512	18	4	NaN	NaN	NaN	0.00023432	1	37166	71.912	65.231	1	100780			5041	119	4294	4396	5041	5041		
EPSEVPTPK	9	Unmodified	_EPSEVPTPK_			0	0	0	P17096	P17096	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.25584	982.497126	1.8941	0.0009324	0.20941	0.00010308	2.1035	0.0010355	492.256141511191	3.9268	0.62955	3.9268	3.6431	4.2726	-4.4409E-16	711	70	0.847456455381371	0.046852880285563	0.847456455381371	344.199490687046	0	19.0295765984278						912	72	2	NaN	NaN	NaN	0.0029762	1	3892	74.486	48.263	1	461920			5042	735	4295	4397	5042	5042		
EPSQDTVATEPSEVEGSAANK	21	Unmodified	_EPSQDTVATEPSEVEGSAANK_			0	0	0	Q96RU2	Q96RU2	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.49275	2144.97095	2.4561	0.0026366	-0.95664	-0.001027	1.4995	0.0016097	1073.49357501518	6.1525	0.062055	6.1525	6.1347	6.1968	0	192	13	1.1958073123591	0.00795870749400129	1.1958073123591	482.032751017886	0	3.20817378203827						40	8	2	NaN	NaN	NaN	6.4493E-06	1	33949	77.325	71.12	1	6818.4			5043	2615	4296	4398	5043	5043		
EPSVPASCAVSATYER	16	Unmodified	_EPSVPASCAVSATYER_			0	0	0	Q92615	Q92615	Q92615	LARP4B	La-related protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.401426	1722.7883	3.7891	0.0032677	4.2488	0.0036642	8.0379	0.0069319	862.405272487909	7.7221	0.15973	7.7221	7.6865	7.8463	0	312	55	1.11600111266355	0.036036482449755	1.11600111266355	450.571224046403	0	14.5492704473745						453	19	3	NaN	NaN	NaN	0.019004	1	25121	28.277	3.5336	1	84367			5044	2419	4297	4399	5044	5044		
EPSVQEATSTSDILK	15	Unmodified	_EPSVQEATSTSDILK_			0	0	0	Q8IYB3	Q8IYB3	Q8IYB3	SRRM1	Serine/arginine repetitive matrix protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.904325	1603.7941	1.9711	0.0015826	3.2577	0.0026156	5.2288	0.0041982	802.907761923198	9.4253	0.29258	9.4253	9.3455	9.6381	0	363	76	1.08195024817156	0.0501715264263143	1.08195024817156	437.082212571009	0	20.268105502575						1347	34	5	NaN	NaN	NaN	2.5468E-06	1	21708	130.71	103.12	1	526290			5045	2221	4298	4400	5045	5045		
EPTPSIASDISLPIATQELR	20	Unmodified	_EPTPSIASDISLPIATQELR_			0	0	0	A0FGR8	A0FGR8	A0FGR8	ESYT2	Extended synaptotagmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.57061	2137.12666	-0.34133	-0.00036507	-1.0675	-0.0011418	-1.4089	-0.0015069	1070.07151310121	16.812	0.13303	16.812	16.741	16.874	0	78	52	1.27121832677567	0.0336648790811453	1.27121832677567	512.443210357511	0	13.5707127165134						474	16	4	NaN	NaN	NaN	0.0022368	1	33840	51.07	41.556	1	91508			5046	4	4299	4401	5046	5046		
EPTQAVVEEQVLDK	14	Unmodified	_EPTQAVVEEQVLDK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.90941	1583.80427	1.7178	0.001362	-2.4217	-0.0019202	-0.70392	-0.00055814	792.908455704454	9.5228	0.2128	9.5228	9.4164	9.6292	0	405	61	1.05384839605172	0.0401621251904793	1.05384839605172	425.775756509871	0	16.2262990578972						530	25	4	NaN	NaN	NaN	0.00023901	1	21087	92.747	71.659	1	159910			5047	206	4300	4402	5047	5047		
EPTSSEQGGLEGSGSAAGEGK	21	Unmodified	_EPTSSEQGGLEGSGSAAGEGK_			0	0	0	Q04323	Q04323	Q04323	UBXN1	UBX domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.93233	1933.85011	4.5223	0.0043773	-4.1781	-0.0040442	0.3442	0.00033317	967.928351521	3.7317	0.19507	3.7317	3.6874	3.8824	0	348	55	1.09197348738011	0.0360712461548371	1.09197348738011	440.486136595958	0	14.5506132196186						686	23	4	NaN	NaN	NaN	9.6576E-06	1	30395	86.952	81.564	1	177910			5048	1542	4301	4403	5048	5048		
EPVETAVDNNSK	12	Unmodified	_EPVETAVDNNSK_			0	0	0	Q6FI81	Q6FI81	Q6FI81	CIAPIN1	Anamorsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.812239	1301.60992	2.3672	0.001543	-1.7367	-0.001132	0.63045	0.00041093	651.811559646904	3.4923	0.1952	3.4923	3.439	3.6342	0	561	58	0.948993180460448	0.0384424338892226	0.948993180460448	384.131825690861	0	15.5606622027594						676	23	3	NaN	NaN	NaN	0.0073497	1	12390	36.514	23.918	1	142530			5049	2031	4302	4404	5049	5049		
EPVICTPVSSGFEK	14	Unmodified	_EPVICTPVSSGFEK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.381974	1548.74939	2.357	0.0018276	-1.8175	-0.0014093	0.53953	0.00041834	775.381847124585	10.489	0.19511	10.489	10.392	10.587	0	405	64	1.05384839605172	0.042219714327189	1.05384839605172	425.859279808249	0	17.060952224673						807	23	4	NaN	NaN	NaN	0.0010484	1	19999	71.896	58.722	1	309520			5050	2355	4303	4405	5050	5050		
EPVQLETLSIR	11	Unmodified	_EPVQLETLSIR_			0	0	0	P62314	P62314	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.861534	1283.70852	0.87509	0.00056256	-5.2767	-0.0033922	-4.4016	-0.0028296	642.858244120949	11.784	0.15963	11.784	11.704	11.864	0	540	46	0.963152256458504	0.0303157001501234	0.963152256458504	389.920218190632	0	12.2729343547431						487	19	3	NaN	NaN	NaN	2.1536E-05	1	11881	83.438	0	1	198120			5051	1385	4304	4406	5051	5051		
EPVQTLYSQSPALELDK	17	Unmodified	_EPVQTLYSQSPALELDK_			0	0	0	Q9UHY1	Q9UHY1	Q9UHY1	NRBP1	Nuclear receptor-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.493838	1916.97312	1.6928	0.0016243	-1.3727	-0.0013171	0.32017	0.0003072	959.492548149207	12.653	0.11527	12.653	12.591	12.706	0	228	46	1.17191150690002	0.0299046606743485	1.17191150690002	472.761606704172	0	12.0638592121565						270	14	4	NaN	NaN	NaN	0.0010153	1	29995	54.556	51.471	1	74387			5052	3226	4305	4407	5052	5052		
EPWLLPSQHNDIIR	14	Unmodified	_EPWLLPSQHNDIIR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.305528	1716.89475	0.059019	3.3836E-05	-3.3886	-0.0019427	-3.3296	-0.0019089	573.303742137836	12.529	0.44336	12.529	12.325	12.768	0	678	91	0.869855008346864	0.0610403848401515	0.869855008346864	526.801299294564	0	36.9672574563247						1458	51	4	NaN	NaN	NaN	0.063063	1	24974	40.861	28.69	1	464600			5053	1771	4306	4408	5053	5053		
EPWLLPSQHNDIIR	14	Unmodified	_EPWLLPSQHNDIIR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.454653	1716.89475	2.3184	0.0019926	0.03106	2.6694E-05	2.3494	0.0020192	859.455154062384	12.431	0.19505	12.431	12.352	12.547	0	288	61	1.13199748998575	0.0399799538410281	1.13199748998575	457.04209454208	0	16.141839540147						452	23	2	NaN	NaN	NaN	0.0036445	1	24975	65.879	42.923	1	178980			5054	1771	4306	4408	5054	5054		
EQADYCVSHMK	11	Unmodified	_EQADYCVSHMK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.5288	1366.56457	-1.0103	-0.00046124	2.085	0.00095188	1.0747	0.00049064	456.529783082953	3.6519	0.12412	3.6519	3.6164	3.7406	0	798	22	0.788241307691771	0.0143231624709025	0.788241307691771	478.351909471766	0	8.69215055183292						172	15	3	NaN	NaN	NaN	0.035855	1	14381	34.953	29.087	1	38591			5055	1703	4307	4409	5055	5055		
EQADYCVSHMK	11	Unmodified	_EQADYCVSHMK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.289562	1366.56457	2.1342	0.0014604	-1.0248	-0.00070129	1.1093	0.00075909	684.288857942152	3.6608	0.11526	3.6608	3.6342	3.7494	0	501	28	0.98941132619024	0.0181642753536437	0.98941132619024	400.292227189988	0	7.34883262818454						186	14	3	NaN	NaN	NaN	0.0050055	1	14382	44.57	33.868	1	44152			5056	1703	4307	4409	5056	5056		
EQAELEAAR	9	Unmodified	_EQAELEAAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.753995	1015.49344	0.70024	0.00035625	1.4564	0.00074096	2.1567	0.0010972	508.754943426321	3.2794	0.33705	3.2794	3.1641	3.5012	0	738	76	0.829104889055312	0.0509836920700807	0.829104889055312	336.59478951789	0	20.6980387255066						731	39	3	NaN	NaN	NaN	0.048758	1	4637	29.31	21.663	1	192390			5057	1816	4308	4410	5057	5057		
EQAGEAEGAQAVTQLMVDR	19	Unmodified	_EQAGEAEGAQAVTQLMVDR_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.97856	2001.94257	2.7208	0.0027261	1.0072	0.0010092	3.728	0.0037354	1001.97944731134	12.884	0.21283	12.884	12.786	12.999	0	201	43	1.18983705239708	0.0278669582266173	1.18983705239708	479.846519886279	0	11.238398483153						360	25	4	NaN	NaN	NaN	1.3171E-10	1	31666	95.263	93.531	1	66136			5058	108	4309	4411	5058	5058		
EQAIGEYEDLRAENQK	16	Unmodified	_EQAIGEYEDLRAENQK_			0	0	1	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.952869	1891.89118	2.1503	0.0020362	-1.1308	-0.0010708	1.0195	0.00096545	947.453117759939	6.7644	0.035486	6.7644	6.7466	6.7821	0	228	25	1.17191150690002	0.0159436712794023	1.17191150690002	472.806645465935	0	6.4324598654776						77	5	3	NaN	NaN	NaN	0.0024991	1	29413	67.887	50.472	1	10930			5059	5	4310	4412	5059	5059		
EQALSTLQLEHTSTQALVSELLPAK	25	Unmodified	_EQALSTLQLEHTSTQALVSELLPAK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	903.155268	2706.44398	0.89599	0.00080921	-1.6248	-0.0014675	-0.72884	-0.00065825	903.48817193589	17.672	0.16846	17.672	17.566	17.734	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	613.278647067713	0	13.3799103125135						507	20	4	NaN	NaN	NaN	1.0755E-06	1	37624	66.553	63.785	1	129510			5060	1782	4311	4413	5060	5060		
EQANAVSEAVVSSVNTVATK	20	Unmodified	_EQANAVSEAVVSSVNTVATK_			0	0	0	O76070	O76070	O76070	SNCG	Gamma-synuclein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.51583	2003.01711	1.3756	0.001379	-3.4252	-0.0034338	-2.0496	-0.0020548	1003.01412762965	13.017	0.10639	13.017	12.981	13.088	0	201	34	1.18983705239708	0.0218939620347083	1.18983705239708	479.844761883024	0	8.82953088244773						262	13	4	NaN	NaN	NaN	8.656E-16	1	31688	168.74	158.41	1	59474			5061	380	4312	4414	5061	5061		
EQDDLLVLLADQDQK	15	Unmodified	_EQDDLLVLLADQDQK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.631746	1741.87341	-1.4569	-0.00084736	1.0817	0.00062915	-0.37518	-0.00021822	581.966561300321	16.723	0.097576	16.723	16.688	16.785	0	648	25	0.890187667287968	0.0162548450794181	0.890187667287968	539.053291257948	0	9.84312416464184						175	12	3	NaN	NaN	NaN	0.002695	1	25654	72.846	64.472	1	38644			5062	280	4313	4415	5062	5062		
EQDLQLEELR	10	Unmodified	_EQDLQLEELR_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.825149	1271.63574	1.3591	0.00086553	-3.0824	-0.001963	-1.7233	-0.0010975	636.824563594726	9.6115	0.23942	9.6115	9.5494	9.7889	0	549	55	0.957085760909907	0.0364166254573408	0.957085760909907	387.503419547683	0	14.7443076362256						556	28	4	NaN	NaN	NaN	5.4564E-05	1	11538	95.311	70.057	1	156220			5063	280	4314	4416	5063	5063		
EQEAAMEIQEPAANK	15	Unmodified	_EQEAAMEIQEPAANK_			0	0	0	Q92576	Q92576	Q92576	PHF3	PHD finger protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.888152	1657.76175	2.4136	0.002003	-2.5871	-0.002147	-0.17351	-0.00014399	829.885812887995	6.5072	0.079801	6.5072	6.4629	6.5427	0	399	25	1.0578662689527	0.0160714927508061	1.0578662689527	427.23373660838	0	6.4906917843208						104	10	2	NaN	NaN	NaN	2.0443E-06	1	23256	117.21	92.389	1	19548			5064	2413	4315	4417	5064	5064		
EQEAGLLQFLR	11	Unmodified	_EQEAGLLQFLR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.353877	1302.6932	0.34875	0.00022751	-0.19583	-0.00012775	0.15292	9.9757E-05	652.353812050136	16.289	0.17732	16.289	16.218	16.395	0	534	46	0.967195187796614	0.0303157001501234	0.967195187796614	391.496177459084	0	12.2710295455532						499	21	4	NaN	NaN	NaN	0.00031741	1	12436	88.181	70.711	1	172880			5065	3134	4316	4418	5065	5065		
EQEFPVEPVGEK	12	Unmodified	_EQEFPVEPVGEK_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.340632	1386.66671	1.1256	0.00078154	0.20551	0.00014269	1.3311	0.00092423	694.340786720781	8.485	0.21281	8.485	8.3963	8.6091	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	396.967753001777	0	8.16813655748973						281	25	3	NaN	NaN	NaN	0.0025869	1	15038	60	42.269	1	57921			5066	301	4317	4419	5066	5066		
EQEHMINWVEK	11	Unmodified	_EQEHMINWVEK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.56261	1441.666	-0.58649	-0.00028243	-1.5457	-0.00074434	-2.1322	-0.0010268	481.562099513317	7.7398	0.1508	7.7398	7.7044	7.8552	0	786	28	0.796423123669906	0.0184052442534667	0.796423123669906	483.065273590309	0	11.1635813759752						280	18	4	NaN	NaN	NaN	0.00022928	1	16710	64.266	59.738	1	83704			5067	830	4318	4420	5067	5067		
EQEHMINWVEK	11	Unmodified	_EQEHMINWVEK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.840276	1441.666	2.7396	0.0019776	-1.281	-0.00092467	1.4587	0.0010529	721.839482607368	7.7487	0.13305	7.7487	7.7044	7.8374	-1.7764E-15	474	43	1.00756305028564	0.0282223642455827	1.00756305028564	407.423252504036	0	11.41213686928						289	16	3	NaN	NaN	NaN	1.9302E-11	1	16711	174.23	158.35	1	170890			5068	830	4318	4420	5068	5068		
EQEITAVQAR	10	Unmodified	_EQEITAVQAR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.801477	1143.5884	1.6684	0.00095568	-3.2924	-0.0018859	-1.624	-0.00093021	572.79949447654	4.3701	0.19507	4.3701	4.3081	4.5031	0	633	49	0.900343422309015	0.0324691438304571	0.900343422309015	364.967843298457	0	13.1618592460624						274	23	3	NaN	NaN	NaN	6.1062E-05	1	7890	114.64	81.243	1	105820			5069	3158	4319	4421	5069	5069		
EQELQQTLQQEQSVLDQLR	19	Unmodified	_EQELQQTLQQEQSVLDQLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1157.08769	2312.16082	-0.13636	-0.00015778	0.73456	0.00084995	0.5982	0.00069217	1157.58988531382	16.351	0.1064	16.351	16.307	16.413	0	87	79	1.26527909472281	0.0514839597455792	1.26527909472281	509.799632967442	0	20.7436476991321						666	13	4	NaN	NaN	NaN	2.0604E-16	1	35738	142.32	133.16	1	189960			5070	1816	4320	4422	5070	5070		
EQEMQECTTQIQYLK	15	Unmodified	_EQEMQECTTQIQYLK_			0	0	0	Q15007	Q15007	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.940058	1927.86556	1.6693	0.0016107	-0.36442	-0.00035165	1.3049	0.0012591	965.441889584086	9.2745	0.079843	9.2745	9.2479	9.3278	0	231	40	1.16991841121525	0.0259173708713474	1.16991841121525	471.938403644672	0	10.4549193503034						220	10	4	NaN	NaN	NaN	1.0443E-11	1	30230	79.795	78.085	1	39045			5071	1789	4321	4423	5071	5071		
EQEPMPTVDSHEPR	14	Unmodified	_EQEPMPTVDSHEPR_			0	0	0	Q9H910	Q9H910	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.372669	1650.73078	3.0679	0.0025352	-2.699	-0.0022304	0.36892	0.00030486	826.370727782698	4.9553	0.16845	4.9553	4.9021	5.0706	0	381	34	1.06991323971056	0.0220815471089169	1.06991323971056	432.114325326003	0	8.91824914112209						301	20	3	NaN	NaN	NaN	9.0029E-06	1	23065	103.76	78.939	1	55503			5072	2929	4322	4424	5072	5072		
EQFLDGDGWTSR	12	Unmodified	_EQFLDGDGWTSR_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.817855	1409.62116	1.6175	0.0011416	1.2733	0.00089873	2.8908	0.0020404	705.818511239968	10.667	0.30146	10.667	10.613	10.915	0	492	58	0.995464410099171	0.0383521190755848	0.995464410099171	402.617933068246	0	15.5116051908485						539	35	4	NaN	NaN	NaN	0.0004666	1	15736	83.775	72.419	1	223110			5073	868	4323	4425	5073	5073		
EQFLDGDGWTSR	12	Unmodified	_EQFLDGDGWTSR_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.817855	1409.62116	2.4815	0.0017515	0.92952	0.00065607	3.411	0.0024076	705.818706206549	10.95	0.39015	10.95	10.879	11.27	0	477	79	1.0055473068722	0.0524274808649311	1.0055473068722	406.695985855574	0	21.2044185992706						1851	45	5	NaN	NaN	NaN	3.6814E-11	1	15739	183.57	141.77	1	3133700			5074	868	4323	4425	5074	5074		
EQFNEFR	7	Unmodified	_EQFNEFR_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.224874	968.435195	0.68246	0.00033115	0.27141	0.00013169	0.95387	0.00046284	485.225037664958	6.0904	0.27494	6.0904	6.0283	6.3033	0	723	52	0.839303037468863	0.0346640784311575	0.839303037468863	340.956254586997	0	14.0818438906649						754	32	4	NaN	NaN	NaN	0.0017709	1	3588	96.51	77.555	1	355140			5075	1831	4324	4426	5075	5075		
EQFVEFR	7	Unmodified	_EQFVEFR_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.737617	953.460681	0.085885	4.1031E-05	0.56284	0.00026889	0.64873	0.00030992	477.737817580914	8.4761	0.15075	8.4761	8.4229	8.5736	0	699	34	0.85560534332665	0.0224047758340703	0.85560534332665	347.655267582942	0	9.10365789377244						330	18	3	NaN	NaN	NaN	0.00024361	1	3307	84.699	62.771	1	112790			5076	241	4325	4427	5076	5076		
EQFWPAVCEHFGVEATGEESSIR	23	Unmodified	_EQFWPAVCEHFGVEATGEESSIR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.071098	2664.19147	1.5126	0.0013448	-0.40433	-0.00035948	1.1083	0.00098534	889.40524184168	14.524	0.12413	14.524	14.462	14.586	0	489	34	0.997481546940468	0.0221885084340552	0.997481546940468	602.372698996537	0	13.3994977181537						337	15	4	NaN	NaN	NaN	0.023965	1	37485	7.868	7.3126	1	59775			5077	728	4326	4428	5077	5077		
EQGFGGVTDAIGADHR	16	Unmodified	_EQGFGGVTDAIGADHR_			0	0	0	Q02127	Q02127	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.925375	1628.7543	-0.022203	-1.2077E-05	1.6159	0.00087891	1.5937	0.00086684	544.261240916813	8.5027	0.062086	8.5027	8.4672	8.5293	0	687	22	0.863749705078866	0.0142476864600277	0.863749705078866	523.330157041181	0	8.63241277971736						119	8	3	NaN	NaN	NaN	0.027125	1	22430	36.181	31.935	1	27308			5078	1525	4327	4429	5078	5078		
EQGPYETYEGSPVSK	15	Unmodified	_EQGPYETYEGSPVSK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.880849	1669.74715	2.8184	0.0023559	-1.5145	-0.001266	1.3039	0.0010899	835.879623930264	6.4983	0.266	6.4983	6.4008	6.6668	0	405	55	1.05384839605172	0.0361459094054593	1.05384839605172	425.585736591989	0	14.5971503460491						1088	31	5	NaN	NaN	NaN	1.1074E-06	1	23610	103.23	86.943	1	346810			5079	828	4328	4430	5079	5079		
EQGVEEHETLLLR	13	Unmodified	_EQGVEEHETLLLR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.901919	1551.78929	2.2783	0.00177	-2.6893	-0.0020893	-0.41104	-0.00031934	776.900926780199	7.8197	0.15078	7.8197	7.7664	7.9172	0	384	31	1.06790610341098	0.0200727492241548	1.06790610341098	431.532500896964	0	8.11124090864342						309	18	4	NaN	NaN	NaN	0.039775	1	20119	32.051	26.663	1	68449			5080	3406	4329	4431	5080	5080		
EQGVLSFWR	9	Unmodified	_EQGVLSFWR_			0	0	0	P05141;P12236	P05141;P12236	P12236	SLC25A5;SLC25A6	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.290548	1120.56654	0.89952	0.00050489	-1.6415	-0.00092136	-0.74198	-0.00041647	561.289615480997	14.311	0.35467	14.311	14.214	14.568	0	651	64	0.888155670855968	0.0426660280169164	0.888155670855968	360.115454555072	0	17.2995529697665						1537	41	5	NaN	NaN	NaN	8.5287E-10	1	7280	180.34	94.53	1	1913500			5081	665;525	4330	4432	5081	5081		
EQGVTFPSGDIQEQLIR	17	Unmodified	_EQGVTFPSGDIQEQLIR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.989254	1915.96396	2.1252	0.002038	0.10863	0.00010417	2.2338	0.0021422	959.49090187008	14.081	0.27489	14.081	14.001	14.276	0	249	70	1.15795408347545	0.0458664348595845	1.15795408347545	467.132796367344	0	18.5030790781029						1692	32	4	NaN	NaN	NaN	0.00018334	1	29976	77.431	71.733	1	947940			5082	1127	4331	4433	5082	5082		
EQGYDVIAYLANIGQK	16	Unmodified	_EQGYDVIAYLANIGQK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.640465	1780.89956	0.1039	6.1785E-05	-0.62689	-0.00037277	-0.52298	-0.00031099	594.639956705301	18.355	0.18622	18.355	18.302	18.488	0	642	49	0.894250814548268	0.0325096976674552	0.894250814548268	541.420137866239	0	19.6828503891212						354	22	2	NaN	NaN	NaN	0.00062321	1	26705	84.309	69.334	1	406150			5083	488	4332	4434	5083	5083		
EQGYDVIAYLANIGQK	16	Unmodified	_EQGYDVIAYLANIGQK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.457059	1780.89956	2.2714	0.0020248	0.2931	0.00026129	2.5645	0.0022861	891.457640338955	18.355	0.25718	18.355	18.266	18.523	0	285	220	1.13399579921816	0.145416964532179	1.13399579921816	457.71710349774	0	58.6949544707246						1750	30	6	NaN	NaN	NaN	9.743E-25	1	26707	240.94	214.47	1	1300200			5084	488	4332	4434	5084	5084		
EQHLFLPFSYK	11	Unmodified	_EQHLFLPFSYK_			0	0	0	P04114	P04114	P04114	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.86662	1407.71869	2.0074	0.0014149	-0.8271	-0.000583	1.1803	0.00083194	704.866240518295	10.897	0.19509	10.897	10.844	11.039	0	459	37	1.01763759082241	0.0241672134976301	1.01763759082241	411.591340856996	0	9.77461514587731						377	23	3	NaN	NaN	NaN	0.066675	1	15702	29.31	16.714	1	163450			5085	507	4333	4435	5085	5085		
EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLK	32	Unmodified	_EQHQHSDLDSNQTHSSGTVTSSSSTANIDDLK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	857.387362	3425.52034	1.882	0.0016136	-1.0428	-0.00089404	0.83923	0.00071955	857.637940215124	5.4697	0.044315	5.4697	5.4519	5.4962	0	387	19	1.06589869032374	0.0120436486184876	1.06589869032374	857.260488235529	0	9.68623396252235						104	6	5	NaN	NaN	NaN	0.029434	1	38618	18.31	17.352	1	16295			5086	1713	4334	4436	5086	5086		
EQIDNLATELCR	12	Unmodified	_EQIDNLATELCR_			0	0	0	O95295	O95295	O95295	SNAPIN	SNARE-associated protein Snapin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.353748	1460.69294	1.1876	0.00086857	0.32622	0.00023858	1.5138	0.0011071	731.356398777714	11.146	0.11528	11.146	11.119	11.234	0	462	34	1.01562323939346	0.022167054085688	1.01562323939346	410.63165804456	0	8.96247133790047						262	14	5	NaN	NaN	NaN	0.0029062	1	17285	44.598	38.334	1	61428			5087	416	4335	4437	5087	5087		
EQIEWLIEHK	10	Unmodified	_EQIEWLIEHK_			0	0	0	Q93034	Q93034	Q93034	CUL5	Cullin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.23471	1323.6823	-2.2471	-0.00099374	-1.1253	-0.00049767	-3.3724	-0.0014914	442.234701981706	10.977	0.053191	10.977	10.959	11.012	0	846	13	0.755468431110051	0.008202354552858	0.755468431110051	458.611873137302	0	4.97929103416698						49	7	2	NaN	NaN	NaN	0.059866	1	13096	13.274	5.6272	1	7468.8			5088	2453	4336	4438	5088	5088		
EQILEEFSK	9	Unmodified	_EQILEEFSK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.787504	1121.56045	1.0758	0.00060436	2.1769	0.0012229	3.2526	0.0018273	561.789155827925	10.339	0.31922	10.339	10.259	10.578	0	633	76	0.900343422309015	0.0507295429023229	0.900343422309015	365.053205041213	0	20.5687982695259						1059	37	3	NaN	NaN	NaN	0.0016771	1	7306	65.404	17.247	1	621490			5089	263	4337	4439	5089	5089		
EQISDIDDAVR	11	Unmodified	_EQISDIDDAVR_			0	0	0	P53999	P53999	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.806956	1259.59936	2.0506	0.0012935	1.9423	0.0012252	3.9929	0.0025188	630.808027054463	7.8995	0.42577	7.8995	7.7576	8.1833	0	552	97	0.955063035883597	0.0647496851703352	0.955063035883597	386.724136228469	0	26.2184433149971						1573	49	4	NaN	NaN	NaN	3.1706E-06	1	11193	139.02	78.311	1	1882700			5090	1248	4338	4440	5090	5090		
EQITQHIADLSSK	13	Unmodified	_EQITQHIADLSSK_			0	0	0	P49916	P49916	P49916	LIG3	DNA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.383362	1468.75217	1.8027	0.0013257	-1.9199	-0.0014119	-0.11719	-8.6182E-05	735.382663560203	7.4205	0.14185	7.4205	7.3585	7.5003	0	441	28	1.02971785871157	0.0181116473716121	1.02971785871157	416.308896340519	0	7.3224329017844						193	16	3	NaN	NaN	NaN	0.045488	1	17547	42.061	23.554	1	61043			5091	1156	4339	4441	5091	5091		
EQIVPKPEEEVAQK	14	Unmodified	_EQIVPKPEEEVAQK_			0	0	1	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.433052	1622.85155	3.1476	0.0025572	-2.2867	-0.0018578	0.86086	0.00069939	812.431447806671	5.5671	0.17736	5.5671	5.4785	5.6559	0	294	28	1.12800004657306	0.0179922103479333	1.12800004657306	455.639438297195	0	7.26769528207319						309	21	3	NaN	NaN	NaN	0.0027632	1	22280	64.266	49.81	1	73049			5092	756	4340	4442	5092	5092		
EQIVPKPEEEVAQK	14	Unmodified	_EQIVPKPEEEVAQK_			0	0	1	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.433052	1622.85155	3.304	0.0026843	-1.6922	-0.0013748	1.6118	0.0013095	812.431690735253	5.5583	0.40784	5.5583	5.4254	5.8332	0	390	112	1.06389100039157	0.0743974645242274	1.06389100039157	429.743506534581	0	30.0517884540392						1687	47	5	NaN	NaN	NaN	5.4272E-05	1	22281	117.41	102.95	1	1180300			5093	756	4340	4442	5093	5093		
EQIVPKPEEEVAQK	14	Unmodified	_EQIVPKPEEEVAQK_			0	0	1	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.957794	1622.85155	1.5422	0.00083583	1.0112	0.00054805	2.5535	0.0013839	541.959008669051	5.5583	0.39011	5.5583	5.4254	5.8155	0	657	67	0.884090832094921	0.0447132521967323	0.884090832094921	535.670887525792	0	27.091772269183						1067	45	5	NaN	NaN	NaN	1.5298E-05	1	22282	136.94	132.11	1	966250			5094	756	4340	4442	5094	5094		
EQIVVDLSHPGVSEDDQVSR	20	Unmodified	_EQIVVDLSHPGVSEDDQVSR_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.029228	2208.06585	0.58205	0.00042898	0.81482	0.00060055	1.3969	0.0010295	737.364331194727	10.259	0.13301	10.259	10.223	10.356	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	556.56055479936	0	14.7094465464562						461	16	5	NaN	NaN	NaN	5.9163E-06	1	34763	101.52	93.155	1	183220			5095	275	4341	4443	5095	5095		
EQIYDVYR	8	Unmodified	_EQIYDVYR_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.266739	1084.51892	1.884	0.0010235	1.173	0.00063726	3.057	0.0016608	543.266842869758	7.6688	0.15082	7.6688	7.6156	7.7664	0	621	46	0.908462957275599	0.0304461528019007	0.908462957275599	368.498059352463	0	12.3498136411581						442	18	4	NaN	NaN	NaN	0.0016165	1	6318	90.308	22.406	1	234360			5096	1008	4342	4444	5096	5096		
EQLAIAEFAR	10	Unmodified	_EQLAIAEFAR_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.308938	1146.60332	0.42881	0.00024627	3.7687	0.0021644	4.1975	0.0024107	574.311380649896	11.802	0.24832	11.802	11.713	11.961	0	585	64	0.932794566565362	0.0425655822640078	0.932794566565362	378.11052893404	0	17.2540615062659						511	26	3	NaN	NaN	NaN	0.0033936	1	7975	58.916	29.814	1	233720			5097	747	4343	4445	5097	5097		
EQLAQAMFDHIPVGVGSK	18	Unmodified	_EQLAQAMFDHIPVGVGSK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.996254	1925.96693	0.17419	0.000112	-2.2246	-0.0014304	-2.0504	-0.0013184	643.329314493339	14.533	0.14188	14.533	14.471	14.613	0	708	82	0.849494101904619	0.0549630386936443	0.849494101904619	514.023307712827	0	33.2577741127475						1024	17	5	NaN	NaN	NaN	8.0139E-05	1	30188	87.727	74.553	1	368970			5098	3395	4344	4446	5098	5098		
EQLDNQLDAYMSK	13	Unmodified	_EQLDNQLDAYMSK_			0	0	0	Q9Y3Y2	Q9Y3Y2	Q9Y3Y2	CHTOP	Chromatin target of PRMT1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.858863	1553.70317	2.2922	0.001783	1.2991	0.0010106	3.5914	0.0027936	777.859824118514	10.826	0.21277	10.826	10.773	10.986	0	414	76	1.04781950764076	0.0502061320950493	1.04781950764076	423.411037281499	0	20.2876834352134						709	25	5	NaN	NaN	NaN	1.9273E-05	1	20166	124.06	119.53	1	169690			5099	3401	4345	4447	5099	5099		
EQLDSSNSTIAILQTEK	17	Unmodified	_EQLDSSNSTIAILQTEK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.978552	1875.94255	2.087	0.0019597	-0.44152	-0.00041457	1.6455	0.0015451	938.977918734398	11.474	0.12415	11.474	11.429	11.553	0	279	46	1.13799159301878	0.0299581571070404	1.13799159301878	459.150099707204	0	12.0873395788915						420	15	4	NaN	NaN	NaN	4.2581E-26	1	29066	208.23	163.63	1	116410			5100	280	4346	4448	5100	5100		
EQLFAVSHDK	10	Unmodified	_EQLFAVSHDK_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.29857	1172.58259	1.282	0.00075294	0.99587	0.00058487	2.2779	0.0013378	587.298887209546	5.4076	0.16844	5.4076	5.3189	5.4873	0	570	25	0.942920803299286	0.016196370719784	0.942920803299286	382.114589682255	0	6.56350939578067						227	20	3	NaN	NaN	NaN	0.00079148	1	8670	74.424	13.835	1	48597			5101	1966	4347	4449	5101	5101		
EQLGEEIDSK	10	Unmodified	_EQLGEEIDSK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.2775	1146.54045	2.1281	0.0012221	1.3567	0.00077911	3.4848	0.0020013	574.278228175693	5.1327	0.54982	5.1327	4.8755	5.4254	0	606	61	0.918606045818476	0.0405808101863621	0.918606045818476	372.359431147116	0	16.4495405459903						906	63	3	NaN	NaN	NaN	0.00048283	1	7964	83.358	59.783	1	481620			5102	3011	4348	4450	5102	5102		
EQLHLVMQGDVIR	13	Unmodified	_EQLHLVMQGDVIR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.276692	1536.80825	-1.5472	-0.00079412	-0.31024	-0.00015924	-1.8574	-0.00095336	513.276354224746	10.498	0.070981	10.498	10.463	10.534	0	780	28	0.800512323802183	0.0184001219300317	0.800512323802183	485.260128853817	0	11.1539139038908						101	9	2	NaN	NaN	NaN	0.00021177	1	19639	74.849	51.951	1	25862			5103	2698	4349	4451	5103	5103		
EQLMFPFHFVDR	12	Unmodified	_EQLMFPFHFVDR_			0	0	0	P82933	P82933	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.5905	1564.74967	-2.3048	-0.0012045	0.074842	3.9112E-05	-2.2299	-0.0011653	522.590322939864	15.996	0.070929	15.996	15.961	16.032	0	777	37	0.802556497112065	0.024531790781615	0.802556497112065	486.421811576306	0	14.8684835972836						170	9	3	NaN	NaN	NaN	0.0135	1	20484	34.193	29.665	1	32192			5104	1478	4350	4452	5104	5104		
EQLMFPFHFVDR	12	Unmodified	_EQLMFPFHFVDR_			0	0	0	P82933	P82933	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.5905	1564.74967	-0.79087	-0.0004133	-1.0406	-0.00054382	-1.8315	-0.00095712	522.589966262285	16.005	0.13298	16.005	15.952	16.085	0	708	40	0.849494101904619	0.0264967721372047	0.849494101904619	514.87024963901	0	16.0594401471693						346	16	4	NaN	NaN	NaN	0.0019693	1	20485	79.311	71.753	1	101020			5105	1478	4350	4452	5105	5105		
EQLMFPFHFVDR	12	Unmodified	_EQLMFPFHFVDR_			0	0	0	P82933	P82933	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.382111	1564.74967	1.0063	0.00078833	0.24831	0.00019452	1.2546	0.00098285	783.382308272315	16.005	0.12413	16.005	15.934	16.058	0	402	40	1.05585747106793	0.0261143777195971	1.05585747106793	426.632478483595	0	10.5518424558761						294	15	3	NaN	NaN	NaN	0.00014124	1	20486	97.175	66.826	1	62588			5106	1478	4350	4452	5106	5106		
EQLQLLEEQHR	11	Unmodified	_EQLQLLEEQHR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.870422	1421.72629	2.0315	0.0014462	-2.7676	-0.0019702	-0.7361	-0.00052401	711.86824830582	7.1634	0.12413	7.1634	7.1191	7.2432	0	447	34	1.02569221487577	0.0221425729106015	1.02569221487577	414.809338495433	0	8.95487543770224						319	15	4	NaN	NaN	NaN	1.7767E-11	1	16152	116.13	69.685	1	95800			5107	1816	4351	4453	5107	5107		
EQLSDMMMINK	11	Unmodified	_EQLSDMMMINK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.306366	1338.59818	-0.023783	-1.5942E-05	4.2277	0.0028338	4.2039	0.0028179	670.309812902911	11.935	0.13302	11.935	11.899	12.032	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	397.108437035345	0	8.17103131755266						323	16	4	NaN	NaN	NaN	0.002805	1	13544	76.605	36.102	1	110880			5108	1095	4352	4454	5108	5108		
EQLSGSPWILLR	12	Unmodified	_EQLSGSPWILLR_			0	0	0	Q8NB16	Q8NB16	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.890626	1397.7667	0.86834	0.00060774	-1.6548	-0.0011582	-0.78647	-0.00055044	699.889573432846	16.094	0.16851	16.094	16.023	16.191	0	489	37	0.997481546940468	0.0242039733351906	0.997481546940468	403.46701992269	0	9.79016105289458						378	20	4	NaN	NaN	NaN	2.8235E-05	1	15385	85.622	49.411	1	205510			5109	2281	4353	4455	5109	5109		
EQLWLANEGLITR	13	Unmodified	_EQLWLANEGLITR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.917372	1541.82019	1.3757	0.0010619	-0.66562	-0.00051381	0.71004	0.00054809	771.917242650924	14.728	0.15077	14.728	14.631	14.781	0	411	49	1.04982941439551	0.0321518628889854	1.04982941439551	424.252100824884	0	12.9930588617961						449	18	4	NaN	NaN	NaN	4.4209E-11	1	19786	147.72	99.022	1	270530			5110	1095	4354	4456	5110	5110		
EQMAQQLAEETQGFQR	16	Unmodified	_EQMAQQLAEETQGFQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.441614	1892.86867	2.2206	0.0021039	-1.3704	-0.0012984	0.85014	0.00080546	947.439124551633	11.5	0.17741	11.5	11.429	11.607	0	282	79	1.13599383354359	0.0519239289786262	1.13599383354359	458.313970146899	0	20.9485838154478						595	21	3	NaN	NaN	NaN	5.31E-18	1	29436	146.37	130.08	1	169250			5111	1816	4355	4457	5111	5111		
EQMDNAVYTFETLLHQELGK	20	Unmodified	_EQMDNAVYTFETLLHQELGK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.382614	2365.12601	0.82257	0.00064932	-0.61397	-0.00048465	0.20861	0.00016467	789.716445602252	19.907	0.035443	19.907	19.898	19.933	0	456	43	1.01965166402748	0.0282028744341156	1.01965166402748	616.165078563957	0	17.0427087548576						168	5	5	NaN	NaN	NaN	5.9119E-11	1	36179	92.593	87.759	1	65591			5112	2633	4356	4458	5112	5112		
EQMEAEIAHLK	11	Unmodified	_EQMEAEIAHLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.824095	1297.63364	1.7635	0.001146	3.7169	0.0024154	5.4805	0.0035613	649.82547444278	7.4028	0.17733	7.4028	7.2964	7.4738	0	498	34	0.991429299781895	0.0221977126906285	0.991429299781895	401.321936320849	0	8.98544055623199						269	21	4	NaN	NaN	NaN	0.0022819	1	12287	72.042	56.46	1	62526			5113	2167	4357	4459	5113	5113		
EQNIVFNAETYSNLIK	16	Unmodified	_EQNIVFNAETYSNLIK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.980898	1881.94724	2.3518	0.0022153	-2.0893	-0.0019681	0.26245	0.00024722	942.480172329345	15.535	0.30159	15.535	15.429	15.73	0	231	73	1.16991841121525	0.0478639195412385	1.16991841121525	472.020692261159	0	19.3113983159898						1101	35	6	NaN	NaN	NaN	1.1227E-08	1	29189	130.78	120.3	1	426420			5114	1055	4358	4460	5114	5114		
EQNSALPTSSQDEELMEVVEK	21	Unmodified	_EQNSALPTSSQDEELMEVVEK_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1182.04958	2362.0846	0.78253	0.00092499	2.5052	0.0029612	3.2877	0.0038862	1182.55388138883	14.125	0.079813	14.125	14.09	14.169	0	69	58	1.27715511956461	0.0376100012347553	1.27715511956461	514.519664454138	0	15.1517109542831						216	10	4	NaN	NaN	NaN	0.043425	1	36147	24.172	23.297	1	34070			5115	3318	4359	4461	5115	5115		
EQNYDLTEVSESMK	14	Unmodified	_EQNYDLTEVSESMK_			0	0	0	O95905	O95905	O95905	ECD	Protein SGT1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.872167	1671.72978	2.2955	0.0019211	0.1902	0.00015917	2.4857	0.0020802	836.872355913822	10.285	0.070934	10.285	10.241	10.312	0	327	31	1.10599442759226	0.0200230200251346	1.10599442759226	446.640004164716	0	8.0860097703071						179	9	3	NaN	NaN	NaN	0.00026264	1	23658	69.641	66.538	1	37607			5116	462	4360	4462	5116	5116		
EQPFGEGVPLDGDDPEHIQWIFQK	24	Unmodified	_EQPFGEGVPLDGDDPEHIQWIFQK_			0	0	0	Q8TBC4	Q8TBC4	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	927.77668	2780.30821	0.35259	0.00032713	0.74696	0.00069301	1.0996	0.0010201	928.111578406841	17.353	0.11528	17.353	17.3	17.415	0	471	58	1.00957851518677	0.0383044341449628	1.00957851518677	609.545780882081	0	23.1267859516781						447	14	4	NaN	NaN	NaN	0.0043329	1	37840	51.577	40.214	1	80004			5117	2336	4361	4463	5117	5117		
EQPLDEELK	9	Unmodified	_EQPLDEELK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.777136	1099.53972	0.90952	0.00050094	1.2934	0.00071236	2.2029	0.0012133	550.777761509201	6.4983	0.29262	6.4983	6.4008	6.6934	0	624	49	0.906433495720521	0.032478149233901	0.906433495720521	367.611839993028	0	13.1717906010875						525	33	2	NaN	NaN	NaN	0.0092428	1	6694	51.864	34.468	1	233720			5118	522	4362	4464	5118	5118		
EQPPTEPGPQSASEVEK	17	Unmodified	_EQPPTEPGPQSASEVEK_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.428695	1808.84284	2.3133	0.0020946	-2.094	-0.0018959	0.21937	0.00019863	905.426623251617	5.2657	0.09759	5.2657	5.2302	5.3278	0	351	28	1.08996939197032	0.0180343754835834	1.08996939197032	439.894128976418	0	7.27838410273512						129	12	2	NaN	NaN	NaN	0.021139	1	27454	50.641	39.159	1	27092			5119	3137	4363	4465	5119	5119		
EQQDLEFAK	9	Unmodified	_EQQDLEFAK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.269478	1106.5244	1.1133	0.00061709	2.3012	0.0012755	3.4146	0.0018926	554.270594930964	5.8775	0.088674	5.8775	5.8243	5.913	0	585	37	0.932794566565362	0.0243147574808095	0.932794566565362	378.273234528139	0	9.86028680773683						252	11	4	NaN	NaN	NaN	0.0062155	1	6883	51.864	41.785	1	149320			5120	191	4364	4466	5120	5120		
EQQEAIEHIDEVQNEIDR	18	Unmodified	_EQQEAIEHIDEVQNEIDR_			0	0	0	Q01105;P0DME0	Q01105	Q01105	SET;SETSIP	Protein SET;Protein SETSIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.345216	2194.01382	1.3228	0.00096875	0.31509	0.00023076	1.6379	0.0011995	732.679898122565	10.383	0.1951	10.383	10.33	10.525	0	609	97	0.916577990479294	0.0648573914274829	0.916577990479294	554.130811938191	0	39.2104974647174						1286	23	6	NaN	NaN	NaN	5.4995E-45	1	34609	334.4	309.66	1	760790			5121	1513	4365	4467	5121	5121		
EQQEAIEHIDEVQNEIDRLNEQASEEILK	29	Unmodified	_EQQEAIEHIDEVQNEIDRLNEQASEEILK_			0	0	1	Q01105	Q01105	Q01105	SET	Protein SET	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	863.172127	3448.6594	1.146	0.00098917	-0.19856	-0.00017139	0.94741	0.00081778	863.423382914954	17.362	0.20395	17.362	17.3	17.504	0	540	244	0.963152256458504	0.163819337097055	0.963152256458504	774.604530232978	0	131.749886691574						3173	24	8	NaN	NaN	NaN	2.3794E-96	1	38632	347.66	345.36	1	1935700			5122	1513	4366	4468	5122	5122		
EQQEPSSGGSVVPTVQEPK	19	Unmodified	_EQQEPSSGGSVVPTVQEPK_			0	0	0	Q96JJ7	Q96JJ7	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.986908	1981.95926	2.602	0.0025811	-1.7728	-0.0017586	0.82918	0.00082254	992.486383725999	7.2255	0.16848	7.2255	7.1723	7.3408	0	252	28	1.15595906938629	0.0179575970541841	1.15595906938629	466.216324905738	0	7.24257901898267						302	20	3	NaN	NaN	NaN	5.2393E-07	1	31315	92.593	83.787	1	56590			5123	2569	4367	4469	5123	5123		
EQQESLALEELELQK	15	Unmodified	_EQQESLALEELELQK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.957088	1785.89962	1.7274	0.0015442	-0.2277	-0.00020356	1.4997	0.0013407	893.956796653752	13.159	0.15074	13.159	13.07	13.221	0	285	37	1.13399579921816	0.0239747667739112	1.13399579921816	457.707204657337	0	9.67677613088529						192	18	3	NaN	NaN	NaN	0.0034415	1	26852	70.806	62.432	1	41724			5124	1668	4368	4470	5124	5124		
EQQHVMEELFQSSFR	15	Unmodified	_EQQHVMEELFQSSFR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.296592	1893.86795	0.31166	0.00019706	-0.012618	-7.9781E-06	0.29904	0.00018908	632.630827708221	13.788	0.14185	13.788	13.717	13.859	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	539.94146824042	0	12.2944087261101						285	17	4	NaN	NaN	NaN	9.9409E-07	1	29458	133.49	99.764	1	79451			5125	1465	4369	4471	5125	5125		
EQQHVMEELFQSSFR	15	Unmodified	_EQQHVMEELFQSSFR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.94125	1893.86795	2.3429	0.0022209	1.0825	0.0010261	3.4254	0.0032471	947.942681043739	13.788	0.133	13.788	13.744	13.877	0	252	52	1.15595906938629	0.0339199138812398	1.15595906938629	466.367097492219	0	13.6848545964334						721	16	5	NaN	NaN	NaN	3.8382E-09	1	29459	126.32	109.56	1	305530			5126	1465	4369	4471	5126	5126		
EQQILTLFR	9	Unmodified	_EQQILTLFR_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.327131	1146.63971	0.54242	0.00031153	-4.4884	-0.0025778	-3.946	-0.0022663	574.323871126018	14.356	0.20394	14.356	14.302	14.506	0	606	46	0.918606045818476	0.0304166222504839	0.918606045818476	372.359073994303	0	12.3294478049439						381	24	3	NaN	NaN	NaN	0.00033801	1	7979	94.806	78.349	1	122520			5127	1951	4370	4472	5127	5127		
EQQIVIQSSGGLSK	14	Unmodified	_EQQIVIQSSGGLSK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.399012	1472.78347	2.1368	0.0015756	-0.067531	-4.9798E-05	2.0692	0.0015259	737.398878543705	7.2698	0.34581	7.2698	7.2166	7.5624	0	438	46	1.03173026378327	0.0301860841315895	1.03173026378327	417.111837054461	0	12.2037449589176						398	40	2	NaN	NaN	NaN	0.01012	1	17678	31.801	24.243	1	240610			5128	1007	4371	4473	5128	5128		
EQQIVIQSSGGLSK	14	Unmodified	_EQQIVIQSSGGLSK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.399012	1472.78347	2.0695	0.0015261	0.3395	0.00025034	2.409	0.0017764	737.399398918162	7.1368	0.28385	7.1368	7.0569	7.3408	0	453	73	1.02166545906632	0.0483344518917967	1.02166545906632	413.042797937258	0	19.5408360623217						1316	33	5	NaN	NaN	NaN	5.2918E-24	1	17679	209.43	154.99	1	1924900			5129	1007	4371	4473	5129	5129		
EQQLAEIEAR	10	Unmodified	_EQQLAEIEAR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.806759	1185.59897	1.2465	0.00074019	-0.0020687	-1.2284E-06	1.2444	0.00073896	593.807498705361	6.2678	0.25718	6.2678	6.1968	6.454	0	582	37	0.934820374997243	0.024311389219916	0.934820374997243	378.783568901484	0	9.85082805207367						406	30	3	NaN	NaN	NaN	0.00094812	1	9021	76.572	36.07	1	105010			5130	1452;1818	4372	4474	5130	5130		
EQSEVGSMGALLF	13	Unmodified	_EQSEVGSMGALLF_			0	0	0	P61619	P61619	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.32921	1366.64387	0.077382	5.2955E-05	-1.0235	-0.00070042	-0.94613	-0.00064746	684.328610074977	18.763	0.070925	18.763	18.727	18.798	0	537	28	0.965173861991602	0.0181944515400058	0.965173861991602	390.486100285219	0	7.36103691621418						156	9	3	NaN	NaN	NaN	0.0064067	1	14388	65.933	63.261	1	38510			5131	1348	4373	4475	5131	5131		
EQSGTIYLQHADEER	15	Unmodified	_EQSGTIYLQHADEER_			0	0	0	P37198	P37198	P37198	NUP62	Nuclear pore glycoprotein p62	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.413379	1774.81221	3.3979	0.0030188	-1.6622	-0.0014767	1.7358	0.0015421	888.412168753342	5.6115	0.062194	5.6115	5.5849	5.6471	0	351	61	1.08996939197032	0.0400736445375593	1.08996939197032	439.958296745827	0	16.1754380673677						178	8	2	NaN	NaN	NaN	0.0056181	1	26530	37.146	28.771	1	35956			5132	998	4374	4476	5132	5132		
EQSGTIYLQHADEEREK	17	Unmodified	_EQSGTIYLQHADEEREK_			0	0	1	P37198	P37198	P37198	NUP62	Nuclear pore glycoprotein p62	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.323864	2031.94976	1.5712	0.0010658	0.98223	0.00066627	2.5534	0.001732	678.658602981548	4.645	0.07095	4.645	4.6184	4.6893	0	594	28	0.926715457081489	0.0182398570098127	0.926715457081489	560.540370169115	0	11.0327027805396						147	9	4	NaN	NaN	NaN	0.065526	1	32184	19.006	17.531	1	31163			5133	998	4375	4477	5133	5133		
EQSICAAEEQPAEDGQGETNK	21	Unmodified	_EQSICAAEEQPAEDGQGETNK_			0	0	0	Q9UGP8	Q9UGP8	Q9UGP8	SEC63	Translocation protein SEC63 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1145.99005	2289.96555	2.7493	0.0031507	-2.0169	-0.0023113	0.73249	0.00083942	1146.48921495745	4.9908	0.044347	4.9908	4.9731	5.0174	0	180	34	1.203763835057	0.0218699317424758	1.203763835057	485.042321428399	0	8.81222890480728						92	6	3	NaN	NaN	NaN	5.914E-11	1	35559	92.593	90.492	1	14764			5134	3205	4376	4478	5134	5134		
EQSIFGDHRDEEEETHMK	18	Unmodified	_EQSIFGDHRDEEEETHMK_			0	0	1	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	739.655285	2215.94402	1.7626	0.0013037	0.27635	0.0002044	2.0389	0.0015081	739.989636748404	5.1681	0.062063	5.1681	5.1415	5.2036	0	561	37	0.948993180460448	0.0242844683109597	0.948993180460448	573.692200695006	0	14.6806219000046						233	8	4	NaN	NaN	NaN	0.019522	1	34853	48.363	46.653	1	51688			5135	1897	4377	4479	5135	5135		
EQSIFGDHRDEEEETHMK	18	Unmodified	_EQSIFGDHRDEEEETHMK_			0	0	1	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	554.993283	2215.94402	0.11628	6.4533E-05	2.6009	0.0014435	2.7172	0.001508	555.245588771837	5.1681	0.062063	5.1681	5.1415	5.2036	0	735	25	0.831145085810763	0.0163227098451795	0.831145085810763	669.931189747009	0	13.1566589433775						166	8	4	NaN	NaN	NaN	0.013896	1	34854	17.889	17.491	1	39701			5136	1897	4377	4479	5136	5136		
EQSQPCADNAVLSSGLTAAR	20	Unmodified	_EQSQPCADNAVLSSGLTAAR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.99474	2073.97493	2.5518	0.0026487	-0.41821	-0.0004341	2.1336	0.0022146	1038.4952103206	9.7889	0.097535	9.7889	9.7534	9.8509	0	174	43	1.20774045859593	0.0278363710639469	1.20774045859593	486.950236694784	0	11.2233778224762						273	12	3	NaN	NaN	NaN	2.0228E-05	1	32922	58.045	45.362	1	49375			5137	772	4378	4480	5137	5137		
EQSTCNFQAIVISLK	15	Unmodified	_EQSTCNFQAIVISLK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.445637	1736.87672	1.8776	0.0016325	2.2633	0.0019678	4.1409	0.0036003	869.949474587667	15.109	0.11529	15.109	15.074	15.189	0	282	37	1.13599383354359	0.0239747667739112	1.13599383354359	458.613342957059	0	9.67887994823116						358	14	4	NaN	NaN	NaN	0.0046177	1	25521	28.277	23.75	1	87171			5138	1764	4379	4481	5138	5138		
EQTEGEYSSLEHESAR	16	Unmodified	_EQTEGEYSSLEHESAR_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.403209	1850.79186	2.9175	0.0027028	-1.433	-0.0013276	1.4845	0.0013752	926.402131907363	4.8578	0.062051	4.8578	4.8312	4.8933	0	315	28	1.11400032671325	0.0180095545352803	1.11400032671325	449.515084346366	0	7.26711315233831						149	8	3	NaN	NaN	NaN	0.003168	1	28501	39.82	39.081	1	31373			5139	239	4380	4482	5139	5139		
EQTEGEYSSLEHESAR	16	Unmodified	_EQTEGEYSSLEHESAR_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.937898	1850.79186	1.9742	0.00122	1.5784	0.00097536	3.5527	0.0021953	618.273384675177	4.8578	0.088646	4.8578	4.8312	4.9199	0	591	34	0.928742107665821	0.0222900711025618	0.928742107665821	562.138822817897	0	13.4914894314558						205	11	4	NaN	NaN	NaN	8.668E-08	1	28503	84.102	77.355	1	74214			5140	239	4380	4482	5140	5140		
EQTEQILR	8	Unmodified	_EQTEQILR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.772188	1015.52982	0.66209	0.00033685	-2.7001	-0.0013737	-2.038	-0.0010369	508.771825355176	4.6627	0.21282	4.6627	4.5918	4.8046	0	702	67	0.853568545818287	0.0447940149078141	0.853568545818287	346.526244358503	0	18.1851848123842						461	25	2	NaN	NaN	NaN	0.060102	1	4640	44.767	29.185	1	152900			5141	801	4381	4483	5141	5141		
EQTFSGGTSQDTK	13	Unmodified	_EQTFSGGTSQDTK_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.312603	1384.61065	2.5811	0.0017895	-1.1116	-0.0007707	1.4695	0.0010188	693.311984426306	2.6853	0.23056	2.6853	2.6498	2.8804	0	561	37	0.948993180460448	0.0242878309785073	0.948993180460448	383.889892988142	0	9.82499455973891						399	27	3	NaN	NaN	NaN	0.00047059	1	14956	60	36.947	1	73723			5142	3355	4382	4484	5142	5142		
EQTLSPTITSGLHNIAR	17	Unmodified	_EQTLSPTITSGLHNIAR_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.330402	1836.96938	1.2864	0.00078897	2.8742	0.0017628	4.1606	0.0025518	613.331856158962	10.41	0.088635	10.41	10.365	10.454	0	528	22	0.971237000454584	0.0141453664732367	0.971237000454584	587.892528177534	0	8.5622306955529						145	11	4	NaN	NaN	NaN	0.00013519	1	28166	84.999	84.847	1	29252			5143	400	4383	4485	5143	5143		
EQTVSVSGAFQINTFDLR	18	Unmodified	_EQTVSVSGAFQINTFDLR_			0	0	0	P13473	P13473	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.50781	2011.00107	1.2849	0.0012932	-0.9394	-0.00094552	0.34548	0.00034773	1006.50748895569	16.165	0.18622	16.165	16.129	16.315	0	183	52	1.20177511391933	0.0338036309766956	1.20177511391933	484.645964534908	0	13.6321622487703						363	22	3	NaN	NaN	NaN	0.012138	1	31822	52.201	47.955	1	85834			5144	677	4384	4486	5144	5144		
EQVANSAFVER	11	Unmodified	_EQVANSAFVER_			0	0	0	P08238;Q58FF7	P08238	P08238	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.312209	1248.60986	2.1804	0.0013634	-1.0808	-0.00067586	1.0996	0.00068759	625.311553955644	5.5317	0.22171	5.5317	5.4254	5.6471	0	552	124	0.955063035883597	0.0828859935203006	0.955063035883597	386.76105547749	0	33.5654015847797						905	26	4	NaN	NaN	NaN	8.7353E-17	1	10874	179.31	118.42	1	758970			5145	579	4385	4487	5145	5145		
EQVDAALGAEEMVEMLTDR	19	Unmodified	_EQVDAALGAEEMVEMLTDR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.98774	2105.96092	1.5018	0.0015828	0.71941	0.00075825	2.2212	0.0023411	1054.48953887353	19.889	0.044342	19.889	19.88	19.924	0	150	31	1.22363604450103	0.0198613079244068	1.22363604450103	493.309353239112	0	8.00709411160517						136	6	4	NaN	NaN	NaN	6.8103E-05	1	33399	65.421	57.053	1	25681			5146	1736	4386	4488	5146	5146		
EQVEEDNEVSSGLK	14	Unmodified	_EQVEEDNEVSSGLK_			0	0	0	Q14789	Q14789	Q14789	GOLGB1	Golgin subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.862657	1561.71076	1.7244	0.0013482	-1.1566	-0.00090431	0.56777	0.00044392	781.861602809754	5.3898	0.11527	5.3898	5.3366	5.4519	0	435	25	1.03374239103424	0.0160959081053016	1.03374239103424	417.703737026212	0	6.50386501001321						146	14	3	NaN	NaN	NaN	5.3518E-08	1	20385	115.04	84.689	1	28694			5147	1775	4387	4489	5147	5147		
EQVEVVEFHSNK	12	Unmodified	_EQVEVVEFHSNK_			0	0	0	Q8NDD1	Q8NDD1	Q8NDD1	C1orf131	Uncharacterized protein C1orf131	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.85698	1443.69941	2.3157	0.0016739	-0.32044	-0.00023163	1.9953	0.0014423	722.856347194439	5.9573	0.09758	5.9573	5.9307	6.0283	0	435	31	1.03374239103424	0.0201198859944203	1.03374239103424	418.003662678412	0	8.13566910990812						198	12	3	NaN	NaN	NaN	1.5807E-07	1	16771	139.78	118.69	1	43804			5148	2306	4388	4490	5148	5148		
EQVFLVPTGEVFEQQVK	17	Unmodified	_EQVFLVPTGEVFEQQVK_			0	0	0	Q6BDS2	Q6BDS2	Q6BDS2	UHRF1BP1	UHRF1-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.020023	1976.02549	0.87488	0.00086527	3.5177	0.003479	4.3926	0.0043443	990.029238055061	15.908	0.088703	15.908	15.863	15.952	0	174	43	1.20774045859593	0.0278401917044975	1.20774045859593	487.110721284035	0	11.2286176763751						293	11	4	NaN	NaN	NaN	0.016556	1	31221	42.446	36.831	1	53126			5149	2028	4389	4491	5149	5149		
EQVLLDWAR	9	Unmodified	_EQVLLDWAR_			0	0	0	Q14146	Q14146	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.303655	1128.59276	0.19737	0.00011158	0.79383	0.00044875	0.9912	0.00056033	565.303946297808	13.176	0.13302	13.176	13.123	13.256	0	615	25	0.912521036363781	0.016227817631378	0.912521036363781	369.96275430255	0	6.57923255243259						142	16	2	NaN	NaN	NaN	0.0084408	1	7492	54.436	37.041	1	31480			5150	1726	4390	4492	5150	5150		
EQVPGFTPR	9	Unmodified	_EQVPGFTPR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.769448	1029.52434	0.54053	0.00027879	-0.49873	-0.00025723	0.041801	2.1559E-05	515.768717049278	6.6402	0.15962	6.6402	6.5249	6.6845	0	684	85	0.86578508874114	0.0570105850452051	0.86578508874114	351.421940876462	0	23.1405815457268						482	19	3	NaN	NaN	NaN	0.023342	1	4976	48.157	11.588	1	157270			5151	656	4391	4493	5151	5151		
EQVPSGAELER	11	Unmodified	_EQVPSGAELER_			0	0	0	Q8WWI1	Q8WWI1	Q8WWI1	LMO7	LIM domain only protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.804217	1213.59388	1.3304	0.00080863	-2.9203	-0.001775	-1.5899	-0.00096636	608.303483602185	5.5317	0.21275	5.5317	5.4164	5.6292	0	597	64	0.924688525662974	0.0425361068960246	0.924688525662974	374.578782583128	0	17.2308000961892						420	25	3	NaN	NaN	NaN	0.019519	1	9830	46.033	33.437	1	88330			5152	2389	4392	4494	5152	5152		
EQVPSLGSNVACGLAYTDYHK	21	Unmodified	_EQVPSLGSNVACGLAYTDYHK_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.367075	2308.0794	0.83136	0.00064046	1.3513	0.001041	2.1827	0.0016815	770.702548468598	11.899	0.12416	11.899	11.846	11.97	0	447	28	1.02569221487577	0.0181191516407753	1.02569221487577	619.904740022711	0	10.9507977387419						368	15	5	NaN	NaN	NaN	8.8787E-06	1	35699	110.06	102.42	1	125210			5153	6	4393	4495	5153	5153		
EQVYDAMGEK	10	Unmodified	_EQVYDAMGEK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.260796	1168.50704	0.75462	0.00044165	2.5821	0.0015112	3.3367	0.0019529	585.262680727673	5.2657	0.19511	5.2657	5.177	5.3721	0	618	34	0.910492137470517	0.0223178910428838	0.910492137470517	368.987968299759	0	9.04459570131735						266	23	3	NaN	NaN	NaN	0.00094314	1	8560	57.888	24.462	1	64322			5154	1126	4394	4496	5154	5154		
EQWIQDAEECDR	12	Unmodified	_EQWIQDAEECDR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.828094	1577.64164	2.0807	0.0016434	-0.87708	-0.00069274	1.2036	0.00095066	789.827649386352	8.4584	0.10642	8.4584	8.4051	8.5116	0	438	40	1.03173026378327	0.0261576594975734	1.03173026378327	416.853698414808	0	10.568573479133						410	13	4	NaN	NaN	NaN	2.4935E-08	1	20889	125.17	117.52	1	160620			5155	396	4395	4497	5155	5155		
EQWPQCPTIK	10	Unmodified	_EQWPQCPTIK_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.81353	1285.61251	1.6499	0.0010622	0.63428	0.00040836	2.2841	0.0014706	643.814216153426	8.0947	0.1686	8.0947	8.0414	8.21	0	552	61	0.955063035883597	0.0404629208582415	0.955063035883597	386.639277803455	0	16.3806512352087						541	20	3	NaN	NaN	NaN	0.00057327	1	11922	83.358	68.595	1	217070			5156	566	4396	4498	5156	5156		
EQWWLSLR	8	Unmodified	_EQWWLSLR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.293091	1116.57163	0.20123	0.00011254	0.096485	5.3964E-05	0.29771	0.00016651	559.292802783036	15.437	0.13312	15.437	15.393	15.526	0	621	28	0.908462957275599	0.0182651557513902	0.908462957275599	368.365341364686	0	7.4061911710935						281	16	3	NaN	NaN	NaN	0.0033963	1	7180	79.809	50.5	1	96378			5157	744	4397	4499	5157	5157		
EQYAQEHGLNFQR	13	Unmodified	_EQYAQEHGLNFQR_			0	0	0	Q15126	Q15126	Q15126	PMVK	Phosphomevalonate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.381685	1618.74882	3.0413	0.0024646	-1.2023	-0.00097429	1.8391	0.0014904	810.379684425533	6.0461	0.10642	6.0461	5.984	6.0904	0	387	31	1.06589869032374	0.0200782861239661	1.06589869032374	430.563718045176	0	8.11050956717474						203	13	3	NaN	NaN	NaN	2.6923E-05	1	22144	88.734	78.484	1	53358			5158	1815	4398	4500	5158	5158		
ERDFTSLENTVEER	14	Unmodified	_ERDFTSLENTVEER_			0	0	1	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.607712	1723.80131	-0.65827	-0.0003789	-0.17392	-0.00010011	-0.83219	-0.00047901	575.607682582971	9.1149	0.088693	9.1149	9.0794	9.1681	0	732	34	0.833184998970724	0.0224359291106897	0.833184998970724	504.577035107309	0	13.5872040477619						239	11	3	NaN	NaN	NaN	2.0811E-06	1	25149	101.64	90.161	1	77464			5159	1567	4399	4501	5159	5159		
ERDVYEELLTQAEIQGNINK	20	Unmodified	_ERDVYEELLTQAEIQGNINK_			0	0	1	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.067683	2361.18122	0.29467	0.00023222	1.7505	0.0013795	2.0452	0.0016117	788.403387455516	14.852	0.11526	14.852	14.808	14.923	0	453	73	1.02166545906632	0.0483812177917015	1.02166545906632	617.388007367968	0	29.2365601492997						557	14	5	NaN	NaN	NaN	6.3476E-11	1	36143	104.86	94.945	1	112900			5160	1095	4400	4502	5160	5160		
EREEFLIPIYHQVAVQFADLHDTPGR	26	Unmodified	_EREEFLIPIYHQVAVQFADLHDTPGR_			0	0	1	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	770.895169	3079.55157	-0.14178	-0.00010929	0.35594	0.0002744	0.21417	0.0001651	771.146199931939	16.98	0.1419	16.98	16.901	17.043	0	486	22	0.999498404980629	0.0141180070903043	0.999498404980629	804.222621229936	0	11.3597186470022						287	17	5	NaN	NaN	NaN	6.4156E-10	1	38325	58.206	57.882	1	60209			5161	1625	4401	4503	5161	5161		
EREHLEMELEK	11	Unmodified	_EREHLEMELEK_			0	0	1	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.569653	1441.68713	1.0453	0.00050341	0.36703	0.00017675	1.4124	0.00068016	481.569914013403	4.9997	0.088659	4.9997	4.9819	5.0706	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	523.901691911245	0	11.1124809678232						140	11	3	NaN	NaN	NaN	0.012416	1	16717	58.889	47.534	1	31493			5162	2167	4402	4504	5162	5162		
ERHPGSFDVVHVK	13	Unmodified	_ERHPGSFDVVHVK_			0	0	1	P62701;P22090	P62701	P62701	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.931913	1505.77391	0.35311	0.00017759	1.3699	0.00068896	1.723	0.00086655	503.266846742197	4.3701	0.14188	4.3701	4.3258	4.4677	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	505.158671785195	0	9.89368059147949						182	17	3	NaN	NaN	NaN	0.016232	1	18682	42.446	41.394	1	40357			5163	1394	4403	4505	5163	5163		
ERLDQPMTEIVSR	13	Unmodified	_ERLDQPMTEIVSR_			0	0	1	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.271607	1572.79299	-1.2733	-0.00066884	-0.90617	-0.00047599	-2.1795	-0.0011448	525.271295905383	8.7068	0.09782	8.7068	8.6712	8.769	0	828	22	0.767766820543916	0.0143411262073633	0.767766820543916	465.315277387797	0	8.6916299853973						172	12	4	NaN	NaN	NaN	0.00051972	1	20753	92.707	81.92	1	40631			5164	804	4404	4506	5164	5164		
ERLEQQVPVNQVFGQDEMIDVIGVTK	26	Unmodified	_ERLEQQVPVNQVFGQDEMIDVIGVTK_			0	0	1	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	991.177967	2970.51207	1.5493	0.0015356	0.083796	8.3057E-05	1.6331	0.0016187	991.512599321697	16.44	0.19507	16.44	16.377	16.573	0	417	100	1.04580932352505	0.0663361617134348	1.04580932352505	631.219331695818	0	40.038529703371						1924	23	7	NaN	NaN	NaN	2.1269E-52	1	38173	214.87	204.27	1	987870			5165	1010	4405	4507	5165	5165		
ERLEQQVPVNQVFGQDEMIDVIGVTK	26	Oxidation (M)	_ERLEQQVPVNQVFGQDEM(Oxidation (M))IDVIGVTK_	ERLEQQVPVNQVFGQDEM(1)IDVIGVTK	ERLEQQVPVNQVFGQDEM(61)IDVIGVTK	0	1	1	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	996.509605	2986.50699	1.1395	0.0011355	0.71581	0.00071331	1.8553	0.0018488	996.844891781545	14.737	0.097557	14.737	14.71	14.808	0	420	49	1.04379886199097	0.0321696140017538	1.04379886199097	629.990145521348	0	19.416135181134						472	12	5	NaN	NaN	NaN	2.5338E-06	1	38202	61.003	56.137	1	126800			5166	1010	4405	4508	5166	5166	365	
ERPPNPIEFLASYLLK	16	Unmodified	_ERPPNPIEFLASYLLK_			0	0	1	Q9C005	Q9C005	Q9C005	DPY30	Protein dpy-30 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.684005	1886.03018	-1.1491	-0.00072354	0.23964	0.0001509	-0.90941	-0.00057264	630.01838243667	20.111	0.044338	20.111	20.093	20.137	0	720	40	0.841341816837976	0.0264967721372047	0.841341816837976	509.167430155076	0	16.0354485020245						168	6	4	NaN	NaN	NaN	3.1425E-06	1	29290	91.939	87.957	1	57671			5167	2817	4406	4509	5167	5167		
ERVEAVNMAEGIIHDTETK	19	Unmodified	_ERVEAVNMAEGIIHDTETK_			0	0	1	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	536.267847	2141.04228	0.42807	0.00022956	0.0074179	3.978E-06	0.43549	0.00023354	536.518756653344	12.272	0.23056	12.272	12.21	12.44	0	657	43	0.884090832094921	0.0284617756829997	0.884090832094921	712.762295093483	0	22.9461496735356						767	27	6	NaN	NaN	NaN	0.0022963	1	33901	73.305	70.411	1	552290			5168	1007	4407	4510	5168	5168		
ERVEAVNMAEGIIHDTETK	19	Unmodified	_ERVEAVNMAEGIIHDTETK_			0	0	1	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.688037	2141.04228	1.6852	0.0012044	1.1128	0.0007953	2.798	0.0019997	715.023630891047	12.272	0.27491	12.272	12.165	12.44	0	495	67	0.993446994398923	0.0443739691308193	0.993446994398923	600.696506396633	0	26.8311126634015						1517	32	7	NaN	NaN	NaN	5.531E-20	1	33902	218.9	179.73	1	2147700			5169	1007	4407	4510	5169	5169		
ERVEAVNMAEGIIHDTETK	19	Oxidation (M)	_ERVEAVNM(Oxidation (M))AEGIIHDTETK_	ERVEAVNM(1)AEGIIHDTETK	ERVEAVNM(160)AEGIIHDTETK	0	1	1	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.019675	2157.0372	1.5152	0.001091	-0.66744	-0.00048057	0.84778	0.00061042	720.353493189365	9.0262	0.14189	9.0262	8.9819	9.1238	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	593.345546409727	0	12.2088693910392						387	17	5	NaN	NaN	NaN	1.9713E-14	1	34132	164.28	139.1	1	148550			5170	1007	4407	4511	5170	5170	359	
ERVEELEHR	9	Unmodified	_ERVEELEHR_			0	0	1	Q08379	Q08379	Q08379	GOLGA2	Golgin subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.538793	1195.59455	-0.8103	-0.00032375	0.43712	0.00017465	-0.37318	-0.0001491	399.538907799567	2.4636	0.062071	2.4636	2.4547	2.5168	0	876	16	0.734948245421186	0.0102665320495471	0.734948245421186	446.647632591107	0	6.23924509435767						46	8	2	NaN	NaN	NaN	0.0087254	1	9310	65.933	53.866	1	7083.7			5171	1577	4408	4512	5171	5171		
ERVPYTDDGLEAIIFTAQGDMR	22	Unmodified	_ERVPYTDDGLEAIIFTAQGDMR_			0	0	1	P35250	P35250	P35250	RFC2	Replication factor C subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.072439	2496.19549	1.3467	0.0011219	-0.6133	-0.00051093	0.73342	0.00061099	833.40600532727	17.734	0.070945	17.734	17.708	17.779	0	471	25	1.00957851518677	0.0161248344128324	1.00957851518677	609.890922587658	0	9.74108500595048						159	9	4	NaN	NaN	NaN	0.00058846	1	36808	55.866	55.611	1	30537			5172	965	4409	4513	5172	5172		
ERWEQGQADYMGADSFDNIK	20	Unmodified	_ERWEQGQADYMGADSFDNIK_			0	0	1	P46976	P46976	P46976	GYG1	Glycogenin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.346451	2359.01752	1.5199	0.0011967	1.8265	0.0014381	3.3464	0.0026348	787.681271226128	10.942	0.070947	10.942	10.915	10.986	0	588	106	0.93076847747433	0.0708150830868013	0.93076847747433	562.462371944305	0	42.7934771819062						327	9	2	NaN	NaN	NaN	0.0017762	1	36117	57.62	56.525	1	98098			5173	1096	4410	4514	5173	5173		
ESAAHDYTLR	10	Unmodified	_ESAAHDYTLR_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.778002	1161.54145	1.7747	0.0010325	1.1891	0.00069181	2.9638	0.0017243	581.778447968845	3.2883	0.25712	3.2883	3.173	3.4301	0	609	37	0.916577990479294	0.0243383549190614	0.916577990479294	371.480326356496	0	9.8641033520621						324	30	3	NaN	NaN	NaN	0.07184	1	8372	33.426	14.17	1	63761			5174	1556	4411	4515	5174	5174		
ESADGLQGETQLLVSR	16	Unmodified	_ESADGLQGETQLLVSR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.933948	1701.85334	1.8685	0.0015919	1.4505	0.0012357	3.319	0.0028276	852.435942644358	11.518	0.10641	11.518	11.465	11.571	0	324	49	1.1079963157843	0.0320236055911389	1.1079963157843	447.383318176972	0	12.9303922091231						257	13	3	NaN	NaN	NaN	0.00023522	1	24557	41.87	39.154	1	48749			5175	1074	4412	4516	5175	5175		
ESADPLGAWLQDAR	14	Unmodified	_ESADPLGAWLQDAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.873162	1527.73177	1.4181	0.0010847	-1.3041	-0.00099745	0.11403	8.7221E-05	764.872354748761	16.049	0.19509	16.049	15.97	16.165	0	444	67	1.02770517576159	0.0443004570103382	1.02770517576159	415.345442413563	0	17.9039605424255						747	23	5	NaN	NaN	NaN	8.5666E-17	1	19349	160.62	141.29	1	398580			5176	1816	4413	4517	5176	5176		
ESAEFQTQLEK	11	Unmodified	_ESAEFQTQLEK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.317157	1308.61976	1.6735	0.0010967	0.32154	0.00021071	1.995	0.0013074	655.317186003315	6.4274	0.25713	6.4274	6.3299	6.587	0	534	37	0.967195187796614	0.0242575920930522	0.967195187796614	391.477569227553	0	9.81839375104352						423	30	4	NaN	NaN	NaN	2.4023E-05	1	12613	115.86	89.405	1	109650			5177	667	4414	4518	5177	5177		
ESAFEFLSSA	10	Unmodified	_ESAFEFLSSA_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.250754	1086.48696	-1.0302	-0.00056068	-0.38126	-0.0002075	-1.4115	-0.00076818	544.250565935374	17.486	0.088704	17.486	17.45	17.539	0	696	28	0.857641857947968	0.0183286333597692	0.857641857947968	347.875698052453	0	7.4344390555201						135	11	2	NaN	NaN	NaN	0.00097509	1	6372	82.716	76.968	1	31365			5178	1022	4415	4519	5178	5178		
ESALASADLEEEIHQK	16	Unmodified	_ESALASADLEEEIHQK_			0	0	0	P42696	P42696	P42696	RBM34	RNA-binding protein 34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.431238	1768.84792	2.0254	0.0017933	-1.1114	-0.00098407	0.91396	0.00080925	885.429997620332	9.1238	0.062057	9.1238	9.0972	9.1592	0	210	16	1.18386433251387	0.0099559005124521	1.18386433251387	477.870801421027	0	4.0187325744082						61	8	3	NaN	NaN	NaN	0.0025038	1	26380	72.846	67.459	1	9019.2			5179	1054	4416	4520	5179	5179		
ESCEVALDMYEHETGR	16	Unmodified	_ESCEVALDMYEHETGR_			0	0	0	Q9BU89	Q9BU89	Q9BU89	DOHH	Deoxyhypusine hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.40384	1924.79313	1.8471	0.0017795	0.39475	0.0003803	2.2419	0.0021598	963.906126674338	9.6381	0.044321	9.6381	9.6204	9.6647	0	231	28	1.16991841121525	0.0179403278515196	1.16991841121525	471.94378469661	0	7.23710828360174						78	6	3	NaN	NaN	NaN	0.060242	1	30165	19.197	18.39	1	11256			5180	2742	4417	4521	5180	5180		
ESCLEAYTGIVQGLK	15	Unmodified	_ESCLEAYTGIVQGLK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.615151	1666.82362	-1.4107	-0.00078519	0.91714	0.0005105	-0.49351	-0.00027469	556.615819739649	14.834	0.070949	14.834	14.799	14.87	0	669	52	0.875957769340875	0.0345871250376812	0.875957769340875	530.624687068233	0	20.9516748889838						273	9	3	NaN	NaN	NaN	0.045106	1	23540	41.824	38.319	1	56363			5181	1780	4418	4522	5181	5181		
ESCLEAYTGIVQGLK	15	Unmodified	_ESCLEAYTGIVQGLK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.419088	1666.82362	1.6258	0.0013566	-1.1251	-0.00093884	0.5007	0.00041779	834.917213175981	14.834	0.21282	14.834	14.764	14.976	-1.7764E-15	312	166	1.11600111266355	0.110073927056388	1.11600111266355	450.691970555446	0	44.4528545078397						2030	25	4	NaN	NaN	NaN	2.8753E-06	1	23542	90.689	76.911	1	1157200			5182	1780	4418	4522	5182	5182		
ESDLPSAILQTSGVSEFTK	19	Unmodified	_ESDLPSAILQTSGVSEFTK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.00731	2008.00007	1.0249	0.00103	0.24223	0.00024344	1.2671	0.0012735	1005.5100877627	16.289	0.22165	16.289	16.218	16.44	0	171	82	1.20972836110953	0.0536955167423183	1.20972836110953	487.858305550126	0	21.6542859171457						1202	26	6	NaN	NaN	NaN	5.8133E-05	1	31778	71.912	63.947	1	309310			5183	2640	4419	4523	5183	5183		
ESDTGLAPPALWDLAADK	18	Unmodified	_ESDTGLAPPALWDLAADK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.465081	1868.91561	1.0247	0.00095861	1.0597	0.00099132	2.0845	0.0019499	935.466309292656	17.309	0.31035	17.309	17.14	17.45	0	219	85	1.17788915118882	0.0558489291832294	1.17788915118882	475.260841872871	0	22.5342164621611						1551	36	4	NaN	NaN	NaN	0.0033909	1	28908	41.87	33.495	1	480420			5184	981	4420	4524	5184	5184		
ESDTPLQQVSIEEILEEQRVEQQTK	25	Unmodified	_ESDTPLQQVSIEEILEEQRVEQQTK_			0	0	1	O15116	O15116	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	986.16304	2955.46729	1.7354	0.0017114	-0.48061	-0.00047396	1.2548	0.0012375	986.496336837768	15.5	0.062083	15.5	15.473	15.535	0	261	25	1.14997238118939	0.0159699916858536	1.14997238118939	694.105520868927	0	9.63923967105814						98	8	4	NaN	NaN	NaN	0.00057014	1	38153	28.263	28.114	1	14908			5185	144	4421	4525	5185	5185		
ESDVGFIPTSGLSGENLITR	20	Unmodified	_ESDVGFIPTSGLSGENLITR_			0	0	0	Q9Y450	Q9Y450	Q9Y450	HBS1L	HBS1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.53148	2091.04841	1.5969	0.0016712	4.1812	0.0043758	5.7781	0.0060469	1046.53820009481	15.615	0.14181	15.615	15.553	15.695	0	147	88	1.22562176648663	0.0575938931885878	1.22562176648663	494.132970928496	0	23.2200849616077						572	17	3	NaN	NaN	NaN	0.00026189	1	33201	63.766	62.178	1	138360			5186	3404	4422	4526	5186	5186		
ESDWDGIIACHQGK	14	Unmodified	_ESDWDGIIACHQGK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.243828	1614.70965	-0.2862	-0.00015433	-0.098347	-5.3033E-05	-0.38455	-0.00020736	539.243738044793	8.7778	0.088786	8.7778	8.7334	8.8221	0	714	25	0.845418525735192	0.0163045710776146	0.845418525735192	512.261163850991	0	9.87936542914866						170	11	3	NaN	NaN	NaN	0.016601	1	22025	33.723	32.76	1	38270			5187	2329	4423	4527	5187	5187		
ESDWDGIIACHQGK	14	Unmodified	_ESDWDGIIACHQGK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.362104	1614.70965	2.6863	0.0021715	-0.2381	-0.00019247	2.4483	0.0019791	808.362175803117	8.769	0.079914	8.769	8.7334	8.8133	0	342	28	1.09598084995137	0.0180318910804229	1.09598084995137	442.724627968879	0	7.28403445234449						182	10	3	NaN	NaN	NaN	8.2452E-12	1	22026	171.34	162.53	1	39707			5188	2329	4423	4527	5188	5188		
ESDYFTPQGEFR	12	Unmodified	_ESDYFTPQGEFR_			0	0	0	Q8TCJ2	Q8TCJ2	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.325513	1474.63647	1.5386	0.001136	0.18413	0.00013595	1.7227	0.0012719	738.325573010864	10.135	0.16847	10.135	10.064	10.232	0	495	58	0.993446994398923	0.0383150231076109	0.993446994398923	401.629832831516	0	15.4899621342718						593	20	4	NaN	NaN	NaN	3.7675E-07	1	17718	108.93	95.655	1	160240			5189	2344	4424	4528	5189	5189		
ESEAVEWQQK	10	Unmodified	_ESEAVEWQQK_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.290942	1232.56733	2.4285	0.0014991	-0.31678	-0.00019555	2.1117	0.0013035	617.290798908285	5.0529	0.19506	5.0529	5.0085	5.2036	0	597	37	0.924688525662974	0.0243282375267269	0.924688525662974	374.513929837827	0	9.85333286755133						457	23	4	NaN	NaN	NaN	9.4687E-06	1	10383	146.27	110.06	1	194210			5190	846	4425	4529	5190	5190		
ESEDFIVEQYK	11	Unmodified	_ESEDFIVEQYK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.824815	1385.63508	1.9199	0.0013321	-1.0186	-0.00070671	0.90136	0.00062538	693.823940644425	9.7534	0.18622	9.7534	9.6647	9.8509	0	498	40	0.991429299781895	0.0262336619569801	0.991429299781895	401.053361880682	0	10.6120510303688						492	22	4	NaN	NaN	NaN	0.00040176	1	14996	102.55	78.424	1	208580			5191	1757	4426	4530	5191	5191		
ESEIIDFFLGASLK	14	Unmodified	_ESEIIDFFLGASLK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.913964	1567.81338	0.782	0.0006138	-0.28005	-0.00021982	0.50195	0.00039398	784.91355664796	20.049	0.04434	20.049	20.031	20.075	0	396	43	1.05987478976334	0.0281173586506349	1.05987478976334	428.248387865167	0	11.3609773809695						90	6	3	NaN	NaN	NaN	0.0009261	1	20594	50.09	42.532	1	37120			5192	717	4427	4531	5192	5192		
ESENVVCHFYR	11	Unmodified	_ESENVVCHFYR_			0	0	0	O14530	O14530	O14530	TXNDC9	Thioredoxin domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.550593	1438.62995	-1.3903	-0.00066811	1.6085	0.00077295	0.21816	0.00010484	480.551499421964	6.8353	0.053198	6.8353	6.8087	6.8619	0	777	16	0.802556497112065	0.0102208668462794	0.802556497112065	486.79516676838	0	6.19952439343007						62	7	2	NaN	NaN	NaN	0.024601	1	16625	31.952	30.308	1	16872			5193	101	4428	4532	5193	5193		
ESEPAPASVTALTDAR	16	Unmodified	_ESEPAPASVTALTDAR_			0	0	0	Q00613	Q00613	Q00613	HSF1	Heat shock factor protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.902116	1613.78968	1.8969	0.0015325	2.5806	0.0020849	4.4774	0.0036173	807.90521856205	9.4608	0.17735	9.4608	9.4076	9.5849	0	378	58	1.07192009927972	0.0381198356201773	1.07192009927972	433.007307396893	0	15.3986919280612						454	21	3	NaN	NaN	NaN	0.00013189	1	22005	47.57	44.692	1	115690			5194	1504	4429	4533	5194	5194		
ESEPQAAAEPAEAK	14	Unmodified	_ESEPQAAAEPAEAK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.336078	1426.6576	2.9915	0.0021369	-1.7336	-0.0012384	1.2579	0.00089858	714.334894695824	3.3592	0.50551	3.3592	3.2705	3.776	0	510	94	0.983355730988811	0.0626438341606588	0.983355730988811	397.674415302671	0	25.3335078416713						2794	58	4	NaN	NaN	NaN	4.8955E-06	1	16274	126.48	103.58	1	1239000			5195	1468	4430	4534	5195	5195		
ESESAPGDFSLSVK	14	Unmodified	_ESESAPGDFSLSVK_			0	0	0	P62993	P62993	P62993	GRB2	Growth factor receptor-bound protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.846278	1451.678	2.3032	0.001674	0.36713	0.00026685	2.6703	0.0019409	726.846407452024	9.8598	0.20392	9.8598	9.7889	9.9928	0	423	43	1.04178812298108	0.028152295306344	1.04178812298108	421.235053797508	0	11.3830570403869						623	24	4	NaN	NaN	NaN	0.0030405	1	17022	75.474	59.595	1	199680			5196	1420	4431	4535	5196	5196		
ESEVAELTVLERPSFVK	17	Unmodified	_ESEVAELTVLERPSFVK_			0	0	1	Q9Y6N7	Q9Y6N7	Q9Y6N7	ROBO1	Roundabout homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.01748	1932.02041	1.4646	0.0014163	-0.33513	-0.00032408	1.1294	0.0010922	967.51901861731	13.762	0.070926	13.762	13.726	13.797	0	156	31	1.21966378336455	0.0198613079244068	1.21966378336455	491.997840939022	0	8.01181501846116						147	9	3	NaN	NaN	NaN	3.4747E-05	1	30363	62.454	60.866	1	33338			5197	3474	4432	4536	5197	5197		
ESEVLIGNLGDK	12	Unmodified	_ESEVLIGNLGDK_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.33535	1272.65615	1.9269	0.0012281	-2.3637	-0.0015065	-0.43682	-0.0002784	637.334495207281	9.8332	0.20393	9.8332	9.6824	9.8864	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	394.865537448422	0	8.17874985911641						184	24	2	NaN	NaN	NaN	0.062409	1	11575	26.579	13.305	1	50468			5198	2471	4433	4537	5198	5198		
ESFDGSVR	8	Unmodified	_ESFDGSVR_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.709057	895.40356	0.582	0.00026115	1.067	0.00047879	1.649	0.00073994	448.709770645383	3.7849	0.21282	3.7849	3.7406	3.9534	0	789	37	0.794378096728713	0.0245420354301715	0.794378096728713	323.074257336905	0	9.98126698456349						500	25	3	NaN	NaN	NaN	0.00057421	1	2251	85.813	65.154	1	231800			5199	764	4434	4538	5199	5199		
ESFESQFLADTER	13	Unmodified	_ESFESQFLADTER_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.854635	1557.69472	2.4877	0.00194	-1.3953	-0.0010881	1.0923	0.00085187	779.853587173529	12.919	0.14188	12.919	12.875	13.017	0	429	28	1.03776581230406	0.0181041477634616	1.03776581230406	419.338980608638	0	7.31549910192433						288	17	4	NaN	NaN	NaN	7.7007E-05	1	20277	110.52	98.564	1	77439			5200	1694	4435	4539	5200	5200		
ESFLVTGSQDCTVK	14	Unmodified	_ESFLVTGSQDCTVK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.874513	1569.73447	2.1268	0.0016714	0.27753	0.0002181	2.4044	0.0018895	785.87480375756	8.6623	0.19529	8.6623	8.5914	8.7866	0	420	40	1.04379886199097	0.0261396123563653	1.04379886199097	421.748297640907	0	10.5617446174085						473	23	3	NaN	NaN	NaN	0.00032439	1	20650	88.24	71.248	1	135080			5201	1594	4436	4540	5201	5201		
ESFNPESYELDK	12	Unmodified	_ESFNPESYELDK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.325179	1456.6358	1.3164	0.00096008	0.54721	0.00039909	1.8636	0.0013592	729.325844484004	9.9662	0.23053	9.9662	9.8598	10.09	0	489	49	0.997481546940468	0.03226750840465	0.997481546940468	403.307239416423	0	13.0465769291092						581	27	4	NaN	NaN	NaN	0.00019305	1	17141	79.889	68.529	1	188790			5202	1154	4437	4541	5202	5202		
ESFSLVQVQPGVDIIR	16	Unmodified	_ESFSLVQVQPGVDIIR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.988526	1785.9625	1.5004	0.0013414	0.56074	0.00050129	2.0612	0.0018427	893.990841349989	15.961	0.13301	15.961	15.908	16.041	0	294	61	1.12800004657306	0.0399634543000309	1.12800004657306	455.287052515593	0	16.1301795792294						550	16	4	NaN	NaN	NaN	9.9166E-05	1	26866	93.162	85.605	1	136630			5203	1081	4438	4542	5203	5203		
ESGATIPSFMNIIPTK	16	Unmodified	_ESGATIPSFMNIIPTK_			0	0	0	Q9Y487	Q9Y487	Q9Y487	ATP6V0A2	V-type proton ATPase 116 kDa subunit a isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.445105	1704.87566	1.3151	0.0011223	1.4583	0.0012446	2.7734	0.002367	853.948571898667	17.211	0.14186	17.211	17.114	17.255	0	342	43	1.09598084995137	0.0280515443878693	1.09598084995137	442.525413376089	0	11.3264034464019						247	17	2	NaN	NaN	NaN	0.062733	1	24635	31.04	25.342	1	64696			5204	3405	4439	4543	5204	5204		
ESGHSNWLGDPEEPLTGFSWR	21	Unmodified	_ESGHSNWLGDPEEPLTGFSWR_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.032972	2400.07709	0.26651	0.00021348	-0.98291	-0.00078734	-0.7164	-0.00057386	801.366473839856	15.854	0.14189	15.854	15.783	15.925	0	600	82	0.922661313351899	0.05474995317825	0.922661313351899	557.507398189704	0	33.0820242549531						930	17	5	NaN	NaN	NaN	2.4286E-16	1	36345	159.83	158.1	1	301560			5205	2029	4440	4544	5205	5205		
ESGLQAAHPNSIFLIDHAWTCR	22	Unmodified	_ESGLQAAHPNSIFLIDHAWTCR_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.744768	2522.21248	2.327	0.0019587	-0.59521	-0.00050102	1.7318	0.0014577	842.079196720706	13.54	0.097536	13.54	13.504	13.602	0	369	37	1.07793901817685	0.024074020010092	1.07793901817685	651.15062511977	0	14.5423933213126						261	12	5	NaN	NaN	NaN	0.0003197	1	36930	39.48	39.175	1	56337			5206	1733	4441	4545	5206	5206		
ESGMNLNPEVEGTLIR	16	Unmodified	_ESGMNLNPEVEGTLIR_			0	0	0	Q96E11	Q96E11	Q96E11	MRRF	Ribosome-recycling factor, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.938176	1757.8618	2.9189	0.0025685	0.12637	0.0001112	3.0453	0.0026797	879.938458338409	12.963	0.21281	12.963	12.884	13.096	0	312	55	1.11600111266355	0.0360166400343891	1.11600111266355	450.499476915367	0	14.5389438340399						693	25	4	NaN	NaN	NaN	3.7812E-10	1	26088	139.7	133.33	1	242870			5207	2508	4442	4546	5207	5207		
ESGMSSLYVFNPIFGK	16	Unmodified	_ESGMSSLYVFNPIFGK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.43728	1774.86001	1.5669	0.0013921	0.6627	0.00058877	2.2296	0.0019808	888.939725210298	18.275	0.133	18.275	18.222	18.355	0	309	43	1.11800162319566	0.0280052262882846	1.11800162319566	451.273202675872	0	11.3041053756725						446	16	5	NaN	NaN	NaN	2.008E-06	1	26542	85.821	80.433	1	144460			5208	2268	4443	4547	5208	5208		
ESGMSSLYVFNPIFGK	16	Oxidation (M)	_ESGM(Oxidation (M))SSLYVFNPIFGK_	ESGM(1)SSLYVFNPIFGK	ESGM(57)SSLYVFNPIFGK	0	1	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.434738	1790.85492	0.90502	0.00081129	-0.72789	-0.0006525	0.17713	0.00015878	897.435443123608	16.714	0.1419	16.714	16.644	16.785	0	303	37	1.12200181823275	0.0240011742014585	1.12200181823275	452.856500817193	0	9.6872282983428						432	17	5	NaN	NaN	NaN	0.00070873	1	26990	57.003	53.267	1	94883			5209	2268	4443	4548	5209	5209	591	
ESGPSGIETELR	12	Unmodified	_ESGPSGIETELR_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.814781	1273.61501	1.4962	0.00095428	-3.8385	-0.0024482	-2.3423	-0.0014939	637.811370361336	7.5536	0.34591	7.5536	7.3496	7.6956	0	549	97	0.957085760909907	0.0647138427004055	0.957085760909907	387.496952806984	0	26.2008044367907						1173	40	4	NaN	NaN	NaN	0.00031628	1	11585	92.445	0	1	461430			5210	2329	4444	4549	5210	5210		
ESGSLSPEHGPVVVHCSAGIGR	22	Unmodified	_ESGSLSPEHGPVVVHCSAGIGR_			0	0	0	P18031	P18031	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.699048	2231.07531	1.578	0.0011752	-1.8974	-0.001413	-0.3194	-0.00023786	745.032519932585	6.4806	0.088673	6.4806	6.4363	6.5249	0	471	28	1.00957851518677	0.0181391858417761	1.00957851518677	610.291924643357	0	10.965168604834						248	11	4	NaN	NaN	NaN	0.037823	1	34999	7.749	6.161	1	48519			5211	748	4445	4550	5211	5211		
ESGVDIAAGNMLVK	14	Unmodified	_ESGVDIAAGNMLVK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.363584	1402.71262	1.353	0.00095032	-7.323	-0.0051434	-5.9699	-0.0041931	702.359613987902	11.509	0.23951	11.509	11.42	11.66	0	483	82	1.00151498427745	0.0543950494149802	1.00151498427745	405.084517641771	0	22.0012607901863						1086	28	5	NaN	NaN	NaN	0.00030894	1	15546	72.922	25.352	1	355390			5212	801	4446	4551	5212	5212		
ESGVFEGIPTYR	12	Unmodified	_ESGVFEGIPTYR_			0	0	0	Q8WTV0	Q8WTV0	Q8WTV0	SCARB1	Scavenger receptor class B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.835517	1353.65648	0.83766	0.00056779	2.325	0.001576	3.1626	0.0021438	677.837285268167	11.589	0.18628	11.589	11.518	11.704	0	519	73	0.97729762293174	0.0484481440475263	0.97729762293174	395.429053862902	0	19.6028347072578						477	22	4	NaN	NaN	NaN	3.6071E-05	1	14004	108.93	96.971	1	108930			5213	2362	4447	4552	5213	5213		
ESGVGQTDWSGVEAGEFLK	19	Unmodified	_ESGVGQTDWSGVEAGEFLK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.468352	1994.92215	1.9197	0.0019168	1.127	0.0011252	3.0467	0.003042	998.469795622029	14.498	0.079807	14.498	14.453	14.533	0	210	40	1.18386433251387	0.0258889011438428	1.18386433251387	477.449365532959	0	10.4409256077731						269	10	3	NaN	NaN	NaN	1.7037E-06	1	31537	98.895	97.185	1	66614			5214	2819	4448	4553	5214	5214		
ESGYCTGHEPDSLEFSTVGGWVSTR	25	Unmodified	_ESGYCTGHEPDSLEFSTVGGWVSTR_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	920.073168	2757.19767	1.2638	0.0011628	0.98255	0.00090402	2.2464	0.0020668	920.408349569368	13.744	0.088669	13.744	13.7	13.788	0	465	31	1.01360860968299	0.0201449080035752	1.01360860968299	612.004528538146	0	12.1632500033994						254	11	4	NaN	NaN	NaN	0.043695	1	37779	15.309	11.55	1	46418			5215	49	4449	4554	5215	5215		
ESGYNMIHFTPLQTLGLSR	19	Unmodified	_ESGYNMIHFTPLQTLGLSR_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.033368	2163.07827	-0.30931	-0.00022333	-2.2707	-0.0016395	-2.58	-0.0018629	722.365729763762	16.546	0.088675	16.546	16.502	16.59	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	550.501013521108	0	11.0419325305141						209	11	4	NaN	NaN	NaN	0.036604	1	34223	18.396	17.877	1	38409			5216	971	4450	4555	5216	5216		
ESHATLVFHNLLGEIDQQYSR	21	Unmodified	_ESHATLVFHNLLGEIDQQYSR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	615.059386	2456.20844	-0.74166	-0.00045616	-1.234	-0.00075898	-1.9757	-0.0012151	615.309087797009	15.615	0.079808	15.615	15.579	15.659	0	705	25	0.851531465363931	0.0162977768340994	0.851531465363931	685.945547087195	0	13.1285664728707						187	10	4	NaN	NaN	NaN	0.00036402	1	36600	49.967	43.58	1	48314			5217	1020	4451	4556	5217	5217		
ESHATLVFHNLLGEIDQQYSR	21	Unmodified	_ESHATLVFHNLLGEIDQQYSR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	819.743422	2456.20844	0.29724	0.00024366	-0.19451	-0.00015945	0.10272	8.4207E-05	820.07764835086	15.615	0.079808	15.615	15.579	15.659	0	552	25	0.955063035883597	0.0161829214477363	0.955063035883597	577.009866872261	0	9.77705659137314						205	10	4	NaN	NaN	NaN	0.0057699	1	36601	57.62	46.861	1	50302			5218	1020	4451	4556	5218	5218		
ESHLLNDEDLTQAK	14	Unmodified	_ESHLLNDEDLTQAK_			0	0	0	Q6WCQ1	Q6WCQ1	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.265286	1611.77403	-0.5487	-0.00029535	0.01568	8.44E-06	-0.53302	-0.00028691	538.265203924161	6.8707	0.070926	6.8707	6.8353	6.9062	0	753	16	0.81889964927511	0.0102080783980426	0.81889964927511	496.200360758989	0	6.1854369924917						66	9	2	NaN	NaN	NaN	0.0061445	1	21947	55.754	50.603	1	16357			5219	2091	4452	4557	5219	5219		
ESHTAVVYTEK	11	Unmodified	_ESHTAVVYTEK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.314417	1262.61428	1.9762	0.0012496	-3.2384	-0.0020477	-1.2622	-0.00079813	632.313273584076	2.836	0.10642	2.836	2.8094	2.9158	0	588	28	0.93076847747433	0.0182373300269247	0.93076847747433	376.877045608946	0	7.38446909911841						155	13	2	NaN	NaN	NaN	4.1934E-05	1	11291	99.34	90.867	1	31108			5220	1193	4453	4558	5220	5220		
ESIESEIR	8	Unmodified	_ESIESEIR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.743096	961.47164	0.51423	0.00024773	-0.59621	-0.00028722	-0.081977	-3.9492E-05	481.743787785114	5.7002	0.27491	5.7002	5.6203	5.8953	0	720	52	0.841341816837976	0.0346737156598015	0.841341816837976	341.8191384339	0	14.0871871288645						520	32	4	NaN	NaN	NaN	0.0015027	1	3471	75.243	30.477	1	132050			5221	1265	4454	4559	5221	5221		
ESLITLIEK	9	Unmodified	_ESLITLIEK_			0	0	0	O75976	O75976	O75976	CPD	Carboxypeptidase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.310615	1044.60668	-0.34056	-0.00017822	-2.735	-0.0014313	-3.0756	-0.0016095	523.309316706628	14.161	0.12415	14.161	14.116	14.24	0	675	22	0.871889544407995	0.0142417532513394	0.871889544407995	353.832324191377	0	5.77962275818209						148	15	3	NaN	NaN	NaN	0.063167	1	5353	26.947	15.587	1	37143			5222	376	4455	4560	5222	5222		
ESLQDTQPVGVLVDCCK	17	Unmodified	_ESLQDTQPVGVLVDCCK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.461158	1946.90776	2.2697	0.0022118	1.0695	0.0010422	3.3392	0.0032539	974.963219017174	11.58	0.29269	11.58	11.456	11.749	0	237	148	1.16593139812432	0.0976619651317983	1.16593139812432	470.297183923932	0	39.3935245691569						2544	34	6	NaN	NaN	NaN	0.00011595	1	30655	77.431	45.709	1	779940			5223	2841	4456	4561	5223	5223		
ESLVVNYEDLAAR	13	Unmodified	_ESLVVNYEDLAAR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.877913	1477.74127	1.6408	0.001214	2.1734	0.001608	3.8142	0.002822	739.87993554828	12.44	0.23939	12.44	12.352	12.591	0	405	73	1.05384839605172	0.0482610995013308	1.05384839605172	426.040526269714	0	19.5105712614217						1034	28	5	NaN	NaN	NaN	3.3883E-11	1	17826	157.77	104.72	1	656790			5224	1144	4457	4562	5224	5224		
ESLVYFLIGK	10	Unmodified	_ESLVYFLIGK_			0	0	0	P30260	P30260	P30260	CDC27	Cell division cycle protein 27 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.834257	1167.65396	-0.89089	-0.00052102	0.53293	0.00031168	-0.35796	-0.00020935	584.834326154014	18.222	0.097538	18.222	18.151	18.248	0	618	25	0.910492137470517	0.0162300673431094	0.910492137470517	368.991122139234	0	6.57748761891224						107	12	2	NaN	NaN	NaN	0.043684	1	8553	45.489	36.096	1	21614			5225	907	4458	4563	5225	5225		
ESLWPFLIDK	10	Unmodified	_ESLWPFLIDK_			0	0	0	Q9NZL9	Q9NZL9	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.337164	1246.65977	0.24623	0.00015373	-0.63286	-0.00039512	-0.38663	-0.00024139	624.336579359692	18.169	0.21279	18.169	18.107	18.319	0	582	52	0.934820374997243	0.0344292157937285	0.934820374997243	378.570088949577	0	13.9426478434794						640	25	4	NaN	NaN	NaN	3.5124E-06	1	10832	127.94	106.67	1	336630			5226	3135	4459	4564	5226	5226		
ESMATGSIPITVR	13	Unmodified	_ESMATGSIPITVR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.358302	1360.70205	1.0919	0.00074397	0.38258	0.00026067	1.4745	0.0010046	681.358804690707	10.232	0.13303	10.232	10.188	10.321	0	501	52	0.98941132619024	0.0343150509571248	0.98941132619024	400.309492343164	0	13.8836500702593						413	16	3	NaN	NaN	NaN	0.00027952	1	14231	83.775	74.798	1	166320			5227	1144	4460	4565	5227	5227		
ESNCYDPER	9	Unmodified	_ESNCYDPER_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.230027	1168.4455	1.1989	0.0007016	0.22223	0.00013005	1.4211	0.00083166	585.230165509435	2.8981	0.35468	2.8981	2.8183	3.173	0	684	46	0.86578508874114	0.0305180491511973	0.86578508874114	350.870120486344	0	12.367817050601						559	41	3	NaN	NaN	NaN	0.00088982	1	8557	93.467	90.869	1	137420			5228	1503	4461	4566	5228	5228		
ESNEEEQVWHFLGK	14	Unmodified	_ESNEEEQVWHFLGK_			0	0	0	Q9H2U2	Q9H2U2	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.937281	1730.79001	-0.86006	-0.00049706	-0.24108	-0.00013933	-1.1011	-0.00063639	577.9369704783	13.708	0.088676	13.708	13.682	13.77	0	684	25	0.86578508874114	0.0162842010813452	0.86578508874114	524.302788260547	0	9.86139879581299						195	11	4	NaN	NaN	NaN	9.5782E-05	1	25335	72.922	66.894	1	49456			5229	2874	4462	4567	5229	5229		
ESNEEEQVWHFLGK	14	Unmodified	_ESNEEEQVWHFLGK_			0	0	0	Q9H2U2	Q9H2U2	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.402283	1730.79001	1.9485	0.0016882	3.2681	0.0028315	5.2166	0.0045197	866.405116286756	13.708	0.15073	13.708	13.664	13.815	0	315	46	1.11400032671325	0.0300076659427861	1.11400032671325	449.74683897327	0	12.1147656594968						438	18	4	NaN	NaN	NaN	1.9303E-17	1	25339	220.25	207.08	1	126220			5230	2874	4462	4567	5230	5230		
ESPELLELIEDLK	13	Unmodified	_ESPELLELIEDLK_			0	0	0	Q9NQZ2	Q9NQZ2	Q9NQZ2	UTP3	Something about silencing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.411254	1526.80796	0.97135	0.00074251	-0.57559	-0.00043999	0.39576	0.00030252	764.410825903168	19.915	0.070929	19.915	19.898	19.969	0	399	43	1.0578662689527	0.0281251167294885	1.0578662689527	427.537321260972	0	11.3667837037493						194	9	4	NaN	NaN	NaN	8.6263E-17	1	19329	173.07	143.32	1	52490			5231	3007	4463	4568	5231	5231		
ESPESEGPIYEGLIL	15	Unmodified	_ESPESEGPIYEGLIL_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.903793	1631.79303	0.87766	0.00071697	0.42659	0.00034848	1.3042	0.0010654	817.405498166915	18.745	0.13301	18.745	18.692	18.825	0	453	85	1.02166545906632	0.0563124017776579	1.02166545906632	412.667957842772	0	22.7455314619767						581	16	4	NaN	NaN	NaN	3.928E-08	1	22544	114.39	111.29	1	153530			5232	2605	4464	4569	5232	5232		
ESPVEFTGHK	10	Unmodified	_ESPVEFTGHK_			0	0	0	Q5SY16	Q5SY16	Q5SY16	NOL9	Polynucleotide 5-hydroxyl-kinase NOL9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.77747	1129.54039	1.5234	0.0008619	-0.36249	-0.00020509	1.1609	0.00065681	565.777400295174	4.1662	0.133	4.1662	4.1219	4.2549	0	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	363.375285521281	0	6.58738167624097						136	16	3	NaN	NaN	NaN	0.033835	1	7508	25.857	15.769	1	27426			5233	1984	4465	4570	5233	5233		
ESPVFAPVYFPEELHR	16	Unmodified	_ESPVFAPVYFPEELHR_			0	0	0	P09601	P09601	P09601	HMOX1	Heme oxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.656226	1915.94685	0.62455	0.0003995	0.34258	0.00021913	0.96713	0.00061863	639.990421408342	14.95	0.12413	14.95	14.888	15.012	0	567	37	0.944945209309785	0.0242945584092671	0.944945209309785	571.801504304744	0	14.7010270097938						364	15	4	NaN	NaN	NaN	0.016109	1	29971	41.317	38.232	1	103690			5234	606	4466	4571	5234	5234		
ESPVFAPVYFPEELHR	16	Unmodified	_ESPVFAPVYFPEELHR_			0	0	0	P09601	P09601	P09601	HMOX1	Heme oxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.980701	1915.94685	1.1494	0.0011023	0.33932	0.0003254	1.4887	0.0014277	958.981342451043	14.967	0.062087	14.967	14.941	15.003	0	246	22	1.1599488233373	0.0139631798244857	1.1599488233373	467.937528013259	0	5.63291734843597						63	8	3	NaN	NaN	NaN	0.0066967	1	29973	39.702	35.72	1	10259			5235	606	4466	4571	5235	5235		
ESQDTSFTTLVER	13	Unmodified	_ESQDTSFTTLVER_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.86246	1511.71037	2.1299	0.001612	0.44968	0.00034034	2.5795	0.0019523	756.861702369226	10.525	0.23057	10.525	10.41	10.64	0	426	58	1.03977710643793	0.0382198802455282	1.03977710643793	420.264277527236	0	15.4479746275538						453	19	4	NaN	NaN	NaN	3.3094E-11	1	18853	150.44	108.65	1	239140			5236	1558	4467	4572	5236	5236		
ESQISAEIELLPTNDK	16	Unmodified	_ESQISAEIELLPTNDK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.957088	1785.89962	1.8784	0.0016792	2.6156	0.0023382	4.494	0.0040175	894.461011464777	13.682	0.15961	13.682	13.584	13.744	0	279	58	1.13799159301878	0.0379470051045476	1.13799159301878	459.319990338732	0	15.3162976993249						419	18	3	NaN	NaN	NaN	0.04799	1	26855	49.967	40.224	1	92634			5237	2499	4468	4573	5237	5237		
ESQLFDPSDLQDTSNR	16	Unmodified	_ESQLFDPSDLQDTSNR_			0	0	0	Q9UPQ0	Q9UPQ0	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.421401	1850.82825	1.7265	0.0015995	3.2034	0.0029677	4.9299	0.0045672	926.926104243035	11.607	0.19513	11.607	11.536	11.731	0	261	46	1.14997238118939	0.0299416813870632	1.14997238118939	464.030239564784	0	12.0818950213755						591	23	3	NaN	NaN	NaN	1.4534E-06	1	28508	79.235	66.653	1	148350			5238	3314	4469	4574	5238	5238		
ESQLLLNVVSQLAK	14	Unmodified	_ESQLLLNVVSQLAK_			0	0	0	O15091	O15091	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.448505	1540.88246	1.1148	0.00086003	-0.17466	-0.00013474	0.94017	0.00072529	771.448386193714	18.639	0.05319	18.639	18.612	18.665	0	357	25	1.08596037261705	0.0160382885112604	1.08596037261705	438.855547729409	0	6.48135242015275						108	7	3	NaN	NaN	NaN	0.030549	1	19754	21.361	12.1	1	22626			5239	143	4470	4575	5239	5239		
ESQSPDTTIQR	11	Unmodified	_ESQSPDTTIQR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.304581	1260.59461	2.5529	0.0016117	-2.2648	-0.0014298	0.28809	0.00018187	631.303588425779	3.1198	0.27483	3.1198	3.0755	3.3503	0	591	55	0.928742107665821	0.0364771975402507	0.928742107665821	376.063063237294	0	14.7702214985976						686	32	4	NaN	NaN	NaN	3.6241E-05	1	11222	102.55	49.955	1	267020			5240	2448	4471	4576	5240	5240		
ESQTQDNITVR	11	Unmodified	_ESQTQDNITVR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.817855	1289.62116	2.7083	0.001749	-2.1584	-0.0013939	0.54986	0.00035511	645.81627842358	3.7317	0.18618	3.7317	3.6785	3.8647	0	591	40	0.928742107665821	0.0263428128199913	0.928742107665821	375.971333836007	0	10.6640394477388						353	22	3	NaN	NaN	NaN	0.00046011	1	12050	108.93	96.862	1	92366			5241	2442	4472	4577	5241	5241		
ESQVSILQSLFGER	14	Unmodified	_ESQVSILQSLFGER_			0	0	0	O43913	O43913	O43913	ORC5	Origin recognition complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.917569	1591.82059	0.68248	0.00054388	-3.5011	-0.0027901	-2.8187	-0.0022462	797.416382782601	18.674	0.079806	18.674	18.639	18.718	0	396	34	1.05987478976334	0.0220937320698047	1.05987478976334	428.191850765761	0	8.92591852987169						165	10	3	NaN	NaN	NaN	9.0008E-05	1	21327	99.589	81.858	1	37361			5242	243	4473	4578	5242	5242		
ESSCLALNDLLR	12	Unmodified	_ESSCLALNDLLR_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.853383	1389.69221	1.2416	0.00086398	1.562	0.0010869	2.8036	0.0019509	695.854629626065	14.409	0.21279	14.409	14.329	14.542	0	477	46	1.0055473068722	0.0302361592844221	1.0055473068722	406.752640497132	0	12.2307896837654						310	25	2	NaN	NaN	NaN	0.0005032	1	15140	68.49	65.819	1	157910			5243	2013	4474	4579	5243	5243		
ESSEEEYDSGVEEEGWPR	18	Unmodified	_ESSEEEYDSGVEEEGWPR_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.42708	2112.8396	2.1334	0.0022559	-0.3204	-0.0003388	1.813	0.0019171	1057.92819473427	9.6204	0.16847	9.6204	9.5406	9.709	0	216	28	1.17988115188462	0.0179304709178465	1.17988115188462	475.659408831496	0	7.22852228229095						235	20	3	NaN	NaN	NaN	8.6504E-11	1	33496	100.69	100.13	1	40874			5244	379	4475	4580	5244	5244		
ESSETPDQFMTADETR	16	Unmodified	_ESSETPDQFMTADETR_			0	0	0	P16070	P16070	P16070	CD44	CD44 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.38617	1842.75779	3.087	0.0028474	-4.8251	-0.0044506	-1.7381	-0.0016032	923.380130895341	8.6357	0.26624	8.6357	8.547	8.8133	0	351	205	1.08996939197032	0.135951229983155	1.08996939197032	439.832533454059	0	54.8600486859498						1590	31	4	NaN	NaN	NaN	1.1206E-24	1	28293	209.7	207.86	1	663520			5245	721	4476	4581	5245	5245		
ESSETPDQFMTADETR	16	Oxidation (M)	_ESSETPDQFM(Oxidation (M))TADETR_	ESSETPDQFM(1)TADETR	ESSETPDQFM(66)TADETR	0	1	0	P16070	P16070	P16070	CD44	CD44 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.383627	1858.7527	2.3806	0.0022149	-5.4093	-0.0050327	-3.0287	-0.0028179	930.379644718817	5.8953	0.10653	5.8953	5.8598	5.9663	0	354	58	1.08796502040166	0.0380778290507997	1.08796502040166	438.99549097613	0	15.3644602041431						402	13	4	NaN	NaN	NaN	0.00048213	1	28663	66.485	62.981	1	87023			5246	721	4476	4582	5246	5246	242	
ESSLLVSELEDTTEK	15	Unmodified	_ESSLLVSELEDTTEK_			0	0	0	Q15058	Q15058	Q15058	KIF14	Kinesin-like protein KIF14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.414722	1678.81489	2.2729	0.0019102	-6.9776	-0.0058641	-4.7047	-0.0039539	840.408642633986	13.637	0.15074	13.637	13.549	13.7	0	339	70	1.09798411722691	0.0460942233022623	1.09798411722691	443.389797137873	0	18.6138469569448						465	18	3	NaN	NaN	NaN	0.0047385	1	23878	57.003	49.446	1	96023			5247	1805	4477	4583	5247	5247		
ESSLTEPVIVGLLK	14	Unmodified	_ESSLTEPVIVGLLK_			0	0	0	Q14738	Q14738	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.932157	1483.84976	-0.02029	-1.5074E-05	-0.46801	-0.0003477	-0.4883	-0.00036277	742.931551020608	16.785	0.17737	16.785	16.697	16.874	0	456	82	1.01965166402748	0.054327482891144	1.01965166402748	412.200040406797	0	21.9621969276026						681	21	4	NaN	NaN	NaN	6.6622E-08	1	18039	103.87	100.53	1	221740			5248	1772	4478	4584	5248	5248		
ESSQPDAFSSGGGSK	15	Unmodified	_ESSQPDAFSSGGGSK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.81551	1439.61647	2.2744	0.0016394	-1.8956	-0.0013664	0.37874	0.000273	720.814277856995	3.3503	0.23064	3.3503	3.3149	3.5455	0	543	37	0.961130371139249	0.024267665443817	0.961130371139249	388.652762201221	0	9.813127844181						268	27	2	NaN	NaN	NaN	0.067932	1	16651	25.588	23.451	1	62068			5249	978	4479	4585	5249	5249		
ESSSEQYVPDVFYK	14	Unmodified	_ESSSEQYVPDVFYK_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.385768	1676.75698	1.8681	0.001568	2.4791	0.0020809	4.3472	0.003649	839.388172204345	12.334	0.14185	12.334	12.281	12.423	0	372	43	1.07593298845566	0.0280824869885468	1.07593298845566	434.4894050251	0	11.3404303002107						444	17	4	NaN	NaN	NaN	9.0029E-06	1	23803	121.96	94.375	1	128040			5250	2334	4480	4586	5250	5250		
ESTGAQVQVAGDMLPNSTER	20	Unmodified	_ESTGAQVQVAGDMLPNSTER_			0	0	0	Q15365;Q15366;P57721	Q15365;Q15366;P57721	Q15365	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.49457	2088.9746	2.7893	0.0029162	-1.347	-0.0014083	1.4422	0.0015078	1045.99489039561	9.9307	0.45221	9.9307	9.8243	10.277	0	192	82	1.1958073123591	0.0537692917232429	1.1958073123591	482.115875848218	0	21.6782661428524						1903	52	6	NaN	NaN	NaN	3.4089E-47	1	33163	207.41	200.89	1	701350			5251	1833;1834;1295	4481	4587	5251	5251		
ESTGAQVQVAGDMLPNSTER	20	Unmodified	_ESTGAQVQVAGDMLPNSTER_			0	0	0	Q15365;Q15366;P57721	Q15365;Q15366;P57721	Q15365	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.332142	2088.9746	1.2934	0.00090195	0.62246	0.00043406	1.9159	0.001336	697.332681509718	9.9396	0.21278	9.9396	9.8066	10.019	0	537	106	0.965173861991602	0.0707954796920259	0.965173861991602	583.694567642759	0	42.8139825757718						958	25	3	NaN	NaN	NaN	1.0504E-05	1	33164	84.58	83.309	1	204570			5252	1833;1834;1295	4481	4587	5252	5252		
ESTGAQVQVAGDMLPNSTER	20	Oxidation (M)	_ESTGAQVQVAGDM(Oxidation (M))LPNSTER_	ESTGAQVQVAGDM(1)LPNSTER	ESTGAQVQVAGDM(140)LPNSTER	0	1	0	Q15365;Q15366;P57721	Q15365;Q15366;P57721	Q15365	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.49203	2104.96951	3.0044	0.0031651	-1.7399	-0.001833	1.2644	0.0013321	1053.99189402932	7.5181	0.1596	7.5181	7.4738	7.6334	0	195	88	1.19381749893585	0.0577522098474965	1.19381749893585	481.289487637471	0	23.2828983594308						911	19	5	NaN	NaN	NaN	9.2473E-16	1	33385	138.33	130.75	1	283890			5253	1833;1834;1295	4481	4588	5253	5253	456	
ESTLEAIGYICQDIDPEQLQDK	22	Unmodified	_ESTLEAIGYICQDIDPEQLQDK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	855.739014	2564.19521	0.72583	0.00062112	-1.1728	-0.0010036	-0.44692	-0.00038245	856.072452952961	17.557	0.11528	17.557	17.504	17.619	0	531	34	0.969216233931596	0.0222284349441159	0.969216233931596	585.421927889937	0	13.4263261214409						406	14	5	NaN	NaN	NaN	1.0865E-11	1	37083	119.58	115.82	1	90746			5254	1780	4482	4589	5254	5254		
ESTLEAIGYICQDIDPEQLQDK	22	Unmodified	_ESTLEAIGYICQDIDPEQLQDK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1283.10488	2564.19521	0.51047	0.00065498	-0.10731	-0.00013768	0.40316	0.0005173	1283.6071273274	17.557	0.079818	17.557	17.513	17.592	0	66	40	1.27913350869533	0.0257296295668654	1.27913350869533	515.07899580687	0	10.3607572389384						213	10	3	NaN	NaN	NaN	0.033239	1	37084	25.185	24.99	1	37443			5255	1780	4482	4589	5255	5255		
ESTLHLVLR	9	Unmodified	_ESTLHLVLR_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.314023	1066.61349	1.7049	0.00091096	-0.16993	-9.0798E-05	1.535	0.00082017	534.313521656253	8.1479	0.40798	8.1479	8.0947	8.5027	0	630	91	0.902373728295776	0.0609050221573664	0.902373728295776	366.105169738183	0	24.7099874205578						2024	47	5	NaN	NaN	NaN	4.1506E-06	1	5888	164.53	117.18	1	7023900			5256	1419	4483	4590	5256	5256		
ESTQLSPADLTEGK	14	Unmodified	_ESTQLSPADLTEGK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.364835	1474.71512	1.6333	0.001206	0.54912	0.00040545	2.1824	0.0016114	738.366183397349	8.6002	0.23953	8.6002	8.4672	8.7068	0	432	40	1.035754240522	0.0261612711685622	1.035754240522	418.733558187534	0	10.5764492526723						289	28	2	NaN	NaN	NaN	0.0095192	1	17731	52.837	49.959	1	94598			5257	1581	4484	4591	5257	5257		
ESTQLSPADLTEGKPTDPSK	20	Unmodified	_ESTQLSPADLTEGKPTDPSK_			0	0	1	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.014696	2100.02226	1.5132	0.0010607	0.40004	0.00028043	1.9132	0.0013412	701.349218067323	7.8995	0.21284	7.8995	7.7931	8.0059	-8.8818E-16	591	70	0.928742107665821	0.0466194521646726	0.928742107665821	561.64275677322	0	28.1924092995309						1110	25	4	NaN	NaN	NaN	2.3794E-07	1	33313	77.347	62.954	1	293140			5258	1581	4485	4592	5258	5258		
ESTSYIEEHIDR	12	Unmodified	_ESTSYIEEHIDR_			0	0	0	Q9H267	Q9H267	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.841527	1477.6685	1.726	0.001277	0.10281	7.6066E-05	1.8289	0.0013531	739.841132468293	6.3299	0.097525	6.3299	6.2944	6.3919	0	414	28	1.04781950764076	0.0180916587638704	1.04781950764076	423.603422164019	0	7.31393957558066						193	12	3	NaN	NaN	NaN	0.00059031	1	17810	99.174	73.318	1	48333			5259	2861	4486	4593	5259	5259		
ESTTTPGQYVLTGLQSGQPK	20	Unmodified	_ESTTTPGQYVLTGLQSGQPK_			0	0	0	P29353	P29353	P29353	SHC1	SHC-transforming protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.53148	2091.04841	1.8077	0.0018919	-1.2559	-0.0013144	0.55181	0.00057749	1047.03202549821	12.29	0.11529	12.29	12.227	12.343	0	168	52	1.21171599086077	0.0337665467151151	1.21171599086077	488.526607763964	0	13.6136327712572						477	14	3	NaN	NaN	NaN	2.1182E-06	1	33200	86.952	77.821	1	100860			5260	885	4487	4594	5260	5260		
ESTVQGAYGSEDMK	14	Unmodified	_ESTVQGAYGSEDMK_			0	0	0	P29083	P29083	P29083	GTF2E1	General transcription factor IIE subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.327395	1500.64024	2.013	0.0015124	0.3839	0.00028843	2.3969	0.0018009	751.327563712925	4.8578	0.070941	4.8578	4.8401	4.911	0	447	28	1.02569221487577	0.0181216541002778	1.02569221487577	414.599095402848	0	7.32502527387163						122	9	3	NaN	NaN	NaN	0.0011975	1	18534	51.454	37.459	1	23694			5261	881	4488	4595	5261	5261		
ESTYQGHHTPPVQK	14	Unmodified	_ESTYQGHHTPPVQK_			0	0	0	P00414	P00414	P00414	MT-CO3	Cytochrome c oxidase subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.930349	1607.76922	-0.078248	-4.2014E-05	0.70065	0.0003762	0.62241	0.00033419	536.930540199722	2.2064	0.10641	2.2064	2.1798	2.2862	0	831	19	0.76571780291124	0.0122949627621918	0.76571780291124	463.985425046206	0	7.45011217115984						133	13	3	NaN	NaN	NaN	0.0019202	1	21847	62.705	50.109	1	26562			5262	478	4489	4596	5262	5262		
ESVDGQWVCISDVNK	15	Unmodified	_ESVDGQWVCISDVNK_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.401426	1734.7883	2.8007	0.0024322	-6.7097	-0.0058267	-3.909	-0.0033946	868.395531322354	11.403	0.26609	11.403	11.27	11.536	0	351	43	1.08996939197032	0.0280592752418065	1.08996939197032	440.03698985874	0	11.3279502213385						869	31	5	NaN	NaN	NaN	2.9666E-12	1	25458	172.92	167.22	1	368340			5263	1275	4490	4597	5263	5263		
ESVLQFYPK	9	Unmodified	_ESVLQFYPK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.795132	1109.57571	0.75374	0.00041892	3.3966	0.0018878	4.1503	0.0023067	556.298993498536	11.252	0.18622	11.252	11.154	11.341	0	612	64	0.914549654013882	0.0426009931647262	0.914549654013882	370.861881321348	0	17.2752615474594						618	22	3	NaN	NaN	NaN	0.016007	1	6980	34.931	12.545	1	173700			5264	3188	4491	4598	5264	5264		
ESVLQMMQAGQR	12	Unmodified	_ESVLQMMQAGQR_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.334304	1376.65405	0.23012	0.00015863	-0.1451	-0.00010002	0.085021	5.8608E-05	689.334131679095	12.05	0.11529	12.05	12.006	12.121	0	531	22	0.969216233931596	0.0141473237574097	0.969216233931596	392.092989599007	0	5.72324964509346						133	14	3	NaN	NaN	NaN	0.0083615	1	14694	44.82	36.347	1	26044			5265	990	4492	4599	5265	5265		
ESVLTATSILNNPIVK	16	Unmodified	_ESVLTATSILNNPIVK_			0	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.985452	1697.95635	1.562	0.0013277	0.043398	3.6887E-05	1.6054	0.0013646	849.985138316161	16.076	0.10642	16.076	16.032	16.138	0	297	58	1.12600091227925	0.0379626683497278	1.12600091227925	454.66159263124	0	15.3287329203676						531	13	4	NaN	NaN	NaN	1.765E-08	1	24447	105.94	87.436	1	144670			5266	1960	4493	4600	5266	5266		
ESVLTWLLK	9	Unmodified	_ESVLTWLLK_			0	0	0	Q15058	Q15058	Q15058	KIF14	Kinesin-like protein KIF14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.82115	1087.62775	-0.80417	-0.00043813	-0.86181	-0.00046953	-1.666	-0.00090766	544.820812775753	18.408	0.070921	18.408	18.381	18.452	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	351.174135643572	0	6.60417500527979						116	9	3	NaN	NaN	NaN	0.0012078	1	6420	65.156	38.7	1	26606			5267	1805	4494	4601	5267	5267		
ESWLLPGSNDLLLEVGPR	18	Unmodified	_ESWLLPGSNDLLLEVGPR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.030922	1994.04729	0.53698	0.00053593	0.46187	0.00046096	0.99886	0.00099689	998.532705309858	19.295	0.079791	19.295	19.259	19.339	0	156	67	1.21966378336455	0.0437308796161957	1.21966378336455	491.888683233047	0	17.6366020574081						421	10	4	NaN	NaN	NaN	1.06E-06	1	31530	76.196	67.39	1	119890			5268	141	4495	4602	5268	5268		
ESYDDVSSFR	10	Unmodified	_ESYDDVSSFR_			0	0	0	Q99848	Q99848	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.759475	1203.5044	1.2586	0.00075863	0.13427	8.0935E-05	1.3929	0.00083956	602.759624682811	7.3496	0.16846	7.3496	7.3053	7.4738	0	612	43	0.914549654013882	0.0283947491785544	0.914549654013882	370.506570629807	0	11.5034116473244						394	20	4	NaN	NaN	NaN	0.0048669	1	9560	63.397	52.037	1	205140			5269	2680	4496	4603	5269	5269		
ESYEVSLTQK	10	Unmodified	_ESYEVSLTQK_			0	0	0	Q9NX40	Q9NX40	Q9NX40	OCIAD1	OCIA domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.295693	1182.57683	1.195	0.0007078	1.9488	0.0011543	3.1439	0.0018621	592.29658298872	6.6136	0.27488	6.6136	6.5161	6.7909	0	609	52	0.916577990479294	0.0344721745325131	0.916577990479294	371.402773602379	0	13.9683271543382						504	32	3	NaN	NaN	NaN	0.00064025	1	8938	74.269	46.173	1	129080			5270	3094	4497	4604	5270	5270		
ESYPVFYLFR	10	Unmodified	_ESYPVFYLFR_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.834788	1319.65502	0.3583	0.00023677	-0.056683	-3.7458E-05	0.30161	0.00019932	660.834494759812	18.018	0.44331	18.018	17.796	18.24	0	552	97	0.955063035883597	0.0646780299833856	0.955063035883597	386.533242305583	0	26.1765011272646						2458	51	4	NaN	NaN	NaN	3.6527E-05	1	12961	125.5	110.74	1	1045900			5271	892	4498	4605	5271	5271		
ESYSIYVYK	9	Unmodified	_ESYSIYVYK_			0	0	0	P33778;Q16778;P23527;P06899;Q8N257;Q6DRA6;Q6DN03	P33778	P33778	HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB;HIST2H2BD;HIST2H2BC	Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B;Putative histone H2B type 2-D;Putative histone H2B type 2-C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.284597	1150.55464	1.3735	0.00079151	0.77791	0.0004483	2.1514	0.0012398	576.285001649914	9.0085	0.38144	9.0085	8.8842	9.2656	0	576	82	0.938871150116794	0.0547271961107838	0.938871150116794	380.558168635941	0	22.182896475101						1133	44	5	NaN	NaN	NaN	0.004796	1	8077	53.878	42.518	1	896440			5272	550	4499	4606	5272	5272		
ESYSVYVYK	9	Unmodified	_ESYSVYVYK_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053	Q99880	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.276772	1136.53899	2.4509	0.0013953	0.88156	0.00050185	3.3325	0.0018971	569.27717786321	7.7842	0.42586	7.7842	7.6688	8.0947	0	588	61	0.93076847747433	0.0405302231848498	0.93076847747433	377.328960667167	0	16.4307530390869						1578	49	5	NaN	NaN	NaN	0.0015478	1	7703	62.88	52.052	1	2754300			5273	283	4500	4607	5273	5273		
ESYVETELIFALAK	14	Unmodified	_ESYVETELIFALAK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.927071	1611.83959	1.8015	0.0014537	0.18359	0.00014814	1.9851	0.0016018	806.927036614927	18.444	0.14193	18.444	18.399	18.541	0	282	34	1.13599383354359	0.0219783806996243	1.13599383354359	458.894936306809	0	8.87836475293147						324	17	4	NaN	NaN	NaN	5.5873E-17	1	21956	164.31	157.56	1	114030			5274	1503	4501	4608	5274	5274		
ESYVNLCSNPEDK	13	Unmodified	_ESYVNLCSNPEDK_			0	0	0	Q93034	Q93034	Q93034	CUL5	Cullin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.84067	1553.66679	1.9536	0.0015196	0.98416	0.00076552	2.9378	0.0022851	778.343206678906	7.1634	0.11525	7.1634	7.1014	7.2166	0	423	28	1.04178812298108	0.0180966528124649	1.04178812298108	420.973916819637	0	7.31263742380645						192	14	3	NaN	NaN	NaN	0.0036566	1	20163	50.116	42.115	1	41356			5275	2453	4502	4609	5275	5275		
ETAAVIFLHGLGDTGHSWADALSTIR	26	Unmodified	_ETAAVIFLHGLGDTGHSWADALSTIR_			0	0	0	O95372	O95372	O95372	LYPLA2	Acyl-protein thioesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	913.468069	2737.38238	0.94666	0.00086475	1.0375	0.00094772	1.9842	0.0018125	913.803170349984	19.038	0.053229	19.038	19.011	19.064	0	357	28	1.08596037261705	0.0180443182324475	1.08596037261705	655.713458030517	0	10.8953352298553						169	7	4	NaN	NaN	NaN	3.9864E-06	1	37719	53.782	53.458	1	35428			5276	428	4503	4610	5276	5276		
ETADITHALSK	11	Unmodified	_ETADITHALSK_			0	0	0	Q15042	Q15042	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.309135	1184.60372	1.3808	0.00081926	-5.811	-0.0034477	-4.4301	-0.0026284	593.305539325635	5.5051	0.1596	5.5051	5.443	5.6026	0	567	46	0.944945209309785	0.0303829256271585	0.944945209309785	382.889816438841	0	12.3110977246554						365	19	4	NaN	NaN	NaN	0.033566	1	8995	45.939	33.982	1	74576			5277	1799	4504	4611	5277	5277		
ETADTDTADQVMASFK	16	Unmodified	_ETADTDTADQVMASFK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.382899	1728.75125	2.4054	0.0020816	0.94026	0.00081369	3.3457	0.0028953	865.383893618611	12.192	0.15078	12.192	12.157	12.307	0	330	49	1.10399226369747	0.0320412505786125	1.10399226369747	445.710544779747	0	12.9358906945486						612	18	5	NaN	NaN	NaN	1.8183E-25	1	25284	206.7	200.67	1	239620			5278	671	4505	4612	5278	5278		
ETAEAYLGK	9	Unmodified	_ETAEAYLGK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.248015	980.481476	0.84702	0.0004161	0.050833	2.4971E-05	0.89786	0.00044107	491.248534919982	5.1681	0.28376	5.1681	5.0972	5.381	0	711	94	0.847456455381371	0.0631758922068985	0.847456455381371	344.209259729118	0	25.6599934441199						1226	33	3	NaN	NaN	NaN	0.010244	1	3852	51.864	32.608	1	495730			5279	638	4506	4613	5279	5279		
ETAENYLGHTAK	12	Unmodified	_ETAENYLGHTAK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.322773	1332.63099	2.8485	0.0019009	-0.27908	-0.00018624	2.5694	0.0017146	667.322832816679	4.1396	0.39893	4.1396	4.0953	4.4943	0	489	82	0.997481546940468	0.054500403707241	0.997481546940468	403.660134580505	0	22.0551852439128						1455	46	5	NaN	NaN	NaN	2.6548E-17	1	13370	183.57	162.29	1	1240500			5280	1007	4507	4614	5280	5280		
ETAHSVLGSDANDVVITVPFDFGEK	25	Unmodified	_ETAHSVLGSDANDVVITVPFDFGEK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.101052	2646.28133	0.26261	0.00023191	0.118	0.00010421	0.38061	0.00033612	883.435679919847	16.98	0.070938	16.98	16.945	17.016	0	483	40	1.00151498427745	0.0262119132032216	1.00151498427745	604.82971225203	0	15.8297620796133						209	9	3	NaN	NaN	NaN	1.5759E-06	1	37419	86.766	82.608	1	43436			5281	1585	4508	4615	5281	5281		
ETAIELGYLTAEQFDEWVK	19	Unmodified	_ETAIELGYLTAEQFDEWVK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.54934	2241.08413	0.4883	0.00054765	1.8852	0.0021143	2.3735	0.002662	1122.05233953525	20.04	0.04434	20.04	20.031	20.075	0	69	58	1.27715511956461	0.0376203035311353	1.27715511956461	514.682155893501	0	15.1606477789272						137	6	2	NaN	NaN	NaN	1.9518E-10	1	35109	106.97	100.12	1	62015			5282	571	4509	4616	5282	5282		
ETAVPGPLGIEDISPNLSPDDK	22	Unmodified	_ETAVPGPLGIEDISPNLSPDDK_			0	0	0	Q12888	Q12888	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1132.56826	2263.12197	0.70154	0.00079454	1.6213	0.0018362	2.3228	0.0026307	1133.07247975143	15.606	0.22167	15.606	15.544	15.766	-1.7764E-15	72	40	1.27517645957152	0.0257296295668654	1.27517645957152	513.853938916871	0	10.3681897517528						369	26	3	NaN	NaN	NaN	4.2627E-06	1	35303	82.822	55.355	1	85574			5283	1602	4510	4617	5283	5283		
ETCAWFTDNYEQAR	14	Unmodified	_ETCAWFTDNYEQAR_			0	0	0	Q13630	Q13630	Q13630	TSTA3	GDP-L-fucose synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.875575	1789.7366	2.483	0.0022245	-0.16537	-0.00014815	2.3176	0.0020763	895.87528569186	11.146	0.11527	11.146	11.092	11.208	0	324	46	1.1079963157843	0.0300324663961253	1.1079963157843	447.205818375003	0	12.1216050280746						414	14	4	NaN	NaN	NaN	8.5309E-06	1	26954	122.51	79.34	1	128830			5284	1697	4511	4618	5284	5284		
ETCSLWPGQALSLQVEQLLHHR	22	Unmodified	_ETCSLWPGQALSLQVEQLLHHR_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	651.335324	2601.31219	-0.41059	-0.00026743	0.19724	0.00012847	-0.21335	-0.00013897	651.586680312221	18.781	0.16848	18.781	18.683	18.851	0	636	34	0.898312834727904	0.0223395647977513	0.898312834727904	723.403061338126	0	17.9898460078773						440	20	4	NaN	NaN	NaN	0.00045483	1	37248	53.773	51.587	1	83552			5285	771	4512	4619	5285	5285		
ETCSLWPGQALSLQVEQLLHHR	22	Unmodified	_ETCSLWPGQALSLQVEQLLHHR_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	868.11134	2601.31219	0.79526	0.00069038	0.33194	0.00028816	1.1272	0.00097854	868.445572229941	18.789	0.10642	18.789	18.727	18.834	0	399	16	1.0578662689527	0.0100439897104967	1.0578662689527	638.918794449522	0	6.06626185713185						141	13	3	NaN	NaN	NaN	0.046756	1	37249	15.548	14.737	1	26472			5286	771	4512	4619	5286	5286		
ETCSTLAESPR	11	Unmodified	_ETCSTLAESPR_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.787709	1249.56087	2.1119	0.0013216	2.0785	0.0013007	4.1904	0.0026223	625.788449307895	3.6519	0.21277	3.6519	3.5633	3.776	0	582	34	0.934820374997243	0.0222869832094168	0.934820374997243	378.560450347735	0	9.02523161272995						303	25	3	NaN	NaN	NaN	0.060677	1	10900	18.507	16.348	1	51296			5287	2063	4513	4620	5287	5287		
ETDAHLANPVLPDEVLQEAVPGSIR	25	Unmodified	_ETDAHLANPVLPDEVLQEAVPGSIR_			0	0	0	P18074	P18074	P18074	ERCC2	TFIIH basal transcription factor complex helicase XPD subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	890.795963	2669.36606	1.1476	0.0010223	-0.54683	-0.00048711	0.60078	0.00053517	891.463649211683	16.058	0.035475	16.058	16.041	16.076	0	423	16	1.04178812298108	0.0100536953366968	1.04178812298108	629.122825322138	0	6.07130094462184						58	5	3	NaN	NaN	NaN	0.017775	1	37509	15.507	14.41	1	9549.4			5288	749	4514	4621	5288	5288		
ETDCGVHINAGPEIGVASTK	20	Unmodified	_ETDCGVHINAGPEIGVASTK_			0	0	0	Q06210;O94808	Q06210	Q06210	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.665233	2053.97387	0.71867	0.00049277	0.47783	0.00032763	1.1965	0.0008204	685.999988178918	8.5648	0.15959	8.5648	8.5205	8.68	0	639	37	0.896281965493857	0.0243755060720344	0.896281965493857	542.092720202883	0	14.7428877313515						504	19	5	NaN	NaN	NaN	4.4883E-06	1	32591	81.409	78.694	1	181920			5289	1558	4515	4622	5289	5289		
ETDDTLVLSFVGQTR	15	Unmodified	_ETDDTLVLSFVGQTR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.925591	1679.83663	1.3529	0.0011377	0.98971	0.00083227	2.3427	0.00197	840.926575709161	15.881	0.13303	15.881	15.819	15.952	0	351	37	1.08996939197032	0.0240541201161169	1.08996939197032	440.151056782465	0	9.71352633117743						246	16	3	NaN	NaN	NaN	0.028747	1	23907	40.861	36.044	1	59988			5290	1884	4516	4623	5290	5290		
ETDLLLDDSLVSIFGNR	17	Unmodified	_ETDLLLDDSLVSIFGNR_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.330067	1905.96837	0.19863	0.00012639	-1.4067	-0.00089515	-1.2081	-0.00076875	636.663412255422	19.986	0.026624	19.986	19.978	20.004	0	534	25	0.967195187796614	0.0161717265136965	0.967195187796614	585.287338524447	0	9.78613923018929						107	4	5	NaN	NaN	NaN	0.017024	1	29724	40.861	40.294	1	32692			5291	895	4517	4624	5291	5291		
ETDLLLDDSLVSIFGNR	17	Unmodified	_ETDLLLDDSLVSIFGNR_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.991463	1905.96837	1.5147	0.001445	0.064131	6.1181E-05	1.5788	0.0015062	954.49334480588	19.986	0.19509	19.986	19.933	20.128	0	210	61	1.18386433251387	0.039842769151154	1.18386433251387	477.603315146662	0	16.0736649534894						594	23	7	NaN	NaN	NaN	1.031E-34	1	29725	208.35	161.99	1	331670			5292	895	4517	4624	5292	5292		
ETDLQELFRPFGSISR	16	Unmodified	_ETDLQELFRPFGSISR_			0	0	1	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.326769	1893.95848	-1.2862	-0.00081331	0.13195	8.3433E-05	-1.1543	-0.00072988	632.326499321916	17.087	0.16846	17.087	17.025	17.193	0	732	76	0.833184998970724	0.0509341248195246	0.833184998970724	504.21564934035	0	30.8236260268548						699	20	5	NaN	NaN	NaN	9.1227E-09	1	29474	163.93	141.04	1	354250			5293	362	4518	4625	5293	5293		
ETDVVNFDDIASSENLLHLTANRPK	25	Unmodified	_ETDVVNFDDIASSENLLHLTANRPK_			0	0	1	Q9Y5K6	Q9Y5K6	Q9Y5K6	CD2AP	CD2-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	700.354339	2797.38825	-0.046499	-3.2566E-05	0.8733	0.00061162	0.82681	0.00057906	700.605705607295	15.642	0.062057	15.642	15.615	15.677	-1.7764E-15	597	49	0.924688525662974	0.032415189981154	0.924688525662974	744.365890529737	0	26.0939344302047						229	8	4	NaN	NaN	NaN	0.00074972	1	37890	55.416	54.165	1	43308			5294	3435	4519	4626	5294	5294		
ETDYPAGEDLSESGQVDK	18	Unmodified	_ETDYPAGEDLSESGQVDK_			0	0	0	O60271	O60271	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.423807	1938.83306	2.5088	0.0024346	-0.23539	-0.00022843	2.2734	0.0022062	970.925414773083	7.1191	0.070951	7.1191	7.0747	7.1457	0	258	58	1.15196821829984	0.0379470051045476	1.15196821829984	464.678611607415	0	15.3069862228189						266	9	3	NaN	NaN	NaN	5.1082E-15	1	30480	164.56	161.67	1	45642			5295	252	4520	4627	5295	5295		
ETEGDVTSVK	10	Unmodified	_ETEGDVTSVK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.758943	1063.50333	1.8791	0.0010011	-0.0627	-3.3404E-05	1.8164	0.00096768	532.758534490026	2.9956	0.27487	2.9956	2.9336	3.2084	0	681	52	0.867820189810857	0.0346063393446338	0.867820189810857	352.099459571399	0	14.0407811710922						831	32	4	NaN	NaN	NaN	0.015211	1	5809	29.755	25.215	1	323100			5296	1174	4521	4628	5296	5296		
ETEGGTVLTATTSELEAINK	20	Unmodified	_ETEGGTVLTATTSELEAINK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.52078	2063.02701	1.8376	0.0018973	-6.328	-0.0065338	-4.4905	-0.0046365	1033.01435375373	15.074	0.23054	15.074	14.941	15.171	0	156	100	1.21966378336455	0.0656368902097588	1.21966378336455	491.774990349953	0	26.46514678042						979	27	4	NaN	NaN	NaN	7.6009E-29	1	32752	173.54	151.87	1	373820			5297	3321	4522	4629	5297	5297		
ETENDDLTNVIQK	13	Unmodified	_ETENDDLTNVIQK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.867742	1517.72093	2.3717	0.0018022	0.35777	0.00027186	2.7295	0.0020741	759.867957535748	8.3785	0.29267	8.3785	8.2898	8.5825	0	432	58	1.035754240522	0.0382409924539848	1.035754240522	418.623245737735	0	15.4559525368213						1062	34	6	NaN	NaN	NaN	1.1182E-11	1	19062	200.06	175.37	1	815140			5298	429	4523	4630	5298	5298		
ETENDDVTNVIQK	13	Unmodified	_ETENDDVTNVIQK_			0	0	0	O15397	O15397	O15397	IPO8	Importin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.859917	1503.70528	1.6853	0.0012688	-0.82794	-0.00062332	0.85736	0.00064547	752.858859718914	6.6491	0.17735	6.6491	6.6047	6.7821	0	447	37	1.02569221487577	0.0241605388886725	1.02569221487577	414.591377108855	0	9.76584490383402						318	21	4	NaN	NaN	NaN	3.7899E-11	1	18620	150.21	139.95	1	83307			5299	172	4524	4631	5299	5299		
ETETVFVPVIQAGMEALK	18	Unmodified	_ETETVFVPVIQAGMEALK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.516259	1961.01796	1.1528	0.0011315	0.041686	4.0915E-05	1.1945	0.0011724	981.517515784556	19.49	0.11523	19.49	19.419	19.534	0	195	64	1.19381749893585	0.0417746321757311	1.19381749893585	481.52097040865	0	16.8496118055339						475	14	3	NaN	NaN	NaN	0.0016745	1	30948	51.569	48.484	1	99549			5300	1247	4525	4632	5300	5300		
ETEVGDPAGNELAEPEAK	18	Unmodified	_ETEVGDPAGNELAEPEAK_			0	0	0	Q96G46	Q96G46	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.431435	1854.84832	2.7714	0.002573	-3.0996	-0.0028777	-0.32817	-0.00030468	928.430063178817	7.3496	0.070886	7.3496	7.3231	7.394	0	336	40	1.09998710857178	0.0260353063115875	1.09998710857178	443.85333451165	0	10.5054481378735						128	9	2	NaN	NaN	NaN	0.002447	1	28589	62.398	60.414	1	29503			5301	2535	4526	4633	5301	5301		
ETFASTASQLHSNVVNYVQQIVAPK	25	Unmodified	_ETFASTASQLHSNVVNYVQQIVAPK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	911.139841	2730.39769	0.59139	0.00053884	0.24819	0.00022613	0.83958	0.00076497	911.474358346293	17.956	0.17732	17.956	17.876	18.053	0	453	58	1.02166545906632	0.0382568380923556	1.02166545906632	616.899540364599	0	23.1001504705318						937	21	5	NaN	NaN	NaN	2.2431E-19	1	37694	134.13	133.17	1	235910			5302	2892	4527	4634	5302	5302		
ETFGVNNAVYGIDAMNPSSR	20	Unmodified	_ETFGVNNAVYGIDAMNPSSR_			0	0	0	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.49966	2140.98477	1.8612	0.0019943	-0.60891	-0.00065244	1.2523	0.0013418	1072.00126592023	14.036	0.19506	14.036	13.939	14.134	0	162	73	1.21569043230068	0.0476998736599445	1.21569043230068	490.053552649259	0	19.2281619784889						1050	23	5	NaN	NaN	NaN	3.1806E-06	1	33894	101.52	91.612	1	294700			5303	363	4528	4635	5303	5303		
ETFLTSPEELYR	12	Unmodified	_ETFLTSPEELYR_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.867014	1483.71947	1.6354	0.0012149	2.2066	0.0016392	3.8421	0.0028542	742.867739538417	13.017	0.33698	13.017	12.857	13.194	-1.7764E-15	435	103	1.03374239103424	0.0683793753034867	1.03374239103424	417.896626426036	0	27.6427768700263						2122	39	6	NaN	NaN	NaN	2.7666E-06	1	18023	148.9	139.39	1	822130			5304	434	4529	4636	5304	5304		
ETGANLAICQWGFDDEANHLLLQNNLPAVR	30	Unmodified	_ETGANLAICQWGFDDEANHLLLQNNLPAVR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1127.22112	3378.64152	1.8448	0.0020795	-0.33621	-0.00037899	1.5086	0.0017005	1127.88912331285	18.266	0.088658	18.266	18.231	18.319	0	318	127	1.11199926528787	0.0840505413027117	1.11199926528787	670.791503228812	0	50.7018221212998						963	11	6	NaN	NaN	NaN	1.7488E-06	1	38597	56.064	50.947	1	267240			5305	1113	4530	4637	5305	5305		
ETGDPGGQLVLAGDPR	16	Unmodified	_ETGDPGGQLVLAGDPR_			0	0	0	Q9HCE1	Q9HCE1	Q9HCE1	MOV10	Putative helicase MOV-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.397001	1580.77945	1.9332	0.00153	-2.3155	-0.0018325	-0.38223	-0.00030249	791.395055664653	8.9642	0.12415	8.9642	8.9198	9.044	0	426	46	1.03977710643793	0.030161093191106	1.03977710643793	420.09764241257	0	12.1858849014059						324	15	4	NaN	NaN	NaN	1.0203E-08	1	20998	128.46	117.67	1	91674			5306	2962	4531	4638	5306	5306		
ETGEHLVHVK	10	Unmodified	_ETGEHLVHVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.806562	1147.59857	1.7079	0.00098168	-1.0388	-0.0005971	0.66907	0.00038458	574.806161190024	2.57	0.17737	2.57	2.5434	2.7208	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	372.35536168569	0	8.2201183114376						242	21	3	NaN	NaN	NaN	0.0006356	1	8006	83.623	70.796	1	56954			5307	792	4532	4639	5307	5307		
ETGLMYSIMVHALR	14	Unmodified	_ETGLMYSIMVHALR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.946066	1619.81637	-0.33679	-0.00018218	-0.58887	-0.00031855	-0.92566	-0.00050073	541.280809198842	16.156	0.088682	16.156	16.12	16.209	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	533.215769816912	0	12.3197591567165						209	11	4	NaN	NaN	NaN	0.009776	1	22186	36.514	28.957	1	51634			5308	1465	4533	4640	5308	5308		
ETGLMYSIMVHALR	14	Unmodified	_ETGLMYSIMVHALR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.915461	1619.81637	1.7375	0.001409	1.0801	0.00087585	2.8176	0.0022848	810.915926720319	16.156	0.070955	16.156	16.129	16.2	0	264	25	1.14797626962532	0.0159721879944936	1.14797626962532	463.715887677047	0	6.45183836110891						141	9	3	NaN	NaN	NaN	1.0576E-05	1	22187	117.99	104.81	1	30736			5309	1465	4533	4640	5309	5309		
ETGLSHLCEFIEDCEFTVLATR	22	Unmodified	_ETGLSHLCEFIEDCEFTVLATR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	876.408723	2626.20434	0.56675	0.0004967	1.3752	0.0012052	1.942	0.0017019	876.744074693195	19.641	0.04433	19.641	19.623	19.667	0	501	31	0.98941132619024	0.0201839240087274	0.98941132619024	597.544000046514	0	12.1898571095301						137	6	4	NaN	NaN	NaN	3.7424E-06	1	37344	50.519	49.733	1	23083			5310	3452	4534	4641	5310	5310		
ETGQQIGDEVR	11	Unmodified	_ETGQQIGDEVR_			0	0	0	Q9GZT9	Q9GZT9	Q9GZT9	EGLN1	Egl nine homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.299298	1230.58404	1.994	0.0012289	-1.6396	-0.0010105	0.35437	0.0002184	616.298041470861	4.2194	0.17735	4.2194	4.1396	4.3169	0	555	28	0.953040030838688	0.0182120890547127	0.953040030838688	386.003647317291	0	7.37632478480469						147	21	2	NaN	NaN	NaN	0.0032835	1	10319	64.064	44.741	1	37528			5311	2833	4535	4642	5311	5311		
ETGYTELVK	9	Unmodified	_ETGYTELVK_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.268947	1038.52334	0.95241	0.00049551	2.3381	0.0012164	3.2905	0.001712	520.270076149926	6.5249	0.15962	6.5249	6.4895	6.6491	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	362.110193883631	0	9.07036022416901						277	19	3	NaN	NaN	NaN	0.031463	1	5196	42.075	23.672	1	73938			5312	1596	4536	4643	5312	5312		
ETGYTYILPK	10	Unmodified	_ETGYTYILPK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.813522	1183.61249	1.113	0.00065979	1.8647	0.0011054	2.9777	0.0017652	592.814159899735	9.975	0.13297	9.975	9.9041	10.037	0	546	46	0.959108205975751	0.0303324855868733	0.959108205975751	388.632345267058	0	12.2907769300265						336	16	3	NaN	NaN	NaN	0.033835	1	8975	25.857	13.79	1	81955			5313	2064	4537	4644	5313	5313		
ETHADLWPAK	10	Unmodified	_ETHADLWPAK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.293288	1166.57202	1.6226	0.00094805	-2.8098	-0.0016418	-1.1873	-0.00069371	584.793832190594	5.9929	0.18627	5.9929	5.9396	6.1259	0	612	43	0.914549654013882	0.0283947491785544	0.914549654013882	370.639521533149	0	11.5075394795716						369	22	3	NaN	NaN	NaN	3.7813E-05	1	8508	119.07	88.475	1	101990			5314	973	4538	4645	5314	5314		
ETHSLFFR	8	Unmodified	_ETHSLFFR_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.764166	1035.51378	0.49555	0.00025707	1.947	0.00101	2.4425	0.0012671	518.765760349072	7.527	0.11527	7.527	7.4738	7.589	0	660	28	0.882057989648486	0.0182930452073933	0.882057989648486	357.999772355522	0	7.42457536442237						191	14	3	NaN	NaN	NaN	0.0022545	1	5126	78.178	63.643	1	66994			5315	1011	4539	4646	5315	5315		
ETHVMDYR	8	Unmodified	_ETHVMDYR_			0	0	0	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.737291	1049.46003	1.3041	0.00068562	1.6476	0.0008662	2.9517	0.0015518	525.737936236389	3.306	0.15959	3.306	3.2705	3.4301	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	352.9854056957	0	8.25668034166335						273	19	3	NaN	NaN	NaN	0.0025198	1	5450	90.308	59.747	1	63213			5316	3274	4540	4647	5316	5316		
ETIDAVPNAIPGR	13	Unmodified	_ETIDAVPNAIPGR_			0	0	0	O43670	O43670	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.862066	1351.70958	0.90168	0.00061031	-2.5769	-0.0017442	-1.6753	-0.0011339	677.361766381697	9.4342	0.15074	9.4342	9.3721	9.5228	0	519	76	0.97729762293174	0.0504563532244882	0.97729762293174	395.434830258443	0	20.415684029735						478	18	4	NaN	NaN	NaN	1.6688E-07	1	13941	104.39	95.417	1	152330			5317	216	4541	4648	5317	5317		
ETIDNNSVSSPLQSLQQR	18	Unmodified	_ETIDNNSVSSPLQSLQQR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.50326	2014.99196	2.2225	0.0022414	-4.1269	-0.004162	-1.9044	-0.0019206	1009.50254621649	11.092	0.15077	11.092	11.012	11.163	0	222	49	1.17589687683038	0.0318829689216293	1.17589687683038	474.203487482509	0	12.857432783295						413	18	4	NaN	NaN	NaN	1.1208E-07	1	31894	135.24	133.4	1	95461			5318	1304	4542	4649	5318	5318		
ETIEDVEEMLNNLPGVTSVHSR	22	Unmodified	_ETIEDVEEMLNNLPGVTSVHSR_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.735716	2468.18532	0.63159	0.00052027	0.55312	0.00045562	1.1847	0.00097589	824.070413106204	18.851	0.079779	18.851	18.816	18.896	0	453	88	1.02166545906632	0.0583839859525492	1.02166545906632	617.231466539371	0	35.2722439151845						534	10	5	NaN	NaN	NaN	4.0478E-06	1	36669	69.369	53.267	1	116050			5319	3300	4543	4650	5319	5319		
ETIELVHTEPTDVAQLPSR	19	Unmodified	_ETIELVHTEPTDVAQLPSR_			0	0	0	Q6IBS0	Q6IBS0	Q6IBS0	TWF2	Twinfilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.370814	2134.09061	1.27	0.00090473	0.31144	0.00022186	1.5815	0.0011266	712.705574933088	11.234	0.13301	11.234	11.199	11.332	0	597	118	0.924688525662974	0.078908263418114	0.924688525662974	559.132821384053	0	47.7135800120946						674	16	4	NaN	NaN	NaN	5.4264E-08	1	33807	128.68	119.1	1	158860			5320	2037	4544	4651	5320	5320		
ETIFELEDQVEQHR	14	Unmodified	_ETIFELEDQVEQHR_			0	0	0	Q5M775	Q5M775	Q5M775	SPECC1	Cytospin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.619841	1771.83769	0.09517	5.6304E-05	-1.0347	-0.00061217	-0.93956	-0.00055586	591.618820172548	12.955	0.070927	12.955	12.928	12.999	0	696	19	0.857641857947968	0.0122182397149359	0.857641857947968	519.275904898157	0	7.39777032270376						115	9	3	NaN	NaN	NaN	0.00020024	1	26458	39.702	37.401	1	25281			5321	1972	4545	4652	5321	5321		
ETIFELEDQVEQHR	14	Unmodified	_ETIFELEDQVEQHR_			0	0	0	Q5M775	Q5M775	Q5M775	SPECC1	Cytospin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.926123	1771.83769	2.6946	0.0023899	-1.1202	-0.00099351	1.5744	0.0013964	886.925042161059	12.963	0.15963	12.963	12.839	12.999	0	309	34	1.11800162319566	0.0220116788084446	1.11800162319566	451.279175768989	0	8.884971241431						175	19	3	NaN	NaN	NaN	0.0025921	1	26461	57.003	54.702	1	34118			5322	1972	4545	4652	5322	5322		
ETIIMNQILPYIK	13	Unmodified	_ETIIMNQILPYIK_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.444377	1574.8742	1.1972	0.0009439	-5.0846	-0.0040089	-3.8874	-0.003065	788.441061658101	17.637	0.12412	17.637	17.557	17.681	0	399	70	1.0578662689527	0.046157799047351	1.0578662689527	427.420073737907	0	18.6495878084193						423	15	3	NaN	NaN	NaN	3.659E-05	1	20834	107.08	92.623	1	104390			5323	906	4546	4653	5323	5323		
ETIMNQEK	8	Unmodified	_ETIMNQEK_			0	0	0	P20290	P20290	P20290	BTF3	Transcription factor BTF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.739499	991.464446	0.655	0.00032536	0.35799	0.00017783	1.013	0.00050319	496.739987441772	2.8272	0.23941	2.8272	2.7828	3.0222	0	717	34	0.84338031290707	0.0224203443559257	0.84338031290707	342.501166678171	0	9.10501938652322						358	28	3	NaN	NaN	NaN	0.0028727	1	4082	90.308	69.65	1	110400			5324	778	4547	4654	5324	5324		
ETITAPVPFDFTHK	14	Unmodified	_ETITAPVPFDFTHK_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.943596	1601.80896	-0.14758	-7.8947E-05	-0.72982	-0.00039041	-0.8774	-0.00046936	535.277479905065	12.999	0.133	12.999	12.955	13.088	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	529.569482939788	0	14.7912768290721						311	16	4	NaN	NaN	NaN	0.046217	1	21643	34.779	33.727	1	85828			5325	2612	4548	4655	5325	5325		
ETITAPVPFDFTHK	14	Unmodified	_ETITAPVPFDFTHK_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.911756	1601.80896	1.774	0.0014226	-1.5962	-0.00128	0.17784	0.00014261	801.910185249961	13.008	0.15075	13.008	12.937	13.088	0	378	55	1.07192009927972	0.0361110377354152	1.07192009927972	433.034883534978	0	14.5881572988418						538	18	3	NaN	NaN	NaN	0.059691	1	21647	47.361	41.865	1	169730			5326	2612	4548	4655	5326	5326		
ETITESAGR	9	Unmodified	_ETITESAGR_			0	0	0	Q9UM00	Q9UM00	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.240721	962.466889	0.38109	0.00018378	-0.83372	-0.00040205	-0.45263	-0.00021827	482.240346836918	2.6676	0.13301	2.6676	2.6321	2.7651	0	768	31	0.808687310729125	0.0204317832671826	0.808687310729125	328.547524458805	0	8.30087442160965						164	16	2	NaN	NaN	NaN	0.044796	1	3487	20.234	10.155	1	45062			5327	3284	4549	4656	5327	5327		
ETKPEPMEEDLPENK	15	Unmodified	_ETKPEPMEEDLPENK_			0	0	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.945225	1784.81385	-1.0415	-0.0006207	0.59328	0.00035356	-0.44826	-0.00026714	595.945935594147	5.6203	0.079834	5.6203	5.576	5.6559	0	801	31	0.78619514174348	0.0204602376573505	0.78619514174348	475.990255632283	0	12.3873491907142						154	10	4	NaN	NaN	NaN	7.4037E-12	1	26824	195.09	175.54	1	29837			5328	934	4550	4657	5328	5328		
ETKPEPMEEDLPENK	15	Unmodified	_ETKPEPMEEDLPENK_			0	0	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.945225	1784.81385	0.38596	0.00023001	0.33343	0.00019871	0.71939	0.00042872	595.945391166523	5.6115	0.11531	5.6115	5.5671	5.6825	0	723	79	0.839303037468863	0.0530488462145855	0.839303037468863	508.143649008765	0	32.117641766767						719	14	5	NaN	NaN	NaN	3.5473E-07	1	26825	147.72	125.58	1	239940			5329	934	4550	4657	5329	5329		
ETKPEPMEEDLPENK	15	Unmodified	_ETKPEPMEEDLPENK_			0	0	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.414199	1784.81385	3.6669	0.0032761	-2.8308	-0.0025291	0.83613	0.00074701	893.411857860399	5.6115	0.17739	5.6115	5.5494	5.7268	0	333	100	1.10198982404297	0.0661352338987173	1.10198982404297	444.790938796756	0	26.6938515506714						1382	21	4	NaN	NaN	NaN	1.9567E-11	1	26826	174.02	160.84	1	475530			5330	934	4550	4657	5330	5330		
ETKPEPMEEDLPENK	15	Oxidation (M)	_ETKPEPM(Oxidation (M))EEDLPENK_	ETKPEPM(1)EEDLPENK	ETKPEPM(130)EEDLPENK	0	1	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.276863	1800.80876	0.61061	0.00036714	2.5163	0.001513	3.1269	0.0018802	601.27850979981	4.0154	0.088652	4.0154	3.98	4.0686	0	723	46	0.839303037468863	0.0305987056772422	0.839303037468863	508.108883433081	0	18.5242677341529						246	11	3	NaN	NaN	NaN	1.9223E-05	1	27227	126.21	122.23	1	49560			5331	934	4550	4658	5331	5331	332	
ETKPEPMEEDLPENKK	16	Unmodified	_ETKPEPMEEDLPENKK_			0	0	2	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.643546	1912.90881	2.1499	0.001373	-0.3207	-0.00020481	1.8292	0.0011682	638.643292763969	4.3701	0.11528	4.3701	4.3347	4.4499	0	591	31	0.928742107665821	0.0202679123489945	0.928742107665821	562.003161164439	0	12.264578849522						255	14	4	NaN	NaN	NaN	0.00012923	1	29900	121.69	110.72	1	71863			5332	934	4551	4659	5332	5332		
ETKPEPMEEDLPENKK	16	Unmodified	_ETKPEPMEEDLPENKK_			0	0	2	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.643546	1912.90881	2.209	0.0014108	-0.073723	-4.7083E-05	2.1353	0.0013637	638.643949492261	4.379	0.10641	4.379	4.3258	4.4322	0	558	25	0.951016745717027	0.0161896439888687	0.951016745717027	575.482054760534	0	9.79672506348049						252	13	4	NaN	NaN	NaN	0.0046608	1	29901	51.569	46.181	1	68824			5333	934	4551	4659	5333	5333		
ETLAQLQQEFQR	12	Unmodified	_ETLAQLQQEFQR_			0	0	0	O15212	O15212	O15212	PFDN6	Prefoldin subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.88353	1489.75251	1.1476	0.000856	6.3452	0.0047327	7.4928	0.0055887	745.889184550864	12.635	0.16847	12.635	12.547	12.715	0	405	43	1.05384839605172	0.0281251167294885	1.05384839605172	426.008641966474	0	11.3693229765944						246	20	3	NaN	NaN	NaN	9.1164E-31	1	18221	200.06	162.31	1	53067			5334	154	4552	4660	5334	5334		
ETLDQINQELIQAK	14	Unmodified	_ETLDQINQELIQAK_			0	0	0	Q63HN8	Q63HN8	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.935959	1641.85737	1.562	0.0012839	4.9214	0.0040451	6.4834	0.005329	821.939760092187	12.582	0.11524	12.582	12.538	12.653	0	324	34	1.1079963157843	0.0220238059754376	1.1079963157843	447.515339518263	0	8.89532832210341						186	14	3	NaN	NaN	NaN	9.4915E-06	1	22815	82.437	62.102	1	38853			5335	2015	4553	4661	5335	5335		
ETLEQLSEFNDSLK	14	Unmodified	_ETLEQLSEFNDSLK_			0	0	0	Q8WZA0	Q8WZA0	Q8WZA0	LZIC	Protein LZIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.904325	1651.7941	2.1793	0.0018021	1.5363	0.0012704	3.7157	0.0030725	826.904890287136	13.38	0.15078	13.38	13.309	13.46	0	357	61	1.08596037261705	0.0400846886199586	1.08596037261705	438.593042364544	0	16.1892330303868						465	18	3	NaN	NaN	NaN	5.2945E-08	1	23101	117.21	78.171	1	100550			5336	2402	4554	4662	5336	5336		
ETLIQFLR	8	Unmodified	_ETLIQFLR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.297842	1018.58113	-0.74465	-0.00038	-0.011988	-6.1174E-06	-0.75664	-0.00038611	510.298042074647	14.923	0.14188	14.923	14.87	15.012	0	684	34	0.86578508874114	0.0223861150035557	0.86578508874114	351.471747024292	0	9.08780602912293						244	17	3	NaN	NaN	NaN	0.015912	1	4718	49.058	19.748	1	55998			5337	1991	4555	4663	5337	5337		
ETLLADDIDSLFK	13	Unmodified	_ETLLADDIDSLFK_			0	0	0		REV__Q8WZ64	REV__Q8WZ64			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.382497	1478.75044	1.7356	0.001285	-4.752	-0.0035183	-3.0164	-0.0022333	740.378376135678	8.6712	0.21305	8.6712	8.6091	8.8221	0	429	28	1.03776581230406	0.0180966528124649	1.03776581230406	419.536172122069	0	7.31590919564712						313	25	3	NaN	NaN	NaN	0.0073778	1	17862	29.755	0	1	93939	+		5338	3507	4556	4664	5338	5338		
ETLLAMFK	8	Unmodified	_ETLLAMFK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.762246	951.50994	-1.3101	-0.00062461	-1.2302	-0.00058651	-2.5403	-0.0012111	476.761637488877	14.959	0.16849	14.959	14.914	15.083	0	738	55	0.829104889055312	0.0367465403567987	0.829104889055312	336.897250444375	0	14.9315346863464						292	20	2	NaN	NaN	NaN	0.046909	1	3275	36.57	28.923	1	104320			5339	857	4557	4665	5339	5339		
ETLLNSATTSLNSK	14	Unmodified	_ETLLNSATTSLNSK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.888478	1477.7624	1.9176	0.0014188	0.85891	0.0006355	2.7765	0.0020543	739.88957743005	9.5583	0.2926	9.5583	9.4696	9.7622	0	420	55	1.04379886199097	0.0361908186814239	1.04379886199097	421.977738535535	0	14.6309029249249						715	34	5	NaN	NaN	NaN	1.0993E-11	1	17828	171.09	141.34	1	770980			5340	1175	4558	4666	5340	5340		
ETLTNCTEPLK	11	Unmodified	_ETLTNCTEPLK_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.321385	1304.62822	1.8593	0.0012147	-0.01984	-1.2962E-05	1.8394	0.0012017	653.822974800357	5.9396	0.19514	5.9396	5.8509	6.0461	0	528	52	0.971237000454584	0.0343482903066424	0.971237000454584	393.126081585126	0	13.9031037440692						334	23	2	NaN	NaN	NaN	0.061143	1	12495	34.953	21.679	1	127960			5341	2394	4559	4667	5341	5341		
ETLVYLTHLDYVDTER	16	Unmodified	_ETLVYLTHLDYVDTER_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.330067	1965.96837	-0.10894	-7.1502E-05	-1.0196	-0.00066919	-1.1285	-0.00074069	656.66395274737	13.762	0.088671	13.762	13.726	13.815	0	648	28	0.890187667287968	0.0182854326605286	0.890187667287968	538.568385296089	0	11.0627863138386						212	11	4	NaN	NaN	NaN	0.00068104	1	31036	65.173	63.698	1	46802			5342	135	4560	4668	5342	5342		
ETLVYLTHLDYVDTER	16	Unmodified	_ETLVYLTHLDYVDTER_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.991463	1965.96837	1.6581	0.0016315	-0.059626	-5.8672E-05	1.5985	0.0015729	984.492761699347	13.762	0.23054	13.762	13.708	13.939	-1.7764E-15	147	70	1.22562176648663	0.0456966998015786	1.22562176648663	494.340332347405	0	18.4312341578656						900	27	5	NaN	NaN	NaN	4.9089E-12	1	31037	108.91	95.695	1	345740			5343	135	4560	4668	5343	5343		
ETMQSLNDR	9	Unmodified	_ETMQSLNDR_			0	0	0	P05783;Q92764;CON__Q92764;CON__Q497I4	P05783	P05783	KRT18;KRT35	Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.250763	1092.48697	1.632	0.0008931	1.5663	0.00085718	3.1983	0.0017503	547.25193841244	3.6253	0.26598	3.6253	3.5633	3.8292	0	654	43	0.886123392477847	0.0284538779010195	0.886123392477847	359.403617175693	0	11.5406350031071						801	31	7	NaN	NaN	NaN	1.851E-06	1	6515	158.61	115.78	1	615160			5344	536	4561	4669	5344	5344		
ETMVTSTTEPSR	12	Unmodified	_ETMVTSTTEPSR_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.813924	1337.61329	2.8076	0.0018806	-2.2422	-0.0015018	0.56546	0.00037876	669.812773564604	4.0243	0.31924	4.0243	3.9268	4.246	0	567	46	0.944945209309785	0.0303618936649183	0.944945209309785	382.385154815146	0	12.2863604102729						974	37	5	NaN	NaN	NaN	2.8584E-17	1	13516	175.07	149.81	1	415470			5345	694	4562	4670	5345	5345		
ETNLDSLPLVDTHSK	15	Unmodified	_ETNLDSLPLVDTHSK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.95282	1667.83663	1.1259	0.00062705	-0.14739	-8.209E-05	0.97848	0.00054496	557.286699083627	10.445	0.3813	10.445	10.294	10.676	0	657	76	0.884090832094921	0.050792901738154	0.884090832094921	535.548739117115	0	30.7684159754382						1773	44	6	NaN	NaN	NaN	0.016861	1	23576	79.795	69.545	1	1961800			5346	588	4563	4671	5346	5346		
ETNLDSLPLVDTHSK	15	Unmodified	_ETNLDSLPLVDTHSK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.925591	1667.83663	3.1653	0.0026428	-0.8931	-0.00074567	2.2722	0.0018971	834.924860627755	10.445	0.25717	10.445	10.33	10.587	0	267	82	1.14597988355104	0.0539543957450384	1.14597988355104	462.796442357736	0	21.7891280281388						1478	30	5	NaN	NaN	NaN	4.7187E-33	1	23579	212.78	176.26	1	737080			5347	588	4563	4671	5347	5347		
ETPAATEAPSSTPK	14	Unmodified	_ETPAATEAPSSTPK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.840996	1385.66744	2.6808	0.0018601	-1.3183	-0.00091472	1.3625	0.00094536	693.840772518644	3.4124	0.55875	3.4124	3.3326	3.8914	0	498	127	0.991429299781895	0.0848547619191311	0.991429299781895	401.05327052917	0	34.3254731276634						1962	64	5	NaN	NaN	NaN	3.8961E-24	1	15002	228.06	194.64	1	1179300			5348	1468	4564	4672	5348	5348		
ETPDTLSDPQTVPEEER	17	Unmodified	_ETPDTLSDPQTVPEEER_			0	0	0	O94822	O94822	O94822	LTN1	E3 ubiquitin-protein ligase listerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.947449	1941.88034	2.8948	0.0028136	-1.1507	-0.0011184	1.7441	0.0016952	971.946800814346	7.3762	0.06205	7.3762	7.3408	7.4028	0	276	34	1.13998907770044	0.0219693125101945	1.13998907770044	459.841364738649	0	8.86183810412996						75	8	2	NaN	NaN	NaN	0.032315	1	30539	31.801	26.984	1	13811			5349	388	4565	4673	5349	5349		
ETPFELIEALLK	12	Unmodified	_ETPFELIEALLK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.895043	1401.77553	0.35006	0.00024571	0.024313	1.7065E-05	0.37437	0.00026277	701.895134371049	20.244	0.053192	20.244	20.235	20.288	0	459	55	1.01763759082241	0.0362558355413685	1.01763759082241	411.608313058334	0	14.6645558696814						89	7	2	NaN	NaN	NaN	0.0048078	1	15522	48.785	32.133	1	68344			5350	1575	4566	4674	5350	5350		
ETPLPIDPSMFPTWPAK	17	Unmodified	_ETPLPIDPSMFPTWPAK_			0	0	0	P21127;Q9UQ88	P21127	P21127	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.987137	1925.95972	1.1593	0.0011176	1.8953	0.001827	3.0546	0.0029446	964.490682685754	18.745	0.10639	18.745	18.683	18.789	0	219	49	1.17788915118882	0.0318961142140304	1.17788915118882	475.157107126363	0	12.8668010425383						278	13	2	NaN	NaN	NaN	0.064235	1	30189	31.722	26.628	1	77630			5351	787	4567	4675	5351	5351		
ETQFAQIFEPLHK	13	Unmodified	_ETQFAQIFEPLHK_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.411923	1586.80929	1.6017	0.0012724	-0.11112	-8.8275E-05	1.4905	0.0011841	794.41150717053	13.469	0.17734	13.469	13.389	13.567	0	369	31	1.07793901817685	0.0200589169906749	1.07793901817685	435.501690185412	0	8.10406906645119						207	21	2	NaN	NaN	NaN	0.0021494	1	21175	79.889	67.307	1	55378			5352	3041	4568	4676	5352	5352		
ETQSQLETER	10	Unmodified	_ETQSQLETER_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.791306	1219.56806	1.7741	0.0010836	-0.14888	-9.0937E-05	1.6252	0.00099264	610.791197662287	2.8538	0.32807	2.8538	2.7651	3.0932	0	606	58	0.918606045818476	0.0385490956418131	0.918606045818476	372.094343787953	0	15.6148552600469						402	38	3	NaN	NaN	NaN	0.056926	1	10003	36.24	14.965	1	104900			5353	718	4569	4677	5353	5353		
ETQTECEWTVDTSK	14	Unmodified	_ETQTECEWTVDTSK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.367249	1712.71994	2.7753	0.0023794	-0.057694	-4.9465E-05	2.7176	0.00233	857.366363134374	6.9239	0.17731	6.9239	6.8796	7.0569	-8.8818E-16	378	55	1.07192009927972	0.0361259765549562	1.07192009927972	432.794397094998	0	14.5860873894205						653	21	5	NaN	NaN	NaN	6.39E-17	1	24838	163.09	147.48	1	212120			5354	718	4570	4678	5354	5354		
ETQVILLDTPGIISPGK	17	Unmodified	_ETQVILLDTPGIISPGK_			0	0	0	O75616	O75616	O75616	ERAL1	GTPase Era, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.006384	1779.99822	1.3392	0.0011933	-0.90464	-0.00080604	0.4346	0.00038723	891.007332228504	15.633	0.079785	15.633	15.606	15.686	0	222	55	1.17589687683038	0.0358880628885423	1.17589687683038	474.631584583416	0	14.485630918871						316	10	3	NaN	NaN	NaN	7.7821E-07	1	26684	59.77	52.915	1	57122			5355	348	4571	4679	5355	5355		
ETSEELLPPPVQTQIK	16	Unmodified	_ETSEELLPPPVQTQIK_			0	0	0	Q8N183	Q8N183	Q8N183	NDUFAF2	Mimitin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.985649	1807.95674	1.9462	0.0017612	-0.062825	-5.6856E-05	1.8833	0.0017044	904.985685720927	12.183	0.42568	12.183	11.988	12.414	0	285	88	1.13399579921816	0.0579271133116515	1.13399579921816	457.664178902052	0	23.3785387637427						1447	49	4	NaN	NaN	NaN	0.0030303	1	27441	64.266	58.238	1	425820			5356	2238	4572	4680	5356	5356		
ETSGNLEQLLLAVVK	15	Unmodified	_ETSGNLEQLLLAVVK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.641805	1612.90359	-1.1845	-0.00063801	-0.42512	-0.00022899	-1.6096	-0.000867	538.641629425016	19.942	0.017735	19.942	19.933	19.951	0	705	22	0.851531465363931	0.0142615450408974	0.851531465363931	515.970063054065	0	8.64152482122927						46	3	3	NaN	NaN	NaN	0.06399	1	21989	16.992	16.668	1	11962			5357	591	4573	4681	5357	5357		
ETSGNLEQLLLAVVK	15	Unmodified	_ETSGNLEQLLLAVVK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.45907	1612.90359	1.5157	0.0012239	-0.43309	-0.0003497	1.0826	0.00087419	807.458846845525	19.942	0.088686	19.942	19.924	20.013	0	375	79	1.07392668217569	0.0521532198507682	1.07392668217569	433.819915631219	0	21.0676443849222						361	11	4	NaN	NaN	NaN	5.1421E-56	1	21990	281.24	261.91	1	206120			5358	591	4573	4681	5358	5358		
ETSGNLEQLLLAVVK	15	Unmodified	_ETSGNLEQLLLAVVK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.45907	1612.90359	1.3077	0.0010559	0.1794	0.00014486	1.4871	0.0012007	807.459339377836	19.942	0.017735	19.942	19.933	19.951	0	276	46	1.13998907770044	0.0299787708874888	1.13998907770044	460.506262796453	0	12.1101263289966						95	3	3	NaN	NaN	NaN	0.0084655	1	21991	53.028	51.976	1	27798			5359	591	4573	4681	5359	5359		
ETSSDVALASHILTALR	17	Unmodified	_ETSSDVALASHILTALR_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.323135	1782.94758	0.045046	2.6817E-05	-1.1441	-0.00068113	-1.0991	-0.00065431	595.657061082846	16.165	0.16849	16.165	16.094	16.262	0	645	88	0.892219381832517	0.0588381272725519	0.892219381832517	540.185429698301	0	35.6229641616698						609	20	5	NaN	NaN	NaN	0.0012511	1	26772	51.829	50.948	1	158200			5360	70	4574	4682	5360	5360		
ETSSDVALASHILTALR	17	Unmodified	_ETSSDVALASHILTALR_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.481065	1782.94758	1.6505	0.0014731	-0.46215	-0.00041246	1.1884	0.0010606	892.982290845809	16.165	0.15964	16.165	16.085	16.245	0	186	43	1.1997861197946	0.0278516583469064	1.1997861197946	484.267893804815	0	11.2417235906485						467	19	5	NaN	NaN	NaN	0.00015176	1	26773	59.67	55.364	1	153610			5361	70	4574	4682	5361	5361		
ETSSTGEEALVAAVR	15	Unmodified	_ETSSTGEEALVAAVR_			0	0	0	Q9H6R4	Q9H6R4	Q9H6R4	NOL6	Nucleolar protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.383559	1518.75257	2.1916	0.0016664	-1.7797	-0.0013533	0.41186	0.00031317	760.381640971701	9.6381	0.18621	9.6381	9.5317	9.7179	0	306	172	1.12000185836644	0.11437566639618	1.12000185836644	452.671034849995	0	46.2272012161937						647	22	3	NaN	NaN	NaN	0.0063564	1	19096	32.759	8.8277	1	141460			5362	2906	4575	4683	5362	5362		
ETSTTVEEATTIVK	14	Unmodified	_ETSTTVEEATTIVK_			0	0	0	Q8N3X1	Q8N3X1	Q8N3X1	FNBP4	Formin-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.888143	1507.76173	1.7641	0.0013317	0.23884	0.0001803	2.003	0.001512	754.888660710028	8.547	0.097563	8.547	8.5027	8.6002	0	399	40	1.0578662689527	0.0261143777195971	1.0578662689527	427.585840107789	0	10.5553399931928						274	12	4	NaN	NaN	NaN	3.5478E-05	1	18729	94.791	83.436	1	72593			5363	2250	4576	4684	5363	5363		
ETSYGLSFFK	10	Unmodified	_ETSYGLSFFK_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.790047	1177.56554	1.3516	0.00079713	0.67065	0.00039554	2.0222	0.0011927	589.78993685367	13.54	0.14185	13.54	13.496	13.637	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	375.528966834649	0	9.8556965178538						312	17	3	NaN	NaN	NaN	0.013739	1	8819	36.24	25.538	1	94804			5364	3421	4577	4685	5364	5364		
ETTDTDTADQVIASFK	16	Unmodified	_ETTDTDTADQVIASFK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.409971	1740.80539	2.226	0.0019398	2.1671	0.0018885	4.3932	0.0038283	871.410680872427	13.096	0.23943	13.096	13.008	13.247	0	303	73	1.12200181823275	0.0480023729585286	1.12200181823275	452.956516763134	0	19.3787454693319						1649	28	7	NaN	NaN	NaN	6.2381E-25	1	25618	211.52	196.38	1	875000			5365	221	4578	4686	5365	5365		
ETTESLHGDISSLK	14	Unmodified	_ETTESLHGDISSLK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.87811	1515.74167	2.1385	0.0016229	-0.9129	-0.00069278	1.2256	0.00093012	758.877344317178	6.5427	0.11527	6.5427	6.5161	6.6313	0	405	43	1.05384839605172	0.0281367598695683	1.05384839605172	425.941435015127	0	11.3722352478978						320	14	4	NaN	NaN	NaN	1.2539E-05	1	19005	93.162	76.875	1	96199			5366	978	4579	4687	5366	5366		
ETTGIVSMVYTQSEILQK	18	Unmodified	_ETTGIVSMVYTQSEILQK_			0	0	0	Q9NRW7	Q9NRW7	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.02191	2026.02926	1.2844	0.0013024	6.6152	0.0067079	7.8996	0.0080103	1014.02915995986	16.085	0.13303	16.085	16.005	16.138	0	186	31	1.1997861197946	0.0198885785601712	1.1997861197946	483.819222330826	0	8.02015997142456						208	16	3	NaN	NaN	NaN	0.002414	1	32085	41.317	37.245	1	37322			5367	3027	4580	4688	5367	5367		
ETTGTGPNVYHENDTIAK	18	Unmodified	_ETTGTGPNVYHENDTIAK_			0	0	0	Q4G0F5	Q4G0F5	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.641193	1945.90175	1.0092	0.00065562	1.7498	0.0011367	2.7589	0.0017923	649.642644937964	4.8312	0.035461	4.8312	4.8223	4.8578	0	660	22	0.882057989648486	0.0142298979470937	0.882057989648486	533.688412567485	0	8.60978726512997						54	5	2	NaN	NaN	NaN	0.026439	1	30640	19.637	15.082	1	12423			5368	1939	4581	4689	5368	5368		
ETTVGAVTVTHK	12	Unmodified	_ETTVGAVTVTHK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.838059	1241.66157	2.3644	0.0014703	-0.98394	-0.00061185	1.3805	0.00085844	621.83737928767	3.6342	0.1507	3.6342	3.5987	3.7494	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.971326956839	0	8.99965783658024						268	18	3	NaN	NaN	NaN	0.00632	1	10675	68.49	62.624	1	68809			5369	3437	4582	4690	5369	5369		
ETVAVKPTENNEEEFTSK	18	Unmodified	_ETVAVKPTENNEEEFTSK_			0	0	1	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.663775	2050.96949	0.80788	0.00055313	1.1646	0.00079739	1.9725	0.0013505	684.998667319246	5.7445	0.079802	5.7445	5.7179	5.7978	-8.8818E-16	672	43	0.873923798053065	0.0284775811147984	0.873923798053065	528.575158350107	0	17.2240897669989						257	10	4	NaN	NaN	NaN	1.6034E-07	1	32555	113.34	102.37	1	56948			5370	288	4583	4691	5370	5370		
ETVAYLQAHALTTEGIFR	18	Unmodified	_ETVAYLQAHALTTEGIFR_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.52855	2019.04254	1.3522	0.0013664	0.25443	0.00025711	1.6066	0.0016235	1010.52821870861	13.895	0.062062	13.895	13.868	13.93	0	120	28	1.2434810169581	0.0178494602725052	1.2434810169581	501.451219408279	0	7.19804604763743						121	8	3	NaN	NaN	NaN	0.022234	1	31970	30.027	24.412	1	21835			5371	1573	4584	4692	5371	5371		
ETVEEQVSTTER	12	Unmodified	_ETVEEQVSTTER_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.333535	1406.65252	2.2841	0.0016087	-1.934	-0.0013622	0.35008	0.00024657	704.332263765634	4.8933	0.16846	4.8933	4.8401	5.0085	0	534	46	0.967195187796614	0.030307312656189	0.967195187796614	391.192412100438	0	12.2581159334199						389	20	4	NaN	NaN	NaN	1.8767E-05	1	15664	141.29	132.32	1	115770			5372	1696	4585	4693	5372	5372		
ETVQHSDVLFLAVK	14	Unmodified	_ETVQHSDVLFLAVK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.290996	1584.85116	-1.4863	-0.00078669	-1.1758	-0.00062233	-2.6621	-0.001409	529.290359693797	11.589	0.15968	11.589	11.553	11.713	0	750	28	0.820941264895493	0.0183745423602224	0.820941264895493	497.509358640675	0	11.135396861935						301	19	4	NaN	NaN	NaN	0.0027448	1	21109	48.701	44.455	1	76003			5373	938	4586	4694	5373	5373		
ETVQHSDVLFLAVK	14	Unmodified	_ETVQHSDVLFLAVK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.432855	1584.85116	1.4159	0.0011234	1.2704	0.001008	2.6863	0.0021314	793.434317634549	11.589	0.12423	11.589	11.553	11.678	0	375	55	1.07392668217569	0.0360961081802142	1.07392668217569	433.885286013213	0	14.5834631746063						315	15	3	NaN	NaN	NaN	0.00296	1	21110	55.604	48.464	1	85677			5374	938	4586	4694	5374	5374		
ETVQTTEDQILK	12	Unmodified	_ETVQTTEDQILK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.864471	1403.71439	2.2847	0.0016058	0.46168	0.0003245	2.7464	0.0019303	702.864795889282	7.8463	0.18621	7.8463	7.7842	7.9704	0	471	49	1.00957851518677	0.0322452204768515	1.00957851518677	408.343112123395	0	13.0421888764012						566	22	4	NaN	NaN	NaN	3.3981E-05	1	15578	94.66	74.477	1	357930			5375	753	4587	4695	5375	5375		
ETVSEESNVLCLSK	14	Unmodified	_ETVSEESNVLCLSK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.885078	1593.7556	2.6428	0.0021086	1.4726	0.001175	4.1154	0.0032836	797.886646701262	9.6115	0.70932	9.6115	9.5406	10.25	0	387	121	1.06589869032374	0.0803686970051189	1.06589869032374	430.620992304801	0	32.4687968648098						2728	81	7	NaN	NaN	NaN	2.0494E-33	1	21392	213.77	198.62	1	5158200			5376	679	4588	4696	5376	5376		
ETVVEVPQVTWEDIGGLEDVK	21	Unmodified	_ETVVEVPQVTWEDIGGLEDVK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1171.59174	2341.16892	1.3319	0.0015605	-1.2005	-0.0014065	0.13143	0.00015399	1172.09213373999	18.346	0.21281	18.346	18.257	18.47	0	66	97	1.27913350869533	0.0633909423244925	1.27913350869533	515.343630061241	0	25.5392561514764						1421	25	5	NaN	NaN	NaN	1.8359E-11	1	35975	89.636	85.039	1	381350			5377	1265	4589	4697	5377	5377		
ETVYCLNDDDETEVLK	16	Unmodified	_ETVYCLNDDDETEVLK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.932953	1941.85135	2.7626	0.0026851	-0.81647	-0.00079356	1.9461	0.0018915	972.433835868514	11.163	0.16849	11.163	11.101	11.27	0	180	160	1.203763835057	0.105503910237199	1.203763835057	485.566461022691	0	42.5574841393258						2313	20	5	NaN	NaN	NaN	8.1663E-25	1	30538	202.24	189.56	1	1081300			5378	674	4590	4698	5378	5378		
ETWLSENQR	9	Unmodified	_ETWLSENQR_			0	0	0	Q01082;P11277;O15020	Q01082;O15020	Q01082	SPTBN1;SPTB;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.778002	1161.54145	0.60174	0.00035008	4.118	0.0023958	4.7197	0.0027458	581.7793885024	6.2855	0.22169	6.2855	6.2323	6.454	0	633	55	0.900343422309015	0.0365379208740513	0.900343422309015	364.900597997751	0	14.8084706859332						489	26	4	NaN	NaN	NaN	0.001349	1	8373	79.809	62.414	1	132710			5379	1511;137	4591	4699	5379	5379		
ETWYLSWALDTNQEER	16	Unmodified	_ETWYLSWALDTNQEER_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.96852	2039.92248	0.99659	0.0010175	1.8087	0.0018466	2.8053	0.0028641	1021.47197909141	17.495	0.079824	17.495	17.468	17.548	0	207	52	1.18585551256002	0.0338593720213791	1.18585551256002	478.179491398811	0	13.6533136801071						205	10	3	NaN	NaN	NaN	0.0039863	1	32338	51.569	45.047	1	29192			5380	709;2224	4592	4700	5380	5380		
ETYCPVIVDNLIQLCK	16	Unmodified	_ETYCPVIVDNLIQLCK_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.994636	1963.97472	0.5771	0.00056729	-2.2582	-0.0022198	-1.6811	-0.0016525	983.493541134596	17.273	0.21282	17.273	17.202	17.415	0	213	46	1.18187287897418	0.0298800183306296	1.18187287897418	476.698125273429	0	12.0518449782093						322	25	2	NaN	NaN	NaN	0.0036662	1	31003	44.045	41.804	1	105530			5381	2807	4593	4701	5381	5381		
ETYLAILMDR	10	Unmodified	_ETYLAILMDR_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.818281	1223.62201	0.46997	0.000288	-1.4385	-0.00088152	-0.96851	-0.00059352	612.817636490131	16.12	0.19508	16.12	16.014	16.209	0	567	37	0.944945209309785	0.0242911943445451	0.944945209309785	382.749207944448	0	9.83912644225205						353	23	4	NaN	NaN	NaN	0.00055671	1	10118	76.605	55.33	1	82868			5382	2557	4594	4702	5382	5382		
ETYPNYLPLYVAR	13	Unmodified	_ETYPNYLPLYVAR_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.914298	1597.81404	1.7771	0.0014215	1.2708	0.0010166	3.0479	0.0024381	799.914982669365	14.631	0.2128	14.631	14.515	14.728	0	351	70	1.08996939197032	0.0461259947447743	1.08996939197032	440.335873718213	0	18.6344041829892						440	25	2	NaN	NaN	NaN	0.0001193	1	21513	81.163	68.568	1	143520			5383	883	4595	4703	5383	5383		
EVAAFAQFGSDLDAATQQLLSR	22	Unmodified	_EVAAFAQFGSDLDAATQQLLSR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.060639	2337.16009	0.65457	0.0005106	-0.44011	-0.00034331	0.21446	0.00016729	780.394583011938	20.022	0.062056	20.022	20.004	20.066	0	456	61	1.01965166402748	0.0402620166528518	1.01965166402748	616.208118845525	0	24.3316246301074						246	8	6	NaN	NaN	NaN	6.0095E-38	1	35947	291.52	285.42	1	124920			5384	840	4596	4704	5384	5384		
EVAAFAQFGSDLDAATQQLLSR	22	Unmodified	_EVAAFAQFGSDLDAATQQLLSR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1169.58732	2337.16009	0.52977	0.00061961	-0.074023	-8.6576E-05	0.45575	0.00053303	1170.08868052724	20.022	0.070945	20.022	20.013	20.084	0	63	58	1.28111162701928	0.0376048516734613	1.28111162701928	516.1458057514	0	15.1505817742989						233	9	6	NaN	NaN	NaN	5.7838E-38	1	35948	163.25	144.24	1	71103			5385	840	4596	4704	5385	5385		
EVAEAATGEDASSPPPK	17	Unmodified	_EVAEAATGEDASSPPPK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.391581	1654.76861	4.09	0.0033881	-3.7037	-0.0030681	0.38627	0.00031998	828.38871502679	3.7494	0.39011	3.7494	3.6608	4.0509	0	417	34	1.04580932352505	0.0221181322684503	1.04580932352505	422.370710832639	0	8.93284372052352						633	45	3	NaN	NaN	NaN	3.9843E-14	1	23181	153.52	136.53	1	125760			5386	2647	4597	4705	5386	5386		
EVAEAYEVLSDPK	13	Unmodified	_EVAEAYEVLSDPK_			0	0	0	Q9UDY4	Q9UDY4	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.359022	1448.70349	2.0363	0.0014771	1.2628	0.00091599	3.2991	0.0023931	725.360023830963	10.117	0.15962	10.117	10.055	10.214	0	432	37	1.035754240522	0.0241405316442127	1.035754240522	418.803436383788	0	9.76113561807153						384	19	4	NaN	NaN	NaN	9.3525E-06	1	16941	129.69	97.138	1	136870			5387	3197	4598	4706	5387	5387		
EVAELEANLPCTCK	14	Unmodified	_EVAELEANLPCTCK_			0	0	0	Q969M7	Q969M7	Q969M7	UBE2F	NEDD8-conjugating enzyme UBE2F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.381648	1632.74874	2.2359	0.0018275	1.9139	0.0015644	4.1497	0.0033919	817.883924460583	9.6913	0.17737	9.6913	9.6115	9.7889	0	372	52	1.07593298845566	0.0341119209023848	1.07593298845566	434.585383904777	0	13.7783137055501						451	21	4	NaN	NaN	NaN	2.6141E-11	1	22560	135.5	104.08	1	142920			5388	2460	4599	4707	5388	5388		
EVAENQQNQSSDPEEEK	17	Unmodified	_EVAENQQNQSSDPEEEK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.921962	1959.82937	2.9131	0.0028575	-3.1118	-0.0030525	-0.19877	-0.00019498	981.419372191161	2.5523	0.026605	2.5523	2.5434	2.57	0	342	19	1.09598084995137	0.0120187763173571	1.09598084995137	442.060887754582	0	4.84774065971163						35	4	2	NaN	NaN	NaN	0.00011272	1	30899	74.733	74.113	1	5809.5			5389	206	4600	4708	5389	5389		
EVAFFNNFLTDAK	13	Unmodified	_EVAFFNNFLTDAK_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.377549	1514.74054	0.97485	0.00073931	1.6678	0.0012648	2.6426	0.0020041	758.378983321384	17.167	0.18621	17.167	17.114	17.3	0	393	46	1.0618830335572	0.0301236649306122	1.0618830335572	429.19140872053	0	12.1753693945787						588	22	4	NaN	NaN	NaN	1.0719E-05	1	18966	112.93	88.104	1	278830			5390	2786	4601	4709	5390	5390		
EVANSTANLVK	11	Unmodified	_EVANSTANLVK_			0	0	0	Q9Y490;Q9Y4G6	Q9Y490	Q9Y490	TLN1;TLN2	Talin-1;Talin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.311677	1144.6088	1.4725	0.00084419	-2.2613	-0.0012964	-0.78885	-0.00045225	573.310840272186	4.8489	0.10642	4.8489	4.7869	4.8933	0	624	46	0.906433495720521	0.0304250551653156	0.906433495720521	367.432639755164	0	12.3331258022433						242	13	3	NaN	NaN	NaN	0.00083637	1	7924	55.235	38.777	1	65730			5391	3406	4602	4710	5391	5391		
EVATNSELVQSGK	13	Unmodified	_EVATNSELVQSGK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533	Q04695	Q04695	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.348988	1360.68342	3.2494	0.002214	-0.28373	-0.00019332	2.9657	0.0020207	681.349100666687	4.5031	0.46996	4.5031	4.4145	4.8844	0	480	130	1.00353128488872	0.0868330731682581	1.00353128488872	406.022395914612	0	35.1321109200043						2277	54	5	NaN	NaN	NaN	5.6609E-17	1	14228	196.44	126.73	1	2148300		+	5392	36	4603	4711	5392	5392		
EVAYLGNEVSDEECLK	16	Unmodified	_EVAYLGNEVSDEECLK_			0	0	0	Q8NFW8	Q8NFW8	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.924931	1853.83531	2.3096	0.0021432	0.23971	0.00022243	2.5493	0.0023656	927.9255443752	10.427	0.10642	10.427	10.392	10.498	0	270	37	1.14398322290989	0.0239648752236348	1.14398322290989	461.607968991846	0	9.67005211054254						229	13	4	NaN	NaN	NaN	1.9704E-12	1	28567	123.99	119.75	1	42248			5393	2322	4604	4712	5393	5393		
EVCFACVDGK	10	Unmodified	_EVCFACVDGK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.757366	1183.50018	1.2409	0.00073557	0.43394	0.00025722	1.6749	0.00099279	592.757936212548	7.3231	0.25714	7.3231	7.261	7.5181	0	624	34	0.906433495720521	0.0223271759310266	0.906433495720521	367.288866936121	0	9.04702130747239						456	30	3	NaN	NaN	NaN	0.00058548	1	8960	81.163	68.336	1	249370			5394	1503	4605	4713	5394	5394		
EVCGFAPYER	10	Unmodified	_EVCGFAPYER_			0	0	0	Q9Y3U8	Q9Y3U8	Q9Y3U8	RPL36	60S ribosomal protein L36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.27678	1226.53901	1.9962	0.0012262	0.062202	3.8209E-05	2.0584	0.0012644	614.276771791492	7.6422	0.35478	7.6422	7.5536	7.9083	0	603	73	0.920633820089869	0.0486362780919285	0.920633820089869	372.892002926351	0	19.6995578011807						1195	41	5	NaN	NaN	NaN	4.4525E-06	1	10187	138.26	128.18	1	768600			5395	3400	4606	4714	5395	5395		
EVDATSPAPSTSSTVK	16	Unmodified	_EVDATSPAPSTSSTVK_			0	0	0	Q16666	Q16666	Q16666	IFI16	Gamma-interferon-inducible protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.888674	1575.7628	3.1182	0.0024599	-0.73612	-0.00058072	2.3821	0.0018792	788.88868097048	4.3169	0.1153	4.3169	4.2815	4.3968	0	435	64	1.03374239103424	0.0422488613849417	1.03374239103424	417.670998150076	0	17.0701368720095						373	14	3	NaN	NaN	NaN	0.023977	1	20849	54.27	34.946	1	104360			5396	1899	4607	4715	5396	5396		
EVDDLGPEVGDIK	13	Unmodified	_EVDDLGPEVGDIK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.343372	1384.67219	1.6846	0.001168	-0.79294	-0.00054978	0.89164	0.00061821	693.343287134169	9.9041	0.23937	9.9041	9.8066	10.046	0	492	40	0.995464410099171	0.0262264093657728	0.995464410099171	402.688411903821	0	10.6091900727927						760	28	5	NaN	NaN	NaN	0.00078539	1	14971	70.195	59.945	1	385570			5397	181	4608	4716	5397	5397		
EVDEDFDSK	9	Unmodified	_EVDEDFDSK_			0	0	0	Q96C19	Q96C19	Q96C19	EFHD2	EF-hand domain-containing protein D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.227476	1082.4404	1.2428	0.00067387	2.7627	0.001498	4.0054	0.0021719	542.228967628353	4.1751	0.23944	4.1751	4.0864	4.3258	0	678	34	0.869855008346864	0.0223861150035557	0.869855008346864	352.846083846555	0	9.08065474791579						358	28	3	NaN	NaN	NaN	0.0025252	1	6258	56.378	45.676	1	89652			5398	2488	4609	4717	5398	5398		
EVDEGAWETK	10	Unmodified	_EVDEGAWETK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.264393	1162.51423	0.38161	0.0002222	1.1951	0.00069587	1.5767	0.00091807	582.264971130085	5.5051	0.14181	5.5051	5.4697	5.6115	0	660	40	0.882057989648486	0.0264306247374108	0.882057989648486	357.486188579763	0	10.7119751876227						219	17	3	NaN	NaN	NaN	0.0092271	1	8399	57.032	43.385	1	44510			5399	2165	4610	4718	5399	5399		
EVDEQMLAIQSK	12	Unmodified	_EVDEQMLAIQSK_			0	0	0	Q13509;Q9BUF5	Q13509;Q9BUF5	Q9BUF5	TUBB3;TUBB6	Tubulin beta-3 chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.847767	1389.68098	1.4932	0.001039	-0.86457	-0.00060161	0.62862	0.00043743	695.847887896829	8.9287	0.22182	8.9287	8.8221	9.044	0	492	85	0.995464410099171	0.0564447681024964	0.995464410099171	402.674062671677	0	22.8324025025954						761	26	5	NaN	NaN	NaN	1.9702E-07	1	15133	162.21	123.2	1	338790			5400	2745;1675	4611	4719	5400	5400		
EVDEQMLNVQNK	12	Unmodified	_EVDEQMLNVQNK_			0	0	0	P07437;P68371;Q9BVA1;Q13885	P07437;P68371;Q9BVA1	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.848298	1445.68204	2.2479	0.0016271	-8.0835	-0.0058512	-5.8356	-0.0042241	724.344146089454	7.9261	0.34589	7.9261	7.7044	8.0502	0	483	91	1.00151498427745	0.0604180882052699	1.00151498427745	404.966959888911	0	24.4303179551929						1552	40	5	NaN	NaN	NaN	0.037385	1	16847	53.517	11.721	1	474540			5401	1449;560;2761	4612	4720	5401	5401		
EVDEQMLNVQNK	12	Unmodified	_EVDEQMLNVQNK_			0	0	0	P07437;P68371;Q9BVA1;Q13885	P07437;P68371;Q9BVA1	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.848298	1445.68204	2.6332	0.001906	1.5945	0.0011542	4.2277	0.0030602	723.849676812438	7.4028	0.40793	7.4028	7.2964	7.7044	0	477	124	1.0055473068722	0.0825885740560371	1.0055473068722	406.597409798836	0	33.3950477124911						2377	47	6	NaN	NaN	NaN	5.3975E-17	1	16849	187.1	165.06	1	5755300			5402	1449;560;2761	4612	4720	5402	5402		
EVDEQMLNVQNK	12	Oxidation (M)	_EVDEQM(Oxidation (M))LNVQNK_	EVDEQM(1)LNVQNK	EVDEQM(230)LNVQNK	0	1	0	P07437;P68371;Q9BVA1;Q13885	P07437;P68371;Q9BVA1	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.845755	1461.67696	2.6077	0.0019084	-1.5743	-0.0011521	1.0334	0.00075632	731.844898669743	4.9465	0.39013	4.9465	4.8578	5.2479	0	489	73	0.997481546940468	0.0484146635728933	0.997481546940468	403.29416026468	0	19.5746489246004						1089	45	3	NaN	NaN	NaN	4.4084E-23	1	17313	229.38	193.14	1	1108000			5403	1449;560;2761	4612	4721	5403	5403	138	
EVDGLLTSEPMGSPVSSK	18	Unmodified	_EVDGLLTSEPMGSPVSSK_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.950949	1831.88734	1.1701	0.0010729	-1.0267	-0.0009414	0.1434	0.00013149	917.451839507094	11.926	0.12413	11.926	11.864	11.988	0	291	82	1.12999890578964	0.0539395522746982	1.12999890578964	456.005741212783	0	21.7670525074723						526	15	3	NaN	NaN	NaN	0.00013349	1	28020	91.032	77.173	1	114900			5404	2391	4613	4722	5404	5404		
EVDMVDITEDFLVQAK	16	Unmodified	_EVDMVDITEDFLVQAK_			0	0	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.455867	1850.89718	1.1886	0.0011012	1.3609	0.0012608	2.5495	0.002362	926.958957656556	19.579	0.097569	19.579	19.552	19.649	0	246	37	1.1599488233373	0.0239385276642174	1.1599488233373	468.055752859097	0	9.65953442323149						256	12	3	NaN	NaN	NaN	1.9483E-06	1	28521	108.2	107.39	1	83249			5405	2760	4614	4723	5405	5405		
EVDYEAGDIPTEWEAWIR	18	Unmodified	_EVDYEAGDIPTEWEAWIR_			0	0	0	Q8N183	Q8N183	Q8N183	NDUFAF2	Mimitin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.00256	2177.99056	0.90625	0.00098781	0.34767	0.00037896	1.2539	0.0013668	1090.50435973074	18.993	0.062063	18.993	18.967	19.029	0	180	58	1.203763835057	0.0377960922169496	1.203763835057	485.192706495163	0	15.2342076939154						296	8	4	NaN	NaN	NaN	4.7547E-15	1	34416	132.9	130.19	1	58663			5406	2238	4615	4724	5406	5406		
EVEAVDSEYQLAR	13	Unmodified	_EVEAVDSEYQLAR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.865002	1507.71545	1.8474	0.0013945	-2.415	-0.001823	-0.5676	-0.00042846	754.862464220936	8.139	0.12407	8.139	8.077	8.2011	0	411	61	1.04982941439551	0.0402231257358656	1.04982941439551	424.337500390521	0	16.2580514497002						224	15	2	NaN	NaN	NaN	0.0048074	1	18720	55.754	38.762	1	50597			5407	240	4616	4725	5407	5407		
EVEAVIPDHCIFASNTSALPISEIAAVSK	29	Unmodified	_EVEAVIPDHCIFASNTSALPISEIAAVSK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1023.52514	3067.5536	1.5257	0.0015616	-0.46137	-0.00047223	1.0643	0.0010893	1023.85924561099	17.583	0.1241	17.583	17.539	17.663	0	369	127	1.07793901817685	0.0842360059286871	1.07793901817685	650.515900909119	0	50.8348434945468						1255	15	6	NaN	NaN	NaN	2.627E-15	1	38315	101.55	99.915	1	364840			5408	1026	4617	4726	5408	5408		
EVEEDEYK	8	Unmodified	_EVEEDEYK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.724569	1039.43459	1.789	0.00093158	0.2222	0.00011571	2.0112	0.0010473	520.724560364304	2.7474	0.31925	2.7474	2.7119	3.0311	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	348.07280861915	0	9.09168560314419						681	37	4	NaN	NaN	NaN	0.042335	1	5207	42.835	28.3	1	206660			5409	700	4618	4727	5409	5409		
EVEEEPGIHSLK	12	Unmodified	_EVEEEPGIHSLK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.846081	1365.67761	2.68	0.0018327	-1.8325	-0.0012531	0.8475	0.00057956	683.844847153431	5.1415	0.19511	5.1415	5.0972	5.2923	0	477	76	1.0055473068722	0.050435430095882	1.0055473068722	406.823109426406	0	20.4051051170213						916	23	4	NaN	NaN	NaN	2.5139E-07	1	14363	138.23	81.2	1	298980			5410	3410	4619	4728	5410	5410		
EVEEEPGIHSLK	12	Unmodified	_EVEEEPGIHSLK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.233146	1365.67761	-0.41379	-0.00018878	2.0667	0.00094291	1.6529	0.00075412	456.234227084575	5.1504	0.11528	5.1504	5.0883	5.2036	0	768	34	0.808687310729125	0.0224796529754165	0.808687310729125	490.762952753892	0	13.6420848017899						194	14	3	NaN	NaN	NaN	0.028524	1	14364	47.561	40.411	1	46074			5411	3410	4619	4728	5411	5411		
EVEEISLLQPQVEESVLNLGK	21	Unmodified	_EVEEISLLQPQVEESVLNLGK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.088084	2352.24242	0.41027	0.0003221	-0.7402	-0.00058112	-0.32993	-0.00025902	785.421636439009	18.993	0.062081	18.993	18.958	19.02	0	459	22	1.01763759082241	0.0140985132424494	1.01763759082241	614.967658122086	0	8.51985986947034						112	8	4	NaN	NaN	NaN	8.2164E-06	1	36068	83.474	71.099	1	17575			5412	92	4620	4729	5412	5412		
EVEEISLLQPQVEESVLNLGK	21	Unmodified	_EVEEISLLQPQVEESVLNLGK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1177.12849	2352.24242	0.22642	0.00026653	-0.46432	-0.00054657	-0.2379	-0.00028004	1177.62864602028	18.993	0.062081	18.993	18.958	19.02	0	66	25	1.27913350869533	0.0158281976076649	1.27913350869533	515.329309160369	0	6.37676527349475						92	8	3	NaN	NaN	NaN	1.6023E-07	1	36069	73.502	57.4	1	12813			5413	92	4620	4729	5413	5413		
EVEGDDVPESIMLEMK	16	Unmodified	_EVEGDDVPESIMLEMK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.91826	1819.82197	1.7871	0.0016279	1.759	0.0016023	3.5461	0.0032302	910.919559275487	15.171	0.23052	15.171	15.047	15.278	0	291	55	1.12999890578964	0.0359720544761399	1.12999890578964	456.028449450411	0	14.5170762044557						835	27	4	NaN	NaN	NaN	1.9709E-05	1	27713	104.49	93.519	1	216540			5414	1919	4621	4730	5414	5414		
EVEIAYSDVAK	11	Unmodified	_EVEIAYSDVAK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.311343	1222.60813	1.5459	0.00094658	1.2719	0.00077879	2.8178	0.0017254	612.311963401362	8.0591	0.14198	8.0591	8.0148	8.1567	0	543	37	0.961130371139249	0.0242643069631547	0.961130371139249	389.308582463718	0	9.82832634566881						328	17	4	NaN	NaN	NaN	0.00073231	1	10087	74.424	46.688	1	134340			5415	3454	4622	4731	5415	5415		
EVELNELEPEK	11	Unmodified	_EVELNELEPEK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.83264	1327.65073	1.2305	0.00081809	-0.084305	-5.6049E-05	1.1462	0.00076204	664.832767509886	9.3278	0.31925	9.3278	9.1504	9.4696	0	525	76	0.973257487423603	0.050498238560425	0.973257487423603	393.872321483566	0	20.4363785633726						1646	37	5	NaN	NaN	NaN	4.7879E-23	1	13210	211.84	146.53	1	1321600			5416	576	4623	4732	5416	5416		
EVEMDAVGK	9	Unmodified	_EVEMDAVGK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.23405	976.453547	0.60023	0.00029365	0.20533	0.00010045	0.80556	0.00039411	489.233777444526	4.6716	0.26602	4.6716	4.6095	4.8755	0	735	91	0.831145085810763	0.0611422032175672	0.831145085810763	337.603372946095	0	24.8353920248119						777	31	4	NaN	NaN	NaN	0.011181	1	3758	29.31	14.774	1	232320			5417	922	4624	4733	5417	5417		
EVENLILENTQLLETK	16	Unmodified	_EVENLILENTQLLETK_			0	0	0	O60271	O60271	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.509488	1885.00442	1.3378	0.0012623	-0.24276	-0.00022905	1.0951	0.0010332	943.509009015932	16.502	0.11526	16.502	16.457	16.573	0	195	55	1.19381749893585	0.0358191140303898	1.19381749893585	481.65740550635	0	14.4515736674929						434	14	4	NaN	NaN	NaN	1.9173E-06	1	29269	91.939	78.721	1	123290			5418	252	4625	4734	5418	5418		
EVEPALELLEPIDQK	15	Unmodified	_EVEPALELLEPIDQK_			0	0	0	P31150	P31150	P31150	GDI1	Rab GDP dissociation inhibitor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.961642	1721.90873	1.3403	0.0011552	-1.1536	-0.00099433	0.18669	0.00016092	861.960903005272	16.75	0.16846	16.75	16.67	16.839	0	321	73	1.10999792833052	0.0480685143957496	1.10999792833052	448.149361375982	0	19.407129940456						819	20	4	NaN	NaN	NaN	4.2095E-12	1	25112	121.71	115.68	1	261110			5419	920	4626	4735	5419	5419		
EVEPEPTEDK	10	Unmodified	_EVEPEPTEDK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.769508	1171.52446	1.4837	0.0008706	0.1692	9.928E-05	1.6529	0.00096988	586.769279938864	2.836	0.39016	2.836	2.7917	3.1818	0	669	40	0.875957769340875	0.0264453027366778	0.875957769340875	354.981840101318	0	10.7169575475838						554	45	4	NaN	NaN	NaN	0.00023757	1	8640	90.761	64.305	1	168270			5420	776	4627	4736	5420	5420		
EVEQFTQVAK	10	Unmodified	_EVEQFTQVAK_			0	0	0	O96000	O96000	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.806228	1177.5979	1.5398	0.00090821	2.1861	0.0012894	3.726	0.0021976	589.807963238914	6.2944	0.2838	6.2944	6.1968	6.4806	0	597	73	0.924688525662974	0.0486362780919285	0.924688525662974	374.707476204901	0	19.7086656858426						844	33	3	NaN	NaN	NaN	0.0014594	1	8825	84.368	64.135	1	287920			5421	467	4628	4737	5421	5421		
EVESMGAHLNAYSTR	15	Unmodified	_EVESMGAHLNAYSTR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.888486	1663.76242	2.9781	0.0024804	-4.2058	-0.003503	-1.2277	-0.0010225	832.88659245807	6.4096	0.20394	6.4096	6.3653	6.5693	0	411	97	1.04982941439551	0.0642328680497826	1.04982941439551	423.975273445269	0	25.9405455992688						707	24	5	NaN	NaN	NaN	0.045264	1	23441	46.358	43.256	1	213060			5422	927	4629	4738	5422	5422		
EVESMGAHLNAYSTR	15	Unmodified	_EVESMGAHLNAYSTR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.594749	1663.76242	0.6661	0.00037008	0.43825	0.00024349	1.1043	0.00061357	555.595313312603	6.4096	0.1596	6.4096	6.3476	6.5072	0	657	31	0.884090832094921	0.0203270164952024	0.884090832094921	535.559529321771	0	12.313584748855						307	19	4	NaN	NaN	NaN	0.0031234	1	23442	35.45	33.466	1	83782			5423	927	4629	4738	5423	5423		
EVESVDLPHCHLIK	14	Unmodified	_EVESVDLPHCHLIK_			0	0	0	Q15165	Q15165	Q15165	PON2	Serum paraoxonase/arylesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.287257	1674.83994	0.11759	6.5767E-05	0.58408	0.00032667	0.70167	0.00039243	559.287798112892	7.8906	0.17725	7.8906	7.802	7.9793	0	711	31	0.847456455381371	0.0203807147323261	0.847456455381371	513.339351773502	0	12.3454400788825						417	21	4	NaN	NaN	NaN	5.6463E-05	1	23765	92.445	90.143	1	115230			5424	1819	4630	4739	5424	5424		
EVEVEVESMDK	11	Unmodified	_EVEVEVESMDK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.297575	1292.5806	1.6351	0.0010584	2.3004	0.0014891	3.9355	0.0025475	647.298458457789	7.456	0.16846	7.456	7.4028	7.5713	0	570	40	0.942920803299286	0.0263172834355764	0.942920803299286	381.701842370596	0	10.6534456959693						336	20	3	NaN	NaN	NaN	2.1327E-08	1	12147	159.11	133.86	1	164160			5425	2108	4631	4740	5425	5425		
EVEVEVESMDK	11	Oxidation (M)	_EVEVEVESM(Oxidation (M))DK_	EVEVEVESM(1)DK	EVEVEVESM(50)DK	0	1	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.295033	1308.57551	2.3052	0.0015106	5.8459	0.0038308	8.1511	0.0053414	655.296193596346	4.9997	0.20392	4.9997	4.9199	5.1238	0	537	64	0.965173861991602	0.0424654908030729	0.965173861991602	390.659541919313	0	17.1881459266575						468	24	3	NaN	NaN	NaN	0.0057471	1	12609	50.297	32.827	1	101390			5426	2108	4631	4741	5426	5426	584	
EVFEDAAEIR	10	Unmodified	_EVFEDAAEIR_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.788035	1177.56152	1.6289	0.00096073	0.87235	0.0005145	2.5013	0.0014752	589.788473706222	8.7156	0.4526	8.7156	8.5914	9.044	0	603	67	0.920633820089869	0.0445956067149914	0.920633820089869	373.064544803015	0	18.0712888841283						1065	52	4	NaN	NaN	NaN	5.464E-10	1	8818	179.36	127.93	1	1452600			5427	764	4632	4742	5427	5427		
EVFEFRPELVNDDDEEADDTR	21	Unmodified	_EVFEFRPELVNDDDEEADDTR_			0	0	1	Q8WU90	Q8WU90	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.3735	2539.09867	1.6683	0.0014137	-0.85933	-0.00072817	0.80898	0.00068551	847.707100881599	12.946	0.088652	12.946	12.91	12.999	0	528	43	0.971237000454584	0.0282887809416775	0.971237000454584	586.673758298822	0	17.0877812778737						295	11	4	NaN	NaN	NaN	2.0265E-07	1	36980	94.119	93.244	1	59302			5428	2364	4633	4743	5428	5428		
EVFEMATR	8	Unmodified	_EVFEMATR_			0	0	0	P61586;P08134	P61586	P61586	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.73676	981.458967	0.13544	6.6603E-05	-0.49266	-0.00024226	-0.35721	-0.00017565	491.737663520993	7.1989	0.30156	7.1989	7.0392	7.3408	0	726	58	0.837263974740672	0.0387314421406671	0.837263974740672	340.064722962217	0	15.7312359528817						878	35	4	NaN	NaN	NaN	0.013463	1	3865	65.313	47.917	1	214920			5429	574	4634	4744	5429	5429		
EVFGSSLPSNWQDISLEDSR	20	Unmodified	_EVFGSSLPSNWQDISLEDSR_			0	0	0	Q8N5N7	Q8N5N7	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.53475	2265.05496	1.0751	0.0012186	-0.025416	-2.881E-05	1.0497	0.0011898	1134.03638447842	16.156	0.062083	16.156	16.129	16.191	0	135	52	1.23356193185193	0.0337248998180355	1.23356193185193	497.082076777604	0	13.5899485934184						238	8	3	NaN	NaN	NaN	0.0019462	1	35322	47.27	44.555	1	47449			5430	2261	4635	4745	5430	5430		
EVFLPSTPGLGMHVEVK	17	Unmodified	_EVFLPSTPGLGMHVEVK_			0	0	0	Q7Z7H5	Q7Z7H5	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.993962	1838.96006	0.8299	0.00050955	0.92866	0.00057019	1.7586	0.0010797	614.328675985718	13.469	0.079789	13.469	13.434	13.513	0	528	28	0.971237000454584	0.0181869004475753	0.971237000454584	587.88777273479	0	11.0084936962554						182	10	4	NaN	NaN	NaN	0.0012204	1	28200	54.309	33.697	1	38766			5431	2153	4636	4746	5431	5431		
EVFSMAGVVVR	11	Unmodified	_EVFSMAGVVVR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.320991	1192.62743	1.731	0.001034	-2.9795	-0.0017797	-1.2485	-0.00074574	597.319885873237	12.901	0.23944	12.901	12.822	13.061	0	582	70	0.934820374997243	0.0465742659792091	0.934820374997243	378.757903655732	0	18.8703325455885						624	28	4	NaN	NaN	NaN	0.0037111	1	9238	57.032	49.882	1	188660			5432	1206	4637	4747	5432	5432		
EVGDGTTSVVIIAAELLK	18	Unmodified	_EVGDGTTSVVIIAAELLK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.675175	1814.00369	-0.18567	-0.00011246	-1.1261	-0.00068202	-1.3117	-0.00079448	605.674126687991	20.075	0.035463	20.075	20.066	20.102	0	555	43	0.953040030838688	0.0283318814612601	0.953040030838688	576.932536691738	0	17.1509944092379						128	5	4	NaN	NaN	NaN	0.028707	1	27589	33.526	32.645	1	43704			5433	747	4638	4748	5433	5433		
EVGDGTTSVVIIAAELLK	18	Unmodified	_EVGDGTTSVVIIAAELLK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.009124	1814.00369	1.0805	0.00098109	0.88534	0.0008039	1.9658	0.001785	908.009712507617	20.075	0.070939	20.075	20.057	20.128	0	261	214	1.14997238118939	0.141200038674666	1.14997238118939	464.100314112421	0	56.9848314390139						560	9	5	NaN	NaN	NaN	2.2141E-10	1	27590	111.38	108.09	1	214290			5434	747	4638	4748	5434	5434		
EVGEAFTILSDPK	13	Unmodified	_EVGEAFTILSDPK_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.364107	1404.71366	1.2777	0.00089866	1.5064	0.0010595	2.7841	0.0019582	703.365296370773	13.194	0.22169	13.194	13.114	13.336	0	447	55	1.02569221487577	0.0362558355413685	1.02569221487577	414.857719290616	0	14.6642560268331						565	26	5	NaN	NaN	NaN	0.00047964	1	15611	86.243	72.969	1	193950			5435	2658	4639	4749	5435	5435		
EVGEHLVSIK	10	Unmodified	_EVGEHLVSIK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.811313	1109.60807	1.6039	0.00089146	0.78309	0.00043525	2.387	0.0013267	555.811283456904	6.0106	0.23945	6.0106	5.9485	6.1879	0	645	82	0.892219381832517	0.0547955099174173	0.892219381832517	361.806545192829	0	22.2202908152265						617	28	4	NaN	NaN	NaN	2.2476E-05	1	6988	127.94	82.456	1	293990			5436	326	4640	4750	5436	5436		
EVGETLLYYGCR	12	Unmodified	_EVGETLLYYGCR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.347934	1458.68131	1.6155	0.0011799	0.97329	0.00071084	2.5888	0.0018907	730.348810243463	11.403	0.18624	11.403	11.35	11.536	0	438	43	1.03173026378327	0.0281795132980842	1.03173026378327	417.149363965066	0	11.393545834389						596	22	4	NaN	NaN	NaN	5.5523E-05	1	17225	105.36	94.656	1	252780			5437	728	4641	4751	5437	5437		
EVGIEFMDLYSHLVPVYDVEPLEK	24	Unmodified	_EVGIEFMDLYSHLVPVYDVEPLEK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	941.138338	2820.39319	0.69797	0.00065689	-0.45743	-0.0004305	0.24054	0.00022639	941.471821318157	19.969	0.017719	19.969	19.969	19.986	0	435	25	1.03374239103424	0.0160959081053016	1.03374239103424	624.090880682284	0	9.71742046368888						80	3	5	NaN	NaN	NaN	0.00051601	1	37937	39.483	39.359	1	18921			5438	2064	4642	4752	5438	5438		
EVGNLYDMFHTR	12	Unmodified	_EVGNLYDMFHTR_			0	0	0	Q9Y3Z3	Q9Y3Z3	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.345726	1480.6769	1.0735	0.00079587	3.9239	0.002909	4.9975	0.0037049	741.348883867565	12.618	0.097544	12.618	12.573	12.671	0	411	28	1.04982941439551	0.0180891625147663	1.04982941439551	424.40795465341	0	7.31279230607731						204	12	3	NaN	NaN	NaN	0.0049533	1	17916	47.361	42.21	1	51060			5439	3402	4643	4753	5439	5439		
EVGSHFDDFVTNLIEK	16	Unmodified	_EVGSHFDDFVTNLIEK_			0	0	0	P35610	P35610	P35610	SOAT1	Sterol O-acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.303741	1848.88939	-0.13794	-8.5148E-05	-0.6186	-0.00038186	-0.75653	-0.00046701	617.303461254834	16.147	0.17736	16.147	16.094	16.271	0	693	73	0.85967808974117	0.048893360695647	0.85967808974117	520.340499728057	0	29.5938631463981						897	21	6	NaN	NaN	NaN	1.1096E-08	1	28458	133.07	101.02	1	681560			5440	974	4644	4754	5440	5440		
EVGSHFDDFVTNLIEK	16	Unmodified	_EVGSHFDDFVTNLIEK_			0	0	0	P35610	P35610	P35610	SOAT1	Sterol O-acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.451973	1848.88939	1.8814	0.0017412	2.2406	0.0020736	4.1221	0.0038148	925.953619691222	16.147	0.26604	16.147	16.023	16.289	0	255	46	1.15396378101328	0.029933448623392	1.15396378101328	465.644461970445	0	12.0786672931106						1296	31	8	NaN	NaN	NaN	9.4002E-05	1	28459	87.573	76.601	1	463150			5441	974	4644	4754	5441	5441		
EVGVYEALK	9	Unmodified	_EVGVYEALK_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.274032	1006.53351	0.55877	0.00028177	-1.6781	-0.00084624	-1.1194	-0.00056446	504.274463156604	7.864	0.2129	7.864	7.7309	7.9438	0	669	55	0.875957769340875	0.0366292905732287	0.875957769340875	355.658164233045	0	14.8722994400015						380	25	3	NaN	NaN	NaN	0.019542	1	4431	49.96	27.574	1	121890			5442	1022	4645	4755	5442	5442		
EVHTQAENAEFMR	13	Unmodified	_EVHTQAENAEFMR_			0	0	0	P09601	P09601	P09601	HMOX1	Heme oxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.240307	1560.69909	0.5353	0.00027902	0.33158	0.00017283	0.86688	0.00045185	521.240536339741	5.0795	0.0798	5.0795	5.0351	5.1149	0	744	22	0.82502364452135	0.0142853496956143	0.82502364452135	500.050302350024	0	8.65841055817515						146	10	4	NaN	NaN	NaN	1.5117E-05	1	20352	135.28	117.81	1	32746			5443	606	4646	4756	5443	5443		
EVHTQAENAEFMR	13	Unmodified	_EVHTQAENAEFMR_			0	0	0	P09601	P09601	P09601	HMOX1	Heme oxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.356822	1560.69909	2.7265	0.0021304	-1.607	-0.0012556	1.1196	0.0008748	781.356309401789	5.0706	0.088648	5.0706	5.044	5.1327	0	438	37	1.03173026378327	0.0241505321586708	1.03173026378327	416.893074391757	0	9.75854828848969						167	11	3	NaN	NaN	NaN	0.073033	1	20353	12.17	11.767	1	28987			5444	606	4646	4756	5444	5444		
EVIAVSCGPAQCQETIR	17	Unmodified	_EVIAVSCGPAQCQETIR_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.461492	1916.90843	2.7068	0.0025971	-2.6726	-0.0025643	0.0342	3.2814E-05	959.459395224419	8.3963	0.20401	8.3963	8.3253	8.5293	0	276	70	1.13998907770044	0.0459548181875775	1.13998907770044	459.88387397444	0	18.538668684901						1124	24	5	NaN	NaN	NaN	8.8731E-26	1	29988	196.42	185.45	1	343250			5445	1003	4647	4757	5445	5445		
EVIDLLKPDQVEGIQK	16	Unmodified	_EVIDLLKPDQVEGIQK_			0	0	1	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.675286	1823.00403	-0.014418	-8.7756E-06	-0.27946	-0.0001701	-0.29387	-0.00017887	609.00949962036	12.662	0.10641	12.662	12.609	12.715	0	657	79	0.884090832094921	0.0528576139489486	0.884090832094921	535.17340380763	0	31.996700053068						587	13	4	NaN	NaN	NaN	3.1612E-06	1	27814	103.76	89.397	1	126450			5446	2167	4648	4758	5446	5446		
EVIELPLTNPELFQR	15	Unmodified	_EVIELPLTNPELFQR_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.490901	1796.96725	1.9298	0.0017359	-1.2021	-0.0010813	0.7277	0.00065456	899.991284729594	17.708	0.25712	17.708	17.566	17.823	0	273	91	1.14198628764525	0.0599040020396771	1.14198628764525	460.910482743523	0	24.177507906254						1731	30	5	NaN	NaN	NaN	3.4482E-17	1	27141	168.05	119.26	1	714730			5447	1390	4649	4759	5447	5447		
EVIPVNVPEAQEEMK	15	Unmodified	_EVIPVNVPEAQEEMK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.432195	1710.84984	2.4517	0.0020997	-1.4052	-0.0012034	1.0466	0.00089632	856.431091846643	11.58	0.26609	11.58	11.465	11.731	0	369	109	1.07793901817685	0.0720929026950465	1.07793901817685	435.228396758033	0	29.1082129216053						1996	31	5	NaN	NaN	NaN	3.8485E-08	1	24786	140.01	120.69	1	1073300			5448	565	4650	4760	5448	5448		
EVIPVNVPEAQEEMK	15	Oxidation (M)	_EVIPVNVPEAQEEM(Oxidation (M))K_	EVIPVNVPEAQEEM(1)K	EVIPVNVPEAQEEM(64)K	0	1	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.429652	1726.84475	3.2051	0.0027706	-2.569	-0.0022207	0.63611	0.00054987	864.929156642974	9.8332	0.11526	9.8332	9.7889	9.9041	0	363	52	1.08195024817156	0.0340884182480441	1.08195024817156	436.815455082521	0	13.7625070609548						294	14	2	NaN	NaN	NaN	0.011595	1	25234	63.908	48.029	1	113800			5449	565	4650	4761	5449	5449	143	
EVIQEWNLTNIK	12	Unmodified	_EVIQEWNLTNIK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.898648	1485.78274	1.5463	0.0011503	-2.3283	-0.001732	-0.78196	-0.0005817	743.896732220228	13.487	0.14188	13.487	13.434	13.575	0	429	46	1.03776581230406	0.030165256192159	1.03776581230406	419.51775309208	0	12.1943316585897						398	17	3	NaN	NaN	NaN	0.00033037	1	18104	70.195	55.432	1	107460			5450	3406	4651	4762	5450	5450		
EVIYDMLNALAAYHAPEEADK	21	Unmodified	_EVIYDMLNALAAYHAPEEADK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.378981	2362.11511	0.59891	0.00047217	-1.2957	-0.0010215	-0.69675	-0.0005493	788.712273531187	18.71	0.05318	18.71	18.683	18.736	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	619.81993650613	0	17.0334223621195						241	7	4	NaN	NaN	NaN	3.8615E-06	1	36148	60.734	46.875	1	44589			5451	2149	4652	4763	5451	5451		
EVLCDFCLDDTR	12	Unmodified	_EVLCDFCLDDTR_			0	0	0	O95361	O95361	O95361	TRIM16	Tripartite motif-containing protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.831791	1541.64903	1.3908	0.0010735	0.92914	0.00071714	2.32	0.0017906	771.83248619157	12.361	0.088673	12.361	12.325	12.414	0	408	25	1.0518390438467	0.0160759277723759	1.0518390438467	425.064636727339	0	6.49653427356111						173	11	4	NaN	NaN	NaN	0.037554	1	19759	32.051	24.049	1	33913			5452	425	4653	4764	5452	5452		
EVLDEDTDEEK	11	Unmodified	_EVLDEDTDEEK_			0	0	0	Q9Y3P9	Q9Y3P9	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.285719	1320.55689	2.008	0.0013278	0.67292	0.00044499	2.6809	0.0017728	661.286152908028	4.1396	0.15953	4.1396	4.0953	4.2549	0	540	25	0.963152256458504	0.0161762030929075	0.963152256458504	389.804351291602	0	6.54678874571442						146	19	2	NaN	NaN	NaN	0.03952	1	12992	33.723	29.184	1	35969			5453	3397	4654	4765	5453	5453		
EVLDSFLDLAR	11	Unmodified	_EVLDSFLDLAR_			0	0	0	Q15758	Q15758	Q15758	SLC1A5	Neutral amino acid transporter B(0)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.340435	1276.66632	0.71344	0.00045613	-0.95648	-0.00061152	-0.24304	-0.00015539	639.339906698908	17.557	0.22168	17.557	17.477	17.699	0	549	70	0.957085760909907	0.0464969566450577	0.957085760909907	387.487005640708	0	18.8248192979806						980	26	5	NaN	NaN	NaN	2.5785E-11	1	11676	166.66	119.31	1	646460			5454	1866	4655	4766	5454	5454		
EVLDVAAGMIK	11	Unmodified	_EVLDVAAGMIK_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.315374	1144.6162	0.54067	0.00030997	-1.2708	-0.00072858	-0.73015	-0.00041861	573.315116742204	12.981	0.14188	12.981	12.937	13.079	0	624	52	0.906433495720521	0.0344912931175532	0.906433495720521	367.432607163952	0	13.9814181784674						307	17	4	NaN	NaN	NaN	0.0027596	1	7926	60.892	24.681	1	125010			5455	1236	4656	4767	5455	5455		
EVLEDFAEDGEK	12	Unmodified	_EVLEDFAEDGEK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.811904	1379.60926	0.87275	0.0006029	1.8264	0.0012617	2.6991	0.0018646	690.812907821469	9.514	0.15073	9.514	9.4608	9.6115	0	504	58	0.987393073566096	0.0383680338413804	0.987393073566096	399.437850307338	0	15.5213211115303						410	18	3	NaN	NaN	NaN	0.0010438	1	14792	44.57	24.336	1	109990			5456	255	4657	4768	5456	5456		
EVLGSLPNVFSALCLNAR	18	Unmodified	_EVLGSLPNVFSALCLNAR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.519667	1959.02478	1.4628	0.0014343	-4.8658	-0.004771	-3.4029	-0.0033366	981.016183544526	19.791	0.079818	19.791	19.756	19.836	0	204	31	1.18784641916898	0.0199104355287145	1.18784641916898	479.116004256602	0	8.03084317937333						216	10	4	NaN	NaN	NaN	1.3295E-05	1	30896	96.313	87.157	1	49092			5457	2149	4658	4769	5457	5457		
EVLHSYLR	8	Unmodified	_EVLHSYLR_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.779816	1015.54508	0.61574	0.00031328	1.1053	0.00056234	1.721	0.00087562	508.781022053924	5.3544	0.31923	5.3544	5.177	5.4962	0	660	49	0.882057989648486	0.0325096976674552	0.882057989648486	358.092114551034	0	13.1980737295891						392	37	3	NaN	NaN	NaN	0.00059109	1	4644	105.04	82.654	1	124880			5458	1590	4659	4770	5458	5458		
EVLLFPAMKPEDK	13	Unmodified	_EVLLFPAMKPEDK_			0	0	1	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.274177	1515.8007	-0.53865	-0.0002727	0.22425	0.00011353	-0.3144	-0.00015917	506.274510415228	12.192	0.18624	12.192	12.121	12.307	0	690	40	0.86171403876517	0.0264746954397943	0.86171403876517	522.424349926686	0	16.0505979158251						459	22	4	NaN	NaN	NaN	0.031676	1	19010	55.754	50.603	1	131890			5459	1801	4660	4771	5459	5459		
EVLLFPAMKPEDK	13	Unmodified	_EVLLFPAMKPEDK_			0	0	1	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.907627	1515.8007	1.8452	0.0014004	0.91455	0.00069406	2.7598	0.0020944	758.908416579497	12.192	0.23058	12.192	12.094	12.325	0	363	58	1.08195024817156	0.0381198356201773	1.08195024817156	437.29939998612	0	15.4071606087657						805	27	4	NaN	NaN	NaN	0.0043522	1	19012	71.066	49.022	1	282910			5460	1801	4660	4771	5460	5460		
EVLLQTFLDDTSPGDK	16	Unmodified	_EVLLQTFLDDTSPGDK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.446357	1776.87816	1.385	0.0012319	0.87997	0.00078268	2.265	0.0020146	889.446962200644	17.309	0.27488	17.309	17.193	17.468	0	300	79	1.12400150285141	0.051959655883187	1.12400150285141	453.691015147716	0	20.9729515170279						1293	32	5	NaN	NaN	NaN	3.446E-12	1	26598	139.7	70.429	1	399660		+	5461	22	4661	4772	5461	5461		
EVLLQTFLDDTSPGDKR	17	Unmodified	_EVLLQTFLDDTSPGDKR_			0	0	1	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.3337	1932.97927	0.34787	0.00022449	-0.91608	-0.00059118	-0.56821	-0.00036669	645.332558270975	15.42	0.15085	15.42	15.322	15.473	0	612	31	0.914549654013882	0.0202903977808542	0.914549654013882	553.373644073236	0	12.2772681728185						264	18	4	NaN	NaN	NaN	0.0001642	1	30387	66.485	52.708	1	54570		+	5462	22	4662	4773	5462	5462		
EVLPHVPLGVIQR	13	Unmodified	_EVLPHVPLGVIQR_			0	0	0	Q9Y679	Q9Y679	Q9Y679	AUP1	Ancient ubiquitous protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.935368	1455.85618	0.958	0.00069832	1.5353	0.0011191	2.4933	0.0018174	728.936402989289	12.094	0.10642	12.094	12.041	12.148	0	423	31	1.04178812298108	0.0201087800634321	1.04178812298108	421.223636887235	0	8.13053372834258						218	13	3	NaN	NaN	NaN	0.00030641	1	17139	69.915	55.92	1	51901			5463	3453	4663	4774	5463	5463		
EVLPLAFLGMHEIADEEK	18	Unmodified	_EVLPLAFLGMHEIADEEK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.015203	2040.02378	0.17027	0.00011596	0.67343	0.00045861	0.8437	0.00057457	681.350182586434	17.929	0.14186	17.929	17.885	18.027	0	492	37	0.995464410099171	0.0242106659523326	0.995464410099171	602.108245307968	0	14.6438601384494						358	17	5	NaN	NaN	NaN	0.00031634	1	32344	38.839	28.818	1	102810			5464	2013	4664	4775	5464	5464		
EVLQALEELAVNYDQK	16	Unmodified	_EVLQALEELAVNYDQK_			0	0	0	P33176;O60282;Q12840	P33176	P33176	KIF5B;KIF5C;KIF5A	Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.322913	1860.94691	0.13814	8.5829E-05	2.8149	0.0017489	2.953	0.0018348	621.325772463389	18.594	0.1064	18.594	18.541	18.648	0	570	22	0.942920803299286	0.014172805463205	0.942920803299286	570.697599157025	0	8.57801209059051						123	13	3	NaN	NaN	NaN	0.055364	1	28722	20.966	20.29	1	26881			5465	944	4665	4776	5465	5465		
EVLSLLQEK	9	Unmodified	_EVLSLLQEK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.808239	1057.60193	0.259	0.00013722	-1.622	-0.00085935	-1.363	-0.00072213	529.807293821496	11.261	0.088668	11.261	11.225	11.314	0	651	28	0.888155670855968	0.0182879696480781	0.888155670855968	360.375857991976	0	7.42048153169554						145	11	2	NaN	NaN	NaN	0.048758	1	5665	23.053	14.29	1	48437			5466	2083	4666	4777	5466	5466		
EVLSMDDEIQK	11	Unmodified	_EVLSMDDEIQK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.813393	1305.61223	1.6417	0.0010734	4.2141	0.0027552	5.8558	0.0038286	653.81487124631	8.7245	0.51451	8.7245	8.3785	8.8931	0	534	124	0.967195187796614	0.0827714115764886	0.967195187796614	391.486974245765	0	33.5029887255234						1225	59	4	NaN	NaN	NaN	0.024386	1	12516	51.872	7.2749	1	441240			5467	1558	4667	4778	5467	5467		
EVLTGNDEVIGQVLSTLK	18	Unmodified	_EVLTGNDEVIGQVLSTLK_			0	0	0	Q15904	Q15904	Q15904	ATP6AP1	V-type proton ATPase subunit S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.022763	1914.03097	1.1689	0.0011198	-2.3254	-0.0022278	-1.1565	-0.001108	959.018492397028	18.656	0.14187	18.656	18.585	18.727	0	216	52	1.17988115188462	0.0338640233307155	1.17988115188462	475.981907701138	0	13.6612593578967						385	17	3	NaN	NaN	NaN	0.03154	1	29937	42.495	33.233	1	107910			5468	1874	4668	4779	5468	5468		
EVMILITGAHK	11	Unmodified	_EVMILITGAHK_			0	0	0	P46926;Q8TDQ7	P46926	P46926	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.344466	1210.67438	1.0433	0.00063261	0.33945	0.00020582	1.3828	0.00083843	606.344716888512	9.106	0.18622	9.106	9.0617	9.2479	0	519	28	0.97729762293174	0.0181793540549698	0.97729762293174	395.900734287149	0	7.36440921409184						249	22	4	NaN	NaN	NaN	4.6225E-05	1	9762	98.009	92.143	1	62173			5469	1092	4669	4780	5469	5469		
EVMLILIR	8	Unmodified	_EVMLILIR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.806988	985.599423	-0.68685	-0.00033917	-1.1271	-0.00055658	-1.814	-0.00089575	493.806472625017	15.083	0.097535	15.083	15.038	15.136	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	349.148214018802	0	7.44292653118703						160	12	3	NaN	NaN	NaN	0.0063117	1	3976	69.093	51.399	1	39284			5470	343	4670	4781	5470	5470		
EVMLVGIGDK	10	Unmodified	_EVMLVGIGDK_			0	0	0	P36542	P36542	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.788992	1059.56343	0.22522	0.00011954	-0.92314	-0.00048999	-0.69792	-0.00037045	530.788773121785	10.436	0.12416	10.436	10.392	10.516	0	690	40	0.86171403876517	0.0264636674362559	0.86171403876517	349.638643233616	0	10.7375769236129						256	15	3	NaN	NaN	NaN	0.00015055	1	5718	78.816	64.281	1	73083			5471	985	4671	4782	5471	5471		
EVMNADDPDLQRPDEEAIK	19	Unmodified	_EVMNADDPDLQRPDEEAIK_			0	0	1	Q13573	Q13573	Q13573	SNW1	SNW domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.007435	2184.00048	1.3289	0.00096876	1.1902	0.00086766	2.5191	0.0018364	729.342847171108	8.068	0.1154	8.068	8.0059	8.1213	0	576	40	0.938871150116794	0.0263282200540531	0.938871150116794	567.624828234077	0	15.9175744020165						360	14	4	NaN	NaN	NaN	2.0796E-05	1	34503	111.98	95.847	1	97439			5472	1687	4672	4783	5472	5472		
EVMPLLLAYLK	11	Unmodified	_EVMPLLLAYLK_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.380517	1288.74648	0.63221	0.00040801	-0.31656	-0.0002043	0.31565	0.00020371	645.380353891763	19.446	0.088611	19.446	19.401	19.49	0	519	58	0.97729762293174	0.0383786491892638	0.97729762293174	395.630308349076	0	15.5364716504891						304	11	3	NaN	NaN	NaN	0.0035687	1	12035	34.781	30.888	1	73636			5473	2356	4673	4784	5473	5473		
EVMQEVAQLSQFDEELYK	18	Unmodified	_EVMQEVAQLSQFDEELYK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.51973	2185.0249	0.74519	0.00081488	-5.5866	-0.0061091	-4.8414	-0.0052942	1093.51039921599	17.513	0.15962	17.513	17.459	17.619	0	132	88	1.23554629282893	0.0575228630008287	1.23554629282893	497.992898129396	0	23.1848676336477						977	19	4	NaN	NaN	NaN	5.7238E-07	1	34519	88.796	81.484	1	274250			5474	1139	4674	4785	5474	5474		
EVMQEVAQLSQFDEELYK	18	Unmodified	_EVMQEVAQLSQFDEELYK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.34891	2185.0249	0.24201	0.00017651	0.71363	0.00052048	0.95564	0.00069699	729.683824217153	17.521	0.070939	17.521	17.495	17.566	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	585.96919409389	0	14.6616081303758						274	9	5	NaN	NaN	NaN	0.039709	1	34521	33.526	28.972	1	60888			5475	1139	4674	4785	5475	5475		
EVMYAYVDQHDFSGK	15	Unmodified	_EVMYAYVDQHDFSGK_			0	0	0	Q9Y6D6	Q9Y6D6	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.898519	1787.78249	1.8989	0.0016993	0.78758	0.0007048	2.6865	0.0024041	895.401318427751	9.6026	0.053202	9.6026	9.576	9.6292	0	240	25	1.16393748060522	0.0159524375137323	1.16393748060522	469.788551230074	0	6.43872427260243						106	7	3	NaN	NaN	NaN	3.1444E-06	1	26908	78.157	77.007	1	18988			5476	3460	4675	4786	5476	5476		
EVNEGIQALSNSEEEK	16	Unmodified	_EVNEGIQALSNSEEEK_			0	0	0	Q8N3X1	Q8N3X1	Q8N3X1	FNBP4	Formin-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.418327	1774.8221	2.954	0.0026244	-0.67045	-0.00059564	2.2835	0.0020287	888.417337036289	7.7842	0.12416	7.7842	7.7487	7.8729	0	366	31	1.07994477139643	0.0200506245124248	1.07994477139643	435.911908637291	0	8.09328979784681						186	15	3	NaN	NaN	NaN	7.5097E-07	1	26533	95.345	88.599	1	41179			5477	2250	4676	4787	5477	5477		
EVNEQTHFASMPR	13	Unmodified	_EVNEQTHFASMPR_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.359364	1544.70418	2.7486	0.0021257	-1.1455	-0.00088587	1.6031	0.0012398	773.358575172879	5.6559	0.053252	5.6559	5.6292	5.6825	0	405	31	1.05384839605172	0.0200921384005985	1.05384839605172	425.869158412228	0	8.1194051283112						140	7	3	NaN	NaN	NaN	0.0031685	1	19870	56.938	49.798	1	29060			5478	156	4677	4788	5478	5478		
EVNEVIQNPATITR	14	Unmodified	_EVNEVIQNPATITR_			0	0	0	Q9Y4X5	Q9Y4X5	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.423019	1582.83148	1.8545	0.0014695	-0.45824	-0.00036312	1.3962	0.0011064	792.422644138155	9.0972	0.12415	9.0972	9.0174	9.1415	0	408	34	1.0518390438467	0.0221028774104899	1.0518390438467	424.966194827586	0	8.93005043197985						197	15	2	NaN	NaN	NaN	2.16E-11	1	21064	112.73	101.37	1	42206			5479	3417	4678	4789	5479	5479		
EVPEHITEEELK	12	Unmodified	_EVPEHITEEELK_			0	0	0	Q7L0Y3	Q7L0Y3	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.864471	1451.71439	1.6675	0.001212	-0.79237	-0.00057595	0.87508	0.00063606	726.864052881336	6.321	0.23943	6.321	6.2589	6.4983	0	456	34	1.01965166402748	0.0221548084259287	1.01965166402748	412.284338015202	0	8.9580401307436						483	28	4	NaN	NaN	NaN	0.00022504	1	17028	83.775	58.954	1	118410			5480	2111	4679	4790	5480	5480		
EVPIPEHIDIYHLTR	15	Unmodified	_EVPIPEHIDIYHLTR_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.328221	1830.96283	0.75228	0.00045989	-1.9111	-0.0011683	-1.1588	-0.00070841	611.661223320944	12.751	0.1685	12.751	12.68	12.848	0	645	40	0.892219381832517	0.0264122944165538	0.892219381832517	540.076220032105	0	15.9878303714602						631	20	5	NaN	NaN	NaN	3.1443E-06	1	28006	91.245	74.957	1	323050			5481	3202	4680	4791	5481	5481		
EVPIPEHIDIYHLTR	15	Unmodified	_EVPIPEHIDIYHLTR_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	458.747985	1830.96283	-0.89438	-0.0004103	0.79567	0.00036501	-0.098718	-4.5287E-05	458.748828264415	12.751	0.062089	12.751	12.724	12.786	0	729	22	0.835224628594324	0.0142754238517586	0.835224628594324	674.098915796694	0	11.5215085996737						115	8	3	NaN	NaN	NaN	0.036006	1	28007	12.17	6.7827	1	26906			5482	3202	4680	4791	5482	5482		
EVPIPEHIDIYHLTR	15	Unmodified	_EVPIPEHIDIYHLTR_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.488693	1830.96283	2.326	0.0021318	-1.9737	-0.0018089	0.3523	0.00032288	916.486154769341	12.751	0.10643	12.751	12.697	12.804	0	255	46	1.15396378101328	0.029933448623392	1.15396378101328	465.678424074681	0	12.0795482591505						374	13	4	NaN	NaN	NaN	0.0042786	1	28008	31.801	19.782	1	96012			5483	3202	4680	4791	5483	5483		
EVQETTVTEGAAK	13	Unmodified	_EVQETTVTEGAAK_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.840996	1361.66744	2.1552	0.0014695	-1.3444	-0.00091669	0.81078	0.00055283	681.840096939884	3.5987	0.14184	3.5987	3.5721	3.714	4.4409E-16	546	34	0.959108205975751	0.0222468989208282	0.959108205975751	388.046283776928	0	9.00088894871431						247	17	3	NaN	NaN	NaN	2.2833E-07	1	14249	92.707	46.674	1	74994			5484	3104	4681	4792	5484	5484		
EVQLAQIFEPLSR	13	Unmodified	_EVQLAQIFEPLSR_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.419748	1528.82494	1.167	0.00089324	-0.22727	-0.00017396	0.93972	0.00071928	765.419475770766	17.495	0.16847	17.495	17.442	17.61	0	429	40	1.03776581230406	0.0261468289709272	1.03776581230406	419.408735907785	0	10.5671321570579						401	20	4	NaN	NaN	NaN	1.8021E-07	1	19396	102.03	82.705	1	128370			5485	1921	4682	4793	5485	5485		
EVQLEELEAAR	11	Unmodified	_EVQLEELEAAR_			0	0	0	P51570	P51570	P51570	GALK1	Galactokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.832974	1285.6514	1.2644	0.00081409	4.0658	0.0026177	5.3303	0.0034318	644.336998166247	9.9573	0.079793	9.9573	9.9218	10.002	0	525	46	0.973257487423603	0.0302947379404193	0.973257487423603	394.004817672376	0	12.2642495463814						219	10	3	NaN	NaN	NaN	0.041488	1	11930	26.579	11.431	1	56875			5486	1189	4683	4794	5486	5486		
EVQMHSFPLQFTLHCALLANK	21	Unmodified	_EVQMHSFPLQFTLHCALLANK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	621.818615	2483.24536	-0.22379	-0.00013915	-1.0852	-0.00067483	-1.309	-0.00081398	622.068270122714	15.5	0.062063	15.5	15.464	15.526	0	693	19	0.85967808974117	0.0122165429228538	0.85967808974117	692.465630572227	0	9.84035326645767						158	8	5	NaN	NaN	NaN	0.00078393	1	36744	54.912	52.318	1	32641			5487	1055	4684	4795	5487	5487		
EVQMHSFPLQFTLHCALLANK	21	Unmodified	_EVQMHSFPLQFTLHCALLANK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.755728	2483.24536	1.8676	0.0015478	-1.5809	-0.0013102	0.28675	0.00023765	829.088815028497	15.5	0.053209	15.5	15.473	15.526	0	441	43	1.02971785871157	0.0281756225975058	1.02971785871157	622.075151286074	0	17.0215118069855						222	7	4	NaN	NaN	NaN	0.032499	1	36745	11.918	11.866	1	35665			5488	1055	4684	4795	5488	5488		
EVQQGEEFER	10	Unmodified	_EVQQGEEFER_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.786024	1249.55749	2.7061	0.0016935	2.3229	0.0014537	5.0291	0.0031471	625.787765430011	4.0243	0.27488	4.0243	3.98	4.2549	0	555	64	0.953040030838688	0.0425243253207723	0.953040030838688	385.938606596948	0	17.2204506943236						732	32	3	NaN	NaN	NaN	3.6856E-07	1	10899	115.86	94.586	1	185820			5489	485	4685	4796	5489	5489		
EVSDFIQDSGQIK	13	Unmodified	_EVSDFIQDSGQIK_			0	0	0	O75391	O75391	O75391	SPAG7	Sperm-associated antigen 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.362096	1464.70964	1.6117	0.001182	1.5594	0.0011436	3.1712	0.0023256	733.364332401285	10.152	0.20394	10.152	10.073	10.277	0	450	49	1.02367897599655	0.0322051603576423	1.02367897599655	413.878058008478	0	13.020692560084						387	24	3	NaN	NaN	NaN	0.0088063	1	17412	65.879	21.309	1	134750			5490	330	4686	4797	5490	5490		
EVSDGIIAPGYEEEALTILSK	21	Unmodified	_EVSDGIIAPGYEEEALTILSK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1117.57556	2233.13656	0.62187	0.00069499	0.31398	0.0003509	0.93585	0.0010459	1118.07710373071	18.683	0.12414	18.683	18.648	18.772	0	69	73	1.27715511956461	0.0475171415249036	1.27715511956461	514.693447372727	0	19.1494055859774						808	15	6	NaN	NaN	NaN	3.4169E-08	1	35019	121.39	112.24	1	343710			5491	929	4687	4798	5491	5491		
EVSEEQPVVTLEK	13	Unmodified	_EVSEEQPVVTLEK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.885403	1485.75625	1.7587	0.0013083	-2.478	-0.0018433	-0.71925	-0.00053504	743.883636195094	8.0237	0.13317	8.0237	7.9881	8.1213	0	453	61	1.02166545906632	0.0403009640013746	1.02166545906632	413.009239490162	0	16.291703262768						555	16	5	NaN	NaN	NaN	3.6838E-11	1	18100	139.78	123.9	1	153290			5492	1126	4688	4799	5492	5492		
EVSFQSTGESEWK	13	Unmodified	_EVSFQSTGESEWK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.343903	1512.67325	2.1973	0.0016641	1.7498	0.0013252	3.947	0.0029893	757.345413915607	8.6623	0.45259	8.6623	8.5825	9.0351	0	456	67	1.01965166402748	0.0443126963387586	1.01965166402748	412.127452442062	0	17.9105073793506						1931	52	6	NaN	NaN	NaN	1.3948E-16	1	18877	187.51	153.32	1	1838400			5493	1566	4689	4800	5493	5493		
EVSQPDWTPPPEVTLVLTK	19	Unmodified	_EVSQPDWTPPPEVTLVLTK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.56479	2135.11504	0.83882	0.00089633	0.68971	0.000737	1.5285	0.0016333	1069.06715940813	17.211	0.25716	17.211	17.105	17.362	0	126	106	1.23951419873743	0.0694527340669986	1.23951419873743	499.665933757943	0	27.9973922484936						2554	30	5	NaN	NaN	NaN	1.262E-10	1	33819	142.73	121.37	1	836200			5494	680	4690	4801	5494	5494		
EVSQVDTICECLLEHEEQVLR	21	Unmodified	_EVSQVDTICECLLEHEEQVLR_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	862.743994	2585.21015	0.79838	0.0006888	1.731	0.0014934	2.5294	0.0021822	863.080366052515	16.856	0.062091	16.856	16.83	16.892	0	363	43	1.08195024817156	0.0280902306383146	1.08195024817156	653.486406062133	0	16.9661995977268						224	8	4	NaN	NaN	NaN	8.8672E-08	1	37178	70.552	67.784	1	37845			5495	2369	4691	4802	5495	5495		
EVSSSFDHVIK	11	Unmodified	_EVSSSFDHVIK_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.31696	1246.61937	1.9395	0.0012109	-0.89905	-0.00056129	1.0405	0.00064959	624.317980459499	6.4806	0.25715	6.4806	6.3831	6.6402	0	537	76	0.965173861991602	0.0505821658502509	0.965173861991602	390.862346772742	0	20.4840441993333						801	30	3	NaN	NaN	NaN	1.5765E-05	1	10821	92.732	45.383	1	393180			5496	3458	4692	4803	5496	5496		
EVSSWTVEGDINTDPWAGYR	20	Unmodified	_EVSSWTVEGDINTDPWAGYR_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1141.52165	2281.02874	1.1427	0.0013044	1.6702	0.0019066	2.8129	0.0032109	1142.02403372308	15.482	0.044325	15.482	15.464	15.508	0	129	46	1.23753038177212	0.0297491054842223	1.23753038177212	498.659923105295	0	11.9873312782597						171	6	3	NaN	NaN	NaN	0.024012	1	35464	20.966	20.661	1	26571			5497	1236	4693	4804	5497	5497		
EVSTYIK	7	Unmodified	_EVSTYIK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.229094	838.443634	-0.24946	-0.00010483	-1.0389	-0.00043656	-1.2883	-0.00054139	420.228747815057	4.4677	0.28376	4.4677	4.3701	4.6539	0	810	52	0.78005493425781	0.034794520890943	0.78005493425781	317.574279187305	0	14.165470156435						524	33	3	NaN	NaN	NaN	0.06995	1	1416	26.223	9.6757	1	149400			5498	1446	4694	4805	5498	5498		
EVTDMNLNVINEGGIDK	17	Unmodified	_EVTDMNLNVINEGGIDK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.954023	1859.89349	2.864	0.0026663	-0.80059	-0.00074531	2.0634	0.001921	930.953865467693	12.919	0.24829	12.919	12.866	13.114	0	273	43	1.14198628764525	0.0279590228132265	1.14198628764525	460.791042590139	0	11.2814553128069						610	29	5	NaN	NaN	NaN	5.4144E-19	1	28695	180.17	149.82	1	195000			5499	2633	4695	4806	5499	5499		
EVTDTQMPLVAPVILPEMYK	20	Unmodified	_EVTDTQMPLVAPVILPEMYK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.59164	2273.16873	0.33242	0.00037816	-0.66238	-0.00075351	-0.32996	-0.00037535	1138.09227139053	18.914	0.12412	18.914	18.851	18.976	0	84	61	1.26725910986255	0.0395976097683282	1.26725910986255	510.649742158718	0	15.9560969504424						636	15	4	NaN	NaN	NaN	2.0919E-05	1	35397	49.967	48.872	1	150060			5500	2594	4696	4807	5500	5500		
EVTFSFIPR	9	Unmodified	_EVTFSFIPR_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.295299	1094.57605	0.0064737	3.5495E-06	0.11827	6.4845E-05	0.12474	6.8395E-05	548.295386305135	14.143	0.24828	14.143	14.028	14.276	0	642	55	0.894250814548268	0.0365784873736561	0.894250814548268	362.691410513178	0	14.8355505683173						610	29	3	NaN	NaN	NaN	0.063655	1	6575	39.324	29.81	1	154110			5501	253	4697	4808	5501	5501		
EVTMELTK	8	Unmodified	_EVTMELTK_			0	0	0	Q9BSA4	Q9BSA4	Q9BSA4	TTYH2	Protein tweety homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.746793	949.479033	-0.53445	-0.00025426	-4.5694	-0.0021739	-5.1039	-0.0024282	475.744201635411	8.9819	0.31051	8.9819	8.8399	9.1504	0	744	67	0.82502364452135	0.0449186931680692	0.82502364452135	335.249110434211	0	18.2527519380359						798	36	4	NaN	NaN	NaN	0.010518	1	3233	76.833	54.905	1	332850			5502	2720	4698	4809	5502	5502		
EVTPEGLQMVK	11	Unmodified	_EVTPEGLQMVK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.823563	1229.63257	1.4726	0.00090683	-1.2799	-0.0007882	0.19264	0.00011863	615.823076612414	8.9642	0.23073	8.9642	8.8665	9.0972	0	561	70	0.948993180460448	0.0465678161731256	0.948993180460448	384.367875287546	0	18.8612235870448						644	27	3	NaN	NaN	NaN	0.00079742	1	10297	76.605	65.903	1	540000			5503	802	4699	4810	5503	5503		
EVTPEGLQMVK	11	Oxidation (M)	_EVTPEGLQM(Oxidation (M))VK_	EVTPEGLQM(1)VK	EVTPEGLQM(53)VK	0	1	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.821021	1245.62749	1.6229	0.0010124	-0.15912	-9.9263E-05	1.4638	0.00091313	624.321752522379	6.4983	0.19506	6.4983	6.4274	6.6225	0	564	40	0.946969335010767	0.0263099961420051	0.946969335010767	383.493478847195	0	10.6547398906418						367	23	2	NaN	NaN	NaN	0.027862	1	10787	52.591	31.316	1	157960			5504	802	4699	4811	5504	5504	264	
EVTPESGPPK	10	Unmodified	_EVTPESGPPK_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.766571	1039.51859	-0.20984	-0.00010928	5.7167	0.0029771	5.5069	0.0028678	520.769540366513	17.672	0.133	17.672	17.628	17.761	0	669	46	0.875957769340875	0.0305180491511973	0.875957769340875	355.505895811845	0	12.3856957283341						374	16	4	NaN	NaN	NaN	0.066235	1	5216	33.396	18.86	1	120770			5505	1077	4700	4812	5505	5505		
EVTVPVFYPTEK	12	Unmodified	_EVTVPVFYPTEK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.871568	1407.72858	2.0429	0.00144	-3.5076	-0.0024724	-1.4646	-0.0010324	704.869412879286	12.804	0.23058	12.804	12.724	12.955	0	456	106	1.01965166402748	0.0705608725063336	1.01965166402748	412.405930802546	0	28.5388857105127						1130	27	4	NaN	NaN	NaN	0.018178	1	15703	37.749	27.047	1	328200			5506	1061	4701	4813	5506	5506		
EVTWEVLEGEVEK	13	Unmodified	_EVTWEVLEGEVEK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.885403	1545.75625	1.614	0.0012491	-0.50187	-0.00038839	1.1122	0.0008607	773.884679225151	14.631	0.23055	14.631	14.568	14.799	0	435	52	1.03374239103424	0.0342014530242964	1.03374239103424	417.741621569664	0	13.8210163095992						816	27	4	NaN	NaN	NaN	3.8599E-18	1	19913	195.8	155.3	1	406740			5507	533	4702	4814	5507	5507		
EVVAGSHELGQDYEHVTMLQER	22	Unmodified	_EVVAGSHELGQDYEHVTMLQER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	632.552502	2526.1809	0.98578	0.00062356	0.42613	0.00026955	1.4119	0.00089311	632.803589225122	9.8776	0.070933	9.8776	9.8509	9.9218	0	639	25	0.896281965493857	0.0162503358179286	0.896281965493857	721.881606711901	0	13.0883125863081						256	9	5	NaN	NaN	NaN	2.2498E-06	1	36949	70.638	61.483	1	81319			5508	1511	4703	4815	5508	5508		
EVVAGSHELGQDYEHVTMLQER	22	Unmodified	_EVVAGSHELGQDYEHVTMLQER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	843.067577	2526.1809	1.8601	0.0015682	-0.14574	-0.00012287	1.7144	0.0014453	843.401541044513	9.8776	0.05321	9.8776	9.8509	9.9041	0	477	46	1.0055473068722	0.0302361592844221	1.0055473068722	607.415734008493	0	18.2645995467612						218	7	3	NaN	NaN	NaN	0.025632	1	36950	14.191	14.127	1	44287			5509	1511	4703	4815	5509	5509		
EVVDYIIFGTVIQEVK	16	Unmodified	_EVVDYIIFGTVIQEVK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.008265	1851.00297	-0.0045186	-2.7925E-06	-2.2964	-0.0014192	-2.301	-0.001422	618.006789083302	19.543	0.04433	19.543	19.516	19.561	0	570	16	0.942920803299286	0.0101220303436548	0.942920803299286	570.720280770043	0	6.12654634353203						44	6	2	NaN	NaN	NaN	0.07096	1	28531	12.683	9.3947	1	9002.7			5510	1267	4704	4816	5510	5510		
EVVEAHVDQK	10	Unmodified	_EVVEAHVDQK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.296027	1152.5775	1.6246	0.00093786	-0.61311	-0.00035395	1.0115	0.00058391	577.295711668027	2.6321	0.17738	2.6321	2.6055	2.7828	0	624	34	0.906433495720521	0.0223209853619647	0.906433495720521	367.402392170547	0	9.04730844160923						223	21	3	NaN	NaN	NaN	0.00072527	1	8130	76.572	58.236	1	60735			5511	0	4705	4817	5511	5511		
EVVECQSTSTVGGQSVK	17	Unmodified	_EVVECQSTSTVGGQSVK_			0	0	0	Q96T23	Q96T23	Q96T23	RSF1	Remodeling and spacing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.930548	1793.84654	3.1019	0.0027853	-2.2307	-0.0020031	0.87111	0.0007822	897.928120676019	4.7691	0.053209	4.7691	4.7514	4.8046	0	345	25	1.09397730668811	0.0160316600123953	1.09397730668811	441.539741216828	0	6.4705318564412						82	7	3	NaN	NaN	NaN	5.3196E-10	1	27071	137.58	131.55	1	15730			5512	2627	4706	4818	5512	5512		
EVVEQGLLK	9	Unmodified	_EVVEQGLLK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.795132	1013.57571	0.23339	0.00011852	-4.1039	-0.002084	-3.8705	-0.0019654	508.293014799565	7.456	0.19504	7.456	7.3408	7.5358	0	684	34	0.86578508874114	0.0223892235225879	0.86578508874114	351.494904035274	0	9.08966679587763						266	23	2	NaN	NaN	NaN	0.022642	1	4598	56.014	15.811	1	99065			5513	2698	4707	4819	5513	5513		
EVVHTVSLHEIDVINSR	17	Unmodified	_EVVHTVSLHEIDVINSR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	487.512811	1946.02214	0.013085	6.3789E-06	1.3802	0.00067284	1.3932	0.00067922	487.764205937237	10.241	0.11529	10.241	10.206	10.321	0	678	46	0.869855008346864	0.0305307631752075	0.869855008346864	701.737139316242	0	24.6300477736268						290	14	3	NaN	NaN	NaN	0.013473	1	30649	72.846	72.227	1	149430			5514	3325	4708	4820	5514	5514		
EVVQNFAK	8	Unmodified	_EVVQNFAK_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.753267	933.491981	0.22553	0.00010549	0.020994	9.8202E-06	0.24652	0.00011531	467.753864558674	4.6893	0.2128	4.6893	4.6273	4.8401	0	729	52	0.835224628594324	0.0346833569079855	0.835224628594324	339.477195356857	0	14.0970564391757						437	25	3	NaN	NaN	NaN	0.011929	1	2938	69.093	41.389	1	156960			5515	1715	4709	4821	5515	5515		
EVVVYLDDNQKPPVGEGLNR	20	Unmodified	_EVVVYLDDNQKPPVGEGLNR_			0	0	1	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.721847	2240.14371	0.74862	0.00055976	1.9391	0.0014499	2.6877	0.0020097	748.057421907394	10.596	0.10638	10.596	10.569	10.676	0	558	31	0.951016745717027	0.0202370558589571	0.951016745717027	574.876831337578	0	12.2330280725261						214	13	3	NaN	NaN	NaN	2.308E-07	1	35102	90.376	87.123	1	45144			5516	1227	4710	4822	5516	5516		
EVWDYVFFK	9	Unmodified	_EVWDYVFFK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.802957	1231.59136	0.34868	0.00021507	0.33676	0.00020771	0.68544	0.00042278	616.803012060063	17.442	0.16849	17.442	17.38	17.548	0	585	49	0.932794566565362	0.0324241729460041	0.932794566565362	377.800321631316	0	13.1324338784851						567	20	4	NaN	NaN	NaN	0.0044652	1	10349	45.489	34.787	1	285130			5517	3161	4711	4823	5517	5517		
EVWFFGLQYQDTK	13	Unmodified	_EVWFFGLQYQDTK_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.903931	1659.79331	1.8621	0.0015472	0.88129	0.00073227	2.7434	0.0022795	831.406795666497	17.681	0.133	17.681	17.646	17.779	0	369	46	1.07793901817685	0.0300987514489623	1.07793901817685	435.335961233165	0	12.1556680600669						365	16	4	NaN	NaN	NaN	0.00035573	1	23326	65.879	49.591	1	80351			5518	846	4712	4824	5518	5518		
EVWNTYELDLVNYQNK	16	Unmodified	_EVWNTYELDLVNYQNK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.48909	2026.96362	1.9774	0.002006	0.89926	0.00091229	2.8766	0.0029183	1014.99052061705	15.464	0.23068	15.464	15.367	15.597	0	186	79	1.1997861197946	0.0517174377337057	1.1997861197946	483.817723342611	0	20.8552279182213						931	27	5	NaN	NaN	NaN	1.032E-08	1	32096	126.48	118.51	1	230170			5519	1737	4713	4825	5519	5519		
EVWYFGLHYVDNK	13	Unmodified	_EVWYFGLHYVDNK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.404098	1668.79364	2.885	0.0024101	3.127	0.0026123	6.0119	0.0050224	835.907760624555	13.877	0.21282	13.877	13.824	14.036	0	318	46	1.11199926528787	0.0300159293461491	1.11199926528787	449.071456186469	0	12.1216780631378						654	25	5	NaN	NaN	NaN	4.8642E-11	1	23594	159.12	137.97	1	214620			5520	710	4714	4826	5520	5520		
EVYELLDSPGK	11	Unmodified	_EVYELLDSPGK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.319168	1248.62378	1.8026	0.0011272	1.2588	0.00078715	3.0614	0.0019144	625.320181265833	10.135	0.31034	10.135	9.975	10.285	0	555	79	0.953040030838688	0.0526090972687659	0.953040030838688	385.941765104504	0	21.3045068448953						723	36	2	NaN	NaN	NaN	1.7324E-08	1	10876	135.63	107.54	1	516360			5521	802	4715	4827	5521	5521		
EVYLHAIVR	9	Unmodified	_EVYLHAIVR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.316566	1098.61858	1.1374	0.00062592	-1.3871	-0.00076335	-0.24974	-0.00013744	550.315730822986	7.3496	0.25714	7.3496	7.2964	7.5536	0	618	46	0.910492137470517	0.0304292729379168	0.910492137470517	369.261701149719	0	12.3409798145216						429	30	3	NaN	NaN	NaN	0.0086217	1	6678	65.313	55.919	1	173130			5522	858	4716	4828	5522	5522		
EVYPHVSTIINICLK	15	Unmodified	_EVYPHVSTIINICLK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.99044	1784.94949	-2.6114	-0.0015563	0.41061	0.00024472	-2.2007	-0.0013116	596.325408430198	14.099	0.053186	14.099	14.081	14.134	0	783	13	0.798467866007927	0.00817840038335205	0.798467866007927	483.420313353782	0	4.95148902587579						52	7	2	NaN	NaN	NaN	0.017582	1	26835	24.689	19.302	1	11059			5523	2175	4717	4829	5523	5523		
EWAHATIIPK	10	Unmodified	_EWAHATIIPK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.321848	1164.62914	1.6149	0.000942	0.083923	4.8954E-05	1.6988	0.00099096	583.321810399582	7.3408	0.17734	7.3408	7.2698	7.4472	0	567	28	0.944945209309785	0.018214610793113	0.944945209309785	382.965379894226	0	7.3819786303855						345	21	4	NaN	NaN	NaN	2.6899E-07	1	8471	115.86	78.27	1	139440			5524	905	4718	4830	5524	5524		
EWDLLNENIMLLSK	14	Unmodified	_EWDLLNENIMLLSK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.445105	1716.87566	1.5207	0.001307	3.6747	0.0031582	5.1954	0.0044651	859.448251156458	19.357	0.04432	19.357	19.33	19.375	0	345	34	1.09397730668811	0.0220389790328746	1.09397730668811	441.691535523156	0	8.89820148085414						93	6	2	NaN	NaN	NaN	8.6441E-06	1	24969	97.594	85.637	1	18062			5525	64	4719	4831	5525	5525		
EWFFLLSK	8	Unmodified	_EWFFLLSK_			0	0	0	Q96PU5	Q96PU5	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.289485	1068.56442	-1.1433	-0.00061197	2.1872	0.0011708	1.044	0.00055883	535.290489058851	18.213	0.053192	18.213	18.169	18.222	0	654	25	0.886123392477847	0.0162571004140306	0.886123392477847	359.503811115691	0	6.59557078184304						68	7	2	NaN	NaN	NaN	0.026266	1	5928	39.324	0	1	11935			5526	2597	4720	4832	5526	5526		
EWFLQAAK	8	Unmodified	_EWFLQAAK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.763635	991.512717	-0.26194	-0.00013012	0.66053	0.00032813	0.39859	0.000198	496.764226978498	11.465	0.21297	11.465	11.403	11.616	0	687	43	0.863749705078866	0.0284973564255872	0.863749705078866	350.773048489412	0	11.5729180901773						418	25	3	NaN	NaN	NaN	0.0035605	1	4091	78.178	35.95	1	102910			5527	546	4721	4833	5527	5527		
EWHFHLPQLMR	11	Unmodified	_EWHFHLPQLMR_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.587201	1492.73977	-2.1954	-0.0010946	0.51203	0.00025529	-1.6833	-0.00083929	498.587527774096	13.832	0.16848	13.832	13.708	13.877	0	798	16	0.788241307691771	0.0102294058339829	0.788241307691771	477.94734519936	0	6.20256425743014						175	20	3	NaN	NaN	NaN	2.815E-05	1	18326	99.305	90.831	1	29930			5528	1979	4722	4834	5528	5528		
EWHHFLVVNMK	11	Unmodified	_EWHHFLVVNMK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.579935	1438.71798	0.63764	0.00030644	-0.78904	-0.0003792	-0.1514	-7.2758E-05	480.579584788451	9.7534	0.1064	9.7534	9.709	9.8154	0	699	34	0.85560534332665	0.0224047758340703	0.85560534332665	518.971953307597	0	13.5897354647389						375	13	5	NaN	NaN	NaN	3.4301E-08	1	16635	133.98	117.69	1	187700			5529	903	4723	4835	5529	5529		
EWHHFLVVNMK	11	Unmodified	_EWHHFLVVNMK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.366264	1438.71798	2.5099	0.001808	0.96332	0.00069394	3.4732	0.002502	720.366954902922	9.7534	0.11526	9.7534	9.709	9.8243	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	423.70979789945	0	8.12807965701535						197	14	2	NaN	NaN	NaN	3.4996E-08	1	16637	120.33	111.36	1	90774			5530	903	4723	4835	5530	5530		
EWLIEVPGNADPLEDQFAK	19	Unmodified	_EWLIEVPGNADPLEDQFAK_			0	0	0	Q15050	Q15050	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.0364	2170.05825	0.72182	0.00078392	-0.50012	-0.00054315	0.2217	0.00024077	1086.53824577812	18.328	0.14186	18.328	18.275	18.417	0	108	70	1.25141139212444	0.0455778207794331	1.25141139212444	504.409363189222	0	18.371160514911						589	17	4	NaN	NaN	NaN	0.00011755	1	34312	65.408	63.675	1	157840			5531	1802	4724	4836	5531	5531		
EWLLGMLGAESAK	13	Unmodified	_EWLLGMLGAESAK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.86322	1403.71189	1.0542	0.00074097	-0.56221	-0.00039516	0.49201	0.00034582	702.862964086239	17.619	0.1596	17.619	17.575	17.734	0	441	40	1.02971785871157	0.0261684967549374	1.02971785871157	416.488861667174	0	10.5843434031942						547	19	5	NaN	NaN	NaN	2.4012E-07	1	15576	125.17	106.83	1	254750			5532	652	4725	4837	5532	5532		
EWLLGMLGAESAK	13	Oxidation (M)	_EWLLGM(Oxidation (M))LGAESAK_	EWLLGM(1)LGAESAK	EWLLGM(53)LGAESAK	0	1	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.860677	1419.7068	0.50172	0.00035666	1.4282	0.0010153	1.9299	0.0013719	710.861984890603	14.772	0.11531	14.772	14.746	14.861	0	429	28	1.03776581230406	0.0181066471151929	1.03776581230406	419.697864458354	0	7.32277074138278						117	14	2	NaN	NaN	NaN	0.034115	1	16087	53.028	37.148	1	27823			5533	652	4725	4838	5533	5533	193	
EWLTELFQQSK	11	Unmodified	_EWLTELFQQSK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.858992	1407.70343	0.42272	0.00029796	1.1812	0.00083259	1.6039	0.0011305	704.859825362379	17.22	0.19507	17.22	17.131	17.326	0	480	43	1.00353128488872	0.0282301658273657	1.00353128488872	405.885971912246	0	11.417908406667						466	23	4	NaN	NaN	NaN	6.8199E-06	1	15700	109.88	101.4	1	127310			5534	1457	4726	4839	5534	5534		
EWLTNFMEDR	10	Unmodified	_EWLTNFMEDR_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.80062	1339.58669	1.1679	0.00078345	-0.026835	-1.8001E-05	1.1411	0.00076545	670.800700537976	15.464	0.15086	15.464	15.42	15.571	-1.7764E-15	507	46	0.985374541851584	0.0302821710490335	0.985374541851584	398.739427702609	0	12.2539146698422						560	18	4	NaN	NaN	NaN	6.2489E-05	1	13572	96.311	73.925	1	277360			5535	652;1534	4727	4840	5535	5535		
EWPSNLDLR	9	Unmodified	_EWPSNLDLR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.285463	1128.55637	0.77622	0.00043879	-1.1484	-0.00064916	-0.37215	-0.00021037	565.285625173792	11.687	0.37249	11.687	11.545	11.917	0	579	76	0.936845902828289	0.0506522651893861	0.936845902828289	379.824924296273	0	20.5359202969366						841	43	4	NaN	NaN	NaN	0.00033058	1	7484	94.806	75.319	1	318910			5536	922	4728	4841	5536	5536		
EWQELDDAEK	10	Unmodified	_EWQELDDAEK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.780407	1261.54626	1.8463	0.0011665	0.96774	0.0006114	2.814	0.0017779	631.780837239826	7.2875	0.15961	7.2875	7.2255	7.3851	0	540	37	0.963152256458504	0.0242609491796308	0.963152256458504	389.993101052485	0	9.82357954476601						362	19	3	NaN	NaN	NaN	0.00016767	1	11255	70.389	55.626	1	151430			5537	1642	4729	4842	5537	5537		
EWSGLLEELAR	11	Unmodified	_EWSGLLEELAR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.838059	1301.66157	0.16726	0.00010903	-0.026254	-1.7113E-05	0.14101	9.1916E-05	651.838220364969	16.998	0.24826	16.998	16.936	17.184	0	546	58	0.959108205975751	0.0384158376205809	0.959108205975751	388.225999561268	0	15.549889852168						920	29	4	NaN	NaN	NaN	2.2254E-11	1	12400	158.57	135.51	1	872230			5538	1521	4730	4843	5538	5538		
EWTDGLFTHVLR	12	Unmodified	_EWTDGLFTHVLR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.921014	1472.74121	-1.2602	-0.00061994	0.24098	0.00011854	-1.0193	-0.0005014	491.921250421655	14.879	0.12414	14.879	14.834	14.959	0	714	34	0.845418525735192	0.0224203443559257	0.845418525735192	512.680401826464	0	13.5961902934264						328	15	4	NaN	NaN	NaN	2.7131E-05	1	17666	108.3	90.833	1	162640			5539	1737	4731	4844	5539	5539		
EWVESMGGK	9	Unmodified	_EWVESMGGK_			0	0	0	P50502;Q8NFI4	P50502	P50502	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.734217	1021.45388	0.21464	0.00010984	3.1027	0.0015878	3.3173	0.0016976	511.735905231084	6.4629	0.25713	6.4629	6.3476	6.6047	0	711	37	0.847456455381371	0.0244568589772431	0.847456455381371	344.018192007958	0	9.92806692794443						428	30	3	NaN	NaN	NaN	0.0045833	1	4762	47.349	19.645	1	139850			5540	1165	4732	4845	5540	5540		
EWVLDCHR	8	Unmodified	_EWVLDCHR_			0	0	0	P18887	P18887	P18887	XRCC1	DNA repair protein XRCC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.758558	1113.50256	0.57664	0.00032163	3.6148	0.0020162	4.1914	0.0023378	558.26177074806	6.6313	0.10642	6.6313	6.587	6.6934	0	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	360.967156476975	0	9.88690248286559						216	13	3	NaN	NaN	NaN	0.026462	1	7070	49.325	39.246	1	59590			5541	761	4733	4846	5541	5541		
EWYGWHFPELGK	12	Unmodified	_EWYGWHFPELGK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.91386	1547.71975	0.17964	9.2859E-05	-1.0669	-0.00055148	-0.88722	-0.00045862	516.913280036008	15.437	0.17744	15.437	15.331	15.508	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	538.354541767307	0	9.8542227799162						290	21	3	NaN	NaN	NaN	0.024377	1	19967	30.349	27.869	1	73226			5542	3357	4734	4847	5542	5542		
EWYPSLATMQESLR	14	Unmodified	_EWYPSLATMQESLR_			0	0	0	Q8TAE8	Q8TAE8	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.91143	1709.80831	1.5394	0.0013176	-5.1832	-0.0044364	-3.6439	-0.0031188	855.9060337581	15.872	0.133	15.872	15.81	15.943	0	321	73	1.10999792833052	0.0480817590867202	1.10999792833052	448.174702127898	0	19.4135750225108						553	15	3	NaN	NaN	NaN	1.0534E-05	1	24740	88.734	72.446	1	137920			5543	2332	4735	4848	5543	5543		
EYAEDDNIYQQK	12	Unmodified	_EYAEDDNIYQQK_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.333535	1514.65252	2.0492	0.001554	2.0011	0.0015175	4.0503	0.0030715	758.333600365645	5.4962	0.28371	5.4962	5.4254	5.7091	0	453	49	1.02166545906632	0.0322140561522897	1.02166545906632	412.936503545206	0	13.0202695946012						615	33	4	NaN	NaN	NaN	4.3308E-11	1	18948	171.34	163.78	1	206210			5544	2529	4736	4849	5544	5544		
EYAENIGDGR	10	Unmodified	_EYAENIGDGR_			0	0	0	Q8WYA6	Q8WYA6	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.25436	1122.49417	1.4976	0.00084202	2.1811	0.0012263	3.6787	0.0020684	562.255319234647	4.1396	0.13301	4.1396	4.113	4.246	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	366.695803031564	0	8.23028345011357						162	16	2	NaN	NaN	NaN	0.0010282	1	7329	67.507	39.771	1	45584			5545	2400	4737	4850	5545	5545		
EYAESIGAIVVETSAK	16	Unmodified	_EYAESIGAIVVETSAK_			0	0	0	Q13636	Q13636	Q13636	RAB31	Ras-related protein Rab-31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.930342	1665.84613	1.6428	0.00137	0.62706	0.00052292	2.2699	0.0018929	833.930756936347	13.398	0.10641	13.398	13.363	13.469	0	219	25	1.17788915118882	0.0159392908716918	1.17788915118882	475.68746763408	0	6.43704112817892						160	13	3	NaN	NaN	NaN	1.9758E-06	1	23515	95.656	81.201	1	31407			5546	1698	4738	4851	5546	5546		
EYAQNIWNVEPSDLK	15	Unmodified	_EYAQNIWNVEPSDLK_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.438866	1804.86318	2.27	0.0020508	1.3406	0.0012112	3.6106	0.003262	903.941302530903	13.504	0.21282	13.504	13.434	13.646	0	282	49	1.13599383354359	0.0319663599333924	1.13599383354359	458.476533344936	0	12.9013252124803						675	25	4	NaN	NaN	NaN	2.7908E-06	1	27347	130.65	121.39	1	157370			5547	545	4739	4852	5547	5547		
EYATEVDVDFVR	12	Unmodified	_EYATEVDVDFVR_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.843539	1441.67252	0.61828	0.0004463	2.1757	0.0015705	2.794	0.0020168	721.843600082713	11.979	0.15962	11.979	11.917	12.077	0	468	58	1.01159370163332	0.0382726935815298	1.01159370163332	409.053075861441	0	15.4761373125887						487	19	3	NaN	NaN	NaN	0.00035937	1	16714	74.849	67.291	1	145880			5548	1423;1587	4740	4853	5548	5548		
EYAVNEVVAGIK	12	Unmodified	_EYAVNEVVAGIK_			0	0	0	Q15014;Q9UBU8	Q15014;Q9UBU8	Q9UBU8	MORF4L2;MORF4L1	Mortality factor 4-like protein 2;Mortality factor 4-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.34826	1290.68197	1.3662	0.00088306	-1.3054	-0.00084373	0.060843	3.9326E-05	646.848829268541	11.261	0.12414	11.261	11.208	11.332	0	525	43	0.973257487423603	0.0282770433233913	0.973257487423603	393.988516537906	0	11.4469505706583						301	15	3	NaN	NaN	NaN	0.0023971	1	12101	61.48	53.297	1	84399			5549	3190;1791	4741	4854	5549	5549		
EYCIQAFESFVR	12	Unmodified	_EYCIQAFESFVR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.861209	1547.70786	0.87559	0.00067846	0.85403	0.00066176	1.7296	0.0013402	774.861831812863	15.97	0.11527	15.97	15.925	16.041	0	444	58	1.02770517576159	0.0382251566582583	1.02770517576159	415.297292118905	0	15.4468464549976						496	14	4	NaN	NaN	NaN	2.9655E-07	1	19965	136.94	128.94	1	112360			5550	2175	4742	4855	5550	5550		
EYCISSDDLFSLPYCPGK	18	Unmodified	_EYCISSDDLFSLPYCPGK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1075.9741	2149.93364	1.0261	0.0011041	0.84601	0.00091028	1.8721	0.0020144	1076.47661875538	16.839	0.15078	16.839	16.794	16.945	0	180	112	1.203763835057	0.0736030038005464	1.203763835057	485.232832013658	0	29.6691036387217						1580	18	6	NaN	NaN	NaN	7.5426E-26	1	34010	178.52	177.15	1	486160			5551	1914	4743	4856	5551	5551		
EYDELAETQGK	11	Unmodified	_EYDELAETQGK_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.793514	1281.57248	1.6369	0.0010505	1.5066	0.00096695	3.1435	0.0020175	641.794213001521	5.2036	0.23059	5.2036	5.0972	5.3278	0	567	25	0.944945209309785	0.016196370719784	0.944945209309785	382.556081076305	0	6.55701521016789						282	27	3	NaN	NaN	NaN	8.05E-05	1	11804	112.8	98.266	1	62144			5552	257	4744	4857	5552	5552		
EYDLIVHQLATYPDVNNSIK	20	Unmodified	_EYDLIVHQLATYPDVNNSIK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.065502	2331.17468	1.3248	0.0010308	-0.83838	-0.00065232	0.48645	0.00037849	778.398946286911	14.365	0.062064	14.365	14.338	14.4	0	435	43	1.03374239103424	0.0281795132980842	1.03374239103424	624.733071984268	0	17.0300396524519						276	8	4	NaN	NaN	NaN	0.00041262	1	35907	70.598	69.347	1	62762			5553	334	4745	4858	5553	5553		
EYEIPSNLTPADVFFR	16	Unmodified	_EYEIPSNLTPADVFFR_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.470166	1896.92578	1.3559	0.0012873	0.8347	0.00079252	2.1906	0.0020799	949.47086832163	18.275	0.14186	18.275	18.213	18.355	0	237	58	1.16593139812432	0.0379052838116003	1.16593139812432	470.384880139783	0	15.2925570158484						527	17	4	NaN	NaN	NaN	0.0011587	1	29539	72.846	63.104	1	123950			5554	2369	4746	4859	5554	5554		
EYELESLFEHYCYSR	15	Unmodified	_EYELESLFEHYCYSR_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.628007	2023.86219	-0.2906	-0.00019633	0.0023908	1.6153E-06	-0.2882	-0.00019472	675.962224404249	15.837	0.070929	15.837	15.801	15.872	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	549.514910258842	0	11.0467728359432						211	9	4	NaN	NaN	NaN	0.0028877	1	32039	44.82	40.265	1	50985			5555	672	4747	4860	5555	5555		
EYELLSDELNQK	12	Unmodified	_EYELLSDELNQK_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.861928	1479.7093	1.0548	0.00078145	4.0281	0.0029843	5.0829	0.0037657	740.864800785704	11.607	0.21286	11.607	11.527	11.74	0	423	82	1.04178812298108	0.054304988690411	1.04178812298108	421.15970168933	0	21.9536701682204						377	25	2	NaN	NaN	NaN	9.1821E-07	1	17892	104.39	78.781	1	116040			5556	944	4748	4861	5556	5556		
EYENELAK	8	Unmodified	_EYENELAK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.237647	994.460741	1.7982	0.00089593	1.0558	0.00052605	2.854	0.001422	498.238017723234	3.7938	0.11526	3.7938	3.7583	3.8736	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	357.367972653304	0	8.25685886020301						176	14	3	NaN	NaN	NaN	0.015283	1	4147	56.014	38.32	1	44773			5557	718	4749	4862	5557	5557		
EYEQELSDDLHVER	14	Unmodified	_EYEQELSDDLHVER_			0	0	0	Q7Z7F7	Q7Z7F7	Q7Z7F7	MRPL55	39S ribosomal protein L55, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.935717	1760.78532	0.77904	0.00045803	0.5364	0.00031537	1.3154	0.0007734	588.270428010079	9.177	0.079813	9.177	9.1415	9.2213	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	543.927408275159	0	9.83683079322543						196	10	5	NaN	NaN	NaN	0.00019788	1	26157	86.243	82.26	1	57481			5558	2152	4750	4863	5558	5558		
EYEQELSDDLHVER	14	Unmodified	_EYEQELSDDLHVER_			0	0	0	Q7Z7F7	Q7Z7F7	Q7Z7F7	MRPL55	39S ribosomal protein L55, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.399938	1760.78532	2.5709	0.002266	-0.5957	-0.00052505	1.9752	0.0017409	881.399441035085	9.1947	0.070939	9.1947	9.1504	9.2213	0	297	25	1.12600091227925	0.0159919751771491	1.12600091227925	454.530222552387	0	6.45544418042095						101	9	2	NaN	NaN	NaN	0.015067	1	26158	57.003	51.852	1	27750			5559	2152	4750	4863	5559	5559		
EYFGAFGEIENIELPMDTK	19	Unmodified	_EYFGAFGEIENIELPMDTK_			0	0	0	O14979	O14979	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.01682	2202.01909	0.7696	0.00084811	0.045405	5.0038E-05	0.815	0.00089815	1102.51870634566	19.02	0.14181	19.02	18.984	19.126	0	114	136	1.24744674793813	0.0892964562982508	1.24744674793813	502.764901180414	0	35.9896116613852						1077	17	6	NaN	NaN	NaN	3.5699E-15	1	34700	139.7	134.09	1	366300			5560	134	4751	4864	5560	5560		
EYFGAFGEIENIELPMDTK	19	Oxidation (M)	_EYFGAFGEIENIELPM(Oxidation (M))DTK_	EYFGAFGEIENIELPM(1)DTK	EYFGAFGEIENIELPM(96)DTK	0	1	0	O14979	O14979	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.01428	2218.014	1.0306	0.0011439	0.66389	0.00073693	1.6945	0.0018809	1110.51659483571	17.716	0.17732	17.716	17.619	17.796	0	87	82	1.26527909472281	0.0535044108607601	1.26527909472281	509.928905395347	0	21.5631837891286						964	21	5	NaN	NaN	NaN	2.0336E-06	1	34872	96.27	93.196	1	215850			5561	134	4751	4865	5561	5561	36	
EYFGEFGEIEAIELPMDPK	19	Unmodified	_EYFGEFGEIEAIELPMDPK_			0	0	0	Q99729	Q99729	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1107.5192	2213.02384	0.34495	0.00038204	0.13118	0.00014528	0.47613	0.00052732	1108.02071546256	19.242	0.13302	19.242	19.188	19.321	0	108	91	1.25141139212444	0.0594941807546383	1.25141139212444	504.347067260057	0	23.9774991433495						896	16	5	NaN	NaN	NaN	1.0945E-14	1	34820	158.02	153.2	1	191460			5562	2669	4752	4866	5562	5562		
EYFGEFGEIEAIELPMDPK	19	Oxidation (M)	_EYFGEFGEIEAIELPM(Oxidation (M))DPK_	EYFGEFGEIEAIELPM(1)DPK	EYFGEFGEIEAIELPM(100)DPK	0	1	0	Q99729	Q99729	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1115.51665	2229.01875	0.51652	0.00057619	1.2968	0.0014466	1.8133	0.0020228	1116.01961022336	17.92	0.079775	17.92	17.876	17.956	0	93	67	1.26131825079847	0.0435991607863409	1.26131825079847	508.31699337504	0	17.5706601490608						449	10	4	NaN	NaN	NaN	2.0804E-08	1	34975	104	93.354	1	86571			5563	2669	4752	4867	5563	5563	617	
EYFGGFGEVESIELPMDNK	19	Unmodified	_EYFGGFGEVESIELPMDNK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.997989	2159.97214	0.64247	0.00046322	-0.35719	-0.00025753	0.28528	0.00020569	721.332213300121	17.708	0.070925	17.708	17.672	17.743	0	531	40	0.969216233931596	0.0262736050362692	0.969216233931596	586.012093750813	0	15.885671080054						222	9	4	NaN	NaN	NaN	0.0015388	1	34168	40.83	39.242	1	39447			5564	1717	4753	4868	5564	5564		
EYFGGFGEVESIELPMDNK	19	Unmodified	_EYFGGFGEVESIELPMDNK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.99334	2159.97214	1.4835	0.0016037	0.0013912	1.5039E-06	1.4849	0.0016052	1081.49500930128	17.699	0.1862	17.699	17.637	17.823	0	144	121	1.22760721615852	0.0793582669380122	1.22760721615852	494.829251972797	0	31.9880751350385						1999	21	6	NaN	NaN	NaN	1.6985E-45	1	34170	233.59	229.03	1	803850			5565	1717	4753	4868	5565	5565		
EYFGGFGEVESIELPMDNK	19	Oxidation (M)	_EYFGGFGEVESIELPM(Oxidation (M))DNK_	EYFGGFGEVESIELPM(1)DNK	EYFGGFGEVESIELPM(200)DNK	0	1	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.9908	2175.96705	0.98167	0.001069	-0.048583	-5.2906E-05	0.93308	0.0010161	1088.99039911432	16.165	0.13301	16.165	16.111	16.245	0	138	124	1.23157729878518	0.0812809347632668	1.23157729878518	496.40621250873	0	32.7615335349246						1066	16	5	NaN	NaN	NaN	2.8357E-34	1	34389	203.76	201.22	1	300600			5566	1717	4753	4869	5566	5566	558	
EYFSWEGAFQHVGK	14	Unmodified	_EYFSWEGAFQHVGK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.263329	1683.76816	0.30128	0.0001694	-1.31	-0.00073657	-1.0087	-0.00056717	562.262542524954	13.602	0.18619	13.602	13.558	13.744	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	530.580721510939	0	12.3192147482754						431	22	5	NaN	NaN	NaN	0.0024167	1	24005	68.49	57.703	1	263180			5567	859	4754	4870	5567	5567		
EYFSWEGAFQHVGK	14	Unmodified	_EYFSWEGAFQHVGK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.891355	1683.76816	2.8098	0.0023684	1.669	0.0014068	4.4788	0.0037751	842.89273902004	13.602	0.21283	13.602	13.549	13.762	0	318	94	1.11199926528787	0.0620842502751899	1.11199926528787	449.038571133675	0	25.0703610188625						1749	25	6	NaN	NaN	NaN	1.1458E-11	1	24007	177.47	168.2	1	2769600			5568	859	4754	4870	5568	5568		
EYGEQIDPSTHR	12	Unmodified	_EYGEQIDPSTHR_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.88815	1430.64262	-0.29661	-0.00014175	0.85639	0.00040926	0.55977	0.00026751	477.888711242577	4.113	0.16848	4.113	4.0509	4.2194	0	801	28	0.78619514174348	0.0184180594239544	0.78619514174348	476.896417681767	0	11.1721709961922						341	20	4	NaN	NaN	NaN	0.002754	1	16400	94.804	89.653	1	118180			5569	3341	4755	4871	5569	5569		
EYGFCIMDNHK	11	Unmodified	_EYGFCIMDNHK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.29993	1412.58531	1.7871	0.001264	1.9948	0.0014109	3.7819	0.0026749	707.300480532908	8.9198	0.15089	8.9198	8.8576	9.0085	0	474	34	1.00756305028564	0.0221731807232346	1.00756305028564	407.502945970507	0	8.96781244974494						319	18	3	NaN	NaN	NaN	0.00047083	1	15829	83.358	77.862	1	127490			5570	651	4756	4872	5570	5570		
EYGGLDVLVNNAGIAFK	17	Unmodified	_EYGGLDVLVNNAGIAFK_			0	0	0	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.467426	1778.9203	2.0739	0.0018467	-0.36911	-0.00032868	1.7047	0.001518	890.466686572204	17.681	0.26598	17.681	17.583	17.849	0	279	82	1.13799159301878	0.0538950585976328	1.13799159301878	459.333884816657	0	21.7539626741895						1160	31	5	NaN	NaN	NaN	6.1887E-19	1	26653	178.65	167.68	1	422830			5571	724	4757	4873	5571	5571		
EYGQIESVR	9	Unmodified	_EYGQIESVR_			0	0	0	P42696	P42696	P42696	RBM34	RNA-binding protein 34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.769645	1079.52474	0.68815	0.00037213	0.24733	0.00013375	0.93548	0.00050588	540.769372091378	5.2302	0.12418	5.2302	5.2036	5.3278	0	630	31	0.902373728295776	0.0203016545312636	0.902373728295776	366.049341872624	0	8.23539853507197						174	15	3	NaN	NaN	NaN	0.0062155	1	6194	36.211	29.448	1	39871			5572	1054	4758	4874	5572	5572		
EYIEIITSSIK	11	Unmodified	_EYIEIITSSIK_			0	0	0	Q8WUW1	Q8WUW1	Q8WUW1	BRK1	Protein BRICK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.358293	1294.70203	1.4274	0.00092545	-0.31129	-0.00020183	1.1161	0.00072362	648.358412836056	13.815	0.1064	13.815	13.77	13.877	0	519	43	0.97729762293174	0.0282692223025561	0.97729762293174	395.611008982428	0	11.4434081244501						234	13	2	NaN	NaN	NaN	0.00044488	1	12214	102.55	96.282	1	110340			5573	2372	4759	4875	5573	5573		
EYIPGQPPLSQSSDSSPTR	19	Unmodified	_EYIPGQPPLSQSSDSSPTR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.49236	2044.97016	1.7512	0.0017923	-0.61695	-0.00063144	1.1343	0.0011609	1023.99326107009	8.6091	0.14186	8.6091	8.5116	8.6534	0	135	82	1.23356193185193	0.0536513246118075	1.23356193185193	497.408139558667	0	21.6337784678172						327	17	3	NaN	NaN	NaN	2.4233E-05	1	32436	73.305	60.087	1	56755			5574	565	4760	4876	5574	5574		
EYIPGQPPLSQSSDSSPTR	19	Unmodified	_EYIPGQPPLSQSSDSSPTR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.49236	2044.97016	2.0569	0.0021052	-0.4529	-0.00046354	1.604	0.0016416	1023.49162854682	8.5914	0.12412	8.5914	8.5293	8.6534	0	243	43	1.16194328902838	0.0279052631275762	1.16194328902838	468.529413971613	0	11.25221575213						222	15	2	NaN	NaN	NaN	0.00084097	1	32437	52.201	48.351	1	45556			5575	565	4760	4876	5575	5575		
EYLDNVQLGHILER	14	Unmodified	_EYLDNVQLGHILER_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.965171	1697.87368	0.18114	0.0001027	-2.2732	-0.0012888	-2.092	-0.0011861	567.29781415055	13.363	0.14191	13.363	13.274	13.416	0	636	31	0.898312834727904	0.020312920651839	0.898312834727904	544.084664129033	0	12.3030064617557						216	17	4	NaN	NaN	NaN	0.0016375	1	24438	38.584	35.482	1	53906			5576	876	4761	4877	5576	5576		
EYLDNVQLGHILER	14	Unmodified	_EYLDNVQLGHILER_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.944118	1697.87368	1.4886	0.0012652	0.051723	4.3961E-05	1.5403	0.0013092	849.945333675014	13.363	0.12419	13.363	13.309	13.434	0	246	40	1.1599488233373	0.0259280591275983	1.1599488233373	468.369413819329	0	10.4693496909						328	15	4	NaN	NaN	NaN	3.8239E-08	1	24440	135.21	125.19	1	119600			5577	876	4761	4877	5577	5577		
EYLLGSTAEEK	11	Unmodified	_EYLLGSTAEEK_			0	0	0	O43324	O43324	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.3088	1238.60305	1.7967	0.0011145	2.1425	0.001329	3.9392	0.0024435	620.309259969782	7.1545	0.35476	7.1545	7.0037	7.3585	0	534	61	0.967195187796614	0.0404405239988286	0.967195187796614	391.708667702466	0	16.3781871297956						906	41	4	NaN	NaN	NaN	9.9912E-05	1	10572	92.732	76.274	1	276770			5578	195	4762	4878	5578	5578		
EYLLPPETQPLHEVVYFSAAHALR	24	Unmodified	_EYLLPPETQPLHEVVYFSAAHALR_			0	0	0	Q9UBD5	Q9UBD5	Q9UBD5	ORC3	Origin recognition complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	695.865614	2779.43335	-0.20027	-0.00013936	-1.2627	-0.00087866	-1.463	-0.001018	696.364916827829	16.422	0.079798	16.422	16.386	16.466	0	483	13	1.00151498427745	0.00806575993173153	1.00151498427745	806.236246635938	0	6.4930711129773						78	10	3	NaN	NaN	NaN	0.06756	1	37838	6.5707	6.3371	1	13899			5579	3171	4763	4879	5579	5579		
EYLLSGDISEAEHCLK	16	Unmodified	_EYLLSGDISEAEHCLK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.964619	1862.87203	1.6155	0.0010048	-2.8881	-0.0017963	-1.2725	-0.00079146	622.29569634279	12.804	0.16851	12.804	12.724	12.893	0	582	46	0.934820374997243	0.0303955552959029	0.934820374997243	565.79056196257	0	18.3966019269574						559	20	5	NaN	NaN	NaN	1.9659E-06	1	28752	101.64	98.558	1	244260			5580	1946	4764	4880	5580	5580		
EYLLSGDISEAEHCLK	16	Unmodified	_EYLLSGDISEAEHCLK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.443291	1862.87203	2.2961	0.002141	0.055299	5.1563E-05	2.3514	0.0021926	932.944563456094	12.804	0.13302	12.804	12.751	12.884	0	183	64	1.20177511391933	0.0417688982610558	1.20177511391933	484.910068698445	0	16.8535353167468						657	16	5	NaN	NaN	NaN	5.5081E-05	1	28754	103.76	94.498	1	217450			5581	1946	4764	4880	5581	5581		
EYLPFLNTLK	10	Unmodified	_EYLPFLNTLK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.344989	1236.67542	0.46627	0.00028878	-0.27442	-0.00016996	0.19185	0.00011882	619.344910369792	16.245	0.11528	16.245	16.182	16.298	0	516	49	0.979317271586824	0.0323210938061441	0.979317271586824	396.624869169044	0	13.090088344394						338	14	3	NaN	NaN	NaN	5.6984E-05	1	10535	88.921	72.463	1	77411			5582	408	4765	4881	5582	5582		
EYLPIGGLAEFCK	13	Unmodified	_EYLPIGGLAEFCK_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.876327	1495.7381	1.0476	0.0007845	1.7304	0.0012958	2.7779	0.0020803	748.878138701989	15.695	0.23935	15.695	15.633	15.872	0	429	58	1.03776581230406	0.0382251566582583	1.03776581230406	419.491969960408	0	15.4516038960818						1094	28	6	NaN	NaN	NaN	3.4322E-08	1	18415	150.21	139.95	1	1011200			5583	482	4766	4882	5583	5583		
EYLSEEVQAVHK	12	Unmodified	_EYLSEEVQAVHK_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.359356	1430.70416	2.3237	0.0016646	-0.67878	-0.00048625	1.6449	0.0011784	716.358762259809	6.6845	0.1862	6.6845	6.5959	6.7821	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	418.853278189774	0	8.13524731620004						371	22	4	NaN	NaN	NaN	9.1821E-07	1	16417	124.81	114.1	1	153820			5584	1949	4767	4883	5584	5584		
EYNEDEDPAAR	11	Unmodified	_EYNEDEDPAAR_			0	0	0	Q13123	Q13123	Q13123	IK	Protein Red	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.770571	1307.52659	1.9818	0.0012976	-0.10685	-6.9961E-05	1.875	0.0012277	654.770402803062	3.306	0.15959	3.306	3.2617	3.4213	0	600	22	0.922661313351899	0.0141904869950359	0.922661313351899	373.455502314956	0	5.74372781445953						196	19	2	NaN	NaN	NaN	3.9416E-05	1	12574	123.5	115.03	1	44237			5585	1629	4768	4884	5585	5585		
EYNEFAEVFLK	11	Unmodified	_EYNEFAEVFLK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.840268	1387.66598	0.80678	0.00056058	0.47911	0.0003329	1.2859	0.00089349	694.840253791594	15.837	0.20398	15.837	15.775	15.978	0	477	49	1.0055473068722	0.0322585904613818	1.0055473068722	406.758495898298	0	13.0490685482374						666	24	4	NaN	NaN	NaN	0.0060449	1	15069	53.517	45.334	1	292760			5586	429	4769	4885	5586	5586		
EYQDLLNVK	9	Unmodified	_EYQDLLNVK_			0	0	0	P08670;P17661;P12036;P07197;P07196;Q16352	P08670	P08670	VIM;DES;NEFH;NEFM;NEFL;INA	Vimentin;Desmin;Neurofilament heavy polypeptide;Neurofilament medium polypeptide;Neurofilament light polypeptide;Alpha-internexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.295496	1120.57644	1.4826	0.00083219	2.592	0.0014549	4.0746	0.0022871	561.297370466577	9.913	0.32805	9.913	9.7002	10.028	0	606	100	0.918606045818476	0.0669630339584112	0.918606045818476	372.461936633741	0	27.1511181801533						1134	38	4	NaN	NaN	NaN	0.00017726	1	7282	90.308	55.377	1	555650			5587	588	4770	4886	5587	5587		
EYQELMNVK	9	Oxidation (M)	_EYQELM(Oxidation (M))NVK_	EYQELM(1)NVK	EYQELM(51)NVK	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q8BGZ7;CON__P04259;P02538;P04259;P48668;CON__P50446;CON__P02538;CON__P48668	P05787	P05787	KRT8;KRT6A;KRT6B;KRT6C	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.278989	1168.54342	2.3264	0.0013616	0.70741	0.00041403	3.0339	0.0017757	585.27918115537	5.0972	0.24827	5.0972	4.9908	5.2391	0	588	40	0.93076847747433	0.0263464629071559	0.93076847747433	377.205071951003	0	10.6772196062283						527	29	4	NaN	NaN	NaN	0.02945	1	8563	51.43	39.781	1	149680		+	5588	28	4771	4887	5588	5588	7	
EYQELMSVK	9	Unmodified	_EYQELMSVK_			0	0	0	P08729;CON__Q3KNV1;CON__P08729;P19013;CON__P19013	P08729	P08729	KRT7;KRT4	Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.776082	1125.53761	1.4575	0.00082173	1.7341	0.00097764	3.1916	0.0017994	563.776882648291	7.8463	0.17735	7.8463	7.7842	7.9615	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	370.797356295364	0	9.04611460455061						455	21	4	NaN	NaN	NaN	0.00087654	1	7402	76.605	29.255	1	166700		+	5589	39	4772	4888	5589	5589		
EYQLNDSAAYYLNDLDR	17	Unmodified	_EYQLNDSAAYYLNDLDR_			0	0	0	P63096	P63096	P63096	GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.97126	2061.92796	1.6003	0.0016514	2.4492	0.0025275	4.0494	0.0041789	1032.47534687915	15.109	0.10639	15.109	15.065	15.171	0	171	34	1.20972836110953	0.021866930737948	1.20972836110953	487.770684209656	0	8.8168948588023						222	13	4	NaN	NaN	NaN	0.0001911	1	32727	65.212	54.887	1	56048			5590	1425	4773	4889	5590	5590		
EYQLNDSAAYYLNDLER	17	Unmodified	_EYQLNDSAAYYLNDLER_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.97908	2075.94361	1.169	0.0012146	4.6227	0.0048028	5.7916	0.0060174	1039.48681501855	15.34	0.13299	15.34	15.278	15.411	0	165	28	1.21370334790578	0.0178837612372205	1.21370334790578	489.351317940269	0	7.21052812968122						242	16	4	NaN	NaN	NaN	6.0304E-10	1	32954	91.993	83.619	1	70012			5591	520	4774	4890	5591	5591		
EYQLNDSASYYLNDLDR	17	Unmodified	_EYQLNDSASYYLNDLDR_			0	0	0	P08754	P08754	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.96872	2077.92288	1.716	0.0017846	1.2523	0.0013023	2.9683	0.0030869	1040.47130344771	14.48	0.070964	14.48	14.435	14.506	0	162	49	1.21569043230068	0.0317955409461008	1.21569043230068	490.149396450351	0	12.8195178562442						287	9	5	NaN	NaN	NaN	9.0793E-14	1	32982	141.87	129.85	1	105540			5592	590	4775	4891	5592	5592		
EYQNEEDSLGGSR	13	Unmodified	_EYQNEEDSLGGSR_			0	0	0	Q5HYK3	Q5HYK3	Q5HYK3	COQ5	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.318416	1482.62228	2.0468	0.0015193	-0.44624	-0.00033125	1.6005	0.0011881	742.318044811159	4.2992	0.08866	4.2992	4.2726	4.3613	0	501	25	0.98941132619024	0.0161426739918176	0.98941132619024	399.978269749488	0	6.52581857662676						123	11	3	NaN	NaN	NaN	6.5797E-05	1	17979	92.707	78.712	1	23658			5593	1963	4776	4892	5593	5593		
EYQVETIVDTLCTNMLSDK	19	Unmodified	_EYQVETIVDTLCTNMLSDK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1130.0296	2258.04465	-0.14318	-0.0001618	1.1085	0.0012527	0.96537	0.0010909	1130.53187130947	19.091	0.062036	19.091	19.064	19.126	0	66	55	1.27913350869533	0.0356280865496466	1.27913350869533	515.455573397759	0	14.357137590934						337	8	4	NaN	NaN	NaN	2.2761E-10	1	35257	101.52	97.673	1	75123			5594	2175	4777	4893	5594	5594		
EYSLQVLK	8	Unmodified	_EYSLQVLK_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.276575	978.538597	-0.094819	-4.6488E-05	-5.0725	-0.0024869	-5.1673	-0.0025334	490.273571233428	9.5406	0.18621	9.5406	9.4519	9.6381	0	687	49	0.863749705078866	0.0325819812150898	0.863749705078866	350.836708114723	0	13.2341058597688						414	22	3	NaN	NaN	NaN	0.018576	1	3812	38.322	27.494	1	116880			5595	954	4778	4894	5595	5595		
EYSSELNAPSQESDSHPR	18	Unmodified	_EYSSELNAPSQESDSHPR_			0	0	0	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.299607	2031.87699	1.1247	0.00076285	1.6169	0.0010967	2.7415	0.0018596	678.30079826143	4.5829	0.088658	4.5829	4.5475	4.6361	0	666	40	0.877991458330206	0.0264342930913768	0.877991458330206	531.068917294815	0	15.9892573877542						224	11	4	NaN	NaN	NaN	9.5508E-08	1	32180	130.65	127.37	1	60365			5596	1147	4779	4895	5596	5596		
EYTACELMNIYK	12	Unmodified	_EYTACELMNIYK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.235394	1533.68435	-3.1775	-0.0016276	2.3064	0.0011814	-0.87112	-0.00044622	512.570733257143	15.704	0.044322	15.704	15.677	15.721	0	798	13	0.788241307691771	0.00818409423019217	0.788241307691771	477.830265380029	0	4.96118115068015						49	6	2	NaN	NaN	NaN	0.045503	1	19536	8.4737	0	1	9191.9			5597	3036	4780	4896	5597	5597		
EYTDVYPEIIER	12	Unmodified	_EYTDVYPEIIER_			0	0	0	Q9UNF1;Q9Y5V3	Q9UNF1	Q9UNF1	MAGED2;MAGED1	Melanoma-associated antigen D2;Melanoma-associated antigen D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.872296	1525.73004	1.5049	0.0011496	2.0397	0.0015581	3.5446	0.0027077	763.873960060806	12.094	0.28378	12.094	11.953	12.236	0	420	55	1.04379886199097	0.0361708486763277	1.04379886199097	421.854637761572	0	14.6185638071838						483	33	3	NaN	NaN	NaN	4.0881E-05	1	19290	99.34	81.004	1	210260			5598	3295	4781	4897	5598	5598		
EYTLDVYR	8	Unmodified	_EYTLDVYR_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.761289	1057.50803	0.85983	0.00045551	1.6345	0.00086588	2.4943	0.0013214	529.762153644276	8.8133	0.070948	8.8133	8.7866	8.8576	0	585	34	0.932794566565362	0.0222869832094168	0.932794566565362	378.488842502213	0	9.04312136900433						162	9	3	NaN	NaN	NaN	4.4852E-05	1	5651	143.56	115.85	1	50235			5599	1251	4782	4898	5599	5599		
EYVESQLQR	9	Unmodified	_EYVESQLQR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.288202	1150.56185	1.9246	0.0011091	-3.7882	-0.0021831	-1.8636	-0.001074	576.285321958198	5.1415	0.3547	5.1415	5.0085	5.3632	0	633	70	0.900343422309015	0.0466711740875143	0.900343422309015	364.941490666594	0	18.9175012785419						776	41	4	NaN	NaN	NaN	4.5796E-05	1	8078	117.39	86.795	1	527060			5600	2294	4783	4899	5600	5600		
EYWMDPEGEMK	11	Unmodified	_EYWMDPEGEMK_			0	0	0	P53999	P53999	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.786321	1413.55809	2.0645	0.0014612	-0.20809	-0.00014728	1.8564	0.001314	707.786545027918	11.358	0.25722	11.358	11.287	11.545	0	459	46	1.01763759082241	0.030215279505817	1.01763759082241	411.574797263469	0	12.2203106970682						935	30	5	NaN	NaN	NaN	2.5028E-07	1	15866	135.63	126.66	1	589870			5601	1248	4784	4900	5601	5601		
EYWMDPEGEMK	11	Oxidation (M)	_EYWM(Oxidation (M))DPEGEMK_	EYWM(1)DPEGEMK	EYWM(97)DPEGEM(-97)K	0	1	0	P53999	P53999	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.783778	1429.553	1.8465	0.0013217	-0.41278	-0.00029546	1.4338	0.0010263	715.78384173379	8.9198	0.17749	8.9198	8.8487	9.0262	0	480	40	1.00353128488872	0.0262119132032216	1.00353128488872	405.825621488003	0	10.6000342254069						583	21	5	NaN	NaN	NaN	0.00016386	1	16365	127.94	123.42	2	236570			5602	1248	4784	4901	5602	5602	440;441	
EYWMDPEGEMK	11	2 Oxidation (M)	_EYWM(Oxidation (M))DPEGEM(Oxidation (M))K_	EYWM(1)DPEGEM(1)K	EYWM(79)DPEGEM(79)K	0	2	0	P53999	P53999	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.781235	1445.54792	1.5906	0.0011513	0.48901	0.00035394	2.0796	0.0015052	723.781300682866	6.8175	0.11525	6.8175	6.7644	6.8796	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	403.336343772143	0	7.34074941850253						206	14	3	NaN	NaN	NaN	0.0011005	1	16837	78.816	75.713	1	45265			5603	1248	4784	4902	5603	5603	440;441	
FAAFFGNVPIFHIPGR	16	Unmodified	_FAAFFGNVPIFHIPGR_			0	0	0	Q92620	Q92620	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.322742	1788.9464	-2.2943	-0.0013704	2.3346	0.0013945	0.040399	2.4131E-05	597.658726341278	18.532	0.053194	18.532	18.506	18.559	0	762	19	0.812773098473386	0.0122556587589242	0.812773098473386	492.072727475077	0	7.41987578554819						92	7	3	NaN	NaN	NaN	0.0021132	1	26950	45.939	39.912	1	17788			5604	2421	4785	4903	5604	5604		
FAALDNEEEDKEEEIIK	17	Unmodified	_FAALDNEEEDKEEEIIK_			0	0	1	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.48112	2020.9477	1.1491	0.0011623	-0.33288	-0.0003367	0.81618	0.00082556	1011.98214199173	9.7002	0.062082	9.7002	9.6736	9.7356	0	63	58	1.28111162701928	0.037599703169712	1.28111162701928	516.622968731497	0	15.1625118883317						304	8	4	NaN	NaN	NaN	0.0016545	1	32002	65.173	55.594	1	69028			5605	2308	4786	4904	5605	5605		
FAALDNEEEDKEEEIIK	17	Unmodified	_FAALDNEEEDKEEEIIK_			0	0	1	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.656509	2020.9477	1.8169	0.0012258	-0.48348	-0.00032618	1.3334	0.00089959	674.990571010602	9.709	0.24827	9.709	9.6115	9.8598	0	528	40	0.971237000454584	0.0262699700789047	0.971237000454584	587.491706899628	0	15.8904464663459						583	29	5	NaN	NaN	NaN	1.1777E-06	1	32003	100.07	86.294	1	263860			5606	2308	4786	4904	5606	5606		
FAAYFQQGDMESNGK	15	Unmodified	_FAAYFQQGDMESNGK_			0	0	0	P06744;CON__Q3ZBD7	P06744;CON__Q3ZBD7	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.869762	1691.72497	2.0205	0.0017111	6.5621	0.0055572	8.5825	0.0072683	846.87340038148	9.2479	0.20398	9.2479	9.1947	9.3987	0	363	76	1.08195024817156	0.0501646095861548	1.08195024817156	436.887627070168	0	20.2562893090824						940	24	4	NaN	NaN	NaN	0.0002292	1	24243	88.24	77.99	1	303930		+	5607	546;42	4787	4905	5607	5607		
FADDTYTESYISTIGVDFK	19	Unmodified	_FADDTYTESYISTIGVDFK_			0	0	0	P62820;Q9H0U4	P62820;Q9H0U4	P62820	RAB1A;RAB1B	Ras-related protein Rab-1A;Ras-related protein Rab-1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.5046	2170.99465	0.1227	0.00013331	0.97979	0.0010645	1.1025	0.0011979	1087.007378879	16.847	0.25718	16.847	16.794	17.051	0	120	64	1.2434810169581	0.0416430502217877	1.2434810169581	501.211468261318	0	16.7851169900451						1064	30	5	NaN	NaN	NaN	8.4192E-11	1	34321	104	101.45	1	262940			5608	1398;2850	4788	4906	5608	5608		
FADEHVPGSPFTVK	14	Unmodified	_FADEHVPGSPFTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.924424	1529.75144	-1.4782	-0.00075525	-0.95899	-0.00048997	-2.4372	-0.0012452	510.923852930013	9.2656	0.15966	9.2656	9.2125	9.3721	0	843	31	0.757518876820989	0.0205030308233051	0.757518876820989	459.216951401185	0	12.4291811032818						458	19	4	NaN	NaN	NaN	0.0035661	1	19421	68.108	62.957	1	212720			5609	326	4789	4907	5609	5609		
FADEHVPGSPFTVK	14	Unmodified	_FADEHVPGSPFTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.924424	1529.75144	-1.648	-0.00084202	-0.3795	-0.00019389	-2.0275	-0.0010359	511.258336222953	9.2656	0.15966	9.2656	9.2125	9.3721	0	783	76	0.798467866007927	0.0510901515529528	0.798467866007927	484.040713086781	0	30.971457264828						688	19	4	NaN	NaN	NaN	0.022503	1	19423	55.754	53.083	1	207940			5610	326	4789	4907	5610	5610		
FADEHVPGSPFTVK	14	Unmodified	_FADEHVPGSPFTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.882998	1529.75144	1.6342	0.0012516	1.0355	0.0007931	2.6698	0.0020447	765.883684072704	9.2568	0.17738	9.2568	9.2125	9.3898	0	384	46	1.06790610341098	0.0301195105360905	1.06790610341098	431.587458666378	0	12.1726085907982						434	21	4	NaN	NaN	NaN	0.00033808	1	19426	70.195	68.353	1	104460			5611	326	4789	4907	5611	5611		
FADFMVK	7	Unmodified	_FADFMVK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.214932	856.415311	-1.4925	-0.00064059	-1.2249	-0.00052575	-2.7174	-0.0011663	429.214403374482	9.9573	0.16845	9.9573	9.9041	10.073	0	828	31	0.767766820543916	0.0204887515295875	0.767766820543916	312.466012755573	0	8.33851935963372						315	20	3	NaN	NaN	NaN	0.06376	1	1650	40.203	24.704	1	118230			5612	1035	4790	4908	5612	5612		
FADGEVVR	8	Unmodified	_FADGEVVR_			0	0	0	Q14739	Q14739	Q14739	LBR	Lamin-B receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.729792	891.445031	-0.030322	-1.3546E-05	0.99677	0.00044529	0.96645	0.00043174	446.730158138203	4.7071	0.28381	4.7071	4.6627	4.9465	0	759	37	0.814815566123307	0.024507911533163	0.814815566123307	331.408415448459	0	9.96805714672297						432	33	4	NaN	NaN	NaN	0.0019123	1	2184	92.677	63.366	1	133130			5613	1773	4791	4909	5613	5613		
FADGSAVVQSGDTAVMVTAVSK	22	Unmodified	_FADGSAVVQSGDTAVMVTAVSK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.53317	2139.05178	0.95888	0.0010265	0.98801	0.0010577	1.9469	0.0020842	1071.03388877537	12.644	0.053221	12.644	12.618	12.671	0	120	28	1.2434810169581	0.0178519070673964	1.2434810169581	501.259051582654	0	7.19627391452661						117	7	4	NaN	NaN	NaN	1.1789E-06	1	33866	72.075	61.749	1	16173			5614	2345	4792	4910	5614	5614		
FADGSIR	7	Unmodified	_FADGSIR_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	383.198128	764.381703	-0.29309	-0.00011231	0.65791	0.00025211	0.36482	0.0001398	383.198344284792	3.7406	0.11528	3.7406	3.714	3.8292	0	849	25	0.753417699604308	0.0164069966594707	0.753417699604308	307.207460062788	0	6.68998322399619						137	14	3	NaN	NaN	NaN	0.065843	1	712	44.42	37.07	1	31969			5615	919	4793	4911	5615	5615		
FADLSEAANR	10	Unmodified	_FADLSEAANR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.26727	1092.51999	1.0024	0.00054857	0.97549	0.00053386	1.9779	0.0010824	547.267976239777	6.25	0.42565	6.25	6.1436	6.5693	0	657	91	0.884090832094921	0.0610319114578003	0.884090832094921	358.579096788427	0	24.7539810292475						1640	49	5	NaN	NaN	NaN	2.1105E-14	1	6519	176.75	135.73	1	1692900			5616	588	4794	4912	5616	5616		
FADQDDIGNVSFDR	14	Unmodified	_FADQDDIGNVSFDR_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.857709	1597.70086	1.9872	0.0015894	0.053227	4.2574E-05	2.0404	0.001632	799.85739949497	10.72	0.14187	10.72	10.667	10.809	0	414	49	1.04781950764076	0.0321651748456302	1.04781950764076	423.308037369842	0	12.9943916259189						498	17	4	NaN	NaN	NaN	1.474E-05	1	21493	104.49	97.744	1	137010			5617	1962	4795	4913	5617	5617		
FADQHVPGSPFSVK	14	Unmodified	_FADQHVPGSPFSVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.924536	1514.75178	-1.6781	-0.00084897	0.90554	0.00045814	-0.77252	-0.00039084	505.924979160729	8.6091	0.10642	8.6091	8.5559	8.6623	0	786	55	0.796423123669906	0.0368079377727304	0.796423123669906	482.843977334284	0	22.3153880687976						305	13	3	NaN	NaN	NaN	0.072824	1	18969	25.588	23.286	1	58553			5618	792	4796	4914	5618	5618		
FADTRPWDPLNDMIQFEK	18	Unmodified	_FADTRPWDPLNDMIQFEK_			0	0	1	Q9BZF1	Q9BZF1	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.68949	2222.04664	-1.2274	-0.00091038	1.6357	0.0012132	0.40831	0.00030284	742.025137864565	17.273	0.079822	17.273	17.238	17.317	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	539.361668515534	0	12.2812067491991						250	10	4	NaN	NaN	NaN	1.7611E-05	1	34910	75.969	69.764	1	44918			5619	2809	4797	4915	5619	5619		
FAEAFEAIPR	10	Unmodified	_FAEAFEAIPR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.798206	1149.58186	0.91309	0.00052575	-0.16398	-9.442E-05	0.74911	0.00043133	575.797880715939	11.42	0.28388	11.42	11.341	11.624	0	597	106	0.924688525662974	0.0709525351197828	0.924688525662974	374.813202513377	0	28.7598971725334						1609	33	4	NaN	NaN	NaN	0.0031188	1	8056	74.269	56.873	1	764780			5620	1174	4798	4916	5620	5620		
FAEALGSTEAK	11	Unmodified	_FAEALGSTEAK_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.285128	1122.5557	1.2049	0.00067749	1.1783	0.00066255	2.3832	0.00134	562.286002119955	5.4785	0.23938	5.4785	5.3987	5.6381	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.631676467003	0	10.6912070034363						435	28	4	NaN	NaN	NaN	0.010453	1	7336	59.645	51.463	1	142160			5621	1459	4799	4917	5621	5621		
FAEALITFVSDNSVLHR	17	Unmodified	_FAEALITFVSDNSVLHR_			0	0	0	Q8WWI5	Q8WWI5	Q8WWI5	SLC44A1	Choline transporter-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.338897	1917.99486	-0.33924	-0.00021723	-1.0604	-0.00067902	-1.3996	-0.00089625	640.672586169025	17.832	0.062069	17.832	17.814	17.876	0	621	22	0.908462957275599	0.0142062317048673	0.908462957275599	549.721297702988	0	8.59635284600813						107	8	3	NaN	NaN	NaN	0.00012935	1	30019	58.338	49.182	1	22261			5622	2390	4800	4918	5622	5622		
FAEASEEAVSVQR	13	Unmodified	_FAEASEEAVSVQR_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.846613	1421.67867	2.0004	0.001424	-1.4182	-0.0010096	0.58219	0.00041443	711.84503955712	6.2323	0.15079	6.2323	6.1791	6.3299	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.292779901522	0	8.15036179607188						263	18	3	NaN	NaN	NaN	1.1869E-11	1	16137	147.19	126.1	1	69039			5623	914	4801	4919	5623	5623		
FAEHGETLAMK	11	Unmodified	_FAEHGETLAMK_			0	0	0	Q9BXJ9;Q6N069	Q9BXJ9	Q9BXJ9	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.869262	1232.58596	-0.91959	-0.00037875	0.93885	0.00038668	0.01926	7.9325E-06	411.86960028054	4.9731	0.11526	4.9731	4.9376	5.0529	0	774	28	0.804600385996946	0.0183924424534009	0.804600385996946	488.809903675009	0	11.1737555443196						184	14	3	NaN	NaN	NaN	0.042577	1	10385	26.947	22.407	1	57664			5624	2785	4802	4920	5624	5624		
FAEHGETLAMK	11	Unmodified	_FAEHGETLAMK_			0	0	0	Q9BXJ9;Q6N069	Q9BXJ9	Q9BXJ9	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.300255	1232.58596	2.2986	0.0014189	-0.26878	-0.00016592	2.0298	0.001253	617.300356506048	4.9731	0.11526	4.9731	4.9287	5.044	0	543	52	0.961130371139249	0.0343815779756202	0.961130371139249	389.273406074532	0	13.9250973298479						271	14	3	NaN	NaN	NaN	3.119E-05	1	10386	121.8	92.487	1	84234			5625	2785	4802	4920	5625	5625		
FAEHVFR	7	Unmodified	_FAEHVFR_			0	0	0	P37235;P84074;P61601	P37235	P37235	HPCAL1;HPCA;NCALD	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.235045	904.455536	0.43423	0.00019681	1.3006	0.00058948	1.7348	0.00078629	453.235921810854	5.0351	0.19506	5.0351	4.9997	5.1947	0	741	31	0.827064408645228	0.0204033881937532	0.827064408645228	336.316964758765	0	8.29682128307059						260	23	3	NaN	NaN	NaN	0.023915	1	2403	61.494	36.675	1	59159			5626	999	4803	4921	5626	5626		
FAELAQIYAQR	11	Unmodified	_FAELAQIYAQR_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.348594	1308.68264	0.91015	0.00059647	-1.9788	-0.0012968	-1.0686	-0.00070033	655.347584049711	11.509	0.14194	11.509	11.447	11.589	0	534	52	0.967195187796614	0.0343387884231721	0.967195187796614	391.477382154298	0	13.8988067433195						325	17	3	NaN	NaN	NaN	1.3327E-05	1	12623	122.44	108.44	1	78378			5627	3001	4804	4922	5627	5627		
FAELETILGDIDR	13	Unmodified	_FAELETILGDIDR_			0	0	0	Q9BZJ0	Q9BZJ0	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.388113	1490.76167	0.33226	0.000248	-1.6175	-0.0012072	-1.2852	-0.00095925	746.386798639077	18.532	0.10641	18.532	18.488	18.594	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	411.368219983014	0	8.95706208757395						242	13	4	NaN	NaN	NaN	3.8811E-06	1	18260	110.52	91.198	1	58541			5628	2813	4805	4923	5628	5628		
FAELVYTGFWHSPECEFVR	19	Unmodified	_FAELVYTGFWHSPECEFVR_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	792.036889	2373.08884	0.33683	0.00026678	-1.6692	-0.0013221	-1.3324	-0.0010553	792.369924132748	16.422	0.14188	16.422	16.377	16.519	0	567	103	0.944945209309785	0.0688823530687102	0.944945209309785	571.009549023727	0	41.6240867448673						1144	17	6	NaN	NaN	NaN	5.8799E-15	1	36225	130.78	120.46	1	528030			5629	488	4806	4924	5629	5629		
FAEPIGGFQCVFPGC	15	Unmodified	_FAEPIGGFQCVFPGC_			0	0	0	Q9Y570	Q9Y570	Q9Y570	PPME1	Protein phosphatase methylesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.376168	1684.73778	0.9757	0.00082289	0.82863	0.00069884	1.8043	0.0015217	843.377086251222	18.275	0.11528	18.275	18.222	18.337	0	408	34	1.0518390438467	0.0221028774104899	1.0518390438467	424.743163295835	0	8.92536374666065						399	14	4	NaN	NaN	NaN	6.3539E-05	1	24034	96.957	95.904	1	96914			5630	3424	4807	4925	5630	5630		
FAEQTLR	7	Unmodified	_FAEQTLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.732335	863.450116	-0.51127	-0.00022124	-6.0017	-0.0025971	-6.513	-0.0028184	432.729487906466	4.3081	0.22167	4.3081	4.2371	4.4588	0	765	40	0.810730346695089	0.0265594729545963	0.810730346695089	329.908968076854	0	10.8077961443466						413	26	3	NaN	NaN	NaN	0.026348	1	1769	58.687	20.365	1	137690			5631	1816	4808	4926	5631	5631		
FAEVECLAESHQHLSK	16	Unmodified	_FAEVECLAESHQHLSK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.968475	1883.8836	0.64141	0.00040342	0.5761	0.00036235	1.2175	0.00076577	629.303317517611	7.0214	0.11537	7.0214	6.986	7.1014	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	548.564494678769	0	12.2829515267131						323	14	5	NaN	NaN	NaN	8.4218E-06	1	29232	92.747	83.591	1	104440			5632	1776	4809	4927	5632	5632		
FAEVECLAESHQHLSK	16	Unmodified	_FAEVECLAESHQHLSK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.949075	1883.8836	1.8036	0.0017007	0.80664	0.00076062	2.6102	0.0024613	942.950157799765	7.0303	0.053188	7.0303	6.9949	7.0481	0	186	25	1.1997861197946	0.0159108621736821	1.1997861197946	484.067604728997	0	6.41942160733282						94	7	3	NaN	NaN	NaN	5.246E-09	1	29234	123.99	113.97	1	15701			5633	1776	4809	4927	5633	5633		
FAEVTQEVEVARPVDK	16	Unmodified	_FAEVTQEVEVARPVDK_			0	0	1	Q02241	Q02241	Q02241	KIF23	Kinesin-like protein KIF23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.319502	1815.93668	0.096772	5.8675E-05	0.85466	0.00051819	0.95143	0.00057687	606.654141582644	8.4672	0.070914	8.4672	8.4318	8.5027	0	660	28	0.882057989648486	0.0182955837794518	0.882057989648486	533.958515827568	0	11.0753293725827						159	9	3	NaN	NaN	NaN	0.00015927	1	27635	89.382	88.575	1	47281			5634	1527	4810	4928	5634	5634		
FAEVYFAQSQQK	12	Unmodified	_FAEVYFAQSQQK_			0	0	0	Q14165	Q14165	Q14165	MLEC	Malectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.356616	1444.69868	1.8512	0.0013391	2.9557	0.002138	4.8069	0.0034771	723.358462715603	9.2036	0.13303	9.2036	9.1592	9.2923	0	384	64	1.06790610341098	0.0421789590923636	1.06790610341098	431.81523961166	0	17.0553546504359						421	16	3	NaN	NaN	NaN	0.00066453	1	16814	78.932	61.94	1	86379			5635	1732	4811	4929	5635	5635		
FAEWCLEYGEHGCR	14	Unmodified	_FAEWCLEYGEHGCR_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.252218	1812.73482	0.33274	0.00020139	1.6077	0.00097307	1.9405	0.0011745	605.25348200763	9.9839	0.15959	9.9839	9.9041	10.064	0	633	31	0.900343422309015	0.0203016545312636	0.900343422309015	545.034985490749	0	12.2898792935122						309	19	5	NaN	NaN	NaN	7.0582E-06	1	27540	94.791	87.585	1	104710			5636	233	4812	4930	5636	5636		
FAEYGEIK	8	Unmodified	_FAEYGEIK_			0	0	0	Q9Y5S9	Q9Y5S9	Q9Y5S9	RBM8A	RNA-binding protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.739825	955.465098	-0.19211	-9.1972E-05	-0.13893	-6.6514E-05	-0.33105	-0.00015849	478.739548521097	6.2057	0.31923	6.2057	6.1259	6.4451	0	750	49	0.820941264895493	0.0326772198028354	0.820941264895493	333.5603861339	0	13.2772300788214						519	37	3	NaN	NaN	NaN	0.018128	1	3339	47.349	35.7	1	333710			5637	3442	4813	4931	5637	5637		
FAFQAEVNR	9	Unmodified	_FAFQAEVNR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.274898	1080.53524	0.90437	0.00048951	1.056	0.00057159	1.9604	0.0010611	541.275454933087	8.4406	0.37247	8.4406	8.2632	8.6357	0	666	49	0.877991458330206	0.032536775783098	0.877991458330206	356.15443468711	0	13.1984393192266						1067	43	4	NaN	NaN	NaN	5.9507E-07	1	6215	155.82	126.72	1	795620			5638	700	4814	4932	5638	5638		
FAFSPLSEEEEEDEQK	16	Unmodified	_FAFSPLSEEEEEDEQK_			0	0	0	Q8NBN3	Q8NBN3	Q8NBN3	TMEM87A	Transmembrane protein 87A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.417993	1912.82143	1.0133	0.00097012	2.0224	0.0019363	3.0356	0.0029064	957.419882275084	11.953	0.13303	11.953	11.89	12.024	0	261	43	1.14997238118939	0.0279513333515433	1.14997238118939	463.918353877526	0	11.2760417286879						374	16	4	NaN	NaN	NaN	1.8659E-06	1	29889	72.327	70.617	1	83380			5639	2291	4815	4933	5639	5639		
FAGGDYTTTIEAFISASGR	19	Unmodified	_FAGGDYTTTIEAFISASGR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.473437	1962.93232	1.1985	0.0011775	0.73791	0.00072497	1.9364	0.0019025	982.474206970534	18.692	0.20395	18.692	18.648	18.851	0	240	58	1.16393748060522	0.0378896560642905	1.16393748060522	469.46577819579	0	15.2825191783871						728	24	5	NaN	NaN	NaN	1.2272E-14	1	30977	169.05	159.47	1	216230			5640	565	4816	4934	5640	5640		
FAGLHFFNPVPVMK	14	Unmodified	_FAGLHFFNPVPVMK_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.28664	1602.83809	0.1932	0.00010342	-2.2472	-0.0012029	-2.054	-0.0010995	535.285543310416	15.553	0.1862	15.553	15.5	15.686	0	714	91	0.845418525735192	0.0610742960217544	0.845418525735192	512.293402629486	0	37.0088399647693						1024	22	5	NaN	NaN	NaN	7.1843E-05	1	21686	97.277	77.095	1	570230			5641	1910	4817	4935	5641	5641		
FAGLHFFNPVPVMK	14	Oxidation (M)	_FAGLHFFNPVPVM(Oxidation (M))K_	FAGLHFFNPVPVM(1)K	FAGLHFFNPVPVM(49)K	0	1	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.618278	1618.83301	-0.24077	-0.00013016	-2.039	-0.0011023	-2.2797	-0.0012325	540.617466567674	14.001	0.133	14.001	13.948	14.081	0	684	43	0.86578508874114	0.028505272317873	0.86578508874114	524.590453604247	0	17.2717154982287						455	16	4	NaN	NaN	NaN	0.027108	1	22160	49.16	45.815	1	119920			5642	1910	4817	4936	5642	5642	581	
FAGSAGWEGTESLK	14	Unmodified	_FAGSAGWEGTESLK_			0	0	0	Q13123	Q13123	Q13123	IK	Protein Red	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.343706	1438.67286	1.733	0.0012484	0.11703	8.4303E-05	1.85	0.0013327	720.343799268563	9.106	0.17736	9.106	9.0351	9.2125	0	471	40	1.00957851518677	0.0262010489671465	1.00957851518677	408.246302647637	0	10.594997026406						246	21	2	NaN	NaN	NaN	0.00020083	1	16628	86.243	74.887	1	93093			5643	1629	4818	4937	5643	5643		
FAGVFHVEK	9	Unmodified	_FAGVFHVEK_			0	0	0	P16070	P16070	P16070	CD44	CD44 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.276909	1032.53927	1.292	0.00066831	0.35505	0.00018366	1.647	0.00085197	517.277057904156	6.8264	0.21277	6.8264	6.7644	6.9771	0	648	40	0.890187667287968	0.0264159589549013	0.890187667287968	361.313016859386	0	10.7218176278571						488	25	4	NaN	NaN	NaN	0.0011344	1	5067	74.486	39.555	1	265310			5644	721	4819	4938	5644	5644		
FAGYVTSIAATELEDDDDDYSSSTSLLGQK	30	Unmodified	_FAGYVTSIAATELEDDDDDYSSSTSLLGQK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1066.82101	3197.44119	0.19299	0.00020588	3.8003	0.0040543	3.9933	0.0042602	1067.49660240993	16.972	0.21285	16.972	16.856	17.069	0	165	82	1.21370334790578	0.0536218934934785	1.21370334790578	732.312721447475	0	32.353865399755						459	25	5	NaN	NaN	NaN	9.9254E-05	1	38455	86.838	85.465	1	81387			5645	343	4820	4939	5645	5645		
FAHIDGDHLTLLNVYHAFK	19	Unmodified	_FAHIDGDHLTLLNVYHAFK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	553.539095	2210.12727	-0.21924	-0.00012136	-0.62215	-0.00034438	-0.84138	-0.00046574	553.789228494965	14.134	0.16849	14.134	14.09	14.258	0	666	37	0.877991458330206	0.0243991920216602	0.877991458330206	707.702556413922	0	19.6669004058454						455	20	6	NaN	NaN	NaN	3.1207E-05	1	34795	83.214	76.692	1	145950			5646	181	4821	4940	5646	5646		
FAHIDGDHLTLLNVYHAFK	19	Unmodified	_FAHIDGDHLTLLNVYHAFK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.716367	2210.12727	1.4718	0.0010857	1.7419	0.001285	3.2137	0.0023708	738.051807487336	14.134	0.16849	14.134	14.09	14.258	0	411	43	1.04982941439551	0.0281406425229616	1.04982941439551	634.660839862211	0	17.0120626960796						635	20	6	NaN	NaN	NaN	1.1892E-26	1	34796	200.9	198.8	1	350160			5647	181	4821	4940	5647	5647		
FAHTNVESLVNEYDDNGEGIILFR	24	Unmodified	_FAHTNVESLVNEYDDNGEGIILFR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.111951	2751.31402	0.72006	0.0006611	-2.2324	-0.0020496	-1.5123	-0.0013885	918.444595724651	17.229	0.15963	17.229	17.158	17.317	0	489	97	0.997481546940468	0.0644994115412708	0.997481546940468	602.273677132804	0	38.9443773481472						1303	19	6	NaN	NaN	NaN	1.1807E-13	1	37758	129.82	127.98	1	358020			5648	904	4822	4941	5648	5648		
FAHTNVESLVNEYDDNGEGIILFRPSHLTNK	31	Unmodified	_FAHTNVESLVNEYDDNGEGIILFRPSHLTNK_			0	0	1	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	883.189117	3528.72736	1.6858	0.0014889	-1.2188	-0.0010764	0.46706	0.00041251	883.689251187725	15.225	0.088649	15.225	15.189	15.278	0	432	46	1.035754240522	0.0301860841315895	1.035754240522	832.917898922665	0	24.2746095433943						476	11	6	NaN	NaN	NaN	5.4604E-10	1	38663	65.574	63.486	1	103910			5649	904	4823	4942	5649	5649		
FAIGSQVSEHSIIK	14	Unmodified	_FAIGSQVSEHSIIK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.943707	1514.80929	-1.4976	-0.00075771	0.2692	0.0001362	-1.2284	-0.00062151	505.943636684988	9.4076	0.15074	9.4076	9.3721	9.5228	0	759	55	0.814815566123307	0.0367823368295792	0.814815566123307	493.994516521407	0	22.2998595683502						423	18	4	NaN	NaN	NaN	0.024295	1	18977	42.061	20.973	1	160870			5650	951	4824	4943	5650	5650		
FAIGSQVSEHSIIK	14	Unmodified	_FAIGSQVSEHSIIK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.411923	1514.80929	1.957	0.0014842	0.71229	0.00054021	2.6693	0.0020244	758.412403520894	9.4164	0.16847	9.4164	9.3721	9.5406	0	336	37	1.09998710857178	0.024034244886211	1.09998710857178	444.592117829535	0	9.71414642146863						352	20	4	NaN	NaN	NaN	2.3533E-06	1	18979	128.57	102.71	1	111550			5651	951	4824	4943	5651	5651		
FALGIFAINEAVESGDVGK	19	Unmodified	_FALGIFAINEAVESGDVGK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.004373	1935.99419	1.4409	0.0013962	-1.0933	-0.0010595	0.34753	0.00033676	969.504942323846	18.869	0.27485	18.869	18.825	19.1	0	225	55	1.17390432875292	0.0358683429143114	1.17390432875292	473.532093010974	0	14.4686505339773						693	32	5	NaN	NaN	NaN	2.2621E-10	1	30443	95.345	84.374	1	233280			5652	1095	4825	4944	5652	5652		
FALITWIGENVSGLQR	16	Unmodified	_FALITWIGENVSGLQR_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.996583	1802.96792	-0.76013	-0.0004576	1.3589	0.00081807	0.5988	0.00036048	601.997826998274	19.747	0.035461	19.747	19.738	19.774	0	651	19	0.888155670855968	0.0121945167526911	0.888155670855968	537.679055956344	0	7.38241782446948						72	5	4	NaN	NaN	NaN	0.0073018	1	27301	71.896	71.157	1	13600			5653	1715	4826	4945	5653	5653		
FALITWIGENVSGLQR	16	Unmodified	_FALITWIGENVSGLQR_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.491236	1802.96792	1.0916	0.00098518	0.52144	0.0004706	1.6131	0.0014558	902.491695536419	19.747	0.044336	19.747	19.738	19.782	0	180	28	1.203763835057	0.0179009488089314	1.203763835057	485.831772002163	0	7.22471420646337						97	6	3	NaN	NaN	NaN	0.0028313	1	27302	38.584	34.848	1	19983			5654	1715	4826	4945	5654	5654		
FALITWIGENVSGLQR	16	Unmodified	_FALITWIGENVSGLQR_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.491236	1802.96792	1.7608	0.0015891	-0.011522	-1.0399E-05	1.7492	0.0015787	902.992010993476	19.756	0.10642	19.756	19.72	19.827	0	291	49	1.12999890578964	0.0319751569617757	1.12999890578964	456.060696465529	0	12.9049791808354						418	13	5	NaN	NaN	NaN	2.6484E-12	1	27303	135.5	126.24	1	165390			5655	1715	4826	4945	5655	5655		
FALNHPELVEGLVLINVDPCAK	22	Unmodified	_FALNHPELVEGLVLINVDPCAK_			0	0	0	Q9UGV2	Q9UGV2	Q9UGV2	NDRG3	Protein NDRG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.770032	2447.28827	-0.13134	-0.00010728	-1.6083	-0.0013136	-1.7397	-0.0014209	817.102990103709	18.231	0.1064	18.231	18.178	18.284	0	510	28	0.983355730988811	0.0181743257356556	0.983355730988811	594.115335602554	0	10.9804064729775						199	13	4	NaN	NaN	NaN	0.00044417	1	36567	28.263	26.639	1	41930			5656	3206	4827	4946	5656	5656		
FALTFGLDQLK	11	Unmodified	_FALTFGLDQLK_			0	0	0	Q8N3U4	Q8N3U4	Q8N3U4	STAG2	Cohesin subunit SA-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.850438	1251.68632	-0.10844	-6.7977E-05	-0.48015	-0.00030098	-0.58859	-0.00036896	626.850171182412	16.989	0.10639	16.989	16.936	17.043	0	522	37	0.975277694896658	0.0242441707123356	0.975277694896658	394.936537554536	0	9.81762311094934						323	13	4	NaN	NaN	NaN	3.6734E-05	1	10972	103.8	0	1	101150			5657	2249	4828	4947	5657	5657		
FAMEPEEFDSDTLR	14	Unmodified	_FAMEPEEFDSDTLR_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.869427	1685.7243	1.9971	0.0016853	-0.34105	-0.0002878	1.656	0.0013975	843.8693360892	13.026	0.23053	13.026	12.928	13.159	0	360	55	1.08395544855938	0.0361010836697162	1.08395544855938	437.710004179635	0	14.5779104712855						988	27	6	NaN	NaN	NaN	2.2682E-11	1	24066	166.65	155.29	1	596810			5658	680	4829	4948	5658	5658		
FAMEPEEFDSDTLR	14	Oxidation (M)	_FAM(Oxidation (M))EPEEFDSDTLR_	FAM(1)EPEEFDSDTLR	FAM(110)EPEEFDSDTLR	0	1	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.866885	1701.71922	2.1889	0.0018647	0.45072	0.00038395	2.6396	0.0022486	851.867282957458	10.161	0.1685	10.161	10.09	10.259	0	369	46	1.07793901817685	0.030094602206975	1.07793901817685	435.247156347387	0	12.151513036559						643	20	4	NaN	NaN	NaN	3.5845E-07	1	24542	112.7	84.056	1	174120			5659	680	4829	4949	5659	5659	213	
FAMVAPDVQIEDGK	14	Unmodified	_FAMVAPDVQIEDGK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.376691	1518.73883	1.6732	0.0012723	0.52742	0.00040103	2.2006	0.0016733	760.378370911908	12.431	0.20393	12.431	12.325	12.529	0	408	58	1.0518390438467	0.0381935145621466	1.0518390438467	425.121703036088	0	15.4366697553013						661	24	5	NaN	NaN	NaN	0.00020515	1	19090	66.953	40.488	1	183920			5660	3188	4830	4950	5660	5660		
FANDGSFLQQFLK	13	Unmodified	_FANDGSFLQQFLK_			0	0	0	Q8IWZ8	Q8IWZ8	Q8IWZ8	SUGP1	SURP and G-patch domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.885541	1513.75653	1.0701	0.000811	-0.13482	-0.00010218	0.93526	0.00070882	757.885931317743	17.787	0.10641	17.787	17.743	17.849	0	438	31	1.03173026378327	0.0201226639147589	1.03173026378327	417.006737155388	0	8.13321729188971						196	13	4	NaN	NaN	NaN	0.00041851	1	18925	60	53.253	1	41452			5661	2208	4831	4951	5661	5661		
FANHVSGTLETALGK	15	Unmodified	_FANHVSGTLETALGK_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.607095	1543.79946	-1.5049	-0.00077596	-1.1408	-0.0005882	-2.6457	-0.0013642	515.606838689661	8.9819	0.062081	8.9819	8.9553	9.0174	0	804	22	0.78414869089473	0.0143271514943355	0.78414869089473	475.321517820525	0	8.6845817297251						118	8	3	NaN	NaN	NaN	0.0033002	1	19857	45.183	35.922	1	28135			5662	259	4832	4952	5662	5662		
FANSCDSVYSACTDGTVK	18	Unmodified	_FANSCDSVYSACTDGTVK_			0	0	0	Q96FK6	Q96FK6	Q96FK6	WDR89	WD repeat-containing protein 89	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.416947	1980.81934	1.6702	0.0016559	-0.76729	-0.00076071	0.9029	0.00089515	991.918184739804	7.066	0.035565	7.066	7.0481	7.0836	0	225	22	1.17390432875292	0.0139497537603019	1.17390432875292	473.455819487336	0	5.62617577639111						68	5	3	NaN	NaN	NaN	1.1187E-06	1	31294	96.27	94.429	1	9498.9			5663	2526	4833	4953	5663	5663		
FANYIDK	7	Unmodified	_FANYIDK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.721436	869.428318	-1.0704	-0.00046638	-0.21338	-9.2976E-05	-1.2838	-0.00055936	435.721419956297	5.5937	0.40794	5.5937	5.5405	5.9485	0	828	64	0.767766820543916	0.0429994348978765	0.767766820543916	312.392272070116	0	17.4957953457306						1169	47	4	NaN	NaN	NaN	0.022472	1	1851	70.67	52.975	1	735390			5664	588	4834	4954	5664	5664		
FAQFFLCPLFDESCK	15	Unmodified	_FAQFFLCPLFDESCK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.93659	1907.85863	0.77582	0.00074086	0.23106	0.00022065	1.0069	0.00096151	955.438593303476	19.153	0.088678	19.153	19.126	19.215	0	252	31	1.15595906938629	0.0199542576953273	1.15595906938629	466.342227394763	0	8.05003674099675						287	11	5	NaN	NaN	NaN	4.5188E-08	1	29771	93.162	86.307	1	78747			5665	702	4835	4955	5665	5665		
FAQHGTFEYEYSQR	14	Unmodified	_FAQHGTFEYEYSQR_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.894626	1761.7747	3.3474	0.0029521	-1.5734	-0.0013876	1.774	0.0015645	881.893690923874	6.5693	0.28375	6.5693	6.5338	6.8175	0	327	43	1.10599442759226	0.0280322312253412	1.10599442759226	446.452295131327	0	11.3156573450833						777	33	5	NaN	NaN	NaN	7.9852E-08	1	26182	119.52	98.371	1	352960			5666	814	4836	4956	5666	5666		
FAQHGTFEYEYSQR	14	Unmodified	_FAQHGTFEYEYSQR_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.265509	1761.7747	0.63426	0.00037312	1.4232	0.00083721	2.0575	0.0012103	588.266167324344	6.5781	0.1951	6.5781	6.5338	6.7289	0	687	70	0.863749705078866	0.046852880285563	0.863749705078866	522.997176655762	0	28.36924164889						1004	23	5	NaN	NaN	NaN	5.6809E-17	1	26183	224.09	207.81	1	429220			5667	814	4836	4956	5667	5667		
FAQLEFQLGDAER	13	Unmodified	_FAQLEFQLGDAER_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.37808	1522.74161	1.3922	0.0010614	0.62658	0.00047769	2.0188	0.0015391	762.379259035746	13.673	0.15075	13.673	13.611	13.762	0	420	40	1.04379886199097	0.0261323987291064	1.04379886199097	421.862086943203	0	10.5616787545302						325	18	3	NaN	NaN	NaN	0.00036346	1	19201	84.999	63.638	1	73535			5668	1766	4837	4957	5668	5668		
FAQPGSFEYEYAMR	14	Unmodified	_FAQPGSFEYEYAMR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.377223	1694.73989	1.6948	0.0014378	1.4731	0.0012497	3.1679	0.0026876	848.378623886535	11.917	0.22169	11.917	11.864	12.086	0	336	76	1.09998710857178	0.0500748206757269	1.09998710857178	444.164444367979	0	20.2197414214596						1457	26	6	NaN	NaN	NaN	1.0704E-05	1	24324	128.97	114	1	1021400			5669	1824	4838	4958	5669	5669		
FAQPGSFEYEYAMR	14	Oxidation (M)	_FAQPGSFEYEYAM(Oxidation (M))R_	FAQPGSFEYEYAM(1)R	FAQPGSFEYEYAM(50)R	0	1	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.37468	1710.73481	2.8548	0.0024448	0.8334	0.0007137	3.6882	0.0031585	856.877146894297	10.17	0.1419	10.17	10.126	10.268	0	345	46	1.09397730668811	0.0300614391365961	1.09397730668811	441.70424296457	0	12.1376057209578						506	17	4	NaN	NaN	NaN	0.04927	1	24767	50.116	46.38	1	182180			5670	1824	4838	4959	5670	5670	574	
FAQVVLQDLDK	11	Unmodified	_FAQVVLQDLDK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.350803	1274.68705	0.87444	0.0005582	-0.82161	-0.00052447	0.05283	3.3724E-05	638.350468929584	12.245	0.15077	12.245	12.21	12.361	0	519	25	0.97729762293174	0.0161560731115115	0.97729762293174	395.676581387653	0	6.54107779187586						206	18	2	NaN	NaN	NaN	0.0016611	1	11630	72.922	59.648	1	77520			5671	1585	4839	4960	5671	5671		
FASENDLPEWK	11	Unmodified	_FASENDLPEWK_			0	0	0	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.314417	1334.61428	1.7686	0.001182	2.3755	0.0015876	4.1441	0.0027696	668.315143472008	10.48	0.20398	10.48	10.41	10.613	0	534	58	0.967195187796614	0.0384052068408169	0.967195187796614	391.397891593111	0	15.5415547692468						895	24	6	NaN	NaN	NaN	3.1747E-05	1	13417	135.28	115.1	1	646050			5672	1066	4840	4961	5672	5672		
FASFIDK	7	Unmodified	_FASFIDK_			0	0	0	P05787;CON__P05787;CON__Q9H552;CON__Q8BGZ7;CON__P04259;P02538;P04259;P48668;O95678;CON__O95678;CON__Q5XQN5;CON__P50446;CON__Q922U2;CON__P02538;CON__P48668;CON__P12035;CON__P13647;CON__Q01546;CON__Q8VED5;P13647;P12035;Q01546;CON__Q6IFZ6;P35908;Q7Z794;CON__P35908;CON__P35908v2;CON__Q3TTY5;CON__Q7Z794;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__P07744;CON__Q14CN4-1;Q7RTS7;Q3SY84;CON__Q9R0H5;CON__Q3SY84;CON__Q6IME9;CON__Q7RTS7;CON__Q6NXH9;CON__Q32MB2;Q14CN4;Q86Y46;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;P19013;CON__P19013	P05787;P08729	P05787	KRT8;KRT6A;KRT6B;KRT6C;KRT75;KRT5;KRT3;KRT76;KRT2;KRT77;KRT84;KRT74;KRT71;KRT72;KRT73;KRT7;KRT4	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cuticular Hb4;Keratin, type II cytoskeletal 74;Keratin, type II cytoskeletal 71;Keratin, type II cytoskeletal 72;Keratin, type II cytoskeletal 73;Keratin, type II cytoskeletal 7;Keratin, type II cytoskeletal 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	414.218529	826.422505	-0.96199	-0.00039847	-1.1272	-0.00046689	-2.0892	-0.00086537	414.218065513182	8.0591	0.29284	8.0591	7.9881	8.281	0	858	61	0.747263789720611	0.0410175083827131	0.747263789720611	304.295608193119	0	16.7028669548549						656	34	4	NaN	NaN	NaN	0.013975	1	1255	81.32	45.687	1	333720		+	5673	28;39	4841	4962	5673	5673		
FASFPDYLVIQIK	13	Unmodified	_FASFPDYLVIQIK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.924135	1539.83372	0.77355	0.00059635	-1.3261	-0.0010223	-0.55251	-0.00042594	770.92224180365	18.24	0.070927	18.24	18.213	18.284	0	369	25	1.07793901817685	0.0160471329064824	1.07793901817685	435.616624691416	0	6.48496599048747						181	9	4	NaN	NaN	NaN	0.00030484	1	19726	53.028	21.603	1	44622			5674	1072	4842	4963	5674	5674		
FASGGCDNLIK	11	Unmodified	_FASGGCDNLIK_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.284605	1180.55466	1.476	0.00087271	0.75067	0.00044386	2.2266	0.0013166	591.285229803311	6.4983	0.29263	6.4983	6.4096	6.7023	0	615	64	0.912521036363781	0.042577380990271	0.912521036363781	369.766180496348	0	17.2529453206315						1071	34	4	NaN	NaN	NaN	0.00023345	1	8887	107.08	70.868	1	374910			5675	1275	4843	4964	5675	5675		
FASHCLMNHPDLAK	14	Unmodified	_FASHCLMNHPDLAK_			0	0	0	Q9NTI5;Q29RF7	Q9NTI5;Q29RF7	Q29RF7	PDS5B;PDS5A	Sister chromatid cohesion protein PDS5 homolog B;Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.593915	1639.75992	0.91208	0.00049945	1.7636	0.00096573	2.6757	0.0014652	548.264614653335	5.6381	0.12418	5.6381	5.5671	5.6913	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	530.696793915618	0	9.85752738011308						193	15	4	NaN	NaN	NaN	0.0032965	1	22746	54.199	50.463	1	47463			5676	1921;3041	4844	4965	5676	5676		
FASYLTFSPSEVK	13	Unmodified	_FASYLTFSPSEVK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.374475	1474.7344	1.4455	0.0010673	1.5919	0.0011755	3.0374	0.0022427	738.375236756861	13.46	0.29266	13.46	13.318	13.611	0	435	76	1.03374239103424	0.0502754509302745	1.03374239103424	417.920155099366	0	20.3253000290042						679	34	2	NaN	NaN	NaN	6.6938E-06	1	17735	101.48	79.438	1	293060			5677	1259	4845	4966	5677	5677		
FATEAAITILR	11	Unmodified	_FATEAAITILR_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.348063	1204.68157	0.64882	0.00039146	0.13695	8.2629E-05	0.78577	0.00047409	603.348014039986	13.07	0.20396	13.07	13.008	13.212	0	498	91	0.991429299781895	0.0606020975624142	0.991429299781895	401.647957821487	0	24.5511290931153						882	24	3	NaN	NaN	NaN	4.5187E-05	1	9606	109.88	101.4	1	267940			5678	747	4846	4967	5678	5678		
FATEAAITILR	11	Unmodified	_FATEAAITILR_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.348063	1204.68157	-0.086148	-5.1977E-05	1.0136	0.00061157	0.92749	0.0005596	603.348479431216	13.052	0.044331	13.052	13.026	13.07	0	591	22	0.928742107665821	0.0141865549073745	0.928742107665821	376.252111228746	0	5.74725878250246						66	6	2	NaN	NaN	NaN	0.041488	1	9607	39.039	33.73	1	31464			5679	747	4846	4967	5679	5679		
FATEYCNTIEGTAK	14	Unmodified	_FATEYCNTIEGTAK_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.866688	1603.71882	2.6402	0.0021197	0.60459	0.0004854	3.2448	0.0026051	802.867333819863	7.7931	0.15964	7.7931	7.7487	7.9083	0	414	40	1.04781950764076	0.0261287930352008	1.04781950764076	423.294383471845	0	10.555416517871						428	19	4	NaN	NaN	NaN	5.4288E-08	1	21697	126.21	123.91	1	119650			5680	79	4847	4968	5680	5680		
FATFVFNVFDENK	13	Unmodified	_FATFVFNVFDENK_			0	0	0	P62166	P62166	P62166	NCS1	Neuronal calcium sensor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.385374	1576.75619	0.48818	0.00038536	1.6455	0.0012989	2.1337	0.0016843	789.386523637431	18.222	0.088682	18.222	18.186	18.275	0	393	37	1.0618830335572	0.0241005916389636	1.0618830335572	429.038517662507	0	9.73749630120011						176	11	3	NaN	NaN	NaN	0.015326	1	20872	36.952	26.701	1	38525			5681	1367	4848	4969	5681	5681		
FATVEVTDKPVDEALR	16	Unmodified	_FATVEVTDKPVDEALR_			0	0	1	Q9NRV9	Q9NRV9	Q9NRV9	HEBP1	Heme-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.315869	1788.92578	-0.16965	-0.00010134	0.29792	0.00017795	0.12826	7.6614E-05	597.650386240498	10.046	0.088676	10.046	10.01	10.099	0	702	43	0.853568545818287	0.0285211140004684	0.853568545818287	516.771343675043	0	17.2673823061291						332	11	4	NaN	NaN	NaN	3.0621E-06	1	26946	76.563	61.588	1	100760			5682	3026	4849	4970	5682	5682		
FATVEVTDKPVDEALR	16	Unmodified	_FATVEVTDKPVDEALR_			0	0	1	Q9NRV9	Q9NRV9	Q9NRV9	HEBP1	Heme-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.470166	1788.92578	2.0639	0.0018482	-0.46672	-0.00041793	1.5972	0.0014303	895.469707712153	10.046	0.070926	10.046	10.019	10.09	0	240	25	1.16393748060522	0.0159524375137323	1.16393748060522	469.786244942965	0	6.43869266360139						136	9	3	NaN	NaN	NaN	0.0012232	1	26947	55.604	53.124	1	28304			5683	3026	4849	4970	5683	5683		
FAVALDSEQNNIHVK	15	Unmodified	_FAVALDSEQNNIHVK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.293288	1683.85803	0.23053	0.00012963	-0.76399	-0.00042959	-0.53346	-0.00029996	562.292799764016	9.0617	0.17737	9.0617	8.9553	9.1326	0	687	43	0.863749705078866	0.0284854887682705	0.863749705078866	523.185884382207	0	17.2540789833628						321	21	4	NaN	NaN	NaN	5.1898E-05	1	24017	112.93	105.79	1	104670			5684	69	4850	4971	5684	5684		
FAVALDSEQNNIHVK	15	Unmodified	_FAVALDSEQNNIHVK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.936293	1683.85803	2.0468	0.0017253	-1.3397	-0.0011293	0.70712	0.00059606	843.436373338637	9.0528	0.070948	9.0528	9.0262	9.0972	0	261	28	1.14997238118939	0.0179650057750098	1.14997238118939	464.372377494465	0	7.25448069875785						154	9	4	NaN	NaN	NaN	2.608E-06	1	24018	103.69	99.44	1	34141			5685	69	4850	4971	5685	5685		
FAVALLDDSVR	11	Unmodified	_FAVALLDDSVR_			0	0	0	Q9NRG9	Q9NRG9	Q9NRG9	AAAS	Aladin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.32987	1204.64519	1.0219	0.00061657	-0.41416	-0.00024988	0.60778	0.00036669	603.329616582998	13.921	0.133	13.921	13.859	13.992	0	537	37	0.965173861991602	0.0242575920930522	0.965173861991602	391.01148788654	0	9.82724206525569						302	16	3	NaN	NaN	NaN	5.3793E-05	1	9601	115.86	96.537	1	99349			5686	3020	4851	4972	5686	5686		
FAVFGLGNK	9	Unmodified	_FAVFGLGNK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.766178	951.517802	-0.98678	-0.00047046	-1.7464	-0.00083261	-2.7332	-0.0013031	476.765369290484	12.431	0.23937	12.431	12.369	12.609	0	747	49	0.822982596624503	0.0326545061088502	0.822982596624503	334.409490335816	0	13.2687820979656						631	28	4	NaN	NaN	NaN	0.00062466	1	3278	84.699	62.771	1	273140			5687	728	4852	4973	5687	5687		
FAVLDFCYHLLK	12	Unmodified	_FAVLDFCYHLLK_			0	0	0	Q7L576	Q7L576	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.267245	1524.77991	-2.1526	-0.0010962	-0.38441	-0.00019577	-2.537	-0.001292	509.267639902439	16.014	0.053195	16.014	15.996	16.049	0	765	19	0.810730346695089	0.0122573637071828	0.810730346695089	491.488726626005	0	7.43077658902638						88	7	3	NaN	NaN	NaN	0.0044855	1	19270	25.857	25.567	1	16557			5688	2117	4853	4974	5688	5688		
FAVLHGEAPR	10	Unmodified	_FAVLHGEAPR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	366.201452	1095.58253	-1.2396	-0.00045394	0.99268	0.00036352	-0.24691	-9.0419E-05	366.201876671283	5.2923	0.15078	5.2923	5.2568	5.4076	0	837	34	0.761618911097395	0.0225486205896858	0.761618911097395	463.337002156689	0	13.7176350462989						304	18	4	NaN	NaN	NaN	0.0039077	1	6600	65.156	56.393	1	117470			5689	1280	4854	4975	5689	5689		
FAVLHGEAPR	10	Unmodified	_FAVLHGEAPR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.79854	1095.58253	1.2021	0.00065969	0.72756	0.00039928	1.9296	0.001059	548.79898333134	5.3012	0.14189	5.3012	5.2568	5.3987	0	567	52	0.944945209309785	0.0344244475580081	0.944945209309785	383.247729186801	0	13.9617527292967						451	17	3	NaN	NaN	NaN	2.6184E-05	1	6601	129.72	109.06	1	132350			5690	1280	4854	4975	5690	5690		
FAVLQTYGDTTHTLVEK	17	Unmodified	_FAVLQTYGDTTHTLVEK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.666791	1921.97854	1.1957	0.00076724	-0.15298	-9.8162E-05	1.0427	0.00066908	642.001199155942	11.163	0.16848	11.163	11.119	11.287	0	588	37	0.93076847747433	0.0243147574808095	0.93076847747433	563.210242444156	0	14.7129181822933						480	20	4	NaN	NaN	NaN	3.1786E-07	1	30105	128.41	112.12	1	311140			5691	939	4855	4976	5691	5691		
FAVLQTYGDTTHTLVEK	17	Unmodified	_FAVLQTYGDTTHTLVEK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.996548	1921.97854	1.5133	0.0014558	-0.11726	-0.0001128	1.396	0.001343	962.497521322726	11.172	0.062055	11.172	11.137	11.199	0	153	43	1.22165005014568	0.0278058342330012	1.22165005014568	492.817437636073	0	11.2169601895462						179	8	3	NaN	NaN	NaN	0.066116	1	30106	30.862	26.555	1	34347			5692	939	4855	4976	5692	5692		
FAVQDVNDVLDLEWDQHLEQK	21	Unmodified	_FAVQDVNDVLDLEWDQHLEQK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.746721	2540.21833	0.83496	0.00070783	0.7535	0.00063877	1.5885	0.0013466	848.081939359892	17.468	0.079781	17.468	17.433	17.513	0	405	25	1.05384839605172	0.0160737100321473	1.05384839605172	636.573472878521	0	9.70926886214488						214	10	4	NaN	NaN	NaN	9.4959E-08	1	36987	90.89	85.055	1	51290			5693	978	4856	4977	5693	5693		
FAVSDGLELRPK	12	Unmodified	_FAVSDGLELRPK_			0	0	1	Q9H2D1	Q9H2D1	Q9H2D1	SLC25A32	Mitochondrial folate transporter/carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.58211	1330.7245	-1.6907	-0.00075167	-0.57621	-0.00025617	-2.2669	-0.0010078	444.581637823529	9.6026	0.088672	9.6026	9.5672	9.6558	0	822	28	0.771863999559055	0.0184360231604151	0.771863999559055	468.539323448306	0	11.1910930210411						167	11	3	NaN	NaN	NaN	0.0058347	1	13325	61.48	47.485	1	39902			5694	2865	4857	4978	5694	5694		
FAVSQMSALLDSAHLLASSTQR	22	Unmodified	_FAVSQMSALLDSAHLLASSTQR_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.40212	2332.18453	0.3339	0.00025991	-0.87821	-0.0006836	-0.54431	-0.00042369	778.735858451378	18.399	0.070937	18.399	18.373	18.444	0	546	22	0.959108205975751	0.0141571162745744	0.959108205975751	579.627076136971	0	8.55570608366816						144	9	4	NaN	NaN	NaN	1.3262E-07	1	35916	66.913	64.167	1	29361			5695	108	4858	4979	5695	5695		
FAYGYIEDLK	10	Unmodified	_FAYGYIEDLK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.805697	1217.59684	0.84654	0.00051623	0.88524	0.00053982	1.7318	0.001056	609.806008841624	12.387	0.15959	12.387	12.307	12.467	0	531	91	0.969216233931596	0.0607112257683476	0.969216233931596	392.601822687949	0	24.5923840932642						556	19	4	NaN	NaN	NaN	0.0043715	1	9952	55.235	36.898	1	214890			5696	916	4859	4980	5696	5696		
FCADCIITALR	11	Unmodified	_FCADCIITALR_			0	0	0	Q99496	Q99496	Q99496	RNF2	E3 ubiquitin-protein ligase RING2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.32849	1338.64243	-0.13359	-8.9548E-05	-0.88099	-0.00059055	-1.0146	-0.0006801	670.327726035306	14.879	0.13301	14.879	14.834	14.967	0	546	31	0.959108205975751	0.0202230534711471	0.959108205975751	388.113350715259	0	8.18347397663615						170	16	2	NaN	NaN	NaN	0.00077909	1	13551	50.297	42.114	1	48534			5697	2643	4860	4981	5697	5697		
FCADHPFLFFIQHSK	15	Unmodified	_FCADHPFLFFIQHSK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	474.233079	1892.90321	-1.7075	-0.00080975	-0.21552	-0.00010221	-1.923	-0.00091196	474.483728142029	14.311	0.21279	14.311	14.249	14.462	-1.7764E-15	789	31	0.794378096728713	0.0204516951022167	0.794378096728713	640.974802477751	0	16.5022440604317						576	25	5	NaN	NaN	NaN	7.6913E-05	1	29438	84.309	79.493	1	300720			5698	961	4861	4982	5698	5698		
FCADSDGFSQELR	13	Unmodified	_FCADSDGFSQELR_			0	0	0	P52732	P52732	P52732	KIF11	Kinesin-like protein KIF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.32773	1530.64091	1.7734	0.001359	2.6145	0.0020035	4.3879	0.0033625	766.330377197368	9.6292	0.13301	9.6292	9.5672	9.7002	0	447	31	1.02569221487577	0.020133781351245	1.02569221487577	414.524817988528	0	8.13689714029505						161	16	3	NaN	NaN	NaN	0.0050787	1	19447	65.879	47.372	1	56004			5699	1219	4862	4983	5699	5699		
FCAGGSYVGEDCPQWMVPITISTSEDPNQAK	31	Unmodified	_FCAGGSYVGEDCPQWMVPITISTSEDPNQAK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1148.84422	3443.51083	1.3166	0.0015125	-0.22957	-0.00026374	1.087	0.0012488	1149.51294291338	17.229	0.053194	17.229	17.202	17.255	0	348	22	1.09197348738011	0.0140267359547332	1.09197348738011	658.660417485439	0	8.46069603948774						63	7	3	NaN	NaN	NaN	0.061878	1	38628	10.617	10.607	1	127470			5700	1277	4863	4984	5700	5700		
FCDNSSAIQGK	11	Unmodified	_FCDNSSAIQGK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.777145	1225.53974	3.0828	0.0018922	0.122	7.4881E-05	3.2048	0.001967	613.776512650476	3.8736	0.23053	3.8736	3.8381	4.0686	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.282271313836	0	9.84304314497876						481	27	5	NaN	NaN	NaN	0.00055402	1	10155	58.916	52.652	1	152240			5701	141	4864	4985	5701	5701		
FCELLIHR	8	Unmodified	_FCELLIHR_			0	0	0	Q8IWZ3	Q8IWZ3	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	363.195421	1086.56443	-1.9691	-0.00071515	-0.61889	-0.00022478	-2.588	-0.00093993	363.195306077685	11.58	0.053264	11.58	11.553	11.607	0	906	19	0.714399420407021	0.012337899338106	0.714399420407021	434.655372027506	0	7.50663294741628						56	7	2	NaN	NaN	NaN	0.072516	1	6380	10.828	4.0658	1	10318			5702	2207	4865	4986	5702	5702		
FCELLIHR	8	Unmodified	_FCELLIHR_			0	0	0	Q8IWZ3	Q8IWZ3	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	363.195421	1086.56443	-1.2964	-0.00047084	0.21174	7.6901E-05	-1.0846	-0.00039393	363.195663053622	8.0858	0.053308	8.0858	8.068	8.1213	0	900	13	0.718511479433384	0.00822182318901965	0.718511479433384	437.157229173119	0	5.00232709837502						46	7	2	NaN	NaN	NaN	0.04067	1	6381	26.223	19.461	1	7370.4			5703	2207	4865	4986	5703	5703		
FCENTQAGEGR	11	Unmodified	_FCENTQAGEGR_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.769851	1267.52515	1.8313	0.0011624	-0.44374	-0.00028167	1.3876	0.00088078	634.769399429768	2.6853	0.070969	2.6853	2.6764	2.7474	0	651	22	0.888155670855968	0.0142239758453706	0.888155670855968	359.607628449662	0	5.7591820766616						58	9	2	NaN	NaN	NaN	0.00035771	1	11430	83.438	79.83	1	10306			5704	2441	4866	4987	5704	5704		
FCEQVHAAIK	10	Unmodified	_FCEQVHAAIK_			0	0	0	O95273	O95273	O95273	CCNDBP1	Cyclin-D1-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.537736	1201.59138	-1.3673	-0.00054902	-0.52044	-0.00020898	-1.8877	-0.000758	401.537733243335	4.645	0.044356	4.645	4.6361	4.6805	0	900	13	0.718511479433384	0.00822182318901965	0.718511479433384	436.633753882829	0	4.99633704615758						24	6	2	NaN	NaN	NaN	0.065546	1	9505	7.1505	0	1	3507.1			5705	414	4867	4988	5705	5705		
FCFSNEFSTFTHK	13	Unmodified	_FCFSNEFSTFTHK_			0	0	0	Q9Y3B3	Q9Y3B3	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.245169	1650.71368	0.49085	0.00027058	-0.95121	-0.00052435	-0.46036	-0.00025377	551.244735304398	12.919	0.10642	12.919	12.875	12.981	0	702	43	0.853568545818287	0.0285211140004684	0.853568545818287	517.103635367924	0	17.278485490871						279	13	4	NaN	NaN	NaN	2.0066E-11	1	23064	135.28	133.81	1	59930			5706	3379	4868	4989	5706	5706		
FCFTPHTEEGCLSER	15	Unmodified	_FCFTPHTEEGCLSER_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.934666	1868.78217	0.41839	0.00026105	0.19668	0.00012272	0.61507	0.00038376	623.935192587806	8.5205	0.21284	8.5205	8.4495	8.6623	0	714	70	0.845418525735192	0.0468724117223618	0.845418525735192	511.669038043599	0	28.3683892494645						1404	25	6	NaN	NaN	NaN	2.9577E-17	1	28893	179.98	170.83	1	1003400			5707	1127	4869	4990	5707	5707		
FCFTPHTEEGCLSER	15	Unmodified	_FCFTPHTEEGCLSER_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.39836	1868.78217	2.3256	0.0021754	-0.90875	-0.00085005	1.4168	0.0013253	935.398207844035	8.5293	0.13301	8.5293	8.4672	8.6002	0	294	43	1.12800004657306	0.0279936646882595	1.12800004657306	455.13157249072	0	11.2950355525718						403	16	4	NaN	NaN	NaN	0.060134	1	28894	27.378	26.496	1	111850			5708	1127	4869	4990	5708	5708		
FCGLMVQLLHK	11	Unmodified	_FCGLMVQLLHK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.242154	1344.70463	-1.8769	-0.00084318	-1.4783	-0.00066409	-3.3551	-0.0015073	449.241758427061	13.354	0.15079	13.354	13.3	13.451	0	795	31	0.790287188799094	0.0204573895443732	0.790287188799094	479.671443526023	0	12.4167843191726						343	18	4	NaN	NaN	NaN	0.01057	1	13741	45.489	41.881	1	128010			5709	2450	4870	4991	5709	5709		
FCGLMVQLLHK	11	Unmodified	_FCGLMVQLLHK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.359593	1344.70463	1.1589	0.00078039	-1.303	-0.00087739	-0.14406	-9.7001E-05	673.359714334805	13.345	0.1685	13.345	13.283	13.451	0	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	409.333309193048	0	9.78582682328329						402	20	5	NaN	NaN	NaN	2.196E-07	1	13744	113.7	107.83	1	129440			5710	2450	4870	4991	5710	5710		
FCGLMVQLLHK	11	Oxidation (M)	_FCGLM(Oxidation (M))VQLLHK_	FCGLM(1)VQLLHK	FCGLM(63)VQLLHK	0	1	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.573792	1360.69955	-1.5499	-0.00070454	-1.0379	-0.00047179	-2.5878	-0.0011763	454.573500613321	11.048	0.10642	11.048	11.004	11.11	0	801	22	0.78619514174348	0.0143251567743449	0.78619514174348	477.13075264646	0	8.6937357795984						186	13	4	NaN	NaN	NaN	0.0041569	1	14229	62.88	52.178	1	44848			5711	2450	4870	4992	5711	5711	603	
FCGTSFFTVGDDK	13	Unmodified	_FCGTSFFTVGDDK_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.824292	1479.63403	0.8121	0.00060162	3.9549	0.0029299	4.767	0.0035315	740.825662037984	13.061	0.10641	13.061	13.017	13.123	0	441	25	1.02971785871157	0.0161003532377459	1.02971785871157	416.280298587851	0	6.50883132352874						215	13	4	NaN	NaN	NaN	0.00041912	1	17885	73.655	72.603	1	63712			5712	3059	4871	4993	5712	5712		
FCIWTESAFR	10	Unmodified	_FCIWTESAFR_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.808248	1315.60194	0.88746	0.00058466	-0.18688	-0.00012312	0.70057	0.00046154	658.808263771534	14.622	0.19509	14.622	14.568	14.764	0	543	49	0.961130371139249	0.0323524136219553	0.961130371139249	389.00123298307	0	13.0940912563209						809	23	6	NaN	NaN	NaN	4.4218E-10	1	12821	163.2	132.61	1	563180			5713	988	4872	4994	5713	5713		
FCLDNGAK	8	Unmodified	_FCLDNGAK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.715827	923.417102	0.83929	0.00038835	0.016403	7.5897E-06	0.85569	0.00039594	462.715983174678	4.9553	0.23052	4.9553	4.9199	5.1504	0	690	37	0.86171403876517	0.0244296961484468	0.86171403876517	350.29924587822	0	9.93102555239568						337	27	3	NaN	NaN	NaN	0.0035868	1	2753	53.679	41.127	1	97989			5714	484	4873	4995	5714	5714		
FCLESER	7	Unmodified	_FCLESER_			0	0	0	Q9H074	Q9H074	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.713285	939.412016	0.33889	0.00015952	0.53115	0.00025002	0.87005	0.00040954	470.713514837087	5.6913	0.20399	5.6913	5.6381	5.8421	0	726	31	0.837263974740672	0.0203892128493071	0.837263974740672	340.274975264665	0	8.28644144173632						339	24	3	NaN	NaN	NaN	0.0039634	1	3054	84.064	54.753	1	94085			5715	2838	4874	4996	5715	5715		
FCLFHSFFVTK	11	Unmodified	_FCLFHSFFVTK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.240919	1431.70093	-1.287	-0.00061547	-0.70152	-0.00033549	-1.9885	-0.00095097	478.240685332901	15.535	0.13306	15.535	15.5	15.633	0	834	31	0.763668499782291	0.0204944614564727	0.763668499782291	463.228762995466	0	12.4316035445309						323	16	4	NaN	NaN	NaN	0.000221	1	16443	83.358	74.884	1	128460			5716	2698	4875	4997	5716	5716		
FCLFHSFFVTK	11	Unmodified	_FCLFHSFFVTK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.857741	1431.70093	1.7475	0.0012527	-0.62726	-0.00044966	1.1202	0.00080305	716.857312959115	15.544	0.097545	15.544	15.5	15.597	0	429	28	1.03776581230406	0.0181066471151929	1.03776581230406	419.663948756488	0	7.32217898971953						198	12	3	NaN	NaN	NaN	0.0058276	1	16446	65.404	55.89	1	47526			5717	2698	4875	4997	5717	5717		
FCLICNYLSK	10	Unmodified	_FCLICNYLSK_			0	0	0	P40937	P40937	P40937	RFC5	Replication factor C subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.320134	1316.62571	1.1451	0.000755	1.6397	0.0010811	2.7848	0.0018361	659.320863750732	13.824	0.11526	13.824	13.77	13.886	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	403.710485219609	0	7.34755881878431						237	14	3	NaN	NaN	NaN	0.04101	1	12869	34.953	9.6988	1	79307			5718	1024	4876	4998	5718	5718		
FCNPGFPIGCYITDK	15	Unmodified	_FCNPGFPIGCYITDK_			0	0	0	Q99805	Q99805	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.907833	1787.80111	1.7998	0.0016107	3.1559	0.0028242	4.9557	0.0044349	895.412135796212	14.994	0.14188	14.994	14.923	15.065	-1.7764E-15	297	55	1.12600091227925	0.0359968140029667	1.12600091227925	454.476545352223	0	14.5290358945088						557	17	5	NaN	NaN	NaN	0.00023456	1	26911	67.887	60.33	1	152280			5719	2675	4877	4999	5719	5719		
FCNTVHDIVNR	11	Unmodified	_FCNTVHDIVNR_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.832785	1373.65102	1.3238	0.00091057	1.8283	0.0012576	3.1522	0.0021682	687.834121652431	5.913	0.16854	5.913	5.8332	6.0017	0	492	40	0.995464410099171	0.0262300352853753	0.995464410099171	402.720341640938	0	10.6114981753369						263	20	4	NaN	NaN	NaN	0.0012542	1	14612	66.664	55.962	1	63707			5720	3261	4878	5000	5720	5720		
FCNVDDDELR	10	Unmodified	_FCNVDDDELR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.772059	1281.52957	1.599	0.0010262	1.7843	0.0011451	3.3833	0.0021713	641.773471612419	6.6136	0.15075	6.6136	6.5515	6.7023	0	540	37	0.963152256458504	0.0242609491796308	0.963152256458504	389.927246081551	0	9.82192071658767						369	18	4	NaN	NaN	NaN	0.00077325	1	11800	57.032	48.85	1	125220			5721	2175	4879	5001	5721	5721		
FCPFAER	7	Unmodified	_FCPFAER_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.713088	925.411622	-0.42523	-0.00019718	0.62717	0.00029083	0.20194	9.3641E-05	463.713585857948	7.4294	0.23941	7.4294	7.3674	7.6068	-8.8818E-16	744	58	0.82502364452135	0.0387907136666801	0.82502364452135	335.373469685498	0	15.7684889643603						822	28	4	NaN	NaN	NaN	0.058859	1	2792	51.456	20.398	1	334360			5722	1464	4880	5002	5722	5722		
FCQECNNMLYPK	12	Unmodified	_FCQECNNMLYPK_			0	0	0	P36954	P36954	P36954	POLR2I	DNA-directed RNA polymerase II subunit RPB9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.338729	1602.6629	2.4956	0.0020023	-0.27154	-0.00021786	2.2241	0.0017844	802.338697739461	7.8906	0.088678	7.8906	7.8463	7.935	0	345	22	1.09397730668811	0.0140267359547332	1.09397730668811	441.943542843188	0	5.66650271853223						115	11	3	NaN	NaN	NaN	0.032416	1	21663	48.785	42.039	1	19941			5723	995	4881	5003	5723	5723		
FCQLLWR	7	Unmodified	_FCQLLWR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.765655	1021.51676	-1.6169	-0.00082748	-1.6238	-0.00083099	-3.2407	-0.0016585	511.765038011196	11.926	0.15076	11.926	11.873	12.024	0	726	25	0.837263974740672	0.0163159042618426	0.837263974740672	339.880379023118	0	6.62330625934027						300	18	4	NaN	NaN	NaN	0.005182	1	4772	88.201	76.134	1	105640			5724	1280	4882	5004	5724	5724		
FCTGLTQIETLFK	13	Unmodified	_FCTGLTQIETLFK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.402709	1556.79087	1.2032	0.00093779	2.38	0.001855	3.5832	0.0027928	779.404405324173	18.071	0.30146	18.071	17.929	18.231	0	372	67	1.07593298845566	0.0441539797393529	1.07593298845566	434.763730017437	0	17.8417700103694						1063	35	5	NaN	NaN	NaN	1.4548E-07	1	20266	165.39	156.41	1	727070			5725	668	4883	5005	5725	5725		
FCTLLGGTTADAMCPILEFEADRR	24	Unmodified	_FCTLLGGTTADAMCPILEFEADRR_			0	0	1	P61421	P61421	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	915.432874	2743.27679	1.0722	0.00098155	-0.41887	-0.00038345	0.65335	0.0005981	915.431339261118	18.062	0.1064	18.062	18.027	18.133	0	312	52	1.11600111266355	0.0339993293213128	1.11600111266355	673.845037120226	0	20.5289036620251						277	13	5	NaN	NaN	NaN	0.00086995	1	37738	33.456	33.456	1	72541			5726	1344	4884	5006	5726	5726		
FCTTGIDGAMTIWDFK	16	Unmodified	_FCTTGIDGAMTIWDFK_			0	0	0	Q92747	Q92747	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.926222	1861.83789	0.76735	0.00071511	2.7909	0.0026009	3.5583	0.0033161	932.430901337506	18.053	0.053221	18.053	18.027	18.08	0	282	40	1.13599383354359	0.0259815997142345	1.13599383354359	458.369533452854	0	10.483484494122						174	7	4	NaN	NaN	NaN	0.00019665	1	28730	80.815	77.527	1	29300			5727	2430	4885	5007	5727	5727		
FCYLTDSHTSVVGMR	15	Unmodified	_FCYLTDSHTSVVGMR_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.608002	1771.80218	0.72186	0.00042706	-0.38593	-0.00022832	0.33593	0.00019874	591.608060896747	9.78	0.097549	9.78	9.7445	9.842	0	687	46	0.863749705078866	0.0305222862766339	0.863749705078866	522.974098134417	0	18.4803132720788						251	12	5	NaN	NaN	NaN	2.3642E-06	1	26452	81.799	72.537	1	68897			5728	2516	4886	5008	5728	5728		
FCYLTDSHTSVVGMR	15	Unmodified	_FCYLTDSHTSVVGMR_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.908364	1771.80218	2.8872	0.0025607	0.73583	0.00065261	3.6231	0.0032133	887.411152690566	9.7711	0.062072	9.7711	9.7534	9.8154	0	273	31	1.14198628764525	0.0199707283140815	1.14198628764525	460.960603915122	0	8.06114669140715						123	8	4	NaN	NaN	NaN	0.00048437	1	26453	70.195	66.459	1	20759			5729	2516	4886	5008	5729	5729		
FDADYAEK	8	Unmodified	_FDADYAEK_			0	0	0	P0DMN0;P0DMM9;P50225	P0DMN0	P0DMN0	SULT1A4;SULT1A3;SULT1A1	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.711265	957.407977	0.67849	0.00032548	3.4017	0.0016319	4.0802	0.0019573	479.713039340922	4.4943	0.18618	4.4943	4.4322	4.6184	0	726	31	0.837263974740672	0.0203948812138425	0.837263974740672	340.182732164119	0	8.2864981926835						230	22	3	NaN	NaN	NaN	0.047806	1	3377	26.456	6.9691	1	52719			5730	617	4887	5009	5730	5730		
FDAGELITQR	10	Unmodified	_FDAGELITQR_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.29857	1148.58259	1.138	0.00065467	-0.093527	-5.3806E-05	1.0444	0.00060086	575.298982158952	10.702	0.25715	10.702	10.64	10.897	0	609	55	0.916577990479294	0.0365126010715049	0.916577990479294	371.529509545758	0	14.8001685718446						868	30	4	NaN	NaN	NaN	7.1771E-20	1	8030	211.85	175.28	1	568720			5731	960	4888	5010	5731	5731		
FDAMPFTLR	9	Unmodified	_FDAMPFTLR_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.276052	1096.53755	0.019949	1.0958E-05	-0.61166	-0.00033597	-0.59171	-0.00032501	549.275518853025	14.311	0.2128	14.311	14.24	14.453	0	678	40	0.869855008346864	0.0264526463218361	0.869855008346864	352.789085094269	0	10.7284602659682						620	25	4	NaN	NaN	NaN	0.015073	1	6617	54.436	46.254	1	269970			5732	3319	4889	5011	5732	5732		
FDASFFGVHPK	11	Unmodified	_FDASFFGVHPK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.876746	1250.60841	-1.5524	-0.00064873	-0.45725	-0.00019107	-2.0097	-0.0008398	417.876707166286	11.483	0.23063	11.483	11.429	11.66	0	810	43	0.78005493425781	0.028664285342631	0.78005493425781	473.822562655575	0	17.411318794693						760	27	5	NaN	NaN	NaN	0.047493	1	10927	30.593	13.197	1	592010			5733	1127	4890	5012	5733	5733		
FDASFFGVHPK	11	Unmodified	_FDASFFGVHPK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.31148	1250.60841	1.2973	0.00081253	0.56491	0.00035381	1.8622	0.0011663	626.311720644016	11.5	0.22178	11.5	11.42	11.642	0	510	52	0.983355730988811	0.0343292904819641	0.983355730988811	398.211460485786	0	13.9017005438282						717	26	4	NaN	NaN	NaN	1.9421E-07	1	10929	146.27	114.32	1	410910			5734	1127	4890	5012	5734	5734		
FDDAVVQSDMK	11	Unmodified	_FDDAVVQSDMK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.787178	1253.5598	1.6299	0.0010233	2.2046	0.001384	3.8345	0.0024073	627.7884663182	7.4826	0.26597	7.4826	7.3496	7.6156	0	558	52	0.951016745717027	0.0344006212312528	0.951016745717027	385.105829014938	0	13.9302276406312						722	31	5	NaN	NaN	NaN	5.6093E-06	1	11014	147.78	130.38	1	416320			5735	640	4891	5013	5735	5735		
FDDAVVQSDMK	11	Oxidation (M)	_FDDAVVQSDM(Oxidation (M))K_	FDDAVVQSDM(1)K	FDDAVVQSDM(100)K	0	1	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.784635	1269.55472	1.372	0.00087228	0.57425	0.0003651	1.9462	0.0012374	635.784577775049	5.2835	0.12418	5.2835	5.2479	5.3721	0	567	31	0.944945209309785	0.0202398580816178	0.944945209309785	382.594694074717	0	8.19482678419888						255	15	4	NaN	NaN	NaN	0.0011679	1	11487	104.39	93.039	1	86488			5736	640	4891	5014	5736	5736	188	
FDDGAGGDNEVQR	13	Unmodified	_FDDGAGGDNEVQR_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.294744	1378.57494	2.995	0.0020674	-1.6536	-0.0011415	1.3414	0.00092594	690.293632072948	3.7938	0.17732	3.7938	3.7583	3.9356	0	561	52	0.948993180460448	0.0343910976262953	0.948993180460448	383.906512047544	0	13.9126040176512						594	21	4	NaN	NaN	NaN	2.1195E-11	1	14751	188.6	167.51	1	179960			5737	981	4892	5015	5737	5737		
FDDPGLMLMGFK	12	Unmodified	_FDDPGLMLMGFK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.827792	1369.64103	0.53772	0.00036878	-0.23065	-0.00015819	0.30707	0.0002106	685.827971100547	17.663	0.14188	17.663	17.61	17.752	0	504	40	0.987393073566096	0.0262409175570258	0.987393073566096	399.466701103702	0	10.6162105559247						341	17	3	NaN	NaN	NaN	0.0037417	1	14467	53.517	47.651	1	121410			5738	673	4893	5016	5738	5738		
FDDPLLGPR	9	Unmodified	_FDDPLLGPR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.271824	1028.5291	0.15169	7.8162E-05	-0.88257	-0.00045477	-0.73088	-0.0003766	515.271361390927	11.216	0.19509	11.216	11.101	11.296	0	711	67	0.847456455381371	0.0448064593594814	0.847456455381371	343.986746635722	0	18.1871624028136						886	23	4	NaN	NaN	NaN	1.6029E-18	1	4953	200.66	165.02	1	370510			5739	3161	4894	5017	5739	5739		
FDDTNPEK	8	Unmodified	_FDDTNPEK_			0	0	0	P47897;P07814	P47897;P07814	P07814	QARS;EPRS	Glutamine--tRNA ligase;Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.214172	964.413791	0.40719	0.00019676	2.0717	0.0010011	2.4788	0.0011978	483.214908764809	2.8006	0.3015	2.8006	2.7296	3.0311	0	762	28	0.812773098473386	0.018384767783428	0.812773098473386	330.198066648958	0	7.46901538606562						330	35	3	NaN	NaN	NaN	0.0033963	1	3517	60.589	47.762	1	103090			5740	565;1101	4895	5018	5740	5740		
FDDVWPMDPHPR	12	Unmodified	_FDDVWPMDPHPR_			0	0	0	O00165	O00165	O00165	HAX1	HCLS1-associated protein X-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.562721	1510.66633	-1.62	-0.00081741	1.2858	0.00064875	-0.33427	-0.00016866	504.563239197314	11.208	0.133	11.208	11.163	11.296	0	774	25	0.804600385996946	0.0163477001153799	0.804600385996946	487.813498471557	0	9.91129127457015						266	16	4	NaN	NaN	NaN	0.0036569	1	18820	67.881	45.837	1	74114			5741	56	4896	5019	5741	5741		
FDEFDEAIDEAIEDDIK	17	Unmodified	_FDEFDEAIDEAIEDDIK_			0	0	0	Q96T23	Q96T23	Q96T23	RSF1	Remodeling and spacing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.44421	2012.87386	0.75744	0.00076308	6.4057	0.0064534	7.1631	0.0072164	1007.95195546578	19.011	0.053164	19.011	18.984	19.038	0	216	19	1.17988115188462	0.0119511838070987	1.17988115188462	475.813616054417	0	4.81958371341335						61	7	2	NaN	NaN	NaN	0.066447	1	31844	28.277	28.089	1	15798			5742	2627	4897	5020	5742	5742		
FDEHDGPVR	9	Unmodified	_FDEHDGPVR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	357.833317	1070.47812	-0.38177	-0.00013661	1.2072	0.00043198	0.82544	0.00029537	357.83365453	3.1464	0.12416	3.1464	3.1198	3.2439	0	867	25	0.741107305531458	0.0164207262913015	0.741107305531458	450.989664550698	0	9.99258513108606						141	15	2	NaN	NaN	NaN	0.044543	1	5958	30.562	16.026	1	35680			5743	1241	4898	5021	5743	5743		
FDEISFVNFAR	11	Unmodified	_FDEISFVNFAR_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.832777	1343.651	1.02	0.00068632	2.7253	0.0018337	3.7453	0.00252	672.83213459739	15.766	0.26602	15.766	15.642	15.908	-3.5527E-15	522	46	0.975277694896658	0.030307312656189	0.975277694896658	394.641459244038	0	12.2637092542869						803	31	4	NaN	NaN	NaN	5.3793E-05	1	13707	115.86	108.71	1	377030			5744	1579	4899	5022	5744	5744		
FDENYAFLHR	10	Unmodified	_FDENYAFLHR_			0	0	0	Q9UH17	Q9UH17	Q9UH17	APOBEC3B	DNA dC->dU-editing enzyme APOBEC-3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.875405	1310.60439	-2.5141	-0.0011009	-0.29476	-0.00012907	-2.8089	-0.0012299	437.875084211002	9.1681	0.097617	9.1681	9.1326	9.2303	0	834	25	0.763668499782291	0.016395568449004	0.763668499782291	463.637488686333	0	9.95405753078495						182	12	3	NaN	NaN	NaN	0.0028194	1	12664	69.716	65.176	1	53399			5745	3208	4900	5023	5745	5745		
FDEVLVNHFCEEFGK	15	Unmodified	_FDEVLVNHFCEEFGK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.427444	1868.84033	1.6729	0.0015648	1.1927	0.0011157	2.8656	0.0026805	935.929987160718	13.948	0.12414	13.948	13.912	14.036	0	198	37	1.1918274123006	0.0238859627305146	1.1918274123006	480.884866212303	0	9.63763534339523						290	15	4	NaN	NaN	NaN	0.0037821	1	28900	46.068	42.983	1	56306			5746	955	4901	5024	5746	5746		
FDFLCQYHK	9	Unmodified	_FDFLCQYHK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.862219	1256.56483	-0.82978	-0.00034839	-1.2708	-0.00053357	-2.1006	-0.00088196	419.861900708791	9.78	0.1596	9.78	9.7356	9.8952	0	846	34	0.755468431110051	0.0225580498497536	0.755468431110051	458.864466570909	0	13.7015487145873						351	19	4	NaN	NaN	NaN	0.0064914	1	11102	56.091	46.003	1	146620			5747	3044	4902	5025	5747	5747		
FDFLCQYHK	9	Unmodified	_FDFLCQYHK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.289691	1256.56483	1.9008	0.0011961	1.7349	0.0010918	3.6357	0.0022879	629.290413284798	9.7711	0.14186	9.7711	9.709	9.8509	0	537	28	0.965173861991602	0.0181919339867516	0.965173861991602	390.828447070439	0	7.36647104655214						241	17	3	NaN	NaN	NaN	0.00034157	1	11104	75.243	61.97	1	75030			5748	3044	4902	5025	5748	5748		
FDFPVSYLPGPVK	13	Unmodified	_FDFPVSYLPGPVK_			0	0	0	Q9NXE4	Q9NXE4	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.389928	1464.7653	-0.095158	-6.9788E-05	-6.7677	-0.0049634	-6.8629	-0.0050332	733.885593259293	16.723	0.12415	16.723	16.635	16.759	0	471	40	1.00957851518677	0.0261793407485973	1.00957851518677	408.177064374623	0	10.5844233938046						242	15	3	NaN	NaN	NaN	0.064927	1	17419	43.306	30.032	1	62627			5749	3101	4903	5026	5749	5749		
FDGAEGSWFQK	11	Unmodified	_FDGAEGSWFQK_			0	0	0	Q92888	Q92888	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.288202	1270.56185	1.1145	0.00070914	0.96474	0.00061385	2.0792	0.001323	636.288542899741	10.489	0.088696	10.489	10.445	10.534	0	585	31	0.932794566565362	0.0202566836468107	0.932794566565362	377.671850908653	0	8.20156922046777						161	11	3	NaN	NaN	NaN	0.071529	1	11515	30.918	29.661	1	31505			5750	2439	4904	5027	5750	5750		
FDGALNVDLTEFQTNLVPYPR	21	Unmodified	_FDGALNVDLTEFQTNLVPYPR_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1205.10789	2408.20123	0.090131	0.00010862	0.35036	0.00042223	0.4405	0.00053084	1205.60979015195	19.153	0.1862	19.153	19.073	19.259	0	66	61	1.27913350869533	0.0395867663585701	1.27913350869533	515.25895547555	0	15.946291568404						779	22	6	NaN	NaN	NaN	2.2532E-11	1	36391	123.92	122.19	1	239130			5751	1447;2696;1448	4905	5028	5751	5751		
FDGALNVDLTEFQTNLVPYPR	21	Unmodified	_FDGALNVDLTEFQTNLVPYPR_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.741018	2408.20123	0.20863	0.00016768	0.72355	0.00058154	0.93218	0.00074923	804.075472800185	19.153	0.088654	19.153	19.117	19.206	0	495	142	0.993446994398923	0.0949106091962277	0.993446994398923	600.267166407645	0	57.3475210710294						903	11	5	NaN	NaN	NaN	1.1894E-05	1	36392	71.912	67.54	1	205560			5752	1447;2696;1448	4905	5028	5752	5752		
FDGCYCDSLENLADGYK	17	Unmodified	_FDGCYCDSLENLADGYK_			0	0	0	P06280	P06280	P06280	GLA	Alpha-galactosidase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.9115	2025.80844	1.9644	0.0019917	0.86418	0.0008762	2.8286	0.0028679	1014.41417125027	13.815	0.070932	13.815	13.788	13.859	0	210	37	1.18386433251387	0.0238990877205962	1.18386433251387	477.399061874623	0	9.63742360008831						267	9	5	NaN	NaN	NaN	0.002733	1	32069	44.571	44.004	1	56844			5753	538	4906	5029	5753	5753		
FDGILGMAYPR	11	Unmodified	_FDGILGMAYPR_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.313166	1238.61178	1.2172	0.00075505	-0.27252	-0.00016905	0.94468	0.000586	620.313242230089	14.613	0.21281	14.613	14.551	14.764	0	528	49	0.971237000454584	0.0323300376824983	0.971237000454584	393.34555925727	0	13.0934846459503						646	25	5	NaN	NaN	NaN	0.0007327	1	10574	76.605	65.244	1	288400			5754	557	4907	5030	5754	5754		
FDGILTEGEGPR	12	Unmodified	_FDGILTEGEGPR_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.819867	1289.62518	1.0798	0.00069733	1.6285	0.0010517	2.7083	0.0017491	645.821110355032	9.5406	0.16846	9.5406	9.4785	9.647	0	564	52	0.946969335010767	0.034395858934352	0.946969335010767	383.350011771058	0	13.924054813464						395	20	3	NaN	NaN	NaN	0.0023598	1	12052	64.906	45.582	1	121570			5755	2549	4908	5031	5755	5755		
FDHIFYTGNTAVGK	14	Unmodified	_FDHIFYTGNTAVGK_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.928057	1568.76234	-1.3905	-0.00072854	-0.86095	-0.00045107	-2.2515	-0.0011796	524.261292016877	8.8753	0.079918	8.8753	8.831	8.9109	0	774	22	0.804600385996946	0.0143072230251827	0.804600385996946	487.649669461073	0	8.67127669904283						134	10	3	NaN	NaN	NaN	0.018168	1	20623	40.533	37.862	1	30500			5756	1194	4909	5032	5756	5756		
FDHIFYTGNTAVGK	14	Unmodified	_FDHIFYTGNTAVGK_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.928057	1568.76234	0.013655	7.1542E-06	7.0183	0.0036771	7.0319	0.0036842	523.931666507362	10.214	0.15963	10.214	10.161	10.321	0	696	40	0.857641857947968	0.0264746954397943	0.857641857947968	519.796841974901	0	16.0456989760022						431	19	4	NaN	NaN	NaN	0.045515	1	20626	35.33	23.372	1	166110			5757	1194	4909	5032	5757	5757		
FDILCVVR	8	Unmodified	_FDILCVVR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.278595	1020.54264	-0.38156	-0.00019509	-1.5381	-0.00078641	-1.9197	-0.0009815	511.278146977308	14.994	0.23054	14.994	14.923	15.154	0	702	49	0.853568545818287	0.0325910336061924	0.853568545818287	346.50348103473	0	13.2302281408922						760	27	5	NaN	NaN	NaN	0.00029375	1	4752	109.11	62.272	1	498610			5758	1144	4910	5033	5758	5758		
FDLCLTEQQMK	11	Unmodified	_FDLCLTEQQMK_			0	0	0	P49406	P49406	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.831062	1411.64757	0.83164	0.00058783	4.0548	0.0028661	4.8865	0.0034539	706.834367604094	12.05	0.11529	12.05	12.006	12.121	0	456	25	1.01965166402748	0.0161092490285764	1.01965166402748	412.394762400798	0	6.51533279449052						196	14	3	NaN	NaN	NaN	0.0015755	1	15803	69.915	56.117	1	58128			5759	1130	4911	5034	5759	5759		
FDLGQDVIDFTGHALALYR	19	Unmodified	_FDLGQDVIDFTGHALALYR_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.700494	2150.07965	0.27144	0.00019481	-2.2608	-0.0016226	-1.9893	-0.0014277	718.032981453107	19.986	0.026622	19.986	19.986	20.013	0	582	73	0.934820374997243	0.0486093347754677	0.934820374997243	565.232115338524	0	29.3912690129556						205	4	4	NaN	NaN	NaN	8.7155E-08	1	34020	57.62	50.764	1	81563			5760	1161;920	4912	5035	5760	5760		
FDLGQDVIDFTGHALALYR	19	Unmodified	_FDLGQDVIDFTGHALALYR_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.700494	2150.07965	0.42828	0.00030737	-1.3648	-0.00097953	-0.93655	-0.00067216	718.033860833219	19.986	0.026622	19.986	19.986	20.013	0	471	22	1.00957851518677	0.014108255116009	1.00957851518677	610.434059546219	0	8.53045039492133						49	4	4	NaN	NaN	NaN	0.0012455	1	34021	38.839	38.475	1	11165			5761	1161;920	4912	5035	5761	5761		
FDLLWLIQDRPDR	13	Unmodified	_FDLLWLIQDRPDR_			0	0	1	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.970256	1685.88894	-1.1038	-0.00062143	0.22272	0.00012539	-0.88112	-0.00049604	563.304748633272	18.798	0.062083	18.798	18.772	18.834	0	690	31	0.86171403876517	0.0203609064422459	0.86171403876517	521.947720754663	0	12.3327788940958						164	8	3	NaN	NaN	NaN	4.0977E-05	1	24083	85.821	82.316	1	41238			5762	952	4913	5036	5762	5762		
FDLMYAK	7	Unmodified	_FDLMYAK_			0	0	0	P68363;A6NHL2;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBAL3;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.220214	886.425876	-0.85933	-0.00038173	-1.0277	-0.00045654	-1.8871	-0.00083827	444.22006175178	9.913	0.37241	9.913	9.8332	10.206	0	762	58	0.812773098473386	0.0388123006858411	0.812773098473386	330.606083001486	0	15.7874106883251						1032	43	5	NaN	NaN	NaN	0.006951	1	2091	80.294	44.661	1	954930			5763	1447;2696;1448	4914	5037	5763	5763		
FDLMYAK	7	Oxidation (M)	_FDLM(Oxidation (M))YAK_	FDLM(1)YAK	FDLM(69)YAK	0	1	0	P68363;A6NHL2;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBAL3;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha chain-like 3;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.217672	902.42079	0.10828	4.8968E-05	-1.2751	-0.00057662	-1.1668	-0.00052765	452.217254378866	7.8108	0.28382	7.8108	7.7309	8.0148	0	747	46	0.822982596624503	0.0306242425973777	0.822982596624503	334.66843684252	0	12.453443659182						728	33	4	NaN	NaN	NaN	0.047749	1	2364	69.093	48.435	1	460640			5764	1447;2696;1448	4914	5038	5764	5764	521	
FDLNEPLHLSFLQNAAK	17	Unmodified	_FDLNEPLHLSFLQNAAK_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.01078	1956.01051	-1.2069	-0.0007881	-1.2357	-0.0008069	-2.4425	-0.001595	653.009648515883	16.697	0.079827	16.697	16.652	16.732	0	669	28	0.875957769340875	0.0183057433537801	0.875957769340875	529.978114051191	0	11.0754692503517						164	10	3	NaN	NaN	NaN	0.0015201	1	30823	39.82	32.614	1	36265			5765	3	4915	5039	5765	5765		
FDLNSPWEAFPVYR	14	Unmodified	_FDLNSPWEAFPVYR_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.922655	1739.83076	1.3204	0.00115	0.38819	0.00033809	1.7086	0.0014881	871.425053403546	18.47	0.071016	18.47	18.444	18.515	0	369	40	1.07793901817685	0.0260712032771278	1.07793901817685	435.170124338858	0	10.5250933313093						223	9	3	NaN	NaN	NaN	2.6932E-08	1	25587	133.49	126.74	1	54415			5766	338	4916	5040	5766	5766		
FDLSQNHPLGMAIFLK	16	Unmodified	_FDLSQNHPLGMAIFLK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.990552	1829.94983	-1.6622	-0.0010156	-0.4148	-0.00025344	-2.077	-0.001269	611.324730549152	16.369	0.14187	16.369	16.324	16.466	0	723	31	0.839303037468863	0.0203920467361437	0.839303037468863	508.047124422921	0	12.3437188272775						338	17	5	NaN	NaN	NaN	0.00010316	1	27981	88.734	76.152	1	135150			5767	1127	4917	5041	5767	5767		
FDLSQNHPLGMAIFLK	16	Unmodified	_FDLSQNHPLGMAIFLK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.990552	1829.94983	0.072774	4.4464E-05	-1.1228	-0.00068605	-1.0501	-0.00064158	611.324114471746	16.369	0.16846	16.369	16.298	16.466	0	543	100	0.961130371139249	0.0668147376210596	0.961130371139249	581.791679591205	0	40.4443138925324						1071	20	4	NaN	NaN	NaN	8.8272E-05	1	27983	68.548	52.932	1	357730			5768	1127	4917	5041	5768	5768		
FDLSQNHPLGMAIFLK	16	Unmodified	_FDLSQNHPLGMAIFLK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.982189	1829.94983	1.1423	0.0010463	0.14127	0.0001294	1.2836	0.0011757	915.981589671813	16.369	0.16848	16.369	16.289	16.457	0	234	88	1.16792504164217	0.0578236653922581	1.16792504164217	471.314400552323	0	23.3346535268828						790	20	3	NaN	NaN	NaN	0.049249	1	27985	44.045	36.469	1	237770			5769	1127	4917	5041	5769	5769		
FDMELDDLPK	10	Unmodified	_FDMELDDLPK_			0	0	0	P28482	P28482	P28482	MAPK1	Mitogen-activated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.786647	1221.55874	0.64773	0.00039627	0.52414	0.00032066	1.1719	0.00071693	611.786977928534	13.708	0.097544	13.708	13.673	13.77	0	531	40	0.969216233931596	0.0262736050362692	0.969216233931596	392.58755226339	0	10.6423003755135						278	12	4	NaN	NaN	NaN	0.0010791	1	10054	55.235	48.084	1	75814			5770	879	4918	5042	5770	5770		
FDMIFIVK	8	Unmodified	_FDMIFIVK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.780439	1011.54633	-1.3006	-0.00065913	-1.5755	-0.00079843	-2.8761	-0.0014576	506.779758207255	16.209	0.14187	16.209	16.156	16.298	0	717	43	0.84338031290707	0.028536968892656	0.84338031290707	342.408112782644	0	11.5858640681218						311	17	3	NaN	NaN	NaN	0.010865	1	4550	70.67	54.122	1	72984			5771	951	4919	5043	5771	5771		
FDMIVPILEK	10	Unmodified	_FDMIVPILEK_			0	0	0	Q13418	Q13418	Q13418	ILK	Integrin-linked protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.835942	1203.65733	-0.67149	-0.0004048	-3.3775	-0.0020361	-4.0489	-0.0024409	603.334971714313	17.051	0.2483	17.051	16.901	17.149	0	597	61	0.924688525662974	0.0405583153888894	0.924688525662974	374.613552402859	0	16.4311486361464						692	29	4	NaN	NaN	NaN	0.05389	1	9582	39.039	17.951	1	185850			5772	1663	4920	5044	5772	5772		
FDNLYCCR	8	Unmodified	_FDNLYCCR_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.236601	1146.45865	0.83133	0.00047738	0.75942	0.00043609	1.5907	0.00091347	574.237118233188	6.4717	0.20394	6.4717	6.4274	6.6313	0	633	31	0.900343422309015	0.0203072864196308	0.900343422309015	364.956939633121	0	8.23162020216097						375	24	4	NaN	NaN	NaN	5.0693E-05	1	7959	125.5	108.11	1	116420			5773	242	4921	5045	5773	5773		
FDNSYSLWR	9	Unmodified	_FDNSYSLWR_			0	0	0	Q9H3P7	Q9H3P7	Q9H3P7	ACBD3	Golgi resident protein GCP60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.277638	1186.54072	0.19369	0.00011511	0.70032	0.00041619	0.89401	0.00053129	594.277899560628	11.536	0.12419	11.536	11.474	11.598	0	615	25	0.912521036363781	0.0162300673431094	0.912521036363781	369.744632911142	0	6.57626515199456						166	15	2	NaN	NaN	NaN	0.001557	1	9046	67.507	50.112	1	44386			5774	2882	4922	5046	5774	5774		
FDPETNSDDACTYHPGVPVFHDALK	25	Unmodified	_FDPETNSDDACTYHPGVPVFHDALK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	944.757179	2831.24971	2.1539	0.0020349	0.457	0.00043175	2.6109	0.0024667	945.092071685547	11.119	0.062054	11.119	11.083	11.146	0	417	49	1.04580932352505	0.0321562992894993	1.04580932352505	631.364045497407	0	19.4130332852759						308	8	4	NaN	NaN	NaN	0.022816	1	37955	15.78	15.181	1	57782			5775	3213	4923	5047	5775	5775		
FDPETNSDDACTYHPGVPVFHDALK	25	Unmodified	_FDPETNSDDACTYHPGVPVFHDALK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	708.819704	2831.24971	1.9673	0.0013945	0.74791	0.00053013	2.7152	0.0019246	709.071096923525	11.119	0.15962	11.119	11.057	11.216	0	525	67	0.973257487423603	0.0444538139384744	0.973257487423603	783.417144466713	0	35.7828020090808						1060	19	7	NaN	NaN	NaN	2.5565E-13	1	37956	130.7	129.86	1	627640			5776	3213	4923	5047	5776	5776		
FDPYEHEALFHTPVEGK	17	Unmodified	_FDPYEHEALFHTPVEGK_			0	0	0	Q9HAV7	Q9HAV7	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.47852	2014.94249	1.7191	0.0017337	-0.8721	-0.00087949	0.84703	0.00085421	1008.9795115	10.064	0.053195	10.064	10.037	10.09	0	180	25	1.203763835057	0.0159064952791819	1.203763835057	485.441455882525	0	6.4146072522181						75	7	3	NaN	NaN	NaN	0.038396	1	31886	20.966	19.256	1	10275			5777	2948	4924	5048	5777	5777		
FDPYEHEALFHTPVEGK	17	Unmodified	_FDPYEHEALFHTPVEGK_			0	0	0	Q9HAV7	Q9HAV7	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	504.742899	2014.94249	0.059077	2.9819E-05	0.95747	0.00048328	1.0165	0.0005131	504.99373329993	10.064	0.17734	10.064	10.002	10.179	0	708	34	0.849494101904619	0.0224141150004975	0.849494101904619	685.145737163421	0	18.0777421649547						519	21	5	NaN	NaN	NaN	0.0013119	1	31887	117.21	113.36	1	222140			5778	2948	4924	5048	5778	5778		
FDPYEHEALFHTPVEGK	17	Unmodified	_FDPYEHEALFHTPVEGK_			0	0	0	Q9HAV7	Q9HAV7	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.654774	2014.94249	0.82842	0.00055724	2.1534	0.0014485	2.9818	0.0020057	672.990356395885	10.064	0.097541	10.064	10.019	10.117	0	618	31	0.910492137470517	0.0202875850561227	0.910492137470517	550.758914214691	0	12.2720096722528						286	12	4	NaN	NaN	NaN	2.9445E-07	1	31889	130.65	113.89	1	86733			5779	2948	4924	5048	5779	5779		
FDQLFDDESDPFEVLK	16	Unmodified	_FDQLFDDESDPFEVLK_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.449096	1942.88364	2.1554	0.002096	-0.16431	-0.00015978	1.9911	0.0019362	972.950399939105	18.515	0.28381	18.515	18.444	18.727	0	231	121	1.16991841121525	0.0797294553198915	1.16991841121525	471.912331735943	0	32.1606300126206						1952	33	6	NaN	NaN	NaN	2.3324E-24	1	30571	220.06	160.06	1	1501700			5780	2296	4925	5049	5780	5780		
FDQLLAEEK	9	Unmodified	_FDQLLAEEK_			0	0	0	P35579;P35580;P35749;Q7Z406	P35579	P35579	MYH9;MYH10;MYH11;MYH14	Myosin-9;Myosin-10;Myosin-11;Myosin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.782222	1091.54989	1.6117	0.00088124	0.6355	0.00034748	2.2472	0.0012287	546.783423736646	7.7309	0.16858	7.7309	7.6422	7.8108	-8.8818E-16	633	34	0.900343422309015	0.0223271759310266	0.900343422309015	365.175041191192	0	9.05579714170148						229	20	2	NaN	NaN	NaN	0.00044858	1	6496	90.263	49.76	1	71318			5781	972	4926	5050	5781	5781		
FDQPLEASTWLK	12	Unmodified	_FDQPLEASTWLK_			0	0	0	P51398	P51398	P51398	DAP3	28S ribosomal protein S29, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.866817	1433.71908	1.6904	0.0012135	0.69759	0.00050078	2.3879	0.0017142	717.866616463837	14.267	0.12414	14.267	14.214	14.338	0	432	46	1.035754240522	0.0301819168183546	1.035754240522	418.844838665393	0	12.2051540663015						263	15	3	NaN	NaN	NaN	0.006807	1	16500	34.193	20.919	1	73541			5782	1183	4927	5051	5782	5782		
FDSASSSYYLDMHSLPHVINPVESR	25	Unmodified	_FDSASSSYYLDMHSLPHVINPVESR_			0	0	0	Q96S52	Q96S52	Q96S52	PIGS	GPI transamidase component PIG-S	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	713.58935	2850.32829	1.2314	0.00087873	3.5854	0.0025585	4.8169	0.0034373	713.842659184815	14.391	0.12413	14.391	14.32	14.444	0	528	88	0.971237000454584	0.0586185072708816	0.971237000454584	781.76519351864	0	47.1830342737622						860	15	5	NaN	NaN	NaN	0.00064164	1	37999	46.353	40.306	1	203980			5783	2616	4928	5052	5783	5783		
FDSDAASQR	9	Unmodified	_FDSDAASQR_			0	0	0	P04439	P04439	P04439	HLA-A	HLA class I histocompatibility antigen, A-3 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.722695	995.430838	0.457	0.00022792	1.0168	0.00050711	1.4738	0.00073502	498.723312820606	2.4281	0.26606	2.4281	2.4015	2.6676	0	750	25	0.820941264895493	0.0163340619501384	0.820941264895493	333.370369658285	0	6.63298643056055						299	31	2	NaN	NaN	NaN	0.0001157	1	4168	125.5	113.85	1	54977			5784	514	4929	5053	5784	5784		
FDSLTDLVEHYK	12	Unmodified	_FDSLTDLVEHYK_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.576913	1465.70891	-1.4463	-0.00070809	-0.76619	-0.00037511	-2.2125	-0.0010832	489.576573456778	14.107	0.10639	14.107	14.072	14.178	0	762	25	0.812773098473386	0.0163408788985463	0.812773098473386	492.905481595312	0	9.90991064825749						183	13	3	NaN	NaN	NaN	0.012528	1	17444	40.533	32.976	1	50367			5785	1556	4930	5054	5785	5785		
FDSLTDLVEHYK	12	Unmodified	_FDSLTDLVEHYK_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.861731	1465.70891	1.22	0.00089534	2.2177	0.0016275	3.4377	0.0025228	733.863092241889	14.107	0.13301	14.107	14.054	14.187	0	378	34	1.07192009927972	0.0220754584082121	1.07192009927972	433.379395603069	0	8.92515107146534						350	16	4	NaN	NaN	NaN	2.4953E-05	1	17446	108.4	89.894	1	138240			5786	1556	4930	5054	5786	5786		
FDSNNVVLIEDNGNPVGTR	19	Unmodified	_FDSNNVVLIEDNGNPVGTR_			0	0	0	Q6P1L8	Q6P1L8	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.5058	2058.99705	1.2895	0.0013289	-4.0942	-0.0042191	-2.8047	-0.0028903	1031.00290524528	12.024	0.12414	12.024	11.97	12.094	0	207	40	1.18585551256002	0.0258817910416804	1.18585551256002	478.14956329116	0	10.4358135984515						239	15	3	NaN	NaN	NaN	0.041047	1	32684	20.734	16.427	1	42279			5787	2058	4931	5055	5787	5787		
FDSPESHVGVAWR	13	Unmodified	_FDSPESHVGVAWR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.240635	1485.70008	-1.1864	-0.00058874	-0.050746	-2.5182E-05	-1.2371	-0.00061392	496.240661219756	8.68	0.22188	8.68	8.5559	8.7778	0	810	49	0.78005493425781	0.0327409443720901	0.78005493425781	473.004127427336	0	19.8532194897302						585	26	4	NaN	NaN	NaN	0.00023914	1	18085	92.428	70.384	1	161390			5788	970	4932	5056	5788	5788		
FDSSLDRK	8	Unmodified	_FDSSLDRK_			0	0	1	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.245806	966.47706	0.5128	0.00024832	0.26751	0.00012954	0.78031	0.00037786	484.245953769726	2.836	0.24827	2.836	2.8183	3.0666	0	729	31	0.835224628594324	0.0203920467361437	0.835224628594324	339.309075906534	0	8.28424629375303						201	29	2	NaN	NaN	NaN	0.041402	1	3565	70.67	35.036	1	48776			5789	1530	4933	5057	5789	5789		
FDSSYDRDSTFNVFVGK	17	Unmodified	_FDSSYDRDSTFNVFVGK_			0	0	1	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.974283	1982.90102	-0.5039	-0.00033357	0.24972	0.00016531	-0.25418	-0.00016826	662.308714706478	12.334	0.097554	12.334	12.29	12.387	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	527.466369992522	0	12.3074648532631						223	12	4	NaN	NaN	NaN	0.024741	1	31328	30.875	30.136	1	50851			5790	420	4934	5058	5790	5790		
FDTGNLCMVTGGANLGR	17	Unmodified	_FDTGNLCMVTGGANLGR_			0	0	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.946906	1781.81889	1.2497	0.0007435	-0.88673	-0.00052756	0.36296	0.00021594	594.946049768214	12.937	0.10641	12.937	12.893	12.999	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	553.707775450499	0	14.7375316773695						115	13	2	NaN	NaN	NaN	0.00050965	1	26716	97.594	85.576	1	51659			5791	1394	4935	5059	5791	5791		
FDTGNLCMVTGGANLGR	17	Unmodified	_FDTGNLCMVTGGANLGR_			0	0	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.91672	1781.81889	3.6619	0.0032661	-0.50171	-0.00044748	3.1602	0.0028186	891.916689180023	12.937	0.31036	12.937	12.813	13.123	0	327	61	1.10599442759226	0.040046054292028	1.10599442759226	446.413074405953	0	16.1638085765496						1324	36	7	NaN	NaN	NaN	8.9587E-35	1	26717	263.12	249.95	1	1473300			5792	1394	4935	5059	5792	5792		
FDTGNLCMVTGGANLGR	17	Oxidation (M)	_FDTGNLCM(Oxidation (M))VTGGANLGR_	FDTGNLCM(1)VTGGANLGR	FDTGNLCM(110)VTGGANLGR	0	1	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.914178	1797.8138	2.3259	0.0020931	-3.7131	-0.0033415	-1.3872	-0.0012484	899.911756286595	11.199	0.20398	11.199	11.101	11.305	0	324	100	1.1079963157843	0.065971516649187	1.1079963157843	447.190382768263	0	26.6262868945281						1005	24	5	NaN	NaN	NaN	0.00019908	1	27153	113.34	100.16	1	243720			5793	1394	4935	5060	5793	5793	497	
FDTGNLCMVTGGANLGR	17	Oxidation (M)	_FDTGNLCM(Oxidation (M))VTGGANLGR_	FDTGNLCM(1)VTGGANLGR	FDTGNLCM(82)VTGGANLGR	0	1	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.278544	1797.8138	0.2422	0.00014539	0.81858	0.00049138	1.0608	0.00063676	600.279502630698	11.199	0.12412	11.199	11.128	11.252	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	553.669768820564	0	14.7365200897822						252	15	4	NaN	NaN	NaN	0.0024912	1	27154	82.437	81.385	1	59659			5794	1394	4935	5060	5794	5794	497	
FDTIYQILLK	10	Unmodified	_FDTIYQILLK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.360639	1252.70673	0.83419	0.00052334	-1.4877	-0.00093334	-0.65354	-0.00041	627.359712648434	17.77	0.19505	17.77	17.716	17.912	0	561	43	0.948993180460448	0.0283318814612601	0.948993180460448	384.289270681224	0	11.4728306672255						490	23	4	NaN	NaN	NaN	3.6446E-07	1	11001	110.22	92.823	1	219480			5795	1745	4936	5061	5795	5795		
FDTQLFHTIGVEFLNK	16	Unmodified	_FDTQLFHTIGVEFLNK_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.999993	1907.97815	-1.036	-0.00065994	0.21926	0.00013967	-0.81675	-0.00052027	637.334341873577	17.929	0.11524	17.929	17.894	18.009	0	690	37	0.86171403876517	0.024433089026624	0.86171403876517	521.452630464346	0	14.7852976395278						321	14	4	NaN	NaN	NaN	1.959E-06	1	29789	96.313	78.898	1	99078			5796	1181	4937	5062	5796	5796		
FDTQLFHTIGVEFLNK	16	Unmodified	_FDTQLFHTIGVEFLNK_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.999993	1907.97815	-1.0718	-0.00068272	0.60965	0.00038834	-0.46213	-0.00029438	637.334451814693	17.929	0.053194	17.929	17.903	17.956	0	627	19	0.90440375274676	0.0121793027426124	0.90440375274676	547.285634591174	0	7.37011253007813						80	7	3	NaN	NaN	NaN	0.037652	1	29790	30.875	29.993	1	13325			5797	1181	4937	5062	5797	5797		
FDTQLFHTIGVEFLNK	16	Unmodified	_FDTQLFHTIGVEFLNK_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.996351	1907.97815	0.80134	0.00076528	1.4613	0.0013955	2.2626	0.0021608	955.499686208256	17.929	0.062077	17.929	17.903	17.965	0	186	37	1.1997861197946	0.0238728485495119	1.1997861197946	484.022910742578	0	9.63088791578099						182	8	3	NaN	NaN	NaN	0.0042804	1	29791	31.722	29.421	1	34876			5798	1181	4937	5062	5798	5798		
FDTQYPYGEK	10	Unmodified	_FDTQYPYGEK_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.282586	1246.55062	1.6538	0.0010324	-0.19615	-0.00012245	1.4576	0.00090996	624.28235450915	6.6402	0.38128	6.6402	6.5338	6.9151	0	600	43	0.922661313351899	0.0283829455526903	0.922661313351899	373.646443916177	0	11.4941273901493						973	44	4	NaN	NaN	NaN	1.6693E-05	1	10805	134.66	93.634	1	485340			5799	892	4938	5063	5799	5799		
FDVNTSAVQVLIEHIGNLDR	20	Unmodified	_FDVNTSAVQVLIEHIGNLDR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.393842	2239.1597	0.27137	0.00020282	-0.61493	-0.0004596	-0.34357	-0.00025678	747.728105402483	19.907	0.053178	19.907	19.898	19.951	0	498	34	0.991429299781895	0.0221977126906285	0.991429299781895	599.307308197161	0	13.4182552842458						194	7	6	NaN	NaN	NaN	2.482E-16	1	35085	168.69	143.94	1	103600			5800	1503	4939	5064	5800	5800		
FDVPGDENAEMDAR	14	Unmodified	_FDVPGDENAEMDAR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.330469	1564.64639	2.0672	0.0016193	-0.60377	-0.00047295	1.4634	0.0011464	783.32999587205	8.9375	0.23071	8.9375	8.8842	9.1149	0	441	55	1.02971785871157	0.0362308083382761	1.02971785871157	416.070683680969	0	14.6395219506853						935	27	5	NaN	NaN	NaN	0.00021183	1	20473	106.11	83.214	1	547970			5801	1095	4940	5065	5801	5801		
FDWLDLDPLSK	11	Unmodified	_FDWLDLDPLSK_			0	0	0	O00443	O00443	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.84281	1347.67107	0.19554	0.00013196	-1.1839	-0.00079898	-0.98841	-0.00066702	675.343232447645	19.454	0.079775	19.454	19.419	19.499	0	510	19	0.983355730988811	0.0121137032584996	0.983355730988811	397.898128902093	0	4.90160346732847						130	10	3	NaN	NaN	NaN	0.0051384	1	13832	48.785	31.316	1	26245			5802	80	4941	5066	5802	5802		
FDYAFDDSAPNEMVYR	16	Unmodified	_FDYAFDDSAPNEMVYR_			0	0	0	O00139	O00139	O00139	KIF2A	Kinesin-like protein KIF2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.411991	1938.80943	2.2745	0.0022072	2.7349	0.002654	5.0094	0.0048612	970.916667291955	13.496	0.070928	13.496	13.469	13.54	0	237	34	1.16593139812432	0.0219300818025272	1.16593139812432	470.311081664708	0	8.8461126530554						152	9	3	NaN	NaN	NaN	0.033394	1	30479	55.578	53.868	1	33811			5803	50	4942	5067	5803	5803		
FDYSGVGSSDGNSEESTLGK	20	Unmodified	_FDYSGVGSSDGNSEESTLGK_			0	0	0	Q9NUJ1	Q9NUJ1	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.43999	2034.86542	2.0788	0.0021172	-0.94147	-0.00095883	1.1374	0.0011583	1018.4387692916	8.5205	0.062077	8.5205	8.4938	8.5559	0	249	70	1.15795408347545	0.0458538294871818	1.15795408347545	466.936487103671	0	18.4902202656721						316	8	3	NaN	NaN	NaN	2.1896E-12	1	32235	118.87	106.19	1	60401			5804	3050	4943	5068	5804	5804		
FEAAETLEEAAMR	13	Unmodified	_FEAAETLEEAAMR_			0	0	0	Q07866	Q07866	Q07866	KLC1	Kinesin light chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.342849	1466.67114	0.66726	0.00048999	3.406	0.0025012	4.0733	0.0029912	734.346811875472	12.21	0.088689	12.21	12.174	12.263	0	480	31	1.00353128488872	0.0201616152840689	1.00353128488872	405.727170229137	0	8.15133044642533						174	11	3	NaN	NaN	NaN	0.00052755	1	17472	67.548	60.801	1	39194			5805	1571	4944	5069	5805	5805		
FEAFEHENK	9	Unmodified	_FEAFEHENK_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	384.176972	1149.50909	0.5387	0.00020696	-0.50707	-0.0001948	0.031631	1.2152E-05	384.176856202522	3.8647	0.16845	3.8647	3.8292	3.9977	0	885	28	0.728786607772777	0.0184900723378054	0.728786607772777	443.10522842477	0	11.2420393561736						325	20	3	NaN	NaN	NaN	0.013711	1	8046	49.96	25.11	1	103170			5806	3183	4945	5070	5806	5806		
FEAFEHENK	9	Unmodified	_FEAFEHENK_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.76182	1149.50909	2.6552	0.0015287	0.47278	0.00027221	3.1279	0.0018009	575.762319051475	3.8736	0.27486	3.8736	3.8115	4.0864	0	603	34	0.920633820089869	0.022302429094845	0.920633820089869	373.16994554985	0	9.04007225168016						357	32	4	NaN	NaN	NaN	0.0097552	1	8047	67.507	38.406	1	107860			5807	3183	4945	5070	5807	5807		
FEAGQFEPSETTAK	14	Unmodified	_FEAGQFEPSETTAK_			0	0	0	Q5JTJ3	Q5JTJ3	Q5JTJ3	COA6	Cytochrome c oxidase assembly factor 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.359553	1540.70455	3.4696	0.0026763	-0.53386	-0.0004118	2.9357	0.0022645	771.359534205506	7.7132	0.35481	7.7132	7.5801	7.935	0	420	76	1.04379886199097	0.0502962745765683	1.04379886199097	421.817780205447	0	20.325623706874						1597	39	5	NaN	NaN	NaN	1.2253E-05	1	19730	97.594	72.773	1	824550			5808	1969	4946	5071	5808	5808		
FEAHPNDLYVEGLPENIPFR	20	Unmodified	_FEAHPNDLYVEGLPENIPFR_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.390208	2356.1488	0.81789	0.00064318	-0.5944	-0.00046743	0.22349	0.00017575	786.724023725752	15.296	0.11527	15.296	15.251	15.367	-1.7764E-15	540	103	0.963152256458504	0.0688251341163073	0.963152256458504	582.036010055028	0	41.5912501724837						1074	14	5	NaN	NaN	NaN	1.0757E-05	1	36106	82.822	75.685	1	284240			5809	1459	4947	5072	5809	5809		
FECGEGEEAAETE	13	Unmodified	_FECGEGEEAAETE_			0	0	0	P43897	P43897	P43897	TSFM	Elongation factor Ts, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.272286	1456.53002	1.176	0.00085764	0.44927	0.00032764	1.6253	0.0011853	729.272879584655	5.4608	0.12412	5.4608	5.4342	5.5583	0	519	37	0.97729762293174	0.0242408171075922	0.97729762293174	395.146634341784	0	9.80118754921892						259	15	4	NaN	NaN	NaN	1.6961E-05	1	17140	95.311	93.667	1	67317			5810	1069	4948	5073	5810	5810		
FECSEEEVLSCLYNR	15	Unmodified	_FECSEEEVLSCLYNR_			0	0	0	Q13131	Q13131	Q13131	PRKAA1	5-AMP-activated protein kinase catalytic subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.916583	1933.81861	1.8026	0.0017448	1.561	0.0015109	3.3636	0.0032557	967.918455413556	14.063	0.079809	14.063	14.028	14.107	0	261	28	1.14997238118939	0.0179625356920501	1.14997238118939	463.882077064032	0	7.24582477150193						179	10	4	NaN	NaN	NaN	2.9797E-05	1	30394	99.276	97.566	1	37929			5811	1631	4949	5074	5811	5811		
FEDEDSDDVPR	11	Unmodified	_FEDEDSDDVPR_			0	0	0	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.270404	1322.52625	2.25	0.0014901	0.70699	0.00046822	2.9569	0.0019583	662.270905578228	5.0706	0.088654	5.0706	5.0351	5.1238	0	522	28	0.975277694896658	0.0181818689972096	0.975277694896658	394.705639112837	0	7.35840290448755						163	11	3	NaN	NaN	NaN	0.00023982	1	13049	65.933	64.133	1	37249			5812	1147	4950	5075	5812	5812		
FEDEDSDDVPRK	12	Unmodified	_FEDEDSDDVPRK_			0	0	1	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.547682	1450.62122	-0.9642	-0.0004672	3.4166	0.0016555	2.4524	0.0011883	484.549358304229	3.4301	0.079922	3.4301	3.4124	3.4923	0	789	25	0.794378096728713	0.0163636329074536	0.794378096728713	481.796621145196	0	9.92467324683031						122	10	3	NaN	NaN	NaN	0.0077402	1	16988	54.584	54.223	1	24606			5813	1147	4951	5076	5813	5813		
FEDEEAQAVYWHSSAHIMGEAMER	24	Unmodified	_FEDEEAQAVYWHSSAHIMGEAMER_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	706.558892	2822.20646	0.78662	0.00055579	0.21172	0.00014959	0.99834	0.00070539	706.809889593746	12.538	0.16847	12.538	12.493	12.662	0	546	28	0.959108205975751	0.0182020073361659	0.959108205975751	772.039860585983	0	14.6518141734614						454	20	6	NaN	NaN	NaN	1.8155E-09	1	37939	92.178	90.446	1	109950			5814	857	4952	5077	5814	5814		
FEDENFHYK	9	Unmodified	_FEDENFHYK_			0	0	0	Q08752	Q08752	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.180494	1227.51965	-1.9004	-0.0007795	1.4404	0.00059082	-0.45998	-0.00018867	410.181041598068	5.4254	0.12413	5.4254	5.381	5.5051	0	843	25	0.757518876820989	0.0164047100616799	0.757518876820989	460.227998471868	0	9.96662539801287						159	15	3	NaN	NaN	NaN	0.040627	1	10209	39.324	35.979	1	40668			5815	1578	4953	5078	5815	5815		
FEDENFILK	9	Unmodified	_FEDENFILK_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.790047	1153.56554	1.203	0.00069508	0.050826	2.9367E-05	1.2538	0.00072445	577.789408721243	11.518	0.43464	11.518	11.323	11.758	0	588	118	0.93076847747433	0.0790066728753354	0.93076847747433	377.262205205708	0	32.0232499877899						3099	50	6	NaN	NaN	NaN	4.3129E-06	1	8157	118.06	85.931	1	8266900			5816	1417	4954	5079	5816	5816		
FEDGTISFLDVIALK	15	Unmodified	_FEDGTISFLDVIALK_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.448171	1666.88179	1.3634	0.0011377	-1.8144	-0.001514	-0.45095	-0.0003763	834.948290111575	19.907	0.026583	19.907	19.898	19.924	0	369	31	1.07793901817685	0.0200561522597538	1.07793901817685	435.32064414841	0	8.09958353267638						56	4	2	NaN	NaN	NaN	0.011979	1	23553	51.454	49.152	1	20751			5817	2516	4955	5080	5817	5817		
FEDPRDAEDAIYGR	14	Unmodified	_FEDPRDAEDAIYGR_			0	0	1	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.921631	1652.74306	-1.4394	-0.00079441	0.46725	0.00025789	-0.97211	-0.00053653	551.921884633903	9.4076	0.18633	9.4076	9.3011	9.4874	0	753	31	0.81889964927511	0.0204147391156737	0.81889964927511	496.095668069164	0	12.3674050282143						400	22	4	NaN	NaN	NaN	1.6654E-06	1	23123	95.138	89.987	1	109870			5818	1644	4956	5081	5818	5818		
FEDQPEGIDLEVVTESTGK	19	Unmodified	_FEDQPEGIDLEVVTESTGK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.99968	2091.98481	1.829	0.001915	1.7604	0.0018431	3.5894	0.0037581	1047.50379792984	14.214	0.17734	14.214	14.169	14.347	0	135	43	1.23356193185193	0.0277943958750091	1.23356193185193	497.332740525943	0	11.2058119781864						489	21	4	NaN	NaN	NaN	1.6249E-05	1	33215	68.42	59.667	1	103020			5819	69	4957	5082	5819	5819		
FEDSPSYVK	9	Unmodified	_FEDSPSYVK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.253297	1070.49204	1.5523	0.00083241	4.5321	0.0024304	6.0844	0.0032628	536.254495926666	5.177	0.21284	5.177	5.0972	5.31	0	645	34	0.892219381832517	0.0223457630982734	0.892219381832517	361.968672813106	0	9.06555761551078						211	25	2	NaN	NaN	NaN	0.030446	1	5961	58.426	24.613	1	92402			5820	251	4958	5083	5820	5820		
FEDVVNQSSPK	11	Unmodified	_FEDVVNQSSPK_			0	0	0	Q01085	Q01085	Q01085	TIAL1	Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.306592	1248.59863	1.7685	0.0011059	3.7539	0.0023473	5.5224	0.0034532	625.308772454256	5.3278	0.28376	5.3278	5.1947	5.4785	0	564	76	0.946969335010767	0.050589169233684	0.946969335010767	383.483458570927	0	20.4865235512008						1165	33	4	NaN	NaN	NaN	0.0087122	1	10873	43.272	27.69	1	418320			5821	1512	4959	5084	5821	5821		
FEEAENSLLHLK	12	Unmodified	_FEEAENSLLHLK_			0	0	0	Q15165	Q15165	Q15165	PON2	Serum paraoxonase/arylesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.248908	1428.72489	-0.10376	-4.9518E-05	0.91587	0.0004371	0.81211	0.00038758	477.250183222735	9.78	0.15073	9.78	9.7356	9.8864	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	499.217647878831	0	12.381769671452						301	18	4	NaN	NaN	NaN	0.028699	1	16352	64.906	59.41	1	126320			5822	1819	4960	5085	5822	5822		
FEEFQNTLSK	10	Unmodified	_FEEFQNTLSK_			0	0	0	P40222	P40222	P40222	TXLNA	Alpha-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.803685	1241.59282	1.3989	0.00086983	0.61305	0.0003812	2.0119	0.001251	621.804467976211	8.1833	0.14187	8.1833	8.1036	8.2454	0	549	34	0.957085760909907	0.0222530586923161	0.957085760909907	387.604123930203	0	9.0121258423095						184	17	3	NaN	NaN	NaN	0.033796	1	10665	37.591	8.2816	1	58995			5823	1015	4961	5086	5823	5823		
FEEHVQSVDIAAFNK	15	Unmodified	_FEEHVQSVDIAAFNK_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.621293	1732.84205	0.079967	4.6271E-05	0.71015	0.00041091	0.79012	0.00045718	578.621709105887	10.321	0.27488	10.321	10.268	10.543	0	663	175	0.880024865079826	0.118110124471367	0.880024865079826	532.921110207818	0	71.5245456778712						1683	32	6	NaN	NaN	NaN	4.4178E-12	1	25405	198.33	193.8	1	1214000			5824	890	4962	5087	5824	5824		
FEEHVQSVDIAAFNK	15	Unmodified	_FEEHVQSVDIAAFNK_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.428301	1732.84205	2.7122	0.0023527	-0.99944	-0.00086694	1.7128	0.0014857	867.427631801807	10.321	0.19504	10.321	10.268	10.463	0	318	85	1.11199926528787	0.0560490621471661	1.11199926528787	448.934756892635	0	22.6280474048553						986	23	5	NaN	NaN	NaN	3.3729E-07	1	25406	85.081	79.053	1	324500			5825	890	4962	5087	5825	5825		
FEELEQR	7	Unmodified	_FEELEQR_			0	0	0		REV__Q8N6I1	REV__Q8N6I1			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.732532	949.45051	-0.49906	-0.00023742	0.77579	0.00036907	0.27673	0.00013165	475.732408044019	8.7156	0.15096	8.7156	8.6712	8.8221	0	729	43	0.835224628594324	0.0285568061062612	0.835224628594324	339.394409164781	0	11.6040882946415						337	18	3	NaN	NaN	NaN	0.036708	1	3229	31.058	3.3536	1	108360	+		5826	3500	4963	5088	5826	5826		
FEELNMDLFR	10	Unmodified	_FEELNMDLFR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.313363	1312.61217	0.68531	0.00045046	0.39902	0.00026228	1.0843	0.00071275	657.313773847448	15.916	0.43451	15.916	15.81	16.245	0	546	76	0.959108205975751	0.0505471707378068	0.959108205975751	388.191982701264	0	20.4585950848852						2017	50	6	NaN	NaN	NaN	3.3718E-07	1	12723	142.56	103.24	1	3334600			5827	638	4964	5089	5827	5827		
FEELNMDLFR	10	Oxidation (M)	_FEELNM(Oxidation (M))DLFR_	FEELNM(1)DLFR	FEELNM(74)DLFR	0	1	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.31082	1328.60709	2.2427	0.0014921	0.096842	6.443E-05	2.3395	0.0015565	665.310950776608	12.857	0.21289	12.857	12.777	12.99	0	480	82	1.00353128488872	0.0544627420649515	1.00353128488872	406.120960153018	0	22.0406293585923						1052	25	4	NaN	NaN	NaN	0.0081557	1	13232	74.269	46.532	1	552340			5828	638	4964	5090	5828	5828	186	
FEEMIQQIK	9	Unmodified	_FEEMIQQIK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.299724	1164.5849	1.0779	0.00062875	0.30368	0.00017714	1.3816	0.00080588	583.30044915612	9.2303	0.32814	9.2303	9.1149	9.443	0	585	49	0.932794566565362	0.0324196809968852	0.932794566565362	378.041160446762	0	13.1389850077107						740	38	5	NaN	NaN	NaN	8.9027E-05	1	8462	129.72	100.62	1	413830			5829	1113	4965	5091	5829	5829		
FEENTYCFGR	10	Unmodified	_FEENTYCFGR_			0	0	0	Q9H845	Q9H845	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.777145	1321.53974	1.1061	0.000732	0.48156	0.00031869	1.5877	0.0010507	661.77743886863	7.9615	0.088701	7.9615	7.9261	8.0148	0	552	25	0.955063035883597	0.0161806815311534	0.955063035883597	386.527528028093	0	6.54855082760082						149	11	3	NaN	NaN	NaN	0.00032249	1	13017	78.816	71.169	1	38712			5830	2922	4966	5092	5830	5830		
FEETGQELAELLEEEK	16	Unmodified	_FEETGQELAELLEEEK_			0	0	0	P36405	P36405	P36405	ARL3	ADP-ribosylation factor-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.451836	1892.88912	1.634	0.0015482	-1.2502	-0.0011845	0.38385	0.00036368	947.951240483447	16.032	0.10642	16.032	16.005	16.111	0	267	40	1.14597988355104	0.0259565934896919	1.14597988355104	462.342781179051	0	10.4721241587342						252	13	4	NaN	NaN	NaN	0.0016176	1	29437	67.887	62.499	1	46187			5831	983	4967	5093	5831	5831		
FEEYGPVIECDIVK	14	Unmodified	_FEEYGPVIECDIVK_			0	0	0	Q9BWF3;Q9BQ04	Q9BWF3	Q9BWF3	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.408188	1696.80182	1.3397	0.0011379	-0.50465	-0.00042865	0.83502	0.00070927	849.407791624048	13.096	0.13301	13.096	12.999	13.132	0	366	37	1.07994477139643	0.0240707016465822	1.07994477139643	436.06724594	0	9.71942719005528						369	16	4	NaN	NaN	NaN	5.7922E-05	1	24396	68.548	54.75	1	81354			5832	2778	4968	5094	5832	5832		
FEFLGINR	8	Unmodified	_FEFLGINR_			0	0	0	Q8N3X1	Q8N3X1	Q8N3X1	FNBP4	Formin-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.269084	994.523616	-0.89059	-0.00044375	-3.0527	-0.0015211	-3.9433	-0.0019648	498.267489656849	13.292	0.11528	13.292	13.238	13.354	0	711	40	0.847456455381371	0.0264967721372047	0.847456455381371	344.142038658384	0	10.7600256311231						268	14	3	NaN	NaN	NaN	0.00032397	1	4155	84.699	67.004	1	70416			5833	2250	4969	5095	5833	5833		
FEFVPSPGNHFIWYR	15	Unmodified	_FEFVPSPGNHFIWYR_			0	0	0	Q9Y276	Q9Y276	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.645773	1894.91549	-0.38251	-0.00024199	-0.30408	-0.00019238	-0.68659	-0.00043437	632.979703129475	15.446	0.088788	15.446	15.393	15.482	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	523.942210883486	0	9.8532485799002						144	11	4	NaN	NaN	NaN	0.01202	1	29494	24.689	21.974	1	26429			5834	3333	4970	5096	5834	5834		
FEGAIYR	7	Unmodified	_FEGAIYR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.221603	854.428653	-1.3785	-0.00059029	-0.59794	-0.00025605	-1.9764	-0.00084634	428.222281697072	5.5228	0.17737	5.5228	5.4873	5.6647	0	792	34	0.792332785124922	0.0225015628542545	0.792332785124922	322.475693590036	0	9.15802958619395						262	21	3	NaN	NaN	NaN	0.0094774	1	1627	64.547	46.853	1	65806			5835	801	4971	5097	5835	5835		
FEGFIQTR	8	Unmodified	_FEGFIQTR_			0	0	0	O14672	O14672	O14672	ADAM10	Disintegrin and metalloproteinase domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.258717	996.50288	-0.30745	-0.0001535	-2.3009	-0.0011488	-2.6084	-0.0013022	499.257208849255	8.5914	0.097516	8.5914	8.5382	8.6357	0	708	19	0.849494101904619	0.0122233322127752	0.849494101904619	344.960150844645	0	4.96361600920994						103	12	2	NaN	NaN	NaN	0.041189	1	4207	37.722	22.141	1	24550			5836	111	4972	5098	5836	5836		
FEGGDRDLEHLSK	13	Unmodified	_FEGGDRDLEHLSK_			0	0	1	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.865337	1501.71612	2.3509	0.0017675	-2.3309	-0.0017525	0.019993	1.5032E-05	751.863400796324	4.9199	0.13298	4.9199	4.8844	5.0174	0	459	46	1.01763759082241	0.0302111061455164	1.01763759082241	411.340621141709	0	12.2116707159293						422	16	4	NaN	NaN	NaN	0.0086993	1	18564	72.846	58.391	1	172980			5837	680	4973	5099	5837	5837		
FEGGDRDLEHLSK	13	Unmodified	_FEGGDRDLEHLSK_			0	0	1	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.579317	1501.71612	-0.4953	-0.00024843	1.1804	0.00059208	0.68513	0.00034365	501.580239456324	4.9199	0.38128	4.9199	4.7869	5.1681	0	795	61	0.790287188799094	0.0409034050625265	0.790287188799094	479.161578362336	0	24.8002756566724						1000	44	5	NaN	NaN	NaN	0.00586	1	18566	83.214	76.523	1	669400			5838	680	4973	5099	5838	5838		
FEGGVVIAADMLGSYGSLAR	20	Unmodified	_FEGGVVIAADMLGSYGSLAR_			0	0	0	P28070	P28070	P28070	PSMB4	Proteasome subunit beta type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.00913	2012.00371	1.0805	0.0010881	0.2454	0.00024712	1.3259	0.0013352	1007.51187747062	18.639	0.10641	18.639	18.585	18.692	0	177	49	1.2057522832638	0.0318217315415521	1.2057522832638	486.248192668818	0	12.8328676332986						408	13	5	NaN	NaN	NaN	2.5506E-07	1	31836	105.79	96.632	1	114100			5839	873	4974	5100	5839	5839		
FEGQFSINK	9	Unmodified	_FEGQFSINK_			0	0	0	Q969X5	Q969X5	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.269281	1068.52401	0.73424	0.00039301	3.8815	0.0020776	4.6157	0.0024706	535.774179291454	7.5092	0.2926	7.5092	7.3053	7.5979	0	660	58	0.882057989648486	0.0386133059096635	0.882057989648486	357.854625382653	0	15.6655801356043						587	34	3	NaN	NaN	NaN	0.0074621	1	5918	62.969	30.841	1	228630			5840	2464	4975	5101	5840	5840		
FEGTTSLGEVR	11	Unmodified	_FEGTTSLGEVR_			0	0	0	Q4G0F5	Q4G0F5	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.30131	1194.58807	0.58958	0.00035274	0.6179	0.00036969	1.2075	0.00072243	598.301652488231	7.066	0.11537	7.066	7.0303	7.1457	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	386.952272318238	0	7.37674687606761						217	14	5	NaN	NaN	NaN	0.00023982	1	9283	74.424	42.472	1	49881			5841	1939	4976	5102	5841	5841		
FEHCNFNDVTTR	12	Unmodified	_FEHCNFNDVTTR_			0	0	0	P13987	P13987	P13987	CD59	CD59 glycoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.335889	1538.65723	1.8978	0.0014619	-3.2691	-0.0025183	-1.3714	-0.0010564	770.333600714715	5.4785	0.21277	5.4785	5.3721	5.5849	0	444	37	1.02770517576159	0.0241538670444676	1.02770517576159	415.318965394143	0	9.761125376976						273	25	3	NaN	NaN	NaN	0.00068247	1	19675	47.334	43.829	1	56499			5842	690	4977	5103	5842	5842		
FEHCNFNDVTTR	12	Unmodified	_FEHCNFNDVTTR_			0	0	0	P13987	P13987	P13987	CD59	CD59 glycoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.893018	1538.65723	-1.0217	-0.00052502	0.08315	4.273E-05	-0.93851	-0.00048229	513.893025722608	5.4785	0.088639	5.4785	5.4519	5.5405	0	813	34	0.778007628350577	0.0225235047805306	0.778007628350577	471.61302119495	0	13.6533084642949						248	11	4	NaN	NaN	NaN	0.0025941	1	19676	66.664	63.993	1	71133			5843	690	4977	5103	5843	5843		
FEIGEGENLDLPYGLER	17	Unmodified	_FEIGEGENLDLPYGLER_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.975812	1949.93707	1.8284	0.0017845	-0.29557	-0.00028847	1.5328	0.001496	976.47717846033	16.209	0.31035	16.209	16.103	16.413	0	243	67	1.16194328902838	0.0438873183410309	1.16194328902838	468.683366973719	0	17.7024613178169						1613	36	5	NaN	NaN	NaN	1.1614E-10	1	30716	112.68	104.72	1	484150			5844	1530	4978	5104	5844	5844		
FEILSVESLCEGMR	14	Unmodified	_FEILSVESLCEGMR_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.399841	1668.78513	1.0086	0.0008426	1.4293	0.001194	2.4379	0.0020366	835.401526700442	16.723	0.097558	16.723	16.697	16.794	0	357	46	1.08596037261705	0.0300697247632449	1.08596037261705	438.555895162608	0	12.1434035655078						262	12	3	NaN	NaN	NaN	0.0041942	1	23593	62.705	47.557	1	60942			5845	1766	4979	5105	5845	5845		
FEIPYFTTSGIQVR	14	Unmodified	_FEIPYFTTSGIQVR_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.432855	1656.85116	2.0428	0.0016943	-2.7775	-0.0023038	-0.73474	-0.00060942	829.432432036641	17.45	0.29263	17.45	17.273	17.566	0	351	40	1.08996939197032	0.0260532455206195	1.08996939197032	440.201027165622	0	10.5220068780492						692	34	3	NaN	NaN	NaN	0.005642	1	23245	28.328	22.3	1	210790			5846	2787	4980	5106	5846	5846		
FEIVYNLLSLR	11	Unmodified	_FEIVYNLLSLR_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.890095	1365.76564	-0.003363	-2.2999E-06	-0.38366	-0.00026238	-0.38702	-0.00026468	683.889485741302	18.816	0.062091	18.816	18.789	18.851	0	525	25	0.973257487423603	0.0161627789282648	0.973257487423603	393.759073408744	0	6.53911317071015						132	8	4	NaN	NaN	NaN	0.00081968	1	14376	48.785	40.312	1	29236			5847	338	4981	5107	5847	5847		
FEIWDTAGQER	11	Unmodified	_FEIWDTAGQER_			0	0	0	P51148;P20339;P61020	P51148;P20339;P61020	P51148	RAB5C;RAB5A;RAB5B	Ras-related protein Rab-5C;Ras-related protein Rab-5A;Ras-related protein Rab-5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.317491	1350.62043	1.3177	0.0008912	-0.11913	-8.0567E-05	1.1986	0.00081063	676.317418019147	11.509	0.23063	11.509	11.456	11.687	0	531	49	0.969216233931596	0.0323300376824983	0.969216233931596	392.168124351229	0	13.0815083304153						761	27	5	NaN	NaN	NaN	1.3742E-05	1	13895	126.29	90.082	1	484660			5848	1179;779;1323	4982	5108	5848	5848		
FELALQLGELK	11	Unmodified	_FELALQLGELK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.863546	1259.71254	0.07459	4.7056E-05	-0.46657	-0.00029434	-0.39198	-0.00024729	630.86361510603	16.484	0.097502	16.484	16.448	16.546	0	552	28	0.955063035883597	0.0182045269808345	0.955063035883597	386.723769577804	0	7.37137030007216						159	12	3	NaN	NaN	NaN	0.00055167	1	11215	66.664	34.524	1	38007			5849	973	4983	5109	5849	5849		
FELAVDAVHR	10	Unmodified	_FELAVDAVHR_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.208495	1155.60366	-1.9886	-0.00076803	-0.66728	-0.00025771	-2.6559	-0.0010257	386.208152492822	8.7245	0.11531	8.7245	8.6891	8.8044	0	849	22	0.753417699604308	0.014355121376784	0.753417699604308	458.052443837298	0	8.7274276031348						145	14	3	NaN	NaN	NaN	0.015022	1	8219	58.426	44.778	1	35625			5850	2391	4984	5110	5850	5850		
FELDEDVK	8	Unmodified	_FELDEDVK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.740022	993.465492	0.36001	0.00017919	1.2534	0.00062385	1.6134	0.00080303	497.740499115599	7.935	0.14188	7.935	7.8818	8.0237	0	666	37	0.877991458330206	0.0244059657771015	0.877991458330206	356.547102041141	0	9.91111734377273						263	17	3	NaN	NaN	NaN	0.0018943	1	4130	79.809	32.974	1	70410			5851	1072	4985	5111	5851	5851		
FELFVMK	7	Unmodified	_FELFVMK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.246232	912.477911	-1.2348	-0.0005646	-1.853	-0.00084729	-3.0878	-0.0014119	457.245604369789	14.462	0.27488	14.462	14.409	14.684	0	771	58	0.806643990516186	0.0388069022420119	0.806643990516186	327.970101131274	0	15.7783406342116						830	32	4	NaN	NaN	NaN	0.01605	1	2545	66.087	47.132	1	520690			5852	1801	4986	5112	5852	5852		
FELLCSPLFNK	11	Unmodified	_FELLCSPLFNK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.355031	1366.69551	0.35202	0.0002409	1.1082	0.00075839	1.4602	0.0009993	684.356408495227	16.519	0.20394	16.519	16.44	16.644	0	495	46	0.993446994398923	0.0302696119755409	0.993446994398923	401.924568082417	0	12.2463511268185						350	24	3	NaN	NaN	NaN	0.00018388	1	14397	76.572	66.322	1	95407			5853	1585	4987	5113	5853	5853		
FELQHGTEEQQEEVR	15	Unmodified	_FELQHGTEEQQEEVR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.290383	1857.84932	0.327	0.00020283	2.6661	0.0016538	2.9931	0.0018566	620.291892827857	5.3987	0.088658	5.3987	5.3721	5.4608	0	687	31	0.863749705078866	0.0203580790440647	0.863749705078866	522.786172880168	0	12.3217665581337						231	11	4	NaN	NaN	NaN	1.7954E-09	1	28645	135.5	115.17	1	67754			5854	396	4988	5114	5854	5854		
FELSCYSLAPQIK	13	Unmodified	_FELSCYSLAPQIK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.394884	1554.77522	1.8861	0.0014681	0.53498	0.00041643	2.4211	0.0018845	778.396203417989	14.072	0.35467	14.072	13.948	14.302	0	399	79	1.0578662689527	0.0522035796662552	1.0578662689527	427.468210021048	0	21.0946992181894						1778	41	5	NaN	NaN	NaN	6.6771E-07	1	20202	130.79	117.61	1	1549200			5855	488	4989	5115	5855	5855		
FELTGIPPAPR	11	Unmodified	_FELTGIPPAPR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.334956	1196.65536	0.65865	0.00039475	-1.9226	-0.0011523	-1.264	-0.00075756	599.33381482039	12.582	0.52318	12.582	12.449	12.972	0	612	61	0.914549654013882	0.0405414565630254	0.914549654013882	370.530617260895	0	16.4254076954969						705	60	2	NaN	NaN	NaN	0.043343	1	9364	46.447	21.193	1	294070			5856	640	4990	5116	5856	5856		
FELTGIPPAPR	11	Unmodified	_FELTGIPPAPR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.334956	1196.65536	0.34187	0.0002049	-0.33771	-0.0002024	0.004163	2.495E-06	599.334685283734	11.687	0.53211	11.687	11.456	11.988	0	603	88	0.920633820089869	0.0587566428434727	0.920633820089869	372.995615884351	0	23.8053064165714						989	61	2	NaN	NaN	NaN	0.070917	1	9365	13.274	2.5718	1	772100			5857	640	4990	5116	5857	5857		
FENAFLSHVVSQHQALLGTIR	21	Unmodified	_FENAFLSHVVSQHQALLGTIR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	592.569655	2366.24951	-0.72828	-0.00043156	-0.06802	-4.0307E-05	-0.7963	-0.00047186	592.820559979828	14.897	0.1064	14.897	14.861	14.967	0	696	55	0.857641857947968	0.0366394639132938	0.857641857947968	691.015311499853	0	29.5209828375336						490	13	5	NaN	NaN	NaN	6.6405E-08	1	36187	84.266	77.584	1	181030			5858	840	4991	5117	5858	5858		
FENAFLSHVVSQHQALLGTIR	21	Unmodified	_FENAFLSHVVSQHQALLGTIR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	592.569655	2366.24951	0.25999	0.00015406	-0.24187	-0.00014332	0.018118	1.0736E-05	592.820386036601	14.897	0.15959	14.897	14.852	15.012	0	609	58	0.916577990479294	0.0385437520170938	0.916577990479294	738.501065891836	0	31.0552972510388						854	19	6	NaN	NaN	NaN	1.3658E-11	1	36188	162	157.17	1	647590			5859	840	4991	5117	5859	5859		
FENAFLSHVVSQHQALLGTIR	21	Unmodified	_FENAFLSHVVSQHQALLGTIR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.757114	2366.24951	1.2192	0.00096289	0.74607	0.00058922	1.9653	0.0015521	790.09223895972	14.897	0.20392	14.897	14.852	15.056	0	480	109	1.00353128488872	0.0725117551318532	1.00353128488872	606.422012446984	0	43.8179906648325						1721	24	6	NaN	NaN	NaN	1.3372E-29	1	36189	213.35	199.35	1	1132900			5860	840	4991	5117	5860	5860		
FENLGIQPPK	10	Unmodified	_FENLGIQPPK_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.813856	1141.61316	0.32634	0.00018661	-1.3684	-0.00078245	-1.042	-0.00059584	571.813268419334	9.3987	0.26606	9.3987	9.2568	9.5228	0	642	82	0.894250814548268	0.0547803180218731	0.894250814548268	362.505576313322	0	22.2064888642875						691	31	3	NaN	NaN	NaN	1.6949E-05	1	7838	123.5	98.653	1	216710			5861	746	4992	5118	5861	5861		
FEPIHGNFLLTGAYDNTAK	19	Unmodified	_FEPIHGNFLLTGAYDNTAK_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.353095	2107.03745	1.1289	0.00079401	-1.1691	-0.00082228	-0.040206	-2.8279E-05	703.686255021267	13.513	0.19508	13.513	13.469	13.664	0	597	40	0.924688525662974	0.0263537653577723	0.924688525662974	559.179200623619	0	15.9366933158557						418	23	4	NaN	NaN	NaN	0.0010829	1	33422	31.767	29.052	1	108810			5862	188	4993	5119	5862	5862		
FEPIHGNFLLTGAYDNTAK	19	Unmodified	_FEPIHGNFLLTGAYDNTAK_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.526	2107.03745	2.1515	0.0022688	-1.0159	-0.0010713	1.1355	0.0011974	1055.52856405362	13.513	0.070922	13.513	13.478	13.549	0	135	37	1.23356193185193	0.0238172335935567	1.23356193185193	497.30931970505	0	9.60189507298259						181	9	3	NaN	NaN	NaN	0.069083	1	33423	13.062	10.347	1	37085			5863	188	4993	5119	5863	5863		
FEPPLFHPNVYPSGTVCLSILEEDK	25	Unmodified	_FEPPLFHPNVYPSGTVCLSILEEDK_			0	0	0	P63279	P63279	P63279	UBE2I	SUMO-conjugating enzyme UBC9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	963.477354	2887.41023	1.4384	0.0013859	-0.18974	-0.00018281	1.2487	0.0012031	963.811488013715	17.548	0.14186	17.548	17.495	17.637	0	405	100	1.05384839605172	0.0662904159737712	1.05384839605172	636.156809715419	0	40.0162866865649						1149	17	5	NaN	NaN	NaN	2.9621E-06	1	38057	55.094	53.801	1	282500			5864	1437	4994	5120	5864	5864		
FEPQVDTEAEDMISAVK	17	Unmodified	_FEPQVDTEAEDMISAVK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.948406	1907.88226	0.94489	0.00090233	0.52309	0.00049953	1.468	0.0014019	954.949272330164	14.826	0.15962	14.826	14.764	14.923	-1.7764E-15	237	43	1.16593139812432	0.0279206072050588	1.16593139812432	470.365266224718	0	11.2638564003771						503	19	4	NaN	NaN	NaN	0.0027887	1	29776	43.518	29.741	1	155310			5865	3238	4995	5121	5865	5865		
FEPSSQMIEVQEGQNLK	17	Unmodified	_FEPSSQMIEVQEGQNLK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.319174	1962.93569	0.74158	0.00048597	0.52071	0.00034123	1.2623	0.0008272	655.320064336831	10.676	0.079813	10.676	10.649	10.729	0	597	22	0.924688525662974	0.0141904869950359	0.924688525662974	559.447639281779	0	8.58541468754538						192	10	4	NaN	NaN	NaN	0.0020187	1	30978	61.042	49.56	1	36692			5866	1452;1818	4996	5122	5866	5866		
FEPSSQMIEVQEGQNLK	17	Unmodified	_FEPSSQMIEVQEGQNLK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.475122	1962.93569	1.7608	0.0017299	-0.46716	-0.00045897	1.2936	0.001271	982.474064535576	10.684	0.062091	10.684	10.658	10.72	0	234	37	1.16792504164217	0.0239220824983335	1.16792504164217	471.07413045668	0	9.64879920356049						188	8	3	NaN	NaN	NaN	1.3009E-06	1	30979	95.345	82.663	1	33847			5867	1452;1818	4996	5122	5867	5867		
FEPVHFVASSSK	12	Unmodified	_FEPVHFVASSSK_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.840602	1333.66665	2.0362	0.0013598	0.64262	0.00042917	2.6788	0.001789	667.841015975308	7.3851	0.10638	7.3851	7.3408	7.4472	0	429	28	1.03776581230406	0.0181041477634616	1.03776581230406	419.958991787834	0	7.32631539002136						190	13	3	NaN	NaN	NaN	0.002487	1	13394	71.066	55.484	1	48412			5868	156	4997	5123	5868	5868		
FEQIYLSK	8	Unmodified	_FEQIYLSK_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.276575	1026.5386	0.42822	0.00022022	-0.52792	-0.0002715	-0.099701	-5.1274E-05	514.275965523292	8.343	0.15966	8.343	8.2898	8.4495	0	684	34	0.86578508874114	0.0223892235225879	0.86578508874114	351.435426306944	0	9.08812870037156						268	19	2	NaN	NaN	NaN	0.012855	1	4895	54.436	17.867	1	95139			5869	918	4998	5124	5869	5869		
FESFPAGSTLIFYK	14	Unmodified	_FESFPAGSTLIFYK_			0	0	0	Q5JTV8	Q5JTV8	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.911224	1605.8079	1.6891	0.0013579	-6.4814	-0.0052105	-4.7924	-0.0038526	803.903231643508	15.996	0.33698	15.996	15.872	16.209	0	363	49	1.08195024817156	0.0320810051607971	1.08195024817156	437.077555773431	0	12.9598263377936						742	39	4	NaN	NaN	NaN	0.00029399	1	21776	47.361	34.765	1	308090			5870	1970	4999	5125	5870	5870		
FESLEPEMNNQASR	14	Unmodified	_FESLEPEMNNQASR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.372669	1650.73078	2.6894	0.0022224	0.23134	0.00019117	2.9207	0.0024136	826.372252268913	8.0148	0.29274	8.0148	7.864	8.1567	0	381	61	1.06991323971056	0.0401510490919958	1.06991323971056	432.114314773685	0	16.2161214777806						475	34	3	NaN	NaN	NaN	1.6247E-05	1	23066	86.243	72.444	1	166260			5871	1511	5000	5126	5871	5871		
FESPEVAER	9	Unmodified	_FESPEVAER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.256371	1062.49819	0.84932	0.00045206	2.2688	0.0012076	3.1181	0.0016596	532.257478357899	5.2657	0.44335	5.2657	5.0174	5.4608	0	678	61	0.869855008346864	0.0406992154745967	0.869855008346864	352.929301444683	0	16.5130344125906						1027	51	2	NaN	NaN	NaN	0.0012821	1	5783	91.783	47.016	1	618030			5872	1206	5001	5127	5872	5872		
FESVIHEFDPYFNYR	15	Unmodified	_FESVIHEFDPYFNYR_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.972214	1961.89481	-0.28956	-0.00018965	-1.5566	-0.0010195	-1.8462	-0.0012092	655.305494886783	15.606	0.079799	15.606	15.571	15.65	-1.7764E-15	648	37	0.890187667287968	0.0243755060720344	0.890187667287968	538.576218468644	0	14.747528376271						153	10	3	NaN	NaN	NaN	0.0032694	1	30953	33.1	32.362	1	27536			5873	1097	5002	5128	5873	5873		
FETEQALR	8	Unmodified	_FETEQALR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.253631	992.49271	0.85201	0.00042366	1.0902	0.00054209	1.9422	0.00096575	497.254031030144	5.1681	0.53201	5.1681	5.0972	5.6292	0	717	64	0.84338031290707	0.0427905997016369	0.84338031290707	342.496307427369	0	17.3772403340748						939	61	2	NaN	NaN	NaN	3.7305E-05	1	4114	121.52	93.812	1	992900		+	5874	36	5003	5129	5874	5874		
FETFCLDPSLVTK	13	Unmodified	_FETFCLDPSLVTK_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.886892	1555.75923	1.3286	0.0010348	1.1093	0.00086405	2.4379	0.0018989	778.888126193684	15.313	0.21278	15.313	15.234	15.446	0	411	46	1.04982941439551	0.0301444498017385	1.04982941439551	424.218264696598	0	12.1808610139681						580	25	5	NaN	NaN	NaN	4.9325E-11	1	20229	141.44	132.97	1	178780			5875	3212	5004	5130	5875	5875		
FETLQAQAGK	10	Unmodified	_FETLQAQAGK_			0	0	0	P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.787838	1091.56112	1.7523	0.00095816	-0.12005	-6.5643E-05	1.6323	0.00089251	546.787900714433	4.9642	0.30147	4.9642	4.9199	5.2213	0	651	55	0.888155670855968	0.0365835629359025	0.888155670855968	360.231703932785	0	14.8381186370532						693	35	4	NaN	NaN	NaN	4.7882E-10	1	6498	125.98	101.13	1	700500		+	5876	39	5005	5131	5876	5876		
FEVAQVESLR	10	Unmodified	_FEVAQVESLR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.31422	1176.61389	1.3534	0.00079761	0.3773	0.00022235	1.7307	0.00102	589.314753224004	10.507	0.11533	10.507	10.454	10.569	0	579	31	0.936845902828289	0.0202510727946275	0.936845902828289	379.637640937781	0	8.20633305755166						142	14	2	NaN	NaN	NaN	0.0003231	1	8793	90.761	66.64	1	51162			5877	667	5006	5132	5877	5877		
FEVFCYALSPDDGTNFR	17	Unmodified	_FEVFCYALSPDDGTNFR_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.45419	2036.89383	0.74876	0.00076332	2.6307	0.0026818	3.3794	0.0034452	1019.95815771085	16.36	0.12413	16.36	16.289	16.413	0	189	40	1.1977968526266	0.0258640285956666	1.1977968526266	482.999520240476	0	10.4294091070611						302	15	4	NaN	NaN	NaN	0.002733	1	32276	50.641	50.166	1	52340			5878	161	5007	5133	5878	5878		
FEVGDIMLIR	10	Unmodified	_FEVGDIMLIR_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.823366	1191.63218	-0.61844	-0.0003691	-1.1092	-0.00066202	-1.7277	-0.0010311	596.823027735723	16.732	0.2394	16.732	16.67	16.91	0	615	55	0.912521036363781	0.0365126010715049	0.912521036363781	369.726482174479	0	14.7938239352828						865	28	5	NaN	NaN	NaN	3.8054E-07	1	9210	141.93	129.86	1	631850			5879	480	5008	5134	5879	5879		
FEVGDIMLIR	10	Oxidation (M)	_FEVGDIM(Oxidation (M))LIR_	FEVGDIM(1)LIR	FEVGDIM(54)LIR	0	1	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.820824	1207.62709	-0.075743	-4.5811E-05	-1.197	-0.00072396	-1.2727	-0.00076977	604.820521399949	14.701	0.097526	14.701	14.648	14.746	-1.7764E-15	606	52	0.918606045818476	0.0344578460236871	0.918606045818476	372.135517929254	0	13.95918134343						280	12	4	NaN	NaN	NaN	0.033148	1	9678	54.436	37.041	1	73062			5880	480	5008	5135	5880	5880	73	
FEVIEFDDGAGSVLR	15	Unmodified	_FEVIEFDDGAGSVLR_			0	0	0	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.409577	1652.8046	0.99295	0.00082157	-0.065947	-5.4565E-05	0.927	0.00076701	827.409711029225	15.686	0.097514	15.686	15.65	15.748	-1.7764E-15	396	37	1.05987478976334	0.0240972677801761	1.05987478976334	428.055537216327	0	9.73225234217733						199	12	3	NaN	NaN	NaN	4.2035E-05	1	23131	88.734	71.003	1	43087			5881	627	5009	5136	5881	5881		
FEVNNTILHPEIVECR	16	Unmodified	_FEVNNTILHPEIVECR_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.331525	1968.97275	0.70295	0.00046207	0.72802	0.00047855	1.431	0.00094062	657.332604014757	12.325	0.133	12.325	12.272	12.405	0	546	55	0.959108205975751	0.0363914316100816	0.959108205975751	580.259478718425	0	22.0167787162245						452	16	4	NaN	NaN	NaN	0.0014501	1	31095	49.487	45.18	1	126160			5882	672	5010	5137	5882	5882		
FEVNPVWK	8	Unmodified	_FEVNPVWK_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.77146	1017.52837	0.031232	1.5921E-05	-1.8538	-0.00094501	-1.8226	-0.00092909	509.770206132885	10.959	0.15963	10.959	10.915	11.075	0	705	40	0.851531465363931	0.0264820512722772	0.851531465363931	345.690161453718	0	10.7507296586235						252	19	2	NaN	NaN	NaN	0.0146	1	4678	51.456	34.909	1	98749			5883	741	5011	5138	5883	5883		
FEWELPLDEAQR	12	Unmodified	_FEWELPLDEAQR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.87263	1531.73071	1.213	0.0009302	-0.29834	-0.00022879	0.91464	0.00070141	766.872362772206	16.138	0.18622	16.138	16.041	16.227	0	444	37	1.02770517576159	0.0241572026210712	1.02770517576159	415.335701293923	0	9.76286675260417						444	22	4	NaN	NaN	NaN	6.9751E-05	1	19483	101.82	91.03	1	111530			5884	2726	5012	5139	5884	5884		
FEYGVDIVK	9	Unmodified	_FEYGVDIVK_			0	0	0		REV__Q9C0K3	REV__Q9C0K3			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.281857	1068.54916	0.5339	0.00028579	-9.6414	-0.0051609	-9.1075	-0.0048751	535.276443158844	13.584	0.17735	13.584	13.478	13.655	0	648	37	0.890187667287968	0.0243856529681402	0.890187667287968	361.152823776962	0	9.8933604145742						241	21	3	NaN	NaN	NaN	0.012363	1	5921	41.025	22.622	1	58558	+		5885	3513	5013	5140	5885	5885		
FFADLLDYIK	10	Unmodified	_FFADLLDYIK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.831714	1243.64888	0.83259	0.00051856	-0.74721	-0.00046539	0.085376	5.3175E-05	622.831380342342	19.392	0.13304	19.392	19.348	19.481	0	540	40	0.963152256458504	0.0262845144362098	0.963152256458504	390.053869843449	0	10.6446062956832						452	16	5	NaN	NaN	NaN	0.00040276	1	10740	88.181	72.599	1	358190			5886	481	5014	5141	5886	5886		
FFALPYVDHFLR	12	Unmodified	_FFALPYVDHFLR_			0	0	0	Q9HD33	Q9HD33	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.938117	1523.79252	-0.63874	-0.00032508	-0.076745	-3.9059E-05	-0.71549	-0.00036414	509.27236669343	17.779	0.16847	17.779	17.681	17.849	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	524.867594733458	0	11.1052539441021						300	20	3	NaN	NaN	NaN	0.023592	1	19243	25.857	21.61	1	65802			5887	2969	5015	5142	5887	5887		
FFAPWCGHCK	10	Unmodified	_FFAPWCGHCK_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.191683	1308.55322	-2.4421	-0.0010676	-0.80203	-0.00035064	-3.2441	-0.0014183	437.191627752262	8.9375	0.13316	8.9375	8.8842	9.0174	0	810	22	0.78005493425781	0.0143311421844247	0.78005493425781	473.59373552619	0	8.70084767547337						268	16	4	NaN	NaN	NaN	0.020802	1	12606	34.931	29.184	1	84064			5888	2294	5016	5143	5888	5888		
FFCFQVLEHQVK	12	Unmodified	_FFCFQVLEHQVK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.397761	1580.78097	2.1723	0.0017191	1.6632	0.0013163	3.8355	0.0030354	791.399004973144	13.504	0.13301	13.504	13.442	13.575	0	300	37	1.12400150285141	0.0239945682557239	1.12400150285141	454.126522129123	0	9.69444418385461						341	16	4	NaN	NaN	NaN	0.00060384	1	20999	94.804	81.006	1	87569			5889	209	5017	5144	5889	5889		
FFDANYDGK	9	Unmodified	_FFDANYDGK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.737814	1075.46108	1.2563	0.00067684	-0.4992	-0.00026894	0.75715	0.0004079	538.737533250369	7.2255	0.2394	7.2255	7.1368	7.3762	0	648	61	0.890187667287968	0.0406596895306061	0.890187667287968	361.123242050564	0	16.4944532974662						762	28	4	NaN	NaN	NaN	0.0016636	1	6089	84.368	64.135	1	362210			5890	1863	5018	5145	5890	5890		
FFDCDSLVCLCEFK	14	Unmodified	_FFDCDSLVCLCEFK_			0	0	0	Q9NWT1	Q9NWT1	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.391158	1838.76776	0.73864	0.00067984	1.2308	0.0011328	1.9694	0.0018126	920.392234587189	17.034	0.062074	17.034	16.998	17.06	0	291	25	1.12999890578964	0.0159897747860325	1.12999890578964	455.992911218924	0	6.45241682718523						150	8	3	NaN	NaN	NaN	2.1096E-11	1	28186	124.06	120.08	1	29665			5891	3083	5019	5146	5891	5891		
FFDDPMLLELAK	12	Unmodified	_FFDDPMLLELAK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.867971	1437.72139	0.72682	0.00052322	0.044089	3.1738E-05	0.77091	0.00055496	719.868117909682	18.169	0.21281	18.169	18.098	18.311	0	456	43	1.01965166402748	0.0281950841620375	1.01965166402748	412.322211094766	0	11.4014029043756						654	25	5	NaN	NaN	NaN	0.00056232	1	16611	75.474	65.224	1	375850			5892	1796	5020	5147	5892	5892		
FFDHSGTLVMDAYEPEISR	19	Unmodified	_FFDHSGTLVMDAYEPEISR_			0	0	0	Q15005	Q15005	Q15005	SPCS2	Signal peptidase complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.67725	2213.00992	1.0076	0.00074432	0.082366	6.0842E-05	1.09	0.00080516	739.011915336793	13.806	0.10638	13.806	13.762	13.868	0	546	58	0.959108205975751	0.0384371124263597	0.959108205975751	579.811794959172	0	23.2364721833468						560	13	5	NaN	NaN	NaN	2.1993E-11	1	34819	151.08	145.17	1	153480			5893	1787	5021	5148	5893	5893		
FFDIQLGIK	9	Unmodified	_FFDIQLGIK_			0	0	0	Q9UM22	Q9UM22	Q9UM22	EPDR1	Mammalian ependymin-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.808042	1079.60153	-1.0056	-0.00054385	-0.42196	-0.0002282	-1.4276	-0.00077205	540.807647119999	15.668	0.088652	15.668	15.642	15.73	0	678	28	0.869855008346864	0.0183108263146563	0.869855008346864	352.857757992274	0	7.42780929968399						153	11	3	NaN	NaN	NaN	0.0012706	1	6203	67.903	57.824	1	32609			5894	3285	5022	5149	5894	5894		
FFDTNTSVLMK	11	Unmodified	_FFDTNTSVLMK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.823563	1301.63257	0.77932	0.00050798	2.8412	0.0018519	3.6205	0.0023599	651.825493069365	12.201	0.15078	12.201	12.165	12.316	0	519	31	0.97729762293174	0.0201978857694813	0.97729762293174	395.588757840941	0	8.17566353900816						141	18	2	NaN	NaN	NaN	0.0036975	1	12394	63.397	34.296	1	49682			5895	1713	5023	5150	5895	5895		
FFEDLILK	8	Unmodified	_FFEDLILK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.789318	1023.56408	0.19916	0.00010213	-1.8734	-0.00096064	-1.6742	-0.00085851	512.788322248708	15.508	0.15075	15.508	15.464	15.615	-1.7764E-15	663	34	0.880024865079826	0.0223674774771112	0.880024865079826	357.229310335988	0	9.07965089415893						296	18	3	NaN	NaN	NaN	0.0051847	1	4837	58.286	43.751	1	107720			5896	2080	5024	5151	5896	5896		
FFEDYGLFMR	10	Unmodified	_FFEDYGLFMR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.805174	1323.59579	0.30426	0.00020166	-1.2733	-0.00084396	-0.96905	-0.00064229	662.804651664254	16.431	0.26598	16.431	16.369	16.635	0	549	49	0.957085760909907	0.0323568915973725	0.957085760909907	387.33993435079	0	13.095081735629						950	31	5	NaN	NaN	NaN	4.0555E-10	1	13087	150.24	138.89	1	634330			5897	1608	5025	5152	5897	5897		
FFEDYGLFMR	10	Oxidation (M)	_FFEDYGLFM(Oxidation (M))R_	FFEDYGLFM(1)R	FFEDYGLFM(63)R	0	1	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.802631	1339.59071	0.39213	0.00026304	1.2617	0.00084636	1.6538	0.0011094	670.803293331876	14.728	0.11528	14.728	14.684	14.799	0	519	31	0.97729762293174	0.0202006798599824	0.97729762293174	395.471022669195	0	8.17436094735922						248	14	4	NaN	NaN	NaN	0.031043	1	13573	62.969	49.794	1	105650			5898	1608	5025	5153	5898	5898	552	
FFEEGTEAVGLAFESTR	17	Unmodified	_FFEEGTEAVGLAFESTR_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.449431	1888.88431	1.5571	0.0014722	0.057672	5.4526E-05	1.6148	0.0015267	945.950496285942	15.845	0.14189	15.845	15.792	15.934	0	279	58	1.13799159301878	0.0379626683497278	1.13799159301878	459.127003437649	0	15.3161818319514						468	17	3	NaN	NaN	NaN	1.2892E-07	1	29342	108.91	108.03	1	107680		+	5899	22	5026	5154	5899	5899		
FFEEVNDPAK	10	Unmodified	_FFEEVNDPAK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.285128	1194.5557	1.2109	0.00072447	2.4404	0.00146	3.6513	0.0021845	598.287402506807	7.8552	0.37252	7.8552	7.5801	7.9527	0	618	85	0.910492137470517	0.056742338600892	0.910492137470517	368.894083351682	0	22.9896691294434						770	43	4	NaN	NaN	NaN	0.00043462	1	9279	67.507	41.284	1	262430			5900	1145	5027	5155	5900	5900		
FFEFGSLEQK	10	Unmodified	_FFEFGSLEQK_			0	0	0	Q14671	Q14671	Q14671	PUM1	Pumilio homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.303321	1230.59209	0.53805	0.0003316	0.67358	0.00041513	1.2116	0.00074673	616.303444832119	13.442	0.15076	13.442	13.371	13.522	0	558	34	0.951016745717027	0.0222561395374655	0.951016745717027	385.184131379061	0	9.01425954295519						221	18	3	NaN	NaN	NaN	0.0033403	1	10321	44.82	40.618	1	46133			5901	1762	5028	5156	5901	5901		
FFEHEVK	7	Unmodified	_FFEHEVK_			0	0	0	P61421	P61421	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.23471	934.454868	1.013	0.00047434	0.20337	9.5226E-05	1.2164	0.00056957	468.234646825072	3.9622	0.16858	3.9622	3.9268	4.0953	0	714	37	0.845418525735192	0.0244636567629751	0.845418525735192	343.61536954715	0	9.94310889008995						267	20	3	NaN	NaN	NaN	0.025025	1	2958	53.679	4.621	1	52077			5902	1344	5029	5157	5902	5902		
FFEHFIEGGR	10	Unmodified	_FFEHFIEGGR_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	413.536612	1237.58801	-1.5487	-0.00064045	-0.75002	-0.00031016	-2.2987	-0.00095061	413.536280464145	10.365	0.15956	10.365	10.321	10.48	0	819	31	0.773912161060781	0.0204801911124388	0.773912161060781	470.145224016929	0	12.4415463704166						277	19	4	NaN	NaN	NaN	0.017156	1	10547	40.502	24.045	1	88708			5903	2529	5030	5158	5903	5903		
FFEHFIEGGR	10	Unmodified	_FFEHFIEGGR_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.80128	1237.58801	1.321	0.00081875	2.1912	0.0013581	3.5122	0.0021769	619.802457379437	10.374	0.17733	10.374	10.321	10.498	0	555	34	0.953040030838688	0.0222592210224549	0.953040030838688	385.979397178929	0	9.01494211566222						241	21	2	NaN	NaN	NaN	0.0043715	1	10549	63.397	54.924	1	71738			5904	2529	5030	5158	5904	5904		
FFEILSPVYR	10	Unmodified	_FFEILSPVYR_			0	0	0	Q05397	Q05397	Q05397	PTK2	Focal adhesion kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.845156	1269.67576	0.24406	0.00015518	-1.7081	-0.0010861	-1.464	-0.0009309	635.844084659022	16.005	0.079787	16.005	15.97	16.049	0	588	67	0.93076847747433	0.0445462106400273	0.93076847747433	376.854362379939	0	18.03610050562						305	10	3	NaN	NaN	NaN	0.00071012	1	11505	76.605	50.148	1	72172			5905	1551	5031	5159	5905	5905		
FFEMIENHPLSTK	13	Unmodified	_FFEMIENHPLSTK_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.597431	1591.77046	-0.11948	-6.3516E-05	-0.053886	-2.8646E-05	-0.17337	-9.2162E-05	531.597966694946	11.208	0.13301	11.208	11.154	11.287	0	678	31	0.869855008346864	0.0203496003822382	0.869855008346864	527.132385598803	0	12.3318636928443						266	16	4	NaN	NaN	NaN	0.00027081	1	21323	54.27	45.796	1	65293			5906	407	5032	5160	5906	5906		
FFESFGDLSSADAILGNPK	19	Unmodified	_FFESFGDLSSADAILGNPK_			0	0	0	CON__Q3SX09	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.330067	2013.96837	0.21591	0.00014516	0.003418	2.298E-06	0.21933	0.00014746	672.664319756025	18.062	0.1064	18.062	18.027	18.133	0	525	37	0.973257487423603	0.0242441707123356	0.973257487423603	588.727782627819	0	14.6654066879131						340	13	4	NaN	NaN	NaN	0.025912	1	31868	55.604	55.494	1	108670		+	5907	40	5033	5161	5907	5907		
FFESFGDLSSADAILGNPK	19	Unmodified	_FFESFGDLSSADAILGNPK_			0	0	0	CON__Q3SX09	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.99146	2013.96837	-0.21663	-0.00021836	1.226	0.0012358	1.0094	0.0010174	1008.49400819881	18.062	0.070933	18.062	18.027	18.098	0	66	64	1.27913350869533	0.041574645421063	1.27913350869533	515.837459797178	0	16.7658491785142						314	9	4	NaN	NaN	NaN	0.0022308	1	31869	38.14	37.464	1	56829		+	5908	40	5033	5161	5908	5908		
FFESFGDLSSADAILGNPK	19	Unmodified	_FFESFGDLSSADAILGNPK_			0	0	0	CON__Q3SX09	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.99146	2013.96837	1.3859	0.0013969	-0.07376	-7.435E-05	1.3121	0.0013226	1008.49326504857	18.062	0.20395	18.062	18.009	18.213	0	192	124	1.1958073123591	0.0815713123858253	1.1958073123591	482.23442487834	0	32.8953456868787						2015	24	5	NaN	NaN	NaN	5.544E-15	1	31870	148.69	144.84	1	1172200		+	5909	40	5033	5161	5909	5909		
FFEVILIDPFHK	12	Unmodified	_FFEVILIDPFHK_			0	0	0	P61313	P61313	P61313	RPL15	60S ribosomal protein L15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.278139	1503.81259	-1.1966	-0.00060105	1.0691	0.00053701	-0.1275	-6.4038E-05	502.27840522674	18.585	0.13301	18.585	18.541	18.674	0	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	513.81752872557	0	12.3552231194213						327	16	4	NaN	NaN	NaN	0.023009	1	18636	40.386	31.913	1	138690			5910	1341	5034	5162	5910	5910		
FFEVILIDPFHK	12	Unmodified	_FFEVILIDPFHK_			0	0	0	P61313	P61313	P61313	RPL15	60S ribosomal protein L15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.91357	1503.81259	1.2483	0.00093989	0.058103	4.3747E-05	1.3064	0.00098363	752.913836567702	18.585	0.10641	18.585	18.55	18.656	0	351	31	1.08996939197032	0.0200423371753535	1.08996939197032	440.572334400327	0	8.10123599913385						288	13	4	NaN	NaN	NaN	3.2216E-05	1	18638	92.428	82.34	1	79166			5911	1341	5034	5162	5911	5911		
FFGDSAASMAIK	12	Unmodified	_FFGDSAASMAIK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.802631	1243.59071	1.4582	0.00090817	-0.44749	-0.0002787	1.0107	0.00062947	622.802720880359	11.314	0.15966	11.314	11.261	11.42	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.778124300412	0	9.83055625824483						431	19	4	NaN	NaN	NaN	0.005462	1	10728	45.939	38.789	1	202490			5912	3410	5035	5163	5912	5912		
FFGGYVPEMVLTPDDQR	17	Unmodified	_FFGGYVPEMVLTPDDQR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.969476	1969.9244	0.85537	0.00084337	2.7367	0.0026983	3.5921	0.0035417	986.473998838485	16.865	0.22168	16.865	16.785	17.007	0	222	61	1.17589687683038	0.0398482429728073	1.17589687683038	474.277688181079	0	16.0721003070977						1053	26	4	NaN	NaN	NaN	4.3707E-07	1	31107	102.03	96.413	1	293200			5913	1284	5036	5164	5913	5913		
FFGNSWAETYR	11	Unmodified	_FFGNSWAETYR_			0	0	0	O43488	O43488	O43488	AKR7A2	Aflatoxin B1 aldehyde reductase member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.314751	1376.61495	0.64679	0.00044584	3.2101	0.0022128	3.8569	0.0026586	689.31701728293	11.846	0.13305	11.846	11.775	11.908	0	483	34	1.00151498427745	0.0221823754430851	1.00151498427745	405.159435381557	0	8.97380353867203						227	16	4	NaN	NaN	NaN	2.1011E-07	1	14689	92.732	90.761	1	75437			5914	205	5037	5165	5914	5914		
FFGSLPDSWASGHSVPVVTVVR	22	Unmodified	_FFGSLPDSWASGHSVPVVTVVR_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.074332	2343.20117	-0.14359	-0.0001123	-1.3851	-0.0010833	-1.5287	-0.0011956	782.40757810884	15.934	0.097542	15.934	15.899	15.996	0	636	88	0.898312834727904	0.0588136641547994	0.898312834727904	542.870918321386	0	35.5424375955091						716	12	5	NaN	NaN	NaN	0.00018259	1	35987	63.025	60.12	1	191410			5915	2748	5038	5166	5915	5915		
FFGTAVTCLLSPHSQVLTAATQSLK	25	Unmodified	_FFGTAVTCLLSPHSQVLTAATQSLK_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	893.138784	2676.39452	0.64003	0.00057163	0.42175	0.00037669	1.0618	0.00094832	893.473482067726	17.929	0.079801	17.929	17.885	17.965	0	447	28	1.02569221487577	0.0181166496995924	1.02569221487577	619.39427690783	0	10.9402693887372						249	10	4	NaN	NaN	NaN	3.5925E-06	1	37535	51.785	49.471	1	48436			5916	1968	5039	5167	5916	5916		
FFGTEDHAWIK	11	Unmodified	_FFGTEDHAWIK_			0	0	0	Q49A26	Q49A26	Q49A26	GLYR1	Putative oxidoreductase GLYR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.887422	1349.64044	-1.8882	-0.00085138	-0.025143	-1.1336E-05	-1.9134	-0.00086272	450.887580883686	10.294	0.1064	10.294	10.259	10.365	0	801	19	0.78619514174348	0.0122778508671118	0.78619514174348	477.170005927078	0	7.45186768521529						138	13	3	NaN	NaN	NaN	0.029316	1	13877	23.053	15.406	1	29138			5917	1938	5040	5168	5917	5917		
FFGYCNDVDR	10	Unmodified	_FFGYCNDVDR_			0	0	0	Q9NRP2	Q9NRP2	Q9NRP2	CMC2	COX assembly mitochondrial protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.771862	1291.52917	1.4102	0.00091205	-0.12913	-8.352E-05	1.281	0.00082853	646.771453613313	9.0085	0.1064	9.0085	8.9642	9.0706	0	534	40	0.967195187796614	0.0262845144362098	0.967195187796614	391.53168666024	0	10.6402724084053						296	13	4	NaN	NaN	NaN	0.0094893	1	12111	44.82	32.754	1	82373			5918	3024	5041	5169	5918	5918		
FFIDQSK	7	Unmodified	_FFIDQSK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.729261	883.443968	-2.0249	-0.00089649	0.23107	0.0001023	-1.7939	-0.00079419	442.729639849723	7.5358	0.29268	7.5358	7.4649	7.7576	0	783	55	0.798467866007927	0.036802815446319	0.798467866007927	324.803952686474	0	14.9707964914352						563	34	4	NaN	NaN	NaN	0.0010558	1	2051	100.67	78.742	1	266180			5919	1608	5042	5170	5919	5919		
FFLEETLVR	9	Unmodified	_FFLEETLVR_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.316232	1152.61791	-0.018228	-1.0523E-05	0.4154	0.00023982	0.39718	0.0002293	577.316370080941	14.666	0.11529	14.666	14.631	14.746	0	603	31	0.920633820089869	0.0202791503902223	0.920633820089869	373.158014448618	0	8.21969313877872						233	14	3	NaN	NaN	NaN	0.010551	1	8138	37.722	28.959	1	65822			5920	3137	5043	5171	5920	5920		
FFLGDLCSR	9	Unmodified	_FFLGDLCSR_			0	0	0	Q15738	Q15738	Q15738	NSDHL	Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.771134	1113.52771	0.099645	5.5579E-05	-0.27423	-0.00015296	-0.17458	-9.7376E-05	557.771431025823	13.336	0.13303	13.336	13.283	13.416	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.377621439095	0	7.40541125620405						277	16	3	NaN	NaN	NaN	0.021448	1	7072	43.734	33.655	1	106180			5921	1865	5044	5172	5921	5921		
FFLLENVR	8	Unmodified	_FFLLENVR_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.292559	1036.57057	0.18594	9.6556E-05	-2.527	-0.0013123	-2.3411	-0.0012157	519.291068187501	14.595	0.17733	14.595	14.551	14.728	1.7764E-15	666	34	0.877991458330206	0.0223674774771112	0.877991458330206	356.344548936405	0	9.07813919691773						430	21	4	NaN	NaN	NaN	0.00069162	1	5159	96.51	56.307	1	147340			5922	849	5045	5173	5922	5922		
FFLQDPQSQELDVQVK	16	Unmodified	_FFLQDPQSQELDVQVK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.988723	1919.96289	1.5586	0.0014978	-0.32954	-0.00031669	1.2291	0.0011811	961.489547792973	14.125	0.16847	14.125	14.063	14.232	0	225	37	1.17390432875292	0.023905654272754	1.17390432875292	473.560229166803	0	9.64368802337935						290	20	3	NaN	NaN	NaN	1.8603E-08	1	30065	123.92	113.9	1	104260			5923	2726	5046	5174	5923	5923		
FFLQGIQLNTILPDAR	16	Unmodified	_FFLQGIQLNTILPDAR_			0	0	0	P11279	P11279	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.514711	1845.01487	1.4999	0.0013852	-1.4316	-0.0013221	0.068342	6.3115E-05	924.015742144578	19.516	0.088643	19.516	19.472	19.561	0	267	64	1.14597988355104	0.0419068387671679	1.14597988355104	462.430064283327	0	16.9104034225828						285	11	3	NaN	NaN	NaN	0.0001698	1	28369	73.891	65.523	1	77010			5924	649	5047	5175	5924	5924		
FFLSLYGHK	9	Unmodified	_FFLSLYGHK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	371.202682	1110.58622	-2.0958	-0.00077796	0.16189	6.0096E-05	-1.9339	-0.00071787	371.20262416098	11.722	0.044342	11.722	11.695	11.74	-1.7764E-15	885	19	0.728786607772777	0.012325854453324	0.728786607772777	443.288939151846	0	7.49727682490237						64	6	3	NaN	NaN	NaN	0.069849	1	7003	18.403	13.496	1	11969			5925	3308	5048	5176	5925	5925		
FFLSSGLIDK	10	Unmodified	_FFLSSGLIDK_			0	0	0	Q9BTV4	Q9BTV4	Q9BTV4	TMEM43	Transmembrane protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.810782	1125.60701	0.61981	0.00034945	-0.096079	-5.4171E-05	0.52373	0.00029528	563.810470471138	14.054	0.14187	14.054	14.01	14.152	0	600	40	0.922661313351899	0.0263574177216448	0.922661313351899	374.085897483073	0	10.6864112768725						435	17	4	NaN	NaN	NaN	0.0023023	1	7414	90.761	71.274	1	154580			5926	2738	5049	5177	5926	5926		
FFMGNQVLK	9	Unmodified	_FFMGNQVLK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.28642	1082.55829	1.2904	0.00069979	-0.44493	-0.00024128	0.84552	0.00045851	542.28637896813	10.968	0.25717	10.968	10.853	11.11	0	612	55	0.914549654013882	0.0365277897935211	0.914549654013882	370.975429486847	0	14.8170331128365						810	30	4	NaN	NaN	NaN	0.011987	1	6273	53.679	38.181	1	304240			5927	674	5050	5178	5927	5927		
FFNEVFK	7	Unmodified	_FFNEVFK_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.739628	929.464704	-1.0403	-0.0004845	0.45639	0.00021256	-0.58389	-0.00027194	465.739393979854	11.216	0.1064	11.216	11.181	11.287	0	723	25	0.839303037468863	0.0163113695706084	0.839303037468863	341.156303240646	0	6.63017562796227						134	13	2	NaN	NaN	NaN	0.06995	1	2863	33.813	23.734	1	29126			5928	826	5051	5179	5928	5928		
FFPEDVSEELIQEITQR	17	Unmodified	_FFPEDVSEELIQEITQR_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.012627	2079.01605	0.15395	0.00010684	-0.52966	-0.00036759	-0.37572	-0.00026075	694.346477395834	20.049	0.088664	20.049	20.04	20.128	0	540	52	0.963152256458504	0.0343910976262953	0.963152256458504	582.490400848639	0	20.7988758865857						328	11	5	NaN	NaN	NaN	0.0010264	1	33008	82.437	73.281	1	63951			5929	962	5052	5180	5929	5929		
FFPEDVSEELIQEITQR	17	Unmodified	_FFPEDVSEELIQEITQR_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.5153	2079.01605	0.94471	0.00098298	0.7952	0.00082741	1.7399	0.0018104	1041.01818858018	20.049	0.097526	20.049	20.031	20.128	0	183	43	1.20177511391933	0.0278478353457612	1.20177511391933	484.537244701862	0	11.2278189596893						263	12	3	NaN	NaN	NaN	0.00017364	1	33009	40.83	35.748	1	52157			5930	962	5052	5180	5930	5930		
FFPLESWQIGK	11	Unmodified	_FFPLESWQIGK_			0	0	0	P30046	P30046	P30046	DDT	D-dopachrome decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.355888	1350.69722	0.81698	0.00055257	-1.8758	-0.0012687	-1.0588	-0.00071615	676.354615854614	16.537	0.56753	16.537	16.369	16.936	0	519	55	0.97729762293174	0.0363562041234198	0.97729762293174	395.437827385195	0	14.7105835860014						1498	65	5	NaN	NaN	NaN	0.00031741	1	13907	78.816	66.749	1	957750			5931	896	5053	5181	5931	5931		
FFQEENTEK	9	Unmodified	_FFQEENTEK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.266936	1170.51932	1.8754	0.0010995	-0.11467	-6.7227E-05	1.7607	0.0010323	586.266815641137	4.4056	0.24826	4.4056	4.3435	4.5918	0	639	34	0.896281965493857	0.0223395647977513	0.896281965493857	363.221850354987	0	9.0531979604134						539	29	4	NaN	NaN	NaN	6.7758E-06	1	8617	113.7	97.241	1	145140			5932	64	5054	5182	5932	5932		
FFQPTEMAAQDFFQR	15	Unmodified	_FFQPTEMAAQDFFQR_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.930154	1861.84575	1.1392	0.0010617	1.419	0.0013225	2.5583	0.0023842	932.433037677448	16.413	0.27486	16.413	16.236	16.51	0	273	64	1.14198628764525	0.0419241293629249	1.14198628764525	460.787457985578	0	16.916239018276						722	32	5	NaN	NaN	NaN	8.8236E-05	1	28733	53.051	51.341	1	198770			5933	452	5055	5183	5933	5933		
FFQPTEMASQDFFQR	15	Unmodified	_FFQPTEMASQDFFQR_			0	0	0	O94973	O94973	O94973	AP2A2	AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.927611	1877.84067	2.1273	0.0019995	3.3655	0.0031633	5.4928	0.0051628	940.433105022961	15.482	0.20408	15.482	15.367	15.571	0	282	31	1.13599383354359	0.0199817200584811	1.13599383354359	458.340641709815	0	8.06204587000394						453	24	4	NaN	NaN	NaN	1.7782E-05	1	29092	65.408	12.57	1	102260			5934	399	5056	5184	5934	5934		
FFQTACDVPELQDK	14	Unmodified	_FFQTACDVPELQDK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.395612	1696.77667	2.7506	0.0023363	-1.2108	-0.0010284	1.5398	0.0013079	849.896603855742	11.323	0.2927	11.323	11.234	11.527	0	333	67	1.10198982404297	0.0440870870026808	1.10198982404297	444.968799159452	0	17.8017779602076						1279	34	5	NaN	NaN	NaN	2.4549E-17	1	24395	178.52	158.34	1	567840			5935	1095	5057	5185	5935	5935		
FFSHFCHDQK	10	Unmodified	_FFSHFCHDQK_			0	0	0	Q15031	Q15031	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.532873	1351.57679	0.077416	3.4956E-05	0.024832	1.1212E-05	0.10225	4.6168E-05	451.532934481735	4.0066	0.088652	4.0066	3.98	4.0686	0	849	19	0.753417699604308	0.0123052470762522	0.753417699604308	457.269570115311	0	7.46838711603903						120	11	4	NaN	NaN	NaN	0.013711	1	13921	25.857	13.261	1	22727			5936	1797	5058	5186	5936	5936		
FFSTLYENCFHILGK	15	Unmodified	_FFSTLYENCFHILGK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.97479	1874.90254	0.24777	0.0001551	-1.64	-0.0010266	-1.3922	-0.00087147	626.308063754094	15.508	0.088695	15.508	15.473	15.562	0	660	52	0.882057989648486	0.0345679267286869	0.882057989648486	533.831363726279	0	20.9208959992743						354	11	4	NaN	NaN	NaN	0.00022988	1	29038	52.837	49.753	1	80766			5937	2947	5059	5187	5937	5937		
FFSTLYENCFHILGK	15	Unmodified	_FFSTLYENCFHILGK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.458547	1874.90254	1.7739	0.0016648	0.85096	0.00079859	2.6249	0.0024634	938.961278082223	15.5	0.070949	15.5	15.473	15.544	0	189	34	1.1977968526266	0.0218849460359061	1.1977968526266	483.281934550852	0	8.83004412190655						205	9	4	NaN	NaN	NaN	3.838E-05	1	29039	89.382	85.878	1	43336			5938	2947	5059	5187	5938	5938		
FFTDDLFQYAGEK	13	Unmodified	_FFTDDLFQYAGEK_			0	0	0	Q6NYC1	Q6NYC1	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.867014	1579.71947	0.94459	0.00074704	2.1408	0.0016931	3.0854	0.0024402	790.868449226374	16.661	0.10641	16.661	16.617	16.723	0	393	40	1.0618830335572	0.0261035740601534	1.0618830335572	429.031509062727	0	10.546600159381						389	13	4	NaN	NaN	NaN	8.5532E-09	1	20956	125.17	116.7	1	130220			5939	2050	5060	5188	5939	5939		
FFTGQITAAGK	11	Unmodified	_FFTGQITAAGK_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.806031	1139.59751	0.65303	0.00037275	-1.3424	-0.00076623	-0.68933	-0.00039348	570.805116422022	8.3963	0.11527	8.3963	8.3608	8.4761	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	364.983061553495	0	7.40847450560256						183	14	3	NaN	NaN	NaN	0.00018388	1	7783	85.716	76.202	1	41757			5940	1664	5061	5189	5940	5940		
FFVADTANEALEAAK	15	Unmodified	_FFVADTANEALEAAK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.898845	1595.78314	2.2415	0.0017907	2.7628	0.0022072	5.0043	0.0039979	798.901896466995	13.54	0.22168	13.54	13.46	13.682	0	375	46	1.07392668217569	0.030094602206975	1.07392668217569	433.859531449913	0	12.158027386225						796	26	4	NaN	NaN	NaN	4.7405E-08	1	21451	104.04	91.446	1	337670			5941	2557	5062	5190	5941	5941		
FFVGGNWK	8	Unmodified	_FFVGGNWK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.745245	953.475937	-0.95807	-0.00045771	0.35092	0.00016765	-0.60715	-0.00029006	477.745338533143	10.658	0.31919	10.658	10.569	10.888	0	777	76	0.802556497112065	0.0510688329971924	0.802556497112065	326.100033532437	0	20.7506240529774						1037	37	4	NaN	NaN	NaN	0.0032577	1	3309	96.666	56.905	1	1039100			5942	1303	5063	5191	5942	5942		
FFVLCGDLIHAMPGK	15	Unmodified	_FFVLCGDLIHAMPGK_			0	0	0	Q9BRF8	Q9BRF8	Q9BRF8	CPPED1	Serine/threonine-protein phosphatase CPPED1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.958195	1703.85275	0.0012563	7.1481E-07	-2.4198	-0.0013768	-2.4185	-0.001376	568.956744256149	15.544	0.088676	15.544	15.517	15.606	0	696	22	0.857641857947968	0.0142536233772099	0.857641857947968	519.436572733021	0	8.63280308379547						169	11	3	NaN	NaN	NaN	0.00015442	1	24601	57.293	53.788	1	46966			5943	2705	5064	5192	5943	5943		
FFWGNAETLK	10	Unmodified	_FFWGNAETLK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.806031	1211.59751	1.0861	0.00065904	-1.3916	-0.00084443	-0.30551	-0.00018538	606.804991317419	12.972	0.18619	12.972	12.901	13.088	0	564	58	0.946969335010767	0.0384743858858818	0.946969335010767	383.611536753116	0	15.5857404771694						495	22	3	NaN	NaN	NaN	0.0069463	1	9779	60.892	47.244	1	160380			5944	240	5065	5193	5944	5944		
FGANAILGVSLAVCK	15	Unmodified	_FGANAILGVSLAVCK_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.281555	1518.82283	-0.72858	-0.00036959	-0.57202	-0.00029017	-1.3006	-0.00065977	507.28114755033	15.801	0.22173	15.801	15.748	15.97	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	523.649084087316	0	11.1071229022184						369	26	4	NaN	NaN	NaN	0.033011	1	19105	42.061	41.658	1	79903			5945	544;596;688	5066	5194	5945	5945		
FGANAILGVSLAVCK	15	Unmodified	_FGANAILGVSLAVCK_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.418694	1518.82283	2.0078	0.0015268	-0.057496	-4.3721E-05	1.9503	0.0014831	760.41866033398	15.792	0.47886	15.792	15.704	16.182	0	282	187	1.13599383354359	0.124228805603021	1.13599383354359	459.134310795275	0	50.2095217044805						3782	55	5	NaN	NaN	NaN	3.4226E-06	1	19107	130.99	126.46	1	1614900			5946	544;596;688	5066	5194	5946	5946		
FGAPPHAGGGIGLER	15	Unmodified	_FGAPPHAGGGIGLER_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.252875	1434.7368	-0.65539	-0.0003141	-1.1999	-0.00057506	-1.8553	-0.00088916	479.252334553181	6.8885	0.27493	6.8885	6.8353	7.1102	0	855	34	0.749315378969369	0.022567485025674	0.749315378969369	454.513207694834	0	13.6887888551444						643	32	4	NaN	NaN	NaN	0.012207	1	16535	31.801	26.305	1	168950			5947	705	5067	5195	5947	5947		
FGAQQDTIEVPEK	13	Unmodified	_FGAQQDTIEVPEK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.364638	1460.71472	1.902	0.0013911	-0.58635	-0.00042884	1.3157	0.00096225	731.364111088884	7.9438	0.27502	7.9438	7.8463	8.1213	0	462	52	1.01562323939346	0.0342581813626666	1.01562323939346	410.631604112565	0	13.8510930247443						827	32	3	NaN	NaN	NaN	1.1069E-16	1	17288	172.51	133.47	1	332210			5948	1144	5068	5196	5948	5948		
FGATLEIVTDK	11	Unmodified	_FGATLEIVTDK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.324254	1192.63395	1.0004	0.00059757	-2.0963	-0.0012522	-1.0959	-0.00065459	597.322885755937	11.296	0.23061	11.296	11.243	11.474	0	594	64	0.926715457081489	0.0425361068960246	0.926715457081489	375.474035101259	0	17.2342044925495						564	27	3	NaN	NaN	NaN	0.00038012	1	9240	65.933	57.459	1	216260			5949	1392	5069	5197	5949	5949		
FGAVFLWDSGSSVGEITGHNK	21	Unmodified	_FGAVFLWDSGSSVGEITGHNK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.695521	2207.06473	0.98304	0.0007242	0.11149	8.2138E-05	1.0945	0.00080634	737.029888678249	15.473	0.15975	15.473	15.429	15.588	0	498	34	0.991429299781895	0.0221946439688537	0.991429299781895	599.36100007798	0	13.4176022520953						464	19	5	NaN	NaN	NaN	5.3673E-17	1	34752	133.47	125.1	1	140170			5950	300	5070	5198	5950	5950		
FGAVWTGDNTAEWDHLK	17	Unmodified	_FGAVWTGDNTAEWDHLK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.639235	1945.89588	2.4005	0.0015594	-1.5982	-0.0010382	0.80229	0.0005212	649.972807718403	12.884	0.24829	12.884	12.83	13.079	0	582	52	0.934820374997243	0.0344339850202118	0.934820374997243	565.61227301312	0	20.8342533572176						965	29	6	NaN	NaN	NaN	2.665E-14	1	30637	178.52	164.75	1	890670			5951	1771	5071	5199	5951	5951		
FGAVWTGDNTAEWDHLK	17	Unmodified	_FGAVWTGDNTAEWDHLK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.955214	1945.89588	3.3293	0.0032426	-0.58791	-0.0005726	2.7414	0.00267	974.455718783266	12.884	0.13302	12.884	12.83	12.963	0	180	127	1.203763835057	0.0835895506625481	1.203763835057	485.559298702247	0	33.7173143240518						1282	16	4	NaN	NaN	NaN	5.1732E-14	1	30639	121.86	108.09	1	341300			5952	1771	5071	5199	5952	5952		
FGAYIVDGLR	10	Unmodified	_FGAYIVDGLR_			0	0	0	Q13085;O00763	Q13085	Q13085	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.800749	1109.58694	-0.26003	-0.00014452	-0.53362	-0.00029659	-0.79365	-0.00044111	555.800350215528	12.405	0.13298	12.405	12.361	12.493	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	354.387536920609	0	9.8983123692604						315	16	3	NaN	NaN	NaN	0.00078477	1	6982	96.311	55.286	1	106670			5953	1625	5072	5200	5953	5953		
FGDLTDNFSSPHAR	14	Unmodified	_FGDLTDNFSSPHAR_			0	0	0	P78563	P78563	P78563	ADARB1	Double-stranded RNA-specific editase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.911066	1562.71137	0.0093079	4.8579E-06	2.0565	0.0010733	2.0658	0.0010782	521.912099042282	8.3342	0.15078	8.3342	8.2898	8.4406	0	714	22	0.845418525735192	0.0142655083494234	0.845418525735192	512.405922851383	0	8.64628671860925						125	18	2	NaN	NaN	NaN	0.00019251	1	20429	96.957	89.817	1	37098			5954	1466	5073	5201	5954	5954		
FGDPECQVILPLLK	14	Unmodified	_FGDPECQVILPLLK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.939459	1627.86436	1.4981	0.0012209	0.38707	0.00031544	1.8852	0.0015363	814.94005136216	17.353	0.33697	17.353	17.238	17.575	0	381	109	1.06991323971056	0.0721525162275298	1.06991323971056	432.164832239648	0	29.1442136743482						2436	39	5	NaN	NaN	NaN	4.1584E-12	1	22415	183.08	173.34	1	1184900			5955	801	5074	5202	5955	5955		
FGDPVVQSDMK	11	Unmodified	_FGDPVVQSDMK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.792263	1221.56997	2.0729	0.0012682	1.1323	0.00069276	3.2053	0.0019609	611.793026033203	7.394	0.48776	7.394	7.3053	7.7931	0	576	70	0.938871150116794	0.0465936234393901	0.938871150116794	380.296030372096	0	18.8730583876691						1565	56	6	NaN	NaN	NaN	1.1944E-07	1	10057	123.42	91.279	1	2439900			5956	618	5075	5203	5956	5956		
FGDSNTVMR	9	Unmodified	_FGDSNTVMR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.737291	1025.46003	0.67566	0.00034711	1.3651	0.00070132	2.0408	0.0010484	513.737914214143	4.8046	0.19508	4.8046	4.7603	4.9553	0	714	40	0.845418525735192	0.0264930907704451	0.845418525735192	343.173093374743	0	10.7541006448199						267	23	3	NaN	NaN	NaN	0.0022211	1	4869	79.809	67.257	1	92030			5957	718	5076	5204	5957	5957		
FGELVMTK	8	Unmodified	_FGELVMTK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.746596	923.478639	-0.85687	-0.00039651	0.60338	0.00027921	-0.25349	-0.0001173	462.747513968358	8.5116	0.29265	8.5116	8.3164	8.6091	0	765	79	0.810730346695089	0.0530635993560031	0.810730346695089	329.573311356526	0	21.5711009505744						658	34	4	NaN	NaN	NaN	0.016799	1	2765	51.864	37.329	1	215300			5958	1026	5077	5205	5958	5958		
FGEMQLDFR	9	Unmodified	_FGEMQLDFR_			0	0	0	Q8TCJ2	Q8TCJ2	Q8TCJ2	STT3B	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.768591	1141.52263	0.14838	8.4837E-05	-0.3186	-0.00018217	-0.17022	-9.7328E-05	571.768848495629	12.653	0.133	12.653	12.573	12.706	0	642	28	0.894250814548268	0.0182778248645526	0.894250814548268	362.505914844459	0	7.40935262914854						177	16	3	NaN	NaN	NaN	0.032272	1	7824	40.502	33.352	1	38770			5959	2344	5078	5206	5959	5959		
FGEPVLAGFAR	11	Unmodified	_FGEPVLAGFAR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.314023	1162.61349	0.37363	0.00021757	0.060807	3.5409E-05	0.43443	0.00025298	582.314538738791	13.185	0.31922	13.185	13.034	13.354	1.7764E-15	618	94	0.910492137470517	0.062826240481894	0.910492137470517	369.009800132567	0	25.4626014758475						1099	37	4	NaN	NaN	NaN	4.4007E-05	1	8416	111.39	100.69	1	411370			5960	141	5079	5207	5960	5960		
FGESTTGFNFSFK	13	Unmodified	_FGESTTGFNFSFK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.840799	1467.66705	0.97117	0.00071366	-0.66934	-0.00049186	0.30183	0.0002218	734.840049977283	14.409	0.097535	14.409	14.365	14.462	0	468	28	1.01159370163332	0.0181341741775967	1.01159370163332	408.984223060301	0	7.33159085993674						219	12	3	NaN	NaN	NaN	0.0069619	1	17503	48.701	43.205	1	60556			5961	1151	5080	5208	5961	5961		
FGEVISYQQLAALAGNPK	18	Unmodified	_FGEVISYQQLAALAGNPK_			0	0	0	P16455	P16455	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.507083	1904.99961	0.51535	0.00049139	0.065778	6.272E-05	0.58113	0.00055411	954.008985818214	16.777	0.097501	16.777	16.732	16.83	0	216	28	1.17988115188462	0.0179255454970533	1.17988115188462	475.998140345779	0	7.23168287556081						184	12	3	NaN	NaN	NaN	1.5258E-07	1	29707	92.747	78.385	1	51463			5962	729	5081	5209	5962	5962		
FGEVLEISGK	10	Unmodified	_FGEVLEISGK_			0	0	0	Q9H2J4	Q9H2J4	Q9H2J4	PDCL3	Phosducin-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.792589	1077.57063	0.21684	0.00011705	-1.4955	-0.00080727	-1.2787	-0.00069023	539.792160407962	10.374	0.15072	10.374	10.312	10.463	1.7764E-15	699	34	0.85560534332665	0.0224016640756647	0.85560534332665	347.085610108235	0	9.08747859487522						223	18	3	NaN	NaN	NaN	0.0011811	1	6153	81.163	65.582	1	55091			5963	2869	5082	5210	5963	5963		
FGEVTSASNCTDFQSR	16	Unmodified	_FGEVTSASNCTDFQSR_			0	0	0	Q9NP81	Q9NP81	Q9NP81	SARS2	Serine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.39159	1804.76863	2.2963	0.0020745	0.80868	0.00073055	3.105	0.002805	903.39202969916	7.4649	0.079803	7.4649	7.4294	7.5092	0	354	34	1.08796502040166	0.0220511287712513	1.08796502040166	439.092728774058	0	8.89963383302734						174	10	5	NaN	NaN	NaN	0.0030953	1	27343	50.314	49.262	1	28114			5964	2980	5083	5211	5964	5964		
FGEVVDCTLK	10	Unmodified	_FGEVVDCTLK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.289356	1166.56416	1.4351	0.0008385	0.86216	0.00050375	2.2972	0.0013423	584.290004522518	8.6268	0.43488	8.6268	8.5559	8.9908	0	603	61	0.920633820089869	0.0405358392902467	0.920633820089869	373.105264755303	0	16.4279594345009						1186	50	5	NaN	NaN	NaN	0.00040087	1	8505	78.816	0	1	937350			5965	1717	5084	5212	5965	5965		
FGEVVDCTLK	10	Unmodified	_FGEVVDCTLK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.289356	1166.56416	1.6763	0.00097943	3.3964	0.0019845	5.0727	0.0029639	584.289868141751	8.21	0.30159	8.21	8.139	8.4406	0	603	58	0.920633820089869	0.0385223886252621	0.920633820089869	373.105253687416	0	15.6119678280672						1090	35	5	NaN	NaN	NaN	0.0038918	1	8507	74.269	0	1	1475200			5966	1717	5084	5212	5966	5966		
FGFAIGSQTTK	11	Unmodified	_FGFAIGSQTTK_			0	0	0	Q8WW12	Q8WW12	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.803488	1155.59242	0.80513	0.00046601	3.6324	0.0021025	4.4376	0.0025685	578.805745575269	9.9396	0.15073	9.9396	9.8686	10.019	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	382.179891334182	0	9.84694754891166						307	18	3	NaN	NaN	NaN	5.1546E-05	1	8217	119.07	81.345	1	100880			5967	2386	5085	5213	5967	5967		
FGFEIIETK	9	Unmodified	_FGFEIIETK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.289682	1082.56481	-0.15972	-8.6616E-05	-6.3048	-0.003419	-6.4645	-0.0035056	542.285612955411	13.691	0.29258	13.691	13.637	13.93	0	681	46	0.867820189810857	0.0305307631752075	0.867820189810857	352.020216272829	0	12.3844155530116						488	34	4	NaN	NaN	NaN	0.0005795	1	6272	106.93	79.19	1	215420			5968	2836	5086	5214	5968	5968		
FGFGFGGTGK	10	Unmodified	_FGFGFGGTGK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.74016	973.465767	-0.29252	-0.00014267	-0.92166	-0.00044953	-1.2142	-0.00059221	487.739572550117	11.048	0.17736	11.048	10.986	11.163	0	750	52	0.820941264895493	0.0346978263217897	0.820941264895493	333.47289464791	0	14.0945340139414						585	21	4	NaN	NaN	NaN	3.7169E-05	1	3697	86.205	32.327	1	226350			5969	2404	5087	5215	5969	5969		
FGFPEGSVELYAEK	14	Unmodified	_FGFPEGSVELYAEK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.882664	1571.75077	1.9098	0.0015028	1.3276	0.0010447	3.2375	0.0025475	786.883801408629	13.966	0.35468	13.966	13.868	14.223	0	387	67	1.06589869032374	0.0441722496359709	1.06589869032374	430.672927124364	0	17.8476549611049						1384	41	5	NaN	NaN	NaN	2.8559E-07	1	20708	145.95	132.77	1	700800			5970	819	5088	5216	5970	5970		
FGFVDAQK	8	Unmodified	_FGFVDAQK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.23471	910.454868	-0.81636	-0.00037245	1.5414	0.00070325	0.72507	0.0003308	456.235277166301	7.5624	0.1862	7.5624	7.5003	7.6865	0	732	34	0.833184998970724	0.0224390480115776	0.833184998970724	338.772446335746	0	9.12370145612107						357	22	3	NaN	NaN	NaN	0.018291	1	2515	44.767	31.214	1	140130			5971	2064	5089	5217	5971	5971		
FGFYEVFK	8	Unmodified	_FGFYEVFK_			0	0	0	Q00325	Q00325	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.760561	1035.50657	0.38836	0.00020147	-0.52459	-0.00027214	-0.13623	-7.0671E-05	518.760205782222	14.959	0.31924	14.959	14.897	15.216	0	669	49	0.875957769340875	0.0325458093400007	0.875957769340875	355.523927604146	0	13.2093285413969						982	37	5	NaN	NaN	NaN	0.011762	1	5125	65.313	51.665	1	1231900			5972	1497	5090	5218	5972	5972		
FGGEHVPNSPFQVTALAGDQPSVQPPLR	28	Unmodified	_FGGEHVPNSPFQVTALAGDQPSVQPPLR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	982.501661	2944.48315	1.0922	0.0010731	1.2494	0.0012276	2.3416	0.0023007	982.836851533297	14.719	0.11529	14.719	14.631	14.746	-1.7764E-15	396	58	1.05987478976334	0.0381671761516003	1.05987478976334	639.735185532234	0	23.0375189148875						448	14	4	NaN	NaN	NaN	2.8809E-10	1	38140	69.712	69.334	1	83330			5973	792	5091	5219	5973	5973		
FGGGNPELLTQMVSK	15	Unmodified	_FGGGNPELLTQMVSK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.40324	1576.79193	1.9372	0.0015293	0.63542	0.00050161	2.5727	0.0020309	789.403833677782	13.318	0.29262	13.318	13.203	13.496	0	393	85	1.0618830335572	0.0562580332957809	1.0618830335572	429.038436791256	0	22.7302423142748						1470	34	4	NaN	NaN	NaN	4.5894E-06	1	20877	106.97	92.516	1	797580			5974	1026	5092	5220	5974	5974		
FGHEFLEFEFRPDGK	15	Unmodified	_FGHEFLEFEFRPDGK_			0	0	1	P61326;Q96A72	P61326	P61326	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	464.475697	1853.87368	-2.0947	-0.00097294	0.4325	0.00020089	-1.6622	-0.00077206	464.726769653699	13.061	0.12413	13.061	13.008	13.132	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	649.322281495175	0	13.1946281987294						284	15	4	NaN	NaN	NaN	0.058846	1	28569	14.975	14.093	1	105370			5975	1342	5093	5221	5975	5975		
FGHEFLEFEFRPDGK	15	Unmodified	_FGHEFLEFEFRPDGK_			0	0	1	P61326;Q96A72	P61326	P61326	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.965171	1853.87368	0.24177	0.00014965	-0.16701	-0.00010337	0.074764	4.6276E-05	618.965175712757	13.061	0.19502	13.061	12.99	13.185	0	621	49	0.908462957275599	0.0324826533406289	0.908462957275599	549.857695960914	0	19.6605010490889						534	23	5	NaN	NaN	NaN	2.1883E-06	1	28570	138	121.01	1	176610			5976	1342	5093	5221	5976	5976		
FGIDDQDYLVSLTR	14	Unmodified	_FGIDDQDYLVSLTR_			0	0	0	Q8TBX8	Q8TBX8	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.409577	1640.8046	1.1888	0.00097652	0.68659	0.00056397	1.8754	0.0015405	821.913457657392	16.2	0.19507	16.2	16.156	16.351	0	360	34	1.08395544855938	0.0220632885593353	1.08395544855938	437.807694095168	0	8.91132334004743						343	23	4	NaN	NaN	NaN	1.2639E-05	1	22773	69.641	59.898	1	72573			5977	2338	5094	5222	5977	5977		
FGIEPNAELIYEVTLK	16	Unmodified	_FGIEPNAELIYEVTLK_			0	0	0	Q13451	Q13451	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.49311	1834.97167	1.4875	0.0013663	-2.6163	-0.002403	-1.1288	-0.0010368	918.991297831005	18.408	0.1064	18.408	18.373	18.479	0	261	25	1.14997238118939	0.0159677958301987	1.14997238118939	464.060087213529	0	6.44364755778383						174	13	4	NaN	NaN	NaN	0.050192	1	28109	24.164	23.069	1	38028			5978	1670	5095	5223	5978	5978		
FGIQAQMVTTDFQK	14	Unmodified	_FGIQAQMVTTDFQK_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.40324	1612.79193	3.1356	0.0025317	-0.66443	-0.00053646	2.4712	0.0019952	807.903982726271	12.839	0.30149	12.839	12.742	13.043	0	366	52	1.07994477139643	0.0341025169247675	1.07994477139643	436.25122133454	0	13.7759495235803						834	35	5	NaN	NaN	NaN	1.6246E-05	1	21971	112.73	100.71	1	357640			5979	1142	5096	5224	5979	5979		
FGIVTSSAGTGTTEDTEAK	19	Unmodified	_FGIVTSSAGTGTTEDTEAK_			0	0	0	P82979	P82979	P82979	SARNP	SAP domain-containing ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.447085	1870.87962	3.6051	0.003376	-2.2515	-0.0021084	1.3536	0.0012676	936.44502947994	7.7309	0.22179	7.7309	7.6865	7.9083	-8.8818E-16	279	76	1.13799159301878	0.0499508950067746	1.13799159301878	459.159227184554	0	20.1542915511757						1147	26	4	NaN	NaN	NaN	6.5621E-28	1	28957	211.15	182.02	1	435880			5980	1480	5097	5225	5980	5980		
FGIYDIDNK	9	Unmodified	_FGIYDIDNK_			0	0	0	Q99829	Q99829	Q99829	CPNE1	Copine-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.769114	1083.52368	0.59821	0.00032469	0.018488	1.0035E-05	0.6167	0.00033472	542.768894842108	10.72	0.14189	10.72	10.658	10.8	0	660	37	0.882057989648486	0.0243991920216602	0.882057989648486	357.791591338895	0	9.89711089663393						354	17	3	NaN	NaN	NaN	0.014168	1	6295	60.589	54.359	1	189610			5981	2678	5098	5226	5981	5981		
FGLALAVAGGVVNSALYNVDAGHR	24	Unmodified	_FGLALAVAGGVVNSALYNVDAGHR_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	791.088752	2370.24443	1.3046	0.0010321	-4.0717	-0.0032211	-2.7671	-0.002189	791.418587570008	18.727	0.10639	18.727	18.683	18.789	0	354	46	1.08796502040166	0.0300821596276293	1.08796502040166	657.437866413455	0	18.1781127810489						289	13	5	NaN	NaN	NaN	0.017774	1	36213	39.483	36.578	1	79412			5982	960	5099	5227	5982	5982		
FGLESHAHTIQICK	14	Unmodified	_FGLESHAHTIQICK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.611963	1639.81406	0.048396	2.6502E-05	0.56483	0.00030931	0.61323	0.00033581	547.612385681877	7.0037	0.12423	7.0037	6.9683	7.0925	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	523.300429805968	0	11.0997275948055						268	15	4	NaN	NaN	NaN	2.278E-05	1	22754	108.2	100.19	1	99604			5983	2308	5100	5228	5983	5983		
FGLESHAHTIQICK	14	Unmodified	_FGLESHAHTIQICK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.914307	1639.81406	1.8797	0.001543	-0.30659	-0.00025168	1.5731	0.0012914	820.914101391743	7.0037	0.053221	7.0037	6.986	7.0392	0	303	37	1.12200181823275	0.0240011742014585	1.12200181823275	453.176851469836	0	9.69408104287021						154	7	3	NaN	NaN	NaN	0.00033808	1	22755	78.043	75.906	1	28854			5984	2308	5100	5228	5984	5984		
FGLGSVAGAVGATAVYPIDLVK	22	Unmodified	_FGLGSVAGAVGATAVYPIDLVK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.0857	2104.15684	0.5638	0.00059373	0.98513	0.0010374	1.5489	0.0016312	1053.58796328739	19.233	0.079799	19.233	19.206	19.286	0	84	61	1.26725910986255	0.039619309957897	1.26725910986255	510.898877982792	0	15.9726301009882						406	10	4	NaN	NaN	NaN	8.4295E-23	1	33380	155.38	152.99	1	114050			5985	3248	5101	5229	5985	5985		
FGLIQSMK	8	Unmodified	_FGLIQSMK_			0	0	0	P53990	P53990	P53990	IST1	IST1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.254588	922.494624	-0.39439	-0.00018231	-2.4837	-0.0011481	-2.8781	-0.0013304	462.253406796994	9.8509	0.14186	9.8509	9.8154	9.9573	0	714	31	0.845418525735192	0.0203835468475623	0.845418525735192	343.67993395769	0	8.28632898516349						173	17	3	NaN	NaN	NaN	0.0063831	1	2748	78.178	58.691	1	32705			5986	1246	5102	5230	5986	5986		
FGLLDQDLSNIGPAYDNQK	19	Unmodified	_FGLLDQDLSNIGPAYDNQK_			0	0	0	Q9UBL3	Q9UBL3	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.51838	2107.0222	1.795	0.0018929	0.45969	0.00048475	2.2547	0.0023776	1054.51953521652	15.775	0.1596	15.775	15.695	15.854	0	129	79	1.23753038177212	0.0516040383789338	1.23753038177212	498.909215344868	0	20.8041197820072						627	19	4	NaN	NaN	NaN	7.7469E-08	1	33421	78.71	72.506	1	127310			5987	3178	5103	5231	5987	5987		
FGLSVGHHLGK	11	Unmodified	_FGLSVGHHLGK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	384.548852	1150.62473	-0.25944	-9.9766E-05	-1.896	-0.00072909	-2.1554	-0.00082885	384.548150878896	5.5849	0.27491	5.5849	5.5494	5.8243	0	891	49	0.724677416575734	0.0328689540036932	0.724677416575734	440.601775246915	0	19.9842290559677						605	32	4	NaN	NaN	NaN	0.018607	1	8094	33.426	16.031	1	331710			5988	715	5104	5232	5988	5988		
FGLSVGHHLGK	11	Unmodified	_FGLSVGHHLGK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.31964	1150.62473	2.2603	0.0013027	0.97271	0.00056059	3.233	0.0018633	576.821899258195	5.5937	0.33699	5.5937	5.5228	5.8598	0	537	49	0.965173861991602	0.0323434604594182	0.965173861991602	391.219318505217	0	13.109955685004						712	39	5	NaN	NaN	NaN	1.9378E-05	1	8095	111.39	76.46	1	593350			5989	715	5104	5232	5989	5989		
FGLYLPLFK	9	Unmodified	_FGLYLPLFK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.323328	1096.6321	-0.4303	-0.00023637	0.66602	0.00036586	0.23572	0.00012949	549.32360063848	18.967	0.11524	18.967	18.931	19.046	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	361.859062249636	0	9.06406972359071						318	14	4	NaN	NaN	NaN	7.3548E-05	1	6637	84.699	46.377	1	123750			5990	3248	5105	5233	5990	5990		
FGMFEFLSNHMR	12	Unmodified	_FGMFEFLSNHMR_			0	0	0	P53007	P53007	P53007	SLC25A1	Tricarboxylate transport protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.900568	1514.67988	-1.7172	-0.00086872	-0.24061	-0.00012172	-1.9578	-0.00099044	505.900705616213	16.174	0.097543	16.174	16.129	16.227	0	750	22	0.820941264895493	0.0142913101718418	0.820941264895493	497.708702821703	0	8.66433416299941						215	12	4	NaN	NaN	NaN	0.00027143	1	18949	74.424	67.677	1	57560			5991	1229	5106	5234	5991	5991		
FGMTPSK	7	Unmodified	_FGMTPSK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	384.191457	766.368361	0.16699	6.4157E-05	-1.8189	-0.00069882	-1.6519	-0.00063466	384.190833897346	4.0154	0.22169	4.0154	3.9534	4.1751	0	888	34	0.726732155490709	0.0225958260980745	0.726732155490709	296.312884220035	0	9.2130702513553						373	26	3	NaN	NaN	NaN	0.028254	1	727	63.301	63.301	1	116150			5992	1265	5107	5235	5992	5992		
FGNDGLHEPLDWAQEEGK	18	Unmodified	_FGNDGLHEPLDWAQEEGK_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.313188	2040.91773	-0.49342	-0.00033617	-1.6917	-0.0011526	-2.1851	-0.0014887	681.646403048187	11.642	0.097554	11.642	11.598	11.695	0	687	34	0.863749705078866	0.0223892235225879	0.863749705078866	522.438857686917	0	13.5421179224249						309	12	4	NaN	NaN	NaN	3.2367E-14	1	32353	107.46	102.9	1	112670			5993	3447	5108	5236	5993	5993		
FGNDVQHFK	9	Unmodified	_FGNDVQHFK_			0	0	0	P62993	P62993	P62993	GRB2	Growth factor receptor-bound protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	364.513807	1090.51959	-0.24683	-8.9972E-05	-0.28378	-0.00010344	-0.53061	-0.00019341	364.513688221981	4.2105	0.12413	4.2105	4.1751	4.2992	0	885	25	0.728786607772777	0.0164344731641031	0.728786607772777	443.388732466454	0	9.99861982543115						182	15	3	NaN	NaN	NaN	0.060672	1	6467	22.386	16.638	1	41691			5994	1420	5109	5237	5994	5994		
FGNEITQLAR	10	Unmodified	_FGNEITQLAR_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.806562	1147.59857	-0.092718	-5.3295E-05	0.362	0.00020808	0.26928	0.00015478	574.806911017399	9.3455	0.12419	9.3455	9.3011	9.4253	0	642	40	0.894250814548268	0.0264049676271125	0.894250814548268	362.483005045356	0	10.7032074870808						301	15	3	NaN	NaN	NaN	2.2471E-07	1	8005	162.49	136.04	1	87994			5995	2334	5110	5238	5995	5995		
FGNEVIPVTVTVK	13	Unmodified	_FGNEVIPVTVTVK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.90066	1401.78677	1.3221	0.000928	-2.4147	-0.0016949	-1.0926	-0.00076688	701.900463788948	12.502	0.15955	12.502	12.458	12.618	0	483	61	1.00151498427745	0.0403455444968032	1.00151498427745	405.087110052279	0	16.3187373931172						763	19	4	NaN	NaN	NaN	0.018149	1	15524	55.578	48.831	1	463640			5996	832	5111	5239	5996	5996		
FGNQADHFLGSLAFAK	16	Unmodified	_FGNQADHFLGSLAFAK_			0	0	0	Q9H488	Q9H488	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.958128	1721.85255	-0.63041	-0.00036246	-1.4473	-0.00083215	-2.0777	-0.0011946	575.291644034768	13.815	0.12412	13.815	13.77	13.895	0	738	82	0.829104889055312	0.0550317947038662	0.829104889055312	502.110652522828	0	33.3275689397331						512	15	4	NaN	NaN	NaN	9.2638E-07	1	25104	70.806	60.785	1	148370			5997	2890	5112	5240	5997	5997		
FGNQADHFLGSLAFAK	16	Unmodified	_FGNQADHFLGSLAFAK_			0	0	0	Q9H488	Q9H488	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.933554	1721.85255	2.4782	0.002136	1.6093	0.0013871	4.0874	0.0035231	861.934404053431	13.815	0.097525	13.815	13.77	13.868	0	246	58	1.1599488233373	0.0379104952093297	1.1599488233373	468.316593296425	0	15.3059459257291						464	12	4	NaN	NaN	NaN	0.00012985	1	25106	62.398	57.01	1	122910			5998	2890	5112	5240	5998	5998		
FGPALSVK	8	Unmodified	_FGPALSVK_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	409.742171	817.469789	-0.57065	-0.00023382	-1.9949	-0.00081741	-2.5656	-0.0010512	409.741399181927	7.7398	0.23952	7.7398	7.6334	7.8729	0	858	28	0.747263789720611	0.0184668793388617	0.747263789720611	304.34997576499	0	7.52129884593887						306	28	3	NaN	NaN	NaN	0.071503	1	1180	26.456	6.2228	1	75424			5999	661	5113	5241	5999	5999		
FGPDTQHLVLNENCASVHNLR	21	Unmodified	_FGPDTQHLVLNENCASVHNLR_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	606.048658	2420.16553	0.57026	0.0003456	0.32318	0.00019586	0.89344	0.00054147	606.29867414159	9.5849	0.25713	9.5849	9.4164	9.6736	0	609	28	0.916577990479294	0.0182550299424538	0.916577990479294	738.405131512193	0	14.7064493424809						365	30	5	NaN	NaN	NaN	0.012264	1	36441	24.832	23.208	1	89227			6000	2691	5114	5242	6000	6000		
FGPLTPELMVPR	12	Unmodified	_FGPLTPELMVPR_			0	0	0	P40937	P40937	P40937	RFC5	Replication factor C subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.870848	1355.72714	0.82982	0.00056334	-0.33342	-0.00022635	0.4964	0.00033699	678.87025545095	15.313	0.14188	15.313	15.251	15.393	0	489	58	0.997481546940468	0.0383309147863334	0.997481546940468	403.589547753304	0	15.5090152905957						511	17	4	NaN	NaN	NaN	0.0022455	1	14068	74.424	68.928	1	186380			6001	1024	5115	5243	6001	6001		
FGPYESYDSR	10	Unmodified	_FGPYESYDSR_			0	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.76456	1219.51457	1.4097	0.00086096	1.5767	0.00096299	2.9863	0.001824	610.765620128626	6.7555	0.18618	6.7555	6.6845	6.8707	0	576	22	0.938871150116794	0.0141747684454057	0.938871150116794	380.303189616652	0	5.74169272449649						285	22	3	NaN	NaN	NaN	0.0069129	1	9996	63.397	52.037	1	88188			6002	1960	5116	5244	6002	6002		
FGPYYTEPVIAGLDPK	16	Unmodified	_FGPYYTEPVIAGLDPK_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.95362	1765.89269	2.4672	0.0021809	0.33985	0.00030041	2.807	0.0024813	884.455842460601	15.092	0.23056	15.092	14.994	15.225	0	273	82	1.14198628764525	0.053909883704363	1.14198628764525	460.972582948472	0	21.7611880339598						1309	27	4	NaN	NaN	NaN	1.0117E-06	1	26296	108.24	96.225	1	665930			6003	1142	5117	5245	6003	6003		
FGQAATMEGIGAIGGTPPAFNR	22	Unmodified	_FGQAATMEGIGAIGGTPPAFNR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.03621	2162.05787	1.5612	0.0016893	-1.2891	-0.0013948	0.2721	0.00029442	1082.53665800618	14.249	0.15074	14.249	14.214	14.365	0	156	61	1.21966378336455	0.0397008447430429	1.21966378336455	491.624352097167	0	16.0026905289151						577	18	3	NaN	NaN	NaN	0.00045084	1	34208	62.711	58.861	1	114270			6004	1824	5118	5246	6004	6004		
FGQDIISPLLSVK	13	Unmodified	_FGQDIISPLLSVK_			0	0	0	Q8WVM8	Q8WVM8	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.908485	1415.80242	0.97558	0.0006916	-1.2631	-0.00089542	-0.28752	-0.00020383	708.907718102821	16.519	0.18622	16.519	16.413	16.599	0	435	49	1.03374239103424	0.0322051603576423	1.03374239103424	418.081828467304	0	13.0249010248434						375	22	3	NaN	NaN	NaN	0.00031794	1	15976	80.623	48.483	1	96839			6005	2381	5119	5247	6005	6005		
FGQIMIENLR	10	Unmodified	_FGQIMIENLR_			0	0	0	Q9UIC8	Q9UIC8	Q9UIC8	LCMT1	Leucine carboxyl methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.82644	1219.63833	0.21862	0.00013354	0.16072	9.8174E-05	0.37934	0.00023171	610.826853694089	12.582	0.11524	12.582	12.538	12.653	0	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	386.861511391831	0	8.19389595857194						197	14	3	NaN	NaN	NaN	0.0003231	1	10011	81.163	74.473	1	44536			6006	3236	5120	5248	6006	6006		
FGQMLGSNMTEFHSQISK	18	Unmodified	_FGQMLGSNMTEFHSQISK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.32052	2040.93973	1.0585	0.00072115	0.31546	0.00021493	1.3739	0.00093608	681.655307518889	11.181	0.10641	11.181	11.146	11.252	0	570	31	0.942920803299286	0.0202482682426971	0.942920803299286	570.32543333304	0	12.247160439512						340	13	5	NaN	NaN	NaN	5.591E-08	1	32356	135.13	131.28	1	120250			6007	1737	5121	5249	6007	6007		
FGQVYTEAK	9	Unmodified	_FGQVYTEAK_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.763832	1041.51311	1.194	0.00062301	2.642	0.0013785	3.836	0.0020015	521.764968310868	4.9021	0.29258	4.9021	4.8135	5.1061	0	687	46	0.863749705078866	0.0305265242845556	0.863749705078866	350.542514270545	0	12.3888257347328						375	34	3	NaN	NaN	NaN	0.010654	1	5257	62.969	45.573	1	100660			6008	1097	5122	5250	6008	6008		
FGQYAGHVVPTILEK	15	Unmodified	_FGQYAGHVVPTILEK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.634874	1657.88279	0.044884	2.4849E-05	-0.99743	-0.00055221	-0.95254	-0.00052736	553.63430523935	10.95	0.097536	10.95	10.897	10.995	0	702	46	0.853568545818287	0.0305519708780012	0.853568545818287	517.085045485025	0	18.5081412951592						304	12	3	NaN	NaN	NaN	0.00089181	1	23266	66.619	55.137	1	78745			6009	1713	5123	5251	6009	6009		
FGSEFSPELQASFQK	15	Unmodified	_FGSEFSPELQASFQK_			0	0	0	CON__Q3SX09	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.409577	1700.8046	2.8344	0.0024133	0.019824	1.6878E-05	2.8543	0.0024301	851.409362762365	12.813	0.1951	12.813	12.751	12.946	0	357	73	1.08596037261705	0.0480883834850949	1.08596037261705	438.487902514929	0	19.4170753753173						962	23	5	NaN	NaN	NaN	4.9462E-24	1	24514	196.38	178.65	1	591560		+	6010	40	5124	5252	6010	6010		
FGSHCGIPEEYCVSGVNTWR	20	Unmodified	_FGSHCGIPEEYCVSGVNTWR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.680888	2354.02084	1.11	0.00087211	-0.07321	-5.752E-05	1.0368	0.00081459	786.014543919825	11.128	0.097535	11.128	11.092	11.19	0	582	43	0.934820374997243	0.0283672188304905	0.934820374997243	564.917953586256	0	17.1424924394715						311	12	4	NaN	NaN	NaN	7.6263E-06	1	36083	57.62	50.308	1	59780			6011	3136	5125	5253	6011	6011		
FGSLLPIHPVTSG	13	Unmodified	_FGSLLPIHPVTSG_			0	0	0	Q15257	Q15257	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.86662	1323.71869	0.80545	0.00053391	-1.3793	-0.00091427	-0.57381	-0.00038036	662.865615922421	14.045	0.15073	14.045	14.01	14.161	0	495	85	0.993446994398923	0.0565384843480868	0.993446994398923	402.055218695698	0	22.8815355197153						689	18	3	NaN	NaN	NaN	0.0049206	1	13107	63.397	47.518	1	182050			6012	1825	5126	5254	6012	6012		
FGSTADALVSDDETTR	16	Unmodified	_FGSTADALVSDDETTR_			0	0	0	Q5JRA6	Q5JRA6	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.886663	1683.75877	2.0012	0.0016868	1.1285	0.00095116	3.1296	0.0026379	842.887811330722	8.4761	0.13301	8.4761	8.414	8.547	0	375	31	1.07392668217569	0.0200644481678189	1.07392668217569	433.664429453291	0	8.1022639733323						223	16	3	NaN	NaN	NaN	3.0325E-06	1	24003	83.214	76.007	1	46243			6013	1965	5127	5255	6013	6013		
FGSVPHGGFGMGFER	15	Unmodified	_FGSVPHGGFGMGFER_			0	0	0	Q96I59	Q96I59	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.913754	1580.71943	-1.1585	-0.00061158	0.11587	6.117E-05	-1.0426	-0.00055041	527.913825809129	10.507	0.079846	10.507	10.472	10.551	0	771	31	0.806643990516186	0.0204317832671826	0.806643990516186	488.855929310144	0	12.3824122090718						197	10	3	NaN	NaN	NaN	0.014442	1	20986	47.915	45.614	1	48328			6014	2556	5128	5256	6014	6014		
FGTFGGLGSK	10	Unmodified	_FGTFGGLGSK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.753267	969.491981	-0.20469	-9.9429E-05	1.5596	0.00075758	1.3549	0.00065816	485.754066647049	8.7866	0.30175	8.7866	8.7156	9.0174	0	726	40	0.837263974740672	0.0265115052801159	0.837263974740672	340.122714696318	0	10.7697995119779						509	35	3	NaN	NaN	NaN	0.0043715	1	3618	47.561	21.338	1	221720			6015	1584	5129	5257	6015	6015		
FGTINIVHPK	10	Unmodified	_FGTINIVHPK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	375.885353	1124.63423	-0.74755	-0.00028099	-0.85848	-0.00032269	-1.606	-0.00060369	375.885187607804	7.4205	0.19505	7.4205	7.3674	7.5624	0	867	49	0.741107305531458	0.0328323033246176	0.741107305531458	450.714179651656	0	19.9673981737604						474	23	4	NaN	NaN	NaN	0.047086	1	7397	30.593	14.135	1	206990			6016	3450	5130	5258	6016	6016		
FGTINIVHPK	10	Unmodified	_FGTINIVHPK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.324391	1124.63423	1.8538	0.0010443	1.4937	0.00084143	3.3474	0.0018857	563.325397668326	7.4205	0.23052	7.4205	7.3585	7.589	0	564	46	0.946969335010767	0.0303618936649183	0.946969335010767	383.945407517162	0	12.310123681077						615	27	4	NaN	NaN	NaN	1.0495E-07	1	7398	170.95	152.54	1	457180			6017	3450	5130	5258	6017	6017		
FGTVAVPNILLFQGAK	16	Unmodified	_FGTVAVPNILLFQGAK_			0	0	0	Q96J42	Q96J42	Q96J42	TXNDC15	Thioredoxin domain-containing protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.982515	1673.95048	1.3361	0.0011196	-1.2312	-0.0010317	0.10496	8.7956E-05	838.482721638668	18.204	0.070925	18.204	18.178	18.248	0	342	31	1.09598084995137	0.020036815138085	1.09598084995137	442.591342524727	0	8.09149257697192						151	9	3	NaN	NaN	NaN	0.0017484	1	23744	66.664	64.363	1	39396			6018	2565	5131	5259	6018	6018		
FGTVLTEHVAAAELGAR	17	Unmodified	_FGTVLTEHVAAAELGAR_			0	0	0	O43598	O43598	O43598	DNPH1	2-deoxynucleoside 5-phosphate N-hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.312571	1740.91588	-1.2111	-0.00070405	0.17906	0.00010409	-1.0321	-0.00059996	581.312521129699	11.279	0.079808	11.279	11.243	11.323	0	756	25	0.816857749704129	0.0163340619501384	0.816857749704129	494.650496569651	0	9.89113692997574						143	10	3	NaN	NaN	NaN	7.4529E-07	1	25637	75.012	71.724	1	38595			6019	210	5132	5260	6019	6019		
FGTVLTEHVAAAELGAR	17	Unmodified	_FGTVLTEHVAAAELGAR_			0	0	0	O43598	O43598	O43598	DNPH1	2-deoxynucleoside 5-phosphate N-hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.465218	1740.91588	2.0284	0.0017676	-1.8352	-0.0015993	0.1932	0.00016837	871.463849414176	11.27	0.062084	11.27	11.243	11.305	0	240	31	1.16393748060522	0.0199432886001865	1.16393748060522	469.885886727471	0	8.05117972770131						183	8	3	NaN	NaN	NaN	4.4818E-10	1	25638	108.91	102.54	1	39394			6020	210	5132	5260	6020	6020		
FGTVLTEHVAAAELGAR	17	Unmodified	_FGTVLTEHVAAAELGAR_			0	0	0	O43598	O43598	O43598	DNPH1	2-deoxynucleoside 5-phosphate N-hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.312571	1740.91588	0.5235	0.00030432	1.9957	0.0011601	2.5192	0.0014645	581.314651835724	11.27	0.22174	11.27	11.19	11.412	0	627	79	0.90440375274676	0.0527623853487573	0.90440375274676	547.664215872874	0	31.9504096614478						641	26	4	NaN	NaN	NaN	1.1902E-06	1	25639	104.49	97.635	1	204870			6021	210	5132	5260	6021	6021		
FGVEQDR	7	Unmodified	_FGVEQDR_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.706317	849.398081	-0.13153	-5.5991E-05	1.2814	0.00054548	1.1498	0.00048949	425.706827679299	3.5455	0.31033	3.5455	3.5012	3.8115	0	819	37	0.773912161060781	0.0245796540978664	0.773912161060781	315.00804852855	0	10.0047386001311						536	36	3	NaN	NaN	NaN	0.0092387	1	1542	56.091	38.396	1	188860			6022	1742	5133	5261	6022	6022		
FGVEQDVDMVFASFIR	16	Unmodified	_FGVEQDVDMVFASFIR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.638067	1858.89237	-0.092486	-5.74E-05	-0.00051306	-3.1843E-07	-0.092999	-5.7719E-05	620.972013291399	20.111	0.070937	20.111	20.102	20.173	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	548.618351212301	0	11.0565079552248						163	9	5	NaN	NaN	NaN	5.7173E-05	1	28672	136.06	130.36	1	168340			6023	699	5134	5262	6023	6023		
FGVEQDVDMVFASFIR	16	Unmodified	_FGVEQDVDMVFASFIR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.453462	1858.89237	1.4697	0.0013675	-0.19981	-0.00018591	1.2699	0.0011816	930.954566585749	20.111	0.097536	20.111	20.084	20.182	0	276	55	1.13998907770044	0.0359671056362876	1.13998907770044	459.987001064197	0	14.5127715538891						344	12	5	NaN	NaN	NaN	2.875E-33	1	28673	206.7	198.32	1	256040			6024	699	5134	5262	6024	6024		
FGVEQDVDMVFASFIR	16	Oxidation (M)	_FGVEQDVDM(Oxidation (M))VFASFIR_	FGVEQDVDM(1)VFASFIR	FGVEQDVDM(110)VFASFIR	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.969705	1874.88729	-0.27949	-0.00017495	-0.27209	-0.00017032	-0.55158	-0.00034527	626.303850368652	20.022	0.044324	20.022	20.013	20.057	0	642	31	0.894250814548268	0.020312920651839	0.894250814548268	541.210624639436	0	12.2936074481369						153	6	5	NaN	NaN	NaN	2.0862E-06	1	29035	108.24	100.67	1	79872			6025	699	5134	5263	6025	6025	223	
FGVEQDVDMVFASFIR	16	Oxidation (M)	_FGVEQDVDM(Oxidation (M))VFASFIR_	FGVEQDVDM(1)VFASFIR	FGVEQDVDM(200)VFASFIR	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.450919	1874.88729	1.435	0.0013467	0.66642	0.0006254	2.1014	0.0019721	938.953138145265	20.022	0.053206	20.022	20.013	20.066	0	282	58	1.13599383354359	0.0379574461906307	1.13599383354359	458.345945613465	0	15.3149084560143						282	7	6	NaN	NaN	NaN	2.5969E-17	1	29037	202.24	200.27	1	145350			6026	699	5134	5263	6026	6026	223	
FGVEQDVDMVFASFIRK	17	Unmodified	_FGVEQDVDMVFASFIRK_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.336388	1986.98733	-0.057202	-3.7944E-05	-0.18175	-0.00012056	-0.23896	-0.00015851	663.336304125551	19.685	0.062081	19.685	19.658	19.72	0	588	19	0.93076847747433	0.0121573771653146	0.93076847747433	563.078274438208	0	7.35473441743045						121	8	4	NaN	NaN	NaN	5.9151E-07	1	31389	109.47	101.89	1	28845			6027	699	5135	5264	6027	6027		
FGVICLEDLIHEIAFPGK	18	Unmodified	_FGVICLEDLIHEIAFPGK_			0	0	0	Q6DKI1	Q6DKI1	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.695804	2057.06558	-0.17582	-0.00012073	-0.41032	-0.00028176	-0.58613	-0.0004025	687.029749583177	20.119	0.035472	20.119	20.111	20.146	0	576	28	0.938871150116794	0.0182221791516658	0.938871150116794	567.845953685947	0	11.0210977271233						60	5	3	NaN	NaN	NaN	0.061512	1	32663	12.683	12.531	1	12397			6028	2030	5136	5265	6028	6028		
FGVIFAGAQK	10	Unmodified	_FGVIFAGAQK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.292559	1036.57057	0.28555	0.00014828	-2.2657	-0.0011765	-1.9801	-0.0010283	519.291232049011	10.64	0.24829	10.64	10.543	10.791	0	720	79	0.841341816837976	0.0529604564345986	0.841341816837976	341.469801726308	0	21.4947078537281						955	29	4	NaN	NaN	NaN	1.1751E-07	1	5160	130	99.439	1	488850			6029	3450	5137	5266	6029	6029		
FGVLSDNFK	9	Unmodified	_FGVLSDNFK_			0	0	0	Q06203	Q06203	Q06203	PPAT	Amidophosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.766374	1025.5182	0.43325	0.00022259	-1.1602	-0.00059607	-0.72695	-0.00037348	513.76592451304	10.782	0.26601	10.782	10.72	10.986	0	684	31	0.86578508874114	0.0203552522347787	0.86578508874114	351.440055804035	0	8.26261744897607						314	31	4	NaN	NaN	NaN	0.0062391	1	4871	79.809	62.414	1	112730			6030	1557	5138	5267	6030	6030		
FGVPIIADGGIQTVGHVVK	19	Unmodified	_FGVPIIADGGIQTVGHVVK_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.363154	1906.06763	1.4789	0.0009411	-0.22162	-0.00014103	1.2572	0.00080006	636.697313927896	14.533	0.12415	14.533	14.471	14.595	0	450	34	1.02367897599655	0.0221486894009117	1.02367897599655	619.467632311571	0	13.4030262452449						365	15	4	NaN	NaN	NaN	0.033306	1	29728	36.46	35.84	1	105190			6031	786	5139	5268	6031	6031		
FGVPVIADGGIQNVGHIAK	19	Unmodified	_FGVPVIADGGIQNVGHIAK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.523067	1891.03158	0.43338	0.0004102	-0.33429	-0.00031641	0.09909	9.3791E-05	946.522871892163	13.425	0.11528	13.425	13.363	13.478	0	57	37	1.28506705146927	0.0237357992718255	1.28506705146927	518.460861075815	0	9.57621854417903						282	14	3	NaN	NaN	NaN	2.2009E-10	1	29401	115.35	110.25	1	62926			6032	666	5140	5269	6032	6032		
FGVPVIADGGIQNVGHIAK	19	Unmodified	_FGVPVIADGGIQNVGHIAK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.351137	1891.03158	1.3288	0.00083892	0.60964	0.0003849	1.9384	0.0012238	631.685744118109	13.434	0.19511	13.434	13.318	13.513	0	477	58	1.0055473068722	0.0383150231076109	1.0055473068722	608.530383964385	0	23.1872290482323						921	23	5	NaN	NaN	NaN	4.1119E-05	1	29402	68.108	64.603	1	339000			6033	666	5140	5269	6033	6033		
FGVQMDR	7	Unmodified	_FGVQMDR_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.705263	851.395972	-0.86742	-0.00037013	-1.2138	-0.00051792	-2.0812	-0.00088805	426.704971322621	5.913	0.25722	5.913	5.8687	6.1259	0	828	37	0.767766820543916	0.0245865031477591	0.767766820543916	312.495050017589	0	10.0071536374463						475	30	4	NaN	NaN	NaN	0.0061936	1	1577	76.833	59.139	1	246120			6034	1742	5141	5270	6034	6034		
FGVQTDR	7	Unmodified	_FGVQTDR_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.70886	821.403166	-0.56161	-0.00023122	2.3829	0.00098106	1.8213	0.00074984	411.709736124686	3.6164	0.34581	3.6164	3.5189	3.8647	0	825	40	0.769815552739974	0.0266335239759634	0.769815552739974	313.510213326663	0	10.8466005312904						451	40	3	NaN	NaN	NaN	0.032483	1	1219	42.229	3.9067	1	179460			6035	1742	5142	5271	6035	6035		
FGVVLDEIK	9	Unmodified	_FGVVLDEIK_			0	0	0	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.292225	1018.5699	-0.21351	-0.00010895	-2.5938	-0.0013236	-2.8073	-0.0014325	510.291839009598	12.387	0.25715	12.387	12.298	12.556	0	687	46	0.863749705078866	0.0305265242845556	0.863749705078866	350.645531883997	0	12.3924665691786						564	30	4	NaN	NaN	NaN	0.011621	1	4716	49.96	30.473	1	243140			6036	106	5143	5272	6036	6036		
FGVVTEVVMIYDAEK	15	Unmodified	_FGVVTEVVMIYDAEK_			0	0	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.434206	1698.85386	1.2764	0.0010855	0.018173	1.5455E-05	1.2946	0.001101	850.434589606794	18.284	0.11528	18.284	18.248	18.364	-3.5527E-15	330	55	1.10399226369747	0.036051375024104	1.10399226369747	445.772937266261	0	14.556920247936						268	14	3	NaN	NaN	NaN	0.00012895	1	24469	99.276	91.719	1	61510			6037	2517	5144	5273	6037	6037		
FGVYDIDNK	9	Unmodified	_FGVYDIDNK_			0	0	0	O75131	O75131	O75131	CPNE3	Copine-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.761289	1069.50803	0.45251	0.00024244	-1.3308	-0.00071298	-0.87828	-0.00047055	535.76120282333	9.0351	0.15964	9.0351	8.9375	9.0972	0	672	40	0.873923798053065	0.0264453027366778	0.873923798053065	354.550421831961	0	10.72884530854						390	19	4	NaN	NaN	NaN	0.00019296	1	5944	113.7	75.376	1	139460			6038	304	5145	5274	6038	6038		
FGWDCHGLPVEYEIDK	16	Unmodified	_FGWDCHGLPVEYEIDK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.633093	1963.87745	0.14558	9.5446E-05	-1.2892	-0.00084524	-1.1436	-0.00074979	655.966957865598	13.903	0.15961	13.903	13.859	14.019	0	711	40	0.847456455381371	0.0264930907704451	0.847456455381371	512.719593275843	0	16.0285836967633						603	19	6	NaN	NaN	NaN	1.3547E-06	1	30993	123.99	118.6	1	432310			6039	1036	5146	5275	6039	6039		
FGWDCHGLPVEYEIDK	16	Unmodified	_FGWDCHGLPVEYEIDK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.946001	1963.87745	2.1726	0.0021356	3.4738	0.0034146	5.6465	0.0055502	983.451141310492	13.903	0.19505	13.903	13.806	14.001	0	213	55	1.18187287897418	0.0358634154604045	1.18187287897418	476.698271761983	0	14.4652005081082						671	23	6	NaN	NaN	NaN	0.070686	1	30994	23.149	21.438	1	188110			6040	1036	5146	5275	6040	6040		
FGYTVSEENYMCR	13	Unmodified	_FGYTVSEENYMCR_			0	0	0	Q96EK6	Q96EK6	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.345065	1654.67558	2.3695	0.0019628	-0.088558	-7.3357E-05	2.281	0.0018894	828.345838231603	9.9396	0.11524	9.9396	9.9041	10.019	0	363	31	1.08195024817156	0.0200561522597538	1.08195024817156	436.967126545396	0	8.10007598529791						233	14	4	NaN	NaN	NaN	3.9191E-05	1	23172	96.957	89.817	1	54511			6041	2513	5147	5276	6041	6041		
FGYVDFESAEDLEK	14	Unmodified	_FGYVDFESAEDLEK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.872493	1647.73043	2.5416	0.0020965	2.3769	0.0019606	4.9185	0.0040571	824.874492000763	14.125	0.399	14.125	14.054	14.453	0	357	88	1.08596037261705	0.058150869236149	1.08596037261705	438.60203660884	0	23.4862066063099						1512	46	5	NaN	NaN	NaN	1.4016E-24	1	22959	244.44	223.29	1	1902500			6042	764	5148	5277	6042	6042		
FHDFLGDSWGILFSHPR	17	Unmodified	_FHDFLGDSWGILFSHPR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	508.502247	2029.97988	-0.95612	-0.00048619	-0.10057	-5.1142E-05	-1.0567	-0.00053733	508.752902799307	17.725	0.1862	17.725	17.672	17.858	0	723	52	0.839303037468863	0.0346785357813113	0.839303037468863	676.892059083774	0	27.9679977827948						631	22	6	NaN	NaN	NaN	0.024286	1	32151	23.149	22.997	1	298640			6043	893	5149	5278	6043	6043		
FHDFLGDSWGILFSHPR	17	Unmodified	_FHDFLGDSWGILFSHPR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.667237	2029.97988	1.1527	0.00078112	0.35161	0.00023828	1.5043	0.0010194	678.001953674344	17.725	0.35465	17.725	17.672	18.027	0	510	58	0.983355730988811	0.0383733409647169	0.983355730988811	594.804165461501	0	23.2109523839729						1235	41	6	NaN	NaN	NaN	4.9578E-14	1	32154	208.35	188.06	1	1058800			6044	893	5149	5278	6044	6044		
FHDFLGDSWGILFSHPR	17	Unmodified	_FHDFLGDSWGILFSHPR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.99722	2029.97988	1.0685	0.0010856	0.50289	0.00051093	1.5714	0.0015965	1016.4987934573	17.725	0.14187	17.725	17.646	17.787	0	123	97	1.24149774378079	0.0634952748055464	1.24149774378079	500.633014816516	0	25.6044209598793						722	17	4	NaN	NaN	NaN	0.0021876	1	32155	61.042	57.192	1	139160			6045	893	5149	5278	6045	6045		
FHDLLSQLDDQYSR	14	Unmodified	_FHDLLSQLDDQYSR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.612797	1735.81656	-0.3723	-0.00021579	-0.22941	-0.00013297	-0.60171	-0.00034876	579.6129850754	12.822	0.11528	12.822	12.768	12.884	0	720	28	0.841341816837976	0.0183490160938558	0.841341816837976	509.488703779091	0	11.1115556580978						340	14	5	NaN	NaN	NaN	1.3976E-05	1	25490	110.52	102.05	1	125560			6046	1044	5150	5279	6046	6046		
FHDNFGFDDLVR	12	Unmodified	_FHDNFGFDDLVR_			0	0	0	O00165	O00165	O00165	HAX1	HCLS1-associated protein X-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.565119	1480.67353	-2.5941	-0.0012829	0.099783	4.9349E-05	-2.4943	-0.0012336	494.565172757874	13.079	0.062065	13.079	13.052	13.114	0	789	22	0.794378096728713	0.0143171820587036	0.794378096728713	481.704373427442	0	8.68182197021184						94	8	3	NaN	NaN	NaN	0.013927	1	17911	45.939	42.837	1	21205			6047	56	5151	5280	6047	6047		
FHDPDSAVVAQHLTNTVFVDR	21	Unmodified	_FHDPDSAVVAQHLTNTVFVDR_			0	0	0	Q05519	Q05519	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.060862	2367.16076	1.2153	0.00096013	0.88798	0.00070156	2.1032	0.0016617	790.396013181661	12.157	0.07981	12.157	12.121	12.201	0	468	121	1.01159370163332	0.0806800513941562	1.01159370163332	611.292661273012	0	48.7538853284141						772	10	4	NaN	NaN	NaN	4.563E-06	1	36197	77.347	73.394	1	168360			6048	1552	5152	5281	6048	6048		
FHEAQLSEK	9	Unmodified	_FHEAQLSEK_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.772188	1087.52982	1.6844	0.00091763	-2.3914	-0.0013028	-0.70701	-0.00038516	544.770718061363	2.9868	0.17734	2.9868	2.9247	3.102	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	359.42403829434	0	8.24377814467169						241	20	2	NaN	NaN	NaN	0.007225	1	6396	69.915	58.266	1	57722			6049	352	5153	5282	6049	6049		
FHEICSNLVK	10	Unmodified	_FHEICSNLVK_			0	0	0	Q15041	Q15041	Q15041	ARL6IP1	ADP-ribosylation factor-like protein 6-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.816073	1245.61759	2.4085	0.0015025	-1.5043	-0.00093841	0.90419	0.00056405	623.815942552157	6.0993	0.17734	6.0993	6.055	6.2323	0	534	43	0.967195187796614	0.0282966100811786	0.967195187796614	391.684367551296	0	11.4592586515461						541	21	4	NaN	NaN	NaN	5.569E-05	1	10786	92.732	63.63	1	324750			6050	1798	5154	5283	6050	6050		
FHEQFIVR	8	Unmodified	_FHEQFIVR_			0	0	0	Q06787	Q06787	Q06787	FMR1	Fragile X mental retardation protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.287808	1074.56106	0.89815	0.00048347	1.829	0.00098452	2.7271	0.001468	538.289065746341	6.5338	0.16848	6.5338	6.4629	6.6313	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.540888296608	0	7.40869337258147						222	20	3	NaN	NaN	NaN	0.00064011	1	6074	117.18	98.774	1	60994			6051	1563	5155	5284	6051	6051		
FHFGDSLCTHK	11	Unmodified	_FHFGDSLCTHK_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.208278	1347.60301	-0.1699	-7.6492E-05	-0.44212	-0.00019905	-0.61203	-0.00027554	450.208109095526	6.0815	0.17736	6.0815	6.0372	6.2146	0	822	28	0.771863999559055	0.0184334553037235	0.771863999559055	468.479093376032	0	11.1880958736375						304	21	5	NaN	NaN	NaN	0.00042116	1	13819	92.732	85.581	1	107750			6052	335	5156	5285	6052	6052		
FHFIDIYLDELSK	13	Unmodified	_FHFIDIYLDELSK_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.28373	1638.82936	-2.3233	-0.0012715	2.2012	0.0012047	-0.12214	-6.6847E-05	547.284534083891	17.557	0.04433	17.557	17.548	17.592	0	762	25	0.812773098473386	0.0163408788985463	0.812773098473386	492.418859101969	0	9.90012705767361						68	6	2	NaN	NaN	NaN	0.0073008	1	22732	29.755	27.084	1	12227			6053	1765	5157	5286	6053	6053		
FHGILDQGEGVLIIFDEPPVDK	22	Unmodified	_FHGILDQGEGVLIIFDEPPVDK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.424919	2437.25293	-0.054359	-4.4217E-05	-0.78329	-0.00063714	-0.83764	-0.00068136	813.758272151853	18.878	0.11525	18.878	18.825	18.94	0	591	25	0.928742107665821	0.01621208273842	0.928742107665821	561.132389108022	0	9.7951031231803						182	14	4	NaN	NaN	NaN	0.00011063	1	36512	64.56	62.828	1	30812			6054	63	5158	5287	6054	6054		
FHHTFSTEIAK	11	Unmodified	_FHHTFSTEIAK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.891055	1316.65134	-0.45938	-0.00020208	1.8595	0.00081796	1.4001	0.00061589	439.891848148325	4.3701	0.16848	4.3701	4.3347	4.5031	0	741	37	0.827064408645228	0.024487471345556	0.827064408645228	502.102303222596	0	14.8660922102079						405	20	4	NaN	NaN	NaN	0.029657	1	12877	44.82	35.843	1	211020			6055	680	5159	5288	6055	6055		
FHLATAEWIAEPVR	14	Unmodified	_FHLATAEWIAEPVR_			0	0	0	Q14197	Q14197	Q14197	ICT1	Peptidyl-tRNA hydrolase ICT1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.291219	1638.85183	-0.90916	-0.00049757	-0.062511	-3.4211E-05	-0.97167	-0.00053178	547.291106270729	13.043	0.079798	13.043	13.017	13.096	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	520.836214179048	0	11.1028655489772						144	10	3	NaN	NaN	NaN	0.00023615	1	22737	67.881	65.002	1	30356			6056	1735	5160	5289	6056	6056		
FHLGLFTDR	9	Unmodified	_FHLGLFTDR_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.293091	1104.57163	0.078243	4.3291E-05	0.65545	0.00036266	0.73369	0.00040595	553.293411557462	12.103	0.17737	12.103	12.059	12.236	0	612	31	0.914549654013882	0.0202875850561227	0.914549654013882	370.882505859857	0	8.22733938002841						312	21	3	NaN	NaN	NaN	8.1178E-06	1	6841	121.31	105.73	1	78555			6057	2355	5161	5290	6057	6057		
FHMDSETHDPIDLQTK	16	Unmodified	_FHMDSETHDPIDLQTK_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.628119	1912.86253	0.05743	3.6676E-05	0.48659	0.00031075	0.54402	0.00034743	638.628569526148	8.0414	0.09769	8.0414	7.997	8.0947	0	714	25	0.845418525735192	0.0163045710776146	0.845418525735192	511.582235782971	0	9.86627175943994						227	12	5	NaN	NaN	NaN	1.959E-06	1	29894	80.815	79.852	1	63467			6058	3343	5162	5291	6058	6058		
FHMVDGNVSGEFTDLVPEK	19	Unmodified	_FHMVDGNVSGEFTDLVPEK_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.670095	2119.98846	0.84604	0.00059872	-0.60346	-0.00042705	0.24259	0.00017167	708.00408269892	13.939	0.31922	13.939	13.832	14.152	0	642	61	0.894250814548268	0.0406145874882705	0.894250814548268	540.751243081866	0	24.559540024164						962	37	6	NaN	NaN	NaN	8.0399E-16	1	33611	173.54	160.86	1	349720			6059	434	5163	5292	6059	6059		
FHMVDGNVSGEFTDLVPEK	19	Unmodified	_FHMVDGNVSGEFTDLVPEK_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.0015	2119.98846	1.1851	0.0012574	2.4089	0.0025559	3.594	0.0038133	1061.50552761517	13.93	0.13299	13.93	13.868	14.001	0	138	37	1.23157729878518	0.0238237664367487	1.23157729878518	496.489344205645	0	9.60414436540606						357	16	3	NaN	NaN	NaN	0.033901	1	33612	34.338	33.067	1	83524			6060	434	5163	5292	6060	6060		
FHMVDGNVSGEFTDLVPEK	19	Oxidation (M)	_FHM(Oxidation (M))VDGNVSGEFTDLVPEK_	FHM(1)VDGNVSGEFTDLVPEK	FHM(63)VDGNVSGEFTDLVPEK	0	1	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.001733	2135.98337	0.11514	8.2093E-05	0.86372	0.00061584	0.97886	0.00069793	713.337080172267	12.165	0.15076	12.165	12.077	12.227	0	633	28	0.900343422309015	0.0182727556379993	0.900343422309015	544.408912175734	0	11.0489517364653						333	18	4	NaN	NaN	NaN	0.00011205	1	33825	63.025	52.267	1	67887			6061	434	5163	5293	6061	6061	63	
FHNELNAHIK	10	Unmodified	_FHNELNAHIK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	408.215761	1221.62546	-0.086804	-3.5435E-05	0.2583	0.00010544	0.17149	7.0007E-05	408.215869125592	3.7583	0.12413	3.7583	3.7317	3.8558	0	855	28	0.749315378969369	0.018464305033006	0.749315378969369	455.268381718401	0	11.2185262812752						263	15	4	NaN	NaN	NaN	0.031419	1	10073	39.324	25.329	1	82186			6062	667	5164	5294	6062	6062		
FHNLEGFLEEFADIAK	16	Unmodified	_FHNLEGFLEEFADIAK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.312348	1878.91521	-0.13731	-8.6133E-05	-0.54004	-0.00033877	-0.67734	-0.00042491	627.646354633858	19.818	0.026601	19.818	19.809	19.836	0	633	16	0.900343422309015	0.0101515302266638	0.900343422309015	544.8893693814	0	6.14372334645054						51	4	3	NaN	NaN	NaN	0.00012679	1	29131	65.173	53.69	1	9808.9			6063	1776	5165	5295	6063	6063		
FHPEPYGLEDDQR	13	Unmodified	_FHPEPYGLEDDQR_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.910955	1601.71104	-1.0786	-0.00057693	1.0694	0.00057202	-0.0091778	-4.9093E-06	534.911647093607	6.8264	0.13298	6.8264	6.7821	6.9151	0	780	28	0.800512323802183	0.0184026828244152	0.800512323802183	485.084756483292	0	11.1514347138603						314	16	4	NaN	NaN	NaN	6.0655E-05	1	21620	74.849	73.699	1	84948			6064	276	5166	5296	6064	6064		
FHPLQEHVVK	10	Unmodified	_FHPLQEHVVK_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.89614	1232.66659	-0.69575	-0.00028658	0.37689	0.00015524	-0.31887	-0.00013134	411.89638830575	4.1041	0.10643	4.1041	4.0686	4.1751	0	849	22	0.753417699604308	0.0143571223589389	0.753417699604308	457.71512852096	0	8.72221625422947						168	13	3	NaN	NaN	NaN	0.048678	1	10407	21.275	13.092	1	47543			6065	2107	5167	5297	6065	6065		
FHQFLVSETESGNISR	16	Unmodified	_FHQFLVSETESGNISR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.639235	1849.89588	0.019685	1.2158E-05	0.73388	0.00045327	0.75356	0.00046543	617.973819363262	8.8753	0.142	8.8753	8.831	8.973	0	705	37	0.851531465363931	0.0244500640244978	0.851531465363931	515.407471495569	0	14.798919581187						385	17	4	NaN	NaN	NaN	6.7256E-05	1	28484	81.48	64.721	1	84505			6066	1581	5168	5298	6066	6066		
FHQFLVSETESGNISR	16	Unmodified	_FHQFLVSETESGNISR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.955214	1849.89588	2.2986	0.0021284	-0.90323	-0.00083635	1.3953	0.001292	925.954174162958	8.8665	0.18635	8.8665	8.831	9.0174	0	267	40	1.14597988355104	0.0259601635966487	1.14597988355104	462.420957775378	0	10.4753354632801						344	22	4	NaN	NaN	NaN	2.5977E-06	1	28485	69.201	63.705	1	68243			6067	1581	5168	5298	6067	6067		
FHQLDIDDLQSIR	13	Unmodified	_FHQLDIDDLQSIR_			0	0	0	P16152;O75828	P16152;O75828	P16152	CBR1;CBR3	Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.942366	1598.80527	-0.52225	-0.00027885	-1.1277	-0.00060215	-1.65	-0.000881	533.941765341834	12.431	0.19506	12.431	12.387	12.582	0	729	55	0.835224628594324	0.0367158992406232	0.835224628594324	506.127183913119	0	22.2490023058459						660	23	5	NaN	NaN	NaN	6.4999E-08	1	21540	191.55	176.41	1	396460			6068	724;364	5169	5299	6068	6068		
FHQLDIDDLQSIR	13	Unmodified	_FHQLDIDDLQSIR_			0	0	0	P16152;O75828	P16152;O75828	P16152	CBR1;CBR3	Carbonyl reductase [NADPH] 1;Carbonyl reductase [NADPH] 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.409911	1598.80527	1.9554	0.0015651	1.4551	0.0011647	3.4106	0.0027299	800.411092320172	12.431	0.27486	12.431	12.378	12.653	0	360	70	1.08395544855938	0.0461069279389572	1.08395544855938	437.903971663128	0	18.6266021287949						763	32	5	NaN	NaN	NaN	2.0833E-07	1	21542	106.11	82.276	1	353910			6069	724;364	5169	5299	6069	6069		
FHTEALTALLSDDSK	15	Unmodified	_FHTEALTALLSDDSK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.945665	1646.81517	-0.40993	-0.00022544	-0.36796	-0.00020236	-0.77789	-0.0004278	550.279961665253	13.238	0.1152	13.238	13.203	13.318	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	535.604996689423	0	9.85170368084516						161	14	3	NaN	NaN	NaN	0.0025182	1	22944	63.212	55.654	1	39883			6070	1392	5170	5300	6070	6070		
FHTEALTALLSDDSK	15	Unmodified	_FHTEALTALLSDDSK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.414859	1646.81517	2.4245	0.0019988	0.076729	6.3257E-05	2.5012	0.002062	824.414977107699	13.256	0.27494	13.256	13.088	13.363	0	345	91	1.09397730668811	0.0601022219555136	1.09397730668811	441.842004210436	0	24.2744397383516						1084	32	4	NaN	NaN	NaN	0.00011545	1	22945	102.03	75.45	1	445500			6071	1392	5170	5300	6071	6071		
FHVDISLTDFIQK	13	Unmodified	_FHVDISLTDFIQK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.611958	1561.81404	-1.8832	-0.00098231	0.18409	9.6021E-05	-1.6991	-0.00088629	521.611950959645	16.466	0.17735	16.466	16.413	16.59	0	816	34	0.775960037304758	0.0225235047805306	0.775960037304758	470.309695412864	0	13.651505443187						415	21	4	NaN	NaN	NaN	3.6493E-06	1	20405	140.05	103.54	1	146730			6072	1801	5171	5301	6072	6072		
FHVDISLTDFIQK	13	Unmodified	_FHVDISLTDFIQK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.914298	1561.81404	0.83729	0.00065469	-0.019457	-1.5214E-05	0.81783	0.00063947	781.914061105859	16.466	0.1596	16.466	16.413	16.573	0	387	37	1.06589869032374	0.0240939446089616	1.06589869032374	430.696861123754	0	9.73562160210332						359	19	4	NaN	NaN	NaN	1.3857E-05	1	20407	106	94.648	1	108750			6073	1801	5171	5301	6073	6073		
FHVEEEGK	8	Unmodified	_FHVEEEGK_			0	0	0	P00558;P07205	P00558	P00558	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.732532	973.45051	1.0985	0.00053579	0.71717	0.00034979	1.8157	0.00088558	487.732949949405	2.5966	0.36357	2.5966	2.5611	2.9247	0	726	37	0.837263974740672	0.0244704573832687	0.837263974740672	340.10337614149	0	9.94009705762613						628	42	4	NaN	NaN	NaN	1.3937E-07	1	3696	113.14	75.414	1	195860			6074	484	5172	5302	6074	6074		
FHWEQDQIAHMK	12	Unmodified	_FHWEQDQIAHMK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.913754	1568.71943	-0.55702	-0.00029183	0.4717	0.00024713	-0.085321	-4.4701E-05	523.913969495926	7.6156	0.14194	7.6156	7.5713	7.7132	0	747	28	0.822982596624503	0.0183719873373771	0.822982596624503	498.790815226948	0	11.1348387911665						314	17	4	NaN	NaN	NaN	1.7439E-07	1	20615	130.79	124.1	1	106290			6075	3202	5173	5303	6075	6075		
FHWEQDQIAHMK	12	Unmodified	_FHWEQDQIAHMK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.366992	1568.71943	2.3062	0.0018112	0.65525	0.00051461	2.9614	0.0023258	785.367740241937	7.6156	0.079815	7.6156	7.5801	7.66	0	339	22	1.09798411722691	0.0140228717271516	1.09798411722691	443.644429645996	0	5.66599173137718						123	10	4	NaN	NaN	NaN	0.005683	1	20616	32.549	28.021	1	25429			6076	3202	5173	5303	6076	6076		
FIADQLDHLNVTK	13	Unmodified	_FIADQLDHLNVTK_			0	0	0	Q9BQC6	Q9BQC6	Q9BQC6	MRPL57	Ribosomal protein 63, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.271824	1512.79364	-1.3965	-0.00070559	-0.58376	-0.00029496	-1.9802	-0.0010006	505.271611476553	11.154	0.12415	11.154	11.119	11.243	0	819	46	0.773912161060781	0.0307095969464217	0.773912161060781	469.201852495362	0	18.6183917266488						318	15	4	NaN	NaN	NaN	0.00016033	1	18900	52.837	40.242	1	108420			6077	2695	5174	5304	6077	6077		
FIAHVPVPSQQEIEEALVR	19	Unmodified	_FIAHVPVPSQQEIEEALVR_			0	0	0	Q9ULR0	Q9ULR0	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.391661	2161.15315	0.33716	0.00024323	-1.3675	-0.00098653	-1.0304	-0.00074331	721.725162346301	15.739	0.25716	15.739	15.571	15.828	0	603	31	0.920633820089869	0.0202735302015807	0.920633820089869	556.63602708303	0	12.2578348308496						418	30	4	NaN	NaN	NaN	6.6335E-20	1	34194	169.05	164.75	1	104460			6078	3278	5175	5305	6078	6078		
FIASTGMDR	9	Unmodified	_FIASTGMDR_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.242209	996.469866	-0.37769	-0.00018856	0.20917	0.00010443	-0.16852	-8.4135E-05	499.242736548831	5.4697	0.24828	5.4697	5.4164	5.6647	0	738	58	0.829104889055312	0.0387529796949794	0.829104889055312	336.68069759733	0	15.7367064287212						553	29	3	NaN	NaN	NaN	0.00073814	1	4199	82.716	53.406	1	181640			6079	3288	5176	5306	6079	6079		
FIAVGYVDDTQFVR	14	Unmodified	_FIAVGYVDDTQFVR_			0	0	0	P04439	P04439	P04439	HLA-A	HLA class I histocompatibility antigen, A-3 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.417205	1628.81986	2.6648	0.0021729	0.40557	0.00033071	3.0703	0.0025036	815.918723281772	14.276	0.25711	14.276	14.205	14.462	0	333	154	1.10198982404297	0.102166946100273	1.10198982404297	445.119166987032	0	41.267591541743						1364	30	3	NaN	NaN	NaN	2.2574E-11	1	22441	150.21	137.62	1	694070			6080	514	5177	5307	6080	6080		
FIAYQFTDTPLQIK	14	Unmodified	_FIAYQFTDTPLQIK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.950881	1683.88721	1.4638	0.0012339	1.5174	0.0012791	2.9812	0.002513	843.453776958347	15.659	0.1596	15.659	15.597	15.757	0	276	58	1.13998907770044	0.0379678915865906	1.13998907770044	460.340926234456	0	15.331878806591						490	19	3	NaN	NaN	NaN	1.9697E-11	1	24022	169.81	72.53	1	205870			6081	69	5178	5308	6081	6081		
FICDASSLHQVR	12	Unmodified	_FICDASSLHQVR_			0	0	0	Q9BSH4	Q9BSH4	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.238237	1431.69288	-0.69756	-0.0003336	-1.6095	-0.00076971	-2.307	-0.0011033	478.237116015151	6.2589	0.14191	6.2589	6.2057	6.3476	0	747	40	0.822982596624503	0.0265446998138166	0.822982596624503	499.207750608512	0	16.1015797162473						217	17	3	NaN	NaN	NaN	0.0009984	1	16440	47.561	44.216	1	70263			6082	2724	5179	5309	6082	6082		
FICDASSLHQVR	12	Unmodified	_FICDASSLHQVR_			0	0	0	Q9BSH4	Q9BSH4	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.853718	1431.69288	2.1868	0.0015676	-3.1427	-0.0022528	-0.95586	-0.00068521	716.851738872307	6.2767	0.079882	6.2767	6.2411	6.321	0	414	37	1.04781950764076	0.0241205492413457	1.04781950764076	423.729613359386	0	9.75415224618587						234	10	4	NaN	NaN	NaN	0.00053106	1	16441	81.099	66.644	1	64897			6083	2724	5179	5309	6083	6083		
FICEQDHQNFLR	12	Unmodified	_FICEQDHQNFLR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.252547	1605.73581	-0.25965	-0.00013924	1.1418	0.00061231	0.88218	0.00047307	536.253484324967	7.5713	0.23055	7.5713	7.527	7.7576	0	732	73	0.833184998970724	0.0489341389555591	0.833184998970724	504.8725120459	0	29.6518800624306						770	27	5	NaN	NaN	NaN	8.7846E-06	1	21769	115.86	99.982	1	497310			6084	2415	5180	5310	6084	6084		
FICEQDHQNFLR	12	Unmodified	_FICEQDHQNFLR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.875182	1605.73581	2.6307	0.0021147	-0.23321	-0.00018747	2.3974	0.0019272	803.875234399583	7.5801	0.2128	7.5801	7.527	7.7398	0	342	55	1.09598084995137	0.0360762165045725	1.09598084995137	442.745671674758	0	14.5737844858418						713	25	5	NaN	NaN	NaN	4.6186E-11	1	21770	156.57	137.25	1	334070			6085	2415	5180	5310	6085	6085		
FICHVVGITYQHIDR	15	Unmodified	_FICHVVGITYQHIDR_			0	0	0	Q9UBQ5	Q9UBQ5	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	465.24117	1856.93557	-0.22715	-0.00010568	0.78877	0.00036697	0.56163	0.00026129	465.241700829503	8.8576	0.10653	8.8576	8.8221	8.9287	0	696	22	0.857641857947968	0.0142556031742478	0.857641857947968	692.118933877844	0	11.504304249274						228	13	4	NaN	NaN	NaN	0.0018077	1	28632	58.889	57.179	1	63256			6086	3184	5181	5311	6086	6086		
FICIYPAYLNNK	12	Unmodified	_FICIYPAYLNNK_			0	0	0	P09132	P09132	P09132	SRP19	Signal recognition particle 19 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.386862	1514.75917	1.1649	0.00088342	7.2046	0.0054639	8.3695	0.0063473	758.392458551229	13.983	0.097535	13.983	13.966	14.063	0	396	25	1.05987478976334	0.0160670595642813	1.05987478976334	428.379648437566	0	6.49397588663209						157	12	3	NaN	NaN	NaN	0.013753	1	18971	34.781	32.982	1	45362			6087	598	5182	5312	6087	6087		
FIDQVVEK	8	Unmodified	_FIDQVVEK_			0	0	0	O95453	O95453	O95453	PARN	Poly(A)-specific ribonuclease PARN	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.26875	976.522947	0.12863	6.2933E-05	-4.7557	-0.0023268	-4.6271	-0.0022639	489.266568538599	6.6668	0.19508	6.6668	6.587	6.7821	0	714	73	0.845418525735192	0.0489137434513719	0.845418525735192	343.400795736598	0	19.868287614173						508	23	3	NaN	NaN	NaN	0.033429	1	3769	43.734	14.633	1	140090			6088	435	5183	5313	6088	6088		
FIDTSQFILNR	11	Unmodified	_FIDTSQFILNR_			0	0	0	O60220	O60220	O60220	TIMM8A	Mitochondrial import inner membrane translocase subunit Tim8 A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.361702	1352.70885	1.3633	0.00092345	0.20604	0.00013956	1.5693	0.001063	677.361866714353	13.788	0.14184	13.788	13.753	13.895	0	489	67	0.997481546940468	0.0443617044097231	0.997481546940468	403.598634110596	0	17.9495283511754						423	17	2	NaN	NaN	NaN	5.6697E-05	1	13976	95.311	80.548	1	216980			6089	247	5184	5314	6089	6089		
FIEFEDSQEQEK	12	Unmodified	_FIEFEDSQEQEK_			0	0	0	O60271	O60271	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.843736	1527.67292	2.1704	0.00166	0.63488	0.00048558	2.8053	0.0021456	764.844091835389	8.3874	0.15079	8.3874	8.3342	8.485	0	423	43	1.04178812298108	0.0281600678501546	1.04178812298108	421.037181858511	0	11.3808511990388						413	18	4	NaN	NaN	NaN	0.012361	1	19343	41.796	38.693	1	117000			6090	252	5185	5315	6090	6090		
FIEIAAR	7	Unmodified	_FIEIAAR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	410.239796	818.465038	-1.495	-0.00061332	-3.782	-0.0015515	-5.2771	-0.0021649	410.238256197118	7.4826	0.23938	7.4826	7.3762	7.6156	0	837	61	0.761618911097395	0.0409718098297245	0.761618911097395	310.190404125862	0	16.6869047809463						648	28	3	NaN	NaN	NaN	0.018127	1	1193	61.494	16.728	1	283760			6091	1509	5186	5316	6091	6091		
FIFDCVSQEYGINPER	16	Unmodified	_FIFDCVSQEYGINPER_			0	0	0	A6NDG6	A6NDG6	A6NDG6	PGP	Phosphoglycolate phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.456733	1972.89891	1.7647	0.0017426	-0.085354	-8.4284E-05	1.6794	0.0016583	987.957962493628	15.384	0.11527	15.384	15.313	15.429	0	225	46	1.17390432875292	0.029896443173731	1.17390432875292	473.469043307866	0	12.058086848365						596	14	5	NaN	NaN	NaN	0.0001837	1	31162	61.067	56.512	1	236830			6092	12	5187	5317	6092	6092		
FIGFCIQK	8	Unmodified	_FIGFCIQK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.767863	1011.52117	-0.67588	-0.00034251	-2.2477	-0.001139	-2.9235	-0.0014816	507.268932060001	11.553	0.22175	11.553	11.447	11.669	0	720	58	0.841341816837976	0.0387099225361016	0.841341816837976	341.580610837756	0	15.7160368363221						518	26	3	NaN	NaN	NaN	0.0146	1	4546	51.456	39.807	1	126280			6093	1880	5188	5318	6093	6093		
FIGSPPGYVGHEEGGQLTK	19	Unmodified	_FIGSPPGYVGHEEGGQLTK_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.33029	1971.96904	0.66702	0.00043912	0.018632	1.2266E-05	0.68565	0.00045138	658.664741358475	7.9527	0.1507	7.9527	7.8818	8.0325	-8.8818E-16	654	79	0.886123392477847	0.0527989812549791	0.886123392477847	536.098048177133	0	31.9429901487935						590	18	4	NaN	NaN	NaN	2.5226E-05	1	31143	65.12	54.635	1	134760			6094	2839	5189	5319	6094	6094		
FIHGLIK	7	Unmodified	_FIHGLIK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	414.260531	826.506509	-2.2928	-0.00094983	-0.74859	-0.00031011	-3.0414	-0.0012599	414.259975050839	6.321	0.13302	6.321	6.2855	6.4185	0	792	25	0.792332785124922	0.0163659109219131	0.792332785124922	322.647756750714	0	6.66440231335974						118	16	2	NaN	NaN	NaN	0.056691	1	1262	49.406	22.928	1	27109			6095	2114	5190	5320	6095	6095		
FIHVSHLNANIK	12	Unmodified	_FIHVSHLNANIK_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.890961	1391.76737	1.6906	0.0011782	-1.0394	-0.00072435	0.65123	0.00045383	696.889934537376	6.2855	0.12419	6.2855	6.25	6.3742	0	441	31	1.02971785871157	0.0201254424104516	1.02971785871157	416.523731441408	0	8.14079730558353						243	15	4	NaN	NaN	NaN	3.4284E-07	1	15210	130.79	84.756	1	73962			6096	1907	5191	5321	6096	6096		
FIIHAPPGEFNEVFNDVR	18	Unmodified	_FIIHAPPGEFNEVFNDVR_			0	0	0	P47755	P47755	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.021568	2100.04287	-0.51063	-0.00035796	-1.6058	-0.0011257	-2.1164	-0.0014837	701.354605805502	15.34	0.25727	15.34	15.304	15.562	0	705	31	0.851531465363931	0.0203693921717962	0.851531465363931	514.950761065896	0	12.3180815130926						457	30	4	NaN	NaN	NaN	5.5075E-07	1	33317	79.795	75.723	1	100420			6097	1099	5192	5322	6097	6097		
FIIHAPPGEFNEVFNDVR	18	Unmodified	_FIIHAPPGEFNEVFNDVR_			0	0	0	P47755	P47755	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.021568	2100.04287	-0.030384	-2.13E-05	-1.6234	-0.001138	-1.6538	-0.0011593	701.354916027012	15.349	0.26613	15.349	15.304	15.571	0	660	43	0.882057989648486	0.0284617756829997	0.882057989648486	533.411214501887	0	17.2118279207461						880	31	5	NaN	NaN	NaN	4.6614E-07	1	33318	87.573	86.557	1	229030			6098	1099	5192	5322	6098	6098		
FIIPGLK	7	Unmodified	_FIIPGLK_			0	0	0	P04114	P04114	P04114	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	394.257457	786.500361	-2.768	-0.0010913	-1.0537	-0.00041543	-3.8217	-0.0015067	394.256983661462	13.327	0.12419	13.327	13.274	13.398	0	828	22	0.767766820543916	0.0143411262073633	0.767766820543916	312.90347794424	0	5.84472804482778						106	15	2	NaN	NaN	NaN	0.069782	1	881	39.761	16.452	1	18232			6099	507	5193	5323	6099	6099		
FIIPNVVK	8	Unmodified	_FIIPNVVK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.294571	928.574589	-1.0833	-0.00050404	0.011852	5.5147E-06	-1.0714	-0.00049853	465.294635311592	12.502	0.46112	12.502	12.431	12.893	0	768	115	0.808687310729125	0.0775869236901575	0.808687310729125	328.716345730029	0	31.5376409317815						1884	53	4	NaN	NaN	NaN	0.0032577	1	2859	72.355	25.552	1	2295100			6100	471	5194	5324	6100	6100		
FIIPQIVK	8	Unmodified	_FIIPQIVK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.310221	956.605889	-0.52759	-0.00025288	-0.85257	-0.00040864	-1.3802	-0.00066152	479.309857756286	13.948	0.4256	13.948	13.868	14.294	0	747	103	0.822982596624503	0.0694102015831705	0.822982596624503	334.384156461083	0	28.201898559432						2305	49	5	NaN	NaN	NaN	0.01654	1	3376	51.456	19.329	1	2998400			6101	553	5195	5325	6101	6101		
FIITALPTIYHCK	13	Unmodified	_FIITALPTIYHCK_			0	0	0	Q9H3N1	Q9H3N1	Q9H3N1	TMX1	Thioredoxin-related transmembrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.931437	1575.84832	2.6223	0.0020688	1.3156	0.0010379	3.9378	0.0031067	788.932715770147	13.895	0.15073	13.895	13.85	14.001	0	297	106	1.12600091227925	0.0700276097929586	1.12600091227925	454.946704575123	0	28.2937872937337						1106	18	4	NaN	NaN	NaN	2.0396E-07	1	20858	133.76	101.21	1	279250			6102	2880	5196	5326	6102	6102		
FILNLPTFSVR	11	Unmodified	_FILNLPTFSVR_			0	0	0	P49721	P49721	P49721	PSMB2	Proteasome subunit beta type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.87953	1305.74451	0.96636	0.00063188	-0.4323	-0.00028267	0.53406	0.00034921	653.879449516216	18.328	0.19506	18.328	18.284	18.479	0	537	49	0.965173861991602	0.0323434604594182	0.965173861991602	390.668416507422	0	13.0914946826039						666	23	5	NaN	NaN	NaN	3.3886E-05	1	12534	105.36	77.622	1	704070			6103	1143	5197	5327	6103	6103		
FILPVNEGK	9	Unmodified	_FILPVNEGK_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.792392	1015.57023	0.41633	0.00021182	-0.23416	-0.00011914	0.18216	9.2684E-05	508.792027316632	10.436	0.25718	10.436	10.294	10.551	0	669	88	0.875957769340875	0.0590261859539438	0.875957769340875	355.615475769786	0	23.9630561376061						725	30	3	NaN	NaN	NaN	0.00097899	1	4649	87.251	59.546	1	228350			6104	3376	5198	5328	6104	6104		
FILSCADDK	9	Unmodified	_FILSCADDK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.755149	1067.49575	0.45767	0.00024474	1.8875	0.0010094	2.3452	0.0012541	534.755916972547	7.5979	0.19513	7.5979	7.5447	7.7398	8.8818E-16	654	43	0.886123392477847	0.0284578263810398	0.886123392477847	359.508392416975	0	11.5456013245749						289	23	3	NaN	NaN	NaN	0.03518	1	5893	46.447	20.224	1	88265			6105	1060	5199	5329	6105	6105		
FIMESGAK	8	Unmodified	_FIMESGAK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.723121	881.431689	-0.77364	-0.00034173	0.89978	0.00039745	0.12614	5.5719E-05	441.723854050009	5.044	0.27486	5.044	4.9642	5.2391	0	777	37	0.802556497112065	0.0245283773242136	0.802556497112065	326.478541034999	0	9.97809982422592						609	32	4	NaN	NaN	NaN	0.017279	1	2025	70.67	33.062	1	256850			6106	819	5200	5330	6106	6106		
FIMGDSSVQDQWK	13	Unmodified	_FIMGDSSVQDQWK_			0	0	0	P18031	P18031	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.858666	1539.70278	1.8203	0.0014032	0.2551	0.00019664	2.0754	0.0015998	770.858683662809	11.412	0.14191	11.412	11.358	11.5	0	426	31	1.03977710643793	0.0201115556839417	1.03977710643793	420.194948633816	0	8.12748622299512						275	17	4	NaN	NaN	NaN	0.0062519	1	19708	44.598	22.554	1	63780			6107	748	5201	5331	6107	6107		
FINDQYEK	8	Unmodified	_FINDQYEK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.753464	1055.49238	1.0962	0.00057963	2.1278	0.0011251	3.224	0.0017047	528.754891965635	4.7159	0.21284	4.7159	4.6716	4.8844	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	357.085878124607	0	8.25034116727329						311	25	2	NaN	NaN	NaN	0.028342	1	5595	42.835	19.26	1	134870			6108	3215	5202	5332	6108	6108		
FINLFPETK	9	Unmodified	_FINLFPETK_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.8055	1107.59645	-0.075227	-4.1736E-05	-2.5521	-0.0014159	-2.6273	-0.0014577	554.804239022087	14.01	0.2926	14.01	13.877	14.169	0	657	37	0.884090832094921	0.0243958062014034	0.884090832094921	358.518315532851	0	9.89303703632788						366	34	2	NaN	NaN	NaN	0.0069061	1	6930	58.426	44.778	1	146000			6109	452	5203	5333	6109	6109		
FINLQPSTLTDK	12	Unmodified	_FINLQPSTLTDK_			0	0	0	Q8NBU5	Q8NBU5	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.874642	1375.73473	0.92247	0.00063546	0.18209	0.00012544	1.1046	0.0007609	688.875146636354	11.58	0.15966	11.58	11.5	11.66	0	480	40	1.00353128488872	0.0262082910405103	1.00353128488872	405.977717765923	0	10.6025415882787						238	19	2	NaN	NaN	NaN	0.060931	1	14681	36.24	9.6614	1	109820			6110	2295	5204	5334	6110	6110		
FINQLLGVVPLSTPTEDK	18	Unmodified	_FINQLLGVVPLSTPTEDK_			0	0	0	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.043498	1970.07244	1.5979	0.0015756	-0.76787	-0.00075715	0.83005	0.00081847	986.544517254882	17.752	0.10638	17.752	17.716	17.823	0	201	61	1.18983705239708	0.0398154169537526	1.18983705239708	479.899976607502	0	16.0588524506188						461	13	4	NaN	NaN	NaN	5.0124E-05	1	31121	58.338	43.945	1	112660			6111	1785	5205	5335	6111	6111		
FIPDIYIYTDHMK	13	Unmodified	_FIPDIYIYTDHMK_			0	0	0	Q9Y2P8	Q9Y2P8	Q9Y2P8	RCL1	RNA 3-terminal phosphate cyclase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.410534	1654.80652	2.293	0.0018996	0.52808	0.00043747	2.8211	0.002337	828.412748539483	13.948	0.1862	13.948	13.877	14.063	0	261	31	1.14997238118939	0.0199597456368612	1.14997238118939	464.438910308173	0	8.06113491527884						415	22	4	NaN	NaN	NaN	0.00044359	1	23191	69.276	50.464	1	90988			6112	3344	5206	5336	6112	6112		
FIPLSEPAPVPPIPNEQQLAR	21	Unmodified	_FIPLSEPAPVPPIPNEQQLAR_			0	0	0	Q99627	Q99627	Q99627	COPS8	COP9 signalosome complex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1157.13371	2312.25287	0.016478	1.9068E-05	-0.1167	-0.00013504	-0.10023	-0.00011598	1157.63555498991	15.606	0.17732	15.606	15.544	15.721	0	69	43	1.27715511956461	0.027703142560725	1.27715511956461	514.584538981746	0	11.1620026608952						380	21	3	NaN	NaN	NaN	1.9985E-05	1	35741	35.182	33.211	1	67170			6113	2661	5207	5337	6113	6113		
FIQENIFGICPHMTEDNK	18	Unmodified	_FIQENIFGICPHMTEDNK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.674963	2192.00306	0.9956	0.00072846	-1.1704	-0.00085637	-0.17482	-0.00012791	732.009079967904	13.629	0.34581	13.629	13.513	13.859	0	606	70	0.918606045818476	0.0466517682842764	0.918606045818476	555.360110544925	0	28.2041810081793						1896	40	7	NaN	NaN	NaN	5.8362E-20	1	34586	211.53	183.26	1	1933100			6114	904	5208	5338	6114	6114		
FIQENIFGICPHMTEDNK	18	Unmodified	_FIQENIFGICPHMTEDNK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1097.00881	2192.00306	1.0986	0.0012051	-0.8855	-0.00097141	0.21307	0.00023374	1097.50969591729	13.62	0.15074	13.62	13.549	13.7	0	87	88	1.26527909472281	0.0574677081054336	1.26527909472281	509.966575611791	0	23.1621706491612						1345	18	5	NaN	NaN	NaN	5.4274E-14	1	34587	102.55	89.7	1	458410			6115	904	5208	5338	6115	6115		
FIQENIFGICPHMTEDNK	18	Oxidation (M)	_FIQENIFGICPHM(Oxidation (M))TEDNK_	FIQENIFGICPHM(1)TEDNK	FIQENIFGICPHM(140)TEDNK	0	1	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.006601	2207.99797	0.24059	0.00017732	0.22645	0.0001669	0.46704	0.00034421	737.340863504931	12.157	0.23057	12.157	12.068	12.298	0	615	46	0.912521036363781	0.0304334915876326	0.912521036363781	551.656155343657	0	18.3982859505543						849	27	5	NaN	NaN	NaN	4.9121E-14	1	34758	142.32	117.58	1	321080			6116	904	5208	5339	6116	6116	307	
FIQLLSDQSDQSVLIQK	17	Unmodified	_FIQLLSDQSDQSVLIQK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.689595	1961.04696	0.15845	0.00010374	-0.48517	-0.00031763	-0.32671	-0.0002139	655.023818370914	14.905	0.070932	14.905	14.879	14.95	1.7764E-15	570	34	0.942920803299286	0.0222746380512064	0.942920803299286	570.482243397541	0	13.476514084595						247	9	4	NaN	NaN	NaN	0.037594	1	30950	34.779	34.628	1	44954			6117	429	5209	5340	6117	6117		
FIQPNIGELPTALK	14	Unmodified	_FIQPNIGELPTALK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.940316	1539.86608	1.3689	0.0010553	1.9513	0.0015043	3.3202	0.0025597	770.941709182069	14.87	0.12414	14.87	14.834	14.959	0	351	67	1.08996939197032	0.0441296375038467	1.08996939197032	440.478242960886	0	17.8336615077394						529	15	4	NaN	NaN	NaN	0.00027668	1	19727	67.548	46.46	1	140220			6118	1713	5210	5341	6118	6118		
FIQQTYPSGGEEQAQYCR	18	Unmodified	_FIQQTYPSGGEEQAQYCR_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.48401	2160.95347	2.6135	0.0028265	-2.0204	-0.002185	0.59317	0.0006415	1081.98339106145	7.2077	0.15962	7.2077	7.1545	7.3142	0	192	70	1.1958073123591	0.0457908805043117	1.1958073123591	482.00981610649	0	18.4575338042501						875	19	5	NaN	NaN	NaN	0.00012648	1	34182	54.556	50.916	1	257800			6119	2370	5211	5342	6119	6119		
FIQVHPITK	9	Unmodified	_FIQVHPITK_			0	0	0	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.821484	1081.62842	0.86826	0.00047044	0.73831	0.00040003	1.6066	0.00087047	541.821735281977	6.2411	0.12419	6.2411	6.2057	6.3299	0	645	34	0.892219381832517	0.0223457630982734	0.892219381832517	361.921343059055	0	9.06437223499444						208	15	3	NaN	NaN	NaN	0.0098725	1	6253	63.397	43.91	1	64070			6120	3047	5212	5343	6120	6120		
FITEIWHPNVDK	12	Unmodified	_FITEIWHPNVDK_			0	0	0	P62253	P62253	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.261148	1497.76161	-1.2473	-0.00062397	0.053666	2.6847E-05	-1.1936	-0.00059713	500.261244236784	11.527	0.1508	11.527	11.456	11.607	0	741	25	0.827064408645228	0.016324979319214	0.827064408645228	501.472173004292	0	9.89828938095195						242	18	4	NaN	NaN	NaN	0.06811	1	18470	32.549	18.554	1	54559			6121	1373	5213	5344	6121	6121		
FITEIWHPNVDK	12	Unmodified	_FITEIWHPNVDK_			0	0	0	P62253	P62253	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.888084	1497.76161	1.0245	0.00076827	1.2282	0.00092105	2.2528	0.0016893	749.888940149356	11.527	0.097532	11.527	11.474	11.571	0	384	25	1.06790610341098	0.0160604132229905	1.06790610341098	431.670115906951	0	6.49195693829063						152	12	2	NaN	NaN	NaN	0.00055867	1	18472	87.942	76.586	1	39021			6122	1373	5213	5344	6122	6122		
FITHAPPGEFNEVFNDVR	18	Unmodified	_FITHAPPGEFNEVFNDVR_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.009439	2088.00649	-0.11299	-7.8752E-05	-3.9654	-0.0027639	-4.0784	-0.0028427	697.341041131778	12.573	0.17734	12.573	12.485	12.662	0	651	43	0.888155670855968	0.0284420373903148	0.888155670855968	537.119022995268	0	17.2005424683689						573	21	4	NaN	NaN	NaN	0.070127	1	33149	13.345	12.402	1	104230			6123	1226	5214	5345	6123	6123		
FITHAPPGEFNEVFNDVR	18	Unmodified	_FITHAPPGEFNEVFNDVR_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.009439	2088.00649	0.11798	8.2234E-05	-0.68613	-0.00047824	-0.56815	-0.00039601	697.343075917783	13.194	0.26607	13.194	13.132	13.398	0	657	85	0.884090832094921	0.0569631094019446	0.884090832094921	534.660768672739	0	34.4488809895985						1876	31	5	NaN	NaN	NaN	3.5786E-05	1	33151	66.485	55.276	1	600960			6124	1226	5214	5345	6124	6124		
FITHAPPGEFNEVFNDVR	18	Unmodified	_FITHAPPGEFNEVFNDVR_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.01052	2088.00649	1.7108	0.0017878	0.0052518	5.4882E-06	1.7161	0.0017933	1045.51213355494	13.212	0.19511	13.212	13.15	13.345	0	162	55	1.21569043230068	0.035765079225333	1.21569043230068	490.133686893885	0	14.4195180590422						678	23	4	NaN	NaN	NaN	0.0022381	1	33152	39.82	36.567	1	125040			6125	1226	5214	5345	6125	6125		
FITPEDLSK	9	Unmodified	_FITPEDLSK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.279315	1048.54408	0.22006	0.00011559	-1.1807	-0.00062019	-0.96063	-0.0005046	525.278696869089	9.5938	0.24821	9.5938	9.4874	9.7356	0	690	43	0.86171403876517	0.0284973564255872	0.86171403876517	349.685785382042	0	11.5643009336059						568	29	4	NaN	NaN	NaN	0.0032423	1	5433	62.969	22.766	1	220100			6126	450	5215	5346	6126	6126		
FITSSASDFSDPVYK	15	Unmodified	_FITSSASDFSDPVYK_			0	0	0	Q8IV48	Q8IV48	Q8IV48	ERI1	3-5 exoribonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.396135	1662.77772	2.4272	0.0020204	-0.76741	-0.00063879	1.6598	0.0013816	832.395459962916	11.243	0.088684	11.243	11.199	11.287	0	363	40	1.08195024817156	0.0260783915787524	1.08195024817156	436.949447885542	0	10.5318509990046						202	11	2	NaN	NaN	NaN	3.0527E-08	1	23418	140.57	124.28	1	85748			6127	2195	5216	5347	6127	6127		
FIVCLNK	7	Unmodified	_FIVCLNK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.249306	892.484059	-1.7957	-0.00080312	-1.977	-0.00088423	-3.7727	-0.0016873	447.248431017787	9.2834	0.1507	9.2834	9.2303	9.381	0	804	28	0.78414869089473	0.018420624064141	0.78414869089473	318.929717608909	0	7.4920541208237						184	18	2	NaN	NaN	NaN	0.030532	1	2216	39.761	19.414	1	52930			6128	1465	5217	5348	6128	6128		
FIVDGWHEMDAENPLHQPSPSLNK	24	Unmodified	_FIVDGWHEMDAENPLHQPSPSLNK_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	921.106143	2760.2966	1.8344	0.0016897	0.20086	0.00018502	2.0353	0.0018747	921.440785236982	13.389	0.14193	13.389	13.327	13.469	0	420	52	1.04379886199097	0.0341778577956089	1.04379886199097	630.229487014208	0	20.6360579323543						630	17	4	NaN	NaN	NaN	0.032494	1	37788	15.309	15.13	1	148160			6129	1910	5218	5349	6129	6129		
FIVDGWHEMDAENPLHQPSPSLNK	24	Unmodified	_FIVDGWHEMDAENPLHQPSPSLNK_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	691.081426	2760.2966	0.8685	0.00060021	2.0858	0.0014414	2.9543	0.0020416	691.335305899091	13.398	0.21286	13.398	13.292	13.504	0	540	46	0.963152256458504	0.0303324855868733	0.963152256458504	775.380339366534	0	24.4189979418832						743	25	6	NaN	NaN	NaN	0.00042687	1	37789	36.136	31.764	1	264340			6130	1910	5218	5349	6130	6130		
FIVDLTVQEK	10	Unmodified	_FIVDLTVQEK_			0	0	0	O43324	O43324	O43324	EEF1E1	Eukaryotic translation elongation factor 1 epsilon-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.334621	1190.65469	0.7031	0.00041928	-3.3082	-0.0019728	-2.6051	-0.0015535	596.33239405066	12.671	0.19511	12.671	12.609	12.804	0	567	28	0.944945209309785	0.018214610793113	0.944945209309785	382.867403515416	0	7.38009005357776						191	23	3	NaN	NaN	NaN	0.063827	1	9190	28.096	18.017	1	55602			6131	195	5219	5350	6131	6131		
FIWSEISYLSK	11	Unmodified	_FIWSEISYLSK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.861003	1371.70745	0.51724	0.00035527	3.6312	0.0024941	4.1484	0.0028494	686.860950461711	16.626	0.15074	16.626	16.573	16.723	0	489	49	0.997481546940468	0.0322808922550346	0.997481546940468	403.542074657023	0	13.0595881922154						691	18	6	NaN	NaN	NaN	0.0057291	1	14540	55.235	35.001	1	207190			6132	1901	5220	5351	6132	6132		
FIYEGSSDFSCLPTFGVIIGQK	22	Unmodified	_FIYEGSSDFSCLPTFGVIIGQK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.406759	2464.19845	0.13536	0.00011132	1.3404	0.0011023	1.4757	0.0012136	822.742832596177	19.242	0.053192	19.242	19.215	19.268	0	405	22	1.05384839605172	0.0140654662382922	1.05384839605172	636.680307850601	0	8.49762205665354						107	7	4	NaN	NaN	NaN	0.051491	1	36644	9.1312	8.6963	1	17163			6133	1195	5221	5352	6133	6133		
FIYMAVQHYIETLQR	15	Unmodified	_FIYMAVQHYIETLQR_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.997706	1910.97129	-0.59253	-0.00037803	-0.50989	-0.00032531	-1.1024	-0.00070334	637.997300843993	16.555	0.097527	16.555	16.519	16.617	0	627	22	0.90440375274676	0.0142101719766599	0.90440375274676	547.279456597559	0	8.59896387418223						139	12	3	NaN	NaN	NaN	0.035275	1	29852	10.021	8.0373	1	26787			6134	1556	5222	5353	6134	6134		
FKPDCVNVEEVLPHWLSWLPLHEDK	25	Unmodified	_FKPDCVNVEEVLPHWLSWLPLHEDK_			0	0	1	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	772.64038	3086.53241	0.079573	6.1481E-05	1.2822	0.00099066	1.3617	0.0010521	772.891316471868	19.543	0.062089	19.543	19.516	19.579	0	516	10	0.979317271586824	0.00605894602320833	0.979317271586824	787.9763368797	0	4.87513723206735						54	8	3	NaN	NaN	NaN	0.071737	1	38337	11.68	11.239	1	9149.1			6135	74	5223	5354	6135	6135		
FLAAGTHLGGTNLDFQMEQYIYK	23	Unmodified	_FLAAGTHLGGTNLDFQMEQYIYK_			0	0	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	873.096696	2616.26826	1.2916	0.0011277	0.68416	0.00059734	1.9758	0.0017251	873.431872108403	15.704	0.3547	15.704	15.659	16.014	0	480	55	1.00353128488872	0.0363059678066375	1.00353128488872	606.083713445567	0	21.9270252156834						1213	41	7	NaN	NaN	NaN	3.4719E-33	1	37299	239.48	217.03	1	718030			6136	592	5224	5355	6136	6136		
FLAAGTHLGGTNLDFQMEQYIYK	23	Oxidation (M)	_FLAAGTHLGGTNLDFQM(Oxidation (M))EQYIYK_	FLAAGTHLGGTNLDFQM(1)EQYIYK	FLAAGTHLGGTNLDFQM(190)EQYIYK	0	1	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.428334	2632.26317	1.8957	0.0016652	-0.76646	-0.00067328	1.1292	0.00099195	878.761866051989	13.513	0.079793	13.513	13.487	13.567	0	498	64	0.991429299781895	0.0423833273901605	0.991429299781895	598.75548312823	0	25.5966307165426						401	10	4	NaN	NaN	NaN	1.6387E-19	1	37368	189.07	177.31	1	77292			6137	592	5224	5356	6137	6137	161	
FLADQQSEIDGLK	13	Unmodified	_FLADQQSEIDGLK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.372463	1462.73037	1.9009	0.0013922	-1.6081	-0.0011778	0.29278	0.00021443	732.371242866849	10.108	0.14187	10.108	10.055	10.197	0	447	58	1.02569221487577	0.0382251566582583	1.02569221487577	414.697282868866	0	15.4548005469032						410	17	4	NaN	NaN	NaN	2.4012E-07	1	17353	106	86.747	1	223890			6138	667	5225	5357	6138	6138		
FLAEEGFYK	9	Unmodified	_FLAEEGFYK_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.274032	1102.53351	1.2155	0.00067128	2.0088	0.0011094	3.2243	0.0017807	552.274978408894	9.8243	0.13298	9.8243	9.78	9.913	0	642	46	0.894250814548268	0.0304672723906905	0.894250814548268	362.658857121368	0	12.3558469336086						426	16	5	NaN	NaN	NaN	0.0086217	1	6779	65.313	44.038	1	163290			6139	1097	5226	5358	6139	6139		
FLANVSTVLTSK	12	Unmodified	_FLANVSTVLTSK_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.366453	1278.71835	1.1468	0.00073436	0.25773	0.00016504	1.4045	0.0008994	640.366770543378	12.573	0.32809	12.573	12.511	12.839	0	519	43	0.97729762293174	0.0282770433233913	0.97729762293174	395.663206097979	0	11.4480843478793						773	38	5	NaN	NaN	NaN	2.6344E-06	1	11730	125.17	105.92	1	641220		+	6140	25	5227	5359	6140	6140		
FLAQILTAFPALR	13	Unmodified	_FLAQILTAFPALR_			0	0	0	P57678	P57678	P57678	GEMIN4	Gem-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.934837	1459.85512	0.61105	0.00044663	-0.10793	-7.8889E-05	0.50312	0.00036775	730.934490057558	19.862	0.0532	19.862	19.836	19.889	0	447	34	1.02569221487577	0.0221425729106015	1.02569221487577	414.704930194143	0	8.95262147848302						127	7	3	NaN	NaN	NaN	0.004061	1	17271	57.888	53.36	1	24500			6141	1294	5228	5360	6141	6141		
FLASVSTVLTSK	12	Unmodified	_FLASVSTVLTSK_			0	0	0	P69905	P69905	P69905	HBA1	Hemoglobin subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.861003	1251.70745	0.86666	0.00054328	-2.6055	-0.0016333	-1.7388	-0.00109	626.858953232871	12.547	0.20395	12.547	12.467	12.671	0	528	34	0.971237000454584	0.0222253598495629	0.971237000454584	393.30020400864	0	9.00010868501425						356	24	4	NaN	NaN	NaN	0.00047362	1	10976	81.335	49.195	1	81994			6142	1453	5229	5361	6142	6142		
FLAVGLVDNTVR	12	Unmodified	_FLAVGLVDNTVR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.372069	1302.72959	1.3664	0.00089141	-5.1708	-0.0033733	-3.8044	-0.0024819	652.371844791573	13.389	0.23946	13.389	13.3	13.54	0	480	76	1.00353128488872	0.0503866600454252	1.00353128488872	406.204013776005	0	20.395242140845						1117	28	6	NaN	NaN	NaN	0.0006427	1	12442	97.277	74.224	1	457970			6143	1841	5230	5362	6143	6143		
FLCADYAEQDELDYHR	16	Unmodified	_FLCADYAEQDELDYHR_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.295028	2043.86326	1.2207	0.00083291	1.8656	0.0012729	3.0863	0.0021058	682.630674863806	10.002	0.15958	10.002	9.9662	10.126	0	567	31	0.944945209309785	0.0202454642733264	0.944945209309785	571.544370372761	0	12.2453460973198						379	19	5	NaN	NaN	NaN	6.9562E-10	1	32412	163.59	149.81	1	108840			6144	3269	5231	5363	6144	6144		
FLCIFLEK	8	Unmodified	_FLCIFLEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.291171	1068.56779	0.24531	0.00013131	-1.1267	-0.00060309	-0.88135	-0.00047178	535.290471384309	15.118	0.17733	15.118	15.074	15.251	0	651	55	0.888155670855968	0.0365937172301484	0.888155670855968	360.328315356611	0	14.8462177463413						605	21	4	NaN	NaN	NaN	0.013237	1	5929	34.931	16.529	1	234460			6145	1465	5232	5364	6145	6145		
FLDDLGNAK	9	Unmodified	_FLDDLGNAK_			0	0	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.756007	991.497461	0.24551	0.00012196	-0.07291	-3.6218E-05	0.1726	8.5742E-05	496.755831570165	8.4051	0.22168	8.4051	8.352	8.5736	0	696	55	0.857641857947968	0.0366547318720113	0.857641857947968	348.292698245528	0	14.8856720889476						684	26	4	NaN	NaN	NaN	0.00015649	1	4086	113.14	59.457	1	256000			6146	455	5233	5365	6146	6146		
FLDELEDEAK	10	Unmodified	_FLDELEDEAK_			0	0	0	Q9Y2R0	Q9Y2R0	Q9Y2R0	COA3	Cytochrome c oxidase assembly factor 3 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.787701	1207.56085	0.9646	0.00058338	3.6023	0.0021786	4.5669	0.002762	604.789627328979	10.658	0.16846	10.658	10.578	10.746	0	576	70	0.938871150116794	0.0465807171253665	0.938871150116794	380.345307856481	0	18.8702754291889						445	20	4	NaN	NaN	NaN	3.857E-05	1	9664	114.64	92.252	1	147170			6147	3348	5234	5366	6147	6147		
FLDGIYVSEK	10	Unmodified	_FLDGIYVSEK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.805697	1169.59684	1.2995	0.00076128	-0.14613	-8.5603E-05	1.1534	0.00067568	585.805419943641	11.456	0.3193	11.456	11.394	11.713	0	582	76	0.934820374997243	0.0506592831368379	0.934820374997243	378.843175069734	0	20.5300656507117						1150	37	5	NaN	NaN	NaN	4.3055E-05	1	8599	131.22	113.83	1	988920			6148	943	5235	5367	6148	6148		
FLDGIYVSEK	10	Unmodified	_FLDGIYVSEK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.805697	1169.59684	1.1149	0.00065313	2.0229	0.001185	3.1378	0.0018381	585.806900062741	10.356	0.16846	10.356	10.294	10.463	0	552	31	0.955063035883597	0.0202314531592178	0.955063035883597	387.046659893305	0	8.19895239984714						314	20	3	NaN	NaN	NaN	0.035081	1	8600	37.591	28.828	1	65523			6149	943	5235	5367	6149	6149		
FLDGNELTLADCNLLPK	17	Unmodified	_FLDGNELTLADCNLLPK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.996031	1931.96626	-0.21339	-0.00013764	-0.88611	-0.00057154	-1.0995	-0.00070918	645.330015675317	16.927	0.23059	16.927	16.803	17.034	0	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	577.889547357394	0	12.2399532834289						557	27	5	NaN	NaN	NaN	0.019495	1	30361	66.953	63.868	1	122610			6150	71	5236	5368	6150	6150		
FLDGNELTLADCNLLPK	17	Unmodified	_FLDGNELTLADCNLLPK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.990408	1931.96626	1.3933	0.0013473	-0.98956	-0.00095689	0.40371	0.00039039	967.490925201919	16.936	0.52319	16.936	16.661	17.184	0	228	79	1.17191150690002	0.0518098501692787	1.17191150690002	472.735238152446	0	20.8994806469682						2849	60	6	NaN	NaN	NaN	5.9516E-19	1	30362	169.52	152.76	1	1792500			6151	71	5236	5368	6151	6151		
FLDGNEMTLADCNLLPK	17	Unmodified	_FLDGNEMTLADCNLLPK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.968619	1949.92268	1.7939	0.0017508	-0.74029	-0.0007225	1.0536	0.0010283	976.46939932768	16.067	0.19506	16.067	15.952	16.147	0	246	61	1.1599488233373	0.0398975581700347	1.1599488233373	467.878901862734	0	16.0931459457778						784	23	4	NaN	NaN	NaN	1.0982E-06	1	30712	91.032	77.254	1	168830			6152	3454	5237	5369	6152	6152		
FLDLWNK	7	Unmodified	_FLDLWNK_			0	0	0	Q96GG9	Q96GG9	Q96GG9	DCUN1D1	DCN1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.252903	934.491253	-0.90633	-0.00042439	-1.4213	-0.00066553	-2.3276	-0.0010899	468.252372767477	13.558	0.21282	13.558	13.442	13.655	0	756	31	0.816857749704129	0.0204232585244036	0.816857749704129	332.006831218102	0	8.30090838740449						280	25	3	NaN	NaN	NaN	0.026348	1	2965	69.093	47.165	1	78430			6153	2542	5238	5370	6153	6153		
FLDPDMYSLLEDSTSDLR	18	Unmodified	_FLDPDMYSLLEDSTSDLR_			0	0	0	Q9UHW5	Q9UHW5	Q9UHW5	GPN3	GPN-loop GTPase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1058.9908	2115.96705	-0.053729	-5.6898E-05	1.6491	0.0017464	1.5954	0.0016895	1059.49399041357	19.277	0.079814	19.277	19.25	19.33	0	126	31	1.23951419873743	0.0198422518386323	1.23951419873743	499.695153096198	0	7.99916376946567						231	10	4	NaN	NaN	NaN	6.8371E-07	1	33556	91.993	88.908	1	47959			6154	3224	5239	5371	6154	6154		
FLDQNLQK	8	Unmodified	_FLDQNLQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.271824	1004.5291	0.88085	0.00044331	-1.0985	-0.00055283	-0.21762	-0.00010952	503.271467737	6.0106	0.14181	6.0106	5.9663	6.1081	0	699	34	0.85560534332665	0.0224016640756647	0.85560534332665	347.403975791294	0	9.09581412145968						282	17	3	NaN	NaN	NaN	0.0326	1	4384	56.091	29.868	1	169830			6155	718	5240	5372	6155	6155		
FLDTSHYSTAGSSSVR	16	Unmodified	_FLDTSHYSTAGSSSVR_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.90519	1713.79583	3.014	0.0025858	-1.5624	-0.0013404	1.4516	0.0012453	857.903754887593	6.1436	0.044338	6.1436	6.1259	6.1702	0	330	22	1.10399226369747	0.0140151480609543	1.10399226369747	445.741491665912	0	5.65867461940866						80	6	3	NaN	NaN	NaN	0.065118	1	24875	21.668	14.921	1	11928			6156	2471	5241	5373	6156	6156		
FLDVLELAEK	10	Unmodified	_FLDVLELAEK_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.829172	1175.64379	-0.27277	-0.00016061	-2.3974	-0.0014117	-2.6702	-0.0015723	588.827967419032	16.635	0.10639	16.635	16.59	16.697	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	367.317159089917	0	8.22462792214327						219	13	3	NaN	NaN	NaN	0.0094238	1	8765	33.426	19.778	1	57639			6157	3311	5242	5374	6157	6157		
FLEEATR	7	Unmodified	_FLEEATR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.224342	864.434132	-1.0852	-0.00047015	0.020675	8.9571E-06	-1.0646	-0.00046119	433.224763589306	4.7159	0.32804	4.7159	4.6539	4.9819	0	807	58	0.782101955086014	0.0388663471360342	0.782101955086014	318.253574473769	0	15.8155261246225						1009	38	4	NaN	NaN	NaN	0.0016071	1	1776	109.11	53.016	1	497550			6158	922	5243	5375	6158	6158		
FLEEFITPIVK	11	Unmodified	_FLEEFITPIVK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.381571	1334.74859	0.52915	0.00035368	-0.73057	-0.0004883	-0.20142	-0.00013463	668.38099623393	17.167	0.24828	17.167	17.096	17.344	0	513	64	0.981336640919867	0.0424067783017017	0.981336640919867	397.120160637234	0	17.1608660158594						1178	29	5	NaN	NaN	NaN	6.6511E-12	1	13444	158.57	130.47	1	797240			6159	652	5244	5376	6159	6159		
FLEEQEITDLK	11	Unmodified	_FLEEQEITDLK_			0	0	0	O60825	O60825	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.850832	1363.68711	1.2875	0.00087915	2.8669	0.0019577	4.1544	0.0028368	682.852848788103	11.483	0.14189	11.483	11.42	11.562	0	444	34	1.02770517576159	0.0221425729106015	1.02770517576159	415.793775091656	0	8.95854589222876						303	17	3	NaN	NaN	NaN	0.00034603	1	14301	97.277	75.234	1	70597			6160	284	5245	5377	6160	6160		
FLEESVSMSPEER	13	Unmodified	_FLEESVSMSPEER_			0	0	0	P15374	P15374	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.353413	1538.69227	1.751	0.0013489	-0.48502	-0.00037364	1.2659	0.00097523	770.352544836065	9.4608	0.22167	9.4608	9.3632	9.5849	0	426	64	1.03977710643793	0.042219714327189	1.03977710643793	420.197410524372	0	17.0619400288004						739	26	4	NaN	NaN	NaN	1.9608E-05	1	19679	96.946	76.763	1	253240			6161	712	5246	5378	6161	6161		
FLEETNCLYAAEGQR	15	Unmodified	_FLEETNCLYAAEGQR_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.914701	1799.81485	2.4354	0.0021941	-0.5446	-0.00049064	1.8908	0.0017034	901.415943331066	10.48	0.13304	10.48	10.401	10.534	0	324	37	1.1079963157843	0.0240210084150783	1.1079963157843	447.186566205332	0	9.69486280495857						207	16	2	NaN	NaN	NaN	0.00014672	1	27199	75.012	58.02	1	61029			6162	1696	5247	5379	6162	6162		
FLEFQYLTGGLVDPEVHGR	19	Unmodified	_FLEFQYLTGGLVDPEVHGR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.372378	2176.0953	0.36661	0.00026629	1.0674	0.00077533	1.434	0.0010416	726.707485966536	17.273	0.19511	17.273	17.211	17.406	0	471	43	1.00957851518677	0.0282184646673942	1.00957851518677	610.387247804531	0	17.0607741017682						558	23	3	NaN	NaN	NaN	3.4983E-07	1	34397	127.07	120.55	1	369510			6163	718	5248	5380	6163	6163		
FLEGTSCIAGVFVDATK	17	Unmodified	_FLEGTSCIAGVFVDATK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.953294	1813.89204	1.0972	0.00099621	0.74464	0.0006761	1.8418	0.0016723	908.45507379476	16.573	0.12413	16.573	16.537	16.661	0	255	37	1.15396378101328	0.023945110479074	1.15396378101328	465.711362036469	0	9.66365686584317						305	15	3	NaN	NaN	NaN	7.7821E-07	1	27573	104.49	96.116	1	71667			6164	1816	5249	5381	6164	6164		
FLELLPK	7	Unmodified	_FLELLPK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.268022	858.521491	-2.0749	-0.00089275	-0.45115	-0.00019411	-2.526	-0.0010869	430.267799288908	13.052	0.20393	13.052	12.946	13.15	0	771	34	0.806643990516186	0.0224733988875652	0.806643990516186	328.275556915965	0	9.14587801105307						345	24	2	NaN	NaN	NaN	0.027508	1	1693	49.058	24.239	1	113580			6165	1423	5250	5382	6165	6165		
FLEMCNDLLAR	11	Oxidation (M)	_FLEM(Oxidation (M))CNDLLAR_	FLEM(1)CNDLLAR	FLEM(52)CNDLLAR	0	1	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.33123	1396.64791	1.5575	0.0010892	4.1788	0.0029224	5.7364	0.0040116	699.335001418288	10.755	0.17734	10.755	10.658	10.835	0	468	43	1.01159370163332	0.0282145658973765	1.01159370163332	409.178372046413	0	11.4124772853414						295	21	3	NaN	NaN	NaN	0.010401	1	15332	51.872	36.724	1	70941			6166	955	5251	5383	6166	6166	340	
FLEMHQL	7	Unmodified	_FLEMHQL_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.231113	916.447674	-1.0511	-0.00048272	-0.14068	-6.4605E-05	-1.1918	-0.00054732	459.231104743712	10.56	0.31037	10.56	10.427	10.738	0	753	34	0.81889964927511	0.0224577750816375	0.81889964927511	332.931684028421	0	9.1304287211255						365	36	4	NaN	NaN	NaN	0.01214	1	2630	75.915	52.606	1	87661			6167	3450	5252	5384	6167	6167		
FLEQQNK	7	Unmodified	_FLEQQNK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q8BGZ7;CON__P04259;P02538;P04259;P48668;O95678;CON__O95678;CON__Q5XQN5;CON__P50446;CON__Q922U2;CON__P02538;CON__P48668;CON__P12035;CON__P13647;CON__Q01546;CON__Q8VED5;P13647;P12035;Q01546;CON__Q6ISB0;CON__Q9NSB2;Q9NSB2;CON__P07744;O43790;P14136;CON__Q61726;Q14533;CON__P78385;CON__Q14533;CON__Q8N1N4-2;CON__Q7RTT2;CON__O43790;Q8N1N4;P78385;CON__Q6NT21;P08729;CON__Q3KNV1;CON__P08729;CON__Q9DCV7;P08670;P78386;CON__P78386	P05787;P08729;P08670;P78386	P05787	KRT8;KRT6A;KRT6B;KRT6C;KRT75;KRT5;KRT3;KRT76;KRT84;KRT86;GFAP;KRT81;KRT78;KRT83;KRT7;VIM;KRT85	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cuticular Hb4;Keratin, type II cuticular Hb6;Glial fibrillary acidic protein;Keratin, type II cuticular Hb1;Keratin, type II cytoskeletal 78;Keratin, type II cuticular Hb3;Keratin, type II cytoskeletal 7;Vimentin;Keratin, type II cuticular Hb5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.737617	905.460681	0.029702	1.3477E-05	-0.25612	-0.00011621	-0.22642	-0.00010274	453.737887757803	2.8006	0.45219	2.8006	2.7385	3.1907	0	777	46	0.802556497112065	0.0306626079606495	0.802556497112065	326.345672134383	0	12.4684174140004						613	52	4	NaN	NaN	NaN	0.0086281	1	2422	58.687	18.484	1	303120		+	6168	28;588;39;33	5253	5385	6168	6168		
FLEQVHQLYDDSFPMEIR	18	Unmodified	_FLEQVHQLYDDSFPMEIR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.364894	2266.07285	-0.25033	-0.00018934	-0.24498	-0.0001853	-0.49531	-0.00037464	756.698928815445	16.422	0.08866	16.422	16.369	16.457	0	597	73	0.924688525662974	0.0486497581514337	0.924688525662974	558.922391102671	0	29.4060523061756						244	11	2	NaN	NaN	NaN	4.9707E-05	1	35332	40.53	32.565	1	70867			6169	1044	5254	5386	6169	6169		
FLESLPEEEQQR	12	Unmodified	_FLESLPEEEQQR_			0	0	0	P17480	P17480	P17480	UBTF	Nucleolar transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.867545	1503.72054	1.5337	0.0011547	-0.32541	-0.00024499	1.2083	0.00090969	752.867488403534	9.0794	0.15961	9.0794	9.0174	9.177	0	450	37	1.02367897599655	0.0241672134976301	1.02367897599655	413.777572845263	0	9.76854187490551						494	19	5	NaN	NaN	NaN	5.4424E-05	1	18623	92.428	81.072	1	150850			6170	737	5255	5387	6170	6170		
FLESQEFQPSIAK	13	Unmodified	_FLESQEFQPSIAK_			0	0	0	Q16537	Q16537	Q16537	PPP2R5E	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit epsilon isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.390656	1522.76676	2.1199	0.0016162	-4.7862	-0.003649	-2.6663	-0.0020328	762.387497244949	10.915	0.12413	10.915	10.871	10.995	0	423	34	1.04178812298108	0.0221181322684503	1.04178812298108	421.049383918868	0	8.93927062483527						207	15	3	NaN	NaN	NaN	0.00041851	1	19202	60	48.518	1	52262			6171	1885	5256	5388	6171	6171		
FLESTDSFNNELK	13	Unmodified	_FLESTDSFNNELK_			0	0	0	Q969G3	Q969G3	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.367378	1542.7202	2.2968	0.001774	3.7923	0.0029291	6.0892	0.0047031	772.371368191561	10.817	0.17737	10.817	10.764	10.942	0	438	73	1.03173026378327	0.0482477806442474	1.03173026378327	416.935776401847	0	19.4975630634414						400	21	2	NaN	NaN	NaN	0.00096524	1	19805	75.474	59.595	1	148070			6172	2458	5257	5389	6172	6172		
FLEVDEYPEHIK	12	Unmodified	_FLEVDEYPEHIK_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.92068	1517.74021	-0.74892	-0.00037964	0.35158	0.00017822	-0.39734	-0.00020142	507.254763820465	9.5938	0.1064	9.5938	9.5583	9.6647	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	505.122447356505	0	9.89297112543039						191	13	3	NaN	NaN	NaN	0.022668	1	19064	57.888	44.614	1	51504			6173	2572	5258	5390	6173	6173		
FLEVQYLTGGLIEPDTPGRVPLDEALQR	28	Unmodified	_FLEVQYLTGGLIEPDTPGRVPLDEALQR_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1042.88718	3125.63971	1.2854	0.0013405	-0.087118	-9.0854E-05	1.1983	0.0012497	1043.22228346002	18.639	0.05319	18.639	18.612	18.665	0	333	49	1.10198982404297	0.03205007854169	1.10198982404297	664.97429400989	0	19.3399956027097						135	7	3	NaN	NaN	NaN	0.020438	1	38389	14.646	12.397	1	22590			6174	1816	5259	5391	6174	6174		
FLEYSISDEITK	12	Unmodified	_FLEYSISDEITK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.86394	1443.71333	1.1085	0.00080132	0.33781	0.00024419	1.4463	0.0010455	722.862867800102	12.635	0.133	12.635	12.573	12.706	0	471	25	1.00957851518677	0.0161226065449527	1.00957851518677	408.232727529461	0	6.51933014195805						196	16	3	NaN	NaN	NaN	0.0013708	1	16778	57.293	36.018	1	52201			6175	2735	5260	5392	6175	6175		
FLFEGQR	7	Unmodified	_FLFEGQR_			0	0	0	P63165;G2XKQ0	P63165	P63165	SUMO1	Small ubiquitin-related modifier 1;Small ubiquitin-related modifier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.734877	895.455202	-1.3223	-0.00059334	-1.1095	-0.00049786	-2.4317	-0.0010912	448.734345246452	8.5382	0.16847	8.5382	8.4672	8.6357	0	786	28	0.796423123669906	0.0184026828244152	0.796423123669906	323.905700136167	0	7.48438071104596						234	20	3	NaN	NaN	NaN	0.020828	1	2258	75.915	51.096	1	71976			6176	47	5261	5393	6176	6176		
FLFENQTPAHVYYR	14	Unmodified	_FLFENQTPAHVYYR_			0	0	0	O15042	O15042	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.630011	1783.8682	0.72007	0.0004289	-0.6951	-0.00041402	0.024971	1.4874E-05	595.964238611733	11.021	0.20397	11.021	10.933	11.137	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	548.78903971584	0	14.7455759787543						534	24	5	NaN	NaN	NaN	9.2171E-06	1	26791	58.889	51.75	1	179320			6177	140	5262	5394	6177	6177		
FLFHMYDSDSDGR	13	Unmodified	_FLFHMYDSDSDGR_			0	0	0	Q96BS2	Q96BS2	Q96BS2	TESC	Calcineurin B homologous protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.561157	1588.66164	-1.2901	-0.00068447	0.51609	0.00027382	-0.77399	-0.00041065	530.561838682173	11.225	0.12413	11.225	11.172	11.296	0	765	28	0.810730346695089	0.018384767783428	0.810730346695089	491.31110354666	0	11.1413623345251						252	15	4	NaN	NaN	NaN	7.9688E-06	1	21225	110.88	106.36	1	61603			6178	2486	5263	5395	6178	6178		
FLFLLLGPAGK	11	Unmodified	_FLFLLLGPAGK_			0	0	0	Q9Y6M7	Q9Y6M7	Q9Y6M7	SLC4A7	Sodium bicarbonate cotransporter 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.362985	1174.71142	-0.22901	-0.00013474	0.33944	0.00019971	0.11042	6.4969E-05	588.363165737723	19.02	0.062069	19.02	18.993	19.055	0	606	28	0.918606045818476	0.0182474411105494	0.918606045818476	372.253298068687	0	7.39454107191722						103	8	2	NaN	NaN	NaN	5.5182E-05	1	8737	60.589	50.51	1	20937			6179	3471	5264	5396	6179	6179		
FLFNLPLNIER	11	Unmodified	_FLFNLPLNIER_			0	0	0	Q96KP1	Q96KP1	Q96KP1	EXOC2	Exocyst complex component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.390262	1374.76597	0.058444	4.0232E-05	-0.59324	-0.00040838	-0.53479	-0.00036815	688.38925971041	18.922	0.088678	18.922	18.887	18.976	0	516	43	0.979317271586824	0.0282692223025561	0.979317271586824	396.184740173507	0	11.4363698239467						210	11	3	NaN	NaN	NaN	0.00025744	1	14654	69.915	51.408	1	47794			6180	2576	5265	5397	6180	6180		
FLFSLFGQK	9	Unmodified	_FLFSLFGQK_			0	0	0	Q13155	Q13155	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.80276	1085.59097	-0.1168	-6.3514E-05	-0.5128	-0.00027886	-0.62959	-0.00034237	543.802707263724	17.646	0.25713	17.646	17.592	17.849	0	672	58	0.873923798053065	0.0386347449867347	0.873923798053065	354.483623807442	0	15.6711425392978						865	30	4	NaN	NaN	NaN	2.2014E-08	1	6359	182.26	133.2	1	720820			6181	1636	5266	5398	6181	6181		
FLGCVDIK	8	Unmodified	_FLGCVDIK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.252046	950.489538	-0.62695	-0.00029858	-1.0988	-0.0005233	-1.7257	-0.00082188	476.251851005475	9.5228	0.14186	9.5228	9.4696	9.6115	0	720	43	0.841341816837976	0.0285449012969368	0.841341816837976	341.874811135071	0	11.5990701335113						511	17	4	NaN	NaN	NaN	0.014287	1	3256	41.025	17.449	1	196040			6182	3300	5267	5399	6182	6182		
FLGDIEVWDQAEK	13	Unmodified	_FLGDIEVWDQAEK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.380288	1548.74602	1.7215	0.0013348	0.31193	0.00024186	2.0334	0.0015767	775.381128811971	14.941	0.41676	14.941	14.879	15.296	0	408	109	1.0518390438467	0.0723817211107871	1.0518390438467	425.047302383088	0	29.2493946483212						1465	48	5	NaN	NaN	NaN	4.4682E-11	1	19998	162.21	125.69	1	744970			6183	857	5268	5400	6183	6183		
FLGLLYELEENTDK	14	Unmodified	_FLGLLYELEENTDK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.427435	1682.84032	1.1481	0.00096721	1.2269	0.0010336	2.375	0.0020008	842.428731668489	18.488	0.070988	18.488	18.461	18.532	0	249	25	1.15795408347545	0.0159590169349364	1.15795408347545	467.597781247972	0	6.44447048131457						100	9	2	NaN	NaN	NaN	0.0041611	1	23985	64.064	59.818	1	29653			6184	1151	5269	5401	6184	6184		
FLGTTCYDR	9	Unmodified	_FLGTTCYDR_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.758223	1131.50189	1.2237	0.00069356	4.9002	0.0027772	6.1239	0.0034708	566.76245584461	6.4717	0.22166	6.4717	6.3831	6.6047	0	618	46	0.910492137470517	0.0304419315193813	0.910492137470517	369.128707747144	0	12.3416670837975						459	26	3	NaN	NaN	NaN	0.021448	1	7566	51.864	46.116	1	141620			6185	188	5270	5402	6185	6185		
FLGVAEQLHNEGFK	14	Unmodified	_FLGVAEQLHNEGFK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.275457	1587.80454	-0.047854	-2.5376E-05	-0.23732	-0.00012585	-0.28518	-0.00015122	530.275293440977	10.933	0.31036	10.933	10.871	11.181	0	765	184	0.810730346695089	0.12427972867201	0.810730346695089	491.313395858057	0	75.3151720286197						2256	36	5	NaN	NaN	NaN	2.9629E-08	1	21205	135.28	115.96	1	2072800			6186	922	5271	5403	6186	6186		
FLGVAEQLHNEGFK	14	Unmodified	_FLGVAEQLHNEGFK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.909547	1587.80454	3.0783	0.002447	0.30095	0.00023923	3.3793	0.0026862	794.909884215714	10.933	0.23055	10.933	10.879	11.11	0	342	46	1.09598084995137	0.0300572976074456	1.09598084995137	442.788427097304	0	12.1434818235985						762	27	5	NaN	NaN	NaN	8.2902E-17	1	21206	174.05	141.5	1	503800			6187	922	5271	5403	6187	6187		
FLHPEVTETMEK	12	Unmodified	_FLHPEVTETMEK_			0	0	0	P11441	P11441	P11441	UBL4A	Ubiquitin-like protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.858135	1459.70172	2.0468	0.001496	-0.46449	-0.00033948	1.5824	0.0011565	730.857930048611	7.3319	0.10642	7.3319	7.2787	7.3851	0	390	37	1.06389100039157	0.0241005916389636	1.06389100039157	430.149779279121	0	9.74429163342944						275	13	3	NaN	NaN	NaN	0.00039642	1	17251	72.922	62.22	1	62174			6188	654	5272	5404	6188	6188		
FLHQDIDSGQGIR	13	Unmodified	_FLHQDIDSGQGIR_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.375872	1484.73719	2.112	0.00157	-2.6396	-0.0019622	-0.52761	-0.00039221	743.37374896404	6.1525	0.19509	6.1525	6.0195	6.2146	0	438	37	1.03173026378327	0.0241471979634897	1.03173026378327	417.080588719642	0	9.76158972560455						310	23	4	NaN	NaN	NaN	0.0013526	1	18051	46.068	41.541	1	84089			6189	657	5273	5405	6189	6189		
FLHTLDWQEEK	11	Unmodified	_FLHTLDWQEEK_			0	0	0	O14976	O14976	O14976	GAK	Cyclin-G-associated kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.573503	1444.69868	-2.1278	-0.0010268	0.39477	0.0001905	-1.733	-0.00083631	482.573811448632	9.4253	0.088677	9.4253	9.3898	9.4785	0	777	19	0.802556497112065	0.0122641870592189	0.802556497112065	486.775723931604	0	7.43861467157285						130	11	3	NaN	NaN	NaN	0.063572	1	16812	26.947	20.256	1	29330			6190	133	5274	5406	6190	6190		
FLHTNGK	7	Unmodified	_FLHTNGK_			0	0	0		REV__Q8TEU7	REV__Q8TEU7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.72177	815.428987	-2.3655	-0.00096685	-8.9483	-0.0036574	-11.314	-0.0046242	408.718130259145	14.054	0.2128	14.054	14.01	14.223	0	834	31	0.763668499782291	0.0204944614564727	0.763668499782291	311.044251299391	0	8.34744973942236						380	25	3	NaN	NaN	NaN	0.066925	1	1158	32.971	20.418	1	116680	+		6191	3506	5275	5407	6191	6191		
FLIDGFPR	8	Unmodified	_FLIDGFPR_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.766178	963.517802	-0.60376	-0.00029147	-1.6309	-0.00078733	-2.2346	-0.0010788	482.765384306996	14.036	0.39902	14.036	13.859	14.258	0	723	37	0.839303037468863	0.0244704573832687	0.839303037468863	340.980622474203	0	9.941524596335						705	46	4	NaN	NaN	NaN	0.0042406	1	3509	73.637	55.943	1	341110			6192	902	5276	5408	6192	6192		
FLIIPLHSLMPTVNQTQVFK	20	Unmodified	_FLIIPLHSLMPTVNQTQVFK_			0	0	0	Q9H2U1	Q9H2U1	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.104575	2325.2919	0.12709	9.8633E-05	-2.1825	-0.0016939	-2.0555	-0.0015952	776.437090086348	18.541	0.079787	18.541	18.506	18.585	0	564	28	0.946969335010767	0.018214610793113	0.946969335010767	572.301121345768	0	11.0080039515291						186	10	4	NaN	NaN	NaN	1.5909E-07	1	35862	67.887	59.888	1	34297			6193	2873	5277	5409	6193	6193		
FLILPDMLK	9	Unmodified	_FLILPDMLK_			0	0	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.322471	1088.63039	0.13466	7.3432E-05	-3.2341	-0.0017636	-3.0995	-0.0016902	545.321916760873	17.566	0.31922	17.566	17.459	17.779	0	654	91	0.886123392477847	0.0609219178549639	0.886123392477847	359.419496297452	0	24.7104694614563						2373	37	6	NaN	NaN	NaN	0.0080233	1	6442	69.905	55.91	1	2185700			6194	1387	5278	5410	6194	6194		
FLILPDMLK	9	Oxidation (M)	_FLILPDM(Oxidation (M))LK_	FLILPDM(1)LK	FLILPDM(67)LK	0	1	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.319928	1104.6253	-0.57578	-0.00031859	-0.8105	-0.00044847	-1.3863	-0.00076706	553.319868758911	14.772	0.22168	14.772	14.684	14.905	0	627	52	0.90440375274676	0.0345056424959307	0.90440375274676	366.767768028864	0	13.9932606915863						628	26	4	NaN	NaN	NaN	0.035701	1	6850	67.464	46.189	1	193920			6195	1387	5278	5411	6195	6195	493	
FLILQGEVEQIAMMK	15	Unmodified	_FLILQGEVEQIAMMK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.467526	1748.9205	1.1836	0.0010362	-0.13482	-0.00011803	1.0488	0.00091819	875.969101571238	18.559	0.079806	18.559	18.532	18.612	0	231	34	1.16991841121525	0.0219270684091772	1.16991841121525	472.283326655463	0	8.85171881458893						186	10	4	NaN	NaN	NaN	0.00011678	1	25862	55.578	53.277	1	38453			6196	3042	5279	5412	6196	6196		
FLINLEGGDIR	11	Unmodified	_FLINLEGGDIR_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.843145	1245.67174	0.9273	0.00057849	-0.2244	-0.00013999	0.7029	0.0004385	623.843371900653	14.577	0.13301	14.577	14.515	14.648	0	570	46	0.942920803299286	0.0303660983099298	0.942920803299286	381.853799502949	0	12.2973318386383						358	16	3	NaN	NaN	NaN	9.5297E-06	1	10800	124.81	64.217	1	100820			6197	3037	5280	5413	6197	6197		
FLINPELIISR	11	Unmodified	_FLINPELIISR_			0	0	0	Q86W56	Q86W56	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.892638	1313.77072	0.11672	7.679E-05	-0.20334	-0.00013378	-0.086621	-5.6987E-05	657.892934905944	17.53	0.10641	17.53	17.468	17.575	0	510	28	0.983355730988811	0.0181718123582917	0.983355730988811	398.00233644573	0	7.35483970666536						205	13	3	NaN	NaN	NaN	0.0050619	1	12783	59.645	42.176	1	46123			6198	2178	5281	5414	6198	6198		
FLIPNASQAESK	12	Unmodified	_FLIPNASQAESK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.845884	1303.67722	1.8911	0.0012346	-0.3445	-0.00022491	1.5466	0.0010097	652.84632800895	9.0972	0.31037	9.0972	8.9819	9.2923	0	483	94	1.00151498427745	0.0625832085547734	1.00151498427745	405.384753748013	0	25.3319011567669						1546	36	5	NaN	NaN	NaN	1.5335E-05	1	12468	121.8	98.744	1	1160500			6199	1427	5282	5415	6199	6199		
FLIQNVLR	8	Unmodified	_FLIQNVLR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.808377	1001.6022	0.47424	0.00023798	-0.26017	-0.00013055	0.21407	0.00010742	501.808439015357	13.487	0.15073	13.487	13.434	13.584	0	645	49	0.892219381832517	0.0325051879347241	0.892219381832517	362.284781943388	0	13.1986988432974						447	18	4	NaN	NaN	NaN	0.0023609	1	4344	64.547	24.786	1	315820			6200	1036	5283	5416	6200	6200		
FLITHNPTNATLNK	14	Unmodified	_FLITHNPTNATLNK_			0	0	0	Q12974;Q93096	Q12974	Q12974	PTP4A2;PTP4A1	Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.622857	1582.84674	-0.87801	-0.00046414	-0.95141	-0.00050294	-1.8294	-0.00096708	528.622340608577	7.2432	0.13302	7.2432	7.1811	7.3142	0	825	28	0.769815552739974	0.0184385915537137	0.769815552739974	466.531107049978	0	11.1743345524509						289	16	4	NaN	NaN	NaN	0.00012508	1	21065	49.487	35.031	1	103220			6201	1613	5284	5417	6201	6201		
FLITHNPTNATLNK	14	Unmodified	_FLITHNPTNATLNK_			0	0	0	Q12974;Q93096	Q12974	Q12974	PTP4A2;PTP4A1	Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.430647	1582.84674	2.7488	0.0021782	-2.4958	-0.0019778	0.25293	0.00020043	792.428450621054	7.2432	0.10641	7.2432	7.1989	7.3053	0	345	31	1.09397730668811	0.0200395758714129	1.09397730668811	441.990954160212	0	8.09643052577223						194	13	3	NaN	NaN	NaN	0.00097903	1	21067	63.766	48.618	1	47564			6202	1613	5284	5417	6202	6202		
FLIWDTAGQER	11	Unmodified	_FLIWDTAGQER_			0	0	0	Q13636;Q9UL26	Q13636	Q13636	RAB31;RAB22A	Ras-related protein Rab-31;Ras-related protein Rab-22A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.338227	1334.6619	0.98931	0.00066119	0.77233	0.00051618	1.7616	0.0011774	668.338772459603	13.957	0.21281	13.957	13.868	14.081	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	391.397754917404	0	8.99649158427934						443	25	4	NaN	NaN	NaN	3.5322E-05	1	13424	98.009	85.413	1	141710			6203	1698	5285	5418	6203	6203		
FLLADNLYCK	10	Unmodified	_FLLADNLYCK_			0	0	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.820824	1255.62709	2.2577	0.0014197	-2.4843	-0.0015622	-0.22669	-0.00014255	628.818963639598	12.857	0.24829	12.857	12.768	13.017	0	531	88	0.969216233931596	0.058675327567968	0.969216233931596	392.468531057322	0	23.7596305279518						839	29	5	NaN	NaN	NaN	0.00059211	1	11084	100.84	83.441	1	396440			6204	1349	5286	5419	6204	6204		
FLLDAVFAK	9	Unmodified	_FLLDAVFAK_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.29731	1022.58007	-1.141	-0.00058453	-2.4406	-0.0012503	-3.5816	-0.0018348	512.295591461857	16.67	0.13301	16.67	16.608	16.741	0	699	37	0.85560534332665	0.0244364826116721	0.85560534332665	347.321108246492	0	9.91965079289116						251	16	3	NaN	NaN	NaN	0.02572	1	4813	37.722	16.448	1	66813			6205	2572	5287	5420	6205	6205		
FLLDHQGELFPSPDPSGL	18	Unmodified	_FLLDHQGELFPSPDPSGL_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.988723	1967.96289	1.1704	0.0011528	0.49361	0.0004862	1.664	0.001639	985.491232081554	17.938	0.2039	17.938	17.832	18.036	0	225	91	1.17390432875292	0.0598134788155047	1.17390432875292	473.477337489821	0	24.124901835616						1199	24	5	NaN	NaN	NaN	0.00013828	1	31071	75.012	72.623	1	293800			6206	1573	5288	5421	6206	6206		
FLLEAGADQEHK	12	Unmodified	_FLLEAGADQEHK_			0	0	0	Q8IWZ3;O75179	Q8IWZ3;O75179	Q8IWZ3	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.340966	1356.66738	2.19	0.0014878	-0.61595	-0.00041844	1.5741	0.0010693	679.340297630762	6.7555	0.14185	6.7555	6.7111	6.853	0	423	31	1.04178812298108	0.0201087800634321	1.04178812298108	421.513419405876	0	8.13612716217523						238	17	3	NaN	NaN	NaN	2.4121E-05	1	14087	78.932	69.417	1	71371			6207	2207;311	5289	5422	6207	6207		
FLLESFNNDR	10	Unmodified	_FLLESFNNDR_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.809302	1253.60405	0.62531	0.00039258	1.5836	0.00099417	2.2089	0.0013867	627.81062751601	12.334	0.11526	12.334	12.29	12.405	0	555	28	0.953040030838688	0.0182070471487186	0.953040030838688	385.92499465946	0	7.37278009975125						233	14	3	NaN	NaN	NaN	0.0064365	1	11024	49.16	31.69	1	52021			6208	1695	5290	5423	6208	6208		
FLLEYIAPMTEK	12	Unmodified	_FLLEYIAPMTEK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.883621	1453.75269	0.22258	0.00016201	-0.35781	-0.00026044	-0.13523	-9.8435E-05	727.883456048442	16.865	0.18625	16.865	16.803	16.989	0	447	40	1.02569221487577	0.026172110670738	1.02569221487577	414.721273928895	0	10.5822496469772						503	22	3	NaN	NaN	NaN	5.4335E-05	1	17081	87.942	72.794	1	258720			6209	1531	5291	5424	6209	6209		
FLLEYIAPMTEK	12	Oxidation (M)	_FLLEYIAPM(Oxidation (M))TEK_	FLLEYIAPM(1)TEK	FLLEYIAPM(50)TEK	0	1	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.881078	1469.7476	0.40143	0.0002954	-0.58684	-0.00043185	-0.18541	-0.00013644	735.880547805974	14.764	0.14191	14.764	14.666	14.808	0	435	40	1.03374239103424	0.0261540485744427	1.03374239103424	417.933344270581	0	10.5738616136234						267	17	4	NaN	NaN	NaN	0.011643	1	17577	50.297	38.941	1	62916			6210	1531	5291	5425	6210	6210	541	
FLLGYFPWDSTK	12	Unmodified	_FLLGYFPWDSTK_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.374278	1472.734	0.30534	0.00022515	-0.56008	-0.00041299	-0.25475	-0.00018784	737.374121718395	18.745	0.088662	18.745	18.71	18.798	-3.5527E-15	462	49	1.01562323939346	0.0322274067567843	1.01562323939346	410.600158199169	0	13.0290227708724						263	11	3	NaN	NaN	NaN	0.019509	1	17665	50.297	38.937	1	58977			6211	2339	5292	5426	6211	6211		
FLLHQETLPEQLLAEK	16	Unmodified	_FLLHQETLPEQLLAEK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.019164	1908.03566	-0.44363	-0.0002826	-1.13	-0.00071983	-1.5736	-0.0010024	637.352759963632	14.09	0.044314	14.09	14.072	14.116	0	684	55	0.86578508874114	0.0366140385058672	0.86578508874114	523.91605321741	0	22.1564020861529						191	6	3	NaN	NaN	NaN	0.0029316	1	29800	71.219	69.377	1	36765			6212	2369	5293	5427	6212	6212		
FLLHQETLPEQLLAEK	16	Unmodified	_FLLHQETLPEQLLAEK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.025108	1908.03566	1.7925	0.0017119	0.10727	0.00010244	1.8998	0.0018143	955.526605752283	14.09	0.1064	14.09	14.054	14.161	0	192	40	1.1958073123591	0.0258675796217427	1.1958073123591	482.417662754208	0	10.4356087918637						417	13	5	NaN	NaN	NaN	2.9076E-06	1	29802	126.32	120.12	1	146500			6213	2369	5293	5427	6213	6213		
FLLLQGLVEK	10	Unmodified	_FLLLQGLVEK_			0	0	0	Q8TED0	Q8TED0	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.357899	1158.70125	-0.42249	-0.00024519	-2.3311	-0.0013529	-2.7536	-0.0015981	580.356470093224	16.652	0.16848	16.652	16.581	16.75	0	618	49	0.910492137470517	0.0324556427464261	0.910492137470517	369.024417352007	0	13.1543416591806						452	20	4	NaN	NaN	NaN	0.00498	1	8331	47.561	8.237	1	190890			6214	2352	5294	5428	6214	6214		
FLLMLQSVK	9	Unmodified	_FLLMLQSVK_			0	0	0	Q9BXJ9;Q6N069	Q9BXJ9	Q9BXJ9	NAA15;NAA16	N-alpha-acetyltransferase 15, NatA auxiliary subunit;N-alpha-acetyltransferase 16, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.820095	1077.62564	-0.4256	-0.00022975	-1.9827	-0.0010703	-2.4083	-0.0013001	539.819892700774	14.764	0.16849	14.764	14.719	14.888	0	642	34	0.894250814548268	0.0223426636256	0.894250814548268	362.762334164189	0	9.06353863637486						329	20	4	NaN	NaN	NaN	0.0066274	1	6160	69.905	42.2	1	91825			6215	2785	5295	5429	6215	6215		
FLLPIVVR	8	Unmodified	_FLLPIVVR_			0	0	0	Q8TF05	Q8TF05	Q8TF05	PPP4R1	Serine/threonine-protein phosphatase 4 regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.818213	955.621873	-0.90447	-0.00043308	-1.7472	-0.00083658	-2.6516	-0.0012697	478.817303420878	16.174	0.088691	16.174	16.129	16.218	0	693	37	0.85967808974117	0.0244398769037869	0.85967808974117	349.298917179866	0	9.93025487141614						136	11	2	NaN	NaN	NaN	0.0069366	1	3353	44.42	34.341	1	27863			6216	2357	5296	5430	6216	6216		
FLLQDTVELR	10	Unmodified	_FLLQDTVELR_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.34552	1232.67649	1.4311	0.00088351	-0.40687	-0.00025118	1.0243	0.00063233	617.344660712495	13.877	0.24829	13.877	13.824	14.072	0	525	64	0.973257487423603	0.0424537385522985	0.973257487423603	394.184765054738	0	17.194439470723						477	29	4	NaN	NaN	NaN	0.00057622	1	10412	72.038	48.463	1	119970			6217	1457	5297	5431	6217	6217		
FLLQVFTK	8	Unmodified	_FLLQVFTK_			0	0	0	Q96IR7	Q96IR7	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.299853	994.585153	-0.96532	-0.00048102	-1.6412	-0.00081782	-2.6065	-0.0012988	498.299083958328	15.021	0.13301	15.021	14.976	15.109	0	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	344.969204935331	0	9.10083458102645						240	16	3	NaN	NaN	NaN	0.0031851	1	4160	62.88	30.753	1	67975			6218	2559	5298	5432	6218	6218		
FLLSESGSGK	10	Unmodified	_FLLSESGSGK_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.769114	1023.52368	0.088469	4.5364E-05	-0.38695	-0.00019842	-0.29848	-0.00015305	512.76867263934	7.0214	0.14196	7.0214	6.9417	7.0836	0	684	31	0.86578508874114	0.0203524260142245	0.86578508874114	351.449121860103	0	8.26168334779504						215	17	4	NaN	NaN	NaN	0.0067053	1	4833	44.82	29.239	1	57965			6219	765	5299	5433	6219	6219		
FLLSLPEHR	9	Unmodified	_FLLSLPEHR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.316566	1110.61858	1.2151	0.00067596	0.62052	0.0003452	1.8356	0.0010212	556.8181398695	10.906	0.20397	10.906	10.817	11.021	0	597	52	0.924688525662974	0.0344769526882287	0.924688525662974	374.969019783108	0	13.9806959812169						506	24	4	NaN	NaN	NaN	0.046533	1	7009	37.722	21.265	1	136510			6220	1790	5300	5434	6220	6220		
FLLVGQTMPTLLDEDLTK	18	Unmodified	_FLLVGQTMPTLLDEDLTK_			0	0	0	Q9UPU5	Q9UPU5	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.54502	2033.07548	0.17667	0.00017977	1.2235	0.001245	1.4002	0.0014248	1018.04749369241	19.25	0.070943	19.25	19.224	19.295	0	144	52	1.22760721615852	0.0337665467151151	1.22760721615852	495.026547844864	0	13.6161932196295						210	9	3	NaN	NaN	NaN	0.00014482	1	32212	39.82	36.315	1	42944			6221	3316	5301	5435	6221	6221		
FLLYDQTK	8	Unmodified	_FLLYDQTK_			0	0	0	Q9Y2S7	Q9Y2S7	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.276575	1026.5386	0.52108	0.00026798	1.7547	0.00090242	2.2758	0.0011704	514.277511856824	9.647	0.20394	9.647	9.5672	9.7711	0	666	49	0.877991458330206	0.0325277459867638	0.877991458330206	356.390167869054	0	13.2035098321706						333	24	3	NaN	NaN	NaN	0.0007404	1	4897	90.308	55.231	1	90554			6222	3351	5302	5436	6222	6222		
FLMGTNSPDSR	11	Unmodified	_FLMGTNSPDSR_			0	0	0	Q8NBJ7	Q8NBJ7	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.787512	1223.56047	1.4842	0.00090951	2.8064	0.0017197	4.2906	0.0026292	612.789930311913	6.8885	0.22163	6.8885	6.7998	7.0214	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	379.468786014763	0	6.56305513206235						308	26	3	NaN	NaN	NaN	0.000137	1	10112	92.732	78.737	1	95047			6223	2290	5303	5437	6223	6223		
FLMYDLGFR	9	Unmodified	_FLMYDLGFR_			0	0	0	O60343	O60343	O60343	TBC1D4	TBC1 domain family member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.291702	1160.56885	-0.87339	-0.00050769	-0.90821	-0.00052794	-1.7816	-0.0010356	581.291286541189	16.395	0.079824	16.395	16.369	16.448	0	612	25	0.914549654013882	0.0162300673431094	0.914549654013882	370.661915057323	0	6.57795650187302						135	10	3	NaN	NaN	NaN	0.0045833	1	8354	56.014	44.654	1	23328			6224	258	5304	5438	6224	6224		
FLNEFFLNVK	10	Unmodified	_FLNEFFLNVK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.845156	1269.67576	-0.49265	-0.00031325	-0.45075	-0.00028661	-0.9434	-0.00059986	635.844938489924	16.759	0.15073	16.759	16.706	16.856	0	552	43	0.955063035883597	0.0283240376798207	0.955063035883597	386.690863790521	0	11.4679829340396						296	18	3	NaN	NaN	NaN	0.007544	1	11506	63.397	41.354	1	61263			6225	1137	5305	5439	6225	6225		
FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR	34	Unmodified	_FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR_			0	0	0	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	907.667208	3626.63973	1.0479	0.00095111	1.1932	0.001083	2.241	0.0020341	907.918582554747	15.819	0.088667	15.819	15.783	15.872	0	384	37	1.06790610341098	0.0240839792188599	1.06790610341098	858.682206559778	0	19.3654520302255						336	11	5	NaN	NaN	NaN	8.4797E-11	1	38693	68.31	66.118	1	65407			6226	187	5306	5440	6226	6226		
FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR	34	Unmodified	_FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR_			0	0	0	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	907.667208	3626.63973	1.8408	0.0016709	1.5154	0.0013755	3.3562	0.0030464	907.919495302958	15.828	0.25717	15.828	15.748	16.005	0	276	58	1.13998907770044	0.0379626683497278	1.13998907770044	916.642701413186	0	30.5250318179728						1466	30	8	NaN	NaN	NaN	8.1232E-12	1	38694	145.27	140.39	1	941040			6227	187	5306	5440	6227	6227		
FLNEMIAPVMR	11	Unmodified	_FLNEMIAPVMR_			0	0	0	Q9UHG3	Q9UHG3	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.843776	1319.673	0.95054	0.00062816	-3.0933	-0.0020442	-2.1428	-0.0014161	660.842146253536	14.471	0.14187	14.471	14.4	14.542	0	543	43	0.961130371139249	0.028308359885891	0.961130371139249	388.988772415941	0	11.4569620228202						454	17	4	NaN	NaN	NaN	3.9416E-05	1	12966	123.5	111.44	1	134710			6228	3217	5307	5441	6228	6228		
FLNLWLK	7	Unmodified	_FLNLWLK_			0	0	0	O60566	O60566	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.281463	932.548374	-1.0345	-0.00048342	-3.5615	-0.0016642	-4.596	-0.0021476	467.280195756679	15.553	0.14189	15.553	15.508	15.65	-1.7764E-15	738	28	0.829104889055312	0.018364325465562	0.829104889055312	336.994789923394	0	7.46429322037091						164	17	3	NaN	NaN	NaN	0.0097535	1	2925	56.89	32.071	1	39549			6229	267	5308	5442	6229	6229		
FLNNFDR	7	Unmodified	_FLNNFDR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.229959	924.445365	-0.82114	-0.00038038	0.36136	0.00016739	-0.45978	-0.00021298	463.230692047616	7.4649	0.20393	7.4649	7.4117	7.6156	0	753	31	0.81889964927511	0.0204119004973387	0.81889964927511	332.889146486259	0	8.29759805213774						228	24	3	NaN	NaN	NaN	0.0063365	1	2780	84.699	62.771	1	116310			6230	1543	5309	5443	6230	6230		
FLNVPMFR	8	Unmodified	_FLNVPMFR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.275855	1022.53716	-0.17282	-8.8529E-05	-2.3976	-0.0012282	-2.5704	-0.0013168	512.274880163387	14.551	0.2394	14.551	14.435	14.675	0	720	55	0.841341816837976	0.0366751040000942	0.841341816837976	341.53121787614	0	14.8877574895322						948	28	4	NaN	NaN	NaN	0.00014749	1	4802	92.319	67.468	1	388070			6231	135	5310	5444	6231	6231		
FLPGYVGGIQEGAVTPAGVVNK	22	Unmodified	_FLPGYVGGIQEGAVTPAGVVNK_			0	0	0	Q9UBM7	Q9UBM7	Q9UBM7	DHCR7	7-dehydrocholesterol reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1087.08623	2172.1579	1.2413	0.0013494	0.11604	0.00012614	1.3574	0.0014756	1087.58770676366	13.93	0.15073	13.93	13.877	14.028	0	120	82	1.2434810169581	0.0535117422086984	1.2434810169581	501.209764482134	0	21.5689723796997						922	18	4	NaN	NaN	NaN	3.1102E-12	1	34347	131.48	122.32	1	233730			6232	3179	5311	5445	6232	6232		
FLPLFDR	7	Unmodified	_FLPLFDR_			0	0	0	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.255446	906.496338	-1.039	-0.00047195	-0.4718	-0.00021432	-1.5108	-0.00068627	454.255439806126	14.099	0.27488	14.099	14.028	14.302	0	756	46	0.816857749704129	0.0306285018586598	0.816857749704129	332.15536000932	0	12.4543362232827						897	32	4	NaN	NaN	NaN	0.0095125	1	2448	76.833	46.272	1	628270			6233	1347	5312	5446	6233	6233		
FLPLPVVQLLDR	12	Unmodified	_FLPLPVVQLLDR_			0	0	0	Q6NUM9	Q6NUM9	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.429387	1408.84422	0.61695	0.00043521	-0.81479	-0.00057478	-0.19785	-0.00013957	705.428921991003	19.915	0.070937	19.915	19.88	19.951	0	480	46	1.00353128488872	0.0302486975418772	1.00353128488872	405.882782480348	0	12.2342229979059						157	9	2	NaN	NaN	NaN	0.00035937	1	15729	51.531	44.84	1	58770			6234	2046	5313	5447	6234	6234		
FLPSELRDEH	10	Unmodified	_FLPSELRDEH_			0	0	1	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.809302	1241.60405	1.6978	0.0010557	1.0165	0.00063206	2.7143	0.0016878	621.810095099029	6.72	0.14186	6.72	6.6757	6.8175	0	525	31	0.973257487423603	0.0202034745303079	0.973257487423603	394.153368453621	0	8.18207683320077						237	17	3	NaN	NaN	NaN	0.015318	1	10667	83.623	62.348	1	57089			6235	3406	5314	5448	6235	6235		
FLQDCQELSLWINEK	15	Unmodified	_FLQDCQELSLWINEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.969476	1921.9244	0.82029	0.00078909	2.1127	0.0020323	2.9329	0.0028214	962.472870989156	16.324	0.15076	16.324	16.28	16.431	0	237	34	1.16593139812432	0.0219300818025272	1.16593139812432	470.340447210005	0	8.84666499156475						314	18	4	NaN	NaN	NaN	0.00025124	1	30103	59.77	54.155	1	53478			6236	1511	5315	5449	6236	6236		
FLQEEAEK	8	Unmodified	_FLQEEAEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.248015	992.481476	1.6501	0.00082048	0.92433	0.00045962	2.5744	0.0012801	497.248546690897	3.9711	0.22171	3.9711	3.9356	4.1573	0	675	34	0.871889544407995	0.0223736873989809	0.871889544407995	354.073947135739	0	9.08594426914158						397	26	3	NaN	NaN	NaN	0.036157	1	4111	43.734	26.04	1	105480			6237	1816	5316	5450	6237	6237		
FLQEFYQDDELGK	13	Unmodified	_FLQEFYQDDELGK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.383028	1630.7515	2.3677	0.0019329	4.1116	0.0033566	6.4793	0.0052896	816.888103788725	12.981	0.32809	12.981	12.786	13.114	0	372	46	1.07593298845566	0.030094602206975	1.07593298845566	434.58985380918	0	12.1557837838463						862	38	4	NaN	NaN	NaN	0.0002284	1	22503	99.276	77.272	1	595260			6238	952	5317	5451	6238	6238		
FLQEHGSDSFLAEHK	15	Unmodified	_FLQEHGSDSFLAEHK_			0	0	0	Q00688	Q00688	Q00688	FKBP3	Peptidyl-prolyl cis-trans isomerase FKBP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.918101	1743.82165	2.6718	0.0023323	-1.0131	-0.00088438	1.6587	0.0014479	872.917273864667	6.7909	0.070924	6.7909	6.7644	6.8353	0	282	70	1.13599383354359	0.0459484966240524	1.13599383354359	458.598892449856	0	18.5493345468216						293	9	3	NaN	NaN	NaN	0.030724	1	25710	40.53	32.156	1	56543			6239	1506	5318	5452	6239	6239		
FLQESNVLYQHNLR	14	Unmodified	_FLQESNVLYQHNLR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.640799	1759.90057	0.014038	8.2495E-06	-0.0084274	-4.9523E-06	0.005611	3.2972E-06	587.975079027676	9.4164	0.11528	9.4164	9.381	9.4962	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	536.548821956595	0	11.0764617426246						294	14	5	NaN	NaN	NaN	8.6515E-12	1	26142	136.84	119.11	1	112290			6240	1020	5319	5453	6240	6240		
FLQESNVLYQHNLR	14	Unmodified	_FLQESNVLYQHNLR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.95756	1759.90057	1.8436	0.0016242	-1.33	-0.0011716	0.51369	0.00045254	881.457684020203	9.4164	0.088677	9.4164	9.3898	9.4785	0	216	31	1.17988115188462	0.0199213775268092	1.17988115188462	476.281809457621	0	8.04164870351696						254	11	4	NaN	NaN	NaN	5.592E-08	1	26143	122.51	114.51	1	69964			6241	1020	5319	5453	6241	6241		
FLQFAYFK	8	Unmodified	_FLQFAYFK_			0	0	0	O75718	O75718	O75718	CRTAP	Cartilage-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.284203	1062.55385	-0.96872	-0.00051564	-1.7311	-0.00092144	-2.6998	-0.0014371	532.283882782689	14.852	0.23057	14.852	14.737	14.967	0	684	76	0.86578508874114	0.0508422629318454	0.86578508874114	351.277781321816	0	20.6283956057123						775	27	5	NaN	NaN	NaN	0.0097008	1	5792	49.058	21.354	1	249820			6242	355	5320	5454	6242	6242		
FLQGDSFLNEDLNQLIK	17	Unmodified	_FLQGDSFLNEDLNQLIK_			0	0	0	Q8WTT2	Q8WTT2	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.515105	1993.01566	1.2704	0.0012673	3.9742	0.0039644	5.2447	0.0052316	998.021199804171	18.577	0.18619	18.577	18.506	18.692	0	207	58	1.18585551256002	0.0378272416216301	1.18585551256002	478.255555047744	0	15.2557274019184						553	22	4	NaN	NaN	NaN	0.026865	1	31509	54.556	49.169	1	136200			6243	2361	5321	5455	6243	6243		
FLQGFMAPK	9	Unmodified	_FLQGFMAPK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.775688	1037.53682	0.20124	0.0001046	-3.0737	-0.0015976	-2.8724	-0.001493	519.775678759502	11.216	0.14188	11.216	11.163	11.305	0	681	37	0.867820189810857	0.024412742353751	0.867820189810857	352.212107141169	0	9.90811636611403						248	17	3	NaN	NaN	NaN	0.01941	1	5181	33.396	17.897	1	69011			6244	3238	5322	5456	6244	6244		
FLQLCIFPR	9	Unmodified	_FLQLCIFPR_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.328619	1192.64269	-0.16627	-9.932E-05	-1.7795	-0.001063	-1.9458	-0.0011623	597.327652808976	16.519	0.22164	16.519	16.448	16.67	0	585	28	0.932794566565362	0.0182322776363114	0.932794566565362	377.937053448422	0	7.3871070163853						246	26	2	NaN	NaN	NaN	0.0036875	1	9241	58.286	42.704	1	48253			6245	2328	5323	5457	6245	6245		
FLQLESLQELMK	12	Unmodified	_FLQLESLQELMK_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.899802	1477.78505	0.88266	0.00065308	0.1262	9.3374E-05	1.0089	0.00074645	739.899814398421	18.328	0.097516	18.328	18.293	18.39	0	405	37	1.05384839605172	0.0241072414200156	1.05384839605172	426.040417283104	0	9.7458602514435						253	12	4	NaN	NaN	NaN	1.1949E-05	1	17829	115.04	95.781	1	63909			6246	2408	5324	5458	6246	6246		
FLQLFGTK	8	Unmodified	_FLQLFGTK_			0	0	0	Q96LD4	Q96LD4	Q96LD4	TRIM47	Tripartite motif-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.276378	952.538203	-1.0143	-0.00048411	-2.2676	-0.0010823	-3.2819	-0.0015664	477.27549946956	13.77	0.13299	13.77	13.726	13.859	0	735	25	0.831145085810763	0.0163204408443606	0.831145085810763	337.721074351763	0	6.63152187259249						217	16	3	NaN	NaN	NaN	0.00035734	1	3298	101.41	56.992	1	53957			6247	2581	5325	5459	6247	6247		
FLQLLCENHNR	11	Unmodified	_FLQLLCENHNR_			0	0	0	Q14573;Q14571;Q14643	Q14573;Q14643	Q14573	ITPR3;ITPR2;ITPR1	Inositol 1,4,5-trisphosphate receptor type 3;Inositol 1,4,5-trisphosphate receptor type 2;Inositol 1,4,5-trisphosphate receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.910232	1442.70887	-1.755	-0.00084576	-0.87166	-0.00042006	-2.6267	-0.0012658	481.909861471318	9.1947	0.079829	9.1947	9.1592	9.2391	0	789	28	0.794378096728713	0.018407806217335	0.794378096728713	481.821567061793	0	11.1650586469217						180	10	3	NaN	NaN	NaN	5.6725E-06	1	16746	96.311	82.316	1	44267			6248	1758;1759	5326	5460	6248	6248		
FLQQMQQEQIIQVK	14	Unmodified	_FLQQMQQEQIIQVK_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.971822	1759.92909	1.6391	0.001444	0.12126	0.00010683	1.7604	0.0015509	880.972464679761	12.041	0.070928	12.041	12.015	12.086	0	240	40	1.16393748060522	0.0259244956409976	1.16393748060522	469.845773832043	0	10.4649218008827						267	9	4	NaN	NaN	NaN	1.2136E-09	1	26148	108.4	100.03	1	56555			6249	1030	5327	5461	6249	6249		
FLSAIVSSVDK	11	Unmodified	_FLSAIVSSVDK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.326796	1164.63904	0.17291	0.00010086	-0.37777	-0.00022037	-0.20486	-0.0001195	583.326485273126	11.873	0.16849	11.873	11.802	11.97	0	606	46	0.918606045818476	0.0304124071077684	0.918606045818476	372.290664857624	0	12.3254743571644						514	20	4	NaN	NaN	NaN	0.00038465	1	8472	76.572	57.085	1	314220			6250	1095	5328	5462	6250	6250		
FLSDPQVHTVLVER	14	Unmodified	_FLSDPQVHTVLVER_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.298262	1638.87296	-0.66095	-0.00036174	-0.43752	-0.00023946	-1.0985	-0.00060119	547.298029093663	9.9307	0.12412	9.9307	9.8864	10.01	0	750	76	0.820941264895493	0.0510049573297038	0.820941264895493	497.367445751511	0	30.9013646073316						707	15	4	NaN	NaN	NaN	1.6674E-06	1	22739	112.93	103.66	1	275670			6251	1737	5329	5463	6251	6251		
FLSDPQVHTVLVER	14	Unmodified	_FLSDPQVHTVLVER_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.443754	1638.87296	2.1151	0.0017353	-0.30154	-0.0002474	1.8136	0.0014879	820.443296029771	9.9307	0.097532	9.9307	9.8952	9.9928	0	315	52	1.11400032671325	0.034027424899137	1.11400032671325	449.947211367662	0	13.7437526509185						448	12	4	NaN	NaN	NaN	0.0031703	1	22740	47.57	44.676	1	144060			6252	1737	5329	5463	6252	6252		
FLSESVLAVAGDEEVIR	17	Unmodified	_FLSESVLAVAGDEEVIR_			0	0	0	Q9NWT1	Q9NWT1	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.483273	1832.95199	1.2174	0.001117	1.1031	0.0010121	2.3205	0.002129	917.484826521797	15.863	0.15962	15.863	15.81	15.97	0	240	58	1.16393748060522	0.0378844489628292	1.16393748060522	469.699435748344	0	15.2880241404591						535	19	4	NaN	NaN	NaN	1.2021E-13	1	28062	117.21	99.112	1	125870			6253	3083	5330	5464	6253	6253		
FLSGSWSEFSTQPENFLK	18	Unmodified	_FLSGSWSEFSTQPENFLK_			0	0	0	Q9BUR4	Q9BUR4	Q9BUR4	WRAP53	Telomerase Cajal body protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.50474	2102.99492	1.7271	0.0018178	8.6817	0.0091375	10.409	0.010955	1052.51599911319	17.397	0.33695	17.397	17.282	17.619	0	150	49	1.22363604450103	0.0317780985083107	1.22363604450103	493.313885409693	0	12.8114706301081						463	28	4	NaN	NaN	NaN	0.053347	1	33356	38.839	28.081	1	152080			6254	2750	5331	5465	6254	6254		
FLSHLVDGVK	10	Unmodified	_FLSHLVDGVK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.816399	1113.61824	1.2505	0.00069756	-0.48829	-0.00027238	0.76223	0.00042519	557.816081181748	8.281	0.16857	8.281	8.2277	8.3963	0	579	31	0.936845902828289	0.0202510727946275	0.936845902828289	379.886400945318	0	8.21171031010283						202	20	3	NaN	NaN	NaN	0.0038918	1	7090	57.032	27.931	1	45957			6255	3235	5332	5466	6255	6255		
FLSHSLVELLNQISPTFK	18	Unmodified	_FLSHSLVELLNQISPTFK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	691.717485	2072.13063	-0.25029	-0.00017313	-0.71511	-0.00049465	-0.9654	-0.00066778	692.051191109075	19.614	0.079803	19.614	19.579	19.658	0	600	31	0.922661313351899	0.0202763400038137	0.922661313351899	558.014781722862	0	12.2628935207684						176	10	3	NaN	NaN	NaN	0.00045801	1	32906	84.999	77.034	1	39735			6256	307	5333	5467	6256	6256		
FLSLFLK	7	Unmodified	_FLSLFLK_			0	0	0	O94822	O94822	O94822	LTN1	E3 ubiquitin-protein ligase listerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.270564	866.526576	-2.7406	-0.0011901	0.51229	0.00022247	-2.2283	-0.00096767	434.270338037243	15.571	0.062073	15.571	15.535	15.597	0	774	16	0.804600385996946	0.010219444721198	0.804600385996946	327.396300121459	0	4.15834798148933						53	8	2	NaN	NaN	NaN	0.027508	1	1816	49.058	11.45	1	8179.8			6257	388	5334	5468	6257	6257		
FLSLPDTWMK	10	Unmodified	_FLSLPDTWMK_			0	0	0	Q9UJX2	Q9UJX2	Q9UJX2	CDC23	Cell division cycle protein 23 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.317917	1236.62128	0.43663	0.00027041	-0.45654	-0.00028274	-0.019912	-1.2332E-05	619.317330918663	16.218	0.2217	16.218	16.094	16.315	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.424089387426	0	9.02376343012162						328	26	2	NaN	NaN	NaN	0.00071012	1	10520	50.834	36.84	1	82348			6258	3252	5335	5469	6258	6258		
FLSLYGDQIDMHR	13	Unmodified	_FLSLYGDQIDMHR_			0	0	0	Q96CN7	Q96CN7	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.260931	1593.76096	-1.548	-0.00082396	-0.62649	-0.00033346	-2.1745	-0.0011574	532.260684178863	11.926	0.10641	11.926	11.873	11.979	0	729	28	0.835224628594324	0.0183566683857203	0.835224628594324	506.140922167788	0	11.1240266948468						288	13	4	NaN	NaN	NaN	0.00023914	1	21390	74.849	70.02	1	107410			6259	2493	5336	5470	6259	6259		
FLSLYGDQIDMHR	13	Unmodified	_FLSLYGDQIDMHR_			0	0	0	Q96CN7	Q96CN7	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.887758	1593.76096	0.84062	0.00067072	2.84	0.002266	3.6807	0.0029367	797.890122293352	11.917	0.088677	11.917	11.882	11.97	0	312	28	1.11600111266355	0.0180070752591535	1.11600111266355	450.862254844967	0	7.27482299289829						242	11	4	NaN	NaN	NaN	2.4165E-07	1	21394	106.35	67.06	1	66845			6260	2493	5336	5470	6260	6260		
FLSNGHVTIPGQQDK	15	Unmodified	_FLSNGHVTIPGQQDK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.617883	1639.83182	-1.3264	-0.00072636	0.54325	0.00029749	-0.78315	-0.00042887	547.618000185299	7.5092	0.097558	7.5092	7.456	7.5536	0	768	28	0.808687310729125	0.0183873254729269	0.808687310729125	489.940982351443	0	11.139910550716						184	12	3	NaN	NaN	NaN	0.042983	1	22759	29.131	27.874	1	40109			6261	972	5337	5471	6261	6261		
FLSPEFIPR	9	Unmodified	_FLSPEFIPR_			0	0	0	P49406	P49406	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.305667	1104.59678	0.51629	0.00028567	-1.9134	-0.0010587	-1.3971	-0.00077303	553.305400890151	12.963	0.16849	12.963	12.893	13.061	0	651	55	0.888155670855968	0.0365835629359025	0.888155670855968	360.178714599216	0	14.8359359806979						446	20	3	NaN	NaN	NaN	0.0080233	1	6844	60.589	38.203	1	177320			6262	1130	5338	5472	6262	6262		
FLSPQDTFEALK	12	Unmodified	_FLSPQDTFEALK_			0	0	0	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.361367	1394.70818	1.4797	0.0010334	-0.27629	-0.00019295	1.2034	0.0008404	698.361266684446	14.542	0.24829	14.542	14.373	14.622	0	444	52	1.02770517576159	0.034215621891726	1.02770517576159	415.70096963061	0	13.8400268212762						647	29	3	NaN	NaN	NaN	5.9771E-05	1	15287	54.584	37.931	1	142510			6263	3047	5339	5473	6263	6263		
FLSPVVPNYDNVHPNYHK	18	Unmodified	_FLSPVVPNYDNVHPNYHK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.53416	2139.05377	1.6915	0.0018108	-2.0375	-0.0021812	-0.34598	-0.00037038	1071.03442621678	9.6026	0.079801	9.6026	9.576	9.6558	0	150	31	1.22363604450103	0.0198585839461511	1.22363604450103	493.25936068766	0	8.00518460163136						144	10	3	NaN	NaN	NaN	0.015684	1	33864	23.432	20.717	1	21998			6264	3329	5340	5474	6264	6264		
FLSPVVPNYDNVHPNYHK	18	Unmodified	_FLSPVVPNYDNVHPNYHK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.025201	2139.05377	1.3137	0.00093802	0.22882	0.00016338	1.5425	0.0011014	714.359735703187	9.6115	0.1064	9.6115	9.5583	9.6647	0	621	118	0.908462957275599	0.0790395169406465	0.908462957275599	549.313448578867	0	47.7922289257446						961	13	3	NaN	NaN	NaN	0.0039474	1	33868	46.358	36.337	1	231760			6265	3329	5340	5474	6265	6265		
FLSQIESDCLALLQVR	16	Unmodified	_FLSQIESDCLALLQVR_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.500943	1890.98733	1.3104	0.0012403	-1.9254	-0.0018224	-0.61501	-0.00058211	946.499427589543	17.628	0.1064	17.628	17.575	17.681	0	234	37	1.16792504164217	0.0239253701755411	1.16792504164217	471.199952011848	0	9.65270276483602						272	13	4	NaN	NaN	NaN	7.6866E-09	1	29399	119.43	103.9	1	55849			6266	1223	5341	5475	6266	6266		
FLSQPFQVAEVFTGHMGK	18	Unmodified	_FLSQPFQVAEVFTGHMGK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.00894	2022.00332	0.99862	0.0010106	-2.8484	-0.0028826	-1.8497	-0.001872	1012.5080495068	17.105	0.23943	17.105	17.043	17.282	0	129	160	1.23753038177212	0.105315820834165	1.23753038177212	499.046562397584	0	42.4696630705006						2917	28	6	NaN	NaN	NaN	3.1992E-05	1	32020	95.345	83.327	1	762990			6267	541	5342	5476	6267	6267		
FLSQPFQVAEVFTGHMGK	18	Unmodified	_FLSQPFQVAEVFTGHMGK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.008382	2022.00332	0.51318	0.0003464	0.88619	0.00059818	1.3994	0.00094458	675.343769188172	17.096	0.36354	17.096	17.016	17.38	0	546	64	0.959108205975751	0.042471368758535	0.959108205975751	580.153048658759	0	25.6904214899371						1868	42	7	NaN	NaN	NaN	2.9048E-26	1	32022	263.12	201.93	1	2880200			6268	541	5342	5476	6268	6268		
FLSQPFQVAEVFTGHMGK	18	Oxidation (M)	_FLSQPFQVAEVFTGHM(Oxidation (M))GK_	FLSQPFQVAEVFTGHM(1)GK	FLSQPFQVAEVFTGHM(180)GK	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.340021	2037.99823	1.497	0.0010185	-1.088	-0.00074018	0.40909	0.00027832	680.673840214533	15.571	0.20393	15.571	15.5	15.704	0	537	61	0.965173861991602	0.0404181457297914	0.965173861991602	583.790883894379	0	24.4471446546198						994	24	6	NaN	NaN	NaN	4.8672E-14	1	32305	181.9	153.67	1	774960			6269	541	5342	5477	6269	6269	108	
FLSQPFQVAEVFTGHMGK	18	Oxidation (M)	_FLSQPFQVAEVFTGHM(Oxidation (M))GK_	FLSQPFQVAEVFTGHM(1)GK	FLSQPFQVAEVFTGHM(82)GK	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.00639	2037.99823	1.2064	0.0012305	1.3073	0.0013334	2.5137	0.002564	1020.50839916101	15.588	0.088725	15.588	15.544	15.633	0	114	52	1.24744674793813	0.0337064148139927	1.24744674793813	503.018499701085	0	13.5917226431199						420	11	4	NaN	NaN	NaN	0.0018845	1	32308	81.908	76.814	1	102030			6270	541	5342	5477	6270	6270	108	
FLSSSLYTALTEAR	14	Unmodified	_FLSSSLYTALTEAR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.909213	1557.80387	1.2661	0.00098748	1.1549	0.0009007	2.421	0.0018882	779.910147893557	15.624	0.12414	15.624	15.571	15.695	0	369	55	1.07793901817685	0.0361160163121792	1.07793901817685	435.571835623176	0	14.5937008079538						378	15	4	NaN	NaN	NaN	9.5158E-12	1	20297	168.69	155.41	1	91945			6271	1901	5343	5478	6271	6271		
FLSTLLDSFSSSR	13	Unmodified	_FLSTLLDSFSSSR_			0	0	0	O94822	O94822	O94822	LTN1	E3 ubiquitin-protein ligase listerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.375006	1458.73546	-0.2163	-0.00015798	2.7862	0.002035	2.5699	0.001877	730.376963998689	16.759	0.15074	16.759	16.697	16.847	0	444	31	1.02770517576159	0.0201310011285361	1.02770517576159	415.521787663471	0	8.13936698351824						279	18	4	NaN	NaN	NaN	0.00047059	1	17235	67.548	58.571	1	65359			6272	388	5344	5479	6272	6272		
FLSYALIDPTHEGTAEGMENMADAVTHAR	29	Unmodified	_FLSYALIDPTHEGTAEGMENMADAVTHAR_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	787.61821	3146.44373	1.4133	0.0011132	2.073	0.0016327	3.4863	0.0027459	787.870261169056	16.111	0.070925	16.111	16.076	16.147	0	363	19	1.08195024817156	0.0120320319459946	1.08195024817156	870.482319575103	0	9.68036293281602						159	9	4	NaN	NaN	NaN	0.00039042	1	38413	31.674	27.234	1	34218			6273	2408	5345	5480	6273	6273		
FLTALAQDGVINEEALSVTELDR	23	Unmodified	_FLTALAQDGVINEEALSVTELDR_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1252.64758	2503.2806	0.49217	0.00061651	0.92471	0.0011583	1.4169	0.0017748	1253.1495741293	18.381	0.044318	18.381	18.364	18.408	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.14660684496	0	9.56306677652702						120	6	4	NaN	NaN	NaN	0.00014078	1	36845	39.48	36.575	1	18560			6274	2370	5346	5481	6274	6274		
FLTALAQDGVINEEALSVTELDR	23	Unmodified	_FLTALAQDGVINEEALSVTELDR_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	835.434143	2503.2806	1.7864	0.0014925	1.8631	0.0015565	3.6495	0.0030489	835.769755953151	18.39	0.062056	18.39	18.364	18.426	0	366	40	1.07994477139643	0.0260676102408008	1.07994477139643	652.389263918237	0	15.7473136659698						250	8	4	NaN	NaN	NaN	1.2666E-06	1	36846	96.453	91.619	1	47638			6275	2370	5346	5481	6275	6275		
FLTAVNLEHPEMLEK	15	Unmodified	_FLTAVNLEHPEMLEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.95838	1769.90221	2.5398	0.0022501	-4.3307	-0.0038368	-1.7909	-0.0015866	886.453272282044	12.715	0.14191	12.715	12.653	12.795	0	219	112	1.17788915118882	0.0738257891049421	1.17788915118882	475.45670864399	0	29.7998896292191						734	17	4	NaN	NaN	NaN	2.4603E-12	1	26409	121.86	104.87	1	196620			6276	3345	5347	5482	6276	6276		
FLTAVNLEHPEMLEK	15	Unmodified	_FLTAVNLEHPEMLEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.974679	1769.90221	1.2597	0.00074445	-1.936	-0.0011441	-0.67632	-0.00039969	591.307491262689	12.715	0.17736	12.715	12.635	12.813	0	597	49	0.924688525662974	0.0324421500815294	0.924688525662974	559.875363293023	0	19.6428960226151						672	21	4	NaN	NaN	NaN	9.2694E-05	1	26411	80.623	78.486	1	296850			6277	3345	5347	5482	6277	6277		
FLTDGMLLR	9	Unmodified	_FLTDGMLLR_			0	0	0	Q9H6R0	Q9H6R0	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.291702	1064.56885	-0.053273	-2.841E-05	-0.64975	-0.00034651	-0.70303	-0.00037492	533.291282283094	14.205	0.079803	14.205	14.169	14.249	1.7764E-15	654	28	0.886123392477847	0.018290507163651	0.886123392477847	359.520994353133	0	7.42088672810127						186	10	3	NaN	NaN	NaN	0.0054324	1	5833	62.88	41.605	1	43639			6278	2905	5348	5483	6278	6278		
FLTEVLLPIVK	11	Unmodified	_FLTEVLLPIVK_			0	0	0	Q9ULK4	Q9ULK4	Q9ULK4	MED23	Mediator of RNA polymerase II transcription subunit 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.402307	1270.79006	-0.32746	-0.0002084	-2.4682	-0.0015708	-2.7956	-0.0017792	636.400444944353	18.195	0.079789	18.195	18.169	18.248	0	552	31	0.955063035883597	0.0202314531592178	0.955063035883597	386.687223822957	0	8.19133833276697						130	10	2	NaN	NaN	NaN	0.0051759	1	11533	46.447	33.173	1	32247			6279	3277	5349	5484	6279	6279		
FLTGPLNLNDPDAK	14	Unmodified	_FLTGPLNLNDPDAK_			0	0	0	P86791;P86790	P86791	P86791	CCZ1;CCZ1B	Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.896106	1513.77766	2.5088	0.0019014	6.9497	0.0052671	9.4584	0.0071685	757.901254406345	12.919	0.23943	12.919	12.857	13.096	0	435	46	1.03374239103424	0.0301777503680323	1.03374239103424	417.819922947993	0	12.1972992912675						364	28	2	NaN	NaN	NaN	0.0059868	1	18930	58.476	50.475	1	247210			6280	1488	5350	5485	6280	6280		
FLTINIMNK	9	Unmodified	_FLTINIMNK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.307352	1092.60015	-0.19159	-0.00010486	-2.3883	-0.0013071	-2.5798	-0.001412	547.307308181614	13.389	0.10646	13.389	13.318	13.425	0	636	31	0.898312834727904	0.0203044701825483	0.898312834727904	364.347092385692	0	8.23529887078178						195	13	3	NaN	NaN	NaN	0.0056208	1	6533	65.156	44.922	1	44655			6281	1942	5351	5486	6281	6281		
FLTLPPVLHLQLMR	14	Unmodified	_FLTLPPVLHLQLMR_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.000611	1676.98	-0.51777	-0.00028995	-0.54248	-0.00030379	-1.0603	-0.00059374	560.334750762534	18.355	0.1064	18.355	18.319	18.426	0	699	97	0.85560534332665	0.0650826443685285	0.85560534332665	518.270053458313	0	39.4228318455091						460	13	4	NaN	NaN	NaN	7.9397E-06	1	23835	99.855	95.609	1	112530			6282	2452	5352	5487	6282	6282		
FLTPCYHPNVDTQGNICLDILK	22	Unmodified	_FLTPCYHPNVDTQGNICLDILK_			0	0	0	O00762	O00762	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	873.429569	2617.26688	0.99815	0.00087182	1.7602	0.0015374	2.7584	0.0024092	873.765342802755	15.216	0.070921	15.216	15.18	15.251	0	480	34	1.00353128488872	0.0221854416206791	1.00353128488872	606.082487870579	0	13.398892345902						201	9	4	NaN	NaN	NaN	0.012239	1	37303	13.525	12.43	1	32600			6283	98	5353	5488	6283	6283		
FLTPIYHPNIDSAGR	15	Unmodified	_FLTPIYHPNIDSAGR_			0	0	0	Q9NPD8	Q9NPD8	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.941379	1699.8682	2.4541	0.0020883	-0.9853	-0.00083843	1.4688	0.0012499	851.442115558263	10.454	0.088708	10.454	10.418	10.507	0	339	28	1.09798411722691	0.0180294071906015	1.09798411722691	443.344814704441	0	7.27992697229178						179	11	3	NaN	NaN	NaN	0.0036651	1	24495	23.931	18.837	1	32522			6284	2986	5354	5489	6284	6284		
FLTPIYHPNIDSAGR	15	Unmodified	_FLTPIYHPNIDSAGR_			0	0	0	Q9NPD8	Q9NPD8	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.630011	1699.8682	1.4469	0.00082128	0.89651	0.00050889	2.3434	0.0013302	567.630508122458	10.454	0.15962	10.454	10.347	10.507	0	582	52	0.934820374997243	0.0344578460236871	0.934820374997243	566.190942346228	0	20.8700204158796						456	19	4	NaN	NaN	NaN	0.0014466	1	24496	51.454	49.47	1	108670			6285	2986	5354	5489	6285	6285		
FLTVMMK	7	Unmodified	_FLTVMMK_			0	0	0	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.23481	868.455067	-2.6516	-0.0011541	-0.32457	-0.00014126	-2.9761	-0.0012953	435.234973385273	10.356	0.133	10.356	10.312	10.445	0	798	31	0.788241307691771	0.0204573895443732	0.788241307691771	320.728604281091	0	8.32393574375715						222	16	4	NaN	NaN	NaN	0.036921	1	1837	35.633	22.081	1	63238			6286	1371	5355	5490	6286	6286		
FLVGFTNK	8	Unmodified	_FLVGFTNK_			0	0	0	P43307	P43307	P43307	SSR1	Translocon-associated protein subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.260728	924.506903	-1.0232	-0.00047401	-2.0437	-0.00094678	-3.0669	-0.0014208	463.260182918027	10.294	0.15074	10.294	10.25	10.401	0	750	40	0.820941264895493	0.0265336280455829	0.820941264895493	333.718765801133	0	10.7861183037566						472	18	4	NaN	NaN	NaN	0.001484	1	2785	75.243	23.787	1	150520			6287	1065	5356	5491	6287	6287		
FLVHNVK	7	Unmodified	_FLVHNVK_			0	0	0	P62910	P62910	P62910	RPL32	60S ribosomal protein L32	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.755613	855.496673	0.37664	0.00016148	1.7685	0.00075824	2.1451	0.00091973	428.756618335436	3.6785	0.28373	3.6785	3.6342	3.9179	0	756	70	0.816857749704129	0.0470029339692972	0.816857749704129	332.450668144651	0	19.1295936269341						709	33	4	NaN	NaN	NaN	0.0091166	1	1645	79.833	35.099	1	446310			6288	1414	5357	5492	6288	6288		
FLVMASEDALCTVLHLTER	19	Unmodified	_FLVMASEDALCTVLHLTER_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.706263	2204.09696	0.1889	0.00013897	0.29438	0.00021658	0.48328	0.00035555	735.706708438669	19.72	0.070933	19.72	19.703	19.774	0	513	22	0.981336640919867	0.0141355861424926	0.981336640919867	593.264552016852	0	8.54563238611024						149	9	4	NaN	NaN	NaN	0.00012883	1	34725	59.997	55.18	1	30269			6289	2420	5358	5493	6289	6289		
FLVPDHVNMSELIK	14	Unmodified	_FLVPDHVNMSELIK_			0	0	0	A6NCE7;Q9GZQ8	A6NCE7	A6NCE7	MAP1LC3B2;MAP1LC3B	Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.960481	1640.85961	-0.13352	-7.3161E-05	-0.74425	-0.00040782	-0.87776	-0.00048098	547.960271151368	14.631	0.13302	14.631	14.577	14.71	0	663	103	0.880024865079826	0.0690161417699292	0.880024865079826	533.157854740962	0	41.8130209141486						430	16	4	NaN	NaN	NaN	0.0051348	1	22781	43.613	39.085	1	106360			6290	11	5359	5494	6290	6290		
FLVQEIMFDR	10	Unmodified	_FLVQEIMFDR_			0	0	0	P42695	P42695	P42695	NCAPD3	Condensin-2 complex subunit D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.334098	1296.65364	0.16102	0.00010456	0.53497	0.00034738	0.69599	0.00045193	649.334634250603	16.324	0.097524	16.324	16.28	16.377	0	537	34	0.965173861991602	0.0222345870481429	0.965173861991602	390.697087478889	0	9.00043892929295						213	12	3	NaN	NaN	NaN	3.3813E-07	1	12255	122.44	90.295	1	56226			6291	1053	5360	5495	6291	6291		
FLVQNIHTLAELK	13	Unmodified	_FLVQNIHTLAELK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.296081	1524.86641	0.40993	0.00020877	0.00080746	4.1124E-07	0.41073	0.00020918	509.29632534208	12.786	0.19513	12.786	12.733	12.928	0	702	55	0.853568545818287	0.0366547318720113	0.853568545818287	517.458245010329	0	22.2211717134348						634	23	5	NaN	NaN	NaN	0.00019228	1	19279	112.93	95.456	1	575470			6292	2348	5361	5496	6292	6292		
FLVQNIHTLAELK	13	Unmodified	_FLVQNIHTLAELK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.440483	1524.86641	2.6443	0.0020188	0.29209	0.00022299	2.9364	0.0022417	763.440699706003	12.795	0.15075	12.795	12.742	12.893	0	294	43	1.12800004657306	0.0279859609320023	1.12800004657306	455.887143618012	0	11.3106731063148						517	18	5	NaN	NaN	NaN	5.0682E-17	1	19280	192.95	168.82	1	249890			6293	2348	5361	5496	6293	6293		
FLYDDNQR	8	Unmodified	_FLYDDNQR_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.748713	1069.48287	1.8413	0.00098646	1.0446	0.00055963	2.8858	0.0015461	535.749278949455	5.9929	0.23061	5.9929	5.9396	6.1702	0	615	40	0.912521036363781	0.0263756909350701	0.912521036363781	370.209400464439	0	10.7006067134818						465	27	3	NaN	NaN	NaN	3.7305E-05	1	5943	108.92	95.277	1	160660			6294	652;1534	5362	5497	6294	6294		
FLYEELGLDSTSVFEDLK	18	Unmodified	_FLYEELGLDSTSVFEDLK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.01989	2104.02522	1.2378	0.0013035	-0.17698	-0.00018637	1.0609	0.0011171	1053.521730917	19.561	0.053225	19.561	19.534	19.587	0	126	28	1.23951419873743	0.0178543543654297	1.23951419873743	499.713652110039	0	7.19803341914411						158	7	4	NaN	NaN	NaN	8.8347E-07	1	33371	66.485	64.096	1	28671			6295	1942	5363	5498	6295	6295		
FLYGCQAPTICFVYQDPQGR	20	Unmodified	_FLYGCQAPTICFVYQDPQGR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1210.56174	2419.10892	0.2829	0.00034247	-1.1239	-0.0013606	-0.84102	-0.0010181	1211.06267916217	15.677	0.13298	15.677	15.615	15.748	0	66	55	1.27913350869533	0.0356329655820204	1.27913350869533	515.245624346999	0	14.3532551323508						437	16	4	NaN	NaN	NaN	0.012062	1	36437	40.83	39.887	1	80776			6296	1884	5364	5499	6296	6296		
FLYQLHETEK	10	Unmodified	_FLYQLHETEK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.559194	1306.65575	-1.8776	-0.00081967	-0.33541	-0.00014642	-2.213	-0.00096609	436.559022499891	6.7289	0.15958	6.7289	6.6934	6.853	0	822	40	0.771863999559055	0.0266335239759634	0.771863999559055	468.627880654448	0	16.1702215705686						363	19	4	NaN	NaN	NaN	0.0057548	1	12558	48.157	34.163	1	136740			6297	350	5365	5500	6297	6297		
FLYQLHETEK	10	Unmodified	_FLYQLHETEK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.335153	1306.65575	1.8705	0.0012239	-1.5719	-0.0010285	0.29858	0.00019537	654.33343522626	6.7377	0.26599	6.7377	6.6845	6.9505	0	489	49	0.997481546940468	0.0322808922550346	0.997481546940468	403.74248741158	0	13.0660740290273						518	31	4	NaN	NaN	NaN	0.0001213	1	12560	103.8	75.708	1	275210			6298	350	5365	5500	6298	6298		
FLYSELMK	8	Unmodified	_FLYSELMK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.767529	1029.5205	0.29	0.00014957	-0.66453	-0.00034274	-0.37452	-0.00019317	515.767236624734	12.29	0.10643	12.29	12.254	12.361	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	367.097265355745	0	9.88715338137979						292	13	4	NaN	NaN	NaN	0.019378	1	4974	42.835	19.26	1	95332			6299	1273	5366	5501	6299	6299		
FMADIDLDPGCTLNK	15	Unmodified	_FMADIDLDPGCTLNK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.397298	1708.78004	2.4981	0.0021368	-0.46065	-0.00039404	2.0374	0.0017428	855.397523516777	14.001	0.27489	14.001	13.85	14.125	0	330	58	1.10399226369747	0.0380516101948882	1.10399226369747	445.751984411666	0	15.363858345912						1313	32	6	NaN	NaN	NaN	4.7006E-12	1	24715	183.08	161.93	1	520770			6300	857	5367	5502	6300	6300		
FMADIDLDPGCTLNK	15	Oxidation (M)	_FM(Oxidation (M))ADIDLDPGCTLNK_	FM(1)ADIDLDPGCTLNK	FM(110)ADIDLDPGCTLNK	0	1	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.394755	1724.77496	2.4946	0.0021539	0.5315	0.0004589	3.0261	0.0026128	863.395555929584	12.626	0.11526	12.626	12.564	12.68	0	330	43	1.10399226369747	0.0280360922618905	1.10399226369747	445.718719797203	0	11.3191111586543						514	14	5	NaN	NaN	NaN	2.3405E-05	1	25182	110.44	97.265	1	185230			6301	857	5367	5503	6301	6301	288	
FMATNDLMTELQK	13	Unmodified	_FMATNDLMTELQK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.370552	1540.72655	2.1841	0.0016848	0.57603	0.00044433	2.7602	0.0021291	771.374244933138	13.797	0.25715	13.797	13.708	13.966	0	411	76	1.04982941439551	0.0502061320950493	1.04982941439551	424.254776097513	0	20.2891927380144						848	30	5	NaN	NaN	NaN	0.0025254	1	19733	86.243	70.363	1	352650			6302	2175	5368	5504	6302	6302		
FMCEVQVEGYNYTGMGNSTNK	21	Unmodified	_FMCEVQVEGYNYTGMGNSTNK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1215.01396	2428.01337	-0.17881	-0.00021726	0.97339	0.0011827	0.79458	0.00096543	1215.51658912689	11.961	0.053182	11.961	11.935	11.988	-1.7764E-15	72	43	1.27517645957152	0.027703142560725	1.27517645957152	513.640921427924	0	11.1588224237775						160	7	3	NaN	NaN	NaN	4.8742E-06	1	36477	64.56	62.828	1	25859			6303	1575	5369	5505	6303	6303		
FMDMFPDASLIR	12	Unmodified	_FMDMFPDASLIR_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.843973	1441.67339	0.72928	0.00052642	0.68873	0.00049716	1.418	0.0010236	721.844523340809	17.539	0.1419	17.539	17.477	17.619	0	477	37	1.0055473068722	0.0241905964234823	1.0055473068722	406.608128938087	0	9.78183033500841						336	17	4	NaN	NaN	NaN	0.00066453	1	16713	62.271	53.294	1	81954			6304	2223	5370	5506	6304	6304		
FMDQHPEMDFSK	12	Unmodified	_FMDQHPEMDFSK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.547972	1510.62209	0.5969	0.00030116	0.38161	0.00019254	0.97851	0.00049371	504.548637267226	8.281	0.26611	8.281	8.2366	8.5027	0	681	40	0.867820189810857	0.0264563192615395	0.867820189810857	526.142574764882	0	16.039954011789						755	31	6	NaN	NaN	NaN	0.00015608	1	18817	103.76	101.96	1	506940			6305	3332	5371	5507	6305	6305		
FMDQHPEMDFSK	12	Unmodified	_FMDQHPEMDFSK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.318319	1510.62209	2.2277	0.0016849	0.28408	0.00021485	2.5118	0.0018997	756.318754247932	8.281	0.1597	8.281	8.2277	8.3874	0	435	46	1.03374239103424	0.0301860841315895	1.03374239103424	417.827856307951	0	12.2008993076262						597	19	5	NaN	NaN	NaN	4.7306E-08	1	18818	136.06	123.46	1	304360			6306	3332	5371	5507	6306	6306		
FMEENEGHIVDIHDFSLGSSPHVR	24	Unmodified	_FMEENEGHIVDIHDFSLGSSPHVR_			0	0	0	Q6YHK3	Q6YHK3	Q6YHK3	CD109	CD109 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	688.825055	2751.27111	0.30029	0.00020685	1.676	0.0011545	1.9763	0.0013613	689.327605089977	12.121	0.070937	12.121	12.094	12.165	0	543	19	0.961130371139249	0.012132151913017	0.961130371139249	773.765347045335	0	9.76708157110363						129	9	4	NaN	NaN	NaN	8.8E-05	1	37757	45.587	32.525	1	27697			6307	2095	5372	5508	6307	6307		
FMELLEPLNER	11	Unmodified	_FMELLEPLNER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.855395	1389.69624	1.0958	0.00076255	4.2985	0.0029911	5.3943	0.0037537	695.85595596101	15.393	0.24846	15.393	15.304	15.553	1.7764E-15	471	49	1.00957851518677	0.0322452204768515	1.00957851518677	408.383276687237	0	13.0434717040337						729	29	5	NaN	NaN	NaN	4.0485E-05	1	15146	102.55	79.493	1	227400			6308	1511	5373	5509	6308	6308		
FMEPYIFGSR	10	Unmodified	_FMEPYIFGSR_			0	0	0	Q9Y399	Q9Y399	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.799891	1245.58523	1.0263	0.00064021	-6.5925	-0.0041124	-5.5662	-0.0034722	623.795377706775	13.788	0.16845	13.788	13.717	13.886	0	582	70	0.934820374997243	0.0465871696119698	0.934820374997243	378.573690938284	0	18.8663803465166						520	20	3	NaN	NaN	NaN	0.006299	1	10781	67.507	8.618	1	139470			6309	3374	5374	5510	6309	6309		
FMEQVIFK	8	Unmodified	_FMEQVIFK_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.275521	1040.53649	-0.40323	-0.00021019	-0.36168	-0.00018853	-0.7649	-0.00039873	521.27526783374	11.926	0.23056	11.926	11.837	12.068	0	660	40	0.882057989648486	0.0264269571469923	0.882057989648486	357.977110545846	0	10.725197063029						403	27	3	NaN	NaN	NaN	0.0029631	1	5239	75.243	43.116	1	250430			6310	1330	5375	5511	6310	6310		
FMERDPDELR	10	Unmodified	_FMERDPDELR_			0	0	1	P15374	P15374	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.539805	1306.59759	-2.2454	-0.00098021	1.8752	0.00081858	-0.37025	-0.00016163	436.540458480568	5.4164	0.097533	5.4164	5.381	5.4785	0	822	31	0.771863999559055	0.0204887515295875	0.771863999559055	468.628087747666	0	12.4395028853953						226	12	4	NaN	NaN	NaN	0.0033814	1	12543	58.916	35.863	1	69559			6311	712	5376	5512	6311	6311		
FMITGGNLQDSK	12	Unmodified	_FMITGGNLQDSK_			0	0	0	Q6P1N9	Q6P1N9	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.824095	1309.63364	1.3122	0.00086057	1.0161	0.00066637	2.3283	0.0015269	655.824720064743	8.9021	0.15089	8.9021	8.831	8.9819	0	528	31	0.971237000454584	0.0202174565849151	0.971237000454584	393.110332781842	0	8.18306045010496						226	18	2	NaN	NaN	NaN	3.244E-05	1	12637	110.88	89.609	1	109580			6312	2061	5377	5513	6312	6312		
FMLLFSR	7	Unmodified	_FMLLFSR_			0	0	0	P61966	P61966	P61966	AP1S1	AP-1 complex subunit sigma-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.251849	912.489145	-1.584	-0.00072427	-0.70016	-0.00032015	-2.2841	-0.0010444	457.251522857119	15.189	0.088694	15.189	15.154	15.242	1.7764E-15	735	19	0.831145085810763	0.0122403302193221	0.831145085810763	337.931834392584	0	4.97674511370241						102	11	2	NaN	NaN	NaN	0.025625	1	2547	51.456	36.921	1	22288			6313	1358	5378	5514	6313	6313		
FMLQDVLDLR	10	Unmodified	_FMLQDVLDLR_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.334098	1248.65364	0.86108	0.00053846	-0.40096	-0.00025073	0.46012	0.00028773	625.333772235468	18.39	0.14192	18.39	18.355	18.497	0	510	55	0.983355730988811	0.036351175801219	0.983355730988811	398.218271955362	0	14.7207180015628						467	17	4	NaN	NaN	NaN	9.4687E-06	1	10883	146.27	0	1	215090			6314	1544	5379	5515	6314	6314		
FMNAVFFLLPK	11	Unmodified	_FMNAVFFLLPK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.867577	1325.7206	0.53196	0.00035315	-1.5463	-0.0010265	-1.0143	-0.00067336	663.866955233658	19.694	0.14186	19.694	19.623	19.765	0	531	49	0.969216233931596	0.032338985271784	0.969216233931596	392.24273526091	0	13.0876182161247						454	17	4	NaN	NaN	NaN	0.0023626	1	13167	60.892	53.245	1	125810			6315	1465	5380	5516	6315	6315		
FMNAVFFLLPK	11	Unmodified	_FMNAVFFLLPK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.867577	1325.7206	0.64095	0.0004255	0.040816	2.7097E-05	0.68176	0.0004526	663.867280999727	19.694	0.088666	19.694	19.649	19.738	0	438	25	1.03173026378327	0.0161003532377459	1.03173026378327	417.542215982776	0	6.515828220782						164	11	3	NaN	NaN	NaN	0.0078139	1	13168	54.436	52.637	1	32361			6316	1465	5380	5516	6316	6316		
FMNPFNMPNLYQK	13	Unmodified	_FMNPFNMPNLYQK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.595145	1642.7636	-2.7792	-0.0015247	-0.024909	-1.3665E-05	-2.8041	-0.0015383	548.929969567497	16.44	0.062088	16.44	16.413	16.475	0	825	19	0.769815552739974	0.0122915375224674	0.769815552739974	466.383672180719	0	7.44668302175984						99	8	3	NaN	NaN	NaN	0.0002959	1	22823	69.915	62.357	1	17497			6317	934	5381	5517	6317	6317		
FMNPFNMPNLYQK	13	Unmodified	_FMNPFNMPNLYQK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.389079	1642.7636	1.5904	0.0013079	0.15009	0.00012344	1.7405	0.0014314	822.389770739699	16.44	0.21281	16.44	16.36	16.573	0	363	61	1.08195024817156	0.0401067904857699	1.08195024817156	436.993435889456	0	16.198900278912						1331	25	7	NaN	NaN	NaN	8.1224E-24	1	22826	204.86	187.39	1	1395800			6318	934	5381	5517	6318	6318		
FMNPFNMPNLYQK	13	Oxidation (M)	_FMNPFNM(Oxidation (M))PNLYQK_	FMNPFNM(1)PNLYQK	FM(-45)NPFNM(45)PNLYQK	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.386536	1658.75852	2.2294	0.0018513	3.0643	0.0025445	5.2937	0.0043958	830.389841446612	13.664	0.15962	13.664	13.593	13.753	0	363	46	1.08195024817156	0.0300821596276293	1.08195024817156	436.958183535529	0	12.1490298190037						383	19	3	NaN	NaN	NaN	0.017432	1	23281	57.032	55.776	2	103830			6319	934	5381	5518	6319	6319	333	
FMNPFNMPNLYQK	13	Oxidation (M)	_FMNPFNM(Oxidation (M))PNLYQK_	FMNPFNM(1)PNLYQK	FM(-42)NPFNM(42)PNLYQK	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.386536	1658.75852	2.0346	0.0016895	4.7274	0.0039256	6.762	0.005615	830.390137188865	13.664	0.08864	13.664	13.62	13.708	0	318	37	1.11199926528787	0.0240210084150783	1.11199926528787	449.093822171444	0	9.70116331753809						198	11	3	NaN	NaN	NaN	0.020253	1	23282	47.561	46.68	2	34818			6320	934	5381	5518	6320	6320	333	
FMPVEGMVFCSVECK	15	Unmodified	_FMPVEGMVFCSVECK_			0	0	0	Q9UGI8	Q9UGI8	Q9UGI8	TES	Testin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.397929	1818.78131	1.3017	0.0011851	4.245	0.0038646	5.5467	0.0050497	910.40473910367	15.695	0.20394	15.695	15.65	15.854	0	273	76	1.14198628764525	0.0499577676911505	1.14198628764525	460.868127647189	0	20.161312886452						718	24	5	NaN	NaN	NaN	2.4241E-07	1	27676	87.573	83.723	1	187120			6321	3203	5382	5519	6321	6321		
FMQASEDLLK	10	Unmodified	_FMQASEDLLK_			0	0	0	P15531	P15531	P15531	NME1	Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.297181	1180.57981	1.7793	0.0010521	1.101	0.00065102	2.8804	0.0017031	591.298175415382	10.161	0.34582	10.161	10.037	10.383	0	537	97	0.965173861991602	0.0647496851703352	0.965173861991602	391.101737900957	0	26.2374639387803						1308	40	5	NaN	NaN	NaN	0.00058548	1	8897	100.84	85.338	1	774130			6322	714	5383	5520	6322	6322		
FMQASEDLLK	10	Oxidation (M)	_FM(Oxidation (M))QASEDLLK_	FM(1)QASEDLLK	FM(77)QASEDLLK	0	1	0	P15531	P15531	P15531	NME1	Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.294639	1196.57472	2.0239	0.0012129	0.084458	5.0615E-05	2.1083	0.0012635	599.29490037799	7.7398	0.21293	7.7398	7.6865	7.8995	0	558	40	0.951016745717027	0.0263063536302146	0.951016745717027	385.305579502014	0	10.6580508447647						549	25	4	NaN	NaN	NaN	0.0030329	1	9340	76.572	51.721	1	225020			6323	714	5383	5521	6323	6323	239	
FMQDASDVMQLLLK	14	Unmodified	_FMQDASDVMQLLLK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.915126	1637.8157	1.457	0.0011946	0.51854	0.00042516	1.9756	0.0016198	819.915784755833	19.446	0.11527	19.446	19.41	19.525	0	297	40	1.12600091227925	0.0259923277309138	1.12600091227925	454.796732391006	0	10.4984157564555						413	14	5	NaN	NaN	NaN	4.6646E-17	1	22710	171.09	163.53	1	214680			6324	74	5384	5522	6324	6324		
FMQDASDVMQLLLK	14	Oxidation (M)	_FM(Oxidation (M))QDASDVMQLLLK_	FM(1)QDASDVMQLLLK	FM(60)QDASDVM(-60)QLLLK	0	1	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.912584	1653.81061	1.3188	0.0010918	0.90994	0.00075335	2.2287	0.0018452	827.913866879398	17.965	0.1064	17.965	17.92	18.027	0	309	34	1.11800162319566	0.0220056189808042	1.11800162319566	451.529148625272	0	8.88744541798906						333	13	5	NaN	NaN	NaN	3.4593E-07	1	23158	72.327	64.751	2	82965			6325	74	5384	5523	6325	6325	29	
FMQDPMEIFVDDETK	15	Unmodified	_FMQDPMEIFVDDETK_			0	0	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.907695	1843.80084	1.9241	0.0017757	-0.26803	-0.00024737	1.656	0.0015284	922.907567339229	17.592	0.30148	17.592	17.459	17.761	0	285	61	1.13399579921816	0.0399579567227417	1.13399579921816	457.596446285256	0	16.1240623728528						1118	35	3	NaN	NaN	NaN	3.9055E-06	1	28317	113.86	99.407	1	592840			6326	1705	5385	5524	6326	6326		
FMQDPMEIFVDDETK	15	Oxidation (M)	_FMQDPM(Oxidation (M))EIFVDDETK_	FM(0.001)QDPM(0.999)EIFVDDETK	FM(-31)QDPM(31)EIFVDDETK	0	1	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.905153	1859.79575	1.5731	0.0014644	1.6607	0.001546	3.2338	0.0030104	931.408166446894	13.327	0.097564	13.327	13.274	13.371	0	276	34	1.13998907770044	0.0219693125101945	1.13998907770044	459.985339695916	0	8.86461271916062						254	12	4	NaN	NaN	NaN	0.00041858	1	28686	62.398	61.346	2	51624			6327	1705	5385	5525	6327	6327	557	
FMQDPMEVFVDDETK	15	Unmodified	_FMQDPMEVFVDDETK_			0	0	0	O00148	O00148	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.89987	1829.78519	1.7976	0.0016464	-0.85036	-0.00077884	0.94725	0.00086758	916.400807042284	16.59	0.32808	16.59	16.422	16.75	0	285	61	1.13399579921816	0.0399524602797869	1.13399579921816	457.622618761532	0	16.122766514486						1458	38	5	NaN	NaN	NaN	9.2891E-12	1	27954	130.78	118.1	1	664110			6328	51	5386	5526	6328	6328		
FMQDPMEVFVDDETK	15	Oxidation (M)	_FM(Oxidation (M))QDPMEVFVDDETK_	FM(1)QDPMEVFVDDETK	FM(41)QDPM(-41)EVFVDDETK	0	1	0	O00148	O00148	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.897328	1845.7801	1.7624	0.0016283	0.79149	0.00073126	2.5539	0.0023595	924.399295009501	14.675	0.19506	14.675	14.56	14.755	1.7764E-15	288	37	1.13199748998575	0.0239813645434503	1.13199748998575	456.786416125964	0	9.6770193048315						377	23	4	NaN	NaN	NaN	0.00056853	1	28370	59.77	53.024	2	92649			6329	51	5386	5527	6329	6329	23;24	
FMQDPMEVFVDDETK	15	Oxidation (M)	_FMQDPM(Oxidation (M))EVFVDDETK_	FMQDPM(1)EVFVDDETK	FM(-44)QDPM(44)EVFVDDETK	0	1	0	O00148	O00148	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.897328	1845.7801	1.8653	0.0017234	2.1406	0.0019777	4.0059	0.003701	924.400482030423	12.298	0.13303	12.298	12.254	12.387	0	285	28	1.13399579921816	0.0179823106306443	1.13399579921816	457.592774181188	0	7.25626621662769						276	16	3	NaN	NaN	NaN	1.3553E-05	1	28371	63.908	60.404	2	55865			6330	51	5386	5527	6330	6330	23;24	
FMQTFVLAPEGSVANK	16	Unmodified	_FMQTFVLAPEGSVANK_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.945272	1737.87599	2.2674	0.0019725	1.4228	0.0012378	3.6902	0.0032103	869.946300377017	13.655	0.22168	13.655	13.584	13.806	0	300	145	1.12400150285141	0.0958070285836321	1.12400150285141	453.769842761993	0	38.6781869824916						1718	26	6	NaN	NaN	NaN	7.2453E-09	1	25549	132.9	116.61	1	1048900			6331	1649	5387	5528	6331	6331		
FMQTFVLAPEGSVPNK	16	Unmodified	_FMQTFVLAPEGSVPNK_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.953098	1763.89164	2.6153	0.0023092	0.6265	0.00055317	3.2418	0.0028624	883.454236797777	13.762	0.24826	13.762	13.664	13.912	0	282	202	1.13599383354359	0.133813776420241	1.13599383354359	458.557728835138	0	54.0155585270296						1830	29	5	NaN	NaN	NaN	2.2623E-06	1	26245	84.102	75.728	1	430240			6332	3292	5388	5529	6332	6332		
FMTPVIQDNPSGWGPCAVPEQFR	23	Unmodified	_FMTPVIQDNPSGWGPCAVPEQFR_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.414031	2632.22026	0.75171	0.00066032	-0.77635	-0.00068196	-0.024636	-2.1641E-05	878.748046099897	16.652	0.088643	16.652	16.599	16.688	0	525	40	0.973257487423603	0.0262518066023084	0.973257487423603	587.781001785357	0	15.8542969181026						290	11	4	NaN	NaN	NaN	0.024523	1	37366	20.035	19.52	1	46586			6333	168	5389	5530	6333	6333		
FMVHPAISSINLTTALGSLANIAR	24	Unmodified	_FMVHPAISSINLTTALGSLANIAR_			0	0	0	Q92797	Q92797	Q92797	SYMPK	Symplekin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.124698	2496.35226	1.7055	0.0014209	-1.0225	-0.00085187	0.68305	0.00056907	833.458429561966	19.818	0.026638	19.818	19.8	19.827	0	423	25	1.04178812298108	0.0160870233612731	1.04178812298108	629.348674186495	0	9.7182398231356						81	4	4	NaN	NaN	NaN	2.459E-06	1	36811	42.977	42.279	1	16377			6334	2433	5390	5531	6334	6334		
FMVQTIFAPPNTSDMEAVWK	20	Unmodified	_FMVQTIFAPPNTSDMEAVWK_			0	0	0	Q9P0L0	Q9P0L0	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.374514	2311.10171	-0.27754	-0.00021409	0.79748	0.00061516	0.51994	0.00040107	771.708919807004	19.055	0.062065	19.055	19.011	19.073	0	591	25	0.928742107665821	0.0162143291787672	0.928742107665821	561.305941300418	0	9.79949032903926						116	8	3	NaN	NaN	NaN	1.8992E-07	1	35724	97.084	78.553	1	20527			6335	3146	5391	5532	6335	6335		
FMVQTIFAPPNTSDMEAVWK	20	Unmodified	_FMVQTIFAPPNTSDMEAVWK_			0	0	0	Q9P0L0	Q9P0L0	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1156.55813	2311.10171	-0.42076	-0.00048664	2.683	0.003103	2.2622	0.0026164	1157.06238796783	19.046	0.12411	19.046	18.967	19.091	0	72	43	1.27517645957152	0.0277107298265278	1.27517645957152	513.788828260294	0	11.1650927218286						345	15	4	NaN	NaN	NaN	2.0989E-05	1	35725	41.87	38.02	1	59464			6336	3146	5391	5532	6336	6336		
FMYDPQTDQNIK	12	Unmodified	_FMYDPQTDQNIK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.345391	1498.67623	1.8011	0.0013515	0.88332	0.0006628	2.6844	0.0020143	750.345699977337	8.2721	0.21291	8.2721	8.1656	8.3785	0	447	34	1.02569221487577	0.0221456308390058	1.02569221487577	414.604058656938	0	8.95167994278097						451	25	3	NaN	NaN	NaN	0.0036765	1	18487	62.271	51.484	1	188120			6337	2452	5392	5533	6337	6337		
FNACFESVATNIDEIYK	17	Unmodified	_FNACFESVATNIDEIYK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.96967	2019.92479	1.568	0.0015852	0.56071	0.00056686	2.1287	0.0021521	1011.47164910189	16.111	0.15076	16.111	16.049	16.2	0	186	43	1.1997861197946	0.0278516583469064	1.1997861197946	483.829193098766	0	11.2315396570457						553	18	5	NaN	NaN	NaN	6.6078E-07	1	31982	107.6	96.119	1	126250			6338	1764	5393	5534	6338	6338		
FNADEFEDMVAEK	13	Unmodified	_FNADEFEDMVAEK_			0	0	0	P27635	P27635	P27635	RPL10	60S ribosomal protein L10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.832314	1543.65007	2.3447	0.0018121	0.12353	9.5466E-05	2.4682	0.0019075	772.832901316536	13.895	0.19508	13.895	13.841	14.036	0	456	70	1.01965166402748	0.0462981295067895	1.01965166402748	412.052461057394	0	18.7095837516452						1095	23	6	NaN	NaN	NaN	4.4057E-33	1	19838	232.48	226.61	1	1352900			6339	864	5394	5535	6339	6339		
FNADEFEDMVAEK	13	Oxidation (M)	_FNADEFEDM(Oxidation (M))VAEK_	FNADEFEDM(1)VAEK	FNADEFEDM(120)VAEK	0	1	0	P27635	P27635	P27635	RPL10	60S ribosomal protein L10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.829771	1559.64499	2.1842	0.0017055	0.68998	0.00053876	2.8742	0.0022443	780.83025400603	10.48	0.1153	10.48	10.427	10.543	0	420	85	1.04379886199097	0.0562502727977954	1.04379886199097	421.772152450331	0	22.729281950539						519	14	4	NaN	NaN	NaN	9.2904E-05	1	20329	124.46	121.78	1	143920			6340	864	5394	5536	6340	6340	293	
FNAHGDANTIVCNSK	15	Unmodified	_FNAHGDANTIVCNSK_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.922978	1646.7471	-0.68305	-0.00037562	1.7934	0.00098625	1.1104	0.00061063	549.924116659683	4.5829	0.17733	4.5829	4.5386	4.7159	0	786	40	0.796423123669906	0.0265816558003595	0.796423123669906	482.493798426749	0	16.1038569755336						484	21	5	NaN	NaN	NaN	0.00097152	1	22934	84.999	77.442	1	223370			6341	600	5395	5537	6341	6341		
FNAHGDANTIVCNSK	15	Unmodified	_FNAHGDANTIVCNSK_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.380828	1646.7471	3.2832	0.0027066	-2.0582	-0.0016967	1.225	0.0010099	824.379298356353	4.5829	0.14188	4.5829	4.5475	4.6893	0	360	73	1.08395544855938	0.0481414279912484	1.08395544855938	437.794475833735	0	19.4436508080908						572	17	4	NaN	NaN	NaN	1.5487E-09	1	22935	137.39	119.66	1	149170			6342	600	5395	5537	6342	6342		
FNALFAQGNYSEAAK	15	Unmodified	_FNALFAQGNYSEAAK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.896637	1629.77872	3.1343	0.0025573	-0.29738	-0.00024263	2.837	0.0023147	815.895259020931	10.782	0.23054	10.782	10.72	10.95	0	336	88	1.09998710857178	0.0581348437108529	1.09998710857178	444.308022052837	0	23.4818910333024						1577	27	6	NaN	NaN	NaN	3.8305E-08	1	22467	143.22	108.26	1	923410			6343	1503	5396	5538	6343	6343		
FNDEHIPESPYLVPVIAPSDDAR	23	Unmodified	_FNDEHIPESPYLVPVIAPSDDAR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	861.090487	2580.24963	1.6243	0.0013986	-0.7591	-0.00065365	0.86516	0.00074498	861.424150909294	14.613	0.14185	14.613	14.551	14.693	0	522	106	0.975277694896658	0.0706682558116378	0.975277694896658	589.063385657119	0	42.6833118861575						1278	17	5	NaN	NaN	NaN	1.83E-06	1	37161	64.983	62.238	1	374500			6344	326	5397	5539	6344	6344		
FNDVVWHVSWSITANILAVSGGDNK	25	Unmodified	_FNDVVWHVSWSITANILAVSGGDNK_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	910.460915	2728.36091	1.7411	0.0015852	-8.1364	-0.0074078	-6.3952	-0.0058226	910.787237323349	14.063	0.23051	14.063	13.974	14.205	0	243	274	1.16194328902838	0.182475028971027	1.16194328902838	701.604440353443	0	110.182047427419						1286	27	5	NaN	NaN	NaN	0.071492	1	37681	3.6919	2.8512	1	466550			6345	1275	5398	5540	6345	6345		
FNECGHVLYADIK	13	Unmodified	_FNECGHVLYADIK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.585414	1564.73441	0.37812	0.0001976	-0.22521	-0.00011769	0.15291	7.9908E-05	522.585196390824	8.21	0.30158	8.21	8.1479	8.4495	0	720	64	0.841341816837976	0.0428143894900598	0.841341816837976	509.929267543126	0	25.9493939752393						823	35	5	NaN	NaN	NaN	0.00011477	1	20482	101.64	84.991	1	508320			6346	1206	5399	5541	6346	6346		
FNECGHVLYADIK	13	Unmodified	_FNECGHVLYADIK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.374483	1564.73441	2.5024	0.0019604	-0.7032	-0.00055087	1.7992	0.0014095	783.373441553216	8.21	0.23066	8.21	8.1302	8.3608	0	375	100	1.07392668217569	0.0662629912397972	1.07392668217569	433.933611016527	0	26.7743967467025						966	27	5	NaN	NaN	NaN	2.3694E-08	1	20483	146.58	110.34	1	429940			6347	1206	5399	5541	6347	6347		
FNEEHIPDSPFVVPVASPSGDAR	23	Unmodified	_FNEEHIPDSPFVVPVASPSGDAR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.067794	2466.18155	1.6829	0.0013851	-0.93861	-0.00077254	0.74429	0.0006126	823.401183374505	13.859	0.25715	13.859	13.708	13.966	0	564	79	0.946969335010767	0.0526018145053345	0.946969335010767	572.10697437143	0	31.779133526802						1601	30	5	NaN	NaN	NaN	1.0195E-07	1	36657	66.106	64.855	1	452380			6348	792	5400	5542	6348	6348		
FNEQIEPIYALLR	13	Unmodified	_FNEQIEPIYALLR_			0	0	0	P29083	P29083	P29083	GTF2E1	General transcription factor IIE subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.435398	1604.85624	0.76955	0.00061829	-3.223	-0.0025894	-2.4534	-0.0019712	803.432467547183	17.894	0.070931	17.894	17.867	17.938	0	378	25	1.07192009927972	0.0160493451484018	1.07192009927972	433.027840720889	0	6.48351801525752						80	9	2	NaN	NaN	NaN	0.015307	1	21751	57.293	48.918	1	30696			6349	881	5401	5543	6349	6349		
FNFFVNK	7	Unmodified	_FNFFVNK_			0	0	0	Q68CQ4	Q68CQ4	Q68CQ4	DIEXF	Digestive organ expansion factor homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.239796	914.465038	-2.6446	-0.0012119	0.056048	2.5683E-05	-2.5886	-0.0011862	458.239416228582	11.669	0.15961	11.669	11.607	11.766	0	783	28	0.798467866007927	0.0184001219300317	0.798467866007927	324.635333736516	0	7.48098950232406						222	19	3	NaN	NaN	NaN	0.026117	1	2587	64.547	46.853	1	52973			6350	2021	5402	5544	6350	6350		
FNFGEEEFK	9	Unmodified	_FNFGEEEFK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.758746	1145.50294	1.3664	0.00078401	-0.21615	-0.00012402	1.1503	0.00065999	573.758217583841	10.879	0.22171	10.879	10.764	10.986	0	597	46	0.924688525662974	0.030408192841195	0.924688525662974	374.829022109836	0	12.3261756477626						529	26	4	NaN	NaN	NaN	0.00050836	1	7934	91.783	79.716	1	238930			6351	2404	5403	5545	6351	6351		
FNFLAPELPAVSEFSTSETMGHSADR	26	Unmodified	_FNFLAPELPAVSEFSTSETMGHSADR_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.444713	2839.31231	0.96937	0.00091843	1.2622	0.0011959	2.2316	0.0021143	947.780511502203	17.929	0.09752	17.929	17.885	17.982	0	381	79	1.06991323971056	0.0521963809421835	1.06991323971056	645.906817539151	0	31.5109646746191						435	12	4	NaN	NaN	NaN	0.023703	1	37979	15.309	14.212	1	66357			6352	1267	5404	5546	6352	6352		
FNFLAPELPAVSEFSTSETMGHSADR	26	Unmodified	_FNFLAPELPAVSEFSTSETMGHSADR_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.444713	2839.31231	1.1673	0.0011059	1.8099	0.0017148	2.9772	0.0028207	947.447008243317	17.903	0.15072	17.903	17.823	17.974	0	237	46	1.16593139812432	0.0299169932793457	1.16593139812432	703.872995367716	0	18.0608942394083						374	18	4	NaN	NaN	NaN	0.023703	1	37980	15.309	11.913	1	68967			6353	1267	5404	5546	6353	6353		
FNFLNPNDPYHAYYR	15	Unmodified	_FNFLNPNDPYHAYYR_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.300554	1929.87983	1.2629	0.00081366	-1.1238	-0.00072409	0.13903	8.9576E-05	644.63427976207	12.839	0.15076	12.839	12.777	12.928	0	630	40	0.902373728295776	0.0263939831579142	0.902373728295776	546.012507142629	0	15.9705945171414						534	18	5	NaN	NaN	NaN	6.666E-12	1	30283	157.77	142.79	1	275890			6354	1852	5405	5547	6354	6354		
FNFLNPNDPYHAYYR	15	Unmodified	_FNFLNPNDPYHAYYR_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.947192	1929.87983	2.8349	0.0027383	1.5683	0.0015149	4.4032	0.0042532	966.448919736372	12.839	0.13302	12.839	12.786	12.919	1.7764E-15	216	58	1.17988115188462	0.0378428307662209	1.17988115188462	475.953759560751	0	15.2654676675141						701	16	5	NaN	NaN	NaN	5.8164E-07	1	30284	134.2	120.42	1	185670			6355	1852	5405	5547	6355	6355		
FNHFSLTLNTNHGHILVDYSK	21	Unmodified	_FNHFSLTLNTNHGHILVDYSK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	615.0632	2456.22369	0.53167	0.00032701	0.97962	0.00060253	1.5113	0.00092954	615.314604630874	11.483	0.079816	11.483	11.456	11.536	0	567	25	0.944945209309785	0.0161918857668037	0.944945209309785	761.194335417597	0	13.043266005256						101	10	4	NaN	NaN	NaN	0.062438	1	36603	8.4123	7.0765	1	14951			6356	546	5406	5548	6356	6356		
FNHPEIVQLVSELEAER	17	Unmodified	_FNHPEIVQLVSELEAER_			0	0	0	Q7Z4H3	Q7Z4H3	Q7Z4H3	HDDC2	HD domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.681211	2009.0218	-1.2487	-0.0008375	0.79045	0.00053014	-0.45828	-0.00030736	671.01615631125	17.344	0.088678	17.344	17.3	17.388	0	663	19	0.880024865079826	0.0121995944247819	0.880024865079826	532.339915531027	0	7.37971314595995						132	11	3	NaN	NaN	NaN	0.0013131	1	31797	38.839	37.365	1	25365			6357	2137	5407	5549	6357	6357		
FNHWELK	7	Unmodified	_FNHWELK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.248152	972.481751	1.3305	0.00064827	0.46867	0.00022836	1.7991	0.00087663	487.248503439799	5.984	0.32814	5.984	5.913	6.2411	0	684	37	0.86578508874114	0.0244195217531761	0.86578508874114	351.693763781535	0	9.91954426889805						589	38	4	NaN	NaN	NaN	0.022194	1	3679	67.903	31.333	1	366210			6358	565	5408	5550	6358	6358		
FNIDEVLQEWEAEHGK	16	Unmodified	_FNIDEVLQEWEAEHGK_			0	0	0	Q9UKL0	Q9UKL0	Q9UKL0	RCOR1	REST corepressor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.642645	1942.90611	-0.66318	-0.00043017	0.51419	0.00033353	-0.14899	-9.6641E-05	648.977416398261	17.406	0.070921	17.406	17.371	17.442	0	630	19	0.902373728295776	0.0121809917817419	0.902373728295776	545.986392173551	0	7.37017883772978						116	9	3	NaN	NaN	NaN	8.2109E-05	1	30575	66.619	62.313	1	25438			6359	3265	5409	5551	6359	6359		
FNIENIDGPHSK	12	Unmodified	_FNIENIDGPHSK_			0	0	0	Q8N5I9	Q8N5I9	Q8N5I9	C12orf45	Uncharacterized protein C12orf45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.561486	1369.66263	-1.6588	-0.000759	1.9067	0.00087246	0.24797	0.00011346	457.56207706372	7.5092	0.12413	7.5092	7.4649	7.589	0	831	22	0.76571780291124	0.0143431242639176	0.76571780291124	464.672791474324	0	8.70406769287342						180	15	4	NaN	NaN	NaN	0.061811	1	14471	35.33	32.451	1	40916			6360	2256	5410	5552	6360	6360		
FNIIASLYDYNPNLATYMK	19	Unmodified	_FNIIASLYDYNPNLATYMK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.05882	2250.10309	0.70595	0.00079494	0.71923	0.00080989	1.4252	0.0016048	1126.56193171109	19.756	0.044322	19.756	19.729	19.774	0	87	31	1.26527909472281	0.0198069346512288	1.26527909472281	509.883633567701	0	7.98182144313319						112	6	3	NaN	NaN	NaN	0.0024226	1	35183	26.682	25.058	1	20442			6361	21	5411	5553	6361	6361		
FNILGTHTK	9	Unmodified	_FNILGTHTK_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.787641	1029.56073	0.89142	0.00045978	1.0172	0.00052467	1.9086	0.00098446	515.788349734701	6.5781	0.15076	6.5781	6.5338	6.6845	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	365.448981702194	0	7.41793181446667						237	18	3	NaN	NaN	NaN	0.00067704	1	4986	99.305	64.373	1	69697			6362	1044	5412	5554	6362	6362		
FNILGTNTK	9	Unmodified	_FNILGTNTK_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.279649	1006.54475	-0.2722	-0.00013727	-1.3984	-0.0007052	-1.6706	-0.00084247	504.278772962422	9.2213	0.17738	9.2213	9.1504	9.3278	0	702	37	0.853568545818287	0.0244432719031649	0.853568545818287	346.567592458013	0	9.92450569644103						271	21	3	NaN	NaN	NaN	8.3902E-05	1	4434	110.22	73.648	1	73643			6363	1020	5413	5555	6363	6363		
FNISNGGPAPEAITDK	16	Unmodified	_FNISNGGPAPEAITDK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.907202	1629.79985	2.1385	0.0017448	-1.5927	-0.0012995	0.54579	0.00044531	815.904970447952	9.576	0.10641	9.576	9.514	9.6204	0	348	103	1.09197348738011	0.0681910031881943	1.09197348738011	441.071107852559	0	27.5437834978538						330	13	2	NaN	NaN	NaN	0.031935	1	22473	41.87	40.028	1	69856			6364	991	5414	5556	6364	6364		
FNLDATELSIR	11	Unmodified	_FNLDATELSIR_			0	0	0	O43752	O43752	O43752	STX6	Syntaxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.838059	1277.66157	1.3996	0.0008955	-0.56493	-0.00036147	0.83464	0.00053403	639.836099587167	13.575	0.18621	13.575	13.504	13.691	0	537	55	0.965173861991602	0.0363863959780442	0.965173861991602	390.758305618028	0	14.7313214746494						505	22	4	NaN	NaN	NaN	0.012084	1	11698	54.584	33.309	1	114130			6365	226	5415	5557	6365	6365		
FNLETEWK	8	Unmodified	_FNLETEWK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.763832	1065.51311	0.091348	4.8758E-05	-0.38613	-0.0002061	-0.29478	-0.00015734	533.763691523205	11.19	0.15072	11.19	11.128	11.279	0	669	37	0.875957769340875	0.0244093537126775	0.875957769340875	355.392539360894	0	9.90333381783262						342	18	4	NaN	NaN	NaN	0.0031132	1	5853	72.492	43.391	1	93419			6366	255	5416	5558	6366	6366		
FNLLAHLADDLGHVVPNSR	19	Unmodified	_FNLLAHLADDLGHVVPNSR_			0	0	0	Q8N5N7	Q8N5N7	Q8N5N7	MRPL50	39S ribosomal protein L50, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.70435	2087.09122	0.31809	0.00022161	-0.86927	-0.00060563	-0.55119	-0.00038401	697.038090992547	17.787	0.088649	17.787	17.752	17.841	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	576.359998867248	0	12.2351632068047						186	11	3	NaN	NaN	NaN	3.7604E-06	1	33143	50.519	48.13	1	39241			6367	2261	5417	5559	6367	6367		
FNLMAIVSDR	10	Unmodified	_FNLMAIVSDR_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.305341	1164.59613	-0.37046	-0.00021609	1.7889	0.0010435	1.4184	0.00082739	583.307053793947	16.245	0.18619	16.245	16.165	16.351	0	606	28	0.918606045818476	0.0182524998058907	0.918606045818476	372.290815950139	0	7.39733651525262						197	22	3	NaN	NaN	NaN	0.00014916	1	8464	65.404	47.001	1	38059			6368	3434	5418	5560	6368	6368		
FNLTGLNEQVPHYR	14	Unmodified	_FNLTGLNEQVPHYR_			0	0	0	P67870	P67870	P67870	CSNK2B	Casein kinase II subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.289878	1686.8478	0.34685	0.00019538	-0.13242	-7.4592E-05	0.21442	0.00012078	563.289530837598	11.19	0.22169	11.19	11.092	11.314	0	678	43	0.869855008346864	0.0284894438301995	0.869855008346864	526.876339737967	0	17.2562251667123						819	26	5	NaN	NaN	NaN	4.2207E-09	1	24102	185.18	160.49	1	400210			6369	1442	5419	5561	6369	6369		
FNLTGLNEQVPHYR	14	Unmodified	_FNLTGLNEQVPHYR_			0	0	0	P67870	P67870	P67870	CSNK2B	Casein kinase II subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.431178	1686.8478	2.2837	0.0019285	-0.53485	-0.00045165	1.7489	0.0014768	844.430476981224	11.181	0.13299	11.181	11.128	11.261	0	336	31	1.09998710857178	0.0200285363602049	1.09998710857178	444.181306995997	0	8.0876415626758						245	16	3	NaN	NaN	NaN	8.1067E-06	1	24103	108.24	93.881	1	52389			6370	1442	5419	5561	6370	6370		
FNLTYVSHDGDDK	13	Unmodified	_FNLTYVSHDGDDK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.231805	1509.67359	-0.87229	-0.00043984	0.7797	0.00039315	-0.092593	-4.6688E-05	504.232350814104	7.5447	0.24835	7.5447	7.5003	7.7487	0	753	40	0.81889964927511	0.0265446998138166	0.81889964927511	496.485825011998	0	16.0936290526253						557	29	5	NaN	NaN	NaN	0.0029473	1	18779	77.358	69.801	1	319340			6371	857	5420	5562	6371	6371		
FNLTYVSHDGDDK	13	Unmodified	_FNLTYVSHDGDDK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.84407	1509.67359	1.9858	0.0015009	1.7813	0.0013464	3.7671	0.0028474	756.347923391411	7.5447	0.31929	7.5447	7.4383	7.7576	0	387	142	1.06589869032374	0.0945441223691449	1.06589869032374	430.827547665881	0	38.2139623177044						1349	37	5	NaN	NaN	NaN	2.9065E-11	1	18780	168.43	153.28	1	711120			6372	857	5420	5562	6372	6372		
FNLTYVSHDGDDKK	14	Unmodified	_FNLTYVSHDGDDKK_			0	0	1	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.930126	1637.76855	-0.073773	-4.0348E-05	1.4412	0.00078823	1.3674	0.00074788	546.930855676774	6.0017	0.062079	6.0017	5.9751	6.0372	0	741	22	0.827064408645228	0.0142833636988314	0.827064408645228	501.079974767003	0	8.65362775496789						122	8	3	NaN	NaN	NaN	0.00022657	1	22703	76.255	68.29	1	30373			6373	857	5421	5563	6373	6373		
FNNYVDCMK	9	Unmodified	_FNNYVDCMK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.752084	1189.48961	1.0063	0.00059948	1.2736	0.00075875	2.2799	0.0013582	595.7530847143	7.066	0.17744	7.066	7.0214	7.1989	0	582	40	0.934820374997243	0.0263355149208984	0.934820374997243	378.769311827016	0	10.6705899122366						477	21	4	NaN	NaN	NaN	0.0082732	1	9135	69.716	57.649	1	183480			6374	1465	5422	5564	6374	6374		
FNPDIFSPGVR	11	Unmodified	_FNPDIFSPGVR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.822212	1247.62987	1.1726	0.00073268	-1.9836	-0.0012394	-0.81095	-0.0005067	624.821094490083	12.706	0.17736	12.706	12.653	12.83	0	606	43	0.918606045818476	0.0283868792767229	0.918606045818476	372.00068067991	0	11.4956117057889						493	21	4	NaN	NaN	NaN	2.6161E-05	1	10854	114.39	101.12	1	185780			6375	307	5423	5565	6375	6375		
FNPETDYLTGTDGK	14	Unmodified	_FNPETDYLTGTDGK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.35701	1556.69947	2.0438	0.0015928	0.94898	0.00073959	2.9928	0.0023324	779.357484589393	9.647	0.15961	9.647	9.5672	9.7268	0	429	61	1.03776581230406	0.0402508992087349	1.03776581230406	419.341333991604	0	16.2646192121879						636	19	4	NaN	NaN	NaN	1.4332E-05	1	20250	58.476	49.67	1	212810			6376	2674	5424	5566	6376	6376		
FNPFVTSDR	9	Unmodified	_FNPFVTSDR_			0	0	0	P61254;Q9UNX3	P61254	P61254	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.766906	1081.51926	0.63719	0.00034521	1.7052	0.00092382	2.3424	0.001269	541.767363169652	9.443	0.49661	9.443	9.2834	9.78	0	636	91	0.898312834727904	0.0609895709998504	0.898312834727904	364.393559444109	0	24.7399413728028						1791	57	5	NaN	NaN	NaN	0.00013798	1	6238	102.46	74.76	1	1637500			6377	1339	5425	5567	6377	6377		
FNPIETFLLGSCASDR	16	Unmodified	_FNPIETFLLGSCASDR_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.940718	1825.86688	0.7711	0.00070474	5.4591	0.0049892	6.2302	0.005694	913.946469658053	19.179	0.13299	19.179	19.117	19.25	0	270	43	1.14398322290989	0.0279667154484231	1.14398322290989	461.660462368179	0	11.2861155008873						378	16	4	NaN	NaN	NaN	2.7353E-06	1	27873	89.359	78.572	1	74909			6378	3059	5426	5568	6378	6378		
FNQAQSGNIQSTVMLDK	17	Unmodified	_FNQAQSGNIQSTVMLDK_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.962182	1879.90981	1.5448	0.0014536	-0.86953	-0.0008182	0.6753	0.00063543	940.961660658674	9.4164	0.11528	9.4164	9.381	9.4962	0	231	34	1.16991841121525	0.0219300818025272	1.16991841121525	472.024431683128	0	8.84808231101329						282	14	4	NaN	NaN	NaN	7.6983E-26	1	29153	187.49	181.88	1	67442			6379	1044	5427	5569	6379	6379		
FNQCGTCNEFK	11	Unmodified	_FNQCGTCNEFK_			0	0	0	Q9UBR2	Q9UBR2	Q9UBR2	CTSZ	Cathepsin Z	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.787186	1403.55982	2.0242	0.0014226	-0.39057	-0.00027449	1.6336	0.0011481	702.786609219273	4.7337	0.13303	4.7337	4.6982	4.8312	0	504	34	0.987393073566096	0.0222007820488888	0.987393073566096	399.370223318724	0	8.97953562981064						248	16	4	NaN	NaN	NaN	0.00044547	1	15563	92.428	72.245	1	59865			6380	3186	5428	5570	6380	6380		
FNQTYQLAHGTAEEK	15	Unmodified	_FNQTYQLAHGTAEEK_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.915558	1735.81656	3.2057	0.0027855	-2.64	-0.0022939	0.56568	0.00049153	868.913599062515	5.0529	0.070916	5.0529	5.0263	5.0972	0	225	28	1.17390432875292	0.0179353983689632	1.17390432875292	473.920541727284	0	7.24075506233407						171	9	3	NaN	NaN	NaN	1.0683E-08	1	25491	128.41	115.83	1	43054			6381	1733	5429	5571	6381	6381		
FNQVLDQFGEK	11	Unmodified	_FNQVLDQFGEK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.830234	1323.64592	1.3236	0.00087735	-0.57757	-0.00038283	0.74607	0.00049452	662.829609161255	10.321	0.22169	10.321	10.223	10.445	0	519	37	0.97729762293174	0.0242341119852805	0.97729762293174	395.519672056388	0	9.80772673552826						564	26	4	NaN	NaN	NaN	0.00035771	1	13090	101.82	90.462	1	285630			6382	191	5430	5572	6382	6382		
FNSLNELVDYHR	12	Unmodified	_FNSLNELVDYHR_			0	0	0	P62993	P62993	P62993	GRB2	Growth factor receptor-bound protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.91604	1505.72629	-1.1835	-0.00059522	-0.53972	-0.00027143	-1.7233	-0.00086666	502.915910778409	10.888	0.25715	10.888	10.755	11.012	0	783	37	0.798467866007927	0.024531790781615	0.798467866007927	484.109879801505	0	14.8735882709717						479	30	4	NaN	NaN	NaN	2.2272E-07	1	18672	164.31	152.95	1	239790			6383	1420	5431	5573	6383	6383		
FNTANDDNVTQVR	13	Unmodified	_FNTANDDNVTQVR_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.352594	1492.69063	1.7036	0.0012732	-1.1069	-0.00082723	0.59668	0.00044593	747.351717420182	5.4962	0.21283	5.4962	5.443	5.6559	0	480	49	1.00353128488872	0.03226750840465	1.00353128488872	405.661085375355	0	13.0436117726416						624	25	5	NaN	NaN	NaN	3.1108E-11	1	18317	145.95	112.19	1	203060			6384	501	5432	5574	6384	6384		
FNTGPVGK	8	Unmodified	_FNTGPVGK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	410.221603	818.428653	-0.12821	-5.2596E-05	-3.2758	-0.0013438	-3.404	-0.0013964	410.220378102616	3.8558	0.088718	3.8558	3.8026	3.8914	0	843	34	0.757518876820989	0.0225549061059918	0.757518876820989	308.520774853901	0	9.18611710084417						140	11	3	NaN	NaN	NaN	0.017139	1	1186	38.322	30.319	1	39303			6385	2064	5433	5575	6385	6385		
FNVDEYSDLVTLTK	14	Unmodified	_FNVDEYSDLVTLTK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.411785	1642.80902	2.348	0.0019311	-0.9517	-0.00078269	1.3963	0.0011484	822.41150476783	15.588	0.28377	15.588	15.526	15.81	0	348	52	1.09197348738011	0.0340696336086099	1.09197348738011	441.041666233704	0	13.7605245442031						1069	33	5	NaN	NaN	NaN	8.6669E-17	1	22834	156.02	139.74	1	421220			6386	1095	5434	5576	6386	6386		
FNVEDGEIVQQVR	13	Unmodified	_FNVEDGEIVQQVR_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.888812	1531.76307	1.7541	0.0013452	-3.8155	-0.0029261	-2.0614	-0.0015809	766.885288210223	10.667	0.15959	10.667	10.587	10.746	0	447	28	1.02569221487577	0.0181216541002778	1.02569221487577	414.522120006927	0	7.32366529328607						225	19	2	NaN	NaN	NaN	1.8325E-06	1	19489	112.93	101.57	1	88594			6387	2268	5435	5577	6387	6387		
FNVLQYVVPEVK	12	Unmodified	_FNVLQYVVPEVK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.903202	1433.79185	1.1023	0.00079135	-1.3523	-0.00097079	-0.24996	-0.00017945	717.902226271022	17.699	0.19507	17.699	17.61	17.805	0	528	40	0.971237000454584	0.0262663358758335	0.971237000454584	392.754767040877	0	10.6217417819769						617	23	4	NaN	NaN	NaN	0.00035937	1	16505	74.849	59.701	1	323430			6388	1728	5436	5578	6388	6388		
FNVPVSLESK	10	Unmodified	_FNVPVSLESK_			0	0	0	P82979	P82979	P82979	SARNP	SAP domain-containing ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.305864	1118.59717	1.0349	0.00057986	-1.42	-0.00079561	-0.38506	-0.00021575	560.305298947591	10.844	0.20395	10.844	10.72	10.924	0	642	58	0.894250814548268	0.0386079489287342	0.894250814548268	362.594573994914	0	15.6544814574235						587	24	4	NaN	NaN	NaN	0.0025789	1	7234	85.716	72.889	1	342640			6389	1480	5437	5579	6389	6389		
FNVWDVGGQDK	11	Unmodified	_FNVWDVGGQDK_			0	0	0	P62330	P62330	P62330	ARF6	ADP-ribosylation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.801477	1263.5884	0.40157	0.00025411	-0.61545	-0.00038946	-0.21389	-0.00013535	632.801033762506	11.828	0.11529	11.828	11.784	11.899	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	375.232798752013	0	9.84792363480477						249	14	3	NaN	NaN	NaN	2.3065E-05	1	11312	126.29	117.32	1	74558			6390	1389	5438	5580	6390	6390		
FNWNHCGEMAPACK	14	Unmodified	_FNWNHCGEMAPACK_			0	0	0	P15328	P15328	P15328	FOLR1	Folate receptor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.570893	1720.69085	-0.04197	-2.4115E-05	0.77004	0.00044244	0.72807	0.00041833	574.571515998941	6.9239	0.062017	6.9239	6.8974	6.9594	0	714	37	0.845418525735192	0.0244568589772431	0.845418525735192	511.993032153569	0	14.8112928727483						216	8	4	NaN	NaN	NaN	8.193E-06	1	25072	101.45	98.36	1	58127			6391	711	5439	5581	6391	6391		
FNWNHCGEMAPACK	14	Unmodified	_FNWNHCGEMAPACK_			0	0	0	P15328	P15328	P15328	FOLR1	Folate receptor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.352702	1720.69085	2.8952	0.0024938	-1.2989	-0.0011188	1.5963	0.001375	861.351538509857	6.9239	0.070866	6.9239	6.8974	6.9683	-8.8818E-16	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	437.637472869295	0	8.09526318884315						208	9	4	NaN	NaN	NaN	0.0041292	1	25073	62.705	61.898	1	44446			6392	711	5439	5581	6392	6392		
FNYGFEYLGVQDK	13	Unmodified	_FNYGFEYLGVQDK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.375006	1578.73546	1.6302	0.0012885	0.16597	0.00013118	1.7962	0.0014197	790.375271935969	14.099	0.18622	14.099	14.01	14.196	0	408	58	1.0518390438467	0.0381566484153506	1.0518390438467	424.97575539286	0	15.4164751521971						535	22	3	NaN	NaN	NaN	4.0387E-17	1	20927	183.08	157.22	1	163470			6393	1737	5440	5582	6393	6393		
FPAEDEFPDLSAHNNHMAK	19	Unmodified	_FPAEDEFPDLSAHNNHMAK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	543.246915	2168.95855	-1.4835	-0.0008059	0.58374	0.00031712	-0.89975	-0.00048879	543.498371863966	9.4962	0.22168	9.4962	9.4253	9.647	0	771	22	0.806643990516186	0.0143032423211241	0.806643990516186	650.270072258361	0	11.5304527487206						299	26	3	NaN	NaN	NaN	0.021796	1	34289	35.45	35.45	1	62357			6394	668	5441	5583	6394	6394		
FPAEQYYR	8	Unmodified	_FPAEQYYR_			0	0	0	Q15631	Q15631	Q15631	TSN	Translin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.256174	1072.49779	0.98454	0.00052895	6.9345	0.0037256	7.9191	0.0042546	537.762310082976	6.8974	0.22163	6.8974	6.8264	7.0481	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	359.487010433214	0	9.89564050314095						389	26	4	NaN	NaN	NaN	0.002729	1	6011	67.903	57.075	1	121540			6395	1857	5442	5584	6395	6395		
FPAFELDSSK	10	Unmodified	_FPAFELDSSK_			0	0	0	Q9NS86	Q9NS86	Q9NS86	LANCL2	LanC-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.782222	1139.54989	0.031197	1.7807E-05	-2.4695	-0.0014095	-2.4383	-0.0013917	570.780730428933	11.704	0.19515	11.704	11.553	11.749	0	636	55	0.898312834727904	0.0365328548070064	0.898312834727904	364.160084625969	0	14.8097711441219						402	23	3	NaN	NaN	NaN	0.03632	1	7773	24.821	11.994	1	85807			6396	3034	5443	5585	6396	6396		
FPDAGEDELLK	11	Unmodified	_FPDAGEDELLK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.303518	1232.59248	1.6784	0.0010361	0.090735	5.6011E-05	1.7692	0.0010921	617.303413832125	10.862	0.61183	10.862	10.578	11.19	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.258036328537	0	9.84241585829233						587	70	2	NaN	NaN	NaN	0.00046792	1	10392	70.389	60.875	1	353370			6397	1095	5444	5586	6397	6397		
FPDEDEILEK	10	Unmodified	_FPDEDEILEK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.795526	1233.5765	1.6492	0.0010188	-0.017669	-1.0916E-05	1.6315	0.0010079	617.795039686516	10.392	0.43449	10.392	10.268	10.702	0	588	67	0.93076847747433	0.0445523806599541	0.93076847747433	376.972992529577	0	18.0442770336117						1022	50	4	NaN	NaN	NaN	3.6311E-05	1	10422	81.099	66.336	1	586750			6398	776	5445	5587	6398	6398		
FPDELAHVEK	10	Unmodified	_FPDELAHVEK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	395.536389	1183.58734	-1.8175	-0.00071887	-0.33237	-0.00013146	-2.1498	-0.00085034	395.536287318808	7.1811	0.1862	7.1811	7.1014	7.2875	0	849	49	0.753417699604308	0.0328002842432716	0.753417699604308	457.924918533814	0	19.9359100507919						355	22	3	NaN	NaN	NaN	0.054445	1	8968	34.953	27.306	1	87534			6399	270	5446	5588	6399	6399		
FPDELAHVEK	10	Unmodified	_FPDELAHVEK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.800946	1183.58734	1.4197	0.00084161	0.75027	0.00044476	2.17	0.0012864	592.801317231236	7.1811	0.1862	7.1811	7.0925	7.2787	8.8818E-16	543	40	0.961130371139249	0.0262990708755764	0.961130371139249	389.451830538125	0	10.6564328851712						341	22	3	NaN	NaN	NaN	0.00016508	1	8970	102.55	79.493	1	92458			6400	270	5446	5588	6400	6400		
FPDENFK	7	Unmodified	_FPDENFK_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.711068	895.407583	-0.62786	-0.00028173	-0.34419	-0.00015444	-0.97205	-0.00043617	448.71092742377	6.6225	0.93115	6.6225	6.2057	7.1368	0	786	64	0.796423123669906	0.0429396119703519	0.796423123669906	323.905956501432	0	17.4635764252644						949	106	2	NaN	NaN	NaN	0.0091525	1	2252	84.699	55.389	1	743160			6401	816	5447	5589	6401	6401		
FPDSVEELR	9	Unmodified	_FPDSVEELR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.272021	1090.52949	-0.028523	-1.5581E-05	-0.61531	-0.00033612	-0.64383	-0.00035171	546.27136971365	9.3632	0.31923	9.3632	9.2391	9.5583	0	660	40	0.882057989648486	0.0264342930913768	0.882057989648486	357.762734411816	0	10.7217496917444						723	37	4	NaN	NaN	NaN	0.0017163	1	6470	94.806	72.42	1	355400			6402	1867	5448	5590	6402	6402		
FPDYLTVSPPIGDLQVFYK	19	Unmodified	_FPDYLTVSPPIGDLQVFYK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1100.07226	2198.12996	0.62546	0.00068805	-0.13311	-0.00014643	0.49236	0.00054163	1100.57346552823	19.827	0.088682	19.827	19.774	19.862	0	84	55	1.26725910986255	0.0356378456166904	1.26725910986255	510.7556457531	0	14.363464195713						343	11	3	NaN	NaN	NaN	4.1679E-07	1	34659	81.908	77.31	1	76395			6403	1250	5449	5591	6403	6403		
FPEEEAPSTVLSQNLFTPK	19	Unmodified	_FPEEEAPSTVLSQNLFTPK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.53878	2133.063	1.0776	0.0011503	-0.35915	-0.0003834	0.71841	0.00076694	1068.04027891934	15.863	0.37244	15.863	15.668	16.041	1.7764E-15	156	94	1.21966378336455	0.0615321310038661	1.21966378336455	491.667007177759	0	24.8046380556487						1678	43	4	NaN	NaN	NaN	0.065374	1	33783	22.724	16.889	1	421430			6404	519	5450	5592	6404	6404		
FPEELTQTFMSCNLITGMFQR	21	Unmodified	_FPEELTQTFMSCNLITGMFQR_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	850.732372	2549.17529	0.83489	0.00071026	-0.91868	-0.00078155	-0.083795	-7.1287E-05	851.0662535501	20.031	0.026587	20.031	20.031	20.057	0	414	52	1.04781950764076	0.0341872929561484	1.04781950764076	632.919649118526	0	20.6503212665287						243	4	6	NaN	NaN	NaN	8.2005E-07	1	37023	98.895	98.055	1	68273			6405	859	5451	5593	6405	6405		
FPEILQK	7	Unmodified	_FPEILQK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.755278	873.496004	-3.0416	-0.0013315	1.1289	0.00049419	-1.9127	-0.0008373	437.755727207948	9.381	0.31039	9.381	9.2834	9.5938	0	804	37	0.78414869089473	0.0245591241108515	0.78414869089473	319.034706582026	0	9.9919990246708						534	36	4	NaN	NaN	NaN	0.0086281	1	1917	80.294	58.366	1	263020			6406	1250	5452	5594	6406	6406		
FPELNYQLK	9	Unmodified	_FPELNYQLK_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.308406	1150.60226	0.042663	2.4587E-05	-1.7546	-0.0010112	-1.7119	-0.00098658	576.307277991406	11.855	0.26605	11.855	11.775	12.041	0	600	49	0.922661313351899	0.0324511442563469	0.922661313351899	373.98756802763	0	13.1536072278304						387	31	2	NaN	NaN	NaN	0.036451	1	8091	34.931	23.571	1	174090			6407	1020	5453	5595	6407	6407		
FPELYPFLLK	10	Unmodified	_FPELYPFLLK_			0	0	0	Q6YHU6	Q6YHU6	Q6YHU6	THADA	Thyroid adenoma-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.860275	1265.706	0.049008	3.1064E-05	-1.6035	-0.0010164	-1.5545	-0.00098534	633.859121273278	18.577	0.097532	18.577	18.541	18.639	0	558	49	0.951016745717027	0.0323613705025652	0.951016745717027	385.065579764266	0	13.1030814658696						160	12	2	NaN	NaN	NaN	0.0089801	1	11390	67.464	52.701	1	29903			6408	2096	5454	5596	6408	6408		
FPEVEDVVMVNVR	13	Unmodified	_FPEVEDVVMVNVR_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.892509	1531.77046	1.657	0.0012708	1.9797	0.0015182	3.6367	0.002789	766.895323658288	15.18	0.17734	15.18	15.118	15.296	0	417	49	1.04580932352505	0.0321562992894993	1.04580932352505	422.652185861174	0	12.9956100774688						619	21	4	NaN	NaN	NaN	0.00047542	1	19493	51.531	47.285	1	169270			6409	527	5455	5597	6409	6409		
FPEVIINFPDPAQK	14	Unmodified	_FPEVIINFPDPAQK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.955724	1613.84534	-2.9112	-0.001569	1.1823	0.00063722	-1.7288	-0.00093177	539.290995881282	16.555	0.070945	16.555	16.528	16.599	0	798	10	0.788241307691771	0.00613849790436405	0.788241307691771	477.618161915371	0	3.71949307578052						40	9	2	NaN	NaN	NaN	0.037867	1	22014	32.051	31.727	1	6424			6410	1498	5456	5598	6410	6410		
FPFNTPK	7	Unmodified	_FPFNTPK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.726521	849.438489	-0.97335	-0.00041438	0.11039	4.6995E-05	-0.86296	-0.00036738	425.726547783935	8.0325	0.17747	8.0325	7.935	8.1124	0	765	49	0.810730346695089	0.0326999572037219	0.810730346695089	329.994034167466	0	13.309962848619						215	21	3	NaN	NaN	NaN	0.032485	1	1549	51.43	27.855	1	62790			6411	581	5457	5599	6411	6411		
FPGIWAHGDYCR	12	Unmodified	_FPGIWAHGDYCR_			0	0	0	Q86V21	Q86V21	Q86V21	AACS	Acetoacetyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.559311	1477.6561	-1.8242	-0.00090033	-0.63244	-0.00031215	-2.4566	-0.0012125	493.558923841559	9.576	0.097524	9.576	9.5406	9.6381	0	801	25	0.78619514174348	0.0163704683781356	0.78619514174348	476.751301436315	0	9.92710548565657						205	12	4	NaN	NaN	NaN	0.001981	1	17808	30.349	25.198	1	45967			6412	2170	5458	5600	6412	6412		
FPGYDSESK	9	Unmodified	_FPGYDSESK_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.229822	1028.44509	1.2566	0.00064742	2.2293	0.0011486	3.4859	0.001796	515.230283593399	5.0351	0.19506	5.0351	4.9642	5.1593	0	693	31	0.85967808974117	0.0203637344294858	0.85967808974117	348.947930213631	0	8.26574861612272						219	23	2	NaN	NaN	NaN	0.062529	1	4942	43.734	40.594	1	54462			6413	1086	5459	5601	6413	6413		
FPLFGGWK	8	Unmodified	_FPLFGGWK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.257988	950.501424	-0.75573	-0.00035992	-1.292	-0.00061533	-2.0477	-0.00097525	476.257392445856	15.42	0.31046	15.42	15.331	15.642	0	741	58	0.827064408645228	0.038785319725911	0.827064408645228	336.073202620251	0	15.7602074018502						1269	36	4	NaN	NaN	NaN	0.0146	1	3260	51.456	17.644	1	931160			6414	518	5460	5602	6414	6414		
FPLMLDMYELCTPELQEK	18	Unmodified	_FPLMLDMYELCTPELQEK_			0	0	0	P54578	P54578	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1129.0331	2256.05165	0.56406	0.00063684	0.96543	0.00109	1.5295	0.0017268	1129.53572636866	19.392	0.16849	19.392	19.33	19.499	0	81	43	1.2692388538616	0.0277221165708879	1.2692388538616	511.471063936324	0	11.1713098081891						404	20	3	NaN	NaN	NaN	0.02695	1	35241	29.115	25.161	1	68495			6415	1252	5461	5603	6415	6415		
FPLTTESAMK	10	Unmodified	_FPLTTESAMK_			0	0	0	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.78645	1123.55835	1.3208	0.00074332	-2.7663	-0.0015568	-1.4455	-0.0008135	562.786160332839	8.3342	0.50565	8.3342	8.2277	8.7334	0	624	85	0.906433495720521	0.0568210377484628	0.906433495720521	367.514573410732	0	23.0381594981571						1322	58	4	NaN	NaN	NaN	0.00055671	1	7359	106.93	89.531	1	1302500			6416	1395	5462	5604	6416	6416		
FPNLVDPWTPHLYAR	15	Unmodified	_FPNLVDPWTPHLYAR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.317656	1824.93114	0.048143	2.9334E-05	-1.1884	-0.00072411	-1.1403	-0.00069477	609.316824581975	15.588	0.22179	15.588	15.455	15.677	0	648	49	0.890187667287968	0.0324961712839548	0.890187667287968	538.859759159245	0	19.6709971112246						526	26	4	NaN	NaN	NaN	0.00033654	1	27855	44.82	37.964	1	119960			6417	1794	5463	5605	6417	6417		
FPQIGELILK	10	Unmodified	_FPQIGELILK_			0	0	0	Q9HCG8	Q9HCG8	Q9HCG8	CWC22	Pre-mRNA-splicing factor CWC22 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.569142	1156.6856	-1.8947	-0.00073243	-4.7312	-0.0018289	-6.6259	-0.0025614	386.5674133735	8.6891	0.079895	8.6891	8.6446	8.7245	0	852	25	0.751366682244005	0.0164092837353766	0.751366682244005	456.800486206345	0	9.97617936189471						111	10	2	NaN	NaN	NaN	0.04862	1	8258	36.211	11.39	1	26745			6418	2963	5464	5606	6418	6418		
FPQLDSTSFANSR	13	Unmodified	_FPQLDSTSFANSR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.354605	1468.69466	1.8147	0.0013345	2.0776	0.0015277	3.8923	0.0028622	735.355838280965	11.083	0.29262	11.083	10.942	11.234	0	456	37	1.01965166402748	0.024173890872869	1.01965166402748	412.239328075654	0	9.7733656325766						710	34	4	NaN	NaN	NaN	3.9416E-05	1	17537	93.772	36.74	1	458430			6419	1127	5465	5607	6419	6419		
FPSHFSSDLK	10	Unmodified	_FPSHFSSDLK_			0	0	0	P17612;P22694	P17612;P22694	P17612	PRKACA;PRKACB	cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.787838	1163.56112	1.0814	0.00063022	1.8781	0.0010945	2.9594	0.0017247	582.789096745797	6.5959	0.21281	6.5959	6.5249	6.7377	0	606	37	0.918606045818476	0.0243349817538098	0.918606045818476	372.294691580188	0	9.86253527057062						392	25	3	NaN	NaN	NaN	0.00057327	1	8432	92.732	72.498	1	121230			6420	738;810	5466	5608	6420	6420		
FPSINHD	7	Unmodified	_FPSINHD_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.195585	828.376617	-0.74918	-0.00031106	-0.50149	-0.00020821	-1.2507	-0.00051927	415.195381369707	6.0195	0.19515	6.0195	5.9573	6.1525	8.8818E-16	822	34	0.771863999559055	0.0225297797973347	0.771863999559055	314.301035985075	0	9.17406840436036						271	23	3	NaN	NaN	NaN	0.020595	1	1281	58.687	38.339	1	94074			6421	741	5467	5609	6421	6421		
FPSLLTHNENMVAK	14	Unmodified	_FPSLLTHNENMVAK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.276581	1599.80791	-0.33125	-0.00017698	-0.51517	-0.00027524	-0.84642	-0.00045222	534.276633650866	10.037	0.56746	10.037	9.6558	10.223	0	765	79	0.810730346695089	0.0530783586526588	0.810730346695089	491.281560878422	0	32.1641085646324						1887	65	6	NaN	NaN	NaN	0.00010706	1	21577	88.734	69.41	1	1606300			6422	1413	5468	5610	6422	6422		
FPSLLTHNENMVAK	14	Unmodified	_FPSLLTHNENMVAK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.911233	1599.80791	2.6755	0.0021428	-1.3347	-0.0010689	1.3408	0.0010739	800.910560221402	10.01	0.39013	10.01	9.78	10.17	0	321	76	1.10999792833052	0.0500817189530267	1.10999792833052	448.422393487922	0	20.2322578355465						1610	45	4	NaN	NaN	NaN	1.0952E-09	1	21578	145.08	116.43	1	603160			6423	1413	5468	5610	6423	6423		
FPSVCEK	7	Unmodified	_FPSVCEK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.707471	865.400389	-1.2427	-0.00053895	1.2259	0.0005317	-0.01672	-7.2514E-06	433.707774686417	4.9731	0.15072	4.9731	4.9287	5.0795	0	807	31	0.782101955086014	0.0204687855658668	0.782101955086014	318.248016892138	0	8.32902970279764						167	18	2	NaN	NaN	NaN	0.046434	1	1782	46.835	30.288	1	39739			6424	3136	5469	5611	6424	6424		
FPTLTNINENNPTLLNPIK	19	Unmodified	_FPTLTNINENNPTLLNPIK_			0	0	0	P03915	P03915	P03915	MT-ND5	NADH-ubiquinone oxidoreductase chain 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.08369	2152.15282	0.67952	0.0007319	-0.011972	-1.2894E-05	0.66755	0.000719	1077.5851602731	16.262	0.18619	16.262	16.165	16.351	0	120	52	1.2434810169581	0.0337064148139927	1.2434810169581	501.239368830975	0	13.5868435919114						480	22	3	NaN	NaN	NaN	0.0066368	1	34071	33.526	32.432	1	114030			6425	499	5470	5612	6425	6425		
FPTYPVPHYSFF	12	Unmodified	_FPTYPVPHYSFF_			0	0	0	Q96SI9	Q96SI9	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.36117	1500.70779	0.23496	0.00017654	1.3281	0.00099786	1.563	0.0011744	751.362260560556	17.149	0.20394	17.149	17.025	17.229	0	441	34	1.02971785871157	0.0221425729106015	1.02971785871157	416.226141968584	0	8.95033296535189						371	24	3	NaN	NaN	NaN	2.9872E-07	1	18539	134.66	119.51	1	73971			6426	2622	5471	5613	6426	6426		
FPVVAMGVLK	10	Unmodified	_FPVVAMGVLK_			0	0	0	Q8IXH7	Q8IXH7	Q8IXH7	NELFCD	Negative elongation factor C/D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.814813	1059.61507	-0.44605	-0.00023677	-3.0471	-0.0016174	-3.4931	-0.0018542	530.814019851468	13.992	0.16845	13.992	13.948	14.116	0	672	25	0.873923798053065	0.0162751600009597	0.873923798053065	354.592515112141	0	6.6036076960595						194	20	3	NaN	NaN	NaN	0.0053491	1	5727	75.243	60.708	1	53489			6427	2211	5472	5614	6427	6427		
FPYLALSK	8	Unmodified	_FPYLALSK_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.770929	937.527304	-1.0426	-0.0004898	-1.0374	-0.00048732	-2.08	-0.00097712	469.770223122746	12.112	0.29264	12.112	12.006	12.298	0	738	43	0.829104889055312	0.0285607760310633	0.829104889055312	336.968790260885	0	11.6078077395796						716	34	4	NaN	NaN	NaN	0.00089526	1	3035	108.92	71.316	1	398270			6428	613	5473	5615	6428	6428		
FQDDNVEGDK	10	Unmodified	_FQDDNVEGDK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.75165	1165.48875	1.285	0.00075012	1.4198	0.00082883	2.7048	0.0015789	583.752463806119	3.2351	0.19508	3.2351	3.1996	3.3947	0	663	25	0.880024865079826	0.0162683841309829	0.880024865079826	356.651516802961	0	6.59315901911697						239	23	3	NaN	NaN	NaN	0.00087166	1	8480	67.881	58.488	1	42693			6429	2422	5474	5616	6429	6429		
FQDELESGK	9	Unmodified	_FQDELESGK_			0	0	0	O15042	O15042	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.748379	1051.4822	1.0039	0.00052882	5.0927	0.0026825	6.0966	0.0032114	526.750750695653	4.7603	0.21281	4.7603	4.645	4.8578	0	678	37	0.869855008346864	0.024412742353751	0.869855008346864	352.976598404869	0	9.9063943658129						278	25	3	NaN	NaN	NaN	0.001557	1	5500	67.507	56.679	1	90317			6430	140	5475	5617	6430	6430		
FQDGVLEPDFPR	12	Unmodified	_FQDGVLEPDFPR_			0	0	0	CON__Q3ZBS7	CON__Q3ZBS7	CON__Q3ZBS7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.348791	1418.68303	1.5112	0.0010735	7.6211	0.0054136	9.1323	0.0064871	710.355126047305	12.414	0.2128	12.414	12.316	12.529	0	441	49	1.02971785871157	0.0322185054318638	1.02971785871157	416.445949706636	0	13.030041170199						396	25	2	NaN	NaN	NaN	0.034468	1	16055	50.09	25.269	1	159920		+	6431	43	5476	5618	6431	6431		
FQDLGAAYEVLSDSEK	16	Unmodified	_FQDLGAAYEVLSDSEK_			0	0	0	Q9UBS4	Q9UBS4	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.422881	1770.83121	2.6562	0.0023545	0.79612	0.0007057	3.4523	0.0030602	886.924309092838	14.524	0.33694	14.524	14.356	14.693	0	264	55	1.14797626962532	0.0359423767491323	1.14797626962532	463.380421417052	0	14.5081341186427						811	39	4	NaN	NaN	NaN	1.7696E-08	1	26437	127.07	119.51	1	514190			6432	3187	5477	5619	6432	6432		
FQDLGVK	7	Unmodified	_FQDLGVK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	403.723978	805.433404	-1.4091	-0.00056889	-1.1754	-0.00047453	-2.5845	-0.0010434	403.723340881056	5.5671	0.21287	5.5671	5.5228	5.7357	0	825	25	0.769815552739974	0.016391000507895	0.769815552739974	313.612220318899	0	6.6774671468159						155	25	2	NaN	NaN	NaN	0.06995	1	1037	33.813	17.265	1	32686			6433	3215	5478	5620	6433	6433		
FQDQVLDLLK	10	Unmodified	_FQDQVLDLLK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.840071	1217.66559	0.65096	0.00039698	0.92365	0.00056328	1.5746	0.00096026	609.840590803465	15.322	0.10642	15.322	15.278	15.384	0	477	37	1.0055473068722	0.0241905964234823	1.0055473068722	407.318245060961	0	9.79891370087785						235	13	3	NaN	NaN	NaN	2.804E-05	1	9963	124.81	92.853	1	82505			6434	3067	5479	5621	6434	6434		
FQDRSNPGTFMR	12	Unmodified	_FQDRSNPGTFMR_			0	0	1	O43823	O43823	O43823	AKAP8	A-kinase anchor protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.898104	1454.67248	-1.1506	-0.00055905	4.8215	0.0023428	3.671	0.0017837	485.900156703458	8.0858	0.15084	8.0858	8.0502	8.2011	0	783	28	0.798467866007927	0.0184001219300317	0.798467866007927	484.264368643573	0	11.1595266494082						311	18	4	NaN	NaN	NaN	0.049629	1	17091	18.336	0	1	114120			6435	237	5480	5622	6435	6435		
FQDTAEALAAFTALMEGK	18	Unmodified	_FQDTAEALAAFTALMEGK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.469309	1912.92406	1.1233	0.0010755	1.7108	0.0016381	2.8341	0.0027136	957.972054014968	20.066	0.053217	20.066	20.057	20.111	0	213	40	1.18187287897418	0.0258889011438428	1.18187287897418	476.787372335132	0	10.4440176000404						146	7	4	NaN	NaN	NaN	3.4142E-06	1	29904	98.895	85.118	1	56915			6436	3357	5481	5623	6436	6436		
FQDVGPQAPVGSVYQK	16	Unmodified	_FQDVGPQAPVGSVYQK_			0	0	0	Q9UJU6	Q9UJU6	Q9UJU6	DBNL	Drebrin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.438669	1718.86278	3.0426	0.002618	-2.588	-0.0022268	0.45461	0.00039117	860.435894301581	8.9198	0.12432	8.9198	8.8753	8.9996	0	339	40	1.09798411722691	0.0260388926708219	1.09798411722691	443.305196510789	0	10.5130632139887						423	15	4	NaN	NaN	NaN	1.4381E-06	1	25029	96.27	94.287	1	141830			6437	3249	5482	5624	6437	6437		
FQEAEERPK	9	Unmodified	_FQEAEERPK_			0	0	1	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.28292	1132.55129	1.4881	0.00084417	-1.2799	-0.00072604	0.20824	0.00011813	567.282105958955	2.2064	0.13302	2.2064	2.171	2.304	0	657	22	0.884090832094921	0.0142298979470937	0.884090832094921	358.421206899058	0	5.7689741948372						119	16	2	NaN	NaN	NaN	0.00015446	1	7598	126.82	94.697	1	24736			6438	2415	5483	5625	6438	6438		
FQEAEERPK	9	Unmodified	_FQEAEERPK_			0	0	1	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.524372	1132.55129	-0.21023	-7.9577E-05	0.51819	0.00019615	0.30796	0.00011657	378.524636865316	2.1887	0.11528	2.1887	2.171	2.2862	0	897	19	0.720567078607086	0.0123310143860629	0.720567078607086	438.185331662165	0	7.49863515681676						98	14	2	NaN	NaN	NaN	0.043725	1	7599	34.931	25.538	1	17913			6439	2415	5483	5625	6439	6439		
FQEAGELYNR	10	Unmodified	_FQEAGELYNR_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.793652	1225.57275	1.3891	0.00085265	2.0168	0.0012379	3.4059	0.0020905	613.794654850979	6.2589	0.13308	6.2589	6.1879	6.321	0	573	34	0.940896116921038	0.0222746380512064	0.940896116921038	381.102345573842	0	9.02216159197462						318	16	4	NaN	NaN	NaN	0.00070422	1	10158	98.009	80.539	1	93914			6440	1766	5484	5626	6440	6440		
FQEDIISIWNK	11	Unmodified	_FQEDIISIWNK_			0	0	0	O60573	O60573	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.861534	1391.70852	0.66888	0.00046612	0.70864	0.00049382	1.3775	0.00095994	696.861228807434	15.26	0.11526	15.26	15.189	15.304	0	477	28	1.0055473068722	0.0181416924529938	1.0055473068722	406.746838345145	0	7.3383678689749						127	14	2	NaN	NaN	NaN	0.014811	1	15202	53.028	23.718	1	34135			6441	269	5485	5627	6441	6441		
FQEHIIQAPK	10	Unmodified	_FQEHIIQAPK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.224146	1209.65061	-2.3509	-0.00095029	-0.54697	-0.0002211	-2.8979	-0.0011714	404.223515241663	5.8864	0.097546	5.8864	5.8421	5.9396	0	792	49	0.792332785124922	0.0327455032582672	0.792332785124922	481.458015521661	0	19.8976810147995						227	12	3	NaN	NaN	NaN	0.038468	1	9727	23.053	12.351	1	67126			6442	3213	5486	5628	6442	6442		
FQEHIIQAPK	10	Unmodified	_FQEHIIQAPK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.83258	1209.65061	1.522	0.00092206	1.0961	0.00066408	2.6181	0.0015861	605.833447259026	5.8953	0.23949	5.8953	5.8421	6.0815	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.811783820694	0	11.4471478347734						650	28	5	NaN	NaN	NaN	2.0422E-07	1	9729	104.39	86.924	1	478650			6443	3213	5486	5628	6443	6443		
FQEHLQLQNLGINPANIGFSTLTMESDK	28	Unmodified	_FQEHLQLQNLGINPANIGFSTLTMESDK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1049.19228	3144.555	2.0577	0.0021589	-0.63546	-0.00066672	1.4222	0.0014922	1049.52626829001	18.178	0.097538	18.178	18.133	18.231	0	351	79	1.08996939197032	0.0521029328719234	1.08996939197032	657.70326161155	0	31.4396616472371						886	12	5	NaN	NaN	NaN	6.1613E-10	1	38410	97.945	97.621	1	221230			6444	1503	5487	5629	6444	6444		
FQEHLQLQNLGINPANIGFSTLTMESDK	28	Oxidation (M)	_FQEHLQLQNLGINPANIGFSTLTM(Oxidation (M))ESDK_	FQEHLQLQNLGINPANIGFSTLTM(1)ESDK	FQEHLQLQNLGINPANIGFSTLTM(81)ESDK	0	1	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1054.52391	3160.54991	2.1749	0.0022935	-1.1211	-0.0011822	1.0539	0.0011113	1054.85686076014	17.539	0.079801	17.539	17.495	17.575	0	348	52	1.09197348738011	0.0340602471110185	1.09197348738011	658.897868822478	0	20.5519863736444						388	10	5	NaN	NaN	NaN	3.8219E-15	1	38422	80.82	78.324	1	65444			6445	1503	5487	5630	6445	6445	530	
FQELIFEDFAR	11	Unmodified	_FQELIFEDFAR_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.853709	1413.69287	0.96367	0.00068213	1.7782	0.0012587	2.7419	0.0019409	707.854628758485	16.617	0.23941	16.617	16.519	16.759	0	462	55	1.01562323939346	0.036265853684099	1.01562323939346	410.759722760528	0	14.6673997080362						641	28	4	NaN	NaN	NaN	0.00039655	1	15873	85.622	72.348	1	210380			6446	2633	5488	5631	6446	6446		
FQELLQDLEK	10	Unmodified	_FQELLQDLEK_			0	0	0	Q8TAE8	Q8TAE8	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.834985	1261.65542	1.5933	0.0010067	0.10695	6.7573E-05	1.7002	0.0010742	631.83506027741	12.972	0.15072	12.972	12.901	13.052	0	486	40	0.999498404980629	0.0262227841979634	0.999498404980629	404.709762480497	0	10.6179426714951						395	18	4	NaN	NaN	NaN	5.4784E-05	1	11275	94.804	40.368	1	142600			6447	2332	5489	5632	6447	6447		
FQESEERPK	9	Unmodified	_FQESEERPK_			0	0	1	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.280377	1148.5462	0.89713	0.0005161	0.16691	9.6017E-05	1.064	0.00061212	575.280344218158	2.0823	0.20395	2.0823	2.0468	2.2508	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	360.008823267083	0	6.58972270497281						154	24	2	NaN	NaN	NaN	0.00014173	1	8018	133.98	68.821	1	28270			6448	955	5490	5633	6448	6448		
FQESEERPK	9	Unmodified	_FQESEERPK_			0	0	1	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	383.85601	1148.5462	-0.82135	-0.00031528	2.6894	0.0010323	1.8681	0.00071706	383.857037655621	2.0823	0.14187	2.0823	2.0557	2.1976	0	894	16	0.722622390967862	0.0102751283393935	0.722622390967862	439.361701481438	0	6.24738165681447						79	17	2	NaN	NaN	NaN	0.00023702	1	8020	82.716	17.56	1	14068			6449	955	5490	5633	6449	6449		
FQEYHIQQNEALAAK	15	Unmodified	_FQEYHIQQNEALAAK_			0	0	0	Q9Y5J7	Q9Y5J7	Q9Y5J7	TIMM9	Mitochondrial import inner membrane translocase subunit Tim9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.447025	1788.8795	2.0233	0.0018118	-0.1561	-0.00013978	1.8672	0.001672	895.446971858647	7.0747	0.079904	7.0747	7.0481	7.128	0	204	46	1.18784641916898	0.0298677085793482	1.18784641916898	479.436419775561	0	12.0551504277805						269	10	4	NaN	NaN	NaN	1.1938E-11	1	26942	130.78	108.64	1	69534			6450	3432	5491	5634	6450	6450		
FQFDGDK	7	Unmodified	_FQFDGDK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.695418	855.376283	-0.85608	-0.000367	-0.97526	-0.00041809	-1.8313	-0.00078509	428.694877290596	5.5228	0.25714	5.5228	5.4697	5.7268	0	825	31	0.769815552739974	0.0204887515295875	0.769815552739974	313.305804424596	0	8.3386789949688						401	30	4	NaN	NaN	NaN	0.02218	1	1639	58.286	37.627	1	138060			6451	1205	5492	5635	6451	6451		
FQFLYDVQVPIVDK	14	Unmodified	_FQFLYDVQVPIVDK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.958706	1709.90286	1.1727	0.0010038	1.5723	0.0013458	2.7449	0.0023496	856.461905884536	18.098	0.079775	18.098	18.062	18.142	0	294	43	1.12800004657306	0.0279898124125677	1.12800004657306	455.443041548222	0	11.3012099035568						234	10	4	NaN	NaN	NaN	0.0039825	1	24759	56.938	39.946	1	49886			6452	2083	5493	5636	6452	6452		
FQFNLQDFR	9	Unmodified	_FQFNLQDFR_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.80128	1213.58801	0.15902	9.6651E-05	1.7376	0.0010561	1.8966	0.0011528	607.801279751845	15.03	0.13301	15.03	14.95	15.083	0	567	31	0.944945209309785	0.020242660886354	0.944945209309785	382.784491187644	0	8.20002744214855						219	16	3	NaN	NaN	NaN	4.4257E-05	1	9828	125.5	93.37	1	51193			6453	1883	5494	5637	6453	6453		
FQFVSGADEK	10	Unmodified	_FQFVSGADEK_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.272021	1126.52949	0.56852	0.0003208	1.4629	0.00082545	2.0314	0.0011463	564.272570275909	7.5181	0.12414	7.5181	7.456	7.5801	0	633	34	0.900343422309015	0.0223333690758126	0.900343422309015	365.033657651624	0	9.05480197824943						220	15	3	NaN	NaN	NaN	0.0011431	1	7426	78.816	31.467	1	77757			6454	2035	5495	5638	6454	6454		
FQGQDTILDYTLR	13	Unmodified	_FQGQDTILDYTLR_			0	0	0	P36639	P36639	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.399012	1568.78347	1.8356	0.0014416	1.1878	0.00093293	3.0234	0.0023746	785.399383972928	14.267	0.097543	14.267	14.214	14.311	0	402	22	1.05585747106793	0.014061585996056	1.05585747106793	426.622852455037	0	5.68163231502405						135	12	2	NaN	NaN	NaN	7.1135E-08	1	20629	124.06	111.46	1	139620			6455	989	5496	5639	6455	6455		
FQHQGFGMLLMEEAER	16	Unmodified	_FQHQGFGMLLMEEAER_			0	0	0	Q9H9T3	Q9H9T3	Q9H9T3	ELP3	Elongator complex protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.634439	1921.88149	-0.48745	-0.00031277	-1.1948	-0.00076662	-1.6822	-0.0010794	641.633834401764	14.072	0.079786	14.072	14.036	14.116	-1.7764E-15	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	521.425428084717	0	11.0860843653745						213	10	4	NaN	NaN	NaN	0.013732	1	30096	47.57	46.951	1	47121			6456	2939	5497	5640	6456	6456		
FQIATVTEK	9	Unmodified	_FQIATVTEK_			0	0	0	P28070	P28070	P28070	PSMB4	Proteasome subunit beta type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.787307	1035.56006	1.2537	0.00065041	-1.1245	-0.00058337	0.12923	6.7043E-05	518.786822408007	7.7931	0.1685	7.7931	7.7487	7.9172	0	675	40	0.871889544407995	0.026448974146953	0.871889544407995	353.872525007415	0	10.7348061750106						357	20	3	NaN	NaN	NaN	0.0010208	1	5133	69.915	30.591	1	312070			6457	873	5498	5641	6457	6457		
FQIGDYLDIAITPPNR	16	Unmodified	_FQIGDYLDIAITPPNR_			0	0	0	O00422	O00422	O00422	SAP18	Histone deacetylase complex subunit SAP18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.980701	1831.94685	1.4517	0.0013312	-0.78351	-0.00071847	0.6682	0.00061273	917.482105538452	18.577	0.204	18.577	18.452	18.656	0	276	40	1.13998907770044	0.0259673060205863	1.13998907770044	460.037114950778	0	10.47898157836						483	24	4	NaN	NaN	NaN	0.00015249	1	28030	77.696	72.88	1	82773			6458	77	5499	5642	6458	6458		
FQIGELANTLTSK	13	Unmodified	_FQIGELANTLTSK_			0	0	0	Q8N3X1	Q8N3X1	Q8N3X1	FNBP4	Formin-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.385374	1420.75619	1.0782	0.00076702	1.9105	0.0013591	2.9887	0.0021261	711.387062024578	14.648	0.088677	14.648	14.622	14.71	0	465	28	1.01360860968299	0.0181341741775967	1.01360860968299	409.925178059843	0	7.33385106214166						127	11	2	NaN	NaN	NaN	0.010653	1	16119	31.801	25.935	1	61373			6459	2250	5500	5643	6459	6459		
FQILDFTSPK	10	Unmodified	_FQILDFTSPK_			0	0	0	Q9BYD6	Q9BYD6	Q9BYD6	MRPL1	39S ribosomal protein L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.321514	1194.62847	0.40542	0.00024257	-3.1977	-0.0019132	-2.7923	-0.0016707	598.322143911894	15.056	0.10641	15.056	14.994	15.101	0	531	40	0.969216233931596	0.0262772407481359	0.969216233931596	392.686431694025	0	10.6464538488927						356	13	4	NaN	NaN	NaN	0.0080273	1	9287	55.235	33.96	1	90338			6460	2800	5501	5644	6460	6460		
FQIPPNAELK	10	Unmodified	_FQIPPNAELK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.821681	1155.62881	0.828	0.00047926	-0.47622	-0.00027564	0.35178	0.00020362	578.821941747715	9.6026	0.35467	9.6026	9.514	9.8686	0	588	46	0.93076847747433	0.0303913445314729	0.93076847747433	377.254250319753	0	12.3180620905227						510	41	3	NaN	NaN	NaN	0.0084266	1	8226	42.075	19.688	1	100040			6461	1530	5502	5645	6461	6461		
FQIYFDNCPLLTIPGR	16	Unmodified	_FQIYFDNCPLLTIPGR_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.498204	1952.98185	1.0496	0.001026	0.44784	0.00043776	1.4975	0.0014638	978.000349611257	18.914	0.12412	18.914	18.851	18.976	0	225	43	1.17390432875292	0.0279014290845747	1.17390432875292	473.502772284119	0	11.2542425295167						303	15	3	NaN	NaN	NaN	0.019004	1	30769	51.569	45.364	1	54643			6462	181	5503	5646	6462	6462		
FQLLEGPPESMGR	13	Unmodified	_FQLLEGPPESMGR_			0	0	0	P31150	P31150	P31150	GDI1	Rab GDP dissociation inhibitor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.863751	1459.71295	1.476	0.0010788	-0.38653	-0.0002825	1.0895	0.00079626	730.863711522347	12.742	0.1685	12.742	12.662	12.83	0	471	61	1.00957851518677	0.0402953966353139	1.00957851518677	408.190259731315	0	16.2921339659275						384	20	3	NaN	NaN	NaN	1.9446E-06	1	17253	106	94.648	1	86076			6463	920	5504	5647	6463	6463		
FQLLVQQVALGTMMHCQTLK	20	Unmodified	_FQLLVQQVALGTMMHCQTLK_			0	0	0	P43897	P43897	P43897	TSFM	Elongation factor Ts, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.742543	2345.2058	0.50079	0.00039199	-0.094599	-7.4047E-05	0.40619	0.00031794	783.409761224091	16.927	0.19512	16.927	16.883	17.078	0	411	61	1.04982941439551	0.0401676649584974	1.04982941439551	634.432640423588	0	24.274112908089						591	23	5	NaN	NaN	NaN	1.2129E-05	1	36004	73.305	65.306	1	152870			6464	1069	5505	5648	6464	6464		
FQMPDQGMTSADDFFQGTK	19	Unmodified	_FQMPDQGMTSADDFFQGTK_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1075.96152	2149.90849	1.3897	0.0014952	2.8073	0.0030205	4.1969	0.0045157	1076.46636335385	15.198	0.070959	15.198	15.171	15.242	0	144	67	1.22760721615852	0.0436948971635023	1.22760721615852	494.844043306091	0	17.6132555263828						427	9	4	NaN	NaN	NaN	0.038555	1	34009	22.039	18.399	1	84510			6465	1889	5506	5649	6465	6465		
FQMQVLPQCGHAVHEDAPDK	20	Unmodified	_FQMQVLPQCGHAVHEDAPDK_			0	0	0	Q9Y570	Q9Y570	Q9Y570	PPME1	Protein phosphatase methylesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	577.521582	2306.05722	0.35384	0.00020435	1.4817	0.00085574	1.8356	0.0010601	577.773775462562	7.9261	0.12412	7.9261	7.864	7.9881	0	624	25	0.906433495720521	0.0162390708699242	0.906433495720521	730.438611950777	0	13.0860614061587						261	15	4	NaN	NaN	NaN	0.0020284	1	35678	52.201	51.107	1	63324			6466	3424	5507	5650	6466	6466		
FQMTQEVVCDECPNVK	16	Unmodified	_FQMTQEVVCDECPNVK_			0	0	0	Q9UBS4	Q9UBS4	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.434086	1982.85362	2.9405	0.0029183	-1.6937	-0.0016809	1.2468	0.0012374	992.433065651252	9.842	0.097533	9.842	9.8066	9.9041	0	243	46	1.16194328902838	0.0299211058430284	1.16194328902838	468.628383770378	0	12.0676108758853						389	12	5	NaN	NaN	NaN	6.4904E-09	1	31327	97.084	92.777	1	91016			6467	3187	5508	5651	6467	6467		
FQNIDFAEEVYTR	13	Unmodified	_FQNIDFAEEVYTR_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.388645	1630.76274	2.0859	0.0017029	0.94966	0.00077529	3.0356	0.0024782	816.389624241044	13.292	0.097531	13.292	13.256	13.354	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	441.068903412251	0	9.71457887224039						211	12	2	NaN	NaN	NaN	2.4135E-05	1	22504	87.573	80.717	1	114470			6468	3353	5509	5652	6468	6468		
FQNVADLHLYLYSAK	15	Unmodified	_FQNVADLHLYLYSAK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.464687	1780.91482	1.9373	0.001727	-0.082848	-7.3856E-05	1.8544	0.0016531	891.464386854295	13.708	0.28374	13.708	13.664	13.948	1.7764E-15	192	52	1.1958073123591	0.0338268396719554	1.1958073123591	482.666183683192	0	13.6535973996644						783	33	5	NaN	NaN	NaN	9.1426E-09	1	26709	117.41	104.23	1	226320			6469	1035	5510	5653	6469	6469		
FQNVADLHLYLYSAK	15	Unmodified	_FQNVADLHLYLYSAK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.64555	1780.91482	0.51535	0.00030645	2.0574	0.0012234	2.5728	0.0015299	594.981170475475	13.708	0.20392	13.708	13.664	13.868	0	579	43	0.936845902828289	0.0283554323651288	0.936845902828289	567.209093421733	0	17.167667635468						350	24	4	NaN	NaN	NaN	0.0021827	1	26710	44.045	32.563	1	93551			6470	1035	5510	5653	6470	6470		
FQPASAPAEDCISSSTEPKPDPK	23	Unmodified	_FQPASAPAEDCISSSTEPKPDPK_			0	0	1	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.384683	2458.13222	1.2776	0.0010481	1.0933	0.0008969	2.3709	0.001945	820.720090730869	6.9949	0.079797	6.9949	6.9594	7.0392	-8.8818E-16	489	28	0.997481546940468	0.0181517240953996	0.997481546940468	602.634732258	0	10.9664779501982						188	10	4	NaN	NaN	NaN	0.066479	1	36612	18.361	18.296	1	43776			6471	1713	5511	5654	6471	6471		
FQPGETLTEILETPATSEQEAEHQR	25	Unmodified	_FQPGETLTEILETPATSEQEAEHQR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.789425	2840.34645	1.8062	0.0017119	0.18195	0.00017245	1.9881	0.0018843	948.123823912547	15.863	0.15963	15.863	15.801	15.961	0	351	154	1.08996939197032	0.102420750101094	1.08996939197032	658.013555940404	0	61.8313160650107						2270	19	6	NaN	NaN	NaN	0.00011258	1	37983	26.931	25.834	1	641790			6472	1095	5512	5655	6472	6472		
FQPLFGDFAAEK	12	Unmodified	_FQPLFGDFAAEK_			0	0	0	Q15050	Q15050	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.342978	1368.6714	0.36032	0.00024694	0.6319	0.00043307	0.99222	0.00068001	685.343449819623	14.879	0.25714	14.879	14.826	15.083	0	522	49	0.975277694896658	0.0323210938061441	0.975277694896658	394.568007864993	0	13.0761419663752						572	30	4	NaN	NaN	NaN	0.007147	1	14453	36.952	25.591	1	236320			6473	1802	5513	5656	6473	6473		
FQPLLDGLK	9	Unmodified	_FQPLLDGLK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.800217	1029.58588	0.52804	0.00027237	-1.7679	-0.00091189	-1.2399	-0.00063952	515.79924794855	12.68	0.17739	12.68	12.618	12.795	0	645	67	0.892219381832517	0.0447318703478083	0.892219381832517	362.151334014381	0	18.1566404510792						640	21	3	NaN	NaN	NaN	0.0047803	1	4990	60.589	37.014	1	170430			6474	270	5514	5657	6474	6474		
FQPQSPDFLDITNPK	15	Unmodified	_FQPQSPDFLDITNPK_			0	0	0	Q92890	Q92890	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.938502	1745.86245	2.4023	0.0020995	2.4023	0.0020995	4.8047	0.004199	874.441002122423	14.276	0.22165	14.276	14.205	14.427	0	312	58	1.11600111266355	0.0379992536574683	1.11600111266355	450.523697211316	0	15.3400960400248						538	26	2	NaN	NaN	NaN	0.0055131	1	25773	47.57	33.793	1	240380			6475	2440	5515	5658	6475	6475		
FQPVHDLTIGVEFGAR	16	Unmodified	_FQPVHDLTIGVEFGAR_			0	0	0	P61019;Q8WUD1	P61019	P61019	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.980933	1784.92097	-1.413	-0.00084212	-1.174	-0.00069969	-2.587	-0.0015418	595.980638219462	13.7	0.13298	13.7	13.655	13.788	0	735	22	0.831145085810763	0.0142813781161694	0.831145085810763	503.204310754994	0	8.64644591451599						138	16	2	NaN	NaN	NaN	0.0022056	1	26832	68.108	58.846	1	36632			6476	1322	5516	5659	6476	6476		
FQQDDAHIFCAMEQIEDEIK	20	Unmodified	_FQQDDAHIFCAMEQIEDEIK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.034997	2466.08316	0.38071	0.00031334	-1.2102	-0.00099605	-0.82951	-0.00068272	823.368547326163	18.098	0.12414	18.098	18.053	18.178	0	552	55	0.955063035883597	0.0364267103222841	0.955063035883597	576.996874715197	0	22.007026994473						772	15	6	NaN	NaN	NaN	1.53E-37	1	36656	230.42	214.32	1	305100			6477	857	5517	5660	6477	6477		
FQQQLEQLNAMGFLNR	16	Unmodified	_FQQQLEQLNAMGFLNR_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.328115	1935.96252	-0.070096	-4.5305E-05	-1.7854	-0.001154	-1.8555	-0.0011993	646.325285858881	15.89	0.12414	15.89	15.828	15.952	0	567	22	0.944945209309785	0.0141688807218944	0.944945209309785	571.759047990274	0	8.57318040540713						122	15	3	NaN	NaN	NaN	0.002651	1	30438	58.476	48.898	1	32346			6478	3216	5518	5661	6478	6478		
FQQQLEQLNAMGFLNR	16	Unmodified	_FQQQLEQLNAMGFLNR_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.988534	1935.96252	1.4609	0.0014156	-2.0976	-0.0020325	-0.63667	-0.00061692	968.987023517766	15.899	0.27491	15.899	15.775	16.049	0	222	58	1.17589687683038	0.0378532288836511	1.17589687683038	474.335910039159	0	15.2693200604845						792	32	5	NaN	NaN	NaN	2.1098E-12	1	30439	135.21	110.29	1	175060			6479	3216	5518	5661	6479	6479		
FQQQLEQLSAMGFLNR	16	Unmodified	_FQQQLEQLSAMGFLNR_			0	0	0	Q9UMX0	Q9UMX0	Q9UMX0	UBQLN1	Ubiquilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.483085	1908.95162	1.2186	0.0011644	-4.0827	-0.0039009	-2.8641	-0.0027366	955.97979612794	16.369	0.23941	16.369	16.307	16.546	0	237	67	1.16593139812432	0.0438631962590899	1.16593139812432	470.363379447484	0	17.6954160930777						860	28	5	NaN	NaN	NaN	2.2418E-17	1	29818	183	170.98	1	236940			6480	3289	5519	5662	6480	6480		
FQQQLEQLSAMGFLNR	16	Unmodified	_FQQQLEQLSAMGFLNR_			0	0	0	Q9UMX0	Q9UMX0	Q9UMX0	UBQLN1	Ubiquilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.324482	1908.95162	0.032857	2.094E-05	-0.56473	-0.00035992	-0.53187	-0.00033898	637.324187823278	16.369	0.14189	16.369	16.289	16.431	0	570	37	0.942920803299286	0.0242878309785073	0.942920803299286	570.591525148232	0	14.6973430558305						331	17	5	NaN	NaN	NaN	6.3635E-07	1	29819	124.46	109.48	1	84070			6481	3289	5519	5662	6481	6481		
FQQTQYLALPER	12	Unmodified	_FQQTQYLALPER_			0	0	0	P56179;P56177	P56179	P56179	DLX6;DLX1	Homeobox protein DLX-6;Homeobox protein DLX-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.39099	1492.76743	0.4879	0.00036465	9.1812	0.0068619	9.6691	0.0072266	747.397893351869	11.917	0.17735	11.917	11.864	12.041	0	402	46	1.05585747106793	0.0301319762986474	1.05585747106793	426.812847015817	0	12.1803509873649						391	21	4	NaN	NaN	NaN	0.060076	1	18333	24.821	12.864	1	100840			6482	1282	5520	5663	6482	6482		
FQSISTEFLALMK	13	Unmodified	_FQSISTEFLALMK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.899802	1513.78505	0.91141	0.00069075	1.8474	0.0014001	2.7588	0.0020909	758.403437364951	18.63	0.088678	18.63	18.603	18.692	0	399	43	1.0578662689527	0.0281289969730538	1.0578662689527	427.570357680265	0	11.3692303554237						214	11	3	NaN	NaN	NaN	0.00031574	1	18929	77.358	56.27	1	103370			6483	1737	5521	5664	6483	6483		
FQSLNADINK	10	Unmodified	_FQSLNADINK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.29857	1148.58259	1.2685	0.00072978	0.40848	0.000235	1.677	0.00096478	575.298865555149	6.7998	0.16847	6.7998	6.7466	6.9151	0	609	34	0.916577990479294	0.0223086119453004	0.916577990479294	371.529507329245	0	9.04266488103502						340	20	3	NaN	NaN	NaN	3.3813E-07	1	8031	122.44	61.727	1	212520			6484	916	5522	5665	6484	6484		
FQSSHHPTDITSLDQYVER	19	Unmodified	_FQSSHHPTDITSLDQYVER_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	565.771182	2259.05562	0.75849	0.00042913	0.468	0.00026478	1.2265	0.00069391	566.022370673212	9.6381	0.20396	9.6381	9.5938	9.7977	0	675	37	0.871889544407995	0.024412742353751	0.871889544407995	702.689196530123	0	19.6751646119371						640	24	6	NaN	NaN	NaN	4.839E-06	1	35260	93.026	87.41	1	545710			6485	700	5523	5666	6485	6485		
FQSSHHPTDITSLDQYVER	19	Unmodified	_FQSSHHPTDITSLDQYVER_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1130.53509	2259.05562	2.3207	0.0026236	-0.97826	-0.001106	1.3424	0.0015176	1131.03525201284	9.647	0.11528	9.647	9.6026	9.7179	0	144	112	1.22760721615852	0.0734617559896182	1.22760721615852	494.690548962134	0	29.6029836904559						827	14	5	NaN	NaN	NaN	5.4694E-06	1	35261	52.662	47.046	1	252180			6486	700	5523	5666	6486	6486		
FQSSHHPTDITSLDQYVER	19	Unmodified	_FQSSHHPTDITSLDQYVER_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.025818	2259.05562	1.6682	0.0012579	0.32702	0.00024658	1.9952	0.0015044	754.360481460347	9.6381	0.1596	9.6381	9.6026	9.7622	0	546	163	0.959108205975751	0.109371310133409	0.959108205975751	579.738122425632	0	66.1100776626836						2410	19	6	NaN	NaN	NaN	1.4066E-26	1	35262	241.14	221.51	1	1477200			6487	700	5523	5666	6487	6487		
FQSVESGANNVVFIR	15	Unmodified	_FQSVESGANNVVFIR_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.931011	1665.84747	1.6106	0.0013432	-0.94707	-0.00078979	0.66356	0.00055336	833.929578860769	11.687	0.11529	11.687	11.642	11.758	0	378	37	1.07192009927972	0.0240806587960416	1.07192009927972	432.892144621679	0	9.7249114342813						273	14	4	NaN	NaN	NaN	3.1944E-07	1	23514	130.99	102.35	1	72122			6488	3103	5524	5667	6488	6488		
FQTEIQTVNK	10	Unmodified	_FQTEIQTVNK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.319502	1206.62445	1.2916	0.00078053	-1.2203	-0.00073746	0.071276	4.3074E-05	604.319069950848	5.9307	0.20402	5.9307	5.8864	6.0904	0	594	37	0.926715457081489	0.024324866464508	0.926715457081489	375.42423753762	0	9.85431329094507						392	24	4	NaN	NaN	NaN	4.4325E-05	1	9645	109.88	67.803	1	154750			6489	705	5525	5668	6489	6489		
FQTIDLSPFLFTR	13	Unmodified	_FQTIDLSPFLFTR_			0	0	0	Q96CU9	Q96CU9	Q96CU9	FOXRED1	FAD-dependent oxidoreductase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.924666	1583.83478	0.28122	0.00022299	1.6347	0.0012962	1.9159	0.0015192	793.427079516317	19.224	0.053192	19.224	19.197	19.25	0	390	52	1.06389100039157	0.0341495757377568	1.06389100039157	429.833081914308	0	13.797106451717						167	7	3	NaN	NaN	NaN	2.2815E-05	1	21090	95.138	79.99	1	36522			6490	2498	5526	5669	6490	6490		
FQTMSDQIIGR	11	Unmodified	_FQTMSDQIIGR_			0	0	0	O75506	O75506	O75506	HSBP1	Heat shock factor-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.324262	1294.63397	1.0825	0.00070182	-0.41235	-0.00026734	0.67016	0.00043448	648.324190010224	9.4076	0.14191	9.4076	9.3455	9.4874	0	519	40	0.97729762293174	0.0262590697317363	0.97729762293174	395.611228970784	0	10.6297023592856						461	17	4	NaN	NaN	NaN	0.0029199	1	12202	72.365	61.005	1	243980			6491	340	5527	5670	6491	6491		
FQVDPSGEIVELAK	14	Unmodified	_FQVDPSGEIVELAK_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.403763	1530.79297	2.0217	0.0015495	1.3547	0.0010382	3.3764	0.0025877	766.40485404501	14.134	0.18621	14.134	14.054	14.24	0	363	55	1.08195024817156	0.0361010836697162	1.08195024817156	437.260641090494	0	14.5899342563658						427	22	2	NaN	NaN	NaN	0.002515	1	19470	68.548	59.571	1	355840			6492	2949	5528	5671	6492	6492		
FQVWDYEEGEVEALLDR	17	Unmodified	_FQVWDYEEGEVEALLDR_			0	0	0	O43598	O43598	O43598	DNPH1	2-deoxynucleoside 5-phosphate N-hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.49183	2096.9691	1.7428	0.0018291	-0.9741	-0.0010223	0.76874	0.00080679	1049.99194976003	19.516	0.06204	19.516	19.49	19.552	0	195	46	1.19381749893585	0.0298472092249094	1.19381749893585	481.301520135028	0	12.0332523057689						185	8	3	NaN	NaN	NaN	6.653E-05	1	33270	57.279	53.639	1	34851			6493	210	5529	5672	6493	6493		
FQWDLNAWTK	10	Unmodified	_FQWDLNAWTK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.822212	1307.62987	0.3158	0.0002068	-0.26735	-0.00017506	0.048457	3.1731E-05	655.323937341456	15.872	0.2749	15.872	15.73	16.005	0	576	73	0.938871150116794	0.0485622378151689	0.938871150116794	380.016266994432	0	19.6559882888303						555	32	4	NaN	NaN	NaN	1.5132E-07	1	12584	159.11	134.99	1	251180			6494	1648	5530	5673	6494	6494		
FRIDELEPR	9	Unmodified	_FRIDELEPR_			0	0	1	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	392.212017	1173.61422	-1.3739	-0.00053887	0.38761	0.00015202	-0.98633	-0.00038685	392.212090611375	9.78	0.19509	9.78	9.6913	9.8864	0	858	28	0.747263789720611	0.0184617312654048	0.747263789720611	454.228978534802	0	11.2220790703698						204	23	2	NaN	NaN	NaN	0.0099036	1	8701	43.734	24.478	1	44850			6495	1771	5531	5674	6495	6495		
FRIDELEPR	9	Unmodified	_FRIDELEPR_			0	0	1	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.814387	1173.61422	1.8931	0.0011128	0.083702	4.9201E-05	1.9768	0.001162	587.814303163927	9.7622	0.30148	9.7622	9.6204	9.9218	0	546	70	0.959108205975751	0.0465549205796969	0.959108205975751	388.67049653096	0	18.8659882012601						870	35	4	NaN	NaN	NaN	0.011584	1	8704	98.009	71.553	1	190730			6496	1771	5531	5674	6496	6496		
FRPDMEEEEAK	11	Unmodified	_FRPDMEEEEAK_			0	0	1	Q99436	Q99436	Q99436	PSMB7	Proteasome subunit beta type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.874853	1379.60273	-0.03686	-1.6988E-05	-1.0045	-0.00046295	-1.0414	-0.00047994	460.874566205866	4.4233	0.15958	4.4233	4.3701	4.5297	0	864	40	0.743159753061487	0.026670665676209	0.743159753061487	450.95111900832	0	16.183823843846						437	19	4	NaN	NaN	NaN	0.00018906	1	14789	74.849	54.666	1	131380			6497	2638	5532	5675	6497	6497		
FRPDMEEEEAK	11	Unmodified	_FRPDMEEEEAK_			0	0	1	Q99436	Q99436	Q99436	PSMB7	Proteasome subunit beta type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.808642	1379.60273	2.5664	0.0017729	-1.356	-0.00093675	1.2104	0.00083613	690.807770179297	4.4145	0.30147	4.4145	4.3613	4.6627	0	501	58	0.98941132619024	0.0383627278189489	0.98941132619024	400.254341282051	0	15.5191758437619						667	35	4	NaN	NaN	NaN	0.0087184	1	14791	86.243	50.002	1	262690			6498	2638	5532	5675	6498	6498		
FRSETITEEELVGLMNK	17	Unmodified	_FRSETITEEELVGLMNK_			0	0	1	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.006707	1994.99829	0.53603	0.000357	0.072344	4.8182E-05	0.60838	0.00040518	666.340820818719	14.196	0.097546	14.196	14.161	14.258	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	576.535641172373	0	12.2388918005195						251	12	4	NaN	NaN	NaN	5.6053E-05	1	31544	89.382	79.361	1	65275			6499	724	5533	5676	6499	6499		
FSACSLQEEK	10	Unmodified	_FSACSLQEEK_			0	0	0	Q9BYI3	Q9BYI3	Q9BYI3	FAM126A	Hyccin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.774071	1197.53359	0.55389	0.00033221	-0.53804	-0.0003227	0.015856	9.5097E-06	599.773602206263	8.6002	0.25734	8.6002	8.5293	8.7866	0	615	31	0.912521036363781	0.0202875850561227	0.912521036363781	369.705624453735	0	8.21946454157359						379	30	3	NaN	NaN	NaN	0.010752	1	9379	47.349	28.093	1	90432			6500	2802	5534	5677	6500	6500		
FSADGMR	7	Unmodified	_FSADGMR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	392.176338	782.338123	-0.29549	-0.00011589	0.49651	0.00019472	0.20102	7.8834E-05	392.176681638872	4.0154	0.2217	4.0154	3.9445	4.1662	0	876	25	0.734948245421186	0.0164275975707774	0.734948245421186	299.555519500049	0	6.69567898843252						239	26	3	NaN	NaN	NaN	0.041853	1	842	42.229	30.58	1	50200			6501	3161	5535	5678	6501	6501		
FSAHYDAVEAELK	13	Unmodified	_FSAHYDAVEAELK_			0	0	0	Q14320;Q9Y247	Q14320	Q14320	FAM50A;FAM50B	Protein FAM50A;Protein FAM50B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.908663	1478.70416	-1.4799	-0.00073092	-0.10999	-5.4327E-05	-1.5899	-0.00078525	493.908667713927	8.68	0.15982	8.68	8.6357	8.7955	0	795	55	0.790287188799094	0.0368233111700704	0.790287188799094	479.229582787538	0	22.3296294043489						425	19	4	NaN	NaN	NaN	0.00030457	1	17848	78.043	68.528	1	133750			6502	1747	5536	5679	6502	6502		
FSALQQAVPTESTDNR	16	Unmodified	_FSALQQAVPTESTDNR_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.431572	1762.84859	2.8193	0.0024878	-2.7613	-0.0024367	0.057961	5.1146E-05	882.42974419768	8.7422	0.16869	8.7422	8.6623	8.831	0	354	37	1.08796502040166	0.0240574350512286	1.08796502040166	439.172352382059	0	9.71112135556172						502	20	4	NaN	NaN	NaN	0.00011346	1	26219	91.939	63.612	1	142370			6503	1544	5537	5680	6503	6503		
FSAMHEFQNLHAQSK	15	Unmodified	_FSAMHEFQNLHAQSK_			0	0	0	P13807	P13807	P13807	GYS1	Glycogen [starch] synthase, muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.92012	1773.82569	2.5879	0.0022979	-1.1591	-0.0010292	1.4288	0.0012687	888.419775061596	7.394	0.079781	7.394	7.3408	7.4205	0	276	22	1.13998907770044	0.013986241072184	1.13998907770044	460.150364717585	0	5.6454698174615						67	10	2	NaN	NaN	NaN	0.0046753	1	26501	35.845	31.863	1	11939			6504	686	5538	5681	6504	6504		
FSAMHEFQNLHAQSK	15	Unmodified	_FSAMHEFQNLHAQSK_			0	0	0	P13807	P13807	P13807	GYS1	Glycogen [starch] synthase, muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.282506	1773.82569	0.52479	0.00031082	1.8531	0.0010975	2.3779	0.0014084	592.283419753676	7.4028	0.15959	7.4028	7.3585	7.5181	0	675	28	0.871889544407995	0.0183082845696197	0.871889544407995	527.89784257793	0	11.085009549194						241	19	5	NaN	NaN	NaN	0.00081	1	26502	67.887	55.305	1	54443			6505	686	5538	5681	6505	6505		
FSAPVVPSSFNFGGPAPGMN	20	Unmodified	_FSAPVVPSSFNFGGPAPGMN_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.469643	1978.92473	1.323	0.0013104	1.4094	0.001396	2.7324	0.0027064	990.972290053114	18.115	0.14185	18.115	18.045	18.186	0	222	79	1.17589687683038	0.0518312112906032	1.17589687683038	474.262600733494	0	20.9045585120595						757	17	5	NaN	NaN	NaN	5.8823E-06	1	31266	88.42	80.844	1	208370			6506	429	5539	5682	6506	6506		
FSAPVVPSSFNFGGPAPGMN	20	Oxidation (M)	_FSAPVVPSSFNFGGPAPGM(Oxidation (M))N_	FSAPVVPSSFNFGGPAPGM(1)N	FSAPVVPSSFNFGGPAPGM(64)N	0	1	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.4671	1994.91965	1.1261	0.0011244	-1.8976	-0.0018947	-0.77155	-0.00077036	998.966624538203	17.158	0.133	17.158	17.122	17.255	0	222	67	1.17589687683038	0.0438511426752775	1.17589687683038	474.236125684297	0	17.6850508058222						705	16	5	NaN	NaN	NaN	0.0023153	1	31535	63.766	59.212	1	163290			6507	429	5539	5683	6507	6507	62	
FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP	31	Unmodified	_FSAVLVEPPPMSLPGAGLSSQELSGGPGDGP_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	984.154939	2949.44299	0.82577	0.00081269	-3.4431	-0.0033885	-2.6173	-0.0025758	984.486513770126	19.658	0.079808	19.658	19.623	19.703	0	438	34	1.03173026378327	0.022130347528504	1.03173026378327	622.742377891328	0	13.3576630707006						200	10	4	NaN	NaN	NaN	0.011258	1	38146	50.819	50.694	1	32199			6508	1648	5540	5684	6508	6508		
FSCPETDSHR	10	Unmodified	_FSCPETDSHR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.508505	1234.50368	0.14145	5.8351E-05	0.23216	9.5767E-05	0.37361	0.00015412	412.508914884509	2.6941	0.13301	2.6941	2.6321	2.7651	0	894	31	0.722622390967862	0.0205516922438366	0.722622390967862	438.999188642534	0	12.4853261302785						148	16	2	NaN	NaN	NaN	0.00043472	1	10446	79.059	78.169	1	27515			6509	1163	5541	5685	6509	6509		
FSCPETDSHR	10	Unmodified	_FSCPETDSHR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.259119	1234.50368	2.3773	0.0014698	1.3538	0.000837	3.7311	0.0023068	618.259993197451	2.6941	0.11529	2.6941	2.6498	2.7651	0	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	373.686376942083	0	6.56877370871911						79	14	2	NaN	NaN	NaN	0.012437	1	10447	30.918	28.55	1	13495			6510	1163	5541	5685	6510	6510		
FSDAIQSK	8	Unmodified	_FSDAIQSK_			0	0	0	Q14789	Q14789	Q14789	GOLGB1	Golgin subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.229625	894.444697	-1.6596	-0.00074389	-2.3124	-0.0010365	-3.972	-0.0017804	448.228684124797	9.2923	0.10645	9.2923	9.2479	9.3544	0	825	22	0.769815552739974	0.0143411262073633	0.769815552739974	313.089733989528	0	5.83264312261849						122	13	3	NaN	NaN	NaN	0.051181	1	2243	27.705	11.157	1	25438			6511	1775	5542	5686	6511	6511		
FSDDAFNTTFISTIGIDFK	19	Unmodified	_FSDDAFNTTFISTIGIDFK_			0	0	0	P61026	P61026	P61026	RAB10	Ras-related protein Rab-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.01768	2138.0208	0.39123	0.00041862	1.5889	0.0017002	1.9802	0.0021188	1070.52062469304	19.818	0.044336	19.818	19.809	19.853	0	87	22	1.26527909472281	0.0138639038978865	1.26527909472281	510.04764925766	0	5.58868918497404						56	6	2	NaN	NaN	NaN	0.0065863	1	33850	34.33	17.642	1	6059.3			6512	1325	5543	5687	6512	6512		
FSDFLGLYEK	10	Unmodified	_FSDFLGLYEK_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.805697	1217.59684	0.46084	0.00028102	2.3795	0.0014511	2.8404	0.0017321	609.806475970137	14.577	0.10642	14.577	14.542	14.648	0	582	43	0.934820374997243	0.0283515051757137	0.934820374997243	378.669035973478	0	11.4843850438286						223	13	3	NaN	NaN	NaN	0.00058548	1	9953	63.397	54.634	1	50103			6513	1689	5544	5688	6513	6513		
FSDFLLDPYK	10	Unmodified	_FSDFLLDPYK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.813522	1243.61249	0.85079	0.00052988	5.0394	0.0031386	5.8902	0.0036685	622.817292816958	15.189	0.24828	15.189	15.092	15.34	0	573	73	0.940896116921038	0.0486362780919285	0.940896116921038	381.040758199435	0	19.6965466716899						778	29	5	NaN	NaN	NaN	0.0024953	1	10733	76.572	62.577	1	199240			6514	3238	5545	5689	6514	6514		
FSDHVALLSVFQAWDDAR	18	Unmodified	_FSDHVALLSVFQAWDDAR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.009439	2076.00649	-0.96904	-0.00067156	0.32757	0.00022701	-0.64147	-0.00044454	693.343940169198	18.914	0.097585	18.914	18.887	18.984	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	522.379239941156	0	13.5424529373261						307	12	5	NaN	NaN	NaN	2.1128E-09	1	32957	108.91	105.06	1	106020			6515	1575	5546	5690	6515	6515		
FSDIQIR	7	Unmodified	_FSDIQIR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.74016	877.465767	-2.0262	-0.00089102	0.96768	0.00042553	-1.0586	-0.00046549	439.740440534799	7.0303	0.34592	7.0303	6.986	7.3319	0	753	64	0.81889964927511	0.0429097473118319	0.81889964927511	333.149989606408	0	17.4568176743081						444	40	3	NaN	NaN	NaN	0.0091525	1	1974	84.699	23.204	1	113230			6516	656	5547	5691	6516	6516		
FSDQFPLPLK	10	Unmodified	_FSDQFPLPLK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.324057	1190.63356	0.71613	0.00042704	-2.3342	-0.001392	-1.6181	-0.00096493	596.322459022269	14.347	0.31035	14.347	14.178	14.489	0	615	73	0.912521036363781	0.0486767350885208	0.912521036363781	369.730036749351	0	19.7225601777169						903	36	2	NaN	NaN	NaN	2.6194E-10	1	9185	150.53	122.8	1	543960			6517	2448	5548	5692	6517	6517		
FSDSEIGGITIAHVIR	16	Unmodified	_FSDSEIGGITIAHVIR_			0	0	0	P42226	P42226	P42226	STAT6	Signal transducer and activator of transcription 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.959768	1713.90498	1.6729	0.0014353	1.6532	0.0014184	3.3262	0.0028537	857.961564945765	13.221	0.079811	13.221	13.194	13.274	0	183	31	1.20177511391933	0.0198885785601712	1.20177511391933	485.22146575977	0	8.03009242667036						202	10	3	NaN	NaN	NaN	1.4846E-08	1	24888	102.03	99.727	1	46794			6518	1045	5549	5693	6518	6518		
FSDSYASVIK	10	Unmodified	_FSDSYASVIK_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.782222	1115.54989	0.77275	0.0004318	-0.59975	-0.00033513	0.17299	9.6665E-05	558.781635040183	8.6623	0.21303	8.6623	8.5914	8.8044	0	627	46	0.90440375274676	0.0304461528019007	0.90440375274676	366.723505922576	0	12.3455037238151						500	25	5	NaN	NaN	NaN	0.0092271	1	7142	57.032	30.809	1	180690			6519	741	5550	5694	6519	6519		
FSDVLHTIK	9	Unmodified	_FSDVLHTIK_			0	0	0	P19174	P19174	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.295299	1058.57605	0.26432	0.00014017	2.0283	0.0010756	2.2927	0.0012158	530.296555092587	7.5801	0.070918	7.5801	7.5447	7.6156	0	594	19	0.926715457081489	0.0121607464754927	0.926715457081489	376.017316539901	0	4.9342559486787						69	9	2	NaN	NaN	NaN	0.0039296	1	5690	69.716	55.18	1	15305			6520	762	5551	5695	6520	6520		
FSEAEHWLDYFPPLAIQDLK	20	Unmodified	_FSEAEHWLDYFPPLAIQDLK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	807.070476	2418.1896	0.71375	0.00057605	0.38268	0.00030885	1.0964	0.0008849	807.404992630481	19.694	0.062059	19.694	19.676	19.738	0	558	55	0.951016745717027	0.0364468926238521	0.951016745717027	574.616067313885	0	22.0216628147165						323	8	5	NaN	NaN	NaN	0.0013569	1	36436	37.886	35.915	1	67497			6521	3161	5552	5696	6521	6521		
FSEGEATLR	9	Unmodified	_FSEGEATLR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.251089	1008.48762	0.9185	0.00046408	0.68276	0.00034497	1.6013	0.00080904	505.251181291166	5.1504	0.13299	5.1504	5.1149	5.2479	0	696	40	0.857641857947968	0.0264710186728029	0.857641857947968	348.212389910599	0	10.7475359207386						294	16	4	NaN	NaN	NaN	0.00011552	1	4470	91.783	56.851	1	104680			6522	1101	5553	5697	6522	6522		
FSEGNILELLHR	12	Unmodified	_FSEGNILELLHR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.592898	1426.75686	-2.2224	-0.0010592	-0.11956	-5.6979E-05	-2.3419	-0.0011161	476.592895150212	15.207	0.13302	15.207	15.171	15.304	0	792	31	0.792332785124922	0.0204516951022167	0.792332785124922	480.631958668952	0	12.4060728769778						321	16	4	NaN	NaN	NaN	2.4214E-05	1	16289	126.29	69.261	1	144510			6523	2687	5554	5698	6523	6523		
FSEGNILELLHR	12	Unmodified	_FSEGNILELLHR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.385708	1426.75686	1.3976	0.0009984	-3.0586	-0.0021851	-1.6611	-0.0011867	714.884490506015	15.216	0.17733	15.216	15.171	15.349	0	393	40	1.0618830335572	0.0261071745349262	1.0618830335572	429.431002913056	0	10.557876705312						418	21	4	NaN	NaN	NaN	1.0305E-05	1	16290	115.41	57.524	1	92788			6524	2687	5554	5698	6524	6524		
FSELTAEK	8	Unmodified	_FSELTAEK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.737283	923.460012	-0.063682	-2.9468E-05	0.61019	0.00028236	0.54651	0.00025289	462.737654155268	4.645	0.46993	4.645	4.5386	5.0085	0	771	70	0.806643990516186	0.0469637201092631	0.806643990516186	327.912246898697	0	19.0914197152764						1440	54	4	NaN	NaN	NaN	0.0029694	1	2760	93.561	65.856	1	751090			6525	1113	5555	5699	6525	6525		
FSFCCSPEPEAEAEAAAGPGPCER	24	Unmodified	_FSFCCSPEPEAEAEAAAGPGPCER_			0	0	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	876.026284	2625.05702	1.9902	0.0017435	0.94423	0.00082717	2.9344	0.0025707	876.362216253659	11.669	0.088665	11.669	11.624	11.713	0	351	37	1.08996939197032	0.024044179420704	1.08996939197032	658.27644520425	0	14.5212490126009						296	11	5	NaN	NaN	NaN	0.00014093	1	37339	78.673	77.247	1	56367			6526	1673	5556	5700	6526	6526		
FSFDLGK	7	Unmodified	_FSFDLGK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	407.210704	812.406855	-2.0188	-0.00082207	-0.79422	-0.00032342	-2.813	-0.0011455	407.210214444715	11.146	0.17734	11.146	11.092	11.27	0	825	31	0.769815552739974	0.0204887515295875	0.769815552739974	313.567195513965	0	8.34563595636433						267	21	3	NaN	NaN	NaN	0.018744	1	1117	56.091	11.671	1	74899			6527	1530	5557	5701	6527	6527		
FSFSGNTLVSSSADPEGHFETPIWIER	27	Unmodified	_FSFSGNTLVSSSADPEGHFETPIWIER_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1004.14543	3009.41447	0.62117	0.00062374	0.037844	3.8001E-05	0.65901	0.00066174	1004.47985734291	17.016	0.133	17.016	16.972	17.105	0	414	61	1.04781950764076	0.0401953809989963	1.04781950764076	632.394505750271	0	24.2592716731697						851	16	6	NaN	NaN	NaN	2.6619E-05	1	38240	39.557	36.789	1	227340			6528	1771	5558	5702	6528	6528		
FSFSPEPTLEDIR	13	Unmodified	_FSFSPEPTLEDIR_			0	0	0	Q9H773	Q9H773	Q9H773	DCTPP1	dCTP pyrophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.380288	1536.74602	1.6501	0.0012696	-1.9262	-0.001482	-0.27603	-0.00021237	769.378557346026	14.551	0.2128	14.551	14.489	14.701	0	441	31	1.02971785871157	0.0201226639147589	1.02971785871157	416.136946156005	0	8.13211486929936						436	25	3	NaN	NaN	NaN	2.0585E-05	1	19629	110.52	85.701	1	94532			6529	2912	5559	5703	6529	6529		
FSFTLPYPVK	10	Unmodified	_FSFTLPYPVK_			0	0	0	Q9P035	Q9P035	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.828975	1197.6434	-0.086816	-5.2074E-05	-1.2709	-0.00076231	-1.3577	-0.00081438	599.828069948294	15.845	0.21285	15.845	15.748	15.961	0	615	61	0.912521036363781	0.0405526946120233	0.912521036363781	369.705241420341	0	16.429806168114						673	25	2	NaN	NaN	NaN	0.047025	1	9398	48.157	26.883	1	256950			6530	3143	5560	5704	6530	6530		
FSGDLDDQTCR	11	Unmodified	_FSGDLDDQTCR_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.274966	1312.53538	2.4449	0.001607	0.15363	0.00010098	2.5985	0.0017079	657.275311118235	5.044	0.18619	5.044	4.9997	5.1859	0	570	58	0.942920803299286	0.0384584049101124	0.942920803299286	381.640484245962	0	15.5657656739216						696	22	5	NaN	NaN	NaN	4.7757E-08	1	12720	147.78	131.9	1	232420			6531	533	5561	5705	6531	6531		
FSGDLDDQTCREDLHILFSNHGEIK	25	Unmodified	_FSGDLDDQTCREDLHILFSNHGEIK_			0	0	1	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	737.347623	2945.36138	0.95162	0.00070167	0.15009	0.00011067	1.1017	0.00081234	737.598612268944	12.644	0.17737	12.644	12.609	12.786	-1.7764E-15	534	28	0.967195187796614	0.0181919339867516	0.967195187796614	778.389975962034	0	14.6407046243784						470	21	6	NaN	NaN	NaN	0.0001934	1	38141	64.401	63.945	1	176230			6532	533	5562	5706	6532	6532		
FSGEELDK	8	Unmodified	_FSGEELDK_			0	0	0	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.71909	923.423627	-0.2721	-0.00012591	1.2685	0.00058694	0.99635	0.00046103	462.719721639865	4.379	0.15962	4.379	4.3347	4.4943	0	771	37	0.806643990516186	0.0245215525463975	0.806643990516186	327.91243311851	0	9.96836529357523						258	19	3	NaN	NaN	NaN	0.051106	1	2754	31.952	21.873	1	83564			6533	912	5563	5707	6533	6533		
FSGWYDADLSPAGHEEAK	18	Unmodified	_FSGWYDADLSPAGHEEAK_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.442137	1978.86972	2.5368	0.0025125	-0.081653	-8.0872E-05	2.4551	0.0024317	990.943631475399	10.534	0.15078	10.534	10.48	10.631	0	216	55	1.17988115188462	0.0358535635982185	1.17988115188462	475.869635204663	0	14.4604583292299						744	18	5	NaN	NaN	NaN	4.1125E-10	1	31261	107.6	97.581	1	219980			6534	757	5564	5708	6534	6534		
FSGWYDADLSPAGHEEAK	18	Unmodified	_FSGWYDADLSPAGHEEAK_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.630517	1978.86972	1.8357	0.0012127	1.0274	0.0006787	2.863	0.0018914	660.965680539232	10.543	0.32811	10.543	10.454	10.782	0	522	106	0.975277694896658	0.0706682558116378	0.975277694896658	590.021366073885	0	42.7527267876864						2341	38	6	NaN	NaN	NaN	5.0601E-11	1	31262	224.75	219.66	1	2069900			6535	757	5564	5708	6535	6535		
FSHEEIAMATVTALR	15	Unmodified	_FSHEEIAMATVTALR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.287257	1674.83994	0.095718	5.3534E-05	0.74315	0.00041564	0.83887	0.00046917	559.288134023955	11.802	0.33697	11.802	11.74	12.077	0	636	67	0.898312834727904	0.0446822477654109	0.898312834727904	544.145159009016	0	27.0658815896294						747	39	4	NaN	NaN	NaN	5.5995E-12	1	23766	187.33	179.33	1	262220			6536	504	5565	5709	6536	6536		
FSHEEIAMATVTALR	15	Unmodified	_FSHEEIAMATVTALR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.427247	1674.83994	2.3068	0.0019341	-1.1925	-0.00099982	1.1143	0.00093428	838.927922828063	11.775	0.32809	11.775	11.669	11.997	0	327	67	1.10599442759226	0.0440506641076943	1.10599442759226	446.633190779306	0	17.7889582221478						1323	38	6	NaN	NaN	NaN	0.046696	1	23767	46.358	33.776	1	605260			6537	504	5565	5709	6537	6537		
FSHEEIAMATVTALR	15	Unmodified	_FSHEEIAMATVTALR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.427247	1674.83994	1.9035	0.0015959	0.73602	0.0006171	2.6395	0.002213	838.428092863991	11.784	0.36359	11.784	11.731	12.094	0	219	67	1.17788915118882	0.0438511426752775	1.17788915118882	475.666394440786	0	17.7083852987403						1097	42	5	NaN	NaN	NaN	1.2005E-08	1	23768	165.09	151.3	1	585600			6538	504	5565	5709	6538	6538		
FSHEEIAMATVTALR	15	Oxidation (M)	_FSHEEIAM(Oxidation (M))ATVTALR_	FSHEEIAM(1)ATVTALR	FSHEEIAM(95)ATVTALR	0	1	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.618895	1690.83486	0.66543	0.00037571	-0.8975	-0.00050675	-0.23207	-0.00013103	564.618273594024	9.7268	0.16847	9.7268	9.6824	9.8509	0	672	28	0.873923798053065	0.0183082845696197	0.873923798053065	529.330673955469	0	11.0892238336972						317	20	4	NaN	NaN	NaN	0.00075339	1	24230	94.791	90.809	1	102410			6539	504	5565	5710	6539	6539	83	
FSHEEIAMATVTALR	15	Oxidation (M)	_FSHEEIAM(Oxidation (M))ATVTALR_	FSHEEIAM(1)ATVTALR	FSHEEIAM(53)ATVTALR	0	1	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.424704	1690.83486	2.6242	0.0022212	-1.9896	-0.001684	0.63461	0.00053715	846.422676583575	9.6292	0.19507	9.6292	9.5317	9.7268	0	339	43	1.09798411722691	0.0280360922618905	1.09798411722691	443.363973186259	0	11.3209226461692						218	23	2	NaN	NaN	NaN	0.051673	1	24231	53.051	40.368	1	125050			6540	504	5565	5710	6540	6540	83	
FSHQGVQLIDFSPCER	16	Unmodified	_FSHQGVQLIDFSPCER_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.64047	1918.89958	-0.47542	-0.00030457	-0.61703	-0.00039529	-1.0925	-0.00069987	640.974538978109	11.695	0.16845	11.695	11.624	11.793	0	705	52	0.851531465363931	0.0346448160235548	0.851531465363931	515.269657783003	0	20.9639023600646						682	20	5	NaN	NaN	NaN	6.9264E-07	1	30028	137.39	119.98	1	280970			6541	1280	5566	5711	6541	6541		
FSHQGVQLIDFSPCER	16	Unmodified	_FSHQGVQLIDFSPCER_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.64047	1918.89958	-0.12452	-7.9772E-05	0.47231	0.00030258	0.34779	0.00022281	640.975050036523	11.695	0.10641	11.695	11.633	11.74	0	651	43	0.888155670855968	0.0284578263810398	0.888155670855968	537.431303026967	0	17.2200968987087						421	13	5	NaN	NaN	NaN	0.0027912	1	30029	66.485	61.669	1	134070			6542	1280	5566	5711	6542	6542		
FSIQTMCPIEGEGNIAR	17	Unmodified	_FSIQTMCPIEGEGNIAR_			0	0	0	Q13155	Q13155	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.958585	1921.90262	1.825	0.0017556	1.7699	0.0017025	3.5949	0.0034581	961.960915905451	13.167	0.23055	13.167	13.123	13.354	0	198	109	1.1918274123006	0.0717762081296904	1.1918274123006	480.787022220058	0	28.9547538651655						973	27	4	NaN	NaN	NaN	3.7709E-10	1	30102	132.93	115.52	1	226910			6543	1636	5567	5712	6543	6543		
FSLDAVSLK	9	Unmodified	_FSLDAVSLK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.276575	978.538597	-0.48726	-0.00023889	-2.8319	-0.0013884	-3.3191	-0.0016273	490.275563239711	12.431	0.20394	12.431	12.378	12.582	0	714	52	0.845418525735192	0.0346303797525405	0.845418525735192	343.390963348055	0	14.0661212196557						431	24	3	NaN	NaN	NaN	0.034151	1	3813	40.502	15.651	1	107410			6544	3465	5568	5713	6544	6544		
FSLDCPSCDMMELR	14	Unmodified	_FSLDCPSCDMMELR_			0	0	0	Q8IX12	Q8IX12	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.859168	1759.70378	1.9061	0.001679	0.16097	0.0001418	2.0671	0.0018208	880.859853253451	14.684	0.079791	14.684	14.648	14.728	0	288	34	1.13199748998575	0.0219844292788041	1.13199748998575	456.953038823774	0	8.87444703245956						269	10	5	NaN	NaN	NaN	1.5216E-05	1	26123	97.594	91.896	1	66760			6545	2210	5569	5714	6545	6545		
FSLENNFLLQHNIR	14	Unmodified	_FSLENNFLLQHNIR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.309161	1743.90565	-0.5759	-0.00033535	-0.67766	-0.00039461	-1.2536	-0.00072996	582.308889736302	13.744	0.10642	13.744	13.708	13.815	0	675	28	0.871889544407995	0.0183108263146563	0.871889544407995	527.968014731478	0	11.0880221920841						216	13	4	NaN	NaN	NaN	0.00012795	1	25723	85.821	79.074	1	53807			6546	1044	5570	5715	6546	6546		
FSLFAGGMLR	10	Unmodified	_FSLFAGGMLR_			0	0	0	Q9BVK6	Q9BVK6	Q9BVK6	TMED9	Transmembrane emp24 domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.791869	1097.56919	-0.24734	-0.00013598	-1.0272	-0.00056476	-1.2746	-0.00070074	549.791159531306	15.624	0.20392	15.624	15.562	15.766	0	648	46	0.890187667287968	0.0304672723906905	0.890187667287968	361.03123851576	0	12.3565372669331						389	24	3	NaN	NaN	NaN	0.00051404	1	6648	101.41	69.46	1	153380			6547	2766	5571	5716	6547	6547		
FSLLSQHDISFYEALESDPLHK	22	Unmodified	_FSLLSQHDISFYEALESDPLHK_			0	0	0	Q6L8Q7	Q6L8Q7	Q6L8Q7	PDE12	2,5-phosphodiesterase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	644.822144	2575.25947	-0.62553	-0.00040335	-0.078945	-5.0906E-05	-0.70447	-0.00045426	645.072680186717	16.768	0.062047	16.768	16.732	16.794	0	576	16	0.938871150116794	0.0101248343125415	0.938871150116794	756.104919461151	0	8.15387397034112						89	8	3	NaN	NaN	NaN	0.072146	1	37139	8.4123	8.0479	1	17625			6548	2043	5572	5717	6548	6548		
FSLPVSLSEFR	11	Unmodified	_FSLPVSLSEFR_			0	0	0	Q12980	Q12980	Q12980	NPRL3	Nitrogen permease regulator 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.34552	1280.67649	-0.43347	-0.000278	-1.6711	-0.0010718	-2.1046	-0.0013498	641.343872102668	16.98	0.18626	16.98	16.839	17.025	0	561	31	0.948993180460448	0.0202370558589571	0.948993180460448	384.197759799612	0	8.19292665746917						263	22	3	NaN	NaN	NaN	0.019314	1	11781	40.386	22.05	1	57150			6549	1614	5573	5718	6549	6549		
FSLSCSETLMGELGNIAK	18	Unmodified	_FSLSCSETLMGELGNIAK_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.973901	1955.93325	0.99032	0.0009695	3.5372	0.0034628	4.5275	0.0044323	979.980514613437	18.257	0.133	18.257	18.213	18.346	0	228	49	1.17191150690002	0.0318873497826937	1.17191150690002	472.693909961259	0	12.861855147199						424	16	4	NaN	NaN	NaN	0.011054	1	30816	61.067	58.351	1	126940			6550	3353	5574	5719	6550	6550		
FSLVPHNYGLVLYENK	16	Unmodified	_FSLVPHNYGLVLYENK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.668355	1891.98323	-0.1227	-7.7505E-05	-1.7573	-0.00111	-1.88	-0.0011875	632.001695202215	14.294	0.13299	14.294	14.223	14.356	0	720	70	0.841341816837976	0.0468658998866454	0.841341816837976	509.155750816789	0	28.3618880779876						765	16	4	NaN	NaN	NaN	1.4233E-07	1	29421	124.24	109.26	1	196370			6551	2633	5575	5720	6551	6551		
FSLVPHNYGLVLYENK	16	Unmodified	_FSLVPHNYGLVLYENK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.998894	1891.98323	2.1686	0.0020537	-1.0003	-0.0009473	1.1683	0.0011064	946.998386342458	14.294	0.12411	14.294	14.232	14.356	0	216	61	1.17988115188462	0.0398482429728073	1.17988115188462	476.021822522614	0	16.076732147082						580	15	4	NaN	NaN	NaN	0.0001613	1	29422	50.314	47.42	1	152100			6552	2633	5575	5720	6552	6552		
FSLYFLAYEDK	11	Unmodified	_FSLYFLAYEDK_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.345186	1394.67582	0.27849	0.00019448	0.70305	0.00049097	0.98154	0.00068546	698.345181564245	17.22	0.16849	17.22	17.167	17.335	0	456	46	1.01965166402748	0.030215279505817	1.01965166402748	412.443459363282	0	12.2219134677662						491	20	4	NaN	NaN	NaN	0.00049419	1	15283	70.389	63.642	1	115360			6553	1545	5576	5721	6553	6553		
FSMGFIDSIIAK	12	Unmodified	_FSMGFIDSIIAK_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.849581	1327.68461	0.21724	0.00014444	-0.58232	-0.00038716	-0.36508	-0.00024272	664.849653353963	18.435	0.088664	18.435	18.39	18.479	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	397.141811170387	0	6.53737414626943						154	11	4	NaN	NaN	NaN	0.030435	1	13220	41.824	37.621	1	34088			6554	876	5577	5722	6554	6554		
FSMGSVVAGLLK	12	Unmodified	_FSMGSVVAGLLK_			0	0	0	Q9H845	Q9H845	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.839017	1207.66348	-0.31378	-0.00018979	0.31494	0.00019049	0.0011632	7.0354E-07	604.839383483408	17.974	0.11526	17.974	17.938	18.053	0	573	52	0.940896116921038	0.0344244475580081	0.940896116921038	381.165288647269	0	13.9456463407556						275	14	3	NaN	NaN	NaN	0.0030574	1	9683	65.933	53.866	1	67948			6555	2922	5578	5723	6555	6555		
FSMPGFK	7	Unmodified	_FSMPGFK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	407.201825	812.389096	-1.2134	-0.00049409	-1.5134	-0.00061627	-2.7268	-0.0011104	407.201551868101	10.729	0.27486	10.729	10.613	10.888	0	867	52	0.741107305531458	0.0348770294293289	0.741107305531458	301.873644373657	0	14.2063853644092						812	32	4	NaN	NaN	NaN	0.022192	1	1114	61.494	30.436	1	644300			6556	1584	5579	5724	6556	6556		
FSNTGEDWYVLVGVAK	16	Unmodified	_FSNTGEDWYVLVGVAK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.946327	1783.8781	1.5256	0.0013623	-2.089	-0.0018654	-0.56341	-0.0005031	893.446101311658	16.475	0.1596	16.475	16.386	16.546	0	303	49	1.12200181823275	0.0319927619161406	1.12200181823275	452.870114084218	0	12.9131392689298						477	19	4	NaN	NaN	NaN	2.2814E-07	1	26795	117.41	112.59	1	161600			6557	1841	5580	5725	6557	6557		
FSPAGPILSIR	11	Unmodified	_FSPAGPILSIR_			0	0	0	P11940;Q9H361;Q4VXU2	P11940	P11940	PABPC1;PABPC3;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.337498	1156.66044	1.3603	0.00078808	-1.8736	-0.0010855	-0.51333	-0.00029739	579.336526211047	12.83	0.25726	12.83	12.733	12.99	0	603	70	0.920633820089869	0.0466194521646726	0.920633820089869	373.142604874607	0	18.8953560459629						1055	30	4	NaN	NaN	NaN	0.051448	1	8256	29.317	21.135	1	504030			6558	661	5581	5726	6558	6558		
FSPAGPVLSIR	11	Unmodified	_FSPAGPVLSIR_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.329673	1142.64479	0.65792	0.00037655	-2.0896	-0.001196	-1.4317	-0.00081941	572.329399110386	11.456	0.09756	11.456	11.412	11.509	0	609	46	0.916577990479294	0.0304208382695857	0.916577990479294	371.552421506897	0	12.3316687076718						343	12	4	NaN	NaN	NaN	0.0077712	1	7865	50.297	34.715	1	92180			6559	1653	5582	5727	6559	6559		
FSPDGELYASGSEDGTLR	18	Unmodified	_FSPDGELYASGSEDGTLR_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.931602	1899.84865	2.7366	0.0026023	-1.1301	-0.0010747	1.6065	0.0015277	951.432248949059	10.347	0.23056	10.347	10.303	10.534	0	291	58	1.12999890578964	0.0379678915865906	1.12999890578964	455.883142398291	0	15.3176446791664						871	27	5	NaN	NaN	NaN	1.4732E-05	1	29593	93.649	88.034	1	201560			6560	3394	5583	5728	6560	6560		
FSPFPVQDRPESSLVFK	17	Unmodified	_FSPFPVQDRPESSLVFK_			0	0	1	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.679031	1979.01526	0.70043	0.00046276	-1.1258	-0.00074379	-0.42537	-0.00028103	661.012678856903	13.531	0.12413	13.531	13.487	13.611	0	663	76	0.880024865079826	0.0508069975986111	0.880024865079826	532.395253040425	0	30.7370909801317						675	15	4	NaN	NaN	NaN	0.0029181	1	31273	66.485	63.401	1	272170			6561	3318	5584	5729	6561	6561		
FSPIPFPPLSYK	12	Unmodified	_FSPIPFPPLSYK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.881739	1391.74892	-0.063518	-4.4265E-05	-1.6885	-0.0011767	-1.7521	-0.001221	696.88146395346	16.936	0.39019	16.936	16.83	17.22	0	504	73	0.987393073566096	0.0484213568908096	0.987393073566096	399.403293016604	0	19.586575916189						1153	45	4	NaN	NaN	NaN	0.00066453	1	15206	70.389	34.178	1	277170			6562	2064	5585	5730	6562	6562		
FSPLTTNLINLLAENGR	17	Unmodified	_FSPLTTNLINLLAENGR_			0	0	0	P48047	P48047	P48047	ATP5O	ATP synthase subunit O, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.012532	1872.01051	1.3302	0.0012464	-0.42585	-0.00039903	0.90432	0.00084736	937.513106285723	19.667	0.1153	19.667	19.605	19.72	0	234	43	1.16792504164217	0.0279129335847876	1.16792504164217	471.234735901998	0	11.2623185710469						413	14	4	NaN	NaN	NaN	5.592E-07	1	28991	84.102	75.728	1	131770			6563	1104	5586	5731	6563	6563		
FSPNSSNPIIVSCGWDK	17	Unmodified	_FSPNSSNPIIVSCGWDK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.45145	1906.88835	2.1423	0.0020447	0.55736	0.00053197	2.6997	0.0025767	954.953636858745	12.564	0.17732	12.564	12.502	12.68	0	249	100	1.15795408347545	0.065808406569456	1.15795408347545	467.148780106125	0	26.5488220028383						1593	21	5	NaN	NaN	NaN	3.7973E-10	1	29739	146.34	123.38	1	932100			6564	1435	5587	5732	6564	6564		
FSPNTSQFLLVSSWDTSVR	19	Unmodified	_FSPNTSQFLLVSSWDTSVR_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.04202	2170.06948	0.92084	0.0010001	1.3201	0.0014337	2.2409	0.0024337	1086.54485839981	17.734	0.16847	17.734	17.681	17.849	0	114	49	1.24744674793813	0.0317345551561103	1.24744674793813	502.811302255161	0	12.7913219789991						647	20	5	NaN	NaN	NaN	0.0016922	1	34313	61.503	58.788	1	150130			6565	220	5588	5733	6565	6565		
FSQEVQITEAR	11	Unmodified	_FSQEVQITEAR_			0	0	0	P31350	P31350	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.333141	1306.65173	1.4742	0.00096462	-3.0659	-0.0020061	-1.5917	-0.0010415	654.331260015388	6.9328	0.14185	6.9328	6.8796	7.0214	0	558	34	0.951016745717027	0.0222561395374655	0.951016745717027	384.935326415633	0	9.00843689260898						323	17	4	NaN	NaN	NaN	0.00092013	1	12557	68.49	54.035	1	93919			6566	923	5589	5734	6566	6566		
FSQFLETEYK	10	Unmodified	_FSQFLETEYK_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.313886	1290.61322	1.7284	0.0011171	2.2309	0.0014418	3.9593	0.0025589	646.314601806307	10.108	0.17734	10.108	10.064	10.241	0	522	43	0.975277694896658	0.028292695105214	0.975277694896658	394.806533228547	0	11.4532926659062						260	21	2	NaN	NaN	NaN	0.00060673	1	12086	83.358	70.084	1	110360			6567	545	5590	5735	6567	6567		
FSQLAEAYEVLSDEVK	16	Unmodified	_FSQLAEAYEVLSDEVK_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.454182	1826.89381	1.8179	0.0016624	0.89009	0.00081394	2.708	0.0024764	914.956436322494	17.743	0.19506	17.743	17.69	17.885	0	264	55	1.14797626962532	0.0359423767491323	1.14797626962532	463.269930194346	0	14.5046747116331						618	23	5	NaN	NaN	NaN	1.1676E-08	1	27894	144.09	135.72	1	215940			6568	2520	5591	5736	6568	6568		
FSQMLHPIFEEASDVIK	17	Unmodified	_FSQMLHPIFEEASDVIK_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.336276	1989.987	0.17717	0.0001177	-1.1574	-0.00076892	-0.98026	-0.00065122	664.335709877068	15.783	0.20398	15.783	15.721	15.925	1.7764E-15	639	58	0.896281965493857	0.0385758304413828	0.896281965493857	542.209632146896	0	23.3366146353935						798	24	6	NaN	NaN	NaN	1.1494E-06	1	31456	121.86	106.25	1	345090			6569	2719	5592	5737	6569	6569		
FSQMLHPIFEEASDVIK	17	Oxidation (M)	_FSQM(Oxidation (M))LHPIFEEASDVIK_	FSQM(1)LHPIFEEASDVIK	FSQM(53)LHPIFEEASDVIK	0	1	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.667914	2005.98191	0.56268	0.00037681	0.37633	0.00025202	0.93901	0.00062882	670.003779381203	13.859	0.20393	13.859	13.815	14.019	0	633	64	0.900343422309015	0.0426719476596595	0.900343422309015	544.636567705593	0	25.8131536642614						438	24	4	NaN	NaN	NaN	0.0013814	1	31735	53.363	42.605	1	108830			6570	2719	5592	5738	6570	6570	623	
FSSELEQIELHNSIR	15	Unmodified	_FSSELEQIELHNSIR_			0	0	0	Q96EY4	Q96EY4	Q96EY4	TMA16	Translation machinery-associated protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.307485	1800.90063	0.56755	0.00034127	0.60077	0.00036125	1.1683	0.00070252	601.307758417386	11.048	0.12416	11.048	11.004	11.128	0	639	34	0.896281965493857	0.0223426636256	0.896281965493857	542.603371767544	0	13.5261057170092						203	15	2	NaN	NaN	NaN	2.6743E-05	1	27239	117.21	89.619	1	121970			6571	2521	5593	5739	6571	6571		
FSSELEQIELHNSIR	15	Unmodified	_FSSELEQIELHNSIR_			0	0	0	Q96EY4	Q96EY4	Q96EY4	TMA16	Translation machinery-associated protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.45759	1800.90063	1.9241	0.0017345	-0.38455	-0.00034666	1.5395	0.0013878	901.457023637218	11.048	0.053197	11.048	11.021	11.075	0	201	19	1.18983705239708	0.0119429798452311	1.18983705239708	480.215218006736	0	4.82015638903948						103	7	3	NaN	NaN	NaN	2.481E-12	1	27240	142.51	122.95	1	19215			6572	2521	5593	5739	6572	6572		
FSSETWQNLGTLHR	14	Unmodified	_FSSETWQNLGTLHR_			0	0	0	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.277749	1674.81142	-0.2885	-0.00016135	-0.37156	-0.0002078	-0.66005	-0.00036915	559.277692946952	10.498	0.14193	10.498	10.454	10.596	0	738	34	0.829104889055312	0.0224421675628655	0.829104889055312	502.223124675351	0	13.5941491440876						399	17	5	NaN	NaN	NaN	6.1743E-05	1	23759	99.276	93.248	1	193720			6573	2560	5594	5740	6573	6573		
FSSSGDFLVAGVGQEHR	17	Unmodified	_FSSSGDFLVAGVGQEHR_			0	0	0	O43818	O43818	O43818	RRP9	U3 small nucleolar RNA-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.934282	1791.85401	1.2646	0.0011342	0.75153	0.00067407	2.0161	0.0018083	896.935356294924	10.285	0.044321	10.285	10.259	10.303	0	171	19	1.20972836110953	0.0119265972436806	1.20972836110953	488.262131484084	0	4.8137300726014						51	6	2	NaN	NaN	NaN	1.354E-06	1	27011	106.47	99.719	1	8719.4			6574	235	5595	5741	6574	6574		
FSSSGDFLVAGVGQEHR	17	Unmodified	_FSSSGDFLVAGVGQEHR_			0	0	0	O43818	O43818	O43818	RRP9	U3 small nucleolar RNA-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.291947	1791.85401	0.48089	0.00028771	2.1818	0.0013053	2.6627	0.0015931	598.293187170454	10.277	0.133	10.277	10.241	10.374	0	594	31	0.926715457081489	0.0202707209833614	0.926715457081489	561.049226052253	0	12.2722376456876						321	16	4	NaN	NaN	NaN	0.00085143	1	27012	62.398	60.414	1	93064			6575	235	5595	5741	6575	6575		
FSSWEDFEEEHGK	13	Unmodified	_FSSWEDFEEEHGK_			0	0	0	O14646	O14646	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.895082	1625.66342	-1.8444	-0.0010013	0.98036	0.00053223	-0.86403	-0.00046908	542.895569017008	9.3011	0.088725	9.3011	9.2656	9.3544	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	487.500475610038	0	9.90630955642945						175	11	3	NaN	NaN	NaN	0.00017944	1	22345	60	45.545	1	47087			6576	110	5596	5742	6576	6576		
FSTELER	7	Unmodified	_FSTELER_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.2218	880.429047	-2.4853	-0.0010966	5.8857	0.0025969	3.4004	0.0015003	441.224677685145	5.3012	0.17737	5.3012	5.1947	5.3721	0	786	28	0.796423123669906	0.0184103687161689	0.796423123669906	323.989127758292	0	7.48943510652293						150	21	2	NaN	NaN	NaN	0.054847	1	2008	29.102	21.751	1	47066			6577	3209	5597	5743	6577	6577		
FSTETTFLVDK	11	Unmodified	_FSTETTFLVDK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.326993	1286.63943	1.6514	0.001064	0.57375	0.00036968	2.2252	0.0014337	644.327256552284	10.977	0.19509	10.977	10.906	11.101	0	546	40	0.959108205975751	0.0262845144362098	0.959108205975751	388.273594799246	0	10.6407002297694						390	23	2	NaN	NaN	NaN	0.00073231	1	11959	74.424	52.38	1	187630			6578	1107	5598	5744	6578	6578		
FSTFFDDAPVFR	12	Unmodified	_FSTFFDDAPVFR_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.845884	1447.67722	0.23923	0.00017341	-0.23091	-0.00016738	0.0083172	6.0287E-06	724.845511912327	16.67	0.16848	16.67	16.581	16.75	0	519	31	0.97729762293174	0.0201950922586444	0.97729762293174	395.169372399786	0	8.16586651409636						359	20	4	NaN	NaN	NaN	3.6019E-07	1	16909	129.28	124.13	1	115670			6579	248	5599	5745	6579	6579		
FSTIASSYEECR	12	Unmodified	_FSTIASSYEECR_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.319373	1448.62419	1.4037	0.0010181	5.5761	0.0040444	6.9798	0.0050626	725.827258100414	7.5181	0.14187	7.5181	7.4826	7.6245	0	456	40	1.01965166402748	0.0261829569110703	1.01965166402748	412.292615140496	0	10.5869878487102						287	17	4	NaN	NaN	NaN	4.4136E-05	1	16929	94.66	91.315	1	104440			6580	3109	5600	5746	6580	6580		
FSTVAGESGSADTVR	15	Unmodified	_FSTVAGESGSADTVR_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.354802	1482.69505	1.3243	0.00098312	0.42124	0.00031271	1.7456	0.0012958	742.354958135219	5.4519	0.14188	5.4519	5.3898	5.5317	0	486	46	0.999498404980629	0.0302445172563094	0.999498404980629	404.055873839475	0	12.2266076543544						412	17	4	NaN	NaN	NaN	4.0214E-06	1	17988	104.04	87.05	1	115790			6581	501	5601	5747	6581	6581		
FSVCVLGDQQHCDEAK	16	Unmodified	_FSVCVLGDQQHCDEAK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.916917	1891.81928	2.449	0.002319	-1.8642	-0.0017652	0.58488	0.00055383	946.915585454772	8.4318	0.1419	8.4318	8.3874	8.5293	0	180	55	1.203763835057	0.0358043651273887	1.203763835057	485.657575643542	0	14.445243044206						688	17	5	NaN	NaN	NaN	1.1482E-08	1	29407	126.32	118.77	1	199650			6582	1413	5602	5748	6582	6582		
FSVCVLGDQQHCDEAK	16	Unmodified	_FSVCVLGDQQHCDEAK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.613704	1891.81928	1.5965	0.0010084	0.88882	0.00056139	2.4853	0.0015698	631.61469417499	8.4318	0.33706	8.4318	8.3785	8.7156	0	609	61	0.916577990479294	0.0405526946120233	0.916577990479294	554.686847491955	0	24.5413337056945						1340	39	6	NaN	NaN	NaN	9.4752E-18	1	29408	236.7	220.82	1	1563300			6583	1413	5602	5748	6583	6583		
FSVGGMTDVAEIK	13	Unmodified	_FSVGGMTDVAEIK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.339578	1352.6646	1.0887	0.00073744	-2.723	-0.0018444	-1.6343	-0.001107	677.338020807471	12.529	0.17734	12.529	12.485	12.662	0	480	31	1.00353128488872	0.0201616152840689	1.00353128488872	406.046611225601	0	8.15774822988033						449	21	5	NaN	NaN	NaN	0.019529	1	13960	44.598	36.124	1	177930			6584	990	5603	5749	6584	6584		
FSVLLLHGIR	10	Unmodified	_FSVLLLHGIR_			0	0	0	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	385.572998	1153.69716	-1.3327	-0.00051384	-0.91677	-0.00035348	-2.2494	-0.00086732	385.572582886276	12.946	0.12414	12.946	12.901	13.026	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	469.276300208813	0	9.96259101173109						191	15	3	NaN	NaN	NaN	0.020802	1	8175	42.835	40.467	1	56219			6585	2560	5604	5750	6585	6585		
FSVLLLHGIR	10	Unmodified	_FSVLLLHGIR_			0	0	0	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.855858	1153.69716	1.5226	0.00087984	-0.5691	-0.00032886	0.95349	0.00055098	577.855478009555	12.937	0.14186	12.937	12.901	13.043	0	525	34	0.973257487423603	0.0222253598495629	0.973257487423603	394.483464633306	0	9.00844542114635						301	17	3	NaN	NaN	NaN	4.2194E-08	1	8176	154.71	149.8	1	117410			6586	2560	5604	5750	6586	6586		
FSVPGFK	7	Unmodified	_FSVPGFK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	391.215789	780.417025	-1.9517	-0.00076353	-0.84019	-0.0003287	-2.7919	-0.0010922	391.215528177849	10.676	0.11527	10.676	10.631	10.746	0	888	16	0.726732155490709	0.0102722617102058	0.726732155490709	296.219292290071	0	4.18702003348261						73	14	2	NaN	NaN	NaN	0.0685	1	830	44.42	31.867	1	12100			6587	1584	5605	5751	6587	6587		
FSVSPVVR	8	Unmodified	_FSVSPVVR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.758352	889.502152	-0.9947	-0.0004434	-0.55248	-0.00024627	-1.5472	-0.00068967	445.758068043246	7.8285	0.22169	7.8285	7.7664	7.9881	0	798	58	0.788241307691771	0.038860937412605	0.788241307691771	320.610544466852	0	15.8063605405713						664	26	4	NaN	NaN	NaN	3.3792E-05	1	2157	121.52	110.69	1	391690			6588	679	5606	5752	6588	6588		
FSVTHHYLVQESTDK	15	Unmodified	_FSVTHHYLVQESTDK_			0	0	0	Q15042	Q15042	Q15042	RAB3GAP1	Rab3 GTPase-activating protein catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.628448	1789.86351	-0.10966	-6.5536E-05	1.0596	0.00063328	0.94999	0.00056774	597.628912632473	5.7357	0.062066	5.7357	5.7091	5.7711	0	729	22	0.835224628594324	0.0142754238517586	0.835224628594324	505.663447605223	0	8.64265706945798						121	8	3	NaN	NaN	NaN	0.00014999	1	26960	51.569	43.194	1	27633			6589	1799	5607	5753	6589	6589		
FSWAQGTDTILADEMGLGK	19	Unmodified	_FSWAQGTDTILADEMGLGK_			0	0	0	Q14839;Q8TDI0;Q12873	Q14839	Q14839	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.49077	2038.96699	0.62159	0.00063433	-0.74655	-0.00076184	-0.12495	-0.00012751	1020.48990697976	18.302	0.088686	18.302	18.257	18.346	0	141	34	1.2295923935727	0.0218369546358563	1.2295923935727	495.817350351065	0	8.80547167002828						134	11	2	NaN	NaN	NaN	0.055372	1	32326	25.922	23.207	1	33978			6590	1776	5608	5754	6590	6590		
FSYLAVIEGAK	11	Unmodified	_FSYLAVIEGAK_			0	0	0	P18031	P18031	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.329339	1196.64412	-0.011709	-7.0176E-06	-2.1814	-0.0013073	-2.1931	-0.0013144	599.327395163903	14.701	0.15073	14.701	14.648	14.799	0	594	67	0.926715457081489	0.0445523806599541	0.926715457081489	375.459644634084	0	18.0504391961576						335	18	2	NaN	NaN	NaN	0.021894	1	9359	32.549	26.683	1	97925			6591	748	5609	5755	6591	6591		
FTAGDFSTTVIQNVNK	16	Unmodified	_FTAGDFSTTVIQNVNK_			0	0	0	Q9Y5K8	Q9Y5K8	Q9Y5K8	ATP6V1D	V-type proton ATPase subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.441409	1740.86826	1.9486	0.001698	-1.7278	-0.0015057	0.22077	0.00019239	871.438855850797	13.238	0.10633	13.238	13.203	13.309	0	318	43	1.11199926528787	0.0280245115446394	1.11199926528787	448.918332801313	0	11.3136018996683						256	13	3	NaN	NaN	NaN	0.0050487	1	25630	66.953	65.901	1	72207			6592	3436	5610	5756	6592	6592		
FTAQGLPDLNHSQVYAVK	18	Unmodified	_FTAQGLPDLNHSQVYAVK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.346052	1987.01633	0.8632	0.0005726	-1.224	-0.00081196	-0.36084	-0.00023936	663.345907128322	11.137	0.097532	11.137	11.083	11.181	0	594	55	0.926715457081489	0.0364721440966675	0.926715457081489	560.626304078421	0	22.0642088037735						332	12	3	NaN	NaN	NaN	0.048574	1	31395	11.679	8.7853	1	75233			6593	2442	5611	5757	6593	6593		
FTASAGIQVVGDDLTVTNPK	20	Unmodified	_FTASAGIQVVGDDLTVTNPK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.03112	2032.04769	1.6774	0.001706	-4.6248	-0.0047036	-2.9474	-0.0029976	1017.02697642141	13.274	0.30154	13.274	13.159	13.46	0	177	58	1.2057522832638	0.0377649812720997	1.2057522832638	486.215341341633	0	15.2285950562509						750	35	3	NaN	NaN	NaN	0.022017	1	32188	36.059	32.618	1	206160			6594	544	5612	5758	6594	6594		
FTASAGIQVVGDDLTVTNPK	20	Unmodified	_FTASAGIQVVGDDLTVTNPK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.356505	2032.04769	1.4786	0.001003	1.088	0.00073808	2.5666	0.0017411	678.358831256157	13.806	0.23057	13.806	13.744	13.974	0	525	88	0.973257487423603	0.0585374784835547	0.973257487423603	588.691954450344	0	35.4074261563632						707	27	4	NaN	NaN	NaN	1.3683E-05	1	32192	90.376	76.598	1	178970			6595	544	5612	5758	6595	6595		
FTASAGIQVVGDDLTVTNPK	20	Unmodified	_FTASAGIQVVGDDLTVTNPK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.03112	2032.04769	2.5249	0.0025679	-0.03733	-3.7965E-05	2.4876	0.0025299	1017.53283595996	13.824	0.78914	13.824	13.744	14.533	0	165	181	1.21370334790578	0.119086651582986	1.21370334790578	489.421564770704	0	48.0212693337426						6254	90	7	NaN	NaN	NaN	9.0382E-48	1	32193	269	225.39	1	4632100			6596	544	5612	5758	6596	6596		
FTATASLGVIHK	12	Unmodified	_FTATASLGVIHK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.853512	1243.69247	1.8707	0.0011651	1.5677	0.00097647	3.4384	0.0021416	622.854583516524	7.9615	0.12415	7.9615	7.935	8.0591	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	412.118971705721	0	8.97340882868315						225	15	3	NaN	NaN	NaN	4.2021E-05	1	10748	104.39	89.939	1	55640			6597	2641	5613	5759	6597	6597		
FTCACPDGMLLAR	13	Unmodified	_FTCACPDGMLLAR_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.343814	1510.67308	2.1097	0.0015957	1.1811	0.00089332	3.2908	0.002489	756.344794196312	10.995	0.1685	10.995	10.915	11.083	0	432	55	1.035754240522	0.0362008098863784	1.035754240522	418.640893108691	0	14.6319839100572						640	20	4	NaN	NaN	NaN	3.0132E-07	1	18821	138.23	128.14	1	209650			6598	491	5614	5760	6598	6598		
FTCEMFHPNIYPDGR	15	Unmodified	_FTCEMFHPNIYPDGR_			0	0	0	P60604	P60604	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.611635	1882.81307	0.84455	0.00053089	0.91368	0.00057435	1.7582	0.0011052	628.94668904702	11.305	0.11532	11.305	11.27	11.385	0	633	64	0.900343422309015	0.0426364482720725	0.900343422309015	544.881104191144	0	25.8032595536661						580	14	4	NaN	NaN	NaN	0.0001443	1	29201	46.358	45.477	1	122300			6599	1308	5615	5761	6599	6599		
FTDEEVDELYR	11	Unmodified	_FTDEEVDELYR_			0	0	0	P19105;O14950	P19105	P19105	MYL12A;MYL12B	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.319896	1414.62524	2.0501	0.0014521	-3.972	-0.0028135	-1.9219	-0.0013613	708.818825294863	10.392	0.20396	10.392	10.339	10.543	0	495	73	0.993446994398923	0.0483879041747655	0.993446994398923	401.788195924153	0	19.5699305876836						894	24	4	NaN	NaN	NaN	1.0457E-05	1	15909	124.81	106.47	1	423920			6600	128	5616	5762	6600	6600		
FTDELMEQGLTYK	13	Unmodified	_FTDELMEQGLTYK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.873982	1573.73341	1.7369	0.0013684	-6.1767	-0.0048664	-4.4398	-0.003498	788.368194774463	12.44	0.19505	12.44	12.369	12.564	0	414	88	1.04781950764076	0.0582471616900897	1.04781950764076	423.363461328259	0	23.5343203727771						575	23	5	NaN	NaN	NaN	0.06218	1	20776	38.1	33.572	1	164260			6601	2422	5617	5763	6601	6601		
FTDSAIAMNSK	11	Unmodified	_FTDSAIAMNSK_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.784438	1183.55432	1.1731	0.00069537	0.67421	0.00039966	1.8473	0.001095	592.784622504155	6.2411	0.11534	6.2411	6.2057	6.321	0	606	34	0.918606045818476	0.022302429094845	0.918606045818476	372.221014050614	0	9.03698904580864						246	14	3	NaN	NaN	NaN	0.072355	1	8965	29.317	20.34	1	66012			6602	2391	5618	5764	6602	6602		
FTEDLVGSVVHVLSHR	16	Unmodified	_FTEDLVGSVVHVLSHR_			0	0	0	Q6P9B6	Q6P9B6	Q6P9B6	TLDC1	TLD domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	449.492884	1793.94243	-1.6991	-0.00076374	0.085631	3.8491E-05	-1.6135	-0.00072525	449.492492396217	15.792	0.070965	15.792	15.757	15.828	0	813	16	0.778007628350577	0.0102379555269594	0.778007628350577	628.01702020838	0	8.26419958978829						82	9	3	NaN	NaN	NaN	0.058571	1	27080	10.972	10.09	1	16465			6603	2070	5619	5765	6603	6603		
FTEDLVGSVVHVLSHR	16	Unmodified	_FTEDLVGSVVHVLSHR_			0	0	0	Q6P9B6	Q6P9B6	Q6P9B6	TLDC1	TLD domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.988087	1793.94243	-0.48509	-0.00029056	-0.94784	-0.00056775	-1.4329	-0.00085831	599.321810282498	15.783	0.088707	15.783	15.748	15.837	1.7764E-15	651	22	0.888155670855968	0.0142259494684417	0.888155670855968	537.699689867313	0	8.61255393424119						157	11	3	NaN	NaN	NaN	7.5373E-05	1	27082	51.569	41.319	1	37587			6604	2070	5619	5765	6604	6604		
FTEDSLLR	8	Unmodified	_FTEDSLLR_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.756007	979.497461	0.011774	5.7783E-06	-1.9823	-0.00097284	-1.9705	-0.00096706	490.754971343742	8.6446	0.31056	8.6446	8.5205	8.831	0	702	61	0.853568545818287	0.0407671084543637	0.853568545818287	346.696619657386	0	16.5585046023273						448	36	3	NaN	NaN	NaN	0.0011589	1	3828	100.75	75.904	1	113660			6605	849	5620	5766	6605	6605		
FTEEVVK	7	Unmodified	_FTEEVVK_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.229094	850.443634	-0.50824	-0.00021663	1.9108	0.00081445	1.4026	0.00059783	426.229703248756	4.7159	0.18621	4.7159	4.6716	4.8578	0	765	37	0.810730346695089	0.0245215525463975	0.810730346695089	329.987827704754	0	9.98089425136192						312	22	3	NaN	NaN	NaN	0.026367	1	1566	66.087	38.382	1	105350			6606	1123	5621	5767	6606	6606		
FTEGFQNIVDAYGVGSYR	18	Unmodified	_FTEGFQNIVDAYGVGSYR_			0	0	0	Q9Y487	Q9Y487	Q9Y487	ATP6V0A2	V-type proton ATPase 116 kDa subunit a isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.98143	2021.94831	0.85663	0.00086689	-0.71561	-0.00072419	0.14101	0.0001427	1012.48204228952	15.934	0.079812	15.934	15.899	15.978	0	204	31	1.18784641916898	0.0199049679099792	1.18784641916898	479.011087100413	0	8.02687970716653						122	10	2	NaN	NaN	NaN	0.0032056	1	32014	61.23	59.519	1	31553			6607	3405	5622	5768	6607	6607		
FTEILCLR	8	Unmodified	_FTEILCLR_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.283877	1050.5532	0.31249	0.00016446	-0.35429	-0.00018646	-0.041802	-2.2E-05	526.283695440958	12.405	0.20392	12.405	12.343	12.547	0	642	58	0.894250814548268	0.0386079489287342	0.894250814548268	362.880293785651	0	15.6668169844471						448	24	2	NaN	NaN	NaN	1.5943E-07	1	5484	126.2	97.103	1	228080			6608	669	5623	5769	6608	6608		
FTEWLHEVLK	10	Unmodified	_FTEWLHEVLK_			0	0	0	Q2TAL8	Q2TAL8	Q2TAL8	QRICH1	Glutamine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	434.567801	1300.68157	-2.91	-0.0012646	0.6981	0.00030337	-2.2119	-0.00096123	434.568363582758	13.221	0.070945	13.221	13.176	13.247	0	855	16	0.749315378969369	0.0102565166721267	0.749315378969369	454.959582127976	0	6.22741861465266						89	9	3	NaN	NaN	NaN	0.058534	1	12367	13.995	12.024	1	15212			6609	1925	5624	5770	6609	6609		
FTEYETQVK	9	Unmodified	_FTEYETQVK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.779679	1143.5448	2.3174	0.0013274	0.66397	0.00038031	2.9814	0.0017077	572.779916898418	5.0795	0.2483	5.0795	5.044	5.2923	0	597	34	0.924688525662974	0.0222993386334626	0.924688525662974	374.836652235325	0	9.0393783511438						482	29	3	NaN	NaN	NaN	0.00020595	1	7877	87.251	68.848	1	207710			6610	1634	5625	5771	6610	6610		
FTFGLDWVPK	10	Unmodified	_FTFGLDWVPK_			0	0	0	P45974;Q92995	P45974	P45974	USP5;USP13	Ubiquitin carboxyl-terminal hydrolase 5;Ubiquitin carboxyl-terminal hydrolase 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.318774	1208.623	-0.083353	-5.0455E-05	-0.4993	-0.00030224	-0.58266	-0.00035269	605.318445021336	17.459	0.19508	17.459	17.362	17.557	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	372.953512306711	0	9.85686050921515						489	23	4	NaN	NaN	NaN	0.0099891	1	9698	43.272	36.581	1	172220			6611	1072	5626	5772	6611	6611		
FTFPDPPPLSPPVLGLHGVTFGYQGQK	27	Unmodified	_FTFPDPPPLSPPVLGLHGVTFGYQGQK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	966.172593	2895.49595	1.2395	0.0011976	0.17459	0.00016868	1.4141	0.0013663	966.506845730751	18.798	0.12415	18.798	18.727	18.851	0	369	49	1.07793901817685	0.0321075493337244	1.07793901817685	650.690428794725	0	19.3814999654101						544	15	4	NaN	NaN	NaN	0.0006492	1	38066	25.664	25.642	1	105970			6612	2308	5627	5773	6612	6612		
FTFYDGPPFATGLPHYGHILAGTIK	25	Unmodified	_FTFYDGPPFATGLPHYGHILAGTIK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	680.852241	2719.37986	0.083257	5.6685E-05	0.78722	0.00053598	0.87047	0.00059266	681.354172580002	16.706	0.35464	16.706	16.555	16.91	0	504	85	0.987393073566096	0.0565306657497275	0.987393073566096	794.955181899666	0	45.5131263091403						1175	41	4	NaN	NaN	NaN	0.040386	1	37663	28.263	28.05	1	209870			6613	1036	5628	5774	6613	6613		
FTFYDGPPFATGLPHYGHILAGTIK	25	Unmodified	_FTFYDGPPFATGLPHYGHILAGTIK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	907.467229	2719.37986	0.41347	0.00037521	0.85315	0.0007742	1.2666	0.0011494	907.802265019279	16.759	0.23944	16.759	16.635	16.874	0	432	61	1.035754240522	0.0402175744908813	1.035754240522	625.419430195455	0	24.284575952355						897	28	3	NaN	NaN	NaN	0.001257	1	37664	34.417	33.32	1	145320			6614	1036	5628	5774	6614	6614		
FTISDHPQPIDPLLK	15	Unmodified	_FTISDHPQPIDPLLK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.3138	1719.91957	0.79393	0.00045596	0.0050623	2.9073E-06	0.79899	0.00045887	574.313574605463	12.6	0.17734	12.6	12.529	12.706	0	543	79	0.961130371139249	0.0526236673337342	0.961130371139249	582.071249254506	0	31.8694785900824						636	21	5	NaN	NaN	NaN	0.00040309	1	25069	81.48	58.582	1	339040			6615	2175	5629	5775	6615	6615		
FTLDCTHPVEDGIMDAANFEQFLQER	26	Unmodified	_FTLDCTHPVEDGIMDAANFEQFLQER_			0	0	0	P35268	P35268	P35268	RPL22	60S ribosomal protein L22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1028.4673	3082.38007	1.7454	0.001795	-0.38937	-0.00040046	1.356	0.0013946	1028.80153975095	19.57	0.10642	19.57	19.534	19.641	0	366	133	1.07994477139643	0.0883568367698542	1.07994477139643	651.712178103168	0	53.3205290369891						1368	13	7	NaN	NaN	NaN	6.268E-43	1	38327	225.34	198.79	1	516270			6616	967	5630	5776	6616	6616		
FTLDCTHPVEDGIMDAANFEQFLQER	26	Oxidation (M)	_FTLDCTHPVEDGIM(Oxidation (M))DAANFEQFLQER_	FTLDCTHPVEDGIM(1)DAANFEQFLQER	FTLDCTHPVEDGIM(40)DAANFEQFLQER	0	1	0	P35268	P35268	P35268	RPL22	60S ribosomal protein L22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1033.79894	3098.37499	0.80952	0.00083688	-1.2937	-0.0013375	-0.48421	-0.00050058	1034.13224311919	18.949	0.07097	18.949	18.914	18.984	0	456	43	1.01965166402748	0.0281795132980842	1.01965166402748	615.312939021371	0	17.005041779806						226	9	5	NaN	NaN	NaN	0.00083651	1	38356	40.363	40.227	1	43900			6617	967	5630	5777	6617	6617	346	
FTLLQSVHIYK	11	Unmodified	_FTLLQSVHIYK_			0	0	0	P82664	P82664	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.258967	1347.75507	-2.0496	-0.00092285	1.1803	0.00053143	-0.86931	-0.00039141	450.259585740252	12.573	0.10637	12.573	12.538	12.644	0	777	22	0.802556497112065	0.0143092140004129	0.802556497112065	487.107190040342	0	8.6848976346318						146	13	3	NaN	NaN	NaN	0.053544	1	13843	32.14	21.438	1	36554			6618	1471	5631	5778	6618	6618		
FTLTGLKPDTTYDIK	15	Unmodified	_FTLTGLKPDTTYDIK_			0	0	1	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.641694	1711.90325	-1.3575	-0.00077598	-0.59378	-0.00033943	-1.9512	-0.0011154	571.641533636133	12.032	0.088691	12.032	11.988	12.077	0	735	52	0.831145085810763	0.0346592613234649	0.831145085810763	503.369537724883	0	20.9908193504626						271	11	4	NaN	NaN	NaN	0.036727	1	24828	24.744	16.369	1	54975			6619	627	5632	5779	6619	6619		
FTLTQSEADADILFNFSHFK	20	Unmodified	_FTLTQSEADADILFNFSHFK_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.714581	2330.12191	0.74195	0.00057703	0.055426	4.3106E-05	0.79738	0.00062013	778.049070334613	18.577	0.062071	18.577	18.55	18.612	0	432	25	1.035754240522	0.0160936862293779	1.035754240522	625.950586843836	0	9.72610291673311						196	8	4	NaN	NaN	NaN	0.0013203	1	35900	61.23	57.072	1	47204			6620	1733	5633	5780	6620	6620		
FTMDCVAPTIHVYEHHENR	19	Unmodified	_FTMDCVAPTIHVYEHHENR_			0	0	0	O43402	O43402	O43402	EMC8	ER membrane protein complex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	589.770394	2355.05247	0.43644	0.0002574	-0.079161	-4.6687E-05	0.35728	0.00021071	590.021000453312	8.9908	0.088697	8.9908	8.9464	9.0351	0	654	22	0.886123392477847	0.0142279235023115	0.886123392477847	713.983115321343	0	11.4639758220671						223	11	5	NaN	NaN	NaN	0.00056167	1	36092	52.662	52.662	1	60552			6621	200	5634	5781	6621	6621		
FTNLLTSILDSAETK	15	Unmodified	_FTNLLTSILDSAETK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.94071	1651.86687	2.3064	0.0019073	-1.0321	-0.00085348	1.2743	0.0010538	826.939705748728	19.676	0.15074	19.676	19.623	19.774	0	330	58	1.10399226369747	0.0380516101948882	1.10399226369747	445.875531754487	0	15.3681166867394						674	18	5	NaN	NaN	NaN	1.007E-43	1	23114	261.63	210.09	1	454260			6622	1903	5635	5782	6622	6622		
FTNMLGQPGSTALDLFK	17	Unmodified	_FTNMLGQPGSTALDLFK_			0	0	0	O75400	O75400	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.469112	1838.92367	1.8357	0.0016897	-0.215	-0.0001979	1.6207	0.0014918	920.469324148642	17.699	0.133	17.699	17.646	17.779	0	249	55	1.15795408347545	0.0359127357341398	1.15795408347545	467.273482690809	0	14.4919987233691						610	16	4	NaN	NaN	NaN	0.00018497	1	28195	76.563	68.189	1	145400			6623	332	5636	5783	6623	6623		
FTNTQITEHYSTCIK	15	Unmodified	_FTNTQITEHYSTCIK_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.961209	1841.8618	0.80792	0.00049684	0.41864	0.00025745	1.2266	0.00075429	615.295828521878	7.2077	0.070945	7.2077	7.1811	7.2521	0	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	542.511253752279	0	9.83481495445028						127	9	2	NaN	NaN	NaN	0.002907	1	28277	92.707	70.703	1	52307			6624	1786	5637	5784	6624	6624		
FTPPLEDSCFHYGFNSNYLK	20	Unmodified	_FTPPLEDSCFHYGFNSNYLK_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	812.703687	2435.08923	1.4815	0.001204	-0.87477	-0.00071093	0.60672	0.00049309	813.037102863986	14.533	0.12413	14.533	14.462	14.586	1.7764E-15	534	43	0.967195187796614	0.0282966100811786	0.967195187796614	584.368120493036	0	17.096483789516						317	15	4	NaN	NaN	NaN	0.034475	1	36502	22.724	21.298	1	80370			6625	551	5638	5785	6625	6625		
FTPVDESVTFIGR	13	Unmodified	_FTPVDESVTFIGR_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.377549	1466.74054	0.81515	0.00059863	-0.59327	-0.00043569	0.22188	0.00016294	734.377747966412	13.345	0.15078	13.345	13.283	13.434	0	468	40	1.01159370163332	0.0261901914841369	1.01159370163332	408.986635530565	0	10.5886763447654						247	18	3	NaN	NaN	NaN	0.027812	1	17483	39.293	30.316	1	52104			6626	1592	5639	5786	6626	6626		
FTQAGSEVSALLGR	14	Unmodified	_FTQAGSEVSALLGR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.380623	1434.74669	2.5169	0.0018081	-2.3842	-0.0017127	0.13271	9.5335E-05	718.880868600027	12.786	0.33698	12.786	12.706	13.043	0	471	169	1.00957851518677	0.112594035005684	1.00957851518677	408.256951469042	0	45.5311764202066						2134	39	6	NaN	NaN	NaN	9.0029E-06	1	16540	95.138	71.017	1	1703500			6627	541	5640	5787	6627	6627		
FTQDTQPHYIYSPR	14	Unmodified	_FTQDTQPHYIYSPR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.949521	1751.82673	1.2426	0.00072687	1.8537	0.0010843	3.0963	0.0018112	585.284732262017	6.6225	0.23943	6.6225	6.5427	6.7821	0	594	49	0.926715457081489	0.0324376543962731	0.926715457081489	561.147550229935	0	19.6417467309747						535	28	5	NaN	NaN	NaN	0.0049686	1	25945	43.306	39.323	1	132590			6628	1737	5641	5788	6628	6628		
FTQDTQPHYIYSPR	14	Unmodified	_FTQDTQPHYIYSPR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.920643	1751.82673	2.697	0.002365	0.60908	0.00053412	3.3061	0.0028992	877.423752508783	6.6225	0.11527	6.6225	6.5604	6.6757	0	258	76	1.15196821829984	0.0499646417940307	1.15196821829984	465.030959057093	0	20.1699186863978						439	14	3	NaN	NaN	NaN	1.7911E-08	1	25946	86.729	73.554	1	78773			6629	1737	5641	5788	6629	6629		
FTQISPVWLQLK	12	Unmodified	_FTQISPVWLQLK_			0	0	0	Q9BWS9	Q9BWS9	Q9BWS9	CHID1	Chitinase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.41902	1458.82349	0.3815	0.00027866	-0.34968	-0.00025541	0.031826	2.3246E-05	730.419335790138	16.466	0.10641	16.466	16.413	16.519	0	441	28	1.02971785871157	0.0181141482765854	1.02971785871157	416.335331947009	0	7.32390904155619						203	13	3	NaN	NaN	NaN	0.00028168	1	17238	70.389	64.893	1	49666			6630	2782	5642	5789	6630	6630		
FTQLDLEDVQVR	12	Unmodified	_FTQLDLEDVQVR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.880456	1461.74636	2.5202	0.0018445	0.90959	0.00066571	3.4298	0.0025102	731.882876868444	12.893	0.23942	12.893	12.795	13.034	0	435	106	1.03374239103424	0.0703080283137956	1.03374239103424	417.954673425143	0	28.4263944943368						989	28	4	NaN	NaN	NaN	2.4787E-06	1	17321	103.69	92.331	1	329680			6631	3042	5643	5790	6631	6631		
FTQSALDCMSVEVGR	15	Unmodified	_FTQSALDCMSVEVGR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.392547	1698.77054	0.97469	0.00082887	0.79958	0.00067995	1.7743	0.0015088	850.393322868736	11.66	0.062072	11.66	11.624	11.687	0	366	22	1.07994477139643	0.0140383382259719	1.07994477139643	436.063147068688	0	5.6684398207849						105	8	3	NaN	NaN	NaN	0.01982	1	24455	34.472	33.104	1	17403			6632	1736	5644	5791	6632	6632		
FTQTSGETTDADK	13	Unmodified	_FTQTSGETTDADK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.812436	1399.61032	1.6387	0.0011484	-0.48057	-0.00033679	1.1581	0.00081164	700.812605729135	2.5523	0.035464	2.5523	2.5434	2.5789	0	534	16	0.967195187796614	0.0101052309650996	0.967195187796614	391.211568173222	0	4.08736861234314						36	5	2	NaN	NaN	NaN	4.2975E-06	1	15430	131.54	125.68	1	5535			6633	1074	5645	5792	6633	6633		
FTSGAFLSPSVSVQECR	17	Unmodified	_FTSGAFLSPSVSVQECR_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.45145	1870.88835	1.5004	0.001405	5.5948	0.0052392	7.0951	0.0066442	936.457004040282	12.041	0.10641	12.041	11.997	12.103	0	297	70	1.12600091227925	0.0459484966240524	1.12600091227925	454.321160378385	0	18.5393937751134						550	13	4	NaN	NaN	NaN	0.023039	1	28958	49.487	41.119	1	125570			6634	1227	5646	5793	6634	6634		
FTSLGLLPR	9	Unmodified	_FTSLGLLPR_			0	0	0	Q02127	Q02127	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.300384	1002.58622	-0.81052	-0.00040713	-0.26608	-0.00013365	-1.0766	-0.00054078	502.300127764634	12.582	0.14187	12.582	12.52	12.662	0	690	34	0.86171403876517	0.0223954425033767	0.86171403876517	349.893464782701	0	9.09352594983505						170	17	2	NaN	NaN	NaN	0.02572	1	4363	37.722	26.894	1	38402			6635	1525	5647	5794	6635	6635		
FTSPADLDASGAGPGPK	17	Unmodified	_FTSPADLDASGAGPGPK_			0	0	0	P52735	P52735	P52735	VAV2	Guanine nucleotide exchange factor VAV2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.386102	1586.75765	2.0573	0.0016343	-1.2727	-0.001011	0.78464	0.0006233	794.886731283964	8.4938	0.29264	8.4938	8.3785	8.6712	0	414	40	1.04781950764076	0.0261360051694259	1.04781950764076	423.333131075419	0	10.5592965405734						337	34	2	NaN	NaN	NaN	0.0035766	1	21167	72.327	60.369	1	94969			6636	1220	5648	5795	6636	6636		
FTTDDSICVLGISK	14	Unmodified	_FTTDDSICVLGISK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.387256	1554.75996	1.6173	0.0012589	-0.11318	-8.8101E-05	1.5041	0.0011708	778.387749563732	13.212	0.32814	13.212	13.132	13.46	0	402	52	1.05585747106793	0.0341589991885669	1.05585747106793	426.656523720347	0	13.8031507536896						845	38	5	NaN	NaN	NaN	3.8535E-24	1	20195	197.3	176.21	1	283210			6637	1521	5649	5796	6637	6637		
FTVDLPK	7	Unmodified	_FTVDLPK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	410.234179	818.453805	-1.352	-0.00055465	-0.33858	-0.0001389	-1.6906	-0.00069355	410.233981736167	9.8509	0.14189	9.8509	9.7622	9.9041	0	825	25	0.769815552739974	0.0163864344755192	0.769815552739974	313.528766583452	0	6.67383059685397						155	17	2	NaN	NaN	NaN	0.022887	1	1192	56.091	43.538	1	33515			6638	1392	5650	5797	6638	6638		
FTVETASR	8	Unmodified	_FTVETASR_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.735074	909.455596	-0.49215	-0.00022429	0.72415	0.00033002	0.23199	0.00010573	455.735057200694	4.3435	0.16847	4.3435	4.2815	4.4499	0	780	34	0.800512323802183	0.0224890390033184	0.800512323802183	325.493077525406	0	9.14417717020416						363	20	4	NaN	NaN	NaN	0.027079	1	2498	58.286	24.473	1	105620			6639	652	5651	5798	6639	6639		
FTYCSQVLGLHCYK	14	Unmodified	_FTYCSQVLGLHCYK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.612975	1774.8171	0.37303	0.00022106	1.0123	0.00059988	1.3853	0.00082094	592.613744877605	10.188	0.088667	10.188	10.161	10.25	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	538.974370597723	0	13.5313765041126						298	11	4	NaN	NaN	NaN	0.00011609	1	26531	57.293	49.717	1	79969			6640	1745	5652	5799	6640	6640		
FTYGFQNIVDAYGIGTYR	18	Unmodified	_FTYGFQNIVDAYGIGTYR_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.00745	2084.00034	0.59389	0.00061943	3.7646	0.0039265	4.3585	0.0045459	1043.01292816562	18.089	0.11527	18.089	18.053	18.169	0	159	40	1.21767724410157	0.0258250155213748	1.21767724410157	490.940938705248	0	10.4120836810873						253	14	3	NaN	NaN	NaN	0.0013716	1	33081	49.967	46.117	1	45231			6641	2454	5653	5800	6641	6641		
FVADGIFK	8	Unmodified	_FVADGIFK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.747453	895.480354	-0.98948	-0.00044403	-1.3672	-0.00061353	-2.3567	-0.0010576	448.746967905359	10.897	0.22169	10.897	10.844	11.066	0	786	37	0.796423123669906	0.0245386198343958	0.796423123669906	323.905564017826	0	9.9798653020693						407	26	3	NaN	NaN	NaN	0.051823	1	2262	42.835	25.14	1	157600			6642	819	5654	5801	6642	6642		
FVAFSGEGQSLR	12	Unmodified	_FVAFSGEGQSLR_			0	0	0	Q92890	Q92890	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.330402	1296.64625	1.2379	0.00080381	-2.8231	-0.0018331	-1.5851	-0.0010293	649.329081689557	9.3011	0.18627	9.3011	9.177	9.3632	0	525	73	0.973257487423603	0.0484615459622925	0.973257487423603	393.969332380787	0	19.6169699751771						531	22	2	NaN	NaN	NaN	0.067572	1	12252	33.723	25.541	1	205220			6643	2440	5655	5802	6643	6643		
FVALENISCK	10	Unmodified	_FVALENISCK_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.805174	1179.59579	0.60378	0.00035672	4.1214	0.0024349	4.7251	0.0027916	590.809510391484	9.4253	0.32804	9.4253	9.3455	9.6736	0	600	49	0.922661313351899	0.0324376543962731	0.922661313351899	373.878657115373	0	13.1443103662738						365	38	4	NaN	NaN	NaN	0.0010127	1	8872	83.623	62.965	1	107660			6644	2334	5656	5803	6644	6644		
FVAPEEVLPFTEGDILEK	18	Unmodified	_FVAPEEVLPFTEGDILEK_			0	0	0	P49770	P49770	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.02751	2032.04047	0.9539	0.00097014	0.90017	0.0009155	1.8541	0.0018856	1017.52956657866	18.293	0.11528	18.293	18.248	18.364	0	141	85	1.2295923935727	0.0556498662235632	1.2295923935727	495.828774790229	0	22.4406113205497						624	14	5	NaN	NaN	NaN	0.00011342	1	32189	85.813	80.198	1	171620			6645	1148	5657	5804	6645	6645		
FVCSPDEVMDTIDEGK	16	Unmodified	_FVCSPDEVMDTIDEGK_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.400234	1840.78592	2.6018	0.0023973	-0.23168	-0.00021347	2.3701	0.0021838	921.901544665029	13.593	0.20394	13.593	13.469	13.673	0	282	34	1.13599383354359	0.0219814046771438	1.13599383354359	458.408310293999	0	8.87017013508415						619	24	4	NaN	NaN	NaN	2.9683E-06	1	28241	78.157	74.174	1	176980			6646	944	5658	5805	6646	6646		
FVDEEDGGDGQAGPDEGEVDSCLR	24	Unmodified	_FVDEEDGGDGQAGPDEGEVDSCLR_			0	0	0	O15511	O15511	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1277.01954	2552.02452	1.8565	0.0023708	-1.6366	-0.0020899	0.21993	0.00028086	1277.51893301347	9.1238	0.044339	9.1238	9.106	9.1504	0	99	70	1.25735632164274	0.0455965602890394	1.25735632164274	506.322831120595	0	18.3612068413071						245	6	3	NaN	NaN	NaN	4.997E-14	1	37036	80.175	79.941	1	40604			6647	179	5659	5806	6647	6647		
FVDEGSLYGLSIATSR	16	Unmodified	_FVDEGSLYGLSIATSR_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.935959	1713.85737	2.4192	0.0020756	2.8028	0.0024047	5.2221	0.0044802	857.939657313597	14.4	0.1596	14.4	14.338	14.498	0	324	67	1.1079963157843	0.0440385331725945	1.1079963157843	447.35799988176	0	17.7807361244455						606	17	4	NaN	NaN	NaN	1.1935E-08	1	24881	102.57	90.548	1	172570			6648	3431	5660	5807	6648	6648		
FVDEQEEAAAAAAEPGPDPSEVDGLLR	27	Unmodified	_FVDEQEEAAAAAAEPGPDPSEVDGLLR_			0	0	0	Q9BPX5	Q9BPX5	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	928.438392	2782.29335	0.76878	0.00071376	1.4815	0.0013754	2.2502	0.0020892	928.774323720312	14.728	0.04433	14.728	14.701	14.746	0	423	31	1.04178812298108	0.0201115556839417	1.04178812298108	628.990502646978	0	12.142562618642						130	6	4	NaN	NaN	NaN	0.023112	1	37843	27.344	27.194	1	23815			6649	2688	5661	5808	6649	6649		
FVDGEWYR	8	Unmodified	_FVDGEWYR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.248349	1070.48214	0.67946	0.00036436	1.2635	0.00067755	1.9429	0.0010419	536.249195394452	9.1149	0.22169	9.1149	9.0528	9.2745	0	666	49	0.877991458330206	0.0325458093400007	0.877991458330206	356.196536330519	0	13.2036643967232						598	26	4	NaN	NaN	NaN	0.011132	1	5960	81.32	70.492	1	358790			6650	2108	5662	5809	6650	6650		
FVDGLMIHSGDPVNYYVDTAVR	22	Unmodified	_FVDGLMIHSGDPVNYYVDTAVR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1234.59937	2467.1842	0.64694	0.00079871	0.010073	1.2436E-05	0.65701	0.00081115	1235.10172535463	15.189	0.062065	15.189	15.163	15.225	0	63	34	1.28111162701928	0.0217622834966473	1.28111162701928	515.984959233308	0	8.76505272922037						194	8	5	NaN	NaN	NaN	0.043887	1	36664	11.766	11.511	1	32609			6651	819	5663	5810	6651	6651		
FVDGLMIHSGDPVNYYVDTAVR	22	Unmodified	_FVDGLMIHSGDPVNYYVDTAVR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.402008	2467.1842	1.3225	0.0010889	0.81702	0.00067274	2.1395	0.0017617	823.737328288078	15.198	0.31035	15.198	15.074	15.384	0	519	88	0.97729762293174	0.058610396823674	0.97729762293174	590.428313812843	0	35.4091087059979						1534	36	6	NaN	NaN	NaN	4.0879E-23	1	36665	216.98	206.33	1	804110			6652	819	5663	5810	6652	6652		
FVDGLMIHSGDPVNYYVDTAVR	22	Oxidation (M)	_FVDGLM(Oxidation (M))IHSGDPVNYYVDTAVR_	FVDGLM(1)IHSGDPVNYYVDTAVR	FVDGLM(130)IHSGDPVNYYVDTAVR	0	1	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.733646	2483.17911	1.8621	0.0015432	-1.3323	-0.0011041	0.52986	0.00043911	829.066808052473	14.267	0.15072	14.267	14.223	14.373	0	537	70	0.965173861991602	0.0464969566450577	0.965173861991602	583.082792464397	0	28.0898358206184						846	18	6	NaN	NaN	NaN	2.0959E-16	1	36743	127.25	125.73	1	296580			6653	819	5663	5811	6653	6653	275	
FVDHVFDEQVIDSLTVK	17	Unmodified	_FVDHVFDEQVIDSLTVK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.342196	1990.00476	0.62964	0.00041829	-1.2352	-0.00082062	-0.6056	-0.00040233	664.675643440081	15.588	0.14187	15.588	15.544	15.686	0	597	91	0.924688525662974	0.0608712518412119	0.924688525662974	559.394268725172	0	36.8243235047033						877	17	4	NaN	NaN	NaN	3.9136E-05	1	31458	95.656	88.08	1	268200			6654	518	5664	5812	6654	6654		
FVDILGLR	8	Unmodified	_FVDILGLR_			0	0	0	Q8WYA6	Q8WYA6	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.781828	931.549102	-1.3789	-0.00064363	-2.5969	-0.0012122	-3.9758	-0.0018558	466.781181102192	14.932	0.25714	14.932	14.808	15.065	0	735	37	0.831145085810763	0.0244806636319601	0.831145085810763	337.829297452026	0	9.95047138837015						357	30	3	NaN	NaN	NaN	0.0033119	1	2907	66.087	50.589	1	116240			6655	2400	5665	5813	6655	6655		
FVDILTNWYVR	11	Unmodified	_FVDILTNWYVR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.379894	1424.74524	0.8408	0.00059981	-0.57619	-0.00041104	0.26461	0.00018877	713.880747561137	17.929	0.15071	17.929	17.867	18.018	0	438	55	1.03173026378327	0.0362258060074347	1.03173026378327	417.242712666795	0	14.6501019672117						436	18	3	NaN	NaN	NaN	0.0045722	1	16232	53.517	36.121	1	162180			6656	1036	5666	5814	6656	6656		
FVDLYGAQK	9	Unmodified	_FVDLYGAQK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.7742	1039.53385	0.91737	0.00047774	-0.17535	-9.1317E-05	0.74202	0.00038643	520.774384019562	7.935	0.1862	7.935	7.8818	8.068	-8.8818E-16	669	49	0.875957769340875	0.0325458093400007	0.875957769340875	355.505855049005	0	13.2086570638959						512	22	3	NaN	NaN	NaN	0.00076759	1	5219	97.033	79.338	1	235940			6657	1026	5667	5815	6657	6657		
FVDPSAALDLLK	12	Unmodified	_FVDPSAALDLLK_			0	0	0	Q96RU2	Q96RU2	Q96RU2	USP28	Ubiquitin carboxyl-terminal hydrolase 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.861003	1287.70745	0.42122	0.00027163	-0.86271	-0.00055633	-0.44149	-0.0002847	644.860794646682	17.583	0.13302	17.583	17.513	17.646	0	522	34	0.975277694896658	0.0222192115744939	0.975277694896658	394.815980161906	0	8.99487381092842						267	16	3	NaN	NaN	NaN	0.0022193	1	12003	77.358	66.656	1	52094			6658	2615	5668	5816	6658	6658		
FVEFFGPGVAQLSIADR	17	Unmodified	_FVEFFGPGVAQLSIADR_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.983244	1851.95193	1.3016	0.0012065	-0.028996	-2.6879E-05	1.2726	0.0011797	927.484285829535	17.832	0.079803	17.832	17.796	17.876	0	207	37	1.18585551256002	0.023895805459075	1.18585551256002	478.50744601729	0	9.64225465888637						227	10	3	NaN	NaN	NaN	6.7188E-07	1	28545	83.474	81.886	1	47148			6659	793	5669	5817	6659	6659		
FVEGLPINDFSR	12	Unmodified	_FVEGLPINDFSR_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.359159	1392.70376	1.7751	0.0012379	-1.5919	-0.0011101	0.18325	0.00012779	697.359582262497	13.895	0.31918	13.895	13.735	14.054	0	501	55	0.98941132619024	0.0363310729406037	0.98941132619024	400.216982245496	0	14.6959227058956						1459	37	6	NaN	NaN	NaN	3.9808E-05	1	15238	87.942	77.24	1	1219800			6660	1022	5670	5818	6660	6660		
FVELPGAEMGK	11	Unmodified	_FVELPGAEMGK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.299724	1176.5849	1.3404	0.00078988	0.44261	0.00026083	1.783	0.0010507	589.299922979598	10.401	0.18623	10.401	10.33	10.516	0	627	73	0.90440375274676	0.0486969825193961	0.90440375274676	366.491227522539	0	19.7334617928929						863	22	4	NaN	NaN	NaN	0.00023982	1	8782	74.424	63.722	1	397120			6661	565	5671	5819	6661	6661		
FVEQLGSYDPLPNSHGEK	18	Unmodified	_FVEQLGSYDPLPNSHGEK_			0	0	0	Q9Y3D3	Q9Y3D3	Q9Y3D3	MRPS16	28S ribosomal protein S16, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.993566	2015.95887	0.11415	7.6821E-05	-0.40509	-0.00027262	-0.29094	-0.0001958	673.327591743368	10.693	0.13298	10.693	10.613	10.746	0	690	43	0.86171403876517	0.0284973564255872	0.86171403876517	521.251136072307	0	17.2380612867593						487	16	4	NaN	NaN	NaN	2.6754E-07	1	31907	94.63	69.016	1	112920			6662	3387	5672	5820	6662	6662		
FVESILSNNTTDDHCQEFVNQK	22	Unmodified	_FVESILSNNTTDDHCQEFVNQK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.734375	2624.18129	1.8454	0.0016161	0.55056	0.00048214	2.396	0.0020982	876.069039617391	10.569	0.070939	10.569	10.534	10.605	0	489	61	0.997481546940468	0.0403455444968032	0.997481546940468	602.42036820102	0	24.3663432627746						443	9	5	NaN	NaN	NaN	3.1771E-08	1	37333	77.696	74.444	1	91685			6663	2149	5673	5821	6663	6663		
FVESVDEYQFVER	13	Unmodified	_FVESVDEYQFVER_			0	0	0	Q13405	Q13405	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.888478	1645.7624	1.3987	0.0011524	1.7051	0.0014048	3.1038	0.0025572	823.88899319019	11.828	0.12413	11.828	11.758	11.882	0	384	40	1.06790610341098	0.0260927771036219	1.06790610341098	431.314508850972	0	10.5385607452375						313	15	4	NaN	NaN	NaN	4.181E-11	1	22907	127.03	101.41	1	115000			6664	1660	5674	5822	6664	6664		
FVFDIFQFAK	10	Unmodified	_FVFDIFQFAK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.334424	1260.6543	0.8747	0.00055223	-1.4509	-0.00091597	-0.57615	-0.00036374	631.333512719048	19.818	0.079791	19.818	19.791	19.871	0	567	40	0.944945209309785	0.0263172834355764	0.944945209309785	382.623767812675	0	10.6562984260955						227	10	4	NaN	NaN	NaN	5.1223E-05	1	11236	91.783	71.549	1	94262			6665	1880	5675	5823	6665	6665		
FVFFNIPQIQYK	12	Unmodified	_FVFFNIPQIQYK_			0	0	0	P82663	P82663	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.41902	1542.82349	1.6072	0.0012414	-0.77533	-0.00059888	0.83189	0.00064257	772.418074327238	18.346	0.12411	18.346	18.293	18.417	0	366	82	1.07994477139643	0.0541927269702893	1.07994477139643	436.419651295084	0	21.8999819560418						561	15	4	NaN	NaN	NaN	2.1843E-07	1	19829	141.93	122.61	1	165810			6666	1470	5676	5824	6666	6666		
FVFLLDR	7	Unmodified	_FVFLLDR_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.263271	908.511988	-1.4464	-0.00065851	-1.6554	-0.00075364	-3.1018	-0.0014121	455.262441743802	14.577	0.11528	14.577	14.533	14.648	0	747	28	0.822982596624503	0.0183694328474171	0.822982596624503	334.634806323084	0	7.46923644360487						166	14	3	NaN	NaN	NaN	0.018744	1	2486	66.087	56.008	1	34627			6667	1621	5677	5825	6667	6667		
FVFSLVDAMNGK	12	Unmodified	_FVFSLVDAMNGK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.339381	1326.66421	0.52504	0.0003488	-4.2801	-0.0028434	-3.755	-0.0024946	664.836268663519	16.599	0.23056	16.599	16.537	16.768	0	534	67	0.967195187796614	0.0444415161017796	0.967195187796614	391.421955046655	0	17.9853925425588						583	27	2	NaN	NaN	NaN	2.5554E-06	1	13182	139.02	100.01	1	307870			6668	1023	5678	5826	6668	6668		
FVGDPALVLNDIHK	14	Unmodified	_FVGDPALVLNDIHK_			0	0	0	Q14118	Q14118	Q14118	DAG1	Dystroglycan;Alpha-dystroglycan;Beta-dystroglycan	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.422291	1536.83003	2.3383	0.0017991	2.7574	0.0021216	5.0957	0.0039207	769.926172293665	12.972	0.12414	12.972	12.901	13.026	0	315	40	1.11400032671325	0.0260066420921716	1.11400032671325	450.197541403699	0	10.5099846465982						225	15	3	NaN	NaN	NaN	8.6298E-05	1	19642	79.889	71.416	1	38474			6669	1720	5679	5827	6669	6669		
FVGGGVTSAGLVQEEIR	17	Unmodified	_FVGGGVTSAGLVQEEIR_			0	0	0	Q86W56	Q86W56	Q86W56	PARG	Poly(ADP-ribose) glycohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.957226	1717.8999	1.3726	0.0011804	-0.3618	-0.00031113	1.0108	0.00086924	859.95716218627	11.917	0.079823	11.917	11.882	11.961	0	324	31	1.1079963157843	0.0200147497946634	1.1079963157843	447.349565776097	0	8.0808839363533						146	10	3	NaN	NaN	NaN	0.019794	1	24999	32.61	26.233	1	30677			6670	2178	5680	5828	6670	6670		
FVGIKDEDQLEAFLK	15	Unmodified	_FVGIKDEDQLEAFLK_			0	0	1	Q99757	Q99757	Q99757	TXN2	Thioredoxin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.645327	1750.91415	-0.94337	-0.00055154	-0.58571	-0.00034243	-1.5291	-0.00089397	584.979255861464	14.941	0.070929	14.941	14.923	14.994	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	514.390353876323	0	9.87009079400156						142	9	3	NaN	NaN	NaN	5.2393E-05	1	25925	72.327	64.769	1	32769			6671	2672	5681	5829	6671	6671		
FVGPGGYNLK	10	Unmodified	_FVGPGGYNLK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.282192	1050.54983	0.46918	0.00024692	3.9522	0.0020799	4.4213	0.0023269	526.785895422899	8.1124	0.22176	8.1124	8.0237	8.2454	0	669	64	0.875957769340875	0.042731211906597	0.875957769340875	355.457107740212	0	17.3400060210463						308	26	3	NaN	NaN	NaN	0.033557	1	5486	34.931	16.529	1	79748			6672	2345	5682	5830	6672	6672		
FVGQDVEGER	10	Unmodified	_FVGQDVEGER_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.272552	1134.53055	1.8457	0.0010489	1.7608	0.0010006	3.6065	0.0020495	568.273599782176	4.9021	0.31032	4.9021	4.7691	5.0795	0	648	85	0.890187667287968	0.0568762246107581	0.890187667287968	360.885352995905	0	23.0578305564055						958	36	4	NaN	NaN	NaN	5.5876E-05	1	7646	70.389	52.994	1	341620			6673	741	5683	5831	6673	6673		
FVGTDPASDEVVLMK	15	Unmodified	_FVGTDPASDEVVLMK_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.402906	1606.79126	1.6864	0.0013566	0.18264	0.00014692	1.8691	0.0015035	804.403113591404	12.29	0.10643	12.29	12.245	12.352	0	381	49	1.06991323971056	0.0321075493337244	1.06991323971056	432.212655206501	0	12.9704808153012						387	13	4	NaN	NaN	NaN	2.0891E-08	1	21817	95.138	78.85	1	108930			6674	2408	5684	5832	6674	6674		
FVHDNYVIR	9	Unmodified	_FVHDNYVIR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.803823	1161.59309	2.3008	0.0013386	-0.56275	-0.00032741	1.738	0.0010112	581.804016907954	5.6115	0.36358	5.6115	5.5051	5.8687	0	564	91	0.946969335010767	0.0607701092448423	0.946969335010767	383.797456406587	0	24.6295339156423						1213	42	5	NaN	NaN	NaN	7.575E-06	1	8380	133.98	88.488	1	1357600			6675	922	5685	5833	6675	6675		
FVHFIDAPSLALIMPIVQR	19	Unmodified	_FVHFIDAPSLALIMPIVQR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.074727	2166.20235	0.35221	0.00025467	-0.56337	-0.00040736	-0.21116	-0.00015269	723.408586553376	19.712	0.062073	19.712	19.685	19.747	0	612	61	0.914549654013882	0.0405414565630254	0.914549654013882	552.949176070003	0	24.5119167721674						388	8	4	NaN	NaN	NaN	3.5564E-08	1	34263	101.64	92.879	1	98430			6676	2420	5686	5834	6676	6676		
FVHFIDAPSLALIMPIVQR	19	Oxidation (M)	_FVHFIDAPSLALIM(Oxidation (M))PIVQR_	FVHFIDAPSLALIM(1)PIVQR	FVHFIDAPSLALIM(61)PIVQR	0	1	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.406365	2182.19727	-0.44883	-0.00032693	-0.60801	-0.00044288	-1.0568	-0.00076981	728.406113852304	18.124	0.035447	18.124	18.107	18.142	0	570	25	0.942920803299286	0.0161986138950868	0.942920803299286	570.076157783498	0	9.79344557720867						64	5	3	NaN	NaN	NaN	0.00036801	1	34486	61.194	56.888	1	9846.5			6677	2420	5686	5835	6677	6677	598	
FVHFIDAPSLALIMPIVQR	19	Oxidation (M)	_FVHFIDAPSLALIM(Oxidation (M))PIVQR_	FVHFIDAPSLALIM(1)PIVQR	FVHFIDAPSLALIM(46)PIVQR	0	1	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.406365	2182.19727	-0.77565	-0.00056499	0.54047	0.00039368	-0.23518	-0.00017131	728.741730265457	18.115	0.044318	18.115	18.107	18.151	0	615	22	0.912521036363781	0.0142003243693484	0.912521036363781	551.696898303315	0	8.58530882826392						72	6	3	NaN	NaN	NaN	0.010505	1	34487	46.068	33.385	1	11590			6678	2420	5686	5835	6678	6678	598	
FVHLLDQSDQDFQEELDLMK	20	Unmodified	_FVHLLDQSDQDFQEELDLMK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.389657	2449.14714	0.44311	0.0003622	-0.60958	-0.00049827	-0.16647	-0.00013607	817.723480585855	17.184	0.14189	17.184	17.149	17.291	0	531	67	0.969216233931596	0.04447227026681	0.969216233931596	585.570144853458	0	26.8687552172553						909	17	5	NaN	NaN	NaN	1.7985E-11	1	36573	157.52	127.54	1	312380			6679	1095	5687	5836	6679	6679		
FVHSENQHLVSPEALDFLDK	20	Unmodified	_FVHSENQHLVSPEALDFLDK_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.721847	2324.14371	0.80133	0.00062161	-1.0621	-0.00082387	-0.26074	-0.00020226	776.055374966783	13.096	0.14188	13.096	13.034	13.176	0	561	46	0.948993180460448	0.0303492849683255	0.948993180460448	573.525910998562	0	18.3416505703112						656	17	4	NaN	NaN	NaN	1.7298E-05	1	35850	43.177	41.553	1	184820			6680	1450	5688	5837	6680	6680		
FVHSENQHLVSPEALDFLDK	20	Unmodified	_FVHSENQHLVSPEALDFLDK_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	582.043204	2324.14371	-0.75867	-0.00044158	0.68304	0.00039756	-0.075632	-4.4021E-05	582.294949663857	13.114	0.10639	13.114	13.043	13.15	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	696.009998668481	0	13.1218183998217						220	13	4	NaN	NaN	NaN	0.00075196	1	35851	39.587	37.616	1	50774			6681	1450	5688	5837	6681	6681		
FVIATSTK	8	Unmodified	_FVIATSTK_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.752736	865.490919	-2.2096	-0.00095844	0.69387	0.00030097	-1.5158	-0.00065747	433.753154165627	5.8509	0.21285	5.8509	5.8155	6.0283	0	795	34	0.790287188799094	0.0225046954516063	0.790287188799094	321.578178536489	0	9.15745449808338						366	25	3	NaN	NaN	NaN	0.0034028	1	1791	82.716	47.083	1	198100			6682	1533	5689	5838	6682	6682		
FVIEENLHCIIK	12	Unmodified	_FVIEENLHCIIK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.606038	1513.79629	-1.5406	-0.00077896	-0.63708	-0.00032211	-2.1777	-0.0011011	505.605483560749	12.361	0.11527	12.361	12.325	12.44	0	762	37	0.812773098473386	0.0245113207191667	0.812773098473386	492.759224834426	0	14.8604566513469						299	14	4	NaN	NaN	NaN	0.0028513	1	18931	44.82	41.213	1	92146			6683	1583	5690	5839	6683	6683		
FVIEENLHCIIK	12	Unmodified	_FVIEENLHCIIK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.905419	1513.79629	1.89	0.0014325	1.7982	0.0013628	3.6882	0.0027953	757.906924692068	12.369	0.12414	12.369	12.325	12.449	0	330	28	1.10399226369747	0.0180219585997581	1.10399226369747	446.213618291636	0	7.28414828611858						278	15	4	NaN	NaN	NaN	1.6214E-05	1	18934	132.39	118.4	1	71617			6684	1583	5690	5839	6684	6684		
FVIHCNSPVWGADK	14	Unmodified	_FVIHCNSPVWGADK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.932925	1628.77695	-1.3842	-0.0007529	-0.4114	-0.00022377	-1.7956	-0.00097667	543.932957708322	9.2213	0.18625	9.2213	9.1681	9.3544	0	786	55	0.796423123669906	0.0368079377727304	0.796423123669906	482.538163823338	0	22.3012544200544						716	22	5	NaN	NaN	NaN	1.2709E-11	1	22435	156.14	134.14	1	386420			6685	324	5691	5840	6685	6685		
FVIHCNSPVWGADK	14	Unmodified	_FVIHCNSPVWGADK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.39575	1628.77695	2.419	0.0019725	1.7648	0.001439	4.1838	0.0034115	815.395898568953	9.2213	0.19514	9.2213	9.177	9.3721	0	354	61	1.08796502040166	0.0401067904857699	1.08796502040166	439.454317147312	0	16.2000633250024						451	23	4	NaN	NaN	NaN	0.001672	1	22437	63.766	53.281	1	179190			6686	324	5691	5840	6686	6686		
FVIHPESNNLIIIETDHNAYTEATK	25	Unmodified	_FVIHPESNNLIIIETDHNAYTEATK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	957.150406	2868.42939	2.6056	0.002494	0.077003	7.3704E-05	2.6826	0.0025677	957.484552709934	12.813	0.14189	12.813	12.751	12.893	0	225	82	1.17390432875292	0.0537988442940078	1.17390432875292	708.651192903953	0	32.4767651434626						973	17	5	NaN	NaN	NaN	0.00062842	1	38032	25.053	24.929	1	251740			6687	1841	5692	5841	6687	6687		
FVINYDYPNSSEDYIHR	17	Unmodified	_FVINYDYPNSSEDYIHR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.328838	2130.96468	1.1124	0.00079129	0.27948	0.0001988	1.3919	0.00099009	711.663273734409	11.784	0.23945	11.784	11.704	11.944	0	549	61	0.957085760909907	0.0404405239988286	0.957085760909907	578.727991297952	0	24.4534650673606						1419	28	5	NaN	NaN	NaN	4.8698E-14	1	33747	94.507	91.002	1	650830			6688	743	5693	5842	6688	6688		
FVINYDYPNSSEDYIHR	17	Unmodified	_FVINYDYPNSSEDYIHR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.48962	2130.96468	0.75924	0.00080972	0.75167	0.00080165	1.5109	0.0016114	1066.99138256185	11.802	0.14188	11.802	11.722	11.864	0	105	82	1.25339330680955	0.0535484215609205	1.25339330680955	505.267160929238	0	21.586407704058						739	17	3	NaN	NaN	NaN	3.855E-07	1	33748	80.815	77.921	1	147680			6689	743	5693	5842	6689	6689		
FVINYDYPNSSEDYVHR	17	Unmodified	_FVINYDYPNSSEDYVHR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.656954	2116.94903	1.6905	0.0011946	0.54185	0.0003829	2.2324	0.0015775	706.991692157	11.083	0.20396	11.083	11.012	11.216	0	558	55	0.951016745717027	0.0364115845953142	0.951016745717027	575.082824946509	0	22.0182000202999						1129	24	5	NaN	NaN	NaN	4.078E-05	1	33573	67.887	62.272	1	415700			6690	2435	5694	5843	6690	6690		
FVLCPECENPETDLHVNPK	19	Unmodified	_FVLCPECENPETDLHVNPK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.689161	2297.04565	1.8009	0.0013807	1.2946	0.00099257	3.0955	0.0023733	767.02465365276	11.243	0.16848	11.243	11.154	11.323	0	471	46	1.00957851518677	0.0302403378372377	1.00957851518677	610.183518449118	0	18.2770883720739						784	20	6	NaN	NaN	NaN	0.020921	1	35608	62.398	60.427	1	255470			6691	1261	5695	5844	6691	6691		
FVLDHEDGLNLNEDLENFLQK	21	Unmodified	_FVLDHEDGLNLNEDLENFLQK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.743088	2501.20743	0.71333	0.00059544	-1.6215	-0.0013536	-0.90821	-0.00075812	835.076321025184	18.745	0.070921	18.745	18.718	18.789	0	528	37	0.971237000454584	0.0242542357032265	0.971237000454584	586.72213609862	0	14.6519304501126						260	9	4	NaN	NaN	NaN	3.5858E-11	1	36832	124.62	117.94	1	57700			6692	1782	5696	5845	6692	6692		
FVLHAVQLVK	10	Unmodified	_FVLHAVQLVK_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.358234	1152.70191	0.32153	0.00018564	0.43499	0.00025114	0.75652	0.00043678	577.358568983307	10.25	0.062079	10.25	10.223	10.285	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	397.76218170725	0	6.54758610128084						115	8	3	NaN	NaN	NaN	0.0019424	1	8150	75.243	72.389	1	23723			6693	883	5697	5846	6693	6693		
FVLINWTGEGVNDVR	15	Unmodified	_FVLINWTGEGVNDVR_			0	0	0	Q9UJU6	Q9UJU6	Q9UJU6	DBNL	Drebrin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.946661	1717.87877	1.8447	0.0015864	-1.9361	-0.0016649	-0.091379	-7.8581E-05	859.945036265673	16.058	0.097538	16.058	16.032	16.129	0	375	55	1.07392668217569	0.0361060601880221	1.07392668217569	433.594120719442	0	14.5776948088786						364	12	3	NaN	NaN	NaN	3.7664E-08	1	24994	126.21	118.21	1	112840			6694	3249	5698	5847	6694	6694		
FVLNLIK	7	Unmodified	_FVLNLIK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.776014	845.537475	-2.4943	-0.001057	-1.4635	-0.00062019	-3.9578	-0.0016772	423.775387704036	13.655	0.097523	13.655	13.611	13.708	0	792	34	0.792332785124922	0.0225046954516063	0.792332785124922	322.529267037873	0	9.16082618968335						198	12	3	NaN	NaN	NaN	0.028352	1	1503	56.89	39.196	1	49014			6695	2348	5699	5848	6695	6695		
FVLPLQDHTIK	11	Unmodified	_FVLPLQDHTIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.587084	1309.73942	-2.4123	-0.0010556	-0.3722	-0.00016287	-2.7845	-0.0012185	437.586408939039	10.906	0.07095	10.906	10.888	10.959	0	855	19	0.749315378969369	0.0123086780485644	0.749315378969369	454.926569153621	0	7.47288102260978						108	9	3	NaN	NaN	NaN	0.0042663	1	12655	52.591	43.077	1	21700			6696	1240	5700	5849	6696	6696		
FVLPLQDHTIK	11	Unmodified	_FVLPLQDHTIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.587084	1309.73942	-2.0945	-0.00091653	0.83508	0.00036542	-1.2594	-0.00055111	437.587632126097	10.906	0.088668	10.906	10.871	10.959	0	762	34	0.812773098473386	0.0224733988875652	0.812773098473386	493.453201286328	0	13.6441162308188						196	11	3	NaN	NaN	NaN	0.054785	1	12656	13.995	12.195	1	46891			6697	1240	5700	5849	6697	6697		
FVLPLQDHTIK	11	Unmodified	_FVLPLQDHTIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.876988	1309.73942	1.4966	0.00098157	-0.48484	-0.000318	1.0117	0.00066357	655.8766087242	10.915	0.079801	10.915	10.879	10.959	0	459	28	1.01763759082241	0.0181266605748145	1.01763759082241	411.890733945135	0	7.33680005089127						114	10	2	NaN	NaN	NaN	0.052297	1	12658	30.918	24.228	1	27376			6698	1240	5700	5849	6698	6698		
FVLQDGAHHMVDSNEISFIR	20	Unmodified	_FVLQDGAHHMVDSNEISFIR_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.379427	2314.11645	1.8067	0.0013954	-0.55763	-0.0004307	1.249	0.00096473	772.71294996016	12.822	0.088681	12.822	12.786	12.875	0	486	46	0.999498404980629	0.0302486975418772	0.999498404980629	604.064387458635	0	18.2813307765206						344	11	4	NaN	NaN	NaN	1.9869E-08	1	35762	74.643	64.732	1	82399			6699	2612	5701	5850	6699	6699		
FVLSGANIMCPGLTSPGAK	19	Unmodified	_FVLSGANIMCPGLTSPGAK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.489521	1918.96449	1.2032	0.0011556	0.95445	0.00091674	2.1576	0.0020724	960.491022582963	14.764	0.18624	14.764	14.693	14.879	0	225	73	1.17390432875292	0.0478310427337734	1.17390432875292	473.56199271123	0	19.2954087958126						1114	22	5	NaN	NaN	NaN	1.1503E-10	1	30041	100.56	92.184	1	352360			6700	3276	5702	5851	6700	6700		
FVLSGANIMCPGLTSPGAK	19	Oxidation (M)	_FVLSGANIM(Oxidation (M))CPGLTSPGAK_	FVLSGANIM(1)CPGLTSPGAK	FVLSGANIM(55)CPGLTSPGAK	0	1	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.486979	1934.9594	2.581	0.0024997	-1.8792	-0.0018199	0.70189	0.00067977	968.485632829415	12.777	0.097559	12.777	12.724	12.822	0	249	52	1.15795408347545	0.0339012683335864	1.15795408347545	467.099828638118	0	13.6752198167526						406	12	5	NaN	NaN	NaN	2.4552E-06	1	30421	54.912	38.153	1	84197			6701	3276	5702	5852	6701	6701	641	
FVLSSGK	7	Unmodified	_FVLSSGK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	369.213246	736.41194	-0.41749	-0.00015414	-1.1215	-0.00041408	-1.539	-0.00056823	369.212841585262	4.8755	0.15071	4.8755	4.8312	4.9819	0	858	25	0.747263789720611	0.0164138593220675	0.747263789720611	304.901623636639	0	6.69724992202941						195	18	3	NaN	NaN	NaN	0.036857	1	528	58.687	11.885	1	44728			6702	868	5703	5853	6702	6702		
FVMQEEFSR	9	Unmodified	_FVMQEEFSR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.773874	1171.53319	1.0189	0.00059784	1.8518	0.0010866	2.8706	0.0016844	586.775210241212	9.2656	0.28386	9.2656	9.2036	9.4874	0	600	49	0.922661313351899	0.0324376543962731	0.922661313351899	373.908409101507	0	13.1453563455838						939	33	5	NaN	NaN	NaN	0.00083747	1	8641	106.93	99.28	1	629400			6703	904	5704	5854	6703	6703		
FVNLFPEVKPTIQDVLR	17	Unmodified	_FVNLFPEVKPTIQDVLR_			0	0	1	O94973	O94973	O94973	AP2A2	AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.382326	2014.12515	-1.1754	-0.00079034	0.75715	0.00050909	-0.41829	-0.00028125	672.71702271494	17.628	0.14184	17.628	17.539	17.681	0	699	19	0.85560534332665	0.0122199368605512	0.85560534332665	517.559199230048	0	7.39189018104821						105	17	2	NaN	NaN	NaN	0.0012066	1	31880	30.875	23.668	1	23035			6704	399	5705	5855	6704	6704		
FVNLGIEPPK	10	Unmodified	_FVNLGIEPPK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.318774	1112.623	0.04487	2.5007E-05	-1.6176	-0.00090153	-1.5727	-0.00087652	557.318003320109	11.474	0.31055	11.474	11.27	11.58	0	672	37	0.873923798053065	0.0244161317005186	0.873923798053065	354.375677413023	0	9.90072959502061						573	36	3	NaN	NaN	NaN	0.00058548	1	7063	63.397	42.309	1	170790			6705	981	5706	5856	6705	6705		
FVNVVPTFGK	10	Unmodified	_FVNVVPTFGK_			0	0	0	P62861	P62861	P62861	FAU	40S ribosomal protein S30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.313492	1106.61243	0.50232	0.00027844	-0.5711	-0.00031657	-0.068778	-3.8124E-05	554.313307394718	12.263	0.28378	12.263	12.157	12.44	0	630	85	0.902373728295776	0.0568999007381249	0.902373728295776	365.936422933112	0	23.0744152765645						1997	33	5	NaN	NaN	NaN	1.1929E-05	1	6904	105.36	93.291	1	2029800			6706	1407	5707	5857	6706	6706		
FVPAEMGTHTVSVK	14	Unmodified	_FVPAEMGTHTVSVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.59391	1501.7599	0.21019	0.00010543	0.42258	0.00021196	0.63277	0.00031739	501.594574683525	7.19	0.1596	7.19	7.1457	7.3053	0	702	49	0.853568545818287	0.0326000897704161	0.853568545818287	517.52976835134	0	19.7658606210028						456	19	5	NaN	NaN	NaN	0.040722	1	18576	36.952	32.123	1	163970			6707	792	5708	5858	6707	6707		
FVPAEMGTHTVSVK	14	Unmodified	_FVPAEMGTHTVSVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.887226	1501.7599	2.1967	0.0016517	0.73003	0.0005489	2.9267	0.0022006	752.390930239928	7.19	0.18622	7.19	7.1102	7.2964	0	369	124	1.07793901817685	0.0824063416846788	1.07793901817685	435.715011746783	0	33.30956531834						622	22	5	NaN	NaN	NaN	0.0020647	1	18578	74.524	68.658	1	230340			6708	792	5708	5858	6708	6708		
FVPFAAVAAANCINIPLMR	19	Unmodified	_FVPFAAVAAANCINIPLMR_			0	0	0	Q9BWM7;Q9H9B4	Q9BWM7;Q9H9B4	Q9H9B4	SFXN3;SFXN1	Sideroflexin-3;Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.05008	2074.08561	0.65767	0.0006827	-0.027112	-2.8143E-05	0.63056	0.00065456	1038.55194450777	19.658	0.044342	19.658	19.641	19.685	0	147	31	1.22562176648663	0.0198558605282475	1.22562176648663	494.159644715801	0	8.00570392307264						112	6	3	NaN	NaN	NaN	0.00079779	1	32938	58.476	51.954	1	20229			6709	2781;2933	5709	5859	6709	6709		
FVPQEMGVHTVSVK	14	Unmodified	_FVPQEMGVHTVSVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.941309	1556.8021	0.031838	1.6554E-05	-1.162	-0.00060416	-1.1301	-0.00058761	519.940852539889	8.1124	0.1418	8.1124	8.077	8.2188	0	726	28	0.837263974740672	0.0183541170899648	0.837263974740672	507.480381080819	0	11.1247523077799						316	17	4	NaN	NaN	NaN	0.040215	1	20268	35.845	31.291	1	79323			6710	326	5710	5860	6710	6710		
FVPQEMGVHTVSVK	14	Unmodified	_FVPQEMGVHTVSVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.408326	1556.8021	2.6928	0.0020988	-0.10195	-7.9458E-05	2.5909	0.0020193	779.408485443648	8.1213	0.15083	8.1213	8.068	8.2188	0	345	34	1.09397730668811	0.0220420155259144	1.09397730668811	442.055071904133	0	8.90675217726255						274	18	2	NaN	NaN	NaN	0.0043894	1	20269	41.317	39.333	1	110160			6711	326	5710	5860	6711	6711		
FVPYLIAGIQHGCQDIGAR	19	Unmodified	_FVPYLIAGIQHGCQDIGAR_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.698319	2114.07313	0.74294	0.00052429	0.4333	0.00030578	1.1762	0.00083007	706.032857485185	14.063	0.070921	14.063	14.019	14.09	0	531	25	0.969216233931596	0.0161694889209075	0.969216233931596	586.093304854642	0	9.77782755559394						118	9	2	NaN	NaN	NaN	0.010275	1	33530	27.669	24.584	1	37511			6712	786	5711	5861	6712	6712		
FVPYLIAGIQHSCQDIGAK	19	Unmodified	_FVPYLIAGIQHSCQDIGAK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.366458	2116.07755	0.95135	0.000672	-0.92188	-0.00065118	0.029474	2.082E-05	706.700252335475	14.028	0.17734	14.028	13.957	14.134	0	546	121	0.959108205975751	0.0810156574378835	0.959108205975751	579.977317352598	0	48.990555363436						890	21	6	NaN	NaN	NaN	3.8465E-05	1	33566	82.437	77.049	1	321950			6713	666	5712	5862	6713	6713		
FVPYLIAGIQHSCQDIGAK	19	Unmodified	_FVPYLIAGIQHSCQDIGAK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.04605	2116.07755	0.35483	0.00037578	-0.037442	-3.9653E-05	0.31738	0.00033612	1059.54789613211	14.036	0.11527	14.036	13.983	14.099	0	60	52	1.28308947459206	0.033637231231026	1.28308947459206	517.261827939288	0	13.5604383466						469	14	4	NaN	NaN	NaN	2.43E-10	1	33567	130.78	129.31	1	104620			6714	666	5712	5862	6714	6714		
FVPYYDLFMPSLK	13	Unmodified	_FVPYYDLFMPSLK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.412546	1618.81054	1.4327	0.0011611	-0.56373	-0.00045685	0.86901	0.00070425	810.412150906349	19.109	0.19506	19.109	19.02	19.215	0	360	64	1.08395544855938	0.0421034272006935	1.08395544855938	437.857498890969	0	17.0074345337115						665	23	5	NaN	NaN	NaN	0.0035228	1	22158	47.361	0	1	255850			6715	74	5713	5863	6715	6715		
FVQAVIPTIEYDYTR	15	Unmodified	_FVQAVIPTIEYDYTR_			0	0	0	Q9NT62	Q9NT62	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.969802	1813.92505	1.8093	0.0016428	1.1199	0.0010168	2.9292	0.0026596	908.472633066101	15.154	0.21282	15.154	15.03	15.242	-1.7764E-15	258	67	1.15196821829984	0.0439235387907617	1.15196821829984	464.905936542788	0	17.7264560023456						1007	25	5	NaN	NaN	NaN	0.0075261	1	27579	39.702	36.987	1	314810			6716	3040	5714	5864	6716	6716		
FVQCPDGELQK	11	Unmodified	_FVQCPDGELQK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.81627	1319.61799	2.2083	0.0014593	-0.97042	-0.00064127	1.2379	0.00081802	660.816211911626	5.6026	0.29266	5.6026	5.443	5.7357	0	537	73	0.965173861991602	0.0485152092692018	0.965173861991602	390.625414537222	0	19.6350880172375						1008	34	4	NaN	NaN	NaN	0.00060691	1	12952	88.181	77.479	1	440870			6717	3325	5715	5865	6717	6717		
FVSEDDRNSFTLK	13	Unmodified	_FVSEDDRNSFTLK_			0	0	1	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.38082	1556.74709	2.5463	0.0019845	2.6452	0.0020616	5.1914	0.0040461	779.885684869116	7.4383	0.46108	7.4383	7.1634	7.6245	0	372	103	1.07593298845566	0.0682945113835656	1.07593298845566	434.763836782179	0	27.5964991489864						1017	53	5	NaN	NaN	NaN	0.0090899	1	20259	84.999	66.492	1	474970			6718	955	5716	5866	6718	6718		
FVSELWK	7	Unmodified	_FVSELWK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.747453	907.480354	-1.2599	-0.00057296	-1.9129	-0.00086989	-3.1728	-0.0014428	454.746705533383	10.534	0.1596	10.534	10.498	10.658	0	822	28	0.771863999559055	0.0184334553037235	0.771863999559055	313.854672541059	0	7.49539566744335						187	19	3	NaN	NaN	NaN	0.0086281	1	2462	69.093	38.035	1	52063			6719	972	5717	5867	6719	6719		
FVSGVLSDQMSAR	13	Unmodified	_FVSGVLSDQMSAR_			0	0	0	O43826	O43826	O43826	SLC37A4	Glucose-6-phosphate translocase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.848101	1395.68165	1.4157	0.00098935	2.0454	0.0014294	3.461	0.0024187	698.84999629356	9.6824	0.11528	9.6824	9.6026	9.7179	0	471	31	1.00957851518677	0.0201504747888646	1.00957851518677	408.366031780047	0	8.15069784492209						134	14	2	NaN	NaN	NaN	0.0049995	1	15315	33.1	30.799	1	27055			6720	238	5718	5868	6720	6720		
FVSISDLLVPK	11	Unmodified	_FVSISDLLVPK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.360639	1216.70673	0.081774	4.983E-05	-0.34887	-0.00021259	-0.26709	-0.00016276	609.360672591549	17.282	0.39016	17.282	17.184	17.575	0	591	70	0.928742107665821	0.0466000786079988	0.928742107665821	376.2099997346	0	18.8765163289611						1605	45	5	NaN	NaN	NaN	2.0494E-07	1	9936	123.5	90.108	1	2566000			6721	1161	5719	5869	6721	6721		
FVSSHQGFSGILK	13	Unmodified	_FVSSHQGFSGILK_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.585743	1405.7354	-1.5551	-0.00073023	-1.3516	-0.00063467	-2.9066	-0.0013649	469.585683092496	8.485	0.15075	8.485	8.4051	8.5559	0	801	43	0.78619514174348	0.0286483242431282	0.78619514174348	476.977218431101	0	17.3806696132676						312	18	3	NaN	NaN	NaN	0.0039148	1	15650	47.334	33.34	1	123520			6722	2601	5720	5870	6722	6722		
FVSSHQGFSGILK	13	Unmodified	_FVSSHQGFSGILK_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.874976	1405.7354	1.6553	0.0011651	3.5081	0.0024693	5.1634	0.0036344	703.877372282232	8.5027	0.11528	8.5027	8.4495	8.5648	0	459	55	1.01763759082241	0.0362408161088767	1.01763759082241	411.596972522392	0	14.6580770273035						210	14	2	NaN	NaN	NaN	0.04996	1	15652	24.689	19.86	1	64163			6723	2601	5720	5870	6723	6723		
FVSSLLTALFR	11	Unmodified	_FVSSLLTALFR_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.366256	1252.71796	0.46486	0.00029164	-1.7419	-0.0010928	-1.2771	-0.0008012	627.366213575332	19.756	0.053208	19.756	19.738	19.791	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	379.370265198189	0	6.56135117754837						108	7	3	NaN	NaN	NaN	0.00124	1	11004	59.645	51.999	1	25532			6724	3067	5721	5871	6724	6724		
FVTDIDELGK	10	Unmodified	_FVTDIDELGK_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.795329	1135.5761	1.2998	0.00073932	-1.5877	-0.00090309	-0.28793	-0.00016377	568.795004864606	10.897	0.16849	10.897	10.835	11.004	0	615	52	0.912521036363781	0.0344769526882287	0.912521036363781	369.93530834237	0	13.9769294242775						408	20	4	NaN	NaN	NaN	0.0062875	1	7686	52.591	37.009	1	104860			6725	1500	5722	5872	6725	6725		
FVTETLEDGSR	11	Unmodified	_FVTETLEDGSR_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.304049	1252.59355	1.4406	0.00090367	-3.121	-0.0019578	-1.6805	-0.0010542	627.302226232492	7.1989	0.21281	7.1989	7.1014	7.3142	0	579	34	0.936845902828289	0.0222838959578864	0.936845902828289	379.370681697361	0	9.02374315230998						304	22	3	NaN	NaN	NaN	0.00124	1	10979	51.872	26.619	1	69776			6726	3102	5723	5873	6726	6726		
FVTHVSDWGALATISTLEAVR	21	Unmodified	_FVTHVSDWGALATISTLEAVR_			0	0	0	O75629	O75629	O75629	CREG1	Protein CREG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.402337	2272.18518	-0.16494	-0.00012509	-0.014384	-1.0909E-05	-0.17932	-0.000136	758.736944034374	18	0.10642	18	17.965	18.071	0	600	34	0.922661313351899	0.022302429094845	0.922661313351899	557.687918384283	0	13.4803476387585						307	13	5	NaN	NaN	NaN	0.00055513	1	35390	61.23	59.382	1	81871			6727	349	5724	5874	6727	6727		
FVTSTSDHFVEGQTVAAK	18	Unmodified	_FVTSTSDHFVEGQTVAAK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.47598	1922.93741	2.3323	0.0022448	-1.0892	-0.0010484	1.2431	0.0011965	962.976496876354	7.2255	0.053193	7.2255	7.1989	7.2521	0	189	46	1.1977968526266	0.0298472092249094	1.1977968526266	483.19325969527	0	12.0404142710555						220	7	3	NaN	NaN	NaN	7.72E-05	1	30115	53.363	51.994	1	50557			6728	1766	5725	5875	6728	6728		
FVTSTSDHFVEGQTVAAK	18	Unmodified	_FVTSTSDHFVEGQTVAAK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.986412	1922.93741	1.3859	0.00088976	0.04488	2.8812E-05	1.4308	0.00091857	642.320713582285	7.2255	0.1064	7.2255	7.19	7.2964	0	597	40	0.924688525662974	0.0263610708448411	0.924688525662974	559.529250337265	0	15.9510903385832						296	13	4	NaN	NaN	NaN	3.0279E-07	1	30116	85.081	81.996	1	91084			6729	1766	5725	5875	6729	6729		
FVVDLSDQVAPTDIEEGMR	19	Unmodified	_FVVDLSDQVAPTDIEEGMR_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.01207	2120.00958	0.7065	0.0007496	-2.7118	-0.0028772	-2.0053	-0.0021276	1061.51100403665	15.677	0.24827	15.677	15.571	15.819	0	162	97	1.21569043230068	0.0635388227068876	1.21569043230068	490.084809997469	0	25.6145898876877						1643	29	5	NaN	NaN	NaN	3.329E-07	1	33614	94.63	86.217	1	487640			6730	981	5726	5876	6730	6730		
FVVDLSDQVAPTDIEEGMR	19	Oxidation (M)	_FVVDLSDQVAPTDIEEGM(Oxidation (M))R_	FVVDLSDQVAPTDIEEGM(1)R	FVVDLSDQVAPTDIEEGM(41)R	0	1	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.00953	2136.0045	1.2261	0.0013107	0.36626	0.00039154	1.5924	0.0017023	1069.51192835369	14.196	0.079801	14.196	14.152	14.232	0	153	61	1.22165005014568	0.0396954012636659	1.22165005014568	492.463315144192	0	16.0017419881846						296	10	3	NaN	NaN	NaN	0.00024231	1	33826	40.53	34.627	1	50775			6731	981	5726	5877	6731	6731	355	
FVVMVTPEDLK	11	Unmodified	_FVVMVTPEDLK_			0	0	0	Q13085;O00763	Q13085	Q13085	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.344132	1276.67371	0.73837	0.00047207	-0.43142	-0.00027583	0.30695	0.00019624	639.343698956247	13.682	0.11527	13.682	13.611	13.726	0	528	64	0.971237000454584	0.0424185110568702	0.971237000454584	393.216268594406	0	17.1736132677257						376	14	3	NaN	NaN	NaN	0.0050632	1	11677	50.834	40.047	1	68947			6732	1625	5727	5878	6732	6732		
FVVSSLQGEDCR	12	Unmodified	_FVVSSLQGEDCR_			0	0	0	Q9GZQ3	Q9GZQ3	Q9GZQ3	COMMD5	COMM domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.829908	1395.64526	1.1823	0.00082621	1.5758	0.0011012	2.7581	0.0019274	698.830114950535	8.1213	0.088783	8.1213	8.0414	8.1302	0	495	25	0.993446994398923	0.0161426739918176	0.993446994398923	401.841071708866	0	6.52957777686322						85	11	3	NaN	NaN	NaN	0.013243	1	15308	40.386	21.13	1	22250			6733	2828	5728	5879	6733	6733		
FWDFELVK	8	Unmodified	_FWDFELVK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.279118	1082.54368	0.36129	0.00019592	-1.2166	-0.00065976	-0.85535	-0.00046384	542.278362845646	16.138	0.14189	16.138	16.094	16.236	0	609	64	0.916577990479294	0.0426187151879737	0.916577990479294	371.798265003764	0	17.2877425905593						431	17	4	NaN	NaN	NaN	0.0081591	1	6270	67.903	55.836	1	153320			6734	3308	5729	5880	6734	6734		
FWESPETVSQLDSVR	15	Unmodified	_FWESPETVSQLDSVR_			0	0	0	Q92922	Q92922	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.431041	1778.84753	1.9795	0.0017626	-1.9425	-0.0017297	0.036981	3.2929E-05	890.429142575824	13.052	0.15073	13.052	12.963	13.114	0	315	31	1.11400032671325	0.0200119941897818	1.11400032671325	449.650304124805	0	8.0775553272307						366	18	3	NaN	NaN	NaN	2.7253E-06	1	26643	104.04	90.264	1	140210			6735	2445	5730	5881	6735	6735		
FWETLDR	7	Unmodified	_FWETLDR_			0	0	0	Q6P1J9	Q6P1J9	Q6P1J9	CDC73	Parafibromin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.737617	965.460681	-0.55516	-0.00026855	0.96143	0.00046508	0.40628	0.00019653	483.738029479661	9.5228	0.14187	9.5228	9.4608	9.6026	0	714	31	0.845418525735192	0.0203778832072955	0.845418525735192	343.455403376858	0	8.27861453691446						265	17	3	NaN	NaN	NaN	0.0011726	1	3545	109.11	79.797	1	82975			6736	2056	5731	5882	6736	6736		
FWEVISDEHGIDPAGGYVGDSALQLER	27	Unmodified	_FWEVISDEHGIDPAGGYVGDSALQLER_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	987.473548	2959.39882	0.79973	0.00078971	0.56114	0.00055411	1.3609	0.0013438	987.808552143654	16.369	0.062052	16.369	16.333	16.395	0	372	55	1.07593298845566	0.0361259765549562	1.07593298845566	649.412444667825	0	21.8049441761618						279	8	4	NaN	NaN	NaN	2.1008E-10	1	38158	73.012	72.325	1	50597			6737	2745	5732	5883	6737	6737		
FWEVISDEHGIDPTGTYHGDSDLQLDR	27	Unmodified	_FWEVISDEHGIDPTGTYHGDSDLQLDR_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1034.80737	3101.40027	2.342	0.0024235	0.77835	0.00080544	3.1203	0.0032289	1035.14252796464	14.099	0.12413	14.099	14.054	14.178	0	339	73	1.09798411722691	0.0480751360570641	1.09798411722691	662.580079973104	0	29.0110093521729						968	15	6	NaN	NaN	NaN	2.6047E-06	1	38362	37.997	19.013	1	312140			6738	560	5733	5884	6738	6738		
FWEVISDEHGIDPTGTYHGDSDLQLDR	27	Unmodified	_FWEVISDEHGIDPTGTYHGDSDLQLDR_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	776.357345	3101.40027	1.9597	0.0015214	1.3501	0.0010481	3.3097	0.0025695	776.609407974668	14.099	0.42559	14.099	14.01	14.435	0	426	70	1.03977710643793	0.0462789558811585	1.03977710643793	836.605419637977	0	37.2360817194769						2243	49	8	NaN	NaN	NaN	2.4632E-27	1	38363	159.44	50.018	1	2053600			6739	560	5733	5884	6739	6739		
FWEVISDEHGIDPTGTYHGDSDLQLER	27	Unmodified	_FWEVISDEHGIDPTGTYHGDSDLQLER_			0	0	0	P04350;P68371	P04350;P68371	P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1039.47925	3115.41592	1.9592	0.0020366	0.77588	0.00080651	2.7351	0.0028431	1039.81447262411	14.036	0.088673	14.036	14.001	14.09	0	321	64	1.10999792833052	0.0420512546798575	1.10999792833052	669.816369756154	0	25.3753795700476						671	11	5	NaN	NaN	NaN	0.023415	1	38378	9.5402	9.527	1	169370			6740	1449;512	5734	5885	6740	6740		
FWEVISDEHGIDPTGTYHGDSDLQLER	27	Unmodified	_FWEVISDEHGIDPTGTYHGDSDLQLER_			0	0	0	P04350;P68371	P04350;P68371	P68371	TUBB4A;TUBB4B	Tubulin beta-4A chain;Tubulin beta-4B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	779.861257	3115.41592	1.7613	0.0013735	1.1524	0.00089874	2.9137	0.0022723	780.112982186469	14.036	0.31921	14.036	13.966	14.285	0	426	73	1.03977710643793	0.0482877537659205	1.03977710643793	836.588617853719	0	38.8515816824282						2016	37	7	NaN	NaN	NaN	0.00037257	1	38379	85.443	56.779	1	1061200			6741	1449;512	5734	5885	6741	6741		
FWQTYSSAEEVLQK	14	Unmodified	_FWQTYSSAEEVLQK_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.417402	1714.82025	2.4159	0.0020739	-5.7865	-0.0049672	-3.3706	-0.0028933	858.412114503115	12.635	0.14183	12.635	12.538	12.68	0	339	37	1.09798411722691	0.0240375557134762	1.09798411722691	443.31356773597	0	9.70521742145661						327	17	4	NaN	NaN	NaN	2.9186E-05	1	24897	69.276	56.68	1	95243			6742	3	5735	5886	6742	6742		
FWSLQDYFR	9	Unmodified	_FWSLQDYFR_			0	0	0	Q96FV9	Q96FV9	Q96FV9	THOC1	THO complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.303655	1260.59276	0.14355	9.0622E-05	1.1151	0.00070399	1.2587	0.00079462	631.30422504321	17.468	0.08868	17.468	17.442	17.53	0	564	25	0.946969335010767	0.0161918857668037	0.946969335010767	383.443561541751	0	6.55636261593395						133	11	2	NaN	NaN	NaN	8.7223E-05	1	11221	98.009	90.362	1	39891			6743	2528	5736	5887	6743	6743		
FWSVDDTQVHTEYSSLR	17	Unmodified	_FWSVDDTQVHTEYSSLR_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.656954	2068.94903	-0.04692	-3.2405E-05	-0.44435	-0.0003069	-0.49127	-0.0003393	690.99083936441	11.589	0.11533	11.589	11.545	11.66	0	651	49	0.888155670855968	0.0325096976674552	0.888155670855968	537.151664397462	0	19.6616863283685						513	14	5	NaN	NaN	NaN	2.5196E-10	1	32856	87.573	75.893	1	212980			6744	939	5737	5888	6744	6744		
FWSVDDTQVHTEYSSLR	17	Unmodified	_FWSVDDTQVHTEYSSLR_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.48179	2068.94903	1.3692	0.0014178	0.61213	0.00063384	1.9813	0.0020516	1035.98394053538	11.589	0.071005	11.589	11.562	11.633	0	162	52	1.21569043230068	0.0337850812136038	1.21569043230068	490.163511017283	0	13.6220649498114						317	9	4	NaN	NaN	NaN	0.0020561	1	32858	39.166	38.599	1	59205			6745	939	5737	5888	6745	6745		
FWTFETGCTVCDEGLR	16	Unmodified	_FWTFETGCTVCDEGLR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.427118	1976.83968	1.6756	0.0016579	0.66106	0.00065407	2.3367	0.002312	989.929166381777	14.613	0.07981	14.613	14.586	14.666	0	246	40	1.1599488233373	0.0259280591275983	1.1599488233373	467.83387277991	0	10.4573788698983						250	10	3	NaN	NaN	NaN	9.5006E-09	1	31225	123.92	113.9	1	51234			6746	1531	5738	5889	6746	6746		
FWVNILK	7	Unmodified	_FWVNILK_			0	0	0	O15031;O60486;Q9Y4D7	O15031	O15031	PLXNB2;PLXNC1;PLXND1	Plexin-B2;Plexin-C1;Plexin-D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.273638	918.532724	-1.959	-0.00090168	-0.32483	-0.00014951	-2.2838	-0.0010512	460.273608721354	14.826	0.088672	14.826	14.781	14.87	0	699	25	0.85560534332665	0.0162955130299774	0.85560534332665	347.843084798493	0	6.62487859026538						118	11	2	NaN	NaN	NaN	0.021427	1	2678	67.889	52.39	1	30967			6747	139	5739	5890	6747	6747		
FWYFVSQLK	9	Unmodified	_FWYFVSQLK_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.321317	1216.62808	0.096233	5.8637E-05	-0.49531	-0.0003018	-0.39908	-0.00024317	609.320929339733	15.952	0.17735	15.952	15.899	16.076	0	561	43	0.948993180460448	0.028335804573887	0.948993180460448	384.41347781946	0	11.4781279858885						560	21	4	NaN	NaN	NaN	0.00048159	1	9929	74.486	42.346	1	182560			6748	1528	5740	5891	6748	6748		
FYALSASFEPFSNK	14	Unmodified	_FYALSASFEPFSNK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.390656	1606.76676	1.958	0.001575	-3.8069	-0.0030622	-1.8489	-0.0014872	804.390082109177	15.579	0.12415	15.579	15.526	15.65	0	372	34	1.07593298845566	0.0220785024437311	1.07593298845566	434.644523484194	0	8.91905004945909						158	15	2	NaN	NaN	NaN	5.8257E-08	1	21808	166.65	154.63	1	202140			6749	868	5741	5892	6749	6749		
FYALSASFEPFSNK	14	Unmodified	_FYALSASFEPFSNK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.390656	1606.76676	2.6113	0.0021005	1.5985	0.0012858	4.2098	0.0033863	804.392160839077	15.579	0.37243	15.579	15.517	15.89	0	318	67	1.11199926528787	0.0440142863306718	1.11199926528787	449.21419233809	0	17.7804452777689						1809	43	6	NaN	NaN	NaN	2.9926E-24	1	21812	196.44	179.03	1	2047500			6750	868	5741	5892	6750	6750		
FYAPWCGHCK	10	Unmodified	_FYAPWCGHCK_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.523321	1324.54813	-1.2625	-0.00055869	-1.4989	-0.00066328	-2.7614	-0.001222	442.522678075638	7.802	0.16852	7.802	7.7398	7.9083	0	813	22	0.778007628350577	0.0143331381547551	0.778007628350577	472.291251950865	0	8.70096322557345						338	20	4	NaN	NaN	NaN	0.019142	1	13119	29.102	23.793	1	91550			6751	2294	5742	5893	6751	6751		
FYAYNPLAGGLLTGK	15	Unmodified	_FYAYNPLAGGLLTGK_			0	0	0	O43488;Q8NHP1	O43488	O43488	AKR7A2;AKR7L	Aflatoxin B1 aldehyde reductase member 2;Aflatoxin B1 aldehyde reductase member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.924666	1583.83478	1.1048	0.00087603	1.3988	0.0011092	2.5036	0.0019852	793.428652042015	16.245	0.32809	16.245	16.156	16.484	0	384	55	1.06790610341098	0.036130958221537	1.06790610341098	431.455264115448	0	14.5976243345977						733	38	4	NaN	NaN	NaN	0.00031298	1	21091	63.908	52.553	1	282000			6752	205	5743	5894	6752	6752		
FYCDYCDTYLTHDSPSVR	18	Unmodified	_FYCDYCDTYLTHDSPSVR_			0	0	0	P09234	P09234	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.985866	2297.93577	1.9695	0.0015106	0.21091	0.00016177	2.1804	0.0016723	767.320710481613	10.064	0.15075	10.064	10.019	10.17	0	498	79	0.991429299781895	0.0524782385437431	0.991429299781895	599.212845057348	0	31.7174755964064						979	18	6	NaN	NaN	NaN	1.7399E-10	1	35620	103.23	101.5	1	520030			6753	599	5744	5895	6753	6753		
FYDDAIVSQK	10	Unmodified	_FYDDAIVSQK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.292953	1184.57135	2.433	0.0014435	1.7182	0.0010194	4.1512	0.0024629	593.293584725134	7.6777	0.28385	7.6777	7.589	7.8729	0	570	64	0.942920803299286	0.0425361068960246	0.942920803299286	382.069618363045	0	17.2355452033181						669	33	4	NaN	NaN	NaN	0.00081129	1	8991	95.311	79.813	1	248370			6754	350	5745	5896	6754	6754		
FYDDLHCIDISDMK	14	Unmodified	_FYDDLHCIDISDMK_			0	0	0	Q7Z6M1	Q7Z6M1	Q7Z6M1	RABEPK	Rab9 effector protein with kelch motifs	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.260379	1770.75931	-0.78986	-0.00046701	1.1679	0.00069053	0.37805	0.00022352	591.262015393806	12.742	0.07982	12.742	12.706	12.786	0	750	34	0.820941264895493	0.0224484086173647	0.820941264895493	497.057157901876	0	13.5918885600028						190	10	4	NaN	NaN	NaN	0.0016375	1	26427	44.82	40.837	1	40201			6755	2148	5746	5897	6755	6755		
FYDLSSK	7	Unmodified	_FYDLSSK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.213443	858.412334	-1.4825	-0.00063778	0.0067126	2.8878E-06	-1.4758	-0.00063489	430.213459006335	6.1791	0.12414	6.1791	6.1259	6.25	0	783	31	0.798467866007927	0.0204460030373547	0.798467866007927	324.948811085497	0	8.32081622978285						170	15	2	NaN	NaN	NaN	0.025025	1	1683	63.301	44.347	1	62113			6756	3300	5747	5898	6756	6756		
FYEAFSK	7	Unmodified	_FYEAFSK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.215986	890.417419	-0.038944	-1.7377E-05	0.3457	0.00015426	0.30675	0.00013688	446.216266802787	6.7821	0.36369	6.7821	6.7023	7.066	-8.8818E-16	759	73	0.814815566123307	0.0490431307247485	0.814815566123307	331.414219245778	0	19.9475704125803						1353	42	5	NaN	NaN	NaN	0.0082485	1	2165	81.32	58.011	1	2519100			6757	579	5748	5899	6757	6757		
FYEEVHDLER	10	Unmodified	_FYEEVHDLER_			0	0	0	Q99733;P55209	Q99733;P55209	P55209	NAP1L4;NAP1L1	Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.210453	1335.60953	-0.28728	-0.00012819	3.669	0.0016371	3.3817	0.001509	446.212753390718	6.9417	0.41682	6.9417	6.8885	7.3053	0	756	40	0.816857749704129	0.026548391943247	0.816857749704129	495.832937861308	0	16.1148831329342						619	48	4	NaN	NaN	NaN	0.0036602	1	13451	55.235	50.695	1	507560			6758	2670;1269	5749	5900	6758	6758		
FYEEVHDLERK	11	Unmodified	_FYEEVHDLERK_			0	0	1	Q99733;P55209	Q99733;P55209	P55209	NAP1L4;NAP1L1	Nucleosome assembly protein 1-like 4;Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.908774	1463.70449	-0.77168	-0.00037728	1.0947	0.0005352	0.323	0.00015792	488.909477531717	5.6203	0.06211	5.6203	5.5937	5.6559	0	801	16	0.78619514174348	0.0102322545412836	0.78619514174348	476.79339387093	0	6.20542039838966						105	8	3	NaN	NaN	NaN	0.06483	1	17384	24.821	21.213	1	25309			6759	2670;1269	5750	5901	6759	6759		
FYEQFSK	7	Unmodified	_FYEQFSK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.726718	947.438883	0.72072	0.00034215	0.74684	0.00035455	1.4676	0.00069669	474.727038222764	5.9751	0.45236	5.9751	5.8687	6.321	0	729	64	0.835224628594324	0.0428322448532643	0.835224628594324	339.404692133449	0	17.4054552273836						1383	52	4	NaN	NaN	NaN	0.0070426	1	3189	100.75	71.445	1	1546400			6760	567	5751	5902	6760	6760		
FYEQFSKNIK	10	Unmodified	_FYEQFSKNIK_			0	0	1	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.337695	1302.66084	1.949	0.0012714	0.76311	0.00049781	2.7121	0.0017692	652.338224592068	7.3585	0.10636	7.3585	7.3231	7.4294	0	450	28	1.02367897599655	0.0181216541002778	1.02367897599655	414.359491801432	0	7.33518960500544						171	13	3	NaN	NaN	NaN	0.022331	1	12432	54.436	26.7	1	40312			6761	567	5752	5903	6761	6761		
FYFEELGK	8	Unmodified	_FYFEELGK_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.755475	1031.4964	-0.15957	-8.2461E-05	-0.079835	-4.1255E-05	-0.23941	-0.00012372	516.755375479269	12.015	0.20395	12.015	11.953	12.157	0	633	31	0.900343422309015	0.0203016545312636	0.900343422309015	365.43993912746	0	8.24022835315992						380	24	3	NaN	NaN	NaN	0.010865	1	5030	60.709	40.05	1	112430			6762	1586	5753	5904	6762	6762		
FYFHDGVR	8	Unmodified	_FYFHDGVR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.751059	1039.48756	1.103	0.00057441	1.3351	0.00069525	2.4381	0.0012697	520.751429294978	6.2323	0.25718	6.2323	6.1879	6.4451	0	651	55	0.888155670855968	0.0365937172301484	0.888155670855968	360.456553653251	0	14.8515014101395						552	30	5	NaN	NaN	NaN	0.0055224	1	5211	70.67	41.359	1	204390			6763	74	5754	5905	6763	6763		
FYFHLGDAMQR	11	Unmodified	_FYFHLGDAMQR_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.220407	1383.63939	-2.036	-0.00094107	-0.48716	-0.00022517	-2.5231	-0.0011662	462.220382518864	11.846	0.1419	11.846	11.802	11.944	0	816	37	0.775960037304758	0.0245728079094799	0.775960037304758	470.840797446213	0	14.9104076439031						363	17	4	NaN	NaN	NaN	0.0033017	1	14935	61.48	53.006	1	130690			6764	1596	5755	5906	6764	6764		
FYFHLGDAMQR	11	Unmodified	_FYFHLGDAMQR_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.826972	1383.63939	0.75659	0.00052419	3.8438	0.0026631	4.6004	0.0031873	692.829295228809	11.855	0.079814	11.855	11.811	11.89	0	444	25	1.02770517576159	0.0161048002118316	1.02770517576159	415.733597225548	0	6.51481249931618						191	10	4	NaN	NaN	NaN	0.0047114	1	14938	44.82	42.519	1	52806			6765	1596	5755	5906	6765	6765		
FYFLEAYNAK	10	Unmodified	_FYFLEAYNAK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.313689	1264.61282	1.1174	0.00070763	0.97317	0.00061632	2.0905	0.001324	633.314130957004	13.77	0.10637	13.77	13.735	13.841	0	480	34	1.00353128488872	0.0221793099010968	1.00353128488872	406.332435417071	0	8.98046044372404						241	13	3	NaN	NaN	NaN	4.1137E-05	1	11351	105.81	88.413	1	62501			6766	849	5756	5907	6766	6766		
FYGDEEK	7	Unmodified	_FYGDEEK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.192708	886.370863	0.46095	0.00020475	1.4063	0.00062466	1.8672	0.00082942	444.19336995952	3.173	0.66512	3.173	3.1198	3.7849	0	747	52	0.822982596624503	0.0347074776286075	0.822982596624503	334.75923421032	0	14.1177330844891						1088	76	4	NaN	NaN	NaN	0.018744	1	2088	66.087	28.479	1	676680			6767	868	5757	5908	6767	6767		
FYGELALK	8	Unmodified	_FYGELALK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.760561	939.506569	-0.4602	-0.00021664	-0.16206	-7.6292E-05	-0.62226	-0.00029294	470.760271094972	9.9573	0.15959	9.9573	9.913	10.073	0	717	34	0.84338031290707	0.0224234600075238	0.84338031290707	342.760240790543	0	9.1131728283334						357	19	3	NaN	NaN	NaN	0.067129	1	3060	24.851	14.023	1	136320			6768	1465	5758	5909	6768	6768		
FYGIPVTGVLDEETK	15	Unmodified	_FYGIPVTGVLDEETK_			0	0	0	P51511	P51511	P51511	MMP15	Matrix metalloproteinase-15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.429978	1666.8454	2.0002	0.001669	-0.38928	-0.00032483	1.6109	0.0013442	834.428991964407	15.712	0.19508	15.712	15.624	15.819	0	339	43	1.09798411722691	0.028043816728484	1.09798411722691	443.415838476916	0	11.3253664726589						358	23	3	NaN	NaN	NaN	0.0025796	1	23546	28.328	22.832	1	79010			6769	1185	5759	5910	6769	6769		
FYGPQGTPYEGGVWK	15	Unmodified	_FYGPQGTPYEGGVWK_			0	0	0	P62256	P62256	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.401555	1684.78856	2.495	0.0021043	-3.0052	-0.0025346	-0.51024	-0.00043034	843.900714533991	11.394	0.33701	11.394	11.234	11.571	0	357	49	1.08596037261705	0.0320765843324038	1.08596037261705	438.521604245792	0	12.9528439295377						1129	39	5	NaN	NaN	NaN	0.003523	1	24040	54.27	39.295	1	309710			6770	1374	5760	5911	6770	6770		
FYHDWNDK	8	Unmodified	_FYHDWNDK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.743431	1123.47231	1.3143	0.0007396	1.9649	0.0011057	3.2792	0.0018453	562.744566614609	4.7337	0.11528	4.7337	4.6627	4.778	0	633	31	0.900343422309015	0.0203044701825483	0.900343422309015	365.045663529835	0	8.23247952586928						207	14	3	NaN	NaN	NaN	0.018696	1	7352	62.88	45.41	1	56402			6771	3044	5761	5912	6771	6771		
FYHEELNAPIR	11	Unmodified	_FYHEELNAPIR_			0	0	0	Q9NZ63	Q9NZ63	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.570093	1387.68845	-0.4172	-0.0001934	0.35433	0.00016426	-0.062868	-2.9144E-05	463.569961628197	7.3674	0.088663	7.3674	7.3408	7.4294	8.8818E-16	738	28	0.829104889055312	0.018364325465562	0.829104889055312	503.073781693542	0	11.1428732144347						181	11	4	NaN	NaN	NaN	0.00052498	1	15073	72.038	56.159	1	54616			6772	3128	5762	5913	6772	6772		
FYHEELNAPIR	11	Unmodified	_FYHEELNAPIR_			0	0	0	Q9NZ63	Q9NZ63	Q9NZ63	C9orf78	Uncharacterized protein C9orf78	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.851501	1387.68845	1.7477	0.0012144	0.82162	0.0005709	2.5693	0.0017853	694.851964332277	7.3762	0.079791	7.3762	7.3496	7.4294	0	453	34	1.02166545906632	0.0221517485964946	1.02166545906632	413.278455242943	0	8.96070270326624						124	10	2	NaN	NaN	NaN	0.0054021	1	15074	57.032	51.005	1	31776			6773	3128	5762	5913	6773	6773		
FYLDSGEQVLVDVETK	16	Unmodified	_FYLDSGEQVLVDVETK_			0	0	0	P82663	P82663	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.462007	1840.90946	1.3814	0.0012729	6.697	0.006171	8.0784	0.0074439	921.467528914247	15.686	0.23056	15.686	15.659	15.89	-1.7764E-15	264	46	1.14797626962532	0.0299252192547748	1.14797626962532	463.243333773594	0	12.0757359697096						209	27	3	NaN	NaN	NaN	0.0039523	1	28256	44.045	42.335	1	54251			6774	1470	5763	5914	6774	6774		
FYLENLEQMVK	11	Unmodified	_FYLENLEQMVK_			0	0	0	Q8WTT2	Q8WTT2	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.35777	1412.70099	1.0492	0.00074214	1.7614	0.001246	2.8106	0.0019881	707.359251083497	16.253	0.088684	16.253	16.209	16.298	0	366	37	1.07994477139643	0.0240707016465822	1.07994477139643	436.776961312449	0	9.73524591286099						259	11	4	NaN	NaN	NaN	2.1955E-05	1	15849	83.358	61.314	1	65585			6775	2361	5764	5915	6775	6775		
FYLYPDITR	9	Unmodified	_FYLYPDITR_			0	0	0	P31641	P31641	P31641	SLC6A6	Sodium- and chloride-dependent taurine transporter	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.308406	1186.60226	0.5256	0.00031237	2.5854	0.0015365	3.111	0.0018489	594.309746443124	13.238	0.1152	13.238	13.203	13.318	0	579	37	0.936845902828289	0.0243046547974741	0.936845902828289	379.60059728949	0	9.84800323103622						287	14	3	NaN	NaN	NaN	0.0062155	1	9059	43.734	34.971	1	62947			6776	925	5765	5916	6776	6776		
FYMYELLK	8	Unmodified	_FYMYELLK_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.783179	1105.5518	0.57144	0.00031646	-1.4158	-0.00078404	-0.84435	-0.00046759	553.782536551056	14.427	0.10642	14.427	14.382	14.489	1.7764E-15	597	31	0.924688525662974	0.0202707209833614	0.924688525662974	374.99009265056	0	8.22041079637535						266	13	4	NaN	NaN	NaN	0.011762	1	6863	65.313	0	1	91612			6777	772	5766	5917	6777	6777		
FYMYELLK	8	Unmodified	_FYMYELLK_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.783179	1105.5518	0.27571	0.00015268	0.31353	0.00017363	0.58923	0.00032631	553.783304470347	15.083	0.11525	15.083	15.038	15.154	0	591	31	0.928742107665821	0.0202651042983174	0.928742107665821	376.633938789021	0	8.21813287978097						214	14	3	NaN	NaN	NaN	0.050075	1	6866	42.835	0	1	60375			6778	772	5766	5917	6778	6778		
FYNAGLAYCHSK	12	Unmodified	_FYNAGLAYCHSK_			0	0	0	Q8TC12	Q8TC12	Q8TC12	RDH11	Retinol dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.829711	1429.64487	2.2764	0.0016295	-1.6941	-0.0012127	0.58223	0.00041678	715.828155999324	5.9573	0.062135	5.9573	5.9307	5.9929	0	384	25	1.06790610341098	0.0160581986923201	1.06790610341098	431.858381589113	0	6.49389274614236						101	8	3	NaN	NaN	NaN	0.0088922	1	16370	41.824	38.721	1	17930			6779	2340	5767	5918	6779	6779		
FYNLVLLPR	9	Unmodified	_FYNLVLLPR_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.837134	1133.65972	0.87072	0.00049443	-1.3888	-0.0007886	-0.51805	-0.00029417	567.836226259927	15.429	0.13312	15.429	15.384	15.517	0	567	85	0.944945209309785	0.056742338600892	0.944945209309785	383.087809406434	0	23.0037657009673						434	16	3	NaN	NaN	NaN	0.00013744	1	7642	105.04	92.973	1	123990			6780	1709	5768	5919	6780	6780		
FYPEDVAEELIQDITQK	17	Unmodified	_FYPEDVAEELIQDITQK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.005361	2036.99425	0.13588	9.2396E-05	-0.061439	-4.1779E-05	0.074436	5.0617E-05	680.339712385849	20.155	0.03547	20.155	20.146	20.182	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	574.005815300033	0	11.0172472615669						84	5	4	NaN	NaN	NaN	0.011608	1	32287	61.194	54.339	1	43225			6781	710	5769	5920	6781	6781		
FYPEDVAEELIQDITQK	17	Unmodified	_FYPEDVAEELIQDITQK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.5044	2036.99425	1.0884	0.0011097	0.28714	0.00029274	1.3756	0.0014024	1020.0063757355	20.155	0.03547	20.155	20.146	20.182	0	225	46	1.17390432875292	0.0298841232722196	1.17390432875292	473.364950087758	0	12.0504679765502						166	5	5	NaN	NaN	NaN	1.1433E-06	1	32288	69.327	63.299	1	59692			6782	710	5769	5920	6782	6782		
FYPEDVSEELIQDITQR	17	Unmodified	_FYPEDVSEELIQDITQR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.672382	2080.99532	0.48695	0.00033827	0.16351	0.00011359	0.65047	0.00045186	695.006896738047	19.712	0.15074	19.712	19.623	19.774	0	540	49	0.963152256458504	0.0323345110128962	0.963152256458504	582.486725891254	0	19.554980354249						395	18	5	NaN	NaN	NaN	0.010186	1	33043	52.863	45.287	1	101690			6783	846	5770	5921	6783	6783		
FYPEDVSEELIQDITQR	17	Unmodified	_FYPEDVSEELIQDITQR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.50493	2080.99532	1.3212	0.0013761	0.66813	0.00069586	1.9894	0.0020719	1042.00670600825	19.712	0.16849	19.712	19.605	19.774	0	189	46	1.1977968526266	0.0298472092249094	1.1977968526266	482.930223784432	0	12.0338598308369						500	20	4	NaN	NaN	NaN	0.003586	1	33045	50.314	41.939	1	125050			6784	846	5770	5921	6784	6784		
FYPLEIDYGQDEEAVK	16	Unmodified	_FYPLEIDYGQDEEAVK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.451639	1914.88872	2.3708	0.0022723	0.88944	0.00085249	3.2603	0.0031248	958.954018338465	14.347	0.2926	14.347	14.232	14.524	0	246	100	1.1599488233373	0.0658446009362337	1.1599488233373	467.939385341119	0	26.5626219624803						1555	34	5	NaN	NaN	NaN	5.0339E-09	1	29942	112.95	100.78	1	1021100			6785	611	5771	5922	6785	6785		
FYQAEMEELDFISAVEK	17	Unmodified	_FYQAEMEELDFISAVEK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.655563	2047.94486	-0.38345	-0.00026215	0.40807	0.00027898	0.024616	1.6829E-05	683.656645158997	18.178	0.044324	18.178	18.16	18.204	0	540	19	0.963152256458504	0.0121304730216888	0.963152256458504	582.548971760819	0	7.33694443258742						73	6	3	NaN	NaN	NaN	0.053253	1	32495	26.517	26.365	1	12168			6786	961	5772	5923	6786	6786		
FYQAEMEELDFISAVEK	17	Unmodified	_FYQAEMEELDFISAVEK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.97971	2047.94486	1.0813	0.0011083	1.0337	0.0010595	2.115	0.0021678	1025.48254003832	18.178	0.16849	18.178	18.133	18.302	0	189	79	1.1977968526266	0.0517600588774003	1.1977968526266	482.981880389768	0	20.8709603058919						876	20	5	NaN	NaN	NaN	6.0304E-10	1	32496	70.552	68.82	1	248440			6787	961	5772	5923	6787	6787		
FYQGFLFSEK	10	Unmodified	_FYQGFLFSEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.313689	1264.61282	1.5675	0.00099271	0.12423	7.8674E-05	1.6917	0.0010714	633.313247852145	13.895	0.24827	13.895	13.77	14.019	0	528	49	0.971237000454584	0.032338985271784	0.971237000454584	393.256399007389	0	13.0941396276937						555	29	3	NaN	NaN	NaN	0.0015599	1	11350	76.572	59.177	1	150390			6788	1465	5773	5924	6788	6788		
FYQGFLFSEKPEK	13	Unmodified	_FYQGFLFSEKPEK_			0	0	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.608325	1618.80314	-0.57532	-0.00031102	-0.91965	-0.00049717	-1.495	-0.0008082	540.942027057883	11.545	0.19516	11.545	11.474	11.669	0	723	34	0.839303037468863	0.022429693259391	0.839303037468863	508.544708726553	0	13.5904450671621						439	23	4	NaN	NaN	NaN	0.00037933	1	22155	64.906	63.064	1	155620			6789	1465	5774	5925	6789	6789		
FYQGFLFSEKPEK	13	Unmodified	_FYQGFLFSEKPEK_			0	0	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.408849	1618.80314	2.2868	0.0018532	-1.4071	-0.0011403	0.87969	0.00071291	810.908792449527	11.536	0.14195	11.536	11.483	11.624	0	282	37	1.13599383354359	0.0239780653182871	1.13599383354359	458.878122906457	0	9.68580046764998						468	17	5	NaN	NaN	NaN	0.0074281	1	22156	55.754	53.083	1	137150			6790	1465	5774	5925	6790	6790		
FYQVPVPLPDR	11	Unmodified	_FYQVPVPLPDR_			0	0	0	Q9Y2R9	Q9Y2R9	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.861338	1329.70812	0.61007	0.00040622	-0.92319	-0.00061472	-0.31312	-0.00020849	665.86101632598	13.363	0.12419	13.363	13.309	13.434	0	531	34	0.969216233931596	0.0222315106769172	0.969216233931596	392.2305986271	0	8.99683521170516						222	15	3	NaN	NaN	NaN	0.0051759	1	13287	72.042	70.071	1	48593			6791	3350	5775	5926	6791	6791		
FYSLLDPSYAK	11	Unmodified	_FYSLLDPSYAK_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.332079	1302.6496	1.1279	0.00073577	1.8761	0.0012238	3.004	0.0019596	652.333229717924	13.292	0.16842	13.292	13.203	13.371	0	480	73	1.00353128488872	0.048428051596847	1.00353128488872	406.204245402123	0	19.6024582904495						632	20	3	NaN	NaN	NaN	3.9786E-05	1	12429	105.36	81.783	1	158880			6792	1097	5776	5927	6792	6792		
FYSQAIELNPSNAIYYGNR	19	Unmodified	_FYSQAIELNPSNAIYYGNR_			0	0	0	P53041	P53041	P53041	PPP5C	Serine/threonine-protein phosphatase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.53964	2219.06473	0.34884	0.0003874	0.00095177	1.057E-06	0.34979	0.00038845	1111.04112344422	14.134	0.053197	14.134	14.107	14.161	0	69	25	1.27715511956461	0.015830364729515	1.27715511956461	514.713629536561	0	6.37988632860345						114	7	3	NaN	NaN	NaN	1.7455E-10	1	34883	91.032	88.93	1	18218			6793	1230	5777	5928	6793	6793		
FYSVNVDYSK	10	Unmodified	_FYSVNVDYSK_			0	0	0	O00483	O00483	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.292953	1220.57135	1.3637	0.00083361	1.8162	0.0011102	3.1799	0.0019438	611.294164200976	8.7511	0.20427	8.7511	8.6979	8.9021	0	543	91	0.961130371139249	0.0607280408827762	0.961130371139249	389.315832209365	0	24.5985232437287						835	24	5	NaN	NaN	NaN	5.3796E-05	1	10026	76.605	53.295	1	431110			6794	84	5778	5929	6794	6794		
FYTDVEHTGATSEFYDK	17	Unmodified	_FYTDVEHTGATSEFYDK_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.630294	2008.86905	0.016765	1.1243E-05	2.3226	0.0015576	2.3393	0.0015688	670.965792266584	9.2391	0.097531	9.2391	9.1858	9.2834	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	533.570054857152	0	9.83825746345201						207	12	4	NaN	NaN	NaN	0.0017773	1	31788	46.358	44.648	1	53424			6795	407	5779	5930	6795	6795		
FYTEDSPGLK	10	Unmodified	_FYTEDSPGLK_			0	0	0	P60468	P60468	P60468	SEC61B	Protein transport protein Sec61 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.779679	1155.5448	0.75962	0.00043965	1.6673	0.00096497	2.4269	0.0014046	578.780652952079	6.5249	0.28374	6.5249	6.4629	6.7466	0	636	49	0.898312834727904	0.0324871583843739	0.898312834727904	364.099800510871	0	13.1675374431207						619	33	5	NaN	NaN	NaN	0.00011257	1	8210	96.311	88.664	1	344230			6796	1305	5780	5931	6796	6796		
FYTLIPHDFGMK	12	Unmodified	_FYTLIPHDFGMK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.247962	1467.72206	0.058263	2.8563E-05	-1.4784	-0.00072478	-1.4201	-0.00069622	490.247426573221	13.841	0.15959	13.841	13.77	13.93	0	714	49	0.845418525735192	0.032613681095942	0.845418525735192	512.696706246599	0	19.7782830248788						497	19	4	NaN	NaN	NaN	0.035787	1	17517	23.836	23.546	1	178980			6797	611	5781	5932	6797	6797		
FYTLIPHDFGMK	12	Unmodified	_FYTLIPHDFGMK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.868305	1467.72206	2.1118	0.0015519	0.8721	0.00064088	2.9839	0.0021928	734.869097500395	13.841	0.22166	13.841	13.762	13.983	0	381	79	1.06991323971056	0.0522395956348372	1.06991323971056	432.562475324936	0	21.1203001879777						1240	26	5	NaN	NaN	NaN	2.5583E-23	1	17518	175.07	153.92	1	628490			6798	611	5781	5932	6798	6798		
FYTQQWEDYR	10	Unmodified	_FYTQQWEDYR_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.317491	1434.62043	1.7988	0.0012921	0.92085	0.00066146	2.7197	0.0019536	718.317969454987	10.01	0.133	10.01	9.9662	10.099	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	411.516241983477	0	8.96028509359155						253	16	2	NaN	NaN	NaN	0.00014325	1	16517	102.55	85.076	1	127880			6799	1694	5782	5933	6799	6799		
FYVHNDIFR	9	Unmodified	_FYVHNDIFR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.204974	1209.59309	-2.2618	-0.00091422	0.4055	0.0001639	-1.8563	-0.00075032	404.20521227752	9.4164	0.22167	9.4164	9.3632	9.5849	0	831	37	0.76571780291124	0.0245899287462689	0.76571780291124	465.28576653808	0	14.9419848961651						546	26	4	NaN	NaN	NaN	0.020251	1	9712	21.275	17.072	1	370970			6800	1649	5783	5934	6800	6800		
FYVHNDMFR	9	Unmodified	_FYVHNDMFR_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.190447	1227.54951	-1.5686	-0.00064342	-0.72926	-0.00029914	-2.2978	-0.00094255	410.190193109591	8.4938	0.15075	8.4938	8.4495	8.6002	0	819	31	0.773912161060781	0.0204801911124388	0.773912161060781	470.187566527852	0	12.4426668886867						349	18	4	NaN	NaN	NaN	0.047554	1	10216	27.736	22.829	1	162370			6801	3292	5784	5935	6801	6801		
FYVHNDMFR	9	Unmodified	_FYVHNDMFR_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.782033	1227.54951	1.1423	0.00070227	0.33249	0.00020441	1.4748	0.00090668	614.782816482087	8.5027	0.10641	8.5027	8.4495	8.5559	0	543	43	0.961130371139249	0.028308359885891	0.961130371139249	389.291091648771	0	11.4658662900251						184	13	2	NaN	NaN	NaN	0.031463	1	10218	42.075	34.428	1	42198			6802	3292	5784	5935	6802	6802		
GAAGALLVYDITR	13	Unmodified	_GAAGALLVYDITR_			0	0	0	P61019;Q8WUD1	P61019	P61019	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.369527	1318.7245	1.1913	0.00078667	1.7701	0.0011689	2.9613	0.0019556	660.370842834918	14.205	0.19508	14.205	14.152	14.347	0	456	73	1.01965166402748	0.0483411285821531	1.01965166402748	412.676570185945	0	19.5647708389						594	23	4	NaN	NaN	NaN	5.0628E-05	1	12942	83.438	50.012	1	201320			6803	1322	5785	5936	6803	6803		
GAALDVHESEPFSFAQGPLK	20	Unmodified	_GAALDVHESEPFSFAQGPLK_			0	0	0	P56545	P56545	P56545	CTBP2	C-terminal-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.52346	2099.03237	1.5707	0.0016501	-0.54158	-0.00056895	1.0291	0.0010811	1051.02445102527	13.309	0.079813	13.309	13.274	13.354	0	96	61	1.2593374219024	0.039630166742592	1.2593374219024	507.713360428988	0	15.9772629489938						379	10	4	NaN	NaN	NaN	2.427E-05	1	33296	63.766	61.664	1	74221			6804	1287	5786	5937	6804	6804		
GAALDVHESEPFSFAQGPLK	20	Unmodified	_GAALDVHESEPFSFAQGPLK_			0	0	0	P56545	P56545	P56545	CTBP2	C-terminal-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.684733	2099.03237	0.72229	0.0005061	0.4908	0.00034389	1.2131	0.00084999	701.019482130282	13.318	0.079813	13.318	13.274	13.354	0	534	91	0.967195187796614	0.0606608223075645	0.967195187796614	584.898485971638	0	36.6838292551037						432	10	3	NaN	NaN	NaN	0.033928	1	33297	19.637	19.07	1	78096			6805	1287	5786	5937	6805	6805		
GAAPNVVYTYTGK	13	Unmodified	_GAAPNVVYTYTGK_			0	0	0	Q16630	Q16630	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.845884	1339.67722	1.6012	0.0010742	0.35257	0.00023652	1.9538	0.0013107	670.843742332256	7.9172	0.21281	7.9172	7.7842	7.997	0	504	55	0.987393073566096	0.0363411222858506	0.987393073566096	399.555964908412	0	14.7057059336417						434	25	3	NaN	NaN	NaN	0.00090275	1	13581	81.799	69.203	1	188570			6806	1895	5787	5938	6806	6806		
GAAVDEYFR	9	Unmodified	_GAAVDEYFR_			0	0	0	Q86X55	Q86X55	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.245806	1026.47706	0.64798	0.00033322	2.2493	0.0011567	2.8972	0.0014899	514.247044508606	8.0325	0.14203	8.0325	7.9881	8.1302	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	354.739321369853	0	8.25678120866888						267	17	3	NaN	NaN	NaN	0.0045833	1	4884	56.014	42.462	1	90004			6807	2183	5788	5939	6807	6807		
GAAYAHAEESIK	12	Unmodified	_GAAYAHAEESIK_			0	0	0	Q9UJ83	Q9UJ83	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.806759	1245.59897	2.0532	0.0012808	0.054081	3.3736E-05	2.1073	0.0013145	623.806932732691	3.51	0.079816	3.51	3.4834	3.5633	0	510	25	0.983355730988811	0.0161538387666367	0.983355730988811	398.228950041143	0	6.54180989488214						83	10	2	NaN	NaN	NaN	0.0057082	1	10784	68.49	57.13	1	16247			6808	3245	5789	5940	6808	6808		
GADCCVLVFDVTAPNTFK	18	Unmodified	_GADCCVLVFDVTAPNTFK_			0	0	0	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.47407	2012.93358	1.236	0.0012453	1.0553	0.0010632	2.2913	0.0023084	1007.97732509454	16.218	0.15072	16.218	16.174	16.324	0	216	76	1.17988115188462	0.0497590341763592	1.17988115188462	475.813536818043	0	20.066446524962						600	18	5	NaN	NaN	NaN	8.5704E-05	1	31847	76.196	73.302	1	117980			6809	1180	5790	5941	6809	6809		
GADFLVTEVENGGSLGSK	18	Unmodified	_GADFLVTEVENGGSLGSK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.441605	1778.86866	2.3829	0.0021219	1.1402	0.0010153	3.5232	0.0031372	890.442880515875	14.09	0.32806	14.09	14.01	14.338	0	228	109	1.17191150690002	0.0718354292014163	1.17191150690002	473.025269256018	0	28.9953405526383						2275	38	6	NaN	NaN	NaN	3.732E-10	1	26646	155.34	117.24	1	1706900			6810	699	5791	5942	6810	6810		
GADGMILGGPQSDSDTDAQR	20	Unmodified	_GADGMILGGPQSDSDTDAQR_			0	0	0	Q8NB90	Q8NB90	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.942175	1989.8698	2.2216	0.0022126	-0.66566	-0.00066296	1.556	0.0015496	995.940739225997	8.3076	0.062067	8.3076	8.2721	8.3342	0	255	25	1.15396378101328	0.0159634054773448	1.15396378101328	465.398722846663	0	6.43811239458142						126	8	3	NaN	NaN	NaN	3.202E-07	1	31449	89.636	88.162	1	21273			6811	2285	5792	5943	6811	6811		
GADINAPDK	9	Unmodified	_GADINAPDK_			0	0	0	P58546	P58546	P58546	MTPN	Myotrophin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.724707	899.43486	0.38497	0.00017352	-0.82027	-0.00036972	-0.4353	-0.0001962	450.724707820385	2.7119	0.15963	2.7119	2.6587	2.8183	0	831	31	0.76571780291124	0.0204858974609469	0.76571780291124	311.397020804526	0	8.3310684609815						187	19	2	NaN	NaN	NaN	0.029234	1	2307	42.075	26.493	1	32840			6812	1300	5793	5944	6812	6812		
GADNLVAINLIVQHIQDILNGGPSK	25	Unmodified	_GADNLVAINLIVQHIQDILNGGPSK_			0	0	0	Q9BZX2	Q9BZX2	Q9BZX2	UCK2	Uridine-cytidine kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	867.144926	2598.41295	0.45361	0.00039335	-1.1503	-0.00099744	-0.69664	-0.00060409	867.478118952225	20.182	0.017729	20.182	20.173	20.19	0	468	10	1.01159370163332	0.00604472420668656	1.01159370163332	610.975210360049	0	3.65084978068353						15	3	2	NaN	NaN	NaN	0.070718	1	37238	9.8806	9.8336	1	5696			6813	2815	5794	5945	6813	6813		
GADPGMPEPTVLSLLWG	17	Unmodified	_GADPGMPEPTVLSLLWG_			0	0	0	Q9P0U1	Q9P0U1	Q9P0U1	TOMM7	Mitochondrial import receptor subunit TOM7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.43728	1738.86001	0.64587	0.00056219	0.21119	0.00018383	0.85706	0.00074602	870.437376375956	20.252	0.026605	20.252	20.252	20.279	0	399	31	1.0578662689527	0.0200865957702232	1.0578662689527	427.068526341672	0	8.10910897395638						95	4	5	NaN	NaN	NaN	0.0015111	1	25570	44.598	28.31	1	40273			6814	3148	5795	5946	6814	6814		
GADSELSTVPSVTK	14	Unmodified	_GADSELSTVPSVTK_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.856646	1389.69874	2.1591	0.0015025	-1.4341	-0.00099796	0.725	0.0005045	695.855616014204	7.6511	0.25726	7.6511	7.589	7.8463	0	504	34	0.987393073566096	0.0222099939443385	0.987393073566096	399.409088394597	0	8.98413577332428						368	30	3	NaN	NaN	NaN	1.4332E-05	1	15142	90.306	85.767	1	104160			6815	1077	5796	5947	6815	6815		
GADSLEDFLYHEGYACTSIHGDR	23	Unmodified	_GADSLEDFLYHEGYACTSIHGDR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	654.038221	2612.12378	0.47804	0.00031266	-0.0014749	-9.6464E-07	0.47657	0.00031169	654.289083146336	14.036	0.07979	14.036	14.01	14.09	0	579	22	0.936845902828289	0.0141786956334647	0.936845902828289	754.416803781396	0	11.4177221774627						231	10	5	NaN	NaN	NaN	0.023788	1	37284	12.066	10.641	1	51936			6816	93	5797	5948	6816	6816		
GADSLEDFLYHEGYACTSIHGDR	23	Unmodified	_GADSLEDFLYHEGYACTSIHGDR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.715203	2612.12378	1.7046	0.0014859	0.40187	0.00035032	2.1064	0.0018362	872.050066266739	14.036	0.13301	14.036	14.001	14.134	0	390	46	1.06389100039157	0.0301153570009167	1.06389100039157	642.543412061374	0	18.1883522237649						613	16	6	NaN	NaN	NaN	9.5636E-18	1	37285	145.73	139.9	1	224090			6817	93	5797	5948	6817	6817		
GAEAANVTGPDGVPVEGSR	19	Unmodified	_GAEAANVTGPDGVPVEGSR_			0	0	0	P16989	P16989	P16989	YBX3	Y-box-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.934479	1781.8544	2.7912	0.0024896	-3.3878	-0.0030217	-0.59654	-0.00053208	891.931576426962	7.0037	0.17743	7.0037	6.9239	7.1014	0	366	49	1.07994477139643	0.0320898495597994	1.07994477139643	435.898581504728	0	12.952440045364						484	21	4	NaN	NaN	NaN	2.3334E-26	1	26721	213.29	194.76	1	419770			6818	733	5798	5949	6818	6818		
GAEAANVTGPGGVPVQGSK	19	Unmodified	_GAEAANVTGPGGVPVQGSK_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.436658	1694.85876	3.1274	0.0026534	-1.2328	-0.001046	1.8945	0.0016074	848.436008568843	5.9663	0.51439	5.9663	5.8509	6.3653	0	390	118	1.06389100039157	0.0783324531994369	1.06389100039157	429.588940574397	0	31.6298902520601						2869	59	6	NaN	NaN	NaN	2.2525E-35	1	24345	257.12	241.24	1	2811200			6819	1440	5799	5950	6819	6819		
GAEADQIIEYLK	12	Unmodified	_GAEADQIIEYLK_			0	0	0	Q12904	Q12904	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.351	1348.68745	1.2517	0.00084534	0.30684	0.00020722	1.5585	0.0010526	675.351352510796	14.116	0.19507	14.116	14.028	14.223	0	456	40	1.01965166402748	0.0261829569110703	1.01965166402748	412.581496655231	0	10.5944058449923						597	23	4	NaN	NaN	NaN	0.00063019	1	13858	71.066	57.071	1	280760			6820	1604	5800	5951	6820	6820		
GAEDDELEEEADWIYR	16	Unmodified	_GAEDDELEEEADWIYR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.413242	1938.81193	1.6918	0.0016418	0.97398	0.00094517	2.6658	0.0025869	970.915143626851	14.976	0.05321	14.976	14.959	15.012	0	261	22	1.14997238118939	0.0139727817410424	1.14997238118939	463.873566803577	0	5.63631284577605						106	7	3	NaN	NaN	NaN	1.5075E-07	1	30478	110.58	104.55	1	19960			6821	2107	5801	5952	6821	6821		
GAEDDLNTVAAGTMTGMLYK	20	Unmodified	_GAEDDLNTVAAGTMTGMLYK_			0	0	0	Q5SRD1;O14925	Q5SRD1	Q5SRD1	TIMM23B;TIMM23	Putative mitochondrial import inner membrane translocase subunit Tim23B;Mitochondrial import inner membrane translocase subunit Tim23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.47955	2056.94454	2.122	0.0021846	0.42058	0.00043298	2.5426	0.0026175	1029.48032429639	15.517	0.10641	15.517	15.464	15.571	0	183	52	1.20177511391933	0.0338082708045273	1.20177511391933	484.57174010243	0	13.6319452981314						452	13	6	NaN	NaN	NaN	4.1897E-11	1	32655	144.16	135.79	1	103680			6822	125	5802	5953	6822	6822		
GAEEMETVIPVDVMR	15	Unmodified	_GAEEMETVIPVDVMR_			0	0	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.405123	1674.79569	1.8466	0.0015482	0.17538	0.00014704	2.022	0.0016953	838.405974842483	14.905	0.28375	14.905	14.826	15.109	0	363	103	1.08195024817156	0.0681722088001495	1.08195024817156	436.923531333773	0	27.5299555207106						1730	33	6	NaN	NaN	NaN	9.2999E-12	1	23757	153.25	135.52	1	984530			6823	2644	5803	5954	6823	6823		
GAEEMETVIPVDVMR	15	Oxidation (M)	_GAEEMETVIPVDVM(Oxidation (M))R_	GAEEMETVIPVDVM(1)R	GAEEM(-85)ETVIPVDVM(85)R	0	1	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.40258	1690.79061	1.8469	0.0015632	-0.133	-0.00011258	1.7139	0.0014506	846.402135129972	12.485	0.19505	12.485	12.414	12.609	0	363	76	1.08195024817156	0.0501576941762703	1.08195024817156	436.889612610572	0	20.2535889382556						771	23	4	NaN	NaN	NaN	0.00011623	1	24225	86.838	77.577	2	209840			6824	2644	5803	5955	6824	6824	612;613	
GAEEMETVIPVDVMR	15	2 Oxidation (M)	_GAEEM(Oxidation (M))ETVIPVDVM(Oxidation (M))R_	GAEEM(1)ETVIPVDVM(1)R	GAEEM(81)ETVIPVDVM(81)R	0	2	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.400037	1706.78552	2.1551	0.0018413	1.9291	0.0016482	4.0842	0.0034895	854.402675491683	9.975	0.16846	9.975	9.8864	10.055	0	363	70	1.08195024817156	0.046157799047351	1.08195024817156	436.856317956066	0	18.6370178951005						491	20	3	NaN	NaN	NaN	0.00026582	1	24674	80.623	78.144	1	99049			6825	2644	5803	5956	6825	6825	612;613	
GAEEWILTGSYDK	13	Unmodified	_GAEEWILTGSYDK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.851364	1467.68817	1.2971	0.00095314	1.4292	0.0010502	2.7262	0.0020034	734.852094296112	12.981	0.19508	12.981	12.884	13.079	0	456	40	1.01965166402748	0.0261793407485973	1.01965166402748	412.241968961635	0	10.5842253360246						375	23	3	NaN	NaN	NaN	0.00052138	1	17510	94.791	92.655	1	112230			6826	2823	5804	5957	6826	6826		
GAEGLGEEGGLHQDPLR	17	Unmodified	_GAEGLGEEGGLHQDPLR_			0	0	0	Q9P275	Q9P275	Q9P275	USP36	Ubiquitin carboxyl-terminal hydrolase 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.923914	1733.83328	2.5069	0.0021758	-1.4134	-0.0012268	1.0934	0.00094902	867.922820743795	7.3319	0.079803	7.3319	7.2964	7.3762	0	228	28	1.17191150690002	0.0179403278515196	1.17191150690002	473.120296552416	0	7.24281072707532						178	10	3	NaN	NaN	NaN	0.00011065	1	25439	67.887	61.859	1	33957			6827	3153	5805	5958	6827	6827		
GAEHITTYTFNTHK	14	Unmodified	_GAEHITTYTFNTHK_			0	0	0	Q7Z7K6	Q7Z7K6	Q7Z7K6	CENPV	Centromere protein V	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.5986	1618.77397	-0.087204	-4.7143E-05	0.97153	0.00052521	0.88433	0.00047807	540.599068989183	5.0351	0.070925	5.0351	5.0085	5.0795	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	487.517984080315	0	9.90666533931602						143	9	3	NaN	NaN	NaN	0.00012889	1	22148	58.889	54.362	1	38987			6828	2155	5806	5959	6828	6828		
GAEILEVLHSLPAVR	15	Unmodified	_GAEILEVLHSLPAVR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.31039	1602.90934	-1.2546	-0.00067158	-0.89896	-0.00048122	-2.1535	-0.0011528	535.309861335359	16.777	0.14187	16.777	16.723	16.865	0	735	118	0.831145085810763	0.0794021574135222	0.831145085810763	503.644010934098	0	48.1148498851524						1197	17	4	NaN	NaN	NaN	1.7612E-07	1	21693	110.52	96.066	1	391510			6829	1790	5807	5960	6829	6829		
GAEILEVLHSLPAVR	15	Unmodified	_GAEILEVLHSLPAVR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.461947	1602.90934	0.8101	0.00065008	1.286	0.0010319	2.0961	0.001682	802.463005673497	16.777	0.14187	16.777	16.714	16.856	0	309	55	1.11800162319566	0.0359918600529883	1.11800162319566	451.648254283737	0	14.5399259035886						614	17	5	NaN	NaN	NaN	9.7571E-08	1	21694	108.24	100.69	1	279100			6830	1790	5807	5960	6830	6830		
GAEISEENSEGGLHVDLAQIIEACDVCLK	29	Unmodified	_GAEISEENSEGGLHVDLAQIIEACDVCLK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1052.83231	3155.47509	2.0062	0.0021122	0.21274	0.00022398	2.219	0.0023362	1053.16759893902	17.903	0.097524	17.903	17.867	17.965	0	363	55	1.08195024817156	0.0361010836697162	1.08195024817156	652.854436099568	0	21.7835826200012						509	12	5	NaN	NaN	NaN	3.2618E-15	1	38417	67.607	67.283	1	96319			6831	2115	5808	5961	6831	6831		
GAEQLAEGGR	10	Unmodified	_GAEQLAEGGR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.246338	986.478122	0.71146	0.00035163	2.3442	0.0011586	3.0557	0.0015103	494.247272414317	3.1907	0.31923	3.1907	3.1375	3.4567	0	738	37	0.829104889055312	0.0244840671338465	0.829104889055312	336.727121445352	0	9.94379547881903						289	37	2	NaN	NaN	NaN	0.00070422	1	3980	98.009	51.173	1	126460			6832	1581	5809	5962	6832	6832		
GAEVHLVPWNHDFTK	15	Unmodified	_GAEVHLVPWNHDFTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.961761	1748.86345	0.17562	0.00010256	-0.7949	-0.00046419	-0.61927	-0.00036163	584.295403140205	10.019	0.19509	10.019	9.975	10.17	0	705	46	0.851531465363931	0.030556215070185	0.851531465363931	515.628774538	0	18.5027381512266						781	23	5	NaN	NaN	NaN	6.8941E-12	1	25853	160.52	144.24	1	348880			6833	922	5810	5963	6833	6833		
GAEVHLVPWNHDFTK	15	Unmodified	_GAEVHLVPWNHDFTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.439003	1748.86345	2.6558	0.002325	-0.63693	-0.00055759	2.0189	0.0017674	876.440862443147	10.019	0.12415	10.019	9.975	10.099	0	282	184	1.13599383354359	0.12151257554177	1.13599383354359	458.588463414169	0	49.053316715086						794	15	5	NaN	NaN	NaN	0.005789	1	25855	35.845	31.863	1	197030			6834	922	5810	5963	6834	6834		
GAFASLSELHCDK	13	Unmodified	_GAFASLSELHCDK_			0	0	0	CON__Q3SX09	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.837733	1433.66091	2.2676	0.0016278	-0.58046	-0.00041667	1.6872	0.0012111	717.837357208937	8.414	0.18622	8.414	8.3608	8.547	0	387	31	1.06589869032374	0.0200755173877298	1.06589869032374	431.035013963992	0	8.11826770790606						524	22	4	NaN	NaN	NaN	2.396E-05	1	16491	84.309	70.315	1	226630		+	6835	40	5811	5964	6835	6835		
GAFFMDEDEEVYKR	14	Unmodified	_GAFFMDEDEEVYKR_			0	0	1	P55081	P55081	P55081	MFAP1	Microfibrillar-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.259255	1734.75594	-0.97331	-0.0005638	0.58958	0.00034152	-0.38374	-0.00022228	579.25978313043	10.525	0.070937	10.525	10.507	10.578	0	735	25	0.831145085810763	0.0163181723166257	0.831145085810763	503.31633358295	0	9.8817917610221						130	9	3	NaN	NaN	NaN	0.027314	1	25457	18.098	17.865	1	26471			6836	1266	5812	5965	6836	6836		
GAFGEVQLVR	10	Unmodified	_GAFGEVQLVR_			0	0	0	Q13464;O75116	Q13464;O75116	O75116	ROCK1;ROCK2	Rho-associated protein kinase 1;Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.298373	1074.58219	0.35621	0.00019175	-0.58363	-0.00031417	-0.22742	-0.00012242	538.298004950942	10.285	0.2394	10.285	10.197	10.436	0	651	37	0.888155670855968	0.0243856529681402	0.888155670855968	360.302647252018	0	9.89265238932967						244	28	2	NaN	NaN	NaN	0.045919	1	6081	43.734	37.986	1	53432			6837	301;1671	5813	5966	6837	6837		
GAFGVGQEQIDAFLK	15	Unmodified	_GAFGVGQEQIDAFLK_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.40938	1578.80421	1.2496	0.00098767	0.91486	0.00072311	2.1644	0.0017108	790.409793025094	15.996	0.079787	15.996	15.97	16.049	0	366	40	1.07994477139643	0.0260712032771278	1.07994477139643	436.331177211632	0	10.5335746035638						253	10	3	NaN	NaN	NaN	3.414E-08	1	20936	102.03	86.881	1	59088			6838	10	5814	5967	6838	6838		
GAFIDQSQSLNIHIAEPNYGK	21	Unmodified	_GAFIDQSQSLNIHIAEPNYGK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.053596	2301.13896	1.0465	0.00080374	-0.4352	-0.00033425	0.61127	0.00046949	768.38732347536	12.697	0.062075	12.697	12.662	12.724	0	525	25	0.973257487423603	0.0161627789282648	0.973257487423603	588.225014662994	0	9.76858744466597						93	8	3	NaN	NaN	NaN	0.010578	1	35652	11.918	10.976	1	10278			6839	828	5815	5968	6839	6839		
GAFSPFGNIIDLSMDPPR	18	Unmodified	_GAFSPFGNIIDLSMDPPR_			0	0	0	P18615	P18615	P18615	NELFE	Negative elongation factor E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.477468	1932.94038	1.4568	0.0014094	-2.0223	-0.0019565	-0.56549	-0.0005471	967.477583594679	19.525	0.13302	19.525	19.454	19.587	0	222	55	1.17589687683038	0.0358584890217997	1.17589687683038	474.341187932068	0	14.4648383843806						282	16	2	NaN	NaN	NaN	0.0028682	1	30378	28.277	26.908	1	78071			6840	755	5816	5969	6840	6840		
GAGAFGYFEVTHDITK	16	Unmodified	_GAGAFGYFEVTHDITK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.614138	1711.82059	-0.28212	-0.00016126	-0.37176	-0.0002125	-0.65387	-0.00037376	571.614171267223	12.582	0.16847	12.582	12.529	12.697	0	684	55	0.86578508874114	0.0366191214696816	0.86578508874114	524.348895740146	0	22.177785405753						507	20	4	NaN	NaN	NaN	0.0012449	1	24812	55.604	52.933	1	165890			6841	501	5817	5970	6841	6841		
GAGAFGYFEVTHDITK	16	Unmodified	_GAGAFGYFEVTHDITK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.917569	1711.82059	1.7957	0.0015387	1.1272	0.00096592	2.9229	0.0025047	857.420240479992	12.582	0.15072	12.582	12.538	12.689	0	234	40	1.16792504164217	0.0259209328889813	1.16792504164217	471.558973140961	0	10.4657816727666						470	18	5	NaN	NaN	NaN	0.00087192	1	24815	68.108	65.971	1	158290			6842	501	5817	5970	6842	6842		
GAGAYICGEETALIESIEGK	20	Unmodified	_GAGAYICGEETALIESIEGK_			0	0	0	P49821	P49821	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.49879	2066.98304	0.9764	0.0010101	0.19609	0.00020285	1.1725	0.0012129	1035.00115161641	18.16	0.10639	18.16	18.115	18.222	0	189	43	1.1977968526266	0.0278516583469064	1.1977968526266	482.951925617662	0	11.2297941013849						338	13	4	NaN	NaN	NaN	0.00077816	1	32831	36.059	34.537	1	77429			6843	1152	5818	5971	6843	6843		
GAGHPCYLDKPEEWHTGLLDFLQGLQ	26	Unmodified	_GAGHPCYLDKPEEWHTGLLDFLQGLQ_			0	0	1	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	746.111721	2980.41778	-1.21	-0.00090277	0.90591	0.00067591	-0.30405	-0.00022685	746.61423276712	18.94	0.053194	18.94	18.914	18.967	0	666	19	0.877991458330206	0.0122012876869253	0.877991458330206	706.560568510349	0	9.81894377540743						92	7	4	NaN	NaN	NaN	0.040564	1	38188	10.233	8.3941	1	15589			6844	2560	5819	5972	6844	6844		
GAGIGGLGITVEGPSESK	18	Unmodified	_GAGIGGLGITVEGPSESK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.928134	1627.84172	1.2072	0.00098375	1.0138	0.00082618	2.221	0.0018099	814.929133159781	11.997	0.18621	11.997	11.926	12.112	0	393	58	1.0618830335572	0.0381461250343338	1.0618830335572	428.921278353802	0	15.4081798059815						790	22	4	NaN	NaN	NaN	5.0054E-05	1	22412	111.38	104.63	1	330530			6845	326	5820	5973	6845	6845		
GAGMPGQHGQITQQELDTVVK	21	Oxidation (M)	_GAGM(Oxidation (M))PGQHGQITQQELDTVVK_	GAGM(1)PGQHGQITQQELDTVVK	GAGM(67)PGQHGQITQQELDTVVK	0	1	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.367187	2209.07973	0.57739	0.00042575	0.95814	0.0007065	1.5355	0.0011322	737.702180420446	8.5559	0.15076	8.5559	8.4938	8.6446	0	624	43	0.906433495720521	0.028418378530508	0.906433495720521	547.974310088455	0	17.1800153487369						528	18	5	NaN	NaN	NaN	0.00054726	1	34775	66.66	63.944	1	181270			6846	1125	5821	5974	6846	6846	397	
GAGQQQSQEMMEVDR	15	Unmodified	_GAGQQQSQEMMEVDR_			0	0	0	Q15435	Q15435	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.36706	1692.71957	2.6312	0.0022296	-0.81194	-0.00068801	1.8193	0.0015416	847.366651692502	5.6292	0.17738	5.6292	5.5317	5.7091	0	399	37	1.0578662689527	0.0241072414200156	1.0578662689527	427.160588910996	0	9.73437167269572						310	21	4	NaN	NaN	NaN	0.00024291	1	24269	72.327	68.822	1	54537			6847	1849	5822	5975	6847	6847		
GAGTDDHTLIR	11	Unmodified	_GAGTDDHTLIR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	385.863276	1154.568	-0.26643	-0.0001028	0.53456	0.00020627	0.26814	0.00010346	385.863406105136	3.4479	0.33702	3.4479	3.4035	3.7406	0	882	40	0.730840773481911	0.0266967111135248	0.730840773481911	444.331123328429	0	16.2308673361676						607	39	3	NaN	NaN	NaN	0.030055	1	8186	28.096	20.45	1	215160			6848	591	5823	5976	6848	6848		
GAGTDDHTLIR	11	Unmodified	_GAGTDDHTLIR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.291276	1154.568	1.7135	0.00099093	1.0008	0.00057874	2.7143	0.0015697	578.29182810521	3.4479	0.30157	3.4479	3.3947	3.6962	-4.4409E-16	612	61	0.914549654013882	0.0405639373344322	0.914549654013882	370.684530850234	0	16.441342483985						788	35	4	NaN	NaN	NaN	3.095E-30	1	8188	232.75	202.16	1	305230			6849	591	5823	5976	6849	6849		
GAGTDEGCLIEILASR	16	Unmodified	_GAGTDEGCLIEILASR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.411794	1660.80903	2.1527	0.0017898	1.0356	0.00086098	3.1883	0.0026508	831.412695720615	16.182	0.11529	16.182	16.129	16.245	0	357	43	1.08596037261705	0.0280786163643747	1.08596037261705	438.573240624005	0	11.3397597938914						453	14	5	NaN	NaN	NaN	1.5187E-06	1	23365	126.17	116.15	1	216530			6850	604	5824	5977	6850	6850		
GAGTGGLGLAVEGPSEAK	18	Unmodified	_GAGTGGLGLAVEGPSEAK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.907202	1569.79985	2.2103	0.0017371	-0.9179	-0.00072139	1.2924	0.0010157	785.906441228211	9.0883	0.19507	9.0883	8.9819	9.177	0	426	100	1.03977710643793	0.0662904159737712	1.03977710643793	420.123153440678	0	26.7847199456085						821	23	4	NaN	NaN	NaN	4.3509E-26	1	20662	165.02	129.69	1	357520			6851	792	5825	5978	6851	6851		
GAGTGGLGLTVEGPCEAK	18	Unmodified	_GAGTGGLGLTVEGPCEAK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.411794	1672.80903	2.2175	0.001857	0.19972	0.00016725	2.4172	0.0020242	837.412121453919	9.4874	0.20394	9.4874	9.3898	9.5938	0	384	73	1.06790610341098	0.0481347926295363	1.06790610341098	431.256292753279	0	19.4384432821926						1382	24	5	NaN	NaN	NaN	0.000611	1	23692	79.235	68.75	1	457480			6852	326	5826	5979	6852	6852		
GAGTNEDALIEILTTR	16	Unmodified	_GAGTNEDALIEILTTR_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.628336	1672.86318	-1.2636	-0.00070589	0.11771	6.5756E-05	-1.1459	-0.00064014	558.628216437054	17.504	0.088686	17.504	17.468	17.557	0	711	28	0.847456455381371	0.0183439172239627	0.847456455381371	513.344325396496	0	11.111775422404						180	11	3	NaN	NaN	NaN	0.00068104	1	23707	72.327	64.769	1	42179			6853	669	5827	5980	6853	6853		
GAGTNEDALIEILTTR	16	Unmodified	_GAGTNEDALIEILTTR_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.438866	1672.86318	2.2101	0.0018508	-1.6478	-0.0013799	0.56231	0.0004709	837.437104668383	17.504	0.21282	17.504	17.442	17.654	0	345	58	1.09397730668811	0.0380620944866981	1.09397730668811	441.784608075473	0	15.3707461686237						745	25	4	NaN	NaN	NaN	6.9777E-25	1	23708	196.42	157.38	1	398210			6854	669	5827	5980	6854	6854		
GAGYTFGQDISETFNHANGLTLVSR	25	Unmodified	_GAGYTFGQDISETFNHANGLTLVSR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	885.764774	2654.27249	1.7725	0.00157	0.96889	0.00085821	2.7414	0.0024282	886.099951803354	16.032	0.062067	16.032	16.005	16.067	0	366	67	1.07994477139643	0.0441296375038467	1.07994477139643	652.184356899529	0	26.6501213931899						437	8	4	NaN	NaN	NaN	0.00034805	1	37458	48.201	47.554	1	88919			6855	1439	5828	5981	6855	6855		
GAHGIIVVYDVTDQESFNNVK	21	Unmodified	_GAHGIIVVYDVTDQESFNNVK_			0	0	0	P62820	P62820	P62820	RAB1A	Ras-related protein Rab-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.053485	2304.13863	1.3769	0.0010589	-1.4153	-0.0010885	-0.038421	-2.9548E-05	769.386546746405	12.733	0.19509	12.733	12.689	12.884	0	591	31	0.928742107665821	0.0202651042983174	0.928742107665821	561.316079530453	0	12.2478875482409						504	23	5	NaN	NaN	NaN	4.875E-06	1	35672	137.39	129.39	1	112680			6856	1398	5829	5982	6856	6856		
GAHGIIVVYDVTDQESYANVK	21	Unmodified	_GAHGIIVVYDVTDQESYANVK_			0	0	0	Q9H0U4	Q9H0U4	Q9H0U4	RAB1B	Ras-related protein Rab-1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.049852	2277.12773	0.47407	0.00036032	0.25947	0.00019721	0.73354	0.00055753	760.384230694921	12.059	0.15076	12.059	12.024	12.174	0	573	46	0.940896116921038	0.0303703038284173	0.940896116921038	568.702156801247	0	18.3566038580851						388	18	4	NaN	NaN	NaN	9.862E-23	1	35444	150.85	142.48	1	70316			6857	2850	5830	5983	6857	6857		
GAIDHYVTPVK	11	Unmodified	_GAIDHYVTPVK_			0	0	0	Q9NX20	Q9NX20	Q9NX20	MRPL16	39S ribosomal protein L16, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.324588	1198.63462	1.0211	0.00061302	-1.2737	-0.00076464	-0.25257	-0.00015162	600.324295875184	5.8243	0.13301	5.8243	5.7711	5.9041	0	591	31	0.928742107665821	0.0202622968311691	0.928742107665821	376.273617027899	0	8.20913325133768						260	16	4	NaN	NaN	NaN	0.00039655	1	9426	68.49	55.217	1	76578			6858	3092	5831	5984	6858	6858		
GAIETYQEVASLPDVPADLLK	21	Unmodified	_GAIETYQEVASLPDVPADLLK_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1115.08609	2228.15763	0.80318	0.00089562	-0.60127	-0.00067047	0.20192	0.00022515	1115.58672697121	18.39	0.14186	18.39	18.328	18.47	0	69	64	1.27715511956461	0.0415689526304328	1.27715511956461	514.700561821448	0	16.7525173296934						758	17	5	NaN	NaN	NaN	8.2739E-17	1	34973	122.13	109.75	1	194280			6859	1596	5832	5985	6859	6859		
GAIILSSLLQSCDLEVANK	19	Unmodified	_GAIILSSLLQSCDLEVANK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.04317	2030.07179	0.93206	0.00094701	-2.7298	-0.0027736	-1.7978	-0.0018266	1016.54329345264	17.92	0.13298	17.92	17.876	18.009	0	177	64	1.2057522832638	0.0417574339727618	1.2057522832638	486.218546384376	0	16.8386484759703						612	16	5	NaN	NaN	NaN	4.0445E-07	1	32162	98.865	79.86	1	126220			6860	1842	5833	5986	6860	6860		
GAILSEEELAAMSPTAAAVAK	21	Unmodified	_GAILSEEELAAMSPTAAAVAK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.52735	2029.04016	0.015296	1.5533E-05	0.3486	0.00035401	0.36389	0.00036954	1015.52701494739	14.967	0.062087	14.967	14.941	15.003	0	60	31	1.28308947459206	0.0197798317073412	1.28308947459206	517.406476673177	0	7.97622709525967						143	8	3	NaN	NaN	NaN	1.1981E-07	1	32140	109.47	102.61	1	23492			6861	667	5834	5987	6861	6861		
GAILSEEELAAMSPTAAAVAK	21	Unmodified	_GAILSEEELAAMSPTAAAVAK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.52735	2029.04016	1.2383	0.0012575	-0.38272	-0.00038866	0.8556	0.00086888	1016.02797036106	14.976	0.15073	14.976	14.932	15.083	0	150	67	1.22363604450103	0.0436889044059285	1.22363604450103	493.431853508469	0	17.6175727869821						553	18	3	NaN	NaN	NaN	3.1634E-12	1	32141	141.87	135.67	1	130610			6862	667	5834	5987	6862	6862		
GALCHLELK	9	Unmodified	_GALCHLELK_			0	0	0	O95801	O95801	O95801	TTC4	Tetratricopeptide repeat protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.781502	1039.54845	1.0532	0.00054851	1.5818	0.00082378	2.6351	0.0013723	520.78241858692	6.1791	0.070952	6.1791	6.1436	6.2146	0	648	25	0.890187667287968	0.0162548450794181	0.890187667287968	361.280958395042	0	6.59699771706153						133	9	3	NaN	NaN	NaN	0.0084408	1	5220	62.969	34.873	1	34373			6863	454	5835	5988	6863	6863		
GALDTTDGYMGVNQAPEK	18	Unmodified	_GALDTTDGYMGVNQAPEK_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.930548	1865.84654	1.9509	0.001822	-0.47437	-0.00044303	1.4765	0.001379	933.93049157894	8.8753	0.071074	8.8753	8.8576	8.9287	0	276	34	1.13998907770044	0.0219783806996243	1.13998907770044	459.974302846458	0	8.86805894701769						113	9	2	NaN	NaN	NaN	0.0096986	1	28825	32.61	31.241	1	21756			6864	3311	5836	5989	6864	6864		
GALEGSSCPFR	11	Unmodified	_GALEGSSCPFR_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.774405	1179.53426	1.4641	0.00086496	0.58406	0.00034505	2.0482	0.00121	590.774831193057	6.3919	0.16846	6.3919	6.3299	6.4983	0	597	34	0.924688525662974	0.0222993386334626	0.924688525662974	374.700360662931	0	9.03609160988839						339	20	5	NaN	NaN	NaN	0.00045866	1	8858	81.163	57.042	1	121170			6865	910	5837	5990	6865	6865		
GALEMVQMAVEAK	13	Unmodified	_GALEMVQMAVEAK_			0	0	0	O43617	O43617	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.849255	1375.68396	5.3216E-05	3.6658E-08	5.1174	0.0035251	5.1175	0.0035252	688.853221037406	14.808	0.12418	14.808	14.737	14.861	0	471	34	1.00957851518677	0.0221701170870099	1.00957851518677	408.424249468663	0	8.96890464256683						215	15	4	NaN	NaN	NaN	0.017967	1	14669	35.845	29.155	1	53545			6866	212	5838	5991	6866	6866		
GALHTVSHEDIR	12	Unmodified	_GALHTVSHEDIR_			0	0	0	Q13136	Q13136	Q13136	PPFIA1	Liprin-alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	445.56523	1333.67386	-0.74222	-0.00033071	1.7722	0.00078962	1.0299	0.00045891	445.566354716514	3.1286	0.070942	3.1286	3.102	3.173	0	780	19	0.800512323802183	0.0122658937874733	0.800512323802183	485.918479705911	0	7.44551243525405						100	9	3	NaN	NaN	NaN	0.034464	1	13396	44.57	42.771	1	23197			6867	1632	5839	5992	6867	6867		
GALMLENLQK	10	Unmodified	_GALMLENLQK_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.807716	1115.60088	1.0059	0.00056209	4.1248	0.002305	5.1306	0.002867	558.809968731433	10.099	0.13302	10.099	10.046	10.179	0	612	31	0.914549654013882	0.0202819613609688	0.914549654013882	370.837303560466	0	8.22405631997003						197	16	2	NaN	NaN	NaN	0.016574	1	7154	42.075	2.7505	1	66855			6868	3269	5840	5993	6868	6868		
GALNPADITVLFK	13	Unmodified	_GALNPADITVLFK_			0	0	0	Q8IXH7	Q8IXH7	Q8IXH7	NELFCD	Negative elongation factor C/D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.887552	1357.76055	0.87075	0.00059201	-1.3877	-0.00094347	-0.51693	-0.00035146	679.886576825207	17.672	0.133	17.672	17.619	17.752	0	465	58	1.01360860968299	0.0383097280775055	1.01360860968299	410.108500438065	0	15.5002088419213						435	16	2	NaN	NaN	NaN	0.027812	1	14135	33.1	29.364	1	148580			6869	2211	5841	5994	6869	6869		
GALPLDTVTFYK	12	Unmodified	_GALPLDTVTFYK_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.861003	1323.70745	1.3237	0.00087746	-1.6872	-0.0011184	-0.36342	-0.00024089	662.859997308373	14.276	0.24825	14.276	14.205	14.453	0	525	46	0.973257487423603	0.0303198952028392	0.973257487423603	393.884414278897	0	12.2706830589939						588	29	3	NaN	NaN	NaN	0.00091701	1	13103	78.816	54.98	1	442100			6870	892	5842	5995	6870	6870		
GALQGSAWQVSSEDVR	16	Unmodified	_GALQGSAWQVSSEDVR_			0	0	0	Q9Y4W2	Q9Y4W2	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.413182	1688.81181	2.2087	0.0018672	-1.8331	-0.0015497	0.37554	0.00031749	845.409842726205	9.6115	0.11525	9.6115	9.5494	9.6647	0	351	28	1.08996939197032	0.0180393458304879	1.08996939197032	440.131927470499	0	7.28432569682258						128	14	2	NaN	NaN	NaN	0.053327	1	24176	47.915	39.162	1	38519			6871	3415	5843	5996	6871	6871		
GALQNIIPASTGAAK	15	Unmodified	_GALQNIIPASTGAAK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.398815	1410.78308	2.5784	0.0018214	1.8437	0.0013024	4.4221	0.0031238	706.40039453051	10.445	0.72711	10.445	10.117	10.844	0	459	91	1.01763759082241	0.0604849036106335	1.01763759082241	411.582632781978	0	24.4630663176566						3860	83	5	NaN	NaN	NaN	1.4907E-06	1	15793	115.04	84.444	1	7362500			6872	513	5844	5997	6872	6872		
GALQYLVPILTQTLTK	16	Unmodified	_GALQYLVPILTQTLTK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.016984	1758.02912	-0.27598	-0.000162	-0.03596	-2.1109E-05	-0.31194	-0.00018311	587.351316330357	20.049	0.062085	20.049	20.022	20.084	0	633	31	0.900343422309015	0.0203072864196308	0.900343422309015	545.163598793795	0	12.2961895116312						160	8	5	NaN	NaN	NaN	0.0029766	1	26096	59.731	54.914	1	92890			6873	1780	5845	5998	6873	6873		
GALQYLVPILTQTLTK	16	Unmodified	_GALQYLVPILTQTLTK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.021837	1758.02912	1.9557	0.0017211	0.83553	0.00073529	2.7912	0.0024564	880.524200864164	20.049	0.12413	20.049	20.013	20.137	0	261	58	1.14997238118939	0.0379365683259716	1.14997238118939	464.212411254825	0	15.3139554874513						451	15	5	NaN	NaN	NaN	1.8325E-08	1	26097	137.58	121.29	1	412680			6874	1780	5845	5998	6874	6874		
GALTTVEGLITR	12	Unmodified	_GALTTVEGLITR_			0	0	0	O75312	O75312	O75312	ZPR1	Zinc finger protein ZPR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.856252	1229.69795	0.77204	0.00047547	-1.3494	-0.00083107	-0.57741	-0.0003556	615.855395962985	14.382	0.14185	14.382	14.32	14.462	0	558	34	0.951016745717027	0.0222561395374655	0.951016745717027	385.187246842291	0	9.01433245248558						286	17	3	NaN	NaN	NaN	0.0051401	1	10308	40.533	14.677	1	92490			6875	317	5846	5999	6875	6875		
GALVTVGQLSCYDQAK	16	Unmodified	_GALVTVGQLSCYDQAK_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.429987	1708.84542	1.7425	0.0014906	0.95257	0.00081485	2.6951	0.0023054	855.430916689464	11.536	0.079917	11.536	11.5	11.58	0	243	46	1.16194328902838	0.0299252192547748	1.16194328902838	469.150354183963	0	12.0827129387271						252	10	3	NaN	NaN	NaN	1.997E-08	1	24723	119.43	106.85	1	55956			6876	3194	5847	6000	6876	6876		
GALVTVGQLSCYDQAK	16	Unmodified	_GALVTVGQLSCYDQAK_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.429987	1708.84542	2.0321	0.0017383	3.0812	0.0026358	5.1133	0.0043741	855.433566900317	11.536	0.18628	11.536	11.474	11.66	0	318	52	1.11199926528787	0.0340133727588399	1.11199926528787	448.984769861799	0	13.7333600992964						267	22	2	NaN	NaN	NaN	6.2743E-07	1	24724	121.69	107.89	1	98463			6877	3194	5847	6000	6877	6877		
GALVVVNDLGGDFK	14	Unmodified	_GALVVVNDLGGDFK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.380091	1402.74563	1.2218	0.00085819	-0.53901	-0.00037859	0.68283	0.00047961	702.379954212951	14.143	0.22167	14.143	14.019	14.24	0	468	52	1.01159370163332	0.034239256244545	1.01159370163332	409.16095293658	0	13.8488077676227						343	26	2	NaN	NaN	NaN	0.043967	1	15556	42.061	20.973	1	164640			6878	1195	5848	6001	6878	6878		
GALWILGEYCSTK	13	Unmodified	_GALWILGEYCSTK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.373952	1496.73335	0.52942	0.00039674	-0.1233	-9.2399E-05	0.40612	0.00030434	749.374403744859	15.899	0.2749	15.899	15.783	16.058	0	435	58	1.03374239103424	0.0382146049252179	1.03374239103424	417.863058051467	0	15.4472447050412						659	32	5	NaN	NaN	NaN	0.00029536	1	18445	62.271	51.484	1	164040			6879	1240	5849	6002	6879	6879		
GALYCELCYEK	11	Unmodified	_GALYCELCYEK_			0	0	0	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.309963	1404.60537	1.1062	0.00077801	2.3296	0.0016384	3.4358	0.0024164	703.311677736394	9.5228	0.097521	9.5228	9.4785	9.576	0	456	28	1.01965166402748	0.0181266605748145	1.01965166402748	412.414827950765	0	7.33162497156735						222	12	4	NaN	NaN	NaN	0.062431	1	15594	28.647	24.754	1	59824			6880	2548	5850	6003	6880	6880		
GANDFMCDEMER	12	Unmodified	_GANDFMCDEMER_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.773419	1473.53228	1.787	0.0013184	-1.302	-0.00096061	0.48498	0.0003578	737.773955929877	8.9109	0.28391	8.9109	8.8576	9.1415	0	462	52	1.01562323939346	0.034239256244545	1.01562323939346	410.59809056545	0	13.8423114902208						1127	33	6	NaN	NaN	NaN	1.5897E-05	1	17686	131.54	131.22	1	805090			6881	747	5851	6004	6881	6881		
GANDFMCDEMER	12	Oxidation (M)	_GANDFMCDEM(Oxidation (M))ER_	GANDFM(0.001)CDEM(0.999)ER	GANDFM(-31)CDEM(31)ER	0	1	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.770876	1489.5272	1.2571	0.00093751	0.36557	0.00027263	1.6227	0.0012101	745.771741700664	6.3653	0.10638	6.3653	6.321	6.4274	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	400.776869291591	0	6.52553878108972						235	13	4	NaN	NaN	NaN	0.0088979	1	18202	60.547	59.045	2	53339			6882	747	5851	6005	6882	6882	247;248	
GANDFMCDEMER	12	Oxidation (M)	_GANDFM(Oxidation (M))CDEMER_	GANDFM(1)CDEMER	GANDFM(51)CDEM(-51)ER	0	1	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.770876	1489.5272	1.3384	0.0009981	0.41125	0.0003067	1.7496	0.0013048	745.771438336278	5.8775	0.10641	5.8775	5.8332	5.9396	0	465	28	1.01360860968299	0.0181341741775967	1.01360860968299	409.742666667274	0	7.33058580437779						251	13	4	NaN	NaN	NaN	0.0015983	1	18203	86.243	78.241	2	58841			6883	747	5851	6005	6883	6883	247;248	
GANIQLLDLPGIIEGAAQGK	20	Unmodified	_GANIQLLDLPGIIEGAAQGK_			0	0	0	P55039	P55039	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.552022	1977.08949	1.5824	0.0015658	-1.4861	-0.0014706	0.096271	9.5265E-05	990.052278730783	19.862	0.070945	19.862	19.818	19.889	0	198	40	1.1918274123006	0.0258746838681829	1.1918274123006	480.690820075915	0	10.435842370661						206	9	4	NaN	NaN	NaN	1.4113E-05	1	31239	54.556	53.188	1	46376			6884	1263	5852	6006	6884	6884		
GANLEEVNDEGYTPLMEAAR	20	Unmodified	_GANLEEVNDEGYTPLMEAAR_			0	0	0	Q8IWZ3	Q8IWZ3	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.00223	2177.98991	1.6792	0.0018304	2.291	0.0024972	3.9702	0.0043276	1091.0104330803	12.946	0.16848	12.946	12.884	13.052	0	117	49	1.24546401832526	0.0317476087598902	1.24546401832526	502.000503746541	0	12.7962874524817						298	20	3	NaN	NaN	NaN	1.8461E-06	1	34417	89.923	84.02	1	54058			6885	2207	5853	6007	6885	6885		
GANPVEIR	8	Unmodified	_GANPVEIR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.237784	854.461016	-0.34528	-0.00014786	-0.33356	-0.00014284	-0.67885	-0.00029071	428.237688131659	4.3435	0.32808	4.3435	4.2549	4.5829	0	798	52	0.788241307691771	0.0347848332569718	0.788241307691771	320.810288323357	0	14.1572539748357						703	38	3	NaN	NaN	NaN	0.036908	1	1629	34.931	22.104	1	357650			6886	635	5854	6008	6886	6886		
GANTHLSTFSFTK	13	Unmodified	_GANTHLSTFSFTK_			0	0	0	A0FGR8	A0FGR8	A0FGR8	ESYT2	Extended synaptotagmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.854241	1409.69393	2.4453	0.001726	-4.6064	-0.0032514	-2.1611	-0.0015254	705.849993250876	7.7576	0.10645	7.7576	7.7044	7.8108	0	459	34	1.01763759082241	0.0221548084259287	1.01763759082241	411.585745532903	0	8.96056064099918						179	13	3	NaN	NaN	NaN	0.038307	1	15747	46.068	39.805	1	42149			6887	4	5855	6009	6887	6887		
GAPAEDPVFTILAPEDPPVPFR	22	Unmodified	_GAPAEDPVFTILAPEDPPVPFR_			0	0	0	Q9UFG5	Q9UFG5	Q9UFG5	C19orf25	UPF0449 protein C19orf25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1168.10208	2334.1896	0.011024	1.2877E-05	0.45604	0.00053271	0.46707	0.00054558	1168.60511054539	19.33	0.05319	19.33	19.304	19.357	0	84	25	1.26725910986255	0.0158390376691195	1.26725910986255	510.568618334586	0	6.38142232755303						76	7	2	NaN	NaN	NaN	0.016444	1	35932	25.185	18.504	1	16251			6888	3201	5856	6010	6888	6888		
GAPGVSVDMNITYMSPAK	18	Unmodified	_GAPGVSVDMNITYMSPAK_			0	0	0	Q9NPJ3	Q9NPJ3	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.444779	1836.87501	2.0425	0.001878	2.0825	0.0019147	4.125	0.0037927	919.947909172556	13.194	0.30151	13.194	13.043	13.345	0	267	97	1.14597988355104	0.0638449163175709	1.14597988355104	462.445342728147	0	25.7637892529498						942	35	3	NaN	NaN	NaN	0.042487	1	28151	32.61	19.265	1	211190			6889	2991	5857	6011	6889	6889		
GAPPSSNIEDFHGLLPK	17	Unmodified	_GAPPSSNIEDFHGLLPK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.640576	1777.8999	-0.32128	-0.00019072	-0.32287	-0.00019167	-0.64415	-0.00038239	593.97484832495	11.953	0.41682	11.953	11.793	12.21	0	651	43	0.888155670855968	0.0284578263810398	0.888155670855968	537.736860604423	0	17.2298874171662						1150	48	4	NaN	NaN	NaN	0.0020766	1	26621	66.619	53.936	1	501150			6890	1062	5858	6012	6890	6890		
GAPVGGHILSYLLEK	15	Unmodified	_GAPVGGHILSYLLEK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.627719	1552.86133	-0.70907	-0.00036775	-1.9334	-0.0010027	-2.6425	-0.0013705	518.626725906093	14.48	0.088685	14.48	14.435	14.524	0	747	25	0.822982596624503	0.0163295196874556	0.822982596624503	498.835335630544	0	9.89782951351287						211	11	4	NaN	NaN	NaN	0.024071	1	20158	37.504	26.148	1	64694			6891	54	5859	6013	6891	6891		
GAQAAIVVYDITNEESFAR	19	Unmodified	_GAQAAIVVYDITNEESFAR_			0	0	0	P20339	P20339	P20339	RAB5A	Ras-related protein Rab-5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.51309	2053.01163	0.83785	0.0008609	-0.29238	-0.00030042	0.54547	0.00056047	1027.5127898995	15.571	0.088669	15.571	15.535	15.624	0	66	55	1.27913350869533	0.0356232085192938	1.27913350869533	515.770302838301	0	14.3639369316564						339	11	4	NaN	NaN	NaN	6.387E-07	1	32583	77.696	76.602	1	66176			6892	779	5860	6014	6892	6892		
GAQAAIVVYDITNQETFAR	19	Unmodified	_GAQAAIVVYDITNQETFAR_			0	0	0	P61020	P61020	P61020	RAB5B	Ras-related protein Rab-5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.02891	2066.04327	0.097068	0.00010037	1.8463	0.0019091	1.9433	0.0020094	1034.53238727824	15.304	0.062057	15.304	15.278	15.34	0	63	31	1.28111162701928	0.0197825394975926	1.28111162701928	516.546021110658	0	7.97634792271856						149	8	3	NaN	NaN	NaN	6.2616E-07	1	32816	98.865	97.155	1	27467			6893	1323	5861	6015	6893	6893		
GAQAAIVVYDITNTDTFAR	19	Unmodified	_GAQAAIVVYDITNTDTFAR_			0	0	0	P51148	P51148	P51148	RAB5C	Ras-related protein Rab-5C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.01285	2025.01672	0.1387	9.3763E-05	-0.23237	-0.00015709	-0.093673	-6.3324E-05	676.346386546452	15.704	0.15075	15.704	15.668	15.819	0	558	46	0.951016745717027	0.0303450838148018	0.951016745717027	575.252794237886	0	18.3551912565813						334	18	4	NaN	NaN	NaN	0.0016423	1	32062	78.157	76.447	1	58247			6894	1179	5862	6016	6894	6894		
GAQAAIVVYDITNTDTFAR	19	Unmodified	_GAQAAIVVYDITNTDTFAR_			0	0	0	P51148	P51148	P51148	RAB5C	Ras-related protein Rab-5C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.51564	2025.01672	0.35813	0.00036297	0.01633	1.655E-05	0.37446	0.00037952	1014.01753070214	15.712	0.21282	15.712	15.668	15.881	0	78	58	1.27121832677567	0.0376203035311353	1.27121832677567	512.626352899378	0	15.1706112065334						836	25	6	NaN	NaN	NaN	5.7128E-07	1	32063	83.061	70.685	1	226280			6895	1179	5862	6016	6895	6895		
GAQVEEIWSLEPENFEK	17	Unmodified	_GAQVEEIWSLEPENFEK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.98109	2003.94764	1.1682	0.0011717	1.0139	0.0010169	2.1821	0.0021886	1003.4834627262	15.908	0.23942	15.908	15.801	16.041	0	186	76	1.1997861197946	0.0497590341763592	1.1997861197946	483.855521459329	0	20.0670628135259						1266	28	5	NaN	NaN	NaN	1.1614E-10	1	31699	146.34	122.54	1	330980			6896	3434	5863	6017	6896	6896		
GASGSFVVVQK	11	Unmodified	_GASGSFVVVQK_			0	0	0	Q5SSJ5	Q5SSJ5	Q5SSJ5	HP1BP3	Heterochromatin protein 1-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.798206	1077.58186	1.2543	0.00067708	1.0651	0.00057494	2.3194	0.001252	539.798756482562	6.117	0.12413	6.117	6.0815	6.2057	0	621	13	0.908462957275599	0.00811615829336154	0.908462957275599	368.527815476348	0	3.29240731496918						64	15	2	NaN	NaN	NaN	0.017459	1	6156	34.953	22.886	1	20836			6897	1980	5864	6018	6897	6897		
GATELTHEDYMEGILEVQAK	20	Unmodified	_GATELTHEDYMEGILEVQAK_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1117.53591	2233.05726	0.42891	0.00047932	0.051109	5.7116E-05	0.48002	0.00053644	1118.03735971475	13.354	0.044371	13.354	13.336	13.38	0	66	31	1.27913350869533	0.0197825394975926	1.27913350869533	515.490852117343	0	7.97236416162713						72	6	2	NaN	NaN	NaN	0.067621	1	35014	7.6476	7.2833	1	14088			6898	746	5865	6019	6898	6898		
GATGEPEVMEPALEGTGK	18	Unmodified	_GATGEPEVMEPALEGTGK_			0	0	0	Q9H6R4	Q9H6R4	Q9H6R4	NOL6	Nucleolar protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.922191	1771.82983	2.1357	0.0018942	-0.25568	-0.00022676	1.88	0.0016674	887.423959678364	9.3544	0.12419	9.3544	9.3011	9.4253	0	357	49	1.08596037261705	0.0320721644177464	1.08596037261705	438.345799592006	0	12.9458670047631						409	15	3	NaN	NaN	NaN	0.00011378	1	26454	66.485	58.111	1	92644			6899	2906	5866	6020	6899	6899		
GATLALTQVTPQDER	15	Unmodified	_GATLALTQVTPQDER_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.420476	1598.8264	1.8012	0.0014417	3.6938	0.0029566	5.4949	0.0043983	800.923754490334	9.4962	0.2128	9.4962	9.3987	9.6115	0	387	112	1.06589869032374	0.0741925348413925	1.06589869032374	430.609217879706	0	29.9728198285539						697	25	2	NaN	NaN	NaN	3.1803E-12	1	21546	199.51	169.16	1	571200			6900	1061	5867	6021	6900	6900		
GAVAEDGDELRTEPEAK	17	Unmodified	_GAVAEDGDELRTEPEAK_			0	0	1	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.92632	1785.83809	3.3725	0.0030147	-1.8269	-0.0016331	1.5455	0.0013816	893.924613499373	4.7869	0.11527	4.7869	4.7514	4.8667	0	291	67	1.12999890578964	0.0439900595080689	1.12999890578964	456.094091781209	0	17.7554209441589						647	14	4	NaN	NaN	NaN	0.00080409	1	26843	85.081	71.222	1	155620			6901	866	5868	6022	6901	6901		
GAVAEDGDELRTEPEAK	17	Unmodified	_GAVAEDGDELRTEPEAK_			0	0	1	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.286639	1785.83809	1.3049	0.0007781	1.811	0.0010799	3.1159	0.001858	596.287679381877	4.778	0.23053	4.778	4.7425	4.9731	0	651	67	0.888155670855968	0.0446946456670176	0.888155670855968	537.718374596564	0	27.0595944042963						727	27	4	NaN	NaN	NaN	0.00032835	1	26844	68.108	48.218	1	192210			6902	866	5868	6022	6902	6902		
GAVDDDVAEADIISTVEFNHSGELLATGDK	30	Unmodified	_GAVDDDVAEADIISTVEFNHSGELLATGDK_			0	0	0	P63151	P63151	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1030.15795	3087.45203	1.286	0.0013248	0.65149	0.00067114	1.9375	0.0019959	1030.49315756994	17.255	0.15075	17.255	17.202	17.353	0	351	43	1.08996939197032	0.0280592752418065	1.08996939197032	657.756856913846	0	16.9327513472356						461	18	5	NaN	NaN	NaN	1.4975E-06	1	38341	45.422	45.122	1	93887			6903	1428	5869	6023	6903	6903		
GAVDGGLSIPHSTK	14	Unmodified	_GAVDGGLSIPHSTK_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.854241	1337.69393	2.5289	0.001694	-0.040471	-2.711E-05	2.4885	0.0016669	669.85437000169	6.2323	0.49658	6.2323	6.1081	6.6047	0	444	121	1.02770517576159	0.0806243198441453	1.02770517576159	415.874854720597	0	32.6257258335626						2312	57	5	NaN	NaN	NaN	7.1306E-05	1	13530	93.162	68.341	1	2428800			6904	1086	5870	6024	6904	6904		
GAVEAELDPVEYTLR	15	Unmodified	_GAVEAELDPVEYTLR_			0	0	0	O75817	O75817	O75817	POP7	Ribonuclease P protein subunit p20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.422684	1660.83082	2.9426	0.0024465	1.2459	0.0010359	4.1885	0.0034824	831.925057182675	13.93	0.20394	13.93	13.859	14.063	0	333	82	1.10198982404297	0.0540659173339781	1.10198982404297	445.046805727835	0	21.8349237744811						1054	24	5	NaN	NaN	NaN	0.00018159	1	23371	62.454	58.208	1	245720			6905	360	5871	6025	6905	6905		
GAVEALAAALAHISGATSVDQR	22	Unmodified	_GAVEALAAALAHISGATSVDQR_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.55837	2107.10218	-0.038678	-4.0788E-05	0.44856	0.00047303	0.40988	0.00043224	1055.06014656922	19.117	0.062091	19.117	19.091	19.153	0	69	43	1.27715511956461	0.0277069358040583	1.27715511956461	514.883763369596	0	11.1700224661015						199	8	3	NaN	NaN	NaN	0.0027535	1	33428	24.172	13.846	1	41485			6906	3011	5872	6026	6906	6906		
GAVEALAAALAHISGATSVDQR	22	Unmodified	_GAVEALAAALAHISGATSVDQR_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.37467	2107.10218	0.4709	0.00033122	-0.00039166	-2.7549E-07	0.47051	0.00033094	703.709290331284	19.117	0.19507	19.117	19.073	19.268	0	459	43	1.01763759082241	0.0282028744341156	1.01763759082241	615.387387281358	0	17.0548861091194						710	23	6	NaN	NaN	NaN	3.3871E-08	1	33429	134.49	126.13	1	540230			6907	3011	5872	6026	6907	6907		
GAVGALLVYDIAK	13	Unmodified	_GAVGALLVYDIAK_			0	0	0	Q15907;P62491	Q15907	Q15907	RAB11B;RAB11A	Ras-related protein Rab-11B;Ras-related protein Rab-11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.37682	1288.73909	1.1112	0.00071715	1.7103	0.0011038	2.8215	0.0018209	645.377747174586	15.18	0.070932	15.18	15.145	15.216	-1.7764E-15	459	40	1.01763759082241	0.0261829569110703	1.01763759082241	411.960778604722	0	10.5994033755587						210	9	4	NaN	NaN	NaN	0.00044952	1	12034	53.028	30.984	1	78958			6908	1875	5873	6027	6908	6908		
GAVIVVSHDAR	11	Unmodified	_GAVIVVSHDAR_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.314554	1122.61456	2.6576	0.0014944	-2.1776	-0.0012245	0.47995	0.00026988	562.313176811292	3.7317	0.21279	3.7317	3.6519	3.8647	0	588	31	0.93076847747433	0.0202651042983174	0.93076847747433	377.385064240557	0	8.21659507444269						390	25	4	NaN	NaN	NaN	0.0035313	1	7345	74.269	56.873	1	116330			6909	2308	5874	6028	6909	6909		
GAVLVCDMSSNFLSK	15	Unmodified	_GAVLVCDMSSNFLSK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.394558	1626.77456	2.1404	0.0017432	0.46643	0.00037986	2.6069	0.002123	814.394898168586	14.054	0.22168	14.054	14.001	14.223	0	366	67	1.07994477139643	0.0440992380067871	1.07994477139643	436.219285402044	0	17.8128906214537						871	26	6	NaN	NaN	NaN	6.2449E-09	1	22378	126.21	116.47	1	596960			6910	3450	5875	6029	6910	6910		
GAVTDDEVIRK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))GAVTDDEVIRK_			1	0	1	Q6I9Y2	Q6I9Y2	Q6I9Y2	THOC7	THO complex subunit 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.827692	1243.64083	1.337	0.0008327	-1.7584	-0.0010952	-0.42144	-0.00026248	622.826709377775	6.3033	0.1508	6.3033	6.2234	6.3742	0	570	37	0.942920803299286	0.0242911943445451	0.942920803299286	381.860641482138	0	9.83735964072378						223	18	2	NaN	NaN	NaN	0.017894	1	10739	50.297	33.839	1	62645			6911	2034	5876	6030	6911	6911		
GAVTGHEECVDALLQHGAK	19	Unmodified	_GAVTGHEECVDALLQHGAK_			0	0	0	O15084	O15084	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.658301	1990.95307	1.3446	0.00089371	0.83648	0.00055597	2.1811	0.0014497	664.993303440263	7.8729	0.088674	7.8729	7.8285	7.9172	0	546	37	0.959108205975751	0.0242643069631547	0.959108205975751	580.214680423233	0	14.6787474266215						219	11	4	NaN	NaN	NaN	3.481E-05	1	31473	59.77	56.686	1	61570			6912	142	5877	6031	6912	6912		
GAVVGIDLGTTNSCVAVMEGK	21	Unmodified	_GAVVGIDLGTTNSCVAVMEGK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.51646	2077.01838	1.7298	0.0017982	-0.78692	-0.00081802	0.94291	0.00098017	1040.01785418813	14.125	0.20393	14.125	14.072	14.276	0	180	61	1.203763835057	0.039766253926607	1.203763835057	485.342168699868	0	16.0332445283133						1002	24	6	NaN	NaN	NaN	2.2979E-37	1	32972	164.28	155.91	1	328970			6913	1007	5878	6032	6913	6913		
GAVVGIDLGTTNSCVAVMEGK	21	Unmodified	_GAVVGIDLGTTNSCVAVMEGK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.51646	2077.01838	-0.044382	-4.6136E-05	1.2185	0.0012667	1.1741	0.0012205	1039.51699638148	14.116	0.044341	14.116	14.099	14.143	0	66	28	1.27913350869533	0.0178030665835265	1.27913350869533	515.730249414952	0	7.17796845056307						83	6	3	NaN	NaN	NaN	0.0014573	1	32973	46.206	45.331	1	11159			6914	1007	5878	6032	6914	6914		
GAVVGIDLGTTNSCVAVMEGK	21	Oxidation (M)	_GAVVGIDLGTTNSCVAVM(Oxidation (M))EGK_	GAVVGIDLGTTNSCVAVM(1)EGK	GAVVGIDLGTTNSCVAVM(110)EGK	0	1	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.51392	2093.01329	0.95669	0.0010021	-0.041775	-4.376E-05	0.91492	0.00095839	1048.01480375285	11.961	0.11529	11.961	11.917	12.032	0	132	70	1.23554629282893	0.0456841643315047	1.23554629282893	498.13116323322	0	18.4183353160211						420	14	3	NaN	NaN	NaN	1.7831E-28	1	33232	114.35	110.5	1	73492			6915	1007	5878	6033	6915	6915	360	
GAVYSFDPVGSYQR	14	Unmodified	_GAVYSFDPVGSYQR_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.370255	1544.72596	2.0257	0.0015666	0.09135	7.0647E-05	2.1171	0.0016373	773.370195690702	11.225	0.30154	11.225	11.092	11.394	0	432	58	1.035754240522	0.0382146049252179	1.035754240522	418.55709823489	0	15.442846885793						877	35	4	NaN	NaN	NaN	1.0861E-09	1	19873	165.39	143.35	1	329400			6916	781	5879	6034	6916	6916		
GAYIYNALIEFIR	13	Unmodified	_GAYIYNALIEFIR_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.919384	1541.82421	1.2727	0.00098245	-0.52763	-0.00040729	0.74511	0.00057516	771.918836299118	19.907	0.053215	19.907	19.889	19.942	0	393	97	1.0618830335572	0.0642063046111834	1.0618830335572	429.123141936364	0	25.946747707774						291	7	5	NaN	NaN	NaN	1.522E-05	1	19787	74.849	64.147	1	103760			6917	857	5880	6035	6917	6917		
GAYSVGPLHSDLEYTVTSQK	20	Unmodified	_GAYSVGPLHSDLEYTVTSQK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.023414	2151.04841	1.6793	0.0012058	-0.39026	-0.00028022	1.289	0.00092555	718.356806428258	11.012	0.19511	11.012	10.933	11.128	0	492	40	0.995464410099171	0.0262264093657728	0.995464410099171	601.898329887603	0	15.8575553641689						419	23	5	NaN	NaN	NaN	0.00060291	1	34036	73.305	67.1	1	99063			6918	1452;1818	5881	6036	6918	6918		
GCALQCAILSPAFK	14	Unmodified	_GCALQCAILSPAFK_			0	0	0	O95757;Q92598;P34932	O95757;Q92598;P34932	P34932	HSPA4L;HSPH1;HSPA4	Heat shock 70 kDa protein 4L;Heat shock protein 105 kDa;Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.389079	1534.7636	1.8308	0.0014067	-2.0802	-0.0015984	-0.24941	-0.00019165	768.388041234939	13.637	0.1862	13.637	13.575	13.762	0	444	82	1.02770517576159	0.0542974937279912	1.02770517576159	415.328356492216	0	21.943344612409						1084	22	5	NaN	NaN	NaN	9.8955E-17	1	19578	165.39	144.3	1	467430			6919	955;2415;450	5882	6037	6919	6919		
GCEVIQEIK	9	Unmodified	_GCEVIQEIK_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.276249	1074.53795	0.93258	0.00050199	2.3646	0.0012728	3.2972	0.0017748	538.779422327546	6.7377	0.19506	6.7377	6.6757	6.8707	0	651	43	0.888155670855968	0.0284538779010195	0.888155670855968	360.302821563658	0	11.5430355607421						266	23	3	NaN	NaN	NaN	0.037119	1	6070	36.211	21.675	1	65706			6920	621	5883	6038	6920	6920		
GCEVTPDVNISGQK	14	Unmodified	_GCEVTPDVNISGQK_			0	0	0	Q96AC1	Q96AC1	Q96AC1	FERMT2	Fermitin family homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.35903	1502.70351	1.2139	0.00091326	-0.044665	-3.3604E-05	1.1692	0.00087966	752.358598032078	7.0569	0.13306	7.0569	7.0126	7.1457	0	486	49	0.999498404980629	0.0322630489708209	0.999498404980629	404.006124441394	0	13.0410106833706						362	16	3	NaN	NaN	NaN	0.008277	1	18591	33.751	32.494	1	114510			6921	2472	5884	6039	6921	6921		
GCEVVVSGK	9	Unmodified	_GCEVVVSGK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.73676	933.458967	0.37651	0.00017611	1.7207	0.00080483	2.0972	0.00098094	467.737468409878	2.9868	0.18619	2.9868	2.9424	3.1286	0	765	34	0.810730346695089	0.0224702728223195	0.810730346695089	329.521651139913	0	9.13305075128733						319	22	3	NaN	NaN	NaN	0.012397	1	2935	39.01	26.183	1	116630			6922	819	5885	6040	6922	6922		
GCITIIGGGDTATCCAK	17	Unmodified	_GCITIIGGGDTATCCAK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.897139	1753.77973	2.4525	0.002153	-1.6558	-0.0014537	0.79666	0.00069938	877.895775879689	8.4406	0.079802	8.4406	8.4051	8.485	0	222	82	1.17589687683038	0.053843218853483	1.17589687683038	474.686429847488	0	21.735447922908						393	10	3	NaN	NaN	NaN	1.2403E-10	1	25993	123.92	110.12	1	65153			6923	484	5886	6041	6923	6923		
GCITIIGGGDTATCCAK	17	Unmodified	_GCITIIGGGDTATCCAK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.897139	1753.77973	3.268	0.002869	-2.1402	-0.0018789	1.1278	0.00099013	877.895941150776	8.4318	0.20394	8.4318	8.352	8.5559	0	351	100	1.08996939197032	0.0661716982680385	1.08996939197032	439.99919676614	0	26.7122125640215						1465	24	6	NaN	NaN	NaN	4.5192E-19	1	25994	193.34	179.54	1	815980			6924	484	5886	6041	6924	6924		
GCIVDANLSVLNLVIVK	17	Unmodified	_GCIVDANLSVLNLVIVK_			0	0	0	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.024054	1826.03356	1.3123	0.0011995	-1.2103	-0.0011062	0.10206	9.3281E-05	914.023167322528	19.516	0.20396	19.516	19.454	19.658	0	246	76	1.1599488233373	0.0498205830012763	1.1599488233373	468.103166070705	0	20.1053461749186						552	24	5	NaN	NaN	NaN	6.0054E-05	1	27884	115.35	112.63	1	161170			6925	1396	5887	6042	6925	6925		
GCLDEETSR	9	Unmodified	_GCLDEETSR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.72712	1065.43969	1.1457	0.00061149	0.27255	0.00014547	1.4183	0.00075696	533.727412793325	2.7828	0.18619	2.7828	2.7474	2.9336	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	344.656032023949	0	6.61323895975426						318	22	3	NaN	NaN	NaN	0.0083642	1	5848	53.878	42.229	1	72120			6926	1816	5888	6043	6926	6926		
GCNIENACYPLGICAER	17	Unmodified	_GCNIENACYPLGICAER_			0	0	0	P32320	P32320	P32320	CDA	Cytidine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.937327	1995.8601	1.9909	0.0019888	2.7668	0.0027639	4.7577	0.0047526	999.441968704166	11.181	0.15074	11.181	11.137	11.287	0	240	49	1.16393748060522	0.0319092676377801	1.16393748060522	469.411388985037	0	12.8688816134326						588	18	5	NaN	NaN	NaN	1.3897E-06	1	31553	87.727	85.885	1	123320			6927	937	5889	6044	6927	6927		
GCPVNTEPSGPTCEK	15	Unmodified	_GCPVNTEPSGPTCEK_			0	0	0	P53701	P53701	P53701	HCCS	Cytochrome c-type heme lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.853254	1631.69196	3.5411	0.0028926	-2.7682	-0.0022612	0.77292	0.00063137	816.851590530534	3.8026	0.12413	3.8026	3.7494	3.8736	0	447	49	1.02569221487577	0.0322007138420592	1.02569221487577	414.294659816478	0	13.0064200483957						423	15	4	NaN	NaN	NaN	1.0295E-11	1	22530	154.09	142.07	1	86738			6928	1244	5890	6045	6928	6928		
GCTALHYAVLADDYR	15	Unmodified	_GCTALHYAVLADDYR_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.906679	1723.7988	2.3154	0.001998	-0.89189	-0.00076962	1.4235	0.0012284	863.407792345287	9.9484	0.070932	9.9484	9.9218	9.9928	0	282	34	1.13599383354359	0.0219753573460744	1.13599383354359	458.640903150111	0	8.87222926977557						171	9	3	NaN	NaN	NaN	3.3911E-06	1	25150	83.214	75.249	1	33215			6929	2839	5891	6046	6929	6929		
GCTATLGNFAK	11	Unmodified	_GCTATLGNFAK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.279323	1138.54409	1.5417	0.00087917	0.86891	0.00049552	2.4106	0.0013747	570.279999774075	6.7909	0.25713	6.7909	6.7023	6.9594	0	636	67	0.898312834727904	0.044645084996483	0.898312834727904	364.163915887299	0	18.0985157385234						1411	30	5	NaN	NaN	NaN	2.0831E-05	1	7754	96.311	86.918	1	803900			6930	717	5892	6047	6930	6930		
GCVNPMINIEQLWR	14	Unmodified	_GCVNPMINIEQLWR_			0	0	0	Q12996	Q12996	Q12996	CSTF3	Cleavage stimulation factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.429267	1728.84398	1.9055	0.0016491	0.50049	0.00043314	2.406	0.0020822	865.428780486135	18.399	0.070927	18.399	18.355	18.426	0	345	31	1.09397730668811	0.0200395758714129	1.09397730668811	441.667057850983	0	8.09049736370065						138	9	3	NaN	NaN	NaN	0.00022767	1	25296	54.27	50.024	1	25835			6931	1617	5893	6048	6931	6931		
GCWDSIHVVEVQEK	14	Unmodified	_GCWDSIHVVEVQEK_			0	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.603245	1684.78791	0.89607	0.00050413	1.3867	0.00078015	2.2827	0.0012843	562.603948926045	10.055	0.15073	10.055	10.002	10.152	0	627	46	0.90440375274676	0.0304545980014471	0.90440375274676	547.808163549075	0	18.4467140390886						526	18	6	NaN	NaN	NaN	0.0029629	1	24042	76.255	59.968	1	265190			6932	1100	5894	6049	6932	6932		
GCYFVLDWLQK	11	Unmodified	_GCYFVLDWLQK_			0	0	0	Q9Y4W2	Q9Y4W2	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.852655	1427.69076	0.44733	0.00031977	-0.53433	-0.00038197	-0.087005	-6.2196E-05	714.852109651135	18.506	0.070994	18.506	18.47	18.541	0	486	22	0.999498404980629	0.0141180070903043	0.999498404980629	404.199787356459	0	5.70935924996166						126	9	3	NaN	NaN	NaN	0.0015227	1	16311	43.272	42.015	1	28114			6933	3415	5895	6050	6933	6933		
GDADMYDLPK	10	Unmodified	_GDADMYDLPK_			0	0	0	P50402	P50402	P50402	EMD	Emerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.750064	1123.48558	0.91398	0.00051434	0.75071	0.00042246	1.6647	0.0009368	562.750377590403	7.9527	0.1419	7.9527	7.9172	8.0591	0	636	34	0.898312834727904	0.0223364666145487	0.898312834727904	364.222311823598	0	9.05635452796986						276	17	4	NaN	NaN	NaN	0.015703	1	7354	36.24	25.538	1	80647			6934	1162	5896	6051	6934	6934		
GDADQASNILASFGLSAR	18	Unmodified	_GDADQASNILASFGLSAR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.29899	1791.87514	-1.0019	-0.00059945	0.032001	1.9146E-05	-0.96992	-0.0005803	598.298971717247	17.885	0.10638	17.885	17.841	17.947	0	660	22	0.882057989648486	0.0142298979470937	0.882057989648486	534.012799781555	0	8.61502047769181						161	13	3	NaN	NaN	NaN	0.0014312	1	27018	73.502	72.621	1	45365			6935	1062	5897	6052	6935	6935		
GDADQASNILASFGLSAR	18	Unmodified	_GDADQASNILASFGLSAR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.944847	1791.87514	1.6755	0.0015028	0.0045977	4.1239E-06	1.6801	0.001507	896.944879813466	17.876	0.35463	17.876	17.787	18.142	0	297	52	1.12600091227925	0.0339852945793708	1.12600091227925	454.468603472576	0	13.7169066185093						895	41	5	NaN	NaN	NaN	3.1633E-26	1	27020	215.61	203.59	1	491700			6936	1062	5897	6052	6936	6936		
GDAHECFVSPVAK	13	Unmodified	_GDAHECFVSPVAK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.832451	1415.65035	1.5502	0.0010988	-0.67792	-0.00048053	0.87229	0.00061831	708.833678995763	5.4164	0.18616	5.4164	5.3278	5.5139	0	504	40	0.987393073566096	0.0262372893807942	0.987393073566096	399.33694489795	0	10.6112947965989						408	22	4	NaN	NaN	NaN	0.0055488	1	15951	60	56.392	1	73656			6937	2083	5898	6053	6937	6937		
GDAMIMEETGK	11	Oxidation (M)	_GDAM(Oxidation (M))IMEETGK_	GDAM(1)IMEETGK	GDAM(46)IM(-46)EETGK	0	1	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.259939	1196.50532	1.2441	0.00074554	0.40416	0.0002422	1.6483	0.00098774	599.260154659563	4.512	0.16846	4.512	4.4765	4.645	0	660	46	0.882057989648486	0.0304841838877806	0.882057989648486	357.367091452147	0	12.3507119249722						338	20	4	NaN	NaN	NaN	0.0019889	1	9327	87.895	80.249	2	80856			6938	3319	5899	6054	6938	6938	643	
GDANSEVTVYYQSGTR	16	Unmodified	_GDANSEVTVYYQSGTR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.900105	1745.78566	2.3828	0.0020823	-1.4177	-0.0012389	0.96513	0.00084343	874.399936972402	7.1634	0.13299	7.1634	7.1191	7.2521	0	375	46	1.07392668217569	0.0300987514489623	1.07392668217569	433.538637319746	0	12.1507100110156						322	16	3	NaN	NaN	NaN	8.6653E-09	1	25769	112.95	106.92	1	80140			6939	240	5900	6055	6939	6939		
GDATVSYEDPPTAK	14	Unmodified	_GDATVSYEDPPTAK_			0	0	0	Q01844	Q01844	Q01844	EWSR1	RNA-binding protein EWS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.838453	1449.66235	1.888	0.0013703	0.99546	0.00072255	2.8834	0.0020929	725.837992670704	5.3898	0.42573	5.3898	5.2213	5.6471	0	489	58	0.997481546940468	0.0383309147863334	0.997481546940468	403.325490392149	0	15.4988681753531						1636	49	5	NaN	NaN	NaN	0.00015615	1	16963	110.52	91.266	1	637190			6940	1523	5901	6056	6940	6940		
GDCVECMACSDNTVR	15	Unmodified	_GDCVECMACSDNTVR_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.336588	1772.65862	3.1352	0.002782	-3.826	-0.003395	-0.69078	-0.00061295	887.334842683326	6.1081	0.070937	6.1081	6.0815	6.1525	0	357	28	1.08596037261705	0.0180468052044267	1.08596037261705	438.344220418384	0	7.28453169917503						173	9	3	NaN	NaN	NaN	2.3646E-07	1	26475	85.813	83.677	1	38406			6941	956	5902	6057	6941	6941		
GDDEEWNEVLNK	12	Unmodified	_GDDEEWNEVLNK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.320428	1446.6263	1.6101	0.0011662	0.033731	2.4432E-05	1.6438	0.0011906	724.320113871461	10.418	0.22169	10.418	10.365	10.587	0	531	55	0.969216233931596	0.0363562041234198	0.969216233931596	391.904364214317	0	14.7006979076667						378	26	4	NaN	NaN	NaN	1.7577E-05	1	16874	127.93	115.33	1	124260			6942	2841	5903	6058	6942	6942		
GDDGIFDDNFIEER	14	Unmodified	_GDDGIFDDNFIEER_			0	0	0	O60493	O60493	O60493	SNX3	Sorting nexin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.354999	1640.69544	1.384	0.0011368	0.17565	0.00014427	1.5597	0.001281	821.355282690161	14.639	0.1596	14.639	14.595	14.755	-1.7764E-15	393	40	1.0618830335572	0.0261071745349262	1.0618830335572	428.892925351166	0	10.5446476731327						504	19	5	NaN	NaN	NaN	9.3947E-08	1	22768	117.41	110.55	1	177820			6943	261	5904	6059	6943	6943		
GDDLLPAGTEDYIHIR	16	Unmodified	_GDDLLPAGTEDYIHIR_			0	0	0	P41567;O60739	P41567;O60739	P41567	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.631969	1783.87408	0.26498	0.00015783	-0.74985	-0.00044663	-0.48486	-0.0002888	595.631446301749	13.3	0.15965	13.3	13.23	13.389	0	639	52	0.896281965493857	0.0345295780335751	0.896281965493857	542.642906744994	0	20.9055088846877						711	19	5	NaN	NaN	NaN	4.3801E-05	1	26792	124.46	118.08	1	388080			6944	1037;277	5905	6060	6944	6944		
GDDLLPAGTEDYIHIR	16	Unmodified	_GDDLLPAGTEDYIHIR_			0	0	0	P41567;O60739	P41567;O60739	P41567	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.944315	1783.87408	2.2542	0.0020129	0.27672	0.0002471	2.5309	0.00226	892.942245011269	13.3	0.26607	13.3	13.132	13.398	0	237	163	1.16593139812432	0.10784229195744	1.16593139812432	470.601273759808	0	43.5280497994931						1851	31	4	NaN	NaN	NaN	3.7907E-05	1	26796	95.656	71.852	1	710170			6945	1037;277	5905	6060	6945	6945		
GDDLSTAILK	10	Unmodified	_GDDLSTAILK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.782222	1031.54989	0.80375	0.00041537	-1.3284	-0.00068649	-0.52464	-0.00027113	516.781710643617	9.7356	0.17736	9.7356	9.6204	9.7977	0	681	55	0.867820189810857	0.0366394639132938	0.867820189810857	352.238865894358	0	14.8715636802697						292	21	2	NaN	NaN	NaN	0.009967	1	5040	60.892	52.129	1	150210			6946	1265	5906	6061	6946	6946		
GDECELLGHSK	11	Unmodified	_GDECELLGHSK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.782427	1243.5503	2.2044	0.0013729	-0.16561	-0.00010314	2.0388	0.0012698	622.781766551753	4.2371	0.1596	4.2371	4.1928	4.3524	0	555	40	0.953040030838688	0.0263027118748081	0.953040030838688	385.958991221561	0	10.6519850301132						262	19	3	NaN	NaN	NaN	0.053394	1	10723	34.193	31.825	1	57513			6947	1131	5907	6062	6947	6947		
GDECQLVGPAQPSHWK	16	Unmodified	_GDECQLVGPAQPSHWK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.92286	1807.83117	2.7404	0.0024798	-2.1948	-0.0019861	0.54558	0.00049371	904.920318702001	7.4205	0.18616	7.4205	7.3231	7.5092	0	324	52	1.1079963157843	0.0340321108810946	1.1079963157843	447.171409992506	0	13.7348714891242						546	22	4	NaN	NaN	NaN	0.00024872	1	27414	58.508	55.423	1	125440			6948	1816	5908	6063	6948	6948		
GDECQLVGPAQPSHWK	16	Unmodified	_GDECQLVGPAQPSHWK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.617666	1807.83117	0.36831	0.00022232	1.371	0.00082755	1.7393	0.0010499	603.618563706593	7.4383	0.12413	7.4383	7.3674	7.4915	0	669	58	0.875957769340875	0.0386562019240377	0.875957769340875	530.28371221409	0	23.4015325553887						527	15	3	NaN	NaN	NaN	0.00019432	1	27416	92.747	80.729	1	110100			6949	1816	5908	6063	6949	6949		
GDEELDSLIK	10	Unmodified	_GDEELDSLIK_			0	0	0	Q71UI9;P0C0S5	Q71UI9	Q71UI9	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.782418	1117.55028	1.3795	0.00077221	0.41319	0.0002313	1.7927	0.0010035	559.782591055645	10.906	0.40789	10.906	10.826	11.234	0	636	76	0.898312834727904	0.0507788117430045	0.898312834727904	364.245758752421	0	20.5896722131098						1634	47	5	NaN	NaN	NaN	0.00058548	1	7200	100.84	74.613	1	1640400			6950	616	5909	6064	6950	6950		
GDEGIFEESFIEER	14	Unmodified	_GDEGIFEESFIEER_			0	0	0	Q9UMY4	Q9UMY4	Q9UMY4	SNX12	Sorting nexin-12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.873024	1655.7315	1.9556	0.001621	-0.25784	-0.00021371	1.6978	0.0014072	829.374355589025	14.515	0.097544	14.515	14.453	14.551	1.7764E-15	396	22	1.05987478976334	0.0140596464770344	1.05987478976334	428.049247367202	0	5.67823779834151						120	12	3	NaN	NaN	NaN	0.0020225	1	23204	54.199	47.059	1	20663			6951	3290	5910	6065	6951	6951		
GDEVIFGEFSWPK	13	Unmodified	_GDEVIFGEFSWPK_			0	0	0	Q6P1J9	Q6P1J9	Q6P1J9	CDC73	Parafibromin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.864274	1509.714	0.95615	0.00072272	0.709	0.00053591	1.6651	0.0012586	755.864967540667	17.592	0.062063	17.592	17.566	17.628	0	357	25	1.08596037261705	0.0160382885112604	1.08596037261705	438.93621339642	0	6.48254375205875						122	8	3	NaN	NaN	NaN	0.0022007	1	18786	55.754	50.603	1	22333			6952	2056	5911	6066	6952	6952		
GDFDENLNYPEQK	13	Unmodified	_GDFDENLNYPEQK_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.84681	1567.67907	2.354	0.0018475	-0.25784	-0.00020236	2.0962	0.0016452	784.846541363424	8.3874	0.28381	8.3874	8.2898	8.5736	0	423	55	1.04178812298108	0.0362108052293146	1.04178812298108	420.940683764715	0	14.6311910998581						1101	33	4	NaN	NaN	NaN	2.9847E-11	1	20575	187.85	181.98	1	402950			6953	3183	5912	6067	6953	6953		
GDFIALDLGGSSFR	14	Unmodified	_GDFIALDLGGSSFR_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.867348	1453.72014	0.73447	0.0005346	-0.17946	-0.00013062	0.55501	0.00040397	727.867139516678	16.103	0.088662	16.103	16.058	16.147	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.650140215458	0	8.14525404246956						209	11	4	NaN	NaN	NaN	0.00034529	1	17078	82.437	63.114	1	51573			6954	765	5913	6068	6954	6954		
GDFILVGDLMR	11	Unmodified	_GDFILVGDLMR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.326273	1234.63799	0.15765	9.7477E-05	4.2886	0.0026517	4.4462	0.0027492	618.328831720683	17.087	0.21281	17.087	17.007	17.22	0	564	136	0.946969335010767	0.0910732661031469	0.946969335010767	383.53087698695	0	36.8854706559306						1308	25	4	NaN	NaN	NaN	0.0020383	1	10466	59.645	46.372	1	393930			6955	1884	5914	6069	6955	6955		
GDFLASLENDIK	12	Unmodified	_GDFLASLENDIK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.33535	1320.65615	-0.36176	-0.00023925	1.2266	0.00081119	0.86484	0.00057195	661.335866198744	16.732	0.11528	16.732	16.688	16.803	0	489	34	0.997481546940468	0.0221885084340552	0.997481546940468	403.697691487343	0	8.98006550582346						304	14	3	NaN	NaN	NaN	2.0307E-07	1	12998	126.29	99.346	1	100270			6956	1082	5915	6070	6956	6956		
GDFLNYALSLMR	12	Unmodified	_GDFLNYALSLMR_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.355562	1398.69657	0.10846	7.5958E-05	-0.18653	-0.00013064	-0.078074	-5.4679E-05	700.355018221452	19.978	0.017719	19.978	19.969	19.986	0	468	19	1.01159370163332	0.0120886137418381	1.01159370163332	409.172514030212	0	4.88963945495283						30	3	2	NaN	NaN	NaN	0.0048078	1	15408	29.317	22.627	1	8534.7			6957	402	5916	6071	6957	6957		
GDFYTAHGEDALLAAR	16	Unmodified	_GDFYTAHGEDALLAAR_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.609276	1705.806	0.37871	0.00021571	1.7373	0.00098959	2.116	0.0012053	569.610035752294	10.019	0.079799	10.019	9.9839	10.064	0	657	31	0.884090832094921	0.0203270164952024	0.884090832094921	535.450612880703	0	12.3110805420316						166	10	3	NaN	NaN	NaN	0.00014747	1	24647	83.214	81.372	1	38896			6958	1063	5917	6072	6958	6958		
GDFYTAHGEDALLAAR	16	Unmodified	_GDFYTAHGEDALLAAR_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.910276	1705.806	2.1799	0.0018614	2.0687	0.0017665	4.2486	0.0036279	854.414840352733	10.01	0.16845	10.01	9.9396	10.108	0	300	31	1.12400150285141	0.0199954725049127	1.12400150285141	453.837345487052	0	8.07355874557811						267	20	4	NaN	NaN	NaN	0.0038006	1	24648	47.57	45.434	1	52784			6959	1063	5917	6072	6959	6959		
GDGEVLEEIVTK	12	Unmodified	_GDGEVLEEIVTK_			0	0	0	Q66PJ3	Q66PJ3	Q66PJ3	ARL6IP4	ADP-ribosylation factor-like protein 6-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.835182	1287.65581	0.71898	0.00046363	4.0544	0.0026144	4.7734	0.003078	645.338899286411	12.024	0.33697	12.024	11.908	12.245	0	528	73	0.971237000454584	0.0485286390232953	0.971237000454584	393.180356198944	0	19.6455731897556						835	39	3	NaN	NaN	NaN	0.034461	1	11996	51.531	33.195	1	279820			6960	2019	5918	6073	6960	6960		
GDGLVDVMWEYK	12	Unmodified	_GDGLVDVMWEYK_			0	0	0	O95400	O95400	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.331753	1410.64895	1.4321	0.0010115	-0.64489	-0.00045551	0.7872	0.00055603	706.331032475312	15.5	0.088738	15.5	15.464	15.553	0	471	31	1.00957851518677	0.0201560438819375	1.00957851518677	408.323533457046	0	8.15210202533427						241	11	4	NaN	NaN	NaN	0.0064885	1	15768	66.664	59.974	1	48987			6961	433	5919	6074	6961	6961		
GDGPICLVLAPTR	13	Unmodified	_GDGPICLVLAPTR_			0	0	0	P17844;Q92841	P17844;Q92841	Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.868837	1367.72312	1.5878	0.0010874	0.071532	4.899E-05	1.6593	0.0011364	684.869498027432	13.806	0.26605	13.806	13.708	13.974	0	510	52	0.983355730988811	0.0343292904819641	0.983355730988811	397.838898547776	0	13.8886942770322						1189	31	5	NaN	NaN	NaN	6.9986E-08	1	14435	147.19	135.83	1	1249500			6962	2435;743	5920	6075	6962	6962		
GDGPVQGIINFEQK	14	Unmodified	_GDGPVQGIINFEQK_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.259696	1500.75726	-2.4353	-0.0012207	0.55775	0.00027958	-1.8776	-0.00094115	501.259636190313	12.6	0.11528	12.6	12.556	12.671	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	482.884693292992	0	9.9187834646861						143	14	2	NaN	NaN	NaN	0.062317	1	18546	14.975	5.4607	1	41281			6963	479	5921	6076	6963	6963		
GDGPVQGIINFEQK	14	Unmodified	_GDGPVQGIINFEQK_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.385905	1500.75726	1.7808	0.001338	1.7701	0.00133	3.5508	0.002668	751.387489125781	12.609	0.67392	12.609	12.423	13.096	0	435	100	1.03374239103424	0.0663544732688883	1.03374239103424	417.852785813808	0	26.8213838835352						2572	77	6	NaN	NaN	NaN	8.2941E-34	1	18549	252.75	225.16	1	3917500			6964	479	5921	6076	6964	6964		
GDGPWYYYETIDK	13	Unmodified	_GDGPWYYYETIDK_			0	0	0	O43674	O43674	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.856646	1605.69874	2.1842	0.0017558	2.3569	0.0018946	4.5412	0.0036505	804.361078054311	13.575	0.2394	13.575	13.434	13.673	0	405	40	1.05384839605172	0.0261251880875029	1.05384839605172	425.725410940746	0	10.5538486143984						578	28	4	NaN	NaN	NaN	0.00037735	1	21766	58.476	52.778	1	159340			6965	217	5922	6077	6965	6965		
GDGTCHVTTASLDGESSHK	19	Unmodified	_GDGTCHVTTASLDGESSHK_			0	0	0	P98196	P98196	P98196	ATP11A	Probable phospholipid-transporting ATPase IH	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.621804	1957.84358	1.6343	0.0010682	0.07858	5.1362E-05	1.7129	0.0011196	653.621979235969	3.4124	0.062063	3.4124	3.3858	3.4479	0	612	22	0.914549654013882	0.0141983560762999	0.914549654013882	553.323595474865	0	8.59033230124794						137	8	4	NaN	NaN	NaN	1.5035E-05	1	30852	108.91	102.89	1	29400			6966	1493	5923	6078	6966	6966		
GDILVVATGQPEMVK	15	Unmodified	_GDILVVATGQPEMVK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.921266	1555.82798	2.0063	0.0015627	0.90117	0.00070194	2.9074	0.0022647	778.922578869928	12.281	0.16851	12.281	12.219	12.387	0	315	88	1.11400032671325	0.058078806509918	1.11400032671325	450.148467601186	0	23.4686517800952						943	20	4	NaN	NaN	NaN	5.0736E-07	1	20241	97.594	75.59	1	267580			6967	656	5924	6079	6967	6967		
GDILVVATGQPEMVK	15	Oxidation (M)	_GDILVVATGQPEM(Oxidation (M))VK_	GDILVVATGQPEM(1)VK	GDILVVATGQPEM(97)VK	0	1	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.918723	1571.82289	2.1197	0.001668	-0.042639	-3.3553E-05	2.077	0.0016345	786.91882918222	10.401	0.062054	10.401	10.374	10.436	0	306	34	1.12000185836644	0.0220025900053455	1.12000185836644	452.532961720094	0	8.89007205323242						157	8	4	NaN	NaN	NaN	3.9979E-05	1	20729	97.175	89.617	1	24891			6968	656	5924	6080	6968	6968	197	
GDINILLIGDPSVAK	15	Unmodified	_GDINILLIGDPSVAK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.935231	1523.85591	1.6151	0.0012323	-0.22646	-0.00017278	1.3887	0.0010595	762.934750505884	16.041	0.14186	16.041	15.978	16.12	0	384	106	1.06790610341098	0.0702401870702618	1.06790610341098	431.602437617859	0	28.3881100233702						911	17	4	NaN	NaN	NaN	1.7594E-05	1	19250	93.772	79.317	1	279560			6969	835	5925	6081	6969	6969		
GDINPNIPYPTR	12	Unmodified	_GDINPNIPYPTR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.848958	1355.68336	1.5415	0.0010465	-0.7793	-0.00052903	0.76224	0.00051745	679.349705686929	9.1681	0.27495	9.1681	9.0794	9.3544	0	525	67	0.973257487423603	0.0444415161017796	0.973257487423603	393.788416630577	0	17.9814226805585						665	32	4	NaN	NaN	NaN	0.0070669	1	14061	53.028	44.051	1	185030			6970	1163	5926	6082	6970	6970		
GDINVCIVGDPSTAK	15	Unmodified	_GDINVCIVGDPSTAK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.382505	1544.75046	2.8089	0.0021724	-1.2221	-0.00094513	1.5868	0.0012272	773.382290054982	9.8243	0.31917	9.8243	9.709	10.028	0	420	73	1.04379886199097	0.0482477806442474	1.04379886199097	421.807943694987	0	19.4973360122066						993	37	4	NaN	NaN	NaN	0.023174	1	19876	38.14	28.052	1	324680			6971	1757	5927	6083	6971	6971		
GDINVLLCGDPGTAK	15	Unmodified	_GDINVLLCGDPGTAK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.385048	1528.75554	2.139	0.0016371	6.6806	0.0051132	8.8196	0.0067504	765.891778286728	11.412	0.26615	11.412	11.323	11.589	0	423	67	1.04178812298108	0.0442210248347901	1.04178812298108	421.034481414635	0	17.8717493972406						726	31	3	NaN	NaN	NaN	0.003534	1	19386	69.327	55.528	1	347120			6972	1144	5928	6084	6972	6972		
GDIYFCTGYDPPMK	14	Unmodified	_GDIYFCTGYDPPMK_			0	0	0	Q9NRV9	Q9NRV9	Q9NRV9	HEBP1	Heme-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.360184	1662.70582	1.6097	0.0013398	0.86103	0.00071669	2.4707	0.0020565	832.360606462947	12.05	0.1064	12.05	12.015	12.121	0	381	40	1.06991323971056	0.0260855828537037	1.06991323971056	432.088407893839	0	10.5347588438936						328	13	4	NaN	NaN	NaN	0.00017425	1	23411	61.194	60.455	1	78595			6973	3026	5929	6085	6973	6973		
GDLDIAGPNLEGDFK	15	Unmodified	_GDLDIAGPNLEGDFK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.880652	1559.74675	2.202	0.0017195	-0.85501	-0.00066766	1.347	0.0010519	780.877123313778	13.531	0.20397	13.531	13.451	13.655	0	426	88	1.03977710643793	0.0583114895967316	1.03977710643793	420.146829441914	0	23.5621531984215						1098	24	5	NaN	NaN	NaN	0.0020689	1	20336	72.846	63.584	1	370460			6974	1584	5930	6086	6974	6974		
GDLEEYGQDLLHTVFK	16	Unmodified	_GDLEEYGQDLLHTVFK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.459798	1862.90504	0.5541	0.00051668	1.1125	0.0010374	1.6666	0.001554	932.962537533421	19.082	0.08869	19.082	19.046	19.135	0	168	40	1.21171599086077	0.0258391918744247	1.21171599086077	488.921093472633	0	10.4259793887168						362	11	5	NaN	NaN	NaN	7.3741E-05	1	28759	74.733	71.648	1	145660			6975	1067	5931	6087	6975	6975		
GDLENAFLNLVQCIQNK	17	Unmodified	_GDLENAFLNLVQCIQNK_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.335047	1974.98331	-0.70844	-0.0004671	-0.85157	-0.00056147	-1.56	-0.0010286	659.668412770102	20.066	0.044346	20.066	20.057	20.102	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	545.923565902405	0	11.053230308677						112	6	5	NaN	NaN	NaN	2.1301E-10	1	31201	145.95	137.57	1	48907			6976	558	5932	6088	6976	6976		
GDLENAFLNLVQCIQNK	17	Unmodified	_GDLENAFLNLVQCIQNK_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.498932	1974.98331	1.5258	0.0015083	0.58906	0.00058228	2.1149	0.0020906	989.001098955196	20.066	0.12415	20.066	20.022	20.146	0	213	124	1.18187287897418	0.0815265377200391	1.18187287897418	476.679469669669	0	32.8817315768538						820	15	7	NaN	NaN	NaN	1.2243E-70	1	31202	289.34	274.37	1	430400			6977	558	5932	6088	6977	6977		
GDLETLQPGDDVEFTIK	17	Unmodified	_GDLETLQPGDDVEFTIK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.962371	1875.91019	1.9827	0.0018617	0.72931	0.0006848	2.712	0.0025465	938.963863863727	14.196	0.27487	14.196	14.072	14.347	0	240	67	1.16393748060522	0.0438812859554019	1.16393748060522	469.618648006459	0	17.7049631329384						1019	32	5	NaN	NaN	NaN	0.0013531	1	29060	47.57	38.764	1	263770			6978	344	5933	6089	6978	6978		
GDLGIEIPAEK	11	Unmodified	_GDLGIEIPAEK_			0	0	0	P14618;P30613	P14618	P14618	PKM;PKLR	Pyruvate kinase PKM;Pyruvate kinase PKLR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.308603	1140.60265	1.1892	0.00067942	-0.043524	-2.4866E-05	1.1457	0.00065455	571.30900825199	10.649	0.36354	10.649	10.551	10.915	0	618	67	0.910492137470517	0.0446327077092752	0.910492137470517	369.093274460056	0	18.0931076266087						1478	42	5	NaN	NaN	NaN	1.8222E-07	1	7812	117.3	85.159	1	896360			6979	699	5934	6090	6979	6979		
GDLIGVVEALTR	12	Unmodified	_GDLIGVVEALTR_			0	0	0	Q8IY17	Q8IY17	Q8IY17	PNPLA6	Neuropathy target esterase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.856252	1241.69795	-0.16604	-0.00010325	-0.91856	-0.00057121	-1.0846	-0.00067447	621.856011977676	18.816	0.070955	18.816	18.781	18.851	0	600	25	0.922661313351899	0.0162165760860672	0.922661313351899	373.662442484719	0	6.56744283234951						123	9	2	NaN	NaN	NaN	0.010266	1	10681	39.293	26.697	1	40209			6980	2216	5935	6091	6980	6980		
GDLLEGANAYHCEK	14	Unmodified	_GDLLEGANAYHCEK_			0	0	0	O00507	O00507	O00507	USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.856654	1575.69876	2.057	0.0016227	0.086937	6.8581E-05	2.1439	0.0016912	788.856366634929	6.321	0.070953	6.321	6.3033	6.3742	0	315	28	1.11400032671325	0.0180070752591535	1.11400032671325	450.098393786933	0	7.2755415385364						128	9	3	NaN	NaN	NaN	1.4123E-05	1	20840	97.594	94.492	1	22746			6981	88	5936	6092	6981	6981		
GDLNDCFIPCTPK	13	Unmodified	_GDLNDCFIPCTPK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.844701	1535.67485	2.4842	0.0019099	0.90124	0.00069291	3.3854	0.0026028	768.844194107639	10.862	0.20394	10.862	10.8	11.004	0	435	52	1.03374239103424	0.0341920120016164	1.03374239103424	417.765960038758	0	13.8180061525975						751	24	5	NaN	NaN	NaN	0.00042144	1	19591	71.896	66.509	1	279270			6982	656	5937	6093	6982	6982		
GDLSGHFEHLMVALVTPPAVFDAK	24	Unmodified	_GDLSGHFEHLMVALVTPPAVFDAK_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.105303	2550.29408	-0.27511	-0.00023415	0.43026	0.00036619	0.15515	0.00013205	851.440485481692	19.295	0.12412	19.295	19.215	19.339	0	522	25	0.975277694896658	0.0161583079199887	0.975277694896658	589.100450187429	0	9.76016012643572						211	15	4	NaN	NaN	NaN	0.0064048	1	37032	27.94	26.102	1	34032			6983	669	5938	6094	6983	6983		
GDNSSVSSLCISPDGK	16	Unmodified	_GDNSSVSSLCISPDGK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.869959	1621.72536	2.5287	0.002053	-0.86137	-0.00069932	1.6673	0.0013537	811.869255919706	8.139	0.16858	8.139	8.068	8.2366	0	420	34	1.04379886199097	0.0221150800336967	1.04379886199097	421.630050598156	0	8.93312174704261						419	20	4	NaN	NaN	NaN	1.2766E-08	1	22233	107.6	106.55	1	92120			6984	1807	5939	6095	6984	6984		
GDPLGGVISNYLLEK	15	Unmodified	_GDPLGGVISNYLLEK_			0	0	0	O43795	O43795	O43795	MYO1B	Unconventional myosin-Ib	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.924863	1573.83517	0.85396	0.00067285	-2.867	-0.002259	-2.0131	-0.0015861	787.923732370596	17.406	0.1596	17.406	17.309	17.468	0	408	40	1.0518390438467	0.0261215838858069	1.0518390438467	424.987272228595	0	10.5542200081493						335	19	3	NaN	NaN	NaN	0.00025591	1	20794	47.57	44.468	1	73351			6985	230	5940	6096	6985	6985		
GDPQTQLEAMELYLAR	16	Unmodified	_GDPQTQLEAMELYLAR_			0	0	0	Q05932	Q05932	Q05932	FPGS	Folylpolyglutamate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.953826	1833.8931	0.86192	0.0007912	-1.887	-0.0017322	-1.0251	-0.00094097	918.454356300195	17.326	0.097534	17.326	17.291	17.388	0	288	22	1.13199748998575	0.0139900901673697	1.13199748998575	456.808508995116	0	5.64558869308428						160	12	4	NaN	NaN	NaN	0.00044455	1	28074	75.012	65.75	1	32157			6986	1555	5941	6097	6986	6986		
GDPQVYEELFSYSCPK	16	Unmodified	_GDPQVYEELFSYSCPK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.930016	1917.84548	1.3684	0.0013136	1.0018	0.00096169	2.3702	0.0022753	960.432629490344	15.163	0.097554	15.163	15.101	15.198	0	144	67	1.22760721615852	0.0437188805283268	1.22760721615852	495.228222827738	0	17.6366049523659						474	12	4	NaN	NaN	NaN	0.0013749	1	30005	53.363	52.844	1	111540			6987	3329	5942	6098	6987	6987		
GDPQVYEELFSYSCPK	16	Unmodified	_GDPQVYEELFSYSCPK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.930016	1917.84548	1.9403	0.0018626	1.7319	0.0016625	3.6723	0.0035251	960.433683517541	15.163	0.1774	15.163	15.083	15.26	0	261	52	1.14997238118939	0.0339292424240165	1.14997238118939	463.909602478267	0	13.6873733863371						732	21	5	NaN	NaN	NaN	1.245E-08	1	30007	124.24	123.35	1	267810			6988	3329	5942	6098	6988	6988		
GDQENVHPDVMLVQPR	16	Unmodified	_GDQENVHPDVMLVQPR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.449242	1832.88393	2.5481	0.0023377	-1.5996	-0.0014675	0.9485	0.0008702	917.44803878887	8.6357	0.13312	8.6357	8.5736	8.7068	0	294	67	1.12800004657306	0.043953756762201	1.12800004657306	455.197253076908	0	17.7372593213528						616	16	4	NaN	NaN	NaN	2.1091E-06	1	28050	128.46	124.96	1	138770			6989	1780	5943	6099	6989	6989		
GDQENVHPDVMLVQPR	16	Unmodified	_GDQENVHPDVMLVQPR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.968587	1832.88393	0.64999	0.00039777	0.70613	0.00043213	1.3561	0.0008299	612.303439701715	8.6357	0.21291	8.6357	8.547	8.7599	0	660	166	0.882057989648486	0.112008712561598	0.882057989648486	533.92113577621	0	67.8003257490498						2175	25	5	NaN	NaN	NaN	4.2624E-05	1	28051	115.35	106.09	1	700490			6990	1780	5943	6099	6990	6990		
GDQPAASGDSDDDEPPPLPR	20	Unmodified	_GDQPAASGDSDDDEPPPLPR_			0	0	0	O00264	O00264	O00264	PGRMC1	Membrane-associated progesterone receptor component 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.4456	2034.87666	2.9331	0.0029872	-1.7026	-0.001734	1.2304	0.0012531	1018.44395720436	7.2964	0.37248	7.2964	7.1545	7.527	0	267	70	1.14597988355104	0.0459484966240524	1.14597988355104	462.107963949409	0	18.5283934964742						1760	43	4	NaN	NaN	NaN	3.0369E-16	1	32236	157.54	152.72	1	370540			6991	68	5944	6100	6991	6991		
GDRSEDFGVNEDLADSDAR	19	Unmodified	_GDRSEDFGVNEDLADSDAR_			0	0	1	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.966516	2066.87772	0.76501	0.00052783	0.86234	0.00059498	1.6273	0.0011228	690.301542484828	8.1922	0.275	8.1922	8.139	8.414	0	669	82	0.875957769340875	0.0549554070918452	0.875957769340875	529.777971985802	0	33.2369494715243						1112	32	5	NaN	NaN	NaN	5.8459E-11	1	32821	171.14	151.25	1	683090			6992	506	5945	6101	6992	6992		
GDSDEEVIQDGVR	13	Unmodified	_GDSDEEVIQDGVR_			0	0	0	Q9BUE6	Q9BUE6	Q9BUE6	ISCA1	Iron-sulfur cluster assembly 1 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.823335	1417.63212	1.5359	0.0010902	0.47678	0.00033843	2.0127	0.0014286	709.823869659795	6.5338	0.10639	6.5338	6.4983	6.6047	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	396.88213534595	0	8.16637486098108						198	13	4	NaN	NaN	NaN	2.2393E-07	1	15998	103.87	98.377	1	44167			6993	2744	5946	6102	6993	6993		
GDSFTHTPPLDPQELDILK	19	Unmodified	_GDSFTHTPPLDPQELDILK_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.360026	2122.05825	0.052401	3.7119E-05	-1.3217	-0.00093623	-1.2693	-0.00089912	708.693551318653	15.216	0.10646	15.216	15.154	15.26	0	651	43	0.888155670855968	0.0284380921957725	0.888155670855968	537.062121152543	0	17.1963346261964						350	13	4	NaN	NaN	NaN	0.035799	1	33645	20.966	12.592	1	67788			6994	483	5947	6103	6994	6994		
GDSHLNVQVSNFK	13	Unmodified	_GDSHLNVQVSNFK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.244157	1443.71064	-0.50775	-0.00024486	1.3151	0.0006342	0.80735	0.00038934	482.244618113679	6.9683	0.23062	6.9683	6.8885	7.1191	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	499.168026116389	0	12.3805389352473						249	27	3	NaN	NaN	NaN	0.0039148	1	16774	62.271	40.228	1	77536			6995	2165	5948	6104	6995	6995		
GDSHLNVQVSNFK	13	Unmodified	_GDSHLNVQVSNFK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.862597	1443.71064	2.0082	0.0014516	1.4044	0.0010152	3.4125	0.0024668	722.864618472398	6.9771	0.17743	6.9771	6.9239	7.1014	0	438	43	1.03173026378327	0.0281795132980842	1.03173026378327	417.190002054393	0	11.3946557771898						339	21	3	NaN	NaN	NaN	0.00046322	1	16777	76.255	56.932	1	97635			6996	2165	5948	6104	6996	6996		
GDSLDSVEALIK	12	Unmodified	_GDSLDSVEALIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.8299	1245.64525	1.2968	0.000809	-5.8222	-0.0036321	-4.5254	-0.0028231	623.825977441256	14.453	0.15962	14.453	14.373	14.533	0	537	79	0.965173861991602	0.0526090972687659	0.965173861991602	390.865716039223	0	21.3050656300432						690	19	5	NaN	NaN	NaN	0.03425	1	10793	53.028	32.692	1	259810			6997	1703	5949	6105	6997	6997		
GDSVSDSGSDALR	13	Unmodified	_GDSVSDSGSDALR_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.283845	1264.55314	2.5878	0.0016388	1.614	0.0010221	4.2018	0.0026609	633.284444916331	3.98	0.23943	3.98	3.9002	4.1396	0	597	43	0.924688525662974	0.0283711492854036	0.924688525662974	374.408984804148	0	11.4875581418715						292	28	3	NaN	NaN	NaN	0.00011035	1	11344	87.942	70.472	1	70805			6998	1946	5950	6106	6998	6998		
GDTANEIGQVLHFENVK	17	Unmodified	_GDTANEIGQVLHFENVK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.31464	1869.92209	0.7564	0.00047223	0.18155	0.00011335	0.93795	0.00058558	624.648966048966	13.38	0.16852	13.38	13.309	13.478	0	606	43	0.918606045818476	0.0283947491785544	0.918606045818476	555.961513103336	0	17.1851554748185						575	20	5	NaN	NaN	NaN	9.752E-06	1	28931	82.437	69.218	1	305850			6999	994	5951	6107	6999	6999		
GDTANEIGQVLHFENVK	17	Unmodified	_GDTANEIGQVLHFENVK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.968322	1869.92209	1.7648	0.0016518	0.6201	0.00058039	2.3849	0.0022322	936.470274553516	13.38	0.18625	13.38	13.318	13.504	0	171	94	1.20972836110953	0.0616250475486122	1.20972836110953	488.105557720882	0	24.8646962163497						1184	22	5	NaN	NaN	NaN	4.0711E-26	1	28932	238.01	231.98	1	606110			7000	994	5951	6107	7000	7000		
GDVAEGDLIEHFSQFGTVEK	20	Unmodified	_GDVAEGDLIEHFSQFGTVEK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.683169	2177.02768	-0.43655	-0.00031723	0.76694	0.00055732	0.33039	0.00024009	727.017712277444	14.888	0.13299	14.888	14.852	14.985	0	624	46	0.906433495720521	0.0304334915876326	0.906433495720521	548.024683407273	0	18.3999208668174						374	16	4	NaN	NaN	NaN	0.00025226	1	34406	50.519	46.447	1	88971			7001	1635	5952	6108	7001	7001		
GDVAEGDLIEHFSQFGTVEK	20	Unmodified	_GDVAEGDLIEHFSQFGTVEK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.683169	2177.02768	0.47138	0.00034254	0.27655	0.00020097	0.74793	0.00054351	727.017687072779	14.888	0.14185	14.888	14.852	14.994	0	513	79	0.981336640919867	0.0525581496651012	0.981336640919867	593.310712995573	0	31.7763669990954						880	17	6	NaN	NaN	NaN	5.9119E-11	1	34407	131.48	120.72	1	344470			7002	1635	5952	6108	7002	7002		
GDVAEGDLIEHFSQFGTVEK	20	Unmodified	_GDVAEGDLIEHFSQFGTVEK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1089.52112	2177.02768	-0.10517	-0.00011459	1.4328	0.001561	1.3276	0.0014465	1090.0241946213	14.888	0.10638	14.888	14.852	14.959	0	63	70	1.28111162701928	0.0455279051952959	1.28111162701928	516.370186271701	0	18.3506670226337						642	13	5	NaN	NaN	NaN	0.0016811	1	34408	26.21	25.812	1	147440			7003	1635	5952	6108	7003	7003		
GDVDMSEVEHFMPILMEK	18	Unmodified	_GDVDMSEVEHFMPILMEK_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.989671	2105.94718	-0.66999	-0.000471	1.1949	0.00083998	0.52487	0.00036898	703.32431006081	18.328	0.070896	18.328	18.302	18.373	0	669	22	0.875957769340875	0.0142377998376291	0.875957769340875	529.712441457382	0	8.60993529248219						160	9	4	NaN	NaN	NaN	0.023306	1	33397	17.889	17.766	1	26466			7004	2787	5953	6109	7004	7004		
GDVEEDETIPDSEQDIRPR	19	Unmodified	_GDVEEDETIPDSEQDIRPR_			0	0	1	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.004859	2198.99275	1.8766	0.0013774	0.10114	7.4234E-05	1.9778	0.0014517	734.339184613721	7.7398	0.15086	7.7398	7.6865	7.8374	8.8818E-16	612	73	0.914549654013882	0.0487037344704411	0.914549654013882	552.896681974604	0	29.4441456188777						865	18	5	NaN	NaN	NaN	1.1249E-20	1	34663	146.58	139.9	1	285980			7005	2448	5954	6110	7005	7005		
GDVEMLCGGPPCQGFSGMNR	20	Unmodified	_GDVEMLCGGPPCQGFSGMNR_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.95265	2167.89075	1.109	0.0012033	-0.36111	-0.00039178	0.74794	0.00081147	1085.45363325563	11.846	0.062086	11.846	11.82	11.882	0	186	43	1.1997861197946	0.0278516583469064	1.1997861197946	483.603716971471	0	11.2263054874223						147	8	3	NaN	NaN	NaN	0.00051813	1	34274	62.711	61.44	1	22450			7006	849	5955	6111	7006	7006		
GDVGSADIQDLEK	13	Unmodified	_GDVGSADIQDLEK_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.825346	1345.63614	1.9207	0.0012942	0.99793	0.00067243	2.9186	0.0019667	673.826042332769	8.2366	0.11532	8.2366	8.1922	8.3076	0	480	43	1.00353128488872	0.0282262646321653	1.00353128488872	406.068047398606	0	11.4214517645165						443	14	4	NaN	NaN	NaN	1.9917E-05	1	13770	115.04	103.08	1	215570			7007	3439	5956	6112	7007	7007		
GDVLHMHYTGK	11	Unmodified	_GDVLHMHYTGK_			0	0	0	P26885	P26885	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.873007	1256.59719	-0.69287	-0.00029092	-0.58214	-0.00024442	-1.275	-0.00053534	419.872725023309	4.6893	0.088642	4.6893	4.6539	4.7425	0	861	22	0.745211914437924	0.0143631278163247	0.745211914437924	452.634624276381	0	8.72402713458939						164	11	3	NaN	NaN	NaN	0.026926	1	11105	37.749	31.883	1	44926			7008	860	5957	6113	7008	7008		
GDVPSVGLEGPDVDLQGPEAK	21	Unmodified	_GDVPSVGLEGPDVDLQGPEAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.01567	2078.01678	2.2691	0.0023599	-0.81551	-0.00084814	1.4536	0.0015118	1040.51645370628	12.972	0.12413	12.972	12.928	13.052	0	231	88	1.16991841121525	0.057760142809697	1.16991841121525	471.694622072096	0	23.2880758797098						872	15	5	NaN	NaN	NaN	1.8419E-07	1	32993	85.742	68.471	1	275260			7009	1584	5958	6114	7009	7009		
GDVSNLDPNFSFEGTK	16	Unmodified	_GDVSNLDPNFSFEGTK_			0	0	0	Q01650	Q01650	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.899574	1725.78459	2.1692	0.001874	0.4367	0.00037726	2.6059	0.0022513	863.899954958177	12.396	0.16847	12.396	12.343	12.511	0	375	73	1.07392668217569	0.0481547028314047	1.07392668217569	433.57821373671	0	19.4415786321314						798	20	5	NaN	NaN	NaN	7.3784E-34	1	25205	188.19	154	1	427380			7010	1518	5959	6115	7010	7010		
GDVTAQIALQPALK	14	Unmodified	_GDVTAQIALQPALK_			0	0	0	P04179	P04179	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.909016	1423.80348	2.4136	0.0017207	-1.2262	-0.00087419	1.1874	0.00084651	712.908155545698	11.314	0.13306	11.314	11.27	11.403	0	369	88	1.07793901817685	0.0582070107889854	1.07793901817685	435.932800308847	0	23.5396852539636						728	16	3	NaN	NaN	NaN	2.6507E-06	1	16210	110.88	107.78	1	205450			7011	509	5960	6116	7011	7011		
GDVTITNDGATILK	14	Unmodified	_GDVTITNDGATILK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.380288	1416.74602	2.4164	0.0017141	0.49512	0.00035123	2.9115	0.0020654	709.380980609534	9.8952	0.42559	9.8952	9.7889	10.214	0	465	73	1.01360860968299	0.0483478066560342	1.01360860968299	409.936369929977	0	19.5534293664392						1153	49	4	NaN	NaN	NaN	0.00021967	1	15990	88.24	84.504	1	1259400			7012	1175	5961	6117	7012	7012		
GDVVLQSDHVIETLTK	16	Unmodified	_GDVVLQSDHVIETLTK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.315869	1752.92578	-1.3579	-0.00079482	0.097748	5.7214E-05	-1.2602	-0.00073761	585.315857254263	12.564	0.11526	12.564	12.511	12.626	0	753	37	0.81889964927511	0.024501095294577	0.81889964927511	495.860164310107	0	14.8359046792863						347	14	4	NaN	NaN	NaN	1.959E-06	1	25982	88.42	78.169	1	125400			7013	54	5962	6118	7013	7013		
GDVVLQSDHVIETLTK	16	Unmodified	_GDVVLQSDHVIETLTK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.470166	1752.92578	1.6726	0.0014677	-0.51355	-0.00045062	1.1591	0.0010171	877.469650265806	12.556	0.15961	12.556	12.511	12.671	0	159	40	1.21767724410157	0.0258321022391843	1.21767724410157	491.554215678332	0	10.4279510987113						381	19	4	NaN	NaN	NaN	2.0281E-05	1	25984	78.888	70.923	1	119460			7014	54	5962	6118	7014	7014		
GDVVNQDDLYQALASGK	17	Unmodified	_GDVVNQDDLYQALASGK_			0	0	0	Q9UBQ7	Q9UBQ7	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.93923	1791.86391	2.0196	0.0018114	1.9598	0.0017578	3.9793	0.0035692	897.443418447934	13.371	0.26604	13.371	13.256	13.522	0	276	58	1.13998907770044	0.0379626683497278	1.13998907770044	460.114424083715	0	15.3222268757614						430	31	2	NaN	NaN	NaN	0.00027899	1	27016	62.494	61.755	1	207400			7015	3185	5963	6119	7015	7015		
GDWSVGAPGGVQEITYTVPADK	22	Unmodified	_GDWSVGAPGGVQEITYTVPADK_			0	0	0	Q96I24	Q96I24	Q96I24	FUBP3	Far upstream element-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1124.05004	2246.08553	1.6305	0.0018328	-1.113	-0.0012511	0.51748	0.00058167	1124.55047236041	13.797	0.088644	13.797	13.762	13.85	0	99	55	1.25735632164274	0.035676922009668	1.25735632164274	506.696473436207	0	14.3772853042478						439	11	5	NaN	NaN	NaN	1.2519E-08	1	35153	97.933	94.858	1	125540			7016	2554	5964	6120	7016	7016		
GDYPLEAVR	9	Unmodified	_GDYPLEAVR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.261456	1018.50836	1.0848	0.00055355	-0.95897	-0.00048932	0.12588	6.4231E-05	510.261134436598	7.7398	0.33706	7.7398	7.5979	7.935	0	705	67	0.851531465363931	0.0448251357627677	0.851531465363931	345.685718689178	0	18.1971070967646						1058	39	5	NaN	NaN	NaN	0.00015649	1	4703	101.41	86.877	1	690250			7017	699	5965	6121	7017	7017		
GEAAPGPAPPAPEATPPPASAAGK	24	Unmodified	_GEAAPGPAPPAPEATPPPASAAGK_			0	0	0	Q9NSI2	Q9NSI2	Q9NSI2	FAM207A	Protein FAM207A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.03419	2108.05383	2.5044	0.0026422	-0.76359	-0.00080561	1.7408	0.0018366	1055.53431966303	6.8175	0.0975	6.8175	6.7732	6.8707	0	174	16	1.20774045859593	0.00993951284878203	1.20774045859593	486.897879359656	0	4.00709249532497						85	12	3	NaN	NaN	NaN	0.00074851	1	33443	38.616	37.028	1	12330			7018	3038	5966	6122	7018	7018		
GEAGVPAEFSIWTR	14	Unmodified	_GEAGVPAEFSIWTR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.380623	1518.74669	0.86966	0.00066127	0.60997	0.00046381	1.4796	0.0011251	760.38060298372	14.888	0.1774	14.888	14.843	15.021	0	471	64	1.00957851518677	0.0423189375930296	1.00957851518677	408.041249131334	0	17.1040408424066						824	21	5	NaN	NaN	NaN	0.0014904	1	19095	72.846	62.059	1	307400			7019	326	5967	6123	7019	7019		
GEAHLAVNDFELAR	14	Unmodified	_GEAHLAVNDFELAR_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.595078	1540.76341	-0.9541	-0.00049097	-0.71641	-0.00036866	-1.6705	-0.00085963	514.59455889416	10.179	0.070945	10.179	10.161	10.232	0	756	37	0.816857749704129	0.024507911533163	0.816857749704129	495.157181009805	0	14.8560363069263						182	9	3	NaN	NaN	NaN	0.0015254	1	19739	60	52.443	1	42286			7020	1530	5968	6124	7020	7020		
GEALSALDSK	10	Unmodified	_GEALSALDSK_			0	0	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.758746	989.50294	0.35558	0.00017628	0.7346	0.00036418	1.0902	0.00054046	495.758586050115	5.8155	0.25715	5.8155	5.6825	5.9396	0	711	52	0.847456455381371	0.0346351908401327	0.847456455381371	344.165843276058	0	14.0659140500111						479	30	4	NaN	NaN	NaN	0.0060379	1	4038	67.881	31.67	1	200820			7021	331	5969	6125	7021	7021		
GEATVSFDDPPSAK	14	Unmodified	_GEATVSFDDPPSAK_			0	0	0	Q92804;P35637	Q92804;P35637	Q92804	TAF15;FUS	TATA-binding protein-associated factor 2N;RNA-binding protein FUS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.833171	1419.65179	2.0905	0.001486	0.78149	0.00055551	2.872	0.0020415	710.834070062269	7.0303	0.36362	7.0303	6.9328	7.2964	0	525	91	0.973257487423603	0.0605685788443037	0.973257487423603	393.609270474713	0	24.4954232982132						2014	42	5	NaN	NaN	NaN	8.9439E-12	1	16078	147.72	139.72	1	1649900			7022	2434;977	5970	6126	7022	7022		
GEAVLRPGLDAEPELSPEEQR	21	Unmodified	_GEAVLRPGLDAEPELSPEEQR_			0	0	1	Q9BRJ6	Q9BRJ6	Q9BRJ6	C7orf50	Uncharacterized protein C7orf50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.720394	2291.13935	1.2881	0.00098504	1.3841	0.0010584	2.6722	0.0020435	765.055961132205	10.055	0.11527	10.055	10.019	10.135	0	594	43	0.926715457081489	0.0283750805572571	0.926715457081489	560.110232084365	0	17.1500030941431						377	14	4	NaN	NaN	NaN	1.9614E-07	1	35577	66.913	54.742	1	90173			7023	2708	5971	6127	7023	7023		
GEDEEENNLEVR	12	Unmodified	_GEDEEENNLEVR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.812967	1431.61138	2.6842	0.0019241	-0.96945	-0.00069491	1.7148	0.0012292	716.812828108645	4.8312	0.31919	4.8312	4.7337	5.0529	0	522	52	0.975277694896658	0.0343387884231721	0.975277694896658	394.394506001253	0	13.8863316240136						841	37	5	NaN	NaN	NaN	1.1282E-23	1	16429	228.54	172.79	1	395430			7024	518	5972	6128	7024	7024		
GEDFPANNIVK	11	Unmodified	_GEDFPANNIVK_			0	0	0	P43307	P43307	P43307	SSR1	Translocon-associated protein subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.303852	1202.59315	1.1283	0.00067959	-1.1516	-0.00069359	-0.023245	-1.4E-05	602.303849030227	8.2188	0.31933	8.2188	8.1302	8.4495	0	579	79	0.936845902828289	0.0527477576389463	0.936845902828289	379.542595338782	0	21.3695985349857						1144	37	3	NaN	NaN	NaN	0.0023626	1	9540	79.059	63.477	1	397610			7025	1065	5973	6129	7025	7025		
GEDLFEDGGIIR	12	Unmodified	_GEDLFEDGGIIR_			0	0	0	Q13451	Q13451	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.825149	1319.63574	1.2933	0.00085465	-7.7627	-0.0051298	-6.4694	-0.0042751	661.321839814546	8.8842	0.24845	8.8842	8.7778	9.0262	0	519	61	0.97729762293174	0.0403734448805974	0.97729762293174	395.532118919719	0	16.3399499057479						453	29	3	NaN	NaN	NaN	0.048516	1	12954	23.053	9.0583	1	186330			7026	1670	5974	6130	7026	7026		
GEDLFEDGGIIR	12	Unmodified	_GEDLFEDGGIIR_			0	0	0	Q13451	Q13451	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.825149	1319.63574	0.56367	0.00037249	1.1189	0.00073942	1.6826	0.0011119	660.825092245719	13.043	0.19508	13.043	12.928	13.123	0	549	43	0.957085760909907	0.028308359885891	0.957085760909907	387.351933766008	0	11.4569648733665						404	23	5	NaN	NaN	NaN	0.0025677	1	12957	57.888	46.532	1	105460			7027	1670	5974	6130	7027	7027		
GEDLTEEEDGGIIR	14	Unmodified	_GEDLTEEEDGGIIR_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.857374	1531.7002	2.5206	0.0019329	1.4202	0.0010891	3.9407	0.003022	766.85869346481	8.7955	0.35495	8.7955	8.7156	9.0706	0	420	52	1.04379886199097	0.0341872929561484	1.04379886199097	421.83985567952	0	13.8164192852127						1183	41	6	NaN	NaN	NaN	2.6013E-25	1	19479	244.74	216.09	1	1174300			7028	1530	5975	6131	7028	7028		
GEDNIDFMPTILSR	14	Unmodified	_GEDNIDFMPTILSR_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.39033	1606.76611	1.1261	0.00090582	0.018465	1.4853E-05	1.1446	0.00092067	804.390155708757	16.253	0.15962	16.253	16.209	16.369	0	435	52	1.03374239103424	0.0341825748875688	1.03374239103424	417.600780557125	0	13.8087303745179						546	19	4	NaN	NaN	NaN	1.1631E-07	1	21811	117.21	109.65	1	187090			7029	951	5976	6132	7029	7029		
GEDSVPDTVHHVVVPVNPK	19	Unmodified	_GEDSVPDTVHHVVVPVNPK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.02363	2024.0327	2.24	0.0022692	-0.92657	-0.00093864	1.3134	0.0013305	1013.02250496704	7.8729	0.097528	7.8729	7.8197	7.9172	0	186	28	1.1997861197946	0.0179034061988514	1.1997861197946	483.822495174682	0	7.21967900473544						180	12	3	NaN	NaN	NaN	0.0029454	1	32046	46.358	45.087	1	30910			7030	2404	5977	6133	7030	7030		
GEDSVPDTVHHVVVPVNPK	19	Unmodified	_GEDSVPDTVHHVVVPVNPK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.684844	2024.0327	2.3476	0.0015862	0.40671	0.00027481	2.7543	0.001861	676.019402220415	7.8729	0.20396	7.8729	7.7576	7.9615	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	626.511038303283	0	10.9524188659016						331	24	2	NaN	NaN	NaN	0.0016764	1	32048	41.317	40.75	1	267080			7031	2404	5977	6133	7031	7031		
GEDVPLTEQTVSQVLQSAK	19	Unmodified	_GEDVPLTEQTVSQVLQSAK_			0	0	0	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.02603	2028.03751	1.1077	0.0011243	-0.51636	-0.00052412	0.59131	0.00060019	1015.5269680997	15.606	0.20387	15.606	15.553	15.757	-1.7764E-15	72	142	1.27517645957152	0.0932013058564083	1.27517645957152	514.217280029595	0	37.5836000052827						1277	24	5	NaN	NaN	NaN	0.00012274	1	32120	69.369	63.466	1	378680			7032	1353	5978	6134	7032	7032		
GEEILTPLNVQQAVDSR	17	Unmodified	_GEEILTPLNVQQAVDSR_			0	0	0	Q9HD67	Q9HD67	Q9HD67	MYO10	Unconventional myosin-X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.989254	1867.96396	1.4353	0.0013419	-1.6249	-0.0015192	-0.1896	-0.00017728	935.489371588184	14.125	0.11526	14.125	14.063	14.178	0	261	31	1.14997238118939	0.0199597456368612	1.14997238118939	463.998589212813	0	8.05349238646187						180	14	3	NaN	NaN	NaN	0.04606	1	28883	26.517	22.271	1	34681			7033	2972	5979	6135	7033	7033		
GEEIYSMDEGIR	12	Unmodified	_GEEIYSMDEGIR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.813924	1397.61329	0.80585	0.00056394	0.58829	0.00041169	1.3941	0.00097564	699.814407086855	9.3455	0.17738	9.3455	9.2834	9.4608	0	504	40	0.987393073566096	0.0262409175570258	0.987393073566096	399.386797364257	0	10.6140870374441						505	21	5	NaN	NaN	NaN	5.0906E-05	1	15362	78.932	75.829	1	157570			7034	2594	5980	6136	7034	7034		
GEELGGGQDPVQLLSGFPR	19	Unmodified	_GEELGGGQDPVQLLSGFPR_			0	0	0	Q04323	Q04323	Q04323	UBXN1	UBX domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.494704	1954.97485	0.99161	0.00097029	-2.0218	-0.0019784	-1.0302	-0.0010081	978.993514230681	16.67	0.2128	16.67	16.59	16.803	0	213	31	1.18187287897418	0.0199077014377831	1.18187287897418	476.713523567006	0	8.02985724383717						456	25	3	NaN	NaN	NaN	1.4667E-05	1	30796	61.503	54.648	1	126970			7035	1542	5981	6137	7035	7035		
GEELSCEER	9	Unmodified	_GEELSCEER_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.732403	1107.45025	1.5442	0.00085663	0.76537	0.00042457	2.3096	0.0012812	554.732730210506	2.7562	0.37249	2.7562	2.703	3.0755	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	350.270094223739	0	9.08059873687188						594	43	4	NaN	NaN	NaN	0.0012821	1	6908	72.038	66.29	1	168870			7036	933	5982	6138	7036	7036		
GEETPVIVGSALCALEGR	18	Unmodified	_GEETPVIVGSALCALEGR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.472383	1856.93021	1.5915	0.0014792	-0.51755	-0.00048105	1.0739	0.00099817	929.472040922172	17.468	0.23942	17.468	17.353	17.592	0	288	85	1.13199748998575	0.0560182025082361	1.13199748998575	456.765961645958	0	22.603590877816						1200	28	5	NaN	NaN	NaN	1.7951E-15	1	28629	114.5	96.403	1	371120			7037	1131	5983	6139	7037	7037		
GEETPVIVGSALCALEGR	18	Unmodified	_GEETPVIVGSALCALEGR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.984014	1856.93021	0.17382	0.00010776	1.6657	0.0010327	1.8395	0.0011405	620.319765831043	17.486	0.14188	17.486	17.406	17.548	0	558	28	0.951016745717027	0.0182120890547127	0.951016745717027	575.606830802477	0	11.0229424563622						237	17	3	NaN	NaN	NaN	0.0019411	1	28630	49.487	47.645	1	54839			7038	1131	5983	6139	7038	7038		
GEETPVIVGSALCALEGRDPELGLK	25	Unmodified	_GEETPVIVGSALCALEGRDPELGLK_			0	0	1	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	870.786299	2609.33707	0.62167	0.00054134	-0.51788	-0.00045097	0.10379	9.0379E-05	871.120107480034	18.142	0.14184	18.142	18.062	18.204	0	489	82	0.997481546940468	0.0544326408515292	0.997481546940468	602.438428946214	0	32.8751090569758						882	17	5	NaN	NaN	NaN	0.00016091	1	37272	42.072	40.821	1	213050			7039	1131	5984	6140	7039	7039		
GEFDPGQDTYQHPPK	15	Unmodified	_GEFDPGQDTYQHPPK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.386633	1714.75871	3.0918	0.0026539	-1.4988	-0.0012865	1.593	0.0013674	858.886952360364	5.6381	0.2838	5.6381	5.5228	5.8066	0	384	49	1.06790610341098	0.0321252637556668	1.06790610341098	431.169610935842	0	12.9706510998481						425	33	3	NaN	NaN	NaN	0.00019122	1	24892	72.327	71.364	1	83041			7040	2674	5985	6141	7040	7040		
GEFGDVMLGDYR	12	Unmodified	_GEFGDVMLGDYR_			0	0	0	P41240	P41240	P41240	CSK	Tyrosine-protein kinase CSK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.805902	1357.59725	1.5545	0.0010568	1.0599	0.00072055	2.6145	0.0017773	679.807010323106	12.955	0.070928	12.955	12.91	12.981	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.417456749379	0	7.35440210982426						153	9	3	NaN	NaN	NaN	0.0033718	1	14119	29.317	25.424	1	38588			7041	1034	5986	6142	7041	7041		
GEFGGFGSVSGK	12	Unmodified	_GEFGGFGSVSGK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.769645	1127.52474	0.96909	0.00054731	-0.5396	-0.00030475	0.42949	0.00024256	564.76924847858	8.3076	0.26611	8.3076	8.2366	8.5027	0	657	43	0.884090832094921	0.0284538779010195	0.884090832094921	358.440419752969	0	11.5361675160388						621	31	4	NaN	NaN	NaN	0.0030801	1	7451	56.202	48.556	1	267570			7042	1582	5987	6143	7042	7042		
GEFGGFGSVTGK	12	Unmodified	_GEFGGFGSVTGK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.77747	1141.54039	0.87181	0.00049848	0.36695	0.00020981	1.2388	0.00070829	571.777889918209	9.1504	0.21281	9.1504	9.0883	9.3011	0	654	52	0.886123392477847	0.0345439513125253	0.886123392477847	359.21120065752	0	14.0032125680931						627	25	5	NaN	NaN	NaN	4.9253E-05	1	7827	126.29	106.81	1	436160			7043	1890	5988	6144	7043	7043		
GEFLHLCR	8	Unmodified	_GEFLHLCR_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.258194	1030.50183	0.42883	0.00022138	3.5189	0.0018166	3.9477	0.002038	516.259650691369	7.0126	0.12421	7.0126	6.9594	7.0836	0	663	22	0.880024865079826	0.0142298979470937	0.880024865079826	357.197373019093	0	5.77583925946294						137	15	2	NaN	NaN	NaN	0.015912	1	5003	40.203	30.124	1	49446			7044	2328	5989	6145	7044	7044		
GEFTYYEIQDNTGK	14	Unmodified	_GEFTYYEIQDNTGK_			0	0	0	Q16666	Q16666	Q16666	IFI16	Gamma-interferon-inducible protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.875567	1663.73658	2.8586	0.0023808	0.87332	0.00072737	3.7319	0.0031082	832.876265917037	9.8686	0.15959	9.8686	9.7889	9.9484	0	390	64	1.06389100039157	0.0421382628414091	1.06389100039157	429.654104308209	0	17.0176057242386						393	19	3	NaN	NaN	NaN	9.4673E-17	1	23437	134.2	109.38	1	90061			7045	1899	5990	6146	7045	7045		
GEGAGPPPPLPPAQPGAEGGGDR	23	Unmodified	_GEGAGPPPPLPPAQPGAEGGGDR_			0	0	0	Q5T9A4;Q9NVI7	Q5T9A4;Q9NVI7	Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.00597	2079.99738	2.1882	0.0022779	-0.64269	-0.00066904	1.5455	0.0016089	1041.506340062	7.4028	0.29259	7.4028	7.2432	7.5358	0	240	43	1.16393748060522	0.027916769999432	1.16393748060522	469.280228325699	0	11.2555772262248						260	34	2	NaN	NaN	NaN	0.00061941	1	33024	45.826	43.978	1	31533			7046	3068;1996	5991	6147	7046	7046		
GEGDIHENVDTDLPGSLGQSEEK	23	Unmodified	_GEGDIHENVDTDLPGSLGQSEEK_			0	0	0	Q9UK76	Q9UK76	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.369978	2425.08811	1.8317	0.0014826	-0.38762	-0.00031373	1.4441	0.0011688	809.704179451192	9.2303	0.23946	9.2303	9.1592	9.3987	0	555	82	0.953040030838688	0.0546741514328335	0.953040030838688	575.829207541483	0	33.0342611787944						1462	28	6	NaN	NaN	NaN	9.5721E-25	1	36467	160.81	130.63	1	562560			7047	3257	5992	6148	7047	7047		
GEGGILINSQGER	13	Unmodified	_GEGGILINSQGER_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.341498	1328.66844	1.6376	0.0010896	-0.49858	-0.00033173	1.1391	0.00075786	665.340887524943	6.4629	0.25714	6.4629	6.3653	6.6225	0	567	64	0.944945209309785	0.0424890099492728	0.944945209309785	382.411471782617	0	17.1949491560002						537	30	3	NaN	NaN	NaN	0.0025254	1	13247	86.243	75.541	1	314930			7048	919	5993	6149	7048	7048		
GEGPDVDVNLPK	12	Unmodified	_GEGPDVDVNLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.314417	1238.61428	1.8543	0.0011502	0.87374	0.00054199	2.728	0.0016922	620.315089550952	8.8842	0.38157	8.8842	8.7422	9.1238	0	540	103	0.963152256458504	0.0688156045560857	0.963152256458504	390.071269481858	0	27.8699344255862						1663	44	5	NaN	NaN	NaN	0.0012708	1	10575	76.85	57.594	1	1059600			7049	1584	5994	6150	7049	7049		
GEGPDVHMTLPK	12	Unmodified	_GEGPDVHMTLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.818812	1279.62307	1.8051	0.0011567	0.19408	0.00012437	1.9991	0.0012811	640.818409412245	7.394	0.20394	7.394	7.2787	7.4826	0	540	46	0.963152256458504	0.0303324855868733	0.963152256458504	389.933447094804	0	12.2801463470927						386	24	3	NaN	NaN	NaN	0.0038924	1	11744	54.27	31.217	1	119440			7050	1584	5995	6151	7050	7050		
GEGPEVDMNLPK	12	Unmodified	_GEGPEVDMNLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.308277	1284.602	1.4408	0.0009269	-1.0936	-0.00070351	0.34725	0.00022339	643.308098930091	9.106	0.2394	9.106	9.0617	9.3011	0	546	82	0.959108205975751	0.0546438748067893	0.959108205975751	388.280142446931	0	22.1217286658987						529	28	4	NaN	NaN	NaN	0.035373	1	11890	47.334	39.688	1	184150			7051	1584	5996	6152	7051	7051		
GEGPEVDVNLPK	12	Unmodified	_GEGPEVDVNLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.322242	1252.62993	1.7016	0.0010675	-1.2215	-0.00076627	0.48012	0.00030119	627.322301088011	9.0528	0.34606	9.0528	8.8842	9.2303	0	564	79	0.946969335010767	0.0526382434523011	0.946969335010767	383.469981411245	0	21.3155648149313						1124	40	4	NaN	NaN	NaN	7.4939E-05	1	10988	110.88	98.289	1	1077300			7052	1584	5997	6153	7052	7052		
GEGPEVDVTLPK	12	Unmodified	_GEGPEVDVTLPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.824618	1239.63468	1.3419	0.00083307	-0.44612	-0.00027696	0.89576	0.00055611	620.82433862529	9.6381	0.23939	9.6381	9.5228	9.7622	0	588	49	0.93076847747433	0.032415189981154	0.93076847747433	376.952605581354	0	13.1278514684631						633	28	3	NaN	NaN	NaN	0.00042983	1	10610	79.311	62.659	1	175180			7053	1584	5998	6154	7053	7053		
GEGQLGPAER	10	Unmodified	_GEGQLGPAER_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.254163	1012.49377	1.0561	0.00053573	0.55182	0.00027991	1.608	0.00081564	507.254555932908	3.0311	0.30148	3.0311	2.9424	3.2439	0	747	49	0.822982596624503	0.0326545061088502	0.822982596624503	334.122538048737	0	13.2573963344636						1062	35	4	NaN	NaN	NaN	8.5059E-05	1	4562	121.8	94.06	1	970420			7054	679	5999	6155	7054	7054		
GEHPGLSIGDVAK	13	Unmodified	_GEHPGLSIGDVAK_			0	0	0	P09429;B2RPK0	P09429	P09429	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	427.226215	1278.65681	-1.0542	-0.00045037	-1.1747	-0.00050186	-2.2289	-0.00095222	427.225911012258	6.6491	0.14187	6.6491	6.6047	6.7466	0	858	25	0.747263789720611	0.0164138593220675	0.747263789720611	453.795931001024	0	9.96775526238508						215	17	3	NaN	NaN	NaN	0.053746	1	11725	19.324	18.761	1	54631			7055	601	6000	6156	7055	7055		
GEHPGLSIGDVAK	13	Unmodified	_GEHPGLSIGDVAK_			0	0	0	P09429;B2RPK0	P09429	P09429	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.335684	1278.65681	2.1827	0.0013977	3.0253	0.0019372	5.208	0.0033349	640.338024936281	6.6491	0.37241	6.6491	6.587	6.9594	0	513	88	0.981336640919867	0.0585941809781667	0.981336640919867	397.298612697167	0	23.7221212823881						1521	43	5	NaN	NaN	NaN	0.042235	1	11727	43.306	19.184	1	2382000			7056	601	6000	6156	7056	7056		
GEHSIVYLK	9	Unmodified	_GEHSIVYLK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	349.194075	1044.5604	-0.66084	-0.00023076	-1.0628	-0.00037111	-1.7236	-0.00060187	349.193394058405	5.0972	0.097525	5.0972	5.0617	5.1593	0	894	19	0.722622390967862	0.0123310143860629	0.722622390967862	439.879281159723	0	7.50621321994538						87	12	2	NaN	NaN	NaN	0.041458	1	5344	30.562	27.103	1	17274			7057	1530	6001	6157	7057	7057		
GEHSIVYLK	9	Unmodified	_GEHSIVYLK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.287474	1044.5604	2.0095	0.0010515	0.38156	0.00019967	2.391	0.0012512	523.287722743364	5.0972	0.42563	5.0972	4.8933	5.3189	0	627	79	0.90440375274676	0.0528282854004281	0.90440375274676	367.027515517263	0	21.438914069815						768	49	4	NaN	NaN	NaN	4.149E-06	1	5349	110.22	79.656	1	374600			7058	1530	6001	6157	7058	7058		
GEHVPGFCLPK	11	Unmodified	_GEHVPGFCLPK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.209619	1239.60703	-1.2844	-0.000532	-1.7808	-0.00073761	-3.0651	-0.0012696	414.209118458993	8.6002	0.14205	8.6002	8.547	8.6891	0	885	25	0.728786607772777	0.0164344731641031	0.728786607772777	442.723887082472	0	9.98362725626913						234	17	3	NaN	NaN	NaN	0.0049756	1	10604	40.502	36.609	1	71103			7059	2420	6002	6158	7059	7059		
GEHVPGFCLPK	11	Unmodified	_GEHVPGFCLPK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.209619	1239.60703	-1.8648	-0.0007724	0.17	7.0415E-05	-1.6948	-0.00070198	414.209543742008	8.5825	0.11529	8.5825	8.547	8.6623	0	810	28	0.78005493425781	0.0184231892400387	0.78005493425781	473.868401975093	0	11.1917338908551						162	14	3	NaN	NaN	NaN	0.039933	1	10605	18.336	14.443	1	30491			7060	2420	6002	6158	7060	7060		
GEIAGPPDTPYEGGR	15	Unmodified	_GEIAGPPDTPYEGGR_			0	0	0	P61086	P61086	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.357345	1514.70014	1.7356	0.0013162	0.94959	0.00072013	2.6852	0.0020363	758.357854651772	7.0037	0.23056	7.0037	6.8974	7.128	0	489	55	0.997481546940468	0.0363109867512514	0.997481546940468	403.161744731219	0	14.6761619966293						845	27	4	NaN	NaN	NaN	0.00012694	1	18955	62.705	48.927	1	236360			7061	1327	6003	6159	7061	7061		
GEIDAHEDSFK	11	Unmodified	_GEIDAHEDSFK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.280574	1246.5466	2.5261	0.001577	1.5569	0.00097195	4.083	0.002549	624.280910234884	4.2992	0.15961	4.2992	4.2549	4.4145	0	570	37	0.942920803299286	0.0242911943445451	0.942920803299286	381.850854291773	0	9.83710750656542						319	19	3	NaN	NaN	NaN	0.00016792	1	10804	90.263	75.5	1	145870			7062	1703	6004	6160	7062	7062		
GEIEVVTSSLPELYVEK	17	Unmodified	_GEIEVVTSSLPELYVEK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.498589	1890.98263	1.7508	0.0016571	-1.5651	-0.0014814	0.18567	0.00017573	946.496895437765	16.147	0.16848	16.147	16.058	16.227	0	258	52	1.15196821829984	0.0339105891851352	1.15196821829984	464.762170726844	0	13.6812446645187						616	20	4	NaN	NaN	NaN	0.00018225	1	29398	72.327	60.156	1	134200			7063	1826	6005	6161	7063	7063		
GEIGDATPFNDAVNVQK	17	Unmodified	_GEIGDATPFNDAVNVQK_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.933948	1773.85334	2.621	0.0023272	0.55773	0.00049523	3.1787	0.0028225	887.934781983359	10.649	0.17732	10.649	10.605	10.782	0	360	55	1.08395544855938	0.0360712461548371	1.08395544855938	437.53263762601	0	14.55995953852						343	21	3	NaN	NaN	NaN	0.034105	1	26507	54.309	41.626	1	71332			7064	918	6006	6162	7064	7064		
GEILWSHLELLR	12	Unmodified	_GEILWSHLELLR_			0	0	0	Q06546	Q06546	Q06546	GABPA	GA-binding protein alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.276909	1464.8089	-2.0196	-0.00098814	-1.0996	-0.00053799	-3.1192	-0.0015261	489.276527033687	15.349	0.06209	15.349	15.322	15.384	0	810	19	0.78005493425781	0.0122829806826988	0.78005493425781	473.066297568112	0	7.44904485501849						98	8	3	NaN	NaN	NaN	0.0035932	1	17426	31.425	18.829	1	20378			7065	1561	6007	6163	7065	7065		
GEIQEYGAPSDLLQQR	16	Unmodified	_GEIQEYGAPSDLLQQR_			0	0	0	P33527	P33527	P33527	ABCC1	Multidrug resistance-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.447222	1802.87989	1.6771	0.0015135	0.7845	0.00070797	2.4616	0.0022215	902.448250196373	11.545	0.088733	11.545	11.5	11.589	0	279	34	1.13799159301878	0.0219723346163216	1.13799159301878	459.286664869896	0	8.8679040752537						209	11	3	NaN	NaN	NaN	3.3504E-06	1	27284	89.359	71.471	1	52875			7066	947	6008	6164	7066	7066		
GEISATQDVMMEEIFR	16	Unmodified	_GEISATQDVMMEEIFR_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.431869	1854.84918	0.63157	0.00058637	2.5847	0.0023997	3.2163	0.0029861	929.438441574802	16.98	0.17733	16.98	16.936	17.114	0	291	70	1.12999890578964	0.0459358574095619	1.12999890578964	455.963306744299	0	18.5354740923065						479	21	4	NaN	NaN	NaN	8.6803E-19	1	28591	151.08	136.68	1	83729			7067	1706	6009	6165	7067	7067		
GELGCFLSHYNIWK	14	Unmodified	_GELGCFLSHYNIWK_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.280214	1722.81881	-1.8164	-0.0010449	-0.49675	-0.00028577	-2.3131	-0.0013307	575.280119585535	15.775	0.12415	15.775	15.73	15.854	0	807	28	0.782101955086014	0.0184231892400387	0.782101955086014	473.643284880506	0	11.1571385455333						350	15	5	NaN	NaN	NaN	0.002594	1	25124	35.845	33.544	1	133010			7068	2289	6010	6166	7068	7068		
GELGCFLSHYNIWK	14	Unmodified	_GELGCFLSHYNIWK_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.416682	1722.81881	2.135	0.0018413	0.88756	0.00076545	3.0226	0.0026067	862.417424980667	15.775	0.12415	15.775	15.73	15.854	0	264	31	1.14797626962532	0.0199652358426974	1.14797626962532	463.480733027347	0	8.06070856016692						332	15	4	NaN	NaN	NaN	7.7391E-06	1	25125	71.896	67.068	1	109170			7069	2289	6010	6166	7069	7069		
GELLLQLCR	9	Unmodified	_GELLLQLCR_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.307884	1100.60121	0.1991	0.00010977	0.26164	0.00014424	0.46074	0.00025401	551.308347160632	12.414	0.17733	12.414	12.378	12.556	0	612	34	0.914549654013882	0.0223086119453004	0.914549654013882	370.898994275703	0	9.04734007375532						257	21	3	NaN	NaN	NaN	0.0027421	1	6743	65.313	47.917	1	53495			7070	2785	6011	6167	7070	7070		
GELPDFQDGTK	11	Unmodified	_GELPDFQDGTK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.785492	1205.55643	0.96107	0.00058028	2.1782	0.0013152	3.1393	0.0018954	603.787114845921	8.1213	0.16858	8.1213	8.068	8.2366	0	591	55	0.928742107665821	0.0364873075787652	0.928742107665821	376.249013996286	0	14.781620631364						357	20	3	NaN	NaN	NaN	0.0022819	1	9613	33.723	25.541	1	76735			7071	57	6012	6168	7071	7071		
GELQNWPDLLPK	12	Unmodified	_GELQNWPDLLPK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.374809	1408.73507	1.0423	0.00073523	-0.48546	-0.00034243	0.55686	0.00039279	705.374570950766	15.686	0.41678	15.686	15.473	15.89	0	486	55	0.999498404980629	0.0363009499025385	0.999498404980629	404.251969087705	0	14.682094943553						1249	48	4	NaN	NaN	NaN	0.0066565	1	15723	47.361	28.854	1	499610			7072	2448	6013	6169	7072	7072		
GELQSSDLFHHSK	13	Unmodified	_GELQSSDLFHHSK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.575795	1483.70556	-0.94972	-0.00047066	-0.041052	-2.0344E-05	-0.99078	-0.000491	495.575818238131	5.3189	0.15963	5.3189	5.2745	5.4342	0	822	31	0.771863999559055	0.0204801911124388	0.771863999559055	468.04316547222	0	12.4187855415175						322	19	4	NaN	NaN	NaN	0.0027077	1	18018	43.306	40.635	1	115600			7073	1531	6014	6170	7073	7073		
GELQSSDLFHHSK	13	Unmodified	_GELQSSDLFHHSK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.860054	1483.70556	1.6499	0.0012256	-0.25081	-0.00018631	1.3991	0.0010393	742.859817264324	5.31	0.097506	5.31	5.2835	5.381	0	435	31	1.03374239103424	0.0201226639147589	1.03374239103424	417.896672153931	0	8.13470972824911						178	12	2	NaN	NaN	NaN	0.0054664	1	18019	66.953	47.63	1	56562			7074	1531	6014	6170	7074	7074		
GELTTLIHQLQEK	13	Unmodified	_GELTTLIHQLQEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.947229	1508.81986	-2.1324	-0.0010746	-1.3445	-0.00067756	-3.477	-0.0017522	503.94666529032	13.664	0.062055	13.664	13.637	13.7	0	768	22	0.808687310729125	0.0143032423211241	0.808687310729125	490.296773157425	0	8.67187287681446						98	8	3	NaN	NaN	NaN	0.0019617	1	18770	51.531	42.554	1	18550			7075	2167	6015	6171	7075	7075		
GELTTLIHQLQEK	13	Unmodified	_GELTTLIHQLQEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.417205	1508.81986	1.7842	0.0013478	1.4545	0.0010988	3.2388	0.0024466	755.418137897712	13.664	0.16847	13.664	13.611	13.779	0	354	37	1.08796502040166	0.0240574350512286	1.08796502040166	439.748839916078	0	9.72386883470614						391	20	4	NaN	NaN	NaN	2.2955E-07	1	18771	136.06	116.74	1	189310			7076	2167	6015	6171	7076	7076		
GEMDSFSLISDSAYVAQNAAR	21	Unmodified	_GEMDSFSLISDSAYVAQNAAR_			0	0	0	Q8N3C0	Q8N3C0	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1116.51551	2231.01646	0.32743	0.00036558	0.90557	0.0010111	1.233	0.0013767	1117.01798570722	16.706	0.079827	16.706	16.652	16.732	0	135	25	1.23356193185193	0.0158759772941632	1.23356193185193	497.128314242771	0	6.39805560257128						128	10	3	NaN	NaN	NaN	0.0010134	1	34996	48.363	46.775	1	22414			7077	2245	6016	6172	7077	7077		
GEMMDLQHGSLFLQTPK	17	Unmodified	_GEMMDLQHGSLFLQTPK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.471328	1930.9281	2.4746	0.0023916	-0.48349	-0.00046728	1.9911	0.0019243	966.972768256546	13.451	0.33696	13.451	13.371	13.708	0	171	127	1.20972836110953	0.0836239932486222	1.20972836110953	487.991979089224	0	33.7330588226527						2149	39	7	NaN	NaN	NaN	1.9472E-34	1	30323	256.4	241.25	1	2585300			7078	553	6017	6173	7078	7078		
GEMMDLQHGSLFLQTPK	17	Unmodified	_GEMMDLQHGSLFLQTPK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.649978	1930.9281	1.4752	0.00095098	0.81006	0.00052221	2.2852	0.0014732	644.985326646034	13.451	0.3015	13.451	13.38	13.682	0	570	79	0.942920803299286	0.0526674138636499	0.942920803299286	570.544703638595	0	31.868120768049						1795	35	7	NaN	NaN	NaN	3.769E-10	1	30325	149.02	132.89	1	2056100			7079	553	6017	6173	7079	7079		
GEMMDLQHGSLFLQTPK	17	Oxidation (M)	_GEMM(Oxidation (M))DLQHGSLFLQTPK_	GEM(0.005)M(0.995)DLQHGSLFLQTPK	GEM(-23)M(23)DLQHGSLFLQTPK	0	1	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.981616	1946.92302	1.0566	0.00068674	-0.26466	-0.00017203	0.79189	0.00051471	650.315565127338	11.545	0.2838	11.545	11.447	11.731	0	552	49	0.955063035883597	0.0323792954262402	0.955063035883597	577.857915676728	0	19.5909918645083						623	33	4	NaN	NaN	NaN	9.3196E-07	1	30657	115.35	110.25	2	392890			7080	553	6017	6174	7080	7080	129;130	
GEMMDLQHGSLFLQTPK	17	Oxidation (M)	_GEM(Oxidation (M))MDLQHGSLFLQTPK_	GEM(0.79)M(0.21)DLQHGSLFLQTPK	GEM(5.8)M(-5.8)DLQHGSLFLQTPK	0	1	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.468786	1946.92302	1.909	0.0018603	-0.31438	-0.00030636	1.5946	0.0015539	974.468617588926	11.82	0.21284	11.82	11.749	11.961	0	168	106	1.21171599086077	0.0696531326830698	1.21171599086077	488.765113552983	0	28.0957101845108						1239	25	5	NaN	NaN	NaN	4.6347E-06	1	30658	95.677	86.415	2	422000			7081	553	6017	6174	7081	7081	129;130	
GEMMDLQHGSLFLQTPK	17	Oxidation (M)	_GEMM(Oxidation (M))DLQHGSLFLQTPK_	GEM(0.018)M(0.982)DLQHGSLFLQTPK	GEM(-17)M(17)DLQHGSLFLQTPK	0	1	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.981616	1946.92302	0.74537	0.00048448	1.0749	0.00069866	1.8203	0.0011831	649.98218681967	11.669	0.17742	11.669	11.562	11.74	0	564	37	0.946969335010767	0.0242911943445451	0.946969335010767	572.960841733384	0	14.6973113529613						187	21	2	NaN	NaN	NaN	3.3589E-05	1	30659	89.359	84.805	2	209340			7082	553	6017	6174	7082	7082	129;130	
GEMMDLQHGSLFLQTPK	17	2 Oxidation (M)	_GEM(Oxidation (M))M(Oxidation (M))DLQHGSLFLQTPK_	GEM(1)M(1)DLQHGSLFLQTPK	GEM(83)M(83)DLQHGSLFLQTPK	0	2	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.313254	1962.91793	1.929	0.0012641	1.0599	0.00069456	2.9889	0.0019587	655.315150963111	9.7977	0.20393	9.7977	9.7179	9.9218	0	552	58	0.955063035883597	0.0384158376205809	0.955063035883597	577.824616442815	0	23.2420435138138						480	24	3	NaN	NaN	NaN	0.00012658	1	30976	83.474	77.776	1	252880			7083	553	6017	6175	7083	7083	129;130	
GEMMDLQHGSLFLR	14	Unmodified	_GEMMDLQHGSLFLR_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.265687	1632.77523	-0.7915	-0.00043158	0.32006	0.00017452	-0.47143	-0.00025706	545.266340803465	13.176	0.38138	13.176	13.114	13.496	0	771	154	0.806643990516186	0.104021437391833	0.806643990516186	488.720715765807	0	63.0233807414755						2994	44	7	NaN	NaN	NaN	3.8613E-06	1	22563	154.66	138.38	1	5424100			7084	471	6018	6176	7084	7084		
GEMMDLQHGSLFLR	14	Unmodified	_GEMMDLQHGSLFLR_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.394893	1632.77523	2.6113	0.0021344	1.7267	0.0014114	4.338	0.0035458	817.396937138474	13.176	0.37248	13.176	13.088	13.46	0	339	76	1.09798411722691	0.0500955197846764	1.09798411722691	443.492103921045	0	20.2343249940955						2206	43	6	NaN	NaN	NaN	3.4922E-08	1	22565	145.08	128.09	1	4099800			7085	471	6018	6176	7085	7085		
GEMMDLQHGSLFLR	14	Oxidation (M)	_GEMM(Oxidation (M))DLQHGSLFLR_	GEM(0.001)M(0.999)DLQHGSLFLR	GEM(-29)M(29)DLQHGSLFLR	0	1	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.597325	1648.77015	-0.25754	-0.0001418	-1.0848	-0.00059729	-1.3424	-0.00073909	550.597083601782	11.066	0.12416	11.066	11.012	11.137	0	762	82	0.812773098473386	0.0551006798103593	0.812773098473386	492.394014678051	0	33.3810813796281						1214	15	6	NaN	NaN	NaN	6.7988E-05	1	22989	106	94.648	2	787410			7086	471	6018	6177	7086	7086	67;68	
GEMMDLQHGSLFLR	14	Oxidation (M)	_GEM(Oxidation (M))MDLQHGSLFLR_	GEM(0.999)M(0.001)DLQHGSLFLR	GEM(32)M(-32)DLQHGSLFLR	0	1	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.597325	1648.77015	0.44849	0.00024693	-0.50476	-0.00027792	-0.05627	-3.0982E-05	550.597528720882	11.35	0.24837	11.35	11.279	11.527	0	693	85	0.85967808974117	0.0570185034225358	0.85967808974117	520.809983359597	0	34.5429366794968						1583	29	6	NaN	NaN	NaN	1.1495E-05	1	22990	138.23	127.98	2	1287000			7087	471	6018	6177	7087	7087	67;68	
GEMMDLQHGSLFLR	14	Oxidation (M)	_GEM(Oxidation (M))MDLQHGSLFLR_	GEM(0.905)M(0.095)DLQHGSLFLR	GEM(9.8)M(-9.8)DLQHGSLFLR	0	1	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.39235	1648.77015	2.9783	0.0024583	-1.2926	-0.0010669	1.6858	0.0013914	825.391454670378	11.35	0.30154	11.35	11.216	11.518	0	345	58	1.09397730668811	0.0380778290507997	1.09397730668811	441.837638421504	0	15.3789461272798						1026	35	5	NaN	NaN	NaN	0.011341	1	22991	58.476	55.997	2	317440			7088	471	6018	6177	7088	7088	67;68	
GEMMDLQHGSLFLR	14	Oxidation (M)	_GEMM(Oxidation (M))DLQHGSLFLR_	GEM(0.222)M(0.778)DLQHGSLFLR	GEM(-5.4)M(5.4)DLQHGSLFLR	0	1	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.39235	1648.77015	2.8969	0.0023911	0.18201	0.00015023	3.079	0.0025413	825.392125731464	11.066	0.13302	11.066	11.012	11.146	0	327	43	1.10599442759226	0.0280283709863309	1.10599442759226	446.691130606778	0	11.3201517228313						471	16	4	NaN	NaN	NaN	0.00066443	1	22992	58.313	51.173	2	145180			7089	471	6018	6177	7089	7089	67;68	
GEMMDLQHGSLFLR	14	2 Oxidation (M)	_GEM(Oxidation (M))M(Oxidation (M))DLQHGSLFLR_	GEM(1)M(1)DLQHGSLFLR	GEM(68)M(68)DLQHGSLFLR	0	2	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.928964	1664.76506	0.50522	0.00028086	-0.80203	-0.00044587	-0.29681	-0.00016501	556.263170701604	9.0794	0.22171	9.0794	9.0174	9.2391	0	666	64	0.877991458330206	0.0426897139815897	0.877991458330206	531.862048164932	0	25.8602045593981						824	26	5	NaN	NaN	NaN	0.00014074	1	23468	67.548	59.547	1	375550			7090	471	6018	6178	7090	7090	67;68	
GEMMDLQHGSLFLR	14	2 Oxidation (M)	_GEM(Oxidation (M))M(Oxidation (M))DLQHGSLFLR_	GEM(1)M(1)DLQHGSLFLR	GEM(91)M(91)DLQHGSLFLR	0	2	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.389807	1664.76506	2.8128	0.0023441	0.63505	0.00052924	3.4478	0.0028734	833.390560967748	9.0706	0.10641	9.0706	9.0262	9.1326	0	330	52	1.10399226369747	0.0340367978310923	1.10399226369747	445.846790307099	0	13.7457458392867						432	13	4	NaN	NaN	NaN	0.0015987	1	23472	91.245	86.999	1	84556			7091	471	6018	6178	7091	7091	67;68	
GEMNVTLGIPR	11	Unmodified	_GEMNVTLGIPR_			0	0	0	O95602	O95602	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.816073	1185.61759	0.78149	0.00046406	5.6219	0.0033384	6.4034	0.0038025	593.819845236319	11.208	0.12413	11.208	11.137	11.261	0	588	49	0.93076847747433	0.0324062107488191	0.93076847747433	377.141671907823	0	13.1307976127112						333	15	3	NaN	NaN	NaN	0.058841	1	9030	18.507	4.5126	1	73181			7092	444	6019	6179	7092	7092		
GENLVSMTVEGPPPK	15	Unmodified	_GENLVSMTVEGPPPK_			0	0	0	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.895248	1553.77594	2.1136	0.0016442	-1.42	-0.0011046	0.69361	0.00053956	778.396212068518	10.347	0.38129	10.347	10.17	10.551	0	381	82	1.06991323971056	0.0542226293674211	1.06991323971056	432.338675522191	0	21.9106922822857						1321	44	4	NaN	NaN	NaN	4.9108E-06	1	20177	98.167	95.496	1	423330			7093	701	6020	6180	7093	7093		
GENLVSMTVEGPPPK	15	Oxidation (M)	_GENLVSM(Oxidation (M))TVEGPPPK_	GENLVSM(1)TVEGPPPK	GENLVSM(41)TVEGPPPK	0	1	0	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.892706	1569.77086	2.9391	0.0023098	-2.4313	-0.0019107	0.50776	0.00039905	785.890473338916	7.7398	0.47007	7.7398	7.5624	8.0325	0	384	58	1.06790610341098	0.038151386180588	1.06790610341098	431.488782897265	0	15.4151148086192						474	54	2	NaN	NaN	NaN	0.017902	1	20652	40.83	35.442	1	111420			7094	701	6020	6181	7094	7094	234	
GENPFEIQDHSQDQQIEGDEEDEEK	25	Unmodified	_GENPFEIQDHSQDQQIEGDEEDEEK_			0	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	982.411231	2944.21186	1.442	0.0014167	0.2239	0.00021996	1.6659	0.0016366	982.745850204403	9.0528	0.079823	9.0528	9.0174	9.0972	0	480	37	1.00353128488872	0.0241939396115666	1.00353128488872	605.72678981146	0	14.6033487889035						227	10	3	NaN	NaN	NaN	9.4704E-07	1	38137	45.422	45.388	1	50361			7095	1960	6021	6182	7095	7095		
GENPFTDSPEEEK	13	Unmodified	_GENPFTDSPEEEK_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.817718	1477.62088	1.6112	0.001192	0.91735	0.00067867	2.5286	0.0018707	739.817949651321	6.6225	0.16849	6.6225	6.5338	6.7023	8.8818E-16	462	43	1.01562323939346	0.0282028744341156	1.01562323939346	410.587512517568	0	11.4016178545347						365	20	3	NaN	NaN	NaN	0.0039086	1	17806	38.1	30.099	1	103800			7096	3283	6022	6183	7096	7096		
GENSWFSTQVDTVATK	16	Unmodified	_GENSWFSTQVDTVATK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.420673	1768.82679	2.9048	0.002572	0.6927	0.00061333	3.5975	0.0031853	885.42153797622	12.334	0.33691	12.334	12.281	12.618	0	342	70	1.09598084995137	0.0460561408828231	1.09598084995137	442.39637433551	0	18.5907169302735						1280	39	6	NaN	NaN	NaN	1.7341E-33	1	26376	241.15	215.54	1	1004200			7097	576	6023	6184	7097	7097		
GENVSTTEVEGTLSR	15	Unmodified	_GENVSTTEVEGTLSR_			0	0	0	Q6P1M0	Q6P1M0	Q6P1M0	SLC27A4	Long-chain fatty acid transport protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.883923	1577.75329	3.262	0.0025766	-1.4149	-0.0011176	1.8472	0.0014591	789.883039657307	7.6865	0.10648	7.6865	7.6422	7.7487	0	420	40	1.04379886199097	0.0261323987291064	1.04379886199097	421.729559936959	0	10.5583608273934						198	13	2	NaN	NaN	NaN	0.00014822	1	20900	67.887	57.402	1	82569			7098	2059	6024	6185	7098	7098		
GEPETFLPLDYLEVKPTDEK	20	Unmodified	_GEPETFLPLDYLEVKPTDEK_			0	0	1	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.058013	2319.15221	0.37083	0.00028704	0.01829	1.4157E-05	0.38912	0.0003012	774.392250686318	16.812	0.18633	16.812	16.741	16.927	0	468	55	1.01159370163332	0.0362859024304513	1.01159370163332	611.366471440371	0	21.9297373007722						824	22	5	NaN	NaN	NaN	0.00037746	1	35808	66.66	56.408	1	231680			7099	1764	6025	6186	7099	7099		
GEPGAAEPSACLEAATR	17	Unmodified	_GEPGAAEPSACLEAATR_			0	0	0	Q8IYS2	Q8IYS2	Q8IYS2	KIAA2013	Uncharacterized protein KIAA2013	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.891226	1685.7679	2.4503	0.0020678	-2.9163	-0.002461	-0.46598	-0.00039324	843.887497314695	7.4205	0.28374	7.4205	7.261	7.5447	0	393	76	1.0618830335572	0.0501507801962666	1.0618830335572	428.796902524185	0	20.2512880682277						606	33	4	NaN	NaN	NaN	0.048152	1	24068	32.759	29.88	1	113840			7100	2227	6026	6187	7100	7100		
GEPGGILCFLPGWQEIK	17	Unmodified	_GEPGGILCFLPGWQEIK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.984929	1899.9553	1.6468	0.0015661	-0.29289	-0.00027853	1.354	0.0012876	951.486371189664	19.72	0.062077	19.72	19.694	19.756	0	288	37	1.13199748998575	0.0239780653182871	1.13199748998575	456.689256168909	0	9.67362994304506						173	8	3	NaN	NaN	NaN	0.012614	1	29595	35.45	33.739	1	33719			7101	2114	6027	6188	7101	7101		
GEPVSAEDLGVSGALTVLMK	20	Unmodified	_GEPVSAEDLGVSGALTVLMK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.016623	1972.01869	1.4561	0.0014372	0.7627	0.00075279	2.2188	0.00219	987.519099535188	18.355	0.133	18.355	18.319	18.452	0	186	40	1.1997861197946	0.0258640285956666	1.1997861197946	483.909412691383	0	10.431731690399						396	16	4	NaN	NaN	NaN	2.2722E-07	1	31150	101.52	92.77	1	84747			7102	656	6028	6189	7102	7102		
GEQGYGFHLHGEK	13	Unmodified	_GEQGYGFHLHGEK_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.896869	1457.66878	-0.00011068	-5.389E-08	-0.29942	-0.00014579	-0.29953	-0.00014584	486.896749143436	4.3435	0.14186	4.3435	4.2992	4.4411	0	828	28	0.767766820543916	0.0184411604837688	0.767766820543916	465.635447746885	0	11.1842004487099						265	17	4	NaN	NaN	NaN	0.0043606	1	17175	35.845	29.818	1	77429			7103	1856	6029	6190	7103	7103		
GEQGYGFHLHGEK	13	Unmodified	_GEQGYGFHLHGEK_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.841665	1457.66878	2.2237	0.001623	-0.20149	-0.00014706	2.0223	0.0014759	729.84148752435	4.3435	0.079826	4.3435	4.3169	4.3968	0	459	25	1.01763759082241	0.0161114741282644	1.01763759082241	411.454101792102	0	6.51423667499785						91	10	2	NaN	NaN	NaN	0.0084267	1	17176	39.166	37.909	1	21902			7104	1856	6029	6190	7104	7104		
GEQLFLEPELVIPHR	15	Unmodified	_GEQLFLEPELVIPHR_			0	0	0	Q9NXE4	Q9NXE4	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.99295	1775.95702	0.33334	0.00019767	-0.89432	-0.00053033	-0.56098	-0.00033266	592.992321459123	15.562	0.13301	15.562	15.491	15.624	0	645	19	0.892219381832517	0.0121894422500569	0.892219381832517	540.201818709003	0	7.3802015587296						230	16	3	NaN	NaN	NaN	2.3687E-06	1	26579	97.175	95.191	1	57076			7105	3101	6030	6191	7105	7105		
GEQTSSGTLSAFASYFNSK	19	Unmodified	_GEQTSSGTLSAFASYFNSK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.460527	1980.9065	1.3036	0.0012925	3.2331	0.0032055	4.5367	0.0044979	991.465656669425	15.633	0.15954	15.633	15.553	15.712	-1.7764E-15	219	46	1.17788915118882	0.0298759142347758	1.17788915118882	475.062808270247	0	12.0494663709984						394	19	4	NaN	NaN	NaN	0.0012837	1	31299	42.218	35.696	1	73079			7106	1489	6031	6192	7106	7106		
GESDDFHMDFDSAVAPR	17	Unmodified	_GESDDFHMDFDSAVAPR_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.60034	1894.77919	0.056787	3.5924E-05	-0.64475	-0.00040787	-0.58796	-0.00037195	632.599981685865	11.616	0.12407	11.616	11.58	11.704	0	636	49	0.898312834727904	0.0325051879347241	0.898312834727904	543.627126191303	0	19.6709890142165						536	15	4	NaN	NaN	NaN	0.0013767	1	29483	54.309	52.325	1	141620			7107	652	6032	6193	7107	7107		
GESDDFHMDFDSAVAPR	17	Unmodified	_GESDDFHMDFDSAVAPR_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.396872	1894.77919	1.685	0.001598	1.301	0.0012339	2.986	0.0028319	948.899878420475	11.616	0.10635	11.616	11.58	11.687	0	276	43	1.13998907770044	0.0279667154484231	1.13998907770044	459.922458387028	0	11.2830208408621						220	13	3	NaN	NaN	NaN	0.06157	1	29484	4.3065	2.5962	1	41329			7108	652	6032	6193	7108	7108		
GESDPAYQQYQDAANNLR	18	Unmodified	_GESDPAYQQYQDAANNLR_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.639963	2038.89806	1.2409	0.00084462	0.46809	0.0003186	1.709	0.0011632	680.974372064648	9.7977	0.070919	9.7977	9.78	9.8509	0	633	58	0.900343422309015	0.0385865321490887	0.900343422309015	544.576194452635	0	23.3392129205369						357	9	3	NaN	NaN	NaN	2.4565E-07	1	32321	121.69	120.6	1	79684			7109	680	6033	6194	7109	7109		
GESDPAYQQYQDAANNLR	18	Unmodified	_GESDPAYQQYQDAANNLR_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.45631	2038.89806	2.9678	0.0030285	-0.82018	-0.00083696	2.1477	0.0021916	1020.95703580402	9.7889	0.18629	9.7889	9.6913	9.8776	0	246	67	1.1599488233373	0.0438873183410309	1.1599488233373	467.734581739244	0	17.6970018632711						950	22	5	NaN	NaN	NaN	4.348E-10	1	32322	105.78	102.49	1	259920			7110	680	6033	6194	7110	7110		
GESDPAYQQYQDAANNLREDYK	22	Unmodified	_GESDPAYQQYQDAANNLREDYK_			0	0	1	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.049239	2574.12589	1.9123	0.0016427	-0.75961	-0.00065254	1.1527	0.0009902	859.382779194972	10.888	0.14189	10.888	10.826	10.968	0	564	49	0.946969335010767	0.0323837789841732	0.946969335010767	571.972552302764	0	19.5599076273949						521	17	4	NaN	NaN	NaN	6.1479E-06	1	37131	56.473	53.568	1	110700			7111	680	6034	6195	7111	7111		
GESEDDFWWCIDR	13	Unmodified	_GESEDDFWWCIDR_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.843744	1713.67294	1.2137	0.0010411	-0.65571	-0.0005625	0.55795	0.00047863	857.843456448014	15.978	0.097517	15.978	15.925	16.023	0	423	37	1.04178812298108	0.0241272072846639	1.04178812298108	420.626548746749	0	9.74146633770943						293	12	4	NaN	NaN	NaN	4.181E-11	1	24867	108.2	105.89	1	63833			7112	242	6035	6196	7112	7112		
GESQTDIEITREEDFTR	17	Unmodified	_GESQTDIEITREEDFTR_			0	0	1	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.983507	2024.92869	0.72275	0.00048857	1.074	0.00072601	1.7968	0.0012146	676.318656224817	8.5736	0.088657	8.5736	8.5382	8.6268	0	621	61	0.908462957275599	0.0406033237034125	0.908462957275599	549.512936414522	0	24.5602216994773						427	11	4	NaN	NaN	NaN	0.0025072	1	32053	66.485	62.635	1	103960			7113	1129	6036	6197	7113	7113		
GETAVPGAPEALR	13	Unmodified	_GETAVPGAPEALR_			0	0	0	A6NDG6	A6NDG6	A6NDG6	PGP	Phosphoglycolate phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.335684	1266.65681	1.2705	0.00080592	0.04421	2.8044E-05	1.3147	0.00083396	634.335934990132	7.5092	0.14184	7.5092	7.4294	7.5713	0	567	55	0.944945209309785	0.0364267103222841	0.944945209309785	382.604115159717	0	14.749013100153						351	17	4	NaN	NaN	NaN	0.0057531	1	11418	36.514	31.975	1	76718			7114	12	6037	6198	7114	7114		
GETTLWNPGCDHAGIATQVVVEK	23	Unmodified	_GETTLWNPGCDHAGIATQVVVEK_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.072551	2481.19582	0.5924	0.00049055	0.96573	0.00079969	1.5581	0.0012902	828.407432615866	11.917	0.08868	11.917	11.89	11.979	0	537	46	0.965173861991602	0.0303115059679868	0.965173861991602	583.0853783331	0	18.3119297167036						365	11	5	NaN	NaN	NaN	0.00039545	1	36734	38.668	34.296	1	73552			7115	858	6038	6199	7115	7115		
GETVNDCHAEIISR	14	Unmodified	_GETVNDCHAEIISR_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.872836	1599.73112	2.6538	0.0021253	-1.6641	-0.0013327	0.98971	0.00079263	800.871536290423	4.7958	0.07093	4.7958	4.7691	4.8401	0	399	67	1.0578662689527	0.0442210248347901	1.0578662689527	427.36216798495	0	17.8646333648788						324	9	3	NaN	NaN	NaN	9.6005E-08	1	21566	106.97	94.375	1	66174			7116	1273	6039	6200	7116	7116		
GETVNDCHAEIISR	14	Unmodified	_GETVNDCHAEIISR_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.250983	1599.73112	0.49377	0.0002638	2.5724	0.0013743	3.0661	0.0016381	534.252618877852	4.7958	0.07093	4.7958	4.7691	4.8401	0	732	61	0.833184998970724	0.0407727738696773	0.833184998970724	504.888692093866	0	24.7072528880512						245	9	3	NaN	NaN	NaN	0.036114	1	21567	26.517	25.635	1	54277			7117	1273	6039	6200	7117	7117		
GEVDEEDAALYR	12	Unmodified	_GEVDEEDAALYR_			0	0	0	Q9NPQ8	Q9NPQ8	Q9NPQ8	RIC8A	Synembryn-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.809696	1365.60484	1.4862	0.0010163	-2.4667	-0.0016868	-0.98048	-0.00067046	683.808487392917	6.9505	0.15066	6.9505	6.8974	7.0481	0	540	31	0.963152256458504	0.0202146590130609	0.963152256458504	389.671181928245	0	8.17842663719625						212	18	3	NaN	NaN	NaN	0.016891	1	14354	28.647	20.173	1	51087			7118	2994	6040	6201	7118	7118		
GEVDVSLANVEGDLK	15	Unmodified	_GEVDVSLANVEGDLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.89376	1543.77297	2.3388	0.0018076	-0.16167	-0.00012496	2.1771	0.0016827	772.893331318404	13.54	0.18622	13.54	13.451	13.637	0	408	52	1.0518390438467	0.0341589991885669	1.0518390438467	425.059435840526	0	13.8040178380043						502	22	3	NaN	NaN	NaN	1.7965E-06	1	19854	99.589	67.04	1	179150			7119	1584	6041	6202	7119	7119		
GEVITTYCPANNEPIAR	17	Unmodified	_GEVITTYCPANNEPIAR_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.962182	1903.90981	2.6113	0.0024885	-1.8638	-0.0017761	0.74757	0.00071241	952.960103282258	9.0617	0.19511	9.0617	8.973	9.1681	0	264	67	1.14797626962532	0.043953756762201	1.14797626962532	463.128712521299	0	17.7322888271867						774	23	4	NaN	NaN	NaN	1.2103E-06	1	29686	72.327	49.932	1	206060			7120	1132	6042	6203	7120	7120		
GEVLGDVLQLETLK	14	Unmodified	_GEVLGDVLQLETLK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.427239	1512.83992	0.64851	0.0004912	0.38674	0.00029293	1.0352	0.00078412	757.427835790243	16.732	0.12416	16.732	16.688	16.812	0	360	79	1.08395544855938	0.052181987960398	1.08395544855938	438.117616637976	0	21.0911326909471						673	15	3	NaN	NaN	NaN	0.00015976	1	18903	110.44	97.844	1	232260			7121	1782	6043	6204	7121	7121		
GEVPCTVTSASPLEEATLSELK	22	Unmodified	_GEVPCTVTSASPLEEATLSELK_			0	0	0	P48047	P48047	P48047	ATP5O	ATP synthase subunit O, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1159.57523	2317.13591	0.73943	0.00085743	-0.81961	-0.0009504	-0.080178	-9.2973E-05	1160.07520920678	15.18	0.1862	15.18	15.083	15.269	0	60	94	1.28308947459206	0.0613973543482473	1.28308947459206	516.969070621197	0	24.7375836561242						1196	22	5	NaN	NaN	NaN	4.4899E-08	1	35791	105.79	99.886	1	321060			7122	1104	6044	6205	7122	7122		
GEVTEMFSYEESNPK	15	Unmodified	_GEVTEMFSYEESNPK_			0	0	0	Q8TCT9	Q8TCT9	Q8TCT9	HM13	Minor histocompatibility antigen H13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.879992	1745.74543	2.8222	0.0024662	0.67982	0.00059408	3.502	0.0030603	873.880274428655	10.729	0.19508	10.729	10.684	10.879	0	327	46	1.10599442759226	0.0300407400465015	1.10599442759226	446.484293658781	0	12.1272931092869						442	23	4	NaN	NaN	NaN	1.1356E-11	1	25765	119.43	114.9	1	125460			7123	2346	6045	6206	7123	7123		
GEYNVYSTFQSHEPEFDYLK	20	Unmodified	_GEYNVYSTFQSHEPEFDYLK_			0	0	0	P63151;Q66LE6;Q00005	P63151	P63151	PPP2R2A;PPP2R2D;PPP2R2B	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.36925	2452.08592	1.2354	0.001011	-0.60553	-0.00049555	0.62987	0.00051547	818.703010457498	14.32	0.15072	14.32	14.258	14.409	0	543	94	0.961130371139249	0.0626091801760076	0.961130371139249	580.680993891077	0	37.8262534022477						1023	18	5	NaN	NaN	NaN	1.7674E-07	1	36584	98.895	98.46	1	243270			7124	1428	6046	6207	7124	7124		
GEYQGVFHCAVETAK	15	Unmodified	_GEYQGVFHCAVETAK_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.393404	1694.77226	3.3054	0.0028043	-1.5608	-0.0013241	1.7447	0.0014802	848.392583856488	7.7221	0.09762	7.7221	7.6777	7.7753	0	255	43	1.15396378101328	0.0279436470616286	1.15396378101328	465.959656126389	0	11.2833802845359						311	12	4	NaN	NaN	NaN	3.5545E-06	1	24330	91.993	87.164	1	94347			7125	3194	6047	6208	7125	7125		
GFAFVEFSHLQDATR	15	Unmodified	_GFAFVEFSHLQDATR_			0	0	0	P98175	P98175	P98175	RBM10	RNA-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.617883	1723.83182	-0.84441	-0.00048606	-0.68036	-0.00039163	-1.5248	-0.00087768	575.61750560264	14.205	0.1064	14.205	14.169	14.276	0	717	37	0.84338031290707	0.0244602575158872	0.84338031290707	510.751249703368	0	14.8131357859691						295	13	4	NaN	NaN	NaN	0.0009373	1	25154	44.045	38.017	1	80498			7126	1490	6048	6209	7126	7126		
GFAFVEFSHLQDATR	15	Unmodified	_GFAFVEFSHLQDATR_			0	0	0	P98175	P98175	P98175	RBM10	RNA-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.923186	1723.83182	2.0826	0.0017971	0.89021	0.00076819	2.9728	0.0025653	863.425465834516	14.196	0.097546	14.196	14.161	14.258	0	246	40	1.1599488233373	0.0259351883053607	1.1599488233373	468.312301868318	0	10.4709513819127						356	12	4	NaN	NaN	NaN	7.7075E-05	1	25156	99.589	93.561	1	101140			7127	1490	6048	6209	7127	7127		
GFAFVEYESHR	11	Unmodified	_GFAFVEYESHR_			0	0	0	A0AV96;Q9NQ94;Q8TBY0	A0AV96	A0AV96	RBM47;A1CF;RBM46	RNA-binding protein 47;APOBEC1 complementation factor;Probable RNA-binding protein 46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.878926	1340.61495	-1.4007	-0.00062735	0.4583	0.00020527	-0.94242	-0.00042209	448.213619971612	9.2125	0.062096	9.2125	9.177	9.2391	0	813	16	0.778007628350577	0.0102365298339488	0.778007628350577	472.232885246789	0	6.21334012964485						57	8	2	NaN	NaN	NaN	0.071484	1	13602	5.1508	0.61121	1	11945			7128	2	6049	6210	7128	7128		
GFAFVQYVNER	11	Unmodified	_GFAFVQYVNER_			0	0	0	P07910	P07910	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.332944	1328.65134	1.1725	0.00078011	0.54466	0.00036238	1.7172	0.0011425	665.333462483689	13.034	0.2483	13.034	12.963	13.212	0	477	46	1.0055473068722	0.0302403378372377	1.0055473068722	406.936686493021	0	12.2380148540133						398	29	2	NaN	NaN	NaN	2.7872E-05	1	13243	98.009	84.014	1	485730			7129	568	6050	6211	7129	7129		
GFAFVTFDDHDSVDK	15	Unmodified	_GFAFVTFDDHDSVDK_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.258132	1698.75257	0.21907	0.00012427	-0.3462	-0.00019638	-0.12713	-7.2113E-05	567.25791153304	12.697	0.38132	12.697	12.591	12.972	0	732	88	0.833184998970724	0.0591904490895742	0.833184998970724	504.636312662171	0	35.8499613054485						1768	44	6	NaN	NaN	NaN	5.5104E-07	1	24449	112.7	107.55	1	2329800			7130	608	6051	6212	7130	7130		
GFAFVTFDDHDSVDK	15	Unmodified	_GFAFVTFDDHDSVDK_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.383559	1698.75257	2.6448	0.0022491	0.69619	0.00059203	3.341	0.0028411	850.384222579113	12.697	0.43452	12.697	12.644	13.079	0	294	64	1.12800004657306	0.0419876198535674	1.12800004657306	455.467081059053	0	16.9538810866378						1881	50	6	NaN	NaN	NaN	7.3666E-33	1	24450	224.49	198.9	1	2088000			7131	608	6051	6212	7131	7131		
GFAFVTFDDHDTVDK	15	Unmodified	_GFAFVTFDDHDTVDK_			0	0	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.930015	1712.76822	0.31613	0.0001808	-1.002	-0.00057308	-0.68588	-0.00039228	571.929495407333	12.83	0.17736	12.83	12.777	12.955	0	726	49	0.837263974740672	0.0326272809227941	0.837263974740672	507.07329091692	0	19.7601033966814						721	21	5	NaN	NaN	NaN	3.0771E-06	1	24841	105.94	99.566	1	506000			7132	1204	6052	6213	7132	7132		
GFAFVTFDDHDTVDK	15	Unmodified	_GFAFVTFDDHDTVDK_			0	0	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.391384	1712.76822	3.2552	0.0027909	0.23042	0.00019756	3.4856	0.0029885	857.391656851825	12.83	0.23943	12.83	12.777	13.017	0	276	52	1.13998907770044	0.0339619226468326	1.13998907770044	460.277564664461	0	13.7123340503746						817	28	5	NaN	NaN	NaN	3.8638E-06	1	24843	115.04	88.09	1	501000			7133	1204	6052	6213	7133	7133		
GFAFVTFESPADAK	14	Unmodified	_GFAFVTFESPADAK_			0	0	0	P38159;Q96E39;O75526;Q8N7X1	P38159	P38159	RBMX;RBMXL1;RBMXL2;RBMXL3	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1;RNA-binding motif protein, X-linked-like-2;RNA-binding motif protein, X-linked-like-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.864274	1485.714	0.66351	0.00049356	0.14128	0.00010509	0.80479	0.00059865	743.864147275752	14.79	0.27489	14.79	14.684	14.959	0	435	85	1.03374239103424	0.0563046300275727	1.03374239103424	417.891450367323	0	22.7612059916372						1578	32	5	NaN	NaN	NaN	7.1148E-06	1	18089	90.306	78.349	1	716520			7134	1004	6053	6214	7134	7134		
GFAFVYFENVDDAK	14	Unmodified	_GFAFVYFENVDDAK_			0	0	0	P62995	P62995	P62995	TRA2B	Transformer-2 protein homolog beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.380288	1620.74602	1.852	0.0015027	4.0018	0.003247	5.8538	0.0047497	811.383483806979	16.227	0.12414	16.227	16.191	16.315	0	330	61	1.10399226369747	0.0400350261714058	1.10399226369747	445.946718168916	0	16.1717514877781						533	15	4	NaN	NaN	NaN	0.018503	1	22209	57.293	42.838	1	134040			7135	1421	6054	6215	7135	7135		
GFAFVYFER	9	Unmodified	_GFAFVYFER_			0	0	0	Q13595	Q13595	Q13595	TRA2A	Transformer-2 protein homolog alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.282192	1134.54983	0.42253	0.00024012	1.2612	0.0007167	1.6837	0.00095682	568.283033022552	15.074	0.097535	15.074	15.038	15.136	0	609	46	0.916577990479294	0.0304292729379168	0.916577990479294	371.584013462919	0	12.3361366762877						252	12	3	NaN	NaN	NaN	0.011181	1	7649	36.211	30.463	1	65714			7136	1688	6055	6216	7136	7136		
GFASQVEQLISMGANVHSK	19	Unmodified	_GFASQVEQLISMGANVHSK_			0	0	0	Q9H6S0	Q9H6S0	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.33868	2001.99421	-0.77715	-0.0005194	0.05694	3.8055E-05	-0.72021	-0.00048134	668.339253222125	17.016	0.088676	17.016	16.98	17.069	0	561	19	0.948993180460448	0.0121422325843117	0.948993180460448	574.073675865862	0	7.34519092066819						145	11	4	NaN	NaN	NaN	0.0006635	1	31672	66.509	56.488	1	27811			7137	2907	6056	6217	7137	7137		
GFAVLEYETAEMAEEAQQQADGLSLGGSHLR	31	Unmodified	_GFAVLEYETAEMAEEAQQQADGLSLGGSHLR_			0	0	0	Q8IY67	Q8IY67	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1103.18937	3306.54628	0.47672	0.00052591	1.1315	0.0012482	1.6082	0.0017741	1103.52502107863	19.392	0.070968	19.392	19.357	19.428	0	102	40	1.25537494996371	0.0257648959853833	1.25537494996371	757.347800254299	0	15.5435531821588						212	9	5	NaN	NaN	NaN	6.6694E-07	1	38548	43.865	42.646	1	32482			7138	2219	6057	6218	7138	7138		
GFAYIEFSDK	10	Unmodified	_GFAYIEFSDK_			0	0	0	Q86U42	Q86U42	Q86U42	PABPN1	Polyadenylate-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.782222	1175.54989	0.65724	0.00038697	0.89581	0.00052744	1.5531	0.00091441	588.782532519999	12.219	0.19505	12.219	12.13	12.325	0	597	43	0.924688525662974	0.0283868792767229	0.924688525662974	374.715040371755	0	11.5033228151923						395	23	4	NaN	NaN	NaN	0.0094968	1	8746	40.502	35.351	1	85233			7139	2161	6058	6219	7139	7139		
GFAYVQFEDVR	11	Unmodified	_GFAYVQFEDVR_			0	0	0	O75494;Q8WXF0	O75494	O75494	SRSF10;SRSF12	Serine/arginine-rich splicing factor 10;Serine/arginine-rich splicing factor 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.824952	1329.63535	1.2475	0.00083064	1.4216	0.00094651	2.6691	0.0017771	665.825768307255	12.662	0.15964	12.662	12.618	12.777	0	462	37	1.01562323939346	0.024173890872869	1.01562323939346	411.01119837246	0	9.78289927957599						308	19	4	NaN	NaN	NaN	0.0015227	1	13270	67.507	57.419	1	138750			7140	339	6059	6220	7140	7140		
GFAYVQFEDVRDAEDALHNLDR	22	Unmodified	_GFAYVQFEDVRDAEDALHNLDR_			0	0	1	O75494	O75494	O75494	SRSF10	Serine/arginine-rich splicing factor 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	645.808296	2579.20408	-0.42076	-0.00027173	-0.28908	-0.00018669	-0.70984	-0.00045842	646.058713768489	16.289	0.09753	16.289	16.253	16.351	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	733.24431963606	0	14.7073921881047						188	12	4	NaN	NaN	NaN	7.3075E-06	1	37155	47.491	42.398	1	51217			7141	339	6060	6221	7141	7141		
GFAYVQFEDVRDAEDALHNLDR	22	Unmodified	_GFAYVQFEDVRDAEDALHNLDR_			0	0	1	O75494	O75494	O75494	SRSF10	Serine/arginine-rich splicing factor 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.74197	2579.20408	1.298	0.0011172	1.4811	0.0012749	2.7791	0.0023921	861.411570410176	16.298	0.097519	16.298	16.262	16.36	0	357	19	1.08596037261705	0.012028715983686	1.08596037261705	655.916646902942	0	7.26530659268303						154	12	4	NaN	NaN	NaN	7.4945E-06	1	37156	64.21	57.639	1	32161			7142	339	6060	6221	7142	7142		
GFCFITFK	8	Unmodified	_GFCFITFK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.254588	1018.49462	-0.7227	-0.00036876	-0.56703	-0.00028933	-1.2897	-0.00065809	510.254328337761	14.71	0.34586	14.71	14.639	14.985	0	714	55	0.845418525735192	0.0366903942438199	0.845418525735192	343.204183950274	0	14.8947490881082						1006	40	5	NaN	NaN	NaN	0.027079	1	4701	58.286	44.638	1	1262100			7143	1717	6061	6222	7143	7143		
GFCFITYTDEEPVK	14	Unmodified	_GFCFITYTDEEPVK_			0	0	0	O14979	O14979	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.392538	1704.77052	2.5406	0.0021682	-0.11552	-9.8582E-05	2.4251	0.0020696	853.392627512114	13.957	0.26601	13.957	13.859	14.125	0	342	61	1.09598084995137	0.0400626050188091	1.09598084995137	442.525639069639	0	16.1761310788685						855	31	4	NaN	NaN	NaN	1.6212E-11	1	24618	150.21	148.5	1	493350			7144	134	6062	6223	7144	7144		
GFCFLEYEDHK	11	Unmodified	_GFCFLEYEDHK_			0	0	0	O43390;O60506	O43390;O60506	O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.211577	1443.6129	-1.0225	-0.00049304	0.037097	1.7889E-05	-0.98536	-0.00047515	482.211843665447	11.146	0.37247	11.146	11.083	11.456	0	789	136	0.794378096728713	0.0918601525060989	0.794378096728713	481.818701180591	0	55.716464934021						1969	43	6	NaN	NaN	NaN	2.7653E-05	1	16765	90.761	75.999	1	2319000			7145	263;196	6063	6224	7145	7145		
GFCFLEYEDHK	11	Unmodified	_GFCFLEYEDHK_			0	0	0	O43390;O60506	O43390;O60506	O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.813727	1443.6129	1.857	0.0013423	1.1206	0.00081001	2.9776	0.0021523	722.814655722778	11.146	0.20395	11.146	11.092	11.296	0	447	43	1.02569221487577	0.0281834048046041	1.02569221487577	414.748726846751	0	11.3962366988736						628	24	5	NaN	NaN	NaN	2.5169E-11	1	16766	105.36	100.21	1	354590			7146	263;196	6063	6224	7146	7146		
GFCYVEFDEVDSLK	14	Unmodified	_GFCYVEFDEVDSLK_			0	0	0	Q15056	Q15056	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.382171	1706.74979	2.1751	0.0018584	1.9418	0.001659	4.1169	0.0035174	854.383900434057	15.083	0.17734	15.083	15.038	15.216	0	264	112	1.14797626962532	0.0739172201811422	1.14797626962532	463.515555934188	0	29.8453742572171						1654	21	5	NaN	NaN	NaN	2.424E-11	1	24670	156.14	150.99	1	848250			7147	1804	6064	6225	7147	7147		
GFDILGIK	8	Unmodified	_GFDILGIK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.755278	861.496004	-2.3035	-0.00099453	-0.75992	-0.0003281	-3.0634	-0.0013226	431.754750163775	14.427	0.14189	14.427	14.382	14.524	1.7764E-15	777	31	0.802556497112065	0.020440313348464	0.802556497112065	326.594357705774	0	8.31803247916912						224	17	3	NaN	NaN	NaN	0.032625	1	1744	32.128	22.049	1	76858			7148	1250	6065	6226	7148	7148		
GFDPNQLSVATLLFEGDREK	20	Unmodified	_GFDPNQLSVATLLFEGDREK_			0	0	1	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.04633	2235.11716	0.38292	0.00028567	1.479	0.0011034	1.8619	0.0013891	746.382093982301	18	0.13301	18	17.938	18.071	0	435	34	1.03374239103424	0.0221334029246503	1.03374239103424	624.892027933633	0	13.379529715154						307	16	4	NaN	NaN	NaN	1.8624E-05	1	35044	44.853	44.418	1	99263			7149	49	6066	6227	7149	7149		
GFDQDMANK	9	Unmodified	_GFDQDMANK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.221474	1024.42839	1.0316	0.00052943	0.836	0.00042905	1.8676	0.00095849	513.22200551493	4.1041	0.37245	4.1041	4.042	4.4145	0	720	37	0.841341816837976	0.0244636567629751	0.841341816837976	341.522829170316	0	9.93044337311454						707	43	4	NaN	NaN	NaN	0.0077424	1	4843	78.178	62.68	1	265320			7150	1914	6067	6228	7150	7150		
GFDQTINLILDESHER	16	Unmodified	_GFDQTINLILDESHER_			0	0	0	O95777	O95777	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.646278	1885.91701	0.15641	9.8482E-05	-0.97574	-0.00061437	-0.81933	-0.00051589	629.64570348277	16.218	0.18619	16.218	16.165	16.351	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	551.016411640395	0	14.7353401178939						536	22	5	NaN	NaN	NaN	0.0002211	1	29283	45.654	40.266	1	297130			7151	451	6068	6229	7151	7151		
GFDQTINLILDESHER	16	Unmodified	_GFDQTINLILDESHER_			0	0	0	O95777	O95777	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.965779	1885.91701	1.2867	0.0012146	0.79341	0.00074895	2.0801	0.0019635	943.96654205422	16.209	0.13299	16.209	16.165	16.298	0	159	43	1.21767724410157	0.0278210963639134	1.21767724410157	491.282113604369	0	11.2246550476837						454	16	4	NaN	NaN	NaN	1.9694E-12	1	29284	118.26	96.9	1	146040			7152	451	6068	6229	7152	7152		
GFDTSSSSSNSAASSSFK	18	Unmodified	_GFDTSSSSSNSAASSSFK_			0	0	0	P49790	P49790	P49790	NUP153	Nuclear pore complex protein Nup153	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.379202	1752.74385	2.2936	0.0020123	-0.46528	-0.00040822	1.8283	0.0016041	877.378433396405	5.4342	0.070903	5.4342	5.4164	5.4873	0	363	40	1.08195024817156	0.0260747970563766	1.08195024817156	436.76404497556	0	10.525931163199						156	9	3	NaN	NaN	NaN	0.00011147	1	25962	81.578	71.327	1	27562			7153	1150	6069	6230	7153	7153		
GFDVFNALDLMENK	14	Unmodified	_GFDVFNALDLMENK_			0	0	0	P30419;O60551	P30419	P30419	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.887423	1611.76029	1.5017	0.0012117	-0.28516	-0.00023009	1.2165	0.00098159	806.887095826704	19.667	0.08868	19.667	19.632	19.72	0	375	55	1.07392668217569	0.036130958221537	1.07392668217569	433.822535314122	0	14.5954320338151						385	11	5	NaN	NaN	NaN	1.3572E-07	1	21946	124.06	108.18	1	144150			7154	909	6070	6231	7154	7154		
GFESPSDNSSAMLLQWHEK	19	Unmodified	_GFESPSDNSSAMLLQWHEK_			0	0	0	O15511	O15511	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.665233	2161.97387	1.1368	0.00082036	3.8179	0.0027553	4.9547	0.0035756	722.000969491015	12.405	0.18621	12.405	12.352	12.538	0	477	43	1.0055473068722	0.0282262646321653	1.0055473068722	607.975148723752	0	17.0661960112412						352	22	4	NaN	NaN	NaN	0.00050752	1	34201	63.79	61.489	1	93065			7155	179	6071	6232	7155	7155		
GFETVSYLLEGGSMAHEDFCGHTGK	25	Unmodified	_GFETVSYLLEGGSMAHEDFCGHTGK_			0	0	0	O00625	O00625	O00625	PIR	Pirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	910.40386	2728.18975	0.67913	0.00061828	1.9545	0.0017794	2.6336	0.0023977	910.740054625094	14.764	0.10642	14.764	14.728	14.834	0	372	37	1.07593298845566	0.0240806587960416	1.07593298845566	649.669885629404	0	14.5403840329873						360	13	5	NaN	NaN	NaN	8.1272E-07	1	37679	64.21	60.982	1	76631			7156	95	6072	6233	7156	7156		
GFEVVYMTEPIDEYCVQQLK	20	Unmodified	_GFEVVYMTEPIDEYCVQQLK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1224.57672	2447.13888	0.33262	0.00040732	-0.98699	-0.0012086	-0.65437	-0.00080132	1225.07748564835	16.98	0.23058	16.98	16.91	17.14	0	63	106	1.28111162701928	0.0693386086324017	1.28111162701928	516.008648825843	0	27.9283405109016						1843	27	7	NaN	NaN	NaN	9.5441E-29	1	36561	179.21	39.504	1	676900			7157	579	6073	6234	7157	7157		
GFEVVYMTEPIDEYCVQQLK	20	Unmodified	_GFEVVYMTEPIDEYCVQQLK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.720238	2447.13888	0.59648	0.00048716	-1.1467	-0.00093654	-0.55023	-0.00044938	817.054118916167	16.972	0.14185	16.972	16.936	17.078	0	396	79	1.05987478976334	0.0522684352522458	1.05987478976334	640.346175757299	0	31.5791006162785						1036	17	6	NaN	NaN	NaN	6.1173E-11	1	36562	137.39	45.452	1	347380			7158	579	6073	6234	7158	7158		
GFEVVYMTEPIDEYCVQQLK	20	Oxidation (M)	_GFEVVYM(Oxidation (M))TEPIDEYCVQQLK_	GFEVVYM(1)TEPIDEYCVQQLK	GFEVVYM(110)TEPIDEYCVQQLK	0	1	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1232.57418	2463.1338	0.83907	0.0010342	-0.16413	-0.00020231	0.67493	0.00083191	1233.07514951211	15.047	0.09754	15.047	15.012	15.109	0	60	58	1.28308947459206	0.0376048516734613	1.28308947459206	516.786327035803	0	15.1459999944529						563	12	5	NaN	NaN	NaN	1.8259E-15	1	36636	105.08	26.921	1	136840			7159	579	6073	6235	7159	7159	151	
GFEVVYMTEPIDEYCVQQLK	20	Oxidation (M)	_GFEVVYM(Oxidation (M))TEPIDEYCVQQLK_	GFEVVYM(1)TEPIDEYCVQQLK	GFEVVYM(93)TEPIDEYCVQQLK	0	1	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.051876	2463.1338	1.3809	0.0011352	0.57904	0.000476	1.9599	0.0016112	822.386430444273	15.047	0.13301	15.047	14.976	15.109	0	417	97	1.04580932352505	0.0642594479765426	1.04580932352505	631.825052778173	0	38.8223055541565						620	16	4	NaN	NaN	NaN	1.4557E-05	1	36637	92.747	33.077	1	163960			7160	579	6073	6235	7160	7160	151	
GFFDPNTEENLTYLQLK	17	Unmodified	_GFFDPNTEENLTYLQLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.99929	2027.98402	0.71425	0.00072496	2.7122	0.0027528	3.4264	0.0034778	1015.50310498238	17.043	0.22167	17.043	16.972	17.193	0	159	61	1.21767724410157	0.0397389804698309	1.21767724410157	491.030691673869	0	16.0248203380959						1122	26	5	NaN	NaN	NaN	3.9453E-34	1	32111	179.21	167.73	1	449160			7161	718	6074	6236	7161	7161		
GFFDPNTEENLTYLQLMER	19	Unmodified	_GFFDPNTEENLTYLQLMER_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1159.0439	2316.07325	0.16712	0.0001937	1.4326	0.0016604	1.5997	0.0018541	1159.5469987595	18.648	0.079806	18.648	18.612	18.692	0	90	37	1.26329880838669	0.0237683228078447	1.26329880838669	508.996606736461	0	9.57651157168397						237	10	3	NaN	NaN	NaN	0.0037065	1	35782	47.844	47.033	1	89193			7162	1816	6075	6237	7162	7162		
GFFDPNTHENLTYLQLLER	19	Unmodified	_GFFDPNTHENLTYLQLLER_			0	0	0	Q15149;P58107	Q15149;P58107	Q15149	PLEC;EPPK1	Plectin;Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.718325	2306.13315	0.2653	0.00020421	-0.8042	-0.00061901	-0.5389	-0.0004148	770.05200223617	17.309	0.19509	17.309	17.22	17.415	0	579	85	0.936845902828289	0.056726618392489	0.936845902828289	566.210941206854	0	34.284434499342						770	23	6	NaN	NaN	NaN	1.1467E-14	1	35681	139.94	135.1	1	396440			7163	1816;1298	6076	6238	7163	7163		
GFFDPNTHENLTYR	14	Unmodified	_GFFDPNTHENLTYR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.933871	1709.77978	-0.18517	-0.00010572	-0.56413	-0.00032208	-0.7493	-0.0004278	570.933683654448	9.9573	0.16845	9.9573	9.9041	10.073	0	729	46	0.835224628594324	0.030590200468438	0.835224628594324	505.845286203139	0	18.5266432301103						596	20	5	NaN	NaN	NaN	0.00012229	1	24736	79.889	75.643	1	281190			7164	1816	6077	6239	7164	7164		
GFFDPNTHENLTYR	14	Unmodified	_GFFDPNTHENLTYR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.897168	1709.77978	2.7099	0.0023194	1.32	0.0011298	4.0299	0.0034492	855.897256135711	9.9573	0.25713	9.9573	9.8243	10.081	0	339	55	1.09798411722691	0.0360762165045725	1.09798411722691	443.324021033677	0	14.5661973734938						505	30	5	NaN	NaN	NaN	0.0024161	1	24738	44.045	41.743	1	106840			7165	1816	6077	6239	7165	7165		
GFFDPNTHENLTYVQLLR	18	Unmodified	_GFFDPNTHENLTYVQLLR_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.032244	2163.0749	-0.22304	-0.00016104	0.028569	2.0628E-05	-0.19447	-0.00014041	722.366653459991	15.916	0.10644	15.916	15.872	15.978	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	552.954263240886	0	13.490084412488						327	13	5	NaN	NaN	NaN	0.0063178	1	34224	42.941	39.091	1	78570			7166	1298	6078	6240	7166	7166		
GFFEGTIASK	10	Unmodified	_GFFEGTIASK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.771657	1055.52876	0.28811	0.00015235	0.68712	0.00036333	0.97524	0.00051568	528.771545051338	9.6026	0.23053	9.6026	9.4608	9.6913	0	657	52	0.884090832094921	0.0345727248070983	0.884090832094921	358.735564601501	0	14.0284974159251						375	27	3	NaN	NaN	NaN	0.04101	1	5604	34.953	27.306	1	121720			7167	1241	6079	6241	7167	7167		
GFGDGGGAPSWAPEDAWMGTHPK	23	Unmodified	_GFGDGGGAPSWAPEDAWMGTHPK_			0	0	0	Q8WW01	Q8WW01	Q8WW01	TSEN15	tRNA-splicing endonuclease subunit Sen15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.676132	2327.00657	1.4892	0.0011567	0.78224	0.00060755	2.2715	0.0017642	777.010943080075	13.504	0.079794	13.504	13.469	13.549	0	477	52	1.0055473068722	0.0342629150938795	1.0055473068722	607.700062187632	0	20.7067091632382						310	10	4	NaN	NaN	NaN	0.00032157	1	35866	33.5	32.405	1	65981			7168	2385	6080	6242	7168	7168		
GFGDHIHWR	9	Unmodified	_GFGDHIHWR_			0	0	0	O95881	O95881	O95881	TXNDC12	Thioredoxin domain-containing protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	375.517663	1123.53116	-0.8962	-0.00033654	-0.97662	-0.00036674	-1.8728	-0.00070328	375.517452406977	6.5161	0.133	6.5161	6.4806	6.6136	0	903	22	0.716455593386714	0.0143912031674811	0.716455593386714	435.727087320561	0	8.75230383723209						186	16	3	NaN	NaN	NaN	0.037921	1	7356	30.562	28.194	1	50903			7169	461	6081	6243	7169	7169		
GFGFGGFAISAGK	13	Unmodified	_GFGFGGFAISAGK_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.31148	1214.60841	-0.5955	-0.00036225	-0.15279	-9.2946E-05	-0.74829	-0.00045519	608.31251020785	14.817	0.17734	14.817	14.772	14.95	-1.7764E-15	591	37	0.928742107665821	0.0243147574808095	0.928742107665821	376.217288495531	0	9.84948572305717						316	21	4	NaN	NaN	NaN	0.020774	1	9856	31.04	29.07	1	75719			7170	2189	6082	6244	7170	7170		
GFGFGQGAGALVHSE	15	Unmodified	_GFGFGQGAGALVHSE_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.34404	1432.67353	1.4164	0.0010161	4.0132	0.0028789	5.4297	0.0038949	717.345854843642	12.024	0.40792	12.024	11.908	12.316	0	441	79	1.02971785871157	0.0523623291261281	1.02971785871157	416.406699090197	0	21.1747562146467						1792	47	7	NaN	NaN	NaN	5.0617E-24	1	16467	236.95	217.63	1	1448600			7171	791	6083	6245	7171	7171		
GFGFILFK	8	Unmodified	_GFGFILFK_			0	0	0	Q99729	Q99729	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.768189	927.521825	-1.5981	-0.00074276	0.63267	0.00029405	-0.96547	-0.00044872	464.768442534118	17.167	0.4079	17.167	17.096	17.504	0	750	58	0.820941264895493	0.0387745352190065	0.820941264895493	333.702869261963	0	15.7613878241687						1138	47	4	NaN	NaN	NaN	0.020376	1	2830	61.494	23.886	1	1324800			7172	2669	6084	6246	7172	7172		
GFGFITFEDEQSVDQAVNMHFHDIMGK	27	Unmodified	_GFGFITFEDEQSVDQAVNMHFHDIMGK_			0	0	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	775.604837	3098.39024	0.21169	0.00016419	-0.03261	-2.5292E-05	0.17908	0.00013889	775.855758587861	18.683	0.053198	18.683	18.656	18.71	0	522	16	0.975277694896658	0.0100996404652823	0.975277694896658	784.712554067649	0	8.12621339147563						135	7	5	NaN	NaN	NaN	0.038092	1	38358	12.066	11.552	1	28271			7173	2517	6085	6247	7173	7173		
GFGFITFEDEQSVDQAVNMHFHDIMGK	27	Unmodified	_GFGFITFEDEQSVDQAVNMHFHDIMGK_			0	0	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1033.80402	3098.39024	0.96631	0.00099897	-0.35434	-0.00036632	0.61197	0.00063265	1034.13668923635	18.683	0.035463	18.683	18.665	18.701	0	288	16	1.13199748998575	0.00999154644571898	1.13199748998575	683.108466191849	0	6.02943913551053						40	5	2	NaN	NaN	NaN	0.066736	1	38359	2.914	2.914	1	8389.5			7174	2517	6085	6247	7174	7174		
GFGFITFTNPEHASVAMR	18	Unmodified	_GFGFITFTNPEHASVAMR_			0	0	0	P98179	P98179	P98179	RBM3	RNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.324482	1980.95162	0.5144	0.00034019	-0.33864	-0.00022395	0.17576	0.00011623	661.658552245294	14.515	0.1064	14.515	14.462	14.568	0	621	64	0.908462957275599	0.0426009931647262	0.908462957275599	549.595918393683	0	25.772467413603						549	13	4	NaN	NaN	NaN	7.0533E-05	1	31300	57.042	50.187	1	124590			7175	1491	6086	6248	7175	7175		
GFGFITFTNPEHASVAMR	18	Unmodified	_GFGFITFTNPEHASVAMR_			0	0	0	P98179	P98179	P98179	RBM3	RNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.483085	1980.95162	1.5902	0.0015767	0.87902	0.00087153	2.4693	0.0024482	991.985446043599	14.515	0.1064	14.515	14.462	14.568	0	129	37	1.23753038177212	0.0238107034371058	1.23753038177212	499.117064083008	0	9.6032619225569						334	13	4	NaN	NaN	NaN	0.00032578	1	31301	37.146	32.591	1	73573			7176	1491	6086	6248	7176	7176		
GFGFVCFSSPEEATK	15	Unmodified	_GFGFVCFSSPEEATK_			0	0	0	P11940;Q9H361;Q4VXU2;Q13310	P11940;Q13310	P11940	PABPC1;PABPC3;PABPC1L;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.877056	1661.73956	2.3687	0.0019705	-0.13912	-0.00011573	2.2296	0.0018547	831.877042929845	14.143	0.23942	14.143	14.045	14.285	0	405	85	1.05384839605172	0.0562037435134362	1.05384839605172	425.602610330271	0	22.6981983739504						1480	28	5	NaN	NaN	NaN	3.4776E-17	1	23383	154.94	143.59	1	627040			7177	661;1653	6087	6249	7177	7177		
GFGFVDFNSEEDAK	14	Unmodified	_GFGFVDFNSEEDAK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.343903	1560.67325	2.1068	0.0016461	0.79686	0.00062262	2.9037	0.0022688	781.344504056762	13.637	0.32806	13.637	13.575	13.903	0	408	61	1.0518390438467	0.0401842911414492	1.0518390438467	425.018517635848	0	16.2373396890895						1593	38	6	NaN	NaN	NaN	1.7692E-11	1	20349	156.14	146.63	1	2635700			7178	764	6088	6250	7178	7178		
GFGFVLFK	8	Unmodified	_GFGFVLFK_			0	0	0	O14979;Q14103	O14979;Q14103	Q14103	HNRNPDL;HNRNPD	Heterogeneous nuclear ribonucleoprotein D-like;Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.760364	913.506175	-1.6787	-0.00076846	0.27488	0.00012583	-1.4038	-0.00064263	457.760364772553	16.298	0.54978	16.298	16.227	16.777	0	747	55	0.822982596624503	0.0367363223908843	0.822982596624503	334.607552845095	0	14.9362222070788						1246	63	4	NaN	NaN	NaN	0.028214	1	2570	33.813	22.164	1	1391100			7179	1717;134	6089	6251	7179	7179		
GFGFVSFER	9	Unmodified	_GFGFVSFER_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.258717	1044.50288	0.07501	3.9249E-05	-1.1874	-0.0006213	-1.1124	-0.00058205	523.258028037912	13.345	0.19513	13.345	13.292	13.487	0	690	58	0.86171403876517	0.038677676741416	0.86171403876517	349.703320895008	0	15.6962883189869						745	23	4	NaN	NaN	NaN	3.4551E-05	1	5331	137.88	123.35	1	481570			7180	661	6090	6252	7180	7180		
GFGFVSYEK	9	Unmodified	_GFGFVSYEK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.2531	1032.49165	0.55298	0.00028603	-2.8836	-0.0014915	-2.3306	-0.0012055	517.251342117797	9.9307	0.23938	9.9307	9.842	10.081	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	352.234642241422	0	9.08617395865309						358	28	5	NaN	NaN	NaN	0.026055	1	5050	43.734	17.511	1	302860			7181	1653	6091	6253	7181	7181		
GFGFVTFADPASVDK	15	Unmodified	_GFGFVTFADPASVDK_			0	0	0	Q96DH6	Q96DH6	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.382831	1556.75111	1.2037	0.00093817	-0.10468	-8.1588E-05	1.099	0.00085658	779.883259416141	15.828	0.15962	15.828	15.757	15.916	0	429	58	1.03776581230406	0.0382198802455282	1.03776581230406	419.341215255223	0	15.4439188871381						417	19	2	NaN	NaN	NaN	0.039335	1	20258	48.701	34.245	1	186070			7182	2505	6092	6254	7182	7182		
GFGFVTFDDHDPVDK	15	Unmodified	_GFGFVTFDDHDPVDK_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.926493	1694.75765	-0.29515	-0.00016703	0.14626	8.2775E-05	-0.14889	-8.4259E-05	565.926571939628	12.99	0.26602	12.99	12.919	13.185	0	759	157	0.814815566123307	0.106053715769954	0.814815566123307	493.519873742414	0	64.2349245556518						2399	31	6	NaN	NaN	NaN	1.9398E-06	1	24326	133.49	122.13	1	4206300			7183	808	6093	6255	7183	7183		
GFGFVTFDDHDPVDK	15	Unmodified	_GFGFVTFDDHDPVDK_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.386102	1694.75765	2.4698	0.0020953	2.1391	0.0018148	4.6089	0.0039101	848.387926054339	12.99	0.43449	12.99	12.91	13.345	0	294	97	1.12800004657306	0.0640208210659392	1.12800004657306	455.475763975411	0	25.8510028203737						2156	50	6	NaN	NaN	NaN	3.5225E-24	1	24329	228.28	208.72	1	3706200			7184	808	6093	6255	7184	7184		
GFGFVTFENIDDAK	14	Unmodified	_GFGFVTFENIDDAK_			0	0	0	Q14011	Q14011	Q14011	CIRBP	Cold-inducible RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.372463	1558.73037	1.2225	0.00095397	2.8845	0.002251	4.1069	0.0032049	780.374055233661	15.854	0.10642	15.854	15.819	15.925	0	363	37	1.08195024817156	0.0240607506716419	1.08195024817156	437.190390828927	0	9.72237772258876						252	13	3	NaN	NaN	NaN	7.4584E-05	1	20314	103.87	91.291	1	133880			7185	1714	6094	6256	7185	7185		
GFGFVTFSSMAEVDAAMAARPHSIDGR	27	Unmodified	_GFGFVTFSSMAEVDAAMAARPHSIDGR_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	707.587719	2826.32177	0.034626	2.4501E-05	-1.1933	-0.00084439	-1.1587	-0.00081989	707.837415040259	16.936	0.18623	16.936	16.892	17.078	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	780.170816513103	0	16.2672917216847						487	22	6	NaN	NaN	NaN	0.010746	1	37944	20.079	20.037	1	119820			7186	808	6095	6257	7186	7186		
GFGFVTYATVEEVDAAMNAR	20	Unmodified	_GFGFVTYATVEEVDAAMNAR_			0	0	0	P09651	P09651	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.50695	2146.99935	0.92215	0.00099086	0.20561	0.00022093	1.1278	0.0012118	1075.00885265442	19.153	0.31031	19.153	19.064	19.375	0	159	82	1.21767724410157	0.0536145394978382	1.21767724410157	490.845584865319	0	21.6120159299832						1445	36	6	NaN	NaN	NaN	2.9333E-22	1	33979	122.2	103.67	1	504710			7187	608	6096	6258	7187	7187		
GFGFVTYATVEEVDAAMNAR	20	Unmodified	_GFGFVTYATVEEVDAAMNAR_			0	0	0	P09651	P09651	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.673728	2146.99935	0.39354	0.00028204	4.1211	0.0029535	4.5147	0.0032355	716.678762370771	19.153	0.20391	19.153	19.064	19.268	0	498	112	0.991429299781895	0.0746961240555497	0.991429299781895	599.46576700819	0	45.1648638075853						1088	24	5	NaN	NaN	NaN	2.0964E-05	1	33980	123.99	118.09	1	442800			7188	608	6096	6258	7188	7188		
GFGFVTYATVEEVDAAMNAR	20	Oxidation (M)	_GFGFVTYATVEEVDAAM(Oxidation (M))NAR_	GFGFVTYATVEEVDAAM(1)NAR	GFGFVTYATVEEVDAAM(51)NAR	0	1	0	P09651	P09651	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.005366	2162.99427	0.36984	0.00026703	0.79878	0.00057672	1.1686	0.00084375	722.340912469706	16.271	0.15961	16.271	16.191	16.351	0	489	37	0.997481546940468	0.0242039733351906	0.997481546940468	603.096616819885	0	14.6341899525117						440	19	4	NaN	NaN	NaN	0.048064	1	34215	50.641	46.335	1	93894			7189	608	6096	6259	7189	7189	166	
GFGFVTYATVEEVDAAMNARPHK	23	Unmodified	_GFGFVTYATVEEVDAAMNARPHK_			0	0	1	P09651	P09651	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	628.308775	2509.20599	-0.074429	-4.6764E-05	-0.97515	-0.0006127	-1.0496	-0.00065946	628.559285017133	16.386	0.28374	16.386	16.289	16.573	0	642	61	0.894250814548268	0.0406202211384199	0.894250814548268	720.272321264029	0	32.7174663904639						1520	33	7	NaN	NaN	NaN	2.9013E-06	1	36878	73.305	69.546	1	1011400			7190	608	6097	6260	7190	7190		
GFGFVTYATVEEVDAAMNARPHK	23	Unmodified	_GFGFVTYATVEEVDAAMNARPHK_			0	0	1	P09651	P09651	P09651	HNRNPA1	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.409274	2509.20599	1.8822	0.0015762	0.51658	0.00043259	2.3988	0.0020088	837.743544759753	16.386	0.25717	16.386	16.298	16.555	0	342	109	1.09598084995137	0.0721922996706084	1.09598084995137	662.067953459938	0	43.6104409129111						1827	30	5	NaN	NaN	NaN	0.04532	1	36879	27.669	27.414	1	665900			7191	608	6097	6260	7191	7191		
GFGFVYFQNHDAADK	15	Unmodified	_GFGFVYFQNHDAADK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.5986	1714.77397	-1.1609	-0.00066472	0.21994	0.00012594	-0.94094	-0.00053878	572.598591678242	11.758	0.15963	11.758	11.704	11.864	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	502.127178724078	0	12.3568150247127						382	19	4	NaN	NaN	NaN	6.8608E-05	1	24893	72.846	68.6	1	153560			7192	1635	6098	6261	7192	7192		
GFGFVYFQNHDAADK	15	Unmodified	_GFGFVYFQNHDAADK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.394261	1714.77397	1.935	0.001661	0.4933	0.00042344	2.4283	0.0020845	858.394765894825	11.758	0.13302	11.758	11.704	11.837	0	282	34	1.13599383354359	0.0219814046771438	1.13599383354359	458.660152699999	0	8.8750432687911						409	16	5	NaN	NaN	NaN	4.3386E-06	1	24896	99.174	77.032	1	137620			7193	1635	6098	6261	7193	7193		
GFGGITHGPPEK	12	Unmodified	_GFGGITHGPPEK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.806562	1195.59857	2.0995	0.0012572	-0.10786	-6.4585E-05	1.9916	0.0011926	598.805847382512	4.5031	0.23055	4.5031	4.4499	4.6805	0	546	55	0.959108205975751	0.0364166254573408	0.959108205975751	388.587461950466	0	14.7543770047012						537	27	4	NaN	NaN	NaN	0.0061098	1	9312	73.655	65.654	1	117760			7194	1145	6099	6262	7194	7194		
GFGHIGIAVPDVYSACK	17	Unmodified	_GFGHIGIAVPDVYSACK_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.634656	1789.88214	-0.098438	-5.883E-05	-0.92997	-0.00055578	-1.0284	-0.00061461	597.634225733086	12.848	0.21283	12.848	12.751	12.963	0	744	37	0.82502364452135	0.0244908762672863	0.82502364452135	499.48751414527	0	14.8273167529439						860	25	6	NaN	NaN	NaN	0.00012834	1	26966	71.896	64.756	1	669220			7195	1545	6100	6263	7195	7195		
GFGHIGIAVPDVYSACK	17	Unmodified	_GFGHIGIAVPDVYSACK_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.634656	1789.88214	1.3383	0.00079981	0.21464	0.00012827	1.5529	0.00092809	597.634414186175	12.866	0.088692	12.866	12.813	12.901	0	588	70	0.93076847747433	0.0466259127017525	0.93076847747433	563.507763750104	0	28.2283558535067						477	11	3	NaN	NaN	NaN	0.010373	1	26969	42.061	41.098	1	105020			7196	1545	6100	6263	7196	7196		
GFGHIGIAVPDVYSACK	17	Unmodified	_GFGHIGIAVPDVYSACK_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.948346	1789.88214	3.1424	0.0028154	-0.35303	-0.00031629	2.7894	0.0024991	896.449230127789	12.857	0.23946	12.857	12.733	12.972	0	288	64	1.13199748998575	0.0419876198535674	1.13199748998575	456.892808166258	0	16.9468940636566						946	28	5	NaN	NaN	NaN	5.7054E-10	1	26972	106.47	93.884	1	431050			7197	1545	6100	6263	7197	7197		
GFGLLGSIFGK	11	Unmodified	_GFGLLGSIFGK_			0	0	0	Q8N0U8	Q8N0U8	Q8N0U8	VKORC1L1	Vitamin K epoxide reductase complex subunit 1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.313492	1094.61243	-0.5424	-0.0002974	-0.63361	-0.00034742	-1.176	-0.00064482	548.313227978061	18.763	0.15074	18.763	18.718	18.869	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	366.809104269751	0	9.05673722833359						336	18	4	NaN	NaN	NaN	5.4866E-05	1	6578	83.623	66.228	1	158270			7198	2234	6101	6264	7198	7198		
GFGTDEQAIIDCLGSR	16	Unmodified	_GFGTDEQAIIDCLGSR_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.906876	1737.7992	1.9681	0.001712	1.0583	0.00092063	3.0264	0.0026327	869.908310729011	14.684	0.10642	14.684	14.639	14.746	0	345	31	1.09397730668811	0.020036815138085	1.09397730668811	441.648951725634	0	8.0890511599784						328	13	5	NaN	NaN	NaN	1.8245E-17	1	25531	158.02	127.95	1	87977			7199	1176	6102	6265	7199	7199		
GFGTDEQAIVDVVANR	16	Unmodified	_GFGTDEQAIVDVVANR_			0	0	0	P20073	P20073	P20073	ANXA7	Annexin A7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.284681	1689.83221	-0.67102	-0.00037865	-0.51497	-0.00029059	-1.186	-0.00066923	564.2843494016	14.719	0.11534	14.719	14.675	14.79	0	681	28	0.867820189810857	0.018315911392907	0.867820189810857	525.636283993342	0	11.0938967721152						244	14	4	NaN	NaN	NaN	0.00012148	1	24207	83.214	71.196	1	69805			7200	777	6103	6266	7200	7200		
GFGYVTFSMLEDVQR	15	Unmodified	_GFGYVTFSMLEDVQR_			0	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.919255	1747.82396	1.4456	0.0012647	-2.4752	-0.0021656	-1.0297	-0.00090087	874.919721474137	17.672	0.079797	17.672	17.628	17.708	0	300	19	1.12400150285141	0.011997282593982	1.12400150285141	453.749417764035	0	4.84319636402614						92	10	3	NaN	NaN	NaN	5.534E-05	1	25829	82.437	78.701	1	18064			7201	3078	6104	6267	7201	7201		
GFHCESSAHWPIFK	14	Unmodified	_GFHCESSAHWPIFK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.264675	1701.7722	0.7825	0.00044466	2.0009	0.001137	2.7834	0.0015817	568.266136282281	9.2213	0.20399	9.2213	9.1326	9.3366	0	624	46	0.906433495720521	0.0304461528019007	0.906433495720521	548.992946652519	0	18.4400987164116						613	24	4	NaN	NaN	NaN	0.00014973	1	24546	87.942	83.414	1	129800			7202	1280	6105	6268	7202	7202		
GFHQEVFLGK	10	Unmodified	_GFHQEVFLGK_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.306198	1160.59784	1.0289	0.0005981	2.0078	0.0011671	3.0366	0.0017652	581.306649600073	7.1368	0.15075	7.1368	7.0747	7.2255	0	567	34	0.944945209309785	0.0222684693182358	0.944945209309785	382.980939964006	0	9.02528445780155						357	18	4	NaN	NaN	NaN	0.0020423	1	8358	74.424	59.661	1	99707			7203	2709	6106	6269	7203	7203		
GFHQVPFAPIVFIER	15	Unmodified	_GFHQVPFAPIVFIER_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.32263	1755.94606	-1.3518	-0.00079259	-0.77671	-0.0004554	-2.1285	-0.001248	586.656416926897	16.44	0.19512	16.44	16.36	16.555	0	735	70	0.831145085810763	0.0469245553021008	0.831145085810763	503.268240242784	0	28.4133766465417						1019	23	4	NaN	NaN	NaN	0.00060405	1	26053	48.822	47.566	1	377890			7204	1101	6107	6270	7204	7204		
GFHQVPFAPIVFIER	15	Unmodified	_GFHQVPFAPIVFIER_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.32263	1755.94606	-0.92716	-0.00054362	-1.1697	-0.0006858	-2.0968	-0.0012294	586.656212471561	16.457	0.12412	16.457	16.386	16.51	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	526.707560616134	0	12.3202146359947						302	15	3	NaN	NaN	NaN	0.020714	1	26054	23.931	23.608	1	67182			7205	1101	6107	6270	7205	7205		
GFHQVPFAPIVFIER	15	Unmodified	_GFHQVPFAPIVFIER_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.32263	1755.94606	-0.13505	-7.9183E-05	-1.9012	-0.0011147	-2.0362	-0.0011939	586.321754217571	16.44	0.14188	16.44	16.377	16.519	0	606	40	0.918606045818476	0.0263683793700451	0.918606045818476	556.226897232037	0	15.9663676380111						409	17	4	NaN	NaN	NaN	0.0031234	1	26055	47.57	44.066	1	101670			7206	1101	6107	6270	7206	7206		
GFHTEEDIGGLHATIECEQPQPDLYK	26	Unmodified	_GFHTEEDIGGLHATIECEQPQPDLYK_			0	0	0	P98196	P98196	P98196	ATP11A	Probable phospholipid-transporting ATPase IH	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	746.848727	2983.3658	0.9563	0.00071421	1.5234	0.0011378	2.4797	0.001852	747.351353412577	11.27	0.097534	11.27	11.234	11.332	0	522	25	0.975277694896658	0.0161627789282648	0.975277694896658	784.847725192066	0	13.0068803388095						199	12	4	NaN	NaN	NaN	0.00036373	1	38193	47.491	46.756	1	35495			7207	1493	6108	6271	7207	7207		
GFIGPGIDVPAPDMSTGER	19	Unmodified	_GFIGPGIDVPAPDMSTGER_			0	0	0	P00367	P00367	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.464558	1914.91456	1.9858	0.0019034	-4.7278	-0.0045314	-2.742	-0.0026281	958.961840523989	14.684	0.20397	14.684	14.568	14.772	0	270	79	1.14398322290989	0.05189537397897	1.14398322290989	461.498615362678	0	20.9353098501773						986	24	5	NaN	NaN	NaN	7.0216E-05	1	29945	79.235	4.5028	1	386910			7208	472	6109	6272	7208	7208		
GFIGPGIDVPAPDMSTGER	19	Oxidation (M)	_GFIGPGIDVPAPDM(Oxidation (M))STGER_	GFIGPGIDVPAPDM(1)STGER	GFIGPGIDVPAPDM(42)STGER	0	1	0	P00367	P00367	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.462015	1930.90948	1.9345	0.0018696	-0.61369	-0.00059311	1.3208	0.0012765	966.461517313157	13.026	0.10642	13.026	12.955	13.061	0	273	37	1.14198628764525	0.0239681717267723	1.14198628764525	460.665555502946	0	9.66851464186192						255	13	3	NaN	NaN	NaN	0.0055494	1	30322	41.87	36.171	1	54714			7209	472	6109	6273	7209	7209	70	
GFLEDLAPPER	11	Unmodified	_GFLEDLAPPER_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.319502	1242.62445	0.77076	0.00047966	1.5036	0.00093573	2.2744	0.0014154	622.319022261374	13.336	0.18625	13.336	13.212	13.398	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	384.323248228774	0	9.01578729420885						389	22	4	NaN	NaN	NaN	0.0054021	1	10702	34.953	30.046	1	88243			7210	1227	6110	6274	7210	7210		
GFLGCFPDIIGTHK	14	Unmodified	_GFLGCFPDIIGTHK_			0	0	0	Q9Y5X1	Q9Y5X1	Q9Y5X1	SNX9	Sorting nexin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.265904	1560.77588	-0.7317	-0.00038141	-1.0697	-0.00055762	-1.8014	-0.00093903	521.265521876419	15.491	0.097722	15.491	15.455	15.553	0	744	31	0.82502364452135	0.0204090624710167	0.82502364452135	500.050092431069	0	12.3700134448683						248	12	4	NaN	NaN	NaN	0.0012069	1	20363	60	52.86	1	72570			7211	3444	6111	6275	7211	7211		
GFLIDGYPR	9	Unmodified	_GFLIDGYPR_			0	0	0	P00568;Q9Y6K8	P00568	P00568	AK1;AK5	Adenylate kinase isoenzyme 1;Adenylate kinase isoenzyme 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.274367	1036.53418	0.019404	1.0076E-05	0.14828	7.6996E-05	0.16768	8.7072E-05	519.273522167068	11.66	0.20401	11.66	11.536	11.74	0	657	46	0.884090832094921	0.0304884139621503	0.884090832094921	358.820213647238	0	12.3741348903498						466	24	4	NaN	NaN	NaN	0.017035	1	5150	49.325	36.498	1	118060			7212	485	6112	6276	7212	7212		
GFLSGLLDNVK	11	Unmodified	_GFLSGLLDNVK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.826963	1161.63937	-0.36888	-0.00021462	-0.51823	-0.00030152	-0.88711	-0.00051614	581.82670892976	16.785	0.18619	16.785	16.732	16.918	0	567	37	0.944945209309785	0.0242945584092671	0.944945209309785	382.976918714827	0	9.84634350166675						511	22	4	NaN	NaN	NaN	0.00046373	1	8395	100.84	85.254	1	276420			7213	211	6113	6277	7213	7213		
GFLWDEGFHQLVVQR	15	Unmodified	_GFLWDEGFHQLVVQR_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.981044	1829.9213	-0.36221	-0.00022131	-1.3148	-0.00080332	-1.677	-0.0010246	611.314414993063	15.783	0.079843	15.783	15.748	15.828	0	678	52	0.869855008346864	0.0346063393446338	0.869855008346864	526.540916307459	0	20.9479205772466						431	10	4	NaN	NaN	NaN	2.8142E-05	1	27968	77.358	73.622	1	129720			7214	1701	6114	6278	7214	7214		
GFLWDEGFHQLVVQR	15	Unmodified	_GFLWDEGFHQLVVQR_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.967928	1829.9213	1.5803	0.0014475	4.5556	0.0041728	6.136	0.0056203	916.472238159352	15.792	0.11527	15.792	15.757	15.872	-1.7764E-15	219	52	1.17788915118882	0.0338826381557076	1.17788915118882	475.335441961125	0	13.6732890071168						324	14	3	NaN	NaN	NaN	0.0044466	1	27972	43.306	38.489	1	69636			7215	1701	6114	6278	7215	7215		
GFNLNPLNQDELK	13	Unmodified	_GFNLNPLNQDELK_			0	0	0	Q9NUG6	Q9NUG6	Q9NUG6	PDRG1	p53 and DNA damage-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.385905	1500.75726	1.5152	0.0011385	0.68659	0.00051589	2.2018	0.0016544	751.386145616452	13.478	0.12412	13.478	13.425	13.549	0	411	46	1.04982941439551	0.03014029110692	1.04982941439551	424.35538446333	0	12.1831172237428						262	15	2	NaN	NaN	NaN	0.0051409	1	18548	61.577	38.524	1	75155			7216	3049	6115	6279	7216	7216		
GFPTDATLDDIK	12	Unmodified	_GFPTDATLDDIK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.822075	1291.6296	1.1087	0.00071715	3.7094	0.0023993	4.8181	0.0031165	646.823371524962	11.553	0.35483	11.553	11.314	11.669	0	516	58	0.979317271586824	0.0383574228971185	0.979317271586824	396.438502673575	0	15.5275105840944						559	41	3	NaN	NaN	NaN	0.0097241	1	12125	35.33	29.464	1	197340			7217	533	6116	6280	7217	7217		
GFPTIYFSPANK	12	Unmodified	_GFPTIYFSPANK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.34552	1340.67649	1.5624	0.0010489	-1.1218	-0.00075315	0.44059	0.00029579	671.344923273432	13.611	0.39901	13.611	13.469	13.868	0	534	70	0.967195187796614	0.0464712296387221	0.967195187796614	391.379767171754	0	18.8047865267221						1389	46	5	NaN	NaN	NaN	5.0432E-05	1	13617	107.08	97.564	1	1132100			7218	904	6117	6281	7218	7218		
GFQEVVTPNIFNSR	14	Unmodified	_GFQEVVTPNIFNSR_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.412454	1606.81036	2.1639	0.0017406	-2.6065	-0.0020967	-0.44268	-0.0003561	804.41041375372	14.249	0.26599	14.249	14.152	14.418	1.7764E-15	375	136	1.07392668217569	0.0902217993517123	1.07392668217569	433.833931112818	0	36.4468809039442						1103	31	4	NaN	NaN	NaN	0.00018279	1	21823	108.2	91.204	1	322190			7219	857	6118	6282	7219	7219		
GFQFVSSSLPDICYR	15	Unmodified	_GFQFVSSSLPDICYR_			0	0	0	P62633	P62633	P62633	CNBP	Cellular nucleic acid-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.424704	1774.83486	1.6079	0.0014285	-0.32627	-0.00028986	1.2816	0.0011386	888.926098796851	15.668	0.18615	15.668	15.633	15.819	0	297	37	1.12600091227925	0.0239780653182871	1.12600091227925	454.502110799603	0	9.67857235390005						381	22	7	NaN	NaN	NaN	4.462E-06	1	26536	104.49	86.76	1	160510			7220	1393	6119	6283	7220	7220		
GFQQILAGEYDHLPEQAFYMVGPIEEAVAK	30	Unmodified	_GFQQILAGEYDHLPEQAFYMVGPIEEAVAK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1117.55158	3349.63291	1.8621	0.0020809	0.66649	0.00074484	2.5285	0.0028258	1118.22060283907	20.004	0.079824	20.004	19.96	20.04	0	285	97	1.13399579921816	0.0639679733859324	1.13399579921816	684.084786743764	0	38.58878265891						731	10	7	NaN	NaN	NaN	1.1813E-21	1	38580	120.49	119.27	1	233800			7221	541	6120	6284	7221	7221		
GFSEEHNTWEPEK	13	Unmodified	_GFSEEHNTWEPEK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.346977	1588.6794	3.0475	0.0024239	0.23844	0.00018964	3.286	0.0026135	795.848731947357	5.6647	0.23059	5.6647	5.5849	5.8155	0	405	49	1.05384839605172	0.0321429928417942	1.05384839605172	425.764421008499	0	12.9860640183535						708	27	5	NaN	NaN	NaN	0.0029265	1	21227	66.953	65.99	1	261280			7222	1071	6121	6285	7222	7222		
GFSEGLWEIENNPTVK	16	Unmodified	_GFSEGLWEIENNPTVK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.300219	1818.87883	-0.16449	-9.9892E-05	-0.47133	-0.00028624	-0.63581	-0.00038613	607.634285293062	14.338	0.15959	14.338	14.302	14.462	0	669	70	0.875957769340875	0.0467878635892381	0.875957769340875	530.259226211821	0	28.3229365744447						500	19	4	NaN	NaN	NaN	0.00087341	1	27689	61.194	52.82	1	119060			7223	1201	6122	6286	7223	7223		
GFSEGLWEIENNPTVK	16	Unmodified	_GFSEGLWEIENNPTVK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.446691	1818.87883	2.2943	0.0020888	0.58438	0.00053205	2.8787	0.0026209	910.447420592109	14.338	0.24825	14.338	14.232	14.48	0	303	163	1.12200181823275	0.10776816603689	1.12200181823275	452.802881526716	0	43.4916729415057						1598	29	5	NaN	NaN	NaN	1.1994E-24	1	27691	193.34	181.32	1	1015900			7224	1201	6122	6286	7224	7224		
GFSFVATGLMEDDGKPR	17	Unmodified	_GFSFVATGLMEDDGKPR_			0	0	1	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.940718	1825.86688	1.1097	0.0010142	2.038	0.0018626	3.1477	0.0028768	914.445655138457	13.159	0.06207	13.159	13.132	13.194	-1.7764E-15	171	25	1.20972836110953	0.015904312506078	1.20972836110953	488.19227219847	0	6.41826934848041						112	8	3	NaN	NaN	NaN	3.7558E-05	1	27872	79.795	77.811	1	22300			7225	1845	6123	6287	7225	7225		
GFSLEELR	8	Unmodified	_GFSLEELR_			0	0	0	P26373	P26373	P26373	RPL13	60S ribosomal protein L13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.750724	949.486896	-0.5354	-0.00025472	-0.67254	-0.00031996	-1.2079	-0.00057468	475.750364540121	11.447	0.26615	11.447	11.323	11.589	0	717	73	0.84338031290707	0.0489613528104642	0.84338031290707	342.708299782423	0	19.8954869113365						562	31	3	NaN	NaN	NaN	0.0036637	1	3239	60.709	37.399	1	178180			7226	851	6124	6288	7226	7226		
GFSLLATEDK	10	Unmodified	_GFSLLATEDK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.782222	1079.54989	0.67824	0.00036678	1.4119	0.0007635	2.0901	0.0011303	540.782688198043	10.569	0.19508	10.569	10.489	10.684	0	624	46	0.906433495720521	0.0304545980014471	0.906433495720521	367.696079653081	0	12.3539524360156						248	23	3	NaN	NaN	NaN	5.3796E-05	1	6199	76.605	62.957	1	59914			7227	611	6125	6289	7227	7227		
GFSLSDVPQAEISGEHLR	18	Unmodified	_GFSLSDVPQAEISGEHLR_			0	0	0	P35052	P35052	P35052	GPC1	Glypican-1;Secreted glypican-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.993678	1940.9592	0.52413	0.00033964	0.49402	0.00032012	1.0182	0.00065976	648.328192698543	12.502	0.10641	12.502	12.467	12.573	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	560.7184793417	0	9.81064244821869						192	13	4	NaN	NaN	NaN	0.012123	1	30530	31.722	30.841	1	38167			7228	958	6126	6290	7228	7228		
GFSVVADTPELQR	13	Unmodified	_GFSVVADTPELQR_			0	0	0	Q14847	Q14847	Q14847	LASP1	LIM and SH3 domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.867348	1417.72014	2.2318	0.0015842	-1.1568	-0.00082121	1.0749	0.00076304	709.866382287397	10.959	0.30151	10.959	10.835	11.137	0	468	88	1.01159370163332	0.0584001146136149	1.01159370163332	409.118764307101	0	23.6187539399841						686	35	2	NaN	NaN	NaN	2.109E-11	1	16016	152.17	131.02	1	327480			7229	1777	6127	6291	7229	7229		
GFTAAGVLAAHK	12	Unmodified	_GFTAAGVLAAHK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.819473	1141.62439	1.8111	0.0010356	0.6226	0.00035601	2.4337	0.0013916	571.819730895968	7.3762	0.14185	7.3762	7.3319	7.4738	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	396.98920707472	0	8.18655393422137						287	17	4	NaN	NaN	NaN	0.00041222	1	7841	88.181	72.599	1	106020			7230	938	6128	6292	7230	7230		
GFTDADNTWEPEENLDCPELIEAFLNSQK	29	Unmodified	_GFTDADNTWEPEENLDCPELIEAFLNSQK_			0	0	0	Q13185	Q13185	Q13185	CBX3	Chromobox protein homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1128.17339	3381.49833	0.55317	0.00062407	0.6505	0.00073388	1.2037	0.001358	1128.50867771249	19.995	0.026587	19.995	19.995	20.022	0	90	82	1.26329880838669	0.0535410826740943	1.26329880838669	762.057306502748	0	32.2974841573443						205	4	6	NaN	NaN	NaN	0.051153	1	38599	8.9866	8.9866	1	35670			7231	1639	6129	6293	7231	7231		
GFTGIDSDYEKPETPER	17	Unmodified	_GFTGIDSDYEKPETPER_			0	0	1	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.633927	1939.87995	0.85783	0.00055556	0.72521	0.00046967	1.583	0.0010252	647.968430607846	7.6245	0.088682	7.6245	7.5801	7.6688	0	639	40	0.896281965493857	0.0263976438859336	0.896281965493857	542.306528873587	0	15.9722221101857						271	11	3	NaN	NaN	NaN	0.0021005	1	30500	58.338	58.169	1	67601			7232	422	6130	6294	7232	7232		
GFTGIDSEYEKPEAPELVLK	20	Unmodified	_GFTGIDSEYEKPEAPELVLK_			0	0	1	O43252	O43252	O43252	PAPSS1	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 1;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.379087	2221.11543	2.0537	0.0015225	-1.7907	-0.0013276	0.26293	0.00019493	741.712349116463	12.91	0.10642	12.91	12.875	12.981	0	504	91	0.987393073566096	0.0604932633286852	0.987393073566096	596.897337125987	0	36.56929419663						638	13	4	NaN	NaN	NaN	2.804E-05	1	34902	42.495	40.393	1	158990			7233	192	6131	6295	7233	7233		
GFTIPEAFR	9	Unmodified	_GFTIPEAFR_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.274367	1036.53418	-0.292	-0.00015163	-0.8235	-0.00042762	-1.1155	-0.00057925	519.273938295	13.221	0.20397	13.221	13.141	13.345	0	732	82	0.833184998970724	0.0550241487779554	0.833184998970724	338.15939754207	0	22.332294777276						804	24	4	NaN	NaN	NaN	0.0098907	1	5149	47.349	24.963	1	285150			7234	71	6132	6296	7234	7234		
GFTLGVEDILVK	12	Unmodified	_GFTLGVEDILVK_			0	0	0	O95602	O95602	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.868828	1289.7231	0.37723	0.00024364	-0.23518	-0.0001519	0.14205	9.1743E-05	645.868750161527	16.644	0.097521	16.644	16.59	16.688	0	528	37	0.971237000454584	0.0242441707123356	0.971237000454584	393.173685334691	0	9.8144633517781						186	12	3	NaN	NaN	NaN	0.022802	1	12066	35.33	27.147	1	40875			7235	444	6133	6297	7235	7235		
GFTLNDAANSR	11	Unmodified	_GFTLNDAANSR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.283451	1164.55235	1.2445	0.0007259	1.0898	0.00063563	2.3343	0.0013615	583.284886905582	6.7909	0.16845	6.7909	6.6845	6.853	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	373.112795471254	0	9.86107023477757						297	20	3	NaN	NaN	NaN	0.0037556	1	8454	65.404	45.17	1	120440			7236	1055	6134	6298	7236	7236		
GFTPIPGTIEMLHPWNNEGAPPEDK	25	Unmodified	_GFTPIPGTIEMLHPWNNEGAPPEDK_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	916.442644	2746.3061	0.76257	0.00069885	-1.4638	-0.0013415	-0.7012	-0.00064261	916.775826419992	16.014	0.15074	16.014	15.961	16.111	0	486	43	0.999498404980629	0.0282457786988155	0.999498404980629	603.496976015038	0	17.0547966309716						468	18	5	NaN	NaN	NaN	0.014803	1	37747	27.236	26.064	1	74567			7237	1722	6135	6299	7237	7237		
GFVEDLDESFK	11	Unmodified	_GFVEDLDESFK_			0	0	0	Q96JJ7	Q96JJ7	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.300975	1284.5874	1.1415	0.00073432	1.234	0.00079384	2.3755	0.0015282	643.301825917279	13.948	0.079793	13.948	13.912	13.992	0	528	40	0.971237000454584	0.0262699700789047	0.971237000454584	393.190335346941	0	10.6349926331515						225	10	3	NaN	NaN	NaN	0.0040343	1	11889	46.033	35.331	1	66032			7238	2569	6136	6300	7238	7238		
GFVEPDHYVVVGAQR	15	Unmodified	_GFVEPDHYVVVGAQR_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.925729	1671.8369	2.1026	0.0017597	-2.5814	-0.0021604	-0.47884	-0.00040076	836.925169812691	9.3721	0.27483	9.3721	9.2303	9.5051	0	369	70	1.07793901817685	0.0461259947447743	1.07793901817685	435.310009648253	0	18.6273127503477						924	32	4	NaN	NaN	NaN	0.002337	1	23664	69.276	23.336	1	365160			7239	495	6137	6301	7239	7239		
GFVEPDHYVVVGAQR	15	Unmodified	_GFVEPDHYVVVGAQR_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.286245	1671.8369	-0.41891	-0.00023387	0.1979	0.00011049	-0.22101	-0.00012339	558.286348960086	9.381	0.23058	9.381	9.2923	9.5228	0	705	61	0.851531465363931	0.0407727738696773	0.851531465363931	515.815348879464	0	24.6981156114797						890	27	5	NaN	NaN	NaN	2.7064E-06	1	23665	129.69	114.16	1	367460			7240	495	6137	6301	7240	7240		
GFVFITFK	8	Unmodified	_GFVFITFK_			0	0	0	Q99729	Q99729	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.773471	957.53239	-1.3592	-0.00065213	-0.46495	-0.00022307	-1.8242	-0.0008752	479.773359894122	15.659	0.266	15.659	15.597	15.863	0	747	46	0.822982596624503	0.0306157267397379	0.822982596624503	334.379571005188	0	12.4392345782697						799	31	4	NaN	NaN	NaN	0.0032571	1	3392	70.67	57.842	1	615990			7241	2669	6138	6302	7241	7241		
GFVHPDPLWIPFK	13	Unmodified	_GFVHPDPLWIPFK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.281883	1551.82382	-1.5676	-0.00081243	-0.16394	-8.4965E-05	-1.7315	-0.0008974	518.281965028929	15.819	0.14189	15.819	15.775	15.916	0	771	34	0.806643990516186	0.0224796529754165	0.806643990516186	488.934876000325	0	13.6256966757196						379	17	4	NaN	NaN	NaN	0.005717	1	20124	51.872	43.498	1	131160			7242	1794	6139	6303	7242	7242		
GFVHPDPLWIPFK	13	Unmodified	_GFVHPDPLWIPFK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.281883	1551.82382	-0.74038	-0.00038373	-0.40397	-0.00020937	-1.1444	-0.0005931	518.281725311345	15.828	0.070918	15.828	15.792	15.863	0	699	19	0.85560534332665	0.0122216343597983	0.85560534332665	518.612049741423	0	7.40795612832608						95	9	3	NaN	NaN	NaN	0.043307	1	20125	16.652	15.395	1	17390			7243	1794	6139	6303	7243	7243		
GFVHPDPLWIPFK	13	Unmodified	_GFVHPDPLWIPFK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.919187	1551.82382	1.5139	0.0011762	2.0834	0.0016186	3.5973	0.0027948	777.422563490461	15.819	0.13303	15.819	15.748	15.881	-1.7764E-15	315	31	1.11400032671325	0.0200119941897818	1.11400032671325	450.158708266794	0	8.0866883413704						331	16	4	NaN	NaN	NaN	4.3175E-05	1	20126	78.932	70.458	1	95180			7244	1794	6139	6303	7244	7244		
GFVPNMQVEGVFYVNDALEK	20	Unmodified	_GFVPNMQVEGVFYVNDALEK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1128.5539	2255.09326	0.66781	0.00075366	-0.50137	-0.00056582	0.16644	0.00018784	1129.05464169638	17.885	0.14184	17.885	17.832	17.974	0	105	28	1.25339330680955	0.0178372338403638	1.25339330680955	505.087028952591	0	7.18797156185144						269	17	3	NaN	NaN	NaN	1.7103E-08	1	35238	70.552	58.634	1	52557			7245	3395	6140	6304	7245	7245		
GFVPSPTSQPGGHESLVDR	19	Unmodified	_GFVPSPTSQPGGHESLVDR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.325428	1965.95445	0.47798	0.00031371	0.09693	6.3618E-05	0.57491	0.00037733	656.659810389346	8.2721	0.19519	8.2721	8.2011	8.3963	0	699	79	0.85560534332665	0.0529383935071229	0.85560534332665	517.645912629254	0	32.028017629688						1022	23	5	NaN	NaN	NaN	4.1978E-05	1	31034	100.69	90.671	1	351290			7246	858	6141	6305	7246	7246		
GFVPSPTSQPGGHESLVDR	19	Unmodified	_GFVPSPTSQPGGHESLVDR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.984503	1965.95445	2.3863	0.0023481	-1.1441	-0.0011258	1.2422	0.0012223	984.485058463252	8.2721	0.11532	8.2721	8.2277	8.343	0	234	73	1.16792504164217	0.0478968302573193	1.16792504164217	471.069054155374	0	19.3186323795502						467	14	3	NaN	NaN	NaN	0.038579	1	31035	46.768	42.461	1	89214			7247	858	6141	6305	7247	7247		
GFVVINQK	8	Unmodified	_GFVVINQK_			0	0	0	P40227;Q92526	P40227;Q92526	P40227	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.766178	903.517802	-0.52876	-0.0002394	1.932	0.00087475	1.4032	0.00063534	452.7657758562	6.8619	0.14184	6.8619	6.7998	6.9417	0	765	37	0.810730346695089	0.0245113207191667	0.810730346695089	329.680005760957	0	9.96742306346994						312	17	3	NaN	NaN	NaN	0.0034268	1	2395	64.547	38.068	1	109300			7248	1016;2407	6142	6306	7248	7248		
GFYEGIMLVDGFK	13	Unmodified	_GFYEGIMLVDGFK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.365595	1474.71664	0.75475	0.00055728	1.8538	0.0013688	2.6086	0.0019261	738.366342347547	17.486	0.12414	17.486	17.424	17.548	0	390	55	1.06389100039157	0.0361608698716229	1.06389100039157	430.108646442666	0	14.6190754400111						378	15	4	NaN	NaN	NaN	0.00021969	1	17732	71.066	63.915	1	99224			7249	3161	6143	6307	7249	7249		
GFYLFVEGGR	10	Unmodified	_GFYLFVEGGR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.792924	1143.57129	0.54328	0.00031118	0.78199	0.00044792	1.3253	0.0007591	572.792612853491	14.223	0.18619	14.223	14.187	14.373	0	606	34	0.918606045818476	0.0223117043347298	0.918606045818476	372.37092260837	0	9.04438846871068						280	22	4	NaN	NaN	NaN	0.0090446	1	7885	42.075	36.327	1	62593			7250	613	6144	6308	7250	7250		
GGAAVDPDSGLEHSAHVLEK	20	Unmodified	_GGAAVDPDSGLEHSAHVLEK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	497.99726	1987.95993	-0.35579	-0.00017718	-0.12558	-6.2538E-05	-0.48137	-0.00023972	498.248008618277	7.3496	0.2128	7.3496	7.2875	7.5003	8.8818E-16	765	37	0.810730346695089	0.0245113207191667	0.810730346695089	653.942065105171	0	19.7710419437099						576	25	5	NaN	NaN	NaN	6.2857E-08	1	31415	88.796	83.979	1	303040			7251	611	6145	6309	7251	7251		
GGAAVDPDSGLEHSAHVLEK	20	Unmodified	_GGAAVDPDSGLEHSAHVLEK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.987243	1987.95993	1.7541	0.0017453	-1.1389	-0.0011332	0.61527	0.00061219	995.487406186778	7.3585	0.088659	7.3585	7.3142	7.4028	0	75	79	1.27319752866042	0.0514910115870786	1.27319752866042	513.489642361894	0	20.7666921506828						459	11	3	NaN	NaN	NaN	1.6672E-07	1	31417	81.578	71.999	1	88212			7252	611	6145	6309	7252	7252		
GGAAVDPDSGLEHSAHVLEK	20	Unmodified	_GGAAVDPDSGLEHSAHVLEK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.660587	1987.95993	1.6891	0.001121	0.44415	0.00029476	2.1332	0.0014157	663.995169412342	7.3496	0.19508	7.3496	7.2875	7.4826	0	597	82	0.924688525662974	0.0547120326141308	0.924688525662974	559.398243891583	0	33.0985127582721						933	23	5	NaN	NaN	NaN	1.7674E-07	1	31419	114.5	104.02	1	408310			7253	611	6145	6309	7253	7253		
GGADVSGGVSAPDISLGEGHLSVK	24	Unmodified	_GGADVSGGVSAPDISLGEGHLSVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.041356	2208.10224	0.78449	0.0005782	0.41082	0.00030279	1.1953	0.000881	737.37552056363	11.695	0.12412	11.695	11.642	11.766	0	471	70	1.00957851518677	0.0463237128819054	1.00957851518677	610.331176026994	0	28.0045640193913						460	15	4	NaN	NaN	NaN	0.0021397	1	34765	64.21	58.307	1	145940			7254	1584	6146	6310	7254	7254		
GGAEGELQALR	11	Unmodified	_GGAEGELQALR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.78837	1099.56219	0.65038	0.00035822	2.4766	0.0013641	3.127	0.0017223	550.78853281071	7.1457	0.21281	7.1457	7.0836	7.2964	0	648	58	0.890187667287968	0.0385865321490887	0.890187667287968	361.023109025193	0	15.6490932360425						381	25	2	NaN	NaN	NaN	0.0045634	1	6702	74.269	55.013	1	176000			7255	1816	6147	6311	7255	7255		
GGAEQFMEETER	12	Unmodified	_GGAEQFMEETER_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.295898	1382.57724	2.3515	0.0016279	0.50099	0.00034683	2.8525	0.0019748	692.296773242652	7.66	0.29271	7.66	7.6068	7.8995	8.8818E-16	552	52	0.955063035883597	0.034395858934352	0.955063035883597	386.350902810867	0	13.9141299086585						915	34	5	NaN	NaN	NaN	3.8449E-08	1	14894	147.19	124.13	1	747280			7256	2679	6148	6312	7256	7256		
GGAEQFMEETER	12	Oxidation (M)	_GGAEQFM(Oxidation (M))EETER_	GGAEQFM(1)EETER	GGAEQFM(69)EETER	0	1	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.293356	1398.57216	1.9337	0.0013542	-0.053483	-3.7454E-05	1.8803	0.0013167	700.293436650601	4.6361	0.14186	4.6361	4.5652	4.7071	0	549	55	0.957085760909907	0.0363863959780442	0.957085760909907	387.125312095138	0	14.7176935174816						419	17	3	NaN	NaN	NaN	0.0020734	1	15390	69.276	23.243	1	89759			7257	2679	6148	6313	7257	7257	619	
GGAEVQIFAPDVPQMHVIDHTK	22	Unmodified	_GGAEVQIFAPDVPQMHVIDHTK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.070481	2388.18962	1.9633	0.0015649	-0.7638	-0.00060881	1.1995	0.00095608	797.404260594054	12.866	0.15961	12.866	12.795	12.955	0	528	49	0.971237000454584	0.0323166232596742	0.971237000454584	586.875501573115	0	19.527504075518						624	19	5	NaN	NaN	NaN	4.1479E-06	1	36289	85.742	61.963	1	129920			7258	0	6149	6314	7258	7258		
GGDFLYSDREIEVMK	15	Unmodified	_GGDFLYSDREIEVMK_			0	0	1	Q9NTM9	Q9NTM9	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.950422	1757.82944	-0.28356	-0.00016643	0.83242	0.00048859	0.54886	0.00032216	586.951164533981	11.376	0.079812	11.376	11.35	11.429	0	711	28	0.847456455381371	0.0183388204791043	0.847456455381371	513.140660143761	0	11.1042808006821						176	10	3	NaN	NaN	NaN	0.0062779	1	26087	25.588	19.56	1	35337			7259	3045	6150	6315	7259	7259		
GGDIFLDQLAR	11	Unmodified	_GGDIFLDQLAR_			0	0	0	Q9ULT8	Q9ULT8	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.81967	1203.62479	0.14622	8.8141E-05	-2.6176	-0.001578	-2.4714	-0.0014898	603.318971562849	13.779	0.10637	13.779	13.735	13.841	0	618	46	0.910492137470517	0.0304334915876326	0.910492137470517	368.862364115838	0	12.3293427733495						224	13	2	NaN	NaN	NaN	0.030914	1	9574	32.14	16.559	1	74432			7260	3279	6151	6316	7260	7260		
GGDIMLWNFGIK	12	Unmodified	_GGDIMLWNFGIK_			0	0	0	Q92466	Q92466	Q92466	DDB2	DNA damage-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.847373	1349.68019	0.39583	0.00026752	-1.4239	-0.00096235	-1.0281	-0.00069483	675.846510345834	17.708	0.07981	17.708	17.672	17.752	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	389.717248998863	0	7.36298221934186						128	10	2	NaN	NaN	NaN	0.056307	1	13879	11.957	6.8066	1	30868			7261	2403	6152	6317	7261	7261		
GGDISVCEWYQR	12	Unmodified	_GGDISVCEWYQR_			0	0	0	P14854	P14854	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.327533	1468.64051	1.597	0.0011743	1.2708	0.00093449	2.8679	0.0021088	735.328234670383	10.605	0.27489	10.605	10.516	10.791	0	462	55	1.01562323939346	0.0362708643126453	1.01562323939346	410.610803444335	0	14.6641078693021						690	32	5	NaN	NaN	NaN	2.7515E-05	1	17531	117.3	111.43	1	276410			7262	703	6153	6318	7262	7262		
GGDLMAYDR	9	Unmodified	_GGDLMAYDR_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.224017	996.43348	0.37261	0.00018601	0.28507	0.00014231	0.65768	0.00032833	499.22424199243	6.117	0.23947	6.117	6.0727	6.3121	0	720	43	0.841341816837976	0.028536968892656	0.841341816837976	341.650006062387	0	11.588221814316						646	28	5	NaN	NaN	NaN	0.00099037	1	4193	83.623	60.048	1	308010			7263	1360	6154	6319	7263	7263		
GGDLMLVHYEGYLEK	15	Unmodified	_GGDLMLVHYEGYLEK_			0	0	0	Q9NWM8	Q9NWM8	Q9NWM8	FKBP14	Peptidyl-prolyl cis-trans isomerase FKBP14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.42163	1722.82871	1.6663	0.0014371	-0.0015909	-1.3721E-06	1.6647	0.0014357	862.923191105073	13.043	0.1064	13.043	12.999	13.105	0	228	31	1.17191150690002	0.0199295899458025	1.17191150690002	473.144260548186	0	8.04631667358456						280	13	4	NaN	NaN	NaN	4.2035E-05	1	25126	72.846	66.099	1	68222			7264	3081	6155	6320	7264	7264		
GGDPFWDGPGDPMR	14	Unmodified	_GGDPFWDGPGDPMR_			0	0	0	Q96QC0	Q96QC0	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.319708	1502.62486	1.2384	0.0009317	0.26359	0.00019831	1.502	0.00113	752.320031751253	12.866	0.070949	12.866	12.822	12.893	0	510	19	0.983355730988811	0.0121137032584996	0.983355730988811	397.481301104948	0	4.89646867420601						66	9	2	NaN	NaN	NaN	0.0070332	1	18583	31.04	29.891	1	10433			7265	2603	6156	6321	7265	7265		
GGDSIGETPTPGASK	15	Unmodified	_GGDSIGETPTPGASK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.330795	1372.64704	2.5083	0.001724	-2.5103	-0.0017254	-0.0019586	-1.3462E-06	687.329180777586	4.2549	0.20396	4.2549	4.1928	4.3968	0	528	43	0.971237000454584	0.0282887809416775	0.971237000454584	392.92189668695	0	11.4444584147465						441	24	4	NaN	NaN	NaN	0.0087551	1	14563	52.837	41.482	1	171340			7266	343	6157	6322	7266	7266		
GGEADNLDEFLK	12	Unmodified	_GGEADNLDEFLK_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.309332	1306.60411	0.77628	0.00050793	2.0304	0.0013285	2.8066	0.0018364	654.310096890051	12.485	0.10639	12.485	12.449	12.556	0	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	389.84744639682	0	8.18325843023899						172	13	3	NaN	NaN	NaN	0.0021973	1	12544	54.584	43.796	1	58239			7267	246	6158	6323	7267	7267		
GGEDGPAIAIDLSGINETNDLK	22	Unmodified	_GGEDGPAIAIDLSGINETNDLK_			0	0	0	Q14651	Q14651	Q14651	PLS1	Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1100.04241	2198.07027	0.82014	0.00090219	0.29836	0.00032821	1.1185	0.0012304	1100.54429892127	15.491	0.044331	15.491	15.482	15.526	0	108	34	1.25141139212444	0.0217950915372862	1.25141139212444	504.368472069985	0	8.78428715486189						73	6	2	NaN	NaN	NaN	0.053116	1	34655	18.396	16.548	1	14671			7268	1760	6159	6324	7268	7268		
GGEHGPQVPLSQPPEDELDR	20	Unmodified	_GGEHGPQVPLSQPPEDELDR_			0	0	0	Q15654	Q15654	Q15654	TRIP6	Thyroid receptor-interacting protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.678418	2156.01342	0.54518	0.00039236	0.57047	0.00041055	1.1156	0.00080291	720.013007591096	8.7866	0.17744	8.7866	8.7068	8.8842	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	535.778384657472	0	13.5184590961218						461	21	4	NaN	NaN	NaN	0.000283	1	34121	47.27	39.694	1	98562			7269	1862	6160	6325	7269	7269		
GGEIQPVSVK	10	Unmodified	_GGEIQPVSVK_			0	0	0	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.284931	1012.55531	1.713	0.00086897	0.47264	0.00023976	2.1856	0.0011087	507.285400836616	5.0351	0.39008	5.0351	4.9465	5.3366	0	675	55	0.871889544407995	0.0366242054920374	0.871889544407995	353.977971809759	0	14.8690416835057						1139	45	4	NaN	NaN	NaN	0.0010661	1	4573	90.263	75.727	1	1383000			7270	1347	6161	6326	7270	7270		
GGELLVHTGFLGSSQDR	17	Unmodified	_GGELLVHTGFLGSSQDR_			0	0	0	Q6RW13	Q6RW13	Q6RW13	AGTRAP	Type-1 angiotensin II receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.635714	1771.88531	0.69365	0.00041039	0.37847	0.00022392	1.0721	0.00063431	591.970362874346	10.738	0.097564	10.738	10.693	10.791	0	624	43	0.906433495720521	0.028418378530508	0.906433495720521	548.817628339329	0	17.2064549467748						327	12	4	NaN	NaN	NaN	8.587E-11	1	26468	113.34	104.08	1	81096			7271	2082	6162	6327	7271	7271		
GGELVYTDSEAR	12	Unmodified	_GGELVYTDSEAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.806956	1295.59936	2.4868	0.0016135	-0.063503	-4.1201E-05	2.4233	0.0015723	648.80655988034	5.6471	0.20399	5.6471	5.6026	5.8066	0	510	40	0.983355730988811	0.026248176167575	0.983355730988811	398.060425358	0	10.6252090071518						452	24	4	NaN	NaN	NaN	0.00068086	1	12225	87.895	63.774	1	220010			7272	1816	6163	6328	7272	7272		
GGETVMVNAAAGAVGSVVGQIAK	23	Unmodified	_GGETVMVNAAAGAVGSVVGQIAK_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.036889	2085.08884	0.79159	0.00055097	0.057196	3.9811E-05	0.84878	0.00059078	696.371563786509	18.515	0.13305	18.515	18.47	18.603	0	444	37	1.02770517576159	0.0241538670444676	1.02770517576159	621.51839089097	0	14.607372749823						421	16	5	NaN	NaN	NaN	9.5947E-05	1	33106	125.14	122.42	1	141560			7273	1778	6164	6329	7273	7273		
GGFCNFMHLK	10	Unmodified	_GGFCNFMHLK_			0	0	0	Q01081	Q01081	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.188049	1209.54232	-1.9252	-0.00077813	-1.4558	-0.00058843	-3.381	-0.0013666	404.187634939211	10.197	0.097535	10.197	10.152	10.25	0	873	25	0.737001551771189	0.016425306665147	0.737001551771189	447.836657276616	0	9.9807855410682						183	12	3	NaN	NaN	NaN	0.020041	1	9709	27.736	23.197	1	43326			7274	1510	6165	6330	7274	7274		
GGFDGEYQDDSLDLLR	16	Unmodified	_GGFDGEYQDDSLDLLR_			0	0	0	Q5F1R6	Q5F1R6	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.407763	1798.80097	1.8186	0.0016375	6.2875	0.0056613	8.106	0.0072987	900.414675208175	14.595	0.15958	14.595	14.515	14.675	0	294	46	1.12800004657306	0.0299952772344867	1.12800004657306	455.261996635042	0	12.1061252123889						333	19	4	NaN	NaN	NaN	1.1281E-06	1	27181	75.012	69.314	1	97491			7275	1961	6166	6331	7275	7275		
GGFDWNLVFK	10	Unmodified	_GGFDWNLVFK_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.800749	1181.58694	-0.28397	-0.00016805	-0.082546	-4.8851E-05	-0.36652	-0.0002169	591.800896782379	17.362	0.23941	17.362	17.291	17.53	0	624	40	0.906433495720521	0.026386663985959	0.906433495720521	367.295721681469	0	10.6921344337406						631	28	4	NaN	NaN	NaN	3.5816E-07	1	8915	133.98	104.88	1	463490			7276	1586	6167	6332	7276	7276		
GGGDVLEPVSSDSLSTK	17	Unmodified	_GGGDVLEPVSSDSLSTK_			0	0	0	Q5JSH3	Q5JSH3	Q5JSH3	WDR44	WD repeat-containing protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.407231	1646.79991	1.7013	0.0014025	-1.8809	-0.0015507	-0.17967	-0.00014812	824.409086655702	9.4164	0.22174	9.4164	9.3011	9.5228	0	369	31	1.07793901817685	0.0200589169906749	1.07793901817685	435.364406460233	0	8.10151441094553						466	26	5	NaN	NaN	NaN	0.0028223	1	22942	46.068	40.917	1	112300			7277	1967	6168	6333	7277	7277		
GGGELGLQWHADGR	14	Unmodified	_GGGELGLQWHADGR_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.904135	1451.69057	-1.4448	-0.0007006	0.24732	0.00011993	-1.1975	-0.00058067	484.904189933079	8.2454	0.070987	8.2454	8.21	8.281	0	783	28	0.798467866007927	0.0184026828244152	0.798467866007927	484.273747841705	0	11.1612959783571						153	9	4	NaN	NaN	NaN	0.0017235	1	17024	54.27	52.471	1	32884			7278	1942	6169	6334	7278	7278		
GGGELGLQWHADGR	14	Unmodified	_GGGELGLQWHADGR_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.852564	1451.69057	1.7724	0.0012883	0.43513	0.00031627	2.2076	0.0016046	726.853105356615	8.2366	0.12421	8.2366	8.2011	8.3253	0	435	28	1.03374239103424	0.0181091469845289	1.03374239103424	417.981820121447	0	7.32222484352923						210	15	4	NaN	NaN	NaN	0.00029138	1	17025	51.569	44.012	1	40374			7279	1942	6169	6334	7279	7279		
GGGEQETQELASK	13	Unmodified	_GGGEQETQELASK_			0	0	0	Q96QR8	Q96QR8	Q96QR8	PURB	Transcriptional activator protein Pur-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.315145	1332.61574	2.1557	0.0014385	-1.5388	-0.0010269	0.61687	0.00041165	667.313771632245	3.2971	0.18618	3.2971	3.2528	3.439	0	561	31	0.948993180460448	0.0202398580816178	0.948993180460448	384.037946452421	0	8.19065267716837						290	22	3	NaN	NaN	NaN	1.2391E-05	1	13365	126.48	80.99	1	61023			7280	2606	6170	6335	7280	7280		
GGGGGQDNGLEGLGNDSR	18	Unmodified	_GGGGGQDNGLEGLGNDSR_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.369503	1658.72445	2.503	0.0020784	-0.81482	-0.0006766	1.6882	0.0014018	830.368689903776	5.8775	0.15968	5.8775	5.8332	5.9929	0	435	40	1.03374239103424	0.0261576594975734	1.03374239103424	417.488964556396	0	10.5640769630575						416	19	4	NaN	NaN	NaN	5.812E-14	1	23275	102.26	95.512	1	121260			7281	586	6171	6336	7281	7281		
GGGGYTCQSGSGWDEFTK	18	Unmodified	_GGGGYTCQSGSGWDEFTK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.389047	1892.76354	2.5838	0.0024479	-0.45945	-0.00043528	2.1244	0.0020126	947.890175671036	9.6558	0.088679	9.6558	9.6204	9.709	0	312	49	1.11600111266355	0.0320059751751898	1.11600111266355	450.248134154054	0	12.9127385635096						411	11	4	NaN	NaN	NaN	3.2655E-05	1	29426	79.235	77.099	1	110900			7282	718	6172	6337	7282	7282		
GGGNQVSLLNVVMDLK	16	Unmodified	_GGGNQVSLLNVVMDLK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.442897	1642.87124	1.4993	0.0012331	-3.5489	-0.0029187	-2.0496	-0.0016857	822.940707303862	19.002	0.12413	19.002	18.949	19.073	0	351	49	1.08996939197032	0.0320677454165734	1.08996939197032	440.2320940253	0	12.9519698620975						431	15	4	NaN	NaN	NaN	0.00024568	1	22839	89.359	80.985	1	104070			7283	1776	6173	6338	7283	7283		
GGGPTSSEQIMK	12	Unmodified	_GGGPTSSEQIMK_			0	0	0	Q07812	Q07812	Q07812	BAX	Apoptosis regulator BAX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.287345	1190.56014	2.0033	0.0011945	-4.3303	-0.0025821	-2.3271	-0.0013876	596.287168911676	4.2371	0.24829	4.2371	4.1662	4.4145	0	585	52	0.932794566565362	0.0344339850202118	0.932794566565362	377.944625030731	0	13.9517746171024						398	29	4	NaN	NaN	NaN	0.051137	1	9167	43.168	26.516	1	100320			7284	1570	6174	6339	7284	7284		
GGGQSVQFTDIETLK	15	Unmodified	_GGGQSVQFTDIETLK_			0	0	0	Q02241	Q02241	Q02241	KIF23	Kinesin-like protein KIF23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.401752	1578.78895	1.3024	0.0010294	-0.070928	-5.6061E-05	1.2315	0.00097336	790.402815819137	11.66	0.16845	11.66	11.624	11.793	0	405	43	1.05384839605172	0.0281134808149035	1.05384839605172	425.787471741828	0	11.3587191126234						294	20	2	NaN	NaN	NaN	4.4363E-05	1	20933	74.733	47.786	1	93589			7285	1527	6175	6340	7285	7285		
GGGSCVLCCGDLEATALGR	19	Unmodified	_GGGSCVLCCGDLEATALGR_			0	0	0	Q86UK7	Q86UK7	Q86UK7	ZNF598	Zinc finger protein 598	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.934784	1951.85502	1.6496	0.0016115	4.2422	0.0041444	5.8918	0.0057559	976.939400081175	12.423	0.062107	12.423	12.396	12.458	0	231	28	1.16991841121525	0.0179427933549365	1.16991841121525	471.896933362529	0	7.23738431584889						167	8	4	NaN	NaN	NaN	0.0018121	1	30744	32.6	32.124	1	38078			7286	2166	6176	6341	7286	7286		
GGHFAAFEEPELLAQDIR	18	Unmodified	_GGHFAAFEEPELLAQDIR_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.49725	1998.97994	0.85205	0.00085247	-7.6037	-0.0076074	-6.7516	-0.006755	1000.48883824067	14.843	0.16848	14.843	14.772	14.941	0	204	73	1.18784641916898	0.047785072081151	1.18784641916898	479.048639705369	0	19.2713244820936						846	20	4	NaN	NaN	NaN	0.0028011	1	31612	38.14	36.292	1	247390			7287	551	6177	6342	7287	7287		
GGHFAAFEEPELLAQDIR	18	Unmodified	_GGHFAAFEEPELLAQDIR_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.333923	1998.97994	-1.0104	-0.00067424	0.66277	0.00044229	-0.34758	-0.00023195	667.668886639377	14.834	0.15075	14.834	14.772	14.923	0	657	46	0.884090832094921	0.0304926449170472	0.884090832094921	534.817896260737	0	18.4460822507544						503	18	5	NaN	NaN	NaN	1.0215E-10	1	31616	147.72	138.57	1	173720			7288	551	6177	6342	7288	7288		
GGHMDDGGYSMNFNMSSSR	19	Unmodified	_GGHMDDGGYSMNFNMSSSR_			0	0	0	P38159;Q96E39	P38159	P38159	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.933108	2048.77749	0.17635	0.00012061	-0.93708	-0.0006409	-0.76073	-0.00052029	684.266769787976	8.9287	0.14203	8.9287	8.8842	9.0262	0	684	43	0.86578508874114	0.0284973564255872	0.86578508874114	523.656395395166	0	17.236174586712						480	17	5	NaN	NaN	NaN	9.2581E-08	1	32514	113.34	113.34	1	138320			7289	1004	6178	6343	7289	7289		
GGIMLPEK	8	Unmodified	_GGIMLPEK_			0	0	0	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.733489	843.452425	-1.0489	-0.00044341	-1.2775	-0.00054006	-2.3264	-0.00098347	422.733034846028	6.8175	0.18621	6.8175	6.7466	6.9328	0	840	58	0.759569036796863	0.0389259287224015	0.759569036796863	309.204558275088	0	15.8459257986797						483	22	3	NaN	NaN	NaN	0.026266	1	1467	47.349	33.701	1	140350			7290	1347	6179	6344	7290	7290		
GGIMLPEK	8	Oxidation (M)	_GGIM(Oxidation (M))LPEK_	GGIM(1)LPEK	GGIM(47)LPEK	0	1	0	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.730946	859.447339	-0.85609	-0.00036874	-1.6273	-0.00070092	-2.4834	-0.0010697	430.730488216361	6.1525	0.31042	6.1525	6.0106	6.321	0	825	37	0.769815552739974	0.0245796540978664	0.769815552739974	313.282384217651	0	10.0028800556407						594	36	4	NaN	NaN	NaN	0.026681	1	1706	47.349	19.645	1	226150			7291	1347	6179	6345	7291	7291	482	
GGINLTATCPQSELDAETVK	20	Unmodified	_GGINLTATCPQSELDAETVK_			0	0	0	Q9Y295	Q9Y295	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.51498	2103.0154	2.198	0.0023134	-0.97883	-0.0010302	1.2192	0.0012832	1053.01567883209	11.598	0.12423	11.598	11.553	11.678	0	144	88	1.22760721615852	0.05758599445045	1.22760721615852	494.914879316902	0	23.2160296214063						743	15	5	NaN	NaN	NaN	1.9409E-16	1	33357	120.37	114.47	1	181730			7292	3339	6180	6346	7292	7292		
GGIQELIGLIK	11	Unmodified	_GGIQELIGLIK_			0	0	0	P35251	P35251	P35251	RFC1	Replication factor C subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.852981	1139.69141	-0.37114	-0.00021186	-0.25715	-0.00014679	-0.62828	-0.00035866	570.852872262931	17.974	0.088652	17.974	17.938	18.027	0	615	46	0.912521036363781	0.0304292729379168	0.912521036363781	369.919278543925	0	12.3354687105789						285	11	3	NaN	NaN	NaN	0.0045722	1	7791	53.517	31.13	1	69758			7293	966	6181	6347	7293	7293		
GGIVGMTLPIAR	12	Unmodified	_GGIVGMTLPIAR_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.844633	1183.67471	1.5152	0.00089828	-0.64406	-0.00038183	0.87114	0.00051645	592.844363203786	13.921	0.19508	13.921	13.841	14.036	0	519	76	0.97729762293174	0.0505401760734462	0.97729762293174	396.002500885763	0	20.4789571269523						734	23	4	NaN	NaN	NaN	0.0044007	1	8982	69.716	49.482	1	307790			7294	2667	6182	6348	7294	7294		
GGKPEPPAMPQPVPTA	16	Unmodified	_GGKPEPPAMPQPVPTA_			0	0	1	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.405783	1572.79701	2.621	0.0020638	-0.75381	-0.00059356	1.8671	0.0014702	787.405855908942	8.68	0.35486	8.68	8.5205	8.8753	0	396	112	1.05987478976334	0.0744180041782108	1.05987478976334	428.236509486382	0	30.0681803737739						3014	41	6	NaN	NaN	NaN	1.9803E-07	1	20755	137.4	120.41	1	2492100			7295	819	6183	6349	7295	7295		
GGLEMLPQALETHLTSR	17	Unmodified	_GGLEMLPQALETHLTSR_			0	0	0	P50336	P50336	P50336	PPOX	Protoporphyrinogen oxidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.324371	1851.95128	-0.76783	-0.00047477	-1.15	-0.00071109	-1.9178	-0.0011859	618.323684997739	14.959	0.079821	14.959	14.905	14.985	0	708	34	0.849494101904619	0.0224172293536435	0.849494101904619	514.170078648714	0	13.5683915332744						197	10	3	NaN	NaN	NaN	9.7178E-05	1	28544	39.82	28.849	1	45314			7296	1160	6184	6350	7296	7296		
GGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVR	41	Unmodified	_GGLGGGYGGASGMGGITAVTVNQSLLSPLVLEVDPNIQAVR_			0	0	0	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1309.02111	3924.0415	1.1056	0.0014472	0.359	0.00046994	1.4646	0.0019172	1309.6898677271	20.049	0.017725	20.049	20.04	20.057	0	117	46	1.24546401832526	0.0297613419787592	1.24546401832526	750.87271276284	0	17.9426938540569						81	3	3	NaN	NaN	NaN	0.021811	1	38751	11.392	11.389	1	34817		+	7297	28	6185	6351	7297	7297		
GGLGYVEETSEFEAR	15	Unmodified	_GGLGYVEETSEFEAR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.381017	1642.74748	2.5532	0.0020997	1.1017	0.00090606	3.6549	0.0030057	822.381611349535	10.924	0.13304	10.924	10.888	11.021	0	327	37	1.10599442759226	0.0240276252834357	1.10599442759226	446.704773743166	0	9.70461934350692						257	16	3	NaN	NaN	NaN	3.5408E-08	1	22822	103.76	98.062	1	54520			7298	3238	6186	6352	7298	7298		
GGLNTPLHESDFSGVTPQR	19	Unmodified	_GGLNTPLHESDFSGVTPQR_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.332582	2010.97592	-0.088746	-5.9578E-05	0.19351	0.00012991	0.10476	7.0331E-05	671.66721430447	9.5583	0.1064	9.5583	9.4962	9.6026	0	672	52	0.873923798053065	0.0345823239613182	0.873923798053065	528.645771289334	0	20.9192144260599						334	13	3	NaN	NaN	NaN	2.7592E-05	1	31819	38.668	37.08	1	68203			7299	2640	6187	6353	7299	7299		
GGLQEVAEQLELER	14	Unmodified	_GGLQEVAEQLELER_			0	0	0	Q9UIV1	Q9UIV1	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.907202	1569.79985	0.67667	0.0005318	-1.1526	-0.00090582	-0.47591	-0.00037402	785.906427474143	14.79	0.15961	14.79	14.719	14.879	0	408	67	1.0518390438467	0.0442027246723937	1.0518390438467	424.996794202072	0	17.8601625321509						440	19	3	NaN	NaN	NaN	0.0039318	1	20661	70.195	47.297	1	109630			7300	3242	6188	6354	7300	7300		
GGLSTFFEAQDALSAIHQK	19	Unmodified	_GGLSTFFEAQDALSAIHQK_			0	0	0	Q96KP1	Q96KP1	Q96KP1	EXOC2	Exocyst complex component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.009328	2019.00615	0.89505	0.00060327	-1.7597	-0.001186	-0.86461	-0.00058276	674.342580728353	15.535	0.097551	15.535	15.491	15.588	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	577.712026303176	0	11.013335985255						229	12	4	NaN	NaN	NaN	0.00039991	1	31969	53.363	49.858	1	53892			7301	2576	6189	6355	7301	7301		
GGLVSDAYGEDDFSR	15	Unmodified	_GGLVSDAYGEDDFSR_			0	0	0	Q9UHR5	Q9UHR5	Q9UHR5	SAP30BP	SAP30-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.349716	1586.68488	1.8949	0.0015052	-0.25948	-0.00020612	1.6354	0.0012991	794.850053775171	9.9307	0.13299	9.9307	9.8864	10.019	0	423	40	1.04178812298108	0.0261396123563653	1.04178812298108	420.89653412752	0	10.5607579905487						375	16	4	NaN	NaN	NaN	4.705E-06	1	21159	78.157	75.486	1	103250			7302	3222	6190	6356	7302	7302		
GGMGSGGLATGIAGGLAGMGGIQNEK	26	Unmodified	_GGMGSGGLATGIAGGLAGMGGIQNEK_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1131.05428	2260.094	0.20283	0.00022941	0.9129	0.0010325	1.1157	0.001262	1131.55778454319	14.87	0.097515	14.87	14.808	14.905	0	84	82	1.26725910986255	0.0534824258545257	1.26725910986255	510.667686219415	0	21.551825078215						632	12	5	NaN	NaN	NaN	0.0009323	1	35278	40.324	30.413	1	130430			7303	536	6191	6357	7303	7303		
GGMGSGGLATGIAGGLAGMGGIQNEK	26	Unmodified	_GGMGSGGLATGIAGGLAGMGGIQNEK_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.371943	2260.094	0.7567	0.00057083	3.0677	0.0023142	3.8244	0.002885	754.708561921396	14.879	0.08868	14.879	14.834	14.923	0	360	28	1.08395544855938	0.0180468052044267	1.08395544855938	655.200861174187	0	10.9084578403089						265	11	5	NaN	NaN	NaN	0.00022451	1	35279	76.049	73.155	1	70613			7304	536	6191	6357	7304	7304		
GGNNSFTHEALTLK	14	Unmodified	_GGNNSFTHEALTLK_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.919562	1487.73686	-0.054873	-2.7268E-05	0.28988	0.00014405	0.23501	0.00011678	497.253766420136	7.3851	0.15073	7.3851	7.3319	7.4826	0	726	37	0.837263974740672	0.0244704573832687	0.837263974740672	507.687728585311	0	14.8380335248549						316	18	4	NaN	NaN	NaN	0.0042416	1	18166	27.357	26.207	1	92296			7305	580	6192	6358	7305	7305		
GGPAEGQLQENDR	13	Unmodified	_GGPAEGQLQENDR_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.818387	1369.62222	2.2657	0.0015539	2.7194	0.001865	4.9852	0.0034189	685.820077212344	3.3769	0.17743	3.3769	3.3237	3.5012	0	528	31	0.971237000454584	0.020206269780618	0.971237000454584	392.930528618487	0	8.17479179910765						322	21	3	NaN	NaN	NaN	1.8413E-07	1	14466	117.45	107.93	1	74302			7306	1568	6193	6359	7306	7306		
GGPDFSNLEK	10	Unmodified	_GGPDFSNLEK_			0	0	0	Q8WVJ2	Q8WVJ2	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.256371	1062.49819	0.70084	0.00037302	0.0088128	4.6907E-06	0.70965	0.00037772	532.257533439056	7.4117	0.21277	7.4117	7.3585	7.5713	0	672	40	0.873923798053065	0.0264416320907981	0.873923798053065	354.580155933495	0	10.7282557710163						475	25	4	NaN	NaN	NaN	0.0035229	1	5782	72.365	44.629	1	150570			7307	2379	6194	6360	7307	7307		
GGPGGELPR	9	Unmodified	_GGPGGELPR_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.222134	838.429715	-0.052415	-2.2026E-05	0.46056	0.00019354	0.40814	0.00017151	420.222496352388	3.7228	0.27493	3.7228	3.6164	3.8914	0	819	49	0.773912161060781	0.0327637483280586	0.773912161060781	315.073523173712	0	13.3387096591799						505	32	3	NaN	NaN	NaN	0.019223	1	1414	47.349	29.655	1	131820			7308	1544	6195	6361	7308	7308		
GGPGSAVSPYPTFNPSSDVAALHK	24	Unmodified	_GGPGSAVSPYPTFNPSSDVAALHK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1178.58204	2355.14952	0.22395	0.00026394	0.057719	6.8026E-05	0.28167	0.00033197	1179.08395186364	11.926	0.10642	11.926	11.864	11.97	0	60	43	1.28308947459206	0.0276993500963147	1.28308947459206	516.91931400341	0	11.1592599999152						360	13	4	NaN	NaN	NaN	0.020534	1	36098	33.5	28.158	1	66805			7309	506	6196	6362	7309	7309		
GGPGSAVSPYPTFNPSSDVAALHK	24	Unmodified	_GGPGSAVSPYPTFNPSSDVAALHK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.057118	2355.14952	1.1582	0.00091044	1.5814	0.001243	2.7396	0.0021535	786.392894418394	11.926	0.28378	11.926	11.811	12.094	0	471	160	1.00957851518677	0.106879061040952	1.00957851518677	610.093056797191	0	64.587520511988						3213	33	6	NaN	NaN	NaN	3.3995E-42	1	36099	291.52	269.49	1	2530600			7310	506	6196	6362	7310	7310		
GGPPFAFVEFEDPR	14	Unmodified	_GGPPFAFVEFEDPR_			0	0	0	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.875173	1563.73579	1.3055	0.0010221	2.7969	0.0021896	4.1025	0.0032117	783.379169217388	16.315	0.38131	16.315	16.023	16.404	0	351	64	1.08996939197032	0.0421324538996455	1.08996939197032	440.418323612575	0	17.0242438483734						859	44	3	NaN	NaN	NaN	0.00034831	1	20459	57.003	54.332	1	209530			7311	1572	6197	6363	7311	7311		
GGPPFAFVEFEDPRDAEDAVYGR	23	Unmodified	_GGPPFAFVEFEDPRDAEDAVYGR_			0	0	1	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.727549	2540.16082	0.32049	0.00027168	-0.099677	-8.4499E-05	0.22081	0.00018719	848.061646148576	16.785	0.39016	16.785	16.502	16.892	0	507	142	0.985374541851584	0.0948318971281441	0.985374541851584	595.212154550565	0	57.282886265456						3519	45	5	NaN	NaN	NaN	7.0536E-08	1	36986	69.369	69.064	1	851340			7312	1572	6198	6364	7312	7312		
GGPSPGDVEAIK	12	Unmodified	_GGPSPGDVEAIK_			0	0	0	P09661	P09661	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.790578	1125.5666	1.5977	0.00090079	-2.3891	-0.001347	-0.79136	-0.00044616	563.789444865774	6.0904	0.25714	6.0904	5.984	6.2411	0	633	76	0.900343422309015	0.0507999489350157	0.900343422309015	365.037449771871	0	20.5964561391717						805	30	2	NaN	NaN	NaN	0.023621	1	7407	37.749	20.28	1	359620			7313	609	6199	6365	7313	7313		
GGPTVDPEELFR	12	Unmodified	_GGPTVDPEELFR_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.827692	1315.64083	0.76763	0.00050573	-0.76435	-0.00050357	0.0032777	2.1594E-06	658.826365611248	13.77	0.32809	13.77	13.646	13.974	0	543	46	0.961130371139249	0.0303324855868733	0.961130371139249	389.001115819474	0	12.2765559108134						452	38	4	NaN	NaN	NaN	0.00058348	1	12830	83.358	62.083	1	132680			7314	2520	6200	6366	7314	7314		
GGQQALLQHWSEYIK	15	Unmodified	_GGQQALLQHWSEYIK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.452111	1756.88967	1.7793	0.0015648	0.18908	0.00016629	1.9684	0.0017311	879.452461052039	13.407	0.10641	13.407	13.363	13.469	0	222	28	1.17589687683038	0.0179329343895447	1.17589687683038	474.679832631286	0	7.2390721179242						236	13	4	NaN	NaN	NaN	1.9595E-07	1	26069	119.55	95.746	1	56769			7315	1696	6201	6367	7315	7315		
GGSDPETTGIQIWSEVFTVEK	21	Unmodified	_GGSDPETTGIQIWSEVFTVEK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1140.55516	2279.09576	0.57953	0.00066099	0.079594	9.0781E-05	0.65912	0.00075177	1141.05611621913	19.614	0.11529	19.614	19.552	19.667	0	111	46	1.24942920585258	0.0297409520132894	1.24942920585258	503.457116441559	0	11.9841075194174						365	14	4	NaN	NaN	NaN	8.0098E-11	1	35456	110.06	106.42	1	79494			7316	2029	6202	6368	7316	7316		
GGSISVQVNSIK	12	Unmodified	_GGSISVQVNSIK_			0	0	0	Q14978	Q14978	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.832777	1187.651	1.1819	0.00070302	-2.0838	-0.0012395	-0.90191	-0.00053648	594.831178995655	7.4472	0.11524	7.4472	7.3851	7.5003	0	591	43	0.928742107665821	0.0283672188304905	0.928742107665821	376.313221459365	0	11.4939975412267						207	14	3	NaN	NaN	NaN	0.051621	1	9101	48.785	18.193	1	71614			7317	1781	6203	6369	7317	7317		
GGSTTGSQFLEQFK	14	Unmodified	_GGSTTGSQFLEQFK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.862263	1485.70997	1.2088	0.00089921	3.3442	0.0024877	4.5531	0.0033869	743.864542746527	11.571	0.19513	11.571	11.536	11.731	0	441	49	1.02971785871157	0.0321918235731047	1.02971785871157	416.264527017539	0	13.0135785255367						557	23	4	NaN	NaN	NaN	8.1241E-06	1	18091	101.45	90.474	1	349980			7318	1729	6204	6370	7318	7318		
GGSVYPDICTISLVAVSDVNK	21	Unmodified	_GGSVYPDICTISLVAVSDVNK_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1097.55664	2193.09873	-0.17956	-0.00019707	1.6698	0.0018327	1.4902	0.0016356	1098.05910956655	17.388	0.17734	17.388	17.273	17.45	0	84	55	1.26725910986255	0.0356427266539308	1.26725910986255	510.762998915049	0	14.3656382610228						442	21	3	NaN	NaN	NaN	0.00095377	1	34600	51.07	49.222	1	62934			7319	273	6205	6371	7319	7319		
GGSWIQEINVAEK	13	Unmodified	_GGSWIQEINVAEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.867348	1429.72014	1.4286	0.0010227	-4.7679	-0.0034132	-3.3393	-0.0023905	715.86607968599	12.635	0.23056	12.635	12.529	12.76	0	489	52	0.997481546940468	0.0342771221758933	0.997481546940468	403.378687070495	0	13.8615702538826						760	27	5	NaN	NaN	NaN	1.3873E-05	1	16382	101.45	79.402	1	307290			7320	1465	6206	6372	7320	7320		
GGTLTQYEGK	10	Unmodified	_GGTLTQYEGK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.264196	1052.51384	1.4321	0.00075507	0.04548	2.398E-05	1.4775	0.00077905	527.263991807958	4.042	0.13303	4.042	3.9977	4.1307	0	681	28	0.867820189810857	0.0183184547264154	0.867820189810857	352.146455032583	0	7.43331276377421						217	16	3	NaN	NaN	NaN	0.0076033	1	5527	49.16	25.585	1	60906			7321	1912	6207	6373	7321	7321		
GGTQVDTEIEEK	12	Unmodified	_GGTQVDTEIEEK_			0	0	0	Q9Y2H6	Q9Y2H6	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.312071	1304.60959	1.9233	0.0012565	0.90863	0.00059362	2.8319	0.0018501	653.312265918401	4.6095	0.11526	4.6095	4.5652	4.6805	0	513	31	0.981336640919867	0.0201978857694813	0.981336640919867	397.214152815952	0	8.1754677753371						189	14	3	NaN	NaN	NaN	0.00033336	1	12494	83.438	77.572	1	45808			7322	3342	6208	6374	7322	7322		
GGVADALLYR	10	Unmodified	_GGVADALLYR_			0	0	0	P14406	P14406	P14406	COX7A2	Cytochrome c oxidase subunit 7A2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.785099	1033.55564	0.48428	0.00025075	-1.1826	-0.00061233	-0.6983	-0.00036157	517.783646704603	10.605	0.32806	10.605	10.525	10.853	0	678	64	0.869855008346864	0.0427371451207755	0.869855008346864	353.055753311882	0	17.3461034542873						555	38	2	NaN	NaN	NaN	0.044677	1	5094	19.256	12.105	1	141150			7323	697	6209	6375	7323	7323		
GGVQVPAVDISSSLGGR	17	Unmodified	_GGVQVPAVDISSSLGGR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.928468	1597.84238	2.9677	0.0023739	0.97727	0.00078175	3.9449	0.0031557	799.928617212561	12.83	0.21282	12.83	12.742	12.955	0	348	43	1.09197348738011	0.0280554094154091	1.09197348738011	441.145440514702	0	11.3340809904414						691	25	3	NaN	NaN	NaN	1.4703E-05	1	21516	73.502	64.24	1	340300			7324	1584	6210	6376	7324	7324		
GGVSAVAGGVTAVGSAVVNK	20	Unmodified	_GGVSAVAGGVTAVGSAVVNK_			0	0	0	Q8WUH6	Q8WUH6	Q8WUH6	TMEM263	Transmembrane protein 263	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.4705	1698.92645	0.45191	0.00038433	1.1236	0.00095555	1.5755	0.0013399	850.471355927316	11.775	0.070929	11.775	11.74	11.811	0	123	25	1.24149774378079	0.0158672740006425	1.24149774378079	501.295088522533	0	6.40692789383576						155	9	3	NaN	NaN	NaN	1.6343E-07	1	24476	128.68	114.9	1	36763			7325	2366	6211	6377	7325	7325		
GGVVAGNVAHILDSNHGK	18	Unmodified	_GGVVAGNVAHILDSNHGK_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.30782	1743.90163	-0.0312	-1.8168E-05	0.52902	0.00030805	0.49782	0.00028988	582.642385340388	8.1922	0.070937	8.1922	8.1656	8.2366	0	690	25	0.86171403876517	0.0162864625285778	0.86171403876517	521.806296641846	0	9.86217969665597						156	9	4	NaN	NaN	NaN	5.4823E-05	1	25721	58.313	54.577	1	33840			7326	2072	6212	6378	7326	7326		
GGYFDEFGIIR	11	Unmodified	_GGYFDEFGIIR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.31422	1272.61389	1.5354	0.00097856	0.65376	0.00041665	2.1892	0.0013952	637.314783512616	15.473	0.29273	15.473	15.411	15.704	1.7764E-15	543	61	0.961130371139249	0.0404405239988286	0.961130371139249	389.137766114397	0	16.37336166034						1062	34	6	NaN	NaN	NaN	5.9717E-07	1	11566	150.17	138.81	1	1483800			7327	653	6213	6379	7327	7327		
GGYVLHIGTIYGDLK	15	Unmodified	_GGYVLHIGTIYGDLK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.959357	1604.85624	-0.91811	-0.00049207	-0.78988	-0.00042334	-1.708	-0.00091542	535.958888519256	13.345	0.097569	13.345	13.318	13.416	0	741	46	0.827064408645228	0.0305987056772422	0.827064408645228	501.166064863665	0	18.5415219829185						344	12	4	NaN	NaN	NaN	0.0020182	1	21752	47.57	42.42	1	110680			7328	1136	6214	6380	7328	7328		
GGYVLHIGTIYGDLK	15	Unmodified	_GGYVLHIGTIYGDLK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.435398	1604.85624	2.1252	0.0017075	0.55686	0.0004474	2.6821	0.0021549	803.435969068072	13.354	0.15965	13.354	13.309	13.469	0	294	46	1.12800004657306	0.0299911493699134	1.12800004657306	455.682666096995	0	12.11564391838						635	19	5	NaN	NaN	NaN	4.0939E-12	1	21753	148.76	139.02	1	446630			7329	1136	6214	6380	7329	7329		
GHADSVTGLSLSSEGSYLLSNAMDNTVR	28	Unmodified	_GHADSVTGLSLSSEGSYLLSNAMDNTVR_			0	0	0	Q96DI7	Q96DI7	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	961.125931	2880.35596	0.3015	0.00028978	-0.32769	-0.00031495	-0.02619	-2.5172E-05	961.459748524173	17.051	0.088651	17.051	17.016	17.105	0	447	61	1.02569221487577	0.0402342316744719	1.02569221487577	619.167568632823	0	24.2877259282986						435	11	5	NaN	NaN	NaN	9.9191E-07	1	38047	78.75	78.015	1	92821			7330	2506	6215	6381	7330	7330		
GHAGSVDSIAVDGSGTK	17	Unmodified	_GHAGSVDSIAVDGSGTK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.378808	1556.74306	2.7619	0.0021525	-1.8297	-0.001426	0.9322	0.00072654	779.377738721201	4.3169	0.07094	4.3169	4.2992	4.3701	0	435	46	1.03374239103424	0.0301819168183546	1.03374239103424	417.715453456322	0	12.1959331254148						207	9	3	NaN	NaN	NaN	0.00010109	1	20257	69.327	61.325	1	44165			7331	2823	6216	6382	7331	7331		
GHALLIDCR	9	Unmodified	_GHALLIDCR_			0	0	0	P51570	P51570	P51570	GALK1	Galactokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.776751	1053.53895	0.75955	0.00040087	0.72841	0.00038444	1.488	0.00078531	527.776753551366	5.2036	0.079796	5.2036	5.1504	5.2302	0	654	28	0.886123392477847	0.018298122879973	0.886123392477847	359.569057336055	0	7.42496908536992						95	10	2	NaN	NaN	NaN	0.0025252	1	5558	74.486	45.177	1	52071			7332	1189	6217	6383	7332	7332		
GHALLILRPEELGFLR	16	Unmodified	_GHALLILRPEELGFLR_			0	0	1	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.028106	1833.06249	0.40506	0.00024791	-0.47386	-0.00029002	-0.068806	-4.2111E-05	612.362128790862	15.278	0.14184	15.278	15.198	15.34	0	585	34	0.932794566565362	0.0222869832094168	0.932794566565362	564.632235891151	0	13.4905901168966						411	17	4	NaN	NaN	NaN	0.00017485	1	28064	57.042	48.668	1	141040			7333	3072	6218	6384	7333	7333		
GHASAPYFGK	10	Unmodified	_GHASAPYFGK_			0	0	0	Q8N183	Q8N183	Q8N183	NDUFAF2	Mimitin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.756341	1033.49813	1.6966	0.00087845	1.2727	0.00065894	2.9693	0.0015374	517.756603888103	3.6785	0.23057	3.6785	3.5633	3.7938	0	675	52	0.871889544407995	0.034596730190302	0.871889544407995	353.881775881616	0	14.0420909941685						612	27	3	NaN	NaN	NaN	0.0023188	1	5084	69.716	58.888	1	184160			7334	2238	6219	6385	7334	7334		
GHDAPVLSLSFDPK	14	Unmodified	_GHDAPVLSLSFDPK_			0	0	0	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.882998	1481.75144	0.80653	0.00059835	1.6257	0.0012061	2.4323	0.0018044	741.883760180985	11.731	0.11527	11.731	11.687	11.802	0	381	25	1.06991323971056	0.016055984619652	1.06991323971056	432.524221778654	0	6.49080878219962						229	14	3	NaN	NaN	NaN	0.0053908	1	17969	52.863	47.712	1	58159			7335	354	6220	6386	7335	7335		
GHDLNEDGLVSWEEYK	16	Unmodified	_GHDLNEDGLVSWEEYK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.955	1889.84317	0.94112	0.0005938	1.5652	0.00098759	2.5064	0.0015814	631.289411205976	11.465	0.14189	11.465	11.42	11.562	0	597	97	0.924688525662974	0.0648843599827201	0.924688525662974	559.59936473207	0	39.2664617540748						899	17	6	NaN	NaN	NaN	1.441E-06	1	29363	156.73	141.11	1	279700			7336	241	6221	6387	7336	7336		
GHDLNEDGLVSWEEYK	16	Unmodified	_GHDLNEDGLVSWEEYK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.928862	1889.84317	2.2341	0.0021133	1.3311	0.0012591	3.5652	0.0033724	946.431832168922	11.474	0.21288	11.474	11.385	11.598	0	252	52	1.15595906938629	0.0339199138812398	1.15595906938629	466.374319876627	0	13.685066526651						555	25	3	NaN	NaN	NaN	2.2683E-09	1	29364	113.86	108.77	1	231550			7337	241	6221	6387	7337	7337		
GHEENGDVVTEPQVAEK	17	Unmodified	_GHEENGDVVTEPQVAEK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.431769	1836.84899	2.9983	0.0027568	-1.7668	-0.0016245	1.2315	0.0011323	919.429861881207	4.6361	0.070956	4.6361	4.6095	4.6805	0	327	22	1.10599442759226	0.0140112886205801	1.10599442759226	446.309790018948	0	5.65407485439101						64	9	2	NaN	NaN	NaN	0.069058	1	28149	26.682	24.972	1	12106			7338	3202	6222	6388	7338	7338		
GHEFYNPQK	9	Unmodified	_GHEFYNPQK_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.26453	1118.51451	1.7067	0.00095619	2.222	0.0012449	3.9286	0.0022011	560.265853636562	3.2262	0.36347	3.2262	3.0755	3.439	0	678	67	0.869855008346864	0.04472566300559	0.869855008346864	352.70303453884	0	18.1350649389406						740	42	2	NaN	NaN	NaN	0.020525	1	7218	62.969	42.735	1	189130			7339	1462	6223	6389	7339	7339		
GHEGPVWQVAWAHPMYGNILASCSYDR	27	Unmodified	_GHEGPVWQVAWAHPMYGNILASCSYDR_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	776.109084	3100.40723	1.4102	0.0010945	-0.38476	-0.00029862	1.0254	0.00079584	776.359969219491	15.571	0.10646	15.571	15.526	15.633	-1.7764E-15	444	25	1.02770517576159	0.01610257649452	1.02770517576159	826.893524162801	0	12.9561634403441						196	13	5	NaN	NaN	NaN	0.072853	1	38360	3.062	3.0395	1	34396			7340	1275	6224	6390	7340	7340		
GHFGPINSVAFHPDGK	16	Unmodified	_GHFGPINSVAFHPDGK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.614473	1678.82159	1.1539	0.00064691	0.54836	0.00030742	1.7023	0.00095433	560.614796820997	8.2454	0.21294	8.2454	8.1745	8.3874	0	633	46	0.900343422309015	0.0304672723906905	0.900343422309015	545.364569136661	0	18.454925607726						716	25	5	NaN	NaN	NaN	2.268E-09	1	23882	161.23	146.25	1	426650			7341	1655	6225	6391	7341	7341		
GHFYGHLDFNLDK	13	Unmodified	_GHFYGHLDFNLDK_			0	0	0	P13807	P13807	P13807	GYS1	Glycogen [starch] synthase, muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.584402	1561.73138	-0.41969	-0.0002189	-1.4143	-0.00073768	-1.834	-0.00095658	521.918033508992	9.6292	0.15959	9.6292	9.5406	9.7002	0	729	31	0.835224628594324	0.020400551942483	0.835224628594324	506.23023068233	0	12.3647887793622						197	19	3	NaN	NaN	NaN	0.011038	1	20388	57.293	49.735	1	39126			7342	686	6226	6392	7342	7342		
GHGDSVDQLCWHPSNPDLFVTASGDK	26	Unmodified	_GHGDSVDQLCWHPSNPDLFVTASGDK_			0	0	0	Q96J01	Q96J01	Q96J01	THOC3	THO complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	710.573965	2838.26676	1.004	0.0007134	0.8736	0.00062076	1.8776	0.0013342	710.825740375625	12.653	0.070939	12.653	12.626	12.697	0	501	22	0.98941132619024	0.0141277691793039	0.98941132619024	796.410450773879	0	11.3719165353029						129	9	4	NaN	NaN	NaN	0.022047	1	37974	23.381	23.339	1	26954			7343	2564	6227	6393	7343	7343		
GHIASVLNAWPEDVIK	16	Unmodified	_GHIASVLNAWPEDVIK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.649183	1747.92572	-1.0627	-0.00062026	-1.1959	-0.000698	-2.2587	-0.0013183	583.982759933362	14.32	0.15959	14.32	14.249	14.409	0	759	31	0.814815566123307	0.0204232585244036	0.814815566123307	493.398237108729	0	12.3669701106712						441	19	4	NaN	NaN	NaN	1.5527E-06	1	25842	105.94	87.845	1	171910			7344	1106	6228	6394	7344	7344		
GHIASVLNAWPEDVIK	16	Unmodified	_GHIASVLNAWPEDVIK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.970136	1747.92572	2.3253	0.0020346	-0.84749	-0.00074153	1.4778	0.001293	875.470291822436	14.311	0.14185	14.311	14.249	14.391	0	264	76	1.14797626962532	0.0498616790164284	1.14797626962532	463.427599786101	0	20.1287072209517						661	17	3	NaN	NaN	NaN	5.4984E-09	1	25843	130.78	114.65	1	179770			7345	1106	6228	6394	7345	7345		
GHIIVDEFQNTNVK	14	Unmodified	_GHIIVDEFQNTNVK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.61425	1612.82092	-0.025825	-1.391E-05	-1.1472	-0.00061791	-1.1731	-0.00063182	538.614013825254	8.281	0.12425	8.281	8.2366	8.3608	0	735	40	0.831145085810763	0.0265262507146683	0.831145085810763	503.617528355929	0	16.0731081125739						285	15	3	NaN	NaN	NaN	0.00041497	1	21976	85.622	69.743	1	125640			7346	475	6229	6395	7346	7346		
GHLDALTADVK	11	Unmodified	_GHLDALTADVK_			0	0	0	P57740	P57740	P57740	NUP107	Nuclear pore complex protein Nup107	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.306395	1138.59824	1.2524	0.00071424	0.76411	0.00043578	2.0165	0.00115	570.307054791668	6.3387	0.12413	6.3387	6.3033	6.4274	-8.8818E-16	585	31	0.932794566565362	0.0202594899473871	0.932794566565362	378.142130556828	0	8.21291950799844						190	15	3	NaN	NaN	NaN	2.4798E-07	1	7763	90.142	53.932	1	55953			7347	1297	6230	6396	7347	7347		
GHLGDQDFFTMIGMEHPK	18	Unmodified	_GHLGDQDFFTMIGMEHPK_			0	0	0	Q8NBI6	Q8NBI6	Q8NBI6	XXYLT1	Xyloside xylosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.316999	2058.92917	0.32392	0.00022264	-0.24348	-0.00016735	0.080448	5.5293E-05	687.316573788871	14.134	0.070945	14.134	14.116	14.187	0	546	19	0.959108205975751	0.0121338311529138	0.959108205975751	580.082167192151	0	7.3387121783253						140	9	4	NaN	NaN	NaN	0.0019232	1	32678	57.279	51.376	1	23102			7348	2287	6231	6397	7348	7348		
GHLLDSFAR	9	Unmodified	_GHLLDSFAR_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.269616	1014.52468	0.58738	0.00029855	0.71533	0.00036358	1.3027	0.00066213	508.269891699475	7.3142	0.14187	7.3142	7.2698	7.4117	0	666	52	0.877991458330206	0.0345679267286869	0.877991458330206	356.446005773585	0	14.0338488414774						282	17	3	NaN	NaN	NaN	0.0013812	1	4619	100.75	87.107	1	101110			7349	3005	6232	6398	7349	7349		
GHPDLQGQPAEEIFESVGDR	20	Unmodified	_GHPDLQGQPAEEIFESVGDR_			0	0	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.678418	2180.01342	0.44434	0.00032334	-0.81297	-0.00059158	-0.36863	-0.00026824	728.012101490675	12.99	0.38132	12.99	12.875	13.256	0	624	37	0.906433495720521	0.0243518545960122	0.906433495720521	548.019934244872	0	14.7228691541668						929	44	5	NaN	NaN	NaN	1.0064E-05	1	34448	70.638	69.991	1	466410			7350	1125	6233	6399	7350	7350		
GHQLLEEVTQGDMSAADTFLSDLPR	25	Unmodified	_GHQLLEEVTQGDMSAADTFLSDLPR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	910.772829	2729.29666	0.494	0.00044992	0.66692	0.00060741	1.1609	0.0010573	911.107137195913	19.392	0.097573	19.392	19.339	19.437	0	486	70	0.999498404980629	0.0463877641696587	0.999498404980629	603.515916218776	0	28.0098035721574						418	12	5	NaN	NaN	NaN	2.494E-13	1	37686	106.98	104.53	1	72690			7351	2220	6234	6400	7351	7351		
GHQLLSADVDIK	12	Unmodified	_GHQLLSADVDIK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.351334	1294.68811	1.5416	0.00099952	1.2888	0.00083557	2.8304	0.0018351	648.352091735564	7.9438	0.079779	7.9438	7.9083	7.9881	8.8818E-16	501	28	0.98941132619024	0.0181617640607624	0.98941132619024	400.514686283643	0	7.35190010727166						161	10	3	NaN	NaN	NaN	0.00014971	1	12212	71.066	62.883	1	39791			7352	1082	6235	6401	7352	7352		
GHSLSDGLEEVQK	13	Unmodified	_GHSLSDGLEEVQK_			0	0	0	O75431	O75431	O75431	MTX2	Metaxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.846613	1397.67867	2.1241	0.0014866	0.12253	8.5749E-05	2.2467	0.0015723	699.846792713749	6.0372	0.13301	6.0372	6.0017	6.1347	0	516	40	0.979317271586824	0.026255437790293	0.979317271586824	396.120067806126	0	10.6199554521472						323	16	3	NaN	NaN	NaN	0.0077941	1	15371	47.361	41.663	1	112280			7353	333	6236	6402	7353	7353		
GHTDSVQDISFDHSGK	16	Unmodified	_GHTDSVQDISFDHSGK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.392447	1728.77034	3.274	0.0028333	-2.8325	-0.0024512	0.44145	0.00038203	865.390160220727	5.0883	0.053201	5.0883	5.0706	5.1238	0	387	49	1.06589869032374	0.032111976565327	1.06589869032374	430.331148230605	0	12.9644438751627						197	7	3	NaN	NaN	NaN	0.00019564	1	25285	62.494	60.51	1	37077			7354	1060	6237	6403	7354	7354		
GHTDYIHCLALR	12	Unmodified	_GHTDYIHCLALR_			0	0	0	Q86W42	Q86W42	Q86W42	THOC6	THO complex subunit 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.910232	1454.70887	-0.31637	-0.00015373	-0.64088	-0.00031141	-0.95725	-0.00046514	486.244230863572	7.7842	0.2217	7.7842	7.7487	7.9704	0	759	46	0.814815566123307	0.0306199842244862	0.814815566123307	494.179027053045	0	18.5707718918888						280	26	4	NaN	NaN	NaN	0.039133	1	17094	37.591	33.063	1	62390			7355	2177	6238	6404	7355	7355		
GHVDILAPTVQELAALEK	18	Unmodified	_GHVDILAPTVQELAALEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.354436	1903.04148	-0.87234	-0.00055424	-0.59015	-0.00037495	-1.4625	-0.0009292	635.688352195483	16.067	0.088666	16.067	16.032	16.12	0	723	49	0.839303037468863	0.0326091497098583	0.839303037468863	507.900472302014	0	19.733280828998						330	11	3	NaN	NaN	NaN	0.00049498	1	29674	49.097	42.575	1	72324			7356	2404	6239	6405	7356	7356		
GHVDILAPTVQELAALEK	18	Unmodified	_GHVDILAPTVQELAALEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.354436	1903.04148	0.83228	0.00052879	-2.1507	-0.0013664	-1.3184	-0.00083765	635.352763261827	16.067	0.18621	16.067	15.97	16.156	0	558	97	0.951016745717027	0.0646780299833856	0.951016745717027	575.503528775886	0	39.1396204718213						827	22	5	NaN	NaN	NaN	7.3016E-05	1	29675	84.102	67.971	1	353300			7357	2404	6239	6405	7357	7357		
GHVDILAPTVQELAALEK	18	Unmodified	_GHVDILAPTVQELAALEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.528015	1903.04148	1.7021	0.0016213	0.95632	0.00091092	2.6584	0.0025322	953.030017016466	16.067	0.1064	16.067	16.014	16.12	0	180	67	1.203763835057	0.0437789254006584	1.203763835057	485.636714697251	0	17.6618144567743						582	13	4	NaN	NaN	NaN	0.00013972	1	29678	46.206	34.526	1	168710			7358	2404	6239	6405	7358	7358		
GHVFEESQVAGTPMFVVK	18	Unmodified	_GHVFEESQVAGTPMFVVK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.664504	1960.97168	0.42722	0.00027968	0.11101	7.2675E-05	0.53823	0.00035236	654.998976675664	11.979	0.19509	11.979	11.926	12.121	0	579	112	0.936845902828289	0.0749238946359644	0.936845902828289	566.806981327292	0	45.3301726780127						1784	23	6	NaN	NaN	NaN	4.3369E-07	1	30943	152.23	134.81	1	1075000			7359	679	6240	6406	7359	7359		
GHVFEESQVAGTPMFVVK	18	Unmodified	_GHVFEESQVAGTPMFVVK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.493118	1960.97168	0.17698	0.0001737	1.2228	0.0012002	1.3998	0.0013739	981.996245899647	11.988	0.088664	11.988	11.944	12.032	0	114	43	1.24744674793813	0.0277677338051987	1.24744674793813	503.152168378094	0	11.1999935052334						307	11	4	NaN	NaN	NaN	2.5617E-07	1	30944	88.42	86.578	1	78740			7360	679	6240	6406	7360	7360		
GHVFEESQVAGTPMFVVK	18	Unmodified	_GHVFEESQVAGTPMFVVK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.493118	1960.97168	1.4088	0.0013827	0.41476	0.00040708	1.8235	0.0017898	981.995371908216	11.979	0.31925	11.979	11.926	12.245	-1.7764E-15	207	67	1.18585551256002	0.0438150117197025	1.18585551256002	478.309616747741	0	17.6725926906613						1591	37	7	NaN	NaN	NaN	1.3645E-26	1	30946	188.19	177.71	1	1585100			7361	679	6240	6406	7361	7361		
GHVFEESQVAGTPMFVVK	18	Oxidation (M)	_GHVFEESQVAGTPM(Oxidation (M))FVVK_	GHVFEESQVAGTPM(1)FVVK	GHVFEESQVAGTPM(93)FVVK	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.996142	1976.9666	1.1059	0.00072987	-0.61926	-0.00040871	0.48661	0.00032116	660.329750620478	10.339	0.23052	10.339	10.241	10.472	0	579	79	0.936845902828289	0.0526674138636499	0.936845902828289	566.774787486454	0	31.8628305999033						1014	27	5	NaN	NaN	NaN	0.00041259	1	31234	93.162	81.144	1	294850			7362	679	6240	6407	7362	7362	209	
GHVFEESQVAGTPMFVVK	18	Oxidation (M)	_GHVFEESQVAGTPM(Oxidation (M))FVVK_	GHVFEESQVAGTPM(1)FVVK	GHVFEESQVAGTPM(71)FVVK	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.490575	1976.9666	2.0117	0.0019906	-1.2325	-0.0012196	0.77916	0.00077097	989.99144685179	10.339	0.14187	10.339	10.241	10.383	0	210	31	1.18386433251387	0.0199159054005791	1.18386433251387	477.479336845791	0	8.03253636602034						271	17	3	NaN	NaN	NaN	0.00030652	1	31235	70.598	68.614	1	56640			7363	679	6240	6407	7363	7363	209	
GHVTQDAPIPGSPLYTIK	18	Unmodified	_GHVTQDAPIPGSPLYTIK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.007147	1892.99961	0.91954	0.00058116	-0.38972	-0.0002463	0.52983	0.00033485	632.007773340813	10.294	0.11529	10.294	10.25	10.365	0	585	124	0.932794566565362	0.0831389128090428	0.932794566565362	564.498102039711	0	50.3130701748798						751	14	3	NaN	NaN	NaN	0.062584	1	29450	31.722	30.353	1	172270			7364	1796	6241	6408	7364	7364		
GHVTQDAPIPGSPLYTIK	18	Unmodified	_GHVTQDAPIPGSPLYTIK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.507083	1892.99961	1.9117	0.0018113	-0.88897	-0.0008423	1.0227	0.00096904	947.505596907574	10.294	0.088658	10.294	10.259	10.347	0	237	34	1.16593139812432	0.0219330958171067	1.16593139812432	470.391969914051	0	8.84885008184881						200	11	3	NaN	NaN	NaN	0.060988	1	29451	8.3676	7.5607	1	33865			7365	1796	6241	6408	7365	7365		
GHYEVTGSDDETGK	14	Unmodified	_GHYEVTGSDDETGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.820792	1493.62703	1.7352	0.0012976	-1.2038	-0.00090026	0.53132	0.00039733	747.819588775733	2.6055	0.062043	2.6055	2.5878	2.6498	0	510	19	0.983355730988811	0.0121137032584996	0.983355730988811	397.503159264511	0	4.89673793918342						66	8	2	NaN	NaN	NaN	0.051934	1	18343	34.779	33.63	1	13538			7366	1584	6242	6409	7366	7366		
GHYTEGAELVDAVLDVVR	18	Unmodified	_GHYTEGAELVDAVLDVVR_			0	0	0	P04350;Q9BUF5	P04350;Q9BUF5	P04350	TUBB4A;TUBB6	Tubulin beta-4A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.333812	1941.97961	0.3432	0.00022251	-0.28482	-0.00018466	0.058385	3.7853E-05	648.667703064075	18.878	0.14185	18.878	18.807	18.949	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	586.431818517372	0	9.78212140611777						280	17	4	NaN	NaN	NaN	5.7598E-05	1	30557	78.157	74.652	1	88020			7367	512;2745	6243	6410	7367	7367		
GHYTEGAELVDAVLDVVR	18	Unmodified	_GHYTEGAELVDAVLDVVR_			0	0	0	P04350;Q9BUF5	P04350;Q9BUF5	P04350	TUBB4A;TUBB6	Tubulin beta-4A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.997079	1941.97961	1.0943	0.0010637	-0.40508	-0.00039374	0.68926	0.00066996	971.996679725517	18.887	0.070917	18.887	18.851	18.922	0	216	28	1.17988115188462	0.0179255454970533	1.17988115188462	475.932594507398	0	7.23068705923981						148	9	3	NaN	NaN	NaN	0.0045882	1	30558	39.166	34.611	1	27356			7368	512;2745	6243	6410	7368	7368		
GHYTEGAELVDSVLDVVR	18	Unmodified	_GHYTEGAELVDSVLDVVR_			0	0	0	P07437;P68371;Q9BVA1;Q13885;Q13509	P07437;P68371;Q9BVA1;Q13509	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.66545	1957.97452	2.0341	0.0013296	-1.003	-0.0006556	1.0311	0.00067399	653.998645411619	12.91	0.070951	12.91	12.866	12.937	0	507	82	0.985374541851584	0.0545758442821291	0.985374541851584	596.174007347909	0	33.0196269622854						252	9	3	NaN	NaN	NaN	0.02865	1	30860	37.146	35.436	1	45230			7369	1449;560;2761;1675	6244	6411	7369	7369		
GHYTEGAELVDSVLDVVR	18	Unmodified	_GHYTEGAELVDSVLDVVR_			0	0	0	P07437;P68371;Q9BVA1;Q13885;Q13509	P07437;P68371;Q9BVA1;Q13509	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.994537	1957.97452	2.6914	0.0026376	-1.4085	-0.0013803	1.283	0.0012573	979.99441099371	12.91	0.16851	12.91	12.857	13.026	0	210	43	1.18386433251387	0.0278861008115292	1.18386433251387	477.511626013606	0	11.2478575255469						525	20	4	NaN	NaN	NaN	0.0017844	1	30862	47.915	46.644	1	129120			7370	1449;560;2761;1675	6244	6411	7370	7370		
GHYTEGAELVDSVLDVVR	18	Unmodified	_GHYTEGAELVDSVLDVVR_			0	0	0	P07437;P68371;Q9BVA1;Q13885;Q13509	P07437;P68371;Q9BVA1;Q13509	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.994537	1957.97452	0.094183	9.2299E-05	1.9326	0.0018939	2.0268	0.0019862	979.996464842621	17.45	0.088668	17.45	17.406	17.495	0	84	82	1.26725910986255	0.0534751005302656	1.26725910986255	511.148893726125	0	21.5691789194581						508	11	3	NaN	NaN	NaN	0.00010662	1	30863	75.5	73.111	1	114300			7371	1449;560;2761;1675	6244	6411	7371	7371		
GHYTEGAELVDSVLDVVR	18	Unmodified	_GHYTEGAELVDSVLDVVR_			0	0	0	P07437;P68371;Q9BVA1;Q13885;Q13509	P07437;P68371;Q9BVA1;Q13509	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.994537	1957.97452	1.7481	0.0017132	1.207	0.0011829	2.9552	0.0028961	980.497124626691	17.442	0.40789	17.442	17.344	17.752	0	207	271	1.18585551256002	0.179985727077503	1.18585551256002	478.31475958254	0	72.5972336962992						3925	47	8	NaN	NaN	NaN	6.3259E-26	1	30864	188.19	172.64	1	4324200			7372	1449;560;2761;1675	6244	6411	7372	7372		
GHYTEGAELVDSVLDVVR	18	Unmodified	_GHYTEGAELVDSVLDVVR_			0	0	0	P07437;P68371;Q9BVA1;Q13885;Q13509	P07437;P68371;Q9BVA1;Q13509	P68371	TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.66545	1957.97452	1.0541	0.00068904	2.0107	0.0013143	3.0648	0.0020033	654.001167347546	17.442	0.58521	17.442	17.3	17.885	0	522	250	0.975277694896658	0.168283332131527	0.975277694896658	590.065172793839	0	101.815240902269						4249	67	7	NaN	NaN	NaN	6.6792E-21	1	30865	240.52	221.98	1	8242100			7373	1449;560;2761;1675	6244	6411	7373	7373		
GIAAQPLYAGYCNHENM	17	Unmodified	_GIAAQPLYAGYCNHENM_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.922003	1907.82945	2.3334	0.0022282	-1.0856	-0.0010367	1.2478	0.0011916	955.422754825932	10.339	0.070932	10.339	10.303	10.374	0	270	70	1.14398322290989	0.0459169083638418	1.14398322290989	461.510932682124	0	18.5240087271326						388	9	3	NaN	NaN	NaN	0.00017469	1	29766	47.57	46.832	1	79591			7374	562	6245	6412	7374	7374		
GIADVPEWFK	10	Unmodified	_GIADVPEWFK_			0	0	0	Q86V21	Q86V21	Q86V21	AACS	Acetoacetyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.300581	1160.58661	-0.43795	-0.00025458	-2.0586	-0.0011967	-2.4965	-0.0014512	581.299360430429	15.021	0.11526	15.021	14.976	15.092	0	624	40	0.906433495720521	0.0263939831579142	0.906433495720521	367.372419958251	0	10.6973335725559						240	14	2	NaN	NaN	NaN	0.053926	1	8356	33.426	25.78	1	57027			7375	2170	6246	6413	7375	7375		
GIAFPTSISVNNCVCHFSPLK	21	Unmodified	_GIAFPTSISVNNCVCHFSPLK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.389046	2347.14531	0.83376	0.00065316	-1.0823	-0.00084786	-0.24854	-0.0001947	783.722545096056	15.021	0.15962	15.021	14.976	15.136	0	552	55	0.955063035883597	0.0364065447798646	0.955063035883597	577.160642788377	0	22.0010868365463						850	19	6	NaN	NaN	NaN	2.716E-06	1	36022	65.421	59.805	1	436460			7376	3319	6247	6414	7376	7376		
GIALPANTAEGLLNVIGMDK	20	Unmodified	_GIALPANTAEGLLNVIGMDK_			0	0	0	P00813	P00813	P00813	ADA	Adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.040432	1996.06631	1.0139	0.0010129	2.0048	0.0020028	3.0186	0.0030158	999.544108779551	19.685	0.070937	19.685	19.649	19.72	0	168	25	1.21171599086077	0.0159021301822413	1.21171599086077	488.679927352266	0	6.41326175507811						167	9	4	NaN	NaN	NaN	0.022294	1	31569	31.767	18.422	1	35435			7377	486	6248	6415	7377	7377		
GIAVEVQDTPNACATFNFLCHEGR	24	Unmodified	_GIAVEVQDTPNACATFNFLCHEGR_			0	0	0	Q9BU61	Q9BU61	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.751483	2705.23262	0.031872	2.8772E-05	1.9078	0.0017223	1.9397	0.0017511	903.087609854591	14.852	0.070923	14.852	14.826	14.897	0	480	28	1.00353128488872	0.0181441995838212	1.00353128488872	605.978361053752	0	10.9563025009783						162	9	4	NaN	NaN	NaN	0.00066076	1	37618	15.309	13.574	1	34179			7378	2741	6249	6416	7378	7378		
GICEMELLDGK	11	Unmodified	_GICEMELLDGK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.799231	1263.58391	0.42643	0.00026985	1.4151	0.00089546	1.8415	0.0011653	632.800365520281	11.713	0.10639	11.713	11.678	11.784	0	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	386.710914437888	0	10.6486560206488						225	13	3	NaN	NaN	NaN	0.0029893	1	11311	44.57	39.074	1	67586			7379	1794	6250	6417	7379	7379		
GICIHTLTK	9	Unmodified	_GICIHTLTK_			0	0	0	Q9BZK7	Q9BZK7	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.789327	1041.5641	1.1213	0.0005851	-0.81082	-0.00042308	0.31051	0.00016202	521.789631899258	5.5849	0.15967	5.5849	5.5405	5.7002	0	669	28	0.875957769340875	0.0183032026669903	0.875957769340875	355.496800518272	0	7.42813205738059						220	19	3	NaN	NaN	NaN	0.0075663	1	5260	40.502	23.85	1	54066			7380	2814	6251	6418	7380	7380		
GIDIHGVPYVINVTLPDEK	19	Unmodified	_GIDIHGVPYVINVTLPDEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.708878	2078.10481	-0.23586	-0.00016362	-1.1532	-0.00079996	-1.389	-0.00096357	694.042538615172	15.952	0.12414	15.952	15.89	16.014	0	630	94	0.902373728295776	0.0629046585908323	0.902373728295776	545.734655261751	0	38.0432753015319						973	15	4	NaN	NaN	NaN	0.00012883	1	32997	73.305	61.626	1	273670			7381	2404	6252	6419	7381	7381		
GIDIHGVPYVINVTLPDEK	19	Unmodified	_GIDIHGVPYVINVTLPDEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.05968	2078.10481	0.58705	0.00061057	-1.4688	-0.0015276	-0.88173	-0.00091705	1040.55917506349	15.943	0.10641	15.943	15.89	15.996	0	129	61	1.23753038177212	0.0397008447430429	1.23753038177212	498.954677980405	0	16.0068168798805						410	13	3	NaN	NaN	NaN	0.010298	1	32998	22.039	17.732	1	95745			7382	2404	6252	6419	7382	7382		
GIDIHGVPYVINVTLPDEK	19	Unmodified	_GIDIHGVPYVINVTLPDEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.708878	2078.10481	0.071791	4.9802E-05	-0.62564	-0.00043401	-0.55385	-0.00038421	694.042693729579	15.952	0.097533	15.952	15.908	16.005	0	516	40	0.979317271586824	0.026255437790293	0.979317271586824	592.26831962229	0	15.8786784142055						266	12	4	NaN	NaN	NaN	0.00041681	1	32999	86.729	73.384	1	61991			7383	2404	6252	6419	7383	7383		
GIDPFSLDALSK	12	Unmodified	_GIDPFSLDALSK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.834985	1261.65542	1.0441	0.00065969	0.53174	0.00033598	1.5758	0.00099567	631.835660366097	15.615	0.26603	15.615	15.526	15.792	0	558	88	0.951016745717027	0.058683451496955	0.951016745717027	385.078913166086	0	23.7616843499894						1250	31	5	NaN	NaN	NaN	2.4726E-05	1	11274	127.93	35.501	1	1356300			7384	1016	6253	6420	7384	7384		
GIDQCIPLFVEAALER	16	Unmodified	_GIDQCIPLFVEAALER_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.985466	1829.93457	-0.52249	-0.00031923	-0.50874	-0.00031083	-1.0312	-0.00063006	611.319010901196	19.836	0.053202	19.836	19.809	19.862	0	624	13	0.906433495720521	0.00811840917474071	0.906433495720521	548.682584951008	0	4.91423778216165						42	7	2	NaN	NaN	NaN	0.038503	1	27973	29.98	28.27	1	8848.8			7385	429	6254	6421	7385	7385		
GIDQCIPLFVEAALER	16	Unmodified	_GIDQCIPLFVEAALER_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.974561	1829.93457	1.7562	0.0016087	-2.624	-0.0024035	-0.86775	-0.00079484	916.472998659072	19.845	0.11529	19.845	19.782	19.898	0	285	97	1.13399579921816	0.0638624741474227	1.13399579921816	457.622343839801	0	25.7716079044576						287	14	3	NaN	NaN	NaN	0.01874	1	27974	40.83	32.455	1	56887			7386	429	6254	6421	7386	7386		
GIDVQQVSLVINYDLPTNR	19	Unmodified	_GIDVQQVSLVINYDLPTNR_			0	0	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.383054	2143.12733	0.3712	0.00026555	-0.54069	-0.0003868	-0.1695	-0.00012126	715.716962978182	17.114	0.1596	17.114	17.06	17.22	0	513	58	0.981336640919867	0.0383733409647169	0.981336640919867	593.370162979859	0	23.202634685048						695	19	4	NaN	NaN	NaN	0.00022165	1	33925	61.067	59.796	1	190020			7387	1311;1739	6255	6422	7387	7387		
GIDVQQVSLVINYDLPTNR	19	Unmodified	_GIDVQQVSLVINYDLPTNR_			0	0	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.57094	2143.12733	0.99001	0.0010619	0.059727	6.4061E-05	1.0497	0.0011259	1073.07282310206	17.114	0.28375	17.114	17.034	17.317	0	117	103	1.24546401832526	0.0674360009755932	1.24546401832526	502.052261821567	0	27.1837614895721						2084	33	5	NaN	NaN	NaN	1.4526E-19	1	33926	175.43	167.06	1	959630			7388	1311;1739	6255	6422	7388	7388		
GIDYDFPSLILQK	13	Unmodified	_GIDYDFPSLILQK_			0	0	0	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.903399	1507.79225	0.62442	0.00047138	4.3068	0.0032512	4.9312	0.0037226	754.904083422666	17.255	0.18623	17.255	17.184	17.371	0	408	70	1.0518390438467	0.0462470262962584	1.0518390438467	425.149562822518	0	18.6928818878883						943	22	4	NaN	NaN	NaN	0.0032225	1	18740	55.754	49.888	1	356590			7389	2801	6256	6423	7389	7389		
GIEDNPMVVPLCNR	14	Unmodified	_GIEDNPMVVPLCNR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.39235	1612.77015	1.7232	0.0013913	-1.4469	-0.0011682	0.27626	0.00022305	807.392061604502	12.103	0.12416	12.103	12.05	12.174	0	414	52	1.04781950764076	0.0341637123767462	1.04781950764076	423.274048519215	0	13.800671532362						404	15	3	NaN	NaN	NaN	2.885E-17	1	21970	177.47	159.74	1	132880			7390	858	6257	6424	7390	7390		
GIEEEEILPGFILCDPNNLCHSGR	24	Unmodified	_GIEEEEILPGFILCDPNNLCHSGR_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	923.770543	2768.2898	0.84594	0.00078145	-0.32914	-0.00030405	0.51679	0.0004774	924.104568126929	17.193	0.18621	17.193	17.131	17.317	0	495	73	0.993446994398923	0.0484012810998887	0.993446994398923	599.819134210927	0	29.2235163906259						1199	22	7	NaN	NaN	NaN	3.0296E-13	1	37810	153.97	152.64	1	572860			7391	709	6258	6425	7391	7391		
GIEELFLDLCK	11	Unmodified	_GIEELFLDLCK_			0	0	0	Q9UL25	Q9UL25	Q9UL25	RAB21	Ras-related protein Rab-21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.844496	1335.67444	0.12445	8.3239E-05	-0.15977	-0.00010686	-0.035316	-2.3621E-05	668.844439080899	18.816	0.13301	18.816	18.781	18.914	0	504	37	0.987393073566096	0.0242240595168645	0.987393073566096	399.568193048165	0	9.80274618950608						374	16	4	NaN	NaN	NaN	0.0023358	1	13463	59.645	38.557	1	115560			7392	3273	6259	6426	7392	7392		
GIEGTVPYVTTDYNFK	16	Unmodified	_GIEGTVPYVTTDYNFK_			0	0	0	Q5SY16	Q5SY16	Q5SY16	NOL9	Polynucleotide 5-hydroxyl-kinase NOL9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.443617	1802.87268	1.8137	0.0016367	-0.56677	-0.00051147	1.2469	0.0011253	902.944203008891	13.327	0.12418	13.327	13.265	13.389	0	297	88	1.12600091227925	0.0579988938092726	1.12600091227925	454.447315729331	0	23.4080108812183						534	15	4	NaN	NaN	NaN	0.0030303	1	27283	50.116	43.739	1	146410			7393	1984	6260	6427	7393	7393		
GIEILTDMSRPVELSDR	17	Unmodified	_GIEILTDMSRPVELSDR_			0	0	1	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.334935	1929.98298	0.0078553	5.0615E-06	-1.5362	-0.00098985	-1.5284	-0.00098479	644.6684403366	14.311	0.1596	14.311	14.267	14.427	0	693	31	0.85967808974117	0.0203580790440647	0.85967808974117	520.177834162615	0	12.3183568259153						347	19	4	NaN	NaN	NaN	4.0233E-05	1	30296	70.806	65.418	1	95188			7394	1175	6261	6428	7394	7394		
GIEILTDMSRPVELSDR	17	Unmodified	_GIEILTDMSRPVELSDR_			0	0	1	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.334935	1929.98298	1.251	0.00080605	-1.6416	-0.0010578	-0.39063	-0.0002517	644.66829453712	14.302	0.15072	14.302	14.249	14.4	0	585	79	0.932794566565362	0.0527185204624995	0.932794566565362	564.419476906696	0	31.8991563729847						1020	18	5	NaN	NaN	NaN	1.4848E-06	1	30297	123.92	118.53	1	402840			7395	1175	6261	6428	7395	7395		
GIEILTDMSRPVELSDR	17	Unmodified	_GIEILTDMSRPVELSDR_			0	0	1	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.998765	1929.98298	2.31	0.0022315	-1.1899	-0.0011495	1.1201	0.001082	965.998044256123	14.302	0.17732	14.302	14.24	14.418	0	156	88	1.21966378336455	0.057633411266925	1.21966378336455	492.001547887053	0	23.2488067122206						1293	21	6	NaN	NaN	NaN	0.040731	1	30300	45.183	41.679	1	684250			7396	1175	6261	6428	7396	7396		
GIELGDIQSSIESIK	15	Unmodified	_GIELGDIQSSIESIK_			0	0	0	Q9BZF1	Q9BZF1	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.92506	1587.83557	1.3279	0.0010556	-2.9938	-0.0023799	-1.6659	-0.0013243	794.923285653257	15.801	0.11529	15.801	15.739	15.854	0	390	31	1.06389100039157	0.0200865957702232	1.06389100039157	429.823711367797	0	8.11520648217191						159	14	2	NaN	NaN	NaN	0.00010984	1	21209	85.813	76.552	1	78125			7397	2809	6262	6429	7397	7397		
GIEQAVQSHAVAEEEAR	17	Unmodified	_GIEQAVQSHAVAEEEAR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.634261	1822.88095	0.34027	0.0002071	2.0203	0.0012296	2.3606	0.0014367	608.635665710222	7.2166	0.16849	7.2166	7.1634	7.3319	0	705	82	0.851531465363931	0.0549477770794046	0.851531465363931	515.464249111876	0	33.2619707018072						653	20	4	NaN	NaN	NaN	3.6569E-05	1	27797	91.993	71.658	1	211250			7398	1915	6263	6430	7398	7398		
GIEQAVQSHAVAEEEAR	17	Unmodified	_GIEQAVQSHAVAEEEAR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.447754	1822.88095	2.5458	0.0023229	3.1234	0.00285	5.6692	0.0051729	912.451173093103	7.2166	0.22172	7.2166	7.1014	7.3231	0	276	85	1.13998907770044	0.0559873683484706	1.13998907770044	460.054293101918	0	22.5942771488209						779	26	4	NaN	NaN	NaN	0.0001756	1	27800	77.431	72.904	1	211360			7399	1915	6263	6430	7399	7399		
GIEQAVQSHAVAEEEARK	18	Unmodified	_GIEQAVQSHAVAEEEARK_			0	0	1	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.332582	1950.97592	1.2835	0.000836	0.70138	0.00045683	1.9849	0.0012928	651.667279826059	6.2411	0.0887	6.2411	6.2146	6.3033	0	591	22	0.928742107665821	0.0141865549073745	0.928742107665821	561.924262504798	0	8.5834047342222						197	11	4	NaN	NaN	NaN	7.7654E-07	1	30737	88.796	72.508	1	57922			7400	1915	6264	6431	7400	7400		
GIFEALRPLETLPVEGLIR	19	Unmodified	_GIFEALRPLETLPVEGLIR_			0	0	1	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.412285	2122.21503	0.8372	0.00059308	-0.42817	-0.00030332	0.40903	0.00028976	708.746089898818	19.915	0.070937	19.915	19.88	19.951	0	480	34	1.00353128488872	0.0221793099010968	1.00353128488872	606.82873106118	0	13.4116820130703						205	9	5	NaN	NaN	NaN	0.00034644	1	33651	60.324	59.053	1	91955			7401	1737	6265	6432	7401	7401		
GIFGFTDSDCIGK	13	Unmodified	_GIFGFTDSDCIGK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.826834	1415.63912	1.4364	0.0010182	4.4228	0.003135	5.8592	0.0041532	708.829629175537	13.77	0.15071	13.77	13.691	13.841	0	465	43	1.01360860968299	0.0281950841620375	1.01360860968299	409.939453112651	0	11.4030970844513						398	18	4	NaN	NaN	NaN	0.00055231	1	15950	53.028	47.162	1	140070			7402	818	6266	6433	7402	7402		
GIFLGDQWR	9	Unmodified	_GIFLGDQWR_			0	0	0	Q14671	Q14671	Q14671	PUM1	Pumilio homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.285266	1090.55598	0.41692	0.00022775	-1.2286	-0.00067114	-0.81164	-0.00044339	546.284881865083	12.733	0.1419	12.733	12.68	12.822	0	642	37	0.894250814548268	0.0243788876669334	0.894250814548268	362.708037240503	0	9.88807429853659						265	17	3	NaN	NaN	NaN	0.0013983	1	6478	56.014	47.251	1	55493			7403	1762	6267	6434	7403	7403		
GIFLHLSNQHEFGR	14	Unmodified	_GIFLHLSNQHEFGR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.286468	1653.83757	0.25768	0.00014231	-0.54814	-0.00030273	-0.29045	-0.00016041	552.286184655646	9.6115	0.19501	9.6115	9.4874	9.6824	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	536.817380211751	0	12.3124858528395						296	23	4	NaN	NaN	NaN	0.0010554	1	23162	69.276	52.516	1	75597			7404	268	6268	6435	7404	7404		
GIFNGFSVTLK	11	Unmodified	_GIFNGFSVTLK_			0	0	0	Q00325	Q00325	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.829506	1181.64446	0.64855	0.00038383	-1.2173	-0.00072044	-0.56876	-0.00033661	591.829377226163	15.402	0.14201	15.402	15.375	15.517	0	561	40	0.948993180460448	0.0263063536302146	0.948993180460448	384.541111410739	0	10.6595860438306						204	17	4	NaN	NaN	NaN	0.0067598	1	8929	33.723	23.635	1	71088			7405	1497	6269	6436	7405	7405		
GIFPVLCK	8	Unmodified	_GIFPVLCK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.264956	932.515359	-0.91569	-0.00042787	-1.7085	-0.00079833	-2.6242	-0.0012262	467.264439731054	12.653	0.38131	12.653	12.493	12.875	0	753	52	0.81889964927511	0.0347074776286075	0.81889964927511	332.846969473898	0	14.1070749718738						1327	44	4	NaN	NaN	NaN	0.044867	1	2921	33.813	17.265	1	818410			7406	699	6270	6437	7406	7406		
GIFTSEIGTK	10	Unmodified	_GIFTSEIGTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.784764	1051.55498	0.30715	0.0001618	-2.5831	-0.0013607	-2.2759	-0.0011989	526.783445546004	9.0617	0.13302	9.0617	9.0085	9.1415	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	356.277987705178	0	9.07770332392766						257	16	3	NaN	NaN	NaN	0.015211	1	5511	36.24	24.174	1	110350			7407	1465	6271	6438	7407	7407		
GIGIENIHYLNDGLWHMK	18	Unmodified	_GIGIENIHYLNDGLWHMK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	528.268921	2109.04658	-0.17236	-9.105E-05	-1.3995	-0.00073933	-1.5719	-0.00083038	528.268294478087	14.56	0.21281	14.56	14.48	14.693	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	696.431054233004	0	13.1297565252287						352	25	5	NaN	NaN	NaN	0.046788	1	33457	7.9995	7.5244	1	117700			7408	3276	6272	6439	7408	7408		
GIGIENIHYLNDGLWHMK	18	Unmodified	_GIGIENIHYLNDGLWHMK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.022803	2109.04658	1.1269	0.00079338	0.20886	0.00014704	1.3358	0.00094042	704.357398930367	14.56	0.13301	14.56	14.515	14.648	0	504	31	0.987393073566096	0.0201839240087274	0.987393073566096	597.094273918652	0	12.2055803037933						343	16	5	NaN	NaN	NaN	0.0012221	1	33458	62.398	58.326	1	121760			7409	3276	6272	6439	7409	7409		
GIGMGNIGPAGMGMEGIGFGINK	23	Unmodified	_GIGMGNIGPAGMGMEGIGFGINK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1089.52885	2177.04315	0.46399	0.00050553	2.4612	0.0026816	2.9252	0.0031871	1090.03346220963	17.238	0.23942	17.238	17.14	17.38	0	141	115	1.2295923935727	0.0753593437554716	1.2295923935727	495.60460397139	0	30.3746492843492						2148	28	6	NaN	NaN	NaN	4.432E-13	1	34409	130.12	123.92	1	659590			7410	1206	6273	6440	7410	7410		
GIGMGNIGPAGMGMEGIGFGINK	23	Oxidation (M)	_GIGMGNIGPAGM(Oxidation (M))GMEGIGFGINK_	GIGMGNIGPAGM(0.889)GM(0.111)EGIGFGINK	GIGM(-39)GNIGPAGM(9)GM(-9)EGIGFGINK	0	1	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1097.52631	2193.03807	0.82487	0.00090531	1.1759	0.0012905	2.0007	0.0021958	1098.02938247483	15.659	0.2394	15.659	15.562	15.801	0	132	91	1.23554629282893	0.0594941807546383	1.23554629282893	497.98138105295	0	23.9788621994682						1427	28	5	NaN	NaN	NaN	0.00039454	1	34597	66.66	49.389	3	294130			7411	1206	6273	6441	7411	7411	434	
GIGMNEPLVDCEGYPR	16	Unmodified	_GIGMNEPLVDCEGYPR_			0	0	0	O00233	O00233	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.911104	1805.80765	2.2199	0.0020066	-0.20537	-0.00018564	2.0145	0.0018209	904.412453572611	11.412	0.19514	11.412	11.305	11.5	0	312	67	1.11600111266355	0.0440142863306718	1.11600111266355	450.405866424239	0	17.7636854881769						746	23	4	NaN	NaN	NaN	1.0977E-06	1	27362	106.47	93.884	1	199860			7412	65	6274	6442	7412	7412		
GIGTDEFTLNR	11	Unmodified	_GIGTDEFTLNR_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.806759	1221.59897	1.5093	0.00092338	-1.5436	-0.00094438	-0.034317	-2.0995E-05	611.806018639406	9.8686	0.15959	9.8686	9.7889	9.9484	0	585	49	0.932794566565362	0.0324106998985512	0.932794566565362	377.83458074612	0	13.1281673873251						483	19	4	NaN	NaN	NaN	3.9786E-05	1	10063	105.36	86.102	1	214890			7413	669	6275	6443	7413	7413		
GIHEYDFEIK	10	Unmodified	_GIHEYDFEIK_			0	0	0	Q14344	Q14344	Q14344	GNA13	Guanine nucleotide-binding protein subunit alpha-13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.539911	1249.5979	-1.8565	-0.00077515	0.34769	0.00014517	-1.5088	-0.00062998	417.539723467888	8.5648	0.079796	8.5648	8.547	8.6268	0	834	22	0.763668499782291	0.0143451227380655	0.763668499782291	463.87316665392	0	8.713620520478						110	10	3	NaN	NaN	NaN	0.027976	1	10906	50.834	43.684	1	23940			7414	1749	6276	6444	7414	7414		
GIHPTIISESFQK	13	Unmodified	_GIHPTIISESFQK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.893366	1455.77218	2.0849	0.0015197	0.057738	4.2085E-05	2.1426	0.0015618	728.893605512009	8.5914	0.23961	8.5914	8.5382	8.7778	0	429	58	1.03776581230406	0.0382304341637099	1.03776581230406	419.597539644392	0	15.4576263010767						852	28	5	NaN	NaN	NaN	5.3627E-08	1	17134	164.31	145.8	1	633550			7415	1175	6277	6445	7415	7415		
GIHQSTIDLK	10	Unmodified	_GIHQSTIDLK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.308938	1110.60332	1.5575	0.00086646	-2.2077	-0.0012282	-0.65022	-0.00036172	556.307969594247	4.379	0.17732	4.379	4.3524	4.5297	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	368.389489360493	0	6.58325607042121						222	21	3	NaN	NaN	NaN	0.04785	1	7007	49.16	29.673	1	67649			7416	1745	6278	6446	7416	7416		
GIHVEVPPAEAER	13	Unmodified	_GIHVEVPPAEAER_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.367515	1402.72048	2.007	0.0014096	-3.0943	-0.0021733	-1.0873	-0.00076369	702.365388687013	6.4185	0.23054	6.4185	6.3387	6.5693	0	471	55	1.00957851518677	0.0362909172147328	1.00957851518677	408.345948868451	0	14.6786493595447						632	27	4	NaN	NaN	NaN	0.006013	1	15548	41.824	23.317	1	161070			7417	1003	6279	6447	7417	7417		
GIHYWEVELQK	11	Unmodified	_GIHYWEVELQK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.910227	1400.70885	-1.093	-0.00051142	-0.1532	-7.1682E-05	-1.2462	-0.0005831	467.910449765808	10.223	0.14188	10.223	10.179	10.321	0	735	28	0.831145085810763	0.0183592202134729	0.831145085810763	504.265524370024	0	11.1387553942411						181	17	3	NaN	NaN	NaN	0.038837	1	15468	25.254	25.254	1	51534			7418	1745	6280	6448	7418	7418		
GIIASSVGTILK	12	Unmodified	_GIIASSVGTILK_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.858264	1157.70197	0.14259	8.2681E-05	0.040633	2.3561E-05	0.18322	0.00010624	579.858464540433	13.371	0.070989	13.371	13.336	13.407	0	591	64	0.928742107665821	0.0425243253207723	0.928742107665821	376.424980618331	0	17.2353748177842						257	9	3	NaN	NaN	NaN	0.059507	1	8306	33.723	14.467	1	53349			7419	741	6281	6449	7419	7419		
GIIIMGEDDDSHPSEMR	17	Unmodified	_GIIIMGEDDDSHPSEMR_			0	0	0	Q9GZP4	Q9GZP4	Q9GZP4	PITHD1	PITH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.617114	1900.82951	1.0079	0.00063963	-0.67374	-0.00042757	0.33416	0.00021206	634.616552349941	9.0706	0.09755	9.0706	9.0262	9.1238	0	594	28	0.926715457081489	0.018242384517949	0.926715457081489	560.802425273411	0	11.0393901410197						260	12	4	NaN	NaN	NaN	3.9136E-05	1	29611	112.73	110.25	1	64826			7420	2826	6282	6450	7420	7420		
GIIIMGEDDDSHPSEMR	17	Unmodified	_GIIIMGEDDDSHPSEMR_			0	0	0	Q9GZP4	Q9GZP4	Q9GZP4	PITHD1	PITH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.422033	1900.82951	1.936	0.0018419	-0.2646	-0.00025175	1.6714	0.0015902	951.422217927489	9.0617	0.044336	9.0617	9.044	9.0883	0	198	19	1.1918274123006	0.0119429798452311	1.1918274123006	480.825235311964	0	4.81821951328033						64	6	3	NaN	NaN	NaN	6.3188E-10	1	29612	80.815	79.852	1	10819			7421	2826	6282	6450	7421	7421		
GIIRPGTAFELLEAQAATGYVIDPIK	26	Unmodified	_GIIRPGTAFELLEAQAATGYVIDPIK_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	915.172482	2742.49562	0.30422	0.00027841	0.50619	0.00046325	0.81041	0.00074167	915.506951250951	19.215	0.088668	19.215	19.171	19.259	0	450	61	1.02367897599655	0.040239786368728	1.02367897599655	618.101521070599	0	24.2969463525943						419	11	5	NaN	NaN	NaN	4.4649E-10	1	37737	59.357	58.622	1	88136			7422	1816	6283	6451	7422	7422		
GIISALLLPPETEEAK	16	Unmodified	_GIISALLLPPETEEAK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.974553	1679.93455	1.1937	0.0010039	-0.84155	-0.00070773	0.35215	0.00029615	840.97399003563	16.945	0.19513	16.945	16.892	17.087	0	351	55	1.08996939197032	0.0360563412671218	1.08996939197032	440.150853467673	0	14.5602523323677						728	23	4	NaN	NaN	NaN	1.5232E-05	1	23924	76.255	63.081	1	186480		+	7423	22	6284	6452	7423	7423		
GIISILDEECLRPGEATDLTFLEK	24	Unmodified	_GIISILDEECLRPGEATDLTFLEK_			0	0	1	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	907.133476	2718.3786	0.69858	0.0006337	-1.0144	-0.00092016	-0.31578	-0.00028646	907.467314499356	18.506	0.070996	18.506	18.479	18.55	0	474	25	1.00756305028564	0.0161248344128324	1.00756305028564	608.397890952987	0	9.73667627643965						227	9	5	NaN	NaN	NaN	2.4925E-06	1	37659	51.128	46.036	1	59230			7424	54	6285	6453	7424	7424		
GIIVHTMAAVEALGAK	16	Unmodified	_GIIVHTMAAVEALGAK_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.945076	1579.8756	2.4539	0.0019409	1.585	0.0012536	4.0389	0.0031945	790.946412589783	13.832	0.11527	13.832	13.797	13.912	0	327	28	1.10599442759226	0.0180169954366338	1.10599442759226	446.853408614443	0	7.27938190554687						241	14	4	NaN	NaN	NaN	1.3903E-12	1	20974	114.93	104.68	1	54524			7425	443	6286	6454	7425	7425		
GIIWGEDTLMEYLENPK	17	Unmodified	_GIIWGEDTLMEYLENPK_			0	0	0	P99999	P99999	P99999	CYCS	Cytochrome c	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.99592	2006.96593	0.30968	0.00020749	-0.55085	-0.00036907	-0.24117	-0.00016158	670.330356823161	19.791	0.026605	19.791	19.782	19.809	0	576	19	0.938871150116794	0.0121506427444233	0.938871150116794	567.940887865554	0	7.35015324258973						65	4	4	NaN	NaN	NaN	0.034358	1	31754	33.751	29.679	1	11782			7426	1494	6287	6455	7426	7426		
GIIWGEDTLMEYLENPK	17	Unmodified	_GIIWGEDTLMEYLENPK_			0	0	0	P99999	P99999	P99999	CYCS	Cytochrome c	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.49024	2006.96593	1.6939	0.0017015	-0.16212	-0.00016285	1.5318	0.0015387	1004.99158064007	19.8	0.10641	19.8	19.774	19.88	0	183	70	1.20177511391933	0.0457720210854262	1.20177511391933	484.652642176506	0	18.4589701516317						396	13	4	NaN	NaN	NaN	9.8242E-19	1	31755	142.08	134.5	1	133340			7427	1494	6287	6455	7427	7427		
GILAADESTGSIAK	14	Unmodified	_GILAADESTGSIAK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.853906	1331.69326	2.9638	0.0019764	1.049	0.00069956	4.0129	0.002676	666.854711733953	7.6865	0.41684	7.6865	7.5713	7.9881	0	516	112	0.979317271586824	0.0746754691587469	0.979317271586824	396.312287106063	0	30.2198346048443						1996	48	5	NaN	NaN	NaN	3.892E-08	1	13354	127.03	114.43	1	1912300			7428	504	6288	6456	7428	7428		
GILADEDSSRPVWLK	15	Unmodified	_GILADEDSSRPVWLK_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.633421	1684.87843	0.14504	8.1602E-05	-1.1339	-0.00063795	-0.98883	-0.00055635	562.632792571018	11.509	0.16855	11.509	11.456	11.624	0	681	76	0.867820189810857	0.0508775649945417	0.867820189810857	525.648842858171	0	30.8171364077748						928	20	4	NaN	NaN	NaN	0.0042235	1	24055	51.454	49.866	1	357690			7429	1127	6289	6457	7429	7429		
GILADEDSSRPVWLK	15	Unmodified	_GILADEDSSRPVWLK_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.446494	1684.87843	2.1836	0.0018417	1.6289	0.0013739	3.8125	0.0032156	843.447906533338	11.509	0.18629	11.509	11.456	11.642	0	300	52	1.12400150285141	0.0339993293213128	1.12400150285141	453.882776453498	0	13.729260993661						705	22	5	NaN	NaN	NaN	4.6844E-06	1	24057	119.43	106.25	1	323500			7430	1127	6289	6457	7430	7430		
GILEQGWQADSTTR	14	Unmodified	_GILEQGWQADSTTR_			0	0	0	Q99627	Q99627	Q99627	COPS8	COP9 signalosome complex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.383894	1560.75323	2.7016	0.002111	-1.913	-0.0014948	0.78863	0.00061622	781.88476239441	9.78	0.266	9.78	9.7002	9.9662	0	423	73	1.04178812298108	0.0482610995013308	1.04178812298108	420.957044079137	0	19.5009420264416						1113	31	5	NaN	NaN	NaN	0.00010748	1	20362	112.95	78.172	1	377710			7431	2661	6290	6458	7431	7431		
GILFVGSGVSGGEEGAR	17	Unmodified	_GILFVGSGVSGGEEGAR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.407369	1590.80018	1.6976	0.001352	0.65038	0.00051797	2.348	0.00187	796.407986947833	11.687	0.31931	11.687	11.562	11.882	0	408	115	1.0518390438467	0.0762976091671939	1.0518390438467	424.94772676771	0	30.8245788774271						1695	37	5	NaN	NaN	NaN	1.0446E-18	1	21299	181.44	169.48	1	1201000			7432	1205	6291	6459	7432	7432		
GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK	38	Unmodified	_GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1009.97915	4035.8875	0.94174	0.00095114	0.30188	0.00030489	1.2436	0.001256	1010.48091121534	20.19	0.40786	20.19	20.075	20.483	0	159	25	1.21767724410157	0.0158934053770952	1.21767724410157	978.730438565152	0	12.7746163364455						611	47	4	NaN	NaN	NaN	0.031721	1	38763	5.0498	4.9345	1	145190			7433	513	6292	6460	7433	7433		
GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK	38	Unmodified	_GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1009.97915	4035.8875	2.332	0.0023553	0.21283	0.00021496	2.5448	0.0025702	1010.48068666663	14.435	0.78918	14.435	14.311	15.101	0	150	292	1.22363604450103	0.193040543407829	1.22363604450103	983.519934076968	0	155.159880570591						6273	90	9	NaN	NaN	NaN	6.2537E-111	1	38764	342.12	320.37	1	5075200			7434	513	6292	6460	7434	7434		
GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK	38	Unmodified	_GILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1009.97915	4035.8875	0.24867	0.00025115	2.7499	0.0027774	2.9986	0.0030285	1010.48373329883	16.892	0.088734	16.892	16.847	16.936	0	132	10	1.23554629282893	0.0059522668854961	1.23554629282893	993.093006141554	0	4.7842437381604						43	11	2	NaN	NaN	NaN	0.065168	1	38765	1.1438	1.1239	1	153310			7435	513	6292	6460	7435	7435		
GILHLSPDVYQEMEASR	17	Unmodified	_GILHLSPDVYQEMEASR_			0	0	0	Q9NUL3	Q9NUL3	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.987647	1943.94111	-0.41177	-0.00026723	-0.85408	-0.00055429	-1.2659	-0.00082152	649.320848818243	13.114	0.062072	13.114	13.096	13.159	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	530.001270824397	0	9.84460825568306						122	8	3	NaN	NaN	NaN	0.033528	1	30603	23.931	22.089	1	25192			7436	3052	6293	6461	7436	7436		
GILLFGPPGTGK	12	Unmodified	_GILLFGPPGTGK_			0	0	0	O75351;Q6PIW4;Q9UN37	O75351;Q9UN37	Q9UN37	VPS4B;FIGNL1;VPS4A	Vacuolar protein sorting-associated protein 4B;Fidgetin-like protein 1;Vacuolar protein sorting-associated protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.839874	1155.66519	0.2711	0.00015692	-1.2923	-0.00074802	-1.0212	-0.00059109	578.839472766447	14.09	0.22167	14.09	13.992	14.214	0	606	40	0.918606045818476	0.0263610708448411	0.918606045818476	372.324501969185	0	10.6845286054424						672	26	4	NaN	NaN	NaN	0.0044644	1	8233	57.888	47.186	1	246090			7437	322;3291	6294	6462	7437	7437		
GILQELFLNK	10	Unmodified	_GILQELFLNK_			0	0	0	Q96QC0	Q96QC0	Q96QC0	PPP1R10	Serine/threonine-protein phosphatase 1 regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.845156	1173.67576	0.36359	0.00021374	-0.89056	-0.00052351	-0.52697	-0.00030977	587.844618196259	17.708	0.10641	17.708	17.663	17.77	0	603	31	0.920633820089869	0.0202735302015807	0.920633820089869	373.078853726528	0	8.21567190292609						220	13	3	NaN	NaN	NaN	0.0062289	1	8710	54.436	37.041	1	57011			7438	2603	6295	6463	7438	7438		
GILSGTSDLLLTFDEAEVR	19	Unmodified	_GILSGTSDLLLTFDEAEVR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.53095	2035.04735	1.0207	0.0010396	-0.054095	-5.5098E-05	0.96659	0.0009845	1019.03287420737	19.525	0.088662	19.525	19.49	19.579	0	159	64	1.21767724410157	0.0417402463881038	1.21767724410157	491.0191129607	0	16.8314377685275						389	11	4	NaN	NaN	NaN	2.3914E-26	1	32252	137.4	127.38	1	83646			7439	753	6296	6464	7439	7439		
GILSGTSDLLLTFDEAEVRK	20	Unmodified	_GILSGTSDLLLTFDEAEVRK_			0	0	1	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.054714	2163.14231	0.29548	0.00021335	-1.4396	-0.0010395	-1.1441	-0.00082612	722.38797981338	17.849	0.079793	17.849	17.823	17.903	0	561	22	0.948993180460448	0.0141669189625594	0.948993180460448	573.779371397698	0	8.56558932597966						214	10	5	NaN	NaN	NaN	0.0015561	1	34226	48.892	44.82	1	53081			7440	753	6297	6465	7440	7440		
GILTVDELLAIR	12	Unmodified	_GILTVDELLAIR_			0	0	0	P13473	P13473	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.895377	1311.7762	0.43942	0.00028866	-0.90919	-0.00059724	-0.46976	-0.00030859	656.894763299376	18.479	0.088729	18.479	18.444	18.532	0	531	58	0.969216233931596	0.0383998931056473	0.969216233931596	392.285741919566	0	15.542177306993						322	11	3	NaN	NaN	NaN	0.00019869	1	12717	83.358	77.492	1	97683			7441	677	6298	6466	7441	7441		
GILTVDELLAIR	12	Unmodified	_GILTVDELLAIR_			0	0	0	P13473	P13473	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.895377	1311.7762	0.68861	0.00045235	-0.89083	-0.00058518	-0.20222	-0.00013284	656.894794300287	18.479	0.097601	18.479	18.444	18.541	0	453	52	1.02166545906632	0.0342487168428018	1.02166545906632	413.51432063912	0	13.8620081087556						313	12	4	NaN	NaN	NaN	0.00015499	1	12718	76.572	62.577	1	106560			7442	677	6298	6466	7442	7442		
GIMEEDEACGR	11	Unmodified	_GIMEEDEACGR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.758094	1265.50164	2.0265	0.0012843	1.2154	0.00077026	3.2419	0.0020546	634.26097634209	4.7603	0.11527	4.7603	4.7337	4.8489	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	389.161241388419	0	8.18717176269286						180	14	4	NaN	NaN	NaN	0.0031211	1	11365	74.269	73.638	1	50486			7443	706	6299	6467	7443	7443		
GINTLVTYDMVPEPK	15	Unmodified	_GINTLVTYDMVPEPK_			0	0	0	P20674	P20674	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.931831	1675.84911	2.7015	0.0022664	0.23428	0.00019654	2.9358	0.0024629	838.932339660131	13.939	0.30148	13.939	13.797	14.099	0	231	175	1.16991841121525	0.11591037022139	1.16991841121525	472.445241832523	0	46.8077964798061						3265	35	5	NaN	NaN	NaN	1.2489E-11	1	23788	166.71	142.02	1	1540600			7444	783	6300	6468	7444	7444		
GINTLVTYDMVPEPK	15	Oxidation (M)	_GINTLVTYDM(Oxidation (M))VPEPK_	GINTLVTYDM(1)VPEPK	GINTLVTYDM(87)VPEPK	0	1	0	P20674	P20674	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.929288	1691.84402	1.9031	0.0016118	-1.0514	-0.00089046	0.85172	0.00072135	846.928823972672	11.802	0.34584	11.802	11.669	12.015	0	339	130	1.09798411722691	0.0860221411616118	1.09798411722691	443.361819804577	0	34.7354141562838						1740	40	3	NaN	NaN	NaN	0.00012858	1	24254	86.729	71.754	1	502180			7445	783	6300	6469	7445	7445	260	
GIPEFWLTVFK	11	Unmodified	_GIPEFWLTVFK_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.868631	1335.72271	0.044068	2.9476E-05	-0.17497	-0.00011703	-0.1309	-8.7557E-05	668.868476352426	19.933	0.053219	19.933	19.915	19.969	0	549	46	0.957085760909907	0.0303324855868733	0.957085760909907	387.303594536663	0	12.2746374241937						172	7	4	NaN	NaN	NaN	0.013276	1	13471	33.723	29.196	1	66009			7446	1269	6301	6470	7446	7446		
GIPEFWLTVFK	11	Unmodified	_GIPEFWLTVFK_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.868631	1335.72271	0.38031	0.00025438	0.53957	0.0003609	0.91988	0.00061528	668.868927952138	19.933	0.10642	19.933	19.915	20.022	0	495	43	0.993446994398923	0.0282496839404589	0.993446994398923	402.017880536588	0	11.431790651743						254	13	5	NaN	NaN	NaN	0.0060449	1	13472	53.517	46.826	1	163420			7447	1269	6301	6470	7447	7447		
GIPHLVTHDAR	11	Unmodified	_GIPHLVTHDAR_			0	0	0	P62701;Q8TD47;P22090	P62701	P62701	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	405.891278	1214.652	-0.15452	-6.2719E-05	1.3095	0.00053151	1.155	0.00046879	405.891850787311	4.0686	0.41675	4.0686	3.9179	4.3347	0	831	40	0.76571780291124	0.0266409461065718	0.76571780291124	465.263937019803	0	16.1875189846053						1136	48	5	NaN	NaN	NaN	0.003565	1	9868	81.163	62.827	1	1079400			7448	1394	6302	6471	7448	7448		
GIPHLVTHDAR	11	Unmodified	_GIPHLVTHDAR_			0	0	0	P62701;Q8TD47;P22090	P62701	P62701	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.333279	1214.652	2.624	0.0015963	-1.2668	-0.00077066	1.3572	0.00082564	608.332684681412	4.0598	0.34582	4.0598	3.9534	4.2992	0	561	70	0.948993180460448	0.0465807171253665	0.948993180460448	384.420495972582	0	18.8690316735508						1197	40	5	NaN	NaN	NaN	0.0025126	1	9869	81.099	73.948	1	536890			7449	1394	6302	6471	7449	7449		
GIPLESTDGER	11	Unmodified	_GIPLESTDGER_			0	0	0	P08651;Q12857;O00712;Q14938	P08651	P08651	NFIC;NFIA;NFIB;NFIX	Nuclear factor 1 C-type;Nuclear factor 1 A-type;Nuclear factor 1 B-type;Nuclear factor 1 X-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.290942	1172.56733	1.1654	0.00068442	-0.39215	-0.00023031	0.77323	0.00045411	587.291540529679	5.9041	0.18628	5.9041	5.8332	6.0195	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.439340571477	0	10.6856738290503						345	22	4	NaN	NaN	NaN	0.0032303	1	8665	41.796	38.188	1	89996			7450	587	6303	6472	7450	7450		
GIPVELWAHYVEELNSTQR	19	Unmodified	_GIPVELWAHYVEELNSTQR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.714804	2240.12258	0.18772	0.00014036	0.0048323	3.6132E-06	0.19255	0.00014397	748.049374436887	18.461	0.062122	18.461	18.426	18.488	0	495	25	0.993446994398923	0.0161426739918176	0.993446994398923	600.525388015796	0	9.75802998771371						163	8	4	NaN	NaN	NaN	0.0011955	1	35101	39.587	34.505	1	37352			7451	2900	6304	6473	7451	7451		
GIPVLVGLLDHPK	13	Unmodified	_GIPVLVGLLDHPK_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.413737	1356.81292	1.1757	0.00079879	0.51124	0.00034734	1.6869	0.0011461	679.414128110434	15.331	0.20392	15.331	15.189	15.393	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	419.071617974425	0	7.32604473705231						409	24	3	NaN	NaN	NaN	8.0947E-05	1	14116	81.335	78.233	1	119730			7452	276	6305	6474	7452	7452		
GIPVMGHSEGICHMYVDSEASVDK	24	Unmodified	_GIPVMGHSEGICHMYVDSEASVDK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	655.29755	2617.16109	0.93784	0.00061457	1.8864	0.0012361	2.8242	0.0018507	655.800695815454	10.179	0.20395	10.179	10.108	10.312	0	591	19	0.928742107665821	0.0121590616453449	0.928742107665821	747.883414504821	0	9.79126548202885						253	24	5	NaN	NaN	NaN	0.00057392	1	37302	46.353	46.204	1	50862			7453	1259	6306	6475	7453	7453		
GIPVVEHK	8	Unmodified	_GIPVVEHK_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.758352	877.502152	-1.2073	-0.00053094	2.6868	0.0011815	1.4795	0.0006506	439.759654573389	3.5721	0.25713	3.5721	3.4746	3.7317	0	768	28	0.808687310729125	0.0183898836962016	0.808687310729125	328.995121963359	0	7.48148505516787						354	30	3	NaN	NaN	NaN	0.047697	1	1980	36.57	26.491	1	84142			7454	652;1534	6307	6476	7454	7454		
GIRDDIEEEDDQEAYFR	17	Unmodified	_GIRDDIEEEDDQEAYFR_			0	0	1	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.643262	2098.90796	0.41093	0.00028791	1.1791	0.00082614	1.5901	0.0011141	700.978448378382	10.268	0.079803	10.268	10.232	10.312	0	609	28	0.916577990479294	0.0182550299424538	0.916577990479294	554.288619198497	0	11.0394919421301						191	10	4	NaN	NaN	NaN	0.00022773	1	33289	82.437	78.13	1	47538			7455	2189	6308	6477	7455	7455		
GISCMNTTLSESPFK	15	Unmodified	_GISCMNTTLSESPFK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.389473	1670.76439	2.2302	0.0018654	1.0591	0.00088581	3.2893	0.0027512	836.3909783285	11.873	0.33695	11.873	11.758	12.094	0	357	76	1.08596037261705	0.0501231385671799	1.08596037261705	438.551618093664	0	20.2416074074567						1676	39	5	NaN	NaN	NaN	6.0682E-33	1	23635	233	221.64	1	1391000			7456	1822	6309	6478	7456	7456		
GISCMNTTLSESPFK	15	Oxidation (M)	_GISCM(Oxidation (M))NTTLSESPFK_	GISCM(1)NTTLSESPFK	GISCM(110)NTTLSESPFK	0	1	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.38693	1686.75931	1.8429	0.0015561	1.5201	0.0012835	3.363	0.0028397	844.388652867294	9.4519	0.2394	9.4519	9.3544	9.5938	0	366	61	1.07994477139643	0.040117848274219	1.07994477139643	436.08827170477	0	16.1998313078515						727	28	5	NaN	NaN	NaN	1.3381E-05	1	24096	106.47	93.292	1	237810			7457	1822	6309	6479	7457	7457	572	
GISDLAQHYLMR	12	Unmodified	_GISDLAQHYLMR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.57485	1402.70272	-0.87291	-0.00040903	-1.0308	-0.00048301	-1.9037	-0.00089204	468.574502470384	12.83	0.14188	12.83	12.777	12.919	0	771	73	0.806643990516186	0.0490772653364376	0.806643990516186	489.393634128247	0	29.7753426771404						631	17	4	NaN	NaN	NaN	0.0044134	1	15545	58.916	50.442	1	253520			7458	1129	6310	6480	7458	7458		
GISDLAQHYLMR	12	Unmodified	_GISDLAQHYLMR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.358636	1402.70272	2.5868	0.0018168	1.2005	0.00084317	3.7873	0.00266	702.35933847516	12.822	0.23063	12.822	12.76	12.99	0	402	43	1.05585747106793	0.0281289969730538	1.05585747106793	427.064512161695	0	11.3773844473012						736	27	6	NaN	NaN	NaN	1.176E-16	1	15547	155.57	142.98	1	674790			7459	1129	6310	6480	7459	7459		
GISDLAQHYLMR	12	Oxidation (M)	_GISDLAQHYLM(Oxidation (M))R_	GISDLAQHYLM(1)R	GISDLAQHYLM(79)R	0	1	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.356093	1418.69763	1.6245	0.001154	1.3179	0.00093618	2.9424	0.0020902	710.35701059917	11.553	0.1242	11.553	11.5	11.624	0	396	34	1.05987478976334	0.0220937320698047	1.05987478976334	428.64221756469	0	8.93530669862969						344	15	4	NaN	NaN	NaN	0.0023122	1	16058	78.932	56.888	1	114680			7460	1129	6310	6481	7460	7460	403	
GISEETTTGVHNLYK	15	Unmodified	_GISEETTTGVHNLYK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.277415	1647.81041	0.16511	9.0856E-05	0.15333	8.4376E-05	0.31844	0.00017523	550.277589698596	6.7732	0.19504	6.7732	6.7289	6.9239	0	732	76	0.833184998970724	0.050962440106728	0.833184998970724	504.762389260694	0	30.8742032833106						1056	23	5	NaN	NaN	NaN	1.8366E-06	1	22968	106	83.105	1	505530			7461	822	6311	6482	7461	7461		
GISEETTTGVHNLYK	15	Unmodified	_GISEETTTGVHNLYK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.912484	1647.81041	3.2314	0.0026656	-1.2084	-0.00099685	2.0229	0.0016687	824.911823495387	6.7732	0.31032	6.7732	6.72	7.0303	0	360	85	1.08395544855938	0.05617275605671	1.08395544855938	437.792115747161	0	22.6872698080902						1249	36	6	NaN	NaN	NaN	8.2484E-36	1	22969	256.71	203.19	1	1169900			7462	822	6311	6482	7462	7462		
GISHVIVDEIHER	13	Unmodified	_GISHVIVDEIHER_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.935323	1502.78414	-0.70108	-0.0003519	1.1451	0.00057478	0.44406	0.00022289	501.935941139774	7.5536	0.30166	7.5536	7.5003	7.802	0	750	40	0.820941264895493	0.0265410084545386	0.820941264895493	497.74432427514	0	16.0920602772561						800	35	5	NaN	NaN	NaN	4.0756E-24	1	18605	275.93	263.97	1	729720			7463	1575	6312	6483	7463	7463		
GISHVIVDEIHER	13	Unmodified	_GISHVIVDEIHER_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.399347	1502.78414	1.7494	0.0013162	0.16122	0.0001213	1.9106	0.0014375	752.399300461658	7.5536	0.1952	7.5536	7.5003	7.6956	0	375	40	1.07392668217569	0.0260855828537037	1.07392668217569	434.090481150552	0	10.5440188794978						522	23	5	NaN	NaN	NaN	4.4682E-11	1	18606	162.21	139.31	1	253160			7464	1575	6312	6483	7464	7464		
GISLNPEQWSQLK	13	Unmodified	_GISLNPEQWSQLK_			0	0	0	P53999	P53999	P53999	SUB1	Activated RNA polymerase II transcriptional coactivator p15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.396273	1498.77799	1.4703	0.0011033	0.36637	0.00027492	1.8366	0.0013782	750.39688883252	14.657	0.44336	14.657	14.462	14.905	0	447	64	1.02569221487577	0.0422605286599267	1.02569221487577	414.603803039092	0	17.0824889247797						2025	51	6	NaN	NaN	NaN	1.3421E-11	1	18501	174.23	154.05	1	2319400			7465	1248	6313	6484	7465	7465		
GISQEQMQEFR	11	Unmodified	_GISQEQMQEFR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.816801	1351.61905	2.0579	0.0013928	0.67297	0.00045548	2.7309	0.0018483	676.817600138124	7.3053	0.37242	7.3053	7.2343	7.6068	0	510	55	0.983355730988811	0.0363562041234198	0.983355730988811	397.886322709007	0	14.7104815790107						840	43	5	NaN	NaN	NaN	1.5303E-11	1	13924	183.57	113.85	1	543420			7466	221	6314	6485	7466	7466		
GISVHISNAEPK	12	Unmodified	_GISVHISNAEPK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.338227	1250.6619	1.7397	0.0010897	-2.1191	-0.0013273	-0.37933	-0.00023759	626.336901568865	5.5051	0.13298	5.5051	5.4608	5.5937	0	561	58	0.948993180460448	0.0384264728149466	0.948993180460448	384.296123029744	0	15.5608542069047						426	16	4	NaN	NaN	NaN	0.0077424	1	10941	60	36.164	1	197870			7467	1634	6315	6486	7467	7467		
GITEPPFGIFVFNK	14	Unmodified	_GITEPPFGIFVFNK_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.421759	1564.82897	1.0344	0.00081041	-3.0762	-0.00241	-2.0418	-0.0015996	783.41878818676	18.701	0.21281	18.701	18.594	18.807	0	399	67	1.0578662689527	0.0442027246723937	1.0578662689527	427.443980995737	0	17.8606589125221						762	25	3	NaN	NaN	NaN	0.0015826	1	20502	81.335	76.808	1	182040			7468	1722	6316	6487	7468	7468		
GITGVDLFGTTDAVVK	16	Unmodified	_GITGVDLFGTTDAVVK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.930145	1591.84574	1.4511	0.0011564	-0.35223	-0.0002807	1.0988	0.0008757	796.929177585325	15.242	0.11527	15.242	15.216	15.331	0	264	58	1.14797626962532	0.0379522251090028	1.14797626962532	463.784975276429	0	15.3327836555446						317	14	4	NaN	NaN	NaN	0.0012417	1	21333	88.734	74.279	1	68129			7469	1241	6317	6488	7469	7469		
GITHIGYTDLPSR	13	Unmodified	_GITHIGYTDLPSR_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.252652	1428.73613	-1.4493	-0.00069167	0.19526	9.3189E-05	-1.254	-0.00059848	477.25327820743	7.8463	0.088673	7.8463	7.8108	7.8995	0	789	34	0.794378096728713	0.0224921689856458	0.794378096728713	481.866250257563	0	13.6436505159254						149	11	3	NaN	NaN	NaN	0.029189	1	16354	24.689	14.439	1	28205			7470	1664	6318	6489	7470	7470		
GITHIGYTDLPSR	13	Unmodified	_GITHIGYTDLPSR_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.37534	1428.73613	2.3023	0.001647	3.113	0.002227	5.4153	0.003874	715.378319137596	7.8729	0.22169	7.8729	7.7576	7.9793	0	450	49	1.02367897599655	0.0322007138420592	1.02367897599655	413.975553112799	0	13.0219616070716						593	26	4	NaN	NaN	NaN	0.0073384	1	16356	54.584	35.26	1	205400			7471	1664	6318	6489	7471	7471		
GITIDISLWK	10	Unmodified	_GITIDISLWK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.331882	1144.64921	-1.2604	-0.00072261	-0.27254	-0.00015626	-1.5329	-0.00087887	573.332082880187	16.75	0.1064	16.75	16.714	16.821	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	364.140680173801	0	8.23177494905582						152	13	2	NaN	NaN	NaN	0.07184	1	7931	33.426	25.78	1	35457			7472	1446	6319	6490	7472	7472		
GITINAAHVEYSTAAR	16	Unmodified	_GITINAAHVEYSTAAR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.433918	1672.85328	2.9176	0.0024433	-2.247	-0.0018818	0.67058	0.00056157	837.432454588515	7.9261	0.19509	7.9261	7.8463	8.0414	0	288	46	1.13199748998575	0.0299828961966486	1.13199748998575	457.138453574707	0	12.1080964598248						626	23	5	NaN	NaN	NaN	1.1451E-08	1	23705	117.77	107.28	1	268360			7473	1131	6320	6491	7473	7473		
GITINAAHVEYSTAAR	16	Unmodified	_GITINAAHVEYSTAAR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.625037	1672.85328	0.61103	0.00034134	0.33506	0.00018717	0.94609	0.00052851	558.625467877051	7.9261	0.15967	7.9261	7.864	8.0237	8.8818E-16	660	34	0.882057989648486	0.0223643734856528	0.882057989648486	534.304130851519	0	13.547155943854						351	19	5	NaN	NaN	NaN	7.5373E-05	1	23706	65.408	53.925	1	134640			7474	1131	6320	6491	7474	7474		
GITNLCVIGGDGSLTGANLFR	21	Unmodified	_GITNLCVIGGDGSLTGANLFR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.368639	2134.08409	0.64685	0.00046079	-0.00034885	-2.4851E-07	0.6465	0.00046054	712.367781379261	17.433	0.16847	17.433	17.344	17.513	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	616.554340542991	0	12.1776878359148						286	20	4	NaN	NaN	NaN	0.0035561	1	33805	51.07	50.551	1	79304			7475	1521	6321	6492	7475	7475		
GITNLCVIGGDGSLTGANLFR	21	Unmodified	_GITNLCVIGGDGSLTGANLFR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.04932	2134.08409	0.95304	0.0010179	1.334	0.0014248	2.2871	0.0024427	1068.55272591045	17.424	0.24829	17.424	17.326	17.575	0	117	100	1.24546401832526	0.0655019557600935	1.24546401832526	502.065956749238	0	26.4048592362057						1643	29	5	NaN	NaN	NaN	1.7502E-16	1	33806	168.74	158.71	1	611650			7476	1521	6321	6492	7476	7476		
GIVDQSQQAYQEAFEISK	18	Unmodified	_GIVDQSQQAYQEAFEISK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.00061	2039.98	0.44517	0.00030316	-0.86785	-0.00059101	-0.42268	-0.00028784	681.333899264065	14.134	0.070925	14.134	14.107	14.178	0	579	25	0.936845902828289	0.0162053462177963	0.936845902828289	566.652835181619	0	9.80183117809611						166	9	4	NaN	NaN	NaN	0.013369	1	32340	47.27	40.414	1	34532			7477	1427	6322	6493	7477	7477		
GIVDQSQQAYQEAFEISK	18	Unmodified	_GIVDQSQQAYQEAFEISK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.99728	2039.98	2.1511	0.0021963	1.0822	0.0011049	3.2333	0.0033012	1021.49949219923	14.134	0.38126	14.134	14.072	14.453	0	219	100	1.17788915118882	0.0657270782804582	1.17788915118882	474.967080469985	0	26.5035113424584						2780	44	6	NaN	NaN	NaN	8.6917E-57	1	32341	273.94	238.49	1	2008900			7478	1427	6322	6493	7478	7478		
GIVDSITGQR	10	Unmodified	_GIVDSITGQR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.285463	1044.55637	0.068492	3.5841E-05	-1.8816	-0.00098462	-1.8131	-0.00094878	523.284429580172	8.6712	0.19531	8.6712	8.6268	8.8221	0	702	28	0.853568545818287	0.0183337258580997	0.853568545818287	346.397465381368	0	7.44024155922273						222	23	2	NaN	NaN	NaN	0.00049999	1	5343	88.921	71.525	1	53671			7479	718	6323	6494	7479	7479		
GIVEESVTGVHR	12	Unmodified	_GIVEESVTGVHR_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.841133	1281.66771	1.8172	0.0011664	1.0021	0.00064318	2.8193	0.0018095	641.841980934966	5.8243	0.22172	5.8243	5.7889	6.0106	0	543	43	0.961130371139249	0.0283122781138182	0.961130371139249	389.108252235004	0	11.4620673578352						534	26	5	NaN	NaN	NaN	2.9644E-11	1	11819	151.22	136.46	1	297680			7480	242	6324	6495	7480	7480		
GIVLLEELLPK	11	Unmodified	_GIVLLEELLPK_			0	0	0	Q9Y3D6	Q9Y3D6	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.384114	1222.75368	0.40205	0.00024621	-0.47022	-0.00028795	-0.068164	-4.1743E-05	612.383751220753	19.437	0.18622	19.437	19.321	19.508	0	516	67	0.979317271586824	0.04447227026681	0.979317271586824	396.674718707313	0	18.0135956039845						470	22	3	NaN	NaN	NaN	0.012464	1	10103	41.796	29.2	1	96699			7481	3388	6325	6496	7481	7481		
GIVNEQFLLQR	11	Unmodified	_GIVNEQFLLQR_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.869694	1315.72483	0.86362	0.00056901	-1.1486	-0.00075679	-0.285	-0.00018778	658.869212193198	12.635	0.26603	12.635	12.493	12.76	0	510	43	0.983355730988811	0.0282614045260448	0.983355730988811	397.996188441073	0	11.4383136507953						492	31	4	NaN	NaN	NaN	2.5085E-08	1	12854	138.26	107.34	1	208870			7482	1145	6326	6497	7482	7482		
GIYAVGDVCGK	11	Unmodified	_GIYAVGDVCGK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.781699	1137.54884	1.7065	0.00097233	-0.36401	-0.0002074	1.3425	0.00076493	569.781710621261	7.2521	0.16847	7.2521	7.1989	7.3674	0	582	46	0.934820374997243	0.0303829256271585	0.934820374997243	378.967553331807	0	12.3169576700983						456	20	4	NaN	NaN	NaN	0.013863	1	7730	36.24	21.705	1	149370			7483	475	6327	6498	7483	7483		
GIYAYGFEK	9	Unmodified	_GIYAYGFEK_			0	0	0	P38919;P60842;Q14240	P38919;P60842;Q14240	P60842	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.260925	1046.5073	0.84931	0.00044526	0.89037	0.00046679	1.7397	0.00091205	524.261315608921	8.8842	0.24844	8.8842	8.7866	9.0351	0	651	46	0.888155670855968	0.0304799546936941	0.888155670855968	360.424950199105	0	12.3691561209739						589	29	4	NaN	NaN	NaN	0.010947	1	5390	36.211	16.723	1	378760			7484	1311;1008;1739	6328	6499	7484	7484		
GIYETPAGTILYHAHLDIEAFTMDR	25	Unmodified	_GIYETPAGTILYHAHLDIEAFTMDR_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	945.465448	2833.37452	0.79402	0.00075072	0.18212	0.00017218	0.97614	0.0009229	945.800135114032	19.082	0.14188	19.082	19.011	19.153	0	429	40	1.03776581230406	0.0261432202901304	1.03776581230406	626.505813034437	0	15.7828281573874						485	17	5	NaN	NaN	NaN	0.02003	1	37959	10.973	10.497	1	91333			7485	488	6329	6500	7485	7485		
GIYLWDVEGR	10	Unmodified	_GIYLWDVEGR_			0	0	0	P04181	P04181	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.308938	1206.60332	0.57783	0.00034919	7.2571	0.0043855	7.8349	0.0047347	604.313642599504	14.196	0.15071	14.196	14.143	14.294	0	573	40	0.940896116921038	0.0263209282177764	0.940896116921038	381.169042368697	0	10.6629444235097						320	18	3	NaN	NaN	NaN	0.0062289	1	9642	54.436	35.18	1	107820			7486	510	6330	6501	7486	7486		
GIYQSLEGAVQAGQLK	16	Unmodified	_GIYQSLEGAVQAGQLK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.446494	1660.87843	2.4096	0.0020035	0.29821	0.00024795	2.7078	0.0022514	831.446351443949	14.107	0.13301	14.107	14.054	14.187	0	252	187	1.15595906938629	0.123785010036542	1.15595906938629	466.842580720852	0	49.991487649036						1337	16	3	NaN	NaN	NaN	0.0036662	1	23379	71.219	63.662	1	323600			7487	1816	6331	6502	7487	7487		
GLAEDIENEVVQITWNR	17	Unmodified	_GLAEDIENEVVQITWNR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.669083	1984.98542	-0.76688	-0.00050819	0.065995	4.3733E-05	-0.70088	-0.00046445	663.003451520224	19.978	0.04434	19.978	19.969	20.013	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	548.360400512955	0	9.82270488541235						83	6	4	NaN	NaN	NaN	0.00013737	1	31364	117.21	101.68	1	36366			7488	1796	6332	6503	7488	7488		
GLAFLDELR	9	Unmodified	_GLAFLDELR_			0	0	0	Q68CP9	Q68CP9	Q68CP9	ARID2	AT-rich interactive domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.287474	1032.5604	-0.18382	-9.5088E-05	-2.2088	-0.0011426	-2.3926	-0.0012377	517.28619692785	15.597	0.097474	15.597	15.553	15.65	1.7764E-15	672	25	0.873923798053065	0.0162729009073457	0.873923798053065	354.71168748578	0	6.60491012373478						171	12	3	NaN	NaN	NaN	0.014168	1	5068	60.589	45.091	1	36489			7489	2020	6333	6504	7489	7489		
GLAGAVSELLR	11	Unmodified	_GLAGAVSELLR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.319306	1084.62406	-0.37031	-0.0002012	-0.91506	-0.00049717	-1.2854	-0.00069837	543.318743477472	14.861	0.13299	14.861	14.817	14.95	0	642	76	0.894250814548268	0.0507225103504416	0.894250814548268	362.732784062114	0	20.5744485716003						470	16	2	NaN	NaN	NaN	0.0025186	1	6338	67.507	45.121	1	194530			7490	3406	6334	6505	7490	7490		
GLAILSETEFLSCANDASIR	20	Unmodified	_GLAILSETEFLSCANDASIR_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.03862	2166.06268	0.6629	0.00071861	-0.84933	-0.00092071	-0.18643	-0.00020209	1084.03817775818	17.69	0.097514	17.69	17.646	17.743	0	132	31	1.23554629282893	0.0198395317796147	1.23554629282893	498.02042407802	0	7.99686105469232						175	12	3	NaN	NaN	NaN	2.7821E-07	1	34258	52.201	48.351	1	33225			7491	3330	6335	6506	7491	7491		
GLAIQHPGTQVLIGTDSIPNLHK	23	Unmodified	_GLAIQHPGTQVLIGTDSIPNLHK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	603.086675	2408.31759	0.12347	7.4462E-05	0.19033	0.00011479	0.3138	0.00018925	603.33739607693	12.165	0.079757	12.165	12.13	12.21	0	588	28	0.93076847747433	0.0182373300269247	0.93076847747433	749.858176695623	0	14.6926022665646						187	10	4	NaN	NaN	NaN	0.067345	1	36396	26.21	25.399	1	56440			7492	1991	6336	6507	7492	7492		
GLAIQHPGTQVLIGTDSIPNLHK	23	Unmodified	_GLAIQHPGTQVLIGTDSIPNLHK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.779807	2408.31759	1.3943	0.0011207	1.6808	0.001351	3.0751	0.0024717	804.115400784053	12.165	0.070883	12.165	12.13	12.201	0	402	34	1.05585747106793	0.0220967798859319	1.05585747106793	637.977060422826	0	13.3514598918152						241	9	4	NaN	NaN	NaN	0.000263	1	36397	46.528	46.528	1	65826			7493	1991	6336	6507	7493	7493		
GLAITFVSDENDAK	14	Unmodified	_GLAITFVSDENDAK_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.369921	1478.72529	0.925	0.00068484	2.0859	0.0015443	3.0109	0.0022292	740.3715129256	11.899	0.3015	11.899	11.802	12.103	0	423	85	1.04178812298108	0.056351284675243	1.04178812298108	421.162305861354	0	22.7810592850328						1045	35	5	NaN	NaN	NaN	2.5336E-17	1	17858	192.14	167.32	1	578440			7494	1705;51	6337	6508	7494	7494		
GLALALFGGEPK	12	Unmodified	_GLALALFGGEPK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.837331	1171.66011	0.8005	0.00046977	0.89175	0.00052331	1.6923	0.00099308	586.837811414219	15.189	0.16845	15.189	15.145	15.313	0	504	40	0.987393073566096	0.0262445464858834	0.987393073566096	400.140448830826	0	10.6355866689395						372	20	3	NaN	NaN	NaN	0.019793	1	8659	40.386	21.13	1	99524			7495	1144	6338	6509	7495	7495		
GLALDLEDGNFLK	13	Unmodified	_GLALDLEDGNFLK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.872099	1403.72965	0.9421	0.00066217	0.46602	0.00032755	1.4081	0.00098973	702.872341547059	16.209	0.15073	16.209	16.156	16.307	0	444	37	1.02770517576159	0.0241572026210712	1.02770517576159	415.674738508941	0	9.77083614975459						374	18	4	NaN	NaN	NaN	0.00047542	1	15584	51.531	41.788	1	135730			7496	2001	6339	6510	7496	7496		
GLALSNSDVIR	11	Unmodified	_GLALSNSDVIR_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.81967	1143.62479	1.0914	0.00062517	0.49982	0.00028631	1.5912	0.00091148	572.819410772786	8.9819	0.15092	8.9819	8.8753	9.0262	0	603	49	0.920633820089869	0.0324286658287691	0.920633820089869	373.192705020793	0	13.1454452973196						495	18	4	NaN	NaN	NaN	5.4866E-05	1	7900	103.8	83.57	1	200180			7497	3434	6340	6511	7497	7497		
GLALVLSNVHFTGEK	15	Unmodified	_GLALVLSNVHFTGEK_			0	0	0	P42575	P42575	P42575	CASP2	Caspase-2;Caspase-2 subunit p18;Caspase-2 subunit p13;Caspase-2 subunit p12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.940847	1583.86714	2.2184	0.0017591	2.6306	0.0020859	4.849	0.003845	792.943066769975	13.558	0.12412	13.558	13.496	13.62	0	309	31	1.11800162319566	0.0200064846869903	1.11800162319566	451.694763695052	0	8.08301543179169						213	15	3	NaN	NaN	NaN	3.1167E-08	1	21093	89.382	79.132	1	46574			7498	1051	6341	6512	7498	7498		
GLAPDLPEDLYHLIK	15	Unmodified	_GLAPDLPEDLYHLIK_			0	0	0	P62277	P62277	P62277	RPS13	40S ribosomal protein S13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.310167	1692.90867	0.29359	0.00016597	-0.47113	-0.00026634	-0.17754	-0.00010037	565.309880156025	17.504	0.38128	17.504	17.38	17.761	0	630	109	0.902373728295776	0.0731773647084977	0.902373728295776	546.557196236947	0	44.3226725567696						2468	44	6	NaN	NaN	NaN	0.00027123	1	24292	94.791	82.209	1	2864300			7499	1379	6342	6513	7499	7499		
GLAPDLPEDLYHLIK	15	Unmodified	_GLAPDLPEDLYHLIK_			0	0	0	P62277	P62277	P62277	RPS13	40S ribosomal protein S13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.461613	1692.90867	1.6992	0.00144	1.6186	0.0013717	3.3178	0.0028117	847.46315749164	17.504	0.26599	17.504	17.433	17.699	0	255	106	1.15396378101328	0.0699313026434745	1.15396378101328	465.963804556246	0	28.2378497258509						1456	31	6	NaN	NaN	NaN	3.9177E-08	1	24294	119.55	94.861	1	1491400			7500	1379	6342	6513	7500	7500		
GLAPNQESHLQVPEK	15	Unmodified	_GLAPNQESHLQVPEK_			0	0	0	O95359	O95359	O95359	TACC2	Transforming acidic coiled-coil-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.928468	1645.84238	2.9053	0.0023937	-2.1756	-0.0017926	0.72964	0.00060117	823.926233877914	6.0638	0.053228	6.0638	6.0283	6.0815	0	324	25	1.1079963157843	0.0160140040917682	1.1079963157843	447.506299337964	0	6.46786239863758						77	7	2	NaN	NaN	NaN	0.070925	1	22923	23.931	19.103	1	14648			7501	424	6343	6514	7501	7501		
GLASWDEGHVLTFLK	15	Unmodified	_GLASWDEGHVLTFLK_			0	0	0	Q6ZRP7	Q6ZRP7	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.294629	1671.86206	-0.62321	-0.00034793	-1.0067	-0.00056202	-1.6299	-0.00090995	558.293665602351	15.429	0.071051	15.429	15.402	15.473	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	517.049252012408	0	11.1041141506282						126	9	3	NaN	NaN	NaN	0.00096999	1	23671	41.317	40.06	1	28567			7502	2099	6344	6515	7502	7502		
GLASWDEGHVLTFLK	15	Unmodified	_GLASWDEGHVLTFLK_			0	0	0	Q6ZRP7	Q6ZRP7	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.938305	1671.86206	1.8073	0.0015126	1.1473	0.00096022	2.9546	0.0024728	836.939568501031	15.429	0.062198	15.429	15.402	15.464	0	237	25	1.16593139812432	0.0159524375137323	1.16593139812432	470.844381050786	0	6.44215910085961						165	8	4	NaN	NaN	NaN	0.00026628	1	23674	46.358	40.97	1	39462			7503	2099	6344	6515	7503	7503		
GLATFCLDK	9	Unmodified	_GLATFCLDK_			0	0	0	O15173;O00264	O15173;O00264	O00264	PGRMC2;PGRMC1	Membrane-associated progesterone receptor component 2;Membrane-associated progesterone receptor component 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.760235	1023.50592	0.084549	4.3353E-05	-0.64562	-0.00033105	-0.56107	-0.0002877	512.759983187541	9.9928	0.15071	9.9928	9.9041	10.055	0	708	43	0.849494101904619	0.0285211140004684	0.849494101904619	344.836183692757	0	11.5776108210012						450	18	3	NaN	NaN	NaN	0.028657	1	4830	36.211	22.563	1	219670			7504	152;68	6345	6516	7504	7504		
GLATSLQNDLQEVPK	15	Unmodified	_GLATSLQNDLQEVPK_			0	0	0	Q8N0X7	Q8N0X7	Q8N0X7	SPG20	Spartin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.930677	1611.8468	2.1339	0.0017219	0.36742	0.00029648	2.5013	0.0020184	806.931025488913	13.318	0.15078	13.318	13.265	13.416	0	282	37	1.13599383354359	0.0239780653182871	1.13599383354359	458.894918095997	0	9.68615497322912						275	18	2	NaN	NaN	NaN	3.8017E-10	1	21957	126.21	89.698	1	161400			7505	2235	6346	6517	7505	7505		
GLCAIAQAESLR	12	Unmodified	_GLCAIAQAESLR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.837536	1287.66052	1.4909	0.00096141	0.23292	0.00015019	1.7239	0.0011116	644.838112240846	10.268	0.21281	10.268	10.188	10.401	0	501	91	0.98941132619024	0.0605016247799726	0.98941132619024	400.537765944636	0	24.4925290260235						1027	25	5	NaN	NaN	NaN	2.5725E-11	1	11997	146.88	124.84	1	654190			7506	819	6347	6518	7506	7506		
GLCGAIHSSIAK	12	Unmodified	_GLCGAIHSSIAK_			0	0	0	P36542	P36542	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.321522	1212.62849	1.5088	0.00091635	0.9855	0.00059852	2.4943	0.0015149	607.32013041085	5.3189	0.23056	5.3189	5.2657	5.4962	0	540	76	0.963152256458504	0.0505751639210029	0.963152256458504	390.163393719709	0	20.4874955761465						928	27	5	NaN	NaN	NaN	0.0041099	1	9807	81.335	66.573	1	312050			7507	985	6348	6519	7507	7507		
GLCGTVLIHK	10	Unmodified	_GLCGTVLIHK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.310426	1096.6063	0.95268	0.00052332	2.3054	0.0012664	3.2581	0.0017897	549.311635436815	6.3565	0.16847	6.3565	6.3033	6.4717	0	600	37	0.922661313351899	0.0243282375267269	0.922661313351899	374.205554270551	0	9.8668508979116						213	20	3	NaN	NaN	NaN	0.0090446	1	6631	28.096	16.029	1	54566			7508	1932	6349	6520	7508	7508		
GLCLYYEDCIEK	12	Unmodified	_GLCLYYEDCIEK_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.84691	1561.67927	1.1625	0.00090888	1.666	0.0013026	2.8285	0.0022114	781.847414013738	11.793	0.088697	11.793	11.775	11.864	0	411	31	1.04982941439551	0.0200921384005985	1.04982941439551	424.204076629051	0	8.11862089293487						191	11	3	NaN	NaN	NaN	0.00060384	1	20381	53.028	48.5	1	50314			7509	2658	6350	6521	7509	7509		
GLCNFLMSDEEYDDR	15	Unmodified	_GLCNFLMSDEEYDDR_			0	0	0	Q9UKN8	Q9UKN8	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.379833	1862.74511	1.7066	0.0015912	0.12881	0.0001201	1.8354	0.0017113	932.380427144036	14.294	0.08867	14.294	14.258	14.347	0	234	28	1.16792504164217	0.0179427933549365	1.16792504164217	471.251975953063	0	7.23982834612593						236	11	4	NaN	NaN	NaN	4.4463E-08	1	28742	104.49	97.284	1	54256			7510	3267	6351	6522	7510	7510		
GLDEDETNFLDEVSR	15	Unmodified	_GLDEDETNFLDEVSR_			0	0	0	Q9GZU8	Q9GZU8	Q9GZU8	FAM192A	Protein FAM192A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.891945	1737.76934	1.8433	0.0016035	0.12229	0.00010638	1.9656	0.0017098	869.892331559645	14.409	0.07981	14.409	14.373	14.453	0	366	37	1.07994477139643	0.0240640669775463	1.07994477139643	435.98394746371	0	9.7148920859496						252	10	3	NaN	NaN	NaN	3.2289E-08	1	25528	126.17	123.63	1	68759			7511	2834	6352	6523	7511	7511		
GLDFALLQK	9	Unmodified	_GLDFALLQK_			0	0	0	Q13123	Q13123	Q13123	IK	Protein Red	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.792392	1003.57023	-0.0092314	-4.6415E-06	-1.6388	-0.00082396	-1.648	-0.0008286	502.791626008142	13.859	0.10639	13.859	13.815	13.921	0	690	28	0.86171403876517	0.0183260879062385	0.86171403876517	349.888826995651	0	7.44109195449738						176	13	2	NaN	NaN	NaN	0.012039	1	4373	58.286	45.459	1	46971			7512	1629	6353	6524	7512	7512		
GLDFLHANCIVHR	13	Unmodified	_GLDFLHANCIVHR_			0	0	0	P11802	P11802	P11802	CDK4	Cyclin-dependent kinase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.933148	1550.77762	-1.4929	-0.00077325	-1.2145	-0.00062903	-2.7075	-0.0014023	517.932651763925	10.534	0.062084	10.534	10.507	10.569	0	789	25	0.794378096728713	0.0163590783051756	0.794378096728713	481.502966062471	0	9.91586343886854						144	8	4	NaN	NaN	NaN	0.0032285	1	20077	46.033	41.505	1	35413			7513	659	6354	6525	7513	7513		
GLDGIPFTVDATSQIHCIEDFHR	23	Unmodified	_GLDGIPFTVDATSQIHCIEDFHR_			0	0	0	Q15654	Q15654	Q15654	TRIP6	Thyroid receptor-interacting protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	657.818235	2627.24384	-0.25905	-0.00017041	-0.17303	-0.00011382	-0.43208	-0.00028423	658.31952644714	15.854	0.079822	15.854	15.819	15.899	-1.7764E-15	609	22	0.916577990479294	0.0141983560762999	0.916577990479294	738.073132404076	0	11.4332061789344						194	10	4	NaN	NaN	NaN	0.0060896	1	37346	18.361	17.52	1	49921			7514	1862	6355	6526	7514	7514		
GLDGIPFTVDATSQIHCIEDFHR	23	Unmodified	_GLDGIPFTVDATSQIHCIEDFHR_			0	0	0	Q15654	Q15654	Q15654	TRIP6	Thyroid receptor-interacting protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	876.755222	2627.24384	2.052	0.0017991	1.0824	0.00094902	3.1345	0.0027482	877.425947008975	15.845	0.21285	15.845	15.757	15.97	0	345	52	1.09397730668811	0.034050864491993	1.09397730668811	660.694089226216	0	20.5645992520724						486	25	5	NaN	NaN	NaN	3.9788E-05	1	37347	52.149	51.634	1	161290			7515	1862	6355	6526	7515	7515		
GLDIPEVDLVIQSSPPK	17	Unmodified	_GLDIPEVDLVIQSSPPK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.996017	1805.97748	0.38331	0.00034651	1.5992	0.0014457	1.9825	0.0017922	904.49880526674	17.016	0.23058	17.016	16.91	17.14	0	141	94	1.2295923935727	0.0616165918961677	1.2295923935727	496.249704926929	0	24.8677656977295						1192	27	4	NaN	NaN	NaN	0.00027416	1	27385	53.051	48.497	1	260090			7516	3011	6356	6527	7516	7516		
GLDISHISQR	10	Unmodified	_GLDISHISQR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.304187	1124.59382	1.6947	0.00095465	1.0139	0.00057115	2.7087	0.0015258	563.304620528819	6.4185	0.20391	6.4185	6.3742	6.5781	0	582	34	0.934820374997243	0.0222838959578864	0.934820374997243	379.019821249322	0	9.03493172441978						414	24	4	NaN	NaN	NaN	0.00016508	1	7394	92.732	73.245	1	178920			7517	2239	6357	6528	7517	7517		
GLDPVEILQER	11	Unmodified	_GLDPVEILQER_			0	0	0	P51532	P51532	P51532	SMARCA4	Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.845884	1267.67722	0.96472	0.00061245	-0.48166	-0.00030578	0.48306	0.00030667	634.845145356419	14.338	0.19505	14.338	14.24	14.435	0	549	43	0.957085760909907	0.0283122781138182	0.957085760909907	387.516408633166	0	11.4634161148313						307	23	3	NaN	NaN	NaN	0.0041661	1	11445	68.49	46.487	1	85524			7518	1187	6358	6529	7518	7518		
GLDPYNVLAPK	11	Unmodified	_GLDPYNVLAPK_			0	0	0	P10606	P10606	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.826963	1185.63937	0.3237	0.00019222	1.5256	0.00090596	1.8493	0.0010982	593.827328244977	12.024	0.28378	12.024	11.917	12.201	0	567	52	0.944945209309785	0.0344244475580081	0.944945209309785	382.885933761859	0	13.9485724861356						484	33	2	NaN	NaN	NaN	0.016639	1	9034	34.953	26.479	1	246090			7519	629	6359	6530	7519	7519		
GLDSLFSYLQDK	12	Unmodified	_GLDSLFSYLQDK_			0	0	0	Q8N8U2	Q8N8U2	Q8N8U2	CDYL2	Chromodomain Y-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.351	1384.68745	0.15826	0.00010973	0.24883	0.00017253	0.40708	0.00028225	693.350841190018	18.089	0.062042	18.089	18.071	18.133	0	468	31	1.01159370163332	0.0201504747888646	1.01159370163332	409.213035138569	0	8.15133282712293						142	8	3	NaN	NaN	NaN	0.0007048	1	14976	63.212	38.391	1	30282			7520	2274	6360	6531	7520	7520		
GLDVDSLVIEHIQVNK	16	Unmodified	_GLDVDSLVIEHIQVNK_			0	0	0	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.659748	1777.95741	-0.023872	-1.4172E-05	-1.1801	-0.00070055	-1.2039	-0.00071472	593.659154507331	14.613	0.43451	14.613	14.533	14.967	0	687	88	0.863749705078866	0.0590507818006564	0.863749705078866	522.960058622852	0	35.7524872432539						1760	50	6	NaN	NaN	NaN	4.9448E-05	1	26630	119.55	89.201	1	1171200			7521	756	6361	6532	7521	7521		
GLDVDSLVIEHIQVNK	16	Unmodified	_GLDVDSLVIEHIQVNK_			0	0	0	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.985983	1777.95741	2.3057	0.002052	0.17986	0.00016008	2.4855	0.0022121	889.986353904641	14.613	0.35469	14.613	14.551	14.905	0	204	61	1.18784641916898	0.039826354451779	1.18784641916898	479.459072189017	0	16.0754005281927						1291	41	6	NaN	NaN	NaN	2.0925E-26	1	26632	209.43	179.36	1	1086100			7522	756	6361	6532	7522	7522		
GLDVPQVSLIINYDLPNNR	19	Unmodified	_GLDVPQVSLIINYDLPNNR_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.57349	2139.13242	1.0433	0.0011169	-0.54355	-0.00058191	0.49972	0.00053498	1071.07472215326	18.319	0.15959	18.319	18.248	18.408	0	123	46	1.24149774378079	0.0297613419787592	1.24149774378079	500.459458506189	0	11.9970778567417						606	19	5	NaN	NaN	NaN	0.0005732	1	33871	69.224	65.783	1	154410			7523	1008	6362	6533	7523	7523		
GLDYEGGGCR	10	Unmodified	_GLDYEGGGCR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.22983	1082.44511	1.8158	0.00098461	4.769	0.0025859	6.5849	0.0035705	542.233544997615	3.8914	0.20393	3.8914	3.8558	4.0598	0	690	22	0.86171403876517	0.0142496650202144	0.86171403876517	349.543770807036	0	5.78020250318826						174	24	3	NaN	NaN	NaN	0.026309	1	6259	34.781	24.702	1	47709			7524	268	6363	6534	7524	7524		
GLDYLHSEK	9	Unmodified	_GLDYLHSEK_			0	0	0	Q9P289;Q9Y6E0	Q9P289;Q9Y6E0	Q9P289	STK26;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.266739	1060.51892	1.5778	0.00083825	-0.34716	-0.00018443	1.2307	0.00065381	531.26610139506	4.8312	0.21282	4.8312	4.7514	4.9642	0	612	64	0.914549654013882	0.0426246249865688	0.914549654013882	371.072289628293	0	17.2946511093135						289	25	3	NaN	NaN	NaN	0.0011738	1	5736	81.642	43.92	1	93839			7525	3155;3462	6364	6535	7525	7525		
GLECLVSILK	10	Unmodified	_GLECLVSILK_			0	0	0	Q9Y6D5;Q9Y6D6	Q9Y6D5;Q9Y6D6	Q9Y6D5	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.325742	1130.63693	-0.0029697	-1.6818E-06	-2.1382	-0.0012109	-2.1411	-0.0012126	566.324718873945	16.608	0.133	16.608	16.537	16.67	0	615	40	0.912521036363781	0.0263756909350701	0.912521036363781	369.954695445756	0	10.6932446685703						295	16	3	NaN	NaN	NaN	0.0076033	1	7558	41.796	37.256	1	76862			7526	3459;3460	6365	6536	7526	7526		
GLEEIPVFDISEK	13	Unmodified	_GLEEIPVFDISEK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.385039	1474.75553	0.30449	0.00022483	-1.5156	-0.0011191	-1.2112	-0.0008943	738.383626823195	16.005	0.13298	16.005	15.952	16.085	0	498	31	0.991429299781895	0.0201783433575858	0.991429299781895	400.813826666833	0	8.15767601253106						288	16	3	NaN	NaN	NaN	0.00044952	1	17738	60.547	44.668	1	79492			7527	2005	6366	6537	7527	7527		
GLEEPEMDPK	10	Unmodified	_GLEEPEMDPK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.763171	1143.51179	2.0305	0.001163	0.19241	0.00011021	2.2229	0.0012732	572.763341478164	6.0727	0.17734	6.0727	6.0017	6.1791	0	576	34	0.938871150116794	0.022280809347793	0.938871150116794	380.585929269007	0	9.03187037906162						433	21	4	NaN	NaN	NaN	0.034028	1	7874	41.796	22.54	1	143160			7528	1919	6367	6538	7528	7528		
GLEFLSVPSTYYK	13	Unmodified	_GLEFLSVPSTYYK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.390125	1502.7657	1.2358	0.0009298	5.3597	0.0040326	6.5955	0.0049624	752.395945894944	15.304	0.36361	15.304	15.26	15.624	0	414	100	1.04781950764076	0.0663727924075241	1.04781950764076	423.537762043953	0	26.8284601993957						790	42	3	NaN	NaN	NaN	0.00031574	1	18604	69.276	56.101	1	255640			7529	939	6368	6539	7529	7529		
GLEHVTVDDLVAEITPK	17	Unmodified	_GLEHVTVDDLVAEITPK_			0	0	0	Q9NPA8	Q9NPA8	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.663158	1834.96764	-0.17585	-0.00010774	-1.8606	-0.0011399	-2.0365	-0.0012477	612.996339551366	16.519	0.27488	16.519	16.395	16.67	0	618	37	0.910492137470517	0.0243451033539596	0.910492137470517	551.128009401992	0	14.7362813998908						620	32	4	NaN	NaN	NaN	0.0013651	1	28107	68.108	54.33	1	205850			7530	2984	6369	6540	7530	7530		
GLEISGTFTHR	11	Unmodified	_GLEISGTFTHR_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.317294	1216.62004	1.2242	0.00074592	1.1776	0.00071755	2.4018	0.0014635	609.318320527669	7.6068	0.15965	7.6068	7.5536	7.7132	0	537	28	0.965173861991602	0.0181919339867516	0.965173861991602	390.967890155177	0	7.36909931850641						299	19	4	NaN	NaN	NaN	4.3108E-05	1	9925	94.804	46.646	1	112740			7531	1423	6370	6541	7531	7531		
GLEMDPIDCTPPEYILPGSR	20	Unmodified	_GLEMDPIDCTPPEYILPGSR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1130.53485	2259.05515	1.2894	0.0014577	0.14469	0.00016358	1.4341	0.0016212	1131.03698473677	16.147	0.079808	16.147	16.111	16.191	0	138	43	1.23157729878518	0.0277867742236872	1.23157729878518	496.290375775733	0	11.197274125361						308	10	5	NaN	NaN	NaN	2.9585E-05	1	35259	65.421	59.805	1	67978			7532	307	6371	6542	7532	7532		
GLEPSQSTAAK	11	Unmodified	_GLEPSQSTAAK_			0	0	0	Q9GZR7	Q9GZR7	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.782753	1087.55095	0.97836	0.000533	-5.0651	-0.0027594	-4.0867	-0.0022264	544.779965449009	2.7562	0.11526	2.7562	2.7208	2.836	0	711	25	0.847456455381371	0.0163000411099919	0.847456455381371	343.740115915489	0	6.61152320570199						101	14	2	NaN	NaN	NaN	0.071954	1	6399	24.821	17.174	1	22019			7533	2829	6372	6543	7533	7533		
GLESTTLADK	10	Unmodified	_GLESTTLADK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.771854	1033.52915	1.6908	0.00087543	-1.6471	-0.00085283	0.043668	2.261E-05	517.771145887049	5.0351	0.1862	5.0351	4.9731	5.1593	0	693	40	0.85967808974117	0.0264710186728029	0.85967808974117	348.925276937383	0	10.7440303893324						404	22	3	NaN	NaN	NaN	0.013866	1	5091	49.16	33.578	1	262530			7534	791	6373	6544	7534	7534		
GLETFSQLVWK	11	Unmodified	_GLETFSQLVWK_			0	0	0	P06865	P06865	P06865	HEXA	Beta-hexosaminidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.353345	1306.69214	0.59764	0.00039107	-2.195	-0.0014363	-1.5974	-0.0010453	654.35170854986	16.067	0.14188	16.067	15.996	16.138	0	531	31	0.969216233931596	0.0202118620218336	0.969216233931596	392.30165498198	0	8.18098855945533						196	17	2	NaN	NaN	NaN	0.0032303	1	12566	57.032	43.759	1	51513			7535	549	6374	6545	7535	7535		
GLEVTAYSPLGSSDR	15	Unmodified	_GLEVTAYSPLGSSDR_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.386102	1550.75765	1.7882	0.0013883	-3.8392	-0.0029807	-2.051	-0.0015923	776.382135352466	11.447	0.30162	11.447	11.323	11.624	0	429	43	1.03776581230406	0.0281561811759454	1.03776581230406	419.355516402684	0	11.3777595648011						562	35	4	NaN	NaN	NaN	0.00015887	1	20071	83.214	70.039	1	183830			7536	698	6375	6546	7536	7536		
GLEVTDDSPK	10	Unmodified	_GLEVTDDSPK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.761486	1059.50842	1.559	0.00082748	2.6081	0.0013843	4.1672	0.0022118	530.763187564887	4.6893	0.20395	4.6893	4.6184	4.8223	0	642	31	0.894250814548268	0.0203101032426732	0.894250814548268	362.840596237926	0	8.24078642181394						441	24	4	NaN	NaN	NaN	0.00095772	1	5704	69.716	44.462	1	302940			7537	1136	6376	6547	7537	7537		
GLEYLYLNVHDEDRDDQTR	19	Unmodified	_GLEYLYLNVHDEDRDDQTR_			0	0	1	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	588.527918	2350.08257	0.16962	9.9828E-05	0.21578	0.00012699	0.3854	0.00022682	588.778996130671	10.543	0.070943	10.543	10.516	10.587	0	702	46	0.853568545818287	0.0305434851459953	0.853568545818287	687.760963054216	0	24.6103454279744						241	9	4	NaN	NaN	NaN	0.002849	1	36040	21.376	20.857	1	50427			7538	3465	6377	6548	7538	7538		
GLFDDEDEESDLFTEAPQDR	20	Unmodified	_GLFDDEDEESDLFTEAPQDR_			0	0	0	Q641Q2	Q641Q2	Q641Q2	FAM21A	WASH complex subunit FAM21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1164.49295	2326.97134	0.96626	0.0011252	2.0491	0.0023861	3.0153	0.0035114	1164.99456015318	15.757	0.062091	15.757	15.73	15.792	0	117	37	1.24546401832526	0.0237878690263535	1.24546401832526	501.796758114739	0	9.58411915900484						163	8	3	NaN	NaN	NaN	0.017241	1	35865	13.525	11.423	1	29166			7539	2016	6378	6549	7539	7539		
GLFDEEMNEILTDPSDDTK	19	Unmodified	_GLFDEEMNEILTDPSDDTK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.98063	2167.94671	0.68353	0.00074161	1.4399	0.0015623	2.1234	0.0023039	1085.48399688114	17.956	0.14184	17.956	17.876	18.018	0	159	43	1.21767724410157	0.0278134637281793	1.21767724410157	490.815094512644	0	11.2109082226814						398	17	5	NaN	NaN	NaN	3.5945E-05	1	34276	70.552	68.163	1	119000			7540	1816	6379	6550	7540	7540		
GLFEVNPWK	9	Unmodified	_GLFEVNPWK_			0	0	0	Q9HDC9	Q9HDC9	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.290017	1088.56548	0.052525	2.8641E-05	-0.91928	-0.00050127	-0.86675	-0.00047263	545.290087750878	14.152	0.17735	14.152	14.054	14.232	0	651	55	0.888155670855968	0.0365937172301484	0.888155670855968	360.244064425414	0	14.8427464463724						430	21	4	NaN	NaN	NaN	0.063594	1	6436	29.102	23.793	1	216480			7541	2973	6380	6551	7541	7541		
GLFIIDDK	8	Unmodified	_GLFIIDDK_			0	0	0	Q06830;Q13162	Q06830;Q13162	Q06830	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.758018	919.501483	-1.0629	-0.00048976	-0.64483	-0.00029711	-1.7078	-0.00078687	460.758141214971	12.52	0.26601	12.52	12.431	12.697	0	741	58	0.827064408645228	0.0387907136666801	0.827064408645228	336.234658796668	0	15.769971767447						904	31	4	NaN	NaN	NaN	0.0035605	1	2697	78.178	51.955	1	672890			7542	1564;1637	6381	6552	7542	7542		
GLFIIDPNGVIK	12	Unmodified	_GLFIIDPNGVIK_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.379363	1284.74417	0.82281	0.00052938	-1.7234	-0.0011088	-0.90058	-0.00057941	643.378608555181	16.51	0.33694	16.51	16.386	16.723	0	534	70	0.967195187796614	0.0464648012234402	0.967195187796614	391.5535738152	0	18.8105350452557						852	39	4	NaN	NaN	NaN	0.010646	1	11908	41.796	20.708	1	537320			7543	898	6382	6553	7543	7543		
GLFTLFAGHLVK	12	Unmodified	_GLFTLFAGHLVK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.882073	1301.74959	0.95807	0.00062455	-0.54944	-0.00035817	0.40863	0.00026638	651.881930813981	15.987	0.11525	15.987	15.952	16.067	1.7764E-15	432	31	1.035754240522	0.0201171086492766	1.035754240522	419.250340553126	0	8.142959325856						236	14	4	NaN	NaN	NaN	0.039335	1	12411	41.796	31.094	1	83194			7544	2900	6383	6554	7544	7544		
GLFYFDNSFRPVPLEQTYVGITEK	24	Unmodified	_GLFYFDNSFRPVPLEQTYVGITEK_			0	0	1	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	940.812954	2819.41703	1.1531	0.0010848	0.16855	0.00015857	1.3216	0.0012434	941.147447786637	18.311	0.070941	18.311	18.275	18.346	0	405	37	1.05384839605172	0.0241172212531353	1.05384839605172	636.230355490131	0	14.5600717416316						267	9	5	NaN	NaN	NaN	5.4179E-07	1	37935	50.131	47.945	1	50608			7545	350	6384	6555	7545	7545		
GLGAFVIDSDHLGHR	15	Unmodified	_GLGAFVIDSDHLGHR_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.942589	1592.80594	-0.50358	-0.00026788	-0.367	-0.00019522	-0.87058	-0.0004631	531.942498605221	10.117	0.10641	10.117	10.073	10.179	0	747	28	0.822982596624503	0.0183694328474171	0.822982596624503	498.72489883609	0	11.131819282789						268	13	4	NaN	NaN	NaN	0.00015954	1	21358	61.577	52.771	1	95286			7546	1623	6385	6556	7546	7546		
GLGAFVIDSDHLGHR	15	Unmodified	_GLGAFVIDSDHLGHR_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.410246	1592.80594	2.2778	0.0018163	0.02238	1.7846E-05	2.3002	0.0018342	797.409925657406	10.117	0.070931	10.117	10.081	10.152	0	288	31	1.13199748998575	0.0199844694124975	1.13199748998575	457.327133224971	0	8.07372824259051						198	9	3	NaN	NaN	NaN	3.5922E-08	1	21359	96.946	93.657	1	54972			7547	1623	6385	6556	7547	7547		
GLGAGAGAGEESPATSLPR	19	Unmodified	_GLGAGAGAGEESPATSLPR_			0	0	0	O15173	O15173	O15173	PGRMC2	Membrane-associated progesterone receptor component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.42629	1696.83803	2.4273	0.0020618	-2.389	-0.0020293	0.038305	3.2537E-05	849.423809322627	7.9083	0.17736	7.9083	7.8374	8.0148	8.8818E-16	366	64	1.07994477139643	0.0421034272006935	1.07994477139643	436.067177230489	0	17.0007977606072						674	21	4	NaN	NaN	NaN	4.6686E-05	1	24403	91.993	75.862	1	266330			7548	152	6386	6557	7548	7548		
GLGAQEQGATDHIK	14	Unmodified	_GLGAQEQGATDHIK_			0	0	0	Q96BK5	Q96BK5	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.860054	1423.70556	3.2435	0.0023121	-2.4287	-0.0017313	0.81474	0.00058079	712.85814225504	3.8381	0.062066	3.8381	3.8115	3.8736	0	459	25	1.01763759082241	0.0161136996889994	1.01763759082241	411.546382382003	0	6.51659772949074						98	8	3	NaN	NaN	NaN	0.0014798	1	16197	71.896	54.426	1	17349			7549	2483	6387	6558	7549	7549		
GLGATTHPTAAVK	13	Unmodified	_GLGATTHPTAAVK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.340769	1222.66699	1.7938	0.0010984	0.083999	5.1436E-05	1.8778	0.0011498	612.340642040456	3.3769	0.1064	3.3769	3.3503	3.4567	0	546	22	0.959108205975751	0.0141571162745744	0.959108205975751	388.489295137966	0	5.73437708949666						127	13	3	NaN	NaN	NaN	0.0021091	1	10100	87.942	75.346	1	21517			7550	1223	6388	6559	7550	7550		
GLGHQVATDALVAMEK	16	Unmodified	_GLGHQVATDALVAMEK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.427247	1638.83994	2.4367	0.0019992	-1.1426	-0.00093742	1.2941	0.0010617	820.427684504345	10.879	0.10642	10.879	10.844	10.95	0	330	31	1.10399226369747	0.0200230200251346	1.10399226369747	445.905010886723	0	8.08734377575246						198	13	3	NaN	NaN	NaN	0.00020595	1	22734	97.949	79.138	1	46786			7551	3395	6389	6560	7551	7551		
GLGLDDALEPR	11	Unmodified	_GLGLDDALEPR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.303852	1154.59315	0.92763	0.00053645	0.95276	0.00055098	1.8804	0.0010874	578.304071221735	11.19	0.27492	11.19	11.075	11.35	0	579	58	0.936845902828289	0.038485045404303	0.936845902828289	379.721531080403	0	15.5987236753697						1003	32	4	NaN	NaN	NaN	0.029844	1	8194	57.032	44.966	1	421620			7552	3325	6390	6561	7552	7552		
GLGLDESGLAK	11	Unmodified	_GLGLDESGLAK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.287671	1058.56079	-0.17921	-9.5033E-05	-3.7204	-0.0019729	-3.8996	-0.0020679	530.284659771681	9.3632	0.13303	9.3632	9.31	9.443	0	645	28	0.892219381832517	0.0182854326605286	0.892219381832517	362.020533991741	0	7.41936594387636						166	16	2	NaN	NaN	NaN	0.04579	1	5685	29.31	9.8223	1	46928			7553	3331	6391	6562	7553	7553		
GLGLDESGLAK	11	Unmodified	_GLGLDESGLAK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.287671	1058.56079	0.67048	0.00035555	0.69383	0.00036793	1.3643	0.00072348	530.288201111824	8.5205	0.20394	8.5205	8.4495	8.6534	0	654	52	0.886123392477847	0.0345391592225333	0.886123392477847	359.547048673227	0	14.0143606043297						540	24	4	NaN	NaN	NaN	0.00083637	1	5689	90.761	54.192	1	276820			7554	3331	6391	6562	7554	7554		
GLGLGIVAGSLLVK	14	Unmodified	_GLGLGIVAGSLLVK_			0	0	0	O75352	O75352	O75352	MPDU1	Mannose-P-dolichol utilization defect 1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.916113	1295.81767	0.84022	0.00054523	1.0511	0.00068205	1.8913	0.0012273	648.916650167198	17.415	0.11524	17.415	17.371	17.486	0	396	31	1.05987478976334	0.0200865957702232	1.05987478976334	429.034419099579	0	8.13099908706198						237	14	3	NaN	NaN	NaN	0.025803	1	12242	40.533	38.734	1	67886			7555	323	6392	6563	7555	7555		
GLGLSPDLVVCR	12	Unmodified	_GLGLSPDLVVCR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.35028	1284.68601	1.1562	0.00074382	1.6674	0.0010727	2.8236	0.0018166	643.853254483023	13.026	0.22168	13.026	12.937	13.159	0	534	79	0.967195187796614	0.0525290699698617	0.967195187796614	391.553748241305	0	21.2655671759341						1069	26	5	NaN	NaN	NaN	0.00062471	1	11902	72.365	44.269	1	549480			7556	741	6393	6564	7556	7556		
GLGPLAEAAAAGDGAAAAGAAR	22	Unmodified	_GLGPLAEAAAAGDGAAAAGAAR_			0	0	0	O43815	O43815	O43815	STRN	Striatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.966113	1807.91767	1.5479	0.0014008	-9.6392	-0.0087232	-8.0913	-0.0073223	905.458174722454	11.704	0.3193	11.704	11.518	11.837	0	285	55	1.13399579921816	0.0359621578176168	1.13399579921816	457.664287591793	0	14.5138062673696						469	37	3	NaN	NaN	NaN	8.1165E-06	1	27430	67.927	48.921	1	127730			7557	234	6394	6565	7557	7557		
GLGSTVQEIDLTGVK	15	Unmodified	_GLGSTVQEIDLTGVK_			0	0	0	Q96CN7	Q96CN7	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.914495	1515.81444	1.6384	0.0012434	-0.98499	-0.00074753	0.65342	0.00049589	758.91400368643	12.449	0.20392	12.449	12.343	12.547	0	420	64	1.04379886199097	0.0422022405681552	1.04379886199097	421.879460034395	0	17.0571736677072						477	24	4	NaN	NaN	NaN	4.9172E-06	1	19016	79.795	65.997	1	173990			7558	2493	6395	6566	7558	7558		
GLGTDDNTLIR	11	Unmodified	_GLGTDDNTLIR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.806759	1173.59897	1.6726	0.00098316	1.4063	0.00082663	3.0789	0.0018098	587.806956148053	7.8285	0.19509	7.8285	7.7576	7.9527	0	591	34	0.928742107665821	0.0222900711025618	0.928742107665821	376.364942811685	0	9.0328642004489						281	23	3	NaN	NaN	NaN	0.0013135	1	8699	63.397	39.822	1	140040			7559	604	6396	6567	7559	7559		
GLGTDEDAIISVLAYR	16	Unmodified	_GLGTDEDAIISVLAYR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.964948	1691.87302	-0.83168	-0.00046987	-0.14781	-8.3505E-05	-0.97948	-0.00055337	565.29907299923	18.098	0.079797	18.098	18.053	18.133	0	657	22	0.884090832094921	0.0142298979470937	0.884090832094921	535.486117244571	0	8.61892525502128						141	10	3	NaN	NaN	NaN	0.0073018	1	24256	64.266	63.975	1	36381			7560	604	6397	6568	7560	7560		
GLGTDEDAIISVLAYR	16	Unmodified	_GLGTDEDAIISVLAYR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.943784	1691.87302	1.3069	0.0011069	-0.30451	-0.00025791	1.0024	0.00084899	846.943786772243	18.089	0.16847	18.089	18.036	18.204	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	440.934686212561	0	9.71162272737894						391	20	4	NaN	NaN	NaN	1.8197E-12	1	24257	104.04	95.667	1	106060			7561	604	6397	6568	7561	7561		
GLGTDEDSLIEIICSR	16	Unmodified	_GLGTDEDSLIEIICSR_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.435466	1776.85638	2.4006	0.0021352	0.40694	0.00036195	2.8076	0.0024972	889.436280051809	17.61	0.28375	17.61	17.521	17.805	0	324	103	1.1079963157843	0.0680502344542306	1.1079963157843	447.230739077526	0	27.4677417386732						1926	33	5	NaN	NaN	NaN	2.7705E-44	1	26595	225.1	196.77	1	2392200			7562	558	6398	6569	7562	7562		
GLGTDEDTIIDIITHR	16	Unmodified	_GLGTDEDTIIDIITHR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.307374	1767.90029	-1.009	-0.00059564	0.7927	0.00046793	-0.21634	-0.00012771	590.308058015542	17.388	0.21284	17.388	17.326	17.539	0	720	67	0.841341816837976	0.0448189089977539	0.841341816837976	509.415520646229	0	27.1369464882828						807	25	5	NaN	NaN	NaN	8.3838E-05	1	26346	117.21	114.73	1	560570			7563	573	6399	6570	7563	7563		
GLGTDEDTIIDIITHR	16	Unmodified	_GLGTDEDTIIDIITHR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.957423	1767.90029	1.4007	0.0012395	1.1244	0.000995	2.525	0.0022346	884.958326411963	17.388	0.14187	17.388	17.335	17.477	0	234	46	1.16792504164217	0.0299046606743485	1.16792504164217	471.438810453687	0	12.0711665155437						477	17	4	NaN	NaN	NaN	1.5821E-12	1	26350	100.69	95.305	1	155540			7564	573	6399	6570	7564	7564		
GLGTDEDTLIEILASR	16	Unmodified	_GLGTDEDTLIEILASR_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.946524	1701.87849	1.8816	0.001603	0.62326	0.00053098	2.5049	0.002134	851.947469738215	18.905	0.35466	18.905	18.843	19.197	0	342	85	1.09598084995137	0.0561263229002051	1.09598084995137	442.531700753652	0	22.6625101443867						1498	41	5	NaN	NaN	NaN	3.1528E-33	1	24560	207.12	170.61	1	1634900			7565	506	6400	6571	7565	7565		
GLGTDEESILTLLTSR	16	Unmodified	_GLGTDEESILTLLTSR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.971991	1703.89414	-0.7018	-0.0003993	2.8499	0.0016215	2.1481	0.0012222	569.309104353557	19.383	0.062097	19.383	19.348	19.41	0	660	19	0.882057989648486	0.0121979015150934	0.882057989648486	534.224240174869	0	7.3877395195135						81	8	3	NaN	NaN	NaN	0.0028723	1	24611	66.953	66.072	1	18320			7566	591	6401	6572	7566	7566		
GLGTDEESILTLLTSR	16	Unmodified	_GLGTDEESILTLLTSR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.954349	1703.89414	1.9965	0.0017029	3.6173	0.0030854	5.6138	0.0047883	852.957897617797	19.375	0.31922	19.375	19.215	19.534	0	345	79	1.09397730668811	0.052117293156047	1.09397730668811	441.718484604935	0	21.0435551211699						1064	37	6	NaN	NaN	NaN	3.7766E-56	1	24612	261.13	212.43	1	836380			7567	591	6401	6572	7567	7567		
GLGTETAEFAELK	13	Unmodified	_GLGTETAEFAELK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.348457	1364.68236	1.3323	0.00091045	-1.5184	-0.0010376	-0.18604	-0.00012713	683.348089879202	11.287	0.15079	11.287	11.234	11.385	0	504	46	0.987393073566096	0.0302696119755409	0.987393073566096	399.481209883189	0	12.2465323470535						403	18	4	NaN	NaN	NaN	0.00052755	1	14336	75.474	64.687	1	104810			7568	914	6402	6573	7568	7568		
GLGTGTLYIAESR	13	Unmodified	_GLGTGTLYIAESR_			0	0	0	P54105	P54105	P54105	CLNS1A	Methylosome subunit pICln	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.356616	1336.69868	1.704	0.0011406	1.5907	0.0010647	3.2947	0.0022053	669.357742156568	10.365	0.24831	10.365	10.294	10.543	0	486	49	0.999498404980629	0.0322585904613818	0.999498404980629	404.463674473348	0	13.0539758406061						675	29	5	NaN	NaN	NaN	0.00027592	1	13500	96.946	82.951	1	369680			7569	1249	6403	6574	7569	7569		
GLGWVQFSSEEGLR	14	Unmodified	_GLGWVQFSSEEGLR_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.891355	1563.76816	1.5136	0.001185	-2.7891	-0.0021836	-1.2755	-0.00099858	782.888610476478	14.595	0.19507	14.595	14.551	14.746	0	429	49	1.03776581230406	0.0321829369854028	1.03776581230406	419.324636214963	0	13.003992021833						431	23	4	NaN	NaN	NaN	8.1732E-08	1	20462	99.589	85.791	1	160650			7570	2831	6404	6575	7570	7570		
GLHQSIEEFR	10	Unmodified	_GLHQSIEEFR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	405.875405	1214.60439	-1.0741	-0.00043596	-0.79795	-0.00032387	-1.8721	-0.00075982	405.87505059201	6.0017	0.088686	6.0017	5.9751	6.0638	0	858	25	0.747263789720611	0.0164138593220675	0.747263789720611	454.051156444002	0	9.97336136102672						148	11	3	NaN	NaN	NaN	0.029311	1	9854	40.502	40.141	1	36071			7571	1816	6405	6576	7571	7571		
GLHVVEIR	8	Unmodified	_GLHVVEIR_			0	0	0	P82675	P82675	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.777077	921.5396	0.012129	5.6009E-06	-0.17574	-8.1152E-05	-0.16361	-7.5551E-05	461.777021623646	5.8155	0.10638	5.8155	5.7889	5.8953	0	690	31	0.86171403876517	0.0203637344294858	0.86171403876517	350.309708293305	0	8.27840042849704						166	13	3	NaN	NaN	NaN	0.00053825	1	2739	121.52	103.82	1	44686			7572	1473	6406	6577	7572	7572		
GLHVVEVTYDDVPIPNSPFK	20	Unmodified	_GLHVVEVTYDDVPIPNSPFK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	742.719555	2225.13683	0.044294	3.2898E-05	-0.56654	-0.00042078	-0.52225	-0.00038788	743.053526494631	15.056	0.12412	15.056	15.003	15.127	0	636	64	0.898312834727904	0.0426187151879737	0.898312834727904	543.040588967048	0	25.7635105522079						762	15	4	NaN	NaN	NaN	0.00075925	1	34945	89.359	89.26	1	205750			7573	326	6407	6578	7573	7573		
GLIAAICAGPTALLAHEIGFGSK	23	Unmodified	_GLIAAICAGPTALLAHEIGFGSK_			0	0	0	Q99497	Q99497	Q99497	PARK7	Protein deglycase DJ-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.412068	2266.21437	0.6071	0.00045922	-0.70993	-0.000537	-0.10283	-7.7785E-05	756.74599871924	19.109	0.18618	19.109	19.002	19.188	0	396	229	1.05987478976334	0.153314053461247	1.05987478976334	640.634669660386	0	92.6697181045051						3327	22	6	NaN	NaN	NaN	4.1777E-13	1	35339	105.79	94.109	1	863600			7574	2644	6408	6579	7574	7574		
GLIDYETFK	9	Unmodified	_GLIDYETFK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.279315	1084.54408	0.1624	8.8228E-05	0.24551	0.00013338	0.40791	0.00022161	543.279432312246	11.553	0.13305	11.553	11.5	11.633	0	636	43	0.898312834727904	0.0284341478220305	0.898312834727904	364.380783164616	0	11.5336847604411						253	16	2	NaN	NaN	NaN	0.067521	1	6322	24.121	14.607	1	92514			7575	718	6409	6580	7575	7575		
GLIEIISNAAEYENIPIR	18	Unmodified	_GLIEIISNAAEYENIPIR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.365112	2014.07351	0.10642	7.1552E-05	0.057907	3.8935E-05	0.16433	0.00011049	672.365096708019	19.463	0.062073	19.463	19.437	19.499	0	573	46	0.940896116921038	0.0303703038284173	0.940896116921038	569.152042291384	0	18.3711252901303						147	8	3	NaN	NaN	NaN	0.0016612	1	31876	44.045	43.526	1	30809			7576	350	6410	6581	7576	7576		
GLIEIISNAAEYENIPIR	18	Unmodified	_GLIEIISNAAEYENIPIR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.04403	2014.07351	1.3048	0.0013153	-0.66606	-0.00067141	0.63876	0.0006439	1008.5446651608	19.454	0.079799	19.454	19.428	19.508	0	171	106	1.20972836110953	0.0696531326830698	1.20972836110953	487.848207943904	0	28.0890793747687						547	10	4	NaN	NaN	NaN	0.00010549	1	31877	87.573	85.332	1	130230			7577	350	6410	6581	7577	7577		
GLIPVFALGR	10	Unmodified	_GLIPVFALGR_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.824027	1041.6335	-0.33401	-0.0001743	-3.014	-0.0015728	-3.348	-0.0017471	521.822495891029	16.599	0.13301	16.599	16.546	16.679	0	678	70	0.869855008346864	0.046761894798792	0.869855008346864	353.019772562766	0	18.9777299757649						485	16	3	NaN	NaN	NaN	0.036029	1	5270	29.102	20.339	1	132080			7578	3261	6411	6582	7578	7578		
GLIQQFTTITGASESVGK	18	Unmodified	_GLIQQFTTITGASESVGK_			0	0	0	O94888	O94888	O94888	UBXN7	UBX domain-containing protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.988723	1835.96289	1.7788	0.0016347	-7.7272	-0.0071012	-5.9484	-0.0054665	919.980453115537	15.411	0.17745	15.411	15.304	15.482	0	267	10	1.14597988355104	0.00598833474879878	1.14597988355104	462.447098574533	0	2.41652412020875						99	21	4	NaN	NaN	NaN	9.089E-07	1	28140	106.58	96.556	1	31359			7579	392	6412	6583	7579	7579		
GLIVYQLENQPSEFR	15	Unmodified	_GLIVYQLENQPSEFR_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.965051	1791.91555	1.9493	0.0017485	0.12269	0.00011005	2.072	0.0018585	897.467040070326	14.063	0.18621	14.063	13.983	14.169	0	267	70	1.14597988355104	0.0459358574095619	1.14597988355104	462.532295438872	0	18.5403058775867						665	22	5	NaN	NaN	NaN	1.2987E-06	1	27026	86.838	75.867	1	219600			7580	1462	6413	6584	7580	7580		
GLLALGDYMNVQCHACIGGTNVGEDIR	27	Unmodified	_GLLALGDYMNVQCHACIGGTNVGEDIR_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	978.461603	2932.36298	1.4932	0.001461	1.2235	0.0011972	2.7167	0.0026582	978.797532270503	15.606	0.062063	15.606	15.588	15.65	0	306	49	1.12000185836644	0.0320103814139743	1.12000185836644	676.040726528199	0	19.3216835721246						198	8	4	NaN	NaN	NaN	2.1989E-06	1	38123	48.201	48.051	1	26390			7581	1008	6414	6585	7581	7581		
GLLDDLRNDLDR	12	Unmodified	_GLLDDLRNDLDR_			0	0	1	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.247678	1413.72121	-2.1527	-0.0010166	-0.64543	-0.0003048	-2.7981	-0.0013214	472.24736746823	15.81	0.11527	15.81	15.757	15.872	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	485.6366266912	0	12.4019905057453						255	14	4	NaN	NaN	NaN	0.027034	1	15878	32.549	26.285	1	88811			7582	1567	6415	6586	7582	7582		
GLLDDLRNDLDR	12	Unmodified	_GLLDDLRNDLDR_			0	0	1	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.867879	1413.72121	1.3026	0.00092206	0.55548	0.0003932	1.8581	0.0013153	707.867908811035	15.81	0.13303	15.81	15.766	15.899	0	432	31	1.035754240522	0.0201198859944203	1.035754240522	418.901449478731	0	8.13730620321854						267	16	3	NaN	NaN	NaN	0.0037228	1	15881	113.46	100.86	1	75756			7583	1567	6415	6586	7583	7583		
GLLDVTCK	8	Unmodified	_GLLDVTCK_			0	0	0	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.241678	904.468803	-0.69022	-0.00031284	1.7548	0.00079533	1.0645	0.0004825	453.242470380577	8.21	0.25726	8.21	8.1302	8.3874	0	774	55	0.804600385996946	0.0367669890820503	0.804600385996946	327.182134342792	0	14.950902548124						527	30	3	NaN	NaN	NaN	0.01467	1	2405	58.286	34.711	1	168150			7584	1431	6416	6587	7584	7584		
GLLEESSFATLFPK	14	Unmodified	_GLLEESSFATLFPK_			0	0	0	Q13601	Q13601	Q13601	KRR1	KRR1 small subunit processome component homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.908682	1537.80281	1.2114	0.0009327	0.93817	0.00072231	2.1496	0.001655	769.909202527107	17.938	0.23939	17.938	17.805	18.045	0	288	37	1.13199748998575	0.0239747667739112	1.13199748998575	457.468103787603	0	9.68879453517985						266	28	2	NaN	NaN	NaN	0.020536	1	19669	34.779	30.797	1	78003			7585	1690	6417	6588	7585	7585		
GLLEFEHQR	9	Unmodified	_GLLEFEHQR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.793455	1127.57236	1.8554	0.0010479	0.75502	0.00042643	2.6105	0.0014744	564.794035252378	7.3319	0.31033	7.3319	7.2698	7.5801	0	603	40	0.920633820089869	0.0263610708448411	0.920633820089869	373.255990712662	0	10.6876669091706						629	36	4	NaN	NaN	NaN	0.0011101	1	7456	94.806	82.739	1	481780			7586	1771	6418	6589	7586	7586		
GLLGALTSTPYSPTQHLER	19	Unmodified	_GLLGALTSTPYSPTQHLER_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.028611	2040.064	0.4362	0.00029707	-0.46278	-0.00031517	-0.026577	-1.8099E-05	681.362507013006	13.336	0.079824	13.336	13.292	13.371	0	594	52	0.926715457081489	0.0344769526882287	0.926715457081489	560.525260463224	0	20.8534375226767						392	10	4	NaN	NaN	NaN	0.0010141	1	32346	50.641	48.4	1	87966			7587	3057	6419	6590	7587	7587		
GLLGALTSTPYSPTQHLER	19	Unmodified	_GLLGALTSTPYSPTQHLER_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.03928	2040.064	0.78808	0.00080466	0.15222	0.00015542	0.9403	0.00096008	1021.54124657115	13.336	0.088694	13.336	13.292	13.38	0	105	31	1.25339330680955	0.0198205070176776	1.25339330680955	505.412921965449	0	7.99233593495109						221	11	4	NaN	NaN	NaN	6.6508E-05	1	32347	59.77	47.088	1	43388			7588	3057	6419	6590	7588	7588		
GLLGLPEEETELDNLTEFNTAHNK	24	Unmodified	_GLLGLPEEETELDNLTEFNTAHNK_			0	0	0	Q12972	Q12972	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	895.439845	2683.2977	0.96453	0.00086368	0.5723	0.00051246	1.5368	0.0013761	895.774648946967	16.759	0.1064	16.759	16.714	16.821	0	354	43	1.08796502040166	0.0280631418672823	1.08796502040166	656.990798903294	0	16.9465246118992						469	13	5	NaN	NaN	NaN	0.00069409	1	37560	49.485	45.045	1	143940			7589	1612	6420	6591	7589	7589		
GLLHSFDLLK	10	Unmodified	_GLLHSFDLLK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.832049	1141.64954	0.81285	0.00046481	0.27351	0.0001564	1.0864	0.00062121	571.83217719898	13.389	0.10643	13.389	13.345	13.451	0	534	37	0.967195187796614	0.0242575920930522	0.967195187796614	392.07513487448	0	9.8333809055444						230	13	3	NaN	NaN	NaN	3.6282E-05	1	7847	105.36	82.972	1	84895			7590	2796	6421	6592	7590	7590		
GLLLYGPPGTGK	12	Unmodified	_GLLLYGPPGTGK_			0	0	0	Q8IYT4	Q8IYT4	Q8IYT4	KATNAL2	Katanin p60 ATPase-containing subunit A-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.837331	1171.66011	1.5022	0.00088157	-0.58071	-0.00034078	0.92153	0.00054079	586.83721281274	10.729	0.18622	10.729	10.658	10.844	0	582	43	0.934820374997243	0.0283593603705795	0.934820374997243	378.835400876885	0	11.492613920222						551	22	4	NaN	NaN	NaN	0.011115	1	8657	53.517	0	1	288230			7591	2228	6422	6593	7591	7591		
GLLPEELTPLILATQK	16	Unmodified	_GLLPEELTPLILATQK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.344989	1735.01314	-1.2624	-0.00073136	1.5361	0.00088994	0.27372	0.00015858	579.346017888817	19.277	0.097552	19.277	19.233	19.33	0	645	34	0.892219381832517	0.0223457630982734	0.892219381832517	540.300442334537	0	13.531902503062						265	12	4	NaN	NaN	NaN	0.0027488	1	25479	37.504	35.662	1	84913			7592	685	6423	6594	7592	7592		
GLLPEELTPLILATQK	16	Unmodified	_GLLPEELTPLILATQK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.513845	1735.01314	1.3468	0.0011697	0.15395	0.00013371	1.5007	0.0013034	869.015517723145	19.286	0.15074	19.286	19.233	19.383	0	297	118	1.12600091227925	0.0779878404689971	1.12600091227925	454.582963214064	0	31.4848267247854						1132	18	5	NaN	NaN	NaN	1.2258E-06	1	25480	91.245	81.983	1	498290			7593	685	6423	6594	7593	7593		
GLLPEHFLFLAQK	13	Unmodified	_GLLPEHFLFLAQK_			0	0	0	P42226	P42226	P42226	STAT6	Signal transducer and activator of transcription 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.957288	1511.85004	-2.3659	-0.0011947	0.38974	0.0001968	-1.9761	-0.00099785	505.291815844656	16.094	0.10643	16.094	16.049	16.156	0	786	40	0.796423123669906	0.0265927576463694	0.796423123669906	482.852360131571	0	16.122555222641						283	13	4	NaN	NaN	NaN	0.0017812	1	18868	53.517	35.786	1	72783			7594	1045	6424	6595	7594	7594		
GLLPEHFLFLAQK	13	Unmodified	_GLLPEHFLFLAQK_			0	0	0	P42226	P42226	P42226	STAT6	Signal transducer and activator of transcription 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.932294	1511.85004	1.2585	0.0009526	-0.027122	-2.053E-05	1.2314	0.00093207	756.932430485006	16.103	0.088662	16.103	16.058	16.147	0	369	25	1.07793901817685	0.0160471329064824	1.07793901817685	435.688458745538	0	6.48603537437134						190	11	3	NaN	NaN	NaN	0.00042278	1	18869	70.389	66.406	1	49303			7595	1045	6424	6595	7595	7595		
GLLPGCVYHVQLK	13	Unmodified	_GLLPGCVYHVQLK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.408129	1482.8017	1.5722	0.0011672	-1.2008	-0.00089148	0.37143	0.00027576	742.907301079732	11.5	0.14188	11.5	11.429	11.571	0	351	58	1.08996939197032	0.0381093274635713	1.08996939197032	440.629266278306	0	15.4060151801862						261	17	3	NaN	NaN	NaN	0.0076984	1	18002	43.272	40.17	1	57618			7596	1452;1818	6425	6596	7596	7596		
GLLPGLLPAPADK	13	Unmodified	_GLLPGLLPAPADK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.379363	1260.74417	0.53396	0.00033713	-1.6232	-0.0010249	-1.0892	-0.00068773	631.378088929976	15.012	0.079824	15.012	14.967	15.047	0	546	52	0.959108205975751	0.0343815779756202	0.959108205975751	388.358297522119	0	13.9216524324821						261	10	3	NaN	NaN	NaN	0.0067755	1	11252	50.297	39.595	1	62848			7597	2063	6426	6597	7597	7597		
GLLPQLLGVAPEK	13	Unmodified	_GLLPQLLGVAPEK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.905745	1333.79694	0.52878	0.00035317	-1.1196	-0.00074778	-0.59081	-0.0003946	667.904900563519	15.987	0.15071	15.987	15.934	16.085	1.7764E-15	504	76	0.987393073566096	0.0504772893757327	0.987393073566096	399.573956725195	0	20.4269310577395						659	18	4	NaN	NaN	NaN	0.0063847	1	13408	33.751	0	1	235900			7598	3248	6427	6598	7598	7598		
GLLQLQWK	8	Unmodified	_GLLQLQWK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.295102	984.575651	-0.81788	-0.00040346	-1.5985	-0.00078853	-2.4164	-0.001192	493.294083264037	13.744	0.14184	13.744	13.691	13.832	0	729	46	0.835224628594324	0.0305987056772422	0.835224628594324	339.221583106037	0	12.4274848052539						312	17	3	NaN	NaN	NaN	0.005209	1	3946	64.547	45.06	1	167200			7599	389	6428	6599	7599	7599		
GLLQTEPQNNQAK	13	Unmodified	_GLLQTEPQNNQAK_			0	0	0	Q9Y3D6	Q9Y3D6	Q9Y3D6	FIS1	Mitochondrial fission 1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.875704	1439.73686	3.1069	0.0022397	-1.7112	-0.0012335	1.3958	0.0010062	720.874769696246	5.1149	0.11528	5.1149	5.0795	5.1947	0	414	67	1.04781950764076	0.0442515503698817	1.04781950764076	423.706953136126	0	17.8940069754844						356	14	3	NaN	NaN	NaN	2.9861E-07	1	16671	107.08	93.804	1	68030			7600	3388	6429	6600	7600	7600		
GLLSDSMTDVPVDTGVAAR	19	Unmodified	_GLLSDSMTDVPVDTGVAAR_			0	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.475122	1902.93569	2.723	0.0025936	0.19729	0.00018791	2.9203	0.0027815	952.474762430201	13.832	0.20394	13.832	13.779	13.983	0	243	55	1.16194328902838	0.0358979289747297	1.16194328902838	468.76516412239	0	14.4823751093432						505	24	5	NaN	NaN	NaN	2.0897E-14	1	29662	155.34	143.85	1	455910			7601	199	6430	6601	7601	7601		
GLLSELLHNCDGQLK	15	Unmodified	_GLLSELLHNCDGQLK_			0	0	0	P40938	P40938	P40938	RFC3	Replication factor C subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.294411	1695.8614	-1.9964	-0.0011305	-1.0754	-0.00060897	-3.0717	-0.0017395	566.29373344628	14.888	0.10638	14.888	14.852	14.959	0	765	34	0.810730346695089	0.0224702728223195	0.810730346695089	491.042941686388	0	13.6097888923816						218	13	4	NaN	NaN	NaN	0.0016375	1	24379	51.454	42.192	1	54118			7602	1025	6431	6602	7602	7602		
GLLSELLHNCDGQLK	15	Unmodified	_GLLSELLHNCDGQLK_			0	0	0	P40938	P40938	P40938	RFC3	Replication factor C subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.937979	1695.8614	0.70636	0.00059965	3.6901	0.0031327	4.3965	0.0037324	848.941248165686	14.888	0.097509	14.888	14.852	14.95	0	246	40	1.1599488233373	0.0259280591275983	1.1599488233373	468.373899709489	0	10.4694499629318						227	12	4	NaN	NaN	NaN	0.0023429	1	24381	56.938	53.433	1	52865			7603	1025	6431	6602	7603	7603		
GLLSSLDHTSIR	12	Unmodified	_GLLSSLDHTSIR_			0	0	0	P08574	P08574	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.856783	1297.69901	1.5641	0.0010165	1.3489	0.00087657	2.913	0.001893	649.857412759031	10.197	0.12414	10.197	10.161	10.285	0	459	31	1.01763759082241	0.02014212547595	1.01763759082241	411.930615714944	0	8.15335265122269						345	15	4	NaN	NaN	NaN	0.00030832	1	12298	111.61	96.025	1	140080			7604	584	6432	6603	7604	7604		
GLLTYTSWEDALSR	14	Unmodified	_GLLTYTSWEDALSR_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.404295	1610.79404	1.9522	0.0015743	0.78058	0.00062946	2.7328	0.0022037	806.404653503381	16.617	0.15964	16.617	16.573	16.732	0	342	40	1.09598084995137	0.0260460676127405	1.09598084995137	442.733777594712	0	10.521601637645						364	19	3	NaN	NaN	NaN	0.00034831	1	21921	64.266	59.115	1	131910			7605	877	6433	6604	7605	7605		
GLMLVHNK	8	Unmodified	_GLMLVHNK_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.260205	910.505857	0.44165	0.00020151	-0.04982	-2.2731E-05	0.39183	0.00017878	456.260259904786	4.2549	0.20395	4.2549	4.2105	4.4145	0	723	31	0.839303037468863	0.0203892128493071	0.839303037468863	341.25976066488	0	8.29023318929421						275	24	3	NaN	NaN	NaN	0.061641	1	2520	44.42	33.592	1	70375			7606	1092	6434	6605	7606	7606		
GLMVLELPK	9	Unmodified	_GLMVLELPK_			0	0	0	Q99567	Q99567	Q99567	NUP88	Nuclear pore complex protein Nup88	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.298996	998.583439	-0.43331	-0.00021679	-2.0241	-0.0010127	-2.4574	-0.0012295	500.297991329639	14.409	0.10641	14.409	14.356	14.462	0	669	46	0.875957769340875	0.0305180491511973	0.875957769340875	355.696348239373	0	12.3923310214358						247	13	3	NaN	NaN	NaN	0.033456	1	4263	37.722	28.959	1	48596			7607	2650	6435	6606	7607	7607		
GLMYPYIFHVLTK	13	Unmodified	_GLMYPYIFHVLTK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.954779	1580.84251	-1.5244	-0.00080483	-0.59572	-0.00031451	-2.1202	-0.0011193	528.288458682717	16.812	0.21282	16.812	16.697	16.91	0	690	25	0.86171403876517	0.0162864625285778	0.86171403876517	522.230054781866	0	9.87018875854676						336	25	3	NaN	NaN	NaN	0.071475	1	21005	8.3744	5.7033	1	71335			7608	3129	6436	6607	7608	7608		
GLNDFQCWEK	10	Unmodified	_GLNDFQCWEK_			0	0	0	Q9BRX5	Q9BRX5	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.787512	1295.56047	1.3272	0.00086105	-1.3735	-0.00089109	-0.046302	-3.004E-05	649.287758754452	10.755	0.11526	10.755	10.702	10.817	1.7764E-15	558	37	0.951016745717027	0.0242777450705638	0.951016745717027	384.969796289676	0	9.82758570369964						284	14	4	NaN	NaN	NaN	0.071084	1	12219	24.821	19.914	1	59536			7609	2717	6437	6608	7609	7609		
GLNELMNVCQHVLDK	15	Unmodified	_GLNELMNVCQHVLDK_			0	0	0	P0DPB6	P0DPB6	P0DPB6			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.627285	1768.86002	-0.88754	-0.0005242	-0.21795	-0.00012873	-1.1055	-0.00065293	590.626968790652	13.23	0.088696	13.23	13.194	13.283	0	723	31	0.839303037468863	0.0203892128493071	0.839303037468863	508.178941648383	0	12.3452056578418						227	11	4	NaN	NaN	NaN	0.00048999	1	26381	65.173	56.366	1	53747			7610	620	6438	6609	7610	7610		
GLNELMNVCQHVLDK	15	Unmodified	_GLNELMNVCQHVLDK_			0	0	0	P0DPB6	P0DPB6	P0DPB6			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.437289	1768.86002	1.8831	0.0016673	1.6671	0.0014762	3.5502	0.0031435	885.438763276632	13.23	0.13301	13.23	13.185	13.318	0	237	28	1.16593139812432	0.0179452593666323	1.16593139812432	470.63207719035	0	7.24366348228074						270	16	5	NaN	NaN	NaN	6.9873E-08	1	26382	86.729	74.71	1	64385			7611	620	6438	6609	7611	7611		
GLNSESMTEETLK	13	Unmodified	_GLNSESMTEETLK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.840139	1437.66572	2.5384	0.0018272	1.2559	0.00090405	3.7943	0.0027313	719.841700593343	7.3585	0.39014	7.3585	7.2698	7.66	0	489	91	0.997481546940468	0.0604598348511052	0.997481546940468	403.357301779544	0	24.4484882215411						1689	45	6	NaN	NaN	NaN	7.4954E-17	1	16600	200.76	175.94	1	1418900			7612	922	6439	6610	7612	7612		
GLNSESMTEETLK	13	Oxidation (M)	_GLNSESM(Oxidation (M))TEETLK_	GLNSESM(1)TEETLK	GLNSESM(110)TEETLK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.837596	1453.66064	2.2239	0.0016186	-0.90893	-0.00066155	1.315	0.00095709	727.837339167904	4.8135	0.27489	4.8135	4.7248	4.9997	0	501	46	0.98941132619024	0.0302696119755409	0.98941132619024	400.051951999035	0	12.2390122657036						668	32	4	NaN	NaN	NaN	0.00010809	1	17070	106.11	89.12	1	226790			7613	922	6439	6611	7613	7613	313	
GLPDNISSVLNK	12	Unmodified	_GLPDNISSVLNK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.845884	1255.67722	0.7854	0.0004939	1.371	0.00086212	2.1564	0.001356	628.846445273456	12.387	0.19505	12.387	12.281	12.476	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.737236906946	0	9.82951704274507						406	23	4	NaN	NaN	NaN	0.0065392	1	11092	41.824	33.641	1	117840			7614	1912	6440	6612	7614	7614		
GLPFQANAQDIINFFAPLK	19	Unmodified	_GLPFQANAQDIINFFAPLK_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.56493	2103.11531	1.5587	0.0016406	-0.92992	-0.0009788	0.62879	0.00066185	1053.06632914053	20.137	0.035472	20.137	20.128	20.164	0	135	58	1.23356193185193	0.0377028745088666	1.23356193185193	497.315392196363	0	15.2000636037444						192	5	4	NaN	NaN	NaN	0.039908	1	33366	20.966	19.492	1	60686			7615	1600	6441	6613	7615	7615		
GLPGDVTNQEVHDLLSDYELK	21	Unmodified	_GLPGDVTNQEVHDLLSDYELK_			0	0	0	Q8IY67	Q8IY67	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	781.388533	2341.14377	0.086425	6.7531E-05	-0.95841	-0.00074889	-0.87198	-0.00068136	781.722155042777	16.661	0.16848	16.661	16.59	16.759	0	534	28	0.967195187796614	0.0181894169559895	0.967195187796614	584.501119001084	0	10.9923360857217						288	20	3	NaN	NaN	NaN	0.0062743	1	35974	30.392	27.895	1	55257			7616	2219	6442	6614	7616	7616		
GLPLFPLVK	9	Unmodified	_GLPLFPLVK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.318046	982.621539	-1.0615	-0.00052259	-1.47	-0.00072373	-2.5315	-0.0012463	492.317378355963	16.67	0.19507	16.67	16.599	16.794	0	705	46	0.851531465363931	0.0305519708780012	0.851531465363931	345.853983792277	0	12.4088436783089						526	23	3	NaN	NaN	NaN	0.060972	1	3903	17.395	1.8137	1	191330			7617	702	6443	6615	7617	7617		
GLPLGSAVSSPVLFSPVGR	19	Unmodified	_GLPLGSAVSSPVLFSPVGR_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.519993	1839.02543	0.88083	0.00081082	-0.75479	-0.00069479	0.12604	0.00011602	920.520309145772	16.856	0.1064	16.856	16.812	16.918	0	255	37	1.15396378101328	0.0239418187322806	1.15396378101328	465.663070200904	0	9.66132646492406						278	13	3	NaN	NaN	NaN	0.0001041	1	28207	83.474	76.268	1	75601			7618	2369	6444	6616	7618	7618		
GLPLVDDGGWNTVPISK	17	Unmodified	_GLPLVDDGGWNTVPISK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.467426	1766.9203	2.6636	0.0023559	-2.1101	-0.0018663	0.55353	0.00048958	884.465445225498	15.571	0.28387	15.571	15.446	15.73	0	324	73	1.1079963157843	0.0480023729585286	1.1079963157843	447.250220755179	0	19.3764831133735						1354	33	4	NaN	NaN	NaN	2.2168E-08	1	26321	144.16	127.4	1	601090			7619	1544	6445	6617	7619	7619		
GLPVTCEVAPHHLFLSHDDLER	22	Unmodified	_GLPVTCEVAPHHLFLSHDDLER_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	636.318137	2541.24344	1.0865	0.00069138	-0.12699	-8.0805E-05	0.95955	0.00061058	636.568958187297	10.738	0.097564	10.738	10.693	10.791	0	600	28	0.922661313351899	0.0182474411105494	0.922661313351899	743.103931282844	0	14.6963409312577						280	12	5	NaN	NaN	NaN	0.00012853	1	36993	45.587	41.828	1	65426			7620	867	6446	6618	7620	7620		
GLPWSCSADEVMR	13	Unmodified	_GLPWSCSADEVMR_			0	0	0	P55795	P55795	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.337043	1506.65953	1.3306	0.0010037	0.37955	0.00028631	1.7101	0.00129	754.337460998189	12.29	0.13304	12.29	12.219	12.352	0	468	64	1.01159370163332	0.0422955594974614	1.01159370163332	408.885350796472	0	17.0958307216915						754	16	5	NaN	NaN	NaN	0.00014271	1	18689	96.946	87.968	1	283410			7621	1278	6447	6619	7621	7621		
GLPWSCSADEVMR	13	Oxidation (M)	_GLPWSCSADEVM(Oxidation (M))R_	GLPWSCSADEVM(1)R	GLPWSCSADEVM(64)R	0	1	0	P55795	P55795	P55795	HNRNPH2	Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.334501	1522.65445	1.9542	0.0014898	-0.70625	-0.0005384	1.248	0.00095136	762.334324431562	9.8686	0.08868	9.8686	9.8332	9.9218	0	477	31	1.0055473068722	0.0201560438819375	1.0055473068722	406.402540459583	0	8.14627753786561						201	11	3	NaN	NaN	NaN	0.0018172	1	19190	64.266	59.115	1	46071			7622	1278	6447	6620	7622	7622	452	
GLPWSCSADEVQR	13	Unmodified	_GLPWSCSADEVQR_			0	0	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.84609	1503.67763	2.0736	0.0015611	1.2479	0.00093944	3.3214	0.0025005	752.84739452703	9.6647	0.29266	9.6647	9.5849	9.8776	0	471	67	1.00957851518677	0.0443555739559077	1.00957851518677	408.078176973472	0	17.9288103760708						934	34	3	NaN	NaN	NaN	4.7959E-11	1	18615	142.71	121.56	1	1232200			7623	931	6448	6621	7623	7623		
GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR	33	Unmodified	_GLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	938.687155	3750.71951	1.7212	0.0016156	1.2232	0.0011482	2.9444	0.0027639	939.189979983111	19.508	0.13301	19.508	19.437	19.57	0	330	34	1.10399226369747	0.0220238059754376	1.10399226369747	887.5860638819	0	17.7066668854793						411	16	6	NaN	NaN	NaN	1.4515E-10	1	38721	53.018	52.882	1	95552			7624	1217	6449	6622	7624	7624		
GLQAPAGEPTQEASGVAAAK	20	Unmodified	_GLQAPAGEPTQEASGVAAAK_			0	0	0	P33897	P33897	P33897	ABCD1	ATP-binding cassette sub-family D member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.973604	1851.93266	1.8114	0.0016791	-0.89265	-0.00082747	0.9187	0.00085161	926.972839095247	7.0392	0.062108	7.0392	7.0126	7.0747	0	291	40	1.12999890578964	0.0259959052130696	1.12999890578964	455.968648800913	0	10.4896719046616						79	8	2	NaN	NaN	NaN	0.019081	1	28543	25.185	24.378	1	13158			7625	949	6450	6623	7625	7625		
GLQAQIASSGLTVEVDAPK	19	Unmodified	_GLQAQIASSGLTVEVDAPK_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.50728	1883.00001	1.6572	0.0015619	-0.53163	-0.00050106	1.1255	0.0010608	942.506672540262	13.07	0.28375	13.07	13.026	13.309	0	156	187	1.21966378336455	0.123089995234872	1.21966378336455	492.08917119405	0	49.662254929237						2418	33	5	NaN	NaN	NaN	3.1651E-22	1	29218	153.08	111.02	1	575530			7626	536	6451	6624	7626	7626		
GLQLTPGIGGMQQHFFDDEDR	21	Unmodified	_GLQLTPGIGGMQQHFFDDEDR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.702458	2360.08554	0.49787	0.00039217	-0.33323	-0.00026249	0.16464	0.00012969	788.0365546	14.577	0.053184	14.577	14.56	14.613	0	588	34	0.93076847747433	0.0222869832094168	0.93076847747433	562.46088929609	0	13.4679640523616						106	7	3	NaN	NaN	NaN	0.050562	1	36123	6.9894	6.4704	1	15088			7627	667	6452	6625	7627	7627		
GLQQQNSDWYLK	12	Unmodified	_GLQQQNSDWYLK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.364973	1478.71539	1.2484	0.00092424	2.0261	0.0015	3.2744	0.0024243	740.36643370695	9.4164	0.26601	9.4164	9.31	9.576	0	444	40	1.02770517576159	0.0261757253352226	1.02770517576159	415.469037433249	0	10.5820265049098						537	31	3	NaN	NaN	NaN	7.9505E-17	1	17855	184.27	158.66	1	577900			7628	1095	6453	6626	7628	7628		
GLQSIFQEQGMAESVHTWQDHGYLATYTNK	30	Unmodified	_GLQSIFQEQGMAESVHTWQDHGYLATYTNK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	860.655752	3438.5939	1.7348	0.001493	-0.059895	-5.1549E-05	1.6749	0.0014415	861.157333020779	15.26	0.097517	15.26	15.225	15.322	0	426	34	1.03977710643793	0.0221211851351335	1.03977710643793	836.239055031396	0	17.7909273430256						361	12	6	NaN	NaN	NaN	2.5968E-28	1	38626	112.33	106.54	1	99880			7629	1222	6454	6627	7629	7629		
GLQTVHINENFAK	13	Unmodified	_GLQTVHINENFAK_			0	0	0	Q13573	Q13573	Q13573	SNW1	SNW domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.888615	1469.76268	1.906	0.0014026	-1.1292	-0.00083094	0.77686	0.00057168	735.88776385931	7.9527	0.097603	7.9527	7.9261	8.0237	0	378	37	1.07192009927972	0.0240839792188599	1.07192009927972	433.368230990708	0	9.73694912177461						266	12	4	NaN	NaN	NaN	3.2521E-08	1	17581	137.58	125	1	78665			7630	1687	6455	6628	7630	7630		
GLSEDTTEETLK	12	Unmodified	_GLSEDTTEETLK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.819729	1321.62491	1.8286	0.0012102	2.3443	0.0015515	4.1728	0.0027616	661.82158267527	5.8421	0.46112	5.8421	5.7179	6.1791	0	552	106	0.955063035883597	0.0708248878377021	0.955063035883597	386.527262820963	0	28.6638148550912						1205	53	5	NaN	NaN	NaN	9.5361E-12	1	13025	163.43	142.34	1	2640800			7631	764	6456	6629	7631	7631		
GLSEDVSISK	10	Unmodified	_GLSEDVSISK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.771854	1033.52915	0.59331	0.0003072	-1.217	-0.00063014	-0.62371	-0.00032294	517.771978026152	6.3565	0.22167	6.3565	6.3033	6.5249	0	693	40	0.85967808974117	0.0264673426716941	0.85967808974117	348.925274961051	0	10.7425383168597						346	26	4	NaN	NaN	NaN	0.050195	1	5090	36.24	28.058	1	102040			7632	1796	6457	6630	7632	7632		
GLSFLFPLLK	10	Unmodified	_GLSFLFPLLK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.84971	1133.68487	0.19509	0.00011078	-1.0495	-0.00059595	-0.8544	-0.00048517	567.849108356534	19.898	0.079803	19.898	19.88	19.96	0	621	49	0.908462957275599	0.0324556427464261	0.908462957275599	368.297533664019	0	13.1577551745602						299	10	4	NaN	NaN	NaN	0.0052135	1	7643	67.464	56.762	1	168490			7633	1457	6458	6631	7633	7633		
GLSGTAVLDLR	11	Unmodified	_GLSGTAVLDLR_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.316763	1100.61897	0.92947	0.00051243	-5.3636	-0.002957	-4.4341	-0.0024446	551.312554144979	11.367	0.13306	11.367	11.296	11.429	0	585	43	0.932794566565362	0.0283672188304905	0.932794566565362	378.298236915702	0	11.5044290076539						211	16	2	NaN	NaN	NaN	0.042586	1	6745	27.589	12.007	1	64534			7634	2892	6459	6632	7634	7634		
GLSIEQLTTLAEK	13	Unmodified	_GLSIEQLTTLAEK_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.893032	1401.77151	1.1694	0.00082077	0.25579	0.00017953	1.4251	0.0010003	701.893130553602	15.225	0.12411	15.225	15.189	15.313	0	432	34	1.035754240522	0.022130347528504	1.035754240522	418.936044142842	0	8.95115837944849						281	15	3	NaN	NaN	NaN	0.0026306	1	15520	65.879	53.283	1	89081			7635	1020	6460	6633	7635	7635		
GLSPAQADSQFLENAK	16	Unmodified	_GLSPAQADSQFLENAK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.417933	1674.82131	3.0061	0.0025204	-2.6293	-0.0022045	0.3768	0.00031591	838.416002613713	10.454	0.23058	10.454	10.339	10.569	0	354	61	1.08796502040166	0.0400736445375593	1.08796502040166	439.352429341948	0	16.1829220149581						821	27	3	NaN	NaN	NaN	0.00019611	1	23762	82.437	78.13	1	232560			7636	206	6461	6634	7636	7636		
GLSSEAVTSLLPK	13	Unmodified	_GLSSEAVTSLLPK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.369192	1300.72383	2.0201	0.0013158	0.33471	0.00021802	2.3548	0.0015338	651.369558882759	13.868	0.31918	13.868	13.646	13.966	0	417	43	1.04580932352505	0.0281484102411274	1.04580932352505	423.32391675053	0	11.3939463012344						624	37	3	NaN	NaN	NaN	0.014756	1	12375	39.293	27.937	1	144480		+	7637	22	6462	6635	7637	7637		
GLSSLLCNFTK	11	Unmodified	_GLSSLLCNFTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.323731	1238.63291	0.85412	0.00052983	-2.3529	-0.0014596	-1.4988	-0.00092975	620.323707656117	15.198	0.1862	15.198	15.154	15.34	0	576	52	0.938871150116794	0.0344196803127764	0.938871150116794	380.23750792217	0	13.9397759362185						477	22	4	NaN	NaN	NaN	0.0016517	1	10579	74.424	58.842	1	186490			7638	1465	6463	6636	7638	7638		
GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR	33	Unmodified	_GLTEGLHGFHVHEFGDNTAGCTSAGPHFNPLSR_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	880.661635	3518.61743	2.3444	0.0020646	-1.5586	-0.0013726	0.78579	0.00069201	880.909826133749	11.784	0.22171	11.784	11.731	11.953	0	432	175	1.035754240522	0.116294072769473	1.035754240522	832.927303141742	0	93.5207451860675						2948	26	6	NaN	NaN	NaN	8.6355E-16	1	38661	105.77	102.43	1	985540			7639	479	6464	6637	7639	7639		
GLTMLDHEQVTPEDPGAQFLIR	22	Unmodified	_GLTMLDHEQVTPEDPGAQFLIR_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.081046	2466.22131	0.65838	0.0005419	0.067689	5.5713E-05	0.72607	0.00059761	823.415600349596	14.914	0.10641	14.914	14.87	14.976	-1.7764E-15	543	61	0.961130371139249	0.0404517201034513	0.961130371139249	580.662240601487	0	24.4387100197579						578	13	5	NaN	NaN	NaN	2.2021E-08	1	36661	86.952	80.27	1	149050			7640	3172	6465	6638	7640	7640		
GLTSVINQK	9	Unmodified	_GLTSVINQK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.279649	958.544745	0.16827	8.0818E-05	0.12592	6.0475E-05	0.29419	0.00014129	480.279831005707	6.3033	0.32812	6.3033	6.2411	6.5693	0	714	91	0.845418525735192	0.0611252158047161	0.845418525735192	343.490199031705	0	24.834933117132						628	38	4	NaN	NaN	NaN	0.00026081	1	3414	89.123	48.098	1	328460			7641	553	6466	6639	7641	7641		
GLTVPIASIDIPSGWDVEK	19	Unmodified	_GLTVPIASIDIPSGWDVEK_			0	0	0	Q8NCW5	Q8NCW5	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.03313	1996.05171	1.4504	0.001449	-0.9877	-0.00098675	0.46271	0.00046227	999.533838166023	18.452	0.1242	18.452	18.408	18.532	0	174	97	1.20774045859593	0.0636435206366788	1.20774045859593	487.076646714756	0	25.6671641627982						894	15	4	NaN	NaN	NaN	6.9674E-07	1	31568	120.21	105.19	1	270230			7642	2302	6467	6640	7642	7642		
GLVAIPVSIFYSVPHQK	17	Unmodified	_GLVAIPVSIFYSVPHQK_			0	0	0	Q16773	Q16773	Q16773	CCBL1	Kynurenine--oxoglutarate transaminase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.027454	1854.04036	-0.60409	-0.00056061	1.6554	0.0015362	1.0513	0.00097563	928.028964786271	17.06	0.079806	17.06	17.034	17.114	0	75	46	1.27319752866042	0.0296961677825143	1.27319752866042	513.746726902407	0	11.9826724890544						273	10	3	NaN	NaN	NaN	0.0025795	1	28580	30.068	25.761	1	56831			7643	1906	6468	6641	7643	7643		
GLVAVITGGASGLGLATAER	20	Unmodified	_GLVAVITGGASGLGLATAER_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.01078	1812.01051	-0.63275	-0.00038282	0.28111	0.00017008	-0.35164	-0.00021274	605.010853519321	16.732	0.11529	16.732	16.697	16.812	0	579	61	0.936845902828289	0.040479730715125	0.936845902828289	567.133977455519	0	24.5050233101194						452	14	4	NaN	NaN	NaN	0.0078388	1	27537	79.235	63.619	1	115900			7644	2667	6469	6642	7644	7644		
GLVAVITGGASGLGLATAER	20	Unmodified	_GLVAVITGGASGLGLATAER_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.012532	1812.01051	0.7661	0.00069486	0.30245	0.00027432	1.0685	0.00096918	907.01295388849	16.732	0.12416	16.732	16.688	16.812	0	291	64	1.12999890578964	0.041952970811898	1.12999890578964	456.043323170886	0	16.9313192498885						645	15	5	NaN	NaN	NaN	3.0852E-11	1	27538	125.75	119.73	1	277470			7645	2667	6469	6642	7645	7645		
GLVETAAHLGYSVVAINHIVDFK	23	Unmodified	_GLVETAAHLGYSVVAINHIVDFK_			0	0	0	P78346	P78346	P78346	RPP30	Ribonuclease P protein subunit p30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.444425	2452.31144	0.98671	0.00080757	0.74127	0.00060669	1.728	0.0014143	818.779795990849	18.585	0.053194	18.585	18.559	18.612	0	321	19	1.10999792833052	0.012010502670277	1.10999792833052	670.621156868718	0	7.25631732252896						104	7	4	NaN	NaN	NaN	0.00014753	1	36591	68.127	68.127	1	17664			7646	1458	6470	6643	7646	7646		
GLVLDHGAR	9	Unmodified	_GLVLDHGAR_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.264333	936.514114	1.351	0.00063397	1.3373	0.00062756	2.6883	0.0012615	469.265018950456	3.5987	0.29254	3.5987	3.5544	3.847	4.4409E-16	681	49	0.867820189810857	0.0325548466595607	0.867820189810857	352.709148579436	0	13.2313034223488						686	34	4	NaN	NaN	NaN	0.0068111	1	3007	70.67	59.021	1	376590			7647	1016	6471	6644	7647	7647		
GLVLGPIHK	9	Unmodified	_GLVLGPIHK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.297645	932.580737	0.18143	8.4783E-05	1.0653	0.00049782	1.2468	0.0005826	467.298207528997	7.0836	0.43452	7.0836	7.0126	7.4472	0	699	55	0.85560534332665	0.0366649158136713	0.85560534332665	347.765864176191	0	14.9026723971974						989	50	4	NaN	NaN	NaN	0.067075	1	2927	23.575	1.6474	1	776650			7648	576	6472	6645	7648	7648		
GLVPPMHLADILMK	14	Unmodified	_GLVPPMHLADILMK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.287652	1533.84113	-2.8017	-0.0014353	1.7499	0.00089643	-1.0519	-0.00053886	512.288769705034	16.812	0.15075	16.812	16.75	16.901	0	819	22	0.773912161060781	0.0143351345420983	0.773912161060781	469.143539995942	0	8.68992129052475						217	18	3	NaN	NaN	NaN	0.070892	1	19552	10.485	8.9824	1	40627			7649	1766	6473	6646	7649	7649		
GLVPTDYVEILPSDGK	16	Unmodified	_GLVPTDYVEILPSDGK_			0	0	0	Q9Y5X1	Q9Y5X1	Q9Y5X1	SNX9	Sorting nexin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.948535	1701.88252	2.1501	0.0018317	0.94491	0.00080502	3.095	0.0026368	852.449179276429	15.526	0.18633	15.526	15.455	15.642	0	318	79	1.11199926528787	0.0520168956749294	1.11199926528787	448.999556379538	0	21.0032180877727						596	22	4	NaN	NaN	NaN	0.046148	1	24562	26.517	18.959	1	117330			7650	3444	6474	6647	7650	7650		
GLVQALQTK	9	Unmodified	_GLVQALQTK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.290017	956.565481	-0.1073	-5.1429E-05	-0.60953	-0.00029214	-0.71683	-0.00034357	479.28975464826	7.4472	0.1596	7.4472	7.4028	7.5624	0	726	37	0.837263974740672	0.0244704573832687	0.837263974740672	340.186992599312	0	9.94254089019199						331	19	3	NaN	NaN	NaN	0.015552	1	3373	51.864	36.366	1	160600			7651	1127	6475	6648	7651	7651		
GLVVDMDGFEEERK	14	Unmodified	_GLVVDMDGFEEERK_			0	0	1	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.927617	1622.76102	0.32036	0.00017361	-0.97933	-0.00053073	-0.65897	-0.00035712	542.261504455849	10.95	0.22167	10.95	10.879	11.101	0	708	37	0.849494101904619	0.0244534611468455	0.849494101904619	514.708970232957	0	14.8163663259167						446	26	5	NaN	NaN	NaN	1.2426E-05	1	22260	127.93	122.78	1	186630			7652	1136	6476	6649	7652	7652		
GLVVDMDGFEEERK	14	Unmodified	_GLVVDMDGFEEERK_			0	0	1	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.387787	1622.76102	3.0095	0.0024449	-0.49806	-0.00040462	2.5114	0.0020402	812.387859822148	10.95	0.12414	10.95	10.888	11.012	0	348	40	1.09197348738011	0.0260532455206195	1.09197348738011	441.087228070699	0	10.5238396185852						373	15	4	NaN	NaN	NaN	6.1467E-07	1	22262	110.44	106.46	1	95902			7653	1136	6476	6649	7653	7653		
GLWHEEMK	8	Unmodified	_GLWHEEMK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.244752	1028.47495	0.93035	0.00047936	2.9224	0.0015058	3.8528	0.0019851	515.245973568654	5.2125	0.14192	5.2125	5.177	5.3189	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	361.331788898403	0	9.07151943619607						266	17	3	NaN	NaN	NaN	0.01001	1	4945	69.905	59.826	1	81223			7654	828	6477	6650	7654	7654		
GLYCYELDEK	10	Unmodified	_GLYCYELDEK_			0	0	0	CON__Q3ZBS7	CON__Q3ZBS7	CON__Q3ZBS7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.289553	1288.56455	1.3283	0.00085716	1.4975	0.00096634	2.8259	0.0018235	645.290610127354	8.7866	0.12422	8.7866	8.7511	8.8753	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.900601869422	0	8.1720122674547						201	15	2	NaN	NaN	NaN	0.034525	1	12009	55.235	52.867	1	86863		+	7655	43	6478	6651	7655	7655		
GLYDGPVCEVSVTPK	15	Unmodified	_GLYDGPVCEVSVTPK_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.900531	1619.78651	3.0829	0.0024999	-0.58416	-0.0004737	2.4988	0.0020262	810.900277556292	10.791	0.16849	10.791	10.729	10.897	0	351	64	1.08996939197032	0.042115034279625	1.08996939197032	440.284545646471	0	17.0120361812831						589	20	5	NaN	NaN	NaN	4.6706E-06	1	22176	66.619	61.468	1	159750			7656	1889	6479	6652	7656	7656		
GLYSDTELQQCLAAAQAASQHVFR	24	Unmodified	_GLYSDTELQQCLAAAQAASQHVFR_			0	0	0	Q9NQT4	Q9NQT4	Q9NQT4	EXOSC5	Exosome complex component RRP46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	888.766009	2663.2762	0.82547	0.00073365	2.8613	0.002543	3.6868	0.0032767	889.436884174686	17.051	0.088707	17.051	16.998	17.087	0	294	25	1.12800004657306	0.0159941760224986	1.12800004657306	681.19318619436	0	9.65879723003502						174	11	4	NaN	NaN	NaN	5.2808E-13	1	37481	112.06	100.14	1	31881			7657	3002	6480	6653	7657	7657		
GMAFLHTLEPLIPR	14	Unmodified	_GMAFLHTLEPLIPR_			0	0	0	Q13418	Q13418	Q13418	ILK	Integrin-linked protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.297316	1593.87012	-1.6045	-0.00085407	-2.8853	-0.0015359	-4.4898	-0.0023899	532.295397322499	16.475	0.22166	16.475	16.386	16.608	0	729	19	0.835224628594324	0.0122369277826641	0.835224628594324	506.140633771335	0	7.41549778501548						201	26	3	NaN	NaN	NaN	0.00010185	1	21403	83.775	71.817	1	32355			7658	1663	6481	6654	7658	7658		
GMAFLHTLEPLIPR	14	Unmodified	_GMAFLHTLEPLIPR_			0	0	0	Q13418	Q13418	Q13418	ILK	Integrin-linked protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.297316	1593.87012	-2.155	-0.0011471	-0.93288	-0.00049657	-3.0879	-0.0016437	532.296846627054	16.466	0.1064	16.466	16.395	16.502	0	753	19	0.81889964927511	0.0122488425219203	0.81889964927511	496.247795279954	0	7.42271791374543						100	13	2	NaN	NaN	NaN	0.0023398	1	21405	51.531	47.285	1	19076			7659	1663	6481	6654	7659	7659		
GMDHFLYGLSDEMK	14	Unmodified	_GMDHFLYGLSDEMK_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.246181	1641.71671	-1.4165	-0.00077661	-0.58427	-0.00032033	-2.0008	-0.0010969	548.246265218498	13.815	0.062055	13.815	13.779	13.841	0	750	19	0.820941264895493	0.0122488425219203	0.820941264895493	497.360233298642	0	7.42085632047753						68	8	2	NaN	NaN	NaN	0.05907	1	22789	26.465	26.465	1	13933			7660	1966	6482	6655	7660	7660		
GMDHFLYGLSDEMK	14	Unmodified	_GMDHFLYGLSDEMK_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.865634	1641.71671	1.9174	0.0015759	1.2452	0.0010234	3.1627	0.0025993	821.866747224546	13.806	0.079786	13.806	13.77	13.85	0	282	40	1.13599383354359	0.0259780251845936	1.13599383354359	458.823769503695	0	10.4924297012038						255	10	4	NaN	NaN	NaN	5.9643E-06	1	22790	93.162	79.988	1	54245			7661	1966	6482	6655	7661	7661		
GMEELIPLVNK	11	Unmodified	_GMEELIPLVNK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.841756	1241.66896	0.67404	0.00041915	-0.81616	-0.00050752	-0.14212	-8.8376E-05	621.841818584631	14.701	0.15963	14.701	14.613	14.772	0	576	58	0.938871150116794	0.0384637307955292	0.938871150116794	380.227253198817	0	15.5771734027012						610	19	4	NaN	NaN	NaN	0.00023781	1	10676	90.761	74.882	1	182870			7662	1167	6483	6656	7662	7662		
GMEPIEVPLEENSER	15	Unmodified	_GMEPIEVPLEENSER_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.909084	1727.80361	2.2387	0.0019363	0.43353	0.00037497	2.6722	0.0023112	864.909723519074	12.13	0.13303	12.13	12.068	12.201	0	327	55	1.10599442759226	0.036051375024104	1.10599442759226	446.520820556538	0	14.554946350859						520	16	4	NaN	NaN	NaN	0.0017876	1	25256	59.731	39.841	1	150780			7663	2516	6484	6657	7663	7663		
GMGEAVQEFVDK	12	Unmodified	_GMGEAVQEFVDK_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.308277	1308.602	1.2175	0.00079783	0.94203	0.00061732	2.1595	0.0014152	655.309083801536	11.305	0.16853	11.305	11.234	11.403	0	543	28	0.961130371139249	0.0182020073361659	0.961130371139249	389.022853973558	0	7.36736352797766						290	20	4	NaN	NaN	NaN	0.00038241	1	12611	99.34	84.192	1	88633			7664	1157	6485	6658	7664	7664		
GMGGAFVLVLYDELK	15	Unmodified	_GMGGAFVLVLYDELK_			0	0	0	P12236	P12236	P12236	SLC25A6	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.426184	1610.83782	1.7926	0.0014456	-0.52059	-0.00041982	1.272	0.0010258	806.425873954866	19.774	0.070929	19.774	19.747	19.818	0	363	40	1.08195024817156	0.0260747970563766	1.08195024817156	437.065861954707	0	10.5332048955104						221	9	4	NaN	NaN	NaN	0.00020024	1	21926	73.655	0	1	47870			7665	665	6486	6659	7665	7665		
GMGGAMDLVSSAK	13	Unmodified	_GMGGAMDLVSSAK_			0	0	0	P55809	P55809	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.291573	1222.56859	1.046	0.00064048	1.3623	0.00083411	2.4083	0.0014746	612.292717402608	9.5849	0.11527	9.5849	9.5317	9.647	0	552	34	0.955063035883597	0.0222530586923161	0.955063035883597	386.851130390564	0	9.01366777513863						406	14	5	NaN	NaN	NaN	0.0019488	1	10081	69.276	61.093	1	148710			7666	1279	6487	6660	7666	7666		
GMGLSMGTMICGWDK	15	Unmodified	_GMGLSMGTMICGWDK_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.356064	1642.69758	1.255	0.0010321	0.17417	0.00014323	1.4292	0.0011753	822.356520077727	15.934	0.13301	15.934	15.908	16.041	0	354	34	1.08796502040166	0.0220480903949298	1.08796502040166	439.422915166783	0	8.90509894483932						336	16	4	NaN	NaN	NaN	0.00059642	1	22819	83.214	80.112	1	60987			7667	875	6488	6661	7667	7667		
GMGLVNHVFTEDNLK	15	Unmodified	_GMGLVNHVFTEDNLK_			0	0	0	Q06203	Q06203	Q06203	PPAT	Amidophosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.615373	1672.82429	-0.9242	-0.00051627	-0.82237	-0.00045939	-1.7466	-0.00097566	558.615124324261	11.181	0.088672	11.181	11.146	11.234	0	747	52	0.822982596624503	0.0346833569079855	0.822982596624503	498.519454359866	0	21.0093484747484						331	11	4	NaN	NaN	NaN	0.00044122	1	23694	57.003	49.863	1	74296			7668	1557	6489	6662	7668	7668		
GMGSLDAMDK	10	Unmodified	_GMGSLDAMDK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.725535	1023.43652	0.02752	1.411E-05	0.47882	0.0002455	0.50634	0.00025961	512.725942515314	6.5693	0.21283	6.5693	6.5161	6.7289	0	723	43	0.839303037468863	0.0285449012969368	0.839303037468863	340.699613853572	0	11.5872770801398						552	25	4	NaN	NaN	NaN	0.0044392	1	4819	72.042	57.506	1	238540			7669	666	6490	6663	7669	7669		
GMGSLDAMEK	10	Unmodified	_GMGSLDAMEK_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.73336	1037.45217	0.27898	0.00014499	-0.24804	-0.00012891	0.03094	1.6081E-05	519.733234624954	6.7289	0.11527	6.7289	6.6845	6.7998	0	711	28	0.847456455381371	0.018341368585978	0.847456455381371	343.94766939191	0	7.44400604720886						186	14	4	NaN	NaN	NaN	0.035081	1	5169	24.821	19.073	1	46221			7670	786	6491	6664	7670	7670		
GMGTVEGGDQSNPK	14	Unmodified	_GMGTVEGGDQSNPK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.809173	1375.60379	1.7416	0.0011996	-0.35463	-0.00024427	1.387	0.00095537	688.808855144023	2.8981	0.1241	2.8981	2.8627	2.9868	0	585	58	0.932794566565362	0.0384637307955292	0.932794566565362	377.361598624268	0	15.5604840147162						261	15	2	NaN	NaN	NaN	3.8203E-06	1	14658	101.48	91.967	1	60853			7671	1666	6492	6665	7671	7671		
GMIDGSTPTITPNPNFR	17	Unmodified	_GMIDGSTPTITPNPNFR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.446168	1816.87778	1.5139	0.0013768	-1.1007	-0.001001	0.41326	0.00037584	909.444518424023	11.811	0.09754	11.811	11.749	11.846	0	330	49	1.10399226369747	0.0320280154713002	1.10399226369747	445.538538964666	0	12.9255572600019						299	12	3	NaN	NaN	NaN	0.002197	1	27646	56.938	51.55	1	56968			7672	3048	6493	6666	7672	7672		
GMLDMCGFDTGALDVIR	17	Unmodified	_GMLDMCGFDTGALDVIR_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.928439	1869.84233	1.551	0.0014517	-0.56098	-0.00052504	0.99006	0.00092663	935.928896914616	18.417	0.079791	18.417	18.381	18.461	0	276	34	1.13998907770044	0.0219693125101945	1.13998907770044	459.967048887174	0	8.86426022763141						278	10	5	NaN	NaN	NaN	6.6776E-07	1	28921	92.747	87.653	1	78038			7673	621	6494	6667	7673	7673		
GMLDPLEVHLLDFPNIVIK	19	Unmodified	_GMLDPLEVHLLDFPNIVIK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.734259	2162.18095	-0.0085977	-6.2053E-06	-0.77746	-0.00056112	-0.78606	-0.00056733	722.067729755674	20.004	0.017727	20.004	19.995	20.013	0	558	64	0.951016745717027	0.0425302154964563	0.951016745717027	575.004484865745	0	25.7146519899929						137	3	4	NaN	NaN	NaN	0.010371	1	34212	19.637	19.238	1	30866			7674	2064	6495	6668	7674	7674		
GMSIDQALAQLEFNDK	16	Unmodified	_GMSIDQALAQLEFNDK_			0	0	0	Q9NWU5	Q9NWU5	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.432726	1778.8509	1.2524	0.0011152	1.6402	0.0014605	2.8926	0.0025756	890.434673766128	17.557	0.10639	17.557	17.53	17.637	0	189	34	1.1977968526266	0.0218879507499383	1.1977968526266	483.473553205163	0	8.83475799610505						214	13	3	NaN	NaN	NaN	3.2763E-06	1	26645	102.03	89.447	1	41041			7675	3086	6496	6669	7675	7675		
GMSLNLEPDNVGVVVFGNDK	20	Unmodified	_GMSLNLEPDNVGVVVFGNDK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.017495	2103.03065	0.013536	9.5023E-06	1.9162	0.0013452	1.9298	0.0013547	702.352456137756	17.202	0.1064	17.202	17.149	17.255	0	519	46	0.97729762293174	0.0302989286426463	0.97729762293174	591.000416283323	0	18.322647083726						255	13	3	NaN	NaN	NaN	0.0013353	1	33359	52.662	49.587	1	52192			7676	840	6497	6670	7676	7676		
GMSLNLEPDNVGVVVFGNDK	20	Unmodified	_GMSLNLEPDNVGVVVFGNDK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.5226	2103.03065	1.9986	0.0021036	1.0617	0.0011175	3.0604	0.0032211	1053.02532128751	17.202	0.3281	17.202	17.043	17.371	0	153	100	1.22165005014568	0.0655738689639465	1.22165005014568	492.513193391095	0	26.4363723495049						2028	38	6	NaN	NaN	NaN	5.73E-16	1	33360	155.96	143.28	1	933760			7677	840	6497	6670	7677	7677		
GMSLNLEPDNVGVVVFGNDK	20	Oxidation (M)	_GM(Oxidation (M))SLNLEPDNVGVVVFGNDK_	GM(1)SLNLEPDNVGVVVFGNDK	GM(60)SLNLEPDNVGVVVFGNDK	0	1	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.52006	2119.02557	1.099	0.0011655	0.25202	0.00026728	1.351	0.0014328	1060.52065399398	15.615	0.18612	15.615	15.553	15.739	0	144	61	1.22760721615852	0.0397226298614595	1.22760721615852	494.890343800761	0	16.0135470776424						498	22	4	NaN	NaN	NaN	0.0050501	1	33605	59.997	41.466	1	166260			7678	840	6497	6671	7678	7678	282	
GMSVSDLADK	10	Unmodified	_GMSVSDLADK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.744782	1021.47501	-0.21129	-0.00010813	0.4213	0.0002156	0.21001	0.00010747	511.744567498001	6.9771	0.19514	6.9771	6.9151	7.1102	0	729	46	0.835224628594324	0.0305816988053002	0.835224628594324	339.052698307791	0	12.4143938574031						385	23	3	NaN	NaN	NaN	0.017019	1	4764	41.796	35.105	1	92335			7679	1915	6498	6672	7679	7679		
GMTLVTPLQLLLFASK	16	Unmodified	_GMTLVTPLQLLLFASK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.507509	1731.00046	1.5934	0.0013807	-1.4187	-0.0012294	0.17462	0.00015131	866.506637786927	20.19	0.088694	20.19	20.155	20.244	0	294	58	1.12800004657306	0.0379783412948009	1.12800004657306	455.39841596021	0	15.3326912698211						232	11	4	NaN	NaN	NaN	0.00011425	1	25366	69.327	68.588	1	162670			7680	1575	6499	6673	7680	7680		
GMTLVTPLQLLLFASK	16	Oxidation (M)	_GM(Oxidation (M))TLVTPLQLLLFASK_	GM(1)TLVTPLQLLLFASK	GM(44)TLVTPLQLLLFASK	0	1	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.504966	1746.99538	1.5829	0.0013843	-1.4274	-0.0012483	0.15553	0.00013601	874.504325833338	20.128	0.044338	20.128	20.119	20.164	0	297	43	1.12600091227925	0.0279936646882595	1.12600091227925	454.558254387595	0	11.300835741642						155	6	4	NaN	NaN	NaN	0.0058656	1	25817	43.613	40.528	1	83203			7681	1575	6499	6674	7681	7681	547	
GMTSESDSIGLTPGEK	16	Unmodified	_GMTSESDSIGLTPGEK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.87471	1607.73487	3.4764	0.0027981	-2.0877	-0.0016803	1.3887	0.0011177	804.873082279676	7.6777	0.22187	7.6777	7.5801	7.802	0	417	37	1.04580932352505	0.0241272072846639	1.04580932352505	422.473289615817	0	9.746614800141						504	26	5	NaN	NaN	NaN	2.3616E-24	1	21839	183	163.68	1	154730			7682	1218	6500	6675	7682	7682		
GMTSLQCDCTEK	12	Unmodified	_GMTSLQCDCTEK_			0	0	0	Q9BTE7	Q9BTE7	Q9BTE7	DCUN1D5	DCN1-like protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.291444	1428.56834	2.5375	0.001815	-1.2652	-0.00090497	1.2723	0.00091008	715.291087476451	4.4056	0.13299	4.4056	4.3701	4.5031	0	513	28	0.981336640919867	0.0181768396345002	0.981336640919867	396.85278571781	0	7.35071854418442						267	16	4	NaN	NaN	NaN	0.018178	1	16344	37.749	33.222	1	73914			7683	2736	6501	6676	7683	7683		
GNAAWQEQLK	10	Unmodified	_GNAAWQEQLK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.790912	1143.56727	1.4018	0.00080293	-1.2669	-0.00072567	0.13489	7.7262E-05	572.79075266035	6.3742	0.3192	6.3742	6.3033	6.6225	0	609	55	0.916577990479294	0.0365075402693392	0.916577990479294	371.548844209128	0	14.7988873100675						931	37	4	NaN	NaN	NaN	0.00029684	1	7882	90.761	57.366	1	347570			7684	565	6502	6677	7684	7684		
GNAGGIQPDLLISLTAPK	18	Unmodified	_GNAGGIQPDLLISLTAPK_			0	0	0	Q8NCW5	Q8NCW5	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.996351	1763.97815	1.4028	0.0012387	0.8986	0.00079346	2.3014	0.0020322	882.997325047757	16.812	0.15073	16.812	16.759	16.91	0	318	97	1.11199926528787	0.0639855820061774	1.11199926528787	448.871856862832	0	25.8285485468613						958	18	4	NaN	NaN	NaN	1.2383E-06	1	26250	113.86	107.12	1	250810			7685	2302	6503	6678	7685	7685		
GNAIYNLLPDIISR	14	Unmodified	_GNAIYNLLPDIISR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.933022	1557.85149	0.8435	0.00065788	-0.64205	-0.00050076	0.20145	0.00015712	780.434036783138	18.568	0.13301	18.568	18.497	18.63	0	444	58	1.02770517576159	0.0382146049252179	1.02770517576159	415.273321484251	0	15.4416911491599						480	16	4	NaN	NaN	NaN	1.5092E-05	1	20303	84.309	64.127	1	127600			7686	1794	6504	6679	7686	7686		
GNAMVEEGHFAAEDVK	16	Unmodified	_GNAMVEEGHFAAEDVK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.594638	1702.76208	-0.56276	-0.00031998	1.2796	0.00072757	0.71683	0.00040759	568.595546983083	7.0569	0.11538	7.0569	7.0214	7.1368	0	747	88	0.822982596624503	0.0591493190819201	0.822982596624503	498.447515638532	0	35.8243676950387						460	14	4	NaN	NaN	NaN	0.00047211	1	24573	61.042	53.041	1	94439			7687	1703	6505	6680	7687	7687		
GNAMVEEGHFAAEDVK	16	Unmodified	_GNAMVEEGHFAAEDVK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.388319	1702.76208	2.0726	0.0017667	-0.50038	-0.00042652	1.5722	0.0013401	852.388152743949	7.0569	0.10651	7.0569	7.0214	7.128	0	249	67	1.15795408347545	0.0439174989360049	1.15795408347545	467.553102454115	0	17.7327954299578						487	13	4	NaN	NaN	NaN	3.1871E-12	1	24574	169.52	148.43	1	143710			7688	1703	6505	6680	7688	7688		
GNDISSGTVLSDYVGSGPPK	20	Unmodified	_GNDISSGTVLSDYVGSGPPK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.65321	1948.9378	0.0044734	2.9106E-06	0.49327	0.00032095	0.49775	0.00032386	650.987739208643	12.192	0.10644	12.192	12.157	12.263	0	621	40	0.908462957275599	0.0263939831579142	0.908462957275599	549.658662620312	0	15.9694805028807						200	13	3	NaN	NaN	NaN	0.025985	1	30695	18.361	15.646	1	41547			7689	903	6506	6681	7689	7689		
GNDISSGTVLSDYVGSGPPK	20	Unmodified	_GNDISSGTVLSDYVGSGPPK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.476177	1948.9378	1.0124	0.00098755	-0.2898	-0.00028269	0.72258	0.00070486	975.475640463536	11.926	0.10644	11.926	11.855	11.961	0	231	37	1.16991841121525	0.0239187954987381	1.16991841121525	471.901935307582	0	9.64795987299323						250	13	3	NaN	NaN	NaN	2.2326E-05	1	30696	55.866	54.156	1	46118			7690	903	6506	6681	7690	7690		
GNDISSGTVLSDYVGSGPPK	20	Unmodified	_GNDISSGTVLSDYVGSGPPK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.476177	1948.9378	1.401	0.0013667	-0.20024	-0.00019533	1.2008	0.0011713	975.476414484482	12.201	0.1685	12.201	12.148	12.316	0	114	115	1.24744674793813	0.0753490159961345	1.24744674793813	503.174006433943	0	30.3930138278822						870	20	5	NaN	NaN	NaN	4.2586E-11	1	30697	147.14	135.46	1	230300			7691	903	6506	6681	7691	7691		
GNDISSGTVLSDYVGSGPPK	20	Unmodified	_GNDISSGTVLSDYVGSGPPK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.476177	1948.9378	2.4025	0.0023436	0.25735	0.00025104	2.6598	0.0025946	975.977962518603	12.192	0.31036	12.192	12.121	12.431	0	231	109	1.16991841121525	0.0717466250523344	1.16991841121525	471.901933480098	0	28.9399421004914						2715	36	6	NaN	NaN	NaN	3.6312E-47	1	30698	221.46	216.37	1	2092200			7692	903	6506	6681	7692	7692		
GNDTFVTLDEILR	13	Unmodified	_GNDTFVTLDEILR_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.885738	1491.75692	0.55524	0.0004147	-1.3097	-0.0009782	-0.75447	-0.0005635	747.385022808437	17.646	0.21279	17.646	17.557	17.77	0	447	43	1.02569221487577	0.0281950841620375	1.02569221487577	414.621663058634	0	11.3974665263088						339	25	4	NaN	NaN	NaN	0.00036296	1	18296	86.243	79.552	1	92130			7693	1157	6507	6682	7693	7693		
GNDTPLALESTNTEK	15	Unmodified	_GNDTPLALESTNTEK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.386299	1588.75804	2.5042	0.0019918	-1.5605	-0.0012412	0.94367	0.00075058	795.385214892609	7.394	0.14185	7.394	7.3319	7.4738	0	408	43	1.0518390438467	0.028132878019673	1.0518390438467	424.952449107934	0	11.3659361523542						579	17	6	NaN	NaN	NaN	0.00014808	1	21236	85.813	61.978	1	191390			7694	2149	6508	6683	7694	7694		
GNDVAFHFNPR	11	Unmodified	_GNDVAFHFNPR_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.207266	1272.59997	-1.0965	-0.00046624	-0.47186	-0.00020064	-1.5683	-0.00066687	425.207044879621	7.4383	0.13298	7.4383	7.3851	7.5181	0	852	34	0.751366682244005	0.0225611942508325	0.751366682244005	456.310688463575	0	13.7015844918907						273	16	3	NaN	NaN	NaN	0.038425	1	11562	18.336	16.177	1	75381			7695	745	6509	6684	7695	7695		
GNEIVLSAGSTPR	13	Unmodified	_GNEIVLSAGSTPR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.846416	1299.67828	1.9531	0.0012712	-1.3458	-0.00087594	0.60728	0.00039525	650.845232214689	7.1811	0.133	7.1811	7.128	7.261	0	486	79	0.999498404980629	0.0524202357798278	0.999498404980629	404.581556733382	0	21.2189038926426						628	16	3	NaN	NaN	NaN	0.00026746	1	12345	90.689	65.435	1	212910			7696	1737	6510	6685	7696	7696		
GNFTLPEVAECFDEITYVELQK	22	Unmodified	_GNFTLPEVAECFDEITYVELQK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	868.084233	2601.23087	1.1058	0.00095991	-0.42809	-0.00037162	0.67769	0.00058829	868.418084016032	20.022	0.070933	20.022	19.995	20.066	0	384	46	1.06790610341098	0.0301195105360905	1.06790610341098	644.982656434354	0	18.1912640577857						243	9	6	NaN	NaN	NaN	1.4103E-06	1	37246	111.75	110.94	1	88188			7697	1509	6511	6686	7697	7697		
GNFYEASDWFK	11	Unmodified	_GNFYEASDWFK_			0	0	0	Q6PD62	Q6PD62	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.30131	1362.58807	0.97516	0.00066535	1.5056	0.0010273	2.4807	0.0016926	682.301097876161	14.365	0.088648	14.365	14.32	14.409	0	528	37	0.971237000454584	0.0242441707123356	0.971237000454584	392.950802092384	0	9.80889970523981						180	11	2	NaN	NaN	NaN	0.0084342	1	14270	36.24	22.246	1	69298			7698	2071	6512	6687	7698	7698		
GNIELASSEPQHFTTTVTR	19	Unmodified	_GNIELASSEPQHFTTTVTR_			0	0	0	Q9UPQ0	Q9UPQ0	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.683392	2087.02835	0.40633	0.00028308	0.36752	0.00025604	0.77385	0.00053913	697.018248162827	8.973	0.070951	8.973	8.9375	9.0085	0	633	55	0.900343422309015	0.0365227258333037	0.900343422309015	544.491328860281	0	22.0874691032617						244	9	4	NaN	NaN	NaN	3.1024E-05	1	33133	65.212	64.033	1	48771			7699	3314	6513	6688	7699	7699		
GNILIPGINEAVAAVTEEEHK	21	Unmodified	_GNILIPGINEAVAAVTEEEHK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.390097	2203.14846	0.68379	0.00050285	-0.66758	-0.00049093	0.01621	1.192E-05	735.724154215191	17.654	0.12414	17.654	17.61	17.734	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	605.464952684884	0	15.8485779881532						584	15	5	NaN	NaN	NaN	0.00089428	1	34720	33.5	25.5	1	236530			7700	2577	6514	6689	7700	7700		
GNINICLMGDPGVAK	15	Unmodified	_GNINICLMGDPGVAK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.889443	1557.76433	1.4628	0.0011408	1.4976	0.0011679	2.9604	0.0023088	780.392907822164	12.192	0.23945	12.192	12.086	12.325	0	396	67	1.05987478976334	0.0442088234641178	1.05987478976334	428.272566221649	0	17.8638330277157						656	28	4	NaN	NaN	NaN	4.0537E-06	1	20289	99.589	94.76	1	159850			7701	952	6515	6690	7701	7701		
GNLEVLLFTIQSK	13	Unmodified	_GNLEVLLFTIQSK_			0	0	0	Q01082;O15020	Q01082;O15020	Q01082	SPTBN1;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.419217	1460.82388	0.32129	0.000235	1.3033	0.00095329	1.6246	0.0011883	731.419914539838	18.018	0.079822	18.018	17.991	18.071	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.58154896076	0	7.30363137669912						155	10	3	NaN	NaN	NaN	2.7947E-07	1	17305	112.7	93.447	1	42163			7702	1511;137	6516	6691	7702	7702		
GNLEWLDK	8	Unmodified	_GNLEWLDK_			0	0	0	Q9BRG1	Q9BRG1	Q9BRG1	VPS25	Vacuolar protein-sorting-associated protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.750724	973.486896	-1.6639	-0.00081155	-0.22647	-0.00011046	-1.8903	-0.00092201	487.750200571757	9.6647	0.088679	9.6647	9.6204	9.709	0	795	25	0.790287188799094	0.0163659109219131	0.790287188799094	321.020864084175	0	6.64796157667791						128	11	2	NaN	NaN	NaN	0.018824	1	3701	33.426	5.6897	1	32703			7703	2706	6517	6692	7703	7703		
GNLLHFPSSQGEEEK	15	Unmodified	_GNLLHFPSSQGEEEK_			0	0	0	Q12888	Q12888	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.937281	1670.79001	0.076722	4.2806E-05	-1.4138	-0.00078879	-1.337	-0.00074598	557.936397672014	8.0325	0.10656	8.0325	7.997	8.1036	0	714	40	0.845418525735192	0.0264894101708458	0.845418525735192	512.115075904143	0	16.04604806655						292	13	3	NaN	NaN	NaN	0.07059	1	23637	27.378	21.35	1	76642			7704	1602	6518	6693	7704	7704		
GNLYSFGCPEYGQLGHNSDGK	21	Unmodified	_GNLYSFGCPEYGQLGHNSDGK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.339408	2298.99639	2.1049	0.0016152	1.0372	0.00079587	3.1421	0.0024111	767.674053438968	10.374	0.12412	10.374	10.321	10.445	0	468	103	1.01159370163332	0.068521167094309	1.01159370163332	611.398369497561	0	41.4135929967621						1101	15	5	NaN	NaN	NaN	5.0215E-06	1	35631	104.15	88.052	1	376620			7705	3151	6519	6694	7705	7705		
GNMLFSLIGEGHK	13	Unmodified	_GNMLFSLIGEGHK_			0	0	0	Q8NBF2	Q8NBF2	Q8NBF2	NHLRC2	NHL repeat-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.861012	1401.70747	1.2592	0.00088375	2.5447	0.001786	3.8039	0.0026698	701.861517298943	14.143	0.088684	14.143	14.107	14.196	1.7764E-15	420	28	1.04379886199097	0.0180966528124649	1.04379886199097	422.190066313309	0	7.31963535232285						164	11	3	NaN	NaN	NaN	0.0011303	1	15503	67.548	55.59	1	48672			7706	2286	6520	6695	7706	7706		
GNPDSVSNTPEMEQR	15	Unmodified	_GNPDSVSNTPEMEQR_			0	0	0	O15381	O15381	O15381	NVL	Nuclear valosin-containing protein-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.865208	1659.71586	2.598	0.0021586	-1.4861	-0.0012347	1.1119	0.00092388	830.864458910241	4.6273	0.062076	4.6273	4.6095	4.6716	0	462	22	1.01562323939346	0.0141024087806776	1.01562323939346	410.169305677835	0	5.69539470306921						103	8	3	NaN	NaN	NaN	0.0019087	1	23319	43.613	28.638	1	19534			7707	170	6521	6696	7707	7707		
GNPTVEVDLFTSK	13	Unmodified	_GNPTVEVDLFTSK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.861731	1405.70891	1.5003	0.001056	0.52081	0.00036658	2.0211	0.0014226	703.862519425006	12.485	0.3458	12.485	12.378	12.724	0	498	88	0.991429299781895	0.0585293848466544	0.991429299781895	400.996768145504	0	23.6729882506157						2121	40	5	NaN	NaN	NaN	2.457E-17	1	15643	192.95	24.261	1	1739900			7708	544	6522	6697	7708	7708		
GNPTVEVDLHTAK	13	Unmodified	_GNPTVEVDLHTAK_			0	0	0	P13929	P13929	P13929	ENO3	Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.859523	1379.70449	2.2247	0.0015369	-0.41861	-0.0002892	1.806	0.0012477	690.85927820991	5.9751	0.15968	5.9751	5.9219	6.0815	0	441	25	1.02971785871157	0.01610257649452	1.02971785871157	416.559550997352	0	6.51409701959597						265	19	3	NaN	NaN	NaN	0.0067468	1	14809	44.598	32.002	1	74899			7709	688	6523	6698	7709	7709		
GNSIIMLEALER	12	Unmodified	_GNSIIMLEALER_			0	0	0	P62308;A8MWD9	P62308	P62308	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.360844	1344.70714	0.93213	0.00062766	-0.49899	-0.000336	0.43314	0.00029166	673.360212958439	15.154	0.24828	15.154	15.092	15.34	-1.7764E-15	498	40	0.991429299781895	0.0262300352853753	0.991429299781895	401.173934206817	0	10.6137739243057						522	29	5	NaN	NaN	NaN	3.4836E-07	1	13747	129.69	89.184	1	179960			7710	20	6524	6699	7710	7710		
GNSIIMLEALERV	13	Unmodified	_GNSIIMLEALERV_			0	0	1	P62308;A8MWD9	P62308	P62308	SNRPG;SNRPGP15	Small nuclear ribonucleoprotein G;Putative small nuclear ribonucleoprotein G-like protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.895051	1443.77555	0.68424	0.00049463	0.68892	0.00049802	1.3732	0.00099265	722.895763431346	17.938	0.19508	17.938	17.885	18.08	0	456	43	1.01965166402748	0.0281950841620375	1.01965166402748	412.305731572307	0	11.4009472178514						729	23	5	NaN	NaN	NaN	1.0732E-06	1	16794	145.95	110.99	1	410260			7711	20	6525	6700	7711	7711		
GNSLTLIDLPGHESLR	16	Unmodified	_GNSLTLIDLPGHESLR_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.644209	1720.9108	-0.3742	-0.00021503	-0.33946	-0.00019507	-0.71366	-0.0004101	574.644237776034	12.626	0.10641	12.626	12.564	12.671	0	672	49	0.873923798053065	0.0325458093400007	0.873923798053065	529.255545179626	0	19.7100137379579						327	13	4	NaN	NaN	NaN	0.00014469	1	25088	55.604	55.394	1	92599			7712	3439	6526	6701	7712	7712		
GNTAAQMAQILSFNK	15	Unmodified	_GNTAAQMAQILSFNK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.406315	1592.79808	1.6086	0.0012827	-0.62662	-0.00049967	0.98199	0.00078305	797.406199698633	14.435	0.12415	14.435	14.391	14.515	0	390	43	1.06389100039157	0.0281134808149035	1.06389100039157	429.812123265249	0	11.3578504536491						391	15	4	NaN	NaN	NaN	3.044E-12	1	21355	196.38	183.79	1	135080			7713	961	6527	6702	7713	7713		
GNTLLLQHLK	10	Unmodified	_GNTLLLQHLK_			0	0	0	Q7Z7E8	Q7Z7E8	Q7Z7E8	UBE2Q1	Ubiquitin-conjugating enzyme E2 Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.842948	1135.67134	0.81295	0.00046244	1.6014	0.00091096	2.4144	0.0013734	568.844193374603	7.5447	0.08866	7.5447	7.5092	7.5979	0	552	22	0.955063035883597	0.0141610361284813	0.955063035883597	387.181397071551	0	5.74086688124567						114	11	3	NaN	NaN	NaN	0.044677	1	7698	31.952	24.306	1	24949			7714	2151	6528	6703	7714	7714		
GNTMQQFLQK	10	Unmodified	_GNTMQQFLQK_			0	0	0	Q14320	Q14320	Q14320	FAM50A	Protein FAM50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.800423	1193.58629	0.55079	0.00032926	0.20696	0.00012372	0.75775	0.00045298	597.800556427578	8.5293	0.12414	8.5293	8.4672	8.5914	0	600	31	0.922661313351899	0.0202735302015807	0.922661313351899	373.828010873966	0	8.21407959668039						117	15	2	NaN	NaN	NaN	0.025729	1	9257	36.211	26.818	1	24852			7715	1747	6529	6704	7715	7715		
GNVDEELSK	9	Unmodified	_GNVDEELSK_			0	0	0	P41236	P41236	P41236	PPP1R2	Protein phosphatase inhibitor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.740554	989.466554	-0.14956	-7.4144E-05	1.8527	0.00091848	1.7032	0.00084433	495.741674857294	3.439	0.19519	3.439	3.3947	3.5898	0	765	31	0.810730346695089	0.0204289410933094	0.810730346695089	329.250934438741	0	8.29652913818433						283	23	2	NaN	NaN	NaN	0.028657	1	4033	36.211	26.132	1	68207			7716	1033	6530	6705	7716	7716		
GNVGFVFTK	9	Unmodified	_GNVGFVFTK_			0	0	0	P05388	P05388	P05388	RPLP0	60S acidic ribosomal protein P0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.763635	967.512717	0.13257	6.4263E-05	-0.74183	-0.00035961	-0.60926	-0.00029535	484.763325277511	9.647	0.27488	9.647	9.576	9.8509	0	720	55	0.841341816837976	0.0366954931166669	0.841341816837976	341.789049743825	0	14.9072796231189						616	32	3	NaN	NaN	NaN	0.011207	1	3583	65.156	50.621	1	398630			7717	530	6531	6706	7717	7717		
GNVGVVLFNFGK	12	Unmodified	_GNVGVVLFNFGK_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.84823	1249.68191	1.4661	0.00091755	-1.3854	-0.00086707	0.080669	5.0486E-05	625.847521828468	15.5	0.18634	15.5	15.437	15.624	0	555	103	0.953040030838688	0.0687109098914769	0.953040030838688	385.93820235812	0	27.8248176234224						1246	22	5	NaN	NaN	NaN	3.2776E-08	1	10919	142.04	118.99	1	670070			7718	946	6532	6707	7718	7718		
GNVPSSELQIYTWMDATLK	19	Unmodified	_GNVPSSELQIYTWMDATLK_			0	0	0	O00422	O00422	O00422	SAP18	Histone deacetylase complex subunit SAP18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.0328	2152.05106	0.79552	0.0008568	-0.94257	-0.0010152	-0.14705	-0.00015838	1077.53283834425	18.789	0.097563	18.789	18.754	18.851	0	156	43	1.21966378336455	0.0278058342330012	1.21966378336455	491.638943943246	0	11.2083601761648						287	12	4	NaN	NaN	NaN	0.030252	1	34063	30.959	29.59	1	48128			7719	77	6533	6708	7719	7719		
GNVQVVIPFLTESYSSSQDPPEK	23	Unmodified	_GNVQVVIPFLTESYSSSQDPPEK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1261.12648	2520.2384	0.76528	0.00096512	-0.70076	-0.00088375	0.064524	8.1373E-05	1261.62722681313	17.592	0.15959	17.592	17.504	17.663	0	66	64	1.27913350869533	0.0415803393811986	1.27913350869533	515.127461515639	0	16.7450657251895						725	19	4	NaN	NaN	NaN	1.7974E-06	1	36920	57.62	54.874	1	141980			7720	804	6534	6709	7720	7720		
GNVQVVIPFLTESYSSSQDPPEK	23	Unmodified	_GNVQVVIPFLTESYSSSQDPPEK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.086743	2520.2384	1.1124	0.00093565	-0.79488	-0.00066856	0.31755	0.00026709	841.420385680222	17.583	0.18622	17.583	17.486	17.672	0	456	139	1.01965166402748	0.0927180249124712	1.01965166402748	615.943627167924	0	56.0084179560506						1507	22	4	NaN	NaN	NaN	1.9993E-09	1	36921	96.453	93.378	1	277600			7721	804	6534	6709	7721	7721		
GNWDEQFDK	9	Unmodified	_GNWDEQFDK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.743628	1137.4727	0.59876	0.00034114	0.66042	0.00037627	1.2592	0.00071741	569.743892230189	7.1368	0.21281	7.1368	7.0836	7.2964	0	678	40	0.869855008346864	0.026448974146953	0.869855008346864	352.631471543392	0	10.7221785064829						462	25	4	NaN	NaN	NaN	0.0086076	1	7721	65.156	51.161	1	209000			7722	961	6535	6710	7722	7722		
GPAAAQGSAAAPAEPK	16	Unmodified	_GPAAAQGSAAAPAEPK_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.357148	1392.69974	2.3442	0.0016348	-1.2359	-0.00086184	1.1084	0.00077292	697.356254300547	3.2262	0.088681	3.2262	3.1996	3.2883	0	525	43	0.973257487423603	0.0282809550509913	0.973257487423603	393.682762617622	0	11.4396494841382						157	11	2	NaN	NaN	NaN	0.0001698	1	15236	66.619	59.929	1	33759			7723	3216	6536	6711	7723	7723		
GPAAIEECCNWFHK	14	Unmodified	_GPAAIEECCNWFHK_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.585308	1717.7341	-0.39691	-0.00022766	-0.61676	-0.00035376	-1.0137	-0.00058142	573.585085094953	9.7711	0.070942	9.7711	9.7356	9.8066	0	741	31	0.827064408645228	0.0204119004973387	0.827064408645228	500.884501670132	0	12.3617997605497						191	9	4	NaN	NaN	NaN	9.6437E-06	1	24981	74.849	60.486	1	36940			7724	971	6537	6712	7724	7724		
GPADSLSTAAGAAELSAEGAGK	22	Unmodified	_GPADSLSTAAGAAELSAEGAGK_			0	0	0	Q7Z5L9	Q7Z5L9	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.971258	1929.92796	1.7711	0.0017109	-4.1687	-0.0040268	-2.3976	-0.002316	965.968507560201	11.66	0.22175	11.66	11.518	11.74	0	246	55	1.1599488233373	0.0358880628885423	1.1599488233373	467.913168051676	0	14.4769293813342						755	26	4	NaN	NaN	NaN	0.00079563	1	30289	62.711	60.727	1	159800			7725	2146	6538	6713	7725	7725		
GPAFVNPLIPESPEEEELFR	20	Unmodified	_GPAFVNPLIPESPEEEELFR_			0	0	0	Q9Y305	Q9Y305	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1135.57061	2269.12666	0.70515	0.00080075	-1.0276	-0.0011669	-0.3224	-0.00036611	1136.0708847544	18.444	0.11531	18.444	18.381	18.497	0	90	64	1.26329880838669	0.0415974282818468	1.26329880838669	509.059425469213	0	16.7621174037171						496	14	4	NaN	NaN	NaN	0.0059965	1	35361	22.395	20.547	1	100110			7726	3361	6539	6714	7726	7726		
GPAGDATVASEK	12	Unmodified	_GPAGDATVASEK_			0	0	0	Q15758	Q15758	Q15758	SLC1A5	Neutral amino acid transporter B(0)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.772385	1101.53022	1.0416	0.00057472	-1.759	-0.00097058	-0.71742	-0.00039585	551.772526289713	2.5434	0.26606	2.5434	2.4813	2.7474	0	699	40	0.85560534332665	0.0264710186728029	0.85560534332665	346.990300954844	0	10.7353078232828						527	31	3	NaN	NaN	NaN	0.00053675	1	6751	101.82	90.457	1	118960			7727	1866	6540	6715	7727	7727		
GPAVGIDLGTTYSCVGVFQHGK	22	Unmodified	_GPAVGIDLGTTYSCVGVFQHGK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.044044	2262.1103	1.1824	0.00089273	-5.8783	-0.0044383	-4.6959	-0.0035456	755.373286003181	14.347	0.16845	14.347	14.249	14.418	0	462	28	1.01562323939346	0.0181266605748145	1.01562323939346	613.893898593354	0	10.9566676865301						190	20	2	NaN	NaN	NaN	3.7176E-06	1	35295	105.78	100.16	1	94120			7728	640	6541	6716	7728	7728		
GPAVGIDLGTTYSCVGVFQHGK	22	Unmodified	_GPAVGIDLGTTYSCVGVFQHGK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1132.06243	2262.1103	0.67544	0.00076464	-0.82544	-0.00093445	-0.15	-0.00016981	1132.56345422831	13.629	0.088665	13.629	13.593	13.682	0	57	37	1.28506705146927	0.0237357992718255	1.28506705146927	517.840941384312	0	9.56476833281033						233	11	4	NaN	NaN	NaN	2.3921E-11	1	35296	111.98	110.25	1	41717			7729	640	6541	6716	7729	7729		
GPAVGIDLGTTYSCVGVFQHGK	22	Unmodified	_GPAVGIDLGTTYSCVGVFQHGK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.044044	2262.1103	1.7614	0.0013299	0.25618	0.00019343	2.0176	0.0015234	755.378431237107	13.629	0.50536	13.629	13.496	14.001	-1.7764E-15	465	205	1.01360860968299	0.137289389832819	1.01360860968299	612.676131851989	0	82.9846269097876						2701	58	7	NaN	NaN	NaN	4.4908E-60	1	35297	275.23	243.32	1	2723200			7730	640	6541	6716	7730	7730		
GPCIIYNEDNGIIK	14	Unmodified	_GPCIIYNEDNGIIK_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.400698	1604.78684	2.8965	0.002327	-0.042359	-3.4031E-05	2.8541	0.002293	803.401054383477	10.95	0.25717	10.95	10.853	11.11	0	354	58	1.08796502040166	0.0380988236514024	1.08796502040166	439.509722203626	0	15.3909391251668						967	30	5	NaN	NaN	NaN	0.0061935	1	21737	54.27	50.534	1	415720			7731	988	6542	6717	7731	7731		
GPCVSENEIGTGGTCQWK	18	Unmodified	_GPCVSENEIGTGGTCQWK_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.432932	1978.85131	2.5168	0.0024927	0.86172	0.00085348	3.3785	0.0033462	990.434913227355	8.2987	0.10638	8.2987	8.2544	8.3608	0	210	91	1.18386433251387	0.0598216997176928	1.18386433251387	477.476159312233	0	24.127287764537						413	13	3	NaN	NaN	NaN	4.0967E-10	1	31260	114.5	93.89	1	75106			7732	1850	6543	6718	7732	7732		
GPDALTLLEYTETR	14	Unmodified	_GPDALTLLEYTETR_			0	0	0	Q96JB5	Q96JB5	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.904128	1577.7937	1.5622	0.001234	-1.8288	-0.0014446	-0.26664	-0.00021062	790.404464389001	16.129	0.21284	16.129	16.041	16.253	0	369	43	1.07793901817685	0.0280824869885468	1.07793901817685	435.523226427211	0	11.346259049086						531	25	4	NaN	NaN	NaN	1.3773E-05	1	20910	103.76	87.473	1	119900			7733	2566	6544	6719	7733	7733		
GPDGLTAFEATDNQAIK	17	Unmodified	_GPDGLTAFEATDNQAIK_			0	0	0	P58546	P58546	P58546	MTPN	Myotrophin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.288091	1746.84244	0.14754	8.6059E-05	0.077649	4.5292E-05	0.22519	0.00013135	583.287891367906	11.199	0.12414	11.199	11.146	11.27	0	651	79	0.888155670855968	0.0528796263911573	0.888155670855968	537.81075380395	0	32.0205484956156						608	15	4	NaN	NaN	NaN	2.8131E-05	1	25799	148.76	129.2	1	131850			7734	1300	6545	6720	7734	7734		
GPDGLTAFEATDNQAIK	17	Unmodified	_GPDGLTAFEATDNQAIK_			0	0	0	P58546	P58546	P58546	MTPN	Myotrophin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.428498	1746.84244	2.8209	0.0024667	-1.6077	-0.0014058	1.2132	0.0010608	874.427070597092	11.199	0.3636	11.199	11.075	11.438	0	315	73	1.11400032671325	0.0480288131419349	1.11400032671325	449.714017220875	0	19.3888906335753						1753	42	5	NaN	NaN	NaN	3.1559E-11	1	25800	168.43	157.45	1	979020			7735	1300	6545	6720	7735	7735		
GPDNSMGFGAER	12	Unmodified	_GPDNSMGFGAER_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.266944	1236.51934	1.263	0.00078211	1.5886	0.00098375	2.8515	0.0017659	619.267626305172	5.7889	0.1596	5.7889	5.7445	5.9041	0	624	43	0.906433495720521	0.0284065601691176	0.906433495720521	367.107341697208	0	11.5047125240635						386	19	4	NaN	NaN	NaN	9.8487E-07	1	10507	112.93	105.77	1	104110			7736	344	6546	6721	7736	7736		
GPEEINEELMK	11	Unmodified	_GPEEINEELMK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.80811	1287.60167	1.7259	0.0011129	1.0243	0.00066049	2.7502	0.0017734	644.808287625404	8.68	0.35488	8.68	8.5116	8.8665	0	543	55	0.961130371139249	0.0364065447798646	0.961130371139249	389.089133057913	0	14.7382617087015						948	41	3	NaN	NaN	NaN	2.3708E-07	1	11985	140.05	123.59	1	515920			7737	1098	6547	6722	7737	7737		
GPELLTMWFGESEANVR	17	Unmodified	_GPELLTMWFGESEANVR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.4671	1934.91965	1.6522	0.0016001	-0.85058	-0.00082376	0.80159	0.00077632	968.968117970082	18.976	0.088662	18.976	18.931	19.02	0	267	49	1.14597988355104	0.0319443832387405	1.14597988355104	462.269695543474	0	12.8858460135779						248	11	3	NaN	NaN	NaN	5.533E-07	1	30419	91.939	86.858	1	53398			7738	1265	6548	6723	7738	7738		
GPELLTMWFGESEANVR	17	Oxidation (M)	_GPELLTM(Oxidation (M))WFGESEANVR_	GPELLTM(1)WFGESEANVR	GPELLTM(54)WFGESEANVR	0	1	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.464558	1950.91456	1.6924	0.0016526	4.9083	0.0047928	6.6007	0.0064454	976.971246669744	18.452	0.22172	18.452	18.328	18.55	0	237	49	1.16593139812432	0.0318961142140304	1.16593139812432	470.290334726125	0	12.8656233585534						744	26	5	NaN	NaN	NaN	0.010232	1	30732	54.199	49.105	1	231910			7739	1265	6548	6724	7739	7739	449	
GPEVDVSGPK	10	Unmodified	_GPEVDVSGPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.753464	983.492375	0.50273	0.00024772	-0.30608	-0.00015082	0.19665	9.6902E-05	492.753585685301	4.3701	0.30147	4.3701	4.2549	4.5563	0	747	40	0.822982596624503	0.0265262507146683	0.822982596624503	334.254619760667	0	10.7736444035073						366	35	3	NaN	NaN	NaN	0.0042445	1	3913	57.032	47.639	1	107510			7740	1584	6549	6725	7740	7740		
GPFELEAFYSDPQGVPYPEAK	21	Unmodified	_GPFELEAFYSDPQGVPYPEAK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1171.05479	2340.09503	0.08573	0.00010039	0.34732	0.00040673	0.43305	0.00050713	1171.5566826744	16.75	0.1064	16.75	16.706	16.812	0	66	64	1.27913350869533	0.041574645421063	1.27913350869533	515.345021133668	0	16.7498438415514						596	13	4	NaN	NaN	NaN	0.001357	1	35966	48.892	48.081	1	115770			7741	2415	6550	6726	7741	7741		
GPFLVALGK	9	Unmodified	_GPFLVALGK_			0	0	0	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.278921	900.543289	-1.0163	-0.00045862	-1.9252	-0.00086879	-2.9414	-0.0013274	451.27800795083	12.29	0.12417	12.29	12.245	12.369	0	738	55	0.829104889055312	0.0367465403567987	0.829104889055312	337.168624648499	0	14.9435621912801						373	15	3	NaN	NaN	NaN	0.0042993	1	2343	63.301	50.749	1	99723			7742	2548	6551	6727	7742	7742		
GPFLVSAPLSTIINWER	17	Unmodified	_GPFLVSAPLSTIINWER_			0	0	0	Q14839;Q12873	Q14839	Q14839	CHD4;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.519993	1899.02543	1.2913	0.0012274	0.28792	0.00027367	1.5792	0.001501	951.02178576409	19.924	0.044334	19.924	19.915	19.96	0	192	88	1.1958073123591	0.0577680774065419	1.1958073123591	482.434186614877	0	23.3058412905584						235	6	3	NaN	NaN	NaN	0.00045548	1	29587	63.908	62.198	1	72699			7743	1776	6552	6728	7743	7743		
GPFSEISAFK	10	Unmodified	_GPFSEISAFK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.779482	1081.54441	-0.0091567	-4.9609E-06	-1.826	-0.00098931	-1.8352	-0.00099427	541.778249003123	12.493	0.28372	12.493	12.325	12.609	0	663	73	0.880024865079826	0.0488322888130754	0.880024865079826	356.9750993856	0	19.8084302432667						686	33	3	NaN	NaN	NaN	0.035081	1	6240	30.918	13.523	1	154580			7744	1193	6553	6729	7744	7744		
GPFTDVVTTNLK	12	Unmodified	_GPFTDVVTTNLK_			0	0	0	O95292;Q9P0L0	O95292;Q9P0L0	Q9P0L0	VAPB;VAPA	Vesicle-associated membrane protein-associated protein B/C;Vesicle-associated membrane protein-associated protein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.34826	1290.68197	1.1237	0.00072632	-0.1531	-9.8958E-05	0.97062	0.00062736	646.348892070931	11.731	0.3991	11.731	11.518	11.917	0	501	97	0.98941132619024	0.0645707700207963	0.98941132619024	400.527816045557	0	26.1391686270597						1230	46	4	NaN	NaN	NaN	3.0126E-07	1	12102	133.76	116.29	1	588860			7745	3146;415	6554	6730	7745	7745		
GPFVEAEVPDVDLECPDAK	19	Unmodified	_GPFVEAEVPDVDLECPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.98552	2085.95649	2.0049	0.0020931	0.36105	0.00037693	2.3659	0.00247	1044.48727104473	14.223	0.15075	14.223	14.178	14.329	0	174	73	1.20774045859593	0.0477064192919123	1.20774045859593	486.931631683512	0	19.2340700539209						806	18	4	NaN	NaN	NaN	7.0564E-07	1	33115	81.908	57.744	1	343860			7746	1584	6555	6731	7746	7746		
GPGAGSALDDGR	12	Unmodified	_GPGAGSALDDGR_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.754527	1071.4945	1.2507	0.00067133	1.3078	0.00070199	2.5586	0.0013733	536.755877576136	3.306	0.17732	3.306	3.2351	3.4124	0	696	46	0.857641857947968	0.0305307631752075	0.857641857947968	347.936633681338	0	12.3860220492507						269	21	2	NaN	NaN	NaN	0.071557	1	5987	24.689	16.215	1	48768			7747	452	6556	6732	7747	7747		
GPGDTSNFDDYEEEEIR	17	Unmodified	_GPGDTSNFDDYEEEEIR_			0	0	0	P17612	P17612	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.905781	1971.79701	2.7134	0.0026778	0.27698	0.00027336	2.9903	0.0029512	986.906060153186	9.7268	0.10644	9.7268	9.6913	9.7977	0	279	43	1.13799159301878	0.0279744112588804	1.13799159301878	458.986205055414	0	11.2829206657953						319	13	3	NaN	NaN	NaN	0.00021602	1	31135	72.031	71.633	1	76877			7748	738	6557	6733	7748	7748		
GPGGSSLLIEALSNSSHK	18	Unmodified	_GPGGSSLLIEALSNSSHK_			0	0	0	Q9BSH4	Q9BSH4	Q9BSH4	TACO1	Translational activator of cytochrome c oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.307485	1752.90063	-0.40178	-0.00023517	0.48308	0.00028275	0.081299	4.7585E-05	585.308150792733	12.626	0.17734	12.626	12.547	12.724	0	684	46	0.86578508874114	0.0305265242845556	0.86578508874114	524.250295776767	0	18.4844248224282						292	21	4	NaN	NaN	NaN	8.023E-05	1	25978	73.891	59.436	1	62891			7749	2724	6558	6734	7749	7749		
GPGLAVQSGDK	11	Unmodified	_GPGLAVQSGDK_			0	0	0	Q96PK6	Q96PK6	Q96PK6	RBM14	RNA-binding protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.772188	1027.52982	1.011	0.00052041	1.4862	0.00076503	2.4971	0.0012854	514.773623834581	3.6342	0.21277	3.6342	3.5633	3.776	0	708	28	0.849494101904619	0.0183388204791043	0.849494101904619	344.818254925821	0	7.44391286628695						223	25	2	NaN	NaN	NaN	0.056445	1	4927	30.918	14.461	1	66167			7750	2596	6559	6735	7750	7750		
GPGLFFILPCTDSFIK	16	Unmodified	_GPGLFFILPCTDSFIK_			0	0	0	P27105	P27105	P27105	STOM	Erythrocyte band 7 integral membrane protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.473666	1810.93278	1.1439	0.0010369	0.31337	0.00028406	1.4573	0.001321	906.975653518317	19.978	0.03549	19.978	19.969	20.004	0	303	76	1.12200181823275	0.0499715173158064	1.12200181823275	452.817916948638	0	20.1675238043263						272	5	5	NaN	NaN	NaN	0.06976	1	27504	36.952	24.933	1	80207			7751	861	6560	6736	7751	7751		
GPGLYYVDSEGNR	13	Unmodified	_GPGLYYVDSEGNR_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.833505	1425.65246	1.8574	0.0013259	-0.13404	-9.5682E-05	1.7234	0.0012302	713.833442137454	7.8906	0.28382	7.8906	7.7221	8.0059	-1.7764E-15	513	79	0.981336640919867	0.0524564762308631	0.981336640919867	396.860564788908	0	21.2138280746375						568	33	4	NaN	NaN	NaN	0.0065094	1	16244	53.028	46.281	1	145820			7752	875	6561	6737	7752	7752		
GPGNPVPGPLAPLPDYMSEEK	21	Unmodified	_GPGNPVPGPLAPLPDYMSEEK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1083.0328	2164.05106	0.67737	0.00073361	2.9334	0.0031769	3.6107	0.0039106	1083.0375530839	14.817	0.30151	14.817	14.728	15.03	0	132	85	1.23554629282893	0.0556040797653412	1.23554629282893	498.023361954499	0	22.4128637703384						1498	35	5	NaN	NaN	NaN	0.001157	1	34240	35.182	32.635	1	412850			7753	2064	6562	6738	7753	7753		
GPGVDLPSVNLSMPK	15	Unmodified	_GPGVDLPSVNLSMPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.900334	1509.78611	1.7975	0.0013587	-0.23363	-0.0001766	1.5639	0.0011821	755.900683181518	14.329	0.20392	14.329	14.232	14.435	0	426	64	1.03977710643793	0.0422313695297207	1.03977710643793	420.269139872033	0	17.0695635035442						804	24	3	NaN	NaN	NaN	0.0278	1	18805	58.476	50.919	1	286810			7754	1584	6563	6739	7754	7754		
GPHVDVSGPDIDIEGPEGK	19	Unmodified	_GPHVDVSGPDIDIEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.977805	1916.91159	-0.10034	-6.4214E-05	0.0857	5.4846E-05	-0.014637	-9.3673E-06	639.977687690723	9.9396	0.133	9.9396	9.8686	10.002	0	714	100	0.845418525735192	0.0672237432027373	0.845418525735192	511.574463180242	0	40.6780183956823						840	16	4	NaN	NaN	NaN	9.2581E-08	1	29989	139.7	115.02	1	194620			7755	1584	6564	6740	7755	7755		
GPITSAAELNDPQSILLR	18	Unmodified	_GPITSAAELNDPQSILLR_			0	0	0	P17813	P17813	P17813	ENG	Endoglin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.015272	1894.01599	1.4259	0.0013517	-0.481	-0.000456	0.94485	0.00089573	948.014461676829	14.923	0.11526	14.923	14.861	14.976	1.7764E-15	213	34	1.18187287897418	0.0219090010853469	1.18187287897418	476.821655467473	0	8.83909458707694						251	14	4	NaN	NaN	NaN	5.6731E-07	1	29479	111.38	108.29	1	81154			7756	742	6565	6741	7756	7756		
GPLEWQDYIYK	11	Unmodified	_GPLEWQDYIYK_			0	0	0	Q8WXD5	Q8WXD5	Q8WXD5	GEMIN6	Gem-associated protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.34826	1410.68197	0.61649	0.00043546	-0.22391	-0.00015816	0.39257	0.00027729	706.347934375532	14.746	0.1419	14.746	14.693	14.834	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.323439010601	0	8.15097381480859						293	17	3	NaN	NaN	NaN	0.0083648	1	15779	46.447	44.944	1	60141			7757	2396	6566	6742	7757	7757		
GPLINSEFYTGWLDHWGQPHSTIK	24	Unmodified	_GPLINSEFYTGWLDHWGQPHSTIK_			0	0	0	P16278	P16278	P16278	GLB1	Beta-galactosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	696.594864	2782.35035	-0.42214	-0.00029406	0.035261	2.4562E-05	-0.38687	-0.00026949	696.84584390674	16.697	0.088664	16.697	16.652	16.741	0	579	37	0.936845902828289	0.024311389219916	0.936845902828289	754.17262043541	0	19.5709711266887						269	11	5	NaN	NaN	NaN	0.0070326	1	37844	11.306	11.127	1	53692			7758	725	6567	6743	7758	7758		
GPLLEEQALTK	11	Unmodified	_GPLLEEQALTK_			0	0	0	Q52LJ0	Q52LJ0	Q52LJ0	FAM98B	Protein FAM98B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.837528	1197.6605	0.93948	0.00056354	0.66124	0.00039664	1.6007	0.00096017	599.837710797797	8.831	0.20413	8.831	8.7866	8.9908	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	384.481753400316	0	9.01950564567016						383	24	3	NaN	NaN	NaN	0.0032096	1	9404	72.365	27.545	1	138790			7759	1945	6568	6744	7759	7759		
GPLLVQDVVFTDEMAHFDR	19	Unmodified	_GPLLVQDVVFTDEMAHFDR_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	730.361373	2188.06229	-0.013089	-9.5596E-06	0.32568	0.00023787	0.3126	0.00022831	730.695782856175	17.335	0.12415	17.335	17.3	17.424	0	513	61	0.981336640919867	0.0404013742155731	0.981336640919867	593.291758352955	0	24.4256673487345						581	15	5	NaN	NaN	NaN	2.0734E-05	1	34552	65.212	63.589	1	173680			7760	501	6569	6745	7760	7760		
GPLLVQDVVFTDEMAHFDRER	21	Unmodified	_GPLLVQDVVFTDEMAHFDRER_			0	0	1	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	619.308775	2473.20599	-0.71156	-0.00044068	-0.23518	-0.00014565	-0.94674	-0.00058632	619.55897955219	15.81	0.053222	15.81	15.783	15.837	0	696	25	0.857641857947968	0.0162887244469265	0.857641857947968	690.841044763051	0	13.1207674980981						95	7	3	NaN	NaN	NaN	0.00051436	1	36693	59.77	57.923	1	18769			7761	501	6570	6746	7761	7761		
GPLLVSTESHPVK	13	Unmodified	_GPLLVSTESHPVK_			0	0	0	Q9Y3A4	Q9Y3A4	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.382634	1362.75072	2.4614	0.0016796	-0.89981	-0.00061401	1.5616	0.0010656	682.381937332618	5.6736	0.18626	5.6736	5.6203	5.8066	-8.8818E-16	456	37	1.01965166402748	0.0241605388886725	1.01965166402748	412.538307815653	0	9.77505179531454						392	22	4	NaN	NaN	NaN	0.002595	1	14285	51.531	46.38	1	98865			7762	3375	6571	6747	7762	7762		
GPLMMYISK	9	Unmodified	_GPLMMYISK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.269381	1038.52421	0.92887	0.00048326	-2.5609	-0.0013324	-1.632	-0.00084909	520.26910387258	11.075	0.23943	11.075	10.986	11.225	0	678	64	0.869855008346864	0.0427015643610472	0.869855008346864	353.033557573689	0	17.3305723777945						955	28	5	NaN	NaN	NaN	0.0097464	1	5195	74.486	66.483	1	580620			7763	679	6572	6748	7763	7763		
GPNVVGPYGLLQPFADAMK	19	Unmodified	_GPNVVGPYGLLQPFADAMK_			0	0	0	P03886	P03886	P03886	MT-ND1	NADH-ubiquinone oxidoreductase chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.511311	1973.00807	1.0917	0.0010781	0.19697	0.00019451	1.2887	0.0012726	988.013131780563	19.383	0.13301	19.383	19.321	19.454	0	168	34	1.21171599086077	0.0218639303510766	1.21171599086077	488.719373487726	0	8.81834227141536						361	16	4	NaN	NaN	NaN	0.0027949	1	31174	37.146	34.252	1	73320			7764	497	6573	6749	7764	7764		
GPPPPPGDENR	11	Unmodified	_GPPPPPGDENR_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.772719	1131.53089	1.1891	0.00067396	-4.0652	-0.002304	-2.8761	-0.0016301	566.770461661683	2.4724	0.17734	2.4724	2.4281	2.6055	0	708	40	0.849494101904619	0.0264857303381943	0.849494101904619	344.399017144882	0	10.7377549489598						221	21	2	NaN	NaN	NaN	0.071529	1	7569	30.918	13.448	1	39843			7765	1667	6574	6750	7765	7765		
GPPQEEEEEEDEEEEATK	18	Unmodified	_GPPQEEEEEEDEEEEATK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.42166	2102.82876	4.2425	0.0044649	-3.4022	-0.0035806	0.84026	0.0008843	1052.91973657439	4.8489	0.40785	4.8489	4.7691	5.177	0	261	64	1.14997238118939	0.0419298952729088	1.14997238118939	463.616354810261	0	16.9042191986352						1089	47	3	NaN	NaN	NaN	0.00011841	1	33344	62.711	62.668	1	235040			7766	1201	6575	6751	7766	7766		
GPPQEEEEEEDEEEEATK	18	Unmodified	_GPPQEEEEEEDEEEEATK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.42166	2102.82876	3.8904	0.0040943	-2.6447	-0.0027833	1.2457	0.001311	1052.41867606999	4.8401	0.23942	4.8401	4.7869	5.0263	0	180	61	1.203763835057	0.0397880929127559	1.203763835057	485.302610405219	0	16.0407422047959						610	28	3	NaN	NaN	NaN	0.0028403	1	33345	51.07	51.027	1	121620			7767	1201	6575	6751	7767	7767		
GPQGYGFNLHSDK	13	Unmodified	_GPQGYGFNLHSDK_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.336215	1418.65788	2.7235	0.0019346	-2.9596	-0.0021023	-0.23612	-0.00016772	710.333420561408	6.1347	0.13301	6.1347	6.0993	6.2323	0	420	34	1.04379886199097	0.0221211851351335	1.04379886199097	422.140806416847	0	8.94641225612145						347	16	4	NaN	NaN	NaN	0.029248	1	16047	40.861	30.61	1	103870			7768	1856	6576	6752	7768	7768		
GPQITGPSLEGDLGLK	16	Unmodified	_GPQITGPSLEGDLGLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.42777	1580.84099	1.6734	0.0013244	-0.29061	-0.00023	1.3828	0.0010944	791.427593753777	13.336	0.1774	13.336	13.265	13.442	0	393	43	1.0618830335572	0.0281134808149035	1.0618830335572	429.028873104367	0	11.358590929412						482	21	3	NaN	NaN	NaN	0.00011562	1	21006	99.668	89.926	1	255700			7769	1584	6577	6753	7769	7769		
GPQLAAQNLGISLANLLLSK	20	Unmodified	_GPQLAAQNLGISLANLLLSK_			0	0	0	P08397	P08397	P08397	HMBS	Porphobilinogen deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.396635	2020.16807	-0.015006	-1.012E-05	-0.66808	-0.00045055	-0.68309	-0.00046067	674.73022220071	20.084	0.017716	20.084	20.075	20.093	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	593.602442169634	0	9.77132386833296						63	3	4	NaN	NaN	NaN	0.057888	1	31996	28.432	27.063	1	16712			7770	582	6578	6754	7770	7770		
GPQLFHMDPSGTFVQCDAR	19	Unmodified	_GPQLFHMDPSGTFVQCDAR_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.663057	2161.96734	0.73971	0.00053382	-1.0436	-0.0007531	-0.30386	-0.00021928	721.997093968288	12.467	0.23938	12.467	12.387	12.626	0	639	64	0.896281965493857	0.0426601096058868	0.896281965493857	541.911041832533	0	25.7932049636612						1550	28	7	NaN	NaN	NaN	3.099E-36	1	34197	261.94	253.58	1	1120000			7771	872	6579	6755	7771	7771		
GPQLFHMDPSGTFVQCDAR	19	Unmodified	_GPQLFHMDPSGTFVQCDAR_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.99095	2161.96734	1.278	0.0013828	1.7544	0.0018982	3.0323	0.003281	1082.4946038802	12.458	0.14185	12.458	12.361	12.502	0	108	103	1.25141139212444	0.0674452453966159	1.25141139212444	504.421362462922	0	27.1859620175363						896	17	4	NaN	NaN	NaN	0.018009	1	34200	22.039	15.049	1	185080			7772	872	6579	6755	7772	7772		
GPQLFHMDPSGTFVQCDAR	19	Oxidation (M)	_GPQLFHM(Oxidation (M))DPSGTFVQCDAR_	GPQLFHM(1)DPSGTFVQCDAR	GPQLFHM(100)DPSGTFVQCDAR	0	1	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.994696	2177.96226	1.1864	0.0008625	-0.27812	-0.00020219	0.90828	0.00066031	727.329077527715	9.7977	0.1242	9.7977	9.7534	9.8776	0	630	43	0.902373728295776	0.028418378530508	0.902373728295776	545.568691074825	0	17.181548056191						426	15	5	NaN	NaN	NaN	6.9704E-08	1	34415	104.86	96.103	1	119320			7773	872	6579	6756	7773	7773	297	
GPQNATDSYVHK	12	Unmodified	_GPQNATDSYVHK_			0	0	0	O43660	O43660	O43660	PLRG1	Pleiotropic regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.545836	1315.61568	-1.5996	-0.00070311	1.8992	0.0008348	0.2996	0.00013169	439.546937319838	2.9158	0.16847	2.9158	2.8538	3.0222	0	843	34	0.757518876820989	0.0225611942508325	0.757518876820989	459.885679229467	0	13.6967809776758						227	20	3	NaN	NaN	NaN	0.063635	1	12824	32.549	28.656	1	44514			7774	214	6580	6757	7774	7774		
GPQYGTLEK	9	Unmodified	_GPQYGTLEK_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.756007	991.497461	1.235	0.0006135	0.64731	0.00032156	1.8823	0.00093505	496.75632889897	3.98	0.12415	3.98	3.9445	4.0686	0	714	25	0.845418525735192	0.0163000411099919	0.845418525735192	343.328737792445	0	6.61952910884213						169	15	3	NaN	NaN	NaN	0.072202	1	4088	34.781	26.018	1	63668			7775	3268	6581	6758	7775	7775		
GPSGCVESLEVTCR	14	Unmodified	_GPSGCVESLEVTCR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.850515	1549.68648	1.8353	0.0014239	-0.35369	-0.00027441	1.4816	0.0011495	775.85102131983	7.589	0.18625	7.589	7.5447	7.7309	0	429	64	1.03776581230406	0.0422663641098704	1.03776581230406	419.35806850329	0	17.0797116320678						714	22	5	NaN	NaN	NaN	3.5285E-12	1	20028	185.18	173.82	1	222330			7776	1101	6582	6759	7776	7776		
GPSGLLTYTGK	11	Unmodified	_GPSGLLTYTGK_			0	0	0	Q9UHQ9	Q9UHQ9	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.298039	1092.58152	0.39811	0.00021789	0.5353	0.00029297	0.93341	0.00051085	547.298086618237	8.1922	0.1508	8.1922	8.1213	8.2721	0	672	46	0.873923798053065	0.0305053430673474	0.873923798053065	354.455194747217	0	12.3726775055858						347	18	4	NaN	NaN	NaN	5.2252E-05	1	6531	70.389	62.742	1	95285			7777	3220	6583	6760	7777	7777		
GPSGLLVYQGK	11	Unmodified	_GPSGLLVYQGK_			0	0	0	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.813856	1117.61316	1.1229	0.00062863	-1.2505	-0.00070005	-0.12758	-7.1418E-05	559.813070629749	8.352	0.16845	8.352	8.2544	8.4229	0	612	67	0.914549654013882	0.0446017870007702	0.914549654013882	370.829179101763	0	18.0850148347618						424	20	2	NaN	NaN	NaN	0.00067016	1	7207	78.816	70.633	1	137520			7778	474	6584	6761	7778	7778		
GPSGYGFNLHSDK	13	Unmodified	_GPSGYGFNLHSDK_			0	0	0	O14745	O14745	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.822941	1377.63133	2.2195	0.0015311	-0.69143	-0.00047696	1.5281	0.0010541	689.822669975653	6.1347	0.11527	6.1347	6.0904	6.2057	0	450	55	1.02367897599655	0.0362608440937691	1.02367897599655	414.122780033521	0	14.6690924738933						466	14	3	NaN	NaN	NaN	0.0047742	1	14725	46.068	33.472	1	139800			7779	116	6585	6762	7779	7779		
GPSLNPVLDYDHGSR	15	Unmodified	_GPSLNPVLDYDHGSR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.933871	1625.77978	-0.46389	-0.00025186	0.62569	0.00033971	0.1618	8.7847E-05	542.933873337345	8.9287	0.17749	8.9287	8.8487	9.0262	0	747	43	0.822982596624503	0.0285766640115467	0.822982596624503	498.637799734496	0	17.3143453153373						634	21	4	NaN	NaN	NaN	0.00011473	1	22351	97.594	90.847	1	242200			7780	1062	6586	6763	7780	7780		
GPSSEAMHVGHLIPFIFTK	19	Unmodified	_GPSSEAMHVGHLIPFIFTK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.027665	2067.06117	0.66515	0.00045898	-1.0772	-0.00074329	-0.41204	-0.00028432	690.359152070351	15.021	0.22169	15.021	14.905	15.127	1.7764E-15	522	49	0.975277694896658	0.0323166232596742	0.975277694896658	589.846175694451	0	19.5450349585786						643	26	5	NaN	NaN	NaN	0.020829	1	32834	31.767	29.666	1	167560			7781	818	6587	6764	7781	7781		
GPSSEGPEEEDGEGFSFK	18	Unmodified	_GPSSEGPEEEDGEGFSFK_			0	0	0	P84157	P84157	P84157	MXRA7	Matrix-remodeling-associated protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.892142	1883.76973	2.4556	0.0023154	-0.25319	-0.00023873	2.2024	0.0020767	942.891824440181	9.0262	0.1685	9.0262	8.973	9.1415	0	306	64	1.12000185836644	0.0420223118380454	1.12000185836644	451.877923659692	0	16.9543959939959						538	20	4	NaN	NaN	NaN	4.2099E-05	1	29223	80.379	80.257	1	103420			7782	1487	6588	6765	7782	7782		
GPSSVEDIK	9	Unmodified	_GPSSVEDIK_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.24019	930.465826	1.1503	0.00053631	-0.11128	-5.1882E-05	1.039	0.00048442	466.241128541126	3.7672	0.90453	3.7672	3.1375	4.042	0	762	94	0.812773098473386	0.0633253786492601	0.812773098473386	330.367352181358	0	25.7398254316399						1644	103	5	NaN	NaN	NaN	0.049468	1	2880	33.426	22.598	1	3276400			7783	547	6589	6766	7783	7783		
GPSWDPFR	8	Unmodified	_GPSWDPFR_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.229959	960.445365	-1.4842	-0.00071424	-0.22528	-0.00010841	-1.7095	-0.00082266	481.22980964314	11.961	0.31039	11.961	11.873	12.183	0	750	88	0.820941264895493	0.0592398617519613	0.820941264895493	333.535853985931	0	24.0682479056089						1886	36	4	NaN	NaN	NaN	2.2714E-05	1	3445	138.55	112.33	1	1923000			7784	516	6590	6767	7784	7784		
GPSYGLSAEVK	11	Unmodified	_GPSYGLSAEVK_			0	0	0	Q99439;Q15417	Q99439	Q99439	CNN2;CNN3	Calponin-2;Calponin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.287671	1106.56079	1.2142	0.00067301	2.373	0.0013153	3.5872	0.0019883	554.288798161222	6.5249	0.30148	6.5249	6.3831	6.6845	0	615	70	0.912521036363781	0.0466711740875143	0.912521036363781	370.051623845514	0	18.9264061535304						870	35	3	NaN	NaN	NaN	0.047086	1	6894	44.57	23.42	1	353510			7785	2639	6591	6768	7785	7785		
GPTEADELMK	10	Unmodified	_GPTEADELMK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.757889	1089.50123	1.3565	0.00074032	0.42667	0.00023286	1.7832	0.00097317	545.758508692419	6.1081	0.23055	6.1081	6.0372	6.2678	0	663	55	0.880024865079826	0.0366089566003003	0.880024865079826	356.942297473229	0	14.8487680240984						1008	27	5	NaN	NaN	NaN	2.9866E-05	1	6444	119.07	89.966	1	753850			7786	653	6592	6769	7786	7786		
GPTEADELMK	10	Oxidation (M)	_GPTEADELM(Oxidation (M))K_	GPTEADELM(1)K	GPTEADELM(91)K	0	1	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.755346	1105.49614	1.3883	0.00076876	4.0162	0.002224	5.4045	0.0029928	553.758193795147	3.6785	0.20392	3.6785	3.6253	3.8292	0	669	49	0.875957769340875	0.0325548466595607	0.875957769340875	355.22844459745	0	13.2020149232605						443	24	3	NaN	NaN	NaN	0.0011242	1	6854	90.761	79.401	1	121540			7787	653	6592	6770	7787	7787	194	
GPTISLTQIV	10	Unmodified	_GPTISLTQIV_			0	0	0	Q15904	Q15904	Q15904	ATP6AP1	V-type proton ATPase subunit S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.802957	1027.59136	-1.3968	-0.0007191	-0.44042	-0.00022673	-1.8373	-0.00094583	514.802666244688	16.83	0.12414	16.83	16.794	16.918	0	693	43	0.85967808974117	0.0285131915088889	0.85967808974117	348.951771351658	0	11.5737841904422						233	15	3	NaN	NaN	NaN	0.0066324	1	4937	49.325	41.143	1	57031			7788	1874	6593	6771	7788	7788		
GPTVGGGLPGIGVQGLEGNLQMPGIK	26	Unmodified	_GPTVGGGLPGIGVQGLEGNLQMPGIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.108936	2445.30498	0.83661	0.00068277	-0.062217	-5.0776E-05	0.77439	0.00063199	816.442861339644	17.663	0.062065	17.663	17.628	17.69	0	438	22	1.03173026378327	0.0140868363075159	1.03173026378327	623.344689535853	0	8.51090145640569						129	8	4	NaN	NaN	NaN	1.2088E-06	1	36553	116.95	115.22	1	23239			7789	1584	6594	6772	7789	7789		
GPVEGYEENEEFLR	14	Unmodified	_GPVEGYEENEEFLR_			0	0	0	Q9UI30	Q9UI30	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.381017	1666.74748	2.3915	0.0019954	0.20254	0.00016899	2.594	0.0021644	834.380952428394	10.259	0.23055	10.259	10.152	10.383	0	369	76	1.07793901817685	0.0501784446971434	1.07793901817685	435.320926099431	0	20.2643439447387						1229	27	5	NaN	NaN	NaN	8.3018E-17	1	23528	192.95	157.99	1	476850			7790	3234	6595	6773	7790	7790		
GPVLQLHDLK	10	Unmodified	_GPVLQLHDLK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	373.888874	1118.64479	-0.32347	-0.00012094	-1.5762	-0.00058931	-1.8996	-0.00071025	373.888279497864	7.7576	0.14192	7.7576	7.7221	7.864	0	882	22	0.730840773481911	0.0143791608033274	0.730840773481911	444.499220982081	0	8.74544224592756						169	17	3	NaN	NaN	NaN	0.052435	1	7240	13.274	8.3668	1	46400			7791	1061	6596	6774	7791	7791		
GPVLQLHDLK	10	Unmodified	_GPVLQLHDLK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.329673	1118.64479	2.1902	0.0012273	-0.53812	-0.00030152	1.6521	0.00092573	560.329245261062	7.7576	0.16857	7.7576	7.7132	7.8818	0	567	34	0.944945209309785	0.0222684693182358	0.944945209309785	383.149580432591	0	9.02925861954498						365	20	4	NaN	NaN	NaN	0.0010123	1	7241	92.732	66.275	1	160790			7792	1061	6596	6774	7792	7792		
GPVSGTEPEPVYSMEAADYR	20	Unmodified	_GPVSGTEPEPVYSMEAADYR_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.98605	2153.95755	2.7059	0.002917	-1.7887	-0.0019282	0.91721	0.00098874	1078.48548479337	11.039	0.16847	11.039	10.977	11.146	0	192	136	1.1958073123591	0.0894926644626846	1.1958073123591	482.019814260593	0	36.0737361748418						2240	20	5	NaN	NaN	NaN	3.1625E-12	1	34089	133.47	125.89	1	687020			7793	1742	6597	6775	7793	7793		
GPVYIGELPQDFLR	14	Unmodified	_GPVYIGELPQDFLR_			0	0	0	Q9H0E2	Q9H0E2	Q9H0E2	TOLLIP	Toll-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.427573	1602.84059	0.31371	0.00025173	0.21641	0.00017365	0.53012	0.00042538	802.427782712933	16.83	0.097544	16.83	16.794	16.892	0	390	34	1.06389100039157	0.0220845924039434	1.06389100039157	429.78890555511	0	8.92169667327585						204	12	3	NaN	NaN	NaN	0.00020899	1	21688	54.27	48.242	1	47960			7794	2844	6598	6776	7794	7794		
GPWTCVGDMNR	11	Unmodified	_GPWTCVGDMNR_			0	0	0	O00115	O00115	O00115	DNASE2	Deoxyribonuclease-2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.779164	1291.54378	1.2781	0.00082665	3.2967	0.0021323	4.5748	0.0029589	646.7804536528	8.4761	0.10642	8.4761	8.4406	8.547	0	567	28	0.944945209309785	0.0182221791516658	0.944945209309785	382.524580939394	0	7.37654561885654						185	13	3	NaN	NaN	NaN	0.015815	1	12114	53.517	47.253	1	48377			7795	48	6599	6777	7795	7795		
GPYDFDQIK	9	Unmodified	_GPYDFDQIK_			0	0	0	Q5JSH3	Q5JSH3	Q5JSH3	WDR44	WD repeat-containing protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.761289	1081.50803	0.54935	0.00029762	0.13271	7.1897E-05	0.68206	0.00036952	541.761521474669	9.1326	0.10642	9.1326	9.0883	9.1947	0	636	28	0.898312834727904	0.0182752899876304	0.898312834727904	364.393614269439	0	7.41322923704172						144	13	2	NaN	NaN	NaN	0.032272	1	6235	33.426	27.163	1	37419			7796	1967	6600	6778	7796	7796		
GQATDIAIQAEEIMK	15	Unmodified	_GQATDIAIQAEEIMK_			0	0	0	Q16740	Q16740	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.411262	1616.80797	2.0041	0.0016222	1.3202	0.0010686	3.3244	0.0026908	809.413420687276	14.187	0.13302	14.187	14.116	14.249	0	372	37	1.07593298845566	0.0240806587960416	1.07593298845566	434.621433027157	0	9.72734412502393						231	16	3	NaN	NaN	NaN	0.00023389	1	22104	69.641	62.083	1	105730			7797	1904	6601	6779	7797	7797		
GQAVDYEGSR	10	Unmodified	_GQAVDYEGSR_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.249077	1080.4836	1.1288	0.00061096	0.2908	0.0001574	1.4196	0.00076835	541.249056953705	2.8981	0.37238	2.8981	2.8627	3.2351	0	708	37	0.849494101904619	0.0244500640244978	0.849494101904619	344.594783607513	0	9.91809655043096						491	43	3	NaN	NaN	NaN	0.0061715	1	6212	54.436	49.529	1	171320			7798	680	6602	6780	7798	7798		
GQCDLELINVCNENSLFK	18	Unmodified	_GQCDLELINVCNENSLFK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.00372	2151.99289	0.77101	0.00083038	0.62601	0.00067422	1.397	0.0015046	1077.50581316659	15.916	0.19509	15.916	15.872	16.067	0	105	94	1.25339330680955	0.061506826598742	1.25339330680955	505.235189172072	0	24.7930262617168						1150	23	4	NaN	NaN	NaN	2.4001E-07	1	34055	131.06	118.69	1	281060			7799	1503	6603	6781	7799	7799		
GQDEASAGGIWGFIK	15	Unmodified	_GQDEASAGGIWGFIK_			0	0	0	Q96M27	Q96M27	Q96M27	PRRC1	Protein PRRC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.37808	1534.74161	1.5082	0.0011588	0.34924	0.00026835	1.8574	0.0014272	768.377888471294	15.775	0.27488	15.775	15.642	15.916	0	444	40	1.02770517576159	0.0261684967549374	1.02770517576159	415.328400676654	0	10.5755231769522						760	32	5	NaN	NaN	NaN	9.2443E-12	1	19572	159.44	138.29	1	261170			7800	2583	6604	6782	7800	7800		
GQDHCGIESEVVAGIPR	17	Unmodified	_GQDHCGIESEVVAGIPR_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.628342	1822.8632	0.9313	0.00056682	0.64109	0.00039018	1.5724	0.000957	608.628730234814	10.197	0.24827	10.197	10.064	10.312	0	606	34	0.918606045818476	0.0223117043347298	0.918606045818476	556.067079874135	0	13.5061208587779						711	29	5	NaN	NaN	NaN	0.00057923	1	27792	59.67	55.688	1	303480			7801	566	6605	6783	7801	7801		
GQDHCGIESEVVAGIPR	17	Unmodified	_GQDHCGIESEVVAGIPR_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.438874	1822.8632	2.0031	0.0018277	-0.24116	-0.00022004	1.762	0.0016077	912.940481024655	10.188	0.15077	10.188	10.108	10.259	0	318	43	1.11199926528787	0.0280090817466732	1.11199926528787	448.758761442041	0	11.3033535417958						349	18	3	NaN	NaN	NaN	0.059351	1	27793	17.889	10.313	1	66774			7802	566	6605	6783	7802	7802		
GQDIEYIEIR	10	Unmodified	_GQDIEYIEIR_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.31696	1234.61937	1.3337	0.00082462	-1.0008	-0.00061882	0.33285	0.00020581	618.817238470803	10.418	0.17736	10.418	10.33	10.507	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	385.9896489868	0	8.19391762227156						259	21	3	NaN	NaN	NaN	0.0028438	1	10459	67.881	48.393	1	66509			7803	2436	6606	6784	7803	7803		
GQDSIEPVPGQK	12	Unmodified	_GQDSIEPVPGQK_			0	0	0	Q9NR50	Q9NR50	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.819867	1253.62518	1.7873	0.0011221	0.57555	0.00036134	2.3629	0.0014835	627.820018807707	4.7425	0.10641	4.7425	4.6982	4.8046	0	585	43	0.932794566565362	0.0283515051757137	0.932794566565362	377.726710663182	0	11.4806852186163						189	13	3	NaN	NaN	NaN	0.0002908	1	11026	92.428	63.118	1	39054			7804	3015	6607	6785	7804	7804		
GQELIYAGMPITEVFK	16	Unmodified	_GQELIYAGMPITEVFK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.46858	1794.92261	1.4338	0.0012882	-0.10716	-9.6283E-05	1.3266	0.001192	898.970790810084	17.956	0.35464	17.956	17.849	18.204	0	261	76	1.14997238118939	0.0499371538919759	1.14997238118939	464.137748667087	0	20.1550215999897						1427	41	6	NaN	NaN	NaN	1.4783E-06	1	27106	113.86	101.84	1	741510			7805	1235	6608	6786	7805	7805		
GQELIYAGMPITEVFK	16	Oxidation (M)	_GQELIYAGM(Oxidation (M))PITEVFK_	GQELIYAGM(1)PITEVFK	GQELIYAGM(56)PITEVFK	0	1	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.466038	1810.91752	1.8839	0.0017077	-3.1678	-0.0028715	-1.2839	-0.0011638	906.464073029193	15.508	0.18635	15.508	15.402	15.588	0	282	19	1.13599383354359	0.0119906807395329	1.13599383354359	458.464861261122	0	4.83920389297197						97	22	2	NaN	NaN	NaN	0.0063426	1	27500	55.782	35.171	1	62757			7806	1235	6608	6787	7806	7806	437	
GQESAGIVTSDGSSVPTFK	19	Unmodified	_GQESAGIVTSDGSSVPTFK_			0	0	0	Q06203	Q06203	Q06203	PPAT	Amidophosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.95762	1865.90069	2.1977	0.0020526	-0.50813	-0.00047457	1.6896	0.001578	934.458520674029	9.9928	0.097528	9.9928	9.9573	10.055	0	282	73	1.13599383354359	0.0479429623151366	1.13599383354359	458.362163352089	0	19.3445063480007						474	12	4	NaN	NaN	NaN	2.0163E-07	1	28841	127.62	123.07	1	102300			7807	1557	6609	6788	7807	7807		
GQEVETSVTYYR	12	Unmodified	_GQEVETSVTYYR_			0	0	0	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.341163	1430.66777	2.359	0.0016899	0.098279	7.0401E-05	2.4573	0.0017603	716.341350683753	6.6491	0.39899	6.6491	6.5959	6.9949	0	462	43	1.01562323939346	0.0282067707809603	1.01562323939346	410.712509790435	0	11.4066645692849						729	46	4	NaN	NaN	NaN	3.0243E-11	1	16406	172.1	130.3	1	673110			7808	187	6610	6789	7808	7808		
GQFNFDHPDAFDNELILK	18	Unmodified	_GQFNFDHPDAFDNELILK_			0	0	0	Q9BZX2	Q9BZX2	Q9BZX2	UCK2	Uridine-cytidine kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.340966	2119.00107	0.054196	3.8335E-05	-1.005	-0.0007109	-0.95083	-0.00067256	707.674724620346	15.065	0.11521	15.065	15.021	15.136	0	669	64	0.875957769340875	0.0426897139815897	0.875957769340875	529.691090437686	0	25.8144421350314						654	14	5	NaN	NaN	NaN	0.00032037	1	33601	61.067	58.351	1	223700			7809	2815	6611	6790	7809	7809		
GQFSTDELVAEVEK	14	Unmodified	_GQFSTDELVAEVEK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.380485	1550.74642	1.8216	0.0014142	1.1951	0.00092786	3.0167	0.0023421	776.381422532304	13.203	0.22172	13.203	13.15	13.371	0	414	61	1.04781950764076	0.0402120243950188	1.04781950764076	423.418168222433	0	16.2494605088915						805	26	3	NaN	NaN	NaN	1.0209E-07	1	20069	155.57	127.98	1	576060			7810	1503	6612	6791	7810	7810		
GQGCTAYDVAVNSDFYR	17	Unmodified	_GQGCTAYDVAVNSDFYR_			0	0	0	Q9NWS0	Q9NWS0	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.920514	1921.82648	2.2482	0.0021626	1.2764	0.0012278	3.5246	0.0033904	962.423788252736	11.403	0.18627	11.403	11.279	11.465	0	261	52	1.14997238118939	0.0339479110580481	1.14997238118939	463.902701064285	0	13.6947007536219						439	22	4	NaN	NaN	NaN	0.027435	1	30093	43.518	40.23	1	92359			7811	3082	6613	6792	7811	7811		
GQGSVSASVTEGQQNEQ	17	Unmodified	_GQGSVSASVTEGQQNEQ_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.384819	1704.75508	2.8032	0.0023922	-1.8092	-0.0015439	0.99402	0.00084828	853.383380905726	4.6361	0.17736	4.6361	4.5918	4.7691	0	399	61	1.0578662689527	0.0401898354964538	1.0578662689527	427.136101265974	0	16.2275045043938						685	21	4	NaN	NaN	NaN	2.3979E-19	1	24617	208.23	194.43	1	139340			7812	1275	6614	6793	7812	7812		
GQHDLESDVQQQLFK	15	Unmodified	_GQHDLESDVQQQLFK_			0	0	0	Q9UPU5	Q9UPU5	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.291835	1770.85368	-1.476	-0.00087277	-0.94182	-0.00055689	-2.4179	-0.0014297	591.291348688023	11.571	0.079872	11.571	11.545	11.624	0	753	22	0.81889964927511	0.0142932978262608	0.81889964927511	495.820819370473	0	8.65419181214236						151	10	4	NaN	NaN	NaN	0.035275	1	26440	34.193	29.665	1	28880			7813	3316	6615	6794	7813	7813		
GQHVPGSPFQFTVGPLGEGGAHK	23	Unmodified	_GQHVPGSPFQFTVGPLGEGGAHK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.722181	2303.14471	1.0783	0.00082893	2.4169	0.0018579	3.4952	0.0026869	769.058158782549	11.926	0.18623	11.926	11.846	12.032	0	408	64	1.0518390438467	0.0421673255783088	1.0518390438467	635.715422188244	0	25.4852863081879						479	22	2	NaN	NaN	NaN	1.7308E-06	1	35667	70.831	68.729	1	186370			7814	792	6616	6795	7814	7814		
GQHVTGSPFQFTVGPLGEGGAHK	23	Unmodified	_GQHVTGSPFQFTVGPLGEGGAHK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.053819	2307.13963	1.8883	0.0014541	2.5167	0.001938	4.405	0.0033921	770.390972948735	11.456	0.19508	11.456	11.367	11.562	0	393	31	1.0618830335572	0.0200782861239661	1.0618830335572	641.779195734514	0	12.1348829514681						493	23	5	NaN	NaN	NaN	0.00048434	1	35694	51.785	50.515	1	173760			7815	326	6617	6796	7815	7815		
GQIEEAGWSYVGGWTGQGGSK	21	Unmodified	_GQIEEAGWSYVGGWTGQGGSK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.49797	2152.9814	1.5883	0.0017113	0.88389	0.00095239	2.4721	0.0026637	1078.00017181598	14.001	0.11527	14.001	13.966	14.081	0	177	40	1.2057522832638	0.0258498318009717	1.2057522832638	486.029951540124	0	10.4198786698857						363	14	4	NaN	NaN	NaN	1.4604E-07	1	34077	112.67	110.28	1	82644			7816	578	6618	6797	7816	7816		
GQIIGNFQAFDEDTGLPAHAR	21	Unmodified	_GQIIGNFQAFDEDTGLPAHAR_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	753.038058	2256.09234	0.76271	0.00057435	0.40302	0.00030349	1.1657	0.00087784	753.372578165212	13.292	0.15966	13.292	13.238	13.398	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	595.619728769342	0	12.2020666487599						488	19	4	NaN	NaN	NaN	1.0341E-05	1	35243	62.711	54.711	1	134130			7817	1722	6619	6798	7817	7817		
GQILMPNIGYGSNK	14	Unmodified	_GQILMPNIGYGSNK_			0	0	0	P62910	P62910	P62910	RPL32	60S ribosomal protein L32	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.384851	1490.75515	1.2536	0.00093569	-1.1012	-0.00082194	0.1524	0.00011375	746.38500123545	11.607	0.27493	11.607	11.491	11.766	0	450	64	1.02367897599655	0.0422722007685605	1.02367897599655	413.810394720974	0	17.0880485932939						1200	32	5	NaN	NaN	NaN	1.7072E-06	1	18259	110.52	89.433	1	986960			7818	1414	6620	6799	7818	7818		
GQILTMANPIIGNGGAPDTTALDELGLSK	29	Unmodified	_GQILTMANPIIGNGGAPDTTALDELGLSK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	956.498818	2866.47462	0.80457	0.00076957	-0.47795	-0.00045715	0.32662	0.00031242	956.83242250205	18.86	0.053168	18.86	18.834	18.887	0	411	61	1.04982941439551	0.0401898354964538	1.04982941439551	633.752937857839	0	24.2614904561106						350	7	4	NaN	NaN	NaN	2.3344E-06	1	38026	66.215	65.529	1	61843			7819	922	6621	6800	7819	7819		
GQIQVILGPMFSGK	14	Unmodified	_GQIQVILGPMFSGK_			0	0	0	P04183	P04183	P04183	TK1	Thymidine kinase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.907962	1473.80137	0.58183	0.00042934	-0.10302	-7.6016E-05	0.47882	0.00035332	737.907896812852	16.395	0.17733	16.395	16.315	16.493	0	414	37	1.04781950764076	0.0241238779184587	1.04781950764076	423.613734735092	0	9.75283047014551						443	21	3	NaN	NaN	NaN	3.2461E-05	1	17712	80.623	56.787	1	108260			7820	511	6622	6801	7820	7820		
GQLCELSCSTDYR	13	Unmodified	_GQLCELSCSTDYR_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.840147	1587.66574	2.2984	0.0018269	-0.21977	-0.00017468	2.0787	0.0016522	794.840397604156	7.4915	0.25713	7.4915	7.394	7.6511	0	399	58	1.0578662689527	0.0381724416536884	1.0578662689527	427.390038364672	0	15.4221018115973						889	30	5	NaN	NaN	NaN	5.1898E-24	1	21188	216.53	193.64	1	545730			7821	2681	6623	6802	7821	7821		
GQLEALQVDGGR	12	Unmodified	_GQLEALQVDGGR_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.825483	1241.63641	2.2107	0.0013747	-0.67452	-0.00041943	1.5362	0.00095526	621.825226754789	7.6422	0.28385	7.6422	7.589	7.8729	0	588	58	0.93076847747433	0.038485045404303	0.93076847747433	376.945913148437	0	15.5858099340114						916	33	4	NaN	NaN	NaN	1.8954E-11	1	10671	187.85	140.5	1	672930		+	7822	39	6624	6803	7822	7822		
GQLEALQVDGGRLEAELR	18	Unmodified	_GQLEALQVDGGRLEAELR_			0	0	1	P08729;CON__Q3KNV1	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.016594	1953.02795	1.1847	0.00077247	-2.4331	-0.0015864	-1.2484	-0.00081395	652.349617860046	13.54	0.088669	13.54	13.504	13.593	0	591	106	0.928742107665821	0.0710411085741736	0.928742107665821	561.920108991424	0	42.9822521703032						686	11	3	NaN	NaN	NaN	0.001602	1	30773	75.012	65.434	1	194490		+	7823	39	6625	6804	7823	7823		
GQLESIVENIR	11	Unmodified	_GQLESIVENIR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.343509	1256.67246	0.64782	0.0004077	2.8159	0.0017722	3.4638	0.0021799	629.345469137079	12.6	0.11527	12.6	12.547	12.662	0	492	16	0.995464410099171	0.0100842904897975	0.995464410099171	403.09363738203	0	4.083434116489						144	14	3	NaN	NaN	NaN	0.017825	1	11117	44.57	39.074	1	54387			7824	744	6626	6805	7824	7824		
GQLLIFGATNWDLIGR	16	Unmodified	_GQLLIFGATNWDLIGR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.485953	1772.95735	1.4256	0.0012652	-1.6777	-0.0014889	-0.25211	-0.00022375	887.987626658965	19.596	0.053204	19.596	19.57	19.623	0	270	49	1.14398322290989	0.0319619627805261	1.14398322290989	461.764335551155	0	12.9013207630081						190	7	3	NaN	NaN	NaN	0.0062258	1	26495	45.183	40.033	1	37181			7825	3151	6627	6806	7825	7825		
GQLTTDQVFPYPSVLNEEQTQFLK	24	Unmodified	_GQLTTDQVFPYPSVLNEEQTQFLK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	928.135985	2781.38613	0.6896	0.00064004	0.80941	0.00075125	1.499	0.0013913	928.471245196811	18.009	0.08868	18.009	17.956	18.045	0	444	94	1.02770517576159	0.062350189424925	1.02770517576159	620.488784210424	0	37.6446418136326						600	11	4	NaN	NaN	NaN	1.5669E-09	1	37841	85.421	82.354	1	101780			7826	1145	6628	6807	7826	7826		
GQLVPLETVLDMLR	14	Unmodified	_GQLVPLETVLDMLR_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.444908	1582.87526	1.0142	0.00080367	-1.3103	-0.0010383	-0.29613	-0.00023466	792.443929782211	20.137	0.035476	20.137	20.137	20.173	0	384	46	1.06790610341098	0.0301112043248537	1.06790610341098	431.457541290246	0	12.1655884742985						132	5	4	NaN	NaN	NaN	0.0011125	1	21068	46.068	43.589	1	69258			7827	485	6629	6808	7827	7827		
GQMLGLGNPSFSDPFTGGGR	20	Unmodified	_GQMLGLGNPSFSDPFTGGGR_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.973081	1993.93161	1.3468	0.0013441	-0.51764	-0.00051659	0.82915	0.00082747	998.476383081848	15.845	0.21285	15.845	15.748	15.961	0	240	61	1.16393748060522	0.0398646712076904	1.16393748060522	469.414535396111	0	16.0773722175751						937	25	6	NaN	NaN	NaN	0.0011762	1	31519	47.844	46.476	1	189200			7828	3330	6630	6809	7828	7828		
GQNDLMGTAEDFADQFLR	18	Unmodified	_GQNDLMGTAEDFADQFLR_			0	0	0	O15260	O15260	O15260	SURF4	Surfeit locus protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.46	2026.90545	1.1915	0.0012088	0.65287	0.00066231	1.8444	0.0018711	1014.9619254089	20.022	0.062077	20.022	20.013	20.075	0	207	55	1.18585551256002	0.0358437157950102	1.18585551256002	478.2002540279	0	14.4540998603404						245	8	5	NaN	NaN	NaN	3.6242E-26	1	32089	203.76	201.05	1	108820			7829	158	6631	6810	7829	7829		
GQNDLMGTAEDFADQFLR	18	Oxidation (M)	_GQNDLM(Oxidation (M))GTAEDFADQFLR_	GQNDLM(1)GTAEDFADQFLR	GQNDLM(60)GTAEDFADQFLR	0	1	0	O15260	O15260	O15260	SURF4	Surfeit locus protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.45746	2042.90037	0.89712	0.00091727	0.85961	0.00087891	1.7567	0.0017962	1022.96000598673	18.275	0.062073	18.275	18.248	18.311	0	216	49	1.17988115188462	0.0318654545022787	1.17988115188462	475.765729651995	0	12.8491680604893						268	8	3	NaN	NaN	NaN	0.00039589	1	32391	59.77	58.591	1	53607			7830	158	6631	6811	7830	7830	37	
GQNLLQTQDHAK	12	Unmodified	_GQNLLQTQDHAK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.84949	1351.68443	2.0543	0.0013904	-1.5684	-0.0010615	0.48594	0.00032891	676.848976488988	3.3681	0.12424	3.3681	3.3503	3.4746	0	507	28	0.985374541851584	0.0181692995022645	0.985374541851584	398.702989715506	0	7.35167565723492						124	15	2	NaN	NaN	NaN	8.9383E-05	1	13938	74.424	58.842	1	29072			7831	1074	6632	6812	7831	7831		
GQNPNATFGEVSK	13	Unmodified	_GQNPNATFGEVSK_			0	0	0	O94842;O15405;O94900	O94842	O94842	TOX4;TOX3;TOX	TOX high mobility group box family member 4;TOX high mobility group box family member 3;Thymocyte selection-associated high mobility group box protein TOX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.828223	1347.64189	1.5252	0.0010292	-0.40669	-0.00027445	1.1185	0.00075479	675.329817713927	5.2302	0.13303	5.2302	5.1593	5.2923	0	519	46	0.97729762293174	0.0302905481075687	0.97729762293174	395.446902558546	0	12.2565563906782						261	16	3	NaN	NaN	NaN	0.017967	1	13823	30.068	16.794	1	56832			7832	174	6633	6813	7832	7832		
GQNQPVLNITNK	12	Unmodified	_GQNQPVLNITNK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.362233	1324.70991	1.2493	0.00082876	-1.0221	-0.00067803	0.22722	0.00015073	663.361697066504	6.7732	0.10638	6.7732	6.7377	6.8441	0	549	31	0.957085760909907	0.0202258527858471	0.957085760909907	387.336567584143	0	8.18548631115794						196	13	3	NaN	NaN	NaN	0.00098809	1	13142	85.622	73.026	1	49819			7833	922	6634	6814	7833	7833		
GQNVLLTENAEVK	13	Unmodified	_GQNVLLTENAEVK_			0	0	0	O95819;Q8N4C8;Q9UKE5	O95819	O95819	MAP4K4;MINK1;TNIK	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1;TRAF2 and NCK-interacting protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.880456	1413.74636	1.8258	0.0012924	0.67977	0.00048119	2.5056	0.0017736	707.880536345404	7.8906	0.09751	7.8906	7.8552	7.9527	-1.7764E-15	447	34	1.02569221487577	0.0221425729106015	1.02569221487577	414.831882069209	0	8.9553621068207						181	12	3	NaN	NaN	NaN	0.0033086	1	15888	58.476	51.326	1	37481			7834	457	6635	6815	7834	7834		
GQNVTEEECLEK	12	Unmodified	_GQNVTEEECLEK_			0	0	0	Q9NZD2	Q9NZD2	Q9NZD2	GLTP	Glycolipid transfer protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.322113	1434.62967	2.2669	0.0016284	-0.77088	-0.00055374	1.496	0.0010746	718.321338913136	4.5475	0.088663	4.5475	4.5209	4.6095	0	516	28	0.979317271586824	0.0181743257356556	0.979317271586824	396.020104474126	0	7.34940410569789						114	11	2	NaN	NaN	NaN	0.0067102	1	16519	39.039	35.056	1	25491			7835	3130	6636	6816	7835	7835		
GQPAIIDGELYNEVK	15	Unmodified	_GQPAIIDGELYNEVK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.425227	1644.8359	2.3797	0.0019595	0.66133	0.00054455	3.041	0.002504	823.425906827127	12.13	0.42568	12.13	11.908	12.334	0	330	85	1.10399226369747	0.0560953994404298	1.10399226369747	445.891378173882	0	22.6563679730295						2051	49	5	NaN	NaN	NaN	6.1802E-09	1	22887	151.52	138.94	1	1110800			7836	3332	6637	6817	7836	7836		
GQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYK	33	Unmodified	_GQPFGAAVSTAGEVVFQTGMVGYPEALTDPSYK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1125.5465	3373.61766	1.3878	0.0015621	1.1611	0.0013069	2.5489	0.0028689	1125.88170249378	19.712	0.044352	19.712	19.694	19.738	0	234	13	1.16792504164217	0.00797402629480115	1.16792504164217	704.531920321239	0	4.81020258823207						55	6	3	NaN	NaN	NaN	0.010377	1	38591	35.712	35.435	1	9512.3			7837	867	6638	6818	7837	7837		
GQQELLYVVPFVAK	14	Unmodified	_GQQELLYVVPFVAK_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.948141	1589.88173	0.7038	0.00056019	3.3769	0.0026879	4.0807	0.003248	795.950515160927	16.83	0.097501	16.83	16.785	16.883	0	321	79	1.10999792833052	0.0520885785221856	1.10999792833052	448.446404218664	0	21.044125527575						292	12	2	NaN	NaN	NaN	0.0009261	1	21287	64.906	60.077	1	64099			7838	10	6639	6819	7838	7838		
GQQLVMMPNK	10	Unmodified	_GQQLVMMPNK_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.293919	1144.57328	0.88875	0.00050952	-6.6866	-0.0038334	-5.7978	-0.0033238	573.293540549597	7.456	0.31028	7.456	7.3231	7.6334	0	627	49	0.90440375274676	0.0324691438304571	0.90440375274676	366.610016207326	0	13.1617248488519						844	36	6	NaN	NaN	NaN	0.0021263	1	7913	84.368	66.973	1	350370			7839	709;2224	6640	6820	7839	7839		
GQSEDPGSLLSLFR	14	Unmodified	_GQSEDPGSLLSLFR_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.383362	1504.75217	1.3509	0.0010178	0.20402	0.00015371	1.555	0.0011715	753.383896097815	17.832	0.33693	17.832	17.708	18.045	0	444	85	1.02770517576159	0.0563902078588648	1.02770517576159	415.402389093742	0	22.7931391400322						1521	36	6	NaN	NaN	NaN	7.6177E-34	1	18656	268.95	242.37	1	1297200			7840	576	6641	6821	7840	7840		
GQSFFIDAPDSPATLAYR	18	Unmodified	_GQSFFIDAPDSPATLAYR_			0	0	0	P53384	P53384	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.478522	1954.94249	1.78	0.0017417	7.5334	0.0073713	9.3134	0.009113	978.489591978428	15.18	0.18626	15.18	15.074	15.26	0	219	61	1.17788915118882	0.039842769151154	1.17788915118882	475.106693188558	0	16.070753584728						654	22	4	NaN	NaN	NaN	2.834E-10	1	30795	144.16	141.27	1	217690			7841	1234	6642	6822	7841	7841		
GQSLGYAFAEFQEHEHALK	19	Unmodified	_GQSLGYAFAEFQEHEHALK_			0	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.348232	2161.02287	1.0581	0.00076326	0.50727	0.00036592	1.5654	0.0011292	721.682880437334	12.396	0.097533	12.396	12.343	12.44	1.7764E-15	525	28	0.973257487423603	0.0181843844613631	0.973257487423603	588.453705710201	0	10.9946941694483						279	12	4	NaN	NaN	NaN	1.3978E-07	1	34186	105.78	95.134	1	105470			7842	3078	6643	6823	7842	7842		
GQTCVVHYTGMLEDGK	16	Unmodified	_GQTCVVHYTGMLEDGK_			0	0	0	P62942	P62942	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.943161	1793.80765	-0.96358	-0.00057713	0.85452	0.00051181	-0.10906	-6.5321E-05	599.278058480363	8.1922	0.062083	8.1922	8.1656	8.2277	0	744	28	0.82502364452135	0.0183694328474171	0.82502364452135	499.479113400189	0	11.1210728240586						151	8	3	NaN	NaN	NaN	0.0019896	1	27064	33.526	32.27	1	30129			7843	1418	6644	6824	7843	7843		
GQTCVVHYTGMLEDGK	16	Unmodified	_GQTCVVHYTGMLEDGK_			0	0	0	P62942	P62942	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.911104	1793.80765	2.4287	0.0021808	1.5873	0.0014252	4.016	0.003606	897.912439467416	8.2011	0.070937	8.2011	8.1656	8.2366	0	285	40	1.13399579921816	0.0259851749816993	1.13399579921816	457.691651602388	0	10.487867470718						239	9	3	NaN	NaN	NaN	0.00023	1	27065	53.363	50.692	1	50269			7844	1418	6644	6824	7844	7844		
GQTEHDEGMLEYLEDIIGCGR	21	Unmodified	_GQTEHDEGMLEYLEDIIGCGR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.026501	2421.05767	0.79597	0.00064316	-1.8985	-0.001534	-1.1025	-0.00089084	808.359803189041	19.845	0.026601	19.845	19.836	19.862	0	564	31	0.946969335010767	0.0202454642733264	0.946969335010767	572.166707729207	0	12.2324770311455						87	4	4	NaN	NaN	NaN	1.1345E-07	1	36443	68.127	64.687	1	14269			7845	3042	6645	6825	7845	7845		
GQTHTLEDFQR	11	Unmodified	_GQTHTLEDFQR_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.549469	1330.62658	-0.26356	-0.00011716	-0.87635	-0.00038958	-1.1399	-0.00050674	444.549099198475	4.7514	0.23061	4.7514	4.7159	4.9465	0	873	34	0.737001551771189	0.02258322347866	0.737001551771189	447.37734951021	0	13.7085500552872						476	27	4	NaN	NaN	NaN	9.6151E-05	1	13306	97.277	82.515	1	198900			7846	2667	6646	6826	7846	7846		
GQTLVVQFTVK	11	Unmodified	_GQTLVVQFTVK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.355888	1218.69722	0.57757	0.00035252	0.19631	0.00011982	0.77388	0.00047234	610.35586841984	11.811	0.3547	11.811	11.687	12.041	0	561	46	0.948993180460448	0.0303534869943584	0.948993180460448	384.406153855305	0	12.2952065745478						779	41	5	NaN	NaN	NaN	0.0074574	1	9993	39.039	30.856	1	328720			7847	868	6647	6827	7847	7847		
GQTPGGAQFVGLELYK	16	Unmodified	_GQTPGGAQFVGLELYK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.935762	1663.85697	2.5454	0.0021201	-2.4151	-0.0020116	0.13026	0.00010849	832.934149494046	13.584	0.17736	13.584	13.54	13.717	0	366	55	1.07994477139643	0.0361060601880221	1.07994477139643	436.137196951454	0	14.5814825910055						454	21	4	NaN	NaN	NaN	1.8283E-08	1	23455	103.23	81.088	1	133450			7848	1694	6648	6828	7848	7848		
GQTQVLCTVTFDSLESGIK	19	Unmodified	_GQTQVLCTVTFDSLESGIK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.02244	2082.03032	1.0393	0.001083	3.1877	0.0033217	4.2271	0.0044047	1042.52738184702	15.695	0.29256	15.695	15.553	15.845	0	171	55	1.20972836110953	0.0357847140895524	1.20972836110953	487.739178823464	0	14.4277075958297						756	34	4	NaN	NaN	NaN	3.4785E-05	1	33065	109.16	106.45	1	126300			7849	2345	6649	6829	7849	7849		
GQVFDVGPR	9	Unmodified	_GQVFDVGPR_			0	0	0	P28482	P28482	P28482	MAPK1	Mitogen-activated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.756341	973.498129	-0.50749	-0.00024753	-0.75295	-0.00036725	-1.2604	-0.00061479	487.756013144826	7.261	0.16847	7.261	7.19	7.3585	0	762	25	0.812773098473386	0.0163408788985463	0.812773098473386	330.154766590032	0	6.63779235405167						209	20	2	NaN	NaN	NaN	0.0098907	1	3704	56.014	44.365	1	64684			7850	879	6650	6830	7850	7850		
GQVGGEINVEMDAAPGVDLSR	21	Unmodified	_GQVGGEINVEMDAAPGVDLSR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.51277	2113.01098	1.6266	0.0017202	-3.0239	-0.0031979	-1.3973	-0.0014777	1057.50764824447	13.105	0.19508	13.105	12.972	13.167	0	165	58	1.21370334790578	0.0377753473176443	1.21370334790578	489.294299236861	0	15.2288136356452						491	23	4	NaN	NaN	NaN	0.0009616	1	33506	45.826	43.279	1	116070		+	7851	36	6651	6831	7851	7851		
GQVLNSDELQELYEGLR	17	Unmodified	_GQVLNSDELQELYEGLR_			0	0	0	O00764	O00764	O00764	PDXK	Pyridoxal kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.991994	1961.96943	0.75724	0.0007436	2.4088	0.0023654	3.166	0.003109	982.495531044679	16.892	0.24831	16.892	16.794	17.043	0	210	64	1.18386433251387	0.0418262905820341	1.18386433251387	477.504769730726	0	16.8703902166346						1317	29	5	NaN	NaN	NaN	3.4115E-10	1	30961	139.7	133.5	1	370980			7852	99	6652	6832	7852	7852		
GQVPPLVTTNFLVK	14	Unmodified	_GQVPPLVTTNFLVK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.942859	1511.87116	1.4438	0.0010928	0.69058	0.00052273	2.1343	0.0016156	756.943584239725	15.109	0.10639	15.109	15.065	15.171	0	402	52	1.05585747106793	0.0341354478713756	1.05585747106793	426.76333738953	0	13.7970872547222						459	13	4	NaN	NaN	NaN	0.00014671	1	18873	80.623	72.622	1	162710			7853	1247	6653	6833	7853	7853		
GQVQEVGWHDVAGWLGR	17	Unmodified	_GQVQEVGWHDVAGWLGR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.983336	1892.92818	-0.49863	-0.00031512	-1.8413	-0.0011637	-2.3399	-0.0014788	631.982080723417	14.595	0.097542	14.595	14.551	14.648	0	711	40	0.847456455381371	0.0264967721372047	0.847456455381371	512.854291866781	0	16.0350224780179						382	12	5	NaN	NaN	NaN	0.00030152	1	29443	51.569	42.816	1	121840			7854	744	6654	6834	7854	7854		
GQVQEVGWHDVAGWLGR	17	Unmodified	_GQVQEVGWHDVAGWLGR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.983336	1892.92818	0.19604	0.00012389	0.11218	7.0897E-05	0.30822	0.00019479	632.317573673392	14.595	0.088671	14.595	14.56	14.648	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	551.001518493143	0	11.0519716439701						192	11	3	NaN	NaN	NaN	0.00013206	1	29444	50.314	48.177	1	43870			7855	744	6654	6834	7855	7855		
GQVQEVGWHDVAGWLGR	17	Unmodified	_GQVQEVGWHDVAGWLGR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.471366	1892.92818	1.788	0.0016941	0.97655	0.00092525	2.7646	0.0026193	947.471444823981	14.595	0.088671	14.595	14.56	14.648	1.7764E-15	177	58	1.2057522832638	0.0377909043903639	1.2057522832638	486.4577287217	0	15.2466454107085						455	11	4	NaN	NaN	NaN	0.00018527	1	29445	51.829	47.275	1	100620			7856	744	6654	6834	7856	7856		
GQVTFLSIHPSGK	13	Unmodified	_GQVTFLSIHPSGK_			0	0	0	Q9NWT1	Q9NWT1	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.874976	1369.7354	1.4245	0.00097703	-3.5767	-0.0024532	-2.1522	-0.0014761	686.871721121037	9.0262	0.1951	9.0262	8.9198	9.1149	0	456	55	1.01965166402748	0.0362708643126453	1.01965166402748	412.517193640947	0	14.6739868967455						417	23	3	NaN	NaN	NaN	0.025456	1	14488	27.357	22.83	1	70807			7857	3083	6655	6835	7857	7857		
GQVVENNSVTEFSEEK	16	Unmodified	_GQVVENNSVTEFSEEK_			0	0	0	Q9BVS4	Q9BVS4	Q9BVS4	RIOK2	Serine/threonine-protein kinase RIO2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.42087	1794.82719	2.1823	0.0019606	-0.47636	-0.00042797	1.7059	0.0015327	898.420855696114	7.5713	0.11526	7.5713	7.5181	7.6334	0	330	31	1.10399226369747	0.0200230200251346	1.10399226369747	445.580000441885	0	8.08144908712171						231	14	3	NaN	NaN	NaN	1.6826E-06	1	27093	107.6	97.117	1	74267			7858	2770	6656	6836	7858	7858		
GQWINLPVLQLTK	13	Unmodified	_GQWINLPVLQLTK_			0	0	0	Q9NRG9	Q9NRG9	Q9NRG9	AAAS	Aladin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.443026	1508.8715	1.1954	0.00090306	-1.7495	-0.0013217	-0.55411	-0.0004186	755.44225592435	18.417	0.1596	18.417	18.319	18.479	0	417	58	1.04580932352505	0.0381882446994148	1.04580932352505	422.709644617075	0	15.4354517427984						555	19	3	NaN	NaN	NaN	3.3875E-05	1	18773	83.775	79.792	1	141130			7859	3020	6657	6837	7859	7859		
GQYFGELALVTNK	13	Unmodified	_GQYFGELALVTNK_			0	0	0	P13861;P31323	P13861	P13861	PRKAR2A;PRKAR2B	cAMP-dependent protein kinase type II-alpha regulatory subunit;cAMP-dependent protein kinase type II-beta regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.380091	1438.74563	2.0557	0.0014809	-1.9558	-0.0014089	0.099886	7.1956E-05	720.37872300683	13.575	0.16849	13.575	13.522	13.691	0	426	37	1.03977710643793	0.0241338680851122	1.03977710643793	420.457603658653	0	9.75908036371646						410	20	4	NaN	NaN	NaN	0.00049681	1	16640	73.655	65.181	1	118180			7860	687	6658	6838	7860	7860		
GQYISPFHDIPIYADK	16	Unmodified	_GQYISPFHDIPIYADK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.98071	1862.9203	-0.38278	-0.00023808	-0.73231	-0.00045548	-1.1151	-0.00069356	622.314640408595	13.371	0.21285	13.371	13.318	13.531	0	753	97	0.81889964927511	0.0652636926987925	0.81889964927511	495.630614303339	0	39.5001806785974						1913	25	6	NaN	NaN	NaN	1.559E-06	1	28762	102.57	94.991	1	1818300			7861	1822	6659	6839	7861	7861		
GQYISPFHDIPIYADK	16	Unmodified	_GQYISPFHDIPIYADK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.467426	1862.9203	2.0227	0.0018861	0.36292	0.00033841	2.3856	0.0022245	932.969452252368	13.371	0.33701	13.371	13.292	13.629	0	246	73	1.1599488233373	0.0479034164736727	1.1599488233373	468.033285169564	0	19.328778073599						1337	39	6	NaN	NaN	NaN	7.684E-07	1	28763	71.935	61.914	1	1251900			7862	1822	6659	6839	7862	7862		
GRDDCGTFEDTGPLLQFDYK	20	Unmodified	_GRDDCGTFEDTGPLLQFDYK_			0	0	1	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.682952	2333.02703	0.61542	0.00047921	-1.0692	-0.00083255	-0.45375	-0.00035333	779.016587431974	14.205	0.12413	14.205	14.152	14.276	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	555.148830551226	0	13.481948969343						412	15	5	NaN	NaN	NaN	3.6529E-23	1	35921	162.78	160.54	1	110350			7863	1765	6660	6840	7863	7863		
GSAFSTSISK	10	Unmodified	_GSAFSTSISK_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.753464	983.492375	0.17706	8.7247E-05	-1.985	-0.00097811	-1.8079	-0.00089087	492.752201082396	5.1327	0.21284	5.1327	5.0795	5.2923	0	744	31	0.82502364452135	0.0204119004973387	0.82502364452135	335.083599729329	0	8.29029948582047						216	25	3	NaN	NaN	NaN	0.060743	1	3912	29.755	16.203	1	44211			7864	3337	6661	6841	7864	7864		
GSAITGPVAK	10	Unmodified	_GSAITGPVAK_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.761092	899.507631	0.2743	0.00012365	0.53763	0.00024234	0.81193	0.00036599	450.761442507356	3.6164	0.13295	3.6164	3.5544	3.6874	0	765	43	0.810730346695089	0.0286044998957902	0.810730346695089	329.702014780013	0	11.6326732875631						280	16	2	NaN	NaN	NaN	0.064765	1	2317	24.121	11.294	1	264360			7865	1400	6662	6842	7865	7865		
GSAPPGPVPEGSIR	14	Unmodified	_GSAPPGPVPEGSIR_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.848958	1319.68336	2.0239	0.0013375	0.69423	0.00045878	2.7181	0.0017963	660.849410430104	6.1525	0.23947	6.1525	6.0815	6.321	0	480	37	1.00353128488872	0.024187253928307	1.00353128488872	406.149225119781	0	9.78906645829846						364	28	2	NaN	NaN	NaN	0.0041134	1	12973	55.754	46.24	1	128020			7866	1464	6663	6843	7866	7866		
GSAVHQLSEELR	12	Unmodified	_GSAVHQLSEELR_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.34404	1324.67353	1.5625	0.0010365	-0.83262	-0.00055231	0.72992	0.00048419	663.344195355184	6.3476	0.28378	6.3476	6.2678	6.5515	0	516	58	0.979317271586824	0.0383574228971185	0.979317271586824	396.333863549357	0	15.5234121297368						679	33	4	NaN	NaN	NaN	5.3054E-05	1	13134	76.255	66.741	1	245840			7867	1298	6664	6844	7867	7867		
GSDALSETSSVSHIEDLEK	19	Unmodified	_GSDALSETSSVSHIEDLEK_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.651646	2002.93311	1.4926	0.00099803	-0.42575	-0.00028468	1.0668	0.00071335	668.985056392967	10.152	0.14187	10.152	10.108	10.25	0	531	43	0.969216233931596	0.0282966100811786	0.969216233931596	586.305302497781	0	17.1173902711148						265	17	2	NaN	NaN	NaN	2.8484E-05	1	31683	86.135	79.279	1	128790			7868	2069	6665	6845	7868	7868		
GSDEGQFNEQNFVSK	15	Unmodified	_GSDEGQFNEQNFVSK_			0	0	0	Q9NWU1	Q9NWU1	Q9NWU1	OXSM	3-oxoacyl-[acyl-carrier-protein] synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.373723	1684.73289	2.6888	0.0022677	1.5828	0.0013349	4.2716	0.0036026	843.37440802205	7.7753	0.1508	7.7753	7.7044	7.8552	0	369	25	1.07793901817685	0.0160471329064824	1.07793901817685	435.282602526459	0	6.47999344752884						190	18	3	NaN	NaN	NaN	0.00011948	1	24033	76.563	73.892	1	39656			7869	3084	6666	6846	7869	7869		
GSDEPPVFLEIHYK	14	Unmodified	_GSDEPPVFLEIHYK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.275234	1629.80387	-0.04251	-2.3137E-05	1.0189	0.00055457	0.9764	0.00053143	544.276093886237	12.547	0.15961	12.547	12.493	12.653	0	654	43	0.886123392477847	0.0284420373903148	0.886123392477847	536.883055628155	0	17.2324171464463						366	19	4	NaN	NaN	NaN	0.017727	1	22476	48.701	45.598	1	130330			7870	880	6667	6847	7870	7870		
GSDHSASLEPGELAELVR	18	Unmodified	_GSDHSASLEPGELAELVR_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.977916	1865.91192	-0.43414	-0.00027046	-0.71021	-0.00044245	-1.1444	-0.00071291	622.977585515951	13.096	0.10639	13.096	13.043	13.15	0	699	40	0.85560534332665	0.0264710186728029	0.85560534332665	517.84022879002	0	16.0211229075925						343	13	4	NaN	NaN	NaN	6.7556E-07	1	28843	100.07	78.921	1	97678			7871	3013	6668	6848	7871	7871		
GSDHSASLEPGELAELVR	18	Unmodified	_GSDHSASLEPGELAELVR_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.977916	1865.91192	0.65576	0.00040852	0.59336	0.00036965	1.2491	0.00077817	622.978867225659	13.079	0.15067	13.079	12.99	13.141	0	597	91	0.924688525662974	0.0607616920760938	0.924688525662974	559.651616033669	0	36.7749552628494						577	18	5	NaN	NaN	NaN	0.0021484	1	28845	66.619	60.592	1	153170			7872	3013	6668	6848	7872	7872		
GSDQAIITLR	10	Unmodified	_GSDQAIITLR_			0	0	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.301113	1072.58767	0.98627	0.00052993	-1.1692	-0.0006282	-0.1829	-9.8274E-05	537.300576983179	8.5116	0.15073	8.5116	8.4584	8.6091	0	642	55	0.894250814548268	0.0365683394174512	0.894250814548268	362.783835911048	0	14.8352142720291						388	18	3	NaN	NaN	NaN	0.0054538	1	6026	74.269	45.167	1	287500			7873	976	6669	6849	7873	7873		
GSDVIIMLVGNK	12	Unmodified	_GSDVIIMLVGNK_			0	0	0	P20340;Q9NRW1	P20340	P20340	RAB6A;RAB6B	Ras-related protein Rab-6A;Ras-related protein Rab-6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.347206	1244.67986	0.89975	0.00056085	0.18885	0.00011772	1.0886	0.00067857	623.347459220989	14.622	0.2128	14.622	14.524	14.737	0	513	46	0.981336640919867	0.0302947379404193	0.981336640919867	397.414496862828	0	12.268540207464						454	25	3	NaN	NaN	NaN	3.4456E-05	1	10775	108.3	90.833	1	112790			7874	780	6670	6850	7874	7874		
GSEHQAIVQHLEK	13	Unmodified	_GSEHQAIVQHLEK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.591557	1474.75284	-0.51822	-0.00025527	1.6603	0.00081786	1.1421	0.00056259	492.59248773492	3.4567	0.142	3.4567	3.4301	3.5721	0	777	25	0.802556497112065	0.0163522499663766	0.802556497112065	486.681746991346	0	9.91623843245026						219	17	4	NaN	NaN	NaN	0.034705	1	17739	40.861	37.253	1	58303			7875	1766	6671	6851	7875	7875		
GSELEITLTR	10	Unmodified	_GSELEITLTR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.806228	1117.5979	0.8998	0.00050371	1.2401	0.00069421	2.1399	0.0011979	559.808037834232	10.143	0.2128	10.143	10.037	10.25	0	639	52	0.896281965493857	0.0345056424959307	0.896281965493857	363.422094383288	0	13.9912587184574						522	25	3	NaN	NaN	NaN	1.1967E-05	1	7204	125.98	109.52	1	169220			7876	1036	6672	6852	7876	7876		
GSELQNYFTK	10	Unmodified	_GSELQNYFTK_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.790578	1185.5666	0.63955	0.00037976	5.4419	0.0032314	6.0815	0.0036111	593.793683229809	9.3455	0.21291	9.3455	9.2745	9.4874	0	585	43	0.932794566565362	0.0283672188304905	0.932794566565362	377.962818530446	0	11.4942285979653						545	25	4	NaN	NaN	NaN	2.7052E-05	1	9018	108.3	90.907	1	187820			7877	1335	6673	6853	7877	7877		
GSETDSAQDQPVK	13	Unmodified	_GSETDSAQDQPVK_			0	0	0	P30419	P30419	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.312603	1360.61065	2.8001	0.0019077	-2.4536	-0.0016717	0.34645	0.00023604	681.310679730245	2.3395	0.24829	2.3395	2.3128	2.5611	0	573	40	0.940896116921038	0.0263318671085498	0.940896116921038	380.680817112961	0	10.6537124627478						238	29	2	NaN	NaN	NaN	0.00025006	1	14213	61.577	54.02	1	45514			7878	909	6674	6854	7878	7878		
GSEVGFHGAAPDISVK	16	Unmodified	_GSEVGFHGAAPDISVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.26685	1569.77872	-0.31701	-0.0001662	-1.066	-0.00055885	-1.383	-0.00072505	524.266135131923	8.139	0.12415	8.139	8.1036	8.2277	0	750	58	0.820941264895493	0.0387745352190065	0.820941264895493	497.550683702807	0	23.5002153423621						427	15	3	NaN	NaN	NaN	0.0014249	1	20655	39.82	36.315	1	123910			7879	1584	6675	6855	7879	7879		
GSEVGFHGAAPDISVK	16	Unmodified	_GSEVGFHGAAPDISVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.896637	1569.77872	2.4347	0.0019134	2.3258	0.0018278	4.7604	0.0037412	785.898832938899	8.1479	0.21288	8.1479	8.1036	8.3164	0	372	109	1.07593298845566	0.0722420752622983	1.07593298845566	434.732018588841	0	29.1894974341333						716	25	4	NaN	NaN	NaN	0.034295	1	20658	49.097	38.309	1	199110			7880	1584	6675	6855	7880	7880		
GSFSDTGLGDGK	12	Unmodified	_GSFSDTGLGDGK_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.762017	1139.50948	1.0006	0.00057113	2.3599	0.0013469	3.3605	0.0019181	570.762819816693	5.5139	0.19499	5.5139	5.4254	5.6203	0	627	37	0.90440375274676	0.0243552312702084	0.90440375274676	366.629368940432	0	9.8731822417538						291	23	3	NaN	NaN	NaN	0.00060384	1	7770	68.49	55.663	1	84501			7881	3355	6676	6856	7881	7881		
GSFSEQGINEFLR	13	Unmodified	_GSFSEQGINEFLR_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.36243	1482.71031	1.9562	0.0014522	0.40233	0.00029868	2.3585	0.0017509	742.362971710151	13.575	0.33692	13.575	13.487	13.824	0	471	61	1.00957851518677	0.040289830422827	1.00957851518677	408.13080680356	0	16.2875108266393						913	39	4	NaN	NaN	NaN	7.735E-24	1	17990	224.49	191.06	1	1171900			7882	1811	6677	6857	7882	7882		
GSGDTSNFDDYEEEDIR	17	Unmodified	_GSGDTSNFDDYEEEDIR_			0	0	0	P22694	P22694	P22694	PRKACB	cAMP-dependent protein kinase catalytic subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.887588	1947.76062	2.253	0.0021965	-0.73871	-0.00072016	1.5143	0.0014763	975.38800522082	8.769	0.071033	8.769	8.7334	8.8044	0	294	43	1.12800004657306	0.0279898124125677	1.12800004657306	454.995558873802	0	11.2901062195162						180	9	3	NaN	NaN	NaN	2.7792E-05	1	30670	79.235	78.497	1	31424			7883	810	6678	6858	7883	7883		
GSGIFDESTPVQTR	14	Unmodified	_GSGIFDESTPVQTR_			0	0	0	Q9H910	Q9H910	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.36517	1492.71579	1.71	0.001278	-3	-0.0022421	-1.29	-0.00096409	747.363099252048	9.0174	0.26604	9.0174	8.9109	9.177	0	447	70	1.02569221487577	0.0463173150504996	1.02569221487577	414.61922139862	0	18.723013419614						1091	31	5	NaN	NaN	NaN	0.0022454	1	18320	47.361	37.111	1	423180			7884	2929	6679	6859	7884	7884		
GSGIQWDLR	9	Unmodified	_GSGIQWDLR_			0	0	0	O75306	O75306	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.267073	1030.51959	0.54577	0.00028176	0.6971	0.00035989	1.2429	0.00064166	516.267291100007	10.117	0.21282	10.117	10.055	10.268	0	693	43	0.85967808974117	0.028505272317873	0.85967808974117	348.938659774305	0	11.5701349584178						464	25	4	NaN	NaN	NaN	0.011712	1	5006	48.157	13.226	1	166870			7885	316	6680	6860	7885	7885		
GSGNLEAIHIIK	12	Unmodified	_GSGNLEAIHIIK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.356419	1250.69829	1.9472	0.0012196	1.9943	0.0012491	3.9415	0.0024688	626.357939097215	8.343	0.15965	8.343	8.281	8.4406	0	513	49	0.981336640919867	0.0323032171840146	0.981336640919867	397.393508713118	0	13.0812284838814						593	19	5	NaN	NaN	NaN	4.9315E-11	1	10949	165.39	104.5	1	641140			7886	1461	6681	6861	7886	7886		
GSGTAEVELK	10	Unmodified	_GSGTAEVELK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.758746	989.50294	1.7668	0.00087591	1.1538	0.00057198	2.9206	0.0014479	495.759287154977	4.0598	0.52316	4.0598	3.909	4.4322	0	696	64	0.857641857947968	0.0427846553526837	0.857641857947968	348.302298832479	0	17.3755439709417						1371	60	5	NaN	NaN	NaN	0.00498	1	4039	55.235	41.587	1	1474200			7887	699	6682	6862	7887	7887		
GSGTASDDEFENLR	14	Unmodified	_GSGTASDDEFENLR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.326241	1496.63793	1.2171	0.00091201	1.3761	0.0010312	2.5932	0.0019432	749.326796695259	7.4915	0.15962	7.4915	7.4383	7.5979	0	486	37	0.999498404980629	0.0242006280672292	0.999498404980629	404.021061592931	0	9.78247028130784						384	19	4	NaN	NaN	NaN	7.3194E-06	1	18431	94.791	80.336	1	87791			7888	2149	6683	6863	7888	7888		
GSGTGAAGASDTTIK	15	Unmodified	_GSGTGAAGASDTTIK_			0	0	0	P49792;A6NKT7;Q7Z3J3;Q99666;P0DJD0;P0DJD1	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4;RGPD5;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.317688	1292.62082	2.1501	0.0013918	-1.9994	-0.0012942	0.15075	9.7582E-05	647.315914796817	2.8006	0.088663	2.8006	2.7828	2.8715	0	585	22	0.932794566565362	0.0141826244538193	0.932794566565362	377.602554129151	0	5.74123757789005						81	11	2	NaN	NaN	NaN	0.040214	1	12151	27.357	21.861	1	17387			7889	1151;19	6684	6864	7889	7889		
GSHQISLDNPDYQQDFFPK	19	Unmodified	_GSHQISLDNPDYQQDFFPK_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.01503	2235.02326	0.18266	0.00013626	1.4555	0.0010858	1.6381	0.0012221	746.350292782766	12.281	0.12418	12.281	12.21	12.334	0	600	28	0.922661313351899	0.0182499701953044	0.922661313351899	557.744225058564	0	11.0320172056892						216	15	3	NaN	NaN	NaN	0.00027181	1	35040	36.059	34.879	1	38160			7890	483	6685	6865	7890	7890		
GSIFVVFDSIESAK	14	Unmodified	_GSIFVVFDSIESAK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.893032	1497.77151	0.64622	0.0004846	1.7334	0.0012999	2.3796	0.0017845	749.894229195524	18.133	0.19506	18.133	18.089	18.284	0	381	46	1.06991323971056	0.030107052507665	1.06991323971056	432.481414464927	0	12.1699032880528						577	23	5	NaN	NaN	NaN	0.00019115	1	18474	64.906	59.755	1	271040			7891	533	6686	6866	7891	7891		
GSIHDFPGFDPNQDAEALYTAMK	23	Unmodified	_GSIHDFPGFDPNQDAEALYTAMK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.053156	2523.13764	0.091734	7.7245E-05	-0.36295	-0.00030562	-0.27121	-0.00022838	842.387176985283	16.75	0.1596	16.75	16.679	16.839	0	543	67	0.961130371139249	0.0444784249305462	0.961130371139249	580.588858240661	0	26.8680282323816						1078	19	5	NaN	NaN	NaN	7.1006E-13	1	36939	95.263	92.189	1	300050			7892	573	6687	6867	7892	7892		
GSIPEFFHIMK	11	Unmodified	_GSIPEFFHIMK_			0	0	0	Q9NRN7	Q9NRN7	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.336641	1304.65873	1.0031	0.00065534	3.5516	0.0023204	4.5547	0.0029757	653.338731957359	13.966	0.17733	13.966	13.877	14.054	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.565291785971	0	8.97996396787107						377	21	3	NaN	NaN	NaN	0.030535	1	12500	33.426	23.912	1	96248			7893	3022	6688	6868	7893	7893		
GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR	36	Unmodified	_GSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1238.96689	3713.87884	1.4493	0.0017956	-0.36063	-0.00044681	1.0887	0.0013488	1239.63478557505	18.479	0.088731	18.479	18.452	18.541	0	99	163	1.25735632164274	0.107207298266354	1.25735632164274	758.194193759804	0	64.64671125845						1383	11	6	NaN	NaN	NaN	1.3674E-17	1	38717	75.669	65.992	1	319730			7894	541	6689	6869	7894	7894		
GSIVWQEVFDDK	12	Unmodified	_GSIVWQEVFDDK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.848624	1421.6827	1.2235	0.00087097	-0.77023	-0.00054829	0.45331	0.00032269	711.847501294867	15.003	0.23943	15.003	14.897	15.136	0	474	61	1.00756305028564	0.0403176730241901	1.00756305028564	407.477673852721	0	16.3052343120306						622	28	4	NaN	NaN	NaN	7.5039E-05	1	16142	72.922	60.326	1	201280			7895	562	6690	6870	7895	7895		
GSLESPATDVFGSTEEGEK	19	Unmodified	_GSLESPATDVFGSTEEGEK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.441999	1938.86945	3.1653	0.0030718	-0.68891	-0.00066854	2.4764	0.0024032	970.442453960724	10.995	0.31926	10.995	10.853	11.172	0	279	109	1.13799159301878	0.0718255539341579	1.13799159301878	459.040689010202	0	28.9728430058193						1366	37	3	NaN	NaN	NaN	9.1186E-16	1	30482	162	146.47	1	565080			7896	64	6691	6871	7896	7896		
GSLGQGTAPVLPGK	14	Unmodified	_GSLGQGTAPVLPGK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.361702	1280.70885	1.7815	0.0011426	0.99896	0.0006407	2.7804	0.0017833	641.362211176571	7.456	0.16846	7.456	7.4117	7.5801	0	528	55	0.971237000454584	0.0363763278490683	0.971237000454584	393.203003181832	0	14.7268703192794						513	20	3	NaN	NaN	NaN	8.7828E-08	1	11794	145.95	112.52	1	211600			7897	1666	6692	6872	7897	7897		
GSLLFTAGPLEEER	14	Unmodified	_GSLLFTAGPLEEER_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.893563	1517.77257	1.8987	0.0014428	0.80962	0.00061522	2.7084	0.0020581	759.894293787924	14.214	0.24825	14.214	14.107	14.356	0	417	46	1.04580932352505	0.0301569310517751	1.04580932352505	422.687100754931	0	12.1885944858244						838	29	4	NaN	NaN	NaN	1.5425E-06	1	19069	110.52	80.173	1	386110			7898	1228	6693	6873	7898	7898		
GSLLIDSSTIDPAVSK	16	Unmodified	_GSLLIDSSTIDPAVSK_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.932885	1601.85122	3.0289	0.002429	-0.1214	-9.7353E-05	2.9075	0.0023317	801.93328788799	12.83	0.20396	12.83	12.751	12.955	0	345	91	1.09397730668811	0.0601270686031004	1.09397730668811	441.945461024707	0	24.2901611316853						1036	24	5	NaN	NaN	NaN	0.002547	1	21657	50.314	43.937	1	346870			7899	928	6694	6874	7899	7899		
GSLQILDQLLLPK	13	Unmodified	_GSLQILDQLLLPK_			0	0	0	Q9BV20	Q9BV20	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.437409	1436.86027	0.36342	0.00026146	0.07562	5.4404E-05	0.43904	0.00031586	719.43742793048	19.188	0.088652	19.188	19.135	19.224	0	429	46	1.03776581230406	0.030161093191106	1.03776581230406	419.649526469637	0	12.1964785555547						213	11	3	NaN	NaN	NaN	0.00033593	1	16598	79.889	67.293	1	40239			7900	2752	6695	6875	7900	7900		
GSLTEGALAHSGNPVSK	17	Unmodified	_GSLTEGALAHSGNPVSK_			0	0	0	Q9UPQ0	Q9UPQ0	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.918101	1623.82165	3.0369	0.0024688	-2.8387	-0.0023076	0.19822	0.00016114	812.915885016043	5.9573	0.12421	5.9573	5.8953	6.0195	0	303	40	1.12200181823275	0.0259994834338622	1.12200181823275	453.214250508618	0	10.502065332344						352	15	4	NaN	NaN	NaN	2.8817E-07	1	22309	96.27	76.714	1	90631			7901	3314	6696	6876	7901	7901		
GSLTFEPLTLVPIQTK	16	Unmodified	_GSLTFEPLTLVPIQTK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.498195	1742.98184	1.3394	0.0011686	0.11165	9.7416E-05	1.4511	0.001266	872.498481538946	18.213	0.088682	18.213	18.186	18.275	0	321	82	1.10999792833052	0.0540138309395757	1.10999792833052	448.106086023028	0	21.8053797720564						601	11	4	NaN	NaN	NaN	3.0671E-09	1	25696	156.73	146.48	1	198300			7902	3005	6697	6877	7902	7902		
GSMAGSTGVHDTVVNQLLSK	20	Unmodified	_GSMAGSTGVHDTVVNQLLSK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.673839	1999.99969	1.2793	0.00085415	0.30817	0.00020575	1.5875	0.0010599	667.674423409097	11.004	0.15076	11.004	10.906	11.057	0	540	46	0.963152256458504	0.0303366841243174	0.963152256458504	582.642910311544	0	18.3516716166837						308	18	4	NaN	NaN	NaN	0.00015011	1	31639	56.473	47.317	1	71416			7903	1082	6698	6878	7903	7903		
GSNMDFREPTEEER	14	Unmodified	_GSNMDFREPTEEER_			0	0	1	Q15056	Q15056	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.245897	1695.71586	-1.0611	-0.00060086	1.9344	0.0010954	0.87331	0.00049451	566.247049050331	5.4342	0.17734	5.4342	5.381	5.5583	0	780	37	0.800512323802183	0.0245352049516095	0.800512323802183	484.854417381726	0	14.8604864015729						542	21	5	NaN	NaN	NaN	1.3355E-07	1	24354	61.194	59.937	1	295360			7904	1804	6699	6879	7904	7904		
GSNMDFREPTEEER	14	Oxidation (M)	_GSNM(Oxidation (M))DFREPTEEER_	GSNM(1)DFREPTEEER	GSNM(50)DFREPTEEER	0	1	1	Q15056	Q15056	Q15056	EIF4H	Eukaryotic translation initiation factor 4H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.577536	1711.71078	-0.091905	-5.2531E-05	1.0952	0.00062601	1.0033	0.00057348	571.578188542862	3.9179	0.070931	3.9179	3.8647	3.9356	0	795	25	0.790287188799094	0.0163659109219131	0.790287188799094	478.625040477275	0	9.91175725542411						123	9	3	NaN	NaN	NaN	0.023753	1	24801	50.116	47.815	1	25076			7905	1804	6699	6880	7905	7905	571	
GSNNVALGYDEGSIIVK	17	Unmodified	_GSNNVALGYDEGSIIVK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.446691	1734.87883	2.4021	0.0020861	-4.1517	-0.0036056	-1.7496	-0.0015194	868.943355848956	11.429	0.19514	11.429	11.341	11.536	0	300	55	1.12400150285141	0.0360017689758143	1.12400150285141	453.776066475697	0	14.5344477481286						680	23	4	NaN	NaN	NaN	1.1056E-05	1	25472	54.556	51.841	1	273440			7906	973	6700	6881	7906	7906		
GSNTCELIFEDCK	13	Unmodified	_GSNTCELIFEDCK_			0	0	0	P26440	P26440	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.837073	1571.65959	1.5184	0.0011947	0.71625	0.00056357	2.2346	0.0017583	786.837617355941	9.9307	0.097532	9.9307	9.8952	9.9928	0	456	31	1.01965166402748	0.0201365621499445	1.01965166402748	411.987176290985	0	8.13611713984318						251	12	4	NaN	NaN	NaN	1.1222E-05	1	20697	126.48	116.39	1	56648			7907	853	6701	6882	7907	7907		
GSNTCEVHFENTK	13	Unmodified	_GSNTCEVHFENTK_			0	0	0	Q9H845	Q9H845	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.833179	1521.65181	2.7723	0.002112	-1.4294	-0.0010889	1.3429	0.0010231	761.831891069318	3.5721	0.07093	3.5721	3.5455	3.6164	0	411	22	1.04982941439551	0.0140693480868574	1.04982941439551	424.302142353476	0	5.68630908308825						85	9	2	NaN	NaN	NaN	2.0925E-05	1	19171	93.772	90.669	1	18044			7908	2922	6702	6883	7908	7908		
GSPCSEEAGTLR	12	Unmodified	_GSPCSEEAGTLR_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.285334	1262.55611	1.8471	0.0011679	-0.2403	-0.00015194	1.6068	0.001016	632.284902926511	3.6431	0.15958	3.6431	3.5898	3.7494	0	600	22	0.922661313351899	0.0141904869950359	0.922661313351899	373.594551497643	0	5.74586638425751						155	19	3	NaN	NaN	NaN	0.018178	1	11285	31.425	23.778	1	36428			7909	3067	6703	6884	7909	7909		
GSPLNAAPYGIESMSQDTEVR	21	Unmodified	_GSPLNAAPYGIESMSQDTEVR_			0	0	0	P18031	P18031	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1111.52333	2221.03211	2.3934	0.0026604	-2.1948	-0.0024396	0.19859	0.00022074	1112.02242207369	12.946	0.088724	12.946	12.901	12.99	0	138	55	1.23157729878518	0.0357307570773582	1.23157729878518	496.342321050131	0	14.3999787249633						379	11	4	NaN	NaN	NaN	0.00079235	1	34897	51.128	50.653	1	66644			7910	748	6704	6885	7910	7910		
GSPNANEPPLVFVGK	15	Unmodified	_GSPNANEPPLVFVGK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.404098	1524.79364	1.7308	0.0013213	-2.453	-0.0018727	-0.72226	-0.00055137	763.4026545667	11.5	0.2307	11.5	11.385	11.616	0	432	52	1.035754240522	0.0341825748875688	1.035754240522	418.605706662505	0	13.8150734571391						452	27	2	NaN	NaN	NaN	0.025812	1	19275	47.361	41.098	1	135180			7911	880	6705	6886	7911	7911		
GSQAQPDSPSAQLALIAASQSFLQPGGK	28	Unmodified	_GSQAQPDSPSAQLALIAASQSFLQPGGK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.80675	2753.39842	1.483	0.0013626	-0.2782	-0.00025562	1.2048	0.001107	919.474851274985	18.479	0.097607	18.479	18.426	18.523	0	243	49	1.16194328902838	0.0319180411076747	1.16194328902838	701.572062695617	0	19.2718578854566						375	12	5	NaN	NaN	NaN	0.016648	1	37772	47.965	47.816	1	72872			7912	3406	6706	6887	7912	7912		
GSQGPLPFHEK	11	Unmodified	_GSQGPLPFHEK_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.806562	1195.59857	1.1968	0.00071668	-2.8381	-0.0016995	-1.6413	-0.00098281	598.806429786954	5.2302	0.21285	5.2302	5.0883	5.3012	0	588	40	0.93076847747433	0.0263428128199913	0.93076847747433	377.105491702691	0	10.6729220227473						347	23	4	NaN	NaN	NaN	0.037679	1	9311	43.168	23.912	1	88359			7913	3194	6707	6888	7913	7913		
GSSAVGLTAYVMK	13	Unmodified	_GSSAVGLTAYVMK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.336838	1282.65912	1.6004	0.001028	0.67952	0.00043648	2.2799	0.0014645	642.337459814618	11.287	0.088686	11.287	11.252	11.341	0	453	40	1.02166545906632	0.0261829569110703	1.02166545906632	413.612136766888	0	10.5999362695105						250	11	3	NaN	NaN	NaN	0.0003289	1	11845	66.664	46.431	1	60325			7914	950	6708	6889	7914	7914		
GSSCFECTHYQSFLEYR	17	Unmodified	_GSSCFECTHYQSFLEYR_			0	0	0	P21964	P21964	P21964	COMT	Catechol O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.303418	2169.88842	0.73904	0.00053529	0.0029925	2.1675E-06	0.74203	0.00053745	724.638121874921	11.429	0.1153	11.429	11.394	11.509	0	609	34	0.916577990479294	0.0223117043347298	0.916577990479294	554.169541109818	0	13.48981437585						365	14	5	NaN	NaN	NaN	9.0288E-07	1	34302	119.79	118.42	1	123220			7915	797	6709	6890	7915	7915		
GSSGVGLTAAVTTDQETGER	20	Unmodified	_GSSGVGLTAAVTTDQETGER_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.46634	1934.91813	2.9074	0.0028157	-1.9899	-0.0019271	0.91752	0.00088859	968.464134439357	8.0591	0.23066	8.0591	8.0148	8.2454	0	264	61	1.14797626962532	0.0399085295347643	1.14797626962532	463.075011653184	0	16.0984536600257						585	27	4	NaN	NaN	NaN	6.1542E-16	1	30418	126.63	121.24	1	127250			7916	835	6710	6891	7916	7916		
GSSIFGLAPSK	11	Unmodified	_GSSIFGLAPSK_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.292756	1062.57096	0.35105	0.00018686	-2.3254	-0.0012378	-1.9743	-0.0010509	532.291782807587	10.649	0.24828	10.649	10.489	10.738	0	672	40	0.873923798053065	0.0264416320907981	0.873923798053065	354.579855804328	0	10.7282466902417						341	29	2	NaN	NaN	NaN	0.0071088	1	5796	39.039	19.552	1	191820			7917	613	6711	6892	7917	7917		
GSSNNQDVVTCDMACK	16	Unmodified	_GSSNNQDVVTCDMACK_			0	0	0	Q6NUQ4	Q6NUQ4	Q6NUQ4	TMEM214	Transmembrane protein 214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.36366	1784.71277	2.3903	0.0021354	-0.66261	-0.00059195	1.7277	0.0015434	893.362734435748	5.3366	0.11528	5.3366	5.3012	5.4164	0	372	31	1.07593298845566	0.0200644481678189	1.07593298845566	434.27392387329	0	8.09852168274705						274	14	4	NaN	NaN	NaN	3.9757E-09	1	26818	100.69	97.798	1	68946			7918	2047	6712	6893	7918	7918		
GSSYGVTSTESYK	13	Unmodified	_GSSYGVTSTESYK_			0	0	0	P98175	P98175	P98175	RBM10	RNA-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.312071	1364.60959	2.0508	0.0014014	-0.21584	-0.00014748	1.835	0.0012539	683.312101448916	4.7869	0.15074	4.7869	4.7425	4.8933	0	504	25	0.987393073566096	0.016144906020601	0.987393073566096	399.481418285202	0	6.53193761213799						251	18	4	NaN	NaN	NaN	0.022497	1	14319	48.701	46.399	1	61535			7919	1490	6713	6894	7919	7919		
GSTAPVGGGAFPTIVER	17	Unmodified	_GSTAPVGGGAFPTIVER_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.425562	1614.83657	2.1773	0.0017602	-3.3346	-0.0026958	-1.1574	-0.00093565	808.424619566408	11.536	0.14202	11.536	11.438	11.58	-1.7764E-15	378	64	1.07192009927972	0.0421615106260795	1.07192009927972	433.00494024811	0	17.0312529839517						664	17	4	NaN	NaN	NaN	5.1211E-10	1	22044	98.865	76.723	1	366500			7920	1811	6714	6895	7920	7920		
GSTDNLMDDIER	12	Oxidation (M)	_GSTDNLM(Oxidation (M))DDIER_	GSTDNLM(1)DDIER	GSTDNLM(69)DDIER	0	1	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.298638	1380.58272	1.5713	0.0010862	0.56345	0.00038951	2.1347	0.0014757	691.2988203452	6.4629	0.16848	6.4629	6.4096	6.5781	0	525	37	0.973257487423603	0.0242475250130607	0.973257487423603	393.71672142083	0	9.80897262448366						226	20	2	NaN	NaN	NaN	0.0016258	1	14834	69.276	60.299	1	82290			7921	1174	6715	6896	7921	7921	424	
GSTGFGQDSILSLPGNVGHQDVK	23	Unmodified	_GSTGFGQDSILSLPGNVGHQDVK_			0	0	0	P13798	P13798	P13798	APEH	Acylamino-acid-releasing enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.720506	2312.13969	2.8714	0.0022159	-0.11596	-8.9492E-05	2.7554	0.0021264	772.054927817675	12.884	0.16849	12.884	12.813	12.981	0	372	73	1.07593298845566	0.0481945603129839	1.07593298845566	650.262282629517	0	29.1273760872685						480	20	4	NaN	NaN	NaN	0.00070185	1	35735	56.943	54.629	1	116370			7922	684	6716	6897	7922	7922		
GSTMEEELENITTK	14	Oxidation (M)	_GSTM(Oxidation (M))EEELENITTK_	GSTM(1)EEELENITTK	GSTM(110)EEELENITTK	0	1	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.366718	1596.71888	2.0413	0.0016318	-1.3177	-0.0010533	0.72367	0.00057847	799.365765414398	8.077	0.097625	8.077	8.0237	8.1213	0	420	25	1.04379886199097	0.0160870233612731	1.04379886199097	421.685972660272	0	6.49902231198803						203	12	4	NaN	NaN	NaN	9.3707E-08	1	21469	106.11	100.72	1	62619			7923	1098	6717	6898	7923	7923	390	
GSVAEAEDCYNTALR	15	Unmodified	_GSVAEAEDCYNTALR_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.370126	1654.7257	2.7291	0.0022607	-0.45683	-0.00037842	2.2723	0.0018823	828.369487775564	7.8463	0.088673	7.8463	7.8108	7.8995	8.8818E-16	429	73	1.03776581230406	0.0482544393835054	1.03776581230406	419.122259203269	0	19.4885102315129						353	11	3	NaN	NaN	NaN	1.3338E-06	1	23174	121.71	110.92	1	72974			7924	161	6718	6899	7924	7924		
GSVDSNWIVGATLEK	15	Unmodified	_GSVDSNWIVGATLEK_			0	0	0	O96008	O96008	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.404295	1574.79404	2.0891	0.0016471	-1.8898	-0.0014899	0.19936	0.00015717	788.402469481243	13.584	0.14188	13.584	13.54	13.682	0	408	40	1.0518390438467	0.0261251880875029	1.0518390438467	424.985011639816	0	10.5556201097608						394	17	4	NaN	NaN	NaN	1.1717E-08	1	20825	165.09	136.45	1	118810			7925	469	6719	6900	7925	7925		
GSVPLSSSPPATHFPDETEITNPVPK	26	Unmodified	_GSVPLSSSPPATHFPDETEITNPVPK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.120335	2703.33918	1.1271	0.0010168	0.83502	0.00075328	1.9621	0.00177	902.455497859162	12.121	0.10641	12.121	12.059	12.165	0	453	64	1.02166545906632	0.0422897180004469	1.02166545906632	616.930822557483	0	25.5365690209228						606	13	4	NaN	NaN	NaN	1.0496E-09	1	37612	41.188	28.126	1	126670			7926	652	6720	6901	7926	7926		
GSVQMDSTLQGDMR	14	Unmodified	_GSVQMDSTLQGDMR_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.84269	1523.67083	2.1475	0.0016382	4.2934	0.0032752	6.4409	0.0049134	762.846015138765	7.8729	0.12413	7.8729	7.8374	7.9615	0	438	73	1.03173026378327	0.0483211026601307	1.03173026378327	416.982133705918	0	19.5293645999674						535	15	3	NaN	NaN	NaN	0.03301	1	19216	35.45	30.621	1	105500			7927	1030	6721	6902	7927	7927		
GSYGDLGGPIITTQVTIPK	19	Unmodified	_GSYGDLGGPIITTQVTIPK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.020023	1916.02549	2.5716	0.0024662	0.88131	0.00084519	3.4529	0.0033114	959.522422703966	14.542	0.32809	14.542	14.444	14.772	0	198	127	1.1918274123006	0.0836584571268968	1.1918274123006	480.797596533701	0	33.7488336827957						3235	38	6	NaN	NaN	NaN	4.36E-47	1	29980	237.89	211.37	1	3951700			7928	1360	6722	6903	7928	7928		
GSYGLDLEAVR	11	Unmodified	_GSYGLDLEAVR_			0	0	0	O15357	O15357	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.303852	1178.59315	1.3218	0.00078025	0.061548	3.6332E-05	1.3833	0.00081658	590.304150651461	11.012	0.09754	11.012	10.977	11.075	0	549	34	0.957085760909907	0.0222438199941358	0.957085760909907	387.831883232237	0	9.01367771933315						212	12	3	NaN	NaN	NaN	0.03581	1	8844	30.918	30.126	1	46347			7929	167	6723	6904	7929	7929		
GTADVTHDLQEMK	13	Unmodified	_GTADVTHDLQEMK_			0	0	0	P11166	P11166	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.229408	1443.66639	-0.93609	-0.00045141	-0.22894	-0.0001104	-1.165	-0.00056181	482.229362844133	7.4117	0.1064	7.4117	7.3762	7.4826	0	837	31	0.761618911097395	0.0204973173150498	0.761618911097395	461.948923438906	0	12.4323510473627						232	13	3	NaN	NaN	NaN	0.029189	1	16768	10.972	4.7082	1	58167			7930	641	6724	6905	7930	7930		
GTAYTFFTPGNLK	13	Unmodified	_GTAYTFFTPGNLK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.861534	1415.70852	1.4503	0.001028	-1.2032	-0.00085289	0.24708	0.00017515	708.861261247678	13.292	0.21284	13.292	13.176	13.389	0	477	82	1.0055473068722	0.0544326408515292	1.0055473068722	406.679004187013	0	22.0144910393387						802	25	3	NaN	NaN	NaN	0.00054924	1	15964	62.271	42.088	1	259140			7931	2435	6725	6906	7931	7931		
GTAYVVYEDIFDAK	14	Unmodified	_GTAYVVYEDIFDAK_			0	0	0	Q9Y3B4	Q9Y3B4	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.887946	1589.76134	1.9112	0.0015211	0.6714	0.00053436	2.5826	0.0020554	795.888454235414	15.766	0.20397	15.766	15.704	15.908	0	360	58	1.08395544855938	0.0380778290507997	1.08395544855938	437.925369131739	0	15.3837017609614						715	24	4	NaN	NaN	NaN	0.00023833	1	21269	70.195	55.047	1	319690			7932	3380	6726	6907	7932	7932		
GTCAFSILFK	10	Unmodified	_GTCAFSILFK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.296985	1142.57942	0.027966	1.6005E-05	1.7649	0.0010101	1.7929	0.0010261	572.297336200055	15.136	0.12416	15.136	15.092	15.216	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	369.085639385272	0	9.04824414729978						220	15	3	NaN	NaN	NaN	0.012437	1	7855	44.82	39.913	1	40210			7933	1784	6727	6908	7933	7933		
GTDDFDFAGSFQGPR	15	Unmodified	_GTDDFDFAGSFQGPR_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.852426	1615.6903	1.6905	0.0013673	0.16157	0.00013068	1.852	0.001498	808.852545119047	13.23	0.11527	13.23	13.185	13.3	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	418.393753885024	0	8.12632212911996						250	14	4	NaN	NaN	NaN	4.2984E-06	1	22057	88.734	85.631	1	57588			7934	1540	6728	6909	7934	7934		
GTDDSMTLQSQK	12	Unmodified	_GTDDSMTLQSQK_			0	0	0	O00422	O00422	O00422	SAP18	Histone deacetylase complex subunit SAP18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.798274	1309.58199	2.6973	0.0017689	-1.6618	-0.0010898	1.0355	0.00067907	655.797484543801	3.9888	0.2749	3.9888	3.9179	4.1928	0	549	46	0.957085760909907	0.0303450838148018	0.957085760909907	387.382757467124	0	12.2822454620715						695	32	4	NaN	NaN	NaN	1.1634E-07	1	12631	155.57	151.68	1	174710			7935	77	6729	6910	7935	7935		
GTDECAIESIAVAATPIPK	19	Unmodified	_GTDECAIESIAVAATPIPK_			0	0	0	P53634	P53634	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.993148	1941.97174	0.71214	0.0006922	-0.11394	-0.00011075	0.5982	0.00058145	972.494173036524	14.994	0.070954	14.994	14.959	15.03	0	72	58	1.27517645957152	0.0376151518538832	1.27517645957152	514.372194240854	0	15.1729496341912						303	9	3	NaN	NaN	NaN	3.6278E-07	1	30556	98.865	96.15	1	53718			7936	1242	6730	6911	7936	7936		
GTDIMYTGTLDCWR	14	Oxidation (M)	_GTDIM(Oxidation (M))YTGTLDCWR_	GTDIM(1)YTGTLDCWR	GTDIM(170)YTGTLDCWR	0	1	0	P05141	P05141	P05141	SLC25A5	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.871447	1703.72834	1.5931	0.0013587	0.32472	0.00027694	1.9178	0.0016357	852.872227277639	11.864	0.19511	11.864	11.82	12.015	0	363	40	1.08195024817156	0.0260676102408008	1.08195024817156	436.862637912784	0	10.5254053900571						649	23	5	NaN	NaN	NaN	1.5387E-23	1	24593	173.07	158.62	1	253900			7937	525	6731	6912	7937	7937	101	
GTDLWLGVDALGLNIYEK	18	Unmodified	_GTDLWLGVDALGLNIYEK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.020023	1976.02549	1.5937	0.0015762	-1.5519	-0.0015349	0.041826	4.1367E-05	989.519552382404	19.774	0.062073	19.774	19.747	19.809	0	201	55	1.18983705239708	0.0358240323566106	1.18983705239708	479.88986474193	0	14.44869279158						207	8	4	NaN	NaN	NaN	6.2498E-05	1	31220	59.77	57.381	1	42702			7938	710	6732	6913	7938	7938		
GTDTVAGLALIK	12	Unmodified	_GTDTVAGLALIK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.840071	1157.66559	0.57549	0.00033369	0.65086	0.00037739	1.2263	0.00071108	579.840437416861	12.307	0.09752	12.307	12.281	12.378	0	525	34	0.973257487423603	0.0222284349441159	0.973257487423603	394.467485359292	0	9.00932687308642						213	12	3	NaN	NaN	NaN	0.0029655	1	8304	49.16	44.62	1	73934			7939	1067	6733	6914	7939	7939		
GTDVNVFNTILTTR	14	Unmodified	_GTDVNVFNTILTTR_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.912287	1549.81002	0.79545	0.0006172	-4.0281	-0.0031255	-3.2327	-0.0025083	776.40889989788	15.712	0.1064	15.712	15.659	15.766	0	375	19	1.07392668217569	0.0120386679854436	1.07392668217569	433.970275931672	0	4.86478653915975						105	13	3	NaN	NaN	NaN	0.00031049	1	20052	61.194	52.82	1	24905			7940	506	6734	6915	7940	7940		
GTDVNVFNTILTTR	14	Unmodified	_GTDVNVFNTILTTR_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.912287	1549.81002	1.608	0.0012476	2.5983	0.0020161	4.2063	0.0032637	775.914524634302	15.934	0.39903	15.934	15.837	16.236	0	369	61	1.07793901817685	0.0401233788834319	1.07793901817685	435.591622256058	0	16.2137258263353						1417	46	6	NaN	NaN	NaN	4.687E-33	1	20053	269.28	192.71	1	2424900			7941	506	6734	6915	7941	7941		
GTEAGQVGEPGIPTGEAGPSCSSASDK	27	Unmodified	_GTEAGQVGEPGIPTGEAGPSCSSASDK_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1273.5692	2545.12384	2.0576	0.0026205	-1.094	-0.0013933	0.96361	0.0012272	1274.06889778303	7.456	0.079803	7.456	7.4294	7.5092	0	99	82	1.25735632164274	0.0534897526840867	1.25735632164274	506.330270691828	0	21.5400205093716						467	10	3	NaN	NaN	NaN	0.00014302	1	37008	58.061	57.697	1	92300			7942	166	6735	6916	7942	7942		
GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK	31	Unmodified	_GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK_			0	0	1	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1105.85482	3314.54264	1.2638	0.0013976	1.0605	0.0011728	2.3244	0.0025704	1106.52411838377	9.4342	0.035489	9.4342	9.4076	9.443	0	201	16	1.18983705239708	0.00995316642198452	1.18983705239708	717.802565275911	0	6.0045267340812						35	5	2	NaN	NaN	NaN	0.026846	1	38558	24.385	24.183	1	7744.1			7943	1638	6736	6917	7943	7943		
GTEASSGTEAATGLEGEEK	19	Unmodified	_GTEASSGTEAATGLEGEEK_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.410699	1822.80685	2.6796	0.0024449	-1.9125	-0.001745	0.76716	0.00069996	912.408616572957	5.2125	0.15079	5.2125	5.177	5.3278	0	315	49	1.11400032671325	0.0320191966216983	1.11400032671325	449.566421021792	0	12.9216798990359						543	18	5	NaN	NaN	NaN	2.6943E-57	1	27787	247.66	230.66	1	185860			7944	2220	6737	6918	7944	7944		
GTEDFIVESLDASFR	15	Unmodified	_GTEDFIVESLDASFR_			0	0	0	P43307	P43307	P43307	SSR1	Translocon-associated protein subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.60542	1684.79443	-0.68079	-0.00038302	-1.1798	-0.00066374	-1.8605	-0.0010468	562.605026277643	18.461	0.079877	18.461	18.426	18.506	0	666	22	0.877991458330206	0.0142358237480561	0.877991458330206	531.809915467781	0	8.62280851623132						119	10	3	NaN	NaN	NaN	0.065782	1	24041	16.759	15.61	1	27640			7945	1065	6738	6919	7945	7945		
GTEDFIVESLDASFR	15	Unmodified	_GTEDFIVESLDASFR_			0	0	0	P43307	P43307	P43307	SSR1	Translocon-associated protein subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.404492	1684.79443	1.6119	0.0013594	0.60724	0.00051214	2.2191	0.0018716	843.405165131191	18.461	0.097607	18.461	18.426	18.523	0	243	103	1.16194328902838	0.067900561046087	1.16194328902838	469.204234767267	0	27.4189206020012						699	12	4	NaN	NaN	NaN	1.8089E-06	1	24045	84.999	61.163	1	236190			7946	1065	6738	6919	7946	7946		
GTEDFIVESLDASFR	15	Unmodified	_GTEDFIVESLDASFR_			0	0	0	P43307	P43307	P43307	SSR1	Translocon-associated protein subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.404492	1684.79443	1.3334	0.0011246	1.2313	0.0010385	2.5647	0.0021631	843.405509319937	18.461	0.15967	18.461	18.408	18.568	0	378	49	1.07192009927972	0.0321164047126832	1.07192009927972	432.851974876587	0	12.9689229777125						461	19	4	NaN	NaN	NaN	0.00010538	1	24046	96.946	76.763	1	139410			7947	1065	6738	6919	7947	7947		
GTEDITSPHGIPLDLLDR	18	Unmodified	_GTEDITSPHGIPLDLLDR_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.337333	1947.99017	-0.53716	-0.00034933	-1.1906	-0.0007743	-1.7278	-0.0011236	650.336662859793	14.666	0.35471	14.666	14.568	14.923	0	714	55	0.845418525735192	0.0366852964336388	0.845418525735192	511.515868326713	0	22.1962385361228						1488	41	4	NaN	NaN	NaN	2.0266E-11	1	30681	148.69	131.28	1	600240			7948	3331	6739	6920	7948	7948		
GTEGMEPEEGVTVESQPQVK	20	Unmodified	_GTEGMEPEEGVTVESQPQVK_			0	0	0	O15446	O15446	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.99662	2129.97868	1.9262	0.0020533	-0.36428	-0.00038832	1.5619	0.001665	1066.49742142499	7.935	0.12411	7.935	7.8818	8.0059	0	177	40	1.2057522832638	0.0258569287367985	1.2057522832638	486.063600524426	0	10.4234609834548						224	15	3	NaN	NaN	NaN	0.00092295	1	33737	57.279	54.889	1	44355			7949	176	6740	6921	7949	7949		
GTENEDAGSDYQSDNQASWIHR	22	Unmodified	_GTENEDAGSDYQSDNQASWIHR_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.349689	2479.02724	2.2484	0.0018602	0.25075	0.00020746	2.4992	0.0020677	827.684278949834	6.9683	0.12411	6.9683	6.9328	7.0569	0	516	94	0.979317271586824	0.0626611719432242	0.979317271586824	591.632645877216	0	37.8553468075439						941	15	5	NaN	NaN	NaN	3.2877E-23	1	36726	182.1	181.84	1	336430			7950	1098	6741	6922	7950	7950		
GTEPFVTGVR	10	Unmodified	_GTEPFVTGVR_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.782556	1061.55056	0.46739	0.00024855	-0.1138	-6.0518E-05	0.35359	0.00018803	531.782962341055	7.2432	0.15961	7.2432	7.19	7.3496	0	681	49	0.867820189810857	0.0325638877438675	0.867820189810857	352.107740234831	0	13.2124108903861						338	19	3	NaN	NaN	NaN	0.048652	1	5768	22.044	5.4962	1	86431			7951	1247	6742	6923	7951	7951		
GTEVATNLVILCTGIK	16	Unmodified	_GTEVATNLVILCTGIK_			0	0	0	Q9BRQ8	Q9BRQ8	Q9BRQ8	AIFM2	Apoptosis-inducing factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.966205	1687.91786	0.98563	0.00083283	0.90979	0.00076874	1.8954	0.0016016	844.966687984256	14.905	0.088668	14.905	14.87	14.959	0	219	25	1.17788915118882	0.0159371013447664	1.17788915118882	475.636150391246	0	6.43546255975724						143	11	3	NaN	NaN	NaN	1.6053E-06	1	24156	68.108	63.291	1	34061			7952	2711	6743	6924	7952	7952		
GTEVQVDDIK	10	Unmodified	_GTEVQVDDIK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.282586	1102.55062	1.53	0.00084498	0.40335	0.00022276	1.9333	0.0010677	552.283341156801	5.6647	0.19514	5.6647	5.5937	5.7889	0	618	37	0.910492137470517	0.0243552312702084	0.910492137470517	369.245379409226	0	9.87713813317669						436	23	4	NaN	NaN	NaN	0.0011115	1	6783	65.404	48.009	1	172720			7953	3325	6744	6925	7953	7953		
GTFHWSGNEQMTK	13	Unmodified	_GTFHWSGNEQMTK_			0	0	0	Q9NZL9	Q9NZL9	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.22963	1521.66706	-1.0893	-0.0005536	-0.2988	-0.00015186	-1.3881	-0.00070546	508.229524831274	6.2234	0.079817	6.2234	6.1879	6.2678	0	828	49	0.767766820543916	0.0327957139126527	0.767766820543916	465.451520307935	0	19.8820976522717						225	10	4	NaN	NaN	NaN	1.3003E-05	1	19173	101.45	97.242	1	48895			7954	3135	6745	6926	7954	7954		
GTFVHSTWTCPMEVLR	16	Unmodified	_GTFVHSTWTCPMEVLR_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.974684	1919.90222	-0.094937	-6.0852E-05	-0.88163	-0.0005651	-0.97656	-0.00062595	641.308813697829	13.309	0.12414	13.309	13.247	13.371	0	666	43	0.877991458330206	0.0284736285227984	0.877991458330206	531.27885826078	0	17.229594557678						416	15	5	NaN	NaN	NaN	0.0013827	1	30052	52.837	46.81	1	94053			7955	3353	6746	6927	7955	7955		
GTFVHSTWTCPMEVLR	16	Unmodified	_GTFVHSTWTCPMEVLR_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.958388	1919.90222	1.6638	0.0015989	2.1235	0.0020406	3.7874	0.0036395	961.462617648869	13.3	0.15963	13.3	13.221	13.38	0	225	61	1.17390432875292	0.039842769151154	1.17390432875292	473.56032819958	0	16.0728215864445						353	19	2	NaN	NaN	NaN	0.044953	1	30053	45.183	43.709	1	123360			7956	3353	6746	6927	7956	7956		
GTGEAEEEYVGPR	13	Unmodified	_GTGEAEEEYVGPR_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.315145	1392.61574	2.4296	0.0016942	-1.9188	-0.001338	0.51076	0.00035616	697.313954892698	5.1327	0.18623	5.1327	5.0883	5.2745	0	525	40	0.973257487423603	0.0262627024268471	0.973257487423603	393.682998720149	0	10.6232724428002						402	22	4	NaN	NaN	NaN	2.5378E-05	1	15223	108.93	93.05	1	120280			7957	1709	6747	6928	7957	7957		
GTGGVDTAAVGGVFDVSNADR	21	Unmodified	_GTGGVDTAAVGGVFDVSNADR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.96905	1963.92355	1.5923	0.0015651	-0.084006	-8.2575E-05	1.5082	0.0014826	983.469525580397	12.582	0.13298	12.582	12.538	12.671	0	264	67	1.14797626962532	0.0438933519706592	1.14797626962532	463.026300903448	0	17.7040039371726						540	16	4	NaN	NaN	NaN	5.026E-11	1	30997	135.5	121.72	1	109350			7958	668	6748	6929	7958	7958		
GTGLLSSDYR	10	Unmodified	_GTGLLSSDYR_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.769645	1067.52474	0.78726	0.000421	-1.1448	-0.00061219	-0.35752	-0.00019119	534.768026249546	6.986	0.19523	6.986	6.8707	7.066	0	651	37	0.888155670855968	0.0243890366748388	0.888155670855968	360.332795695615	0	9.89485296074042						310	23	3	NaN	NaN	NaN	0.0062875	1	5895	60.892	48.825	1	94851			7959	2129	6749	6930	7959	7959		
GTGLYELWK	9	Unmodified	_GTGLYELWK_			0	0	0	Q9H9T3	Q9H9T3	Q9H9T3	ELP3	Elongator complex protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.782025	1065.5495	-0.30432	-0.00016244	-2.1318	-0.0011379	-2.4362	-0.0013004	533.780848057187	12.999	0.097525	12.999	12.981	13.079	0	678	34	0.869855008346864	0.0223830071318586	0.869855008346864	352.916388555171	0	9.08120315015782						200	12	3	NaN	NaN	NaN	0.036768	1	5857	31.952	26.644	1	63724			7960	2939	6750	6931	7960	7960		
GTGVIQLYEIQHGDLK	16	Unmodified	_GTGVIQLYEIQHGDLK_			0	0	0	Q96MX6	Q96MX6	Q96MX6	WDR92	WD repeat-containing protein 92	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.984343	1769.9312	-0.076714	-4.5337E-05	-3.5069	-0.0020725	-3.5836	-0.0021179	591.316626181818	11.509	0.14194	11.509	11.465	11.607	0	675	46	0.871889544407995	0.0305095775467987	0.871889544407995	527.906863511759	0	18.4727704249914						398	17	4	NaN	NaN	NaN	0.00078282	1	26420	78.157	73.629	1	78609			7961	2587	6751	6932	7961	7961		
GTHDLWDSR	9	Unmodified	_GTHDLWDSR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	362.83695	1085.48902	-1.2099	-0.000439	-0.56644	-0.00020553	-1.7763	-0.00064453	362.836858859694	5.2657	0.10644	5.2657	5.2213	5.3278	0	900	22	0.718511479433384	0.0143891950564781	0.718511479433384	437.162646305743	0	8.75479205156205						115	13	2	NaN	NaN	NaN	0.054099	1	6344	28.096	23.189	1	27302			7962	1543	6752	6933	7962	7962		
GTHFNFAIVFTDVK	14	Unmodified	_GTHFNFAIVFTDVK_			0	0	0	O00422	O00422	O00422	SAP18	Histone deacetylase complex subunit SAP18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.612069	1594.81438	-2.5029	-0.0013331	0.085523	4.5551E-05	-2.4174	-0.0012875	532.611874538043	15.367	0.088663	15.367	15.331	15.42	0	789	19	0.794378096728713	0.0122710161104125	0.794378096728713	481.385439437059	0	7.43611701653879						137	11	4	NaN	NaN	NaN	0.056738	1	21431	24.744	23.692	1	25389			7963	77	6753	6934	7963	7963		
GTHTGVWVGVSGSETSEALSR	21	Unmodified	_GTHTGVWVGVSGSETSEALSR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.34678	2116.01851	0.86027	0.00060765	0.086667	6.1217E-05	0.94694	0.00066887	706.681306453722	9.177	0.26605	9.177	9.1326	9.3987	0	633	31	0.900343422309015	0.0203044701825483	0.900343422309015	544.442067098465	0	12.2782123394373						459	31	5	NaN	NaN	NaN	6.9977E-08	1	33561	106.58	102.73	1	149400			7964	1127	6754	6935	7964	7964		
GTIEILSDVQLIK	13	Unmodified	_GTIEILSDVQLIK_			0	0	0	P05388;Q8NHW5	P05388	P05388	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.919049	1427.82355	1.0753	0.00076878	0.85653	0.00061235	1.9319	0.0013811	714.919801319615	16.706	0.26601	16.706	16.644	16.91	0	411	73	1.04982941439551	0.048214507613157	1.04982941439551	424.553395596629	0	19.498056201799						1288	31	5	NaN	NaN	NaN	2.0123E-07	1	16341	156.57	116.07	1	919030			7965	530	6755	6936	7965	7965		
GTILISSEEGETEANNHK	18	Unmodified	_GTILISSEEGETEANNHK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.963433	1927.91231	3.0652	0.0029578	-2.0143	-0.0019438	1.0509	0.0010141	964.961530862194	6.0106	0.079814	6.0106	5.984	6.0638	0	186	37	1.1997861197946	0.0238695716917889	1.1997861197946	483.986788497977	0	9.62884730480869						284	10	4	NaN	NaN	NaN	0.00033663	1	30233	38.14	37.621	1	74161			7966	3188	6756	6937	7966	7966		
GTILISSEEGETEANNHK	18	Unmodified	_GTILISSEEGETEANNHK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.644714	1927.91231	1.9877	0.0012793	0.43086	0.00027732	2.4185	0.0015567	643.979463406847	6.0106	0.10642	6.0106	5.9751	6.0815	0	582	22	0.934820374997243	0.0141806598395486	0.934820374997243	565.649586189741	0	8.58056219641321						208	13	4	NaN	NaN	NaN	2.3665E-10	1	30234	112.95	108.4	1	58194			7967	3188	6756	6937	7967	7967		
GTINFLHADCDK	12	Unmodified	_GTINFLHADCDK_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.824626	1389.6347	2.2764	0.0015839	0.41683	0.00029004	2.6932	0.001874	695.824874484014	7.6511	0.13305	7.6511	7.6068	7.7398	-8.8818E-16	453	40	1.02166545906632	0.0261793407485973	1.02166545906632	413.27274657032	0	10.5897757025676						266	16	3	NaN	NaN	NaN	0.0013431	1	15125	76.255	66.741	1	85432			7968	2719	6757	6938	7968	7968		
GTIQVITQGTSLK	13	Unmodified	_GTIQVITQGTSLK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.387916	1344.76128	1.5361	0.0010344	2.0166	0.0013579	3.5526	0.0023923	673.389494526165	9.5051	0.20393	9.5051	9.4608	9.6647	0	465	37	1.01360860968299	0.0241772305983219	1.01360860968299	410.148435998828	0	9.78311867317905						684	24	5	NaN	NaN	NaN	2.1764E-11	1	13759	162.21	135.75	1	635290			7969	189	6758	6939	7969	7969		
GTITDAPGFDPLR	13	Unmodified	_GTITDAPGFDPLR_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.348791	1358.68303	0.64402	0.00043816	-2.4785	-0.0016862	-1.8344	-0.0012481	680.34947609573	12.05	0.26605	12.05	11.926	12.192	0	495	58	0.993446994398923	0.0383203192355812	0.993446994398923	401.948316131647	0	15.5043881326435						678	31	5	NaN	NaN	NaN	0.05715	1	14153	23.804	1.8005	1	173710			7970	1176	6759	6940	7970	7970		
GTITIQDTGIGMTQEELVSNLGTIAR	26	Unmodified	_GTITIQDTGIGMTQEELVSNLGTIAR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.80413	2717.39056	1.4373	0.0013033	-0.76598	-0.0006946	0.67129	0.00060873	907.137791129201	18.648	0.070941	18.648	18.621	18.692	0	330	64	1.10399226369747	0.0420744304878624	1.10399226369747	666.626080209032	0	25.4058960333775						494	9	6	NaN	NaN	NaN	1.7333E-14	1	37657	123.14	119.75	1	116720			7971	1608	6760	6941	7971	7971		
GTITVSAQELK	11	Unmodified	_GTITVSAQELK_			0	0	0	Q99829	Q99829	Q99829	CPNE1	Copine-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.821878	1145.6292	1.3518	0.00077567	-0.49214	-0.0002824	0.85961	0.00049327	573.821547818407	7.3231	0.097556	7.3231	7.2875	7.3851	0	606	43	0.918606045818476	0.0283868792767229	0.918606045818476	372.362959053798	0	11.5068068775505						261	12	3	NaN	NaN	NaN	0.024386	1	7951	44.57	25.314	1	91245			7972	2678	6761	6942	7972	7972		
GTIVLASPGWTTHSISDGK	19	Unmodified	_GTIVLASPGWTTHSISDGK_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.002173	1925.98469	0.94184	0.00060561	-0.15726	-0.00010112	0.78459	0.00050449	643.336454972051	11.154	0.16846	11.154	11.083	11.252	0	654	103	0.886123392477847	0.0689970052462203	0.886123392477847	536.187407858719	0	41.749631831224						1227	20	5	NaN	NaN	NaN	1.4314E-14	1	30191	169.52	161.94	1	497270			7973	1778	6762	6943	7973	7973		
GTIVLASPGWTTHSISDGK	19	Unmodified	_GTIVLASPGWTTHSISDGK_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.999622	1925.98469	1.8514	0.0017848	-0.68955	-0.00066473	1.1619	0.0011201	964.500598111508	11.154	0.088661	11.154	11.11	11.199	0	153	43	1.22165005014568	0.0278134637281793	1.22165005014568	492.810091741861	0	11.2198707067614						330	11	4	NaN	NaN	NaN	1.5916E-10	1	30192	110.9	105.52	1	74416			7974	1778	6762	6943	7974	7974		
GTLDAVLTDEEEK	13	Unmodified	_GTLDAVLTDEEEK_			0	0	0	Q8N6R0	Q8N6R0	Q8N6R0	METTL13	Methyltransferase-like protein 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.346111	1418.67767	1.8895	0.0013422	2.2499	0.0015982	4.1394	0.0029404	710.347583684969	10.321	0.097541	10.321	10.285	10.383	0	423	37	1.04178812298108	0.0241338680851122	1.04178812298108	421.327530597819	0	9.76039447923182						184	12	2	NaN	NaN	NaN	0.0058546	1	16052	48.701	36.743	1	55286			7975	2265	6763	6944	7975	7975		
GTLDPVEK	8	Unmodified	_GTLDPVEK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.732	857.449448	-0.45905	-0.00019727	1.6967	0.00072914	1.2377	0.00053188	429.732823668234	4.2194	0.41673	4.2194	4.113	4.5297	0	801	58	0.78619514174348	0.0388663471360342	0.78619514174348	319.959879333257	0	15.8175382668893						828	48	2	NaN	NaN	NaN	0.022403	1	1666	41.025	26.489	1	726640			7976	640	6764	6945	7976	7976		
GTLGGLFSQILQGEDIVR	18	Unmodified	_GTLGGLFSQILQGEDIVR_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.017815	1902.02108	1.3149	0.0012518	0.15788	0.00015031	1.4728	0.0014021	952.018177039205	19.969	0.088708	19.969	19.915	20.004	0	228	82	1.17191150690002	0.053791453867615	1.17191150690002	472.78830849661	0	21.701272097683						214	11	4	NaN	NaN	NaN	1.6132E-14	1	29651	141.87	137.32	1	97079			7977	2816	6765	6946	7977	7977		
GTLGGMFGMLK	11	Unmodified	_GTLGGMFGMLK_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.285563	1110.55657	0.48043	0.00026726	-1.1825	-0.0006578	-0.70206	-0.00039055	556.284919353207	15.083	0.15075	15.083	15.038	15.189	0	600	49	0.922661313351899	0.0324331596454394	0.922661313351899	374.1472323826	0	13.1519299044632						442	18	4	NaN	NaN	NaN	0.004801	1	7000	56.378	46.864	1	155260			7978	580	6766	6947	7978	7978		
GTLSDEHAGVISVLAQQAAK	20	Unmodified	_GTLSDEHAGVISVLAQQAAK_			0	0	0	O43504	O43504	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.028911	1994.04327	1.3216	0.001319	-4.792	-0.0047825	-3.4704	-0.0034635	998.525408783948	12.05	0.07981	12.05	12.006	12.086	0	189	43	1.1977968526266	0.0278593067113035	1.1977968526266	483.069805214486	0	11.2356196603192						270	10	4	NaN	NaN	NaN	0.0015902	1	31528	62.494	55.504	1	83123			7979	207	6767	6948	7979	7979		
GTLSDEHAGVISVLAQQAAK	20	Unmodified	_GTLSDEHAGVISVLAQQAAK_			0	0	0	O43504	O43504	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.688366	1994.04327	0.70729	0.00047083	1.864	0.0012408	2.5712	0.0017116	666.023832899807	12.041	0.12416	12.041	11.997	12.121	0	462	37	1.01562323939346	0.0241772305983219	1.01562323939346	614.396987690621	0	14.6259135023157						336	15	4	NaN	NaN	NaN	0.0087493	1	31529	73.891	66.684	1	116740			7980	207	6767	6948	7980	7980		
GTLSGWILSK	10	Unmodified	_GTLSGWILSK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.303124	1060.5917	0.37042	0.00019681	-1.8398	-0.00097748	-1.4693	-0.00078067	531.302756736662	13.034	0.31923	13.034	12.972	13.292	0	651	97	0.888155670855968	0.0651007152778963	0.888155670855968	360.36280077006	0	26.4141488474281						1564	37	5	NaN	NaN	NaN	6.4278E-05	1	5751	105.36	70.427	1	1749400			7981	870	6768	6949	7981	7981		
GTMTTGHNVADLVVILK	17	Unmodified	_GTMTTGHNVADLVVILK_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.325711	1767.9553	0.78957	0.0004661	-1.1817	-0.00069761	-0.39216	-0.0002315	590.324893214846	13.832	0.15073	13.832	13.788	13.939	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	538.990576982374	0	13.5317833781764						359	18	5	NaN	NaN	NaN	7.8319E-07	1	26357	79.235	75.499	1	134100			7982	1605	6769	6950	7982	7982		
GTMTTGHNVADLVVILK	17	Unmodified	_GTMTTGHNVADLVVILK_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.984929	1767.9553	2.2663	0.0020056	-0.58713	-0.0005196	1.6791	0.001486	884.984666197487	13.832	0.21279	13.832	13.788	14.001	0	126	58	1.23951419873743	0.0376977058621417	1.23951419873743	500.336018884951	0	15.2168648744583						866	25	5	NaN	NaN	NaN	7.5832E-14	1	26358	141.88	104.93	1	443500			7983	1605	6769	6950	7983	7983		
GTMTTGHNVADLVVILK	17	Oxidation (M)	_GTM(Oxidation (M))TTGHNVADLVVILK_	GTM(1)TTGHNVADLVVILK	GTM(78)TTGHNVADLVVILK	0	1	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.982386	1783.95022	2.6086	0.0023295	-1.9023	-0.0016988	0.70628	0.0006307	893.482074846694	12.901	0.1153	12.901	12.857	12.972	0	132	49	1.23554629282893	0.0317563156374501	1.23554629282893	498.699561993509	0	12.8176991755311						383	14	4	NaN	NaN	NaN	0.00050548	1	26811	77.696	66.214	1	96477			7984	1605	6769	6951	7984	7984	551	
GTNIQENEYVK	11	Unmodified	_GTNIQENEYVK_			0	0	0	Q9BRX2	Q9BRX2	Q9BRX2	PELO	Protein pelota homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.817324	1293.62009	2.1903	0.0014189	1.5831	0.0010256	3.7734	0.0024445	647.817202841949	4.9287	0.15073	4.9287	4.8933	5.044	0	534	25	0.967195187796614	0.0161717265136965	0.967195187796614	391.524982629968	0	6.54638797034949						167	18	3	NaN	NaN	NaN	0.0080918	1	12179	50.297	38.23	1	49869			7985	2716	6770	6952	7985	7985		
GTPGPDSSGSLGSGEFTGVK	20	Unmodified	_GTPGPDSSGSLGSGEFTGVK_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.934145	1835.85374	2.6043	0.0023932	1.6785	0.0015425	4.2829	0.0039357	918.936463413238	8.831	0.19523	8.831	8.7778	8.973	0	294	67	1.12800004657306	0.0439900595080689	1.12800004657306	455.191711430687	0	17.7516929491711						800	23	4	NaN	NaN	NaN	0.014441	1	28126	43.518	42.044	1	209990			7986	3170	6771	6953	7986	7986		
GTPLISPLIK	10	Unmodified	_GTPLISPLIK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.831517	1037.64848	0.11472	5.9633E-05	-0.40023	-0.00020805	-0.28551	-0.00014842	519.831205440353	12.201	0.16851	12.201	12.139	12.307	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	359.640096165846	0	9.89985451180422						263	20	3	NaN	NaN	NaN	0.046632	1	5185	33.426	27.196	1	80800			7987	1127	6772	6954	7987	7987		
GTPWEGGLFK	10	Unmodified	_GTPWEGGLFK_			0	0	0	P63279	P63279	P63279	UBE2I	SUMO-conjugating enzyme UBC9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.279649	1090.54475	-0.22149	-0.00012099	-1.0861	-0.0005933	-1.3076	-0.00071429	546.279079411346	12.538	0.31033	12.538	12.423	12.733	0	702	91	0.853568545818287	0.0610488599872322	0.853568545818287	346.207357157505	0	24.7614143904474						1032	36	4	NaN	NaN	NaN	0.0089179	1	6473	34.781	26.777	1	606250			7988	1437	6773	6955	7988	7988		
GTQCVEQIQELVLR	14	Unmodified	_GTQCVEQIQELVLR_			0	0	0	Q9P287	Q9P287	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.937979	1671.8614	2.7342	0.0022883	-3.0162	-0.0025244	-0.28208	-0.00023609	836.937351618859	14.258	0.21279	14.258	14.125	14.338	0	345	46	1.09397730668811	0.0300531569340965	1.09397730668811	441.78678778294	0	12.1365293260478						305	25	2	NaN	NaN	NaN	1.3283E-05	1	23673	121.71	105.42	1	189360			7989	3154	6774	6956	7989	7989		
GTQGATAGASSELDASK	17	Unmodified	_GTQGATAGASSELDASK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.868273	1549.72199	3.2007	0.0024833	-4.1868	-0.0032484	-0.98606	-0.00076505	775.864874258732	4.042	0.15075	4.042	4.0154	4.1662	0	441	73	1.02971785871157	0.0483411285821531	1.02971785871157	416.105844163564	0	19.5345025303						535	18	4	NaN	NaN	NaN	2.2967E-10	1	20037	142.03	130.67	1	152280			7990	383	6775	6957	7990	7990		
GTQGVVTNFEIFR	13	Unmodified	_GTQGVVTNFEIFR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.383165	1466.75178	1.6716	0.0012276	1.0517	0.00077233	2.7233	0.0019999	734.383845115502	14.365	0.23053	14.365	14.285	14.515	0	387	100	1.06589869032374	0.0663361617134348	1.06589869032374	430.942067508815	0	26.8196620737982						1018	27	5	NaN	NaN	NaN	4.3367E-33	1	17485	252.69	216.17	1	623470			7991	1280	6776	6958	7991	7991		
GTQLLSSGSDGLVK	14	Unmodified	_GTQLLSSGSDGLVK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.367181	1360.71981	1.6348	0.0011139	-2.8815	-0.0019634	-1.2468	-0.0008495	681.365398046491	9.0883	0.12415	9.0883	9.0085	9.1326	0	471	55	1.00957851518677	0.0362558355413685	1.00957851518677	408.468967799555	0	14.6688776529218						286	15	3	NaN	NaN	NaN	0.0038993	1	14234	50.116	43.426	1	116230			7992	1594	6777	6959	7992	7992		
GTQTYSVLEGDPSENYSK	18	Unmodified	_GTQTYSVLEGDPSENYSK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.949992	1973.88543	2.3234	0.0022954	-0.70788	-0.00069935	1.6155	0.001596	988.450972854317	8.8133	0.13315	8.8133	8.769	8.9021	0	243	58	1.16194328902838	0.0379104952093297	1.16194328902838	468.643181157811	0	15.2903289187415						545	16	5	NaN	NaN	NaN	2.3614E-19	1	31179	155.28	131.35	1	147440			7993	1218	6778	6960	7993	7993		
GTSFDAAATSGGSASSEK	18	Unmodified	_GTSFDAAATSGGSASSEK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.863188	1629.71182	3.3977	0.0027721	-2.3463	-0.0019143	1.0514	0.00085779	815.861475720061	4.3081	0.16849	4.3081	4.2637	4.4322	0	405	58	1.05384839605172	0.0381882446994148	1.05384839605172	425.671776366411	0	15.4250440750468						658	20	5	NaN	NaN	NaN	6.7728E-26	1	22455	209.7	194.17	1	270040			7994	685	6780	6961	7994	7994		
GTSYQSPHGIPIDLLDR	17	Unmodified	_GTSYQSPHGIPIDLLDR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.654885	1867.94283	0.3686	0.00022988	-1.7656	-0.0011011	-1.397	-0.00087126	623.653618615985	12.804	0.21284	12.804	12.724	12.937	0	720	67	0.841341816837976	0.0448313638255146	0.841341816837976	509.203400497684	0	27.1331846961994						958	25	5	NaN	NaN	NaN	9.9189E-05	1	28881	87.251	80.396	1	471990			7995	3325	6781	6962	7995	7995		
GTTAVLTEK	9	Unmodified	_GTTAVLTEK_			0	0	0	Q99436	Q99436	Q99436	PSMB7	Proteasome subunit beta type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.258382	918.502212	-0.38306	-0.0001763	0.78694	0.0003622	0.40389	0.00018589	460.258864697753	3.5721	0.22164	3.5721	3.4923	3.714	0	765	46	0.810730346695089	0.0306498114995809	0.810730346695089	329.599482207382	0	12.4605697087778						370	26	2	NaN	NaN	NaN	0.048758	1	2674	29.31	20.547	1	83962			7996	2638	6782	6963	7996	7996		
GTTGTQASFLQLFEGDDHK	19	Unmodified	_GTTGTQASFLQLFEGDDHK_			0	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.660476	2050.9596	0.58942	0.00040356	0.89434	0.00061232	1.4838	0.0010159	684.99544129075	15.198	0.15074	15.198	15.136	15.287	0	582	34	0.934820374997243	0.0222838959578864	0.934820374997243	565.407242322893	0	13.4779648569341						413	18	5	NaN	NaN	NaN	1.9747E-07	1	32551	103.23	91.06	1	131960			7997	913	6783	6964	7997	7997		
GTTGTQASFLQLFEGDDHK	19	Unmodified	_GTTGTQASFLQLFEGDDHK_			0	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.48708	2050.9596	1.0241	0.0010513	2.1854	0.0022433	3.2096	0.0032946	1026.99098394475	15.198	0.070933	15.198	15.163	15.234	0	123	46	1.24149774378079	0.0297531834770868	1.24149774378079	500.598222106965	0	11.9971146345327						274	9	3	NaN	NaN	NaN	0.0022766	1	32552	56.08	53.533	1	63133			7998	913	6783	6964	7998	7998		
GTVEGFEPADNK	12	Unmodified	_GTVEGFEPADNK_			0	0	0	P37108	P37108	P37108	SRP14	Signal recognition particle 14 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.296224	1262.5779	1.8352	0.0011604	-0.16018	-0.00010128	1.675	0.0010591	632.296080503892	5.4962	0.34584	5.4962	5.4076	5.7534	0	579	52	0.936845902828289	0.0344339850202118	0.936845902828289	379.337958789256	0	13.9426532699915						842	40	4	NaN	NaN	NaN	3.3946E-12	1	11286	167.06	147.81	1	507040			7999	997	6784	6965	7999	7999		
GTVEPQLEAR	10	Unmodified	_GTVEPQLEAR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.290745	1098.56694	1.8004	0.00099076	-1.8802	-0.0010347	-0.079781	-4.3903E-05	550.290447734517	5.044	0.25713	5.044	4.9819	5.2391	0	639	40	0.896281965493857	0.0264049676271125	0.896281965493857	363.498798525141	0	10.7088777606521						432	30	4	NaN	NaN	NaN	0.00096967	1	6669	86.205	60.951	1	211120			8000	792	6785	6966	8000	8000		
GTVGEPTYDAEFQHFLR	17	Unmodified	_GTVGEPTYDAEFQHFLR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.31464	1965.92209	0.32496	0.00021328	-1.7909	-0.0011754	-1.4659	-0.00096208	656.312363092904	13.123	0.29262	13.123	13.061	13.354	0	624	82	0.906433495720521	0.0547575420218167	0.906433495720521	548.3972933262	0	33.1286166891815						734	34	5	NaN	NaN	NaN	0.00038404	1	31027	50.314	37.631	1	201100			8001	1737	6786	6967	8001	8001		
GTVGEPTYDAEFQHFLR	17	Unmodified	_GTVGEPTYDAEFQHFLR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.968322	1965.92209	0.86913	0.00085519	-0.06637	-6.5306E-05	0.80276	0.00078989	984.470161564804	13.123	0.079814	13.123	13.088	13.167	1.7764E-15	102	82	1.25537494996371	0.0535410826740943	1.25537494996371	506.341017597089	0	21.5951786239118						461	10	3	NaN	NaN	NaN	5.3483E-10	1	31028	112.95	96.82	1	106800			8002	1737	6786	6967	8002	8002		
GTVGFSGAELENLVNQAALK	20	Unmodified	_GTVGFSGAELENLVNQAALK_			0	0	0	Q96TA2	Q96TA2	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.53129	2017.04802	0.79275	0.00080031	-0.30695	-0.00030987	0.48581	0.00049044	1010.03283913106	17.991	0.088652	17.991	17.938	18.027	0	171	43	1.20972836110953	0.0278363710639469	1.20972836110953	487.843281966279	0	11.2254842115232						291	11	4	NaN	NaN	NaN	1.5887E-07	1	31936	77.696	73.39	1	75236			8003	2634	6787	6968	8003	8003		
GTVLLADNVICPGAPDFLAHVR	22	Unmodified	_GTVLLADNVICPGAPDFLAHVR_			0	0	0	P21964	P21964	P21964	COMT	Catechol O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.079088	2334.21544	1.2017	0.0009362	1.0339	0.00080551	2.2356	0.0017417	779.413453906613	16.599	0.23942	16.599	16.537	16.777	0	411	40	1.04982941439551	0.0261323987291064	1.04982941439551	634.450220849555	0	15.7927620598789						631	28	6	NaN	NaN	NaN	3.681E-08	1	35933	105.79	103.19	1	227930			8004	797	6788	6969	8004	8004		
GTVTDFPGFDER	12	Unmodified	_GTVTDFPGFDER_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.809499	1339.60444	1.5907	0.001067	0.81824	0.00054888	2.4089	0.0016159	670.810529867768	11.225	0.35473	11.225	11.128	11.483	0	543	64	0.961130371139249	0.0424596140677734	0.961130371139249	388.928780547726	0	17.1816086743072						1818	41	6	NaN	NaN	NaN	6.1455E-17	1	13574	179.31	143.1	1	1442000			8005	591	6789	6970	8005	8005		
GTVVYGEPITASLGTDGSHYWSK	23	Unmodified	_GTVVYGEPITASLGTDGSHYWSK_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.060528	2424.15975	1.9907	0.0016106	-1.2204	-0.00098737	0.77032	0.00062323	809.393283272274	12.981	0.079818	12.981	12.955	13.034	0	420	40	1.04379886199097	0.0261360051694259	1.04379886199097	630.667302473372	0	15.7914752332568						128	10	2	NaN	NaN	NaN	0.02251	1	36460	12.615	11.804	1	37869			8006	1889	6790	6971	8006	8006		
GTVVYGEPITASLGTDGSHYWSK	23	Unmodified	_GTVVYGEPITASLGTDGSHYWSK_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.060528	2424.15975	2.4111	0.0019507	2.461	0.0019911	4.8721	0.0039418	809.397565926369	12.981	0.11529	12.981	12.919	13.034	0	357	94	1.08596037261705	0.062229876704917	1.08596037261705	656.141436196895	0	37.5995309820746						430	14	3	NaN	NaN	NaN	0.022721	1	36461	30.392	29.639	1	98229			8007	1889	6790	6971	8007	8007		
GTWEELCNSCEMENEVLK	18	Unmodified	_GTWEELCNSCEMENEVLK_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1114.46885	2226.92315	1.5853	0.0017668	-0.033571	-3.7414E-05	1.5518	0.0017294	1114.9711673558	13.948	0.053246	13.948	13.921	13.974	0	150	28	1.22363604450103	0.0178739508793972	1.22363604450103	493.133771499515	0	7.20332557083879						140	7	4	NaN	NaN	NaN	0.053369	1	34956	24.164	23.859	1	22453			8008	443	6791	6972	8008	8008		
GTYFPTWEGLFWEK	14	Unmodified	_GTYFPTWEGLFWEK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.919581	1759.82461	1.4726	0.0012973	-3.9523	-0.0034817	-2.4797	-0.0021844	881.417278460828	19.321	0.15077	19.321	19.259	19.41	0	324	49	1.1079963157843	0.0320368379647857	1.1079963157843	447.264267405272	0	12.9322928769475						309	18	4	NaN	NaN	NaN	0.00020515	1	26137	66.953	58.579	1	70019			8009	2064	6792	6973	8009	8009		
GVAFVGGFSYADVLGSAK	18	Unmodified	_GVAFVGGFSYADVLGSAK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.948869	1743.88319	-0.060645	-5.294E-05	2.0191	0.0017626	1.9585	0.0017097	872.950086308278	16.918	0.053239	16.918	16.892	16.945	0	132	25	1.23554629282893	0.0158759772941632	1.23554629282893	498.787910166149	0	6.40910468702066						94	7	3	NaN	NaN	NaN	0.053895	1	25717	29.115	25.132	1	16906			8010	141	6793	6974	8010	8010		
GVAFVGGFSYADVLGSAK	18	Unmodified	_GVAFVGGFSYADVLGSAK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.948869	1743.88319	0.89752	0.00078349	2.2982	0.0020062	3.1958	0.0027897	873.453437128949	16.927	0.20396	16.927	16.874	17.078	0	249	52	1.15795408347545	0.0339245776716619	1.15795408347545	467.4640678739	0	13.6952935402256						546	24	4	NaN	NaN	NaN	5.0124E-05	1	25718	72.327	68.822	1	175060			8011	141	6793	6974	8011	8011		
GVAINMVTEEDK	12	Unmodified	_GVAINMVTEEDK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.321385	1304.62822	1.7857	0.0011666	0.8253	0.00053919	2.611	0.0017058	653.322430324845	8.3608	0.34595	8.3608	8.2188	8.5648	0	543	49	0.961130371139249	0.0323524136219553	0.961130371139249	389.035233594179	0	13.0952357439648						818	40	4	NaN	NaN	NaN	1.176E-16	1	12496	167.06	110.68	1	585500			8012	1311	6794	6975	8012	8012		
GVAINMVTEEDKR	13	Unmodified	_GVAINMVTEEDKR_			0	0	1	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.917052	1460.72933	-0.44281	-0.00021605	-1.5415	-0.00075213	-1.9843	-0.00096819	487.916483658511	6.7644	0.23939	6.7644	6.7111	6.9505	0	816	34	0.775960037304758	0.0225235047805306	0.775960037304758	470.595219685197	0	13.659793250553						630	28	5	NaN	NaN	NaN	5.3082E-06	1	17291	108.93	102.18	1	328670			8013	1311	6795	6976	8013	8013		
GVAINMVTEEDKR	13	Unmodified	_GVAINMVTEEDKR_			0	0	1	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.37194	1460.72933	2.4622	0.0018008	-0.71402	-0.00052221	1.7482	0.0012786	731.371920848218	6.7644	0.28371	6.7644	6.7023	6.986	0	405	49	1.05384839605172	0.0321518628889854	1.05384839605172	426.086564880688	0	12.9994758868622						959	33	5	NaN	NaN	NaN	5.5146E-16	1	17295	191.55	179.6	1	828100			8014	1311	6795	6976	8014	8014		
GVAINMVTEEDKR	13	Oxidation (M)	_GVAINM(Oxidation (M))VTEEDKR_	GVAINM(1)VTEEDKR	GVAINM(49)VTEEDKR	0	1	1	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.248691	1476.72424	-1.1192	-0.00055204	1.7741	0.00087506	0.65488	0.00032302	493.249764259797	4.6361	0.062076	4.6361	4.6095	4.6716	0	801	22	0.78619514174348	0.0143231624709025	0.78619514174348	476.754078119623	0	8.68566308414148						108	8	3	NaN	NaN	NaN	0.014037	1	17792	48.785	37.998	1	23779			8015	1311	6795	6977	8015	8015	471	
GVALSNVIHK	10	Unmodified	_GVALSNVIHK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.308741	1036.60293	1.0876	0.0005648	2.2392	0.0011628	3.3268	0.0017276	519.308931623806	6.3742	0.21279	6.3742	6.3299	6.5427	0	663	34	0.880024865079826	0.0223674774771112	0.880024865079826	357.169665693456	0	9.07813491404136						464	25	4	NaN	NaN	NaN	0.0015496	1	5166	79.059	51.322	1	254300			8016	994	6796	6978	8016	8016		
GVAMKDLLMYR	11	2 Oxidation (M)	_GVAM(Oxidation (M))KDLLM(Oxidation (M))YR_	GVAM(1)KDLLM(1)YR	GVAM(51)KDLLM(51)YR	0	2	1		REV__P52824	REV__P52824			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.838691	1327.66283	1.7625	0.0011718	-7.1048	-0.0047236	-5.3424	-0.0035518	664.833186354684	10.933	0.23058	10.933	10.853	11.083	0	522	58	0.975277694896658	0.0383786491892638	0.975277694896658	394.689880630572	0	15.5316424712022						956	27	6	NaN	NaN	NaN	0.073069	1	13213	50.834	16.054	1	461590	+		8017	3492	6797	6979	8017	8017	654	
GVAMNPVEHPFGGGNHQHIGK	21	Unmodified	_GVAMNPVEHPFGGGNHQHIGK_			0	0	0	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.356956	2182.04904	2.1254	0.001548	0.46389	0.00033788	2.5893	0.0018859	728.691914379903	5.7445	0.15071	5.7445	5.7002	5.8509	0	501	79	0.98941132619024	0.052521803817004	0.98941132619024	598.183902243226	0	31.7539295624232						878	18	5	NaN	NaN	NaN	0.00055463	1	34475	95.345	86.593	1	298410			8018	1416	6798	6980	8018	8018		
GVAQTPGSVEEDALLCGPVSK	21	Unmodified	_GVAQTPGSVEEDALLCGPVSK_			0	0	0	Q9BQP7	Q9BQP7	Q9BQP7	MGME1	Mitochondrial genome maintenance exonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.52534	2113.03613	1.4553	0.001539	-2.452	-0.002593	-0.99669	-0.001054	1057.52233015645	12.183	0.088681	12.183	12.139	12.227	0	165	46	1.21370334790578	0.0298144541275307	1.21370334790578	489.294259377278	0	12.0194455063829						261	11	4	NaN	NaN	NaN	0.00036456	1	33510	48.201	44.351	1	47799			8019	2700	6799	6981	8019	8019		
GVAYDVPNPVFLEQK	15	Unmodified	_GVAYDVPNPVFLEQK_			0	0	0	Q16850	Q16850	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.438138	1674.86172	2.1156	0.0017738	-4.3699	-0.0036639	-2.2543	-0.0018901	838.936847823094	14.054	0.097518	14.054	14.019	14.116	0	354	31	1.08796502040166	0.0200395758714129	1.08796502040166	439.35234864196	0	8.09257150716439						150	12	2	NaN	NaN	NaN	0.0057421	1	23773	33.751	21.733	1	62332			8020	1911	6800	6982	8020	8020		
GVCLIDEFDK	10	Unmodified	_GVCLIDEFDK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.286814	1194.55907	0.52153	0.00031203	-0.61757	-0.00036948	-0.096038	-5.7458E-05	598.286569430795	12.635	0.14186	12.635	12.582	12.724	0	594	43	0.926715457081489	0.0283750805572571	0.926715457081489	375.467108326259	0	11.496419277294						468	17	4	NaN	NaN	NaN	0.0038918	1	9278	57.032	48.269	1	220480			8021	1144	6801	6983	8021	8021		
GVDDLDFFIGDEAIEK	16	Unmodified	_GVDDLDFFIGDEAIEK_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.925257	1781.83596	2.1846	0.0019485	0.74884	0.00066791	2.9334	0.0026164	892.427069524356	17.787	0.24825	17.787	17.708	17.956	0	306	76	1.12000185836644	0.0499990335996718	1.12000185836644	452.066862755616	0	20.1811328181038						1068	29	5	NaN	NaN	NaN	0.00013599	1	26719	85.081	66.983	1	330920			8022	1330	6802	6984	8022	8022		
GVDEATIIDILTK	13	Unmodified	_GVDEATIIDILTK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.387582	1386.76061	1.189	0.00082559	0.98576	0.0006845	2.1747	0.0015101	694.388317593736	18.399	0.337	18.399	18.319	18.656	0	492	118	0.995464410099171	0.0785924139409255	0.995464410099171	402.682409255822	0	31.791977969167						1524	39	6	NaN	NaN	NaN	3.5993E-11	1	15057	173.07	134.06	1	2286700			8023	506	6803	6985	8023	8023		
GVDEVTIVNILTNR	14	Unmodified	_GVDEVTIVNILTNR_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.954383	1541.84132	-1.101	-0.00056697	-0.44123	-0.00022721	-1.5422	-0.00079418	514.954165371838	17.459	0.22167	17.459	17.406	17.628	0	729	34	0.835224628594324	0.0224359291106897	0.835224628594324	506.28753937739	0	13.5999717372006						456	26	4	NaN	NaN	NaN	0.065185	1	19789	16.759	13.255	1	241070			8024	558	6804	6986	8024	8024		
GVDEVTIVNILTNR	14	Unmodified	_GVDEVTIVNILTNR_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.927937	1541.84132	1.7288	0.0013345	0.23551	0.0001818	1.9643	0.0015163	771.928356209276	17.459	0.26602	17.459	17.38	17.646	0	366	82	1.07994477139643	0.0542002002501816	1.07994477139643	436.422119823944	0	21.9031258954848						1693	31	5	NaN	NaN	NaN	8.4378E-17	1	19792	201.66	173.01	1	1943200			8025	558	6804	6986	8025	8025		
GVDIVMDPLGGSDTAK	16	Unmodified	_GVDIVMDPLGGSDTAK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.890163	1573.76577	1.8267	0.0014392	-0.21008	-0.00016552	1.6166	0.0012737	787.89020969975	13.309	0.32815	13.309	13.159	13.487	0	414	61	1.04781950764076	0.0401787479336657	1.04781950764076	423.363363328565	0	16.2339121723616						713	38	3	NaN	NaN	NaN	3.1787E-06	1	20780	106.97	94.953	1	364310			8026	2647	6805	6987	8026	8026		
GVDIVMDPLGGSDTAK	16	Oxidation (M)	_GVDIVM(Oxidation (M))DPLGGSDTAK_	GVDIVM(1)DPLGGSDTAK	GVDIVM(57)DPLGGSDTAK	0	1	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.88762	1589.76069	2.151	0.001712	-1.0213	-0.00081286	1.1297	0.00089912	795.887492360956	10.809	0.15074	10.809	10.755	10.906	0	408	34	1.0518390438467	0.0221059271192692	1.0518390438467	424.950131049825	0	8.93094497800405						381	18	4	NaN	NaN	NaN	1.2368E-05	1	21268	57.042	50.666	1	87692			8027	2647	6805	6988	8027	8027	614	
GVDLQENNPASR	12	Unmodified	_GVDLQENNPASR_			0	0	0	P51148	P51148	P51148	RAB5C	Ras-related protein Rab-5C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.318022	1298.62149	2.5762	0.0016753	0.10035	6.5259E-05	2.6765	0.0017406	650.31745049474	4.8578	0.38125	4.8578	4.7425	5.1238	0	537	52	0.965173861991602	0.0343720622770389	0.965173861991602	390.690848352691	0	13.9134001649588						1008	44	5	NaN	NaN	NaN	2.6344E-06	1	12307	88.24	70.77	1	453770			8028	1179	6806	6989	8028	8028		
GVDLVLNSLAEEK	13	Unmodified	_GVDLVLNSLAEEK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.877382	1385.74021	1.7895	0.0012417	2.0903	0.0014504	3.8797	0.0026921	693.878683768105	13.841	0.38128	13.841	13.682	14.063	0	459	70	1.01763759082241	0.0463429143317576	1.01763759082241	411.654828636926	0	18.7466389113615						1236	44	7	NaN	NaN	NaN	0.004375	1	15019	64.266	49.81	1	464890			8029	1127	6807	6990	8029	8029		
GVEAVGSYAENQR	13	Unmodified	_GVEAVGSYAENQR_			0	0	0	Q12996	Q12996	Q12996	CSTF3	Cleavage stimulation factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.33113	1378.64771	1.5758	0.0010878	0.97199	0.00067099	2.5478	0.0017588	690.331755261976	5.5051	0.070926	5.5051	5.4785	5.5494	0	447	28	1.02569221487577	0.0181191516407753	1.02569221487577	414.934176659605	0	7.32993305281758						131	9	3	NaN	NaN	NaN	0.0025813	1	14763	61.577	60.075	1	25709			8030	1617	6808	6991	8030	8030		
GVEEEEEDGEMRE	13	Unmodified	_GVEEEEEDGEMRE_			0	0	1	P62306	P62306	P62306	SNRPF	Small nuclear ribonucleoprotein F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.301575	1536.5886	2.9838	0.0022955	-1.813	-0.0013948	1.1708	0.0009007	769.300373733168	4.5475	0.27485	4.5475	4.4854	4.7603	0	498	79	0.991429299781895	0.0524709829349579	0.991429299781895	400.663865946851	0	21.2049682991782						1371	32	5	NaN	NaN	NaN	2.5075E-23	1	19616	156.14	155.18	1	651940			8031	1382	6809	6992	8031	8031		
GVEEEEEDGEMRE	13	Unmodified	_GVEEEEEDGEMRE_			0	0	1	P62306	P62306	P62306	SNRPF	Small nuclear ribonucleoprotein F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.301575	1536.5886	2.4982	0.0019219	-0.39445	-0.00030345	2.1038	0.0016185	769.301395601974	4.1041	0.053223	4.1041	4.0775	4.1307	0	501	43	0.98941132619024	0.0282692223025561	0.98941132619024	399.848342208928	0	11.4243706070527						121	7	3	NaN	NaN	NaN	9.4077E-07	1	19617	125.17	119.31	1	20578			8032	1382	6809	6992	8032	8032		
GVEEEEEDGEMRE	13	Oxidation (M)	_GVEEEEEDGEM(Oxidation (M))RE_	GVEEEEEDGEM(1)RE	GVEEEEEDGEM(140)RE	0	1	1	P62306	P62306	P62306	SNRPF	Small nuclear ribonucleoprotein F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.299032	1552.58351	2.6381	0.0020506	-1.4792	-0.0011498	1.1589	0.00090079	777.298043311947	3.2883	0.11527	3.2883	3.2528	3.3681	0	510	73	0.983355730988811	0.0484347476913899	0.983355730988811	397.364555060747	0	19.5720138291315						380	14	2	NaN	NaN	NaN	9.6483E-11	1	20131	138.71	137.07	1	120880			8033	1382	6809	6993	8033	8033	491	
GVEGYGNDQTYFEEIK	16	Unmodified	_GVEGYGNDQTYFEEIK_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.917963	1847.82137	2.131	0.001971	-1.5501	-0.0014338	0.58089	0.00053728	924.914957801121	11.447	0.12417	11.447	11.385	11.509	0	288	40	1.13199748998575	0.0259815997142345	1.13199748998575	456.782660278006	0	10.4840729248399						354	15	4	NaN	NaN	NaN	4.4782E-12	1	28427	118.26	107.29	1	90060			8034	2107	6810	6994	8034	8034		
GVEITGFPEAQALGLEVFHAGTALK	25	Unmodified	_GVEITGFPEAQALGLEVFHAGTALK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	852.454989	2554.34314	1.3995	0.001193	1.9399	0.0016536	3.3393	0.0028466	852.79118833472	19.321	0.32811	19.321	19.162	19.49	0	330	61	1.10399226369747	0.0400350261714058	1.10399226369747	666.842633865181	0	24.1822911055448						755	38	3	NaN	NaN	NaN	4.2022E-07	1	37047	77.698	71.128	1	313940			8035	801	6811	6995	8035	8035		
GVESQGMLLCASIEGINR	18	Unmodified	_GVESQGMLLCASIEGINR_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.477142	1932.93973	2.1613	0.002091	1.2045	0.0011653	3.3658	0.0032563	967.979904595487	14.524	0.1685	14.524	14.48	14.648	-1.7764E-15	234	37	1.16792504164217	0.0239253701755411	1.16792504164217	471.125445742951	0	9.65117647676084						446	20	4	NaN	NaN	NaN	9.924E-07	1	30379	110.9	96.511	1	81292			8036	1251	6812	6996	8036	8036		
GVESVFDIMEMEDEER	16	Unmodified	_GVESVFDIMEMEDEER_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.908424	1913.80229	1.93	0.0018488	-0.92205	-0.00088324	1.008	0.00096557	958.409401894609	17.823	0.12411	17.823	17.779	17.903	0	276	52	1.13998907770044	0.0339525806240335	1.13998907770044	459.889232280516	0	13.6969963507249						603	15	5	NaN	NaN	NaN	7.2616E-07	1	29918	119.43	114.04	1	225290			8037	350	6813	6997	8037	8037		
GVETIANDVVSLATK	15	Unmodified	_GVETIANDVVSLATK_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.914495	1515.81444	1.1905	0.00090348	0.93468	0.00070934	2.1252	0.0016128	758.914951607652	16.67	0.24828	16.67	16.608	16.856	0	360	127	1.08395544855938	0.0843638691783186	1.08395544855938	438.109819848902	0	34.0979323242403						1684	29	4	NaN	NaN	NaN	3.7105E-08	1	19018	110.58	71.543	1	591720			8038	626	6814	6998	8038	8038		
GVEVTVGHEQEEGGK	15	Unmodified	_GVEVTVGHEQEEGGK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.873359	1553.73216	3.0831	0.0023983	-1.9646	-0.0015282	1.1185	0.00087006	777.871742650329	3.6785	0.18618	3.6785	3.6431	3.8292	0	384	49	1.06790610341098	0.0321208337760455	1.06790610341098	431.527726098147	0	12.9796339916779						481	22	4	NaN	NaN	NaN	2.2723E-06	1	20168	95.656	73.652	1	136250			8039	0	6815	6999	8039	8039		
GVEVTVGHEQEEGGK	15	Unmodified	_GVEVTVGHEQEEGGK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.917998	1553.73216	0.15645	8.1186E-05	1.7113	0.00088803	1.8678	0.00096921	518.918927586267	3.6785	0.079788	3.6785	3.6519	3.7317	0	768	49	0.808687310729125	0.0326863119165151	0.808687310729125	490.168077873207	0	19.8120911164498						228	10	3	NaN	NaN	NaN	0.00044122	1	20169	88.24	77.453	1	47830			8040	0	6815	6999	8040	8040		
GVFEAIVDQSPFVPEETMEEQK	22	Unmodified	_GVFEAIVDQSPFVPEETMEEQK_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.06495	2508.17302	0.56292	0.0004712	-0.90333	-0.00075615	-0.34042	-0.00028495	837.398911578123	18.133	0.11523	18.133	18.071	18.186	0	528	22	0.971237000454584	0.0141453664732367	0.971237000454584	586.713131662484	0	8.54505363587032						290	14	5	NaN	NaN	NaN	1.6007E-06	1	36871	74.778	74.473	1	65629			8041	1765	6816	7000	8041	8041		
GVFNVQMEPK	10	Unmodified	_GVFNVQMEPK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.792066	1147.56958	0.8222	0.00047259	1.2233	0.00070314	2.0455	0.0011757	574.792908878519	9.5494	0.11527	9.5494	9.514	9.6292	0	540	31	0.963152256458504	0.0202202547375568	0.963152256458504	390.412197232631	0	8.19624729917581						226	14	3	NaN	NaN	NaN	0.0094238	1	8000	56.378	35.72	1	62361			8042	527	6817	7001	8042	8042		
GVGAAATAVTQALNELLQHVK	21	Unmodified	_GVGAAATAVTQALNELLQHVK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.723411	2090.1484	0.12996	9.0678E-05	-3.6202	-0.0025259	-3.4903	-0.0024353	698.387267079415	20.066	0.053194	20.066	20.04	20.093	0	519	61	0.97729762293174	0.0403622812551794	0.97729762293174	591.02431014632	0	24.4092371402813						100	7	4	NaN	NaN	NaN	0.0043704	1	33192	29.408	27.566	1	33350			8043	3406	6818	7002	8043	8043		
GVGDDQLGEESEERDDHLLPM	21	Unmodified	_GVGDDQLGEESEERDDHLLPM_			0	0	1	P20645	P20645	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	781.013138	2340.01758	0.94267	0.00073624	0.43819	0.00034223	1.3809	0.0010785	781.347773798681	12.086	0.10642	12.086	12.041	12.148	0	498	97	0.991429299781895	0.064606493676434	0.991429299781895	599.14811641505	0	39.043489034399						968	13	4	NaN	NaN	NaN	1.6138E-05	1	35962	70.552	68.45	1	266280			8044	782	6819	7003	8044	8044		
GVGDGTVSWGLEDDEDMTLTR	21	Unmodified	_GVGDGTVSWGLEDDEDMTLTR_			0	0	0	Q13404;Q15819	Q13404;Q15819	Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.00243	2251.99031	1.3483	0.0015196	1.1954	0.0013472	2.5437	0.0028668	1127.50496318962	15.065	0.18623	15.065	15.012	15.198	0	111	70	1.24942920585258	0.0455965602890394	1.24942920585258	503.493835898724	0	18.3744600623853						887	22	4	NaN	NaN	NaN	8.2992E-06	1	35200	73.305	71.457	1	174380			8045	1871;1659	6820	7004	8045	8045		
GVGIISEGNETVEDIAAR	18	Unmodified	_GVGIISEGNETVEDIAAR_			0	0	0	P05023;P13637;P50993	P05023	P05023	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.465612	1828.91667	3.0969	0.0028351	-1.1361	-0.0010401	1.9608	0.001795	915.46519599399	12.937	0.23056	12.937	12.866	13.096	0	285	52	1.13399579921816	0.0339712685258369	1.13399579921816	457.624254604021	0	13.7091128977792						931	27	5	NaN	NaN	NaN	3.0199E-36	1	27941	235.6	218.84	1	561650			8046	522	6821	7005	8046	8046		
GVGLLNTGSYYEHVK	15	Unmodified	_GVGLLNTGSYYEHVK_			0	0	0	Q8N884	Q8N884	Q8N884	MB21D1	Cyclic GMP-AMP synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.920112	1635.82567	1.7641	0.0014446	0.46421	0.00038015	2.2283	0.0018248	818.92024678354	9.6026	0.053202	9.6026	9.576	9.6292	0	261	31	1.14997238118939	0.0199624904566638	1.14997238118939	464.483654066379	0	8.06302017617702						157	7	4	NaN	NaN	NaN	4.5376E-06	1	22670	101.64	95.777	1	26135			8047	2270	6822	7006	8047	8047		
GVGQADWTPDLGLR	14	Unmodified	_GVGQADWTPDLGLR_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.878247	1483.74194	0.96404	0.00071617	-1.854	-0.0013773	-0.89001	-0.00066117	743.378870094127	13.345	0.18626	13.345	13.292	13.478	0	465	70	1.01360860968299	0.0462981295067895	1.01360860968299	409.757381360078	0	18.7162975208992						466	22	4	NaN	NaN	NaN	3.738E-06	1	18026	101.64	93.17	1	96885			8048	2819	6823	7007	8048	8048		
GVGTDEACLIEILASR	16	Unmodified	_GVGTDEACLIEILASR_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.435269	1702.85598	1.6191	0.0013802	2.8872	0.0024611	4.5063	0.0038413	852.436940962734	17.894	0.23939	17.894	17.814	18.053	0	330	55	1.10399226369747	0.0360464098070588	1.10399226369747	445.764449042244	0	14.5546382306876						805	28	4	NaN	NaN	NaN	9.2352E-07	1	24585	91.939	66.326	1	313410			8049	1176	6824	7008	8049	8049		
GVIALCIEDGSIHR	14	Unmodified	_GVIALCIEDGSIHR_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.936447	1538.78751	-0.27136	-0.00013946	-1.2675	-0.00065143	-1.5389	-0.0007909	513.935846304058	10.853	0.097539	10.853	10.8	10.897	0	735	28	0.831145085810763	0.0183592202134729	0.831145085810763	503.823535717825	0	11.1289922769033						210	12	4	NaN	NaN	NaN	0.0020085	1	19691	72.922	67.771	1	62278			8050	919	6825	7009	8050	8050		
GVIDLDVFLK	10	Unmodified	_GVIDLDVFLK_			0	0	0	Q99816	Q99816	Q99816	TSG101	Tumor susceptibility gene 101 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.826432	1117.63831	-0.93373	-0.00052273	1.2549	0.0007025	0.32113	0.00017978	559.827537338311	17.991	0.062063	17.991	17.974	18.036	0	633	19	0.900343422309015	0.0121826811722527	0.900343422309015	365.06876252367	0	4.93979989143327						82	8	2	NaN	NaN	NaN	0.052154	1	7209	22.044	17.504	1	16412			8051	2677	6826	7010	8051	8051		
GVIDLIFEK	9	Unmodified	_GVIDLIFEK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.30005	1032.58555	-0.24507	-0.00012677	-2.0136	-0.0010416	-2.2587	-0.0011684	517.299130234514	16.519	0.29261	16.519	16.457	16.75	0	693	58	0.85967808974117	0.0386884208613425	0.85967808974117	348.929469687338	0	15.7030059684936						852	34	4	NaN	NaN	NaN	0.021448	1	5074	51.864	32.377	1	687000			8052	1544	6827	7011	8052	8052		
GVIFGQTSSTFTFADLAK	18	Unmodified	_GVIFGQTSSTFTFADLAK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.485816	1888.95708	0.9691	0.00091627	-0.083826	-7.9256E-05	0.88527	0.00083701	945.485541793686	17.353	0.15961	17.353	17.264	17.424	0	213	58	1.18187287897418	0.0378636312873253	1.18187287897418	476.830940431711	0	15.2762206799817						396	19	4	NaN	NaN	NaN	7.5974E-07	1	29357	69.327	62.471	1	80483			8053	1151	6828	7012	8053	8053		
GVIINTASVAAFEGQVGQAAYSASK	25	Unmodified	_GVIINTASVAAFEGQVGQAAYSASK_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1220.12935	2438.24415	0.21386	0.00026094	-1.083	-0.0013214	-0.86913	-0.0010605	1220.62966000434	16.67	0.088673	16.67	16.626	16.714	0	63	58	1.28111162701928	0.0376100012347553	1.28111162701928	516.019283935078	0	15.1489421348167						319	11	4	NaN	NaN	NaN	3.7871E-13	1	36519	96.26	94.636	1	57981			8054	2667	6829	7013	8054	8054		
GVIINTASVAAFEGQVGQAAYSASK	25	Unmodified	_GVIINTASVAAFEGQVGQAAYSASK_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.755327	2438.24415	1.34	0.0010904	3.4591	0.0028148	4.7991	0.0039053	814.090535577092	16.67	0.14189	16.67	16.617	16.759	0	300	43	1.12400150285141	0.0279975177592968	1.12400150285141	679.103676956891	0	16.9156510981265						447	17	5	NaN	NaN	NaN	3.4489E-06	1	36520	106.29	99.298	1	150370			8055	2667	6829	7013	8055	8055		
GVIQVYDLGQDGQGMSR	17	Unmodified	_GVIQVYDLGQDGQGMSR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.94125	1821.86795	1.6122	0.0014702	-0.75228	-0.00068604	0.85993	0.00078421	911.941828617513	11.846	0.19513	11.846	11.766	11.961	0	291	58	1.12999890578964	0.0379731159015164	1.12999890578964	456.024584672601	0	15.3245054654391						694	23	5	NaN	NaN	NaN	2.0055E-06	1	27768	105.78	81.036	1	213040			8056	352	6830	7014	8056	8056		
GVISDILDWK	10	Unmodified	_GVISDILDWK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.313689	1144.61282	-0.47671	-0.00027331	-3.2954	-0.0018893	-3.7721	-0.0021626	573.312575241745	17.592	0.15072	17.592	17.548	17.699	0	651	73	0.888155670855968	0.0487780987053468	0.888155670855968	360.023514762815	0	19.7727302944782						542	18	3	NaN	NaN	NaN	0.0010282	1	7925	76.605	61.023	1	124350			8057	1625	6831	7015	8057	8057		
GVITDQNSDGYCQTGTMSR	19	Unmodified	_GVITDQNSDGYCQTGTMSR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.44931	2088.88407	2.4464	0.0025576	-0.57062	-0.00059655	1.8758	0.001961	1045.44913929559	6.4806	0.053213	6.4806	6.454	6.5072	0	210	43	1.18386433251387	0.0278822707169228	1.18386433251387	477.300936426533	0	11.2413505140628						175	7	3	NaN	NaN	NaN	1.9044E-14	1	33161	113.48	95.67	1	31910			8058	718	6832	7016	8058	8058		
GVLETFSGTETNK	13	Unmodified	_GVLETFSGTETNK_			0	0	0	Q9UIJ7	Q9UIJ7	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.843539	1381.67252	1.2633	0.00087398	2.2591	0.0015629	3.5223	0.0024369	691.845535077067	8.831	0.21306	8.831	8.7245	8.9375	0	513	55	0.981336640919867	0.0363360970921059	0.981336640919867	396.981910475569	0	14.6991079731098						443	17	3	NaN	NaN	NaN	0.00039703	1	14877	61.577	52.6	1	135110			8059	3239	6833	7017	8059	8059		
GVLFYGPPGCGK	12	Unmodified	_GVLFYGPPGCGK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.313166	1250.61178	1.8063	0.0011313	1.7373	0.0010881	3.5435	0.0022194	626.314907371775	10.117	0.33692	10.117	9.9484	10.285	0	567	70	0.944945209309785	0.0465420303421138	0.944945209309785	382.657042736731	0	18.847268093655						1065	39	3	NaN	NaN	NaN	0.0063982	1	10932	23.053	19.445	1	570480			8060	1265	6834	7018	8060	8060		
GVLHQFSGTETNK	13	Unmodified	_GVLHQFSGTETNK_			0	0	0	P27144	P27144	P27144	AK4	Adenylate kinase 4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.357148	1416.69974	2.4682	0.0017508	-1.945	-0.0013797	0.52315	0.0003711	709.355536860269	4.5475	0.079814	4.5475	4.5209	4.6007	0	489	31	0.997481546940468	0.0201699767195437	0.997481546940468	403.414196881444	0	8.157398985866						190	10	3	NaN	NaN	NaN	0.0003404	1	15986	76.255	64.9	1	46079			8061	862	6835	7019	8061	8061		
GVLHQVMVLDSEALR	15	Unmodified	_GVLHQVMVLDSEALR_			0	0	0	Q9NVH1	Q9NVH1	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.950889	1665.88723	2.5112	0.0020942	-0.97489	-0.00081301	1.5363	0.0012812	833.950502559683	13.575	0.079827	13.575	13.549	13.629	0	291	31	1.12999890578964	0.0199899698231232	1.12999890578964	456.347029863918	0	8.07289574274142						179	10	3	NaN	NaN	NaN	0.0043091	1	23521	39.166	32.419	1	35360			8062	3065	6836	7020	8062	8062		
GVLLEIEDLQVNQFK	15	Unmodified	_GVLLEIEDLQVNQFK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.977627	1743.9407	1.7086	0.0014916	-0.48322	-0.00042184	1.2254	0.0010698	873.478479743655	17.539	0.14188	17.539	17.504	17.646	0	288	88	1.13199748998575	0.0579111801867771	1.13199748998575	456.985326987317	0	23.3786380694261						674	17	5	NaN	NaN	NaN	1.1544E-11	1	25728	151.66	130.3	1	230720			8063	1095	6837	7021	8063	8063		
GVLLFGPPGTGK	12	Unmodified	_GVLLFGPPGTGK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.832049	1141.64954	0.74123	0.00042386	-2.5313	-0.0014475	-1.79	-0.0010236	571.83121732565	12.671	0.32809	12.671	12.511	12.839	0	609	76	0.916577990479294	0.0507365769168755	0.916577990479294	371.556285456994	0	20.5672558711339						1003	38	4	NaN	NaN	NaN	0.040888	1	7845	37.749	28.235	1	350090			8064	981	6838	7022	8064	8064		
GVLLMLFGGVPK	12	Unmodified	_GVLLMLFGGVPK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.867577	1229.7206	0.011692	7.2008E-06	0.33701	0.00020755	0.3487	0.00021475	615.867587431019	18.931	0.15958	18.931	18.816	18.976	0	549	37	0.957085760909907	0.024267665443817	0.957085760909907	387.64527397569	0	9.82905211208595						218	19	3	NaN	NaN	NaN	0.0048913	1	10310	54.436	43.734	1	39646			8065	1757	6839	7023	8065	8065		
GVLLYGPPGTGK	12	Unmodified	_GVLLYGPPGTGK_			0	0	0	P62195;Q8NB90	P62195;Q8NB90	P62195	PSMC5;SPATA5	26S protease regulatory subunit 8;Spermatogenesis-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.829506	1157.64446	0.10766	6.2425E-05	-0.923	-0.00053518	-0.81534	-0.00047276	579.828652059948	9.3455	0.16853	9.3455	9.2656	9.4342	0	588	25	0.93076847747433	0.0162098367648951	0.93076847747433	377.246505897578	0	6.56995206511539						200	20	3	NaN	NaN	NaN	0.039335	1	8300	41.796	0	1	54929			8066	1369;2285	6840	7024	8066	8066		
GVLMAGLYPNLIQVR	15	Unmodified	_GVLMAGLYPNLIQVR_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.468718	1642.92288	1.5509	0.0012756	-1.8497	-0.0015213	-0.29875	-0.00024571	822.968053790093	17.468	0.21282	17.468	17.344	17.557	0	336	40	1.09998710857178	0.0260424797711383	1.09998710857178	444.278066519752	0	10.5183983247982						390	25	3	NaN	NaN	NaN	0.068609	1	22848	34.953	21.734	1	101660			8067	2114	6841	7025	8067	8067		
GVLQEEEDVLVNVNLVDK	18	Unmodified	_GVLQEEEDVLVNVNLVDK_			0	0	0	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.53095	2011.04735	0.38745	0.00038998	3.1976	0.0032185	3.5851	0.0036085	1007.03607283941	17.255	0.16848	17.255	17.14	17.309	0	159	28	1.21767724410157	0.0178837612372205	1.21767724410157	491.058806061986	0	7.21207403980571						224	20	3	NaN	NaN	NaN	4.0391E-12	1	31825	88.421	76.742	1	40277			8068	194	6842	7026	8068	8068		
GVMGGQSAGPQHTEAETIQK	20	Unmodified	_GVMGGQSAGPQHTEAETIQK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.993461	2024.95855	1.3928	0.00094153	0.22364	0.00015118	1.6164	0.0010927	676.327667503434	4.512	0.10642	4.512	4.4588	4.5652	0	669	28	0.875957769340875	0.0183057433537801	0.875957769340875	529.851081603544	0	11.0728145294672						238	13	4	NaN	NaN	NaN	0.00039838	1	32055	44.16	42.059	1	50410			8069	280	6843	7027	8069	8069		
GVMLAVDAVIAELK	14	Unmodified	_GVMLAVDAVIAELK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.91017	1427.80579	0.82942	0.00059296	-1.3656	-0.0009763	-0.5362	-0.00038334	714.909407508945	19.942	0.070959	19.942	19.924	19.995	0	444	55	1.02770517576159	0.0362308083382761	1.02770517576159	415.606361795343	0	14.6518231040499						208	9	4	NaN	NaN	NaN	0.0016972	1	16339	46.068	23.015	1	78726			8070	635	6844	7028	8070	8070		
GVMLAVDAVIAELK	14	Unmodified	_GVMLAVDAVIAELK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.91017	1427.80579	1.7833	0.0012749	0.5018	0.00035874	2.2851	0.0016336	714.910949161687	19.942	0.13301	19.942	19.924	20.057	0	357	64	1.08596037261705	0.042115034279625	1.08596037261705	439.16489092799	0	17.0314174459866						559	16	6	NaN	NaN	NaN	1.4343E-05	1	16340	101.45	82.122	1	693170			8071	635	6844	7028	8071	8071		
GVMLAVDAVIAELK	14	Oxidation (M)	_GVM(Oxidation (M))LAVDAVIAELK_	GVM(1)LAVDAVIAELK	GVM(66)LAVDAVIAELK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.907627	1443.8007	1.7032	0.0012313	0.57689	0.00041704	2.2801	0.0016483	722.908020106002	18.435	0.088723	18.435	18.399	18.488	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	441.549667889321	0	9.72516774938714						273	11	4	NaN	NaN	NaN	0.0067524	1	16798	65.879	50.297	1	95194			8072	635	6844	7029	8072	8072	180	
GVNAIVYMIDAADR	14	Unmodified	_GVNAIVYMIDAADR_			0	0	0	Q9NVJ2	Q9NVJ2	Q9NVJ2	ARL8B	ADP-ribosylation factor-like protein 8B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.382308	1506.75006	0.53334	0.00040234	3.8948	0.0029381	4.4281	0.0033405	754.385667815201	17.38	0.1596	17.38	17.326	17.486	0	378	55	1.07192009927972	0.0361459094054593	1.07192009927972	433.268980778984	0	14.6101387015284						335	19	3	NaN	NaN	NaN	0.00031888	1	18703	55.578	36.255	1	59448			8073	3069	6845	7030	8073	8073		
GVNCIDYYSGGDK	13	Unmodified	_GVNCIDYYSGGDK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.311548	1446.60854	1.7898	0.0012964	-0.0022234	-1.6104E-06	1.7876	0.0012948	724.311492928194	6.8264	0.16845	6.8264	6.7821	6.9505	0	516	34	0.979317271586824	0.0222161383936255	0.979317271586824	395.988783522436	0	8.98313740837347						444	20	5	NaN	NaN	NaN	2.1812E-05	1	16873	86.243	84.869	1	180800			8074	973	6846	7031	8074	8074		
GVNTFSPEGR	10	Unmodified	_GVNTFSPEGR_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.261988	1062.50942	1.2721	0.00067711	3.6158	0.0019246	4.888	0.0026017	532.261967742385	4.8844	0.32808	4.8844	4.7248	5.0529	0	702	64	0.853568545818287	0.042749015256945	0.853568545818287	346.321285458209	0	17.3447041697921						1281	38	6	NaN	NaN	NaN	0.00083655	1	5786	102.55	54.388	1	506630			8075	872	6847	7032	8075	8075		
GVNWAAFHPTMPLIVSGADDR	21	Unmodified	_GVNWAAFHPTMPLIVSGADDR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.040634	2253.10007	-0.08208	-6.1727E-05	-0.90257	-0.00067877	-0.98465	-0.0007405	752.374361694295	16.351	0.14187	16.351	16.28	16.422	0	582	43	0.934820374997243	0.028363289192291	0.934820374997243	565.066339264889	0	17.1446198885498						619	17	6	NaN	NaN	NaN	6.543E-08	1	35215	125.52	121.76	1	242460			8076	1241	6848	7033	8076	8076		
GVNWAAFHPTMPLIVSGADDR	21	Unmodified	_GVNWAAFHPTMPLIVSGADDR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.040634	2253.10007	0.31277	0.00023522	2.9337	0.0022062	3.2464	0.0024415	752.378150579341	16.342	0.13299	16.342	16.28	16.413	0	435	67	1.03374239103424	0.0442943392475985	1.03374239103424	624.861235940591	0	26.7743838382552						458	16	4	NaN	NaN	NaN	0.0072944	1	35217	24.599	18.984	1	95819			8077	1241	6848	7033	8077	8077		
GVPHPEDDHSQVEGPESLR	19	Unmodified	_GVPHPEDDHSQVEGPESLR_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.659246	2083.95591	1.0861	0.00075556	0.78844	0.00054848	1.8745	0.001304	695.994051904611	5.6203	0.11531	5.6203	5.5583	5.6736	0	669	52	0.875957769340875	0.0345679267286869	0.875957769340875	529.749026962215	0	20.9054890424711						453	14	3	NaN	NaN	NaN	0.0089766	1	33076	29.217	26.828	1	94320			8078	2069	6849	7034	8078	8078		
GVPLVYEAFNWR	12	Unmodified	_GVPLVYEAFNWR_			0	0	0	Q16822	Q16822	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.877519	1449.74048	0.59144	0.00042931	1.0624	0.00077119	1.6539	0.0012005	725.878398464554	17.495	0.10641	17.495	17.433	17.539	0	390	19	1.06389100039157	0.012046970757869	1.06389100039157	430.177522483269	0	4.87111558622183						111	13	2	NaN	NaN	NaN	0.040384	1	16981	23.836	17.97	1	21905			8079	1908	6850	7035	8079	8079		
GVPTGFILPIR	11	Unmodified	_GVPTGFILPIR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.355691	1168.69683	0.65217	0.00038175	-3.3228	-0.001945	-2.6706	-0.0015633	585.353797064434	15.464	0.15094	15.464	15.402	15.553	0	621	46	0.908462957275599	0.0304545980014471	0.908462957275599	368.164946335188	0	12.3420722320778						696	18	4	NaN	NaN	NaN	0.0023626	1	8588	60.892	36.041	1	490550			8080	656	6851	7036	8080	8080		
GVQDIVVGEGTHFLIPWVQK	20	Unmodified	_GVQDIVVGEGTHFLIPWVQK_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.403789	2221.18954	0.93279	0.00069158	-0.38053	-0.00028213	0.55226	0.00040945	741.73826410382	18.479	0.15966	18.479	18.426	18.585	0	465	43	1.01360860968299	0.0282106679353067	1.01360860968299	612.744980218036	0	17.0538657631995						761	19	6	NaN	NaN	NaN	1.8479E-12	1	34905	160.07	145.67	1	589270			8081	960	6852	7037	8081	8081		
GVQGFQDYIEK	11	Unmodified	_GVQGFQDYIEK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.31696	1282.61937	1.4243	0.00091483	1.5336	0.00098506	2.9579	0.0018999	642.317818715774	9.9839	0.10638	9.9839	9.9307	10.037	0	525	43	0.973257487423603	0.0282887809416775	0.973257487423603	394.014728291413	0	11.4524639989531						253	13	3	NaN	NaN	NaN	0.00056561	1	11837	44.57	26.234	1	101040			8082	3129	6853	7038	8082	8082		
GVQGIIVVNTEGIPIK	16	Unmodified	_GVQGIIVVNTEGIPIK_			0	0	0	Q9NP97	Q9NP97	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.985255	1635.95596	2.1167	0.0017336	0.79122	0.000648	2.9079	0.0023815	818.985917460321	14.498	0.19505	14.498	14.444	14.639	0	273	31	1.14198628764525	0.0199707283140815	1.14198628764525	461.257693009038	0	8.06634210018211						481	23	4	NaN	NaN	NaN	1.9796E-08	1	22677	104.49	97.284	1	194190			8083	2982	6854	7039	8083	8083		
GVQLQTHPNVDK	12	Unmodified	_GVQLQTHPNVDK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	445.905364	1334.69426	0.46209	0.00020605	-0.82811	-0.00036926	-0.36602	-0.00016321	445.905053372783	3.9445	0.088658	3.9445	3.9179	4.0066	0	855	70	0.749315378969369	0.0471865829833209	0.749315378969369	454.837905779581	0	28.6424744338597						314	11	3	NaN	NaN	NaN	0.0025367	1	13434	56.202	40.62	1	75663			8084	1107	6855	7040	8084	8084		
GVQLQTHPNVDK	12	Unmodified	_GVQLQTHPNVDK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.354408	1334.69426	2.9463	0.0019691	-2.7054	-0.0018082	0.24081	0.00016095	668.353096406879	3.9445	0.18613	3.9445	3.8914	4.0775	0	489	55	0.997481546940468	0.0363260498310551	0.997481546940468	403.653740104889	0	14.7001675595079						370	22	4	NaN	NaN	NaN	0.0004757	1	13435	94.66	50.925	1	114230			8085	1107	6855	7040	8085	8085		
GVQVETISPGDGR	13	Unmodified	_GVQVETISPGDGR_			0	0	0	P62942	P62942	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.836048	1313.65754	1.6018	0.0010537	0.73401	0.00048286	2.3358	0.0015366	657.837089684646	6.321	0.36358	6.321	6.2057	6.5693	0	546	58	0.959108205975751	0.0384317920683693	0.959108205975751	388.18876363584	0	15.5548558070696						970	42	5	NaN	NaN	NaN	1.7687E-08	1	12764	145.95	103.87	1	688490			8086	1418	6856	7041	8086	8086		
GVQYLNEIK	9	Unmodified	_GVQYLNEIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.292756	1062.57096	1.2154	0.00064692	1.191	0.00063394	2.4063	0.0012809	532.293559482098	8.2188	0.22181	8.2188	8.1745	8.3963	0	648	55	0.890187667287968	0.0365784873736561	0.890187667287968	361.178630425514	0	14.8411042504146						643	26	4	NaN	NaN	NaN	0.047521	1	5800	39.324	24.789	1	848210			8087	679	6857	7042	8087	8087		
GVSAAGQVVSLK	12	Unmodified	_GVSAAGQVVSLK_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.324588	1114.63462	1.0818	0.00060399	0.9786	0.00054638	2.0604	0.0011504	558.32557641145	7.2077	0.12414	7.2077	7.1014	7.2255	0	588	28	0.93076847747433	0.018242384517949	0.93076847747433	377.417820723539	0	7.39711450934374						135	15	3	NaN	NaN	NaN	0.029981	1	7131	24.689	13.987	1	43789			8088	3447	6858	7043	8088	8088		
GVSFTFGADVVSK	13	Unmodified	_GVSFTFGADVVSK_			0	0	0	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.340435	1312.66632	1.2424	0.00081668	-0.11244	-7.3912E-05	1.13	0.00074277	657.340063014709	12.963	0.23054	12.963	12.884	13.114	0	519	55	0.97729762293174	0.0363411222858506	0.97729762293174	395.553847416166	0	14.7087953580274						376	27	2	NaN	NaN	NaN	0.0073218	1	12734	54.27	29.449	1	100300			8089	1366	6859	7044	8089	8089		
GVSLTNHHFYDESK	14	Unmodified	_GVSLTNHHFYDESK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.383894	1632.75323	2.7066	0.0022123	-1.4786	-0.0012085	1.228	0.0010038	817.382461320023	5.4697	0.23054	5.4697	5.4342	5.6647	0	351	49	1.08996939197032	0.0320765843324038	1.08996939197032	440.25489905887	0	12.9562109738586						543	27	5	NaN	NaN	NaN	5.5221E-13	1	22559	165.72	142.83	1	192750			8090	694	6860	7045	8090	8090		
GVSPEPIHLK	10	Unmodified	_GVSPEPIHLK_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.808574	1075.60259	1.8381	0.00099038	4.3973	0.0023693	6.2354	0.0033597	539.313233137405	5.7091	0.20395	5.7091	5.6559	5.8598	0	618	46	0.910492137470517	0.0304377111147065	0.910492137470517	369.359537470589	0	12.347672688558						514	24	4	NaN	NaN	NaN	0.031247	1	6114	33.426	16.031	1	156980			8091	79	6861	7046	8091	8091		
GVSQTGTPVCEEDGDAGLGIR	21	Unmodified	_GVSQTGTPVCEEDGDAGLGIR_			0	0	0	Q12888	Q12888	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.49203	2116.96951	1.8762	0.0019878	-2.5728	-0.0027258	-0.69661	-0.00073805	1059.99070366828	8.9908	0.053198	8.9908	8.9642	9.0174	0	228	58	1.17191150690002	0.0378532288836511	1.17191150690002	472.440499981511	0	15.2600245619333						317	7	4	NaN	NaN	NaN	1.3884E-05	1	33574	80.049	60.851	1	63756			8092	1602	6862	7047	8092	8092		
GVSSQETAGIGASAHLVNFK	20	Unmodified	_GVSSQETAGIGASAHLVNFK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.007978	1972.0014	1.2546	0.0012383	-0.050322	-4.9669E-05	1.2043	0.0011886	987.50985569794	10.081	0.079802	10.081	10.046	10.126	0	93	25	1.26131825079847	0.015847717738108	1.26131825079847	508.727184590265	0	6.39185615683044						143	10	3	NaN	NaN	NaN	6.741E-11	1	31144	142.32	123.79	1	28876			8093	1067	6863	7048	8093	8093		
GVTECYECHPK	11	Unmodified	_GVTECYECHPK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.289562	1378.56457	1.9466	0.0013437	-0.90544	-0.00062502	1.0411	0.00071868	690.289255634799	2.9247	0.13302	2.9247	2.8892	3.0222	0	519	31	0.97729762293174	0.0202006798599824	0.97729762293174	395.356841961994	0	8.1720008393857						184	16	3	NaN	NaN	NaN	0.00020974	1	14750	90.263	80.748	1	35467			8094	3188	6864	7049	8094	8094		
GVTFNVTTVDTK	12	Unmodified	_GVTFNVTTVDTK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.337892	1280.66123	1.1972	0.00076782	0.81986	0.00052581	2.0171	0.0012936	641.338474621457	9.4076	0.2128	9.4076	9.3366	9.5494	0	531	76	0.969216233931596	0.0504842709886018	0.969216233931596	392.385057050302	0	20.4384458890558						666	25	4	NaN	NaN	NaN	2.7666E-06	1	11780	138.23	111.29	1	564090			8095	71	6865	7050	8095	8095		
GVTIASGGVLPNIHPELLAK	20	Unmodified	_GVTIASGGVLPNIHPELLAK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.572757	1985.13096	1.3714	0.0013626	-0.47187	-0.00046884	0.89952	0.00089374	994.073836210064	14.577	0.15073	14.577	14.515	14.666	0	90	91	1.26329880838669	0.0594289997864927	1.26329880838669	509.502450028398	0	23.9683761220542						1174	18	5	NaN	NaN	NaN	9.3382E-29	1	31373	168.78	168.39	1	462030			8096	324	6866	7051	8096	8096		
GVTIASGGVLPNIHPELLAK	20	Unmodified	_GVTIASGGVLPNIHPELLAK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.717597	1985.13096	1.3068	0.00086604	0.23116	0.00015319	1.538	0.0010192	663.052013560505	14.568	0.2128	14.568	14.506	14.719	-1.7764E-15	465	67	1.01360860968299	0.0443617044097231	1.01360860968299	613.197264291265	0	26.8372580140648						1033	25	5	NaN	NaN	NaN	0.00086216	1	31374	44.571	41.856	1	371120			8097	324	6866	7051	8097	8097		
GVTIIGPATVGGIK	14	Unmodified	_GVTIIGPATVGGIK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.890095	1281.76564	0.94312	0.00060538	-0.1183	-7.5938E-05	0.82481	0.00052944	641.890042182744	11.82	0.11527	11.82	11.74	11.855	0	474	76	1.00756305028564	0.0504214885729438	1.00756305028564	407.905935183928	0	20.4128411059553						416	14	3	NaN	NaN	NaN	0.0034155	1	11828	65.879	41.758	1	104080			8098	1235	6867	7052	8098	8098		
GVTIKPTVDDD	11	Unmodified	_GVTIKPTVDDD_			0	0	1	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.295693	1158.57683	0.79713	0.00046257	-0.37744	-0.00021902	0.4197	0.00024355	580.295409837442	5.9485	0.1774	5.9485	5.9041	6.0815	0	660	43	0.882057989648486	0.0284578263810398	0.882057989648486	357.500439545258	0	11.5340324095683						452	21	4	NaN	NaN	NaN	2.0656E-10	1	8317	183	167.42	1	182210			8099	1027	6868	7053	8099	8099		
GVTLPPK	7	Unmodified	_GVTLPPK_			0	0	0	E9PAV3	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	356.223614	710.432676	-1.55	-0.00055215	-1.5565	-0.00055447	-3.1065	-0.0011066	356.223099979111	8.7156	0.16869	8.7156	8.6623	8.831	0	870	28	0.739054571787983	0.0184746054874579	0.739054571787983	301.752953649476	0	7.54310572744623						253	20	3	NaN	NaN	NaN	0.060865	1	419	46.802	12.989	1	66194			8100	46	6869	7054	8100	8100		
GVTNDQVDPSVDVLK	15	Unmodified	_GVTNDQVDPSVDVLK_			0	0	0	Q9Y2P8	Q9Y2P8	Q9Y2P8	RCL1	RNA 3-terminal phosphate cyclase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.407034	1584.79952	2.0477	0.0016247	-0.15649	-0.00012416	1.8912	0.0015005	793.406332150547	9.9928	0.23052	9.9928	9.9218	10.152	0	393	115	1.0618830335572	0.0762029963754762	1.0618830335572	429.019566353978	0	30.7873611563072						681	27	4	NaN	NaN	NaN	0.0002399	1	21103	71.219	47.383	1	139620			8101	3344	6870	7055	8101	8101		
GVTSILPVLR	10	Unmodified	_GVTSILPVLR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.834591	1053.65463	-0.085635	-4.5201E-05	-2.2411	-0.0011829	-2.3268	-0.0012281	527.833412782386	14.365	0.14187	14.365	14.294	14.435	0	678	58	0.869855008346864	0.0386615689513493	0.869855008346864	352.96722441473	0	15.6879785174897						392	17	2	NaN	NaN	NaN	0.012566	1	5569	60.589	43.194	1	152670			8102	2420	6871	7056	8102	8102		
GVVDSDDLPLNVSR	14	Unmodified	_GVVDSDDLPLNVSR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.38082	1484.74709	1.6168	0.0012019	0.49449	0.0003676	2.1113	0.0015695	743.381318052909	11.483	0.36365	11.483	11.385	11.749	0	456	85	1.01965166402748	0.0563590660873043	1.01965166402748	412.197734960953	0	22.7833486721751						1163	42	3	NaN	NaN	NaN	9.3388E-12	1	18056	178.65	152.07	1	1764700			8103	700	6872	7057	8103	8103		
GVVDSEDLPLNISR	14	Unmodified	_GVVDSEDLPLNISR_			0	0	0	P08238;P07900	P08238;P07900	P08238	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.39647	1512.77839	0.7318	0.00055426	-2.1204	-0.001606	-1.3886	-0.0010517	757.394156307295	11.633	0.10649	11.633	11.571	11.678	0	459	28	1.01763759082241	0.0181291645901349	1.01763759082241	411.313150426859	0	7.32752393329855						139	13	2	NaN	NaN	NaN	0.00045065	1	18896	51.569	0	1	40967			8104	579;567	6873	7058	8104	8104		
GVVDSEDLPLNISR	14	Unmodified	_GVVDSEDLPLNISR_			0	0	0	P08238;P07900	P08238;P07900	P08238	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.39647	1512.77839	2.3733	0.0017976	0.83504	0.00063246	3.2084	0.00243	757.397191051894	12.68	0.43452	12.68	12.564	12.999	0	441	115	1.02971785871157	0.0764240338993978	1.02971785871157	416.195794036128	0	30.8893948017982						3213	50	6	NaN	NaN	NaN	5.1328E-12	1	18897	172.51	0	1	6469700			8105	579;567	6873	7058	8105	8105		
GVVEVTHDLQK	11	Unmodified	_GVVEVTHDLQK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.832777	1223.651	1.6859	0.0010332	-2.1994	-0.0013478	-0.51345	-0.00031466	612.831745990871	5.4697	0.24825	5.4697	5.4254	5.6736	0	546	43	0.959108205975751	0.0283044424712918	0.959108205975751	388.485817650893	0	11.4646860574254						707	29	5	NaN	NaN	NaN	2.6471E-11	1	10125	140.05	102.33	1	556840			8106	1164	6874	7059	8106	8106		
GVVFSVTTVDLK	12	Unmodified	_GVVFSVTTVDLK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.861003	1263.70745	0.72909	0.00046141	0.2578	0.00016315	0.98689	0.00062457	632.861313702672	13.637	0.088664	13.637	13.611	13.7	0	492	28	0.995464410099171	0.0181567430371361	0.995464410099171	403.069259133204	0	7.35176957609298						140	11	2	NaN	NaN	NaN	0.035468	1	11336	47.334	36.632	1	41775			8107	3454	6875	7060	8107	8107		
GVVHDDMECSHYMK	14	Unmodified	_GVVHDDMECSHYMK_			0	0	0	P50579	P50579	P50579	METAP2	Methionine aminopeptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.902309	1706.6851	1.3517	0.00077032	-0.50362	-0.00028702	0.84805	0.00048331	569.902220770911	4.5209	0.079787	4.5209	4.4943	4.5741	0	681	22	0.867820189810857	0.0142457083118959	0.867820189810857	525.594110028527	0	8.62789373861983						169	10	5	NaN	NaN	NaN	0.0012944	1	24666	55.754	53.083	1	41250			8108	1168	6876	7061	8108	8108		
GVVPLAGTDGETTTQGLDGLSER	23	Unmodified	_GVVPLAGTDGETTTQGLDGLSER_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.06642	2272.11828	1.6865	0.0019176	-0.29478	-0.00033518	1.3917	0.0015825	1137.56765710958	13.176	0.26601	13.176	13.07	13.336	0	120	151	1.2434810169581	0.0992251420781953	1.2434810169581	501.069621860121	0	39.9834848639375						2262	31	5	NaN	NaN	NaN	6.3471E-42	1	35385	173.35	165.7	1	979880			8109	615	6877	7062	8109	8109		
GVVPLAGTDGETTTQGLDGLSER	23	Unmodified	_GVVPLAGTDGETTTQGLDGLSER_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.06642	2272.11828	2.5821	0.002936	-0.86375	-0.00098214	1.7184	0.0019539	1137.56705420664	12.83	0.23943	12.83	12.76	12.999	0	120	139	1.2434810169581	0.0912495525334154	1.2434810169581	501.06962359469	0	36.7696638047212						2314	28	6	NaN	NaN	NaN	2.895E-32	1	35386	191.18	182.02	1	993150			8110	615	6877	7062	8110	8110		
GVVPLAGTDGETTTQGLDGLSER	23	Unmodified	_GVVPLAGTDGETTTQGLDGLSER_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.380038	2272.11828	1.4649	0.0011109	3.668	0.0027817	5.1329	0.0038927	758.384671595612	13.167	0.22169	13.167	13.114	13.336	0	438	97	1.03173026378327	0.0643304084938585	1.03173026378327	623.61300383881	0	38.8834957035438						779	26	3	NaN	NaN	NaN	0.0002065	1	35387	107.46	103.39	1	212000			8111	615	6877	7062	8111	8111		
GVVPLAGTDGETTTQGLDGLSER	23	Unmodified	_GVVPLAGTDGETTTQGLDGLSER_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.06642	2272.11828	1.5819	0.0017987	5.9279	0.0067404	7.5098	0.0085391	1137.0734701244	12.396	0.15962	12.396	12.29	12.449	0	123	136	1.24149774378079	0.0892475050798587	1.24149774378079	500.270428724794	0	35.9629228909838						1335	19	4	NaN	NaN	NaN	0.04487	1	35388	34.417	29.82	1	391690			8112	615	6877	7062	8112	8112		
GVVPVVMDCESTVQEK	16	Unmodified	_GVVPVVMDCESTVQEK_			0	0	0	P42695	P42695	P42695	NCAPD3	Condensin-2 complex subunit D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.928962	1775.84337	2.5744	0.0022885	-3.1234	-0.0027765	-0.54894	-0.00048797	889.42799162929	10.365	0.10639	10.365	10.33	10.436	0	318	40	1.11199926528787	0.0260138037074695	1.11199926528787	448.848481197271	0	10.5002374090948						320	13	4	NaN	NaN	NaN	0.029241	1	26560	38.584	37.703	1	59373			8113	1053	6878	7063	8113	8113		
GVVQLFNAVQK	11	Unmodified	_GVVQLFNAVQK_			0	0	0	Q9Y3B9	Q9Y3B9	Q9Y3B9	RRP15	RRP15-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.84823	1201.68191	0.12853	7.7358E-05	-2.5679	-0.0015455	-2.4393	-0.0014681	601.846620095358	12.547	0.11526	12.547	12.493	12.609	0	561	31	0.948993180460448	0.0202342542182106	0.948993180460448	384.467112305608	0	8.19753550300379						165	14	2	NaN	NaN	NaN	0.050083	1	9523	48.157	38.643	1	41942			8114	3382	6879	7064	8114	8114		
GVVTLLSDYEVCK	13	Unmodified	_GVVTLLSDYEVCK_			0	0	0	Q9UKD2	Q9UKD2	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.879067	1481.74358	2.0656	0.0015324	0.23149	0.00017174	2.2971	0.0017041	741.878749353185	13.877	0.2128	13.877	13.77	13.983	0	417	52	1.04580932352505	0.0341731416799977	1.04580932352505	422.779974159538	0	13.8148701024404						725	25	4	NaN	NaN	NaN	2.6033E-05	1	17967	72.922	57.043	1	283270			8115	3260	6880	7065	8115	8115		
GVYPDLLATSGDYLR	15	Unmodified	_GVYPDLLATSGDYLR_			0	0	0	P61962	P61962	P61962	DCAF7	DDB1- and CUL4-associated factor 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.419945	1638.82534	2.2961	0.0018838	-2.6819	-0.0022003	-0.38577	-0.0003165	820.417872931995	15.535	0.15962	15.535	15.482	15.642	0	342	43	1.09598084995137	0.0280515443878693	1.09598084995137	442.669221261358	0	11.3300841980109						396	19	3	NaN	NaN	NaN	0.00013041	1	22730	47.57	40.43	1	132510			8116	1356	6881	7066	8116	8116		
GVYSEETLR	9	Unmodified	_GVYSEETLR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.264196	1052.51384	1.07	0.0005642	2.4431	0.0012882	3.5131	0.0018524	527.265392012436	5.2036	0.18623	5.2036	5.1593	5.3455	0	633	37	0.900343422309015	0.0243687449926693	0.900343422309015	365.343810117508	0	9.88841582312131						312	22	3	NaN	NaN	NaN	0.0015195	1	5528	53.878	18.947	1	125060			8117	1915	6882	7067	8117	8117		
GWAPTFLGYSMQGLCK	16	Unmodified	_GWAPTFLGYSMQGLCK_			0	0	0	Q00325	Q00325	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.956742	1814.8484	-0.36391	-0.00022051	1.5969	0.00096764	1.233	0.00074713	606.292515943128	17.424	0.088662	17.424	17.38	17.468	0	588	25	0.93076847747433	0.0162098367648951	0.93076847747433	563.448224684803	0	9.81275576972087						190	11	4	NaN	NaN	NaN	0.0016799	1	27595	65.879	65.645	1	49779			8118	1497	6883	7068	8118	8118		
GWAPTFLGYSMQGLCK	16	Unmodified	_GWAPTFLGYSMQGLCK_			0	0	0	Q00325	Q00325	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.431475	1814.8484	1.4507	0.0013179	1.3407	0.0012179	2.7914	0.0025358	908.432802186025	17.424	0.1951	17.424	17.344	17.539	0	294	76	1.12800004657306	0.0499646417940307	1.12800004657306	455.231215958427	0	20.1644181734974						1449	23	6	NaN	NaN	NaN	1.3204E-08	1	27596	160.62	146.84	1	676260			8119	1497	6883	7068	8119	8119		
GWDDLFNK	8	Unmodified	_GWDDLFNK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.735074	993.455596	-1.0659	-0.00053053	-0.88871	-0.00044234	-1.9546	-0.00097287	497.734592265158	13.247	0.14187	13.247	13.194	13.336	1.7764E-15	735	31	0.831145085810763	0.0204033881937532	0.831145085810763	337.523124983647	0	8.28569579605022						323	17	3	NaN	NaN	NaN	0.0055544	1	4128	66.087	57.324	1	120970			8120	1737	6884	7069	8120	8120		
GWDENVYYTVPLVR	14	Unmodified	_GWDENVYYTVPLVR_			0	0	0	Q9BPW8	Q9BPW8	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.927937	1709.84132	1.6542	0.0014159	3.0367	0.0025992	4.6909	0.004015	855.931541930109	15.234	0.026581	15.234	15.225	15.251	0	324	37	1.1079963157843	0.0240276252834357	1.1079963157843	447.366428486624	0	9.70143379985586						64	4	2	NaN	NaN	NaN	0.071589	1	24750	22.956	22.074	1	13039			8121	2686	6885	7070	8121	8121		
GWDQGLLGMCEGEK	14	Unmodified	_GWDQGLLGMCEGEK_			0	0	0	P26885	P26885	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.347608	1578.68066	1.6605	0.0013124	-0.0015331	-1.2117E-06	1.659	0.0013112	790.347805835988	13.283	0.13305	13.283	13.23	13.363	0	429	43	1.03776581230406	0.0281639553291928	1.03776581230406	419.289858402867	0	11.3791191635266						543	16	5	NaN	NaN	NaN	1.5364E-11	1	20919	135.5	130.35	1	218390			8122	860	6886	7071	8122	8122		
GWEEALENVIK	11	Unmodified	_GWEEALENVIK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.33261	1286.65067	-0.060614	-3.9056E-05	-0.072308	-4.659E-05	-0.13292	-8.5646E-05	644.332443313182	16.892	0.11533	16.892	16.847	16.963	0	501	49	0.98941132619024	0.0322942844341361	0.98941132619024	400.541103680985	0	13.0736206342451						357	14	3	NaN	NaN	NaN	2.8059E-05	1	11960	117.3	96.025	1	100640			8123	2900	6887	7072	8123	8123		
GWEEGVAQMSVGQR	14	Unmodified	_GWEEGVAQMSVGQR_			0	0	0	P62942	P62942	P62942	FKBP1A	Peptidyl-prolyl cis-trans isomerase FKBP1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.359364	1532.70418	2.4431	0.0018747	-0.41145	-0.00031573	2.0317	0.001559	767.359685810999	10.392	0.15074	10.392	10.347	10.498	0	360	73	1.08395544855938	0.0481746253891453	1.08395544855938	438.066136448695	0	19.4691322850341						768	18	4	NaN	NaN	NaN	1.0887E-07	1	19509	117.45	108.18	1	178510			8124	1418	6888	7073	8124	8124		
GWENHVEGQK	10	Unmodified	_GWENHVEGQK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.278169	1182.54179	1.6358	0.00096886	-0.38827	-0.00022996	1.2475	0.0007389	592.277347966237	3.1552	0.070926	3.1552	3.1198	3.1907	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	364.824565964904	0	7.40525734116125						115	9	2	NaN	NaN	NaN	0.0009442	1	8933	92.428	75.032	1	40647			8125	1737	6889	7074	8125	8125		
GWFDAEGQALDGVSISDLK	19	Unmodified	_GWFDAEGQALDGVSISDLK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.48654	2006.95854	1.5996	0.0016067	0.49841	0.00050064	2.098	0.0021074	1004.98829584893	17.805	0.16846	17.805	17.761	17.929	0	186	82	1.1997861197946	0.0536807799673098	1.1997861197946	483.850529391279	0	21.6484199781925						819	20	4	NaN	NaN	NaN	8.4016E-15	1	31753	133.93	123.6	1	225230			8126	865	6890	7075	8126	8126		
GWIDWAASK	9	Unmodified	_GWIDWAASK_			0	0	0	Q9UGV2	Q9UGV2	Q9UGV2	NDRG3	Protein NDRG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.258717	1032.50288	-0.38542	-0.00019936	-1.325	-0.00068538	-1.7104	-0.00088474	517.25796844238	12.697	0.10644	12.697	12.662	12.768	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	342.314822415172	0	6.61868892066025						156	13	3	NaN	NaN	NaN	0.022642	1	5054	25.254	21.051	1	33315			8127	3206	6891	7076	8127	8127		
GWLQSSDHGQTSSLWWK	17	Unmodified	_GWLQSSDHGQTSSLWWK_			0	0	0	Q96FX8	Q96FX8	Q96FX8	PERP	p53 apoptosis effector related to PMP-22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.318384	2001.93332	-0.83063	-0.00055512	-1.2296	-0.00082178	-2.0603	-0.0013769	668.651705756169	13.274	0.070945	13.274	13.238	13.309	0	708	22	0.849494101904619	0.0142615450408974	0.849494101904619	513.883890950208	0	8.62722676961079						103	9	3	NaN	NaN	NaN	0.00012834	1	31663	50.116	38.638	1	22701			8128	2530	6892	7077	8128	8128		
GWLQSSDHGQTSSLWWK	17	Unmodified	_GWLQSSDHGQTSSLWWK_			0	0	0	Q96FX8	Q96FX8	Q96FX8	PERP	p53 apoptosis effector related to PMP-22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.97394	2001.93332	0.9752	0.00097713	1.2128	0.0012152	2.188	0.0021923	1002.47654212029	13.274	0.053177	13.274	13.247	13.3	0	150	22	1.22363604450103	0.0139019612720204	1.22363604450103	493.47724902026	0	5.60648865758151						99	7	3	NaN	NaN	NaN	0.062294	1	31664	25.705	20.318	1	16724			8129	2530	6892	7077	8129	8129		
GWLSLHTGNLDGEDHAAER	19	Unmodified	_GWLSLHTGNLDGEDHAAER_			0	0	0	Q96EL2	Q96EL2	Q96EL2	MRPS24	28S ribosomal protein S24, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	520.247609	2076.96133	-0.7127	-0.00037078	1.89	0.00098327	1.1773	0.00061249	520.249314460578	9.5317	0.088675	9.5317	9.4962	9.5849	0	723	19	0.839303037468863	0.012233526764468	0.839303037468863	676.788237183622	0	9.8647409145949						134	11	4	NaN	NaN	NaN	0.015866	1	32968	19.006	17.735	1	28065			8130	2514	6893	7078	8130	8130		
GWLTINNISLMK	12	Unmodified	_GWLTINNISLMK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.38158	1388.74861	0.053843	3.7441E-05	0.35475	0.00024669	0.4086	0.00028413	695.3818790828	16.697	0.10641	16.697	16.644	16.75	0	474	31	1.00756305028564	0.0201560438819375	1.00756305028564	407.570759271571	0	8.15334991348027						167	13	2	NaN	NaN	NaN	0.00015499	1	15114	67.881	47.647	1	51743			8131	1167	6894	7079	8131	8131		
GWNWGTVK	8	Unmodified	_GWNWGTVK_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.240327	946.466101	-1.8116	-0.00085913	-0.48738	-0.00023113	-2.299	-0.0010903	474.240047405845	9.6115	0.15074	9.6115	9.5494	9.7002	0	792	31	0.792332785124922	0.0204545420260502	0.792332785124922	321.979755855986	0	8.31209886973852						210	18	2	NaN	NaN	NaN	0.0076684	1	3175	75.243	45.933	1	67755			8132	1579	6895	7080	8132	8132		
GWNYILEK	8	Unmodified	_GWNYILEK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.768917	1021.52328	0.48566	0.00024855	0.73242	0.00037483	1.2181	0.00062338	511.768998644482	10.959	0.21281	10.959	10.879	11.092	0	672	31	0.873923798053065	0.0203383037367069	0.873923798053065	354.762089538686	0	8.2561650653991						358	25	3	NaN	NaN	NaN	0.0079735	1	4777	62.88	37.626	1	128920			8133	1067	6896	7081	8133	8133		
GWPLYLSTK	9	Unmodified	_GWPLYLSTK_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.792392	1063.57023	0.80134	0.00042695	-2.2683	-0.0012085	-1.467	-0.00078159	532.79117726751	12.857	0.23057	12.857	12.751	12.981	0	678	49	0.869855008346864	0.0325503275293179	0.869855008346864	352.92476979208	0	13.2065881551612						496	27	4	NaN	NaN	NaN	0.047521	1	5819	39.324	33.094	1	162180			8134	367	6897	7082	8134	8134		
GWQDVTATSAYK	12	Unmodified	_GWQDVTATSAYK_			0	0	0	P55327	P55327	P55327	TPD52	Tumor protein D52	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.819867	1325.62518	1.5681	0.0010409	-1.0107	-0.00067093	0.55738	0.00037	663.819379949214	8.3608	0.22165	8.3608	8.2544	8.4761	0	528	43	0.971237000454584	0.0282887809416775	0.971237000454584	393.060831090183	0	11.4485050942866						568	26	5	NaN	NaN	NaN	6.4216E-06	1	13150	112.93	105.28	1	204660			8135	1274	6898	7083	8135	8135		
GWSQDLFR	8	Unmodified	_GWSQDLFR_			0	0	0	Q8N183	Q8N183	Q8N183	NDUFAF2	Mimitin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.748516	1007.48248	-1.1877	-0.0005995	-0.47057	-0.00023752	-1.6583	-0.00083702	504.748360900387	11.695	0.15074	11.695	11.633	11.784	0	726	40	0.837263974740672	0.0265115052801159	0.837263974740672	339.943306907767	0	10.764118662596						346	18	3	NaN	NaN	NaN	0.0024533	1	4453	81.32	39.092	1	143520			8136	2238	6899	7084	8136	8136		
GWTGQESLSDSDPEMWELLQR	21	Unmodified	_GWTGQESLSDSDPEMWELLQR_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1232.5579	2463.10125	0.51505	0.00063482	3.244	0.0039984	3.759	0.0046332	1232.55816004944	17.495	0.079826	17.495	17.459	17.539	0	66	58	1.27913350869533	0.0376048516734613	1.27913350869533	515.193022163225	0	15.1460008278657						210	10	3	NaN	NaN	NaN	0.0015833	1	36634	53.193	48.359	1	77183			8137	954	6900	7085	8137	8137		
GWTGQESLSDSDPEMWELLQR	21	Unmodified	_GWTGQESLSDSDPEMWELLQR_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.041028	2463.10125	0.91003	0.00074808	3.3532	0.0027565	4.2633	0.0035046	822.378761633051	17.495	0.079826	17.495	17.459	17.539	0	423	28	1.04178812298108	0.0180991506122403	1.04178812298108	629.395683809119	0	10.9345912327724						186	10	5	NaN	NaN	NaN	7.5817E-06	1	36635	94.63	91.189	1	45989			8138	954	6900	7085	8138	8138		
GWVHDSIDYR	10	Unmodified	_GWVHDSIDYR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.293819	1246.57309	1.439	0.00089834	-1.3525	-0.00084435	0.086492	5.3996E-05	624.792853517344	6.986	0.19523	6.986	6.8707	7.066	0	540	34	0.963152256458504	0.0222468989208282	0.963152256458504	390.043826356714	0	9.00923558187679						178	23	2	NaN	NaN	NaN	0.0055642	1	10810	56.378	51.471	1	56899			8139	3238	6901	7086	8139	8139		
GYADIVQLLLAK	12	Unmodified	_GYADIVQLLLAK_			0	0	0	Q92882	Q92882	Q92882	OSTF1	Osteoclast-stimulating factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.384645	1302.75474	0.64401	0.00042014	-0.19604	-0.0001279	0.44796	0.00029224	652.384454170141	19.676	0.062044	19.676	19.649	19.712	0	510	73	0.983355730988811	0.0484481440475263	0.983355730988811	398.037359774909	0	19.6105750289173						374	8	3	NaN	NaN	NaN	3.8663E-05	1	12445	102.55	94.899	1	116710			8140	2438	6902	7087	8140	8140		
GYAEVVVASENSVHK	15	Unmodified	_GYAEVVVASENSVHK_			0	0	0	Q8N684	Q8N684	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.901919	1587.78929	2.0465	0.0016268	-0.40715	-0.00032365	1.6394	0.0013031	794.901472064246	7.5447	0.10642	7.5447	7.5003	7.6068	0	300	40	1.12400150285141	0.0259994834338622	1.12400150285141	454.109122367369	0	10.5040807990066						316	13	4	NaN	NaN	NaN	8.1986E-07	1	21202	90.689	83.549	1	108200			8141	2262	6903	7088	8141	8141		
GYAFIEFASFEDAK	14	Unmodified	_GYAFIEFASFEDAK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.874839	1593.73512	0.7775	0.00062034	-0.14231	-0.00011354	0.63519	0.0005068	797.874698355464	16.989	0.32811	16.989	16.91	17.238	0	399	106	1.0578662689527	0.0702208218925939	1.0578662689527	427.375962995512	0	28.3690786439336						1682	38	5	NaN	NaN	NaN	8.3336E-08	1	21382	119.94	110.96	1	742660			8142	764	6904	7089	8142	8142		
GYAFIEYEHER	11	Unmodified	_GYAFIEYEHER_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.325316	1412.63608	2.4357	0.0017228	0.14551	0.00010292	2.5812	0.0018257	707.325278692635	8.0325	0.22185	8.0325	7.9881	8.21	0	438	37	1.03173026378327	0.0241505321586708	1.03173026378327	417.277095322141	0	9.76753737231752						581	26	5	NaN	NaN	NaN	0.00033196	1	15834	85.716	79.025	1	312640			8143	586	6905	7090	8143	8143		
GYAFITFCGK	10	Unmodified	_GYAFITFCGK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.281334	1162.54812	0.95295	0.00055488	-1.345	-0.00078315	-0.39201	-0.00022826	582.280828813334	12.706	0.2483	12.706	12.635	12.884	0	603	46	0.920633820089869	0.0304166222504839	0.920633820089869	373.120335209952	0	12.3274422929057						624	29	4	NaN	NaN	NaN	0.0011833	1	8401	67.464	61.716	1	276240			8144	196	6906	7091	8144	8144		
GYAFNHSADFETVR	14	Unmodified	_GYAFNHSADFETVR_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.58295	1612.72702	0.10646	5.7339E-05	-0.0094387	-5.0835E-06	0.097025	5.2256E-05	538.582991387829	8.1036	0.14198	8.1036	8.0591	8.2011	0	729	40	0.835224628594324	0.0265151904858787	0.835224628594324	506.089700183924	0	16.0664141644172						452	17	5	NaN	NaN	NaN	2.6446E-06	1	21963	127.03	111.15	1	202090			8145	1331	6907	7092	8145	8145		
GYAFNHSADFETVR	14	Unmodified	_GYAFNHSADFETVR_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.370786	1612.72702	2.5195	0.0020342	1.0663	0.00086092	3.5858	0.0028951	807.371133795653	8.1036	0.1686	8.1036	8.0325	8.2011	0	384	40	1.06790610341098	0.0260963753447068	1.06790610341098	431.388258931861	0	10.5418162593392						398	20	3	NaN	NaN	NaN	0.00024023	1	21964	62.454	58.718	1	144600			8146	1331	6907	7092	8146	8146		
GYAFVHFETQEAADK	15	Unmodified	_GYAFVHFETQEAADK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.60201	1711.7842	-1.362	-0.00077852	0.38871	0.00022219	-0.97329	-0.00055633	571.602192641018	9.4164	0.26599	9.4164	9.3632	9.6292	0	765	31	0.810730346695089	0.0204289410933094	0.810730346695089	491.00595223195	0	12.3724635638727						499	31	5	NaN	NaN	NaN	0.0012013	1	24808	50.314	48.012	1	154810			8147	1653	6908	7093	8147	8147		
GYAFVHFETQEAADK	15	Unmodified	_GYAFVHFETQEAADK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.899377	1711.7842	2.439	0.00209	0.9972	0.0008545	3.4362	0.0029445	856.900246437934	9.4164	0.39013	9.4164	9.3189	9.709	0	336	58	1.09998710857178	0.0380463696733653	1.09998710857178	444.128571603528	0	15.3615253179386						920	45	5	NaN	NaN	NaN	3.8047E-08	1	24810	110.58	105.19	1	251680			8148	1653	6908	7093	8148	8148		
GYAFVTFCTK	10	Unmodified	_GYAFVTFCTK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.286617	1192.55868	0.31339	0.00018718	1.5292	0.00091334	1.8425	0.0011005	597.287548781507	11.793	0.20397	11.793	11.74	11.944	0	585	52	0.932794566565362	0.034438755237733	0.932794566565362	377.937343585945	0	13.953438557088						450	24	3	NaN	NaN	NaN	0.0319	1	9222	37.591	12.337	1	157860			8149	263	6909	7094	8149	8149		
GYAYTFITEDQAR	13	Unmodified	_GYAYTFITEDQAR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.862263	1533.70997	2.5462	0.0019551	2.8328	0.0021752	5.3789	0.0041303	767.862928202182	11.083	0.25714	11.083	10.977	11.234	0	408	97	1.0518390438467	0.0642594479765426	1.0518390438467	425.084212183009	0	25.9694455898186						1047	30	4	NaN	NaN	NaN	4.2331E-11	1	19539	144.47	133.68	1	492420			8150	2110	6910	7095	8150	8150		
GYAYVEFENPDEAEK	15	Unmodified	_GYAYVEFENPDEAEK_			0	0	0	Q15287	Q15287	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.886132	1759.75771	3.4253	0.0030173	-1.7976	-0.0015835	1.6276	0.0014338	881.386595574301	10.489	0.1685	10.489	10.41	10.578	0	345	67	1.09397730668811	0.044081013383825	1.09397730668811	441.605345441471	0	17.7941635752084						1087	20	5	NaN	NaN	NaN	2.3018E-08	1	26124	136.06	132.32	1	511880			8151	1829	6911	7096	8151	8151		
GYDAPLCNLLLFK	13	Unmodified	_GYDAPLCNLLLFK_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.39997	1522.78539	1.1039	0.00084159	-0.10491	-7.9986E-05	0.99896	0.00076161	762.400630615582	18.55	0.11528	18.55	18.497	18.612	0	414	43	1.04781950764076	0.0281406425229616	1.04781950764076	423.486965509891	0	11.3733283477228						341	14	4	NaN	NaN	NaN	0.0079854	1	19204	56.202	48.201	1	101290			8152	260	6912	7097	8152	8152		
GYDFESETDTETIAK	15	Unmodified	_GYDFESETDTETIAK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.375597	1704.73664	2.3775	0.0020289	1.1935	0.0010185	3.571	0.0030474	853.376829914368	9.2656	0.18624	9.2656	9.2213	9.4076	0	333	79	1.10198982404297	0.0521029328719234	1.10198982404297	444.951957113118	0	21.0376733495061						934	22	5	NaN	NaN	NaN	2.8399E-24	1	24615	181.87	179.56	1	350180			8153	1558	6913	7098	8153	8153		
GYDQSAYDGK	10	Unmodified	_GYDQSAYDGK_			0	0	0	P10321	P10321	P10321	HLA-C	HLA class I histocompatibility antigen, Cw-7 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.235635	1102.45672	1.3224	0.00073026	0.65852	0.00036366	1.9809	0.0010939	552.23636844028	3.0577	0.23054	3.0577	3.0134	3.2439	0	681	34	0.867820189810857	0.0223892235225879	0.867820189810857	351.940360564939	0	9.07984337288343						276	27	3	NaN	NaN	NaN	0.008922	1	6775	46.447	34.798	1	51763			8154	624	6914	7099	8154	8154		
GYDRYEDYDYR	11	Unmodified	_GYDRYEDYDYR_			0	0	1	Q13595	Q13595	Q13595	TRA2A	Transformer-2 protein homolog alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.81277	1513.61099	1.7657	0.0013381	0.34618	0.00026234	2.1119	0.0016004	757.81294565958	5.8598	0.10642	5.8598	5.8243	5.9307	0	432	31	1.035754240522	0.0201198859944203	1.035754240522	418.633518780065	0	8.13210155630446						211	13	4	NaN	NaN	NaN	0.057755	1	18910	56.202	53.531	1	52884			8155	1688	6915	7100	8155	8155		
GYDSAGVGFDGGNDK	15	Unmodified	_GYDSAGVGFDGGNDK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.810227	1457.6059	1.3368	0.00097564	0.47946	0.00034991	1.8163	0.0013256	729.810505172007	6.2767	0.088731	6.2767	6.2411	6.3299	0	504	49	0.987393073566096	0.032289819448596	0.987393073566096	399.225712597888	0	13.0555161101806						404	11	4	NaN	NaN	NaN	4.5924E-08	1	17168	119.43	112.68	1	126140			8156	1558	6916	7101	8156	8156		
GYDVIAQAQSGTGK	14	Unmodified	_GYDVIAQAQSGTGK_			0	0	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.849155	1393.68376	1.9808	0.0013823	0.23906	0.00016683	2.2199	0.0015491	697.849909898841	7.0126	0.48772	7.0126	6.8974	7.3851	0	498	130	0.991429299781895	0.0866771579370063	0.991429299781895	401.030473331254	0	35.0606762198095						2368	56	4	NaN	NaN	NaN	0.014446	1	15264	45.939	28.47	1	2169100			8157	1311;1739	6917	7102	8157	8157		
GYDYGPHFQGILEASLEGDSGR	22	Unmodified	_GYDYGPHFQGILEASLEGDSGR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.032861	2367.07675	0.86453	0.00068301	-0.13211	-0.00010437	0.73242	0.00057864	790.36689653804	15.154	0.13299	15.154	15.118	15.251	0	573	49	0.940896116921038	0.0324062107488191	0.940896116921038	568.57116929002	0	19.5826476550983						583	16	5	NaN	NaN	NaN	1.7024E-11	1	36195	141.36	135.31	1	130470			8158	1127	6918	7103	8158	8158		
GYEEWLLNEIR	11	Unmodified	_GYEEWLLNEIR_			0	0	0	O43707;P12814;P35609	O43707;P12814	O43707	ACTN4;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.356616	1420.69868	0.55058	0.00039166	-1.5374	-0.0010937	-0.98686	-0.00070201	711.355130099412	16.856	0.17736	16.856	16.785	16.963	0	462	64	1.01562323939346	0.0423014022048924	1.01562323939346	410.740111739813	0	17.107606437565						731	21	5	NaN	NaN	NaN	1.6069E-07	1	16110	121.8	85.556	1	326220			8159	221;671	6919	7104	8159	8159		
GYESFGVHR	9	Unmodified	_GYESFGVHR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.251423	1050.48829	1.1778	0.00061982	-0.95042	-0.00050016	0.22737	0.00011965	526.250860849863	4.6805	0.2128	4.6805	4.5741	4.7869	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	356.282656171895	0	7.42730877479141						301	25	3	NaN	NaN	NaN	3.8998E-05	1	5474	97.033	79.338	1	182940			8160	1543	6920	7105	8160	8160		
GYEVIYLTEPVDEYCIQALPEFDGK	25	Unmodified	_GYEVIYLTEPVDEYCIQALPEFDGK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	983.468524	2947.38374	0.21848	0.00021487	-0.18115	-0.00017816	0.037327	3.671E-05	983.802559895139	19.188	0.062061	19.188	19.153	19.215	0	429	46	1.03776581230406	0.0301777503680323	1.03776581230406	626.387421375743	0	18.2150568190177						202	8	4	NaN	NaN	NaN	1.1264E-06	1	38143	61.211	61.087	1	37065			8161	700	6921	7106	8161	8161		
GYFDEEMNR	9	Unmodified	_GYFDEEMNR_			0	0	0	Q15149;P58107	Q15149;P58107	Q15149	PLEC;EPPK1	Plectin;Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.737488	1159.46042	1.1955	0.00069428	0.84285	0.00048947	2.0384	0.0011838	580.738165695697	7.8374	0.16855	7.8374	7.7753	7.9438	-8.8818E-16	609	37	0.916577990479294	0.0243417287857135	0.916577990479294	371.488151625345	0	9.86567856516126						417	20	4	NaN	NaN	NaN	0.004796	1	8332	72.492	71.491	1	153370			8162	1816;1298	6922	7107	8162	8162		
GYFEYIEENK	10	Unmodified	_GYFEYIEENK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.295693	1290.57683	2.1063	0.0013613	2.5593	0.0016541	4.6656	0.0030154	646.296228964793	10.835	0.37243	10.835	10.738	11.11	0	501	70	0.98941132619024	0.0464326791463908	0.98941132619024	400.52815001796	0	18.7966264248178						1316	43	6	NaN	NaN	NaN	0.00059464	1	12078	76.605	69.465	1	863160			8163	1509	6923	7108	8163	8163		
GYFSEEMNR	9	Unmodified	_GYFSEEMNR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.740031	1131.46551	0.9707	0.00055013	1.2923	0.00073243	2.263	0.0012826	566.740848220637	6.9683	0.13299	6.9683	6.9239	7.0569	0	618	34	0.910492137470517	0.0223240803246195	0.910492137470517	369.12886669485	0	9.05055862769433						228	16	3	NaN	NaN	NaN	0.00073814	1	7563	93.561	91.402	1	63071			8164	1816	6924	7109	8164	8164		
GYGFCEYQDQETALSAMR	18	Unmodified	_GYGFCEYQDQETALSAMR_			0	0	0	P33240;Q9H0L4	P33240	P33240	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.45132	2124.88809	2.047	0.0021769	0.98636	0.0010489	3.0334	0.0032259	1063.95378506221	12.813	0.10642	12.813	12.786	12.893	0	186	37	1.1997861197946	0.0238728485495119	1.1997861197946	483.666019286744	0	9.62378663703367						352	13	5	NaN	NaN	NaN	0.0029005	1	33677	54.556	53.286	1	105500			8165	945	6925	7110	8165	8165		
GYGFIEYEK	9	Unmodified	_GYGFIEYEK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.263665	1104.51278	0.38963	0.00021557	1.5858	0.00087736	1.9754	0.0010929	553.264500532479	9.3721	0.13298	9.3721	9.3189	9.4519	0	600	34	0.922661313351899	0.022302429094845	0.922661313351899	374.172314436784	0	9.04443633998744						364	16	4	NaN	NaN	NaN	0.0070072	1	6835	58.426	41.03	1	131810			8166	3225	6926	7111	8166	8166		
GYGFITFSDSECAK	14	Unmodified	_GYGFITFSDSECAK_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.348131	1580.68171	2.4069	0.0019047	0.48999	0.00038775	2.8969	0.0022924	791.348549322895	12.635	0.27488	12.635	12.582	12.857	0	333	40	1.10198982404297	0.0260353063115875	1.10198982404297	445.233465403332	0	10.5189625158403						659	32	5	NaN	NaN	NaN	1.196E-11	1	20980	154.66	152.18	1	339830			8167	1753	6927	7112	8167	8167		
GYGFVHFETQEAAER	15	Unmodified	_GYGFVHFETQEAAER_			0	0	0	P11940	P11940	P11940	PABPC1	Polyadenylate-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.937393	1739.79035	-0.72271	-0.00041985	0.49811	0.00028937	-0.2246	-0.00013048	580.937506972219	9.2568	0.25718	9.2568	9.2125	9.4696	0	732	58	0.833184998970724	0.038736824845677	0.833184998970724	504.540082424248	0	23.4573123911683						989	30	5	NaN	NaN	NaN	6.2835E-12	1	25584	244.74	233.38	1	467510			8168	661	6928	7113	8168	8168		
GYGFVSFFNK	10	Unmodified	_GYGFVSFFNK_			0	0	0	P31483	P31483	P31483	TIA1	Nucleolysin TIA-1 isoform p40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.287474	1164.5604	-0.11649	-6.7947E-05	0.7181	0.00041886	0.60161	0.00035091	583.28757986306	15.198	0.10646	15.198	15.154	15.26	0	627	37	0.90440375274676	0.0243552312702084	0.90440375274676	366.535075337731	0	9.8706429527536						290	13	4	NaN	NaN	NaN	0.0049277	1	8455	49.96	38.003	1	80618			8169	924	6929	7114	8169	8169		
GYGLFAGPCK	10	Unmodified	_GYGLFAGPCK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.260402	1068.50625	0.59864	0.00032043	-0.20479	-0.00010961	0.39385	0.00021081	535.260589109276	9.1858	0.19511	9.1858	9.1149	9.31	0	669	58	0.875957769340875	0.0386240232169095	0.875957769340875	355.379834103251	0	15.6699323228262						412	23	3	NaN	NaN	NaN	0.00087178	1	5912	75.243	66.48	1	221780			8170	1465	6930	7115	8170	8170		
GYGYGQGAGTLSTDK	15	Unmodified	_GYGYGQGAGTLSTDK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.84407	1473.67359	2.4883	0.001836	0.2553	0.00018837	2.7436	0.0020244	737.844427946943	5.7534	0.36362	5.7534	5.6825	6.0461	0	450	55	1.02367897599655	0.0362408161088767	1.02367897599655	413.85450387858	0	14.6514926286271						585	42	2	NaN	NaN	NaN	5.1583E-33	1	17689	252.75	223.44	1	704230			8171	791	6931	7116	8171	8171		
GYHYATCLEGALK	13	Unmodified	_GYHYATCLEGALK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.906376	1481.6973	-1.2654	-0.00062626	-0.33655	-0.00016656	-1.602	-0.00079282	494.906246086244	8.5914	0.097554	8.5914	8.5648	8.6623	0	819	43	0.773912161060781	0.0286602938174724	0.773912161060781	469.291001225815	0	17.3792565329276						197	12	3	NaN	NaN	NaN	0.0029095	1	17957	53.517	48.366	1	44995			8172	1558	6932	7117	8172	8172		
GYIFLEYASPAHAVDAVK	18	Unmodified	_GYIFLEYASPAHAVDAVK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.001633	1949.98871	2.1874	0.0021349	-0.66689	-0.00065089	1.5205	0.001484	976.502026802273	14.329	0.26599	14.329	14.152	14.418	-1.7764E-15	165	97	1.21370334790578	0.0636435206366788	1.21370334790578	489.561299599022	0	25.6713510164663						1445	31	4	NaN	NaN	NaN	0.00011789	1	30723	45.654	41.671	1	421790			8173	1280	6933	7118	8173	8173		
GYIPIYTPFFMR	12	Unmodified	_GYIPIYTPFFMR_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.886498	1503.75844	0.47033	0.00035411	0.81055	0.00061025	1.2809	0.00096435	752.887538668254	18.798	0.15962	18.798	18.754	18.914	0	438	58	1.03173026378327	0.0382515551187681	1.03173026378327	417.03185453386	0	15.4615188968955						309	19	2	NaN	NaN	NaN	0.0063732	1	18630	47.561	35.543	1	101760			8174	1139	6934	7119	8174	8174		
GYISPYFINTSK	12	Unmodified	_GYISPYFINTSK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.356085	1388.69762	1.1003	0.00076511	2.6892	0.00187	3.7895	0.0026351	695.3581937714	11.89	0.3636	11.89	11.775	12.139	0	468	79	1.01159370163332	0.0524057501143701	1.01159370163332	409.201342453619	0	21.1987315307171						1934	42	6	NaN	NaN	NaN	2.8182E-07	1	15102	146.88	140.19	1	2443100			8175	635	6935	7120	8175	8175		
GYIWNYGAIPQTWEDPGHNDK	21	Unmodified	_GYIWNYGAIPQTWEDPGHNDK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	821.045101	2460.11347	0.27859	0.00022874	0.092096	7.5615E-05	0.37069	0.00030435	821.379310159302	14.772	0.21281	14.772	14.701	14.914	0	594	76	0.926715457081489	0.0506522651893861	0.926715457081489	559.878424278825	0	30.6017453401481						1637	25	6	NaN	NaN	NaN	1.0612E-22	1	36622	166.48	161.88	1	1012200			8176	1822	6936	7121	8176	8176		
GYIWNYGTLPQTWEDPHEK	19	Unmodified	_GYIWNYGTLPQTWEDPHEK_			0	0	0	Q9H2U2	Q9H2U2	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.699042	2333.0753	0.79076	0.00061576	-2.2562	-0.0017569	-1.4654	-0.0011411	779.031250925393	14.595	0.10639	14.595	14.56	14.666	0	576	55	0.938871150116794	0.0364367993770142	0.938871150116794	567.395744077679	0	22.020151425207						517	13	5	NaN	NaN	NaN	1.3274E-14	1	35923	172.09	161.33	1	114850			8177	2874	6937	7122	8177	8177		
GYLGPEQLPDCLK	13	Unmodified	_GYLGPEQLPDCLK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.371409	1488.72827	1.5265	0.0011378	0.66743	0.00049749	2.1939	0.0016353	745.372229464815	12.13	0.45226	12.13	11.926	12.378	0	429	67	1.03776581230406	0.0442698808649449	1.03776581230406	419.510081909832	0	17.8958114900302						1942	52	5	NaN	NaN	NaN	2.7341E-08	1	18191	147.78	121.92	1	1892000			8178	1023	6938	7123	8178	8178		
GYLLQIFTK	9	Unmodified	_GYLLQIFTK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.815867	1081.61718	-0.3989	-0.00021613	-2.1435	-0.0011614	-2.5424	-0.0013775	541.814657989727	15.97	0.17734	15.97	15.916	16.094	0	666	40	0.877991458330206	0.0264342930913768	0.877991458330206	356.14996413061	0	10.7228520812911						431	21	3	NaN	NaN	NaN	0.010244	1	6252	51.864	45.633	1	215360			8179	939	6939	7124	8179	8179		
GYLPSHYER	9	Unmodified	_GYLPSHYER_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.272355	1120.53016	1.9626	0.0011016	-1.1649	-0.0006538	0.79774	0.00044775	561.772895759171	4.512	0.15958	4.512	4.4322	4.5918	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	370.817417732015	0	5.7577274131458						238	19	3	NaN	NaN	NaN	0.021627	1	7271	47.349	39.167	1	54650			8180	2064	6940	7125	8180	8180		
GYLTDLNSMIPTHGGDINDIK	21	Unmodified	_GYLTDLNSMIPTHGGDINDIK_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.707209	2273.0998	0.53911	0.00040903	-0.80969	-0.00061432	-0.27058	-0.00020529	759.040813483003	14.967	0.15963	14.967	14.879	15.038	0	576	43	0.938871150116794	0.028347578802108	0.938871150116794	567.484311731291	0	17.1342001975049						429	19	4	NaN	NaN	NaN	6.2964E-06	1	35395	69.201	61.553	1	83816			8181	396	6941	7126	8181	8181		
GYLVTQDELDQTLEEFK	17	Unmodified	_GYLVTQDELDQTLEEFK_			0	0	0	P19388	P19388	P19388	POLR2E	DNA-directed RNA polymerases I, II, and III subunit RPABC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.49403	2026.97352	0.97476	0.00098889	1.0441	0.0010592	2.0188	0.0020481	1014.49598314628	18.062	0.15959	18.062	17.991	18.151	0	159	91	1.21767724410157	0.0596412305832981	1.21767724410157	491.032361635838	0	24.0505227851178						855	19	5	NaN	NaN	NaN	5.616E-19	1	32099	169.52	158.04	1	225010			8182	767	6942	7127	8182	8182		
GYNDDYYEESYFTTR	15	Unmodified	_GYNDDYYEESYFTTR_			0	0	0	P50402	P50402	P50402	EMD	Emerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.889403	1921.76425	2.4253	0.0023328	-0.24143	-0.00023223	2.1838	0.0021006	962.390690548901	11.296	0.14193	11.296	11.261	11.403	0	243	64	1.16194328902838	0.0419010776122248	1.16194328902838	468.731919186566	0	16.9030388235099						652	17	5	NaN	NaN	NaN	4.1696E-17	1	30091	148.69	147.75	1	212150			8183	1162	6943	7128	8183	8183		
GYNPGLLVHPDLAYLQAEGGGDR	23	Unmodified	_GYNPGLLVHPDLAYLQAEGGGDR_			0	0	0	P19838	P19838	P19838	NFKB1	Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	804.736267	2411.18697	1.1679	0.00093988	-1.4678	-0.0011812	-0.29988	-0.00024132	805.069333998318	14.515	0.079821	14.515	14.471	14.551	0	540	40	0.963152256458504	0.0262881524128359	0.963152256458504	581.958152272022	0	15.8838901141883						214	10	4	NaN	NaN	NaN	0.00048496	1	36403	38.616	35.71	1	38794			8184	773	6944	7129	8184	8184		
GYPHLCSICDLPVHSNK	17	Unmodified	_GYPHLCSICDLPVHSNK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	499.989652	1995.9295	-0.74676	-0.00037337	-0.34002	-0.00017001	-1.0868	-0.00054338	500.24022579966	9.1238	0.15963	9.1238	9.0351	9.1947	0	741	34	0.827064408645228	0.0224452877647342	0.827064408645228	667.098827416581	0	18.104061778464						369	19	4	NaN	NaN	NaN	0.059828	1	31557	23.931	22.457	1	82935			8185	1062	6945	7130	8185	8185		
GYPHLCSICDLPVHSNK	17	Unmodified	_GYPHLCSICDLPVHSNK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.31711	1995.9295	1.2058	0.00080342	0.30096	0.00020054	1.5067	0.001004	666.317789867269	9.1326	0.20396	9.1326	9.0085	9.2125	0	567	31	0.944945209309785	0.020242660886354	0.944945209309785	571.636887303399	0	12.245632387793						489	24	3	NaN	NaN	NaN	0.0001154	1	31558	83.214	79.709	1	140570			8186	1062	6945	7130	8186	8186		
GYPTLLLFR	9	Unmodified	_GYPTLLLFR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.316035	1078.61752	0.40637	0.00021957	-1.6032	-0.00086624	-1.1968	-0.00064667	540.315222076487	16.2	0.39018	16.2	16.041	16.431	0	624	73	0.906433495720521	0.0486834828288254	0.906433495720521	367.700098418516	0	19.7487421989915						1457	45	4	NaN	NaN	NaN	0.035712	1	6189	56.014	39.557	1	636430			8187	2294	6946	7131	8187	8187		
GYPTLLWFR	9	Unmodified	_GYPTLLWFR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.813659	1151.61277	-0.33889	-0.00019547	-0.57835	-0.0003336	-0.91724	-0.00052907	576.813165799905	17.202	0.32808	17.202	17.069	17.397	0	615	64	0.912521036363781	0.0426187151879737	0.912521036363781	369.873502859034	0	17.2747069335979						1129	38	4	NaN	NaN	NaN	8.0302E-06	1	8114	142.36	128.71	1	474910			8188	2294	6947	7132	8188	8188		
GYSFGHPSSVAGEVVFNTGLGGYPEAITDPAYK	33	Unmodified	_GYSFGHPSSVAGEVVFNTGLGGYPEAITDPAYK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1129.87712	3386.60954	1.6247	0.0018358	1.5979	0.0018054	3.2226	0.0036412	1130.21308834976	16.236	0.13301	16.236	16.209	16.342	0	321	28	1.10999792833052	0.01801947676188	1.10999792833052	669.57776521182	0	10.8697869361367						190	16	3	NaN	NaN	NaN	0.00022097	1	38601	15.559	15.413	1	35561			8189	922	6948	7133	8189	8189		
GYSFTTTAER	10	Unmodified	_GYSFTTTAER_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.767103	1131.51965	1.8013	0.0010209	0.78832	0.00044679	2.5896	0.0014677	566.76704861796	5.9219	0.42568	5.9219	5.7889	6.2146	0	630	88	0.902373728295776	0.0588870993189565	0.902373728295776	365.837318205018	0	23.8738095050771						1670	49	5	NaN	NaN	NaN	3.6446E-07	1	7568	110.22	87.832	1	3268800			8190	1310;1436	6949	7134	8190	8190		
GYSLVSGGTDNHLVLVDLRPK	21	Unmodified	_GYSLVSGGTDNHLVLVDLRPK_			0	0	1	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.40597	2239.19608	2.5211	0.0018843	-0.84238	-0.0006296	1.6787	0.0012547	747.740182343847	12.857	0.24828	12.857	12.795	13.043	0	432	55	1.035754240522	0.0362058070404558	1.035754240522	626.101149825085	0	21.8859807969025						997	29	6	NaN	NaN	NaN	3.9839E-11	1	35087	144.38	120.45	1	622520			8191	954	6950	7135	8191	8191		
GYSYDLEVEQAYDLAR	16	Unmodified	_GYSYDLEVEQAYDLAR_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.439063	1890.86357	2.1402	0.0020256	0.96345	0.00091185	3.1037	0.0029374	946.43973470609	14.356	0.16845	14.356	14.311	14.48	0	246	43	1.1599488233373	0.0279244452018852	1.1599488233373	467.982155919963	0	11.2661367514893						635	20	5	NaN	NaN	NaN	1.6934E-09	1	29382	106.47	102.48	1	200930			8192	875	6951	7136	8192	8192		
GYTLADEEEDPLIYQHR	17	Unmodified	_GYTLADEEEDPLIYQHR_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.656843	2047.9487	1.1695	0.00079957	-0.28124	-0.00019227	0.88831	0.0006073	683.991268567694	10.924	0.079823	10.924	10.888	10.968	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	573.985051036696	0	11.0168487202677						151	10	3	NaN	NaN	NaN	0.0081263	1	32497	31.801	31.181	1	32190			8193	1049	6952	7137	8193	8193		
GYTLVEYETYK	11	Unmodified	_GYTLVEYETYK_			0	0	0	Q9Y5S9	Q9Y5S9	Q9Y5S9	RBM8A	RNA-binding protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.332276	1364.65	1.8534	0.0012665	1.4111	0.00096424	3.2645	0.0022307	683.333255519651	10.046	0.20392	10.046	9.9839	10.188	0	483	67	1.00151498427745	0.0443862389388772	1.00151498427745	405.194761560839	0	17.9578656193508						1060	24	6	NaN	NaN	NaN	2.9061E-05	1	14325	92.732	79.557	1	572590			8194	3442	6953	7138	8194	8194		
GYTSWAIGLSVADLAESIMK	20	Unmodified	_GYTSWAIGLSVADLAESIMK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1056.53772	2111.06089	0.80445	0.00084993	0.85126	0.00089939	1.6557	0.0017493	1056.53758090701	20.182	0.1064	20.182	20.146	20.252	0	99	67	1.25735632164274	0.0436051350877193	1.25735632164274	506.895673154562	0	17.5791491423905						186	13	4	NaN	NaN	NaN	1.5025E-22	1	33477	166.65	162.05	1	146250			8195	471	6954	7139	8195	8195		
GYTSWAIGLSVADLAESIMK	20	Oxidation (M)	_GYTSWAIGLSVADLAESIM(Oxidation (M))K_	GYTSWAIGLSVADLAESIM(1)K	GYTSWAIGLSVADLAESIM(110)K	0	1	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.53518	2127.05581	-0.041714	-4.4406E-05	2.0604	0.0021933	2.0187	0.0021489	1065.03845646859	19.995	0.0887	19.995	19.96	20.049	0	93	55	1.26131825079847	0.0356622608340909	1.26131825079847	508.467905915436	0	14.3763202308706						258	11	5	NaN	NaN	NaN	3.6923E-15	1	33708	110.14	105.32	1	66244			8196	471	6954	7140	8196	8196	69	
GYWASLDASTQTTHELTIPNNLIGCIIGR	29	Unmodified	_GYWASLDASTQTTHELTIPNNLIGCIIGR_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1067.87143	3200.59245	0.82704	0.00088317	0.92255	0.00098517	1.7496	0.0018683	1068.20655577801	19.366	0.062183	19.366	19.339	19.401	0	408	31	1.0518390438467	0.0200949105761223	1.0518390438467	634.645884810551	0	12.1246234177923						182	8	5	NaN	NaN	NaN	0.0084657	1	38462	21.134	19.59	1	33794			8197	1833	6955	7141	8197	8197		
HAACPVLVGNK	11	Unmodified	_HAACPVLVGNK_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.310958	1164.60736	1.305	0.00076125	-0.9713	-0.00056657	0.33374	0.00019468	583.310765593984	3.3681	0.12412	3.3681	3.3237	3.4479	0	645	49	0.892219381832517	0.032491664365396	0.892219381832517	361.596852568106	0	13.1681555102463						233	15	3	NaN	NaN	NaN	0.00071332	1	8466	56.014	51.107	1	45572			8198	681	6956	7142	8198	8198		
HAASTVQILGAEK	13	Unmodified	_HAASTVQILGAEK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.864608	1323.71466	1.519	0.0010069	-0.0026078	-1.7286E-06	1.5164	0.0010052	662.864507637078	5.3898	0.19505	5.3898	5.3455	5.5405	0	525	40	0.973257487423603	0.0262663358758335	0.973257487423603	393.884385247528	0	10.6301772067999						443	23	4	NaN	NaN	NaN	0.00013118	1	13106	117.21	78.198	1	170000			8199	3357	6957	7143	8199	8199		
HACVPVDFEEVHVSSNADEEDIR	23	Unmodified	_HACVPVDFEEVHVSSNADEEDIR_			0	0	0	P51553	P51553	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	664.300141	2653.17146	1.0038	0.00066681	0.88192	0.00058586	1.8857	0.0012527	664.551514887962	10.339	0.10641	10.339	10.294	10.401	0	573	22	0.940896116921038	0.014172805463205	0.940896116921038	757.616325565561	0	11.4120449695616						249	13	5	NaN	NaN	NaN	2.8963E-06	1	37453	80.128	79.613	1	62163			8200	1188	6958	7144	8200	8200		
HAEATLGSGNLR	12	Unmodified	_HAEATLGSGNLR_			0	0	0	Q7L9L4;Q9H8S9	Q7L9L4	Q7L9L4	MOB1B;MOB1A	MOB kinase activator 1B;MOB kinase activator 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.317825	1224.6211	1.8876	0.0011577	-0.0016431	-1.0077E-06	1.886	0.0011567	613.318582814919	3.5012	0.13312	3.5012	3.4567	3.5898	0	582	31	0.934820374997243	0.0202594899473871	0.934820374997243	378.644701058734	0	8.20601339027667						140	16	3	NaN	NaN	NaN	2.5016E-05	1	10140	120.65	111.89	1	32746			8201	2122	6959	7145	8201	8201		
HAEMVHTGLK	10	Unmodified	_HAEMVHTGLK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.789858	1121.56516	1.2214	0.00068615	-1.0753	-0.00060409	0.14608	8.2069E-05	561.789349723755	2.5434	0.053226	2.5434	2.5168	2.57	0	639	16	0.896281965493857	0.0101557550210465	0.896281965493857	363.406442789623	0	4.11775194428662						40	7	2	NaN	NaN	NaN	0.013739	1	7307	36.24	32.038	1	5828.1			8202	1516	6960	7146	8202	8202		
HAEMVHTGLK	10	Unmodified	_HAEMVHTGLK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	374.862331	1121.56516	-0.30845	-0.00011563	0.71583	0.00026834	0.40738	0.00015271	374.862554465853	2.5345	0.10642	2.5345	2.5079	2.6143	0	888	25	0.726732155490709	0.0164390592913533	0.726732155490709	441.986352663712	0	9.99796115048969						140	13	3	NaN	NaN	NaN	0.013829	1	7308	69.716	61.533	1	25652			8203	1516	6960	7146	8203	8203		
HAIPIIK	7	Unmodified	_HAIPIIK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	396.260531	790.506509	0.20348	8.0631E-05	1.6558	0.00065614	1.8593	0.00073677	396.261165585746	4.7958	0.2926	4.7958	4.7071	4.9997	0	699	40	0.85560534332665	0.0264783729728815	0.85560534332665	348.6718262841	0	10.7903284306179						545	34	3	NaN	NaN	NaN	0.04594	1	918	44.733	36.001	1	232820			8204	93	6961	7147	8204	8204		
HALIIYDDLSK	11	Unmodified	_HALIIYDDLSK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.350803	1286.68705	2.1046	0.0013561	1.6797	0.0010823	3.7843	0.0024384	644.352282804636	9.6558	0.32814	9.6558	9.5494	9.8776	0	525	52	0.973257487423603	0.0343387884231721	0.973257487423603	394.00145673231	0	13.9012880311536						1026	38	5	NaN	NaN	NaN	1.4236E-11	1	11970	191.67	176.08	1	1285200			8205	840	6962	7148	8205	8205		
HALLDVTPK	9	Unmodified	_HALLDVTPK_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.290017	992.565481	1.1741	0.00058389	0.43674	0.00021719	1.6109	0.00080108	497.29016950686	6.0372	0.12414	6.0372	6.0017	6.1259	0	639	28	0.896281965493857	0.0182778248645526	0.896281965493857	363.979279545245	0	7.42260781983748						153	15	2	NaN	NaN	NaN	0.0016214	1	4125	79.809	70.416	1	37062			8206	3196	6963	7149	8206	8206		
HALLEADVAAHQDR	14	Unmodified	_HALLEADVAAHQDR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.392053	1544.76955	3.2105	0.002483	-1.694	-0.0013102	1.5165	0.0011728	773.391113434187	4.8489	0.07094	4.8489	4.8223	4.8933	0	339	25	1.09798411722691	0.0160250356219411	1.09798411722691	443.704616521937	0	6.47585167565251						107	9	3	NaN	NaN	NaN	1.6817E-11	1	19883	145.95	131.95	1	20150			8207	1703	6964	7150	8207	8207		
HALLEADVAAHQDR	14	Unmodified	_HALLEADVAAHQDR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.930461	1544.76955	1.2266	0.00063286	1.9627	0.0010126	3.1893	0.0016455	516.266198057397	4.8489	0.15952	4.8489	4.7958	4.9553	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	526.037094476054	0	12.3350952011782						320	19	4	NaN	NaN	NaN	0.00012647	1	19886	99.276	79.952	1	107840			8208	1703	6964	7150	8208	8208		
HANTLITAVHDSFVAVGK	18	Unmodified	_HANTLITAVHDSFVAVGK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.339008	1878.9952	0.82844	0.00051971	0.058408	3.6642E-05	0.88684	0.00055635	627.338984377071	12.245	0.11529	12.245	12.192	12.307	0	537	25	0.965173861991602	0.0161717265136965	0.965173861991602	584.12467704968	0	9.78715327791474						212	14	4	NaN	NaN	NaN	2.6047E-05	1	29139	99.668	96.583	1	46001			8209	2005	6965	7151	8209	8209		
HANTLITAVHDSFVAVGK	18	Unmodified	_HANTLITAVHDSFVAVGK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.504874	1878.9952	0.77571	0.00072956	0.66555	0.00062595	1.4413	0.0013555	940.505224337677	12.245	0.053238	12.245	12.227	12.281	0	123	19	1.24149774378079	0.0119004551092026	1.24149774378079	500.906169505847	0	4.80146775456359						61	7	2	NaN	NaN	NaN	0.018422	1	29140	22.724	20.422	1	11916			8210	2005	6965	7151	8210	8210		
HAPGLIAALAYETANFYQK	19	Unmodified	_HAPGLIAALAYETANFYQK_			0	0	0	Q5VW32	Q5VW32	Q5VW32	BROX	BRO1 domain-containing protein BROX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.361702	2077.06328	0.51815	0.00035927	0.45924	0.00031842	0.97739	0.00067769	693.696334503594	17.867	0.11526	17.867	17.814	17.929	0	477	25	1.0055473068722	0.0161270627425241	1.0055473068722	608.133652982045	0	9.75330500161976						211	14	3	NaN	NaN	NaN	0.051829	1	32977	25.588	24.113	1	51237			8211	2011	6966	7152	8211	8211		
HAPLADQILAGNAVR	15	Unmodified	_HAPLADQILAGNAVR_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.428439	1544.84232	1.6005	0.0012379	-2.9003	-0.0022432	-1.2998	-0.0010053	773.425787577904	9.514	0.18622	9.514	9.3987	9.5849	0	384	43	1.06790610341098	0.0281096037813404	1.06790610341098	431.549662221114	0	11.3593226766477						408	22	3	NaN	NaN	NaN	0.044552	1	19895	36.952	28.577	1	102880			8212	1709	6967	7153	8212	8212		
HASNMLGELR	10	Unmodified	_HASNMLGELR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.28494	1126.55533	1.4319	0.00080802	0.63913	0.00036065	2.0711	0.0011687	564.28546245939	5.8864	0.20401	5.8864	5.8421	6.0461	0	588	55	0.93076847747433	0.0364721440966675	0.93076847747433	377.369037776676	0	14.7871981663574						470	24	4	NaN	NaN	NaN	4.965E-05	1	7432	97.277	77.044	1	227440			8213	2605	6968	7154	8213	8213		
HASPILPITEFSDIPR	16	Unmodified	_HASPILPITEFSDIPR_			0	0	0	P42167	P42167	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.324588	1791.95193	-0.22904	-0.00013704	0.17889	0.00010703	-0.050155	-3.0009E-05	598.323992271362	14.834	0.2483	14.834	14.728	14.976	0	582	67	0.934820374997243	0.0445832499965069	0.934820374997243	565.955852037598	0	26.9914433972972						838	29	5	NaN	NaN	NaN	0.00053799	1	27028	97.175	84	1	431830			8214	1043	6969	7155	8214	8214		
HASPILPITEFSDIPR	16	Unmodified	_HASPILPITEFSDIPR_			0	0	0	P42167	P42167	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.983244	1791.95193	1.2967	0.0011631	2.5666	0.0023022	3.8633	0.0034653	896.986163501669	14.834	0.31037	14.834	14.746	15.056	0	213	88	1.18187287897418	0.0578077749261638	1.18187287897418	477.019089050375	0	23.3319611828661						1330	36	4	NaN	NaN	NaN	0.029109	1	27029	46.068	37.262	1	468040			8215	1043	6969	7155	8215	8215		
HASSGSFLPSANEHLK	16	Unmodified	_HASSGSFLPSANEHLK_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.418268	1680.82198	3.3228	0.0027958	-2.3209	-0.0019528	1.0019	0.00084301	841.416376027798	5.6913	0.11535	5.6913	5.6292	5.7445	0	321	46	1.10999792833052	0.0300324663961253	1.10999792833052	448.236835465866	0	12.1276421829733						304	14	3	NaN	NaN	NaN	1.2901E-06	1	23936	94.507	86.506	1	68612			8216	377	6970	7156	8216	8216		
HASSGSFLPSANEHLK	16	Unmodified	_HASSGSFLPSANEHLK_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.281271	1680.82198	1.8095	0.0010157	1.6314	0.00091568	3.441	0.0019313	561.281994683374	5.6913	0.27491	5.6913	5.576	5.8509	0	615	46	0.912521036363781	0.0304419315193813	0.912521036363781	552.735525140049	0	18.4393962814187						611	32	4	NaN	NaN	NaN	0.0085688	1	23938	62.705	55.565	1	181710			8217	377	6970	7156	8217	8217		
HATGNYIIIMDADLSHHPK	19	Unmodified	_HATGNYIIIMDADLSHHPK_			0	0	0	O60762	O60762	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	534.019103	2132.04731	-0.44308	-0.00023661	0.19472	0.00010399	-0.24836	-0.00013263	534.270223604001	9.5849	0.12411	9.5849	9.5406	9.6647	0	732	28	0.833184998970724	0.0183566683857203	0.833184998970724	671.739767281474	0	14.7997193477078						333	15	5	NaN	NaN	NaN	0.026463	1	33767	35.182	32.793	1	98551			8218	279	6971	7157	8218	8218		
HATGNYIIIMDADLSHHPK	19	Unmodified	_HATGNYIIIMDADLSHHPK_			0	0	0	O60762	O60762	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.689712	2132.04731	1.8047	0.0012844	1.9625	0.0013967	3.7673	0.0026811	712.025568225589	9.5938	0.11525	9.5938	9.5406	9.6558	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	626.294967389307	0	10.9486415994051						261	14	4	NaN	NaN	NaN	0.0015095	1	33768	48.892	42.037	1	60240			8219	279	6971	7157	8219	8219		
HATIYPTEEELQAVQK	16	Unmodified	_HATIYPTEEELQAVQK_			0	0	0	Q96KR1	Q96KR1	Q96KR1	ZFR	Zinc finger RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.651141	1855.93159	1.0678	0.00066169	1.0752	0.00066625	2.143	0.0013279	619.985956699012	8.8487	0.16872	8.8487	8.7511	8.9198	0	597	34	0.924688525662974	0.0222962488144068	0.924688525662974	559.673799355475	0	13.494950936465						246	20	2	NaN	NaN	NaN	6.7456E-05	1	28608	145.95	140.85	1	67787			8220	2579	6972	7158	8220	8220		
HAYSWDINR	9	Unmodified	_HAYSWDINR_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.275429	1160.53631	1.1877	0.00069036	0.67756	0.00039385	1.8652	0.0010842	581.27610017139	5.9751	0.16855	5.9751	5.9219	6.0904	0	615	28	0.912521036363781	0.0182626235094615	0.912521036363781	369.839842452566	0	7.40174257069634						263	20	4	NaN	NaN	NaN	0.0010966	1	8351	105.81	78.072	1	60156			8221	2369	6973	7159	8221	8221		
HCDEVGFNAEEAHNIVK	17	Unmodified	_HCDEVGFNAEEAHNIVK_			0	0	0	P51808	P51808	P51808	DYNLT3	Dynein light chain Tctex-type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.967134	1967.87957	1.2233	0.00080365	0.71962	0.00047277	1.9429	0.0012764	657.301760331831	7.19	0.097537	7.19	7.1634	7.261	0	549	25	0.957085760909907	0.0161806815311534	0.957085760909907	579.038150787305	0	9.78933372007327						201	12	5	NaN	NaN	NaN	0.0016659	1	31064	83.474	82.295	1	60558			8222	1198	6974	7160	8222	8222		
HCGNIPVFVINYPLTLK	17	Unmodified	_HCGNIPVFVINYPLTLK_			0	0	0	Q96I59	Q96I59	Q96I59	NARS2	Probable asparagine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.360756	1984.06044	-1.3701	-0.0009075	-1.7072	-0.0011308	-3.0773	-0.0020383	662.69379625547	16.484	0.070899	16.484	16.448	16.519	0	708	22	0.849494101904619	0.0142615450408974	0.849494101904619	513.915737275238	0	8.62776141463979						129	9	4	NaN	NaN	NaN	0.0017602	1	31355	56.938	51.844	1	24579			8223	2556	6975	7161	8223	8223		
HCHEAQAVLGVLLR	14	Unmodified	_HCHEAQAVLGVLLR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.955953	1601.84603	-0.70441	-0.00037683	0.39757	0.00021268	-0.30684	-0.00016415	534.956326136556	11.837	0.097563	11.837	11.784	11.882	0	702	22	0.853568545818287	0.0142595640059772	0.853568545818287	517.234752653941	0	8.64083159778806						181	12	4	NaN	NaN	NaN	0.0033932	1	21656	54.584	53.531	1	38742			8224	1594	6976	7162	8224	8224		
HCILDVSGNAIK	12	Unmodified	_HCILDVSGNAIK_			0	0	0	Q12959;Q92796;Q15700	Q12959	Q12959	DLG1;DLG3;DLG2	Disks large homolog 1;Disks large homolog 3;Disks large homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.845361	1325.67617	1.4111	0.00093677	-2.4967	-0.0016574	-1.0856	-0.00072065	664.346143646194	8.1124	0.21298	8.1124	8.0502	8.2632	0	501	40	0.98941132619024	0.0262372893807942	0.98941132619024	400.415850750528	0	10.6182598386573						441	25	5	NaN	NaN	NaN	0.0060613	1	13156	60.547	49.192	1	90148			8225	1610	6977	7163	8225	8225		
HCIMQANAEYHQSILAK	17	Unmodified	_HCIMQANAEYHQSILAK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.992626	2012.95605	1.4448	0.0009709	-0.17136	-0.00011515	1.2734	0.00085574	672.326541488552	6.6047	0.097543	6.6047	6.5693	6.6668	0	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	582.617087978554	0	12.2296714801329						288	12	4	NaN	NaN	NaN	3.6631E-10	1	31850	119.79	111.42	1	100690			8226	2370	6978	7164	8226	8226		
HCLLTCEECK	10	Unmodified	_HCLLTCEECK_			0	0	0	Q56VL3	Q56VL3	Q56VL3	OCIAD2	OCIA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.285965	1348.55738	2.644	0.0017855	0.26335	0.00017784	2.9074	0.0019633	675.286133054832	3.7494	0.097541	3.7494	3.714	3.8115	-4.4409E-16	534	22	0.967195187796614	0.0141492814478524	0.967195187796614	391.35642378901	0	5.72522718938529						121	12	3	NaN	NaN	NaN	0.0089894	1	13848	48.157	38.643	1	22181			8227	1957	6979	7165	8227	8227		
HCNMVLENVK	10	Unmodified	_HCNMVLENVK_			0	0	0	P62316	P62316	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.299733	1242.58491	2.4091	0.0014992	-0.46	-0.00028626	1.9491	0.0012129	622.299826181796	4.8844	0.32805	4.8844	4.8046	5.1327	0	552	43	0.955063035883597	0.0283201170105575	0.955063035883597	386.781561810502	0	11.4690849466973						688	38	4	NaN	NaN	NaN	3.3353E-07	1	10695	154.81	133.54	1	453940			8228	1386	6980	7166	8228	8228		
HCNMVLENVK	10	Oxidation (M)	_HCNM(Oxidation (M))VLENVK_	HCNM(1)VLENVK	HCNM(120)VLENVK	0	1	0	P62316	P62316	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.29719	1258.57983	2.4618	0.0015517	-1.0494	-0.00066142	1.4124	0.00089023	630.297094327437	3.2617	0.11528	3.2617	3.2262	3.3415	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	392.458509462041	0	6.54650151168084						169	14	3	NaN	NaN	NaN	0.00029595	1	11159	121.8	114.65	1	30994			8229	1386	6980	7167	8229	8229	492	
HCPSAVVPVELQK	13	Unmodified	_HCPSAVVPVELQK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.387393	1462.76023	1.3636	0.00099867	-2.4872	-0.0018216	-1.1236	-0.00082292	732.386324560659	7.0747	0.15965	7.0747	7.0126	7.1723	0	450	31	1.02367897599655	0.020133781351245	1.02367897599655	413.883235163985	0	8.14028104233103						337	19	4	NaN	NaN	NaN	0.006265	1	17354	40.533	32.976	1	111660			8230	3129	6981	7168	8230	8230		
HCVDPTSFLK	10	Unmodified	_HCVDPTSFLK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.294973	1202.57539	0.86957	0.00052374	3.7448	0.0022555	4.6144	0.0027792	602.297090391361	8.9287	0.16862	8.9287	8.8399	9.0085	0	543	25	0.961130371139249	0.0161739645709869	0.961130371139249	389.380959273772	0	6.55252817830103						243	20	2	NaN	NaN	NaN	0.0054641	1	9535	69.915	55.92	1	58559			8231	351	6982	7169	8231	8231		
HDAATCFVDAGNAFK	15	Unmodified	_HDAATCFVDAGNAFK_			0	0	0	P54920	P54920	P54920	NAPA	Alpha-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.364647	1622.71474	1.6537	0.0013434	1.7149	0.0013931	3.3687	0.0027366	812.365858922069	9.4519	0.14189	9.4519	9.381	9.5228	0	390	34	1.06389100039157	0.0220906848842135	1.06389100039157	429.743800777123	0	8.92322134543639						321	17	4	NaN	NaN	NaN	2.6191E-06	1	22257	106.11	99.365	1	82534			8232	1260	6983	7170	8232	8232		
HDADGQATLLNLLLR	15	Unmodified	_HDADGQATLLNLLLR_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.637166	1648.88967	-0.1983	-0.00010919	-0.68961	-0.00037973	-0.88791	-0.00048892	550.636724777671	17.841	0.15956	17.841	17.787	17.947	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	547.905344564778	0	13.5281122359316						395	19	4	NaN	NaN	NaN	1.4706E-05	1	23004	136.94	132.96	1	214240			8233	191	6984	7171	8233	8233		
HDADGQATLLNLLLR	15	Unmodified	_HDADGQATLLNLLLR_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.452111	1648.88967	1.7541	0.0014479	0.85008	0.0007017	2.6041	0.0021496	825.452818361377	17.832	0.15956	17.832	17.787	17.947	0	306	43	1.12000185836644	0.0279975177592968	1.12000185836644	452.348202604305	0	11.3076837696249						403	19	4	NaN	NaN	NaN	4.0855E-05	1	23005	112.73	105.59	1	134310			8234	191	6984	7171	8234	8234		
HDDPALTLVAGLTSNKPTDK	20	Unmodified	_HDDPALTLVAGLTSNKPTDK_			0	0	1	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.367292	2092.08005	1.0721	0.00074869	1.0764	0.00075175	2.1485	0.0015004	698.368207710796	12.582	0.21281	12.582	12.467	12.68	0	456	37	1.01965166402748	0.0241672134976301	1.01965166402748	616.634298062173	0	14.6151212781508						524	25	3	NaN	NaN	NaN	0.059974	1	33224	26.682	25.503	1	218860			8235	2069	6985	7172	8235	8235		
HDDYLVMLK	9	Unmodified	_HDDYLVMLK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.286617	1132.55868	1.3842	0.00078522	0.097703	5.5426E-05	1.4819	0.00084065	567.286789579592	9.9218	0.13292	9.9218	9.8776	10.01	0	537	31	0.965173861991602	0.0202174565849151	0.965173861991602	391.293219002188	0	8.19640271942762						277	16	4	NaN	NaN	NaN	7.387E-06	1	7602	113.7	78.767	1	85172			8236	3324	6986	7173	8236	8236		
HDELADSLPCAEGEFIFLR	19	Unmodified	_HDELADSLPCAEGEFIFLR_			0	0	0	Q9H0D6	Q9H0D6	Q9H0D6	XRN2	5-3 exoribonuclease 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.352766	2218.03647	-1.225	-0.00090692	-0.50477	-0.0003737	-1.7298	-0.0012806	740.686808456306	17.317	0.062059	17.317	17.291	17.353	0	639	28	0.896281965493857	0.0182778248645526	0.896281965493857	541.823657613459	0	11.0493776541329						127	8	3	NaN	NaN	NaN	0.0015143	1	34873	53.051	47.663	1	20424			8237	2843	6987	7174	8237	8237		
HDELLAEHIK	10	Unmodified	_HDELLAEHIK_			0	0	0	Q68E01	Q68E01	Q68E01	INTS3	Integrator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	402.215539	1203.62479	-1.4369	-0.00057794	0.27443	0.00011038	-1.1625	-0.00046756	402.215321936802	4.7691	0.19507	4.7691	4.7337	4.9287	0	840	28	0.759569036796863	0.0184540131906292	0.759569036796863	461.575264189132	0	11.2141432854278						155	23	3	NaN	NaN	NaN	0.048726	1	9575	25.254	17.607	1	29534			8238	2024	6988	7175	8238	8238		
HDFVDLIIK	9	Unmodified	_HDFVDLIIK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.310949	1098.60735	0.24978	0.00013746	-0.25046	-0.00013783	-0.00068746	-3.7832E-07	550.310874636927	13.309	0.088717	13.309	13.274	13.363	0	588	25	0.93076847747433	0.0162098367648951	0.93076847747433	377.485071984384	0	6.57410682262849						139	11	2	NaN	NaN	NaN	0.0039815	1	6677	69.716	56.888	1	39195			8239	1962	6989	7176	8239	8239		
HDGITVAVHK	10	Unmodified	_HDGITVAVHK_			0	0	0	O43504	O43504	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.533091	1075.57744	-0.41488	-0.00014916	0.41804	0.0001503	0.0031582	1.1355E-06	359.533381202438	2.8449	0.12413	2.8449	2.8272	2.9513	0	906	22	0.714399420407021	0.0143932116988817	0.714399420407021	434.710852634482	0	8.75824524914191						106	15	2	NaN	NaN	NaN	0.022403	1	6107	47.349	35.282	1	20073			8240	207	6990	7177	8240	8240		
HDIAFVEFDNEVQAGAAR	18	Unmodified	_HDIAFVEFDNEVQAGAAR_			0	0	0	P09012	P09012	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.976678	1987.9388	1.8918	0.0018823	-2.2741	-0.0022626	-0.38226	-0.00038034	995.476750470128	12.281	0.24828	12.281	12.227	12.476	0	198	49	1.1918274123006	0.0318610781524282	1.1918274123006	480.672533403777	0	12.849801065526						719	29	4	NaN	NaN	NaN	0.025068	1	31407	38.14	25.457	1	151170			8241	595	6991	7178	8241	8241		
HDIAFVEFDNEVQAGAAR	18	Unmodified	_HDIAFVEFDNEVQAGAAR_			0	0	0	P09012	P09012	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.653544	1987.9388	0.62121	0.00041227	1.1608	0.00077036	1.782	0.0011826	664.323323140761	12.281	0.16849	12.281	12.245	12.414	0	555	52	0.953040030838688	0.0344006212312528	0.953040030838688	576.549769370444	0	20.8109518963488						495	20	4	NaN	NaN	NaN	2.4164E-10	1	31408	152.23	146.2	1	104900			8242	595	6991	7178	8242	8242		
HDIAFVEFENDGQAGAAR	18	Unmodified	_HDIAFVEFENDGQAGAAR_			0	0	0	P08579	P08579	P08579	SNRPB2	U2 small nuclear ribonucleoprotein B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.637894	1945.89185	1.2085	0.00078508	1.9569	0.0012713	3.1654	0.0020564	649.973491538893	10.569	0.19508	10.569	10.525	10.72	0	579	40	0.936845902828289	0.0263391634913087	0.936845902828289	566.837810916962	0	15.9364883058403						298	23	3	NaN	NaN	NaN	0.034466	1	30638	68.108	66.52	1	54956			8243	585	6992	7179	8243	8243		
HDLGHFMLR	9	Unmodified	_HDLGHFMLR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	375.858921	1124.55493	-0.82199	-0.00030895	0.34516	0.00012973	-0.47683	-0.00017922	375.859227654221	6.9417	0.2749	6.9417	6.8974	7.1723	0	822	31	0.771863999559055	0.0204830439886194	0.771863999559055	469.419661916068	0	12.4570437144918						645	32	5	NaN	NaN	NaN	0.0004966	1	7387	117.18	101.59	1	457030			8244	894	6993	7180	8244	8244		
HDLGHFMLR	9	Unmodified	_HDLGHFMLR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.284743	1124.55493	1.4977	0.00084361	1.5274	0.00086036	3.0251	0.001704	563.285936791187	6.9505	0.1951	6.9505	6.8175	7.0126	0	603	49	0.920633820089869	0.0324376543962731	0.920633820089869	373.268083583605	0	13.1517448395088						370	23	4	NaN	NaN	NaN	0.0010128	1	7390	105.81	75.247	1	155070			8245	894	6993	7180	8245	8245		
HDLPLHPAVVK	11	Unmodified	_HDLPLHPAVVK_			0	0	0	Q9NY93	Q9NY93	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	409.239907	1224.69789	-1.9418	-0.00079465	2.4394	0.00099829	0.49763	0.00020365	409.240904656467	5.4697	0.15073	5.4697	5.3987	5.5494	0	777	28	0.802556497112065	0.0183950017446732	0.802556497112065	487.602916884629	0	11.1761060300134						258	18	3	NaN	NaN	NaN	0.013097	1	10145	42.075	40.104	1	65581			8246	3111	6994	7181	8246	8246		
HDMAAAGFTEALTFALCSQEDIADK	25	Unmodified	_HDMAAAGFTEALTFALCSQEDIADK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	904.747515	2711.22072	-0.24069	-0.00021776	0.029417	2.6615E-05	-0.21127	-0.00019114	905.083180468656	19.348	0.053188	19.348	19.321	19.375	0	513	19	0.981336640919867	0.0121153786694375	0.981336640919867	592.569527448922	0	7.31574050499501						93	7	4	NaN	NaN	NaN	0.00047439	1	37638	62.304	59.536	1	14543			8247	3036	6995	7182	8247	8247		
HDMLAWINESLQLNLTK	17	Unmodified	_HDMLAWINESLQLNLTK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.019059	2025.03535	-1.1658	-0.00078809	0.9165	0.00061957	-0.24927	-0.00016851	676.353808021699	18.993	0.035455	18.993	18.976	19.011	0	684	19	0.86578508874114	0.0122114546668257	0.86578508874114	523.697672717482	0	7.38648710017651						59	5	3	NaN	NaN	NaN	0.001399	1	32064	39.82	32.964	1	8272.9			8248	1863	6996	7183	8248	8248		
HDSEQDNSDNNTIFVQGLGENVTIESVADYFK	32	Unmodified	_HDSEQDNSDNNTIFVQGLGENVTIESVADYFK_			0	0	0	P35637	P35637	P35637	FUS	RNA-binding protein FUS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1195.87992	3584.61793	1.7874	0.0021375	-0.55972	-0.00066936	1.2277	0.0014682	1196.54791805589	19.543	0.053202	19.543	19.525	19.579	0	285	79	1.13399579921816	0.0519453606978588	1.13399579921816	683.899123638341	0	31.3276175121957						460	7	5	NaN	NaN	NaN	5.6226E-07	1	38680	55.524	55.127	1	92712			8249	977	6997	7184	8249	8249		
HDVDALLWQPHSSK	14	Unmodified	_HDVDALLWQPHSSK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.942478	1631.8056	0.50929	0.00027753	0.48514	0.00026438	0.99444	0.00054191	545.277225702046	8.1833	0.16862	8.1833	8.0858	8.2544	0	684	46	0.86578508874114	0.0305180491511973	0.86578508874114	524.55510155712	0	18.4900370542392						321	20	2	NaN	NaN	NaN	0.00084937	1	22546	113.46	105.46	1	166040			8250	2614	6998	7185	8250	8250		
HDVVFLITK	9	Unmodified	_HDVVFLITK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.313492	1070.61243	0.84731	0.00045442	0.10356	5.5541E-05	0.95087	0.00050997	536.314116840068	9.5406	0.23053	9.5406	9.4608	9.6913	0	639	52	0.896281965493857	0.0345295780335751	0.896281965493857	363.616342534326	0	14.0084475167411						732	27	4	NaN	NaN	NaN	1.5197E-08	1	5983	150.17	125.32	1	659810			8251	1503	6999	7186	8251	8251		
HDWHQTGGEVTISVYAK	17	Unmodified	_HDWHQTGGEVTISVYAK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.468489	1926.92242	2.3617	0.0022778	0.24593	0.00023719	2.6076	0.002515	964.970077467878	7.7842	0.035507	7.7842	7.7753	7.8108	0	201	16	1.18983705239708	0.00995179979907634	1.18983705239708	479.97514649481	0	4.01451321155747						26	5	2	NaN	NaN	NaN	0.002197	1	30210	32.61	31.022	1	4140.3			8252	3213	7000	7187	8252	8252		
HDWIINR	7	Unmodified	_HDWIINR_			0	0	0	P53701	P53701	P53701	HCCS	Cytochrome c-type heme lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.251226	952.487899	-0.51362	-0.00024512	-1.728	-0.00082471	-2.2416	-0.0010698	477.250435147731	6.1436	0.17738	6.1436	6.0993	6.2767	0	768	31	0.808687310729125	0.0204317832671826	0.808687310729125	328.595999830652	0	8.30209916976418						241	21	2	NaN	NaN	NaN	0.013533	1	3291	72.355	27.934	1	106010			8253	1244	7001	7188	8253	8253		
HEAFETDFTVHK	12	Unmodified	_HEAFETDFTVHK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.565008	1459.67319	-1.2681	-0.00061829	0.29886	0.00014571	-0.96926	-0.00047258	487.565214352446	6.4008	0.10639	6.4008	6.3565	6.4629	0	789	28	0.794378096728713	0.018407806217335	0.794378096728713	481.768447994311	0	11.1638277399963						228	13	4	NaN	NaN	NaN	1.6355E-05	1	17246	127.94	121.25	1	66299			8254	1703	7002	7189	8254	8254		
HEAFFIR	7	Unmodified	_HEAFFIR_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.24287	918.471186	-0.09865	-4.5403E-05	0.40284	0.0001854	0.30419	0.00014	460.242938343824	6.7023	0.12409	6.7023	6.658	6.7821	0	699	34	0.85560534332665	0.0224016640756647	0.85560534332665	347.843424442788	0	9.10731987133147						216	15	3	NaN	NaN	NaN	0.0048176	1	2670	92.319	59.348	1	51592			8255	1971	7003	7190	8255	8255		
HEALLYTWLAEHK	13	Unmodified	_HEALLYTWLAEHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.615702	1609.82528	-0.14822	-7.9688E-05	-1.22	-0.00065589	-1.3682	-0.00073558	537.615295582065	12.467	0.16847	12.467	12.423	12.591	0	696	28	0.857641857947968	0.0183260879062385	0.857641857947968	519.680999015427	0	11.1045415786323						354	20	4	NaN	NaN	NaN	0.0036321	1	21890	60.547	59.291	1	108440			8256	1737	7004	7191	8256	8256		
HEAMITDLEER	11	Unmodified	_HEAMITDLEER_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.316634	1342.61871	2.153	0.0014475	0.53216	0.00035778	2.6851	0.0018053	672.317410397788	6.9505	0.33696	6.9505	6.8974	7.2343	0	477	49	1.0055473068722	0.0322585904613818	1.0055473068722	406.893107288756	0	13.0533869663631						769	39	5	NaN	NaN	NaN	7.0475E-23	1	13683	195.3	148.86	1	480280			8257	972	7005	7192	8257	8257		
HEAMITDLEER	11	Oxidation (M)	_HEAM(Oxidation (M))ITDLEER_	HEAM(1)ITDLEER	HEAM(57)ITDLEER	0	1	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.314091	1358.61363	1.5447	0.0010509	1.4863	0.0010112	3.031	0.0020621	680.314701633295	5.2302	0.1153	5.2302	5.1947	5.31	-8.8818E-16	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.396906666271	0	8.15964168198042						203	14	3	NaN	NaN	NaN	0.022452	1	14143	57.293	39.823	1	54790			8258	972	7005	7193	8258	8258	348	
HECAEALGAIAR	12	Unmodified	_HECAEALGAIAR_			0	0	0	Q9BU89	Q9BU89	Q9BU89	DOHH	Deoxyhypusine hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.319511	1296.62447	2.0504	0.0013313	2.6166	0.001699	4.6669	0.0030303	649.823396277943	5.5583	0.10641	5.5583	5.5139	5.6203	0	537	37	0.965173861991602	0.0242475250130607	0.965173861991602	390.697171560308	0	9.81526729328601						220	13	3	NaN	NaN	NaN	0.034842	1	12251	14.455	6.8087	1	55080			8259	2742	7006	7194	8259	8259		
HECQANGPEDLNR	13	Unmodified	_HECQANGPEDLNR_			0	0	0	P60981	P60981	P60981	DSTN	Destrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.333878	1538.6532	3.0121	0.0023203	-1.0329	-0.00079566	1.9793	0.0015247	770.332993990652	2.6941	0.18624	2.6941	2.6409	2.8272	0	504	31	0.987393073566096	0.0201867152025123	0.987393073566096	399.027932129639	0	8.15790938724786						206	22	2	NaN	NaN	NaN	0.04996	1	19677	30.349	21.875	1	47640			8260	1317	7007	7195	8260	8260		
HEEEAFTAFTPAPEDSLASVPYPPLLR	27	Unmodified	_HEEEAFTAFTPAPEDSLASVPYPPLLR_			0	0	0	P82930	P82930	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	995.494061	2983.46035	0.98436	0.00097992	-0.33091	-0.00032942	0.65345	0.0006505	995.828956069612	18.444	0.12413	18.444	18.346	18.47	0	429	19	1.03776581230406	0.0120702642695079	1.03776581230406	626.351836458186	0	7.28510430976382						115	15	4	NaN	NaN	NaN	0.054557	1	38194	5.8012	5.7787	1	15741			8261	1476	7008	7196	8261	8261		
HEEIDLVSLEEFYK	14	Unmodified	_HEEIDLVSLEEFYK_			0	0	0	Q13769	Q13769	Q13769	THOC5	THO complex subunit 5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.930342	1749.84613	1.6015	0.0014028	0.83576	0.00073207	2.4373	0.0021349	875.930131335638	15.704	0.13302	15.704	15.677	15.81	0	321	28	1.10999792833052	0.0180120343234753	1.10999792833052	448.092212444992	0	7.27123186867607						200	16	3	NaN	NaN	NaN	0.0030932	1	25881	53.028	46.281	1	50277			8262	1702	7009	7197	8262	8262		
HEEILQNLQK	10	Unmodified	_HEEILQNLQK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.338227	1250.6619	1.5493	0.0009704	-0.6688	-0.00041889	0.88052	0.0005515	626.338088645023	5.913	0.11534	5.913	5.8864	6.0017	0	543	31	0.961130371139249	0.0202230534711471	0.961130371139249	389.211089290579	0	8.18935381363207						167	14	2	NaN	NaN	NaN	5.1813E-05	1	10943	95.311	78.659	1	73342			8263	914	7010	7198	8263	8263		
HEELMLGDPCLK	12	Unmodified	_HEELMLGDPCLK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.344337	1440.67412	2.0111	0.0014507	0.57839	0.00041722	2.5895	0.0018679	721.344288225076	9.177	0.3902	9.177	9.0351	9.4253	0	465	49	1.01360860968299	0.0322363117711004	1.01360860968299	409.870539917058	0	13.0353219026896						980	45	6	NaN	NaN	NaN	0.0007048	1	16687	71.066	65.038	1	442870			8264	565	7011	7199	8264	8264		
HEEQPAPGYDTHGR	14	Unmodified	_HEEQPAPGYDTHGR_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.906204	1592.69678	0.25131	0.00013368	1.4941	0.00079472	1.7454	0.0009284	531.907017026725	2.1621	0.079779	2.1621	2.1355	2.2153	0	729	13	0.835224628594324	0.0081579516581004	0.835224628594324	506.143822729909	0	4.94369621837666						62	10	3	NaN	NaN	NaN	0.0095347	1	21345	38.584	38.584	1	10682			8265	1568	7012	7200	8265	8265		
HEERQDEHGYISR	13	Unmodified	_HEERQDEHGYISR_			0	0	1	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	414.693475	1654.74479	-1.208	-0.00050094	1.816	0.00075308	0.60802	0.00025214	414.694083651025	1.8783	0.17742	1.8783	1.8428	2.0202	0	855	16	0.749315378969369	0.0102579465428215	0.749315378969369	605.245506766237	0	8.28566479208064						107	21	2	NaN	NaN	NaN	0.031804	1	23175	36.952	35.695	1	26111			8266	516	7013	7201	8266	8266		
HEFSVDMTCGGCAEAVSR	18	Unmodified	_HEFSVDMTCGGCAEAVSR_			0	0	0	O00244	O00244	O00244	ATOX1	Copper transport protein ATOX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.91659	2011.81863	2.2523	0.0022679	-0.39639	-0.00039913	1.8559	0.0018688	1006.91725835797	8.0414	0.12425	8.0414	8.0148	8.139	0	237	28	1.16593139812432	0.0179452593666323	1.16593139812432	470.189775189036	0	7.2368558569396						228	15	4	NaN	NaN	NaN	0.03097	1	31829	29.98	29.828	1	38901			8267	66	7014	7202	8267	8267		
HEGALETLLR	10	Unmodified	_HEGALETLLR_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.814387	1137.61422	0.88961	0.00050691	-0.9645	-0.00054959	-0.074885	-4.2671E-05	569.813903790027	9.0528	0.24828	9.0528	8.9908	9.2391	0	648	40	0.890187667287968	0.0264122944165538	0.890187667287968	360.873619750974	0	10.7072931273792						596	29	4	NaN	NaN	NaN	5.461E-10	1	7739	131.22	111.74	1	279880			8268	2370	7015	7203	8268	8268		
HEGLGAFYK	9	Unmodified	_HEGLGAFYK_			0	0	0	Q6NUK1	Q6NUK1	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.258717	1020.50288	0.46853	0.00023954	3.887	0.0019873	4.3555	0.0022268	511.259274117252	5.8775	0.35474	5.8775	5.7357	6.0904	0	672	46	0.873923798053065	0.0305138129080004	0.873923798053065	354.766790245848	0	12.3869924215936						559	38	5	NaN	NaN	NaN	9.4693E-05	1	4747	117.39	61.373	1	217700			8269	2045	7016	7204	8269	8269		
HEHQVMLMR	9	Unmodified	_HEHQVMLMR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	394.195316	1179.56412	-1.1721	-0.00046203	2.0846	0.00082174	0.91252	0.00035971	394.196304123557	3.3947	0.2218	3.3947	3.3592	3.581	0	804	22	0.78414869089473	0.0143271514943355	0.78414869089473	476.621803006202	0	8.70833919187135						326	26	4	NaN	NaN	NaN	0.00053996	1	8865	93.561	80.965	1	93173			8270	1824	7017	7205	8270	8270		
HEHQVMLMR	9	Unmodified	_HEHQVMLMR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.789335	1179.56412	1.76	0.0010398	0.83736	0.0004947	2.5974	0.0015345	590.789399640109	3.3947	0.070915	3.3947	3.3592	3.4301	0	597	19	0.924688525662974	0.0121624316558541	0.924688525662974	374.700249910101	0	4.92843379633763						101	9	3	NaN	NaN	NaN	0.0056914	1	8866	60.589	49.229	1	17226			8271	1824	7017	7205	8271	8271		
HEIEGTGLPQAQLLWR	16	Unmodified	_HEIEGTGLPQAQLLWR_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.663604	1846.96898	-0.73445	-0.00045291	-0.57244	-0.000353	-1.3069	-0.00080591	616.997643260434	13.167	0.12415	13.167	13.114	13.238	0	723	64	0.839303037468863	0.0428024921166378	0.839303037468863	508.011946255194	0	25.9074212221619						478	15	4	NaN	NaN	NaN	0.00014749	1	28419	74.849	65.692	1	112180			8272	2633	7018	7206	8272	8272		
HEIEGTGLPQAQLLWR	16	Unmodified	_HEIEGTGLPQAQLLWR_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.663604	1846.96898	-0.13331	-8.2205E-05	-0.78202	-0.00048224	-0.91533	-0.00056445	616.996988267593	13.185	0.070958	13.185	13.15	13.221	0	636	19	0.898312834727904	0.0121843709142423	0.898312834727904	543.729299021405	0	7.37493576858935						98	9	3	NaN	NaN	NaN	0.028425	1	28420	44.598	43.716	1	17388			8273	2633	7018	7206	8273	8273		
HEIEGTGLPQAQLLWR	16	Unmodified	_HEIEGTGLPQAQLLWR_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.491767	1846.96898	1.9131	0.0017687	-0.30902	-0.00028569	1.6041	0.001483	924.48828225507	13.203	0.25716	13.203	13.052	13.309	0	264	43	1.14797626962532	0.0279398051055391	1.14797626962532	463.231992363175	0	11.2742849549511						557	30	5	NaN	NaN	NaN	0.0043725	1	28421	55.578	52.493	1	154480			8274	2633	7018	7206	8274	8274		
HEILLSQSVR	10	Unmodified	_HEILLSQSVR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.335487	1180.65642	2.0765	0.0012279	0.076495	4.5234E-05	2.153	0.0012732	591.33551404101	5.6381	0.11533	5.6381	5.6026	5.7179	0	561	37	0.948993180460448	0.0242844683109597	0.948993180460448	384.544819310588	0	9.84039366242945						247	14	4	NaN	NaN	NaN	5.2448E-10	1	8904	115.86	77.539	1	79111			8275	1259	7019	7207	8275	8275		
HEILQWVLQTDSQQ	14	Unmodified	_HEILQWVLQTDSQQ_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.933751	1723.85295	2.6183	0.0022595	0.1497	0.00012918	2.768	0.0023886	863.433750946806	15.579	0.21281	15.579	15.464	15.677	0	342	37	1.09598084995137	0.0240375557134762	1.09598084995137	442.486131431013	0	9.70480920098697						404	25	4	NaN	NaN	NaN	8.9539E-08	1	25164	119.52	108.17	1	75362			8276	2474	7020	7208	8276	8276		
HEILSRDPLLLAIIPK	16	Unmodified	_HEILSRDPLLLAIIPK_			0	0	1	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.040011	1827.0982	-0.085495	-5.2156E-05	-1.0753	-0.00065599	-1.1608	-0.00070815	610.373628474772	15.473	0.12427	15.473	15.411	15.535	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	546.231499294673	0	9.83131699446039						169	15	3	NaN	NaN	NaN	0.036035	1	27907	29.131	26.584	1	32953			8277	2947	7021	7209	8277	8277		
HELFAGIK	8	Unmodified	_HELFAGIK_			0	0	0	O95363	O95363	O95363	FARS2	Phenylalanine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.758352	913.502152	-0.73612	-0.00033696	-0.72911	-0.00033376	-1.4652	-0.00067072	457.757658552679	6.6313	0.097549	6.6313	6.587	6.6845	0	732	28	0.833184998970724	0.0183566683857203	0.833184998970724	338.755663918537	0	7.46343896495858						140	12	2	NaN	NaN	NaN	0.06457	1	2568	46.835	34.283	1	32521			8278	426	7022	7210	8278	8278		
HELIEFR	7	Unmodified	_HELIEFR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.253434	942.492316	0.52491	0.00024789	1.2196	0.00057594	1.7445	0.00082383	472.254132916857	7.0836	0.35478	7.0836	7.0303	7.3851	0	663	76	0.880024865079826	0.0507999489350157	0.880024865079826	357.63670110791	0	20.6447872946423						833	41	5	NaN	NaN	NaN	0.00021285	1	3104	134.85	77.961	1	523540			8279	1503	7023	7211	8279	8279		
HELLPSVNDITAVGPAHFYATNDHYFSDPFLK	32	Unmodified	_HELLPSVNDITAVGPAHFYATNDHYFSDPFLK_			0	0	0	Q15165	Q15165	Q15165	PON2	Serum paraoxonase/arylesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	904.694035	3614.74703	1.1316	0.0010237	2.6101	0.0023614	3.7417	0.0033851	905.449039456259	17.424	0.31923	17.424	17.229	17.548	0	300	49	1.12400150285141	0.0320059751751898	1.12400150285141	903.798775288521	0	25.7356961639894						570	37	4	NaN	NaN	NaN	0.00019374	1	38689	49.654	48.183	1	103680			8280	1819	7024	7212	8280	8280		
HELLQPFNVLYEK	13	Unmodified	_HELLQPFNVLYEK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.435398	1628.85624	2.9886	0.002437	-0.34042	-0.00027759	2.6482	0.0021594	815.435147416252	13.912	0.28374	13.912	13.85	14.134	0	348	88	1.09197348738011	0.0580868068624991	1.09197348738011	441.073256728014	0	23.4625999366001						1600	33	6	NaN	NaN	NaN	4.1472E-17	1	22446	210.4	182.07	1	1468600			8281	3319	7025	7213	8281	8281		
HELQANCYEEVK	12	Unmodified	_HELQANCYEEVK_			0	0	0	P23528	P23528	P23528	CFL1	Cofilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.345923	1518.67729	3.6342	0.0027633	-1.315	-0.00099984	2.3192	0.0017634	760.345187905537	4.3613	0.39015	4.3613	4.2371	4.6273	0	429	169	1.03776581230406	0.112905454752576	1.03776581230406	419.433886648607	0	45.6330061650037						1790	45	6	NaN	NaN	NaN	1.5266E-23	1	19080	244.44	210.72	1	2308700			8282	823	7026	7214	8282	8282		
HELTEISNVDVETQSGK	17	Unmodified	_HELTEISNVDVETQSGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.460527	1884.9065	2.4582	0.0023192	-1.6409	-0.0015481	0.81732	0.00077111	943.458559549149	7.4915	0.1596	7.4915	7.456	7.6156	0	264	34	1.14797626962532	0.021963270168132	1.14797626962532	463.162491447743	0	8.86130070853471						418	19	4	NaN	NaN	NaN	1.4703E-05	1	29260	80.815	78.973	1	107060			8283	1584	7027	7215	8283	8283		
HEMLPASLIQAQR	13	Unmodified	_HEMLPASLIQAQR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.398293	1492.78203	1.8286	0.0013667	-3.6123	-0.0026998	-1.7837	-0.0013331	747.394953057016	9.7622	0.24827	9.7622	9.6824	9.9307	0	441	31	1.02971785871157	0.0201310011285361	1.02971785871157	416.246354422443	0	8.13762309717731						283	29	3	NaN	NaN	NaN	0.061507	1	18332	36.514	35.14	1	84603			8284	1205	7028	7216	8284	8284		
HEMLPEFYK	9	Unmodified	_HEMLPEFYK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.286617	1192.55868	1.1911	0.0007114	2.3313	0.0013925	3.5224	0.0021039	597.288006432264	8.7866	0.17745	8.7866	8.7156	8.8931	0	534	64	0.967195187796614	0.0424772479344968	0.967195187796614	391.875327910188	0	17.2103683652256						754	21	4	NaN	NaN	NaN	4.7604E-05	1	9223	114.64	86.902	1	222290			8285	2175	7029	7217	8285	8285		
HENVIGLLDVFTPAR	15	Unmodified	_HENVIGLLDVFTPAR_			0	0	0	Q16539	Q16539	Q16539	MAPK14	Mitogen-activated protein kinase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.973778	1679.8995	-1.0423	-0.00058471	-1.7105	-0.00095955	-2.7528	-0.0015443	561.306597038246	17.149	0.15072	17.149	17.06	17.211	0	675	25	0.871889544407995	0.0162751600009597	0.871889544407995	528.126454717473	0	9.85829295281042						253	18	3	NaN	NaN	NaN	2.826E-06	1	23919	77.157	72.911	1	55327			8286	1886	7030	7218	8286	8286		
HENVIGLLDVFTPAR	15	Unmodified	_HENVIGLLDVFTPAR_			0	0	0	Q16539	Q16539	Q16539	MAPK14	Mitogen-activated protein kinase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.973778	1679.8995	-0.64417	-0.00036136	0.33777	0.00018948	-0.3064	-0.00017188	561.308418383066	17.14	0.15959	17.14	17.051	17.211	0	639	22	0.896281965493857	0.014218057439808	0.896281965493857	542.90157734089	0	8.6122516216667						203	19	3	NaN	NaN	NaN	0.0079875	1	23920	47.57	42.742	1	41996			8287	1886	7030	7218	8287	8287		
HENYDEALR	9	Unmodified	_HENYDEALR_			0	0	0	Q9HCS7	Q9HCS7	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.762352	1145.51015	1.5518	0.00089035	5.4113	0.0031048	6.9631	0.0039951	573.766375082347	3.4301	0.11536	3.4301	3.4035	3.5189	0	612	28	0.914549654013882	0.0182550299424538	0.914549654013882	370.719106293877	0	7.39980421613257						155	14	3	NaN	NaN	NaN	0.054081	1	7935	33.426	25.243	1	30748			8288	2966	7031	7219	8288	8288		
HEPLVLFCESCDTLTCR	17	Unmodified	_HEPLVLFCESCDTLTCR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.988553	2135.94383	0.23318	0.00016626	0.4355	0.00031051	0.66868	0.00047676	713.323207289795	12.529	0.14187	12.529	12.467	12.609	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	545.636640065978	0	13.5042766447712						426	17	5	NaN	NaN	NaN	0.00019558	1	33822	47.915	46.82	1	92437			8289	1648	7032	7220	8289	8289		
HEPLVLFCESCDTLTCR	17	Unmodified	_HEPLVLFCESCDTLTCR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.988553	2135.94383	1.0056	0.00071696	0.052571	3.7483E-05	1.0581	0.00075445	713.323169414509	12.538	0.14186	12.538	12.476	12.618	0	528	85	0.971237000454584	0.0566089247846514	0.971237000454584	587.27606791959	0	34.2296131028014						708	17	3	NaN	NaN	NaN	0.00019558	1	33823	54.309	54.309	1	141390			8290	1648	7032	7220	8290	8290		
HEPLVLFCESCDTLTCR	17	Unmodified	_HEPLVLFCESCDTLTCR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.97919	2135.94383	1.3422	0.0014348	1.4559	0.0015563	2.7981	0.0029912	1069.48193912013	12.591	0.17732	12.591	12.502	12.68	0	168	49	1.21171599086077	0.0318042675507773	1.21171599086077	488.458850467585	0	12.8207237380605						370	21	3	NaN	NaN	NaN	0.0090437	1	33824	22.395	16.19	1	68701			8291	1648	7032	7220	8291	8291		
HEQEYMEVR	9	Unmodified	_HEQEYMEVR_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.771862	1219.52917	2.3993	0.0014654	-0.42925	-0.00026217	1.97	0.0012032	610.771619832617	3.6785	0.30146	3.6785	3.6164	3.9179	0	591	55	0.928742107665821	0.0364822520341863	0.928742107665821	376.200234121592	0	14.7776564056491						673	35	4	NaN	NaN	NaN	0.00012486	1	10000	92.732	84.549	1	262800			8292	1832	7033	7221	8292	8292		
HEQGLSTALSVEK	13	Unmodified	_HEQGLSTALSVEK_			0	0	0	Q96I25	Q96I25	Q96I25	RBM17	Splicing factor 45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.864805	1397.71506	2.2878	0.0016012	-1.8742	-0.0013117	0.41365	0.0002895	699.863484276879	6.0993	0.21282	6.0993	6.0195	6.2323	0	480	40	1.00353128488872	0.0262119132032216	1.00353128488872	405.914200187056	0	10.6023478724314						458	25	4	NaN	NaN	NaN	1.708E-05	1	15377	100.07	91.094	1	155390			8293	2555	7034	7222	8293	8293		
HEQILVLDPPTDLK	14	Unmodified	_HEQILVLDPPTDLK_			0	0	0	Q9P0L0	Q9P0L0	Q9P0L0	VAPA	Vesicle-associated membrane protein-associated protein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.445963	1616.87737	2.2431	0.0018157	-0.073491	-5.9487E-05	2.1696	0.0017562	809.445944817439	12.05	0.38135	12.05	11.793	12.174	0	342	61	1.09598084995137	0.0400791660081454	1.09598084995137	442.719578873734	0	16.1899101590361						1466	44	4	NaN	NaN	NaN	0.00034049	1	22115	68.108	57.136	1	384590			8294	3146	7035	7223	8294	8294		
HEQNIDCGGGYVK	13	Unmodified	_HEQNIDCGGGYVK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.83044	1475.64633	2.7772	0.0020519	-0.67043	-0.00049533	2.1068	0.0015566	738.830350604019	3.4923	0.47898	3.4923	3.4124	3.8914	0	489	151	0.997481546940468	0.101073585379579	0.997481546940468	403.258355739562	0	40.8616760619673						2558	55	6	NaN	NaN	NaN	2.1516E-12	1	17753	205.09	186.75	1	1885900			8295	868	7036	7224	8295	8295		
HEQVENCLLTSPFEDIFK	18	Unmodified	_HEQVENCLLTSPFEDIFK_			0	0	0	Q14181	Q14181	Q14181	POLA2	DNA polymerase alpha subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.021016	2205.04122	-0.61234	-0.0004507	0.23408	0.00017229	-0.37826	-0.00027841	736.355384761453	17.566	0.070911	17.566	17.539	17.61	0	618	22	0.910492137470517	0.0142042621835186	0.910492137470517	550.434214079783	0	8.58712730160323						155	9	4	NaN	NaN	NaN	0.034804	1	34736	26.682	26.572	1	29480			8296	1734	7037	7225	8296	8296		
HESQMDSVVK	10	Unmodified	_HESQMDSVVK_			0	0	0	Q00765	Q00765	Q00765	REEP5	Receptor expression-enhancing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.274238	1158.53392	1.2748	0.00073973	1.1902	0.00069062	2.465	0.0014304	580.274361965866	2.8272	0.33694	2.8272	2.7917	3.1286	0	648	43	0.890187667287968	0.0284617756829997	0.890187667287968	360.795569964014	0	11.5356378852347						512	39	3	NaN	NaN	NaN	3.5353E-05	1	8311	83.438	62.779	1	142190			8297	1507	7038	7226	8297	8297		
HETLTSLNLEK	11	Unmodified	_HETLTSLNLEK_			0	0	0	Q96A26	Q96A26	Q96A26	FAM162A	Protein FAM162A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.843342	1283.67213	2.1498	0.001382	-0.51891	-0.00033358	1.6309	0.0010484	642.843388885581	6.8619	0.24823	6.8619	6.7998	7.0481	-8.8818E-16	531	52	0.969216233931596	0.0343482903066424	0.969216233931596	392.375242578336	0	13.9054818412906						676	29	5	NaN	NaN	NaN	6.9348E-17	1	11874	179.31	133.82	1	466120			8298	2467	7039	7227	8298	8298		
HETWSGHVISS	11	Unmodified	_HETWSGHVISS_			0	0	0	Q9Y2V2	Q9Y2V2	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.291276	1238.568	2.4492	0.0015192	-0.34634	-0.00021483	2.1029	0.0013044	620.291267081958	5.0263	0.24826	5.0263	4.9819	5.2302	0	591	28	0.928742107665821	0.0182373300269247	0.928742107665821	376.135511935898	0	7.38601965971111						442	29	3	NaN	NaN	NaN	1.0094E-07	1	10564	167.04	157.65	1	163830			8299	3354	7040	7228	8299	8299		
HEVININLK	9	Unmodified	_HEVININLK_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.314023	1078.61349	1.4851	0.00080241	0.76395	0.00041277	2.249	0.0012152	540.314586366643	7.394	0.29258	7.394	7.3496	7.6422	0	621	49	0.908462957275599	0.0324691438304571	0.908462957275599	368.523367789504	0	13.1713000929897						696	34	5	NaN	NaN	NaN	2.4775E-13	1	6188	230.54	178.68	1	541690			8300	1464	7041	7229	8300	8300		
HEVLLISAEQDK	12	Unmodified	_HEVLLISAEQDK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.369724	1380.72489	1.5075	0.0010422	-0.1969	-0.00013613	1.3106	0.00090611	691.369449424539	7.0037	0.17744	7.0037	6.9683	7.1457	0	459	43	1.01763759082241	0.0282028744341156	1.01763759082241	411.669609537739	0	11.4090383559351						416	21	4	NaN	NaN	NaN	1.6001E-07	1	14858	101.48	77.646	1	111250			8301	1498	7042	7230	8301	8301		
HFADLLPGFLQAVNDSCYQNDDSVLK	26	Unmodified	_HFADLLPGFLQAVNDSCYQNDDSVLK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	989.47115	2965.39162	0.75421	0.00074627	0.58232	0.00057619	1.3365	0.0013225	989.806252128669	19.259	0.097544	19.259	19.224	19.321	0	408	46	1.0518390438467	0.03014029110692	1.0518390438467	634.863799992086	0	18.1919276118787						432	12	6	NaN	NaN	NaN	2.3724E-06	1	38166	68.13	67.689	1	117930			8302	74	7043	7231	8302	8302		
HFCPNVPIILVGNK	14	Unmodified	_HFCPNVPIILVGNK_			0	0	0	P61586;P08134	P61586	P61586	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.629066	1606.86537	-0.068163	-3.6578E-05	-1.2652	-0.00067892	-1.3333	-0.0007155	536.628712067609	12.635	0.20396	12.635	12.564	12.768	0	702	34	0.853568545818287	0.0224078882408908	0.853568545818287	517.220926714777	0	13.5780878740838						632	24	5	NaN	NaN	NaN	0.00089126	1	21833	98.009	90.452	1	284730			8303	574	7044	7232	8303	8303		
HFCPNVPIILVGNK	14	Unmodified	_HFCPNVPIILVGNK_			0	0	0	P61586;P08134	P61586	P61586	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.43996	1606.86537	2.1861	0.0017586	-0.16049	-0.00012911	2.0256	0.0016295	804.440037210049	12.635	0.20396	12.635	12.564	12.768	0	390	70	1.06389100039157	0.0461514355558554	1.06389100039157	429.779684150723	0	18.643779662576						1312	24	5	NaN	NaN	NaN	2.0375E-11	1	21834	167.06	159.5	1	820720			8304	574	7044	7232	8304	8304		
HFDETVNR	8	Unmodified	_HFDETVNR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.241055	1016.46756	0.32606	0.00016604	2.4879	0.0012669	2.8139	0.001433	509.241882843096	2.5345	0.15963	2.5345	2.499	2.6587	0	732	28	0.833184998970724	0.0183592202134729	0.833184998970724	338.246868072767	0	7.45326517536546						213	19	2	NaN	NaN	NaN	0.0033158	1	4657	97.033	86.205	1	70973			8305	518	7045	7233	8305	8305		
HFDLNLR	7	Unmodified	_HFDLNLR_			0	0	0	O15213	O15213	O15213	WDR46	WD repeat-containing protein 46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.745776	913.477	-0.56067	-0.00025664	0.75107	0.0003438	0.19039	8.7152E-05	457.746188790155	7.5713	0.11528	7.5713	7.5358	7.6511	0	687	31	0.863749705078866	0.0203552522347787	0.863749705078866	351.182772220221	0	8.27602471759883						207	14	3	NaN	NaN	NaN	0.0023365	1	2562	126.2	67.517	1	54540			8306	155	7046	7234	8306	8306		
HFDSQVIIYGK	11	Unmodified	_HFDSQVIIYGK_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.843145	1305.67174	2.3262	0.001521	-1.6812	-0.0010992	0.64505	0.00042176	653.841423184778	7.7398	0.14185	7.7398	7.6956	7.8374	8.8818E-16	498	34	0.991429299781895	0.0221946439688537	0.991429299781895	401.295933261676	0	8.98361624661601						301	17	4	NaN	NaN	NaN	0.00072759	1	12527	74.849	70.646	1	99995			8307	3043	7047	7235	8307	8307		
HFEATDILVSK	11	Unmodified	_HFEATDILVSK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.335153	1258.65575	1.2296	0.00077503	-0.34169	-0.00021538	0.88787	0.00055966	630.335366665271	9.2479	0.28378	9.2479	9.1681	9.4519	0	543	34	0.961130371139249	0.0222438199941358	0.961130371139249	389.184095165891	0	9.0070413103162						473	33	3	NaN	NaN	NaN	0.00029666	1	11175	94.804	73.529	1	308450			8308	288	7048	7236	8308	8308		
HFEELETIMDR	11	Unmodified	_HFEELETIMDR_			0	0	0	Q92922;Q8TAQ2	Q92922;Q8TAQ2	Q8TAQ2	SMARCC1;SMARCC2	SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.332284	1418.65001	1.4512	0.0010308	1.7777	0.0012627	3.2288	0.0022936	710.333594139124	11.438	0.19508	11.438	11.367	11.562	0	480	31	1.00353128488872	0.0201616152840689	1.00353128488872	405.855500095554	0	8.15390867934656						348	23	4	NaN	NaN	NaN	0.00041218	1	16046	101.82	85.938	1	74361			8309	2333;2445	7049	7237	8309	8309		
HFESLEEELK	10	Unmodified	_HFESLEEELK_			0	0	0	Q86V48	Q86V48	Q86V48	LUZP1	Leucine zipper protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.808968	1259.60338	1.5349	0.0009682	3.7421	0.0023605	5.2769	0.0033287	630.811766705582	8.3164	0.15972	8.3164	8.2188	8.3785	0	522	22	0.975277694896658	0.014139497057216	0.975277694896658	394.909434809132	0	5.72536501200534						128	19	2	NaN	NaN	NaN	3.857E-05	1	11194	93.467	78.705	1	41175			8310	2171	7050	7238	8310	8310		
HFESQSDDPHFHEK	14	Unmodified	_HFESQSDDPHFHEK_			0	0	0	P55210	P55210	P55210	CASP7	Caspase-7;Caspase-7 subunit p20;Caspase-7 subunit p11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.58513	1738.73356	1.0568	0.00061354	1.6084	0.00093379	2.6651	0.0015473	580.585693545619	2.6676	0.062065	2.6676	2.6498	2.7119	0	687	19	0.863749705078866	0.012214846484207	0.863749705078866	523.051225753502	0	7.39680764970228						85	8	3	NaN	NaN	NaN	0.0029559	1	25556	44.82	44.496	1	14577			8311	1270	7051	7239	8311	8311		
HFFTVTDPR	9	Unmodified	_HFFTVTDPR_			0	0	0	Q9BWM7	Q9BWM7	Q9BWM7	SFXN3	Sideroflexin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.282723	1118.55089	0.86304	0.00048355	1.4962	0.00083829	2.3592	0.0013218	560.784706016829	7.0569	0.15969	7.0569	6.9771	7.1368	0	606	28	0.918606045818476	0.0182474411105494	0.918606045818476	372.470137399007	0	7.39884842753338						320	19	4	NaN	NaN	NaN	0.04921	1	7222	45.489	31.841	1	79422			8312	2781	7052	7240	8312	8312		
HFGLQILEHVVK	12	Unmodified	_HFGLQILEHVVK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.94175	1418.80342	-0.1273	-6.0335E-05	-1.6499	-0.00078197	-1.7772	-0.00084231	473.940958374432	12.893	0.24829	12.893	12.804	13.052	0	753	34	0.81889964927511	0.0224577750816375	0.81889964927511	496.774220416335	0	13.6237006797372						388	29	4	NaN	NaN	NaN	0.009157	1	16075	39.01	35.665	1	144270			8313	2947	7053	7241	8313	8313		
HFHNTLEHLR	10	Unmodified	_HFHNTLEHLR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	326.671815	1302.65815	-1.2632	-0.00041265	1.0371	0.0003388	-0.22608	-7.3853E-05	326.672054977848	3.6431	0.19506	3.6431	3.6164	3.8115	0	912	19	0.710286213408253	0.0123396214770952	0.710286213408253	575.002667488321	0	9.98937489027082						258	23	3	NaN	NaN	NaN	0.032902	1	12431	33.396	28.856	1	54044			8314	2605	7054	7242	8314	8314		
HFHPLFEYFDYESR	14	Unmodified	_HFHPLFEYFDYESR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.621404	1885.84238	0.24556	0.00015461	-1.0526	-0.00066275	-0.80706	-0.00050814	629.954953933128	13.753	0.1862	13.753	13.7	13.886	0	645	34	0.892219381832517	0.0223457630982734	0.892219381832517	539.958165623544	0	13.5233301334704						391	22	4	NaN	NaN	NaN	0.00010343	1	29277	96.957	92.885	1	109170			8315	2605	7055	7243	8315	8315		
HFIEITDDQFDFHTYCMR	18	Unmodified	_HFIEITDDQFDFHTYCMR_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	792.345506	2374.01469	1.9217	0.0015227	-0.33628	-0.00026645	1.5854	0.0012562	792.679445953369	13.859	0.079815	13.859	13.832	13.912	0	438	22	1.03173026378327	0.0140868363075159	1.03173026378327	623.450423765142	0	8.51234510968641						193	10	5	NaN	NaN	NaN	0.00024052	1	36232	41.317	40.222	1	42401			8316	2785	7056	7244	8316	8316		
HFIEQGINVCLCQSYAK	17	Unmodified	_HFIEQGINVCLCQSYAK_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.664398	2065.97137	1.3455	0.00092792	-0.20935	-0.00014438	1.1361	0.00078354	689.999028892988	10.915	0.15075	10.915	10.871	11.021	0	519	22	0.97729762293174	0.014139497057216	0.97729762293174	591.069899500522	0	8.55157211937706						238	18	4	NaN	NaN	NaN	0.0020187	1	32809	41.87	41.718	1	47593			8317	482	7057	7245	8317	8317		
HFILDECDK	9	Unmodified	_HFILDECDK_			0	0	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.771331	1175.52811	1.6358	0.00096313	1.3738	0.00080886	3.0096	0.001772	588.772141463331	6.5781	0.3458	6.5781	6.4717	6.8175	0	603	52	0.920633820089869	0.0344817318374574	0.920633820089869	373.072014748373	0	13.9731659731527						1013	40	5	NaN	NaN	NaN	1.4076E-08	1	8742	190.93	149.9	1	480000			8318	1705	7058	7246	8318	8318		
HFIMQVVCEATQCPDTR	17	Unmodified	_HFIMQVVCEATQCPDTR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.985143	2090.9336	0.85742	0.00059847	-0.016964	-1.184E-05	0.84046	0.00058663	698.319798804042	12.298	0.20396	12.298	12.219	12.423	0	549	76	0.957085760909907	0.0505961740717046	0.957085760909907	578.799665754278	0	30.598144740244						953	24	5	NaN	NaN	NaN	9.5738E-07	1	33194	106.47	100.26	1	228260			8319	1780	7059	7247	8319	8319		
HFIMQVVCEATQCPDTR	17	Unmodified	_HFIMQVVCEATQCPDTR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.47408	2090.9336	2.2298	0.0023335	-0.90533	-0.0009474	1.3245	0.0013861	1046.97519973318	12.29	0.14188	12.29	12.254	12.396	0	198	49	1.1918274123006	0.0318523281569778	1.1918274123006	480.508317735705	0	12.84188336391						637	17	6	NaN	NaN	NaN	0.00016517	1	33195	54.309	53.874	1	181870			8320	1780	7059	7247	8320	8320		
HFLLEEDKPEEPTAHAFVSTLTR	23	Unmodified	_HFLLEEDKPEEPTAHAFVSTLTR_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.785287	2666.33403	1.6514	0.0014694	-0.062647	-5.5743E-05	1.5888	0.0014137	890.119422000469	12.21	0.10644	12.21	12.174	12.281	0	453	76	1.02166545906632	0.0503657802476892	1.02166545906632	616.974633508608	0	30.4154442473681						766	13	5	NaN	NaN	NaN	0.00061497	1	37495	44.853	44.704	1	199160			8321	1127	7060	7248	8321	8321		
HFLLEEDKPEEPTAHAFVSTLTR	23	Unmodified	_HFLLEEDKPEEPTAHAFVSTLTR_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	667.590784	2666.33403	1.0458	0.0006982	0.66947	0.00044693	1.7153	0.0011451	667.84187740676	12.21	0.25719	12.21	12.094	12.352	0	516	52	0.979317271586824	0.0343245429890272	0.979317271586824	788.533041583472	0	27.6376584681738						885	30	6	NaN	NaN	NaN	4.528E-24	1	37496	211.47	203.72	1	532200			8322	1127	7060	7248	8322	8322		
HFLPEMLSK	9	Unmodified	_HFLPEMLSK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.291702	1100.56885	0.58379	0.00032184	1.7966	0.00099048	2.3804	0.0013123	551.29271899351	9.4962	0.14186	9.4962	9.443	9.5849	0	570	49	0.942920803299286	0.0323927488942614	0.942920803299286	382.405150566145	0	13.1370036325624						384	17	3	NaN	NaN	NaN	0.00011463	1	6738	114.64	85.329	1	88390			8323	1457	7061	7249	8323	8323		
HFNLLSSK	8	Unmodified	_HFNLLSSK_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.261259	944.507966	0.83438	0.00039488	0.35013	0.0001657	1.1845	0.00056058	473.261220571275	5.9929	0.32814	5.9929	5.913	6.2411	0	699	34	0.85560534332665	0.0224016640756647	0.85560534332665	347.70209708063	0	9.10361960447784						364	38	2	NaN	NaN	NaN	0.0055066	1	3148	72.038	25.236	1	149970			8324	2748	7062	7250	8324	8324		
HFQAGHVCGDNMDLIDGQPTGSVR	24	Unmodified	_HFQAGHVCGDNMDLIDGQPTGSVR_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	653.549865	2610.17035	1.1083	0.00072431	2.3661	0.0015464	3.4744	0.0022707	653.803111268451	8.7866	0.14199	8.7866	8.7422	8.8842	0	510	25	0.983355730988811	0.0161516048852366	0.983355730988811	791.873041745186	0	13.006504245089						278	17	5	NaN	NaN	NaN	0.0057683	1	37274	38.668	38.113	1	65586			8325	2516	7063	7251	8325	8325		
HFQHLTPIK	9	Unmodified	_HFQHLTPIK_			0	0	0	Q92466	Q92466	Q92466	DDB2	DNA damage-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	374.213581	1119.61891	0.00064804	2.4251E-07	0.010557	3.9505E-06	0.011205	4.193E-06	374.213563969153	3.9356	0.14187	3.9356	3.9002	4.042	0	843	19	0.757518876820989	0.0123018175382856	0.757518876820989	460.720032007325	0	7.48191753817719						111	17	2	NaN	NaN	NaN	0.06062	1	7264	17.395	15.596	1	27910			8326	2403	7064	7252	8326	8326		
HFSGLEEAVYR	11	Unmodified	_HFSGLEEAVYR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.322576	1306.6306	2.689	0.0017595	0.27568	0.00018038	2.9647	0.0019399	654.323155287215	7.7309	0.32817	7.7309	7.6511	7.9793	0	543	55	0.961130371139249	0.0363914316100816	0.961130371139249	389.028988657849	0	14.7298662701714						924	38	4	NaN	NaN	NaN	1.493E-07	1	12552	154.81	138.93	1	881620			8327	1174	7065	7253	8327	8327		
HFSTEDGIFQGQR	13	Unmodified	_HFSTEDGIFQGQR_			0	0	0	Q6RFH5	Q6RFH5	Q6RFH5	WDR74	WD repeat-containing protein 74	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.357679	1520.7008	1.764	0.001343	-1.3634	-0.0010381	0.40056	0.00030497	761.356868542904	7.1634	0.14187	7.1634	7.1014	7.2432	0	456	37	1.01965166402748	0.0241672134976301	1.01965166402748	412.10773709559	0	9.76754711219297						231	17	2	NaN	NaN	NaN	8.0947E-05	1	19153	64.906	60.923	1	67279			8328	2081	7066	7254	8328	8328		
HFSVEGQLEFR	11	Unmodified	_HFSVEGQLEFR_			0	0	0	P08238;Q58FF7;Q58FG1;P07900;Q14568	P08238;P07900	P08238	HSP90AB1;HSP90AB3P;HSP90AA4P;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-alpha A4;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.835851	1347.65715	2.4225	0.0016348	1.2739	0.0008597	3.6965	0.0024945	674.836855800407	9.709	0.60292	9.709	9.5849	10.188	0	483	82	1.00151498427745	0.0544552144211901	1.00151498427745	405.245993465597	0	22.0343757346957						1935	69	6	NaN	NaN	NaN	1.6817E-23	1	13829	191.24	159.29	1	2727500			8329	579;567	7067	7255	8329	8329		
HFTEDIQTR	9	Unmodified	_HFTEDIQTR_			0	0	0	P78362;Q9UPE1;Q96SB4	P78362;Q96SB4	Q96SB4	SRPK2;SRPK3;SRPK1	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal;SRSF protein kinase 3;SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.780544	1145.54654	2.4328	0.0013959	-0.03749	-2.1511E-05	2.3953	0.0013744	573.780352313702	3.7494	0.23051	3.7494	3.7051	3.9356	0	612	46	0.914549654013882	0.0304250551653156	0.914549654013882	370.718990307472	0	12.3330053009497						376	27	2	NaN	NaN	NaN	0.0075663	1	7937	56.378	46.299	1	127000			8330	2621;1460	7068	7256	8330	8330		
HFTEFVPLR	9	Unmodified	_HFTEFVPLR_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.308741	1144.60293	0.77868	0.00044642	1.7388	0.00099689	2.5175	0.0014433	573.309764723315	9.514	0.31921	9.514	9.4253	9.7445	0	597	55	0.924688525662974	0.0364974218210178	0.924688525662974	374.832518972107	0	14.7946256252625						522	37	2	NaN	NaN	NaN	0.00084299	1	7923	109.36	88.082	1	215300			8331	1006	7069	7257	8331	8331		
HFTIDDFEIGRPLGK	15	Unmodified	_HFTIDDFEIGRPLGK_			0	0	1	Q96GD4	Q96GD4	Q96GD4	AURKB	Aurora kinase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.305416	1743.89442	0.64089	0.00037319	-1.7107	-0.00099615	-1.0698	-0.00062295	582.304824931435	12.804	0.11528	12.804	12.76	12.875	0	642	43	0.894250814548268	0.0284262615360348	0.894250814548268	541.508793246235	0	17.2133704889673						329	14	4	NaN	NaN	NaN	3.5752E-08	1	25720	136.06	122.88	1	85999			8332	2540	7070	7258	8332	8332		
HFTILDAPGHK	11	Unmodified	_HFTILDAPGHK_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.555895	1234.64586	-1.3214	-0.00054515	0.37955	0.00015659	-0.94185	-0.00038857	412.556208833292	5.8775	0.33702	5.8775	5.8155	6.1525	0	843	43	0.757518876820989	0.0286962475841472	0.757518876820989	460.198511877592	0	17.4331899029576						747	39	5	NaN	NaN	NaN	1.5183E-05	1	10467	142.04	128.05	1	473780			8333	709;2224	7071	7259	8333	8333		
HFTILDAPGHK	11	Unmodified	_HFTILDAPGHK_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.330205	1234.64586	1.7381	0.0010747	0.37629	0.00023267	2.1143	0.0013074	618.330335584827	5.8687	0.26609	5.8687	5.8243	6.0904	0	534	64	0.967195187796614	0.042471368758535	0.967195187796614	391.722513951677	0	17.2012759688798						702	31	4	NaN	NaN	NaN	0.00038012	1	10470	92.732	67.478	1	263470			8334	709;2224	7071	7259	8334	8334		
HFTVMNYDPDVVLK	14	Unmodified	_HFTVMNYDPDVVLK_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.418891	1676.82323	2.651	0.0022253	-0.076506	-6.422E-05	2.5745	0.0021611	839.418704185491	12.804	0.11526	12.804	12.742	12.857	0	297	52	1.12600091227925	0.0339993293213128	1.12600091227925	454.707982298478	0	13.7297992094003						435	14	4	NaN	NaN	NaN	1.6591E-06	1	23813	114.93	108.91	1	109270			8335	1733	7072	7260	8335	8335		
HFVALSTNTTK	11	Unmodified	_HFVALSTNTTK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.827495	1217.64044	2.6022	0.0015869	-0.48164	-0.00029372	2.1205	0.0012932	609.827487845292	4.4765	0.36351	4.4765	4.4233	4.7869	0	579	46	0.936845902828289	0.0303745102206231	0.936845902828289	379.489379352635	0	12.3038420694009						970	42	5	NaN	NaN	NaN	5.5697E-23	1	9959	195.58	162.15	1	709140			8336	546	7073	7261	8336	8336		
HFVGMLPEK	9	Unmodified	_HFVGMLPEK_			0	0	0	P60981	P60981	P60981	DSTN	Destrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.278595	1056.54264	0.85928	0.0004548	2.0724	0.0010969	2.9317	0.0015517	529.279848667315	6.5072	0.35468	6.5072	6.4363	6.7909	0	663	49	0.880024865079826	0.0325322604149904	0.880024865079826	357.081306913468	0	13.2003793606222						749	41	4	NaN	NaN	NaN	0.0017759	1	5629	67.464	44.411	1	587390			8337	1317	7074	7262	8337	8337		
HFVGYPTNSDFELK	14	Unmodified	_HFVGYPTNSDFELK_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.399012	1652.78347	2.5336	0.0020963	-0.045463	-3.7616E-05	2.4882	0.0020587	827.398571300128	10.25	0.1685	10.25	10.152	10.321	0	327	67	1.10599442759226	0.044081013383825	1.10599442759226	446.682092702998	0	17.8031632126946						710	20	4	NaN	NaN	NaN	0.020411	1	23128	55.578	53.277	1	184640			8338	1778	7075	7263	8338	8338		
HFYWYLTNEGIQYLR	15	Unmodified	_HFYWYLTNEGIQYLR_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.99414	2001.97373	1.2747	0.0012772	-1.6508	-0.0016541	-0.37614	-0.00037689	1002.49392841986	15.828	0.14189	15.828	15.792	15.934	0	198	70	1.1918274123006	0.0457971695675452	1.1918274123006	480.649164622009	0	18.4694285997351						500	17	4	NaN	NaN	NaN	0.06405	1	31668	40.533	36.683	1	130800			8339	1091	7076	7264	8339	8339		
HFYWYLTNEGIQYLR	15	Unmodified	_HFYWYLTNEGIQYLR_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.331854	2001.97373	0.44033	0.00029429	-0.034928	-2.3343E-05	0.4054	0.00027094	668.666214460588	15.828	0.10641	15.828	15.792	15.899	0	534	37	0.967195187796614	0.0242609491796308	0.967195187796614	585.084642957669	0	14.6761573751372						359	13	4	NaN	NaN	NaN	1.1582E-05	1	31669	118.91	108.15	1	98058			8340	1091	7076	7264	8340	8340		
HGAEVIDTPVFELK	14	Unmodified	_HGAEVIDTPVFELK_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.911756	1553.80896	1.6565	0.0012886	0.11901	9.258E-05	1.7755	0.0013812	777.911813181565	12.352	0.17735	12.352	12.281	12.458	0	372	64	1.07593298845566	0.0421556968766068	1.07593298845566	434.771093849644	0	17.0345910383726						560	21	3	NaN	NaN	NaN	0.0065509	1	20180	66.953	58.147	1	246890			8341	664	7077	7265	8341	8341		
HGAGAEISTVHPEQYAK	17	Unmodified	_HGAGAEISTVHPEQYAK_			0	0	0	Q8TBX8	Q8TBX8	Q8TBX8	PIP4K2C	Phosphatidylinositol 5-phosphate 4-kinase type-2 gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.96383	1793.86966	1.6874	0.0010107	0.98949	0.00059267	2.6769	0.0016034	599.298580900471	4.911	0.13298	4.911	4.8312	4.9642	0	570	22	0.942920803299286	0.0141708428887385	0.942920803299286	570.855301826019	0	8.57919431417213						239	16	4	NaN	NaN	NaN	7.9645E-05	1	27073	57.042	35.039	1	64692			8342	2338	7078	7266	8342	8342		
HGDEIITSTTSNYETQTFSSK	21	Unmodified	_HGDEIITSTTSNYETQTFSSK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.695914	2345.06591	1.2711	0.00099486	0.73054	0.00057179	2.0016	0.0015666	783.031089190337	8.8044	0.1152	8.8044	8.769	8.8842	0	576	73	0.938871150116794	0.0486026024446214	0.938871150116794	567.378567307011	0	29.3715223212378						567	14	5	NaN	NaN	NaN	1.8826E-22	1	35999	199.84	189.97	1	155510			8343	2064	7079	7267	8343	8343		
HGDEIYIAPSGVQK	14	Unmodified	_HGDEIYIAPSGVQK_			0	0	0	Q96GX9	Q96GX9	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.385905	1512.75726	1.804	0.0013663	-2.0321	-0.0015391	-0.22817	-0.00017281	757.385776885372	6.3387	0.12415	6.3387	6.2855	6.4096	0	444	37	1.02770517576159	0.0241538670444676	1.02770517576159	415.382362598533	0	9.76261538372302						316	15	4	NaN	NaN	NaN	0.00015709	1	18891	70.195	59.408	1	95928			8344	2547	7080	7268	8344	8344		
HGDLPDIQIK	10	Unmodified	_HGDLPDIQIK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.308938	1134.60332	1.9744	0.0011221	-0.3452	-0.00019618	1.6292	0.00092589	568.308727089248	8.1213	0.24846	8.1213	8.0414	8.2898	0	522	52	0.975277694896658	0.0343530427274077	0.975277694896658	395.380868564219	0	13.9268394452776						738	29	4	NaN	NaN	NaN	2.179E-05	1	7663	131.22	83.876	1	308800			8345	1465	7081	7269	8345	8345		
HGDPGDAAQQEAK	13	Unmodified	_HGDPGDAAQQEAK_			0	0	0	O14737	O14737	O14737	PDCD5	Programmed cell death protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.29983	1322.58511	1.1068	0.00073303	0.21029	0.00013928	1.3171	0.00087231	662.299948655169	1.6655	0.097553	1.6655	1.6389	1.7364	0	588	25	0.93076847747433	0.01621208273842	0.93076847747433	376.692096564241	0	6.56120569637227						74	12	2	NaN	NaN	NaN	2.9199E-07	1	13056	103.76	89.305	1	11427			8346	114	7082	7270	8346	8346		
HGDVITIIDR	10	Unmodified	_HGDVITIIDR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.814387	1137.61422	0.84507	0.00048154	-0.81192	-0.00046264	0.033157	1.8893E-05	569.813871127176	7.8906	0.10638	7.8906	7.8552	7.9615	0	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	366.636685011648	0	7.40657426566742						205	13	3	NaN	NaN	NaN	5.4016E-05	1	7740	97.277	66.685	1	68514			8347	1074	7083	7271	8347	8347		
HGEIDYEAIVK	11	Unmodified	_HGEIDYEAIVK_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.324785	1272.63502	2.0767	0.0013235	0.3196	0.00020369	2.3963	0.0015272	637.324891127011	8.1745	0.1774	8.1745	8.1213	8.2987	0	474	52	1.00756305028564	0.0342771221758933	1.00756305028564	407.937131012603	0	13.8779512367373						599	21	4	NaN	NaN	NaN	1.5001E-11	1	11571	151.22	127.39	1	285670			8348	1390	7084	7272	8348	8348		
HGEPEEDIVGLQAFQER	17	Unmodified	_HGEPEEDIVGLQAFQER_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.981549	1952.92282	0.11265	7.3444E-05	1.372	0.00089455	1.4847	0.000968	652.316534367392	11.926	0.20396	11.926	11.837	12.041	0	558	34	0.951016745717027	0.0222592210224549	0.951016745717027	575.397214599293	0	13.467579654251						499	24	4	NaN	NaN	NaN	0.0010358	1	30764	93.772	88.384	1	128380			8349	352	7085	7273	8349	8349		
HGESAWNLENR	11	Unmodified	_HGESAWNLENR_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.205814	1311.59561	-2.4004	-0.0010519	1.7364	0.00076088	-0.66408	-0.000291	438.206322261735	5.2302	0.14192	5.2302	5.1859	5.3278	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	468.609431752673	0	9.9484336002356						155	17	3	NaN	NaN	NaN	0.0049647	1	12701	72.042	58.047	1	36245			8350	757	7086	7274	8350	8350		
HGESAWNLENR	11	Unmodified	_HGESAWNLENR_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.805082	1311.59561	1.7592	0.0011555	1.4735	0.00096781	3.2327	0.0021233	656.806471140534	5.2213	0.37241	5.2213	5.1681	5.5405	0	570	49	0.942920803299286	0.0323927488942614	0.942920803299286	381.643327431255	0	13.11083224529						1011	43	5	NaN	NaN	NaN	5.2537E-17	1	12702	216.26	177.25	1	816070			8351	757	7086	7274	8351	8351		
HGEVCPAGWK	10	Unmodified	_HGEVCPAGWK_			0	0	0	Q06830;Q13162	Q06830;Q13162	Q06830	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.766383	1139.51821	3.1035	0.0017714	0.048187	2.7504E-05	3.1517	0.0017989	570.766622263565	3.8736	0.53203	3.8736	3.776	4.3081	0	639	73	0.896281965493857	0.0487442756818737	0.896281965493857	363.336916063368	0	19.7600704731752						1893	61	6	NaN	NaN	NaN	4.8198E-10	1	7771	146.03	102.3	1	3267700			8352	1564;1637	7087	7275	8352	8352		
HGFLEEFITPIVK	13	Unmodified	_HGFLEEFITPIVK_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.421759	1528.82897	0.5145	0.00039381	1.1921	0.00091246	1.7066	0.0013063	765.422596188976	16.856	0.097552	16.856	16.803	16.901	0	393	40	1.0618830335572	0.0261071745349262	1.0618830335572	429.155594942763	0	10.5511055980228						329	12	4	NaN	NaN	NaN	2.8726E-05	1	19397	79.311	70.837	1	87506			8353	1534	7088	7276	8353	8353		
HGFSGIPITETGTMGSK	17	Unmodified	_HGFSGIPITETGTMGSK_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.422162	1718.82977	2.4316	0.0020922	-0.71926	-0.00061887	1.7124	0.0014734	860.42271839803	9.3721	0.11526	9.3721	9.3189	9.4342	0	339	34	1.09798411722691	0.022035943167249	1.09798411722691	443.305257990971	0	8.89689506211039						364	14	5	NaN	NaN	NaN	0.00061722	1	25024	54.309	51.638	1	94226			8354	786	7089	7277	8354	8354		
HGGEDYVFSLLTGYCEPPTGVSLR	24	Unmodified	_HGGEDYVFSLLTGYCEPPTGVSLR_			0	0	0	P08574	P08574	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	885.423361	2653.24825	0.78508	0.00069513	0.24331	0.00021543	1.0284	0.00091056	885.757910074707	18.195	0.1064	18.195	18.151	18.257	0	474	85	1.00756305028564	0.0564681753070051	1.00756305028564	608.473878960687	0	34.1014983202735						886	13	4	NaN	NaN	NaN	2.6527E-07	1	37456	96.78	93.713	1	177980			8355	584	7090	7278	8355	8355		
HGGENVAAVLR	11	Unmodified	_HGGENVAAVLR_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.804354	1121.59415	1.303	0.00073204	-0.77215	-0.0004338	0.53087	0.00029824	561.803812109501	4.9287	0.14184	4.9287	4.8844	5.0263	0	621	28	0.908462957275599	0.0182651557513902	0.908462957275599	368.345230176659	0	7.40578682441242						170	17	3	NaN	NaN	NaN	0.0007921	1	7317	87.942	73.947	1	43183			8356	6	7091	7279	8356	8356		
HGGFILDEADVDDEYEDEDQWEDGAEDILEK	31	Unmodified	_HGGFILDEADVDDEYEDEDQWEDGAEDILEK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1199.5043	3595.49106	1.5485	0.0018574	0.58329	0.00069966	2.1318	0.0025571	1200.17311058852	17.716	0.026609	17.716	17.699	17.725	0	309	22	1.11800162319566	0.0140016469913808	1.11800162319566	674.245334586158	0	8.4441247352363						47	4	2	NaN	NaN	NaN	0.028404	1	38682	8.4106	8.111	1	12094			8357	69	7092	7280	8357	8357		
HGGTIPIVPTAEFQDR	16	Unmodified	_HGGTIPIVPTAEFQDR_			0	0	0	P00367	P00367	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.449568	1736.88458	2.7572	0.0023973	-0.72856	-0.00063344	2.0287	0.0017638	869.44950336446	10.764	0.1064	10.764	10.72	10.826	0	333	34	1.10198982404297	0.0220268393331327	1.10198982404297	444.885540799132	0	8.89247987142414						320	13	4	NaN	NaN	NaN	0.035679	1	25522	33.751	31.615	1	67734			8358	472	7093	7281	8358	8358		
HGGTIPIVPTAEFQDR	16	Unmodified	_HGGTIPIVPTAEFQDR_			0	0	0	P00367	P00367	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.968804	1736.88458	1.0176	0.0005902	2.0441	0.0011855	3.0618	0.0017757	580.304686036545	10.764	0.14187	10.764	10.711	10.853	0	567	88	0.944945209309785	0.0587892162904202	0.944945209309785	572.224687690892	0	35.6006259410004						630	17	4	NaN	NaN	NaN	0.0010099	1	25523	86.243	79.496	1	163680			8359	472	7093	7281	8359	8359		
HGGVIHIYVDK	11	Unmodified	_HGGVIHIYVDK_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.33803	1236.66151	2.5678	0.0015903	-2.3211	-0.0014375	0.2467	0.00015279	619.336791315066	5.1327	0.24829	5.1327	5.0617	5.31	0	525	31	0.973257487423603	0.020206269780618	0.973257487423603	394.170705976996	0	8.18356881658525						344	29	4	NaN	NaN	NaN	0.0015227	1	10532	43.272	34.295	1	84677			8360	1753	7094	7282	8360	8360		
HGGVIHIYVDK	11	Unmodified	_HGGVIHIYVDK_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	413.227779	1236.66151	-0.98145	-0.00040556	1.5431	0.00063766	0.56167	0.0002321	413.228491574992	5.1327	0.26604	5.1327	5.0883	5.3544	0	792	31	0.792332785124922	0.0204573895443732	0.792332785124922	481.339560053915	0	12.4277968399194						467	31	4	NaN	NaN	NaN	0.036445	1	10533	36.211	33.612	1	199130			8361	1753	7094	7282	8361	8361		
HGHLCPIDTGLIEK	14	Unmodified	_HGHLCPIDTGLIEK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.60833	1588.80316	0.42435	0.00022517	0.021066	1.1178E-05	0.44542	0.00023634	530.60826188388	7.4294	0.15959	7.4294	7.3762	7.5358	0	687	34	0.863749705078866	0.0223954425033767	0.863749705078866	523.440991292099	0	13.5718629545839						391	19	4	NaN	NaN	NaN	0.0033575	1	21247	48.701	43.55	1	121910			8362	849	7095	7283	8362	8362		
HGHLCPIDTGLIEK	14	Unmodified	_HGHLCPIDTGLIEK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.408857	1588.80316	2.5983	0.0020667	-0.84255	-0.00067017	1.7557	0.0013965	795.408355447869	7.4383	0.097522	7.4383	7.3851	7.4826	0	351	34	1.08996939197032	0.0220450526465417	1.08996939197032	440.357342447461	0	8.90639761910836						224	12	3	NaN	NaN	NaN	0.0016972	1	21249	46.068	26.512	1	50859			8363	849	7095	7283	8363	8363		
HGIPTAQWK	9	Unmodified	_HGIPTAQWK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.279983	1036.54541	1.4728	0.00076479	-1.0101	-0.00052454	0.46264	0.00024024	519.280218953822	4.8312	0.16853	4.8312	4.778	4.9465	0	690	49	0.86171403876517	0.0325774564338044	0.86171403876517	349.738245269449	0	13.2219993361459						407	20	3	NaN	NaN	NaN	0.00017393	1	5154	106.93	87.67	1	254620			8364	801	7096	7284	8364	8364		
HGIVEDWDLMER	12	Unmodified	_HGIVEDWDLMER_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.351008	1498.68746	1.3626	0.0010225	1.1978	0.00089879	2.5605	0.0019213	750.352249024984	12.414	0.18618	12.414	12.361	12.547	0	426	43	1.03977710643793	0.0281600678501546	1.03977710643793	420.297406343344	0	11.3828275373546						555	22	5	NaN	NaN	NaN	0.00038241	1	18490	81.335	75.469	1	228120			8365	1330	7097	7285	8365	8365		
HGLEAISIMDSR	12	Unmodified	_HGLEAISIMDSR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.834994	1327.65543	1.5287	0.0010163	1.9425	0.0012915	3.4712	0.0023078	664.836641425445	9.6381	0.25714	9.6381	9.5672	9.8243	0	489	43	0.997481546940468	0.0282418742669083	0.997481546940468	403.675651140781	0	11.4293412435536						588	30	5	NaN	NaN	NaN	4.5754E-05	1	13214	106	93.407	1	242630			8366	858	7098	7286	8366	8366		
HGLEVIYMIEPIDEYCVQQLK	21	Unmodified	_HGLEVIYMIEPIDEYCVQQLK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.762437	2576.26548	1.8647	0.0016032	-1.0392	-0.00089345	0.82551	0.00070975	860.096194298452	17.681	0.19508	17.681	17.592	17.787	0	513	223	0.981336640919867	0.148990936766466	0.981336640919867	592.727873948119	0	89.9906082222169						2994	23	6	NaN	NaN	NaN	3.6003E-16	1	37143	137.58	131.74	1	963240			8367	567	7099	7287	8367	8367		
HGLEVSEMAVSELPGNPNAVWTVR	24	Unmodified	_HGLEVSEMAVSELPGNPNAVWTVR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	864.76735	2591.28022	1.2643	0.0010933	-0.99368	-0.0008593	0.27059	0.00023399	865.101061237705	15.615	0.097518	15.615	15.588	15.686	0	468	49	1.01159370163332	0.0322541328760771	1.01159370163332	610.984157876004	0	19.4809083740756						373	12	3	NaN	NaN	NaN	1.3681E-06	1	37211	73.345	72.869	1	105030			8368	1841	7100	7288	8368	8368		
HGLLVPNNTTDQELQHIR	18	Unmodified	_HGLLVPNNTTDQELQHIR_			0	0	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.699376	2084.0763	1.4622	0.0010173	0.25341	0.00017629	1.7156	0.0011935	696.033933548636	8.6891	0.21304	8.6891	8.6268	8.8399	0	531	34	0.969216233931596	0.0222315106769172	0.969216233931596	586.148305879234	0	13.4448452927285						593	25	5	NaN	NaN	NaN	3.459E-07	1	33086	132.9	127.81	1	228870			8369	1286	7101	7289	8369	8369		
HGLQPALLVHWAECLQK	17	Unmodified	_HGLQPALLVHWAECLQK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.356005	1999.04619	0.40624	0.00027111	0.83808	0.0005593	1.2443	0.00083041	667.356137920769	15.278	0.088662	15.278	15.242	15.331	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	599.750604185688	0	9.76527371330963						160	11	3	NaN	NaN	NaN	0.020327	1	31625	42.446	41.503	1	39144			8370	1151	7102	7290	8370	8370		
HGLTEADVGITK	12	Unmodified	_HGLTEADVGITK_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.830234	1239.64592	2.1426	0.0013302	-1.9844	-0.001232	0.15816	9.8189E-05	620.830218000549	5.6026	0.17739	5.6026	5.5494	5.7268	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	385.97234627455	0	8.19355031449737						413	21	5	NaN	NaN	NaN	4.1945E-05	1	10612	127.93	84.657	1	151410			8371	2601	7103	7291	8371	8371		
HGLVPFAFVR	10	Unmodified	_HGLVPFAFVR_			0	0	0	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.827101	1141.63965	1.7431	0.00099675	-1.2577	-0.00071921	0.48535	0.00027753	571.826304453689	12.839	0.21283	12.839	12.76	12.972	0	576	55	0.938871150116794	0.0364519408200378	0.938871150116794	380.59337171244	0	14.776646465742						612	25	3	NaN	NaN	NaN	3.5382E-05	1	7843	100.75	91.362	1	175920			8372	1644	7104	7292	8372	8372		
HGPLALVDK	9	Unmodified	_HGPLALVDK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.276909	948.539266	-0.044751	-2.1269E-05	-0.3779	-0.00017961	-0.42265	-0.00020088	475.276720811801	5.5849	0.17741	5.5849	5.5405	5.7179	0	756	34	0.816857749704129	0.0224577750816375	0.816857749704129	331.93556436667	0	9.1258658546646						263	21	4	NaN	NaN	NaN	0.0017759	1	3224	77.072	58.669	1	114420			8373	1558	7105	7293	8373	8373		
HGPVGLLHVDAHTDTTDK	18	Unmodified	_HGPVGLLHVDAHTDTTDK_			0	0	0	Q9BSE5	Q9BSE5	Q9BSE5	AGMAT	Agmatinase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	478.993249	1911.94389	-0.8004	-0.00038339	2.4666	0.0011815	1.6662	0.00079812	479.245953244474	5.5228	0.07095	5.5228	5.4873	5.5583	0	765	28	0.810730346695089	0.0183873254729269	0.810730346695089	654.121931453772	0	14.8354541083233						134	9	3	NaN	NaN	NaN	0.0081416	1	29869	45.654	44.772	1	41033			8374	2723	7106	7294	8374	8374		
HGSYEDAVHSGALND	15	Unmodified	_HGSYEDAVHSGALND_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.562214	1570.66481	0.12574	6.5957E-05	3.9747	0.002085	4.1004	0.0021509	524.563733272684	5.3455	0.12419	5.3455	5.3012	5.4254	0	714	34	0.845418525735192	0.0224203443559257	0.845418525735192	512.383154038426	0	13.5883073365665						339	15	4	NaN	NaN	NaN	0.00012861	1	20670	81.099	80.047	1	155170			8375	747	7107	7295	8375	8375		
HGVDHQVISVTFEK	14	Unmodified	_HGVDHQVISVTFEK_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.412454	1594.81036	2.0404	0.0016291	0.2918	0.00023298	2.3322	0.0018621	798.413154044979	6.9949	0.079785	6.9949	6.9505	7.0303	0	360	22	1.08395544855938	0.014036403514655	1.08395544855938	437.913396751007	0	5.6706473955544						137	10	3	NaN	NaN	NaN	0.057993	1	21432	39.293	34.765	1	30148			8376	1793	7108	7296	8376	8376		
HGVDVEVQGPHEAR	14	Unmodified	_HGVDVEVQGPHEAR_			0	0	0	Q9HCE1	Q9HCE1	Q9HCE1	MOV10	Putative helicase MOV-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.586694	1528.73825	0.36775	0.00018777	2.4032	0.0012271	2.771	0.0014148	510.587771845368	3.6164	0.12413	3.6164	3.581	3.7051	0	714	19	0.845418525735192	0.0122284278950673	0.845418525735192	512.50579058659	0	7.41306218779926						112	15	2	NaN	NaN	NaN	0.064491	1	19381	27.378	26.004	1	29308			8377	2962	7109	7297	8377	8377		
HGVESTLER	9	Unmodified	_HGVESTLER_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.261988	1026.50942	1.1628	0.00059798	-1.0268	-0.00052805	0.13599	6.9934E-05	514.262159457336	2.6498	0.3458	2.6498	2.5878	2.9336	0	723	31	0.839303037468863	0.0203892128493071	0.839303037468863	340.686086509312	0	8.27629690651929						339	40	3	NaN	NaN	NaN	0.043426	1	4889	43.734	30.907	1	85824			8378	1544	7110	7298	8378	8378		
HGVIVAADSR	10	Unmodified	_HGVIVAADSR_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.780348	1023.54614	1.3519	0.00069323	-1.3853	-0.00071038	-0.033438	-1.7146E-05	512.779780879558	2.7296	0.13302	2.7296	2.703	2.836	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	344.836007263612	0	6.61669231369598						170	16	2	NaN	NaN	NaN	0.00043462	1	4836	86.205	68.81	1	47363			8379	875	7111	7299	8379	8379		
HGVSCVSLWPGIVQTELLK	19	Unmodified	_HGVSCVSLWPGIVQTELLK_			0	0	0	Q96LJ7	Q96LJ7	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.382108	2122.1245	-1.1	-0.00077924	-1.2564	-0.00088999	-2.3564	-0.0016692	708.715506064853	17.051	0.062049	17.051	17.016	17.078	0	624	25	0.906433495720521	0.0162390708699242	0.906433495720521	548.114494950695	0	9.81966153100041						149	8	4	NaN	NaN	NaN	0.0082336	1	33649	49.097	47.622	1	26153			8380	2582	7112	7300	8380	8380		
HGYIFSSLAGCLMK	14	Unmodified	_HGYIFSSLAGCLMK_			0	0	0	Q9Y3B2	Q9Y3B2	Q9Y3B2	EXOSC1	Exosome complex component CSL4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.389079	1582.7636	1.6594	0.0013149	3.6262	0.0028734	5.2856	0.0041883	792.392001269988	14.648	0.070946	14.648	14.613	14.684	0	336	22	1.09998710857178	0.0140190090961851	1.09998710857178	444.419225473348	0	5.66399107396802						94	9	3	NaN	NaN	NaN	0.0053894	1	21053	58.889	55.153	1	14598			8381	3378	7113	7301	8381	8381		
HGYIGEFEIIDDHR	14	Unmodified	_HGYIGEFEIIDDHR_			0	0	0	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	425.956135	1699.79543	-1.5446	-0.00065795	-0.045712	-1.9471E-05	-1.5903	-0.00067742	425.956116769848	10.321	0.11525	10.321	10.268	10.383	0	834	28	0.763668499782291	0.0184437299507298	0.763668499782291	616.703534115208	0	14.8943074725804						245	14	3	NaN	NaN	NaN	0.0079162	1	24481	51.872	45.496	1	72491			8382	1371	7114	7302	8382	8382		
HGYIGEFEIIDDHR	14	Unmodified	_HGYIGEFEIIDDHR_			0	0	0	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.904993	1699.79543	1.9936	0.0016964	-0.03694	-3.1433E-05	1.9567	0.001665	850.904892999724	10.321	0.15071	10.321	10.268	10.418	0	306	34	1.12000185836644	0.0220025900053455	1.12000185836644	452.235307124636	0	8.88422458791069						373	18	4	NaN	NaN	NaN	0.0001207	1	24483	81.799	69.217	1	103520			8383	1371	7114	7302	8383	8383		
HGYIGEFEIIDDHR	14	Unmodified	_HGYIGEFEIIDDHR_			0	0	0	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.605754	1699.79543	1.0306	0.00058497	1.2596	0.00071496	2.2902	0.0012999	567.606261686147	10.312	0.26602	10.312	10.259	10.525	0	642	40	0.894250814548268	0.0264049676271125	0.894250814548268	541.619436773945	0	15.9926538075957						741	31	5	NaN	NaN	NaN	3.4626E-08	1	24484	195.4	182.23	1	570140			8384	1371	7114	7302	8384	8384		
HGYIGEFEIIDDHRAGK	17	Unmodified	_HGYIGEFEIIDDHRAGK_			0	0	1	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	489.99452	1955.94897	-1.6431	-0.0008051	-1.0119	-0.00049584	-2.655	-0.0013009	490.243924180495	8.7068	0.079889	8.7068	8.6623	8.7422	0	801	19	0.78619514174348	0.0122778508671118	0.78619514174348	634.223574397889	0	9.90454156915223						147	10	4	NaN	NaN	NaN	0.004528	1	30817	33.751	29.901	1	31787			8385	1371	7115	7303	8385	8385		
HGYNMEQALGMLFWHK	16	Unmodified	_HGYNMEQALGMLFWHK_			0	0	0	Q9UKL0	Q9UKL0	Q9UKL0	RCOR1	REST corepressor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.643158	1960.90764	-0.25483	-0.00016682	1.988	0.0013014	1.7331	0.0011346	655.313447434972	17.184	0.079808	17.184	17.158	17.238	0	567	19	0.944945209309785	0.0121455956002338	0.944945209309785	571.707316781359	0	7.34828411521653						105	10	3	NaN	NaN	NaN	0.036786	1	30937	43.613	42.597	1	18387			8386	3265	7116	7304	8386	8386		
HGYPLIIYDVFPDACK	16	Unmodified	_HGYPLIIYDVFPDACK_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.650195	1906.92876	-0.17471	-0.00011123	-1.3453	-0.0008565	-1.52	-0.00096773	636.649934083558	16.918	0.32811	16.918	16.706	17.034	0	576	37	0.938871150116794	0.0242979231728671	0.938871150116794	568.145298194916	0	14.7035626825347						512	38	2	NaN	NaN	NaN	0.0022052	1	29742	47.361	45.651	1	174910			8387	928	7117	7305	8387	8387		
HHAAYVNNLNVTEEK	15	Unmodified	_HHAAYVNNLNVTEEK_			0	0	0	P04179	P04179	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.929	1737.84345	3.1503	0.0027405	-2.7275	-0.0023727	0.4228	0.0003678	870.42816367596	4.5741	0.088658	4.5741	4.5475	4.6361	0	318	34	1.11199926528787	0.022017741139529	1.11199926528787	448.924509313691	0	8.88876813664092						180	11	3	NaN	NaN	NaN	4.5924E-08	1	25539	102.03	82.472	1	43663			8388	509	7118	7306	8388	8388		
HHCPNTPIILVGTK	14	Unmodified	_HHCPNTPIILVGTK_			0	0	0	P63000	P63000	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.927217	1585.83988	1.999	0.001587	-3.4359	-0.0027279	-1.437	-0.0011408	793.924056043283	6.3121	0.13303	6.3121	6.2323	6.3653	0	411	25	1.04982941439551	0.0160759277723759	1.04982941439551	424.147292141473	0	6.4949230225572						208	16	3	NaN	NaN	NaN	0.040822	1	21147	16.759	13.657	1	45533			8389	1422	7119	7307	8389	8389		
HHCPNTPIILVGTK	14	Unmodified	_HHCPNTPIILVGTK_			0	0	0	P63000	P63000	P63000	RAC1	Ras-related C3 botulinum toxin substrate 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.62057	1585.83988	-1.2105	-0.0006411	1.3317	0.0007053	0.12122	6.4201E-05	529.955815207399	6.3121	0.25717	6.3121	6.2146	6.4717	0	780	55	0.800512323802183	0.036792574000763	0.800512323802183	485.126321367691	0	22.2970284752909						595	30	3	NaN	NaN	NaN	0.018954	1	21149	54.27	51.969	1	189510			8390	1422	7119	7307	8390	8390		
HHGDVMDLQFFDQER	15	Unmodified	_HHGDVMDLQFFDQER_			0	0	0	Q8NFH3	Q8NFH3	Q8NFH3	NUP43	Nucleoporin Nup43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.281053	1872.82133	-1.0134	-0.00063365	-0.49811	-0.00031146	-1.5115	-0.00094511	625.615017120139	12.201	0.070959	12.201	12.165	12.236	0	726	25	0.837263974740672	0.0163136366798808	0.837263974740672	506.725652063223	0	9.87327585269099						156	9	3	NaN	NaN	NaN	0.00013261	1	28995	55.578	49.374	1	35896			8391	2317	7120	7308	8391	8391		
HHIETGGGQLPAK	13	Unmodified	_HHIETGGGQLPAK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	448.905476	1343.6946	-0.24001	-0.00010774	1.2001	0.00053874	0.96011	0.000431	448.906204232914	2.5966	0.07092	2.5966	2.57	2.6409	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	458.54139507916	0	9.95705224439223						105	9	3	NaN	NaN	NaN	0.0002608	1	13715	83.358	70.762	1	21006			8392	2420	7121	7309	8392	8392		
HHITPLLSAVYEGHVSCVK	19	Unmodified	_HHITPLLSAVYEGHVSCVK_			0	0	0	P58546	P58546	P58546	MTPN	Myotrophin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	537.532112	2146.09934	0.93643	0.00050336	1.0378	0.00055787	1.9743	0.0010612	537.783771976172	9.5849	0.28367	9.5849	9.4874	9.7711	0	639	61	0.896281965493857	0.0406484069793801	0.896281965493857	722.579941635051	0	32.7706287457589						685	33	3	NaN	NaN	NaN	0.031875	1	33972	41.87	41.351	1	393160			8393	1300	7122	7310	8393	8393		
HHITPLLSAVYEGHVSCVK	19	Unmodified	_HHITPLLSAVYEGHVSCVK_			0	0	0	P58546	P58546	P58546	MTPN	Myotrophin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.373724	2146.09934	2.0538	0.0014713	1.2131	0.00086903	3.2669	0.0023403	716.709268326236	9.5672	0.266	9.5672	9.4962	9.7622	0	435	37	1.03374239103424	0.0241471979634897	1.03374239103424	625.051989050975	0	14.6005951269798						832	31	6	NaN	NaN	NaN	2.2828E-05	1	33973	84.58	82.191	1	333610			8394	1300	7122	7310	8394	8394		
HHLGAATPENPEIELLR	17	Unmodified	_HHLGAATPENPEIELLR_			0	0	0	Q99417	Q99417	Q99417	MYCBP	C-Myc-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.002396	1895.98536	-0.64737	-0.00040979	0.24964	0.00015802	-0.39773	-0.00025177	633.336932459368	9.2391	0.12419	9.2391	9.2036	9.3278	0	723	31	0.839303037468863	0.0203892128493071	0.839303037468863	507.914136238946	0	12.3387727324077						257	15	4	NaN	NaN	NaN	1.0398E-06	1	29519	117.21	108.83	1	65361			8395	2636	7123	7311	8395	8395		
HHLGDDVVLFTTDGAHK	17	Unmodified	_HHLGDDVVLFTTDGAHK_			0	0	0	P16278	P16278	P16278	GLB1	Beta-galactosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	466.235242	1860.91186	-1.278	-0.00059586	1.228	0.00057255	-0.050003	-2.3313E-05	466.235915228718	8.5205	0.15961	8.5205	8.4672	8.6268	0	768	28	0.808687310729125	0.0183898836962016	0.808687310729125	652.602182953066	0	14.8404433767777						300	19	4	NaN	NaN	NaN	0.012025	1	28715	31.801	28.296	1	86501			8396	725	7124	7312	8396	8396		
HHPDLIFCR	9	Unmodified	_HHPDLIFCR_			0	0	0	Q7RTV0	Q7RTV0	Q7RTV0	PHF5A	PHD finger-like domain-containing protein 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.795475	1193.5764	1.0808	0.00064613	0.31215	0.0001866	1.393	0.00083273	597.796815817124	5.8332	0.28376	5.8332	5.6647	5.9485	0	594	46	0.926715457081489	0.030408192841195	0.926715457081489	375.470634088728	0	12.3202687085123						505	22	3	NaN	NaN	NaN	0.011011	1	9255	58.286	42.704	1	152440			8397	2126	7125	7313	8397	8397		
HHPQVLSMK	9	Unmodified	_HHPQVLSMK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.527171	1075.55968	-0.69394	-0.00024949	1.723	0.00061946	1.029	0.00036997	359.527941121056	2.8804	0.14188	2.8804	2.836	2.9779	0	861	22	0.745211914437924	0.0143631278163247	0.745211914437924	453.460290735314	0	8.73994093394441						198	17	3	NaN	NaN	NaN	0.063021	1	6102	21.275	18.135	1	46201			8398	929	7126	7314	8398	8398		
HHSLGGQYGVQGFPTIK	17	Unmodified	_HHSLGGQYGVQGFPTIK_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.316315	1824.92712	0.048511	2.9559E-05	-0.19014	-0.00011586	-0.14163	-8.6298E-05	609.650762177946	8.7334	0.17756	8.7334	8.6446	8.8221	0	684	49	0.86578508874114	0.0325548466595607	0.86578508874114	524.088083648357	0	19.7065154172186						523	21	4	NaN	NaN	NaN	0.00059929	1	27854	73.502	59.724	1	128300			8399	1811	7127	7315	8399	8399		
HHVLGTITTDK	11	Unmodified	_HHVLGTITTDK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	407.891055	1220.65134	-1.0191	-0.00041568	-0.75569	-0.00030824	-1.7748	-0.00072391	407.890893602765	3.439	0.088772	3.439	3.4124	3.5012	0	861	22	0.745211914437924	0.0143631278163247	0.745211914437924	452.779237699561	0	8.72681439689808						102	11	3	NaN	NaN	NaN	0.062835	1	10039	13.274	11.303	1	21607			8400	1452;1818	7128	7316	8400	8400		
HHYEQQQEDLAR	12	Unmodified	_HHYEQQQEDLAR_			0	0	0	Q14839;Q8TDI0;Q12873	Q14839	Q14839	CHD4;CHD5;CHD3	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5;Chromodomain-helicase-DNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.574566	1552.70187	0.45969	0.00023839	0.84751	0.0004395	1.3072	0.00067788	518.575085378063	2.3217	0.133	2.3217	2.2951	2.4281	0	774	22	0.804600385996946	0.0143072230251827	0.804600385996946	487.693736388555	0	8.67206028723211						170	16	3	NaN	NaN	NaN	5.4846E-05	1	20139	120.33	91.686	1	35767			8401	1776	7129	7317	8401	8401		
HIADLAGNSEVILPVPAFNVINGGSHAGNK	30	Unmodified	_HIADLAGNSEVILPVPAFNVINGGSHAGNK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1004.5281	3010.56247	0.56426	0.00056681	1.2374	0.001243	1.8017	0.0018099	1004.86361242468	15.925	0.12418	15.925	15.863	15.987	0	141	94	1.2295923935727	0.0615321310038661	1.2295923935727	742.099282784371	0	37.1366564439171						725	15	4	NaN	NaN	NaN	0.0003663	1	38243	45.556	45.452	1	113510			8402	544	7130	7318	8402	8402		
HIADLAGNSEVILPVPAFNVINGGSHAGNK	30	Unmodified	_HIADLAGNSEVILPVPAFNVINGGSHAGNK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	753.647893	3010.56247	0.9062	0.00068296	2.6403	0.0019899	3.5465	0.0026728	753.90036007827	15.925	0.2128	15.925	15.828	16.041	0	378	73	1.07192009927972	0.0482012080373873	1.07192009927972	862.583852347294	0	38.7879504681561						1013	25	6	NaN	NaN	NaN	0.0056407	1	38244	44.585	44.261	1	330730			8403	544	7130	7318	8403	8403		
HIAEVSQEVTR	11	Unmodified	_HIAEVSQEVTR_			0	0	0	P61764	P61764	P61764	STXBP1	Syntaxin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.833308	1267.65206	2.7307	0.0017336	-2.7557	-0.0017494	-0.024936	-1.583E-05	634.831800851781	3.7938	0.13306	3.7938	3.7583	3.8914	0	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	386.697515540229	0	8.19042245473122						163	16	3	NaN	NaN	NaN	0.0074574	1	11443	61.48	36.226	1	30270			8404	1350	7131	7319	8404	8404		
HIAVFPCK	8	Unmodified	_HIAVFPCK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.260205	970.505857	-0.098503	-4.7898E-05	0.60735	0.00029533	0.50885	0.00024743	486.261065583212	5.3987	0.26599	5.3987	5.3366	5.6026	0	732	43	0.833184998970724	0.0285607760310633	0.833184998970724	338.460767366856	0	11.6021077959977						659	31	4	NaN	NaN	NaN	0.0029248	1	3642	61.494	44.947	1	240340			8405	288	7132	7320	8405	8405		
HIDCAAIYGNEPEIGEALK	19	Unmodified	_HIDCAAIYGNEPEIGEALK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.673728	2098.99935	0.29599	0.00020739	-1.0529	-0.00073771	-0.75686	-0.00053031	701.007654514759	11.412	0.062098	11.412	11.385	11.447	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	543.242856446293	0	12.2805640249086						199	8	4	NaN	NaN	NaN	0.00062801	1	33292	45.654	44.559	1	43504			8406	698	7133	7321	8406	8406		
HIDCAAIYGNEPEIGEALK	19	Unmodified	_HIDCAAIYGNEPEIGEALK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.673728	2098.99935	1.0782	0.00075549	-0.31656	-0.00022181	0.76167	0.00053369	701.007914328728	11.412	0.16849	11.412	11.367	11.536	0	510	115	0.983355730988811	0.0768583642806943	0.983355730988811	594.671425106116	0	46.4790833853853						695	20	4	NaN	NaN	NaN	0.0044917	1	33293	52.201	38.677	1	138830			8407	698	7133	7321	8407	8407		
HIDCAAIYGNEPEIGEALK	19	Unmodified	_HIDCAAIYGNEPEIGEALK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.50695	2098.99935	1.918	0.0020149	0.55572	0.00058379	2.4738	0.0025987	1051.00883636558	11.42	0.053228	11.42	11.394	11.447	0	126	28	1.23951419873743	0.0178568021667442	1.23951419873743	499.721495374925	0	7.19913324951756						124	7	3	NaN	NaN	NaN	0.0026294	1	33294	17.807	16.713	1	19002			8408	698	7133	7321	8408	8408		
HIDCAHVYQNENEVGVAIQEK	21	Unmodified	_HIDCAHVYQNENEVGVAIQEK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.38865	2452.14412	1.1657	0.00095403	0.85584	0.00070041	2.0216	0.0016544	818.723827611526	7.5447	0.11526	7.5447	7.5092	7.6245	0	531	40	0.969216233931596	0.0262699700789047	0.969216233931596	585.566103225326	0	15.8713850144155						410	14	5	NaN	NaN	NaN	1.0171E-22	1	36585	117.9	110.91	1	100190			8409	708	7134	7322	8409	8409		
HIDCAHVYQNENEVGVAIQEK	21	Unmodified	_HIDCAHVYQNENEVGVAIQEK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	614.043307	2452.14412	0.91869	0.00056411	1.5556	0.00095523	2.4743	0.0015193	614.295372225157	7.5447	0.097545	7.5447	7.5003	7.5979	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	757.939699833729	0	16.313269615246						261	12	5	NaN	NaN	NaN	9.4421E-06	1	36586	62.711	57.629	1	64458			8410	708	7134	7322	8410	8410		
HIDFSLR	7	Unmodified	_HIDFSLR_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.240327	886.466101	0.63744	0.00028317	-0.063679	-2.8289E-05	0.57376	0.00025489	444.240496184318	7.3674	0.45228	7.3674	7.3053	7.7576	0	699	55	0.85560534332665	0.0366598233123934	0.85560534332665	348.028412584068	0	14.9118518397958						1122	52	5	NaN	NaN	NaN	4.5214E-07	1	2097	161.47	73.273	1	1690800			8411	1089	7135	7323	8411	8411		
HIDIHPENTHILDGNAVDLQAECDAFEEK	29	Unmodified	_HIDIHPENTHILDGNAVDLQAECDAFEEK_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	833.388747	3329.52588	2.1063	0.0017554	-0.26352	-0.00021962	1.8428	0.0015358	833.639263534488	12.76	0.12416	12.76	12.715	12.839	-1.7764E-15	525	61	0.973257487423603	0.0404181457297914	0.973257487423603	782.844108652178	0	32.5105202642442						657	15	6	NaN	NaN	NaN	1.5433E-10	1	38565	62.65	61.277	1	182260			8412	1092	7136	7324	8412	8412		
HIDLVEGDEGR	11	Unmodified	_HIDLVEGDEGR_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.301841	1238.58913	2.4855	0.0015418	6.6521	0.0041263	9.1376	0.0056681	620.809423066907	5.0351	0.17733	5.0351	4.9819	5.1593	0	552	37	0.955063035883597	0.0242777450705638	0.955063035883597	386.795242358411	0	9.83235235336758						434	21	4	NaN	NaN	NaN	4.7472E-05	1	10570	111.61	100.25	1	111650			8413	765	7137	7325	8413	8413		
HIDMVEGDEGR	11	Unmodified	_HIDMVEGDEGR_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.280051	1256.54555	3.0037	0.0018901	-1.066	-0.00067082	1.9377	0.0012193	629.279397180706	3.8914	0.16847	3.8914	3.8558	4.0243	4.4409E-16	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	383.456952374706	0	9.8348883142076						284	20	2	NaN	NaN	NaN	5.2078E-05	1	11101	83.358	78.818	1	86675			8414	1223	7138	7326	8414	8414		
HIDSAHLYNNEEQVGLAIR	19	Unmodified	_HIDSAHLYNNEEQVGLAIR_			0	0	0	P42330;Q04828	P42330	P42330	AKR1C3;AKR1C1	Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.034536	2178.08178	0.75613	0.00054973	0.56176	0.00040842	1.3179	0.00095815	727.369134268782	9.2479	0.11531	9.2479	9.2213	9.3366	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	573.754275434022	0	13.4596242363585						308	14	4	NaN	NaN	NaN	1.1884E-19	1	34420	125.14	117.17	1	96110			8415	1048	7139	7327	8415	8415		
HIEIFTDLSSR	11	Unmodified	_HIEIFTDLSSR_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.343509	1316.67246	1.3547	0.00089322	0.32549	0.00021461	1.6802	0.0011078	659.343907549134	10.472	0.21284	10.472	10.418	10.631	0	513	43	0.981336640919867	0.0282692223025561	0.981336640919867	397.176019960297	0	11.4413920089416						369	25	4	NaN	NaN	NaN	2.9566E-05	1	12880	87.895	59.799	1	123590			8416	674	7140	7328	8416	8416		
HIFSEDTSDFSGMSETK	17	Unmodified	_HIFSEDTSDFSGMSETK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.412188	1916.80982	2.1118	0.0020261	-0.33941	-0.00032563	1.7724	0.0017004	959.912968152875	9.2391	0.13304	9.2391	9.1947	9.3278	0	258	67	1.15196821829984	0.0439174989360049	1.15196821829984	464.716552342899	0	17.7167984054148						547	16	4	NaN	NaN	NaN	0.00060866	1	29982	55.604	54.424	1	154570			8417	994	7141	7329	8417	8417		
HIGLVYSGMGPDYR	14	Unmodified	_HIGLVYSGMGPDYR_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.257409	1563.7504	-0.16666	-8.7041E-05	-0.52502	-0.00027419	-0.69168	-0.00036123	522.257366386175	9.4253	0.097552	9.4253	9.381	9.4785	0	663	70	0.880024865079826	0.0468008560973249	0.880024865079826	533.377636622685	0	28.3657098880328						272	12	3	NaN	NaN	NaN	0.040187	1	20460	41.824	40.45	1	67819			8418	842	7142	7330	8418	8418		
HIGLVYSGMGPDYR	14	Unmodified	_HIGLVYSGMGPDYR_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.882475	1563.7504	1.8194	0.0014244	1.3212	0.0010343	3.1406	0.0024587	783.385587100135	9.4342	0.2128	9.4342	9.3721	9.5849	0	363	70	1.08195024817156	0.046157799047351	1.08195024817156	437.178039275271	0	18.6507430622477						797	25	5	NaN	NaN	NaN	2.7894E-09	1	20461	122.51	118.9	1	293170			8419	842	7142	7330	8419	8419		
HIGTSALMDLLLR	13	Unmodified	_HIGTSALMDLLLR_			0	0	0	O75170	O75170	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.60615	1438.79662	-2.1646	-0.0010403	0.04944	2.3761E-05	-2.1151	-0.0010165	480.605925800741	16.856	0.11533	16.856	16.83	16.945	0	732	19	0.833184998970724	0.0122403302193221	0.833184998970724	505.372507935392	0	7.42443321535796						138	14	3	NaN	NaN	NaN	0.0023041	1	16645	85.716	0	1	28400			8420	309	7143	7331	8420	8420		
HIIEDPCTLR	10	Unmodified	_HIIEDPCTLR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.31898	1252.62341	1.7378	0.0010902	-6.0008	-0.0037644	-4.263	-0.0026742	627.815987552036	5.7978	0.27491	5.7978	5.7534	6.0283	0	549	67	0.957085760909907	0.0445277082686212	0.957085760909907	387.566614223673	0	18.0312505291085						745	32	3	NaN	NaN	NaN	0.056168	1	10987	30.918	20.216	1	263830			8421	2149	7144	7332	8421	8421		
HIIEDTEEAR	10	Unmodified	_HIIEDTEEAR_			0	0	0	Q99707	Q99707	Q99707	MTR	Methionine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.796392	1211.57823	1.8573	0.001127	-3.8046	-0.0023086	-1.9472	-0.0011816	606.794805024761	3.1464	0.097524	3.1464	3.1109	3.2084	0	570	22	0.942920803299286	0.014172805463205	0.942920803299286	381.971579950077	0	5.7413187578037						80	12	2	NaN	NaN	NaN	0.0088771	1	9775	40.502	37.904	1	14366			8422	2666	7145	7333	8422	8422		
HIITLGQVIHK	11	Unmodified	_HIITLGQVIHK_			0	0	0	Q8NB16	Q8NB16	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	420.25919	1257.75574	-0.3381	-0.00014209	-2.2297	-0.00093704	-2.5678	-0.0010791	420.258181572761	7.7309	0.19524	7.7309	7.6865	7.8818	0	831	31	0.76571780291124	0.0204887515295875	0.76571780291124	465.085065101537	0	12.4445485043685						311	23	3	NaN	NaN	NaN	0.00027694	1	11155	108.3	106.8	1	135410			8423	2281	7146	7334	8423	8423		
HIIYVDNK	8	Unmodified	_HIIYVDNK_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.274367	1000.53418	1.4488	0.00072626	-2.7695	-0.0013883	-1.3206	-0.000662	501.274180959966	3.7317	0.10646	3.7317	3.6874	3.7938	0	672	28	0.873923798053065	0.0183082845696197	0.873923798053065	354.861023234676	0	7.43416829993731						164	13	3	NaN	NaN	NaN	0.0028727	1	4300	90.308	78.242	1	46683			8424	260	7147	7335	8424	8424		
HILANFK	7	Unmodified	_HILANFK_			0	0	0	P13693;Q56UQ5	P13693	P13693	TPT1	Translationally-controlled tumor protein;TPT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	421.747788	841.481023	0.74179	0.00031285	0.75199	0.00031715	1.4938	0.00063	421.748164920099	4.9465	0.18617	4.9465	4.9021	5.0883	0	711	46	0.847456455381371	0.030568952954407	0.847456455381371	344.994593166032	0	12.4444429221691						453	22	4	NaN	NaN	NaN	0.00019197	1	1447	115.83	44.25	1	419480			8425	682	7148	7336	8425	8425		
HILGFDTGDAVLNEAAQILR	20	Unmodified	_HILGFDTGDAVLNEAAQILR_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.383165	2152.12767	-0.050445	-3.6239E-05	0.36259	0.00026048	0.31214	0.00022424	718.717390338324	19.667	0.044314	19.667	19.649	19.694	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	552.972192318329	0	8.58606688405212						107	6	4	NaN	NaN	NaN	1.5572E-07	1	34069	82.437	73.28	1	23154			8426	3324	7149	7337	8426	8426		
HILGFDTGDAVLNEAAQILR	20	Unmodified	_HILGFDTGDAVLNEAAQILR_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.383165	2152.12767	0.99926	0.00071785	0.038814	2.7883E-05	1.0381	0.00074573	718.717371404312	19.667	0.10641	19.667	19.641	19.747	0	453	40	1.02166545906632	0.0261829569110703	1.02166545906632	617.738563903923	0	15.8312313071484						341	13	5	NaN	NaN	NaN	4.5196E-11	1	34070	181.44	178.89	1	138850			8427	3324	7149	7337	8427	8427		
HILILQNK	8	Unmodified	_HILILQNK_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.808377	977.6022	1.0189	0.00049906	0.39055	0.00019129	1.4094	0.00069035	489.808562728966	5.7002	0.23941	5.7002	5.6559	5.8953	0	708	40	0.849494101904619	0.0264857303381943	0.849494101904619	345.050940433423	0	10.7580807692131						492	28	4	NaN	NaN	NaN	3.2569E-05	1	3800	127.95	92.87	1	263350			8428	1027	7150	7338	8428	8428		
HILLAVANDEELNQLLK	17	Unmodified	_HILLAVANDEELNQLLK_			0	0	0	O75367;Q9P0M6	O75367	O75367	H2AFY;H2AFY2	Core histone macro-H2A.1;Core histone macro-H2A.2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.04129	1932.06803	1.55	0.0014989	-2.4972	-0.0024149	-0.94717	-0.00091595	967.540410345617	15.97	0.15959	15.97	15.934	16.094	0	174	52	1.20774045859593	0.0338036309766956	1.20774045859593	487.188035653217	0	13.63597986328						454	19	5	NaN	NaN	NaN	0.044172	1	30368	30.349	26.844	1	300400			8429	324	7151	7339	8429	8429		
HILLAVANDEELNQLLK	17	Unmodified	_HILLAVANDEELNQLLK_			0	0	0	O75367;Q9P0M6	O75367	O75367	H2AFY;H2AFY2	Core histone macro-H2A.1;Core histone macro-H2A.2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.029952	1932.06803	0.70951	0.00045765	-0.69585	-0.00044884	0.013658	8.81E-06	645.36431516057	15.97	0.22169	15.97	15.881	16.103	0	516	64	0.979317271586824	0.0424361193214464	0.979317271586824	592.565077282935	0	25.6772376581855						834	26	5	NaN	NaN	NaN	5.7668E-05	1	30369	148.76	147.88	1	338020			8430	324	7151	7339	8430	8430		
HIMGQNVADYMR	12	Unmodified	_HIMGQNVADYMR_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.834471	1433.65439	2.6681	0.0019152	1.4199	0.0010193	4.088	0.0029345	717.836164993096	8.0059	0.22182	8.0059	7.8729	8.0947	0	468	76	1.01159370163332	0.0503588231991811	1.01159370163332	409.074820980162	0	20.3644274887387						1131	26	4	NaN	NaN	NaN	1.436E-07	1	16490	167.76	157.67	1	1589800			8431	1086	7152	7340	8431	8431		
HIMGQNVADYMR	12	Oxidation (M)	_HIM(Oxidation (M))GQNVADYMR_	HIM(1)GQNVADYMR	HIM(93)GQNVADYM(-93)R	0	1	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.831928	1449.6493	2.0901	0.001517	-0.98757	-0.00071681	1.1025	0.00080023	725.831696931902	6.1702	0.19512	6.1702	6.117	6.3121	0	489	49	0.997481546940468	0.03226750840465	0.997481546940468	403.325532285443	0	13.0471686847228						624	23	5	NaN	NaN	NaN	1.139E-06	1	16960	99.174	97.672	2	320270			8432	1086	7152	7341	8432	8432	382;383	
HIMGQNVADYMR	12	Oxidation (M)	_HIMGQNVADYM(Oxidation (M))R_	HIMGQNVADYM(1)R	HIM(-47)GQNVADYM(47)R	0	1	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.831928	1449.6493	2.1489	0.0015597	-0.69868	-0.00050712	1.4502	0.0010526	725.831538669982	5.177	0.1596	5.177	5.1061	5.2657	0	489	40	0.997481546940468	0.0262227841979634	0.997481546940468	403.325531182456	0	10.6030215778595						538	19	5	NaN	NaN	NaN	0.021791	1	16961	50.297	47.626	2	177690			8433	1086	7152	7341	8433	8433	382;383	
HIMSEPEEITTMSGQK	16	Unmodified	_HIMSEPEEITTMSGQK_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.424044	1816.83353	2.6371	0.0023982	-1.0688	-0.00097202	1.5683	0.0014262	909.423362969251	7.7753	0.10645	7.7753	7.7398	7.8463	0	300	37	1.12400150285141	0.0240011742014585	1.12400150285141	453.613758098144	0	9.68616394255042						251	13	4	NaN	NaN	NaN	0.0043821	1	27645	38.1	28.838	1	42186			8434	3261	7153	7342	8434	8434		
HINTWVAEK	9	Unmodified	_HINTWVAEK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.290548	1096.56654	1.6371	0.00089926	-1.3796	-0.0007578	0.25752	0.00014145	549.289892802744	4.3968	0.25712	4.3968	4.3169	4.5741	0	654	49	0.886123392477847	0.0325142083387643	0.886123392477847	359.386976363431	0	13.1868576350795						560	30	4	NaN	NaN	NaN	2.5849E-05	1	6621	109.88	76.451	1	296430			8435	961	7154	7343	8435	8435		
HIQDLNWQR	9	Unmodified	_HIQDLNWQR_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.309803	1208.60505	1.716	0.0010387	-3.827	-0.0023165	-2.1109	-0.0012778	605.307527334656	6.117	0.23945	6.117	6.0372	6.2767	0	582	46	0.934820374997243	0.0303913445314729	0.934820374997243	378.700636638047	0	12.3116930590959						402	26	3	NaN	NaN	NaN	0.010244	1	9696	60.589	28.462	1	169900			8436	370	7155	7344	8436	8436		
HIQEHYGGTATFYLSQAADGAK	22	Unmodified	_HIQEHYGGTATFYLSQAADGAK_			0	0	0	P51570	P51570	P51570	GALK1	Galactokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	592.035645	2364.11347	1.0291	0.00060926	4.6927	0.0027782	5.7218	0.0033875	592.290630884931	9.1858	0.16849	9.1858	9.0883	9.2568	0	591	28	0.928742107665821	0.0182348035691394	0.928742107665821	748.305803646474	0	14.6921402900904						161	20	3	NaN	NaN	NaN	0.068937	1	36164	29.217	28.406	1	49922			8437	1189	7156	7345	8437	8437		
HIQQVDCSGNDLEQLHIK	18	Unmodified	_HIQQVDCSGNDLEQLHIK_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.016377	2133.0273	1.6779	0.0011947	-1.6895	-0.001203	-0.011624	-8.2763E-06	712.348390949126	8.0591	0.13315	8.0591	7.9615	8.0947	0	561	91	0.948993180460448	0.0606692185244189	0.948993180460448	573.831009430771	0	36.6850675263564						471	16	4	NaN	NaN	NaN	3.7834E-07	1	33779	97.084	86.325	1	90526			8438	1227	7157	7346	8438	8438		
HISDLYEDLR	10	Unmodified	_HISDLYEDLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.814584	1259.61462	1.2714	0.000802	1.4727	0.00092897	2.744	0.001731	630.815533726627	9.2303	0.15967	9.2303	9.177	9.3366	0	519	40	0.97729762293174	0.0262627024268471	0.97729762293174	395.727315534755	0	10.6342924470515						268	19	2	NaN	NaN	NaN	1.5208E-05	1	11195	102.55	83.29	1	128590			8439	1816	7158	7347	8439	8439		
HISEGCVFIYCQVGEK	16	Unmodified	_HISEGCVFIYCQVGEK_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.447853	1924.88115	2.1536	0.0020749	-1.7406	-0.001677	0.413	0.00039791	963.948473660068	9.9307	0.13298	9.9307	9.8952	10.028	0	240	46	1.16393748060522	0.0299211058430284	1.16393748060522	469.530937438325	0	12.0701370217612						409	16	4	NaN	NaN	NaN	0.0039231	1	30168	38.584	35.079	1	82963			8440	2704	7159	7348	8440	8440		
HISEGCVFIYCQVGEK	16	Unmodified	_HISEGCVFIYCQVGEK_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.634328	1924.88115	1.2099	0.0007775	0.37743	0.00024255	1.5873	0.00102	643.30318690617	9.9307	0.22165	9.9307	9.8243	10.046	0	558	52	0.951016745717027	0.034395858934352	0.951016745717027	575.456302282719	0	20.8127920831477						461	26	5	NaN	NaN	NaN	0.00066191	1	30170	55.578	48.831	1	113330			8441	2704	7159	7348	8441	8441		
HISFFDFFK	9	Unmodified	_HISFFDFFK_			0	0	0	Q6UW63	Q6UW63	Q6UW63	KDELC1	KDEL motif-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.297842	1186.58113	-0.3466	-0.00020598	0.12556	7.4617E-05	-0.22105	-0.00013137	594.297928382104	17.353	0.11528	17.353	17.309	17.424	0	585	28	0.932794566565362	0.0182322776363114	0.932794566565362	377.95912437945	0	7.38753841184638						219	14	3	NaN	NaN	NaN	0.00093127	1	9054	86.205	46.881	1	49291			8442	2085	7160	7349	8442	8442		
HISQISVAEDDDESLLGHLMIVGK	24	Unmodified	_HISQISVAEDDDESLLGHLMIVGK_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	652.333718	2605.30577	0.14015	9.1422E-05	-0.58499	-0.00038161	-0.44484	-0.00029019	652.584136665438	15.908	0.1685	15.908	15.863	16.032	0	585	34	0.932794566565362	0.0222838959578864	0.932794566565362	751.164770837831	0	17.9448703932892						506	20	6	NaN	NaN	NaN	8.5808E-10	1	37260	89.923	89.408	1	188810			8443	1149	7161	7350	8443	8443		
HISQISVAEDDDESLLGHLMIVGK	24	Unmodified	_HISQISVAEDDDESLLGHLMIVGK_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	869.442532	2605.30577	1.3097	0.0011387	0.33266	0.00028923	1.6424	0.001428	869.777399155325	15.908	0.18623	15.908	15.863	16.049	0	423	103	1.04178812298108	0.0683322091659233	1.04178812298108	629.202961086336	0	41.2702231829444						1722	22	6	NaN	NaN	NaN	2.7363E-13	1	37261	109.42	107.8	1	650640			8444	1149	7161	7350	8444	8444		
HISQISVAEDDDESLLGHLMIVGK	24	Oxidation (M)	_HISQISVAEDDDESLLGHLM(Oxidation (M))IVGK_	HISQISVAEDDDESLLGHLM(1)IVGK	HISQISVAEDDDESLLGHLM(72)IVGK	0	1	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	874.77417	2621.30068	1.8582	0.0016255	-4.6768	-0.0040912	-2.8186	-0.0024656	875.105382023962	14.453	0.14187	14.453	14.4	14.542	-1.7764E-15	450	46	1.02367897599655	0.0302027620184235	1.02367897599655	618.24567617842	0	18.2408034788039						726	17	6	NaN	NaN	NaN	1.9765E-06	1	37320	72.311	69.717	1	207220			8445	1149	7161	7351	8445	8445	416	
HISVLVPCFLTFPK	14	Unmodified	_HISVLVPCFLTFPK_			0	0	0	Q9Y3T9	Q9Y3T9	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.309333	1656.90617	-1.0953	-0.00060603	-0.1447	-8.0066E-05	-1.24	-0.0006861	553.309539641297	17.078	0.1507	17.078	17.016	17.167	0	645	25	0.892219381832517	0.0162548450794181	0.892219381832517	540.502048426352	0	9.84710402079975						271	18	4	NaN	NaN	NaN	0.0024683	1	23251	57.293	55.451	1	54428			8446	3399	7162	7352	8446	8446		
HITIFSPEGR	10	Unmodified	_HITIFSPEGR_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.809105	1155.60366	1.2851	0.00074385	-1.5354	-0.00088871	-0.25026	-0.00014485	578.808014158878	7.2166	0.40798	7.2166	7.0214	7.4294	0	570	91	0.942920803299286	0.06080379541605	0.942920803299286	382.179870853768	0	24.6446855326715						1119	47	2	NaN	NaN	NaN	1.577E-05	1	8220	133.98	80.099	1	533690			8447	1314	7163	7353	8447	8447		
HITLYDIR	8	Unmodified	_HITLYDIR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.787641	1029.56073	1.9991	0.0010311	-0.43808	-0.00022596	1.5611	0.00080518	515.787753465888	7.7398	0.10646	7.7398	7.6956	7.802	8.8818E-16	612	28	0.914549654013882	0.0182550299424538	0.914549654013882	371.215291769423	0	7.40970841397819						182	13	3	NaN	NaN	NaN	2.1368E-05	1	4985	147.16	100.35	1	48622			8448	2107	7164	7354	8448	8448		
HITTISDETSEQVTR	15	Unmodified	_HITTISDETSEQVTR_			0	0	0	Q06546	Q06546	Q06546	GABPA	GA-binding protein alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.92358	1715.83261	2.3603	0.0020273	-1.9935	-0.0017122	0.36685	0.00031509	859.422930228779	5.2657	0.088698	5.2657	5.2479	5.3366	0	366	37	1.07994477139643	0.024074020010092	1.07994477139643	436.028065085612	0	9.71989368517387						181	11	3	NaN	NaN	NaN	0.0053237	1	24928	58.476	56.492	1	37334			8449	1561	7165	7355	8449	8449		
HIVENAVQK	9	Unmodified	_HIVENAVQK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.290548	1036.56654	1.763	0.00091549	-0.63163	-0.000328	1.1313	0.0005875	519.290265604313	2.3217	0.133	2.3217	2.304	2.437	0	708	25	0.849494101904619	0.0162977768340994	0.849494101904619	344.778525528858	0	6.61467037106053						140	16	2	NaN	NaN	NaN	5.4263E-06	1	5157	150.24	112.63	1	34697			8450	74	7166	7356	8450	8450		
HIVEWNVQTCK	11	Unmodified	_HIVEWNVQTCK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.350811	1412.68707	1.6874	0.0011936	-2.2247	-0.0015736	-0.53726	-0.00038003	707.348457822696	6.5427	0.14187	6.5427	6.4895	6.6313	0	489	28	0.997481546940468	0.0181517240953996	0.997481546940468	403.425276044406	0	7.34135315718828						235	17	3	NaN	NaN	NaN	0.0051835	1	15846	64.906	57.259	1	78210			8451	1807	7167	7357	8451	8451		
HIVPACFLAPLK	12	Unmodified	_HIVPACFLAPLK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.389208	1364.76386	2.24	0.0015308	-2.1069	-0.0014399	0.13307	9.0936E-05	683.889637569209	12.875	0.097563	12.875	12.83	12.928	0	471	19	1.00957851518677	0.0120902839502059	1.00957851518677	408.456792311363	0	4.89150524317677						173	12	4	NaN	NaN	NaN	0.050043	1	14350	43.734	36.088	1	62906			8452	209	7168	7358	8452	8452		
HIYYITGETK	10	Unmodified	_HIYYITGETK_			0	0	0	P07900;Q58FG0	P07900	P07900	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.816596	1223.61864	2.2194	0.0013601	0.53071	0.00032523	2.7501	0.0016853	612.816769122071	5.1947	0.35471	5.1947	5.1061	5.4608	0	555	58	0.953040030838688	0.0384371124263597	0.953040030838688	386.028011499877	0	15.5689179862543						1459	41	4	NaN	NaN	NaN	3.5202E-14	1	10119	167.04	136.45	1	3340500			8453	567	7169	7359	8453	8453		
HKPDFISLFK	10	Unmodified	_HKPDFISLFK_			0	0	1	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.232641	1230.67609	-2.0102	-0.00082665	-0.85966	-0.00035352	-2.8698	-0.0011802	411.23204585782	10.667	0.18618	10.667	10.596	10.782	0	837	19	0.761618911097395	0.0122983894338651	0.761618911097395	462.705796313803	0	7.47163180096788						202	22	3	NaN	NaN	NaN	0.067302	1	10336	44.82	34.732	1	39955			8454	2422	7170	7360	8454	8454		
HLAEHSPYYEAMK	13	Unmodified	_HLAEHSPYYEAMK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.366658	1574.71876	2.7589	0.002175	-1.9834	-0.0015636	0.77549	0.00061137	788.36504245533	4.6095	0.10642	4.6095	4.5741	4.6805	0	378	70	1.07192009927972	0.0461896362553218	1.07192009927972	433.09874141	0	18.6624668590576						441	13	4	NaN	NaN	NaN	0.00012575	1	20809	103.87	83.982	1	94114			8455	1608	7171	7361	8455	8455		
HLAEHSPYYEAMK	13	Unmodified	_HLAEHSPYYEAMK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.913531	1574.71876	1.5562	0.00081843	1.0856	0.00057091	2.6418	0.0013893	526.248154460749	4.6095	0.20391	4.6095	4.5563	4.7603	0	639	37	0.896281965493857	0.0243721251806781	0.896281965493857	543.197787749356	0	14.7708924095108						446	24	4	NaN	NaN	NaN	1.1831E-05	1	20810	130.79	113.06	1	226940			8456	1608	7171	7361	8456	8456		
HLAEQFAVGEIITDMAK	17	Unmodified	_HLAEQFAVGEIITDMAK_			0	0	0	Q99986	Q99986	Q99986	VRK1	Serine/threonine-protein kinase VRK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.988988	1871.94513	0.061556	3.8472E-05	-0.08895	-5.5593E-05	-0.027394	-1.7121E-05	625.323351612062	16.245	0.15072	16.245	16.165	16.315	0	555	19	0.953040030838688	0.0121388709649835	0.953040030838688	576.797168525953	0	7.34666559131074						191	18	4	NaN	NaN	NaN	0.0079527	1	28982	45.654	43.67	1	39229			8457	2685	7172	7362	8457	8457		
HLAEQFAVGEIITDMAK	17	Unmodified	_HLAEQFAVGEIITDMAK_			0	0	0	Q99986	Q99986	Q99986	VRK1	Serine/threonine-protein kinase VRK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.979844	1871.94513	0.94547	0.00088588	0.72999	0.00068398	1.6755	0.0015699	937.481958989395	16.236	0.11527	16.236	16.2	16.315	0	225	31	1.17390432875292	0.0199268519086451	1.17390432875292	473.647378060615	0	8.04009400796616						294	14	4	NaN	NaN	NaN	0.00045548	1	28983	32.61	26.405	1	52286			8458	2685	7172	7362	8458	8458		
HLAGLGLTEAIDK	13	Unmodified	_HLAGLGLTEAIDK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.374809	1336.73507	2.2772	0.0015243	0.38278	0.00025622	2.66	0.0017805	669.37523904264	9.7445	0.26601	9.7445	9.6824	9.9484	0	474	55	1.00756305028564	0.0362859024304513	1.00756305028564	407.727058978603	0	14.6836907885399						737	31	5	NaN	NaN	NaN	3.3883E-11	1	13510	157.77	141.11	1	549420			8459	1164	7173	7363	8459	8459		
HLAGVPLIGWVLR	13	Unmodified	_HLAGVPLIGWVLR_			0	0	0	Q8NFW8	Q8NFW8	Q8NFW8	CMAS	N-acylneuraminate cytidylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.625873	1429.85579	-1.538	-0.0007346	0.054621	2.6088E-05	-1.4834	-0.00070851	477.625930479146	17.876	0.12413	17.876	17.805	17.929	0	720	16	0.841341816837976	0.0101924806406992	0.841341816837976	510.350409951316	0	6.18266745964371						138	15	2	NaN	NaN	NaN	0.038989	1	16397	34.781	30.253	1	30632			8460	2322	7174	7364	8460	8460		
HLAILGAGLMGAGIAQVSVDK	21	Unmodified	_HLAILGAGLMGAGIAQVSVDK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.378587	2020.11393	0.88657	0.00059789	1.1573	0.00078049	2.0439	0.0013784	674.713672003773	15.837	0.11528	15.837	15.801	15.916	0	393	25	1.0618830335572	0.0160648436588446	1.0618830335572	642.32440028197	0	9.71749311618987						286	14	5	NaN	NaN	NaN	0.00097904	1	31994	61.067	59.592	1	66773			8461	1026	7175	7365	8461	8461		
HLALNLQEK	9	Unmodified	_HLALNLQEK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.306198	1064.59784	1.6958	0.00090437	-0.59114	-0.00031526	1.1046	0.00058911	533.305792812457	5.7445	0.14184	5.7445	5.7002	5.8421	0	612	19	0.914549654013882	0.0121658030676073	0.914549654013882	371.054064454488	0	4.93594924646931						222	17	3	NaN	NaN	NaN	1.9899E-06	1	5839	171.75	141.19	1	91788			8462	1764	7176	7366	8462	8462		
HLANMMGEDPETFTQEDIDR	20	Unmodified	_HLANMMGEDPETFTQEDIDR_			0	0	0	P82933	P82933	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.67558	2348.00491	0.6179	0.00048423	1.5884	0.0012448	2.2064	0.0017291	784.011055923989	11.518	0.08867	11.518	11.483	11.571	0	594	43	0.926715457081489	0.028363289192291	0.926715457081489	560.028509731294	0	17.1403751346296						241	11	3	NaN	NaN	NaN	5.5832E-08	1	36029	109.16	106.98	1	42208			8463	1478	7177	7367	8463	8463		
HLAPDHLLQICHR	13	Unmodified	_HLAPDHLLQICHR_			0	0	0	Q8WWQ0	Q8WWQ0	Q8WWQ0	PHIP	PH-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	403.214955	1608.83071	-1.7544	-0.00070738	1.4922	0.00060166	-0.26221	-0.00010573	403.215623075232	6.9062	0.13299	6.9062	6.8619	6.9949	0	828	22	0.767766820543916	0.0143411262073633	0.767766820543916	620.295893956669	0	11.5865148937274						125	16	3	NaN	NaN	NaN	0.0059022	1	21873	60.892	59.742	1	33771			8464	2392	7178	7368	8464	8464		
HLAPDHLLQICHR	13	Unmodified	_HLAPDHLLQICHR_			0	0	0	Q8WWQ0	Q8WWQ0	Q8WWQ0	PHIP	PH-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.284181	1608.83071	0.28646	0.00015391	-0.16674	-8.9587E-05	0.11972	6.4325E-05	537.284384628787	6.9062	0.062056	6.9062	6.8796	6.9417	0	702	22	0.853568545818287	0.0142595640059772	0.853568545818287	517.215528732742	0	8.64051044638654						103	8	3	NaN	NaN	NaN	0.00016712	1	21874	64.064	55.087	1	20305			8465	2392	7178	7368	8465	8465		
HLAPEVFR	8	Unmodified	_HLAPEVFR_			0	0	0	O14639	O14639	O14639	ABLIM1	Actin-binding LIM protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.769252	967.52395	0.5714	0.000277	0.60892	0.00029518	1.1803	0.00057218	484.769482288628	5.8598	0.070941	5.8598	5.8243	5.8953	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	364.933048894328	0	6.59974952211525						108	9	2	NaN	NaN	NaN	0.014183	1	3584	63.301	35.597	1	29548			8466	109	7179	7369	8466	8466		
HLAPPGLHPVPGGVFPVPPAAVVLMK	26	Unmodified	_HLAPPGLHPVPGGVFPVPPAAVVLMK_			0	0	0	Q12996	Q12996	Q12996	CSTF3	Cleavage stimulation factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	650.125174	2596.47159	0.24594	0.00015989	1.9819	0.0012885	2.2278	0.0014483	650.37705899579	16.794	0.12413	16.794	16.714	16.839	0	411	22	1.04982941439551	0.0140693480868574	1.04982941439551	845.426331192081	0	11.3300286429727						194	15	4	NaN	NaN	NaN	0.023557	1	37234	13.062	13.062	1	31198			8467	1617	7180	7370	8467	8467		
HLAVMPHPER	10	Unmodified	_HLAVMPHPER_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	396.209842	1185.6077	-0.54708	-0.00021676	1.8207	0.00072138	1.2736	0.00050462	396.210630228341	3.7051	0.25719	3.7051	3.6342	3.8914	0	816	55	0.775960037304758	0.0368797627741104	0.775960037304758	471.616824711251	0	22.4149644046669						486	30	4	NaN	NaN	NaN	2.7969E-05	1	9025	94.806	77.411	1	125260			8468	141	7181	7371	8468	8468		
HLCEPGADGAETFADGVPR	19	Unmodified	_HLCEPGADGAETFADGVPR_			0	0	0	Q14839;Q8TDI0	Q14839	Q14839	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.970656	1997.89014	1.1092	0.00073982	1.4045	0.00093677	2.5137	0.0016766	667.306314716646	8.9642	0.097542	8.9642	8.9198	9.0174	0	492	40	0.995464410099171	0.0262336619569801	0.995464410099171	602.193983105267	0	15.8697319814147						248	12	5	NaN	NaN	NaN	1.9325E-07	1	31592	126.17	117.37	1	76504			8469	1776	7182	7372	8469	8469		
HLCQQLQAEQAAAEK	15	Unmodified	_HLCQQLQAEQAAAEK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.92286	1723.83117	3.303	0.0028503	-2.6258	-0.0022658	0.67727	0.00058443	862.921187525828	4.9376	0.097521	4.9376	4.911	5.0085	0	303	28	1.12200181823275	0.0179996405017726	1.12200181823275	452.991769951281	0	7.26709072738174						206	12	4	NaN	NaN	NaN	1.1576E-08	1	25155	104.49	99.963	1	45129			8470	1782	7183	7373	8470	8470		
HLDACETMGNATAICSDK	18	Unmodified	_HLDACETMGNATAICSDK_			0	0	0	P20020;Q16720;Q01814;P23634	P20020;P23634	P20020	ATP2B1;ATP2B3;ATP2B2;ATP2B4	Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 3;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.424249	1992.83395	1.9109	0.001906	0.31933	0.0003185	2.2302	0.0022245	997.925614747536	7.0037	0.062073	7.0037	6.9771	7.0392	0	222	28	1.17589687683038	0.0179353983689632	1.17589687683038	474.23954812146	0	7.2333513129164						123	8	3	NaN	NaN	NaN	6.9591E-07	1	31501	63.766	63.556	1	23299			8471	775;825	7184	7374	8471	8471		
HLDALLR	7	Unmodified	_HLDALLR_			0	0	0	Q8N3U4	Q8N3U4	Q8N3U4	STAG2	Cohesin subunit SA-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	419.250695	836.486836	-0.64524	-0.00027052	0.80729	0.00033846	0.16205	6.794E-05	419.251042030232	5.8332	0.18624	5.8332	5.7978	5.984	0	729	28	0.835224628594324	0.0183566683857203	0.835224628594324	340.047633660672	0	7.47360821598778						230	22	3	NaN	NaN	NaN	0.0077298	1	1389	88.35	23.803	1	66178			8472	2249	7185	7375	8472	8472		
HLDLASLK	8	Unmodified	_HLDLASLK_			0	0	0	Q8NBN7	Q8NBN7	Q8NBN7	RDH13	Retinol dehydrogenase 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.763635	895.512717	0.68283	0.00030643	-0.7285	-0.00032693	-0.045677	-2.0498E-05	448.763285611832	6.9328	0.10643	6.9328	6.9062	7.0126	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	355.424918108637	0	8.2727389047248						139	13	2	NaN	NaN	NaN	0.0004757	1	2266	105.81	35.139	1	39551			8473	2292	7186	7376	8473	8473		
HLDLSNVAGYK	11	Unmodified	_HLDLSNVAGYK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.81967	1215.62479	1.6138	0.00098253	7.732	0.0047074	9.3458	0.0056899	608.823963200907	7.8729	0.26622	7.8729	7.8108	8.077	0	522	55	0.975277694896658	0.0363914316100816	0.975277694896658	395.064300066857	0	14.7413967659655						419	31	4	NaN	NaN	NaN	1.9543E-07	1	9905	110.88	90.651	1	236940			8474	3294	7187	7377	8474	8474		
HLDQIIPR	8	Unmodified	_HLDQIIPR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.287808	990.561064	0.81115	0.00040256	0.2477	0.00012293	1.0588	0.00052549	496.287877817828	6.1347	0.20394	6.1347	6.055	6.2589	0	690	55	0.86171403876517	0.0366242054920374	0.86171403876517	349.950956641082	0	14.8734674980163						522	24	3	NaN	NaN	NaN	0.00011715	1	4074	109.36	64.59	1	166520			8475	2420	7188	7378	8475	8475		
HLEEIVEK	8	Unmodified	_HLEEIVEK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.771657	995.528761	-0.077809	-3.8809E-05	-0.53191	-0.0002653	-0.60972	-0.00030411	498.771409514484	8.4761	0.14188	8.4761	8.4229	8.5648	0	693	28	0.85967808974117	0.0183235429829339	0.85967808974117	349.100278684233	0	7.44087122628741						239	17	3	NaN	NaN	NaN	0.023431	1	4178	40.203	13.98	1	59911			8476	3158	7189	7379	8476	8476		
HLEEIVEK	8	Unmodified	_HLEEIVEK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.771657	995.528761	1.8588	0.00092713	0.17815	8.8858E-05	2.037	0.001016	498.771703400746	3.847	0.18619	3.847	3.8115	3.9977	4.4409E-16	669	28	0.875957769340875	0.0183032026669903	0.875957769340875	355.711169187803	0	7.43261130665627						184	22	3	NaN	NaN	NaN	0.00025955	1	4181	113.7	60.019	1	47932			8477	3158	7189	7379	8477	8477		
HLEEIVHVEQGR	12	Unmodified	_HLEEIVHVEQGR_			0	0	0	Q01433	Q01433	Q01433	AMPD2	AMP deaminase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.588035	1444.74228	-0.503	-0.00024274	4.0981	0.0019777	3.5951	0.001735	482.590187773484	5.3455	0.070906	5.3455	5.3189	5.3898	0	732	22	0.833184998970724	0.0142793929475133	0.833184998970724	505.352710157727	0	8.66089756098279						86	9	2	NaN	NaN	NaN	0.0021316	1	16825	35.33	30.501	1	19447			8478	1515	7190	7380	8478	8478		
HLEFYLLWTHK	11	Unmodified	_HLEFYLLWTHK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.266233	1485.77687	-1.4409	-0.00071509	2.7727	0.001376	1.3317	0.00066089	496.267435228526	13.93	0.1064	13.93	13.903	14.01	0	762	22	0.812773098473386	0.0142992632781638	0.812773098473386	492.843286038727	0	8.67068055670137						126	13	3	NaN	NaN	NaN	0.049554	1	18103	37.591	32.762	1	27033			8479	1826	7191	7381	8479	8479		
HLEGGCSVPVAVHTAMK	17	Unmodified	_HLEGGCSVPVAVHTAMK_			0	0	0	P08397	P08397	P08397	HMBS	Porphobilinogen deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.299279	1791.87601	1.588	0.00095009	0.40282	0.00024101	1.9908	0.0011911	598.299577656083	6.0638	0.13301	6.0638	6.0195	6.1525	0	561	25	0.948993180460448	0.0161918857668037	0.948993180460448	574.536490673812	0	9.80284096597723						220	16	3	NaN	NaN	NaN	0.012916	1	27022	59.731	55.748	1	59781			8480	582	7192	7382	8480	8480		
HLEGLSEEAIMELNLPTGIPIVYELDK	27	Unmodified	_HLEGLSEEAIMELNLPTGIPIVYELDK_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1008.52637	3022.55729	1.3617	0.0013733	-1.1765	-0.0011865	0.18515	0.00018673	1008.85957095382	19.986	0.04434	19.986	19.969	20.013	0	348	109	1.09197348738011	0.0722520365580226	1.09197348738011	659.029740772453	0	43.6056749302196						475	6	5	NaN	NaN	NaN	3.6615E-10	1	38264	102.92	99.392	1	143060			8481	757	7193	7383	8481	8481		
HLEIFHTEFQNLLDADK	17	Unmodified	_HLEIFHTEFQNLLDADK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.681211	2069.0218	0.41335	0.00028549	-0.092921	-6.4179E-05	0.32043	0.00022131	690.681305233725	15.278	0.10637	15.278	15.242	15.349	0	567	37	0.944945209309785	0.0242911943445451	0.944945209309785	571.497529668305	0	14.691177249039						226	13	2	NaN	NaN	NaN	0.0040284	1	32867	69.201	62.996	1	117080			8482	1694	7194	7384	8482	8482		
HLEINPDHPIVETLR	15	Unmodified	_HLEINPDHPIVETLR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	446.492884	1781.94243	-0.55717	-0.00024877	0.07858	3.5085E-05	-0.47859	-0.00021369	446.743732205847	9.4785	0.18621	9.4785	9.4076	9.5938	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	684.11219674077	0	13.1600935971294						427	22	4	NaN	NaN	NaN	0.00013694	1	26728	108.2	105.89	1	177180			8483	579	7195	7385	8483	8483		
HLEINPDHPIVETLR	15	Unmodified	_HLEINPDHPIVETLR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.988087	1781.94243	1.382	0.00082228	1.0134	0.00060294	2.3954	0.0014252	594.988526071824	9.4785	0.39903	9.4785	9.381	9.78	0	570	199	0.942920803299286	0.133935878058683	0.942920803299286	570.884578284644	0	81.0905083387426						5439	46	6	NaN	NaN	NaN	3.3126E-17	1	26729	211.52	201.27	1	12701000			8484	579	7195	7385	8484	8484		
HLEINPDHPIVETLR	15	Unmodified	_HLEINPDHPIVETLR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.978493	1781.94243	2.6098	0.0023279	0.7098	0.00063312	3.3196	0.002961	891.97929207237	9.4785	0.37241	9.4785	9.3987	9.7711	0	249	133	1.15795408347545	0.087919759218499	1.15795408347545	467.38532124765	0	35.4870762949605						3376	43	6	NaN	NaN	NaN	1.7057E-17	1	26730	212.78	195.04	1	3471400			8485	579	7195	7385	8485	8485		
HLEINPDHSIIETLR	15	Unmodified	_HLEINPDHSIIETLR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	447.491613	1785.93735	-1.2591	-0.00056345	-1.067	-0.00047747	-2.3261	-0.0010409	447.741582118287	10.8	0.14189	10.8	10.738	10.879	0	783	25	0.798467866007927	0.0163568017170922	0.798467866007927	644.554883791616	0	13.2038581373018						252	17	4	NaN	NaN	NaN	0.0032634	1	26860	73.655	70.31	1	60537			8486	567	7196	7386	8486	8486		
HLEINPDHSIIETLR	15	Unmodified	_HLEINPDHSIIETLR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	447.491613	1785.93735	0.09363	4.1899E-05	-1.1074	-0.00049554	-1.0137	-0.00045364	447.74170597611	10.826	0.17734	10.826	10.72	10.897	1.7764E-15	717	52	0.84338031290707	0.0346737156598015	0.84338031290707	680.809989843282	0	27.9899964996922						543	21	4	NaN	NaN	NaN	0.0010365	1	26861	65.408	59.031	1	197920			8487	567	7196	7386	8487	8487		
HLEINPDHSIIETLR	15	Unmodified	_HLEINPDHSIIETLR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.319725	1785.93735	1.1434	0.00068184	-0.27951	-0.00016668	0.8639	0.00051516	596.319568276539	10.809	0.23943	10.809	10.738	10.977	0	621	106	0.908462957275599	0.0711199798446877	0.908462957275599	550.01284089753	0	43.0583347902923						2534	28	5	NaN	NaN	NaN	2.3802E-24	1	26862	277.1	255.05	1	1981800			8488	567	7196	7386	8488	8488		
HLEINPDHSIIETLR	15	Unmodified	_HLEINPDHSIIETLR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.97595	1785.93735	2.9504	0.0026376	-1.0436	-0.00093299	1.9067	0.0017046	893.975146870919	10.809	0.19507	10.809	10.738	10.933	0	261	73	1.14997238118939	0.0479297749286622	1.14997238118939	464.155653879818	0	19.3455741948484						1153	23	5	NaN	NaN	NaN	2.01E-08	1	26863	105.08	83.716	1	592550			8489	567	7196	7386	8489	8489		
HLELYDR	7	Unmodified	_HLELYDR_			0	0	0	Q8TED0	Q8TED0	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.243067	944.47158	0.58377	0.00027626	3.0245	0.0014313	3.6083	0.0017076	473.24437122076	4.5563	0.15961	4.5563	4.5031	4.6627	0	717	40	0.84338031290707	0.0264894101708458	0.84338031290707	342.73424830088	0	10.7648091186105						164	19	2	NaN	NaN	NaN	0.018744	1	3139	56.091	32.782	1	56319			8490	2352	7197	7387	8490	8490		
HLEMNPHFGSHR	12	Unmodified	_HLEMNPHFGSHR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	366.175564	1460.67315	0.37158	0.00013606	-0.8669	-0.00031744	-0.49532	-0.00018137	366.175383053756	3.7583	0.070942	3.7583	3.7406	3.8115	0	900	16	0.718511479433384	0.0102779961687126	0.718511479433384	581.002435792843	0	8.31098873159374						67	9	3	NaN	NaN	NaN	0.069733	1	17280	14.455	10.847	1	12945			8491	1575	7198	7388	8491	8491		
HLEMNPHFGSHR	12	Unmodified	_HLEMNPHFGSHR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.898327	1460.67315	0.96844	0.0004725	1.6634	0.00081156	2.6318	0.0012841	487.899042001602	3.7672	0.20395	3.7672	3.714	3.9179	0	756	31	0.816857749704129	0.0204204181290417	0.816857749704129	495.398552314734	0	12.384341805477						360	24	4	NaN	NaN	NaN	3.2404E-05	1	17281	75.474	64.772	1	86271			8492	1575	7198	7388	8492	8492		
HLEPEPEEEIIAEDYDDDPVDYEATR	26	Unmodified	_HLEPEPEEEIIAEDYDDDPVDYEATR_			0	0	0	O60828	O60828	O60828	PQBP1	Polyglutamine-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1030.45091	3088.33091	1.7132	0.0017654	0.82316	0.00084822	2.5364	0.0026136	1030.78580123021	13.3	0.1153	13.3	13.247	13.363	0	426	46	1.03977710643793	0.0301777503680323	1.03977710643793	627.466837693543	0	18.2111507119096						466	14	5	NaN	NaN	NaN	6.4227E-14	1	38342	89.459	85.218	1	87023			8493	286	7199	7389	8493	8493		
HLESWCVQR	9	Unmodified	_HLESWCVQR_			0	0	0	Q9Y6M9	Q9Y6M9	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.790389	1213.56623	2.0809	0.0012648	3.0725	0.0018674	5.1534	0.0031322	607.792397880021	5.0972	0.21279	5.0972	5.044	5.2568	0	582	22	0.934820374997243	0.0141786956334647	0.934820374997243	378.683128826446	0	5.74359841608515						218	25	3	NaN	NaN	NaN	0.015539	1	9822	33.396	13.162	1	72976			8494	3472	7200	7390	8494	8494		
HLFAILGGSEGK	12	Unmodified	_HLFAILGGSEGK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.837862	1227.66117	1.0858	0.0006676	-3.1006	-0.0019064	-2.0148	-0.0012388	614.837173511557	10.374	0.12412	10.374	10.312	10.436	0	573	25	0.940896116921038	0.0161986138950868	0.940896116921038	381.095146970066	0	6.56099332544869						129	15	2	NaN	NaN	NaN	0.0018256	1	10238	48.785	41.228	1	33101			8495	2420	7201	7391	8495	8495		
HLFLLLK	7	Unmodified	_HLFLLLK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.291831	882.569109	-1.9791	-0.00087534	0.51853	0.00022934	-1.4606	-0.000646	442.292037740418	11.97	0.11526	11.97	11.944	12.059	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	350.536798037555	0	8.28146638126975						148	14	2	NaN	NaN	NaN	0.014591	1	2047	60.001	15.268	1	41985			8496	351	7202	7392	8496	8496		
HLFLTSK	7	Unmodified	_HLFLTSK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.247621	844.480688	-0.70185	-0.00029706	-2.0434	-0.00086485	-2.7452	-0.0011619	423.246648334915	4.7869	0.25714	4.7869	4.6982	4.9553	0	774	31	0.804600385996946	0.0204374693945948	0.804600385996946	327.529496104659	0	8.31950141829958						259	30	3	NaN	NaN	NaN	0.0063365	1	1487	84.699	47.091	1	89338			8497	3044	7203	7393	8497	8497		
HLFTGPVLSK	10	Unmodified	_HLFTGPVLSK_			0	0	0	P16930	P16930	P16930	FAH	Fumarylacetoacetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.818941	1097.62333	0.19902	0.00010943	0.55366	0.00030441	0.75269	0.00041384	549.819456755533	7.589	0.17741	7.589	7.5358	7.7132	0	624	34	0.906433495720521	0.0223240803246195	0.906433495720521	367.619787419809	0	9.05391702979358						271	21	3	NaN	NaN	NaN	0.0043715	1	6653	55.235	43.168	1	81622			8498	731	7204	7394	8498	8498		
HLGGIPWTYAEDAVPTLTPCR	21	Unmodified	_HLGGIPWTYAEDAVPTLTPCR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.391444	2353.1525	1.0391	0.00081613	0.31825	0.00024995	1.3574	0.0010661	785.392454277133	15.837	0.24829	15.837	15.757	16.005	0	432	97	1.035754240522	0.0644103796641726	1.035754240522	625.914289676375	0	38.9236900589161						1152	29	4	NaN	NaN	NaN	0.0008245	1	36080	73.502	71.878	1	215690			8499	927	7205	7395	8499	8499		
HLGISNEMVR	10	Unmodified	_HLGISNEMVR_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.30059	1154.58663	0.90844	0.00052535	1.6066	0.00092911	2.5151	0.0014545	578.301782305006	5.8066	0.13299	5.8066	5.7534	5.8864	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.684457607341	0	8.22180623341103						255	16	3	NaN	NaN	NaN	0.0074796	1	8193	65.404	44.745	1	83154			8500	2516	7206	7396	8500	8500		
HLGTAGTDVDLR	12	Unmodified	_HLGTAGTDVDLR_			0	0	0	Q9Y613	Q9Y613	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.825483	1253.63641	1.3816	0.0008674	0.23517	0.00014764	1.6168	0.001015	627.825850249981	5.2213	0.070924	5.2213	5.1947	5.2657	0	537	25	0.965173861991602	0.0161717265136965	0.965173861991602	390.838376359583	0	6.54859355650404						90	9	2	NaN	NaN	NaN	0.0032447	1	11029	72.922	31.897	1	26589			8501	3449	7207	7397	8501	8501		
HLGVILPAVMLALK	14	Unmodified	_HLGVILPAVMLALK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.310785	1473.91053	-1.2322	-0.00060664	0.83547	0.00041131	-0.39677	-0.00019534	492.31137363316	18.071	0.11526	18.071	18.027	18.142	0	693	19	0.85967808974117	0.0122165429228538	0.85967808974117	521.323867950581	0	7.40832584373993						173	14	3	NaN	NaN	NaN	0.0036854	1	17715	52.591	51.217	1	35477			8502	2420	7208	7398	8502	8502		
HLHDNWILHR	10	Unmodified	_HLHDNWILHR_			0	0	0	P21127;Q9UQ88	P21127	P21127	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.570539	1339.68979	-1.351	-0.00060465	0.046636	2.0873E-05	-1.3043	-0.00058377	447.57035599609	5.443	0.097519	5.443	5.4076	5.5051	0	837	16	0.761618911097395	0.0102479437229266	0.761618911097395	462.28856226393	0	6.22031189195042						96	12	2	NaN	NaN	NaN	0.03672	1	13583	25.254	23.283	1	20904			8503	787	7209	7399	8503	8503		
HLHPIQTSFQEATASK	16	Unmodified	_HLHPIQTSFQEATASK_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.975959	1793.90605	-0.86513	-0.00051819	1.6301	0.00097642	0.76501	0.00045822	599.311214678886	6.5427	0.15075	6.5427	6.4983	6.6491	0	750	28	0.820941264895493	0.0183719873373771	0.820941264895493	497.007380445692	0	11.122614601781						353	18	4	NaN	NaN	NaN	5.6615E-05	1	27076	88.42	66.416	1	82906			8504	2354	7210	7400	8504	8504		
HLHPIQTSFQEATASK	16	Unmodified	_HLHPIQTSFQEATASK_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.9603	1793.90605	2.3765	0.002134	-0.25114	-0.00022551	2.1254	0.0019085	897.959987771429	6.5427	0.12413	6.5427	6.5072	6.6313	0	270	25	1.14398322290989	0.0159743847562432	1.14398322290989	461.72248446732	0	6.44741327475788						189	15	3	NaN	NaN	NaN	0.014287	1	27077	25.705	22.62	1	35246			8505	2354	7210	7400	8505	8505		
HLHSIMVLK	9	Unmodified	_HLHSIMVLK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.879433	1076.61647	-1.0375	-0.00037338	0.22411	8.0654E-05	-0.81341	-0.00029273	359.879628735835	5.7179	0.15071	5.7179	5.7002	5.8509	0	834	28	0.763668499782291	0.0184488704959693	0.763668499782291	464.685345667131	0	11.225970124513						224	18	3	NaN	NaN	NaN	0.014837	1	6133	44.767	39.459	1	56127			8506	74	7211	7401	8506	8506		
HLHYWFVESQK	11	Unmodified	_HLHYWFVESQK_			0	0	0	P10619	P10619	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.913971	1472.72008	-0.37212	-0.00018305	-0.18677	-9.1876E-05	-0.55889	-0.00027493	492.248230657376	8.2632	0.23952	8.2632	8.21	8.4495	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	499.074829140233	0	12.3782274314419						364	28	4	NaN	NaN	NaN	0.0017288	1	17660	58.426	53.597	1	124270			8507	630	7212	7402	8507	8507		
HLHYWFVESQK	11	Unmodified	_HLHYWFVESQK_			0	0	0	P10619	P10619	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.367318	1472.72008	1.7921	0.0013214	1.7592	0.0012972	3.5513	0.0026186	737.368880057022	8.2632	0.16856	8.2632	8.1745	8.343	0	432	28	1.035754240522	0.0181041477634616	1.035754240522	418.73882630529	0	7.31921655653457						233	20	3	NaN	NaN	NaN	0.00038465	1	17663	95.311	82.715	1	63737			8508	630	7212	7402	8508	8508		
HLIEQDFPGMR	11	Unmodified	_HLIEQDFPGMR_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.832254	1341.64996	1.2187	0.00081878	0.42181	0.00028339	1.6405	0.0011022	671.83288634826	8.9642	0.11521	8.9642	8.9021	9.0174	0	513	52	0.981336640919867	0.0343340389599219	0.981336640919867	397.099221968006	0	13.893316105291						331	14	3	NaN	NaN	NaN	0.00042407	1	13660	56.202	48.556	1	94708			8509	2897	7213	7403	8509	8509		
HLILPEK	7	Unmodified	_HLILPEK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.263271	848.511988	0.86076	0.00036605	0.82664	0.00035154	1.6874	0.00071759	425.263539787384	4.6273	0.2128	4.6273	4.5652	4.778	0	669	49	0.875957769340875	0.0325458093400007	0.875957769340875	356.549931570857	0	13.247449248412						399	25	3	NaN	NaN	NaN	0.061438	1	1539	29.31	0	1	132770			8510	350	7214	7404	8510	8510		
HLIPAANTGESK	12	Unmodified	_HLIPAANTGESK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.330402	1236.64625	2.2583	0.0013986	-0.55199	-0.00034186	1.7063	0.0010568	619.330217857504	3.5366	0.10641	3.5366	3.4834	3.5898	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	397.442821314675	0	7.36062936476117						156	13	3	NaN	NaN	NaN	6.9751E-05	1	10527	101.82	94.171	1	31240			8511	1375	7215	7405	8511	8511		
HLIPAANTGESK	12	Unmodified	_HLIPAANTGESK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.330402	1236.64625	2.8313	0.0017535	-0.38823	-0.00024044	2.443	0.001513	619.33022554313	3.5366	0.26611	3.5366	3.4213	3.6874	0	561	64	0.948993180460448	0.0425066621336401	0.948993180460448	384.343670296522	0	17.2152623147098						1166	31	5	NaN	NaN	NaN	2.8083E-07	1	10529	140.05	105.12	1	1266500			8512	1375	7215	7405	8512	8512		
HLIVLINK	8	Unmodified	_HLIVLINK_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.313295	948.612037	-0.14457	-6.8716E-05	0.52662	0.00025031	0.38204	0.00018159	475.313689934587	7.527	0.20392	7.527	7.4826	7.6865	0	714	46	0.845418525735192	0.030573200685858	0.845418525735192	343.541044267227	0	12.4236091006847						529	24	4	NaN	NaN	NaN	1.5889E-06	1	3226	150.06	77.703	1	408910			8513	709;2224	7216	7406	8513	8513		
HLLFQSHMATK	11	Unmodified	_HLLFQSHMATK_			0	0	0	Q9P0V9	Q9P0V9	Q9P0V9	SEPT10	Septin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.232535	1311.67578	-1.5754	-0.0006904	2.5651	0.0011241	0.98966	0.0004337	438.233854697034	5.1061	0.17733	5.1061	5.0529	5.2302	0	807	25	0.782101955086014	0.0163750277383129	0.782101955086014	474.824731624229	0	9.94150200062927						171	21	3	NaN	NaN	NaN	0.032935	1	12712	41.796	35.105	1	37109			8514	3149	7217	7407	8514	8514		
HLLGAEHGDEPR	12	Unmodified	_HLLGAEHGDEPR_			0	0	0	Q9BV38	Q9BV38	Q9BV38	WDR18	WD repeat-containing protein 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.221464	1329.64256	-0.95417	-0.00042386	1.741	0.00077338	0.78681	0.00034952	444.222015696272	2.836	0.17734	2.836	2.7917	2.969	0	783	34	0.798467866007927	0.0224890390033184	0.798467866007927	484.692522365103	0	13.6514811730411						303	21	3	NaN	NaN	NaN	0.00048789	1	13272	70.389	61.915	1	65204			8515	2754	7218	7408	8515	8515		
HLLGVEDLLQK	11	Unmodified	_HLLGVEDLLQK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.86662	1263.71869	2.0158	0.0012757	-0.99143	-0.00062744	1.0243	0.00064827	632.865921151677	12.839	0.16849	12.839	12.786	12.955	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.895509561087	0	8.99793029188714						426	20	4	NaN	NaN	NaN	9.162E-12	1	11337	158.57	125.14	1	216390			8516	1511	7219	7409	8516	8516		
HLLIGLPSGAILSLPK	16	Unmodified	_HLLIGLPSGAILSLPK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.674781	1628.00251	-0.41983	-0.00022825	-1.6616	-0.00090338	-2.0814	-0.0011316	543.674061041092	16.883	0.13306	16.883	16.821	16.954	0	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	559.025813486276	0	9.8267271506478						352	16	4	NaN	NaN	NaN	0.01045	1	22421	65.879	65.555	1	114730			8517	2268	7220	7410	8517	8517		
HLLIGLPSGAILSLPK	16	Unmodified	_HLLIGLPSGAILSLPK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.008533	1628.00251	0.86872	0.00070801	0.99348	0.0008097	1.8622	0.0015177	815.009347842969	16.865	0.11533	16.865	16.821	16.936	0	273	40	1.14198628764525	0.0259637344402126	1.14198628764525	461.276614021526	0	10.4873969499499						305	14	3	NaN	NaN	NaN	2.8545E-06	1	22422	69.641	68.384	1	77631			8518	2268	7220	7410	8518	8518		
HLLIGVSSDR	10	Unmodified	_HLLIGVSSDR_			0	0	0	P36542	P36542	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.809105	1095.60366	1.6358	0.00089775	1.3001	0.00071348	2.9359	0.0016112	548.810067922275	6.1525	0.31925	6.1525	6.0993	6.4185	0	603	46	0.920633820089869	0.0304166222504839	0.920633820089869	373.387504856739	0	12.3362692532517						664	37	4	NaN	NaN	NaN	5.0448E-20	1	6603	232.97	197.33	1	392340			8519	985	7221	7411	8519	8519		
HLLNQAVGEEEVPK	14	Unmodified	_HLLNQAVGEEEVPK_			0	0	0	Q9H0G5	Q9H0G5	Q9H0G5	NSRP1	Nuclear speckle splicing regulatory protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.912287	1561.81002	2.3857	0.0018654	-0.42146	-0.00032954	1.9642	0.0015358	781.912370214714	6.8707	0.062063	6.8707	6.853	6.9151	0	288	37	1.13199748998575	0.0239846644495882	1.13199748998575	457.405364058305	0	9.69146510609158						154	8	3	NaN	NaN	NaN	0.00012116	1	20406	73.891	61.295	1	36450			8520	2845	7222	7412	8520	8520		
HLLNVINENFGTLAFCR	17	Unmodified	_HLLNVINENFGTLAFCR_			0	0	0	P50579	P50579	P50579	METAP2	Methionine aminopeptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.347398	2017.02036	-1.3221	-0.00089026	-2.2509	-0.0015157	-3.5731	-0.0024059	673.680642761981	16.386	0.062085	16.386	16.36	16.422	0	681	19	0.867820189810857	0.0122080642620082	0.867820189810857	524.942868173334	0	7.38463606146297						120	8	4	NaN	NaN	NaN	0.0018999	1	31932	38.14	35.751	1	23156			8521	1168	7223	7413	8521	8521		
HLLPEHIR	8	Unmodified	_HLLPEHIR_			0	0	0	Q99797	Q99797	Q99797	MIPEP	Mitochondrial intermediate peptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	338.866293	1013.57705	-1.0548	-0.00035743	0.54268	0.0001839	-0.51211	-0.00017354	338.86648897106	4.3613	0.10641	4.3613	4.3169	4.4233	0	897	22	0.720567078607086	0.0143891950564781	0.720567078607086	438.802199861304	0	8.76255748072958						102	13	2	NaN	NaN	NaN	0.0039245	1	4602	88.35	81	1	22289			8522	2673	7224	7414	8522	8522		
HLLPVETQR	9	Unmodified	_HLLPVETQR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.811648	1091.60874	0.7051	0.00038555	1.5656	0.00085607	2.2707	0.0012416	546.812328029629	5.31	0.17736	5.31	5.2657	5.443	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	365.998273493226	0	7.41031064085269						320	21	3	NaN	NaN	NaN	0.0017759	1	6506	58.426	36.04	1	135590			8523	1737	7225	7415	8523	8523		
HLLQAPLDDAQEILQAR	17	Unmodified	_HLLQAPLDDAQEILQAR_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.349685	1930.02722	0.55378	0.00035683	-0.422	-0.00027192	0.13178	8.4913E-05	644.349259917462	15.198	0.097533	15.198	15.154	15.251	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	560.741005792304	0	14.7165562880226						305	12	4	NaN	NaN	NaN	3.7442E-10	1	30303	145.08	138.7	1	81669			8524	1851	7226	7416	8524	8524		
HLLQAPLDDAQEILQAR	17	Unmodified	_HLLQAPLDDAQEILQAR_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.020889	1930.02722	1.545	0.0014925	0.70719	0.00068316	2.2521	0.0021756	966.52338163729	15.189	0.10638	15.189	15.145	15.251	0	144	64	1.22760721615852	0.0417001832682602	1.22760721615852	495.205770431108	0	16.8214809351615						535	13	4	NaN	NaN	NaN	0.0033462	1	30304	42.446	40.972	1	165650			8525	1851	7226	7416	8525	8525		
HLLQAPVDDAQEILHSR	17	Unmodified	_HLLQAPVDDAQEILHSR_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.009551	1941.00682	0.89632	0.00058083	0.51999	0.00033696	1.4163	0.00091778	648.34405267573	11.864	0.17739	11.864	11.784	11.961	0	528	37	0.971237000454584	0.0242508800099599	0.971237000454584	587.6565832197	0	14.6732355543022						557	21	5	NaN	NaN	NaN	0.00010085	1	30534	83.474	80.927	1	233450			8526	1850	7227	7417	8526	8526		
HLLSAGDGEVK	11	Unmodified	_HLLSAGDGEVK_			0	0	0	Q86W42	Q86W42	Q86W42	THOC6	THO complex subunit 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.29857	1124.58259	2.538	0.0014296	-3.8886	-0.0021904	-1.3506	-0.00076079	563.296439756721	3.9977	0.19509	3.9977	3.9356	4.1307	0	591	40	0.928742107665821	0.0263501137530128	0.928742107665821	376.555475857541	0	10.6835681738426						254	23	3	NaN	NaN	NaN	0.00060071	1	7392	83.438	65.101	1	60338			8527	2177	7228	7418	8527	8527		
HLLVHAPEDK	10	Unmodified	_HLLVHAPEDK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.880379	1157.61931	-0.41168	-0.00015927	0.71683	0.00027733	0.30514	0.00011805	386.880676657147	3.4567	0.28386	3.4567	3.3769	3.6608	0	873	40	0.737001551771189	0.0266892656682711	0.737001551771189	448.062789481077	0	16.2258366970708						485	33	4	NaN	NaN	NaN	0.061316	1	8293	17.395	10.633	1	157980			8528	1235	7229	7419	8528	8528		
HLLVSNVGGDGEEIER	16	Unmodified	_HLLVSNVGGDGEEIER_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.291835	1722.85368	-0.36118	-0.00020778	1.1495	0.00066128	0.78828	0.00045349	575.292192212751	7.6245	0.079781	7.6245	7.5979	7.6777	0	726	37	0.837263974740672	0.0244636567629751	0.837263974740672	507.049480616533	0	14.8152611719495						215	10	4	NaN	NaN	NaN	0.00011626	1	25130	99.589	91.115	1	50052			8529	352	7230	7420	8529	8529		
HLLVSNVGGDGEEIER	16	Unmodified	_HLLVSNVGGDGEEIER_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.434115	1722.85368	3.0214	0.0026057	-1.3792	-0.0011895	1.6421	0.0014162	862.432986763752	7.6245	0.11534	7.6245	7.589	7.7044	0	315	52	1.11400032671325	0.0340227398849529	1.11400032671325	449.763316224841	0	13.7362440124763						482	14	4	NaN	NaN	NaN	0.0001613	1	25131	71.219	66.125	1	125180			8530	352	7230	7420	8530	8530		
HLMHLELDISDSK	13	Unmodified	_HLMHLELDISDSK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.38759	1536.76063	2.0464	0.0015745	1.9799	0.0015233	4.0263	0.0030978	769.388658854498	9.6204	0.14188	9.6204	9.576	9.7179	0	375	37	1.07392668217569	0.0240707016465822	1.07392668217569	434.002880120837	0	9.72762295092781						209	17	3	NaN	NaN	NaN	0.00031574	1	19632	69.276	65.668	1	37039			8531	728	7231	7421	8531	8531		
HLMLPDFDLLEDIESK	16	Unmodified	_HLMLPDFDLLEDIESK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.988765	1913.94447	-1.3001	-0.00083077	1.7509	0.0011188	0.45074	0.00028802	639.3242544329	19.304	0.070919	19.304	19.277	19.348	0	699	37	0.85560534332665	0.0244398769037869	0.85560534332665	517.744403623311	0	14.7890725448022						279	9	5	NaN	NaN	NaN	8.8272E-05	1	29929	84.309	75.935	1	96297			8532	674	7232	7422	8532	8532		
HLMLPDFDLLEDIESK	16	Unmodified	_HLMLPDFDLLEDIESK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.988765	1913.94447	-0.50652	-0.00032366	1.2103	0.00077335	0.70375	0.00044969	639.324157956197	19.304	0.044346	19.304	19.286	19.33	0	582	31	0.934820374997243	0.0202566836468107	0.934820374997243	565.679051921651	0	12.257736252741						101	6	3	NaN	NaN	NaN	0.00012164	1	29930	82.437	74.063	1	20807			8533	674	7232	7422	8533	8533		
HLMLPDFDLLEDIESK	16	Unmodified	_HLMLPDFDLLEDIESK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.979509	1913.94447	1.0397	0.00099602	1.4705	0.0014087	2.5102	0.0024047	958.48274145834	19.312	0.13311	19.312	19.268	19.401	0	192	88	1.1958073123591	0.0577680774065419	1.1958073123591	482.406905527156	0	23.3045233725536						791	16	5	NaN	NaN	NaN	9.6734E-09	1	29931	126.21	120.82	1	272130			8534	674	7232	7422	8534	8534		
HLMLPDFDLLEDIESK	16	Oxidation (M)	_HLM(Oxidation (M))LPDFDLLEDIESK_	HLM(1)LPDFDLLEDIESK	HLM(100)LPDFDLLEDIESK	0	1	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.320403	1929.93938	-0.94461	-0.00060863	0.7942	0.00051172	-0.15041	-9.6911E-05	644.655190904052	18.754	0.10641	18.754	18.71	18.816	0	699	49	0.85560534332665	0.0326000897704161	0.85560534332665	517.713553468454	0	19.7258098609013						409	13	4	NaN	NaN	NaN	2.6077E-06	1	30290	103.76	89.983	1	110710			8535	674	7232	7423	8535	8535	205	
HLMWDLGK	8	Unmodified	_HLMWDLGK_			0	0	0	Q99643	Q99643	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.257662	998.500772	0.18178	9.0939E-05	-0.31509	-0.00015762	-0.1333	-6.6685E-05	500.257624661376	9.5938	0.22166	9.5938	9.5406	9.7622	0	675	43	0.871889544407995	0.0284815345298798	0.871889544407995	354.044771994331	0	11.5653851607163						481	26	4	NaN	NaN	NaN	0.00060154	1	4248	82.716	60.788	1	195510			8536	2662	7233	7424	8536	8536		
HLNEIDLFHCIDPNDSK	17	Unmodified	_HLNEIDLFHCIDPNDSK_			0	0	0	Q15185	Q15185	Q15185	PTGES3	Prostaglandin E synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.98365	2065.95274	1.5608	0.0016138	-0.32512	-0.00033617	1.2357	0.0012777	1033.98352297488	12.529	0.23054	12.529	12.431	12.662	0	117	109	1.24546401832526	0.0714811984013932	1.24546401832526	502.173009024047	0	28.8213292088042						1751	27	5	NaN	NaN	NaN	6.2278E-10	1	32803	115.79	106.21	1	492880			8537	1823	7234	7425	8537	8537		
HLNEIDLFHCIDPNDSK	17	Unmodified	_HLNEIDLFHCIDPNDSK_			0	0	0	Q15185	Q15185	Q15185	PTGES3	Prostaglandin E synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.658189	2065.95274	1.1833	0.00081605	1.3151	0.00090694	2.4983	0.001723	689.993746157215	12.52	0.39019	12.52	12.405	12.795	0	558	61	0.951016745717027	0.040479730715125	0.951016745717027	575.175245701482	0	24.4821546674739						1977	45	7	NaN	NaN	NaN	4.7772E-26	1	32804	276.15	263.46	1	3051000			8538	1823	7234	7425	8538	8538		
HLNLEYHSSMIADAVK	16	Unmodified	_HLNLEYHSSMIADAVK_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.973449	1826.89852	0.41367	0.00025233	0.1914	0.00011675	0.60507	0.00036908	610.307310026809	9.3987	0.088653	9.3987	9.3632	9.4519	0	576	46	0.938871150116794	0.0303871346419722	0.938871150116794	568.32484905496	0	18.3941786968992						267	11	4	NaN	NaN	NaN	6.0916E-07	1	27895	105.08	93.059	1	76489			8539	239	7235	7426	8539	8539		
HLNQEVAVR	9	Unmodified	_HLNQEVAVR_			0	0	0	Q8N8Q8	Q8N8Q8	Q8N8Q8	COX18	Mitochondrial inner membrane protein COX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.293622	1064.57269	1.3993	0.00074622	5.7922	0.003089	7.1915	0.0038352	533.296743490871	5.7623	0.22165	5.7623	5.7002	5.9219	0	624	37	0.906433495720521	0.024365365507813	0.906433495720521	367.76123120876	0	9.8855976310561						585	26	4	NaN	NaN	NaN	0.011987	1	5836	36.57	6.008	1	293510			8540	2272	7236	7427	8540	8540		
HLPDNECIEK	10	Unmodified	_HLPDNECIEK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.792795	1253.57104	2.2884	0.0014366	-2.078	-0.0013045	0.21042	0.0001321	627.792452617937	3.6076	0.34581	3.6076	3.5189	3.8647	0	606	55	0.918606045818476	0.0364974218210178	0.918606045818476	371.981383504694	0	14.7793077621649						735	40	3	NaN	NaN	NaN	0.012345	1	11016	34.953	30.75	1	231770			8541	1250	7237	7428	8541	8541		
HLPMPFHWK	9	Unmodified	_HLPMPFHWK_			0	0	0	P42226	P42226	P42226	STAT6	Signal transducer and activator of transcription 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.207661	1191.60115	-1.8354	-0.00073086	0.69462	0.0002766	-1.1407	-0.00045425	398.208185601563	9.7622	0.09757	9.7622	9.6913	9.7889	0	864	13	0.743159753061487	0.00820807343791086	0.743159753061487	451.65522240189	0	4.98845533388834						42	12	2	NaN	NaN	NaN	0.057996	1	9208	19.487	14.58	1	7194.2			8542	1045	7238	7429	8542	8542		
HLPNDPMFK	9	Unmodified	_HLPNDPMFK_			0	0	0	O75390	O75390	O75390	CS	Citrate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.773677	1097.5328	1.1527	0.00063371	1.2071	0.00066364	2.3598	0.0012974	549.774458132082	6.2234	0.42564	6.2234	6.1081	6.5338	0	642	64	0.894250814548268	0.0426364482720725	0.894250814548268	362.679258242219	0	17.2919668417739						1438	49	3	NaN	NaN	NaN	0.05985	1	6643	41.025	10.463	1	738490			8543	329	7239	7430	8543	8543		
HLPTLDHPIIPADYVAIK	18	Unmodified	_HLPTLDHPIIPADYVAIK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.06203	2012.1095	1.6132	0.0016246	-0.53096	-0.00053471	1.0823	0.0010899	1007.56283090609	13.416	0.22171	13.416	13.292	13.513	0	159	109	1.21767724410157	0.071491002733417	1.21767724410157	491.057041535823	0	28.8304314371935						1787	26	5	NaN	NaN	NaN	3.2664E-10	1	31839	73.502	69.196	1	487890			8544	922	7240	7431	8544	8544		
HLPTLDHPIIPADYVAIK	18	Unmodified	_HLPTLDHPIIPADYVAIK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.710442	2012.1095	1.2633	0.00084855	0.60714	0.00040782	1.8704	0.0012564	672.045448304337	13.425	0.41679	13.425	13.247	13.664	0	564	118	0.946969335010767	0.0789191887197233	0.946969335010767	572.829579124983	0	47.7388696632823						3201	48	6	NaN	NaN	NaN	6.4356E-08	1	31840	172.09	154.67	1	3283500			8545	922	7240	7431	8545	8545		
HLQDLMEGLTAK	12	Unmodified	_HLQDLMEGLTAK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.571105	1354.69149	-1.5784	-0.00071433	1.1607	0.00052532	-0.41764	-0.00018901	452.57117571867	11.261	0.062084	11.261	11.243	11.305	0	825	16	0.769815552739974	0.01024366127849	0.769815552739974	467.21100659161	0	6.21701039953319						58	8	2	NaN	NaN	NaN	0.01392	1	14040	56.202	28.106	1	10663			8546	651	7241	7432	8546	8546		
HLQDLMEGLTAK	12	Unmodified	_HLQDLMEGLTAK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.353019	1354.69149	1.6814	0.0011406	4.5398	0.0030796	6.2212	0.0042202	678.356777511744	11.27	0.23061	11.27	11.199	11.429	0	483	43	1.00151498427745	0.0282262646321653	1.00151498427745	405.224617539207	0	11.4206751468442						621	27	5	NaN	NaN	NaN	0.00067093	1	14041	77.157	25.626	1	273780			8547	651	7241	7432	8547	8547		
HLQLAIR	7	Unmodified	_HLQLAIR_			0	0	0	Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q93077;Q7L7L0;P04908;Q96KK5;P20671;Q71UI9;P0C0S5;P16104;Q96QV6	Q6FI13;Q71UI9;P16104	Q71UI9	HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AH;HIST1H2AD;H2AFV;H2AFZ;H2AFX;HIST1H2AA	Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-H;Histone H2A type 1-D;Histone H2A.V;Histone H2A.Z;Histone H2AX;Histone H2A type 1-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.766512	849.518471	-0.11322	-4.8206E-05	0.16893	7.1926E-05	0.055711	2.372E-05	425.766726533891	5.576	0.39905	5.576	5.5139	5.913	0	777	64	0.802556497112065	0.042915717750498	0.802556497112065	326.666518388856	0	17.4680887291558						1420	46	5	NaN	NaN	NaN	0.0015951	1	1555	124.86	53.288	1	2803800			8548	616;521;723	7242	7433	8548	8548		
HLQLAIRGDEELDSLIK	17	Unmodified	_HLQLAIRGDEELDSLIK_			0	0	1	Q71UI9;P0C0S5	Q71UI9	Q71UI9	H2AFV;H2AFZ	Histone H2A.V;Histone H2A.Z	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.69334	1949.05819	0.78487	0.00051071	0.12499	8.1332E-05	0.90987	0.00059204	651.027757474359	13.434	0.1862	13.434	13.398	13.584	0	561	46	0.948993180460448	0.0303534869943584	0.948993180460448	574.180919556274	0	18.3651404804657						430	22	4	NaN	NaN	NaN	7.345E-05	1	30705	58.338	48.317	1	87792			8549	616	7243	7434	8549	8549		
HLQTGENHTSVDPR	14	Unmodified	_HLQTGENHTSVDPR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.925487	1589.75463	1.1032	0.00058569	0.51032	0.00027094	1.6135	0.00085664	530.925914573492	2.437	0.11527	2.437	2.4104	2.5256	0	717	34	0.84338031290707	0.0224234600075238	0.84338031290707	511.094292984929	0	13.5887715938231						171	14	3	NaN	NaN	NaN	9.0847E-05	1	21266	76.255	70.759	1	35634			8550	396	7244	7435	8550	8550		
HLQTYGEHYPLDHFDK	16	Unmodified	_HLQTYGEHYPLDHFDK_			0	0	0	P12694	P12694	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	500.737883	1998.92242	-1.3648	-0.00068341	1.6242	0.00081328	0.25936	0.00012987	500.989145633374	6.8707	0.070938	6.8707	6.8441	6.9151	0	777	19	0.802556497112065	0.0122658937874733	0.802556497112065	647.324391987975	0	9.89339973788367						145	9	4	NaN	NaN	NaN	0.031215	1	31610	41.87	33.87	1	37321			8551	670	7245	7436	8551	8551		
HLQTYGEHYPLDHFDK	16	Unmodified	_HLQTYGEHYPLDHFDK_			0	0	0	P12694	P12694	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.314751	1998.92242	1.018	0.0006793	1.4264	0.00095185	2.4444	0.0016312	667.649967867397	6.8707	0.053264	6.8707	6.8441	6.8974	0	594	22	0.926715457081489	0.0141865549073745	0.926715457081489	560.603151657174	0	8.58195180781615						101	7	3	NaN	NaN	NaN	0.048651	1	31611	17.271	16.176	1	17762			8552	670	7245	7436	8552	8552		
HLSDHLSELVEQTLSDLEQSK	21	Unmodified	_HLSDHLSELVEQTLSDLEQSK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.402842	2407.1867	0.9053	0.00072732	-1.3639	-0.0010958	-0.45859	-0.00036843	803.735705408476	19.845	0.088647	19.845	19.827	19.915	0	543	40	0.961130371139249	0.0262954306323098	0.961130371139249	580.742011500813	0	15.8884390060288						295	11	5	NaN	NaN	NaN	4.4174E-11	1	36386	110.06	95.405	1	96845			8553	350	7246	7437	8553	8553		
HLSIILEK	8	Unmodified	_HLSIILEK_			0	0	0	Q14789	Q14789	Q14789	GOLGB1	Golgin subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.794935	951.575317	0.36962	0.00017623	-0.068412	-3.2618E-05	0.30121	0.00014362	476.795075392744	7.1634	0.088653	7.1634	7.128	7.2166	0	639	19	0.896281965493857	0.0121843709142423	0.896281965493857	364.193521663299	0	4.95097427299532						65	11	2	NaN	NaN	NaN	0.016376	1	3281	33.813	17.265	1	10737			8554	1775	7247	7438	8554	8554		
HLSLCHGLSDLAR	13	Unmodified	_HLSLCHGLSDLAR_			0	0	0	Q9P2I0	Q9P2I0	Q9P2I0	CPSF2	Cleavage and polyadenylation specificity factor subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.58927	1477.74598	-0.24934	-0.00012307	0.48797	0.00024086	0.23863	0.00011779	493.589543069648	8.0858	0.11535	8.0858	8.0237	8.139	0	717	28	0.84338031290707	0.0183464663932061	0.84338031290707	511.428282466018	0	11.1253507500736						207	14	4	NaN	NaN	NaN	0.00035292	1	17825	58.889	50.888	1	52056			8555	3160	7248	7439	8555	8555		
HLSPYATLTVGDSSHK	16	Unmodified	_HLSPYATLTVGDSSHK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.933751	1711.85295	2.5827	0.0022132	-1.3504	-0.0011572	1.2323	0.001056	856.932650468378	6.3919	0.070931	6.3919	6.3565	6.4274	0	264	37	1.14797626962532	0.0239582842572883	1.14797626962532	463.504437511142	0	9.67334548825716						204	9	3	NaN	NaN	NaN	0.00054266	1	24819	83.214	77.826	1	41622			8556	2726	7249	7440	8556	8556		
HLSVNDLPVGR	11	Unmodified	_HLSVNDLPVGR_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.833111	1205.65167	2.5672	0.0015501	-1.9221	-0.0011607	0.64504	0.00038949	603.832992788449	7.7044	0.26613	7.7044	7.6334	7.8995	0	579	64	0.936845902828289	0.0425302154964563	0.936845902828289	379.531675762856	0	17.229689438994						922	31	4	NaN	NaN	NaN	0.047198	1	9629	36.211	32.318	1	865130			8557	898	7250	7441	8557	8557		
HLTGEFEK	8	Unmodified	_HLTGEFEK_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.742899	959.471246	1.9138	0.00092003	-0.43267	-0.00020801	1.4811	0.00071203	480.742960192289	3.0222	0.43447	3.0222	2.9779	3.4124	0	687	55	0.863749705078866	0.0366547318720113	0.863749705078866	350.933295967962	0	14.8924691875782						807	50	4	NaN	NaN	NaN	1.8699E-05	1	3425	150.88	112.56	1	474850			8558	1399	7251	7442	8558	8558		
HLTHAQSTLDAK	12	Unmodified	_HLTHAQSTLDAK_			0	0	0	Q15125	Q15125	Q15125	EBP	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.233481	1320.67861	-0.66625	-0.00029397	1.6685	0.0007362	1.0022	0.00044222	441.234345389159	2.1266	0.30148	2.1266	2.1	2.4015	0	756	31	0.816857749704129	0.0204204181290417	0.816857749704129	495.890265434548	0	12.3966340160973						363	35	3	NaN	NaN	NaN	0.0035091	1	13003	70.389	51.133	1	99837			8559	1814	7252	7443	8559	8559		
HLTHAQSTLDAK	12	Unmodified	_HLTHAQSTLDAK_			0	0	0	Q15125	Q15125	Q15125	EBP	3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.346583	1320.67861	1.5188	0.0010045	0.99073	0.00065522	2.5096	0.0016597	661.347313433598	2.1178	0.062056	2.1178	2.1089	2.171	0	546	19	0.959108205975751	0.0121355107414761	0.959108205975751	388.167282465717	0	4.91144606677614						63	8	2	NaN	NaN	NaN	3.2067E-05	1	13004	78.043	49.946	1	10293			8560	1814	7252	7443	8560	8560		
HLVFPLLEFLSVK	13	Unmodified	_HLVFPLLEFLSVK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.641189	1540.90174	-1.311	-0.0006747	1.2893	0.00066353	-0.021708	-1.1172E-05	514.976591495458	20.049	0.044346	20.049	20.022	20.066	0	711	19	0.847456455381371	0.0122267289803111	0.847456455381371	513.7048734485	0	7.41150795847477						66	6	3	NaN	NaN	NaN	0.009846	1	19756	47.561	47.561	1	15600			8561	1304	7253	7444	8561	8561		
HLVFPLLEFLSVK	13	Unmodified	_HLVFPLLEFLSVK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.458145	1540.90174	1.2712	0.00098067	-0.74413	-0.00057407	0.52705	0.0004066	771.958723470544	20.049	0.097567	20.049	19.986	20.084	0	363	37	1.08195024817156	0.0240673839691297	1.08195024817156	437.2349399309	0	9.72604905061013						251	12	4	NaN	NaN	NaN	0.00032145	1	19757	63.212	60.541	1	81994			8562	1304	7253	7444	8562	8562		
HLVGVCYTEDEAK	13	Unmodified	_HLVGVCYTEDEAK_			0	0	0	P08574	P08574	P08574	CYC1	Cytochrome c1, heme protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.856123	1519.69769	2.7085	0.0020608	-1.8935	-0.0014407	0.81506	0.00062014	760.854194696529	5.5317	0.23055	5.5317	5.4608	5.6913	0	414	82	1.04781950764076	0.0543124852047909	1.04781950764076	423.494723293416	0	21.9513482288273						778	27	5	NaN	NaN	NaN	6.323E-08	1	19120	160.98	154.23	1	235100			8563	584	7254	7445	8563	8563		
HLVMGDIPAAVNAFQEAASLLGK	23	Unmodified	_HLVMGDIPAAVNAFQEAASLLGK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	784.75086	2351.23075	0.26724	0.00020972	-1.607	-0.0012611	-1.3397	-0.0010514	785.083862893611	20.04	0.070933	20.04	19.995	20.066	0	558	55	0.951016745717027	0.0364267103222841	0.951016745717027	574.709529430272	0	22.0130482899422						267	9	5	NaN	NaN	NaN	6.6322E-13	1	36052	140.78	127.72	1	100030			8564	1126	7255	7446	8564	8564		
HLVMGDIPAAVNAFQEAASLLGK	23	Oxidation (M)	_HLVM(Oxidation (M))GDIPAAVNAFQEAASLLGK_	HLVM(1)GDIPAAVNAFQEAASLLGK	HLVM(79)GDIPAAVNAFQEAASLLGK	0	1	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.082499	2367.22567	0.53429	0.00042213	0.1934	0.0001528	0.72769	0.00057493	790.417286995874	19.712	0.088666	19.712	19.649	19.738	0	534	25	0.967195187796614	0.0161717265136965	0.967195187796614	584.46313692877	0	9.77235838950094						162	11	4	NaN	NaN	NaN	0.00014571	1	36199	78.673	64.172	1	26219			8565	1126	7255	7447	8565	8565	399	
HLVSPEALDLLDK	13	Unmodified	_HLVSPEALDLLDK_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.401024	1448.78749	2.4978	0.0018119	-2.9684	-0.0021533	-0.4706	-0.00034138	725.398483834936	12.893	0.18622	12.893	12.813	12.999	0	447	55	1.02569221487577	0.0362208047125181	1.02569221487577	414.734682297836	0	14.6457423749068						436	22	3	NaN	NaN	NaN	0.00036296	1	16953	70.195	60.107	1	224500			8566	772	7256	7448	8566	8566		
HLVVPGDTITTDTGFMR	17	Unmodified	_HLVVPGDTITTDTGFMR_			0	0	0	Q13868	Q13868	Q13868	EXOSC2	Exosome complex component RRP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.469643	1858.92473	1.5807	0.0014708	0.3369	0.00031348	1.9176	0.0017843	930.470328389365	12.254	0.15075	12.254	12.192	12.343	0	246	43	1.1599488233373	0.0279282839901285	1.1599488233373	468.040720866133	0	11.2690955913774						443	18	4	NaN	NaN	NaN	0.0026652	1	28676	34.779	30.533	1	93338			8567	1707	7257	7449	8567	8567		
HLVYESDQNK	10	Unmodified	_HLVYESDQNK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.798934	1231.58332	2.469	0.0015229	-1.8234	-0.0011247	0.6456	0.0003982	616.797962912192	2.4813	0.31925	2.4813	2.4459	2.7651	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.441229838401	0	9.02417107786727						456	37	3	NaN	NaN	NaN	1.7796E-06	1	10348	102.55	77.695	1	90118			8568	241	7258	7450	8568	8568		
HLWDYTFGPEK	11	Unmodified	_HLWDYTFGPEK_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.832777	1391.651	1.0646	0.00074186	0.74957	0.00052233	1.8142	0.0012642	696.833031929438	11.571	0.22174	11.571	11.491	11.713	0	486	52	0.999498404980629	0.0342818598335937	0.999498404980629	404.30020398205	0	13.8671186012294						417	26	3	NaN	NaN	NaN	3.6783E-05	1	15188	101.82	74.871	1	349650			8569	1331	7259	7451	8569	8569		
HLYTLDGGDIINALCFSPNR	20	Unmodified	_HLYTLDGGDIINALCFSPNR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.375793	2275.10555	0.54575	0.00041443	-0.64927	-0.00049304	-0.10353	-7.8615E-05	759.709859888178	17.06	0.26599	17.06	16.98	17.246	0	477	223	1.0055473068722	0.149713717431384	1.0055473068722	607.782299638421	0	90.491364101906						2960	31	7	NaN	NaN	NaN	2.5342E-22	1	35419	205.26	203.16	1	1473100			8570	1435	7260	7452	8570	8570		
HMDLCLTVVDR	11	Unmodified	_HMDLCLTVVDR_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.831397	1357.64824	0.81157	0.00055173	-0.19329	-0.00013141	0.61828	0.00042033	679.8323935059	10.241	0.13303	10.241	10.188	10.321	0	510	28	0.983355730988811	0.0181692995022645	0.983355730988811	397.868439287465	0	7.35134866061486						189	16	3	NaN	NaN	NaN	0.017244	1	14126	57.032	39.563	1	49634			8571	1586	7261	7453	8571	8571		
HMFHVAWVDPEDPYK	15	Unmodified	_HMFHVAWVDPEDPYK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.29089	1869.85084	-0.065206	-4.0708E-05	0.054054	3.3745E-05	-0.011152	-6.9622E-06	624.625391520173	11.633	0.11521	11.633	11.58	11.695	0	633	34	0.900343422309015	0.0223333690758126	0.900343422309015	544.908706448309	0	13.5166725853604						288	14	4	NaN	NaN	NaN	0.00092015	1	28924	57.293	55.583	1	65662			8572	1625	7262	7454	8572	8572		
HMGLFDHAAR	10	Oxidation (M)	_HM(Oxidation (M))GLFDHAAR_	HM(1)GLFDHAAR	HM(42)GLFDHAAR	0	1	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.853947	1169.54001	-0.85825	-0.00033545	2.67	0.0010436	1.8117	0.00070812	390.854918593536	3.2705	0.11526	3.2705	3.2351	3.3503	0	858	22	0.747263789720611	0.0143611255785926	0.747263789720611	454.247316976455	0	8.72985263380241						104	14	2	NaN	NaN	NaN	0.021449	1	8595	42.075	30.008	1	19657			8573	1158	7263	7455	8573	8573	419	
HMLPTVLR	8	Unmodified	_HMLPTVLR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.781305	965.548056	0.74457	0.00036021	0.39315	0.0001902	1.1377	0.00055041	483.781570307109	7.0925	0.19514	7.0925	7.0392	7.2343	0	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	369.067045484192	0	9.89441911196514						422	23	4	NaN	NaN	NaN	7.3466E-05	1	3558	140.12	118.19	1	160650			8574	905	7264	7456	8574	8574		
HMMAFIEQEANEK	13	Unmodified	_HMMAFIEQEANEK_			0	0	0	P36543;Q96A05	P36543	P36543	ATP6V1E1;ATP6V1E2	V-type proton ATPase subunit E 1;V-type proton ATPase subunit E 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.357976	1576.7014	1.7425	0.0013754	0.99703	0.00078701	2.7395	0.0021624	789.359003679707	9.0706	0.079815	9.0706	9.0262	9.106	0	372	25	1.07593298845566	0.0160493451484018	1.07593298845566	434.715333198861	0	6.48450832781441						87	10	3	NaN	NaN	NaN	0.002081	1	20865	81.335	78.233	1	14316			8575	986	7265	7457	8575	8575		
HMNLILCDCDEFR	13	Unmodified	_HMNLILCDCDEFR_			0	0	0	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.873467	1721.73238	2.2951	0.0019781	1.1652	0.0010043	3.4604	0.0029824	861.874437795537	11.5	0.18629	11.5	11.456	11.642	0	300	34	1.12400150285141	0.0219995616552313	1.12400150285141	453.803512156492	0	8.88208629589974						451	22	5	NaN	NaN	NaN	0.0036811	1	25092	65.879	64.916	1	115110			8576	701	7266	7458	8576	8576		
HMNLILCDCDEFRK	14	Unmodified	_HMNLILCDCDEFRK_			0	0	1	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.616391	1849.82734	0.53814	0.00033236	1.2249	0.00075649	1.763	0.0010889	617.951858941194	9.2568	0.16851	9.2568	9.2125	9.381	0	639	28	0.896281965493857	0.0182803602689122	0.896281965493857	542.493807826361	0	11.0645785952588						483	20	6	NaN	NaN	NaN	7.4731E-12	1	28478	179.95	168.97	1	196560			8577	701	7267	7459	8577	8577		
HMQLYCDR	8	Unmodified	_HMQLYCDR_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.744593	1121.47463	1.7699	0.00099425	0.075338	4.2321E-05	1.8453	0.0010366	561.744890462583	3.6874	0.19506	3.6874	3.6076	3.8026	0	648	34	0.890187667287968	0.0223550653870297	0.890187667287968	360.935797622549	0	9.0640924974324						437	23	4	NaN	NaN	NaN	0.018128	1	7294	56.014	53.416	1	111080			8578	951	7268	7460	8578	8578		
HMQNSEIIR	9	Unmodified	_HMQNSEIIR_			0	0	0	Q8N3U4	Q8N3U4	Q8N3U4	STAG2	Cohesin subunit SA-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.28494	1126.55533	1.8403	0.0010385	2.2768	0.0012848	4.1172	0.0023233	564.286537359449	3.0045	0.14188	3.0045	2.969	3.1109	0	624	22	0.906433495720521	0.0142082016358767	0.906433495720521	367.502700814078	0	5.76054669156406						112	17	2	NaN	NaN	NaN	0.042433	1	7433	43.734	27.082	1	22376			8579	2249	7269	7461	8579	8579		
HMSEFMECNLNELVK	15	Unmodified	_HMSEFMECNLNELVK_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.920614	1879.82668	2.2966	0.0021609	-1.307	-0.0012298	0.98962	0.00093115	940.918863761029	12.99	0.19508	12.99	12.928	13.123	0	255	61	1.15396378101328	0.0399085295347643	1.15396378101328	465.587404142992	0	16.1018127041555						983	23	6	NaN	NaN	NaN	4.795E-07	1	29147	91.939	87.957	1	339400			8580	841	7270	7462	8580	8580		
HMSEFMECNLNELVK	15	Unmodified	_HMSEFMECNLNELVK_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.616168	1879.82668	1.0027	0.00062932	0.54223	0.00034031	1.5449	0.00096963	627.616213898128	12.99	0.12414	12.99	12.946	13.07	0	555	37	0.953040030838688	0.0242811063417099	0.953040030838688	576.779394232606	0	14.6949145407298						414	15	6	NaN	NaN	NaN	0.0070708	1	29148	61.577	60.839	1	140330			8581	841	7270	7462	8581	8581		
HMVFLGGAVLADIMK	15	Unmodified	_HMVFLGGAVLADIMK_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.622923	1600.84694	-0.59886	-0.00032017	0.51972	0.00027786	-0.079138	-4.2309E-05	534.623349001361	18.009	0.14187	18.009	17.965	18.107	0	648	25	0.890187667287968	0.0162548450794181	0.890187667287968	539.427629986601	0	9.84995959751188						279	17	4	NaN	NaN	NaN	0.00059784	1	21618	79.311	70.837	1	81690			8582	1331	7271	7463	8582	8582		
HMYHSLYLK	9	Unmodified	_HMYHSLYLK_			0	0	0	P84098	P84098	P84098	RPL19	60S ribosomal protein L19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	397.870826	1190.59065	-0.99229	-0.0003948	1.5504	0.00061686	0.55812	0.00022206	397.871594905143	4.6273	0.25714	4.6273	4.5563	4.8135	0	822	58	0.771863999559055	0.0389313520228687	0.771863999559055	469.104768707361	0	23.6607522783622						869	30	5	NaN	NaN	NaN	0.017335	1	9178	63.301	59.099	1	508730			8583	1485	7272	7464	8583	8583		
HMYHSLYLK	9	Unmodified	_HMYHSLYLK_			0	0	0	P84098	P84098	P84098	RPL19	60S ribosomal protein L19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.302601	1190.59065	1.8538	0.0011054	-0.24223	-0.00014444	1.6116	0.00096098	596.302576886076	4.6273	0.1596	4.6273	4.5829	4.7425	0	564	37	0.946969335010767	0.0242911943445451	0.946969335010767	383.687749904692	0	9.84217054974653						377	19	3	NaN	NaN	NaN	3.4551E-05	1	9179	113.7	99.163	1	178090			8584	1485	7272	7464	8584	8584		
HMYVFGDFK	9	Unmodified	_HMYVFGDFK_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.268227	1142.5219	1.2848	0.00073523	2.7412	0.0015687	4.026	0.0023039	572.268980500906	10.081	0.15959	10.081	10.002	10.161	0	576	31	0.938871150116794	0.0202538779292779	0.938871150116794	380.589846348341	0	8.21030690750592						294	19	3	NaN	NaN	NaN	0.00033801	1	7849	105.81	89.351	1	73009			8585	2719	7273	7465	8585	8585		
HNDDEQYAWESSAGGSFTVR	20	Unmodified	_HNDDEQYAWESSAGGSFTVR_			0	0	0	P08238;P07900;Q14568	P08238;P07900	P08238	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1128.48305	2254.95155	2.4098	0.0027194	-1.1899	-0.0013428	1.2199	0.0013766	1128.98299746327	10.445	0.12418	10.445	10.418	10.543	0	150	58	1.22363604450103	0.037749440202328	1.22363604450103	493.09576757249	0	15.212112519609						551	15	4	NaN	NaN	NaN	0.0076801	1	35228	40.372	39.931	1	110440			8586	579;567	7274	7466	8586	8586		
HNDDEQYAWESSAGGSFTVR	20	Unmodified	_HNDDEQYAWESSAGGSFTVR_			0	0	0	P08238;P07900;Q14568	P08238;P07900	P08238	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.657794	2254.95155	1.4473	0.0010894	0.96214	0.00072416	2.4095	0.0018135	752.992002783204	11.358	0.2395	11.358	11.261	11.5	0	435	22	1.03374239103424	0.0140829472194866	1.03374239103424	624.858101548894	0	8.51260791866866						199	28	3	NaN	NaN	NaN	0.029347	1	35229	21.21	21.111	1	46203			8587	579;567	7274	7466	8587	8587		
HNDDEQYAWESSAGGSFTVR	20	Unmodified	_HNDDEQYAWESSAGGSFTVR_			0	0	0	P08238;P07900;Q14568	P08238;P07900	P08238	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.657794	2254.95155	1.415	0.001065	1.2249	0.00092189	2.6398	0.0019869	752.99286219402	10.454	0.15965	10.454	10.41	10.569	0	507	172	0.985374541851584	0.115311736139468	0.985374541851584	595.621568666517	0	69.7015746276448						1389	19	3	NaN	NaN	NaN	6.4407E-06	1	35230	115.24	115.15	1	273610			8588	579;567	7274	7466	8588	8588		
HNDDEQYAWESSAGGSFTVR	20	Unmodified	_HNDDEQYAWESSAGGSFTVR_			0	0	0	P08238;P07900;Q14568	P08238;P07900	P08238	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.657794	2254.95155	2.0079	0.0015112	0.84037	0.00063251	2.8482	0.0021437	752.992570934645	11.03	0.46998	11.03	10.755	11.225	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	626.074188792025	0	12.1600298465487						739	54	5	NaN	NaN	NaN	0.020176	1	35231	38.668	37.398	1	318400			8589	579;567	7274	7466	8589	8589		
HNDDEQYAWESSAGGSFTVR	20	Unmodified	_HNDDEQYAWESSAGGSFTVR_			0	0	0	P08238;P07900;Q14568	P08238;P07900	P08238	HSP90AB1;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.657794	2254.95155	2.3693	0.0017832	1.4989	0.0011282	3.8682	0.0029114	752.993453161344	10.454	0.32811	10.454	10.392	10.72	0	429	76	1.03776581230406	0.0503101641957342	1.03776581230406	627.290105175311	0	30.4105876446838						1527	38	6	NaN	NaN	NaN	1.452E-07	1	35232	173.26	171.16	1	1548000			8590	579;567	7274	7466	8590	8590		
HNDLDDVGK	9	Unmodified	_HNDLDDVGK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.738345	1011.46214	1.4243	0.00072177	0.42934	0.00021756	1.8537	0.00093933	506.738537557651	2.7208	0.13303	2.7208	2.6941	2.8272	0	669	22	0.875957769340875	0.0142377998376291	0.875957769340875	355.634781897853	0	5.78048054048378						128	16	2	NaN	NaN	NaN	0.071673	1	4536	28.096	22.788	1	24122			8591	1136	7275	7467	8591	8591		
HNEETGDNVGPLIIK	15	Unmodified	_HNEETGDNVGPLIIK_			0	0	0	Q9NZ45	Q9NZ45	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.420476	1634.8264	2.4079	0.0019707	0.055741	4.562E-05	2.4637	0.0020163	818.420721662698	8.1745	0.29273	8.1745	8.0858	8.3785	0	396	49	1.05987478976334	0.0321341264646959	1.05987478976334	428.094667241493	0	12.979314451919						891	34	5	NaN	NaN	NaN	6.7154E-13	1	22627	111.38	107.13	1	555360			8592	3127	7276	7468	8592	8592		
HNEFDFISGTR	11	Unmodified	_HNEFDFISGTR_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.809833	1321.60511	1.3012	0.00086116	-0.41384	-0.00027389	0.88737	0.00058727	661.809455523574	9.6736	0.14187	9.6736	9.6292	9.7711	0	567	46	0.944945209309785	0.0303576898931419	0.944945209309785	382.432508203224	0	12.286180589846						500	17	4	NaN	NaN	NaN	1.9453E-07	1	13021	117.45	104.17	1	157040			8593	422	7277	7469	8593	8593		
HNELTGDNVGPLILK	15	Unmodified	_HNELTGDNVGPLILK_			0	0	0	Q8N5K1	Q8N5K1	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.6299	1618.86787	0.52965	0.00028634	-0.79773	-0.00043128	-0.26809	-0.00014494	540.629783923564	10.942	0.21285	10.942	10.809	11.021	0	675	37	0.871889544407995	0.024412742353751	0.871889544407995	528.289120764767	0	14.7919954726339						325	25	3	NaN	NaN	NaN	0.0026439	1	22163	71.896	69.76	1	70296			8594	2257	7278	7470	8594	8594		
HNFTIMTK	8	Unmodified	_HNFTIMTK_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.25512	990.495686	0.76571	0.00037999	-2.3446	-0.0011635	-1.5789	-0.00078353	496.254097307613	4.8223	0.266	4.8223	4.7159	4.9819	0	699	46	0.85560534332665	0.0305604601468165	0.85560534332665	347.470478916622	0	12.4109296487558						448	31	2	NaN	NaN	NaN	0.069338	1	4059	34.781	2.6532	1	137530			8595	3371	7279	7471	8595	8595		
HNIICLQNDHK	11	Unmodified	_HNIICLQNDHK_			0	0	0	O00233	O00233	O00233	PSMD9	26S proteasome non-ATPase regulatory subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.566465	1390.67757	0.021179	9.8392E-06	1.3684	0.00063573	1.3896	0.00064557	464.567262760672	3.8292	0.18616	3.8292	3.7938	3.98	0	804	40	0.78414869089473	0.0266149822136816	0.78414869089473	475.785748616175	0	16.1487602848561						232	22	2	NaN	NaN	NaN	0.00052899	1	15169	78.816	72.553	1	65584			8596	65	7280	7472	8596	8596		
HNIMDFAMPYFIQVMK	16	Unmodified	_HNIMDFAMPYFIQVMK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.320916	1983.94092	0.2784	0.00018439	-0.39359	-0.00026068	-0.11519	-7.6296E-05	662.654928177987	19.933	0.088647	19.933	19.898	19.986	0	534	49	0.967195187796614	0.0323479365760566	0.967195187796614	585.121227092695	0	19.5694360167548						326	11	5	NaN	NaN	NaN	0.0025461	1	31350	88.24	85.155	1	117940			8597	1503	7281	7473	8597	8597		
HNIMDFAMPYFIQVMK	16	Unmodified	_HNIMDFAMPYFIQVMK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.977735	1983.94092	1.1475	0.0011395	2.0088	0.0019947	3.1563	0.0031341	993.481754029862	19.933	0.053219	19.933	19.915	19.969	0	198	43	1.1918274123006	0.0278554821353485	1.1918274123006	480.679235384399	0	11.234472135724						177	7	4	NaN	NaN	NaN	0.00021978	1	31351	50.314	46.007	1	44341			8598	1503	7281	7473	8598	8598		
HNIQALLK	8	Unmodified	_HNIQALLK_			0	0	0	P10644	P10644	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.784902	935.55525	0.20417	9.5711E-05	2.0919	0.00098063	2.296	0.0010763	468.785837137604	5.3632	0.13298	5.3632	5.3278	5.4608	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	354.368308983603	0	8.26853759034498						206	16	2	NaN	NaN	NaN	0.00042831	1	2988	126.2	41.505	1	67153			8599	633	7282	7474	8599	8599		
HNIQDEDTIHIWK	13	Unmodified	_HNIQDEDTIHIWK_			0	0	0	O15031	O15031	O15031	PLXNB2	Plexin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.274116	1647.80052	0.16878	9.2876E-05	0.94556	0.00052032	1.1143	0.00061319	550.274717114605	8.0059	0.079845	8.0059	7.9704	8.0502	0	687	28	0.863749705078866	0.0183184547264154	0.863749705078866	523.279204883485	0	11.09773626268						153	10	3	NaN	NaN	NaN	0.0002795	1	22965	81.799	68.624	1	36155			8600	139	7283	7475	8600	8600		
HNIQFSSFDIFSDEEVR	17	Unmodified	_HNIQFSSFDIFSDEEVR_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.656954	2068.94903	1.1596	0.00080089	-0.25334	-0.00017497	0.90626	0.00062592	690.990706706255	15.508	0.15975	15.508	15.429	15.588	0	519	76	0.97729762293174	0.0505331828608568	0.97729762293174	591.064225930941	0	30.5621909954908						646	19	5	NaN	NaN	NaN	3.9335E-06	1	32857	91.939	89.55	1	167550			8601	377	7284	7476	8601	8601		
HNIVFGDYTWTEFDEPFLTR	20	Unmodified	_HNIVFGDYTWTEFDEPFLTR_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.725368	2486.15428	0.39683	0.00032926	0.087405	7.2522E-05	0.48424	0.00040178	830.059451673016	18.665	0.053206	18.665	18.639	18.692	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	576.970773201769	0	10.9992049492297						91	7	3	NaN	NaN	NaN	0.048421	1	36762	22.456	22.413	1	15910			8602	1860	7285	7477	8602	8602		
HNLEIIK	7	Unmodified	_HNLEIIK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.758352	865.502152	0.73434	0.00031853	0.76773	0.00033301	1.5021	0.00065154	433.758626396976	4.4677	0.16846	4.4677	4.4322	4.6007	0	678	34	0.869855008346864	0.0223830071318586	0.869855008346864	353.955291396552	0	9.10793607631774						395	20	3	NaN	NaN	NaN	0.0041912	1	1794	117.18	58.49	1	190370			8603	1465	7286	7478	8603	8603		
HNLLLHLK	8	Unmodified	_HNLLLHLK_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	329.874788	986.602535	-1.5656	-0.00051646	-0.1747	-5.7628E-05	-1.7403	-0.00057408	329.874746383213	5.6647	0.079874	5.6647	5.6292	5.7091	0	912	16	0.710286213408253	0.0102837354304258	0.710286213408253	432.699543959157	0	6.26475292205095						71	10	2	NaN	NaN	NaN	0.029693	1	3997	42.229	14.524	1	15454			8604	1951	7287	7479	8604	8604		
HNLLLHLK	8	Unmodified	_HNLLLHLK_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.308544	986.602535	1.0467	0.00051737	0.77711	0.00038413	1.8238	0.0009015	494.309045491832	5.6559	0.10646	5.6559	5.6203	5.7268	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	355.75502806307	0	8.26004868025979						183	13	3	NaN	NaN	NaN	0.001484	1	3998	85.813	49.243	1	47274			8605	1951	7287	7479	8605	8605		
HNNDTQHIWESDSNEFSVIADPR	23	Unmodified	_HNNDTQHIWESDSNEFSVIADPR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	904.407538	2710.20078	0.86802	0.00078505	1.2725	0.0011509	2.1406	0.0019359	904.742780258222	11.846	0.08867	11.846	11.802	11.89	0	477	58	1.0055473068722	0.0383097280775055	1.0055473068722	607.190038470342	0	23.1329596391881						422	11	4	NaN	NaN	NaN	0.021995	1	37635	15.309	15.251	1	84809			8606	700	7288	7480	8606	8606		
HNNDTQHIWESDSNEFSVIADPR	23	Unmodified	_HNNDTQHIWESDSNEFSVIADPR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	678.557473	2710.20078	0.64311	0.00043638	2.0384	0.0013832	2.6815	0.0018195	678.810234548144	11.846	0.15077	11.846	11.784	11.935	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	786.84082410214	0	14.6345178193292						365	18	5	NaN	NaN	NaN	0.0001084	1	37636	59.625	58.453	1	93605			8607	700	7288	7480	8607	8607		
HNNLDLVIIR	10	Unmodified	_HNNLDLVIIR_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.851304	1205.68806	1.0759	0.00064967	-0.38177	-0.00023054	0.69411	0.00041914	603.85092579204	10.374	0.14184	10.374	10.312	10.454	0	567	34	0.944945209309785	0.0222653859126632	0.944945209309785	382.812700543539	0	9.02007060927525						316	17	4	NaN	NaN	NaN	0.0015638	1	9631	85.716	73.649	1	108830			8608	239	7289	7481	8608	8608		
HNQLPLVIEFTEQTAPK	17	Unmodified	_HNQLPLVIEFTEQTAPK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.686185	1964.03673	1.1005	0.00072158	-1.6833	-0.0011037	-0.58284	-0.00038216	656.017486769243	14.631	0.40786	14.631	14.347	14.755	0	516	121	0.979317271586824	0.0809483689146412	0.979317271586824	592.496364752719	0	48.9745414546534						1195	47	5	NaN	NaN	NaN	4.7616E-11	1	31004	135.21	128.35	1	450260			8609	554	7290	7482	8609	8609		
HNQLPLVIEFTEQTAPK	17	Unmodified	_HNQLPLVIEFTEQTAPK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.02564	1964.03673	2.0375	0.0020029	-1.3859	-0.0013623	0.65163	0.00064057	983.525867073495	14.586	0.36355	14.586	14.373	14.737	0	186	127	1.1997861197946	0.083543660305345	1.1997861197946	483.923164663545	0	33.696599598485						2465	42	5	NaN	NaN	NaN	7.4242E-05	1	31005	70.552	67.478	1	831760			8610	554	7290	7482	8610	8610		
HNVEVLGILSDDVETDTVAPGENLK	25	Unmodified	_HNVEVLGILSDDVETDTVAPGENLK_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	888.783611	2663.329	2.4235	0.002154	-1.6325	-0.0014509	0.79103	0.00070306	889.116541189839	15.553	0.15961	15.553	15.508	15.668	0	360	169	1.08395544855938	0.11260957537533	1.08395544855938	654.594837267351	0	68.0043139831326						1755	19	5	NaN	NaN	NaN	2.7218E-18	1	37482	180.81	175.48	1	459390			8611	709	7291	7483	8611	8611		
HNVQTLDIISR	11	Unmodified	_HNVQTLDIISR_			0	0	0	Q06203	Q06203	Q06203	PPAT	Amidophosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.356951	1294.69935	1.4777	0.00095808	1.6456	0.0010669	3.1233	0.002025	648.357876753601	7.4738	0.133	7.4738	7.4383	7.5713	0	549	37	0.957085760909907	0.0242710246218105	0.957085760909907	387.429228444056	0	9.82493390543704						320	16	4	NaN	NaN	NaN	2.6113E-05	1	12213	81.335	67.341	1	109980			8612	1557	7292	7484	8612	8612		
HNYLPFIMELLK	12	Unmodified	_HNYLPFIMELLK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.41288	1516.81121	0.19248	0.00014617	1.2512	0.00095017	1.4437	0.0010963	759.412971928068	19.259	0.16846	19.259	19.171	19.339	0	441	49	1.02971785871157	0.0322185054318638	1.02971785871157	416.185759534882	0	13.0219001649799						297	20	3	NaN	NaN	NaN	0.068011	1	19044	37.749	28.488	1	59908			8613	3434	7293	7485	8613	8613		
HPAGQQLDEFLQLAVDK	17	Unmodified	_HPAGQQLDEFLQLAVDK_			0	0	0	Q96T76	Q96T76	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.998652	1907.97413	0.081883	5.2159E-05	-3.1435	-0.0020024	-3.0616	-0.0019502	636.996037114931	15.455	0.09766	15.455	15.411	15.508	1.7764E-15	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	547.285657750799	0	11.0559363925548						200	12	4	NaN	NaN	NaN	0.00024308	1	29785	61.067	52.692	1	35915			8614	2631	7294	7486	8614	8614		
HPAGQQLDEFLQLAVDK	17	Unmodified	_HPAGQQLDEFLQLAVDK_			0	0	0	Q96T76	Q96T76	Q96T76	MMS19	MMS19 nucleotide excision repair protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.99434	1907.97413	1.7618	0.0016825	-2.554	-0.0024391	-0.79221	-0.00075656	954.992598763599	15.446	0.15088	15.446	15.411	15.562	0	222	49	1.17589687683038	0.0318785889633038	1.17589687683038	474.385429908785	0	12.8605989421499						215	18	3	NaN	NaN	NaN	0.070144	1	29787	25.705	20.889	1	56992			8615	2631	7294	7486	8615	8615		
HPDADSLYVEK	11	Unmodified	_HPDADSLYVEK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.306592	1272.59863	2.4678	0.0015728	-4.4764	-0.0028528	-2.0085	-0.0012801	637.303590671556	4.8401	0.32807	4.8401	4.7337	5.0617	0	534	112	0.967195187796614	0.0748409485804465	0.967195187796614	391.593331433579	0	30.301242967339						1161	38	4	NaN	NaN	NaN	0.016063	1	11561	47.561	43.358	1	439090			8616	1251	7295	7487	8616	8616		
HPDADSLYVEK	11	Unmodified	_HPDADSLYVEK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.306592	1272.59863	1.8469	0.001177	1.4903	0.00094976	3.3372	0.0021268	637.307706317272	4.8135	0.044371	4.8135	4.7869	4.8312	0	528	4	0.971237000454584	0.00202048696901891	0.971237000454584	393.229735856086	0	0.818044984649589						17	6	2	NaN	NaN	NaN	2.6723E-11	1	11564	152.17	114.58	1	4759.5			8617	1251	7295	7487	8617	8617		
HPDASVNFSEFSK	13	Unmodified	_HPDASVNFSEFSK_			0	0	0	P09429	P09429	P09429	HMGB1	High mobility group protein B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.896646	1463.66811	0.19191	9.3824E-05	1.0426	0.00050972	1.2345	0.00060354	488.896768898283	8.21	0.1597	8.21	8.1567	8.3164	0	711	52	0.847456455381371	0.0346592613234649	0.847456455381371	513.945854143775	0	21.0193497869626						321	19	3	NaN	NaN	NaN	0.024674	1	17377	51.872	42.895	1	94552			8618	601	7296	7488	8618	8618		
HPDASVNFSEFSK	13	Unmodified	_HPDASVNFSEFSK_			0	0	0	P09429	P09429	P09429	HMGB1	High mobility group protein B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.84133	1463.66811	2.1082	0.001545	-0.09823	-7.1987E-05	2.01	0.001473	732.841553587713	8.2011	0.45246	8.2011	8.0325	8.485	0	456	88	1.01965166402748	0.0584323919922645	1.01965166402748	412.252549020915	0	23.624639074341						1558	52	5	NaN	NaN	NaN	2.964E-54	1	17378	269.28	141.35	1	1194400			8619	601	7296	7488	8619	8619		
HPDEDAVEAEGHEVK	15	Unmodified	_HPDEDAVEAEGHEVK_			0	0	0	Q9NY27	Q9NY27	Q9NY27	PPP4R2	Serine/threonine-protein phosphatase 4 regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.584907	1660.73289	1.0293	0.00057083	2.5776	0.0014295	3.6069	0.0020003	554.585863528446	3.4124	0.088773	3.4124	3.3858	3.4746	0	660	40	0.882057989648486	0.0264269571469923	0.882057989648486	534.336117051396	0	16.0090128235614						162	11	3	NaN	NaN	NaN	0.0027768	1	23353	70.195	64.167	1	41495			8620	3108	7297	7489	8620	8620		
HPDSHQLFIGNLPHEVDK	18	Unmodified	_HPDSHQLFIGNLPHEVDK_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	521.514348	2082.02829	0.92828	0.00048411	0.72359	0.00037736	1.6519	0.00086147	521.765438562825	8.68	0.32842	8.68	8.5825	8.9109	0	669	64	0.875957769340875	0.0427193491843373	0.875957769340875	706.334100018349	0	34.4470180134293						1343	38	6	NaN	NaN	NaN	5.0951E-07	1	33062	146.34	140.14	1	1005800			8621	1649	7298	7490	8621	8621		
HPDSHQLFIGNLPHEVDK	18	Unmodified	_HPDSHQLFIGNLPHEVDK_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.016705	2082.02829	1.673	0.0011628	2.0229	0.0014059	3.6959	0.0025687	695.352563222477	8.68	0.32842	8.68	8.5825	8.9109	0	480	31	1.00353128488872	0.0201616152840689	1.00353128488872	606.904797026463	0	12.1931236384527						653	38	4	NaN	NaN	NaN	0.00079133	1	33064	76.196	68.989	1	232610			8622	1649	7298	7490	8622	8622		
HPDSSVNFAEFSK	13	Unmodified	_HPDSSVNFAEFSK_			0	0	0	P26583	P26583	P26583	HMGB2	High mobility group protein B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.84133	1463.66811	1.7303	0.0012681	-0.79343	-0.00058146	0.9369	0.0006866	732.840888361027	7.9438	0.18635	7.9438	7.9083	8.0947	0	459	22	1.01763759082241	0.0140965660785977	1.01763759082241	411.438247326426	0	5.69934374772083						231	22	2	NaN	NaN	NaN	0.0053961	1	17376	74.524	12.947	1	134960			8623	855	7299	7491	8623	8623		
HPDVEVDGFSELR	13	Unmodified	_HPDVEVDGFSELR_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.359887	1498.70522	2.2138	0.0016611	1.6819	0.001262	3.8957	0.0029232	750.360856647492	9.7268	0.31922	9.7268	9.6647	9.9839	0	402	61	1.05585747106793	0.0401898354964538	1.05585747106793	426.797343129988	0	16.2454833921558						810	37	4	NaN	NaN	NaN	0.06511	1	18491	32.051	22.789	1	276770			8624	611	7300	7492	8624	8624		
HPDYAILAAR	10	Unmodified	_HPDYAILAAR_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.803823	1125.59309	1.4793	0.00083401	-2.0198	-0.0011387	-0.5405	-0.00030474	563.802395511905	6.7023	0.21279	6.7023	6.6491	6.8619	8.8818E-16	609	55	0.916577990479294	0.0364923641742785	0.916577990479294	371.6195255096	0	14.7955495331908						560	25	3	NaN	NaN	NaN	0.062925	1	7411	30.593	20.514	1	185520			8625	828	7301	7493	8625	8625		
HPEAEMAQNSVR	12	Unmodified	_HPEAEMAQNSVR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.819875	1367.6252	1.8216	0.0012475	-1.2832	-0.00087878	0.53836	0.00036868	684.819424041644	2.8449	0.097538	2.8449	2.8183	2.9158	0	552	25	0.955063035883597	0.0161829214477363	0.955063035883597	386.392728131806	0	6.54717325704939						111	12	3	NaN	NaN	NaN	0.047914	1	14416	30.349	18.993	1	17521			8626	706	7302	7494	8626	8626		
HPELFEALGIAQPK	14	Unmodified	_HPELFEALGIAQPK_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.422291	1548.83003	1.8442	0.00143	0.85853	0.00066572	2.7027	0.0020957	775.924109047234	13.416	0.20394	13.416	13.363	13.567	0	372	55	1.07593298845566	0.0360961081802142	1.07593298845566	434.783434760209	0	14.5864008859846						554	24	3	NaN	NaN	NaN	2.2336E-06	1	20012	122.51	103.19	1	128100			8627	1369	7303	7495	8627	8627		
HPELFEALGIAQPK	14	Unmodified	_HPELFEALGIAQPK_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.422291	1548.83003	1.8923	0.0014673	1.4224	0.001103	3.3147	0.0025703	775.423375120641	13.407	0.21285	13.407	13.354	13.567	0	297	55	1.12600091227925	0.0359671056362876	1.12600091227925	455.015829970552	0	14.5342710154707						720	25	3	NaN	NaN	NaN	7.2129E-07	1	20013	125.17	108.18	1	157530			8628	1369	7303	7495	8628	8628		
HPENYDLATLK	11	Unmodified	_HPENYDLATLK_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.830234	1299.64592	1.7899	0.0011649	-1.7273	-0.0011242	0.062584	4.0731E-05	650.828854372825	6.2678	0.41679	6.2678	6.0283	6.4451	0	534	43	0.967195187796614	0.0282966100811786	0.967195187796614	391.505816165945	0	11.4540348880343						508	48	2	NaN	NaN	NaN	0.066224	1	12341	32.549	14.212	1	204540			8629	1459	7304	7496	8629	8629		
HPESNTAGMDIFAK	14	Unmodified	_HPESNTAGMDIFAK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.35629	1516.69803	2.6139	0.0019849	2.6515	0.0020134	5.2654	0.0039983	759.356830653199	7.8108	0.28382	7.8108	7.7309	8.0148	0	417	37	1.04580932352505	0.0241238779184587	1.04580932352505	422.68980007488	0	9.7502641303808						479	33	3	NaN	NaN	NaN	0.0034785	1	19027	72.846	63.332	1	209450			8630	3454	7305	7497	8630	8630		
HPFASVVAQEVFQSGIIPSDTDFR	24	Unmodified	_HPFASVVAQEVFQSGIIPSDTDFR_			0	0	0	Q7Z2K6	Q7Z2K6	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.109882	2646.30782	1.1693	0.0010326	-1.8448	-0.0016291	-0.67543	-0.00059648	883.442473244724	18.426	0.088658	18.426	18.381	18.47	0	474	31	1.00756305028564	0.0201560438819375	1.00756305028564	608.482203189518	0	12.1725325133638						150	11	3	NaN	NaN	NaN	0.040986	1	37420	18.396	17.698	1	25295			8631	2127	7306	7498	8631	8631		
HPFIVNHPK	9	Unmodified	_HPFIVNHPK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	363.538176	1087.5927	0.31447	0.00011432	1.5128	0.00054997	1.8273	0.00066429	363.538881189383	2.703	0.12417	2.703	2.6764	2.8006	0	912	13	0.710286213408253	0.00822756245073286	0.710286213408253	432.147693850667	0	5.00575975146086						81	15	2	NaN	NaN	NaN	0.027222	1	6414	32.128	29.529	1	13909			8632	1273	7307	7499	8632	8632		
HPFIVNHPK	9	Unmodified	_HPFIVNHPK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.803626	1087.5927	1.6901	0.00092078	0.23341	0.00012716	1.9235	0.0010479	544.803744336703	2.703	0.097518	2.703	2.6676	2.7651	0	657	22	0.884090832094921	0.0142298979470937	0.884090832094921	358.599332236692	0	5.77184121402161						78	12	2	NaN	NaN	NaN	0.0091961	1	6415	49.325	39.932	1	14392			8633	1273	7307	7499	8633	8633		
HPGSFDVVHVK	11	Unmodified	_HPGSFDVVHVK_			0	0	0	P62701;P22090	P62701	P62701	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	407.884012	1220.63021	-0.34466	-0.00014058	-0.4793	-0.0001955	-0.82396	-0.00033608	407.884069741724	5.0174	0.47884	5.0174	4.9553	5.4342	0	846	40	0.755468431110051	0.026655799678488	0.755468431110051	459.011025930325	0	16.1956548461436						1166	55	5	NaN	NaN	NaN	0.00052899	1	10036	98.009	90.858	1	823060			8634	1394	7308	7500	8634	8634		
HPGSFDVVHVK	11	Unmodified	_HPGSFDVVHVK_			0	0	0	P62701;P22090	P62701	P62701	RPS4X;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.32238	1220.63021	2.4113	0.0014741	-0.55135	-0.00033705	1.86	0.0011371	611.322062749528	5.0085	0.19504	5.0085	4.9376	5.1327	0	546	49	0.959108205975751	0.0323524136219553	0.959108205975751	388.496534079501	0	13.1046741993508						687	23	4	NaN	NaN	NaN	5.1023E-05	1	10037	95.311	79.729	1	213460			8635	1394	7308	7500	8635	8635		
HPHDIIDDINSGAVECPAS	19	Unmodified	_HPHDIIDDINSGAVECPAS_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.977699	2045.91127	0.90206	0.00061609	-0.44774	-0.0003058	0.45432	0.00031029	683.311965992789	10.809	0.31037	10.809	10.729	11.039	0	702	103	0.853568545818287	0.0691791241524355	0.853568545818287	516.272274940703	0	41.8422913772486						2765	36	6	NaN	NaN	NaN	8.4707E-27	1	32454	289.48	281.11	1	2594900			8636	900	7309	7501	8636	8636		
HPHDIIDDINSGAVECPAS	19	Unmodified	_HPHDIIDDINSGAVECPAS_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.96291	2045.91127	2.4622	0.0025212	-1.2208	-0.0012501	1.2414	0.0012711	1024.46297236118	10.817	0.13301	10.817	10.755	10.888	0	225	94	1.17390432875292	0.0617266512874046	1.17390432875292	473.35098805721	0	24.8899085391358						776	16	4	NaN	NaN	NaN	1.0492E-19	1	32455	160.52	159.05	1	170180			8637	900	7309	7501	8637	8637		
HPIGVLLNAITELQK	15	Unmodified	_HPIGVLLNAITELQK_			0	0	0	Q9Y316	Q9Y316	Q9Y316	MEMO1	Protein MEMO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.32604	1644.95629	-0.70934	-0.00038966	-0.92063	-0.00050573	-1.63	-0.00089539	549.325669706362	17.849	0.21278	17.849	17.734	17.947	0	675	31	0.871889544407995	0.0203467753386566	0.871889544407995	528.218118595486	0	12.3267166785073						403	25	4	NaN	NaN	NaN	0.0021869	1	22897	53.028	40.446	1	100630			8638	3365	7310	7502	8638	8638		
HPNEICVPMSVEFEELLK	18	Unmodified	_HPNEICVPMSVEFEELLK_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.35523	2170.04386	-0.44437	-0.00032188	0.11685	8.4639E-05	-0.32752	-0.00023724	724.689464162441	17.734	0.079799	17.734	17.69	17.77	0	648	22	0.890187667287968	0.0142239758453706	0.890187667287968	538.213519510238	0	8.59991256056014						109	10	3	NaN	NaN	NaN	0.019821	1	34310	33.526	30.442	1	18587			8639	1601	7311	7503	8639	8639		
HPNEICVPMSVEFEELLK	18	Unmodified	_HPNEICVPMSVEFEELLK_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.35523	2170.04386	0.4233	0.00030662	2.6914	0.0019495	3.1147	0.0022561	724.691566656366	17.734	0.079814	17.734	17.699	17.779	0	513	28	0.981336640919867	0.0181718123582917	0.981336640919867	593.32279932598	0	10.9868011930562						149	10	3	NaN	NaN	NaN	0.066021	1	34311	14.5	11.953	1	26154			8640	1601	7311	7503	8640	8640		
HPPAPAEPSSDLASK	15	Unmodified	_HPPAPAEPSSDLASK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.375537	1502.73652	2.9095	0.002189	-2.0598	-0.0015498	0.84963	0.00063924	752.373428069071	4.0066	0.16849	4.0066	3.9622	4.1307	0	465	40	1.01360860968299	0.0261938098951453	1.01360860968299	409.709519788852	0	10.5877684651247						450	20	4	NaN	NaN	NaN	0.0033825	1	18595	64.266	56.708	1	98920			8641	3158	7312	7504	8641	8641		
HPSAVTACNLDLENLITDSNR	21	Unmodified	_HPSAVTACNLDLENLITDSNR_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.713134	2339.11757	0.46524	0.00036322	-0.20603	-0.00016085	0.25921	0.00020237	781.047744405542	14.143	0.053187	14.143	14.125	14.178	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	572.281032656549	0	14.6778406432873						177	7	3	NaN	NaN	NaN	0.019615	1	35958	55.354	51.504	1	34153			8642	3173	7313	7505	8642	8642		
HPSAVTACNLDLENLVTDSNR	21	Unmodified	_HPSAVTACNLDLENLVTDSNR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.041251	2325.10192	0.83118	0.00064503	0.26287	0.000204	1.094	0.00084903	776.376048236932	13.008	0.10641	13.008	12.963	13.07	0	561	85	0.948993180460448	0.0566167596248782	0.948993180460448	573.524502629348	0	34.216366959127						511	13	4	NaN	NaN	NaN	1.8318E-08	1	35858	131.48	121.57	1	109300			8643	3452	7314	7506	8643	8643		
HPSSPECLVSAQK	13	Unmodified	_HPSSPECLVSAQK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.351008	1438.68746	2.6366	0.0018992	-1.9949	-0.001437	0.6417	0.00046225	720.350024684761	4.5031	0.27487	4.5031	4.3347	4.6095	0	519	34	0.97729762293174	0.0222161383936255	0.97729762293174	395.192750847596	0	8.98360605712935						350	32	3	NaN	NaN	NaN	0.0038056	1	16632	72.922	66.231	1	80459			8644	1782	7315	7507	8644	8644		
HPSVESVVQCEIDEDVIQVSK	21	Unmodified	_HPSVESVVQCEIDEDVIQVSK_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1199.08375	2396.15295	0.62657	0.00075131	-0.026066	-3.1255E-05	0.6005	0.00072005	1199.58577337728	15.393	0.0798	15.393	15.358	15.437	0	63	43	1.28111162701928	0.027703142560725	1.28111162701928	516.070673237934	0	11.1596672222729						257	10	4	NaN	NaN	NaN	0.0069031	1	36322	25.511	23.779	1	41224			8645	771	7316	7508	8645	8645		
HPSVESVVQCEIDEDVIQVSK	21	Unmodified	_HPSVESVVQCEIDEDVIQVSK_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	799.724928	2396.15295	1.2777	0.0010218	0.15008	0.00012002	1.4278	0.0011418	800.059329546104	15.384	0.19521	15.384	15.322	15.517	0	447	91	1.02569221487577	0.0604681893723227	1.02569221487577	619.768461816999	0	36.5375462274346						844	23	6	NaN	NaN	NaN	4.163E-11	1	36323	130.12	125.04	1	259020			8646	771	7316	7508	8646	8646		
HPTLLQDPDLR	11	Unmodified	_HPTLLQDPDLR_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.851501	1303.68845	1.5695	0.0010246	1.3685	0.00089345	2.938	0.0019181	652.852226822627	7.6156	0.1508	7.6156	7.5624	7.7132	0	498	55	0.991429299781895	0.0363461485221255	0.991429299781895	401.302312312688	0	14.7118845981232						383	18	3	NaN	NaN	NaN	3.3191E-05	1	12478	94.804	71.751	1	120040			8647	278	7317	7509	8647	8647		
HPVLLLHPLGGWTK	14	Unmodified	_HPVLLLHPLGGWTK_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.308432	1566.90347	-0.070146	-3.6708E-05	-1.6588	-0.00086806	-1.7289	-0.00090477	523.307285901171	11.58	0.19513	11.58	11.509	11.704	0	684	43	0.86578508874114	0.0284933997158956	0.86578508874114	524.737744926891	0	17.2693691617619						572	23	4	NaN	NaN	NaN	0.00013255	1	20570	96.946	92.699	1	263220			8648	422	7318	7510	8648	8648		
HPVSLEQYLMEGSYNK	16	Unmodified	_HPVSLEQYLMEGSYNK_			0	0	0	P48556	P48556	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.304976	1893.8931	0.86629	0.00054776	-1.488	-0.00094087	-0.62171	-0.00039311	632.637954106155	12.706	0.11532	12.706	12.68	12.795	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	553.454958140612	0	9.82053417052794						284	14	4	NaN	NaN	NaN	9.9762E-05	1	29464	97.175	89.599	1	71757			8649	1110	7319	7511	8649	8649		
HPVSLEQYLMEGSYNK	16	Unmodified	_HPVSLEQYLMEGSYNK_			0	0	0	P48556	P48556	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.953826	1893.8931	2.3549	0.0022323	-1.0189	-0.00096588	1.336	0.0012665	948.454645515946	12.724	0.13304	12.724	12.68	12.813	0	252	52	1.15595906938629	0.0339152510524858	1.15595906938629	466.367059582844	0	13.6829722844418						430	16	4	NaN	NaN	NaN	0.0015803	1	29465	46.358	43.643	1	81713			8650	1110	7319	7511	8650	8650		
HPVTGQFLYQDSNWASK	17	Unmodified	_HPVTGQFLYQDSNWASK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.476314	1976.93808	2.1637	0.0021409	-1.4474	-0.0014321	0.71634	0.0007088	989.976806297511	9.975	0.097507	9.975	9.9307	10.028	0	219	28	1.17788915118882	0.0179329343895447	1.17788915118882	475.069459191535	0	7.2327599193523						172	12	4	NaN	NaN	NaN	0.0011865	1	31230	65.173	60.356	1	97446			8651	495	7320	7512	8651	8651		
HPVTGQFLYQDSNWASK	17	Unmodified	_HPVTGQFLYQDSNWASK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.986635	1976.93808	0.88596	0.00058472	1.2311	0.00081248	2.117	0.0013972	660.321714493484	9.975	0.18618	9.975	9.9218	10.108	0	615	82	0.912521036363781	0.0547575420218167	0.912521036363781	552.058732601055	0	33.1273231457451						1062	22	5	NaN	NaN	NaN	3.6158E-10	1	31232	126.17	112.4	1	392830			8652	495	7320	7512	8652	8652		
HPWDDISYVLPEHMSM	16	Unmodified	_HPWDDISYVLPEHMSM_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.958811	1955.8546	-1.6562	-0.0010815	-0.80899	-0.00052824	-2.4652	-0.0016097	653.293102734727	17.034	0.14186	17.034	16.963	17.105	0	714	49	0.845418525735192	0.0326182134266176	0.845418525735192	511.501332095493	0	19.7349113018088						595	17	5	NaN	NaN	NaN	9.6418E-05	1	30809	90.142	88.159	1	161610			8653	1235	7321	7513	8653	8653		
HPWDDISYVLPEHMSM	16	Unmodified	_HPWDDISYVLPEHMSM_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.934579	1955.8546	0.66444	0.00065045	2.0193	0.0019768	2.6837	0.0026272	979.437883130436	17.016	0.13299	17.016	16.963	17.096	0	231	58	1.16991841121525	0.0378480292893026	1.16991841121525	471.890127766637	0	15.2661170264789						627	16	4	NaN	NaN	NaN	0.0036916	1	30810	58.889	55.805	1	158900			8654	1235	7321	7513	8654	8654		
HQAFEAELHANADR	14	Unmodified	_HQAFEAELHANADR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.87931	1607.74407	2.6592	0.0021403	-2.683	-0.0021595	-0.023824	-1.9176E-05	804.876959188165	4.6627	0.070954	4.6627	4.6361	4.7071	0	375	40	1.07392668217569	0.0260855828537037	1.07392668217569	433.831778081277	0	10.5377350051327						165	9	3	NaN	NaN	NaN	0.0043595	1	21841	39.702	32.145	1	29899			8655	1703	7322	7514	8655	8655		
HQAFEAELHANADR	14	Unmodified	_HQAFEAELHANADR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.921965	1607.74407	1.1253	0.00060421	0.85253	0.00045774	1.9779	0.001062	537.256636888221	4.6627	0.19515	4.6627	4.6007	4.7958	0	681	37	0.867820189810857	0.0244195217531761	0.867820189810857	525.854265524277	0	14.7969704170737						355	23	4	NaN	NaN	NaN	0.00013387	1	21843	61.042	54.295	1	130120			8656	1703	7322	7514	8656	8656		
HQAFEAELSANQSR	14	Unmodified	_HQAFEAELSANQSR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.379143	1586.74373	2.2847	0.0018149	0.52328	0.00041568	2.808	0.0022306	794.38006614832	5.4962	0.19502	5.4962	5.4342	5.6292	0	420	40	1.04379886199097	0.0261323987291064	1.04379886199097	421.708761766058	0	10.5578401273672						366	23	3	NaN	NaN	NaN	0.02144	1	21165	39.166	36.495	1	97554			8657	1703	7323	7515	8657	8657		
HQAFEAEVQANSGAIVK	17	Unmodified	_HQAFEAEVQANSGAIVK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.957757	1797.90096	2.4598	0.0022137	-2.7291	-0.002456	-0.26929	-0.00024235	900.456752884813	7.8818	0.09751	7.8818	7.8552	7.9527	0	297	58	1.12600091227925	0.0380097163166782	1.12600091227925	454.456915732759	0	15.3408210035897						282	12	4	NaN	NaN	NaN	2.3078E-06	1	27167	67.927	63.944	1	66315			8658	1703	7324	7516	8658	8658		
HQAFMAELASNK	12	Unmodified	_HQAFMAELASNK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.829711	1345.64487	1.6853	0.0011356	-1.121	-0.00075539	0.56425	0.00038021	673.829808133857	6.8175	0.14185	6.8175	6.7644	6.9062	0	513	37	0.981336640919867	0.024237464198638	0.981336640919867	397.087207873807	0	9.80742650713313						401	17	4	NaN	NaN	NaN	3.1499E-07	1	13771	119.55	73.517	1	132870			8659	1511	7325	7517	8659	8659		
HQALQAEIAGHEPR	14	Unmodified	_HQALQAEIAGHEPR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.602456	1555.78554	1.2774	0.00066375	1.0736	0.00055787	2.3511	0.0012216	519.603028918001	4.7337	0.21283	4.7337	4.6361	4.8489	0	684	31	0.86578508874114	0.0203552522347787	0.86578508874114	524.770537013527	0	12.3377461510941						337	25	2	NaN	NaN	NaN	0.00014217	1	20233	97.594	87.344	1	156650			8660	1703	7326	7518	8660	8660		
HQAQIDHYLGLANK	14	Unmodified	_HQAQIDHYLGLANK_			0	0	0	Q9NQC3	Q9NQC3	Q9NQC3	RTN4	Reticulon-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.614473	1606.82159	0.14284	7.6652E-05	0.66869	0.00035883	0.81153	0.00043548	536.614916615136	7.1191	0.23942	7.1191	7.0747	7.3142	0	726	58	0.837263974740672	0.038736824845677	0.837263974740672	507.341261096719	0	23.4726324803066						873	28	5	NaN	NaN	NaN	7.6119E-12	1	21827	200.76	182.25	1	538460			8661	2999	7327	7519	8661	8661		
HQAQIDHYLGLANK	14	Unmodified	_HQAQIDHYLGLANK_			0	0	0	Q9NQC3	Q9NQC3	Q9NQC3	RTN4	Reticulon-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.418071	1606.82159	2.4491	0.0019701	-0.70344	-0.00056586	1.7457	0.0014043	804.41773873689	7.1191	0.16848	7.1191	7.0747	7.2432	0	366	40	1.07994477139643	0.0260783915787524	1.07994477139643	436.265024151605	0	10.5348814432688						559	20	5	NaN	NaN	NaN	1.0115E-16	1	21828	163.93	151.91	1	241720			8662	2999	7327	7519	8662	8662		
HQDLQFAGLLNPLDSPHHMR	20	Unmodified	_HQDLQFAGLLNPLDSPHHMR_			0	0	0	Q5T280	Q5T280	Q5T280	C9orf114	Putative methyltransferase C9orf114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	582.293193	2325.14367	-0.65499	-0.0003814	-0.016422	-9.5627E-06	-0.67141	-0.00039096	582.544170399458	12.449	0.088662	12.449	12.414	12.502	0	696	28	0.857641857947968	0.0183260879062385	0.857641857947968	691.086531122932	0	14.7671343263013						201	11	4	NaN	NaN	NaN	0.0041308	1	35859	33.5	28.418	1	45711			8663	1990	7328	7520	8663	8663		
HQEYLNSILQHAK	13	Unmodified	_HQEYLNSILQHAK_			0	0	0	P51531;P51532	P51531;P51532	P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.61084	1579.81069	-0.29289	-0.00015453	-0.20931	-0.00011043	-0.50219	-0.00026496	527.610667519373	8.1302	0.13295	8.1302	8.077	8.21	0	726	40	0.837263974740672	0.0265151904858787	0.837263974740672	507.415299135375	0	16.0692609713571						273	16	4	NaN	NaN	NaN	0.0024208	1	20968	85.821	84.939	1	69180			8664	1187;1186	7329	7521	8664	8664		
HQGVMVGMGQK	11	Unmodified	_HQGVMVGMGQK_			0	0	0	P60709;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.289168	1170.56378	2.7253	0.0015978	-0.43091	-0.00025264	2.2944	0.0013452	586.289229817018	3.5455	0.38126	3.5455	3.4834	3.8647	0	612	79	0.914549654013882	0.0527404460650701	0.914549654013882	370.624741570013	0	21.3732672768111						2259	44	6	NaN	NaN	NaN	6.3677E-23	1	8622	242.09	220.81	1	4470100			8665	1310;1436;1444;1955	7330	7522	8665	8665		
HQGVMVGMGQK	11	Oxidation (M)	_HQGVMVGM(Oxidation (M))GQK_	HQGVMVGM(1)GQK	HQGVM(-42)VGM(42)GQK	0	1	0	P60709;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.286625	1186.5587	1.1647	0.00069219	-0.76552	-0.00045494	0.39922	0.00023725	594.286276225502	2.0291	0.31044	2.0291	2.0024	2.3128	0	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	366.455531057262	0	7.40291470220438						387	36	3	NaN	NaN	NaN	0.00089574	1	9049	98.009	93.469	2	67662			8666	1310;1436;1444;1955	7330	7523	8666	8666	465;466	
HQGVMVGMGQK	11	Oxidation (M)	_HQGVM(Oxidation (M))VGMGQK_	HQGVM(1)VGMGQK	HQGVM(58)VGM(-58)GQK	0	1	0	P60709;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.286625	1186.5587	2.6334	0.001565	-1.6007	-0.00095125	1.0328	0.00061377	594.28613180497	2.6853	0.33699	2.6853	2.6409	2.9779	0	609	64	0.916577990479294	0.0425891846229369	0.916577990479294	371.388416363745	0	17.2567200997971						777	39	4	NaN	NaN	NaN	1.6746E-07	1	9050	150.17	134.59	2	305140			8667	1310;1436;1444;1955	7330	7523	8667	8667	465;466	
HQILEQAVEDYAETVHQLSK	20	Unmodified	_HQILEQAVEDYAETVHQLSK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.060639	2337.16009	0.77233	0.00060246	0.99235	0.00077409	1.7647	0.0013766	780.395685671621	15.695	0.18615	15.695	15.633	15.819	0	453	37	1.02166545906632	0.0241605388886725	1.02166545906632	617.42511437703	0	14.6009864132845						622	22	6	NaN	NaN	NaN	1.8449E-47	1	35949	258.07	233.14	1	297210			8668	1511	7331	7524	8668	8668		
HQIVEVAGDDK	11	Unmodified	_HQIVEVAGDDK_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.806759	1209.59897	1.6101	0.00097541	-0.022786	-1.3804E-05	1.5873	0.00096161	605.8067640347	3.6076	0.13297	3.6076	3.581	3.714	0	606	34	0.918606045818476	0.0223117043347298	0.918606045818476	372.128658800676	0	9.03850420692856						291	16	3	NaN	NaN	NaN	0.00074106	1	9716	73.655	54.399	1	71902			8669	1573	7332	7525	8669	8669		
HQLDHVFK	8	Unmodified	_HQLDHVFK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	341.850531	1022.52976	-0.90106	-0.00030803	1.6191	0.0005535	0.71807	0.00024547	341.85108911468	3.3415	0.12412	3.3415	3.306	3.4301	0	906	19	0.714399420407021	0.012337899338106	0.714399420407021	434.995362061582	0	7.51250468064637						148	15	3	NaN	NaN	NaN	0.060024	1	4801	29.102	25.961	1	31418			8670	307	7333	7526	8670	8670		
HQLEEELR	8	Unmodified	_HQLEEELR_			0	0	0	Q9ULW0	Q9ULW0	Q9ULW0	TPX2	Targeting protein for Xklp2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.269813	1052.52507	1.417	0.00074716	2.2667	0.0011952	3.6838	0.0019423	527.270477216665	3.6519	0.17739	3.6519	3.6164	3.7938	0	648	28	0.890187667287968	0.0182879696480781	0.890187667287968	361.222731176897	0	7.42094120904278						178	21	2	NaN	NaN	NaN	0.0115	1	5532	74.486	31.651	1	39037			8671	3281	7334	7527	8671	8671		
HQLGGPMWAEPIHDLDFVGR	20	Unmodified	_HQLGGPMWAEPIHDLDFVGR_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.040745	2274.10041	0.50883	0.00038622	0.52649	0.00039963	1.0353	0.00078585	759.375742247841	15.056	0.11528	15.056	14.994	15.109	0	558	52	0.951016745717027	0.0343910976262953	0.951016745717027	574.823965275094	0	20.7870441784967						370	14	4	NaN	NaN	NaN	0.0011502	1	35405	54.261	53.166	1	73803			8672	3104	7335	7528	8672	8672		
HQLTEVGLLDNPELR	15	Unmodified	_HQLTEVGLLDNPELR_			0	0	0	Q8NEZ5	Q8NEZ5	Q8NEZ5	FBXO22	F-box only protein 22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.462675	1732.9108	1.7401	0.0015094	-3.3187	-0.0028789	-1.5787	-0.0013695	867.459776198487	11.616	0.16856	11.616	11.553	11.722	0	306	43	1.12000185836644	0.0280013716258987	1.12000185836644	452.165418323018	0	11.3046704523416						334	19	3	NaN	NaN	NaN	0.0023419	1	25413	69.201	44.512	1	91942			8673	2314	7336	7529	8673	8673		
HQPTAIIAK	9	Unmodified	_HQPTAIIAK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.790184	977.565815	1.7581	0.0008611	-0.0079682	-3.9027E-06	1.7501	0.0008572	489.790261970263	2.836	0.41675	2.836	2.7917	3.2084	0	672	58	0.873923798053065	0.0386669370964761	0.873923798053065	354.974078191402	0	15.7059006550513						1084	48	4	NaN	NaN	NaN	0.00024145	1	3799	102.55	80.618	1	631840			8674	888	7337	7530	8674	8674		
HQQLLGEVLTQLSSR	15	Unmodified	_HQQLLGEVLTQLSSR_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.316204	1707.92678	-0.18482	-0.0001054	-0.37624	-0.00021458	-0.56106	-0.00031998	570.315537176685	15.065	0.11528	15.065	15.03	15.145	0	651	25	0.888155670855968	0.0162548450794181	0.888155670855968	537.90711913221	0	9.8446670730408						148	14	3	NaN	NaN	NaN	0.00012285	1	24709	76.255	72.272	1	32458			8675	1694	7338	7531	8675	8675		
HQSFVLVGETGSGK	14	Unmodified	_HQSFVLVGETGSGK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.372798	1444.73104	2.1138	0.001529	-3.1618	-0.0022871	-1.048	-0.00075809	723.369289793555	6.5959	0.35468	6.5959	6.3831	6.7377	0	450	103	1.02367897599655	0.0685117005933107	1.02367897599655	413.931630000864	0	27.7031770366415						980	41	5	NaN	NaN	NaN	2.5241E-11	1	16818	128.46	97.543	1	421260			8676	181	7339	7532	8676	8676		
HQTLVLTLPTVAFLEDK	17	Unmodified	_HQTLVLTLPTVAFLEDK_			0	0	0	Q9BYD3	Q9BYD3	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.040758	1924.06696	0.97706	0.00094095	0.47822	0.00046054	1.4553	0.0014015	963.041136830561	17.841	0.097508	17.841	17.787	17.885	0	150	28	1.22363604450103	0.0178739508793972	1.22363604450103	493.614751311177	0	7.21035136054667						167	12	3	NaN	NaN	NaN	1.6803E-06	1	30159	61.23	58.145	1	29899			8677	2799	7340	7533	8677	8677		
HQTLVLTLPTVAFLEDK	17	Unmodified	_HQTLVLTLPTVAFLEDK_			0	0	0	Q9BYD3	Q9BYD3	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.362931	1924.06696	0.59959	0.00038516	0.95536	0.00061369	1.555	0.00099884	642.364174194828	17.832	0.10638	17.832	17.779	17.885	0	501	28	0.98941132619024	0.0181667871674303	0.98941132619024	598.690513144239	0	10.9926810453348						216	13	4	NaN	NaN	NaN	0.0083744	1	30160	46.768	41.38	1	44442			8678	2799	7340	7533	8678	8678		
HQVEQLSSSLK	11	Unmodified	_HQVEQLSSSLK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.335684	1254.65681	2.3954	0.0015051	-1.9188	-0.0012056	0.47664	0.00029949	628.334575607904	4.1751	0.18621	4.1751	4.1396	4.3258	0	534	43	0.967195187796614	0.0283044424712918	0.967195187796614	391.653432963259	0	11.4615252452265						361	22	4	NaN	NaN	NaN	0.0026339	1	11064	87.942	75.115	1	102780			8679	1782	7341	7534	8679	8679		
HQVEYLGLK	9	Unmodified	_HQVEYLGLK_			0	0	0	Q12965;O00160	Q12965	Q12965	MYO1E;MYO1F	Unconventional myosin-Ie;Unconventional myosin-If	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.800749	1085.58694	1.3107	0.00071275	-1.9778	-0.0010755	-0.66707	-0.00036275	543.799547956392	5.9573	0.13307	5.9573	5.913	6.0461	0	618	22	0.910492137470517	0.0142003243693484	0.910492137470517	369.316608590116	0	5.75997904994227						164	16	3	NaN	NaN	NaN	0.0013073	1	6358	69.915	34.983	1	58578			8680	1611	7342	7535	8680	8680		
HQVLFIADEIQTGLAR	16	Unmodified	_HQVLFIADEIQTGLAR_			0	0	0	P04181	P04181	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.994143	1809.97373	1.6599	0.0015039	-6.4195	-0.0058161	-4.7596	-0.0043122	906.487546298288	14.524	0.079787	14.524	14.489	14.568	-1.7764E-15	222	55	1.17589687683038	0.0358880628885423	1.17589687683038	474.57084040425	0	14.4837770225261						236	10	3	NaN	NaN	NaN	0.029241	1	27483	22.395	21.124	1	47540			8681	510	7343	7536	8681	8681		
HQYINEDEYEVNLK	14	Unmodified	_HQYINEDEYEVNLK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.616208	1792.82679	-0.015056	-9.0129E-06	1.022	0.0006118	1.007	0.00060278	598.617113184583	8.414	0.09754	8.414	8.3874	8.485	0	666	25	0.877991458330206	0.0162683841309829	0.877991458330206	531.548684682292	0	9.84911425354426						206	12	4	NaN	NaN	NaN	6.4309E-05	1	27040	112.93	107.23	1	46046			8682	2452	7344	7537	8682	8682		
HQYINEDEYEVNLK	14	Unmodified	_HQYINEDEYEVNLK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.420673	1792.82679	2.3479	0.0021071	-0.86614	-0.00077729	1.4818	0.0013298	897.921195936676	8.4229	0.08868	8.4229	8.3785	8.4672	0	279	46	1.13799159301878	0.0299664000670858	1.13799159301878	459.306328873432	0	12.09477933651						260	11	3	NaN	NaN	NaN	0.0048552	1	27041	51.569	44.822	1	54293			8683	2452	7344	7537	8683	8683		
HRDYETATLSDIK	13	Unmodified	_HRDYETATLSDIK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.886269	1547.75799	1.9593	0.0015182	-1.2814	-0.00099295	0.67785	0.00052525	774.885793912249	5.4608	0.10634	5.4608	5.4254	5.5317	0	408	34	1.0518390438467	0.0221059271192692	1.0518390438467	425.049712523428	0	8.93303782748586						205	13	3	NaN	NaN	NaN	0.0069542	1	19974	73.891	48.278	1	57750			8684	221	7345	7538	8684	8684		
HRDYETATLSDIK	13	Unmodified	_HRDYETATLSDIK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.926605	1547.75799	-0.31783	-0.00016429	1.9829	0.001025	1.665	0.0008607	516.927609129426	5.4519	0.17734	5.4519	5.3544	5.5317	0	741	46	0.827064408645228	0.0306157267397379	0.827064408645228	501.324019981525	0	18.5576831059176						396	21	4	NaN	NaN	NaN	6.4263E-07	1	19975	143.22	124.71	1	119800			8685	221	7345	7538	8685	8685		
HRPDLIDFDK	10	Unmodified	_HRPDLIDFDK_			0	0	1	Q01082;P11277	Q01082	Q01082	SPTBN1;SPTB	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.219172	1254.63569	-0.80635	-0.00033804	-1.7896	-0.00075026	-2.596	-0.0010883	419.218513339224	6.7377	0.25708	6.7377	6.658	6.9151	0	870	25	0.739054571787983	0.0164230162386997	0.739054571787983	448.902334600837	0	9.97535312298243						464	30	3	NaN	NaN	NaN	0.00025088	1	11058	59.645	42.176	1	152970			8686	1511	7346	7539	8686	8686		
HRPEDVVQFLVSK	13	Unmodified	_HRPEDVVQFLVSK_			0	0	1	Q53T59	Q53T59	Q53T59	HS1BP3	HCLS1-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.619335	1552.83618	-1.1598	-0.0006015	-1.3139	-0.0006814	-2.4737	-0.0012829	518.618418882036	11.332	0.1508	11.332	11.261	11.412	0	774	22	0.804600385996946	0.0143072230251827	0.804600385996946	487.693373375422	0	8.67205383221426						133	18	2	NaN	NaN	NaN	0.029278	1	20156	33.751	27.004	1	37771			8687	1954	7347	7540	8687	8687		
HRPELIEYDK	10	Unmodified	_HRPELIEYDK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.894577	1298.6619	-0.97857	-0.0004246	0.87468	0.00037952	-0.10389	-4.5076E-05	433.894868590033	4.1662	0.18622	4.1662	4.1307	4.3169	0	837	34	0.761618911097395	0.0225454788167756	0.761618911097395	462.437426576848	0	13.6890944448191						373	22	4	NaN	NaN	NaN	0.0077325	1	12316	69.276	63.012	1	142620			8688	221	7348	7541	8688	8688		
HSAESQILK	9	Unmodified	_HSAESQILK_			0	0	0	P40261	P40261	P40261	NNMT	Nicotinamide N-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.774731	1011.53491	0.48639	0.00024649	0.86297	0.00043733	1.3494	0.00068382	506.775102788774	2.6055	0.17736	2.6055	2.5789	2.7562	0	726	22	0.837263974740672	0.0142734399244295	0.837263974740672	339.924950971472	0	5.79494462067203						153	21	2	NaN	NaN	NaN	0.010373	1	4548	57.032	12.212	1	31314			8689	1017	7349	7542	8689	8689		
HSATPFLK	8	Unmodified	_HSATPFLK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.750527	899.486502	1.3673	0.0006163	-0.16452	-7.4155E-05	1.2028	0.00054215	450.750485566733	4.2194	0.23941	4.2194	4.1662	4.4056	0	681	49	0.867820189810857	0.0325729325950134	0.867820189810857	352.919031947219	0	13.2465319130448						544	28	3	NaN	NaN	NaN	0.00061059	1	2312	101.41	73.707	1	141550			8690	581	7350	7543	8690	8690		
HSDELTSLLGYFPNK	15	Unmodified	_HSDELTSLLGYFPNK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.289543	1719.8468	0.17871	0.00010263	-1.4378	-0.00082569	-1.2591	-0.00072306	574.288903343382	15.508	0.088695	15.508	15.473	15.562	0	648	25	0.890187667287968	0.0162548450794181	0.890187667287968	539.107746653588	0	9.84411852128426						175	11	3	NaN	NaN	NaN	0.0029038	1	25055	57.888	50.331	1	58782			8691	2436	7351	7544	8691	8691		
HSDELTSLLGYFPNK	15	Unmodified	_HSDELTSLLGYFPNK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.930677	1719.8468	2.5035	0.0021553	0.42165	0.00036301	2.9251	0.0025183	861.432716956075	15.508	0.11527	15.508	15.464	15.579	-1.7764E-15	297	43	1.12600091227925	0.0280013716258987	1.12600091227925	454.61473547557	0	11.305351546202						243	14	2	NaN	NaN	NaN	9.3969E-06	1	25058	85.821	77.015	1	91471			8692	2436	7351	7544	8692	8692		
HSDFFNVK	8	Unmodified	_HSDFFNVK_			0	0	0	Q9Y399	Q9Y399	Q9Y399	MRPS2	28S ribosomal protein S2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.243067	992.47158	0.88273	0.00043893	1.5487	0.00077008	2.4314	0.001209	497.24346185161	6.1081	0.1419	6.1081	6.0727	6.2146	0	663	31	0.880024865079826	0.020329837424522	0.880024865079826	357.377742815331	0	8.25593877954725						262	17	3	NaN	NaN	NaN	0.0028771	1	4105	82.716	57.865	1	70737			8693	3374	7352	7545	8693	8693		
HSDLPPLNPTSWWADLR	17	Unmodified	_HSDLPPLNPTSWWADLR_			0	0	0	Q9H2V7	Q9H2V7	Q9H2V7	SPNS1	Protein spinster homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.002396	2003.98536	-1.2919	-0.00086431	2.0873	0.0013964	0.79537	0.0005321	669.338460357298	18.009	0.11529	18.009	17.947	18.062	0	672	22	0.873923798053065	0.0142377998376291	0.873923798053065	528.6583943038	0	8.6128017309386						120	14	3	NaN	NaN	NaN	0.00021756	1	31705	46.358	45.791	1	19791			8694	2875	7353	7546	8694	8694		
HSDVLFLAVK	10	Unmodified	_HSDVLFLAVK_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.824224	1127.63389	1.2065	0.00068145	-1.0464	-0.00059103	0.16008	9.0419E-05	564.823417942186	10.454	0.18622	10.454	10.365	10.551	0	597	49	0.924688525662974	0.0324466467014676	0.924688525662974	374.899666121728	0	13.154956158268						253	22	2	NaN	NaN	NaN	0.0032887	1	7467	69.716	52.32	1	77830			8695	2490	7354	7547	8695	8695		
HSEAFEALQQK	11	Unmodified	_HSEAFEALQQK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.320034	1286.62551	2.7138	0.0017486	-1.7689	-0.0011397	0.94497	0.00060886	644.31991082467	5.0174	0.22166	5.0174	4.9642	5.1859	0	543	49	0.961130371139249	0.0323568915973725	0.961130371139249	389.092277729733	0	13.0989687038531						632	26	4	NaN	NaN	NaN	1.5001E-11	1	11957	140.05	113.1	1	284000			8696	1567	7355	7548	8696	8696		
HSGNITFDEIVNIAR	15	Unmodified	_HSGNITFDEIVNIAR_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.625037	1684.85328	0.38842	0.00021853	-0.96573	-0.00054335	-0.57732	-0.00032481	562.624575381386	14.107	0.20395	14.107	14.054	14.258	0	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	539.197150523389	0	14.7686279779413						726	24	5	NaN	NaN	NaN	7.4103E-12	1	24050	216.04	198.31	1	457880			8697	900	7356	7549	8697	8697		
HSGNITFDEIVNIAR	15	Unmodified	_HSGNITFDEIVNIAR_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.433918	1684.85328	2.5089	0.0021161	1.0863	0.0009162	3.5951	0.0030323	843.435114208323	14.107	0.23052	14.107	14.036	14.267	0	333	67	1.10198982404297	0.044081013383825	1.10198982404297	444.994301894655	0	17.8003456561676						1115	27	6	NaN	NaN	NaN	4.4527E-17	1	24052	191.95	178.77	1	1049300			8698	900	7356	7549	8698	8698		
HSGPNSADSANDGFVR	16	Unmodified	_HSGPNSADSANDGFVR_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.863857	1629.71316	3.0674	0.0025026	-2.3321	-0.0019027	0.73528	0.00059989	815.862021282396	3.5987	0.19501	3.5987	3.5544	3.7494	0	423	70	1.04178812298108	0.0462789558811585	1.04178812298108	420.800372660451	0	18.6930542319898						640	23	4	NaN	NaN	NaN	0.0016586	1	22456	54.556	49.06	1	153400			8699	1217	7357	7550	8699	8699		
HSLEEDEGSDFITENR	16	Unmodified	_HSLEEDEGSDFITENR_			0	0	0	Q9NUQ3	Q9NUQ3	Q9NUQ3	TXLNG	Gamma-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.411034	1876.80751	2.7207	0.0025559	-0.90829	-0.00085325	1.8124	0.0017026	939.41059101774	7.8552	0.070984	7.8552	7.8108	7.8818	0	324	40	1.1079963157843	0.0260209682813848	1.1079963157843	447.046272183333	0	10.4987504949957						238	9	3	NaN	NaN	NaN	0.070749	1	29070	28.228	27.347	1	51934			8700	3054	7358	7551	8700	8700		
HSLLQTLYK	9	Unmodified	_HSLLQTLYK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.816399	1101.61824	0.4985	0.00027508	-0.22461	-0.00012394	0.27389	0.00015114	551.816146823204	8.5382	0.23072	8.5382	8.4584	8.6891	0	621	31	0.908462957275599	0.020293211090572	0.908462957275599	368.426307989808	0	8.22989289709608						269	27	4	NaN	NaN	NaN	0.00044858	1	6772	99.855	69.262	1	102180			8701	1075	7359	7552	8701	8701		
HSLNSSSASTTEPDFQK	17	Unmodified	_HSLNSSSASTTEPDFQK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.423944	1834.83334	3.5823	0.0032901	-2.458	-0.0022575	1.1243	0.0010326	918.421607197485	4.4322	0.1241	4.4322	4.3968	4.5209	0	315	43	1.11400032671325	0.0280129380012835	1.11400032671325	449.544170802471	0	11.3043530451042						364	15	4	NaN	NaN	NaN	0.0016991	1	28094	39.166	33.138	1	87757			8702	1055	7360	7553	8702	8702		
HSLPDLPYDYGALEPHINAQIMQLHHSK	28	Unmodified	_HSLPDLPYDYGALEPHINAQIMQLHHSK_			0	0	0	P04179	P04179	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	806.904102	3223.5873	2.3879	0.0019268	-0.40543	-0.00032714	1.9825	0.0015996	807.40510674256	13.921	0.15073	13.921	13.85	14.001	0	408	61	1.0518390438467	0.0402120243950188	1.0518390438467	846.167243263621	0	32.3491488811301						962	18	6	NaN	NaN	NaN	6.5427E-10	1	38478	76.494	73.998	1	263320			8703	509	7361	7554	8703	8703		
HSMDLSYALETVLNK	15	Unmodified	_HSMDLSYALETVLNK_			0	0	0	Q9Y312	Q9Y312	Q9Y312	AAR2	Protein AAR2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.290667	1719.85017	-0.78321	-0.00044979	0.52313	0.00030043	-0.26009	-0.00014937	574.29144803981	16.493	0.10641	16.493	16.448	16.555	0	654	22	0.886123392477847	0.0142279235023115	0.886123392477847	536.646358919249	0	8.6165915574652						215	13	4	NaN	NaN	NaN	0.00068988	1	25057	96.946	92.699	1	45848			8704	3362	7362	7555	8704	8704		
HSMNPFCEIAVEEAVR	16	Unmodified	_HSMNPFCEIAVEEAVR_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.294194	1887.86075	0.66897	0.00042164	-0.63996	-0.00040336	0.029008	1.8283E-05	630.294095738456	13.132	0.19508	13.132	13.043	13.238	0	585	31	0.932794566565362	0.0202622968311691	0.932794566565362	564.509271278324	0	12.2623510348105						511	23	5	NaN	NaN	NaN	0.0024778	1	29320	55.782	54.308	1	131560			8705	1003	7363	7556	8705	8705		
HSNLMLEELDK	11	Unmodified	_HSNLMLEELDK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.829377	1327.6442	1.2423	0.00082591	-4.8487	-0.0032236	-3.6065	-0.0023977	664.826312487833	8.9198	0.22182	8.9198	8.8487	9.0706	0	510	55	0.983355730988811	0.0363712953515518	0.983355730988811	397.959068654142	0	14.7192784540887						405	26	2	NaN	NaN	NaN	0.0025679	1	13206	62.705	52.003	1	148940			8706	206	7364	7557	8706	8706		
HSNLVQLLGVIVEEK	15	Unmodified	_HSNLVQLLGVIVEEK_			0	0	0	P41240	P41240	P41240	CSK	Tyrosine-protein kinase CSK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.989317	1676.94612	-0.46592	-0.00026091	0.10396	5.8214E-05	-0.36196	-0.00020269	560.32396092776	17.876	0.10639	17.876	17.832	17.938	0	642	22	0.894250814548268	0.0142200298311674	0.894250814548268	541.679052467523	0	8.61357033138142						155	13	3	NaN	NaN	NaN	0.00014339	1	23832	104.49	97.744	1	37311			8707	1034	7365	7558	8707	8707		
HSQAVEELAEQLEQTK	16	Unmodified	_HSQAVEELAEQLEQTK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.974283	1838.90102	0.66301	0.00040707	-0.27825	-0.00017084	0.38476	0.00023623	614.30799887469	11.793	0.26602	11.793	11.687	11.953	0	576	61	0.938871150116794	0.0405077704306123	0.938871150116794	568.296931196395	0	24.5192768171237						736	31	5	NaN	NaN	NaN	5.0075E-06	1	28190	121.69	97.003	1	250640			8708	972	7366	7559	8708	8708		
HSQAVEELAEQLEQTK	16	Unmodified	_HSQAVEELAEQLEQTK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.457787	1838.90102	1.987	0.0018289	0.63329	0.00058292	2.6203	0.0024118	920.458273875052	11.793	0.20397	11.793	11.74	11.944	0	234	85	1.16792504164217	0.0558642859408027	1.16792504164217	471.297140680921	0	22.5431233095765						1223	24	5	NaN	NaN	NaN	2.3669E-33	1	28191	204.33	181.37	1	481230			8709	972	7366	7559	8709	8709		
HSQDLAFLSMLNDIAAVPATAMPFR	25	Unmodified	_HSQDLAFLSMLNDIAAVPATAMPFR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.124369	2715.35128	0.58928	0.00053396	-2.0873	-0.0018914	-1.4981	-0.0013574	906.456970261804	20.093	0.035451	20.093	20.084	20.119	0	456	64	1.01965166402748	0.0423247851454723	1.01965166402748	615.700868191247	0	25.5571661180294						218	5	6	NaN	NaN	NaN	1.2704E-09	1	37651	82.87	74.054	1	67279			8710	1127	7367	7560	8710	8710		
HSQFIGYPITLFVEK	15	Unmodified	_HSQFIGYPITLFVEK_			0	0	0	P07900;Q58FG0	P07900	P07900	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.654045	1777.94031	0.79214	0.00047026	-0.82716	-0.00049105	-0.03502	-2.079E-05	593.653671204111	16.182	0.60295	16.182	16.014	16.617	0	597	55	0.924688525662974	0.0364923641742785	0.924688525662974	559.855705175065	0	22.0944217553127						1970	69	6	NaN	NaN	NaN	0.002381	1	26628	91.245	81.983	1	2999700			8711	567	7368	7561	8711	8711		
HSQFIGYPITLFVEK	15	Unmodified	_HSQFIGYPITLFVEK_			0	0	0	P07900;Q58FG0	P07900	P07900	HSP90AA1;HSP90AA5P	Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-alpha A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.97743	1777.94031	2.3485	0.0020901	0.76862	0.00068405	3.1171	0.0027741	890.47978935347	16.191	0.55862	16.191	16.014	16.573	0	276	109	1.13998907770044	0.0719639932251086	1.13998907770044	460.142098239345	0	29.0473509685546						3433	64	5	NaN	NaN	NaN	0.00034705	1	26629	77.696	59.598	1	3279700			8712	567	7368	7561	8712	8712		
HSQFLGYPITLYLEK	15	Unmodified	_HSQFLGYPITLYLEK_			0	0	0	Q58FF8	Q58FF8	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.657567	1807.95087	0.51314	0.00030976	0.47913	0.00028923	0.99227	0.00059899	603.992524352608	15.331	0.12411	15.331	15.234	15.358	0	591	40	0.928742107665821	0.0263318671085498	0.928742107665821	562.237798627656	0	15.9406695084336						619	15	6	NaN	NaN	NaN	0.00011243	1	27438	108.91	0	1	814630			8713	1959	7369	7562	8713	8713		
HSQFLGYPITLYLEK	15	Unmodified	_HSQFLGYPITLYLEK_			0	0	0	Q58FF8	Q58FF8	Q58FF8	HSP90AB2P	Putative heat shock protein HSP 90-beta 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.982712	1807.95087	2.3949	0.0021674	1.2696	0.001149	3.6645	0.0033163	905.485528800301	15.402	0.52325	15.402	15.234	15.757	0	255	103	1.15396378101328	0.067909901160663	1.15396378101328	465.722972149953	0	27.4074468604052						4149	60	6	NaN	NaN	NaN	1.8172E-24	1	27440	185.57	0	1	8390600			8714	1959	7369	7562	8714	8714		
HSQYHVDGSLEK	12	Unmodified	_HSQYHVDGSLEK_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.333672	1398.65279	1.8111	0.0012684	-1.006	-0.0007045	0.80517	0.00056389	700.333535832749	2.9424	0.097548	2.9424	2.9158	3.0134	0	516	19	0.979317271586824	0.0121153786694375	0.979317271586824	396.117369460198	0	4.90046695569407						63	12	2	NaN	NaN	NaN	0.072129	1	15397	20.336	17.233	1	10943			8715	2551	7370	7563	8715	8715		
HSQYHVDGSLEK	12	Unmodified	_HSQYHVDGSLEK_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.224874	1398.65279	-0.57173	-0.00026713	1.2977	0.00060633	0.72599	0.0003392	467.225086684096	2.9336	0.19508	2.9336	2.8715	3.0666	0	777	49	0.802556497112065	0.0327045075316305	0.802556497112065	486.927470938726	0	19.8424948249466						289	23	4	NaN	NaN	NaN	0.021032	1	15398	28.328	21.637	1	54794			8716	2551	7370	7563	8716	8716		
HSSVYPTQEELEAVQNMVSHTER	23	Unmodified	_HSSVYPTQEELEAVQNMVSHTER_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	668.565875	2670.23439	0.52218	0.00034911	-0.21869	-0.00014621	0.30349	0.0002029	668.816885673223	14.169	0.12414	14.169	14.09	14.214	0	570	22	0.942920803299286	0.0141708428887385	0.942920803299286	759.221352469098	0	11.4100849890787						230	15	4	NaN	NaN	NaN	0.00010551	1	37511	60.734	60.609	1	46931			8717	1606	7371	7564	8717	8717		
HSSVYPTQEELEAVQNMVSHTER	23	Unmodified	_HSSVYPTQEELEAVQNMVSHTER_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	891.085407	2670.23439	2.4534	0.0021862	0.29497	0.00026284	2.7484	0.002449	891.4201348099	14.143	0.23941	14.143	14.01	14.249	0	342	76	1.09598084995137	0.0500748206757269	1.09598084995137	661.848017753536	0	30.2395072003898						1501	28	5	NaN	NaN	NaN	2.8294E-13	1	37512	118.91	114.86	1	385970			8718	1606	7371	7564	8718	8718		
HSTGIDIGDSLTIPDEFTEDEK	22	Unmodified	_HSTGIDIGDSLTIPDEFTEDEK_			0	0	0	Q6NUK1	Q6NUK1	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	807.043091	2418.10744	0.87901	0.0007094	1.0208	0.00082381	1.8998	0.0015332	807.378762485891	15.136	0.079809	15.136	15.101	15.18	0	576	43	0.938871150116794	0.0283397285014204	0.938871150116794	567.277656407704	0	17.1232173504495						232	10	3	NaN	NaN	NaN	0.039687	1	36434	27.669	24.228	1	43907			8719	2045	7372	7565	8719	8719		
HSTQSLFEYMK	11	Unmodified	_HSTQSLFEYMK_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.824095	1369.63364	0.99588	0.000683	6.3503	0.0043552	7.3462	0.0050382	685.829207107698	9.3278	0.12417	9.3278	9.2745	9.3987	0	465	28	1.01360860968299	0.0181341741775967	1.01360860968299	410.072638279067	0	7.33648922964932						248	15	3	NaN	NaN	NaN	0.0078348	1	14468	37.749	31.883	1	78224			8720	2739	7373	7566	8720	8720		
HSVESMITTLDPGMAPYIK	19	Unmodified	_HSVESMITTLDPGMAPYIK_			0	0	0	Q96M27	Q96M27	Q96M27	PRRC1	Protein PRRC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.348076	2089.0224	0.65327	0.00045556	-0.1267	-8.8356E-05	0.52657	0.0003672	697.34783537155	15.766	0.15076	15.766	15.704	15.854	0	516	55	0.979317271586824	0.0363612334890161	0.979317271586824	592.24779127332	0	21.9896665224229						416	18	4	NaN	NaN	NaN	0.0083129	1	33169	66.619	62.065	1	81333			8721	2583	7374	7567	8721	8721		
HSVESMITTLDPGMAPYIK	19	Unmodified	_HSVESMITTLDPGMAPYIK_			0	0	0	Q96M27	Q96M27	Q96M27	PRRC1	Protein PRRC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.51848	2089.0224	1.6188	0.0016925	-0.11699	-0.00012232	1.5018	0.0015702	1045.51825759641	15.757	0.17734	15.757	15.686	15.863	0	147	67	1.22562176648663	0.043700891154191	1.22562176648663	494.136146525023	0	17.6189674050448						822	21	4	NaN	NaN	NaN	0.00053009	1	33171	35.246	34.627	1	156350			8722	2583	7374	7567	8722	8722		
HTDAAEEVLLEK	12	Unmodified	_HTDAAEEVLLEK_			0	0	0	Q6NVY1	Q6NVY1	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.846081	1353.67761	1.6952	0.0011491	0.41295	0.00027991	2.1082	0.001429	677.846180828363	6.9683	0.16854	6.9683	6.9062	7.0747	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.611706523503	0	8.99146366999099						301	20	4	NaN	NaN	NaN	0.00025978	1	14011	81.799	70.443	1	110340			8723	2048	7375	7568	8723	8723		
HTDDEMTGYVATR	13	Unmodified	_HTDDEMTGYVATR_			0	0	0	Q16539	Q16539	Q16539	MAPK14	Mitogen-activated protein kinase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.32773	1494.64091	2.3135	0.0017313	-0.82425	-0.00061681	1.4893	0.0011145	748.32717875484	5.1061	0.15074	5.1061	5.0706	5.2213	0	459	25	1.01763759082241	0.0161136996889994	1.01763759082241	411.358396627461	0	6.51362108434546						171	18	3	NaN	NaN	NaN	0.052027	1	18363	35.33	34.073	1	33729			8724	1886	7376	7569	8724	8724		
HTDNVIQWLNAMDEIGLPK	19	Unmodified	_HTDNVIQWLNAMDEIGLPK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.036889	2193.08884	-0.064355	-4.711E-05	1.1246	0.00082322	1.0602	0.00077611	732.372207844889	19.419	0.062099	19.419	19.392	19.454	0	606	28	0.918606045818476	0.0182524998058907	0.918606045818476	555.358372495777	0	11.034848542878						184	8	4	NaN	NaN	NaN	4.3719E-05	1	34599	69.201	63.585	1	50759			8725	1095	7377	7570	8725	8725		
HTDVQFYTEVGEITTDLGK	19	Unmodified	_HTDVQFYTEVGEITTDLGK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.02349	2152.03243	1.2052	0.001298	-1.1632	-0.0012528	0.042022	4.5259E-05	1077.52335530599	15.411	0.1154	15.411	15.367	15.482	0	123	52	1.24149774378079	0.0337156554157727	1.24149774378079	500.440107126069	0	13.5905733962203						424	14	4	NaN	NaN	NaN	0.0026803	1	34061	33.456	29.606	1	79905			8726	3430	7378	7571	8726	8726		
HTEMIHNYMEHLER	14	Unmodified	_HTEMIHNYMEHLER_			0	0	0	O60271	O60271	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	460.712082	1838.81922	-2.0914	-0.00096354	2.1247	0.00097889	0.033322	1.5352E-05	460.713136822112	7.1014	0.12415	7.1014	7.0747	7.1989	0	786	22	0.796423123669906	0.0143151894202939	0.796423123669906	642.762117526951	0	11.5532324352765						185	15	3	NaN	NaN	NaN	0.002077	1	28187	43.613	42.806	1	38087			8727	252	7379	7572	8727	8727		
HTEVLPAEEENDSLGADGTHGAGAMESAAGVLIK	34	Unmodified	_HTEVLPAEEENDSLGADGTHGAGAMESAAGVLIK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	844.904496	3375.58888	2.5524	0.0021565	2.0954	0.0017704	4.6478	0.0039269	845.408158439508	12.937	0.088652	12.937	12.91	12.999	0	321	25	1.10999792833052	0.0160095946689738	1.10999792833052	892.781192520374	0	12.8766591860507						182	11	5	NaN	NaN	NaN	0.019692	1	38592	6.8793	6.2374	1	36517			8728	2063	7380	7573	8728	8728		
HTFSGVASVESSSGEAFHVGK	21	Unmodified	_HTFSGVASVESSSGEAFHVGK_			0	0	0	CON__P12763	CON__P12763	CON__P12763			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.339625	2118.99705	1.4875	0.0010522	0.66661	0.00047152	2.1542	0.0015237	707.34045701035	8.7068	0.19532	8.7068	8.6357	8.831	0	507	43	0.985374541851584	0.0282535899920621	0.985374541851584	595.855342110336	0	17.0849274215377						454	23	4	NaN	NaN	NaN	0.00012371	1	33603	69.201	66.486	1	115940		+	8729	29	7381	7574	8729	8729		
HTGCCGDNDPIDVCEIGSK	19	Unmodified	_HTGCCGDNDPIDVCEIGSK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.959322	2132.85614	1.4141	0.0010068	-0.23529	-0.00016752	1.1788	0.00083928	712.293902586239	7.6422	0.23951	7.6422	7.589	7.8285	0	666	61	0.877991458330206	0.0406879164685867	0.877991458330206	530.898421355862	0	24.6029165961519						1062	28	6	NaN	NaN	NaN	1.1969E-10	1	33774	164.3	157.45	1	752940			8730	1822	7382	7575	8730	8730		
HTGCCGDNDPIDVCEIGSK	19	Unmodified	_HTGCCGDNDPIDVCEIGSK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.43535	2132.85614	2.8647	0.0030578	-1.3571	-0.0014486	1.5075	0.0016092	1067.93583829027	7.6334	0.16855	7.6334	7.589	7.7576	0	219	94	1.17788915118882	0.0617860362188953	1.17788915118882	474.82725056134	0	24.9070073115892						1343	20	6	NaN	NaN	NaN	0.0012941	1	33775	49.967	48.493	1	458180			8731	1822	7382	7575	8731	8731		
HTGPNSPDTANDGFVR	16	Unmodified	_HTGPNSPDTANDGFVR_			0	0	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.887332	1683.76011	3.487	0.0029392	-2.1806	-0.001838	1.3064	0.0011011	842.885487338916	4.4322	0.31034	4.4322	4.3701	4.6805	0	396	58	1.05987478976334	0.0381724416536884	1.05987478976334	427.990116153947	0	15.4144884801815						942	36	5	NaN	NaN	NaN	1.0791E-06	1	24002	117.77	112.94	1	425460			8732	931;1278	7383	7576	8732	8732		
HTGPNSPDTANDGFVR	16	Unmodified	_HTGPNSPDTANDGFVR_			0	0	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.260647	1683.76011	1.4625	0.00082229	1.3082	0.00073553	2.7706	0.0015578	562.261586239123	4.4322	0.2128	4.4322	4.379	4.5918	0	708	67	0.849494101904619	0.0448375931863544	0.849494101904619	514.551291403106	0	27.1588012509075						1002	25	5	NaN	NaN	NaN	5.1387E-13	1	24004	202.72	180.68	1	594000			8733	931;1278	7383	7576	8733	8733		
HTGYVIELQHVVK	13	Unmodified	_HTGYVIELQHVVK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.284064	1521.83036	0.27859	0.00014161	-0.086716	-4.4076E-05	0.19188	9.7529E-05	508.283828412813	8.1036	0.20406	8.1036	8.0414	8.2454	0	702	37	0.853568545818287	0.0244432719031649	0.853568545818287	517.467520259194	0	14.8184927393573						381	24	3	NaN	NaN	NaN	0.00023466	1	19185	126.29	113.7	1	245040			8734	1101	7384	7577	8734	8734		
HTGYVIELQHVVK	13	Unmodified	_HTGYVIELQHVVK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.922458	1521.83036	2.7342	0.0020832	-0.6574	-0.00050089	2.0768	0.0015823	761.921894829933	8.1036	0.10652	8.1036	8.0591	8.1656	0	342	34	1.09598084995137	0.0220389790328746	1.09598084995137	442.95437061348	0	8.90732907140108						238	13	3	NaN	NaN	NaN	0.00029434	1	19186	90.689	84.823	1	69513			8735	1101	7384	7577	8735	8735		
HTHVQDGEAGGITQQIGATNVPLEAINEQTK	31	Unmodified	_HTHVQDGEAGGITQQIGATNVPLEAINEQTK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	814.910276	3255.612	2.1126	0.0017216	0.82042	0.00066857	2.933	0.0023901	815.41187617454	11.66	0.26608	11.66	11.562	11.828	0	348	43	1.09197348738011	0.0280631418672823	1.09197348738011	878.416844840746	0	22.5748489503346						671	31	6	NaN	NaN	NaN	3.7453E-07	1	38512	77.679	73.988	1	219220			8736	288	7385	7578	8736	8736		
HTIALWQFLSAHK	13	Unmodified	_HTIALWQFLSAHK_			0	0	0	Q63HN8	Q63HN8	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.952537	1550.83578	-0.56749	-0.00029393	-1.5971	-0.00082721	-2.1646	-0.0011211	518.286469764272	13.93	0.070969	13.93	13.903	13.974	0	717	19	0.84338031290707	0.0122301271639466	0.84338031290707	511.204916933532	0	7.4131457009961						70	9	2	NaN	NaN	NaN	0.05852	1	20096	27.589	25.747	1	16296			8737	2015	7386	7579	8737	8737		
HTLADNFNPVSEER	14	Unmodified	_HTLADNFNPVSEER_			0	0	0	P20645	P20645	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.593626	1627.75905	-1.4016	-0.00076189	-0.56234	-0.00030569	-1.9639	-0.0010676	543.593389109383	8.4051	0.12413	8.4051	8.3697	8.4938	0	804	31	0.78414869089473	0.0204630863651483	0.78414869089473	475.103813212473	0	12.3982740455576						233	15	3	NaN	NaN	NaN	0.00015885	1	22395	94.791	84.541	1	59122			8738	782	7387	7580	8738	8738		
HTLADNFNPVSEER	14	Unmodified	_HTLADNFNPVSEER_			0	0	0	P20645	P20645	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.8868	1627.75905	2.2769	0.0018554	0.35634	0.00029037	2.6333	0.0021458	814.887868409944	8.3963	0.16854	8.3963	8.343	8.5116	0	411	58	1.04982941439551	0.0381671761516003	1.04982941439551	424.05270233694	0	15.4166895742537						482	20	4	NaN	NaN	NaN	0.0011902	1	22397	35.845	31.863	1	113860			8739	782	7387	7580	8739	8739		
HTLDQYVESDYTLLYLHHGLTSDNK	25	Unmodified	_HTLDQYVESDYTLLYLHHGLTSDNK_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	741.360893	2961.41447	0.82259	0.00060984	2.7208	0.0020171	3.5434	0.0026269	741.61224993724	13.77	0.14186	13.77	13.726	13.868	0	501	25	0.98941132619024	0.0161471385123466	0.98941132619024	796.24903613687	0	12.9947405457054						353	17	5	NaN	NaN	NaN	2.1423E-10	1	38160	101.62	99.437	1	108660			8740	1573	7388	7581	8740	8740		
HTLGEVWVQK	10	Unmodified	_HTLGEVWVQK_			0	0	0	Q96D46	Q96D46	Q96D46	NMD3	60S ribosomal export protein NMD3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.824755	1195.63496	1.1559	0.00069219	0.13036	7.8061E-05	1.2863	0.00077025	598.824825602766	6.8974	0.097535	6.8974	6.853	6.9505	0	582	25	0.934820374997243	0.0162053462177963	0.934820374997243	378.746993847851	0	6.56567435671485						158	12	3	NaN	NaN	NaN	0.0010282	1	9319	86.205	71.443	1	60413			8741	2501	7389	7582	8741	8741		
HTLGHLLSLDSYR	13	Unmodified	_HTLGHLLSLDSYR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.603685	1510.78923	-0.066341	-3.3476E-05	1.2234	0.00061733	1.157	0.00058385	504.604371444871	9.9218	0.088602	9.9218	9.8776	9.9662	0	675	28	0.871889544407995	0.0183082845696197	0.871889544407995	528.609211342135	0	11.0999471543672						135	11	2	NaN	NaN	NaN	0.0039978	1	18839	48.785	33.17	1	45896			8742	1531	7390	7583	8742	8742		
HTLLHFLEDEK	11	Unmodified	_HTLLHFLEDEK_			0	0	0	Q9UGP8	Q9UGP8	Q9UGP8	SEC63	Translocation protein SEC63 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.241865	1380.70376	-0.48102	-0.00022187	0.062003	2.8599E-05	-0.41901	-0.00019327	461.241946868109	9.78	0.15073	9.78	9.7356	9.8864	0	747	31	0.822982596624503	0.0204090624710167	0.822982596624503	499.38386089477	0	12.384170036914						238	18	4	NaN	NaN	NaN	0.00040629	1	14857	83.358	54.256	1	58134			8743	3205	7391	7584	8743	8743		
HTLNPEETSSVVR	13	Unmodified	_HTLNPEETSSVVR_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.873162	1467.73177	2.1875	0.0016075	-2.0338	-0.0014946	0.15369	0.00011294	734.871708965691	4.8755	0.15952	4.8755	4.7958	4.9553	0	462	31	1.01562323939346	0.0201476911078267	1.01562323939346	410.613188912139	0	8.14564631264449						275	19	3	NaN	NaN	NaN	0.048634	1	17519	40.861	31.118	1	66764			8744	1979	7392	7585	8744	8744		
HTLNQIDSVK	10	Unmodified	_HTLNQIDSVK_			0	0	0	CON__P12763	CON__P12763	CON__P12763			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.811845	1153.60914	2.7073	0.0015643	-1.1343	-0.00065539	1.573	0.0009089	577.811226387933	3.7849	0.27487	3.7849	3.7494	4.0243	4.4409E-16	579	46	0.936845902828289	0.0303829256271585	0.936845902828289	379.725363460535	0	12.3149041287762						429	32	4	NaN	NaN	NaN	3.9356E-09	1	8166	138.23	104.84	1	153480		+	8745	29	7393	7586	8745	8745		
HTLSYVDVGTGK	12	Unmodified	_HTLSYVDVGTGK_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.830234	1275.64592	2.34	0.0014949	0.41969	0.00026811	2.7597	0.001763	638.830697900191	5.7357	0.2217	5.7357	5.6825	5.9041	0	522	43	0.975277694896658	0.0282809550509913	0.975277694896658	394.855590502552	0	11.449962677367						550	26	4	NaN	NaN	NaN	8.6101E-32	1	11651	241.63	176.22	1	338330			8746	919	7394	7587	8746	8746		
HTMMFSATFPK	11	Unmodified	_HTMMFSATFPK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.307026	1296.5995	1.9321	0.0012545	0.9206	0.00059775	2.8527	0.0018523	649.30758023621	9.709	0.10641	9.709	9.6647	9.7711	0	459	64	1.01763759082241	0.0423306339100051	1.01763759082241	411.93429691328	0	17.1352159893379						506	13	4	NaN	NaN	NaN	2.494E-11	1	12247	126.29	114.23	1	130910			8747	93	7395	7588	8747	8747		
HTNYTMEHIR	10	Unmodified	_HTNYTMEHIR_			0	0	0	O43707;P12814;P35609	O43707;P12814	O43707	ACTN4;ACTN1;ACTN2	Alpha-actinin-4;Alpha-actinin-1;Alpha-actinin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	434.540028	1300.59825	-0.48133	-0.00020916	0.80492	0.00034977	0.32359	0.00014061	434.54041008756	3.0134	0.24828	3.0134	2.9868	3.2351	0	831	34	0.76571780291124	0.0225423377004501	0.76571780291124	464.918904924152	0	13.6869730836577						518	29	4	NaN	NaN	NaN	6.0536E-05	1	12359	109.88	90.39	1	168820			8748	221;671	7396	7589	8748	8748		
HTQENCETWGVNGETGTLVDMK	22	Unmodified	_HTQENCETWGVNGETGTLVDMK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.037289	2505.09004	1.6542	0.001383	0.77708	0.00064967	2.4313	0.0020327	836.372319834849	10.658	0.079799	10.658	10.622	10.702	0	549	118	0.957085760909907	0.0787446557670313	0.957085760909907	578.168445042624	0	47.5690654272798						579	10	4	NaN	NaN	NaN	2.8413E-08	1	36850	110.48	104.65	1	90939			8749	1129	7397	7590	8749	8749		
HTQLEQMFR	9	Unmodified	_HTQLEQMFR_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.292765	1188.57098	1.3336	0.00079387	-0.46168	-0.00027483	0.8719	0.00051904	595.29182231011	7.2787	0.16846	7.2787	7.2255	7.394	0	612	43	0.914549654013882	0.0283947491785544	0.914549654013882	370.559338526376	0	11.5050499741021						321	20	3	NaN	NaN	NaN	0.00095603	1	9115	108.3	69.981	1	241050			8750	3376	7398	7591	8750	8750		
HTTSIFDDFAHYEK	14	Unmodified	_HTTSIFDDFAHYEK_			0	0	0	Q7Z739;Q9BYJ9	Q7Z739	Q7Z739	YTHDF3;YTHDF1	YTH domain-containing family protein 3;YTH domain-containing family protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.930126	1709.76855	0.76945	0.0004393	0.53412	0.00030494	1.3036	0.00074425	571.264927282306	11.341	0.15081	11.341	11.296	11.447	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	544.054039344439	0	9.83912089367402						301	18	4	NaN	NaN	NaN	1.3976E-05	1	24735	92.707	84.333	1	85328			8751	2150	7399	7592	8751	8751		
HTVDDGLDIR	10	Unmodified	_HTVDDGLDIR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.785827	1139.5571	1.7313	0.00098818	-0.017525	-1.0003E-05	1.7137	0.00097817	570.785792930341	5.5051	0.19509	5.5051	5.4608	5.6559	0	558	37	0.951016745717027	0.0242811063417099	0.951016745717027	385.525274543046	0	9.84312866282789						437	23	4	NaN	NaN	NaN	7.6719E-08	1	7774	138.26	115.87	1	230260			8752	2175	7400	7593	8752	8752		
HTVDDGLDIRK	11	Unmodified	_HTVDDGLDIRK_			0	0	1	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.557964	1267.65206	0.17888	7.5765E-05	-0.5028	-0.00021296	-0.32392	-0.0001372	423.558054565389	3.8558	0.10639	3.8558	3.8292	3.9356	0	834	22	0.763668499782291	0.0143451227380655	0.763668499782291	463.801078896414	0	8.71226638877084						149	13	3	NaN	NaN	NaN	0.025406	1	11441	69.716	48.441	1	33060			8753	2175	7401	7594	8753	8753		
HTVTMIPGDGIGPELMLHVK	20	Unmodified	_HTVTMIPGDGIGPELMLHVK_			0	0	0	P51553	P51553	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.711349	2144.11222	1.2098	0.00086586	1.0007	0.00071619	2.2105	0.0015821	716.046508868815	14.019	0.21279	14.019	13.903	14.116	0	480	46	1.00353128488872	0.0302445172563094	1.00353128488872	606.788467561537	0	18.2874460960422						530	25	4	NaN	NaN	NaN	1.0511E-05	1	33942	85.081	82.979	1	103130			8754	1188	7402	7595	8754	8754		
HTWMEDADSCVAHNALECAR	20	Unmodified	_HTWMEDADSCVAHNALECAR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	594.000585	2371.97323	0.0018709	1.1113E-06	1.2579	0.00074721	1.2598	0.00074833	594.252419402028	10.401	0.044329	10.401	10.383	10.427	0	666	16	0.877991458330206	0.0101670340418551	0.877991458330206	707.401341156381	0	8.1916212835024						64	6	3	NaN	NaN	NaN	0.001846	1	36218	27.669	27.669	1	12289			8755	396	7403	7596	8755	8755		
HTYLPLEVCNIVAGQR	16	Unmodified	_HTYLPLEVCNIVAGQR_			0	0	0	Q9UKV8;Q9H9G7;Q9UL18;Q9HCK5	Q9UKV8	Q9UKV8	AGO2;AGO3;AGO1;AGO4	Protein argonaute-2;Protein argonaute-3;Protein argonaute-1;Protein argonaute-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.992844	1868.9567	0.79647	0.00049699	-2.599	-0.0016218	-1.8026	-0.0011248	624.325419086967	13.593	0.079796	13.593	13.558	13.637	0	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	558.417987643845	0	9.8160426016259						130	10	4	NaN	NaN	NaN	0.0023901	1	28910	55.754	50.66	1	23807			8756	2935	7404	7597	8756	8756		
HVAEVLEYTK	10	Unmodified	_HVAEVLEYTK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.816596	1187.61864	1.8193	0.0010821	2.4822	0.0014764	4.3014	0.0025586	594.818147370443	5.7711	0.26605	5.7711	5.7091	5.9751	0	582	46	0.934820374997243	0.0303787174867894	0.934820374997243	378.776148407805	0	12.309031671725						578	31	4	NaN	NaN	NaN	3.9417E-07	1	9093	150.53	125.71	1	267320			8757	527	7405	7598	8757	8757		
HVDAHATLNDGVVVQVMGLLSNNNQALR	28	Unmodified	_HVDAHATLNDGVVVQVMGLLSNNNQALR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	747.138535	2984.52504	0.90291	0.0006746	0.48718	0.00036399	1.3901	0.0010386	747.389192574061	18.355	0.13298	18.355	18.293	18.426	0	402	28	1.05585747106793	0.018084171566231	1.05585747106793	849.692194861786	0	14.5530811226123						323	16	6	NaN	NaN	NaN	4.1168E-15	1	38196	122.16	120.79	1	74200			8758	1649	7406	7599	8758	8758		
HVDLLEVAQETDGFSGSDLK	20	Unmodified	_HVDLLEVAQETDGFSGSDLK_			0	0	0	Q8NBU5	Q8NBU5	Q8NBU5	ATAD1	ATPase family AAA domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.5264	2159.03824	1.3065	0.0014118	-2.9319	-0.003168	-1.6254	-0.0017563	1080.52141044649	14.542	0.13301	14.542	14.48	14.613	0	111	52	1.24942920585258	0.0337156554157727	1.24942920585258	503.626755845071	0	13.5902907333186						417	16	5	NaN	NaN	NaN	0.00033839	1	34157	52.662	51.391	1	79205			8759	2295	7407	7600	8759	8759		
HVDNIMFENHTVADR	15	Unmodified	_HVDNIMFENHTVADR_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.420485	1796.82642	2.1196	0.0019065	-0.89413	-0.0008042	1.2255	0.0011023	899.921169514929	6.5959	0.044336	6.5959	6.5693	6.6136	0	285	25	1.13399579921816	0.015985375365998	1.13399579921816	457.685761542173	0	6.4517687834192						106	6	3	NaN	NaN	NaN	0.037258	1	27129	37.504	35.52	1	17057			8760	2334	7408	7601	8760	8760		
HVDNIMFENHTVADR	15	Unmodified	_HVDNIMFENHTVADR_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.949415	1796.82642	0.91587	0.00054947	2.2012	0.0013206	3.1171	0.0018701	600.285619174276	6.587	0.16849	6.587	6.5427	6.7111	0	603	34	0.920633820089869	0.0223055201987317	0.920633820089869	557.355468165189	0	13.5038528693402						294	20	4	NaN	NaN	NaN	1.2047E-08	1	27130	206.03	204.04	1	101340			8761	2334	7408	7601	8761	8761		
HVDYVADQIVTK	12	Unmodified	_HVDYVADQIVTK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.364441	1386.71433	1.8698	0.0012984	-0.99275	-0.00068933	0.87709	0.00060902	694.363964931772	6.6047	0.19506	6.6047	6.5604	6.7555	0	480	55	1.00353128488872	0.0362859024304513	1.00353128488872	405.945740007392	0	14.6782743455765						526	23	3	NaN	NaN	NaN	3.9336E-05	1	15049	91.245	67.409	1	404090			8762	652	7409	7602	8762	8762		
HVDYVVDQVVGK	12	Unmodified	_HVDYVVDQVVGK_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.359159	1356.70376	1.5188	0.0010318	-0.81879	-0.00055625	0.69997	0.00047553	679.35872976854	7.8818	0.15072	7.8818	7.8374	7.9881	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.688055538023	0	8.16765797162401						270	18	3	NaN	NaN	NaN	0.0010576	1	14100	58.889	46.294	1	73669			8763	1534	7410	7603	8763	8763		
HVEAVAYYK	9	Unmodified	_HVEAVAYYK_			0	0	0	O43765	O43765	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.279649	1078.54475	2.9793	0.0016097	-0.090915	-4.912E-05	2.8884	0.0015605	540.279531800805	3.8381	0.17733	3.8381	3.8115	3.9888	0	603	40	0.920633820089869	0.0263610708448411	0.920633820089869	373.460854449854	0	10.6935328977665						215	21	2	NaN	NaN	NaN	3.4551E-05	1	6175	125.5	107.09	1	94065			8764	227	7411	7604	8764	8764		
HVEDGNVTVQHAALSALR	18	Unmodified	_HVEDGNVTVQHAALSALR_			0	0	0	P52306	P52306	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.669417	1915.98642	1.7193	0.0010998	-0.94795	-0.00060638	0.77133	0.0004934	640.003517193658	7.7931	0.12421	7.7931	7.7576	7.8818	-8.8818E-16	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	573.026255545032	0	14.696954089613						243	15	3	NaN	NaN	NaN	2.5909E-19	1	29978	140.3	136.23	1	70169			8765	1210	7412	7605	8765	8765		
HVEDLLTK	8	Unmodified	_HVEDLLTK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.766374	953.518196	0.75639	0.00036138	-0.28789	-0.00013754	0.4685	0.00022383	477.766465077924	4.9642	0.15958	4.9642	4.9287	5.0883	0	711	37	0.847456455381371	0.0244534611468455	0.847456455381371	344.343866089989	0	9.93608497181935						251	19	3	NaN	NaN	NaN	0.00045173	1	3314	109.36	86.971	1	79458			8766	667	7413	7606	8766	8766		
HVEEFSPR	8	Unmodified	_HVEEFSPR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.745973	999.477394	1.5156	0.00075895	-0.065285	-3.2691E-05	1.4504	0.00072626	500.745892424569	3.0045	0.25715	3.0045	2.9602	3.2173	0	678	34	0.869855008346864	0.0223830071318586	0.869855008346864	353.213923925205	0	9.08885929542981						363	30	3	NaN	NaN	NaN	0.0032369	1	4269	82.716	73.984	1	88651			8767	1757	7414	7607	8767	8767		
HVEELLR	7	Unmodified	_HVEELLR_			0	0	0	P42229	P42229	P42229	STAT5A	Signal transducer and activator of transcription 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.253434	894.492316	0.77889	0.00034914	-3.5796	-0.0016046	-2.8007	-0.0012554	448.251612083586	4.2017	0.14187	4.2017	4.1662	4.3081	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	344.66659812791	0	6.63026432327479						132	17	2	NaN	NaN	NaN	0.046434	1	2249	56.091	0	1	27425			8768	1046	7415	7608	8768	8768		
HVEFDFLIK	9	Unmodified	_HVEFDFLIK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.310949	1146.60735	0.52079	0.0002991	0.081412	4.6756E-05	0.6022	0.00034585	574.31104454102	13.247	0.15076	13.247	13.194	13.345	0	585	34	0.932794566565362	0.0222869832094168	0.932794566565362	378.110529766838	0	9.03408245531062						314	18	3	NaN	NaN	NaN	0.0004641	1	7974	72.038	60.678	1	99726			8769	2823	7416	7609	8769	8769		
HVFGESDELIGQK	13	Unmodified	_HVFGESDELIGQK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.912296	1457.71506	-0.36059	-0.00017558	0.42246	0.0002057	0.061868	3.0124E-05	487.247176110886	7.6156	0.14193	7.6156	7.5801	7.7221	0	753	34	0.81889964927511	0.0224546522756353	0.81889964927511	496.646349371687	0	13.6182999821488						356	17	5	NaN	NaN	NaN	3.8379E-05	1	17187	112.8	100.21	1	106260			8770	1303	7417	7610	8770	8770		
HVFGESDELIGQK	13	Unmodified	_HVFGESDELIGQK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.864805	1457.71506	2.4782	0.0018087	1.271	0.00092764	3.7492	0.0027364	729.865953348141	7.6245	0.41685	7.6245	7.5358	7.9527	0	444	82	1.02770517576159	0.0543424867904809	1.02770517576159	415.524526340577	0	21.9719007127215						1472	48	6	NaN	NaN	NaN	1.3135E-07	1	17189	164.31	122.23	1	2214600			8771	1303	7417	7610	8771	8771		
HVFNMLK	7	Unmodified	_HVFNMLK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.741648	887.468743	-0.55691	-0.00024768	0.1692	7.525E-05	-0.38771	-0.00017243	444.74180324287	6.2234	0.10646	6.2234	6.1879	6.2944	0	723	28	0.839303037468863	0.0183515663260597	0.839303037468863	341.391358665568	0	7.46460560966005						163	13	3	NaN	NaN	NaN	0.027856	1	2112	67.889	50.194	1	39137			8772	523	7418	7611	8772	8772		
HVFWGSGSHTLPALLENLK	19	Unmodified	_HVFWGSGSHTLPALLENLK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	527.283729	2105.10581	-0.69484	-0.00036638	-1.2762	-0.00067289	-1.971	-0.0010393	527.533720736875	15.393	0.19519	15.393	15.296	15.491	0	714	28	0.845418525735192	0.018341368585978	0.845418525735192	681.659174851653	0	14.788606820622						460	23	4	NaN	NaN	NaN	0.0014512	1	33392	45.183	44.617	1	128910			8773	495	7419	7612	8773	8773		
HVFWGSGSHTLPALLENLK	19	Unmodified	_HVFWGSGSHTLPALLENLK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.56018	2105.10581	1.1468	0.0012082	-0.63363	-0.00066757	0.51315	0.00054063	1054.06104922373	15.375	0.10638	15.375	15.331	15.437	0	60	52	1.28308947459206	0.0336418368402702	1.28308947459206	517.279408139893	0	13.5627559839556						399	13	3	NaN	NaN	NaN	0.0021284	1	33393	45.183	42.289	1	85584			8774	495	7419	7612	8774	8774		
HVFWGSGSHTLPALLENLK	19	Unmodified	_HVFWGSGSHTLPALLENLK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.709213	2105.10581	1.1965	0.0008408	-0.37034	-0.00026024	0.82618	0.00058056	703.043345376551	15.384	0.23067	15.384	15.269	15.5	0	504	91	0.987393073566096	0.0605267195380434	0.987393073566096	597.101581348469	0	36.6020391650861						1558	27	4	NaN	NaN	NaN	1.1888E-14	1	33394	139.61	132.62	1	469090			8775	495	7419	7612	8775	8775		
HVFYSTIDWNK	11	Unmodified	_HVFYSTIDWNK_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.346052	1408.67755	1.3757	0.00097036	3.7295	0.0026306	5.1053	0.003601	705.348936556555	9.5406	0.18619	9.5406	9.443	9.6292	0	471	46	1.00957851518677	0.030219453730939	1.00957851518677	408.329063779442	0	12.2224087223148						256	22	2	NaN	NaN	NaN	0.00045866	1	15718	81.163	70.461	1	79170			8776	1845	7420	7613	8776	8776		
HVGDLGNVTADK	12	Unmodified	_HVGDLGNVTADK_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.312209	1224.60986	1.7328	0.0010628	-1.4835	-0.00090987	0.24928	0.00015288	613.311052921277	4.6716	0.17735	4.6716	4.5297	4.7071	0	573	7	0.940896116921038	0.00404909238874696	0.940896116921038	381.105697699197	0	1.64006647717031						67	21	2	NaN	NaN	NaN	0.0048078	1	10136	48.785	44.893	1	19759			8777	479	7421	7614	8777	8777		
HVGDLGNVTADK	12	Unmodified	_HVGDLGNVTADK_			0	0	0	P00441	P00441	P00441	SOD1	Superoxide dismutase [Cu-Zn]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.312209	1224.60986	2.8065	0.0017213	-0.27991	-0.00017167	2.5266	0.0015496	613.311860731818	4.246	0.39899	4.246	4.1219	4.5209	0	567	124	0.944945209309785	0.0831389128090428	0.944945209309785	382.745759033329	0	33.6750384834967						1449	46	5	NaN	NaN	NaN	4.7347E-11	1	10138	141.44	118.55	1	2818800			8778	479	7421	7614	8778	8778		
HVGMAVAGLLADAR	14	Unmodified	_HVGMAVAGLLADAR_			0	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.874453	1379.73435	1.0112	0.00069864	2.064	0.0014259	3.0752	0.0021246	690.876223755714	11.758	0.23058	11.758	11.713	11.944	0	444	46	1.02770517576159	0.030194421347751	1.02770517576159	415.745245624017	0	12.2147746413685						579	27	4	NaN	NaN	NaN	6.8267E-08	1	14819	115.41	104.62	1	188290			8779	843	7422	7615	8779	8779		
HVGMAVAGLLADAR	14	Oxidation (M)	_HVGM(Oxidation (M))AVAGLLADAR_	HVGM(1)AVAGLLADAR	HVGM(46)AVAGLLADAR	0	1	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.871911	1395.72927	1.3823	0.00096608	0.055722	3.8942E-05	1.4381	0.001005	698.871422455521	9.9307	0.23938	9.9307	9.842	10.081	0	465	40	1.01360860968299	0.0261974290560794	1.01360860968299	409.996041950506	0	10.5966367290733						283	28	3	NaN	NaN	NaN	0.070247	1	15324	46.033	27.526	1	69090			8780	843	7422	7616	8780	8780	284	
HVHLQLDTER	10	Unmodified	_HVHLQLDTER_			0	0	0		REV__Q96K83	REV__Q96K83			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.328193	1246.64183	1.3992	0.00087357	-5.2852	-0.0032997	-3.8859	-0.0024261	624.324957350554	8.7422	0.23073	8.7422	8.6623	8.8931	0	549	70	0.957085760909907	0.0465033917347906	0.957085760909907	387.586885075801	0	18.8322776119996						657	27	3	NaN	NaN	NaN	0.0011833	1	10825	49.96	12.238	1	173170	+		8781	3509	7423	7617	8781	8781		
HVIADQEVMETNRVESVEPSENEASK	26	Unmodified	_HVIADQEVMETNRVESVEPSENEASK_			0	0	1	Q9H307	Q9H307	Q9H307	PNN	Pinin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	732.597637	2926.36144	2.1151	0.0015495	-0.19149	-0.00014029	1.9236	0.0014092	732.84811548903	7.6777	0.062129	7.6777	7.6511	7.7132	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	802.788651658796	0	14.610809114623						87	8	3	NaN	NaN	NaN	0.046842	1	38114	25.664	24.929	1	15768			8782	2877	7424	7618	8782	8782		
HVIDFFK	7	Unmodified	_HVIDFFK_			0	0	0	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.247621	904.480688	-0.39957	-0.00018111	0.033858	1.5346E-05	-0.36572	-0.00016576	453.247539962038	9.3189	0.15965	9.3189	9.2745	9.4342	0	681	28	0.867820189810857	0.0183184547264154	0.867820189810857	352.889730597777	0	7.44900225792298						261	19	3	NaN	NaN	NaN	0.020665	1	2406	73.637	51.709	1	77015			8783	3047	7425	7619	8783	8783		
HVILGTQQFK	10	Unmodified	_HVILGTQQFK_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.835123	1169.65569	1.2071	0.00070716	-0.11398	-6.6775E-05	1.0931	0.00064038	585.835198944643	5.8687	0.19513	5.8687	5.8066	6.0017	0	594	46	0.926715457081489	0.0303955552959029	0.926715457081489	375.558374107066	0	12.3180262504318						348	23	4	NaN	NaN	NaN	1.4293E-07	1	8608	133.98	112.7	1	136340			8784	168	7426	7620	8784	8784		
HVINFDLPSDIEEYVHR	17	Unmodified	_HVINFDLPSDIEEYVHR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	521.51154	2082.01705	-0.97065	-0.00050621	-2.3775	-0.0012399	-3.3482	-0.0017461	521.760491857509	15.42	0.044322	15.42	15.393	15.437	-1.7764E-15	714	16	0.845418525735192	0.0101910644357553	0.845418525735192	681.708625676889	0	8.21762987112436						48	6	2	NaN	NaN	NaN	0.022789	1	33060	24.744	24.346	1	10482			8785	93	7427	7621	8785	8785		
HVINFDLPSDIEEYVHR	17	Unmodified	_HVINFDLPSDIEEYVHR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.012961	2082.01705	1.1609	0.00080682	0.5131	0.00035661	1.674	0.0011634	695.347641945034	15.411	0.25728	15.411	15.313	15.571	0	522	46	0.975277694896658	0.0302989286426463	0.975277694896658	589.817923407494	0	18.3238592115767						924	30	6	NaN	NaN	NaN	3.3163E-19	1	33061	240.52	194.16	1	577070			8786	93	7427	7621	8786	8786		
HVINFDLPSDIEEYVHR	17	Unmodified	_HVINFDLPSDIEEYVHR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.0158	2082.01705	1.1732	0.0012225	7.2315	0.0075353	8.4047	0.0087578	1042.02512047684	15.411	0.14201	15.411	15.349	15.491	0	132	73	1.23554629282893	0.0476410235457427	1.23554629282893	498.148479374806	0	19.207943541179						575	17	3	NaN	NaN	NaN	0.0029392	1	33063	27.357	23.916	1	115860			8787	93	7427	7621	8787	8787		
HVIPMNPNTDDLFK	14	Unmodified	_HVIPMNPNTDDLFK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.90869	1639.80283	1.9455	0.0015971	-0.77622	-0.0006372	1.1693	0.00095986	820.90882722386	11.163	0.12415	11.163	11.119	11.243	0	285	73	1.13399579921816	0.0479759546023661	1.13399579921816	458.02125187016	0	19.3775028106734						465	15	4	NaN	NaN	NaN	0.00016413	1	22752	70.195	59.408	1	95384			8788	683	7428	7622	8788	8788		
HVIPMNPNTDDLFK	14	Unmodified	_HVIPMNPNTDDLFK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.608219	1639.80283	0.67333	0.00036872	0.66114	0.00036205	1.3345	0.00073077	547.608552869582	11.172	0.16847	11.172	11.11	11.279	0	615	52	0.912521036363781	0.0344960752489721	0.912521036363781	552.848440601604	0	20.8993553554277						775	20	5	NaN	NaN	NaN	0.0021862	1	22753	90.263	75.807	1	292430			8789	683	7428	7622	8789	8789		
HVIPMNPNTDDLFK	14	Oxidation (M)	_HVIPM(Oxidation (M))NPNTDDLFK_	HVIPM(1)NPNTDDLFK	HVIPM(81)NPNTDDLFK	0	1	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.939857	1655.79774	0.15823	8.7492E-05	0.31955	0.00017669	0.47778	0.00026418	553.274306698226	9.0972	0.15961	9.0972	9.044	9.2036	0	654	46	0.886123392477847	0.0304926449170472	0.886123392477847	536.812102929459	0	18.4723944551668						238	19	2	NaN	NaN	NaN	0.0010281	1	23213	81.335	74.959	1	52652			8790	683	7428	7623	8790	8790	219	
HVISYSLSPFEQR	13	Unmodified	_HVISYSLSPFEQR_			0	0	0	O14949	O14949	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.901722	1561.78889	2.061	0.0016115	-3.1417	-0.0024565	-1.0808	-0.00084504	781.899172548497	10.401	0.18621	10.401	10.321	10.507	0	399	61	1.0578662689527	0.0401510490919958	1.0578662689527	427.451279057868	0	16.2238061592419						453	22	3	NaN	NaN	NaN	0.0019281	1	20398	62.271	52.757	1	101810			8791	127	7429	7624	8791	8791		
HVISYSLSPFEQR	13	Unmodified	_HVISYSLSPFEQR_			0	0	0	O14949	O14949	O14949	UQCRQ	Cytochrome b-c1 complex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.603574	1561.78889	0.42559	0.00022199	0.80242	0.00041855	1.228	0.00064053	521.603566253638	10.41	0.088679	10.41	10.356	10.445	0	687	40	0.863749705078866	0.0264599929662752	0.863749705078866	523.519120041858	0	16.0374147192947						248	11	4	NaN	NaN	NaN	0.00016712	1	20399	81.099	64.107	1	72285			8792	127	7429	7624	8792	8792		
HVLDTLIQLAK	11	Unmodified	_HVLDTLIQLAK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.876988	1249.73942	1.4353	0.00089831	-1.3553	-0.00084826	0.079968	5.005E-05	625.876030880719	14.498	0.14187	14.498	14.453	14.595	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.751543561528	0	8.98409811943429						343	17	4	NaN	NaN	NaN	1.8188E-07	1	10920	146.88	116.29	1	160920			8793	2149	7430	7625	8793	8793		
HVLFPLK	7	Unmodified	_HVLFPLK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.268356	852.522159	1.2729	0.00054386	-0.57391	-0.00024521	0.69896	0.00029864	427.26814135288	7.7576	0.25724	7.7576	7.6688	7.9261	0	654	52	0.886123392477847	0.0345583335678743	0.886123392477847	360.660768824406	0	14.0655751328576						672	30	3	NaN	NaN	NaN	0.019064	1	1606	60.001	51.997	1	247950			8794	1251	7431	7626	8794	8794		
HVLNLLDEIENIK	13	Unmodified	_HVLNLLDEIENIK_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.290996	1548.85116	-1.8759	-0.00097038	-1.052	-0.00054417	-2.9278	-0.0015145	517.290275792006	17.016	0.062066	17.016	16.989	17.051	0	714	19	0.845418525735192	0.0122267289803111	0.845418525735192	512.446155529902	0	7.41116981700611						90	8	3	NaN	NaN	NaN	0.026038	1	20015	43.168	40.497	1	15772			8795	2471	7432	7627	8795	8795		
HVLVILTDMSSYAEALR	17	Unmodified	_HVLVILTDMSSYAEALR_			0	0	0	P21281;P15313	P21281	P21281	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.008271	1917.00298	-0.3718	-0.00023796	0.58393	0.00037372	0.21213	0.00013576	640.34296747906	17.982	0.079806	17.982	17.947	18.027	0	555	19	0.953040030838688	0.0121388709649835	0.953040030838688	576.69752755114	0	7.34539646420501						109	10	3	NaN	NaN	NaN	0.036201	1	29999	36.952	36.763	1	18105			8796	789	7433	7628	8796	8796		
HVLVTLGEK	9	Unmodified	_HVLVTLGEK_			0	0	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.297842	994.581131	0.74974	0.00037359	2.7816	0.0013861	3.5314	0.0017597	498.299298525483	5.3278	0.23939	5.3278	5.2745	5.5139	0	666	46	0.877991458330206	0.0305053430673474	0.877991458330206	356.541632297947	0	12.3878480910578						767	28	4	NaN	NaN	NaN	7.7844E-05	1	4161	137.84	121.39	1	719750			8797	1309	7434	7629	8797	8797		
HVMDGSLPTSLK	12	Unmodified	_HVMDGSLPTSLK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.834462	1283.65437	1.8732	0.0012041	-0.22339	-0.0001436	1.6498	0.0010605	642.83499074909	7.4117	0.15073	7.4117	7.3585	7.5092	0	528	40	0.971237000454584	0.0262663358758335	0.971237000454584	393.193381657774	0	10.633603767097						411	18	4	NaN	NaN	NaN	0.030867	1	11871	40.533	26.078	1	132010			8798	2149	7435	7630	8798	8798		
HVMDVVDEELSK	12	Unmodified	_HVMDVVDEELSK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.839942	1399.66533	1.4652	0.0010269	-0.64766	-0.00045391	0.81754	0.00057296	700.839184310479	9.6204	0.2128	9.6204	9.5406	9.7534	0	507	43	0.985374541851584	0.0282535899920621	0.985374541851584	398.564609316647	0	11.4280211013154						497	25	5	NaN	NaN	NaN	3.7221E-07	1	15439	88.24	76.222	1	203230			8799	990	7436	7631	8799	8799		
HVPVVYVDYPGPASLTQIYGTFNR	24	Unmodified	_HVPVVYVDYPGPASLTQIYGTFNR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	898.462255	2692.36494	0.45348	0.00040744	0.46014	0.00041342	0.91362	0.00082085	898.797085379388	17.238	0.19508	17.238	17.149	17.344	0	468	34	1.01159370163332	0.0221639917190946	1.01159370163332	610.861751121567	0	13.3839650953834						563	23	5	NaN	NaN	NaN	5.784E-18	1	37585	135.89	134.27	1	124270			8800	1737	7437	7632	8800	8800		
HVQLVLGQLIDENYLDR	17	Unmodified	_HVQLVLGQLIDENYLDR_			0	0	0	O94874	O94874	O94874	UFL1	E3 UFM1-protein ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.696973	2024.06909	0.27477	0.00018566	5.2495	0.0035471	5.5243	0.0037327	676.371827124185	16.227	0.133	16.227	16.191	16.324	0	489	31	0.997481546940468	0.020167188996535	0.997481546940468	603.360409383088	0	12.1988055281604						202	16	3	NaN	NaN	NaN	0.0022596	1	32049	51.829	50.558	1	46949			8801	391	7438	7633	8801	8801		
HVQLVMEAIGK	11	Unmodified	_HVQLVMEAIGK_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.842091	1223.66963	1.0811	0.00066255	1.2002	0.00073556	2.2814	0.0013981	612.843420129874	8.618	0.17745	8.618	8.5736	8.7511	0	564	28	0.946969335010767	0.0182120890547127	0.946969335010767	383.568900436723	0	7.3767868874998						230	21	3	NaN	NaN	NaN	0.0032081	1	10129	73.655	59.66	1	63367			8802	1968	7439	7634	8802	8802		
HVQSLEPDPGTPGSER	16	Unmodified	_HVQSLEPDPGTPGSER_			0	0	0	Q9NX46	Q9NX46	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.41064	1704.80673	2.6301	0.0022445	-2.2422	-0.0019135	0.38793	0.00033106	853.408934086733	4.5475	0.070929	4.5475	4.5209	4.5918	0	396	19	1.05987478976334	0.0120502942720162	1.05987478976334	427.94698139693	0	4.86556252536724						65	9	2	NaN	NaN	NaN	0.0028937	1	24620	51.829	49.35	1	12454			8803	3095	7440	7635	8803	8803		
HVQYLDFLHTVIK	13	Unmodified	_HVQYLDFLHTVIK_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.299714	1611.87731	-0.38527	-0.00020739	-2.3632	-0.0012721	-2.7485	-0.0014795	538.298167246274	14.453	0.097549	14.453	14.418	14.515	0	714	28	0.845418525735192	0.018341368585978	0.845418525735192	512.268820228192	0	11.1136803380771						207	12	4	NaN	NaN	NaN	0.00081718	1	21959	53.028	48.5	1	56168			8804	1758	7441	7636	8804	8804		
HVSIQEAESYAESVGAK	17	Unmodified	_HVSIQEAESYAESVGAK_			0	0	0	Q9UL25	Q9UL25	Q9UL25	RAB21	Ras-related protein Rab-21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.295245	1803.86391	1.0373	0.00062477	1.2991	0.00078247	2.3365	0.0014072	602.295156583291	10.933	0.13304	10.933	10.888	11.021	0	561	25	0.948993180460448	0.0161896439888687	0.948993180460448	574.507197295664	0	9.80098401628845						286	16	4	NaN	NaN	NaN	5.6586E-05	1	27322	106.47	106.28	1	73187			8805	3273	7442	7637	8805	8805		
HVSPAGAAVGIPLSEDEAK	19	Unmodified	_HVSPAGAAVGIPLSEDEAK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.478522	1846.94249	2.3832	0.0022032	-1.5712	-0.0014525	0.81198	0.00075066	924.978912652869	8.7156	0.13321	8.7156	8.6712	8.8044	0	252	67	1.15595906938629	0.0439295798915715	1.15595906938629	466.45327021307	0	17.7264894079588						594	16	4	NaN	NaN	NaN	0.00081671	1	28412	37.886	34.381	1	158670			8806	929	7443	7638	8806	8806		
HVSPAGAAVGIPLSEDEAK	19	Unmodified	_HVSPAGAAVGIPLSEDEAK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.654774	1846.94249	1.539	0.00094901	1.1444	0.00070571	2.6834	0.0016547	616.989782203466	8.7245	0.15983	8.7245	8.6712	8.831	0	492	40	0.995464410099171	0.0262264093657728	0.995464410099171	602.533098722889	0	15.8742789226987						557	19	5	NaN	NaN	NaN	0.0013429	1	28413	67.887	60.311	1	233140			8807	929	7443	7638	8807	8807		
HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAK	37	Unmodified	_HVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAK_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	903.990906	3611.93452	0.17603	0.00015913	-1.8721	-0.0016924	-1.6961	-0.0015332	904.490344860763	19.986	0.026624	19.986	19.978	20.004	0	504	25	0.987393073566096	0.0161471385123466	0.987393073566096	793.955639476194	0	12.983797462726						106	4	6	NaN	NaN	NaN	5.569E-09	1	38688	62.299	62.27	1	31870			8808	1910	7444	7639	8808	8808		
HVVFGEVTEGLDVLR	15	Unmodified	_HVVFGEVTEGLDVLR_			0	0	0	Q9UNP9	Q9UNP9	Q9UNP9	PPIE	Peptidyl-prolyl cis-trans isomerase E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.301783	1668.88352	0.39173	0.00021831	-2.0439	-0.0011391	-1.6522	-0.00092077	557.300315901071	14.462	0.070964	14.462	14.435	14.506	0	609	22	0.916577990479294	0.0141983560762999	0.916577990479294	555.225371412211	0	8.60078204778199						127	9	4	NaN	NaN	NaN	0.026239	1	23604	60.547	56.301	1	25220			8809	3303	7445	7640	8809	8809		
HVVLGAIENK	10	Unmodified	_HVVLGAIENK_			0	0	0	P41227	P41227	P41227	NAA10	N-alpha-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.314023	1078.61349	1.9529	0.0010552	-0.29017	-0.00015678	1.6627	0.00089838	540.313868958231	5.0174	0.13301	5.0174	4.9819	5.1149	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	367.700109612217	0	9.87984363989978						318	16	4	NaN	NaN	NaN	2.4758E-07	1	6187	150.24	124.02	1	139190			8810	1032	7446	7641	8810	8810		
HVVLYPLVAK	10	Unmodified	_HVVLYPLVAK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.852784	1137.69102	1.4518	0.00082731	0.2912	0.00016594	1.743	0.00099325	569.852939528315	9.2036	0.23062	9.2036	9.1149	9.3455	0	525	37	0.973257487423603	0.0242475250130607	0.973257487423603	394.549010469866	0	9.82970809253339						478	27	3	NaN	NaN	NaN	0.00017214	1	7748	92.677	78.682	1	124050			8811	57	7447	7642	8811	8811		
HVVQSISTQQEK	12	Unmodified	_HVVQSISTQQEK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.364973	1382.71539	2.5301	0.0017517	-0.97576	-0.00067558	1.5543	0.0010762	692.364628434095	2.6498	0.14187	2.6498	2.6321	2.774	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	388.804938271526	0	8.17967585994779						216	17	3	NaN	NaN	NaN	0.02252	1	14914	60.547	41.224	1	46312			8812	830	7448	7643	8812	8812		
HVVSCSSQDSTHCAENLLK	19	Unmodified	_HVVSCSSQDSTHCAENLLK_			0	0	0	P18887	P18887	P18887	XRCC1	DNA repair protein XRCC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.665127	2170.97355	2.3165	0.0016787	0.29096	0.00021085	2.6075	0.0018896	724.999460449593	5.6559	0.053263	5.6559	5.6203	5.6736	0	465	25	1.01360860968299	0.0161181521941178	1.01360860968299	612.832992506107	0	9.74511793647775						90	7	2	NaN	NaN	NaN	0.00076376	1	34320	57.62	47.599	1	33755			8813	761	7449	7644	8813	8813		
HVVTLLQVQDCHVLK	15	Unmodified	_HVVTLLQVQDCHVLK_			0	0	0	P09001	P09001	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.993088	1787.97162	1.6932	0.0015154	-0.43994	-0.00039374	1.2532	0.0011216	894.992547156701	9.5849	0.044337	9.5849	9.576	9.6204	0	183	25	1.20177511391933	0.0159108621736821	1.20177511391933	485.060189875948	0	6.42193846225234						80	6	3	NaN	NaN	NaN	4.5255E-06	1	26929	90.306	88.005	1	11862			8814	594	7450	7645	8814	8814		
HVYLVTELMR	10	Unmodified	_HVYLVTELMR_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.842091	1259.66963	0.95643	0.00060335	-0.75682	-0.00047744	0.1996	0.00012592	630.842152773323	11.509	0.14193	11.509	11.456	11.598	0	516	25	0.979317271586824	0.0161560731115115	0.979317271586824	396.544933402873	0	6.54191355746786						328	17	4	NaN	NaN	NaN	0.00057622	1	11210	46.447	38.8	1	74012			8815	1845	7451	7646	8815	8815		
HWDHLTQVK	9	Unmodified	_HWDHLTQVK_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	388.536724	1162.58834	0.036875	1.4327E-05	0.69475	0.00026994	0.73162	0.00028426	388.536972123846	3.8115	0.22166	3.8115	3.776	3.9977	0	834	28	0.763668499782291	0.0184462999547469	0.763668499782291	464.251735176716	0	11.2139321760984						360	26	4	NaN	NaN	NaN	0.0049144	1	8414	72.492	59.665	1	138780			8816	901	7452	7647	8816	8816		
HWDQDDDFEFTGSHLTVR	18	Unmodified	_HWDQDDDFEFTGSHLTVR_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.659246	2203.95591	1.1286	0.00083028	1.1376	0.0008369	2.2662	0.0016672	735.994413391406	11.039	0.070952	11.039	11.004	11.075	0	486	22	0.999498404980629	0.0141180070903043	0.999498404980629	604.244438758003	0	8.53500838836032						91	9	2	NaN	NaN	NaN	1.6996E-05	1	34721	48.892	45.987	1	32226			8817	257	7453	7648	8817	8817		
HWGGNVLGPK	10	Unmodified	_HWGGNVLGPK_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.785433	1063.55631	1.409	0.0007507	2.083	0.0011098	3.4921	0.0018605	532.786545766716	5.2835	0.36355	5.2835	5.2302	5.5937	0	609	49	0.916577990479294	0.0324601421719642	0.916577990479294	371.881646104922	0	13.1699988752703						945	42	4	NaN	NaN	NaN	2.7352E-05	1	5816	129.56	108.91	1	633130			8818	1391	7454	7649	8818	8818		
HWILPQDYDHAQAEAR	16	Unmodified	_HWILPQDYDHAQAEAR_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.646613	1948.91801	2.0185	0.0013133	0.10226	6.6537E-05	2.1207	0.0013799	650.981277832177	8.2898	0.20405	8.2898	8.2277	8.4318	0	552	67	0.955063035883597	0.0445092174223279	0.955063035883597	577.853731871904	0	26.9299684144879						1246	24	6	NaN	NaN	NaN	4.7634E-13	1	30693	238.02	232.63	1	1371800			8819	1831	7455	7650	8819	8819		
HWILPQDYDHAQAEAR	16	Unmodified	_HWILPQDYDHAQAEAR_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.466281	1948.91801	2.764	0.0026962	-0.6419	-0.00062615	2.1221	0.00207	975.967058680524	8.2987	0.15083	8.2987	8.2277	8.3785	0	225	76	1.17390432875292	0.0498548261502012	1.17390432875292	473.509742603568	0	20.1095994960729						811	18	5	NaN	NaN	NaN	0.00014916	1	30694	51.569	46.752	1	251680			8820	1831	7455	7650	8820	8820		
HWPFQVINDGDK	12	Unmodified	_HWPFQVINDGDK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.354408	1454.69426	1.6949	0.0012345	-0.3926	-0.00028595	1.3023	0.00094852	728.35406109982	11.332	0.6031	11.332	11.11	11.713	0	465	100	1.01360860968299	0.0665104280844176	1.01360860968299	409.832972291551	0	26.8922009637875						1847	69	4	NaN	NaN	NaN	0.0038284	1	17093	58.889	45.616	1	655720			8821	618	7456	7651	8821	8821		
HWPFQVINDGDKPK	14	Unmodified	_HWPFQVINDGDKPK_			0	0	1	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.954606	1679.84199	0.33762	0.00018939	-0.00031983	-1.7941E-07	0.3373	0.00018921	561.288846294011	9.3278	0.47	9.3278	9.0883	9.5583	0	666	58	0.877991458330206	0.0386240232169095	0.877991458330206	531.822686002504	0	23.3955940875617						1417	54	4	NaN	NaN	NaN	0.00034723	1	23910	81.799	78.714	1	895320			8822	618	7457	7652	8822	8822		
HWPFQVINDGDKPK	14	Unmodified	_HWPFQVINDGDKPK_			0	0	1	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.928271	1679.84199	1.8434	0.0015501	-0.40621	-0.00034159	1.4372	0.0012085	841.429290837662	9.3544	0.28378	9.3544	9.1681	9.4519	0	237	37	1.16593139812432	0.0239220824983335	1.16593139812432	470.82600050166	0	9.66020680503209						599	33	4	NaN	NaN	NaN	0.0028813	1	23911	66.953	60.577	1	138330			8823	618	7457	7652	8823	8823		
HWPTFISDIVGASR	14	Unmodified	_HWPTFISDIVGASR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.275568	1584.80488	-0.92347	-0.00048877	-0.56262	-0.00029778	-1.4861	-0.00078655	529.275035191351	15.987	0.3104	15.987	15.863	16.174	0	696	16	0.857641857947968	0.0101811592605797	0.857641857947968	519.750893849932	0	6.17001907856491						275	36	2	NaN	NaN	NaN	0.021406	1	21104	36.952	32.135	1	77604			8824	135	7458	7653	8824	8824		
HYAHTDCPGHADYVK	15	Unmodified	_HYAHTDCPGHADYVK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.926611	1769.758	1.3491	0.00079722	-0.11915	-7.0408E-05	1.2299	0.00072681	590.926652233626	2.4547	0.17734	2.4547	2.4281	2.6055	0	714	37	0.845418525735192	0.0244534611468455	0.845418525735192	511.879712850399	0	14.8059573915303						402	21	4	NaN	NaN	NaN	2.2726E-08	1	26391	143.22	134.84	1	118540			8825	1131	7459	7654	8825	8825		
HYAHTDCPGHADYVK	15	Unmodified	_HYAHTDCPGHADYVK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	443.446777	1769.758	0.36598	0.00016229	0.96486	0.00042787	1.3308	0.00059016	443.447315573475	2.4547	0.31039	2.4547	2.4281	2.7385	0	747	34	0.822982596624503	0.0224546522756353	0.822982596624503	664.390820494517	0	18.1275581166818						633	36	5	NaN	NaN	NaN	0.0020469	1	26392	48.701	48.701	1	287980			8826	1131	7459	7654	8826	8826		
HYCEPYTTWCQETYSQTK	18	Unmodified	_HYCEPYTTWCQETYSQTK_			0	0	0	Q9BUR5	Q9BUR5	Q9BUR5	APOO	Apolipoprotein O	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	794.664904	2380.97288	1.1678	0.00092797	-0.0026736	-2.1246E-06	1.1651	0.00092585	794.999544546961	8.5914	0.079813	8.5914	8.5648	8.6446	0	588	52	0.93076847747433	0.0344482986469864	0.93076847747433	562.432020280131	0	20.8159458255527						366	10	4	NaN	NaN	NaN	3.8135E-19	1	36259	172.09	171.72	1	75437			8827	2751	7460	7655	8827	8827		
HYEAVHDAGNDSGHGGESNLALK	23	Unmodified	_HYEAVHDAGNDSGHGGESNLALK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	595.274355	2377.06831	2.1631	0.0012877	2.0381	0.0012133	4.2013	0.0025009	595.276583464926	4.0154	0.079815	4.0154	3.9888	4.0686	0	600	22	0.922661313351899	0.0141924536519389	0.922661313351899	743.38275617463	0	11.434775859769						116	10	3	NaN	NaN	NaN	0.022232	1	36242	5.3295	5.3295	1	35402			8828	1810	7461	7656	8828	8828		
HYEDFPK	7	Unmodified	_HYEDFPK_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.216517	934.418482	0.34164	0.00015996	1.5557	0.00072839	1.8973	0.00088835	468.217007886404	3.4834	0.17747	3.4834	3.4213	3.5987	0	717	28	0.84338031290707	0.0183464663932061	0.84338031290707	342.787136668918	0	7.45681703340006						209	21	2	NaN	NaN	NaN	0.0095496	1	2955	66.087	46.6	1	48709			8829	396	7462	7657	8829	8829		
HYEDGYPGGSDNYGSLSR	18	Unmodified	_HYEDGYPGGSDNYGSLSR_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.41665	1972.81875	2.3963	0.0023662	-0.8938	-0.00088255	1.5025	0.0014836	987.917063301761	6.2855	0.079824	6.2855	6.2589	6.3387	0	279	37	1.13799159301878	0.0239714689101356	1.13799159301878	458.984547240795	0	9.668378810452						245	10	4	NaN	NaN	NaN	0.00030107	1	31159	54.556	52.968	1	54299			8830	276	7463	7658	8830	8830		
HYEVEILDAK	10	Unmodified	_HYEVEILDAK_			0	0	0	Q9NZ01	Q9NZ01	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.814053	1215.61355	1.711	0.0010417	2.1411	0.0013035	3.8521	0.0023452	608.81548153412	7.9438	0.31048	7.9438	7.8552	8.1656	0	510	49	0.983355730988811	0.0323076849488658	0.983355730988811	398.336607446516	0	13.0871598257137						797	36	5	NaN	NaN	NaN	5.1714E-10	1	9893	162.49	114.93	1	618580			8831	3124	7464	7659	8831	8831		
HYFQNTQGLIFVVDSNDR	18	Unmodified	_HYFQNTQGLIFVVDSNDR_			0	0	0	P61204;P84077;P18085;P84085	P61204;P18085;P84085	P61204	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.02416	2152.03377	1.4236	0.0015332	-0.52422	-0.00056459	0.89938	0.00096866	1077.52497126875	13.425	0.097565	13.425	13.398	13.496	0	153	34	1.22165005014568	0.0218519349767741	1.22165005014568	492.439619873646	0	8.80838056052403						233	12	3	NaN	NaN	NaN	0.030559	1	34062	27.467	27.162	1	50529			8832	1334;751;1483	7465	7660	8832	8832		
HYGFNEILK	9	Unmodified	_HYGFNEILK_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.792924	1119.57129	1.1336	0.0006357	2.4487	0.0013732	3.5822	0.0020089	560.793111923384	8.4672	0.12415	8.4672	8.4229	8.547	0	582	40	0.934820374997243	0.0263391634913087	0.934820374997243	379.040403634379	0	10.6797064207837						237	15	3	NaN	NaN	NaN	0.0098394	1	7253	72.492	38.679	1	66561			8833	2339	7466	7661	8833	8833		
HYGFQLYQSDPSGNYGGWK	19	Unmodified	_HYGFQLYQSDPSGNYGGWK_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.332582	2202.97592	0.011247	8.27E-06	0.28108	0.00020669	0.29233	0.00021496	735.66695607493	11.704	0.10638	11.704	11.669	11.775	0	624	70	0.906433495720521	0.0466711740875143	0.906433495720521	547.98379261938	0	28.2150285743201						584	13	5	NaN	NaN	NaN	2.0229E-07	1	34711	115.35	87.969	1	241130			8834	844	7467	7662	8834	8834		
HYGFQLYQSDPSGNYGGWK	19	Unmodified	_HYGFQLYQSDPSGNYGGWK_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.49524	2202.97592	1.1116	0.0012255	0.074196	8.1801E-05	1.1858	0.0013073	1102.99686895434	11.704	0.079806	11.704	11.66	11.74	0	150	64	1.22363604450103	0.0416944646743262	1.22363604450103	493.167007453414	0	16.8042895297306						438	10	5	NaN	NaN	NaN	0.00098433	1	34712	41.87	37.711	1	92059			8835	844	7467	7662	8835	8835		
HYGPGWVSMANAGK	14	Unmodified	_HYGPGWVSMANAGK_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.848435	1473.68232	2.8365	0.0020929	-1.1023	-0.0008133	1.7342	0.0012796	737.84841488219	7.6777	0.11535	7.6777	7.6422	7.7576	-8.8818E-16	426	28	1.03977710643793	0.0181016489291916	1.03977710643793	420.362662851915	0	7.31816203566297						228	14	4	NaN	NaN	NaN	0.00018346	1	17690	71.066	62.592	1	53948			8836	816	7468	7663	8836	8836		
HYGYSLYSAIK	11	Unmodified	_HYGYSLYSAIK_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.32987	1300.64519	1.6884	0.0010997	0.77911	0.00050746	2.4676	0.0016072	651.832287853315	8.3076	0.275	8.3076	8.2188	8.4938	0	513	67	0.981336640919867	0.0444476643821431	0.981336640919867	397.226839705367	0	17.9915887358019						497	32	3	NaN	NaN	NaN	0.00073112	1	12366	99.855	76.019	1	153880			8837	669	7469	7664	8837	8837		
HYILDLLR	8	Unmodified	_HYILDLLR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.805834	1041.59712	0.67787	0.00035372	-1.2965	-0.0006765	-0.61858	-0.00032278	521.80517503626	13.309	0.16852	13.309	13.256	13.425	0	615	52	0.912521036363781	0.0344960752489721	0.912521036363781	370.335406691608	0	13.9998066318545						464	20	4	NaN	NaN	NaN	1.5831E-07	1	5267	140.12	108.16	1	201420			8838	307	7470	7665	8838	8838		
HYLDFINHYANLFHEK	16	Unmodified	_HYLDFINHYANLFHEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	516.004888	2059.99044	-1.1942	-0.0006162	-0.86656	-0.00044715	-2.0607	-0.0010634	516.254945425615	15.03	0.15961	15.03	14.994	15.154	0	750	28	0.820941264895493	0.0183745423602224	0.820941264895493	662.0180268104	0	14.8174769584851						420	19	7	NaN	NaN	NaN	0.00012423	1	32702	59.731	57.016	1	157430			8839	1737	7471	7666	8839	8839		
HYLDFINHYANLFHEK	16	Unmodified	_HYLDFINHYANLFHEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.670758	2059.99044	0.35168	0.00024184	1.0244	0.00070444	1.3761	0.00094628	688.005739850067	15.03	0.08867	15.03	14.994	15.083	0	546	34	0.959108205975751	0.0222438199941358	0.959108205975751	580.080162335652	0	13.4533294916774						203	11	3	NaN	NaN	NaN	1.173E-08	1	32705	88.42	74.642	1	67017			8840	1737	7471	7666	8840	8840		
HYLFYDGESVSGK	13	Unmodified	_HYLFYDGESVSGK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.351531	1500.68851	2.0421	0.0015343	2.1183	0.0015916	4.1604	0.0031259	751.353926926059	8.4318	0.20395	8.4318	8.3874	8.5914	0	411	82	1.04982941439551	0.0542226293674211	1.04982941439551	424.355556543477	0	21.9175360748599						754	24	5	NaN	NaN	NaN	0.00037285	1	18537	83.775	62.624	1	308650			8841	334	7472	7667	8841	8841		
HYLHIIENK	9	Unmodified	_HYLHIIENK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.548741	1165.62439	-0.95229	-0.00037096	1.9166	0.00074662	0.96434	0.00037566	389.549538892994	4.5563	0.14187	4.5563	4.5297	4.6716	0	807	28	0.782101955086014	0.0184231892400387	0.782101955086014	475.44335717295	0	11.199541038295						245	17	4	NaN	NaN	NaN	0.0043598	1	8491	70.67	50.011	1	84782			8842	3036	7473	7668	8842	8842		
HYLHIIENK	9	Unmodified	_HYLHIIENK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.819473	1165.62439	1.8215	0.0010634	-0.43897	-0.00025628	1.3825	0.00080716	583.818992368067	4.5563	0.097548	4.5563	4.5297	4.6273	0	582	25	0.934820374997243	0.0162053462177963	0.934820374997243	378.85822479034	0	6.56760257306678						113	12	2	NaN	NaN	NaN	0.00014931	1	8492	79.059	57.971	1	35975			8843	3036	7473	7668	8843	8843		
HYLSEELR	8	Unmodified	_HYLSEELR_			0	0	0	Q7L2J0	Q7L2J0	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.766906	1045.51926	1.4615	0.0007655	1.7733	0.00092882	3.2349	0.0016943	523.767870902488	4.8401	0.15073	4.8401	4.8135	4.9642	0	627	37	0.90440375274676	0.0243518545960122	0.90440375274676	367.02312977894	0	9.88241574916668						179	18	3	NaN	NaN	NaN	0.0028401	1	5364	75.243	50.393	1	46818			8844	2116	7474	7669	8844	8844		
HYNEEGSQVYNDAHILEK	18	Unmodified	_HYNEEGSQVYNDAHILEK_			0	0	0	Q86U86	Q86U86	Q86U86	PBRM1	Protein polybromo-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.99938	2144.97631	2.0558	0.001472	1.9879	0.0014233	4.0437	0.0028953	716.335802560245	7.3142	0.088673	7.3142	7.2787	7.3674	8.8818E-16	459	37	1.01763759082241	0.0241672134976301	1.01763759082241	615.316293637777	0	14.612746591738						196	11	3	NaN	NaN	NaN	0.0017554	1	33953	76.196	75.389	1	47077			8845	2163	7475	7670	8845	8845		
HYPVFENPK	9	Unmodified	_HYPVFENPK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.785099	1129.55564	2.5212	0.0014264	0.64327	0.00036395	3.1645	0.0017904	565.785283266217	5.0529	0.3458	5.0529	4.8667	5.2125	0	576	49	0.938871150116794	0.0324017225316988	0.938871150116794	380.641947144988	0	13.1364721919331						503	40	3	NaN	NaN	NaN	2.6749E-05	1	7512	137.88	123.12	1	135090			8846	1273	7476	7671	8846	8846		
HYQFASGAFLHIK	13	Unmodified	_HYQFASGAFLHIK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.933254	1517.77793	-0.11294	-5.7252E-05	-0.12643	-6.409E-05	-0.23936	-0.00012134	507.267112169652	9.9307	0.1596	9.9307	9.8598	10.019	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	519.949422359446	0	13.581114527107						312	19	4	NaN	NaN	NaN	0.0085373	1	19070	56.202	49.825	1	109810			8847	2370	7477	7672	8847	8847		
HYTFASGSPDNIK	13	Unmodified	_HYTFASGSPDNIK_			0	0	0	O43660	O43660	O43660	PLRG1	Pleiotropic regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.843873	1435.67319	1.5729	0.0011307	-1.2544	-0.00090169	0.31855	0.00022899	719.345061621095	5.4608	0.13298	5.4608	5.4076	5.5405	0	486	43	0.999498404980629	0.0282379706445135	0.999498404980629	404.178225565223	0	11.418900532296						259	16	3	NaN	NaN	NaN	0.0030263	1	16552	69.276	56.68	1	77683			8848	214	7478	7673	8848	8848		
HYVYGPLPQSFDK	13	Unmodified	_HYVYGPLPQSFDK_			0	0	0	P13073	P13073	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.885541	1549.75653	2.1179	0.0016432	-0.48462	-0.00037601	1.6332	0.0012672	775.885363872161	9.2125	0.19514	9.2125	9.1504	9.3455	0	402	43	1.05585747106793	0.0281134808149035	1.05585747106793	426.668683545324	0	11.3605691846261						562	23	5	NaN	NaN	NaN	2.396E-05	1	20044	110.52	96.723	1	310500			8849	675	7479	7674	8849	8849		
HYYEVSCHDQGLCR	14	Unmodified	_HYYEVSCHDQGLCR_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.591122	1822.75154	1.3233	0.00080534	1.3339	0.00081183	2.6572	0.0016172	608.592144024662	4.3258	0.088674	4.3258	4.2992	4.3879	0	654	28	0.886123392477847	0.0182955837794518	0.886123392477847	536.40434286593	0	11.0750158249667						228	11	5	NaN	NaN	NaN	1.2395E-12	1	27781	159.12	147.44	1	69171			8850	2404	7480	7675	8850	8850		
HYYEVSCHDQGLCR	14	Unmodified	_HYYEVSCHDQGLCR_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.383045	1822.75154	3.1355	0.0028608	0.9791	0.00089331	4.1146	0.0037541	912.886014325762	4.3258	0.07094	4.3258	4.2992	4.3701	0	291	37	1.12999890578964	0.0239912663055373	1.12999890578964	456.022908566206	0	9.68192711053314						184	9	4	NaN	NaN	NaN	0.0001604	1	27782	54.27	39.877	1	36754			8851	2404	7480	7675	8851	8851		
IAAAGLDVTSPEPLPTNHPLLTLK	24	Unmodified	_IAAAGLDVTSPEPLPTNHPLLTLK_			0	0	0	Q9UBQ7	Q9UBQ7	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.463485	2467.36863	0.62121	0.00051155	-0.085676	-7.0551E-05	0.53554	0.00044099	823.797780978691	14.764	0.088697	14.764	14.728	14.817	0	453	58	1.02166545906632	0.0382621221604766	1.02166545906632	617.232612342863	0	23.1158148739565						441	11	5	NaN	NaN	NaN	2.3968E-13	1	36667	84.071	77.684	1	136620			8852	3185	7481	7676	8852	8852		
IAAAILNTPDLR	12	Unmodified	_IAAAILNTPDLR_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.372069	1266.72959	0.69292	0.00043957	0.36961	0.00023447	1.0625	0.00067404	634.372429971733	11.89	0.24832	11.89	11.775	12.024	0	546	85	0.959108205975751	0.0565854300194296	0.959108205975751	388.338407592702	0	22.9111748286399						1091	29	4	NaN	NaN	NaN	1.0288E-16	1	11424	195.58	119.01	1	548730			8853	482	7482	7677	8853	8853		
IAAEIAQAEEQAR	13	Unmodified	_IAAEIAQAEEQAR_			0	0	0	Q969G3	Q969G3	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.36243	1398.71031	1.6231	0.0011367	-0.99326	-0.00069564	0.62982	0.00044111	700.361992439775	7.2432	0.19507	7.2432	7.1723	7.3674	0	513	37	0.981336640919867	0.0242274096445863	0.981336640919867	396.93401056195	0	9.79957587921973						429	23	4	NaN	NaN	NaN	8.6636E-05	1	15410	82.437	73.46	1	115040			8854	2458	7483	7678	8854	8854		
IAAESSENVDCPENPK	16	Unmodified	_IAAESSENVDCPENPK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.393798	1758.77304	3.5002	0.0030816	-5.889	-0.0051846	-2.3887	-0.002103	880.388575377235	4.4056	0.088655	4.4056	4.3701	4.4588	0	414	46	1.04781950764076	0.030165256192159	1.04781950764076	422.974711347198	0	12.1768495791044						301	11	4	NaN	NaN	NaN	0.0037769	1	26099	45.183	37.608	1	78857			8855	1927	7484	7679	8855	8855		
IAAESSENVDCPENPK	16	Unmodified	_IAAESSENVDCPENPK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.393798	1758.77304	3.786	0.0033332	-5.6373	-0.0049631	-1.8514	-0.0016299	880.388559302054	4.4056	0.070925	4.4056	4.3701	4.4411	0	351	34	1.08996939197032	0.0220480903949298	1.08996939197032	439.989411034674	0	8.90018231591648						149	9	3	NaN	NaN	NaN	0.0021613	1	26100	56.938	53.65	1	31104			8856	1927	7484	7679	8856	8856		
IAAIDSLNQYTR	12	Unmodified	_IAAIDSLNQYTR_			0	0	0	Q6YP21	Q6YP21	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.862066	1363.70958	1.2358	0.00084388	0.0093726	6.4002E-06	1.2452	0.00085028	682.862734846033	10.667	0.10639	10.667	10.622	10.729	0	489	37	0.997481546940468	0.0242039733351906	0.997481546940468	403.565702607064	0	9.79255559650153						194	13	3	NaN	NaN	NaN	0.00098809	1	14304	85.622	78.932	1	77495			8857	2098	7485	7680	8857	8857		
IAALQAFADQLIAAGHYAK	19	Unmodified	_IAALQAFADQLIAAGHYAK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.026542	1971.0578	0.31415	0.00020672	-0.62476	-0.00041111	-0.31061	-0.00020439	658.360344806579	18.55	0.17733	18.55	18.506	18.683	0	549	46	0.957085760909907	0.0303366841243174	0.957085760909907	579.031623867806	0	18.3535271223429						592	21	5	NaN	NaN	NaN	0.00061227	1	31132	89.359	85.287	1	301500			8858	1703	7486	7681	8858	8858		
IAAVHNVPLSVLIR	14	Unmodified	_IAAVHNVPLSVLIR_			0	0	0	Q9BYN0	Q9BYN0	Q9BYN0	SRXN1	Sulfiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.311954	1500.91403	-1.4043	-0.00070397	-0.51594	-0.00025865	-1.9202	-0.00096262	501.311821244292	12.857	0.070967	12.857	12.83	12.901	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	480.404199245389	0	9.92153563658388						153	9	3	NaN	NaN	NaN	0.0006359	1	18557	66.953	64.282	1	36451			8859	2803	7487	7682	8859	8859		
IAAYLQSDQFCK	12	Unmodified	_IAAYLQSDQFCK_			0	0	0	P21266	P21266	P21266	GSTM3	Glutathione S-transferase Mu 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.350477	1442.6864	1.7642	0.0012744	-2.2343	-0.0016139	-0.47005	-0.00033954	722.348499307877	9.0706	0.15073	9.0706	8.9908	9.1415	0	465	43	1.01360860968299	0.0282028744341156	1.01360860968299	409.865113738343	0	11.4041793126661						303	18	2	NaN	NaN	NaN	0.00048066	1	16745	74.849	72.177	1	163600			8860	788	7488	7683	8860	8860		
IACLDFSLQK	10	Unmodified	_IACLDFSLQK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.812999	1193.61144	0.32837	0.0001963	1.3264	0.00079294	1.6548	0.00098924	597.813568233494	12.059	0.23945	12.059	12.024	12.263	0	585	40	0.932794566565362	0.0263391634913087	0.932794566565362	377.933531934177	0	10.6716456583953						532	28	4	NaN	NaN	NaN	0.0027467	1	9263	54.436	43.734	1	201070			8861	747	7489	7684	8861	8861		
IADFGLSNMMSDGEFLR	17	Unmodified	_IADFGLSNMMSDGEFLR_			0	0	0	Q13131;P54646	Q13131	Q13131	PRKAA1;PRKAA2	5-AMP-activated protein kinase catalytic subunit alpha-1;5-AMP-activated protein kinase catalytic subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.939861	1901.86517	1.5561	0.0014813	1.901	0.0018096	3.4571	0.003291	951.941693974829	18.39	0.079787	18.39	18.364	18.444	0	252	40	1.15595906938629	0.0259423204238851	1.15595906938629	466.352832475395	0	10.4660060473302						246	10	4	NaN	NaN	NaN	2.2613E-05	1	29639	91.032	85.334	1	41672			8862	1631	7490	7685	8862	8862		
IADFGWSVHAPSLR	14	Unmodified	_IADFGWSVHAPSLR_			0	0	0	Q96GD4	Q96GD4	Q96GD4	AURKB	Aurora kinase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.272047	1554.79431	-0.098142	-5.0962E-05	-1.9583	-0.0010169	-2.0565	-0.0010679	519.271042183079	12.937	0.14189	12.937	12.884	13.026	0	744	34	0.82502364452135	0.0224484086173647	0.82502364452135	500.066991041497	0	13.6065290073818						204	17	3	NaN	NaN	NaN	0.0015254	1	20207	28.228	25.927	1	40344			8863	2540	7491	7686	8863	8863		
IADFQDVLK	9	Unmodified	_IADFQDVLK_			0	0	0	Q9NVG8	Q9NVG8	Q9NVG8	TBC1D13	TBC1 domain family member 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.787307	1047.56006	-0.88718	-0.00046558	-1.299	-0.00068167	-2.1861	-0.0011473	524.786836374964	11.82	0.097557	11.82	11.775	11.873	0	714	31	0.845418525735192	0.0203778832072955	0.845418525735192	343.077201535185	0	8.26949839771976						152	12	2	NaN	NaN	NaN	0.0018514	1	5411	67.464	41.007	1	48644			8864	3064	7492	7687	8864	8864		
IADGYEQAAR	10	Unmodified	_IADGYEQAAR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.26727	1092.51999	2.0805	0.0011386	-8.6104	-0.0047122	-6.5299	-0.0035736	547.262070952067	3.7317	0.17733	3.7317	3.6874	3.8647	0	651	43	0.888155670855968	0.028445983405885	0.888155670855968	360.227801029404	0	11.537430190076						348	21	4	NaN	NaN	NaN	0.00085523	1	6516	61.48	45.898	1	281400			8865	1113	7493	7688	8865	8865		
IADGYEQAAR	10	Unmodified	_IADGYEQAAR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.26727	1092.51999	1.5505	0.00084852	-0.55031	-0.00030117	1.0002	0.00054736	547.266777899526	3.714	0.13298	3.714	3.6785	3.8115	0	696	43	0.857641857947968	0.028505272317873	0.857641857947968	347.851643158792	0	11.5614760666947						409	16	4	NaN	NaN	NaN	0.0010791	1	6518	81.163	64.706	1	212780			8866	1113	7493	7688	8866	8866		
IADLGNACWVHK	12	Unmodified	_IADLGNACWVHK_			0	0	0	P78362;Q9UPE1;Q96SB4	P78362;Q96SB4	Q96SB4	SRPK2;SRPK3;SRPK1	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal;SRSF protein kinase 3;SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.345529	1382.6765	1.8057	0.0012502	0.44666	0.00030925	2.2524	0.0015594	692.345732615546	8.1745	0.09752	8.1745	8.1479	8.2454	0	438	28	1.03173026378327	0.0181091469845289	1.03173026378327	417.364740108096	0	7.32567386078438						243	12	4	NaN	NaN	NaN	0.042456	1	14904	40.386	24.507	1	64491			8867	2621;1460	7494	7689	8867	8867		
IADMGHLK	8	Unmodified	_IADMGHLK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.736563	883.458573	0.040727	1.8031E-05	0.3588	0.00015886	0.39953	0.00017689	442.738077931445	3.6431	0.25708	3.6431	3.5544	3.8115	0	741	52	0.827064408645228	0.0346833569079855	0.827064408645228	336.436482954042	0	14.1086310729734						723	30	3	NaN	NaN	NaN	0.017666	1	2055	42.835	28.072	1	254880			8868	662	7495	7690	8868	8868		
IADPTLAEMGK	11	Unmodified	_IADPTLAEMGK_			0	0	0	Q6P996;Q6P474	Q6P996	Q6P996	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.297181	1144.57981	0.89894	0.00051536	2.4274	0.0013916	3.3264	0.001907	573.297913184963	8.0591	0.16863	8.0591	7.9527	8.1213	0	630	52	0.902373728295776	0.0345200008308083	0.902373728295776	365.78705887379	0	13.9930598379337						385	20	3	NaN	NaN	NaN	0.0051384	1	7920	64.064	50.07	1	142280			8869	2069	7496	7691	8869	8869		
IADQFLGAMYTLPR	14	Unmodified	_IADQFLGAMYTLPR_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.416151	1594.81775	1.1562	0.00092316	1.2265	0.00097923	2.3827	0.0019024	798.417166468483	16.218	0.088657	16.218	16.174	16.262	0	243	43	1.16194328902838	0.0279282839901285	1.16194328902838	469.420130502397	0	11.2829075559417						294	11	4	NaN	NaN	NaN	0.003448	1	21433	46.358	36.108	1	79411			8870	257	7497	7692	8870	8870		
IADSIGCSTNNILFLTDVTR	20	Unmodified	_IADSIGCSTNNILFLTDVTR_			0	0	0	Q9UHY7	Q9UHY7	Q9UHY7	ENOPH1	Enolase-phosphatase E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.55972	2209.10488	0.43733	0.00048349	-0.91352	-0.00101	-0.47619	-0.00052646	1106.06042252243	17.344	0.10639	17.344	17.291	17.397	0	123	79	1.24149774378079	0.0515333530779845	1.24149774378079	500.357183919924	0	20.7693357102099						669	13	4	NaN	NaN	NaN	0.0020797	1	34780	36.059	33.313	1	168630			8871	3227	7498	7693	8871	8871		
IAEAVPGR	8	Unmodified	_IAEAVPGR_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.734877	811.455202	-0.71125	-0.00028929	0.65498	0.0002664	-0.056266	-2.2886E-05	406.735219113238	3.6962	0.088634	3.6962	3.6608	3.7494	0	873	22	0.737001551771189	0.014371140956013	0.737001551771189	300.206975947231	0	5.85387745378245						83	11	2	NaN	NaN	NaN	0.062251	1	1105	38.322	17.664	1	17852			8872	2649	7499	7694	8872	8872		
IAEESNFPFIK	11	Unmodified	_IAEESNFPFIK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.837528	1293.6605	1.8414	0.0011929	-2.2198	-0.001438	-0.37837	-0.00024513	647.835884120638	12.901	0.3015	12.901	12.751	13.052	0	555	40	0.953040030838688	0.0262954306323098	0.953040030838688	385.794799334016	0	10.6445060605336						569	35	3	NaN	NaN	NaN	0.00067762	1	12185	67.881	57.179	1	143840			8873	1082	7500	7695	8873	8873		
IAEFTTNLTEEEEK	14	Unmodified	_IAEFTTNLTEEEEK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.396332	1652.77811	3.6541	0.0030234	0.22025	0.00018224	3.8743	0.0032056	827.397257054349	9.8243	0.38127	9.8243	9.6647	10.046	0	351	103	1.08996939197032	0.0681628145197419	1.08996939197032	440.210012718658	0	27.529170697568						1404	44	5	NaN	NaN	NaN	6.6098E-33	1	23127	252.69	208.09	1	620850			8874	972	7501	7696	8874	8874		
IAEGAQQGDPLSR	13	Unmodified	_IAEGAQQGDPLSR_			0	0	0	Q9UJ70	Q9UJ70	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.341498	1340.66844	1.528	0.0010258	-2.3652	-0.0015878	-0.83716	-0.00056202	671.34137239775	5.2125	0.13304	5.2125	5.1681	5.3012	0	525	28	0.973257487423603	0.0181818689972096	0.973257487423603	393.832932375394	0	7.35737343484698						168	16	2	NaN	NaN	NaN	0.010083	1	13614	39.702	29.452	1	58735			8875	3244	7502	7697	8875	8875		
IAEIEAEMAR	10	Unmodified	_IAEIEAEMAR_			0	0	0	Q9Y295	Q9Y295	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.786981	1131.55941	1.7358	0.00098384	0.4924	0.00027909	2.2282	0.0012629	566.787564954139	7.6422	0.12418	7.6422	7.6068	7.7309	0	603	31	0.920633820089869	0.0202763400038137	0.920633820089869	373.240106612019	0	8.22036203708689						217	15	3	NaN	NaN	NaN	0.013739	1	7575	50.834	29.56	1	62481			8876	3339	7503	7698	8876	8876		
IAELLENVTLIHK	13	Unmodified	_IAELLENVTLIHK_			0	0	0	Q14694	Q14694	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.940316	1491.86608	1.4654	0.0010946	0.21746	0.00016243	1.6829	0.001257	746.940445320457	13.611	0.11527	13.611	13.567	13.682	0	375	28	1.07392668217569	0.0180567582356488	1.07392668217569	434.119470526446	0	7.29918574031808						272	14	4	NaN	NaN	NaN	1.7272E-05	1	18310	103.69	99.158	1	101070			8877	1769	7504	7699	8877	8877		
IAELLSPGSVDPLTR	15	Unmodified	_IAELLSPGSVDPLTR_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.438138	1566.86172	2.2511	0.0017658	1.5327	0.0012023	3.7838	0.0029682	784.941349773045	14.498	0.43451	14.498	14.391	14.826	0	369	79	1.07793901817685	0.0521604096474584	1.07793901817685	435.549650270834	0	21.0758195007713						677	50	2	NaN	NaN	NaN	0.00012577	1	20567	95.138	70.449	1	917890			8878	961	7505	7700	8878	8878		
IAELSEDDQK	10	Unmodified	_IAELSEDDQK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.2775	1146.54045	2.3016	0.0013217	1.8718	0.0010749	4.1734	0.0023967	574.27811084797	3.9622	0.21283	3.9622	3.909	4.1219	0	612	37	0.914549654013882	0.0243484786239944	0.914549654013882	370.715159546557	0	9.86972123185888						243	25	3	NaN	NaN	NaN	0.0045502	1	7965	69.915	43.458	1	91093			8879	2808	7506	7701	8879	8879		
IAENLGDVQISDK	13	Unmodified	_IAENLGDVQISDK_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.364638	1400.71472	1.603	0.0011243	-1.5299	-0.001073	0.073106	5.1274E-05	701.363546856637	9.0351	0.23936	9.0351	8.9021	9.1415	0	480	37	1.00353128488872	0.0241939396115666	1.00353128488872	405.905683040232	0	9.78590077992038						271	28	2	NaN	NaN	NaN	2.865E-05	1	15472	130.99	107.16	1	140590			8880	2839	7507	7702	8880	8880		
IAEQVASFQEEK	12	Unmodified	_IAEQVASFQEEK_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.846081	1377.67761	1.635	0.0011279	-1.93	-0.0013314	-0.29506	-0.00020355	689.845973729111	6.8441	0.1596	6.8441	6.7909	6.9505	0	504	34	0.987393073566096	0.0222007820488888	0.987393073566096	399.443421965321	0	8.9811814456898						374	19	4	NaN	NaN	NaN	2.2805E-05	1	14735	117.45	94.549	1	123880			8881	959	7508	7703	8881	8881		
IAEVDCTAER	10	Unmodified	_IAEVDCTAER_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.271695	1162.52884	2.0697	0.0012051	-1.0419	-0.00060668	1.0278	0.00059846	582.271016820014	3.714	0.22172	3.714	3.6696	3.8914	0	651	88	0.888155670855968	0.0588707685122962	0.888155670855968	359.957452845262	0	23.859524378543						551	26	2	NaN	NaN	NaN	1.1929E-05	1	8400	105.36	96.595	1	297500			8882	2294	7509	7704	8882	8882		
IAEVGGVPYLLPLVNQK	17	Unmodified	_IAEVGGVPYLLPLVNQK_			0	0	0	Q9H0W9	Q9H0W9	Q9H0W9	C11orf54	Ester hydrolase C11orf54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.527287	1809.04002	1.4853	0.001345	-0.42545	-0.00038526	1.0599	0.00095976	906.028306590818	17.681	0.12415	17.681	17.628	17.752	0	282	37	1.13599383354359	0.0239780653182871	1.13599383354359	458.468467859972	0	9.67715364653833						390	15	4	NaN	NaN	NaN	0.00015452	1	27462	55.578	51.272	1	101150			8883	2852	7510	7705	8883	8883		
IAFAITAIK	9	Unmodified	_IAFAITAIK_			0	0	0	P62269	P62269	P62269	RPS18	40S ribosomal protein S18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.299853	946.585153	-0.26308	-0.00012478	-1.4633	-0.00069405	-1.7264	-0.00081882	474.299127102843	12.724	0.20396	12.724	12.662	12.866	0	741	61	0.827064408645228	0.0407897772033428	0.827064408645228	336.093022664336	0	16.5756854856475						862	24	4	NaN	NaN	NaN	0.0087065	1	3187	77.072	23.392	1	529380			8884	1378	7511	7706	8884	8884		
IAFIAWK	7	Unmodified	_IAFIAWK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	424.755082	847.49561	-2.3108	-0.00098152	-1.4582	-0.0006194	-3.769	-0.0016009	424.754771820472	13.061	0.088664	13.061	13.017	13.105	0	846	22	0.755468431110051	0.014355121376784	0.755468431110051	307.511816960952	0	5.84322160329526						114	11	2	NaN	NaN	NaN	0.056691	1	1525	31.058	18.505	1	27788			8885	2005	7512	7707	8885	8885		
IAFIMDESNVLDSGFLER	18	Unmodified	_IAFIMDESNVLDSGFLER_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.50642	2054.99829	0.49613	0.00051027	0.66424	0.00068317	1.1604	0.0011934	1029.00855502288	19.038	0.070941	19.038	19.011	19.082	0	126	55	1.23951419873743	0.0357209598237578	1.23951419873743	499.791814869967	0	14.4032584357632						312	9	4	NaN	NaN	NaN	3.7054E-07	1	32623	93.649	87.127	1	56867			8886	1737	7513	7708	8886	8886		
IAFPSANEVFYNPVQEFNR	19	Unmodified	_IAFPSANEVFYNPVQEFNR_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.55001	2241.08547	1.241	0.0013919	-0.92681	-0.0010395	0.31421	0.0003524	1121.54870589705	17.681	0.18618	17.681	17.619	17.805	0	108	79	1.25141139212444	0.0515051196173328	1.25141139212444	504.30766955647	0	20.7561054725172						639	22	4	NaN	NaN	NaN	5.1618E-05	1	35108	48.892	47.797	1	134670			8887	3104	7514	7709	8887	8887		
IAFSSTSLLK	10	Unmodified	_IAFSSTSLLK_			0	0	0	Q9Y305	Q9Y305	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.810782	1065.60701	0.27163	0.000145	-5.2155	-0.0027841	-4.9438	-0.0026391	533.807802044853	11.429	0.15964	11.429	11.367	11.527	0	651	34	0.888155670855968	0.0223550653870297	0.888155670855968	360.341074431356	0	9.06986077427388						263	19	3	NaN	NaN	NaN	0.053768	1	5867	32.14	26.832	1	75745			8888	3361	7515	7710	8888	8888		
IAFTEWIEPPKR	12	Unmodified	_IAFTEWIEPPKR_			0	0	1	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.273276	1485.798	-2.4049	-0.0011935	0.43299	0.00021488	-1.9719	-0.00097859	496.273405718434	13.15	0.22168	13.15	13.017	13.238	0	792	22	0.792332785124922	0.0143171820587036	0.792332785124922	480.44878878446	0	8.68154506294496						294	26	3	NaN	NaN	NaN	0.016137	1	18106	41.824	38.216	1	62389			8889	251	7516	7711	8889	8889		
IAFWDDVYGFK	11	Unmodified	_IAFWDDVYGFK_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.832246	1359.64994	-0.088209	-6.0055E-05	0.31698	0.00021581	0.22877	0.00015575	680.832475676732	17.078	0.15959	17.078	17.025	17.184	0	513	37	0.981336640919867	0.0242274096445863	0.981336640919867	397.045616333231	0	9.8023312219093						366	19	3	NaN	NaN	NaN	0.0057291	1	14178	40.386	37.508	1	117850			8890	273	7517	7712	8890	8890		
IAGAIGPCVSLNVK	14	Unmodified	_IAGAIGPCVSLNVK_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.892312	1397.77007	1.3902	0.00097302	-0.24334	-0.00017031	1.1469	0.00080271	699.892327239738	11.128	0.08868	11.128	11.092	11.181	0	474	25	1.00756305028564	0.0161248344128324	1.00756305028564	407.54482857107	0	6.52226466090804						169	11	3	NaN	NaN	NaN	0.05156	1	15388	19.557	17.077	1	46188			8891	1851	7518	7713	8891	8891		
IAGDYVSEEVWYR	13	Unmodified	_IAGDYVSEEVWYR_			0	0	0	O95782;O94973	O95782;O94973	O95782	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.877913	1585.74127	1.5559	0.0012352	0.61256	0.0004863	2.1685	0.0017215	793.878512717553	12.334	0.13299	12.334	12.281	12.414	0	408	37	1.0518390438467	0.0241172212531353	1.0518390438467	424.959427328665	0	9.74373464499837						364	16	4	NaN	NaN	NaN	0.0015925	1	21123	71.066	53.335	1	110080			8892	452;399	7519	7714	8892	8892		
IAGQVAAANK	10	Unmodified	_IAGQVAAANK_			0	0	0	P39019	P39019	P39019	RPS19	40S ribosomal protein S19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.771991	941.529429	-0.38097	-0.00017973	1.4383	0.00067856	1.0573	0.00049882	471.77271236046	2.2951	0.22168	2.2951	2.2685	2.4902	0	795	25	0.790287188799094	0.0163659109219131	0.790287188799094	321.172579911221	0	6.65110343162138						173	26	2	NaN	NaN	NaN	0.0075583	1	3089	47.349	28.946	1	31898			8893	1009	7520	7715	8893	8893		
IAGYVTHLMK	10	Unmodified	_IAGYVTHLMK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.812802	1131.61105	2.1631	0.0012261	0.034086	1.9321E-05	2.1971	0.0012454	566.81329409521	7.2964	0.32805	7.2964	7.2432	7.5713	0	561	79	0.948993180460448	0.0526528256278209	0.948993180460448	384.737248960238	0	21.3463106997272						1090	38	5	NaN	NaN	NaN	0.0033936	1	7583	86.205	60.951	1	1086200			8894	589	7521	7716	8894	8894		
IAHFLDR	7	Unmodified	_IAHFLDR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.24287	870.471186	-0.7024	-0.00030642	-0.050951	-2.2227E-05	-0.75335	-0.00032864	436.242737108745	5.0883	0.16845	5.0883	5.0351	5.2036	0	756	37	0.816857749704129	0.024501095294577	0.816857749704129	332.360413462648	0	9.96892563649277						246	20	3	NaN	NaN	NaN	0.021356	1	1868	63.301	38.482	1	83822			8895	1304	7522	7717	8895	8895		
IAILGFAFK	9	Unmodified	_IAILGFAFK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.302396	978.590239	-1.0128	-0.0004966	-0.53515	-0.00026238	-1.548	-0.00075898	490.302026213102	17.53	0.18621	17.53	17.477	17.663	0	723	40	0.839303037468863	0.0265078208425806	0.839303037468863	340.906722319757	0	10.7669029133219						436	22	4	NaN	NaN	NaN	0.038911	1	3818	29.102	0	1	250260			8896	275	7523	7718	8896	8896		
IAILTCPFEPPKPK	14	Unmodified	_IAILTCPFEPPKPK_			0	0	1	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.637338	1609.89019	-0.87995	-0.00047309	-1.2758	-0.00068589	-2.1557	-0.001159	537.636760638869	11.882	0.48779	11.882	11.518	12.006	0	744	97	0.82502364452135	0.065281839070939	0.82502364452135	499.916090547539	0	39.5569775349061						1952	56	5	NaN	NaN	NaN	0.00015095	1	21898	101.45	91.195	1	761810			8897	1113	7524	7719	8897	8897		
IAILTCPFEPPKPK	14	Unmodified	_IAILTCPFEPPKPK_			0	0	1	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.952369	1609.89019	1.8213	0.0014679	0.22334	0.00018	2.0446	0.0016479	805.952451437599	11.89	0.29263	11.89	11.678	11.97	0	267	76	1.14597988355104	0.0499371538919759	1.14597988355104	462.93366704037	0	20.1727710098518						1490	34	4	NaN	NaN	NaN	1.9625E-06	1	21899	135.28	125.03	1	327230			8898	1113	7524	7719	8898	8898		
IAIPGLAGAGNSVLLVSNLNPER	23	Unmodified	_IAIPGLAGAGNSVLLVSNLNPER_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.097136	2274.26958	0.83273	0.00063212	-0.78161	-0.00059332	0.051119	3.8804E-05	759.430467398253	18.656	0.088678	18.656	18.603	18.692	0	399	34	1.0578662689527	0.0220967798859319	1.0578662689527	639.406841715667	0	13.3559719726557						207	11	4	NaN	NaN	NaN	0.0047583	1	35412	52.662	50.115	1	66499			8899	856	7525	7720	8899	8899		
IAIPGLAGAGNSVLLVSNLNPER	23	Unmodified	_IAIPGLAGAGNSVLLVSNLNPER_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1138.14207	2274.26958	0.46235	0.00052623	-0.055137	-6.2754E-05	0.40722	0.00046347	1138.64339619103	18.648	0.16847	18.648	18.559	18.727	0	78	73	1.27121832677567	0.0475171415249036	1.27121832677567	512.24362417098	0	19.147263906035						1064	20	5	NaN	NaN	NaN	3.015E-09	1	35413	73.345	68.511	1	319880			8900	856	7525	7720	8900	8900		
IAIPGLAGAGNSVLLVSNLNPER	23	Unmodified	_IAIPGLAGAGNSVLLVSNLNPER_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.097136	2274.26958	0.85246	0.0006471	0.4036	0.00030637	1.2561	0.00095347	759.43159152009	18.639	0.21282	18.639	18.532	18.745	0	453	49	1.02166545906632	0.0322274067567843	1.02166545906632	617.525956673225	0	19.4792336493081						710	25	5	NaN	NaN	NaN	5.1174E-13	1	35414	153.05	152.74	1	312910			8901	856	7525	7720	8901	8901		
IAIYELLFK	9	Unmodified	_IAIYELLFK_			0	0	0	P46783	P46783	P46783	RPS10	40S ribosomal protein S10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.333893	1108.65323	0.094707	5.2594E-05	0.02876	1.5971E-05	0.12347	6.8566E-05	555.333967483717	18.568	0.32807	18.568	18.523	18.851	0	645	67	0.892219381832517	0.0446822477654109	0.892219381832517	361.810371425957	0	18.1194233047771						1155	38	5	NaN	NaN	NaN	0.0002714	1	6964	98.009	70.273	1	1960000			8902	1091	7526	7721	8902	8902		
IALESEGRPEEQMESDNCSGGDDDWTHLSSK	31	Unmodified	_IALESEGRPEEQMESDNCSGGDDDWTHLSSK_			0	0	1	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	870.620407	3478.45252	1.794	0.0015619	-0.059594	-5.1884E-05	1.7344	0.00151	871.122003741903	9.8776	0.062066	9.8776	9.8509	9.913	0	546	118	0.959108205975751	0.078984788203836	0.959108205975751	771.325591396465	0	63.520453785158						725	8	5	NaN	NaN	NaN	8.9132E-10	1	38645	58.206	58.196	1	147930			8903	1673	7527	7722	8903	8903		
IALGIPLPEIK	11	Unmodified	_IALGIPLPEIK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.373549	1162.73255	0.59179	0.00034464	-1.2318	-0.00071737	-0.64001	-0.00037273	582.372823451797	16.652	0.43454	16.652	16.51	16.945	0	543	151	0.961130371139249	0.101325813256618	0.961130371139249	389.532310268668	0	41.065894193852						3966	50	5	NaN	NaN	NaN	0.00014089	1	8424	92.732	83.969	1	3950600			8904	922	7528	7723	8904	8904		
IALHTALNNPYYYLK	15	Unmodified	_IALHTALNNPYYYLK_			0	0	0	Q9UBD5	Q9UBD5	Q9UBD5	ORC3	Origin recognition complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.657678	1792.95121	-0.44768	-0.00026801	0.21818	0.00013062	-0.2295	-0.00013739	598.992102837067	12.52	0.10642	12.52	12.485	12.591	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	537.701962721179	0	9.8422777533525						213	13	4	NaN	NaN	NaN	0.041446	1	27050	35.33	33.619	1	47586			8905	3171	7529	7724	8905	8905		
IALLEEAK	8	Unmodified	_IALLEEAK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.765843	885.517133	-1.1179	-0.00049608	0.56178	0.0002493	-0.55611	-0.00024678	443.766180066143	8.3076	0.14198	8.3076	8.2366	8.3785	0	750	25	0.820941264895493	0.0163295196874556	0.820941264895493	333.93380891194	0	6.64234938613868						179	17	2	NaN	NaN	NaN	0.012201	1	2085	49.325	24.474	1	48434			8906	962	7530	7725	8906	8906		
IALLNVELELK	11	Unmodified	_IALLNVELELK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.887021	1253.75949	-0.04691	-2.9454E-05	0.17123	0.00010751	0.12432	7.8059E-05	627.887180430511	16.777	0.16846	16.777	16.732	16.901	0	504	46	0.987393073566096	0.0302737974651172	0.987393073566096	399.835416675582	0	12.2590858168574						506	20	4	NaN	NaN	NaN	0.00085901	1	11045	62.271	52.183	1	195500			8907	2679	7531	7726	8907	8907		
IALLPLLQAETDR	13	Unmodified	_IALLPLLQAETDR_			0	0	0	Q9P0J0	Q9P0J0	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.924666	1451.83478	0.54024	0.00039271	-1.6233	-0.00118	-1.0831	-0.00078731	726.922720043007	17.894	0.17731	17.894	17.787	17.965	0	441	31	1.02971785871157	0.0201254424104516	1.02971785871157	416.354164582285	0	8.13748318606127						279	21	3	NaN	NaN	NaN	0.0056894	1	17039	66.664	62.137	1	62671			8908	3145	7532	7727	8908	8908		
IALTDNALIAR	11	Unmodified	_IALTDNALIAR_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.845687	1169.67682	1.69	0.0009901	-0.70001	-0.0004101	0.99003	0.00058	585.846076908899	11.119	0.28377	11.119	11.057	11.341	0	579	64	0.936845902828289	0.0425478933681714	0.936845902828289	379.663735719467	0	17.242848684491						784	33	5	NaN	NaN	NaN	2.3929E-05	1	8611	139.02	99.696	1	1277900			8909	752	7533	7728	8909	8909		
IALYETPTGWK	11	Unmodified	_IALYETPTGWK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.840071	1277.66559	1.3181	0.00084339	0.28379	0.00018158	1.6019	0.001025	639.840399389804	11.447	0.23064	11.447	11.358	11.589	0	528	40	0.971237000454584	0.0262699700789047	0.971237000454584	393.212998577557	0	10.6356056270859						565	27	4	NaN	NaN	NaN	0.0015257	1	11700	78.816	70.053	1	187830			8910	991	7534	7729	8910	8910		
IAMENDDGRTEEEK	14	Unmodified	_IAMENDDGRTEEEK_			0	0	1	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.242153	1635.70463	0.54844	0.00029958	0.78464	0.0004286	1.3331	0.00072819	546.242620850957	2.969	0.11528	2.969	2.9513	3.0666	0	738	31	0.829104889055312	0.020406225036543	0.829104889055312	502.321519965237	0	12.3633162853358						185	14	3	NaN	NaN	NaN	0.0046082	1	22646	48.701	36.105	1	42008			8911	2391	7535	7730	8911	8911		
IANAIMK	7	Unmodified	_IANAIMK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	380.722924	759.431295	-0.47383	-0.0001804	-1.1619	-0.00044235	-1.6357	-0.00062275	380.722422736507	4.2637	0.097546	4.2637	4.2283	4.3258	0	888	22	0.726732155490709	0.0143811668140997	0.726732155490709	296.360355206116	0	5.86461968567659						80	12	2	NaN	NaN	NaN	0.065843	1	684	35.633	17.939	1	15432			8912	571	7536	7731	8912	8912		
IANDNSLNHEYLPILGLAEFR	21	Unmodified	_IANDNSLNHEYLPILGLAEFR_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.416646	2398.22811	0.41862	0.00033507	-1.0652	-0.00085259	-0.64656	-0.00051752	800.750057843631	18.311	0.16846	18.311	18.222	18.39	0	558	64	0.951016745717027	0.0425125486397032	0.951016745717027	574.643388923727	0	25.6878284553076						833	20	5	NaN	NaN	NaN	5.1511E-06	1	36334	68.42	67.722	1	222020			8913	736	7537	7732	8913	8913		
IANDNSLNHEYLPILGLAEFR	21	Unmodified	_IANDNSLNHEYLPILGLAEFR_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.416646	2398.22811	0.99103	0.00079324	0.87178	0.00069778	1.8628	0.001491	800.751726876931	18.293	0.133	18.293	18.222	18.355	0	366	22	1.07994477139643	0.0140402733373235	1.07994477139643	652.546991574839	0	8.48370988019315						291	16	4	NaN	NaN	NaN	3.6556E-06	1	36335	50.131	48.507	1	67183			8914	736	7537	7732	8914	8914		
IANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGK	38	Unmodified	_IANEVIGEMNLKPEEVFLAQGTLRPDLIESASLVASGK_			0	0	2	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1010.54096	4038.13473	0.76949	0.0007776	-0.12165	-0.00012293	0.64784	0.00065467	1011.04290049079	19.534	0.053184	19.534	19.508	19.561	0	429	22	1.03776581230406	0.0140790597417815	1.03776581230406	834.121727021807	0	11.3162810794321						71	7	3	NaN	NaN	NaN	0.02222	1	38767	13.315	13.229	1	14061			8915	1155	7538	7733	8915	8915		
IANLQTDLSDGLR	13	Unmodified	_IANLQTDLSDGLR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.37808	1414.74161	1.6002	0.0011335	1.1311	0.00080123	2.7312	0.0019347	708.378736965754	11.58	0.22173	11.58	11.527	11.749	0	435	52	1.03374239103424	0.034210897957768	1.03374239103424	418.084851403913	0	13.836191988565						544	26	3	NaN	NaN	NaN	2.4403E-05	1	15934	88.24	70.77	1	300880			8916	792	7539	7734	8916	8916		
IANPDQLLTQDVEK	14	Unmodified	_IANPDQLLTQDVEK_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.417402	1582.82025	1.5483	0.0012269	1.1186	0.00088636	2.6669	0.0021133	792.417602530293	11.758	0.19508	11.758	11.66	11.855	0	375	67	1.07392668217569	0.0441296375038467	1.07392668217569	433.890109100997	0	17.8293486407661						750	23	4	NaN	NaN	NaN	0.0014287	1	21062	58.338	48.087	1	194880			8917	876	7540	7735	8917	8917		
IANPVEGSSGR	11	Unmodified	_IANPVEGSSGR_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.780544	1085.54654	1.7823	0.00096916	-0.097433	-5.2982E-05	1.6848	0.00091618	543.780959511739	4.0332	0.38124	4.0332	3.8914	4.2726	0	702	58	0.853568545818287	0.0386830482418505	0.853568545818287	346.227240388869	0	15.6907434185802						1182	44	3	NaN	NaN	NaN	0.00054833	1	6348	94.804	80.041	1	427870			8918	1833	7541	7736	8918	8918		
IANPVEGSTDR	11	Unmodified	_IANPVEGSTDR_			0	0	0	Q15366	Q15366	Q15366	PCBP2	Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.791109	1157.56767	1.6972	0.000984	0.72443	0.00042002	2.4216	0.001404	579.792412399049	4.5652	0.42561	4.5652	4.3524	4.778	0	645	139	0.892219381832517	0.093517479071497	0.892219381832517	361.622582605819	0	37.9032701925416						1284	49	4	NaN	NaN	NaN	0.00071255	1	8269	62.271	55.121	1	884330			8919	1834	7542	7737	8919	8919		
IAPAFSSMSNK	11	Unmodified	_IAPAFSSMSNK_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.789524	1151.56449	0.86788	0.00050058	-0.91859	-0.00052983	-0.050714	-2.9251E-05	576.789677661783	6.7377	0.17732	6.7377	6.6845	6.8619	0	615	43	0.912521036363781	0.0284104988036308	0.912521036363781	369.873687810707	0	11.5156753064171						384	21	3	NaN	NaN	NaN	0.0066007	1	8109	65.404	49.822	1	101020			8920	198	7543	7738	8920	8920		
IAPELYHK	8	Unmodified	_IAPELYHK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.77146	969.528367	1.2956	0.00062938	0.054715	2.6579E-05	1.3504	0.00065596	485.771812011463	4.1928	0.25715	4.1928	4.1484	4.4056	0	693	37	0.85967808974117	0.0244364826116721	0.85967808974117	349.227850689546	0	9.92685564832306						503	30	4	NaN	NaN	NaN	0.01958	1	3625	36.57	6.008	1	221060			8921	1801	7544	7739	8921	8921		
IAPLAEGALPYNLAELQR	18	Unmodified	_IAPLAEGALPYNLAELQR_			0	0	0	O75746	O75746	O75746	SLC25A12	Calcium-binding mitochondrial carrier protein Aralar1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.036007	1938.05746	1.3271	0.0012874	0.27514	0.0002669	1.6023	0.0015542	970.537743957057	16.448	0.079813	16.448	16.413	16.493	0	195	43	1.19381749893585	0.0278554821353485	1.19381749893585	481.561057683967	0	11.2363199997926						267	10	4	NaN	NaN	NaN	3.2088E-07	1	30477	86.729	72.366	1	53375			8922	356	7545	7740	8922	8922		
IAPLEEGTLPFNLAEAQR	18	Unmodified	_IAPLEEGTLPFNLAEAQR_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.023097	1968.03164	1.2413	0.0012227	-0.94883	-0.00093462	0.29244	0.00028807	985.524905715116	16.395	0.3192	16.395	16.2	16.519	0	195	88	1.19381749893585	0.0576967248444535	1.19381749893585	481.508913830578	0	23.2711342698516						1423	37	5	NaN	NaN	NaN	0.0011773	1	31079	59.67	54.854	1	538020			8923	3248	7546	7741	8923	8923		
IAPQYYDMSNFPQCEAK	17	Unmodified	_IAPQYYDMSNFPQCEAK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.45588	2060.8972	1.9392	0.0020002	0.38433	0.00039642	2.3236	0.0023966	1031.95810592309	11.252	0.097554	11.252	11.199	11.296	0	171	28	1.20972836110953	0.0178911243069704	1.20972836110953	487.772322793085	0	7.21384696031004						216	12	3	NaN	NaN	NaN	1.9372E-06	1	32716	69.201	67.726	1	39905			8924	181	7547	7742	8924	8924		
IAPQYYDMSNFPQCEAK	17	Unmodified	_IAPQYYDMSNFPQCEAK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.45588	2060.8972	1.9387	0.0019996	1.5641	0.0016133	3.5028	0.003613	1031.95969053744	11.172	0.12415	11.172	11.092	11.216	0	174	28	1.20774045859593	0.0178935796740805	1.20774045859593	486.970780468771	0	7.21483692729578						188	15	3	NaN	NaN	NaN	0.006567	1	32717	40.224	37.835	1	36226			8925	181	7547	7742	8925	8925		
IAPSFAVESIEDALK	15	Unmodified	_IAPSFAVESIEDALK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.424696	1588.83484	1.7623	0.0014018	2.8036	0.0022301	4.5659	0.0036318	795.426853041833	18.107	0.3724	18.107	18.027	18.399	0	363	241	1.08195024817156	0.159920950955167	1.08195024817156	437.117447828396	0	64.6094753931131						3769	43	6	NaN	NaN	NaN	2.1715E-12	1	21256	201.66	167.94	1	3654400			8926	922	7548	7743	8926	8926		
IAPVENDNSYDELK	14	Unmodified	_IAPVENDNSYDELK_			0	0	0	Q14997	Q14997	Q14997	PSME4	Proteasome activator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.883392	1605.75223	2.5262	0.0020307	-1.4564	-0.0011708	1.0698	0.00085999	803.882892734484	7.7842	0.19519	7.7842	7.6777	7.8729	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.215051479474	0	7.29744349718777						236	23	3	NaN	NaN	NaN	0.065545	1	21771	40.861	34.484	1	57069			8927	1783	7549	7744	8927	8927		
IAPVHIDSEAISALVK	16	Unmodified	_IAPVHIDSEAISALVK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.985684	1661.93522	-0.65688	-0.00036456	-1.5653	-0.00086871	-2.2222	-0.0012333	554.984451297052	13.983	0.088668	13.983	13.957	14.045	0	693	22	0.85967808974117	0.0142516439925704	0.85967808974117	520.775648664635	0	8.63335850167232						163	11	3	NaN	NaN	NaN	0.035003	1	23405	23.149	19.644	1	52962			8928	1921	7550	7745	8928	8928		
IAPVHIDSEAISALVK	16	Unmodified	_IAPVHIDSEAISALVK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.974887	1661.93522	2.2645	0.001884	0.26849	0.00022338	2.533	0.0021074	831.974896401945	13.983	0.10639	13.983	13.948	14.054	0	288	46	1.13199748998575	0.0299828961966486	1.13199748998575	457.163115453472	0	12.1087496720073						350	13	3	NaN	NaN	NaN	3.162E-06	1	23407	97.594	90.847	1	147190			8929	1921	7550	7745	8929	8929		
IAPVHIDTESISALIK	16	Unmodified	_IAPVHIDTESISALIK_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.661089	1705.96144	-0.38661	-0.00022024	-1.3674	-0.00077898	-1.754	-0.00099921	569.660318816112	15.003	0.097544	15.003	14.959	15.056	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	526.828296884425	0	11.0915045512176						237	12	4	NaN	NaN	NaN	0.00011085	1	24664	62.454	57.926	1	74810			8930	3041	7551	7746	8930	8930		
IAPVHIDTESISALIK	16	Unmodified	_IAPVHIDTESISALIK_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.661089	1705.96144	-1.1484	-0.00065418	-0.60284	-0.00034341	-1.7512	-0.0009976	569.660862993441	14.994	0.062079	14.994	14.967	15.03	0	717	22	0.84338031290707	0.0142674906232585	0.84338031290707	510.793875843328	0	8.64111566570983						96	8	3	NaN	NaN	NaN	0.052516	1	24665	14.949	9.0833	1	18540			8931	3041	7551	7746	8931	8931		
IAQDLEMYGINYFEIK	16	Unmodified	_IAQDLEMYGINYFEIK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.982052	1945.94955	1.8022	0.0017553	0.3877	0.00037761	2.1899	0.0021329	974.483769805704	17.654	0.19506	17.654	17.601	17.796	0	207	64	1.18585551256002	0.0418148026585834	1.18585551256002	478.33556535024	0	16.8667321253355						975	23	5	NaN	NaN	NaN	5.4153E-05	1	30644	62.494	59.6	1	210620			8932	710	7552	7747	8932	8932		
IAQDLEMYGINYFEIK	16	Oxidation (M)	_IAQDLEM(Oxidation (M))YGINYFEIK_	IAQDLEM(1)YGINYFEIK	IAQDLEM(49)YGINYFEIK	0	1	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.979509	1961.94447	0.76782	0.00075398	1.7704	0.0017385	2.5382	0.0024925	982.482709610184	16.395	0.18621	16.395	16.271	16.457	0	180	73	1.203763835057	0.0477653906585063	1.203763835057	485.531163535949	0	19.2658933818822						446	22	3	NaN	NaN	NaN	0.0053334	1	30957	49.487	48.216	1	110510			8933	710	7552	7748	8933	8933	237	
IAQDLEMYGVNYFEIK	16	Oxidation (M)	_IAQDLEM(Oxidation (M))YGVNYFEIK_	IAQDLEM(1)YGVNYFEIK	IAQDLEM(48)YGVNYFEIK	0	1	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.971684	1947.92882	2.0906	0.0020383	1.0128	0.00098744	3.1034	0.0030258	974.972270825294	15.508	0.088695	15.508	15.473	15.562	0	192	40	1.1958073123591	0.0258640285956666	1.1958073123591	482.346325195521	0	10.4326332670271						244	11	3	NaN	NaN	NaN	0.01765	1	30678	48.363	41.157	1	54114			8934	962	7553	7749	8934	8934	345	
IAQDLEMYGVNYFSIK	16	Unmodified	_IAQDLEMYGVNYFSIK_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.968945	1889.92334	0.40978	0.00038764	-0.046126	-4.3634E-05	0.36365	0.000344	946.470811530843	16.484	0.0532	16.484	16.466	16.519	0	123	34	1.24149774378079	0.0218189985517374	1.24149774378079	500.884943117285	0	8.80292203768425						119	7	3	NaN	NaN	NaN	0.0057253	1	29367	41.499	39.362	1	19097			8935	846	7554	7750	8935	8935		
IAQDLEMYGVNYFSIK	16	Oxidation (M)	_IAQDLEM(Oxidation (M))YGVNYFSIK_	IAQDLEM(1)YGVNYFSIK	IAQDLEM(61)YGVNYFSIK	0	1	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.966402	1905.91825	1.3718	0.0013087	1.0869	0.0010369	2.4587	0.0023455	954.468218455857	15.296	0.097471	15.296	15.26	15.358	0	216	34	1.17988115188462	0.0219090010853469	1.17988115188462	475.99647786864	0	8.83869306123563						257	12	4	NaN	NaN	NaN	0.00056055	1	29719	61.23	58.514	1	46641			8936	846	7554	7751	8936	8936	285	
IAQFLSDIPETVPLSTVNR	19	Unmodified	_IAQFLSDIPETVPLSTVNR_			0	0	0	P09110	P09110	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.716033	2099.12627	-0.12484	-8.7477E-05	0.34875	0.00024438	0.22391	0.0001569	701.050331941408	17.131	0.097504	17.131	17.087	17.184	0	516	22	0.979317271586824	0.0141355861424926	0.979317271586824	592.228982268597	0	8.54830608815234						186	12	4	NaN	NaN	NaN	0.030444	1	33301	42.495	39.948	1	41577			8937	597	7555	7752	8937	8937		
IAQFLSDIPETVPLSTVNR	19	Unmodified	_IAQFLSDIPETVPLSTVNR_			0	0	0	P09110	P09110	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.57041	2099.12627	1.4084	0.0014797	-0.86737	-0.00091124	0.54107	0.00056843	1051.07119273452	17.131	0.14187	17.131	17.06	17.202	0	117	73	1.24546401832526	0.0476214310416281	1.24546401832526	502.120024769963	0	19.1990083875379						813	17	4	NaN	NaN	NaN	1.8998E-10	1	33302	91.457	83.809	1	217950			8938	597	7555	7752	8938	8938		
IAQGVSGSIQDK	12	Unmodified	_IAQGVSGSIQDK_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.822409	1201.63027	1.8023	0.0010847	-0.9391	-0.00056517	0.86321	0.0005195	601.822180625461	4.1219	0.13292	4.1219	4.0953	4.2283	0	606	28	0.918606045818476	0.0182499701953044	0.918606045818476	372.156498935413	0	7.39364284012368						214	16	3	NaN	NaN	NaN	0.00038152	1	9515	71.066	55.484	1	84093			8939	786	7556	7753	8939	8939		
IAQLEEELEEEQGNTELINDR	21	Unmodified	_IAQLEEELEEEQGNTELINDR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1236.59045	2471.16636	1.3692	0.0016931	-0.72532	-0.00089693	0.64387	0.00079621	1237.09167608107	13.806	0.062055	13.806	13.779	13.841	0	66	67	1.27913350869533	0.0435573750339335	1.27913350869533	515.183594796654	0	17.5431609736938						404	8	4	NaN	NaN	NaN	4.0493E-16	1	36683	138.87	122.77	1	101310			8940	972	7557	7754	8940	8940		
IAQLEEQLDNETK	13	Unmodified	_IAQLEEQLDNETK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.885935	1529.75732	2.6879	0.0020586	-1.2774	-0.00097837	1.4104	0.0010802	765.88500695735	8.4406	0.24828	8.4406	8.3608	8.6091	0	426	127	1.03977710643793	0.0843405996699922	1.03977710643793	420.219297729551	0	34.0857163943809						1477	29	4	NaN	NaN	NaN	8.3214E-17	1	19427	168.05	113.46	1	749330			8941	972	7558	7755	8941	8941		
IAQLICER	8	Unmodified	_IAQLICER_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.773677	1001.5328	0.65405	0.00032818	0.32911	0.00016514	0.98315	0.00049332	501.774356066087	6.4185	0.29262	6.4185	6.3476	6.6402	0	681	46	0.867820189810857	0.0305265242845556	0.867820189810857	352.377842620982	0	12.3952759988831						741	34	4	NaN	NaN	NaN	0.0018943	1	4327	79.809	58.535	1	385650			8942	946	7559	7756	8942	8942		
IAQPGDHVSVTGIFLPILR	19	Unmodified	_IAQPGDHVSVTGIFLPILR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.389592	2032.14695	-0.51871	-0.00035189	-0.98771	-0.00067005	-1.5064	-0.0010219	678.72310103438	17.575	0.11528	17.575	17.53	17.646	0	681	58	0.867820189810857	0.0386454712216178	0.867820189810857	524.9161792087	0	23.3753873619748						580	14	5	NaN	NaN	NaN	1.1355E-10	1	32194	133.47	130.75	1	220140			8943	952	7560	7757	8943	8943		
IAQPGDHVSVTGIFLPILR	19	Unmodified	_IAQPGDHVSVTGIFLPILR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.389592	2032.14695	0.46922	0.00031831	-1.5781	-0.0010706	-1.1089	-0.00075227	678.722938626676	17.583	0.15075	17.583	17.521	17.672	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	566.667588015309	0	13.4769362325502						517	18	5	NaN	NaN	NaN	4.2729E-07	1	32195	99.668	92.02	1	237870			8944	952	7560	7757	8944	8944		
IAQPGDHVSVTGIFLPILR	19	Unmodified	_IAQPGDHVSVTGIFLPILR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.389592	2032.14695	0.37257	0.00025275	-0.7163	-0.00048593	-0.34373	-0.00023318	678.723635048276	17.575	0.097508	17.575	17.539	17.637	0	501	28	0.98941132619024	0.0181642753536437	0.98941132619024	598.462697861214	0	10.9869787671557						219	12	3	NaN	NaN	NaN	0.037998	1	32196	53.051	51.682	1	64390			8945	952	7560	7757	8945	8945		
IAQPGDHVSVTGIFLPILR	19	Unmodified	_IAQPGDHVSVTGIFLPILR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.08075	2032.14695	0.82695	0.00084108	-0.038582	-3.9241E-05	0.78837	0.00080183	1017.08082037806	17.575	0.079793	17.575	17.539	17.619	0	153	49	1.22165005014568	0.0317737401415024	1.22165005014568	492.625880949109	0	12.8126436260442						276	10	3	NaN	NaN	NaN	0.01792	1	32197	26.682	24.972	1	60713			8946	952	7560	7757	8946	8946		
IAQPNYIPTQQDVLR	15	Unmodified	_IAQPNYIPTQQDVLR_			0	0	0	P63096	P63096	P63096	GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.473043	1754.93153	2.5654	0.0022536	-2.177	-0.0019124	0.38841	0.0003412	878.47134562459	11.154	0.11525	11.154	11.083	11.199	0	318	61	1.11199926528787	0.0400129835922274	1.11199926528787	448.88991253042	0	16.1523710181107						389	14	3	NaN	NaN	NaN	0.00022324	1	26035	65.879	53.86	1	102210			8947	1425	7561	7758	8947	8947		
IAQSDYIPTQQDVLR	15	Unmodified	_IAQSDYIPTQQDVLR_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.954683	1745.89481	3.0533	0.0026685	-7.8816	-0.0068881	-4.8283	-0.0042197	874.44913741187	10.844	0.15075	10.844	10.782	10.933	0	327	58	1.10599442759226	0.0380254184095288	1.10599442759226	446.484022830324	0	15.3506576143001						685	18	5	NaN	NaN	NaN	0.00024906	1	25774	75.5	59.213	1	247660			8948	520	7562	7759	8948	8948		
IAQSEAELISDEAQADLALR	20	Unmodified	_IAQSEAELISDEAQADLALR_			0	0	0	Q9UM54	Q9UM54	Q9UM54	MYO6	Unconventional myosin-VI	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.0475	2142.08044	1.5072	0.0016158	0.42976	0.00046072	1.9369	0.0020765	1072.04697598804	15.553	0.15075	15.553	15.508	15.659	0	126	28	1.23951419873743	0.0178543543654297	1.23951419873743	499.65543347531	0	7.1971948195249						162	18	3	NaN	NaN	NaN	2.4466E-05	1	33916	73.345	63.767	1	32181			8949	3286	7563	7760	8949	8949		
IASHYYITNDTVQTYNQLLK	20	Unmodified	_IASHYYITNDTVQTYNQLLK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	795.741018	2384.20123	1.5049	0.0011975	-0.10809	-8.6013E-05	1.3968	0.0011115	796.075232442352	12.733	0.12416	12.733	12.697	12.822	0	492	55	0.995464410099171	0.0363260498310551	0.995464410099171	601.520868330266	0	21.9504352096404						473	15	5	NaN	NaN	NaN	2.4453E-08	1	36269	111.38	105.17	1	149810			8950	350	7564	7761	8950	8950		
IASLEVENQSLR	12	Unmodified	_IASLEVENQSLR_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.867348	1357.72014	1.9356	0.0013159	1.1889	0.00080826	3.1244	0.0021242	679.868345370796	8.4406	0.43473	8.4406	8.3874	8.8221	0	507	115	0.985374541851584	0.07665663012433	0.985374541851584	398.685037367005	0	31.0154668580329						1490	50	5	NaN	NaN	NaN	2.3739E-18	1	14133	228.54	140.36	1	1439300			8951	890	7565	7762	8951	8951		
IASLLGLLSK	10	Unmodified	_IASLLGLLSK_			0	0	0	Q96HW7	Q96HW7	Q96HW7	INTS4	Integrator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.831517	1013.64848	-1.7397	-0.00088348	-1.4659	-0.00074441	-3.2056	-0.0016279	507.830816339494	16.768	0.12413	16.768	16.723	16.847	0	678	25	0.869855008346864	0.0162774195650359	0.869855008346864	353.146874223863	0	6.60836551455554						171	15	3	NaN	NaN	NaN	0.0010127	1	4609	65.404	15.444	1	41441			8952	2552	7566	7763	8952	8952		
IASLPQEVQDVSLLEK	16	Unmodified	_IASLPQEVQDVSLLEK_			0	0	0	Q9NQG5	Q9NQG5	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.988192	1767.96183	2.0648	0.0018273	-0.54855	-0.00048546	1.5163	0.0013419	885.489919217171	15.092	0.1862	15.092	14.985	15.171	0	255	49	1.15396378101328	0.0319092676377801	1.15396378101328	465.80315736806	0	12.8803328661919						601	22	4	NaN	NaN	NaN	0.00023	1	26359	80.815	62.717	1	203770			8953	3000	7567	7764	8953	8953		
IASLPVEVQEVSLLDK	16	Unmodified	_IASLPVEVQEVSLLDK_			0	0	0	Q96P16	Q96P16	Q96P16	RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.49311	1738.97167	1.1359	0.00098877	1.8906	0.0016457	3.0265	0.0026345	870.494463675303	16.333	0.11527	16.333	16.289	16.404	0	285	40	1.13399579921816	0.0259744513925739	1.13399579921816	457.802348629423	0	10.4860748691305						372	14	4	NaN	NaN	NaN	0.0023509	1	25578	55.604	37.873	1	93315			8954	2592	7568	7765	8954	8954		
IASWADLVNAHVVPGSGVVK	20	Unmodified	_IASWADLVNAHVVPGSGVVK_			0	0	0	P11172	P11172	P11172	UMPS	Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.70558	2018.09491	0.6383	0.00043003	-0.53846	-0.00036276	0.099841	6.7264E-05	674.039783099416	15.234	0.06203	15.234	15.207	15.269	0	528	70	0.971237000454584	0.0464905228909541	0.971237000454584	587.497367424575	0	28.1219308941522						356	8	3	NaN	NaN	NaN	0.024412	1	31959	36.902	30.22	1	81102			8955	643	7569	7766	8955	8955		
IATGHGQQGVTQVVLK	16	Unmodified	_IATGHGQQGVTQVVLK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.462478	1634.9104	2.4684	0.0020203	-1.9587	-0.0016031	0.50968	0.00041715	818.460607991027	5.9307	0.070975	5.9307	5.9041	5.9751	0	351	28	1.08996939197032	0.0180393458304879	1.08996939197032	440.25001359994	0	7.28628006044283						130	9	3	NaN	NaN	NaN	0.037439	1	22637	30.875	28.204	1	30294			8956	1193	7570	7767	8956	8956		
IATGSFLK	8	Unmodified	_IATGSFLK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	418.747453	835.480354	-1.3609	-0.00056989	-0.057789	-2.4199E-05	-1.4187	-0.00059409	418.746978205115	7.3585	0.15073	7.3585	7.2964	7.4472	0	804	28	0.78414869089473	0.018420624064141	0.78414869089473	319.259132494753	0	7.49979248453417						193	18	3	NaN	NaN	NaN	0.055714	1	1381	33.396	24.633	1	55868			8957	802	7571	7768	8957	8957		
IATLGYLPTQQDVLR	15	Unmodified	_IATLGYLPTQQDVLR_			0	0	0	P29992	P29992	P29992	GNA11	Guanine nucleotide-binding protein subunit alpha-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.472512	1686.93047	1.917	0.0016189	-2.3478	-0.0019827	-0.43083	-0.00036383	844.470499417124	14.045	0.14187	14.045	13.966	14.107	0	327	55	1.10599442759226	0.0360265591929509	1.10599442759226	446.606926252408	0	14.5477323060671						380	17	4	NaN	NaN	NaN	4.0537E-06	1	24116	99.589	93.212	1	118000			8958	891	7572	7769	8958	8958		
IATLISSFLK	10	Unmodified	_IATLISSFLK_			0	0	0	O95394	O95394	O95394	PGM3	Phosphoacetylglucosamine mutase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.8368	1091.65905	-0.57567	-0.0003148	-1.3857	-0.00075774	-1.9613	-0.0010725	546.83583597118	16.457	0.1862	16.457	16.395	16.581	0	657	58	0.884090832094921	0.0385972383107155	0.884090832094921	358.582629436647	0	15.6548385075475						506	22	4	NaN	NaN	NaN	0.00058548	1	6509	72.042	56.46	1	210720			8959	431	7573	7770	8959	8959		
IATPFQVYSWTAPQAEHAMDCVR	23	Unmodified	_IATPFQVYSWTAPQAEHAMDCVR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	893.421185	2677.24173	2.0324	0.0018158	-0.60969	-0.00054471	1.4227	0.0012711	893.754953761984	16.032	0.13299	16.032	15.961	16.094	0	342	40	1.09598084995137	0.0260532455206195	1.09598084995137	661.839048539535	0	15.7329895202994						472	16	5	NaN	NaN	NaN	0.00064036	1	37537	28.955	28.308	1	109710			8960	307	7574	7771	8960	8960		
IATSLDGFDVASVQQQR	17	Unmodified	_IATSLDGFDVASVQQQR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.968322	1833.92209	1.9894	0.0018262	-0.34837	-0.00031979	1.641	0.0015064	917.967772624053	12.591	0.15072	12.591	12.538	12.689	0	306	199	1.12000185836644	0.131535954179856	1.12000185836644	451.9677091953	0	53.0802725400806						1525	18	3	NaN	NaN	NaN	1.2136E-25	1	28081	200.82	174.35	1	527000			8961	272	7575	7772	8961	8961		
IAVDELFTSLR	11	Unmodified	_IAVDELFTSLR_			0	0	0	Q8WU76	Q8WU76	Q8WU76	SCFD2	Sec1 family domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.350803	1262.68705	-0.099775	-6.3092E-05	-3.9987	-0.0025286	-4.0985	-0.0025917	632.348399965961	16.661	0.10641	16.661	16.608	16.714	0	588	28	0.93076847747433	0.0182373300269247	0.93076847747433	376.876813734704	0	7.38446455581123						185	13	3	NaN	NaN	NaN	0.00054833	1	11306	76.85	36.348	1	41775			8962	2363	7576	7773	8962	8962		
IAVDEVHCCSQWGHDFRPDYK	21	Unmodified	_IAVDEVHCCSQWGHDFRPDYK_			0	0	1	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	655.543045	2618.14308	0.67507	0.00044254	1.4396	0.00094374	2.1147	0.0013863	655.794510672472	8.8842	0.079935	8.8842	8.8487	8.9287	0	615	22	0.912521036363781	0.0142022930717167	0.912521036363781	734.81970204694	0	11.4365854018316						245	10	5	NaN	NaN	NaN	1.1827E-05	1	37305	42.977	41.129	1	66339			8963	1076	7577	7774	8963	8963		
IAVEPVNPSELPK	13	Unmodified	_IAVEPVNPSELPK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.890292	1391.76603	1.7027	0.0011866	0.51321	0.00035765	2.2159	0.0015442	696.890730555671	10.631	0.24831	10.631	10.48	10.729	0	471	70	1.00957851518677	0.0463365125221681	1.00957851518677	408.377308710534	0	18.7432477951793						867	29	4	NaN	NaN	NaN	8.6994E-05	1	15211	112.7	98.248	1	326560			8964	1796	7578	7775	8964	8964		
IAVHPDYQGMGYGSR	15	Unmodified	_IAVHPDYQGMGYGSR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.927951	1649.76202	-1.4103	-0.00077696	1.1667	0.00064279	-0.24352	-0.00013416	550.928845188657	6.9683	0.14204	6.9683	6.9239	7.066	0	786	31	0.796423123669906	0.0204488487727063	0.796423123669906	482.486453194771	0	12.3882547141469						373	17	5	NaN	NaN	NaN	4.6415E-05	1	23018	62.454	52.204	1	146540			8965	2841	7579	7776	8965	8965		
IAVHPDYQGMGYGSR	15	Unmodified	_IAVHPDYQGMGYGSR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.888289	1649.76202	2.6186	0.0021627	-2.2349	-0.0018458	0.38371	0.0003169	825.887539887952	6.9771	0.1064	6.9771	6.9239	7.0303	0	363	34	1.08195024817156	0.0220572074083873	1.08195024817156	436.977941240181	0	8.90846237996004						276	13	4	NaN	NaN	NaN	0.0021161	1	23019	36.46	33.375	1	63445			8966	2841	7579	7776	8966	8966		
IAVMELFR	8	Unmodified	_IAVMELFR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.775688	977.536823	-0.87314	-0.00042764	0.98077	0.00048036	0.10763	5.2713E-05	489.776304502573	15.216	0.10641	15.216	15.171	15.278	-1.7764E-15	714	28	0.845418525735192	0.0183439172239627	0.845418525735192	343.395822238209	0	7.45101313306856						157	13	2	NaN	NaN	NaN	0.010353	1	3794	58.286	38.799	1	53603			8967	1884	7580	7777	8967	8967		
IAVMELFRPK	10	Unmodified	_IAVMELFRPK_			0	0	1	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.902126	1202.68455	-1.5555	-0.00062514	-0.87655	-0.00035229	-2.432	-0.00097743	401.901753907543	12.83	0.15963	12.83	12.768	12.928	0	834	49	0.763668499782291	0.0328048555293224	0.763668499782291	464.070539282282	0	19.9350464251309						481	19	4	NaN	NaN	NaN	0.049971	1	9553	41.025	27.03	1	168120			8968	1884	7581	7778	8968	8968		
IAVYSCPFDGMITETK	16	Unmodified	_IAVYSCPFDGMITETK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.43388	1830.85321	2.2578	0.0020691	1.0643	0.0009754	3.3221	0.0030445	916.936391093914	14.116	0.22168	14.116	14.028	14.249	0	291	106	1.12999890578964	0.06994092441526	1.12999890578964	456.007669533356	0	28.2244502930064						1404	26	5	NaN	NaN	NaN	5.246E-09	1	27997	123.99	113.02	1	828130			8969	1174	7582	7779	8969	8969		
IAVYSCPFDGMITETK	16	Oxidation (M)	_IAVYSCPFDGM(Oxidation (M))ITETK_	IAVYSCPFDGM(1)ITETK	IAVYSCPFDGM(52)ITETK	0	1	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.431338	1846.84812	1.9792	0.0018296	-1.6593	-0.0015339	0.31992	0.00029574	924.931724157186	11.704	0.27496	11.704	11.562	11.837	0	288	82	1.13199748998575	0.0539841010729214	1.13199748998575	456.784454164132	0	21.7837039041898						1557	32	7	NaN	NaN	NaN	0.0068448	1	28401	51.569	49.432	1	439450			8970	1174	7582	7780	8970	8970	425	
ICALDDNVCMAFAGLTADAR	20	Unmodified	_ICALDDNVCMAFAGLTADAR_			0	0	0	O14818	O14818	O14818	PSMA7	Proteasome subunit alpha type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.49775	2182.98094	0.76734	0.00083832	0.57292	0.00062592	1.3403	0.0014642	1093.00033687082	17.504	0.11527	17.504	17.459	17.575	0	135	64	1.23356193185193	0.0416716020579326	1.23356193185193	497.196013501575	0	16.7960390836016						376	14	2	NaN	NaN	NaN	7.9417E-16	1	34489	96.78	94.035	1	239100			8971	121	7583	7781	8971	8971		
ICALDDNVCMAFAGLTADAR	20	Unmodified	_ICALDDNVCMAFAGLTADAR_			0	0	0	O14818	O14818	O14818	PSMA7	Proteasome subunit alpha type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.667591	2182.98094	0.31006	0.00022593	2.288	0.0016672	2.5981	0.0018932	729.003260138838	17.504	0.053225	17.504	17.477	17.53	0	459	22	1.01763759082241	0.0141004608097721	1.01763759082241	615.247430041006	0	8.52491334227864						146	7	4	NaN	NaN	NaN	0.026452	1	34491	41.499	41.41	1	30820			8972	121	7583	7781	8972	8972		
ICANHYITPMMELK	14	Unmodified	_ICANHYITPMMELK_			0	0	0	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.278828	1719.81465	-0.2239	-0.00012858	-0.81446	-0.00046773	-1.0384	-0.00059631	574.278702231854	11.137	0.18621	11.137	11.066	11.252	0	732	85	0.833184998970724	0.057073978284688	0.833184998970724	504.586357073424	0	34.564653494644						1120	22	6	NaN	NaN	NaN	1.2396E-06	1	25049	110.44	75.487	1	425750			8973	1066	7584	7782	8973	8973		
ICANHYITPMMELK	14	Oxidation (M)	_ICANHYITPM(Oxidation (M))MELK_	ICANHYITPM(0.5)M(0.5)ELK	ICANHYITPM(0)M(0)ELK	0	1	0	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.610466	1735.80957	-0.7329	-0.0004248	-0.82029	-0.00047545	-1.5532	-0.00090024	579.610245062822	9.0794	0.11528	9.0794	9.0262	9.1415	0	717	34	0.84338031290707	0.0224234600075238	0.84338031290707	510.723168075918	0	13.5789042724882						293	14	4	NaN	NaN	NaN	0.032708	1	25489	48.822	45.318	2	58068			8974	1066	7584	7783	8974	8974	379;380	
ICAVGITK	8	Unmodified	_ICAVGITK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.246763	860.478974	-0.64843	-0.00027963	-1.6073	-0.00069314	-2.2557	-0.00097277	431.246490742663	5.0617	0.22165	5.0617	5.0174	5.2391	0	801	43	0.78619514174348	0.0286483242431282	0.78619514174348	319.942157978242	0	11.6584371921716						484	26	4	NaN	NaN	NaN	0.0074192	1	1723	75.243	50.393	1	291000			8975	1264	7585	7784	8975	8975		
ICCQFDFK	8	Unmodified	_ICCQFDFK_			0	0	0	Q16706;P49641	Q16706	Q16706	MAN2A1;MAN2A2	Alpha-mannosidase 2;Alpha-mannosidase 2x	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.243895	1116.47324	0.61396	0.00034335	0.47094	0.00026337	1.0849	0.00060672	559.244252387353	8.618	0.1331	8.618	8.5648	8.6979	0	633	37	0.900343422309015	0.0243687449926693	0.900343422309015	365.073407047321	0	9.88109707862975						276	16	3	NaN	NaN	NaN	0.0028771	1	7163	72.492	65.142	1	78912			8976	1901	7586	7785	8976	8976		
ICDDELILIK	10	Unmodified	_ICDDELILIK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.333764	1230.65297	1.0601	0.00065339	-0.97192	-0.00059903	0.088205	5.4364E-05	616.333478949863	13.096	0.22169	13.096	13.043	13.265	0	579	85	0.936845902828289	0.056671649078182	0.936845902828289	379.444405681995	0	22.9533375110792						1086	26	5	NaN	NaN	NaN	2.6129E-10	1	10332	167.04	133.23	1	889620			8977	747	7587	7786	8977	8977		
ICDELIAK	8	Unmodified	_ICDELIAK_			0	0	0	O95359;O75410	O95359	O95359	TACC2;TACC1	Transforming acidic coiled-coil-containing protein 2;Transforming acidic coiled-coil-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.254785	960.495018	0.29059	0.00013985	-1.1895	-0.00057247	-0.89895	-0.00043262	481.254225024276	6.4451	0.14187	6.4451	6.3919	6.5338	0	699	37	0.85560534332665	0.0244398769037869	0.85560534332665	347.619088932747	0	9.92954030638799						274	17	4	NaN	NaN	NaN	0.071503	1	3453	33.396	21.747	1	59289			8978	424	7588	7787	8978	8978		
ICDGVQFGAGIR	12	Unmodified	_ICDGVQFGAGIR_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.824429	1291.63431	1.0174	0.00065811	-1.7094	-0.0011057	-0.692	-0.0004476	646.825416592772	9.4076	0.25719	9.4076	9.2213	9.4785	0	549	82	0.957085760909907	0.0545607436411819	0.957085760909907	387.438947671661	0	22.0867951064551						509	30	2	NaN	NaN	NaN	0.0035833	1	12124	83.358	64.102	1	243030			8979	3421	7589	7788	8979	8979		
ICDPYAWLEDPDSEQTK	17	Unmodified	_ICDPYAWLEDPDSEQTK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.95422	2065.89389	1.6186	0.0016736	1.4131	0.001461	3.0317	0.0031346	1033.95688938903	14.701	0.15962	14.701	14.622	14.781	-1.7764E-15	201	61	1.18983705239708	0.039820885139483	1.18983705239708	479.744216417321	0	16.055845041805						664	19	5	NaN	NaN	NaN	1.5083E-06	1	32798	77.696	75.246	1	172790			8980	1105	7590	7789	8980	8980		
ICDQISDAVLDAHLQQDPDAK	21	Unmodified	_ICDQISDAVLDAHLQQDPDAK_			0	0	0	P31153	P31153	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1176.56045	2351.10634	0.60155	0.00070777	0.16223	0.00019087	0.76378	0.00089864	1177.06283755969	11.749	0.062056	11.749	11.713	11.775	0	66	46	1.27913350869533	0.0296839714567931	1.27913350869533	515.330770094708	0	11.9589267002324						197	8	3	NaN	NaN	NaN	1.704E-05	1	36048	37.769	36.434	1	32987			8981	921	7591	7790	8981	8981		
ICDQISDAVLDAHLQQDPDAK	21	Unmodified	_ICDQISDAVLDAHLQQDPDAK_			0	0	0	P31153	P31153	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	784.709389	2351.10634	1.1344	0.00089021	0.62106	0.00048735	1.7555	0.0013776	785.044370152067	11.749	0.19507	11.749	11.678	11.873	0	537	118	0.965173861991602	0.0787555471064395	0.965173861991602	583.264998891025	0	47.5928285095843						1933	23	6	NaN	NaN	NaN	1.2558E-22	1	36049	222.5	207.49	1	870790			8982	921	7591	7790	8982	8982		
ICDQWDALGSLTHSR	15	Unmodified	_ICDQWDALGSLTHSR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.945782	1757.81552	0.526	0.00030873	1.2551	0.00073666	1.7811	0.0010454	586.946484104207	12.352	0.19507	12.352	12.298	12.493	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	547.622668942643	0	14.7493044321905						677	23	6	NaN	NaN	NaN	3.9936E-09	1	26082	188.88	177.53	1	692440			8983	221	7592	7791	8983	8983		
ICDQWDALGSLTHSR	15	Unmodified	_ICDQWDALGSLTHSR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.915035	1757.81552	2.5147	0.0022127	5.3768	0.0047311	7.8915	0.0069438	880.92385106355	12.396	0.23944	12.396	12.298	12.538	0	288	85	1.13199748998575	0.0559950745012745	1.13199748998575	456.956857312156	0	22.6037014175574						1347	28	6	NaN	NaN	NaN	0.0055613	1	26086	49.487	41.112	1	396130			8984	221	7592	7791	8984	8984		
ICDQWDNLGALTQK	14	Unmodified	_ICDQWDNLGALTQK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.401229	1660.78791	2.1482	0.001786	0.17805	0.00014803	2.3262	0.001934	831.401123367514	13.017	0.15073	13.017	12.955	13.105	0	372	52	1.07593298845566	0.0341025169247675	1.07593298845566	434.523655156576	0	13.7725587589413						435	18	3	NaN	NaN	NaN	7.9529E-17	1	23361	156.02	131.2	1	214470			8985	671	7593	7792	8985	8985		
ICDVYNAVMDVVK	13	Unmodified	_ICDVYNAVMDVVK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.373094	1524.73164	1.5522	0.0011849	-1.4631	-0.0011169	0.089137	6.8045E-05	763.372698221721	16.12	0.15962	16.12	16.067	16.227	0	402	49	1.05585747106793	0.03213855919461	1.05585747106793	426.730688891106	0	12.9889780400115						583	19	5	NaN	NaN	NaN	0.00024527	1	19262	86.243	78.241	1	223380			8986	3430	7594	7793	8986	8986		
ICDYLFNVSDSSALNLAK	18	Unmodified	_ICDYLFNVSDSSALNLAK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.4986	2028.98264	1.1768	0.001195	0.63497	0.00064481	1.8117	0.0018398	1016.00112046596	16.475	0.14188	16.475	16.422	16.564	0	174	67	1.20774045859593	0.0437428836446498	1.20774045859593	487.022040902851	0	17.6393432181283						691	17	4	NaN	NaN	NaN	3.0065E-07	1	32136	95.345	82	1	181950			8987	1273	7595	7794	8987	8987		
ICEDSAEILDSDVLDRPLNIMIPK	24	Unmodified	_ICEDSAEILDSDVLDRPLNIMIPK_			0	0	1	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	919.466349	2755.37722	1.6069	0.0014775	-0.22167	-0.00020382	1.3852	0.0012737	919.80025616874	18.373	0.1064	18.373	18.319	18.426	0	381	133	1.06991323971056	0.0884910384602142	1.06991323971056	646.002723748099	0	53.4299882933132						759	13	6	NaN	NaN	NaN	7.8089E-08	1	37775	65.421	64.324	1	208650			8988	2448	7596	7795	8988	8988		
ICEDSAEILDSDVLDRPLNIMIPK	24	Oxidation (M)	_ICEDSAEILDSDVLDRPLNIM(Oxidation (M))IPK_	ICEDSAEILDSDVLDRPLNIM(1)IPK	ICEDSAEILDSDVLDRPLNIM(59)IPK	0	1	1	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	924.797987	2771.37213	0.94739	0.00087614	-1.722	-0.0015925	-0.77457	-0.00071632	925.130603744525	17.184	0.097538	17.184	17.131	17.229	0	438	97	1.03173026378327	0.0643659328383652	1.03173026378327	622.930182661536	0	38.8623690780923						724	12	5	NaN	NaN	NaN	2.3913E-06	1	37818	58.539	52.491	1	139100			8989	2448	7596	7796	8989	8989	602	
ICEPGYSPTYK	11	Unmodified	_ICEPGYSPTYK_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.805371	1313.59619	1.7029	0.0011202	-0.72965	-0.00047997	0.97321	0.00064018	657.805264234632	5.913	0.22174	5.913	5.8243	6.0461	0	525	67	0.973257487423603	0.0444784249305462	0.973257487423603	393.915731112545	0	18.0021746574293						732	26	4	NaN	NaN	NaN	5.5633E-05	1	12753	104.39	86.999	1	332450			8990	566	7597	7797	8990	8990		
ICEQFEAETPTDSETTQK	18	Unmodified	_ICEQFEAETPTDSETTQK_			0	0	0	P40855	P40855	P40855	PEX19	Peroxisomal biogenesis factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.46515	2112.91574	2.2377	0.0023663	-1.2001	-0.0012691	1.0375	0.0010972	1057.96529259263	7.2166	0.053198	7.2166	7.19	7.2432	0	183	64	1.20177511391933	0.0417345195513319	1.20177511391933	484.485668822698	0	16.8249253821528						137	7	2	NaN	NaN	NaN	6.8291E-05	1	33499	86.135	80.519	1	27249			8991	1021	7598	7798	8991	8991		
ICEVWACNLDEEMK	14	Unmodified	_ICEVWACNLDEEMK_			0	0	0	Q9UIV1	Q9UIV1	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.88624	1795.75793	1.5528	0.0013958	5.4374	0.0048876	6.9901	0.0062833	898.891687453058	13.088	0.13299	13.088	13.017	13.15	0	312	40	1.11600111266355	0.026003062393495	1.11600111266355	450.425056443474	0	10.4949992552778						226	16	2	NaN	NaN	NaN	0.018246	1	27108	42.446	37.059	1	63101			8992	3242	7599	7799	8992	8992		
ICGDIHGQYTDLLR	14	Unmodified	_ICGDIHGQYTDLLR_			0	0	0	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.27524	1659.80389	0.57214	0.00031712	0.81781	0.00045329	1.39	0.00077042	554.275690376595	10.01	0.25713	10.01	9.9484	10.206	0	672	100	0.873923798053065	0.0670652742715823	0.873923798053065	529.411015065401	0	40.6272205961852						1091	30	4	NaN	NaN	NaN	6.3368E-06	1	23329	132.44	113.11	1	343290			8993	1366	7600	7800	8993	8993		
ICGDIHGQYTDLLR	14	Unmodified	_ICGDIHGQYTDLLR_			0	0	0	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.909221	1659.80389	3.0239	0.0025126	-0.7504	-0.00062352	2.2735	0.0018891	830.908443195061	10.019	0.14185	10.019	9.9839	10.126	0	336	37	1.09998710857178	0.0240375557134762	1.09998710857178	444.240275546308	0	9.70779592815347						334	17	4	NaN	NaN	NaN	0.00066493	1	23331	62.454	56.426	1	74050			8994	1366	7600	7800	8994	8994		
ICGDIHGQYYDLLR	14	Unmodified	_ICGDIHGQYYDLLR_			0	0	0	P62136;P36873	P62136;P36873	P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.947123	1721.81954	1.3066	0.00075123	-0.018981	-1.0913E-05	1.2876	0.00074031	574.947552404568	11.048	0.20394	11.048	10.986	11.19	0	606	70	0.918606045818476	0.0466323745818807	0.918606045818476	556.313142579446	0	28.2408361752871						1105	24	5	NaN	NaN	NaN	0.00018764	1	25102	86.838	73.664	1	562500			8995	992;1365	7601	7801	8995	8995		
ICGVEDAVSEMTR	13	Unmodified	_ICGVEDAVSEMTR_			0	0	0	P78330	P78330	P78330	PSPH	Phosphoserine phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.834333	1465.65411	1.4204	0.0010423	-0.71275	-0.00052304	0.70761	0.00051927	733.834342901403	11.403	0.19514	11.403	11.341	11.536	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.174724960651	0	8.14800517717663						428	23	4	NaN	NaN	NaN	2.0796E-07	1	17435	92.707	85.15	1	146330			8996	1456	7602	7802	8996	8996		
ICHQIEYYFGDFNLPR	16	Unmodified	_ICHQIEYYFGDFNLPR_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	691.328004	2070.96218	0.59754	0.0004131	0.30174	0.0002086	0.89928	0.0006217	691.662081319474	15.287	0.12411	15.287	15.242	15.367	0	606	124	0.918606045818476	0.0830698201356349	0.918606045818476	555.564284016133	0	50.2398447703257						1113	15	3	NaN	NaN	NaN	0.00014469	1	32884	84.999	83.289	1	536190			8997	533	7603	7803	8997	8997		
ICHQIEYYFGDFNLPR	16	Unmodified	_ICHQIEYYFGDFNLPR_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1036.48837	2070.96218	1.3188	0.0013669	0.15737	0.00016312	1.4761	0.00153	1036.99004309796	15.296	0.13303	15.296	15.251	15.384	0	162	34	1.21569043230068	0.0218579314296279	1.21569043230068	490.16033598419	0	8.81300924051027						337	16	3	NaN	NaN	NaN	0.06506	1	32885	33.526	32.052	1	101310			8998	533	7603	7803	8998	8998		
ICLDILK	7	Unmodified	_ICLDILK_			0	0	0	P61088	P61088	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.756964	873.499375	-1.8854	-0.00082536	-0.19255	-8.4289E-05	-2.078	-0.00090965	437.757148502165	12.52	0.23936	12.52	12.458	12.697	0	726	37	0.837263974740672	0.024467056718703	0.837263974740672	340.644904651199	0	9.95454056842652						619	28	4	NaN	NaN	NaN	0.0092387	1	1920	76.833	39.225	1	397470			8999	1328	7604	7804	8999	8999		
ICLDVLK	7	Unmodified	_ICLDVLK_			0	0	0	Q9NPD8	Q9NPD8	Q9NPD8	UBE2T	Ubiquitin-conjugating enzyme E2 T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.749139	859.483725	-0.70991	-0.00030579	-1.2394	-0.00053389	-1.9493	-0.00083968	430.748707719967	10.897	0.14189	10.897	10.853	10.995	0	729	37	0.835224628594324	0.0244738587568686	0.835224628594324	339.900884630437	0	9.95981913964897						244	17	3	NaN	NaN	NaN	0.018744	1	1711	46.835	13.023	1	74842			9000	2986	7605	7805	9000	9000		
ICLEDNVLMSGVK	13	Unmodified	_ICLEDNVLMSGVK_			0	0	0	Q92520	Q92520	Q92520	FAM3C	Protein FAM3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.373094	1476.73164	1.2074	0.0008927	-2.0873	-0.0015433	-0.87988	-0.00065056	739.373060072187	13.318	0.31926	13.318	13.256	13.575	0	468	91	1.01159370163332	0.0603930609687628	1.01159370163332	408.960781503577	0	24.4153293672156						870	37	4	NaN	NaN	NaN	9.2133E-05	1	17797	74.524	67.833	1	289890			9001	2405	7606	7806	9001	9001		
ICLEYWNHLAAELYR	15	Unmodified	_ICLEYWNHLAAELYR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.989211	1949.9458	-1.2426	-0.00080893	-0.17886	-0.00011643	-1.4215	-0.00092537	651.323349588441	17.282	0.088688	17.282	17.246	17.335	0	681	37	0.867820189810857	0.0244161317005186	0.867820189810857	525.066147937151	0	14.7727425220559						291	11	4	NaN	NaN	NaN	6.8608E-05	1	30717	65.408	49.879	1	64489			9002	135	7607	7807	9002	9002		
ICLTDHFK	8	Unmodified	_ICLTDHFK_			0	0	0	Q9Y3C8	Q9Y3C8	Q9Y3C8	UFC1	Ubiquitin-fold modifier-conjugating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	345.176027	1032.50625	-1.6127	-0.00055666	-1.2429	-0.00042901	-2.8556	-0.00098567	345.175634623332	6.6402	0.133	6.6402	6.5959	6.7289	0	909	22	0.712342960434231	0.0143952206507976	0.712342960434231	433.687648525175	0	8.76407817694985						144	16	3	NaN	NaN	NaN	0.060675	1	5055	26.223	16.144	1	37480			9003	3385	7608	7808	9003	9003		
ICLWCNEK	8	Unmodified	_ICLWCNEK_			0	0	0	Q969S3	Q969S3	Q969S3	ZNF622	Zinc finger protein 622	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.757169	1121.49979	0.4653	0.00026138	2.0623	0.0011585	2.5276	0.0014199	561.758513413277	8.831	0.142	8.831	8.8133	8.9553	0	642	37	0.894250814548268	0.0243721251806781	0.894250814548268	362.583135208649	0	9.88192732502222						221	17	2	NaN	NaN	NaN	0.020524	1	7295	56.014	42.367	1	42742			9004	2462	7609	7809	9004	9004		
ICNEILTSPCSPEIR	15	Unmodified	_ICNEILTSPCSPEIR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.934579	1787.8546	2.6805	0.0023988	-1.5856	-0.001419	1.0949	0.00097983	895.434404059069	10.48	0.20396	10.48	10.339	10.543	0	309	100	1.11800162319566	0.0661079053980755	1.11800162319566	451.24778445982	0	26.6824709617977						696	24	4	NaN	NaN	NaN	3.7058E-06	1	26918	110.91	95.29	1	143880			9005	2687	7610	7810	9005	9005		
ICNQVLVCER	10	Unmodified	_ICNQVLVCER_			0	0	0	Q9P2R7	Q9P2R7	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.818289	1289.62203	1.8213	0.0011762	-3.4594	-0.0022341	-1.6381	-0.0010579	645.815956500649	6.1702	0.14186	6.1702	6.0993	6.2411	0	552	40	0.955063035883597	0.0262917911447993	0.955063035883597	386.626516587017	0	10.6433850366146						269	17	2	NaN	NaN	NaN	0.058723	1	12048	24.821	18.13	1	83523			9006	3164	7611	7811	9006	9006		
ICPVEFNPNFVAR	13	Unmodified	_ICPVEFNPNFVAR_			0	0	0	Q9UI30	Q9UI30	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.892843	1561.77113	1.7404	0.0013608	-0.2156	-0.00016858	1.5248	0.0011923	781.892924366241	13.292	0.2838	13.292	13.185	13.469	0	423	67	1.04178812298108	0.044233231257419	1.04178812298108	420.9546251517	0	17.8732919606855						1076	33	5	NaN	NaN	NaN	3.9256E-05	1	20395	83.438	57.581	1	470710			9007	3234	7612	7812	9007	9007		
ICPVETLVEEAIQCAEK	17	Unmodified	_ICPVETLVEEAIQCAEK_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.987008	1987.95946	1.4038	0.0013968	0.33423	0.00033255	1.7381	0.0017294	995.488284170875	20.013	0.18623	20.013	19.915	20.102	0	207	82	1.18585551256002	0.0537397634963519	1.18585551256002	478.263980333112	0	21.6736296451836						571	22	6	NaN	NaN	NaN	8.0162E-20	1	31418	165.72	145.83	1	207720			9008	901	7613	7813	9008	9008		
ICQADIVEAVDIASAAK	17	Unmodified	_ICQADIVEAVDIASAAK_			0	0	0	O15213	O15213	O15213	WDR46	WD repeat-containing protein 46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.456201	1772.89785	1.5372	0.0013642	0.27481	0.00024388	1.812	0.0016081	887.456316111839	15.349	0.097534	15.349	15.313	15.411	0	177	37	1.2057522832638	0.0238597451657223	1.2057522832638	486.697293573363	0	9.63089480210124						222	12	3	NaN	NaN	NaN	4.0747E-10	1	26482	124.24	106.14	1	53898			9009	155	7614	7814	9009	9009		
ICSAIINLFHLIPAAPQTLVK	21	Unmodified	_ICSAIINLFHLIPAAPQTLVK_			0	0	0	Q9Y4A5	Q9Y4A5	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.780091	2318.31844	-0.32938	-0.00025487	-0.37172	-0.00028763	-0.7011	-0.0005425	774.447519854923	19.96	0.017751	19.96	19.951	19.969	0	552	16	0.955063035883597	0.0101150255153023	0.955063035883597	577.202851851947	0	6.11312693992613						27	3	3	NaN	NaN	NaN	0.012387	1	35798	32.6	32.266	1	4192.4			9010	3407	7615	7815	9010	9010		
ICSWNVDGLR	10	Unmodified	_ICSWNVDGLR_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.298047	1218.58154	1.0683	0.00065201	1.0712	0.00065374	2.1395	0.0013057	610.298921853946	10.303	0.23052	10.303	10.241	10.472	0	591	40	0.928742107665821	0.0263428128199913	0.928742107665821	376.203501678329	0	10.6706246493384						441	27	2	NaN	NaN	NaN	9.1232E-05	1	9971	112.8	92.568	1	412470			9011	866	7616	7816	9011	9011		
ICSWSLDMLSHPQDSMELVHK	21	Unmodified	_ICSWSLDMLSHPQDSMELVHK_			0	0	0	Q13409	Q13409	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	629.045998	2512.15489	-0.044471	-2.7975E-05	-0.49658	-0.00031237	-0.54105	-0.00034035	629.296563586309	15.003	0.088669	15.003	14.967	15.056	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	726.810207135562	0	13.0814527364055						333	11	6	NaN	NaN	NaN	1.1078E-07	1	36887	87.727	87.663	1	111030			9012	1661	7617	7817	9012	9012		
ICSWSLDMLSHPQDSMELVHK	21	Unmodified	_ICSWSLDMLSHPQDSMELVHK_			0	0	0	Q13409	Q13409	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.392238	2512.15489	1.3884	0.0011641	-0.21644	-0.00018146	1.172	0.0009826	838.726792787591	15.003	0.07096	15.003	14.976	15.047	0	426	34	1.03977710643793	0.0221242386339204	1.03977710643793	628.111935862775	0	13.3648820230793						294	9	5	NaN	NaN	NaN	0.00031347	1	36888	54.556	48.169	1	59918			9013	1661	7617	7817	9013	9013		
ICYIFHETFGR	11	Unmodified	_ICYIFHETFGR_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.567695	1441.68126	0.35277	0.00016988	0.3276	0.00015776	0.68036	0.00032764	481.567847177026	10.817	0.15076	10.817	10.764	10.915	0	684	25	0.86578508874114	0.0162842010813452	0.86578508874114	525.136260960533	0	9.87707524626114						276	18	4	NaN	NaN	NaN	0.001482	1	16715	61.48	44.085	1	79361			9014	79	7618	7818	9014	9014		
ICYQEVSQCFGVLSSR	16	Unmodified	_ICYQEVSQCFGVLSSR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.95076	1931.88697	1.9395	0.0018754	-0.22467	-0.00021725	1.7148	0.0016581	966.950914598191	13.992	0.097539	13.992	13.957	14.054	0	255	40	1.15396378101328	0.0259423204238851	1.15396378101328	465.495471570687	0	10.4648281670942						398	12	5	NaN	NaN	NaN	1.9974E-08	1	30352	105.78	94.808	1	102370			9015	1884	7619	7819	9015	9015		
IDAFHYVQLGTAYR	14	Unmodified	_IDAFHYVQLGTAYR_			0	0	0	Q9H857	Q9H857	Q9H857	NT5DC2	5-nucleotidase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.950973	1652.83109	-0.83404	-0.00046035	-0.11836	-6.5327E-05	-0.95239	-0.00052567	551.951340178656	12.689	0.079835	12.689	12.662	12.742	0	717	31	0.84338031290707	0.0203807147323261	0.84338031290707	510.926017796801	0	12.3467873967166						106	10	2	NaN	NaN	NaN	0.0015003	1	23137	50.116	47.815	1	23394			9016	2923	7620	7820	9016	9016		
IDAMHGVVGPYVK	13	Unmodified	_IDAMHGVVGPYVK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.579712	1384.71731	-0.90499	-0.00041863	-0.21652	-0.00010016	-1.1215	-0.00051879	462.579450893224	8.8133	0.21306	8.8133	8.7422	8.9553	0	753	58	0.81889964927511	0.0388069022420119	0.81889964927511	496.892080858423	0	23.5472593299702						682	25	4	NaN	NaN	NaN	0.035576	1	14980	36.514	30.648	1	248960			9017	991	7621	7821	9017	9017		
IDAMHGVVGPYVK	13	Unmodified	_IDAMHGVVGPYVK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.36593	1384.71731	1.5753	0.0010923	1.0314	0.00071512	2.6067	0.0018074	693.366846358731	8.8133	0.1863	8.8133	8.7068	8.8931	0	435	58	1.03374239103424	0.0382462732394115	1.03374239103424	418.172599574165	0	15.471498163626						334	22	3	NaN	NaN	NaN	8.0947E-05	1	14981	90.142	74.994	1	68849			9018	991	7621	7821	9018	9018		
IDASELSFPFHESILK	16	Unmodified	_IDASELSFPFHESILK_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.652482	1831.93562	-0.021066	-1.2885E-05	-0.86374	-0.00052831	-0.88481	-0.0005412	611.986354681139	16.032	0.10638	16.032	15.987	16.094	0	618	61	0.910492137470517	0.0406033237034125	0.910492137470517	551.13484094562	0	24.5778139428122						541	13	5	NaN	NaN	NaN	0.055921	1	28027	14.949	0.58657	1	183000			9019	1042	7622	7822	9019	9019		
IDASELSFPFHESILK	16	Unmodified	_IDASELSFPFHESILK_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.975084	1831.93562	1.469	0.001347	1.9857	0.0018209	3.4547	0.0031679	917.478125751701	16.032	0.088661	16.032	15.987	16.076	0	201	37	1.18983705239708	0.0238892429642199	1.18983705239708	480.15303775454	0	9.64038945989921						299	11	4	NaN	NaN	NaN	2.5416E-06	1	28029	102.57	91.78	1	92461			9020	1042	7622	7822	9020	9020		
IDASQTEFEK	10	Unmodified	_IDASQTEFEK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.280043	1166.54553	0.57824	0.00033786	0.88064	0.00051454	1.4589	0.00085239	584.280701050836	5.2657	0.14192	5.2657	5.2302	5.3721	0	636	40	0.898312834727904	0.0263976438859336	0.898312834727904	364.059306952602	0	10.6981750307569						269	17	3	NaN	NaN	NaN	0.00058548	1	8500	63.397	44.141	1	71281			9021	400	7623	7823	9021	9021		
IDATQVEVNPFGETPEGQVVCFDAK	25	Unmodified	_IDATQVEVNPFGETPEGQVVCFDAK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	917.437447	2749.29051	1.0534	0.00096642	-0.31065	-0.000285	0.74274	0.00068142	917.771108895694	16.103	0.088684	16.103	16.049	16.138	0	456	34	1.01965166402748	0.0221578688893902	1.01965166402748	615.662140232911	0	13.3788444276736						257	11	5	NaN	NaN	NaN	2.7125E-06	1	37753	64.401	63.886	1	45542			9022	2557	7624	7824	9022	9022		
IDATSASVLASR	12	Unmodified	_IDATSASVLASR_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.822409	1189.63027	1.563	0.0009313	0.89835	0.00053526	2.4614	0.0014666	595.823033486615	7.6156	0.30159	7.6156	7.5536	7.8552	0	591	97	0.928742107665821	0.0647586504405722	0.928742107665821	376.306018809261	0	26.2387908652041						718	35	4	NaN	NaN	NaN	2.5509E-05	1	9153	108.93	89.673	1	368850			9023	680	7625	7825	9023	9023		
IDCDNLEQYFIQQGGGPDK	19	Unmodified	_IDCDNLEQYFIQQGGGPDK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.99695	2195.97935	1.2876	0.001415	0.1313	0.0001443	1.4189	0.0015593	1099.49817044208	14.604	0.097526	14.604	14.56	14.657	0	144	49	1.22760721615852	0.0317737401415024	1.22760721615852	494.777403472825	0	12.8061552904744						383	12	4	NaN	NaN	NaN	2.0652E-05	1	34633	66.66	62.81	1	94898			9024	2404	7626	7826	9024	9024		
IDCDNLEQYFIQQGGGPDK	19	Unmodified	_IDCDNLEQYFIQQGGGPDK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.000392	2195.97935	0.5683	0.00041657	1.1602	0.0008504	1.7285	0.001267	733.334955884403	14.613	0.07982	14.613	14.568	14.648	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	590.836438275083	0	9.76868957417378						197	10	4	NaN	NaN	NaN	0.0025373	1	34634	62.494	61.755	1	44678			9025	2404	7626	7826	9025	9025		
IDCFSEVPTSVFGEK	15	Unmodified	_IDCFSEVPTSVFGEK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.90327	1713.79199	2.5123	0.0021553	-2.2474	-0.001928	0.26495	0.0002273	857.903097512061	14.223	0.12415	14.223	14.178	14.302	0	357	64	1.08596037261705	0.0420802274335219	1.08596037261705	438.461050554183	0	16.9900681399609						557	15	5	NaN	NaN	NaN	8.778E-12	1	24874	154.94	144.16	1	219610			9026	92	7627	7827	9026	9026		
IDDIFER	7	Unmodified	_IDDIFER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.229625	906.444697	-1.5291	-0.00069454	3.625	0.0016466	2.0959	0.00095204	454.229322066471	8.9819	0.18636	8.9819	8.8842	9.0706	0	774	28	0.804600385996946	0.0183924424534009	0.804600385996946	327.171458932916	0	7.47884581656388						220	22	3	NaN	NaN	NaN	0.053579	1	2438	49.058	22.835	1	53508			9027	1511	7628	7828	9027	9027		
IDDIVSGHK	9	Unmodified	_IDDIVSGHK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.261456	982.50836	1.214	0.00059762	0.50761	0.00024988	1.7216	0.00084749	492.261928499759	3.3769	0.29271	3.3769	3.2971	3.5898	0	702	37	0.853568545818287	0.0244466676100031	0.853568545818287	346.68189649954	0	9.92915815800694						351	34	2	NaN	NaN	NaN	0.0004641	1	3893	81.642	55.419	1	239560			9028	1129	7629	7829	9028	9028		
IDDLQMVLNQTEDHR	15	Unmodified	_IDDLQMVLNQTEDHR_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.62823	1825.86286	-0.34796	-0.00021213	0.31302	0.00019082	-0.03494	-2.13E-05	609.962887284233	12.458	0.079814	12.458	12.431	12.511	0	657	19	0.884090832094921	0.0121945167526911	0.884090832094921	535.167081425884	0	7.38171204023524						93	10	2	NaN	NaN	NaN	0.0022791	1	27870	23.931	21.947	1	31558			9029	2454	7630	7830	9029	9029		
IDDMMFVLQGQWMR	14	Unmodified	_IDDMMFVLQGQWMR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.412228	1768.8099	1.1681	0.0010342	-0.11172	-9.8922E-05	1.0564	0.00093531	885.411685460607	19.091	0.062089	19.091	19.073	19.135	0	327	31	1.10599442759226	0.0200230200251346	1.10599442759226	446.438424746766	0	8.0823603588621						151	8	3	NaN	NaN	NaN	0.00019167	1	26371	54.584	47.008	1	25228			9030	927	7631	7831	9030	9030		
IDDPTDSKPEDWDKPEHIPDPDAK	24	Unmodified	_IDDPTDSKPEDWDKPEHIPDPDAK_			0	0	2	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	920.759354	2759.25623	2.01	0.0018507	0.40028	0.00036856	2.4103	0.0022193	921.093923415413	8.3874	0.16853	8.3874	8.3253	8.4938	0	531	79	0.969216233931596	0.0525508774778848	0.969216233931596	585.198763825542	0	31.7294608379168						1010	20	4	NaN	NaN	NaN	0.00030938	1	37784	33.093	32.652	1	261800			9031	868	7632	7832	9031	9031		
IDDPTDSKPEDWDKPEHIPDPDAK	24	Unmodified	_IDDPTDSKPEDWDKPEHIPDPDAK_			0	0	2	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	690.821335	2759.25623	1.7036	0.0011769	1.0587	0.00073139	2.7623	0.0019083	691.073008389116	8.4229	0.32814	8.4229	8.2987	8.6268	0	549	100	0.957085760909907	0.0668054854612237	0.957085760909907	770.498000126718	0	53.7814844266738						2575	38	7	NaN	NaN	NaN	2.2151E-09	1	37785	97.681	91.294	1	1698600			9032	868	7632	7832	9032	9032		
IDDVVNTR	8	Unmodified	_IDDVVNTR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.245806	930.47706	0.39761	0.00018539	-2.4875	-0.0011598	-2.0899	-0.00097442	466.245540110268	4.2105	0.33695	4.2105	4.1484	4.4854	0	753	64	0.81889964927511	0.0428858780119595	0.81889964927511	332.857560356975	0	17.4317924564552						765	39	4	NaN	NaN	NaN	0.0034709	1	2882	69.905	33.335	1	576630			9033	1175	7633	7833	9033	9033		
IDEAESLNDEELEEK	15	Unmodified	_IDEAESLNDEELEEK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.896893	1761.77923	3.3577	0.0029612	-0.066606	-5.874E-05	3.2911	0.0029024	881.896147742002	8.139	0.18628	8.139	8.0858	8.2721	0	342	67	1.09598084995137	0.0440870870026808	1.09598084995137	442.410140660532	0	17.7964554426609						835	22	5	NaN	NaN	NaN	1.6106E-06	1	26184	98.167	89.011	1	260530			9034	251	7634	7834	9034	9034		
IDEHHFVAVALR	12	Unmodified	_IDEHHFVAVALR_			0	0	0	Q9NRN7	Q9NRN7	Q9NRN7	AASDHPPT	L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.589487	1405.74663	0.13053	6.1298E-05	0.82968	0.00038961	0.96022	0.00045091	469.589799074592	8.2721	0.08873	8.2721	8.2366	8.3253	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	520.323219510777	0	13.5908781343039						241	11	3	NaN	NaN	NaN	0.026127	1	15654	43.272	37.009	1	71362			9035	3022	7635	7835	9035	9035		
IDEMPEAAVK	10	Unmodified	_IDEMPEAAVK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.776082	1101.53761	1.0343	0.00057072	4.865	0.0026844	5.8994	0.0032551	551.778963657624	6.3387	0.36359	6.3387	6.2234	6.587	0	618	94	0.910492137470517	0.0629744868978045	0.910492137470517	369.249550808648	0	25.5392661204308						1292	42	4	NaN	NaN	NaN	0.0010282	1	6756	67.507	45.121	1	864850			9036	1201	7636	7836	9036	9036		
IDENYSLPTCK	11	Unmodified	_IDENYSLPTCK_			0	0	0	Q9Y6Y8	Q9Y6Y8	Q9Y6Y8	SEC23IP	SEC23-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.31356	1338.61257	0.82486	0.00055291	-1.2966	-0.00086911	-0.47171	-0.00031619	670.312093439163	7.5624	0.12415	7.5624	7.5003	7.6245	0	543	28	0.961130371139249	0.0181944515400058	0.961130371139249	388.931731694054	0	7.36258030873603						172	15	2	NaN	NaN	NaN	0.045636	1	13547	31.425	22.951	1	41929			9037	3478	7637	7837	9037	9037		
IDEPLEGSEDR	11	Unmodified	_IDEPLEGSEDR_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.291139	1258.56773	2.1403	0.001349	1.4098	0.00088856	3.55	0.0022376	630.292159041158	5.5139	0.53204	5.5139	5.381	5.913	0	591	76	0.928742107665821	0.050638233668732	0.928742107665821	376.069610454782	0	20.5046165698029						1012	61	2	NaN	NaN	NaN	1.6659E-11	1	11158	162.8	127.87	1	2003200			9038	1360	7638	7838	9038	9038		
IDESIHLQLR	10	Unmodified	_IDESIHLQLR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	408.562938	1222.66699	-2.1208	-0.00086649	0.42067	0.00017187	-1.7002	-0.00069462	408.563265273873	9.0085	0.062081	9.0085	8.973	9.0351	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	490.095391698076	0	9.93242692638529						94	8	3	NaN	NaN	NaN	0.018745	1	10098	11.36	10.797	1	22838			9039	3329	7639	7839	9039	9039		
IDESSLTGESDHVK	14	Unmodified	_IDESSLTGESDHVK_			0	0	0	P20020;P23634	P20020;P23634	P20020	ATP2B1;ATP2B4	Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.859917	1515.70528	2.7087	0.0020555	-1.2678	-0.0009621	1.4409	0.0010934	758.858941588452	5.5937	0.14192	5.5937	5.5583	5.7002	0	399	43	1.0578662689527	0.0281251167294885	1.0578662689527	427.565461666486	0	11.3675318627683						337	17	4	NaN	NaN	NaN	8.1732E-08	1	18996	136.06	125.27	1	102510			9040	775;825	7640	7840	9040	9040		
IDFDSVSSIMASSQ	14	Unmodified	_IDFDSVSSIMASSQ_			0	0	0	Q9UBQ5	Q9UBQ5	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.840139	1485.66572	0.22795	0.00016956	1.263	0.0009395	1.491	0.0011091	743.840923609641	17.193	0.16848	17.193	17.14	17.309	0	450	34	1.02367897599655	0.0221456308390058	1.02367897599655	413.823424028831	0	8.95239718306647						350	20	4	NaN	NaN	NaN	7.0506E-06	1	18077	127.93	105.03	1	95835			9041	3184	7641	7841	9041	9041		
IDFVAHDDIPYSSAGSDDVYK	21	Unmodified	_IDFVAHDDIPYSSAGSDDVYK_			0	0	0	P49585;Q9Y5K3	P49585	P49585	PCYT1A;PCYT1B	Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.02185	2313.04372	0.78097	0.00060292	-4.3252	-0.0033391	-3.5442	-0.0027362	772.686490784048	11.793	0.088675	11.793	11.749	11.837	0	543	73	0.961130371139249	0.0484950750884032	0.961130371139249	580.877613384767	0	29.3089307383727						521	11	5	NaN	NaN	NaN	0.00025519	1	35742	83.061	82.25	1	107620			9042	1135	7642	7842	9042	9042		
IDFYFDENPYFENK	14	Unmodified	_IDFYFDENPYFENK_			0	0	0	Q01105;P0DME0	Q01105	Q01105	SET;SETSIP	Protein SET;Protein SETSIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.906867	1839.79918	2.1179	0.0019504	1.3732	0.0012645	3.4911	0.003215	921.409683434716	16.236	0.34579	16.236	16.174	16.519	0	291	79	1.12999890578964	0.0519382153173524	1.12999890578964	455.990996822784	0	20.9587446982579						1885	40	6	NaN	NaN	NaN	3.8149E-33	1	28213	248.5	219.18	1	1991000			9043	1513	7643	7843	9043	9043		
IDGATQSSPAEPK	13	Unmodified	_IDGATQSSPAEPK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.822606	1299.63066	2.5166	0.0016379	-1.869	-0.0012164	0.64758	0.00042146	650.821382198917	3.0755	0.10641	3.0755	3.04	3.1464	0	522	31	0.975277694896658	0.0201978857694813	0.975277694896658	394.777540726815	0	8.17579620007803						139	13	2	NaN	NaN	NaN	0.00021969	1	12337	71.066	59.108	1	27317			9044	1927	7644	7844	9044	9044		
IDGAVIPDHWLDPSAVWEVK	20	Unmodified	_IDGAVIPDHWLDPSAVWEVK_			0	0	0	P18858	P18858	P18858	LIG1	DNA ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	749.719666	2246.13717	-0.47	-0.00035237	-0.51746	-0.00038795	-0.98746	-0.00074032	750.053609156714	18.115	0.088639	18.115	18.071	18.16	0	597	40	0.924688525662974	0.0263537653577723	0.924688525662974	558.952598878684	0	15.9302351312347						272	11	4	NaN	NaN	NaN	0.00050933	1	35154	52.201	48.129	1	52148			9045	759	7645	7845	9045	9045		
IDGLLIDQIQR	11	Unmodified	_IDGLLIDQIQR_			0	0	0	P82650	P82650	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.369527	1282.7245	0.80193	0.00051513	-1.6565	-0.0010641	-0.85452	-0.00054892	642.368198437538	13.247	0.097543	13.247	13.221	13.318	0	537	31	0.965173861991602	0.0202146590130609	0.965173861991602	390.741815780923	0	8.1837199277827						190	12	3	NaN	NaN	NaN	0.0029154	1	11854	56.202	46.688	1	45690			9046	1469	7646	7846	9046	9046		
IDGNLVVRPYTPISSDDDK	19	Unmodified	_IDGNLVVRPYTPISSDDDK_			0	0	1	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.023414	2103.04841	1.3767	0.00096651	-0.0075815	-5.3224E-06	1.3692	0.00096119	702.357740784029	10.374	0.11527	10.374	10.33	10.445	0	576	46	0.938871150116794	0.0303871346419722	0.938871150116794	567.762781606666	0	18.3759870427759						514	14	5	NaN	NaN	NaN	6.2018E-07	1	33362	89.923	79.164	1	158050			9047	474	7647	7847	9047	9047		
IDGPVISESTPIAETIMASSNESLVVNR	28	Unmodified	_IDGPVISESTPIAETIMASSNESLVVNR_			0	0	0	P42167	P42167	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	977.165616	2928.47502	1.3729	0.0013416	0.21124	0.00020642	1.5842	0.001548	977.499723877513	18.479	0.1774	18.479	18.399	18.577	0	192	28	1.1958073123591	0.0179107814054655	1.1958073123591	721.801941459181	0	10.8111370936606						361	21	5	NaN	NaN	NaN	5.3209E-05	1	38118	56.436	55.836	1	68936			9048	1043	7648	7848	9048	9048		
IDGQQTIIACIESHQFQAK	19	Unmodified	_IDGQQTIIACIESHQFQAK_			0	0	0	P47755	P47755	P47755	CAPZA2	F-actin-capping protein subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.700277	2186.079	0.88678	0.00064708	-0.65165	-0.00047551	0.23512	0.00017157	730.365416671376	13.655	0.14189	13.655	13.593	13.735	0	465	40	1.01360860968299	0.0261938098951453	1.01360860968299	612.806097147258	0	15.8362175083354						314	17	4	NaN	NaN	NaN	3.8743E-05	1	34531	62.494	58.121	1	75182			9049	1099	7649	7849	9049	9049		
IDGVSLLVQR	10	Unmodified	_IDGVSLLVQR_			0	0	0	Q6DKI1	Q6DKI1	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.327131	1098.63971	-0.11184	-6.1546E-05	-2.2627	-0.0012452	-2.3745	-0.0013067	550.326865675254	11.811	0.097566	11.811	11.766	11.864	0	615	46	0.912521036363781	0.0304250551653156	0.912521036363781	370.084462830016	0	12.3392664374047						223	12	4	NaN	NaN	NaN	0.0011171	1	6683	74.269	47.812	1	62249			9050	2030	7650	7850	9050	9050		
IDHGHHEGVAYQALTEAVMFDDAIER	26	Unmodified	_IDHGHHEGVAYQALTEAVMFDDAIER_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	731.846253	2923.35591	-0.85257	-0.00062395	-0.77802	-0.00056939	-1.6306	-0.0011933	732.096153224105	15.783	0.079843	15.783	15.748	15.828	0	708	22	0.849494101904619	0.0142615450408974	0.849494101904619	683.689381153898	0	11.4779689246205						178	10	5	NaN	NaN	NaN	0.00032724	1	38104	51.542	45.978	1	34362			9051	613	7651	7851	9051	9051		
IDHGHHEGVAYQALTEAVMFDDAIER	26	Unmodified	_IDHGHHEGVAYQALTEAVMFDDAIER_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	731.846253	2923.35591	-0.048377	-3.5404E-05	-0.78471	-0.00057429	-0.83309	-0.00060969	732.096394873216	15.775	0.088707	15.775	15.748	15.837	0	621	46	0.908462957275599	0.0304503749625084	0.908462957275599	731.148663290453	0	24.5070542196878						391	11	5	NaN	NaN	NaN	3.3862E-06	1	38105	53.44	53.425	1	79904			9052	613	7651	7851	9052	9052		
IDHGHHEGVAYQALTEAVMFDDAIER	26	Unmodified	_IDHGHHEGVAYQALTEAVMFDDAIER_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	975.459245	2923.35591	1.6223	0.0015825	2.5014	0.00244	4.1236	0.0040224	975.795763116574	15.783	0.08869	15.783	15.757	15.845	0	384	40	1.06790610341098	0.0260963753447068	1.06790610341098	644.604748608366	0	15.7521784124408						296	11	4	NaN	NaN	NaN	6.5585E-05	1	38106	42.066	38.016	1	54342			9053	613	7651	7851	9053	9053		
IDHILDAL	8	Unmodified	_IDHILDAL_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.255643	908.496732	-0.24838	-0.00011307	-1.4263	-0.00064932	-1.6747	-0.00076239	455.254932131909	12.955	0.20395	12.955	12.875	13.079	0	741	46	0.827064408645228	0.0306072144336844	0.827064408645228	336.294604041496	0	12.4452714337564						387	24	4	NaN	NaN	NaN	0.051181	1	2481	35.633	23.08	1	258790			9054	518	7652	7852	9054	9054		
IDHLSFGELVPAIINPLDGTEK	22	Unmodified	_IDHLSFGELVPAIINPLDGTEK_			0	0	0	Q96RQ1	Q96RQ1	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	793.424919	2377.25293	-0.63841	-0.00050653	0.3896	0.00030912	-0.24881	-0.00019741	793.759092402771	19.33	0.079785	19.33	19.286	19.366	0	615	16	0.912521036363781	0.0101444947587739	0.912521036363781	551.410709597968	0	6.13003189026585						104	10	3	NaN	NaN	NaN	0.01554	1	36245	33.5	33.195	1	20254			9055	2613	7653	7853	9055	9055		
IDIDPEETVK	10	Unmodified	_IDIDPEETVK_			0	0	0	P54727	P54727	P54727	RAD23B	UV excision repair protein RAD23 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.798069	1157.58158	0.82676	0.00047935	1.9207	0.0011136	2.7474	0.0015929	579.798961368786	8.5116	0.24829	8.5116	8.4229	8.6712	0	612	43	0.914549654013882	0.0283947491785544	0.914549654013882	370.673136063863	0	11.5085831365935						464	29	2	NaN	NaN	NaN	0.0088446	1	8276	61.48	20.455	1	282670			9056	1256	7654	7854	9056	9056		
IDIDYQK	7	Unmodified	_IDIDYQK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.732	893.449448	-0.64348	-0.00028811	4.0053	0.0017933	3.3618	0.0015052	447.73439118419	5.7268	0.30151	5.7268	5.6736	5.9751	0	789	55	0.794378096728713	0.036792574000763	0.794378096728713	323.084913510556	0	14.964065144569						434	35	3	NaN	NaN	NaN	0.032483	1	2228	42.229	12.918	1	134970			9057	1667	7655	7855	9057	9057		
IDILTELR	8	Unmodified	_IDILTELR_			0	0	0	O00139	O00139	O00139	KIF2A	Kinesin-like protein KIF2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.78985	971.565146	-0.42102	-0.00020495	-2.0382	-0.00099216	-2.4592	-0.0011971	486.788856925626	13.762	0.12412	13.762	13.726	13.85	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	347.563195675926	0	6.61862852654639						177	15	3	NaN	NaN	NaN	0.0031132	1	3673	72.492	34.17	1	44962			9058	50	7656	7856	9058	9058		
IDINMSGFNETDDLK	15	Unmodified	_IDINMSGFNETDDLK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.395809	1710.77707	2.7365	0.0023435	2.0618	0.0017658	4.7984	0.0041093	856.397697293901	13.469	0.18621	13.469	13.407	13.593	0	336	64	1.09998710857178	0.0420628401895933	1.09998710857178	444.130667824756	0	16.9832874934926						914	22	5	NaN	NaN	NaN	3.9876E-12	1	24776	197.79	189.79	1	464760			9059	683	7657	7857	9059	9059		
IDISNVK	7	Unmodified	_IDISNVK_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	394.729261	787.443968	-1.6435	-0.00064875	0.45441	0.00017937	-1.1891	-0.00046939	394.729262917719	5.3721	0.15963	5.3721	5.31	5.4697	0	855	37	0.749315378969369	0.0246173593262057	0.749315378969369	305.377320908021	0	10.0326023592452						314	19	3	NaN	NaN	NaN	0.016343	1	890	69.093	22.291	1	108910			9060	1533	7658	7858	9060	9060		
IDISQLVITK	10	Unmodified	_IDISQLVITK_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.344989	1128.67542	0.27926	0.00015788	-2.5278	-0.0014291	-2.2485	-0.0012712	565.343478074193	14.116	0.19508	14.116	14.054	14.249	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	366.67146041961	0	9.87568503467327						385	22	4	NaN	NaN	NaN	3.8587E-05	1	7504	108.93	67.133	1	164600			9061	878	7659	7859	9061	9061		
IDIVENR	7	Unmodified	_IDIVENR_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.737617	857.460681	-0.46414	-0.00019946	0.75377	0.00032392	0.28963	0.00012447	429.73785394175	5.0883	0.3015	5.0883	5.0263	5.3278	0	798	49	0.788241307691771	0.0327272734243672	0.788241307691771	320.792551406415	0	13.3191009401951						589	35	3	NaN	NaN	NaN	0.005157	1	1668	109.11	52.217	1	411500			9062	488	7660	7860	9062	9062		
IDLAVLLGK	9	Unmodified	_IDLAVLLGK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.305136	940.595718	-1.3848	-0.00065264	-0.8177	-0.00038539	-2.2025	-0.001038	471.304858871002	16.44	0.22166	16.44	16.386	16.608	0	735	79	0.831145085810763	0.0530193583837772	0.831145085810763	337.782056981091	0	21.5473666877548						761	26	4	NaN	NaN	NaN	0.00010716	1	3082	87.251	49.643	1	504240			9063	1729	7661	7861	9063	9063		
IDLENTLEQEQEALVNR	17	Unmodified	_IDLENTLEQEQEALVNR_			0	0	0	Q16204	Q16204	Q16204	CCDC6	Coiled-coil domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.007764	2013.00146	-0.10239	-6.8809E-05	-1.7197	-0.0011556	-1.8221	-0.0012245	672.341027584828	15.978	0.097524	15.978	15.934	16.032	0	609	25	0.916577990479294	0.0162255683873757	0.916577990479294	554.443930719572	0	9.8149508370276						239	12	4	NaN	NaN	NaN	7.3364E-07	1	31852	130.71	88.265	1	71659			9064	1879	7662	7862	9064	9064		
IDLENTLEQEQEALVNR	17	Unmodified	_IDLENTLEQEQEALVNR_			0	0	0	Q16204	Q16204	Q16204	CCDC6	Coiled-coil domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.50801	2013.00146	1.3057	0.0013155	-1.85	-0.0018639	-0.54423	-0.00054831	1008.00730618	15.978	0.14186	15.978	15.934	16.076	0	201	52	1.18983705239708	0.0338361298430048	1.18983705239708	479.828375725887	0	13.645175354651						320	17	2	NaN	NaN	NaN	1.2168E-13	1	31853	81.908	67.514	1	190130			9065	1879	7662	7862	9065	9065		
IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR	31	Unmodified	_IDLGVHVDGFIANVAHTFVVDVAQGTQVTGR_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	809.676916	3234.67856	0.57683	0.00046705	-2.3279	-0.0018849	-1.7511	-0.0014178	809.925782921196	20.075	0.017716	20.075	20.075	20.093	0	564	55	0.946969335010767	0.0364267103222841	0.946969335010767	761.792060186053	0	29.3035663101992						140	3	5	NaN	NaN	NaN	0.0054093	1	38492	52.295	52.018	1	36580			9066	3319	7663	7863	9066	9066		
IDLLDRK	7	Unmodified	_IDLLDRK_			0	0	1	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.763635	871.512717	-1.8517	-0.00080875	-0.45228	-0.00019754	-2.304	-0.0010063	436.76342849133	5.8066	0.17733	5.8066	5.7623	5.9396	0	771	28	0.806643990516186	0.0183873254729269	0.806643990516186	328.19858761782	0	7.48123623461453						306	21	3	NaN	NaN	NaN	0.047371	1	1885	81.32	10.651	1	140530			9067	1251	7664	7864	9067	9067		
IDLMPHDLITQLLR	14	Unmodified	_IDLMPHDLITQLLR_			0	0	0	Q9BSJ2	Q9BSJ2	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.983397	1676.92836	-1.9965	-0.001118	1.855	0.0010388	-0.1415	-7.924E-05	559.984584626451	19.419	0.026593	19.419	19.41	19.437	0	744	13	0.82502364452135	0.00816362415981897	0.82502364452135	499.745766043273	0	4.94499356052398						29	4	2	NaN	NaN	NaN	0.00093502	1	23830	54.199	50.911	1	4951.6			9068	2725	7665	7865	9068	9068		
IDLPAENSNSETIIITGK	18	Unmodified	_IDLPAENSNSETIIITGK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.00457	1913.99459	1.9718	0.001889	-1.9654	-0.0018829	0.0063847	6.1165E-06	958.504360820807	12.662	0.14188	12.662	12.635	12.777	0	249	52	1.15795408347545	0.0339059282789234	1.15795408347545	467.136259262045	0	13.6781662840082						409	17	3	NaN	NaN	NaN	0.00094943	1	29934	44.571	38.543	1	80814			9069	1498	7666	7866	9069	9069		
IDLPEYQGEPDEISIQK	17	Unmodified	_IDLPEYQGEPDEISIQK_			0	0	0	Q9BY32	Q9BY32	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.488753	1972.96295	2.7432	0.0027089	-2.7229	-0.0026888	0.020338	2.0084E-05	987.98636183423	12.857	0.15075	12.857	12.786	12.937	0	228	52	1.17191150690002	0.0338733288251551	1.17191150690002	472.665183045814	0	13.6620752294388						467	18	4	NaN	NaN	NaN	0.001434	1	31167	54.556	48.654	1	134620			9070	2793	7667	7867	9070	9070		
IDMNLTDLLGELQR	14	Unmodified	_IDMNLTDLLGELQR_			0	0	0	Q15437;Q15436	Q15437;Q15436	Q15437	SEC23B;SEC23A	Protein transport protein Sec23B;Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.92708	1629.83961	1.3801	0.0011261	-2.0673	-0.0016867	-0.68712	-0.00056064	815.925709640626	19.933	0.16848	19.933	19.853	20.022	0	360	67	1.08395544855938	0.0441296375038467	1.08395544855938	437.832364711078	0	17.8248871462666						468	20	4	NaN	NaN	NaN	6.6204E-24	1	22485	218.12	177.59	1	132790			9071	1851;1850	7668	7868	9071	9071		
IDNDGDGFVTTEELK	15	Unmodified	_IDNDGDGFVTTEELK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.886132	1651.75771	2.6417	0.0021843	0.1549	0.00012809	2.7966	0.0023124	826.886441511045	9.9928	0.39013	9.9928	9.8952	10.285	0	390	73	1.06389100039157	0.0481746253891453	1.06389100039157	429.679842138386	0	19.4565659683795						1256	45	6	NaN	NaN	NaN	1.2369E-43	1	23096	297.54	286.76	1	746100			9072	1831	7669	7869	9072	9072		
IDNSQVESGSLEDDWDFLPPK	21	Unmodified	_IDNSQVESGSLEDDWDFLPPK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1196.05298	2390.0914	0.59421	0.00071071	-2.2789	-0.0027257	-1.6847	-0.002015	1196.55237645527	16.741	0.34583	16.741	16.528	16.874	0	66	94	1.27913350869533	0.0614057649103075	1.27913350869533	515.281371729919	0	24.7364693052104						1178	40	2	NaN	NaN	NaN	1.2646E-07	1	36296	87.251	86.155	1	674610			9073	868	7670	7870	9073	9073		
IDNSQVESGSLEDDWDFLPPK	21	Unmodified	_IDNSQVESGSLEDDWDFLPPK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1196.05298	2390.0914	0.065187	7.7968E-05	-1.2358	-0.0014781	-1.1706	-0.0014001	1196.55325386292	16.945	0.47887	16.945	16.821	17.3	0	69	55	1.27715511956461	0.0356232085192938	1.27715511956461	514.484401725436	0	14.3503203658121						1019	55	4	NaN	NaN	NaN	0.00049037	1	36297	61.503	59.655	1	239110			9074	868	7670	7870	9074	9074		
IDNSQVESGSLEDDWDFLPPK	21	Unmodified	_IDNSQVESGSLEDDWDFLPPK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1196.05298	2390.0914	0.12046	0.00014408	0.55622	0.00066527	0.67669	0.00080935	1196.55371238526	17.176	0.34584	17.176	17.078	17.424	0	66	34	1.27913350869533	0.0217622834966473	1.27913350869533	515.281363274855	0	8.76663697096313						338	40	2	NaN	NaN	NaN	0.015991	1	36298	25.922	25.666	1	102740			9075	868	7670	7870	9075	9075		
IDNSQVESGSLEDDWDFLPPK	21	Unmodified	_IDNSQVESGSLEDDWDFLPPK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1196.05298	2390.0914	0.8862	0.0010599	0.66439	0.00079465	1.5506	0.0018546	1196.5543657897	16.324	0.78029	16.324	16.103	16.883	0	69	106	1.27715511956461	0.0693386086324017	1.27715511956461	514.484396067422	0	27.9321060064794						3422	89	7	NaN	NaN	NaN	7.2745E-11	1	36299	132.63	127.3	1	1214800			9076	868	7670	7870	9076	9076		
IDNYIPIF	8	Unmodified	_IDNYIPIF_			0	0	0	P61421	P61421	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.765843	993.517133	-1.8882	-0.0009399	0.75985	0.00037823	-1.1284	-0.00056168	497.766231627534	18.541	0.079814	18.541	18.488	18.568	0	729	37	0.835224628594324	0.0244840671338465	0.835224628594324	339.179508706234	0	9.94282684834729						87	10	2	NaN	NaN	NaN	0.026462	1	4137	58.286	39.883	1	12950			9077	1344	7671	7871	9077	9077		
IDPAYFDENWLNR	13	Unmodified	_IDPAYFDENWLNR_			0	0	0	Q86VS8	Q86VS8	Q86VS8	HOOK3	Protein Hook homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.888812	1651.76307	1.6943	0.001401	0.054412	4.4993E-05	1.7487	0.001446	826.888323871685	15.464	0.071059	15.464	15.429	15.5	0	396	34	1.05987478976334	0.0220906848842135	1.05987478976334	428.057780611284	0	8.92189307175721						155	9	3	NaN	NaN	NaN	0.00080684	1	23097	54.27	50.024	1	28741			9078	2176	7672	7872	9078	9078		
IDPHAPNEMLYGR	13	Unmodified	_IDPHAPNEMLYGR_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.913642	1511.7191	-1.3122	-0.00066256	-2.3903	-0.0012069	-3.7025	-0.0018694	504.911731545586	7.9172	0.2217	7.9172	7.7753	7.997	0	786	46	0.796423123669906	0.0306583415833394	0.796423123669906	482.852751234738	0	18.5874369312579						450	26	4	NaN	NaN	NaN	0.018436	1	18852	44.598	42.296	1	116450			9079	233	7673	7873	9079	9079		
IDPLALVQAIER	12	Unmodified	_IDPLALVQAIER_			0	0	0	Q14669	Q14669	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.393002	1336.77145	-0.18282	-0.00012238	-0.999	-0.00066872	-1.1818	-0.0007911	669.392083679584	19.339	0.079795	19.339	19.304	19.383	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	395.479548492027	0	6.53872491925483						122	10	3	NaN	NaN	NaN	0.00063205	1	13512	75.474	69.211	1	24550			9080	1761	7674	7874	9080	9080		
IDPLAPLDK	9	Unmodified	_IDPLAPLDK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.2844	980.554247	-1.3283	-0.00065258	-1.5795	-0.00077599	-2.9078	-0.0014286	491.283453492356	12.183	0.20397	12.183	12.05	12.254	0	747	28	0.822982596624503	0.0183719873373771	0.822982596624503	334.268438395558	0	7.46209645583792						292	24	2	NaN	NaN	NaN	0.0659	1	3859	32.14	29.285	1	70448			9081	658	7675	7875	9081	9081		
IDPQTGWPFFVDHNSR	16	Unmodified	_IDPQTGWPFFVDHNSR_			0	0	0	O95817	O95817	O95817	BAG3	BAG family molecular chaperone regulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.307708	1914.9013	-0.42718	-0.0002731	-1.7736	-0.0011338	-2.2007	-0.0014069	639.306458050056	14.285	0.15072	14.285	14.232	14.382	0	729	49	0.835224628594324	0.032640889258064	0.835224628594324	505.409810670395	0	19.7516034552235						607	18	5	NaN	NaN	NaN	7.9952E-06	1	29943	81.908	72.165	1	202630			9082	456	7676	7876	9082	9082		
IDPTVLLGALPLR	13	Unmodified	_IDPTVLLGALPLR_			0	0	0	Q8WUK0	Q8WUK0	Q8WUK0	PTPMT1	Phosphatidylglycerophosphatase and protein-tyrosine phosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.426845	1376.83914	0.097278	6.7066E-05	1.1572	0.00079778	1.2544	0.00086485	689.428037351783	19.658	0.079824	19.658	19.605	19.685	0	504	22	0.987393073566096	0.0141277691793039	0.987393073566096	399.445826539458	0	5.71533119693083						123	10	2	NaN	NaN	NaN	1.8424E-05	1	14719	90.142	89.179	1	31674			9083	2368	7677	7877	9083	9083		
IDPTVTMMQVEEKPDVTYSDVGGCK	25	Oxidation (M)	_IDPTVTMM(Oxidation (M))QVEEKPDVTYSDVGGCK_	IDPTVTM(0.051)M(0.949)QVEEKPDVTYSDVGGCK	IDPTVTM(-13)M(13)QVEEKPDVTYSDVGGCK	0	1	1	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	939.099337	2814.27618	0.69006	0.00064803	1.5306	0.0014374	2.2206	0.0020854	939.435702358948	11.687	0.053207	11.687	11.651	11.704	0	453	25	1.02166545906632	0.0161114741282644	1.02166545906632	616.8063685776	0	9.7269216271327						100	7	3	NaN	NaN	NaN	0.00053992	1	37928	45.587	44.415	2	16825			9084	981	7678	7878	9084	9084	356	
IDPYVFDR	8	Unmodified	_IDPYVFDR_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.758549	1023.50255	0.41804	0.00021436	-1.1056	-0.00056689	-0.68753	-0.00035254	512.758527650628	10.135	0.266	10.135	9.9484	10.214	0	699	58	0.85560534332665	0.0386884208613425	0.85560534332665	347.316944727405	0	15.7048389595662						850	31	5	NaN	NaN	NaN	0.013093	1	4827	53.878	35.475	1	275840			9085	1098	7679	7879	9085	9085		
IDQISIEELDIIYK	14	Unmodified	_IDQISIEELDIIYK_			0	0	0	Q9Y295	Q9Y295	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.458736	1690.90292	1.3375	0.0011322	-3.2328	-0.0027364	-1.8953	-0.0016043	846.455986441865	17.433	0.12413	17.433	17.397	17.521	0	348	25	1.09197348738011	0.0160316600123953	1.09197348738011	440.936752045915	0	6.4735528632018						173	15	3	NaN	NaN	NaN	5.3083E-06	1	24238	106.47	100.77	1	56145			9086	3339	7680	7880	9086	9086		
IDQLEGDHQLIQEALIFDNK	20	Unmodified	_IDQLEGDHQLIQEALIFDNK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.400773	2338.18049	0.29645	0.00023135	-1.2725	-0.00099307	-0.97606	-0.00076172	780.733857827887	15.845	0.15076	15.845	15.801	15.952	0	582	37	0.934820374997243	0.0243080216588687	0.934820374997243	564.940403630456	0	14.6900772968921						378	18	5	NaN	NaN	NaN	3.3222E-11	1	35954	96.78	81.831	1	103580			9087	671	7681	7881	9087	9087		
IDQLEGDHQLIQEALIFDNK	20	Unmodified	_IDQLEGDHQLIQEALIFDNK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1170.09752	2338.18049	1.0064	0.0011776	-0.72177	-0.00084454	0.28461	0.00033302	1170.59880422186	15.845	0.070925	15.845	15.81	15.881	1.7764E-15	111	28	1.24942920585258	0.0178396781216095	1.24942920585258	503.380009386254	0	7.18739188922336						164	9	4	NaN	NaN	NaN	0.062308	1	35955	7.749	5.7781	1	31662			9088	671	7681	7881	9088	9088		
IDQLQEELLHTQLK	14	Unmodified	_IDQLQEELLHTQLK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.98071	1706.9203	-0.77379	-0.00044105	0.16367	9.3291E-05	-0.61012	-0.00034775	569.980636881977	11.926	0.08868	11.926	11.89	11.979	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	529.29016232862	0	12.3195620078774						313	11	4	NaN	NaN	NaN	1.7634E-06	1	24686	156.14	119.63	1	146160			9089	255	7682	7882	9089	9089		
IDQLQEELLHTQLK	14	Unmodified	_IDQLQEELLHTQLK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.467426	1706.9203	0.933	0.00079722	0.84059	0.00071826	1.7736	0.0015155	854.468310774284	11.935	0.09754	11.935	11.89	11.988	0	249	37	1.15795408347545	0.0239385276642174	1.15795408347545	467.543901233031	0	9.66559276712485						274	12	4	NaN	NaN	NaN	4.4265E-06	1	24688	91.939	84.363	1	83427			9090	255	7682	7882	9090	9090		
IDQVNQLLELDHQK	14	Unmodified	_IDQVNQLLELDHQK_			0	0	0	P61201	P61201	P61201	COPS2	COP9 signalosome complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.968693	1691.88425	-0.4273	-0.00024141	-0.13475	-7.613E-05	-0.56205	-0.00031754	564.968601013744	11.509	0.14194	11.509	11.465	11.607	0	720	34	0.841341816837976	0.022426576308619	0.841341816837976	509.593383502993	0	13.5835812184503						481	17	5	NaN	NaN	NaN	5.3638E-06	1	24259	121.71	111.46	1	273270			9091	1333	7683	7883	9091	9091		
IDQVNQLLELDHQK	14	Unmodified	_IDQVNQLLELDHQK_			0	0	0	P61201	P61201	P61201	COPS2	COP9 signalosome complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.949401	1691.88425	1.7985	0.0015233	0.90324	0.000765	2.7018	0.0022883	846.949865328774	11.518	0.10653	11.518	11.474	11.58	0	279	34	1.13799159301878	0.0219753573460744	1.13799159301878	459.516590632612	0	8.87356404700154						267	13	3	NaN	NaN	NaN	1.6232E-05	1	24260	76.563	64.545	1	79436			9092	1333	7683	7883	9092	9092		
IDQYQGADAVGLEEK	15	Unmodified	_IDQYQGADAVGLEEK_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.396667	1634.77878	2.3257	0.0019033	-0.60579	-0.00049577	1.7199	0.0014075	818.396178943259	7.935	0.20403	7.935	7.8818	8.0858	0	381	61	1.06991323971056	0.0401399775748084	1.06991323971056	432.149411809128	0	16.2129666735198						882	24	5	NaN	NaN	NaN	1.5682E-24	1	22611	186.39	152.66	1	354610			9093	198	7684	7884	9093	9093		
IDRLDGAHAPELTK	14	Unmodified	_IDRLDGAHAPELTK_			0	0	1	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.412454	1534.81036	2.823	0.0021692	-1.5285	-0.0011745	1.2945	0.00099468	768.41150235429	5.6471	0.1242	5.6471	5.5849	5.7091	8.8818E-16	384	31	1.06790610341098	0.0200755173877298	1.06790610341098	431.574710642865	0	8.11315300094407						249	15	3	NaN	NaN	NaN	0.0064315	1	19584	42.495	35.639	1	53991			9094	377	7685	7885	9094	9094		
IDRLDGAHAPELTK	14	Unmodified	_IDRLDGAHAPELTK_			0	0	1	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.610728	1534.81036	1.3275	0.00068047	0.82181	0.00042127	2.1493	0.0011017	512.6111990367	5.6381	0.18625	5.6381	5.5583	5.7445	8.8818E-16	669	37	0.875957769340875	0.0244059657771015	0.875957769340875	531.000331332628	0	14.7947496645704						501	22	4	NaN	NaN	NaN	9.821E-06	1	19585	121.71	97.022	1	198730			9095	377	7685	7885	9095	9095		
IDRPEAISEER	11	Unmodified	_IDRPEAISEER_			0	0	1	Q9Y6B6	Q9Y6B6	Q9Y6B6	SAR1B	GTP-binding protein SAR1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.893124	1313.65754	-1.4777	-0.00064856	0.70301	0.00030855	-0.7747	-0.00034001	438.893518964445	4.0953	0.097559	4.0953	4.042	4.1396	0	843	22	0.757518876820989	0.014351120667235	0.757518876820989	459.892798555177	0	8.71262386721673						106	12	2	NaN	NaN	NaN	0.050871	1	12761	30.349	25.198	1	22719			9096	3457	7686	7886	9096	9096		
IDSDDALNHDFFWSDPMPSDLK	22	Unmodified	_IDSDDALNHDFFWSDPMPSDLK_			0	0	0	P50750	P50750	P50750	CDK9	Cyclin-dependent kinase 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	855.7128	2564.11657	-0.0082944	-7.0976E-06	-1.4127	-0.0012089	-1.421	-0.001216	856.046284692613	16.759	0.13301	16.759	16.679	16.812	0	522	40	0.975277694896658	0.0262627024268471	0.975277694896658	589.083244302095	0	15.8630901031596						425	16	5	NaN	NaN	NaN	1.2102E-06	1	37081	85.421	82.516	1	76515			9097	1171	7687	7887	9097	9097		
IDSDISGTLK	10	Unmodified	_IDSDISGTLK_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.779679	1047.5448	0.65881	0.00034573	1.281	0.00067225	1.9398	0.001018	524.780904180532	6.6402	0.28374	6.6402	6.5781	6.8619	0	696	82	0.857641857947968	0.0549325218208341	0.857641857947968	348.037575843068	0	22.2920343174638						677	33	4	NaN	NaN	NaN	2.76E-07	1	5410	126.82	72.947	1	399950			9098	3341	7688	7888	9098	9098		
IDSDLGDAWAFFYK	14	Unmodified	_IDSDLGDAWAFFYK_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.388113	1646.76167	1.155	0.0009522	0.70435	0.00058066	1.8594	0.0015329	824.388834515276	18.905	0.088666	18.905	18.878	18.967	0	363	34	1.08195024817156	0.0220602476695482	1.08195024817156	436.984561043201	0	8.90982525367775						225	11	4	NaN	NaN	NaN	4.9999E-08	1	22938	115.04	111.53	1	54978			9099	396	7689	7889	9099	9099		
IDSIPHLNNSTPLVDPSVYGYGVQK	25	Unmodified	_IDSIPHLNNSTPLVDPSVYGYGVQK_			0	0	0	Q96I24	Q96I24	Q96I24	FUBP3	Far upstream element-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	905.132575	2712.3759	1.4397	0.0013031	-0.4642	-0.00042016	0.97552	0.00088298	905.466457433739	14.258	0.097525	14.258	14.205	14.302	0	477	85	1.0055473068722	0.0564291713841963	1.0055473068722	607.187558648711	0	34.0740714784636						787	12	4	NaN	NaN	NaN	2.6756E-13	1	37641	147.64	146.46	1	180170			9100	2554	7690	7890	9100	9100		
IDSLSAQLSQLQK	13	Unmodified	_IDSLSAQLSQLQK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.896106	1429.77766	1.4988	0.001073	0.92639	0.0006632	2.4252	0.0017362	715.89695200761	11.793	0.23059	11.793	11.731	11.961	0	462	79	1.01562323939346	0.0523334117742673	1.01562323939346	410.714954907368	0	21.1634728542185						1018	27	5	NaN	NaN	NaN	2.128E-11	1	16395	192.14	158.42	1	805700			9101	493	7691	7891	9101	9101		
IDSVYLDPLVFR	12	Unmodified	_IDSVYLDPLVFR_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.892835	1435.77112	0.75939	0.00054592	0.18915	0.00013598	0.94854	0.0006819	718.892914918232	17.202	0.15075	17.202	17.149	17.3	0	444	40	1.02770517576159	0.0261684967549374	1.02770517576159	415.584233247152	0	10.5820374516184						415	18	4	NaN	NaN	NaN	0.00011035	1	16567	99.34	83.461	1	147790			9102	259	7692	7892	9102	9102		
IDSWENAEDFLEK	13	Unmodified	_IDSWENAEDFLEK_			0	0	0	Q13823	Q13823	Q13823	GNL2	Nucleolar GTP-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.364835	1594.71512	1.5876	0.0012675	2.6739	0.0021347	4.2615	0.0034022	798.367833442627	14.542	0.133	14.542	14.489	14.622	0	402	31	1.05585747106793	0.020089366798685	1.05585747106793	426.562143764169	0	8.11602285661189						359	16	5	NaN	NaN	NaN	6.8164E-07	1	21415	115.04	88.458	1	92766			9103	1704	7693	7893	9103	9103		
IDSYQEPFTHSAPESIPDTFEDAVNILK	28	Unmodified	_IDSYQEPFTHSAPESIPDTFEDAVNILK_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1055.17506	3162.50334	1.6366	0.0017269	0.069747	7.3595E-05	1.7064	0.0018005	1055.50970568487	18.94	0.10644	18.94	18.878	18.984	0	297	31	1.12600091227925	0.0199954725049127	1.12600091227925	679.428206655572	0	12.0652549008544						210	13	4	NaN	NaN	NaN	0.012174	1	38425	14.646	14.483	1	30703			9104	817	7694	7894	9104	9104		
IDTHNIIVNQLVFPDPEK	18	Unmodified	_IDTHNIIVNQLVFPDPEK_			0	0	0	O43681	O43681	O43681	ASNA1	ATPase ASNA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.040628	2091.10005	0.34861	0.00024335	-1.434	-0.001001	-1.0854	-0.00075767	698.373806179624	15.118	0.15962	15.118	15.056	15.216	0	612	118	0.914549654013882	0.0791820781558682	0.914549654013882	553.07557890512	0	47.8855068423683						1174	19	3	NaN	NaN	NaN	0.0019391	1	33206	63.947	57.091	1	301700			9105	219	7695	7895	9105	9105		
IDTHNIIVNQLVFPDPEK	18	Unmodified	_IDTHNIIVNQLVFPDPEK_			0	0	0	O43681	O43681	O43681	ASNA1	ATPase ASNA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.5573	2091.10005	1.6715	0.0017494	-1.645	-0.0017216	0.026497	2.7731E-05	1046.55479733615	15.136	0.28377	15.136	14.923	15.207	-1.7764E-15	138	94	1.23157729878518	0.0615912353781098	1.23157729878518	496.533996442626	0	24.8316872016863						849	33	4	NaN	NaN	NaN	0.020034	1	33207	17.807	15.092	1	176640			9106	219	7695	7895	9106	9106		
IDTIEIITDR	10	Unmodified	_IDTIEIITDR_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.82716	1187.63977	0.95665	0.00056904	1.1047	0.0006571	2.0613	0.0012261	594.827801822473	12.112	0.48771	12.112	11.944	12.431	0	588	70	0.93076847747433	0.0465936234393901	0.93076847747433	377.134305096792	0	18.8790813430192						1637	56	6	NaN	NaN	NaN	2.6756E-10	1	9099	166.61	110.24	1	2532700			9107	808	7696	7896	9107	9107		
IDVDAPDIDIHGPDAK	16	Unmodified	_IDVDAPDIDIHGPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.280936	1689.82098	0.99386	0.00056082	0.63719	0.00035955	1.631	0.00092037	564.282005375121	10.498	0.2483	10.498	10.418	10.667	0	627	40	0.90440375274676	0.026386663985959	0.90440375274676	547.79487113009	0	15.982329964733						541	29	5	NaN	NaN	NaN	0.029873	1	24205	34.472	29.378	1	237150			9108	1584	7697	7897	9108	9108		
IDVEDILCK	9	Unmodified	_IDVEDILCK_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.783907	1103.55326	0.58247	0.00032198	0.60969	0.00033702	1.1922	0.00065901	552.784553233205	13.54	0.15962	13.54	13.469	13.629	0	642	40	0.894250814548268	0.0264122944165538	0.894250814548268	362.654726425064	0	10.7112492938931						247	19	4	NaN	NaN	NaN	0.0044329	1	6811	84.368	63.093	1	73554			9109	2339	7698	7898	9109	9109		
IDVGEAEPR	9	Unmodified	_IDVGEAEPR_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.251089	984.487624	0.93323	0.00046032	1.0795	0.00053247	2.0128	0.00099279	493.251080421479	4.9731	0.32806	4.9731	4.8223	5.1504	0	690	109	0.86171403876517	0.07340127222881	0.86171403876517	349.980519831919	0	29.8115317324705						590	38	2	NaN	NaN	NaN	0.057235	1	3924	33.426	23.347	1	160680			9110	1251	7699	7899	9110	9110		
IDVGFVYDEPGHAVMR	16	Unmodified	_IDVGFVYDEPGHAVMR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.294411	1803.8614	-0.85663	-0.00051594	0.2312	0.00013925	-0.62543	-0.00037669	602.628700518962	11.97	0.133	11.97	11.935	12.068	0	642	31	0.894250814548268	0.0203157386472897	0.894250814548268	541.366944824357	0	12.2988642385405						339	16	5	NaN	NaN	NaN	0.00020491	1	27318	93.162	80.48	1	96255			9111	3136	7700	7900	9111	9111		
IDVGFVYDEPGHAVMR	16	Unmodified	_IDVGFVYDEPGHAVMR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.937979	1803.8614	0.71344	0.00064419	0.76873	0.00069412	1.4822	0.0013383	903.439800716899	11.97	0.1064	11.97	11.935	12.041	0	195	43	1.19381749893585	0.0278669582266173	1.19381749893585	481.815668630928	0	11.2468925297512						286	13	3	NaN	NaN	NaN	2.6042E-06	1	27319	101.64	92.487	1	56549			9112	3136	7700	7900	9112	9112		
IDVLLQQIEELGSEGK	16	Unmodified	_IDVLLQQIEELGSEGK_			0	0	0	O95232	O95232	O95232	LUC7L3	Luc7-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.977824	1769.94109	1.4937	0.0013234	0.21243	0.00018821	1.7062	0.0015116	886.478243687151	18.231	0.19507	18.231	18.124	18.319	0	267	97	1.14597988355104	0.0639151911157265	1.14597988355104	462.57638992574	0	25.7994566851484						988	23	4	NaN	NaN	NaN	1.9857E-12	1	26421	144.2	131.02	1	317890			9113	413	7701	7901	9113	9113		
IDVPANRYDLLCLEGLVR	18	Unmodified	_IDVPANRYDLLCLEGLVR_			0	0	1	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.045496	2115.11466	-0.51954	-0.00036682	-1.4961	-0.0010563	-2.0156	-0.0014231	706.378887378639	16.839	0.10641	16.839	16.794	16.901	0	612	37	0.914549654013882	0.0243484786239944	0.914549654013882	553.034190065607	0	14.7236851449798						337	13	5	NaN	NaN	NaN	0.00061392	1	33548	34.338	32.75	1	92694			9114	3036	7702	7902	9114	9114		
IDVSIEAASGGK	12	Unmodified	_IDVSIEAASGGK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.803685	1145.59282	1.7748	0.0010184	-1.8098	-0.0010385	-0.034991	-2.0078E-05	573.803700736407	7.6777	0.13308	7.6777	7.6245	7.7576	0	645	49	0.892219381832517	0.0324961712839548	0.892219381832517	361.667094798453	0	13.1725404083937						456	16	3	NaN	NaN	NaN	0.0002908	1	7947	74.849	62.891	1	186580			9115	607	7703	7903	9115	9115		
IDVTAPDVSIEEPEGK	16	Unmodified	_IDVTAPDVSIEEPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.925257	1697.83596	2.1634	0.0018387	0.037218	3.1632E-05	2.2006	0.0018703	849.924155574306	11.216	0.15961	11.216	11.119	11.279	0	363	94	1.08195024817156	0.0621013562493276	1.08195024817156	436.874872875823	0	25.0755727101967						851	19	4	NaN	NaN	NaN	4.1968E-12	1	24434	154.09	140.91	1	288250			9116	1584	7704	7904	9116	9116		
IDVYGFSALWK	11	Unmodified	_IDVYGFSALWK_			0	0	0	Q9UBV8	Q9UBV8	Q9UBV8	PEF1	Peflin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.842613	1297.67067	0.69949	0.00045456	-0.32191	-0.00020919	0.37758	0.00024537	649.842330515275	17.69	0.10641	17.69	17.663	17.77	0	537	34	0.965173861991602	0.0222345870481429	0.965173861991602	390.69386321109	0	9.00036465224724						231	13	3	NaN	NaN	NaN	0.0033256	1	12293	43.168	33.08	1	60916			9117	3192	7705	7905	9117	9117		
IDWPVGSPATIHYPALDGHLSR	22	Unmodified	_IDWPVGSPATIHYPALDGHLSR_			0	0	0	O15498	O15498	O15498	YKT6	Synaptobrevin homolog YKT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	601.311746	2401.21788	0.14823	8.9134E-05	0.047584	2.8613E-05	0.19582	0.00011775	601.562307793322	14.169	0.25714	14.169	14.019	14.276	0	612	31	0.914549654013882	0.0202875850561227	0.914549654013882	736.804233922439	0	16.3446331205828						544	30	4	NaN	NaN	NaN	0.010536	1	36356	30.392	30.178	1	123100			9118	178	7706	7906	9118	9118		
IDYGEYMDK	9	Unmodified	_IDYGEYMDK_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.244615	1132.47468	1.347	0.00076409	0.36148	0.00020505	1.7085	0.00096913	567.244854658982	7.997	0.16858	7.997	7.9438	8.1124	0	630	40	0.902373728295776	0.0263903231913262	0.902373728295776	365.833606423936	0	10.6989674067856						547	20	5	NaN	NaN	NaN	0.0052236	1	7588	83.623	58.772	1	385700			9119	1546	7707	7907	9119	9119		
IEAACFATIK	10	Unmodified	_IEAACFATIK_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.294442	1122.57433	0.69939	0.00039326	-1.0441	-0.00058707	-0.34468	-0.00019381	562.294110928167	9.0972	0.20396	9.0972	9.0528	9.2568	0	636	40	0.898312834727904	0.026401305375596	0.898312834727904	364.225903358222	0	10.7045551711118						420	24	3	NaN	NaN	NaN	0.00072042	1	7338	63.397	34.296	1	123480			9120	1158	7708	7908	9120	9120		
IEAINQAIANEYEVR	15	Unmodified	_IEAINQAIANEYEVR_			0	0	0	Q8NCA5	Q8NCA5	Q8NCA5	FAM98A	Protein FAM98A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.946858	1731.87916	2.0133	0.0017454	-1.8101	-0.0015692	0.20321	0.00017617	867.44574746761	11.802	0.27488	11.802	11.642	11.917	0	294	97	1.12800004657306	0.0639767767873356	1.12800004657306	455.396581768345	0	25.8287271795976						801	32	5	NaN	NaN	NaN	6.6765E-07	1	25381	115.35	105.6	1	256060			9121	2298	7709	7909	9121	9121		
IEALQNHENESVYK	14	Unmodified	_IEALQNHENESVYK_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.410108	1672.80566	3.7446	0.0031358	-2.8489	-0.0023857	0.89569	0.00075006	837.407677359977	5.0883	0.15959	5.0883	5.0529	5.2125	0	366	49	1.07994477139643	0.0320986976167694	1.07994477139643	436.117928713511	0	12.9625309458423						467	19	4	NaN	NaN	NaN	2.5832E-11	1	23689	149.02	135.22	1	192590			9122	1207	7710	7910	9122	9122		
IEALQNHENESVYK	14	Unmodified	_IEALQNHENESVYK_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.609164	1672.80566	0.89334	0.00049903	0.75225	0.00042021	1.6456	0.00091924	558.609741365444	5.0883	0.16847	5.0883	5.0529	5.2213	0	732	46	0.833184998970724	0.0306029596118851	0.833184998970724	504.699571226738	0	18.5376604397198						536	20	5	NaN	NaN	NaN	7.8238E-06	1	23690	93.162	61.738	1	273060			9123	1207	7710	7910	9123	9123		
IEANEALVK	9	Unmodified	_IEANEALVK_			0	0	0	P30049	P30049	P30049	ATP5D	ATP synthase subunit delta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.779482	985.544411	0.1808	8.9273E-05	1.2436	0.00061406	1.4244	0.00070333	493.780344346752	5.443	0.23939	5.443	5.381	5.6203	0	714	46	0.845418525735192	0.030568952954407	0.845418525735192	343.357111223119	0	12.415232290318						541	28	4	NaN	NaN	NaN	0.010978	1	3969	65.404	37.699	1	516650			9124	899	7711	7911	9124	9124		
IECSDNGDGTCSVSYLPTK	19	Unmodified	_IECSDNGDGTCSVSYLPTK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.95389	2101.89323	3.232	0.0033999	-1.4309	-0.0015053	1.801	0.0018946	1052.45441207858	8.2277	0.097594	8.2277	8.1922	8.2898	0	225	43	1.17390432875292	0.0278937633686938	1.17390432875292	473.265999177249	0	11.2455244163914						372	12	5	NaN	NaN	NaN	0.030037	1	33336	39.587	37.198	1	84694			9125	326	7712	7912	9125	9125		
IEDFLER	7	Unmodified	_IEDFLER_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.23745	920.460347	-0.69618	-0.0003211	-0.21878	-0.00010091	-0.91495	-0.00042201	461.237260240296	8.973	0.23956	8.973	8.8487	9.0883	0	750	58	0.820941264895493	0.0387961087327446	0.820941264895493	333.740237236147	0	15.7719231399019						679	28	3	NaN	NaN	NaN	0.0012647	1	2708	108.92	70.602	1	761330			9126	1089	7713	7913	9126	9126		
IEDGNNFGVAVQEK	14	Unmodified	_IEDGNNFGVAVQEK_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.372995	1518.73144	3.1533	0.0023977	-3.4782	-0.0026447	-0.32484	-0.000247	760.870854330942	7.7132	0.23952	7.7132	7.6511	7.8906	0	441	67	1.02971785871157	0.0442698808649449	1.02971785871157	416.181018767783	0	17.8925556774887						857	28	5	NaN	NaN	NaN	4.7216E-13	1	19087	184.43	157.49	1	264980			9127	1560	7714	7914	9127	9127		
IEDILEVIEK	10	Unmodified	_IEDILEVIEK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.839736	1199.66492	-0.11466	-6.8894E-05	-1.729	-0.0010389	-1.8437	-0.0011077	600.838897449514	15.925	0.2749	15.925	15.801	16.076	0	606	58	0.918606045818476	0.0385170505525262	0.918606045818476	372.163424066007	0	15.6047714728238						704	32	4	NaN	NaN	NaN	5.6005E-07	1	9456	107.08	81.824	1	347740			9128	1903	7715	7915	9128	9128		
IEDLEEGQQVIR	12	Unmodified	_IEDLEEGQQVIR_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.870088	1427.72562	1.8763	0.0013413	-0.40658	-0.00029066	1.4698	0.0010507	714.870468642947	8.3697	0.10645	8.3697	8.3342	8.4406	0	474	40	1.00756305028564	0.0262046696285547	1.00756305028564	407.461055183929	0	10.597234917031						276	13	3	NaN	NaN	NaN	2.5716E-07	1	16319	129.28	109.96	1	82151			9129	1713	7716	7916	9129	9129		
IEDLLQSEENK	11	Unmodified	_IEDLLQSEENK_			0	0	0	O95453	O95453	O95453	PARN	Poly(A)-specific ribonuclease PARN	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.330264	1316.64598	1.5883	0.0010472	1.4596	0.00096233	3.0479	0.0020096	659.332248778165	8.0502	0.19522	8.0502	7.9881	8.1833	0	528	43	0.971237000454584	0.028284867590345	0.971237000454584	393.088473658926	0	11.4477263773205						504	23	5	NaN	NaN	NaN	5.5781E-05	1	12876	79.311	40.301	1	146590			9130	435	7717	7917	9130	9130		
IEDLSQQAQLAAAEK	15	Unmodified	_IEDLSQQAQLAAAEK_			0	0	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.949298	1613.82606	-0.40212	-0.00021672	-0.36684	-0.00019771	-0.76896	-0.00041443	538.949166868238	8.5825	0.070929	8.5825	8.5559	8.6268	0	732	22	0.833184998970724	0.0142793929475133	0.833184998970724	504.850899737567	0	8.65229737232909						137	9	3	NaN	NaN	NaN	0.0025749	1	22009	66.953	61.255	1	34982			9131	46	7718	7918	9131	9131		
IEDLSQQAQLAAAEK	15	Unmodified	_IEDLSQQAQLAAAEK_			0	0	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.920309	1613.82606	2.9093	0.0023504	-0.61327	-0.00049547	2.296	0.001855	807.920102512	8.5914	0.44371	8.5914	8.4938	8.9375	0	378	193	1.07192009927972	0.128643534299057	1.07192009927972	433.007236098721	0	51.9661691820463						2303	51	5	NaN	NaN	NaN	3.8578E-70	1	22010	335	270.93	1	1817400			9132	46	7718	7918	9132	9132		
IEDNNTLVFIVDVK	14	Unmodified	_IEDNNTLVFIVDVK_			0	0	0	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.93797	1617.86139	2.0422	0.001654	-1.9004	-0.0015392	0.14176	0.00011482	810.438208770924	15.996	0.24829	15.996	15.952	16.2	0	354	40	1.08796502040166	0.0260640179471912	1.08796502040166	439.479334601049	0	10.5284609795933						541	29	4	NaN	NaN	NaN	1.1158E-08	1	22133	144.2	129.74	1	132400			9133	1395	7719	7919	9133	9133		
IEDRLPELEQLER	13	Unmodified	_IEDRLPELEQLER_			0	0	1	Q9NYH9	Q9NYH9	Q9NYH9	UTP6	U3 small nucleolar RNA-associated protein 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.293176	1638.8577	-1.8696	-0.0010232	-0.4612	-0.00025241	-2.3308	-0.0012756	547.292838964829	11.571	0.21291	11.571	11.465	11.678	0	774	28	0.804600385996946	0.0183924424534009	0.804600385996946	487.467358768471	0	11.1430661730934						397	25	3	NaN	NaN	NaN	3.8062E-05	1	22738	84.999	68.24	1	107870			9134	3114	7720	7920	9134	9134		
IEDTVFHVFDK	11	Unmodified	_IEDTVFHVFDK_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.562715	1348.66632	-2.1958	-0.00098936	-0.55889	-0.00025181	-2.7547	-0.0012412	450.562511542996	12.13	0.11529	12.13	12.086	12.201	0	789	25	0.794378096728713	0.016361355368585	0.794378096728713	482.140062080726	0	9.9303655596994						197	14	3	NaN	NaN	NaN	0.047549	1	13852	18.507	14.525	1	63938			9135	3343	7721	7921	9135	9135		
IEDVGSDEEDDSGK	14	Unmodified	_IEDVGSDEEDDSGK_			0	0	0	P08238;Q58FF8	P08238;Q58FF8	P08238	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.807547	1493.60054	2.2028	0.0016473	-1.0029	-0.00074995	1.2	0.00089734	747.80647963456	3.4213	0.28386	3.4213	3.3769	3.6608	0	519	58	0.97729762293174	0.0383945804732124	0.97729762293174	395.054345999766	0	15.5202934324948						816	33	4	NaN	NaN	NaN	3.0828E-12	1	18342	154.94	147.79	1	231420			9136	579;1959	7722	7922	9136	9136		
IEDVPAPSTSADK	13	Unmodified	_IEDVPAPSTSADK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.330264	1328.64598	1.8921	0.0012588	-1.1987	-0.00079754	0.69335	0.00046131	665.329815438247	5.3012	0.45222	5.3012	4.9908	5.443	0	534	61	0.967195187796614	0.0404405239988286	0.967195187796614	391.415924086562	0	16.3659468856609						1246	52	4	NaN	NaN	NaN	0.0017847	1	13239	71.896	38.47	1	710900			9137	1126	7723	7923	9137	9137		
IEDYFPEFAR	10	Unmodified	_IEDYFPEFAR_			0	0	0	P63092;Q5JWF2	P63092	P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.806228	1285.5979	1.5107	0.00097259	0.17691	0.0001139	1.6876	0.0010865	643.806134640578	13.567	0.23056	13.567	13.46	13.691	0	570	52	0.942920803299286	0.0344006212312528	0.942920803299286	381.723771639509	0	13.926445187325						667	27	3	NaN	NaN	NaN	0.0064365	1	11919	57.032	40.38	1	212670			9138	1424	7724	7924	9138	9138		
IEEALMDPGRQPESADDFDR	20	Unmodified	_IEEALMDPGRQPESADDFDR_			0	0	1	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.34634	2290.01719	1.5502	0.0011849	-0.36834	-0.00028154	1.1818	0.00090334	764.68018084063	9.7445	0.097556	9.7445	9.7002	9.7977	0	582	49	0.934820374997243	0.0324241729460041	0.934820374997243	565.010548054007	0	19.5973474866481						288	12	3	NaN	NaN	NaN	0.048912	1	35560	28.432	26.584	1	50569			9139	1766	7725	7925	9139	9139		
IEEAMDGSETPQLFTVLPEK	20	Unmodified	_IEEAMDGSETPQLFTVLPEK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1117.54848	2233.08242	0.81787	0.00091401	-1.9899	-0.0022238	-1.172	-0.0013098	1118.04693742522	15.854	0.088674	15.854	15.81	15.899	0	123	61	1.24149774378079	0.039641027990488	1.24149774378079	500.323608914322	0	15.975334860356						332	11	4	NaN	NaN	NaN	0.00083713	1	35017	44.16	37.956	1	59817			9140	1667	7726	7926	9140	9140		
IEEDSEVLMMIK	12	Unmodified	_IEEDSEVLMMIK_			0	0	0	O60888	O60888	O60888	CUTA	Protein CutA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.854203	1435.69385	1.5836	0.0011384	1.0601	0.00076209	2.6437	0.0019005	718.855306955004	14.205	0.16848	14.205	14.161	14.329	0	393	46	1.0618830335572	0.0301319762986474	1.0618830335572	429.405319398079	0	12.1847986056169						343	20	3	NaN	NaN	NaN	0.00032114	1	16559	68.49	49.167	1	71420			9141	293	7727	7927	9141	9141		
IEEEEQEPEPPEPFEYIDD	19	Unmodified	_IEEEEQEPEPPEPFEYIDD_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1167.49463	2332.9747	0.81626	0.00095298	0.30852	0.00036019	1.1248	0.0013132	1167.99638403584	16.28	0.12415	16.28	16.209	16.333	0	108	61	1.25141139212444	0.039641027990488	1.25141139212444	504.185253462967	0	15.9711042033804						538	15	3	NaN	NaN	NaN	4.7224E-07	1	35919	105.08	104.14	1	124020			9142	2641	7728	7928	9142	9142		
IEEELGDEAR	10	Unmodified	_IEEELGDEAR_			0	0	0	P09104	P09104	P09104	ENO2	Gamma-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.775125	1159.5357	1.035	0.00060112	3.0806	0.0017891	4.1156	0.0023903	580.776465121836	4.8667	0.13298	4.8667	4.8312	4.9642	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	365.730889507888	0	7.40489695850698						155	16	2	NaN	NaN	NaN	0.00015055	1	8334	78.816	15.936	1	61532			9143	596	7729	7929	9143	9143		
IEEELGSK	8	Unmodified	_IEEELGSK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.73474	903.454927	0.17504	7.9248E-05	2.4494	0.0011089	2.6245	0.0011882	452.735750198047	3.3326	0.70946	3.3326	3.1907	3.9002	0	783	100	0.798467866007927	0.067420275602312	0.798467866007927	324.693856532177	0	27.4161932191765						1991	81	5	NaN	NaN	NaN	0.00069273	1	2389	109.36	24.658	1	2354100			9144	544	7730	7930	9144	9144		
IEEFLEAVLCPPR	13	Unmodified	_IEEFLEAVLCPPR_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.941198	1571.80176	-1.2205	-0.00064067	1.0782	0.00056601	-0.14222	-7.4657E-05	524.941627302907	18.045	0.19507	18.045	17.903	18.098	0	693	34	0.85967808974117	0.0224047758340703	0.85967808974117	521.022177606299	0	13.5787863307798						244	23	3	NaN	NaN	NaN	0.068702	1	20720	24.821	24.497	1	43407			9145	71	7731	7931	9145	9145		
IEEFLEAVLCPPR	13	Unmodified	_IEEFLEAVLCPPR_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.908159	1571.80176	0.84642	0.00066605	1.3546	0.001066	2.201	0.001732	786.910184399822	18.018	0.20392	18.018	17.894	18.098	0	387	40	1.06589869032374	0.0260999743301487	1.06589869032374	430.672805009019	0	10.5456074366829						524	24	3	NaN	NaN	NaN	3.4977E-05	1	20721	92.445	76.157	1	141540			9146	71	7731	7931	9146	9146		
IEEFLEEVLCPPK	13	Unmodified	_IEEFLEEVLCPPK_			0	0	0	Q9Y696	Q9Y696	Q9Y696	CLIC4	Chloride intracellular channel protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.907824	1601.8011	1.4017	0.0011241	3.8228	0.0030655	5.2245	0.0041896	801.910548045217	17.424	0.38128	17.424	17.229	17.61	0	357	61	1.08596037261705	0.0400791660081454	1.08596037261705	438.706879095468	0	16.1912039145678						565	44	2	NaN	NaN	NaN	1.5351E-05	1	21646	92.445	73.121	1	165700			9147	3454	7732	7932	9147	9147		
IEEFVYEK	8	Unmodified	_IEEFVYEK_			0	0	0	Q9Y371	Q9Y371	Q9Y371	SH3GLB1	Endophilin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.76604	1055.51753	0.090463	4.7834E-05	0.10609	5.6096E-05	0.19655	0.00010393	528.765661377222	7.5092	0.14189	7.5092	7.456	7.5979	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	356.260686815023	0	7.42685078674663						173	17	2	NaN	NaN	NaN	0.016891	1	5598	58.286	21.716	1	52706			9148	3370	7733	7933	9148	9148		
IEEGHIGVYYR	11	Unmodified	_IEEGHIGVYYR_			0	0	0	O94905	O94905	O94905	ERLIN2	Erlin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.338227	1334.6619	1.6003	0.0010696	-4.8296	-0.0032278	-3.2293	-0.0021583	668.335314769952	6.4629	0.12413	6.4629	6.4185	6.5427	0	531	76	0.969216233931596	0.0504772893757327	0.969216233931596	392.215640222449	0	20.4267960812903						304	15	3	NaN	NaN	NaN	0.00064888	1	13422	55.235	0	1	91005			9149	395	7734	7934	9149	9149		
IEEGHLAVYYR	11	Unmodified	_IEEGHLAVYYR_			0	0	0	O75477	O75477	O75477	ERLIN1	Erlin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.56646	1348.67755	-1.1094	-0.00049986	-0.4073	-0.00018351	-1.5167	-0.00068337	450.566237174153	6.9771	0.079785	6.9771	6.9505	7.0303	0	828	22	0.767766820543916	0.0143431242639176	0.767766820543916	465.988566709493	0	8.70541906609628						121	10	3	NaN	NaN	NaN	0.040842	1	13856	29.31	19.795	1	27814			9150	337	7735	7935	9150	9150		
IEEGLDQINK	10	Unmodified	_IEEGLDQINK_			0	0	0	O00161	O00161	O00161	SNAP23	Synaptosomal-associated protein 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.803685	1157.59282	0.42113	0.00024418	-0.18921	-0.00010971	0.23192	0.00013447	579.803722658928	6.2944	0.13303	6.2944	6.2323	6.3653	0	633	52	0.900343422309015	0.0345104276120216	0.900343422309015	364.915222035276	0	13.9873075567946						296	16	3	NaN	NaN	NaN	0.0034092	1	8281	65.933	31.152	1	78463			9151	55	7736	7936	9151	9151		
IEELDQENEAALENGIK	17	Unmodified	_IEELDQENEAALENGIK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.968184	1913.92182	2.1952	0.002103	-2.2608	-0.0021658	-0.06559	-6.2834E-05	958.468482212264	10.658	0.11527	10.658	10.605	10.72	0	261	43	1.14997238118939	0.0279436470616286	1.14997238118939	463.916447311509	0	11.2728946206079						366	14	4	NaN	NaN	NaN	8.8029E-14	1	29925	148.57	121.19	1	79259			9152	1062	7737	7937	9152	9152		
IEELFSIVR	9	Unmodified	_IEELFSIVR_			0	0	0	Q9UJX6	Q9UJX6	Q9UJX6	ANAPC2	Anaphase-promoting complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.316232	1104.61791	-0.059792	-3.3084E-05	-7.5959	-0.0042029	-7.6557	-0.004236	553.314982493758	14.382	0.10638	14.382	14.329	14.435	0	639	28	0.896281965493857	0.0182828962008553	0.896281965493857	363.47415593684	0	7.4143634710145						163	13	3	NaN	NaN	NaN	0.0011738	1	6847	91.783	47.016	1	33618			9153	3255	7738	7938	9153	9153		
IEELLSGENR	10	Unmodified	_IEELLSGENR_			0	0	0	Q9NY93	Q9NY93	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.30131	1158.58807	0.66709	0.00038712	3.1078	0.0018034	3.7749	0.0021906	580.302887786598	7.0126	0.15967	7.0126	6.9505	7.1102	0	609	46	0.916577990479294	0.0304166222504839	0.916577990479294	371.49142968784	0	12.327935651388						314	19	2	NaN	NaN	NaN	4.9446E-05	1	8322	98.009	30.545	1	101580			9154	3111	7739	7939	9154	9154		
IEELQLIVNDK	11	Unmodified	_IEELQLIVNDK_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.369192	1312.72383	0.76625	0.00050371	-0.97268	-0.00063941	-0.20643	-0.0001357	657.368928567483	12.502	0.21277	12.502	12.458	12.671	0	504	55	0.987393073566096	0.0363260498310551	0.987393073566096	399.639726185205	0	14.7026883178771						521	25	3	NaN	NaN	NaN	7.3718E-12	1	12743	167.06	110.68	1	113460			9155	1369	7740	7940	9155	9155		
IEEMEMTNSHLAK	13	Unmodified	_IEEMEMTNSHLAK_			0	0	0	Q9Y608	Q9Y608	Q9Y608	LRRFIP2	Leucine-rich repeat flightless-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.857809	1531.70106	1.8306	0.0014038	-0.4994	-0.00038297	1.3312	0.0010208	766.858070849326	5.8687	0.062065	5.8687	5.8509	5.913	0	375	22	1.07392668217569	0.0140460810726906	1.07392668217569	434.015688859819	0	5.67656959616107						114	8	3	NaN	NaN	NaN	0.00019629	1	19478	75.474	64.687	1	24653			9156	3448	7741	7941	9156	9156		
IEEQFANLHIVK	12	Unmodified	_IEEQFANLHIVK_			0	0	0	Q96FK6	Q96FK6	Q96FK6	WDR89	WD repeat-containing protein 89	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.933031	1439.77726	-1.1744	-0.0005648	-2.524	-0.0012139	-3.6984	-0.0017787	481.265978805934	10.046	0.12411	10.046	9.9662	10.09	0	771	37	0.806643990516186	0.0245181412255862	0.806643990516186	489.270770113494	0	14.871504629344						227	15	3	NaN	NaN	NaN	0.037191	1	16677	20.183	14.687	1	46293			9157	2526	7742	7942	9157	9157		
IEEQLTLEK	9	Unmodified	_IEEQLTLEK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.803154	1101.59175	0.56965	0.00031434	-1.3244	-0.00073079	-0.75472	-0.00041646	551.802581943121	7.1457	0.19507	7.1457	7.0836	7.2787	0	633	31	0.900343422309015	0.0202988394656143	0.900343422309015	365.133551577598	0	8.23217803710395						321	23	4	NaN	NaN	NaN	0.0013369	1	6764	81.642	43.32	1	106700			9158	916	7743	7943	9158	9158		
IEEVPELPLVVEDK	14	Unmodified	_IEEVPELPLVVEDK_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.940179	1607.8658	2.137	0.0017202	0.95971	0.00077251	3.0968	0.0024927	804.941082051097	15.34	0.25725	15.34	15.225	15.482	0	369	79	1.07793901817685	0.0521891837070347	1.07793901817685	435.452337369251	0	21.0827344102067						2171	30	6	NaN	NaN	NaN	2.0432E-08	1	21857	157.74	146.38	1	2457000			9159	988	7744	7944	9159	9159		
IEEVSDTSSLQPQASLK	17	Unmodified	_IEEVSDTSSLQPQASLK_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.46782	1830.92109	2.4538	0.0022488	-2.5228	-0.0023121	-0.069025	-6.3259E-05	916.46628595715	8.8842	0.21289	8.8842	8.769	8.9819	0	294	70	1.12800004657306	0.0459864455823558	1.12800004657306	455.20092129518	0	18.5576875282719						583	25	3	NaN	NaN	NaN	4.5807E-05	1	28003	66.485	56.743	1	151460			9160	2909	7745	7945	9160	9160		
IEFEGQPVDFVDPNK	15	Unmodified	_IEFEGQPVDFVDPNK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.422684	1732.83082	3.3551	0.0029103	0.16859	0.00014624	3.5237	0.0030565	867.422928593947	13.841	0.39901	13.841	13.726	14.125	0	339	109	1.09798411722691	0.0721028331520268	1.09798411722691	443.276600004605	0	29.1092541584774						1879	46	6	NaN	NaN	NaN	3.8729E-12	1	25404	183	166.24	1	1749100			9161	922	7746	7946	9161	9161		
IEFGVDEVIEPSDTLPR	17	Unmodified	_IEFGVDEVIEPSDTLPR_			0	0	0	Q14694	Q14694	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.486013	1914.95747	2.0607	0.0019751	0.57078	0.00054709	2.6315	0.0025222	958.489307048751	15.535	0.23067	15.535	15.437	15.668	1.7764E-15	219	49	1.17788915118882	0.0318785889633038	1.17788915118882	475.176639888923	0	12.8602600445843						615	27	4	NaN	NaN	NaN	5.1503E-10	1	29953	78.157	65.986	1	140170			9162	1769	7747	7947	9162	9162		
IEFLQSHENQEIYQK	15	Unmodified	_IEFLQSHENQEIYQK_			0	0	0	O60684;O15131;P52294	O60684;P52294	O60684	KPNA6;KPNA5;KPNA1	Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.98289	1904.92684	0.74839	0.00047596	0.79774	0.00050735	1.5461	0.00098331	635.983713181826	8.6091	0.22179	8.6091	8.5116	8.7334	0	663	61	0.880024865079826	0.0406653325678452	0.880024865079826	532.53928739046	0	24.608267432548						785	26	5	NaN	NaN	NaN	6.3642E-12	1	29700	179.98	145.79	1	386670			9163	274;1208	7748	7948	9163	9163		
IEFLQSHENQEIYQK	15	Unmodified	_IEFLQSHENQEIYQK_			0	0	0	O60684;O15131;P52294	O60684;P52294	O60684	KPNA6;KPNA5;KPNA1	Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.470697	1904.92684	2.2596	0.0021545	-0.40341	-0.00038464	1.8562	0.0017698	953.971848221947	8.618	0.070924	8.618	8.5825	8.6534	0	198	37	1.1918274123006	0.0238826831723766	1.1918274123006	480.817741342651	0	9.63496699407017						247	9	4	NaN	NaN	NaN	2.5024E-06	1	29701	70.806	63.23	1	57021			9164	274;1208	7748	7948	9164	9164		
IEFVGQIELFNDK	13	Unmodified	_IEFVGQIELFNDK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.406306	1550.79806	0.93444	0.00072551	-0.21929	-0.00017026	0.71515	0.00055525	776.406760811184	16.564	0.14187	16.564	16.519	16.661	0	408	28	1.0518390438467	0.018084171566231	1.0518390438467	425.04232103379	0	7.30771338205273						155	17	2	NaN	NaN	NaN	0.00017286	1	20085	68.108	56.626	1	40185			9165	334	7749	7949	9165	9165		
IEFYELDK	8	Unmodified	_IEFYELDK_			0	0	0	O15305	O15305	O15305	PMM2	Phosphomannomutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.76604	1055.51753	0.53149	0.00028103	1.3519	0.00071485	1.8834	0.00099589	528.766302775018	10.862	0.16848	10.862	10.8	10.968	0	666	55	0.877991458330206	0.0365987959627344	0.877991458330206	356.260681088166	0	14.8506136967301						413	20	4	NaN	NaN	NaN	0.002862	1	5600	72.038	41.477	1	128220			9166	162	7750	7950	9166	9166		
IEGCHICTSVTPGEPQVFLGK	21	Unmodified	_IEGCHICTSVTPGEPQVFLGK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.048689	2328.12424	1.1559	0.00089815	-0.25826	-0.00020068	0.89759	0.00069747	777.383026235506	11.376	0.088714	11.376	11.341	11.429	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	572.296981443896	0	14.6782496971364						315	11	5	NaN	NaN	NaN	0.0011058	1	35882	45.654	43.203	1	69784			9167	2140	7751	7951	9167	9167		
IEGCIIGFDEYMNLVLDDAEEIHSK	25	Unmodified	_IEGCIIGFDEYMNLVLDDAEEIHSK_			0	0	0	P62304	P62304	P62304	SNRPE	Small nuclear ribonucleoprotein E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	970.78938	2909.34631	1.5722	0.0015263	0.67936	0.00065952	2.2515	0.0021858	971.124389089733	19.995	0.017727	19.995	19.995	20.013	0	294	40	1.12800004657306	0.0259923277309138	1.12800004657306	680.893921946017	0	15.6897315944053						113	3	5	NaN	NaN	NaN	0.00049883	1	38085	35.349	30.267	1	37318			9168	1381	7752	7952	9168	9168		
IEGDETSTEAATR	13	Unmodified	_IEGDETSTEAATR_			0	0	0	P52434	P52434	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.317885	1378.62122	2.56	0.0017672	-5.1604	-0.0035623	-2.6005	-0.0017951	690.316327059699	3.0311	0.25713	3.0311	3.0045	3.2617	0	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	386.361901232218	0	10.639045426701						602	30	5	NaN	NaN	NaN	0.00096524	1	14755	83.775	76.624	1	120570			9169	1211	7753	7953	9169	9169		
IEGDMIVCAAYAHELPK	17	Unmodified	_IEGDMIVCAAYAHELPK_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.646345	1915.9172	1.0772	0.00068906	-0.53408	-0.00034162	0.54316	0.00034743	639.980980824798	12.201	0.39906	12.201	12.139	12.538	0	558	61	0.951016745717027	0.040479730715125	0.951016745717027	575.475555964528	0	24.4949372800132						1056	46	6	NaN	NaN	NaN	9.7413E-07	1	29968	119.79	103.66	1	708890			9170	1086	7754	7954	9170	9170		
IEGDMIVCAAYAHELPK	17	Unmodified	_IEGDMIVCAAYAHELPK_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.965879	1915.9172	1.3249	0.0012705	-0.60695	-0.00058205	0.71792	0.00068846	959.467076195294	12.201	0.1774	12.201	12.157	12.334	0	114	88	1.24744674793813	0.0575386361268857	1.24744674793813	503.235319291431	0	23.2117915820989						1197	21	5	NaN	NaN	NaN	1.6389E-06	1	29969	59.77	57.381	1	307620			9171	1086	7754	7954	9171	9171		
IEGDMIVCAAYAHELPK	17	Oxidation (M)	_IEGDM(Oxidation (M))IVCAAYAHELPK_	IEGDM(1)IVCAAYAHELPK	IEGDM(65)IVCAAYAHELPK	0	1	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.977983	1931.91212	1.4333	0.00092444	0.96379	0.00062162	2.3971	0.0015461	645.313182604256	10.862	0.12415	10.862	10.8	10.924	0	549	31	0.957085760909907	0.0202258527858471	0.957085760909907	579.113565812105	0	12.2382614043562						248	15	4	NaN	NaN	NaN	0.00016983	1	30355	65.173	57.966	1	66398			9172	1086	7754	7955	9172	9172	384	
IEGDPQGVQQAK	12	Unmodified	_IEGDPQGVQQAK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.325316	1268.63608	2.3954	0.0015218	-0.93817	-0.00059604	1.4572	0.00092578	635.324861193707	3.2173	0.2128	3.2173	3.173	3.3858	0	591	43	0.928742107665821	0.028363289192291	0.928742107665821	376.037227971983	0	11.4839766131014						367	25	3	NaN	NaN	NaN	1.2904E-07	1	11471	104.39	75.293	1	98385			9173	1498	7755	7956	9173	9173		
IEGLLAAFPK	10	Unmodified	_IEGLLAAFPK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.815867	1057.61718	0.51001	0.00027021	-1.0196	-0.00054019	-0.50956	-0.00026998	529.815341451712	14.356	0.14185	14.356	14.276	14.418	0	609	70	0.916577990479294	0.0466776453794098	0.916577990479294	371.908356571889	0	18.939802790403						402	17	3	NaN	NaN	NaN	0.00055093	1	5669	51.864	33.461	1	89864			9174	1107	7756	7957	9174	9174		
IEGNLIFDPNNYLPK	15	Unmodified	_IEGNLIFDPNNYLPK_			0	0	0	P04114;CON__ENSEMBL:ENSBTAP00000032840	P04114;CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.956694	1745.89884	1.4223	0.001243	2.3939	0.0020922	3.8162	0.0033352	874.458029358155	17.406	0.3813	17.406	17.122	17.504	0	276	115	1.13998907770044	0.0758888881871538	1.13998907770044	460.207435234028	0	30.6359343949341						1126	44	3	NaN	NaN	NaN	0.00025078	1	25777	66.953	57.692	1	288000		+	9175	22;507	7757	7958	9175	9175		
IEGVFERPSDEVIR	14	Unmodified	_IEGVFERPSDEVIR_			0	0	1	Q13572	Q13572	Q13572	ITPK1	Inositol-tetrakisphosphate 1-kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.289655	1644.84713	-1.7759	-0.00097551	-0.64572	-0.00035469	-2.4217	-0.0013302	549.289246747884	9.1858	0.079874	9.1858	9.1504	9.2303	0	786	34	0.796423123669906	0.0224952996214562	0.796423123669906	482.498452483009	0	13.6283678021294						207	10	4	NaN	NaN	NaN	0.0029339	1	22888	43.613	33.87	1	52782			9176	1686	7758	7959	9176	9176		
IEGVYAR	7	Unmodified	_IEGVYAR_			0	0	0	P18077	P18077	P18077	RPL35A	60S ribosomal protein L35a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	404.221603	806.428653	-0.18265	-7.3829E-05	-1.0744	-0.0004343	-1.257	-0.00050813	404.221077277398	3.8204	0.19506	3.8204	3.7672	3.9622	0	807	61	0.782101955086014	0.0409546925598555	0.782101955086014	318.610954277057	0	16.6840315303699						460	23	3	NaN	NaN	NaN	0.014501	1	1047	72.355	47.535	1	147520			9177	750	7759	7960	9177	9177		
IEGVYARDETEFYLGK	16	Unmodified	_IEGVYARDETEFYLGK_			0	0	1	P18077	P18077	P18077	RPL35A	60S ribosomal protein L35a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.647508	1888.92069	0.35012	0.00022081	-0.11117	-7.0107E-05	0.23896	0.0001507	630.981936027765	10.773	0.17734	10.773	10.738	10.915	0	678	31	0.869855008346864	0.0203496003822382	0.869855008346864	526.417310438381	0	12.3151350500037						299	21	4	NaN	NaN	NaN	0.0011113	1	29353	48.822	35.648	1	57950			9178	750	7760	7961	9178	9178		
IEGYEDQVLITEHGDLGNSR	20	Unmodified	_IEGYEDQVLITEHGDLGNSR_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	749.029228	2244.06585	1.6098	0.0012058	1.3238	0.00099156	2.9336	0.0021973	749.364487255056	10.374	0.23943	10.374	10.303	10.543	0	474	34	1.00756305028564	0.0221701170870099	1.00756305028564	609.051758050736	0	13.4013933760335						530	28	5	NaN	NaN	NaN	5.194E-08	1	35141	103.17	87.643	1	163530			9179	1226	7761	7962	9179	9179		
IEHGALVHHSGTITCLK	17	Unmodified	_IEHGALVHHSGTITCLK_			0	0	0	Q9NWT1	Q9NWT1	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.996477	1871.9676	1.3559	0.00084743	-0.13033	-8.1456E-05	1.2256	0.00076597	625.331066799015	4.5563	0.070948	4.5563	4.5297	4.6007	0	624	25	0.906433495720521	0.0162390708699242	0.906433495720521	548.589997187239	0	9.82818031870454						139	9	3	NaN	NaN	NaN	0.00059478	1	28986	70.806	68.669	1	30623			9180	3083	7762	7963	9180	9180		
IEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK	32	Unmodified	_IEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	878.120456	3508.45272	1.108	0.00097295	0.96439	0.00084685	2.0724	0.0018198	878.372726899193	11.687	0.10644	11.687	11.651	11.758	0	483	28	1.00151498427745	0.0181517240953996	1.00151498427745	805.402147416785	0	14.5973228511397						332	13	6	NaN	NaN	NaN	2.6425E-15	1	38655	109.82	108.86	1	66850			9181	1796	7763	7964	9181	9181		
IEIEAVAIQGPLTTASL	17	Unmodified	_IEIEAVAIQGPLTTASL_			0	0	0	P52758	P52758	P52758	HRSP12	Ribonuclease UK114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.485285	1724.95602	1.1675	0.0010081	-0.51505	-0.00044474	0.65241	0.00056335	863.485209793858	19.206	0.1064	19.206	19.144	19.25	0	330	34	1.10399226369747	0.0220207732442941	1.10399226369747	445.718350524449	0	8.89051766979526						193	13	3	NaN	NaN	NaN	0.022246	1	25200	40.224	31.418	1	37147			9182	1221	7764	7965	9182	9182		
IEIESFYEGEDFSETLTR	18	Unmodified	_IEIESFYEGEDFSETLTR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.99968	2163.98481	0.79454	0.00086049	1.0218	0.0011066	1.8163	0.0019671	1083.50225250975	16.351	0.40787	16.351	16.227	16.635	0	114	127	1.24744674793813	0.0833376206287617	1.24744674793813	502.820295567194	0	33.5916920747778						2602	47	5	NaN	NaN	NaN	4.0378E-20	1	34231	176	168	1	1294100			9183	638	7765	7966	9183	9183		
IEINFPAEYPFKPPK	15	Unmodified	_IEINFPAEYPFKPPK_			0	0	1	P68036	P68036	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.322296	1788.94506	0.50795	0.00030341	-0.9216	-0.00055049	-0.41365	-0.00024708	597.322082236771	14.56	0.49651	14.56	14.196	14.693	0	633	91	0.900343422309015	0.0608881334874144	0.900343422309015	545.089961711661	0	36.8631674636237						1905	57	5	NaN	NaN	NaN	3.9159E-06	1	26949	110.58	95.607	1	757980			9184	1445	7766	7967	9184	9184		
IEIPIHIVPHVTIGK	15	Unmodified	_IEIPIHIVPHVTIGK_			0	0	0	P46736	P46736	P46736	BRCC3	Lys-63-specific deubiquitinase BRCC36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.006531	1664.99776	-1.0063	-0.00055953	-0.75075	-0.00041742	-1.7571	-0.00097695	556.006216894542	13.292	0.097534	13.292	13.247	13.345	0	723	28	0.839303037468863	0.0183490160938558	0.839303037468863	508.425126172077	0	11.1152949604311						230	12	3	NaN	NaN	NaN	0.0033002	1	23487	51.569	45.541	1	60646			9185	1084	7767	7968	9185	9185		
IELFADVVPK	10	Unmodified	_IELFADVVPK_			0	0	0	O43447	O43447	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.826432	1129.63831	0.85931	0.00048622	-1.4802	-0.00083754	-0.6209	-0.00035132	565.825286170365	14.515	0.23054	14.515	14.427	14.657	0	621	64	0.908462957275599	0.0425950882800211	0.908462957275599	368.313386419788	0	17.2691039118561						923	27	4	NaN	NaN	NaN	0.0079372	1	7530	41.796	20.521	1	289180			9186	203	7768	7969	9186	9186		
IELGDVTPHNIK	12	Unmodified	_IELGDVTPHNIK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	445.913748	1334.71942	-0.96685	-0.00043113	0.11104	4.9514E-05	-0.85581	-0.00038162	445.914060395099	8.3342	0.15959	8.3342	8.2544	8.414	0	765	37	0.810730346695089	0.0245147306165753	0.810730346695089	492.11697602171	0	14.88055202102						294	19	3	NaN	NaN	NaN	0.022006	1	13438	46.033	37.559	1	77960			9187	2836	7769	7970	9187	9187		
IELGDVTPHNIK	12	Unmodified	_IELGDVTPHNIK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.366984	1334.71942	1.7887	0.0011955	-0.0236	-1.5773E-05	1.7651	0.0011797	668.367023226683	8.343	0.1686	8.343	8.2454	8.414	0	447	40	1.02569221487577	0.0261757253352226	1.02569221487577	415.06974103901	0	10.592604076375						407	20	3	NaN	NaN	NaN	5.4335E-05	1	13440	106.35	79.406	1	108590			9188	2836	7769	7970	9188	9188		
IELLGSYDPQK	11	Unmodified	_IELLGSYDPQK_			0	0	0	P24666	P24666	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.834985	1261.65542	1.8537	0.0011712	0.42215	0.00026673	2.2758	0.0014379	631.835311454612	10.871	0.31923	10.871	10.746	11.066	0	540	46	0.963152256458504	0.030328287920973	0.963152256458504	389.992738026535	0	12.2803139032743						593	37	2	NaN	NaN	NaN	9.9912E-05	1	11276	102.55	70.593	1	394450			9189	831	7770	7971	9189	9189		
IELPELFDR	9	Unmodified	_IELPELFDR_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.305864	1130.59717	0.19983	0.00011317	-0.58859	-0.00033332	-0.38876	-0.00022016	566.305071673886	15.606	0.22167	15.606	15.508	15.73	0	657	55	0.884090832094921	0.0365835629359025	0.884090832094921	358.428654169888	0	14.8317308039307						505	26	2	NaN	NaN	NaN	0.00085369	1	7548	94.806	43.376	1	173580			9190	3360	7771	7972	9190	9190		
IELVVAPAGVTLK	13	Unmodified	_IELVVAPAGVTLK_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.408121	1308.80169	1.3296	0.00087141	-1.2436	-0.00081507	0.085958	5.6337E-05	655.407148270722	14.48	0.088663	14.48	14.444	14.533	0	444	58	1.02770517576159	0.0382674073234339	1.02770517576159	415.968722239012	0	15.4889212423519						239	11	3	NaN	NaN	NaN	0.0065094	1	12627	39.293	29.779	1	51174			9191	786	7772	7973	9191	9191		
IELWEQEHSK	10	Unmodified	_IELWEQEHSK_			0	0	0	O43663	O43663	O43663	PRC1	Protein regulator of cytokinesis 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.822409	1297.63027	1.6388	0.0010649	-2.1588	-0.0014028	-0.52002	-0.00033792	650.321620777401	6.4895	0.13303	6.4895	6.4629	6.5959	0	528	52	0.971237000454584	0.0343387884231721	0.971237000454584	393.148304737215	0	13.9000433972154						279	16	2	NaN	NaN	NaN	0.042858	1	12284	37.749	32.253	1	63444			9192	215	7773	7974	9192	9192		
IENLCAMGFDR	11	Unmodified	_IENLCAMGFDR_			0	0	0	P61086	P61086	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.302472	1324.59039	1.5752	0.0010448	-1.2517	-0.00083024	0.32354	0.0002146	663.301372836317	11.03	0.24829	11.03	10.924	11.172	0	525	55	0.973257487423603	0.0363612334890161	0.973257487423603	393.881700055559	0	14.7155553877976						744	29	4	NaN	NaN	NaN	0.015505	1	13122	45.939	27.603	1	242060			9193	1327	7774	7975	9193	9193		
IENLELMSQHGCNAWK	16	Unmodified	_IENLELMSQHGCNAWK_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.450927	1928.8873	2.004	0.0019348	-0.25551	-0.00024668	1.7485	0.0016881	965.450120073429	10.028	0.079794	10.028	9.9928	10.073	0	228	25	1.17191150690002	0.0159436712794023	1.17191150690002	472.740617106681	0	6.43156156006046						118	10	3	NaN	NaN	NaN	0.0017361	1	30260	39.166	37.691	1	21309			9194	370	7775	7976	9194	9194		
IENLELMSQHGCNAWK	16	Unmodified	_IENLELMSQHGCNAWK_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.96971	1928.8873	0.79404	0.00051134	1.7704	0.0011401	2.5644	0.0016514	644.305728133593	10.037	0.097538	10.037	10.002	10.099	0	624	46	0.906433495720521	0.0304419315193813	0.906433495720521	548.47101155109	0	18.4200132197586						360	12	4	NaN	NaN	NaN	8.6421E-07	1	30262	108.5	92.88	1	99849			9195	370	7775	7976	9195	9195		
IENLSNLHQLQMLELGSNR	19	Unmodified	_IENLSNLHQLQMLELGSNR_			0	0	0	Q15435	Q15435	Q15435	PPP1R7	Protein phosphatase 1 regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.05131	2208.1321	0.058886	4.3402E-05	-1.0613	-0.00078226	-1.0024	-0.00073886	737.384645000346	14.081	0.053207	14.081	14.054	14.107	0	591	22	0.928742107665821	0.0141865549073745	0.928742107665821	561.462245488086	0	8.5763474147343						111	7	3	NaN	NaN	NaN	6.306E-06	1	34766	52.149	27.678	1	24188			9196	1849	7776	7977	9196	9196		
IENVPTGPNNK	11	Unmodified	_IENVPTGPNNK_			0	0	0	O43447	O43447	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.809302	1181.60405	2.0481	0.0012121	-1.2354	-0.00073111	0.81269	0.00048096	591.808303552575	3.9268	0.097548	3.9268	3.8824	3.98	4.4409E-16	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	364.827908252062	0	6.58205469667996						100	12	2	NaN	NaN	NaN	0.013863	1	8921	43.272	31.205	1	18947			9197	203	7777	7978	9197	9197		
IENVVLDANCSR	12	Unmodified	_IENVVLDANCSR_			0	0	0	Q9H074	Q9H074	Q9H074	PAIP1	Polyadenylate-binding protein-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.343183	1388.67181	1.1911	0.00082824	0.13015	9.05E-05	1.3213	0.00091874	695.343349036926	7.5713	0.12413	7.5713	7.5181	7.6422	0	501	64	0.98941132619024	0.0423598959257468	0.98941132619024	400.22839867223	0	17.1350709917224						588	15	5	NaN	NaN	NaN	0.00064418	1	15097	62.705	53.728	1	290340			9198	2838	7778	7979	9198	9198		
IENVVLVVPVK	11	Unmodified	_IENVVLVVPVK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.884281	1207.75401	1.3948	0.00084367	-0.47689	-0.00028846	0.91789	0.00055521	604.883994165215	12.937	0.079799	12.937	12.901	12.981	0	510	43	0.983355730988811	0.0282770433233913	0.983355730988811	398.36571778972	0	11.4552692433761						182	10	3	NaN	NaN	NaN	0.00055167	1	9685	74.849	68.158	1	35022			9199	3005	7779	7980	9199	9199		
IEPELDGSSPVTSHDSSTNGLINFIK	26	Unmodified	_IEPELDGSSPVTSHDSSTNGLINFIK_			0	0	0	CON__Q3ZBD7	CON__Q3ZBD7	CON__Q3ZBD7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	919.790766	2756.35047	1.7273	0.0015888	2.3749	0.0021844	4.1023	0.0037732	920.126938051075	15.021	0.15074	15.021	14.967	15.118	1.7764E-15	234	58	1.16792504164217	0.037879242934697	1.16792504164217	705.1799926376	0	22.8710604716971						704	18	4	NaN	NaN	NaN	0.039538	1	37778	9.5402	6.1437	1	164980		+	9200	42	7780	7981	9200	9200		
IEPEPFENCLLR	12	Unmodified	_IEPEPFENCLLR_			0	0	0	P48637	P48637	P48637	GSS	Glutathione synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.876859	1515.73916	2.2248	0.0016884	-6.0283	-0.0045747	-3.8035	-0.0028864	758.87272494228	7.6068	0.26608	7.6068	7.5003	7.7664	0	396	52	1.05987478976334	0.0341542869756604	1.05987478976334	428.37719187094	0	13.8043830141998						503	31	2	NaN	NaN	NaN	0.053717	1	19000	19.324	0	1	235800			9201	1112	7781	7982	9201	9201		
IEPGVDPDDTYNETPYEK	18	Unmodified	_IEPGVDPDDTYNETPYEK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.46293	2080.91131	2.2427	0.0023356	-1.07	-0.0011144	1.1726	0.0012212	1041.96325481509	8.769	0.21302	8.769	8.6712	8.8842	0	234	88	1.16792504164217	0.0578077749261638	1.16792504164217	470.886576400706	0	23.3070653113573						1315	25	5	NaN	NaN	NaN	3.6366E-05	1	33039	87.251	80.396	1	396440			9202	2892	7782	7983	9202	9202		
IEPHHTAVLGEGDSVQVENK	20	Unmodified	_IEPHHTAVLGEGDSVQVENK_			0	0	0	O00625	O00625	O00625	PIR	Pirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.04001	2158.06546	1.3743	0.0014843	0.1879	0.00020294	1.5622	0.0016873	1080.54189993871	5.381	0.053208	5.381	5.3544	5.4076	0	114	25	1.24744674793813	0.015862925037432	1.24744674793813	502.829094740862	0	6.39413285552905						97	7	3	NaN	NaN	NaN	7.2366E-06	1	34148	61.23	53.918	1	14172			9203	95	7783	7984	9203	9203		
IEPHHTAVLGEGDSVQVENK	20	Unmodified	_IEPHHTAVLGEGDSVQVENK_			0	0	0	O00625	O00625	O00625	PIR	Pirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.36243	2158.06546	1.2969	0.00093427	1.6976	0.0012229	2.9945	0.0021571	720.6975969593	5.3898	0.14185	5.3898	5.3455	5.4873	0	612	43	0.914549654013882	0.0284026223535851	0.914549654013882	552.962439731473	0	17.1730242119492						520	17	5	NaN	NaN	NaN	5.9783E-16	1	34149	139.94	123.81	1	176150			9204	95	7783	7984	9204	9204		
IEPHTGLLLLSVQK	14	Unmodified	_IEPHTGLLLLSVQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.643369	1546.90828	-1.8624	-0.00096221	-0.80804	-0.00041747	-2.6705	-0.0013797	516.642933111943	12.121	0.17737	12.121	12.068	12.245	0	780	25	0.800512323802183	0.0163545256042036	0.800512323802183	485.231880173525	0	9.91332297119607						317	21	3	NaN	NaN	NaN	0.017727	1	19958	42.061	33.255	1	88755			9205	718	7784	7985	9205	9205		
IEPHTGLLLLSVQK	14	Unmodified	_IEPHTGLLLLSVQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.643369	1546.90828	-0.86714	-0.000448	-0.36335	-0.00018772	-1.2305	-0.00063572	516.643028996369	12.139	0.19511	12.139	12.059	12.254	0	723	22	0.839303037468863	0.0142734399244295	0.839303037468863	508.744933949857	0	8.651869381398						289	23	3	NaN	NaN	NaN	0.002594	1	19959	96.957	95.807	1	68187			9206	718	7784	7985	9206	9206		
IEPIPGESPK	10	Unmodified	_IEPIPGESPK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.792589	1065.57063	1.6289	0.00086948	-1.8713	-0.00099888	-0.24241	-0.0001294	533.79446016348	5.6381	0.27491	5.6381	5.5317	5.8066	0	636	73	0.898312834727904	0.0487375152988332	0.898312834727904	364.462165657208	0	19.7737132186745						703	32	4	NaN	NaN	NaN	0.0074518	1	5859	50.834	38.007	1	188240			9207	288	7785	7986	9207	9207		
IEPPDTGLYYDEYLK	15	Unmodified	_IEPPDTGLYYDEYLK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.438	1814.86145	1.7755	0.0016129	2.3861	0.0021676	4.1616	0.0037805	908.439895560616	13.983	0.19508	13.983	13.868	14.063	0	249	49	1.15795408347545	0.0319224291995859	1.15795408347545	467.319849955334	0	12.8830538590838						601	23	4	NaN	NaN	NaN	0.038196	1	27600	23.149	12.664	1	149360			9208	1467	7786	7987	9208	9208		
IEPSVNFLK	9	Unmodified	_IEPSVNFLK_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.797675	1045.5808	0.36633	0.00019188	-2.7191	-0.0014243	-2.3528	-0.0012324	523.79674296018	11.083	0.15962	11.083	10.995	11.154	0	690	40	0.86171403876517	0.0264746954397943	0.86171403876517	349.698637453283	0	10.7438947328206						336	19	2	NaN	NaN	NaN	0.031463	1	5379	49.96	14.327	1	109980			9209	1607	7787	7988	9209	9209		
IEPVFHVMGFSVTGR	15	Unmodified	_IEPVFHVMGFSVTGR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.292342	1674.8552	-1.9501	-0.0010907	0.44636	0.00024965	-1.5038	-0.00084104	559.292594050404	14.817	0.097538	14.817	14.772	14.87	0	732	52	0.833184998970724	0.0346688965431766	0.833184998970724	504.694504496674	0	21.0003799683386						355	12	4	NaN	NaN	NaN	0.0032734	1	23771	55.604	34.453	1	84247			9210	1452;1818	7788	7989	9210	9210		
IEQEFLTEALPVK	13	Unmodified	_IEQEFLTEALPVK_			0	0	0	P31350	P31350	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.916507	1515.81846	1.8323	0.0013905	-1.7937	-0.0013613	0.038543	2.9251E-05	758.915607942026	14.356	0.19507	14.356	14.249	14.444	0	414	43	1.04781950764076	0.0281367598695683	1.04781950764076	423.504505338787	0	11.3722301250409						541	23	4	NaN	NaN	NaN	0.0046442	1	19019	62.705	55.148	1	212410			9211	923	7789	7990	9211	9211		
IEQFVYSSPHDNK	13	Unmodified	_IEQFVYSSPHDNK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.375537	1562.73652	3.1155	0.0024375	-0.82632	-0.00064649	2.2892	0.001791	782.374461169654	5.6736	0.204	5.6736	5.5849	5.7889	0	366	61	1.07994477139643	0.040134443533411	1.07994477139643	436.370189730049	0	16.2170096131293						629	24	4	NaN	NaN	NaN	1.9821E-11	1	20432	147.72	125.72	1	184720			9212	1139	7790	7991	9212	9212		
IEQLQNHENEDIYK	14	Unmodified	_IEQLQNHENEDIYK_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.926123	1771.83769	3.2595	0.002891	-1.9951	-0.0017695	1.2644	0.0011215	886.924378275882	5.5228	0.1064	5.5228	5.4962	5.6026	0	330	43	1.10399226369747	0.0280360922618905	1.10399226369747	445.624328148162	0	11.3167140648809						325	13	4	NaN	NaN	NaN	6.7189E-06	1	26459	66.619	53.445	1	89407			9213	96	7791	7992	9213	9213		
IEQLQNHENEDIYK	14	Unmodified	_IEQLQNHENEDIYK_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.619841	1771.83769	0.3608	0.00021345	1.0984	0.00064986	1.4592	0.00086331	591.620539116683	5.5228	0.097528	5.5228	5.4873	5.5849	0	711	37	0.847456455381371	0.0244568589772431	0.847456455381371	513.108946769207	0	14.8078795924081						308	12	4	NaN	NaN	NaN	7.5269E-08	1	26460	108.5	94.04	1	113260			9214	96	7791	7992	9214	9214		
IEQLSPFPFDLLLK	14	Unmodified	_IEQLSPFPFDLLLK_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.471449	1658.92835	2.0698	0.0017189	-3.1094	-0.0025822	-1.0395	-0.00086329	830.468828374652	20.084	0.088688	20.084	20.057	20.146	0	342	55	1.09598084995137	0.036051375024104	1.09598084995137	442.624252450773	0	14.5597552371236						364	11	3	NaN	NaN	NaN	0.00032578	1	23311	46.358	22.554	1	92320			9215	1526	7792	7993	9215	9215		
IEQSQHLFQAHK	12	Unmodified	_IEQSQHLFQAHK_			0	0	0	P53367	P53367	P53367	ARFIP1	Arfaptin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.256397	1464.74736	-0.13003	-6.3618E-05	2.4854	0.001216	2.3554	0.0011524	489.591584712465	3.5455	0.079798	3.5455	3.5278	3.6076	0	819	22	0.773912161060781	0.0143351345420983	0.773912161060781	469.341165649603	0	8.69358190018659						125	10	3	NaN	NaN	NaN	0.00038198	1	17418	51.872	42.895	1	29863			9216	1233	7793	7994	9216	9216		
IEQVDKEDEITEK	13	Unmodified	_IEQVDKEDEITEK_			0	0	1	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.929792	1574.76755	-0.044576	-2.3444E-05	-0.48895	-0.00025715	-0.53353	-0.0002806	525.929581914058	4.3258	0.10636	4.3258	4.2904	4.3968	0	849	34	0.753417699604308	0.0225549061059918	0.753417699604308	456.613809800987	0	13.6695509173323						243	13	4	NaN	NaN	NaN	2.3836E-05	1	20819	82.437	59.539	1	76114			9217	3357	7794	7995	9217	9217		
IESEGLLSLTTQLVK	15	Unmodified	_IESEGLLSLTTQLVK_			0	0	0	Q92552	Q92552	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.966728	1629.9189	1.7668	0.0014417	0.37627	0.00030703	2.1431	0.0017487	815.966975266151	17.752	0.11527	17.752	17.716	17.832	0	297	49	1.12600091227925	0.0319971654265232	1.12600091227925	454.815214441502	0	12.9243213715756						335	14	4	NaN	NaN	NaN	3.4323E-09	1	22493	135.5	111.67	1	126430			9218	2412	7795	7996	9218	9218		
IESIQLMMDSETGR	14	Unmodified	_IESIQLMMDSETGR_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.381648	1608.74874	2.4849	0.0020013	-1.0908	-0.00087854	1.394	0.0011227	805.381410984984	12.955	0.15961	12.955	12.901	13.061	0	411	34	1.04982941439551	0.0221059271192692	1.04982941439551	424.09499026176	0	8.93003455401538						480	19	5	NaN	NaN	NaN	7.9892E-13	1	21865	147.72	117.37	1	142430			9219	1753	7796	7997	9219	9219		
IESIQLMMDSETGR	14	Oxidation (M)	_IESIQLM(Oxidation (M))MDSETGR_	IESIQLM(0.739)M(0.261)DSETGR	IESIQLM(4.5)M(-4.5)DSETGR	0	1	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.379105	1624.74366	2.3992	0.0019515	-1.166	-0.00094836	1.2333	0.0010031	813.378562087729	10.126	0.23051	10.126	9.9928	10.223	0	408	46	1.0518390438467	0.0301361332726353	1.0518390438467	424.87110194261	0	12.1729386513437						577	27	5	NaN	NaN	NaN	6.6945E-11	1	22323	138	132.5	2	104870			9220	1753	7796	7998	9220	9220	562	
IESLIDRDYMER	12	Unmodified	_IESLIDRDYMER_			0	0	1	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.920574	1538.73989	-1.6426	-0.00084414	-2.6537	-0.0013638	-4.2963	-0.002208	513.919131750233	9.2036	0.070949	9.2036	9.1681	9.2391	0	789	34	0.794378096728713	0.022498430910932	0.794378096728713	481.536260597528	0	13.6381029824163						191	9	4	NaN	NaN	NaN	0.014588	1	19683	32.549	23.287	1	55349			9221	1696	7797	7999	9221	9221		
IESLPPLLIGK	11	Unmodified	_IESLPPLLIGK_			0	0	0	Q8N9N7	Q8N9N7	Q8N9N7	LRRC57	Leucine-rich repeat-containing protein 57	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.371007	1178.72746	-0.46365	-0.00027373	-0.26592	-0.00015699	-0.72957	-0.00043072	590.370899148801	14.861	0.088656	14.861	14.817	14.905	0	606	37	0.918606045818476	0.0243383549190614	0.918606045818476	372.238579820384	0	9.86241568023189						222	11	3	NaN	NaN	NaN	0.00074347	1	8857	52.591	48.051	1	48919			9222	2278	7798	8000	9222	9222		
IESLSSQLSNLQK	13	Unmodified	_IESLSSQLSNLQK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.893563	1445.77257	1.9336	0.0013998	-0.94236	-0.00068217	0.99129	0.00071759	723.893094977733	10.684	0.2128	10.684	10.613	10.826	0	447	43	1.02569221487577	0.0281717327026458	1.02569221487577	414.742854458866	0	11.3913556783334						635	25	5	NaN	NaN	NaN	5.8917E-33	1	16867	219.93	154.53	1	406340			9223	784	7799	8001	9223	9223		
IESSLQEDEPENDAK	15	Unmodified	_IESSLQEDEPENDAK_			0	0	0	Q9NPL8	Q9NPL8	Q9NPL8	TIMMDC1	Complex I assembly factor TIMMDC1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.383953	1702.75335	2.5262	0.0021533	0.27874	0.00023759	2.8049	0.0023909	852.385763241484	5.177	0.11527	5.177	5.1238	5.2391	0	381	34	1.06991323971056	0.0220785024437311	1.06991323971056	432.004411298314	0	8.91475130556637						203	14	3	NaN	NaN	NaN	2.3173E-08	1	24571	150.44	145.29	1	43014			9224	2993	7800	8002	9224	9224		
IESVHFSDQFSGPK	14	Unmodified	_IESVHFSDQFSGPK_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.591334	1576.75217	-1.0123	-0.00053308	0.040211	2.1175E-05	-0.97211	-0.00051191	526.590940849886	8.769	0.21306	8.769	8.7068	8.9198	0	771	46	0.806643990516186	0.0306540760963989	0.806643990516186	488.866598263542	0	18.577903115064						489	25	5	NaN	NaN	NaN	0.0015003	1	20871	79.889	54.033	1	222150			9225	2468	7801	8003	9225	9225		
IETAVTSTPSASGQFSK	17	Unmodified	_IETAVTSTPSASGQFSK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.930874	1709.84719	2.7889	0.0023871	-1.6786	-0.0014367	1.1103	0.00095038	855.929495362929	6.9771	0.097518	6.9771	6.9328	7.0303	0	354	55	1.08796502040166	0.0360662768322055	1.08796502040166	439.278564011587	0	14.5621798486193						277	12	3	NaN	NaN	NaN	0.00019069	1	24749	50.641	43.066	1	67866			9226	978	7802	8004	9226	9226		
IETIEVMEDR	10	Oxidation (M)	_IETIEVM(Oxidation (M))EDR_	IETIEVM(1)EDR	IETIEVM(49)EDR	0	1	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.800285	1249.58602	1.7696	0.0011074	2.0877	0.0013065	3.8574	0.0024139	625.802004627782	6.2234	0.3636	6.2234	6.0727	6.4363	0	552	73	0.955063035883597	0.0485555152659193	0.955063035883597	386.757737717794	0	19.6628081418676						644	42	3	NaN	NaN	NaN	0.026455	1	10903	49.16	37.093	1	236690			9227	1204	7803	8005	9227	9227	432	
IETMLGDVAVAVHPK	15	Unmodified	_IETMLGDVAVAVHPK_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.288598	1578.84396	0.20767	0.0001095	-0.3152	-0.0001662	-0.10752	-5.6695E-05	527.288025949548	12.352	0.24827	12.352	12.272	12.52	0	651	43	0.888155670855968	0.0284420373903148	0.888155670855968	538.260553667794	0	17.2370985126927						672	29	4	NaN	NaN	NaN	0.0026213	1	20945	48.701	43.872	1	257110			9228	858	7804	8006	9228	9228		
IETMLGDVAVAVHPK	15	Unmodified	_IETMLGDVAVAVHPK_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.429258	1578.84396	1.9092	0.0015091	0.90579	0.00071596	2.815	0.002225	790.430475403604	12.352	0.14189	12.352	12.298	12.44	0	267	37	1.14597988355104	0.0239582842572883	1.14597988355104	463.011308962122	0	9.67988767837704						426	17	5	NaN	NaN	NaN	3.4329E-08	1	20946	105.94	103.06	1	136190			9229	858	7804	8006	9229	9229		
IETMLGDVAVAVHPK	15	Oxidation (M)	_IETM(Oxidation (M))LGDVAVAVHPK_	IETM(1)LGDVAVAVHPK	IETM(69)LGDVAVAVHPK	0	1	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.426716	1594.83888	1.4787	0.0011806	0.6391	0.00051028	2.1178	0.0016909	798.427392069197	9.5317	0.097529	9.5317	9.4608	9.5583	0	276	16	1.13998907770044	0.00998742369173589	1.13998907770044	460.550672609377	0	4.03487611314864						105	12	2	NaN	NaN	NaN	0.00082214	1	21435	68.548	61.408	1	21454			9230	858	7804	8007	9230	9230	290	
IETNENNLESAK	12	Unmodified	_IETNENNLESAK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.330795	1360.64704	3.1839	0.0021693	0.47481	0.0003235	3.6587	0.0024928	681.33376727793	3.9356	0.25718	3.9356	3.9002	4.1573	0	531	70	0.969216233931596	0.0464648012234402	0.969216233931596	392.138846301815	0	18.7993689204848						662	29	4	NaN	NaN	NaN	0.0028056	1	14224	55.754	34.666	1	401920			9231	1567	7805	8008	9231	9231		
IETVNESWNALATPSDK	17	Unmodified	_IETVNESWNALATPSDK_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.960162	1873.90577	1.4607	0.0013701	0.77094	0.00072312	2.2317	0.0020932	938.460979111048	11.864	0.15075	11.864	11.802	11.953	0	258	46	1.15196821829984	0.0299375645807289	1.15196821829984	464.793009996467	0	12.079127299169						557	18	5	NaN	NaN	NaN	3.5684E-10	1	29019	130.78	118.76	1	121090			9232	793	7806	8009	9232	9232		
IEVGLVVGNSQVAFEK	16	Unmodified	_IEVGLVVGNSQVAFEK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.964519	1687.91449	2.1549	0.0018208	2.4648	0.0020827	4.6197	0.0039035	845.469081012308	13.895	0.1064	13.895	13.85	13.957	0	309	37	1.11800162319566	0.0240011742014585	1.11800162319566	451.453338845371	0	9.69176609823353						179	13	2	NaN	NaN	NaN	0.0027074	1	24157	31.722	27.986	1	39855			9233	1082	7807	8010	9233	9233		
IEVIEIMTDR	10	Unmodified	_IEVIEIMTDR_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.823563	1217.63257	1.1473	0.00069966	0.085222	5.1971E-05	1.2325	0.00075163	609.823435409014	13.717	0.42562	13.717	13.54	13.966	0	579	70	0.936845902828289	0.0465871696119698	0.936845902828289	379.489404401833	0	18.8711261856839						1579	49	4	NaN	NaN	NaN	1.6633E-07	1	9957	166.61	130.04	1	3293000			9234	608	7808	8011	9234	9234		
IEVIEIMTDR	10	Oxidation (M)	_IEVIEIM(Oxidation (M))TDR_	IEVIEIM(1)TDR	IEVIEIM(130)TDR	0	1	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.821021	1233.62749	1.6851	0.0010411	-0.82791	-0.0005115	0.85714	0.00052956	617.820806517245	9.913	0.42559	9.913	9.7179	10.143	0	552	73	0.955063035883597	0.0485756871026857	0.955063035883597	386.812422156502	0	19.6737581501336						878	49	5	NaN	NaN	NaN	6.1919E-06	1	10430	134.66	82.794	1	437370			9235	608	7808	8012	9235	9235	167	
IEVIEIMTDRGSGK	14	Unmodified	_IEVIEIMTDRGSGK_			0	0	1	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.608107	1546.80249	-0.37605	-0.00019427	-0.86981	-0.00044935	-1.2459	-0.00064362	516.607927305402	11.154	0.16848	11.154	11.119	11.287	0	720	28	0.841341816837976	0.0183490160938558	0.841341816837976	509.981054741455	0	11.122293452834						305	20	4	NaN	NaN	NaN	0.026342	1	19952	14.975	13.825	1	84195			9236	608	7809	8013	9236	9236		
IEVLDSPASK	10	Unmodified	_IEVLDSPASK_			0	0	0	Q8N5I9	Q8N5I9	Q8N5I9	C12orf45	Uncharacterized protein C12orf45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.790047	1057.56554	0.46562	0.00024668	-1.4829	-0.00078564	-1.0173	-0.00053896	529.789975173854	6.4008	0.09752	6.4008	6.3565	6.454	0	654	28	0.886123392477847	0.0182955837794518	0.886123392477847	359.55140408263	0	7.42357429253593						107	12	2	NaN	NaN	NaN	0.020363	1	5659	50.834	36.299	1	27761			9237	2256	7810	8014	9237	9237		
IEVLEEELR	9	Unmodified	_IEVLEEELR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.308603	1128.60265	1.2882	0.00072823	-0.41278	-0.00023335	0.87542	0.00049488	565.308790831792	10.676	0.16848	10.676	10.622	10.791	0	585	37	0.932794566565362	0.024311389219916	0.932794566565362	378.182202722817	0	9.85654832906374						429	20	4	NaN	NaN	NaN	7.3668E-06	1	7495	125.5	74.068	1	161720			9238	718	7811	8015	9238	9238		
IEVLQQHENEDIYK	14	Unmodified	_IEVLQQHENEDIYK_			0	0	0	O00505	O00505	O00505	KPNA3	Importin subunit alpha-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.438866	1756.86318	3.1612	0.0027801	-3.8395	-0.0033766	-0.67832	-0.00059654	879.437353016087	7.4472	0.12413	7.4472	7.394	7.5181	0	333	49	1.10198982404297	0.0320412505786125	1.10198982404297	444.845490973777	0	12.9342445221172						310	15	4	NaN	NaN	NaN	0.00082655	1	26064	70.806	62.432	1	82897			9239	87	7812	8016	9239	9239		
IEVLQQHENEDIYK	14	Unmodified	_IEVLQQHENEDIYK_			0	0	0	O00505	O00505	O00505	KPNA3	Importin subunit alpha-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.628336	1756.86318	0.45189	0.00026509	0.73726	0.0004325	1.1891	0.00069759	586.628765613359	7.4472	0.097551	7.4472	7.4117	7.5092	0	690	34	0.86171403876517	0.0223923326891349	0.86171403876517	521.775967548633	0	13.558768372031						302	12	4	NaN	NaN	NaN	7.417E-06	1	26065	71.896	63.09	1	115530			9240	87	7812	8016	9240	9240		
IEVPLYSLLEQTHLK	15	Unmodified	_IEVPLYSLLEQTHLK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.004855	1781.99274	0.8284	0.0004929	-0.68648	-0.00040846	0.14192	8.4445E-05	595.338760001432	17.77	0.39013	17.77	17.513	17.903	0	576	43	0.938871150116794	0.0283554323651288	0.938871150116794	568.432628768225	0	17.1675878603412						970	45	5	NaN	NaN	NaN	0.0031796	1	26737	71.896	48.092	1	578170			9241	2415	7813	8017	9241	9241		
IEVPLYSLLEQTHLK	15	Unmodified	_IEVPLYSLLEQTHLK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.003645	1781.99274	1.7162	0.0015309	0.23034	0.00020546	1.9466	0.0017363	892.003483720743	17.787	0.24827	17.787	17.61	17.858	0	171	37	1.20972836110953	0.023856471005451	1.20972836110953	488.282882372188	0	9.62919180888366						689	29	4	NaN	NaN	NaN	0.00012237	1	26739	65.408	56.601	1	178160			9242	2415	7813	8017	9242	9242		
IEWLESHQDADIEDFK	16	Unmodified	_IEWLESHQDADIEDFK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.974172	1973.90069	0.75784	0.0004994	0.44833	0.00029544	1.2062	0.00079484	659.309087315781	12.653	0.37245	12.653	12.6	12.972	0	645	97	0.892219381832517	0.0650014183163196	0.892219381832517	539.782386479064	0	39.3251048091366						2471	43	6	NaN	NaN	NaN	1.6889E-12	1	31180	167.59	151.97	1	2640600			9243	638	7814	8018	9243	9243		
IEWLESHQDADIEDFK	16	Unmodified	_IEWLESHQDADIEDFK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.95762	1973.90069	2.3895	0.0023607	-0.24111	-0.0002382	2.1484	0.0021225	988.458750656187	12.653	0.3015	12.653	12.582	12.884	0	213	97	1.18187287897418	0.063765995618557	1.18187287897418	476.681296977315	0	25.7185506455535						1620	35	6	NaN	NaN	NaN	2.4461E-18	1	31181	171.51	164.65	1	1305700			9244	638	7814	8018	9244	9244		
IEYDTFGELK	10	Unmodified	_IEYDTFGELK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.800611	1213.58667	1.5239	0.00092626	1.1535	0.00070112	2.6775	0.0016274	607.801109083715	10.879	0.24832	10.879	10.782	11.03	0	555	52	0.953040030838688	0.034395858934352	0.953040030838688	386.063600949802	0	13.9332963236304						656	29	3	NaN	NaN	NaN	0.0064412	1	9827	74.424	57.967	1	541310			9245	571	7815	8019	9245	9245		
IEYEPFR	7	Unmodified	_IEYEPFR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.239993	952.465432	0.32326	0.00015427	0.48011	0.00022913	0.80336	0.0003834	477.240143617051	8.21	0.10646	8.21	8.1656	8.2721	0	681	37	0.867820189810857	0.0244195217531761	0.867820189810857	352.62372226335	0	9.92245024671826						236	13	3	NaN	NaN	NaN	0.01859	1	3286	80.294	48.166	1	70592			9246	2110	7816	8020	9246	9246		
IEYNDQNDGSCDVK	14	Unmodified	_IEYNDQNDGSCDVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.843941	1655.67333	3.8864	0.0032212	-3.0652	-0.0025406	0.82119	0.00068064	828.841568359396	4.0332	0.19511	4.0332	3.9977	4.1928	0	432	55	1.035754240522	0.0362108052293146	1.035754240522	418.307867114728	0	14.6243810639361						617	23	5	NaN	NaN	NaN	6.7856E-17	1	23201	184.43	176.88	1	198220			9247	326	7817	8021	9247	9247		
IEYQFFEDR	9	Unmodified	_IEYQFFEDR_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.790578	1245.5666	0.51771	0.00032294	3.3175	0.0020694	3.8352	0.0023924	623.792124436585	11.651	0.15067	11.651	11.58	11.731	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	383.493669705011	0	9.83583003880148						287	18	3	NaN	NaN	NaN	0.024884	1	10779	30.593	11.337	1	70188			9248	3121	7818	8022	9248	9248		
IFANTESYLK	10	Unmodified	_IFANTESYLK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.311146	1184.60774	1.4224	0.00084391	5.308	0.0031493	6.7304	0.0039932	593.314015041044	9.1858	0.23059	9.1858	9.106	9.3366	0	546	55	0.959108205975751	0.0363964682875382	0.959108205975751	388.628567952993	0	14.7477701275034						685	27	4	NaN	NaN	NaN	0.00023757	1	8999	100.84	67.44	1	236410			9249	1583	7819	8023	9249	9249		
IFANTPDSGCVLGMR	15	Unmodified	_IFANTPDSGCVLGMR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.39235	1636.77015	1.5394	0.0012614	1.0529	0.00086272	2.5923	0.0021241	819.393794528197	11.58	0.24836	11.58	11.509	11.758	0	381	88	1.06991323971056	0.058150869236149	1.06991323971056	432.144987664074	0	23.4875181799871						1060	29	5	NaN	NaN	NaN	4.9757E-12	1	22683	136.06	126.32	1	367550			9250	578	7820	8024	9250	9250		
IFAPNHVVAK	10	Unmodified	_IFAPNHVVAK_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	365.881831	1094.62366	-0.11071	-4.0505E-05	-1.1903	-0.00043551	-1.301	-0.00047601	365.881388074676	4.8223	0.15073	4.8223	4.7691	4.9199	0	882	28	0.730840773481911	0.0184849145635965	0.730840773481911	444.617714919108	0	11.2455691745073						309	18	4	NaN	NaN	NaN	0.06351	1	6580	21.275	15.527	1	128800			9251	1528	7821	8025	9251	9251		
IFAPNHVVAK	10	Unmodified	_IFAPNHVVAK_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.319109	1094.62366	1.3613	0.00074644	1.4247	0.0007812	2.786	0.0015276	548.31978461943	4.8401	0.21281	4.8401	4.8046	5.0174	0	615	28	0.912521036363781	0.0182626235094615	0.912521036363781	370.101264702131	0	7.40697451158383						232	25	2	NaN	NaN	NaN	0.0082692	1	6581	60.589	46.054	1	69043			9252	1528	7821	8025	9252	9252		
IFAPNHVVAK	10	Unmodified	_IFAPNHVVAK_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.319109	1094.62366	1.95	0.0010692	1.527	0.0008373	3.477	0.0019065	548.320240077651	4.8135	0.12414	4.8135	4.7691	4.8933	0	600	46	0.922661313351899	0.0304166222504839	0.922661313351899	374.213968687086	0	12.3364063949524						346	15	4	NaN	NaN	NaN	1.5416E-05	1	6582	117.39	68.33	1	326550			9253	1528	7821	8025	9253	9253		
IFASIAPSIYGHEDIK	16	Unmodified	_IFASIAPSIYGHEDIK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.964519	1759.91449	1.6846	0.0014841	-0.59755	-0.00052642	1.0871	0.00095766	881.465418633381	11.811	0.12416	11.811	11.766	11.89	0	162	52	1.21569043230068	0.0337850812136038	1.21569043230068	490.736883795576	0	13.6379994717634						384	15	4	NaN	NaN	NaN	1.8659E-06	1	26145	95.656	84.174	1	97356			9254	1144	7822	8026	9254	9254		
IFAVAATYPYQVVR	14	Unmodified	_IFAVAATYPYQVVR_			0	0	0	Q9H2D1	Q9H2D1	Q9H2D1	SLC25A32	Mitochondrial folate transporter/carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.440483	1596.86641	2.088	0.0016692	1.8606	0.0014874	3.9486	0.0031567	799.442096296943	13.868	0.079815	13.868	13.832	13.912	0	291	31	1.12999890578964	0.0199899698231232	1.12999890578964	456.509691120357	0	8.0757732619947						148	10	3	NaN	NaN	NaN	0.069682	1	21485	27.589	26.708	1	27009			9255	2865	7823	8027	9255	9255		
IFCCHGGLSPDLQSMEQIR	19	Unmodified	_IFCCHGGLSPDLQSMEQIR_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.015102	2247.02348	0.59414	0.00044561	-0.24716	-0.00018537	0.34698	0.00026024	750.349623303445	12.414	0.15958	12.414	12.361	12.52	0	603	52	0.920633820089869	0.0344721745325131	0.920633820089869	556.500274870075	0	20.8375731850042						853	19	6	NaN	NaN	NaN	1.3309E-45	1	35159	285.31	259.72	1	433570			9256	1366;992;1365	7824	8028	9256	9256		
IFCCHGGLSPDLQSMEQIR	19	Oxidation (M)	_IFCCHGGLSPDLQSM(Oxidation (M))EQIR_	IFCCHGGLSPDLQSM(1)EQIR	IFCCHGGLSPDLQSM(65)EQIR	0	1	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	755.346741	2263.01839	0.22442	0.00016952	1.2101	0.00091405	1.4345	0.0010836	755.68222908232	9.4342	0.070938	9.4342	9.3987	9.4696	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	556.476117527259	0	11.0311747598843						194	9	4	NaN	NaN	NaN	3.4936E-05	1	35302	65.12	62.879	1	42159			9257	1366;992;1365	7824	8029	9257	9257	357	
IFCLDGVK	8	Unmodified	_IFCLDGVK_			0	0	0	P40261	P40261	P40261	NNMT	Nicotinamide N-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.252046	950.489538	-0.37015	-0.00017628	-1.2751	-0.00060728	-1.6453	-0.00078356	476.250733896661	10.108	0.23055	10.108	10.01	10.241	0	741	37	0.827064408645228	0.024487471345556	0.827064408645228	336.073262442848	0	9.95035489141316						526	27	4	NaN	NaN	NaN	0.05405	1	3257	51.43	26.611	1	192860			9258	1017	7825	8030	9258	9258		
IFCVHGGLSPSIQTLDQIR	19	Unmodified	_IFCVHGGLSPSIQTLDQIR_			0	0	0	P60510	P60510	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.377246	2140.10991	0.53996	0.00038574	-1.5762	-0.001126	-1.0362	-0.00074027	714.710696902631	13.93	0.062065	13.93	13.895	13.957	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	545.629791228125	0	13.5041071389239						213	8	4	NaN	NaN	NaN	0.001607	1	33889	75.5	69.885	1	48882			9259	1306	7826	8031	9259	9259		
IFDEILVNAADNK	13	Unmodified	_IFDEILVNAADNK_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.382831	1460.75111	1.3614	0.00099574	0.37859	0.00027689	1.74	0.0012726	731.383039976358	13.691	0.25713	13.691	13.558	13.815	0	384	85	1.06790610341098	0.0562735591105332	1.06790610341098	431.770239999234	0	22.7522326589937						1101	30	4	NaN	NaN	NaN	0.0038856	1	17301	59.731	25.538	1	414060			9260	652;1534	7827	8032	9260	9260		
IFDIDEAEEGVK	12	Unmodified	_IFDIDEAEEGVK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.83264	1363.65073	1.4537	0.00099261	5.0063	0.0034184	6.4599	0.004411	682.835085011202	11.491	0.2927	11.491	11.367	11.66	0	483	64	1.00151498427745	0.0423657519698583	1.00151498427745	405.197724496194	0	17.1405386481976						1064	34	5	NaN	NaN	NaN	3.1874E-05	1	14294	133.76	101.62	1	660220			9261	776	7828	8033	9261	9261		
IFDLQDWTQEDERDK	15	Unmodified	_IFDLQDWTQEDERDK_			0	0	1	Q9P2R7	Q9P2R7	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.634038	1936.88029	0.099421	6.4289E-05	0.24206	0.00015653	0.34148	0.00022081	646.968200795633	13.194	0.10644	13.194	13.15	13.256	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	536.165851877019	0	12.2975423474692						341	13	4	NaN	NaN	NaN	4.6049E-06	1	30449	83.214	62.879	1	112740			9262	3164	7829	8034	9262	9262		
IFDLQDWTQEDERDK	15	Unmodified	_IFDLQDWTQEDERDK_			0	0	1	Q9P2R7	Q9P2R7	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.447419	1936.88029	1.7898	0.0017351	2.8378	0.0027511	4.6276	0.0044862	969.951711851621	13.203	0.088702	13.203	13.159	13.247	0	222	34	1.17589687683038	0.0219150210446621	1.17589687683038	474.334293731073	0	8.84010004120529						219	11	3	NaN	NaN	NaN	0.046413	1	30451	44.045	36.08	1	47716			9263	3164	7829	8034	9263	9263		
IFDSEEILAGYK	12	Unmodified	_IFDSEEILAGYK_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.853375	1383.6922	1.3798	0.00095597	2.2634	0.0015682	3.6431	0.0025242	692.854195405739	13.735	0.2039	13.735	13.646	13.85	0	432	52	1.035754240522	0.0342061750020484	1.035754240522	418.989502601022	0	13.837286577527						697	24	4	NaN	NaN	NaN	0.0034466	1	14946	70.389	47.491	1	291180			9264	229	7830	8035	9264	9264		
IFDSPEELPK	10	Unmodified	_IFDSPEELPK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.803154	1173.59175	0.20002	0.00011757	0.29101	0.00017106	0.49103	0.00028863	587.803500105702	9.5317	0.133	9.5317	9.4696	9.6026	0	651	52	0.888155670855968	0.034524788934056	0.888155670855968	359.917660357985	0	13.9908820776013						268	16	3	NaN	NaN	NaN	0.0032887	1	8696	52.591	30.587	1	61603			9265	978	7831	8036	9265	9265		
IFEDIPTLEDLAETLK	16	Unmodified	_IFEDIPTLEDLAETLK_			0	0	0	Q16666	Q16666	Q16666	IFI16	Gamma-interferon-inducible protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.987857	1845.96116	1.1782	0.0010886	-0.26241	-0.00024247	0.91577	0.00084616	924.489006208959	20.04	0.053206	20.04	20.013	20.066	0	246	55	1.1599488233373	0.0359176733564297	1.1599488233373	468.065068273522	0	14.4935775558045						161	7	3	NaN	NaN	NaN	0.072625	1	28389	15.616	12.531	1	41201			9266	1899	7832	8037	9266	9266		
IFEMGPVFTL	10	Oxidation (M)	_IFEM(Oxidation (M))GPVFTL_	IFEM(1)GPVFTL	IFEM(110)GPVFTL	0	1	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.299193	1168.58383	-0.20028	-0.00011722	-1.1457	-0.00067057	-1.346	-0.00078779	585.298601067745	18.408	0.13305	18.408	18.364	18.497	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	360.759074928478	0	9.05714100045037						302	16	4	NaN	NaN	NaN	0.00019182	1	8568	109.36	94.594	1	87623			9267	477	7833	8038	9267	9267	71	
IFEPILGEGR	10	Unmodified	_IFEPILGEGR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.813856	1129.61316	-0.46452	-0.00026283	1.3963	0.00079005	0.93178	0.00052722	565.814676710949	11.944	0.17736	11.944	11.89	12.068	0	621	40	0.908462957275599	0.0263756909350701	0.908462957275599	368.313472499388	0	10.6933609566199						404	21	4	NaN	NaN	NaN	0.010257	1	7525	50.834	33.439	1	91127			9268	878	7834	8039	9268	9268		
IFEPPPPK	8	Unmodified	_IFEPPPPK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.763104	923.511654	-0.96189	-0.00044513	-0.6411	-0.00029668	-1.603	-0.00074181	462.762750005794	5.6292	0.35471	5.6292	5.4785	5.8332	0	780	31	0.800512323802183	0.0204460030373547	0.800512323802183	325.419376479717	0	8.31158417189152						392	41	2	NaN	NaN	NaN	0.012404	1	2772	51.43	22.12	1	108960			9269	181	7835	8040	9269	9269		
IFEYETQR	8	Unmodified	_IFEYETQR_			0	0	0	P50402	P50402	P50402	EMD	Emerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.266739	1084.51892	1.5715	0.00085373	1.4026	0.00076198	2.9741	0.0016157	543.267427690487	6.1347	0.21285	6.1347	6.0904	6.3033	0	615	40	0.912521036363781	0.0263793478580419	0.912521036363781	370.144128998542	0	10.7002034444847						434	25	4	NaN	NaN	NaN	4.21E-05	1	6317	143.56	129.91	1	170450			9270	1162	7836	8041	9270	9270		
IFEYLDR	7	Unmodified	_IFEYLDR_			0	0	0	Q03518	Q03518	Q03518	TAP1	Antigen peptide transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.247818	954.481082	-0.70531	-0.00033731	-1.4234	-0.00068076	-2.1288	-0.0010181	478.247528138968	10.037	0.20395	10.037	9.975	10.179	0	741	31	0.827064408645228	0.020406225036543	0.827064408645228	336.05322831406	0	8.29146766509587						240	24	2	NaN	NaN	NaN	0.031334	1	3324	56.091	35.432	1	56321			9271	1538	7837	8042	9271	9271		
IFFAGDTIPK	10	Unmodified	_IFFAGDTIPK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.8055	1107.59645	-0.21977	-0.00012193	-1.8831	-0.0010447	-2.1028	-0.0011667	554.804482453219	11.873	0.19509	11.873	11.802	11.997	0	636	61	0.898312834727904	0.0405920646036421	0.898312834727904	364.285648016548	0	16.460976607271						515	23	3	NaN	NaN	NaN	0.047284	1	6932	24.121	15.358	1	224000			9272	326	7838	8043	9272	9272		
IFGGLDMLAEK	11	Unmodified	_IFGGLDMLAEK_			0	0	0	Q92688	Q92688	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.315374	1192.6162	0.31193	0.00018632	0.46936	0.00028036	0.7813	0.00046668	597.315761354748	14.737	0.28378	14.737	14.675	14.959	0	591	58	0.928742107665821	0.0385063777351686	0.928742107665821	376.295218995962	0	15.6014955314271						861	33	4	NaN	NaN	NaN	0.00018388	1	9236	76.572	59.177	1	1208500			9273	2428	7839	8044	9273	9273		
IFGLLMGTLQK	11	Unmodified	_IFGLLMGTLQK_			0	0	0	Q9H307	Q9H307	Q9H307	PNN	Pinin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.857209	1219.69987	0.16462	0.00010056	-2.427	-0.0014826	-2.2624	-0.001382	610.855974841463	16.51	0.19507	16.51	16.457	16.652	0	561	67	0.948993180460448	0.0444968965895804	0.948993180460448	384.402626507197	0	18.024074643144						460	23	4	NaN	NaN	NaN	0.00012588	1	10017	88.181	72.682	1	134650			9274	2877	7840	8045	9274	9274		
IFGTDSQYNAYNEK	14	Unmodified	_IFGTDSQYNAYNEK_			0	0	0	Q15800	Q15800	Q15800	MSMO1	Methylsterol monooxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.375734	1648.73692	2.4774	0.0020448	0.41714	0.0003443	2.8946	0.0023891	825.376117318723	7.9083	0.14185	7.9083	7.8552	7.997	0	366	34	1.07994477139643	0.0220632885593353	1.07994477139643	436.170218375397	0	8.91096437881833						352	17	4	NaN	NaN	NaN	8.1732E-08	1	22986	117.21	108.73	1	82254			9275	1869	7841	8046	9275	9275		
IFGVTTLDIVR	11	Unmodified	_IFGVTTLDIVR_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.363713	1232.71287	0.98909	0.00061063	-0.21405	-0.00013215	0.77503	0.00047848	617.363682539852	15.721	0.3015	15.721	15.659	15.961	0	552	97	0.955063035883597	0.064686980375106	0.955063035883597	386.815595471827	0	26.1992474768134						1414	35	5	NaN	NaN	NaN	1.857E-11	1	10416	174.92	123.49	1	2048000			9276	1023	7842	8047	9276	9276		
IFHELTQTDK	10	Unmodified	_IFHELTQTDK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.215427	1230.62445	-0.39705	-0.00016327	-0.91793	-0.00037747	-1.315	-0.00054074	411.214970490578	4.778	0.21279	4.778	4.7425	4.9553	0	900	31	0.718511479433384	0.0205574285037972	0.718511479433384	436.516972098678	0	12.4892457552512						390	25	4	NaN	NaN	NaN	0.00047832	1	10324	115.86	73.786	1	130190			9277	656	7843	8048	9277	9277		
IFHELTQTDK	10	Unmodified	_IFHELTQTDK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.319502	1230.62445	2.1046	0.0012971	-0.74918	-0.00046173	1.3554	0.00083534	616.319036928977	4.7869	0.16847	4.7869	4.7337	4.9021	0	570	28	0.942920803299286	0.0182171330553085	0.942920803299286	381.904979070286	0	7.37836496327679						184	20	2	NaN	NaN	NaN	0.0020188	1	10325	76.85	42.069	1	101340			9278	656	7843	8048	9278	9278		
IFHTVTTTDDPVIR	14	Unmodified	_IFHTVTTTDDPVIR_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.954383	1613.84132	-0.20031	-0.00010796	-0.73012	-0.0003935	-0.93043	-0.00050146	538.954431513466	8.077	0.20404	8.077	8.0237	8.2277	0	762	67	0.812773098473386	0.0449124468991428	0.812773098473386	492.482700545085	0	27.2137490506544						631	24	5	NaN	NaN	NaN	5.9385E-08	1	22012	175.07	164.82	1	403160			9279	168	7844	8049	9279	9279		
IFHTVTTTDDPVIR	14	Unmodified	_IFHTVTTTDDPVIR_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.927937	1613.84132	3.0533	0.0024668	-2.366	-0.0019115	0.68729	0.00055528	807.926163243159	8.077	0.11538	8.077	8.0148	8.1302	0	351	76	1.08996939197032	0.0501162317306705	1.08996939197032	440.298305112644	0	20.2446894859664						523	14	4	NaN	NaN	NaN	9.2437E-12	1	22013	117.45	101.16	1	151170			9280	168	7844	8049	9280	9280		
IFIGTFK	7	Unmodified	_IFIGTFK_			0	0	0	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	413.247089	824.479626	-1.7382	-0.00071832	-3.4428	-0.0014227	-5.1811	-0.0021411	413.246395442577	10.427	0.18622	10.427	10.312	10.498	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	307.648484235393	0	6.6804699931422						184	22	3	NaN	NaN	NaN	0.036857	1	1244	49.058	18	1	37028			9281	701	7845	8050	9281	9281		
IFINLPR	7	Unmodified	_IFINLPR_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.771263	871.527973	-4.1601	-0.001817	1.2751	0.00055694	-2.885	-0.0012601	436.771945132522	11.917	0.097562	11.917	11.864	11.961	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	322.375702937464	0	6.65785609302947						136	12	2	NaN	NaN	NaN	0.0033538	1	1889	92.785	48.052	1	35542			9282	198	7846	8051	9282	9282		
IFLCQGK	7	Unmodified	_IFLCQGK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.233656	864.452759	-1.3341	-0.00057797	-1.5405	-0.00066739	-2.8746	-0.0012454	433.232515072069	5.9929	0.12421	5.9929	5.9307	6.055	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	314.087439086891	0	6.66797938901311						172	15	3	NaN	NaN	NaN	0.051547	1	1777	32.971	21.322	1	31246			9283	1061	7847	8052	9283	9283		
IFLFDTQHFISK	12	Unmodified	_IFLFDTQHFISK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.269643	1494.7871	-2.04	-0.0010185	0.57334	0.00028625	-1.4666	-0.00073224	499.269771762625	14.817	0.17734	14.817	14.772	14.95	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	502.718517254171	0	12.3713672360706						368	21	4	NaN	NaN	NaN	3.0112E-05	1	18390	79.311	58.222	1	164340			9284	2900	7848	8053	9284	9284		
IFLFDTQHFISK	12	Unmodified	_IFLFDTQHFISK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.400827	1494.7871	0.25552	0.00019123	2.2173	0.0016594	2.4728	0.0018507	748.401889327482	14.826	0.15075	14.826	14.781	14.932	0	375	46	1.07392668217569	0.0300904538229143	1.07392668217569	434.111665418222	0	12.16341603115						342	18	4	NaN	NaN	NaN	3.1347E-07	1	18391	119.94	92.989	1	88693			9285	2900	7848	8053	9285	9285		
IFLLGLADNEAAIVQAESEETK	22	Unmodified	_IFLLGLADNEAAIVQAESEETK_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.744317	2360.21112	0.73605	0.00057982	1.7127	0.0013492	2.4488	0.001929	788.07994595279	18.922	0.097534	18.922	18.878	18.976	0	390	31	1.06389100039157	0.0200782861239661	1.06389100039157	642.906264275691	0	12.1332504178215						165	12	3	NaN	NaN	NaN	0.0062385	1	36127	58.794	56.946	1	35516			9286	3212	7849	8054	9286	9286		
IFLLTNNNLLLADQK	15	Unmodified	_IFLLTNNNLLLADQK_			0	0	0	O43795	O43795	O43795	MYO1B	Unconventional myosin-Ib	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.495987	1728.97742	0.8655	0.00074909	-0.60383	-0.00052261	0.26167	0.00022648	865.49406844276	17.06	0.11526	17.06	17.025	17.14	0	264	40	1.14797626962532	0.0259565934896919	1.14797626962532	463.467561519301	0	10.4793447463348						219	14	3	NaN	NaN	NaN	4.5924E-08	1	25308	110.58	85.893	1	46675			9287	230	7850	8055	9287	9287		
IFNAEVLFR	9	Unmodified	_IFNAEVLFR_			0	0	0	P55039	P55039	P55039	DRG2	Developmentally-regulated GTP-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.811116	1107.60768	-0.87245	-0.00048404	-3.2004	-0.0017756	-4.0728	-0.0022596	554.810993843718	14.852	0.1241	14.852	14.79	14.914	0	636	61	0.898312834727904	0.0406314919557856	0.898312834727904	364.285608518614	0	16.4769634807855						413	15	5	NaN	NaN	NaN	2.4074E-05	1	6933	121.31	101.83	1	98203			9288	1263	7851	8056	9288	9288		
IFNDNSLSMEAFQHR	15	Unmodified	_IFNDNSLSMEAFQHR_			0	0	0	P42226	P42226	P42226	STAT6	Signal transducer and activator of transcription 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.617666	1807.83117	-0.39973	-0.00024128	-0.33881	-0.00020451	-0.73854	-0.00044579	603.61765270808	11.66	0.088665	11.66	11.624	11.713	0	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	542.587497568662	0	9.83619712637824						208	11	4	NaN	NaN	NaN	0.00010605	1	27413	44.82	35.077	1	54728			9289	1045	7852	8057	9289	9289		
IFNITDNAAIK	11	Unmodified	_IFNITDNAAIK_			0	0	0	P09001	P09001	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.337695	1218.66084	1.1653	0.0007112	-0.90184	-0.00055043	0.26342	0.00016078	610.336966772308	11.057	0.10641	11.057	11.021	11.128	0	564	31	0.946969335010767	0.0202370558589571	0.946969335010767	383.586493115811	0	8.19737345332084						214	13	3	NaN	NaN	NaN	0.0076412	1	9990	63.397	38.547	1	85597			9290	594	7853	8058	9290	9290		
IFNSDELIHFR	11	Unmodified	_IFNSDELIHFR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.241976	1389.7041	-1.9336	-0.00089766	0.2883	0.00013384	-1.6453	-0.00076382	464.2419828646	12.493	0.1064	12.493	12.423	12.529	0	771	28	0.806643990516186	0.0183898836962016	0.806643990516186	489.438248484165	0	11.1582216838146						188	13	3	NaN	NaN	NaN	0.062082	1	15144	22.044	14.893	1	44898			9291	3048	7854	8059	9291	9291		
IFPGDTILETGEVIPPMK	18	Unmodified	_IFPGDTILETGEVIPPMK_			0	0	0	O95139	O95139	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.021177	1956.0278	1.4737	0.0014428	-1.408	-0.0013785	0.065728	6.4349E-05	979.019144010731	17.583	0.31923	17.583	17.468	17.787	0	198	97	1.1918274123006	0.063695966670233	1.1918274123006	480.726901289453	0	25.6919452984476						906	37	2	NaN	NaN	NaN	0.011588	1	30828	36.46	26.717	1	250990			9292	405	7855	8060	9292	9292		
IFQGNVHNFEK	11	Unmodified	_IFQGNVHNFEK_			0	0	0	Q96DI7	Q96DI7	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.894688	1331.66223	-0.75216	-0.00033463	-1.7811	-0.0007924	-2.5333	-0.001127	445.227291872934	5.6292	0.15967	5.6292	5.5849	5.7445	0	807	28	0.782101955086014	0.0184231892400387	0.782101955086014	474.750574543402	0	11.1832218545832						241	19	3	NaN	NaN	NaN	0.042252	1	13346	21.088	4.6308	1	72584			9293	2506	7856	8061	9293	9293		
IFQGNVHNFEK	11	Unmodified	_IFQGNVHNFEK_			0	0	0	Q96DI7	Q96DI7	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.838394	1331.66223	2.4318	0.0016216	3.0333	0.0020227	5.4651	0.0036444	666.838231569712	5.6292	0.19515	5.6292	5.5849	5.78	0	462	49	1.01562323939346	0.0322407656624188	1.01562323939346	411.004756698793	0	13.047267463847						497	23	5	NaN	NaN	NaN	0.0002101	1	13349	117.3	85.159	1	138580			9294	2506	7856	8061	9294	9294		
IFQNAPTDPTQDFSTQVAK	19	Unmodified	_IFQNAPTDPTQDFSTQVAK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.51838	2107.0222	2.5273	0.002665	-0.97681	-0.0010301	1.5504	0.001635	1055.01846778019	11.172	0.14187	11.172	11.092	11.234	0	192	88	1.1958073123591	0.0576650550215505	1.1958073123591	482.088603493881	0	23.2476131885276						638	17	3	NaN	NaN	NaN	2.7313E-07	1	33420	110.14	100.62	1	143190			9295	1072	7857	8062	9295	9295		
IFQNLDGALDEVVLK	15	Unmodified	_IFQNLDGALDEVVLK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.45907	1672.90359	1.5389	0.0012887	0.079219	6.6343E-05	1.6181	0.0013551	837.459268324709	17.229	0.18623	17.229	17.158	17.344	0	318	55	1.11199926528787	0.0360215991015307	1.11199926528787	449.062381941588	0	14.5467228251187						748	22	5	NaN	NaN	NaN	1.2045E-11	1	23713	165.72	137.08	1	414910			9296	1531	7858	8063	9296	9296		
IFQNLDGALDEVVLK	15	Unmodified	_IFQNLDGALDEVVLK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.45907	1672.90359	1.5691	0.0013141	1.0123	0.00084773	2.5814	0.0021618	837.4601069605	15.89	0.17733	15.89	15.845	16.023	0	318	43	1.11199926528787	0.0280167950523351	1.11199926528787	449.062378495345	0	11.3141159502127						544	21	5	NaN	NaN	NaN	1.2201E-11	1	23714	137.39	112.7	1	237210			9297	1531	7858	8063	9297	9297		
IFQNMSPLLELSSENLR	17	Unmodified	_IFQNMSPLLELSSENLR_			0	0	0	Q9UI26	Q9UI26	Q9UI26	IPO11	Importin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.016957	1990.01936	1.5721	0.0015659	-0.055429	-5.5209E-05	1.5167	0.0015107	996.51897182951	17.761	0.1596	17.761	17.681	17.841	0	186	49	1.1997861197946	0.0318260997868145	1.1997861197946	483.878821805772	0	12.8356007903752						384	19	4	NaN	NaN	NaN	0.00010883	1	31461	79.235	70.483	1	78446			9298	3233	7859	8064	9298	9298		
IFQVAQELSGEDMHQFHR	18	Unmodified	_IFQVAQELSGEDMHQFHR_			0	0	0	Q99598	Q99598	Q99598	TSNAX	Translin-associated protein X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	543.762732	2171.02182	-1.0516	-0.00057181	0.59547	0.0003238	-0.4561	-0.00024801	544.013790084098	11.412	0.088688	11.412	11.376	11.465	0	744	22	0.82502364452135	0.0142873361066338	0.82502364452135	665.082679052054	0	11.5175605419529						174	11	4	NaN	NaN	NaN	8.1031E-05	1	34322	66.619	66.619	1	36252			9299	2656	7860	8065	9299	9299		
IFRDGEEAGAYDGPR	15	Unmodified	_IFRDGEEAGAYDGPR_			0	0	1	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.593626	1651.75905	0.55813	0.00030786	0.66513	0.00036688	1.2233	0.00067474	551.594155053577	5.5937	0.11537	5.5937	5.5317	5.6471	0	699	25	0.85560534332665	0.0162955130299774	0.85560534332665	518.334821297104	0	9.87199519055991						234	14	3	NaN	NaN	NaN	0.0021635	1	23095	65.408	62.928	1	59253			9300	904	7861	8066	9300	9300		
IFREDYSITTK	11	Unmodified	_IFREDYSITTK_			0	0	1	Q9BUQ8	Q9BUQ8	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.241753	1371.70343	-1.517	-0.00069515	-0.95613	-0.00043814	-2.4731	-0.0011333	458.241537388884	6.658	0.062058	6.658	6.6402	6.7023	0	855	19	0.749315378969369	0.0123086780485644	0.749315378969369	454.712308710555	0	7.46936145943749						86	8	3	NaN	NaN	NaN	0.016857	1	14537	43.168	36.421	1	17297			9301	2749	7862	8067	9301	9301		
IFSFAHQTISALIK	14	Unmodified	_IFSFAHQTISALIK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.967964	1574.88206	-1.5221	-0.00080058	1.0553	0.00055507	-0.46676	-0.0002455	526.3035457752	14.808	0.20396	14.808	14.764	14.967	0	732	88	0.833184998970724	0.0590918090550957	0.833184998970724	504.956985863146	0	35.8129608988676						659	24	5	NaN	NaN	NaN	0.00020183	1	20835	83.214	53.459	1	254090			9302	2605	7863	8068	9302	9302		
IFSFAHQTISALIK	14	Unmodified	_IFSFAHQTISALIK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.448308	1574.88206	1.0293	0.00081154	2.0956	0.0016522	3.1248	0.0024638	788.450022400899	14.808	0.12416	14.808	14.764	14.888	0	267	34	1.14597988355104	0.021963270168132	1.14597988355104	463.021431627422	0	8.87403430237913						430	15	4	NaN	NaN	NaN	3.3515E-17	1	20837	135.21	111.4	1	196310			9303	2605	7863	8068	9303	9303		
IFSFLLNTLQENVNK	15	Unmodified	_IFSFLLNTLQENVNK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.485619	1778.95669	1.5198	0.0013534	-2.6661	-0.0023741	-1.1463	-0.0010207	890.984725086038	18.674	0.11528	18.674	18.63	18.745	0	288	37	1.13199748998575	0.0239813645434503	1.13199748998575	456.914387471495	0	9.67973037752864						305	14	4	NaN	NaN	NaN	7.4262E-12	1	26656	117.21	85.159	1	96884			9304	2947	7864	8069	9304	9304		
IFSFLLNTLQENVNK	15	Unmodified	_IFSFLLNTLQENVNK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.485619	1778.95669	1.0169	0.00090557	2.7721	0.0024685	3.7891	0.0033741	890.487820537732	18.656	0.035474	18.656	18.648	18.683	0	201	25	1.18983705239708	0.0159217872807365	1.18983705239708	480.26046868885	0	6.42659850473268						86	5	3	NaN	NaN	NaN	0.00020024	1	26657	81.799	73.424	1	15717			9305	2947	7864	8069	9305	9305		
IFSGSSHQDLSQK	13	Unmodified	_IFSGSSHQDLSQK_			0	0	0	P60891;P21108	P60891	P60891	PRPS1;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.354605	1432.69466	3.0261	0.0021708	-1.8415	-0.001321	1.1846	0.00084979	717.353318795836	3.5278	0.13301	3.5278	3.5012	3.6342	0	435	61	1.03374239103424	0.0402620166528518	1.03374239103424	418.034140658493	0	16.2815201143235						447	16	4	NaN	NaN	NaN	6.4366E-06	1	16470	112.7	101.34	1	109760			9306	1313	7865	8070	9306	9306		
IFSGSSHQDLSQK	13	Unmodified	_IFSGSSHQDLSQK_			0	0	0	P60891;P21108	P60891	P60891	PRPS1;PRPS1L1	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.572162	1432.69466	-0.51406	-0.00024602	1.7384	0.00083197	1.2244	0.00058595	478.572935682088	3.5278	0.13301	3.5278	3.5012	3.6342	-4.4409E-16	798	34	0.788241307691771	0.0225078287031693	0.788241307691771	478.131044329972	0	13.6527882241546						354	16	4	NaN	NaN	NaN	0.0026242	1	16471	55.754	43.158	1	99362			9307	1313	7865	8070	9307	9307		
IFSIIAEGEMHEAIK	15	Unmodified	_IFSIIAEGEMHEAIK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.439823	1686.86509	2.0377	0.0017207	-0.1654	-0.00013967	1.8723	0.0015811	844.941379797231	12.715	0.25718	12.715	12.671	12.928	0	225	55	1.17390432875292	0.0358584890217997	1.17390432875292	474.029477118546	0	14.4798689168497						466	30	4	NaN	NaN	NaN	3.9743E-08	1	24107	101.64	61.11	1	85336			9308	74	7866	8071	9308	9308		
IFSIVEQR	8	Unmodified	_IFSIVEQR_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.282192	990.549831	-0.32493	-0.00016126	-1.2617	-0.00062616	-1.5866	-0.00078742	496.282139019909	9.2125	0.16856	9.2125	9.177	9.3455	0	693	31	0.85967808974117	0.0203552522347787	0.85967808974117	349.124198208355	0	8.26647927939581						229	20	3	NaN	NaN	NaN	0.011762	1	4072	65.313	18.477	1	40458			9309	664	7867	8072	9309	9309		
IFSPHEPILEGSR	13	Unmodified	_IFSPHEPILEGSR_			0	0	0	P78563	P78563	P78563	ADARB1	Double-stranded RNA-specific editase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.596419	1480.76743	-1.8072	-0.00089382	-0.12694	-6.2786E-05	-1.9341	-0.0009566	494.596331214646	8.547	0.062071	8.547	8.5116	8.5736	0	801	28	0.78619514174348	0.0184154953193295	0.78619514174348	476.742017986795	0	11.166999049745						127	8	3	NaN	NaN	NaN	0.018468	1	17929	50.116	50.116	1	22076			9310	1466	7868	8073	9310	9310		
IFSPNVVNLTLVDLPGMTK	19	Unmodified	_IFSPNVVNLTLVDLPGMTK_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.56883	2057.1231	1.2689	0.0013064	-1.0757	-0.0011076	0.19312	0.00019883	1030.06981791257	19.552	0.07982	19.552	19.516	19.596	0	168	61	1.21171599086077	0.0397389804698309	1.21171599086077	488.579754712877	0	16.0232773000689						482	10	5	NaN	NaN	NaN	4.6244E-07	1	32664	81.409	71.83	1	122700			9311	79	7869	8074	9311	9311		
IFSPNVVNLTLVDLPGMTK	19	Oxidation (M)	_IFSPNVVNLTLVDLPGM(Oxidation (M))TK_	IFSPNVVNLTLVDLPGM(1)TK	IFSPNVVNLTLVDLPGM(58)TK	0	1	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.56628	2073.11801	0.91403	0.00094836	-1.0688	-0.0011089	-0.15475	-0.00016056	1038.06687578679	18.302	0.079789	18.302	18.266	18.346	0	159	34	1.21767724410157	0.0218519349767741	1.21767724410157	490.958012232639	0	8.81053055035903						232	10	4	NaN	NaN	NaN	0.00010958	1	32915	57.62	49.252	1	46933			9312	79	7869	8075	9312	9312	30	
IFTELCETFLEK	12	Unmodified	_IFTELCETFLEK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.381442	1528.74833	1.8629	0.0014258	-0.076926	-5.8878E-05	1.786	0.001367	765.381188895332	15.526	0.14202	15.526	15.446	15.588	0	381	34	1.06991323971056	0.0220754584082121	1.06991323971056	432.401178822058	0	8.92170868109878						360	17	5	NaN	NaN	NaN	0.00043973	1	19382	68.49	58.912	1	88118			9313	3437	7870	8076	9313	9313		
IFTPIVEHLGLQIR	14	Unmodified	_IFTPIVEHLGLQIR_			0	0	0	Q9NRX1	Q9NRX1	Q9NRX1	PNO1	RNA-binding protein PNO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.99088	1634.95081	-0.30239	-0.0001651	-1.5677	-0.00085594	-1.8701	-0.001021	545.990530695081	15.163	0.10641	15.163	15.118	15.225	0	666	31	0.877991458330206	0.0203326589411038	0.877991458330206	531.942006484674	0	12.3187934138552						244	13	4	NaN	NaN	NaN	0.019319	1	22638	24.689	23.95	1	83769			9314	3028	7871	8077	9314	9314		
IFTPLLHQIELEK	13	Unmodified	_IFTPLLHQIELEK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.639736	1579.89738	-0.54168	-0.00028581	-1.356	-0.00071546	-1.8976	-0.0010013	527.638992340155	13.983	0.19506	13.983	13.921	14.116	0	723	100	0.839303037468863	0.0673359420364573	0.839303037468863	508.650815171911	0	40.8082424084914						1570	23	5	NaN	NaN	NaN	0.00019228	1	20975	112.93	77.973	1	809550			9315	653	7872	8078	9315	9315		
IFTPLLHQIELEK	13	Unmodified	_IFTPLLHQIELEK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.955966	1579.89738	2.339	0.0018501	1.7953	0.00142	4.1343	0.00327	790.957793097444	13.974	0.266	13.974	13.903	14.169	0	318	64	1.11199926528787	0.0420396739560167	1.11199926528787	449.279480292867	0	16.9852296276034						1265	31	6	NaN	NaN	NaN	3.0367E-33	1	20976	244.44	219.62	1	1517200			9316	653	7872	8078	9316	9316		
IFTQLEEFR	9	Unmodified	_IFTQLEEFR_			0	0	0	O60306	O60306	O60306	AQR	Intron-binding protein aquarius	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.811313	1181.60807	0.69634	0.0004121	3.3431	0.0019785	4.0394	0.0023906	591.812688409796	12.307	0.14189	12.307	12.236	12.378	0	573	55	0.940896116921038	0.0364670917031453	0.940896116921038	381.260219221259	0	14.7768187444541						305	17	3	NaN	NaN	NaN	4.8591E-05	1	8924	125.5	57.997	1	66703			9317	254	7873	8079	9317	9317		
IFTSIGEDYDER	12	Unmodified	_IFTSIGEDYDER_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.833171	1443.65179	2.14	0.0015468	1.8486	0.0013362	3.9886	0.0028831	722.834757731331	9.5938	0.32809	9.5938	9.514	9.842	0	447	73	1.02569221487577	0.0483277765845833	1.02569221487577	414.7486179357	0	19.5418062608468						1303	38	5	NaN	NaN	NaN	1.8595E-07	1	16767	135.28	126.31	1	1225000			9318	960	7874	8080	9318	9318		
IFTTGDVNK	9	Unmodified	_IFTTGDVNK_			0	0	0	Q6NUK1	Q6NUK1	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.763832	993.513111	0.67801	0.00033749	-2.6183	-0.0013033	-1.9403	-0.0009658	497.762535487354	4.9553	0.11527	4.9553	4.9199	5.0351	0	705	34	0.851531465363931	0.0224172293536435	0.851531465363931	345.801648448449	0	9.10349784998709						190	14	3	NaN	NaN	NaN	0.011783	1	4135	49.96	20.65	1	81372			9319	2045	7875	8081	9319	9319		
IFVEFTSVFDCQK	13	Unmodified	_IFVEFTSVFDCQK_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.392341	1618.77013	1.0458	0.00084754	1.2301	0.00099685	2.2759	0.0018444	810.393281338867	16.785	0.1507	16.785	16.732	16.883	0	369	43	1.07793901817685	0.0280786163643747	1.07793901817685	435.427282414244	0	11.3421959974789						538	18	5	NaN	NaN	NaN	1.5351E-05	1	22146	130.79	118.83	1	181480			9320	850	7876	8082	9320	9320		
IFVFEPPPGVK	11	Unmodified	_IFVFEPPPGVK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.350074	1228.6856	0.90519	0.00055701	-0.31078	-0.00019124	0.59441	0.00036577	615.348415168724	13.682	0.25715	13.682	13.513	13.77	0	588	106	0.93076847747433	0.0708346946250306	0.93076847747433	376.989599649337	0	28.6902100943892						1236	30	5	NaN	NaN	NaN	0.027113	1	10277	48.157	28.902	1	302540			9321	1737	7877	8083	9321	9321		
IFVGGIPHNCGETELR	16	Unmodified	_IFVGGIPHNCGETELR_			0	0	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.301677	1797.8832	0.15504	9.3069E-05	-0.74822	-0.00044916	-0.59318	-0.00035609	600.301468799145	9.0262	0.1064	9.0262	8.9819	9.0883	0	687	82	0.863749705078866	0.0549248965738224	0.863749705078866	522.915253451905	0	33.2516075476953						784	13	5	NaN	NaN	NaN	6.8939E-07	1	27160	79.795	73.59	1	342820			9322	2517	7878	8084	9322	9322		
IFVGGLSPDTPEEK	14	Unmodified	_IFVGGLSPDTPEEK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.882664	1487.75077	2.0515	0.0015281	2.8773	0.0021433	4.9288	0.0036714	745.387194395122	10.277	0.37243	10.277	10.179	10.551	0	405	412	1.05384839605172	0.273398153965732	1.05384839605172	426.013931006157	0	110.520092583651						4404	43	6	NaN	NaN	NaN	2.7727E-24	1	18174	232.46	199.91	1	3157800			9323	1717	7879	8085	9323	9323		
IFVGNVSAACTSQELR	16	Unmodified	_IFVGNVSAACTSQELR_			0	0	0	Q96PK6	Q96PK6	Q96PK6	RBM14	RNA-binding protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.440886	1750.86722	2.586	0.0022665	-2.9491	-0.0025847	-0.36308	-0.00031822	876.935859490693	10.206	0.15073	10.206	10.143	10.294	0	306	79	1.12000185836644	0.0520527185893278	1.12000185836644	452.128614096253	0	21.0129325589342						681	18	5	NaN	NaN	NaN	2.6964E-18	1	25918	153.52	117	1	244190			9324	2596	7880	8086	9324	9324		
IFVNDDR	7	Unmodified	_IFVNDDR_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.721967	877.429381	-1.915	-0.00084207	1.1967	0.00052624	-0.71826	-0.00031584	439.722367562476	4.5918	0.24825	4.5918	4.5386	4.7869	0	789	37	0.794378096728713	0.0245420354301715	0.794378096728713	323.174180089463	0	9.98435406330304						467	29	3	NaN	NaN	NaN	0.0092387	1	1967	56.091	40.592	1	121470			9325	1606	7881	8087	9325	9325		
IFVNNELNELYTGLK	15	Unmodified	_IFVNNELNELYTGLK_			0	0	0	A6NJ78	A6NJ78	A6NJ78	METTL15	Probable methyltransferase-like protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.969802	1765.92505	1.2641	0.0011174	-1.6016	-0.0014158	-0.33751	-0.00029835	884.470547425712	16.36	0.11528	16.36	16.315	16.431	0	279	31	1.13799159301878	0.0199789712717875	1.13799159301878	459.36003149318	0	8.06468248879071						205	14	3	NaN	NaN	NaN	0.00019122	1	26299	87.573	79.608	1	41869			9326	18	7882	8088	9326	9326		
IFYPEIEEVQALDDTER	17	Unmodified	_IFYPEIEEVQALDDTER_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.99948	2065.98442	1.7397	0.0017989	0.48146	0.00049783	2.2212	0.0022967	1034.50147615849	15.854	0.38131	15.854	15.739	16.12	-1.7764E-15	183	103	1.20177511391933	0.0676212511867538	1.20177511391933	484.557523315122	0	27.2649896132917						2129	44	5	NaN	NaN	NaN	4.3365E-14	1	32810	123.99	113.51	1	1131700			9327	946	7883	8089	9327	9327		
IFYPETTDIYDR	12	Unmodified	_IFYPETTDIYDR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.867014	1531.71947	1.8895	0.001449	0.91097	0.00069859	2.8005	0.0021476	766.867645589603	11.553	0.26608	11.553	11.474	11.74	0	387	55	1.06589869032374	0.036130958221537	1.06589869032374	430.771212185976	0	14.6019286934344						937	31	5	NaN	NaN	NaN	0.00041012	1	19482	60.547	49.192	1	561730			9328	1095	7884	8090	9328	9328		
IFYPETTDIYDRK	13	Unmodified	_IFYPETTDIYDRK_			0	0	1	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.278756	1659.81444	-0.098764	-5.4743E-05	0.46174	0.00025593	0.36298	0.00020119	554.278642507276	9.5228	0.1596	9.5228	9.4696	9.6292	0	690	97	0.86171403876517	0.0651459254929563	0.86171403876517	522.01448495694	0	39.464503551527						811	19	5	NaN	NaN	NaN	0.0089251	1	23334	70.389	51.578	1	298550			9329	1095	7885	8091	9329	9329		
IFYPETTDIYDRK	13	Unmodified	_IFYPETTDIYDRK_			0	0	1	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.914495	1659.81444	2.4769	0.0020581	-2.0445	-0.0016988	0.43245	0.00035933	830.913243429616	9.5317	0.1064	9.5317	9.4785	9.5849	0	312	61	1.11600111266355	0.0400350261714058	1.11600111266355	450.707664818317	0	16.1685261348788						440	13	4	NaN	NaN	NaN	0.00088067	1	23335	57.293	48.316	1	103210			9330	1095	7885	8091	9330	9330		
IFYVNYLSELSEHVK	15	Unmodified	_IFYVNYLSELSEHVK_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.320843	1839.9407	0.035548	2.1838E-05	0.27237	0.00016732	0.30792	0.00018916	614.319884852164	16.218	0.14184	16.218	16.165	16.307	0	609	34	0.916577990479294	0.0223086119453004	0.916577990479294	554.800577149209	0	13.5033034954051						382	17	5	NaN	NaN	NaN	0.037479	1	28237	31.04	31.04	1	103080			9331	1573	7886	8092	9331	9331		
IGADFLAR	8	Unmodified	_IGADFLAR_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.742702	861.470852	-2.786	-0.0012028	0.78662	0.00033962	-1.9994	-0.00086323	431.743256708779	9.3721	0.15075	9.3721	9.3278	9.4785	0	798	28	0.788241307691771	0.0184129317501174	0.788241307691771	320.769037552008	0	7.49300796388292						229	18	2	NaN	NaN	NaN	0.010865	1	1741	51.43	26.579	1	66920			9332	736	7887	8093	9332	9332		
IGAEVYHHLK	10	Unmodified	_IGAEVYHHLK_			0	0	0	P13929	P13929	P13929	ENO3	Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.548741	1165.62439	-0.053828	-2.0969E-05	-0.60857	-0.00023707	-0.6624	-0.00025804	389.548706836388	3.7672	0.053219	3.7672	3.7494	3.8026	4.4409E-16	879	34	0.732894652678068	0.0225895234700624	0.732894652678068	445.530026049062	0	13.7322750865719						114	7	2	NaN	NaN	NaN	0.047275	1	8490	20.234	14.925	1	25853			9333	688	7888	8094	9333	9333		
IGAEVYHNLK	10	Unmodified	_IGAEVYHNLK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	381.876746	1142.60841	-0.043438	-1.6588E-05	-0.22524	-8.6012E-05	-0.26867	-0.0001026	381.87670365945	4.9819	0.60295	4.9819	4.9287	5.5317	0	837	85	0.761618911097395	0.0574085339707023	0.761618911097395	463.100493650388	0	34.9071169770069						1635	69	5	NaN	NaN	NaN	0.010092	1	7859	56.014	37.678	1	1652100			9334	544	7889	8095	9334	9334		
IGAEVYHNLK	10	Unmodified	_IGAEVYHNLK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.31148	1142.60841	2.9064	0.0016634	-0.6003	-0.00034356	2.3061	0.0013198	572.31071881332	4.9908	0.55861	4.9908	4.9376	5.4962	0	576	79	0.938871150116794	0.0526601189879869	0.938871150116794	380.589517942382	0	21.3467942836813						1627	64	5	NaN	NaN	NaN	0.00090329	1	7860	100.84	46.4	1	3618000			9335	544	7889	8095	9335	9335		
IGALEGYR	8	Unmodified	_IGALEGYR_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.74016	877.465767	-1.2291	-0.0005405	0.58879	0.00025891	-0.64035	-0.00028159	439.740329939686	5.9396	0.21289	5.9396	5.8775	6.0904	0	750	34	0.820941264895493	0.0224577750816375	0.820941264895493	333.980574675934	0	9.13641565899724						390	25	3	NaN	NaN	NaN	0.026858	1	1975	63.301	25.693	1	133400			9336	229	7890	8096	9336	9336		
IGALQLQLSQLHEQCSSLEK	20	Unmodified	_IGALQLQLSQLHEQCSSLEK_			0	0	0	Q96T51	Q96T51	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.398487	2281.17363	0.69836	0.00053173	0.14042	0.00010691	0.83878	0.00063864	761.732949097107	12.529	0.079808	12.529	12.493	12.573	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	593.139089331597	0	10.9849184943893						201	10	4	NaN	NaN	NaN	4.5954E-10	1	35471	100.56	85.609	1	47048			9337	2629	7891	8097	9337	9337		
IGAMLAYTPLDEK	13	Unmodified	_IGAMLAYTPLDEK_			0	0	0	Q15014;Q9UBU8	Q15014;Q9UBU8	Q9UBU8	MORF4L2;MORF4L1	Mortality factor 4-like protein 2;Mortality factor 4-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.370878	1420.7272	2.721	0.0019356	0.088406	6.289E-05	2.8094	0.0019985	711.371292617078	12.866	0.14188	12.866	12.813	12.955	0	378	52	1.07192009927972	0.0341260341638749	1.07192009927972	433.507694728101	0	13.8013070288865						462	17	4	NaN	NaN	NaN	0.00023838	1	16115	68.49	52.611	1	130830			9338	3190;1791	7892	8098	9338	9338		
IGASLADVDPMQLDSSVR	18	Unmodified	_IGASLADVDPMQLDSSVR_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.46984	1872.92513	0.86443	0.00081038	1.6004	0.0015003	2.4648	0.0023107	937.472223715833	14.852	0.1064	14.852	14.772	14.879	0	273	79	1.14198628764525	0.05188110531156	1.14198628764525	460.767297808552	0	20.9329279697572						496	13	4	NaN	NaN	NaN	1.0202E-06	1	29002	75.012	68.49	1	124690			9339	2080	7893	8099	9339	9339		
IGASTLLSDIER	12	Unmodified	_IGASTLLSDIER_			0	0	0	Q9Y315	Q9Y315	Q9Y315	DERA	Deoxyribose-phosphate aldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.851167	1273.68778	1.4826	0.00094565	-0.066844	-4.2637E-05	1.4157	0.00090301	637.851131980636	13.886	0.12413	13.886	13.815	13.939	0	522	28	0.975277694896658	0.0181793540549698	0.975277694896658	394.862094297207	0	7.36030143278981						234	15	4	NaN	NaN	NaN	0.00018194	1	11604	106.35	77.252	1	59290			9340	3364	7894	8100	9340	9340		
IGCLLSGGLDSSLVAATLLK	20	Unmodified	_IGCLLSGGLDSSLVAATLLK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.558458	1987.10236	1.2666	0.0012597	-0.42334	-0.00042103	0.84328	0.00083869	995.05972160756	19.561	0.13302	19.561	19.534	19.667	0	153	88	1.22165005014568	0.0576096955410552	1.22165005014568	492.70164862665	0	23.2344704333065						758	16	5	NaN	NaN	NaN	2.5097E-11	1	31398	135.89	122.67	1	285850			9341	581	7895	8101	9341	9341		
IGDEDVGR	8	Unmodified	_IGDEDVGR_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.709057	859.40356	-0.77804	-0.00033511	1.7028	0.0007334	0.92474	0.00039829	430.70977956345	2.8627	0.30147	2.8627	2.8183	3.1198	0	783	43	0.798467866007927	0.0286244075786561	0.798467866007927	324.942907386803	0	11.6489324327311						604	35	3	NaN	NaN	NaN	0.059393	1	1701	39.324	17.396	1	326610			9342	816	7896	8102	9342	9342		
IGDEDVGRVIFGLFGK	16	Unmodified	_IGDEDVGRVIFGLFGK_			0	0	1	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.64555	1720.91482	-1.5155	-0.00087086	1.004	0.00057694	-0.51148	-0.00029392	574.646247969875	19.153	0.044336	19.153	19.126	19.171	0	675	46	0.871889544407995	0.0305011094694014	0.871889544407995	528.023568673738	0	18.4717258898627						135	6	2	NaN	NaN	NaN	0.0016648	1	25089	35.45	35.262	1	30139			9343	816	7897	8103	9343	9343		
IGDFGLATVK	10	Unmodified	_IGDFGLATVK_			0	0	0	P04049;P10398;P15056	P04049	P04049	RAF1;ARAF;BRAF	RAF proto-oncogene serine/threonine-protein kinase;Serine/threonine-protein kinase A-Raf;Serine/threonine-protein kinase B-raf	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.78985	1019.56515	0.15547	7.9411E-05	-0.52254	-0.00026691	-0.36707	-0.0001875	510.789812325322	10.525	0.15078	10.525	10.472	10.622	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	353.119419453717	0	8.25981505698996						225	18	3	NaN	NaN	NaN	0.017881	1	4734	41.796	15.573	1	64640			9344	502	7898	8104	9344	9344		
IGDFGLVTSLK	11	Unmodified	_IGDFGLVTSLK_			0	0	0	P19525	P19525	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.329339	1148.64412	0.98409	0.00056618	-0.60114	-0.00034585	0.38296	0.00022033	575.329032899269	13.824	0.16844	13.824	13.762	13.93	0	588	34	0.93076847747433	0.0222838959578864	0.93076847747433	377.281302661904	0	9.03264076818238						370	20	4	NaN	NaN	NaN	0.0054826	1	8040	62.271	50.911	1	150640			9345	770	7899	8105	9345	9345		
IGDLGLATLK	10	Unmodified	_IGDLGLATLK_			0	0	0	Q9H4A3;Q9Y3S1;Q96J92	Q9H4A3	Q9H4A3	WNK1;WNK2;WNK4	Serine/threonine-protein kinase WNK1;Serine/threonine-protein kinase WNK2;Serine/threonine-protein kinase WNK4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.8055	999.596446	-0.34853	-0.00017455	0.16662	8.3443E-05	-0.18192	-9.1104E-05	500.805792183463	11.412	0.097556	11.412	11.358	11.456	0	690	22	0.86171403876517	0.0142496650202144	0.86171403876517	349.907629254963	0	5.78621941920039						120	12	2	NaN	NaN	NaN	0.042837	1	4286	27.589	2.3353	1	33604			9346	2891	7900	8106	9346	9346		
IGDLQAFQGHGAGNLAGLK	19	Unmodified	_IGDLQAFQGHGAGNLAGLK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.994674	1865.97479	2.0573	0.0019215	-0.63163	-0.00058994	1.4257	0.0013316	934.496211320775	11.261	0.09754	11.261	11.216	11.314	0	222	145	1.17589687683038	0.0957806863270725	1.17589687683038	474.462504060886	0	38.6465388001606						615	12	4	NaN	NaN	NaN	2.2621E-10	1	28851	103.23	85.132	1	173380			9347	576	7901	8107	9347	9347		
IGDLQAFQGHGAGNLAGLK	19	Unmodified	_IGDLQAFQGHGAGNLAGLK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.998875	1865.97479	0.85704	0.00053393	0.97876	0.00060977	1.8358	0.0011437	623.334033250683	11.261	0.23062	11.261	11.216	11.447	0	678	145	0.869855008346864	0.0975293332788181	0.869855008346864	526.464452965256	0	59.0279145374818						1604	27	6	NaN	NaN	NaN	7.9699E-15	1	28852	191.95	161.6	1	2050900			9348	576	7901	8107	9348	9348		
IGDLTGYCTNPNR	13	Unmodified	_IGDLTGYCTNPNR_			0	0	0	Q9NVN8	Q9NVN8	Q9NVN8	GNL3L	Guanine nucleotide-binding protein-like 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.84609	1479.67763	1.2574	0.00093156	-1.4511	-0.001075	-0.19366	-0.00014347	740.844544540269	7.0836	0.17744	7.0836	7.0214	7.1989	0	471	46	1.00957851518677	0.0302278047766038	1.00957851518677	408.138548384639	0	12.2200821202053						319	21	3	NaN	NaN	NaN	0.0013526	1	17889	75.474	70.324	1	69097			9349	3071	7902	8108	9349	9349		
IGDPLLEDTR	10	Unmodified	_IGDPLLEDTR_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.798403	1127.58225	0.41798	0.00023608	1.562	0.00088223	1.98	0.0011183	564.799195310836	9.31	0.22173	9.31	9.2213	9.443	0	630	46	0.902373728295776	0.0304503749625084	0.902373728295776	365.852691489586	0	12.3456072440634						510	26	3	NaN	NaN	NaN	4.8908E-05	1	7458	109.88	60.718	1	265670			9350	1123	7903	8109	9350	9350		
IGDQEFDHLPALLEFYK	17	Unmodified	_IGDQEFDHLPALLEFYK_			0	0	0	P46109	P46109	P46109	CRKL	Crk-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.010557	2034.00984	-1.0203	-0.00069276	0.33243	0.00022572	-0.68783	-0.00046704	679.344944045831	18.151	0.15072	18.151	18.045	18.195	0	684	28	0.86578508874114	0.018315911392907	0.86578508874114	523.681956805992	0	11.0786296087279						333	18	4	NaN	NaN	NaN	0.00011057	1	32226	52.201	46.624	1	67988			9351	1079	7904	8110	9351	9351		
IGDTSVSYK	9	Unmodified	_IGDTSVSYK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.248015	968.481476	0.63984	0.00031048	-0.85176	-0.00041331	-0.21192	-0.00010283	485.247646060155	4.1307	0.15953	4.1307	4.0953	4.2549	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	335.984246783882	0	7.46130761424172						275	19	4	NaN	NaN	NaN	0.02502	1	3594	34.781	12.395	1	160160			9352	784	7905	8111	9352	9352		
IGDVVGSSGANQQTSGK	17	Unmodified	_IGDVVGSSGANQQTSGK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.897365	1603.78018	3.2896	0.0026412	-4.0745	-0.0032714	-0.7849	-0.00063019	802.893674605724	3.9445	0.1064	3.9445	3.9179	4.0243	0	462	58	1.01562323939346	0.0382779809350662	1.01562323939346	410.287732040528	0	15.4633976220533						270	13	3	NaN	NaN	NaN	6.3297E-10	1	21703	101.43	97.82	1	61943			9353	3330	7906	8112	9353	9353		
IGDYVQQHGGVSLVEQLLQDPK	22	Unmodified	_IGDYVQQHGGVSLVEQLLQDPK_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.423689	2422.24924	0.98971	0.0008001	-0.55288	-0.00044696	0.43683	0.00035314	808.757407189237	16.502	0.23051	16.502	16.448	16.679	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	592.93004973604	0	13.4212804151102						641	27	6	NaN	NaN	NaN	5.2981E-31	1	36454	237.51	205.79	1	260780			9354	664	7907	8113	9354	9354		
IGEEEIQKPEEK	12	Unmodified	_IGEEEIQKPEEK_			0	0	1	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.864471	1427.71439	3.2844	0.0023479	-2.6982	-0.0019288	0.58627	0.00041911	714.862375292306	3.9534	0.14187	3.9534	3.9002	4.042	0	459	37	1.01763759082241	0.024173890872869	1.01763759082241	411.535265080415	0	9.77598378647878						231	17	3	NaN	NaN	NaN	0.033189	1	16315	48.701	39.187	1	55182			9355	1852	7908	8114	9355	9355		
IGEEEIQKPEEK	12	Unmodified	_IGEEEIQKPEEK_			0	0	1	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.912073	1427.71439	0.77795	0.00037101	0.67708	0.00032291	1.455	0.00069392	476.912508161826	3.9445	0.18613	3.9445	3.8914	4.0775	0	756	37	0.816857749704129	0.024507911533163	0.816857749704129	495.505701602077	0	14.8664928544048						339	22	4	NaN	NaN	NaN	0.00045646	1	16316	85.622	80.471	1	103240			9356	1852	7908	8114	9356	9356		
IGEEFLTDLSQLK	13	Unmodified	_IGEEFLTDLSQLK_			0	0	0	P11216	P11216	P11216	PYGB	Glycogen phosphorylase, brain form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.898314	1491.78207	0.47032	0.00035128	1.3927	0.0010402	1.863	0.0013915	746.899365898951	17.362	0.12414	17.362	17.317	17.442	0	426	55	1.03977710643793	0.0362158044532401	1.03977710643793	420.315206933718	0	14.6397273500111						385	15	4	NaN	NaN	NaN	2.6736E-07	1	18303	122.51	92.754	1	114090			9357	646	7909	8115	9357	9357		
IGEEQSAEDAEDGPPELLFIHGGHTAK	27	Unmodified	_IGEEQSAEDAEDGPPELLFIHGGHTAK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	949.785904	2846.33588	1.8975	0.0018022	-0.096632	-9.178E-05	1.8008	0.0017104	950.453114167439	11.713	0.1596	11.713	11.633	11.793	0	231	133	1.16991841121525	0.0878593105972036	1.16991841121525	706.271466901868	0	53.0400441446312						1337	19	6	NaN	NaN	NaN	3.9359E-15	1	37995	98.889	91.753	1	337240			9358	1890	7910	8116	9358	9358		
IGEEQSAEDAEDGPPELLFIHGGHTAK	27	Unmodified	_IGEEQSAEDAEDGPPELLFIHGGHTAK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	712.591247	2846.33588	1.0731	0.00076468	0.76239	0.00054328	1.8355	0.001308	712.842650501236	11.704	0.2306	11.704	11.562	11.793	0	567	130	0.944945209309785	0.0868570974621159	0.944945209309785	760.607670720161	0	69.913232995201						1275	27	6	NaN	NaN	NaN	5.6076E-10	1	37996	94.838	94.636	1	434880			9359	1890	7910	8116	9359	9359		
IGEEQSPEDAEDGPPELLFIHGGHTAK	27	Unmodified	_IGEEQSPEDAEDGPPELLFIHGGHTAK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	719.095159	2872.35153	1.2203	0.00087751	0.56389	0.00040549	1.7842	0.001283	719.346542183559	11.82	0.2483	11.82	11.687	11.935	0	501	127	0.98941132619024	0.0848430242570435	0.98941132619024	796.364397646144	0	68.289054429064						2037	29	5	NaN	NaN	NaN	3.9969E-15	1	38036	147.01	142.14	1	645160			9360	1582	7911	8117	9360	9360		
IGEEQSPEDAEDGPPELLFIHGGHTAK	27	Unmodified	_IGEEQSPEDAEDGPPELLFIHGGHTAK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	958.457787	2872.35153	1.7195	0.0016481	0.87568	0.00083931	2.5952	0.0024874	958.792873392628	11.82	0.12414	11.82	11.749	11.873	0	228	100	1.17191150690002	0.065808406569456	1.17191150690002	707.443521098603	0	39.7263194253762						1095	15	4	NaN	NaN	NaN	5.5285E-10	1	38037	97.733	96.834	1	224250			9361	1582	7911	8117	9361	9361		
IGEGTYGVVYK	11	Unmodified	_IGEGTYGVVYK_			0	0	0	P06493;P24941;Q00526	P06493;P24941	P06493	CDK1;CDK2;CDK3	Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.311146	1184.60774	1.3253	0.00078632	0.13794	8.184E-05	1.4632	0.00086816	593.311324565995	7.5092	0.20395	7.5092	7.4205	7.6245	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.428579426464	0	9.84683011369572						354	24	2	NaN	NaN	NaN	0.00036518	1	8998	95.311	53.515	1	294950			9362	540;834	7912	8118	9362	9362		
IGEHMEEHGIK	11	Unmodified	_IGEHMEEHGIK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	427.208167	1278.60267	0.55048	0.00023517	-0.15763	-6.7342E-05	0.39285	0.00016783	427.208411475885	2.9868	0.4877	2.9868	2.8272	3.3149	0	861	55	0.745211914437924	0.0369260470620048	0.745211914437924	452.550074377688	0	22.4243400039953						1048	56	5	NaN	NaN	NaN	0.0030641	1	11717	99.855	83.398	1	448040			9363	1914	7913	8119	9363	9363		
IGEHMEEHGIK	11	Unmodified	_IGEHMEEHGIK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.308612	1278.60267	2.5394	0.001626	1.4923	0.00095553	4.0317	0.0025815	640.81199719296	2.9868	0.25715	2.9868	2.8449	3.102	0	546	73	0.959108205975751	0.0485891419781381	0.959108205975751	388.299511558952	0	19.6715448576368						357	30	2	NaN	NaN	NaN	0.00056181	1	11719	97.277	73.156	1	89359			9364	1914	7913	8119	9364	9364		
IGEHTPSALAIMENANVLAR	20	Unmodified	_IGEHTPSALAIMENANVLAR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.037001	2106.08917	0.34045	0.00023935	-0.85733	-0.00060273	-0.51687	-0.00036338	703.370878892233	15.056	0.29261	15.056	14.959	15.251	0	633	49	0.900343422309015	0.0324871583843739	0.900343422309015	544.458791331017	0	19.6457468888628						1056	34	6	NaN	NaN	NaN	9.7295E-12	1	33405	185.9	130.32	1	610810			9365	504	7914	8120	9365	9365		
IGEHTPSALAIMENANVLAR	20	Unmodified	_IGEHTPSALAIMENANVLAR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.05186	2106.08917	1.88	0.0019816	-1.144	-0.0012058	0.73602	0.0007758	1054.55273789228	15.047	0.21281	15.047	14.959	15.171	1.7764E-15	117	100	1.24546401832526	0.0654839959432147	1.24546401832526	502.109115304942	0	26.3998885442655						1567	25	5	NaN	NaN	NaN	3.1755E-07	1	33406	63.766	53.745	1	633060			9366	504	7914	8120	9366	9366		
IGEHTPSALAIMENANVLAR	20	Unmodified	_IGEHTPSALAIMENANVLAR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.037001	2106.08917	1.386	0.00097442	0.16404	0.00011533	1.5501	0.0010897	703.371759244215	15.038	0.31036	15.038	14.888	15.198	0	465	130	1.01360860968299	0.0867850544734845	1.01360860968299	612.952903461156	0	52.4809582400784						2902	36	6	NaN	NaN	NaN	3.4211E-11	1	33407	139.7	109.73	1	1710200			9367	504	7914	8120	9367	9367		
IGEHTPSALAIMENANVLAR	20	Oxidation (M)	_IGEHTPSALAIM(Oxidation (M))ENANVLAR_	IGEHTPSALAIM(1)ENANVLAR	IGEHTPSALAIM(55)ENANVLAR	0	1	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.368639	2122.08409	0.94121	0.00066672	-0.41934	-0.00029705	0.52187	0.00036968	708.702749648662	10.986	0.0887	10.986	10.933	11.021	0	615	28	0.912521036363781	0.0182575606051391	0.912521036363781	551.795656806584	0	11.0402305747859						175	11	3	NaN	NaN	NaN	1.2219E-05	1	33647	54.556	47.567	1	31946			9368	504	7914	8121	9368	9368	84	
IGEIATGSPVSTELGHVLIEISSTHK	26	Unmodified	_IGEIATGSPVSTELGHVLIEISSTHK_			0	0	0	Q9UHR4	Q9UHR4	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	669.611717	2674.41776	0.2714	0.00018173	-1.0636	-0.00071217	-0.79215	-0.00053043	669.861871915859	17.814	0.079791	17.814	17.779	17.858	0	561	25	0.948993180460448	0.0161896439888687	0.948993180460448	764.104528940685	0	13.0354785983076						161	10	4	NaN	NaN	NaN	0.012692	1	37527	16.417	15.975	1	29894			9369	3221	7915	8122	9369	9369		
IGEMPLTDSILCDGLTDAFHNCHMGITAENVAK	33	Unmodified	_IGEMPLTDSILCDGLTDAFHNCHMGITAENVAK_			0	0	0	Q9BWD1	Q9BWD1	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	908.422841	3629.66226	0.48572	0.00044124	2.4693	0.0022431	2.955	0.0026844	908.92677883089	18.107	0.070919	18.107	18.062	18.133	0	387	25	1.06589869032374	0.0160604132229905	1.06589869032374	857.065351870563	0	12.9138198921779						190	9	5	NaN	NaN	NaN	2.9097E-05	1	38695	28.095	28.066	1	39056			9370	2777	7916	8123	9370	9370		
IGEWELIQESGVPLK	15	Unmodified	_IGEWELIQESGVPLK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.641805	1696.90359	-1.1741	-0.00066528	-0.96563	-0.00054717	-2.1397	-0.0012124	566.975485623095	15.961	0.070915	15.961	15.934	16.005	0	708	19	0.849494101904619	0.0122250304195799	0.849494101904619	514.518803701574	0	7.40441636097881						119	9	3	NaN	NaN	NaN	0.049073	1	24415	18.811	17.93	1	22225			9371	1072	7917	8124	9371	9371		
IGEWELIQESGVPLK	15	Unmodified	_IGEWELIQESGVPLK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.45907	1696.90359	1.4381	0.0012216	-0.68632	-0.000583	0.75182	0.00063864	849.457557448318	15.978	0.15962	15.978	15.916	16.076	0	291	85	1.12999890578964	0.0560259150282008	1.12999890578964	456.278214529099	0	22.6225037435437						943	19	4	NaN	NaN	NaN	0.00015383	1	24416	95.656	87.691	1	322190			9372	1072	7917	8124	9372	9372		
IGFDVVTLSGTR	12	Unmodified	_IGFDVVTLSGTR_			0	0	0	Q9BSD7	Q9BSD7	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.848427	1263.6823	0.77086	0.00048784	-1.1593	-0.00073365	-0.38842	-0.00024581	632.847943890327	13.77	0.11524	13.77	13.735	13.85	0	549	31	0.957085760909907	0.0202230534711471	0.957085760909907	387.52961289169	0	8.18843243024628						216	14	3	NaN	NaN	NaN	0.00070303	1	11334	85.622	62.569	1	57859			9373	2722	7918	8125	9373	9373		
IGFFNQQYAEQLR	13	Unmodified	_IGFFNQQYAEQLR_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.407172	1612.79979	2.1213	0.0017127	1.2073	0.00097481	3.3286	0.0026876	807.408550270821	13.434	0.18623	13.434	13.38	13.567	0	369	46	1.07793901817685	0.0300863062965449	1.07793901817685	435.440958308856	0	12.1535725350207						533	22	4	NaN	NaN	NaN	2.2124E-11	1	21973	165.39	123.57	1	181620			9374	2308	7919	8126	9374	9374		
IGFPWSEIR	9	Unmodified	_IGFPWSEIR_			0	0	0	P35241;P15311;P26038	P35241;P15311;P26038	P15311	RDX;EZR;MSN	Radixin;Ezrin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.795466	1103.57638	0.54201	0.00029962	-0.2646	-0.00014627	0.27741	0.00015335	552.795278607983	15.145	0.35467	15.145	15.056	15.411	0	633	112	0.900343422309015	0.0752048579705273	0.900343422309015	365.12543389173	0	30.498591667203						1649	41	5	NaN	NaN	NaN	0.00094714	1	6813	90.308	70.821	1	2257000			9375	710;846;962	7920	8127	9375	9375		
IGGDAATTVNNSTPDFGFGGQK	22	Unmodified	_IGGDAATTVNNSTPDFGFGGQK_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1077.50854	2153.00253	2.0413	0.0021996	-0.84011	-0.00090522	1.2012	0.0012943	1078.00883985791	11.234	0.070944	11.234	11.199	11.27	0	183	67	1.20177511391933	0.0437789254006584	1.20177511391933	484.426758467297	0	17.6469646237376						418	9	4	NaN	NaN	NaN	2.234E-11	1	34080	109.16	95.304	1	91446			9376	2446	7921	8128	9376	9376		
IGGDAATTVNNSTPDFGFGGQK	22	Unmodified	_IGGDAATTVNNSTPDFGFGGQK_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.674785	2153.00253	1.167	0.00083867	2.529	0.0018175	3.696	0.0026562	719.010306143726	11.225	0.12414	11.225	11.146	11.27	0	507	43	0.985374541851584	0.0282653130088721	0.985374541851584	595.79410715251	0	17.0902598070609						253	15	3	NaN	NaN	NaN	0.015158	1	34081	51.07	39.39	1	52243			9377	2446	7921	8128	9377	9377		
IGGDAGTSLNSNDYGYGGQK	20	Unmodified	_IGGDAGTSLNSNDYGYGGQK_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.445408	1972.87626	2.9424	0.0029055	-2.2123	-0.0021845	0.73013	0.00072096	987.944468765315	7.2255	0.18621	7.2255	7.1723	7.3585	0	279	112	1.13799159301878	0.0738664041833432	1.13799159301878	458.984457991764	0	29.7924270230816						1229	22	5	NaN	NaN	NaN	2.7875E-29	1	31160	184.98	178.46	1	446890			9378	2473	7922	8129	9378	9378		
IGGGIDVPVPR	11	Unmodified	_IGGGIDVPVPR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.314023	1078.61349	0.80128	0.00043294	-1.7975	-0.00097123	-0.99625	-0.00053829	540.313205817103	10.09	0.19509	10.09	9.975	10.17	0	660	76	0.882057989648486	0.0508352069284729	0.882057989648486	357.812048193267	0	20.6216028026165						747	23	3	NaN	NaN	NaN	0.016639	1	6186	41.796	19.868	1	229100			9379	2446	7923	8130	9379	9379		
IGGIGTVPVGR	11	Unmodified	_IGGIGTVPVGR_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.308741	1024.60293	0.79438	0.00040776	0.050759	2.6055E-05	0.84514	0.00043382	513.309022155106	7.9527	0.28387	7.9527	7.8995	8.1833	0	696	55	0.857641857947968	0.0366496414922302	0.857641857947968	348.138663112661	0	14.8770224708849						856	33	3	NaN	NaN	NaN	0.0019168	1	4866	76.605	54.218	1	751970			9380	1446	7924	8131	9380	9380		
IGGVQQDTILAEGLHFR	17	Unmodified	_IGGVQQDTILAEGLHFR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.667125	1852.97955	1.0539	0.00065204	-0.029879	-1.8485E-05	1.0241	0.00063355	619.001182595934	13.691	0.30146	13.691	13.637	13.939	0	597	79	0.924688525662974	0.0526601189879869	0.924688525662974	559.680411625298	0	31.8732592148286						920	35	6	NaN	NaN	NaN	2.1033E-19	1	28562	249.45	239.54	1	1055900			9381	2660	7925	8132	9381	9381		
IGGVQQDTILAEGLHFR	17	Unmodified	_IGGVQQDTILAEGLHFR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.497049	1852.97955	1.5987	0.0014828	-0.14947	-0.00013863	1.4492	0.0013442	927.998597316174	13.691	0.1064	13.691	13.655	13.762	0	189	97	1.1977968526266	0.0636522571430049	1.1977968526266	483.323932934148	0	25.6843714316249						761	13	4	NaN	NaN	NaN	1.473E-25	1	28563	174.02	159.07	1	224860			9382	2660	7925	8132	9382	9382		
IGHPAPNFK	9	Unmodified	_IGHPAPNFK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.769252	979.52395	1.2981	0.00063706	1.5979	0.0007842	2.896	0.0014213	490.770039088382	3.4479	0.37249	3.4479	3.4035	3.776	-4.4409E-16	702	115	0.853568545818287	0.0775114476792828	0.853568545818287	346.696472617779	0	31.4830550276928						1585	43	3	NaN	NaN	NaN	0.00010979	1	3839	100.75	75.904	1	1639700			9383	1564	7926	8133	9383	9383		
IGHVGMQIEHIIENIVAVTK	20	Unmodified	_IGHVGMQIEHIIENIVAVTK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.408546	2200.20381	0.036511	2.6814E-05	-0.66224	-0.00048635	-0.62573	-0.00045954	734.74250338277	19.871	0.097528	19.871	19.853	19.951	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	554.121014951441	0	12.2615436234391						273	12	5	NaN	NaN	NaN	6.7473E-11	1	34681	89.489	82.808	1	73723			9384	378	7927	8134	9384	9384		
IGHYILGDTLGVGTFGK	17	Unmodified	_IGHYILGDTLGVGTFGK_			0	0	0	Q13131	Q13131	Q13131	PRKAA1	5-AMP-activated protein kinase catalytic subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.317433	1746.93047	-1.1998	-0.00069988	0.36636	0.0002137	-0.83347	-0.00048618	583.317890812012	13.682	0.097532	13.682	13.655	13.753	0	717	25	0.84338031290707	0.0163045710776146	0.84338031290707	510.697432811165	0	9.8730103904411						162	12	3	NaN	NaN	NaN	0.012496	1	25813	64.266	60.283	1	32760			9385	1631	7928	8135	9385	9385		
IGHYILGDTLGVGTFGK	17	Unmodified	_IGHYILGDTLGVGTFGK_			0	0	0	Q13131	Q13131	Q13131	PRKAA1	5-AMP-activated protein kinase catalytic subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.472512	1746.93047	1.7268	0.00151	3.8016	0.0033244	5.5284	0.0048344	874.472640766236	13.682	0.097532	13.682	13.655	13.753	-1.7764E-15	267	52	1.14597988355104	0.0339292424240165	1.14597988355104	462.62373383668	0	13.6969880900613						197	12	3	NaN	NaN	NaN	0.00019069	1	25815	57.042	53.306	1	39485			9386	1631	7928	8135	9386	9386		
IGIEIIK	7	Unmodified	_IGIEIIK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	393.260197	784.50584	-1.9094	-0.00075088	-0.41212	-0.00016207	-2.3215	-0.00091295	393.260067763009	10.294	0.19505	10.294	10.241	10.436	0	822	49	0.771863999559055	0.0327774421391716	0.771863999559055	314.586964145751	0	13.3590321882036						509	23	4	NaN	NaN	NaN	0.01605	1	867	56.091	0	1	272570			9387	635	7929	8136	9387	9387		
IGILHENFQTLK	12	Unmodified	_IGILHENFQTLK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.601393	1411.78235	-1.5888	-0.00074929	-0.6074	-0.00028645	-2.1962	-0.0010357	471.601037142723	10.214	0.13299	10.214	10.17	10.303	0	807	40	0.782101955086014	0.0266075709299319	0.782101955086014	474.474146046343	0	16.1418909814111						389	16	4	NaN	NaN	NaN	0.0039483	1	15823	64.906	47.436	1	158200			9388	3465	7930	8137	9388	9388		
IGITNHDEYSLVR	13	Unmodified	_IGITNHDEYSLVR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.891355	1515.76816	2.2877	0.0017361	4.7556	0.003609	7.0433	0.0053451	759.39750710187	8.3342	0.097587	8.3342	8.281	8.3785	0	366	28	1.07994477139643	0.0180492926905949	1.07994477139643	436.488902024837	0	7.29511004405862						267	12	4	NaN	NaN	NaN	0.053484	1	19008	33.751	31.45	1	77521			9389	3406	7931	8138	9389	9389		
IGIVGLPNVGK	11	Unmodified	_IGIVGLPNVGK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.834591	1065.65463	0.1857	9.9133E-05	-0.87668	-0.000468	-0.69098	-0.00036887	533.834196655863	12.307	0.22168	12.307	12.183	12.405	0	675	58	0.871889544407995	0.0386347449867347	0.871889544407995	353.741386743253	0	15.6748160999671						748	26	4	NaN	NaN	NaN	0.0034101	1	5869	53.878	35.475	1	384860			9390	3044	7932	8139	9390	9390		
IGLDFCK	7	Unmodified	_IGLDFCK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.717839	851.421125	-1.5807	-0.0006745	-2.4241	-0.0010344	-4.0048	-0.0017089	426.716980748794	9.2391	0.20398	9.2391	9.1947	9.3987	0	828	31	0.767766820543916	0.0204887515295875	0.767766820543916	312.494909675971	0	8.33929050759963						381	24	4	NaN	NaN	NaN	0.06995	1	1581	33.813	25.05	1	125140			9391	93	7933	8140	9391	9391		
IGLETSLR	8	Unmodified	_IGLETSLR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.761092	887.507631	-0.68043	-0.00030263	-1.1192	-0.00049777	-1.7996	-0.0008004	444.760861583901	7.8108	0.1419	7.8108	7.7576	7.8995	0	750	28	0.820941264895493	0.0183719873373771	0.820941264895493	333.922385311804	0	7.47290713349167						231	17	3	NaN	NaN	NaN	0.019378	1	2117	51.43	29.502	1	58155			9392	3325	7934	8141	9392	9392		
IGLFGGAGVGK	11	Unmodified	_IGLFGGAGVGK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.284734	974.554916	0.47557	0.00023221	0.22282	0.0001088	0.69839	0.00034101	488.285052850229	10.472	0.4079	10.472	10.401	10.809	0	714	70	0.845418525735192	0.0468658998866454	0.845418525735192	343.410401895304	0	19.0370059625345						1029	47	4	NaN	NaN	NaN	0.042812	1	3736	30.593	4.3696	1	888910			9393	541	7935	8142	9393	9393		
IGLFYMDNDLITR	13	Unmodified	_IGLFYMDNDLITR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.900334	1569.78611	0.62454	0.00049083	1.7649	0.001387	2.3894	0.0018778	785.902066907566	17.025	0.20392	17.025	16.945	17.149	0	378	49	1.07192009927972	0.0321031230176227	1.07192009927972	433.110590178792	0	12.9713050124611						594	24	3	NaN	NaN	NaN	0.0023396	1	20659	76.255	64.237	1	218050			9394	1790	7936	8143	9394	9394		
IGLIHGHQVIPWGDMASLALLQR	23	Unmodified	_IGLIHGHQVIPWGDMASLALLQR_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	632.100693	2524.37367	0.27784	0.00017562	-0.50642	-0.00032011	-0.22858	-0.00014449	632.350746770181	17.548	0.12414	17.548	17.513	17.637	0	555	40	0.953040030838688	0.0262990708755764	0.953040030838688	767.598580731934	0	21.1818274421233						348	15	5	NaN	NaN	NaN	0.00044436	1	36945	59.997	58.746	1	97844			9395	3183	7937	8144	9395	9395		
IGLIHGHQVIPWGDMASLALLQR	23	Unmodified	_IGLIHGHQVIPWGDMASLALLQR_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.465166	2524.37367	0.75514	0.00063618	0.0446	3.7574E-05	0.79974	0.00067375	842.799577693524	17.548	0.088686	17.548	17.513	17.601	0	468	28	1.01159370163332	0.0181341741775967	1.01159370163332	611.070540926044	0	10.9542592110441						244	11	4	NaN	NaN	NaN	1.4161E-09	1	36946	99.909	92.16	1	48942			9396	3183	7937	8144	9396	9396		
IGLINDMVR	9	Unmodified	_IGLINDMVR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.789327	1029.5641	0.29579	0.00015257	-0.73385	-0.00037851	-0.43806	-0.00022595	515.789069183658	11.447	0.27507	11.447	11.341	11.616	0	684	49	0.86578508874114	0.03255936673099	0.86578508874114	351.421762930178	0	13.2158317407979						628	32	4	NaN	NaN	NaN	0.00036794	1	4987	102.46	59.63	1	291670			9397	1728	7938	8145	9397	9397		
IGLIQFCLSAPK	12	Unmodified	_IGLIQFCLSAPK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.878673	1345.74279	0.9768	0.00065824	0.41541	0.00027994	1.3922	0.00093818	673.879554224932	15.704	0.25715	15.704	15.65	15.908	0	465	67	1.01360860968299	0.0443555739559077	1.01360860968299	410.145399516606	0	17.9479874451972						1136	30	5	NaN	NaN	NaN	3.2736E-07	1	13787	138.23	103.28	1	763250			9398	1175	7939	8146	9398	9398		
IGLSVSEVIEGYEIACR	17	Unmodified	_IGLSVSEVIEGYEIACR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.324148	1893.95061	-0.089655	-5.6691E-05	-0.96719	-0.00061157	-1.0568	-0.00066827	632.32360918934	17.708	0.10641	17.708	17.672	17.779	0	639	19	0.896281965493857	0.0121860610078076	0.896281965493857	542.399840401937	0	7.37459616530509						167	13	4	NaN	NaN	NaN	8.9154E-05	1	29472	84.309	80.804	1	32289			9399	1174	7940	8147	9399	9399		
IGLSVSEVIEGYEIACR	17	Unmodified	_IGLSVSEVIEGYEIACR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.982583	1893.95061	1.9365	0.0018358	-2.273	-0.0021548	-0.3365	-0.00031899	948.482126029988	17.708	0.33693	17.708	17.628	17.965	0	252	46	1.15595906938629	0.0299293335148181	1.15595906938629	466.366960843284	0	12.0748672518147						948	39	5	NaN	NaN	NaN	4.6947E-14	1	29473	163.93	161.69	1	298240			9400	1174	7940	8147	9400	9400		
IGLVEALCGFQFTFK	15	Unmodified	_IGLVEALCGFQFTFK_			0	0	0	O60884	O60884	O60884	DNAJA2	DnaJ homolog subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.452733	1728.89091	1.3835	0.0011974	-0.79575	-0.00068868	0.58776	0.00050867	865.451862585206	19.915	0.04433	19.915	19.898	19.942	0	312	31	1.11600111266355	0.0200064846869903	1.11600111266355	450.558547815913	0	8.0771359322016						86	6	2	NaN	NaN	NaN	0.0053237	1	25302	51.454	46.637	1	38331			9401	291	7941	8148	9401	9401		
IGNFLNYGSHTGDADGFK	18	Unmodified	_IGNFLNYGSHTGDADGFK_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.29899	1911.87514	-0.3769	-0.00024057	0.095793	6.1145E-05	-0.2811	-0.00017943	638.298985794746	10.684	0.079813	10.684	10.649	10.729	0	720	37	0.841341816837976	0.0244568589772431	0.841341816837976	509.117218256851	0	14.7994640948556						266	10	4	NaN	NaN	NaN	0.00030855	1	29861	72.031	68.946	1	71281			9402	1920	7942	8149	9402	9402		
IGPEPTTDSFIAVMHGPTEGVVPGNALVVDPR	32	Unmodified	_IGPEPTTDSFIAVMHGPTEGVVPGNALVVDPR_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1091.55885	3271.65471	1.0374	0.0011324	1.0502	0.0011464	2.0877	0.0022788	1092.22895264443	17.149	0.10641	17.149	17.096	17.202	0	306	58	1.12000185836644	0.0380149492667927	1.12000185836644	675.709573490386	0	22.9348415481995						515	13	4	NaN	NaN	NaN	0.072098	1	38528	2.3	0.10868	1	99523			9403	2897	7943	8150	9403	9403		
IGPILDNSTLQSEVK	15	Unmodified	_IGPILDNSTLQSEVK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.440877	1612.8672	2.3171	0.0018709	-0.024213	-1.955E-05	2.2929	0.0018513	807.441342726061	11.82	0.23941	11.82	11.758	11.997	0	357	52	1.08596037261705	0.0340884182480441	1.08596037261705	438.681088662901	0	13.7702487170972						852	28	5	NaN	NaN	NaN	3.7058E-06	1	21986	110.91	85.292	1	764070			9404	905	7944	8151	9404	9404		
IGPILDNSTLQSEVKPILEK	20	Unmodified	_IGPILDNSTLQSEVKPILEK_			0	0	1	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.082493	2193.22565	-0.037116	-2.7172E-05	1.5379	0.0011259	1.5008	0.0010987	732.417489395294	14.817	0.088686	14.817	14.772	14.861	-1.7764E-15	450	37	1.02367897599655	0.0241572026210712	1.02367897599655	618.881693791011	0	14.6046278432424						301	11	4	NaN	NaN	NaN	0.00047687	1	34604	67.927	66.079	1	83160			9405	905	7945	8152	9405	9405		
IGPILDTNALQGEVK	15	Unmodified	_IGPILDTNALQGEVK_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.438138	1566.86172	2.0541	0.0016113	-0.50388	-0.00039526	1.5502	0.0012161	784.438052204585	13.114	0.11528	13.114	13.079	13.194	0	348	64	1.09197348738011	0.0420860255773043	1.09197348738011	441.2203946693	0	17.0051865085408						619	14	5	NaN	NaN	NaN	7.2414E-12	1	20566	168.43	143.61	1	285450			9406	906	7946	8153	9406	9406		
IGPITPLEFYR	11	Unmodified	_IGPITPLEFYR_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.363713	1304.71287	1.1279	0.00073693	0.77398	0.00050569	1.9019	0.0012426	653.364361511726	15.171	0.22168	15.171	15.109	15.331	0	492	49	0.995464410099171	0.0322808922550346	0.995464410099171	402.932294985576	0	13.0662772757565						696	26	4	NaN	NaN	NaN	9.008E-08	1	12507	158.37	124.97	1	438920			9407	1706	7947	8154	9407	9407		
IGPLGLSPK	9	Unmodified	_IGPLGLSPK_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.276378	880.538203	-1.4385	-0.00063477	-0.44455	-0.00019617	-1.883	-0.00083094	441.276226770384	8.7245	0.20416	8.7245	8.6446	8.8487	0	762	58	0.812773098473386	0.0387961087327446	0.812773098473386	330.63978682029	0	15.7824331845446						890	24	4	NaN	NaN	NaN	0.0046121	1	2018	87.251	44.416	1	489900			9408	900	7948	8155	9408	9408		
IGPQHQAGSDSLLTGMAFFK	20	Unmodified	_IGPQHQAGSDSLLTGMAFFK_			0	0	0	Q9UIV1	Q9UIV1	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.35433	2104.04116	-0.59292	-0.00041644	-1.2805	-0.00089938	-1.8734	-0.0013158	702.687726198161	15.269	0.10638	15.269	15.234	15.34	0	678	40	0.869855008346864	0.0264526463218361	0.869855008346864	526.02508446759	0	15.9966378101101						238	13	3	NaN	NaN	NaN	1.5766E-05	1	33374	65.12	44.831	1	47545			9409	3242	7949	8156	9409	9409		
IGPSILNSDLANLGAECLR	19	Unmodified	_IGPSILNSDLANLGAECLR_			0	0	0	Q96AT9	Q96AT9	Q96AT9	RPE	Ribulose-phosphate 3-epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.02531	2012.03607	0.62118	0.00062554	0.037825	3.8091E-05	0.659	0.00066363	1007.5272876552	17.043	0.19506	17.043	16.936	17.131	0	198	46	1.1918274123006	0.0298513074071098	1.1918274123006	480.632606050186	0	12.0382460790939						439	23	4	NaN	NaN	NaN	3.6697E-07	1	31837	114.5	106.93	1	113590			9410	2476	7950	8157	9410	9410		
IGPYQPNVPVGIDYVIPK	18	Unmodified	_IGPYQPNVPVGIDYVIPK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.043301	1968.07205	1.9657	0.0019363	-0.47687	-0.00046974	1.4888	0.0014665	985.544655368567	16.067	0.25714	16.067	15.97	16.227	0	219	145	1.17788915118882	0.0955572151284918	1.17788915118882	475.084376700266	0	38.5416063495566						2935	30	5	NaN	NaN	NaN	9.2345E-07	1	31080	80.379	72.415	1	1590100			9411	1062	7951	8158	9411	9411		
IGQGTFGEVFK	11	Unmodified	_IGQGTFGEVFK_			0	0	0	P50750	P50750	P50750	CDK9	Cyclin-dependent kinase 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.811313	1181.60807	1.2372	0.00073221	-0.6671	-0.0003948	0.57014	0.00033741	591.810785764418	11.048	0.19509	11.048	10.986	11.181	0	606	49	0.918606045818476	0.0324376543962731	0.918606045818476	372.228083785358	0	13.1440523316591						461	23	3	NaN	NaN	NaN	0.023287	1	8923	39.039	18.805	1	120910			9412	1171	7952	8159	9412	9412		
IGQGYLIK	8	Unmodified	_IGQGYLIK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.268553	890.522553	-0.86015	-0.00038386	0.8317	0.00037116	-0.028441	-1.2693E-05	446.268882643362	7.0747	0.35478	7.0747	7.0303	7.3851	0	768	46	0.808687310729125	0.0306498114995809	0.808687310729125	328.921049691527	0	12.4663365401394						810	41	4	NaN	NaN	NaN	0.0021595	1	2177	73.637	26.835	1	748250			9413	1010	7953	8160	9413	9413		
IGQPTLLLYVDAGPETMTQR	20	Unmodified	_IGQPTLLLYVDAGPETMTQR_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.075	2202.13545	-0.13723	-0.00015124	-0.46129	-0.00050838	-0.59852	-0.00065962	1102.57679715158	16.883	0.15079	16.883	16.803	16.954	0	96	37	1.2593374219024	0.0237715788375366	1.2593374219024	507.55709433864	0	9.58077896581153						455	18	4	NaN	NaN	NaN	1.1794E-05	1	34708	68.127	54.269	1	103090			9414	485	7954	8161	9414	9414		
IGQQPQQPGAPPQQDYTK	18	Unmodified	_IGQQPQQPGAPPQQDYTK_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.992328	1979.9701	3.2536	0.0032243	-2.4323	-0.0024104	0.82126	0.00081386	991.491243832025	5.1238	0.133	5.1238	5.0972	5.2302	0	234	37	1.16792504164217	0.0239253701755411	1.16792504164217	471.045681430185	0	9.64954247574053						232	16	2	NaN	NaN	NaN	4.7075E-07	1	31284	109.47	91.37	1	54065			9415	2446	7955	8162	9415	9415		
IGQVHYALETTVK	13	Unmodified	_IGQVHYALETTVK_			0	0	0	Q9UIQ6	Q9UIQ6	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.936553	1457.78783	-1.1565	-0.00056314	-1.045	-0.00050885	-2.2015	-0.001072	486.936191575616	7.2343	0.08866	7.2343	7.1989	7.2875	0	849	22	0.753417699604308	0.0143571223589389	0.753417699604308	456.932641484193	0	8.7073051867871						87	11	3	NaN	NaN	NaN	0.03877	1	17208	28.228	25.749	1	14029			9416	3241	7956	8163	9416	9416		
IGSCTQQDVELHVQK	15	Unmodified	_IGSCTQQDVELHVQK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.430518	1740.84648	3.0578	0.0026646	-4.6522	-0.0040541	-1.5945	-0.0013895	871.42884609031	5.576	0.079766	5.576	5.5583	5.6381	0	318	40	1.11199926528787	0.0260173856244983	1.11199926528787	448.918387559608	0	10.5033188129335						276	10	4	NaN	NaN	NaN	3.4971E-06	1	25624	119.43	109.18	1	52441			9417	705	7957	8164	9417	9417		
IGSCTQQDVELHVQK	15	Unmodified	_IGSCTQQDVELHVQK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.289437	1740.84648	0.58778	0.00034167	0.70687	0.00041089	1.2946	0.00075257	581.290049020372	5.576	0.15967	5.576	5.5405	5.7002	0	705	28	0.851531465363931	0.0183337258580997	0.851531465363931	515.647422193692	0	11.1020424522944						347	19	5	NaN	NaN	NaN	6.6587E-12	1	25628	181.44	161.88	1	127840			9418	705	7957	8164	9418	9418		
IGSDQDLGIELLNVLHR	17	Unmodified	_IGSDQDLGIELLNVLHR_			0	0	0	Q86XA9	Q86XA9	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.346052	1891.01633	-0.20828	-0.0001315	0.41783	0.00026379	0.20955	0.0001323	631.680847336981	18.08	0.088672	18.08	18.036	18.124	0	603	25	0.920633820089869	0.0162188234604482	0.920633820089869	557.143042270383	0	9.81519953711711						200	11	4	NaN	NaN	NaN	2.0033E-05	1	29400	98.865	89.123	1	45749			9419	2186	7958	8165	9419	9419		
IGSDVELLLR	10	Unmodified	_IGSDVELLLR_			0	0	0	Q5U5X0	Q5U5X0	Q5U5X0	LYRM7	Complex III assembly factor LYRM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.826963	1113.63937	-0.26776	-0.00014937	-0.82829	-0.00046204	-1.0961	-0.00061141	557.826482153564	13.212	0.14188	13.212	13.159	13.3	0	681	37	0.867820189810857	0.0244161317005186	0.867820189810857	351.896734013042	0	9.90061893411058						312	17	3	NaN	NaN	NaN	6.7171E-06	1	7091	119.07	65.19	1	148260			9420	2004	7959	8166	9420	9420		
IGSESTKPPITFDK	14	Unmodified	_IGSESTKPPITFDK_			0	0	1	Q7Z3U7	Q7Z3U7	Q7Z3U7	MON2	Protein MON2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.271601	1518.79297	-1.829	-0.0009278	-0.17558	-8.9068E-05	-2.0046	-0.0010169	507.271723939595	7.0836	0.071031	7.0836	7.0303	7.1014	0	843	31	0.757518876820989	0.0204973173150498	0.757518876820989	459.24662273559	0	12.4265203681529						86	9	2	NaN	NaN	NaN	0.060524	1	19101	16.759	14.088	1	16326			9421	2133	7960	8167	9421	9421		
IGSFGPQEDLLFLR	14	Unmodified	_IGSFGPQEDLLFLR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.427573	1590.84059	1.5747	0.0012541	0.4883	0.00038889	2.063	0.001643	796.428102945305	17.433	0.15075	17.433	17.353	17.504	0	333	49	1.10198982404297	0.03205007854169	1.10198982404297	445.208771610654	0	12.9483737383535						623	18	4	NaN	NaN	NaN	0.00028835	1	21304	70.195	37.646	1	225890			9422	1625	7961	8168	9422	9422		
IGSGFDNIDIK	11	Unmodified	_IGSGFDNIDIK_			0	0	0	Q13363	Q13363	Q13363	CTBP1	C-terminal-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.806228	1177.5979	0.84954	0.00050107	0.36925	0.00021779	1.2188	0.00071885	589.806964692528	10.285	0.11526	10.285	10.241	10.356	0	600	34	0.922661313351899	0.022302429094845	0.922661313351899	373.886005728889	0	9.03751572939643						271	14	3	NaN	NaN	NaN	0.041863	1	8824	43.168	24.766	1	69236			9423	1657	7962	8169	9423	9423		
IGSLDNITHVPGGGNK	16	Unmodified	_IGSLDNITHVPGGGNK_			0	0	0	P10636	P10636	P10636	MAPT	Microtubule-associated protein tau	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.945999	1577.81617	-0.95486	-0.00050316	-0.66915	-0.00035261	-1.624	-0.00085577	526.945658791532	7.8552	0.079796	7.8552	7.8197	7.8995	0	816	22	0.775960037304758	0.0143351345420983	0.775960037304758	470.267833565636	0	8.68775754019515						94	10	2	NaN	NaN	NaN	0.0017624	1	20912	36.46	33.789	1	29213			9424	632	7963	8170	9424	9424		
IGSLIDVNQSK	11	Unmodified	_IGSLIDVNQSK_			0	0	0	P61326;Q96A72	P61326	P61326	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.327328	1172.6401	1.2531	0.000736	-0.72899	-0.00042816	0.52415	0.00030785	587.327095772461	8.077	0.14198	8.077	8.0325	8.1745	0	618	46	0.910492137470517	0.0304292729379168	0.910492137470517	368.97280968467	0	12.3313248632292						389	17	4	NaN	NaN	NaN	1.9233E-07	1	8678	132.39	85.042	1	250490			9425	1342	7964	8171	9425	9425		
IGSSLYALGTQDSTDICK	18	Unmodified	_IGSSLYALGTQDSTDICK_			0	0	0	Q9UNH7	Q9UNH7	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.96713	1927.91971	2.146	0.0020708	0.087503	8.4438E-05	2.2335	0.0021553	965.468500856183	11.456	0.18622	11.456	11.367	11.553	0	252	58	1.15595906938629	0.0378948642393759	1.15595906938629	466.307189799825	0	15.2865686331704						568	22	5	NaN	NaN	NaN	2.5978E-10	1	30236	110.91	98.887	1	135980			9426	3296	7965	8172	9426	9426		
IGSTIDDTISK	11	Unmodified	_IGSTIDDTISK_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.303518	1148.59248	0.87368	0.00050263	-0.1765	-0.00010154	0.69717	0.00040109	575.303335627559	6.1614	0.14188	6.1614	6.117	6.2589	0	657	40	0.884090832094921	0.026423290319909	0.884090832094921	358.36099426897	0	10.7105245831613						325	17	4	NaN	NaN	NaN	0.0016517	1	8033	57.888	37.654	1	134300			9427	1763	7966	8173	9427	9427		
IGTVSIFHMSDSYSETPLEDFVPQK	25	Unmodified	_IGTVSIFHMSDSYSETPLEDFVPQK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	943.121347	2826.34221	0.64816	0.0006113	-3.2671	-0.0030813	-2.6189	-0.00247	943.452076406011	17.628	0.13299	17.628	17.548	17.681	0	501	28	0.98941132619024	0.0181617640607624	0.98941132619024	597.321172251291	0	10.9645057740526						323	16	5	NaN	NaN	NaN	6.1801E-05	1	37945	43.904	18.671	1	60091			9428	1766	7967	8174	9428	9428		
IGVAIGDQILDLSIIK	16	Unmodified	_IGVAIGDQILDLSIIK_			0	0	0	P16930	P16930	P16930	FAH	Fumarylacetoacetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.500738	1666.98692	1.3797	0.0011514	1.4284	0.001192	2.8081	0.0023434	834.502456144983	19.481	0.044324	19.481	19.463	19.508	0	312	19	1.11600111266355	0.012003889902227	1.11600111266355	450.691597054877	0	4.84771229124806						92	6	3	NaN	NaN	NaN	0.018159	1	23558	29.131	26.652	1	19501			9429	731	7968	8175	9429	9429		
IGVDLIMK	8	Unmodified	_IGVDLIMK_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.764789	887.515025	-2.9712	-0.0013215	-0.71172	-0.00031655	-3.6829	-0.001638	444.764614526056	11.926	0.11527	11.926	11.873	11.988	1.7764E-15	783	34	0.798467866007927	0.0224890390033184	0.798467866007927	324.781163189658	0	9.14753937817557						271	14	4	NaN	NaN	NaN	0.068587	1	2119	27.736	8.249	1	107730			9430	72	7969	8176	9430	9430		
IGVGAMTWSPLACGIVSGK	19	Unmodified	_IGVGAMTWSPLACGIVSGK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.492064	1902.96957	0.77075	0.00073413	2.7511	0.0026204	3.5219	0.0033546	952.49589972335	17.051	0.16847	17.051	16.972	17.14	0	210	55	1.18386433251387	0.0358683429143114	1.18386433251387	477.608745258434	0	14.4704370115001						431	20	3	NaN	NaN	NaN	0.0013135	1	29667	33.526	25.95	1	96563			9431	1651	7970	8177	9431	9431		
IGVLDEGK	8	Unmodified	_IGVLDEGK_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.734543	829.454533	-0.74188	-0.00030842	-0.32503	-0.00013513	-1.0669	-0.00044355	415.734472136759	5.6736	0.31925	5.6736	5.6026	5.9219	0	804	34	0.78414869089473	0.0225109626091257	0.78414869089473	319.29657532861	0	9.16621216346471						642	37	4	NaN	NaN	NaN	0.0051847	1	1307	58.286	19.964	1	388110			9432	1089	7971	8178	9432	9432		
IGVPSATEIIK	11	Unmodified	_IGVPSATEIIK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.337164	1126.65977	1.1886	0.00067078	0.45297	0.00025563	1.6416	0.00092641	564.338178279805	11.11	0.31037	11.11	10.915	11.225	0	633	64	0.900343422309015	0.0426128066183624	0.900343422309015	365.033151810499	0	17.2768376176944						1117	36	4	NaN	NaN	NaN	0.0050619	1	7449	59.645	37.259	1	598690			9433	3011	7972	8179	9433	9433		
IGVVGGSDFEK	11	Unmodified	_IGVVGGSDFEK_			0	0	0	O15305	O15305	O15305	PMM2	Phosphomannomutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.287671	1106.56079	1.3319	0.00073825	1.3591	0.00075336	2.691	0.0014916	554.288421476825	7.4117	0.19506	7.4117	7.3585	7.5536	0	585	37	0.932794566565362	0.024311389219916	0.932794566565362	378.273085911666	0	9.8589170141492						327	23	3	NaN	NaN	NaN	0.00086114	1	6893	65.404	49.906	1	96025			9434	162	7973	8180	9434	9434		
IGYECLCPDGFQLVAQR	17	Unmodified	_IGYECLCPDGFQLVAQR_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.47968	2024.94482	1.6503	0.0016726	1.1275	0.0011427	2.7778	0.0028153	1013.98250987667	15.074	0.17733	15.074	15.003	15.18	0	183	55	1.20177511391933	0.035799450850682	1.20177511391933	484.62307768932	0	14.4363449117067						679	21	5	NaN	NaN	NaN	1.754E-06	1	32054	77.157	74.072	1	191810			9435	491	7974	8181	9435	9435		
IGYLNDRVDELLEK	14	Unmodified	_IGYLNDRVDELLEK_			0	0	1	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.63331	1675.8781	-1.6888	-0.00094512	1.0649	0.00059597	-0.62388	-0.00034914	559.633902433316	13.026	0.12412	13.026	12.981	13.105	0	771	34	0.806643990516186	0.0224765256052036	0.806643990516186	488.615074604528	0	13.6148900438834						342	15	5	NaN	NaN	NaN	0.00026783	1	23791	65.408	51.63	1	146530			9436	2848	7975	8182	9436	9436		
IGYSSPQTLADQSSK	15	Unmodified	_IGYSSPQTLADQSSK_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.391384	1580.76822	2.5496	0.0020178	-6.862	-0.0054305	-4.3124	-0.0034128	791.886748342395	6.9417	0.22174	6.9417	6.853	7.0747	0	405	55	1.05384839605172	0.0361508951957743	1.05384839605172	425.782861273975	0	14.6059259109191						522	26	4	NaN	NaN	NaN	9.9885E-05	1	20995	59.67	44.522	1	232940			9437	443	7976	8183	9437	9437		
IHAFVQDTTLSEPR	14	Unmodified	_IHAFVQDTTLSEPR_			0	0	0	Q8N1G2	Q8N1G2	Q8N1G2	CMTR1	Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.417736	1612.82092	2.5267	0.0020401	-1.2687	-0.0010244	1.258	0.0010157	807.41619804407	8.0059	0.070986	8.0059	7.997	8.068	0	315	22	1.11400032671325	0.0140074307741842	1.11400032671325	450.008133824009	0	5.65839850420633						97	9	3	NaN	NaN	NaN	0.00018492	1	21978	68.548	63.397	1	16090			9438	2240	7977	8184	9438	9438		
IHAYSQLLESYR	12	Unmodified	_IHAYSQLLESYR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.383165	1478.75178	1.2424	0.00091982	-0.3474	-0.00025721	0.89495	0.00066261	740.383107806802	9.4253	0.133	9.4253	9.381	9.514	0	414	25	1.04781950764076	0.0160803646300043	1.04781950764076	423.600544975736	0	6.50078679677881						317	16	4	NaN	NaN	NaN	3.4939E-07	1	17868	99.174	81.704	1	130200			9439	1790	7978	8185	9439	9439		
IHCLENVDK	9	Unmodified	_IHCLENVDK_			0	0	0	Q01082;P11277;O15020	Q01082;O15020	Q01082	SPTBN1;SPTB;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.279323	1126.54409	1.4438	0.00081469	-0.56434	-0.00031845	0.87943	0.00049625	564.278884547005	3.2351	0.17735	3.2351	3.1996	3.3769	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	352.672441968991	0	8.24935980826945						291	21	4	NaN	NaN	NaN	0.001331	1	7430	85.716	59.493	1	59863			9440	1511;137	7979	8186	9440	9440		
IHDPQLLTER	10	Unmodified	_IHDPQLLTER_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.332944	1220.65134	1.6818	0.0010281	1.1622	0.00071048	2.844	0.0017386	611.333788083129	5.8066	0.22168	5.8066	5.6913	5.913	0	573	43	0.940896116921038	0.0283436532440857	0.940896116921038	381.119461093118	0	11.4808825921668						485	26	4	NaN	NaN	NaN	0.00020549	1	10040	109.88	77.75	1	188340			9441	705	7980	8187	9441	9441		
IHDVLCK	7	Unmodified	_IHDVLCK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.736563	883.458573	-1.0118	-0.00044797	0.65041	0.00028796	-0.36142	-0.00016002	442.737243729434	3.102	0.21279	3.102	3.0577	3.2705	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	323.972100203956	0	6.6546095893184						328	25	4	NaN	NaN	NaN	0.050781	1	2054	38.322	27.494	1	70462			9442	1055	7981	8188	9442	9442		
IHEATGMPAGK	11	Unmodified	_IHEATGMPAGK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.281866	1110.54918	0.83935	0.00046692	0.067034	3.729E-05	0.90639	0.00050421	556.282167248689	2.5611	0.14194	2.5611	2.5256	2.6676	0	687	52	0.863749705078866	0.0345871250376812	0.863749705078866	350.25808318235	0	14.0253826395001						216	17	3	NaN	NaN	NaN	0.0023408	1	6998	83.358	58.104	1	36083			9443	1852	7982	8189	9443	9443		
IHEDIFDIIDR	11	Unmodified	_IHEDIFDIIDR_			0	0	0	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.356616	1384.69868	0.47948	0.00033245	-3.2666	-0.0022649	-2.7871	-0.0019325	693.354280350326	14.684	0.15962	14.684	14.622	14.781	0	501	37	0.98941132619024	0.0242173613457122	0.98941132619024	400.239733359609	0	9.79648200006301						206	19	2	NaN	NaN	NaN	0.00010906	1	14978	68.49	58.976	1	93757			9444	815	7983	8190	9444	9444		
IHEEFSEHALLR	12	Unmodified	_IHEEFSEHALLR_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.256285	1479.74703	-0.63457	-0.00031364	-4.13	-0.0020413	-4.7646	-0.0023549	494.253102831222	6.986	0.18628	6.986	6.9062	7.0925	0	753	34	0.81889964927511	0.0224577750816375	0.81889964927511	496.576936480357	0	13.6182902997653						195	22	3	NaN	NaN	NaN	0.00039736	1	17896	57.888	53.685	1	60485			9445	3343	7984	8191	9445	9445		
IHEGCEEPATHNALAK	16	Unmodified	_IHEGCEEPATHNALAK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	444.963797	1775.82608	-0.45033	-0.00020038	0.96647	0.00043004	0.51614	0.00022966	445.214740672339	2.9336	0.13301	2.9336	2.907	3.04	0	819	25	0.773912161060781	0.0163841521747742	0.773912161060781	624.759879826276	0	13.2265151767829						246	16	4	NaN	NaN	NaN	0.020226	1	26554	22.142	20.3	1	70487			9446	1503	7985	8192	9446	9446		
IHEGCEEPATHNALAK	16	Unmodified	_IHEGCEEPATHNALAK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.920317	1775.82608	3.2222	0.0028643	-2.2922	-0.0020376	0.92992	0.00082662	889.420275254826	2.9336	0.062074	2.9336	2.9158	2.9779	0	318	28	1.11199926528787	0.0180145146238793	1.11199926528787	448.848512160179	0	7.27139696816505						98	8	3	NaN	NaN	NaN	1.8675E-06	1	26556	76.563	64.545	1	18061			9447	1503	7985	8192	9447	9447		
IHEGCEEPATHNALAK	16	Unmodified	_IHEGCEEPATHNALAK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.949304	1775.82608	1.7503	0.0010378	0.5615	0.00033294	2.3118	0.0013708	593.284677271397	2.9336	0.38129	2.9336	2.907	3.2883	0	654	172	0.886123392477847	0.115969009192435	0.886123392477847	536.511250129463	0	70.2144629362824						1002	44	5	NaN	NaN	NaN	2.1431E-12	1	26557	199.51	175.7	1	389290			9448	1503	7985	8192	9448	9448		
IHEPIMLK	8	Unmodified	_IHEPIMLK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.783513	979.552473	0.89684	0.00044015	0.23992	0.00011775	1.1368	0.0005579	490.783661071212	6.1968	0.16847	6.1968	6.0993	6.2678	0	666	43	0.877991458330206	0.0284736285227984	0.877991458330206	356.616262509117	0	11.5652138611745						432	20	3	NaN	NaN	NaN	0.0031851	1	3841	72.492	47.641	1	121660			9449	1728	7986	8193	9449	9449		
IHETIETINQLK	12	Unmodified	_IHETIETINQLK_			0	0	0	Q96GM5	Q96GM5	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.898648	1437.78274	1.8011	0.0012966	0.032233	2.3205E-05	1.8333	0.0013198	719.898611613442	7.5092	0.062061	7.5092	7.4738	7.5358	0	429	28	1.03776581230406	0.0181041477634616	1.03776581230406	419.646959314623	0	7.32087188635705						154	8	3	NaN	NaN	NaN	0.0070354	1	16622	37.749	33.856	1	38992			9450	2544	7987	8194	9450	9450		
IHFFLSK	7	Unmodified	_IHFFLSK_			0	0	0	P35659	P35659	P35659	DEK	Protein DEK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.257988	890.501424	-1.1549	-0.0005154	-1.2871	-0.00057437	-2.442	-0.0010898	446.257510645011	9.0883	0.22171	9.0883	9.0174	9.2391	0	771	43	0.806643990516186	0.0286044998957902	0.806643990516186	328.090089573422	0	11.6344422612102						399	26	3	NaN	NaN	NaN	0.024352	1	2174	76.833	51.983	1	115660			9451	979	7988	8195	9451	9451		
IHFHNLQGEK	10	Unmodified	_IHFHNLQGEK_			0	0	0	Q8TC12	Q8TC12	Q8TC12	RDH11	Retinol dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	408.215761	1221.62546	-0.69559	-0.00028395	-0.5485	-0.00022391	-1.2441	-0.00050786	408.215290146627	3.3415	0.088674	3.3415	3.306	3.3947	0	876	31	0.734948245421186	0.0205344978621902	0.734948245421186	446.539215328028	0	12.4763323399494						132	11	3	NaN	NaN	NaN	0.012515	1	10071	33.426	30.324	1	23620			9452	2340	7989	8196	9452	9452		
IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGR	39	Unmodified	_IHFISPNIYCCGAGTAADTDMTTQLISSNLELHSLSTGR_			0	0	0	Q99436	Q99436	Q99436	PSMB7	Proteasome subunit beta type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1063.75815	4251.00348	0.7635	0.00081218	1.6971	0.0018053	2.4606	0.0026175	1064.26168896156	17.38	0.09754	17.38	17.344	17.442	0	309	31	1.11800162319566	0.0200037307887677	1.11800162319566	898.457886039503	0	16.0755667116184						437	12	7	NaN	NaN	NaN	4.3411E-13	1	38782	56.429	51.611	1	109950			9453	2638	7990	8197	9453	9453		
IHFPLATYAPVISAEK	16	Unmodified	_IHFPLATYAPVISAEK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.325929	1755.95596	-0.63854	-0.00037439	-0.96583	-0.00056629	-1.6044	-0.00094068	586.325482705161	14.09	0.18622	14.09	13.957	14.143	0	717	52	0.84338031290707	0.0346303797525405	0.84338031290707	510.676794088542	0	20.9691061546569						417	22	2	NaN	NaN	NaN	0.024397	1	26057	54.27	54.082	1	121750			9454	1447;2696;1448	7991	8198	9454	9454		
IHFPLATYAPVISAEK	16	Unmodified	_IHFPLATYAPVISAEK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.325929	1755.95596	1.2369	0.00072524	-0.37856	-0.00022196	0.85837	0.00050328	586.325698201192	14.178	0.49648	14.178	13.974	14.471	0	594	172	0.926715457081489	0.115808181489724	0.926715457081489	561.137210856802	0	70.1232287202778						1666	57	2	NaN	NaN	NaN	8.1937E-05	1	26058	115.04	112.74	1	3612200			9455	1447;2696;1448	7991	8198	9455	9455		
IHFPLATYAPVISAEK	16	Unmodified	_IHFPLATYAPVISAEK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.985255	1755.95596	3.0827	0.0027097	0.96104	0.00084474	4.0437	0.0035544	879.487899146321	14.187	0.81574	14.187	13.779	14.595	0	270	91	1.14398322290989	0.0599204828847315	1.14398322290989	461.799017364653	0	24.1884842032898						3960	93	5	NaN	NaN	NaN	2.4538E-06	1	26059	123.92	119.39	1	6665000			9456	1447;2696;1448	7991	8198	9456	9456		
IHGALLILNELVR	13	Unmodified	_IHGALLILNELVR_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.636438	1459.88748	-3.4132	-0.0016644	2.4978	0.001218	-0.91542	-0.00044639	487.637594100093	16.777	0.070947	16.777	16.741	16.812	0	804	13	0.78414869089473	0.00818637343396067	0.78414869089473	475.563930584822	0	4.96480319701527						48	9	2	NaN	NaN	NaN	0.0024304	1	17272	50.834	40.746	1	8030.7			9457	1049	7992	8199	9457	9457		
IHGTEEGQQILK	12	Unmodified	_IHGTEEGQQILK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.862066	1351.70958	2.4366	0.0016493	-2.651	-0.0017944	-0.21435	-0.00014508	676.860181116794	4.4145	0.1064	4.4145	4.3879	4.4943	0	507	73	0.985374541851584	0.0484548443098887	0.985374541851584	398.702918995858	0	19.6058321433195						352	13	3	NaN	NaN	NaN	0.005627	1	13942	64.064	51.469	1	73833			9458	1782	7993	8200	9458	9458		
IHHDVNELLSLLR	13	Unmodified	_IHHDVNELLSLLR_			0	0	0	Q9BSJ2	Q9BSJ2	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.294852	1557.86273	-1.326	-0.0006899	-0.86429	-0.00044968	-2.1903	-0.0011396	520.29422896988	14.515	0.062065	14.515	14.489	14.551	0	771	22	0.806643990516186	0.0143032423211241	0.806643990516186	488.918139633863	0	8.6693940680093						92	8	2	NaN	NaN	NaN	0.0018788	1	20304	29.317	25.071	1	21497			9459	2725	7994	8201	9459	9459		
IHIFAQQNDQFQK	13	Unmodified	_IHIFAQQNDQFQK_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.61084	1615.81069	-0.86937	-0.00046912	-0.15234	-8.2203E-05	-1.0217	-0.00055133	539.610930088816	7.4649	0.10638	7.4649	7.4294	7.5358	0	813	25	0.778007628350577	0.0163795890035051	0.778007628350577	471.41241199193	0	9.92476330334824						201	13	4	NaN	NaN	NaN	0.0011931	1	22081	69.915	63.651	1	56660			9460	2035	7995	8202	9460	9460		
IHLAQSLHK	9	Unmodified	_IHLAQSLHK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.808908	1045.60326	1.5968	0.00083642	1.0949	0.00057353	2.6917	0.00141	523.809475610313	3.2173	0.13302	3.2173	3.1818	3.3149	0	654	25	0.886123392477847	0.0162593562180621	0.886123392477847	359.604262082597	0	6.59832913154975						142	16	3	NaN	NaN	NaN	5.9211E-05	1	5384	122.44	38.067	1	31457			9461	1264	7996	8203	9461	9461		
IHLDDANESDHFENIQSTNWQTMR	24	Unmodified	_IHLDDANESDHFENIQSTNWQTMR_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	726.076872	2900.27838	-0.12724	-9.2385E-05	0.22234	0.00016143	0.095097	6.9048E-05	726.328017662212	11.225	0.053203	11.225	11.208	11.261	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	709.924161584038	0	13.0899712560873						144	7	5	NaN	NaN	NaN	0.0024441	1	38075	51.128	50.032	1	27406			9462	1108	7997	8204	9462	9462		
IHLDDANESDHFENIQSTNWQTMR	24	Unmodified	_IHLDDANESDHFENIQSTNWQTMR_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	726.076872	2900.27838	1.0931	0.00079367	2.4094	0.0017494	3.5025	0.0025431	726.329521107458	11.225	0.10642	11.225	11.19	11.296	0	495	37	0.993446994398923	0.0242173613457122	0.993446994398923	799.575567010056	0	19.4913372717997						313	13	5	NaN	NaN	NaN	2.5649E-06	1	38076	69.369	65.319	1	89957			9463	1108	7997	8204	9463	9463		
IHLYVEK	7	Unmodified	_IHLYVEK_			0	0	0		REV__Q6NSI4	REV__Q6NSI4			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.260728	900.506903	0.12642	5.7047E-05	-0.83686	-0.00037764	-0.71045	-0.0003206	451.260381669985	6.0283	0.12414	6.0283	5.9929	6.117	0	747	40	0.822982596624503	0.0265410084545386	0.822982596624503	334.679095145664	0	10.7933275020045						235	15	3	NaN	NaN	NaN	0.013723	1	2338	58.687	9.2803	1	64638	+		9464	3497	7998	8205	9464	9464		
IHMGSCAENTAK	12	Unmodified	_IHMGSCAENTAK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.797554	1317.58056	2.3837	0.0015728	-1.8747	-0.0012369	0.50899	0.00033583	659.796658351897	2.4281	0.13303	2.4281	2.4104	2.5434	0	573	22	0.940896116921038	0.014172805463205	0.940896116921038	380.805824578967	0	5.73611344966997						103	16	2	NaN	NaN	NaN	0.0025869	1	12899	60	51.023	1	20507			9465	832	7999	8206	9465	9465		
IHMGSCAENTAK	12	Unmodified	_IHMGSCAENTAK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.200795	1317.58056	-0.79548	-0.00035017	1.6375	0.00072082	0.842	0.00037065	440.201702031531	2.4281	0.1419	2.4281	2.4104	2.5523	0	834	28	0.763668499782291	0.0184462999547469	0.763668499782291	463.611909097652	0	11.1984772715467						210	17	3	NaN	NaN	NaN	0.0030143	1	12900	90.263	81.789	1	43444			9466	832	7999	8206	9466	9466		
IHMVYSK	7	Unmodified	_IHMVYSK_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.233656	876.452759	-1.4369	-0.00063112	2.7785	0.0012204	1.3417	0.0005893	439.235115480252	3.3326	0.2129	3.3326	3.2883	3.5012	0	771	22	0.806643990516186	0.0143012525920645	0.806643990516186	328.169895706281	0	5.81823038017512						163	25	3	NaN	NaN	NaN	0.067986	1	1961	30.562	18.913	1	33882			9467	586	8000	8207	9467	9467		
IHNAENIQPGEQK	13	Unmodified	_IHNAENIQPGEQK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.251311	1476.73211	-0.090289	-4.4535E-05	-1.3303	-0.00065615	-1.4205	-0.00070068	493.250621572253	2.6587	0.22171	2.6587	2.6055	2.8272	0	795	40	0.790287188799094	0.0265927576463694	0.790287188799094	479.235513434932	0	16.1260286702539						412	26	4	NaN	NaN	NaN	0.015697	1	17796	40.533	37.448	1	102200			9468	1544	8001	8208	9468	9468		
IHNFGLIQEK	10	Unmodified	_IHNFGLIQEK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.83258	1197.65061	0.90822	0.00054478	-0.30875	-0.0001852	0.59947	0.00035958	599.832473395805	7.1102	0.16838	7.1102	7.066	7.2343	0	567	40	0.944945209309785	0.0263172834355764	0.944945209309785	382.841770242635	0	10.6623699228155						355	20	4	NaN	NaN	NaN	4.7281E-10	1	9400	158.37	120.04	1	106610			9469	1145	8002	8209	9469	9469		
IHNHLPEIQK	10	Unmodified	_IHNHLPEIQK_			0	0	0	Q15070	Q15070	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.231412	1227.67241	-0.60455	-0.00024801	0.49206	0.00020186	-0.1125	-4.615E-05	410.231601547921	3.7406	0.22166	3.7406	3.581	3.8026	0	849	22	0.753417699604308	0.014355121376784	0.753417699604308	457.735714842746	0	8.72139285884521						208	26	2	NaN	NaN	NaN	0.0291	1	10239	43.734	28.152	1	52246			9470	1809	8003	8210	9470	9470		
IHPVSTMVK	9	Unmodified	_IHPVSTMVK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.28642	1010.55829	2.7104	0.0013722	0.2239	0.00011336	2.9343	0.0014856	506.286887964857	3.8381	0.1418	3.8381	3.7938	3.9356	0	648	70	0.890187667287968	0.0467489185104288	0.890187667287968	361.41639392181	0	18.9800714710622						890	17	5	NaN	NaN	NaN	0.0012821	1	4529	91.783	47.016	1	1341000			9471	553	8004	8211	9471	9471		
IHQIEYAMEAVK	12	Unmodified	_IHQIEYAMEAVK_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.368669	1430.72279	2.4651	0.001766	1.4587	0.0010449	3.9238	0.0028109	716.369889305412	8.2454	0.31046	8.2454	8.0947	8.4051	0	453	190	1.02166545906632	0.126485062295611	1.02166545906632	413.155793028472	0	51.1498512113316						1062	36	3	NaN	NaN	NaN	0.0089738	1	16420	58.313	17.927	1	571110			9472	841	8005	8212	9472	9472		
IHSDLAEER	9	Unmodified	_IHSDLAEER_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.26727	1068.51999	1.6152	0.00086455	-0.26713	-0.00014299	1.3481	0.00072157	535.267246970306	2.703	0.12411	2.703	2.6676	2.7917	0	687	19	0.863749705078866	0.0122131503988969	0.863749705078866	350.426912880686	0	4.95492683316422						118	15	2	NaN	NaN	NaN	0.027889	1	5917	54.436	37.041	1	22597			9473	1722	8006	8213	9473	9473		
IHTEPQLSAALEYVR	15	Unmodified	_IHTEPQLSAALEYVR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.308938	1725.90498	-0.47095	-0.00027142	0.97553	0.00056221	0.50458	0.00029079	576.309572916552	11.961	0.15074	11.961	11.926	12.077	0	600	43	0.922661313351899	0.0283908138186021	0.922661313351899	558.758480770844	0	17.1933165155691						255	18	3	NaN	NaN	NaN	0.018424	1	25215	57.003	54.702	1	76568			9474	1101	8007	8214	9474	9474		
IHTEPQLSAALEYVR	15	Unmodified	_IHTEPQLSAALEYVR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.959768	1725.90498	1.5212	0.0013142	-0.22301	-0.00019267	1.2982	0.0011216	864.460691044378	11.997	0.20402	11.997	11.926	12.13	0	309	34	1.11800162319566	0.0220025900053455	1.11800162319566	451.372414815254	0	8.88313753473386						404	24	3	NaN	NaN	NaN	0.0021161	1	25216	42.446	38.71	1	149670			9475	1101	8007	8214	9475	9475		
IHTLELK	7	Unmodified	_IHTLELK_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.260728	852.506903	-0.1724	-7.366E-05	1.2707	0.00054293	1.0983	0.00046927	427.261116390913	4.645	0.13301	4.645	4.6007	4.7337	0	735	28	0.831145085810763	0.0183617725733707	0.831145085810763	338.284153604666	0	7.47342046497806						140	16	2	NaN	NaN	NaN	0.0068453	1	1604	63.301	35.597	1	35881			9476	2237	8008	8215	9476	9476		
IHVFYIDYGNR	11	Unmodified	_IHVFYIDYGNR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.238455	1395.69353	-1.526	-0.00071149	-0.7817	-0.00036446	-2.3077	-0.001076	466.238089149784	11.119	0.062054	11.119	11.083	11.146	0	813	31	0.778007628350577	0.0204744871478547	0.778007628350577	472.042962875398	0	12.4225486029201						123	8	3	NaN	NaN	NaN	0.01057	1	15316	53.878	49.985	1	24195			9477	2108	8009	8216	9477	9477		
IHVFYIDYGNR	11	Unmodified	_IHVFYIDYGNR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.854044	1395.69353	1.6362	0.0011435	-2.2729	-0.0015884	-0.63671	-0.00044497	698.854496429209	11.11	0.17733	11.11	11.048	11.225	0	462	49	1.01562323939346	0.0322452204768515	1.01562323939346	410.811055071743	0	13.0429203776662						496	21	4	NaN	NaN	NaN	0.00088061	1	15317	65.404	55.316	1	148930			9478	2108	8009	8216	9478	9478		
IHVIDHSGAR	10	Unmodified	_IHVIDHSGAR_			0	0	0	Q99426	Q99426	Q99426	TBCB	Tubulin-folding cofactor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	368.868473	1103.58359	-0.17968	-6.6278E-05	0.20956	7.7301E-05	0.029883	1.1023E-05	368.868613495283	2.1976	0.079826	2.1976	2.1798	2.2597	0	864	19	0.743159753061487	0.01231382719818	0.743159753061487	452.066587019236	0	7.49054266151217						71	10	2	NaN	NaN	NaN	0.01946	1	6819	45.489	32.662	1	13982			9479	2637	8010	8217	9479	9479		
IHVLPIDDTVEGITGNLFEVYLK	23	Unmodified	_IHVLPIDDTVEGITGNLFEVYLK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	862.466895	2584.37886	0.83809	0.00072283	-0.69329	-0.00059794	0.1448	0.00012489	862.800664388242	20.013	0.017737	20.013	20.013	20.031	0	492	82	0.995464410099171	0.0544702712697026	0.995464410099171	601.250924627854	0	32.899519694909						217	3	5	NaN	NaN	NaN	3.8671E-13	1	37177	115.24	112.49	1	59033			9480	1265	8011	8218	9480	9480		
IHVSDQELQSANASVDDSR	19	Unmodified	_IHVSDQELQSANASVDDSR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.98797	2069.96139	2.5323	0.0026235	-1.4316	-0.0014831	1.1008	0.0011404	1035.98623585554	6.8885	0.079807	6.8885	6.8707	6.9505	0	225	58	1.17390432875292	0.0378584295495608	1.17390432875292	473.313915992076	0	15.2643798174325						303	10	3	NaN	NaN	NaN	0.0011764	1	32877	48.892	45.987	1	69042			9481	804	8012	8219	9481	9481		
IHVSDQELQSANASVDDSR	19	Unmodified	_IHVSDQELQSANASVDDSR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.994406	2069.96139	0.97203	0.00067167	1.3672	0.00094473	2.3392	0.0016164	691.329949321521	6.8974	0.14187	6.8974	6.8619	7.0037	0	639	58	0.896281965493857	0.0385865321490887	0.896281965493857	542.06463047504	0	23.3368460997472						543	17	5	NaN	NaN	NaN	7.6928E-11	1	32878	188.19	166.83	1	150090			9482	804	8012	8219	9482	9482		
IHVSDQELQSANASVDDSRLEELK	24	Unmodified	_IHVSDQELQSANASVDDSRLEELK_			0	0	1	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	895.110499	2682.30967	2.651	0.0023729	0.01755	1.5709E-05	2.6685	0.0023886	895.444629279561	10.117	0.17734	10.117	10.064	10.241	0	297	40	1.12600091227925	0.0259923277309138	1.12600091227925	679.960873510359	0	15.6960493333033						390	21	5	NaN	NaN	NaN	0.0011653	1	37556	38.616	38.558	1	106520			9483	804	8013	8220	9483	9483		
IHVSDQELQSANASVDDSRLEELK	24	Unmodified	_IHVSDQELQSANASVDDSRLEELK_			0	0	1	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	671.584693	2682.30967	1.7553	0.0011788	1.1858	0.00079638	2.9411	0.0019752	671.836370126355	10.117	0.27487	10.117	10.019	10.294	0	507	73	0.985374541851584	0.0484883664800192	0.985374541851584	793.385779084935	0	39.0409725260592						1171	32	6	NaN	NaN	NaN	2.1632E-09	1	37557	99.127	91.991	1	491830			9484	804	8013	8220	9484	9484		
IHWWENVYGFDMSCIK	16	Unmodified	_IHWWENVYGFDMSCIK_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.650089	2083.92844	-0.61698	-0.0004292	0.85453	0.00059446	0.23756	0.00016526	695.985049811811	16.714	0.070954	16.714	16.688	16.759	0	573	22	0.940896116921038	0.0141747684454057	0.940896116921038	569.021547717343	0	8.57241148548235						148	9	4	NaN	NaN	NaN	0.024623	1	33074	31.801	30.858	1	28292			9485	2681	8014	8221	9485	9485		
IHYIGQNEPELLVAHAYTR	19	Unmodified	_IHYIGQNEPELLVAHAYTR_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	556.793189	2223.14365	0.94769	0.00052767	-0.15744	-8.7662E-05	0.79025	0.00044	557.044143193932	10.933	0.19509	10.933	10.844	11.039	0	642	40	0.894250814548268	0.0264049676271125	0.894250814548268	720.78204617278	0	21.2828730885868						540	23	5	NaN	NaN	NaN	0.00010872	1	34926	66.619	66.619	1	193890			9486	910	8015	8222	9486	9486		
IHYIGQNEPELLVAHAYTR	19	Unmodified	_IHYIGQNEPELLVAHAYTR_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	742.05516	2223.14365	1.9202	0.0014249	1.5547	0.0011537	3.4749	0.0025786	742.390883627949	10.933	0.23056	10.933	10.8	11.03	0	441	76	1.02971785871157	0.0502893319238733	1.02971785871157	622.479910821801	0	30.4006564384828						656	27	4	NaN	NaN	NaN	0.017538	1	34927	41.284	32.916	1	183810			9487	910	8015	8222	9487	9487		
IHYLDTTTLIEPAPR	15	Unmodified	_IHYLDTTTLIEPAPR_			0	0	0	P46109	P46109	P46109	CRKL	Crk-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.649071	1738.92539	0.27753	0.00016115	0.12732	7.3926E-05	0.40484	0.00023507	580.98349537457	11.341	0.079857	11.341	11.287	11.367	0	624	40	0.906433495720521	0.026386663985959	0.906433495720521	548.8982983894	0	15.9786625609559						174	10	2	NaN	NaN	NaN	0.06968	1	25575	26.579	20.88	1	39847			9488	1079	8016	8223	9488	9488		
IIAATFLFK	9	Unmodified	_IIAATFLFK_			0	0	0	Q13907	Q13907	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.315503	1022.61645	-0.55421	-0.00028393	-1.8405	-0.00094293	-2.3947	-0.0012269	512.31441682982	15.313	0.17734	15.313	15.251	15.429	0	696	52	0.857641857947968	0.0346063393446338	0.857641857947968	348.147635787302	0	14.0479561654257						416	21	3	NaN	NaN	NaN	0.015552	1	4818	43.734	17.511	1	145320			9489	1710	8017	8224	9489	9489		
IIAEGANGPTTPEADK	16	Unmodified	_IIAEGANGPTTPEADK_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.399209	1582.78387	2.6689	0.0021148	-1.7196	-0.0013626	0.94936	0.00075227	792.397902131322	5.1859	0.1508	5.1859	5.1327	5.2835	0	432	43	1.035754240522	0.0281639553291928	1.035754240522	418.467692965283	0	11.3788628134845						405	18	4	NaN	NaN	NaN	1.3432E-08	1	21054	113.86	96.871	1	115470			9490	472	8018	8225	9490	9490		
IIAEGANGPTTPEADK	16	Unmodified	_IIAEGANGPTTPEADK_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.399209	1582.78387	2.456	0.0019461	-0.71147	-0.00056377	1.7445	0.0013824	792.39835929968	5.177	0.079796	5.177	5.1504	5.2302	0	381	34	1.06991323971056	0.0220815471089169	1.06991323971056	432.268682722695	0	8.92143486684284						156	10	3	NaN	NaN	NaN	2.9931E-06	1	21055	85.081	71.906	1	30694			9491	472	8018	8225	9491	9491		
IIAFVGSPVEDNEK	14	Unmodified	_IIAFVGSPVEDNEK_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.395938	1516.77732	1.8976	0.0014411	0.65743	0.00049925	2.5551	0.0019403	759.397218857943	11.208	0.19507	11.208	11.128	11.323	0	423	67	1.04178812298108	0.0442149235181339	1.04178812298108	421.064340574161	0	17.8705508385204						768	23	4	NaN	NaN	NaN	8.5309E-06	1	19034	122.51	102.33	1	224210			9492	1262	8019	8226	9492	9492		
IIAHAQLLEQHR	12	Unmodified	_IIAHAQLLEQHR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.94052	1427.79973	-0.19109	-9.1137E-05	0.43119	0.00020565	0.2401	0.00011451	476.940995080878	4.9287	0.11527	4.9287	4.9021	5.0174	0	765	28	0.810730346695089	0.018384767783428	0.810730346695089	491.788540018248	0	11.1521890646422						219	14	4	NaN	NaN	NaN	0.00017827	1	16334	101.82	93.816	1	68264			9493	867	8020	8227	9493	9493		
IIAHAQLLEQHR	12	Unmodified	_IIAHAQLLEQHR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.907142	1427.79973	2.584	0.0018473	-1.2305	-0.00087967	1.3536	0.00096767	715.408253695304	4.9287	0.044323	4.9287	4.911	4.9553	0	417	22	1.04580932352505	0.0140712896137907	1.04580932352505	422.927737892761	0	5.69046245020576						71	6	2	NaN	NaN	NaN	0.0014414	1	16336	50.297	43.606	1	14701			9494	867	8020	8227	9494	9494		
IIAHFLIQQYLK	12	Unmodified	_IIAHFLIQQYLK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.297533	1485.87077	-1.2191	-0.00060503	-1.0857	-0.00053882	-2.3048	-0.0011439	496.296911797286	14.329	0.11527	14.329	14.294	14.409	0	759	40	0.814815566123307	0.0265410084545386	0.814815566123307	494.081512189057	0	16.0937298419952						250	14	3	NaN	NaN	NaN	0.00013344	1	18112	93.467	90.122	1	58280			9495	1076	8021	8228	9495	9495		
IIAHFLIQQYLK	12	Unmodified	_IIAHFLIQQYLK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.297533	1485.87077	-2.4758	-0.0012287	0.33631	0.00016691	-2.1395	-0.0010618	496.298069696044	14.329	0.053193	14.329	14.311	14.365	0	798	13	0.788241307691771	0.00818409423019217	0.788241307691771	477.967614209276	0	4.96260720606449						40	7	2	NaN	NaN	NaN	0.0025343	1	18113	65.156	63.653	1	7378.3			9496	1076	8021	8228	9496	9496		
IIAINSELTQPK	12	Unmodified	_IIAINSELTQPK_			0	0	0	Q8WVX9	Q8WVX9	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.88501	1325.75547	1.3582	0.00090171	0.28434	0.00018877	1.6426	0.0010905	663.88540758163	9.9218	0.1152	9.9218	9.8776	9.9928	0	462	34	1.01562323939346	0.022160929987054	1.01562323939346	411.023575401788	0	8.96854692193477						234	14	3	NaN	NaN	NaN	0.00063853	1	13170	66.664	54.597	1	76505			9497	2383	8022	8229	9497	9497		
IIALDGDTK	9	Unmodified	_IIALDGDTK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.266207	944.517862	-0.69256	-0.00032777	0.35936	0.00017007	-0.3332	-0.00015769	473.266575210338	6.3033	0.10643	6.3033	6.2589	6.3653	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	336.932754704683	0	9.12134608846424						176	13	2	NaN	NaN	NaN	0.0047803	1	3152	69.905	46.595	1	55501			9498	888	8023	8230	9498	9498		
IIALDGDTK	9	Unmodified	_IIALDGDTK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.266207	944.517862	0.42577	0.0002015	1.6477	0.00077981	2.0735	0.00098132	473.267200728764	6.4363	0.43447	6.4363	6.3565	6.7909	0	723	82	0.839303037468863	0.0550470913374713	0.839303037468863	341.077085593102	0	22.3701102528877						1599	50	4	NaN	NaN	NaN	0.0016755	1	3154	60.589	37.28	1	2041300			9499	888	8023	8230	9499	9499		
IIANALSSEPACLAEIEEDK	20	Unmodified	_IIANALSSEPACLAEIEEDK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1087.03828	2172.06201	1.0937	0.0011889	-0.72904	-0.0007925	0.36463	0.00039636	1087.53933252112	14.373	0.21279	14.373	14.267	14.48	0	81	100	1.2692388538616	0.0654122304904885	1.2692388538616	511.592119396918	0	26.3657084947367						1152	25	4	NaN	NaN	NaN	4.2362E-22	1	34340	184.37	178.17	1	415720			9500	1465	8024	8231	9500	9500		
IIAPPER	7	Unmodified	_IIAPPER_			0	0	0	P60709;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	398.239796	794.465038	-0.60014	-0.000239	0.11345	4.518E-05	-0.48669	-0.00019382	398.23998780612	4.2904	0.23055	4.2904	4.2371	4.4677	0	828	55	0.767766820543916	0.0368746254477655	0.767766820543916	312.849792522282	0	15.0256804696218						848	27	4	NaN	NaN	NaN	0.0030127	1	947	100.67	43.78	1	531520			9501	1310;1436;1444;1955	8025	8232	9501	9501		
IIAVSFPAGCSEESYLHNLQEVTR	24	Unmodified	_IIAVSFPAGCSEESYLHNLQEVTR_			0	0	0	Q68CZ2	Q68CZ2	Q68CZ2	TNS3	Tensin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	907.449798	2719.32757	1.2931	0.0011734	0.35628	0.00032331	1.6494	0.0014967	908.452777965239	15.748	0.12414	15.748	15.659	15.783	0	315	28	1.11400032671325	0.0180095545352803	1.11400032671325	672.666827931573	0	10.8747094872497						235	15	5	NaN	NaN	NaN	9.2734E-05	1	37661	45.587	44.889	1	49119			9502	2022	8026	8233	9502	9502		
IICDLVEEK	9	Unmodified	_IICDLVEEK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.791732	1117.56891	1.1966	0.00066987	-0.41025	-0.00022965	0.7864	0.00044022	559.791570519229	8.0502	0.12429	8.0502	7.997	8.1213	0	609	22	0.916577990479294	0.0141963881924577	0.916577990479294	371.651799073572	0	5.75631672032051						143	15	2	NaN	NaN	NaN	0.0082877	1	7202	67.507	41.051	1	68885			9503	54	8027	8234	9503	9503		
IICQGFTGK	9	Unmodified	_IICQGFTGK_			0	0	0	P53597	P53597	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.268227	1022.5219	0.17468	8.9483E-05	0.42816	0.00021933	0.60284	0.00030881	512.268530794238	5.2657	0.12416	5.2657	5.2213	5.3455	0	699	37	0.85560534332665	0.0244398769037869	0.85560534332665	347.321357378266	0	9.92103577494873						268	15	4	NaN	NaN	NaN	0.010244	1	4796	51.864	36.366	1	120640			9504	1237	8028	8235	9504	9504		
IICSAGLSLLAEER	14	Unmodified	_IICSAGLSLLAEER_			0	0	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.411066	1530.80758	1.7939	0.0013749	1.0401	0.00079711	2.834	0.002172	766.41181119924	13.637	0.079797	13.637	13.602	13.682	0	306	58	1.12000185836644	0.0380201832976437	1.12000185836644	452.638825999442	0	15.3655201583589						289	10	3	NaN	NaN	NaN	0.0014798	1	19473	50.116	38.634	1	61236			9505	2760	8029	8236	9505	9505		
IIDDSEITK	9	Unmodified	_IIDDSEITK_			0	0	0	P61326;Q96A72	P61326	P61326	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.274229	1032.53391	0.98971	0.00051195	-1.1815	-0.00061116	-0.1918	-9.9214E-05	517.273727413167	5.5937	0.25722	5.5937	5.5228	5.78	0	717	52	0.84338031290707	0.0346400029303776	0.84338031290707	342.314686439934	0	14.0598275296678						502	30	3	NaN	NaN	NaN	0.0065529	1	5064	72.038	41.477	1	262570			9506	1342	8030	8237	9506	9506		
IIDEDGLLNLIR	12	Unmodified	_IIDEDGLLNLIR_			0	0	0	P35251	P35251	P35251	RFC1	Replication factor C subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.395741	1382.77693	0.3614	0.00025023	-1.0804	-0.00074809	-0.71903	-0.00049785	692.394589379734	17.858	0.11528	17.858	17.823	17.938	0	495	40	0.993446994398923	0.0262300352853753	0.993446994398923	401.877767214163	0	10.6108006505302						249	14	3	NaN	NaN	NaN	0.00053106	1	14924	64.064	49.302	1	85562			9507	966	8031	8238	9507	9507		
IIDETMAQLQDLK	13	Unmodified	_IIDETMAQLQDLK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.397624	1516.78069	2.8166	0.0021389	-3.618	-0.0027475	-0.80134	-0.00060854	759.896275924131	12.884	0.15962	12.884	12.813	12.972	0	420	40	1.04379886199097	0.0261323987291064	1.04379886199097	421.877038145898	0	10.5620530706983						381	19	5	NaN	NaN	NaN	3.1204E-11	1	19032	183.08	123.08	1	158920			9508	1764	8032	8239	9508	9508		
IIDFLSALEGFK	12	Unmodified	_IIDFLSALEGFK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.876653	1351.73875	0.43468	0.00029423	-1.5367	-0.0010402	-1.102	-0.00074595	676.875577643729	20.04	0.03547	20.04	20.031	20.066	0	510	79	0.983355730988811	0.0524347274521711	0.983355730988811	397.885974949943	0	21.2161702993919						197	5	3	NaN	NaN	NaN	0.00060384	1	13945	60.547	46.092	1	81325			9509	1218	8033	8240	9509	9509		
IIDGLLVMR	9	Unmodified	_IIDGLLVMR_			0	0	0	O43447	O43447	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.309895	1028.60524	0.31583	0.00016275	-2.472	-0.0012739	-2.1562	-0.0011111	515.308824072096	13.788	0.19504	13.788	13.735	13.93	0	684	85	0.86578508874114	0.0569314919116681	0.86578508874114	351.426092981886	0	23.1087506938218						737	23	4	NaN	NaN	NaN	6.2485E-06	1	4967	93.561	42.131	1	279950			9510	203	8034	8241	9510	9510		
IIDINYYPVPEACLSNK	17	Unmodified	_IIDINYYPVPEACLSNK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.00606	2007.99756	1.5946	0.0016026	-2.2236	-0.0022347	-0.62897	-0.00063212	1005.50577388686	14.631	0.16847	14.631	14.568	14.737	0	156	64	1.21966378336455	0.0417402463881038	1.21966378336455	491.86506739598	0	16.8329742858923						1024	20	5	NaN	NaN	NaN	0.0014607	1	31776	67.887	64.599	1	277860			9511	828	8035	8242	9511	9511		
IIDISDVFR	9	Unmodified	_IIDISDVFR_			0	0	0	Q6PI48	Q6PI48	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.300581	1076.58661	-0.39465	-0.00021283	-1.6947	-0.00091396	-2.0894	-0.0011268	539.299599703529	15.89	0.21282	15.89	15.801	16.014	0	675	73	0.871889544407995	0.0487848675344291	0.871889544407995	353.695554755286	0	19.7903402981727						710	25	3	NaN	NaN	NaN	0.00010411	1	6131	109.36	85.782	1	227610			9512	2073	8036	8243	9512	9512		
IIDPLPPIDHSEIDYPPFEK	20	Unmodified	_IIDPLPPIDHSEIDYPPFEK_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.066731	2334.17836	-0.069302	-5.3991E-05	-0.77287	-0.00060211	-0.84217	-0.0006561	779.400597047001	15.872	0.25719	15.872	15.73	15.987	0	612	40	0.914549654013882	0.0263756909350701	0.914549654013882	552.695783447895	0	15.9397940848348						689	30	3	NaN	NaN	NaN	0.00083082	1	35931	24.471	19.637	1	142590			9513	2189	8037	8244	9513	9513		
IIDSGPQLSGSLDYNVVHSLYNK	23	Unmodified	_IIDSGPQLSGSLDYNVVHSLYNK_			0	0	0	Q658Y4	Q658Y4	Q658Y4	FAM91A1	Protein FAM91A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	840.430732	2518.27037	1.5531	0.0013053	-1.2457	-0.0010469	0.3074	0.00025835	840.763992396878	14.409	0.07981	14.409	14.373	14.453	1.7764E-15	384	28	1.06790610341098	0.0180667195029678	1.06790610341098	645.095577660193	0	10.9136569375954						173	10	3	NaN	NaN	NaN	0.00056152	1	36913	21.21	20.038	1	47894			9514	2018	8038	8245	9514	9514		
IIDSLFNTVTDK	12	Unmodified	_IIDSLFNTVTDK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.36665	1364.71875	1.6352	0.0011174	-2.9818	-0.0020377	-1.3466	-0.00092024	683.364327496587	13.549	0.21276	13.549	13.496	13.708	0	489	37	0.997481546940468	0.0242039733351906	0.997481546940468	403.562720050891	0	9.79248322452594						514	25	4	NaN	NaN	NaN	0.00061991	1	14347	90.142	60.833	1	238980			9515	275	8039	8246	9515	9515		
IIDTSLTRDPLVIELGQK	18	Unmodified	_IIDTSLTRDPLVIELGQK_			0	0	1	Q9NYL4	Q9NYL4	Q9NYL4	FKBP11	Peptidyl-prolyl cis-trans isomerase FKBP11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.052645	2010.13611	-0.12617	-8.467E-05	-0.48537	-0.00032571	-0.61154	-0.00041038	671.386472386246	14.613	0.097539	14.613	14.568	14.666	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	545.857000197113	0	9.8245765934638						215	12	4	NaN	NaN	NaN	7.4134E-07	1	31811	63.947	51.776	1	49603			9516	3118	8040	8247	9516	9516		
IIDVVQDHYVDWEQDMER	18	Unmodified	_IIDVVQDHYVDWEQDMER_			0	0	0	Q8NC56	Q8NC56	Q8NC56	LEMD2	LEM domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.019675	2289.0372	0.84543	0.00064592	-1.1371	-0.00086874	-0.29163	-0.00022281	764.353524008631	13.921	0.07093	13.921	13.886	13.957	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	552.760242186735	0	9.80820709374677						188	9	4	NaN	NaN	NaN	0.0015046	1	35551	43.518	43.438	1	44560			9517	2297	8041	8248	9517	9517		
IIDVVYNASNNELVR	15	Unmodified	_IIDVVYNASNNELVR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.957226	1717.8999	2.4512	0.0021079	-2.9559	-0.002542	-0.50474	-0.00043406	859.955200297867	12.254	0.10642	12.254	12.21	12.316	0	351	34	1.08996939197032	0.0220420155259144	1.08996939197032	440.071268646689	0	8.89938543914946						190	13	3	NaN	NaN	NaN	4.1316E-08	1	24997	137.39	122.24	1	79263			9518	1370	8042	8249	9518	9518		
IIDVVYNASNNELVR	15	Unmodified	_IIDVVYNASNNELVR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.640576	1717.8999	0.14226	8.1607E-05	-0.30271	-0.00017365	-0.16045	-9.2039E-05	573.640942347146	12.245	0.13303	12.245	12.21	12.343	0	642	49	0.894250814548268	0.0324826533406289	0.894250814548268	541.57333111934	0	19.6720410952778						413	16	3	NaN	NaN	NaN	9.1948E-05	1	24998	134.2	127.45	1	103900			9519	1370	8042	8249	9519	9519		
IIDVVYNASNNELVR	15	Unmodified	_IIDVVYNASNNELVR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.957226	1717.8999	2.631	0.0022626	1.0698	0.00091997	3.7008	0.0031826	859.95869805298	12.254	0.28374	12.254	12.192	12.476	0	243	103	1.16194328902838	0.0678725522609391	1.16194328902838	469.13045868062	0	27.4033008965733						1881	33	6	NaN	NaN	NaN	1.5453E-17	1	25001	187.51	153.32	1	1682400			9520	1370	8042	8249	9520	9520		
IIEDCSNSEDTIK	13	Unmodified	_IIEDCSNSEDTIK_			0	0	0	O00507	O00507	O00507	USP9Y	Probable ubiquitin carboxyl-terminal hydrolase FAF-Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.348328	1522.6821	2.3976	0.0018278	-2.1075	-0.0016067	0.29013	0.00022118	762.848570236927	4.1662	0.10639	4.1662	4.113	4.2194	0	456	34	1.01965166402748	0.0221548084259287	1.01965166402748	412.102902815515	0	8.95409793927502						157	13	3	NaN	NaN	NaN	0.0039086	1	19193	44.598	0	1	25756			9521	88	8043	8250	9521	9521		
IIELPFQNK	9	Unmodified	_IIELPFQNK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.318774	1100.623	0.01724	9.5046E-06	-1.9241	-0.0010608	-1.9069	-0.0010513	551.318052510268	12.618	0.3015	12.618	12.485	12.786	0	675	79	0.871889544407995	0.0528502795225491	0.871889544407995	353.597952106661	0	21.4336216408315						1171	35	4	NaN	NaN	NaN	0.0015195	1	6746	82.716	46.147	1	515010			9522	994	8044	8251	9522	9522		
IIEPLTSR	8	Unmodified	_IIEPLTSR_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.776742	927.538931	-0.51368	-0.00023875	-1.1482	-0.00053365	-1.6619	-0.0007724	464.776182490012	6.6757	0.09755	6.6757	6.6313	6.7289	0	720	49	0.841341816837976	0.0326363522004895	0.841341816837976	341.995368060834	0	13.2662861391078						227	12	2	NaN	NaN	NaN	0.0074192	1	2835	85.813	32.133	1	59710			9523	964	8045	8252	9523	9523		
IIETLTQQLQAK	12	Unmodified	_IIETLTQQLQAK_			0	0	0	Q9UHV9	Q9UHV9	Q9UHV9	PFDN2	Prefoldin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.403566	1384.79258	2.05	0.0014215	0.22569	0.00015649	2.2757	0.001578	693.404140188153	10.569	0.20395	10.569	10.516	10.72	0	429	67	1.03776581230406	0.0442637694346084	1.03776581230406	419.799943874465	0	17.9057044508577						734	24	5	NaN	NaN	NaN	4.2021E-05	1	14991	104.39	78.538	1	420710			9524	3223	8046	8253	9524	9524		
IIEVAPQVATQNVNPTPGATS	21	Unmodified	_IIEVAPQVATQNVNPTPGATS_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.05513	2106.0957	1.9841	0.0020913	-1.0077	-0.0010622	0.97641	0.0010292	1054.55577998718	12.263	0.11529	12.263	12.201	12.316	0	126	73	1.23951419873743	0.047654091933244	1.23951419873743	499.710433533859	0	19.2117580935176						605	14	4	NaN	NaN	NaN	9.9451E-08	1	33408	92.593	79.248	1	150820			9525	1154	8047	8254	9525	9525		
IIEVVDAIMTTAQSHQR	17	Unmodified	_IIEVVDAIMTTAQSHQR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.501474	1910.9884	1.1671	0.0011163	0.64311	0.00061513	1.8102	0.0017315	957.003675720689	15.189	0.21278	15.189	15.145	15.358	0	93	82	1.26131825079847	0.0535337452958722	1.26131825079847	508.840685399562	0	21.5965698039435						959	25	6	NaN	NaN	NaN	6.7959E-14	1	29854	183	164.9	1	485970			9526	1521	8048	8255	9526	9526		
IIEVVDAIMTTAQSHQR	17	Unmodified	_IIEVVDAIMTTAQSHQR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.003408	1910.9884	1.1027	0.00070354	1.2273	0.000783	2.33	0.0014865	638.338686278232	15.189	0.21278	15.189	15.136	15.349	1.7764E-15	534	115	0.967195187796614	0.0769009360955791	0.967195187796614	585.276226950586	0	46.5348569708282						1410	25	4	NaN	NaN	NaN	9.752E-06	1	29855	123.92	105.11	1	611660			9527	1521	8048	8255	9527	9527		
IIEVVDAIMTTAQSHQR	17	Oxidation (M)	_IIEVVDAIM(Oxidation (M))TTAQSHQR_	IIEVVDAIM(1)TTAQSHQR	IIEVVDAIM(57)TTAQSHQR	0	1	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.335047	1926.98331	0.48303	0.00031075	-0.068992	-4.4385E-05	0.41404	0.00026637	643.669617890009	11.642	0.18626	11.642	11.527	11.713	0	585	43	0.932794566565362	0.0283515051757137	0.932794566565362	564.425736246514	0	17.1552448481997						276	22	4	NaN	NaN	NaN	6.6604E-05	1	30220	57.042	46.071	1	67295			9528	1521	8048	8256	9528	9528	538	
IIEVVDAIMTTAQSHQR	17	Oxidation (M)	_IIEVVDAIM(Oxidation (M))TTAQSHQR_	IIEVVDAIM(1)TTAQSHQR	IIEVVDAIM(120)TTAQSHQR	0	1	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.498932	1926.98331	0.42671	0.00041156	0.9744	0.00093981	1.4011	0.0013514	965.001205575528	11.571	0.070986	11.571	11.536	11.607	0	87	25	1.26527909472281	0.0158412070176821	1.26527909472281	510.408023737028	0	6.39027326162807						113	9	3	NaN	NaN	NaN	5.8249E-10	1	30222	115.35	100.98	1	18493			9529	1521	8048	8256	9529	9529	538	
IIEYIGEEEATLVDFVCSK	19	Unmodified	_IIEYIGEEEATLVDFVCSK_			0	0	0	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1108.04558	2214.0766	0.49949	0.00055346	1.7478	0.0019366	2.2473	0.0024901	1108.54809280693	19.454	0.079775	19.454	19.419	19.499	0	96	31	1.2593374219024	0.0198123619244157	1.2593374219024	507.539925623747	0	7.98480575790279						144	10	3	NaN	NaN	NaN	0.0018121	1	34845	32.6	30.21	1	27429			9530	1147	8049	8257	9530	9530		
IIFDDFR	7	Unmodified	_IIFDDFR_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.242535	924.470518	-1.6713	-0.00077421	-2.9514	-0.0013672	-4.6227	-0.0021414	463.242304394051	12.44	0.079798	12.44	12.405	12.485	0	747	34	0.822982596624503	0.0224577750816375	0.822982596624503	334.548779670882	0	9.12925896428521						137	10	2	NaN	NaN	NaN	0.06376	1	2783	40.203	27.65	1	26486			9531	1097	8050	8258	9531	9531		
IIFVDEVFK	9	Unmodified	_IIFVDEVFK_			0	0	0	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.3157	1108.61685	-0.032912	-1.8277E-05	-0.75759	-0.0004207	-0.79051	-0.00043898	555.315073254142	16.041	0.15073	16.041	15.996	16.147	0	627	37	0.90440375274676	0.0243552312702084	0.90440375274676	366.751495647066	0	9.87647106510872						439	18	4	NaN	NaN	NaN	0.048758	1	6961	29.31	18.481	1	222650			9532	2632	8051	8259	9532	9532		
IIFVVGGPGSGK	12	Unmodified	_IIFVVGGPGSGK_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.832049	1129.64954	0.82224	0.00046525	-3.5923	-0.0020326	-2.77	-0.0015674	565.829833664873	10.693	0.23053	10.693	10.578	10.809	0	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	368.31335165693	0	9.87421312852581						416	27	3	NaN	NaN	NaN	0.0044644	1	7531	57.888	47.186	1	131590			9533	485	8052	8260	9533	9533		
IIFYSLIK	8	Unmodified	_IIFYSLIK_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.810054	995.605554	-1.5542	-0.00077525	-0.80267	-0.00040038	-2.3569	-0.0011756	498.809971431403	14.852	0.097515	14.852	14.808	14.905	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	349.926675480683	0	7.43983019839146						148	12	2	NaN	NaN	NaN	0.022403	1	4190	58.286	36.358	1	43109			9534	2223	8053	8261	9534	9534		
IIGATDSCGDLMFLMK	16	Unmodified	_IIGATDSCGDLMFLMK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.425001	1770.83545	1.2506	0.0011085	1.7176	0.0015225	2.9681	0.002631	886.426677191968	16.821	0.18633	16.821	16.741	16.927	0	270	49	1.14398322290989	0.0319531711961967	1.14398322290989	461.768616907904	0	12.897891659248						747	22	5	NaN	NaN	NaN	3.1055E-33	1	26438	157.74	141.86	1	217230			9535	1071	8054	8262	9535	9535		
IIGATDSSGELMFLMK	16	Unmodified	_IIGATDSSGELMFLMK_			0	0	0	Q13185;P83916	Q13185;P83916	Q13185	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.933516	1711.85248	0.81993	0.00070262	0.87828	0.00075263	1.6982	0.0014552	856.934533100907	16.803	0.11528	16.803	16.759	16.874	0	186	85	1.1997861197946	0.0557645800962567	1.1997861197946	484.423063926398	0	22.5153869536533						631	14	4	NaN	NaN	NaN	1.6119E-08	1	24820	86.838	70.551	1	138020			9536	1639;1482	8055	8263	9536	9536		
IIGATDSSGELMFLMK	16	Unmodified	_IIGATDSSGELMFLMK_			0	0	0	Q13185;P83916	Q13185;P83916	Q13185	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.933516	1711.85248	1.3228	0.0011335	1.117	0.00095719	2.4398	0.0020907	856.935129288208	16.794	0.29266	16.794	16.723	17.016	0	294	82	1.12800004657306	0.0539915312380199	1.12800004657306	455.438872483928	0	21.7995045172472						1751	34	6	NaN	NaN	NaN	1.1615E-24	1	24821	179.98	155.16	1	680630			9537	1639;1482	8055	8263	9537	9537		
IIGATDSSGELMFLMK	16	Oxidation (M)	_IIGATDSSGELMFLM(Oxidation (M))K_	IIGATDSSGELMFLM(1)K	IIGATDSSGELM(-35)FLM(35)K	0	1	0	Q13185;P83916	Q13185;P83916	Q13185	CBX3;CBX1	Chromobox protein homolog 3;Chromobox protein homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.930973	1727.84739	2.2338	0.0019321	0.47461	0.00041051	2.7084	0.0023426	864.931587983769	14.506	0.1064	14.506	14.444	14.551	0	315	34	1.11400032671325	0.0220086485817799	1.11400032671325	449.752934646493	0	8.88550393558978						273	13	4	NaN	NaN	NaN	3.7795E-12	1	25261	149.58	120.27	2	58387			9538	1639;1482	8055	8264	9538	9538	528	
IIGAVDQIQLTQAQLEER	18	Unmodified	_IIGAVDQIQLTQAQLEER_			0	0	0	Q6NZI2	Q6NZI2	Q6NZI2	PTRF	Polymerase I and transcript release factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.05239	2024.09022	1.3678	0.0013857	0.074648	7.5623E-05	1.4425	0.0014613	1013.55380476048	13.753	0.079778	13.753	13.717	13.797	0	165	52	1.21370334790578	0.0338036309766956	1.21370334790578	489.434620737821	0	13.6315577733124						218	10	4	NaN	NaN	NaN	5.812E-14	1	32050	110.14	100.12	1	40583			9539	2053	8056	8265	9539	9539		
IIGDLLQFQGSHK	13	Unmodified	_IIGDLLQFQGSHK_			0	0	0	Q14997	Q14997	Q14997	PSME4	Proteasome activator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.936664	1454.78816	-1.476	-0.00071725	-0.54555	-0.0002651	-2.0216	-0.00098236	486.271005946222	11.704	0.13303	11.704	11.624	11.758	0	741	43	0.827064408645228	0.0285846129737781	0.827064408645228	501.607592946968	0	17.3363268437391						211	16	3	NaN	NaN	NaN	0.05801	1	17105	31.425	28.546	1	53719			9540	1783	8057	8266	9540	9540		
IIGIMEEVADGFK	13	Unmodified	_IIGIMEEVADGFK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.370878	1420.7272	0.97832	0.00069595	0.76528	0.0005444	1.7436	0.0012403	711.370915459669	17.557	0.24827	17.557	17.459	17.708	0	459	79	1.01763759082241	0.0523695622090724	1.01763759082241	411.554670426966	0	21.179384595985						665	29	4	NaN	NaN	NaN	0.0043847	1	16114	55.754	43.158	1	160830			9541	1218	8058	8267	9541	9541		
IIGLDQVAGMSETALPGAFK	20	Unmodified	_IIGLDQVAGMSETALPGAFK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.53498	2017.05541	1.2511	0.001263	-0.78974	-0.00079727	0.46132	0.00046572	1010.03627238651	18.257	0.15075	18.257	18.204	18.355	0	177	97	1.2057522832638	0.063626053019193	1.2057522832638	486.239851210253	0	25.6582740771632						1336	18	6	NaN	NaN	NaN	4.2613E-16	1	31937	157.54	151.93	1	668460			9542	972	8059	8268	9542	9542		
IIGLDQVAGMSETALPGAFK	20	Unmodified	_IIGLDQVAGMSETALPGAFK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.359081	2017.05541	0.084211	5.6704E-05	0.54909	0.00036974	0.6333	0.00042644	673.360199383656	18.257	0.16847	18.257	18.213	18.381	0	516	52	0.979317271586824	0.0343482903066424	0.979317271586824	592.387170280705	0	20.777216014747						367	20	4	NaN	NaN	NaN	0.00089623	1	31938	66.509	61.167	1	80492			9543	972	8059	8268	9543	9543		
IIGLDQVAGMSETALPGAFK	20	Oxidation (M)	_IIGLDQVAGM(Oxidation (M))SETALPGAFK_	IIGLDQVAGM(1)SETALPGAFK	IIGLDQVAGM(62)SETALPGAFK	0	1	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.53244	2033.05033	1.298	0.0013207	-1.0456	-0.0010639	0.25234	0.00025676	1018.03329924567	15.854	0.21285	15.854	15.757	15.97	0	177	76	1.2057522832638	0.049704419810995	1.2057522832638	486.21370236576	0	20.0430638330034						988	25	5	NaN	NaN	NaN	0.00019141	1	32210	62.494	57.939	1	281970			9544	972	8059	8269	9544	9544	349	
IIGNLLYYR	9	Unmodified	_IIGNLLYYR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.826766	1123.63898	0.92756	0.00052206	-2.6138	-0.0014711	-1.6862	-0.00094904	562.82623548353	12.635	0.24826	12.635	12.538	12.786	0	597	46	0.924688525662974	0.030408192841195	0.924688525662974	374.915770927097	0	12.3290283648569						654	29	4	NaN	NaN	NaN	4.3554E-06	1	7372	154.92	119.99	1	453650			9545	1095	8060	8270	9545	9545		
IIGNSAFLLILK	12	Unmodified	_IIGNSAFLLILK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.413206	1300.81186	0.20987	0.00013671	-1.0955	-0.00071363	-0.88564	-0.00057692	651.412582995695	18.098	0.088654	18.098	18.053	18.142	0	531	28	0.969216233931596	0.0181869004475753	0.969216233931596	392.320203586059	0	7.36170963341056						175	11	3	NaN	NaN	NaN	0.0021973	1	12381	70.389	58.432	1	52257			9546	1901	8061	8271	9546	9546		
IIGVDINK	8	Unmodified	_IIGVDINK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.26601	870.517468	-2.9177	-0.0012729	-5.3226	-0.002322	-8.2403	-0.003595	436.266379262542	7.5536	0.062057	7.5536	7.5181	7.5801	0	783	31	0.798467866007927	0.0204460030373547	0.798467866007927	324.87775624096	0	8.31899676073579						126	8	3	NaN	NaN	NaN	0.05405	1	1872	51.43	19.302	1	50291			9547	658	8062	8272	9547	9547		
IIGVHQEDELLECLSPATSR	20	Unmodified	_IIGVHQEDELLECLSPATSR_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.382725	2266.12635	0.3133	0.00023697	-0.91303	-0.0006906	-0.59973	-0.00045363	756.71642438227	14.019	0.14188	14.019	13.939	14.081	0	606	55	0.918606045818476	0.0365075402693392	0.918606045818476	555.245795369288	0	22.0667590052321						482	17	4	NaN	NaN	NaN	0.0011079	1	35336	50.519	47.444	1	98813			9548	2452	8063	8273	9548	9548		
IIGYGLPFPK	10	Unmodified	_IIGYGLPFPK_			0	0	0	Q9UDY4	Q9UDY4	Q9UDY4	DNAJB4	DnaJ homolog subfamily B member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.826235	1103.63792	0.19034	0.00010523	-2.1612	-0.0011948	-1.9709	-0.0010896	552.825114824378	14.099	0.24827	14.099	13.983	14.232	0	621	52	0.908462957275599	0.0345104276120216	0.908462957275599	368.417986840208	0	13.995355742346						653	29	3	NaN	NaN	NaN	0.0056302	1	6826	56.014	13.179	1	259860			9549	3197	8064	8274	9549	9549		
IIHDFPQFYPLGIVQHD	17	Unmodified	_IIHDFPQFYPLGIVQHD_			0	0	0	P35244	P35244	P35244	RPA3	Replication protein A 14 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.351026	2038.03125	-0.070547	-4.7997E-05	-1.8119	-0.0012327	-1.8824	-0.0012807	680.684222962239	16.617	0.24828	16.617	16.546	16.794	0	654	61	0.886123392477847	0.0406709767799367	0.886123392477847	535.976703052541	0	24.6000683758971						1028	29	6	NaN	NaN	NaN	1.1655E-06	1	32314	132.9	126.05	1	674710			9550	963	8065	8275	9550	9550		
IIHDFPQFYPLGIVQHD	17	Unmodified	_IIHDFPQFYPLGIVQHD_			0	0	0	P35244	P35244	P35244	RPA3	Replication protein A 14 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.0229	2038.03125	1.1842	0.0012079	-1.2552	-0.0012803	-0.071026	-7.2448E-05	1020.52280138097	16.617	0.23056	16.617	16.537	16.768	0	168	61	1.21171599086077	0.0397607969895324	1.21171599086077	488.610439334425	0	16.0330808802328						751	27	5	NaN	NaN	NaN	6.7188E-07	1	32315	56.08	55.269	1	179610			9551	963	8065	8275	9551	9551		
IIHEDGYSEDECK	13	Unmodified	_IIHEDGYSEDECK_			0	0	0	P08754	P08754	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.838127	1593.6617	2.4936	0.0019895	-0.42544	-0.00033944	2.0681	0.00165	797.837813238493	3.5012	0.097549	3.5012	3.4746	3.5721	0	447	37	1.02569221487577	0.0241605388886725	1.02569221487577	414.377871756302	0	9.7608157105746						199	12	3	NaN	NaN	NaN	0.001437	1	21373	63.212	61.838	1	41563			9552	590	8066	8276	9552	9552		
IIHEDGYSEDECK	13	Unmodified	_IIHEDGYSEDECK_			0	0	0	P08754	P08754	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.227844	1593.6617	-0.68079	-0.00036233	3.0874	0.0016432	2.4066	0.0012809	532.229545787284	3.5012	0.10643	3.5012	3.4746	3.581	0	792	34	0.792332785124922	0.022498430910932	0.792332785124922	480.14897415109	0	13.6339158554319						245	13	4	NaN	NaN	NaN	0.00012495	1	21374	107.08	101.58	1	60530			9553	590	8066	8276	9553	9553		
IIHEDGYSEEECR	13	Unmodified	_IIHEDGYSEEECR_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.23511	1635.6835	-1.8106	-0.00098901	0.26431	0.00014438	-1.5463	-0.00084464	546.235541008635	13.114	0.13309	13.114	13.07	13.203	0	816	70	0.775960037304758	0.0470815091759569	0.775960037304758	470.123231036459	0	28.5248081753731						625	16	4	NaN	NaN	NaN	0.04991	1	22639	8.4737	8.1836	1	146750			9554	520	8067	8277	9554	9554		
IIHEDGYSEEECR	13	Unmodified	_IIHEDGYSEEECR_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.849026	1635.6835	3.2684	0.0026763	-2.7347	-0.0022393	0.53366	0.00043699	819.348061622407	3.776	0.044346	3.776	3.7583	3.8026	0	420	31	1.04379886199097	0.0201087800634321	1.04379886199097	421.599583073666	0	8.1221139431903						109	6	3	NaN	NaN	NaN	0.047827	1	22640	25.613	24.357	1	18689			9555	520	8067	8277	9555	9555		
IIHEDGYSEEECR	13	Unmodified	_IIHEDGYSEEECR_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.23511	1635.6835	-0.12513	-6.8352E-05	2.581	0.0014098	2.4559	0.0013415	546.236329699115	3.776	0.053194	3.776	3.7583	3.8115	0	780	25	0.800512323802183	0.0163568017170922	0.800512323802183	484.998472512378	0	9.90993344149683						102	7	3	NaN	NaN	NaN	0.0026478	1	22641	81.099	76.571	1	19583			9556	520	8067	8277	9556	9556		
IIHTSVWAGQK	11	Unmodified	_IIHTSVWAGQK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.345855	1238.67716	1.2952	0.00080348	0.5123	0.0003178	1.8075	0.0011213	620.346003818166	5.3898	0.11527	5.3898	5.3366	5.4519	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	384.336709496084	0	7.3768112575691						178	14	3	NaN	NaN	NaN	1.9009E-11	1	10587	138.26	95.424	1	44734			9557	2064	8068	8278	9557	9557		
IIILDEADSMTDGAQQALR	19	Unmodified	_IIILDEADSMTDGAQQALR_			0	0	0	P35250	P35250	P35250	RFC2	Replication factor C subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.52006	2059.02557	1.9277	0.0019865	-1.4292	-0.0014728	0.49847	0.00051369	1031.02020362323	15.775	0.10644	15.775	15.739	15.845	0	183	70	1.20177511391933	0.0457657372015507	1.20177511391933	484.568462364075	0	18.4532302656772						622	13	4	NaN	NaN	NaN	1.8119E-26	1	32687	160.07	143.94	1	164780			9558	965	8069	8279	9558	9558		
IIIPEIQK	8	Unmodified	_IIIPEIQK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.305136	952.595718	-0.20827	-9.9408E-05	-0.36283	-0.00017318	-0.5711	-0.00027259	477.304842888127	10.427	0.14185	10.427	10.33	10.472	0	717	43	0.84338031290707	0.028536968892656	0.84338031290707	342.692338390337	0	11.5954812446211						253	17	3	NaN	NaN	NaN	0.022894	1	3302	34.931	12.545	1	71501			9559	1264	8070	8280	9559	9559		
IIITVVEEQEQK	12	Unmodified	_IIITVVEEQEQK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.900857	1427.78716	2.9171	0.0020855	-4.2373	-0.0030293	-1.3202	-0.00094382	714.898427684354	9.8066	0.41671	9.8066	9.709	10.126	0	459	103	1.01763759082241	0.0684171433832683	1.01763759082241	411.535069911677	0	27.6680560342079						1501	48	6	NaN	NaN	NaN	1.2906E-16	1	16331	162.8	143.55	1	1778700			9560	1816	8071	8281	9560	9560		
IILDLISESPIK	12	Unmodified	_IILDLISESPIK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.905411	1339.79627	0.70021	0.00046978	0.98368	0.00065996	1.6839	0.0011297	670.906226005667	16.972	0.5232	16.972	16.856	17.38	0	465	112	1.01360860968299	0.0746238693827489	1.01360860968299	410.163902153321	0	30.1970772223223						2810	60	5	NaN	NaN	NaN	4.0697E-11	1	13596	136.84	95.045	1	5164200			9561	1360	8072	8282	9561	9561		
IILHNTMESLLER	13	Unmodified	_IILHNTMESLLER_			0	0	0	O15498	O15498	O15498	YKT6	Synaptobrevin homolog YKT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.620347	1567.83921	-1.4568	-0.00076282	-0.89626	-0.0004693	-2.3531	-0.0012321	523.61981998225	12.44	0.070939	12.44	12.405	12.476	0	768	28	0.808687310729125	0.0183873254729269	0.808687310729125	490.129181848786	0	11.1441896897177						181	9	4	NaN	NaN	NaN	0.00020251	1	20599	110.52	97.926	1	46794			9562	178	8073	8283	9562	9562		
IILHNTMESLLER	13	Unmodified	_IILHNTMESLLER_			0	0	0	O15498	O15498	O15498	YKT6	Synaptobrevin homolog YKT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.926883	1567.83921	1.8149	0.0014246	1.0993	0.00086284	2.9142	0.0022874	784.927697382612	12.44	0.15961	12.44	12.405	12.564	0	315	34	1.11400032671325	0.0220116788084446	1.11400032671325	450.118046023893	0	8.89394160609879						313	19	4	NaN	NaN	NaN	2.1812E-05	1	20601	86.243	68.773	1	111920			9563	178	8073	8283	9563	9563		
IILNTAVAEFFK	12	Unmodified	_IILNTAVAEFFK_			0	0	0	Q9H9A5	Q9H9A5	Q9H9A5	CNOT10	CCR4-NOT transcription complex subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.39247	1364.77039	-0.0083756	-5.7238E-06	-2.1094	-0.0014415	-2.1178	-0.0014473	683.392613247143	17.982	0.11529	17.982	17.947	18.062	0	504	37	0.987393073566096	0.0242240595168645	0.987393073566096	399.480953870291	0	9.800605920252						241	14	3	NaN	NaN	NaN	0.001618	1	14351	53.517	39.869	1	52070			9564	2931	8074	8284	9564	9564		
IILWDHDLNPER	12	Unmodified	_IILWDHDLNPER_			0	0	0	Q9HC35	Q9HC35	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.600052	1519.77833	-1.5761	-0.00080004	0.74158	0.00037643	-0.83455	-0.00042362	507.600538875743	11.784	0.133	11.784	11.722	11.855	0	747	37	0.822982596624503	0.0244942818992349	0.822982596624503	498.931150450889	0	14.8495974247554						281	16	3	NaN	NaN	NaN	0.0006476	1	19134	68.49	57.135	1	79111			9565	2956	8075	8285	9565	9565		
IIMTLAEDLLCSAAQNSR	18	Unmodified	_IIMTLAEDLLCSAAQNSR_			0	0	0	Q86XA9	Q86XA9	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.5059	2004.99725	0.52604	0.00052788	-4.3093	-0.0043244	-3.7832	-0.0037965	1004.00290960373	19.33	0.088633	19.33	19.277	19.366	0	177	31	1.2057522832638	0.0198858489699314	1.2057522832638	486.259851186608	0	8.01963230346428						200	11	3	NaN	NaN	NaN	0.0066898	1	31718	42.495	8.157	1	39218			9566	2186	8076	8286	9566	9566		
IINADSEDPK	10	Unmodified	_IINADSEDPK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.274761	1100.53497	1.564	0.00086217	0.66806	0.00036829	2.232	0.0012305	551.275299857122	3.3415	0.23065	3.3415	3.2971	3.5278	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	369.253726430183	0	7.40647997685591						329	27	3	NaN	NaN	NaN	0.00072042	1	6730	72.042	50.114	1	104050			9567	981	8077	8287	9567	9567		
IINAFFPEGEDQVNFR	16	Unmodified	_IINAFFPEGEDQVNFR_			0	0	0	Q99653	Q99653	Q99653	CHP1	Calcineurin B homologous protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.467958	1894.92136	2.046	0.0019406	-0.7101	-0.00067351	1.3359	0.001267	948.467235742051	15.402	0.18632	15.402	15.331	15.517	0	273	76	1.14198628764525	0.04987538898843	1.14198628764525	460.727977456481	0	20.1219465961162						536	22	4	NaN	NaN	NaN	0.0025091	1	29495	63.766	51.184	1	113470			9568	2663	8078	8288	9568	9568		
IINDLLQSLR	10	Unmodified	_IINDLLQSLR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.853512	1183.69247	1.0776	0.00063886	0.37539	0.00022255	1.453	0.00086141	592.853437301212	14.577	0.1596	14.577	14.524	14.684	0	534	49	0.967195187796614	0.032338985271784	0.967195187796614	391.908906271461	0	13.1038041831728						471	19	4	NaN	NaN	NaN	5.6005E-07	1	8984	139.02	42.709	1	172110			9569	2446	8079	8289	9569	9569		
IINEPTAAAIAYGLDK	16	Unmodified	_IINEPTAAAIAYGLDK_			0	0	0	P11142;P54652;P11021	P11142;P11021	P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.969922	1658.88794	0.21439	0.00011876	-0.37675	-0.00020871	-0.16236	-8.9944E-05	553.969735064389	13.363	0.14193	13.363	13.292	13.434	0	633	34	0.900343422309015	0.0223364666145487	0.900343422309015	545.418155558152	0	13.53118612379						441	17	5	NaN	NaN	NaN	0.00014196	1	23300	75.012	64.527	1	294760			9570	638;640	8080	8290	9570	9570		
IINEPTAAAIAYGLDK	16	Unmodified	_IINEPTAAAIAYGLDK_			0	0	0	P11142;P54652;P11021	P11142;P11021	P11021	HSPA8;HSPA2;HSPA5	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.451245	1658.88794	3.1719	0.0026341	0.45738	0.00037983	3.6292	0.0030139	830.451732715466	13.371	0.39019	13.371	13.292	13.682	0	354	232	1.08796502040166	0.153828558142439	1.08796502040166	439.387044751987	0	62.1254123921304						5396	45	6	NaN	NaN	NaN	2.3956E-12	1	23303	144.16	120.36	1	7801300			9571	638;640	8080	8290	9571	9571		
IINEPTAAAIAYGLDR	16	Unmodified	_IINEPTAAAIAYGLDR_			0	0	0	P0DMV8;P0DMV9;P17066	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.305305	1686.89408	0.12118	6.8261E-05	-0.60837	-0.0003427	-0.48719	-0.00027444	563.304791150123	13.708	0.13301	13.708	13.673	13.806	0	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	550.261282742936	0	14.7521048523942						318	16	4	NaN	NaN	NaN	6.8679E-05	1	24110	100.69	98.709	1	99732			9572	618;734	8081	8291	9572	9572		
IINEPTAAAIAYGLDR	16	Unmodified	_IINEPTAAAIAYGLDR_			0	0	0	P0DMV8;P0DMV9;P17066	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.454319	1686.89408	2.5795	0.0021783	2.4287	0.0020509	5.0082	0.0042292	844.456366748702	13.708	0.37238	13.708	13.629	14.001	0	339	229	1.09798411722691	0.151757679953565	1.09798411722691	443.372377391563	0	61.2806344761859						3092	43	6	NaN	NaN	NaN	0.060181	1	24113	29.98	20.237	1	2879800			9573	618;734	8081	8291	9573	9573		
IINFAPSLLR	10	Unmodified	_IINFAPSLLR_			0	0	0	O15397	O15397	O15397	IPO8	Importin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.347866	1142.68118	-0.87846	-0.00050279	-2.0288	-0.0011612	-2.9073	-0.001664	572.346840200665	14.79	0.12416	14.79	14.746	14.87	0	627	34	0.90440375274676	0.0223209853619647	0.90440375274676	366.617221905622	0	9.04823494898852						196	15	3	NaN	NaN	NaN	0.0015386	1	7870	72.042	45.819	1	50589			9574	172	8082	8292	9574	9574		
IINPMGLLVEELK	13	Unmodified	_IINPMGLLVEELK_			0	0	0	Q9H9J2	Q9H9J2	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.92582	1467.83709	0.60266	0.00044291	-1.0327	-0.00075897	-0.43005	-0.00031606	734.924919084843	19.978	0.053241	19.978	19.951	20.004	0	408	49	1.0518390438467	0.0321607366082963	1.0518390438467	425.254832519992	0	13.0024728974349						161	7	4	NaN	NaN	NaN	0.00037735	1	17527	58.476	54.868	1	52510			9575	2937	8083	8293	9575	9575		
IINQSAQTYGR	11	Unmodified	_IINQSAQTYGR_			0	0	0		REV__P16233	REV__P16233			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.828026	1249.6415	1.6387	0.0010256	-8.7475	-0.0054744	-7.1088	-0.0044489	625.822618005756	6.5338	0.17735	6.5338	6.4451	6.6225	0	531	34	0.969216233931596	0.0222315106769172	0.969216233931596	392.489004903642	0	9.0027624358836						262	21	3	NaN	NaN	NaN	0.0071006	1	10914	49.96	32.565	1	73230	+		9576	3487	8084	8294	9576	9576		
IIPGFMCQGGDFTR	14	Unmodified	_IIPGFMCQGGDFTR_			0	0	0	P62937;F5H284;Q9Y536;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759	P62937	P62937	PPIA;PPIAL4D;PPIAL4A;PPIAL4C;PPIAL4E	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.876336	1597.73812	2.0891	0.001671	0.55609	0.0004448	2.6452	0.0021158	799.877355295256	13.114	0.48777	13.114	13.008	13.496	0	405	169	1.05384839605172	0.112625118962554	1.05384839605172	425.743557588793	0	45.4993517100019						3986	56	7	NaN	NaN	NaN	1.085E-07	1	21497	127.03	118.55	1	7662200			9577	1417	8085	8295	9577	9577		
IIPPGSGIIHQVNLEYLAR	19	Unmodified	_IIPPGSGIIHQVNLEYLAR_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.396746	2089.16841	0.32833	0.00022898	-0.67044	-0.00046756	-0.34211	-0.00023858	697.730809734264	14.976	0.09757	14.976	14.95	15.047	1.7764E-15	567	76	0.944945209309785	0.0506242079777197	0.944945209309785	571.460826126311	0	30.6152689361418						431	12	3	NaN	NaN	NaN	0.033154	1	33177	22.039	18.598	1	76414			9578	793	8086	8296	9578	9578		
IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK	36	Unmodified	_IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1352.34878	4054.02451	1.9188	0.0025949	-0.70855	-0.00095821	1.2103	0.0016367	1353.01642904163	18.568	0.11525	18.568	18.506	18.621	0	165	160	1.21370334790578	0.105185899584643	1.21370334790578	731.641625650537	0	63.4079016922975						1928	14	6	NaN	NaN	NaN	0.00332	1	38769	26.522	26.223	1	378640			9579	1360	8087	8297	9579	9579		
IIPYLSFGEVEK	12	Unmodified	_IIPYLSFGEVEK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.881936	1393.74932	0.60694	0.00042357	-2.9741	-0.0020756	-2.3672	-0.001652	697.879161274478	15.278	0.12411	15.278	15.234	15.358	0	477	22	1.0055473068722	0.0141121546928573	1.0055473068722	406.740993957309	0	5.70832599065545						169	15	3	NaN	NaN	NaN	0.06657	1	15265	13.175	10.503	1	39008			9580	1991	8088	8298	9580	9580		
IIQEQDAGLDALSSIISR	18	Unmodified	_IIQEQDAGLDALSSIISR_			0	0	0	Q9UNK0	Q9UNK0	Q9UNK0	STX8	Syntaxin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.018012	1928.02147	1.3504	0.0013031	0.45801	0.00044198	1.8084	0.0017451	965.01829581271	17.548	0.10639	17.548	17.504	17.61	0	186	40	1.1997861197946	0.0258640285956666	1.1997861197946	483.986584119237	0	10.4333952902555						336	13	4	NaN	NaN	NaN	4.5053E-10	1	30252	72.075	68.339	1	86815			9581	3298	8089	8299	9581	9581		
IIQHCSNYSTQELLR	15	Unmodified	_IIQHCSNYSTQELLR_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.464892	1860.91523	1.7461	0.0016264	-0.73224	-0.00068206	1.0139	0.00094438	931.464826069608	7.1191	0.0798	7.1191	7.0747	7.1545	0	252	31	1.15595906938629	0.0199515145732845	1.15595906938629	466.427158663419	0	8.05039598710835						141	10	3	NaN	NaN	NaN	0.0030474	1	28716	46.358	36.108	1	26657			9582	79	8090	8300	9582	9582		
IIQLLDDYPK	10	Unmodified	_IIQLLDDYPK_			0	0	0	P05388;Q8NHW5	P05388	P05388	RPLP0;RPLP0P6	60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.342446	1216.67034	2.3934	0.0014584	-0.99231	-0.00060466	1.4011	0.00085373	609.341800988502	12.901	0.31921	12.901	12.795	13.114	0	528	94	0.971237000454584	0.0626438341606588	0.971237000454584	393.423743653245	0	25.3754456849812						1700	37	5	NaN	NaN	NaN	3.1135E-05	1	9933	102.55	30.507	1	1814000			9583	530	8091	8301	9583	9583		
IIQQAGQVWFPDSAFK	16	Unmodified	_IIQQAGQVWFPDSAFK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.977961	1833.94137	1.846	0.0016946	1.0971	0.0010071	2.9431	0.0027017	918.982120901347	15.109	0.12415	15.109	15.074	15.198	0	192	109	1.1958073123591	0.0717466250523344	1.1958073123591	482.558344926903	0	28.9527687960388						601	15	4	NaN	NaN	NaN	2.5009E-06	1	28085	82.437	78.932	1	153060			9584	1625	8092	8302	9584	9584		
IIQQVLQGLDYLHTK	15	Unmodified	_IIQQVLQGLDYLHTK_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.336716	1767.98832	0.031264	1.8457E-05	-0.68359	-0.00040355	-0.65233	-0.00038509	590.670492022403	15.26	0.29271	15.26	15.216	15.508	0	660	43	0.882057989648486	0.0284578263810398	0.882057989648486	534.068142477706	0	17.2306340996149						478	34	5	NaN	NaN	NaN	2.0579E-06	1	26366	114.93	96.123	1	246180			9585	2621	8093	8303	9585	9585		
IIQQVLQGLDYLHTK	15	Unmodified	_IIQQVLQGLDYLHTK_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.001436	1767.98832	1.5675	0.0013872	0.61505	0.00054432	2.1825	0.0019316	885.503328537845	15.26	0.097517	15.26	15.225	15.322	0	171	28	1.20972836110953	0.0178911243069704	1.20972836110953	488.31274311211	0	7.22183943813928						219	12	4	NaN	NaN	NaN	7.3276E-09	1	26367	140.01	99.149	1	59290			9586	2621	8093	8303	9586	9586		
IISAASEGGANVFTVSYFK	19	Unmodified	_IISAASEGGANVFTVSYFK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.004373	1959.99419	1.6119	0.0015813	0.78855	0.00077357	2.4005	0.0023549	981.50647324136	15.127	0.19508	15.127	15.03	15.225	0	186	61	1.1997861197946	0.0397880929127559	1.1997861197946	483.930160886278	0	16.0484088680108						755	23	5	NaN	NaN	NaN	1.3704E-14	1	30919	135.5	126.69	1	201740			9587	705	8094	8304	9587	9587		
IISDNLTYCK	10	Unmodified	_IISDNLTYCK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.807913	1225.60127	1.3864	0.00085096	1.0259	0.0006297	2.4123	0.0014807	613.808019956722	7.1014	0.19517	7.1014	7.0481	7.2432	0	573	34	0.940896116921038	0.0222746380512064	0.940896116921038	381.102251009075	0	9.02215935326211						536	23	4	NaN	NaN	NaN	4.412E-05	1	10162	90.761	41.436	1	283810			9588	3357	8095	8305	9588	9588		
IISESAQMNEFETLTAK	17	Unmodified	_IISESAQMNEFETLTAK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.472048	1910.92954	1.6022	0.0015324	2.1753	0.0020806	3.7775	0.003613	956.976603392034	13.194	0.079813	13.194	13.159	13.238	0	198	34	1.1918274123006	0.0218969686057855	1.1918274123006	480.80681057304	0	8.83367132514832						228	10	4	NaN	NaN	NaN	1.9247E-06	1	29851	98.865	83.249	1	52849			9589	2140	8096	8306	9589	9589		
IISGHIDLDNR	11	Unmodified	_IISGHIDLDNR_			0	0	0	O94874	O94874	O94874	UFL1	E3 UFM1-protein ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.835851	1251.65715	1.5456	0.00096882	-1.3879	-0.00087	0.15764	9.8816E-05	626.835152662979	6.4983	0.11527	6.4983	6.4629	6.5781	0	522	28	0.975277694896658	0.0181793540549698	0.975277694896658	394.936641910251	0	7.36169101388919						204	14	4	NaN	NaN	NaN	0.010453	1	10968	59.645	40.389	1	40522			9590	391	8097	8307	9590	9590		
IISIFSGTEK	10	Unmodified	_IISIFSGTEK_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.808239	1093.60193	0.26469	0.000145	-1.8109	-0.00099203	-1.5462	-0.00084703	547.807583343085	11.199	0.19512	11.199	11.154	11.35	0	654	46	0.886123392477847	0.0304799546936941	0.886123392477847	359.39906850824	0	12.3622369278112						493	23	4	NaN	NaN	NaN	0.0010282	1	6552	76.605	63.777	1	208690			9591	1638	8098	8308	9591	9591		
IISLDLPVAEVYK	13	Unmodified	_IISLDLPVAEVYK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.423968	1458.83338	0.8234	0.00060143	1.3253	0.00096806	2.1487	0.0015695	730.424789982652	16.573	0.12413	16.573	16.519	16.644	0	411	43	1.04982941439551	0.0281484102411274	1.04982941439551	424.466798638078	0	11.3809590567456						330	15	4	NaN	NaN	NaN	0.00041851	1	17239	75.474	68.335	1	81599			9592	1991	8099	8309	9592	9592		
IISLFSLLSK	10	Unmodified	_IISLFSLLSK_			0	0	0	Q7RTS9	Q7RTS9	Q7RTS9	DYM	Dymeclin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.85245	1119.69035	-0.4184	-0.00023466	0.19566	0.00010974	-0.22274	-0.00012492	560.853128496831	19.401	0.053235	19.401	19.375	19.428	0	636	22	0.898312834727904	0.0142141138880033	0.898312834727904	364.237277668366	0	5.76337100716432						81	7	2	NaN	NaN	NaN	0.015211	1	7266	36.24	32.347	1	20301			9593	2125	8100	8310	9593	9593		
IISNASCTTNCLAPLAK	17	Unmodified	_IISNASCTTNCLAPLAK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.978094	1832.91245	-0.10144	-6.208E-05	0.93015	0.00056923	0.82871	0.00050715	612.313075369917	9.381	0.079764	9.381	9.3455	9.4253	0	624	58	0.906433495720521	0.0385811807386501	0.906433495720521	548.675880615899	0	23.3536860860963						386	10	4	NaN	NaN	NaN	0.027115	1	28056	64.266	56.69	1	85751			9594	513	8101	8311	9594	9594		
IISNASCTTNCLAPLAK	17	Unmodified	_IISNASCTTNCLAPLAK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.463503	1832.91245	2.358	0.0021634	-1.3757	-0.0012621	0.98232	0.00090125	917.462861500585	9.2568	0.10645	9.2568	9.2036	9.31	0	285	91	1.13399579921816	0.0599617147655176	1.13399579921816	457.616746714208	0	24.1971662128907						1065	13	5	NaN	NaN	NaN	6.187E-26	1	28057	203.76	185.66	1	438020			9595	513	8101	8311	9595	9595		
IISNASCTTNCLAPLAK	17	Unmodified	_IISNASCTTNCLAPLAK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.463503	1832.91245	2.5813	0.0023682	0.30389	0.00027881	2.8852	0.002647	917.965326140059	9.381	0.40789	9.381	9.31	9.7179	0	276	313	1.13998907770044	0.207841117067339	1.13998907770044	460.035290076829	0	83.8729514609356						5829	47	7	NaN	NaN	NaN	9.4284E-71	1	28058	326.07	304.07	1	10967000			9596	513	8101	8311	9596	9596		
IISNLFLGR	9	Unmodified	_IISNLFLGR_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.813659	1031.61277	-0.31351	-0.00016202	-1.83	-0.00094577	-2.1435	-0.0011078	516.812848085715	13.176	0.10641	13.176	13.123	13.23	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	352.238585518694	0	9.08627567864016						183	13	3	NaN	NaN	NaN	0.0016214	1	5044	79.809	30.484	1	44268			9597	2418	8102	8312	9597	9597		
IISNVPADSLIR	12	Unmodified	_IISNVPADSLIR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.377352	1296.74015	1.6884	0.0010964	-6.6374	-0.0043102	-4.949	-0.0032137	649.373290946494	10.613	0.25713	10.613	10.569	10.826	0	507	64	0.985374541851584	0.0424126440707223	0.985374541851584	398.873961635262	0	17.1683950065592						624	30	4	NaN	NaN	NaN	4.3434E-05	1	12267	94.66	64.067	1	285370			9598	3238	8103	8313	9598	9598		
IISSDRDLLAVVFYGTEK	18	Unmodified	_IISSDRDLLAVVFYGTEK_			0	0	1	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.033362	2025.07826	0.22139	0.00014967	0.063029	4.261E-05	0.28442	0.00019228	676.367668947236	17.246	0.17737	17.246	17.193	17.371	0	540	40	0.963152256458504	0.0262845144362098	0.963152256458504	582.593223155971	0	15.8990231106217						687	21	5	NaN	NaN	NaN	0.0022939	1	32067	35.182	34.818	1	491750			9599	673	8104	8314	9599	9599		
IISYAQGFMLLR	12	Unmodified	_IISYAQGFMLLR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.391948	1410.76934	1.1038	0.00077975	-0.24326	-0.00017184	0.86059	0.00060791	706.391786248849	16.528	0.19507	16.528	16.457	16.652	0	444	67	1.02770517576159	0.0442759935610622	1.02770517576159	415.654506416653	0	17.907388893018						721	23	4	NaN	NaN	NaN	8.9383E-05	1	15787	102.55	87.398	1	228300			9600	1205	8105	8315	9600	9600		
IITHPNFNGNTLDNDIMLIK	20	Unmodified	_IITHPNFNGNTLDNDIMLIK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1142.09373	2282.1729	1.2772	0.0014587	-1.55	-0.0017702	-0.27281	-0.00031157	1142.59410359871	14.542	0.15071	14.542	14.489	14.639	0	63	100	1.28111162701928	0.0653674369749107	1.28111162701928	516.219325091497	0	26.3395737627175						1464	18	6	NaN	NaN	NaN	8.2851E-11	1	35490	96.78	94.391	1	653950		+	9601	24	8106	8316	9601	9601		
IITHPNFNGNTLDNDIMLIK	20	Unmodified	_IITHPNFNGNTLDNDIMLIK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.731577	2282.1729	1.8126	0.0013807	-0.28205	-0.00021484	1.5306	0.0011659	762.066444620572	14.542	0.39906	14.542	14.453	14.852	0	567	175	0.944945209309785	0.117326644189135	0.944945209309785	571.141883733912	0	70.91433441237						3973	46	7	NaN	NaN	NaN	1.4839E-29	1	35491	292.56	272.28	1	6370000		+	9602	24	8106	8316	9602	9602		
IITHPNFNGNTLDNDIMLIK	20	Oxidation (M)	_IITHPNFNGNTLDNDIM(Oxidation (M))LIK_	IITHPNFNGNTLDNDIM(1)LIK	IITHPNFNGNTLDNDIM(290)LIK	0	1	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.063215	2298.16782	1.6806	0.0012891	-0.95003	-0.00072873	0.73054	0.00056037	767.398138535268	13.735	0.30146	13.735	13.646	13.948	0	540	199	0.963152256458504	0.133325165705477	0.963152256458504	582.122051432759	0	80.5807373109018						4449	35	8	NaN	NaN	NaN	3.1952E-37	1	35628	292.56	246.36	1	4228000		+	9603	24	8106	8317	9603	9603	1	
IITIPPFLAYGEDGDGK	17	Unmodified	_IITIPPFLAYGEDGDGK_			0	0	0	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.469635	1804.92472	1.2333	0.0011143	0.14377	0.00012989	1.3771	0.0012441	903.470230594721	17.991	0.23939	17.991	17.867	18.107	0	291	73	1.12999890578964	0.0479957663241226	1.12999890578964	456.056921931145	0	19.3706395142127						1032	28	4	NaN	NaN	NaN	0.029416	1	27357	24.744	18.716	1	240400			9604	420	8107	8318	9604	9604		
IITITGTQDQIQNAQYLLQNSVK	23	Unmodified	_IITITGTQDQIQNAQYLLQNSVK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1295.19777	2588.38098	0.73316	0.00094959	-0.27511	-0.00035632	0.45805	0.00059327	1295.69910501574	17.167	0.13298	17.167	17.114	17.246	0	63	70	1.28111162701928	0.0455341401577483	1.28111162701928	515.849534834259	0	18.3346747653076						811	16	5	NaN	NaN	NaN	9.488E-10	1	37196	105.19	102.43	1	218810			9605	1360	8108	8319	9605	9605		
IITITGTQDQIQNAQYLLQNSVK	23	Unmodified	_IITITGTQDQIQNAQYLLQNSVK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.800937	2588.38098	2.0161	0.0017415	-0.13892	-0.00012	1.8772	0.0016215	864.468113979587	17.158	0.23054	17.158	17.105	17.335	0	357	124	1.08596037261705	0.0821001893526956	1.08596037261705	655.904188258911	0	49.5873140596377						2215	27	6	NaN	NaN	NaN	6.2327E-63	1	37197	355.87	344.81	1	1462700			9606	1360	8108	8319	9606	9606		
IITLAGPTNAIFK	13	Unmodified	_IITLAGPTNAIFK_			0	0	0	Q15366	Q15366	Q15366	PCBP2	Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.905745	1357.79694	1.5103	0.0010269	-0.58459	-0.00039746	0.92571	0.00062939	679.905508464888	14.631	0.36357	14.631	14.524	14.888	0	477	97	1.0055473068722	0.0644548725439256	1.0055473068722	406.846764609083	0	26.0785904139662						1589	42	5	NaN	NaN	NaN	1.6701E-05	1	14137	127.93	109.59	1	991680			9607	1834	8109	8320	9607	9607		
IITLEEGDIILTGTPK	16	Unmodified	_IITLEEGDIILTGTPK_			0	0	0	Q6P587	Q6P587	Q6P587	FAHD1	Acylpyruvase FAHD1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.98766	1711.96077	0.97192	0.00083293	-0.18704	-0.00016029	0.78489	0.00067264	856.986709061856	15.677	0.12412	15.677	15.606	15.73	0	168	31	1.21171599086077	0.0198776635699456	1.21171599086077	489.239598656108	0	8.02575869306884						252	15	4	NaN	NaN	NaN	1.3935E-08	1	24835	115.05	94.716	1	63299			9608	2067	8110	8321	9608	9608		
IIVDTYGGWGAHGGGAFSGK	20	Unmodified	_IIVDTYGGWGAHGGGAFSGK_			0	0	0	P31153;Q00266	P31153	P31153	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.478857	1948.94316	2.1306	0.0020783	-0.64644	-0.00063059	1.4841	0.0014477	975.478479399226	10.968	0.070945	10.968	10.933	11.004	0	153	46	1.22165005014568	0.0298021848658476	1.22165005014568	492.768562021544	0	12.0211019347912						206	9	3	NaN	NaN	NaN	1.9716E-05	1	30699	77.325	72.496	1	37942			9609	921	8111	8322	9609	9609		
IIVDTYGGWGAHGGGAFSGK	20	Unmodified	_IIVDTYGGWGAHGGGAFSGK_			0	0	0	P31153;Q00266	P31153	P31153	MAT2A;MAT1A	S-adenosylmethionine synthase isoform type-2;S-adenosylmethionine synthase isoform type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.654997	1948.94316	1.7658	0.0011489	-0.18115	-0.00011787	1.5846	0.0010311	650.989208977604	10.959	0.23055	10.959	10.879	11.11	0	549	112	0.957085760909907	0.0748824043810676	0.957085760909907	579.077514864015	0	45.3070335042971						1487	27	4	NaN	NaN	NaN	1.3683E-05	1	30700	76.009	66.267	1	467290			9610	921	8111	8322	9610	9610		
IIVLGLLPR	9	Unmodified	_IIVLGLLPR_			0	0	0	P68402	P68402	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.344595	992.674637	-0.098967	-4.9221E-05	-1.0305	-0.00051251	-1.1295	-0.00056173	497.344251274297	16.041	0.24827	16.041	15.934	16.182	0	663	58	0.880024865079826	0.0386454712216178	0.880024865079826	357.376756059586	0	15.6938669458198						1058	29	4	NaN	NaN	NaN	0.00063383	1	4127	88.35	87.558	1	913830			9611	1451	8112	8323	9611	9611		
IIVPFVTCGDLSSYDSDR	18	Unmodified	_IIVPFVTCGDLSSYDSDR_			0	0	0	Q9UET6	Q9UET6	Q9UET6	FTSJ1	Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.48823	2042.96191	1.2507	0.0012788	-2.4855	-0.0025413	-1.2348	-0.0012625	1022.48531492314	16.537	0.15072	16.537	16.475	16.626	0	195	43	1.19381749893585	0.0278593067113035	1.19381749893585	481.385222482115	0	11.2337594074243						555	18	4	NaN	NaN	NaN	0.0016515	1	32397	49.097	47.622	1	114940			9612	3199	8113	8324	9612	9612		
IIWEDIFPK	9	Unmodified	_IIWEDIFPK_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.82115	1159.62775	-0.52293	-0.00030373	-0.6324	-0.00036731	-1.1553	-0.00067104	580.820692268894	17.167	0.23938	17.167	17.016	17.255	0	585	25	0.932794566565362	0.0162075912580637	0.932794566565362	378.060079175349	0	6.56890965480977						222	28	2	NaN	NaN	NaN	0.033172	1	8343	49.325	31.93	1	47136			9613	971	8114	8325	9613	9613		
IIWELIK	7	Unmodified	_IIWELIK_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.789121	913.56369	-1.5692	-0.00071837	-0.77451	-0.00035456	-2.3437	-0.0010729	457.788834739294	14.684	0.21284	14.684	14.613	14.826	0	750	46	0.820941264895493	0.0306199842244862	0.820941264895493	333.777283896525	0	12.4494353060745						436	25	4	NaN	NaN	NaN	0.018744	1	2580	76.833	34.605	1	258080			9614	367	8115	8326	9614	9614		
IIWQFIK	7	Unmodified	_IIWQFIK_			0	0	0	P48735	P48735	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.289288	946.564024	-1.0949	-0.00051931	-1.4457	-0.0006857	-2.5407	-0.001205	474.28887104198	14.427	0.1064	14.427	14.391	14.498	0	735	28	0.831145085810763	0.0183617725733707	0.831145085810763	337.751389629667	0	7.46165056931096						161	13	3	NaN	NaN	NaN	0.021427	1	3186	56.89	27.58	1	42306			9615	1117	8116	8327	9615	9615		
IIYEQEGVYIHSSCGK	16	Unmodified	_IIYEQEGVYIHSSCGK_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.953826	1881.8931	1.7911	0.0016871	-1.0129	-0.00095412	0.77814	0.00073297	942.4540027847	7.4915	0.044395	7.4915	7.4826	7.527	0	210	16	1.18386433251387	0.0099559005124521	1.18386433251387	477.647474958378	0	4.01685447403565						43	6	2	NaN	NaN	NaN	3.197E-05	1	29180	72.031	60.013	1	8628.7			9616	2339	8117	8328	9616	9616		
IIYGGSVTGATCK	13	Unmodified	_IIYGGSVTGATCK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.839745	1325.66494	2.3463	0.0015576	-0.017196	-1.1415E-05	2.3291	0.0015462	663.839929226193	6.1702	0.4611	6.1702	6.055	6.5161	0	564	199	0.946969335010767	0.13328828716127	0.946969335010767	383.239553973679	0	53.9419195881564						3063	53	6	NaN	NaN	NaN	2.4012E-07	1	13155	135.28	111.71	1	2916800			9617	1303	8118	8329	9617	9617		
IIYIVHDEVK	10	Unmodified	_IIYIVHDEVK_			0	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.236051	1227.68632	-1.5622	-0.00064087	-0.39243	-0.00016099	-1.9546	-0.00080186	410.235846019543	7.2521	0.19507	7.2521	7.1989	7.394	0	804	31	0.78414869089473	0.0204659356679318	0.78414869089473	476.406142461238	0	12.4339906150888						382	23	4	NaN	NaN	NaN	0.059866	1	10241	13.274	8.7341	1	160080			9618	843	8119	8330	9618	9618		
IIYIVHDEVK	10	Unmodified	_IIYIVHDEVK_			0	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.850438	1227.68632	1.8258	0.0011226	-0.010998	-6.762E-06	1.8148	0.0011158	614.850270057182	7.2432	0.23939	7.2432	7.1989	7.4383	0	516	40	0.979317271586824	0.026255437790293	0.979317271586824	396.656926282679	0	10.6343485959651						468	28	4	NaN	NaN	NaN	0.00087177	1	10242	79.059	50.963	1	248740			9619	843	8119	8330	9619	9619		
IKDPDASKPEDWDER	15	Unmodified	_IKDPDASKPEDWDER_			0	0	2	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.951479	1799.83261	0.38417	0.00023087	0.86172	0.00051785	1.2459	0.00074872	600.95185469686	4.9376	0.15071	4.9376	4.8844	5.0351	0	729	58	0.835224628594324	0.0387529796949794	0.835224628594324	505.641939609815	0	23.4609123674999						587	18	5	NaN	NaN	NaN	6.1297E-07	1	27205	144.09	134.07	1	301500			9620	868	8120	8331	9620	9620		
ILAAALTECHR	11	Unmodified	_ILAAALTECHR_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.834797	1253.65504	1.6233	0.0010192	4.345	0.0027279	5.9683	0.0037471	627.836912843632	6.3299	0.18626	6.3299	6.2411	6.4274	0	525	55	0.973257487423603	0.0363662638982974	0.973257487423603	394.111685485197	0	14.7261847403794						441	22	4	NaN	NaN	NaN	0.00088533	1	11034	61.48	53.833	1	123900			9621	1075	8121	8332	9621	9621		
ILACDDLDEAAR	12	Unmodified	_ILACDDLDEAAR_			0	0	0	Q9P2R7	Q9P2R7	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.321916	1360.62928	1.6899	0.0011514	1.5761	0.0010739	3.2661	0.0022252	681.323185626377	8.0325	0.097762	8.0325	7.9793	8.077	0	510	31	0.983355730988811	0.0201895069753196	0.983355730988811	397.859646477833	0	8.16854964549327						233	12	3	NaN	NaN	NaN	0.052475	1	14221	36.514	12.678	1	115310			9622	3164	8122	8333	9622	9622		
ILACHGTDSVLELFCILSK	19	Unmodified	_ILACHGTDSVLELFCILSK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.042875	2175.1068	-0.076271	-5.5376E-05	-0.98136	-0.00071251	-1.0576	-0.00076789	726.376841039852	19.818	0.053225	19.818	19.8	19.853	0	621	34	0.908462957275599	0.0223240803246195	0.908462957275599	549.254763384118	0	13.4970912773797						127	7	4	NaN	NaN	NaN	2.5621E-05	1	34384	96.313	88.665	1	27738			9623	3308	8123	8334	9623	9623		
ILAEADGLSTNHWLIGTDK	19	Unmodified	_ILAEADGLSTNHWLIGTDK_			0	0	0	Q9UJ70	Q9UJ70	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.356616	2053.04802	0.85888	0.00058864	-2.0067	-0.0013753	-1.1478	-0.00078665	685.689364109865	13.522	0.062053	13.522	13.496	13.558	0	600	34	0.922661313351899	0.0222962488144068	0.922661313351899	558.049276690008	0	13.4853443443712						128	8	3	NaN	NaN	NaN	0.053835	1	32585	11.478	10.667	1	26870			9624	3244	8124	8335	9624	9624		
ILAEADGLSTNHWLIGTDK	19	Unmodified	_ILAEADGLSTNHWLIGTDK_			0	0	0	Q9UJ70	Q9UJ70	Q9UJ70	NAGK	N-acetyl-D-glucosamine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.53129	2053.04802	1.4065	0.0014452	-0.78183	-0.00080335	0.62465	0.00064185	1028.03249236196	13.522	0.044324	13.522	13.504	13.549	0	99	31	1.25735632164274	0.0198177914285889	1.25735632164274	506.98927931151	0	7.99089933456497						136	6	3	NaN	NaN	NaN	0.00081671	1	32586	37.886	34.992	1	22832			9625	3244	8124	8335	9625	9625		
ILAGLGFDPEMQNRPTQK	18	Unmodified	_ILAGLGFDPEMQNRPTQK_			0	0	1	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.350808	2014.0306	0.87437	0.00058788	-0.22259	-0.00014966	0.65178	0.00043822	672.350306161014	11.394	0.097567	11.394	11.35	11.447	0	582	25	0.934820374997243	0.0162053462177963	0.934820374997243	565.47688377154	0	9.80268394311088						205	12	4	NaN	NaN	NaN	0.0020892	1	31875	68.108	67.013	1	42618			9626	2308	8125	8336	9626	9626		
ILAIELENLK	10	Unmodified	_ILAIELENLK_			0	0	0	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.352814	1154.69108	0.73082	0.00042267	-0.25087	-0.00014509	0.47995	0.00027758	578.352680424171	13.93	0.1064	13.93	13.886	13.992	0	567	43	0.944945209309785	0.0283436532440857	0.944945209309785	383.003956709344	0	11.4882124731991						259	13	3	NaN	NaN	NaN	4.9396E-05	1	8205	111.39	63.234	1	88871			9627	5	8126	8337	9627	9627		
ILAIGLINEALDEGDAQK	18	Unmodified	_ILAIGLINEALDEGDAQK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.342196	1882.00476	-0.14698	-9.2356E-05	-1.4687	-0.00092282	-1.6156	-0.0010152	628.675521770608	18.532	0.097542	18.532	18.488	18.585	0	621	31	0.908462957275599	0.0202960249854377	0.908462957275599	549.796721013854	0	12.2830412591316						307	12	5	NaN	NaN	NaN	0.00061547	1	29197	73.891	71.344	1	128510			9628	1095	8127	8338	9628	9628		
ILAIGLINEALDEGDAQK	18	Unmodified	_ILAIGLINEALDEGDAQK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.009655	1882.00476	0.88633	0.00083493	-0.72965	-0.00068734	0.15668	0.00014759	942.510089331018	18.532	0.070945	18.532	18.497	18.568	0	138	58	1.23157729878518	0.0377235597293333	1.23157729878518	496.897756094694	0	15.2201182986237						343	9	4	NaN	NaN	NaN	1.338E-06	1	29198	86.729	85.254	1	79117			9629	1095	8127	8338	9629	9629		
ILAIGLINEALDEGDAQK	18	Unmodified	_ILAIGLINEALDEGDAQK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.009655	1882.00476	1.7379	0.0016371	-0.4055	-0.00038199	1.3324	0.0012551	942.511052356564	18.532	0.15074	18.532	18.488	18.639	0	270	88	1.14398322290989	0.0578554659869575	1.14398322290989	461.556652339091	0	23.3426283407668						1104	18	5	NaN	NaN	NaN	4.694E-19	1	29199	176	170.61	1	491120			9630	1095	8127	8338	9630	9630		
ILALCMGNHELYMR	14	Unmodified	_ILALCMGNHELYMR_			0	0	0	P35241;P26038	P35241;P26038	P26038	RDX;MSN	Radixin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.282572	1719.82589	-0.31222	-0.0001793	-0.79811	-0.00045834	-1.1103	-0.00063764	574.282460562921	12.547	0.1862	12.547	12.493	12.68	0	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	524.329316576035	0	14.7907941505326						524	22	6	NaN	NaN	NaN	0.030897	1	25050	56.202	55.15	1	268660			9631	846;962	8128	8339	9631	9631		
ILALCMGNHELYMR	14	Unmodified	_ILALCMGNHELYMR_			0	0	0	P35241;P26038	P35241;P26038	P26038	RDX;MSN	Radixin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.92022	1719.82589	1.9282	0.00166	0.0086883	7.4799E-06	1.9369	0.0016675	860.921119653072	12.547	0.14188	12.547	12.493	12.635	0	216	37	1.17988115188462	0.0239023706584269	1.17988115188462	476.368540937708	0	9.65041048186902						414	17	5	NaN	NaN	NaN	0.0043869	1	25052	51.454	43.896	1	128080			9632	846;962	8128	8339	9632	9632		
ILALDCGLK	9	Unmodified	_ILALDCGLK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.786253	1001.55795	0.33924	0.00017023	-0.63311	-0.00031769	-0.29387	-0.00014746	501.786033496136	10.152	0.12411	10.152	10.099	10.223	0	663	49	0.880024865079826	0.0325412920913477	0.880024865079826	357.333426409473	0	13.2133668765575						375	15	3	NaN	NaN	NaN	0.020719	1	4341	62.88	36.657	1	106520			9633	867	8129	8340	9633	9633		
ILALLDALSTVHSQK	15	Unmodified	_ILALLDALSTVHSQK_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.982162	1607.92466	-0.33989	-0.00018252	-0.73708	-0.0003958	-1.077	-0.00057831	536.981915402103	15.872	0.13301	15.872	15.828	15.961	0	633	34	0.900343422309015	0.0223364666145487	0.900343422309015	545.561151282937	0	13.5347336803707						324	16	4	NaN	NaN	NaN	0.0023986	1	21858	60	57.699	1	107180			9634	1768	8130	8341	9634	9634		
ILALLDALSTVHSQK	15	Unmodified	_ILALLDALSTVHSQK_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.969605	1607.92466	0.99804	0.00080339	2.1829	0.0017572	3.1809	0.0025606	804.971733370085	15.872	0.09755	15.872	15.837	15.934	0	225	31	1.17390432875292	0.0199295899458025	1.17390432875292	474.219051390327	0	8.05090415565354						250	12	4	NaN	NaN	NaN	2.6512E-09	1	21859	126.48	116.23	1	67876			9635	1768	8130	8341	9635	9635		
ILALVPPWTR	10	Unmodified	_ILALVPPWTR_			0	0	0	Q9H9T3	Q9H9T3	Q9H9T3	ELP3	Elongator complex protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.358234	1164.70191	-0.22341	-0.00013033	-1.2393	-0.00072296	-1.4627	-0.00085329	583.357295312338	16.041	0.16846	16.041	15.952	16.12	0	627	37	0.90440375274676	0.0243552312702084	0.90440375274676	366.534562454238	0	9.8706291410063						407	20	3	NaN	NaN	NaN	0.031247	1	8476	40.502	35.595	1	136220			9636	2939	8131	8342	9636	9636		
ILAQATSDLVNAIK	14	Unmodified	_ILAQATSDLVNAIK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.922123	1455.82969	1.2206	0.0008897	1.3897	0.001013	2.6103	0.0019027	728.923084402399	14.028	0.12414	14.028	13.983	14.107	0	402	31	1.05585747106793	0.020089366798685	1.05585747106793	426.912335603858	0	8.1226858130338						317	15	4	NaN	NaN	NaN	1.227E-08	1	17138	106	86.68	1	124600			9637	3406	8132	8343	9637	9637		
ILAQITGTEHLK	12	Unmodified	_ILAQITGTEHLK_			0	0	0	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.925877	1322.7558	-1.1969	-0.00052895	-0.071347	-3.153E-05	-1.2683	-0.00056048	441.925933384466	7.394	0.19508	7.394	7.3142	7.5092	0	759	28	0.814815566123307	0.0183796540051641	0.814815566123307	494.642494099875	0	11.1575653139048						289	23	4	NaN	NaN	NaN	0.026127	1	13081	29.755	22.198	1	84903			9638	2548	8133	8344	9638	9638		
ILAQITGTEHLK	12	Unmodified	_ILAQITGTEHLK_			0	0	0	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.385177	1322.7558	1.9218	0.001273	0.76041	0.00050368	2.6822	0.0017767	662.385719768214	7.394	0.12413	7.394	7.3585	7.4826	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.922872273282	0	8.14609859894875						228	15	4	NaN	NaN	NaN	2.5509E-05	1	13083	99.34	65.914	1	81792			9639	2548	8133	8344	9639	9639		
ILATGANVILTTGGIDDMCLK	21	Unmodified	_ILATGANVILTTGGIDDMCLK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.57124	2175.12793	0.29637	0.00032262	-1.132	-0.0012323	-0.83563	-0.00090964	1088.56895812742	16.528	0.57635	16.528	16.227	16.803	0	75	91	1.27319752866042	0.0594452849826381	1.27319752866042	513.183147044528	0	23.9603971399835						1454	66	6	NaN	NaN	NaN	2.9802E-11	1	34385	146.75	131.73	1	385300			9640	747	8134	8345	9640	9640		
ILATGANVILTTGGIDDMCLK	21	Unmodified	_ILATGANVILTTGGIDDMCLK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.049918	2175.12793	0.98153	0.00071264	-1.4408	-0.0010461	-0.45929	-0.00033347	726.381439580217	16.528	0.28375	16.528	16.44	16.723	0	417	58	1.04580932352505	0.0382251566582583	1.04580932352505	632.294045932588	0	23.110846706157						536	33	4	NaN	NaN	NaN	7.1185E-05	1	34386	102.26	102.11	1	154320			9641	747	8134	8345	9641	9641		
ILATGANVILTTGGIDDMCLK	21	Oxidation (M)	_ILATGANVILTTGGIDDM(Oxidation (M))CLK_	ILATGANVILTTGGIDDM(1)CLK	ILATGANVILTTGGIDDM(100)CLK	0	1	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.5687	2191.12284	-0.46979	-0.00051515	0.90321	0.00099044	0.43343	0.00047528	1097.07107931247	14.764	0.070976	14.764	14.737	14.808	0	75	46	1.27319752866042	0.0296921015055513	1.27319752866042	513.159366825815	0	11.9673339488397						188	9	3	NaN	NaN	NaN	2.356E-10	1	34577	104.15	102.57	1	32835			9642	747	8134	8346	9642	9642	249	
ILATPPQEDAPSVDIANIR	19	Unmodified	_ILATPPQEDAPSVDIANIR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.0285	2019.06367	1.1715	0.00078961	-0.32821	-0.00022122	0.84327	0.00056839	674.361974193477	13.105	0.2749	13.105	13.043	13.318	0	516	85	0.979317271586824	0.0565306657497275	0.979317271586824	592.383150246162	0	34.1950610225374						1384	32	4	NaN	NaN	NaN	2.5117E-07	1	31972	135.24	135.09	1	863440			9643	888	8135	8347	9643	9643		
ILATPPQEDAPSVDIANIR	19	Unmodified	_ILATPPQEDAPSVDIANIR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.53911	2019.06367	2.2576	0.0022814	-0.17353	-0.00017536	2.0841	0.0021061	1011.04059936693	13.105	0.3636	13.105	13.034	13.398	0	216	133	1.17988115188462	0.0875700232036043	1.17988115188462	475.803646175587	0	35.3138417961864						4765	42	6	NaN	NaN	NaN	3.016E-35	1	31973	248.24	237.27	1	5388800			9644	888	8135	8347	9644	9644		
ILCDVPCSGDGTMR	14	Unmodified	_ILCDVPCSGDGTMR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.846918	1579.67928	2.1135	0.0016715	0.30897	0.00024435	2.4225	0.0019158	790.847210964877	7.5624	0.27494	7.5624	7.456	7.7309	0	408	58	1.0518390438467	0.0381777082454866	1.0518390438467	424.973546974448	0	15.4249038228369						1053	32	5	NaN	NaN	NaN	0.00020515	1	20948	82.437	79.766	1	397580			9645	1581	8136	8348	9645	9645		
ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK	42	Unmodified	_ILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1142.041	4564.13489	1.6292	0.0018606	1.0194	0.0011642	2.6486	0.0030248	1142.79426383075	18.399	0.070915	18.399	18.364	18.435	0	297	49	1.12600091227925	0.0319839576220251	1.12600091227925	904.6834776602	0	25.6974552109903						348	9	5	NaN	NaN	NaN	0.015574	1	38787	6.6125	5.9	1	69758			9646	991	8137	8349	9646	9646		
ILDAAGANLK	10	Unmodified	_ILDAAGANLK_			0	0	0	Q9UBQ7	Q9UBQ7	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.287474	984.560395	0.18707	9.2281E-05	0.50894	0.00025105	0.69601	0.00034333	493.288403379933	6.5161	0.13303	6.5161	6.4629	6.5959	0	696	31	0.857641857947968	0.0203609064422459	0.857641857947968	348.326273524737	0	8.2694642301887						203	16	3	NaN	NaN	NaN	0.0089179	1	3945	58.426	45.599	1	53351			9647	3185	8138	8350	9647	9647		
ILDAVVAQEPLHR	13	Unmodified	_ILDAVVAQEPLHR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.612181	1459.81471	-0.3774	-0.00018402	-0.48229	-0.00023517	-0.85969	-0.0004192	487.612340603247	9.4164	0.25717	9.4164	9.2568	9.514	0	714	88	0.845418525735192	0.0590671875735707	0.845418525735192	512.722600842344	0	35.8225909596991						797	30	5	NaN	NaN	NaN	0.043145	1	17269	37.749	27.499	1	363090			9648	1796	8139	8351	9648	9648		
ILDAVVAQEPLHR	13	Unmodified	_ILDAVVAQEPLHR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.914633	1459.81471	1.4486	0.0010588	1.03	0.00075287	2.4787	0.0018117	730.915355811682	9.4164	0.15072	9.4164	9.3632	9.514	0	366	40	1.07994477139643	0.0260747970563766	1.07994477139643	436.640276813912	0	10.5424896773573						456	18	5	NaN	NaN	NaN	2.4762E-11	1	17270	179.95	166.15	1	219460			9649	1796	8139	8351	9649	9649		
ILDDDTIITTLENLK	15	Unmodified	_ILDDDTIITTLENLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.966925	1715.9193	2.0298	0.0017435	-1.5519	-0.001333	0.47788	0.00041049	858.965523678119	19.596	0.11529	19.596	19.552	19.667	0	327	61	1.10599442759226	0.0400405396622028	1.10599442759226	446.545440182482	0	16.1663747687472						528	14	5	NaN	NaN	NaN	2.0686E-06	1	24949	101.64	96.815	1	266040			9650	1737	8140	8352	9650	9650		
ILDDICVAK	9	Unmodified	_ILDDICVAK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.781167	1045.54778	0.58242	0.00030506	-1.7934	-0.00093936	-1.211	-0.0006343	523.780833600565	8.9198	0.2839	8.9198	8.831	9.1149	0	687	61	0.863749705078866	0.0406992154745967	0.863749705078866	350.524886099409	0	16.516460480025						724	33	3	NaN	NaN	NaN	0.054143	1	5372	37.722	25.656	1	582470			9651	1801	8141	8353	9651	9651		
ILDDSDSNLSVVK	13	Unmodified	_ILDDSDSNLSVVK_			0	0	0	A6NKT7;Q7Z3J3	A6NKT7	A6NKT7	RGPD3;RGPD4	RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.864471	1403.71439	1.7083	0.0012007	1.9396	0.0013633	3.648	0.002564	702.866342170935	8.343	0.13306	8.343	8.2898	8.4229	0	483	55	1.00151498427745	0.0362808886855345	1.00151498427745	405.081658792696	0	14.6744909481435						373	16	4	NaN	NaN	NaN	0.0003404	1	15580	76.255	0	1	86552			9652	19	8142	8354	9652	9652		
ILDDTEDTVVSQR	13	Unmodified	_ILDDTEDTVVSQR_			0	0	0	P42696	P42696	P42696	RBM34	RNA-binding protein 34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.870285	1489.72602	1.1389	0.00084944	0.082505	6.1538E-05	1.2214	0.00091097	745.870566853104	7.5447	0.15959	7.5447	7.5092	7.6688	0	450	37	1.02367897599655	0.0241638758474618	1.02367897599655	413.813019546891	0	9.76802949250776						287	19	3	NaN	NaN	NaN	0.00027012	1	18214	84.309	73.522	1	98042			9653	1054	8143	8355	9653	9653		
ILDEIEEHNIK	11	Unmodified	_ILDEIEEHNIK_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.573392	1351.69835	-1.1709	-0.00052874	-0.087333	-3.9437E-05	-1.2582	-0.00056817	451.57347283709	7.4383	0.16846	7.4383	7.3851	7.5536	0	789	34	0.794378096728713	0.0224952996214562	0.794378096728713	482.129104768832	0	13.6529930931658						367	20	4	NaN	NaN	NaN	0.047549	1	13940	23.836	17.145	1	146850			9654	1792	8144	8356	9654	9654		
ILDETQEAVEYQR	13	Unmodified	_ILDETQEAVEYQR_			0	0	0	Q96FZ7	Q96FZ7	Q96FZ7	CHMP6	Charged multivesicular body protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.391384	1592.76822	2.2412	0.0017871	-2.0497	-0.0016344	0.19151	0.00015271	797.39016891854	7.8552	0.11519	7.8552	7.802	7.9172	0	414	28	1.04781950764076	0.0180891625147663	1.04781950764076	423.319311400908	0	7.3080256320207						193	14	3	NaN	NaN	NaN	1.765E-07	1	21350	160.62	139.47	1	50126			9655	2531	8145	8357	9655	9655		
ILDGMFAICGVSDSK	15	Unmodified	_ILDGMFAICGVSDSK_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.889109	1611.76366	2.3469	0.0018937	-5.025	-0.0040546	-2.6781	-0.0021609	806.881790316521	15.5	0.1686	15.5	15.429	15.597	0	366	34	1.07994477139643	0.0220632885593353	1.07994477139643	436.253607530849	0	8.91266802056759						503	20	4	NaN	NaN	NaN	0.0010138	1	21945	81.48	77.497	1	177920			9656	664	8146	8358	9656	9656		
ILDIDNVDLAMGK	13	Unmodified	_ILDIDNVDLAMGK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.873785	1415.73302	1.1621	0.0008238	0.93167	0.00066044	2.0938	0.0014842	708.87454203001	14.71	0.14191	14.71	14.666	14.808	-1.7764E-15	438	40	1.03173026378327	0.0261612711685622	1.03173026378327	417.268242350275	0	10.5805441803421						369	17	4	NaN	NaN	NaN	4.6731E-06	1	15970	103.69	80.788	1	148090			9657	211	8147	8359	9657	9657		
ILDILEYIHEHEYVHGDIK	19	Unmodified	_ILDILEYIHEHEYVHGDIK_			0	0	0	Q99986	Q99986	Q99986	VRK1	Serine/threonine-protein kinase VRK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	584.803488	2335.18485	-0.52045	-0.00030436	0.3261	0.00019071	-0.19434	-0.00011365	585.054016256988	15.411	0.11537	15.411	15.384	15.5	0	678	19	0.869855008346864	0.0122063695890653	0.869855008346864	700.909989408579	0	9.83562352034801						118	14	3	NaN	NaN	NaN	0.03529	1	35938	17.807	15.836	1	27804			9658	2685	8148	8360	9658	9658		
ILDIYHQEACGGCIISVGGQIPNNLAVPLYK	31	Unmodified	_ILDIYHQEACGGCIISVGGQIPNNLAVPLYK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1138.25125	3411.73192	1.6159	0.0018393	0.21732	0.00024736	1.8332	0.0020866	1138.91995547357	17.539	0.11528	17.539	17.513	17.628	0	267	61	1.14597988355104	0.0399359777538084	1.14597988355104	691.262116637342	0	24.0896274954987						615	14	6	NaN	NaN	NaN	8.6061E-05	1	38613	38.2	37.118	1	128350			9659	922	8149	8361	9659	9659		
ILDLGITGPEGHVLSRPEEVEAEAVNR	27	Unmodified	_ILDLGITGPEGHVLSRPEEVEAEAVNR_			0	0	1	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	725.883264	2899.50395	0.7494	0.00054397	0.62039	0.00045033	1.3698	0.0009943	726.134510220787	13.442	0.1242	13.442	13.371	13.496	-1.7764E-15	513	58	0.981336640919867	0.0383362142097218	0.981336640919867	789.829565034757	0	30.8549320709776						469	15	5	NaN	NaN	NaN	0.019182	1	38074	20.596	17.529	1	89648			9660	1889	8150	8362	9660	9660		
ILDLVISCFK	10	Unmodified	_ILDLVISCFK_			0	0	0	P49590	P49590	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.341392	1206.66823	-0.43364	-0.00026207	-2.5005	-0.0015112	-2.9342	-0.0017732	604.340181487723	16.298	0.097519	16.298	16.262	16.36	0	564	34	0.946969335010767	0.0222592210224549	0.946969335010767	383.629189691202	0	9.01749043848889						197	12	3	NaN	NaN	NaN	0.002344	1	9658	49.16	37.093	1	44277			9661	1138	8151	8363	9661	9661		
ILDMCAAPGSK	11	Unmodified	_ILDMCAAPGSK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.783384	1161.55222	0.59143	0.00034409	0.37777	0.00021978	0.9692	0.00056387	581.783969180876	7.128	0.27502	7.128	7.0481	7.3231	0	630	43	0.902373728295776	0.028418378530508	0.902373728295776	365.723437949205	0	11.5176969045276						430	32	2	NaN	NaN	NaN	0.0008264	1	8375	81.099	50.537	1	199090			9662	1581	8152	8364	9662	9662		
ILDMCCAPGGK	11	Unmodified	_ILDMCCAPGGK_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.274869	1220.53518	0.95641	0.00058463	-2.5601	-0.0015649	-1.6037	-0.0009803	611.275873900661	7.0569	0.23948	7.0569	6.9417	7.1811	0	594	40	0.926715457081489	0.0263501137530128	0.926715457081489	375.375856864944	0	10.673391117999						622	28	7	NaN	NaN	NaN	0.030914	1	10019	32.14	23.163	1	177680			9663	1077	8153	8365	9663	9663		
ILDNLMEMK	9	Unmodified	_ILDNLMEMK_			0	0	0	Q8WVM8	Q8WVM8	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.782853	1105.55115	-0.052725	-2.9198E-05	0.70726	0.00039167	0.65453	0.00036247	553.782218860156	12.644	0.097525	12.644	12.6	12.697	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	367.58710060229	0	8.23067220416237						162	12	3	NaN	NaN	NaN	0.050117	1	6865	30.593	13.197	1	43464			9664	2381	8154	8366	9664	9664		
ILDNTSEPQPGEAR	14	Unmodified	_ILDNTSEPQPGEAR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.875901	1525.73725	3.159	0.0024131	-2.7619	-0.0021097	0.39711	0.00030334	763.873928967736	5.1061	0.26603	5.1061	5.0351	5.3012	0	456	73	1.01965166402748	0.0483611669559018	1.01965166402748	412.095471025619	0	19.5453198176745						968	31	4	NaN	NaN	NaN	9.7249E-12	1	19291	172.51	148.67	1	358300			9665	1163	8155	8367	9665	9665		
ILDPAYPDITLPLNSDVPK	19	Unmodified	_ILDPAYPDITLPLNSDVPK_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.06189	2080.10922	0.072643	7.5626E-05	-0.4249	-0.00044235	-0.35226	-0.00036672	1041.56213859437	16.98	0.12412	16.98	16.936	17.06	0	108	91	1.25141139212444	0.059543136879137	1.25141139212444	504.548073553079	0	24.006793604999						722	15	4	NaN	NaN	NaN	0.0029186	1	33035	46.206	42.566	1	142210			9666	407	8156	8368	9666	9666		
ILDPEGLALGAVIASSK	17	Unmodified	_ILDPEGLALGAVIASSK_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.47472	1652.93489	2.0417	0.0016895	0.64565	0.00053426	2.6874	0.0022237	827.475115146961	17.814	0.17733	17.814	17.761	17.938	0	300	49	1.12400150285141	0.0319971654265232	1.12400150285141	453.954329009688	0	12.9228045732688						521	21	4	NaN	NaN	NaN	1.0289E-06	1	23146	77.431	75.295	1	153770			9667	2220	8157	8369	9667	9667		
ILDQGEDFPASEMTR	15	Unmodified	_ILDQGEDFPASEMTR_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.895977	1707.7774	2.7871	0.0023827	-0.78916	-0.00067465	1.9979	0.001708	855.397115326198	10.986	0.64733	10.986	10.676	11.323	0	372	73	1.07593298845566	0.0481148947733248	1.07593298845566	434.424721297582	0	19.4271390285803						1678	74	4	NaN	NaN	NaN	2.8903E-12	1	24694	105.78	85.597	1	694840			9668	892	8158	8370	9668	9668		
ILDSVGIEADDDRLNK	16	Unmodified	_ILDSVGIEADDDRLNK_			0	0	1	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.639012	1771.89521	0.20415	0.00012078	-0.053534	-3.1673E-05	0.15061	8.9108E-05	591.638950937045	8.9109	0.062192	8.9109	8.8842	8.9464	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	532.827992692086	0	12.3107997052997						180	8	3	NaN	NaN	NaN	0.0046148	1	26471	26.517	19.377	1	38373			9669	529	8159	8371	9669	9669		
ILDSVGIEADDDRLNK	16	Unmodified	_ILDSVGIEADDDRLNK_			0	0	1	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.95488	1771.89521	2.7955	0.0024795	-1.4325	-0.0012706	1.363	0.0012089	886.953632215375	9.106	0.31041	9.106	9.0528	9.3632	0	177	91	1.2057522832638	0.0597067611172974	1.2057522832638	486.699437159964	0	24.1005117168625						1582	36	6	NaN	NaN	NaN	1.6087E-55	1	26472	310.51	276.78	1	1085300			9670	529	8159	8371	9670	9670		
ILDSVGIEADDDRLNK	16	Unmodified	_ILDSVGIEADDDRLNK_			0	0	1	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.639012	1771.89521	1.2258	0.00072525	0.28547	0.00016889	1.5113	0.00089414	591.639142055144	9.106	0.46113	9.106	9.0528	9.514	0	645	112	0.892219381832517	0.0752257329114061	0.892219381832517	540.211396149166	0	45.546867765806						2500	53	6	NaN	NaN	NaN	3.8199E-12	1	26473	232.19	204.6	1	3567300			9671	529	8159	8371	9671	9671		
ILDVASLEVLNEVNR	15	Unmodified	_ILDVASLEVLNEVNR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.467426	1682.9203	0.6074	0.00051172	2.2578	0.0019021	2.8652	0.0024139	842.46953538432	16.901	0.10646	16.901	16.847	16.954	0	228	52	1.17191150690002	0.0338966093488604	1.17191150690002	473.233793063993	0	13.6879115186793						345	13	4	NaN	NaN	NaN	9.2292E-05	1	23995	76.255	63.081	1	87432			9672	2420	8160	8372	9672	9672		
ILDVASLEVLNEVNRR	16	Unmodified	_ILDVASLEVLNEVNRR_			0	0	1	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.014413	1839.02141	0.68245	0.00041904	-1.8989	-0.0011659	-1.2164	-0.0007469	614.346643746635	15.136	0.22168	15.136	15.092	15.313	0	570	55	0.942920803299286	0.0364216673662339	0.942920803299286	570.747906124071	0	22.0459558364706						351	26	4	NaN	NaN	NaN	0.033321	1	28205	46.358	32.58	1	109530			9673	2420	8161	8373	9673	9673		
ILDVGCGGGLLTEPLGR	17	Unmodified	_ILDVGCGGGLLTEPLGR_			0	0	0	Q9NZJ6	Q9NZJ6	Q9NZJ6	COQ3	Ubiquinone biosynthesis O-methyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.961454	1725.90835	1.6953	0.0014647	2.0313	0.001755	3.7266	0.0032197	864.966653477911	15.313	0.088668	15.313	15.251	15.34	0	282	46	1.13599383354359	0.0299787708874888	1.13599383354359	458.636420577388	0	12.1033721901976						219	11	3	NaN	NaN	NaN	0.0037833	1	25217	41.87	39.886	1	45289			9674	3133	8162	8374	9674	9674		
ILDVIGLPGEEDWPR	15	Unmodified	_ILDVIGLPGEEDWPR_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.948869	1707.88319	1.7233	0.0014733	-1.7652	-0.0015091	-0.041875	-3.5801E-05	854.947192450047	17.548	0.14189	17.548	17.486	17.628	0	360	88	1.08395544855938	0.0580708078100685	1.08395544855938	437.663699863593	0	23.4469826541305						800	17	4	NaN	NaN	NaN	5.7418E-05	1	24703	55.578	53.736	1	214210			9675	1500	8163	8375	9675	9675		
ILDVLEEIPK	10	Unmodified	_ILDVLEEIPK_			0	0	0	Q16718	Q16718	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.844822	1167.67509	0.073934	4.324E-05	-1.1957	-0.00069927	-1.1217	-0.00065603	584.844096528303	15.677	0.20394	15.677	15.579	15.783	0	639	103	0.896281965493857	0.0689491987437675	0.896281965493857	363.232159190668	0	27.9427315268643						1145	24	4	NaN	NaN	NaN	4.3322E-05	1	8555	102.55	83.058	1	535630			9676	1902	8164	8376	9676	9676		
ILDVNDNIPVVENK	14	Unmodified	_ILDVNDNIPVVENK_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.42777	1580.84099	1.7223	0.0013631	0.69979	0.00055383	2.4221	0.0019169	791.428942415284	11.864	0.13302	11.864	11.82	11.953	0	363	55	1.08195024817156	0.0360861602864868	1.08195024817156	437.136555591865	0	14.5797644936345						534	16	4	NaN	NaN	NaN	1.0121E-07	1	21007	112.73	94.22	1	212280			9677	1722	8165	8377	9677	9677		
ILDWHVANTDK	11	Unmodified	_ILDWHVANTDK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.894577	1310.6619	-1.7036	-0.00074599	-1.2156	-0.00053229	-2.9191	-0.0012783	437.894067544296	8.1213	0.21281	8.1213	8.077	8.2898	0	870	64	0.739054571787983	0.0430954119433783	0.739054571787983	448.693709951864	0	26.1640222588671						941	25	4	NaN	NaN	NaN	0.063338	1	12677	11.355	8.253	1	431500			9678	1002	8166	8378	9678	9678		
ILDWHVANTDK	11	Unmodified	_ILDWHVANTDK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.338227	1310.6619	1.7992	0.0011809	1.2289	0.00080656	3.028	0.0019874	656.339488172043	8.1213	0.32829	8.1213	7.997	8.3253	0	513	76	0.981336640919867	0.0504424030257907	0.981336640919867	397.194930715384	0	20.4165073834051						1075	38	5	NaN	NaN	NaN	1.6546E-07	1	12683	148.9	131.5	1	630840			9679	1002	8166	8378	9679	9679		
ILEAWEANDHTQAAGGMRR	19	Unmodified	_ILEAWEANDHTQAAGGMRR_			0	0	1	O75170	O75170	O75170	PPP6R2	Serine/threonine-protein phosphatase 6 regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.344716	2125.01232	1.1503	0.00081596	-7.6363	-0.0054168	-6.486	-0.0046008	709.673632256457	6.587	0.1242	6.587	6.5338	6.658	0	609	19	0.916577990479294	0.0121708628142703	0.916577990479294	554.243935728859	0	7.35957766547483						182	15	4	NaN	NaN	NaN	0.048426	1	33681	14.949	9.5617	1	38633			9680	309	8167	8379	9680	9680		
ILEEIDTLILPENFK	15	Unmodified	_ILEEIDTLILPENFK_			0	0	0	Q99933	Q99933	Q99933	BAG1	BAG family molecular chaperone regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.995485	1785.97642	1.1937	0.0010672	-2.2722	-0.0020314	-1.0785	-0.00096415	894.493709197886	18.851	0.12412	18.851	18.772	18.896	0	276	34	1.13998907770044	0.0219723346163216	1.13998907770044	460.126086732561	0	8.86854491955336						245	15	3	NaN	NaN	NaN	4.5188E-08	1	26867	101.64	84.229	1	67240			9681	2682	8168	8380	9681	9681		
ILEFFGLK	8	Unmodified	_ILEFFGLK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.786579	965.558604	-0.45258	-0.00021895	-0.67005	-0.00032416	-1.1226	-0.00054311	483.786337606732	16.2	0.46109	16.2	16.129	16.59	0	717	61	0.84338031290707	0.0407614442197906	0.84338031290707	342.626889438102	0	16.5595125097145						1378	53	5	NaN	NaN	NaN	0.016917	1	3559	60.709	13.873	1	2294900			9682	554	8169	8381	9682	9682		
ILEGSGATEFHCSAR	15	Unmodified	_ILEGSGATEFHCSAR_			0	0	0	Q9NTM9	Q9NTM9	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.883204	1633.75185	2.6705	0.0021842	-2.0905	-0.0017098	0.58	0.00047438	817.881290111881	5.576	0.070928	5.576	5.5405	5.6115	0	288	25	1.13199748998575	0.0159897747860325	1.13199748998575	457.228325888091	0	6.45847541308353						135	9	3	NaN	NaN	NaN	0.0010138	1	22585	59.67	56.166	1	34013			9683	3045	8170	8382	9683	9683		
ILELDQFK	8	Unmodified	_ILELDQFK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.2844	1004.55425	-0.55215	-0.00027789	-0.26248	-0.0001321	-0.81464	-0.00040999	503.284387194992	11.864	0.21284	11.864	11.811	12.024	0	693	46	0.85967808974117	0.0305434851459953	0.85967808974117	349.057523060379	0	12.401657548237						600	25	4	NaN	NaN	NaN	0.0027296	1	4388	89.123	18.453	1	600160			9684	673	8171	8383	9684	9684		
ILEPGLNILIPVLDR	15	Unmodified	_ILEPGLNILIPVLDR_			0	0	0	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.011273	1674.00799	1.8215	0.0015265	-0.69883	-0.00058562	1.1227	0.00094084	838.010935666677	19.942	0.079832	19.942	19.915	19.995	0	333	46	1.10198982404297	0.0300366027940016	1.10198982404297	445.017826707417	0	12.1297160875955						269	10	4	NaN	NaN	NaN	1.3965E-08	1	23746	154.09	138.21	1	138160			9685	3256	8172	8384	9685	9685		
ILEQEEEEEQAGKPGEPSK	19	Unmodified	_ILEQEEEEEQAGKPGEPSK_			0	0	1	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.674451	2126.00152	2.3996	0.0017029	0.43826	0.00031102	2.8378	0.0020139	710.009045948511	4.7691	0.13298	4.7691	4.7337	4.8667	0	537	31	0.965173861991602	0.0202174565849151	0.965173861991602	583.627495681288	0	12.2252207818303						360	16	5	NaN	NaN	NaN	2.1815E-07	1	33693	80.128	62.713	1	136410			9686	2786	8173	8385	9686	9686		
ILESASSNSHLADYVLYK	18	Unmodified	_ILESASSNSHLADYVLYK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.51256	2009.01057	1.321	0.0013283	0.99628	0.0010018	2.3173	0.0023301	1006.01564092986	11.376	0.044337	11.376	11.358	11.403	0	144	22	1.22760721615852	0.013898148487385	1.22760721615852	495.066763969164	0	5.60481504690364						71	6	3	NaN	NaN	NaN	0.0036215	1	31795	41.87	41.351	1	10480			9687	1901	8174	8386	9687	9687		
ILETWGELLSK	11	Unmodified	_ILETWGELLSK_			0	0	0	Q9Y3P9	Q9Y3P9	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.861003	1287.70745	0.2305	0.00014864	-0.10256	-6.6135E-05	0.12794	8.2503E-05	645.361862770526	15.659	0.15072	15.659	15.606	15.757	0	543	34	0.961130371139249	0.0222407417065758	0.961130371139249	389.088798466618	0	9.00358965595967						211	18	3	NaN	NaN	NaN	0.00067708	1	12004	94.804	57.081	1	58790			9688	3397	8175	8387	9688	9688		
ILEVHVDK	8	Unmodified	_ILEVHVDK_			0	0	0	O60884	O60884	O60884	DNAJA2	DnaJ homolog subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.776742	951.538931	1.1674	0.00055659	0.23922	0.00011405	1.4066	0.00067065	476.776894204318	5.0351	0.14186	5.0351	4.9997	5.1415	0	693	34	0.85967808974117	0.0223985529654932	0.85967808974117	349.320160563501	0	9.10139063873538						242	17	3	NaN	NaN	NaN	0.062879	1	3280	37.722	7.1609	1	74467			9689	291	8176	8388	9689	9689		
ILEVNHVNVEGATHK	15	Unmodified	_ILEVNHVNVEGATHK_			0	0	0	Q96L92	Q96L92	Q96L92	SNX27	Sorting nexin-27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.965283	1658.87402	0.34895	0.0001933	1.1867	0.00065736	1.5356	0.00085067	553.965645751493	5.6647	0.079736	5.6647	5.6471	5.7268	0	717	22	0.84338031290707	0.0142694733102946	0.84338031290707	510.910558429863	0	8.64429067870111						158	10	4	NaN	NaN	NaN	0.0025796	1	23297	45.183	40.656	1	43274			9690	2580	8177	8389	9690	9690		
ILFEDFR	7	Unmodified	_ILFEDFR_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.25036	938.486168	0.13971	6.57E-05	-1.1792	-0.00055451	-1.0395	-0.00048881	470.249860139785	12.866	0.079835	12.866	12.822	12.901	0	711	55	0.847456455381371	0.0366903942438199	0.847456455381371	344.422239221058	0	14.9116661547796						190	10	2	NaN	NaN	NaN	0.036857	1	3041	58.687	45.134	1	47918			9691	2254	8178	8390	9691	9691		
ILFIFIDSDHTDNQR	15	Unmodified	_ILFIFIDSDHTDNQR_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.975847	1832.90571	0.25457	0.00015579	-0.35206	-0.00021545	-0.097492	-5.9663E-05	612.309904879857	15.189	0.22166	15.189	15.127	15.349	0	636	73	0.898312834727904	0.0487442756818737	0.898312834727904	543.760360069925	0	29.5055395753659						802	26	5	NaN	NaN	NaN	6.5583E-09	1	28054	165.39	150.93	1	437180			9692	554	8179	8391	9692	9692		
ILFIFIDSDHTDNQR	15	Unmodified	_ILFIFIDSDHTDNQR_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.460133	1832.90571	1.7175	0.0015758	2.3899	0.0021926	4.1074	0.0037684	917.963443798511	15.189	0.23943	15.189	15.092	15.331	0	222	46	1.17589687683038	0.0298923356935374	1.17589687683038	474.525658073369	0	12.0628607370406						496	28	4	NaN	NaN	NaN	4.9019E-06	1	28055	62.705	54.33	1	154990			9693	554	8179	8391	9693	9693		
ILFIGGITAPTVR	13	Unmodified	_ILFIGGITAPTVR_			0	0	0	P48651	P48651	P48651	PTDSS1	Phosphatidylserine synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.413737	1356.81292	0.51789	0.00035186	0.9397	0.00063844	1.4576	0.00099031	679.414236244751	15.908	0.079832	15.908	15.872	15.952	0	435	40	1.03374239103424	0.0261612711685622	1.03374239103424	418.25761127127	0	10.5849879831622						221	10	3	NaN	NaN	NaN	0.00012264	1	14115	76.85	67.873	1	56132			9694	1114	8180	8392	9694	9694		
ILFQPQTNVYDSLAK	15	Unmodified	_ILFQPQTNVYDSLAK_			0	0	0	O94855	O94855	O94855	SEC24D	Protein transport protein Sec24D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.964519	1735.91449	1.9154	0.0016644	5.292	0.0045985	7.2074	0.006263	868.964712036724	14.036	0.19509	14.036	13.93	14.125	1.7764E-15	297	46	1.12600091227925	0.0299994059513333	1.12600091227925	454.581073766571	0	12.1111466438442						426	23	4	NaN	NaN	NaN	0.0036582	1	25495	62.705	52.455	1	117620			9695	390	8181	8393	9695	9695		
ILFSSLILISK	11	Unmodified	_ILFSSLILISK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.394482	1232.77441	0.42884	0.00026477	-2.4164	-0.0014919	-1.9875	-0.0012271	617.392508689127	18.302	0.11526	18.302	18.266	18.381	0	543	52	0.961130371139249	0.0343530427274077	0.961130371139249	389.272756279468	0	13.913516865806						255	14	3	NaN	NaN	NaN	0.00054227	1	10417	81.099	65.517	1	65232			9696	1264	8182	8394	9696	9696		
ILFSSLILISK	11	Unmodified	_ILFSSLILISK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.394482	1232.77441	0.62181	0.0003839	-0.70005	-0.00043221	-0.078241	-4.8305E-05	617.393936920018	18.311	0.088649	18.311	18.266	18.355	0	480	28	1.00353128488872	0.0181467072344021	1.00353128488872	406.445778403095	0	7.34969866749844						177	11	3	NaN	NaN	NaN	2.8919E-05	1	10418	94.804	69.953	1	53106			9697	1264	8182	8394	9697	9697		
ILGADLIFACGETEKPEVR	19	Unmodified	_ILGADLIFACGETEKPEVR_			0	0	1	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.701507	2117.08269	0.99173	0.00070086	-0.62001	-0.00043816	0.37172	0.0002627	707.368201961263	14.232	0.12414	14.232	14.187	14.311	0	489	28	0.997481546940468	0.0181517240953996	0.997481546940468	603.179993369911	0	10.9764003686066						177	15	4	NaN	NaN	NaN	0.014296	1	33576	47.27	44.881	1	34725			9698	3311	8183	8395	9698	9698		
ILGADTSVDLEETGR	15	Unmodified	_ILGADTSVDLEETGR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.396667	1574.77878	2.5396	0.0020022	-0.23771	-0.00018741	2.3018	0.0018148	788.396882147753	10.365	0.37247	10.365	10.223	10.596	0	417	55	1.04580932352505	0.0361858246299764	1.04580932352505	422.548793235144	0	14.6205203813607						925	43	5	NaN	NaN	NaN	6.7591E-33	1	20824	236.34	223.75	1	715610			9699	840	8184	8396	9699	9699		
ILGAWLAEETSSLR	14	Unmodified	_ILGAWLAEETSSLR_			0	0	0	Q9UBB6	Q9UBB6	Q9UBB6	NCDN	Neurochondrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.417205	1544.81986	2.8299	0.0021887	-4.5945	-0.0035535	-1.7646	-0.0013648	773.413638331315	6.1614	0.11527	6.1614	6.1347	6.25	8.8818E-16	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	438.035398121771	0	8.10262386942463						270	14	4	NaN	NaN	NaN	0.040063	1	19892	30.918	18.322	1	90432			9700	3168	8185	8397	9700	9700		
ILGEELGFVK	10	Unmodified	_ILGEELGFVK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.818607	1103.62266	1.3525	0.00074771	-3.9289	-0.002172	-2.5764	-0.0014243	552.816122722742	12.884	0.3104	12.884	12.715	13.026	0	627	61	0.90440375274676	0.0406145874882705	0.90440375274676	366.771887935903	0	16.4708393630272						600	36	4	NaN	NaN	NaN	0.012085	1	6824	54.436	26.732	1	257440		+	9701	22	8186	8398	9701	9701		
ILGGVISAISEAAAQYNPEPPPPR	24	Unmodified	_ILGGVISAISEAAAQYNPEPPPPR_			0	0	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.435818	2446.28562	0.42141	0.00034405	-0.60005	-0.0004899	-0.17864	-0.00014585	816.769850715432	18.825	0.18622	18.825	18.736	18.922	0	459	28	1.01763759082241	0.0181241570782431	1.01763759082241	614.828871240312	0	10.9501212800058						320	22	4	NaN	NaN	NaN	0.00023445	1	36558	71.912	70.288	1	59571			9702	515	8187	8399	9702	9702		
ILGIPVIVTEQYPK	14	Unmodified	_ILGIPVIVTEQYPK_			0	0	0	Q96CN7	Q96CN7	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.466167	1568.91778	1.1313	0.00088859	1.1006	0.00086452	2.2319	0.0017531	785.968568315458	16.342	0.15076	16.342	16.28	16.431	0	351	67	1.08996939197032	0.0441357211751947	1.08996939197032	440.405562205501	0	17.8331770054293						496	18	4	NaN	NaN	NaN	0.0066318	1	20646	34.193	32.936	1	116510			9703	2493	8188	8400	9703	9703		
ILGLAIESQDAGIK	14	Unmodified	_ILGLAIESQDAGIK_			0	0	0	O00161	O00161	O00161	SNAP23	Synaptosomal-associated protein 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.408849	1426.80314	1.2727	0.00090925	0.49978	0.00035705	1.7725	0.0012663	714.409158421881	13.194	0.12417	13.194	13.159	13.283	0	444	37	1.02770517576159	0.0241538670444676	1.02770517576159	415.609156407906	0	9.76794565513478						235	15	3	NaN	NaN	NaN	0.0001604	1	16299	77.358	43.932	1	70028			9704	55	8189	8401	9704	9704		
ILGLGDLGVYGMGIPVGK	18	Unmodified	_ILGLGDLGVYGMGIPVGK_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.994765	1757.97498	1.1973	0.0010536	-1.8413	-0.0016203	-0.64396	-0.00056668	879.992386848049	19.171	0.12414	19.171	19.126	19.25	0	288	52	1.13199748998575	0.0339899718609518	1.13199748998575	456.956558793481	0	13.7208259845729						348	15	3	NaN	NaN	NaN	0.0012171	1	26094	69.641	51.543	1	94352			9705	817	8190	8402	9705	9705		
ILGLLDAYLK	10	Unmodified	_ILGLLDAYLK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.844625	1117.6747	1.0523	0.00058914	-0.80286	-0.00044948	0.24947	0.00013966	559.844100882967	17.787	0.42558	17.787	17.725	18.151	0	600	109	0.922661313351899	0.0730556649017897	0.922661313351899	374.118020322472	0	29.6223980900513						1931	49	5	NaN	NaN	NaN	0.00087177	1	7213	88.921	61.216	1	3107200			9706	859	8191	8403	9706	9706		
ILGNTFTDTVGNILK	15	Unmodified	_ILGNTFTDTVGNILK_			0	0	0	Q86XA9	Q86XA9	Q86XA9	HEATR5A	HEAT repeat-containing protein 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.445963	1604.87737	1.1504	0.00092429	0.93794	0.00075358	2.0884	0.0016779	803.446475910213	17.087	0.1064	17.087	17.034	17.14	0	333	31	1.10198982404297	0.0200285363602049	1.10198982404297	445.175161426176	0	8.09100657079807						255	13	4	NaN	NaN	NaN	0.00012577	1	21758	95.138	72.085	1	72395			9707	2186	8192	8404	9707	9707		
ILGPGLNK	8	Unmodified	_ILGPGLNK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.255446	810.496338	-1.4484	-0.00058843	-1.0217	-0.00041507	-2.4701	-0.0010035	406.254878871386	5.5228	0.24829	5.5228	5.4697	5.7179	0	834	34	0.763668499782291	0.0225454788167756	0.763668499782291	311.075492562841	0	9.1837569966458						313	29	3	NaN	NaN	NaN	0.033608	1	1096	42.229	24.534	1	112510			9708	1413	8193	8405	9708	9708		
ILGSGISSSSVLHGMVFK	18	Unmodified	_ILGSGISSSSVLHGMVFK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.997595	1817.97096	0.92903	0.00056392	-1.4276	-0.00086654	-0.49856	-0.00030262	607.330948401745	13.93	0.1596	13.93	13.877	14.036	0	603	64	0.920633820089869	0.0425832821931338	0.920633820089869	557.305889026823	0	25.7777994056398						733	19	5	NaN	NaN	NaN	2.1475E-07	1	27670	133.07	122.1	1	435930			9709	1174	8194	8406	9709	9709		
ILGSGISSSSVLHGMVFK	18	Unmodified	_ILGSGISSSSVLHGMVFK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.992754	1817.97096	1.6202	0.0014744	0.89631	0.00081564	2.5165	0.00229	909.993952703528	13.93	0.23054	13.93	13.877	14.107	0	108	76	1.25141139212444	0.0495818657609735	1.25141139212444	505.030219315256	0	20.0096792285187						1246	27	6	NaN	NaN	NaN	1.3345E-34	1	27671	238.02	218.13	1	1159300			9710	1174	8194	8406	9710	9710		
ILGSGISSSSVLHGMVFK	18	Oxidation (M)	_ILGSGISSSSVLHGM(Oxidation (M))VFK_	ILGSGISSSSVLHGM(1)VFK	ILGSGISSSSVLHGM(54)VFK	0	1	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.990211	1833.96587	1.0175	0.00093404	0.18128	0.00016641	1.1988	0.0011005	918.492107586319	11.82	0.13301	11.82	11.74	11.873	0	117	37	1.24546401832526	0.0237976511785354	1.24546401832526	502.596859047798	0	9.60334827747977						425	16	4	NaN	NaN	NaN	0.0037819	1	28086	54.199	46.623	1	124140			9711	1174	8194	8407	9711	9711	426	
ILGTAGTEEGQK	12	Unmodified	_ILGTAGTEEGQK_			0	0	0	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.314417	1202.61428	1.5477	0.00093218	-0.9231	-0.00055599	0.62456	0.00037618	602.313729475216	3.6431	0.097531	3.6431	3.6076	3.7051	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	372.974549845313	0	7.39357415483562						165	12	3	NaN	NaN	NaN	0.00856	1	9544	64.064	50.07	1	50380			9712	1576	8195	8408	9712	9712		
ILHCLGLAEEIQK	13	Unmodified	_ILHCLGLAEEIQK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.613193	1522.81775	0.59244	0.00030132	-0.06709	-3.4123E-05	0.52535	0.0002672	508.613342457519	9.7889	0.11526	9.7889	9.7534	9.8686	0	696	55	0.857641857947968	0.036644552172756	0.857641857947968	519.933890694626	0	22.2152690046281						368	14	4	NaN	NaN	NaN	0.001356	1	19210	87.895	76.54	1	122420			9713	1228	8196	8409	9713	9713		
ILHCLGLAEEIQK	13	Unmodified	_ILHCLGLAEEIQK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.416151	1522.81775	2.3481	0.0017903	1.1121	0.00084792	3.4603	0.0026382	762.416948465395	9.7711	0.088674	9.7711	9.7534	9.842	0	396	22	1.05987478976334	0.0140577073592631	1.05987478976334	428.359144307736	0	5.6815649862632						110	11	2	NaN	NaN	NaN	0.00026693	1	19211	66.664	62.681	1	30063			9714	1228	8196	8409	9714	9714		
ILHDFYIEK	9	Unmodified	_ILHDFYIEK_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.316232	1176.61791	1.3258	0.00078134	-0.045654	-2.6905E-05	1.2802	0.00075444	589.316816592028	8.2632	0.12419	8.2632	8.21	8.3342	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	385.380071807868	0	8.19951738884822						183	15	3	NaN	NaN	NaN	0.03043	1	8796	44.82	32.225	1	32817			9715	2909	8197	8410	9715	9715		
ILHLLTQEALSIHGVK	16	Unmodified	_ILHLLTQEALSIHGVK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.525079	1771.0356	1.7784	0.0015766	0.62056	0.00055015	2.3989	0.0021267	886.525387776937	12.236	0.088687	12.236	12.201	12.29	0	186	34	1.1997861197946	0.021878938463697	1.1997861197946	484.293024858535	0	8.83142179632102						167	11	2	NaN	NaN	NaN	0.00010048	1	26449	63.766	58.378	1	50136			9716	1259	8198	8411	9716	9716		
ILHLPTSWDWR	11	Unmodified	_ILHLPTSWDWR_			0	0	0	P53634	P53634	P53634	CTSC	Dipeptidyl peptidase 1;Dipeptidyl peptidase 1 exclusion domain chain;Dipeptidyl peptidase 1 heavy chain;Dipeptidyl peptidase 1 light chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.254216	1422.74082	-2.2169	-0.0010536	-0.4132	-0.00019637	-2.6301	-0.00125	475.253753403147	14.657	0.15961	14.657	14.568	14.728	0	786	37	0.796423123669906	0.0245420354301715	0.796423123669906	483.126249106644	0	14.8876911913164						410	19	4	NaN	NaN	NaN	0.068511	1	16176	10.702	6.809	1	124960			9717	1242	8199	8412	9717	9717		
ILHQHLGAPEER	12	Unmodified	_ILHQHLGAPEER_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.375675	1398.7368	2.0066	0.0014054	-1.2958	-0.00090754	0.71084	0.00049785	700.374298090095	3.4657	0.053308	3.4657	3.4479	3.5012	0	462	22	1.01562323939346	0.0141004608097721	1.01562323939346	410.802282599998	0	5.70339596583625						51	7	2	NaN	NaN	NaN	0.020526	1	15416	30.349	26.741	1	8814.8			9718	3136	8200	8413	9718	9718		
ILHTAWHPK	9	Unmodified	_ILHTAWHPK_			0	0	0	P63151	P63151	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.811451	1101.60835	1.3028	0.0007189	-0.11292	-6.2309E-05	1.1899	0.00065659	551.811205829038	3.5544	0.06206	3.5544	3.5278	3.5898	0	639	22	0.896281965493857	0.0142160854587913	0.896281965493857	363.486357932811	0	5.76532087715316						82	8	2	NaN	NaN	NaN	0.036768	1	6769	39.324	16.938	1	21060			9719	1428	8201	8414	9719	9719		
ILHTLLASGEDALDFTQESEPSYISDVGPPGR	32	Unmodified	_ILHTLLASGEDALDFTQESEPSYISDVGPPGR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1138.89484	3413.66269	1.1393	0.0012976	0.41537	0.00047306	1.5547	0.0017706	1139.22997827945	17.309	0.11527	17.309	17.264	17.38	0	318	67	1.11199926528787	0.0440203461634801	1.11199926528787	670.763255939705	0	26.5532825802406						499	14	6	NaN	NaN	NaN	7.6699E-05	1	38615	42.33	42.288	1	109800			9720	2239	8202	8415	9720	9720		
ILHTYYK	7	Unmodified	_ILHTYYK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.260728	936.506903	0.72663	0.00034098	1.2725	0.00059716	1.9992	0.00093813	469.261408471562	3.4213	0.12423	3.4213	3.3947	3.5189	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	350.227457974844	0	7.4462251686524						169	15	3	NaN	NaN	NaN	0.022073	1	3006	63.301	39.992	1	42950			9721	21	8203	8416	9721	9721		
ILHVDNHIGISIAGLTADAR	20	Unmodified	_ILHVDNHIGISIAGLTADAR_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.051639	2085.13309	1.1561	0.00080474	0.4661	0.00032443	1.6223	0.0011292	696.385614604121	13.62	0.18623	13.62	13.531	13.717	0	453	73	1.02166545906632	0.048374532794458	1.02166545906632	617.865703456563	0	29.2551387239276						497	22	4	NaN	NaN	NaN	0.042856	1	33109	24.832	20.982	1	93050			9722	841	8204	8417	9722	9722		
ILIANTGMDTDK	12	Unmodified	_ILIANTGMDTDK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.331753	1290.64895	2.1182	0.0013691	1.1569	0.00074776	3.2752	0.0021168	646.332840928916	8.0858	0.32832	8.0858	7.9881	8.3164	0	507	58	0.985374541851584	0.0383627278189489	0.985374541851584	398.893770675279	0	15.5297833495223						979	38	4	NaN	NaN	NaN	5.0957E-11	1	12095	143.39	119.82	1	1199700			9723	1461	8205	8418	9723	9723		
ILIDTGEPAIPEYISCLK	18	Unmodified	_ILIDTGEPAIPEYISCLK_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.53719	2031.05983	0.60033	0.00061026	1.1748	0.0011942	1.7751	0.0018045	1017.03840747703	17.149	0.21283	17.149	17.078	17.291	0	117	76	1.24546401832526	0.0496226666999102	1.24546401832526	502.230595759422	0	20.0102299971532						1039	25	5	NaN	NaN	NaN	0.027453	1	32176	42.941	37.847	1	218810			9724	1951	8206	8419	9724	9724		
ILIEDSDQNLK	11	Unmodified	_ILIEDSDQNLK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.343175	1286.6718	1.7482	0.0011264	0.090474	5.8296E-05	1.8387	0.0011847	644.343330369796	7.864	0.18621	7.864	7.7931	7.9793	0	519	31	0.97729762293174	0.0201978857694813	0.97729762293174	395.63707145653	0	8.17666204024857						249	22	3	NaN	NaN	NaN	0.00028352	1	11967	88.181	70.785	1	76029			9725	108	8207	8420	9725	9725		
ILIEDWK	7	Unmodified	_ILIEDWK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.760561	915.506569	-1.6391	-0.00075193	-1.5298	-0.0007018	-3.1688	-0.0014537	458.76028852919	10.968	0.28376	10.968	10.826	11.11	0	789	49	0.794378096728713	0.0327272734243672	0.794378096728713	322.967115249219	0	13.3057962340193						484	33	3	NaN	NaN	NaN	0.006951	1	2618	80.294	44.661	1	152640			9726	694	8208	8421	9726	9726		
ILILGLDGAGK	11	Unmodified	_ILILGLDGAGK_			0	0	0	P40616	P40616	P40616	ARL1	ADP-ribosylation factor-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.334424	1068.6543	1.0866	0.0005817	-1.7025	-0.00091143	-0.61593	-0.00032973	535.333458512561	13.54	0.15959	13.54	13.496	13.655	0	618	91	0.910492137470517	0.0609134691274659	0.910492137470517	369.389931576172	0	24.7128132875178						548	19	3	NaN	NaN	NaN	0.0045634	1	5937	74.269	31.434	1	223880			9727	1019	8209	8422	9727	9727		
ILILQGLK	8	Unmodified	_ILILQGLK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	449.310221	896.605889	-0.076989	-3.4592E-05	-1.7991	-0.00080835	-1.8761	-0.00084295	449.30941124602	12.866	0.10643	12.866	12.822	12.928	0	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	333.870773923843	0	8.30252423584898						174	13	3	NaN	NaN	NaN	0.0037206	1	2276	80.294	44.661	1	47371			9728	3308	8210	8423	9728	9728		
ILISLRPQELVDVIK	15	Unmodified	_ILISLRPQELVDVIK_			0	0	1	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.360862	1735.06076	-1.7893	-0.0010367	-0.80617	-0.00046706	-2.5955	-0.0015037	579.694695146142	16.785	0.14188	16.785	16.688	16.83	0	663	19	0.880024865079826	0.0121995944247819	0.880024865079826	532.915714526475	0	7.38769532293395						194	17	3	NaN	NaN	NaN	0.067898	1	25481	19.197	18.39	1	40511			9729	1758	8211	8424	9729	9729		
ILITTVPPNLR	11	Unmodified	_ILITTVPPNLR_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.887355	1235.76016	0.21569	0.00013349	0.047527	2.9414E-05	0.26321	0.0001629	618.887326969442	11.953	0.23944	11.953	11.828	12.068	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	381.067362017861	0	8.2017799298963						341	28	3	NaN	NaN	NaN	0.0047114	1	10506	52.591	24.855	1	93298			9730	1605	8212	8425	9730	9730		
ILLAELEQLK	10	Unmodified	_ILLAELEQLK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.360639	1168.70673	1.2099	0.00070824	0.32899	0.00019258	1.5389	0.00090081	585.360781359258	15.145	0.266	15.145	15.083	15.349	0	552	127	0.955063035883597	0.0850546754260099	0.955063035883597	387.050103478527	0	34.4693697568481						2015	31	5	NaN	NaN	NaN	2.4758E-07	1	8590	114.64	49.326	1	2102600			9731	588	8213	8426	9731	9731		
ILLAEVPTMAVEK	13	Unmodified	_ILLAEVPTMAVEK_			0	0	0	O15160	O15160	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.404721	1412.79489	1.8129	0.0012824	-1.1081	-0.00078388	0.70478	0.00049857	707.404277753793	14.294	0.1773	14.294	14.205	14.382	0	432	40	1.035754240522	0.0261540485744427	1.035754240522	418.904117069399	0	10.5778361287187						309	21	2	NaN	NaN	NaN	0.005578	1	15864	64.906	54.656	1	135870			9732	151	8214	8427	9732	9732		
ILLANFLAQTEALMR	15	Unmodified	_ILLANFLAQTEALMR_			0	0	0	P06744;CON__Q3ZBD7	P06744;CON__Q3ZBD7	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.479282	1702.94401	1.5032	0.0012815	0.66111	0.00056359	2.1643	0.001845	852.48018351725	20.093	0.062067	20.093	20.084	20.146	0	249	115	1.15795408347545	0.0758158757401914	1.15795408347545	467.55269478564	0	30.6125411324321						551	8	4	NaN	NaN	NaN	3.8499E-33	1	24591	253.1	217.77	1	483460		+	9733	546;42	8215	8428	9733	9733		
ILLANFLAQTEALMR	15	Oxidation (M)	_ILLANFLAQTEALM(Oxidation (M))R_	ILLANFLAQTEALM(1)R	ILLANFLAQTEALM(110)R	0	1	0	P06744;CON__Q3ZBD7	P06744;CON__Q3ZBD7	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.986919	1718.93893	-0.78676	-0.00045159	-0.079528	-4.5648E-05	-0.86629	-0.00049724	573.986864819483	18.807	0.10641	18.807	18.763	18.869	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	536.648633343199	0	11.0785222391906						259	13	5	NaN	NaN	NaN	0.00020806	1	25038	113.46	95.728	1	85318		+	9734	546;42	8215	8429	9734	9734	19	
ILLANFLAQTEALMR	15	Oxidation (M)	_ILLANFLAQTEALM(Oxidation (M))R_	ILLANFLAQTEALM(1)R	ILLANFLAQTEALM(150)R	0	1	0	P06744;CON__Q3ZBD7	P06744;CON__Q3ZBD7	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.47674	1718.93893	1.9525	0.00168	-1.0581	-0.00091047	0.89436	0.00076957	860.476430190142	18.807	0.13299	18.807	18.763	18.896	0	327	79	1.10599442759226	0.0520097355297813	1.10599442759226	446.539152643685	0	20.9986439834512						678	16	5	NaN	NaN	NaN	7.6475E-12	1	25039	145.95	119.37	1	275540		+	9735	546;42	8215	8429	9735	9735	19	
ILLDHEK	7	Unmodified	_ILLDHEK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.25036	866.486168	-0.68116	-0.0002958	1.951	0.0008472	1.2698	0.00055141	434.25116842134	3.3681	0.21289	3.3681	3.3326	3.5455	0	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	334.045728468737	0	8.30687491420298						275	25	3	NaN	NaN	NaN	0.032518	1	1813	46.835	13.023	1	65712			9736	1250	8216	8430	9736	9736		
ILLDQVEEAVADFDECIR	18	Unmodified	_ILLDQVEEAVADFDECIR_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.349021	2134.02524	0.38056	0.00027109	-1.2741	-0.00090759	-0.89352	-0.0006365	712.682889362851	20.084	0.026595	20.084	20.084	20.111	0	492	22	0.995464410099171	0.0141199586984805	0.995464410099171	601.929108693217	0	8.53793874289772						61	4	3	NaN	NaN	NaN	0.040495	1	33795	29.217	25.713	1	32301			9737	389	8217	8431	9737	9737		
ILLELLNQMDGFDQNVNVK	19	Unmodified	_ILLELLNQMDGFDQNVNVK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.075	2202.13545	0.50835	0.00056024	-0.035434	-3.9051E-05	0.47292	0.00052119	1102.07540700531	19.552	0.09754	19.552	19.499	19.596	0	96	76	1.2593374219024	0.0495411151226253	1.2593374219024	507.557092982322	0	19.9668047160525						467	12	4	NaN	NaN	NaN	2.2293E-10	1	34709	110.91	110.43	1	104220			9738	1068	8218	8432	9738	9738		
ILLGSEQGSLQLWNVK	16	Unmodified	_ILLGSEQGSLQLWNVK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.998894	1783.98323	1.3076	0.0011677	-0.3132	-0.00027969	0.99442	0.00088801	893.499160584533	15.934	0.070948	15.934	15.908	15.978	0	270	34	1.14398322290989	0.021963270168132	1.14398322290989	461.742184063034	0	8.86496246929539						158	9	2	NaN	NaN	NaN	0.0016047	1	26817	84.999	78.623	1	63128			9739	2329	8219	8433	9739	9739		
ILLITEDLK	9	Unmodified	_ILLITEDLK_			0	0	0	Q08752	Q08752	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.328808	1056.64306	0.045077	2.386E-05	-0.97171	-0.00051436	-0.92664	-0.0004905	529.328199785278	13.345	0.10646	13.345	13.3	13.407	0	639	31	0.896281965493857	0.0203101032426732	0.896281965493857	363.677402193679	0	8.24107353483436						256	13	3	NaN	NaN	NaN	0.0017759	1	5644	67.464	33.651	1	89269			9740	1578	8220	8434	9740	9740		
ILLLGLDNAGK	11	Unmodified	_ILLLGLDNAGK_			0	0	0	P36405	P36405	P36405	ARL3	ADP-ribosylation factor-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.845156	1125.67576	1.2631	0.00071221	3.6948	0.0020833	4.9579	0.0027955	563.847376027621	13.806	0.1596	13.806	13.744	13.903	0	582	94	0.934820374997243	0.0627653499530866	0.934820374997243	379.01539757075	0	25.4477060004245						800	19	4	NaN	NaN	NaN	3.0684E-05	1	7421	100.84	54.001	1	309450			9741	983	8221	8435	9741	9741		
ILLSHFNWDK	10	Unmodified	_ILLSHFNWDK_			0	0	0	Q9Y4X5	Q9Y4X5	Q9Y4X5	ARIH1	E3 ubiquitin-protein ligase ARIH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	424.896029	1271.66626	-1.4846	-0.00063081	-0.71877	-0.0003054	-2.2034	-0.00093621	424.895748530919	11.101	0.062069	11.101	11.075	11.137	0	822	25	0.771863999559055	0.0163841521747742	0.771863999559055	468.76255530953	0	9.95029829661041						108	8	3	NaN	NaN	NaN	0.040396	1	11545	15.879	11.677	1	22854			9742	3417	8222	8436	9742	9742		
ILLSQTTGVAIPLHASSLDDVSLASTPK	28	Unmodified	_ILLSQTTGVAIPLHASSLDDVSLASTPK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	945.521839	2833.54369	0.6434	0.00060835	0.93317	0.00088233	1.5766	0.0014907	945.858372999341	15.89	0.053227	15.89	15.872	15.925	0	165	31	1.21370334790578	0.0198722094440249	1.21370334790578	732.720204497756	0	11.996975531766						152	7	4	NaN	NaN	NaN	0.059613	1	37960	7.1882	4.692	1	25467			9743	667	8223	8437	9743	9743		
ILLSQTTGVAIPLHASSLDDVSLASTPK	28	Unmodified	_ILLSQTTGVAIPLHASSLDDVSLASTPK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	945.521839	2833.54369	1.3732	0.0012984	1.0997	0.0010397	2.4728	0.0023381	945.857745032851	15.89	0.053227	15.89	15.872	15.925	0	342	28	1.09598084995137	0.0180318910804229	1.09598084995137	661.65040512901	0	10.8859639647294						162	7	4	NaN	NaN	NaN	0.022206	1	37961	11.68	10.945	1	30031			9744	667	8223	8437	9744	9744		
ILLTEPPMNPTK	12	Unmodified	_ILLTEPPMNPTK_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.375963	1352.73737	1.5537	0.0010524	0.85941	0.00058214	2.4131	0.0016346	677.878083008931	10.525	0.1951	10.525	10.454	10.649	0	498	64	0.991429299781895	0.0423540410957373	0.991429299781895	401.14969991207	0	17.1371885815319						460	23	4	NaN	NaN	NaN	2.4656E-05	1	13983	108.3	93.54	1	119220			9745	1331	8224	8438	9745	9745		
ILLTEPPMNPTK	12	Oxidation (M)	_ILLTEPPM(Oxidation (M))NPTK_	ILLTEPPM(1)NPTK	ILLTEPPM(50)NPTK	0	1	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.37342	1368.73229	1.5578	0.0010677	-1.0237	-0.00070162	0.53413	0.00036608	685.373017594391	8.21	0.14193	8.21	8.139	8.281	0	501	31	0.98941132619024	0.0201783433575858	0.98941132619024	400.285878372457	0	8.16354703164092						318	17	3	NaN	NaN	NaN	0.025572	1	14459	50.297	44.431	1	109310			9746	1331	8224	8439	9746	9746	478	
ILLTLVANPYSYTDK	15	Unmodified	_ILLTLVANPYSYTDK_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.969271	1709.92399	1.4049	0.0012026	1.8391	0.0015742	3.244	0.0027767	855.970303764827	16.049	0.079795	16.049	16.014	16.094	0	237	46	1.16593139812432	0.0299169932793457	1.16593139812432	470.758214869363	0	12.0793302016743						244	10	3	NaN	NaN	NaN	0.0019087	1	24761	43.613	43.323	1	40281			9747	253	8225	8440	9747	9747		
ILLTQENPFFR	11	Unmodified	_ILLTQENPFFR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.379894	1376.74524	1.442	0.00099407	-3.704	-0.0025535	-2.2621	-0.0015594	689.379742319288	15.42	0.35481	15.42	15.322	15.677	-3.5527E-15	468	91	1.01159370163332	0.0604514820612093	1.01159370163332	409.236388861129	0	24.455417407294						1693	41	6	NaN	NaN	NaN	5.6755E-17	1	14714	196.32	160.11	1	833780			9748	1581	8226	8441	9748	9748		
ILMAIDSELVDRDVVHTSEEAR	22	Unmodified	_ILMAIDSELVDRDVVHTSEEAR_			0	0	1	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	625.31934	2497.24825	1.2718	0.00079527	-2.3601	-0.0014758	-1.0883	-0.00068054	625.568630219299	12.946	0.088652	12.946	12.91	12.999	0	603	31	0.920633820089869	0.0202735302015807	0.920633820089869	741.541998508089	0	16.3297000114842						214	11	4	NaN	NaN	NaN	1.0499E-05	1	36814	44.853	40.547	1	41053			9749	209	8227	8442	9749	9749		
ILMAIDSELVDRDVVHTSEEAR	22	Unmodified	_ILMAIDSELVDRDVVHTSEEAR_			0	0	1	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.423361	2497.24825	2.3456	0.0019549	-0.52222	-0.00043523	1.8234	0.0015197	833.757674729969	12.946	0.079808	12.946	12.919	12.999	0	444	25	1.02770517576159	0.01610257649452	1.02770517576159	620.839870643533	0	9.7276161915571						161	10	4	NaN	NaN	NaN	0.0070897	1	36815	16.766	15.75	1	32489			9750	209	8227	8442	9750	9750		
ILMDKPEMNVVLK	13	Unmodified	_ILMDKPEMNVVLK_			0	0	1	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.619179	1528.83571	0.27802	0.00014196	-2.1056	-0.0010752	-1.8276	-0.0009332	510.617843228822	10.835	0.12412	10.835	10.791	10.915	0	687	67	0.863749705078866	0.0448189089977539	0.863749705078866	523.618157186609	0	27.1699016491999						423	15	4	NaN	NaN	NaN	0.040621	1	19398	34.193	16.723	1	151910			9751	1277	8228	8443	9751	9751		
ILMDKPEMNVVLK	13	Unmodified	_ILMDKPEMNVVLK_			0	0	1	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.42513	1528.83571	2.3773	0.0018196	-1.3059	-0.00099954	1.0714	0.00082009	765.424417085974	10.826	0.070942	10.826	10.8	10.871	0	318	34	1.11199926528787	0.02201470966097	1.11199926528787	449.409853079112	0	8.8971528517643						189	9	3	NaN	NaN	NaN	0.0095019	1	19399	70.195	56.397	1	36957			9752	1277	8228	8443	9752	9752		
ILMEHIHK	8	Unmodified	_ILMEHIHK_			0	0	0	P84098	P84098	P84098	RPL19	60S ribosomal protein L19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.786587	1019.55862	1.5011	0.00076672	1.0103	0.00051604	2.5113	0.0012828	510.787520077264	3.6076	0.27485	3.6076	3.5455	3.8204	0	669	43	0.875957769340875	0.0284736285227984	0.875957769340875	355.596870795839	0	11.5589284749755						690	32	5	NaN	NaN	NaN	0.001484	1	4733	85.813	38.977	1	459510			9753	1485	8229	8444	9753	9753		
ILMGNEELTR	10	Unmodified	_ILMGNEELTR_			0	0	0	Q96FV9	Q96FV9	Q96FV9	THOC1	THO complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.308081	1174.60161	1.4648	0.00086178	-0.74586	-0.00043879	0.71898	0.00042298	588.308016912913	8.0858	0.11538	8.0858	8.0414	8.1567	0	579	40	0.936845902828289	0.0263318671085498	0.936845902828289	379.645182499429	0	10.6706625537844						272	14	4	NaN	NaN	NaN	0.0094893	1	8727	52.591	29.538	1	74479			9754	2528	8230	8445	9754	9754		
ILMPSLSPTMEEGNIVK	17	Unmodified	_ILMPSLSPTMEEGNIVK_			0	0	0	O00330	O00330	O00330	PDHX	Pyruvate dehydrogenase protein X component, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.98628	1857.95801	1.4037	0.0013054	-1.0047	-0.00093435	0.39897	0.00037103	929.986061589094	15.003	0.18621	15.003	14.932	15.118	0	240	76	1.16393748060522	0.0498137386052175	1.16393748060522	469.651963488639	0	20.0999800543284						462	22	3	NaN	NaN	NaN	0.0059641	1	28657	58.338	54.833	1	153410			9755	73	8231	8446	9755	9755		
ILMVGLDAAGK	11	Unmodified	_ILMVGLDAAGK_			0	0	0	P61204;P84077;P18085;P84085	P61204;P18085;P84085	P61204	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.312635	1086.61072	0.82259	0.00044775	-1.0612	-0.00057761	-0.23858	-0.00012986	544.312393610164	11.42	0.33707	11.42	11.314	11.651	0	618	73	0.910492137470517	0.0486767350885208	0.910492137470517	369.312243720812	0	19.7441729727483						969	39	4	NaN	NaN	NaN	0.019314	1	6389	47.561	35.494	1	401700			9756	1334;751;1483	8232	8447	9756	9756		
ILNDVQDR	8	Unmodified	_ILNDVQDR_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.759081	971.503609	1.2543	0.00061055	-1.5234	-0.00074151	-0.26903	-0.00013095	486.758035944519	4.1041	0.33694	4.1041	3.98	4.3169	0	717	58	0.84338031290707	0.0387099225361016	0.84338031290707	342.59745572981	0	15.7247220137895						652	39	2	NaN	NaN	NaN	0.029851	1	3661	39.324	30.561	1	225170			9757	1705;51	8233	8448	9757	9757		
ILNEMRDQYEK	11	Unmodified	_ILNEMRDQYEK_			0	0	1	Q04695;CON__Q04695;P02533;CON__P02533;CON__Q6IFX2	Q04695	Q04695	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.238014	1437.69221	-1.0775	-0.00051746	0.15721	7.5498E-05	-0.92029	-0.00044196	480.23797538814	5.31	0.097559	5.31	5.2745	5.3721	0	822	28	0.771863999559055	0.0184360231604151	0.771863999559055	468.181370080121	0	11.1825432809445						183	12	3	NaN	NaN	NaN	0.0059102	1	16601	59.645	48.943	1	55149		+	9758	36	8234	8449	9758	9758		
ILNEMRDQYEK	11	Unmodified	_ILNEMRDQYEK_			0	0	1	Q04695;CON__Q04695;P02533;CON__P02533;CON__Q6IFX2	Q04695	Q04695	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.853383	1437.69221	1.884	0.0013562	-1.2549	-0.00090334	0.62915	0.00045289	719.851810761885	5.31	0.15081	5.31	5.2745	5.4254	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.248959915974	0	8.14948705923183						255	18	4	NaN	NaN	NaN	0.066001	1	16602	54.584	38.704	1	61848		+	9759	36	8234	8449	9759	9759		
ILNFLMHPK	9	Unmodified	_ILNFLMHPK_			0	0	0	P35659	P35659	P35659	DEK	Protein DEK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	371.547684	1111.62122	-1.0311	-0.00038309	-2.0642	-0.00076694	-3.0952	-0.00115	371.546970215453	10.871	0.12416	10.871	10.835	10.959	0	870	28	0.739054571787983	0.0184746054874579	0.739054571787983	449.529382352895	0	11.2371647656526						136	15	3	NaN	NaN	NaN	0.068687	1	7042	12.827	7.5189	1	32734			9760	979	8235	8450	9760	9760		
ILNHDMTLTEFK	12	Unmodified	_ILNHDMTLTEFK_			0	0	0	Q7KZN9	Q7KZN9	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.918393	1460.73335	-1.098	-0.00053573	-0.87679	-0.0004278	-1.9748	-0.00096354	487.918157387224	9.7977	0.070919	9.7977	9.78	9.8509	0	798	28	0.788241307691771	0.0184180594239544	0.788241307691771	478.043406409882	0	11.1699701355029						112	9	3	NaN	NaN	NaN	0.029841	1	17294	32.051	28.948	1	18688			9761	2109	8236	8451	9761	9761		
ILNIFGVIK	9	Unmodified	_ILNIFGVIK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.828778	1015.643	-1.2552	-0.0006387	-0.40844	-0.00020783	-1.6637	-0.00084653	508.828532252552	16.945	0.34587	16.945	16.883	17.229	0	711	103	0.847456455381371	0.0691983364982519	0.847456455381371	344.044374215289	0	28.0926509274938						1585	40	4	NaN	NaN	NaN	0.00059102	1	4654	85.813	47.491	1	1457100			9762	495	8237	8452	9762	9762		
ILNLSGNELK	10	Unmodified	_ILNLSGNELK_			0	0	0	Q9UBU9	Q9UBU9	Q9UBU9	NXF1	Nuclear RNA export factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.819138	1099.62372	-0.2455	-0.00013523	-1.8791	-0.001035	-2.1246	-0.0011703	550.818138847919	9.3987	0.097525	9.3987	9.3544	9.4519	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	366.788328016925	0	10.7028110949062						184	12	2	NaN	NaN	NaN	0.057274	1	6714	34.953	21.305	1	61505			9763	3191	8238	8453	9763	9763		
ILNNSGLPITSAIDLEDAAK	20	Unmodified	_ILNNSGLPITSAIDLEDAAK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.05205	2054.08955	1.477	0.0015184	-0.91485	-0.00094051	0.56217	0.00057794	1028.55221609026	16.174	0.16848	16.174	16.111	16.28	0	153	97	1.22165005014568	0.063591139351076	1.22165005014568	492.590174135039	0	25.6410339463882						833	20	4	NaN	NaN	NaN	0.00067897	1	32607	49.485	46.77	1	230990			9764	2557	8239	8454	9764	9764		
ILNPEEIEK	9	Unmodified	_ILNPEEIEK_			0	0	0	O14818	O14818	O14818	PSMA7	Proteasome subunit alpha type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.797872	1083.58119	1.8482	0.0010032	-0.33918	-0.00018411	1.5091	0.00081911	542.797809804323	7.7664	0.33704	7.7664	7.6245	7.9615	0	627	55	0.90440375274676	0.0365480561699901	0.90440375274676	366.855521429351	0	14.8250780282036						871	39	4	NaN	NaN	NaN	0.0036279	1	6306	72.038	31.835	1	508610			9765	121	8240	8455	9765	9765		
ILNPHGIPLGPLDFSTK	17	Unmodified	_ILNPHGIPLGPLDFSTK_			0	0	0	Q86Y07	Q86Y07	Q86Y07	VRK2	Serine/threonine-protein kinase VRK2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.0086	1818.00397	-1.727	-0.0010483	0.6544	0.00039723	-1.0726	-0.00065107	607.343178804763	14.834	0.088638	14.834	14.79	14.879	0	699	28	0.85560534332665	0.0183286333597692	0.85560534332665	517.940806763676	0	11.0952406074563						193	11	3	NaN	NaN	NaN	0.00053451	1	27672	67.887	66.299	1	50119			9766	2191	8241	8456	9766	9766		
ILPALCHDITDWVVGTR	17	Unmodified	_ILPALCHDITDWVVGTR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.012015	1965.01422	-1.3805	-0.0009056	-0.84792	-0.00055625	-2.2284	-0.0014618	656.345682852063	16.706	0.13303	16.706	16.644	16.777	0	684	31	0.86578508874114	0.0203524260142245	0.86578508874114	523.80647298291	0	12.3133704031071						341	16	4	NaN	NaN	NaN	0.0021337	1	31021	34.338	33.067	1	79094			9767	2192	8242	8457	9767	9767		
ILPEAHQR	8	Unmodified	_ILPEAHQR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.272158	962.529764	1.3064	0.00063002	0.16479	7.9473E-05	1.4712	0.0007095	482.272286968193	2.3483	0.11527	2.3483	2.3128	2.4281	0	708	16	0.849494101904619	0.0101882329112165	0.849494101904619	345.125884665556	0	4.13919636261011						88	14	2	NaN	NaN	NaN	0.01958	1	3498	53.679	43.6	1	14166			9768	858	8243	8458	9768	9768		
ILPEIIPILEEGLR	14	Unmodified	_ILPEIIPILEEGLR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.984724	1603.95489	1.1014	0.00088442	-0.50271	-0.00040367	0.59871	0.00048076	802.984063930056	20.022	0.053202	20.022	19.995	20.049	0	393	67	1.0618830335572	0.0441539797393529	1.0618830335572	428.975179912018	0	17.8371447739119						277	7	4	NaN	NaN	NaN	4.7587E-05	1	21725	74.524	64.274	1	133890			9769	2420	8244	8459	9769	9769		
ILPEQGLMLTGSADK	15	Unmodified	_ILPEQGLMLTGSADK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.918723	1571.82289	1.3944	0.0010972	0.34787	0.00027374	1.7422	0.001371	787.420987406231	12.103	0.16849	12.103	12.032	12.201	0	375	34	1.07392668217569	0.0220724150021865	1.07392668217569	433.916441178559	0	8.91828457652394						416	20	3	NaN	NaN	NaN	0.0039825	1	20728	61.042	45.163	1	103940			9770	3330	8245	8460	9770	9770		
ILPIMFASLYK	11	Unmodified	_ILPIMFASLYK_			0	0	0	Q15172	Q15172	Q15172	PPP2R5A	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.375235	1294.73592	0.15172	9.837E-05	-0.35311	-0.00022895	-0.20139	-0.00013058	648.375097779971	18.124	0.070919	18.124	18.089	18.16	0	513	43	0.981336640919867	0.0282809550509913	0.981336640919867	397.245897740726	0	11.4481543944648						221	9	3	NaN	NaN	NaN	0.058841	1	12216	18.507	11.817	1	45289			9771	1821	8246	8461	9771	9771		
ILPIMFPSLYR	11	Unmodified	_ILPIMFPSLYR_			0	0	0	Q13362	Q13362	Q13362	PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.386134	1348.75771	0.43621	0.00029461	-1.7996	-0.0012154	-1.3633	-0.00092079	675.385039132456	18.417	0.12418	18.417	18.364	18.488	0	510	31	0.983355730988811	0.0201895069753196	0.983355730988811	397.894877057559	0	8.16927297278244						220	15	3	NaN	NaN	NaN	0.02796	1	13866	32.14	30.766	1	48066			9772	1656	8247	8462	9772	9772		
ILPTLEAVAALGNK	14	Unmodified	_ILPTLEAVAALGNK_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.421759	1408.82897	1.9837	0.0013993	0.69814	0.00049248	2.6818	0.0018918	705.422356022549	15.854	0.33696	15.854	15.757	16.094	-1.7764E-15	348	52	1.09197348738011	0.034074328312536	1.09197348738011	441.653672639187	0	13.7815179726121						1008	39	5	NaN	NaN	NaN	1.1307E-05	1	15728	116.13	102.14	1	854000			9773	1605	8248	8463	9773	9773		
ILPVFDEPPNPTNVEESLK	19	Unmodified	_ILPVFDEPPNPTNVEESLK_			0	0	0	Q9NYL9	Q9NYL9	Q9NYL9	TMOD3	Tropomodulin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.55443	2137.0943	1.3569	0.0014513	-0.56226	-0.00060136	0.79463	0.0008499	1070.05567445631	16.182	0.27491	16.182	16.094	16.369	0	162	79	1.21569043230068	0.0516323532259755	1.21569043230068	490.059302708632	0	20.8136169758626						1419	32	4	NaN	NaN	NaN	2.2003E-10	1	33837	112.68	102.66	1	343730			9774	3119	8249	8464	9774	9774		
ILQAVNFPFLVK	12	Unmodified	_ILQAVNFPFLVK_			0	0	0	P17612	P17612	P17612	PRKACA	cAMP-dependent protein kinase catalytic subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.918655	1387.82276	1.1242	0.00078123	-1.8769	-0.0013043	-0.75273	-0.00052309	694.917265250417	17.796	0.13301	17.796	17.743	17.876	0	468	37	1.01159370163332	0.024180571015918	1.01159370163332	409.203903910542	0	9.78138163822445						373	16	4	NaN	NaN	NaN	8.2999E-08	1	15088	111.39	70.367	1	200170			9775	738	8250	8465	9775	9775		
ILQAVNFPFLVR	12	Unmodified	_ILQAVNFPFLVR_			0	0	0	P22694	P22694	P22694	PRKACB	cAMP-dependent protein kinase catalytic subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.921729	1415.82891	0.51482	0.00036496	-0.78369	-0.00055558	-0.26888	-0.00019061	709.422109955626	18.053	0.088688	18.053	18.018	18.107	0	462	28	1.01562323939346	0.0181341741775967	1.01562323939346	410.753729185901	0	7.33409731112783						180	11	3	NaN	NaN	NaN	0.00044418	1	15980	58.916	46.958	1	55196			9776	810	8251	8466	9776	9776		
ILQDIASGSHPFSQVLK	17	Unmodified	_ILQDIASGSHPFSQVLK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.003626	1838.98905	-0.20758	-0.00012745	-0.31722	-0.00019477	-0.52479	-0.00032222	614.337724337514	12.086	0.097559	12.086	12.05	12.148	0	660	40	0.882057989648486	0.0264306247374108	0.882057989648486	533.90784167123	0	15.9984014352581						401	12	4	NaN	NaN	NaN	0.00010515	1	28202	62.398	49.223	1	170210			9777	877	8252	8467	9777	9777		
ILQDIASGSHPFSQVLK	17	Unmodified	_ILQDIASGSHPFSQVLK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.5018	1838.98905	1.4539	0.0013383	-0.3912	-0.0003601	1.0627	0.00097824	921.002846429291	12.086	0.097559	12.086	12.05	12.148	0	156	55	1.21966378336455	0.0357552678527835	1.21966378336455	492.175295179824	0	14.4284513074023						357	12	3	NaN	NaN	NaN	0.0059736	1	28203	55.782	52.494	1	108570			9778	877	8252	8467	9778	9778		
ILQDSLGGNCR	11	Unmodified	_ILQDSLGGNCR_			0	0	0	P33176;O60282;Q12840	P33176	P33176	KIF5B;KIF5C;KIF5A	Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.806236	1231.59792	2.0095	0.0012395	1.9195	0.001184	3.9291	0.0024235	616.808282800767	5.576	0.15085	5.576	5.4962	5.6471	0	567	52	0.944945209309785	0.0344053845172715	0.944945209309785	382.721543897887	0	13.9348628376757						243	18	2	NaN	NaN	NaN	0.012464	1	10352	49.16	28.072	1	143940			9779	944	8253	8468	9779	9779		
ILQDVADEEIAALPR	15	Unmodified	_ILQDVADEEIAALPR_			0	0	0	O60783	O60783	O60783	MRPS14	28S ribosomal protein S14, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.946327	1651.8781	2.0723	0.0017137	0.46849	0.00038742	2.5408	0.0021011	826.946800818516	14.205	0.11527	14.205	14.161	14.276	1.7764E-15	210	40	1.18386433251387	0.0258889011438428	1.18386433251387	478.13387800629	0	10.4558946166933						383	14	4	NaN	NaN	NaN	2.8531E-12	1	23116	146.58	122.77	1	158550			9780	281	8254	8469	9780	9780		
ILQEDPTNTAAR	12	Unmodified	_ILQEDPTNTAAR_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.843873	1327.67319	1.8102	0.0012035	-1.2855	-0.00085463	0.52475	0.00034888	664.842896215408	4.6716	0.15958	4.6716	4.6007	4.7603	0	558	73	0.951016745717027	0.0485152092692018	0.951016745717027	384.871544882246	0	19.6338535844026						356	19	3	NaN	NaN	NaN	0.003972	1	13215	45.939	26.383	1	103580			9781	1788	8255	8470	9781	9781		
ILQEGVDPK	9	Unmodified	_ILQEGVDPK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.779482	997.544411	1.3558	0.00067761	-0.12005	-5.9997E-05	1.2358	0.00061761	499.779318683527	4.5209	0.22166	4.5209	4.4677	4.6893	0	675	52	0.871889544407995	0.0346015342671149	0.871889544407995	354.049384105087	0	14.0506925159668						474	26	3	NaN	NaN	NaN	0.071673	1	4236	34.781	8.5577	1	199840			9782	1026	8256	8471	9782	9782		
ILQEHEQIK	9	Unmodified	_ILQEHEQIK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	379.880267	1136.61897	-0.053755	-2.042E-05	0.91993	0.00034946	0.86618	0.00032904	379.880584354241	3.1198	0.20397	3.1198	3.0932	3.2971	0	876	28	0.734948245421186	0.0184823364857525	0.734948245421186	446.911483659689	0	11.2388436489315						302	24	3	NaN	NaN	NaN	0.050324	1	7715	13.995	3.9157	1	81706			9783	1728	8257	8472	9783	9783		
ILQEHEQIK	9	Unmodified	_ILQEHEQIK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.316763	1136.61897	2.3931	0.0013624	-0.59219	-0.00033715	1.8009	0.0010253	569.316366105655	3.1198	0.21282	3.1198	3.0932	3.306	0	591	34	0.928742107665821	0.0222962488144068	0.928742107665821	376.507169434427	0	9.03878209120523						291	25	3	NaN	NaN	NaN	0.0010473	1	7716	90.761	68.375	1	82851			9784	1728	8257	8472	9784	9784		
ILQEYITQEGHK	12	Unmodified	_ILQEYITQEGHK_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.924424	1457.75144	-0.93097	-0.00045331	0.08456	4.1174E-05	-0.84641	-0.00041214	486.924178852271	6.5959	0.12414	6.5959	6.5515	6.6757	0	810	28	0.78005493425781	0.0184231892400387	0.78005493425781	473.0876929723	0	11.1732952539487						285	15	4	NaN	NaN	NaN	0.0073346	1	17196	47.334	40.194	1	98409			9785	2787	8258	8473	9785	9785		
ILQEYITQEGHK	12	Unmodified	_ILQEYITQEGHK_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.882998	1457.75144	2.0374	0.001487	-0.97903	-0.00071458	1.0583	0.00077246	729.882257111786	6.587	0.15962	6.587	6.5515	6.7111	0	417	40	1.04580932352505	0.0261396123563653	1.04580932352505	422.844353884344	0	10.5688362581803						404	19	4	NaN	NaN	NaN	3.4939E-07	1	17199	108.4	45.432	1	155510			9786	2787	8258	8473	9786	9786		
ILQEYVEHQVDDAMMANAAQK	21	Unmodified	_ILQEYVEHQVDDAMMANAAQK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	802.047237	2403.11988	1.6038	0.0012863	1.6988	0.0013625	3.3026	0.0026488	802.383589161674	13.327	0.15963	13.327	13.256	13.416	0	384	37	1.06790610341098	0.0240906221251305	1.06790610341098	645.265166794435	0	14.5563727504717						378	19	4	NaN	NaN	NaN	2.5165E-08	1	36364	130.12	122.05	1	239920			9787	581	8259	8474	9787	9787		
ILQIAESYLIVSDK	14	Unmodified	_ILQIAESYLIVSDK_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.450714	1590.88687	1.6695	0.0013297	3.1084	0.0024757	4.7779	0.0038054	796.453550866862	15.597	0.097474	15.597	15.553	15.65	1.7764E-15	270	25	1.14398322290989	0.0159743847562432	1.14398322290989	462.174164311943	0	6.45372045433896						182	12	3	NaN	NaN	NaN	0.0036445	1	21306	32.759	3.4417	1	42610			9788	2739	8260	8475	9788	9788		
ILQIITELIK	10	Unmodified	_ILQIITELIK_			0	0	0	Q7Z478	Q7Z478	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.386657	1182.75876	0.18982	0.00011245	-1.2365	-0.00073251	-1.0467	-0.00062007	592.385734266575	18.506	0.088737	18.506	18.479	18.568	0	594	55	0.926715457081489	0.0364620403593936	0.926715457081489	375.509882255855	0	14.7746067873779						286	11	3	NaN	NaN	NaN	0.00081129	1	8958	95.311	75.077	1	79155			9789	2136	8261	8476	9789	9789		
ILQLCMGNHELYMR	14	Unmodified	_ILQLCMGNHELYMR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.289727	1776.84735	-0.2106	-0.00012495	-0.96214	-0.00057083	-1.1727	-0.00069577	593.28920303885	12.343	0.12412	12.343	12.307	12.431	0	678	34	0.869855008346864	0.0223830071318586	0.869855008346864	526.659076613992	0	13.5519296374601						422	15	5	NaN	NaN	NaN	0.00012548	1	26591	73.655	63.405	1	153410			9790	710	8262	8477	9790	9790		
ILQLCMGNHELYMR	14	Unmodified	_ILQLCMGNHELYMR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.430952	1776.84735	1.9088	0.0016977	-0.14956	-0.00013303	1.7592	0.0015647	889.431224903333	12.343	0.088658	12.343	12.307	12.396	0	198	37	1.1918274123006	0.0238859627305146	1.1918274123006	481.06827624899	0	9.64131114851227						327	11	5	NaN	NaN	NaN	5.1095E-06	1	26592	84.999	80.472	1	94382			9791	710	8262	8477	9791	9791		
ILQPNTTDEFVIPLDPR	17	Unmodified	_ILQPNTTDEFVIPLDPR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.525473	1967.03639	0.92465	0.00091034	-0.47988	-0.00047245	0.44477	0.00043789	984.524132086123	16.271	0.23938	16.271	16.165	16.404	0	162	40	1.21569043230068	0.0258356466920253	1.21569043230068	490.332778925727	0	10.4204689789899						437	28	2	NaN	NaN	NaN	0.0023429	1	31053	40.83	35.131	1	155100			9792	3048	8263	8478	9792	9792		
ILQQSVVK	8	Unmodified	_ILQQSVVK_			0	0	0	Q9H2J4	Q9H2J4	Q9H2J4	PDCL3	Phosducin-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.78711	913.559667	0.0078309	3.5849E-06	1.0619	0.00048611	1.0697	0.0004897	457.787471680594	4.7071	0.088657	4.7071	4.6716	4.7603	0	717	25	0.84338031290707	0.0163045710776146	0.84338031290707	342.900537294506	0	6.62909259003135						124	11	2	NaN	NaN	NaN	0.015578	1	2579	51.43	28.121	1	36398			9793	2869	8264	8479	9793	9793		
ILQVSFK	7	Unmodified	_ILQVSFK_			0	0	0	Q15717	Q15717	Q15717	ELAVL1	ELAV-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	417.757821	833.501089	-1.6892	-0.00070566	-2.1563	-0.00090081	-3.8454	-0.0016065	417.75681841934	9.1238	0.13303	9.1238	9.0794	9.2125	0	849	28	0.753417699604308	0.0184565853443666	0.753417699604308	306.759053868813	0	7.51472212673048						174	16	3	NaN	NaN	NaN	0.012636	1	1360	66.087	35.029	1	44028			9794	1864	8265	8480	9794	9794		
ILSCGEVIHVK	11	Unmodified	_ILSCGEVIHVK_			0	0	0	Q9H2U2	Q9H2U2	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.900674	1253.68019	-1.6544	-0.00069301	-0.00031843	-1.3339E-07	-1.6547	-0.00069314	418.901011852731	6.8885	0.097535	6.8885	6.853	6.9505	8.8818E-16	792	31	0.792332785124922	0.0204516951022167	0.792332785124922	481.267540779246	0	12.4224785234135						216	12	4	NaN	NaN	NaN	0.072832	1	11036	11.355	5.0921	1	82306			9795	2874	8266	8481	9795	9795		
ILSCGEVIHVK	11	Unmodified	_ILSCGEVIHVK_			0	0	0	Q9H2U2	Q9H2U2	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.847373	1253.68019	1.8573	0.0011661	0.45512	0.00028575	2.3124	0.0014518	627.847678629821	6.8885	0.11528	6.8885	6.8441	6.9594	0	486	46	0.999498404980629	0.030261243599951	0.999498404980629	404.73763288997	0	12.2540106536621						258	14	4	NaN	NaN	NaN	0.00038465	1	11037	95.311	74.036	1	82969			9796	2874	8266	8481	9796	9796		
ILSDDVPIR	9	Unmodified	_ILSDDVPIR_			0	0	0	P54725	P54725	P54725	RAD23A	UV excision repair protein RAD23 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.292756	1026.57096	0.32686	0.0001681	3.1505	0.0016203	3.4773	0.0017884	514.797197162571	8.7334	0.19528	8.7334	8.6623	8.8576	0	696	79	0.857641857947968	0.0529016525867866	0.857641857947968	348.129802039224	0	21.473580926484						555	23	3	NaN	NaN	NaN	0.022642	1	4904	47.349	29.954	1	184910			9797	1255	8267	8482	9797	9797		
ILSEDIER	8	Unmodified	_ILSEDIER_			0	0	0	Q9NS87	Q9NS87	Q9NS87	KIF15	Kinesin-like protein KIF15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.761289	973.508025	-0.043839	-2.1383E-05	1.3652	0.00066589	1.3214	0.00064451	487.761305786179	9.5494	0.1596	9.5494	9.5051	9.6647	0	687	31	0.863749705078866	0.0203580790440647	0.863749705078866	350.861801406089	0	8.26960894408171						161	19	2	NaN	NaN	NaN	0.016676	1	3710	56.091	0	1	72794			9798	3035	8268	8483	9798	9798		
ILSFIQDQEEDYLK	14	Unmodified	_ILSFIQDQEEDYLK_			0	0	0	Q86XI2	Q86XI2	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.938167	1739.86178	1.4846	0.001293	2.767	0.0024099	4.2516	0.0037029	870.941007594504	15.003	0.07096	15.003	14.976	15.047	0	267	37	1.14597988355104	0.0239615794005357	1.14597988355104	462.638535502244	0	9.67342460483155						169	9	3	NaN	NaN	NaN	0.032389	1	25592	51.454	47.471	1	34342			9799	2187	8269	8484	9799	9799		
ILSGPFVQK	9	Unmodified	_ILSGPFVQK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.794935	987.575317	0.032753	1.6206E-05	-1.298	-0.00064225	-1.2653	-0.00062605	494.794331872098	8.352	0.15965	8.352	8.281	8.4406	0	708	25	0.849494101904619	0.0163023058577868	0.849494101904619	345.002606542712	0	6.6208087860561						271	19	3	NaN	NaN	NaN	0.039767	1	4013	33.396	17.814	1	78880			9800	801	8270	8485	9800	9800		
ILSGVVTK	8	Unmodified	_ILSGVVTK_			0	0	0	P62280	P62280	P62280	RPS11	40S ribosomal protein S11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.763104	815.511654	-1.7402	-0.00071134	0.37379	0.00015279	-1.3664	-0.00055855	408.763230170091	5.381	0.12417	5.381	5.3455	5.4697	0	831	31	0.76571780291124	0.0204887515295875	0.76571780291124	311.878367385824	0	8.34510880186792						215	15	3	NaN	NaN	NaN	0.026266	1	1165	39.324	17.396	1	72373			9801	1380	8271	8486	9801	9801		
ILSHLQQDSLK	11	Unmodified	_ILSHLQQDSLK_			0	0	0	Q9NY93	Q9NY93	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.361702	1280.70885	1.9159	0.0012288	-0.28848	-0.00018502	1.6274	0.0010438	641.361335087339	5.5139	0.088668	5.5139	5.4873	5.576	0	471	25	1.00957851518677	0.0161226065449527	1.00957851518677	408.725480387272	0	6.52719922824593						143	11	3	NaN	NaN	NaN	1.073E-11	1	11789	167.76	137.16	1	35638			9802	3111	8272	8487	9802	9802		
ILSISADIETIGEILK	16	Unmodified	_ILSISADIETIGEILK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.995485	1713.97642	1.8102	0.0015531	0.0096725	8.299E-06	1.8198	0.0015614	857.995842199583	20.066	0.13301	20.066	20.066	20.199	0	282	67	1.13599383354359	0.0439658526827531	1.13599383354359	458.661865772307	0	17.7513815887875						334	16	4	NaN	NaN	NaN	2.1055E-34	1	24889	218.12	199.62	1	247190			9803	1360	8273	8488	9803	9803		
ILSISADIETIGEILK	16	Unmodified	_ILSISADIETIGEILK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.995485	1713.97642	1.4281	0.0012253	1.0526	0.00090312	2.4807	0.0021284	857.996039267067	20.066	0.026587	20.066	20.066	20.093	0	195	67	1.19381749893585	0.0438029779907059	1.19381749893585	482.008388337045	0	17.6856201592649						222	4	5	NaN	NaN	NaN	0.00019601	1	24890	66.619	61.791	1	97892			9804	1360	8273	8488	9804	9804		
ILSLCPEIK	9	Unmodified	_ILSLCPEIK_			0	0	0	O94903	O94903	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.807185	1071.59982	0.81245	0.00043613	-5.4023	-0.0029	-4.5898	-0.0024639	536.804241673587	9.8776	0.20391	9.8776	9.8066	10.01	0	675	61	0.871889544407995	0.0407048667426549	0.871889544407995	353.716365044911	0	16.5135338486316						639	24	4	NaN	NaN	NaN	0.07068	1	6003	25.254	7.8583	1	289810			9805	394	8274	8489	9805	9805		
ILSLICNSSSEK	12	Unmodified	_ILSLICNSSSEK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.850309	1349.68607	0.85055	0.00057484	-1.5808	-0.0010684	-0.73026	-0.00049355	675.848849341033	9.3189	0.17738	9.3189	9.2568	9.4342	0	510	49	0.983355730988811	0.0322942844341361	0.983355730988811	397.892100033176	0	13.0671335383851						455	21	5	NaN	NaN	NaN	0.010179	1	13880	59.645	45.651	1	122210			9806	3330	8275	8490	9806	9806		
ILSLLEGQK	9	Unmodified	_ILSLLEGQK_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.8055	999.596446	-0.14499	-7.2611E-05	1.1097	0.00055576	0.96474	0.00048315	500.805823569985	10.472	0.12418	10.472	10.418	10.543	0	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	344.945596889526	0	9.10021176334709						226	15	3	NaN	NaN	NaN	0.045907	1	4288	24.121	9.586	1	55439			9807	1194	8276	8491	9807	9807		
ILSQSTDSLNMR	12	Unmodified	_ILSQSTDSLNMR_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.845558	1363.67656	1.2939	0.00088357	0.71938	0.00049123	2.0133	0.0013748	682.846214514102	7.4826	0.17735	7.4826	7.4205	7.5979	0	504	28	0.987393073566096	0.0181642753536437	0.987393073566096	399.484155542011	0	7.34898835625381						266	21	3	NaN	NaN	NaN	0.0067102	1	14298	39.039	30.565	1	55378			9808	2449	8277	8492	9808	9808		
ILSSDDYGK	9	Unmodified	_ILSSDDYGK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.245472	996.476391	1.0738	0.00053607	1.9117	0.00095442	2.9855	0.0014905	499.246329431672	4.1307	0.17737	4.1307	4.0775	4.2549	0	681	28	0.867820189810857	0.018315911392907	0.867820189810857	352.402063852031	0	7.43767551386202						306	21	3	NaN	NaN	NaN	0.010551	1	4202	30.593	20.514	1	78040			9809	1511	8278	8493	9809	9809		
ILSVQGTEPLVLFK	14	Unmodified	_ILSVQGTEPLVLFK_			0	0	0	Q9H8H0	Q9H8H0	Q9H8H0	NOL11	Nucleolar protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.458342	1542.90213	1.3868	0.0010712	0.79524	0.00061429	2.182	0.0016855	772.458840007562	16.493	0.088666	16.493	16.457	16.546	0	363	70	1.08195024817156	0.0461259947447743	1.08195024817156	437.229886078252	0	18.6401024091321						431	11	3	NaN	NaN	NaN	2.6932E-08	1	19837	133.49	105.9	1	114130			9810	2925	8279	8494	9810	9810		
ILTATVDNANILLQIDNAR	19	Unmodified	_ILTATVDNANILLQIDNAR_			0	0	0	Q04695;CON__Q04695	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.051416	2067.13242	0.53297	0.00036778	-0.93119	-0.00064257	-0.39822	-0.00027479	690.385067421639	16.555	0.26604	16.555	16.502	16.768	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	595.952592850921	0	13.4307033373079						768	31	6	NaN	NaN	NaN	1.351E-10	1	32837	167.59	165.04	1	396560		+	9811	36	8280	8495	9811	9811		
ILTDIMWPIIAK	12	Unmodified	_ILTDIMWPIIAK_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.412349	1412.81014	0.91721	0.00064885	-1.8768	-0.0013277	-0.95959	-0.00067883	707.411548411357	18.914	0.16846	18.914	18.851	19.02	0	477	40	1.0055473068722	0.0262082910405103	1.0055473068722	406.687078194893	0	10.5997731135102						588	20	5	NaN	NaN	NaN	2.7515E-05	1	15865	117.3	72.479	1	319250			9812	1623	8281	8496	9812	9812		
ILTDSIQR	8	Unmodified	_ILTDSIQR_			0	0	0	Q7Z2K6	Q7Z2K6	Q7Z2K6	ERMP1	Endoplasmic reticulum metallopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.271824	944.529095	-0.20138	-9.5306E-05	-2.854	-0.0013507	-3.0554	-0.001446	473.270841537862	5.7889	0.11526	5.7889	5.7357	5.8509	0	729	28	0.835224628594324	0.0183592202134729	0.835224628594324	339.419660431508	0	7.46084355909346						138	14	3	NaN	NaN	NaN	0.036908	1	3156	34.931	17.536	1	35396			9813	2127	8282	8497	9813	9813		
ILTDYGFEGHPFR	13	Unmodified	_ILTDYGFEGHPFR_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.924536	1550.75178	0.63646	0.00032964	-0.35872	-0.00018579	0.27774	0.00014385	517.92415179211	11.03	0.21282	11.03	10.942	11.154	0	696	37	0.857641857947968	0.0244364826116721	0.857641857947968	519.849625510877	0	14.8118893880428						629	25	4	NaN	NaN	NaN	0.0040299	1	20070	45.939	41.111	1	225380			9814	338	8283	8498	9814	9814		
ILTDYGFEGHPFR	13	Unmodified	_ILTDYGFEGHPFR_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.383165	1550.75178	2.5266	0.0019616	-0.21906	-0.00017007	2.3075	0.0017915	776.383193013938	11.004	0.14187	11.004	10.959	11.101	0	351	31	1.08996939197032	0.0200423371753535	1.08996939197032	440.450699445765	0	8.09899937782171						280	17	3	NaN	NaN	NaN	0.0020621	1	20073	72.922	69.314	1	57804			9815	338	8283	8498	9815	9815		
ILTEAEIDAHLVALAERD	18	Unmodified	_ILTEAEIDAHLVALAERD_			0	0	1	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.352983	1978.03712	-0.64536	-0.00042616	-1.5034	-0.00099275	-2.1487	-0.0014189	660.686269606521	15.721	0.12416	15.721	15.668	15.792	0	666	52	0.877991458330206	0.0345775238845497	0.877991458330206	531.166916605764	0	20.9186963852112						480	15	4	NaN	NaN	NaN	6.0977E-08	1	31255	78.888	70.923	1	148680			9816	1314	8284	8499	9816	9816		
ILTEAEIDAHLVALAERD	18	Unmodified	_ILTEAEIDAHLVALAERD_			0	0	1	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.352983	1978.03712	0.38378	0.00025343	0.037733	2.4917E-05	0.42151	0.00027835	660.353122035951	15.704	0.23056	15.704	15.659	15.89	0	543	37	0.961130371139249	0.024267665443817	0.961130371139249	581.464256133025	0	14.6814422466416						506	27	3	NaN	NaN	NaN	0.00011673	1	31256	46.206	39.459	1	211940			9817	1314	8284	8499	9817	9817		
ILTEAEIDAHLVALAERD	18	Unmodified	_ILTEAEIDAHLVALAERD_			0	0	1	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.025837	1978.03712	0.67293	0.00066622	0.11776	0.00011659	0.79069	0.00078281	990.026104971424	15.712	0.20395	15.712	15.668	15.872	0	90	61	1.26329880838669	0.039630166742592	1.26329880838669	509.515135329365	0	15.9836846492111						751	24	5	NaN	NaN	NaN	1.8204E-13	1	31257	129.04	123.35	1	182810			9818	1314	8284	8499	9818	9818		
ILTFDQLALDSPK	13	Unmodified	_ILTFDQLALDSPK_			0	0	0	Q07020	Q07020	Q07020	RPL18	60S ribosomal protein L18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.903399	1459.79225	1.9091	0.0013954	2.5475	0.001862	4.4567	0.0032574	730.905305252017	15.251	0.34591	15.251	15.189	15.535	0	366	196	1.07994477139643	0.130177157602324	1.07994477139643	436.640333675812	0	52.6328744190775						2722	40	5	NaN	NaN	NaN	4.4677E-17	1	17266	207.67	182.85	1	2694500			9819	1565	8285	8500	9819	9819		
ILTFLETYLASGHQK	15	Unmodified	_ILTFLETYLASGHQK_			0	0	0	Q9NUJ3	Q9NUJ3	Q9NUJ3	TCP11L1	T-complex protein 11-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.3138	1719.91957	-0.38143	-0.00021906	-1.5953	-0.00091621	-1.9767	-0.0011353	574.647322763909	15.455	0.097657	15.455	15.42	15.517	0	672	25	0.873923798053065	0.0162729009073457	0.873923798053065	529.257984840615	0	9.85505001799913						162	12	3	NaN	NaN	NaN	0.0052256	1	25066	50.116	36.318	1	33512			9820	3051	8286	8501	9820	9820		
ILTMDGLIEDIK	12	Unmodified	_ILTMDGLIEDIK_			0	0	0	P82921	P82921	P82921	MRPS21	28S ribosomal protein S21, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.873253	1359.73195	0.49369	0.00033614	0.7845	0.00053415	1.2782	0.00087029	680.873808126708	17.149	0.1507	17.149	17.087	17.238	0	450	37	1.02367897599655	0.0241672134976301	1.02367897599655	414.176934150797	0	9.77797007472185						354	18	4	NaN	NaN	NaN	0.00053106	1	14201	90.263	48.188	1	103180			9821	1475	8287	8502	9821	9821		
ILTPLVSLDTPGK	13	Unmodified	_ILTPLVSLDTPGK_			0	0	0	Q9HC38	Q9HC38	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.403035	1352.79152	1.0026	0.00067918	-0.29326	-0.00019865	0.70936	0.00048053	677.402832708986	14.036	0.18616	14.036	13.974	14.161	1.7764E-15	489	49	0.997481546940468	0.032276430046501	0.997481546940468	403.598386691664	0	13.0596050973479						360	22	3	NaN	NaN	NaN	0.00019629	1	13990	92.445	50.37	1	172980			9822	2958	8288	8503	9822	9822		
ILTSVDQYLELIGNSLPGTTAK	22	Unmodified	_ILTSVDQYLELIGNSLPGTTAK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.424807	2332.25259	0.64665	0.00050337	-0.54182	-0.00042177	0.10482	8.1597E-05	778.758649858108	19.969	0.026603	19.969	19.96	19.986	0	426	37	1.03977710643793	0.0241405316442127	1.03977710643793	628.378377926582	0	14.5890768540222						112	4	5	NaN	NaN	NaN	0.00081354	1	35918	61.503	59.402	1	31843			9823	2633	8289	8504	9823	9823		
ILTTASSHEFEHTK	14	Unmodified	_ILTTASSHEFEHTK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.901919	1599.78929	3.2472	0.0026007	-2.0789	-0.001665	1.1684	0.00093574	800.900198219294	3.9977	0.053178	3.9977	3.98	4.0332	0	303	22	1.12200181823275	0.0139997198598183	1.12200181823275	453.271831854326	0	5.65567592065247						76	7	3	NaN	NaN	NaN	7.7036E-09	1	21573	117.21	106.72	1	14358			9824	1912	8290	8505	9824	9824		
ILTTASSHEFEHTK	14	Unmodified	_ILTTASSHEFEHTK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.270372	1599.78929	1.1513	0.00061513	1.1871	0.00063423	2.3384	0.0012494	534.27087751063	4.0066	0.15077	4.0066	3.9711	4.1219	0	732	28	0.833184998970724	0.0183592202134729	0.833184998970724	504.888540727314	0	11.125212184476						325	18	4	NaN	NaN	NaN	7.9548E-08	1	21574	101.45	87.45	1	131860			9825	1912	8290	8505	9825	9825		
ILTTEGR	7	Unmodified	_ILTTEGR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	395.226885	788.439217	-0.89202	-0.00035255	1.6312	0.00064469	0.73918	0.00029214	395.227419621067	2.7651	0.2394	2.7651	2.7296	2.969	0	810	25	0.78005493425781	0.0163773081327158	0.78005493425781	317.89810912877	0	6.67429312906427						192	28	2	NaN	NaN	NaN	0.0079066	1	896	92.319	8.2557	1	34091			9826	1575	8291	8506	9826	9826		
ILTTNTWSSELSK	13	Unmodified	_ILTTNTWSSELSK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.388113	1478.76167	1.8506	0.0013702	-0.088577	-6.5581E-05	1.762	0.0013046	740.889929388928	10.773	0.26602	10.773	10.702	10.968	0	444	46	1.02770517576159	0.0301860841315895	1.02770517576159	415.468925036901	0	12.2032857486886						649	31	4	NaN	NaN	NaN	2.5627E-07	1	17870	134.2	114.88	1	222240			9827	275	8292	8507	9827	9827		
ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR	36	Unmodified	_ILTVEDHYYEGGIGEAVSSAVVGEPGITVTHLAVNR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	938.983706	3751.90572	1.8025	0.0016925	1.7985	0.0016888	3.601	0.0033813	939.486424434015	16.457	0.42562	16.457	16.28	16.706	0	216	124	1.17988115188462	0.081795739963052	1.17988115188462	948.597988403525	0	65.7619407386857						4784	49	8	NaN	NaN	NaN	1.0015E-17	1	38724	176.1	174.55	1	4031100			9828	888	8293	8508	9828	9828		
ILVAEGTR	8	Unmodified	_ILVAEGTR_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.75581	857.497067	0.37008	0.00015904	0.50057	0.00021512	0.87065	0.00037417	429.756080226636	4.3347	0.17734	4.3347	4.2992	4.4765	0	726	31	0.837263974740672	0.0203920467361437	0.837263974740672	340.743203462045	0	8.29899713787819						279	21	3	NaN	NaN	NaN	0.00089187	1	1679	113.1	79.289	1	89560			9829	626	8294	8509	9829	9829		
ILVAGDSMDSVK	12	Unmodified	_ILVAGDSMDSVK_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.821021	1233.62749	1.7875	0.0011044	0.35855	0.00022152	2.1461	0.0013259	617.821481300006	8.2454	0.097588	8.2454	8.21	8.3076	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.809294634667	0	8.98537999547852						297	12	4	NaN	NaN	NaN	0.00068247	1	10432	70.389	58.322	1	119620			9830	452	8295	8510	9830	9830		
ILVAQGGLGGK	11	Unmodified	_ILVAQGGLGGK_			0	0	0	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.811116	1011.60768	-0.15861	-8.0385E-05	1.5381	0.00077955	1.3795	0.00069917	506.812063326798	6.6668	0.079785	6.6668	6.6402	6.72	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	349.024628478164	0	6.61313352790393						80	10	2	NaN	NaN	NaN	0.040222	1	4556	43.734	26.339	1	17940			9831	9	8296	8511	9831	9831		
ILVATNLFGR	10	Unmodified	_ILVATNLFGR_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.332216	1102.64988	0.78406	0.00043306	-2.1941	-0.0012118	-1.41	-0.00077879	552.331384184672	13.797	0.22164	13.797	13.735	13.957	0	633	46	0.900343422309015	0.0304630467152948	0.900343422309015	365.129226416588	0	12.3541177797713						603	26	4	NaN	NaN	NaN	1.8754E-14	1	6795	169.97	103.89	1	1163300			9832	1705;51	8297	8512	9832	9832		
ILVDNLCDMEMVNK	14	Unmodified	_ILVDNLCDMEMVNK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.401526	1692.7885	2.1525	0.001824	-0.62638	-0.00053079	1.5261	0.0012932	847.901062679534	13.832	0.11528	13.832	13.788	13.903	0	318	43	1.11199926528787	0.0280052262882846	1.11199926528787	449.019046337206	0	11.3083527956899						316	14	4	NaN	NaN	NaN	0.001247	1	24277	65.408	57.406	1	82479			9833	131	8298	8513	9833	9833		
ILVDYDEK	8	Unmodified	_ILVDYDEK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.758215	993.501877	0.33234	0.00016543	0.71448	0.00035564	1.0468	0.00052106	497.758271549239	6.6934	0.24828	6.6934	6.587	6.8353	0	690	46	0.86171403876517	0.0305350029488345	0.86171403876517	349.936766449152	0	12.4000767246899						360	29	2	NaN	NaN	NaN	0.0089718	1	4133	53.878	27.655	1	140560			9834	939	8299	8514	9834	9834		
ILVELATFLEK	11	Unmodified	_ILVELATFLEK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.381571	1274.74859	0.63496	0.00040535	-1.9229	-0.0012276	-1.288	-0.00082223	638.380303177649	18.364	0.097524	18.364	18.328	18.426	0	531	31	0.969216233931596	0.0202118620218336	0.969216233931596	392.404486791766	0	8.1831329956276						194	12	3	NaN	NaN	NaN	0.004415	1	11632	51.872	42.358	1	55167			9835	3136	8300	8515	9835	9835		
ILVLDDTNHER	11	Unmodified	_ILVLDDTNHER_			0	0	0	P09543	P09543	P09543	CNP	2,3-cyclic-nucleotide 3-phosphodiesterase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.846416	1323.67828	1.7395	0.001153	-0.065102	-4.3153E-05	1.6744	0.0011098	662.846482007903	6.4983	0.19507	6.4983	6.4185	6.6136	0	471	28	1.00957851518677	0.0181391858417761	1.00957851518677	408.583885698418	0	7.34106255546408						330	23	3	NaN	NaN	NaN	5.2078E-05	1	13097	74.424	58.842	1	95420			9836	605	8301	8516	9836	9836		
ILVLTELLER	10	Unmodified	_ILVLTELLER_			0	0	0	Q9NWX5	Q9NWX5	Q9NWX5	ASB6	Ankyrin repeat and SOCS box protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.873914	1197.73327	-0.87184	-0.00052299	-4.0888	-0.0024528	-4.9607	-0.0029758	599.871625845893	18.213	0.062079	18.213	18.186	18.248	0	606	22	0.918606045818476	0.0141944207177085	0.918606045818476	372.170259155462	0	5.75082350167247						85	8	2	NaN	NaN	NaN	7.1859E-05	1	9408	72.042	48.466	1	28100			9837	3089	8302	8517	9837	9837		
ILVTLLHTLER	11	Unmodified	_ILVTLLHTLER_			0	0	0	Q9BWD1	Q9BWD1	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.405912	1306.79727	1.5694	0.001027	0.5487	0.00035907	2.1181	0.0013861	654.406372382971	13.806	0.15072	13.806	13.753	13.903	0	441	34	1.02971785871157	0.022139515615524	1.02971785871157	416.790035458825	0	8.96122119313486						330	18	4	NaN	NaN	NaN	1.0225E-11	1	12573	154.81	142.75	1	119290			9838	2777	8303	8518	9838	9838		
ILVVIEPLLIDEDYYAR	17	Unmodified	_ILVVIEPLLIDEDYYAR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.56152	2033.10849	0.61487	0.00062567	0.16562	0.00016853	0.78049	0.0007942	1018.06272831032	19.853	0.026601	19.853	19.836	19.862	0	126	19	1.23951419873743	0.011902086473327	1.23951419873743	499.827928312355	0	4.79945710232062						46	4	3	NaN	NaN	NaN	0.050621	1	32215	14.363	11.816	1	6985.2			9839	343	8304	8519	9839	9839		
ILVVNAAYFVGK	12	Unmodified	_ILVVNAAYFVGK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.381906	1292.74926	1.1267	0.00072944	-0.39445	-0.00025536	0.7323	0.00047408	647.381965861577	14.551	0.15073	14.551	14.515	14.666	0	489	31	0.997481546940468	0.0201699767195437	0.997481546940468	403.787919931346	0	8.16495600307513						240	18	4	NaN	NaN	NaN	0.00054081	1	12166	60.892	48.825	1	61201			9840	994	8305	8520	9840	9840		
ILYLINQGEHLGTTEATEAFFAMTK	25	Unmodified	_ILYLINQGEHLGTTEATEAFFAMTK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	933.473832	2797.39967	0.74542	0.00069583	-0.11167	-0.00010424	0.63375	0.00059159	933.808088550602	18.94	0.053194	18.94	18.914	18.967	0	396	25	1.05987478976334	0.0160670595642813	1.05987478976334	639.893336397228	0	9.70039522590855						173	7	5	NaN	NaN	NaN	0.00073149	1	37891	36.136	35.039	1	35288			9841	3452	8306	8521	9841	9841		
ILYLTPEQEK	10	Unmodified	_ILYLTPEQEK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.339904	1232.66525	1.6884	0.0010423	-0.78794	-0.00048642	0.90051	0.00055592	617.339503028841	8.973	0.24847	8.973	8.8753	9.1238	0	525	46	0.973257487423603	0.0303115059679868	0.973257487423603	394.184806503348	0	12.276643405483						693	29	5	NaN	NaN	NaN	3.8705E-07	1	10408	146.27	87.98	1	413210			9842	1392	8307	8522	9842	9842		
ILYMTDEVNDPSLTIK	16	Unmodified	_ILYMTDEVNDPSLTIK_			0	0	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.47406	1850.93357	2.0638	0.001912	0.081712	7.5704E-05	2.1455	0.0019878	926.975499018408	14.054	0.29262	14.054	13.912	14.205	0	264	121	1.14797626962532	0.0797842614281592	1.14797626962532	463.22459481083	0	32.1940733011865						1238	34	5	NaN	NaN	NaN	4.9115E-12	1	28527	126.17	91.98	1	605730			9843	477	8308	8523	9843	9843		
ILYSQCGDVMR	11	Unmodified	_ILYSQCGDVMR_			0	0	0	P60660;P14649	P60660	P60660	MYL6;MYL6B	Myosin light polypeptide 6;Myosin light chain 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.318122	1340.62169	1.6536	0.0011101	1.2346	0.00082878	2.8881	0.0019388	671.319727401343	7.5181	0.25714	7.5181	7.4117	7.6688	0	516	52	0.979317271586824	0.0343387884231721	0.979317271586824	396.285177174581	0	13.8953465327817						949	30	5	NaN	NaN	NaN	0.00031993	1	13607	95.311	83.951	1	963180			9844	1309	8309	8524	9844	9844		
ILYSQCGDVMR	11	Oxidation (M)	_ILYSQCGDVM(Oxidation (M))R_	ILYSQCGDVM(1)R	ILYSQCGDVM(93)R	0	1	0	P60660;P14649	P60660	P60660	MYL6;MYL6B	Myosin light polypeptide 6;Myosin light chain 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.31558	1356.61661	1.5872	0.0010782	-0.27573	-0.00018731	1.3115	0.0008909	679.315437641027	5.443	0.21277	5.443	5.3721	5.5849	0	522	40	0.975277694896658	0.0262663358758335	0.975277694896658	394.603068265224	0	10.627513356375						492	25	5	NaN	NaN	NaN	0.0015479	1	14080	92.732	89.387	1	177350			9845	1309	8309	8525	9845	9845	457	
IMASSPDMDLATVSALR	17	Unmodified	_IMASSPDMDLATVSALR_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.444779	1776.87501	2.4263	0.002158	-1.0983	-0.00097689	1.328	0.0011812	889.445587337332	14.214	0.17734	14.214	14.152	14.329	0	276	52	1.13998907770044	0.03395725115354	1.13998907770044	460.14423970767	0	13.706476509518						712	21	4	NaN	NaN	NaN	0.065735	1	26596	31.801	21.316	1	298420			9846	938	8310	8526	9846	9846		
IMASSPDMDLATVSALR	17	Oxidation (M)	_IM(Oxidation (M))ASSPDMDLATVSALR_	IM(1)ASSPDMDLATVSALR	IM(43)ASSPDM(-43)DLATVSALR	0	1	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.442237	1792.86992	1.4125	0.0012676	2.2049	0.0019787	3.6174	0.0032464	897.443304895934	13.345	0.097601	13.345	13.336	13.434	0	264	7	1.14797626962532	0.00399194867451191	1.14797626962532	463.336161249865	0	1.61119547824671						35	12	2	NaN	NaN	NaN	0.0041282	1	27047	58.338	57.456	2	13356			9847	938	8310	8527	9847	9847	337	
IMATPEQVGK	10	Unmodified	_IMATPEQVGK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.286617	1072.55868	1.9022	0.001022	-7.3461	-0.0039469	-5.4439	-0.0029249	537.283253952946	5.0263	0.34576	5.0263	4.8844	5.2302	0	687	103	0.863749705078866	0.0691119439138577	0.863749705078866	350.410151338463	0	28.0376671433294						907	40	2	NaN	NaN	NaN	1.6755E-05	1	6019	99.305	77.377	1	487180			9848	673	8311	8528	9848	9848		
IMDPNIVGSEHYDVAR	16	Unmodified	_IMDPNIVGSEHYDVAR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.438343	1814.86213	1.9085	0.0017337	-0.11788	-0.00010709	1.7906	0.0016266	908.438334307523	9.2834	0.15077	9.2834	9.2391	9.3898	0	294	112	1.12800004657306	0.0739070527874146	1.12800004657306	455.231194870155	0	29.8269455324594						1111	18	5	NaN	NaN	NaN	2.4574E-06	1	27597	57.279	50.902	1	373480			9849	541	8312	8529	9849	9849		
IMDPNIVGSEHYDVAR	16	Unmodified	_IMDPNIVGSEHYDVAR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.961321	1814.86213	1.0382	0.00062909	2.3545	0.0014267	3.3926	0.0020558	606.297971644332	9.2834	0.32813	9.2834	9.1947	9.5228	0	570	163	0.942920803299286	0.109522961689414	0.942920803299286	570.80469738688	0	66.3006063555883						1933	38	6	NaN	NaN	NaN	1.173E-08	1	27598	149.58	123.12	1	1733500			9850	541	8312	8529	9850	9850		
IMDPNIVGSEHYDVAR	16	Oxidation (M)	_IM(Oxidation (M))DPNIVGSEHYDVAR_	IM(1)DPNIVGSEHYDVAR	IM(130)DPNIVGSEHYDVAR	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.292959	1830.85705	1.5189	0.0009285	0.62756	0.00038363	2.1465	0.0013121	611.293635672139	7.8906	0.23058	7.8906	7.7842	8.0148	0	582	58	0.934820374997243	0.0385010429899318	0.934820374997243	565.863591682566	0	23.305374008212						792	27	5	NaN	NaN	NaN	3.6887E-07	1	27998	130.71	112.2	1	383800			9851	541	8312	8530	9851	9851	109	
IMDPNIVGSEHYDVAR	16	Oxidation (M)	_IM(Oxidation (M))DPNIVGSEHYDVAR_	IM(1)DPNIVGSEHYDVAR	IM(48)DPNIVGSEHYDVAR	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.4358	1830.85705	2.8185	0.002583	4.4631	0.0040901	7.2816	0.0066731	916.941973203402	7.8818	0.1596	7.8818	7.8374	7.997	0	273	76	1.14198628764525	0.0499646417940307	1.14198628764525	460.845122474487	0	20.16308051688						700	19	5	NaN	NaN	NaN	0.00087285	1	27999	47.915	39.541	1	235900			9852	541	8312	8530	9852	9852	109	
IMDSSQNAYNEDTSALVAR	19	Unmodified	_IMDSSQNAYNEDTSALVAR_			0	0	0	Q9BRX5	Q9BRX5	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.9813	2083.94805	1.5123	0.0015773	-0.20063	-0.00020926	1.3116	0.001368	1043.48268086633	9.4874	0.079804	9.4874	9.4519	9.5317	0	207	37	1.18585551256002	0.0238892429642199	1.18585551256002	478.111201733023	0	9.63162420812813						258	10	4	NaN	NaN	NaN	1.1503E-10	1	33075	93.026	89.176	1	48275			9853	2717	8313	8531	9853	9853		
IMEFTTTLLNTSPEGWK	17	Unmodified	_IMEFTTTLLNTSPEGWK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.492784	1966.97101	0.97361	0.00095852	-0.0029758	-2.9297E-06	0.97064	0.00095559	984.995082091754	17.273	0.23057	17.273	17.158	17.388	0	210	106	1.18386433251387	0.069662697100338	1.18386433251387	477.496248921997	0	28.0975409442121						1792	27	7	NaN	NaN	NaN	0.00020449	1	31047	69.327	61.327	1	498610			9854	1465	8314	8532	9854	9854		
IMEFTTTLLNTSPEGWK	17	Unmodified	_IMEFTTTLLNTSPEGWK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.664281	1966.97101	0.77474	0.00050874	8.7574	0.0057507	9.5322	0.0062594	656.669486003486	11.376	0.12421	11.376	11.323	11.447	0	633	109	0.900343422309015	0.0729645891705353	0.900343422309015	544.710690545664	0	44.1438130913806						624	15	5	NaN	NaN	NaN	0.048633	1	31051	15.528	6.2665	1	156900			9855	1465	8314	8532	9855	9855		
IMEIVDAITTTAQSHQR	17	Unmodified	_IMEIVDAITTTAQSHQR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.663163	1912.96766	0.80406	0.00051352	-2.4537	-0.0015671	-1.6497	-0.0010536	638.997268610981	13.407	0.15078	13.407	13.354	13.504	0	573	55	0.940896116921038	0.0364317543257808	0.940896116921038	569.35771380189	0	22.045686000487						598	18	5	NaN	NaN	NaN	0.018587	1	29910	58.338	9.2413	1	171700			9856	578	8315	8533	9856	9856		
IMEIVDAITTTAQSHQR	17	Unmodified	_IMEIVDAITTTAQSHQR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.491107	1912.96766	1.1108	0.0010636	-0.26802	-0.00025663	0.8428	0.00080697	957.491195942924	13.407	0.19513	13.407	13.336	13.531	0	99	55	1.25735632164274	0.0356720339467391	1.25735632164274	507.238585058068	0	14.3906955521146						702	23	5	NaN	NaN	NaN	0.050247	1	29912	26.517	0	1	296340			9857	578	8315	8533	9857	9857		
IMEVIDAITTTAQSHQR	17	Unmodified	_IMEVIDAITTTAQSHQR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.663163	1912.96766	0.7753	0.00049515	-0.50094	-0.00031993	0.27436	0.00017522	638.663389427941	13.247	0.097455	13.247	13.203	13.3	0	573	46	0.940896116921038	0.0303745102206231	0.940896116921038	569.357705791019	0	18.3803090933483						407	12	4	NaN	NaN	NaN	7.3364E-07	1	29911	88.42	10.263	1	110550			9858	744	8316	8534	9858	9858		
IMEVIDAITTTAQSHQR	17	Unmodified	_IMEVIDAITTTAQSHQR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.491107	1912.96766	1.1417	0.0010932	0.030671	2.9367E-05	1.1724	0.0011226	957.992697300595	13.247	0.13292	13.247	13.203	13.336	0	99	49	1.25735632164274	0.031708472089486	1.25735632164274	507.238583965875	0	12.7917283315352						589	16	5	NaN	NaN	NaN	5.1732E-14	1	29914	139.7	13.532	1	239630			9859	744	8316	8534	9859	9859		
IMFEVQDLK	9	Unmodified	_IMFEVQDLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.796817	1121.57908	0.23284	0.00013081	-1.885	-0.001059	-1.6521	-0.00092817	561.795587496822	12.52	0.20395	12.52	12.431	12.635	0	639	49	0.896281965493857	0.032491664365396	0.896281965493857	363.406391613971	0	13.1740668217671						632	24	4	NaN	NaN	NaN	0.012358	1	7314	56.378	35.72	1	170510			9860	1737	8317	8535	9860	9860		
IMFVDPSLTVR	11	Unmodified	_IMFVDPSLTVR_			0	0	0	O95994;Q8TD06	O95994	O95994	AGR2;AGR3	Anterior gradient protein 2 homolog;Anterior gradient protein 3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.349748	1276.68494	1.052	0.00067258	-1.3676	-0.00087438	-0.31563	-0.0002018	639.34883273427	14.373	0.14187	14.373	14.302	14.444	0	534	37	0.967195187796614	0.0242542357032265	0.967195187796614	391.579862147729	0	9.81960042088741						355	17	4	NaN	NaN	NaN	0.00062087	1	11683	88.181	76.821	1	93054			9861	466	8318	8536	9861	9861		
IMGGSGTETTLEK	13	Unmodified	_IMGGSGTETTLEK_			0	0	0	Q86V48	Q86V48	Q86V48	LUZP1	Leucine zipper protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.326667	1322.63878	1.4812	0.00098102	-2.5799	-0.0017087	-1.0988	-0.00072773	662.826326335335	5.2125	0.18623	5.2125	5.1593	5.3455	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.252167294811	0	8.17882481475851						264	22	3	NaN	NaN	NaN	0.00052416	1	13064	94.66	62.707	1	54608			9862	2171	8319	8537	9862	9862		
IMGIPEEEQMGLLR	14	Unmodified	_IMGIPEEEQMGLLR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.412751	1614.81095	1.275	0.0010308	-2.0445	-0.0016528	-0.76942	-0.00062201	808.412470362533	14.852	0.19505	14.852	14.79	14.985	-1.7764E-15	390	46	1.06389100039157	0.0301112043248537	1.06389100039157	429.761617928812	0	12.1635016027689						527	23	3	NaN	NaN	NaN	4.366E-05	1	22041	90.142	68.139	1	470300			9863	972	8320	8538	9863	9863		
IMGLDLPDGGHLTHGYMSDVK	21	Unmodified	_IMGLDLPDGGHLTHGYMSDVK_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.697768	2255.07147	0.75179	0.00056587	-0.81789	-0.00061562	-0.066098	-4.9752E-05	753.031561952994	13.096	0.16855	13.096	13.034	13.203	0	564	94	0.946969335010767	0.0626785169245925	0.946969335010767	572.406897443988	0	37.8867763535221						1040	20	6	NaN	NaN	NaN	1.1832E-07	1	35236	110.9	100.15	1	412020			9864	954	8321	8539	9864	9864		
IMGLDLPDGGHLTHGYMSDVK	21	Unmodified	_IMGLDLPDGGHLTHGYMSDVK_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	564.775145	2255.07147	0.62315	0.00035194	-0.017629	-9.9565E-06	0.60552	0.00034198	565.025882613032	13.096	0.15073	13.096	13.034	13.185	0	606	40	0.918606045818476	0.0263683793700451	0.918606045818476	740.347799663557	0	21.2515166171295						468	18	6	NaN	NaN	NaN	0.015086	1	35237	44.16	42.059	1	234650			9865	954	8321	8539	9865	9865		
IMGNLGAADIDHK	13	Unmodified	_IMGNLGAADIDHK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.230971	1353.67108	-0.35431	-0.00016023	0.75017	0.00033925	0.39586	0.00017902	452.231660609781	6.9505	0.15975	6.9505	6.9062	7.066	0	756	34	0.816857749704129	0.0224608985391257	0.816857749704129	495.765294803765	0	13.6319132552031						377	19	4	NaN	NaN	NaN	0.010465	1	14007	60.547	47.952	1	140350			9866	343	8322	8540	9866	9866		
IMGNLGAADIDHK	13	Unmodified	_IMGNLGAADIDHK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.842819	1353.67108	1.9986	0.0013548	0.67926	0.00046043	2.6779	0.0018152	677.84327947802	6.9505	0.15958	6.9505	6.8885	7.0481	0	447	31	1.02569221487577	0.0201310011285361	1.02569221487577	415.010182255796	0	8.14529965829684						333	19	4	NaN	NaN	NaN	3.0132E-07	1	14008	117.99	107.9	1	114100			9867	343	8322	8540	9867	9867		
IMGPNYTPGK	10	Unmodified	_IMGPNYTPGK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.273509	1076.53247	1.7052	0.00091958	0.49491	0.00026689	2.2001	0.0011865	539.274017774373	5.5494	0.39906	5.5494	5.3898	5.7889	0	651	76	0.888155670855968	0.050792901738154	0.888155670855968	360.294380893924	0	20.6049431265995						1397	46	4	NaN	NaN	NaN	0.00064025	1	6126	93.467	68.617	1	1330000			9868	679	8323	8541	9868	9868		
IMGTSPLQIDR	11	Unmodified	_IMGTSPLQIDR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.82918	1229.64381	1.6332	0.0010058	-0.12843	-7.9093E-05	1.5048	0.0009267	615.829476619887	9.576	0.31036	9.576	9.4696	9.78	0	567	85	0.944945209309785	0.0566402739073221	0.944945209309785	382.728293900091	0	22.9408384581549						1536	36	5	NaN	NaN	NaN	5.5346E-12	1	10300	154.81	116.49	1	1674500			9869	922	8324	8542	9869	9869		
IMGVAGGLTNLSK	13	Unmodified	_IMGVAGGLTNLSK_			0	0	0	Q8WWY3	Q8WWY3	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.852655	1259.69076	1.4381	0.00090722	0.81989	0.00051723	2.258	0.0014244	630.853614562366	11.101	0.14188	11.101	11.066	11.208	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	394.909150314304	0	8.17965320136045						225	17	4	NaN	NaN	NaN	2.6707E-05	1	11212	120.65	88.701	1	57551			9870	2393	8325	8543	9870	9870		
IMGVLTHLDSFK	12	Unmodified	_IMGVLTHLDSFK_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.868305	1359.72206	1.0939	0.0007448	0.29943	0.00020387	1.3933	0.00094868	680.868830173556	12.662	0.10639	12.662	12.591	12.697	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.471968927113	0	8.15393877675916						154	13	4	NaN	NaN	NaN	0.00068247	1	14198	47.334	37.82	1	29557			9871	1768	8326	8544	9871	9871		
IMHFPTWVDLK	11	Unmodified	_IMHFPTWVDLK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.912803	1385.71658	-1.6671	-0.00077174	-1.5586	-0.00072149	-3.2257	-0.0014932	462.91215739747	14.639	0.24826	14.639	14.489	14.737	0	822	52	0.771863999559055	0.0348187576890427	0.771863999559055	468.348452673903	0	21.1271821162882						1101	29	4	NaN	NaN	NaN	0.00039681	1	15010	51.872	42.895	1	373600			9872	2404	8327	8545	9872	9872		
IMIMTDQDQDGSHIK	15	Unmodified	_IMIMTDQDQDGSHIK_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.405654	1730.79676	2.8571	0.0024754	-2.3591	-0.002044	0.49793	0.00043141	866.404103201283	6.9594	0.12412	6.9594	6.9239	7.0481	0	297	58	1.12600091227925	0.0379940239477778	1.12600091227925	454.591749958206	0	15.3390371588712						475	15	5	NaN	NaN	NaN	1.1583E-06	1	25336	97.175	79.077	1	143200			9873	652;1534	8328	8546	9873	9873		
IMIMTDQDQDGSHIK	15	Unmodified	_IMIMTDQDQDGSHIK_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.939528	1730.79676	0.17119	9.8938E-05	0.42071	0.00024314	0.5919	0.00034208	577.939972432474	6.9594	0.17743	6.9594	6.9151	7.0925	0	696	52	0.857641857947968	0.0346255696673232	0.857641857947968	519.371385615844	0	20.9685778850437						499	21	5	NaN	NaN	NaN	1.0955E-08	1	25338	153.25	148.1	1	223000			9874	652;1534	8328	8546	9874	9874		
IMLDSSNLQHQK	12	Unmodified	_IMLDSSNLQHQK_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.361376	1412.7082	2.4268	0.0017166	-0.54929	-0.00038855	1.8775	0.001328	707.360943358993	5.5583	0.079775	5.5583	5.5317	5.6115	0	396	25	1.05987478976334	0.0160670595642813	1.05987478976334	428.659770188131	0	6.49822236262622						138	10	3	NaN	NaN	NaN	0.00045324	1	15852	85.716	50.935	1	30665			9875	3343	8329	8547	9875	9875		
IMLFTGGPPTQGPGMVVGDELK	22	Unmodified	_IMLFTGGPPTQGPGMVVGDELK_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.57378	2243.13301	0.0068459	7.685E-06	-0.15427	-0.00017318	-0.14742	-0.00016549	1123.07586217949	16.723	0.13299	16.723	16.67	16.803	0	72	64	1.27517645957152	0.041574645421063	1.27517645957152	513.881887722926	0	16.7541183104697						721	16	4	NaN	NaN	NaN	2.234E-11	1	35133	101.52	95.908	1	144930			9876	1851	8330	8548	9876	9876		
IMLFTNEDNPHGNDSAK	17	Unmodified	_IMLFTNEDNPHGNDSAK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.959868	1901.85778	1.6908	0.0010736	-0.40615	-0.00025789	1.2847	0.00081572	635.294419907906	7.9172	0.24841	7.9172	7.8552	8.1036	0	579	64	0.936845902828289	0.0425125486397032	0.936845902828289	566.930650754998	0	25.7263940556272						842	29	5	NaN	NaN	NaN	4.8698E-14	1	29636	128.41	110.31	1	333990			9877	673	8331	8549	9877	9877		
IMLFTNEDNPHGNDSAK	17	Unmodified	_IMLFTNEDNPHGNDSAK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.936164	1901.85778	2.6701	0.0025418	-0.76663	-0.00072978	1.9035	0.001812	951.936034087656	7.9172	0.15962	7.9172	7.8552	8.0148	0	255	49	1.15396378101328	0.0319355989061636	1.15396378101328	465.547888037087	0	12.8838971106259						532	19	4	NaN	NaN	NaN	2.8421E-10	1	29637	101.43	87.63	1	140870			9878	673	8331	8549	9878	9878		
IMLGDEAALLEQK	13	Unmodified	_IMLGDEAALLEQK_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.88161	1429.74867	2.0932	0.0014985	0.9426	0.00067479	3.0358	0.0021733	715.881445494954	13.558	0.13299	13.558	13.496	13.629	0	444	43	1.02770517576159	0.0281756225975058	1.02770517576159	415.600933979526	0	11.3941384583379						338	16	3	NaN	NaN	NaN	0.00043942	1	16390	58.476	43.714	1	135560			9879	2772	8332	8550	9879	9879		
IMLLDEFTTK	10	Unmodified	_IMLLDEFTTK_			0	0	0	O00186	O00186	O00186	STXBP3	Syntaxin-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.823032	1209.63151	0.78597	0.00047616	-1.2374	-0.00074962	-0.45138	-0.00027346	605.822251788443	15.517	0.13301	15.517	15.464	15.597	0	573	25	0.940896116921038	0.0161986138950868	0.940896116921038	381.158288901609	0	6.56208038676311						211	16	4	NaN	NaN	NaN	0.0067053	1	9722	44.82	17.116	1	62706			9880	59	8333	8551	9880	9880		
IMLLNHPDK	9	Unmodified	_IMLLNHPDK_			0	0	0	Q96DA6	Q96DA6	Q96DA6	DNAJC19	Mitochondrial import inner membrane translocase subunit TIM14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.797152	1079.57975	1.0135	0.0005481	-0.77261	-0.00041783	0.2409	0.00013028	540.798074376137	5.8066	0.10639	5.8066	5.7534	5.8598	0	645	34	0.892219381832517	0.0223457630982734	0.892219381832517	361.929987311021	0	9.06458873153167						252	13	4	NaN	NaN	NaN	0.0015345	1	6202	74.269	46.532	1	52597			9881	2502	8334	8552	9881	9881		
IMLNTPEDVQALVSGK	16	Unmodified	_IMLNTPEDVQALVSGK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.955837	1713.89712	2.1426	0.0018382	0.12476	0.00010704	2.2673	0.0019453	857.956128767417	15.313	0.24837	15.313	15.225	15.473	0	282	70	1.13599383354359	0.0459548181875775	1.13599383354359	458.662035579154	0	18.5544409064571						975	29	5	NaN	NaN	NaN	5.671E-12	1	24887	115.05	97.321	1	444100			9882	63	8335	8553	9882	9882		
IMLNTPEDVQALVSGK	16	Oxidation (M)	_IM(Oxidation (M))LNTPEDVQALVSGK_	IM(1)LNTPEDVQALVSGK	IM(66)LNTPEDVQALVSGK	0	1	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.953294	1729.89204	2.1952	0.0019009	-0.16224	-0.00014049	2.033	0.0017604	865.954680922862	14.595	0.17734	14.595	14.524	14.701	1.7764E-15	300	70	1.12400150285141	0.0459991056829794	1.12400150285141	453.78642136423	0	18.5709445235445						728	21	5	NaN	NaN	NaN	0.00048213	1	25324	66.485	52.687	1	185420			9883	63	8335	8554	9883	9883	27	
IMLPWDPTGK	10	Unmodified	_IMLPWDPTGK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.30481	1156.59507	0.1275	7.3859E-05	-0.85262	-0.00049392	-0.72512	-0.00042007	579.304617709314	15.145	0.41674	15.145	15.012	15.429	0	657	52	0.884090832094921	0.0345535384849188	0.884090832094921	358.331580456052	0	14.0049230307148						1426	48	5	NaN	NaN	NaN	0.00043462	1	8245	96.311	81.548	1	2045800			9884	819	8336	8555	9884	9884		
IMMFIGGPATQGPGMVVGDELK	22	Unmodified	_IMMFIGGPATQGPGMVVGDELK_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1124.56236	2247.11017	0.65297	0.0007343	-0.30969	-0.00034826	0.34328	0.00038604	1125.06376345211	17.592	0.11528	17.592	17.53	17.646	0	90	37	1.26329880838669	0.0237683228078447	1.26329880838669	509.089780182052	0	9.57826458254505						380	14	4	NaN	NaN	NaN	7.5625E-08	1	35162	65.421	60.079	1	72874			9885	1850	8337	8556	9885	9885		
IMNEEDPEK	9	Unmodified	_IMNEEDPEK_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.747521	1103.48049	1.1126	0.00061497	-0.44814	-0.00024771	0.66443	0.00036726	552.746967325096	3.306	0.28374	3.306	3.1641	3.4479	0	690	40	0.86171403876517	0.0264636674362559	0.86171403876517	349.460042043672	0	10.7320919920907						366	33	3	NaN	NaN	NaN	0.0093876	1	6799	43.272	17.049	1	78736			9886	2468	8338	8557	9886	9886		
IMNLTVMLDTALGK	14	Unmodified	_IMNLTVMLDTALGK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.414762	1518.81497	1.1061	0.0008411	-2.3516	-0.0017882	-1.2455	-0.0009471	760.914053996725	19.703	0.07981	19.703	19.658	19.738	0	417	49	1.04580932352505	0.0321562992894993	1.04580932352505	422.684491070872	0	12.9966033904641						227	10	3	NaN	NaN	NaN	0.00035195	1	19103	52.837	35.846	1	52278			9887	2614	8339	8558	9887	9887		
IMNTFSVMPSPK	12	Unmodified	_IMNTFSVMPSPK_			0	0	0	Q9BVA1;Q13885;Q9BUF5	Q9BVA1;Q9BUF5	Q9BVA1	TUBB2B;TUBB2A;TUBB6	Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.341066	1350.66758	1.4936	0.0010102	1.2103	0.00081855	2.7039	0.0018288	676.342046057651	11.562	0.20404	11.562	11.465	11.669	0	411	28	1.04982941439551	0.0180891625147663	1.04982941439551	424.785993854716	0	7.31930613818713						442	24	3	NaN	NaN	NaN	4.6262E-05	1	13902	83.438	67.856	1	118650			9888	2761;2745	8340	8559	9888	9888		
IMNTFSVVPSPK	12	Unmodified	_IMNTFSVVPSPK_			0	0	0	P04350;P07437;P68371;Q13509	P04350;P07437;P68371;Q13509	P68371	TUBB4A;TUBB;TUBB4B;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.355031	1318.69551	2.2754	0.0015026	0.90014	0.00059441	3.1755	0.002097	660.355862986418	11.287	0.68291	11.287	11.057	11.74	0	426	157	1.03977710643793	0.104797272647292	1.03977710643793	420.821901121894	0	42.4138858556946						5118	78	6	NaN	NaN	NaN	3.9808E-05	1	12939	87.942	60.206	1	5081700			9889	1449;560;512;1675	8341	8560	9889	9889		
IMNVIGEPIDER	12	Unmodified	_IMNVIGEPIDER_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.358302	1384.70205	2.1904	0.0015187	1.0195	0.00070685	3.2098	0.0022256	693.359293674061	10.942	0.50544	10.942	10.693	11.199	0	465	73	1.01360860968299	0.048374532794458	1.01360860968299	410.028066137185	0	19.568614495298						1905	58	6	NaN	NaN	NaN	0.0010576	1	14979	58.889	46.294	1	1421200			9890	541	8342	8561	9890	9890		
IMNVIGEPIDER	12	Oxidation (M)	_IM(Oxidation (M))NVIGEPIDER_	IM(1)NVIGEPIDER	IM(77)NVIGEPIDER	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.355759	1400.69697	1.6233	0.0011385	-0.36782	-0.00025797	1.2555	0.00088052	701.355124727511	8.7778	0.23967	8.7778	8.7156	8.9553	0	486	43	0.999498404980629	0.0282262646321653	0.999498404980629	404.274519935637	0	11.4168862370181						596	28	4	NaN	NaN	NaN	0.0014778	1	15466	77.358	66.003	1	333490			9891	541	8342	8562	9891	9891	110	
IMQDFESDTFFPEIDLEK	18	Unmodified	_IMQDFESDTFFPEIDLEK_			0	0	0	P00374	P00374	P00374	DHFR	Dihydrofolate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.50883	2203.0031	0.08253	9.0991E-05	3.7911	0.0041797	3.8736	0.0042707	1103.01501481403	18.55	0.079787	18.55	18.506	18.585	0	87	28	1.26527909472281	0.0178225786967057	1.26527909472281	509.950523881699	0	7.18310559402619						182	10	4	NaN	NaN	NaN	0.0032764	1	34713	34.338	33.395	1	37214			9892	473	8343	8563	9892	9892		
IMQEYQLEQK	10	Unmodified	_IMQEYQLEQK_			0	0	0	Q9P032	Q9P032	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.32647	1308.63839	1.5871	0.0010401	0.34248	0.00022444	1.9296	0.0012645	655.326902659539	6.4983	0.1862	6.4983	6.4274	6.6136	0	498	31	0.991429299781895	0.0201783433575858	0.991429299781895	401.286399514964	0	8.16729418418811						391	22	4	NaN	NaN	NaN	2.213E-08	1	12617	130.31	96.915	1	115090			9893	3142	8344	8564	9893	9893		
IMQNTDPHSQEYVEHLK	17	Unmodified	_IMQNTDPHSQEYVEHLK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	517.999374	2067.96839	-0.34622	-0.00017934	0.51236	0.0002654	0.16614	8.606E-05	518.250274117712	5.8155	0.079769	5.8155	5.78	5.8598	0	762	25	0.812773098473386	0.0163386061083168	0.812773098473386	655.414205316618	0	13.1753309239409						182	10	4	NaN	NaN	NaN	0.0026313	1	32840	34.472	32.625	1	52597			9894	21	8345	8565	9894	9894		
IMQNTDPHSQEYVEHLK	17	Unmodified	_IMQNTDPHSQEYVEHLK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.99147	2067.96839	2.2529	0.0023317	-0.98893	-0.0010235	1.2639	0.0013082	1035.49139573943	5.8066	0.05318	5.8066	5.7889	5.8421	0	168	31	1.21171599086077	0.0198749362263475	1.21171599086077	488.562575348903	0	8.01355276391268						157	7	4	NaN	NaN	NaN	0.0029409	1	32841	41.317	38.602	1	28974			9895	21	8345	8565	9895	9895		
IMQNTDPHSQEYVEHLK	17	Unmodified	_IMQNTDPHSQEYVEHLK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.330073	2067.96839	1.4564	0.0010054	1.7788	0.001228	3.2352	0.0022334	690.665875326408	5.8155	0.14186	5.8155	5.7711	5.913	0	588	31	0.93076847747433	0.0202651042983174	0.93076847747433	562.925424975806	0	12.2562621375668						433	17	5	NaN	NaN	NaN	1.5282E-06	1	32842	65.12	49.504	1	191960			9896	21	8345	8565	9896	9896		
IMQSSSEVGYDAMAGDFVNMVEK	23	Unmodified	_IMQSSSEVGYDAMAGDFVNMVEK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1254.5582	2507.10185	0.76093	0.00095463	0.29737	0.00037307	1.0583	0.0013277	1255.06070738195	17.388	0.15074	17.388	17.335	17.486	0	66	94	1.27913350869533	0.0614057649103075	1.27913350869533	515.142270878759	0	24.7297916643645						1395	18	6	NaN	NaN	NaN	5.464E-24	1	36858	147.08	139.44	1	447390			9897	635	8346	8566	9897	9897		
IMQSSSEVGYDAMAGDFVNMVEK	23	Unmodified	_IMQSSSEVGYDAMAGDFVNMVEK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.707892	2507.10185	1.8628	0.0015586	0.83917	0.00070214	2.702	0.0022608	837.043165908627	17.388	0.15962	17.388	17.335	17.495	0	324	58	1.1079963157843	0.0380568517992328	1.1079963157843	669.329434539182	0	22.9897615472587						893	19	6	NaN	NaN	NaN	2.5701E-06	1	36859	77.478	77.198	1	333560			9898	635	8346	8566	9898	9898		
IMQSSSEVGYDAMAGDFVNMVEK	23	Oxidation (M)	_IM(Oxidation (M))QSSSEVGYDAMAGDFVNMVEK_	IM(1)QSSSEVGYDAMAGDFVNMVEK	IM(71)QSSSEVGYDAM(-71)AGDFVNM(-77)VEK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1262.55566	2523.09676	-0.17738	-0.00022395	0.025539	3.2244E-05	-0.15184	-0.0001917	1263.05852213273	16.892	0.088734	16.892	16.847	16.936	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.124256857423	0	9.56265187634045						242	11	4	NaN	NaN	NaN	1.1688E-08	1	36934	77.478	75.854	3	37166			9899	635	8346	8567	9899	9899	181;182;183	
IMQSSSEVGYDAMAGDFVNMVEK	23	Oxidation (M)	_IMQSSSEVGYDAM(Oxidation (M))AGDFVNMVEK_	IM(0.001)QSSSEVGYDAM(0.995)AGDFVNM(0.004)VEK	IM(-29)QSSSEVGYDAM(24)AGDFVNM(-24)VEK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1262.55566	2523.09676	0.67722	0.00085502	-0.23257	-0.00029363	0.44465	0.0005614	1263.05631007614	14.356	0.062064	14.356	14.338	14.4	0	63	22	1.28111162701928	0.0138468290460385	1.28111162701928	515.920872425021	0	5.5763041807478						69	8	3	NaN	NaN	NaN	1.7442E-05	1	36935	42.977	39.902	3	8083			9900	635	8346	8567	9900	9900	181;182;183	
IMQSSSEVGYDAMAGDFVNMVEK	23	Oxidation (M)	_IMQSSSEVGYDAMAGDFVNM(Oxidation (M))VEK_	IMQSSSEVGYDAM(0.009)AGDFVNM(0.991)VEK	IM(-47)QSSSEVGYDAM(-20)AGDFVNM(20)VEK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1262.55566	2523.09676	0.62321	0.00078684	0.052408	6.6169E-05	0.67562	0.00085301	1263.05739677005	15.065	0.053176	15.065	15.038	15.092	0	63	34	1.28111162701928	0.0217622834966473	1.28111162701928	515.920871618426	0	8.76396407089095						170	7	4	NaN	NaN	NaN	0.0028511	1	36936	46.528	45.431	3	26737			9901	635	8346	8567	9901	9901	181;182;183	
IMQSSSEVGYDAMAGDFVNMVEK	23	Oxidation (M)	_IM(Oxidation (M))QSSSEVGYDAMAGDFVNMVEK_	IM(1)QSSSEVGYDAMAGDFVNMVEK	IM(110)QSSSEVGYDAM(-110)AGDFVNM(-130)VEK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.03953	2523.09676	0.78405	0.0006602	1.1634	0.00097961	1.9474	0.0016398	842.374837145283	16.892	0.13305	16.892	16.847	16.98	0	315	49	1.11400032671325	0.0320280154713002	1.11400032671325	672.932881082511	0	19.3471260372486						380	16	5	NaN	NaN	NaN	8.7651E-07	1	36937	127.25	119.6	3	86295			9902	635	8346	8567	9902	9902	181;182;183	
IMQSSSEVGYDAMAGDFVNMVEK	23	Oxidation (M)	_IMQSSSEVGYDAMAGDFVNM(Oxidation (M))VEK_	IMQSSSEVGYDAM(0.002)AGDFVNM(0.998)VEK	IM(-54)QSSSEVGYDAM(-27)AGDFVNM(27)VEK	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.03953	2523.09676	1.1554	0.00097288	3.8261	0.0032217	4.9815	0.0041946	842.377028050124	14.888	0.062063	14.888	14.861	14.923	0	318	37	1.11199926528787	0.0240210084150783	1.11199926528787	671.724092427168	0	14.5103423900437						201	8	5	NaN	NaN	NaN	0.0026808	1	36938	54.418	52.794	3	35103			9903	635	8346	8567	9903	9903	181;182;183	
IMRPDDANVAGNVHGGTILK	20	Unmodified	_IMRPDDANVAGNVHGGTILK_			0	0	1	O00154	O00154	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.365229	2077.07386	2.1413	0.0014847	-1.8798	-0.0013034	0.26145	0.00018128	693.363437442253	7.7576	0.18623	7.7576	7.6956	7.8818	0	492	58	0.995464410099171	0.0383256164617212	0.995464410099171	602.035720186436	0	23.1785183619199						461	22	4	NaN	NaN	NaN	0.066585	1	32978	15.141	13.962	1	102380			9904	53	8347	8568	9904	9904		
IMRPTDVPDQGLLCDLLWSDPDK	23	Unmodified	_IMRPTDVPDQGLLCDLLWSDPDK_			0	0	1	P62136;P36873	P62136;P36873	P36873	PPP1CA;PPP1CC	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	895.440134	2683.29857	1.0611	0.00095013	-1.1411	-0.0010218	-0.079996	-7.1631E-05	895.773623598542	18.515	0.10646	18.515	18.47	18.577	0	447	109	1.02569221487577	0.072561861536383	1.02569221487577	619.386046313545	0	43.8180224811537						834	13	6	NaN	NaN	NaN	3.8676E-06	1	37559	41.261	38.81	1	201540			9905	992;1365	8348	8569	9905	9905		
IMRPTDVPDTGLLCDLLWSDPDK	23	Unmodified	_IMRPTDVPDTGLLCDLLWSDPDK_			0	0	1	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	886.436501	2656.28767	0.75472	0.00066901	-1.247	-0.0011054	-0.49232	-0.00043641	886.769986837119	18.914	0.088666	18.914	18.878	18.967	0	525	49	0.973257487423603	0.0323166232596742	0.973257487423603	587.75302567629	0	19.5161027230271						446	11	5	NaN	NaN	NaN	1.9499E-17	1	37465	94.838	86.35	1	85804			9906	1366	8349	8570	9906	9906		
IMRPTDVPDTGLLCDLLWSDPDK	23	Unmodified	_IMRPTDVPDTGLLCDLLWSDPDK_			0	0	1	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	886.436501	2656.28767	1.0104	0.00089569	-0.73706	-0.00065336	0.27338	0.00024233	886.769982066063	18.914	0.097534	18.914	18.878	18.976	0	459	49	1.01763759082241	0.0322363117711004	1.01763759082241	614.554297487383	0	19.4676023298852						483	12	5	NaN	NaN	NaN	7.1075E-13	1	37466	77.698	72.134	1	103710			9907	1366	8349	8570	9907	9907		
IMSIVDPNR	9	Unmodified	_IMSIVDPNR_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.778959	1043.54336	0.59658	0.00031188	-2.1621	-0.0011303	-1.5655	-0.00081843	522.777970553329	7.9793	0.18641	7.9793	7.8906	8.077	0	699	64	0.85560534332665	0.042749015256945	0.85560534332665	347.228430234393	0	17.3487386182302						448	22	2	NaN	NaN	NaN	0.0002714	1	5319	98.009	67.447	1	123040			9908	671	8350	8571	9908	9908		
IMSSPLSK	8	Oxidation (M)	_IM(Oxidation (M))SSPLSK_	IM(1)SSPLSK	IM(63)SSPLSK	0	1	0	P61254;Q9UNX3	P61254	P61254	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.736228	877.457904	-0.22013	-9.6799E-05	2.1501	0.00094547	1.93	0.00084867	439.737311648052	3.3503	0.079797	3.3503	3.3149	3.3947	0	705	25	0.851531465363931	0.0162977768340994	0.851531465363931	346.425515084999	0	6.63036653857557						132	10	3	NaN	NaN	NaN	0.054918	1	1972	62.88	44.477	1	36265			9909	1339	8351	8572	9909	9909	481	
IMVANIEEVLQR	12	Oxidation (M)	_IM(Oxidation (M))VANIEEVLQR_	IM(1)VANIEEVLQR	IM(110)VANIEEVLQR	0	1	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.887226	1429.7599	1.7221	0.0012328	-3.4974	-0.0025037	-1.7753	-0.0012709	715.884929904171	14.302	0.23051	14.302	14.196	14.427	0	447	64	1.02569221487577	0.0422663641098704	1.02569221487577	414.786884995036	0	17.0923920986593						612	27	3	NaN	NaN	NaN	0.00038394	1	16392	108.93	90.592	1	157330			9910	331	8352	8573	9910	9910	53	
IMVVGSTINDVLAVNTPK	18	Unmodified	_IMVVGSTINDVLAVNTPK_			0	0	0	O14562	O14562	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.018969	1870.02338	1.4288	0.0013374	-0.024262	-2.271E-05	1.4045	0.0013147	936.018524473658	16.094	0.1419	16.094	16.032	16.174	0	210	43	1.18386433251387	0.0278861008115292	1.18386433251387	477.669658003738	0	11.2515799926297						400	17	4	NaN	NaN	NaN	4.348E-10	1	28942	97.949	95.234	1	92595			9911	105	8353	8574	9911	9911		
IMWNELETLVR	11	Unmodified	_IMWNELETLVR_			0	0	0	Q9NVM9	Q9NVM9	Q9NVM9	ASUN	Protein asunder homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.371212	1402.72787	0.035097	2.4651E-05	-0.73039	-0.00051301	-0.69529	-0.00048835	702.371367581738	17.335	0.10639	17.335	17.291	17.397	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.268799307987	0	8.97338285025398						278	13	4	NaN	NaN	NaN	0.00013899	1	15550	87.895	78.381	1	68523			9912	3070	8354	8575	9912	9912		
IMYDIFPFK	9	Unmodified	_IMYDIFPFK_			0	0	0	Q9NVM9	Q9NVM9	Q9NVM9	ASUN	Protein asunder homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.304278	1172.594	-0.82895	-0.00048684	-0.68398	-0.0004017	-1.5129	-0.00088855	587.304271593919	17.069	0.14184	17.069	17.016	17.158	0	621	34	0.908462957275599	0.0223240803246195	0.908462957275599	368.150661691136	0	9.04673644349981						272	17	3	NaN	NaN	NaN	0.010551	1	8671	37.722	28.329	1	62812			9913	3070	8355	8576	9913	9913		
IMYDLTSKPPGTTEWE	16	Unmodified	_IMYDLTSKPPGTTEWE_			0	0	1	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.44276	1866.87097	3.0453	0.0028457	-0.82292	-0.00076897	2.2224	0.0020767	934.943374259888	12.928	0.23057	12.928	12.804	13.034	0	243	94	1.16194328902838	0.0618965501171376	1.16194328902838	468.830712260247	0	24.9745438971772						1323	27	5	NaN	NaN	NaN	1.4913E-23	1	28861	213.77	201.75	1	492850			9914	1155	8356	8577	9914	9914		
IMYLSEAYFR	10	Unmodified	_IMYLSEAYFR_			0	0	0	Q9Y6N5	Q9Y6N5	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.820824	1291.62709	1.2696	0.00082119	2.9291	0.0018946	4.1987	0.0027158	646.82309666727	13.912	0.11526	13.912	13.877	13.992	0	504	31	0.987393073566096	0.0201811333938051	0.987393073566096	399.707688461543	0	8.16954705813203						202	14	3	NaN	NaN	NaN	0.00078997	1	12122	56.378	48.732	1	51027			9915	3473	8357	8578	9915	9915		
IMYTVFEHTFHVR	13	Unmodified	_IMYTVFEHTFHVR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.616937	1678.82898	-0.62811	-0.00035213	-0.19935	-0.00011176	-0.82745	-0.00046389	560.616825503717	11.899	0.20396	11.899	11.846	12.05	0	690	46	0.86171403876517	0.0305307631752075	0.86171403876517	521.965596438525	0	18.4933832960488						724	24	5	NaN	NaN	NaN	4.9398E-08	1	23883	129.28	116.68	1	404660			9916	1035	8358	8579	9916	9916		
IMYTVFEHTFHVR	13	Unmodified	_IMYTVFEHTFHVR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.421768	1678.82898	1.2693	0.0010668	0.42676	0.00035866	1.6961	0.0014254	840.422144107066	11.908	0.1153	11.908	11.855	11.97	0	240	37	1.16393748060522	0.0239286585305469	1.16393748060522	470.023134693906	0	9.66290997494093						389	14	5	NaN	NaN	NaN	3.3108E-11	1	23885	116.13	105.88	1	127380			9917	1035	8358	8579	9917	9917		
INAANYASVK	10	Unmodified	_INAANYASVK_			0	0	0	Q96IU4	Q96IU4	Q96IU4	ABHD14B	Alpha/beta hydrolase domain-containing protein 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.782556	1049.55056	1.5008	0.00078908	0.39423	0.00020728	1.895	0.00099636	525.783321195363	5.1415	0.20398	5.1415	5.0883	5.2923	0	663	46	0.880024865079826	0.0304926449170472	0.880024865079826	357.111919915193	0	12.3738401057921						360	24	3	NaN	NaN	NaN	0.0092268	1	5461	65.933	59.242	1	139180			9918	2560	8359	8580	9918	9918		
INAGFGDDLNCIFNDDNAEK	20	Unmodified	_INAGFGDDLNCIFNDDNAEK_			0	0	0	P24928	P24928	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.48949	2240.96443	1.1567	0.0012972	0.050244	5.6348E-05	1.2069	0.0013535	1121.99151670482	15.739	0.079819	15.739	15.704	15.783	0	126	46	1.23951419873743	0.0297572623085223	1.23951419873743	499.513369590703	0	11.9919161722109						283	10	4	NaN	NaN	NaN	5.565E-06	1	35104	61.867	59.121	1	54538			9919	833	8360	8581	9919	9919		
INAGMLAQFIDK	12	Unmodified	_INAGMLAQFIDK_			0	0	0	P35244	P35244	P35244	RPA3	Replication protein A 14 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.852655	1319.69076	0.89586	0.00059203	-0.89317	-0.00059025	0.0026919	1.779E-06	660.852461645576	15.801	0.26605	15.801	15.73	15.996	0	531	49	0.969216233931596	0.0323345110128962	0.969216233931596	392.261219899408	0	13.0864241546172						626	31	4	NaN	NaN	NaN	0.00012939	1	12976	88.24	74.246	1	391740			9920	963	8361	8582	9920	9920		
INALTAASEAACLIVSVDETIK	22	Unmodified	_INALTAASEAACLIVSVDETIK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.738397	2288.19336	0.82238	0.00062809	-0.40158	-0.0003067	0.4208	0.00032138	764.072627416327	20.155	0.070945	20.155	20.146	20.217	0	453	37	1.02166545906632	0.0241672134976301	1.02166545906632	617.503158255634	0	14.6068661992967						196	9	6	NaN	NaN	NaN	1.0114E-06	1	35549	138.87	137.02	1	104000			9921	2679	8362	8583	9921	9921		
INAWNSPTLPIYEPGLK	17	Unmodified	_INAWNSPTLPIYEPGLK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.012001	1912.00945	2.0011	0.0019151	-2.1808	-0.0020871	-0.17967	-0.00017195	957.510766533047	15.597	0.18621	15.597	15.491	15.677	0	243	79	1.16194328902838	0.0518454593782931	1.16194328902838	468.749068871814	0	20.9154018430006						870	22	4	NaN	NaN	NaN	1.5478E-06	1	29881	98.865	77.198	1	260430			9922	275	8363	8584	9922	9922		
INDALSCEYECR	12	Unmodified	_INDALSCEYECR_			0	0	0	Q52LJ0	Q52LJ0	Q52LJ0	FAM98B	Protein FAM98B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.32159	1528.62863	1.9906	0.0015235	-0.59861	-0.00045813	1.392	0.0010653	765.321183403804	6.7555	0.11528	6.7555	6.72	6.8353	0	480	43	1.00353128488872	0.0282184646673942	1.00353128488872	405.573462813178	0	11.4043882864055						325	14	4	NaN	NaN	NaN	0.00054492	1	19369	76.255	72.75	1	84146			9923	1945	8364	8585	9923	9923		
INDFVLSPGPQPYK	14	Unmodified	_INDFVLSPGPQPYK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.914298	1573.81404	1.5535	0.0012241	-1.5988	-0.0012598	-0.045311	-3.5701E-05	788.414978824846	11.722	0.17734	11.722	11.633	11.811	0	384	85	1.06790610341098	0.0562037435134362	1.06790610341098	431.47908670791	0	22.7086818244451						1000	21	5	NaN	NaN	NaN	0.026575	1	20791	47.361	44.69	1	297990			9924	2796	8365	8586	9924	9924		
INDRFEFPEQLPLDEFLQK	19	Unmodified	_INDRFEFPEQLPLDEFLQK_			0	0	1	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	793.405747	2377.19541	0.23298	0.00018485	-0.57432	-0.00045567	-0.34134	-0.00027082	793.739458468586	18.568	0.16853	18.568	18.47	18.639	0	600	49	0.922661313351899	0.0324241729460041	0.922661313351899	557.538274288961	0	19.5930155171328						562	20	4	NaN	NaN	NaN	5.4326E-05	1	36244	61.503	60.324	1	123860			9925	2452	8366	8587	9925	9925		
INEAIVAVQAIIADPK	16	Unmodified	_INEAIVAVQAIIADPK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.982712	1663.95087	1.7137	0.0014275	0.75214	0.00062652	2.4658	0.002054	832.983237486192	17.388	0.15962	17.388	17.335	17.495	0	276	40	1.13998907770044	0.0259637344402126	1.13998907770044	460.385946877739	0	10.4854850792531						532	19	5	NaN	NaN	NaN	8.732E-07	1	23464	111.38	100.02	1	184240			9926	3324	8367	8588	9926	9926		
INEAIVAVQAIIADPK	16	Unmodified	_INEAIVAVQAIIADPK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.982712	1663.95087	1.2263	0.0010215	1.6112	0.0013421	2.8375	0.0023636	832.984304726734	17.397	0.09754	17.397	17.344	17.442	0	210	31	1.18386433251387	0.0199159054005791	1.18386433251387	478.105017398038	0	8.04306206085494						216	12	3	NaN	NaN	NaN	0.00041886	1	23465	63.79	59.807	1	50597			9927	3324	8367	8588	9927	9927		
INEAVECLLSLK	12	Unmodified	_INEAVECLLSLK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.876327	1387.7381	1.5155	0.0010531	-1.6875	-0.0011726	-0.17207	-0.00011956	694.876080072101	15.482	0.20406	15.482	15.42	15.624	0	474	43	1.00756305028564	0.0282184646673942	1.00756305028564	407.57369315692	0	11.4147733548262						744	24	5	NaN	NaN	NaN	0.00049906	1	15080	90.689	68.685	1	377720			9928	565	8368	8589	9928	9928		
INEELESQYQQSMDSK	16	Unmodified	_INEELESQYQQSMDSK_			0	0	0	O00193	O00193	O00193	SMAP	Small acidic protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.930745	1927.84694	3.1253	0.0030157	-1.9098	-0.0018428	1.2155	0.0011729	965.430488047342	7.9527	0.18635	7.9527	7.9083	8.0947	0	315	94	1.11400032671325	0.0619902936331636	1.11400032671325	449.381403800035	0	25.0065323203609						1380	22	5	NaN	NaN	NaN	2.7138E-70	1	30228	322.02	312.87	1	535770			9929	60	8369	8590	9929	9929		
INEELESQYQQSMDSK	16	Oxidation (M)	_INEELESQYQQSM(Oxidation (M))DSK_	INEELESQYQQSM(1)DSK	INEELESQYQQSM(95)DSK	0	1	0	O00193	O00193	O00193	SMAP	Small acidic protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.928202	1943.84185	3.2377	0.00315	-0.51744	-0.00050344	2.7202	0.0026466	973.429455675066	6.1259	0.062073	6.1259	6.0904	6.1525	0	309	55	1.11800162319566	0.0360116819912435	1.11800162319566	450.968977521051	0	14.5260535132177						236	8	3	NaN	NaN	NaN	9.987E-06	1	30596	95.345	86.539	1	42173			9930	60	8369	8591	9930	9930	26	
INEGDLIAEVETDK	14	Unmodified	_INEGDLIAEVETDK_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.385768	1544.75698	1.6359	0.0012652	1.4417	0.001115	3.0776	0.0023802	773.387000307095	13.185	0.20397	13.185	13.141	13.345	0	411	43	1.04982941439551	0.0281367598695683	1.04982941439551	424.244914930066	0	11.3703018162678						490	24	3	NaN	NaN	NaN	9.8541E-08	1	19878	135.21	124.42	1	161090			9931	626	8370	8592	9931	9931		
INEILSNALK	10	Unmodified	_INEILSNALK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.826963	1113.63937	1.3738	0.00076633	-0.16253	-9.0663E-05	1.2112	0.00067566	557.826796963279	10.383	0.19508	10.383	10.321	10.516	0	588	58	0.93076847747433	0.0385170505525262	0.93076847747433	377.421945836807	0	15.6184706715425						525	23	4	NaN	NaN	NaN	2.4184E-07	1	7094	150.53	89.944	1	315060			9932	1206	8371	8593	9932	9932		
INELTGIK	8	Unmodified	_INELTGIK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.263468	886.512382	-0.76164	-0.00033837	-1.3348	-0.00059301	-2.0965	-0.00093138	444.263140692461	6.0283	0.22168	6.0283	5.984	6.2057	0	774	37	0.804600385996946	0.0245249645792073	0.804600385996946	327.281239899204	0	9.97583515451794						321	26	3	NaN	NaN	NaN	0.015784	1	2100	45.489	13.362	1	99894			9933	981	8372	8594	9933	9933		
INEMVHFDLPGQEER	15	Unmodified	_INEMVHFDLPGQEER_			0	0	0	Q9NVI7	Q9NVI7	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.289437	1812.84648	-1.8535	-0.0011219	-0.29751	-0.00018008	-2.151	-0.001302	605.289272030478	11.766	0.1064	11.766	11.722	11.828	0	765	88	0.810730346695089	0.0592316220123406	0.810730346695089	490.786284189306	0	35.8566418445358						784	13	4	NaN	NaN	NaN	0.00031027	1	27546	66.485	61.098	1	188440			9934	3068	8373	8595	9934	9934		
INEMVHFDLPGQEER	15	Oxidation (M)	_INEM(Oxidation (M))VHFDLPGQEER_	INEM(1)VHFDLPGQEER	INEM(60)VHFDLPGQEER	0	1	0	Q9NVI7	Q9NVI7	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.621076	1828.8414	-1.6525	-0.0010091	-0.38433	-0.00023468	-2.0369	-0.0012437	610.955179859155	10.019	0.079803	10.019	9.975	10.055	0	807	22	0.782101955086014	0.0143271514943355	0.782101955086014	473.424306861168	0	8.67255441747972						142	10	3	NaN	NaN	NaN	0.00016091	1	27928	59.67	47.652	1	31147			9935	3068	8373	8596	9935	9935	633	
INEVQTDVGVDTK	13	Unmodified	_INEVQTDVGVDTK_			0	0	0	Q12792	Q12792	Q12792	TWF1	Twinfilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.362096	1416.70964	2.2847	0.0016207	-1.9569	-0.0013881	0.32786	0.00023257	709.36116394282	6.1702	0.15964	6.1702	6.117	6.2767	0	486	49	0.999498404980629	0.0322585904613818	0.999498404980629	404.229853056251	0	13.0464293059666						356	19	4	NaN	NaN	NaN	2.3251E-07	1	15989	112.73	91.639	1	210350			9936	1595	8374	8597	9936	9936		
INFVIDNNK	9	Unmodified	_INFVIDNNK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.790381	1075.56621	0.52432	0.0002825	-2.0184	-0.0010875	-1.4941	-0.00080498	538.789464131186	8.8044	0.19518	8.8044	8.6979	8.8931	0	672	46	0.873923798053065	0.0305095775467987	0.873923798053065	354.525031973339	0	12.3768330595514						351	23	3	NaN	NaN	NaN	0.00070036	1	6104	76.605	41.673	1	177710			9937	344	8375	8598	9937	9937		
INHLEYEDQYK	11	Unmodified	_INHLEYEDQYK_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.564896	1450.67286	-0.1483	-7.1862E-05	-0.9352	-0.00045317	-1.0835	-0.00052503	484.564418190835	4.9908	0.088657	4.9908	4.9642	5.0529	0	810	25	0.78005493425781	0.0163773081327158	0.78005493425781	473.109369994957	0	9.9329644523749						187	11	4	NaN	NaN	NaN	0.00032458	1	16993	66.664	62.137	1	52649			9938	246	8376	8599	9938	9938		
INHLEYEDQYK	11	Unmodified	_INHLEYEDQYK_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.343706	1450.67286	2.4386	0.0017713	-0.15536	-0.00011285	2.2833	0.0016584	726.343778257871	4.9908	0.070933	4.9908	4.9642	5.0351	0	453	43	1.02166545906632	0.0282028744341156	1.02166545906632	413.101389946654	0	11.4035827734368						202	9	3	NaN	NaN	NaN	0.00062698	1	16994	60	57.329	1	46541			9939	246	8376	8599	9939	9939		
INISEGNCPER	11	Unmodified	_INISEGNCPER_			0	0	0	Q15365;Q15366;P57721	Q15365;Q15366;P57721	Q15365	PCBP1;PCBP2;PCBP3	Poly(rC)-binding protein 1;Poly(rC)-binding protein 2;Poly(rC)-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.801151	1287.58775	2.4684	0.0015916	0.9474	0.00061088	3.4158	0.0022025	644.802250686106	4.6627	0.38127	4.6627	4.5829	4.9642	0	588	79	0.93076847747433	0.0526893075878215	0.93076847747433	376.797937823497	0	21.3299256742251						1432	44	6	NaN	NaN	NaN	4.3217E-17	1	11982	179.31	138.81	1	1715800			9940	1833;1834;1295	8377	8600	9940	9940		
INLAEDVLAWEHER	14	Unmodified	_INLAEDVLAWEHER_			0	0	0	Q969V3	Q969V3	Q969V3	NCLN	Nicalin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.621404	1693.84238	-0.25358	-0.00014343	-4.2694	-0.0024149	-4.523	-0.0025583	566.285877559078	15.331	0.097539	15.331	15.287	15.384	0	660	37	0.882057989648486	0.0243958062014034	0.882057989648486	534.249819305754	0	14.7761884228405						324	12	5	NaN	NaN	NaN	0.034991	1	24311	35.33	35.33	1	82755			9941	2463	8378	8601	9941	9941		
INLEAAELGEISDIHTK	17	Unmodified	_INLEAAELGEISDIHTK_			0	0	0	Q9UHD2	Q9UHD2	Q9UHD2	TBK1	Serine/threonine-protein kinase TBK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.98618	1851.95781	1.0185	0.00094415	0.77141	0.00071509	1.7899	0.0016592	926.987053440935	12.99	0.06208	12.99	12.963	13.026	0	120	25	1.2434810169581	0.0158672740006425	1.2434810169581	501.76003882435	0	6.40264218755436						112	8	3	NaN	NaN	NaN	5.5862E-10	1	28547	151.08	120.73	1	21360			9942	3214	8379	8602	9942	9942		
INLNLIYDHNPK	12	Unmodified	_INLNLIYDHNPK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.264781	1452.77251	-1.5695	-0.00076163	-0.53517	-0.0002597	-2.1047	-0.0010213	485.264632752421	10.277	0.088678	10.277	10.25	10.339	0	801	37	0.78619514174348	0.024562543988738	0.78619514174348	476.826950512701	0	14.8971703399376						278	11	3	NaN	NaN	NaN	0.0381	1	17057	32.14	30.341	1	88881			9943	408	8380	8603	9943	9943		
INLPAPNPDHVGGYK	15	Unmodified	_INLPAPNPDHVGGYK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.27909	1590.81544	-0.71274	-0.00037866	-1.1703	-0.00062175	-1.883	-0.0010004	531.278424499194	8.3253	0.23068	8.3253	8.1745	8.4051	0	864	31	0.743159753061487	0.0205230469262404	0.743159753061487	450.357357874522	0	12.4370367894126						363	27	3	NaN	NaN	NaN	3.9509E-05	1	21300	97.175	68.528	1	86441			9944	3248	8381	8604	9944	9944		
INLWHLEITDR	11	Unmodified	_INLWHLEITDR_			0	0	0	P63151;Q66LE6	P63151	P63151	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.589376	1408.7463	-1.166	-0.0005487	-1.4531	-0.00068381	-2.6191	-0.0012325	470.588730256247	13.868	0.1064	13.868	13.824	13.93	0	828	28	0.767766820543916	0.0184385915537137	0.767766820543916	465.787244639282	0	11.1862879783591						220	13	4	NaN	NaN	NaN	0.0040648	1	15726	62.271	59.169	1	70616			9945	1428	8382	8605	9945	9945		
INLWHLEITDR	11	Unmodified	_INLWHLEITDR_			0	0	0	P63151;Q66LE6	P63151	P63151	PPP2R2A;PPP2R2D	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.380426	1408.7463	2.0049	0.0014142	-0.47424	-0.00033452	1.5307	0.0010797	705.379599906373	13.859	0.11525	13.859	13.815	13.93	0	438	34	1.03173026378327	0.0221364589535984	1.03173026378327	417.288268041848	0	8.95319730513103						268	14	4	NaN	NaN	NaN	4.083E-05	1	15727	71.066	57.071	1	87578			9946	1428	8382	8605	9946	9946		
INMLVIELK	9	Unmodified	_INMLVIELK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.825378	1071.6362	0.053954	2.8964E-05	-3.0359	-0.0016298	-2.982	-0.0016008	536.823419858877	15.083	0.11528	15.083	15.03	15.145	0	651	61	0.888155670855968	0.0406484069793801	0.888155670855968	360.315194379024	0	16.4906211180947						368	14	4	NaN	NaN	NaN	0.0007579	1	6007	103.8	64.48	1	107640			9947	1737	8383	8606	9947	9947		
INMVEELEK	9	Unmodified	_INMVEELEK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.783907	1103.55326	0.43578	0.00024089	-1.1787	-0.00065156	-0.74291	-0.00041067	552.783413268016	10.259	0.31919	10.259	10.135	10.454	0	639	67	0.896281965493857	0.0446884460712992	0.896281965493857	363.478447981797	0	18.1229653681182						900	37	4	NaN	NaN	NaN	0.00010345	1	6810	93.467	71.081	1	389430			9948	1801	8384	8607	9948	9948		
INNAAFEAVVVTNTIPQEDK	20	Unmodified	_INNAAFEAVVVTNTIPQEDK_			0	0	0	P11908	P11908	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1087.06041	2172.10626	0.95214	0.001035	-0.13546	-0.00014726	0.81668	0.00088778	1087.56189255365	14.054	0.13299	14.054	13.983	14.116	0	126	58	1.23951419873743	0.0376770419000658	1.23951419873743	499.610935752412	0	15.1864836879228						573	16	4	NaN	NaN	NaN	1.7292E-11	1	34344	146.48	138.9	1	127330			9949	660	8385	8608	9949	9949		
INNACFEAVVVTNTIPQEDK	20	Unmodified	_INNACFEAVVVTNTIPQEDK_			0	0	0	P60891	P60891	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1131.55717	2261.0998	1.5484	0.0017521	-2.9722	-0.0033633	-1.4238	-0.0016112	1131.55312901759	13.504	0.13301	13.504	13.451	13.584	0	99	43	1.25735632164274	0.0277335103351601	1.25735632164274	506.675792226411	0	11.1757487343984						289	16	3	NaN	NaN	NaN	8.3783E-06	1	35289	71.935	68.861	1	57051			9950	1313	8386	8609	9950	9950		
INNFSADIK	9	Unmodified	_INNFSADIK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.269281	1020.52401	0.52434	0.00026808	-3.8973	-0.0019926	-3.3729	-0.0017245	511.268256168838	6.6845	0.32806	6.6845	6.587	6.9151	8.8818E-16	711	82	0.847456455381371	0.0549935810032586	0.847456455381371	344.022391415221	0	22.3244783010282						1103	38	3	NaN	NaN	NaN	0.011627	1	4750	54.436	26.732	1	821720			9951	683	8387	8610	9951	9951		
INNVPAEGENEVNNELANR	19	Unmodified	_INNVPAEGENEVNNELANR_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1048.50379	2094.99302	2.7789	0.0029137	-1.47	-0.0015413	1.3089	0.0013724	1049.00356472511	9.0085	0.12415	9.0085	8.9553	9.0794	0	204	76	1.18784641916898	0.0498137386052175	1.18784641916898	478.897182635723	0	20.0831173875832						577	15	4	NaN	NaN	NaN	3.572E-07	1	33246	77.431	72.089	1	130210			9952	3057	8388	8611	9952	9952		
INPDEREEMK	10	Unmodified	_INPDEREEMK_			0	0	1	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.798077	1259.5816	2.4305	0.0015331	-0.55561	-0.00035048	1.8749	0.0011827	630.79794688208	2.7828	0.15961	2.7828	2.7562	2.9158	0	573	28	0.940896116921038	0.0182247029861181	0.940896116921038	380.987735810867	0	7.37954828555149						195	19	3	NaN	NaN	NaN	0.061785	1	11188	74.269	59.506	1	34420			9953	1109	8389	8612	9953	9953		
INPDGSQSVVEVPYAR	16	Unmodified	_INPDGSQSVVEVPYAR_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.939033	1729.86351	3.2449	0.0028099	-1.3177	-0.0011411	1.9272	0.0016688	865.93783294097	9.842	0.20393	9.842	9.7711	9.975	0	378	67	1.07192009927972	0.0441357211751947	1.07192009927972	432.759967702717	0	17.8186539119358						1077	24	5	NaN	NaN	NaN	1.9438E-24	1	25321	196.42	185.64	1	661560			9954	3341	8390	8613	9954	9954		
INPICNDHYR	10	Unmodified	_INPICNDHYR_			0	0	0	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	434.540028	1300.59825	-0.58893	-0.00025591	-1.0812	-0.00046983	-1.6701	-0.00072574	434.539662717591	4.2637	0.20395	4.2637	4.2283	4.4322	0	867	28	0.741107305531458	0.0184746054874579	0.741107305531458	449.976221585389	0	11.2171788221215						378	24	4	NaN	NaN	NaN	0.01128	1	12358	34.781	28.09	1	141520			9955	2574	8391	8614	9955	9955		
INPVCPADLVIDHSIQVDFNR	21	Unmodified	_INPVCPADLVIDHSIQVDFNR_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.077636	2421.21108	1.0103	0.00081637	-3.8968	-0.0031489	-2.8865	-0.0023325	808.408506316671	16.165	0.08868	16.165	16.111	16.2	0	528	46	0.971237000454584	0.0303240911263755	0.971237000454584	586.829226569407	0	18.322060355796						267	11	4	NaN	NaN	NaN	0.00093696	1	36445	44.571	41.497	1	50018			9956	793	8392	8615	9956	9956		
INPYMSSPCHIEMILTEK	18	Unmodified	_INPYMSSPCHIEMILTEK_			0	0	0	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.680949	2162.02102	0.83499	0.0006026	-1.9246	-0.0013889	-1.0896	-0.00078635	722.013370722043	13.992	0.37241	13.992	13.77	14.143	0	621	124	0.908462957275599	0.0830468083834724	0.908462957275599	549.275843331779	0	50.2118499664991						1584	43	7	NaN	NaN	NaN	2.3713E-07	1	34204	108.34	91.578	1	773070			9957	756	8393	8616	9957	9957		
INQDPQVMLAPLISIALK	18	Unmodified	_INQDPQVMLAPLISIALK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.566086	1963.11762	0.39351	0.00038665	1.2867	0.0012643	1.6802	0.001651	983.068465115443	20.057	0.026607	20.057	20.04	20.066	0	123	46	1.24149774378079	0.0297613419787592	1.24149774378079	500.748816519749	0	12.0040143838833						143	4	5	NaN	NaN	NaN	4.0379E-05	1	30989	78.888	69.309	1	53562			9958	991	8394	8617	9958	9958		
INQQEEPGFEVITR	14	Unmodified	_INQQEEPGFEVITR_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.420476	1658.8264	2.7252	0.0022631	-1.559	-0.0012946	1.1662	0.00096846	830.419383127457	10.135	0.12413	10.135	10.073	10.197	0	384	49	1.06790610341098	0.0321075493337244	1.06790610341098	431.286162774852	0	12.9670030951373						410	15	4	NaN	NaN	NaN	1.339E-05	1	23290	68.108	59.634	1	119260			9959	2339	8395	8618	9959	9959		
INQVFHGSCITEGNELTK	18	Unmodified	_INQVFHGSCITEGNELTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.001956	2045.98404	0.55347	0.00037802	0.058987	4.0289E-05	0.61246	0.00041831	683.336392302546	8.3785	0.13306	8.3785	8.3342	8.4672	0	666	49	0.877991458330206	0.032536775783098	0.877991458330206	531.044096781747	0	19.6795339453373						466	16	5	NaN	NaN	NaN	4.6823E-07	1	32458	97.949	85.267	1	173820			9960	1465	8396	8619	9960	9960		
INQVFHGSCITEGNELTK	18	Unmodified	_INQVFHGSCITEGNELTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.9993	2045.98404	2.3298	0.0023857	-0.9418	-0.00096441	1.388	0.0014213	1024.49985555172	8.3697	0.070992	8.3697	8.3342	8.4051	0	186	64	1.1997861197946	0.0417746321757311	1.1997861197946	483.787131648202	0	16.8446935187211						405	9	4	NaN	NaN	NaN	0.00014406	1	32459	65.12	62.731	1	117240			9961	1465	8396	8619	9961	9961		
INQVFHGSCITEGNELTK	18	Unmodified	_INQVFHGSCITEGNELTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.001956	2045.98404	1.4151	0.00096653	0.49276	0.00033656	1.9079	0.0013031	683.336380790388	8.3785	0.070995	8.3785	8.343	8.414	0	576	100	0.938871150116794	0.0668147376210596	0.938871150116794	567.866550089186	0	40.4122062364632						697	9	4	NaN	NaN	NaN	4.7122E-05	1	32460	79.235	52.719	1	178850			9962	1465	8396	8619	9962	9962		
INSITVDNCK	10	Unmodified	_INSITVDNCK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.289888	1162.56522	1.471	0.00085653	-1.8215	-0.0010607	-0.35058	-0.00020414	582.290381483299	4.6007	0.26598	4.6007	4.4943	4.7603	0	621	49	0.908462957275599	0.0324556427464261	0.908462957275599	368.187588991119	0	13.1538273038673						497	31	4	NaN	NaN	NaN	3.9134E-10	1	8405	146.03	73.538	1	209030			9963	1516	8397	8620	9963	9963		
INSYGYGDHYIHIK	14	Unmodified	_INSYGYGDHYIHIK_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.610728	1678.81036	0.652	0.00036552	-0.13955	-7.8235E-05	0.51245	0.00028728	560.610409095738	7.3585	0.14188	7.3585	7.2875	7.4294	-8.8818E-16	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	524.431598745595	0	14.7936794260024						339	17	4	NaN	NaN	NaN	0.00020682	1	23879	44.82	41.084	1	87517			9964	2520	8398	8621	9964	9964		
INSYGYGDHYIHIK	14	Unmodified	_INSYGYGDHYIHIK_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.412454	1678.81036	2.6779	0.0022505	-1.0048	-0.00084442	1.6731	0.0014061	840.411877483488	7.3585	0.053207	7.3585	7.3319	7.3851	0	285	49	1.13399579921816	0.0319839576220251	1.13399579921816	457.932082975979	0	12.9158153370299						182	7	3	NaN	NaN	NaN	1.7911E-08	1	23880	110.91	72.806	1	28827			9965	2520	8398	8621	9965	9965		
INVLLQAFISQLK	13	Unmodified	_INVLLQAFISQLK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.953227	1485.8919	0.43995	0.0003273	0.87381	0.00065008	1.3138	0.00097738	743.953799366871	19.969	0.026603	19.969	19.96	19.986	0	381	43	1.06991323971056	0.0280941036643514	1.06991323971056	432.513073230371	0	11.3570583712082						95	4	3	NaN	NaN	NaN	2.3148E-05	1	18114	70.195	66.587	1	35418			9966	350	8399	8622	9966	9966		
INVNEIFYDLVR	12	Unmodified	_INVNEIFYDLVR_			0	0	0	P61224;A6NIZ1;P62834	P61224;P62834	P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.901191	1493.78783	1.048	0.00078377	-0.29286	-0.00021903	0.7551	0.00056474	747.901090593145	19.747	0.14188	19.747	19.703	19.845	0	453	67	1.02166545906632	0.0443004570103382	1.02166545906632	412.98873861969	0	17.9076132002108						645	17	5	NaN	NaN	NaN	2.3966E-11	1	18355	175.64	148.69	1	379940			9967	1401;1336	8400	8623	9967	9967		
INVSGLTTK	9	Unmodified	_INVSGLTTK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.7742	931.533846	-0.71177	-0.00033224	-0.33915	-0.00015831	-1.0509	-0.00049054	466.774213981084	6.454	0.1596	6.454	6.4185	6.5781	0	759	43	0.814815566123307	0.0285965426373002	0.814815566123307	331.192028238222	0	11.6234241838416						327	19	3	NaN	NaN	NaN	0.0013369	1	2905	54.436	22.309	1	92426			9968	736	8401	8624	9968	9968		
INVYSDLNDPVVRPLGSENLLLR	23	Unmodified	_INVYSDLNDPVVRPLGSENLLLR_			0	0	1	P98196	P98196	P98196	ATP11A	Probable phospholipid-transporting ATPase IH	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	866.141293	2595.40205	1.1972	0.001037	0.35271	0.0003055	1.5499	0.0013425	866.476206868273	16.138	0.088688	16.138	16.103	16.191	0	471	37	1.00957851518677	0.0241905964234823	1.00957851518677	609.761851105666	0	14.6105554274834						274	11	5	NaN	NaN	NaN	1.5555E-06	1	37231	48.476	40.829	1	57219			9969	1493	8402	8625	9969	9969		
INVYYNEATGGK	12	Unmodified	_INVYYNEATGGK_			0	0	0	P68371	P68371	P68371	TUBB4B	Tubulin beta-4B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.827692	1327.64083	2.0528	0.0013648	1.2104	0.0008047	3.2632	0.0021695	664.82857753794	6.658	0.45219	6.658	6.5693	7.0214	0	525	109	0.973257487423603	0.0727527403068375	0.973257487423603	393.872346464878	0	29.4426633308108						1425	52	4	NaN	NaN	NaN	2.1389E-12	1	13208	195.3	176.8	1	1960000			9970	1449	8403	8626	9970	9970		
INVYYNESSSQK	12	Unmodified	_INVYYNESSSQK_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.341163	1430.66777	2.0103	0.00144	-0.050627	-3.6266E-05	1.9597	0.0014038	716.340662062578	5.5228	0.27489	5.5228	5.4076	5.6825	0	489	43	0.997481546940468	0.0282418742669083	0.997481546940468	403.376108686911	0	11.420860244235						354	32	2	NaN	NaN	NaN	0.00043237	1	16405	63.212	49.938	1	115950			9971	2745	8404	8627	9971	9971		
INYEESMMVR	10	Unmodified	_INYEESMMVR_			0	0	0	Q8NEJ9	Q8NEJ9	Q8NEJ9	NGDN	Neuroguidin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.291573	1270.56859	0.91613	0.00058293	1.564	0.00099513	2.4801	0.0015781	636.292817922493	8.8399	0.10664	8.8399	8.7955	8.9021	0	558	25	0.951016745717027	0.016187402676465	0.951016745717027	385.049661162908	0	6.55398965764903						141	13	3	NaN	NaN	NaN	0.056675	1	11516	15.148	12.046	1	25057			9972	2311	8405	8628	9972	9972		
INYTEGR	7	Unmodified	_INYTEGR_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.714142	851.413731	-0.19629	-8.3758E-05	-0.70544	-0.00030102	-0.90173	-0.00038478	426.714149996304	2.8892	0.27485	2.8892	2.8538	3.1286	0	819	49	0.773912161060781	0.0327637483280586	0.773912161060781	314.996208595046	0	13.3354365288106						684	32	3	NaN	NaN	NaN	0.0092387	1	1578	66.087	41.268	1	216900			9973	546	8406	8629	9973	9973		
IPAANILGHENK	12	Unmodified	_IPAANILGHENK_			0	0	0	P26440	P26440	P26440	IVD	Isovaleryl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.854044	1275.69353	1.6017	0.0010232	0.11679	7.4613E-05	1.7184	0.0010978	638.853950540443	6.3121	0.097573	6.3121	6.2678	6.3653	0	474	28	1.00756305028564	0.0181416924529938	1.00756305028564	407.926632080493	0	7.34492943195153						166	12	3	NaN	NaN	NaN	0.0036553	1	11657	75.474	66.497	1	43159			9974	853	8407	8630	9974	9974		
IPAEANPLADHVSATR	16	Unmodified	_IPAEANPLADHVSATR_			0	0	0	Q9NX47	Q9NX47	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.625037	1660.85328	0.78268	0.00043409	0.50614	0.00028072	1.2888	0.00071481	554.625542471459	7.4294	0.088646	7.4294	7.3851	7.4738	0	639	34	0.896281965493857	0.0223395647977513	0.896281965493857	542.952450024604	0	13.5329303794917						216	11	4	NaN	NaN	NaN	0.0019896	1	23376	39.166	28.915	1	61968			9975	3096	8408	8631	9975	9975		
IPAFLNVVDIAGLVK	15	Unmodified	_IPAFLNVVDIAGLVK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.974159	1567.93376	1.3935	0.0010939	1.5999	0.0012559	2.9934	0.0023497	784.975426271508	20.022	0.044324	20.022	20.013	20.057	0	279	61	1.13799159301878	0.0399689530119671	1.13799159301878	459.811606231508	0	16.1496698188006						221	6	4	NaN	NaN	NaN	8.8423E-12	1	20608	156.73	150.7	1	172120			9976	3044	8409	8632	9976	9976		
IPAGLCATAIDILTTVVR	18	Unmodified	_IPAGLCATAIDILTTVVR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.692283	1883.05502	-0.12238	-7.6937E-05	-0.40395	-0.00025396	-0.52632	-0.0003309	628.691879906836	20.137	0.026603	20.137	20.128	20.155	0	609	19	0.916577990479294	0.0121708628142703	0.916577990479294	554.705627981554	0	7.36570828734045						32	4	2	NaN	NaN	NaN	0.044926	1	29220	32.759	32.394	1	28575			9977	2594	8410	8633	9977	9977		
IPAHQVLYSTSGENASGK	18	Unmodified	_IPAHQVLYSTSGENASGK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.968322	1857.92209	3.0276	0.0028156	-1.6438	-0.0015287	1.3838	0.0012869	930.467929166958	5.0174	0.079783	5.0174	4.9997	5.0795	0	258	28	1.15196821829984	0.0179650057750098	1.15196821829984	464.82240213945	0	7.24893014072336						165	10	3	NaN	NaN	NaN	1.1721E-06	1	28653	59.997	53.141	1	28176			9978	3136	8411	8634	9978	9978		
IPALDLLIK	9	Unmodified	_IPALDLLIK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.328611	994.642668	-0.53693	-0.00026757	-1.1062	-0.00055123	-1.6431	-0.0008188	498.328164358342	16.227	0.39015	16.227	16.076	16.466	0	702	61	0.853568545818287	0.0407274835895337	0.853568545818287	346.623510987569	0	16.5389217124434						1100	45	4	NaN	NaN	NaN	0.0012078	1	4166	84.368	41.533	1	869840			9979	1465	8412	8635	9979	9979		
IPAMTIAK	8	Unmodified	_IPAMTIAK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.751682	843.48881	-0.74968	-0.00031693	0.25903	0.0001095	-0.49066	-0.00020743	422.751753883722	6.9328	0.30154	6.9328	6.8353	7.1368	0	810	52	0.78005493425781	0.034794520890943	0.78005493425781	317.543708743199	0	14.1641065550918						627	35	2	NaN	NaN	NaN	0.016891	1	1470	58.286	20.678	1	1088800			9980	635	8413	8636	9980	9980		
IPANQLAELWLK	12	Unmodified	_IPANQLAELWLK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.403369	1394.79219	0.81919	0.00057212	0.0017878	1.2486E-06	0.82098	0.00057337	698.403457183501	16.519	0.15073	16.519	16.457	16.608	0	438	49	1.03173026378327	0.0322051603576423	1.03173026378327	417.32884723668	0	13.02679868849						425	18	4	NaN	NaN	NaN	4.6128E-05	1	15298	122.51	116.25	1	146890			9981	3136	8414	8637	9981	9981		
IPAYFVTVSDPAVPPGEDPDGR	22	Unmodified	_IPAYFVTVSDPAVPPGEDPDGR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1150.06569	2298.11683	0.92835	0.0010677	-1.0911	-0.0012549	-0.16277	-0.0001872	1150.56564705653	14.48	0.16846	14.48	14.444	14.613	0	96	67	1.2593374219024	0.0435752758546322	1.2593374219024	507.4241775481	0	17.5577634138485						355	20	3	NaN	NaN	NaN	0.00016974	1	35625	37.774	35.672	1	76020			9982	858	8415	8638	9982	9982		
IPDEFDNDPILVQQLR	16	Unmodified	_IPDEFDNDPILVQQLR_			0	0	0	Q3ZCQ8	Q3ZCQ8	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.494172	1910.97379	1.7595	0.001683	-1.0458	-0.0010003	0.71374	0.00068269	956.994512198804	15.322	0.19518	15.322	15.278	15.473	0	237	85	1.16593139812432	0.0558796490332107	1.16593139812432	470.359777390514	0	22.5429552049155						903	23	4	NaN	NaN	NaN	0.00019601	1	29853	73.891	62.919	1	256470			9983	1937	8416	8639	9983	9983		
IPDEIIDMVK	10	Unmodified	_IPDEIIDMVK_			0	0	0	Q9Y4Z0	Q9Y4Z0	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.815207	1171.61586	1.4503	0.00085107	-1.3521	-0.00079341	0.098262	5.7662E-05	586.814638039727	13.877	0.20393	13.877	13.797	14.001	0	603	61	0.920633820089869	0.0405751847328444	0.920633820089869	373.086475246171	0	16.4430768499917						542	24	5	NaN	NaN	NaN	0.00072527	1	8651	85.716	60.462	1	342160			9984	3419	8417	8640	9984	9984		
IPDEINDR	8	Unmodified	_IPDEINDR_			0	0	0	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.243264	970.471974	0.45322	0.00022038	-0.46343	-0.00022534	-0.010211	-4.9652E-06	486.242544644766	4.7071	0.26602	4.7071	4.645	4.911	0	735	64	0.831145085810763	0.0428501113884328	0.831145085810763	337.632272919017	0	17.4068050812052						561	31	3	NaN	NaN	NaN	0.010353	1	3635	58.286	37.627	1	172820			9985	2747	8418	8641	9985	9985		
IPDHDPAPNVTVLLR	15	Unmodified	_IPDHDPAPNVTVLLR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.973778	1655.8995	-1.4495	-0.00080156	-0.9116	-0.00050409	-2.3611	-0.0013056	552.973249359394	11.651	0.2927	11.651	11.553	11.846	0	753	37	0.81889964927511	0.0244942818992349	0.81889964927511	496.087821546303	0	14.8385885358345						711	34	4	NaN	NaN	NaN	0.0024524	1	23228	54.199	53.236	1	172940			9986	3158	8419	8642	9986	9986		
IPDIVLWPTCHDDVVK	16	Unmodified	_IPDIVLWPTCHDDVVK_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.329233	1905.96587	-0.06819	-4.3391E-05	-0.9468	-0.00060247	-1.015	-0.00064587	636.663211798599	14.923	0.17735	14.923	14.834	15.012	0	645	37	0.892219381832517	0.0243822699655701	0.892219381832517	539.916572347238	0	14.7546577600875						512	21	5	NaN	NaN	NaN	3.4781E-05	1	29723	90.156	79.184	1	178720			9987	49	8420	8643	9987	9987		
IPDPEAVKPDDWDEDAPAK	19	Unmodified	_IPDPEAVKPDDWDEDAPAK_			0	0	1	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.49457	2106.97458	2.7707	0.0029217	-1.3303	-0.0014028	1.4404	0.0015189	1054.49322096268	10.019	0.133	10.019	9.9662	10.099	0	153	91	1.22165005014568	0.0596494159985455	1.22165005014568	492.50715317369	0	24.0476100814742						1056	16	4	NaN	NaN	NaN	0.024906	1	33411	44.16	43.541	1	222750			9988	870	8421	8644	9988	9988		
IPDPEAVKPDDWDEDAPAK	19	Unmodified	_IPDPEAVKPDDWDEDAPAK_			0	0	1	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.332136	2106.97458	1.6505	0.0011609	1.3011	0.00091513	2.9516	0.002076	703.667357633713	10.037	0.28373	10.037	9.9218	10.206	0	627	199	0.90440375274676	0.133565249744975	0.90440375274676	546.912656539505	0	80.7698169512585						4521	33	6	NaN	NaN	NaN	1.17E-19	1	33412	189.07	180.71	1	2751300			9989	870	8421	8644	9989	9989		
IPDQLVILDMK	11	Unmodified	_IPDQLVILDMK_			0	0	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.865231	1283.71591	1.0184	0.00065472	0.044645	2.8701E-05	1.0631	0.00068342	642.865640790841	15.287	0.21278	15.287	15.225	15.437	0	507	73	0.985374541851584	0.0484816592636016	0.985374541851584	398.916587099325	0	19.6271947659688						847	25	5	NaN	NaN	NaN	1.9612E-05	1	11883	119.94	80.925	1	548790			9990	1146	8422	8645	9990	9990		
IPDQLVILDMK	11	Oxidation (M)	_IPDQLVILDM(Oxidation (M))K_	IPDQLVILDM(1)K	IPDQLVILDM(51)K	0	1	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.862689	1299.71082	1.8641	0.0012133	-1.8959	-0.001234	-0.031756	-2.0669E-05	650.861234308589	12.848	0.26605	12.848	12.706	12.972	0	522	37	0.975277694896658	0.0242408171075922	0.975277694896658	394.777284736893	0	9.81230680001647						351	31	2	NaN	NaN	NaN	0.011162	1	12350	51.454	43.452	1	120980			9991	1146	8422	8646	9991	9991	414	
IPEFELLWK	9	Unmodified	_IPEFELLWK_			0	0	0	Q68E01	Q68E01	Q68E01	INTS3	Integrator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.828975	1173.6434	-0.59469	-0.00034958	-1.7233	-0.001013	-2.318	-0.0013626	587.828601187848	17.202	0.15962	17.202	17.131	17.291	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	366.501880951222	0	8.22593097682295						304	19	3	NaN	NaN	NaN	0.0081985	1	8708	62.969	45.573	1	75515			9992	2024	8423	8647	9992	9992		
IPEFIAFR	8	Unmodified	_IPEFIAFR_			0	0	0	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.781828	991.549102	-0.936	-0.00046499	-0.91154	-0.00045284	-1.8475	-0.00091782	496.781191453353	14.045	0.15961	14.045	14.001	14.161	0	720	31	0.841341816837976	0.0203863795531677	0.841341816837976	341.672929498282	0	8.27900608812371						325	19	4	NaN	NaN	NaN	0.0025753	1	4099	85.813	49.243	1	122540			9993	1785	8424	8648	9993	9993		
IPEINSSDMSAHVTSPSGR	19	Unmodified	_IPEINSSDMSAHVTSPSGR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.317944	1983.932	1.3253	0.00087777	-0.03047	-2.0181E-05	1.2948	0.00085759	662.652403099533	8.3785	0.20398	8.3785	8.2987	8.5027	0	585	49	0.932794566565362	0.0324196809968852	0.932794566565362	564.310000653053	0	19.612839590058						771	24	5	NaN	NaN	NaN	2.6882E-07	1	31348	81.578	70.095	1	285760			9994	326	8425	8649	9994	9994		
IPEINSSDMSAHVTSPSGR	19	Unmodified	_IPEINSSDMSAHVTSPSGR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.973278	1983.932	2.1521	0.0021369	-0.72715	-0.00072204	1.4249	0.0014149	993.474821119411	8.3697	0.062121	8.3697	8.3342	8.3963	0	207	28	1.18585551256002	0.0179230835476791	1.18585551256002	478.270715886047	0	7.22860914204335						120	8	3	NaN	NaN	NaN	0.038196	1	31349	31.767	28.128	1	19406			9995	326	8425	8649	9995	9995		
IPEISIQDMTAQVTSPSGK	19	Unmodified	_IPEISIQDMTAQVTSPSGK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.5117	2001.00886	1.7351	0.0017377	0.53992	0.00054074	2.275	0.0022785	1002.01419812523	15.189	0.21282	15.189	15.118	15.331	0	210	79	1.18386433251387	0.051781389209637	1.18386433251387	477.439331729578	0	20.8828589402482						968	25	4	NaN	NaN	NaN	2.5165E-10	1	31655	84.105	81.715	1	311600			9996	792	8426	8650	9996	9996		
IPEIWEGHNIADYIDPAIMK	20	Unmodified	_IPEIWEGHNIADYIDPAIMK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.724311	2324.1511	0.77012	0.0005974	-1.4938	-0.0011588	-0.72369	-0.00056139	776.057549312643	17.858	0.14184	17.858	17.779	17.92	0	558	133	0.951016745717027	0.0889446950969059	0.951016745717027	574.748847291346	0	53.7539020315397						1205	17	4	NaN	NaN	NaN	1.0179E-07	1	35852	92.319	88.878	1	288520			9997	2808	8427	8651	9997	9997		
IPELLASGMVDNMTK	15	Unmodified	_IPELLASGMVDNMTK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.912584	1617.81061	1.9306	0.0015637	0.90489	0.00073288	2.8355	0.0022965	809.913415911516	14.861	0.26612	14.861	14.755	15.021	0	342	76	1.09598084995137	0.0501162317306705	1.09598084995137	442.717405873537	0	20.2442662250385						995	31	3	NaN	NaN	NaN	2.4581E-08	1	22131	112.95	70.89	1	481970			9998	916	8428	8652	9998	9998		
IPENIYR	7	Unmodified	_IPENIYR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.747985	903.481417	0.44514	0.00020153	0.36101	0.00016345	0.80615	0.00036498	452.747660599061	5.576	0.34581	5.576	5.4697	5.8155	0	735	43	0.831145085810763	0.0285607760310633	0.831145085810763	337.981783282735	0	11.6141239113521						517	40	3	NaN	NaN	NaN	0.0094774	1	2391	64.547	35.237	1	240590			9999	1055	8429	8653	9999	9999		
IPEQSVLLLHACAHNPTGVDPRPEQWK	27	Unmodified	_IPEQSVLLLHACAHNPTGVDPRPEQWK_			0	0	1	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	773.89882	3091.56617	1.9272	0.0014915	-2.0825	-0.0016117	-0.15533	-0.00012021	774.397383221966	11.367	0.12418	11.367	11.305	11.429	0	426	31	1.03977710643793	0.0201115556839417	1.03977710643793	836.6173126537	0	16.1820024362972						286	15	5	NaN	NaN	NaN	0.025965	1	38349	47.965	47.861	1	56987			10000	482	8430	8654	10000	10000		
IPETLEEDQQFMLK	14	Unmodified	_IPETLEEDQQFMLK_			0	0	0	Q9UGP8	Q9UGP8	Q9UGP8	SEC63	Translocation protein SEC63 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.926745	1719.83894	2.1671	0.0018657	1.9841	0.0017081	4.1511	0.0035738	861.429717653876	13.194	0.18622	13.194	13.123	13.309	0	264	43	1.14797626962532	0.0279513333515433	1.14797626962532	463.487138425235	0	11.2851492256934						532	22	4	NaN	NaN	NaN	2.9006E-06	1	25056	84.309	74.059	1	115950			10001	3205	8431	8655	10001	10001		
IPFADALDLFR	11	Unmodified	_IPFADALDLFR_			0	0	0	P49643	P49643	P49643	PRIM2	DNA primase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.348063	1276.68157	0.45262	0.00028938	-0.17859	-0.00011418	0.27403	0.0001752	639.34827010692	19.49	0.13292	19.49	19.401	19.534	0	543	37	0.961130371139249	0.0242609491796308	0.961130371139249	389.12445887173	0	9.82231859976332						271	16	3	NaN	NaN	NaN	0.0026416	1	11681	39.039	28.252	1	68579			10002	1141	8432	8656	10002	10002		
IPGEETDTIQHMR	13	Unmodified	_IPGEETDTIQHMR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.58044	1525.71949	-1.0156	-0.00051751	-0.10437	-5.3186E-05	-1.1199	-0.0005707	509.580281101287	5.9219	0.18627	5.9219	5.8598	6.0461	0	804	31	0.78414869089473	0.0204659356679318	0.78414869089473	475.371508731045	0	12.406987130153						520	22	4	NaN	NaN	NaN	0.0014161	1	19286	79.311	66.136	1	180100			10003	1163	8433	8657	10003	10003		
IPGEETDTIQHMR	13	Unmodified	_IPGEETDTIQHMR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.867022	1525.71949	2.5149	0.0019211	-1.6842	-0.0012865	0.8307	0.00063455	763.866336288176	5.9041	0.26606	5.9041	5.8066	6.0727	0	420	40	1.04379886199097	0.0261396123563653	1.04379886199097	421.85467812782	0	10.564408679223						668	31	4	NaN	NaN	NaN	0.0069619	1	19287	48.701	43.872	1	154830			10004	1163	8433	8657	10004	10004		
IPGGATLVFEVELLK	15	Unmodified	_IPGGATLVFEVELLK_			0	0	0	P26885	P26885	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.463624	1584.9127	0.60255	0.0004781	0.050327	3.9933E-05	0.65287	0.00051803	793.463433976192	18.825	0.079803	18.825	18.798	18.878	0	372	28	1.07593298845566	0.0180567582356488	1.07593298845566	434.695727465353	0	7.29524583884881						146	10	3	NaN	NaN	NaN	0.015097	1	21112	47.57	40.43	1	27345			10005	860	8434	8658	10005	10005		
IPGGIIEDSCVLR	13	Unmodified	_IPGGIIEDSCVLR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.879401	1427.74425	1.4953	0.001069	-0.0068864	-4.9229E-06	1.4884	0.0010641	714.879934191649	12.041	0.2483	12.041	11.935	12.183	0	465	70	1.01360860968299	0.0463237128819054	1.01360860968299	409.905841864814	0	18.7334246628982						1490	29	5	NaN	NaN	NaN	1.8301E-07	1	16321	120.65	95.04	1	1626200			10006	1129	8435	8659	10006	10006		
IPGIIIAASAVR	12	Unmodified	_IPGIIIAASAVR_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.874248	1179.73394	0.75665	0.00044708	-1.6457	-0.0009724	-0.88904	-0.00052531	590.873159419524	13.363	0.17738	13.363	13.256	13.434	0	576	40	0.938871150116794	0.0263209282177764	0.938871150116794	380.44667962828	0	10.6656911802452						343	21	3	NaN	NaN	NaN	0.022592	1	8881	32.549	21.189	1	84700			10007	951	8436	8660	10007	10007		
IPGLLSPHPLLQLSYTATDR	20	Unmodified	_IPGLLSPHPLLQLSYTATDR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.407311	2191.2001	0.12575	9.1971E-05	-0.61687	-0.00045119	-0.49113	-0.00035921	731.741270195366	15.89	0.22168	15.89	15.837	16.058	0	588	55	0.93076847747433	0.0364873075787652	0.93076847747433	562.714426851252	0	22.0591208967929						1145	26	6	NaN	NaN	NaN	2.8941E-17	1	34580	149.14	146.43	1	734550			10008	1127	8437	8661	10008	10008		
IPGLLSPHPLLQLSYTATDR	20	Unmodified	_IPGLLSPHPLLQLSYTATDR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.60733	2191.2001	-0.31544	-0.00034591	0.46638	0.00051144	0.15094	0.00016553	1097.10941007179	15.89	0.088703	15.89	15.863	15.952	1.7764E-15	63	55	1.28111162701928	0.0356280865496466	1.28111162701928	516.349012876509	0	14.3598160633288						398	11	4	NaN	NaN	NaN	0.034939	1	34581	20.29	19.925	1	82386			10009	1127	8437	8661	10009	10009		
IPGLNSPIPESCSFGYHAGGWGKPPVDETGK	31	Unmodified	_IPGLNSPIPESCSFGYHAGGWGKPPVDETGK_			0	0	1	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	814.394838	3253.55025	1.2615	0.0010274	0.83038	0.00067626	2.0919	0.0017036	814.646556045568	13.283	0.1064	13.283	13.221	13.327	0	459	49	1.01763759082241	0.0322407656624188	1.01763759082241	818.620985199517	0	25.9355271347893						413	13	5	NaN	NaN	NaN	1.7453E-10	1	38509	65.01	64.906	1	68335			10010	1667	8438	8662	10010	10010		
IPGMLIIDTPGHESFSNLR	19	Unmodified	_IPGMLIIDTPGHESFSNLR_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.04351	2096.07246	1.2394	0.0013001	-4.2016	-0.0044076	-2.9622	-0.0031075	1050.03813326085	14.453	0.11528	14.453	14.409	14.524	0	66	49	1.27913350869533	0.0316650717164555	1.27913350869533	515.699131921925	0	12.7661810791568						200	14	3	NaN	NaN	NaN	0.024166	1	33258	11.679	10.091	1	36496			10011	288	8439	8663	10011	10011		
IPGMLIIDTPGHESFSNLR	19	Unmodified	_IPGMLIIDTPGHESFSNLR_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.698096	2096.07246	1.3554	0.0009484	-1.2481	-0.00087328	0.10735	7.5115E-05	700.031631489431	14.462	0.16848	14.462	14.409	14.577	0	516	49	0.979317271586824	0.0323166232596742	0.979317271586824	592.23465376772	0	19.5432315373376						741	20	6	NaN	NaN	NaN	1.2773E-15	1	33260	172.09	151.8	1	402870			10012	288	8439	8663	10012	10012		
IPGSPPESMGR	11	Unmodified	_IPGSPPESMGR_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.279323	1126.54409	1.839	0.0010377	-0.56558	-0.00031914	1.2734	0.00071858	564.27926812354	5.1681	0.37243	5.1681	4.9997	5.3721	0	642	55	0.894250814548268	0.0365683394174512	0.894250814548268	362.563433535401	0	14.8262014215514						1194	43	4	NaN	NaN	NaN	0.0060222	1	7431	50.834	22.738	1	607510			10013	1161	8440	8664	10013	10013		
IPIFSAAGLPHNEIAAQICR	20	Unmodified	_IPIFSAAGLPHNEIAAQICR_			0	0	0	P21281;P15313	P21281	P21281	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.721124	2177.14154	0.76674	0.0005572	-2.0454	-0.0014864	-1.2786	-0.00092922	727.05429793683	14.462	0.10642	14.462	14.4	14.506	0	594	55	0.926715457081489	0.0364923641742785	0.926715457081489	560.286869557493	0	22.0630748410628						382	13	3	NaN	NaN	NaN	6.8342E-05	1	34410	57.279	51.949	1	125240			10014	789	8441	8665	10014	10014		
IPIGFIPLGETSSLSHTLFAESGNK	25	Unmodified	_IPIGFIPLGETSSLSHTLFAESGNK_			0	0	0	Q53H12	Q53H12	Q53H12	AGK	Acylglycerol kinase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	872.462033	2614.36427	1.0476	0.00091398	0.30653	0.00026744	1.3541	0.0011814	872.796472941232	18.603	0.070929	18.603	18.568	18.639	0	432	37	1.035754240522	0.024143864458734	1.035754240522	625.547208277991	0	14.5817670044891						250	9	4	NaN	NaN	NaN	0.022949	1	37293	28.955	27.529	1	78795			10015	1950	8442	8666	10015	10015		
IPILSTFLTAR	11	Unmodified	_IPILSTFLTAR_			0	0	0	Q9UBB6	Q9UBB6	Q9UBB6	NCDN	Neurochondrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.374081	1230.73361	-0.031687	-1.9531E-05	-0.70863	-0.00043678	-0.74032	-0.00045631	616.373563252016	18.027	0.2128	18.027	17.876	18.089	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	382.724534147439	0	6.55899414869896						296	25	3	NaN	NaN	NaN	0.0011213	1	10345	44.82	41.213	1	58847			10016	3168	8443	8667	10016	10016		
IPILYGEVEK	10	Unmodified	_IPILYGEVEK_			0	0	0	Q9NZL9	Q9NZL9	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.831714	1159.64888	1.1042	0.00064133	-1.3859	-0.00080495	-0.28171	-0.00016362	580.831168421463	10.782	0.18623	10.782	10.693	10.879	0	594	46	0.926715457081489	0.0303955552959029	0.926715457081489	375.596149156789	0	12.3192652430524						316	22	2	NaN	NaN	NaN	0.0044552	1	8345	49.16	41.513	1	199280			10017	3135	8444	8668	10017	10017		
IPISLVLR	8	Unmodified	_IPISLVLR_			0	0	0	O95747	O95747	O95747	OXSR1	Serine/threonine-protein kinase OSR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.807845	909.601138	-1.2862	-0.00058627	-1.8719	-0.00085324	-3.1582	-0.0014395	455.806983919776	13.292	0.16852	13.292	13.23	13.398	0	756	34	0.816857749704129	0.0224608985391257	0.816857749704129	332.138447303616	0	9.13271370508681						359	20	4	NaN	NaN	NaN	0.0028351	1	2505	92.677	83.283	1	214130			10018	449	8445	8669	10018	10018		
IPLDVNDMK	9	Unmodified	_IPLDVNDMK_			0	0	0	Q9Y697	Q9Y697	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.773342	1043.53213	0.53219	0.00027822	0.49582	0.0002592	1.028	0.00053742	522.773471261934	8.9996	0.12415	8.9996	8.9553	9.0794	0	654	28	0.886123392477847	0.018290507163651	0.886123392477847	359.613540780439	0	7.42279698248115						221	15	2	NaN	NaN	NaN	0.05006	1	5315	44.82	29.239	1	69707			10019	3455	8446	8670	10019	10019		
IPLFNTDVDNLEGK	14	Unmodified	_IPLFNTDVDNLEGK_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.90667	1573.79879	2.1486	0.0016929	0.28295	0.00022294	2.4315	0.0019158	787.907285137819	14.249	0.26602	14.249	14.178	14.444	0	369	85	1.07793901817685	0.0561185896384611	1.07793901817685	435.532836908994	0	22.6742776135046						791	31	5	NaN	NaN	NaN	1.107E-07	1	20787	110.58	93.112	1	251780			10020	2601	8447	8671	10020	10020		
IPLLLTSLSFK	11	Unmodified	_IPLLLTSLSFK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.386657	1230.75876	0.60109	0.0003705	-0.88798	-0.00054734	-0.28689	-0.00017684	616.386063842839	18.337	0.11526	18.337	18.275	18.39	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.827916515543	0	7.36203628509577						207	14	2	NaN	NaN	NaN	2.0133E-05	1	10346	109.88	108.08	1	87962			10021	1766	8448	8672	10021	10021		
IPLLSDLTHQISK	13	Unmodified	_IPLLSDLTHQISK_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.952203	1463.83478	-1.0782	-0.0005272	-1.3129	-0.00064193	-2.3911	-0.0011691	488.951588002008	14.356	0.31918	14.356	14.152	14.471	-1.7764E-15	783	55	0.798467866007927	0.0367976941890957	0.798467866007927	484.23587891254	0	22.3161939837348						1519	37	5	NaN	NaN	NaN	1.5703E-05	1	17399	99.174	81.704	1	820180			10022	1637	8449	8673	10022	10022		
IPLLSDLTHQISK	13	Unmodified	_IPLLSDLTHQISK_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.924666	1463.83478	1.6195	0.0011869	0.76403	0.00055997	2.3835	0.0017469	732.925231004764	14.347	0.34581	14.347	14.116	14.462	0	387	46	1.06589869032374	0.0301195105360905	1.06589869032374	430.950093563643	0	12.1775230624189						897	40	3	NaN	NaN	NaN	6.323E-08	1	17400	101.45	85.566	1	341080			10023	1637	8449	8673	10023	10023		
IPLNDLFR	8	Unmodified	_IPLNDLFR_			0	0	0	P13473	P13473	P13473	LAMP2	Lysosome-associated membrane glycoprotein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.284734	986.554916	-0.30721	-0.00015185	-1.0251	-0.00050668	-1.3323	-0.00065853	494.284289502135	13.708	0.36352	13.708	13.575	13.939	0	711	46	0.847456455381371	0.030568952954407	0.847456455381371	344.179951578794	0	12.4150576479206						1004	42	4	NaN	NaN	NaN	0.0025753	1	3991	75.243	41.431	1	828520			10024	677	8450	8674	10024	10024		
IPLPVSNILWEHCIR	15	Unmodified	_IPLPVSNILWEHCIR_			0	0	0	Q96JG6	Q96JG6	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.338063	1845.99236	-0.8158	-0.00050281	-1.5717	-0.00096872	-2.3875	-0.0014715	616.671438505013	15.739	0.079783	15.739	15.695	15.775	0	678	22	0.869855008346864	0.0142437305757047	0.869855008346864	526.506470374907	0	8.62145557411668						124	10	4	NaN	NaN	NaN	6.3137E-05	1	28391	52.863	39.689	1	27003			10025	2567	8451	8675	10025	10025		
IPLVPENLLK	10	Unmodified	_IPLVPENLLK_			0	0	0	Q6DKI1	Q6DKI1	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.357899	1134.70125	0.30966	0.000176	-0.23523	-0.00013369	0.074438	4.2307E-05	568.357653135954	14.897	0.15074	14.897	14.817	14.967	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	380.621137610673	0	9.85317884898097						338	18	3	NaN	NaN	NaN	0.028548	1	7673	28.096	25.498	1	89992			10026	2030	8452	8676	10026	10026		
IPMPDFDLHLK	11	Unmodified	_IPMPDFDLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.568924	1324.68494	-1.8092	-0.00080069	-0.9928	-0.00043938	-2.802	-0.0012401	442.568472451422	14.311	0.1862	14.311	14.223	14.409	0	846	73	0.755468431110051	0.0491661822907883	0.755468431110051	458.608291722152	0	29.846407794628						880	22	4	NaN	NaN	NaN	0.033621	1	13137	40.386	33.236	1	383340			10027	1584	8453	8677	10027	10027		
IPNFLHLTPVAIK	13	Unmodified	_IPNFLHLTPVAIK_			0	0	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.297533	1461.87077	-0.34092	-0.00016647	-0.96597	-0.00047168	-1.3069	-0.00063815	488.297010217208	15.038	0.25714	15.038	14.861	15.118	0	681	40	0.867820189810857	0.026448974146953	0.867820189810857	526.301643319672	0	16.0403488200647						453	30	4	NaN	NaN	NaN	0.0042587	1	17336	67.548	59.547	1	123730			10028	1472	8454	8678	10028	10028		
IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR	32	Unmodified	_IPNFWVTTFVNHPQVSALLGEEDEEALHYLTR_			0	0	0	Q01105	Q01105	Q01105	SET	Protein SET	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	932.220417	3724.85256	1.0087	0.00094035	1.4547	0.0013561	2.4634	0.0022965	932.472892888326	19.942	0.053219	19.942	19.915	19.969	0	246	85	1.1599488233373	0.0558796490332107	1.1599488233373	932.597888552709	0	44.9271913147888						335	7	6	NaN	NaN	NaN	0.057462	1	38718	1.8016	1.7938	1	80460			10029	1513	8455	8679	10029	10029		
IPNIYAIGDVVAGPMLAHK	19	Unmodified	_IPNIYAIGDVVAGPMLAHK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.364278	1978.071	0.87203	0.00057586	-1.1302	-0.00074633	-0.25816	-0.00017048	660.698092135713	17.69	0.39902	17.69	17.477	17.876	0	534	46	0.967195187796614	0.0303157001501234	0.967195187796614	585.133281410467	0	18.3403777550925						1392	46	5	NaN	NaN	NaN	4.1978E-05	1	31258	100.69	94.79	1	842140			10030	607	8456	8680	10030	10030		
IPNIYAIGDVVAGPMLAHK	19	Unmodified	_IPNIYAIGDVVAGPMLAHK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.042778	1978.071	0.36891	0.00036523	0.030149	2.9849E-05	0.39906	0.00039508	990.544400375173	17.69	0.16848	17.69	17.61	17.779	0	66	43	1.27913350869533	0.0277069358040583	1.27913350869533	515.901543694715	0	11.1747920410149						421	20	3	NaN	NaN	NaN	0.0001041	1	31259	62.494	60.104	1	70110			10031	607	8456	8680	10031	10031		
IPNIYAIGDVVAGPMLAHK	19	Oxidation (M)	_IPNIYAIGDVVAGPM(Oxidation (M))LAHK_	IPNIYAIGDVVAGPM(1)LAHK	IPNIYAIGDVVAGPM(61)LAHK	0	1	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.695916	1994.06592	0.78887	0.00052515	-0.53957	-0.00035919	0.2493	0.00016596	666.029972702308	15.242	0.23941	15.242	15.083	15.322	0	531	40	0.969216233931596	0.0262663358758335	0.969216233931596	586.323229558484	0	15.8897079312371						648	28	4	NaN	NaN	NaN	0.012494	1	31531	61.042	48.666	1	175210			10032	607	8456	8681	10032	10032	165	
IPNPDFFEDLEPFR	14	Unmodified	_IPNPDFFEDLEPFR_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.419945	1734.82534	2.083	0.0018089	-0.92772	-0.00080565	1.1553	0.0010033	868.419067208531	18.993	0.27485	18.993	18.914	19.188	0	339	67	1.09798411722691	0.044081013383825	1.09798411722691	443.272559278172	0	17.7961623594098						1835	32	5	NaN	NaN	NaN	1.3793E-07	1	25463	95.656	85.913	1	1001900			10033	870	8457	8682	10033	10033		
IPNQFQSDPPAPSDK	15	Unmodified	_IPNQFQSDPPAPSDK_			0	0	0	Q9NRV9	Q9NRV9	Q9NRV9	HEBP1	Heme-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.899377	1639.7842	2.3937	0.001965	-5.9036	-0.0048463	-3.5099	-0.0028813	820.893095104198	6.4185	0.27486	6.4185	6.321	6.5959	0	387	67	1.06589869032374	0.0441966271426135	1.06589869032374	430.516868143489	0	17.8510337545912						1055	32	4	NaN	NaN	NaN	0.0011303	1	22747	90.156	84.128	1	294520			10034	3026	8458	8683	10034	10034		
IPNTSLFVPLTVK	13	Unmodified	_IPNTSLFVPLTVK_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.926677	1427.8388	1.7361	0.0012412	-1.0323	-0.00073805	0.70373	0.00050311	714.925966568466	15.473	0.17749	15.473	15.411	15.588	0	438	37	1.03173026378327	0.0241471979634897	1.03173026378327	417.234022850775	0	9.76518078469132						474	21	4	NaN	NaN	NaN	0.0023617	1	16342	66.953	48.446	1	123490			10035	2223	8459	8684	10035	10035		
IPPPVIMVQNVSFK	14	Unmodified	_IPPPVIMVQNVSFK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.633817	1567.87962	-0.45203	-0.0002367	-2.411	-0.0012625	-2.8631	-0.0014992	523.632578436684	15.42	0.10653	15.42	15.375	15.482	-1.7764E-15	693	22	0.85967808974117	0.0142536233772099	0.85967808974117	521.033561217494	0	8.63883381128937						111	13	2	NaN	NaN	NaN	0.065893	1	20602	25.613	24.561	1	34724			10036	3202	8460	8685	10036	10036		
IPPPVIMVQNVSFK	14	Unmodified	_IPPPVIMVQNVSFK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.947087	1567.87962	2.0234	0.0015883	1.1038	0.00086645	3.1272	0.0024547	784.947947545003	15.411	0.21294	15.411	15.322	15.535	0	312	55	1.11600111266355	0.0360265591929509	1.11600111266355	450.926372987684	0	14.5567289169908						810	25	5	NaN	NaN	NaN	2.6928E-06	1	20603	99.276	80.465	1	411730			10037	3202	8460	8685	10037	10037		
IPQAIAQLSK	10	Unmodified	_IPQAIAQLSK_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.824224	1067.63389	0.51187	0.00027376	-2.5188	-0.0013471	-2.0069	-0.0010733	534.822919587947	8.7334	0.14217	8.7334	8.6268	8.769	0	651	31	0.888155670855968	0.0203185572291886	0.888155670855968	360.332332742323	0	8.24341201052721						214	17	3	NaN	NaN	NaN	3.2865E-05	1	5906	81.163	65.582	1	73508			10038	1907	8461	8686	10038	10038		
IPQLAPPASDSTVTK	15	Unmodified	_IPQLAPPASDSTVTK_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.917038	1523.81952	2.073	0.0015815	-0.9782	-0.00074629	1.0948	0.00083523	762.916402955194	8.6534	0.15084	8.6534	8.5736	8.7245	0	420	28	1.04379886199097	0.0180941555297223	1.04379886199097	421.859404743908	0	7.31289327768815						260	16	4	NaN	NaN	NaN	0.016085	1	19248	49.097	38.846	1	74733			10039	1883	8462	8687	10039	10039		
IPQSHIQQICETILTSGENLAR	22	Unmodified	_IPQSHIQQICETILTSGENLAR_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.76735	2507.28022	1.1014	0.00092161	-0.64974	-0.00054368	0.45166	0.00037793	837.101351498443	15.828	0.10642	15.828	15.783	15.89	0	489	55	0.997481546940468	0.0363109867512514	0.997481546940468	602.568342467168	0	21.9350936036461						537	13	5	NaN	NaN	NaN	1.789E-06	1	36864	86.798	82.15	1	127720			10040	233	8463	8688	10040	10040		
IPQSHIQQICETILTSGENLAR	22	Unmodified	_IPQSHIQQICETILTSGENLAR_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.76735	2507.28022	1.8231	0.0015255	-0.78696	-0.0006585	1.0361	0.00086697	837.433808918694	15.837	0.15962	15.837	15.757	15.916	0	375	70	1.07392668217569	0.0461259947447743	1.07392668217569	648.748062843566	0	27.8642389970058						610	19	4	NaN	NaN	NaN	3.121E-06	1	36865	62.304	53.173	1	131280			10041	233	8463	8688	10041	10041		
IPSAVGYQPTLATDMGTMQER	21	Unmodified	_IPSAVGYQPTLATDMGTMQER_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.54575	2265.07695	2.0269	0.0022976	-0.69254	-0.00078502	1.3344	0.0015126	1134.04709020427	12.972	0.17734	12.972	12.919	13.096	-1.7764E-15	99	115	1.25735632164274	0.0753696736383263	1.25735632164274	506.670351124327	0	30.3713262097131						2162	21	7	NaN	NaN	NaN	2.3582E-11	1	35325	137.68	128.55	1	1383600			10042	541	8464	8689	10042	10042		
IPSAVGYQPTLATDMGTMQER	21	Unmodified	_IPSAVGYQPTLATDMGTMQER_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.032927	2265.07695	1.683	0.0012724	-0.31052	-0.00023476	1.3725	0.0010377	756.367078214061	12.981	0.23056	12.981	12.857	13.088	0	441	61	1.02971785871157	0.0402731387036235	1.02971785871157	622.408403393587	0	24.3429204884676						659	27	4	NaN	NaN	NaN	0.00058355	1	35326	87.251	62.066	1	253740			10043	541	8464	8689	10043	10043		
IPSAVGYQPTLATDMGTMQER	21	Oxidation (M)	_IPSAVGYQPTLATDM(Oxidation (M))GTMQER_	IPSAVGYQPTLATDM(0.952)GTM(0.048)QER	IPSAVGYQPTLATDM(13)GTM(-13)QER	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.364566	2281.07187	1.5701	0.0011954	0.39141	0.00029801	1.9615	0.0014934	761.365433425697	10.676	0.12412	10.676	10.605	10.729	0	456	40	1.01965166402748	0.0261793407485973	1.01965166402748	616.29760525144	0	15.8233106261936						339	15	4	NaN	NaN	NaN	0.00080815	1	35468	54.261	53.318	2	74308			10044	541	8464	8690	10044	10044	111	
IPTEAPQLELK	11	Unmodified	_IPTEAPQLELK_			0	0	0	Q5VW32	Q5VW32	Q5VW32	BROX	BRO1 domain-containing protein BROX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.853178	1237.6918	1.5146	0.00093886	-0.81901	-0.00050767	0.69564	0.00043119	619.852755350145	9.9396	0.2216	9.9396	9.8776	10.099	0	528	40	0.971237000454584	0.0262663358758335	0.971237000454584	393.348784389326	0	10.6378065109598						412	26	4	NaN	NaN	NaN	0.00049289	1	10559	72.922	47.668	1	150010			10045	2011	8465	8691	10045	10045		
IPTHLFTFIQFK	12	Unmodified	_IPTHLFTFIQFK_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.950134	1490.82857	-2.2638	-0.0011272	0.081317	4.0492E-05	-2.1825	-0.0010868	497.950177251663	16.032	0.11525	16.032	15.987	16.103	0	780	46	0.800512323802183	0.0306711433873714	0.800512323802183	485.393542810752	0	18.5975587235703						355	14	4	NaN	NaN	NaN	0.0062419	1	18269	28.647	25.975	1	113360			10046	621	8466	8692	10046	10046		
IPTISTQLK	9	Unmodified	_IPTISTQLK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.8055	999.596446	0.27013	0.00013528	-0.33245	-0.00016649	-0.062318	-3.1209E-05	500.805388999024	8.4318	0.21287	8.4318	8.3342	8.547	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	350.734234362492	0	9.09263136662588						515	25	4	NaN	NaN	NaN	0.037119	1	4287	36.211	16.723	1	230170			10047	753	8467	8693	10047	10047		
IPTPLNTSGVQVICMK	16	Unmodified	_IPTPLNTSGVQVICMK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.468057	1756.92156	2.5978	0.0022847	2.6061	0.002292	5.2039	0.0045766	879.471000799412	13.797	0.15959	13.797	13.717	13.877	0	276	43	1.13998907770044	0.0279667154484231	1.13998907770044	460.184688048628	0	11.2894539747154						498	19	5	NaN	NaN	NaN	0.0045481	1	26076	39.166	35.183	1	175440			10048	2499	8468	8694	10048	10048		
IPVDTYNNILTVLK	14	Unmodified	_IPVDTYNNILTVLK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.958706	1601.90286	1.2051	0.00096644	1.7451	0.0013995	2.9503	0.002366	801.960177581024	16.892	0.21286	16.892	16.83	17.043	0	321	64	1.10999792833052	0.0420570468363235	1.10999792833052	448.417348099129	0	16.9902203687802						947	25	5	NaN	NaN	NaN	6.4189E-24	1	21661	195.09	182.51	1	646700			10049	2605	8469	8695	10049	10049		
IPVENILGEVGDGFK	15	Unmodified	_IPVENILGEVGDGFK_			0	0	0	Q9H845	Q9H845	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.924863	1585.83517	1.2219	0.00097007	-0.82447	-0.00065457	0.39739	0.0003155	793.923355485243	17.184	0.2394	17.184	17.034	17.273	0	357	52	1.08596037261705	0.0340884182480441	1.08596037261705	438.744758448043	0	13.7722473188145						631	28	3	NaN	NaN	NaN	0.0016685	1	21145	62.398	54.84	1	197470			10050	2922	8470	8696	10050	10050		
IPVGPETLGR	10	Unmodified	_IPVGPETLGR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.800749	1037.58694	1.2829	0.00066684	-0.043632	-2.268E-05	1.2392	0.00064416	519.80070757487	7.9172	0.37259	7.9172	7.7664	8.139	0	681	97	0.867820189810857	0.0651007152778963	0.867820189810857	352.211870345973	0	26.421653884183						1796	43	5	NaN	NaN	NaN	5.5709E-10	1	5184	141.93	109.8	1	2118400			10051	541	8471	8697	10051	10051		
IPVHPNDHVNK	11	Unmodified	_IPVHPNDHVNK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.894799	1268.66257	0.47765	0.00020248	0.0034175	1.4487E-06	0.48107	0.00020392	423.894840110019	2.4015	0.23055	2.4015	2.3395	2.57	0	855	58	0.749315378969369	0.0389530565625935	0.749315378969369	455.080052356017	0	23.6572737160604						469	27	4	NaN	NaN	NaN	0.010428	1	11475	49.16	17.208	1	117670			10052	571	8472	8698	10052	10052		
IPVIIER	7	Unmodified	_IPVIIER_			0	0	0	A6NCE7;Q9GZQ8;Q9H492	A6NCE7	A6NCE7	MAP1LC3B2;MAP1LC3B;MAP1LC3A	Microtubule-associated proteins 1A/1B light chain 3 beta 2;Microtubule-associated proteins 1A/1B light chain 3B;Microtubule-associated proteins 1A/1B light chain 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.271096	838.527639	-1.9393	-0.00081501	0.46036	0.00019348	-1.4789	-0.00062154	420.271354547343	8.3342	0.079862	8.3342	8.2898	8.3697	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	324.237530629313	0	6.66006171267333						111	10	2	NaN	NaN	NaN	0.018744	1	1421	56.091	46.012	1	26464			10053	11	8473	8699	10053	10053		
IPVSGPFLVK	10	Unmodified	_IPVSGPFLVK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.826235	1055.63792	-0.54732	-0.00028944	0.12027	6.36E-05	-0.42706	-0.00022584	528.826527566428	11.713	0.20396	11.713	11.66	11.864	0	687	55	0.863749705078866	0.0366343767135493	0.863749705078866	350.481326715864	0	14.8650296242952						513	24	3	NaN	NaN	NaN	0.01841	1	5620	54.436	38.855	1	140560			10054	78	8474	8700	10054	10054		
IPVTDEEQTNVPYIYAIGDILEDK	24	Unmodified	_IPVTDEEQTNVPYIYAIGDILEDK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	912.460246	2734.35891	0.90146	0.00082255	-1.7462	-0.0015934	-0.84475	-0.0007708	912.793030767322	19.915	0.13303	19.915	19.862	19.995	0	459	91	1.01763759082241	0.0604514820612093	1.01763759082241	614.462938823432	0	36.5013985907731						763	16	6	NaN	NaN	NaN	9.6076E-10	1	37710	116.28	110.18	1	236180			10055	1914	8475	8701	10055	10055		
IPWFQYPIIYDIR	13	Unmodified	_IPWFQYPIIYDIR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.463958	1722.91336	1.9319	0.0016662	-1.7791	-0.0015344	0.15282	0.0001318	862.964248167747	19.676	0.11528	19.676	19.632	19.747	0	303	61	1.12200181823275	0.0400184925300473	1.12200181823275	452.993691795926	0	16.1569476775423						489	14	4	NaN	NaN	NaN	2.3245E-07	1	25136	90.689	79.717	1	171490			10056	2660	8476	8702	10056	10056		
IPWFQYPIIYDIR	13	Unmodified	_IPWFQYPIIYDIR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.311731	1722.91336	-1.549	-0.00089118	2.2186	0.0012764	0.66953	0.00038519	575.314397414354	19.667	0.053194	19.667	19.649	19.703	0	711	16	0.847456455381371	0.0101896485259549	0.847456455381371	513.221930199807	0	6.17087881193237						74	7	3	NaN	NaN	NaN	0.014175	1	25137	56.202	51.108	1	13196			10057	2660	8476	8702	10057	10057		
IPWTAASSQLK	11	Unmodified	_IPWTAASSQLK_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.332413	1200.65027	0.90062	0.00054157	-0.084949	-5.1083E-05	0.81567	0.00049049	601.332458360872	9.0972	0.16849	9.0972	9.0528	9.2213	0	564	37	0.946969335010767	0.0242911943445451	0.946969335010767	383.650920056185	0	9.84122580848134						306	20	3	NaN	NaN	NaN	0.007465	1	9489	61.48	47.485	1	95250			10058	2831	8477	8703	10058	10058		
IPYLPITNFNQNWQDGK	17	Unmodified	_IPYLPITNFNQNWQDGK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.51544	2047.01633	0.67157	0.00068804	0.68731	0.00070416	1.3589	0.0013922	1025.01729112578	16.723	0.23052	16.723	16.599	16.83	0	117	160	1.24546401832526	0.105344724911248	1.24546401832526	502.204018173298	0	42.4777780532981						1980	27	5	NaN	NaN	NaN	8.4087E-05	1	32482	90.156	72.058	1	580490			10059	326	8478	8704	10059	10059		
IQAGEGETAVLNQLQEK	17	Unmodified	_IQAGEGETAVLNQLQEK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.47598	1826.93741	2.0633	0.0018868	-3.3594	-0.0030721	-1.2961	-0.0011852	914.471688384722	11.154	0.14187	11.154	11.092	11.234	0	270	37	1.14398322290989	0.0239648752236348	1.14398322290989	461.658453699843	0	9.67110969574452						268	17	3	NaN	NaN	NaN	7.8999E-14	1	27899	146.75	109.24	1	70705			10060	1810	8479	8705	10060	10060		
IQAGEIGEMK	10	Unmodified	_IQAGEIGEMK_			0	0	0	P16989	P16989	P16989	YBX3	Y-box-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.276249	1074.53795	1.163	0.00062599	0.25681	0.00013823	1.4198	0.00076423	538.27575480681	6.1614	0.15072	6.1614	6.0904	6.2411	0	660	37	0.882057989648486	0.0243991920216602	0.882057989648486	357.82915245175	0	9.89814989952924						278	18	3	NaN	NaN	NaN	0.0087816	1	6069	52.591	11.566	1	142690			10061	733	8480	8706	10061	10061		
IQAGEVSQPSK	11	Unmodified	_IQAGEVSQPSK_			0	0	0	Q9BRP8	Q9BRP8	Q9BRP8	WIBG	Partner of Y14 and mago	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.303852	1142.59315	1.5741	0.00090088	-0.97374	-0.00055728	0.60038	0.0003436	572.30349364456	3.1375	0.15074	3.1375	3.1109	3.2617	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.207256432661	0	9.06205814361061						201	18	3	NaN	NaN	NaN	0.0059032	1	7856	65.879	25.377	1	59604			10062	2710	8481	8707	10062	10062		
IQALESNLENLLTR	14	Unmodified	_IQALESNLENLLTR_			0	0	0	O60343	O60343	O60343	TBC1D4	TBC1 domain family member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.446494	1612.87843	1.0182	0.00082216	1.1321	0.00091408	2.1503	0.0017362	807.447139512497	16.386	0.079813	16.386	16.351	16.431	0	312	28	1.11600111266355	0.0180045964949538	1.11600111266355	450.816219023113	0	7.27307887491224						160	10	3	NaN	NaN	NaN	0.0017601	1	21987	69.327	64.498	1	30828			10063	258	8482	8708	10063	10063		
IQALPTVPVTEEHVGSGLECPVCK	24	Unmodified	_IQALPTVPVTEEHVGSGLECPVCK_			0	0	0	Q9BV68	Q9BV68	Q9BV68	RNF126	E3 ubiquitin-protein ligase RNF126	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	874.108496	2619.30366	1.5392	0.0013455	-1.4583	-0.0012747	0.080995	7.0798E-05	874.441579502857	12.227	0.15965	12.227	12.121	12.281	0	438	37	1.03173026378327	0.024143864458734	1.03173026378327	623.110705541383	0	14.5816217140041						346	19	4	NaN	NaN	NaN	0.00027196	1	37315	48.476	47.779	1	66242			10064	2758	8483	8709	10064	10064		
IQALQQQADEAEDR	14	Unmodified	_IQALQQQADEAEDR_			0	0	0	P67936	P67936	P67936	TPM4	Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.88954	1613.76453	3.6077	0.0029146	-1.3561	-0.0010956	2.2516	0.001819	807.888714069389	5.6913	0.29253	5.6913	5.6471	5.9396	0	411	94	1.04982941439551	0.0622985841440777	1.04982941439551	424.083738893958	0	25.1658184933148						1456	34	5	NaN	NaN	NaN	2.3992E-43	1	22000	256.7	242.24	1	989910			10065	1443	8484	8710	10065	10065		
IQAVIDSGVCR	11	Unmodified	_IQAVIDSGVCR_			0	0	0	O60684;O15131	O60684	O60684	KPNA6;KPNA5	Importin subunit alpha-7;Importin subunit alpha-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.31898	1216.62341	1.3875	0.00084541	-1.4225	-0.00086678	-0.035073	-2.1371E-05	609.318836106915	6.7644	0.15958	6.7644	6.7111	6.8707	0	591	46	0.928742107665821	0.0303913445314729	0.928742107665821	376.210293248407	0	12.3107766343601						491	19	3	NaN	NaN	NaN	0.0026416	1	9926	61.48	40.205	1	176530			10066	274	8485	8711	10066	10066		
IQDALSTVLQYAEDVLSGK	19	Unmodified	_IQDALSTVLQYAEDVLSGK_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.53878	2049.063	0.54555	0.00055949	0.98262	0.0010077	1.5282	0.0015672	1026.04099288607	20.306	0.026585	20.306	20.306	20.332	0	144	49	1.22760721615852	0.0317824577719281	1.22760721615852	495.000351541476	0	12.8154409349164						104	4	4	NaN	NaN	NaN	0.057873	1	32536	14.004	11.258	1	44172			10067	72	8486	8712	10067	10067		
IQDCLLAGQAPQALTLLR	18	Unmodified	_IQDCLLAGQAPQALTLLR_			0	0	0	Q9UNS1	Q9UNS1	Q9UNS1	TIMELESS	Protein timeless homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.048592	1980.08263	0.49607	0.00049163	-0.019143	-1.8972E-05	0.47693	0.00047266	991.550559485311	16.794	0.070923	16.794	16.759	16.83	0	168	34	1.21171599086077	0.0218639303510766	1.21171599086077	488.707176281626	0	8.8181221877764						250	9	4	NaN	NaN	NaN	0.0014836	1	31291	66.509	58.862	1	54079			10068	3305	8487	8713	10068	10068		
IQDGLGELK	9	Unmodified	_IQDGLGELK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.771657	971.528761	-0.060368	-2.9385E-05	0.37082	0.00018051	0.31045	0.00015112	486.772199563819	7.0303	0.13309	7.0303	6.9949	7.128	0	699	49	0.85560534332665	0.0325955612165331	0.85560534332665	347.563365623634	0	13.2409446121052						258	16	3	NaN	NaN	NaN	0.0091117	1	3667	52.591	5.7555	1	66101			10069	1694	8488	8714	10069	10069		
IQDHQVVINCAIPK	14	Unmodified	_IQDHQVVINCAIPK_			0	0	0	Q8N8S7	Q8N8S7	Q8N8S7	ENAH	Protein enabled homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.627613	1633.86101	0.26968	0.00014714	0.035755	1.9509E-05	0.30543	0.00016665	545.627695426682	7.4205	0.070929	7.4205	7.394	7.4649	0	687	34	0.863749705078866	0.0223954425033767	0.863749705078866	523.316385955706	0	13.5686321672038						201	9	3	NaN	NaN	NaN	0.0015003	1	22598	71.896	55.609	1	49490			10070	2273	8489	8715	10070	10070		
IQDLIDDK	8	Unmodified	_IQDLIDDK_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.25584	958.497126	-0.026688	-1.2817E-05	1.1538	0.00055413	1.1271	0.00054131	480.256678914034	6.6402	0.31921	6.6402	6.4717	6.7909	0	729	55	0.835224628594324	0.036700593052475	0.835224628594324	339.348692418999	0	14.9113158747722						522	37	3	NaN	NaN	NaN	0.00025955	1	3404	125.5	71.818	1	236620			10071	1860	8490	8716	10071	10071		
IQDLLAEGTITGVIDDR	17	Unmodified	_IQDLLAEGTITGVIDDR_			0	0	0	Q96HY6	Q96HY6	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.98618	1827.95781	1.5119	0.0013834	-0.0012859	-1.1766E-06	1.5106	0.0013822	914.985828419014	16.094	0.18622	16.094	16.049	16.236	0	249	37	1.15795408347545	0.0239385276642174	1.15795408347545	467.29446638513	0	9.66043616973292						421	22	4	NaN	NaN	NaN	0.00016801	1	27923	41.284	36.467	1	84355			10072	2553	8491	8717	10072	10072		
IQDMVAIR	8	Unmodified	_IQDMVAIR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.262945	944.511337	-0.96691	-0.0004576	-0.76305	-0.00036112	-1.73	-0.00081873	473.26261511384	7.5358	0.21279	7.5358	7.4294	7.6422	0	741	40	0.827064408645228	0.0265299389954775	0.827064408645228	336.103580267784	0	10.781273365725						205	25	2	NaN	NaN	NaN	0.022894	1	3149	34.931	16.529	1	42787			10073	1991	8492	8718	10073	10073		
IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK	34	Unmodified	_IQDVGLVPMGGVMSGAVPAAAAQEAVEEDIPIAK_			0	0	0	P52815	P52815	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1111.90715	3332.69961	1.6374	0.0018206	-0.60668	-0.00067457	1.0307	0.001146	1112.24066913252	19.658	0.062075	19.658	19.623	19.685	0	246	100	1.1599488233373	0.065917079307763	1.1599488233373	699.755710868751	0	39.7654204749193						554	8	5	NaN	NaN	NaN	1.5495E-10	1	38569	78.905	75.542	1	104110			10074	1224	8493	8719	10074	10074		
IQDVLFLYK	9	Unmodified	_IQDVLFLYK_			0	0	0	Q9H0X4	Q9H0X4	Q9H0X4	ITFG3	Protein ITFG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.828975	1137.6434	0.33548	0.00019117	-0.3907	-0.00022263	-0.055217	-3.1464E-05	570.33099141241	14.178	0.15074	14.178	14.09	14.24	0	618	73	0.910492137470517	0.0486632438159282	0.910492137470517	369.104743096501	0	19.7276103413932						289	18	3	NaN	NaN	NaN	0.00087654	1	7744	67.507	54.68	1	60332			10075	2853	8494	8720	10075	10075		
IQEAGTEVVK	10	Unmodified	_IQEAGTEVVK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.295496	1072.57644	2.5702	0.001381	0.58138	0.00031237	3.1516	0.0016933	537.295947819609	3.9002	0.18621	3.9002	3.8647	4.0509	0	669	43	0.875957769340875	0.0284736285227984	0.875957769340875	355.36266740906	0	11.5513155277909						646	22	5	NaN	NaN	NaN	0.00076439	1	6022	104.39	59.627	1	781130			10076	1023	8495	8721	10076	10076		
IQEENVIPR	9	Unmodified	_IQEENVIPR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.301113	1096.58767	1.0045	0.0005518	0.93215	0.00051203	1.9367	0.0010638	549.301625684855	6.4096	0.25713	6.4096	6.2944	6.5515	0	642	67	0.894250814548268	0.0447132521967323	0.894250814548268	362.683135321351	0	18.1344453181371						791	30	5	NaN	NaN	NaN	0.0012821	1	6627	91.783	70.508	1	384960			10077	1055	8496	8722	10077	10077		
IQEFCNLHQSK	11	Unmodified	_IQEFCNLHQSK_			0	0	0	P53384	P53384	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.562721	1402.66633	-0.20952	-9.8176E-05	0.087113	4.0818E-05	-0.12241	-5.7358E-05	468.563026557447	4.5031	0.070943	4.5031	4.4854	4.5563	0	816	22	0.775960037304758	0.0143351345420983	0.775960037304758	470.777689961599	0	8.6971766593274						151	9	4	NaN	NaN	NaN	0.00042116	1	15532	65.933	48.463	1	34125			10078	1234	8497	8723	10078	10078		
IQEFCNLHQSK	11	Unmodified	_IQEFCNLHQSK_			0	0	0	P53384	P53384	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.340443	1402.66633	2.2829	0.0016033	-1.7234	-0.0012104	0.55942	0.00039291	702.339321122462	4.5209	0.088657	4.5209	4.4854	4.5741	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	401.821351094597	0	6.52835472792481						90	11	2	NaN	NaN	NaN	0.00074106	1	15533	73.655	58.507	1	19627			10079	1234	8497	8723	10079	10079		
IQEIIEQLDVTTSEYEK	17	Unmodified	_IQEIIEQLDVTTSEYEK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.51497	2037.01538	1.0558	0.0010764	1.881	0.0019177	2.9368	0.0029941	1020.01843754398	14.817	0.43452	14.817	14.764	15.198	0	168	76	1.21171599086077	0.0496975993380671	1.21171599086077	488.612077674693	0	20.040048535439						1483	50	5	NaN	NaN	NaN	1.6073E-25	1	32290	194.55	165.42	1	1161300			10080	635	8498	8724	10080	10080		
IQELAHELAAAK	12	Unmodified	_IQELAHELAAAK_			0	0	0	O75381	O75381	O75381	PEX14	Peroxisomal membrane protein PEX14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.361702	1292.70885	1.7572	0.0011375	-1.2781	-0.00082739	0.47911	0.00031016	647.861520440165	6.7289	0.11526	6.7289	6.7023	6.8175	0	486	28	0.999498404980629	0.0181517240953996	0.999498404980629	404.604496506334	0	7.34795488591442						225	14	3	NaN	NaN	NaN	5.6557E-05	1	12164	90.689	72.353	1	60205			10081	328	8499	8725	10081	10081		
IQELENLPGSLAGDLR	16	Unmodified	_IQELENLPGSLAGDLR_			0	0	0	P51532	P51532	P51532	SMARCA4	Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.962508	1723.91046	2.2102	0.0019073	-2.9872	-0.0025778	-0.77701	-0.00067053	863.461197369164	15.074	0.18623	15.074	14.976	15.163	0	327	40	1.10599442759226	0.0260245516783328	1.10599442759226	446.52885831911	0	10.5070270331207						479	22	3	NaN	NaN	NaN	0.001171	1	25172	61.067	55.039	1	125440			10082	1187	8500	8726	10082	10082		
IQELFHVEPGLQR	13	Unmodified	_IQELFHVEPGLQR_			0	0	0	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.619335	1564.83618	0.76843	0.00040159	1.2855	0.00067181	2.0539	0.0010734	522.619873365661	10.676	0.14184	10.676	10.622	10.764	0	639	34	0.896281965493857	0.0223395647977513	0.896281965493857	543.227652057944	0	13.5397897093601						367	17	4	NaN	NaN	NaN	0.0010006	1	20503	106.35	90.066	1	114940			10083	2632	8501	8727	10083	10083		
IQELGDLYTPAPGR	14	Unmodified	_IQELGDLYTPAPGR_			0	0	0	Q9NWS0	Q9NWS0	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.401555	1528.78856	2.3039	0.0017634	-1.2908	-0.00098801	1.013	0.00077539	765.901874105572	10.888	0.17735	10.888	10.8	10.977	0	426	40	1.03977710643793	0.0261396123563653	1.03977710643793	420.221685827514	0	10.5642179494604						313	21	2	NaN	NaN	NaN	1.4123E-05	1	19390	73.891	63.641	1	116660			10084	3082	8502	8728	10084	10084		
IQETQAELPR	10	Unmodified	_IQETQAELPR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.817127	1183.6197	1.3816	0.00081904	-0.25903	-0.00015356	1.1226	0.00066548	592.817379576003	5.3898	0.27485	5.3898	5.2835	5.5583	0	591	34	0.928742107665821	0.0222931596374992	0.928742107665821	376.327931211842	0	9.03322739144517						603	32	4	NaN	NaN	NaN	2.9315E-07	1	8978	118.91	88.315	1	246030			10085	1757	8503	8729	10085	10085		
IQEVADELQK	10	Unmodified	_IQEVADELQK_			0	0	0	P18085	P18085	P18085	ARF4	ADP-ribosylation factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.81151	1171.60847	1.7188	0.0010086	0.49941	0.00029306	2.2183	0.0013017	586.812183922845	6.055	0.23942	6.055	5.9929	6.2323	0	654	70	0.886123392477847	0.046716501410481	0.886123392477847	359.101157333453	0	18.9318438780444						1040	28	4	NaN	NaN	NaN	1.086E-07	1	8650	170.69	74.378	1	579280			10086	751	8504	8730	10086	10086		
IQEYCYDNIHFMK	13	Unmodified	_IQEYCYDNIHFMK_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.892183	1759.76981	2.2585	0.0019895	-3.0246	-0.0026644	-0.7661	-0.00067485	881.39050554067	10.303	0.097552	10.303	10.25	10.347	0	261	28	1.14997238118939	0.0179674763675075	1.14997238118939	464.208832409498	0	7.25292308088257						186	12	4	NaN	NaN	NaN	0.00021976	1	26125	64.266	57.126	1	31540			10087	2112	8505	8731	10087	10087		
IQEYCYDNIHFMK	13	Unmodified	_IQEYCYDNIHFMK_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.597214	1759.76981	0.3646	0.00021424	-0.71437	-0.00041976	-0.34976	-0.00020552	587.931240245744	10.303	0.14188	10.303	10.25	10.392	0	669	52	0.875957769340875	0.0345823239613182	0.875957769340875	530.393835055112	0	20.9396526555884						542	17	5	NaN	NaN	NaN	0.00020394	1	26126	96.946	93.21	1	207760			10088	2112	8505	8731	10088	10088		
IQFDEGYDNYPGQEK	15	Unmodified	_IQFDEGYDNYPGQEK_			0	0	0	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.897031	1801.77951	1.9825	0.001788	0.62675	0.00056527	2.6092	0.0023533	901.897199518388	9.3278	0.13305	9.3278	9.2656	9.3987	0	327	46	1.10599442759226	0.0300366027940016	1.10599442759226	446.374879897007	0	12.1226514620645						538	16	4	NaN	NaN	NaN	6.2898E-09	1	27251	151.08	146.55	1	124310			10089	2425	8506	8732	10089	10089		
IQFENNEDQDVNPLK	15	Unmodified	_IQFENNEDQDVNPLK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.931405	1801.84826	2.3228	0.002095	-0.30415	-0.00027432	2.0186	0.0018207	901.930666766629	10.135	0.097527	10.135	10.099	10.197	0	252	61	1.15595906938629	0.039914016914268	1.15595906938629	466.540274701826	0	16.1091312908875						410	12	4	NaN	NaN	NaN	1.3965E-08	1	27255	126.17	117.37	1	85641			10090	408	8507	8733	10090	10090		
IQFGTLSDFFDALDK	15	Unmodified	_IQFGTLSDFFDALDK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.927603	1715.84065	1.5147	0.0013011	-0.28138	-0.00024169	1.2334	0.0010594	858.927418010412	20.049	0.044346	20.049	20.04	20.084	0	297	34	1.12600091227925	0.0219935068303474	1.12600091227925	454.623224148101	0	8.87988533268265						112	6	5	NaN	NaN	NaN	3.025E-08	1	24932	77.696	60.704	1	45525			10091	1901	8508	8734	10091	10091		
IQFHNVKPEYLDAYNSLTEAVLPK	24	Unmodified	_IQFHNVKPEYLDAYNSLTEAVLPK_			0	0	1	Q9BPW8	Q9BPW8	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	698.118172	2788.44358	0.53571	0.00037399	0.065217	4.5529E-05	0.60093	0.00041952	698.368201416597	15.624	0.15074	15.624	15.526	15.677	0	498	28	0.991429299781895	0.0181617640607624	0.991429299781895	798.104267559819	0	14.6202875046134						235	18	4	NaN	NaN	NaN	8.3215E-05	1	37863	50.131	48.959	1	43532			10092	2686	8509	8735	10092	10092		
IQFKPDDGTTPER	13	Unmodified	_IQFKPDDGTTPER_			0	0	1	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.375537	1502.73652	1.8761	0.0014116	-1.2575	-0.0009461	0.61865	0.00046546	752.374347249393	5.2036	0.1419	5.2036	5.1681	5.31	0	474	40	1.00756305028564	0.0262010489671465	1.00756305028564	407.265848493409	0	10.5906944840793						340	17	4	NaN	NaN	NaN	0.022503	1	18594	77.157	56.069	1	106770			10093	2473	8510	8736	10093	10093		
IQGGYENVPTIDIHMNQIGFER	22	Unmodified	_IQGGYENVPTIDIHMNQIGFER_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	844.416429	2530.22746	0.92961	0.00078498	0.20229	0.00017082	1.1319	0.00095579	844.750651103903	14.657	0.079832	14.657	14.631	14.71	0	501	61	0.98941132619024	0.0403567011787407	0.98941132619024	597.663325670306	0	24.3778493343539						597	10	6	NaN	NaN	NaN	1.3262E-07	1	36962	60.734	51.22	1	139480			10094	1531	8511	8737	10094	10094		
IQGIEEYK	8	Unmodified	_IQGIEEYK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.258382	978.502212	0.32928	0.00016143	-1.8489	-0.00090643	-1.5196	-0.000745	490.257851194983	5.5139	0.19504	5.5139	5.443	5.6381	0	717	97	0.84338031290707	0.06521835985682	0.84338031290707	342.563256658634	0	26.4903192599763						634	23	3	NaN	NaN	NaN	0.0089718	1	3808	53.878	37.331	1	173540			10095	3465	8512	8738	10095	10095		
IQGLTVEQAEAVVR	14	Unmodified	_IQGLTVEQAEAVVR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.922655	1511.83076	0.83291	0.00063045	2.2639	0.0017136	3.0968	0.0023441	756.924802101709	11.926	0.17737	11.926	11.855	12.032	0	393	52	1.0618830335572	0.034140156185883	1.0618830335572	429.198886347891	0	13.7989934405848						587	21	4	NaN	NaN	NaN	9.7249E-12	1	18867	193.94	110.58	1	265560			10096	1737	8513	8739	10096	10096		
IQHAVQLATEPLEK	14	Unmodified	_IQHAVQLATEPLEK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.294629	1575.86206	0.37397	0.00019682	-0.11115	-5.8497E-05	0.26282	0.00013832	526.294324841215	7.3142	0.070952	7.3142	7.2875	7.3585	0	696	52	0.857641857947968	0.0346351908401327	0.857641857947968	519.776409798931	0	20.990760864516						248	9	3	NaN	NaN	NaN	0.022962	1	20859	43.306	40.826	1	61424			10097	1137	8514	8740	10097	10097		
IQHAVQLATEPLEK	14	Unmodified	_IQHAVQLATEPLEK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.938305	1575.86206	2.2692	0.0017903	-0.67683	-0.00053397	1.5924	0.0012563	789.438607100872	7.3142	0.062091	7.3142	7.2875	7.3496	0	381	31	1.06991323971056	0.020067214614357	1.06991323971056	432.285150731015	0	8.10790872787561						169	8	4	NaN	NaN	NaN	0.0058426	1	20860	58.313	33.624	1	38233			10098	1137	8514	8740	10098	10098		
IQHILCTGNLCTK	13	Unmodified	_IQHILCTGNLCTK_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.934049	1556.78032	-0.93178	-0.00048446	-0.99105	-0.00051528	-1.9228	-0.00099974	519.933751449456	6.6845	0.19507	6.6845	6.6402	6.8353	0	798	34	0.788241307691771	0.0225078287031693	0.788241307691771	477.766940834141	0	13.6423914344477						464	23	5	NaN	NaN	NaN	0.00019182	1	20262	108.4	103.57	1	202530			10099	3183	8515	8741	10099	10099		
IQHILCTGNLCTK	13	Unmodified	_IQHILCTGNLCTK_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.397435	1556.78032	2.1856	0.0017034	-1.5734	-0.0012263	0.61216	0.00047712	779.396462423462	6.6845	0.15072	6.6845	6.6402	6.7909	0	381	46	1.06991323971056	0.030107052507665	1.06991323971056	432.331306780882	0	12.1656793007633						445	18	4	NaN	NaN	NaN	2.3245E-07	1	20263	99.276	82.624	1	130030			10100	3183	8515	8741	10100	10100		
IQHMELQLIK	10	Unmodified	_IQHMELQLIK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.240919	1251.70093	-2.1988	-0.00091963	-1.3152	-0.00055005	-3.514	-0.0014697	418.240345755872	9.4164	0.1064	9.4164	9.3721	9.4785	0	849	28	0.753417699604308	0.0184591580359084	0.753417699604308	457.638168514222	0	11.2123929133924						211	13	3	NaN	NaN	NaN	0.064791	1	10974	29.31	27.15	1	60695			10101	334	8516	8742	10101	10101		
IQHMELQLIK	10	Unmodified	_IQHMELQLIK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.857741	1251.70093	0.7336	0.00045987	-1.5092	-0.00094606	-0.7756	-0.00048619	626.856781095182	9.4164	0.097552	9.4164	9.381	9.4785	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	401.477047505595	0	6.53693923964715						190	12	4	NaN	NaN	NaN	0.013866	1	10975	41.796	29.729	1	48981			10102	334	8516	8742	10102	10102		
IQHSITAQDHQPTPDSCIISMVVGQLK	27	Unmodified	_IQHSITAQDHQPTPDSCIISMVVGQLK_			0	0	0	P61970	P61970	P61970	NUTF2	Nuclear transport factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	751.63112	3002.49538	-0.46125	-0.00034669	-0.6976	-0.00052434	-1.1589	-0.00087103	751.881410944652	15.837	0.14189	15.837	15.783	15.925	0	666	52	0.877991458330206	0.0345727248070983	0.877991458330206	706.536449257406	0	27.8213301446195						827	17	6	NaN	NaN	NaN	8.2915E-07	1	38228	82.87	76.022	1	281320			10103	1359	8517	8743	10103	10103		
IQHSITAQDHQPTPDSCIISMVVGQLK	27	Unmodified	_IQHSITAQDHQPTPDSCIISMVVGQLK_			0	0	0	P61970	P61970	P61970	NUTF2	Nuclear transport factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	751.63112	3002.49538	0.66128	0.00049704	0.3747	0.00028164	1.036	0.00077868	751.882415710507	15.837	0.14189	15.837	15.783	15.925	0	474	85	1.00756305028564	0.0564759809441788	1.00756305028564	810.805173187244	0	45.4472973154215						1016	17	6	NaN	NaN	NaN	4.8965E-10	1	38229	98.942	94.294	1	235800			10104	1359	8517	8743	10104	10104		
IQHSITAQDHQPTPDSCIISMVVGQLK	27	Unmodified	_IQHSITAQDHQPTPDSCIISMVVGQLK_			0	0	0	P61970	P61970	P61970	NUTF2	Nuclear transport factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1001.83907	3002.49538	1.3559	0.0013584	0.22615	0.00022656	1.582	0.001585	1002.17388497461	15.828	0.10641	15.828	15.792	15.899	-1.7764E-15	366	34	1.07994477139643	0.0220602476695482	1.07994477139643	651.790100598889	0	13.314246643538						411	13	5	NaN	NaN	NaN	0.010374	1	38230	14.646	14.268	1	94262			10105	1359	8517	8743	10105	10105		
IQIADLMEEK	10	Unmodified	_IQIADLMEEK_			0	0	0	Q16666;Q6K0P9	Q16666	Q16666	IFI16;PYHIN1	Gamma-interferon-inducible protein 16;Pyrin and HIN domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.310289	1188.60602	1.1875	0.00070691	2.3411	0.0013937	3.5285	0.0021006	595.809817334239	12.742	0.20396	12.742	12.662	12.866	0	576	52	0.938871150116794	0.0344339850202118	0.938871150116794	380.413837455077	0	13.9520363138008						496	24	4	NaN	NaN	NaN	0.0077335	1	9119	67.507	48.251	1	163460			10106	1899	8518	8744	10106	10106		
IQIAPDSGGLPER	13	Unmodified	_IQIAPDSGGLPER_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.862066	1351.70958	1.7739	0.0012007	-0.62108	-0.00042039	1.1528	0.00078029	676.86159954062	8.6091	0.21291	8.6091	8.547	8.7599	0	528	46	0.971237000454584	0.0303115059679868	0.971237000454584	392.98256926969	0	12.2646619601164						761	25	4	NaN	NaN	NaN	3.9586E-11	1	13943	134.2	90.465	1	498550			10107	2473	8519	8745	10107	10107		
IQIEAIPLALQGR	13	Unmodified	_IQIEAIPLALQGR_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.427376	1420.8402	1.1108	0.00079025	-0.21548	-0.0001533	0.89531	0.00063695	711.427216823783	15.34	0.10638	15.34	15.304	15.411	0	459	46	1.01763759082241	0.030215279505817	1.01763759082241	411.554358770265	0	12.2197038456798						319	13	4	NaN	NaN	NaN	0.00025006	1	16123	94.66	88.396	1	119370			10108	2849	8520	8746	10108	10108		
IQILEGWK	8	Unmodified	_IQILEGWK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.78711	985.559667	-0.39671	-0.00019589	0.72393	0.00035747	0.32722	0.00016158	493.786977341871	12.369	0.46995	12.369	12.21	12.68	0	723	82	0.839303037468863	0.055070048248984	0.839303037468863	340.873305090498	0	22.366068654697						1500	54	4	NaN	NaN	NaN	0.014717	1	3973	65.313	15.987	1	1511700			10109	715	8521	8747	10109	10109		
IQINQEEER	9	Unmodified	_IQINQEEER_			0	0	0	P42696	P42696	P42696	RBM34	RNA-binding protein 34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.791109	1157.56767	2.4193	0.0014027	-0.93309	-0.000541	1.4862	0.00086169	579.790467404456	3.9445	0.09754	3.9445	3.9179	4.0154	0	570	25	0.942920803299286	0.016196370719784	0.942920803299286	382.172220970353	0	6.56449931741975						182	12	3	NaN	NaN	NaN	0.00033801	1	8268	84.368	76.186	1	47667			10110	1054	8522	8748	10110	10110		
IQIVGLTELQSLAVGPR	17	Unmodified	_IQIVGLTELQSLAVGPR_			0	0	0	Q9BT22	Q9BT22	Q9BT22	ALG1	Chitobiosyldiphosphodolichol beta-mannosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.527818	1793.04108	1.0841	0.000973	-0.53756	-0.00048248	0.54653	0.00049053	897.527079846396	18.692	0.053215	18.692	18.665	18.718	0	267	37	1.14597988355104	0.023954989793705	1.14597988355104	462.530068195114	0	9.6684969971397						141	7	3	NaN	NaN	NaN	1.9508E-06	1	27055	91.939	78.162	1	31815			10111	2729	8523	8749	10111	10111		
IQLDFDIPVSDYR	13	Unmodified	_IQLDFDIPVSDYR_			0	0	0		REV__Q8NFW1	REV__Q8NFW1			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.901388	1579.78822	1.9638	0.0015532	8.3494	0.0066035	10.313	0.0081567	791.409358358382	12.999	0.12414	12.999	12.955	13.079	0	354	31	1.08796502040166	0.020047861495702	1.08796502040166	439.569197384832	0	8.09991334435972						296	15	4	NaN	NaN	NaN	0.014756	1	20966	53.028	28.207	1	73290	+		10112	3504	8524	8750	10112	10112		
IQLIFER	7	Unmodified	_IQLIFER_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.774003	917.533452	-1.7054	-0.00078409	-0.93797	-0.00043125	-2.6434	-0.0012153	459.773373306295	11.695	0.097564	11.695	11.66	11.758	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	337.07483811154	0	8.29505272869943						166	12	2	NaN	NaN	NaN	0.0040474	1	2661	104.76	16.414	1	61791			10113	1793	8525	8751	10113	10113		
IQLINNMLDK	10	Unmodified	_IQLINNMLDK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.334098	1200.65364	1.0352	0.0006225	0.58895	0.00035415	1.6241	0.00097665	601.33485445052	12.334	0.31921	12.334	12.263	12.582	0	540	55	0.963152256458504	0.0364015060107022	0.963152256458504	390.207181016014	0	14.7475427170799						1007	37	5	NaN	NaN	NaN	3.9612E-10	1	9490	150.17	87.294	1	1225900			10114	484	8526	8752	10114	10114		
IQLLDLPGIIEGAK	14	Unmodified	_IQLLDLPGIIEGAK_			0	0	0	Q9Y295	Q9Y295	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.442692	1478.87083	0.96079	0.00071141	-0.83325	-0.00061698	0.12754	9.4435E-05	740.441981676471	18.958	0.13298	18.958	18.914	19.046	0	420	40	1.04379886199097	0.0261396123563653	1.04379886199097	421.974811085681	0	10.5674171409718						411	16	4	NaN	NaN	NaN	0.0047232	1	17881	42.446	33.972	1	177670			10115	3339	8527	8753	10115	10115		
IQLLVFK	7	Unmodified	_IQLLVFK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.783839	859.553125	-1.7254	-0.00074328	-1.6879	-0.00072713	-3.4133	-0.0014704	430.783029918719	13.868	0.13301	13.868	13.815	13.948	0	804	31	0.78414869089473	0.0204659356679318	0.78414869089473	319.114748780039	0	8.32875447610388						272	16	3	NaN	NaN	NaN	0.0058068	1	1715	105.22	72.246	1	99700			10116	3329	8528	8754	10116	10116		
IQLVAVNYIPEVR	13	Unmodified	_IQLVAVNYIPEVR_			0	0	0	Q9UJW0	Q9UJW0	Q9UJW0	DCTN4	Dynactin subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.440483	1512.86641	1.6209	0.0012278	-1.345	-0.0010187	0.27595	0.00020901	757.43903095302	15.526	0.10641	15.526	15.464	15.571	0	387	40	1.06589869032374	0.0261035740601534	1.06589869032374	430.819299457134	0	10.5506495054489						268	13	3	NaN	NaN	NaN	0.00049681	1	18906	44.82	39.669	1	66135			10117	3251	8529	8755	10117	10117		
IQLVEEELDR	10	Unmodified	_IQLVEEELDR_			0	0	0	CON__Q3SX28;P07951;P06753;P09493;P67936	CON__Q3SX28;P06753;P09493;P67936	P67936	TPM2;TPM3;TPM1;TPM4	Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.330067	1242.64558	1.8244	0.0011354	1.5502	0.00096477	3.3746	0.0021001	622.331221999323	10.161	0.31034	10.161	10.064	10.374	0	564	49	0.946969335010767	0.0323748127993709	0.946969335010767	383.503559470629	0	13.1111488901727						869	36	4	NaN	NaN	NaN	3.6382E-14	1	10704	213.45	162.02	1	980440		+	10118	1443;41;548;602	8530	8756	10118	10118		
IQLVEEELDRAQER	14	Unmodified	_IQLVEEELDRAQER_			0	0	1	CON__Q3SX28;P07951;P06753;P09493;P67936	CON__Q3SX28;P06753;P09493;P67936	P67936	TPM2;TPM3;TPM1;TPM4	Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.635602	1726.88498	0.77991	0.00044972	0.19942	0.00011499	0.97933	0.00056471	576.635854636432	9.7445	0.21283	9.7445	9.6913	9.9041	0	684	46	0.86578508874114	0.0305265242845556	0.86578508874114	524.312195644509	0	18.4866073361264						760	25	6	NaN	NaN	NaN	4.4416E-17	1	25241	188.6	162.99	1	810400		+	10119	1443;41;548;602	8531	8757	10119	10119		
IQNLEALLQK	10	Unmodified	_IQNLEALLQK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.348063	1168.68157	0.20873	0.00012218	-3.0113	-0.0017627	-2.8026	-0.0016405	585.347446586161	12.582	0.097516	12.582	12.538	12.635	0	603	31	0.920633820089869	0.0202735302015807	0.920633820089869	373.097382376679	0	8.21607992741991						184	12	3	NaN	NaN	NaN	0.00056592	1	8584	103.8	38.648	1	47342			10120	1810	8532	8758	10120	10120		
IQNWHEEHR	9	Unmodified	_IQNWHEEHR_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.867132	1247.57957	-0.86858	-0.00036208	1.4034	0.00058503	0.53483	0.00022295	416.867754651414	2.0113	0.17743	2.0113	1.9935	2.171	0	888	19	0.726732155490709	0.0123275740709815	0.726732155490709	441.444806218256	0	7.48823828117401						97	21	2	NaN	NaN	NaN	0.022998	1	10844	24.121	18.813	1	18152			10121	962	8533	8759	10121	10121		
IQPALQEK	8	Unmodified	_IQPALQEK_			0	0	0	Q99471	Q99471	Q99471	PFDN5	Prefoldin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.768917	925.523281	-0.24575	-0.00011397	-0.96013	-0.00044528	-1.2059	-0.00055925	463.768433822835	3.7317	0.18618	3.7317	3.6696	3.8558	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	325.409010751311	0	8.31016286666511						258	22	3	NaN	NaN	NaN	0.014354	1	2797	51.864	27.045	1	87701			10122	2642	8534	8760	10122	10122		
IQPEDMFVCDINEK	14	Unmodified	_IQPEDMFVCDINEK_			0	0	0	Q96GX9	Q96GX9	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.394755	1736.77496	2.1701	0.0018867	0.34305	0.00029825	2.5132	0.0021849	869.394551580812	13.318	0.15078	13.318	13.265	13.416	0	336	37	1.09998710857178	0.024034244886211	1.09998710857178	444.077240474489	0	9.70289657286486						341	18	4	NaN	NaN	NaN	0.034125	1	25505	44.82	36.445	1	73232			10123	2547	8535	8761	10123	10123		
IQPGSQQADFLDALIVSMDVIQHETIGK	28	Unmodified	_IQPGSQQADFLDALIVSMDVIQHETIGK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1018.52526	3052.55394	0.92947	0.00094669	-0.10156	-0.00010344	0.82792	0.00084325	1018.8595586663	20.182	0.062075	20.182	20.173	20.235	0	162	49	1.21569043230068	0.0318042675507773	1.21569043230068	733.662563960306	0	19.1937024889011						172	8	5	NaN	NaN	NaN	2.031E-06	1	38294	63.95	61.036	1	60192			10124	674	8536	8762	10124	10124		
IQQEIAVQNPLVSER	15	Unmodified	_IQQEIAVQNPLVSER_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.4705	1722.92645	2.9568	0.0025501	-3.1387	-0.002707	-0.18191	-0.00015689	862.468341555778	11.27	0.19512	11.27	11.172	11.367	0	327	58	1.10599442759226	0.0380411302343659	1.10599442759226	446.530893084815	0	15.3586125153332						861	23	4	NaN	NaN	NaN	7.6248E-12	1	25138	128.68	113.07	1	315800			10125	2529	8537	8763	10125	10125		
IQQLAISGLK	10	Unmodified	_IQQLAISGLK_			0	0	0	Q9Y2T2;P53677	Q9Y2T2	Q9Y2T2	AP3M1;AP3M2	AP-3 complex subunit mu-1;AP-3 complex subunit mu-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.832049	1069.64954	0.84827	0.00045453	-6.7468	-0.0036151	-5.8985	-0.0031606	535.832016033412	9.7179	0.079812	9.7179	9.6736	9.7534	0	639	28	0.896281965493857	0.0182803602689122	0.896281965493857	363.620531907948	0	7.41632051113299						137	10	2	NaN	NaN	NaN	0.00051154	1	5953	74.269	6.8048	1	51535			10126	3352	8538	8764	10126	10126		
IQQLTALGAAQATAK	15	Unmodified	_IQQLTALGAAQATAK_			0	0	0	Q99471	Q99471	Q99471	PFDN5	Prefoldin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.925197	1483.83584	2.4908	0.0018505	-0.075332	-5.5966E-05	2.4155	0.0017945	742.925154889113	8.8487	0.1775	8.8487	8.8044	8.9819	0	339	106	1.09798411722691	0.0702111423067928	1.09798411722691	443.866421284454	0	28.3832598131918						862	21	5	NaN	NaN	NaN	4.2067E-17	1	18037	187.47	141.03	1	370720			10127	2642	8539	8765	10127	10127		
IQQQAETTSEELGAVTVK	18	Unmodified	_IQQQAETTSEELGAVTVK_			0	0	0	Q70J99	Q70J99	Q70J99	UNC13D	Protein unc-13 homolog D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.499652	1930.98475	1.8463	0.0017845	-1.5829	-0.0015298	0.26347	0.00025464	966.499209278012	8.769	0.035558	8.769	8.7511	8.7866	0	204	28	1.18784641916898	0.017920622105468	1.18784641916898	479.164932225287	0	7.22899319139998						64	5	2	NaN	NaN	NaN	0.00014993	1	30337	46.206	43.312	1	11119			10128	2102	8540	8766	10128	10128		
IQSATVLLNEDVSDEK	16	Unmodified	_IQSATVLLNEDVSDEK_			0	0	0	Q8NEZ5	Q8NEZ5	Q8NEZ5	FBXO22	F-box only protein 22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.949263	1759.88397	2.7157	0.0023924	-4.6722	-0.0041159	-1.9564	-0.0017235	880.944895183404	10.702	0.1419	10.702	10.649	10.791	0	276	40	1.13998907770044	0.0259708783379724	1.13998907770044	460.178649381333	0	10.4836475634686						389	17	4	NaN	NaN	NaN	1.302E-08	1	26141	127.07	109.66	1	84642			10129	2314	8541	8767	10129	10129		
IQSIYLER	8	Unmodified	_IQSIYLER_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.287474	1020.5604	0.54634	0.00027934	-1.6974	-0.00086788	-1.1511	-0.00058855	511.286694281338	7.6245	0.20402	7.6245	7.5713	7.7753	-8.8818E-16	666	34	0.877991458330206	0.0223674774771112	0.877991458330206	356.417804201464	0	9.08000542861703						273	23	3	NaN	NaN	NaN	0.070263	1	4754	30.593	16.057	1	75173			10130	3431	8542	8768	10130	10130		
IQSLLDIQEK	10	Unmodified	_IQSLLDIQEK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.837528	1185.6605	1.3692	0.00081311	-4.5345	-0.0026928	-3.1653	-0.0018797	593.834695085882	10.835	0.20395	10.835	10.738	10.942	0	573	28	0.940896116921038	0.0182196558414446	0.940896116921038	381.245215130159	0	7.3824904640901						305	24	3	NaN	NaN	NaN	0.0015599	1	9038	76.572	34.497	1	89328			10131	2452	8543	8769	10131	10131		
IQSQFTDAQK	10	Unmodified	_IQSQFTDAQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.296027	1164.5775	2.3226	0.0013548	-1.1029	-0.00064329	1.2197	0.00071147	583.295383772983	3.9622	0.25714	3.9622	3.909	4.1662	0	615	37	0.912521036363781	0.0243451033539596	0.912521036363781	369.824777295726	0	9.86653684390274						295	30	2	NaN	NaN	NaN	0.00083359	1	8459	78.816	53.965	1	136920			10132	718	8544	8770	10132	10132		
IQSSHNFQLESVNK	14	Unmodified	_IQSSHNFQLESVNK_			0	0	0	Q8NBJ4	Q8NBJ4	Q8NBJ4	GOLM1	Golgi membrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.277638	1629.81108	-0.95534	-0.00051997	0.82247	0.00044765	-0.13286	-7.2315E-05	544.278080708814	5.7978	0.097523	5.7978	5.7623	5.8598	0	804	25	0.78414869089473	0.0163727478201636	0.78414869089473	475.098765958106	0	9.91989449836024						221	12	4	NaN	NaN	NaN	7.4642E-06	1	22477	88.734	73.586	1	68872			10133	2288	8545	8771	10133	10133		
IQTQLNLIHPDIFPLLTSFR	20	Unmodified	_IQTQLNLIHPDIFPLLTSFR_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.445877	2365.3158	0.58984	0.00046565	-1.0446	-0.00082462	-0.45472	-0.00035898	789.779416117441	19.889	0.070931	19.889	19.845	19.915	3.5527E-15	546	52	0.959108205975751	0.0343815779756202	0.959108205975751	579.57901564979	0	20.7764264714261						248	9	4	NaN	NaN	NaN	0.0010698	1	36181	48.892	29.886	1	53827			10134	2691	8546	8772	10134	10134		
IQTTVTELQK	10	Unmodified	_IQTTVTELQK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.829703	1159.64485	0.5706	0.00033142	-2.1692	-0.0012599	-1.5986	-0.0009285	580.828246951691	5.8598	0.070955	5.8598	5.8332	5.9041	0	612	19	0.914549654013882	0.012169175881382	0.914549654013882	370.665389044988	0	4.93214588473381						85	9	3	NaN	NaN	NaN	0.026452	1	8344	58.916	34.794	1	37686			10135	1810	8547	8773	10135	10135		
IQTYLQSTK	9	Unmodified	_IQTYLQSTK_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.298039	1080.58152	1.5522	0.0008402	3.4599	0.0018728	5.0121	0.002713	541.298592917818	5.1593	0.28376	5.1593	5.1061	5.3898	-8.8818E-16	630	31	0.902373728295776	0.0202988394656143	0.902373728295776	366.044816269245	0	8.23415479604279						377	33	3	NaN	NaN	NaN	0.0069061	1	6229	42.075	20.8	1	109670			10136	902	8548	8774	10136	10136		
IQVHYYEDGNVQLVSHK	17	Unmodified	_IQVHYYEDGNVQLVSHK_			0	0	0	P47755;P52907	P47755;P52907	P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	508.008899	2028.00649	0.19794	0.00010055	-0.64327	-0.00032678	-0.44533	-0.00022623	508.259174945573	7.7576	0.15971	7.7576	7.7221	7.8818	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	671.962338755593	0	13.1605792802827						281	19	4	NaN	NaN	NaN	0.040387	1	32112	39.82	39.668	1	84932			10137	1226;1099	8549	8775	10137	10137		
IQVHYYEDGNVQLVSHK	17	Unmodified	_IQVHYYEDGNVQLVSHK_			0	0	0	P47755;P52907	P47755;P52907	P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.009439	2028.00649	1.9303	0.0013068	-0.27532	-0.00018639	1.6549	0.0011204	677.34338352222	7.7576	0.1774	7.7576	7.7221	7.8995	0	558	25	0.951016745717027	0.016187402676465	0.951016745717027	575.247025618861	0	9.79136832665392						360	21	5	NaN	NaN	NaN	3.2881E-10	1	32113	111.98	107.42	1	96481			10138	1226;1099	8549	8775	10138	10138		
IQVHYYEDGNVQLVSHK	17	Unmodified	_IQVHYYEDGNVQLVSHK_			0	0	0	P47755;P52907	P47755;P52907	P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.01052	2028.00649	1.9779	0.0020076	-0.28052	-0.00028473	1.6974	0.0017229	1015.51175767997	7.7576	0.04437	7.7576	7.7398	7.7842	0	114	25	1.24744674793813	0.0158607512262854	1.24744674793813	503.035273732489	0	6.39587809892885						74	6	3	NaN	NaN	NaN	0.017462	1	32114	28.277	25.562	1	10394			10139	1226;1099	8549	8775	10139	10139		
IQVLVEPDHFK	11	Unmodified	_IQVLVEPDHFK_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.246839	1323.71869	-2.3132	-0.001023	0.50753	0.00022446	-1.8056	-0.00079853	442.247180072961	9.2834	0.35473	9.2834	9.177	9.5317	0	798	40	0.788241307691771	0.0266001627414024	0.788241307691771	478.506710688289	0	16.1477916127416						880	41	5	NaN	NaN	NaN	0.00018959	1	13105	95.311	59.071	1	599290			10140	745	8550	8776	10140	10140		
IQVLVEPDHFK	11	Unmodified	_IQVLVEPDHFK_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.86662	1323.71869	1.3111	0.00086906	1.5101	0.001001	2.8212	0.0018701	662.867707183054	9.2745	0.2572	9.2745	9.1858	9.443	0	477	43	1.0055473068722	0.0282262646321653	1.0055473068722	406.952290928885	0	11.4233740948048						721	30	4	NaN	NaN	NaN	1.9233E-07	1	13108	143.39	84.478	1	368150			10141	745	8550	8776	10141	10141		
IQVTPPGFQLVFLPFADDK	19	Unmodified	_IQVTPPGFQLVFLPFADDK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.57497	2131.13538	0.46441	0.00049532	0.95539	0.001019	1.4198	0.0015143	1066.57561574779	20.084	0.097542	20.084	20.057	20.155	0	102	118	1.25537494996371	0.0773159965969261	1.25537494996371	506.065736591084	0	31.167562144862						416	12	3	NaN	NaN	NaN	0.028308	1	33762	33.5	29.127	1	176470			10142	673	8551	8777	10142	10142		
IQVTPPGFQLVFLPFADDKR	20	Unmodified	_IQVTPPGFQLVFLPFADDKR_			0	0	1	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.419439	2287.23649	0.81341	0.00062097	0.71147	0.00054315	1.5249	0.0011641	763.754148116675	19.632	0.088678	19.632	19.596	19.685	0	465	31	1.01360860968299	0.0201504747888646	1.01360860968299	612.635072739889	0	12.1791463392169						301	11	5	NaN	NaN	NaN	1.0765E-10	1	35545	105.19	101.75	1	100660			10143	673	8552	8778	10143	10143		
IQVWHAEHR	9	Unmodified	_IQVWHAEHR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.307064	1174.59957	2.1991	0.0012938	-6.4669	-0.0038045	-4.2678	-0.0025107	588.30227861826	3.4124	0.20405	3.4124	3.3681	3.5721	0	588	52	0.93076847747433	0.0344339850202118	0.93076847747433	377.182413922393	0	13.9539465562199						354	24	3	NaN	NaN	NaN	1.9944E-06	1	8724	137.84	79.417	1	108490			10144	710	8553	8779	10144	10144		
IQVWHAEHR	9	Unmodified	_IQVWHAEHR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	392.540468	1174.59957	-0.46983	-0.00018443	0.81509	0.00031996	0.34526	0.00013553	392.540858337435	3.4035	0.28385	3.4035	3.3681	3.6519	0	885	34	0.728786607772777	0.0225958260980745	0.728786607772777	442.99319559674	0	13.7348808328475						421	33	4	NaN	NaN	NaN	0.0055666	1	8726	62.88	44.477	1	186740			10145	710	8553	8779	10145	10145		
IQVWHEEHR	9	Unmodified	_IQVWHEEHR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.875628	1232.60505	-0.18175	-7.4857E-05	0.14399	5.9307E-05	-0.037753	-1.5549E-05	411.875700234505	3.4746	0.31933	3.4746	3.439	3.7583	0	888	31	0.726732155490709	0.0205459583844748	0.726732155490709	441.503413845456	0	12.4820550445401						532	37	4	NaN	NaN	NaN	0.0025769	1	10395	48.157	26.883	1	214790			10146	846	8554	8780	10146	10146		
IQVWHEEHR	9	Unmodified	_IQVWHEEHR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.309803	1232.60505	2.0748	0.0012808	-2.0489	-0.0012648	0.025875	1.5973E-05	617.308645072046	3.4657	0.18634	3.4657	3.439	3.6253	0	558	25	0.951016745717027	0.0161851618294636	0.951016745717027	385.17716508119	0	6.55525234222114						256	22	3	NaN	NaN	NaN	0.053014	1	10396	36.24	17.904	1	62879			10147	846	8554	8780	10147	10147		
IQYQLVDISQDNALRDEMR	19	Unmodified	_IQYQLVDISQDNALRDEMR_			0	0	1	Q9H299	Q9H299	Q9H299	SH3BGRL3	SH3 domain-binding glutamic acid-rich-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.718108	2306.13249	1.3207	0.0010166	-0.33387	-0.00025698	0.98682	0.00075957	770.051982710256	13.416	0.088692	13.416	13.38	13.469	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	610.169077898835	0	12.1802269999744						313	11	5	NaN	NaN	NaN	1.2176E-07	1	35684	93.649	73.759	1	109050			10148	2863	8555	8781	10148	10148		
IRCEEEDVEMSEDAYTVLTR	20	Unmodified	_IRCEEEDVEMSEDAYTVLTR_			0	0	1	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	815.701795	2444.08355	1.2309	0.0010041	-1.1914	-0.00097182	0.039518	3.2235E-05	816.035205788265	12.751	0.10643	12.751	12.724	12.83	0	561	25	0.948993180460448	0.0161896439888687	0.948993180460448	573.358710162937	0	9.78139104324339						203	13	4	NaN	NaN	NaN	8.2578E-16	1	36548	111.03	108.29	1	40534			10149	3325	8556	8782	10149	10149		
IREDLPNLESSEETEQINK	19	Unmodified	_IREDLPNLESSEETEQINK_			0	0	1	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.704521	2243.09173	0.93462	0.00069976	-0.28136	-0.00021065	0.65327	0.0004891	749.038671517611	9.1326	0.1863	9.1326	9.044	9.2303	0	609	52	0.916577990479294	0.0344865119804736	0.916577990479294	554.054589808595	0	20.8464641828012						819	22	5	NaN	NaN	NaN	5.8429E-27	1	35128	236.75	219.48	1	360740			10150	2605	8557	8783	10150	10150		
IREEYPDR	8	Unmodified	_IREEYPDR_			0	0	1	P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;P68371;Q3ZCM7;Q9BVA1;Q13885	P07437;P68371;Q3ZCM7;Q9BVA1	P68371	TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.848967	1076.52507	-0.30145	-0.00010848	2.0837	0.00074982	1.7823	0.00064134	359.849683409881	2.6055	0.133	2.6055	2.5878	2.7208	0	873	22	0.737001551771189	0.0143751500407492	0.737001551771189	448.459219593529	0	8.74715738836835						121	16	2	NaN	NaN	NaN	0.019917	1	6122	58.426	49.663	1	29627			10151	1449;560;2761;1936	8558	8784	10151	10151		
IREIADGLCLEVEGK	15	Unmodified	_IREIADGLCLEVEGK_			0	0	1	P13693	P13693	P13693	TPT1	Translationally-controlled tumor protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.966183	1700.87672	0.24949	0.0001417	-1.1523	-0.00065445	-0.90278	-0.00051275	567.9661069778	10.968	0.10643	10.968	10.942	11.048	0	690	28	0.86171403876517	0.0183260879062385	0.86171403876517	521.9102706105	0	11.0994750788587						170	13	3	NaN	NaN	NaN	0.005672	1	24522	50.314	43.937	1	36683			10152	682	8559	8785	10152	10152		
IREYFGGFGEVESIELPMDNK	21	Unmodified	_IREYFGGFGEVESIELPMDNK_			0	0	1	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	810.72638	2429.15731	0.96129	0.00077934	-1.1821	-0.00095835	-0.2208	-0.00017901	811.059656215706	16.2	0.11526	16.2	16.156	16.271	0	543	49	0.961130371139249	0.0323658503377906	0.961130371139249	580.711873600489	0	19.5553424953713						504	14	5	NaN	NaN	NaN	3.3165E-11	1	36481	125.52	110.57	1	114000			10153	1717	8560	8786	10153	10153		
IRLDTEEQLK	10	Unmodified	_IRLDTEEQLK_			0	0	1	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.845884	1243.67722	2.1782	0.0013567	0.18032	0.00011231	2.3585	0.001469	622.846069686727	5.9663	0.13309	5.9663	5.9219	6.055	0	528	31	0.971237000454584	0.020206269780618	0.971237000454584	393.327897409935	0	8.18305892752079						270	16	3	NaN	NaN	NaN	4.1303E-06	1	10746	108.93	66.094	1	88309			10154	2345	8561	8787	10154	10154		
IRVDVADQAQDK	12	Unmodified	_IRVDVADQAQDK_			0	0	1	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.357148	1356.69974	2.1746	0.0014773	-2.1767	-0.0014787	-0.0020615	-1.4005E-06	679.355933302537	4.6273	0.15076	4.6273	4.5918	4.7425	0	516	46	0.979317271586824	0.0302989286426463	0.979317271586824	396.237267365522	0	12.259116670139						330	18	4	NaN	NaN	NaN	0.0017556	1	14097	80.623	53.245	1	152380			10155	824	8562	8788	10155	10155		
IRYESLTDPSK	11	Unmodified	_IRYESLTDPSK_			0	0	1	P08238;Q58FF7;Q58FF8;P07900;Q58FF6	P08238;Q58FF8;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AB2P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.897987	1307.67213	-2.1951	-0.00095904	0.043234	1.8889E-05	-2.1519	-0.00094015	436.897993680204	5.5139	0.15956	5.5139	5.4342	5.5937	0	840	28	0.759569036796863	0.0184514415745468	0.759569036796863	461.159396596587	0	11.2024783142007						242	19	3	NaN	NaN	NaN	0.048928	1	12591	44.57	37.013	1	59609			10156	579;567;1959;1958	8563	8789	10156	10156		
IRYESLTDPSK	11	Unmodified	_IRYESLTDPSK_			0	0	1	P08238;Q58FF7;Q58FF8;P07900;Q58FF6	P08238;Q58FF8;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AB2P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.843342	1307.67213	2.1243	0.0013911	-0.2509	-0.0001643	1.8734	0.0012268	654.843458091004	5.5139	0.39019	5.5139	5.4076	5.7978	0	522	79	0.975277694896658	0.0525145391716929	0.975277694896658	394.751999322297	0	21.2557094661244						1416	45	5	NaN	NaN	NaN	8.1701E-07	1	12593	132.44	100.3	1	860500			10157	579;567;1959;1958	8563	8789	10157	10157		
ISAILHPSTYLNK	13	Unmodified	_ISAILHPSTYLNK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.911559	1455.80856	1.4268	0.00104	-0.96061	-0.0007002	0.46623	0.00033984	728.910890566219	9.1415	0.070937	9.1415	9.0972	9.1681	0	393	19	1.0618830335572	0.0120486323430495	1.0618830335572	429.348705102565	0	4.871595581875						76	9	2	NaN	NaN	NaN	0.054031	1	17135	34.193	25.719	1	17748			10158	2329	8564	8790	10158	10158		
ISALEQVDDWSNK	13	Unmodified	_ISALEQVDDWSNK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.867545	1503.72054	0.88075	0.00066309	1.2919	0.0009726	2.1726	0.0016357	752.868794394156	11.562	0.15967	11.562	11.527	11.687	0	447	31	1.02569221487577	0.020133781351245	1.02569221487577	414.591330720768	0	8.13820274912058						269	19	4	NaN	NaN	NaN	0.00016397	1	18625	88.734	69.922	1	62772			10159	1668	8565	8791	10159	10159		
ISALNIVGDLLR	12	Unmodified	_ISALNIVGDLLR_			0	0	0	Q9NXR1;Q9GZM8	Q9NXR1	Q9NXR1	NDE1;NDEL1	Nuclear distribution protein nudE homolog 1;Nuclear distribution protein nudE-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.387719	1282.76089	0.30481	0.00019581	0.32767	0.00021049	0.63248	0.0004063	642.387965204824	19.579	0.062085	19.579	19.552	19.614	0	522	25	0.975277694896658	0.0161605431921971	0.975277694896658	394.832132511824	0	6.5424460792172						99	8	2	NaN	NaN	NaN	5.3703E-05	1	11859	96.946	79.476	1	34104			10160	2824	8566	8792	10160	10160		
ISATSIFFESMPYK	14	Unmodified	_ISATSIFFESMPYK_			0	0	0	P34897;P34896	P34897;P34896	P34897	SHMT2;SHMT1	Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.902542	1619.79053	1.3119	0.0010638	0.99235	0.0008047	2.3042	0.0018685	810.902985350926	16.927	0.2838	16.927	16.83	17.114	0	381	115	1.06991323971056	0.0761610027263619	1.06991323971056	432.18300612163	0	30.7646357534759						2224	33	6	NaN	NaN	NaN	1.7725E-08	1	22179	151.66	121.32	1	842840			10161	954;953	8567	8793	10161	10161		
ISATSIFFESMPYK	14	Oxidation (M)	_ISATSIFFESM(Oxidation (M))PYK_	ISATSIFFESM(1)PYK	ISATSIFFESM(67)PYK	0	1	0	P34897;P34896	P34897;P34896	P34897	SHMT2;SHMT1	Serine hydroxymethyltransferase, mitochondrial;Serine hydroxymethyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.899999	1635.78545	2.2231	0.0018205	8.8793	0.0072712	11.102	0.0090917	818.90591949032	14.498	0.26601	14.498	14.4	14.666	-1.7764E-15	321	115	1.10999792833052	0.076140018917821	1.10999792833052	448.337692436085	0	30.7536072927615						1374	31	5	NaN	NaN	NaN	0.00892	1	22662	66.953	61.087	1	369870			10162	954;953	8567	8794	10162	10162	338	
ISAYSALSHPYFQDLER	17	Unmodified	_ISAYSALSHPYFQDLER_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.991797	1995.96904	0.39708	0.00039668	0.69386	0.00069316	1.0909	0.0010898	999.494512239141	13.114	0.053207	13.114	13.079	13.132	0	87	49	1.26527909472281	0.0316867607571956	1.26527909472281	510.28187666073	0	12.7791408329745						139	7	2	NaN	NaN	NaN	0.030212	1	31562	49.097	47.126	1	30643			10163	1500	8568	8795	10163	10163		
ISDDLMQK	8	Unmodified	_ISDDLMQK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.236593	948.458632	-0.22753	-0.00010813	-0.47036	-0.00022353	-0.69789	-0.00033166	475.236678638977	5.5228	0.2838	5.5228	5.3898	5.6736	0	753	52	0.81889964927511	0.034702651471917	0.81889964927511	332.765708312974	0	14.1016697315879						498	33	3	NaN	NaN	NaN	0.018831	1	3211	49.325	33.827	1	178660			10164	191	8569	8796	10164	10164		
ISDEDWDIIHR	11	Unmodified	_ISDEDWDIIHR_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.893124	1397.65754	-1.0306	-0.0004812	-0.79554	-0.00037143	-1.8262	-0.00085263	466.892706126837	10.374	0.14185	10.374	10.33	10.472	0	813	37	0.778007628350577	0.0245693858878535	0.778007628350577	472.036464877102	0	14.9068539125914						439	17	5	NaN	NaN	NaN	0.00019236	1	15367	88.181	81.917	1	267640			10165	1195	8570	8797	10165	10165		
ISDEGIAYLVK	11	Unmodified	_ISDEGIAYLVK_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.332079	1206.6496	0.17635	0.00010657	5.0893	0.0030756	5.2657	0.0031822	604.335386383024	11.864	0.15078	11.864	11.811	11.961	0	594	79	0.926715457081489	0.0526455337827323	0.926715457081489	375.424122221506	0	21.3273698611968						500	18	2	NaN	NaN	NaN	0.071529	1	9652	37.591	11.135	1	176720			10166	964	8571	8798	10166	10166		
ISDSEGFK	8	Unmodified	_ISDSEGFK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.713808	881.413062	-1.2172	-0.00053763	2.6278	0.0011608	1.4107	0.00062312	441.714980483439	3.4746	0.26612	3.4746	3.4301	3.6962	0	789	40	0.794378096728713	0.0265890562583758	0.794378096728713	323.15167857872	0	10.8163835295833						526	31	3	NaN	NaN	NaN	0.015578	1	2023	51.43	36.895	1	237870			10167	814	8572	8799	10167	10167		
ISEACSLAQQSGDHR	15	Unmodified	_ISEACSLAQQSGDHR_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.589887	1657.74783	0.45459	0.00025165	2.0731	0.0011476	2.5277	0.0013993	553.59098796664	4.0686	0.053307	4.0686	4.042	4.0953	0	720	16	0.841341816837976	0.0101938971408684	0.841341816837976	509.678520696801	0	6.17538592628125						70	7	3	NaN	NaN	NaN	0.022466	1	23254	32.759	20.801	1	13283			10168	1227	8573	8800	10168	10168		
ISELDAFLK	9	Unmodified	_ISELDAFLK_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.289682	1034.56481	0.15898	8.2396E-05	-1.6758	-0.00086854	-1.5168	-0.00078614	518.288777790392	13.655	0.24826	13.655	13.593	13.841	0	675	37	0.871889544407995	0.0244093537126775	0.871889544407995	353.876993590037	0	9.90711353601921						471	29	4	NaN	NaN	NaN	0.0076442	1	5110	67.464	38.362	1	254400			10169	1560	8574	8801	10169	10169		
ISELGSQLSDEAVEDGLFHEFK	22	Unmodified	_ISELGSQLSDEAVEDGLFHEFK_			0	0	0	Q96T37	Q96T37	Q96T37	RBM15	Putative RNA-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.395576	2449.1649	0.69295	0.00056641	0.52219	0.00042684	1.2151	0.00099325	817.72992308464	16.377	0.088649	16.377	16.351	16.44	0	408	34	1.0518390438467	0.0221028774104899	1.0518390438467	635.488233252365	0	13.3538668273975						260	11	4	NaN	NaN	NaN	2.3709E-06	1	36574	52.149	45.762	1	71369			10170	2628	8575	8802	10170	10170		
ISELTSELTDER	12	Unmodified	_ISELTSELTDER_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.846278	1391.678	1.0001	0.00069692	-0.93911	-0.00065441	0.060994	4.2503E-05	696.846231450504	9.2568	0.15967	9.2568	9.177	9.3366	0	492	43	0.995464410099171	0.0282418742669083	0.995464410099171	402.668370379837	0	11.4239237205831						447	19	3	NaN	NaN	NaN	0.0048085	1	15194	42.061	34.06	1	113630			10171	2418	8576	8803	10171	10171		
ISEQFTAMFR	10	Unmodified	_ISEQFTAMFR_			0	0	0	P04350;P07437;P68371;Q9BVA1;Q13885;Q13509	P04350;P07437;P68371;Q9BVA1;Q13509	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.302798	1228.59104	1.8342	0.0011286	-2.0274	-0.0012475	-0.1932	-0.00011888	615.301669928953	12.946	0.52323	12.946	12.875	13.398	0	603	73	0.920633820089869	0.0486565002828631	0.920633820089869	372.885080479932	0	19.7073827051847						1810	60	6	NaN	NaN	NaN	1.3541E-07	1	10260	131.22	95.014	1	2913100			10172	1449;560;512;2761;1675	8577	8804	10172	10172		
ISEQFTAMFR	10	Oxidation (M)	_ISEQFTAM(Oxidation (M))FR_	ISEQFTAM(1)FR	ISEQFTAM(120)FR	0	1	0	P04350;P07437;P68371;Q9BVA1;Q13885;Q13509	P04350;P07437;P68371;Q9BVA1;Q13509	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.300255	1244.58596	1.5489	0.00096541	0.026979	1.6816E-05	1.5759	0.00098223	623.300467147889	9.6026	0.3458	9.6026	9.514	9.8598	0	585	52	0.932794566565362	0.0344435264465663	0.932794566565362	377.756597866014	0	13.9486976396868						950	40	5	NaN	NaN	NaN	2.9696E-05	1	10758	115.86	67.703	1	647460			10173	1449;560;512;2761;1675	8577	8805	10173	10173	88	
ISFCLDIHNMSVK	13	Unmodified	_ISFCLDIHNMSVK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.926783	1562.75852	-0.61869	-0.00032291	-1.6791	-0.00087638	-2.2978	-0.0011993	521.925918066824	13.558	0.08868	13.558	13.522	13.611	0	759	22	0.814815566123307	0.0142972743793067	0.814815566123307	493.857435833778	0	8.66553801613031						155	11	4	NaN	NaN	NaN	0.015508	1	20439	28.328	27.967	1	34296			10174	191	8578	8806	10174	10174		
ISFCLDIHNMSVK	13	Unmodified	_ISFCLDIHNMSVK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.386536	1562.75852	2.2111	0.0017299	0.75545	0.00059106	2.9665	0.002321	782.387096144987	13.558	0.10643	13.558	13.513	13.62	0	363	28	1.08195024817156	0.0180492926905949	1.08195024817156	437.180476856614	0	7.29312498308849						227	13	4	NaN	NaN	NaN	0.00028347	1	20443	63.212	50.037	1	53197			10175	191	8578	8806	10175	10175		
ISFEEFCAVVGGLDIHK	17	Unmodified	_ISFEEFCAVVGGLDIHK_			0	0	0	P63098	P63098	P63098	PPP3R1	Calcineurin subunit B type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.988988	1919.94513	0.15184	9.7327E-05	-0.63259	-0.00040548	-0.48075	-0.00030816	641.323271341995	17.885	0.12411	17.885	17.849	17.974	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	566.89200819499	0	9.80461013086983						259	15	4	NaN	NaN	NaN	0.0021899	1	30062	57.042	44.359	1	64604			10176	1426	8579	8807	10176	10176		
ISFGTDYGCCIVELGK	16	Unmodified	_ISFGTDYGCCIVELGK_			0	0	0	Q06265	Q06265	Q06265	EXOSC9	Exosome complex component RRP45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.92368	1817.83281	0.61698	0.00056141	5.6784	0.0051669	6.2954	0.0057283	910.429797767974	14.834	0.079815	14.834	14.799	14.879	0	288	34	1.13199748998575	0.0219844292788041	1.13199748998575	456.838776153079	0	8.87222794661767						195	10	3	NaN	NaN	NaN	0.02761	1	27659	36.46	27.198	1	78717			10177	1559	8580	8808	10177	10177		
ISFSNIISDMK	11	Unmodified	_ISFSNIISDMK_			0	0	0	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.823563	1253.63257	0.31341	0.00019677	2.0845	0.0013087	2.3979	0.0015055	627.825002578414	15.642	0.070922	15.642	15.597	15.668	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	388.382149250282	0	6.55131305022951						166	9	4	NaN	NaN	NaN	0.011547	1	11028	58.889	31.153	1	49750			10178	2425	8581	8809	10178	10178		
ISGATFSVGSGSVYAYGVMDR	21	Unmodified	_ISGATFSVGSGSVYAYGVMDR_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1062.50695	2122.99935	1.1322	0.001203	-0.33496	-0.00035589	0.79726	0.0008471	1062.5066380778	14.311	0.14187	14.311	14.267	14.409	-1.7764E-15	141	79	1.2295923935727	0.0516181928902155	1.2295923935727	495.68459693012	0	20.8088007625876						646	17	4	NaN	NaN	NaN	0.00035714	1	33653	46.823	44.107	1	122090			10179	875	8582	8810	10179	10179		
ISGETIFVTAPHEATAGIIGVNR	23	Unmodified	_ISGETIFVTAPHEATAGIIGVNR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.08853	2352.24376	2.03	0.0015938	0.51706	0.00040594	2.5471	0.0019997	785.422609462394	13.983	0.2394	13.983	13.895	14.134	0	348	229	1.09197348738011	0.152848856205045	1.09197348738011	659.889509899006	0	92.3679539617434						2539	28	5	NaN	NaN	NaN	2.5451E-09	1	36071	102.55	93.42	1	701480			10180	1503	8583	8811	10180	10180		
ISGGSVVEMQGDEMTR	16	Unmodified	_ISGGSVVEMQGDEMTR_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.387461	1694.76037	2.2989	0.0019503	0.0073762	6.2579E-06	2.3063	0.0019566	848.387935604609	8.3963	0.22168	8.3963	8.352	8.5736	0	375	64	1.07392668217569	0.0421382628414091	1.07392668217569	433.641452060489	0	17.0150325800975						598	26	2	NaN	NaN	NaN	0.00011425	1	24328	69.327	67.739	1	329420			10181	367	8584	8812	10181	10181		
ISGGSVVEMQGDEMTR	16	Oxidation (M)	_ISGGSVVEMQGDEM(Oxidation (M))TR_	ISGGSVVEM(0.003)QGDEM(0.997)TR	ISGGSVVEM(-26)QGDEM(26)TR	0	1	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.384919	1710.75528	2.3858	0.0020431	-1.3443	-0.0011512	1.0415	0.0008919	856.384136929385	6.5161	0.1064	6.5161	6.4806	6.587	0	405	58	1.05384839605172	0.0381777082454866	1.05384839605172	425.50176178989	0	15.4146290684849						394	13	4	NaN	NaN	NaN	1.1239E-05	1	24769	96.313	93.228	2	80396			10182	367	8584	8813	10182	10182	60	
ISGLGLTPEQK	11	Unmodified	_ISGLGLTPEQK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.824421	1141.63429	2.2161	0.0012672	-1.5977	-0.00091362	0.61836	0.00035359	571.823810306589	7.7398	0.23951	7.7398	7.6688	7.9083	0	594	49	0.926715457081489	0.032415189981154	0.926715457081489	375.665799912979	0	13.140255922731						711	28	4	NaN	NaN	NaN	5.6697E-05	1	7842	85.716	53.576	1	192730			10183	458	8585	8814	10183	10183		
ISGLIYEETR	10	Unmodified	_ISGLIYEETR_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.814053	1179.61355	1.3585	0.0008026	-0.98945	-0.00058458	0.36902	0.00021802	590.813613978328	8.9021	0.3194	8.9021	8.7778	9.0972	0	594	49	0.926715457081489	0.0324196809968852	0.926715457081489	375.521424618241	0	13.1370257187247						501	37	3	NaN	NaN	NaN	0.0084362	1	8874	53.517	43.429	1	295560			10184	1397	8586	8815	10184	10184		
ISGLIYEETRGVLK	14	Unmodified	_ISGLIYEETRGVLK_			0	0	1	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.634762	1576.88246	-0.46492	-0.00024484	-0.31601	-0.00016642	-0.78093	-0.00041127	526.634513244456	11.42	0.1419	11.42	11.376	11.518	0	720	37	0.841341816837976	0.024467056718703	0.841341816837976	509.894851508947	0	14.8282493545029						376	17	4	NaN	NaN	NaN	0.0064852	1	20887	48.701	37.913	1	147480			10185	1397	8587	8816	10185	10185		
ISGLIYEETRGVLK	14	Unmodified	_ISGLIYEETRGVLK_			0	0	1	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.448505	1576.88246	2.098	0.0016563	-0.47881	-0.00037799	1.6192	0.0012783	789.447798134316	11.429	0.079822	11.429	11.394	11.474	0	324	28	1.1079963157843	0.0180169954366338	1.1079963157843	447.669620186683	0	7.27950209682228						181	10	3	NaN	NaN	NaN	0.0020456	1	20888	69.641	48.49	1	43785			10186	1397	8587	8816	10186	10186		
ISGSILNELIGLVR	14	Unmodified	_ISGSILNELIGLVR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.445766	1482.87698	0.4182	0.00031049	-0.92598	-0.00068749	-0.50778	-0.000377	742.445472799528	20.075	0.044334	20.075	20.066	20.111	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	412.202540616973	0	8.14149464973957						105	6	3	NaN	NaN	NaN	6.8496E-06	1	18009	138.71	137.66	1	92869			10187	2175	8588	8817	10187	10187		
ISGTTALQEALK	12	Unmodified	_ISGTTALQEALK_			0	0	0	P30622;Q9UDT6	P30622	P30622	CLIP1;CLIP2	CAP-Gly domain-containing linker protein 1;CAP-Gly domain-containing linker protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.34826	1230.68197	1.041	0.00064164	1.0894	0.00067146	2.1304	0.0013131	616.348913236796	10.241	0.11528	10.241	10.197	10.312	0	489	31	0.997481546940468	0.0201699767195437	0.997481546940468	404.003138664328	0	8.1693079200075						254	14	3	NaN	NaN	NaN	0.00052028	1	10339	72.922	57.34	1	90631			10188	914	8589	8818	10188	10188		
ISGWTQALPDMVVSHLFGK	19	Unmodified	_ISGWTQALPDMVVSHLFGK_			0	0	0	Q92597	Q92597	Q92597	NDRG1	Protein NDRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.031187	2085.07173	0.34317	0.00023885	0.30677	0.00021352	0.64994	0.00045238	696.365669747037	19.641	0.10641	19.641	19.596	19.703	0	534	40	0.967195187796614	0.0262808772147128	0.967195187796614	584.924200615505	0	15.8937113110645						351	13	5	NaN	NaN	NaN	4.8767E-11	1	33105	133.13	112.52	1	104400			10189	2414	8590	8819	10189	10189		
ISHGEVLEWQK	11	Unmodified	_ISHGEVLEWQK_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.56646	1324.67755	-1.9401	-0.00085861	0.20154	8.9196E-05	-1.7385	-0.00076941	442.566405106265	6.6136	0.11529	6.6136	6.5781	6.6934	0	804	28	0.78414869089473	0.018420624064141	0.78414869089473	476.018709758018	0	11.1822691305456						151	14	2	NaN	NaN	NaN	0.02002	1	13135	40.502	33.812	1	56013			10190	2786	8591	8820	10190	10190		
ISHLNDLSIPVDEEDPSEDIFTVLTAEEK	29	Unmodified	_ISHLNDLSIPVDEEDPSEDIFTVLTAEEK_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1085.86455	3254.57181	0.80972	0.00087925	1.3213	0.0014347	2.131	0.002314	1086.20088323843	19.224	0.062056	19.224	19.197	19.259	0	327	49	1.10599442759226	0.0320456641041635	1.10599442759226	667.273573578985	0	19.3339353897543						230	8	4	NaN	NaN	NaN	5.9206E-05	1	38511	78.177	76.151	1	44103			10191	2601	8592	8821	10191	10191		
ISHLPLVEELR	11	Unmodified	_ISHLPLVEELR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	435.922355	1304.74524	-2.4318	-0.0010601	0.19135	8.3412E-05	-2.2404	-0.00097666	435.922416425491	11.11	0.3813	11.11	10.888	11.27	0	801	37	0.78619514174348	0.024552286497425	0.78619514174348	477.336159003228	0	14.9068513771758						457	44	3	NaN	NaN	NaN	0.010428	1	12509	49.16	45.267	1	107870			10192	1144	8593	8822	10192	10192		
ISHVVVEDTVVSDK	14	Unmodified	_ISHVVVEDTVVSDK_			0	0	0	Q7Z5K2	Q7Z5K2	Q7Z5K2	WAPAL	Wings apart-like protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.90667	1525.79879	2.0953	0.0016006	-2.695	-0.0020588	-0.59973	-0.00045814	763.904992805124	6.3565	0.06205	6.3565	6.3299	6.3919	0	411	25	1.04982941439551	0.0160781459716195	1.04982941439551	424.29175093798	0	6.49803159693602						129	8	3	NaN	NaN	NaN	0.00016413	1	19298	72.846	65.289	1	40702			10193	2145	8594	8823	10193	10193		
ISIEMHGTLEDQLSHLR	17	Unmodified	_ISIEMHGTLEDQLSHLR_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.33868	1977.99421	1.2802	0.00084535	-1.7686	-0.0011678	-0.48838	-0.00032249	660.337606081568	12.946	0.14189	12.946	12.893	13.034	0	561	31	0.948993180460448	0.0202398580816178	0.948993180460448	574.121597444825	0	12.2447030106548						363	17	5	NaN	NaN	NaN	7.0695E-05	1	31252	72.031	63.657	1	84146			10194	671	8595	8824	10194	10194		
ISIEMNGTLEDQLSHLK	17	Unmodified	_ISIEMNGTLEDQLSHLK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.331302	1926.97208	0.138	8.8781E-05	0.19045	0.00012252	0.32845	0.0002113	643.33127975145	14.586	0.11526	14.586	14.551	14.666	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	549.702916687067	0	9.82339390162997						230	14	4	NaN	NaN	NaN	5.2372E-05	1	30217	55.782	42.437	1	47967			10195	221	8596	8825	10195	10195		
ISIMHEDWCWK	11	Unmodified	_ISIMHEDWCWK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.228573	1503.66389	-1.9757	-0.00099228	-0.39218	-0.00019697	-2.3679	-0.0011892	502.228422940203	12.378	0.079794	12.378	12.343	12.423	0	831	31	0.76571780291124	0.0204916061947072	0.76571780291124	464.259356673879	0	12.4241853500068						191	10	3	NaN	NaN	NaN	0.004007	1	18612	34.953	31.06	1	43489			10196	1452;1818	8597	8826	10196	10196		
ISIPDVDLDLK	11	Unmodified	_ISIPDVDLDLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.345186	1226.67582	0.46698	0.00028689	-1.025	-0.00062972	-0.55805	-0.00034283	614.344396110428	15.216	0.13302	15.216	15.171	15.304	0	603	49	0.920633820089869	0.0324331596454394	0.920633820089869	372.891544624842	0	13.1366573042813						302	16	4	NaN	NaN	NaN	0.029124	1	10202	35.33	24.628	1	130930			10197	1584	8598	8827	10197	10197		
ISIPDVGLHLK	11	Unmodified	_ISIPDVGLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.358431	1190.70231	1.2532	0.00074736	0.20749	0.00012374	1.4607	0.00087109	596.358605694261	12.777	0.19508	12.777	12.671	12.866	0	510	31	0.983355730988811	0.0201895069753196	0.983355730988811	398.430156669361	0	8.18026292394211						360	23	3	NaN	NaN	NaN	0.006683	1	9195	49.16	38.458	1	109150			10198	1584	8599	8828	10198	10198		
ISITEGIER	9	Unmodified	_ISITEGIER_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.282389	1016.55022	0.41228	0.00020997	-1.2786	-0.00065118	-0.86633	-0.00044121	509.282574715676	8.0325	0.20409	8.0325	7.9615	8.1656	0	699	52	0.85560534332665	0.034615952502899	0.85560534332665	347.348461934804	0	14.05297191523						397	24	4	NaN	NaN	NaN	0.012265	1	4667	48.157	24.582	1	198700			10199	718	8600	8829	10199	10199		
ISIVEALTLLNNHK	14	Unmodified	_ISIVEALTLLNNHK_			0	0	0	Q9P032	Q9P032	Q9P032	NDUFAF4	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.306757	1563.89844	-0.13793	-7.2044E-05	-2.0255	-0.0010579	-2.1634	-0.00113	522.639909842405	17.779	0.133	17.779	17.734	17.867	0	684	31	0.86578508874114	0.0203524260142245	0.86578508874114	524.746567587334	0	12.3354696586057						336	16	4	NaN	NaN	NaN	0.036479	1	20472	47.334	41.838	1	140770			10200	3142	8601	8830	10200	10200		
ISLDQIDLLSTK	12	Unmodified	_ISLDQIDLLSTK_			0	0	0	P49643	P49643	P49643	PRIM2	DNA primase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.3823	1344.75005	1.327	0.00089361	-2.2542	-0.0015179	-0.92711	-0.0006243	673.380981503846	15.544	0.12414	15.544	15.5	15.624	-3.5527E-15	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	405.254901435541	0	8.15936138060232						271	15	4	NaN	NaN	NaN	9.8487E-07	1	13757	103.69	75.59	1	89196			10201	1141	8602	8831	10201	10201		
ISLGLPVGAVINCADNTGAK	20	Unmodified	_ISLGLPVGAVINCADNTGAK_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.350697	1969.03026	-0.11733	-7.7128E-05	-0.29326	-0.00019278	-0.4106	-0.00026991	657.685041445191	15.872	0.11528	15.872	15.81	15.925	0	657	148	0.884090832094921	0.099347456046589	0.884090832094921	534.873939209767	0	60.1050969391831						1003	14	3	NaN	NaN	NaN	0.00047589	1	31098	102.26	97.165	1	229100			10202	1400	8603	8832	10202	10202		
ISLGLPVGAVINCADNTGAK	20	Unmodified	_ISLGLPVGAVINCADNTGAK_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.522407	1969.03026	1.7451	0.0017198	0.9952	0.00098079	2.7403	0.0027006	986.025300250277	15.872	0.30151	15.872	15.73	16.032	0	192	172	1.1958073123591	0.113248705323123	1.1958073123591	482.309756536513	0	45.6770542611201						2918	35	7	NaN	NaN	NaN	2.4769E-05	1	31099	85.513	76.357	1	3848600			10203	1400	8603	8832	10203	10203		
ISLGMPVGPNAHK	13	Unmodified	_ISLGMPVGPNAHK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.90794	1319.70199	-1.8066	-0.00079653	-0.70067	-0.00030893	-2.5072	-0.0011055	440.907492105286	8.3076	0.10638	8.3076	8.2544	8.3608	0	855	46	0.749315378969369	0.0307781376154836	0.749315378969369	454.890774189094	0	18.6846436640108						307	13	3	NaN	NaN	NaN	0.054643	1	12977	36.24	16.984	1	66846			10204	1667	8604	8833	10204	10204		
ISLGMPVGPNAHK	13	Unmodified	_ISLGMPVGPNAHK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.858272	1319.70199	1.6301	0.0010773	1.7483	0.0011554	3.3784	0.0022327	660.859152318534	8.2987	0.12426	8.2987	8.2454	8.3697	0	465	37	1.01360860968299	0.024180571015918	1.01360860968299	410.227655964005	0	9.78636021139715						266	15	3	NaN	NaN	NaN	0.046919	1	12978	31.425	17.43	1	70456			10205	1667	8604	8833	10205	10205		
ISLIQIFR	8	Unmodified	_ISLIQIFR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.310752	988.606951	-1.0749	-0.0005324	-2.8675	-0.0014203	-3.9424	-0.0019527	495.309588951879	16.546	0.1596	16.546	16.493	16.652	0	708	40	0.849494101904619	0.0264967721372047	0.849494101904619	344.997668587593	0	10.7609041568822						357	19	3	NaN	NaN	NaN	0.0015027	1	4030	97.033	61.4	1	103410			10206	2064	8605	8834	10206	10206		
ISLNSLCYGDMDK	13	Unmodified	_ISLNSLCYGDMDK_			0	0	0	O75131	O75131	O75131	CPNE3	Copine-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.344534	1514.67452	1.2085	0.00091643	1.8369	0.001393	3.0454	0.0023095	758.345751396839	12.059	0.12416	12.059	12.024	12.148	0	414	28	1.04781950764076	0.0180916587638704	1.04781950764076	423.507385642866	0	7.31228140835157						149	15	2	NaN	NaN	NaN	0.006968	1	18950	61.577	46.815	1	89266			10207	304	8606	8835	10207	10207		
ISLPEAMQLLQDR	13	Unmodified	_ISLPEAMQLLQDR_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.405783	1512.79701	1.1903	0.00090156	-1.7432	-0.0013203	-0.55292	-0.00041878	757.405050218321	17.637	0.28375	17.637	17.486	17.77	0	426	40	1.03977710643793	0.0261468289709272	1.03977710643793	420.261546978112	0	10.568136886124						608	33	4	NaN	NaN	NaN	0.0022946	1	18901	60	56.017	1	210570			10208	1923	8607	8836	10208	10208		
ISLPGQMAGTPITPLK	16	Unmodified	_ISLPGQMAGTPITPLK_			0	0	0	Q9H8Y8	Q9H8Y8	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.460558	1622.90656	2.5025	0.0020332	-0.45816	-0.00037224	2.0444	0.001661	812.460091415593	13.93	0.1064	13.93	13.886	13.992	0	360	49	1.08395544855938	0.0320765843324038	1.08395544855938	437.848122322724	0	12.9568722027602						440	13	4	NaN	NaN	NaN	0.058129	1	22285	24.922	21.186	1	121920			10209	2928	8608	8837	10209	10209		
ISLPLPNFSSLNLR	14	Unmodified	_ISLPLPNFSSLNLR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.951215	1569.88788	0.43901	0.00034504	-0.93922	-0.00073818	-0.50021	-0.00039314	785.951470345002	18.612	0.062061	18.612	18.568	18.63	0	399	7	1.0578662689527	0.00401787290097566	1.0578662689527	427.43189118124	0	1.62342543948398						23	8	2	NaN	NaN	NaN	0.00031263	1	20668	60	47.982	1	4958.1			10210	588	8609	8838	10210	10210		
ISLPLPNFSSLNLR	14	Unmodified	_ISLPLPNFSSLNLR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.951215	1569.88788	1.4296	0.0011236	-1.1879	-0.00093363	0.24166	0.00018993	785.95025183303	18.772	0.45219	18.772	18.541	18.993	0	393	67	1.0618830335572	0.0441844358674923	1.0618830335572	429.05486974658	0	17.8527641716312						1786	52	5	NaN	NaN	NaN	5.1095E-06	1	20669	119.55	90.233	1	1480200			10211	588	8609	8838	10211	10211		
ISLPVILMDETLK	13	Unmodified	_ISLPVILMDETLK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.425653	1470.83675	0.5089	0.00037477	-1.3052	-0.00096115	-0.79626	-0.00058639	736.424355967063	18.967	0.15073	18.967	18.878	19.029	0	447	37	1.02569221487577	0.0241572026210712	1.02569221487577	414.675864755723	0	9.76648622431543						337	18	3	NaN	NaN	NaN	0.0098049	1	17623	45.939	39.563	1	79375			10212	730	8610	8839	10212	10212		
ISLPVILMDETLK	13	Unmodified	_ISLPVILMDETLK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.425653	1470.83675	0.77452	0.00057038	-0.53439	-0.00039354	0.24014	0.00017684	736.424996758841	18.967	0.14187	18.967	18.887	19.029	0	399	34	1.0578662689527	0.0220998283327687	1.0578662689527	427.683471080595	0	8.93471279786729						367	17	4	NaN	NaN	NaN	0.0029134	1	17624	64.906	54.818	1	91496			10213	730	8610	8839	10213	10213		
ISMAAYVSGELEHVTR	16	Unmodified	_ISMAAYVSGELEHVTR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.297933	1761.87197	0.47022	0.00027663	-0.37001	-0.00021768	0.1002	5.8949E-05	588.297920242499	14.604	0.14187	14.604	14.56	14.701	0	609	34	0.916577990479294	0.0223147973671984	0.916577990479294	554.984272283944	0	13.5115197033285						273	17	4	NaN	NaN	NaN	0.033148	1	26194	15.528	14.647	1	61739			10214	744	8611	8840	10214	10214		
ISMAAYVSGELEHVTR	16	Unmodified	_ISMAAYVSGELEHVTR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.943261	1761.87197	1.8433	0.0016257	-0.0525	-4.6302E-05	1.7908	0.0015794	882.444275674617	14.595	0.07982	14.595	14.568	14.648	1.7764E-15	189	31	1.1977968526266	0.0198967707037836	1.1977968526266	483.509594381609	0	8.03164535905603						174	10	3	NaN	NaN	NaN	1.7107E-05	1	26195	76.563	73.058	1	36366			10215	744	8611	8840	10215	10215		
ISMFCHVEPEQVICVHDVSSIYR	23	Unmodified	_ISMFCHVEPEQVICVHDVSSIYR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	702.084383	2804.30843	0.70674	0.00049619	-0.077201	-5.4202E-05	0.62954	0.00044199	702.335114478788	14.107	0.14186	14.107	14.036	14.178	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	760.663061951133	0	14.6664791392212						430	17	6	NaN	NaN	NaN	0.010596	1	37906	29.664	29.63	1	110920			10216	741	8612	8841	10216	10216		
ISMPDFDLHLK	11	Unmodified	_ISMPDFDLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.228679	1314.66421	-2.9459	-0.0012939	0.1917	8.4201E-05	-2.7542	-0.0012097	439.228948538421	14.054	0.25716	14.054	14.001	14.258	0	801	34	0.78619514174348	0.0225109626091257	0.78619514174348	477.298480217834	0	13.6663884970709						615	30	5	NaN	NaN	NaN	0.067875	1	12794	9.5142	8.2575	1	320970			10217	1584	8613	8842	10217	10217		
ISMPDFDLHLK	11	Unmodified	_ISMPDFDLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.339381	1314.66421	1.1127	0.00073252	0.7399	0.00048711	1.8526	0.0012196	658.340276078057	14.054	0.25714	14.054	13.957	14.214	0	486	85	0.999498404980629	0.056522848773085	0.999498404980629	404.533039575066	0	22.8768347259754						1217	30	5	NaN	NaN	NaN	5.2252E-05	1	12796	107.08	95.723	1	751810			10218	1584	8613	8842	10218	10218		
ISMPDFDLNLK	11	Unmodified	_ISMPDFDLNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.831388	1291.64822	0.74518	0.000482	-1.0632	-0.00068768	-0.31798	-0.00020568	646.831025595862	15.837	0.20398	15.837	15.748	15.952	0	564	67	0.946969335010767	0.0445030563663786	0.946969335010767	383.343659754988	0	18.0153293956199						868	24	4	NaN	NaN	NaN	0.00033196	1	12129	67.881	10.848	1	322500			10219	1584	8614	8843	10219	10219		
ISMPDIDFNLK	11	Unmodified	_ISMPDIDFNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.831388	1291.64822	0.42881	0.00027737	-0.18214	-0.00011781	0.24667	0.00015956	646.831464873726	15.677	0.15073	15.677	15.624	15.775	0	543	67	0.961130371139249	0.0445030563663786	0.961130371139249	389.076200160082	0	18.0153292274144						664	18	4	NaN	NaN	NaN	0.0063502	1	12130	37.749	9.1028	1	213050			10220	1584	8615	8844	10220	10220		
ISMPDIDLNLTGPK	14	Unmodified	_ISMPDIDLNLTGPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.400166	1512.78578	1.5108	0.0011442	-1.8314	-0.0013871	-0.32064	-0.00024286	757.399728925467	15.775	0.21283	15.775	15.712	15.925	0	429	70	1.03776581230406	0.046227884403949	1.03776581230406	419.44864210915	0	18.6845848176138						1164	25	6	NaN	NaN	NaN	0.0032369	1	18898	50.116	38.761	1	346950			10221	1584	8616	8845	10221	10221		
ISMPDLDLHLK	11	Unmodified	_ISMPDLDLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.347206	1280.67986	1.7668	0.0011331	-0.060717	-3.8941E-05	1.7061	0.0010942	641.347310401855	13.549	0.23944	13.549	13.416	13.655	0	486	40	0.999498404980629	0.0262191597817407	0.999498404980629	404.644668297892	0	10.6147675274555						584	28	4	NaN	NaN	NaN	0.0063502	1	11785	44.57	35.593	1	182340			10222	1584	8617	8846	10222	10222		
ISMPDLDLNLK	11	Unmodified	_ISMPDLDLNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.839213	1257.66387	1.1054	0.00069623	0.37672	0.00023727	1.4821	0.0009335	629.839765893265	15.074	0.23942	15.074	14.976	15.216	0	570	73	0.942920803299286	0.0485555152659193	0.942920803299286	381.813881265698	0	19.6614282723086						1278	28	5	NaN	NaN	NaN	5.1764E-05	1	11151	117.3	0	1	868190			10223	1584	8618	8847	10223	10223		
ISMPDVDFNLK	11	Unmodified	_ISMPDVDFNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.823563	1277.63257	1.1367	0.00072729	0.78426	0.00050179	1.921	0.0012291	639.824176608231	14.56	0.15076	14.56	14.498	14.648	0	534	55	0.967195187796614	0.0363914316100816	0.967195187796614	391.576744793641	0	14.7333635527276						534	18	4	NaN	NaN	NaN	0.03952	1	11692	33.723	21.766	1	130860			10224	1584	8619	8848	10224	10224		
ISMPDVDLHLK	11	Unmodified	_ISMPDVDLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.228679	1266.66421	-1.4989	-0.00063439	-0.53034	-0.00022446	-2.0293	-0.00085885	423.228683275603	12.139	0.40792	12.139	11.997	12.405	0	816	73	0.775960037304758	0.0491798832676353	0.775960037304758	471.270089873137	0	29.8688165539975						1374	47	5	NaN	NaN	NaN	0.058001	1	11419	20.183	9.4808	1	1406200			10225	1584	8620	8849	10225	10225		
ISMPDVDLHLK	11	Unmodified	_ISMPDVDLHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.339381	1266.66421	1.2298	0.00078012	0.43325	0.00027483	1.6631	0.0010549	634.339976971218	12.139	0.28379	12.139	12.024	12.307	0	486	64	0.999498404980629	0.0423716092284074	0.999498404980629	404.692434432439	0	17.1560750912819						1219	33	5	NaN	NaN	NaN	0.0007849	1	11420	90.263	69.174	1	638600			10226	1584	8620	8849	10226	10226		
ISMPDVDLHMK	11	Unmodified	_ISMPDVDLHMK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	429.214153	1284.62063	-1.277	-0.00054812	-1.2695	-0.0005449	-2.5466	-0.001093	429.213939478955	11.119	0.17732	11.119	11.021	11.199	0	816	28	0.775960037304758	0.0184283211995636	0.775960037304758	471.199153940854	0	11.190536806439						420	21	4	NaN	NaN	NaN	0.071416	1	11894	12.596	10.228	1	150040			10227	1584	8621	8850	10227	10227		
ISMPDVGLNLK	11	Unmodified	_ISMPDVGLNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.828649	1185.64274	0.70279	0.00041733	0.28821	0.00017115	0.991	0.00058848	593.828657146751	13.682	0.19506	13.682	13.602	13.797	0	567	46	0.944945209309785	0.0303618936649183	0.944945209309785	382.885926699942	0	12.3024506370572						396	23	2	NaN	NaN	NaN	0.0045901	1	9036	69.915	46.862	1	182180			10228	1584	8622	8851	10228	10228		
ISMPDVNLNLK	11	Unmodified	_ISMPDVNLNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.339381	1242.66421	1.7585	0.0010944	4.6744	0.002909	6.4329	0.0040034	622.343183482128	13.549	0.29262	13.549	13.398	13.691	0	549	70	0.957085760909907	0.0465227050214623	0.957085760909907	387.600431591349	0	18.8407573089088						988	34	4	NaN	NaN	NaN	0.0045634	1	10711	74.269	39.488	1	614830			10229	1584	8623	8852	10229	10229		
ISMQELEELRK	11	Unmodified	_ISMQELEELRK_			0	0	1	Q9BSJ2	Q9BSJ2	Q9BSJ2	TUBGCP2	Gamma-tubulin complex component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	459.24651	1374.7177	-1.4674	-0.0006739	-1.6899	-0.00077607	-3.1573	-0.00145	459.245690881498	10.099	0.088661	10.099	10.073	10.161	0	837	25	0.761618911097395	0.0163978531356664	0.761618911097395	462.168453891702	0	9.95060695109896						150	11	3	NaN	NaN	NaN	0.00054079	1	14647	69.915	57.319	1	48046			10230	2725	8624	8853	10230	10230		
ISMSEVDLNVAAPK	14	Unmodified	_ISMSEVDLNVAAPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.384516	1472.75448	1.5364	0.0011329	1.6256	0.0011987	3.162	0.0023316	737.385530834608	12.139	0.11529	12.139	12.086	12.201	1.7764E-15	318	106	1.11199926528787	0.070153106799693	1.11199926528787	449.563369704737	0	28.3617697175022						721	14	4	NaN	NaN	NaN	0.0017618	1	17672	64.266	60.019	1	190030			10231	1584	8625	8854	10231	10231		
ISNAQLQTELVEILK	15	Unmodified	_ISNAQLQTELVEILK_			0	0	0	Q93034	Q93034	Q93034	CUL5	Cullin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.985452	1697.95635	0.63302	0.00053806	1.1087	0.00094239	1.7417	0.0014804	849.987034545984	18.027	0.070945	18.027	17.991	18.062	0	309	25	1.11800162319566	0.0160029839487266	1.11800162319566	451.431600661982	0	6.46175507213673						178	9	4	NaN	NaN	NaN	8.8423E-12	1	24448	137.58	92.98	1	33903			10232	2453	8626	8855	10232	10232		
ISNLIVLHLR	10	Unmodified	_ISNLIVLHLR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	393.252036	1176.73428	-2.6735	-0.0010514	0.14747	5.7991E-05	-2.526	-0.00099336	393.252172067979	11.846	0.13304	11.846	11.811	11.944	0	816	28	0.775960037304758	0.0184283211995636	0.775960037304758	471.657669673845	0	11.2014261239249						214	16	3	NaN	NaN	NaN	0.026235	1	8809	36.57	22.922	1	69123			10233	1757	8627	8856	10233	10233		
ISNLLSDYGYHLR	13	Unmodified	_ISNLLSDYGYHLR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.603574	1549.78889	-1.5398	-0.00079699	-0.50582	-0.00026181	-2.0456	-0.0010588	517.603141678308	11.882	0.12416	11.882	11.846	11.97	0	762	28	0.812773098473386	0.0183822106275564	0.812773098473386	492.655655171304	0	11.1422241179311						290	15	4	NaN	NaN	NaN	0.00013794	1	20049	63.212	58.061	1	113210			10234	918	8628	8857	10234	10234		
ISNLLSDYGYHLR	13	Unmodified	_ISNLLSDYGYHLR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.901722	1549.78889	1.3953	0.0010826	1.6648	0.0012918	3.0602	0.0023744	775.903443357628	11.882	0.079821	11.882	11.846	11.926	0	327	28	1.10599442759226	0.01801947676188	1.10599442759226	446.928778847307	0	7.28161240575753						140	10	2	NaN	NaN	NaN	0.00052169	1	20050	74.849	67.291	1	49528			10235	918	8628	8857	10235	10235		
ISNQFDWALMR	11	Oxidation (M)	_ISNQFDWALM(Oxidation (M))R_	ISNQFDWALM(1)R	ISNQFDWALM(54)R	0	1	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.837536	1395.66052	0.60487	0.00042271	-0.48721	-0.00034048	0.11766	8.2228E-05	698.83698895389	12.582	0.14186	12.582	12.511	12.653	0	492	34	0.995464410099171	0.0221915758833877	0.995464410099171	402.657064611917	0	8.97630765466272						295	16	4	NaN	NaN	NaN	0.015971	1	15311	53.517	50.172	1	84758			10236	1055	8629	8858	10236	10236	375	
ISNQVDLSNVCAQYR	15	Unmodified	_ISNQVDLSNVCAQYR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.928142	1765.84173	2.9604	0.0026167	-1.1807	-0.0010436	1.7797	0.0015731	884.428344099302	9.6647	0.1064	9.6647	9.6204	9.7268	0	321	52	1.10999792833052	0.0340321108810946	1.10999792833052	448.060312737179	0	13.737357390769						493	13	5	NaN	NaN	NaN	2.4557E-17	1	26292	175.68	165.2	1	139020			10237	352	8630	8859	10237	10237		
ISNTAISISDHTALAQFCK	19	Unmodified	_ISNTAISISDHTALAQFCK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.02277	2076.03099	0.2507	0.00026048	0.46076	0.00047874	0.71146	0.00073922	1039.52489128103	11.713	0.079781	11.713	11.687	11.766	0	63	58	1.28111162701928	0.037599703169712	1.28111162701928	516.529435490473	0	15.1597667551014						389	10	4	NaN	NaN	NaN	8.5928E-06	1	32959	51.577	46.235	1	107230			10238	801	8631	8860	10238	10238		
ISNTAISISDHTALAQFCK	19	Unmodified	_ISNTAISISDHTALAQFCK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.017606	2076.03099	0.71006	0.00049209	0.70539	0.00048885	1.4155	0.00098094	693.352248530244	11.713	0.19509	11.713	11.651	11.846	0	498	106	0.991429299781895	0.0707465068031221	0.991429299781895	599.597359233339	0	42.7861257110995						855	23	5	NaN	NaN	NaN	4.2092E-11	1	32960	135.24	127.59	1	275550			10239	801	8631	8860	10239	10239		
ISNYGWDQSDK	11	Unmodified	_ISNYGWDQSDK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.793849	1311.57314	1.5946	0.0010473	1.2689	0.0008334	2.8635	0.0018807	656.794669949861	6.2855	0.40793	6.2855	6.1968	6.6047	-8.8818E-16	558	49	0.951016745717027	0.0323792954262402	0.951016745717027	384.920196470635	0	13.1053893773997						1087	47	5	NaN	NaN	NaN	3.3366E-05	1	12698	124.81	96.71	1	797470			10240	2950	8632	8861	10240	10240		
ISPDGEEGYPGELK	14	Unmodified	_ISPDGEEGYPGELK_			0	0	0	Q96C23	Q96C23	Q96C23	GALM	Aldose 1-epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.854103	1489.69365	1.6076	0.001199	0.34679	0.00025866	1.9544	0.0014577	745.854805770945	7.456	0.13306	7.456	7.394	7.527	0	456	43	1.01965166402748	0.0281950841620375	1.01965166402748	412.185096316083	0	11.3976114500376						349	16	3	NaN	NaN	NaN	0.0041369	1	18207	29.131	16.535	1	114650			10241	2489	8633	8862	10241	10241		
ISPFEHQTYCQR	12	Unmodified	_ISPFEHQTYCQR_			0	0	0	P28482;P27361	P28482	P28482	MAPK1;MAPK3	Mitogen-activated protein kinase 1;Mitogen-activated protein kinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.57703	1564.70926	-1.2414	-0.00064873	1.6247	0.00084905	0.38332	0.00020031	522.577840828117	5.4697	0.079789	5.4697	5.443	5.5228	0	774	31	0.804600385996946	0.0204374693945948	0.804600385996946	487.660696758934	0	12.3869572254907						151	10	3	NaN	NaN	NaN	3.1845E-05	1	20478	88.181	78.919	1	39363			10242	879	8634	8863	10242	10242		
ISPGGISQILDLVK	14	Unmodified	_ISPGGISQILDLVK_			0	0	0	P49643	P49643	P49643	PRIM2	DNA primase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.427042	1438.83953	0.91218	0.00065716	-0.40891	-0.00029459	0.50327	0.00036257	720.426808766251	18.763	0.097544	18.763	18.718	18.816	0	426	40	1.03977710643793	0.0261432202901304	1.03977710643793	420.457336149439	0	10.5716010609361						252	12	3	NaN	NaN	NaN	0.0042674	1	16648	39.702	32.145	1	73309			10243	1141	8635	8864	10243	10243		
ISPMLSPFISSVVR	14	Unmodified	_ISPMLSPFISSVVR_			0	0	0	Q9NXR7	Q9NXR7	Q9NXR7	BRE	BRCA1-A complex subunit BRE	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.928894	1531.84324	1.0528	0.00080744	0.42048	0.00032248	1.4733	0.0011299	766.93010371655	17.61	0.14186	17.61	17.53	17.672	0	396	31	1.05987478976334	0.0200838253150546	1.05987478976334	428.336411065148	0	8.11665089027241						276	17	3	NaN	NaN	NaN	0.00033225	1	19500	68.548	58.806	1	61819			10244	3105	8636	8865	10244	10244		
ISPTFADAYSNMGNTLK	17	Unmodified	_ISPTFADAYSNMGNTLK_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.440551	1828.86655	1.6904	0.0015474	1.2009	0.0010994	2.8913	0.0026468	916.443052510645	13.23	0.15959	13.23	13.176	13.336	1.7764E-15	240	67	1.16393748060522	0.0438571688460385	1.16393748060522	469.707315338481	0	17.6985734889366						509	19	5	NaN	NaN	NaN	2.8197E-10	1	27931	97.084	75.722	1	105380			10245	161	8637	8866	10245	10245		
ISPVCAVLNSSLSAPPR	17	Unmodified	_ISPVCAVLNSSLSAPPR_			0	0	0		REV__Q8TEU7	REV__Q8TEU7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.474728	1766.9349	2.2205	0.001964	3.202	0.002832	5.4225	0.0047961	884.478069395971	14.161	0.18619	14.161	14.081	14.267	0	288	46	1.13199748998575	0.0299705228229417	1.13199748998575	456.938409030984	0	12.0978033411665						370	22	5	NaN	NaN	NaN	0.064149	1	26326	14.949	9.5617	1	143240	+		10246	3506	8638	8867	10246	10246		
ISQAEEEDQQLLGHLLLVAK	20	Unmodified	_ISQAEEEDQQLLGHLLLVAK_			0	0	0	Q9BX68	Q9BX68	Q9BX68	HINT2	Histidine triad nucleotide-binding protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.405747	2233.19541	0.22942	0.00017101	-3.9525	-0.0029462	-3.7231	-0.0027752	745.736500284065	17.193	0.15076	17.193	17.14	17.291	0	483	46	1.00151498427745	0.0302528786941803	1.00151498427745	605.413960199763	0	18.2878093540464						418	18	5	NaN	NaN	NaN	1.4726E-07	1	35020	87.251	62.33	1	155320			10247	2783	8639	8868	10247	10247		
ISQLGYSCFYIHAK	14	Unmodified	_ISQLGYSCFYIHAK_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.948464	1685.82356	0.067683	3.8102E-05	0.44703	0.00025166	0.51471	0.00028976	563.283167341003	10.684	0.13305	10.684	10.64	10.773	0	684	58	0.86578508874114	0.0386562019240377	0.86578508874114	524.413755941784	0	23.4144065369666						247	16	4	NaN	NaN	NaN	0.0028498	1	24075	34.779	31.043	1	42553			10248	847	8640	8869	10248	10248		
ISQMPVILTPLHFDRDPLQK	20	Unmodified	_ISQMPVILTPLHFDRDPLQK_			0	0	1	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	587.825332	2347.27222	-0.049546	-2.9124E-05	-0.76722	-0.00045099	-0.81676	-0.00048011	588.075825228013	15.278	0.1862	15.278	15.198	15.384	0	672	37	0.873923798053065	0.024412742353751	0.873923798053065	704.167115208955	0	19.6706513724398						740	22	6	NaN	NaN	NaN	0.00093112	1	36026	65.421	62.675	1	367690			10249	1155	8641	8870	10249	10249		
ISQMPVILTPLHFDRDPLQK	20	Oxidation (M)	_ISQM(Oxidation (M))PVILTPLHFDRDPLQK_	ISQM(1)PVILTPLHFDRDPLQK	ISQM(86)PVILTPLHFDRDPLQK	0	1	1	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	591.824061	2363.26714	0.22805	0.00013496	-0.83977	-0.00049699	-0.61172	-0.00036203	592.074147204176	13.567	0.11529	13.567	13.513	13.629	0	684	46	0.86578508874114	0.0305180491511973	0.86578508874114	697.58157421991	0	24.5890453021858						230	14	4	NaN	NaN	NaN	4.9362E-06	1	36160	85.742	84.118	1	41960			10250	1155	8641	8871	10250	10250	418	
ISQSNYIPTQQDVLR	15	Unmodified	_ISQSNYIPTQQDVLR_			0	0	0	P08754	P08754	P08754	GNAI3	Guanine nucleotide-binding protein G(k) subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.460133	1760.90571	2.5607	0.0022571	-0.74839	-0.00065968	1.8123	0.0015974	881.460084270756	10.312	0.14185	10.312	10.268	10.41	0	309	43	1.11800162319566	0.0280013716258987	1.11800162319566	451.300927242694	0	11.3032438564034						406	17	5	NaN	NaN	NaN	0.0003992	1	26175	87.573	79.198	1	137450			10251	590	8642	8872	10251	10251		
ISSDLDGHPVPK	12	Unmodified	_ISSDLDGHPVPK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	422.222582	1263.64592	-0.094097	-3.973E-05	1.304	0.00055056	1.2099	0.00051083	422.557708617633	4.6361	0.33694	4.6361	4.5386	4.8755	0	825	118	0.769815552739974	0.0797672993664164	0.769815552739974	467.550325694954	0	48.4469645564205						1520	39	5	NaN	NaN	NaN	0.0548	1	11327	22.004	9.937	1	1513000			10252	888	8643	8873	10252	10252		
ISSDLDGHPVPK	12	Unmodified	_ISSDLDGHPVPK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.830234	1263.64592	2.3244	0.001471	-0.022519	-1.4251E-05	2.3019	0.0014567	632.830995682321	4.4322	0.1596	4.4322	4.3435	4.5031	0	576	61	0.938871150116794	0.0404685229802539	0.938871150116794	380.154524273294	0	16.3859461436082						269	19	3	NaN	NaN	NaN	0.04548	1	11328	27.589	23.981	1	57557			10253	888	8643	8873	10253	10253		
ISSDLDGHPVPK	12	Unmodified	_ISSDLDGHPVPK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.830234	1263.64592	2.5268	0.001599	0.65523	0.00041465	3.182	0.0020137	632.831224331805	4.6273	0.27489	4.6273	4.5563	4.8312	0	546	82	0.959108205975751	0.0546211838383772	0.959108205975751	388.348625951983	0	22.1164427114084						982	32	5	NaN	NaN	NaN	2.1322E-07	1	11329	151.22	119.08	1	1333200			10254	888	8643	8873	10254	10254		
ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR	34	Unmodified	_ISSIQATTAAGSGHPTSCCSAAEIMAVLFFHTMR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	903.428192	3609.68366	0.54496	0.00049233	2.2009	0.0019884	2.7459	0.0024807	903.932132417147	19.295	0.062083	19.295	19.268	19.33	0	315	40	1.11400032671325	0.0260102225300953	1.11400032671325	895.761747934561	0	20.9146818353872						209	8	4	NaN	NaN	NaN	0.0093527	1	38687	33.395	33.193	1	43121			10255	888	8644	8874	10255	10255		
ISSIQSIVPALEIANAHR	18	Unmodified	_ISSIQSIVPALEIANAHR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.361813	1918.06361	1.5583	0.00099789	0.73102	0.00046812	2.2893	0.001466	640.697137031988	15.127	0.39899	15.127	14.852	15.251	0	540	73	0.963152256458504	0.0484816592636016	0.963152256458504	582.814259054754	0	29.3367970972286						717	46	2	NaN	NaN	NaN	0.0020289	1	30021	53.363	53.211	1	4213700			10256	635	8645	8875	10256	10256		
ISSIQSIVPALEIANAHR	18	Unmodified	_ISSIQSIVPALEIANAHR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.361813	1918.06361	1.4573	0.00093321	0.88863	0.00056904	2.3459	0.0015023	641.031285942098	15.109	0.50544	15.109	14.914	15.42	0	543	109	0.961130371139249	0.0728535054878033	0.961130371139249	581.59079285741	0	44.0844752089876						3264	58	6	NaN	NaN	NaN	4.5186E-07	1	30022	128.46	107.85	1	5234700			10257	635	8645	8875	10257	10257		
ISSIQSIVPALEIANAHR	18	Unmodified	_ISSIQSIVPALEIANAHR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.039081	1918.06361	2.194	0.0021063	1.0737	0.0010308	3.2676	0.0031371	960.541631980698	15.127	0.44336	15.127	14.914	15.358	0	204	124	1.18784641916898	0.0815601152619831	1.18784641916898	479.187954063849	0	32.9020857704345						3068	51	6	NaN	NaN	NaN	1.3516E-19	1	30023	148.62	125.47	1	2547200			10258	635	8645	8875	10258	10258		
ISSLLEEQFQQGK	13	Unmodified	_ISSLLEEQFQQGK_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.893563	1505.77257	2.5079	0.0018907	0.26579	0.00020038	2.7737	0.0020911	753.894072835425	10.782	0.52318	10.782	10.64	11.163	0	429	100	1.03776581230406	0.0663270087780938	1.03776581230406	419.466346158416	0	26.8094667350753						1672	60	6	NaN	NaN	NaN	1.5237E-24	1	18683	236.42	212.58	1	2313800			10259	1370	8646	8876	10259	10259		
ISSMVVMENVGQQK	14	Unmodified	_ISSMVVMENVGQQK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.389276	1548.764	2.0414	0.0015829	-5.8153	-0.0045091	-3.7738	-0.0029262	775.38519245648	9.5406	0.15073	9.5406	9.4608	9.6115	0	396	85	1.05987478976334	0.0561572719375942	1.05987478976334	428.29452001294	0	22.6931068292685						857	18	4	NaN	NaN	NaN	0.008277	1	20000	60	45.545	1	262450			10260	1076	8647	8877	10260	10260		
ISSPTETER	9	Unmodified	_ISSPTETER_			0	0	0	P31949	P31949	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.253828	1018.4931	1.0709	0.00054642	0.60297	0.00030767	1.6738	0.00085409	510.254363641527	2.7917	0.72712	2.7917	2.6232	3.3503	0	753	70	0.81889964927511	0.0469310793669843	0.81889964927511	332.438642532467	0	19.0520344356654						2002	83	4	NaN	NaN	NaN	0.00012873	1	4702	79.059	61.663	1	1454700			10261	935	8648	8878	10261	10261		
ISSTLYQAAAPVLTPAK	17	Unmodified	_ISSTLYQAAAPVLTPAK_			0	0	0	Q8N6L1	Q8N6L1	Q8N6L1	KRTCAP2	Keratinocyte-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.987995	1729.96144	1.9606	0.0016978	-0.65877	-0.00057049	1.3018	0.0011273	866.48971958944	12.618	0.14188	12.618	12.529	12.671	0	288	34	1.13199748998575	0.0219814046771438	1.13199748998575	457.014449610359	0	8.87441858224787						351	17	4	NaN	NaN	NaN	2.6699E-05	1	25326	82.437	77.62	1	94622			10262	2264	8649	8879	10262	10262		
ISTEEAIR	8	Unmodified	_ISTEEAIR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.748182	917.481811	0.039901	1.8344E-05	0.11986	5.5105E-05	0.15976	7.345E-05	459.748290369042	4.1219	0.27495	4.1219	4.0154	4.2904	0	753	58	0.81889964927511	0.0388069022420119	0.81889964927511	332.926141426391	0	15.7770640585581						363	32	2	NaN	NaN	NaN	0.012404	1	2654	51.43	30.772	1	150380			10263	718	8650	8880	10263	10263		
ISTETEETEGSLHCCK	16	Unmodified	_ISTETEETEGSLHCCK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.604874	1879.79279	1.7265	0.0010836	0.047076	2.9545E-05	1.7736	0.0011131	627.939066711797	4.042	0.062051	4.042	4.0154	4.0775	0	627	19	0.90440375274676	0.0121793027426124	0.90440375274676	547.344814987048	0	7.37090949266894						110	8	3	NaN	NaN	NaN	0.0028168	1	29144	48.822	48.203	1	26402			10264	3409	8651	8881	10264	10264		
ISTEVGITNVDLSTVDK	17	Unmodified	_ISTEVGITNVDLSTVDK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.972738	1789.93092	2.3838	0.0021358	-3.8899	-0.0034852	-1.5061	-0.0013495	895.969733373977	12.689	0.23058	12.689	12.564	12.795	0	273	37	1.14198628764525	0.0239714689101356	1.14198628764525	460.924367186941	0	9.675277415746						465	27	4	NaN	NaN	NaN	1.5061E-06	1	26978	98.167	75.018	1	176140			10265	519	8652	8882	10265	10265		
ISTILFGAAYTCLEAATGR	19	Unmodified	_ISTILFGAAYTCLEAATGR_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.01696	2014.01936	0.22528	0.00022709	1.9866	0.0020025	2.2119	0.0022296	1008.51973444935	18.683	0.035453	18.683	18.674	18.71	0	135	19	1.23356193185193	0.0119069825789133	1.23356193185193	497.45967524327	0	4.80174001311877						44	5	2	NaN	NaN	NaN	1.5029E-10	1	31874	104	95.246	1	8654.2			10266	2892	8653	8883	10266	10266		
ISTINILLSTLK	12	Unmodified	_ISTINILLSTLK_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.413403	1314.81225	-0.020853	-1.373E-05	-0.20862	-0.00013736	-0.22948	-0.00015109	658.413655065777	18.568	0.062071	18.568	18.55	18.612	0	507	49	0.985374541851584	0.0322808922550346	0.985374541851584	398.816139861552	0	13.065225752888						166	8	3	NaN	NaN	NaN	0.00014971	1	12814	55.754	39.102	1	33578			10267	253	8654	8884	10267	10267		
ISTITALGHEGK	12	Unmodified	_ISTITALGHEGK_			0	0	0	Q96T23	Q96T23	Q96T23	RSF1	Remodeling and spacing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.840602	1225.66665	1.5885	0.00097509	-0.40005	-0.00024556	1.1885	0.00072953	613.840380722	5.6026	0.044333	5.6026	5.576	5.6203	0	504	13	0.987393073566096	0.00807356879308341	0.987393073566096	399.935230519577	0	3.27013089601269						47	6	2	NaN	NaN	NaN	0.015752	1	10178	21.15	16.948	1	8145.1			10268	2627	8655	8885	10268	10268		
ISTLSCENK	9	Unmodified	_ISTLSCENK_			0	0	0	Q14116	Q14116	Q14116	IL18	Interleukin-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.258056	1050.50156	1.3453	0.00070797	-3.3258	-0.0017502	-1.9805	-0.0010423	526.257056818879	3.0045	0.17736	3.0045	2.969	3.1464	0	708	28	0.849494101904619	0.0183388204791043	0.849494101904619	344.718586978557	0	7.4417612414689						222	21	4	NaN	NaN	NaN	0.006868	1	5476	81.642	51.081	1	62293			10269	1719	8656	8886	10269	10269		
ISTLTIEEGNLDIQRPK	17	Unmodified	_ISTLTIEEGNLDIQRPK_			0	0	1	Q12972	Q12972	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.021345	1926.04221	1.2836	0.00082539	0.097509	6.27E-05	1.3811	0.00088809	643.355607712105	10.959	0.062089	10.959	10.915	10.977	0	573	22	0.940896116921038	0.0141747684454057	0.940896116921038	569.329898865501	0	8.57705685073199						127	8	3	NaN	NaN	NaN	0.042967	1	30202	10.758	10.082	1	26571			10270	1612	8657	8887	10270	10270		
ISVATGALEAAQGSK	15	Unmodified	_ISVATGALEAAQGSK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.880456	1401.74636	2.1742	0.001526	-0.55498	-0.00038953	1.6192	0.0011365	701.880118132458	8.6091	0.11544	8.6091	8.5736	8.6891	0	360	37	1.08395544855938	0.0240673839691297	1.08395544855938	438.432277734106	0	9.73464175738104						272	14	3	NaN	NaN	NaN	5.8902E-12	1	15518	178.65	155.6	1	82773			10271	1193	8658	8888	10271	10271		
ISVIVETVYTHVLHPYPTQITQSEK	25	Unmodified	_ISVIVETVYTHVLHPYPTQITQSEK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	721.387916	2881.52256	0.71712	0.00051732	0.91534	0.00066031	1.6325	0.0011776	721.639519910759	15.668	0.15072	15.668	15.606	15.757	0	483	61	1.00151498427745	0.0403288181464504	1.00151498427745	806.09411872079	0	32.459647267552						724	18	6	NaN	NaN	NaN	7.3873E-05	1	38048	48.037	46.089	1	231260			10272	518	8659	8889	10272	10272		
ISVIVETVYTHVLHPYPTQITQSEK	25	Unmodified	_ISVIVETVYTHVLHPYPTQITQSEK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	961.514796	2881.52256	1.4932	0.0014357	1.0003	0.00096177	2.4934	0.0023975	961.849865948777	15.668	0.15072	15.668	15.615	15.766	0	327	37	1.10599442759226	0.0240243165075487	1.10599442759226	667.641358618836	0	14.5024485773466						470	18	6	NaN	NaN	NaN	1.8276E-06	1	38049	38.656	38.277	1	131250			10273	518	8659	8889	10273	10273		
ISVLYSFLR	9	Unmodified	_ISVLYSFLR_			0	0	0	Q13206	Q13206	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.321317	1096.62808	-0.44369	-0.00024373	-1.9625	-0.0010781	-2.4062	-0.0013218	549.320029695781	16.076	0.12416	16.076	16.032	16.156	0	654	28	0.886123392477847	0.018290507163651	0.886123392477847	359.386728693993	0	7.41811534544593						222	15	3	NaN	NaN	NaN	0.0016348	1	6636	60.589	50.51	1	60800			10274	1643	8660	8890	10274	10274		
ISVMGGEQAANVLATITK	18	Unmodified	_ISVMGGEQAANVLATITK_			0	0	0	Q9HCC0	Q9HCC0	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.987669	1801.96078	1.2216	0.0011018	-4.6337	-0.0041795	-3.4121	-0.0030777	901.983466276437	16.537	0.17733	16.537	16.466	16.644	0	261	31	1.14997238118939	0.0199624904566638	1.14997238118939	464.123866236534	0	8.05677458172869						242	21	3	NaN	NaN	NaN	0.03851	1	27267	44.16	39.633	1	77708			10275	2960	8661	8891	10275	10275		
ISVMGGEQAANVLATITK	18	Unmodified	_ISVMGGEQAANVLATITK_			0	0	0	Q9HCC0	Q9HCC0	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.987669	1801.96078	0.22997	0.00020743	0.83941	0.00075714	1.0694	0.00096456	901.988336260336	16.537	0.088675	16.537	16.502	16.59	0	90	61	1.26329880838669	0.039641027990488	1.26329880838669	509.861899482215	0	15.998946325667						313	11	3	NaN	NaN	NaN	5.9773E-05	1	27268	74.643	68.121	1	63538			10276	2960	8661	8891	10276	10276		
ISVNDFIIK	9	Unmodified	_ISVNDFIIK_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.8055	1047.59645	-0.081993	-4.303E-05	-0.48186	-0.00025288	-0.56385	-0.00029591	524.805272076953	14.152	0.19508	14.152	14.045	14.24	0	705	58	0.851531465363931	0.0386884208613425	0.851531465363931	345.557719075313	0	15.7000451671595						661	23	4	NaN	NaN	NaN	0.00058474	1	5417	88.921	35.043	1	476330			10277	626	8662	8892	10277	10277		
ISVNNVLPVFDNLMQQK	17	Unmodified	_ISVNNVLPVFDNLMQQK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.022043	1958.02953	0.78282	0.00076718	-2.1946	-0.0021507	-1.4117	-0.0013835	980.523397389226	19.153	0.17733	19.153	19.038	19.215	0	207	55	1.18585551256002	0.0358437157950102	1.18585551256002	478.314676459629	0	14.4575583973039						779	21	5	NaN	NaN	NaN	0.013992	1	30870	54.309	37.549	1	247730			10278	557	8663	8893	10278	10278		
ISVNNVLPVFDNLMQQK	17	Unmodified	_ISVNNVLPVFDNLMQQK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.683787	1958.02953	-0.53076	-0.00034695	-0.73827	-0.0004826	-1.269	-0.00082954	654.01799449463	19.135	0.11527	19.135	19.082	19.197	0	597	28	0.924688525662974	0.018242384517949	0.924688525662974	559.457475861594	0	11.0370553033424						270	14	4	NaN	NaN	NaN	9.5439E-05	1	30871	91.939	76.964	1	64627			10279	557	8663	8893	10279	10279		
ISVNNVLPVFDNLMQQK	17	Oxidation (M)	_ISVNNVLPVFDNLM(Oxidation (M))QQK_	ISVNNVLPVFDNLM(1)QQK	ISVNNVLPVFDNLM(53)QQK	0	1	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.0195	1974.02445	0.70886	0.00070037	-0.71964	-0.00071102	-0.010785	-1.0656E-05	988.520740543426	17.016	0.23057	17.016	16.918	17.149	0	204	55	1.18784641916898	0.0358240323566106	1.18784641916898	479.090379171242	0	14.4487948679246						593	27	4	NaN	NaN	NaN	0.01512	1	31186	52.863	49.778	1	105350			10280	557	8663	8894	10280	10280	136	
ISVVPTQPGLLLSSSGDGTLR	21	Unmodified	_ISVVPTQPGLLLSSSGDGTLR_			0	0	0	P57081	P57081	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.08114	2096.14773	2.1368	0.0022417	-1.241	-0.0013019	0.89585	0.00093982	1049.58213921411	15.508	0.20408	15.508	15.411	15.615	0	120	61	1.2434810169581	0.0396790775411653	1.2434810169581	501.325242891311	0	15.9971265461612						483	24	3	NaN	NaN	NaN	1.4042E-07	1	33264	109.16	107.19	1	108820			10281	1292	8664	8895	10281	10281		
ISVYDYDTFTR	11	Unmodified	_ISVYDYDTFTR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.327524	1378.6405	0.34929	0.00024113	4.3154	0.002979	4.6647	0.0032202	690.329544812277	12.015	0.17734	12.015	11.935	12.112	0	495	34	0.993446994398923	0.0221946439688537	0.993446994398923	401.889682304194	0	8.97863546196965						530	21	5	NaN	NaN	NaN	0.011041	1	14762	60.547	55.397	1	203930			10282	3136	8665	8896	10282	10282		
ISVYSIMGGSTDGLR	15	Unmodified	_ISVYSIMGGSTDGLR_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.392873	1554.77119	2.23	0.0017358	-0.68143	-0.00053042	1.5486	0.0012054	778.392415156645	14.577	0.18622	14.577	14.498	14.684	0	342	43	1.09598084995137	0.0280476801589677	1.09598084995137	442.86976684305	0	11.333655668383						518	22	4	NaN	NaN	NaN	0.012262	1	20198	55.578	50.082	1	163180			10283	400	8666	8897	10283	10283		
ISVYYNEASSHK	12	Unmodified	_ISVYYNEASSHK_			0	0	0	Q13509	Q13509	Q13509	TUBB3	Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.561375	1396.66229	-0.69281	-0.00032324	0.88585	0.0004133	0.19303	9.0061E-05	466.561784316393	4.6982	0.11528	4.6982	4.6627	4.778	0	810	28	0.78005493425781	0.0184231892400387	0.78005493425781	473.281907428624	0	11.1778821740806						245	14	4	NaN	NaN	NaN	0.0086894	1	15333	26.579	25.527	1	75734			10284	1675	8667	8898	10284	10284		
ISVYYNEASSHK	12	Unmodified	_ISVYYNEASSHK_			0	0	0	Q13509	Q13509	Q13509	TUBB3	Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.338424	1396.66229	2.0893	0.0014611	-0.79915	-0.00055887	1.2902	0.00090225	699.337580712657	4.6982	0.12412	4.6982	4.6627	4.7869	0	483	37	1.00151498427745	0.0241939396115666	1.00151498427745	405.101622149804	0	9.78617827661463						213	15	3	NaN	NaN	NaN	0.0045375	1	15334	50.09	44.224	1	57910			10285	1675	8667	8898	10285	10285		
ISVYYNEATGGK	12	Unmodified	_ISVYYNEATGGK_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.322242	1300.62993	2.2271	0.0014505	0.98584	0.0006421	3.2129	0.0020926	651.323563318533	6.6845	0.47889	6.6845	6.6047	7.0836	8.8818E-16	549	91	0.957085760909907	0.0606608223075645	0.957085760909907	387.410580957351	0	24.5543768085965						2184	55	5	NaN	NaN	NaN	2.3309E-07	1	12364	136.84	124.01	1	3695000			10286	560	8668	8899	10286	10286		
ISWIPFMQEK	10	Unmodified	_ISWIPFMQEK_			0	0	0	O60502	O60502	O60502	MGEA5	Protein O-GlcNAcase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.831191	1277.64783	0.32646	0.00020888	-3.8059	-0.0024352	-3.4795	-0.0022263	639.828683220511	16.599	0.16848	16.599	16.537	16.706	0	579	49	0.936845902828289	0.0323972352469324	0.936845902828289	379.289563080684	0	13.1162800250655						372	20	3	NaN	NaN	NaN	0.00040417	1	11694	95.311	74.975	1	99426			10287	262	8669	8900	10287	10287		
ISYFTFIGTPVQATNMNDFK	20	Unmodified	_ISYFTFIGTPVQATNMNDFK_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1147.56173	2293.10891	0.063038	7.234E-05	0.27079	0.00031075	0.33383	0.00038309	1148.06413502953	18.107	0.097518	18.107	18.071	18.169	0	87	67	1.26527909472281	0.0435693076884749	1.26527909472281	509.824941055717	0	17.5555889738156						594	12	5	NaN	NaN	NaN	2.7376E-07	1	35585	94.63	93.687	1	127920			10288	198	8670	8901	10288	10288		
ISYFTFIGTPVQATNMNDFK	20	Oxidation (M)	_ISYFTFIGTPVQATNM(Oxidation (M))NDFK_	ISYFTFIGTPVQATNM(1)NDFK	ISYFTFIGTPVQATNM(77)NDFK	0	1	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.55919	2309.10382	-0.74745	-0.00086372	1.1094	0.001282	0.36195	0.00041826	1156.06218004792	16.839	0.088653	16.839	16.794	16.883	0	90	40	1.26329880838669	0.0257402018857791	1.26329880838669	509.005771496164	0	10.3711894860962						208	11	3	NaN	NaN	NaN	8.8093E-05	1	35709	76.563	74.016	1	37471			10289	198	8670	8902	10289	10289	40	
ISYGNDALMPSLTETK	16	Unmodified	_ISYGNDALMPSLTETK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.429652	1738.84475	1.7613	0.001533	1.8167	0.0015813	3.578	0.0031144	870.932224541215	12.538	0.1862	12.538	12.476	12.662	0	321	28	1.10999792833052	0.0180145146238793	1.10999792833052	448.114492612188	0	7.27259472679913						285	22	4	NaN	NaN	NaN	0.0023829	1	25568	45.183	41.679	1	55302			10290	523	8671	8903	10290	10290		
ISYTDAEGNLGLLENVCDPSGK	22	Unmodified	_ISYTDAEGNLGLLENVCDPSGK_			0	0	0	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1176.55483	2351.09511	0.68156	0.0008019	0.2625	0.00030884	0.94406	0.0011107	1177.05674693065	15.18	0.053232	15.18	15.154	15.207	0	63	34	1.28111162701928	0.0217593046214073	1.28111162701928	516.127718483755	0	8.76627767103315						152	7	4	NaN	NaN	NaN	8.4067E-06	1	36047	72.075	69	1	23606			10291	354	8672	8904	10291	10291		
ITADGAHFELR	11	Unmodified	_ITADGAHFELR_			0	0	0	Q8IWX8	Q8IWX8	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.547288	1228.62004	-1.812	-0.00074389	0.60013	0.00024638	-1.2118	-0.00049751	410.547600332381	7.3762	0.062043	7.3762	7.3496	7.4117	0	780	34	0.800512323802183	0.0224890390033184	0.800512323802183	486.343688598057	0	13.6630028753963						129	8	3	NaN	NaN	NaN	0.018789	1	10270	28.647	24.444	1	26990			10292	2206	8673	8905	10292	10292		
ITADGAHFELR	11	Unmodified	_ITADGAHFELR_			0	0	0	Q8IWX8	Q8IWX8	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.317294	1228.62004	1.6187	0.00099601	5.8869	0.0036223	7.5056	0.0046183	615.824750258001	7.3762	0.15959	7.3762	7.3142	7.4738	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	397.471455183855	0	7.36115966317647						187	19	3	NaN	NaN	NaN	0.00085901	1	10271	62.271	42.948	1	54543			10293	2206	8673	8905	10293	10293		
ITADLLSNGIDVYPQK	16	Unmodified	_ITADLLSNGIDVYPQK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.967259	1745.91997	1.9855	0.0017352	4.0074	0.0035023	5.9929	0.0052376	873.97197356055	14.178	0.14187	14.178	14.099	14.24	0	279	37	1.13799159301878	0.0239714689101356	1.13799159301878	459.4010118087	0	9.6771515180036						291	17	3	NaN	NaN	NaN	0.0081193	1	25780	62.454	55.247	1	85370			10294	3215	8674	8906	10294	10294		
ITAEEMYDIFGK	12	Unmodified	_ITAEEMYDIFGK_			0	0	0	Q9Y3B4	Q9Y3B4	Q9Y3B4	SF3B6	Splicing factor 3B subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.83941	1415.66427	1.2274	0.00087004	-0.32031	-0.00022705	0.90711	0.000643	708.839636002229	15.748	0.21282	15.748	15.695	15.908	0	486	49	0.999498404980629	0.03226750840465	0.999498404980629	404.232732445409	0	13.050128971311						700	25	5	NaN	NaN	NaN	1.2618E-16	1	15953	171.34	155.76	1	380630			10295	3380	8675	8907	10295	10295		
ITAFHNAHDLSK	12	Unmodified	_ITAFHNAHDLSK_			0	0	0	Q8N3U4	Q8N3U4	Q8N3U4	STAG2	Cohesin subunit SA-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.901843	1352.6837	-0.29902	-0.00013513	1.5099	0.00068233	1.2109	0.0005472	451.902352350354	3.6164	0.09752	3.6164	3.5898	3.6874	0	816	25	0.775960037304758	0.0163841521747742	0.775960037304758	470.947221741153	0	9.94390249025633						152	12	3	NaN	NaN	NaN	0.0042488	1	13968	38.1	34.997	1	33730			10296	2249	8676	8908	10296	10296		
ITAFVPNDGCLNFIEENDEVLVAGFGR	27	Unmodified	_ITAFVPNDGCLNFIEENDEVLVAGFGR_			0	0	0	P62266	P62266	P62266	RPS23	40S ribosomal protein S23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	999.486801	2995.43857	1.5205	0.0015197	-0.71752	-0.00071715	0.80294	0.00080253	999.820712969148	19.924	0.062085	19.924	19.915	19.978	0	339	28	1.09798411722691	0.0180269238139776	1.09798411722691	662.684775240917	0	10.8800917686518						202	8	6	NaN	NaN	NaN	8.3558E-10	1	38217	85.562	84.601	1	44529			10297	1377	8677	8909	10297	10297		
ITAFVVER	8	Unmodified	_ITAFVVER_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.77146	933.528367	-0.52915	-0.00024752	-1.2061	-0.00056419	-1.7353	-0.00081171	467.771027276609	8.2188	0.15968	8.2188	8.1745	8.3342	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	336.989641642436	0	9.1228861151904						254	19	3	NaN	NaN	NaN	0.0031851	1	2947	82.716	55.012	1	80519			10298	1145	8678	8910	10298	10298		
ITAHLVHELR	10	Unmodified	_ITAHLVHELR_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	396.899773	1187.67749	-1.2572	-0.00049896	0.12432	4.9344E-05	-1.1328	-0.00044962	396.90019079194	4.6893	0.19511	4.6893	4.6361	4.8312	0	834	31	0.763668499782291	0.0204944614564727	0.763668499782291	464.136933639465	0	12.4559759892038						289	23	3	NaN	NaN	NaN	0.00056498	1	9105	63.397	52.037	1	141940			10299	1056	8679	8911	10299	10299		
ITAHLVHELR	10	Unmodified	_ITAHLVHELR_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.846022	1187.67749	1.8557	0.0011038	0.10004	5.9508E-05	1.9557	0.0011634	594.845965688153	4.6893	0.13296	4.6893	4.6539	4.7869	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.623673755736	0	9.00041889854936						211	16	3	NaN	NaN	NaN	0.00060673	1	9106	74.424	53.336	1	70134			10300	1056	8679	8911	10300	10300		
ITALDEFATK	10	Unmodified	_ITALDEFATK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.797872	1107.58119	0.38791	0.00021521	-1.0998	-0.00061017	-0.71189	-0.00039496	554.797119274496	10.259	0.39013	10.259	10.073	10.463	0	660	76	0.882057989648486	0.0507788117430045	0.882057989648486	357.694007278182	0	20.5919303156224						830	45	4	NaN	NaN	NaN	0.00065666	1	6927	69.915	15.478	1	264910			10301	1703	8680	8912	10301	10301		
ITAQSIEELCAVNLYGPDAQVDR	23	Unmodified	_ITAQSIEELCAVNLYGPDAQVDR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1281.62886	2561.24317	0.79702	0.0010215	-0.68251	-0.00087472	0.11451	0.00014676	1282.13003973131	15.766	0.05323	15.766	15.739	15.792	0	63	43	1.28111162701928	0.027703142560725	1.28111162701928	515.878750022825	0	11.1555170170319						151	7	3	NaN	NaN	NaN	0.00091618	1	37072	45.587	43.963	1	25957			10302	1465	8681	8913	10302	10302		
ITAQSIEELCAVNLYGPDAQVDR	23	Unmodified	_ITAQSIEELCAVNLYGPDAQVDR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.754999	2561.24317	1.3215	0.0011295	1.1393	0.00097386	2.4608	0.0021034	855.090446685957	15.766	0.070951	15.766	15.73	15.801	0	450	82	1.02367897599655	0.0543499910710907	1.02367897599655	618.322119159434	0	32.8284574005811						440	9	4	NaN	NaN	NaN	1.1971E-06	1	37073	73.805	70.046	1	79066			10303	1465	8681	8913	10303	10303		
ITDGLHALQEASNK	14	Unmodified	_ITDGLHALQEASNK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.594967	1495.76307	-1.4693	-0.00073406	0.65851	0.00032899	-0.81081	-0.00040507	499.595387103049	6.9683	0.1064	6.9683	6.9239	7.0303	0	789	43	0.794378096728713	0.0286363621656089	0.794378096728713	481.659433833064	0	17.3632355228901						310	13	4	NaN	NaN	NaN	0.0017476	1	18418	31.801	26.972	1	92879			10304	423	8682	8914	10304	10304		
ITDGLHALQEASNK	14	Unmodified	_ITDGLHALQEASNK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.888812	1495.76307	1.932	0.0014469	0.46622	0.00034915	2.3982	0.001796	748.889118842374	6.9683	0.12412	6.9683	6.9239	7.0481	0	405	40	1.05384839605172	0.026117980429907	1.05384839605172	425.992908932065	0	10.5575664397755						341	15	4	NaN	NaN	NaN	7.0823E-08	1	18419	132.9	117.75	1	110110			10305	423	8682	8914	10305	10305		
ITDLANLSAANHDAAIFPGGFGAAK	25	Unmodified	_ITDLANLSAANHDAAIFPGGFGAAK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.751917	2441.23392	0.86122	0.00070168	-0.29329	-0.00023896	0.56793	0.00046272	815.086271627553	14.737	0.15077	14.737	14.657	14.808	0	468	91	1.01159370163332	0.0604598348511052	1.01159370163332	611.184459037565	0	36.5286096555466						862	18	4	NaN	NaN	NaN	1.6702E-06	1	36540	61.211	54.222	1	185510			10306	0	8683	8915	10306	10306		
ITDLANLSAANHDAAIFPGGFGAAK	25	Unmodified	_ITDLANLSAANHDAAIFPGGFGAAK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.751917	2441.23392	1.4514	0.0011826	2.2718	0.001851	3.7233	0.0030336	815.422021500044	14.746	0.12417	14.746	14.684	14.808	0	342	103	1.09598084995137	0.0681252568097204	1.09598084995137	662.169458031241	0	41.1599020018765						828	15	4	NaN	NaN	NaN	0.023932	1	36541	15.78	15.566	1	163390			10307	0	8683	8915	10307	10307		
ITDSAGHILYSK	12	Unmodified	_ITDSAGHILYSK_			0	0	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.845884	1303.67722	1.6364	0.0010683	0.065155	4.2536E-05	1.7016	0.0011109	652.845947073387	5.4342	0.31036	5.4342	5.381	5.6913	0	510	49	0.983355730988811	0.0323032171840146	0.983355730988811	398.0344032757	0	13.0754226273696						610	35	4	NaN	NaN	NaN	8.2977E-08	1	12470	168.69	156.73	1	295440			10308	1146	8684	8916	10308	10308		
ITDVLDQK	8	Unmodified	_ITDVLDQK_			0	0	0	Q96T51	Q96T51	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.258382	930.502212	-0.89773	-0.00041857	-1.9736	-0.00092021	-2.8713	-0.0013388	466.257939643067	5.913	0.14194	5.913	5.8509	5.9929	0	753	31	0.81889964927511	0.0204175783261862	0.81889964927511	332.857426940071	0	8.29911527257053						217	17	4	NaN	NaN	NaN	0.015784	1	2886	45.489	12.094	1	45948			10309	2629	8685	8917	10309	10309		
ITEDYYVHLIADNLPVATR	19	Unmodified	_ITEDYYVHLIADNLPVATR_			0	0	0	Q92544	Q92544	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.051304	2202.13208	-0.8657	-0.00063633	-0.40443	-0.00029728	-1.2701	-0.00093361	735.38533662837	17.264	0.12415	17.264	17.211	17.335	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	551.665337367111	0	11.0391533986806						328	15	4	NaN	NaN	NaN	3.1979E-07	1	34707	64.21	59.612	1	79177			10310	2411	8686	8918	10310	10310		
ITEFCHR	7	Unmodified	_ITEFCHR_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.729269	961.443985	0.76551	0.00036877	0.80558	0.00038807	1.5711	0.00075684	481.729337384882	2.7208	0.27492	2.7208	2.6409	2.9158	0	753	37	0.81889964927511	0.0245045030583653	0.81889964927511	332.701495320744	0	9.95565795739037						467	32	3	NaN	NaN	NaN	0.0094774	1	3467	75.915	37.593	1	134840			10311	554	8687	8919	10311	10311		
ITENIGCVMTGMTADSR	17	Unmodified	_ITENIGCVMTGMTADSR_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.420978	1854.8274	1.9998	0.0018566	1.1882	0.0011031	3.1879	0.0029598	928.422555062312	12.263	0.19508	12.263	12.21	12.405	0	309	64	1.11800162319566	0.0419933988669257	1.11800162319566	451.122354342076	0	16.9446632014041						822	23	5	NaN	NaN	NaN	1.0512E-25	1	28587	226.09	206.53	1	332820			10312	1314	8688	8920	10312	10312		
ITENSIVENLK	11	Unmodified	_ITENSIVENLK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.345717	1258.67688	1.3928	0.00087798	-1.9552	-0.0012324	-0.56231	-0.00035445	630.344627011612	9.5849	0.15071	9.5849	9.5406	9.6913	0	522	43	0.975277694896658	0.0282887809416775	0.975277694896658	394.912611373131	0	11.4547850450164						279	18	2	NaN	NaN	NaN	0.00034715	1	11177	104.39	60.66	1	120920			10313	1611	8689	8921	10313	10313		
ITESEEVVSR	10	Unmodified	_ITESEEVVSR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.793318	1147.57208	1.7872	0.0010273	0.82538	0.00047442	2.6126	0.0015017	574.793889100206	4.1573	0.38132	4.1573	4.0864	4.4677	0	651	52	0.888155670855968	0.0345487443998951	0.888155670855968	360.012445884568	0	14.0042769322857						900	44	4	NaN	NaN	NaN	3.5858E-07	1	8002	139.02	104.09	1	832570			10314	493	8690	8922	10314	10314		
ITESSLVEITEHK	13	Unmodified	_ITESSLVEITEHK_			0	0	0	Q99590	Q99590	Q99590	SCAF11	Protein SCAF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.931356	1484.77224	-1.1021	-0.00054657	-1.2117	-0.0006009	-2.3138	-0.0011475	495.930421306189	9.044	0.097556	9.044	9.0085	9.106	0	759	34	0.814815566123307	0.0224608985391257	0.814815566123307	494.084881327642	0	13.6197574648896						179	12	3	NaN	NaN	NaN	0.0082156	1	18059	56.202	37.866	1	33086			10315	2654	8691	8923	10315	10315		
ITESVAETAQTIK	13	Unmodified	_ITESVAETAQTIK_			0	0	0	Q96A49	Q96A49	Q96A49	SYAP1	Synapse-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.874839	1389.73512	2.1469	0.001494	-0.13456	-9.3638E-05	2.0124	0.0014004	695.874994493515	6.9505	0.13299	6.9505	6.9151	7.0481	0	423	97	1.04178812298108	0.0644370698614799	1.04178812298108	421.412245012681	0	26.0653482923788						600	16	4	NaN	NaN	NaN	0.0025004	1	15151	79.311	59.077	1	190430			10316	2470	8692	8924	10316	10316		
ITEYLCEPLRK	11	Unmodified	_ITEYLCEPLRK_			0	0	1	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.586755	1420.73844	-1.6892	-0.00080167	0.37898	0.00017986	-1.3102	-0.00062181	474.587177885706	7.6068	0.1508	7.6068	7.5713	7.7221	0	792	31	0.792332785124922	0.0204573895443732	0.792332785124922	480.651476826645	0	12.4100310893618						320	18	4	NaN	NaN	NaN	0.0021558	1	16116	53.517	48.021	1	124470			10317	1423;1587	8693	8925	10317	10317		
ITEYLCEPLRK	11	Unmodified	_ITEYLCEPLRK_			0	0	1	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.376494	1420.73844	1.8359	0.001306	0.1996	0.00014199	2.0355	0.001448	711.376672611304	7.6068	0.15967	7.6068	7.5713	7.7309	0	453	49	1.02166545906632	0.0322185054318638	1.02166545906632	413.183598295511	0	13.02986010529						367	19	4	NaN	NaN	NaN	7.4183E-07	1	16118	131.22	106.4	1	107740			10318	1423;1587	8693	8925	10318	10318		
ITFDAFPGEPDK	12	Unmodified	_ITFDAFPGEPDK_			0	0	0	Q12904	Q12904	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.824618	1335.63468	1.0376	0.00069395	0.09366	6.2642E-05	1.1312	0.00075659	668.824917896973	12.254	0.23057	12.254	12.148	12.378	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	392.212692870964	0	9.8136025999213						530	27	4	NaN	NaN	NaN	0.0076537	1	13457	41.824	35.958	1	234470			10319	1604	8694	8926	10319	10319		
ITFHGEGDQEPGLEPGDIIIVLDQK	25	Unmodified	_ITFHGEGDQEPGLEPGDIIIVLDQK_			0	0	0	P31689	P31689	P31689	DNAJA1	DnaJ homolog subfamily A member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	907.464102	2719.37048	0.38429	0.00034873	0.37945	0.00034433	0.76373	0.00069306	907.798808691277	17.326	0.15963	17.326	17.255	17.415	0	489	88	0.997481546940468	0.0584566175902572	0.997481546940468	602.309243607988	0	35.2978571209304						1203	19	5	NaN	NaN	NaN	4.549E-18	1	37662	97.525	94.297	1	288060			10320	926	8695	8927	10320	10320		
ITGEAFVQFASQELAEK	17	Unmodified	_ITGEAFVQFASQELAEK_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.319391	1866.93634	-0.50494	-0.00031474	0.69804	0.0004351	0.1931	0.00012036	623.654199114931	17.468	0.070929	17.468	17.433	17.504	0	648	28	0.890187667287968	0.0182854326605286	0.890187667287968	538.768392937144	0	11.0668946905175						186	9	4	NaN	NaN	NaN	0.02464	1	28867	26.517	24.38	1	35554			10321	1217	8696	8928	10321	10321		
ITGEAFVQFASQELAEK	17	Unmodified	_ITGEAFVQFASQELAEK_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.475448	1866.93634	1.5516	0.00145	1.7326	0.0016191	3.2843	0.0030691	934.978635096996	17.468	0.3192	17.468	17.388	17.708	0	189	76	1.1977968526266	0.0497590341763592	1.1977968526266	483.297077589628	0	20.0771906758496						1604	37	6	NaN	NaN	NaN	3.138E-26	1	28868	238.01	211.54	1	1217200			10322	1217	8696	8928	10322	10322		
ITGMLLEIDNSELLHMLESPESLR	24	Unmodified	_ITGMLLEIDNSELLHMLESPESLR_			0	0	0	P11940;Q13310	P11940;Q13310	P11940	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	914.134711	2739.3823	0.21926	0.00020043	-1.8277	-0.0016708	-1.6085	-0.0014703	914.800502936465	20.004	0.035474	20.004	19.978	20.013	0	504	76	0.987393073566096	0.0504075528298491	0.987393073566096	596.195370978771	0	30.4364598700137						136	5	5	NaN	NaN	NaN	0.00012504	1	37731	29.291	27.556	1	23645			10323	661;1653	8697	8929	10323	10323		
ITHEVDELTQIIADVSQDPTLPR	23	Unmodified	_ITHEVDELTQIIADVSQDPTLPR_			0	0	0	P36954	P36954	P36954	POLR2I	DNA-directed RNA polymerase II subunit RPB9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	864.116813	2589.32861	0.70889	0.00061257	0.627	0.0005418	1.3359	0.0011544	864.451873783427	19.215	0.070939	19.215	19.188	19.259	0	414	31	1.04781950764076	0.0201032305459359	1.04781950764076	632.866423786463	0	12.1420335557669						176	9	4	NaN	NaN	NaN	0.025809	1	37199	25.511	25.469	1	37733			10324	995	8698	8930	10324	10324		
ITHSPLTICFPEYTGANK	18	Unmodified	_ITHSPLTICFPEYTGANK_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.67518	2048.00371	-0.3379	-0.00023101	-0.22521	-0.00015397	-0.56311	-0.00038498	683.675102178203	12.556	0.15073	12.556	12.467	12.618	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	529.810523665015	0	12.3013320166233						422	18	4	NaN	NaN	NaN	8.0406E-05	1	32503	62.454	57.637	1	86971			10325	520	8699	8931	10325	10325		
ITIAAYLPLK	10	Unmodified	_ITIAAYLPLK_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.847167	1101.67978	0.035567	1.9628E-05	-2.1442	-0.0011832	-2.1086	-0.0011636	551.845794820573	15.437	0.13312	15.437	15.375	15.508	0	642	58	0.894250814548268	0.0385865321490887	0.894250814548268	362.662345055133	0	15.6487218228622						361	16	3	NaN	NaN	NaN	0.0094238	1	6774	33.426	30.827	1	88741			10326	2354	8700	8932	10326	10326		
ITISPLQELTLYNPER	16	Unmodified	_ITISPLQELTLYNPER_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.014741	1886.01493	1.8213	0.0017193	-2.6666	-0.0025173	-0.84534	-0.00079801	944.013005908617	17.672	0.18618	17.672	17.583	17.77	0	246	121	1.1599488233373	0.0797185008750183	1.1599488233373	467.990931672708	0	32.163087496148						1246	22	4	NaN	NaN	NaN	2.2657E-06	1	29289	103.23	101.25	1	375610			10327	78	8701	8933	10327	10327		
ITISSLQDLTLYNPER	16	Unmodified	_ITISSLQDLTLYNPER_			0	0	0	Q9NZI8	Q9NZI8	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.996548	1861.97854	1.0479	0.00097664	-4.0081	-0.0037356	-2.9602	-0.0027589	931.99090153741	16.599	0.11527	16.599	16.546	16.661	0	240	31	1.16393748060522	0.0199460300258694	1.16393748060522	469.644458450747	0	8.04814917109718						193	14	3	NaN	NaN	NaN	3.9253E-09	1	28739	141.88	126.26	1	59250			10328	3132	8702	8934	10328	10328		
ITITNDK	7	Unmodified	_ITITNDK_			0	0	0	P0DMV8;P0DMV9;P17066;P11142;P54652	P0DMV8;P17066;P11142	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA8;HSPA2	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	402.726718	803.438883	-0.51284	-0.00020653	0.69165	0.00027855	0.17881	7.2013E-05	402.727104170016	3.0134	0.133	3.0134	2.9779	3.1109	0	852	31	0.751366682244005	0.0205144650088798	0.751366682244005	306.109103183051	0	8.35765630090714						213	16	2	NaN	NaN	NaN	0.030925	1	1016	53.679	18.046	1	61344			10329	618;640;734	8703	8935	10329	10329		
ITITNDQNR	9	Unmodified	_ITITNDQNR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.780544	1073.54654	1.7338	0.00093239	-0.14672	-7.8906E-05	1.587	0.00085348	537.780546108945	3.4124	0.5055	3.4124	3.3503	3.8558	0	681	67	0.867820189810857	0.0447815756398717	0.867820189810857	352.057345306362	0	18.1669922220241						677	58	5	NaN	NaN	NaN	1.4847E-08	1	6041	142.36	113.26	1	970250			10330	638	8704	8936	10330	10330		
ITLDNAYMEK	10	Unmodified	_ITLDNAYMEK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.294639	1196.57472	1.6806	0.0010072	1.0199	0.00061124	2.7005	0.0016184	599.295432342905	8.5205	0.55899	8.5205	8.3785	8.9375	0	537	103	0.965173861991602	0.0687870277476195	0.965173861991602	391.041348027878	0	27.8691468102503						2026	64	6	NaN	NaN	NaN	3.7813E-05	1	9341	108.3	90.907	1	3141000			10331	699	8705	8937	10331	10331		
ITLDNAYMEK	10	Oxidation (M)	_ITLDNAYM(Oxidation (M))EK_	ITLDNAYM(1)EK	ITLDNAYM(130)EK	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.292096	1212.56964	1.4894	0.00090451	1.9338	0.0011744	3.4233	0.0020789	607.293556261469	6.6491	0.22169	6.6491	6.5781	6.7998	0	564	49	0.946969335010767	0.0323882634734276	0.946969335010767	383.608058705621	0	13.1201702278422						737	26	5	NaN	NaN	NaN	5.5474E-05	1	9800	134.66	113.38	1	465080			10332	699	8705	8938	10332	10332	224	
ITLEGPTEDVNVAQEQIEGMVK	22	Unmodified	_ITLEGPTEDVNVAQEQIEGMVK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1200.60178	2399.18901	0.40791	0.00048973	-1.5923	-0.0019117	-1.1844	-0.0014219	1201.10139309809	16.581	0.15962	16.581	16.51	16.67	0	63	37	1.28111162701928	0.0237422986363811	1.28111162701928	516.066910829733	0	9.5640492638272						444	19	4	NaN	NaN	NaN	1.0197E-05	1	36339	43.904	42.056	1	86874			10333	1498	8706	8939	10333	10333		
ITLEGPTEDVNVAQEQIEGMVK	22	Unmodified	_ITLEGPTEDVNVAQEQIEGMVK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.736945	2399.18901	0.4257	0.00034087	2.1283	0.0017042	2.554	0.0020451	801.072601853268	16.564	0.1064	16.564	16.519	16.626	0	483	34	1.00151498427745	0.0221823754430851	1.00151498427745	605.155092460291	0	13.4034714137939						285	13	4	NaN	NaN	NaN	4.2809E-06	1	36340	78.71	74.113	1	44399			10334	1498	8706	8939	10334	10334		
ITLESFLAWK	10	Unmodified	_ITLESFLAWK_			0	0	0	Q8WU90	Q8WU90	Q8WU90	ZC3H15	Zinc finger CCCH domain-containing protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.339707	1206.66486	-0.054165	-3.2734E-05	-1.9889	-0.001202	-2.043	-0.0012347	604.338032418206	18.426	0.097587	18.426	18.39	18.488	0	600	31	0.922661313351899	0.0202735302015807	0.922661313351899	373.781713983095	0	8.21306232045811						200	12	3	NaN	NaN	NaN	0.00071012	1	9656	67.507	51.05	1	54970			10335	2364	8707	8940	10335	10335		
ITLETDEDMVTEIR	14	Unmodified	_ITLETDEDMVTEIR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.90601	1663.79747	2.6525	0.0022093	8.4822	0.0070649	11.135	0.0092742	833.416274551613	13.017	0.3015	13.017	12.839	13.141	0	345	64	1.09397730668811	0.0420918249195401	1.09397730668811	441.80434651917	0	16.9988454867267						594	35	3	NaN	NaN	NaN	0.063036	1	23451	36.46	31.631	1	154530			10336	1841	8708	8941	10336	10336		
ITLPVDFVTADK	12	Unmodified	_ITLPVDFVTADK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.866285	1317.71802	1.1498	0.00075871	1.4612	0.0009642	2.611	0.0017229	659.867652029934	15.225	0.31932	15.225	15.154	15.473	0	531	82	0.969216233931596	0.0545909511929964	0.969216233931596	392.267295135233	0	22.0943934012228						1877	37	5	NaN	NaN	NaN	0.00023161	1	12911	103.87	80.82	1	2934000			10337	484	8709	8942	10337	10337		
ITLQDVVSHSK	11	Unmodified	_ITLQDVVSHSK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	409.562827	1225.66665	-1.3659	-0.0005594	-1.3816	-0.00056585	-2.7474	-0.0011252	409.562396236902	8.8665	0.18636	8.8665	8.8133	8.9996	0	861	34	0.745211914437924	0.0225706313998035	0.745211914437924	452.75855881343	0	13.7129403678306						546	22	4	NaN	NaN	NaN	0.0032093	1	10176	55.235	51.627	1	347340			10338	1095	8710	8943	10338	10338		
ITLQDVVSHSK	11	Unmodified	_ITLQDVVSHSK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.840602	1225.66665	1.3391	0.000822	0.25678	0.00015762	1.5959	0.00097963	613.840995871053	8.8665	0.19521	8.8665	8.8221	9.0174	0	510	55	0.983355730988811	0.0363612334890161	0.983355730988811	398.299936066996	0	14.7278106158279						437	23	4	NaN	NaN	NaN	1.3742E-05	1	10179	116.13	98.662	1	142120			10339	1095	8710	8943	10339	10339		
ITLVSAAPGK	10	Unmodified	_ITLVSAAPGK_			0	0	0	Q9NPJ3	Q9NPJ3	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.792392	955.570232	-0.44407	-0.00021262	-0.82895	-0.0003969	-1.273	-0.00060951	478.792009375488	6.6668	0.20396	6.6668	6.6225	6.8264	0	753	43	0.81889964927511	0.0285885886986983	0.81889964927511	332.730332043666	0	11.6159417320522						419	24	3	NaN	NaN	NaN	0.00046955	1	3351	79.059	52.836	1	207230			10340	2991	8711	8944	10340	10340		
ITMIAEPLEK	10	Unmodified	_ITMIAEPLEK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.81775	1143.62095	1.0355	0.00059316	-1.5574	-0.00089212	-0.52192	-0.00029896	573.318069208802	10.037	0.2394	10.037	9.9662	10.206	0	612	64	0.914549654013882	0.0425950882800211	0.914549654013882	370.726421125549	0	17.2665579897965						418	28	2	NaN	NaN	NaN	0.0043715	1	7899	55.235	45.147	1	158510			10341	1796	8712	8945	10341	10341		
ITNDFYPEEDGK	12	Unmodified	_ITNDFYPEEDGK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.319896	1426.62524	1.8887	0.0013491	1.4879	0.0010628	3.3766	0.002412	714.321352375531	7.4915	0.22167	7.4915	7.4472	7.6688	0	492	100	0.995464410099171	0.0665932150866403	0.995464410099171	402.571306324577	0	26.930664037614						1191	26	5	NaN	NaN	NaN	0.00041453	1	16269	81.799	61.616	1	520940			10342	1280	8713	8946	10342	10342		
ITNLTQQLEQASIVK	15	Unmodified	_ITNLTQQLEQASIVK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.475251	1684.93595	2.1784	0.0018374	1.0369	0.00087463	3.2153	0.0027121	843.476010851643	13.451	0.11527	13.451	13.407	13.522	0	348	61	1.09197348738011	0.0400626050188091	1.09197348738011	440.949430573713	0	16.1776664676421						398	14	4	NaN	NaN	NaN	8.0201E-25	1	24062	212.78	180.23	1	148440			10343	718	8714	8947	10343	10343		
ITNNINVLIK	10	Unmodified	_ITNNINVLIK_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.350606	1140.68666	0.67793	0.00038734	0.71291	0.00040732	1.3908	0.00079466	571.35089427556	10.259	0.12413	10.259	10.214	10.339	0	600	37	0.922661313351899	0.0243282375267269	0.922661313351899	374.026055491749	0	9.86211797060315						252	15	3	NaN	NaN	NaN	0.00095772	1	7821	60.892	40.658	1	83418			10344	2816	8715	8948	10344	10344		
ITNSLTVLCSEK	12	Unmodified	_ITNSLTVLCSEK_			0	0	0	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.858135	1363.70172	1.7623	0.0012034	-0.84713	-0.00057847	0.91513	0.0006249	682.858298297989	9.1592	0.25723	9.1592	9.0883	9.3455	0	483	52	1.00151498427745	0.0342913380961678	1.00151498427745	405.197596291173	0	13.8737492581797						739	30	5	NaN	NaN	NaN	0.00067011	1	14303	61.194	56.667	1	342870			10345	363	8716	8949	10345	10345		
ITPAHDQNDYEVGQR	15	Unmodified	_ITPAHDQNDYEVGQR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.908264	1741.80198	3.9369	0.0034326	-3.2455	-0.0028298	0.69136	0.0006028	871.905388345899	3.8736	0.053193	3.8736	3.847	3.9002	-8.8818E-16	366	61	1.07994477139643	0.040134443533411	1.07994477139643	435.9759705534	0	16.202359079413						263	7	3	NaN	NaN	NaN	0.0028701	1	25649	61.042	57.754	1	48567			10346	858	8717	8950	10346	10346		
ITPAHDQNDYEVGQR	15	Unmodified	_ITPAHDQNDYEVGQR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.607935	1741.80198	0.56258	0.0003272	1.6884	0.00098199	2.251	0.0013092	581.608954582593	3.8736	0.14188	3.8736	3.8381	3.98	0	771	43	0.806643990516186	0.0286084797705708	0.806643990516186	488.463559423513	0	17.3238752445006						398	17	5	NaN	NaN	NaN	2.2463E-06	1	25650	112.73	103.92	1	132710			10347	858	8717	8950	10347	10347		
ITPENLPQILLQLK	14	Unmodified	_ITPENLPQILLQLK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.490173	1618.96579	1.5481	0.0012547	-0.13326	-0.00010801	1.4148	0.0011467	810.489851129213	19.215	0.19506	19.215	19.135	19.33	0	360	82	1.08395544855938	0.0541553837455577	1.08395544855938	437.857141036584	0	21.8757344041064						1324	23	5	NaN	NaN	NaN	1.181E-07	1	22165	124.46	95.139	1	867070			10348	1062	8718	8951	10348	10348		
ITPFNLQEEMEEGHFDADGNYFLNR	25	Unmodified	_ITPFNLQEEMEEGHFDADGNYFLNR_			0	0	0	O95400	O95400	O95400	CD2BP2	CD2 antigen cytoplasmic tail-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	996.115255	2985.32394	0.38651	0.00038501	0.061699	6.1459E-05	0.44821	0.00044647	996.449791929766	17.043	0.062049	17.043	17.016	17.078	0	423	34	1.04178812298108	0.0221181322684503	1.04178812298108	628.777711058048	0	13.3495365073269						223	8	5	NaN	NaN	NaN	0.043516	1	38197	7.868	7.7047	1	36548			10349	433	8719	8952	10349	10349		
ITPSYVAFTPEGER	14	Unmodified	_ITPSYVAFTPEGER_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.893563	1565.77257	2.5512	0.0019998	-1.0247	-0.00080328	1.5264	0.0011965	783.893302629987	10.729	0.32808	10.729	10.622	10.95	0	417	124	1.04580932352505	0.0824518431909262	1.04580932352505	422.569981425443	0	33.3155127439908						1658	38	5	NaN	NaN	NaN	0.00020862	1	20527	97.175	82.027	1	1382600			10350	638	8720	8953	10350	10350		
ITPSYVAFTPEGER	14	Unmodified	_ITPSYVAFTPEGER_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.893563	1565.77257	2.8803	0.0022579	1.6223	0.0012717	4.5026	0.0035296	783.895175593036	10.729	0.28376	10.729	10.64	10.924	0	309	70	1.11800162319566	0.0460244415732745	1.11800162319566	451.740009908049	0	18.5966471434048						1730	33	6	NaN	NaN	NaN	7.6738E-17	1	20528	184.27	153.35	1	2220200			10351	638	8720	8953	10351	10351		
ITQDIFQQLLK	11	Unmodified	_ITQDIFQQLLK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.887552	1345.76055	0.97661	0.00065813	0.11083	7.4686E-05	1.0874	0.00073281	673.88781480417	16.608	0.27488	16.608	16.519	16.794	0	468	46	1.01159370163332	0.0302278047766038	1.01159370163332	409.330035844609	0	12.231341884329						773	32	5	NaN	NaN	NaN	1.9935E-11	1	13789	170.69	141.38	1	473210			10352	1284	8721	8954	10352	10352		
ITQDTLYWNNYK	12	Unmodified	_ITQDTLYWNNYK_			0	0	0	Q8TED0	Q8TED0	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.880456	1557.74636	1.7258	0.0013459	0.6541	0.00051012	2.3799	0.001856	779.879994744616	10.321	0.14188	10.321	10.206	10.347	0	405	34	1.05384839605172	0.0221059271192692	1.05384839605172	425.837476828367	0	8.93252982372934						259	17	4	NaN	NaN	NaN	5.6572E-06	1	20288	99.174	83.295	1	75065			10353	2352	8722	8955	10353	10353		
ITQEDIEGILQK	12	Unmodified	_ITQEDIEGILQK_			0	0	0	Q8WWH5	Q8WWH5	Q8WWH5	TRUB1	Probable tRNA pseudouridine synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.877382	1385.74021	1.0127	0.00070271	-6.6362	-0.0046047	-5.6235	-0.003902	693.8722918816	12.99	0.13301	12.99	12.928	13.061	0	489	31	0.997481546940468	0.0201699767195437	0.997481546940468	403.501339207607	0	8.15916108231312						253	16	3	NaN	NaN	NaN	6.8149E-05	1	15017	85.821	52.395	1	81113			10354	2388	8723	8956	10354	10354		
ITQLLSGEQNEQVK	14	Unmodified	_ITQLLSGEQNEQVK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.922852	1585.83115	3.1192	0.0024764	-1.5825	-0.0012564	1.5367	0.00122	793.92164444767	7.3408	0.15073	7.3408	7.2964	7.4472	0	339	64	1.09798411722691	0.0420860255773043	1.09798411722691	443.602549581372	0	17.0034046530573						581	18	4	NaN	NaN	NaN	1.107E-07	1	21143	128.57	115.39	1	206260		+	10355	22	8724	8957	10355	10355		
ITQLVSDQANHVLAR	15	Unmodified	_ITQLVSDQANHVLAR_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.640799	1663.90057	0.28187	0.00015662	0.14893	8.2753E-05	0.4308	0.00023937	555.640733746743	8.2011	0.10646	8.2011	8.1656	8.2721	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	523.237039649655	0	11.0983830259362						152	13	2	NaN	NaN	NaN	2.4056E-06	1	23462	108.2	85.298	1	82822			10356	2140	8725	8958	10356	10356		
ITQLVSDQANHVLAR	15	Unmodified	_ITQLVSDQANHVLAR_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.95756	1663.90057	2.7609	0.0022997	-1.8016	-0.0015007	0.95922	0.00079899	832.955927991488	8.2011	0.079799	8.2011	8.1656	8.2454	0	261	34	1.14997238118939	0.0219572303185152	1.14997238118939	464.417841644449	0	8.86745601878556						194	10	3	NaN	NaN	NaN	2.1528E-07	1	23463	91.245	82.87	1	51858			10357	2140	8725	8958	10357	10357		
ITQQGTDPLVLAVQSK	16	Unmodified	_ITQQGTDPLVLAVQSK_			0	0	0	Q8N556	Q8N556	Q8N556	AFAP1	Actin filament-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.475251	1696.93595	1.5949	0.0013548	0.23105	0.00019627	1.8259	0.0015511	849.475591477952	11.607	0.21287	11.607	11.491	11.704	0	318	40	1.11199926528787	0.0260209682813848	1.11199926528787	449.010131389148	0	10.5069119662348						484	25	3	NaN	NaN	NaN	2.7657E-12	1	24419	142.03	115.56	1	135040			10358	2255	8726	8959	10358	10358		
ITSAPDMEDILTESEIK	17	Unmodified	_ITSAPDMEDILTESEIK_			0	0	0	Q99598	Q99598	Q99598	TSNAX	Translin-associated protein X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.463889	1890.91322	1.9388	0.001835	1.2469	0.0011802	3.1857	0.0030152	946.46564550019	15.464	0.12427	15.464	15.411	15.535	0	207	43	1.18585551256002	0.0278746128945804	1.18585551256002	478.434135127371	0	11.2460296983726						418	15	4	NaN	NaN	NaN	0.0015283	1	29390	46.358	42.853	1	85962			10359	2656	8727	8960	10359	10359		
ITSAVWGPLGECIIAGHESGELNQYSAK	28	Unmodified	_ITSAVWGPLGECIIAGHESGELNQYSAK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	996.490434	2986.44947	1.9913	0.0019843	0.69571	0.00069327	2.687	0.0026775	996.825626101373	15.411	0.10652	15.411	15.367	15.473	0	390	109	1.06389100039157	0.0721724038372402	1.06389100039157	642.116915891645	0	43.5600276225651						903	13	4	NaN	NaN	NaN	0.016766	1	38201	14.408	12.46	1	149760			10360	1655	8728	8961	10360	10360		
ITSCIFQLLQEAGIK	15	Unmodified	_ITSCIFQLLQEAGIK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.968748	1719.92294	2.5496	0.0021951	-1.4094	-0.0012134	1.1403	0.00098173	860.967950883977	19.791	0.14187	19.791	19.738	19.88	0	309	118	1.11800162319566	0.077944923835142	1.11800162319566	451.384927135321	0	31.4696893420667						905	17	5	NaN	NaN	NaN	1.4876E-17	1	25070	199.51	169.16	1	550230			10361	802	8729	8962	10361	10361		
ITSEAEDLVANFFPK	15	Unmodified	_ITSEAEDLVANFFPK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.927603	1679.84065	1.9001	0.0015979	-1.6628	-0.0013983	0.23734	0.00019958	840.926226611772	18.568	0.40793	18.568	18.364	18.772	0	351	61	1.08996939197032	0.0400902123733129	1.08996939197032	440.151057722326	0	16.189215504968						1587	47	4	NaN	NaN	NaN	3.2161E-12	1	23908	163.59	153.34	1	507540			10362	1340	8730	8963	10362	10362		
ITSEAEDLVANFFPK	15	Unmodified	_ITSEAEDLVANFFPK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.927603	1679.84065	1.2007	0.0010097	-0.17315	-0.00014561	1.0275	0.00086408	841.428822949414	18.594	0.22174	18.594	18.452	18.674	0	228	46	1.17191150690002	0.0299005515005901	1.17191150690002	473.240888069447	0	12.0744300764961						438	26	3	NaN	NaN	NaN	0.068671	1	23909	18.811	16.51	1	77237			10363	1340	8730	8963	10363	10363		
ITSEALLVTQQLVK	14	Unmodified	_ITSEALLVTQQLVK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.958706	1541.90286	2.2146	0.0017096	0.70736	0.00054606	2.922	0.0022557	771.959120683309	14.391	0.1596	14.391	14.347	14.506	0	282	73	1.13599383354359	0.047982557146417	1.13599383354359	459.072233974487	0	19.3904747108548						748	19	5	NaN	NaN	NaN	4.8399E-06	1	19797	119.55	101.82	1	385990			10364	2175	8731	8964	10364	10364		
ITSEIPQTER	10	Unmodified	_ITSEIPQTER_			0	0	0	P82979	P82979	P82979	SARNP	SAP domain-containing ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.309135	1172.60372	1.8816	0.0011051	-0.27764	-0.00016306	1.6039	0.000942	587.309220767562	4.8489	0.17725	4.8489	4.7958	4.9731	0	621	52	0.908462957275599	0.0344912931175532	0.908462957275599	368.150624492686	0	13.9774450890851						395	21	3	NaN	NaN	NaN	6.0945E-05	1	8675	115.86	100.28	1	257760			10365	1480	8732	8965	10365	10365		
ITSEMGSASQANIR	14	Unmodified	_ITSEMGSASQANIR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.859197	1463.70384	1.3032	0.00095504	-6.7315	-0.0049332	-5.4283	-0.0039782	732.852956938447	5.3455	0.12415	5.3455	5.31	5.4342	0	492	28	0.995464410099171	0.0181567430371361	0.995464410099171	402.473400189734	0	7.34090142489316						178	15	3	NaN	NaN	NaN	0.0010484	1	17383	71.896	61.808	1	51443			10366	2900	8733	8966	10366	10366		
ITSGPFEPDLYK	12	Unmodified	_ITSGPFEPDLYK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.848093	1365.68163	2.2354	0.0015287	0.87281	0.00059687	3.1082	0.0021255	683.849304954017	11.066	0.40791	11.066	10.915	11.323	0	465	118	1.01360860968299	0.0787119953011409	1.01360860968299	410.084518299238	0	31.8452017564605						2028	47	5	NaN	NaN	NaN	4.044E-05	1	14367	120.65	94.796	1	2072500			10367	3319	8734	8967	10367	10367		
ITSPLMEPSSIEK	13	Unmodified	_ITSPLMEPSSIEK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.373617	1430.73268	1.8834	0.0013492	1.6799	0.0012035	3.5634	0.0025527	716.373372345639	10.25	0.23941	10.25	10.152	10.392	0	435	91	1.03374239103424	0.0604097440648067	1.03374239103424	418.039608144187	0	24.4293606956339						1718	28	5	NaN	NaN	NaN	0.042758	1	16422	42.061	32.318	1	592280			10368	872	8735	8968	10368	10368		
ITSVAWSPHHDGR	13	Unmodified	_ITSVAWSPHHDGR_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.24438	1461.71131	0.64319	0.00031403	-1.8943	-0.00092491	-1.2512	-0.00061087	488.243088514029	4.3169	0.17735	4.3169	4.2371	4.4145	0	741	49	0.827064408645228	0.032640889258064	0.827064408645228	501.585248773071	0	19.7955423876827						287	21	3	NaN	NaN	NaN	0.0032865	1	17317	36.952	34.28	1	98590			10369	2355	8736	8969	10369	10369		
ITTTFGEHLNAVQASAEHQK	20	Unmodified	_ITTTFGEHLNAVQASAEHQK_			0	0	0	Q9BTX1	Q9BTX1	Q9BTX1	NDC1	Nucleoporin NDC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.034425	2181.08144	1.0775	0.00078448	0.60704	0.00044195	1.6846	0.0012264	728.368099485952	7.5447	0.097535	7.5447	7.5092	7.6068	0	462	40	1.01562323939346	0.0261938098951453	1.01562323939346	614.032970260412	0	15.8364463006558						182	12	4	NaN	NaN	NaN	0.0027516	1	34466	39.587	38.492	1	40318			10370	2740	8737	8970	10370	10370		
ITTVIQHVFQNLILGSK	17	Unmodified	_ITTVIQHVFQNLILGSK_			0	0	0	Q9H3R5	Q9H3R5	Q9H3R5	CENPH	Centromere protein H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.706921	1910.09893	-0.47413	-0.00030236	0.21093	0.00013451	-0.2632	-0.00016784	638.041135469155	18.958	0.044379	18.958	18.94	18.984	0	642	19	0.894250814548268	0.0121877514530468	0.894250814548268	541.137412762082	0	7.37516609590182						89	6	3	NaN	NaN	NaN	0.0022578	1	29842	37.886	34.992	1	16513			10371	2884	8738	8971	10371	10371		
ITTVIQHVFQNLILGSK	17	Unmodified	_ITTVIQHVFQNLILGSK_			0	0	0	Q9H3R5	Q9H3R5	Q9H3R5	CENPH	Centromere protein H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.706921	1910.09893	-1.1076	-0.00070633	1.2283	0.00078332	0.12073	7.6992E-05	637.708224747485	18.958	0.035512	18.958	18.949	18.984	0	681	16	0.867820189810857	0.0101755056428254	0.867820189810857	525.143462180274	0	6.1574970546294						47	5	3	NaN	NaN	NaN	0.0015517	1	29843	40.53	35.976	1	6642.7			10372	2884	8738	8971	10372	10372		
ITVEDDVGGVQGK	13	Unmodified	_ITVEDDVGGVQGK_			0	0	0	Q96B01	Q96B01	Q96B01	RAD51AP1	RAD51-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.838256	1315.66196	1.2081	0.00079597	-1.6648	-0.0010968	-0.45666	-0.00030087	658.838106198138	6.5249	0.15962	6.5249	6.4363	6.5959	0	549	31	0.957085760909907	0.0202230534711471	0.957085760909907	387.364067827891	0	8.18493449222041						295	19	3	NaN	NaN	NaN	0.00040703	1	12842	74.849	60.086	1	76543			10373	2478	8739	8972	10373	10373		
ITVLEALR	8	Unmodified	_ITVLEALR_			0	0	0	Q5T9A4;Q9NVI7;Q5T2N8	Q5T9A4;Q9NVI7	Q9NVI7	ATAD3B;ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.78711	913.559667	-1.5273	-0.00069917	-3.47	-0.0015885	-4.9972	-0.0022877	457.785273655559	11.846	0.1685	11.846	11.784	11.953	0	729	37	0.835224628594324	0.0244772608396998	0.835224628594324	339.584631974392	0	9.95193547869854						235	20	3	NaN	NaN	NaN	0.032203	1	2578	51.43	26.579	1	56162			10374	3068;1996	8740	8973	10374	10374		
ITVLQLSALLK	11	Unmodified	_ITVLQLSALLK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.892106	1197.76966	-0.19038	-0.0001142	-0.87188	-0.00052304	-1.0623	-0.00063724	599.891331740877	18.328	0.070925	18.328	18.293	18.364	0	588	25	0.93076847747433	0.0162098367648951	0.93076847747433	377.097684574367	0	6.56736026122985						127	9	3	NaN	NaN	NaN	0.00049289	1	9409	57.293	47.779	1	30904			10375	1991	8741	8974	10375	10375		
ITVNEVELLVMK	12	Unmodified	_ITVNEVELLVMK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.396896	1386.77924	0.14427	0.00010018	0.12394	8.6061E-05	0.26821	0.00018624	694.397101736466	16.936	0.15077	16.936	16.874	17.025	0	447	61	1.02569221487577	0.0402620166528518	1.02569221487577	414.910022702473	0	16.2866735275994						518	18	4	NaN	NaN	NaN	0.00032114	1	15058	68.49	60.017	1	196520			10376	3300	8742	8975	10376	10376		
ITVPLVSEVQIAQLR	15	Unmodified	_ITVPLVSEVQIAQLR_			0	0	0	A0FGR8	A0FGR8	A0FGR8	ESYT2	Extended synaptotagmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.001445	1664.98251	-2.2925	-0.0012746	0.17838	9.9178E-05	-2.1141	-0.0011755	556.001501228489	17.06	0.10639	17.06	16.989	17.096	0	726	16	0.837263974740672	0.0101953139363458	0.837263974740672	507.189956286214	0	6.17602212169834						101	13	2	NaN	NaN	NaN	0.053421	1	23485	30.349	28.212	1	20589			10377	4	8743	8976	10377	10377		
ITVTFNINNSIPPTFDGEEEPSQGQK	26	Unmodified	_ITVTFNINNSIPPTFDGEEEPSQGQK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	954.797921	2861.37193	1.4099	0.0013462	-1.6288	-0.0015552	-0.21886	-0.00020897	955.131013042424	15.571	0.1862	15.571	15.544	15.73	0	474	40	1.00756305028564	0.0262082910405103	1.00756305028564	608.243145790418	0	15.8213556796784						171	22	2	NaN	NaN	NaN	3.5684E-06	1	38018	64.983	63.557	1	54077			10378	1566	8744	8977	10378	10378		
ITVTSEVPFSK	11	Unmodified	_ITVTSEVPFSK_			0	0	0	P35268	P35268	P35268	RPL22	60S ribosomal protein L22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.332079	1206.6496	1.2927	0.00078122	0.90455	0.00054665	2.1972	0.0013279	604.332830607126	9.9928	0.2394	9.9928	9.9396	10.179	0	588	73	0.93076847747433	0.048622803634308	0.93076847747433	377.066069783433	0	19.6977120647554						1041	28	4	NaN	NaN	NaN	1.8484E-07	1	9650	151.22	123.49	1	914460			10379	967	8745	8978	10379	10379		
ITVVGVGQVGMACAISILGK	20	Unmodified	_ITVVGVGQVGMACAISILGK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.368923	1972.08494	0.30317	0.0001996	-0.34697	-0.00022844	-0.043806	-2.884E-05	658.703175752671	19.561	0.20396	19.561	19.525	19.729	0	537	40	0.965173861991602	0.0262808772147128	0.965173861991602	583.922754958273	0	15.8997283601002						559	24	5	NaN	NaN	NaN	0.006072	1	31152	45.17	42.085	1	140190			10380	553	8746	8979	10380	10380		
ITVVGVGQVGMACAISILGK	20	Unmodified	_ITVVGVGQVGMACAISILGK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.049746	1972.08494	1.4204	0.001402	-1.1093	-0.0010949	0.31115	0.00030713	987.550512305344	19.561	0.26602	19.561	19.525	19.791	0	180	73	1.203763835057	0.0477326152978108	1.203763835057	485.513635889456	0	19.2519786097872						1139	31	5	NaN	NaN	NaN	6.1871E-16	1	31153	162.14	152.12	1	318340			10381	553	8746	8979	10381	10381		
IVAETMNNYLFGER	14	Unmodified	_IVAETMNNYLFGER_			0	0	0	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.906147	1655.79774	2.4847	0.0020596	-0.64557	-0.00053512	1.8392	0.0015245	828.905757341864	13.611	0.22168	13.611	13.46	13.682	0	378	76	1.07192009927972	0.0501369565243259	1.07192009927972	432.913817086801	0	20.2486932007764						601	26	4	NaN	NaN	NaN	6.8975E-06	1	23214	93.162	86.786	1	164230			10382	2801	8747	8980	10382	10382		
IVAIGTSDLDK	11	Unmodified	_IVAIGTSDLDK_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.316428	1130.6183	1.2217	0.00069185	-0.82019	-0.00046449	0.40147	0.00022736	566.316102294872	8.2366	0.10647	8.2366	8.21	8.3164	0	615	37	0.912521036363781	0.0243451033539596	0.912521036363781	369.954762984289	0	9.87000472562431						183	13	3	NaN	NaN	NaN	0.0047828	1	7553	36.514	23.24	1	114970			10383	1109	8748	8981	10383	10383		
IVAISEDYPR	10	Unmodified	_IVAISEDYPR_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.808771	1161.60299	1.3254	0.00077112	0.038625	2.2472E-05	1.364	0.00079359	581.808880911095	8.0237	0.15089	8.0237	7.9704	8.1213	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	382.977056965651	0	6.56332179309925						275	18	3	NaN	NaN	NaN	3.2942E-07	1	8384	96.311	80.729	1	88297			10384	1722	8749	8982	10384	10384		
IVALNAHTFLR	11	Unmodified	_IVALNAHTFLR_			0	0	0	P22087;A6NHQ2	P22087;A6NHQ2	P22087	FBL;FBLL1	rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.869497	1253.72444	1.794	0.0011264	1.3951	0.00087593	3.1891	0.0020023	627.870402236035	10.472	0.11531	10.472	10.436	10.551	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	407.186919025576	0	8.16312821426322						222	14	3	NaN	NaN	NaN	1.0879E-07	1	11043	138.26	119.86	1	68437			10385	800;15	8750	8983	10385	10385		
IVALSSSLSNAK	12	Unmodified	_IVALSSSLSNAK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.342978	1188.6714	1.6368	0.00097444	-2.8727	-0.0017102	-1.2359	-0.00073579	595.842356128577	7.8285	0.20396	7.8285	7.7487	7.9527	0	549	46	0.957085760909907	0.0303450838148018	0.957085760909907	387.793851243472	0	12.2952794822278						560	24	4	NaN	NaN	NaN	0.063565	1	9130	36.514	29.824	1	207660			10386	350	8751	8984	10386	10386		
IVAQVWPFLGQYMEK	15	Unmodified	_IVAQVWPFLGQYMEK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.973833	1807.93311	1.3334	0.0012067	-2.6603	-0.0024075	-1.3269	-0.0012008	904.972200546514	18.683	0.21279	18.683	18.577	18.789	0	276	58	1.13998907770044	0.0379678915865906	1.13998907770044	460.08303364345	0	15.3232895682133						950	25	4	NaN	NaN	NaN	0.0032397	1	27434	25.588	23.877	1	189260			10387	2726	8752	8985	10387	10387		
IVASMWDSLGEEQK	14	Unmodified	_IVASMWDSLGEEQK_			0	0	0	O94842;O15405;Q96NM4	O94842	O94842	TOX4;TOX3;TOX2	TOX high mobility group box family member 4;TOX high mobility group box family member 3;TOX high mobility group box family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.884881	1591.75521	1.32	0.0010519	2.9354	0.0023392	4.2554	0.0033911	796.88732682778	12.618	0.16846	12.618	12.511	12.68	0	396	43	1.05987478976334	0.0281173586506349	1.05987478976334	428.191978656275	0	11.3594809042413						426	20	3	NaN	NaN	NaN	0.00029399	1	21321	61.577	58.699	1	89930			10388	174	8753	8986	10388	10388		
IVASTLSNPELFEEWTGNVK	20	Unmodified	_IVASTLSNPELFEEWTGNVK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1117.57061	2233.12666	0.84334	0.0009425	0.59879	0.00066919	1.4421	0.0016117	1118.07282646178	17.211	0.16848	17.211	17.14	17.309	0	108	82	1.25141139212444	0.0535190750635874	1.25141139212444	504.318739471015	0	21.5681850457689						1134	20	6	NaN	NaN	NaN	5.4432E-11	1	35018	112.68	106.78	1	375820			10389	736	8754	8987	10389	10389		
IVAVTGAEAQK	11	Unmodified	_IVAVTGAEAQK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.811313	1085.60807	1.9565	0.001064	0.19874	0.00010807	2.1553	0.0011721	543.811549852109	4.113	0.21282	4.113	4.0686	4.2815	0	642	64	0.894250814548268	0.0426423617596632	0.894250814548268	362.728655072706	0	17.2967206499218						536	25	4	NaN	NaN	NaN	2.259E-07	1	6363	133.98	109.13	1	254050			10390	1136	8755	8988	10390	10390		
IVCDLIENK	9	Unmodified	_IVCDLIENK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.291899	1102.56925	0.64354	0.00035542	0.082665	4.5655E-05	0.7262	0.00040107	552.291961556834	7.6156	0.15079	7.6156	7.5536	7.7044	0	630	34	0.902373728295776	0.0223302721813649	0.902373728295776	365.952925669662	0	9.055924590362						237	18	2	NaN	NaN	NaN	0.054081	1	6790	40.502	29.8	1	89667			10391	1611	8756	8989	10391	10391		
IVDAVIQEHQPSVLLELGAYCGYSAVR	27	Unmodified	_IVDAVIQEHQPSVLLELGAYCGYSAVR_			0	0	0	P21964	P21964	P21964	COMT	Catechol O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	996.514691	2986.52224	1.0357	0.0010321	1.1578	0.0011537	2.1935	0.0021859	996.516624721802	16.661	0.09751	16.661	16.599	16.697	0	189	46	1.1977968526266	0.0298390153919159	1.1977968526266	722.936402353604	0	18.0094899981593						330	12	4	NaN	NaN	NaN	1.85E-06	1	38203	62.804	59.742	1	64075			10392	797	8757	8990	10392	10392		
IVDDCGGAFTMGTIGGGIFQAIK	23	Unmodified	_IVDDCGGAFTMGTIGGGIFQAIK_			0	0	0	Q99595	Q99595	Q99595	TIMM17A	Mitochondrial import inner membrane translocase subunit Tim17-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1164.57177	2327.12899	0.27439	0.00031954	-0.32669	-0.00038045	-0.052302	-6.091E-05	1165.07319882018	18.931	0.05319	18.931	18.905	18.958	0	93	46	1.26131825079847	0.0296961677825143	1.26131825079847	508.184222308553	0	11.964564788108						221	7	3	NaN	NaN	NaN	2.4367E-09	1	35873	58.045	24.545	1	42982			10393	2655	8758	8991	10393	10393		
IVDDWANDGWGLK	13	Unmodified	_IVDDWANDGWGLK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.859523	1487.70449	1.5293	0.0011391	2.8156	0.0020972	4.3449	0.0032364	744.86201659299	13.992	0.25715	13.992	13.93	14.187	0	432	94	1.035754240522	0.0623157787833888	1.035754240522	418.699562452344	0	25.1909075432145						1200	30	5	NaN	NaN	NaN	7.6856E-08	1	18162	119.94	102.47	1	1035900			10394	870	8759	8992	10394	10394		
IVDLNFLIGPK	11	Unmodified	_IVDLNFLIGPK_			0	0	0	P19447	P19447	P19447	ERCC3	TFIIH basal transcription factor complex helicase XPB subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.868631	1227.72271	-0.48921	-0.0003008	-2.1009	-0.0012917	-2.5901	-0.0015925	614.867250533053	16.883	0.07993	16.883	16.847	16.927	0	570	37	0.942920803299286	0.0242911943445451	0.942920803299286	381.914997190666	0	9.83875993338359						154	10	2	NaN	NaN	NaN	0.00040208	1	10246	65.404	54.044	1	37826			10395	769	8760	8993	10395	10395		
IVDPEIALK	9	Unmodified	_IVDPEIALK_			0	0	0	P33240	P33240	P33240	CSTF2	Cleavage stimulation factor subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.30005	996.585547	-0.52764	-0.00026345	-1.7049	-0.00085124	-2.2325	-0.0011147	499.299155360015	9.6824	0.13301	9.6824	9.6115	9.7445	0	735	37	0.831145085810763	0.0244772608396998	0.831145085810763	337.50865055458	0	9.93964521515625						277	16	3	NaN	NaN	NaN	0.068757	1	4221	29.31	19.916	1	76947			10396	945	8761	8994	10396	10396		
IVDRIDNDGDGFVTTEELK	19	Unmodified	_IVDRIDNDGDGFVTTEELK_			0	0	1	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.686691	2135.03824	1.6541	0.0011789	0.11933	8.5043E-05	1.7735	0.0012639	713.021108374201	10.534	0.12419	10.534	10.48	10.605	0	630	178	0.902373728295776	0.119407379429672	0.902373728295776	545.638134988641	0	72.2020353351104						1583	15	5	NaN	NaN	NaN	2.2132E-10	1	33815	173.15	160.98	1	554300			10397	1831	8762	8995	10397	10397		
IVEANPLLEAFGNAK	15	Unmodified	_IVEANPLLEAFGNAK_			0	0	0	Q9UM54	Q9UM54	Q9UM54	MYO6	Unconventional myosin-VI	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.432855	1584.85116	1.3975	0.0011088	-7.8535	-0.0062312	-6.456	-0.0051224	793.429413921712	16.085	0.18623	16.085	16.014	16.2	0	375	25	1.07392668217569	0.0160471329064824	1.07392668217569	433.885320349443	0	6.48332471609092						168	22	2	NaN	NaN	NaN	0.0044244	1	21108	73.891	60.617	1	102140			10398	3286	8763	8996	10398	10398		
IVEDDASISSCNK	13	Unmodified	_IVEDDASISSCNK_			0	0	0	Q7Z5K2	Q7Z5K2	Q7Z5K2	WAPAL	Wings apart-like protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.329938	1436.64532	2.4285	0.0017469	-1.0448	-0.00075159	1.3836	0.00099529	719.328970773517	4.4145	0.088663	4.4145	4.3879	4.4765	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	400.912642564857	0	9.79162514371882						147	11	3	NaN	NaN	NaN	0.00039748	1	16576	65.879	63.4	1	29798			10399	2145	8764	8997	10399	10399		
IVEDEPNK	8	Unmodified	_IVEDEPNK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.24019	942.465826	-0.51936	-0.00024526	1.1383	0.00053754	0.61891	0.00029227	472.240479698322	2.2774	0.30147	2.2774	2.171	2.4724	0	792	22	0.792332785124922	0.0143171820587036	0.792332785124922	321.999308759753	0	5.81841722675057						214	35	2	NaN	NaN	NaN	0.014287	1	3102	49.325	33.827	1	46484			10400	1264	8765	8998	10400	10400		
IVEEPQSNR	9	Unmodified	_IVEEPQSNR_			0	0	0	O95747	O95747	O95747	OXSR1	Serine/threonine-protein kinase OSR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.275095	1070.53564	1.0247	0.00054954	-0.18644	-9.9981E-05	0.8383	0.00044956	536.275201116188	2.5079	0.12415	2.5079	2.4902	2.6143	0	690	22	0.86171403876517	0.0142516439925704	0.86171403876517	349.592657004238	0	5.78181376408895						150	15	2	NaN	NaN	NaN	0.0075663	1	5969	40.502	35.595	1	29451			10401	449	8766	8999	10401	10401		
IVEGISQPIWLVSDTR	16	Unmodified	_IVEGISQPIWLVSDTR_			0	0	0	Q15126	Q15126	Q15126	PMVK	Phosphomevalonate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.996351	1811.97815	1.0463	0.000949	-0.90399	-0.00081992	0.14232	0.00012908	907.497537319632	15.952	0.11526	15.952	15.908	16.023	0	246	61	1.1599488233373	0.0398975581700347	1.1599488233373	468.130535354501	0	16.1018011223454						457	14	4	NaN	NaN	NaN	0.0034015	1	27535	61.067	46.704	1	110560			10402	1815	8767	9000	10402	10402		
IVEIDAHIGCAMSGLIADAK	20	Unmodified	_IVEIDAHIGCAMSGLIADAK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.52937	2083.0442	0.37612	0.00039211	-0.38742	-0.00040389	-0.0113	-1.1781E-05	1043.03020866304	15.606	0.070943	15.606	15.579	15.65	0	81	49	1.2692388538616	0.0316824211667004	1.2692388538616	511.731025394381	0	12.7737011999635						288	9	4	NaN	NaN	NaN	0.0012102	1	33072	26.929	26.253	1	42242			10403	872	8768	9001	10403	10403		
IVEMSTSK	8	Unmodified	_IVEMSTSK_			0	0	0	P63241;Q9GZV4	P63241	P63241	EIF5A;EIF5A2	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.733686	893.452819	0.48902	0.00021895	-0.41912	-0.00018766	0.069893	3.1293E-05	447.733537402145	3.0843	0.31922	3.0843	3.0222	3.3415	0	816	31	0.775960037304758	0.0204773388322395	0.775960037304758	315.594028942257	0	8.32842614747182						618	37	4	NaN	NaN	NaN	0.026266	1	2229	56.014	29.791	1	232640			10404	1434	8769	9002	10404	10404		
IVENLGILTGPQLFSLNK	18	Unmodified	_IVENLGILTGPQLFSLNK_			0	0	0	Q9H6S3	Q9H6S3	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.561858	1955.10916	0.92198	0.00090221	2.4658	0.0024129	3.3878	0.0033151	979.065478102609	18.585	0.079793	18.585	18.559	18.639	0	195	28	1.19381749893585	0.0179107814054655	1.19381749893585	481.531189125705	0	7.2243872082895						134	10	3	NaN	NaN	NaN	0.060254	1	30806	31.767	31.292	1	21079			10405	2908	8770	9003	10405	10405		
IVENSDAVTEILNNAELLK	19	Unmodified	_IVENSDAVTEILNNAELLK_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.05733	2084.10011	0.91698	0.00095646	-3.6784	-0.0038367	-2.7614	-0.0028803	1043.55475463721	18.523	0.1508	18.523	18.444	18.594	0	108	82	1.25141139212444	0.0535631038620401	1.25141139212444	504.54167731513	0	21.5954708697994						891	18	5	NaN	NaN	NaN	0.0056742	1	33087	57.62	40.944	1	286580			10406	1881	8771	9004	10406	10406		
IVEPYIAWGYPNLK	14	Unmodified	_IVEPYIAWGYPNLK_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.948141	1661.88173	2.3521	0.0019568	1.6591	0.0013803	4.0112	0.0033371	831.949727383575	15.899	0.24828	15.899	15.828	16.076	0	330	136	1.10399226369747	0.0900355836267333	1.10399226369747	445.853171658564	0	36.3613512903288						2141	29	7	NaN	NaN	NaN	1.527E-11	1	23403	139.78	70.5	1	2237000			10407	752	8772	9005	10407	10407		
IVEPYVTWGFPNLK	14	Unmodified	_IVEPYVTWGFPNLK_			0	0	0	Q6DKI1	Q6DKI1	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.948141	1661.88173	1.7828	0.0014832	-0.30866	-0.00025679	1.4741	0.0012264	831.94805134643	17.309	0.27486	17.309	17.087	17.362	0	345	43	1.09397730668811	0.0280515443878693	1.09397730668811	441.808584981811	0	11.3287661972428						444	32	2	NaN	NaN	NaN	0.023819	1	23402	48.701	31.709	1	224620			10408	2030	8773	9006	10408	10408		
IVEQPTVSVTEPK	13	Unmodified	_IVEQPTVSVTEPK_			0	0	0	Q15054	Q15054	Q15054	POLD3	DNA polymerase delta subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.893032	1425.77151	2.0022	0.0014294	-2.2249	-0.0015883	-0.22267	-0.00015896	713.892345006911	7.1634	0.11525	7.1634	7.1191	7.2343	0	465	58	1.01360860968299	0.0382885589296732	1.01360860968299	409.911292304605	0	15.4841943146596						336	14	4	NaN	NaN	NaN	0.0021494	1	16263	79.889	66.616	1	125360			10409	1803	8774	9007	10409	10409		
IVETEAYLGPEDEAAHSR	18	Unmodified	_IVETEAYLGPEDEAAHSR_			0	0	0	P29372	P29372	P29372	MPG	DNA-3-methyladenine glycosylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.973801	1985.93305	1.4728	0.0014639	0.024171	2.4025E-05	1.497	0.001488	994.475219476096	7.6068	0.062077	7.6068	7.5801	7.6422	0	147	22	1.22562176648663	0.0139019612720204	1.22562176648663	494.305492326268	0	5.60679974749917						76	8	2	NaN	NaN	NaN	0.00014899	1	31376	70.598	67.704	1	15052			10410	886	8775	9008	10410	10410		
IVEVLLMK	8	Unmodified	_IVEVLLMK_			0	0	0	P38159;O75526	P38159	P38159	RBMX;RBMXL2	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA-binding motif protein, X-linked-like-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.796089	943.577625	-0.87147	-0.00041203	-1.1993	-0.000567	-2.0707	-0.00097903	472.796027730971	12.343	0.15962	12.343	12.29	12.449	0	714	46	0.845418525735192	0.030590200468438	0.845418525735192	343.567229780434	0	12.4314645509215						404	19	3	NaN	NaN	NaN	0.0067336	1	3136	58.286	37.627	1	153420			10411	1004	8776	9009	10411	10411		
IVFNLCPLQTEDDK	14	Unmodified	_IVFNLCPLQTEDDK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.419088	1690.82362	2.2204	0.0018794	0.48075	0.00040692	2.7011	0.0022863	846.420288657341	14.577	0.133	14.577	14.524	14.657	0	342	67	1.09598084995137	0.0440870870026808	1.09598084995137	442.555072538364	0	17.8022854937132						650	16	4	NaN	NaN	NaN	0.01378	1	24229	44.82	35.558	1	214440			10412	2355	8777	9010	10412	10412		
IVFSGNLFQHQEDSK	15	Unmodified	_IVFSGNLFQHQEDSK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.624926	1747.85295	-0.38392	-0.00022406	-0.55448	-0.00032361	-0.9384	-0.00054767	583.624561516524	10.72	0.15074	10.72	10.667	10.817	0	738	64	0.829104889055312	0.0428381991231975	0.829104889055312	502.051064619886	0	25.9399790787692						774	18	5	NaN	NaN	NaN	7.3985E-05	1	25834	86.838	75.356	1	323880			10413	2633	8778	9011	10413	10413		
IVFSGNLFQHQEDSK	15	Unmodified	_IVFSGNLFQHQEDSK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.933751	1747.85295	2.3183	0.0020283	-0.93227	-0.00081567	1.386	0.0012126	874.932936324457	10.72	0.097591	10.72	10.676	10.773	0	201	34	1.18983705239708	0.0218969686057855	1.18983705239708	480.326575502575	0	8.83961036775173						273	12	4	NaN	NaN	NaN	3.0775E-08	1	25836	102.57	89.985	1	65792			10414	2633	8778	9011	10414	10414		
IVFVLSSALNPWNK	14	Unmodified	_IVFVLSSALNPWNK_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.448308	1586.88206	1.331	0.0010574	0.63134	0.00050157	1.9623	0.001559	794.448882569258	18.364	0.062048	18.364	18.337	18.399	0	297	34	1.12600091227925	0.0219935068303474	1.12600091227925	454.919150769817	0	8.88566549156627						149	8	3	NaN	NaN	NaN	2.205E-11	1	21185	183.57	164.25	1	32446			10415	939	8779	9012	10415	10415		
IVFVPGCSIPLTIVK	15	Unmodified	_IVFVPGCSIPLTIVK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.324872	1641.95279	-1.0051	-0.00055112	0.57881	0.00031738	-0.42629	-0.00023375	548.325279421741	17.255	0.062081	17.255	17.229	17.291	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	552.842383661925	0	11.0627067991314						161	8	3	NaN	NaN	NaN	0.053421	1	22816	24.689	23.726	1	35595			10416	1250	8780	9013	10416	10416		
IVFVPGCSIPLTIVK	15	Unmodified	_IVFVPGCSIPLTIVK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.983669	1641.95279	1.4158	0.0011638	-0.98395	-0.00080879	0.43185	0.00035498	821.984090548483	17.255	0.28376	17.255	17.122	17.406	0	339	115	1.09798411722691	0.0761085594615842	1.09798411722691	443.471258323867	0	30.7399333962044						1311	33	5	NaN	NaN	NaN	4.9019E-06	1	22817	94.791	77.799	1	736870			10417	1250	8780	9013	10417	10417		
IVGAPMHDLLLWNNATVTTCHSK	23	Unmodified	_IVGAPMHDLLLWNNATVTTCHSK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.101676	2577.2832	2.4549	0.0021115	1.9388	0.0016676	4.3937	0.003779	860.439466415438	13.655	0.20393	13.655	13.504	13.708	0	351	91	1.08996939197032	0.0600691170424721	1.08996939197032	658.340710214474	0	36.281702465251						564	24	6	NaN	NaN	NaN	4.7883E-13	1	37152	95.263	83.9	1	160030			10418	656	8781	9014	10418	10418		
IVGELEQMVSEDVPLDHR	18	Unmodified	_IVGELEQMVSEDVPLDHR_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.345611	2065.015	0.50498	0.00034811	1.0739	0.00074027	1.5789	0.0010884	689.346540824627	15.313	0.09754	15.313	15.269	15.367	0	567	61	0.944945209309785	0.0404629208582415	0.944945209309785	571.504910301018	0	24.4720622188217						540	12	4	NaN	NaN	NaN	7.475E-05	1	32792	76.196	69.991	1	189690			10419	1498	8782	9015	10419	10419		
IVGELEQMVSEDVPLDHR	18	Unmodified	_IVGELEQMVSEDVPLDHR_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.51478	2065.015	1.0125	0.0010464	2.1374	0.002209	3.1498	0.0032554	1033.5168781148	15.322	0.133	15.322	15.287	15.42	0	129	55	1.23753038177212	0.0357209598237578	1.23753038177212	498.975659062622	0	14.4027894045603						310	16	3	NaN	NaN	NaN	1.2873E-06	1	32793	62.494	60.104	1	67905			10420	1498	8782	9015	10420	10420		
IVGHLTHALK	10	Unmodified	_IVGHLTHALK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	363.557348	1087.65021	0.14565	5.2953E-05	-0.75136	-0.00027316	-0.60571	-0.00022021	363.557056586121	3.5278	0.24824	3.5278	3.4923	3.7406	0	906	28	0.714399420407021	0.0185055586194455	0.714399420407021	434.649949685277	0	11.2590238640694						386	29	3	NaN	NaN	NaN	0.0099564	1	6422	58.916	38.257	1	133710			10421	832	8783	9016	10421	10421		
IVGHLTHALK	10	Unmodified	_IVGHLTHALK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.832383	1087.65021	2.1529	0.001173	0.53188	0.00028979	2.6848	0.0014628	544.832716284418	3.5278	0.15075	3.5278	3.5012	3.6519	-4.4409E-16	570	31	0.942920803299286	0.020242660886354	0.942920803299286	382.461318681786	0	8.21069463006194						206	18	3	NaN	NaN	NaN	0.00029684	1	6423	90.761	70.528	1	53121			10422	832	8783	9016	10422	10422		
IVGPEENLSQAEAR	14	Unmodified	_IVGPEENLSQAEAR_			0	0	0	O00469	O00469	O00469	PLOD2	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.886269	1511.75799	1.7826	0.0013493	-1.3084	-0.00099035	0.47419	0.00035891	756.884725038726	7.1723	0.15953	7.1723	7.066	7.2255	0	438	28	1.03173026378327	0.0181141482765854	1.03173026378327	417.011736683978	0	7.32149932645257						206	19	3	NaN	NaN	NaN	0.001503	1	18855	51.569	46.073	1	57726			10423	83	8784	9017	10423	10423		
IVGWYHTGPK	10	Unmodified	_IVGWYHTGPK_			0	0	0	P51665	P51665	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.308741	1156.60293	1.4282	0.00082734	1.3171	0.00076299	2.7452	0.0015903	579.309963738908	5.7357	0.22165	5.7357	5.6736	5.8953	0	594	55	0.926715457081489	0.0364974218210178	0.926715457081489	375.607762471433	0	14.7927984166159						389	26	2	NaN	NaN	NaN	0.00096306	1	8248	99.305	81.909	1	152420			10424	1196	8785	9018	10424	10424		
IVHAFDMEDLGDK	13	Unmodified	_IVHAFDMEDLGDK_			0	0	0	Q9NZ45	Q9NZ45	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.237903	1488.69188	-1.1376	-0.00056568	-0.51268	-0.00025492	-1.6503	-0.0008206	497.237882175855	10.143	0.20394	10.143	10.09	10.294	0	786	61	0.796423123669906	0.0409147939551147	0.796423123669906	482.920410410363	0	24.8091604844572						741	24	5	NaN	NaN	NaN	7.9191E-05	1	18187	90.306	67.408	1	487490			10425	3127	8786	9019	10425	10425		
IVHAFDMEDLGDK	13	Unmodified	_IVHAFDMEDLGDK_			0	0	0	Q9NZ45	Q9NZ45	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.353216	1488.69188	1.797	0.0013394	2.5765	0.0019204	4.3735	0.0032598	745.354922236395	10.143	0.12411	10.143	10.099	10.223	1.7764E-15	432	22	1.035754240522	0.0140790597417815	1.035754240522	418.697003975176	0	5.69136953733403						214	15	4	NaN	NaN	NaN	0.00021976	1	18189	71.896	58.098	1	109220			10426	3127	8786	9019	10426	10426		
IVHAFDMEDLGDK	13	Oxidation (M)	_IVHAFDM(Oxidation (M))EDLGDK_	IVHAFDM(1)EDLGDK	IVHAFDM(50)EDLGDK	0	1	0	Q9NZ45	Q9NZ45	Q9NZ45	CISD1	CDGSH iron-sulfur domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.569541	1504.68679	-1.3333	-0.00067006	0.98193	0.00049349	-0.35134	-0.00017657	502.570106232623	6.8885	0.12413	6.8885	6.8353	6.9594	0	798	37	0.788241307691771	0.024552286497425	0.788241307691771	477.912529238009	0	14.8861081296553						315	15	4	NaN	NaN	NaN	0.0098941	1	18647	50.297	47.418	1	90115			10427	3127	8786	9020	10427	10427	635	
IVHELNTTVPTASFAGK	17	Unmodified	_IVHELNTTVPTASFAGK_			0	0	0	Q4VC31	Q4VC31	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.656226	1783.94685	0.3545	0.00021116	-0.93979	-0.00055979	-0.58529	-0.00034863	595.989943697331	8.9908	0.062073	8.9908	8.9642	9.0262	0	630	67	0.902373728295776	0.0446698550216929	0.902373728295776	546.330918804236	0	27.044806571379						313	8	3	NaN	NaN	NaN	0.021303	1	26809	42.446	34.481	1	74878			10428	1944	8787	9021	10428	10428		
IVHELNTTVPTASFAGK	17	Unmodified	_IVHELNTTVPTASFAGK_			0	0	0	Q4VC31	Q4VC31	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.980701	1783.94685	2.2584	0.0020167	-0.94847	-0.00084697	1.31	0.0011698	893.481325241899	8.9908	0.053222	8.9908	8.973	9.0262	0	267	40	1.14597988355104	0.0259530241191397	1.14597988355104	462.548164659419	0	10.4753354277663						189	7	3	NaN	NaN	NaN	2.5215E-07	1	26810	96.27	85.483	1	42251			10429	1944	8787	9021	10429	10429		
IVHLQETCDLGK	12	Unmodified	_IVHLQETCDLGK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.57826	1411.71295	-0.90161	-0.00042518	-1.0907	-0.00051436	-1.9923	-0.00093954	471.577616538268	5.9396	0.10648	5.9396	5.913	6.0195	0	813	25	0.778007628350577	0.0163795890035051	0.778007628350577	471.990486925327	0	9.9369336593669						178	13	3	NaN	NaN	NaN	0.014788	1	15814	40.386	27.79	1	46140			10430	2804	8788	9022	10430	10430		
IVHSLDYYNTCEYPNEDEMPNR	22	Unmodified	_IVHSLDYYNTCEYPNEDEMPNR_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	920.395253	2758.16393	2.463	0.0022669	-0.3324	-0.00030594	2.1306	0.001961	920.729703075408	9.8154	0.08864	9.8154	9.78	9.8686	0	495	49	0.993446994398923	0.0322808922550346	0.993446994398923	599.83014037666	0	19.4907752924822						498	11	5	NaN	NaN	NaN	3.1275E-06	1	37781	72.075	71.519	1	121680			10431	2786	8789	9023	10431	10431		
IVIGYQSHADTATK	14	Unmodified	_IVIGYQSHADTATK_			0	0	0	P06730	P06730	P06730	EIF4E	Eukaryotic translation initiation factor 4E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.39373	1502.77291	2.8641	0.002155	-2.1738	-0.0016356	0.69034	0.0005194	752.392196964878	5.0351	0.15072	5.0351	4.9997	5.1504	0	393	34	1.0618830335572	0.0220906848842135	1.0618830335572	429.222372339454	0	8.9292472644961						300	18	4	NaN	NaN	NaN	2.0086E-11	1	18603	126.17	101.35	1	97342			10432	543	8790	9024	10432	10432		
IVILDEADSMTSAAQAALR	19	Unmodified	_IVILDEADSMTSAAQAALR_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.011872	1974.00919	1.5682	0.0015494	-2.631	-0.0025995	-1.0629	-0.0010501	989.011877517162	17.663	0.15074	17.663	17.566	17.716	0	201	76	1.18983705239708	0.049765867300561	1.18983705239708	479.893287348396	0	20.0719128795799						1013	18	5	NaN	NaN	NaN	2.0248E-14	1	31185	106.97	90.296	1	204930			10433	964	8791	9025	10433	10433		
IVILEYQPSK	10	Unmodified	_IVILEYQPSK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.344989	1188.67542	1.0035	0.00059742	-0.07546	-4.4924E-05	0.92803	0.0005525	595.344971296186	10.365	0.16847	10.365	10.277	10.445	0	600	58	0.922661313351899	0.0385223886252621	0.922661313351899	373.845660770902	0	15.6085744808854						609	20	3	NaN	NaN	NaN	0.00055671	1	9131	76.605	65.903	1	187580			10434	1841	8792	9026	10434	10434		
IVILPDYLEIAR	12	Unmodified	_IVILPDYLEIAR_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.918852	1413.82315	1.459	0.0010328	0.19189	0.00013584	1.6509	0.0011687	707.919053832654	17.415	0.17735	17.415	17.353	17.53	0	363	52	1.08195024817156	0.034097816394167	1.08195024817156	437.584703478471	0	13.7905443446408						744	21	5	NaN	NaN	NaN	0.0041093	1	15906	59.645	50.668	1	368720			10435	1072	8793	9027	10435	10435		
IVIPNEESVVIYYK	14	Unmodified	_IVIPNEESVVIYYK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.458539	1664.90252	2.2393	0.0018664	0.71412	0.00059519	2.9534	0.0024616	833.459412952491	14.063	0.23941	14.063	13.912	14.152	0	315	49	1.11400032671325	0.0320103814139743	1.11400032671325	449.888235245199	0	12.927369641217						574	28	4	NaN	NaN	NaN	0.0033827	1	23483	46.068	43.767	1	158480			10436	1047	8794	9028	10436	10436		
IVITGDGDIDHDQALAQAIR	20	Unmodified	_IVITGDGDIDHDQALAQAIR_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.702675	2120.0862	0.97959	0.00069326	-1.7626	-0.0012474	-0.78303	-0.00055415	708.366603273442	11.846	0.14186	11.846	11.758	11.899	0	480	37	1.00353128488872	0.0241939396115666	1.00353128488872	606.832694326563	0	14.630010824714						300	17	5	NaN	NaN	NaN	0.00050933	1	33621	52.201	49.96	1	85800			10437	206	8795	9029	10437	10437		
IVIWDFLTR	9	Unmodified	_IVIWDFLTR_			0	0	0	Q15291	Q15291	Q15291	RBBP5	Retinoblastoma-binding protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.834591	1161.65463	-0.61956	-0.00036048	-1.4385	-0.00083695	-2.058	-0.0011974	581.834245849895	18.94	0.079789	18.94	18.914	18.993	0	618	25	0.910492137470517	0.0162323175227004	0.910492137470517	369.013377627854	0	6.5787963116523						86	10	2	NaN	NaN	NaN	0.028428	1	8397	33.426	19.778	1	24856			10438	1830	8796	9030	10438	10438		
IVLAAAGGVSHDELLDLAK	19	Unmodified	_IVLAAAGGVSHDELLDLAK_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.528015	1891.04148	1.2446	0.0011781	-0.86118	-0.00081513	0.38346	0.00036296	947.028852143939	13.877	0.097543	13.877	13.841	13.939	0	60	52	1.28308947459206	0.0336418368402702	1.28308947459206	517.662989082399	0	13.5728132463198						263	12	3	NaN	NaN	NaN	2.6159E-05	1	29403	87.573	81.368	1	66644			10439	335	8797	9031	10439	10439		
IVLAGCPEVSGPTLLAK	17	Unmodified	_IVLAGCPEVSGPTLLAK_			0	0	0	Q96EM0	Q96EM0	Q96EM0	L3HYPDH	Trans-3-hydroxy-L-proline dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.984398	1723.95424	2.1847	0.0018853	0.60518	0.00052226	2.7899	0.0024076	863.48622484419	13.487	0.070935	13.487	13.451	13.522	0	279	34	1.13799159301878	0.0219753573460744	1.13799159301878	459.447133387031	0	8.87222278244269						169	9	3	NaN	NaN	NaN	0.0023348	1	25178	49.097	41.521	1	34980			10440	2515	8798	9032	10440	10440		
IVLANDPDADRLAVAEK	17	Unmodified	_IVLANDPDADRLAVAEK_			0	0	1	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.995019	1808.96323	0.49756	0.00030052	-0.95786	-0.00057854	-0.4603	-0.00027802	603.99415154327	9.0706	0.070948	9.0706	9.044	9.1149	0	612	31	0.914549654013882	0.0202819613609688	0.914549654013882	553.64368375827	0	12.2781521511125						175	9	3	NaN	NaN	NaN	0.00016989	1	27458	63.766	54.504	1	49312			10441	2532	8799	9033	10441	10441		
IVLDNSVFSEHR	12	Unmodified	_IVLDNSVFSEHR_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.580769	1414.72048	-1.4395	-0.0006803	0.95626	0.00045191	-0.48329	-0.00022839	472.581321204614	9.4962	0.28372	9.4962	9.443	9.7268	0	777	43	0.802556497112065	0.0286164420123584	0.802556497112065	486.873404785126	0	17.3602538955554						889	33	5	NaN	NaN	NaN	2.5399E-11	1	15926	144.47	127	1	772550			10442	1503	8800	9034	10442	10442		
IVLDNSVFSEHR	12	Unmodified	_IVLDNSVFSEHR_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.367515	1414.72048	1.5637	0.0011077	1.501	0.0010633	3.0647	0.0021709	708.368720996424	9.5051	0.13302	9.5051	9.4519	9.5849	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	411.571513969799	0	8.96148857647904						505	16	5	NaN	NaN	NaN	2.3576E-07	1	15928	160.98	151.46	1	360080			10443	1503	8800	9034	10443	10443		
IVLDSDAAEYGGHQR	15	Unmodified	_IVLDSDAAEYGGHQR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.265509	1629.7747	0.39041	0.00021248	0.26867	0.00014623	0.65907	0.00035871	544.265587122833	6.1879	0.14189	6.1879	6.1436	6.2855	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	512.220935033547	0	12.3482375167561						400	17	5	NaN	NaN	NaN	7.8251E-05	1	22465	90.689	83.942	1	194530			10444	1543	8801	9035	10444	10444		
IVLDSDAAEYGGHQR	15	Unmodified	_IVLDSDAAEYGGHQR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.894626	1629.7747	2.9608	0.0024157	-1.7564	-0.0014331	1.2044	0.00098266	815.893085994864	6.1879	0.15965	6.1879	6.1436	6.3033	0	270	46	1.14398322290989	0.0299581571070404	1.14398322290989	462.0789970212	0	12.1007326955486						530	19	5	NaN	NaN	NaN	1.5709E-17	1	22466	196.44	183.27	1	223930			10445	1543	8801	9035	10445	10445		
IVLEDGTLHVTEGSGR	16	Unmodified	_IVLEDGTLHVTEGSGR_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.628448	1681.86351	0.26496	0.00014881	0.18246	0.00010248	0.44742	0.00025128	561.628519665357	8.7778	0.15084	8.7778	8.7422	8.8931	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	529.353595928879	0	14.7852469413143						349	18	4	NaN	NaN	NaN	0.00091222	1	23965	45.183	42.882	1	115560			10446	1889	8802	9036	10446	10446		
IVLEDGTLHVTEGSGR	16	Unmodified	_IVLEDGTLHVTEGSGR_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.939033	1681.86351	2.1798	0.0018352	-1.1322	-0.00095325	1.0476	0.00088198	841.937766398608	8.7866	0.071051	8.7866	8.7511	8.8221	0	321	28	1.10999792833052	0.0180145146238793	1.10999792833052	448.234561268403	0	7.27454335977222						165	9	4	NaN	NaN	NaN	0.00020706	1	23966	65.173	61.437	1	35261			10447	1889	8802	9036	10447	10447		
IVLLDSSLEYK	11	Unmodified	_IVLLDSSLEYK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.360836	1278.70712	1.3504	0.00086477	0.27553	0.00017644	1.626	0.0010412	640.361067520933	13.088	0.29263	13.088	13.017	13.309	0	483	73	1.00151498427745	0.0484012810998887	1.00151498427745	405.467748471663	0	19.5954716392732						1180	34	5	NaN	NaN	NaN	1.3327E-05	1	11729	81.163	39.089	1	698300			10448	1129	8803	9037	10448	10448		
IVLQGNQLAALTQAK	15	Unmodified	_IVLQGNQLAALTQAK_			0	0	0	Q9HCK8	Q9HCK8	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.461947	1566.90934	1.3841	0.0010858	2.7442	0.0021527	4.1284	0.0032386	784.965145139945	12.609	0.03545	12.609	12.582	12.618	0	351	16	1.08996939197032	0.0100218581287259	1.08996939197032	440.410494513521	0	4.04940865948345						34	5	2	NaN	NaN	NaN	0.014047	1	20573	31.801	30.326	1	6267.5			10449	2964	8804	9038	10449	10449		
IVLQIDNAR	9	Unmodified	_IVLQIDNAR_			0	0	0	CON__P05784;P05783	CON__P05784;P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.306198	1040.59784	1.4084	0.0007342	0.37534	0.00019567	1.7837	0.00092987	521.306601635514	8.2721	0.20407	8.2721	8.2188	8.4229	0	630	67	0.902373728295776	0.0446822477654109	0.902373728295776	366.221826519241	0	18.1339658685968						740	24	4	NaN	NaN	NaN	9.4634E-08	1	5244	133.9	100.09	1	646060		+	10450	536;27	8805	9039	10450	10450		
IVLTNPVCTEVGEK	14	Unmodified	_IVLTNPVCTEVGEK_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.910898	1557.80724	2.3547	0.0018365	-0.99092	-0.00077283	1.3638	0.0010637	779.910123977962	10.383	0.24831	10.383	10.294	10.543	0	420	82	1.04379886199097	0.0542525565206522	1.04379886199097	421.776537087091	0	21.922284312282						1255	29	5	NaN	NaN	NaN	1.0993E-11	1	20298	160.62	143.97	1	564350			10451	1027	8806	9040	10451	10451		
IVLVDDRECPVR	12	Unmodified	_IVLVDDRECPVR_			0	0	1	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.929292	1469.76605	-0.57254	-0.00028108	0.77223	0.00037911	0.19969	9.8032E-05	490.930033863268	7.1634	0.10639	7.1634	7.128	7.2343	0	753	49	0.81889964927511	0.0326726751685412	0.81889964927511	496.608112823308	0	19.8138020582876						326	13	3	NaN	NaN	NaN	0.0033258	1	17583	57.888	54.785	1	85520			10452	141	8807	9041	10452	10452		
IVMEAIQQASVAK	13	Unmodified	_IVMEAIQQASVAK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.384319	1386.75409	1.5235	0.0010579	1.5336	0.0010649	3.0571	0.0021228	694.385604538601	9.6026	0.15961	9.6026	9.5672	9.7268	0	447	37	1.02569221487577	0.0241605388886725	1.02569221487577	414.910091209146	0	9.77335232594641						344	19	4	NaN	NaN	NaN	0.0046327	1	15056	61.577	52.063	1	86756			10453	2345	8808	9042	10453	10453		
IVMFTIDIGEAPK	13	Unmodified	_IVMFTIDIGEAPK_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.38907	1432.76359	1.6711	0.0011988	1.188	0.00085229	2.8591	0.0020511	717.389892023001	16.564	0.13301	16.564	16.519	16.652	0	345	37	1.09397730668811	0.0240474923010432	1.09397730668811	442.39226678809	0	9.72453867606657						250	16	3	NaN	NaN	NaN	2.4528E-05	1	16481	85.821	66.264	1	77409			10454	1832	8809	9043	10454	10454		
IVNHPTMLQDPDVR	14	Unmodified	_IVNHPTMLQDPDVR_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.615485	1633.82463	0.058122	3.1712E-05	0.99318	0.00054189	1.0513	0.00057361	545.616383259979	6.8441	0.070942	6.8441	6.8175	6.8885	0	711	58	0.847456455381371	0.0387422086728575	0.847456455381371	513.444955457008	0	23.4725825498487						316	9	4	NaN	NaN	NaN	0.00016535	1	22596	61.194	44.907	1	75227			10455	1689	8810	9044	10455	10455		
IVNSAQTGSFK	11	Unmodified	_IVNSAQTGSFK_			0	0	0	O75964	O75964	O75964	ATP5L	ATP synthase subunit g, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.306395	1150.59824	1.9299	0.0011122	-1.5966	-0.00092014	0.33333	0.0001921	576.305284887448	4.042	0.20396	4.042	4.0066	4.2105	0	639	37	0.896281965493857	0.0243721251806781	0.896281965493857	363.295090996525	0	9.87889277724605						443	24	4	NaN	NaN	NaN	4.4089E-05	1	8089	83.358	59.783	1	225240			10456	375	8811	9045	10456	10456		
IVNTPQGCLWYK	12	Unmodified	_IVNTPQGCLWYK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.876662	1477.73877	1.8129	0.0013413	-2.3586	-0.0017451	-0.54569	-0.00040374	740.377327496738	10.161	0.2128	10.161	10.073	10.285	0	444	64	1.02770517576159	0.0422488613849417	1.02770517576159	415.471599979654	0	17.0799976986711						783	25	4	NaN	NaN	NaN	0.00060384	1	17820	76.85	70.984	1	246140			10457	240	8812	9046	10457	10457		
IVPEGEWGQFMDALR	15	Unmodified	_IVPEGEWGQFMDALR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.427247	1746.83994	1.5384	0.0013452	-1.8398	-0.0016087	-0.30139	-0.00026354	874.926417825095	18.08	0.23053	18.08	17.991	18.222	0	312	64	1.11600111266355	0.042016526855482	1.11600111266355	450.521726199612	0	16.9617735977571						654	27	5	NaN	NaN	NaN	0.029657	1	25798	30.875	25.176	1	221500			10458	1581	8813	9047	10458	10458		
IVPEWQDYDQEIK	13	Unmodified	_IVPEWQDYDQEIK_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.904128	1661.7937	2.1367	0.0017775	0.86261	0.00071761	2.9993	0.0024951	832.406431112197	12.174	0.21285	12.174	12.094	12.307	0	369	43	1.07793901817685	0.0280824869885468	1.07793901817685	435.331622860024	0	11.3412673894544						613	25	4	NaN	NaN	NaN	0.0077941	1	23387	29.131	25.843	1	148220			10459	3121	8814	9048	10459	10459		
IVPGQFLAVDPK	12	Unmodified	_IVPGQFLAVDPK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.371538	1282.72852	1.0004	0.00064262	-0.61046	-0.00039214	0.38992	0.00025047	642.371230860858	12.609	0.12413	12.609	12.556	12.68	0	489	55	0.997481546940468	0.0363109867512514	0.997481546940468	403.821268723612	0	14.7001704276858						435	15	3	NaN	NaN	NaN	0.025295	1	11855	25.613	22.005	1	124000			10460	1841	8815	9049	10460	10460		
IVPTDMNDQNLEEPSR	16	Unmodified	_IVPTDMNDQNLEEPSR_			0	0	0	Q9H6U8	Q9H6U8	Q9H6U8	ALG9	Alpha-1,2-mannosyltransferase ALG9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.435997	1856.85744	2.4741	0.0022995	-2.0408	-0.0018968	0.43332	0.00040274	929.433906587393	8.352	0.097593	8.352	8.3076	8.4051	0	327	37	1.10599442759226	0.0240243165075487	1.10599442759226	446.273746431936	0	9.69392020955354						244	12	3	NaN	NaN	NaN	0.0074229	1	28622	34.472	23.501	1	53299			10461	2910	8816	9050	10461	10461		
IVPVEITISLLK	12	Unmodified	_IVPVEITISLLK_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.926146	1323.83774	0.58356	0.00038686	-0.45989	-0.00030488	0.12367	8.1981E-05	662.925814392661	18.284	0.11528	18.284	18.24	18.355	0	471	73	1.00957851518677	0.0484146635728933	1.00957851518677	408.58337891331	0	19.5937478204993						407	14	4	NaN	NaN	NaN	0.0062629	1	13117	36.514	7.2046	1	171320			10462	902	8817	9051	10462	10462		
IVQAEGEAEAAK	12	Unmodified	_IVQAEGEAEAAK_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.314417	1214.61428	2.4552	0.0014935	-1.7428	-0.0010602	0.71231	0.00043331	608.313750885758	3.2794	0.30158	3.2794	3.2351	3.5366	0	561	106	0.948993180460448	0.0708739421498987	0.948993180460448	384.420632163829	0	28.7098012990857						1504	35	4	NaN	NaN	NaN	5.4335E-05	1	9860	106.35	69.783	1	578140			10463	2660	8818	9052	10463	10463		
IVQELPQLLDAR	12	Unmodified	_IVQELPQLLDAR_			0	0	0	Q6PIU2	Q6PIU2	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.903734	1393.79291	1.4564	0.0010164	0.46198	0.00032242	1.9184	0.0013389	697.904167425692	13.824	0.11526	13.824	13.762	13.877	0	453	43	1.02166545906632	0.0281989788945491	1.02166545906632	413.26059921741	0	11.406401980087						341	14	3	NaN	NaN	NaN	0.0022597	1	15269	60	41.189	1	101100			10464	2076	8819	9053	10464	10464		
IVQIPFCGEIDCEDWIK	17	Unmodified	_IVQIPFCGEIDCEDWIK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.50283	2120.9911	1.2655	0.0013433	0.05157	5.4742E-05	1.317	0.001398	1062.00450522528	17.761	0.1596	17.761	17.708	17.867	0	171	85	1.20972836110953	0.0556498662235632	1.20972836110953	487.67982533646	0	22.4342240062993						620	19	2	NaN	NaN	NaN	0.00021379	1	33633	75.012	65.881	1	375370			10465	565	8820	9054	10465	10465		
IVQLLGQNEVDYR	13	Unmodified	_IVQLLGQNEVDYR_			0	0	0	Q9BZX2	Q9BZX2	Q9BZX2	UCK2	Uridine-cytidine kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.91483	1545.81511	2.4419	0.0018898	-1.8504	-0.001432	0.59153	0.00045779	773.913466474062	11.341	0.17739	11.341	11.287	11.465	0	360	37	1.08395544855938	0.0240640669775463	1.08395544855938	438.032882377154	0	9.72443344779583						506	21	4	NaN	NaN	NaN	6.3964E-09	1	19921	94.791	79.643	1	182600			10466	2815	8821	9055	10466	10466		
IVQMTEAEVR	10	Unmodified	_IVQMTEAEVR_			0	0	0	P62140	P62140	P62140	PPP1CB	Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.308081	1174.60161	1.6278	0.00095763	-0.54765	-0.00032219	1.0801	0.00063544	588.309113137421	6.2678	0.31923	6.2678	6.1259	6.4451	0	591	58	0.928742107665821	0.0385010429899318	0.928742107665821	376.361219153185	0	15.602070110483						613	37	3	NaN	NaN	NaN	0.020827	1	8728	61.48	30.887	1	227850			10467	1366	8822	9056	10467	10467		
IVQQIAILMGCAILPHLR	18	Unmodified	_IVQQIAILMGCAILPHLR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.728674	2045.16419	0.29623	0.00020225	-0.48506	-0.00033116	-0.18883	-0.00012892	683.063086666004	19.516	0.097508	19.516	19.463	19.561	0	504	25	0.987393073566096	0.0161471385123466	0.987393073566096	597.216152011502	0	9.76645693240698						218	12	4	NaN	NaN	NaN	0.00080429	1	32451	99.276	98.181	1	45319			10468	343	8823	9057	10468	10468		
IVQYECEGDTCQEEK	15	Unmodified	_IVQYECEGDTCQEEK_			0	0	0	Q7Z569	Q7Z569	Q7Z569	BRAP	BRCA1-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.390398	1886.76624	2.9106	0.0027487	-2.1307	-0.0020122	0.77992	0.00073655	944.388086676246	4.645	0.035468	4.645	4.6273	4.6627	0	330	16	1.10399226369747	0.0100121985573813	1.10399226369747	445.413498648709	0	4.03949242694227						48	5	3	NaN	NaN	NaN	0.0037574	1	29294	42.941	42.202	1	6477.5			10469	2143	8824	9058	10469	10469		
IVSCGNAIIAELLR	14	Unmodified	_IVSCGNAIIAELLR_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.929425	1527.8443	0.94277	0.00072115	-1.6632	-0.0012722	-0.72038	-0.00055104	764.927376586242	17.885	0.12413	17.885	17.841	17.965	0	414	52	1.04781950764076	0.0341920120016164	1.04781950764076	423.474339536554	0	13.8186391780508						280	15	3	NaN	NaN	NaN	0.00016049	1	19366	76.563	67.049	1	66107			10470	1592	8825	9059	10470	10470		
IVSGCPLPEACELYYVNR	18	Unmodified	_IVSGCPLPEACELYYVNR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.51372	2139.0129	1.8314	0.0019606	-2.23	-0.0023873	-0.39857	-0.00042667	1071.01368781161	13.637	0.15962	13.637	13.531	13.691	0	147	79	1.22562176648663	0.0516536046575036	1.22562176648663	494.059885685927	0	20.8220633071065						778	19	3	NaN	NaN	NaN	0.045946	1	33860	21.668	20.573	1	198190			10471	2841	8826	9060	10471	10471		
IVSGEAESVEVTPENLQDFVGK	22	Unmodified	_IVSGEAESVEVTPENLQDFVGK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.08682	2346.15909	0.10352	0.00012155	0.47011	0.00055195	0.57363	0.00067349	1174.58940792126	14.861	0.070939	14.861	14.817	14.888	0	63	52	1.28111162701928	0.0336418368402702	1.28111162701928	516.134099826161	0	13.5536192224334						332	9	4	NaN	NaN	NaN	5.4248E-12	1	36011	88.796	78.037	1	68720			10472	990	8827	9061	10472	10472		
IVSLEPAYPPVFYLNK	16	Unmodified	_IVSLEPAYPPVFYLNK_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.508563	1849.00257	1.1446	0.0010593	-1.7111	-0.0015836	-0.56649	-0.00052429	926.008813055108	17.264	0.23942	17.264	17.122	17.362	0	219	82	1.17788915118882	0.0538506199508257	1.17788915118882	475.298562437996	0	21.7296527633264						1295	28	3	NaN	NaN	NaN	2.4548E-05	1	28472	101.48	91.231	1	420790			10473	1722	8828	9062	10473	10473		
IVSLFAEHNDLQYAAPGGLIGVGTK	25	Unmodified	_IVSLFAEHNDLQYAAPGGLIGVGTK_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.458622	2569.35404	1.7408	0.0014927	2.2527	0.0019316	3.9936	0.0034243	857.795008631291	15.89	0.19508	15.89	15.845	16.041	0	276	100	1.13998907770044	0.0659533633783067	1.13998907770044	688.563959667057	0	39.8364422339323						1132	23	7	NaN	NaN	NaN	6.4561E-14	1	37108	152.17	143.04	1	636580			10474	1027	8829	9063	10474	10474		
IVSLPECFNSPYGAK	15	Unmodified	_IVSLPECFNSPYGAK_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.416348	1680.81814	2.2315	0.0018776	-0.69429	-0.00058419	1.5372	0.0012934	841.415550294838	12.423	0.16847	12.423	12.343	12.511	0	360	67	1.08395544855938	0.044081013383825	1.08395544855938	437.720422942774	0	17.8006945283202						787	20	4	NaN	NaN	NaN	0.0012015	1	23935	62.705	53.443	1	209340			10475	3001	8830	9064	10475	10475		
IVSQLLTLMDGLK	13	Unmodified	_IVSQLLTLMDGLK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.917995	1429.82144	0.94425	0.00067601	0.041819	2.9939E-05	0.98607	0.00070594	715.918389370013	19.073	0.16846	19.073	19.038	19.206	0	441	82	1.02971785871157	0.054327482891144	1.02971785871157	416.414657544041	0	21.9698629017196						941	20	5	NaN	NaN	NaN	1.3996E-16	1	16396	185.18	146.14	1	632680			10476	1265	8831	9065	10476	10476		
IVSRPEELREDDVGTGAGLLEIK	23	Unmodified	_IVSRPEELREDDVGTGAGLLEIK_			0	0	2	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.781654	2495.32313	1.9711	0.0016415	0.10339	8.6097E-05	2.0744	0.0017276	833.11600290513	11.491	0.15078	11.491	11.447	11.598	0	483	88	1.00151498427745	0.0584970270791599	1.00151498427745	605.020875739616	0	35.3383854532451						1149	18	6	NaN	NaN	NaN	0.035654	1	36806	11.68	9.2299	1	444270			10477	1129	8832	9066	10477	10477		
IVSRPEELREDDVGTGAGLLEIK	23	Unmodified	_IVSRPEELREDDVGTGAGLLEIK_			0	0	2	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	624.838059	2495.32313	1.3198	0.00082465	1.7283	0.0010799	3.0481	0.0019046	625.089929079903	11.483	0.27497	11.483	11.42	11.695	0	558	52	0.951016745717027	0.0344053845172715	0.951016745717027	766.017753161346	0	27.7125880940212						872	32	7	NaN	NaN	NaN	4.7129E-18	1	36807	175.48	158.21	1	872520			10478	1129	8832	9066	10478	10478		
IVSSSDVGHDEYSTQSLVK	19	Unmodified	_IVSSSDVGHDEYSTQSLVK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.335769	2049.98548	1.2461	0.00085272	1.0428	0.00071364	2.2889	0.0015664	684.336207959756	7.5092	0.14189	7.5092	7.456	7.5979	0	513	103	0.981336640919867	0.0687775061003709	0.981336640919867	593.543561279156	0	41.5988196144878						643	17	4	NaN	NaN	NaN	0.013721	1	32542	40.53	26.752	1	153880			10479	1511	8833	9067	10479	10479		
IVSWLEYESSFSNEEAQK	18	Unmodified	_IVSWLEYESSFSNEEAQK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.50239	2144.99023	1.7443	0.0018725	0.72288	0.00077602	2.4672	0.0026485	1073.5046024981	15.145	0.22168	15.145	15.065	15.287	0	147	91	1.22562176648663	0.059551302107798	1.22562176648663	494.050993958485	0	24.0052688377256						1067	26	6	NaN	NaN	NaN	6.093E-07	1	33954	92.747	85.892	1	312660			10480	1530	8834	9068	10480	10480		
IVSWLEYESSFSNEEAQK	18	Unmodified	_IVSWLEYESSFSNEEAQK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.00402	2144.99023	1.027	0.00073535	5.9633	0.0042697	6.9903	0.0050051	716.008706611762	15.145	0.15961	15.145	15.092	15.251	0	507	46	0.985374541851584	0.0302905481075687	0.985374541851584	595.808346312087	0	18.3152300068003						483	19	5	NaN	NaN	NaN	0.044528	1	33955	44.045	40.971	1	131550			10481	1530	8834	9068	10481	10481		
IVSWSQVGVEPSIMGIGPIPAIK	23	Unmodified	_IVSWSQVGVEPSIMGIGPIPAIK_			0	0	0	Q9BWD1	Q9BWD1	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1189.66125	2377.30794	0.080668	9.5968E-05	-0.3338	-0.00039711	-0.25314	-0.00030115	1190.16286538041	19.366	0.044322	19.366	19.348	19.392	0	72	22	1.27517645957152	0.0138487246935988	1.27517645957152	513.703296034625	0	5.57894201040097						76	6	3	NaN	NaN	NaN	0.00058301	1	36246	55.354	53.383	1	11626			10482	2777	8835	9069	10482	10482		
IVTLFSDFK	9	Unmodified	_IVTLFSDFK_			0	0	0	Q6YHK3	Q6YHK3	Q6YHK3	CD109	CD109 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.30005	1068.58555	-0.78493	-0.00042017	2.3726	0.00127	1.5876	0.00084986	535.300952577754	14.781	0.11532	14.781	14.737	14.852	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	361.152611962912	0	9.06827904956407						240	14	3	NaN	NaN	NaN	0.0011101	1	5932	74.486	58.988	1	50112			10483	2095	8836	9070	10483	10483		
IVVAGNNEDVSFSRPADLDLIQSTPFK	27	Unmodified	_IVVAGNNEDVSFSRPADLDLIQSTPFK_			0	0	1	Q9GZY8	Q9GZY8	Q9GZY8	MFF	Mitochondrial fission factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	978.17321	2931.4978	0.92073	0.00090064	1.0874	0.0010637	2.0082	0.0019643	978.50819265376	15.899	0.097572	15.899	15.863	15.961	0	390	55	1.06389100039157	0.0361459094054593	1.06389100039157	642.172726956151	0	21.8179467658535						462	12	5	NaN	NaN	NaN	3.9113E-10	1	38121	84.309	76.136	1	118930			10484	2835	8837	9071	10484	10484		
IVVLFYK	7	Unmodified	_IVVLFYK_			0	0	0	Q7L1Q6;Q9Y6E2	Q7L1Q6;Q9Y6E2	Q9Y6E2	BZW1;BZW2	Basic leucine zipper and W2 domain-containing protein 1;Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.278389	880.542226	-3.1442	-0.0013875	0.79036	0.00034877	-2.3539	-0.0010387	441.278869776101	12.272	0.10645	12.272	12.227	12.334	0	795	22	0.790287188799094	0.0143191751131978	0.790287188799094	321.492388020414	0	5.82510493257502						169	13	3	NaN	NaN	NaN	0.071974	1	2019	39.761	28.112	1	42586			10485	3463;2112	8838	9072	10485	10485		
IVVVTAGVR	9	Unmodified	_IVVVTAGVR_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.295102	912.575651	-0.67299	-0.00030776	-1.2536	-0.00057325	-1.9266	-0.00088101	457.294870372094	6.7023	0.1862	6.7023	6.6402	6.8264	0	771	67	0.806643990516186	0.0449311896157503	0.806643990516186	327.969577334414	0	18.2683605663264						570	22	3	NaN	NaN	NaN	0.0014131	1	2556	75.243	49.02	1	407770			10486	553	8839	9073	10486	10486		
IVYGHLDDPASQEIER	16	Unmodified	_IVYGHLDDPASQEIER_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.455047	1840.89554	2.6567	0.0024481	-2.9804	-0.0027463	-0.32362	-0.0002982	921.954058049615	8.3342	0.1242	8.3342	8.2987	8.4229	0	267	55	1.14597988355104	0.0359374340321577	1.14597988355104	462.437790934695	0	14.5018493293231						318	15	3	NaN	NaN	NaN	0.018315	1	28249	29.115	27.131	1	83580			10487	2674	8840	9074	10487	10487		
IVYGHLDDPASQEIER	16	Unmodified	_IVYGHLDDPASQEIER_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.639124	1840.89554	0.53332	0.0003278	0.09339	5.7401E-05	0.62671	0.0003852	614.639199690547	8.343	0.1508	8.343	8.281	8.4318	0	684	34	0.86578508874114	0.0223892235225879	0.86578508874114	524.053828965505	0	13.5520448055265						474	18	5	NaN	NaN	NaN	3.0777E-12	1	28250	188.88	175.71	1	230850			10488	2674	8840	9074	10488	10488		
IVYPTEK	7	Unmodified	_IVYPTEK_			0	0	0	Q14847	Q14847	Q14847	LASP1	LIM and SH3 domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.239461	848.46437	-0.083044	-3.5313E-05	-0.11069	-4.7068E-05	-0.19373	-8.2381E-05	425.239397024743	4.2992	0.18622	4.2992	4.2371	4.4233	0	762	31	0.812773098473386	0.0204289410933094	0.812773098473386	330.83153755461	0	8.31540562206908						287	22	2	NaN	NaN	NaN	0.02927	1	1533	46.835	36.756	1	70824			10489	1777	8841	9075	10489	10489		
IVYYYHDADGHFHLIDGDK	19	Unmodified	_IVYYYHDADGHFHLIDGDK_			0	0	0	O95394	O95394	O95394	PGM3	Phosphoacetylglucosamine mutase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	570.269547	2277.04908	0.60159	0.00034307	0.34155	0.00019477	0.94314	0.00053784	570.520209846806	9.6381	0.088654	9.6381	9.6026	9.6913	0	657	28	0.884090832094921	0.0182930452073933	0.884090832094921	712.488320630176	0	14.7423551810207						283	11	5	NaN	NaN	NaN	0.001077	1	35440	35.182	33.814	1	98157			10490	431	8842	9076	10490	10490		
IWAHEALR	8	Unmodified	_IWAHEALR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.274701	994.534849	0.88794	0.00044244	0.96666	0.00048166	1.8546	0.0009241	498.275081261869	4.8312	0.11527	4.8312	4.8046	4.9199	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	357.367609749317	0	6.60548009409354						164	14	3	NaN	NaN	NaN	0.0012387	1	4157	85.813	34.356	1	39146			10491	1737	8843	9077	10491	10491		
IWCFGPDGTGPNILTDITK	19	Unmodified	_IWCFGPDGTGPNILTDITK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.02224	2104.02993	1.7591	0.0018524	0.39544	0.00041641	2.1546	0.0022688	1053.52457976292	19.002	0.10639	19.002	18.967	19.073	-3.5527E-15	159	76	1.21767724410157	0.049656705966163	1.21767724410157	490.910013089453	0	20.0192409720312						516	13	4	NaN	NaN	NaN	0.0020037	1	33373	47.27	45.796	1	110830			10492	679	8844	9078	10492	10492		
IWCFGPDGTGPNILTDITK	19	Unmodified	_IWCFGPDGTGPNILTDITK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.02224	2104.02993	2.3775	0.0025035	1.7805	0.0018749	4.1579	0.0043784	1053.52651104218	18.701	0.28373	18.701	18.603	18.887	0	183	145	1.20177511391933	0.0953999412971795	1.20177511391933	484.499020080659	0	38.4607548774208						2452	33	6	NaN	NaN	NaN	2.8586E-26	1	33375	207.06	196.57	1	1725900			10493	679	8844	9078	10493	10493		
IWDLEGK	7	Unmodified	_IWDLEGK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.729261	859.443968	-1.4151	-0.0006095	-0.7652	-0.00032959	-2.1802	-0.0009391	430.728924056669	8.8931	0.20409	8.8931	8.8221	9.0262	0	771	34	0.806643990516186	0.0224765256052036	0.806643990516186	328.270017155252	0	9.14699611322845						485	24	3	NaN	NaN	NaN	0.036857	1	1705	40.203	0	1	276580			10494	1435	8845	9079	10494	10494		
IWDLNMENRPVETYQVHEYLR	21	Unmodified	_IWDLNMENRPVETYQVHEYLR_			0	0	1	P63151	P63151	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	677.083969	2704.30677	0.73839	0.00049995	0.49597	0.00033581	1.2344	0.00083576	677.335148634269	13.185	0.079829	13.185	13.15	13.23	0	534	46	0.967195187796614	0.0303324855868733	0.967195187796614	778.715824248703	0	24.4215302281477						315	10	5	NaN	NaN	NaN	6.2113E-08	1	37615	80.379	68.901	1	68425			10495	1428	8846	9080	10495	10495		
IWDLQGSEEPVFR	13	Unmodified	_IWDLQGSEEPVFR_			0	0	0	Q6RFH5	Q6RFH5	Q6RFH5	WDR74	WD repeat-containing protein 74	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.39373	1574.77291	1.6125	0.0012713	-0.30092	-0.00023724	1.3115	0.001034	788.393588759125	14.143	0.15961	14.143	14.099	14.258	0	417	49	1.04580932352505	0.0321651748456302	1.04580932352505	422.548807205323	0	12.9960174946232						473	19	4	NaN	NaN	NaN	1.5104E-05	1	20821	101.64	88.469	1	127800			10496	2081	8847	9081	10496	10496		
IWDPVHR	7	Unmodified	_IWDPVHR_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.748319	921.482085	-0.75409	-0.0003482	-2.2448	-0.0010365	-2.9989	-0.0013847	461.745805370747	6.3033	0.35472	6.3033	6.1259	6.4806	0	747	55	0.822982596624503	0.0367414308410293	0.822982596624503	334.56466235596	0	14.9363843831225						545	41	3	NaN	NaN	NaN	0.032517	1	2732	37.608	15.68	1	161790			10497	883	8848	9082	10497	10497		
IWDTLQK	7	Unmodified	_IWDTLQK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.25036	902.486168	-0.090102	-4.0748E-05	-0.31988	-0.00014466	-0.40998	-0.00018541	452.250502530379	7.2255	0.30148	7.2255	7.1634	7.4649	0	744	49	0.82502364452135	0.0326590469526774	0.82502364452135	335.498066246678	0	13.2808885791869						646	35	4	NaN	NaN	NaN	0.0018698	1	2376	113.85	37.012	1	305700			10498	1055	8849	9083	10498	10498		
IWDYQNK	7	Unmodified	_IWDYQNK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.737617	965.460681	0.41948	0.00020292	1.3603	0.00065805	1.7798	0.00086097	483.738140312033	5.6381	0.23946	5.6381	5.5494	5.7889	0	735	43	0.831145085810763	0.028552837009126	0.831145085810763	337.656746830072	0	11.5997293635758						301	28	2	NaN	NaN	NaN	0.0098108	1	3546	88.35	55.379	1	88135			10499	973	8850	9084	10499	10499		
IWEDLDDDDPK	11	Unmodified	_IWEDLDDDDPK_			0	0	0	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.798797	1359.58304	1.596	0.0010865	1.1607	0.0007902	2.7567	0.0018767	680.799544177998	9.1504	0.10641	9.1504	9.106	9.2125	0	450	31	1.02367897599655	0.0201365621499445	1.02367897599655	414.177389105507	0	8.14719158289421						223	13	4	NaN	NaN	NaN	0.05038	1	14163	43.168	40.066	1	63819			10500	354	8851	9085	10500	10500		
IWEQIQPDLHTNDECVATYK	20	Unmodified	_IWEQIQPDLHTNDECVATYK_			0	0	0	Q12904	Q12904	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.721518	2459.14272	1.41	0.0011572	-0.42178	-0.00034616	0.98824	0.00081107	821.055603050846	11.323	0.14193	11.323	11.261	11.403	0	561	49	0.948993180460448	0.0323837789841732	0.948993180460448	573.338862357625	0	19.5648181503454						751	17	6	NaN	NaN	NaN	1.4064E-11	1	36620	133.47	106.11	1	305880			10501	1604	8852	9086	10501	10501		
IWGEDLR	7	Unmodified	_IWGEDLR_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.732335	887.450116	-0.80713	-0.00035896	-1.5995	-0.00071134	-2.4066	-0.0010703	444.732175914544	8.3342	0.14193	8.3342	8.281	8.4229	0	741	31	0.827064408645228	0.020406225036543	0.827064408645228	336.413342331419	0	8.30035278649649						169	17	3	NaN	NaN	NaN	0.016696	1	2108	58.687	42.139	1	75635			10502	1067	8853	9087	10502	10502		
IWGLDFGDCHK	11	Unmodified	_IWGLDFGDCHK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.876529	1346.60776	-1.178	-0.00052996	-1.394	-0.00062711	-2.572	-0.0011571	449.876026384583	12.963	0.13301	12.963	12.919	13.052	0	804	28	0.78414869089473	0.0184180594239544	0.78414869089473	475.938797262083	0	11.1788352794882						327	16	4	NaN	NaN	NaN	0.0095277	1	13791	39.01	30.536	1	125210			10503	3308	8854	9088	10503	10503		
IWGLDFGDCHK	11	Unmodified	_IWGLDFGDCHK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.311155	1346.60776	1.4672	0.00098933	1.8502	0.0012476	3.3174	0.002237	674.311223025941	12.963	0.10641	12.963	12.928	13.034	0	480	28	1.00353128488872	0.0181467072344021	1.00353128488872	406.065065167101	0	7.34281428657494						234	13	3	NaN	NaN	NaN	0.0027155	1	13792	52.591	41.889	1	79664			10504	3308	8854	9088	10504	10504		
IWHHTFYNELR	11	Unmodified	_IWHHTFYNELR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P68133;P68032	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;ACTA1;ACTC1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.921237	1514.74188	0.10468	5.2959E-05	-1.274	-0.00064454	-1.1693	-0.00059158	506.254903065718	7.802	0.55	7.802	7.6511	8.2011	0	729	46	0.835224628594324	0.030590200468438	0.835224628594324	506.368036591223	0	18.5457890246893						905	63	4	NaN	NaN	NaN	0.001303	1	18963	95.311	76.055	1	285760			10505	1310;1436;1444	8855	9089	10505	10505		
IWHHTFYNELR	11	Unmodified	_IWHHTFYNELR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P68133;P68032	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;ACTA1;ACTC1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.921237	1514.74188	-0.35379	-0.00017899	0.23388	0.00011832	-0.11991	-6.0666E-05	506.255540526094	8.352	0.23952	8.352	8.2011	8.4406	0	720	19	0.841341816837976	0.0122267289803111	0.841341816837976	510.076670979437	0	7.41264619258311						146	28	2	NaN	NaN	NaN	0.04265	1	18964	36.24	35.837	1	56117			10506	1310;1436;1444	8855	9089	10506	10506		
IWHHTFYNELR	11	Unmodified	_IWHHTFYNELR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P68133;P68032	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;ACTA1;ACTC1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.921237	1514.74188	-0.57895	-0.0002929	0.61027	0.00030875	0.03132	1.5845E-05	506.255968994386	9.0706	0.24836	9.0706	8.9819	9.2303	0	720	34	0.841341816837976	0.0224234600075238	0.841341816837976	510.076669239781	0	13.5945742438616						198	29	2	NaN	NaN	NaN	0.035823	1	18965	16.652	14.173	1	54328			10507	1310;1436;1444	8855	9089	10507	10507		
IWHHTFYNELR	11	Unmodified	_IWHHTFYNELR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P68133;P68032	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;ACTA1;ACTC1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.921237	1514.74188	0.51996	0.00026306	1.7494	0.00088505	2.2693	0.0011481	505.922038775421	6.9771	0.78916	6.9771	6.8974	7.6865	0	720	130	0.841341816837976	0.0877530532608501	0.841341816837976	510.076663974885	0	53.2016640146687						2186	90	4	NaN	NaN	NaN	9.0974E-12	1	18967	175.07	141.64	1	7945900			10508	1310;1436;1444	8855	9089	10508	10508		
IWHHTFYNELR	11	Unmodified	_IWHHTFYNELR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261;P68133;P68032	P60709;P63261;P68133	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1;ACTA1;ACTC1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.378217	1514.74188	2.8671	0.0021744	2.7809	0.0021089	5.648	0.0042833	758.882164845907	7.0836	0.51436	7.0836	6.8796	7.394	8.8818E-16	402	172	1.05585747106793	0.114501921732616	1.05585747106793	426.755991854436	0	46.2793345855841						3833	59	6	NaN	NaN	NaN	0.00054165	1	18968	90.263	70.08	1	5646500			10509	1310;1436;1444	8855	9089	10509	10509		
IWHPNISSVTGAICLDILK	19	Unmodified	_IWHPNISSVTGAICLDILK_			0	0	0	P61086	P61086	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.053992	2136.14015	-0.87499	-0.00062391	0.81448	0.00058077	-0.060507	-4.3145E-05	713.388695962631	18.178	0.088682	18.178	18.142	18.231	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	532.122677656684	0	9.83560249722302						200	11	4	NaN	NaN	NaN	3.7434E-05	1	33831	76.009	71.851	1	49631			10510	1327	8856	9090	10510	10510		
IWIFDGPTGEGR	12	Unmodified	_IWIFDGPTGEGR_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.338227	1346.6619	1.1173	0.00075347	-0.5858	-0.00039503	0.53155	0.00035844	674.339136898995	14.568	0.19507	14.568	14.48	14.675	0	501	52	0.98941132619024	0.0343103064176149	0.98941132619024	400.351465415362	0	13.8831859809345						568	23	5	NaN	NaN	NaN	0.0022455	1	13803	65.933	53.337	1	164490			10511	2329	8857	9091	10511	10511		
IWLGLFDAR	9	Unmodified	_IWLGLFDAR_			0	0	0	O95081	O95081	O95081	AGFG2	Arf-GAP domain and FG repeat-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.805834	1089.59712	-1.0758	-0.00058716	2.1401	0.0011681	1.0643	0.00058092	545.807290318669	17.264	0.11529	17.264	17.211	17.326	0	642	19	0.894250814548268	0.0121860610078076	0.894250814548268	362.712004267615	0	4.94271913467821						124	14	2	NaN	NaN	NaN	0.017696	1	6459	37.722	24.075	1	32945			10512	403	8858	9092	10512	10512		
IWNVHSVLNVLHSLVDK	17	Unmodified	_IWNVHSVLNVLHSLVDK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.37042	1972.08943	0.010861	7.1503E-06	-0.54849	-0.00036111	-0.53763	-0.00035396	658.704321542188	19.49	0.10639	19.49	19.454	19.561	0	564	31	0.946969335010767	0.0202398580816178	0.946969335010767	572.909148001079	0	12.2449581211313						166	13	4	NaN	NaN	NaN	0.026217	1	31154	31.722	27.168	1	43940			10513	3329	8859	9093	10513	10513		
IWPLYLR	7	Unmodified	_IWPLYLR_			0	0	0	Q9HCS7	Q9HCS7	Q9HCS7	XAB2	Pre-mRNA-splicing factor SYF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.786913	959.559273	0.18516	8.9025E-05	-2.7104	-0.0013031	-2.5253	-0.0012141	480.785771832118	14.453	0.14188	14.453	14.391	14.533	0	642	22	0.894250814548268	0.0142200298311674	0.894250814548268	363.325147756221	0	5.7774556706629						188	17	2	NaN	NaN	NaN	0.059359	1	3443	44.733	27.039	1	40477			10514	2966	8860	9094	10514	10514		
IWPYVYTLFSNK	12	Unmodified	_IWPYVYTLFSNK_			0	0	0	P27144	P27144	P27144	AK4	Adenylate kinase 4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.903202	1529.79185	1.3269	0.0010162	-0.12073	-9.2465E-05	1.2061	0.00092378	765.90350853931	18.408	0.21286	18.408	18.293	18.506	0	423	28	1.04178812298108	0.0180991506122403	1.04178812298108	421.031947649121	0	7.31465493315551						341	25	3	NaN	NaN	NaN	0.0070541	1	19437	39.039	25.765	1	89341			10515	862	8861	9095	10515	10515		
IWQGIDIETK	10	Unmodified	_IWQGIDIETK_			0	0	0	Q96BS2	Q96BS2	Q96BS2	TESC	Calcineurin B homologous protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.824421	1201.63429	0.62455	0.00037587	-0.19668	-0.00011837	0.42787	0.0002575	601.823921269381	11.279	0.16854	11.279	11.199	11.367	0	603	43	0.920633820089869	0.0283829455526903	0.920633820089869	372.977997402672	0	11.4988326103402						250	20	2	NaN	NaN	NaN	0.00083359	1	9516	78.816	65.168	1	69389			10516	2486	8862	9096	10516	10516		
IWQYVYSK	8	Unmodified	_IWQYVYSK_			0	0	0	P42025;P61163	P42025;P61163	P61163	ACTR1B;ACTR1A	Beta-centractin;Alpha-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.784567	1085.55458	0.74207	0.00040352	2.1609	0.001175	2.9029	0.0015786	543.784834024905	8.9464	0.19524	8.9464	8.8576	9.0528	0	627	58	0.90440375274676	0.0385811807386501	0.90440375274676	366.847137329873	0	15.6494216944535						818	23	5	NaN	NaN	NaN	0.014354	1	6351	60.589	31.279	1	274520			10517	1332;1039	8863	9097	10517	10517		
IWSLYDAGPR	10	Unmodified	_IWSLYDAGPR_			0	0	0	Q9NZD8	Q9NZD8	Q9NZD8	SPG21	Maspardin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.303655	1176.59276	-0.46477	-0.00027389	-0.76857	-0.00045292	-1.2333	-0.00072681	589.303312649964	11.926	0.14188	11.926	11.882	12.024	0	636	40	0.898312834727904	0.0263939831579142	0.898312834727904	364.022983797419	0	10.6956242101928						288	17	3	NaN	NaN	NaN	0.0057322	1	8785	40.502	9.9407	1	75669			10518	3131	8864	9098	10518	10518		
IWTHPGWSPLK	11	Unmodified	_IWTHPGWSPLK_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.239907	1320.69789	-0.81294	-0.0003587	0.93318	0.00041176	0.12024	5.3055E-05	441.24013589084	10.055	0.088676	10.055	10.01	10.099	0	696	25	0.857641857947968	0.0162909868365219	0.857641857947968	520.649020953742	0	9.88977656372742						220	11	4	NaN	NaN	NaN	0.031815	1	13007	18.507	14.899	1	68650			10519	188	8865	9099	10519	10519		
IWVNISLSGIK	11	Unmodified	_IWVNISLSGIK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.366256	1228.71796	0.88679	0.0005457	-2.1468	-0.0013211	-1.26	-0.00077537	615.364647715249	15.579	0.097591	15.579	15.535	15.633	1.7764E-15	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	383.551336296591	0	9.83730906919624						226	12	3	NaN	NaN	NaN	4.4682E-05	1	10278	78.816	72.95	1	71977			10520	1489	8866	9100	10520	10520		
IWYHTFYNELR	11	Unmodified	_IWYHTFYNELR_			0	0	0	Q562R1	Q562R1	Q562R1	ACTBL2	Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.589376	1540.7463	-1.075	-0.00055319	6.1318	0.0031554	5.0568	0.0026022	514.592869954876	11.961	0.23056	11.961	11.837	12.068	-1.7764E-15	705	43	0.851531465363931	0.0285250764845424	0.851531465363931	516.175473621736	0	17.2911342251012						465	27	4	NaN	NaN	NaN	0.0042577	1	19736	81.099	69.743	1	179390			10521	1955	8867	9101	10521	10521		
IWYHTFYNELR	11	Unmodified	_IWYHTFYNELR_			0	0	0	Q562R1	Q562R1	Q562R1	ACTBL2	Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.589376	1540.7463	-0.051578	-2.6541E-05	6.6258	0.0034096	6.5743	0.003383	514.592691205878	11.536	0.23949	11.536	11.483	11.722	0	702	55	0.853568545818287	0.0366751040000942	0.853568545818287	517.410294730956	0	22.2314616241927						956	28	5	NaN	NaN	NaN	1.4509E-05	1	19738	154.35	136.88	1	508420			10522	1955	8867	9101	10522	10522		
IWYLLDGK	8	Unmodified	_IWYLLDGK_			0	0	0	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.28166	1006.54877	-0.84243	-0.00042482	-0.45501	-0.00022945	-1.2974	-0.00065427	504.281524385651	14.161	0.14187	14.161	14.099	14.24	0	708	37	0.849494101904619	0.0244500640244978	0.849494101904619	344.91325567962	0	9.92726278541193						277	17	3	NaN	NaN	NaN	0.0013025	1	4438	78.178	50.474	1	62350			10523	2797	8868	9102	10523	10523		
IYADTFGDINYQEFAK	16	Unmodified	_IYADTFGDINYQEFAK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.946524	1893.87849	1.0856	0.0010291	2.7414	0.0025987	3.827	0.0036278	947.949137012851	14.808	0.16849	14.808	14.764	14.932	0	219	73	1.17788915118882	0.0477981997883583	1.17788915118882	475.214676947266	0	19.2839929361438						721	20	4	NaN	NaN	NaN	1.9544E-18	1	29462	196.38	172.58	1	308340			10524	1796	8869	9103	10524	10524		
IYALPDDLVEVK	12	Unmodified	_IYALPDDLVEVK_			0	0	0	Q14651	Q14651	Q14651	PLS1	Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.879393	1373.74423	1.1734	0.00080717	-0.96572	-0.0006643	0.20769	0.00014287	687.87907432825	14.427	0.11527	14.427	14.382	14.498	1.7764E-15	432	34	1.035754240522	0.0221364589535984	1.035754240522	419.019531971235	0	8.95541462187254						196	14	3	NaN	NaN	NaN	0.0030574	1	14634	43.168	33.654	1	46147			10525	1760	8870	9104	10525	10525		
IYANFFPYGDASK	13	Unmodified	_IYANFFPYGDASK_			0	0	0	P37235;P84074	P37235	P37235	HPCAL1;HPCA	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.858992	1491.70343	1.7321	0.0012937	0.25049	0.00018708	1.9826	0.0014807	746.858991909731	13.496	0.22169	13.496	13.398	13.62	0	414	58	1.04781950764076	0.0382040575606513	1.04781950764076	423.56644371806	0	15.4434582278392						994	26	4	NaN	NaN	NaN	5.881E-05	1	18286	90.306	76.311	1	327180			10526	999	8871	9105	10526	10526		
IYAPEAPYTSHDK	13	Unmodified	_IYAPEAPYTSHDK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.359356	1490.70416	2.2141	0.0016526	-2.4737	-0.0018463	-0.25955	-0.00019371	746.857919758059	5.6115	0.16853	5.6115	5.5405	5.7091	0	447	40	1.02569221487577	0.0261648835876145	1.02569221487577	414.62435895612	0	10.5768552469612						340	20	4	NaN	NaN	NaN	0.022952	1	18245	32.549	23.034	1	82119			10527	1921	8872	9106	10527	10527		
IYAPEAPYTSHDK	13	Unmodified	_IYAPEAPYTSHDK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.908663	1490.70416	0.16314	8.1228E-05	0.35951	0.000179	0.52265	0.00026023	498.242908001345	5.5937	0.17738	5.5937	5.5317	5.7091	0	729	28	0.835224628594324	0.0183541170899648	0.835224628594324	506.44186129557	0	11.1290937829773						241	21	3	NaN	NaN	NaN	0.068702	1	18246	14.455	10.847	1	59279			10528	1921	8872	9106	10528	10528		
IYAPEAPYTSPDK	13	Unmodified	_IYAPEAPYTSPDK_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.356282	1450.69801	1.7438	0.0012666	1.8268	0.0013269	3.5706	0.0025935	726.35848406833	7.6156	0.13308	7.6156	7.5713	7.7044	0	444	58	1.02770517576159	0.0382198802455282	1.02770517576159	415.543420110868	0	15.4538676344459						279	16	3	NaN	NaN	NaN	0.049776	1	17001	26.579	7.3229	1	61142			10529	3041	8873	9107	10529	10529		
IYAPQGLLLTDPIER	15	Unmodified	_IYAPQGLLLTDPIER_			0	0	0	Q7Z5G4	Q7Z5G4	Q7Z5G4	GOLGA7	Golgin subfamily A member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.974887	1697.93522	1.1775	0.0010009	-0.48094	-0.00040879	0.69657	0.00059207	850.476508152798	15.73	0.12414	15.73	15.677	15.801	0	306	28	1.12000185836644	0.0179996405017726	1.12000185836644	452.239315785847	0	7.26797464138627						286	15	3	NaN	NaN	NaN	4.6706E-06	1	24446	73.891	65.516	1	75940			10530	2144	8874	9108	10530	10530		
IYAVEASTMAQHAEVLVK	18	Unmodified	_IYAVEASTMAQHAEVLVK_			0	0	0	Q86X55	Q86X55	Q86X55	CARM1	Histone-arginine methyltransferase CARM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.011793	1959.01355	0.89821	0.00058744	-2.3108	-0.0015113	-1.4125	-0.00092382	654.343845578601	12.21	0.22166	12.21	12.13	12.352	0	528	61	0.971237000454584	0.0404349276895257	0.971237000454584	587.618287314567	0	24.4639598218422						402	26	4	NaN	NaN	NaN	0.0013189	1	30894	73.502	62.02	1	129540			10531	2183	8875	9109	10531	10531		
IYDALDVSLIER	12	Unmodified	_IYDALDVSLIER_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.879924	1405.7453	0.94539	0.00066544	-1.1332	-0.00079765	-0.18782	-0.0001322	703.878949789053	14.923	0.28376	14.923	14.834	15.118	0	453	55	1.02166545906632	0.0362308083382761	1.02166545906632	413.226087437457	0	14.6540289107987						478	32	3	NaN	NaN	NaN	0.00059591	1	15653	77.358	51.502	1	140320			10532	1250	8876	9110	10532	10532		
IYDALDVSLIER	12	Unmodified	_IYDALDVSLIER_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.879924	1405.7453	0.90911	0.00063991	2.7311	0.0019224	3.6402	0.0025623	703.881959033254	14.923	0.053202	14.923	14.897	14.95	0	405	28	1.05384839605172	0.0180791826829763	1.05384839605172	426.24288525309	0	7.31236392130097						101	7	2	NaN	NaN	NaN	0.00037691	1	15656	54.584	45.606	1	23409			10533	1250	8876	9110	10533	10533		
IYDDDFFQNLDGVANALDNVDAR	23	Unmodified	_IYDDDFFQNLDGVANALDNVDAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	867.401501	2599.18267	0.47753	0.00041421	-0.5476	-0.00047499	-0.070067	-6.0776E-05	867.734975730244	19.96	0.017751	19.96	19.951	19.969	0	492	49	0.995464410099171	0.03226750840465	0.995464410099171	601.23260564096	0	19.4886707740125						119	3	4	NaN	NaN	NaN	0.00056834	1	37239	33.828	33.632	1	25118			10534	804	8877	9111	10534	10534		
IYDLNKPEAEPK	12	Unmodified	_IYDLNKPEAEPK_			0	0	1	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.872099	1415.72965	3.0931	0.0021926	-2.9107	-0.0020633	0.1824	0.0001293	708.870129182938	5.1238	0.18619	5.1238	5.0706	5.2568	0	480	88	1.00353128488872	0.0584081814505198	1.00353128488872	405.863601487249	0	23.622337675758						696	22	4	NaN	NaN	NaN	0.00046446	1	15967	117.45	73.712	1	204900			10535	3394	8878	9112	10535	10535		
IYDLNKPEAEPK	12	Unmodified	_IYDLNKPEAEPK_			0	0	1	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.917158	1415.72965	0.82831	0.00039172	3.918	0.0018529	4.7463	0.0022446	473.254652887908	5.1238	0.23943	5.1238	5.0617	5.3012	0	732	73	0.833184998970724	0.0489885893734439	0.833184998970724	505.450783355704	0	29.7188750456226						564	28	4	NaN	NaN	NaN	0.021033	1	15969	54.584	34.35	1	326160			10536	3394	8878	9112	10536	10536		
IYDPQEGAVVVLPADSQQR	19	Unmodified	_IYDPQEGAVVVLPADSQQR_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.03419	2084.05383	1.1385	0.0011874	-0.73865	-0.00077043	0.3998	0.00041701	1043.53529222376	11.669	0.070926	11.669	11.624	11.695	0	216	25	1.17988115188462	0.0159327236441533	1.17988115188462	475.702311053424	0	6.42372619207697						137	9	3	NaN	NaN	NaN	1.8433E-05	1	33084	78.673	76.283	1	26891			10537	3102	8879	9113	10537	10537		
IYEAPDVMNLSQWSLQHEISCK	22	Unmodified	_IYEAPDVMNLSQWSLQHEISCK_			0	0	0	Q96EE3	Q96EE3	Q96EE3	SEH1L	Nucleoporin SEH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.420963	2647.24106	1.028	0.00090814	0.064384	5.6878E-05	1.0924	0.00096501	883.754627009904	15.872	0.053207	15.872	15.845	15.899	0	435	31	1.03374239103424	0.0201198859944203	1.03374239103424	624.291137308432	0	12.1506737257878						185	7	4	NaN	NaN	NaN	0.026481	1	37423	16.687	4.3118	1	34666			10538	2510	8880	9114	10538	10538		
IYEDGDDDMK	10	Unmodified	_IYEDGDDDMK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.739893	1199.46523	3.0162	0.001812	-0.4437	-0.00026655	2.5725	0.0015454	600.739862278754	3.8824	0.41676	3.8824	3.8381	4.2549	0	582	61	0.934820374997243	0.0405246082465108	0.934820374997243	378.73319770943	0	16.4181428621175						1297	48	5	NaN	NaN	NaN	0.00090329	1	9437	100.84	95.088	1	857550			10539	2950	8881	9115	10539	10539		
IYEDGDDDMK	10	Oxidation (M)	_IYEDGDDDM(Oxidation (M))K_	IYEDGDDDM(1)K	IYEDGDDDM(55)K	0	1	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.737351	1215.46015	1.7084	0.00104	-0.27542	-0.00016766	1.433	0.00087229	608.737018446228	2.4547	0.25715	2.4547	2.4193	2.6764	0	636	28	0.898312834727904	0.0182778248645526	0.898312834727904	363.888054390939	0	7.40397094568391						274	30	2	NaN	NaN	NaN	0.02793	1	9879	55.235	50.695	1	52071			10540	2950	8881	9116	10540	10540	629	
IYEDGDDDMKR	11	Unmodified	_IYEDGDDDMKR_			0	0	1	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.862725	1355.56634	-0.19055	-8.6293E-05	1.0368	0.00046952	0.84624	0.00038323	452.863458888245	3.102	0.12408	3.102	3.0755	3.1996	0	807	22	0.782101955086014	0.0143291466309899	0.782101955086014	474.664693957731	0	8.69648765873018						158	15	3	NaN	NaN	NaN	0.050788	1	14050	50.834	44.968	1	35747			10541	2950	8882	9117	10541	10541		
IYEDGDDDMKR	11	Unmodified	_IYEDGDDDMKR_			0	0	1	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.790449	1355.56634	2.2942	0.0015573	0.088552	6.0108E-05	2.3827	0.0016174	678.789469425857	3.102	0.062088	3.102	3.0843	3.1464	0	531	25	0.969216233931596	0.0161694889209075	0.969216233931596	392.15362866606	0	6.54232103427302						82	8	3	NaN	NaN	NaN	0.050878	1	14051	34.953	25.438	1	12188			10542	2950	8882	9117	10542	10542		
IYEFPETDDEEENK	14	Unmodified	_IYEFPETDDEEENK_			0	0	0	Q16181	Q16181	Q16181	SEPT7	Septin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.373054	1756.73156	3.1727	0.00279	-1.6671	-0.001466	1.5056	0.001324	879.371980832539	8.7511	0.25749	8.7511	8.6623	8.9198	0	339	67	1.09798411722691	0.0440931618768858	1.09798411722691	443.228740653901	0	17.7993072062825						1568	30	6	NaN	NaN	NaN	1.5451E-05	1	26060	71.896	69.225	1	513640			10543	1877	8883	9118	10543	10543		
IYELAAGGTAVGTGLNTR	18	Unmodified	_IYELAAGGTAVGTGLNTR_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.467958	1762.92136	2.3427	0.0020673	-1.3589	-0.0011991	0.9838	0.00086817	882.466672587898	10.897	0.13303	10.897	10.862	10.995	0	96	130	1.2593374219024	0.0853511094914368	1.2593374219024	508.349058504641	0	34.4531619546053						1039	16	4	NaN	NaN	NaN	5.0731E-19	1	26225	181.08	144.56	1	370570			10544	571	8884	9119	10544	10544		
IYESHVGISSHEGK	14	Unmodified	_IYESHVGISSHEGK_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.923083	1541.74742	1.2673	0.00065257	0.8087	0.00041642	2.076	0.001069	515.257563303719	3.2262	0.31036	3.2262	3.0932	3.4035	0	717	55	0.84338031290707	0.0366751040000942	0.84338031290707	511.231535978072	0	22.2313343851905						553	36	5	NaN	NaN	NaN	0.0002069	1	19777	92.707	71.557	1	188630			10545	1543	8885	9120	10545	10545		
IYEYVESR	8	Unmodified	_IYEYVESR_			0	0	0	Q8WWY3	Q8WWY3	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.761289	1057.50803	0.9231	0.00048902	2.9318	0.0015531	3.8549	0.0020422	529.762719767939	5.576	0.15085	5.576	5.4962	5.6471	0	657	28	0.884090832094921	0.018298122879973	0.884090832094921	358.726907412938	0	7.42460932056116						233	18	2	NaN	NaN	NaN	0.058657	1	5652	24.121	17.431	1	66721			10546	2393	8886	9121	10546	10546		
IYFGSNIPNMFVDSSCALK	19	Unmodified	_IYFGSNIPNMFVDSSCALK_			0	0	0	O75477	O75477	O75477	ERLIN1	Erlin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.0161	2162.01765	0.18352	0.00019857	0.54761	0.00059252	0.73113	0.00079109	1082.51852812178	17.885	0.070927	17.885	17.858	17.929	0	102	40	1.25537494996371	0.0257578369034963	1.25537494996371	506.01892988261	0	10.3825180408249						202	9	3	NaN	NaN	NaN	0.059972	1	34205	25.705	22.99	1	35490			10547	337	8887	9122	10547	10547		
IYFLLVR	7	Unmodified	_IYFLLVR_			0	0	0	O75436;Q4G0F5	O75436;Q4G0F5	O75436	VPS26A;VPS26B	Vacuolar protein sorting-associated protein 26A;Vacuolar protein sorting-associated protein 26B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.289288	922.564024	-1.199	-0.0005543	-0.88154	-0.00040753	-2.0806	-0.00096183	462.288653102477	15.065	0.097526	15.065	15.03	15.127	0	714	49	0.845418525735192	0.0326227467021474	0.845418525735192	343.679546517794	0	13.261799276292						277	12	3	NaN	NaN	NaN	0.0056488	1	2751	97.926	68.616	1	73689			10548	334;1939	8888	9123	10548	10548		
IYGADDIELLPEAQHK	16	Unmodified	_IYGADDIELLPEAQHK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.643986	1810.91013	0.050581	3.0583E-05	0.51266	0.00030998	0.56324	0.00034056	604.978684182208	12.139	0.20398	12.139	12.068	12.272	0	624	34	0.906433495720521	0.0223209853619647	0.906433495720521	548.725891035567	0	13.5124117095871						671	24	5	NaN	NaN	NaN	1.3396E-06	1	27496	142.51	122.95	1	408950			10549	656	8889	9124	10549	10549		
IYGADDIELLPEAQHK	16	Unmodified	_IYGADDIELLPEAQHK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.462341	1810.91013	1.695	0.0015364	0.62245	0.00056423	2.3174	0.0021007	906.463108984957	12.139	0.15963	12.139	12.059	12.219	0	258	58	1.15196821829984	0.0379209212295002	1.15196821829984	464.911811087847	0	15.3041411098529						738	19	4	NaN	NaN	NaN	9.0693E-07	1	27499	112.73	104.76	1	257760			10550	656	8889	9124	10550	10550		
IYGESADAVK	10	Unmodified	_IYGESADAVK_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.766571	1051.51859	1.3402	0.00070599	0.43381	0.00022851	1.774	0.0009345	526.767201515351	4.2371	0.088727	4.2371	4.2017	4.2904	0	672	31	0.873923798053065	0.0203383037367069	0.873923798053065	354.627526631132	0	8.25303346366036						198	11	3	NaN	NaN	NaN	0.033835	1	5505	39.01	12.787	1	121220			10551	1178	8890	9125	10551	10551		
IYGFYDECK	9	Unmodified	_IYGFYDECK_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.760432	1193.50631	1.0942	0.00065407	0.34253	0.00020475	1.4367	0.00085882	597.760715004164	8.9464	0.20412	8.9464	8.8931	9.0972	0	591	55	0.928742107665821	0.0364670917031453	0.928742107665821	376.292009910888	0	14.7751190769943						879	24	5	NaN	NaN	NaN	0.00099199	1	9247	87.251	75.184	1	483700			10552	1366;992;1365	8891	9126	10552	10552		
IYGISFPDPK	10	Unmodified	_IYGISFPDPK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.802957	1135.59136	1.0643	0.00060539	-1.2074	-0.00068676	-0.14305	-8.1369E-05	568.802321640823	13.114	0.23054	13.114	13.008	13.238	0	594	61	0.926715457081489	0.0405302231848498	0.926715457081489	375.689653044138	0	16.4309177857802						721	27	2	NaN	NaN	NaN	0.020363	1	7690	50.834	35.253	1	850960			10553	857	8892	9127	10553	10553		
IYGLGSLALYEK	12	Unmodified	_IYGLGSLALYEK_			0	0	0	P36542	P36542	P36542	ATP5C1	ATP synthase subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.868828	1325.7231	1.4087	0.0009352	-0.17363	-0.00011527	1.2351	0.00081993	663.868741959676	14.551	0.20394	14.551	14.506	14.71	0	459	43	1.01763759082241	0.0282028744341156	1.01763759082241	411.838890766857	0	11.4137298269381						610	24	5	NaN	NaN	NaN	3.9808E-05	1	13169	106.35	92.358	1	382490			10554	985	8893	9128	10554	10554		
IYGNQDTSVQLK	12	Unmodified	_IYGNQDTSVQLK_			0	0	0	CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.354074	1364.69359	1.5716	0.0010739	-1.1737	-0.00080202	0.39792	0.00027192	683.353321422966	6.2855	0.070999	6.2855	6.25	6.321	0	480	67	1.00353128488872	0.0443188179051401	1.00353128488872	406.010400615718	0	17.9305830156319						201	9	2	NaN	NaN	NaN	0.0046794	1	14338	51.872	31.639	1	54276		+	10555	45	8894	9129	10555	10555		
IYHPNVDK	8	Unmodified	_IYHPNVDK_			0	0	0	P61088;Q5JXB2	P61088	P61088	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	329.174903	984.50288	-1.1833	-0.00038951	1.2636	0.00041593	0.080267	2.6422E-05	329.175249682273	2.9336	0.25714	2.9336	2.8715	3.1286	0	900	28	0.718511479433384	0.018502976221729	0.718511479433384	437.723097621235	0	11.2721651620295						315	30	3	NaN	NaN	NaN	0.061541	1	3928	15.582	9.8339	1	83137			10556	1328	8895	9130	10556	10556		
IYHPNVDK	8	Unmodified	_IYHPNVDK_			0	0	0	P61088;Q5JXB2	P61088	P61088	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.258717	984.50288	0.9861	0.0004864	0.027462	1.3546E-05	1.0136	0.00049995	493.258680287742	2.9424	0.23942	2.9424	2.8715	3.1109	0	708	34	0.849494101904619	0.0224141150004975	0.849494101904619	345.017389580254	0	9.10337038230728						347	28	3	NaN	NaN	NaN	0.015283	1	3929	65.313	51.76	1	76364			10557	1328	8895	9130	10557	10557		
IYIDSNNNPER	11	Unmodified	_IYIDSNNNPER_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.820398	1333.62624	2.7312	0.0018239	-0.61663	-0.00041179	2.1146	0.0014121	668.321487648396	5.0085	0.33691	5.0085	4.8933	5.2302	0	531	58	0.969216233931596	0.0383892689432068	0.969216233931596	392.218744678583	0	15.5352235619856						757	39	3	NaN	NaN	NaN	2.2682E-07	1	13387	121.8	97.675	1	510460			10558	1503	8896	9131	10558	10558		
IYIGDQVQK	9	Unmodified	_IYIGDQVQK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.292756	1062.57096	0.41196	0.00021928	1.2773	0.00067989	1.6892	0.00089917	532.292576479105	5.8598	0.15958	5.8598	5.78	5.9396	0	657	28	0.884090832094921	0.0182955837794518	0.884090832094921	358.704941989701	0	7.42312450263182						232	19	4	NaN	NaN	NaN	0.031463	1	5799	49.96	26.651	1	64956			10559	3235	8897	9132	10559	10559		
IYITLTGVHQVPTENVQVHFTER	23	Unmodified	_IYITLTGVHQVPTENVQVHFTER_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	671.106601	2680.3973	1.0892	0.00073098	0.063631	4.2703E-05	1.1528	0.00077368	671.357546294833	13.203	0.19508	13.203	13.132	13.327	0	522	85	0.975277694896658	0.0565306657497275	0.975277694896658	785.259076498462	0	45.5164909571503						1250	23	6	NaN	NaN	NaN	5.7065E-07	1	37551	86.798	83.225	1	437450			10560	2950	8898	9133	10560	10560		
IYIYTLK	7	Unmodified	_IYIYTLK_			0	0	0	Q38SD2	Q38SD2	Q38SD2	LRRK1	Leucine-rich repeat serine/threonine-protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.273304	912.532055	-0.58384	-0.00026698	-0.78465	-0.0003588	-1.3685	-0.00062578	457.273013097262	10.427	0.13303	10.427	10.383	10.516	0	732	37	0.833184998970724	0.0244772608396998	0.833184998970724	338.760998440822	0	9.95210107166668						229	16	3	NaN	NaN	NaN	0.0024855	1	2553	92.319	3.9693	1	75228			10561	1929	8899	9134	10561	10561		
IYLDMLNVYK	10	Unmodified	_IYLDMLNVYK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.338849	1270.66315	0.93853	0.00059722	2.5323	0.0016114	3.4709	0.0022087	636.843932018653	15.358	0.3282	15.358	15.154	15.482	0	513	100	0.981336640919867	0.0667315373174334	0.981336640919867	397.325322087395	0	27.018383348229						822	38	5	NaN	NaN	NaN	0.0027467	1	11529	81.642	62.386	1	322090			10562	135	8900	9135	10562	10562		
IYLSCLEELMK	11	Unmodified	_IYLSCLEELMK_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.854006	1397.69346	0.5525	0.00038667	0.80989	0.0005668	1.3624	0.00095347	699.854976116851	17.273	0.15074	17.273	17.229	17.38	0	402	49	1.05585747106793	0.0321474274065014	1.05585747106793	427.07945524775	0	13.0031809790565						604	18	5	NaN	NaN	NaN	5.2078E-05	1	15373	102.55	86.964	1	269840			10563	1860	8901	9136	10563	10563		
IYLTADNLVLNLQDESFTR	19	Unmodified	_IYLTADNLVLNLQDESFTR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	742.386464	2224.13756	0.0582	4.3207E-05	-1.5502	-0.0011509	-1.492	-0.0011077	742.71929284693	18.426	0.070939	18.426	18.399	18.47	0	588	28	0.93076847747433	0.0182348035691394	0.93076847747433	562.661974359227	0	11.0231822698869						212	9	5	NaN	NaN	NaN	9.9639E-11	1	34932	126.63	115.87	1	54991			10564	2660	8902	9137	10564	10564		
IYLTADNLVLNLQDESFTR	19	Unmodified	_IYLTADNLVLNLQDESFTR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1113.07606	2224.13756	0.92748	0.0010324	-0.49261	-0.00054831	0.43487	0.00048405	1113.57709587817	18.426	0.11531	18.426	18.381	18.497	0	81	82	1.2692388538616	0.0534751005302656	1.2692388538616	511.515992076875	0	21.5510020166244						758	14	4	NaN	NaN	NaN	7.0937E-20	1	34933	171.14	160.38	1	231300			10565	2660	8902	9137	10565	10565		
IYNEIPDINLDVPHSYSVLER	21	Unmodified	_IYNEIPDINLDVPHSYSVLER_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.423578	2485.2489	1.4198	0.0011776	-0.50515	-0.00041899	0.91466	0.00075864	829.757528495942	15.73	0.1064	15.73	15.695	15.801	0	528	94	0.971237000454584	0.0626091801760076	0.971237000454584	586.742946244017	0	37.8234095500885						989	13	5	NaN	NaN	NaN	5.0808E-12	1	36759	116.06	106.15	1	318840			10566	1946	8903	9138	10566	10566		
IYNSIYIGSQDALIAHYPR	19	Unmodified	_IYNSIYIGSQDALIAHYPR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.047894	2193.12185	1.0073	0.00073736	0.43271	0.00031676	1.44	0.0010541	732.381826213589	13.256	0.133	13.256	13.176	13.309	0	450	64	1.02367897599655	0.0422780386363306	1.02367897599655	618.881882293721	0	25.5598803379421						389	16	3	NaN	NaN	NaN	9.7201E-06	1	34603	98.865	91.218	1	90550			10567	343	8904	9139	10567	10567		
IYPHGLVLLDLQSYDGDAQGK	21	Unmodified	_IYPHGLVLLDLQSYDGDAQGK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.06198	2301.16411	1.0794	0.00082904	-1.4863	-0.0011416	-0.40688	-0.00031251	768.395042901709	15.42	0.26615	15.42	15.322	15.588	0	585	58	0.932794566565362	0.038485045404303	0.932794566565362	563.769682923167	0	23.2598930381391						965	31	5	NaN	NaN	NaN	7.7035E-08	1	35653	148.57	143.23	1	252270			10568	1222	8905	9140	10568	10568		
IYQDAYR	7	Unmodified	_IYQDAYR_			0	0	0	Q00059	Q00059	Q00059	TFAM	Transcription factor A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.729792	927.445031	-0.42584	-0.0001979	3.088	0.0014351	2.6622	0.0012372	464.731253655556	3.5544	0.25713	3.5544	3.4746	3.7317	0	777	52	0.802556497112065	0.0347316235203058	0.802556497112065	326.230062168215	0	14.1180088143381						342	30	3	NaN	NaN	NaN	0.028411	1	2817	61.494	41.147	1	105430			10569	1495	8906	9141	10569	10569		
IYQEEEMPESGAGSEFNR	18	Unmodified	_IYQEEEMPESGAGSEFNR_			0	0	0	P35269	P35269	P35269	GTF2F1	General transcription factor IIF subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1036.94693	2071.8793	2.0726	0.0021492	-1.1438	-0.0011861	0.92878	0.00096309	1037.4472425183	8.4761	0.062083	8.4761	8.4495	8.5116	0	213	49	1.18187287897418	0.0318742099074689	1.18187287897418	476.523865936155	0	12.8514851292221						224	8	3	NaN	NaN	NaN	4.5053E-10	1	32891	123.24	101.58	1	45757			10570	968	8907	9142	10570	10570		
IYQGEDLPHPK	11	Unmodified	_IYQGEDLPHPK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	432.890944	1295.651	-1.4637	-0.0006336	0.53711	0.00023251	-0.92655	-0.0004011	432.891264279357	5.2479	0.23942	5.2479	5.1149	5.3544	0	849	31	0.753417699604308	0.0205116055659366	0.753417699604308	457.469013697746	0	12.4544777386228						535	28	3	NaN	NaN	NaN	0.058418	1	12232	15.879	11.986	1	163510			10571	2029	8908	9143	10571	10571		
IYQGEDLPHPK	11	Unmodified	_IYQGEDLPHPK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.832777	1295.651	1.9005	0.0012331	-0.48216	-0.00031284	1.4184	0.00092029	648.832495067447	5.2568	0.26601	5.2568	5.1149	5.381	0	501	40	0.98941132619024	0.0262445464858834	0.98941132619024	400.511551498059	0	10.623735299148						637	31	3	NaN	NaN	NaN	0.0012218	1	12234	72.042	46.788	1	172630			10572	2029	8908	9143	10572	10572		
IYQIYEGTSQIQR	13	Unmodified	_IYQIYEGTSQIQR_			0	0	0	P11310	P11310	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.912287	1597.81002	1.6245	0.0012995	-2.6442	-0.0021151	-1.0196	-0.00081562	799.909971803493	8.973	0.062093	8.973	8.9375	8.9996	0	390	28	1.06389100039157	0.0180617378392283	1.06389100039157	429.80050868062	0	7.29674760675596						92	8	2	NaN	NaN	NaN	0.00019255	1	21510	81.799	65.919	1	53650			10573	650	8909	9144	10573	10573		
IYQIYEGTSQIQR	13	Unmodified	_IYQIYEGTSQIQR_			0	0	0	P11310	P11310	P11310	ACADM	Medium-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.912287	1597.81002	2.1004	0.0016802	2.2485	0.0017986	4.349	0.0034788	800.416012728999	8.9642	0.12417	8.9642	8.9375	9.0617	0	351	25	1.08996939197032	0.0160316600123953	1.08996939197032	440.335879540846	0	6.47661775097816						152	15	3	NaN	NaN	NaN	4.1068E-05	1	21512	86.243	75.992	1	32228			10574	650	8909	9144	10574	10574		
IYQNIQDGSLDLNAAESGVQHK	22	Unmodified	_IYQNIQDGSLDLNAAESGVQHK_			0	0	0	P61106	P61106	P61106	RAB14	Ras-related protein Rab-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.731182	2399.17172	1.9465	0.0015586	0.36817	0.00029481	2.3146	0.0018534	801.065833243274	10.294	0.13301	10.294	10.25	10.383	0	396	64	1.05987478976334	0.0421905974214265	1.05987478976334	640.418435647566	0	25.4932343524271						806	16	5	NaN	NaN	NaN	7.2566E-30	1	36337	229.44	202.08	1	355630			10575	1329	8910	9145	10575	10575		
IYQTFVALAAQLQSIHENVK	20	Unmodified	_IYQTFVALAAQLQSIHENVK_			0	0	0	Q9BVL2	Q9BVL2	Q9BVL2	NUPL1	Nucleoporin p58/p45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.414465	2272.22157	1.2565	0.00095294	1.2842	0.00097395	2.5407	0.0019269	758.415363702023	17.716	0.18618	17.716	17.654	17.841	0	414	43	1.04781950764076	0.028132878019673	1.04781950764076	633.33772659328	0	17.0044677328289						335	22	4	NaN	NaN	NaN	0.001176	1	35392	46.206	33.523	1	73559			10576	2767	8911	9146	10576	10576		
IYSEVTCFFDHVTHR	15	Unmodified	_IYSEVTCFFDHVTHR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.633316	1909.87812	0.11778	7.51E-05	-1.1262	-0.0007181	-1.0084	-0.000643	637.966990108707	13.708	0.14187	13.708	13.664	13.806	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	539.90858813088	0	13.5239644317867						353	17	5	NaN	NaN	NaN	2.2456E-08	1	29834	151.66	130.51	1	142420			10577	1901	8912	9147	10577	10577		
IYSEVTCFFDHVTHR	15	Unmodified	_IYSEVTCFFDHVTHR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.946335	1909.87812	0.98005	0.00093688	0.33825	0.00032335	1.3183	0.0012602	956.447694434983	13.708	0.053221	13.708	13.682	13.735	0	141	28	1.2295923935727	0.017866598407567	1.2295923935727	496.043928004502	0	7.20776876995586						116	7	3	NaN	NaN	NaN	0.0001858	1	29835	63.908	53.423	1	26546			10578	1901	8912	9147	10578	10578		
IYSFNSTNDSSGPANLDK	18	Unmodified	_IYSFNSTNDSSGPANLDK_			0	0	0	Q7Z478	Q7Z478	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.444876	1928.8752	1.9631	0.0018952	-0.60848	-0.00058745	1.3546	0.0013078	965.443577002845	8.9819	0.062081	8.9819	8.9553	9.0174	0	219	40	1.17788915118882	0.0258960141762798	1.17788915118882	475.151978026531	0	10.4462651230328						162	8	3	NaN	NaN	NaN	4.324E-14	1	30259	103.17	92.921	1	26157			10579	2136	8913	9148	10579	10579		
IYSHSLLPVLR	11	Unmodified	_IYSHSLLPVLR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.259079	1296.75541	-2.2753	-0.00098579	-0.14004	-6.0676E-05	-2.4153	-0.0010465	433.259045393747	11.004	0.12416	11.004	10.959	11.083	0	801	19	0.78619514174348	0.0122778508671118	0.78619514174348	477.36692727638	0	7.45494296618676						185	15	3	NaN	NaN	NaN	0.028909	1	12270	40.502	22.166	1	37014			10580	801	8914	9149	10580	10580		
IYTVYQLSHDIDVGR	15	Unmodified	_IYTVYQLSHDIDVGR_			0	0	0	Q6YHU6	Q6YHU6	Q6YHU6	THADA	Thyroid adenoma-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.640576	1777.8999	-1.0037	-0.00059582	-0.96796	-0.00057462	-1.9716	-0.0011704	593.6396093965	13.096	0.044347	13.096	13.079	13.123	0	699	16	0.85560534332665	0.0101839878365509	0.85560534332665	518.029157086368	0	6.1659299768213						49	6	2	NaN	NaN	NaN	0.010117	1	26620	37.504	33.521	1	9532.8			10581	2096	8915	9150	10581	10581		
IYVASVHQDLSDDDIK	16	Unmodified	_IYVASVHQDLSDDDIK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.635379	1816.88431	0.52191	0.00031661	1.0339	0.00062722	1.5559	0.00094384	606.635844427441	8.7778	0.18646	8.7778	8.7334	8.9198	0	645	52	0.892219381832517	0.0345391592225333	0.892219381832517	540.10763534344	0	20.908381945389						689	22	5	NaN	NaN	NaN	1.6222E-06	1	27649	117.21	100.22	1	320150			10582	3225	8916	9151	10582	10582		
IYVDDGLISLQVK	13	Unmodified	_IYVDDGLISLQVK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.911224	1461.8079	1.4989	0.001097	-1.0347	-0.00075734	0.46413	0.0003397	731.910571301151	14.515	0.14189	14.515	14.48	14.622	0	402	34	1.05585747106793	0.0220998283327687	1.05585747106793	426.895909656744	0	8.93522712855645						289	17	4	NaN	NaN	NaN	0.00013889	1	17330	77.358	55.315	1	74842			10583	699	8917	9152	10583	10583		
IYVDDGLISLQVK	13	Unmodified	_IYVDDGLISLQVK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.911224	1461.8079	1.6658	0.0012192	1.7365	0.001271	3.4023	0.0024902	731.912505351115	14.95	0.46106	14.95	14.852	15.313	0	399	118	1.0578662689527	0.0782460861912477	1.0578662689527	427.708079739932	0	31.6358355060854						2285	53	6	NaN	NaN	NaN	9.5461E-08	1	17333	167.76	127.25	1	2247400			10584	699	8917	9152	10584	10584		
IYVEIER	7	Unmodified	_IYVEIER_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.255643	920.496732	-0.2444	-0.00011273	-0.25701	-0.00011855	-0.50141	-0.00023128	461.255599833117	7.3762	0.17728	7.3762	7.3231	7.5003	0	732	40	0.833184998970724	0.0265188764600823	0.833184998970724	338.717530284938	0	10.7808090059073						375	21	3	NaN	NaN	NaN	0.0016071	1	2716	109.11	71.499	1	125860			10585	64	8918	9153	10585	10585		
IYVGNASVAQDIPK	14	Unmodified	_IYVGNASVAQDIPK_			0	0	0	P51452	P51452	P51452	DUSP3	Dual specificity protein phosphatase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.898648	1473.78274	1.9855	0.0014651	-0.45519	-0.00033588	1.5303	0.0011292	737.898145159066	10.09	0.15076	10.09	10.028	10.179	0	372	70	1.07593298845566	0.0461832661791177	1.07593298845566	434.9795392398	0	18.6710288268194						509	18	4	NaN	NaN	NaN	1.336E-05	1	17711	75.474	53.431	1	138090			10586	1184	8919	9154	10586	10586		
IYVGNLPPDIR	11	Unmodified	_IYVGNLPPDIR_			0	0	0	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.853512	1255.69247	1.3361	0.00084023	-1.2253	-0.0007705	0.11087	6.9722E-05	628.852699337814	11.305	0.17738	11.305	11.243	11.42	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.737196738755	0	9.82951602180924						354	21	3	NaN	NaN	NaN	0.0023358	1	11095	76.572	61.81	1	147720			10587	1572	8920	9155	10587	10587		
IYVGNLPTDVR	11	Unmodified	_IYVGNLPTDVR_			0	0	0	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.843145	1245.67174	1.408	0.00087838	-0.29113	-0.00018162	1.1169	0.00069676	623.843472380331	10.223	0.23055	10.223	10.161	10.392	0	522	67	0.975277694896658	0.0444353690970316	0.975277694896658	394.957341418847	0	17.9949519356007						627	27	4	NaN	NaN	NaN	1.0944E-06	1	10801	122.44	89.04	1	297520			10588	1644	8921	9156	10588	10588		
IYVISLAEPR	10	Unmodified	_IYVISLAEPR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.837331	1159.66011	0.5058	0.00029379	1.0223	0.00059376	1.5281	0.00088755	580.838257582854	12.573	0.14186	12.573	12.502	12.644	0	519	52	0.97729762293174	0.0343530427274077	0.97729762293174	396.096955921419	0	13.9232259771035						434	17	3	NaN	NaN	NaN	5.8664E-05	1	8346	65.404	49.906	1	128470			10589	705	8922	9157	10589	10589		
IYWGTATTGK	10	Unmodified	_IYWGTATTGK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.284931	1096.55531	0.4029	0.00022131	0.37948	0.00020844	0.78238	0.00042975	549.285099925171	7.0747	0.31043	7.0747	6.9949	7.3053	0	624	40	0.906433495720521	0.026386663985959	0.906433495720521	367.624227457015	0	10.7016973763699						421	36	3	NaN	NaN	NaN	0.0033936	1	6619	58.916	39.428	1	138280			10590	1251	8923	9158	10590	10590		
KADEVLEILK	10	Unmodified	_KADEVLEILK_			0	0	1	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.342446	1156.67034	0.67553	0.00039136	-0.94184	-0.00054565	-0.26631	-0.00015428	579.341904300166	10.312	0.13298	10.312	10.259	10.392	0	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.534344689536	0	7.38666366212362						214	16	3	NaN	NaN	NaN	0.0008116	1	8257	87.942	35.351	1	63711			10591	350	8924	9159	10591	10591		
KADVEEEFLALR	12	Unmodified	_KADVEEEFLALR_			0	0	1	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.377549	1418.74054	0.91597	0.00065068	-1.0401	-0.00073883	-0.12409	-8.8148E-05	710.377843539509	12.041	0.13302	12.041	11.979	12.112	0	471	49	1.00957851518677	0.0322363117711004	1.00957851518677	408.300925009444	0	13.037238527801						331	16	3	NaN	NaN	NaN	0.034795	1	16065	54.27	49.441	1	71403			10592	1074	8925	9160	10592	10592		
KAEEELGELEAK	12	Unmodified	_KAEEELGELEAK_			0	0	1	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.345914	1344.67728	1.5242	0.0010263	-0.46427	-0.00031262	1.06	0.00071372	673.345564450599	5.4785	0.16844	5.4785	5.4342	5.6026	0	501	40	0.98941132619024	0.0262336619569801	0.98941132619024	400.357467642588	0	10.615243822334						370	20	3	NaN	NaN	NaN	0.00023985	1	13738	91.245	64.298	1	113640			10593	3321	8926	9161	10593	10593		
KAEEIANEMIEAAK	14	Unmodified	_KAEEIANEMIEAAK_			0	0	1	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.264229	1545.77086	-0.90879	-0.00046917	-0.39039	-0.00020154	-1.2992	-0.00067072	516.264181979611	8.9819	0.070964	8.9819	8.9464	9.0174	0	765	28	0.810730346695089	0.018384767783428	0.810730346695089	491.428753497713	0	11.1440302586241						208	9	4	NaN	NaN	NaN	0.00016989	1	19915	86.838	75.483	1	58495			10594	1136	8927	9162	10594	10594		
KAEEIANEMIEAAK	14	Unmodified	_KAEEIANEMIEAAK_			0	0	1	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.892706	1545.77086	2.2272	0.0017236	-0.58287	-0.00045108	1.6443	0.0012725	773.893501710495	8.9908	0.29279	8.9908	8.8931	9.1858	0	381	64	1.06991323971056	0.0421615106260795	1.06991323971056	432.358446754519	0	17.0377228456835						842	34	6	NaN	NaN	NaN	2.2013E-07	1	19916	128.68	119.87	1	382570			10595	1136	8927	9162	10595	10595		
KDDEEEDPLDQLISR	15	Unmodified	_KDDEEEDPLDQLISR_			0	0	1	Q9NYJ1	Q9NYJ1	Q9NYJ1	COA4	Cytochrome c oxidase assembly factor 4 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.286527	1800.83775	-2.0083	-0.0012076	0.21462	0.00012905	-1.7937	-0.0010785	601.286733267631	13.292	0.19513	13.292	13.194	13.389	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	484.625173549828	0	12.3761604271086						545	23	5	NaN	NaN	NaN	3.605E-08	1	27233	165.72	150.75	1	221170			10596	3115	8928	9163	10596	10596		
KDDEEEDPLDQLISR	15	Unmodified	_KDDEEEDPLDQLISR_			0	0	1	Q9NYJ1	Q9NYJ1	Q9NYJ1	COA4	Cytochrome c oxidase assembly factor 4 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.426152	1800.83775	2.0937	0.0018873	0.21474	0.00019358	2.3084	0.0020809	901.426220736566	13.3	0.10642	13.3	13.238	13.345	0	339	37	1.09798411722691	0.0240375557134762	1.09798411722691	443.143722425355	0	9.70149909251859						361	13	3	NaN	NaN	NaN	0.022005	1	27234	62.454	55.932	1	111690			10597	3115	8928	9163	10597	10597		
KDDEENYLDLFSHK	14	Unmodified	_KDDEENYLDLFSHK_			0	0	1	Q07666	Q07666	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.940691	1751.80024	-0.116	-6.7851E-05	0.31753	0.00018573	0.20153	0.00011788	584.940868380999	11.518	0.27494	11.518	11.456	11.731	0	711	46	0.847456455381371	0.030564706108142	0.847456455381371	513.154466525398	0	18.5076358293488						974	32	6	NaN	NaN	NaN	9.7285E-12	1	25940	193.34	189.09	1	1009700			10598	1569	8929	9164	10598	10598		
KDEDLFR	7	Unmodified	_KDEDLFR_			0	0	1	O75531	O75531	O75531	BANF1	Barrier-to-autointegration factor;Barrier-to-autointegration factor, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.735074	921.455596	0.07849	3.6242E-05	0.52068	0.00024042	0.59917	0.00027666	461.735686447936	4.2283	0.29261	4.2283	4.1484	4.4411	0	768	52	0.808687310729125	0.0347219621408564	0.808687310729125	328.75336781749	0	14.1154211765065						881	34	4	NaN	NaN	NaN	0.031542	1	2723	101.41	30.742	1	548160			10599	342	8930	9165	10599	10599		
KDEELDPMDPSSYSDAPR	18	Unmodified	_KDEELDPMDPSSYSDAPR_			0	0	1	O60828	O60828	O60828	PQBP1	Polyglutamine-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.633598	2050.87896	1.6394	0.0011224	0.2934	0.00020087	1.9328	0.0013233	684.96826718356	9.8154	0.19507	9.8154	9.709	9.9041	0	594	43	0.926715457081489	0.0283790126462771	0.926715457081489	560.505296554853	0	17.1644778099744						521	23	3	NaN	NaN	NaN	8.5675E-05	1	32548	83.061	81.587	1	124250			10600	286	8931	9166	10600	10600		
KDEESGGGSNPFQHLEK	17	Unmodified	_KDEESGGGSNPFQHLEK_			0	0	1	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.290383	1857.84932	0.16517	0.00010245	0.52634	0.00032649	0.69151	0.00042894	620.290734210116	5.6381	0.15967	5.6381	5.5671	5.7268	0	759	28	0.814815566123307	0.0183796540051641	0.814815566123307	493.168698838303	0	11.1243211687161						291	19	3	NaN	NaN	NaN	0.0019309	1	28643	62.494	59.206	1	86856			10601	3452	8932	9167	10601	10601		
KDEQEHEFYK	10	Unmodified	_KDEQEHEFYK_			0	0	1	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.542091	1351.60444	0.22965	0.0001037	0.52069	0.00023511	0.75034	0.00033881	451.542192598346	2.4281	0.133	2.4281	2.4015	2.5345	0	834	16	0.763668499782291	0.0102465159431113	0.763668499782291	463.490959682765	0	6.21888621729363						123	16	2	NaN	NaN	NaN	5.0229E-05	1	13922	121.8	111.71	1	28266			10602	1068	8933	9168	10602	10602		
KDPELWGSVLLESNPYR	17	Unmodified	_KDPELWGSVLLESNPYR_			0	0	1	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.34594	2002.01599	0.49196	0.0003288	-1.1569	-0.00077319	-0.66491	-0.00044439	668.342921019269	15.296	0.16844	15.296	15.189	15.358	0	534	43	0.967195187796614	0.0282966100811786	0.967195187796614	585.084562521173	0	17.1174442750226						287	20	3	NaN	NaN	NaN	0.051288	1	31674	57.042	55.772	1	62431			10603	1503	8934	9169	10603	10603		
KDPELWGSVLLESNPYR	17	Unmodified	_KDPELWGSVLLESNPYR_			0	0	1	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.34594	2002.01599	0.34838	0.00023284	-0.78303	-0.00052334	-0.43465	-0.0002905	668.67969126624	15.278	0.11527	15.278	15.216	15.331	0	585	43	0.932794566565362	0.0283672188304905	0.932794566565362	564.274622518219	0	17.1601575215063						386	14	4	NaN	NaN	NaN	0.00013124	1	31675	93.772	85.404	1	105670			10604	1503	8934	9169	10604	10604		
KDPEPEDEVPDVK	13	Unmodified	_KDPEPEDEVPDVK_			0	0	1	P82675	P82675	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.859386	1495.70422	2.1603	0.0016177	-1.8457	-0.0013822	0.31458	0.00023557	749.359451141033	5.7179	0.18626	5.7179	5.6203	5.8066	0	477	58	1.0055473068722	0.0382779809350662	1.0055473068722	406.468508693825	0	15.4729605660059						455	22	3	NaN	NaN	NaN	0.028627	1	18408	54.27	49.742	1	89826			10605	1473	8935	9170	10605	10605		
KEDALLYQSK	10	Unmodified	_KEDALLYQSK_			0	0	1	P50402	P50402	P50402	EMD	Emerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.821878	1193.6292	1.5401	0.00092068	0.31641	0.00018915	1.8565	0.0011098	597.822149759425	4.2105	0.13301	4.2105	4.1662	4.2992	0	618	34	0.910492137470517	0.0223178910428838	0.910492137470517	368.897361885997	0	9.04237476608148						315	16	3	NaN	NaN	NaN	0.00023477	1	9267	106	68.412	1	130530			10606	1162	8936	9171	10606	10606		
KEDGTFYEFGEDIPEAPER	19	Unmodified	_KEDGTFYEFGEDIPEAPER_			0	0	1	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.670929	2227.99096	0.33393	0.00024833	1.3146	0.00097763	1.6485	0.001226	744.00604461778	12.547	0.12412	12.547	12.502	12.626	0	609	73	0.916577990479294	0.0486699887510179	0.916577990479294	554.07768166591	0	29.4213420068799						868	15	5	NaN	NaN	NaN	4.6747E-05	1	34964	57.62	52.538	1	286870			10607	229	8937	9172	10607	10607		
KEDLELIMTEMEISR	15	Unmodified	_KEDLELIMTEMEISR_			0	0	1	Q9NX55	Q9NX55	Q9NX55	HYPK	Huntingtin-interacting protein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.974239	1835.90089	0.62001	0.00038005	-1.177	-0.00072149	-0.55702	-0.00034144	613.308025737466	15.535	0.097551	15.535	15.491	15.588	0	594	28	0.926715457081489	0.018242384517949	0.926715457081489	560.945971852548	0	11.0422158539966						139	12	4	NaN	NaN	NaN	0.0050261	1	28130	77.157	74.856	1	25859			10608	3097	8938	9173	10608	10608		
KEDLISAFGTDDQTEICK	18	Unmodified	_KEDLISAFGTDDQTEICK_			0	0	1	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.661377	2068.9623	0.71844	0.0004962	0.10864	7.5035E-05	0.82709	0.00057124	690.995863343147	11.234	0.15073	11.234	11.181	11.332	0	627	94	0.90440375274676	0.0628959382194596	0.90440375274676	546.978389574455	0	38.0391157086315						1121	18	5	NaN	NaN	NaN	2.6012E-10	1	32862	179.21	175.92	1	362200			10609	3376	8939	9174	10609	10609		
KEDLVFIFWAPESAPLK	17	Unmodified	_KEDLVFIFWAPESAPLK_			0	0	1	P23528;Q9Y281	P23528;Q9Y281	P23528	CFL1;CFL2	Cofilin-1;Cofilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.02766	1989.06115	-0.16993	-0.00011284	-0.087363	-5.8011E-05	-0.2573	-0.00017085	664.361980328977	18.39	0.097518	18.39	18.346	18.444	0	657	190	0.884090832094921	0.127892150327751	0.884090832094921	534.836272292463	0	77.3691553555412						773	12	4	NaN	NaN	NaN	0.00087171	1	31445	66.485	57.733	1	152460			10610	823;3335	8940	9175	10610	10610		
KEDLVFIFWAPESAPLK	17	Unmodified	_KEDLVFIFWAPESAPLK_			0	0	1	P23528;Q9Y281	P23528;Q9Y281	P23528	CFL1;CFL2	Cofilin-1;Cofilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.537852	1989.06115	1.4165	0.0014101	-0.44574	-0.00044375	0.97071	0.00096638	996.038651147096	18.381	0.097528	18.381	18.355	18.452	0	192	37	1.1958073123591	0.0238794042896202	1.1958073123591	482.275762542757	0	9.63069701432391						243	12	4	NaN	NaN	NaN	0.006829	1	31446	36.96	34.066	1	51190			10611	823;3335	8940	9175	10611	10611		
KEDLYLK	7	Unmodified	_KEDLYLK_			0	0	1	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.758018	907.501483	1.137	0.00051705	1.0244	0.00046584	2.1614	0.0009829	454.758479507609	3.7317	0.24824	3.7317	3.6785	3.9268	0	732	46	0.833184998970724	0.0305987056772422	0.833184998970724	338.788831878815	0	12.4420143980063						465	29	4	NaN	NaN	NaN	0.015048	1	2466	105.04	58.205	1	299470			10612	679	8941	9176	10612	10612		
KEDWNEIDPIK	11	Unmodified	_KEDWNEIDPIK_			0	0	1	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.848624	1385.6827	0.97862	0.00067901	-1.1235	-0.00077951	-0.14484	-0.0001005	693.847663272955	9.4164	0.16848	9.4164	9.3544	9.5228	0	528	70	0.971237000454584	0.0464455239788136	0.971237000454584	392.885032202864	0	18.788154874201						759	20	4	NaN	NaN	NaN	0.00047116	1	15004	92.707	62.358	1	394240			10613	1586	8942	9177	10613	10613		
KEEELQAALAR	11	Unmodified	_KEEELQAALAR_			0	0	1	P35579;P35749;Q7Z406	P35579	P35579	MYH9;MYH11;MYH14	Myosin-9;Myosin-11;Myosin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.343509	1256.67246	1.9294	0.0012143	3.429	0.002158	5.3584	0.0033723	629.346225026129	5.5317	0.19509	5.5317	5.4608	5.6559	0	552	37	0.955063035883597	0.0242777450705638	0.955063035883597	386.733896851245	0	9.83079294783272						519	23	4	NaN	NaN	NaN	0.0011942	1	11118	92.428	74.958	1	289470			10614	972	8943	9178	10614	10614		
KEEENASVIDSAELQAYPALVVEK	24	Unmodified	_KEEENASVIDSAELQAYPALVVEK_			0	0	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.116591	2631.32794	1.4639	0.0012855	-1.1709	-0.0010282	0.29304	0.00025732	878.449797403153	14.134	0.097549	14.134	14.099	14.196	0	462	43	1.01562323939346	0.0281950841620375	1.01562323939346	613.368114290785	0	17.0279341137044						324	12	4	NaN	NaN	NaN	1.8074E-09	1	37361	110.09	104.76	1	66153			10615	1465	8944	9179	10615	10615		
KEEILLIK	8	Unmodified	_KEEILLIK_			0	0	1	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.318243	984.621933	0.52279	0.0002579	-0.78199	-0.00038577	-0.2592	-0.00012787	493.317883731262	7.3231	0.133	7.3231	7.2875	7.4205	0	690	34	0.86171403876517	0.0223954425033767	0.86171403876517	349.979871065034	0	9.09577159843872						236	16	3	NaN	NaN	NaN	0.0032631	1	3950	96.311	30.998	1	76274			10616	867	8945	9180	10616	10616		
KEELTLEGIR	10	Unmodified	_KEELTLEGIR_			0	0	1	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.335153	1186.65575	1.1734	0.00069741	1.012	0.00060148	2.1855	0.0012989	594.336003270214	7.5713	0.23948	7.5713	7.5358	7.7753	0	588	40	0.93076847747433	0.0263391634913087	0.93076847747433	377.137896711588	0	10.6723604856169						586	28	4	NaN	NaN	NaN	1.0162E-13	1	9070	220.87	117.06	1	686870			10617	1311	8946	9181	10617	10617		
KEELVAEQALK	11	Unmodified	_KEELVAEQALK_			0	0	1	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.356085	1256.69762	2.5487	0.0016041	-0.75629	-0.00047598	1.7924	0.0011281	629.355748552646	5.0972	0.1596	5.0972	5.0617	5.2213	0	570	31	0.942920803299286	0.0202454642733264	0.942920803299286	381.817074133	0	8.19799913869559						288	19	3	NaN	NaN	NaN	0.00010368	1	11122	88.24	0	1	121280			10618	3463	8947	9182	10618	10618		
KEENLADWYSQVITK	15	Unmodified	_KEENLADWYSQVITK_			0	0	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.643986	1822.91013	-1.0693	-0.00065084	-1.0175	-0.00061932	-2.0869	-0.0012702	608.643194547927	13.815	0.12412	13.815	13.77	13.895	0	762	31	0.812773098473386	0.0204289410933094	0.812773098473386	492.002293496398	0	12.3664106138475						382	15	5	NaN	NaN	NaN	0.00019402	1	27807	85.813	80.997	1	161390			10619	565	8948	9183	10619	10619		
KEENLADWYSQVITK	15	Unmodified	_KEENLADWYSQVITK_			0	0	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.462341	1822.91013	2.4352	0.0022221	0.86743	0.0007915	3.3027	0.0030136	912.964884134165	13.815	0.21279	13.815	13.744	13.957	0	264	46	1.14797626962532	0.0299457990426275	1.14797626962532	463.277558297005	0	12.0849333115999						835	25	5	NaN	NaN	NaN	1.7443E-11	1	27811	155.57	135.68	1	618710			10620	565	8948	9183	10620	10620		
KEESEESDDDMGFGLFD	17	Unmodified	_KEESEESDDDMGFGLFD_			0	0	1	P05387;P05386	P05387;P05386	P05387	RPLP2;RPLP1	60S acidic ribosomal protein P2;60S acidic ribosomal protein P1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.383293	1948.75203	1.2813	0.0012498	0.45528	0.00044407	1.7366	0.0016939	975.383589860712	15.686	0.10639	15.686	15.65	15.757	0	264	43	1.14797626962532	0.0279513333515433	1.14797626962532	463.051594369319	0	11.2745444445509						267	13	3	NaN	NaN	NaN	0.0087229	1	30689	44.045	42.335	1	54728			10621	529;528	8949	9184	10621	10621		
KEETQPPVALK	11	Unmodified	_KEETQPPVALK_			0	0	1	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.350803	1238.68705	2.681	0.0016632	-1.1756	-0.00072926	1.5055	0.00093391	620.350025021037	4.1307	0.33698	4.1307	3.9888	4.3258	0	585	67	0.932794566565362	0.0445462106400273	0.932794566565362	377.776339010988	0	18.0409545419695						1029	39	4	NaN	NaN	NaN	2.528E-07	1	10592	127.93	113.47	1	479540			10622	2296	8950	9185	10622	10622		
KEMGTALK	8	Oxidation (M)	_KEM(Oxidation (M))GTALK_	KEM(1)GTALK	KEM(49)GTALK	0	1	1		REV__P28702	REV__P28702			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	1	893.476079	892.468803	3.0526	0.0027274	-6.1894	-0.0055301	-3.1368	-0.0028027	893.470549594962	8.414	0.2572	8.414	8.3608	8.618	0	324	415	1.1079963157843	0.276095683877807	1.1079963157843	225.326598843834	0	56.1479316468775						4101	30	4	NaN	NaN	NaN	0.073069	1	2213	49.325	11.717	1	2049500	+		10623	3490	8951	9186	10623	10623	653	
KEPAVLELEGK	11	Unmodified	_KEPAVLELEGK_			0	0	1	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.845353	1211.67615	1.5771	0.00095707	-0.066331	-4.0253E-05	1.5108	0.00091682	606.845469282223	6.8707	0.18622	6.8707	6.8264	7.0126	0	573	40	0.940896116921038	0.0263209282177764	0.940896116921038	381.151028611392	0	10.6624405009146						477	22	4	NaN	NaN	NaN	0.063946	1	9790	42.446	24.043	1	251110			10624	1516	8952	9187	10624	10624		
KEPEAFDWSPVVTYVCDLEGNR	22	Unmodified	_KEPEAFDWSPVVTYVCDLEGNR_			0	0	1	P40261	P40261	P40261	NNMT	Nicotinamide N-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.075961	2610.20605	0.57929	0.00050461	-0.70075	-0.0006104	-0.12146	-0.0001058	871.409870810949	19.011	0.11529	19.011	18.949	19.064	0	552	82	0.955063035883597	0.0545758442821291	0.955063035883597	576.818350413934	0	32.9615400120064						747	14	5	NaN	NaN	NaN	5.4435E-08	1	37275	107.84	107.24	1	170460			10625	1017	8953	9188	10625	10625		
KEPFELEAFYTNLHEVPYPDAR	22	Unmodified	_KEPFELEAFYTNLHEVPYPDAR_			0	0	1	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	667.078781	2664.28602	0.91331	0.00060925	0.5793	0.00038644	1.4926	0.00099569	667.330084365413	15.437	0.15974	15.437	15.358	15.517	0	531	49	0.969216233931596	0.0323434604594182	0.969216233931596	780.402932014325	0	26.0426213370677						489	19	6	NaN	NaN	NaN	0.00057106	1	37486	46.353	43.903	1	116260			10626	450	8954	9189	10626	10626		
KEPLFGISTGNLITGLAAGAK	21	Unmodified	_KEPLFGISTGNLITGLAAGAK_			0	0	1	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.72464	2057.15209	-0.66849	-0.00045907	-1.1115	-0.00076329	-1.78	-0.0012224	687.058276760472	16.36	0.13301	16.36	16.298	16.431	0	651	64	0.888155670855968	0.0426778685344582	0.888155670855968	537.172181928202	0	25.8123260515865						658	16	5	NaN	NaN	NaN	0.0015531	1	32665	42.072	34.424	1	207660			10627	922	8955	9190	10627	10627		
KEPVDEDLYPEHYR	14	Unmodified	_KEPVDEDLYPEHYR_			0	0	1	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.284569	1788.83188	0.67708	0.00040441	2.2833	0.0013638	2.9604	0.0017682	597.285464896625	6.3742	0.15072	6.3742	6.2944	6.4451	0	627	61	0.90440375274676	0.0406089550100428	0.90440375274676	547.548437878013	0	24.5856674212999						449	18	3	NaN	NaN	NaN	0.004021	1	26941	65.408	54.436	1	103250			10628	849	8956	9191	10628	10628		
KFDEVLVNHFCEEFGK	16	Unmodified	_KFDEVLVNHFCEEFGK_			0	0	1	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.652376	1996.9353	0.73956	0.00049303	-0.51481	-0.0003432	0.22474	0.00014983	666.986520321207	12.626	0.23056	12.626	12.573	12.804	0	606	58	0.918606045818476	0.0385384095033867	0.918606045818476	555.701297403868	0	23.3134152103605						966	27	6	NaN	NaN	NaN	2.8877E-33	1	31575	290.23	279.75	1	558270			10629	955	8957	9192	10629	10629		
KFDFDACNEVPPAPK	15	Unmodified	_KFDFDACNEVPPAPK_			0	0	1	Q15424;Q14151	Q15424;Q14151	Q15424	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.943379	1733.80831	-1.6558	-0.0009586	-1.7257	-0.00099909	-3.3815	-0.0019577	578.942499730389	9.044	0.20396	9.044	9.0085	9.2125	0	822	22	0.771863999559055	0.0143371313465699	0.771863999559055	467.419531686575	0	8.68217098293343						198	24	3	NaN	NaN	NaN	0.00015222	1	25433	77.157	73.175	1	35814			10630	1846;1727	8958	9193	10630	10630		
KFDLGQDVIDFTGHALALYR	20	Unmodified	_KFDLGQDVIDFTGHALALYR_			0	0	1	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	570.550931	2278.17462	-1.2268	-0.00069996	1.4501	0.00082733	0.22325	0.00012738	570.802859999779	19.357	0.04432	19.357	19.33	19.375	0	681	19	0.867820189810857	0.0122097592878956	0.867820189810857	699.373721930134	0	9.8398088651378						67	6	3	NaN	NaN	NaN	0.013445	1	35451	34.33	26.33	1	11451			10631	1161;920	8959	9194	10631	10631		
KFDLGQDVIDFTGHALALYR	20	Unmodified	_KFDLGQDVIDFTGHALALYR_			0	0	1	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.398815	2278.17462	0.82657	0.00062852	-0.46655	-0.00035476	0.36002	0.00027376	760.73269872637	19.348	0.1419	19.348	19.304	19.446	0	474	49	1.00756305028564	0.0322585904613818	1.00756305028564	608.995697055722	0	19.4978793421363						581	17	6	NaN	NaN	NaN	1.1014E-10	1	35452	113.66	109.81	1	300590			10632	1161;920	8959	9194	10632	10632		
KFDLNSPWEAFPVYR	15	Unmodified	_KFDLNSPWEAFPVYR_			0	0	1	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.649183	1867.92572	0.013725	8.5597E-06	-1.0874	-0.00067818	-1.0737	-0.00066962	623.98296514076	16.191	0.15075	16.191	16.129	16.28	0	642	34	0.894250814548268	0.0223488632159498	0.894250814548268	541.225427031164	0	13.5261526642541						376	18	5	NaN	NaN	NaN	2.3454E-06	1	28880	121.96	110.48	1	130020			10633	338	8960	9195	10633	10633		
KFDQLLAEEK	10	Unmodified	_KFDQLLAEEK_			0	0	1	P35579;P35580;P35749;Q7Z406	P35579	P35579	MYH9;MYH10;MYH11;MYH14	Myosin-9;Myosin-10;Myosin-11;Myosin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.829703	1219.64485	1.7632	0.001077	0.037591	2.2962E-05	1.8007	0.0010999	610.82989624683	6.9062	0.23062	6.9062	6.8619	7.0925	0	540	34	0.963152256458504	0.0222407417065758	0.963152256458504	390.138139412847	0	9.00891996086915						516	27	4	NaN	NaN	NaN	1.9766E-13	1	10012	191.24	126.08	1	318030			10634	972	8961	9196	10634	10634		
KFDVNTSAVQVLIEHIGNLDR	21	Unmodified	_KFDVNTSAVQVLIEHIGNLDR_			0	0	1	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.092163	2367.25466	1.1588	0.00091553	-4.0269	-0.0031816	-2.8681	-0.0022661	790.424373681871	18.754	0.15961	18.754	18.692	18.851	0	426	49	1.03977710643793	0.0321696140017538	1.03977710643793	628.323391771565	0	19.4396672675449						764	19	7	NaN	NaN	NaN	0.025438	1	36201	46.353	39.831	1	222580			10635	1503	8962	9197	10635	10635		
KFDVNTSAVQVLIEHIGNLDR	21	Unmodified	_KFDVNTSAVQVLIEHIGNLDR_			0	0	1	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	592.820941	2367.25466	-0.89693	-0.00053172	0.81619	0.00048385	-0.08074	-4.7865E-05	593.072149026671	18.754	0.070921	18.754	18.718	18.789	0	657	31	0.884090832094921	0.0203270164952024	0.884090832094921	712.32389199329	0	16.3777509921285						135	9	4	NaN	NaN	NaN	0.016724	1	36202	33.5	28.666	1	22494			10636	1503	8962	9197	10636	10636		
KFEDEYSEYLK	11	Unmodified	_KFEDEYSEYLK_			0	0	1	Q9H2H8	Q9H2H8	Q9H2H8	PPIL3	Peptidyl-prolyl cis-trans isomerase-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.840465	1449.66638	1.638	0.0011889	1.8633	0.0013525	3.5013	0.0025414	725.841171254945	9.0972	0.15075	9.0972	9.0085	9.1592	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	418.800802757595	0	7.32131045224554						215	18	3	NaN	NaN	NaN	0.00027082	1	16965	112.93	95.456	1	62258			10637	2867	8963	9198	10637	10637		
KFEEFQTDMAAHEER	15	Unmodified	_KFEEFQTDMAAHEER_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.28083	1866.82066	1.1302	0.00070444	1.5509	0.00096663	2.6811	0.0016711	623.281731479636	6.4096	0.12414	6.4096	6.3653	6.4895	0	636	28	0.898312834727904	0.0182752899876304	0.898312834727904	543.686233848049	0	11.0607610197012						322	15	5	NaN	NaN	NaN	8.2667E-12	1	28859	167.59	162.77	1	108240			10638	1703	8964	9199	10638	10638		
KFESEILEAISQNSVVIIR	19	Unmodified	_KFESEILEAISQNSVVIIR_			0	0	1	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.738838	2174.19468	0.16028	0.00011632	0.29574	0.00021463	0.45603	0.00033096	726.073456934223	18.213	0.133	18.213	18.178	18.311	0	483	40	1.00151498427745	0.0262191597817407	1.00151498427745	605.515425774062	0	15.8520900315165						423	16	5	NaN	NaN	NaN	4.4078E-07	1	34369	124.62	111.28	1	131830			10639	1575	8965	9200	10639	10639		
KGDECELLGHSK	12	Unmodified	_KGDECELLGHSK_			0	0	1	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.222364	1371.64526	0.03415	1.5648E-05	0.43938	0.00020133	0.47353	0.00021698	458.222812102161	2.9513	0.45222	2.9513	2.907	3.3592	0	825	37	0.769815552739974	0.0245830782650249	0.769815552739974	467.152763858398	0	14.9179279566111						876	52	5	NaN	NaN	NaN	4.2611E-11	1	14525	180.81	176.92	1	347040			10640	1131	8966	9201	10640	10640		
KGDECELLGHSK	12	Unmodified	_KGDECELLGHSK_			0	0	1	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.829908	1371.64526	2.1784	0.0014962	-0.94649	-0.00065008	1.2319	0.00084614	686.829343423722	2.9513	0.097541	2.9513	2.9247	3.0222	0	552	43	0.955063035883597	0.0283122781138182	0.955063035883597	386.381394315461	0	11.4540476207871						209	12	2	NaN	NaN	NaN	0.03482	1	14526	54.199	47.452	1	43718			10641	1131	8966	9201	10641	10641		
KGDEVQCEIEELGVIINK	18	Unmodified	_KGDEVQCEIEELGVIINK_			0	0	1	Q96GK7;Q6P2I3	Q96GK7	Q96GK7	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	691.689267	2072.04597	0.43497	0.00030086	-1.223	-0.00084595	-0.78806	-0.00054509	692.023038431502	16.147	0.097534	16.147	16.111	16.209	0	573	31	0.940896116921038	0.0202482682426971	0.940896116921038	569.043134395668	0	12.245919416283						309	12	5	NaN	NaN	NaN	0.0001235	1	32898	69.201	67.93	1	85754			10642	2543	8967	9202	10642	10642		
KGDILLDENCCVESLPDK	18	Unmodified	_KGDILLDENCCVESLPDK_			0	0	1	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.334495	2103.98166	0.45567	0.00032003	0.96217	0.00067576	1.4178	0.00099579	702.335444743294	10.383	0.079798	10.383	10.356	10.436	0	630	34	0.902373728295776	0.0223302721813649	0.902373728295776	545.690135771846	0	13.5037278639358						160	10	4	NaN	NaN	NaN	0.021518	1	33369	42.218	41.407	1	25722			10643	3209	8968	9203	10643	10643		
KGEFETGFEK	10	Unmodified	_KGEFETGFEK_			0	0	1	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.285128	1170.5557	1.9761	0.0011585	1.7535	0.0010281	3.7296	0.0021866	586.285214762476	4.9465	0.30146	4.9465	4.8933	5.1947	0	618	46	0.910492137470517	0.0304334915876326	0.910492137470517	368.980437744217	0	12.333289422231						828	35	4	NaN	NaN	NaN	1.1628E-07	1	8619	163.43	115.27	1	267880			10644	709;2224	8969	9204	10644	10644		
KGEIFELK	8	Unmodified	_KGEIFELK_			0	0	1	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.279118	962.543683	0.49456	0.00023851	0.075579	3.645E-05	0.57013	0.00027496	482.279124002183	6.9683	0.21289	6.9683	6.9151	7.128	0	684	43	0.86578508874114	0.0284973564255872	0.86578508874114	351.744389444616	0	11.577682922766						355	25	3	NaN	NaN	NaN	0.0026544	1	3500	111.39	59.962	1	153330			10645	1423;1587	8970	9205	10645	10645		
KGEITGEVHMPSGK	14	Unmodified	_KGEITGEVHMPSGK_			0	0	1	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.585414	1468.73441	-0.018335	-8.995E-06	0.91664	0.00044969	0.8983	0.00044069	490.585845750799	4.7071	0.20391	4.7071	4.5563	4.7603	0	750	25	0.820941264895493	0.0163317905819258	0.820941264895493	497.849472926852	0	9.90420835307691						241	24	2	NaN	NaN	NaN	0.029522	1	17544	40.224	38.968	1	60562			10646	326	8971	9206	10646	10646		
KGESQTDIEITREEDFTR	18	Unmodified	_KGESQTDIEITREEDFTR_			0	0	2	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.681828	2153.02366	1.6171	0.0011621	-0.99315	-0.00071376	0.6239	0.00044839	719.016464995768	7.1989	0.16846	7.1989	7.1191	7.2875	0	513	37	0.981336640919867	0.0242307604673273	0.981336640919867	593.352618136769	0	14.6508186520548						237	20	4	NaN	NaN	NaN	0.057562	1	34082	14.004	9.932	1	56446			10647	1129	8972	9207	10647	10647		
KHDFVDLIIK	10	Unmodified	_KHDFVDLIIK_			0	0	1	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	409.908046	1226.70231	-1.8719	-0.00076732	-1.6849	-0.00069067	-3.5569	-0.001458	409.907293103445	10.507	0.062113	10.507	10.48	10.543	0	855	19	0.749315378969369	0.0123086780485644	0.749315378969369	455.247374764878	0	7.47815075695121						77	8	2	NaN	NaN	NaN	0.057437	1	10207	36.24	32.347	1	18433			10648	1962	8973	9208	10648	10648		
KHEAFETDFTVHK	13	Unmodified	_KHEAFETDFTVHK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	397.949316	1587.76816	-0.73211	-0.00029134	-0.47319	-0.0001883	-1.2053	-0.00047965	397.948989876739	5.0174	0.13301	5.0174	4.9819	5.1149	0	864	22	0.743159753061487	0.0143671335481833	0.743159753061487	600.483119590059	0	11.6088379881173						226	16	4	NaN	NaN	NaN	0.054564	1	21196	35.33	33.956	1	59806			10649	1703	8974	9209	10649	10649		
KHEAFETDFTVHK	13	Unmodified	_KHEAFETDFTVHK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.263329	1587.76816	-0.045873	-2.4325E-05	1.001	0.00053077	0.95509	0.00050645	530.263663291498	5.0263	0.097522	5.0263	4.9908	5.0883	0	768	28	0.808687310729125	0.0183873254729269	0.808687310729125	490.075380567732	0	11.1429663965455						200	12	4	NaN	NaN	NaN	8.8369E-06	1	21198	136.06	115.88	1	51153			10650	1703	8974	9209	10650	10650		
KHPDASVNFSEFSK	14	Unmodified	_KHPDASVNFSEFSK_			0	0	1	P09429	P09429	P09429	HMGB1	High mobility group protein B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.594967	1591.76307	-0.71638	-0.00038082	0.31102	0.00016534	-0.40536	-0.00021549	531.595070333947	6.6136	0.16848	6.6136	6.5693	6.7377	0	795	127	0.790287188799094	0.0857778583889126	0.790287188799094	478.914281690586	0	51.9814088062186						1027	20	4	NaN	NaN	NaN	0.00024201	1	21322	99.589	81.082	1	303490			10651	601	8975	9210	10651	10651		
KHPEVDVLINFASLR	15	Unmodified	_KHPEVDVLINFASLR_			0	0	1	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.993061	1736.95735	-1.1099	-0.00064375	-1.2204	-0.0007078	-2.3303	-0.0013516	580.326699238855	14.019	0.10641	14.019	13.966	14.072	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	513.188862796419	0	9.8720845784955						234	13	4	NaN	NaN	NaN	0.00415	1	25526	54.199	52.489	1	51722			10652	1235	8976	9211	10652	10652		
KIDAAQNWLADPNGGPEGEEQIR	23	Unmodified	_KIDAAQNWLADPNGGPEGEEQIR_			0	0	1	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.74197	2507.20408	1.6068	0.0013444	-0.43676	-0.00036545	1.17	0.00097899	837.075765146684	10.853	0.062063	10.853	10.826	10.888	0	570	25	0.942920803299286	0.0161986138950868	0.942920803299286	569.608853113378	0	9.78541766235503						129	8	3	NaN	NaN	NaN	0.00039199	1	36863	42.028	35.038	1	25366			10653	753	8977	9212	10653	10653		
KIEDLGAAMEEALILDNK	18	Unmodified	_KIEDLGAAMEEALILDNK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.346841	1972.01869	-1.457	-0.00095919	-0.77972	-0.00051332	-2.2367	-0.0014725	658.68093914466	16.679	0.10641	16.679	16.635	16.741	0	693	28	0.85967808974117	0.0183235429829339	0.85967808974117	520.098748588546	0	11.0856050524699						228	13	4	NaN	NaN	NaN	0.0011401	1	31146	54.912	47.706	1	41807			10654	1703	8978	9213	10654	10654		
KIEDLGAAMEEALILDNK	18	Unmodified	_KIEDLGAAMEEALILDNK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.016623	1972.01869	0.83352	0.0008227	-2.8703	-0.002833	-2.0367	-0.0020103	988.014742642062	16.679	0.18624	16.679	16.581	16.768	0	198	31	1.1918274123006	0.0198995025431339	1.1918274123006	480.699441558338	0	8.02606120739279						261	22	3	NaN	NaN	NaN	0.01439	1	31147	44.16	35.004	1	55546			10655	1703	8978	9213	10655	10655		
KIEDLGAAMEEALILDNK	18	Unmodified	_KIEDLGAAMEEALILDNK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.346841	1972.01869	-0.31139	-0.00020501	0.35908	0.0002364	0.047684	3.1393E-05	658.348974538299	16.679	0.10641	16.679	16.644	16.75	0	549	31	0.957085760909907	0.0202258527858471	0.957085760909907	579.029649024906	0	12.2364880119879						258	13	4	NaN	NaN	NaN	0.0075027	1	31148	62.711	62.559	1	64777			10656	1703	8978	9213	10656	10656		
KIEDNNTLVFIVDVK	15	Unmodified	_KIEDNNTLVFIVDVK_			0	0	1	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.985452	1745.95635	2.5275	0.002209	-0.5599	-0.00048934	1.9677	0.0017197	874.486205650759	13.903	0.23055	13.903	13.85	14.081	0	285	61	1.13399579921816	0.0399909592124241	1.13399579921816	457.787872935374	0	16.144130487188						611	27	4	NaN	NaN	NaN	0.02065	1	25783	45.654	39.955	1	132620			10657	1395	8979	9214	10657	10657		
KIEEAMDGSETPQLFTVLPEK	21	Unmodified	_KIEEAMDGSETPQLFTVLPEK_			0	0	1	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.066403	2361.17738	0.79573	0.00062709	-1.1714	-0.00092311	-0.37562	-0.00029601	788.399858244437	14.134	0.10639	14.134	14.081	14.187	0	582	58	0.934820374997243	0.0384903768248059	0.934820374997243	564.907914628127	0	23.259568454973						541	13	5	NaN	NaN	NaN	5.0285E-11	1	36141	91.1	88.354	1	118390			10658	1667	8980	9215	10658	10658		
KIEEQLTLEK	10	Unmodified	_KIEEQLTLEK_			0	0	1	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.850635	1229.68672	1.9944	0.0012282	1.573	0.00096875	3.5674	0.002197	615.851622133632	5.7534	0.16845	5.7534	5.7091	5.8775	0	573	31	0.940896116921038	0.0202454642733264	0.940896116921038	381.088147447048	0	8.19995569688899						273	20	4	NaN	NaN	NaN	0.0028424	1	10307	108.4	73.62	1	130910			10659	916	8981	9216	10659	10659		
KIEFVVVGPEAPLAAGIVGNLR	22	Unmodified	_KIEFVVVGPEAPLAAGIVGNLR_			0	0	1	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.438723	2248.29434	0.00016494	1.2378E-07	-0.50173	-0.00037652	-0.50157	-0.0003764	750.772504857625	17.912	0.16847	17.912	17.823	17.991	0	567	40	0.944945209309785	0.0263172834355764	0.944945209309785	571.193924107307	0	15.9080889022032						574	20	5	NaN	NaN	NaN	3.6671E-06	1	35172	75.006	73.911	1	158190			10660	801	8982	9217	10660	10660		
KIEFVVVGPEAPLAAGIVGNLR	22	Unmodified	_KIEFVVVGPEAPLAAGIVGNLR_			0	0	1	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.438723	2248.29434	0.39227	0.00029437	1.7899	0.0013432	2.1822	0.0016376	750.774831310209	17.912	0.079775	17.912	17.876	17.956	0	360	16	1.08395544855938	0.0100246205738916	1.08395544855938	655.221859850724	0	6.05961300849822						74	10	3	NaN	NaN	NaN	0.021313	1	35173	30.172	30.172	1	12298			10661	801	8982	9217	10661	10661		
KIEIDNGDELTADFLYEEVHPK	22	Unmodified	_KIEIDNGDELTADFLYEEVHPK_			0	0	1	Q12792	Q12792	Q12792	TWF1	Twinfilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.090264	2574.24896	1.7738	0.0015238	2.9164	0.0025055	4.6902	0.0040293	859.427305938471	14.932	0.19508	14.932	14.897	15.092	0	303	28	1.12200181823275	0.0180045964949538	1.12200181823275	677.692552949796	0	10.8748317206069						243	23	4	NaN	NaN	NaN	0.0094203	1	37134	34.579	30.207	1	57492			10662	1595	8983	9218	10662	10662		
KIEIGDGAELTAEFLYDEVHPK	22	Unmodified	_KIEIGDGAELTAEFLYDEVHPK_			0	0	1	Q6IBS0	Q6IBS0	Q6IBS0	TWF2	Twinfilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.419833	2473.23767	1.539	0.0012703	2.586	0.0021346	4.125	0.0034049	825.422841336195	17.14	0.17733	17.14	17.043	17.22	0	330	37	1.10399226369747	0.024034244886211	1.10399226369747	666.960949148233	0	14.5199412246615						382	21	4	NaN	NaN	NaN	0.00042897	1	36695	53.193	52.495	1	96082			10663	2037	8984	9219	10663	10663		
KIEPELDGSAQVTSHDASTNGLINFIK	27	Unmodified	_KIEPELDGSAQVTSHDASTNGLINFIK_			0	0	1	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	721.87263	2883.46142	1.1596	0.00083707	-0.098794	-7.1316E-05	1.0608	0.00076575	722.372903865305	13.309	0.204	13.309	13.221	13.425	1.7764E-15	459	31	1.01763759082241	0.0201449080035752	1.01763759082241	819.068157582823	0	16.2140754547297						361	24	5	NaN	NaN	NaN	0.017623	1	38052	27.344	26.788	1	87636			10664	546	8985	9220	10664	10664		
KIEPELDGSSPVTSHDSSTNGLINFIK	27	Unmodified	_KIEPELDGSSPVTSHDSSTNGLINFIK_			0	0	1	CON__Q3ZBD7	CON__Q3ZBD7	CON__Q3ZBD7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	722.118634	2884.44543	1.8345	0.0013247	-0.18755	-0.00013543	1.6469	0.0011893	722.369391870787	13.522	0.31922	13.522	13.407	13.726	0	477	142	1.0055473068722	0.0946355448139061	1.0055473068722	809.335700465579	0	76.16938997047						936	37	5	NaN	NaN	NaN	0.03011	1	38054	33.093	25.344	1	249260		+	10665	42	8986	9221	10665	10665		
KIEPELDGSSPVTSHDSSTNGLINFIK	27	Unmodified	_KIEPELDGSSPVTSHDSSTNGLINFIK_			0	0	1	CON__Q3ZBD7	CON__Q3ZBD7	CON__Q3ZBD7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	962.489087	2884.44543	2.0696	0.001992	0.321	0.00030896	2.3906	0.0023009	962.824055934407	13.496	0.15962	13.496	13.451	13.611	1.7764E-15	399	64	1.0578662689527	0.0421789590923636	1.0578662689527	638.585348664846	0	25.4615031113369						628	19	4	NaN	NaN	NaN	0.045989	1	38055	4.9061	4.8718	1	110950		+	10666	42	8986	9221	10666	10666		
KIEQELTAAK	10	Unmodified	_KIEQELTAAK_			0	0	1	Q9H444	Q9H444	Q9H444	CHMP4B	Charged multivesicular body protein 4b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.824421	1129.63429	1.761	0.00099641	0.86115	0.00048726	2.6221	0.0014837	565.824875119427	3.5189	0.15074	3.5189	3.4923	3.6431	0	639	28	0.896281965493857	0.0182778248645526	0.896281965493857	363.374915941626	0	7.41028306878064						222	18	3	NaN	NaN	NaN	0.00027883	1	7529	79.311	50.001	1	62761			10667	2889	8987	9222	10667	10667		
KIPGIYVLSLEIGK	14	Unmodified	_KIPGIYVLSLEIGK_			0	0	1	P50897	P50897	P50897	PPT1	Palmitoyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.648232	1528.92287	-0.77712	-0.00039683	-2.1226	-0.0010839	-2.8997	-0.0014808	510.647182589034	15.526	0.079815	15.526	15.491	15.571	0	717	22	0.84338031290707	0.0142694733102946	0.84338031290707	511.26966193427	0	8.65036648791005						143	10	3	NaN	NaN	NaN	0.025785	1	19404	42.061	39.39	1	29586			10668	1172	8988	9223	10668	10668		
KIPNPDFFEDLEPFR	15	Unmodified	_KIPNPDFFEDLEPFR_			0	0	1	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.98071	1862.9203	-0.44287	-0.00027545	-1.0816	-0.00067273	-1.5245	-0.00094818	622.314315911946	17.025	0.58528	17.025	16.839	17.424	0	696	136	0.857641857947968	0.0914781329251489	0.857641857947968	519.078940113497	0	55.3662019201829						5447	67	4	NaN	NaN	NaN	1.5464E-07	1	28761	144.51	117.14	1	2182000			10669	870	8989	9224	10669	10669		
KIPNPDFFEDLEPFR	15	Unmodified	_KIPNPDFFEDLEPFR_			0	0	1	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.467426	1862.9203	0.81641	0.00076128	1.6002	0.0014922	2.4167	0.0022535	932.97015853596	17.025	0.5498	17.025	16.847	17.397	0	228	76	1.17191150690002	0.0498548261502012	1.17191150690002	472.860161108364	0	20.1161614905321						1440	63	5	NaN	NaN	NaN	0.00070171	1	28764	34.472	32.336	1	541820			10670	870	8989	9224	10670	10670		
KLDEAVAEAHLGK	13	Unmodified	_KLDEAVAEAHLGK_			0	0	1	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.877716	1379.74088	1.6593	0.0011463	-1.3799	-0.00095335	0.27934	0.00019299	690.877808921007	5.2568	0.15076	5.2568	5.2036	5.3544	0	465	67	1.01360860968299	0.0443433168599838	1.01360860968299	410.042651321702	0	17.9385327235458						595	18	3	NaN	NaN	NaN	0.0015941	1	14820	86.838	70.959	1	192380			10671	822	8990	9225	10671	10671		
KLDEAVAEAHLGK	13	Unmodified	_KLDEAVAEAHLGK_			0	0	1	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.920903	1379.74088	-1.2139	-0.00055952	3.1323	0.0014437	1.9184	0.00088422	460.922732200994	5.2479	0.33696	5.2479	5.1947	5.5317	0	780	55	0.800512323802183	0.0367874548810231	0.800512323802183	485.752294543128	0	22.322692715065						965	39	5	NaN	NaN	NaN	1.324E-07	1	14821	197.3	159.71	1	640870			10672	822	8990	9225	10672	10672		
KLDEEALLK	9	Unmodified	_KLDEEALLK_			0	0	1	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.808239	1057.60193	0.62785	0.00033264	-0.052141	-2.7625E-05	0.57571	0.00030501	529.808460428876	6.658	0.10641	6.658	6.6136	6.72	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	362.02473203222	0	8.24326392093815						146	13	2	NaN	NaN	NaN	0.024395	1	5666	78.816	45.42	1	55312			10673	194	8991	9226	10673	10673		
KLDLEAWFPGSGAFR	15	Unmodified	_KLDLEAWFPGSGAFR_			0	0	1	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.29474	1692.86239	-2.1552	-0.0012183	0.33544	0.00018962	-1.8198	-0.0010287	565.29481449867	16.918	0.13303	16.918	16.865	16.998	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	500.943331337999	0	11.1246057759966						276	16	4	NaN	NaN	NaN	0.028637	1	24286	42.446	35.306	1	62737			10674	1139	8992	9227	10674	10674		
KLDPELHLDIK	11	Unmodified	_KLDPELHLDIK_			0	0	1	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.922244	1319.7449	-1.8466	-0.00081421	-0.38532	-0.0001699	-2.2319	-0.00098411	440.922255212738	8.7599	0.23963	8.7599	8.7068	8.9464	0	816	43	0.775960037304758	0.0286722708949075	0.775960037304758	471.065925140234	0	17.4062183174987						612	28	4	NaN	NaN	NaN	5.064E-05	1	12985	88.24	64.404	1	400910			10675	1605	8993	9228	10675	10675		
KLDPGSEETQTLVR	14	Unmodified	_KLDPGSEETQTLVR_			0	0	1	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.945777	1571.8155	1.1378	0.00059727	-0.17099	-8.9762E-05	0.96679	0.00050751	524.945778928036	6.0727	0.23056	6.0727	5.9751	6.2057	0	696	52	0.857641857947968	0.0346207605842022	0.857641857947968	519.788051581441	0	20.982485313143						545	27	4	NaN	NaN	NaN	7.0913E-06	1	20726	159.12	134.3	1	300740			10676	859	8994	9229	10676	10676		
KLDPGSEETQTLVR	14	Unmodified	_KLDPGSEETQTLVR_			0	0	1	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.915027	1571.8155	3.3069	0.0026022	-1.044	-0.00082156	2.2628	0.0017807	786.914361593716	6.0727	0.30154	6.0727	6.0195	6.321	0	417	55	1.04580932352505	0.0361858246299764	1.04580932352505	422.555740080894	0	14.6207607476841						1122	35	6	NaN	NaN	NaN	0.00092928	1	20727	105.08	81.242	1	1397900			10677	859	8994	9229	10677	10677		
KLDSLTTSFGFPVGAATLVDEVGVDVAK	28	Unmodified	_KLDSLTTSFGFPVGAATLVDEVGVDVAK_			0	0	1	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	946.170807	2835.49059	1.3708	0.001297	-0.46793	-0.00044274	0.90288	0.00085428	946.504729147453	19.685	0.070937	19.685	19.649	19.72	0	390	88	1.06389100039157	0.0582953976332581	1.06389100039157	642.27541573568	0	35.1931736771879						468	9	5	NaN	NaN	NaN	2.3611E-06	1	37969	73.948	71.498	1	105430			10678	1026	8995	9230	10678	10678		
KLEAAEDIAYQLSR	14	Unmodified	_KLEAAEDIAYQLSR_			0	0	1	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.286022	1605.83624	-1.4546	-0.00078009	-0.85551	-0.0004588	-2.3101	-0.0012389	536.285506805418	11.287	0.097545	11.287	11.243	11.341	0	777	43	0.802556497112065	0.0286283916090748	0.802556497112065	486.312770566571	0	17.3475044939171						220	12	3	NaN	NaN	NaN	0.0037222	1	21781	53.051	46.674	1	49608			10679	960	8996	9231	10679	10679		
KLEAAEDIAYQLSR	14	Unmodified	_KLEAAEDIAYQLSR_			0	0	1	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.925394	1605.83624	2.1523	0.0017303	-2.5935	-0.002085	-0.44122	-0.00035471	803.923364024921	11.279	0.15079	11.279	11.234	11.385	0	375	37	1.07392668217569	0.024074020010092	1.07392668217569	433.836180223091	0	9.72522711013528						346	18	4	NaN	NaN	NaN	1.1254E-06	1	21782	93.649	80.431	1	130560			10680	960	8996	9231	10680	10680		
KLEAAEDIAYQLSR	14	Unmodified	_KLEAAEDIAYQLSR_			0	0	1	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.286022	1605.83624	-0.029701	-1.5928E-05	0.011181	5.996E-06	-0.018521	-9.9323E-06	536.286158702966	11.27	0.079812	11.27	11.234	11.314	0	705	34	0.851531465363931	0.0224110012963066	0.851531465363931	515.98937216847	0	13.5800483703862						204	10	3	NaN	NaN	NaN	0.00028508	1	21783	81.48	65.898	1	59909			10681	960	8996	9231	10681	10681		
KLEDQLQGGQLEEVILQAEHELNLAR	26	Unmodified	_KLEDQLQGGQLEEVILQAEHELNLAR_			0	0	1	Q16718	Q16718	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	744.146455	2972.55671	0.2971	0.00022109	-0.54696	-0.00040702	-0.24986	-0.00018593	744.396706180538	19.862	0.044336	19.862	19.845	19.889	0	537	22	0.965173861991602	0.0141512395446776	0.965173861991602	776.729847105114	0	11.3883006582921						101	6	5	NaN	NaN	NaN	1.1832E-06	1	38175	86.997	83.634	1	27976			10682	1902	8997	9232	10682	10682		
KLEDQLQGGQLEEVILQAEHELNLAR	26	Unmodified	_KLEDQLQGGQLEEVILQAEHELNLAR_			0	0	1	Q16718	Q16718	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	991.859514	2972.55671	1.5509	0.0015383	-0.44438	-0.00044076	1.1066	0.0010976	992.527188043832	19.862	0.053221	19.862	19.845	19.898	0	207	67	1.18585551256002	0.0437849366905276	1.18585551256002	715.74474325459	0	26.4271978652155						175	7	5	NaN	NaN	NaN	0.00040492	1	38176	44.584	41.816	1	42153			10683	1902	8997	9232	10683	10683		
KLEEEGEQFVK	11	Unmodified	_KLEEEGEQFVK_			0	0	1	P22307	P22307	P22307	SCP2	Non-specific lipid-transfer protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.343175	1334.6718	1.8614	0.001244	0.10168	6.796E-05	1.963	0.001312	668.343403829883	5.443	0.19506	5.443	5.3987	5.5937	0	441	40	1.02971785871157	0.0261684967549374	1.02971785871157	416.698961422608	0	10.5896827247586						453	23	5	NaN	NaN	NaN	5.7268E-08	1	13428	160.98	134.03	1	236110			10684	803	8998	9233	10684	10684		
KLEEEQIILEDQNCK	15	Unmodified	_KLEEEQIILEDQNCK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.315541	1887.92479	1.3767	0.00086778	-0.66011	-0.00041608	0.71662	0.00045169	630.314782123605	7.9438	0.097524	7.9438	7.8995	7.997	0	591	94	0.928742107665821	0.0629133807759191	0.928742107665821	562.056662493294	0	38.0739545813791						700	12	5	NaN	NaN	NaN	1.1374E-06	1	29325	166.65	159.09	1	224100			10685	972	8999	9234	10685	10685		
KLEEEQIILEDQNCK	15	Unmodified	_KLEEEQIILEDQNCK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.969673	1887.92479	2.8889	0.0027299	-1.8309	-0.0017301	1.0581	0.00099983	944.968420113803	7.9438	0.20408	7.9438	7.8995	8.1036	0	267	58	1.14597988355104	0.0379470051045476	1.14597988355104	462.351629164672	0	15.3099193832631						699	24	5	NaN	NaN	NaN	1.3506E-07	1	29326	102.57	92.546	1	269940			10686	972	8999	9234	10686	10686		
KLEELELDEQQK	12	Unmodified	_KLEELELDEQQK_			0	0	1	P36507	P36507	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.390853	1500.76715	1.9432	0.0014601	-1.4245	-0.0010703	0.51872	0.00038976	751.389855346432	6.5781	0.16849	6.5781	6.5249	6.6934	0	429	46	1.03776581230406	0.0301777503680323	1.03776581230406	419.479094599965	0	12.1982582692143						464	20	4	NaN	NaN	NaN	3.4549E-16	1	18550	140.57	105.24	1	159590			10687	984	9000	9235	10687	10687		
KLEELLIK	8	Unmodified	_KLEELLIK_			0	0	1	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.318243	984.621933	0.46226	0.00022804	-0.15844	-7.8161E-05	0.30382	0.00014988	493.318045723362	7.997	0.13315	7.997	7.9615	8.0947	0	675	34	0.871889544407995	0.0223767933297507	0.871889544407995	354.112587216892	0	9.08819727273595						172	16	3	NaN	NaN	NaN	0.048186	1	3951	69.716	11.43	1	47833			10688	2107	9001	9236	10688	10688		
KLEENPYDLDAWSILIR	17	Unmodified	_KLEENPYDLDAWSILIR_			0	0	1	Q12996	Q12996	Q12996	CSTF3	Cleavage stimulation factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.365112	2074.07351	-0.14503	-0.00010041	-1.8541	-0.0012837	-1.9991	-0.0013841	692.363931718474	18.107	0.070909	18.107	18.08	18.151	0	537	19	0.965173861991602	0.0121271162843546	0.965173861991602	583.722242516061	0	7.33429259900345						119	9	3	NaN	NaN	NaN	0.01629	1	32937	55.782	55.66	1	27101			10689	1617	9002	9237	10689	10689		
KLEGDSTDLSDQIAELQAQIAELK	24	Unmodified	_KLEGDSTDLSDQIAELQAQIAELK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	872.451862	2614.33376	0.31223	0.0002724	-0.34835	-0.00030392	-0.036124	-3.1516E-05	872.785740559822	19.206	0.070945	19.206	19.179	19.25	0	486	70	0.999498404980629	0.0464198396417231	0.999498404980629	603.650415526098	0	28.0354179143729						644	9	5	NaN	NaN	NaN	1.4457E-24	1	37292	147.08	123.3	1	196730			10690	972	9003	9238	10690	10690		
KLELDILPLQEANAELSEK	19	Unmodified	_KLELDILPLQEANAELSEK_			0	0	1	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.394848	2152.16271	-0.092149	-6.6199E-05	-1.5508	-0.0011141	-1.6429	-0.0011803	718.727779997974	16.307	0.12411	16.307	16.253	16.377	0	606	52	0.918606045818476	0.0344721745325131	0.918606045818476	555.424793001482	0	20.8432118329597						396	15	4	NaN	NaN	NaN	3.0922E-07	1	34072	130.12	108.76	1	89839			10691	667	9004	9239	10691	10691		
KLELSDNIISGGLEVLAEK	19	Unmodified	_KLELSDNIISGGLEVLAEK_			0	0	1	Q9BTT0	Q9BTT0	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.712289	2027.11504	0.4965	0.00033599	-0.18688	-0.00012647	0.30961	0.00020952	676.712134464399	17.459	0.17734	17.459	17.388	17.566	0	531	64	0.969216233931596	0.0424243792604825	0.969216233931596	586.257206641706	0	25.6615574605762						567	21	4	NaN	NaN	NaN	0.00022559	1	32104	91.457	81.546	1	192940			10692	2737	9005	9240	10692	10692		
KLELSDNIISGGLEVLAEK	19	Unmodified	_KLELSDNIISGGLEVLAEK_			0	0	1	Q9BTT0	Q9BTT0	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.56479	2027.11504	0.84367	0.00085596	1.2651	0.0012835	2.1088	0.0021395	1015.06761649142	17.468	0.10639	17.468	17.415	17.521	0	129	91	1.23753038177212	0.0595349733296937	1.23753038177212	499.037967082286	0	24.0076627599268						779	13	4	NaN	NaN	NaN	1.1023E-09	1	32105	82.725	80.336	1	196250			10693	2737	9005	9240	10693	10693		
KLEMDLK	7	Unmodified	_KLEMDLK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	438.746596	875.478639	-1.1388	-0.00049964	0.35721	0.00015673	-0.78157	-0.00034291	438.747049179112	4.9642	0.21279	4.9642	4.9287	5.1415	0	753	43	0.81889964927511	0.0285766640115467	0.81889964927511	333.161636851791	0	11.6261475582244						259	25	3	NaN	NaN	NaN	0.056592	1	1945	58.286	4.6066	1	56821			10694	972	9006	9241	10694	10694		
KLEMTELLLQQFSSR	15	Unmodified	_KLEMTELLLQQFSSR_			0	0	1	Q08379	Q08379	Q08379	GOLGA2	Golgin subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.329233	1821.96587	-2.2068	-0.0013424	0.46619	0.0002836	-1.7406	-0.0010588	608.329601885366	16.377	0.070928	16.377	16.351	16.422	0	738	19	0.829104889055312	0.0122420319698213	0.829104889055312	501.890500234012	0	7.41059379859058						111	9	3	NaN	NaN	NaN	0.0015888	1	27775	45.183	43.047	1	21386			10695	1577	9007	9242	10695	10695		
KLENCNYAVELGK	13	Unmodified	_KLENCNYAVELGK_			0	0	1	P13797;P13796	P13797	P13797	PLS3;LCP1	Plastin-3;Plastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.38759	1536.76063	2.5346	0.0019501	-1.8472	-0.0014212	0.68736	0.00052884	769.386472650909	6.4806	0.16847	6.4806	6.4363	6.6047	0	396	58	1.05987478976334	0.0381724416536884	1.05987478976334	428.324144187062	0	15.4265188310569						670	20	5	NaN	NaN	NaN	1.737E-10	1	19630	100.69	0	1	234170			10696	683	9008	9243	10696	10696		
KLEPIWNEVGLEMK	14	Unmodified	_KLEPIWNEVGLEMK_			0	0	1	Q96JJ7	Q96JJ7	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.635886	1684.88583	-1.1287	-0.00063505	-1.3711	-0.00077143	-2.4998	-0.0014065	562.969369791169	14.515	0.097547	14.515	14.462	14.56	0	750	19	0.820941264895493	0.0122488425219203	0.820941264895493	497.253712715515	0	7.4192669816249						132	12	3	NaN	NaN	NaN	0.013651	1	24056	48.822	44.295	1	24027			10697	2569	9009	9244	10697	10697		
KLESFYIQK	9	Unmodified	_KLESFYIQK_			0	0	1	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.324057	1154.63356	0.71861	0.00041559	-0.53685	-0.00031048	0.18175	0.00010511	578.323943998898	6.5693	0.14187	6.5693	6.5249	6.6668	0	615	31	0.912521036363781	0.0202847729162148	0.912521036363781	369.862052016235	0	8.2218024971466						252	17	3	NaN	NaN	NaN	0.00061026	1	8200	88.181	37.346	1	82307			10698	562	9010	9245	10698	10698		
KLETEETVPETDVETK	16	Unmodified	_KLETEETVPETDVETK_			0	0	1	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.459661	1846.90477	2.7586	0.0025502	-1.7632	-0.00163	0.99539	0.0009202	924.96000278343	5.8155	0.11523	5.8155	5.78	5.8953	0	282	37	1.13599383354359	0.0239747667739112	1.13599383354359	458.396957182878	0	9.67431319943722						297	14	4	NaN	NaN	NaN	0.0010215	1	28411	54.556	51.841	1	80373			10699	1540	9011	9246	10699	10699		
KLEVEANNAFDQYR	14	Unmodified	_KLEVEANNAFDQYR_			0	0	1	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.918101	1695.82165	2.4779	0.0021035	-0.89507	-0.00075984	1.5828	0.0013437	849.418753698825	8.3342	0.18632	8.3342	8.2366	8.4229	0	360	52	1.08395544855938	0.0340884182480441	1.08395544855938	437.688754633881	0	13.7645115860201						483	22	4	NaN	NaN	NaN	0.015271	1	24367	47.915	47.108	1	195940			10700	1100	9012	9247	10700	10700		
KLEVEANNAFDQYR	14	Unmodified	_KLEVEANNAFDQYR_			0	0	1	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.281159	1695.82165	0.41184	0.00023322	1.6536	0.00093638	2.0654	0.0011696	566.282694061012	8.3342	0.13306	8.3342	8.2898	8.4229	0	708	67	0.849494101904619	0.0447877946260573	0.849494101904619	514.521448949587	0	27.1270641368655						504	16	5	NaN	NaN	NaN	7.3486E-06	1	24368	150.21	144.71	1	151390			10701	1100	9012	9247	10701	10701		
KLEVEYEQK	9	Unmodified	_KLEVEYEQK_			0	0	1	Q9Y2W2	Q9Y2W2	Q9Y2W2	WBP11	WW domain-binding protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.308603	1164.60265	2.8304	0.001651	-1.5173	-0.00088503	1.3132	0.00076598	583.307499408677	3.8381	0.18616	3.8381	3.7938	3.98	0	573	40	0.940896116921038	0.0263318671085498	0.940896116921038	381.324481037533	0	10.6717260060281						305	22	3	NaN	NaN	NaN	3.5567E-05	1	8465	111.61	78.211	1	76814			10702	3356	9013	9248	10702	10702		
KLPAIALDLLR	11	Unmodified	_KLPAIALDLLR_			0	0	1	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.897723	1221.78089	0.58912	0.00036048	1.0274	0.00062869	1.6166	0.00098917	611.898324407179	15.118	0.15074	15.118	15.03	15.18	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	397.496194851605	0	8.17900994748032						280	18	3	NaN	NaN	NaN	0.027083	1	10079	56.202	52.309	1	69372			10703	2698	9014	9249	10703	10703		
KLPGFPTQDDEVMMLTER	18	Unmodified	_KLPGFPTQDDEVMMLTER_			0	0	1	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.011464	2106.01256	0.41015	0.00028834	-0.81045	-0.00056975	-0.40029	-0.00028141	703.345514868812	14.329	0.11526	14.329	14.267	14.382	0	621	43	0.908462957275599	0.0284144382573517	0.908462957275599	549.368995247776	0	17.1828815594027						330	14	4	NaN	NaN	NaN	1.7992E-05	1	33402	84.58	80.025	1	67022			10704	2849	9015	9250	10704	10704		
KLPIDVTEGEVISLGLPFGK	20	Unmodified	_KLPIDVTEGEVISLGLPFGK_			0	0	1	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.736546	2111.18781	0.62969	0.00044376	-1.4049	-0.0009901	-0.77524	-0.00054634	705.069816862865	18.523	0.11533	18.523	18.479	18.594	0	597	208	0.924688525662974	0.13970415722533	0.924688525662974	559.172010232084	0	84.4810466069728						2074	14	4	NaN	NaN	NaN	8.448E-09	1	33481	137.89	127.13	1	868330			10705	856	9016	9251	10705	10705		
KLPIDVTEGEVISLGLPFGK	20	Unmodified	_KLPIDVTEGEVISLGLPFGK_			0	0	1	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1056.60118	2111.18781	0.72089	0.0007617	0.16996	0.00017958	0.89085	0.00094128	1057.10296237694	18.523	0.070949	18.523	18.488	18.559	0	99	46	1.25735632164274	0.0297205829948761	1.25735632164274	506.895476258484	0	11.9816704402335						274	9	4	NaN	NaN	NaN	0.0046365	1	33482	33.5	31.259	1	68648			10706	856	9016	9251	10706	10706		
KLQEESDLELAK	12	Unmodified	_KLQEESDLELAK_			0	0	1	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.874839	1401.73512	2.2307	0.0015656	-2.3712	-0.0016643	-0.14055	-9.8651E-05	701.874351757569	5.9307	0.12421	5.9307	5.8953	6.0195	0	405	34	1.05384839605172	0.0221028774104899	1.05384839605172	426.254785344009	0	8.94004991741804						283	15	4	NaN	NaN	NaN	0.0021119	1	15515	64.266	48.386	1	81631			10707	363	9017	9252	10707	10707		
KLTTDPDLILEVLR	14	Unmodified	_KLTTDPDLILEVLR_			0	0	1	Q71RC2	Q71RC2	Q71RC2	LARP4	La-related protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.653934	1624.93997	-2.0144	-0.0010931	-0.59667	-0.00032378	-2.6111	-0.0014169	542.987726785374	17.016	0.070948	17.016	16.998	17.069	0	711	19	0.847456455381371	0.0122267289803111	0.847456455381371	513.46853661192	0	7.40809819455052						94	9	3	NaN	NaN	NaN	0.018524	1	22342	61.194	53.229	1	16248			10708	2104	9018	9253	10708	10708		
KMEDSVGCLETAEEVK	16	Unmodified	_KMEDSVGCLETAEEVK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.921334	1823.82812	2.7743	0.0025327	-0.9685	-0.00088417	1.8058	0.0016485	912.921214157986	7.8197	0.1951	7.8197	7.7664	7.9615	0	294	73	1.12800004657306	0.0480155903203239	1.12800004657306	455.214225522526	0	19.3771089168633						688	23	4	NaN	NaN	NaN	0.02277	1	27821	52.201	45.679	1	146400			10709	972	9019	9254	10709	10709		
KMELSDEVR	9	Unmodified	_KMELSDEVR_			0	0	1	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.779156	1105.54376	1.5071	0.00083462	2.0561	0.0011386	3.5632	0.0019732	553.7804830311	4.4765	0.13299	4.4765	4.4411	4.5741	0	621	25	0.908462957275599	0.0162368192859779	0.908462957275599	368.410134870967	0	6.58453791111253						139	16	3	NaN	NaN	NaN	0.054757	1	6861	48.157	17.596	1	38371		+	10710	22	9020	9255	10710	10710		
KNEELEQLYQDQEVPK	16	Unmodified	_KNEELEQLYQDQEVPK_			0	0	1	Q9NVS9	Q9NVS9	Q9NVS9	PNPO	Pyridoxine-5-phosphate oxidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.491827	1988.9691	1.9894	0.0019804	-2.3376	-0.002327	-0.34817	-0.0003466	995.991017200529	9.1238	0.079803	9.1238	9.106	9.1858	0	243	28	1.16194328902838	0.0179526604527893	1.16194328902838	468.618369396907	0	7.2404105666443						109	10	3	NaN	NaN	NaN	0.020603	1	31433	48.363	47.347	1	16919			10711	3074	9021	9256	10711	10711		
KNEELEQLYQDQEVPK	16	Unmodified	_KNEELEQLYQDQEVPK_			0	0	1	Q9NVS9	Q9NVS9	Q9NVS9	PNPO	Pyridoxine-5-phosphate oxidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.996977	1988.9691	0.62526	0.00041517	1.2517	0.00083114	1.877	0.0012463	664.332027076216	9.1326	0.088671	9.1326	9.0883	9.177	0	624	58	0.906433495720521	0.0385544403778527	0.906433495720521	548.352776843546	0	23.3237568345146						404	11	4	NaN	NaN	NaN	0.00064081	1	31434	68.108	58.952	1	93812			10712	3074	9021	9256	10712	10712		
KPAEQAEETAPIEATATK	18	Unmodified	_KPAEQAEETAPIEATATK_			0	0	1	Q8N4Q1	Q8N4Q1	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.981095	1883.94764	2.9378	0.0027703	-2.4496	-0.0023099	0.4882	0.00046036	942.978308845557	4.6184	0.062116	4.6184	4.5918	4.6539	0	264	43	1.14797626962532	0.0279513333515433	1.14797626962532	463.164216608384	0	11.27728661077						221	8	3	NaN	NaN	NaN	0.007717	1	29241	38.668	30.704	1	43541			10713	2253	9022	9257	10713	10713		
KPANDITSQLEINFGDLGR	19	Unmodified	_KPANDITSQLEINFGDLGR_			0	0	1	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.695521	2087.06473	-0.33709	-0.00023485	-1.2564	-0.00087535	-1.5935	-0.0011102	697.02889189286	15.154	0.15079	15.154	15.109	15.26	0	717	85	0.84338031290707	0.0570185034225358	0.84338031290707	510.042288305147	0	34.4824837813939						1210	18	5	NaN	NaN	NaN	1.8889E-10	1	33137	117.03	103.26	1	445150			10714	2296	9023	9258	10714	10714		
KPDSMVTNSSTENEA	15	Unmodified	_KPDSMVTNSSTENEA_			0	0	1	O43237	O43237	O43237	DYNC1LI2	Cytoplasmic dynein 1 light intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.354142	1608.69373	2.8862	0.0023244	-2.0235	-0.0016296	0.86271	0.00069479	805.352467187983	3.6696	0.14184	3.6696	3.6431	3.7849	0	459	34	1.01763759082241	0.0221578688893902	1.01763759082241	411.090723575502	0	8.95101992770248						267	17	3	NaN	NaN	NaN	0.00017277	1	21861	72.031	70.881	1	49815			10715	190	9024	9259	10715	10715		
KPEDVLDDDDAGSAPLK	17	Unmodified	_KPEDVLDDDDAGSAPLK_			0	0	1	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.623139	1783.84759	0.30541	0.00018191	0.050455	3.0052E-05	0.35586	0.00021196	595.623163263563	7.6422	0.15968	7.6422	7.5801	7.7398	0	723	61	0.839303037468863	0.0407614442197906	0.839303037468863	508.145769657363	0	24.6785183905397						625	19	4	NaN	NaN	NaN	3.8183E-05	1	26788	109.47	97.449	1	213210			10716	976	9025	9260	10716	10716		
KPEDVLDDDDAGSAPLK	17	Unmodified	_KPEDVLDDDDAGSAPLK_			0	0	1	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.931071	1783.84759	3.3631	0.003003	-1.9926	-0.0017792	1.3705	0.0012238	892.92982360379	7.6511	0.21288	7.6511	7.5447	7.7576	0	318	61	1.11199926528787	0.0400240026056418	1.11199926528787	448.832873542089	0	16.1547661593966						875	25	4	NaN	NaN	NaN	0.012126	1	26789	53.363	50.884	1	262820			10717	976	9025	9260	10717	10717		
KPEDWDEEMDGEWEPPVIQNPEYK	24	Unmodified	_KPEDWDEEMDGEWEPPVIQNPEYK_			0	0	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	987.435883	2959.28582	2.0827	0.0020566	-1.2709	-0.0012549	0.81188	0.00080168	987.769022862704	14.56	0.34578	14.56	14.347	14.693	-1.7764E-15	447	127	1.02569221487577	0.0846087815290922	1.02569221487577	619.08819657842	0	51.0682417316458						3890	40	6	NaN	NaN	NaN	6.47E-33	1	38157	147.01	146.49	1	1355400			10718	868	9026	9261	10718	10718		
KPEDWDEEMDGEWEPPVIQNPEYK	24	Oxidation (M)	_KPEDWDEEM(Oxidation (M))DGEWEPPVIQNPEYK_	KPEDWDEEM(1)DGEWEPPVIQNPEYK	KPEDWDEEM(67)DGEWEPPVIQNPEYK	0	1	1	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	992.767521	2975.28073	1.8682	0.0018547	-0.38815	-0.00038534	1.4801	0.0014694	993.101524266249	13.008	0.18619	13.008	12.901	13.088	0	456	100	1.01965166402748	0.0664461448776935	1.01965166402748	615.426751221788	0	40.1046126985865						1822	22	5	NaN	NaN	NaN	2.7927E-09	1	38178	66.553	66.404	1	422290			10719	868	9026	9262	10719	10719	295	
KPEDWDERPK	10	Unmodified	_KPEDWDERPK_			0	0	2	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.882448	1298.62551	-0.4947	-0.00021464	0.23055	0.00010003	-0.26416	-0.00011461	433.882571960634	2.7208	0.070965	2.7208	2.6941	2.7651	0	867	13	0.741107305531458	0.00821036266673503	0.741107305531458	449.983388586016	0	4.98514423852316						57	9	2	NaN	NaN	NaN	0.061746	1	12308	22.044	20.541	1	10353			10720	870	9027	9263	10720	10720		
KPELWSDNFTDFVK	14	Unmodified	_KPELWSDNFTDFVK_			0	0	1	Q13043	Q13043	Q13043	STK4	Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.954272	1724.84099	-1.0677	-0.00061497	-1.6072	-0.00092567	-2.6749	-0.0015406	576.287348998103	14.462	0.10642	14.462	14.418	14.524	0	720	31	0.841341816837976	0.0203920467361437	0.841341816837976	509.514364702664	0	12.3493692216587						158	13	3	NaN	NaN	NaN	0.053989	1	25188	35.845	29.099	1	24387			10721	1620	9028	9264	10721	10721		
KPEMFETAIK	10	Unmodified	_KPEMFETAIK_			0	0	1	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.315374	1192.6162	1.2908	0.000771	-0.28024	-0.00016739	1.0105	0.0006036	597.315543187729	6.4983	0.25716	6.4983	6.4363	6.6934	0	579	40	0.936845902828289	0.0263355149208984	0.936845902828289	379.578608838583	0	10.6702693437028						482	30	3	NaN	NaN	NaN	0.009599	1	9237	64.906	54.204	1	171000			10722	1459	9029	9265	10722	10722		
KPEPQVLAALLHALPLK	17	Unmodified	_KPEPQVLAALLHALPLK_			0	0	1	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.380256	1837.11894	-0.13669	-8.3846E-05	0.010269	6.2989E-06	-0.12643	-7.7547E-05	613.714519310565	17.965	0.23939	17.965	17.876	18.115	0	600	28	0.922661313351899	0.0182474411105494	0.922661313351899	558.48919776785	0	11.0452216860858						481	28	3	NaN	NaN	NaN	5.9946E-07	1	28169	91.032	91.032	1	156670			10723	2356	9030	9266	10723	10723		
KPEVFNFSAIHLIHDPQDFAEK	22	Unmodified	_KPEVFNFSAIHLIHDPQDFAEK_			0	0	1	Q9NVU7	Q9NVU7	Q9NVU7	SDAD1	Protein SDA1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	646.331407	2581.29652	0.098339	6.356E-05	0.081758	5.2843E-05	0.1801	0.0001164	646.332096134856	14.161	0.11527	14.161	14.107	14.223	1.7764E-15	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	725.068131392131	0	13.0813405216392						234	14	4	NaN	NaN	NaN	0.00087997	1	37167	13.559	13.045	1	46478			10724	3076	9031	9267	10724	10724		
KPFEEHWR	8	Unmodified	_KPFEEHWR_			0	0	1	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	376.857686	1127.55123	-0.18462	-6.9576E-05	-0.4465	-0.00016827	-0.63112	-0.00023784	376.857340266272	3.6962	0.11526	3.6962	3.6342	3.7494	0	909	19	0.712342960434231	0.0123396214770952	0.712342960434231	433.207214345963	0	7.50426879058011						91	14	2	NaN	NaN	NaN	0.019335	1	7453	51.43	42.667	1	16789			10725	919	9032	9268	10725	10725		
KPGDLSDELR	10	Unmodified	_KPGDLSDELR_			0	0	1	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.296027	1128.5775	2.3541	0.0013308	-1.422	-0.00080387	0.93208	0.0005269	565.295733981358	5.1327	0.15074	5.1327	5.0706	5.2213	0	591	46	0.928742107665821	0.030408192841195	0.928742107665821	376.539323207017	0	12.3283743225002						325	18	3	NaN	NaN	NaN	0.0091301	1	7486	61.48	45.898	1	142130			10726	1667	9033	9269	10726	10726		
KPGMFFNPEESELDLTYGNR	20	Unmodified	_KPGMFFNPEESELDLTYGNR_			0	0	1	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.035325	2343.08415	0.71433	0.00055863	-0.6588	-0.0005152	0.055534	4.343E-05	782.369186633154	14.072	0.15961	14.072	14.028	14.187	0	567	46	0.944945209309785	0.0303703038284173	0.944945209309785	571.052090606759	0	18.3534720560656						592	19	4	NaN	NaN	NaN	1.5289E-05	1	35979	63.79	61.045	1	111770			10727	653	9034	9270	10727	10727		
KPGMFFNPEESELDLTYGNR	20	Unmodified	_KPGMFFNPEESELDLTYGNR_			0	0	1	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.035325	2343.08415	1.4698	0.0011494	0.23504	0.00018381	1.7048	0.0013333	782.36959807661	14.081	0.1862	14.081	13.992	14.178	0	468	133	1.01159370163332	0.0885643682909119	1.01159370163332	611.329301873486	0	53.5214813523766						1786	22	4	NaN	NaN	NaN	4.1877E-09	1	35981	164.3	161.91	1	419680			10728	653	9034	9270	10728	10728		
KPGMFFNPEESELDLTYGNR	20	Oxidation (M)	_KPGM(Oxidation (M))FFNPEESELDLTYGNR_	KPGM(1)FFNPEESELDLTYGNR	KPGM(75)FFNPEESELDLTYGNR	0	1	1	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.366964	2359.07906	1.8337	0.0014438	-0.8112	-0.00063871	1.0225	0.00080506	787.700466249498	12.857	0.079835	12.857	12.822	12.901	0	570	64	0.942920803299286	0.0425007768501061	0.942920803299286	569.805930948578	0	25.683169397023						414	10	4	NaN	NaN	NaN	2.3795E-05	1	36118	74.643	71.202	1	79921			10729	653	9034	9271	10729	10729	195	
KPIPDEHLILK	11	Unmodified	_KPIPDEHLILK_			0	0	1	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	434.930851	1301.77072	-1.7186	-0.00074746	-0.45627	-0.00019844	-2.1748	-0.00094591	434.930423856326	6.7289	0.23941	6.7289	6.6225	6.8619	0	861	16	0.745211914437924	0.0102593767125468	0.745211914437924	452.464126845704	0	6.22910052333884						218	28	2	NaN	NaN	NaN	0.045354	1	12414	43.168	35.522	1	48972			10730	400	9035	9272	10730	10730		
KPLFHGDSEIDQLFR	15	Unmodified	_KPLFHGDSEIDQLFR_			0	0	1	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.312571	1800.91588	-0.36876	-0.00022174	-0.54649	-0.00032861	-0.91525	-0.00055035	601.646281672819	12.219	0.23944	12.219	12.157	12.396	0	687	52	0.863749705078866	0.034615952502899	0.863749705078866	522.908520073283	0	20.9562751660392						1082	28	5	NaN	NaN	NaN	4.5968E-33	1	27241	277.1	245.67	1	399040			10731	540	9036	9273	10731	10731		
KPLLESGTLGTK	12	Unmodified	_KPLLESGTLGTK_			0	0	1	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.366453	1242.71835	2.6463	0.001647	0.49572	0.00030852	3.1421	0.0019555	622.366994710068	5.7002	0.20395	5.7002	5.6559	5.8598	0	528	49	0.971237000454584	0.0323345110128962	0.971237000454584	393.331228009073	0	13.0948192025455						451	24	4	NaN	NaN	NaN	2.0019E-10	1	10719	150.44	104	1	464420			10732	804	9037	9274	10732	10732		
KPLLPYTPGSDVAGVIEAVGDNASAFK	27	Unmodified	_KPLLPYTPGSDVAGVIEAVGDNASAFK_			0	0	1	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.144592	2715.41195	0.91939	0.0008331	-0.38675	-0.00035045	0.53263	0.00048264	906.478438329641	18.488	0.13307	18.488	18.444	18.577	0	441	58	1.02971785871157	0.0382198802455282	1.02971785871157	621.779107813352	0	23.0784800309599						482	16	4	NaN	NaN	NaN	5.4812E-06	1	37652	49.65	49.136	1	82517			10733	1576	9038	9275	10733	10733		
KPLPDHVSIVEPK	13	Unmodified	_KPLPDHVSIVEPK_			0	0	1	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.919384	1457.82421	2.5217	0.0018406	-1.7668	-0.0012897	0.75487	0.00055099	729.918156246327	6.1968	0.4966	6.1968	6.0106	6.5072	0	375	124	1.07392668217569	0.0824177135294586	1.07392668217569	434.212637127453	0	33.3233295453094						3012	57	3	NaN	NaN	NaN	0.0012691	1	17212	87.573	61.96	1	886860			10734	819	9039	9276	10734	10734		
KPLPDHVSIVEPK	13	Unmodified	_KPLPDHVSIVEPK_			0	0	1	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.948681	1457.82421	0.99036	0.00048226	-0.14299	-6.9628E-05	0.84737	0.00041263	486.948722536569	6.1791	0.39899	6.1791	5.9663	6.3653	0	711	82	0.847456455381371	0.0550012205584762	0.847456455381371	513.965125693419	0	33.3571230216273						1876	46	4	NaN	NaN	NaN	0.0029585	1	17213	47.57	43.324	1	1317200			10735	819	9039	9276	10735	10735		
KPLPDHVSIVEPK	13	Unmodified	_KPLPDHVSIVEPK_			0	0	1	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.948681	1457.82421	0.57433	0.00027967	0.2683	0.00013065	0.84263	0.00041032	486.949068974798	6.2944	0.3902	6.2944	6.2411	6.6313	0	702	58	0.853568545818287	0.0386937946002025	0.853568545818287	517.671982384671	0	23.4670003420397						593	45	2	NaN	NaN	NaN	0.056403	1	17214	48.701	45.093	1	375290			10736	819	9039	9276	10736	10736		
KPLVIIAEDVDGEALSTLVLNR	22	Unmodified	_KPLVIIAEDVDGEALSTLVLNR_			0	0	1	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.116085	2364.32643	1.0367	0.00081808	-1.4078	-0.0011109	-0.37113	-0.00029287	789.449271661435	18.328	0.47888	18.328	18.204	18.683	0	555	193	0.953040030838688	0.129374436402553	0.953040030838688	575.913489196709	0	78.1798042794526						3231	55	6	NaN	NaN	NaN	8.3545E-17	1	36170	168.74	160.37	1	1275400			10737	635	9040	9277	10737	10737		
KPLVIIAEDVDGEALSTLVLNR	22	Unmodified	_KPLVIIAEDVDGEALSTLVLNR_			0	0	1	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.116085	2364.32643	0.55693	0.00043949	-0.63939	-0.00050455	-0.082452	-6.5064E-05	789.450071630926	17.699	0.088647	17.699	17.654	17.743	0	561	37	0.948993180460448	0.0242811063417099	0.948993180460448	573.4680114602	0	14.6728533529376						316	11	4	NaN	NaN	NaN	2.3389E-16	1	36171	109.42	105.57	1	64166			10738	635	9040	9277	10738	10738		
KPLVIIAEDVDGEALSTLVLNR	22	Unmodified	_KPLVIIAEDVDGEALSTLVLNR_			0	0	1	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.116085	2364.32643	1.1342	0.00089501	0.10352	8.1691E-05	1.2377	0.0009767	789.450274279512	18.328	0.15073	18.328	18.248	18.399	0	387	46	1.06589869032374	0.0301195105360905	1.06589869032374	644.112952851812	0	18.200948219535						390	18	4	NaN	NaN	NaN	0.00010487	1	36172	66.913	63.472	1	77432			10739	635	9040	9277	10739	10739		
KPLVLCGDLNVAHEEIDLR	19	Unmodified	_KPLVLCGDLNVAHEEIDLR_			0	0	1	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	548.543948	2190.14669	-0.29268	-0.00016055	-0.7709	-0.00042287	-1.0636	-0.00058342	548.793663817579	12.307	0.11527	12.307	12.263	12.378	0	657	46	0.884090832094921	0.0305053430673474	0.884090832094921	712.659477018969	0	24.590145093062						287	14	4	NaN	NaN	NaN	0.00021709	1	34566	80.128	77.413	1	71543			10740	866	9041	9278	10740	10740		
KPLVLCGDLNVAHEEIDLR	19	Unmodified	_KPLVLCGDLNVAHEEIDLR_			0	0	1	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.056172	2190.14669	1.3157	0.00096188	-0.69006	-0.00050447	0.62568	0.00045741	731.38943818016	12.307	0.19509	12.307	12.227	12.423	0	447	67	1.02569221487577	0.0442698808649449	1.02569221487577	620.104320674638	0	26.7643099966676						767	23	6	NaN	NaN	NaN	2.1669E-26	1	34567	243.95	224.31	1	481780			10741	866	9041	9278	10741	10741		
KPSETQELVQQVLSLATQDSDNPDLR	26	Unmodified	_KPSETQELVQQVLSLATQDSDNPDLR_			0	0	1	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	971.159629	2910.45706	1.4873	0.0014444	-1.5326	-0.0014884	-0.045247	-4.3942E-05	971.492879768505	19.446	0.070947	19.446	19.41	19.481	0	441	55	1.02971785871157	0.0362208047125181	1.02971785871157	621.566787628017	0	21.8639009122671						325	9	4	NaN	NaN	NaN	1.346E-10	1	38090	83.358	74.147	1	66951			10742	1423	9042	9279	10742	10742		
KPTETQELVQQVLSLATQDSDNPDLR	26	Unmodified	_KPTETQELVQQVLSLATQDSDNPDLR_			0	0	1	Q10567	Q10567	Q10567	AP1B1	AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	975.831513	2924.47271	1.1221	0.001095	-1.3463	-0.0013138	-0.22421	-0.00021879	976.164214991185	19.49	0.08868	19.49	19.437	19.525	0	438	34	1.03173026378327	0.022130347528504	1.03173026378327	622.767333645987	0	13.3581983651889						193	11	4	NaN	NaN	NaN	1.1598E-06	1	38111	71.892	66.328	1	34464			10743	1587	9043	9280	10743	10743		
KPTFMDEEVQSILTK	15	Unmodified	_KPTFMDEEVQSILTK_			0	0	1	P82650	P82650	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.306205	1764.89679	-1.6072	-0.00094715	-1.2194	-0.0007186	-2.8266	-0.0016657	589.305779671467	13.788	0.12413	13.788	13.744	13.868	0	780	40	0.800512323802183	0.0265668641501883	0.800512323802183	484.700504130229	0	16.0859140626267						249	15	3	NaN	NaN	NaN	0.00022696	1	26266	79.795	73.048	1	51536			10744	1469	9044	9281	10744	10744		
KPVADCVISIPSFFTDAER	19	Unmodified	_KPVADCVISIPSFFTDAER_			0	0	1	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.029623	2151.06704	0.16817	0.00012075	-2.1563	-0.0015483	-1.9882	-0.0014276	718.362683433885	16.608	0.17735	16.608	16.502	16.679	0	636	61	0.898312834727904	0.0406033237034125	0.898312834727904	543.156506221073	0	24.5504222929075						1042	21	4	NaN	NaN	NaN	9.2688E-05	1	34039	63.947	59.788	1	262610			10745	450	9045	9282	10745	10745		
KPVTDCVISVPSFFTDAER	19	Unmodified	_KPVTDCVISVPSFFTDAER_			0	0	1	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.361261	2167.06195	0.37164	0.00026883	-0.7598	-0.00054961	-0.38816	-0.00028078	723.695261186738	15.349	0.23053	15.349	15.225	15.455	0	615	82	0.912521036363781	0.0548259126734941	0.912521036363781	551.721253739038	0	33.1484098143558						1255	27	5	NaN	NaN	NaN	0.0013219	1	34268	45.17	45.09	1	370610			10746	2415	9046	9283	10746	10746		
KPVTVSPTTPTSPTEGEAS	19	Unmodified	_KPVTVSPTTPTSPTEGEAS_			0	0	1	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.473103	1884.93165	3.0526	0.0028801	-2.8732	-0.0027108	0.17946	0.00016932	943.470359767016	5.9573	0.14193	5.9573	5.8864	6.0283	0	294	58	1.12800004657306	0.0379835677667413	1.12800004657306	455.102844474027	0	15.324848422155						682	17	4	NaN	NaN	NaN	1.0575E-09	1	29264	87.727	85.744	1	167520			10747	3465	9047	9284	10747	10747		
KPVVDCVVSVPCFYTDAER	19	Unmodified	_KPVVDCVVSVPCFYTDAER_			0	0	1	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.694135	2240.06057	-0.79357	-0.00059334	-0.35327	-0.00026414	-1.1468	-0.00085749	748.028359448638	13.061	0.088658	13.061	13.008	13.096	0	669	28	0.875957769340875	0.0183032026669903	0.875957769340875	529.5048182002	0	11.0640425142399						161	11	3	NaN	NaN	NaN	0.0024109	1	35095	31.767	29.92	1	32800			10748	955	9048	9285	10748	10748		
KPVVDCVVSVPCFYTDAER	19	Unmodified	_KPVVDCVVSVPCFYTDAER_			0	0	1	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.694135	2240.06057	0.29518	0.00022071	-0.6329	-0.00047322	-0.33772	-0.00025251	748.02799356223	13.052	0.17733	13.052	12.981	13.159	1.7764E-15	609	58	0.916577990479294	0.0385384095033867	0.916577990479294	554.059202439889	0	23.2959558865062						1024	21	6	NaN	NaN	NaN	0.0011681	1	35096	51.577	46.98	1	370310			10749	955	9048	9285	10749	10749		
KPYPDDENLVEVK	13	Unmodified	_KPYPDDENLVEVK_			0	0	1	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.393396	1544.77224	2.3344	0.0018054	-2.4566	-0.0018999	-0.12223	-9.4528E-05	773.391648275316	7.0037	0.28381	7.0037	6.8885	7.1723	0	390	70	1.06389100039157	0.0462023803621898	1.06389100039157	429.927297541215	0	18.6707703343451						1146	33	4	NaN	NaN	NaN	0.027785	1	19884	47.57	28.247	1	288490			10750	1277	9049	9286	10750	10750		
KQDFDEDDILK	11	Unmodified	_KQDFDEDDILK_			0	0	1	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.330264	1364.64598	1.9494	0.0013321	1.0235	0.00069939	2.9729	0.0020315	683.331000235714	7.864	0.21283	7.864	7.7664	7.9793	0	483	52	1.00151498427745	0.0342913380961678	1.00151498427745	405.194775116126	0	13.8736526626529						556	25	3	NaN	NaN	NaN	0.00022093	1	14324	99.276	79.093	1	223270			10751	288	9050	9287	10751	10751		
KQEDFMTTMDANEEK	15	Unmodified	_KQEDFMTTMDANEEK_			0	0	1	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.890034	1815.76551	2.2613	0.0020553	-1.6457	-0.0014958	0.61559	0.0005595	908.888558134258	7.0925	0.12421	7.0925	7.0392	7.1634	0	336	37	1.09998710857178	0.024034244886211	1.09998710857178	443.924238956113	0	9.69955355554043						281	15	4	NaN	NaN	NaN	0.02378	1	27613	35.246	32.767	1	56204			10752	1511	9051	9288	10752	10752		
KQELEEICHDLEAR	14	Unmodified	_KQELEEICHDLEAR_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.427975	1768.8414	2.5386	0.0022478	-1.583	-0.0014017	0.95557	0.00084608	885.426959523205	8.7511	0.097633	8.7511	8.7068	8.8044	0	321	49	1.10999792833052	0.0320236055911389	1.10999792833052	448.054394566706	0	12.9264360308862						292	12	3	NaN	NaN	NaN	0.023345	1	26378	30.875	27.37	1	61909			10753	972	9052	9289	10753	10753		
KQELEEICHDLEAR	14	Unmodified	_KQELEEICHDLEAR_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.621076	1768.8414	0.64345	0.00038004	0.36797	0.00021733	1.0114	0.00059737	590.621554354783	8.7422	0.23073	8.7422	8.6891	8.9198	0	669	43	0.875957769340875	0.0284775811147984	0.875957769340875	530.372590907943	0	17.2425304133232						810	27	6	NaN	NaN	NaN	2.5865E-17	1	26379	256.93	231.32	1	542940			10754	972	9052	9289	10754	10754		
KQPALDVLYDVMK	13	Unmodified	_KQPALDVLYDVMK_			0	0	1	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.27781	1518.8116	-1.4069	-0.0007137	-0.91311	-0.0004632	-2.32	-0.0011769	507.277825003473	14.639	0.17735	14.639	14.533	14.71	0	741	28	0.827064408645228	0.0183617725733707	0.827064408645228	501.408623062992	0	11.1318429456912						211	21	3	NaN	NaN	NaN	0.038956	1	19102	57.293	56.969	1	39150			10755	1728	9053	9290	10755	10755		
KSDIDEIVLVGGSTR	15	Unmodified	_KSDIDEIVLVGGSTR_			0	0	1	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.930677	1587.8468	1.9683	0.0015647	-0.71213	-0.0005661	1.2562	0.00099857	794.930214484588	10.33	0.16847	10.33	10.241	10.41	0	387	43	1.06589869032374	0.028105727549725	1.06589869032374	430.634805419721	0	11.3550233473686						514	20	4	NaN	NaN	NaN	9.8389E-06	1	21211	120.21	106.41	1	207420			10756	638	9054	9291	10756	10756		
KSDVEAIFSK	10	Unmodified	_KSDVEAIFSK_			0	0	1	P07910;O60812;B7ZW38;B2RXH8;P0DMR1	P07910	P07910	HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.303321	1122.59209	1.4589	0.00082034	-0.30118	-0.00016935	1.1577	0.00065098	562.303892387968	6.9949	0.22174	6.9949	6.9328	7.1545	0	600	46	0.922661313351899	0.0304166222504839	0.922661313351899	374.098053413158	0	12.3325851107509						485	26	3	NaN	NaN	NaN	0.014343	1	7341	84.309	46.587	1	445710			10757	568	9055	9292	10757	10757		
KSDVETIFSK	10	Unmodified	_KSDVETIFSK_			0	0	1	Q9UKM9	Q9UKM9	Q9UKM9	RALY	RNA-binding protein Raly	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.308603	1152.60265	0.57297	0.00033078	0.0057603	3.3254E-06	0.57873	0.00033411	577.308227785945	6.6402	0.11527	6.6402	6.5959	6.7111	0	621	31	0.908462957275599	0.020293211090572	0.908462957275599	368.224890976688	0	8.2253936514947						215	14	2	NaN	NaN	NaN	0.022297	1	8135	75.474	37.883	1	84501			10758	3266	9056	9293	10758	10758		
KSEIEYYAMLAK	12	Unmodified	_KSEIEYYAMLAK_			0	0	1	P62888	P62888	P62888	RPL30	60S ribosomal protein L30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.370878	1444.7272	1.4079	0.0010184	1.4247	0.0010306	2.8327	0.0020491	723.371408111828	10.25	0.070942	10.25	10.223	10.294	0	369	25	1.07793901817685	0.0160471329064824	1.07793901817685	435.872043002525	0	6.48876836846631						129	9	3	NaN	NaN	NaN	0.03729	1	16820	60	57.329	1	27135			10759	1411	9057	9294	10759	10759		
KTEELEEESFPER	13	Unmodified	_KTEELEEESFPER_			0	0	1	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.880849	1621.74715	3.0555	0.0024807	-4.4526	-0.003615	-1.3971	-0.0011343	811.879342210198	6.1347	0.19509	6.1347	6.0195	6.2146	0	417	55	1.04580932352505	0.0361708486763277	1.04580932352505	422.442117270743	0	14.6107799525097						657	23	5	NaN	NaN	NaN	0.022938	1	22236	47.57	37.549	1	113350			10760	3355	9058	9295	10760	10760		
KTEPATGFIDGDLIESFLDISRPK	24	Unmodified	_KTEPATGFIDGDLIESFLDISRPK_			0	0	2	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.797192	2648.36975	1.8497	0.0016347	-0.84129	-0.00074353	1.0084	0.00089121	884.130868857363	19.534	0.12414	19.534	19.463	19.587	0	309	55	1.11800162319566	0.0360067249718126	1.11800162319566	675.174937545893	0	21.7449042825057						641	15	7	NaN	NaN	NaN	0.019102	1	37428	15.955	14.704	1	171390			10761	1884	9059	9296	10761	10761		
KTEPATGFIDGDLIESFLDISRPK	24	Unmodified	_KTEPATGFIDGDLIESFLDISRPK_			0	0	2	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	663.099713	2648.36975	-0.079983	-5.3037E-05	2.8771	0.0019078	2.7971	0.0018547	663.352688760893	19.543	0.1064	19.543	19.472	19.579	0	573	25	0.940896116921038	0.016203101643964	0.940896116921038	757.623471865508	0	13.0469771335232						157	13	4	NaN	NaN	NaN	0.0051729	1	37429	49.872	45.714	1	26031			10762	1884	9059	9296	10762	10762		
KTEVLMENFR	10	Unmodified	_KTEVLMENFR_			0	0	1	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.82918	1265.64381	1.7059	0.0010813	-0.96578	-0.00061214	0.74017	0.00046914	633.828202628564	7.2698	0.20393	7.2698	7.19	7.394	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.706883656613	0	7.3597851849031						265	24	3	NaN	NaN	NaN	0.024687	1	11383	81.335	52.026	1	69173			10763	3331	9060	9297	10763	10763		
KVDEAIALFQK	11	Unmodified	_KVDEAIALFQK_			0	0	1	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.36117	1260.70779	1.4342	0.00090548	-0.23983	-0.00015142	1.1943	0.00075406	631.360964044447	9.576	0.15959	9.576	9.5317	9.6913	0	534	31	0.967195187796614	0.0202146590130609	0.967195187796614	391.632962762204	0	8.18524213147504						324	19	3	NaN	NaN	NaN	0.0030444	1	11249	92.445	76.863	1	194430			10764	858	9061	9298	10764	10764		
KVDIIADAAYSIFQK	15	Unmodified	_KVDIIADAAYSIFQK_			0	0	1	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.461613	1680.90867	1.6609	0.0013976	-0.097182	-8.1775E-05	1.5637	0.0013158	841.46114499645	15.81	0.13303	15.81	15.766	15.899	0	309	34	1.11800162319566	0.0220086485817799	1.11800162319566	451.468670684369	0	8.88747843708336						318	16	4	NaN	NaN	NaN	0.00096405	1	23947	59.997	56.912	1	76778			10765	2097	9062	9299	10765	10765		
KVDVDEYDENK	11	Unmodified	_KVDVDEYDENK_			0	0	1	O15511	O15511	O15511	ARPC5	Actin-related protein 2/3 complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.312071	1352.60959	2.2744	0.0015405	-2.2026	-0.0014919	0.071798	4.863E-05	677.310838284036	3.581	0.31919	3.581	3.5012	3.8204	0	555	43	0.953040030838688	0.0283279591633129	0.953040030838688	385.617108176436	0	11.4620009019808						521	37	4	NaN	NaN	NaN	0.0064269	1	13951	83.775	66.305	1	127330			10766	179	9063	9300	10766	10766		
KVDWLTEK	8	Unmodified	_KVDWLTEK_			0	0	1	P38919;P60842;Q14240	P38919;P60842;Q14240	P60842	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.782025	1017.5495	1.0284	0.00052428	-0.089065	-4.5404E-05	0.93938	0.00047888	509.782158802838	6.0283	0.14189	6.0283	5.9751	6.117	0	708	40	0.849494101904619	0.0264894101708458	0.849494101904619	344.862963829641	0	10.7537138646816						437	17	3	NaN	NaN	NaN	0.0088807	1	4686	105.36	49.344	1	642660			10767	1311;1008;1739	9064	9301	10767	10767		
KVEAQLQELQVK	12	Unmodified	_KVEAQLQELQVK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.909016	1411.80348	1.6754	0.0011843	-0.94402	-0.00066734	0.73134	0.00051699	706.908147947799	7.0303	0.097627	7.0303	6.9949	7.0925	0	450	37	1.02367897599655	0.0241638758474618	1.02367897599655	414.023172016447	0	9.77299012792417						263	12	4	NaN	NaN	NaN	1.2657E-06	1	15825	84.309	70.511	1	99257			10768	972	9065	9302	10768	10768		
KVEDLFLTFAK	11	Unmodified	_KVEDLFLTFAK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.871371	1309.72819	1.3166	0.0008635	-0.4954	-0.00032492	0.82117	0.00053858	655.871184901027	14.302	0.15072	14.302	14.258	14.409	0	483	34	1.00151498427745	0.0221823754430851	1.00151498427745	405.365114879153	0	8.97835909690963						414	18	4	NaN	NaN	NaN	2.6841E-05	1	12654	129.69	117.09	1	188750			10769	1703	9066	9303	10769	10769		
KVEEAEPEEFVVEK	14	Unmodified	_KVEEAEPEEFVVEK_			0	0	1	Q13185	Q13185	Q13185	CBX3	Chromobox protein homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.613804	1660.81958	0.39899	0.00022129	0.73934	0.00041005	1.1383	0.00063134	554.614154950785	7.4472	0.15075	7.4472	7.4028	7.5536	-8.8818E-16	699	82	0.85560534332665	0.055016504445382	0.85560534332665	518.311326455404	0	33.3280730636332						943	18	5	NaN	NaN	NaN	0.00010515	1	23367	140.57	114.96	1	369040			10770	1639	9067	9304	10770	10770		
KVEEAEPEEFVVEK	14	Unmodified	_KVEEAEPEEFVVEK_			0	0	1	Q13185	Q13185	Q13185	CBX3	Chromobox protein homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.417068	1660.81958	3.5233	0.0029294	-0.753	-0.00062606	2.7703	0.0023033	831.416375766409	7.4383	0.35465	7.4383	7.3319	7.6865	0	363	103	1.08195024817156	0.0681534221810303	1.08195024817156	436.95370530604	0	27.5242696247952						1732	41	5	NaN	NaN	NaN	8.312E-11	1	23369	135.24	112.28	1	1179700			10771	1639	9067	9304	10771	10771		
KVEEEEDESALK	12	Unmodified	_KVEEEEDESALK_			0	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.338286	1404.66202	2.87	0.0020186	-1.3771	-0.00096856	1.4929	0.00105	703.337723632107	3.0311	0.23944	3.0311	2.9956	3.2351	0	516	37	0.979317271586824	0.024237464198638	0.979317271586824	396.100780435711	0	9.80323615584467						440	28	4	NaN	NaN	NaN	1.237E-05	1	15603	104.04	88.894	1	108740			10772	1757	9068	9305	10772	10772		
KVEELEGEITTLNHK	15	Unmodified	_KVEELEGEITTLNHK_			0	0	1	Q10589	Q10589	Q10589	BST2	Bone marrow stromal antigen 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.643986	1738.91013	0.66106	0.00038384	0.32775	0.0001903	0.98881	0.00057415	580.644030880329	7.6334	0.1508	7.6334	7.5801	7.7309	-8.8818E-16	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	536.599383771675	0	12.3074858692635						385	18	4	NaN	NaN	NaN	3.3681E-08	1	25573	165.09	164.04	1	153220			10773	1589	9069	9306	10773	10773		
KVEELEGEITTLNHK	15	Unmodified	_KVEELEGEITTLNHK_			0	0	1	Q10589	Q10589	Q10589	BST2	Bone marrow stromal antigen 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.462341	1738.91013	2.3616	0.0020557	-0.39189	-0.00034113	1.9697	0.0017146	870.462001580353	7.6334	0.05319	7.6334	7.6068	7.66	0	249	37	1.15795408347545	0.0239418187322806	1.15795408347545	467.474621452107	0	9.66548916616449						182	7	3	NaN	NaN	NaN	0.00052536	1	25574	87.573	79.572	1	35509			10774	1589	9069	9306	10774	10774		
KVEELQACVETAR	13	Unmodified	_KVEELQACVETAR_			0	0	1	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.890497	1531.76644	2.0883	0.0016015	-1.2235	-0.00093826	0.86488	0.00066327	766.889182547496	5.4164	0.062085	5.4164	5.3987	5.4608	0	363	25	1.08195024817156	0.0160427097946323	1.08195024817156	437.258160726822	0	6.48348275692877						132	8	3	NaN	NaN	NaN	4.0465E-05	1	19491	80.623	59.535	1	26694			10775	1782	9070	9307	10775	10775		
KVEEVLEEEEEEYVVEK	17	Unmodified	_KVEEVLEEEEEEYVVEK_			0	0	1	P83916	P83916	P83916	CBX1	Chromobox protein homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.675569	2108.00488	1.4708	0.001035	0.93413	0.00065733	2.4049	0.0016923	704.010595694199	11.101	0.13301	11.101	11.057	11.19	0	543	46	0.961130371139249	0.0303408835335462	0.961130371139249	581.214621796597	0	18.3477347896333						476	16	5	NaN	NaN	NaN	7.5561E-05	1	33438	111.38	101.36	1	144090			10776	1482	9071	9308	10776	10776		
KVEINPPDDMEWK	13	Unmodified	_KVEINPPDDMEWK_			0	0	1	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.260708	1599.76029	-0.82934	-0.00044309	-0.93422	-0.00049912	-1.7636	-0.0009422	534.259715405021	9.7977	0.1596	9.7977	9.7534	9.913	0	837	13	0.761618911097395	0.00820006867223988	0.761618911097395	461.521424215836	0	4.96903020281735						100	19	2	NaN	NaN	NaN	0.046688	1	21569	27.378	26.121	1	22855			10777	3359	9072	9309	10777	10777		
KVEQLQQEYTEMK	13	Unmodified	_KVEQLQQEYTEMK_			0	0	1	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.411262	1652.80797	3.6874	0.003051	-3.6356	-0.0030081	0.051833	4.2887E-05	827.408287085969	6.0727	0.097542	6.0727	6.0461	6.1436	0	342	46	1.09598084995137	0.0300531569340965	1.09598084995137	442.637830450122	0	12.1376793983908						356	12	4	NaN	NaN	NaN	0.00017302	1	23133	75.5	61.702	1	97889			10778	1745	9073	9310	10778	10778		
KVESLQEEIAFLK	13	Unmodified	_KVESLQEEIAFLK_			0	0	1	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.955613	1532.84501	-1.2836	-0.00065715	0.05802	2.9703E-05	-1.2256	-0.00062745	511.955735009799	13.07	0.21281	13.07	13.008	13.221	0	765	49	0.810730346695089	0.0326817653854051	0.810730346695089	491.465488850019	0	19.8117165184402						641	25	5	NaN	NaN	NaN	4.1643E-06	1	19526	112.93	102.14	1	533310			10779	588	9074	9311	10779	10779		
KVESLQEEIAFLK	13	Unmodified	_KVESLQEEIAFLK_			0	0	1	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.429781	1532.84501	2.1276	0.0016328	1.3363	0.0010255	3.4639	0.0026583	767.430897103448	13.061	0.36361	13.061	12.999	13.363	0	372	61	1.07593298845566	0.0401289106363909	1.07593298845566	434.823601787781	0	16.2175503920378						1338	42	5	NaN	NaN	NaN	2.2863E-16	1	19528	201.66	167.94	1	2432400			10780	588	9074	9311	10780	10780		
KVETDHIVAAVGLEPNVELAK	21	Unmodified	_KVETDHIVAAVGLEPNVELAK_			0	0	1	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.745992	2231.21615	0.43595	0.00032468	0.64703	0.00048187	1.083	0.00080655	745.080576741133	11.571	0.062111	11.571	11.536	11.598	0	561	70	0.948993180460448	0.0465033917347906	0.948993180460448	573.667754109388	0	28.111367757166						352	8	4	NaN	NaN	NaN	0.0016415	1	35000	50.131	49.256	1	68843			10781	458	9075	9312	10781	10781		
KVETDHIVAAVGLEPNVELAK	21	Unmodified	_KVETDHIVAAVGLEPNVELAK_			0	0	1	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	558.811313	2231.21615	0.44018	0.00024598	3.2847	0.0018355	3.7249	0.0020815	559.315136729268	11.571	0.097607	11.571	11.545	11.642	0	576	82	0.938871150116794	0.05474995317825	0.938871150116794	756.729839073666	0	44.1284443053917						319	12	4	NaN	NaN	NaN	0.0017383	1	35001	58.794	55.353	1	82723			10782	458	9075	9312	10782	10782		
KWDLSELPK	9	Unmodified	_KWDLSELPK_			0	0	1	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.308406	1114.60226	0.98179	0.00054814	1.2422	0.00069355	2.224	0.0012417	558.309222603041	9.9839	0.097507	9.9839	9.9307	10.028	0	567	37	0.944945209309785	0.0242945584092671	0.944945209309785	383.166486149073	0	9.85121728382722						211	12	3	NaN	NaN	NaN	0.00061976	1	7122	119.07	87.115	1	51934			10783	2435	9076	9313	10783	10783		
KWDTCAPEVILHAVGGK	17	Unmodified	_KWDTCAPEVILHAVGGK_			0	0	1	O95861	O95861	O95861	BPNT1	3(2),5-bisphosphate nucleotidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.661094	1879.96145	0.07967	5.0006E-05	-0.55627	-0.00034915	-0.4766	-0.00029914	627.99518072811	13.15	0.15074	13.15	13.07	13.221	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	546.115888794722	0	9.82923618536324						340	18	4	NaN	NaN	NaN	9.6301E-06	1	29155	63.79	59.544	1	107430			10784	459	9077	9314	10784	10784		
KYDAFLASESLIK	13	Unmodified	_KYDAFLASESLIK_			0	0	1	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.903399	1483.79225	1.0427	0.00077462	2.7159	0.0020176	3.7586	0.0027922	742.905138085737	11.979	0.25718	11.979	11.917	12.174	-1.7764E-15	420	55	1.04379886199097	0.0361858246299764	1.04379886199097	421.961822540227	0	14.6283322074727						985	30	6	NaN	NaN	NaN	1.9926E-10	1	18033	178.52	149.88	1	1522800			10785	1413	9078	9315	10785	10785		
KYDDDISPSEDK	12	Unmodified	_KYDDDISPSEDK_			0	0	1	Q07866	Q07866	Q07866	KLC1	Kinesin light chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.314811	1410.61507	2.0986	0.0014823	2.9906	0.0021123	5.0892	0.0035946	706.317005765486	3.4124	0.1065	3.4124	3.3769	3.4834	4.4409E-16	519	22	0.97729762293174	0.014137541397	0.97729762293174	395.267620680542	0	5.71792278947873						96	13	2	NaN	NaN	NaN	0.034193	1	15763	56.938	53.835	1	23083			10786	1571	9079	9316	10786	10786		
KYDTVLDILR	10	Unmodified	_KYDTVLDILR_			0	0	1	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.353345	1234.69214	0.90639	0.00056047	-2.2293	-0.0013785	-1.3229	-0.00081804	618.353004586498	13.363	0.23058	13.363	13.292	13.522	0	546	43	0.959108205975751	0.0283201170105575	0.959108205975751	388.447065761577	0	11.4698907654364						523	27	4	NaN	NaN	NaN	0.00012683	1	10474	127.93	85.854	1	172390			10787	652	9080	9317	10787	10787		
KYDVDTLDMVFLDHWK	16	Unmodified	_KYDVDTLDMVFLDHWK_			0	0	1	P21964	P21964	P21964	COMT	Catechol O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.664393	2023.97135	0.14282	9.6496E-05	-1.2064	-0.0008151	-1.0636	-0.00071861	675.99785683462	16.466	0.133	16.466	16.386	16.519	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	580.149214007006	0	9.78608085912629						258	16	5	NaN	NaN	NaN	0.00017156	1	32041	89.359	85.053	1	73966			10788	797	9081	9318	10788	10788		
KYEDICPSTHNMDVPNIK	18	Unmodified	_KYEDICPSTHNMDVPNIK_			0	0	1	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.00626	2159.99797	2.2979	0.002484	-1.4979	-0.0016193	0.79998	0.00086478	1081.5064927159	8.1745	0.15087	8.1745	8.1036	8.2544	0	135	91	1.23356193185193	0.0595921534555002	1.23356193185193	497.229471417046	0	24.0206626016718						1283	18	5	NaN	NaN	NaN	2.3278E-06	1	34171	97.268	91.926	1	407550			10789	1434	9082	9319	10789	10789		
KYEDICPSTHNMDVPNIK	18	Unmodified	_KYEDICPSTHNMDVPNIK_			0	0	1	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	541.00677	2159.99797	0.92346	0.0004996	0.83222	0.00045024	1.7557	0.00094984	541.258051574529	8.1833	0.15966	8.1833	8.1036	8.2632	0	678	133	0.869855008346864	0.0893646515571075	0.869855008346864	701.245641938506	0	72.04254944381						1060	19	5	NaN	NaN	NaN	0.027734	1	34172	57.279	48.526	1	250720			10790	1434	9082	9319	10790	10790		
KYEDICPSTHNMDVPNIK	18	Unmodified	_KYEDICPSTHNMDVPNIK_			0	0	1	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.006601	2159.99797	2.2231	0.0016028	-0.13788	-9.9416E-05	2.0852	0.0015034	721.341273037551	8.1745	0.30152	8.1745	8.077	8.3785	0	534	160	0.967195187796614	0.107383083521378	0.967195187796614	584.790073821732	0	64.9264617235433						3472	35	7	NaN	NaN	NaN	2.2957E-45	1	34173	311.58	292.39	1	2758800			10791	1434	9082	9319	10791	10791		
KYEDICPSTHNMDVPNIK	18	Oxidation (M)	_KYEDICPSTHNM(Oxidation (M))DVPNIK_	KYEDICPSTHNM(1)DVPNIK	KYEDICPSTHNM(55)DVPNIK	0	1	1	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.338239	2175.99289	1.6012	0.001163	0.24209	0.00017584	1.8433	0.0013389	726.672808662129	6.3831	0.13299	6.3831	6.3299	6.4629	0	573	85	0.940896116921038	0.056726618392489	0.940896116921038	568.862309316492	0	34.2967034916298						1093	16	5	NaN	NaN	NaN	0.00046036	1	34391	54.912	53.641	1	342590			10792	1434	9082	9320	10792	10792	512	
KYEEIDNAPEER	12	Unmodified	_KYEEIDNAPEER_			0	0	1	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.849352	1491.68415	3.1811	0.0023758	-3.2986	-0.0024636	-0.11749	-8.7747E-05	746.846359308808	3.7938	0.20392	3.7938	3.7583	3.9622	0	480	73	1.00353128488872	0.0483812177917015	1.00353128488872	405.663607886598	0	19.5574364834129						533	24	4	NaN	NaN	NaN	0.0022811	1	18281	62.705	58.177	1	155160			10793	1131	9083	9321	10793	10793		
KYEEIDNAPEER	12	Unmodified	_KYEEIDNAPEER_			0	0	1	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.235327	1491.68415	0.45953	0.00022895	0.91669	0.00045673	1.3762	0.00068568	498.235712868336	3.7938	0.19506	3.7938	3.7494	3.9445	0	810	34	0.78005493425781	0.0225172323849473	0.78005493425781	472.98663521285	0	13.653333261965						393	23	4	NaN	NaN	NaN	5.6105E-06	1	18283	145.75	112.32	1	140630			10794	1131	9083	9321	10794	10794		
KYEFGESDLR	10	Unmodified	_KYEFGESDLR_			0	0	1	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.30131	1242.58807	2.2945	0.0014279	0.48079	0.0002992	2.7753	0.0017271	622.301744466715	6.0993	0.15961	6.0993	6.055	6.2146	0	525	31	0.973257487423603	0.020206269780618	0.973257487423603	394.14993826327	0	8.18313764802838						252	19	2	NaN	NaN	NaN	0.038072	1	10697	65.933	29.722	1	129410			10795	1737	9084	9322	10795	10795		
KYEQGFITDPVVLSPK	16	Unmodified	_KYEQGFITDPVVLSPK_			0	0	1	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.66461	1819.972	-0.31734	-0.00019284	0.52954	0.00032178	0.2122	0.00012895	607.999102056017	11.722	0.14187	11.722	11.651	11.793	0	642	52	0.894250814548268	0.0345152137235557	0.894250814548268	541.330421402713	0	20.8936183068678						285	17	4	NaN	NaN	NaN	0.0014459	1	27731	80.815	75.721	1	89913			10796	666	9085	9323	10796	10796		
KYEQGFITDPVVLSPK	16	Unmodified	_KYEQGFITDPVVLSPK_			0	0	1	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.993277	1819.972	1.3715	0.0012494	1.9824	0.001806	3.3539	0.0030554	910.994953064222	11.74	0.15961	11.74	11.651	11.811	0	213	103	1.18187287897418	0.0676398181799582	1.18187287897418	476.962691487255	0	27.2970725572645						1084	19	3	NaN	NaN	NaN	1.1183E-05	1	27732	105.78	98.573	1	317250			10797	666	9085	9323	10797	10797		
KYETVIMPVFGIATPFHIATIK	22	Unmodified	_KYETVIMPVFGIATPFHIATIK_			0	0	1	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	619.84727	2475.35997	-0.029182	-1.8089E-05	-1.2281	-0.00076125	-1.2573	-0.00077934	620.347033554944	18.089	0.09752	18.089	18.045	18.142	0	573	19	0.940896116921038	0.0121489600135238	0.940896116921038	757.899695310431	0	9.78608894966999						133	12	4	NaN	NaN	NaN	0.0096499	1	36708	31.905	27.747	1	25352			10798	3430	9086	9324	10798	10798		
KYETVIMPVFGIATPFHIATIK	22	Unmodified	_KYETVIMPVFGIATPFHIATIK_			0	0	1	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	826.127268	2475.35997	1.5021	0.0012409	1.2961	0.0010708	2.7982	0.0023117	826.463137018775	18.08	0.088664	18.08	18.045	18.133	0	342	31	1.09598084995137	0.0200340549752125	1.09598084995137	662.117802994711	0	12.1032264987583						196	11	4	NaN	NaN	NaN	0.0094203	1	36709	39.48	35.721	1	36431			10799	3430	9086	9324	10799	10799		
KYPYWPHQPIENL	13	Unmodified	_KYPYWPHQPIENL_			0	0	1	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.287586	1683.84093	-1.917	-0.0010779	-0.61389	-0.00034518	-2.5309	-0.0014231	562.621624358797	11.58	0.18626	11.58	11.509	11.695	0	807	52	0.782101955086014	0.0348187576890427	0.782101955086014	473.730681508211	0	21.0902347220005						345	22	3	NaN	NaN	NaN	0.06147	1	24011	16.288	9.5406	1	67130			10800	372	9087	9325	10800	10800		
LAAAILGGVDQIHIK	15	Unmodified	_LAAAILGGVDQIHIK_			0	0	0	P22087;A6NHQ2	P22087;A6NHQ2	P22087	FBL;FBLL1	rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.971597	1517.89296	0.017032	8.6347E-06	-0.29822	-0.00015119	-0.28118	-0.00014255	506.971434629515	13.159	0.15962	13.159	13.114	13.274	0	651	40	0.888155670855968	0.0264196242559493	0.888155670855968	538.448197935052	0	16.0170109109667						511	19	5	NaN	NaN	NaN	0.018458	1	19073	66.664	60.401	1	311550			10801	800;15	9088	9326	10801	10801		
LAAAILGGVDQIHIK	15	Unmodified	_LAAAILGGVDQIHIK_			0	0	0	P22087;A6NHQ2	P22087;A6NHQ2	P22087	FBL;FBLL1	rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.953758	1517.89296	1.986	0.0015093	1.5303	0.0011629	3.5163	0.0026722	759.955050337972	13.159	0.15962	13.159	13.114	13.274	0	285	46	1.13399579921816	0.0299787708874888	1.13399579921816	458.329294982379	0	12.1165783283978						594	19	5	NaN	NaN	NaN	7.9075E-12	1	19074	175.54	162.36	1	461540			10802	800;15	9088	9326	10802	10802		
LAACVNLIPQITSIYEWK	18	Unmodified	_LAACVNLIPQITSIYEWK_			0	0	0	O60888	O60888	O60888	CUTA	Protein CutA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.06645	2118.11835	0.73352	0.00077758	0.22474	0.00023824	0.95826	0.0010158	1060.56820874417	19.596	0.10642	19.596	19.534	19.641	0	171	79	1.20972836110953	0.0516323532259755	1.20972836110953	487.684127666009	0	20.8148208737194						696	13	4	NaN	NaN	NaN	1.32E-06	1	33597	70.806	61.228	1	132210			10803	293	9089	9327	10803	10803		
LAADDFR	7	Unmodified	_LAADDFR_			0	0	0	CON__P05784;Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2;CON__P19012;P19012;CON__P08779;CON__A2A4G1;P08779;CON__ENSEMBL:ENSP00000377550;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08730-1;P13646;CON__Q15323;O76014;P13645;CON__A2AB72;CON__P13645;CON__O76015;CON__Q14525;CON__Q148H6;CON__O76013;Q15323;CON__O76014;Q2M2I5;CON__A2A5Y0;Q7Z3Y7;CON__REFSEQ:XP_986630;CON__Q7Z3Y7;CON__Q2M2I5;CON__P02535-1;CON__Q9UE12;Q14532;Q14525;O76013;O76015;CON__Q14532;P05783;Q92764;CON__Q92764;CON__Q497I4	CON__P05784;Q04695;P05783	P05783	KRT17;KRT14;KRT15;KRT16;KRT13;KRT37;KRT10;KRT31;KRT24;KRT28;KRT32;KRT33B;KRT36;KRT38;KRT18;KRT35	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13;Keratin, type I cuticular Ha7;Keratin, type I cytoskeletal 10;Keratin, type I cuticular Ha1;Keratin, type I cytoskeletal 24;Keratin, type I cytoskeletal 28;Keratin, type I cuticular Ha2;Keratin, type I cuticular Ha3-II;Keratin, type I cuticular Ha6;Keratin, type I cuticular Ha8;Keratin, type I cytoskeletal 18;Keratin, type I cuticular Ha5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	404.20341	806.392267	-1.8767	-0.00075856	2.1025	0.00084985	0.22585	9.129E-05	404.204314343267	5.443	0.23938	5.443	5.3898	5.6292	0	804	52	0.78414869089473	0.0347993662256366	0.78414869089473	319.444972723442	0	14.1764983144427						493	28	4	NaN	NaN	NaN	0.013723	1	1043	69.093	35.28	1	292940		+	10804	536;36;27	9090	9328	10804	10804		
LAAEATEWQR	10	Unmodified	_LAAEATEWQR_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.796195	1173.57784	0.74488	0.00043784	2.3587	0.0013864	3.1036	0.0018243	587.797600902109	6.3476	0.14187	6.3476	6.2944	6.4363	-8.8818E-16	630	28	0.902373728295776	0.0182727556379993	0.902373728295776	365.679450852746	0	7.40488229847915						209	17	3	NaN	NaN	NaN	0.0031188	1	8695	74.269	51.882	1	50141			10805	2621	9091	9329	10805	10805		
LAAEEQQK	8	Unmodified	_LAAEEQQK_			0	0	0	Q14123	Q14123	Q14123	PDE1C	Calcium/calmodulin-dependent 3,5-cyclic nucleotide phosphodiesterase 1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.740357	915.46616	0.045167	2.072E-05	4.1181	0.0018891	4.1633	0.0019099	458.742581295123	4.2549	0.16846	4.2549	4.1751	4.3435	0	744	49	0.82502364452135	0.0326681314822594	0.82502364452135	335.42674342309	0	13.2817586860422						257	20	2	NaN	NaN	NaN	0.032625	1	2605	32.128	6.8739	1	101910			10806	1721	9092	9330	10806	10806		
LAAEQELIR	9	Unmodified	_LAAEQELIR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.798206	1041.58186	0.72658	0.00037913	-1.5801	-0.0008245	-0.85353	-0.00044537	521.797387825086	7.4028	0.16852	7.4028	7.3585	7.527	0	702	61	0.853568545818287	0.0407218276109629	0.853568545818287	346.410333055641	0	16.5264546525958						476	20	4	NaN	NaN	NaN	8.3657E-05	1	5263	121.67	99.285	1	189410			10807	1816	9093	9331	10807	10807		
LAAFGQLHK	9	Unmodified	_LAAFGQLHK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.784902	983.55525	1.14	0.00056177	0.6014	0.00029636	1.7414	0.00085813	492.785198127182	5.7534	0.33699	5.7534	5.7002	6.0372	0	672	46	0.873923798053065	0.0305138129080004	0.873923798053065	354.944086074771	0	12.393182860354						630	39	4	NaN	NaN	NaN	0.004599	1	3918	81.32	59.392	1	352710			10808	1606	9094	9332	10808	10808		
LAAIIPDPVVAPSIVPVLK	19	Unmodified	_LAAIIPDPVVAPSIVPVLK_			0	0	0	Q12996	Q12996	Q12996	CSTF3	Cleavage stimulation factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.597712	1911.18087	0.75346	0.00072076	0.10972	0.00010496	0.86318	0.00082572	957.099273585706	19.197	0.070933	19.197	19.171	19.242	0	177	55	1.2057522832638	0.0358043651273887	1.2057522832638	486.4239257605	0	14.4441773707314						399	9	4	NaN	NaN	NaN	0.0022855	1	29857	33.526	29.28	1	128290			10809	1617	9095	9333	10809	10809		
LAALADQWQFLVQK	14	Unmodified	_LAALADQWQFLVQK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.951215	1629.88788	1.1677	0.00095282	0.79775	0.00065093	1.9655	0.0016037	815.95194765999	16.794	0.12411	16.794	16.732	16.856	0	348	49	1.09197348738011	0.0320589101536728	1.09197348738011	441.070898182992	0	12.9492633838336						504	15	4	NaN	NaN	NaN	1.181E-07	1	22490	134.2	121.02	1	234210			10810	1703	9096	9334	10810	10810		
LAALNPESNTAGLDIFAK	18	Unmodified	_LAALNPESNTAGLDIFAK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.991266	1843.96798	2.6995	0.0024917	0.26446	0.0002441	2.964	0.0027357	923.493116968725	15.491	0.39027	15.491	15.393	15.783	0	243	70	1.16194328902838	0.0458727394950837	1.16194328902838	468.873657415431	0	18.5108166171438						1754	45	6	NaN	NaN	NaN	1.4838E-45	1	28334	218.79	188.44	1	2651600			10811	71	9097	9335	10811	10811		
LAALPENPPAIDWAYYK	17	Unmodified	_LAALPENPPAIDWAYYK_			0	0	0	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.498726	1930.9829	2.1722	0.0020994	2.4902	0.0024068	4.6624	0.0045063	967.001125985747	15.819	0.43451	15.819	15.544	15.978	0	198	139	1.1918274123006	0.0916133826149235	1.1918274123006	480.770812887995	0	36.9558880561195						3486	50	5	NaN	NaN	NaN	8.0957E-07	1	30340	73.502	65.854	1	1700200			10812	372	9098	9336	10812	10812		
LAALPNVYEVISK	13	Unmodified	_LAALPNVYEVISK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.908485	1415.80242	1.8831	0.001335	-1.6818	-0.0011922	0.20134	0.00014273	708.908027419748	15.491	0.26614	15.491	15.358	15.624	0	462	67	1.01562323939346	0.0442943392475985	1.01562323939346	410.753807103791	0	17.9141907878788						973	31	4	NaN	NaN	NaN	0.029143	1	15977	39.702	34.874	1	581800			10813	951	9099	9337	10813	10813		
LAANSDHLMQIQK	13	Unmodified	_LAANSDHLMQIQK_			0	0	0	Q9NVM9	Q9NVM9	Q9NVM9	ASUN	Protein asunder homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.882475	1467.7504	1.9172	0.0014089	-1.036	-0.00076132	0.88122	0.00064759	734.881490973135	6.1702	0.062071	6.1702	6.1436	6.2057	0	378	22	1.07192009927972	0.0140460810726906	1.07192009927972	433.373771768382	0	5.67878439552231						107	8	3	NaN	NaN	NaN	2.396E-05	1	17522	68.548	59.034	1	20616			10814	3070	9100	9338	10814	10814		
LAASGEGGLQELSGHFENQK	20	Unmodified	_LAASGEGGLQELSGHFENQK_			0	0	0	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	691.339625	2070.99705	1.5321	0.0010592	0.92033	0.00063626	2.4524	0.0016955	691.674501435432	10.108	0.13302	10.108	10.046	10.179	0	537	43	0.965173861991602	0.0283005258697965	0.965173861991602	583.727992814677	0	17.1158894911308						499	16	5	NaN	NaN	NaN	2.6242E-11	1	32888	164.3	153.82	1	162320			10815	1897	9101	9339	10815	10815		
LAASIAPEIYGHEDVK	16	Unmodified	_LAASIAPEIYGHEDVK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.946327	1711.8781	1.7786	0.0015242	0.26622	0.00022814	2.0449	0.0017523	856.946750939799	9.3987	0.12411	9.3987	9.3455	9.4696	0	198	43	1.1918274123006	0.0278707851664095	1.1918274123006	481.209617824833	0	11.2530469932028						437	15	4	NaN	NaN	NaN	5.5036E-08	1	24826	99.589	80.032	1	110410			10816	952	9102	9340	10816	10816		
LAASIAPEIYGHEDVK	16	Unmodified	_LAASIAPEIYGHEDVK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.63331	1711.8781	0.67952	0.00038844	2.698	0.0015423	3.3775	0.0019307	572.304828156857	9.3898	0.17741	9.3898	9.31	9.4874	0	591	55	0.928742107665821	0.0364721440966675	0.928742107665821	562.47764213242	0	22.0887644112171						546	21	4	NaN	NaN	NaN	0.046855	1	24827	46.068	41.822	1	205540			10817	952	9102	9340	10817	10817		
LAATNALLNSLEFTK	15	Unmodified	_LAATNALLNSLEFTK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.445963	1604.87737	1.6538	0.0013288	-0.2841	-0.00022826	1.3697	0.0011005	803.446957988258	16.457	0.30147	16.457	16.351	16.652	0	360	58	1.08395544855938	0.0380830760737314	1.08395544855938	437.889748448783	0	15.3845701170148						822	35	5	NaN	NaN	NaN	2.0342E-34	1	21756	248.91	185.7	1	662610			10818	1780	9103	9341	10818	10818		
LAAVALINAAIQK	13	Unmodified	_LAAVALINAAIQK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.405912	1294.79727	1.1402	0.00073934	0.46267	0.0003	1.6029	0.0010393	648.406136506429	15.313	0.17734	15.313	15.269	15.446	0	450	40	1.02367897599655	0.0261757253352226	1.02367897599655	414.385899736184	0	10.5959502428231						403	21	4	NaN	NaN	NaN	1.5769E-07	1	12217	122.44	95.489	1	164470			10819	1095	9104	9342	10819	10819		
LAAVDATVNQVLASR	15	Unmodified	_LAAVDATVNQVLASR_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.428104	1526.84166	2.558	0.0019554	0.69544	0.00053161	3.2535	0.002487	764.42911613506	13.504	0.3015	13.504	13.451	13.753	0	411	97	1.04982941439551	0.0642594479765426	1.04982941439551	424.289132416407	0	25.9704910699453						1478	35	5	NaN	NaN	NaN	3.8264E-08	1	19339	128.97	117.02	1	1384000			10820	1811	9105	9343	10820	10820		
LACDFLAR	8	Unmodified	_LACDFLAR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.247295	964.480036	-0.31466	-0.00015206	-0.57781	-0.00027923	-0.89247	-0.00043129	483.247367080511	8.9198	0.18635	8.9198	8.831	9.0174	0	729	61	0.835224628594324	0.0408011186688414	0.835224628594324	339.318934320758	0	16.5758906428638						654	22	4	NaN	NaN	NaN	0.01958	1	3528	29.102	17.453	1	224780			10821	2220	9106	9344	10821	10821		
LACDVDQVTR	10	Unmodified	_LACDVDQVTR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.787512	1175.56047	2.1669	0.0012758	-1.9768	-0.0011639	0.19007	0.00011191	588.787559397187	5.1149	0.30146	5.1149	4.9553	5.2568	0	627	55	0.90440375274676	0.0365277897935211	0.90440375274676	366.494938833786	0	14.8022938266803						719	35	5	NaN	NaN	NaN	7.4057E-06	1	8749	109.88	80.776	1	358110			10822	1465	9107	9345	10822	10822		
LACLSEEGNEIESGK	15	Unmodified	_LACLSEEGNEIESGK_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.380159	1634.74577	2.9119	0.0023831	-2.4596	-0.0020129	0.4523	0.00037015	818.377218719913	7.7398	0.18632	7.7398	7.6865	7.8729	0	387	58	1.06589869032374	0.0381566484153506	1.06589869032374	430.527972110556	0	15.4118816487212						473	22	5	NaN	NaN	NaN	3.1109E-08	1	22606	123.99	120.01	1	119250			10823	3343	9108	9346	10823	10823		
LADALQELR	9	Unmodified	_LADALQELR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.790381	1027.56621	0.42949	0.0002211	0.58434	0.00030081	1.0138	0.00052191	514.790756340207	9.514	0.37241	9.514	9.3987	9.7711	0	684	61	0.86578508874114	0.0406992154745967	0.86578508874114	351.430771094915	0	16.5202160018628						978	43	4	NaN	NaN	NaN	1.1799E-08	1	4934	154.28	62.497	1	1551900			10824	493	9109	9347	10824	10824		
LADDLSTLQEK	11	Unmodified	_LADDLSTLQEK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.822075	1231.6296	1.6696	0.0010298	-1.0488	-0.00064692	0.62077	0.0003829	616.822198205939	7.9615	0.30162	7.9615	7.8108	8.1124	0	576	70	0.938871150116794	0.04654847479161	0.938871150116794	380.261333629913	0	18.8530503898156						616	35	4	NaN	NaN	NaN	4.6393E-05	1	10366	99.855	84.273	1	178590			10825	1782	9110	9348	10825	10825		
LADDVDLEQVANETHGHVGADLAALCSEAALQAIR	35	Unmodified	_LADDVDLEQVANETHGHVGADLAALCSEAALQAIR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	918.953514	3671.78495	0.80524	0.00073998	-1.6244	-0.0014928	-0.81919	-0.00075279	919.453334619096	17.583	0.097508	17.583	17.539	17.637	0	522	55	0.975277694896658	0.0363360970921059	0.975277694896658	784.164668186128	0	29.2157645648089						574	12	6	NaN	NaN	NaN	0.0027564	1	38711	13.327	13.049	1	133830			10826	1265	9111	9349	10826	10826		
LADDVDLEQVANETHGHVGADLAALCSEAALQAIR	35	Unmodified	_LADDVDLEQVANETHGHVGADLAALCSEAALQAIR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	918.953514	3671.78495	1.5967	0.0014673	-0.75751	-0.00069612	0.83914	0.00077113	919.453460903055	17.575	0.11526	17.575	17.539	17.654	0	282	43	1.13599383354359	0.0279782603553778	1.13599383354359	913.387263220621	0	22.4957089564097						463	14	7	NaN	NaN	NaN	1.568E-07	1	38713	75.533	71.733	1	129580			10827	1265	9111	9349	10827	10827		
LADEQLSSVIQDMAVR	16	Unmodified	_LADEQLSSVIQDMAVR_			0	0	0	Q8NFV4	Q8NFV4	Q8NFV4	ABHD11	Alpha/beta hydrolase domain-containing protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.953826	1773.8931	1.2702	0.0011279	-7.93	-0.0070414	-6.6597	-0.0059135	888.448274303624	16.351	0.097537	16.351	16.307	16.404	0	312	34	1.11600111266355	0.02201470966097	1.11600111266355	450.467644560034	0	8.88611516074707						241	12	3	NaN	NaN	NaN	0.003871	1	26511	45.654	34.682	1	70140			10828	2321	9112	9350	10828	10828		
LADFGTCMK	9	Unmodified	_LADFGTCMK_			0	0	0	Q13464;O75116	Q13464;O75116	O75116	ROCK1;ROCK2	Rho-associated protein kinase 1;Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.738445	1041.46234	0.64502	0.00033653	2.1551	0.0011244	2.8002	0.0014609	521.73964798268	7.3408	0.097537	7.3408	7.2964	7.394	0	693	40	0.85967808974117	0.0264636674362559	0.85967808974117	348.890321880455	0	10.7399706473297						164	12	2	NaN	NaN	NaN	0.011701	1	5249	58.426	48.347	1	46169			10829	301;1671	9113	9351	10829	10829		
LADFGVAGQLTDTMAK	16	Unmodified	_LADFGVAGQLTDTMAK_			0	0	0	Q13043;Q13188	Q13043;Q13188	Q13043	STK4;STK3	Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit;Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.413805	1636.81306	2.2863	0.0018734	1.4107	0.0011559	3.697	0.0030294	819.41572728312	13.832	0.097533	13.832	13.797	13.895	0	348	34	1.09197348738011	0.0220420155259144	1.09197348738011	441.05516827839	0	8.90291291806147						260	12	4	NaN	NaN	NaN	0.066673	1	22690	22.724	16.858	1	53402			10830	1620;1640	9114	9352	10830	10830		
LADFGVLHR	9	Unmodified	_LADFGVLHR_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	343.194298	1026.56106	-1.5801	-0.00054227	-1.2749	-0.00043755	-2.855	-0.00097982	343.193899601108	8.352	0.11534	8.352	8.2987	8.414	0	885	31	0.728786607772777	0.0205430923545996	0.728786607772777	443.732588170247	0	12.5079679597638						258	14	3	NaN	NaN	NaN	0.018657	1	4899	44.767	38.005	1	115070			10831	857	9115	9353	10831	10831		
LADFGVLHR	9	Unmodified	_LADFGVLHR_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.287808	1026.56106	1.1524	0.00059268	0.2768	0.00014235	1.4292	0.00073504	514.288200129678	8.343	0.18627	8.343	8.281	8.4672	0	645	37	0.892219381832517	0.0243788876669334	0.892219381832517	362.165401958808	0	9.89576087561488						466	22	3	NaN	NaN	NaN	3.4227E-06	1	4901	133.9	116.51	1	429550			10832	857	9115	9353	10832	10832		
LADFGVSAK	9	Unmodified	_LADFGVSAK_			0	0	0	O94804;Q9H2G2	O94804;Q9H2G2	Q9H2G2	STK10;SLK	Serine/threonine-protein kinase 10;STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.247818	906.481082	-0.88253	-0.00040089	-0.89772	-0.00040779	-1.7803	-0.00080868	454.247400361779	6.8441	0.097537	6.8441	6.8087	6.9062	0	768	25	0.808687310729125	0.0163454259019459	0.808687310729125	328.833134166624	0	6.64647207556533						183	12	3	NaN	NaN	NaN	0.043921	1	2441	33.426	11.04	1	57097			10833	2866;386	9116	9354	10833	10833		
LADISLHDPVSISVLDK	17	Unmodified	_LADISLHDPVSISVLDK_			0	0	0	Q9H8H2	Q9H8H2	Q9H8H2	DDX31	Probable ATP-dependent RNA helicase DDX31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.003403	1820.98838	-1.3203	-0.00080276	-1.5637	-0.00095071	-2.884	-0.0017535	608.002404408901	14.373	0.070932	14.373	14.338	14.409	-1.7764E-15	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	500.657351218378	0	11.1182549257276						188	9	4	NaN	NaN	NaN	0.0001082	1	27755	81.908	66.958	1	48812			10834	2926	9117	9355	10834	10834		
LADMGIAIR	9	Unmodified	_LADMGIAIR_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.27077	958.526987	-0.58608	-0.00028148	-1.6912	-0.00081224	-2.2773	-0.0010937	480.270138258526	9.975	0.13298	9.975	9.913	10.046	0	735	31	0.831145085810763	0.0203977162825675	0.831145085810763	337.691054067824	0	8.28751373211503						247	16	3	NaN	NaN	NaN	0.0015069	1	3410	79.809	60.322	1	74970			10835	3395	9118	9356	10835	10835		
LADMHSTEISLQQR	14	Unmodified	_LADMHSTEISLQQR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.606878	1627.7988	-0.71831	-0.00039048	0.17266	9.3859E-05	-0.54565	-0.00029662	543.606941764245	7.4826	0.088661	7.4826	7.4472	7.5358	0	759	34	0.814815566123307	0.0224640226482813	0.814815566123307	493.684303672154	0	13.610608142351						269	11	4	NaN	NaN	NaN	6.1572E-08	1	22407	78.043	68.528	1	78618			10836	352	9119	9357	10836	10836		
LADMHSTEISLQQR	14	Unmodified	_LADMHSTEISLQQR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.606878	1627.7988	-0.025212	-1.3705E-05	1.4618	0.00079462	1.4365	0.00078092	543.608286841587	7.4649	0.10642	7.4649	7.4028	7.5092	0	699	40	0.85560534332665	0.0264820512722772	0.85560534332665	518.398200896367	0	16.0450701280307						177	13	3	NaN	NaN	NaN	0.0030537	1	22408	58.476	53.325	1	32533			10837	352	9119	9357	10837	10837		
LADMHSTEISLQQR	14	Unmodified	_LADMHSTEISLQQR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.906679	1627.7988	2.2753	0.0018542	-0.4993	-0.00040688	1.776	0.0014473	814.906114219046	7.4738	0.13298	7.4738	7.4294	7.5624	0	372	37	1.07593298845566	0.024074020010092	1.07593298845566	434.59651091609	0	9.72410476523027						315	16	4	NaN	NaN	NaN	3.5478E-05	1	22409	78.043	59.231	1	79141			10838	352	9119	9357	10838	10838		
LADPGHR	7	Unmodified	_LADPGHR_			0	0	0		REV__P04629	REV__P04629			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	383.203744	764.392936	-1.5971	-0.00061203	-1.8645	-0.00071447	-3.4616	-0.0013265	383.203037297616	9.0617	0.12415	9.0617	9.0085	9.1326	0	855	34	0.749315378969369	0.022567485025674	0.749315378969369	305.534665867646	0	9.20193177707927						245	15	3	NaN	NaN	NaN	0.021427	1	713	56.89	23.919	1	75900	+		10839	3485	9120	9358	10839	10839		
LADQIFAYYK	10	Unmodified	_LADQIFAYYK_			0	0	0	Q7L576;Q96F07	Q7L576	Q7L576	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.321514	1230.62847	0.99595	0.00061383	-0.084374	-5.2001E-05	0.91158	0.00056182	616.321127389434	12.653	0.16846	12.653	12.564	12.733	0	534	37	0.967195187796614	0.0242575920930522	0.967195187796614	391.736655441244	0	9.82489172349824						283	20	3	NaN	NaN	NaN	0.0039092	1	10326	50.834	19.916	1	71392			10840	2117	9121	9359	10840	10840		
LADQSGLDVIR	11	Unmodified	_LADQSGLDVIR_			0	0	0	Q8N983	Q8N983	Q8N983	MRPL43	39S ribosomal protein L43, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.824952	1185.63535	1.0734	0.00063739	-0.19938	-0.00011839	0.87399	0.000519	593.823196518285	8.9464	0.1775	8.9464	8.8842	9.0617	0	603	52	0.920633820089869	0.034438755237733	0.920633820089869	373.035131717245	0	13.9543706910871						437	21	3	NaN	NaN	NaN	0.00084581	1	9032	64.906	46.57	1	171700			10841	2277	9122	9360	10841	10841		
LADSGDGAGPSPEEK	15	Unmodified	_LADSGDGAGPSPEEK_			0	0	0	Q92917	Q92917	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.32571	1428.63687	2.5358	0.0018139	-1.7974	-0.0012857	0.73839	0.00052819	715.825862862195	3.1375	0.15075	3.1375	3.102	3.2528	0	552	52	0.955063035883597	0.0343768196324545	0.955063035883597	386.227557506314	0	13.9019882276087						376	18	3	NaN	NaN	NaN	1.2743E-06	1	16346	119.52	108.17	1	76992			10842	2444	9123	9361	10842	10842		
LADSPPPQVWQLISK	15	Unmodified	_LADSPPPQVWQLISK_			0	0	0	P11441	P11441	P11441	UBL4A	Ubiquitin-like protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.96178	1677.90901	1.9128	0.0016066	-2.7165	-0.0022818	-0.8038	-0.00067516	839.960842405335	15.775	0.18624	15.775	15.721	15.908	0	360	34	1.08395544855938	0.0220541677756794	1.08395544855938	437.726635940108	0	8.90599026162653						311	22	3	NaN	NaN	NaN	0.0015494	1	23868	63.766	57.738	1	120670			10843	654	9124	9362	10843	10843		
LAEAQIEELR	10	Unmodified	_LAEAQIEELR_			0	0	0	Q9NR28	Q9NR28	Q9NR28	DIABLO	Diablo homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.319502	1170.62445	1.3086	0.00076723	-0.11694	-6.8566E-05	1.1916	0.00069867	586.820742807821	8.5559	0.16847	8.5559	8.4672	8.6357	0	555	61	0.953040030838688	0.0404853363286275	0.953040030838688	386.222879304427	0	16.4068272690398						311	20	2	NaN	NaN	NaN	0.00040417	1	8627	95.311	61.588	1	171740			10844	3010	9125	9363	10844	10844		
LAEDAPNFDGPAAEGQPGQK	20	Unmodified	_LAEDAPNFDGPAAEGQPGQK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.47143	2010.9283	2.7599	0.0027778	-0.90789	-0.00091376	1.8521	0.001864	1006.97162427006	7.8729	0.13298	7.8729	7.8197	7.9527	0	276	64	1.13998907770044	0.0419298952729088	1.13998907770044	459.729309312346	0	16.9092863874076						757	16	5	NaN	NaN	NaN	1.5258E-07	1	31816	98.328	96.345	1	219400			10845	1457	9126	9364	10845	10845		
LAEDILNTMFDTSYSK	16	Unmodified	_LAEDILNTMFDTSYSK_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.440217	1846.86588	1.7555	0.0016229	1.2736	0.0011774	3.0291	0.0028002	924.44099267873	17.716	0.15072	17.716	17.672	17.823	0	258	37	1.15196821829984	0.0239516960095993	1.15196821829984	464.843013549341	0	9.66500496789041						424	18	5	NaN	NaN	NaN	1.7946E-06	1	28405	106.97	101.58	1	146640			10846	1621	9127	9365	10846	10846		
LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK	32	Unmodified	_LAEEEDLFDSAHPEEGDLDLASESTAHAQSSK_			0	0	0	Q15424;Q14151	Q15424;Q14151	Q15424	SAFB;SAFB2	Scaffold attachment factor B1;Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	857.886663	3427.51755	2.3111	0.0019826	2.4051	0.0020633	4.7162	0.004046	858.391571240333	12.13	0.1419	12.13	12.094	12.236	0	345	70	1.09397730668811	0.046081523915936	1.09397730668811	879.840930764869	0	37.0614734376933						791	17	4	NaN	NaN	NaN	6.138E-05	1	38619	80.82	68.445	1	231590			10847	1846;1727	9128	9366	10847	10847		
LAEFQTDSQGK	11	Unmodified	_LAEFQTDSQGK_			0	0	0	Q86TI2	Q86TI2	Q86TI2	DPP9	Dipeptidyl peptidase 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.298767	1222.58298	1.724	0.0010556	1.7696	0.0010835	3.4936	0.0021391	612.300198277949	4.6805	0.22168	4.6805	4.6273	4.8489	0	573	28	0.940896116921038	0.0182247029861181	0.940896116921038	381.11272581751	0	7.38196928156401						168	26	2	NaN	NaN	NaN	0.0040124	1	10084	76.85	50.394	1	43789			10848	2158	9129	9367	10848	10848		
LAEIGAPIQGNREELVER	18	Unmodified	_LAEIGAPIQGNREELVER_			0	0	1	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.360361	1993.05925	-0.068816	-4.5787E-05	1.7355	0.0011547	1.6666	0.0011089	665.695701231968	9.3189	0.07099	9.3189	9.2834	9.3544	0	636	31	0.898312834727904	0.0203044701825483	0.898312834727904	543.43240744006	0	12.2831453437258						229	9	4	NaN	NaN	NaN	0.0031519	1	31513	22.724	16.042	1	60236			10849	1667	9130	9368	10849	10849		
LAEISDVWEEMK	12	Unmodified	_LAEISDVWEEMK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.350142	1448.68573	1.2738	0.00092395	0.79846	0.00057916	2.0722	0.0015031	725.350356512504	15.092	0.12415	15.092	15.065	15.189	-1.7764E-15	426	52	1.03977710643793	0.0341967320242422	1.03977710643793	420.430118092215	0	13.8273251010247						366	15	4	NaN	NaN	NaN	0.0022193	1	16938	77.358	67.108	1	90534			10850	1511	9131	9369	10850	10850		
LAELCGVLK	9	Unmodified	_LAELCGVLK_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.786253	1001.55795	-0.18025	-9.0448E-05	-0.51446	-0.00025815	-0.69472	-0.0003486	501.786387125678	10.002	0.13298	10.002	9.9484	10.081	0	702	37	0.853568545818287	0.0244466676100031	0.853568545818287	346.590857558991	0	9.92655075321204						285	16	3	NaN	NaN	NaN	0.044796	1	4340	33.396	13.162	1	77290			10851	2356	9132	9370	10851	10851		
LAELEEFINGPNNAHIQQVGDR	22	Unmodified	_LAELEEFINGPNNAHIQQVGDR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.078693	2463.21425	1.1046	0.00090808	-1.8722	-0.0015391	-0.76756	-0.00063099	822.411908372223	13.336	0.13303	13.336	13.283	13.416	0	537	79	0.965173861991602	0.0525290699698617	0.965173861991602	583.109090018273	0	31.7353995957039						1008	16	5	NaN	NaN	NaN	1.5134E-16	1	36639	112.06	95.369	1	318850			10852	1503	9133	9371	10852	10852		
LAELHADLK	9	Unmodified	_LAELHADLK_			0	0	0	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.287474	1008.5604	1.0468	0.00052893	0.96347	0.00048683	2.0103	0.0010158	505.288162499881	5.5494	0.16851	5.5494	5.5139	5.6825	0	645	37	0.892219381832517	0.0243755060720344	0.892219381832517	362.250906343042	0	9.8967242216022						312	20	3	NaN	NaN	NaN	0.003766	1	4482	72.038	31.014	1	84155			10853	912	9134	9372	10853	10853		
LAELLTQQHGLQCR	14	Unmodified	_LAELLTQQHGLQCR_			0	0	0	Q9H6R4	Q9H6R4	Q9H6R4	NOL6	Nucleolar protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.938313	1665.86207	2.7308	0.0022773	-1.2874	-0.0010736	1.4434	0.0012037	834.438394359862	8.1922	0.070937	8.1922	8.1656	8.2366	0	300	40	1.12400150285141	0.0259994834338622	1.12400150285141	453.925052467236	0	10.4998230446291						236	9	4	NaN	NaN	NaN	0.0029367	1	23516	75.474	63.517	1	47544			10854	2906	9135	9373	10854	10854		
LAELSDYR	8	Unmodified	_LAELSDYR_			0	0	0	Q96PK6	Q96PK6	Q96PK6	RBM14	RNA-binding protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.748182	965.481811	0.46263	0.0002238	1.9009	0.00091953	2.3635	0.0011433	483.749110038554	6.5515	0.13302	6.5515	6.5072	6.6402	0	669	31	0.875957769340875	0.0203411270160542	0.875957769340875	355.862006129497	0	8.26367950627895						245	16	3	NaN	NaN	NaN	3.841E-05	1	3550	105.04	91.392	1	74757			10855	2596	9136	9374	10855	10855		
LAEMPADSGYPAYLGAR	17	Unmodified	_LAEMPADSGYPAYLGAR_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.429987	1780.84542	2.1369	0.0019049	-0.083325	-7.4278E-05	2.0536	0.0018307	891.429168217541	11.793	0.23056	11.793	11.678	11.908	0	300	94	1.12400150285141	0.0619988263295177	1.12400150285141	453.683192575213	0	25.0247222923955						1408	27	5	NaN	NaN	NaN	1.2217E-10	1	26700	135.21	133.07	1	474600			10856	1006	9137	9375	10856	10856		
LAENFCVCHLATGDMLR	17	Unmodified	_LAENFCVCHLATGDMLR_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.64635	2005.91722	0.79426	0.00053187	-1.776	-0.0011893	-0.98169	-0.00065739	669.979794289371	12.786	0.14188	12.786	12.742	12.884	0	666	127	0.877991458330206	0.0852552962455975	0.877991458330206	531.115522643982	0	51.5727240783912						963	17	6	NaN	NaN	NaN	3.9154E-10	1	31728	66.509	56.931	1	353750			10857	1257	9138	9376	10857	10857		
LAEPSQLLK	9	Unmodified	_LAEPSQLLK_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.797675	997.580796	-0.46194	-0.00023087	-0.10357	-5.1766E-05	-0.56551	-0.00028264	499.797850261384	8.7599	0.11531	8.7599	8.6891	8.8044	0	714	37	0.845418525735192	0.0244500640244978	0.845418525735192	343.300090805631	0	9.92846613162897						238	14	2	NaN	NaN	NaN	0.0075663	1	4239	56.378	28.642	1	66429			10858	706	9139	9377	10858	10858		
LAEQAERYDEMVESMK	16	Unmodified	_LAEQAERYDEMVESMK_			0	0	1	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.629131	1927.86556	0.76057	0.00048953	0.34274	0.0002206	1.1033	0.00071013	643.963891707976	10.268	0.17733	10.268	10.214	10.392	0	621	55	0.908462957275599	0.0365379208740513	0.908462957275599	549.701096467182	0	22.1087002020754						915	21	6	NaN	NaN	NaN	1.1928E-08	1	30229	165.02	150.05	1	570210			10859	1375	9140	9378	10859	10859		
LAEQFVLLNLVYETTDK	17	Unmodified	_LAEQFVLLNLVYETTDK_			0	0	0	O95994	O95994	O95994	AGR2	Anterior gradient protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.535506	1995.05646	0.39776	0.00039717	-2.9497	-0.0029454	-2.5519	-0.0025482	999.035227366778	19.995	0.0088949	19.995	19.986	19.995	0	168	13	1.21171599086077	0.0079499737047537	1.21171599086077	488.681652397042	0	3.2062020439231						18	2	3	NaN	NaN	NaN	0.033397	1	31548	26.21	19.688	1	1905.3			10860	466	9141	9379	10860	10860		
LAESLLALSQQEELADLPK	19	Unmodified	_LAESLLALSQQEELADLPK_			0	0	0	Q9BVJ6	Q9BVJ6	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.56225	2067.10995	0.339	0.00035071	2.7208	0.0028149	3.0598	0.0031656	1035.06756558155	16.768	0.23059	16.768	16.723	16.954	0	156	103	1.21966378336455	0.0674452453966159	1.21966378336455	491.768466606584	0	27.1939245560799						549	27	4	NaN	NaN	NaN	0.0022308	1	32836	22.724	15.734	1	127070			10861	2765	9142	9380	10861	10861		
LAETVFNFQEK	11	Unmodified	_LAETVFNFQEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.340435	1324.66632	0.59386	0.00039393	-1.8804	-0.0012474	-1.2866	-0.00085343	663.33911279449	11.749	0.23056	11.749	11.678	11.908	0	513	40	0.981336640919867	0.026248176167575	0.981336640919867	397.151137524772	0	10.6227492057482						532	27	3	NaN	NaN	NaN	2.2682E-07	1	13132	121.8	87.016	1	175770			10862	1737	9143	9381	10862	10862		
LAEVGQYEQVK	11	Unmodified	_LAEVGQYEQVK_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.33261	1262.65067	1.5523	0.00098156	-0.95981	-0.00060692	0.59247	0.00037464	632.332658925133	6.3565	0.1596	6.3565	6.2767	6.4363	0	537	34	0.965173861991602	0.0222345870481429	0.965173861991602	390.807982895354	0	9.00299361284561						241	19	3	NaN	NaN	NaN	0.00072628	1	11300	76.572	65.217	1	74673			10863	10	9144	9382	10863	10863		
LAEVLVGEQQQCQDAK	16	Unmodified	_LAEVLVGEQQQCQDAK_			0	0	0	Q9H6D7	Q9H6D7	Q9H6D7	HAUS4	HAUS augmin-like complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.448908	1814.88326	1.4153	0.0012857	-1.4467	-0.0013143	-0.031428	-2.8551E-05	908.948356503833	7.5536	0.061995	7.5536	7.527	7.589	0	306	25	1.12000185836644	0.0160029839487266	1.12000185836644	452.003300812967	0	6.45838354074834						66	8	2	NaN	NaN	NaN	0.00021309	1	27602	44.571	41.486	1	11055			10864	2903	9145	9383	10864	10864		
LAEVTEEEWLSIPEVGDAR	19	Unmodified	_LAEVTEEEWLSIPEVGDAR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.03132	2142.04808	0.68138	0.00073046	0.98142	0.0010521	1.6628	0.0017826	1072.03352188097	16.821	0.11527	16.821	16.75	16.865	0	153	73	1.22165005014568	0.04766716569866	1.22165005014568	492.454336726228	0	19.2149154866025						507	11	4	NaN	NaN	NaN	8.7556E-08	1	33915	88.796	77.586	1	123220			10865	396	9146	9384	10865	10865		
LAFAYLEDLHSEFDEQHGK	19	Unmodified	_LAFAYLEDLHSEFDEQHGK_			0	0	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	563.018192	2248.04366	-0.12336	-6.9455E-05	-1.7568	-0.00098912	-1.8802	-0.0010586	563.267881460368	14.586	0.25715	14.586	14.542	14.799	0	702	34	0.853568545818287	0.0224078882408908	0.853568545818287	687.944175084351	0	18.0599159455716						598	30	6	NaN	NaN	NaN	0.0091389	1	35165	33.456	32.513	1	303760			10866	331	9147	9385	10866	10866		
LAFAYLEDLHSEFDEQHGK	19	Unmodified	_LAFAYLEDLHSEFDEQHGK_			0	0	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.355164	2248.04366	0.89119	0.00066871	1.3665	0.0010254	2.2577	0.0016941	750.689896347165	14.586	0.18622	14.586	14.524	14.71	0	525	37	0.973257487423603	0.0242475250130607	0.973257487423603	588.308329381724	0	14.6569855525464						372	22	5	NaN	NaN	NaN	0.0010535	1	35167	62.494	60.87	1	180490			10867	331	9147	9385	10867	10867		
LAFDMATNAACASLLK	16	Unmodified	_LAFDMATNAACASLLK_			0	0	0	Q92882	Q92882	Q92882	OSTF1	Osteoclast-stimulating factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.923483	1695.83241	1.597	0.0013557	1.4065	0.001194	3.0034	0.0025497	848.925585847341	15.127	0.23059	15.127	15.03	15.26	0	294	55	1.12800004657306	0.0359918600529883	1.12800004657306	455.473425261073	0	14.5330984955681						443	27	5	NaN	NaN	NaN	0.05998	1	24372	29.98	13.849	1	92272			10868	2438	9148	9386	10868	10868		
LAFLDPDTGK	10	Unmodified	_LAFLDPDTGK_			0	0	0	Q8WWQ0	Q8WWQ0	Q8WWQ0	PHIP	PH-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.784764	1075.55498	0.9264	0.00049913	-6.7282	-0.003625	-5.8018	-0.0031259	538.781280267322	10.809	0.17735	10.809	10.711	10.888	0	645	37	0.892219381832517	0.0243788876669334	0.892219381832517	361.947078482205	0	9.88979543301247						305	21	3	NaN	NaN	NaN	0.049466	1	6097	32.14	1.5475	1	68666			10869	2392	9149	9387	10869	10869		
LAFLLFK	7	Unmodified	_LAFLLFK_			0	0	0	Q96DV4	Q96DV4	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.273107	850.531661	-2.2246	-0.00094827	-0.69339	-0.00029557	-2.9179	-0.0012438	426.272655157652	16.626	0.18624	16.626	16.581	16.768	0	816	31	0.775960037304758	0.0204773388322395	0.775960037304758	315.834923608707	0	8.33478328117798						308	22	3	NaN	NaN	NaN	0.043568	1	1572	39.761	23.214	1	113610			10870	2507	9150	9388	10870	10870		
LAFPSPFGHLSEGFSHSR	18	Unmodified	_LAFPSPFGHLSEGFSHSR_			0	0	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.326991	1971.95914	0.90216	0.00059392	-0.18845	-0.00012406	0.71371	0.00046986	658.661364219785	13.753	0.40786	13.753	13.487	13.895	0	564	55	0.946969335010767	0.0364317543257808	0.946969335010767	572.909410828846	0	22.0409406456725						957	47	3	NaN	NaN	NaN	0.01833	1	31140	37.146	34.061	1	322280			10871	1673	9151	9389	10871	10871		
LAGANPAVITCDELLLGHEK	20	Unmodified	_LAGANPAVITCDELLLGHEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.05407	2120.09359	0.72984	0.0007744	-0.73401	-0.00077882	-0.0041691	-4.4236E-06	1061.55533930985	13.318	0.12415	13.318	13.256	13.38	0	108	58	1.25141139212444	0.0376718785642967	1.25141139212444	504.48496753864	0	15.1867695581431						591	15	4	NaN	NaN	NaN	2.9507E-07	1	33624	65.212	64.033	1	142610			10872	1465	9152	9390	10872	10872		
LAGANPAVITCDELLLGHEK	20	Unmodified	_LAGANPAVITCDELLLGHEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.70514	2120.09359	1.4424	0.0010208	0.034953	2.4737E-05	1.4773	0.0010455	708.039890335249	13.318	0.24824	13.318	13.203	13.451	0	531	43	0.969216233931596	0.0282887809416775	0.969216233931596	586.082454286817	0	17.1061498792957						1058	29	6	NaN	NaN	NaN	2.4583E-11	1	33625	153.08	140.4	1	683150			10873	1465	9152	9390	10873	10873		
LAGAWASEAYSPQGLK	16	Unmodified	_LAGAWASEAYSPQGLK_			0	0	0	O14548	O14548	O14548	COX7A2L	Cytochrome c oxidase subunit 7A-related protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.920112	1647.82567	2.7455	0.0022648	-2.6434	-0.0021806	0.10211	8.4231E-05	824.920472277427	11.128	0.16847	11.128	11.039	11.208	0	354	46	1.08796502040166	0.0300697247632449	1.08796502040166	439.411488462097	0	12.1446758563845						344	20	3	NaN	NaN	NaN	0.0025129	1	22972	64.266	61.786	1	153460			10874	103	9153	9391	10874	10874		
LAGDHIEYYK	10	Unmodified	_LAGDHIEYYK_			0	0	0	Q15070	Q15070	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	403.536389	1207.58734	-0.86555	-0.00034928	1.4739	0.00059476	0.60831	0.00024547	403.536890688759	5.1149	0.088673	5.1149	5.0795	5.1681	0	819	22	0.773912161060781	0.0143351345420983	0.773912161060781	470.273830585914	0	8.71085760409386						139	11	3	NaN	NaN	NaN	0.04308	1	9668	29.755	11.419	1	34919			10875	1809	9154	9392	10875	10875		
LAGDHIEYYK	10	Unmodified	_LAGDHIEYYK_			0	0	0	Q15070	Q15070	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.800946	1207.58734	2.0674	0.0012504	0.16343	9.8845E-05	2.2308	0.0013492	604.801072790053	5.1149	0.097536	5.1149	5.0706	5.1681	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	382.805884925274	0	7.38094802608987						170	12	2	NaN	NaN	NaN	0.034028	1	9669	41.796	30.44	1	55935			10876	1809	9154	9392	10876	10876		
LAGEELAGEEAPQEK	15	Unmodified	_LAGEELAGEEAPQEK_			0	0	0	Q7Z4V5	Q7Z4V5	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.883392	1569.75223	2.3345	0.0018347	-1.3008	-0.0010222	1.0338	0.00081242	785.882340280906	6.3565	0.2128	6.3565	6.2944	6.5072	0	426	52	1.03977710643793	0.0341967320242422	1.03977710643793	420.123266286298	0	13.8172331987188						684	25	4	NaN	NaN	NaN	3.5304E-08	1	20651	157.74	96.258	1	242340			10877	2141	9155	9393	10877	10877		
LAGENMTGAAK	11	Unmodified	_LAGENMTGAAK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.766049	1061.51754	1.0687	0.00056829	-0.49196	-0.00026161	0.57672	0.00030668	531.766418061635	3.5898	0.21279	3.5898	3.4834	3.6962	0	714	55	0.845418525735192	0.0366649158136713	0.845418525735192	343.018669260706	0	14.8763603447468						499	25	4	NaN	NaN	NaN	0.0058276	1	5760	57.032	27.931	1	191730			10878	458	9156	9394	10878	10878		
LAGESESNLR	10	Unmodified	_LAGESESNLR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.272552	1074.53055	1.5857	0.00085356	6.2927	0.0033872	7.8784	0.0042407	538.276850137811	3.4746	0.27498	3.4746	3.439	3.714	0	687	52	0.863749705078866	0.0346063393446338	0.863749705078866	350.401937045928	0	14.0389377491262						585	32	5	NaN	NaN	NaN	0.0023529	1	6067	86.205	56.896	1	348620			10879	1265	9157	9395	10879	10879		
LAGFLDLTEQEFR	13	Unmodified	_LAGFLDLTEQEFR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.896106	1537.77766	1.1885	0.00091498	1.5689	0.0012079	2.7574	0.0021229	769.897748508832	17.14	0.2217	17.14	17.06	17.282	0	399	76	1.0578662689527	0.0501853643990366	1.0578662689527	427.509909072	0	20.2811463042657						892	26	4	NaN	NaN	NaN	3.6988E-05	1	19667	125.17	112.59	1	304600			10880	3329	9158	9396	10880	10880		
LAGGDWFTSR	10	Unmodified	_LAGGDWFTSR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.272355	1108.53016	0.63681	0.00035361	2.0015	0.0011114	2.6383	0.001465	555.77500390668	10.693	0.45225	10.693	10.445	10.897	0	669	61	0.875957769340875	0.0406709767799367	0.875957769340875	355.216482278568	0	16.4928057130805						1088	52	4	NaN	NaN	NaN	0.056622	1	6942	20.183	13.492	1	568020			10881	905	9159	9397	10881	10881		
LAGGNDVGIFVAGVLEDSPAAK	22	Unmodified	_LAGGNDVGIFVAGVLEDSPAAK_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.703905	2099.08988	0.075053	5.259E-05	-2.2184	-0.0015544	-2.1434	-0.0015019	701.369081918336	18.71	0.088674	18.71	18.656	18.745	0	492	34	0.995464410099171	0.0221885084340552	0.995464410099171	601.993826344344	0	13.4182045662084						156	11	3	NaN	NaN	NaN	0.072601	1	33300	15.141	14.622	1	27540			10882	1568	9160	9398	10882	10882		
LAGGYENVPTVDIHMK	16	Unmodified	_LAGGYENVPTVDIHMK_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.962662	1742.86616	0.59568	0.00034666	-2.4799	-0.0014432	-1.8842	-0.0010966	582.295190636887	10.418	0.15962	10.418	10.365	10.525	0	651	52	0.888155670855968	0.0345391592225333	0.888155670855968	537.82041452304	0	20.9151002914134						324	19	2	NaN	NaN	NaN	0.012227	1	25682	58.313	44.535	1	191560			10883	268	9161	9399	10883	10883		
LAGLFNEQR	9	Unmodified	_LAGLFNEQR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.282723	1046.55089	0.79714	0.00041793	-7.7505	-0.0040635	-6.9534	-0.0036455	524.778923548258	8.6002	0.26624	8.6002	8.5559	8.8221	0	654	49	0.886123392477847	0.0325232324981577	0.886123392477847	359.600071496016	0	13.1983387764041						502	31	4	NaN	NaN	NaN	0.051479	1	5397	34.781	24.702	1	276940			10884	3410	9162	9400	10884	10884		
LAGPQLVQMFIGDGAK	16	Unmodified	_LAGPQLVQMFIGDGAK_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.942533	1643.87051	1.9153	0.0015762	-0.69028	-0.00056806	1.2251	0.0010082	823.443681383512	18.319	0.2926	18.319	18.124	18.417	0	336	70	1.09998710857178	0.0460942233022623	1.09998710857178	444.275920558591	0	18.6170849916915						1450	34	5	NaN	NaN	NaN	0.00014108	1	22865	90.156	78.674	1	583190			10885	746	9163	9401	10885	10885		
LAGSLLTQALESHAEGFR	18	Unmodified	_LAGSLLTQALESHAEGFR_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.002285	1898.98503	0.020979	1.33E-05	-1.1174	-0.00070841	-1.0964	-0.0006951	634.335909068429	14.746	0.16853	14.746	14.675	14.843	0	609	49	0.916577990479294	0.0324646425332216	0.916577990479294	554.671632855861	0	19.6461364674135						576	20	4	NaN	NaN	NaN	4.9707E-05	1	29583	86.729	84.014	1	199800			10886	1701	9164	9402	10886	10886		
LAGSLLTQALESHAEGFR	18	Unmodified	_LAGSLLTQALESHAEGFR_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.499789	1898.98503	0.67422	0.00064085	-0.81987	-0.00077929	-0.14565	-0.00013844	951.000397265645	14.746	0.10642	14.746	14.693	14.799	0	132	40	1.23554629282893	0.0258037728565319	1.23554629282893	498.466484890676	0	10.4102258469516						211	13	3	NaN	NaN	NaN	2.1992E-05	1	29584	90.376	85.821	1	50142			10887	1701	9164	9402	10887	10887		
LAGTQPLEVLEAVQR	15	Unmodified	_LAGTQPLEVLEAVQR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.973667	1622.89917	-0.75118	-0.00040712	-0.65354	-0.0003542	-1.4047	-0.00076132	541.973306590619	15.269	0.24824	15.269	15.198	15.446	0	735	52	0.831145085810763	0.0346930021779448	0.831145085810763	503.590926931761	0	21.0204950051461						770	29	5	NaN	NaN	NaN	2.7885E-08	1	22283	159.12	124.93	1	546620			10888	804	9165	9403	10888	10888		
LAGTQPLEVLEAVQR	15	Unmodified	_LAGTQPLEVLEAVQR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.456862	1622.89917	2.1607	0.0017555	0.095735	7.778E-05	2.2564	0.0018332	812.457360806942	15.251	0.34592	15.251	15.145	15.491	0	360	82	1.08395544855938	0.0541404572625896	1.08395544855938	437.848137149747	0	21.8692552248025						1131	40	5	NaN	NaN	NaN	5.8202E-17	1	22284	181.44	140.91	1	882160			10889	804	9165	9403	10889	10889		
LAGVTALSCWLPLR	14	Unmodified	_LAGVTALSCWLPLR_			0	0	0	O75608	O75608	O75608	LYPLA1	Acyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.934511	1555.85447	0.70205	0.00054685	-0.32056	-0.0002497	0.38149	0.00029715	779.436136448415	18.869	0.12412	18.869	18.843	18.967	0	402	73	1.05585747106793	0.0481945603129839	1.05585747106793	426.65387519008	0	19.4745943312018						400	15	4	NaN	NaN	NaN	7.1164E-06	1	20243	106	95.216	1	92508			10890	347	9166	9404	10890	10890		
LAHEIEALK	9	Unmodified	_LAHEIEALK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.295299	1022.57605	1.7468	0.00089486	1.0144	0.00051965	2.7611	0.0014145	512.295814352357	5.0883	0.16845	5.0883	5.0617	5.2302	0	621	34	0.908462957275599	0.0223209853619647	0.908462957275599	368.777924964324	0	9.06089411683871						225	20	3	NaN	NaN	NaN	0.0014723	1	4814	79.059	66.231	1	54076			10891	240	9167	9405	10891	10891		
LAHEVGWK	8	Unmodified	_LAHEVGWK_			0	0	0	P40429	P40429	P40429	RPL13A	60S ribosomal protein L13a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.255977	938.497401	1.4934	0.0007023	-0.42672	-0.00020067	1.0667	0.00050164	470.256637754276	3.8381	0.23941	3.8381	3.7849	4.0243	0	729	31	0.835224628594324	0.0203948812138425	0.835224628594324	339.450932476332	0	8.28886171308699						448	28	4	NaN	NaN	NaN	0.0066737	1	3045	82.716	47.083	1	261620			10892	1018	9168	9406	10892	10892		
LAHGGQVNLDMEDHRDEDFVK	21	Unmodified	_LAHGGQVNLDMEDHRDEDFVK_			0	0	1	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	607.035482	2424.11282	0.66317	0.00040257	1.2926	0.00078463	1.9557	0.0011872	607.287210715991	7.4472	0.097551	7.4472	7.4117	7.5092	0	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	722.047725874199	0	13.0895086933936						262	12	5	NaN	NaN	NaN	0.0013313	1	36458	27.669	27.305	1	78653			10893	3309	9169	9407	10893	10893		
LAHGGQVNLDMEDHRDEDFVK	21	Unmodified	_LAHGGQVNLDMEDHRDEDFVK_			0	0	1	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.044884	2424.11282	2.33	0.0018851	-0.025621	-2.0729E-05	2.3044	0.0018644	809.379081183004	7.4472	0.070946	7.4472	7.4205	7.4915	0	429	37	1.03776581230406	0.0241471979634897	1.03776581230406	627.022175455881	0	14.5898317507831						190	9	4	NaN	NaN	NaN	0.063747	1	36459	10.645	10.581	1	37712			10894	3309	9169	9407	10894	10894		
LAHGLLEELK	10	Unmodified	_LAHGLLEELK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	374.888763	1121.64446	-1.622	-0.00060808	-1.3386	-0.00050183	-2.9606	-0.0011099	374.888115467926	9.0883	0.12415	9.0883	9.0351	9.1592	0	849	31	0.753417699604308	0.0205087467208043	0.753417699604308	458.215673489725	0	12.4730666614801						179	15	3	NaN	NaN	NaN	0.047275	1	7325	26.456	18.81	1	46873			10895	2420	9170	9408	10895	10895		
LAHPFSLAVFEDK	13	Unmodified	_LAHPFSLAVFEDK_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.390459	1472.76637	1.1785	0.00086899	-0.75837	-0.00055921	0.4201	0.00030978	737.391794740101	13.389	0.13306	13.389	13.336	13.469	0	405	37	1.05384839605172	0.0241138939536367	1.05384839605172	426.053888537662	0	9.74885792417854						326	16	4	NaN	NaN	NaN	0.0089044	1	17674	52.837	30.794	1	94576			10896	491	9171	9409	10896	10896		
LAILDQELEHK	11	Unmodified	_LAILDQELEHK_			0	0	0	Q12888	Q12888	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.910115	1307.70852	-2.0461	-0.00089394	-0.13506	-5.9007E-05	-2.1811	-0.00095295	436.910009777437	9.7356	0.12413	9.7356	9.7002	9.8243	0	828	28	0.767766820543916	0.0184385915537137	0.767766820543916	466.136406779226	0	11.1946734124678						201	15	3	NaN	NaN	NaN	0.013339	1	12600	49.16	35.165	1	62759			10897	1602	9172	9410	10897	10897		
LAILGIHNEVSK	12	Unmodified	_LAILGIHNEVSK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.379894	1292.74524	1.6291	0.0010546	-0.34161	-0.00022115	1.2875	0.00083349	647.379588841556	9.0528	0.11529	9.0528	9.0174	9.1326	0	456	28	1.01965166402748	0.0181266605748145	1.01965166402748	412.762560921547	0	7.33780672731234						244	14	4	NaN	NaN	NaN	0.00063019	1	12165	63.212	54.738	1	73844			10898	671	9173	9411	10898	10898		
LAISEDHVASVK	12	Unmodified	_LAISEDHVASVK_			0	0	0	Q9HC35	Q9HC35	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.845884	1267.67722	2.306	0.0014639	-1.5095	-0.00095828	0.7965	0.00050566	634.845337770769	5.6647	0.10648	5.6647	5.6292	5.7357	0	501	28	0.98941132619024	0.0181642753536437	0.98941132619024	400.604777230342	0	7.35457063101973						188	13	4	NaN	NaN	NaN	0.00050119	1	11446	92.445	64.348	1	75565			10899	2956	9174	9412	10899	10899		
LALADAGDTVEDANFVEAMADAGILR	26	Unmodified	_LALADAGDTVEDANFVEAMADAGILR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.433925	2647.27995	1.4032	0.0012396	2.0639	0.0018233	3.467	0.0030629	883.769812315304	20.004	0.026587	20.004	20.004	20.031	0	288	25	1.13199748998575	0.0159875748490237	1.13199748998575	683.628672833771	0	9.65511379005466						83	4	5	NaN	NaN	NaN	0.0085667	1	37424	40.324	40.019	1	26017			10900	3161	9175	9413	10900	10900		
LALASLGYEK	10	Unmodified	_LALASLGYEK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.802957	1063.59136	0.36943	0.00019683	0.15033	8.0098E-05	0.51976	0.00027693	532.80291746702	10.259	0.17734	10.259	10.161	10.339	0	618	34	0.910492137470517	0.0223178910428838	0.910492137470517	369.412296727372	0	9.05499679675148						276	21	4	NaN	NaN	NaN	0.00072042	1	5821	72.042	50.767	1	86003			10901	2370	9176	9414	10901	10901		
LALCSADSVAFPVLTHSTR	19	Unmodified	_LALCSADSVAFPVLTHSTR_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.35433	2044.04116	1.4926	0.0010185	-2.7758	-0.0018941	-1.2832	-0.0008756	682.350827434464	13.912	0.15964	13.912	13.815	13.974	0	477	46	1.0055473068722	0.0302528786941803	1.0055473068722	608.19884323531	0	18.2982597641994						286	19	3	NaN	NaN	NaN	0.020829	1	32424	61.067	57.814	1	70175			10902	1784	9177	9415	10902	10902		
LALDMEIHAYR	11	Unmodified	_LALDMEIHAYR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.564062	1330.67036	-1.731	-0.00076953	-0.46397	-0.00020626	-2.1949	-0.00097579	444.564015555931	10.72	0.23941	10.72	10.667	10.906	0	789	34	0.794378096728713	0.022498430910932	0.794378096728713	482.206102636369	0	13.6570742945586						533	28	5	NaN	NaN	NaN	0.00032713	1	13315	99.305	89.791	1	225560			10903	493	9178	9416	10903	10903		
LALDMEIHAYR	11	Unmodified	_LALDMEIHAYR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.342455	1330.67036	1.5153	0.0010097	0.32283	0.00021512	1.8381	0.0012248	666.342611480917	10.72	0.1951	10.72	10.676	10.871	0	456	46	1.01965166402748	0.030219453730939	1.01965166402748	412.638159404066	0	12.2293722509876						401	23	4	NaN	NaN	NaN	0.00081968	1	13316	72.365	67.837	1	90031			10904	493	9178	9416	10904	10904		
LALDMEISAYR	11	Unmodified	_LALDMEISAYR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.329013	1280.64347	0.71462	0.00045831	-0.30002	-0.00019241	0.41461	0.0002659	641.329072874102	13.363	0.13304	13.363	13.318	13.451	0	567	37	0.944945209309785	0.0242878309785073	0.944945209309785	382.559047383324	0	9.8328764362239						277	16	3	NaN	NaN	NaN	0.00034603	1	11776	87.895	74.621	1	85719			10905	784	9179	9417	10905	10905		
LALELPDVTK	10	Unmodified	_LALELPDVTK_			0	0	0	Q96TC7	Q96TC7	Q96TC7	RMDN3	Regulator of microtubule dynamics protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.823889	1097.63323	0.68147	0.00037469	-0.041968	-2.3075E-05	0.6395	0.00035161	549.824387461221	13.558	0.15076	13.558	13.469	13.62	0	615	34	0.912521036363781	0.0223209853619647	0.912521036363781	370.088656224433	0	9.05266086920284						227	18	3	NaN	NaN	NaN	0.036815	1	6654	49.16	28.926	1	57468			10906	2635	9180	9418	10906	10906		
LALETTVLVESYTLPDGR	18	Unmodified	_LALETTVLVESYTLPDGR_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.030588	1976.04662	0.71229	0.00070448	-2.1113	-0.0020881	-1.399	-0.0013837	989.529668673104	16.714	0.24828	16.714	16.652	16.901	0	195	34	1.19381749893585	0.0218969686057855	1.19381749893585	481.495240415953	0	8.83157280959716						400	29	4	NaN	NaN	NaN	1.3789E-06	1	31223	69.327	60.574	1	85092			10907	1331	9181	9419	10907	10907		
LALFNPDVCWDR	12	Unmodified	_LALFNPDVCWDR_			0	0	0	O00483	O00483	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.363918	1504.71328	1.0935	0.0008238	5.2448	0.0039513	6.3383	0.0047751	753.368897477666	15.704	0.36356	15.704	15.588	15.952	0	432	76	1.035754240522	0.0502754509302745	1.035754240522	418.65593141309	0	20.3215346970913						1353	42	5	NaN	NaN	NaN	0.023621	1	18649	44.57	25.246	1	661270			10908	84	9182	9420	10908	10908		
LALFQAIGK	9	Unmodified	_LALFQAIGK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.797478	959.580402	-1.3792	-0.00066311	-0.94337	-0.00045357	-2.3226	-0.0011167	480.797146718894	13.256	0.11526	13.256	13.212	13.327	0	753	25	0.81889964927511	0.0163340619501384	0.81889964927511	332.710612340732	0	6.63636351322492						184	14	3	NaN	NaN	NaN	0.0013983	1	3444	75.243	37.635	1	47918			10909	1298	9183	9421	10909	10909		
LALGDDSPALK	11	Unmodified	_LALGDDSPALK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.303321	1098.59209	0.74705	0.0004111	1.0078	0.00055461	1.7549	0.00096572	550.303548191227	8.4051	0.15962	8.4051	8.3697	8.5293	0	615	43	0.912521036363781	0.0284026223535851	0.912521036363781	370.084646518404	0	11.5190489150892						401	19	4	NaN	NaN	NaN	0.0074574	1	6675	61.48	42.224	1	109270			10910	736	9184	9422	10910	10910		
LALGIPLPELR	11	Unmodified	_LALGIPLPELR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.376623	1190.73869	0.17171	0.0001024	-0.40812	-0.00024339	-0.23641	-0.00014099	596.37632815314	17.459	0.17734	17.459	17.388	17.566	0	570	94	0.942920803299286	0.062826240481894	0.942920803299286	382.046845003377	0	25.4555492630408						1073	21	4	NaN	NaN	NaN	0.0020383	1	9196	67.881	57.179	1	415650			10911	867	9185	9423	10911	10911		
LALGQINIAK	10	Unmodified	_LALGQINIAK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.826766	1039.63898	0.54854	0.0002857	-1.2458	-0.00064884	-0.69725	-0.00036315	520.82608050506	11.172	0.17733	11.172	11.083	11.261	0	666	58	0.877991458330206	0.0386401075458892	0.877991458330206	356.33075801148	0	15.6819963119659						418	21	2	NaN	NaN	NaN	0.00075063	1	5229	90.308	70.821	1	214320			10912	2808	9186	9424	10912	10912		
LALGSFVEEYNNK	13	Unmodified	_LALGSFVEEYNNK_			0	0	0	P61962	P61962	P61962	DCAF7	DDB1- and CUL4-associated factor 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.375006	1482.73546	0.93747	0.00069596	3.3617	0.0024957	4.2992	0.0031916	742.377992720118	13.203	0.13302	13.203	13.159	13.292	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	418.712491982612	0	7.31976663810838						210	16	3	NaN	NaN	NaN	0.0042909	1	17993	71.896	51.713	1	46426			10913	1356	9187	9425	10913	10913		
LALIQLQISSIK	12	Unmodified	_LALIQLQISSIK_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.921395	1325.82824	0.42244	0.00028047	-0.24644	-0.00016361	0.17601	0.00011685	663.921227209526	15.978	0.088663	15.978	15.952	16.041	0	462	34	1.01562323939346	0.022160929987054	1.01562323939346	411.023344940715	0	8.96854189326712						203	11	3	NaN	NaN	NaN	0.00028168	1	13173	78.932	77.429	1	59528			10914	3001	9188	9426	10914	10914		
LALLEEAR	8	Unmodified	_LALLEEAR_			0	0	0	Q5TZA2	Q5TZA2	Q5TZA2	CROCC	Rootletin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.768917	913.523281	-0.6565	-0.00030053	-0.10465	-4.7905E-05	-0.76115	-0.00034843	457.768752083777	8.6712	0.22191	8.6712	8.6091	8.831	0	726	34	0.837263974740672	0.0224328108600214	0.837263974740672	340.413970712172	0	9.12071037268771						354	26	3	NaN	NaN	NaN	0.0063831	1	2574	78.178	0	1	94498			10915	2002	9189	9427	10915	10915		
LALLHEGTGPR	11	Unmodified	_LALLHEGTGPR_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.330205	1162.64586	1.2916	0.00075215	-0.39211	-0.00022834	0.89951	0.00052381	582.330014129705	5.9219	0.15967	5.9219	5.8864	6.0461	0	561	40	0.948993180460448	0.0263063536302146	0.948993180460448	384.613613911715	0	10.6615958332254						250	19	4	NaN	NaN	NaN	0.0032835	1	8422	81.099	55.845	1	96821			10916	3321	9190	9428	10916	10916		
LALNVMADNFVFDGSSLPADVHR	23	Unmodified	_LALNVMADNFVFDGSSLPADVHR_			0	0	0	Q96KA5	Q96KA5	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.081158	2487.22164	1.7279	0.0014343	-1.0211	-0.00084762	0.70673	0.00058664	830.414391754419	17.69	0.133	17.69	17.646	17.779	0	390	31	1.06389100039157	0.0200782861239661	1.06389100039157	642.714176772847	0	12.1296252458428						334	16	4	NaN	NaN	NaN	2.7395E-06	1	36764	107.43	101.32	1	80372			10917	2573	9191	9429	10917	10917		
LALPGHAESYNPPPEYLLSEEER	23	Unmodified	_LALPGHAESYNPPPEYLLSEEER_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.094009	2610.2602	1.3317	0.0011601	-0.86455	-0.0007531	0.4672	0.00040697	871.427243266127	13.017	0.19507	13.017	12.963	13.159	0	483	85	1.00151498427745	0.0564915970747152	1.00151498427745	604.873329266783	0	34.1185712990934						1262	23	5	NaN	NaN	NaN	1.6452E-06	1	37276	53.782	53.084	1	281120			10918	1723	9192	9430	10918	10918		
LALPQSDASLLSR	13	Unmodified	_LALPQSDASLLSR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.885541	1369.75653	0.97852	0.00067115	0.83103	0.00056999	1.8095	0.0012411	685.886429968561	12.112	0.20397	12.112	12.041	12.245	0	465	34	1.01360860968299	0.022160929987054	1.01360860968299	410.072293293639	0	8.96557437900327						317	24	4	NaN	NaN	NaN	0.0046967	1	14493	54.584	33.495	1	149450			10919	2900	9193	9431	10919	10919		
LALQLHPDRNPDDPQAQEK	19	Unmodified	_LALQLHPDRNPDDPQAQEK_			0	0	1	Q9UBS4	Q9UBS4	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	547.030362	2184.09234	0.22953	0.00012556	0.39277	0.00021486	0.6223	0.00034042	547.280881784545	6.4629	0.12413	6.4629	6.3831	6.5072	0	687	25	0.863749705078866	0.0162864625285778	0.863749705078866	696.274773576777	0	13.1286331477436						234	15	4	NaN	NaN	NaN	0.050541	1	34510	30.027	20.449	1	54909			10920	3187	9194	9432	10920	10920		
LALQLHPDRNPDDPQAQEK	19	Unmodified	_LALQLHPDRNPDDPQAQEK_			0	0	1	Q9UBS4	Q9UBS4	Q9UBS4	DNAJB11	DnaJ homolog subfamily B member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.038058	2184.09234	1.2588	0.00091774	0.26939	0.0001964	1.5282	0.0011141	729.372695405102	6.4629	0.14188	6.4629	6.4096	6.5515	0	597	55	0.924688525662974	0.0364771975402507	0.924688525662974	559.050120060091	0	22.0534602716217						446	17	4	NaN	NaN	NaN	2.4951E-10	1	34511	94.63	78.528	1	121540			10921	3187	9194	9432	10921	10921		
LALQQDLTSMAPGLVIQAVR	20	Unmodified	_LALQQDLTSMAPGLVIQAVR_			0	0	0	O94905	O94905	O94905	ERLIN2	Erlin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1062.59591	2123.17726	-0.46539	-0.00049453	0.57073	0.00060646	0.10534	0.00011193	1063.097927137	18.807	0.062081	18.807	18.781	18.843	0	84	46	1.26725910986255	0.0297083716264817	1.26725910986255	510.868868875387	0	11.9763054696814						267	8	4	NaN	NaN	NaN	3.1185E-07	1	33661	100.07	86.294	1	69157			10922	395	9195	9433	10922	10922		
LALTTAEFLAYQCEK	15	Unmodified	_LALTTAEFLAYQCEK_			0	0	0	P21281;P15313	P21281	P21281	ATP6V1B2;ATP6V1B1	V-type proton ATPase subunit B, brain isoform;V-type proton ATPase subunit B, kidney isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.442563	1756.87057	2.0447	0.0017982	0.71101	0.0006253	2.7557	0.0024235	879.443191739881	14.515	0.079787	14.515	14.489	14.568	0	165	40	1.21370334790578	0.025842737786582	1.21370334790578	489.941388629541	0	10.4320605681727						209	10	3	NaN	NaN	NaN	4.869E-06	1	26067	99.276	80.769	1	42709			10923	789	9196	9434	10923	10923		
LALVTGGEIASTFDHPELVK	20	Unmodified	_LALVTGGEIASTFDHPELVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.06496	2096.11537	0.50138	0.00052598	0.19076	0.00020011	0.69214	0.0007261	1049.56662178289	15.207	0.044327	15.207	15.189	15.234	0	57	16	1.28506705146927	0.00988788466386747	1.28506705146927	518.091231237202	0	3.98642727161769						57	6	3	NaN	NaN	NaN	0.059513	1	33262	18.396	16.295	1	8254.1			10924	1461	9197	9435	10924	10924		
LALVTGGEIASTFDHPELVK	20	Unmodified	_LALVTGGEIASTFDHPELVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.7124	2096.11537	1.334	0.00093343	1.1358	0.00079477	2.4699	0.0017282	700.047696870182	15.216	0.2926	15.216	15.154	15.446	0	474	82	1.00756305028564	0.0544552144211901	1.00756305028564	609.315981508924	0	32.931370809916						1295	34	6	NaN	NaN	NaN	5.0104E-11	1	33263	164.3	142.63	1	897110			10925	1461	9197	9435	10925	10925		
LAMDEIFQK	9	Unmodified	_LAMDEIFQK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.781167	1093.54778	0.028852	1.5805E-05	-0.82715	-0.0004531	-0.7983	-0.00043729	547.780990745494	12.361	0.41676	12.361	12.272	12.689	0	663	58	0.880024865079826	0.0386133059096635	0.880024865079826	356.925807883121	0	15.6610181754291						687	48	4	NaN	NaN	NaN	8.1876E-06	1	6543	121.67	91.11	1	420550			10926	2029	9198	9436	10926	10926		
LAMLEEDLLALK	12	Unmodified	_LAMLEEDLLALK_			0	0	0	Q6NVY1	Q6NVY1	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.883621	1357.75269	0.69055	0.00046949	-2.8098	-0.0019103	-2.1192	-0.0014408	679.882558129067	17.504	0.062054	17.504	17.459	17.521	0	477	34	1.0055473068722	0.0221762449945386	1.0055473068722	406.846907363347	0	8.97256313183743						192	8	3	NaN	NaN	NaN	0.034641	1	14134	50.297	31.041	1	75833			10927	2048	9199	9437	10927	10927		
LAMQEFMILPVGAANFR	17	Unmodified	_LAMQEFMILPVGAANFR_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.667192	1906.97975	1.073	0.00068312	0.92393	0.00058824	1.9969	0.0012714	637.002612676942	19.446	0.22168	19.446	19.41	19.632	0	540	61	0.963152256458504	0.0404349276895257	0.963152256458504	582.838562381056	0	24.4686496517185						967	26	7	NaN	NaN	NaN	0.0020353	1	29756	93.162	83.141	1	1418300			10928	544	9200	9438	10928	10928		
LAMQEFMILPVGAANFR	17	Unmodified	_LAMQEFMILPVGAANFR_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.497149	1906.97975	2.1766	0.0020776	0.18557	0.00017713	2.3622	0.0022547	954.998948335389	19.446	0.29266	19.446	19.366	19.658	0	228	379	1.17191150690002	0.251290117184461	1.17191150690002	472.779405144297	0	101.37693112629						2901	34	4	NaN	NaN	NaN	2.8224E-14	1	29757	172.92	156.79	1	4096200			10929	544	9200	9438	10929	10929		
LAMQEFMILPVGAANFR	17	Oxidation (M)	_LAM(Oxidation (M))QEFMILPVGAANFR_	LAM(1)QEFMILPVGAANFR	LAM(36)QEFM(-36)ILPVGAANFR	0	1	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.99883	1922.97466	0.76152	0.00048889	-1.438	-0.00092318	-0.67646	-0.00043429	642.332359723134	17.592	0.19505	17.592	17.539	17.734	0	537	37	0.965173861991602	0.0242575920930522	0.965173861991602	584.026862363288	0	14.6782729583668						680	23	6	NaN	NaN	NaN	0.002119	1	30126	101.45	100.83	2	389640			10930	544	9200	9439	10930	10930	114;115	
LAMQEFMILPVGAANFR	17	Oxidation (M)	_LAMQEFM(Oxidation (M))ILPVGAANFR_	LAM(0.041)QEFM(0.959)ILPVGAANFR	LAM(-14)QEFM(14)ILPVGAANFR	0	1	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.99883	1922.97466	0.43623	0.00028006	-0.32917	-0.00021133	0.10706	6.8731E-05	641.998817625072	18.036	0.2128	18.036	17.982	18.195	0	552	49	0.955063035883597	0.0323703311033066	0.955063035883597	577.908795231936	0	19.5872925098222						996	25	6	NaN	NaN	NaN	0.0024614	1	30127	59.731	53.526	2	652180			10931	544	9200	9439	10931	10931	114;115	
LAMQEFMILPVGAANFR	17	Oxidation (M)	_LAM(Oxidation (M))QEFMILPVGAANFR_	LAM(1)QEFMILPVGAANFR	LAM(70)QEFM(-70)ILPVGAANFR	0	1	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.494607	1922.97466	1.7039	0.00164	-0.92528	-0.00089058	0.77864	0.00074943	962.996351661918	17.592	0.23054	17.592	17.495	17.725	0	222	85	1.17589687683038	0.0558105649813527	1.17589687683038	474.35870632294	0	22.5140723862349						1898	27	6	NaN	NaN	NaN	8.8375E-15	1	30128	165.72	154.52	2	958240			10932	544	9200	9439	10932	10932	114;115	
LAMQEFMILPVGAANFR	17	Oxidation (M)	_LAMQEFM(Oxidation (M))ILPVGAANFR_	LAMQEFM(1)ILPVGAANFR	LAM(-79)QEFM(79)ILPVGAANFR	0	1	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.494607	1922.97466	1.6854	0.0016222	-0.1465	-0.000141	1.5389	0.0014812	962.996650094284	18.027	0.26597	18.027	17.938	18.204	0	261	97	1.14997238118939	0.0638273657275379	1.14997238118939	463.900720164923	0	25.7480626592183						2041	31	6	NaN	NaN	NaN	5.7226E-19	1	30129	163.09	144.99	2	1529500			10933	544	9200	9439	10933	10933	114;115	
LAMQEFMILPVGAANFR	17	2 Oxidation (M)	_LAM(Oxidation (M))QEFM(Oxidation (M))ILPVGAANFR_	LAM(1)QEFM(1)ILPVGAANFR	LAM(100)QEFM(100)ILPVGAANFR	0	2	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.330468	1938.96957	1.1769	0.00076185	-1.1432	-0.00074003	0.033708	2.182E-05	647.664091272476	16.085	0.20396	16.085	16.014	16.218	0	537	43	0.965173861991602	0.0283044424712918	0.965173861991602	583.992379337478	0	17.1260115462744						603	24	3	NaN	NaN	NaN	0.00088821	1	30487	101.45	97.462	1	552010			10934	544	9200	9440	10934	10934	114;115	
LAMQEFMILPVGAANFR	17	2 Oxidation (M)	_LAM(Oxidation (M))QEFM(Oxidation (M))ILPVGAANFR_	LAM(1)QEFM(1)ILPVGAANFR	LAM(140)QEFM(140)ILPVGAANFR	0	2	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.492064	1938.96957	2.4314	0.0023596	-0.55353	-0.00053719	1.8779	0.0018225	970.99401049625	16.103	0.3813	16.103	15.952	16.333	0	252	121	1.15595906938629	0.0796747056641118	1.15595906938629	466.288200798459	0	32.139005728801						2315	44	6	NaN	NaN	NaN	6.9138E-19	1	30488	137.4	126.43	1	1267300			10935	544	9200	9440	10935	10935	114;115	
LAMQEFMILPVGAESFR	17	Unmodified	_LAMQEFMILPVGAESFR_			0	0	0	P09104	P09104	P09104	ENO2	Gamma-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.994439	1937.97433	1.5531	0.0015065	1.7118	0.0016604	3.2649	0.0031669	969.994386735847	19.454	0.062056	19.454	19.419	19.481	0	201	40	1.18983705239708	0.0258817910416804	1.18983705239708	479.955570116306	0	10.4401772915164						129	8	2	NaN	NaN	NaN	0.0021667	1	30471	58.794	55.058	1	38902			10936	596	9201	9441	10936	10936		
LANIDEEMLQK	11	Unmodified	_LANIDEEMLQK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.331753	1302.64895	1.1815	0.00077074	0.31646	0.00020643	1.498	0.00097717	652.331388352776	9.4962	0.34586	9.4962	9.3011	9.647	0	516	91	0.979317271586824	0.0605937152748721	0.979317271586824	396.403029894763	0	24.526813755281						1061	40	4	NaN	NaN	NaN	0.015815	1	12426	46.033	15.44	1	418530			10937	1250	9202	9442	10937	10937		
LANQAADYFGDAFK	14	Unmodified	_LANQAADYFGDAFK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.864805	1529.71506	1.8223	0.0013957	0.64495	0.00049394	2.4673	0.0018896	765.865938914308	13.194	0.18622	13.194	13.141	13.327	0	405	67	1.05384839605172	0.0442210248347901	1.05384839605172	425.906218004658	0	17.8716497688261						898	22	4	NaN	NaN	NaN	7.8433E-05	1	19415	95.656	87.182	1	424170			10938	2370	9203	9443	10938	10938		
LAPDYDALDVANK	13	Unmodified	_LAPDYDALDVANK_			0	0	0	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.853906	1403.69326	2.0567	0.0014456	1.5058	0.0010584	3.5625	0.0025039	702.855201953037	10.188	0.43447	10.188	10.037	10.472	0	480	88	1.00353128488872	0.058424320139383	1.00353128488872	405.897250996003	0	23.6308237650165						1687	50	4	NaN	NaN	NaN	2.1081E-07	1	15575	159.93	124.6	1	2475700			10939	1395	9204	9444	10939	10939		
LAPEYEAAATR	11	Unmodified	_LAPEYEAAATR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.303852	1190.59315	1.4028	0.00083648	1.0065	0.00060021	2.4093	0.0014367	596.304478548398	5.2213	0.18623	5.2213	5.0883	5.2745	0	612	61	0.914549654013882	0.0405583153888894	0.914549654013882	370.552110268105	0	16.4331912327684						665	22	4	NaN	NaN	NaN	0.0078348	1	9180	44.57	4.1838	1	446580			10940	904	9205	9445	10940	10940		
LAPGTIVEVWK	11	Unmodified	_LAPGTIVEVWK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.852981	1211.69141	0.28418	0.00017246	-3.5847	-0.0021754	-3.3006	-0.002003	606.850762931779	13.371	0.079849	13.371	13.345	13.425	0	582	31	0.934820374997243	0.0202538779292779	0.934820374997243	378.689745561888	0	8.20471620518799						165	10	3	NaN	NaN	NaN	0.064592	1	9793	41.796	28.522	1	55664			10941	562	9206	9446	10941	10941		
LAPITSDPTEATAVGAVEASFK	22	Unmodified	_LAPITSDPTEATAVGAVEASFK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.710836	2174.11068	1.1123	0.00080723	-0.84941	-0.00061642	0.26292	0.00019081	726.044709362757	16.005	0.24832	16.005	15.916	16.165	0	456	70	1.01965166402748	0.0463237128819054	1.01965166402748	616.481008253839	0	28.0072991895091						1381	29	6	NaN	NaN	NaN	0.00051595	1	34365	89.923	81.555	1	805180			10942	699	9207	9447	10942	10942		
LAPITSDPTEATAVGAVEASFK	22	Unmodified	_LAPITSDPTEATAVGAVEASFK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.06262	2174.11068	1.1338	0.0012336	0.60496	0.00065823	1.7388	0.0018919	1088.56486984445	16.005	0.4877	16.005	15.916	16.404	0	102	136	1.25537494996371	0.0892230445636768	1.25537494996371	506.000961199215	0	35.9629179406883						4278	56	7	NaN	NaN	NaN	3.701E-30	1	34366	193.32	174.31	1	4128800			10943	699	9207	9447	10943	10943		
LAPPLVTLLSGEPEVQYVALR	21	Unmodified	_LAPPLVTLLSGEPEVQYVALR_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.14629	2264.27802	0.59067	0.00066932	0.17144	0.00019427	0.76211	0.00086358	1133.64837729785	20.004	0.079824	20.004	19.96	20.04	0	114	79	1.24744674793813	0.0514910115870786	1.24744674793813	502.678220465202	0	20.7491102264106						394	10	4	NaN	NaN	NaN	0.00038818	1	35320	34.338	33.395	1	95221			10944	1423	9208	9448	10944	10944		
LAPVPFFSLLQYE	13	Unmodified	_LAPVPFFSLLQYE_			0	0	0	P07741	P07741	P07741	APRT	Adenine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.41086	1522.80717	0.75987	0.00057934	-0.75476	-0.00057543	0.0051161	3.9006E-06	762.410409329057	20.244	0.053192	20.244	20.235	20.288	0	426	55	1.03977710643793	0.0361908186814239	1.03977710643793	420.236495165255	0	14.6268875374116						213	7	5	NaN	NaN	NaN	0.00030773	1	19208	107.08	93.083	1	92600			10945	564	9209	9449	10945	10945		
LAQAHPAGPPTLDPVNDLQLK	21	Unmodified	_LAQAHPAGPPTLDPVNDLQLK_			0	0	0	Q15477	Q15477	Q15477	SKIV2L	Helicase SKI2W	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.398815	2194.17462	0.13508	9.8931E-05	0.32133	0.00023534	0.45641	0.00033427	732.7332594326	12.165	0.070883	12.165	12.13	12.201	0	606	43	0.918606045818476	0.0283908138186021	0.918606045818476	555.35664698941	0	17.1640794651541						303	9	4	NaN	NaN	NaN	1.0626E-05	1	34615	61.503	61.381	1	77771			10946	1853	9210	9450	10946	10946		
LAQALHEMR	9	Unmodified	_LAQALHEMR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	356.858809	1067.5546	-0.011716	-4.181E-06	0.17975	6.4147E-05	0.16804	5.9966E-05	356.85894168167	3.8292	0.11525	3.8292	3.8026	3.9179	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	459.744880302663	0	9.98318546894814						188	14	3	NaN	NaN	NaN	0.011074	1	5898	37.722	31.492	1	54935			10947	784	9211	9451	10947	10947		
LAQALHEMR	9	Unmodified	_LAQALHEMR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.784576	1067.5546	2.9372	0.0015707	-0.6958	-0.0003721	2.2414	0.0011986	534.784395305095	3.8292	0.15066	3.8292	3.7938	3.9445	0	606	40	0.918606045818476	0.0263647247275708	0.918606045818476	372.686653552033	0	10.6964036163992						322	18	4	NaN	NaN	NaN	7.6428E-05	1	5899	93.467	67.244	1	128390			10948	784	9211	9451	10948	10948		
LAQDFLDSQNLSAYNTR	17	Unmodified	_LAQDFLDSQNLSAYNTR_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.476511	1954.93847	2.7577	0.0026983	0.54599	0.00053424	3.3037	0.0032326	978.978549148839	12.813	0.23943	12.813	12.742	12.981	0	219	73	1.17788915118882	0.0478179014947668	1.17788915118882	475.106723505346	0	19.2875590043008						1358	28	6	NaN	NaN	NaN	1.0883E-06	1	30791	115.24	102.02	1	594010			10949	3109	9212	9452	10949	10949		
LAQEGIYTLYPFINSR	16	Unmodified	_LAQEGIYTLYPFINSR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.999993	1883.97815	-0.40522	-0.00025489	-0.17836	-0.00011219	-0.58359	-0.00036708	629.334334381143	17.016	0.12414	17.016	16.98	17.105	0	597	34	0.924688525662974	0.0222993386334626	0.924688525662974	559.612054383463	0	13.4953320580219						398	15	5	NaN	NaN	NaN	0.00014196	1	29243	82.437	72.415	1	126070			10950	1581	9213	9453	10950	10950		
LAQEGIYTLYPFINSR	16	Unmodified	_LAQEGIYTLYPFINSR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.996351	1883.97815	0.93212	0.00087898	1.2724	0.0011999	2.2046	0.0020789	943.498974149451	17.025	0.16847	17.025	16.972	17.14	0	225	70	1.17390432875292	0.0458286343267644	1.17390432875292	473.62512100994	0	18.4900864125722						570	20	2	NaN	NaN	NaN	3.882E-05	1	29244	83.061	61.7	1	406980			10951	1581	9213	9453	10951	10951		
LAQENEVDFILLGGDLFHENK	21	Unmodified	_LAQENEVDFILLGGDLFHENK_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.072657	2400.19614	0.75324	0.0006034	0.5544	0.00044411	1.3076	0.0010475	801.407582988583	18.958	0.070927	18.958	18.922	18.993	0	390	25	1.06389100039157	0.0160648436588446	1.06389100039157	642.843609526177	0	9.70699261514983						132	9	4	NaN	NaN	NaN	0.00038292	1	36351	54.813	54.557	1	30375			10952	1157	9214	9454	10952	10952		
LAQFDYGR	8	Unmodified	_LAQFDYGR_			0	0	0	Q5T9A4;Q9NVI7;Q5T2N8	Q5T9A4;Q9NVI7	Q9NVI7	ATAD3B;ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.243067	968.47158	0.45509	0.00022083	0.91824	0.00044557	1.3733	0.0006664	485.243410152495	6.658	0.15963	6.658	6.6136	6.7732	0	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	351.71406514752	0	9.92149432233708						283	19	3	NaN	NaN	NaN	0.0008791	1	3593	89.123	48.92	1	103810			10953	3068;1996	9215	9455	10953	10953		
LAQFVEHWK	9	Unmodified	_LAQFVEHWK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.541586	1156.60293	-1.0475	-0.00040488	-1.2605	-0.00048723	-2.3079	-0.00089211	386.541028864182	7.864	0.15072	7.864	7.8197	7.9704	0	867	28	0.741107305531458	0.0184746054874579	0.741107305531458	450.563561371326	0	11.2318202522509						301	18	3	NaN	NaN	NaN	0.072186	1	8247	15.582	10.675	1	131770			10954	1703	9216	9456	10954	10954		
LAQFVEHWK	9	Unmodified	_LAQFVEHWK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.308741	1156.60293	1.2465	0.00072209	1.9626	0.0011369	3.2091	0.001859	579.309552453885	7.864	0.15958	7.864	7.8197	7.9793	0	573	34	0.940896116921038	0.0222715533643577	0.940896116921038	381.355333831352	0	9.02690054243271						339	19	4	NaN	NaN	NaN	0.040643	1	8249	50.834	27.259	1	107120			10955	1703	9216	9456	10955	10955		
LAQGHTTVDELAR	13	Unmodified	_LAQGHTTVDELAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.91604	1409.72629	-0.56832	-0.00026763	0.37674	0.00017741	-0.19158	-9.0219E-05	470.916326829474	4.7425	0.20394	4.7425	4.7071	4.911	0	807	34	0.782101955086014	0.0225140971696576	0.782101955086014	474.480845056438	0	13.6587151857548						403	24	4	NaN	NaN	NaN	1.2429E-05	1	15750	94.791	92.992	1	170860			10956	1816	9217	9457	10956	10956		
LAQGHTTVDELAR	13	Unmodified	_LAQGHTTVDELAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.870422	1409.72629	2.2957	0.0016205	-0.53171	-0.00037531	1.764	0.0012452	705.870519368118	4.7514	0.1064	4.7514	4.7159	4.8223	0	489	55	0.997481546940468	0.0362909172147328	0.997481546940468	403.433483608434	0	14.6779368502531						363	13	4	NaN	NaN	NaN	0.0039947	1	15752	55.578	39.291	1	98403			10957	1816	9217	9457	10957	10957		
LAQGLTHLGK	10	Unmodified	_LAQGLTHLGK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.308741	1036.60293	2.0049	0.0010412	0.75161	0.00039032	2.7565	0.0014315	519.309254729724	4.8312	0.17725	4.8312	4.7958	4.9731	0	615	46	0.912521036363781	0.0304334915876326	0.912521036363781	370.358671437472	0	12.3518330673373						305	21	4	NaN	NaN	NaN	0.0008619	1	5165	88.181	65.794	1	157500			10958	1642	9218	9458	10958	10958		
LAQLEEAK	8	Unmodified	_LAQLEEAK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.2531	900.491647	1.2478	0.00056307	0.3147	0.00014201	1.5625	0.00070508	451.253317537343	3.9002	0.17733	3.9002	3.8115	3.9888	0	750	34	0.820941264895493	0.0224577750816375	0.820941264895493	333.849033961572	0	9.13281721425636						327	21	3	NaN	NaN	NaN	0.040891	1	2334	33.396	16	1	164380			10959	830	9219	9459	10959	10959		
LAQLQVAYHQLFQEYDNHIK	20	Unmodified	_LAQLQVAYHQLFQEYDNHIK_			0	0	0	Q9Y6K9	Q9Y6K9	Q9Y6K9	IKBKG	NF-kappa-B essential modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	615.3183	2457.24409	-0.66033	-0.00040631	-0.39844	-0.00024517	-1.0588	-0.00065148	615.568677395109	14.675	0.070937	14.675	14.648	14.719	0	669	19	0.875957769340875	0.0122029813016217	0.875957769340875	705.620320225155	0	9.83000765006182						130	9	4	NaN	NaN	NaN	0.0014377	1	36609	53.363	53.214	1	26962			10960	3469	9220	9460	10960	10960		
LAQMFSDMVLK	11	Unmodified	_LAQMFSDMVLK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.830334	1281.64612	1.4927	0.00095808	-3.6438	-0.0023387	-2.1511	-0.0013806	641.828508889392	14.48	0.28371	14.48	14.347	14.631	0	540	52	0.963152256458504	0.0343673059090993	0.963152256458504	389.926890594609	0	13.9134146666728						805	33	5	NaN	NaN	NaN	0.00042407	1	11813	56.202	42.928	1	519450			10961	495	9221	9461	10961	10961		
LAQMFSDMVLK	11	Oxidation (M)	_LAQM(Oxidation (M))FSDMVLK_	LAQM(0.943)FSDM(0.057)VLK	LAQM(12)FSDM(-12)VLK	0	1	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.827792	1297.64103	0.90147	0.0005858	0.27691	0.00017994	1.1784	0.00076574	649.827413144479	11.669	0.26608	11.669	11.562	11.828	0	525	76	0.973257487423603	0.0504842709886018	0.973257487423603	393.966135770562	0	20.4355922410867						628	31	5	NaN	NaN	NaN	0.011167	1	12289	64.064	53.236	2	178460			10962	495	9221	9462	10962	10962	81	
LAQMISDHNDADFEEK	16	Unmodified	_LAQMISDHNDADFEEK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.612357	1861.81524	0.93813	0.00058315	0.81457	0.00050635	1.7527	0.0010895	621.613036155538	7.4294	0.15073	7.4294	7.394	7.5447	-8.8818E-16	663	58	0.880024865079826	0.0386186640056191	0.880024865079826	532.628352354188	0	23.3736524905656						585	18	4	NaN	NaN	NaN	1.8588E-06	1	28726	102.57	99.062	1	196310			10963	1729	9222	9463	10963	10963		
LAQMISDHNDADFEEK	16	Unmodified	_LAQMISDHNDADFEEK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.914898	1861.81524	2.3578	0.0021973	-0.42087	-0.00039222	1.9369	0.001805	932.416112238779	7.4294	0.12413	7.4294	7.394	7.5181	0	246	43	1.1599488233373	0.0279282839901285	1.1599488233373	468.035341180407	0	11.2689660637744						425	15	5	NaN	NaN	NaN	1.1227E-08	1	28727	83.061	82.322	1	117590			10964	1729	9222	9463	10964	10964		
LAQNILSYLDLK	12	Unmodified	_LAQNILSYLDLK_			0	0	0	Q9UL15	Q9UL15	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.90066	1389.78677	0.49212	0.00034247	0.57327	0.00039894	1.0654	0.00074141	695.901430551951	17.858	0.079793	17.858	17.823	17.903	0	480	25	1.00353128488872	0.0161292915341544	1.00353128488872	405.936873938128	0	6.52443454708776						165	10	3	NaN	NaN	NaN	0.00039642	1	15154	72.922	60.965	1	41662			10965	3272	9223	9464	10965	10965		
LAQPYVGVFLK	11	Unmodified	_LAQPYVGVFLK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.863349	1233.71214	1.4394	0.00088936	-0.78989	-0.00048805	0.64952	0.00040131	617.862852826893	13.832	0.15961	13.832	13.788	13.948	0	549	43	0.957085760909907	0.0283201170105575	0.957085760909907	387.631356466255	0	11.4699913220408						378	19	4	NaN	NaN	NaN	0.0071428	1	10444	42.075	23.672	1	154430			10966	990	9224	9465	10966	10966		
LAQQQAALLMQQEER	15	Unmodified	_LAQQQAALLMQQEER_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.95416	1755.89377	2.848	0.0025033	-1.3082	-0.0011499	1.5398	0.0013534	878.95344174992	9.6026	0.21281	9.6026	9.4962	9.709	0	315	58	1.11400032671325	0.0380254184095288	1.11400032671325	449.69576284344	0	15.3499681544668						729	25	4	NaN	NaN	NaN	3.5784E-06	1	26047	82.437	72.415	1	208250			10967	1667	9225	9466	10967	10967		
LAQQYYLVYQEPIPTAQLVQR	21	Unmodified	_LAQQYYLVYQEPIPTAQLVQR_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.11983	2520.33766	0.94897	0.0007982	-2.2838	-0.0019209	-1.3348	-0.0011227	841.452510018161	15.828	0.097545	15.828	15.792	15.89	0	516	76	0.979317271586824	0.0504424030257907	0.979317271586824	591.578603116644	0	30.4708669862345						614	12	6	NaN	NaN	NaN	8.5724E-06	1	36923	67.838	63.398	1	175700			10968	842	9226	9467	10968	10968		
LAQVSPELLLASVR	14	Unmodified	_LAQVSPELLLASVR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.445766	1494.87698	0.050491	3.779E-05	1.3976	0.001046	1.4481	0.0010838	748.446695805772	16.883	0.15078	16.883	16.812	16.963	0	399	28	1.0578662689527	0.0180791826829763	1.0578662689527	427.619357632536	0	7.30811512977857						278	18	3	NaN	NaN	NaN	0.006215	1	18399	37.504	36.13	1	62716			10969	209	9227	9468	10969	10969		
LAQVSPELLLASVR	14	Unmodified	_LAQVSPELLLASVR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.445766	1494.87698	0.40969	0.00030663	1.5632	0.00117	1.9729	0.0014766	748.447251922784	16.901	0.19508	16.901	16.785	16.98	0	309	46	1.11800162319566	0.0300076659427861	1.11800162319566	451.927761804198	0	12.1299442014478						463	23	3	NaN	NaN	NaN	0.00023868	1	18400	62.454	55.314	1	124870			10970	209	9227	9468	10970	10970		
LASAAYPDPSK	11	Unmodified	_LASAAYPDPSK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.287671	1118.56079	1.4024	0.00078575	0.46401	0.00025998	1.8664	0.0010457	560.789968513448	4.8489	0.25714	4.8489	4.6982	4.9553	0	663	61	0.880024865079826	0.0406371291236521	0.880024865079826	356.826468460989	0	16.4772654148479						456	30	2	NaN	NaN	NaN	0.00061095	1	7225	87.895	44.161	1	193380			10971	1251	9228	9469	10971	10971		
LASAFTEEQAVLYNQR	16	Unmodified	_LASAFTEEQAVLYNQR_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.465415	1838.91628	1.4809	0.0013631	0.018534	1.706E-05	1.4994	0.0013802	920.465701072252	11.988	0.14187	11.988	11.944	12.086	0	276	43	1.13998907770044	0.0279628687340265	1.13998907770044	460.024010683466	0	11.2839598877476						493	17	5	NaN	NaN	NaN	1.9335E-08	1	28193	121.69	83.107	1	125980			10972	3212	9229	9470	10972	10972		
LASALAPSIYEHEDIK	16	Unmodified	_LASALAPSIYEHEDIK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.959434	1755.90432	2.7143	0.0023857	-0.40734	-0.00035804	2.3069	0.0020277	878.958956173843	9.6824	0.11527	9.6824	9.6381	9.7534	0	213	49	1.18187287897418	0.0318742099074689	1.18187287897418	477.094291970465	0	12.8668690841954						455	14	5	NaN	NaN	NaN	1.7383E-08	1	26050	108.5	103.11	1	164610			10973	950	9230	9471	10973	10973		
LASALAPSIYEHEDIK	16	Unmodified	_LASALAPSIYEHEDIK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.308715	1755.90432	1.2211	0.00071596	1.5189	0.00089054	2.74	0.0016065	586.309977715127	9.6824	0.16846	9.6824	9.5849	9.7534	0	612	70	0.914549654013882	0.0466323745818807	0.914549654013882	553.770791872757	0	28.2364624881517						571	20	4	NaN	NaN	NaN	0.0013658	1	26051	59.67	47.5	1	212510			10974	950	9230	9471	10974	10974		
LASDAGIFFTR	11	Unmodified	_LASDAGIFFTR_			0	0	0	Q9NR46	Q9NR46	Q9NR46	SH3GLB2	Endophilin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.316763	1196.61897	0.083142	4.9828E-05	4.836	0.0028983	4.9192	0.0029481	599.319587000735	12.485	0.070947	12.485	12.431	12.502	0	612	19	0.914549654013882	0.012169175881382	0.914549654013882	370.530717096294	0	4.93035391354596						93	9	3	NaN	NaN	NaN	0.029126	1	9357	41.824	27.829	1	39399			10975	3014	9231	9472	10975	10975		
LASDESLWQTLDLTGK	16	Unmodified	_LASDESLWQTLDLTGK_			0	0	0	Q13309	Q13309	Q13309	SKP2	S-phase kinase-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.954349	1775.89414	1.3676	0.0012157	-0.46825	-0.00041625	0.89935	0.00079948	889.455315402858	17.167	0.10639	17.167	17.114	17.22	0	288	37	1.13199748998575	0.0239846644495882	1.13199748998575	456.92047373854	0	9.68119129213238						192	13	2	NaN	NaN	NaN	0.0041643	1	26571	38.14	25.558	1	58061			10976	1652	9232	9473	10976	10976		
LASEFFVDGLDSDESTLEHFK	21	Unmodified	_LASEFFVDGLDSDESTLEHFK_			0	0	0	Q9BV29	Q9BV29	Q9BV29	C15orf57	Uncharacterized protein C15orf57	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	796.041022	2385.10124	0.34413	0.00027394	2.1727	0.0017296	2.5169	0.0020035	796.37724641484	16.635	0.062081	16.635	16.608	16.67	0	453	25	1.02166545906632	0.0161114741282644	1.02166545906632	617.351797373688	0	9.73552293772718						101	8	3	NaN	NaN	NaN	0.0043704	1	36271	29.408	29.103	1	17947			10977	2753	9233	9474	10977	10977		
LASEILMQNWDAAMEDLTR	19	Unmodified	_LASEILMQNWDAAMEDLTR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1104.0272	2206.03984	0.72506	0.00080049	0.84662	0.00093469	1.5717	0.0017352	1104.02871116187	20.004	0.062077	20.004	19.969	20.031	0	141	70	1.2295923935727	0.0456340739966186	1.2295923935727	495.563303232965	0	18.3919261114107						259	8	5	NaN	NaN	NaN	4.3564E-07	1	34745	93.026	91.055	1	78673			10978	1304	9234	9475	10978	10978		
LASEPQDPAAVSLPTSSVPETR	22	Unmodified	_LASEPQDPAAVSLPTSSVPETR_			0	0	0	Q6NZ67;Q6P582	Q6NZ67	Q6NZ67	MZT2B;MZT2A	Mitotic-spindle organizing protein 2B;Mitotic-spindle organizing protein 2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.57388	2251.13321	1.7291	0.0019479	-1.3406	-0.0015103	0.38847	0.00043764	1127.0744377453	11.092	0.070958	11.092	11.057	11.128	0	138	16	1.23157729878518	0.00992316561359918	1.23157729878518	496.301057265955	0	3.99883758032274						51	9	2	NaN	NaN	NaN	6.6997E-06	1	35192	55.416	50.583	1	5339.2			10979	2052	9235	9476	10979	10979		
LASEYLTPEEMVTFK	15	Unmodified	_LASEYLTPEEMVTFK_			0	0	0	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.436946	1756.85934	2.076	0.0018257	2.2423	0.0019719	4.3183	0.0037977	879.439441880915	15.101	0.10638	15.101	15.047	15.154	0	273	31	1.14198628764525	0.0199734753997438	1.14198628764525	460.991040211542	0	8.06278788176468						302	13	4	NaN	NaN	NaN	0.0014462	1	26066	54.27	39.907	1	59884			10980	194	9236	9477	10980	10980		
LASEYNWGGPESSDK	15	Unmodified	_LASEYNWGGPESSDK_			0	0	0	Q96KG9	Q96KG9	Q96KG9	SCYL1	N-terminal kinase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.365367	1638.71618	2.11	0.0017309	0.44921	0.00036851	2.5592	0.0020994	820.366903848439	8.0502	0.11544	8.0502	7.9881	8.1036	0	414	43	1.04781950764076	0.028132878019673	1.04781950764076	423.216967977562	0	11.3629410877991						312	14	3	NaN	NaN	NaN	9.9813E-05	1	22718	90.156	86.173	1	76156			10981	2575	9237	9478	10981	10981		
LASGDWFTSR	10	Unmodified	_LASGDWFTSR_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.277638	1138.54072	0.21391	0.00012199	0.62433	0.00035604	0.83824	0.00047803	570.278003179598	10.268	0.16846	10.268	10.214	10.383	0	663	55	0.880024865079826	0.0365835629359025	0.880024865079826	356.750233157595	0	14.8304839158549						419	20	3	NaN	NaN	NaN	0.00056747	1	7753	102.55	94.899	1	115870			10982	906	9238	9479	10982	10982		
LASGEHIAAFCLTEPASGSDAASIR	25	Unmodified	_LASGEHIAAFCLTEPASGSDAASIR_			0	0	0	Q9H845	Q9H845	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	844.411343	2530.2122	0.53392	0.00045084	0.7031	0.0005937	1.237	0.0010445	844.746592468618	11.873	0.07094	11.873	11.846	11.917	0	498	43	0.991429299781895	0.0282574968538493	0.991429299781895	598.882319902715	0	17.0692103553928						308	9	5	NaN	NaN	NaN	3.6803E-06	1	36961	97.933	88.06	1	64399			10983	2922	9239	9480	10983	10983		
LASGVEGSDIPDDGK	15	Unmodified	_LASGVEGSDIPDDGK_			0	0	0	O95747	O95747	O95747	OXSR1	Serine/threonine-protein kinase OSR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.349185	1458.68382	2.1657	0.0015817	-1.0043	-0.00073352	1.1613	0.00084817	730.349070570898	6.0638	0.22167	6.0638	6.0017	6.2234	0	492	49	0.995464410099171	0.032276430046501	0.995464410099171	402.486348547396	0	13.050011976086						691	26	4	NaN	NaN	NaN	2.9994E-05	1	17226	86.838	70.959	1	237720			10984	449	9240	9481	10984	10984		
LASHLNLAMCHLK	13	Unmodified	_LASHLNLAMCHLK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.397238	1506.77992	2.487	0.0018762	-0.40641	-0.00030659	2.0806	0.0015696	754.396751487972	7.4028	0.070926	7.4028	7.3762	7.4472	0	333	25	1.10198982404297	0.0160206216424124	1.10198982404297	445.423069131761	0	6.47551756438338						139	9	4	NaN	NaN	NaN	3.7106E-05	1	18708	73.655	61.636	1	26513			10985	1530	9241	9482	10985	10985		
LASHLNLAMCHLK	13	Unmodified	_LASHLNLAMCHLK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.267251	1506.77992	0.15643	7.8726E-05	2.8131	0.0014157	2.9695	0.0014944	503.269997025901	7.4028	0.22173	7.4028	7.3053	7.527	0	714	61	0.845418525735192	0.0407274835895337	0.845418525735192	512.572719017637	0	24.6928549194963						471	26	5	NaN	NaN	NaN	0.0014161	1	18709	71.066	65.038	1	131090			10986	1530	9241	9482	10986	10986		
LASLEELK	8	Unmodified	_LASLEELK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.7633	901.512048	-0.29375	-0.00013271	-4.8651	-0.0021979	-5.1589	-0.0023306	451.763028204417	8.068	0.11535	8.068	8.0237	8.139	0	741	37	0.827064408645228	0.024487471345556	0.827064408645228	336.333417830894	0	9.95805749298023						332	14	5	NaN	NaN	NaN	0.014657	1	2354	62.88	11.45	1	99157			10987	718	9242	9483	10987	10987		
LASLFPALFSR	11	Unmodified	_LASLFPALFSR_			0	0	0	Q9UNW1	Q9UNW1	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.353148	1220.69174	-0.13096	-8.0063E-05	-1.028	-0.00062844	-1.1589	-0.00070851	611.352556998772	18.293	0.133	18.293	18.24	18.373	0	597	34	0.924688525662974	0.0222962488144068	0.924688525662974	374.554283358837	0	9.03131731875112						219	16	3	NaN	NaN	NaN	0.0028184	1	10046	57.888	49.705	1	51089			10988	3307	9243	9484	10988	10988		
LASQANIAQVLAELK	15	Unmodified	_LASQANIAQVLAELK_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.638395	1567.89336	-2.0101	-0.0010526	0.38994	0.00020419	-1.6202	-0.00084837	523.638233976533	17.282	0.070943	17.282	17.255	17.326	0	726	22	0.837263974740672	0.0142734399244295	0.837263974740672	507.448766608272	0	8.65084334621281						115	9	3	NaN	NaN	NaN	0.0011097	1	20604	71.219	62.845	1	25587			10989	1423;1587	9244	9485	10989	10989		
LASQANIAQVLAELK	15	Unmodified	_LASQANIAQVLAELK_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.953955	1567.89336	1.1104	0.00087164	0.58989	0.00046304	1.7003	0.0013347	784.954292145157	17.282	0.20396	17.282	17.229	17.433	0	303	64	1.12200181823275	0.042004960473522	1.12200181823275	453.350958271212	0	16.9723335322307						905	24	5	NaN	NaN	NaN	3.8906E-24	1	20605	209.7	174.37	1	565990			10990	1423;1587	9244	9485	10990	10990		
LASTIADNQEQDLEK	15	Unmodified	_LASTIADNQEQDLEK_			0	0	0	Q96R06	Q96R06	Q96R06	SPAG5	Sperm-associated antigen 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.912681	1673.81081	2.6521	0.0022222	-1.5083	-0.0012638	1.1438	0.00095838	837.911938038878	6.7289	0.088661	6.7289	6.6934	6.7821	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	436.925647063253	0	11.3390312025696						268	11	4	NaN	NaN	NaN	7.7991E-05	1	23735	73.891	63.87	1	59254			10991	2608	9245	9486	10991	10991		
LASTLVHLGEYQAAVDGAR	19	Unmodified	_LASTLVHLGEYQAAVDGAR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	986.018346	1970.02214	1.417	0.0013972	-0.10088	-9.9468E-05	1.3161	0.0012977	986.519614039382	11.607	0.15966	11.607	11.545	11.704	0	144	82	1.22760721615852	0.0536218934934785	1.22760721615852	495.133998071182	0	21.6274571867169						865	19	5	NaN	NaN	NaN	1.936E-07	1	31115	86.135	83.588	1	330990			10992	1503	9246	9487	10992	10992		
LASTLVHLGEYQAAVDGAR	19	Unmodified	_LASTLVHLGEYQAAVDGAR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.681323	1970.02214	0.93198	0.00061295	2.6986	0.0017748	3.6306	0.0023877	658.017231978687	11.598	0.21286	11.598	11.527	11.74	0	531	55	0.969216233931596	0.0363813613911358	0.969216233931596	586.372633009145	0	22.0106039545384						725	25	6	NaN	NaN	NaN	1.044E-19	1	31116	242.43	225.67	1	498750			10993	1503	9246	9487	10993	10993		
LASTNSSVLGADLPSSMK	18	Unmodified	_LASTNSSVLGADLPSSMK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.453659	1776.89276	2.3811	0.0021179	-1.7446	-0.0015518	0.63648	0.00056612	889.452458781848	11.465	0.14188	11.465	11.412	11.553	0	315	46	1.11400032671325	0.0300117972178613	1.11400032671325	449.65412940995	0	12.1139358996787						436	17	5	NaN	NaN	NaN	1.4826E-07	1	26602	93.026	77.41	1	183490			10994	1666	9247	9488	10994	10994		
LASVLGSEPSLDSEVTSK	18	Unmodified	_LASVLGSEPSLDSEVTSK_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.970196	1817.92584	1.642	0.0014942	-1.3137	-0.0011954	0.32829	0.00029874	909.969503688335	11.722	0.25716	11.722	11.66	11.917	0	282	52	1.13599383354359	0.0339759429120787	1.13599383354359	458.451422060505	0	13.7116231479009						905	30	4	NaN	NaN	NaN	8.8095E-05	1	27666	70.598	68.209	1	280150			10995	3109	9248	9489	10995	10995		
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	33	Unmodified	_LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK_			0	0	0	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	925.482155	2773.42464	2.4832	0.0022981	-0.29071	-0.00026904	2.1925	0.0020291	925.816276729548	9.9307	0.16846	9.9307	9.8864	10.055	0	213	187	1.18187287897418	0.123326657779686	1.18187287897418	713.579497179382	0	74.4609475459201						2154	20	6	NaN	NaN	NaN	1.7775E-15	1	37826	175.01	174.53	1	876970			10996	529	9249	9490	10996	10996		
LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK	33	Unmodified	_LASVPAGGAVAVSAAPGSAAPAAGSAPAAAEEK_			0	0	0	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	694.363436	2773.42464	1.8089	0.001256	1.3791	0.00095758	3.188	0.0022136	694.615266562882	9.9396	0.097516	9.9396	9.9041	10.002	0	387	61	1.06589869032374	0.0401399775748084	1.06589869032374	858.07543941405	0	32.3136984858409						611	12	5	NaN	NaN	NaN	0.051916	1	37827	26.019	26.019	1	153930			10997	529	9249	9490	10997	10997		
LATALQK	7	Unmodified	_LATALQK_			0	0	0	CON__Q3SX28;P07951;P06753;P09493;P67936	CON__Q3SX28;P06753;P09493;P67936	P67936	TPM2;TPM3;TPM1;TPM4	Tropomyosin beta chain;Tropomyosin alpha-3 chain;Tropomyosin alpha-1 chain;Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	372.734346	743.454139	0.082151	3.062E-05	-1.0643	-0.00039669	-0.98211	-0.00036606	372.733883837339	3.1996	0.24828	3.1996	3.1641	3.4124	0	885	25	0.728786607772777	0.0164344731641031	0.728786607772777	297.311147501732	0	6.70450310542657						224	29	2	NaN	NaN	NaN	0.016696	1	573	58.687	35.378	1	46411		+	10998	1443;41;548;602	9250	9491	10998	10998		
LATDLLSLMPSLTSGEVAHCAK	22	Unmodified	_LATDLLSLMPSLTSGEVAHCAK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.064228	2313.17085	1.6933	0.0013073	-1.2185	-0.00094079	0.47473	0.00036652	772.397276141646	17.823	0.2394	17.823	17.699	17.938	0	414	76	1.04781950764076	0.0502685125885778	1.04781950764076	633.269639801017	0	30.3807312501531						1028	28	5	NaN	NaN	NaN	0.00078693	1	35750	46.823	38.07	1	341090			10999	2466	9251	9492	10999	10999		
LATELYHQK	9	Unmodified	_LATELYHQK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.798206	1101.58186	2.3246	0.0012827	-0.32655	-0.00018019	1.9981	0.0011025	551.798176382649	3.9534	0.23056	3.9534	3.9002	4.1307	4.4409E-16	609	31	0.916577990479294	0.0202875850561227	0.916577990479294	371.717504322146	0	8.22761463194388						283	27	3	NaN	NaN	NaN	0.0033576	1	6763	77.072	54.685	1	79569			11000	1558	9252	9493	11000	11000		
LATFWYYAK	9	Unmodified	_LATFWYYAK_			0	0	0	O75964	O75964	O75964	ATP5L	ATP synthase subunit g, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.800217	1161.58588	0.6793	0.00039521	0.38418	0.00022352	1.0635	0.00061873	581.800216434715	13.336	0.17737	13.336	13.283	13.46	0	576	40	0.938871150116794	0.0263282200540531	0.938871150116794	380.515364354722	0	10.670572043281						518	21	4	NaN	NaN	NaN	0.0094958	1	8379	39.324	27.964	1	246390			11001	375	9253	9494	11001	11001		
LATGSDDNCAAFFEGPPFK	19	Unmodified	_LATGSDDNCAAFFEGPPFK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.45947	2042.90439	1.2505	0.0012786	0.62983	0.00064398	1.8804	0.0019226	1022.96195186973	14.737	0.33697	14.737	14.551	14.888	0	210	52	1.18386433251387	0.0338593720213791	1.18386433251387	477.371869578135	0	13.6531790684707						721	39	4	NaN	NaN	NaN	6.4104E-05	1	32392	56.473	55.797	1	139010			11002	300	9254	9495	11002	11002		
LATLGGSQALGLDGEIGNFEVGK	23	Unmodified	_LATLGGSQALGLDGEIGNFEVGK_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1123.58679	2245.15903	0.64711	0.00072708	-2.9763	-0.0033441	-2.3292	-0.002617	1124.0846146765	16.395	0.13301	16.395	16.351	16.484	0	96	91	1.2593374219024	0.0594371415479429	1.2593374219024	507.496121710523	0	23.9523723320899						945	16	4	NaN	NaN	NaN	1.4634E-06	1	35150	80.175	37.68	1	203660			11003	3353	9255	9496	11003	11003		
LATMMVQGQEYEAGGSVIHPLNLHMK	26	Unmodified	_LATMMVQGQEYEAGGSVIHPLNLHMK_			0	0	0	Q9UHG3	Q9UHG3	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	714.35667	2853.39758	0.55287	0.00039495	-0.34741	-0.00024817	0.20546	0.00014677	714.607246169234	13.061	0.062054	13.061	13.026	13.088	0	558	37	0.951016745717027	0.0242844683109597	0.951016745717027	765.485585274281	0	19.5468802434957						258	8	5	NaN	NaN	NaN	7.4443E-10	1	38007	82.747	81.321	1	49614			11004	3217	9256	9497	11004	11004		
LATPELLETAQALER	15	Unmodified	_LATPELLETAQALER_			0	0	0	Q8N6R0	Q8N6R0	Q8N6R0	METTL13	Methyltransferase-like protein 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.954152	1653.89375	2.5558	0.0021161	-1.8492	-0.0015311	0.70657	0.00058501	827.952694619314	15.553	0.11528	15.553	15.5	15.615	0	324	43	1.1079963157843	0.0280206529000475	1.1079963157843	447.488112103563	0	11.3167425627005						350	14	3	NaN	NaN	NaN	4.6889E-05	1	23166	65.408	47.993	1	77646			11005	2265	9257	9498	11005	11005		
LATPTYGDLNHLVSATMSGVTTSLR	25	Unmodified	_LATPTYGDLNHLVSATMSGVTTSLR_			0	0	0	Q13509	Q13509	Q13509	TUBB3	Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	869.114527	2604.32175	0.8282	0.0007198	0.16641	0.00014463	0.99461	0.00086443	869.448883215169	19.064	0.10642	19.064	19.011	19.117	0	429	40	1.03776581230406	0.0261540485744427	1.03776581230406	626.77488584645	0	15.7961465056105						429	13	5	NaN	NaN	NaN	0.026058	1	37257	22.225	21.413	1	128500			11006	1675	9258	9499	11006	11006		
LATQLTGPVMPVR	13	Oxidation (M)	_LATQLTGPVM(Oxidation (M))PVR_	LATQLTGPVM(1)PVR	LATQLTGPVM(57)PVR	0	1	0	P26373	P26373	P26373	RPL13	60S ribosomal protein L13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.892312	1397.77007	1.4444	0.0010109	-2.8667	-0.0020064	-1.4223	-0.00099545	699.890136122244	8.769	0.20417	8.769	8.7068	8.9109	0	489	61	0.997481546940468	0.0403176730241901	0.997481546940468	403.467015187945	0	16.3079219302734						553	24	3	NaN	NaN	NaN	0.021829	1	15386	57.293	39.562	1	196910			11007	851	9259	9500	11007	11007	286	
LATTALYFTYSALEEEMER	19	Unmodified	_LATTALYFTYSALEEEMER_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.53538	2237.0562	0.81962	0.00091759	0.7828	0.00087638	1.6024	0.001794	1120.03814662758	19.641	0.070945	19.641	19.614	19.685	0	108	70	1.25141139212444	0.0455965602890394	1.25141139212444	504.313261145326	0	18.3752123091494						352	9	4	NaN	NaN	NaN	2.1562E-14	1	35064	105.78	101.93	1	62026			11008	910	9260	9501	11008	11008		
LATTILQHWK	10	Unmodified	_LATTILQHWK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.850773	1209.68699	0.62313	0.00037752	0.91969	0.0005572	1.5428	0.00093472	605.851581423202	9.4164	0.15072	9.4164	9.3632	9.514	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	399.176342725266	0	8.99604952260967						365	18	4	NaN	NaN	NaN	3.18E-05	1	9733	118.06	112.19	1	190740			11009	1465	9261	9502	11009	11009		
LATYGITVAELTGDHQLCK	19	Unmodified	_LATYGITVAELTGDHQLCK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.53297	2089.05139	0.32314	0.00033786	-2.1297	-0.0022267	-1.8066	-0.0018888	1046.03169545909	13.425	0.070932	13.425	13.398	13.469	0	54	22	1.28704435770646	0.0138430389183961	1.28704435770646	518.89996317901	0	5.58112262567374						120	9	3	NaN	NaN	NaN	6.1627E-09	1	33173	99.668	65.33	1	20147			11010	350	9262	9503	11010	11010		
LAVDEEENADNNTK	14	Unmodified	_LAVDEEENADNNTK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.352456	1560.69036	3.3596	0.002625	-2.048	-0.0016002	1.3116	0.0010248	781.351093249724	4.0332	0.3281	4.0332	3.9711	4.2992	0	474	58	1.00756305028564	0.0382991413096786	1.00756305028564	407.127807255055	0	15.4756026600425						1004	38	5	NaN	NaN	NaN	1.7736E-43	1	20351	278.37	263.91	1	639330			11011	495	9263	9504	11011	11011		
LAVEALSSLDGDLAGR	16	Unmodified	_LAVEALSSLDGDLAGR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.922852	1585.83115	2.1195	0.0016827	0.47735	0.00037898	2.5968	0.0020617	793.92359966557	15.056	0.29267	15.056	14.967	15.26	0	354	52	1.08796502040166	0.0340790239869053	1.08796502040166	439.554671798779	0	13.7684520392546						1093	34	5	NaN	NaN	NaN	5.3344E-12	1	21144	179.98	135.41	1	660340			11012	668	9264	9505	11012	11012		
LAVEAVLR	8	Unmodified	_LAVEAVLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.774003	869.533452	-3.0012	-0.0013079	-0.31807	-0.00013861	-3.3193	-0.0014465	435.773920229721	9.576	0.097536	9.576	9.5317	9.6292	0	795	28	0.790287188799094	0.0184103687161689	0.790287188799094	321.554853028553	0	7.49087608989964						191	12	3	NaN	NaN	NaN	0.015747	1	1859	67.903	16.473	1	50839			11013	1461	9265	9506	11013	11013		
LAVHPSGVALQDR	13	Unmodified	_LAVHPSGVALQDR_			0	0	0	P05161	P05161	P05161	ISG15	Ubiquitin-like protein ISG15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.921126	1361.74155	-0.73281	-0.00033337	-0.22182	-0.00010091	-0.95463	-0.00043428	454.921065154231	6.1436	0.10642	6.1436	6.1081	6.2146	0	855	37	0.749315378969369	0.0246104973797818	0.749315378969369	454.745446262826	0	14.935649164324						208	13	3	NaN	NaN	NaN	0.0025367	1	14265	64.906	61.298	1	50267			11014	526	9266	9507	11014	11014		
LAVHPSGVALQDR	13	Unmodified	_LAVHPSGVALQDR_			0	0	0	P05161	P05161	P05161	ISG15	Ubiquitin-like protein ISG15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.87805	1361.74155	2.25	0.0015342	-1.2957	-0.00088354	0.95425	0.00065069	681.877148405819	6.1436	0.097521	6.1436	6.0993	6.1968	0	471	37	1.00957851518677	0.0241839121258494	1.00957851518677	408.465879140189	0	9.78458116821821						295	12	4	NaN	NaN	NaN	0.0043847	1	14266	42.061	35.37	1	105640			11015	526	9266	9507	11015	11015		
LAVLPPELAHTTELHVLDVAGNR	23	Unmodified	_LAVLPPELAHTTELHVLDVAGNR_			0	0	0	Q14160	Q14160	Q14160	SCRIB	Protein scribble homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	617.093228	2464.34381	0.43788	0.00027021	-0.25198	-0.00015549	0.1859	0.00011472	617.343577617967	15.331	0.13295	15.331	15.26	15.393	0	573	43	0.940896116921038	0.0283515051757137	0.940896116921038	757.918585788561	0	22.8379438721365						279	16	4	NaN	NaN	NaN	0.066901	1	36649	6.0477	4.9529	1	57832			11016	1730	9267	9508	11016	11016		
LAVLPPELAHTTELHVLDVAGNR	23	Unmodified	_LAVLPPELAHTTELHVLDVAGNR_			0	0	0	Q14160	Q14160	Q14160	SCRIB	Protein scribble homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.455212	2464.34381	1.1667	0.00095958	1.2989	0.0010683	2.4656	0.0020278	822.791063865976	15.331	0.097534	15.331	15.296	15.393	0	369	28	1.07793901817685	0.0180542692060639	1.07793901817685	651.234391691008	0	10.9074454357564						187	12	3	NaN	NaN	NaN	0.012859	1	36650	38.616	38.402	1	38208			11017	1730	9267	9508	11017	11017		
LAVLPYELR	9	Unmodified	_LAVLPYELR_			0	0	0	Q9ULX3	Q9ULX3	Q9ULX3	NOB1	RNA-binding protein NOB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.321317	1072.62808	0.87622	0.00047081	-2.0588	-0.0011062	-1.1826	-0.00063543	537.320274762505	12.768	0.10643	12.768	12.733	12.839	-1.7764E-15	642	46	0.894250814548268	0.0304588219189615	0.894250814548268	362.783666723688	0	12.3566709921607						325	13	3	NaN	NaN	NaN	0.0069061	1	6029	42.075	33.892	1	101480			11018	3282	9268	9509	11018	11018		
LAVLSSSLTHWK	12	Unmodified	_LAVLSSSLTHWK_			0	0	0	Q6IAA8	Q6IAA8	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.922355	1340.74524	-0.90136	-0.00040374	0.11516	5.1581E-05	-0.7862	-0.00035216	447.922316063038	11.243	0.088681	11.243	11.208	11.296	0	762	25	0.812773098473386	0.0163386061083168	0.812773098473386	493.334245956846	0	9.91715146523921						188	11	3	NaN	NaN	NaN	0.052129	1	13638	23.836	19.633	1	63288			11019	2036	9269	9510	11019	11019		
LAVNMVPFPR	10	Unmodified	_LAVNMVPFPR_			0	0	0	P04350;P07437;A6NNZ2;CON__ENSEMBL:ENSBTAP00000025008;P68371;Q3ZCM7;Q9BVA1;Q13885;Q13509;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q13509;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.320794	1142.62703	0.97087	0.00055565	-0.91846	-0.00052565	0.052411	2.9996E-05	572.320328874223	13.442	0.46113	13.442	13.327	13.788	0	639	136	0.896281965493857	0.0913386559758579	0.896281965493857	363.325101784863	0	37.0258777448854						3802	53	7	NaN	NaN	NaN	2.4188E-05	1	7863	113.14	103.74	1	9281100			11020	1449;560;512;2761;2745;1675;1936	9270	9511	11020	11020		
LAVNNIAGIEEVNMIK	16	Oxidation (M)	_LAVNNIAGIEEVNM(Oxidation (M))IK_	LAVNNIAGIEEVNM(1)IK	LAVNNIAGIEEVNM(120)IK	0	1	0	Q96K17	Q96K17	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.469112	1742.92367	1.9809	0.0017283	-2.5336	-0.0022105	-0.55268	-0.0004822	872.466622589075	13.318	0.1153	13.318	13.247	13.363	0	318	34	1.11199926528787	0.0220116788084446	1.11199926528787	448.914153211929	0	8.88611572104583						358	14	4	NaN	NaN	NaN	4.2387E-08	1	25690	117.21	100.45	1	106840			11021	2571	9271	9512	11021	11021	608	
LAVVDPLFGMQPIR	14	Unmodified	_LAVVDPLFGMQPIR_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.436886	1554.85922	1.3728	0.0010686	-0.97533	-0.00075923	0.39742	0.00030937	778.436508225578	17.557	0.24829	17.557	17.486	17.734	0	393	67	1.0618830335572	0.0441722496359709	1.0618830335572	429.09112665882	0	17.8493485293383						1235	29	5	NaN	NaN	NaN	6.9346E-08	1	20214	108.4	88.218	1	793590			11022	581	9272	9513	11022	11022		
LAVVDPLFGMQPIR	14	Unmodified	_LAVVDPLFGMQPIR_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.293683	1554.85922	-1.1178	-0.00058048	6.6982	0.0034783	5.5804	0.0028978	519.297076425066	17.566	0.10642	17.566	17.521	17.628	0	729	37	0.835224628594324	0.024467056718703	0.835224628594324	506.249831752348	0	14.8300743575591						233	13	3	NaN	NaN	NaN	0.0034178	1	20217	60.547	9.0939	1	55537			11023	581	9272	9513	11023	11023		
LAVVDPLFGMQPIR	14	Oxidation (M)	_LAVVDPLFGM(Oxidation (M))QPIR_	LAVVDPLFGM(1)QPIR	LAVVDPLFGM(81)QPIR	0	1	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.434344	1570.85413	1.4234	0.0011194	-0.74125	-0.00058295	0.68211	0.00053643	786.434011665349	15.242	0.17732	15.242	15.18	15.358	0	381	46	1.06991323971056	0.0301112043248537	1.06991323971056	432.297155630408	0	12.1663958338918						512	21	4	NaN	NaN	NaN	0.00040993	1	20694	81.335	75.308	1	160230			11024	581	9272	9514	11024	11024	154	
LAVYIDR	7	Unmodified	_LAVYIDR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.245078	848.475603	-1.3652	-0.00058056	-0.36966	-0.0001572	-1.7349	-0.00073776	425.244820063006	7.3142	0.1596	7.3142	7.261	7.4205	0	795	34	0.790287188799094	0.0225015628542545	0.790287188799094	321.678796076489	0	9.15904465033168						315	19	3	NaN	NaN	NaN	0.02927	1	1535	38.322	22.824	1	124250			11025	493	9273	9515	11025	11025		
LAWEQQEPGER	11	Unmodified	_LAWEQQEPGER_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.822941	1341.63133	1.3533	0.00090918	0.38022	0.00025544	1.7335	0.0011646	671.823072940033	6.658	0.15963	6.658	6.6047	6.7644	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	382.373433387236	0	7.37260985143854						245	19	3	NaN	NaN	NaN	0.00054833	1	13657	76.85	64.254	1	73358			11026	1723	9274	9516	11026	11026		
LAWVSHDSTVSVADASK	17	Unmodified	_LAWVSHDSTVSVADASK_			0	0	0	Q92747	Q92747	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.631969	1771.87408	0.48948	0.00028959	1.9965	0.0011812	2.486	0.0014708	591.63317794564	8.4584	0.044342	8.4584	8.4406	8.485	0	612	19	0.914549654013882	0.0121708628142703	0.914549654013882	553.73173305483	0	7.36908371168238						35	6	2	NaN	NaN	NaN	0.058365	1	26466	10.758	10.468	1	5351.9			11027	2430	9275	9517	11027	11027		
LAYELYTEALGIDPNNIK	18	Unmodified	_LAYELYTEALGIDPNNIK_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.689484	2036.04662	-0.043774	-2.9752E-05	0.048442	3.2926E-05	0.0046688	3.1734E-06	680.023799697997	17.344	0.097526	17.344	17.282	17.38	0	519	31	0.97729762293174	0.0201978857694813	0.97729762293174	591.127834974949	0	12.2168848115768						262	12	4	NaN	NaN	NaN	0.046651	1	32265	20.966	12.214	1	56788			11028	2658	9276	9518	11028	11028		
LAYELYTEALGIDPNNIK	18	Unmodified	_LAYELYTEALGIDPNNIK_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.03059	2036.04662	0.83391	0.00084978	1.5817	0.0016118	2.4156	0.0024615	1019.03034011411	17.344	0.16848	17.344	17.273	17.442	0	171	85	1.20972836110953	0.0556727806631161	1.20972836110953	487.812158512044	0	22.4495516338342						714	20	5	NaN	NaN	NaN	0.0021654	1	32268	57.042	52.488	1	180660			11029	2658	9276	9518	11029	11029		
LAYIAHPK	8	Unmodified	_LAYIAHPK_			0	0	0	P47914	P47914	P47914	RPL29	60S ribosomal protein L29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.76872	911.522887	0.95943	0.00043824	1.6738	0.00076453	2.6332	0.0012028	456.769554756725	3.4124	0.43459	3.4124	3.3681	3.8026	0	708	40	0.849494101904619	0.0264894101708458	0.849494101904619	345.397701603022	0	10.7703883632816						770	50	4	NaN	NaN	NaN	0.028214	1	2533	42.229	17.378	1	545040			11030	1102	9277	9519	11030	11030		
LAYINPDLALEEK	13	Unmodified	_LAYINPDLALEEK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.900857	1487.78716	1.5299	0.0011397	0.24975	0.00018604	1.7797	0.0013257	744.90213767357	13.141	0.39908	13.141	13.026	13.425	0	435	70	1.03374239103424	0.0462661800803514	1.03374239103424	417.886076140828	0	18.7029114985405						1423	46	6	NaN	NaN	NaN	3.0422E-07	1	18177	121.96	82.926	1	1481600			11031	934	9278	9520	11031	11031		
LAYLQILSEETSVK	14	Unmodified	_LAYLQILSEETSVK_			0	0	0	P19525	P19525	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.440346	1592.86614	1.0262	0.00081837	-1.6761	-0.0013366	-0.64985	-0.00051822	797.438632273122	15.837	0.11528	15.837	15.792	15.908	0	384	40	1.06790610341098	0.0260927771036219	1.06790610341098	431.434070480019	0	10.5414820647495						306	14	4	NaN	NaN	NaN	1.0622E-05	1	21367	115.04	107.04	1	113490			11032	770	9279	9521	11032	11032		
LAYQVLAEK	9	Unmodified	_LAYQVLAEK_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.797675	1033.5808	0.94466	0.00048914	1.91	0.00098902	2.8547	0.0014782	517.798997492849	7.997	0.15974	7.997	7.935	8.0947	0	663	40	0.880024865079826	0.026423290319909	0.880024865079826	357.183354307838	0	10.7246509079703						253	19	2	NaN	NaN	NaN	0.0535	1	5097	42.075	18.499	1	92615			11033	2687	9280	9522	11033	11033		
LAYVAAGDLAPINAFIGGLAAQEVMK	26	Unmodified	_LAYVAAGDLAPINAFIGGLAAQEVMK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	868.468242	2602.3829	1.3697	0.0011895	-0.25766	-0.00022377	1.112	0.00096575	868.802840508603	20.093	0.044338	20.093	20.093	20.137	0	225	58	1.17390432875292	0.0378896560642905	1.17390432875292	709.000676934846	0	22.884140675202						250	6	6	NaN	NaN	NaN	0.00067952	1	37252	66.913	66.535	1	124050			11034	804	9281	9523	11034	11034		
LAYVAAGDLAPINAFIGGLAAQEVMK	26	Oxidation (M)	_LAYVAAGDLAPINAFIGGLAAQEVM(Oxidation (M))K_	LAYVAAGDLAPINAFIGGLAAQEVM(1)K	LAYVAAGDLAPINAFIGGLAAQEVM(63)K	0	1	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	873.79988	2618.37781	1.4064	0.0012289	0.40353	0.00035261	1.8099	0.0015815	874.134789910503	20.04	0.08866	20.04	20.031	20.119	0	234	67	1.16792504164217	0.0438933519706592	1.16792504164217	705.366483354493	0	26.5093205627751						214	11	4	NaN	NaN	NaN	0.00034243	1	37311	63.421	57.034	1	117940			11035	804	9281	9524	11035	11035	267	
LCDEQLSSQSHYDFGLR	17	Unmodified	_LCDEQLSSQSHYDFGLR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.646061	2053.91635	0.81693	0.00056013	1.2212	0.00083731	2.0381	0.0013974	685.981329717063	10.214	0.11525	10.214	10.179	10.294	0	597	61	0.924688525662974	0.0405358392902467	0.924688525662974	559.273787903572	0	24.517047369494						496	14	4	NaN	NaN	NaN	3.0051E-10	1	32590	106.47	100.44	1	130970			11036	1737	9282	9525	11036	11036		
LCDLEIMPSSEAADGEK	17	Unmodified	_LCDLEIMPSSEAADGEK_			0	0	0	Q96CN9	Q96CN9	Q96CN9	GCC1	GRIP and coiled-coil domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.918791	1863.82303	1.8582	0.0017335	-2.0325	-0.0018962	-0.17438	-0.00016269	933.418205363367	11.146	0.08868	11.146	11.092	11.181	0	294	40	1.12800004657306	0.0259959052130696	1.12800004657306	455.14049945582	0	10.489174462739						168	11	3	NaN	NaN	NaN	0.013107	1	28773	26.517	25.84	1	25935			11037	2494	9283	9526	11037	11037		
LCDSYEIRPGK	11	Unmodified	_LCDSYEIRPGK_			0	0	1	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.555455	1336.64454	-0.11792	-5.2658E-05	-0.54193	-0.000242	-0.65985	-0.00029466	446.555366846433	5.0883	0.16845	5.0883	5.0263	5.1947	0	804	34	0.78414869089473	0.0225109626091257	0.78414869089473	475.974779435268	0	13.6640545181915						404	20	4	NaN	NaN	NaN	0.0075331	1	13489	67.507	51.926	1	150490			11038	196	9284	9527	11038	11038		
LCDSYEIRPGK	11	Unmodified	_LCDSYEIRPGK_			0	0	1	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.329544	1336.64454	2.5655	0.0017172	-3.2172	-0.0021534	-0.65163	-0.00043616	669.326736908269	5.0795	0.23052	5.0795	4.9642	5.1947	0	522	52	0.975277694896658	0.0343435388719882	0.975277694896658	394.662543822288	0	13.8976913816476						548	27	4	NaN	NaN	NaN	0.06588	1	13490	43.168	25.437	1	170070			11039	196	9284	9527	11039	11039		
LCEAICPAQAITIEAEPR	18	Unmodified	_LCEAICPAQAITIEAEPR_			0	0	0	O00217	O00217	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.5059	2040.99725	1.4224	0.001453	1.9922	0.002035	3.4146	0.0034881	1022.00959847889	13.096	0.14188	13.096	13.034	13.176	0	177	61	1.2057522832638	0.0397607969895324	1.2057522832638	486.200851892975	0	16.0329228785916						358	17	2	NaN	NaN	NaN	0.0003715	1	32358	62.494	60.906	1	105540			11040	62	9285	9528	11040	11040		
LCELQPEEK	9	Unmodified	_LCELQPEEK_			0	0	0	P49005	P49005	P49005	POLD2	DNA polymerase delta subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.278989	1144.54342	1.2383	0.00070988	2.9104	0.0016685	4.1487	0.0023784	573.28034918326	4.6627	0.15962	4.6627	4.6095	4.7691	0	639	34	0.896281965493857	0.0223395647977513	0.896281965493857	363.317831598365	0	9.05559026471991						255	19	2	NaN	NaN	NaN	0.0011738	1	7909	91.783	79.716	1	69580			11041	1120	9286	9529	11041	11041		
LCENIAGHLK	10	Unmodified	_LCENIAGHLK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	385.537736	1153.59138	-0.8952	-0.00034514	-0.15895	-6.128E-05	-1.0542	-0.00040642	385.537765196155	5.1947	0.15076	5.1947	5.1593	5.31	0	882	28	0.730840773481911	0.0184849145635965	0.730840773481911	444.335559374098	0	11.2384327073965						233	18	4	NaN	NaN	NaN	0.045321	1	8160	36.211	26.696	1	62685			11042	501	9287	9530	11042	11042		
LCENIAGHLK	10	Unmodified	_LCENIAGHLK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.802965	1153.59138	1.2458	0.00071984	1.0547	0.00060943	2.3006	0.0013293	577.803686978711	5.1947	0.10639	5.1947	5.1593	5.2657	0	558	49	0.951016745717027	0.0323613705025652	0.951016745717027	385.469194720883	0	13.1168157488992						210	13	3	NaN	NaN	NaN	0.0028752	1	8162	60.892	40.658	1	40015			11043	501	9287	9530	11043	11043		
LCGDTSLNNMQR	12	Unmodified	_LCGDTSLNNMQR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.819018	1407.62348	2.2298	0.0015716	-2.601	-0.0018332	-0.37115	-0.0002616	704.818362915523	5.5849	0.23059	5.5849	5.5051	5.7357	0	510	31	0.983355730988811	0.0201895069753196	0.983355730988811	397.726047865369	0	8.16580670107015						430	27	5	NaN	NaN	NaN	2.7685E-07	1	15684	127.94	112.36	1	166250			11044	74	9288	9531	11044	11044		
LCGPYEK	7	Unmodified	_LCGPYEK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.707471	865.400389	-0.90976	-0.00039457	3.3852	0.0014682	2.4755	0.0010736	433.709142051339	3.1996	0.35468	3.1996	3.0932	3.4479	0	774	34	0.804600385996946	0.0224827809983855	0.804600385996946	327.402926076477	0	9.14855176969303						399	41	3	NaN	NaN	NaN	0.067986	1	1783	38.322	28.929	1	81226			11045	2415	9289	9532	11045	11045		
LCIEVTPQSK	10	Unmodified	_LCIEVTPQSK_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.810456	1173.60636	1.0486	0.00061637	-0.70445	-0.00041408	0.34414	0.00020229	587.81064290277	7.6334	0.15968	7.6334	7.5801	7.7398	0	624	34	0.906433495720521	0.0223271759310266	0.906433495720521	367.324547229689	0	9.04790018076591						257	19	3	NaN	NaN	NaN	0.0010127	1	8700	65.404	49.906	1	67078			11046	1335	9290	9533	11046	11046		
LCLISTFLEDGIR	13	Unmodified	_LCLISTFLEDGIR_			0	0	0	O15260	O15260	O15260	SURF4	Surfeit locus protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.908159	1535.80176	1.2032	0.00092511	0.25537	0.00019635	1.4585	0.0011215	768.908635940504	18.798	0.13299	18.798	18.763	18.896	0	387	58	1.06589869032374	0.0381566484153506	1.06589869032374	430.760958763159	0	15.4202220190299						652	16	5	NaN	NaN	NaN	2.7609E-07	1	19611	138.23	125.06	1	361110			11047	158	9291	9534	11047	11047		
LCLNICVGESGDR	13	Unmodified	_LCLNICVGESGDR_			0	0	0	P62913	P62913	P62913	RPL11	60S ribosomal protein L11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.847775	1491.681	1.5494	0.0011572	-4.9808	-0.0037199	-3.4314	-0.0025627	746.844652536206	11.465	0.31047	11.465	11.296	11.607	0	429	70	1.03776581230406	0.0463109185444219	1.03776581230406	419.502455580071	0	18.7205473712998						1004	36	4	NaN	NaN	NaN	7.471E-06	1	18278	106	92.008	1	429820			11048	1415	9292	9535	11048	11048		
LCLPSFDK	8	Unmodified	_LCLPSFDK_			0	0	0	O15382	O15382	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.249503	978.484453	-0.47789	-0.00023428	-0.92135	-0.00045169	-1.3992	-0.00068597	490.249013853551	11.252	0.19512	11.252	11.154	11.35	0	729	40	0.835224628594324	0.0265115052801159	0.835224628594324	339.250671041758	0	10.7684156437572						313	23	2	NaN	NaN	NaN	0.020524	1	3804	56.014	44.365	1	88778			11049	171	9293	9536	11049	11049		
LCLQQGQLCEPLPSLAESR	19	Unmodified	_LCLQQGQLCEPLPSLAESR_			0	0	0	Q6XQN6	Q6XQN6	Q6XQN6	NAPRT	Nicotinate phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1100.04846	2198.08237	1.0543	0.0011597	-0.77774	-0.00085555	0.27651	0.00030418	1100.04743766542	14.01	0.15074	14.01	13.912	14.063	0	138	79	1.23157729878518	0.0515474785147412	1.23157729878518	496.374531234435	0	20.7756796989605						631	18	3	NaN	NaN	NaN	2.119E-05	1	34656	78.888	75.813	1	161430			11050	2093	9294	9537	11050	11050		
LCLTLHNNEGSYLAHTQGK	19	Unmodified	_LCLTLHNNEGSYLAHTQGK_			0	0	0	Q15428	Q15428	Q15428	SF3A2	Splicing factor 3A subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	539.769286	2155.04804	0.78693	0.00042476	1.987	0.0010725	2.7739	0.0014973	539.769648261819	8.2454	0.10649	8.2454	8.1833	8.2898	0	657	40	0.884090832094921	0.0264269571469923	0.884090832094921	712.732483654449	0	21.3047688303403						222	13	4	NaN	NaN	NaN	0.0085183	1	34110	45.654	42.366	1	78761			11051	1848	9295	9538	11051	11051		
LCNDHEVLTFIK	12	Unmodified	_LCNDHEVLTFIK_			0	0	0	Q8WVV9	Q8WVV9	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.922026	1487.74425	-0.24943	-0.00012395	3.8392	0.0019078	3.5898	0.0017838	497.26005229261	10.294	0.16849	10.294	10.197	10.365	0	684	28	0.86578508874114	0.018315911392907	0.86578508874114	524.981898080498	0	11.1061302084836						225	20	3	NaN	NaN	NaN	0.037981	1	18171	27.378	22.85	1	67261			11052	2382	9296	9539	11052	11052		
LCNEEQELLR	10	Unmodified	_LCNEEQELLR_			0	0	0	Q13042	Q13042	Q13042	CDC16	Cell division cycle protein 16 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.319177	1302.6238	2.4463	0.0015958	-0.12009	-7.8338E-05	2.3262	0.0015174	652.318562142145	7.7221	0.16857	7.7221	7.66	7.8285	0	543	40	0.961130371139249	0.0262808772147128	0.961130371139249	389.041510085639	0	10.6378410931578						211	20	2	NaN	NaN	NaN	0.050682	1	12423	34.781	25.267	1	61260			11053	1619	9297	9540	11053	11053		
LCNIFSTK	8	Unmodified	_LCNIFSTK_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.754953	981.495352	-0.15896	-7.8171E-05	-0.83901	-0.00041259	-0.99797	-0.00049076	491.754539949209	8.5825	0.2751	8.5825	8.5382	8.8133	0	729	58	0.835224628594324	0.0387314421406671	0.835224628594324	339.236246101637	0	15.731227969194						538	32	3	NaN	NaN	NaN	0.0033096	1	3872	90.308	53.739	1	214210			11054	652;1534	9298	9541	11054	11054		
LCNLEEGSPGSGTYTR	16	Unmodified	_LCNLEEGSPGSGTYTR_			0	0	0	Q9Y3B2	Q9Y3B2	Q9Y3B2	EXOSC1	Exosome complex component CSL4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.896508	1739.77846	2.4822	0.0021617	-1.465	-0.0012759	1.0172	0.00088585	870.895637566893	6.3919	0.088666	6.3919	6.3476	6.4363	0	375	49	1.07392668217569	0.0321031230176227	1.07392668217569	433.550430801599	0	12.9602169732571						387	11	4	NaN	NaN	NaN	0.001171	1	25581	61.067	59.083	1	91669			11055	3378	9299	9542	11055	11055		
LCPEASDIATSVR	13	Unmodified	_LCPEASDIATSVR_			0	0	0	Q96T51	Q96T51	Q96T51	RUFY1	RUN and FYVE domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.850841	1417.68713	2.1973	0.0015597	-0.024541	-1.742E-05	2.1727	0.0015423	709.851050139101	8.2366	0.23061	8.2366	8.0947	8.3253	0	432	58	1.035754240522	0.0382409924539848	1.035754240522	418.890098879012	0	15.4658049984987						383	27	4	NaN	NaN	NaN	0.00044359	1	16008	54.27	42.313	1	99069			11056	2629	9300	9543	11056	11056		
LCPGGQLPFLLYGTEVHTDTNK	22	Unmodified	_LCPGGQLPFLLYGTEVHTDTNK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.745775	2459.2155	2.0923	0.0017172	-0.16054	-0.00013176	1.9317	0.0015854	821.080514482961	15.579	0.20392	15.579	15.517	15.721	0	405	67	1.05384839605172	0.0442271274144359	1.05384839605172	636.68754591555	0	26.720030435013						1445	24	7	NaN	NaN	NaN	7.1062E-17	1	36621	203.52	201.07	1	1641400			11057	71	9301	9544	11057	11057		
LCPNSTGAEIR	11	Unmodified	_LCPNSTGAEIR_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.300787	1216.58702	1.919	0.0011693	0.2324	0.0001416	2.1514	0.0013109	609.300755430688	4.4677	0.16846	4.4677	4.4322	4.6007	0	612	46	0.914549654013882	0.0304208382695857	0.914549654013882	370.461401193257	0	12.3227277178032						313	20	3	NaN	NaN	NaN	0.0057291	1	9915	55.235	30.384	1	86335			11058	981	9302	9545	11058	11058		
LCPQLMPMLEEALR	14	Unmodified	_LCPQLMPMLEEALR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.930254	1699.84595	1.212	0.0010313	-1.8469	-0.0015716	-0.63488	-0.00054024	850.928399278179	18.781	0.17734	18.781	18.674	18.851	0	342	61	1.09598084995137	0.0400902123733129	1.09598084995137	442.535983940227	0	16.1876565450792						253	21	2	NaN	NaN	NaN	0.053739	1	24489	41.824	31.736	1	70412			11059	2356	9303	9546	11059	11059		
LCPTHADSLNNLANIK	16	Unmodified	_LCPTHADSLNNLANIK_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.305199	1779.89377	-0.14577	-8.663E-05	-0.19987	-0.00011878	-0.34564	-0.00020541	594.305223223769	8.9642	0.062111	8.9642	8.9287	8.9908	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	525.420124407758	0	12.3206278097933						171	8	3	NaN	NaN	NaN	5.7515E-05	1	26678	78.864	65.066	1	37048			11060	161	9304	9547	11060	11060		
LCQGLFFR	8	Unmodified	_LCQGLFFR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.770937	1039.52732	-0.16348	-8.5134E-05	-2.4598	-0.001281	-2.6233	-0.0013661	520.76981960195	11.642	0.15969	11.642	11.562	11.722	0	684	34	0.86578508874114	0.0223861150035557	0.86578508874114	351.377330614686	0	9.08536475745962						395	19	3	NaN	NaN	NaN	0.001322	1	5217	84.064	73.236	1	187010			11061	3410	9305	9548	11061	11061		
LCSDLMNCLHER	12	Unmodified	_LCSDLMNCLHER_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.563627	1546.66905	-0.17394	-8.985E-05	-1.1994	-0.00061955	-1.3733	-0.0007094	516.56323855735	8.9109	0.12432	8.9109	8.8753	8.9996	0	720	28	0.841341816837976	0.0183464663932061	0.841341816837976	509.981446058383	0	11.1207564797301						335	15	5	NaN	NaN	NaN	2.7904E-05	1	19933	90.142	84.992	1	105200			11062	3294	9306	9549	11062	11062		
LCSDLMNCLHER	12	Unmodified	_LCSDLMNCLHER_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.341803	1546.66905	1.9023	0.001473	-0.53876	-0.00041718	1.3636	0.0010559	774.34188871497	8.9109	0.062192	8.9109	8.8842	8.9464	0	363	22	1.08195024817156	0.014036403514655	1.08195024817156	437.220420941933	0	5.67216677805612						106	8	3	NaN	NaN	NaN	0.0032447	1	19934	43.306	42.049	1	20874			11063	3294	9306	9549	11063	11063		
LCSGPGIVGNVLVDPSAR	18	Unmodified	_LCSGPGIVGNVLVDPSAR_			0	0	0	Q9Y5P6	Q9Y5P6	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.977635	1809.94072	1.7926	0.0016241	-6.3241	-0.0057295	-4.5314	-0.0041054	905.973197294858	13.469	0.15074	13.469	13.389	13.54	0	288	37	1.13199748998575	0.0239780653182871	1.13199748998575	456.853900086692	0	9.67711744425401						251	18	3	NaN	NaN	NaN	0.002258	1	27478	62.494	48.716	1	71563			11064	3440	9307	9550	11064	11064		
LCSGVLGTVVHGK	13	Unmodified	_LCSGVLGTVVHGK_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.911462	1325.71256	-0.34295	-0.0001519	-0.69276	-0.00030683	-1.0357	-0.00045873	442.911561204872	7.7487	0.22171	7.7487	7.7044	7.9261	0	759	37	0.814815566123307	0.024507911533163	0.814815566123307	494.631109001645	0	14.8774470750944						579	26	5	NaN	NaN	NaN	0.00030448	1	13165	92.428	78.433	1	275560			11065	3458	9308	9551	11065	11065		
LCSGVLGTVVHGK	13	Unmodified	_LCSGVLGTVVHGK_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.863554	1325.71256	2.6028	0.0017279	-0.28005	-0.00018591	2.3228	0.001542	663.863705462229	7.7487	0.17739	7.7487	7.7132	7.8906	0	441	37	1.02971785871157	0.0241538670444676	1.02971785871157	416.727821212383	0	9.77509353862149						408	21	5	NaN	NaN	NaN	2.6607E-07	1	13166	117.99	85.845	1	168140			11066	3458	9308	9551	11066	11066		
LCSLFYTNEEVAK	13	Unmodified	_LCSLFYTNEEVAK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.381974	1572.74939	2.1389	0.0016842	0.035811	2.8197E-05	2.1747	0.0017123	787.38238361142	11.181	0.31925	11.181	11.083	11.403	0	381	55	1.06991323971056	0.0361209959185984	1.06991323971056	432.292600562959	0	14.5944911054648						1043	37	6	NaN	NaN	NaN	0.0032125	1	20746	83.438	56.859	1	538190			11067	1062	9309	9552	11067	11067		
LCSLLDSEDYNTCEGAFGALQK	22	Unmodified	_LCSLLDSEDYNTCEGAFGALQK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1246.05942	2490.10429	0.78846	0.00098246	0.17242	0.00021485	0.96088	0.0011973	1246.56099515468	15.083	0.062076	15.083	15.056	15.118	0	63	46	1.28111162701928	0.0296839714567931	1.28111162701928	515.958340714668	0	11.9550024647759						288	8	5	NaN	NaN	NaN	1.306E-16	1	36777	91.457	87.15	1	51310			11068	2448	9310	9553	11068	11068		
LCTFILK	7	Unmodified	_LCTFILK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.759507	893.50446	-0.60587	-0.00027128	-1.323	-0.00059241	-1.9289	-0.00086369	447.758954530534	10.649	0.13298	10.649	10.596	10.729	0	741	31	0.827064408645228	0.020406225036543	0.827064408645228	336.37861700496	0	8.29949600579266						242	16	3	NaN	NaN	NaN	0.026553	1	2234	69.093	44.274	1	67248			11069	1261	9311	9554	11069	11069		
LCTQLEGLQSTVTGHVER	18	Unmodified	_LCTQLEGLQSTVTGHVER_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.677472	2027.01059	1.6256	0.0011	-0.23089	-0.00015624	1.3947	0.00094379	677.011817319466	10.906	0.11527	10.906	10.871	10.986	0	525	40	0.973257487423603	0.0262699700789047	0.973257487423603	588.701876738192	0	15.8901224877771						196	14	2	NaN	NaN	NaN	2.3668E-05	1	32101	66.509	63.794	1	87623			11070	2063	9312	9555	11070	11070		
LCTSATESEVAR	12	Unmodified	_LCTSATESEVAR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.314091	1322.61363	2.4496	0.0016224	-2.6021	-0.0017234	-0.15254	-0.00010103	662.313146699982	4.2904	0.19506	4.2904	4.2549	4.4499	0	549	43	0.957085760909907	0.0283161971552985	0.957085760909907	387.342911480177	0	11.4598698425444						670	23	5	NaN	NaN	NaN	1.3463E-16	1	13058	175.07	136.03	1	307740			11071	927	9313	9556	11071	11071		
LCTVNSVEEK	10	Unmodified	_LCTVNSVEEK_			0	0	0	P51531;P51532	P51531;P51532	P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.789721	1177.56489	2.1343	0.0012588	0.37367	0.00022039	2.508	0.0014792	589.790696377213	4.1041	0.13304	4.1041	4.0598	4.1928	0	606	28	0.918606045818476	0.0182499701953044	0.918606045818476	372.242828235866	0	7.39535794658036						120	16	3	NaN	NaN	NaN	0.0037639	1	8820	74.269	35.259	1	34341			11072	1187;1186	9314	9557	11072	11072		
LCVPAMNVNDSVTK	14	Unmodified	_LCVPAMNVNDSVTK_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.381451	1546.74835	2.2153	0.0017155	0.51122	0.00039588	2.7265	0.0021113	774.38224551473	10.498	0.33697	10.498	10.401	10.738	0	438	55	1.03173026378327	0.0362008098863784	1.03173026378327	416.926130948297	0	14.6288852163526						478	39	2	NaN	NaN	NaN	0.030549	1	19944	51.531	44.391	1	235330			11073	242	9315	9558	11073	11073		
LCYDAFTENMAGENQLLER	19	Unmodified	_LCYDAFTENMAGENQLLER_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.51191	2273.00927	0.93626	0.001065	-0.065643	-7.467E-05	0.87062	0.00099034	1138.01338455936	14.976	0.12415	14.976	14.941	15.065	0	93	61	1.26131825079847	0.039619309957897	1.26131825079847	508.256051781012	0	15.9648479206112						625	15	5	NaN	NaN	NaN	1.4413E-14	1	35393	118.26	115.19	1	179910			11074	1465	9316	9559	11074	11074		
LCYGLNMDFVDPAQITMK	18	Unmodified	_LCYGLNMDFVDPAQITMK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1058.49923	2114.9839	0.7209	0.00076308	1.9085	0.0020201	2.6294	0.0027832	1059.00208889497	18.027	0.097565	18.027	17.974	18.071	0	156	49	1.21966378336455	0.0317868179326015	1.21966378336455	491.69418784557	0	12.8145099007945						233	12	2	NaN	NaN	NaN	2.4436E-10	1	33540	97.949	86.27	1	69527			11075	828	9317	9560	11075	11075		
LCYVALDFEQEMATAASSSSLEK	23	Unmodified	_LCYVALDFEQEMATAASSSSLEK_			0	0	0	P60709;Q6S8J3;P63261	P60709;P63261	P60709	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1275.59055	2549.16656	1.2196	0.0015557	-0.99254	-0.0012661	0.22704	0.00028961	1276.09118375276	18.444	0.20399	18.444	18.399	18.603	0	66	127	1.27913350869533	0.0832462920238939	1.27913350869533	515.095380564207	0	33.5225214405825						1533	24	6	NaN	NaN	NaN	1.0255E-17	1	37018	125.52	117.88	1	574830			11076	1310;1436	9318	9561	11076	11076		
LCYVALDFEQEMATAASSSSLEK	23	Unmodified	_LCYVALDFEQEMATAASSSSLEK_			0	0	0	P60709;Q6S8J3;P63261	P60709;P63261	P60709	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1275.59055	2549.16656	1.6464	0.0021002	0.23577	0.00030075	1.8822	0.0024009	1276.09258895925	18.444	0.044338	18.444	18.426	18.47	0	198	25	1.1918274123006	0.0159261604744738	1.1918274123006	479.938009783621	0	6.41331931345582						60	6	2	NaN	NaN	NaN	0.00018491	1	37021	51.577	50.208	1	15296			11077	1310;1436	9318	9561	11077	11077		
LCYVALDFEQEMATAASSSSLEK	23	Unmodified	_LCYVALDFEQEMATAASSSSLEK_			0	0	0	P60709;Q6S8J3;P63261	P60709;P63261	P60709	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	850.729462	2549.16656	1.9657	0.0016722	1.3828	0.0011764	3.3484	0.0028486	851.065724543763	18.444	0.47001	18.444	18.364	18.834	0	357	88	1.08596037261705	0.0581268334323162	1.08596037261705	655.958070219536	0	35.1106416474004						2348	54	7	NaN	NaN	NaN	5.4306E-13	1	37024	207	195.94	1	2116200			11078	1310;1436	9318	9561	11078	11078		
LCYVALDFEQEMATAASSSSLEK	23	Oxidation (M)	_LCYVALDFEQEM(Oxidation (M))ATAASSSSLEK_	LCYVALDFEQEM(1)ATAASSSSLEK	LCYVALDFEQEM(76)ATAASSSSLEK	0	1	0	P60709;Q6S8J3;P63261	P60709;P63261	P60709	ACTB;POTEE;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.0611	2565.16147	2.3565	0.0020173	0.77948	0.00066728	3.136	0.0026846	856.396334809386	14.613	0.20393	14.613	14.533	14.737	0	348	43	1.09197348738011	0.0280554094154091	1.09197348738011	659.567903396855	0	16.9458762331841						630	24	5	NaN	NaN	NaN	0.00026356	1	37087	75.969	72.396	1	169230			11079	1310;1436	9318	9562	11079	11079	467	
LCYVGYNIEQEQK	13	Unmodified	_LCYVGYNIEQEQK_			0	0	0	P61160	P61160	P61160	ACTR2	Actin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.39033	1642.76611	1.7421	0.0014327	0.85329	0.00070174	2.5954	0.0021344	822.390544757924	9.3011	0.16851	9.3011	9.2479	9.4164	0	375	49	1.07392668217569	0.0321075493337244	1.07392668217569	433.752755996512	0	12.9680528875422						459	20	5	NaN	NaN	NaN	2.4968E-11	1	22829	142.71	137.56	1	334350			11080	1331	9319	9563	11080	11080		
LDADAVSPTVSQLSAVFEK	19	Unmodified	_LDADAVSPTVSQLSAVFEK_			0	0	0	Q96SB3	Q96SB3	Q96SB3	PPP1R9B	Neurabin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.012395	1976.01024	0.84341	0.00083414	0.2634	0.00026051	1.1068	0.0010946	989.512292961363	17.202	0.15076	17.202	17.131	17.282	0	180	43	1.203763835057	0.027844013131697	1.203763835057	485.506890721061	0	11.2301598096494						248	18	3	NaN	NaN	NaN	0.00056406	1	31219	45.654	38.798	1	49663			11081	2620	9320	9564	11081	11081		
LDADKYENDPELEK	14	Unmodified	_LDADKYENDPELEK_			0	0	1	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.265063	1677.77336	0.58804	0.00032946	0.66952	0.00037511	1.2576	0.00070457	560.265487595498	5.9929	0.070872	5.9929	5.9663	6.0372	0	708	40	0.849494101904619	0.0264894101708458	0.849494101904619	514.566264091669	0	16.0454990788559						177	9	3	NaN	NaN	NaN	0.0044534	1	23840	65.173	61.19	1	42967			11082	2757	9321	9565	11082	11082		
LDADKYENDPELEK	14	Unmodified	_LDADKYENDPELEK_			0	0	1	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.893957	1677.77336	3.328	0.0027952	-1.3772	-0.0011567	1.9508	0.0016385	839.894755775132	5.9929	0.15955	5.9929	5.9663	6.1259	0	360	70	1.08395544855938	0.0461450733802129	1.08395544855938	437.726921013262	0	18.6344751691564						443	19	4	NaN	NaN	NaN	0.050283	1	23841	51.569	46.475	1	138150			11083	2757	9321	9565	11083	11083		
LDADPSLQR	9	Unmodified	_LDADPSLQR_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.764363	1013.51417	1.3306	0.00067562	0.57057	0.00028971	1.9011	0.00096533	507.764911973743	5.0883	0.38127	5.0883	5.0174	5.3987	0	708	46	0.849494101904619	0.030568952954407	0.849494101904619	344.88128268928	0	12.4105154841532						683	44	3	NaN	NaN	NaN	6.7978E-09	1	4590	150.88	115.25	1	880770		+	11084	39	9322	9566	11084	11084		
LDAEDVIGSR	10	Unmodified	_LDAEDVIGSR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.774928	1073.5353	0.10027	5.3923E-05	-1.5799	-0.00084962	-1.4796	-0.00079569	537.774265715716	8.9198	0.097694	8.9198	8.8842	8.9819	0	690	34	0.86171403876517	0.0223954425033767	0.86171403876517	349.580254292772	0	9.08538579288842						175	12	2	NaN	NaN	NaN	0.007163	1	6036	43.272	28.509	1	47699			11085	1074	9323	9567	11085	11085		
LDAENAIVHMGGQWLGGR	18	Unmodified	_LDAENAIVHMGGQWLGGR_			0	0	0	Q01085	Q01085	Q01085	TIAL1	Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.987981	1922.94211	-0.44611	-0.0002864	-1.841	-0.0011819	-2.2871	-0.0014683	642.320955769533	15.367	0.11524	15.367	15.331	15.446	0	702	46	0.853568545818287	0.0305477275700197	0.853568545818287	516.494531277857	0	18.4844372606952						378	14	4	NaN	NaN	NaN	3.2702E-05	1	30114	82.437	80.047	1	106300			11086	1512	9324	9568	11086	11086		
LDAEPRPPPTQEAA	14	Unmodified	_LDAEPRPPPTQEAA_			0	0	1	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.375537	1490.73652	2.3074	0.0017222	-2.3766	-0.0017738	-0.069208	-5.1655E-05	746.3741631789	5.7357	0.41677	5.7357	5.4785	5.8953	0	471	49	1.00957851518677	0.0322496762146521	1.00957851518677	408.11049810374	0	13.0365605306201						804	48	4	NaN	NaN	NaN	2.6309E-05	1	18252	105.94	96.966	1	286400			11087	3337	9325	9569	11087	11087		
LDAFIEALHQEK	12	Unmodified	_LDAFIEALHQEK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.372266	1412.72998	1.6933	0.0011978	1.4213	0.0010054	3.1145	0.0022031	707.373501263133	10.676	0.088663	10.676	10.64	10.729	0	390	22	1.06389100039157	0.014055768642631	1.06389100039157	430.28402906434	0	5.68476729375618						146	11	3	NaN	NaN	NaN	0.0057741	1	15857	44.598	30.142	1	30783			11088	255	9326	9570	11088	11088		
LDAGNQLALIEELHK	15	Unmodified	_LDAGNQLALIEELHK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.305305	1662.89408	-0.48104	-0.00026713	-1.6859	-0.00093617	-2.1669	-0.0012033	555.304398490681	13.371	0.12419	13.371	13.336	13.46	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	518.305993344338	0	12.337594373552						293	15	4	NaN	NaN	NaN	0.00014625	1	23431	93.772	89.789	1	133090			11089	2420	9327	9571	11089	11089		
LDAIEDLMVVPDK	13	Unmodified	_LDAIEDLMVVPDK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.381442	1456.74833	0.6745	0.00049197	-1.0673	-0.00077847	-0.3928	-0.0002865	729.38068041372	16.032	0.23056	16.032	15.908	16.138	0	453	46	1.02166545906632	0.0301985912511542	1.02166545906632	413.085118188574	0	12.210052248915						372	27	3	NaN	NaN	NaN	0.00033593	1	17154	64.266	59.115	1	85192			11090	1218	9328	9572	11090	11090		
LDALSNFHFIPKPPVPEIK	19	Unmodified	_LDALSNFHFIPKPPVPEIK_			0	0	1	O00566	O00566	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	541.305667	2161.19356	-0.3338	-0.00018069	-0.82613	-0.00044719	-1.1599	-0.00062787	541.556149085506	15.234	0.14188	15.234	15.154	15.296	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	696.321317825705	0	13.127687673903						384	17	5	NaN	NaN	NaN	0.029311	1	34195	51.829	47.275	1	103070			11091	91	9329	9573	11091	11091		
LDALSNFHFIPKPPVPEIK	19	Unmodified	_LDALSNFHFIPKPPVPEIK_			0	0	1	O00566	O00566	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.40513	2161.19356	1.5078	0.0010877	1.3837	0.0009982	2.8914	0.0020859	721.740642792618	15.225	0.088649	15.225	15.18	15.269	0	360	28	1.08395544855938	0.0180468052044267	1.08395544855938	655.383887348595	0	10.911505048311						231	11	4	NaN	NaN	NaN	0.0028566	1	34196	19.51	16.616	1	47643			11092	91	9329	9573	11092	11092		
LDASESLR	8	Unmodified	_LDASESLR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.732532	889.45051	0.051581	2.2991E-05	1.9827	0.00088374	2.0342	0.00090673	445.73347758455	4.4233	0.2926	4.4233	4.3701	4.6627	0	765	52	0.810730346695089	0.0347219621408564	0.810730346695089	329.758050810544	0	14.1228789603858						446	34	2	NaN	NaN	NaN	0.0076684	1	2142	65.313	27.704	1	175530			11093	1503	9330	9574	11093	11093		
LDAVNTLLAMAER	13	Unmodified	_LDAVNTLLAMAER_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.879401	1415.74425	0.67284	0.00047696	-2.3973	-0.0016994	-1.7244	-0.0012224	708.878318173657	18.302	0.11528	18.302	18.248	18.364	0	498	46	0.991429299781895	0.0302654273538991	0.991429299781895	400.969087989684	0	12.2404096856737						387	14	4	NaN	NaN	NaN	1.1222E-05	1	15971	126.48	78.918	1	120520			11094	3136	9331	9575	11094	11094		
LDDCGLTEAR	10	Unmodified	_LDDCGLTEAR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.26387	1148.51319	1.7244	0.00099196	3.9712	0.0022845	5.6956	0.0032765	575.265994477994	5.6647	0.20397	5.6647	5.6203	5.8243	0	618	28	0.910492137470517	0.0182575606051391	0.910492137470517	369.062891477352	0	7.40059999526767						382	24	5	NaN	NaN	NaN	6.0286E-05	1	8016	123.5	91.551	1	237920			11095	678	9332	9576	11095	11095		
LDDHALTGASDSR	13	Unmodified	_LDDHALTGASDSR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.320762	1356.62697	2.4938	0.0016941	-1.4435	-0.00098063	1.0503	0.00071348	679.319966833197	4.4056	0.14186	4.4056	4.3701	4.512	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.603042511531	0	8.991266255298						307	17	4	NaN	NaN	NaN	4.9431E-05	1	14081	94.66	84.409	1	82588			11096	1594	9333	9577	11096	11096		
LDDIEEFENIRK	12	Unmodified	_LDDIEEFENIRK_			0	0	1	Q8NHZ8	Q8NHZ8	Q8NHZ8	CDC26	Anaphase-promoting complex subunit CDC26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.591222	1519.75184	-0.73274	-0.00037193	-3.3749	-0.001713	-4.1076	-0.002085	507.589167623222	10.179	0.13302	10.179	10.108	10.241	0	738	37	0.829104889055312	0.0244908762672863	0.829104889055312	502.642872656388	0	14.847535653646						282	16	3	NaN	NaN	NaN	0.0047838	1	19128	27.589	26.332	1	78722			11097	2326	9334	9578	11097	11097		
LDDIFEPVLIPEPK	14	Unmodified	_LDDIFEPVLIPEPK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.945264	1623.87598	1.5663	0.0012733	0.07703	6.2621E-05	1.6434	0.001336	812.945050548895	17.637	0.18619	17.637	17.539	17.725	0	372	61	1.07593298845566	0.040134443533411	1.07593298845566	434.605367837428	0	16.2116458756644						783	22	4	NaN	NaN	NaN	1.5216E-05	1	22316	114.93	102.35	1	195310			11098	1713	9335	9579	11098	11098		
LDDIHPFYADLMNILYDK	18	Unmodified	_LDDIHPFYADLMNILYDK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.694241	2195.06089	-0.37097	-0.0002718	-0.69907	-0.00051221	-1.07	-0.00078401	733.027971398819	19.995	0.017771	19.995	19.986	20.004	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	560.257891192028	0	9.80258374172206						79	3	4	NaN	NaN	NaN	0.042642	1	34621	25.185	23.084	1	26528			11099	2808	9336	9580	11099	11099		
LDDLALLEDLEK	12	Unmodified	_LDDLALLEDLEK_			0	0	0	Q13523	Q13523	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.871765	1385.72898	0.92834	0.00064415	-2.4973	-0.0017328	-1.569	-0.0010887	693.869936668538	17.787	0.1596	17.787	17.708	17.867	0	480	55	1.00353128488872	0.0362808886855345	1.00353128488872	405.94859571943	0	14.6763494423384						443	19	4	NaN	NaN	NaN	0.0066565	1	15016	47.361	22.54	1	138320			11100	1677	9337	9581	11100	11100		
LDDLFLESFEITDVK	15	Unmodified	_LDDLFLESFEITDVK_			0	0	0	Q9NRX1	Q9NRX1	Q9NRX1	PNO1	RNA-binding protein PNO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.45365	1782.89275	1.5265	0.0013623	0.92412	0.00082474	2.4506	0.0021871	892.454488726466	19.428	0.07087	19.428	19.401	19.472	0	282	28	1.13599383354359	0.0179798369779736	1.13599383354359	458.519611733703	0	7.25717660320328						149	9	3	NaN	NaN	NaN	0.0026721	1	26761	62.454	58.604	1	35532			11101	3028	9338	9582	11101	11101		
LDDLFLK	7	Unmodified	_LDDLFLK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.247286	862.48002	-1.8931	-0.0008183	-1.2943	-0.00055946	-3.1874	-0.0013778	432.24671918621	11.651	0.16847	11.651	11.607	11.775	0	744	37	0.82502364452135	0.0244908762672863	0.82502364452135	335.731193870603	0	9.96620058437668						402	20	3	NaN	NaN	NaN	0.04646	1	1757	40.203	0.44141	1	196600			11102	1055	9339	9583	11102	11102		
LDDLVNWAR	9	Unmodified	_LDDLVNWAR_			0	0	0	O75251	O75251	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.288005	1100.56146	-0.10489	-5.7826E-05	-0.12394	-6.8326E-05	-0.22883	-0.00012615	551.288167123231	12.077	0.23944	12.077	11.97	12.21	0	645	46	0.892219381832517	0.0304714989453929	0.892219381832517	361.843033175748	0	12.3578346630024						599	28	4	NaN	NaN	NaN	0.0015875	1	6734	90.308	58.181	1	208240			11103	315	9340	9584	11103	11103		
LDDLVRPYVHK	11	Unmodified	_LDDLVRPYVHK_			0	0	1	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.877519	1353.74048	1.9814	0.0013431	-1.9562	-0.001326	0.025211	1.709E-05	677.875813413396	6.3919	0.17733	6.3919	6.3299	6.5072	0	456	64	1.01965166402748	0.0423247851454723	1.01965166402748	412.565883609396	0	17.1252232484456						564	21	4	NaN	NaN	NaN	0.014116	1	14025	62.271	47.123	1	159390			11104	343	9341	9585	11104	11104		
LDDNEALIEK	10	Unmodified	_LDDNEALIEK_			0	0	0	P61011	P61011	P61011	SRP54	Signal recognition particle 54 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.295693	1158.57683	0.50925	0.00029552	-1.4583	-0.00084627	-0.94909	-0.00055075	580.295404448711	6.5693	0.19507	6.5693	6.4717	6.6668	0	627	40	0.90440375274676	0.026386663985959	0.90440375274676	366.557241186116	0	10.6945849410982						406	23	4	NaN	NaN	NaN	0.00079148	1	8316	74.424	56.021	1	109960			11105	1321	9342	9586	11105	11105		
LDDPSCPRPECYR	13	Unmodified	_LDDPSCPRPECYR_			0	0	1	P41091	P41091	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.576701	1663.70827	0.49469	0.00027484	0.45951	0.00025529	0.9542	0.00053013	555.577458508675	4.7514	0.18624	4.7514	4.6982	4.8844	0	723	49	0.839303037468863	0.0326227467021474	0.839303037468863	508.428369559646	0	19.76202774906						619	22	4	NaN	NaN	NaN	0.00088434	1	23435	41.824	41.205	1	194680			11106	1027	9343	9587	11106	11106		
LDDSFVR	7	Unmodified	_LDDSFVR_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.216517	850.418482	-1.4718	-0.00062731	1.3321	0.00056775	-0.13975	-5.9564E-05	426.217019156847	6.5515	0.1596	6.5515	6.5072	6.6668	0	774	31	0.804600385996946	0.020440313348464	0.804600385996946	327.492934857397	0	8.31973029642404						161	19	2	NaN	NaN	NaN	0.030537	1	1561	58.687	35.378	1	41859			11107	2658	9344	9588	11107	11107		
LDDTVHVVIATPGR	14	Unmodified	_LDDTVHVVIATPGR_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.275457	1491.80454	-1.0115	-0.00050402	-0.15476	-7.7115E-05	-1.1663	-0.00058113	498.275351315916	9.1504	0.097529	9.1504	9.106	9.2036	0	765	43	0.810730346695089	0.0285925652531284	0.810730346695089	491.586325022536	0	17.3371012113337						306	12	3	NaN	NaN	NaN	0.001406	1	18305	40.861	28.279	1	72996			11108	847	9345	9589	11108	11108		
LDDTYIK	7	Unmodified	_LDDTYIK_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.226551	866.438549	-1.9005	-0.00082523	1.7046	0.00074019	-0.19584	-8.504E-05	434.227369513084	5.443	0.13298	5.443	5.4076	5.5405	0	765	31	0.810730346695089	0.0204289410933094	0.810730346695089	329.891130923865	0	8.31266093383755						201	16	2	NaN	NaN	NaN	0.027508	1	1805	40.203	10.893	1	61840			11109	2658	9346	9590	11109	11109		
LDDTYSFQVINK	12	Unmodified	_LDDTYSFQVINK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.861731	1441.70891	1.4437	0.0010422	1.1544	0.00083329	2.5981	0.0018755	721.861972454139	11.163	0.16848	11.163	11.119	11.287	0	468	37	1.01159370163332	0.0241772305983219	1.01159370163332	409.052981721681	0	9.77642333087698						231	20	3	NaN	NaN	NaN	0.0069543	1	16718	57.293	40.641	1	67565			11110	2900	9347	9591	11110	11110		
LDDYASAFQGHDVGFCCLGTTR	22	Unmodified	_LDDYASAFQGHDVGFCCLGTTR_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.698607	2489.07399	1.5267	0.0012683	0.063124	5.2437E-05	1.5899	0.0013207	831.033524419393	13.327	0.097548	13.327	13.283	13.38	0	513	37	0.981336640919867	0.0242341119852805	0.981336640919867	592.839266176126	0	14.6401678758441						429	12	6	NaN	NaN	NaN	1.8294E-11	1	36773	135.89	127.81	1	165920			11111	2748	9348	9592	11111	11111		
LDDYQER	7	Unmodified	_LDDYQER_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.714339	937.414125	0.39583	0.00018593	1.6605	0.00077995	2.0563	0.00096588	469.71515768347	2.6232	0.29263	2.6232	2.5789	2.8715	0	756	31	0.816857749704129	0.0204204181290417	0.816857749704129	331.99181512419	0	8.2993785426055						376	34	3	NaN	NaN	NaN	0.0092394	1	3012	63.301	31.174	1	87032			11112	1752	9349	9593	11112	11112		
LDEAVAEAHLGK	12	Unmodified	_LDEAVAEAHLGK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.830234	1251.64592	1.9119	0.0011984	0.45503	0.00028523	2.3669	0.0014836	626.830492176515	5.8598	0.18627	5.8598	5.8155	6.0017	0	477	34	1.0055473068722	0.0221762449945386	1.0055473068722	407.194288996536	0	8.98022425344914						365	22	4	NaN	NaN	NaN	5.4903E-05	1	10966	110.88	89.796	1	170290			11113	822	9350	9594	11113	11113		
LDECEEAFQGTK	12	Unmodified	_LDECEEAFQGTK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.811381	1425.60821	2.046	0.0014605	0.2591	0.00018495	2.3051	0.0016454	713.811542511202	5.9396	0.11533	5.9396	5.8953	6.0106	0	504	37	0.987393073566096	0.0242207100839708	0.987393073566096	399.309953267295	0	9.79505616420926						359	14	4	NaN	NaN	NaN	1.0107E-05	1	16241	129.69	117.09	1	164270			11114	1340	9351	9595	11114	11114		
LDEDEDEDDADLSK	14	Unmodified	_LDEDEDEDDADLSK_			0	0	0	O95218	O95218	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.823394	1607.63224	3.1128	0.0025052	-1.7767	-0.0014299	1.3361	0.0010753	804.821856532526	5.044	0.17733	5.044	5.0085	5.1859	0	453	46	1.02166545906632	0.0302027620184235	1.02166545906632	412.720169811733	0	12.2009498886445						464	21	4	NaN	NaN	NaN	2.5501E-17	1	21835	187.51	185.21	1	150790			11115	412	9352	9596	11115	11115		
LDEEAENLVATVVPTHLAAAVPEVAVYLK	29	Unmodified	_LDEEAENLVATVVPTHLAAAVPEVAVYLK_			0	0	0	Q15257	Q15257	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1021.22005	3060.63832	0.82711	0.00084466	1.5187	0.0015509	2.3458	0.0023956	1021.55609996845	19.969	0.035465	19.969	19.942	19.978	0	225	37	1.17390432875292	0.0239155091765686	1.17390432875292	708.436380844288	0	14.4327066117008						150	5	5	NaN	NaN	NaN	1.2052E-06	1	38306	61.968	61.908	1	29481			11116	1825	9353	9597	11116	11116		
LDEGWVPLEIMIK	13	Unmodified	_LDEGWVPLEIMIK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.915452	1541.81635	0.79345	0.00061247	0.19544	0.00015086	0.98888	0.00076334	771.915756901895	19.242	0.17733	19.242	19.197	19.375	0	405	49	1.05384839605172	0.0321562992894993	1.05384839605172	425.876238866847	0	12.9948518673046						569	21	5	NaN	NaN	NaN	7.563E-07	1	19783	112.93	89.97	1	267070			11117	533	9354	9598	11117	11117		
LDEGWVPLEIMIK	13	Oxidation (M)	_LDEGWVPLEIM(Oxidation (M))IK_	LDEGWVPLEIM(1)IK	LDEGWVPLEIM(46)IK	0	1	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.91291	1557.81127	0.31961	0.00024926	1.6542	0.0012901	1.9738	0.0015394	779.914928765087	17.3	0.16847	17.3	17.229	17.397	0	390	37	1.06389100039157	0.0240939446089616	1.06389100039157	429.895315701904	0	9.73584128483236						330	20	4	NaN	NaN	NaN	0.019648	1	20300	45.939	32.141	1	70052			11118	533	9354	9599	11118	11118	103	
LDEIYVAGLVAHSDLDER	18	Unmodified	_LDEIYVAGLVAHSDLDER_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.00764	2014.00073	0.68485	0.00069033	-0.091452	-9.2184E-05	0.5934	0.00059815	1008.50898784806	14.622	0.13302	14.622	14.577	14.71	0	63	76	1.28111162701928	0.0494936361753218	1.28111162701928	516.635125400601	0	19.9593465492639						906	16	5	NaN	NaN	NaN	1.057E-06	1	31871	69.224	67.636	1	248570			11119	263	9355	9600	11119	11119		
LDEIYVAGLVAHSDLDER	18	Unmodified	_LDEIYVAGLVAHSDLDER_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.340855	2014.00073	1.0942	0.0007357	-0.011073	-7.4449E-06	1.0832	0.00072825	672.6751432082	14.613	0.39018	14.613	14.48	14.87	0	510	73	0.983355730988811	0.0484816592636016	0.983355730988811	594.836189761261	0	29.3267680869321						1253	45	5	NaN	NaN	NaN	3.4729E-05	1	31872	94.63	86.255	1	490140			11120	263	9355	9600	11120	11120		
LDELYGTWR	9	Unmodified	_LDELYGTWR_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.787838	1151.56112	0.93559	0.00053964	2.4186	0.001395	3.3542	0.0019347	577.290516854512	10.702	0.30147	10.702	10.516	10.817	0	597	49	0.924688525662974	0.0324376543962731	0.924688525662974	374.805554886675	0	13.1480089974086						615	35	3	NaN	NaN	NaN	0.00014137	1	8110	86.205	68.81	1	236190			11121	988	9356	9601	11121	11121		
LDEMEFNPVQQPQLNEK	17	Unmodified	_LDEMEFNPVQQPQLNEK_			0	0	0	Q9Y2W2	Q9Y2W2	Q9Y2W2	WBP11	WW domain-binding protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.99368	2057.97281	2.0145	0.0020749	-1.4438	-0.0014871	0.57073	0.00058785	1030.99531326867	12.361	0.1596	12.361	12.263	12.423	0	198	58	1.1918274123006	0.0378272416216301	1.1918274123006	480.559090329322	0	15.2523969794153						858	19	5	NaN	NaN	NaN	2.2726E-05	1	32668	86.135	76.114	1	208620			11122	3356	9357	9602	11122	11122		
LDESFLVSWTK	11	Unmodified	_LDESFLVSWTK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.84281	1323.67107	0.45329	0.00030046	0.53433	0.00035417	0.98762	0.00065464	662.844326199729	16.049	0.11528	16.049	15.996	16.111	0	504	43	0.987393073566096	0.0282653130088721	0.987393073566096	399.605293538984	0	11.4391816230677						284	14	3	NaN	NaN	NaN	0.00085901	1	13093	54.584	41.31	1	77760			11123	1223	9358	9603	11123	11123		
LDETGNLMISEGHFASETIR	20	Unmodified	_LDETGNLMISEGHFASETIR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.691559	2219.05285	0.45451	0.00033665	-0.026715	-1.9788E-05	0.4278	0.00031686	741.025863311977	12.6	0.14187	12.6	12.564	12.706	0	582	40	0.934820374997243	0.0263318671085498	0.934820374997243	565.11942664451	0	15.9181913882728						467	17	5	NaN	NaN	NaN	2.7675E-11	1	34881	117.8	94.367	1	136790			11124	1703	9359	9604	11124	11124		
LDETGNLMISEGHFASETIR	20	Unmodified	_LDETGNLMISEGHFASETIR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.5337	2219.05285	0.69728	0.00077435	1.1709	0.0013003	1.8681	0.0020746	1111.03659369119	12.609	0.062062	12.609	12.582	12.644	0	99	37	1.25735632164274	0.0237813509420215	1.25735632164274	506.734415320208	0	9.58425925706206						108	8	3	NaN	NaN	NaN	0.026283	1	34882	18.361	17.997	1	16807			11125	1703	9359	9604	11125	11125		
LDFEEFMK	8	Unmodified	_LDFEEFMK_			0	0	0	Q6NUK1	Q6NUK1	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.746793	1057.47903	-0.3342	-0.00017704	-1.6938	-0.00089726	-2.028	-0.0010743	529.745792264001	14.923	0.15962	14.923	14.87	15.03	1.7764E-15	666	37	0.877991458330206	0.0244059657771015	0.877991458330206	356.252184630664	0	9.90291937765483						437	19	4	NaN	NaN	NaN	0.026462	1	5646	33.396	24.003	1	190370			11126	2045	9360	9605	11126	11126		
LDFEGPDAK	9	Unmodified	_LDFEGPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.24019	990.465826	0.096613	4.7943E-05	2.6598	0.0013199	2.7564	0.0013678	496.241262436796	6.7555	0.29261	6.7555	6.6225	6.9151	0	723	52	0.839303037468863	0.0346592613234649	0.839303037468863	340.850055525611	0	14.0755014806174						687	34	3	NaN	NaN	NaN	0.054143	1	4055	45.489	27.795	1	215680			11127	1584	9361	9606	11127	11127		
LDFIESDSPCSSEALSK	17	Unmodified	_LDFIESDSPCSSEALSK_			0	0	0	O43432	O43432	O43432	EIF4G3	Eukaryotic translation initiation factor 4 gamma 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.930213	1883.84587	1.9308	0.0018206	0.19306	0.00018204	2.1239	0.0020026	942.928559224459	11.163	0.070936	11.163	11.119	11.19	0	282	28	1.13599383354359	0.0179798369779736	1.13599383354359	458.329937216607	0	7.25417454738613						124	9	3	NaN	NaN	NaN	0.027638	1	29227	16.102	14.118	1	18500			11128	202	9362	9607	11128	11128		
LDFLEGDQK	9	Unmodified	_LDFLEGDQK_			0	0	0	Q99848	Q99848	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.766571	1063.51859	0.30589	0.00016297	0.19968	0.00010638	0.50557	0.00026935	532.766643286515	9.2656	0.26604	9.2656	9.1947	9.4608	0	651	34	0.888155670855968	0.0223550653870297	0.888155670855968	360.350078269607	0	9.07008740277996						547	31	4	NaN	NaN	NaN	0.00011552	1	5811	102.46	77.614	1	225190			11129	2680	9363	9608	11129	11129		
LDFLGEGQFATVYK	14	Unmodified	_LDFLGEGQFATVYK_			0	0	0	P50613	P50613	P50613	CDK7	Cyclin-dependent kinase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.406306	1586.79806	1.8922	0.0015032	-0.61559	-0.00048903	1.2766	0.0010142	794.403802389912	15.491	0.21295	15.491	15.437	15.65	0	363	73	1.08195024817156	0.0481812689892422	1.08195024817156	437.122309100555	0	19.4658743242259						581	25	4	NaN	NaN	NaN	0.0020672	1	21172	57.042	52.796	1	126620			11130	1170	9364	9609	11130	11130		
LDFLRPYTVPNK	12	Unmodified	_LDFLRPYTVPNK_			0	0	1	Q99436	Q99436	Q99436	PSMB7	Proteasome subunit beta type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.273276	1461.798	-1.5172	-0.00074082	-0.78416	-0.00038289	-2.3014	-0.0011237	488.272669171595	11.208	0.097519	11.208	11.172	11.27	0	843	28	0.757518876820989	0.0184514415745468	0.757518876820989	459.408088845204	0	11.1901389781534						172	12	3	NaN	NaN	NaN	0.040389	1	17327	21.15	6.6952	1	33796			11131	2638	9365	9610	11131	11131		
LDFNLIR	7	Unmodified	_LDFNLIR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.758352	889.502152	-1.4088	-0.000628	-1.6796	-0.00074869	-3.0884	-0.0013767	445.757677022916	13.07	0.18629	13.07	13.017	13.203	0	750	40	0.820941264895493	0.0265410084545386	0.820941264895493	333.910983684676	0	10.7953328940852						381	22	3	NaN	NaN	NaN	0.010003	1	2155	80.294	52.589	1	182490			11132	929	9366	9611	11132	11132		
LDFNTDEEK	9	Unmodified	_LDFNTDEEK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.751118	1109.48768	0.6362	0.00035357	2.2584	0.0012551	2.8947	0.0016087	555.75193411792	5.8775	0.15968	5.8775	5.8421	6.0017	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	369.216869695139	0	9.05146129734982						258	19	3	NaN	NaN	NaN	0.00016301	1	6967	67.507	45.579	1	90740			11133	1047	9367	9612	11133	11133		
LDFVCSFLQK	10	Unmodified	_LDFVCSFLQK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.820824	1255.62709	0.96094	0.00060426	1.0659	0.00067024	2.0268	0.0012745	628.820365032536	15.455	0.15979	15.455	15.393	15.553	1.7764E-15	558	40	0.951016745717027	0.0263063536302146	0.951016745717027	385.098926017802	0	10.6523345420192						378	19	4	NaN	NaN	NaN	0.00072042	1	11085	90.761	71.505	1	137300			11134	1782	9368	9613	11134	11134		
LDFYQHSWLPAR	12	Unmodified	_LDFYQHSWLPAR_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.593009	1531.7572	-0.34169	-0.00017481	-0.81567	-0.00041729	-1.1574	-0.0005921	511.592813391214	12.529	0.13302	12.529	12.467	12.6	0	696	31	0.857641857947968	0.0203637344294858	0.857641857947968	519.906594956548	0	12.3445931768825						400	16	5	NaN	NaN	NaN	0.00013973	1	19488	106.35	83.3	1	201670			11135	2949	9369	9614	11135	11135		
LDFYQHSWLPAR	12	Unmodified	_LDFYQHSWLPAR_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.885875	1531.7572	1.4989	0.0011495	1.7712	0.0013583	3.2701	0.0025078	766.885826791816	12.529	0.15961	12.529	12.476	12.635	0	396	49	1.05987478976334	0.0321429928417942	1.05987478976334	428.336621354814	0	12.9902334568787						348	19	4	NaN	NaN	NaN	0.00027057	1	19490	92.707	78.712	1	85021			11136	2949	9369	9614	11136	11136		
LDGAHAPELTK	11	Unmodified	_LDGAHAPELTK_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.306395	1150.59824	1.9669	0.0011336	-2.2085	-0.0012728	-0.24159	-0.00013923	576.305255425469	4.4765	0.15961	4.4765	4.4056	4.5652	0	606	28	0.918606045818476	0.0182474411105494	0.918606045818476	372.343840751475	0	7.3963396364702						256	19	3	NaN	NaN	NaN	0.00031085	1	8088	90.142	67.089	1	75690			11137	377	9370	9615	11137	11137		
LDGDVLMK	8	Unmodified	_LDGDVLMK_			0	0	0	Q9BRT6	Q9BRT6	Q9BRT6	LLPH	Protein LLP homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.736228	889.457904	-1.637	-0.00072968	0.45977	0.00020494	-1.1772	-0.00052474	445.736524839353	7.5181	0.22167	7.5181	7.4205	7.6422	0	777	31	0.802556497112065	0.0204431578959955	0.802556497112065	326.433369535973	0	8.31508926780754						237	26	3	NaN	NaN	NaN	0.065508	1	2147	29.102	10.699	1	77740			11138	2715	9371	9616	11138	11138		
LDGEASINNR	10	Unmodified	_LDGEASINNR_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.770177	1087.5258	1.6407	0.00089378	1.4553	0.00079281	3.096	0.0016866	544.770944805081	3.5278	0.28371	3.5278	3.4923	3.776	0	630	40	0.902373728295776	0.0263939831579142	0.902373728295776	366.0154010147	0	10.7057686045052						430	33	3	NaN	NaN	NaN	1.3123E-07	1	6397	158.61	77.293	1	105630			11139	434	9372	9617	11139	11139		
LDGEIIPHIPANQEVLNK	18	Unmodified	_LDGEIIPHIPANQEVLNK_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.365223	1999.07384	-0.31334	-0.00020911	-0.54374	-0.00036287	-0.85708	-0.00057199	667.69916077202	12.236	0.17737	12.236	12.148	12.325	0	702	52	0.853568545818287	0.034615952502899	0.853568545818287	516.35372010259	0	20.9404106293903						857	21	4	NaN	NaN	NaN	7.3999E-06	1	31626	75.012	60.063	1	240570			11140	911	9373	9618	11140	11140		
LDGFPLLR	8	Unmodified	_LDGFPLLR_			0	0	0	P09661	P09661	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.774003	929.533452	-1.3284	-0.00061873	-1.4349	-0.00066833	-2.7633	-0.0012871	465.773405719351	14.391	0.24827	14.391	14.258	14.506	0	756	34	0.816857749704129	0.0224608985391257	0.816857749704129	332.032490277548	0	9.12980023574301						380	29	2	NaN	NaN	NaN	0.019378	1	2871	60.709	40.05	1	94781			11141	609	9374	9619	11141	11141		
LDGFSVLMR	9	Unmodified	_LDGFSVLMR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.276052	1036.53755	0.45604	0.00023681	-2.1563	-0.0011197	-1.7003	-0.00088292	519.274879499644	13.797	0.21277	13.797	13.717	13.93	0	678	55	0.869855008346864	0.0366343767135493	0.869855008346864	353.042407803385	0	14.8685567585654						502	25	4	NaN	NaN	NaN	0.0011344	1	5151	84.368	64.881	1	211280			11142	3134	9375	9620	11142	11142		
LDGLVETPTGYIESLPR	17	Unmodified	_LDGLVETPTGYIESLPR_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.491098	1858.96764	1.9993	0.0018603	-0.011538	-1.0736E-05	1.9877	0.0018496	930.490889758774	15.624	0.38128	15.624	15.491	15.872	0	261	85	1.14997238118939	0.0558873329560672	1.14997238118939	464.015136533732	0	22.5506010894751						1784	44	6	NaN	NaN	NaN	6.011E-15	1	28680	199.3	172.83	1	2230400			11143	1269	9376	9621	11143	11143		
LDGMGCLEFDEER	13	Unmodified	_LDGMGCLEFDEER_			0	0	0	Q13951	Q13951	Q13951	CBFB	Core-binding factor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.829248	1569.64394	1.0705	0.00084125	1.2984	0.0010204	2.369	0.0018616	785.830471238647	12.041	0.15076	12.041	11.997	12.148	0	402	31	1.05585747106793	0.020089366798685	1.05585747106793	426.620805778862	0	8.11713899469174						278	18	4	NaN	NaN	NaN	0.00027012	1	20649	54.199	42.242	1	56635			11144	1711	9377	9622	11144	11144		
LDGNELDLSLSDLNEVPVK	19	Unmodified	_LDGNELDLSLSDLNEVPVK_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.53369	2069.05283	0.62119	0.00064326	0.60139	0.00062276	1.2226	0.001266	1036.03581591846	16.989	0.23057	16.989	16.918	17.149	0	141	133	1.2295923935727	0.087306096394725	1.2295923935727	495.768583199226	0	35.2016000916393						2114	27	5	NaN	NaN	NaN	1.691E-19	1	32869	166.48	155.99	1	1093800			11145	2474	9378	9623	11145	11145		
LDGNLLTQPGQAR	13	Unmodified	_LDGNLLTQPGQAR_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.872965	1381.73138	1.5307	0.0010591	-0.34715	-0.00024019	1.1836	0.00081888	691.872337659402	8.2277	0.088722	8.2277	8.1922	8.281	0	486	37	0.999498404980629	0.0242006280672292	0.999498404980629	404.328762021004	0	9.78992056194744						248	11	4	NaN	NaN	NaN	0.00047059	1	14886	83.775	57.918	1	77114			11146	2739	9379	9624	11146	11146		
LDGNQDLIR	9	Unmodified	_LDGNQDLIR_			0	0	0	P48735	P48735	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.277638	1042.54072	1.0073	0.0005261	3.5427	0.0018503	4.55	0.0023764	522.27944999724	6.0106	0.11522	6.0106	5.9663	6.0815	0	690	22	0.86171403876517	0.0142496650202144	0.86171403876517	349.711862066189	0	5.78298213080012						135	14	3	NaN	NaN	NaN	0.063951	1	5290	36.211	9.2638	1	48522			11147	1117	9380	9625	11147	11147		
LDHDGAILDVDEDDVEK	17	Unmodified	_LDHDGAILDVDEDDVEK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.29357	1896.85888	-0.25279	-0.00016009	1.7684	0.0011199	1.5156	0.00095981	633.629065676704	9.514	0.079781	9.514	9.4785	9.5583	0	672	28	0.873923798053065	0.0183057433537801	0.873923798053065	528.86352473749	0	11.0778994399602						169	10	3	NaN	NaN	NaN	6.352E-06	1	29528	108.5	82.031	1	37650			11148	2418	9381	9626	11148	11148		
LDHDGAILDVDEDDVEK	17	Unmodified	_LDHDGAILDVDEDDVEK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.436717	1896.85888	1.7764	0.0016866	3.2517E-05	3.0873E-08	1.7764	0.0016866	949.436865044656	9.514	0.070924	9.514	9.4962	9.5672	0	267	37	1.14597988355104	0.023954989793705	1.14597988355104	462.335736344475	0	9.66443478141889						134	9	3	NaN	NaN	NaN	0.051285	1	29529	16.759	12.513	1	20282			11149	2418	9381	9626	11149	11149		
LDHHPEWFNVYNK	13	Unmodified	_LDHHPEWFNVYNK_			0	0	0	P61457	P61457	P61457	PCBD1	Pterin-4-alpha-carbinolamine dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.938956	1697.79504	-0.13848	-7.8509E-05	0.26897	0.00015249	0.1305	7.3983E-05	567.273407660545	8.7068	0.16872	8.7068	8.6534	8.8221	0	726	43	0.837263974740672	0.0285568061062612	0.837263974740672	507.109140757537	0	17.296119078587						533	20	4	NaN	NaN	NaN	1.5183E-07	1	24430	121.8	116.3	1	190780			11150	1345	9382	9627	11150	11150		
LDHVVTIIK	9	Unmodified	_LDHVVTIIK_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.321317	1036.62808	1.2983	0.00067426	0.085936	4.4628E-05	1.3843	0.00071889	519.321323596723	6.9505	0.1509	6.9505	6.9151	7.066	0	624	40	0.906433495720521	0.0263830055416011	0.906433495720521	367.88784918172	0	10.7078866893967						329	18	3	NaN	NaN	NaN	0.00030482	1	5167	111.39	64.556	1	164540			11151	2681	9383	9628	11151	11151		
LDHYAIIK	8	Unmodified	_LDHYAIIK_			0	0	0	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.779285	971.544017	1.7251	0.00083973	0.94869	0.0004618	2.6738	0.0013015	486.779705213067	5.5405	0.46112	5.5405	5.4962	5.9573	0	639	73	0.896281965493857	0.0487713312849145	0.896281965493857	364.086910067131	0	19.8118493855901						968	53	4	NaN	NaN	NaN	0.00033265	1	3669	121.52	29.197	1	954720			11152	1395	9384	9629	11152	11152		
LDIDPETITWQR	12	Unmodified	_LDIDPETITWQR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.880456	1485.74636	1.2278	0.00091334	0.065384	4.8638E-05	1.2932	0.00096198	743.881022627662	14.063	0.23055	14.063	13.992	14.223	0	438	43	1.03173026378327	0.0281717327026458	1.03173026378327	417.077962261467	0	11.388450335758						364	27	2	NaN	NaN	NaN	2.8559E-05	1	18096	125.17	93.031	1	303340			11153	656	9385	9630	11153	11153		
LDIDPSTITWQR	12	Unmodified	_LDIDPSTITWQR_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.875173	1443.73579	1.2255	0.00088591	-0.53131	-0.00038407	0.69422	0.00050184	722.874409023812	13.753	0.15958	13.753	13.664	13.824	0	450	43	1.02367897599655	0.0281872971172881	1.02367897599655	413.934325988655	0	11.3978015640383						349	19	4	NaN	NaN	NaN	0.0041929	1	16782	64.906	51.632	1	120410			11154	2083	9386	9631	11154	11154		
LDIDSPPITAR	11	Unmodified	_LDIDSPPITAR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.327328	1196.6401	1.6793	0.0010064	0.52033	0.00031185	2.1996	0.0013183	599.327733925534	9.7268	0.48767	9.7268	9.5672	10.055	0	609	94	0.916577990479294	0.062826240481894	0.916577990479294	371.352443219081	0	25.4541109906216						2715	56	5	NaN	NaN	NaN	0.00019819	1	9362	85.622	44.597	1	4084200			11155	699	9387	9632	11155	11155		
LDIEQYR	7	Unmodified	_LDIEQYR_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.742899	935.471246	-0.7045	-0.00033023	0.44922	0.00021057	-0.25528	-0.00011966	468.743506959161	7.2343	0.16849	7.2343	7.1634	7.3319	0	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	333.661476675918	0	8.29731954107149						213	20	3	NaN	NaN	NaN	0.0057705	1	2978	92.319	50.09	1	53762			11156	1064	9388	9633	11156	11156		
LDIETGFHR	9	Unmodified	_LDIETGFHR_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	363.189212	1086.54581	-1.3756	-0.00049959	-0.76154	-0.00027658	-2.1371	-0.00077617	363.18900247066	7.456	0.053219	7.456	7.4383	7.4915	0	885	16	0.728786607772777	0.0102708288454518	0.728786607772777	443.408929960711	0	6.24898588914704						44	7	2	NaN	NaN	NaN	0.044543	1	6375	23.575	14.812	1	8636.3			11157	3359	9389	9634	11157	11157		
LDIHTLAHHLK	11	Unmodified	_LDIHTLAHHLK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.250695	1296.73025	-1.6355	-0.00070859	0.15951	6.9108E-05	-1.476	-0.00063948	433.250897866824	6.8441	0.12411	6.8441	6.7998	6.9239	0	828	28	0.767766820543916	0.0184385915537137	0.767766820543916	466.177596613164	0	11.1956626223474						203	15	3	NaN	NaN	NaN	0.049554	1	12265	37.591	32.095	1	65025			11158	1784	9390	9635	11158	11158		
LDIISEDISELQK	13	Unmodified	_LDIISEDISELQK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.901054	1501.78755	1.0323	0.0007762	0.69812	0.00052492	1.7304	0.0013011	751.902579683423	14.959	0.17736	14.959	14.897	15.074	0	429	43	1.03776581230406	0.0281678436132822	1.03776581230406	419.476482036978	0	11.3857556352082						286	21	2	NaN	NaN	NaN	5.3627E-08	1	18580	132.44	111.35	1	112500			11159	2131	9391	9636	11159	11159		
LDILDMFTEIK	11	Unmodified	_LDILDMFTEIK_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.354696	1336.69484	0.19601	0.0001312	-1.5008	-0.0010046	-1.3048	-0.00087337	669.353762035981	20.057	0.044318	20.057	20.049	20.093	0	513	49	0.981336640919867	0.0323166232596742	0.981336640919867	397.11423844864	0	13.0774605776135						161	6	5	NaN	NaN	NaN	0.0033256	1	13498	43.168	30.573	1	63246			11160	911	9392	9637	11160	11160		
LDILDQER	8	Unmodified	_LDILDQER_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.266739	1000.51892	0.33597	0.00016841	1.3105	0.00065689	1.6464	0.0008253	501.267030676354	8.7422	0.23073	8.7422	8.6891	8.9198	0	657	55	0.884090832094921	0.0366038757526872	0.884090832094921	358.989451367967	0	14.8631846382359						601	27	4	NaN	NaN	NaN	0.0042791	1	4296	79.809	36.975	1	205500			11161	1703	9393	9638	11161	11161		
LDILELLEK	9	Unmodified	_LDILELLEK_			0	0	0	O43929;CON__Q2YDI2	O43929	O43929	ORC4	Origin recognition complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.326265	1084.63798	-0.98882	-0.00053725	0.029043	1.578E-05	-0.95978	-0.00052147	543.326421590983	19.046	0.079791	19.046	19.011	19.091	0	660	28	0.882057989648486	0.0182955837794518	0.882057989648486	357.786976305285	0	7.42119189102152						143	10	3	NaN	NaN	NaN	0.0014349	1	6339	76.605	38.882	1	39173		+	11162	245	9394	9639	11162	11162		
LDILHQVAMWQK	12	Unmodified	_LDILHQVAMWQK_			0	0	0	Q9BYD3	Q9BYD3	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.602628	1480.78605	-2.6789	-0.001325	0.34514	0.00017071	-2.3337	-0.0011543	494.602848705034	14.71	0.062067	14.71	14.684	14.746	0	780	22	0.800512323802183	0.0143112053912641	0.800512323802183	485.423776303375	0	8.67819165042266						103	8	3	NaN	NaN	NaN	0.0037339	1	17933	54.584	47.837	1	19697			11163	2799	9395	9640	11163	11163		
LDILHQVAMWQK	12	Unmodified	_LDILHQVAMWQK_			0	0	0	Q9BYD3	Q9BYD3	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.602628	1480.78605	-2.1894	-0.0010829	0.034776	1.7201E-05	-2.1547	-0.0010657	494.602813679644	14.71	0.07093	14.71	14.684	14.755	0	813	22	0.778007628350577	0.0143331381547551	0.778007628350577	471.777124228338	0	8.69149151423329						138	9	4	NaN	NaN	NaN	0.0031802	1	17934	57.888	39.381	1	32828			11164	2799	9395	9640	11164	11164		
LDINLLDNVVNCLYHGEGAQQR	22	Unmodified	_LDINLLDNVVNCLYHGEGAQQR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.755333	2540.24417	0.78616	0.00066647	-0.94564	-0.00080167	-0.15948	-0.0001352	848.088816934703	19.401	0.13305	19.401	19.366	19.499	0	531	70	0.969216233931596	0.0464840904721099	0.969216233931596	585.451681552845	0	28.0785525248145						763	16	6	NaN	NaN	NaN	9.0869E-17	1	36989	142.02	130.66	1	317810			11165	135	9396	9641	11165	11165		
LDLAAYDQEGR	11	Unmodified	_LDLAAYDQEGR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.804217	1249.59388	1.2878	0.00080593	1.5686	0.00098164	2.8564	0.0017876	625.805210323152	8.7156	0.29298	8.7156	8.6268	8.9198	0	567	43	0.944945209309785	0.0283318814612601	0.944945209309785	382.66044714859	0	11.4731418517329						306	34	2	NaN	NaN	NaN	0.0031689	1	10908	74.849	65.334	1	99671			11166	2354	9397	9642	11166	11166		
LDLDFPNLPYLLDGK	15	Unmodified	_LDLDFPNLPYLLDGK_			0	0	0	P21266	P21266	P21266	GSTM3	Glutathione S-transferase Mu 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.961445	1731.90834	1.3068	0.0011329	-0.71391	-0.00061893	0.59284	0.00051397	867.461100203438	19.969	0.053204	19.969	19.933	19.986	0	306	55	1.12000185836644	0.0360067249718126	1.12000185836644	452.167485945322	0	14.5366457975128						143	7	3	NaN	NaN	NaN	0.0048975	1	25385	34.779	29.629	1	43031			11167	788	9399	9643	11167	11167		
LDLDLTADSQPPVFK	15	Unmodified	_LDLDLTADSQPPVFK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.935428	1657.8563	2.6569	0.002205	-0.53194	-0.00044147	2.1249	0.0017636	829.935084344096	14.985	0.26603	14.985	14.87	15.136	0	351	79	1.08996939197032	0.0520814035716894	1.08996939197032	440.198805564245	0	21.0337756392625						964	31	4	NaN	NaN	NaN	7.8492E-12	1	23265	189.56	140.77	1	543410			11168	1648	9400	9644	11168	11168		
LDLFANVVHVK	11	Unmodified	_LDLFANVVHVK_			0	0	0	O43837	O43837	O43837	IDH3B	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.86388	1253.71321	1.0607	0.00066597	1.1065	0.00069475	2.1672	0.0013607	627.86414508768	13.176	0.10641	13.176	13.132	13.238	0	459	31	1.01763759082241	0.02014212547595	1.01763759082241	412.082807251834	0	8.15636498199746						235	13	3	NaN	NaN	NaN	0.00023334	1	11042	72.042	57.279	1	78376			11169	239	9401	9645	11169	11169		
LDLIHESILHK	11	Unmodified	_LDLIHESILHK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.922355	1316.74524	-1.6819	-0.00073992	0.10027	4.4109E-05	-1.5817	-0.00069581	439.922413594504	9.7711	0.10641	9.7711	9.7445	9.8509	0	828	31	0.767766820543916	0.0204887515295875	0.767766820543916	466.103010708882	0	12.4385015320686						247	13	4	NaN	NaN	NaN	0.005983	1	12890	61.48	48.884	1	99909			11170	1457	9402	9646	11170	11170		
LDLIHESILHK	11	Unmodified	_LDLIHESILHK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.379894	1316.74524	1.8455	0.0012169	0.87783	0.00057882	2.7233	0.0017957	659.380356057317	9.7622	0.11526	9.7622	9.7445	9.8598	0	471	31	1.00957851518677	0.0201532590468485	1.00957851518677	408.606106550885	0	8.15661643901046						156	14	3	NaN	NaN	NaN	2.4798E-07	1	12892	118.91	104.45	1	34048			11171	1457	9402	9646	11171	11171		
LDLITVEAFK	10	Unmodified	_LDLITVEAFK_			0	0	0	O95456	O95456	O95456	PSMG1	Proteasome assembly chaperone 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.831714	1147.64888	0.32327	0.00018583	-1.1632	-0.00066862	-0.83989	-0.00048279	574.831415790993	15.207	0.1862	15.207	15.127	15.313	0	606	40	0.918606045818476	0.0263610708448411	0.918606045818476	372.355168451455	0	10.685408635914						393	22	4	NaN	NaN	NaN	0.0043715	1	8012	63.397	39.822	1	150020			11172	436	9403	9647	11172	11172		
LDLLEDR	7	Unmodified	_LDLLEDR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.23745	872.460347	-2.6204	-0.0011457	0.64199	0.0002807	-1.9784	-0.00086504	437.237487980429	9.0883	0.19508	9.0883	9.0085	9.2036	0	774	34	0.804600385996946	0.0224859096742921	0.804600385996946	327.361590700791	0	9.14866968428038						307	23	3	NaN	NaN	NaN	0.009921	1	1894	81.32	39.092	1	73647			11173	1771	9404	9648	11173	11173		
LDLLGNLPGSK	11	Unmodified	_LDLLGNLPGSK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.826963	1125.63937	1.3947	0.00078639	-0.58524	-0.00032997	0.8095	0.00045642	563.82638808478	13.549	0.16845	13.549	13.496	13.664	0	603	46	0.920633820089869	0.0304166222504839	0.920633820089869	373.26373838735	0	12.3321801595592						397	20	4	NaN	NaN	NaN	0.033675	1	7418	47.334	39.152	1	199230			11174	1074	9405	9649	11174	11174		
LDLLSDTNMVDFAMDVYK	18	Unmodified	_LDLLSDTNMVDFAMDVYK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.49467	2088.97478	0.73154	0.00076482	0.11467	0.00011989	0.84621	0.00088471	1045.99650988912	19.951	0.053212	19.951	19.942	19.995	0	123	46	1.24149774378079	0.0297572623085223	1.24149774378079	500.536967612581	0	11.9972911066279						160	7	4	NaN	NaN	NaN	1.1531E-06	1	33162	65.12	62.405	1	51737			11175	1304	9406	9650	11175	11175		
LDLMDEGTDAR	11	Unmodified	_LDLMDEGTDAR_			0	0	0	P50570;Q9UQ16;Q05193	P50570	P50570	DNM2;DNM3;DNM1	Dynamin-2;Dynamin-3;Dynamin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.28226	1234.54997	1.4796	0.0009148	0.03517	2.1745E-05	1.5148	0.00093655	618.783342865875	8.6446	0.21301	8.6446	8.5736	8.7866	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	383.531197439221	0	9.83679254860175						462	25	5	NaN	NaN	NaN	0.0052888	1	10449	65.933	58.782	1	156390			11176	1167	9407	9651	11176	11176		
LDLQQGQNLLQGLSK	15	Unmodified	_LDLQQGQNLLQGLSK_			0	0	0	Q9HCE1	Q9HCE1	Q9HCE1	MOV10	Putative helicase MOV-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.959768	1653.90498	2.0941	0.0017338	1.0051	0.00083222	3.0992	0.002566	827.960592691009	15.083	0.088654	15.083	15.038	15.127	0	315	40	1.11400032671325	0.0260138037074695	1.11400032671325	449.912924815424	0	10.506232566496						320	11	4	NaN	NaN	NaN	2.8903E-12	1	23169	130.78	116.98	1	99965			11177	2962	9408	9652	11177	11177		
LDLSNNDISSLPYSLGNLHLK	21	Unmodified	_LDLSNNDISSLPYSLGNLHLK_			0	0	0	Q9H9A6	Q9H9A6	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.741018	2312.20123	0.41888	0.00032327	0.5437	0.00041959	0.96258	0.00074286	772.409936989142	17.016	0.14186	17.016	16.954	17.096	0	405	31	1.05384839605172	0.0200949105761223	1.05384839605172	636.914900215207	0	12.1447714987995						293	17	4	NaN	NaN	NaN	0.016236	1	35739	43.177	42.921	1	60149			11178	2932	9409	9653	11178	11178		
LDLSVTEAVVAGIAK	15	Unmodified	_LDLSVTEAVVAGIAK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.429781	1484.84501	1.1052	0.00082167	0.8273	0.00061504	1.9326	0.0014367	743.43057090591	17.601	0.18621	17.601	17.566	17.752	0	297	34	1.12600091227925	0.0219874545047771	1.12600091227925	455.189510204971	0	8.8884995896002						406	22	4	NaN	NaN	NaN	2.7343E-08	1	18061	132.44	108.6	1	105660			11179	801	9410	9654	11179	11179		
LDLTENLTGSK	11	Unmodified	_LDLTENLTGSK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.816793	1189.61903	1.1427	0.00068087	-0.72501	-0.00043197	0.41774	0.0002489	595.816690940526	9.709	0.19506	9.709	9.6381	9.8332	0	603	40	0.920633820089869	0.0263574177216448	0.920633820089869	373.020765101202	0	10.6794513845475						383	23	3	NaN	NaN	NaN	4.4562E-05	1	9151	94.66	70.538	1	123910			11180	1074	9411	9655	11180	11180		
LDLVHTAALMLDK	13	Unmodified	_LDLVHTAALMLDK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.602405	1438.78539	-3.4161	-0.0016418	1.3275	0.00063798	-2.0886	-0.0010038	480.602984538355	16.732	0.062088	16.732	16.697	16.759	0	783	22	0.798467866007927	0.0143112053912641	0.798467866007927	484.314688207493	0	8.68053339653699						79	8	2	NaN	NaN	NaN	0.033024	1	16643	26.465	15.11	1	16025			11181	350	9412	9656	11181	11181		
LDLVQSMMDCLYAK	14	Unmodified	_LDLVQSMMDCLYAK_			0	0	0	Q9Y324	Q9Y324	Q9Y324	FCF1	rRNA-processing protein FCF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.898619	1685.78269	0.62392	0.00052653	1.694	0.0014295	2.3179	0.0019561	844.402070684283	19.312	0.044346	19.312	19.286	19.33	0	315	34	1.11400032671325	0.022017741139529	1.11400032671325	449.84223522606	0	8.89093984205277						123	6	3	NaN	NaN	NaN	0.0014798	1	24072	71.896	67.068	1	21262			11182	3367	9413	9657	11182	11182		
LDMEIER	7	Unmodified	_LDMEIER_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.223485	904.432418	-1.2797	-0.00057998	1.4662	0.00066453	0.18654	8.4547E-05	453.223927368789	7.1989	0.13301	7.1989	7.1545	7.2875	0	783	40	0.798467866007927	0.0265742584315366	0.798467866007927	324.688607485831	0	10.8061442826036						254	16	3	NaN	NaN	NaN	0.011873	1	2399	60.709	44.161	1	66188			11183	1737	9414	9658	11183	11183		
LDMLVASVGTGGTITGIAR	19	Unmodified	_LDMLVASVGTGGTITGIAR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.500943	1830.98733	1.794	0.0016442	-1.3995	-0.0012827	0.39443	0.00036149	917.001030456265	15.455	0.10651	15.455	15.42	15.526	0	246	37	1.1599488233373	0.0239319475635371	1.1599488233373	468.093619809958	0	9.65766052668408						276	13	4	NaN	NaN	NaN	0.0012941	1	28010	62.494	49.276	1	60736			11184	970	9415	9659	11184	11184		
LDMVPHLETDMMQGGVYGSGGER	23	Unmodified	_LDMVPHLETDMMQGGVYGSGGER_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.039865	2478.09776	0.93473	0.00077306	0.48555	0.00040157	1.4203	0.0011746	827.374218699964	14.125	0.088669	14.125	14.09	14.178	-1.7764E-15	558	37	0.951016745717027	0.0242811063417099	0.951016745717027	574.536715858132	0	14.6689184578449						314	11	5	NaN	NaN	NaN	4.6324E-11	1	36724	92.319	83.555	1	54961			11185	3283	9416	9660	11185	11185		
LDNIFLTR	8	Unmodified	_LDNIFLTR_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.282192	990.549831	-0.98183	-0.00048726	-3.6995	-0.001836	-4.6814	-0.0023233	496.280380592109	11.687	0.14187	11.687	11.633	11.775	0	714	43	0.845418525735192	0.0285250764845424	0.845418525735192	343.333252696832	0	11.5843301214001						359	17	4	NaN	NaN	NaN	0.0028804	1	4071	96.311	28.847	1	118910			11186	2691	9417	9661	11186	11186		
LDNIYSSDK	9	Unmodified	_LDNIYSSDK_			0	0	0	P04114	P04114	P04114	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.756204	1053.49785	1.3159	0.00069448	2.6557	0.0014016	3.9716	0.0020961	527.756664681981	4.5297	0.23939	4.5297	4.4854	4.7248	0	672	67	0.873923798053065	0.0447442889096176	0.873923798053065	354.618904353721	0	18.156240560749						372	28	2	NaN	NaN	NaN	0.0066088	1	5552	47.561	36.201	1	135940			11187	507	9418	9662	11187	11187		
LDNLLLDTEGFVK	13	Unmodified	_LDNLLLDTEGFVK_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.900857	1475.78716	0.77031	0.00056918	-1.7414	-0.0012867	-0.9711	-0.00071755	738.901029902477	16.581	0.14187	16.581	16.528	16.67	0	426	52	1.03977710643793	0.0341731416799977	1.03977710643793	420.357088326865	0	13.8153862463818						311	17	3	NaN	NaN	NaN	0.030121	1	17776	36.46	18.362	1	85280			11188	1883	9419	9663	11188	11188		
LDNLMLELDGTENK	14	Unmodified	_LDNLMLELDGTENK_			0	0	0	P09104	P09104	P09104	ENO2	Gamma-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.895445	1603.77634	1.3928	0.0011183	0.1369	0.00010991	1.5297	0.0012282	802.896141656177	14.099	0.133	14.099	14.045	14.178	0	384	31	1.06790610341098	0.0200727492241548	1.06790610341098	431.408763967772	0	8.10891510458487						309	16	4	NaN	NaN	NaN	6.612E-08	1	21704	162.23	97.32	1	78945			11189	596	9420	9664	11189	11189		
LDNLTCHLLK	10	Unmodified	_LDNLTCHLLK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	409.556907	1225.64889	-1.8764	-0.00076849	-1.7278	-0.00070763	-3.6042	-0.0014761	409.556326999895	8.5382	0.0532	8.5382	8.5116	8.5648	0	861	19	0.745211914437924	0.0123121104560218	0.745211914437924	452.758633496659	0	7.48030754410695						92	7	3	NaN	NaN	NaN	0.038619	1	10170	17.47	11.722	1	17489			11190	3048	9421	9665	11190	11190		
LDNLVAILDINR	12	Unmodified	_LDNLVAILDINR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.933031	1367.77726	-2.8627	-0.0013081	1.175	0.00053691	-1.6876	-0.00077114	456.933670746566	17.477	0.12416	17.477	17.415	17.539	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	483.312843410163	0	9.92757796234065						189	15	3	NaN	NaN	NaN	0.043402	1	14438	25.613	12.439	1	53645			11191	888	9422	9666	11191	11191		
LDNLVAILDINR	12	Unmodified	_LDNLVAILDINR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.895909	1367.77726	1.2894	0.00088314	0.75232	0.00051526	2.0418	0.0013984	684.89679527338	17.486	0.27486	17.486	17.424	17.699	0	423	127	1.04178812298108	0.0846087815290922	1.04178812298108	421.478880236561	0	34.2303907199654						2205	32	5	NaN	NaN	NaN	2.7942E-07	1	14439	157.77	134.71	1	2369500			11192	888	9422	9666	11192	11192		
LDNMNVSR	8	Unmodified	_LDNMNVSR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.732009	947.449465	0.27062	0.00012847	3.9127	0.0018575	4.1833	0.0019859	474.734238788147	3.6696	0.17731	3.6696	3.6076	3.7849	0	753	40	0.81889964927511	0.0265446998138166	0.81889964927511	332.770750334943	0	10.7867913758161						311	21	3	NaN	NaN	NaN	0.060086	1	3192	34.781	15.294	1	105970			11193	2149	9423	9667	11193	11193		
LDNNLDSVSLLIDHVCSR	18	Unmodified	_LDNNLDSVSLLIDHVCSR_			0	0	0	Q9H7D7	Q9H7D7	Q9H7D7	WDR26	WD repeat-containing protein 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.680994	2069.02115	0.65908	0.00045521	0.94495	0.00065266	1.604	0.0011079	691.015526441047	15.783	0.10644	15.783	15.739	15.845	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	602.05125428981	0	9.76029908272892						245	13	4	NaN	NaN	NaN	3.4729E-05	1	32868	73.262	57.734	1	59660			11194	2916	9424	9668	11194	11194		
LDNNWGR	7	Unmodified	_LDNNWGR_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.711934	873.409314	-1.1722	-0.0005131	0.29411	0.00012874	-0.87812	-0.00038436	437.711906090881	4.2637	0.28375	4.2637	4.2194	4.5031	0	825	34	0.769815552739974	0.0225329182891512	0.769815552739974	313.203684512157	0	9.16764152900572						551	33	4	NaN	NaN	NaN	0.01214	1	1905	64.547	46.145	1	184040			11195	745	9425	9669	11195	11195		
LDNVLLDSEGHIK	13	Unmodified	_LDNVLLDSEGHIK_			0	0	0	P41743	P41743	P41743	PRKCI	Protein kinase C iota type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.888281	1451.76201	1.9312	0.0014038	2.2339	0.0016238	4.1651	0.0030276	726.889592487061	9.7534	0.079822	9.7534	9.7268	9.8066	0	387	28	1.06589869032374	0.0180692111077525	1.06589869032374	430.983641566406	0	7.30607371427209						122	10	3	NaN	NaN	NaN	0.00010402	1	17035	97.175	64.626	1	26503			11196	1038	9426	9670	11196	11196		
LDNVPHTPSSYIETLPK	17	Unmodified	_LDNVPHTPSSYIETLPK_			0	0	0	Q99733	Q99733	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	637.666791	1909.97854	0.6064	0.00038668	-0.29774	-0.00018986	0.30867	0.00019683	638.000910260835	10.773	0.16846	10.773	10.684	10.853	0	666	52	0.877991458330206	0.0345823239613182	0.877991458330206	531.298642342388	0	20.9267887464832						670	20	4	NaN	NaN	NaN	7.3287E-05	1	29840	74.62	58.489	1	167820			11197	2670	9427	9671	11197	11197		
LDNWLNELETYCTR	14	Unmodified	_LDNWLNELETYCTR_			0	0	0	Q9NP72	Q9NP72	Q9NP72	RAB18	Ras-related protein Rab-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.922526	1825.8305	0.60539	0.00055328	0.72945	0.00066666	1.3348	0.0012199	914.425808586599	17.034	0.133	17.034	16.972	17.105	0	306	37	1.12000185836644	0.0239978708876349	1.12000185836644	451.982740278646	0	9.68446914942319						382	16	5	NaN	NaN	NaN	1.0965E-06	1	27869	108.91	92.154	1	76329			11198	2976	9428	9672	11198	11198		
LDPDMAFCANIR	12	Unmodified	_LDPDMAFCANIR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.828854	1421.64316	1.1105	0.0007905	0.90557	0.00064461	2.0161	0.0014351	711.829869639481	12.245	0.1419	12.245	12.201	12.343	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.216279583793	0	8.15599711337268						292	17	3	NaN	NaN	NaN	0.00092791	1	16132	78.932	70.458	1	64041			11199	1531	9429	9673	11199	11199		
LDPETLESLGLIK	13	Unmodified	_LDPETLESLGLIK_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.403232	1426.79191	0.45202	0.00032292	-0.18232	-0.00013025	0.2697	0.00019268	714.402799693756	16.697	0.14189	16.697	16.617	16.759	0	456	40	1.01965166402748	0.0261829569110703	1.01965166402748	412.352309517879	0	10.5885207009244						397	17	3	NaN	NaN	NaN	0.00080684	1	16298	61.577	48.982	1	98927			11200	2328	9430	9674	11200	11200		
LDPFESSDPFSSSSVSSK	18	Unmodified	_LDPFESSDPFSSSSVSSK_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.93381	1901.85307	1.9021	0.0018106	-0.373	-0.00035507	1.5291	0.0014556	951.933260522426	13.336	0.10645	13.336	13.292	13.398	0	258	49	1.15196821829984	0.031926818196472	1.15196821829984	464.742817776774	0	12.8803548705311						367	13	4	NaN	NaN	NaN	1.2715E-06	1	29634	94.63	80.236	1	87091			11201	3170	9431	9675	11201	11201		
LDPGSEETQTLVR	13	Unmodified	_LDPGSEETQTLVR_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.867545	1443.72054	1.9175	0.0013861	0.068626	4.9607E-05	1.9861	0.0014357	722.868904134669	7.527	0.26606	7.527	7.4649	7.7309	0	486	70	0.999498404980629	0.0463749432889504	0.999498404980629	404.156720444374	0	18.7521509759881						901	31	4	NaN	NaN	NaN	3.9529E-08	1	16780	162.21	127.42	1	1636400			11202	859	9432	9676	11202	11202		
LDPHLVLDQLR	11	Unmodified	_LDPHLVLDQLR_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.254105	1317.74048	-2.3337	-0.0010274	-0.42163	-0.00018562	-2.7553	-0.001213	440.253734149504	13.274	0.29267	13.274	13.185	13.478	0	813	97	0.778007628350577	0.0654546077244867	0.778007628350577	472.316399157305	0	39.7364800833968						1085	34	5	NaN	NaN	NaN	0.00040629	1	12914	102.55	85.076	1	644770			11203	972	9433	9677	11203	11203		
LDPHLVLDQLR	11	Unmodified	_LDPHLVLDQLR_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.877519	1317.74048	1.012	0.00066782	0.49309	0.00032538	1.5051	0.0009932	659.878071126163	13.274	0.19511	13.274	13.185	13.38	0	495	43	0.993446994398923	0.0282496839404589	0.993446994398923	402.074053947965	0	11.4333880002942						665	23	4	NaN	NaN	NaN	1.7188E-07	1	12915	159.11	128.52	1	458130			11204	972	9433	9677	11204	11204		
LDPHNHVLYSNR	12	Unmodified	_LDPHNHVLYSNR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.870756	1463.72696	3.1656	0.00232	-2.5354	-0.0018581	0.63022	0.00046187	732.869092013689	3.7494	0.1862	3.7494	3.714	3.9002	0	480	85	1.00353128488872	0.0564447681024964	1.00353128488872	405.734819547478	0	22.8210202764183						751	22	4	NaN	NaN	NaN	2.09E-05	1	17391	93.162	76.51	1	216250			11205	934	9434	9678	11205	11205		
LDPHNHVLYSNR	12	Unmodified	_LDPHNHVLYSNR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.916263	1463.72696	2.3439	0.001146	0.67794	0.00033146	3.0218	0.0014774	488.916653833875	3.7494	0.31032	3.7494	3.6874	3.9977	0	678	79	0.869855008346864	0.0529383935071229	0.869855008346864	527.52941563046	0	32.1048445123075						826	36	5	NaN	NaN	NaN	0.00040389	1	17392	103.69	80.633	1	969770			11206	934	9434	9678	11206	11206		
LDPIQPSDVLSLLDNR	16	Unmodified	_LDPIQPSDVLSLLDNR_			0	0	0	Q6ZRP7	Q6ZRP7	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.983441	1793.95233	1.104	0.0009914	-0.71081	-0.00063829	0.39322	0.00035311	897.982881813669	19.525	0.097532	19.525	19.472	19.57	0	243	31	1.16194328902838	0.0199405477396462	1.16194328902838	468.971246430896	0	8.04819272702753						182	12	4	NaN	NaN	NaN	0.0002217	1	27083	57.279	50.139	1	36661			11207	2099	9435	9679	11207	11207		
LDPNFLLK	8	Unmodified	_LDPNFLLK_			0	0	0	Q9BXW9	Q9BXW9	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.28166	958.548768	-0.88169	-0.00042346	-0.54474	-0.00026163	-1.4264	-0.00068509	480.281517002562	13.008	0.17732	13.008	12.901	13.079	0	732	70	0.833184998970724	0.0469180325975247	0.833184998970724	338.519748683818	0	19.0626098924895						308	21	3	NaN	NaN	NaN	0.055936	1	3416	31.952	10.677	1	75488			11208	2791	9436	9680	11208	11208		
LDPSIFESLQK	11	Unmodified	_LDPSIFESLQK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.84281	1275.67107	1.207	0.00077109	-1.5086	-0.00096374	-0.30156	-0.00019265	638.841820877332	14.24	0.23939	14.24	14.169	14.409	0	564	55	0.946969335010767	0.0364166254573408	0.946969335010767	383.394459538272	0	14.7438062873135						746	28	5	NaN	NaN	NaN	2.2682E-07	1	11653	143.39	107.18	1	369890			11209	3331	9437	9681	11209	11209		
LDPSPQTIYK	10	Unmodified	_LDPSPQTIYK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.311146	1160.60774	0.45093	0.00026213	-1.8016	-0.0010473	-1.3507	-0.00078518	581.309911023366	7.0481	0.21289	7.0481	6.9417	7.1545	0	630	58	0.902373728295776	0.0385544403778527	0.902373728295776	365.726939656	0	15.6258953994281						416	25	2	NaN	NaN	NaN	0.04497	1	8359	36.24	20.659	1	135360			11210	1457	9438	9682	11210	11210		
LDPTGTFEK	9	Unmodified	_LDPTGTFEK_			0	0	0	Q16698	Q16698	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.25584	1006.49713	-0.34899	-0.00017598	0.38176	0.00019251	0.032776	1.6527E-05	504.255989574771	6.5781	0.26603	6.5781	6.4274	6.6934	0	732	40	0.833184998970724	0.0265151904858787	0.833184998970724	338.291632072692	0	10.7657567950301						448	31	3	NaN	NaN	NaN	0.0025252	1	4422	65.156	45.669	1	114880			11211	1900	9439	9683	11211	11211		
LDPVEQGQEDTVAPEVAAEK	20	Unmodified	_LDPVEQGQEDTVAPEVAAEK_			0	0	0	Q9Y232	Q9Y232	Q9Y232	CDYL	Chromodomain Y-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.01841	2124.02226	0.60753	0.00064581	0.59099	0.00062823	1.1985	0.001274	1063.52041336853	9.2923	0.053239	9.2923	9.2745	9.3278	0	147	22	1.22562176648663	0.0139019612720204	1.22562176648663	494.082371731434	0	5.60426893909397						80	7	2	NaN	NaN	NaN	5.9746E-11	1	33670	86.766	77.253	1	15451			11212	3326	9440	9684	11212	11212		
LDQAVLDLQR	10	Unmodified	_LDQAVLDLQR_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.827495	1169.64044	1.1166	0.00065414	0.26109	0.00015295	1.3777	0.00080709	585.828256488156	9.6913	0.133	9.6913	9.6381	9.7711	0	597	46	0.924688525662974	0.030408192841195	0.924688525662974	374.737000309267	0	12.3231495296919						195	16	3	NaN	NaN	NaN	0.020454	1	8607	40.386	27.112	1	58990			11213	2886	9441	9685	11213	11213		
LDQCFQLR	8	Unmodified	_LDQCFQLR_			0	0	0	O75962;O60229	O75962	O75962	TRIO;KALRN	Triple functional domain protein;Kalirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.268758	1078.52296	0.73234	0.00039566	-1.8623	-0.0010062	-1.13	-0.0006105	540.267782325951	7.128	0.15969	7.128	7.0569	7.2166	0	630	61	0.902373728295776	0.0406427674647416	0.902373728295776	366.053635683205	0	16.4869968264627						308	19	3	NaN	NaN	NaN	0.069411	1	6170	33.813	11.427	1	89136			11214	374	9442	9686	11214	11214		
LDQEDALLGSYPVDDGCR	18	Unmodified	_LDQEDALLGSYPVDDGCR_			0	0	0	Q99426	Q99426	Q99426	TBCB	Tubulin-folding cofactor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.95729	2021.90003	1.6948	0.0017151	0.51982	0.00052604	2.2146	0.0022411	1012.45909257637	12.485	0.16848	12.485	12.431	12.6	0	186	46	1.1997861197946	0.0298431118865883	1.1997861197946	483.825966869968	0	12.0345386771178						536	20	4	NaN	NaN	NaN	0.00012088	1	32013	74.733	68.528	1	103150			11215	2637	9443	9687	11215	11215		
LDQETAQWLR	10	Unmodified	_LDQETAQWLR_			0	0	0	Q96G03	Q96G03	Q96G03	PGM2	Phosphoglucomutase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.322576	1258.6306	1.6514	0.0010409	-0.29649	-0.00018688	1.3549	0.00085404	630.321621620273	9.6913	0.22166	9.6913	9.6381	9.8598	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.366170867066	0	8.99459018658223						388	26	3	NaN	NaN	NaN	6.1368E-08	1	11171	138.26	110.16	1	129110			11216	2532	9444	9688	11216	11216		
LDQLDGSFDDPNTVVAK	17	Unmodified	_LDQLDGSFDDPNTVVAK_			0	0	0	Q9UJC3	Q9UJC3	Q9UJC3	HOOK1	Protein Hook homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.446888	1832.87922	1.9854	0.0018215	0.11357	0.0001042	2.099	0.0019257	917.446861474842	11.11	0.044343	11.11	11.092	11.137	0	243	34	1.16194328902838	0.0219421415899306	1.16194328902838	468.894835948817	0	8.85461190604195						86	6	2	NaN	NaN	NaN	0.0032534	1	28046	45.183	40.367	1	16057			11217	3247	9445	9689	11217	11217		
LDQLIYIPLPDEK	13	Unmodified	_LDQLIYIPLPDEK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.932157	1555.84976	0.91118	0.00070974	0.67419	0.00052515	1.5854	0.0012349	778.932911319833	16.83	0.32812	16.83	16.741	17.069	0	420	67	1.04379886199097	0.0442149235181339	1.04379886199097	421.781205858834	0	17.8664917519291						1368	38	5	NaN	NaN	NaN	3.3593E-11	1	20242	175.54	135.15	1	1309300			11218	1265	9446	9690	11218	11218		
LDQPFIDCIR	10	Unmodified	_LDQPFIDCIR_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.821355	1275.62816	0.23511	0.00015019	2.8647	0.00183	3.0998	0.0019802	638.823737979855	12.006	0.18623	12.006	11.899	12.086	0	543	49	0.961130371139249	0.0323658503377906	0.961130371139249	389.12788518091	0	13.1037945238353						352	21	4	NaN	NaN	NaN	0.033048	1	11647	50.834	34.182	1	132870			11219	1942	9447	9691	11219	11219		
LDQPMTEIVSR	11	Unmodified	_LDQPMTEIVSR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.83192	1287.64929	1.2792	0.00082486	0.51204	0.00033018	1.7912	0.001155	644.833182003373	9.3189	0.29264	9.3189	9.2213	9.514	0	513	49	0.981336640919867	0.0323032171840146	0.981336640919867	397.268972585968	0	13.0771290572475						886	34	4	NaN	NaN	NaN	0.0011823	1	11993	85.622	59.766	1	690500			11220	804	9448	9692	11220	11220		
LDQPMTEIVSR	11	Oxidation (M)	_LDQPM(Oxidation (M))TEIVSR_	LDQPM(1)TEIVSR	LDQPM(61)TEIVSR	0	1	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.829377	1303.6442	2.1315	0.0013915	-0.14976	-9.7769E-05	1.9818	0.0012937	652.829690735327	6.0993	0.22169	6.0993	6.0372	6.2589	0	522	28	0.975277694896658	0.0181818689972096	0.975277694896658	394.764749973819	0	7.35950489414273						240	26	2	NaN	NaN	NaN	0.036647	1	12461	60.547	39.459	1	99296			11221	804	9448	9693	11221	11221	268	
LDQWLTTMLLR	11	Unmodified	_LDQWLTTMLLR_			0	0	0	P54920;Q9H115	P54920	P54920	NAPA;NAPB	Alpha-soluble NSF attachment protein;Beta-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.38158	1388.74861	0.549	0.00038176	-0.21834	-0.00015183	0.33066	0.00022993	695.883532065123	18.488	0.088731	18.488	18.452	18.541	0	474	52	1.00756305028564	0.0342865984735948	1.00756305028564	407.570761577511	0	13.8693206820394						277	11	3	NaN	NaN	NaN	0.0033256	1	15113	36.514	31.363	1	72650			11222	1260	9449	9694	11222	11222		
LDRETEELHHDR	12	Unmodified	_LDRETEELHHDR_			0	0	1	O60869	O60869	O60869	EDF1	Endothelial differentiation-related factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.249971	1548.72808	-0.37349	-0.00019319	2.6678	0.0013799	2.2943	0.0011867	517.2513485751	2.1	0.16843	2.1	2.0646	2.233	0	771	22	0.806643990516186	0.0143052324654583	0.806643990516186	488.943495166302	0	8.67104998371315						168	20	3	NaN	NaN	NaN	0.00040316	1	19996	84.999	73.644	1	33622			11223	289	9450	9695	11223	11223		
LDSDAAGVFCIR	12	Unmodified	_LDSDAAGVFCIR_			0	0	0	Q3B726	Q3B726	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.321719	1322.62889	7.2344E-05	4.7915E-08	4.0833	0.0027045	4.0834	0.0027045	662.325359199396	12.006	0.079802	12.006	11.97	12.05	0	537	28	0.965173861991602	0.0181919339867516	0.965173861991602	390.616179438272	0	7.36247015209784						190	10	4	NaN	NaN	NaN	0.033665	1	13063	40.533	35.704	1	36913			11224	1930	9451	9696	11224	11224		
LDSHFAGLFTHR	12	Unmodified	_LDSHFAGLFTHR_			0	0	0	Q96LD4	Q96LD4	Q96LD4	TRIM47	Tripartite motif-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.573837	1399.69968	-1.4171	-0.0006626	0.10008	4.6795E-05	-1.317	-0.00061581	467.573766128395	9.7711	0.088664	9.7711	9.7445	9.8332	0	798	22	0.788241307691771	0.0143211685838921	0.788241307691771	478.238660990715	0	8.68888298614894						166	11	3	NaN	NaN	NaN	0.00098639	1	15442	87.942	83.414	1	41168			11225	2581	9452	9697	11225	11225		
LDSLQDIGMDHQALLK	16	Unmodified	_LDSLQDIGMDHQALLK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.645221	1795.91383	-0.16717	-0.00010024	0.84071	0.00050413	0.67355	0.00040389	599.645515088758	12.423	0.08866	12.423	12.396	12.485	0	621	28	0.908462957275599	0.0182651557513902	0.908462957275599	549.989321892535	0	11.0578428603128						239	11	4	NaN	NaN	NaN	0.0010879	1	27112	77.157	62.795	1	77801			11226	1467	9453	9698	11226	11226		
LDSLQDIGMDHQALLK	16	Unmodified	_LDSLQDIGMDHQALLK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.964194	1795.91383	1.5347	0.0013796	0.51145	0.00045978	2.0462	0.0018394	898.96519462099	12.431	0.062107	12.431	12.396	12.458	0	231	31	1.16991841121525	0.0199350677133709	1.16991841121525	472.186120411452	0	8.04591345300605						210	8	4	NaN	NaN	NaN	1.4758E-06	1	27115	104.04	94.78	1	54288			11227	1467	9453	9698	11227	11227		
LDSPAGTALSPSGHTK	16	Unmodified	_LDSPAGTALSPSGHTK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.894094	1537.77364	3.3984	0.0026164	-2.9842	-0.0022975	0.41425	0.00031893	769.892448732202	5.1149	0.21281	5.1149	5.0085	5.2213	0	417	46	1.04580932352505	0.0301569310517751	1.04580932352505	422.637426440957	0	12.1871620785702						641	25	4	NaN	NaN	NaN	1.06E-08	1	19664	123.92	116.36	1	170760			11228	938	9454	9699	11228	11228		
LDSVIEFSIPDSLLIR	16	Unmodified	_LDSVIEFSIPDSLLIR_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.006384	1815.99822	1.4585	0.0013257	-0.43825	-0.00039838	1.0202	0.00092737	909.507374008723	19.889	0.062071	19.889	19.871	19.933	0	279	52	1.13799159301878	0.03395725115354	1.13799159301878	459.261342809968	0	13.7041897836347						353	8	5	NaN	NaN	NaN	2.2047E-06	1	27638	97.175	88.369	1	121450			11229	1257	9455	9700	11229	11229		
LDTAMWLSR	9	Unmodified	_LDTAMWLSR_			0	0	0	P57088	P57088	P57088	TMEM33	Transmembrane protein 33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.778959	1091.54336	-0.35927	-0.00019644	-0.76693	-0.00041934	-1.1262	-0.00061578	546.778337474607	12.077	0.22169	12.077	11.961	12.183	0	654	31	0.886123392477847	0.0203185572291886	0.886123392477847	359.407497307118	0	8.24111163820419						282	26	3	NaN	NaN	NaN	0.001557	1	6492	76.605	37.28	1	74492			11230	1293	9456	9701	11230	11230		
LDTDDLDEIEK	11	Unmodified	_LDTDDLDEIEK_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.306455	1304.59836	1.6243	0.0010612	0.89683	0.00058591	2.5212	0.0016471	653.306910200463	9.6647	0.20393	9.6647	9.6204	9.8243	0	516	37	0.979317271586824	0.024237464198638	0.979317271586824	396.39681154986	0	9.8105627329806						318	24	2	NaN	NaN	NaN	1.8231E-07	1	12490	106.35	82.232	1	230620			11231	3058	9457	9702	11231	11231		
LDTETEGVPSTAIR	14	Unmodified	_LDTETEGVPSTAIR_			0	0	0	P24941	P24941	P24941	CDK2	Cyclin-dependent kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.880652	1487.74675	2.6863	0.002001	-4.4399	-0.0033072	-1.7537	-0.0013063	744.877278104397	7.6865	0.088743	7.6865	7.66	7.7487	0	447	34	1.02569221487577	0.0221425729106015	1.02569221487577	414.631947530471	0	8.95104593376487						195	11	3	NaN	NaN	NaN	0.0062342	1	18167	48.701	43.205	1	55955			11232	834	9458	9703	11232	11232		
LDTHPAMVTVLEMGAAR	17	Unmodified	_LDTHPAMVTVLEMGAAR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.642935	1810.90697	-1.1099	-0.0006711	-0.99048	-0.00059889	-2.1004	-0.00127	604.976519877299	13.442	0.097565	13.442	13.398	13.496	0	720	37	0.841341816837976	0.024467056718703	0.841341816837976	509.321479922596	0	14.8115751385739						309	12	4	NaN	NaN	NaN	9.005E-07	1	27495	97.175	83.377	1	87829			11233	1608	9459	9704	11233	11233		
LDTIFFAK	8	Unmodified	_LDTIFFAK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.768386	953.522219	-0.48642	-0.0002324	-2.2456	-0.0010729	-2.732	-0.0013053	477.76733478379	12.751	0.22168	12.751	12.635	12.857	0	738	40	0.829104889055312	0.0265225632029411	0.829104889055312	336.88713080346	0	10.7768152581672						404	26	3	NaN	NaN	NaN	0.017666	1	3315	42.835	23.348	1	125480			11234	3434	9460	9705	11234	11234		
LDTMNTTCVDR	11	Unmodified	_LDTMNTTCVDR_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.294844	1324.57514	1.3071	0.00086699	1.1578	0.00076799	2.4649	0.001635	663.295699146317	5.2568	0.097571	5.2568	5.2213	5.3189	0	528	28	0.971237000454584	0.0181843844613631	0.971237000454584	393.064036802535	0	7.35930319768215						232	12	4	NaN	NaN	NaN	0.0054062	1	13121	74.424	63.722	1	79666			11235	1583	9461	9706	11235	11235		
LDVATDNFFQNPELYIR	17	Unmodified	_LDVATDNFFQNPELYIR_			0	0	0	Q96GG9	Q96GG9	Q96GG9	DCUN1D1	DCN1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.01273	2054.01091	1.1044	0.0011354	0.02223	2.2853E-05	1.1267	0.0011582	1028.51405626016	17.912	0.10638	17.912	17.867	17.974	0	234	31	1.16792504164217	0.0199350677133709	1.16792504164217	470.927450821251	0	8.03816194146049						332	13	5	NaN	NaN	NaN	5.15E-07	1	32596	82.437	76.409	1	91408			11236	2542	9462	9707	11236	11236		
LDVFQSYQSATHEQTK	16	Unmodified	_LDVFQSYQSATHEQTK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.452505	1880.89046	1.5166	0.0014278	-0.7061	-0.00066476	0.81047	0.00076302	941.450833089399	9.31	0.10645	9.31	9.2479	9.3544	0	240	43	1.16393748060522	0.027932123570007	1.16393748060522	469.609524423886	0	11.2696699646098						156	13	3	NaN	NaN	NaN	0.044754	1	29159	15.548	14.278	1	25926			11237	1668	9463	9708	11237	11237		
LDVGNFSWGSECCTR	15	Unmodified	_LDVGNFSWGSECCTR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.377428	1786.7403	2.5882	0.0023148	-0.50359	-0.0004504	2.0846	0.0018644	894.377589743837	13.008	0.1862	13.008	12.946	13.132	0	333	58	1.10198982404297	0.0380620944866981	1.10198982404297	444.787233686541	0	15.3626951408165						915	22	6	NaN	NaN	NaN	3.0228E-24	1	26878	202.24	187.79	1	668130			11238	1370	9464	9709	11238	11238		
LDVQFSGLTK	10	Unmodified	_LDVQFSGLTK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.305864	1106.59717	0.53413	0.00029607	-1.2868	-0.0007133	-0.75271	-0.00041723	554.305066017724	11.172	0.16849	11.172	11.137	11.305	0	639	52	0.896281965493857	0.0345200008308083	0.896281965493857	363.466116776494	0	13.9987762067508						457	20	4	NaN	NaN	NaN	0.00048283	1	6900	74.424	56.021	1	282260			11239	792	9465	9710	11239	11239		
LDVTLGPVPEIGGSEAPAPQNK	22	Unmodified	_LDVTLGPVPEIGGSEAPAPQNK_			0	0	0	Q99848	Q99848	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1095.07606	2188.13756	1.2847	0.0014069	-0.36835	-0.00040337	0.91636	0.0010035	1095.57739141766	14.214	0.19505	14.214	14.143	14.338	0	111	112	1.24942920585258	0.0733510606084935	1.24942920585258	503.583930912585	0	29.564232422938						1705	23	5	NaN	NaN	NaN	4.5614E-23	1	34555	182.22	176.88	1	493260			11240	2680	9466	9711	11240	11240		
LDVTSVEDYK	10	Unmodified	_LDVTSVEDYK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.790244	1167.56593	1.3786	0.00080618	0.98631	0.00057678	2.3649	0.001383	584.790368005368	9.1238	0.29263	9.1238	8.9642	9.2568	0	603	100	0.920633820089869	0.0669351908119623	0.920633820089869	373.101523430014	0	27.126552509861						1126	34	5	NaN	NaN	NaN	5.2448E-10	1	8534	138.26	73.103	1	956470			11241	1113	9467	9712	11241	11241		
LDWESFK	7	Unmodified	_LDWESFK_			0	0	0	Q9UEE9	Q9UEE9	Q9UEE9	CFDP1	Craniofacial development protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.726718	923.438883	-2.4842	-0.0011495	-0.22485	-0.00010405	-2.709	-0.0012535	462.726689508717	11.571	0.15969	11.571	11.518	11.678	0	798	28	0.788241307691771	0.0184129317501174	0.788241307691771	320.431406175738	0	7.48512105992688						272	19	3	NaN	NaN	NaN	0.02927	1	2756	46.835	23.526	1	75776			11242	3198	9468	9713	11242	11242		
LDYDEDASAMLK	12	Unmodified	_LDYDEDASAMLK_			0	0	0	P50502;Q8NFI4	P50502	P50502	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.81085	1369.60715	1.72	0.0011796	1.931	0.0013243	3.651	0.0025039	685.812072143987	10.489	0.2217	10.489	10.436	10.658	0	492	55	0.995464410099171	0.0363109867512514	0.995464410099171	402.732188744908	0	14.6902320378907						620	26	5	NaN	NaN	NaN	1.1705E-05	1	14465	133.76	126.61	1	362590			11243	1165	9469	9714	11243	11243		
LDYDEDASAMLK	12	Oxidation (M)	_LDYDEDASAM(Oxidation (M))LK_	LDYDEDASAM(1)LK	LDYDEDASAM(63)LK	0	1	0	P50502;Q8NFI4	P50502	P50502	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.808307	1385.60206	1.6213	0.0011249	2.688	0.001865	4.3093	0.0029898	693.81012472124	7.2964	0.15962	7.2964	7.2166	7.3762	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.053441582129	0	9.79506392576593						291	19	4	NaN	NaN	NaN	0.017553	1	14995	63.212	58.684	1	81760			11244	1165	9469	9715	11244	11244	421	
LDYFLLSHSLLPALCDSK	18	Unmodified	_LDYFLLSHSLLPALCDSK_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.030964	2091.07106	-0.56945	-0.0003975	-0.81936	-0.00057194	-1.3888	-0.00096943	698.364906731513	18.665	0.1064	18.665	18.612	18.718	0	660	67	0.882057989648486	0.0446884460712992	0.882057989648486	533.426231928402	0	27.0254219998036						566	13	5	NaN	NaN	NaN	0.00035972	1	33202	49.487	38.728	1	130920			11245	866	9470	9716	11245	11245		
LDYFLLSHSLLPALCDSK	18	Unmodified	_LDYFLLSHSLLPALCDSK_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.030964	2091.07106	0.37609	0.00026253	0.0155	1.082E-05	0.39159	0.00027334	698.365782519204	18.665	0.18618	18.665	18.568	18.754	0	519	31	0.97729762293174	0.0202006798599824	0.97729762293174	591.022576427399	0	12.2163991564991						499	22	5	NaN	NaN	NaN	1.585E-10	1	33203	124.62	118.1	1	161370			11246	866	9470	9716	11246	11246		
LDYFLLSHSLLPALCDSK	18	Unmodified	_LDYFLLSHSLLPALCDSK_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.54281	2091.07106	0.35406	0.00037054	0.40447	0.00042329	0.75853	0.00079383	1047.04479219496	18.674	0.1064	18.674	18.612	18.718	0	75	49	1.27319752866042	0.0316694077427442	1.27319752866042	513.314029949845	0	12.7681298059515						381	13	4	NaN	NaN	NaN	0.00012612	1	33204	50.641	48.252	1	77975			11247	866	9470	9716	11247	11247		
LDYGQHVVAGTPGR	14	Unmodified	_LDYGQHVVAGTPGR_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.588035	1468.74228	-0.12262	-6.0158E-05	1.1107	0.00054491	0.98811	0.00048476	490.588204141935	5.6471	0.14194	5.6471	5.6115	5.7534	0	774	67	0.804600385996946	0.0449812275907344	0.804600385996946	487.939727849674	0	27.2782965692617						582	17	5	NaN	NaN	NaN	8.9619E-06	1	17545	138	121.35	1	232980			11248	1008	9471	9717	11248	11248		
LDYGQHVVAGTPGR	14	Unmodified	_LDYGQHVVAGTPGR_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.378414	1468.74228	2.4869	0.0018288	-0.55579	-0.00040872	1.9311	0.0014201	735.378057389508	5.6471	0.17741	5.6471	5.6026	5.78	8.8818E-16	450	43	1.02367897599655	0.0281911902363581	1.02367897599655	413.867432193477	0	11.3975335893181						512	21	5	NaN	NaN	NaN	0.00022486	1	17546	77.696	57.514	1	217080			11249	1008	9471	9717	11249	11249		
LDYHISVQNMMR	12	Unmodified	_LDYHISVQNMMR_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.911244	1505.7119	-1.8649	-0.00093788	-1.0701	-0.00053816	-2.935	-0.001476	502.910826973803	11.403	0.18624	11.403	11.35	11.536	0	786	34	0.796423123669906	0.0224921689856458	0.796423123669906	482.870199866922	0	13.6369698603086						268	22	4	NaN	NaN	NaN	0.0047281	1	18670	74.424	72.625	1	75396			11250	830	9472	9718	11250	11250		
LDYILGLK	8	Unmodified	_LDYILGLK_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.784036	933.553519	0.25441	0.00011901	-0.85306	-0.00039905	-0.59865	-0.00028004	467.783589991882	12.955	0.30149	12.955	12.893	13.194	0	711	61	0.847456455381371	0.0407671084543637	0.847456455381371	344.448498499423	0	16.5697826786268						1011	35	5	NaN	NaN	NaN	0.012201	1	2952	58.286	16.057	1	1458200			11251	1089	9473	9719	11251	11251		
LDYLGVSYGLTPR	13	Unmodified	_LDYLGVSYGLTPR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.387916	1452.76128	1.4213	0.0010338	1.1255	0.00081866	2.5467	0.0018525	727.388804072699	13.983	0.15075	13.983	13.921	14.072	0	375	61	1.07392668217569	0.0401455127608981	1.07392668217569	434.226851118929	0	16.2322622969039						637	18	4	NaN	NaN	NaN	9.2133E-05	1	17055	90.689	55.736	1	172850			11252	2841	9474	9720	11252	11252		
LDYLGVSYGLTPR	13	Unmodified	_LDYLGVSYGLTPR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.387916	1452.76128	1.8155	0.0013206	1.2858	0.00093528	3.1013	0.0022559	727.388549569534	13.992	0.13301	13.992	13.939	14.072	0	333	31	1.10198982404297	0.0200257779077562	1.10198982404297	445.573779361871	0	8.09713606454545						319	16	4	NaN	NaN	NaN	0.00013044	1	17056	94.791	59.839	1	88630			11253	2841	9474	9720	11253	11253		
LDYLSSLK	8	Unmodified	_LDYLSSLK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.7633	937.512048	-0.14431	-6.779E-05	-0.07798	-3.6632E-05	-0.22229	-0.00010442	469.763121356522	10.33	0.15073	10.33	10.285	10.436	0	702	40	0.853568545818287	0.0264820512722772	0.853568545818287	346.911503843844	0	10.7629648219151						286	18	3	NaN	NaN	NaN	0.058657	1	3033	37.722	14.413	1	97528			11254	576	9475	9721	11254	11254		
LDYNNIPTVVFSHPPIGTVGLTEDEAIHK	29	Unmodified	_LDYNNIPTVVFSHPPIGTVGLTEDEAIHK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	794.912021	3175.61898	1.1863	0.00094304	2.8303	0.0022498	4.0166	0.0031929	795.415442902736	16.271	0.30149	16.271	16.12	16.422	0	372	40	1.07593298845566	0.0260819868444595	1.07593298845566	865.606132282016	0	20.9833958033655						1138	35	7	NaN	NaN	NaN	2.3053E-10	1	38434	108.6	106.87	1	390140			11255	475	9476	9722	11255	11255		
LDYQHEIENLQNQQDSER	18	Unmodified	_LDYQHEIENLQNQQDSER_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	753.680599	2258.01997	0.33507	0.00025254	1.4571	0.0010982	1.7922	0.0013507	754.016329213723	9.9839	0.088646	9.9839	9.9396	10.028	0	627	31	0.90440375274676	0.0203016545312636	0.90440375274676	546.673248661647	0	12.2714787528308						239	11	4	NaN	NaN	NaN	3.5786E-05	1	35256	66.485	65.215	1	63895			11256	914	9477	9723	11256	11256		
LDYSDFQIVK	10	Unmodified	_LDYSDFQIVK_			0	0	0	P07311	P07311	P07311	ACYP1	Acylphosphatase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.316428	1226.6183	0.69384	0.00042624	-6.0171	-0.0036964	-5.3233	-0.0032702	614.312602148237	13.318	0.16852	13.318	13.238	13.407	0	576	43	0.938871150116794	0.0283515051757137	0.938871150116794	380.278573167934	0	11.4834393772164						344	20	3	NaN	NaN	NaN	0.0092623	1	10194	46.447	34.38	1	94271			11257	556	9478	9724	11257	11257		
LEAAIAEAEER	11	Unmodified	_LEAAIAEAEER_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.306592	1200.59863	1.4894	0.00089556	-0.99133	-0.00059609	0.49802	0.00029946	601.307601340186	6.5249	0.3192	6.5249	6.4363	6.7555	0	588	64	0.93076847747433	0.0425361068960246	0.93076847747433	377.087565291941	0	17.2328966596982						1588	37	7	NaN	NaN	NaN	2.2414E-11	1	9477	183.27	129.39	1	929260		+	11258	39	9479	9725	11258	11258		
LEAAIAEAEERGELALK	17	Unmodified	_LEAAIAEAEERGELALK_			0	0	1	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.988723	1811.96289	0.65597	0.00059496	1.115	0.0010113	1.7709	0.0016062	907.491237417125	11.908	0.22169	11.908	11.864	12.086	0	138	43	1.23157729878518	0.0277905846574242	1.23157729878518	497.038280164672	0	11.2156861096107						636	26	5	NaN	NaN	NaN	4.9951E-06	1	27534	120.21	106.43	1	236750		+	11259	39	9480	9726	11259	11259		
LEAALGEAK	9	Unmodified	_LEAALGEAK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.2531	900.491647	0.10012	4.5178E-05	2.1566	0.00097319	2.2568	0.0010184	451.254226796044	4.6007	0.18618	4.6007	4.5386	4.7248	0	765	43	0.810730346695089	0.0285925652531284	0.810730346695089	329.69658989867	0	11.6276284696138						439	22	3	NaN	NaN	NaN	0.019291	1	2335	60.892	36.041	1	215230			11260	493	9481	9727	11260	11260		
LEADLEK	7	Unmodified	_LEADLEK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	409.218726	816.422899	-0.94658	-0.00038736	1.3576	0.00055555	0.411	0.00016819	409.220042516602	4.042	0.21282	4.042	4.0066	4.2194	0	801	34	0.78619514174348	0.0225078287031693	0.78619514174348	320.212916443777	0	9.16731367211935						287	25	3	NaN	NaN	NaN	0.050934	1	1169	34.931	5.8298	1	51803			11261	1101	9482	9728	11261	11261		
LEAEGVPEVSEK	12	Unmodified	_LEAEGVPEVSEK_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.827357	1285.64016	1.8854	0.0012139	0.8395	0.00054049	2.7249	0.0017544	643.828078410728	6.7289	0.27488	6.7289	6.6313	6.9062	0	558	67	0.951016745717027	0.0444784249305462	0.951016745717027	385.001124586408	0	18.0062482550519						1075	32	4	NaN	NaN	NaN	0.00050401	1	11927	79.311	49.556	1	384060			11262	377	9483	9729	11262	11262		
LEAELGNMQGLVEDFK	16	Unmodified	_LEAELGNMQGLVEDFK_			0	0	0	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.29771	1791.8713	-1.6825	-0.0010067	-0.1088	-6.5095E-05	-1.7913	-0.0010717	598.631819730489	16.821	0.10639	16.821	16.785	16.892	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	524.160920000366	0	11.0903019782243						231	13	4	NaN	NaN	NaN	7.8402E-05	1	27015	119.43	114.9	1	60556		+	11263	28	9484	9730	11263	11263		
LEAELGNMQGLVEDFK	16	Unmodified	_LEAELGNMQGLVEDFK_			0	0	0	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.942927	1791.8713	1.407	0.001262	1.5643	0.0014031	2.9713	0.0026651	896.944663521559	16.821	0.54981	16.821	16.741	17.291	0	306	109	1.12000185836644	0.0719342939883401	1.12000185836644	452.047309358748	0	29.0336161544217						2299	63	6	NaN	NaN	NaN	6.1772E-44	1	27019	248.76	207.89	1	2408300		+	11264	28	9484	9730	11264	11264		
LEAELGNMQGLVEDFK	16	Oxidation (M)	_LEAELGNM(Oxidation (M))QGLVEDFK_	LEAELGNM(1)QGLVEDFK	LEAELGNM(180)QGLVEDFK	0	1	0	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.940384	1807.86622	2.9499	0.0026694	-2.1307	-0.0019282	0.81911	0.00074125	904.939117594997	12.857	0.25726	12.857	12.733	12.99	0	300	67	1.12400150285141	0.0439719025155401	1.12400150285141	453.630806600531	0	17.7464260993264						1089	30	6	NaN	NaN	NaN	7.6734E-24	1	27421	183.7	157.24	1	435990		+	11265	28	9484	9731	11265	11265	8	
LEAGLNR	7	Unmodified	_LEAGLNR_			0	0	0	P63218	P63218	P63218	GNG5	Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	386.719227	771.423902	-0.97367	-0.00037654	4.1518	0.0016056	3.1781	0.001229	386.721125581027	3.439	0.20405	3.439	3.4035	3.6076	0	837	25	0.761618911097395	0.0163978531356664	0.761618911097395	310.501641421278	0	6.68518105343946						154	24	2	NaN	NaN	NaN	0.01214	1	773	64.547	46.853	1	53804			11266	1432	9485	9732	11266	11266		
LEAHSDWVR	9	Unmodified	_LEAHSDWVR_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	371.520962	1111.54106	-0.21229	-7.8871E-05	-0.31018	-0.00011524	-0.52247	-0.00019411	371.520860328171	4.6982	0.11528	4.6982	4.6627	4.778	0	876	37	0.734948245421186	0.0246413987527491	0.734948245421186	447.032096972723	0	14.9881249807865						290	14	4	NaN	NaN	NaN	0.0030662	1	7025	87.251	63.676	1	126930			11267	1275	9486	9733	11267	11267		
LEALDANSR	9	Unmodified	_LEALDANSR_			0	0	0	P09496	P09496	P09496	CLTA	Clathrin light chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.756538	987.498523	1.4689	0.00072674	1.269	0.00062786	2.7379	0.0013546	494.757279893773	4.4765	0.26599	4.4765	4.3524	4.6184	0	702	40	0.853568545818287	0.0264673426716941	0.853568545818287	346.657706837397	0	10.7491171758833						773	31	4	NaN	NaN	NaN	0.011712	1	4006	48.157	5.3227	1	351560			11268	603	9487	9734	11268	11268		
LEALITQTR	9	Unmodified	_LEALITQTR_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.806031	1043.59751	1.0869	0.00056826	-0.48423	-0.00025316	0.60271	0.0003151	522.805971373571	7.3231	0.17735	7.3231	7.2166	7.394	0	648	37	0.890187667287968	0.0243890366748388	0.890187667287968	361.262646552851	0	9.89774208271137						274	21	3	NaN	NaN	NaN	0.010077	1	5326	49.96	28.686	1	96342			11269	3212	9488	9735	11269	11269		
LEAPDADELPK	11	Unmodified	_LEAPDADELPK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.303518	1196.59248	1.0878	0.00065193	-5.6199	-0.003368	-4.5321	-0.0027161	599.300637610587	8.2721	0.275	8.2721	8.1302	8.4051	0	585	49	0.932794566565362	0.0324017225316988	0.932794566565362	377.922802358443	0	13.1275955278223						398	32	2	NaN	NaN	NaN	0.0067598	1	9346	33.723	27.46	1	91255			11270	2674	9489	9736	11270	11270		
LEAPLEELR	9	Unmodified	_LEAPLEELR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.298039	1068.58152	0.94089	0.00050366	-0.37369	-0.00020004	0.5672	0.00030362	535.297792832167	10.826	0.2483	10.826	10.676	10.924	0	630	58	0.902373728295776	0.0385865321490887	0.902373728295776	366.096574845189	0	15.6547080350114						528	29	3	NaN	NaN	NaN	0.00036794	1	5931	102.46	76.241	1	136310			11271	1881	9490	9737	11271	11271		
LEAQHQALVTLWHQLHVDMK	20	Unmodified	_LEAQHQALVTLWHQLHVDMK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	600.067856	2396.24232	-0.36681	-0.00022011	-1.8842	-0.0011306	-2.251	-0.0013507	600.31748538917	14.489	0.15074	14.489	14.435	14.586	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	690.964888147283	0	18.0480502075656						360	18	5	NaN	NaN	NaN	6.7166E-05	1	36325	65.421	55.908	1	112990			11272	1816	9491	9738	11272	11272		
LEAQLTENNIVK	12	Unmodified	_LEAQLTENNIVK_			0	0	0	O15212	O15212	O15212	PFDN6	Prefoldin subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.377549	1370.74054	1.7592	0.0012074	0.52644	0.00036134	2.2856	0.0015688	686.378046861362	8.5205	0.23065	8.5205	8.4672	8.6979	0	465	37	1.01360860968299	0.0241772305983219	1.01360860968299	410.069353202785	0	9.78123234054732						524	27	5	NaN	NaN	NaN	5.6941E-05	1	14521	94.791	76.284	1	260810			11273	154	9492	9739	11273	11273		
LEATLQEEAAIQQEHR	16	Unmodified	_LEATLQEEAAIQQEHR_			0	0	0	O95202	O95202	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.471229	1864.9279	1.5074	0.0014071	-0.28436	-0.00026544	1.223	0.0011417	933.972496388711	7.4205	0.070934	7.4205	7.4028	7.4738	0	132	19	1.23554629282893	0.0119069825789133	1.23554629282893	498.53250439355	0	4.80436700695753						85	9	3	NaN	NaN	NaN	1.1482E-08	1	28811	117.77	106.8	1	14103			11274	411	9493	9740	11274	11274		
LEAVSHTSDMHR	12	Unmodified	_LEAVSHTSDMHR_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.8277	1381.64085	2.0723	0.0014336	-1.5533	-0.0010746	0.51893	0.00035901	691.826636739466	2.6055	0.079814	2.6055	2.5878	2.6676	0	501	28	0.98941132619024	0.0181617640607624	0.98941132619024	400.248483768081	0	7.34701365898462						112	10	3	NaN	NaN	NaN	0.00026478	1	14870	101.48	85.602	1	19597			11275	1516	9494	9741	11275	11275		
LEAVSHTSDMHR	12	Unmodified	_LEAVSHTSDMHR_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.554226	1381.64085	-0.11705	-5.4023E-05	1.3213	0.00060986	1.2043	0.00055584	461.555015882506	2.6055	0.29261	2.6055	2.5878	2.8804	0	828	31	0.767766820543916	0.0204916061947072	0.767766820543916	465.875926744485	0	12.4341737243596						526	34	4	NaN	NaN	NaN	1.9906E-07	1	14871	140.05	117	1	173260			11276	1516	9494	9741	11276	11276		
LEAVSHTSDMHR	12	Unmodified	_LEAVSHTSDMHR_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	346.417488	1381.64085	-1.0466	-0.00036255	3.0029	0.0010403	1.9564	0.00067772	346.418695035378	2.6055	0.044327	2.6055	2.5878	2.6321	0	882	19	0.730840773481911	0.0123241351954552	0.730840773481911	591.288316289266	0	9.9708683667501						61	6	3	NaN	NaN	NaN	0.072147	1	14872	8.4737	4.5808	1	10855			11277	1516	9494	9741	11277	11277		
LEAYQHLFYLLQTNPTYLAK	20	Unmodified	_LEAYQHLFYLLQTNPTYLAK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.430004	2425.26818	0.78234	0.00063325	-0.88095	-0.00071307	-0.098611	-7.9818E-05	809.763659523232	18.24	0.13302	18.24	18.195	18.328	0	528	64	0.971237000454584	0.0424537385522985	0.971237000454584	586.82361628685	0	25.6506458984736						700	16	5	NaN	NaN	NaN	2.9708E-11	1	36468	135.89	133.92	1	270910			11278	1095	9495	9742	11278	11278		
LECSEELGDLVK	12	Unmodified	_LECSEELGDLVK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.339775	1390.665	2.0252	0.0014102	-0.021824	-1.5197E-05	2.0034	0.001395	696.340349001945	10.773	0.27489	10.773	10.702	10.977	0	480	49	1.00353128488872	0.0322630489708209	1.00353128488872	405.934350974432	0	13.0505944773598						961	32	5	NaN	NaN	NaN	1.0776E-16	1	15162	167.76	112.52	1	843840			11279	1503	9496	9743	11279	11279		
LECVEPNCR	9	Unmodified	_LECVEPNCR_			0	0	0	Q969Q0;P83881	Q969Q0	Q969Q0	RPL36AL;RPL36A	60S ribosomal protein L36a-like;60S ribosomal protein L36a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.76044	1175.50633	2.6296	0.0015482	-0.18908	-0.00011133	2.4405	0.0014369	588.760506607743	3.8558	0.3281	3.8558	3.7849	4.113	0	663	70	0.880024865079826	0.046729464203025	0.880024865079826	356.615973473997	0	18.9363664913814						964	38	5	NaN	NaN	NaN	6.3045E-06	1	8740	137.88	132.57	1	341090			11280	2461	9497	9744	11280	11280		
LECWIDPLSMGPQK	14	Unmodified	_LECWIDPLSMGPQK_			0	0	0	Q8N122	Q8N122	Q8N122	RPTOR	Regulatory-associated protein of mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.404926	1672.7953	1.2984	0.0010873	3.178	0.0026613	4.4765	0.0037486	837.408722087336	15.73	0.079783	15.73	15.695	15.775	0	372	25	1.07593298845566	0.0160449211219345	1.07593298845566	434.497836752805	0	6.47947743321487						104	10	2	NaN	NaN	NaN	0.00018109	1	23687	34.193	32.209	1	21780			11281	2236	9498	9745	11281	11281		
LEDAADVYR	9	Unmodified	_LEDAADVYR_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.256371	1050.49819	1.2	0.00063151	1.5481	0.00081471	2.7481	0.0014462	526.256592339372	5.6203	0.21286	5.6203	5.576	5.7889	0	672	67	0.873923798053065	0.044762926451146	0.873923798053065	354.631974006218	0	18.1644726977685						417	25	3	NaN	NaN	NaN	0.0022344	1	5477	72.038	45.582	1	172340			11282	2785	9499	9746	11282	11282		
LEDFFAR	7	Unmodified	_LEDFFAR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	449.226885	896.439217	-0.89131	-0.0004004	-2.92	-0.0013117	-3.8113	-0.0017121	449.225546927644	10.312	0.19505	10.312	10.241	10.436	0	762	52	0.812773098473386	0.0347364557222563	0.812773098473386	330.549773214308	0	14.1271008880921						550	23	3	NaN	NaN	NaN	0.0086281	1	2269	80.294	40.532	1	248010			11283	653	9500	9747	11283	11283		
LEDGTEFDSSLPQNQPFVFSLGTGQVIK	28	Unmodified	_LEDGTEFDSSLPQNQPFVFSLGTGQVIK_			0	0	0	P26885	P26885	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1018.50826	3052.50295	1.4719	0.0014991	-0.0057816	-5.8886E-06	1.4661	0.0014933	1018.84307616508	18.639	0.05319	18.639	18.612	18.665	0	342	73	1.09598084995137	0.0481016363895093	1.09598084995137	661.418531941086	0	29.0290781322731						401	7	5	NaN	NaN	NaN	4.998E-05	1	38293	75.312	72.238	1	80761			11284	860	9501	9748	11284	11284		
LEDILESINSIK	12	Unmodified	_LEDILESINSIK_			0	0	0	Q9Y3A6	Q9Y3A6	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.379757	1372.74496	0.88147	0.0006059	-0.32627	-0.00022427	0.5552	0.00038163	687.379365205942	15.748	0.2128	15.748	15.65	15.863	0	489	58	0.997481546940468	0.0383097280775055	0.997481546940468	403.53904745323	0	15.4985034299702						540	25	3	NaN	NaN	NaN	2.9479E-05	1	14590	99.174	48.34	1	216370			11285	3377	9502	9749	11285	11285		
LEDLEVIQHR	10	Unmodified	_LEDLEVIQHR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.894577	1250.6619	-1.0756	-0.00044948	-1.0577	-0.00044203	-2.1333	-0.00089151	417.894236981574	7.3319	0.23947	7.3319	7.2875	7.527	8.8818E-16	828	64	0.767766820543916	0.0429874603152014	0.767766820543916	466.358277100467	0	26.1115190095341						450	28	4	NaN	NaN	NaN	0.0013899	1	10940	56.014	48.864	1	167280			11286	1511	9503	9750	11286	11286		
LEDLEVIQHR	10	Unmodified	_LEDLEVIQHR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.338227	1250.6619	1.8968	0.0011881	-1.6282	-0.0010198	0.26862	0.00016825	626.338052761367	7.3408	0.23942	7.3408	7.2698	7.5092	0	537	37	0.965173861991602	0.0242542357032265	0.965173861991602	390.848510672953	0	9.82178680487237						349	28	4	NaN	NaN	NaN	0.0067053	1	10942	37.591	33.389	1	120660			11287	1511	9503	9750	11287	11287		
LEDLIVK	7	Unmodified	_LEDLIVK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.255111	828.49567	-1.1752	-0.00048801	-0.26105	-0.0001084	-1.4363	-0.00059641	415.254962133861	7.935	0.12411	7.935	7.8818	8.0059	0	762	43	0.812773098473386	0.0286005208514435	0.812773098473386	330.958340450918	0	11.6460312660503						269	15	3	NaN	NaN	NaN	0.0092387	1	1295	56.091	26.781	1	111080			11288	832	9504	9751	11288	11288		
LEDLLQDAQDEK	12	Unmodified	_LEDLLQDAQDEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.846278	1415.678	1.9196	0.0013607	-0.02786	-1.9748E-05	1.8917	0.0013409	708.846201340994	10.046	0.24827	10.046	9.9662	10.214	0	492	55	0.995464410099171	0.0363059678066375	0.995464410099171	402.601202390598	0	14.6834242837978						710	29	4	NaN	NaN	NaN	1.0305E-05	1	15957	125.17	107.7	1	322870			11289	1816	9505	9752	11289	11289		
LEDLPVIIK	9	Unmodified	_LEDLPVIIK_			0	0	0	Q9BXW9	Q9BXW9	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.323525	1038.6325	0.76353	0.00039728	-3.0591	-0.0015917	-2.2956	-0.0011944	520.322211744033	12.857	0.10644	12.857	12.804	12.91	0	690	40	0.86171403876517	0.0264636674362559	0.86171403876517	349.729043152822	0	10.7403531501689						261	13	3	NaN	NaN	NaN	0.0069061	1	5205	58.426	49.033	1	64908			11290	2791	9506	9753	11290	11290		
LEDLSESIVNDFAYMK	16	Unmodified	_LEDLSESIVNDFAYMK_			0	0	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.448042	1872.88153	0.57912	0.0005429	2.0403	0.0019127	2.6194	0.0024556	937.951588028306	18.213	0.062046	18.213	18.178	18.24	0	213	34	1.18187287897418	0.0219090010853469	1.18187287897418	476.860773311644	0	8.83981973519207						184	8	3	NaN	NaN	NaN	1.7927E-06	1	29000	106.11	82.308	1	40349			11291	1146	9507	9754	11291	11291		
LEDNDSAASDPDAETTAR	18	Unmodified	_LEDNDSAASDPDAETTAR_			0	0	0	Q9BYV8	Q9BYV8	Q9BYV8	CEP41	Centrosomal protein of 41 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.403406	1876.79226	2.9647	0.0027851	-1.5225	-0.0014303	1.4422	0.0013548	939.903297486109	4.0953	0.026627	4.0953	4.0864	4.113	0	366	16	1.07994477139643	0.0100273841613836	1.07994477139643	435.728267606879	0	4.04577608502956						34	4	2	NaN	NaN	NaN	0.0024057	1	29069	48.363	39.989	1	5652.3			11292	2805	9508	9755	11292	11292		
LEDPDPGVQSAAVNVICELAR	21	Unmodified	_LEDPDPGVQSAAVNVICELAR_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.06262	2252.1107	0.32891	0.00037071	-0.044077	-4.9678E-05	0.28484	0.00032103	1127.56394679744	18.497	0.062122	18.497	18.47	18.532	0	63	40	1.28111162701928	0.0257190637601958	1.28111162701928	516.261023623352	0	10.3642414161565						255	8	4	NaN	NaN	NaN	0.0010496	1	35210	47.491	38.359	1	48290			11293	108	9509	9756	11293	11293		
LEDRDNWISVDSVTSEIK	18	Unmodified	_LEDRDNWISVDSVTSEIK_			0	0	1	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.683169	2105.02768	0.96908	0.00068096	-0.6818	-0.00047909	0.28728	0.00020187	703.017117906042	13.584	0.11529	13.584	13.549	13.664	0	600	28	0.922661313351899	0.0182449125514795	0.922661313351899	557.956784398335	0	11.0331630811205						206	14	3	NaN	NaN	NaN	0.041117	1	33390	69.201	48.234	1	69186			11294	1722	9510	9757	11294	11294		
LEDTENWLYEDGEDQPK	17	Unmodified	_LEDTENWLYEDGEDQPK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.95273	2079.89091	1.8851	0.0019623	-0.040461	-4.2118E-05	1.8447	0.0019202	1041.45402510818	11.58	0.19513	11.58	11.509	11.704	0	177	109	1.2057522832638	0.0716678262011892	1.2057522832638	486.139424198384	0	28.8952849159758						2308	23	6	NaN	NaN	NaN	2.6421E-34	1	33017	199.3	197.93	1	1017900			11295	955	9511	9758	11295	11295		
LEDVALQILLACPVSK	16	Unmodified	_LEDVALQILLACPVSK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.997505	1767.98046	1.7959	0.0015894	1.1108	0.00098303	2.9067	0.0025724	885.50079242763	18.541	0.19515	18.541	18.479	18.674	0	267	46	1.14597988355104	0.0299540369023827	1.14597988355104	462.580373976252	0	12.0910932131433						493	23	5	NaN	NaN	NaN	0.0018367	1	26365	59.77	44.796	1	153120			11296	1055	9512	9759	11296	11296		
LEEDDGDVAMSDAQDGPR	18	Unmodified	_LEEDDGDVAMSDAQDGPR_			0	0	0	Q9UBU9	Q9UBU9	Q9UBU9	NXF1	Nuclear RNA export factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.399809	1918.78506	2.5851	0.0024828	-1.0045	-0.00096468	1.5807	0.0015181	960.398497122669	6.9328	0.097529	6.9328	6.8796	6.9771	0	288	37	1.13199748998575	0.0239813645434503	1.13199748998575	456.65676613628	0	9.67427267006138						260	12	4	NaN	NaN	NaN	0.069511	1	30025	24.164	23.955	1	55017			11297	3191	9513	9760	11297	11297		
LEEDQEDMNELMK	13	Unmodified	_LEEDQEDMNELMK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.347471	1622.68039	1.7906	0.0014546	2.3723	0.0019271	4.1629	0.0033817	812.34900925313	9.5317	0.088675	9.5317	9.4962	9.5849	0	399	28	1.0578662689527	0.0180766890154731	1.0578662689527	427.31026946824	0	7.30182545846998						207	11	4	NaN	NaN	NaN	0.00014271	1	22254	71.896	63.895	1	51963			11298	2418	9514	9761	11298	11298		
LEEELSVLK	9	Unmodified	_LEEELSVLK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.300247	1058.58594	0.4561	0.00024187	-1.9545	-0.0010365	-1.4984	-0.00079463	530.299494331588	9.913	0.088687	9.913	9.8598	9.9484	0	642	28	0.894250814548268	0.0182803602689122	0.894250814548268	362.844674591398	0	7.41730537482107						160	11	3	NaN	NaN	NaN	0.010654	1	5691	62.969	45.573	1	43883			11299	1668	9515	9762	11299	11299		
LEEEQIILEDQNCK	14	Unmodified	_LEEEQIILEDQNCK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.922191	1759.82983	2.5421	0.0022394	-0.32407	-0.00028548	2.218	0.0019539	880.92252541063	9.5406	0.133	9.5406	9.4962	9.6292	0	330	40	1.10399226369747	0.0260281358155467	1.10399226369747	445.647930898345	0	10.5067628214088						264	16	3	NaN	NaN	NaN	2.4155E-11	1	26138	141.44	104.49	1	62040			11300	972	9516	9763	11300	11300		
LEEETEEDEEEK	12	Unmodified	_LEEETEEDEEEK_			0	0	0	Q8N954	Q8N954	Q8N954	GPATCH11	G patch domain-containing protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.809755	1507.60496	2.0553	0.0015514	-0.31361	-0.00023671	1.7417	0.0013146	754.808385265345	2.9513	0.062061	2.9513	2.9336	2.9956	0	483	22	1.00151498427745	0.0141160558867166	1.00151498427745	404.809233195001	0	5.70566576531269						81	8	3	NaN	NaN	NaN	0.0058009	1	18713	54.584	50.056	1	11206			11301	2276	9517	9764	11301	11301		
LEEEVDDVFLIR	12	Unmodified	_LEEEVDDVFLIR_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.882664	1475.75077	1.4436	0.0010667	0.81498	0.00060217	2.2586	0.0016688	739.384368787664	15.446	0.23953	15.446	15.278	15.517	0	369	91	1.07793901817685	0.0602598446400684	1.07793901817685	435.78512863102	0	24.3616231576554						699	28	3	NaN	NaN	NaN	0.00032874	1	17770	60.547	37.65	1	174280			11302	1600	9518	9765	11302	11302		
LEEGGPVYSPPAEVVVK	17	Unmodified	_LEEGGPVYSPPAEVVVK_			0	0	0	O95202	O95202	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.469635	1768.92472	2.4947	0.002209	-0.83987	-0.00074368	1.6549	0.0014653	885.970050480631	10.871	0.1153	10.871	10.809	10.924	0	255	34	1.15396378101328	0.0219542113279454	1.15396378101328	465.801185440936	0	8.86188789478143						175	14	3	NaN	NaN	NaN	0.068205	1	26386	36.46	33.745	1	25681			11303	411	9519	9766	11303	11303		
LEELALAK	8	Unmodified	_LEELALAK_			0	0	0		REV__P35579	REV__P35579			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.765843	885.517133	-1.094	-0.0004855	-0.7475	-0.00033171	-1.8415	-0.00081721	443.765602912258	7.4117	0.14185	7.4117	7.3585	7.5003	0	759	31	0.814815566123307	0.0204232585244036	0.814815566123307	331.442068563892	0	8.30755735846992						226	17	3	NaN	NaN	NaN	0.0094452	1	2084	53.679	0	1	56577	+		11304	3491	9520	9767	11304	11304		
LEELDADK	8	Unmodified	_LEELDADK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.732197	931.449842	0.16526	7.7133E-05	8.0107	0.0037388	8.176	0.003816	466.736014380881	4.1573	0.1951	4.1573	4.0509	4.246	0	756	34	0.816857749704129	0.0224577750816375	0.816857749704129	332.022494276962	0	9.12825580857509						238	23	3	NaN	NaN	NaN	0.003162	1	2896	79.809	39.606	1	137810			11305	3202	9521	9768	11305	11305		
LEELHVIDVK	10	Unmodified	_LEELHVIDVK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.895806	1193.66559	-2.5174	-0.0010042	0.64442	0.00025706	-1.873	-0.00074712	398.896219489727	9.0794	0.15076	9.0794	9.0351	9.1858	0	783	34	0.798467866007927	0.0224859096742921	0.798467866007927	485.259128992822	0	13.6655379730084						205	18	3	NaN	NaN	NaN	0.05135	1	9271	32.14	24.99	1	51361			11306	1884	9522	9769	11306	11306		
LEELHVIDVK	10	Unmodified	_LEELHVIDVK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.840071	1193.66559	1.154	0.00068991	-0.30201	-0.00018055	0.85199	0.00050935	597.840172254461	9.0617	0.15075	9.0617	9.0085	9.1592	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.871183469604	0	8.18908777727069						314	18	4	NaN	NaN	NaN	3.2493E-07	1	9272	135.63	100.85	1	118960			11307	1884	9522	9769	11307	11307		
LEELIDSLGSNPFLTR	16	Unmodified	_LEELIDSLGSNPFLTR_			0	0	0	Q7Z4H7	Q7Z4H7	Q7Z4H7	HAUS6	HAUS augmin-like complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.477991	1802.94143	0.96835	0.00087391	-0.062878	-5.6746E-05	0.90547	0.00081716	902.979736426083	18.053	0.04436	18.053	18.027	18.071	0	330	22	1.10399226369747	0.0140151480609543	1.10399226369747	445.564623785213	0	5.65642928706649						69	6	2	NaN	NaN	NaN	0.0041597	1	27298	47.57	43.324	1	17058			11308	2138	9523	9770	11308	11308		
LEELILEDTSLSPEER	16	Unmodified	_LEELILEDTSLSPEER_			0	0	0	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.975478	1871.9364	1.8042	0.0016905	-0.60701	-0.00056876	1.1972	0.0011217	937.476887432893	14.471	0.13302	14.471	14.382	14.515	0	261	34	1.14997238118939	0.0219542113279454	1.14997238118939	463.991326978702	0	8.85809417117343						236	16	3	NaN	NaN	NaN	0.0041953	1	28980	29.115	21.15	1	45482			11309	1785	9524	9771	11309	11309		
LEELQLFK	8	Unmodified	_LEELQLFK_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.292225	1018.5699	0.10308	5.26E-05	-3.4604	-0.0017658	-3.3573	-0.0017132	510.290949148634	12.955	0.12413	12.955	12.91	13.034	-1.7764E-15	684	31	0.86578508874114	0.0203524260142245	0.86578508874114	351.471814888168	0	8.26221680370782						181	15	3	NaN	NaN	NaN	0.060619	1	4715	42.835	10.707	1	47214			11310	2601	9525	9772	11310	11310		
LEELSLEGNPFLTVNDNLK	19	Unmodified	_LEELSLEGNPFLTVNDNLK_			0	0	0	Q9UFC0	Q9UFC0	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.05733	2144.10011	1.0596	0.001137	-1.8614	-0.0019974	-0.80188	-0.00086047	1073.55863667793	17.77	0.11526	17.77	17.708	17.823	0	126	31	1.23951419873743	0.019831374957614	1.23951419873743	499.652408676259	0	7.99409500514554						242	14	4	NaN	NaN	NaN	1.6457E-07	1	33941	74.733	69.117	1	40074			11311	3200	9526	9773	11311	11311		
LEELWLDGNSLCDTFR	16	Unmodified	_LEELWLDGNSLCDTFR_			0	0	0	Q9UBU9	Q9UBU9	Q9UBU9	NXF1	Nuclear RNA export factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.462015	1966.90948	0.81228	0.00079966	2.5058	0.0024669	3.3181	0.0032666	984.965856619494	17.353	0.15961	17.353	17.3	17.459	0	240	31	1.16393748060522	0.0199378074440928	1.16393748060522	469.459107567522	0	8.04165639952572						311	19	4	NaN	NaN	NaN	0.0011305	1	31041	82.437	75.23	1	72189			11312	3191	9527	9774	11312	11312		
LEELYTK	7	Unmodified	_LEELYTK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.242201	894.469849	0.67219	0.0003013	2.206	0.00098882	2.8782	0.0012901	448.242235431677	5.1504	0.1064	5.1504	5.0972	5.2036	0	747	49	0.822982596624503	0.0326545061088502	0.822982596624503	334.713002574143	0	13.2808249312906						308	13	3	NaN	NaN	NaN	0.02927	1	2247	46.835	19.131	1	115850			11313	3300	9528	9775	11313	11313		
LEEMFPDEVDTPR	13	Unmodified	_LEEMFPDEVDTPR_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.361238	1576.70792	1.5979	0.0012613	1.0307	0.00081363	2.6287	0.002075	789.361623335366	11.58	0.14194	11.58	11.527	11.669	0	396	46	1.05987478976334	0.0301195105360905	1.05987478976334	428.22723216787	0	12.1693569426262						543	17	5	NaN	NaN	NaN	0.0036811	1	20866	58.476	55.374	1	204140			11314	1923	9529	9776	11314	11314		
LEEMGFK	7	Unmodified	_LEEMGFK_			0	0	0	Q14141;Q9NVA2	Q14141	Q14141	SEPT6;SEPT11	Septin-6;Septin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.209847	852.40514	-1.5859	-0.00067753	-0.054109	-2.3116E-05	-1.64	-0.00070065	427.209784010293	6.5427	0.070944	6.5427	6.5161	6.587	-8.8818E-16	843	16	0.757518876820989	0.0102522288533897	0.757518876820989	308.318157972827	0	4.17276507809055						58	9	2	NaN	NaN	NaN	0.061438	1	1594	37.608	19.914	1	10609			11315	1725	9530	9777	11315	11315		
LEEMINELAVAMTAVK	16	Unmodified	_LEEMINELAVAMTAVK_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.459898	1760.90524	1.2932	0.0011399	-1.9698	-0.0017363	-0.6766	-0.00059639	882.460306053555	19.162	0.1064	19.162	19.109	19.215	0	291	55	1.12999890578964	0.035986907125598	1.12999890578964	456.143845695903	0	14.5267452268025						599	13	5	NaN	NaN	NaN	7.9188E-07	1	26171	116.36	92.429	1	162220			11316	1832	9531	9778	11316	11316		
LEEMINELAVAMTAVK	16	Unmodified	_LEEMINELAVAMTAVK_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.975691	1760.90524	-0.95373	-0.00056077	0.69819	0.00041052	-0.25554	-0.00015025	588.310624910392	19.153	0.062065	19.153	19.126	19.188	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	543.927118521722	0	9.83682555308587						138	8	4	NaN	NaN	NaN	0.0021438	1	26173	66.619	65.656	1	28596			11317	1832	9531	9778	11317	11317		
LEEMINELAVAMTAVK	16	Unmodified	_LEEMINELAVAMTAVK_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.459898	1760.90524	0.71319	0.00062864	0.63343	0.00055834	1.3466	0.001187	881.961963497079	19.153	0.053194	19.153	19.126	19.179	0	174	58	1.20774045859593	0.0377960922169496	1.20774045859593	487.525574890076	0	15.2570541588784						175	7	4	NaN	NaN	NaN	8.2444E-05	1	26174	106.97	94.389	1	33526			11318	1832	9531	9778	11318	11318		
LEENLPILQQPTEK	14	Unmodified	_LEENLPILQQPTEK_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.448702	1650.88285	1.9771	0.001634	-0.35663	-0.00029473	1.6205	0.0013393	826.448279374122	12.112	0.32812	12.112	11.935	12.263	0	372	58	1.07593298845566	0.0381303481236166	1.07593298845566	434.545227235553	0	15.3999932781413						1217	38	4	NaN	NaN	NaN	4.0584E-06	1	23087	137.58	114.62	1	589750			11319	272	9532	9779	11319	11319		
LEENLQETHSAVL	13	Unmodified	_LEENLQETHSAVL_			0	0	0	Q8IXU6	Q8IXU6	Q8IXU6	SLC35F2	Solute carrier family 35 member F2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.87537	1481.73619	1.2853	0.00095355	-3.546	-0.0026307	-2.2607	-0.0016772	741.872479943254	8.9553	0.23069	8.9553	8.8221	9.0528	0	456	40	1.01965166402748	0.0261757253352226	1.01965166402748	412.205484749939	0	10.5818270406863						311	27	4	NaN	NaN	NaN	0.0059081	1	17960	53.028	24.381	1	83943			11320	2215	9533	9780	11320	11320		
LEEPTPAPSTSYSPQADSLR	20	Unmodified	_LEEPTPAPSTSYSPQADSLR_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.51857	2145.02259	1.8924	0.0020316	-1.2488	-0.0013406	0.64365	0.00069097	1073.51732442323	9.106	0.062084	9.106	9.0706	9.1326	0	159	49	1.21767724410157	0.0317868179326015	1.21767724410157	490.848497033493	0	12.8133393994782						152	8	3	NaN	NaN	NaN	0.0011824	1	33956	51.577	49.188	1	24484			11321	1568	9534	9781	11321	11321		
LEEQLENLIEFIR	13	Unmodified	_LEEQLENLIEFIR_			0	0	0	Q15126	Q15126	Q15126	PMVK	Phosphomevalonate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.44342	1644.87229	0.77938	0.00064178	-0.59383	-0.00048898	0.18556	0.00015279	823.944650516703	19.534	0.053219	19.534	19.516	19.57	0	384	28	1.06790610341098	0.0180642284135071	1.06790610341098	431.316465600745	0	7.29595900635081						121	7	3	NaN	NaN	NaN	2.5627E-07	1	22893	105.94	65.41	1	22747			11322	1815	9535	9782	11322	11322		
LEESAVTVMFDK	12	Unmodified	_LEESAVTVMFDK_			0	0	0	Q9NZL9	Q9NZL9	Q9NZL9	MAT2B	Methionine adenosyltransferase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.83941	1367.66427	0.88176	0.00060386	7.4417	0.0050964	8.3235	0.0057002	685.346824495341	12.502	0.1862	12.502	12.449	12.635	0	489	37	0.997481546940468	0.024207319296828	0.997481546940468	403.553962223298	0	9.79362440037448						425	22	4	NaN	NaN	NaN	0.0052225	1	14425	60	47.404	1	112690			11323	3135	9536	9783	11323	11323		
LEESSTIGQDQTLMER	16	Unmodified	_LEESSTIGQDQTLMER_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.93583	1835.85711	2.555	0.0023479	-1.3244	-0.0012171	1.2306	0.0011308	918.934662296069	8.7245	0.097571	8.7245	8.6891	8.7866	0	303	49	1.12200181823275	0.0320059751751898	1.12200181823275	452.77119792916	0	12.9156508353853						539	12	5	NaN	NaN	NaN	2.0528E-24	1	28125	202.24	185.95	1	216820			11324	2621	9537	9784	11324	11324		
LEESSTIGQDQTLMER	16	Oxidation (M)	_LEESSTIGQDQTLM(Oxidation (M))ER_	LEESSTIGQDQTLM(1)ER	LEESSTIGQDQTLM(75)ER	0	1	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.933287	1851.85202	2.2303	0.0020673	-1.9349	-0.0017935	0.29536	0.00027377	926.93172676702	6.6668	0.053197	6.6668	6.6491	6.7023	0	300	31	1.12400150285141	0.0199982246978856	1.12400150285141	453.548772270792	0	8.06953570463378						129	7	4	NaN	NaN	NaN	1.1732E-05	1	28537	75.012	68.156	1	22650			11325	2621	9537	9785	11325	11325	609	
LEESYDMESVLR	12	Unmodified	_LEESYDMESVLR_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.842681	1469.67081	0.65774	0.000484	2.8279	0.0020809	3.4856	0.0025649	735.844230501628	11.908	0.21282	11.908	11.846	12.059	0	438	49	1.03173026378327	0.0321918235731047	1.03173026378327	417.120048136587	0	13.0148891331142						576	25	4	NaN	NaN	NaN	0.042184	1	17566	47.334	39.777	1	274750			11326	961	9538	9786	11326	11326		
LEESYTLNSDLAR	13	Unmodified	_LEESYTLNSDLAR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.872827	1509.7311	1.6671	0.0012601	-0.25741	-0.00019457	1.4097	0.0010655	755.87287003563	9.3544	0.27493	9.3544	9.3011	9.576	0	417	82	1.04580932352505	0.0542450724099659	1.04580932352505	422.707451174542	0	21.9254081804386						1480	32	7	NaN	NaN	NaN	9.2528E-17	1	18788	199.59	101.58	1	603900			11327	916	9539	9787	11327	11327		
LEEVKDKDGK	10	Unmodified	_LEEVKDKDGK_			0	0	2	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.81151	1159.60847	1.4826	0.00086112	-1.5072	-0.0008754	-0.024588	-1.4281E-05	580.810904770284	2.5168	0.14188	2.5168	2.499	2.6409	0	600	22	0.922661313351899	0.0141924536519389	0.922661313351899	373.953165503315	0	5.75217893348201						104	17	2	NaN	NaN	NaN	0.042445	1	8341	56.014	2.3351	1	18844			11328	785	9540	9788	11328	11328		
LEEVLTNK	8	Unmodified	_LEEVLTNK_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.266207	944.517862	1.1029	0.00052196	-0.54658	-0.00025868	0.55632	0.00026329	473.265981467739	5.0706	0.17733	5.0706	5.0085	5.1859	0	714	58	0.845418525735192	0.038736824845677	0.845418525735192	343.562316690484	0	15.741922941233						455	21	4	NaN	NaN	NaN	0.0005315	1	3153	113.14	39.499	1	356020			11329	1464	9541	9789	11329	11329		
LEEVMQELR	9	Unmodified	_LEEVMQELR_			0	0	0	Q9BR76	Q9BR76	Q9BR76	CORO1B	Coronin-1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.794806	1145.57506	0.65618	0.00037651	-0.50561	-0.00029012	0.15056	8.6393E-05	573.795139261739	9.2479	0.22171	9.2479	9.1858	9.4076	0	588	34	0.93076847747433	0.0222869832094168	0.93076847747433	377.293292284488	0	9.03417925474582						385	26	4	NaN	NaN	NaN	3.7113E-05	1	7941	115.86	50.548	1	91478			11330	2702	9542	9790	11330	11330		
LEFHQSVFDELR	12	Unmodified	_LEFHQSVFDELR_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.256174	1518.74669	-2.3814	-0.001208	0.87286	0.00044276	-1.5085	-0.00076521	507.256801298599	12.369	0.10639	12.369	12.325	12.431	0	789	31	0.794378096728713	0.0204516951022167	0.794378096728713	481.592691716107	0	12.3988651436813						204	13	3	NaN	NaN	NaN	0.00017144	1	19093	71.066	68.587	1	53924			11331	2394	9543	9791	11331	11331		
LEFIQPNVISGIPIYR	16	Unmodified	_LEFIQPNVISGIPIYR_			0	0	0	P12694	P12694	P12694	BCKDHA	2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.024911	1858.03527	0.88424	0.00082237	0.71171	0.00066191	1.596	0.0014843	930.527061961927	18.133	0.070919	18.133	18.089	18.16	0	261	43	1.14997238118939	0.0279436470616286	1.14997238118939	464.016858697253	0	11.2753345577491						215	9	4	NaN	NaN	NaN	0.00011346	1	28662	69.327	56.152	1	60323			11332	670	9544	9792	11332	11332		
LEFPQVLYLDR	11	Unmodified	_LEFPQVLYLDR_			0	0	0	Q9UHP3	Q9UHP3	Q9UHP3	USP25	Ubiquitin carboxyl-terminal hydrolase 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.879727	1391.7449	-0.32797	-0.00022856	-0.28215	-0.00019662	-0.61012	-0.00042518	696.880279278166	17.016	0.12412	17.016	16.936	17.06	0	450	25	1.02367897599655	0.0161092490285764	1.02367897599655	414.081049291741	0	6.51623692335886						154	15	3	NaN	NaN	NaN	0.010883	1	15205	34.953	28.689	1	26961			11333	3219	9545	9793	11333	11333		
LEGALGADTTEDGDEK	16	Unmodified	_LEGALGADTTEDGDEK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.865396	1619.71624	3.123	0.0025324	0.0044335	3.595E-06	3.1275	0.002536	810.86651238192	5.5494	0.31038	5.5494	5.5051	5.8155	0	420	52	1.04379886199097	0.0341872929561484	1.04379886199097	421.634476935008	0	13.8096925646143						650	36	4	NaN	NaN	NaN	0.00013537	1	22171	92.747	82.497	1	152400			11334	3136	9546	9794	11334	11334		
LEGDLSLADK	10	Unmodified	_LEGDLSLADK_			0	0	0	Q8IVF2	Q8IVF2	Q8IVF2	AHNAK2	Protein AHNAK2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.779679	1059.5448	-0.10476	-5.5607E-05	-0.026984	-1.4322E-05	-0.13175	-6.9929E-05	530.779874795273	7.5536	0.16848	7.5536	7.5003	7.6688	0	696	58	0.857641857947968	0.0386723063597282	0.857641857947968	347.986438989889	0	15.6912096266462						459	20	3	NaN	NaN	NaN	0.00057327	1	5715	74.424	25.099	1	142500			11335	2197	9547	9795	11335	11335		
LEGDLTGPSVGVEVPDVELECPDAK	25	Unmodified	_LEGDLTGPSVGVEVPDVELECPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1313.13364	2624.25273	0.43636	0.000573	-0.32462	-0.00042626	0.11175	0.00014674	1313.63617942771	15.34	0.026579	15.34	15.331	15.358	-1.7764E-15	60	16	1.28308947459206	0.00989059189774588	1.28308947459206	516.608180289338	0	3.98223255934931						33	4	2	NaN	NaN	NaN	0.039218	1	37335	40.324	39.725	1	6268.1			11336	1584	9548	9796	11336	11336		
LEGELQAPDLELSLPAIHVEGLDIK	25	Unmodified	_LEGELQAPDLELSLPAIHVEGLDIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	900.488247	2698.44291	0.73772	0.00066431	-0.38212	-0.00034409	0.3556	0.00032022	900.822612874341	19.144	0.070919	19.144	19.109	19.179	0	312	52	1.11600111266355	0.0340227398849529	1.11600111266355	673.901495522266	0	20.5447602426781						341	9	4	NaN	NaN	NaN	0.00076897	1	37598	42.072	41.472	1	69105			11337	1584	9549	9797	11337	11337		
LEGFHTQISK	10	Unmodified	_LEGFHTQISK_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.308938	1158.60332	0.94547	0.00054867	0.44117	0.00025601	1.3866	0.00080468	580.309086716994	5.2923	0.14188	5.2923	5.2479	5.3898	0	594	34	0.926715457081489	0.0222931596374992	0.926715457081489	375.600124738186	0	9.03547413250578						343	17	4	NaN	NaN	NaN	0.044272	1	8324	47.334	28.998	1	125630			11338	1560	9550	9798	11338	11338		
LEGLGSSEADQDGLASTVR	19	Unmodified	_LEGLGSSEADQDGLASTVR_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.963433	1903.91231	2.5188	0.0024003	-2.0236	-0.0019284	0.49519	0.0004719	953.462744219105	9.9396	0.24827	9.9396	9.8598	10.108	0	261	43	1.14997238118939	0.0279436470616286	1.14997238118939	463.934001058367	0	11.2733211662493						633	29	5	NaN	NaN	NaN	7.127E-07	1	29688	110.06	102.86	1	254860			11339	1567	9551	9799	11339	11339		
LEGLGSSEADQDGLASTVR	19	Unmodified	_LEGLGSSEADQDGLASTVR_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.644714	1903.91231	0.69545	0.00044206	0.97607	0.00062043	1.6715	0.0010625	635.979475249742	9.9396	0.062052	9.9396	9.913	9.975	0	588	28	0.93076847747433	0.0182348035691394	0.93076847747433	563.248504292595	0	11.0346730523761						84	8	2	NaN	NaN	NaN	0.045531	1	29689	34.472	33.796	1	18239			11340	1567	9551	9799	11340	11340		
LEGLTDEINFLR	12	Unmodified	_LEGLTDEINFLR_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.377549	1418.74054	1.6684	0.0011852	0.29291	0.00020808	1.9613	0.0013933	710.377877701911	16.165	0.26603	16.165	16.103	16.369	0	474	67	1.00756305028564	0.0443433168599838	1.00756305028564	407.485811105273	0	17.9336394210428						1479	31	5	NaN	NaN	NaN	1.8088E-50	1	16068	298.12	250.56	1	2920400		+	11341	28	9552	9800	11341	11341		
LEGMLSQSVSSQYNMAGVR	19	Unmodified	_LEGMLSQSVSSQYNMAGVR_			0	0	0	P54105	P54105	P54105	CLNS1A	Methylosome subunit pICln	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.99316	2055.97176	1.5788	0.0016246	-0.11535	-0.00011869	1.4635	0.0015059	1029.49495829846	12.059	0.14188	12.059	12.024	12.165	0	219	55	1.17788915118882	0.0358535635982185	1.17788915118882	474.942110061311	0	14.4566805215661						472	17	3	NaN	NaN	NaN	4.2957E-07	1	32636	106.47	101.65	1	110600			11342	1249	9553	9801	11342	11342		
LEGNSPQGSNQGVK	14	Unmodified	_LEGNSPQGSNQGVK_			0	0	0	P61006	P61006	P61006	RAB8A	Ras-related protein Rab-8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.849687	1413.68482	2.8133	0.0019914	-1.2986	-0.00091922	1.5147	0.0010721	707.848815427484	2.304	0.14187	2.304	2.2774	2.4193	0	534	19	0.967195187796614	0.0121271162843546	0.967195187796614	391.173464281776	0	4.90470398173284						84	17	2	NaN	NaN	NaN	0.00033072	1	15872	73.655	49.534	1	16322			11343	1319	9554	9802	11343	11343		
LEGQGDVPTPK	11	Unmodified	_LEGQGDVPTPK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.798403	1139.58225	1.773	0.001012	0.89131	0.00050876	2.6643	0.0015208	571.299700789813	4.7869	0.18621	4.7869	4.6716	4.8578	0	615	85	0.912521036363781	0.0568289166670377	0.912521036363781	369.919696999658	0	23.0374257650635						499	22	3	NaN	NaN	NaN	0.045076	1	7778	26.579	15.751	1	124950			11344	3359	9555	9803	11344	11344		
LEGSDVQLLEYEASAAGLIR	20	Unmodified	_LEGSDVQLLEYEASAAGLIR_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.55496	2133.09536	0.1362	0.0001454	0.12471	0.00013314	0.26091	0.00027854	1068.0568300713	18.665	0.035474	18.665	18.648	18.683	0	117	31	1.24546401832526	0.0198286571347865	1.24546401832526	502.067465451661	0	7.99326474670772						110	5	3	NaN	NaN	NaN	0.00421	1	33786	25.511	23.887	1	21523			11345	3109	9556	9804	11345	11345		
LEGTEDLSDVLVR	13	Unmodified	_LEGTEDLSDVLVR_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.377746	1444.74094	1.9127	0.0013836	0.27501	0.00019894	2.1877	0.0015825	723.377737210015	12.955	0.2217	12.955	12.857	13.079	0	456	58	1.01965166402748	0.0382515551187681	1.01965166402748	412.303118481854	0	15.4672777171318						524	26	4	NaN	NaN	NaN	0.00013044	1	16822	94.791	68.935	1	174220			11346	1786	9557	9805	11346	11346		
LEGTNVQEAQK	11	Unmodified	_LEGTNVQEAQK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.812042	1215.60953	1.9498	0.001187	-2.2706	-0.0013824	-0.32082	-0.00019532	608.810565956441	2.969	0.12413	2.969	2.9424	3.0666	0	600	52	0.922661313351899	0.0344817318374574	0.922661313351899	373.750615048379	0	13.9678214483322						258	15	2	NaN	NaN	NaN	0.0052888	1	9888	65.933	43.546	1	64862			11347	2557	9558	9806	11347	11347		
LEGVEGVAHIIDPK	14	Unmodified	_LEGVEGVAHIIDPK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.906473	1475.79839	1.6999	0.0012561	0.60929	0.00045021	2.3092	0.0017063	738.906878145626	11.589	0.21288	11.589	11.483	11.695	0	348	40	1.09197348738011	0.0260532455206195	1.09197348738011	441.458799536117	0	10.5327048911663						497	25	3	NaN	NaN	NaN	3.2225E-05	1	17777	102.03	79.131	1	136270			11348	1737	9559	9807	11348	11348		
LEGVLAEVAQHYQDTLIR	18	Unmodified	_LEGVLAEVAQHYQDTLIR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.700494	2054.07965	0.078653	5.3932E-05	-2.4029	-0.0016477	-2.3243	-0.0015938	686.033240972051	16.617	0.20391	16.617	16.555	16.759	0	648	148	0.890187667287968	0.099361225584731	0.890187667287968	538.406567643572	0	60.0960206367675						1333	24	6	NaN	NaN	NaN	4.2832E-11	1	32602	157.67	139.79	1	690120			11349	1095	9560	9808	11349	11349		
LEGVLAEVAQHYQDTLIR	18	Unmodified	_LEGVLAEVAQHYQDTLIR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.0471	2054.07965	0.41899	0.00043074	-0.29634	-0.00030465	0.12265	0.00012609	1028.54830010174	16.617	0.088671	16.617	16.59	16.679	0	63	106	1.28111162701928	0.0693386086324017	1.28111162701928	516.56611249201	0	27.9585125538056						599	11	4	NaN	NaN	NaN	4.23E-05	1	32604	81.908	73.54	1	137530			11350	1095	9560	9808	11350	11350		
LEHDVNIQFPDK	12	Unmodified	_LEHDVNIQFPDK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.580658	1453.72014	-1.0984	-0.00053337	-1.1642	-0.00056532	-2.2626	-0.0010987	485.580148217709	8.4318	0.13304	8.4318	8.3874	8.5205	0	804	61	0.78414869089473	0.0409034050625265	0.78414869089473	475.582861527367	0	24.8077420159347						544	16	3	NaN	NaN	NaN	0.030556	1	17077	67.881	52.299	1	159110			11351	1498	9561	9809	11351	11351		
LEHENPSDPQTPLVFK	16	Unmodified	_LEHENPSDPQTPLVFK_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.647619	1849.92103	-0.10338	-6.3851E-05	1.3784	0.00085136	1.275	0.00078751	617.648054375103	8.6446	0.070962	8.6446	8.5914	8.6623	0	699	22	0.85560534332665	0.0142556031742478	0.85560534332665	517.873217663585	0	8.62850511998784						89	9	2	NaN	NaN	NaN	0.02317	1	28490	51.569	49.585	1	17032			11352	1966	9562	9810	11352	11352		
LEHEVDLCR	9	Unmodified	_LEHEVDLCR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.857245	1169.54991	-0.97325	-0.0003804	1.211	0.00047331	0.23772	9.2914E-05	390.857715157977	4.3613	0.097556	4.3613	4.3347	4.4322	0	849	22	0.753417699604308	0.014355121376784	0.753417699604308	457.988123396202	0	8.7262020840908						144	12	3	NaN	NaN	NaN	0.019188	1	8596	69.905	53.447	1	35666			11353	2149	9563	9811	11353	11353		
LEHEVDLCR	9	Unmodified	_LEHEVDLCR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.78223	1169.54991	2.0507	0.0012013	6.6191	0.0038774	8.6698	0.0050786	586.288011416729	4.3524	0.18622	4.3524	4.2815	4.4677	0	603	34	0.920633820089869	0.0223055201987317	0.920633820089869	373.094109193561	0	9.03948780399185						279	22	4	NaN	NaN	NaN	0.072202	1	8598	22.044	2.5563	1	57286			11354	2149	9563	9811	11354	11354		
LEHEYIHNFK	10	Unmodified	_LEHEYIHNFK_			0	0	0	Q15555	Q15555	Q15555	MAPRE2	Microtubule-associated protein RP/EB family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.891055	1328.65134	-0.37771	-0.00016766	-0.20971	-9.3088E-05	-0.58742	-0.00026075	443.890852160815	4.3524	0.097543	4.3524	4.3169	4.4145	0	867	25	0.741107305531458	0.0164207262913015	0.741107305531458	449.876499860395	0	9.96792072343527						160	12	3	NaN	NaN	NaN	0.020178	1	13241	39.324	38.067	1	42089			11355	1855	9564	9812	11355	11355		
LEHEYIQNFK	10	Unmodified	_LEHEYIQNFK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.890944	1319.651	-0.96032	-0.0004234	-0.76188	-0.00033591	-1.7222	-0.0007593	440.890692427118	6.0993	0.19507	6.0993	6.055	6.25	0	873	31	0.737001551771189	0.0205316342299018	0.737001551771189	447.415534374943	0	12.4642506904983						348	23	4	NaN	NaN	NaN	0.0042633	1	12959	60.589	43.119	1	148620			11356	1863	9565	9813	11356	11356		
LEHEYIQNFK	10	Unmodified	_LEHEYIQNFK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.832777	1319.651	2.0467	0.0013525	5.5389	0.0036603	7.5856	0.0050128	660.837255380633	6.0904	0.3902	6.0904	6.0106	6.4008	0	504	37	0.987393073566096	0.0242207100839708	0.987393073566096	399.617848988528	0	9.80260883315106						594	45	5	NaN	NaN	NaN	5.4564E-05	1	12963	95.311	77.916	1	259160			11357	1863	9565	9813	11357	11357		
LEHIAIR	7	Unmodified	_LEHIAIR_			0	0	0		REV__Q96N23	REV__Q96N23			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.25852	850.502486	-0.71186	-0.00030344	-0.21916	-9.3419E-05	-0.93102	-0.00039685	426.258698982586	6.2146	0.20399	6.2146	6.1791	6.3831	0	762	34	0.812773098473386	0.0224671474092853	0.812773098473386	330.81892742838	0	9.14468948624841						312	24	3	NaN	NaN	NaN	0.019864	1	1571	64.547	31.576	1	128920	+		11358	3510	9566	9814	11358	11358		
LEHLITELVHQR	12	Unmodified	_LEHLITELVHQR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	372.713679	1486.82561	-2.1357	-0.000796	0.43909	0.00016365	-1.6966	-0.00063234	372.713866704017	9.3544	0.097592	9.3544	9.3011	9.3987	0	828	22	0.767766820543916	0.0143431242639176	0.767766820543916	620.729061762646	0	11.5962214423114						125	12	3	NaN	NaN	NaN	0.036155	1	18149	46.447	39.756	1	33556			11359	1737	9567	9815	11359	11359		
LEHLITELVHQR	12	Unmodified	_LEHLITELVHQR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.615814	1486.82561	-1.497	-0.00074343	0.42694	0.00021203	-1.07	-0.0005314	496.616105961052	9.3366	0.11533	9.3366	9.3011	9.4164	0	756	25	0.816857749704129	0.0163386061083168	0.816857749704129	495.316897381807	0	9.90721785775571						216	14	4	NaN	NaN	NaN	0.0002536	1	18150	70.389	64.893	1	65997			11360	1737	9567	9815	11360	11360		
LEHLTGNK	8	Unmodified	_LEHLTGNK_			0	0	0	Q13464	Q13464	Q13464	ROCK1	Rho-associated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.250892	910.48723	-0.77475	-0.00035348	1.25	0.00057031	0.47525	0.00021683	456.251593615653	5.2391	0.12418	5.2391	5.1947	5.3189	0	750	40	0.820941264895493	0.0265373178651986	0.820941264895493	333.793977638855	0	10.7900495015548						238	15	2	NaN	NaN	NaN	0.017362	1	2518	53.878	24.568	1	87327			11361	1671	9568	9816	11361	11361		
LEHTAQTYSELQGER	15	Unmodified	_LEHTAQTYSELQGER_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.423747	1760.83294	3.5996	0.0031728	-4.2048	-0.0037062	-0.60516	-0.0005334	881.419918925877	4.9731	0.035465	4.9731	4.9642	4.9997	0	345	19	1.09397730668811	0.0120220881701223	1.09397730668811	441.603245817634	0	4.85292804976382						59	5	3	NaN	NaN	NaN	0.041642	1	26163	34.472	33.323	1	8189.5			11362	402	9569	9817	11362	11362		
LEHTHFFSR	9	Unmodified	_LEHTHFFSR_			0	0	0	Q9H0W9	Q9H0W9	Q9H0W9	C11orf54	Ester hydrolase C11orf54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	391.86484	1172.57269	-1.0639	-0.00041689	0.76313	0.00029904	-0.30073	-0.00011785	391.86490888532	4.2549	0.1064	4.2549	4.2283	4.3347	0	843	25	0.757518876820989	0.016402423941871	0.757518876820989	460.467338806941	0	9.9704188682303						145	13	3	NaN	NaN	NaN	0.039588	1	8666	43.734	40.879	1	33530			11363	2852	9570	9818	11363	11363		
LEICNLTPDTLTSDTYK	17	Unmodified	_LEICNLTPDTLTSDTYK_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.482613	1982.95067	2.0043	0.0019892	1.0287	0.001021	3.033	0.0030102	992.984731365053	14.125	0.30149	14.125	14.001	14.302	0	222	73	1.17589687683038	0.0478047656707101	1.17589687683038	474.255895398264	0	19.2803403038013						1035	35	3	NaN	NaN	NaN	8.8715E-05	1	31331	87.727	79.353	1	298160			11364	739	9571	9819	11364	11364		
LEILQIHTK	9	Unmodified	_LEILQIHTK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	365.557125	1093.64954	-1.0497	-0.00038372	-1.8749	-0.00068537	-2.9246	-0.0010691	365.556534894566	8.7422	0.20398	8.7422	8.6891	8.8931	0	873	31	0.737001551771189	0.0205316342299018	0.737001551771189	448.370674257113	0	12.490859294852						403	24	4	NaN	NaN	NaN	0.022514	1	6556	39.324	26.497	1	164750			11365	1265	9572	9820	11365	11365		
LEILQIHTK	9	Unmodified	_LEILQIHTK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.832049	1093.64954	1.043	0.00057137	0.94407	0.00051719	1.987	0.0010886	547.83264041853	8.7422	0.20398	8.7422	8.6891	8.8931	0	582	34	0.934820374997243	0.0222838959578864	0.934820374997243	379.149654879168	0	9.03802664958044						407	24	4	NaN	NaN	NaN	5.6296E-06	1	6557	126.82	96.263	1	183150			11366	1265	9572	9820	11366	11366		
LEILQLLK	8	Unmodified	_LEILQLLK_			0	0	0	Q96AZ6	Q96AZ6	Q96AZ6	ISG20	Interferon-stimulated gene 20 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.320786	968.627018	-1.8449	-0.00089537	-0.33195	-0.0001611	-2.1768	-0.0010565	485.320739457928	16.803	0.097509	16.803	16.768	16.865	0	714	25	0.845418525735192	0.0163045710776146	0.845418525735192	343.439645198134	0	6.62350768944196						173	12	3	NaN	NaN	NaN	0.00072604	1	3610	101.41	43.126	1	42584			11367	2477	9573	9821	11367	11367		
LEILTNLANEANISTLLR	18	Unmodified	_LEILTNLANEANISTLLR_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.565129	1997.11571	0.70041	0.0007001	-1.6081	-0.0016074	-0.90766	-0.00090727	1000.06567913964	19.712	0.035492	19.712	19.694	19.729	0	159	19	1.21767724410157	0.0119167838578353	1.21767724410157	491.082305709027	0	4.80597114045577						52	5	3	NaN	NaN	NaN	0.0019881	1	31589	54.912	51.471	1	7233.8			11368	61	9574	9822	11368	11368		
LEIYVVTAEGLRPVK	15	Unmodified	_LEIYVVTAEGLRPVK_			0	0	1	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.99308	1685.97161	2.0749	0.0017512	0.87913	0.00074198	2.954	0.0024932	843.993856108524	13.487	0.18621	13.487	13.442	13.629	0	207	34	1.18585551256002	0.021902983606175	1.18585551256002	478.85749922831	0	8.8445918108938						444	22	4	NaN	NaN	NaN	2.9434E-05	1	24090	91.245	85.217	1	132040			11369	1884	9575	9823	11369	11369		
LELAQYR	7	Unmodified	_LELAQYR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.747985	891.481417	-0.34428	-0.00015381	-1.1923	-0.00053266	-1.5366	-0.00068647	446.747884178317	6.658	0.19506	6.658	6.5604	6.7555	0	759	52	0.814815566123307	0.0347219621408564	0.814815566123307	331.408221334596	0	14.1223906277301						657	23	4	NaN	NaN	NaN	0.0054947	1	2192	92.319	33.632	1	409790			11370	840	9576	9824	11370	11370		
LELCDER	7	Unmodified	_LELCDER_			0	0	0	P07919	P07919	P07919	UQCRH	Cytochrome b-c1 complex subunit 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.718567	933.422581	0.31393	0.00014683	0.7962	0.0003724	1.1101	0.00051923	467.718997108493	4.8755	0.22167	4.8755	4.8135	5.0351	0	732	37	0.833184998970724	0.0244772608396998	0.833184998970724	338.648548958289	0	9.94879753725519						431	26	3	NaN	NaN	NaN	0.0068453	1	2930	96.51	37.823	1	151990			11371	569	9577	9825	11371	11371		
LELFLPEEYPMAAPK	15	Unmodified	_LELFLPEEYPMAAPK_			0	0	0	P61088	P61088	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.452399	1746.89025	1.4742	0.0012891	-0.72449	-0.00063353	0.7497	0.00065558	874.450800776934	17.043	0.2748	17.043	16.927	17.202	0	279	154	1.13799159301878	0.101886046551937	1.13799159301878	459.399018798054	0	41.1306639717858						2300	32	5	NaN	NaN	NaN	0.00013041	1	25806	92.707	21.901	1	1076200			11372	1328	9578	9826	11372	11372		
LELFLPEEYPMAAPK	15	Oxidation (M)	_LELFLPEEYPM(Oxidation (M))AAPK_	LELFLPEEYPM(1)AAPK	LELFLPEEYPM(70)AAPK	0	1	0	P61088	P61088	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.449856	1762.88516	2.6748	0.0023604	-0.50383	-0.0004446	2.171	0.0019158	882.95155448067	15.491	0.25727	15.491	15.393	15.65	1.7764E-15	288	61	1.13199748998575	0.0399689530119671	1.13199748998575	456.946594793015	0	16.1340260361267						626	30	2	NaN	NaN	NaN	0.0056864	1	26224	70.195	65.378	1	305330			11373	1328	9578	9827	11373	11373	477	
LELIMDEMK	9	Unmodified	_LELIMDEMK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.282686	1120.55082	1.2027	0.00067503	-0.82203	-0.00046139	0.38062	0.00021364	561.282337453568	12.839	0.12417	12.839	12.777	12.901	0	615	43	0.912521036363781	0.0283986853568062	0.912521036363781	369.994800848561	0	11.5146561166659						336	15	3	NaN	NaN	NaN	0.0081985	1	7279	54.436	35.18	1	89258			11374	1842	9579	9828	11374	11374		
LELLECIR	8	Unmodified	_LELLECIR_			0	0	0	O15382	O15382	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.289159	1044.56377	0.078617	4.1139E-05	-1.0503	-0.00054961	-0.97168	-0.00050847	523.288465836956	12.529	0.35467	12.529	12.458	12.813	0	657	55	0.884090832094921	0.0365987959627344	0.884090832094921	358.784064134578	0	14.8526195287276						551	41	3	NaN	NaN	NaN	0.013463	1	5348	65.313	4.7233	1	152800			11375	171	9580	9829	11375	11375		
LELLHPIIPEQSTFK	15	Unmodified	_LELLHPIIPEQSTFK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.001334	1763.98217	0.3321	0.00019561	-1.9068	-0.0011231	-1.5747	-0.00092749	589.334325137311	13.903	0.079816	13.903	13.868	13.948	1.7764E-15	708	136	0.849494101904619	0.0915670573893794	0.849494101904619	514.360455927288	0	55.4429669153954						624	10	4	NaN	NaN	NaN	1.9169E-06	1	26249	99.589	81.491	1	166550			11376	3359	9581	9830	11376	11376		
LELLHPIIPEQSTFK	15	Unmodified	_LELLHPIIPEQSTFK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.998362	1763.98217	2.8184	0.0024887	-0.39619	-0.00034983	2.4223	0.0021388	883.49958136463	13.903	0.15073	13.903	13.85	14.001	0	222	76	1.17589687683038	0.0498479746966392	1.17589687683038	474.664891432315	0	20.1217334306383						909	18	5	NaN	NaN	NaN	3.111E-09	1	26251	112.95	104.58	1	382820			11377	3359	9581	9830	11377	11377		
LELPLWLAK	9	Unmodified	_LELPLWLAK_			0	0	0	Q9BRX5	Q9BRX5	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.83406	1081.65357	-0.41894	-0.00022699	-0.82246	-0.00044564	-1.2414	-0.00067263	541.83371869145	17.442	0.10642	17.442	17.397	17.504	0	642	55	0.894250814548268	0.0365784873736561	0.894250814548268	362.74527783023	0	14.8377539601897						354	13	3	NaN	NaN	NaN	0.011874	1	6254	47.349	29.954	1	92998			11378	2717	9582	9831	11378	11378		
LELQGPR	7	Unmodified	_LELQGPR_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.734877	811.455202	-0.41285	-0.00016792	-0.21452	-8.7252E-05	-0.62737	-0.00025517	406.734978777316	5.0883	0.42568	5.0883	4.9997	5.4254	0	825	61	0.769815552739974	0.0409603971244045	0.769815552739974	313.573291554943	0	16.6846285502828						966	49	4	NaN	NaN	NaN	0.01214	1	1104	88.201	58.891	1	591060			11379	764	9583	9832	11379	11379		
LELSGCEQGLHEIK	14	Unmodified	_LELSGCEQGLHEIK_			0	0	0	P16455	P16455	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.903605	1611.79266	2.8531	0.0023022	-1.1538	-0.00093099	1.6994	0.0013712	806.902887098906	7.8374	0.062063	7.8374	7.8108	7.8729	0	267	28	1.14597988355104	0.0179724190816779	1.14597988355104	462.929011245533	0	7.26012237613679						188	8	4	NaN	NaN	NaN	2.7141E-11	1	21952	133.07	111.92	1	43652			11380	729	9584	9833	11380	11380		
LELSGCEQGLHEIK	14	Unmodified	_LELSGCEQGLHEIK_			0	0	0	P16455	P16455	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.271495	1611.79266	1.1903	0.0006407	0.96528	0.00051958	2.1556	0.0011603	538.272412897185	7.8374	0.10642	7.8374	7.7842	7.8906	0	636	28	0.898312834727904	0.0182778248645526	0.898312834727904	544.319570308698	0	11.0751815980281						199	13	3	NaN	NaN	NaN	0.00028554	1	21953	64.266	59.437	1	63660			11381	729	9584	9833	11381	11381		
LELSVHLQPITR	12	Unmodified	_LELSVHLQPITR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.276909	1404.8089	-0.57227	-0.00026855	-0.88379	-0.00041474	-1.4561	-0.0006833	469.276333824689	11.669	0.14189	11.669	11.607	11.749	0	687	46	0.863749705078866	0.0305350029488345	0.863749705078866	524.032204200499	0	18.5254186559583						376	17	2	NaN	NaN	NaN	0.00076113	1	15622	83.438	78.287	1	205160			11382	350	9585	9834	11382	11382		
LELSVLYK	8	Unmodified	_LELSVLYK_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.789318	963.564084	-1.2164	-0.00058729	-0.89866	-0.00043386	-2.1151	-0.0010211	482.789006040929	12.05	0.15961	12.05	12.015	12.174	0	726	28	0.837263974740672	0.0183515663260597	0.837263974740672	340.151986443205	0	7.45561964741984						211	19	3	NaN	NaN	NaN	0.013237	1	3516	51.43	35.932	1	48965			11383	2529	9586	9835	11383	11383		
LEMDGHLNR	9	Unmodified	_LEMDGHLNR_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	362.178319	1083.51313	-0.28372	-0.00010276	-0.90522	-0.00032785	-1.1889	-0.00043061	362.177934733288	4.379	0.079807	4.379	4.3524	4.4322	0	879	22	0.732894652678068	0.0143771552122494	0.732894652678068	445.923949056769	0	8.74766626420524						112	10	2	NaN	NaN	NaN	0.0069452	1	6294	42.835	15.13	1	35468			11384	2709	9587	9836	11384	11384		
LEMEGITVK	9	Unmodified	_LEMEGITVK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.275718	1018.53688	0.17551	8.9557E-05	-0.61928	-0.000316	-0.44378	-0.00022645	510.776822645665	9.576	0.27487	9.576	9.4696	9.7445	0	690	55	0.86171403876517	0.0366496414922302	0.86171403876517	349.81928013997	0	14.8781969742213						749	32	5	NaN	NaN	NaN	0.0030766	1	4709	62.969	9.2896	1	337800			11385	2110	9588	9837	11385	11385		
LEMEMEAAR	9	Unmodified	_LEMEMEAAR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.246634	1078.47872	1.1023	0.0005955	0.38543	0.00020823	1.4877	0.00080373	540.246791431961	6.7732	0.25713	6.7732	6.72	6.9771	0	657	61	0.884090832094921	0.0406371291236521	0.884090832094921	358.637238071948	0	16.4847176590956						720	30	4	NaN	NaN	NaN	0.00085369	1	6162	94.806	58.237	1	291830			11386	1824	9589	9838	11386	11386		
LEMYNILK	8	Unmodified	_LEMYNILK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.280803	1022.54705	0.086486	4.4305E-05	-1.1824	-0.0006057	-1.0959	-0.0005614	512.280901287196	12.423	0.31031	12.423	12.334	12.644	0	681	49	0.867820189810857	0.0325548466595607	0.867820189810857	352.279700715911	0	13.2151933922878						849	36	5	NaN	NaN	NaN	0.0025591	1	4805	93.561	61.433	1	572440			11387	857	9590	9839	11387	11387		
LENDQIESLR	10	Unmodified	_LENDQIESLR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.812042	1215.60953	1.6001	0.00097419	0.38771	0.00023604	1.9879	0.0012102	608.811957141423	6.9328	0.33702	6.9328	6.8087	7.1457	0	570	58	0.942920803299286	0.038485045404303	0.942920803299286	381.957295207825	0	15.5894787739795						727	39	4	NaN	NaN	NaN	2.7635E-07	1	9891	147.78	115.65	1	354810			11388	1284	9591	9840	11388	11388		
LENGELEHIRPK	12	Unmodified	_LENGELEHIRPK_			0	0	1	Q15102	Q15102	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.928169	1433.76268	-0.64661	-0.00030968	0.94059	0.00045047	0.29398	0.00014079	478.928539419637	4.7691	0.079796	4.7691	4.7425	4.8223	0	813	22	0.778007628350577	0.0143311421844247	0.778007628350577	471.92015062045	0	8.6929157655884						99	10	3	NaN	NaN	NaN	0.0060325	1	16503	44.57	32.613	1	20531			11389	1812	9592	9841	11389	11389		
LENLDENSQELLSK	14	Unmodified	_LENLDENSQELLSK_			0	0	0	P10911	P10911	P10911	MCF2	Proto-oncogene DBL;MCF2-transforming protein;DBL-transforming protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.409774	1630.805	1.9781	0.001615	6.0659	0.0049523	8.0441	0.0065673	816.415144730183	7.0037	0.088658	7.0037	6.9683	7.0569	0	411	31	1.04982941439551	0.0200976833254141	1.04982941439551	424.045998257929	0	8.1178352135467						191	11	3	NaN	NaN	NaN	0.0092264	1	22516	27.378	14.796	1	44041			11390	637	9593	9842	11390	11390		
LENLGIPEEELLR	13	Unmodified	_LENLGIPEEELLR_			0	0	0	Q01658	Q01658	Q01658	DR1	Protein Dr1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.917038	1523.81952	0.63793	0.00048669	-0.54842	-0.0004184	0.089504	6.8284E-05	762.915952430515	14.826	0.18623	14.826	14.701	14.888	0	396	52	1.05987478976334	0.0341307405307956	1.05987478976334	428.356613962596	0	13.7942034163036						449	22	4	NaN	NaN	NaN	0.0046327	1	19247	47.361	40.221	1	153680			11391	1519	9594	9843	11391	11391		
LENTEDIEEVEQHIQTIK	18	Unmodified	_LENTEDIEEVEQHIQTIK_			0	0	0	Q9NUN5	Q9NUN5	Q9NUN5	LMBRD1	Probable lysosomal cobalamin transporter	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.362096	2167.06446	1.0842	0.00078424	-0.55905	-0.00040439	0.52512	0.00037985	723.696680093681	12.981	0.12416	12.981	12.937	13.061	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	593.327995324691	0	9.76680618306739						252	15	4	NaN	NaN	NaN	3.6794E-05	1	34269	74.733	67.526	1	69503			11392	3053	9595	9844	11392	11392		
LENYPIPEPGPNEVLLR	17	Unmodified	_LENYPIPEPGPNEVLLR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.52019	1949.02583	2.3789	0.0023207	-1.3651	-0.0013317	1.0138	0.00098894	976.020489426091	14.533	0.26602	14.533	14.444	14.71	0	216	61	1.17988115188462	0.0398591940007655	1.17988115188462	475.920389067019	0	16.0777236643215						1203	31	5	NaN	NaN	NaN	0.0075049	1	30704	31.801	29.959	1	459460			11393	1508	9596	9845	11393	11393		
LEPHEGLLLR	10	Unmodified	_LEPHEGLLLR_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	392.896029	1175.66626	-1.5563	-0.00061145	-0.42783	-0.00016809	-1.9841	-0.00077954	392.895886219038	7.5358	0.22172	7.5358	7.4915	7.7132	8.8818E-16	882	52	0.730840773481911	0.0349013525029648	0.730840773481911	444.237156699416	0	21.2145766402904						812	26	4	NaN	NaN	NaN	0.0028664	1	8769	60.589	51.196	1	321370			11394	576	9597	9846	11394	11394		
LEPLQAYHR	9	Unmodified	_LEPLQAYHR_			0	0	0	Q9H488	Q9H488	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.803823	1125.59309	1.416	0.00079836	0.42887	0.0002418	1.8449	0.0010402	563.803910425415	5.4962	0.12411	5.4962	5.4608	5.5849	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	381.479112283578	0	8.2106421033651						146	15	2	NaN	NaN	NaN	0.042914	1	7412	47.349	15.397	1	44399			11395	2890	9598	9847	11395	11395		
LEPLVNDLTLR	11	Unmodified	_LEPLVNDLTLR_			0	0	0	Q70UQ0	Q70UQ0	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.871902	1281.72925	0.72428	0.0004649	-1.3608	-0.00087349	-0.63656	-0.00040859	641.871105595104	14.063	0.14186	14.063	14.019	14.161	0	543	34	0.961130371139249	0.0222438199941358	0.961130371139249	389.108062877345	0	9.00528166501624						257	17	3	NaN	NaN	NaN	0.0057291	1	11826	55.235	40.472	1	73283			11396	2103	9599	9848	11396	11396		
LEPQIASASEYAHR	14	Unmodified	_LEPQIASASEYAHR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.5986	1570.77397	0.82234	0.0004314	0.4448	0.00023334	1.2671	0.00066474	524.599077714079	6.8441	0.2217	6.8441	6.7909	7.0126	0	690	79	0.86171403876517	0.0529457462841577	0.86171403876517	522.259081683714	0	32.0888317811875						847	26	5	NaN	NaN	NaN	0.0012069	1	20682	83.775	77.028	1	429590			11397	272	9600	9849	11397	11397		
LEPQIASASEYAHR	14	Unmodified	_LEPQIASASEYAHR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.394261	1570.77397	2.8391	0.0022326	-1.082	-0.00085088	1.7571	0.0013817	786.393431114865	6.8441	0.19505	6.8441	6.7909	6.986	0	303	55	1.12200181823275	0.0360116819912435	1.12200181823275	453.343686555053	0	14.5504832591742						749	23	4	NaN	NaN	NaN	4.538E-08	1	20683	128.57	121.82	1	327230			11398	272	9600	9849	11398	11398		
LEQDQLWIGTK	11	Unmodified	_LEQDQLWIGTK_			0	0	0	O14562	O14562	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.853709	1329.69287	1.6386	0.0010911	-6.6444	-0.0044242	-5.0057	-0.0033331	665.849482267046	10.809	0.18623	10.809	10.711	10.897	0	528	52	0.971237000454584	0.0343340389599219	0.971237000454584	393.048449011915	0	13.8945908724604						505	22	4	NaN	NaN	NaN	7.2735E-05	1	13282	69.276	45.44	1	198010			11399	105	9601	9850	11399	11399		
LEQEIATYR	9	Unmodified	_LEQEIATYR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2;CON__P19012;P19012;CON__P08779;CON__A2A4G1;P08779;CON__ENSEMBL:ENSP00000377550;CON__Q9Z2K1;CON__Q3ZAW8;CON__P08730-1;CON__Q61782;P13646	Q04695	Q04695	KRT17;KRT14;KRT15;KRT16;KRT13	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16;Keratin, type I cytoskeletal 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.793121	1121.57169	1.5523	0.00087205	1.7639	0.00099096	3.3162	0.001863	561.794190610746	5.8243	0.1596	5.8243	5.7445	5.9041	0	606	43	0.918606045818476	0.0283947491785544	0.918606045818476	372.45792415779	0	11.5129324307924						491	19	4	NaN	NaN	NaN	2.8014E-05	1	7312	114.64	71.804	1	349740		+	11400	36	9602	9851	11400	11400		
LEQELFSGGNTGINFEK	17	Unmodified	_LEQELFSGGNTGINFEK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.962705	1881.91086	2.1608	0.0020354	1.4015	0.0013202	3.5624	0.0033556	941.96470067589	13.292	0.16852	13.292	13.23	13.398	0	252	91	1.15595906938629	0.0598134788155047	1.15595906938629	466.388645715384	0	24.1326255566293						1058	20	6	NaN	NaN	NaN	1.5636E-44	1	29184	239.37	209.02	1	616610			11401	93	9603	9852	11401	11401		
LEQENDDLAHELVTSK	16	Unmodified	_LEQENDDLAHELVTSK_			0	0	0	Q9Y3P9;B7ZAP0	Q9Y3P9	Q9Y3P9	RABGAP1;RABGAP1L	Rab GTPase-activating protein 1;Rab GTPase-activating protein 1-like, isoform 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.302289	1839.88504	0.43537	0.00026745	1.6254	0.00099848	2.0608	0.0012659	614.303773316688	8.7778	0.13314	8.7778	8.6979	8.831	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	546.202918460476	0	13.5182917961298						246	16	3	NaN	NaN	NaN	0.00010474	1	28219	70.598	38.547	1	78195			11402	3397	9604	9853	11402	11402		
LEQFVSILMASIPLPDK	17	Unmodified	_LEQFVSILMASIPLPDK_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.026262	1900.03797	1.2842	0.0012213	-0.23317	-0.00022175	1.051	0.00099957	951.52755597518	20.137	0.053219	20.137	20.128	20.182	0	237	40	1.16593139812432	0.0259138095878944	1.16593139812432	470.379289248257	0	10.4545767918059						149	7	5	NaN	NaN	NaN	0.0032066	1	29609	40.53	35.713	1	42033			11403	480	9605	9854	11403	11403		
LEQGQAIDDLMPAQK	15	Unmodified	_LEQGQAIDDLMPAQK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.916712	1655.81887	3.125	0.0025903	-0.62481	-0.00051792	2.5001	0.0020724	828.915261555627	10.968	0.23056	10.968	10.782	11.012	0	366	52	1.07994477139643	0.0340931168353487	1.07994477139643	436.154676037941	0	13.7691044230138						453	27	2	NaN	NaN	NaN	0.00011445	1	23223	110.91	88.008	1	540850			11404	668	9606	9855	11404	11404		
LEQGQAIDDLMPAQK	15	Oxidation (M)	_LEQGQAIDDLM(Oxidation (M))PAQK_	LEQGQAIDDLM(1)PAQK	LEQGQAIDDLM(72)PAQK	0	1	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.914169	1671.81379	2.8524	0.0023872	0.34847	0.00029164	3.2009	0.0026789	836.913825145653	7.8906	0.23059	7.8906	7.7309	7.9615	0	372	58	1.07593298845566	0.0381145809986698	1.07593298845566	434.499942607913	0	15.3920210962368						794	27	5	NaN	NaN	NaN	7.9061E-06	1	23663	72.327	60.845	1	177920			11405	668	9606	9856	11405	11405	201	
LEQIDGHIAEHNSK	14	Unmodified	_LEQIDGHIAEHNSK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.897168	1589.77978	2.7714	0.0022058	-3.2895	-0.0026181	-0.51808	-0.00041234	795.894640515268	3.7228	0.026599	3.7228	3.714	3.7406	0	375	13	1.07392668217569	0.0080268850446803	1.07392668217569	433.87365073316	0	3.24291590492498						25	4	2	NaN	NaN	NaN	9.522E-05	1	21272	72.031	60.013	1	3642.3			11406	3042	9607	9857	11406	11406		
LEQIDGHIAEHNSK	14	Unmodified	_LEQIDGHIAEHNSK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.933871	1589.77978	0.60407	0.00032072	1.8272	0.00097014	2.4313	0.0012909	530.934799176583	3.7228	0.088659	3.7228	3.6962	3.7849	0	744	31	0.82502364452135	0.020406225036543	0.82502364452135	499.969951275884	0	12.3663114445214						168	11	4	NaN	NaN	NaN	3.9893E-05	1	21274	103.76	56.199	1	47627			11407	3042	9607	9857	11407	11407		
LEQLFQDEVAK	11	Unmodified	_LEQLFQDEVAK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.345717	1318.67688	1.3526	0.0008932	-8.8587	-0.0058498	-7.506	-0.0049566	660.339828717855	10.081	0.17734	10.081	10.019	10.197	0	510	13	0.983355730988811	0.00807356879308341	0.983355730988811	397.98696103617	0	3.26756127759046						135	21	2	NaN	NaN	NaN	0.00019895	1	12935	81.335	54.879	1	165220			11408	1816	9608	9858	11408	11408		
LEQLGIPR	8	Unmodified	_LEQLGIPR_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.276909	924.539266	-0.99833	-0.0004625	-2.2581	-0.0010461	-3.2564	-0.0015086	463.275887367005	8.1922	0.10641	8.1922	8.1302	8.2366	0	759	40	0.814815566123307	0.0265410084545386	0.814815566123307	331.228454699525	0	10.7891129993869						175	13	2	NaN	NaN	NaN	0.0036637	1	2788	60.709	33.004	1	42045			11409	1573	9609	9859	11409	11409		
LEQLILSDTGISSLHFPDAGIGCK	24	Unmodified	_LEQLILSDTGISSLHFPDAGIGCK_			0	0	0	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.775623	2570.30504	0.33144	0.0002843	-2.1654	-0.0018575	-1.834	-0.0015732	858.108480999974	17.246	0.070976	17.246	17.211	17.282	0	486	31	0.999498404980629	0.0201616152840689	0.999498404980629	603.70510497384	0	12.1777783844957						234	9	4	NaN	NaN	NaN	0.00046126	1	37113	40.324	33.335	1	46729			11410	1870	9610	9860	11410	11410		
LEQMPSK	7	Unmodified	_LEQMPSK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.715296	831.416039	-0.71479	-0.00029786	-4.8506	-0.0020213	-5.5654	-0.0023192	416.713873632077	2.8981	0.31035	2.8981	2.836	3.1464	0	840	28	0.759569036796863	0.0184488704959693	0.759569036796863	309.276174997995	0	7.51188611385265						307	36	3	NaN	NaN	NaN	0.032985	1	1328	56.014	17.692	1	79817			11411	611	9611	9861	11411	11411		
LEQQVPVNQVFGQDEMIDVIGVTK	24	Unmodified	_LEQQVPVNQVFGQDEMIDVIGVTK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1343.69146	2685.36837	0.75554	0.0010152	-0.81505	-0.0010952	-0.059509	-7.9962E-05	1344.19254036106	17.849	0.044346	17.849	17.823	17.867	0	72	34	1.27517645957152	0.0217712237935928	1.27517645957152	513.360558805406	0	8.76465961135432						90	6	2	NaN	NaN	NaN	0.06893	1	37563	14.408	12.982	1	19483			11412	1010	9612	9862	11412	11412		
LEQQVPVNQVFGQDEMIDVIGVTK	24	Unmodified	_LEQQVPVNQVFGQDEMIDVIGVTK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.130066	2685.36837	1.8592	0.0016661	0.89124	0.00079867	2.7505	0.0024648	896.4650823717	17.849	0.14187	17.849	17.796	17.938	0	354	76	1.08796502040166	0.0501646095861548	1.08796502040166	656.988186565716	0	30.292845140938						812	17	6	NaN	NaN	NaN	5.1692E-13	1	37564	109.82	105.38	1	286580			11413	1010	9612	9862	11413	11413		
LEQSTIVK	8	Unmodified	_LEQSTIVK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.26875	916.522947	0.80244	0.00036854	0.51723	0.00023755	1.3197	0.00060608	459.26898602646	3.8026	0.21282	3.8026	3.7672	3.98	0	756	34	0.816857749704129	0.0224671474092853	0.816857749704129	332.101123741728	0	9.1342279663715						347	25	3	NaN	NaN	NaN	0.016378	1	2644	62.969	27.336	1	208030			11414	1530	9613	9863	11414	11414		
LEQYTSAIEGTK	12	Unmodified	_LEQYTSAIEGTK_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.340632	1338.66671	1.7763	0.0011907	0.24949	0.00016724	2.0258	0.001358	670.341005148973	6.7466	0.29261	6.7466	6.6668	6.9594	0	501	46	0.98941132619024	0.0302737974651172	0.98941132619024	400.375752211828	0	12.2506121686283						609	34	4	NaN	NaN	NaN	2.1832E-07	1	13556	117.45	88.137	1	243180			11415	1554	9614	9864	11415	11415		
LESALTELEQLR	12	Unmodified	_LESALTELEQLR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.382831	1400.75111	0.88471	0.00062052	0.33696	0.00023634	1.2217	0.00085686	701.383929265908	15.047	0.12415	15.047	14.994	15.118	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	410.796493032273	0	8.9623538333629						313	15	4	NaN	NaN	NaN	0.0078634	1	15479	62.271	30.131	1	96938			11416	667	9615	9865	11416	11416		
LESALTELEQLRK	13	Unmodified	_LESALTELEQLRK_			0	0	1	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.622634	1528.84607	-2.1703	-0.0011082	-0.17952	-9.1668E-05	-2.3499	-0.0011999	510.62256532891	12.352	0.11526	12.352	12.316	12.431	0	792	31	0.792332785124922	0.0204545420260502	0.792332785124922	480.32410084074	0	12.3998522984539						196	14	2	NaN	NaN	NaN	2.1287E-07	1	19401	106	87.496	1	126520			11417	667	9616	9866	11417	11417		
LESCGVTSDNCR	12	Unmodified	_LESCGVTSDNCR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.292833	1396.57111	2.5854	0.0018079	-2.5629	-0.0017922	0.022487	1.5725E-05	699.291273011552	3.0755	0.24827	3.0755	3.0222	3.2705	0	564	67	0.946969335010767	0.0445092174223279	0.946969335010767	383.038768211543	0	18.0034930226272						693	29	5	NaN	NaN	NaN	2.17E-07	1	15329	120.65	111.14	1	162610			11418	678	9617	9867	11418	11418		
LESEHPDQAQAILSR	15	Unmodified	_LESEHPDQAQAILSR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.428832	1692.84311	2.5793	0.0021858	-2.2381	-0.0018966	0.34125	0.00028919	847.426393082948	6.4895	0.10641	6.4895	6.454	6.5604	0	354	46	1.08796502040166	0.0300738688612157	1.08796502040166	439.314044154671	0	12.1436560046023						351	13	4	NaN	NaN	NaN	0.019656	1	24284	23.931	21.947	1	103010			11419	1511	9618	9868	11419	11419		
LESEHPDQAQAILSR	15	Unmodified	_LESEHPDQAQAILSR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.288314	1692.84311	-0.33565	-0.00018974	1.4062	0.0007949	1.0705	0.00060516	565.289023310279	6.4895	0.15077	6.4895	6.4451	6.5959	0	753	46	0.81889964927511	0.0306370230473841	0.81889964927511	495.998072669216	0	18.5564915032951						460	18	4	NaN	NaN	NaN	6.2014E-12	1	24285	174.05	154.49	1	168930			11420	1511	9618	9868	11420	11420		
LESELANFGPR	11	Unmodified	_LESELANFGPR_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.817127	1231.6197	1.4795	0.00091256	-1.5374	-0.0009483	-0.057951	-3.5745E-05	616.817058200318	10.081	0.266	10.081	9.9484	10.214	0	570	82	0.942920803299286	0.0546892991829049	0.942920803299286	381.901559124789	0	22.1502469266915						669	27	2	NaN	NaN	NaN	1.0944E-06	1	10362	100.84	63.114	1	202430			11421	1764	9619	9869	11421	11421		
LESEMEDAYHEHQANLLR	18	Unmodified	_LESEMEDAYHEHQANLLR_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.004137	2183.99058	1.4549	0.0010606	0.74252	0.0005413	2.1974	0.0016019	729.338965803467	8.4051	0.13298	8.4051	8.3697	8.5027	0	531	40	0.969216233931596	0.0262736050362692	0.969216233931596	585.970945573855	0	15.8845556313941						462	16	5	NaN	NaN	NaN	2.5704E-10	1	34501	108.91	85.765	1	173530			11422	814	9620	9870	11422	11422		
LESEMEDAYHEHQANLLR	18	Unmodified	_LESEMEDAYHEHQANLLR_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	547.004922	2183.99058	0.86139	0.00047119	2.8894	0.0015805	3.7508	0.0020517	547.257351760352	8.414	0.21281	8.414	8.352	8.5648	0	645	46	0.892219381832517	0.030475726379646	0.892219381832517	719.224582333018	0	24.5667063762695						776	25	6	NaN	NaN	NaN	1.1481E-10	1	34502	130.71	124.81	1	476560			11423	814	9620	9870	11423	11423		
LESESTSPSLEMK	13	Unmodified	_LESESTSPSLEMK_			0	0	0	Q5VT52	Q5VT52	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.342514	1436.67048	1.679	0.0012078	3.7468	0.0026953	5.4258	0.003903	719.346609729798	6.6136	0.23055	6.6136	6.4806	6.7111	0	495	34	0.993446994398923	0.0221885084340552	0.993446994398923	401.728469329281	0	8.97255271813071						265	27	2	NaN	NaN	NaN	0.0063064	1	16579	66.664	60.798	1	66921			11424	2007	9621	9871	11424	11424		
LESGMQNMSIHTK	13	Unmodified	_LESGMQNMSIHTK_			0	0	0	P05787;CON__P05787;CON__REFSEQ:XP_092267	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.352693	1474.69083	2.2298	0.0016464	-1.5913	-0.0011749	0.6385	0.00047144	738.351879587711	5.4785	0.32812	5.4785	5.443	5.7711	0	405	82	1.05384839605172	0.054290000317103	1.05384839605172	426.048716717269	0	21.9483039992658						1008	38	5	NaN	NaN	NaN	1.7275E-11	1	17726	178.65	165.38	1	498600		+	11425	28	9622	9872	11425	11425		
LESGMQNMSIHTK	13	Unmodified	_LESGMQNMSIHTK_			0	0	0	P05787;CON__P05787;CON__REFSEQ:XP_092267	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.570888	1474.69083	0.012186	6.0025E-06	0.76211	0.00037539	0.77429	0.00038139	492.571606123259	5.4785	0.21289	5.4785	5.4342	5.6471	0	735	76	0.831145085810763	0.0510475277821484	0.831145085810763	504.01847731116	0	30.9559638413305						790	25	5	NaN	NaN	NaN	0.00020251	1	17727	92.707	89.202	1	672820		+	11426	28	9622	9872	11426	11426		
LESGMQNMSIHTK	13	Oxidation (M)	_LESGM(Oxidation (M))QNMSIHTK_	LESGM(1)QNMSIHTK	LESGM(45)QNM(-45)SIHTK	0	1	0	P05787;CON__P05787;CON__REFSEQ:XP_092267	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.350151	1490.68575	2.2397	0.0016716	-1.0976	-0.00081918	1.1421	0.00085241	746.349355638434	3.5455	0.062101	3.5455	3.5189	3.581	-4.4409E-16	447	28	1.02569221487577	0.0181166496995924	1.02569221487577	414.624400801929	0	7.32344939085033						127	8	3	NaN	NaN	NaN	0.00018337	1	18241	121.71	93.615	2	23601		+	11427	28	9622	9873	11427	11427	9;10	
LESGMQNMSIHTK	13	Oxidation (M)	_LESGMQNM(Oxidation (M))SIHTK_	LESGMQNM(1)SIHTK	LESGM(-35)QNM(35)SIHTK	0	1	0	P05787;CON__P05787;CON__REFSEQ:XP_092267	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.350151	1490.68575	2.3819	0.0017778	-0.99607	-0.00074342	1.3859	0.0010343	746.349457900335	3.3503	0.044322	3.3503	3.3326	3.3769	0	420	31	1.04379886199097	0.0201115556839417	1.04379886199097	421.943806367432	0	8.12986741628231						73	6	2	NaN	NaN	NaN	0.0011205	1	18242	91.245	82.268	2	12798		+	11428	28	9622	9873	11428	11428	9;10	
LESGMQNMSIHTK	13	Oxidation (M)	_LESGM(Oxidation (M))QNMSIHTK_	LESGM(1)QNMSIHTK	LESGM(51)QNM(-51)SIHTK	0	1	0	P05787;CON__P05787;CON__REFSEQ:XP_092267	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.902526	1490.68575	0.050321	2.5055E-05	2.0153	0.0010034	2.0657	0.0010285	497.903569882056	3.5366	0.097541	3.5366	3.51	3.6076	0	756	37	0.816857749704129	0.0245113207191667	0.816857749704129	495.30507798508	0	14.8625407847592						244	12	4	NaN	NaN	NaN	0.0031796	1	18243	86.243	67.906	2	62812		+	11429	28	9622	9873	11429	11429	9;10	
LESIDGNEEESMK	13	Unmodified	_LESIDGNEEESMK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.827228	1479.6399	2.2002	0.00163	0.12643	9.3662E-05	2.3266	0.0017236	740.827459443154	5.9307	0.13305	5.9307	5.9041	6.0372	0	417	46	1.04580932352505	0.0301569310517751	1.04580932352505	422.785536088864	0	12.1914329646099						428	16	4	NaN	NaN	NaN	3.3009E-05	1	17886	79.889	67.293	1	108260			11430	2355	9623	9874	11430	11430		
LESIDGNEEESMK	13	Oxidation (M)	_LESIDGNEEESM(Oxidation (M))K_	LESIDGNEEESM(1)K	LESIDGNEEESM(54)K	0	1	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.824686	1495.63482	1.7538	0.0013133	-0.57244	-0.00042866	1.1813	0.0008846	748.82464163779	4.2105	0.079805	4.2105	4.1928	4.2726	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	401.577412204095	0	6.52439147508926						107	10	3	NaN	NaN	NaN	0.012257	1	18402	54.27	51.969	1	18547			11431	2355	9623	9875	11431	11431	596	
LESIISGAALMADSSCTR	18	Unmodified	_LESIISGAALMADSSCTR_			0	0	0	P26232;P35221	P26232;P35221	P35221	CTNNA2;CTNNA1	Catenin alpha-2;Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.455875	1880.8972	2.0678	0.0019467	1.2419	0.0011692	3.3097	0.0031159	941.457147601848	14.311	0.21279	14.311	14.223	14.435	0	234	55	1.16792504164217	0.0358929954231473	1.16792504164217	471.218351743268	0	14.4816127228873						562	25	4	NaN	NaN	NaN	0.001354	1	29162	58.338	47.853	1	138440			11432	959;848	9624	9876	11432	11432		
LESILAQDQDLK	12	Unmodified	_LESILAQDQDLK_			0	0	0	Q13206	Q13206	Q13206	DDX10	Probable ATP-dependent RNA helicase DDX10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.869556	1371.72456	1.2483	0.00085741	0.24499	0.00016828	1.4933	0.0010257	686.869996105459	8.5559	0.13302	8.5559	8.5027	8.6357	0	486	25	0.999498404980629	0.0161359806819593	0.999498404980629	404.35798001342	0	6.52798695983824						193	16	4	NaN	NaN	NaN	0.057369	1	14547	25.857	5.623	1	59196			11433	1643	9625	9877	11433	11433		
LESLPNEIAYLK	12	Unmodified	_LESLPNEIAYLK_			0	0	0	Q9UQ13	Q9UQ13	Q9UQ13	SHOC2	Leucine-rich repeat protein SHOC-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.384842	1388.75513	1.4999	0.001043	-0.47188	-0.00032814	1.0281	0.0007149	695.384325940583	13.575	0.10643	13.575	13.513	13.62	1.7764E-15	450	34	1.02367897599655	0.0221517485964946	1.02367897599655	414.089819449612	0	8.96063491768598						161	13	2	NaN	NaN	NaN	0.0074371	1	15116	51.872	28.819	1	47983			11434	3317	9626	9878	11434	11434		
LESLSAATTFEPLEPVK	17	Unmodified	_LESLSAATTFEPLEPVK_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.488024	1830.9615	1.0522	0.00096432	1.6796	0.0015393	2.7318	0.0025036	916.990916806649	14.799	0.15964	14.799	14.728	14.888	1.7764E-15	210	112	1.18386433251387	0.0736940211916792	1.18386433251387	477.744686291531	0	29.7389878796503						1203	19	4	NaN	NaN	NaN	1.3569E-35	1	28009	230.23	203.77	1	336840			11435	2239	9627	9879	11435	11435		
LESLSYQLSGLQK	13	Unmodified	_LESLSYQLSGLQK_			0	0	0	Q03252	Q03252	Q03252	LMNB2	Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.398481	1464.78241	1.0912	0.00080029	1.2925	0.00094791	2.3837	0.0017482	733.399540380817	11.74	0.16847	11.74	11.66	11.828	0	423	40	1.04178812298108	0.0261396123563653	1.04178812298108	421.199473597053	0	10.5683590757658						406	20	4	NaN	NaN	NaN	1.2846E-07	1	17422	142.71	123.39	1	165390			11436	1537	9628	9880	11436	11436		
LESPTVSTLTPSSPGK	16	Unmodified	_LESPTVSTLTPSSPGK_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.92506	1599.83557	2.0999	0.0016819	-0.86725	-0.0006946	1.2326	0.00098725	800.924438355397	8.7422	0.2573	8.7422	8.618	8.8753	0	384	55	1.06790610341098	0.036135940918625	1.06790610341098	431.41786639164	0	14.598371974252						966	30	4	NaN	NaN	NaN	5.282E-12	1	21581	152.23	83.736	1	395700			11437	2490	9629	9881	11437	11437		
LESTLNYGMER	11	Unmodified	_LESTLNYGMER_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.813727	1311.6129	1.6063	0.001055	-0.23017	-0.00015118	1.3761	0.00090386	656.813496295943	7.6422	0.19516	7.6422	7.5624	7.7576	0	552	70	0.955063035883597	0.0464905228909541	0.955063035883597	386.557800023196	0	18.8168461928052						626	23	4	NaN	NaN	NaN	0.00043177	1	12703	109.88	81.781	1	201820			11438	973	9630	9882	11438	11438		
LETAIASHQQAMEELK	16	Unmodified	_LETAIASHQQAMEELK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.953826	1797.8931	2.7145	0.0024429	-0.81104	-0.0007299	1.9035	0.001713	900.454178299424	7.6511	0.071058	7.6511	7.6245	7.6956	0	258	25	1.15196821829984	0.0159677958301987	1.15196821829984	464.93739714684	0	6.44464431702966						143	9	3	NaN	NaN	NaN	2.4668E-12	1	27164	139.61	127.59	1	32425			11439	914	9631	9883	11439	11439		
LETHMTPEMFR	11	Unmodified	_LETHMTPEMFR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.553057	1390.63734	-1.5397	-0.00071528	-0.33013	-0.00015336	-1.8698	-0.00086864	464.553138623516	8.6534	0.25737	8.6534	8.5825	8.8399	0	789	43	0.794378096728713	0.0286363621656089	0.794378096728713	481.992631785756	0	17.3752469029689						626	30	4	NaN	NaN	NaN	0.0017984	1	15157	90.263	67.876	1	289810			11440	1575	9632	9884	11440	11440		
LETHMTPEMFR	11	Unmodified	_LETHMTPEMFR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.325947	1390.63734	1.6537	0.0011515	4.5544	0.0031714	6.2081	0.0043229	696.329983519369	8.6534	0.17744	8.6534	8.5648	8.7422	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	406.749905092257	0	8.1543671254305						365	21	3	NaN	NaN	NaN	0.00044932	1	15159	83.358	73.844	1	134830			11441	1575	9632	9884	11441	11441		
LETMPLYLEDDIRPDIK	17	Unmodified	_LETMPLYLEDDIRPDIK_			0	0	1	O00767	O00767	O00767	SCD	Acyl-CoA desaturase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.690608	2060.04999	0.78489	0.00053976	0.96259	0.00066196	1.7475	0.0012017	688.025759291129	14.95	0.12416	14.95	14.905	15.03	0	525	73	0.973257487423603	0.0484749534387644	0.973257487423603	588.637704129121	0	29.318228391436						737	15	4	NaN	NaN	NaN	0.0011763	1	32710	45.654	38.447	1	220650			11442	100	9633	9885	11442	11442		
LETSFLLYK	9	Unmodified	_LETSFLLYK_			0	0	0		REV__A8TX70	REV__A8TX70			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.313158	1112.61176	2.0553	0.0011454	-2.4289	-0.0013536	-0.37356	-0.00020819	557.311844828803	5.6381	0.28376	5.6381	5.5583	5.8421	0	600	46	0.922661313351899	0.0304124071077684	0.922661313351899	374.138766234833	0	12.3322180185442						659	33	4	NaN	NaN	NaN	0.021074	1	7062	46.835	4.0006	1	281030	+		11443	3482	9634	9886	11443	11443		
LETVDPTYIFHPR	13	Unmodified	_LETVDPTYIFHPR_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.943707	1586.80929	-0.2031	-0.00010763	-0.47073	-0.00024946	-0.67383	-0.00035709	530.278103568929	12.999	0.1596	12.999	12.91	13.07	0	681	28	0.867820189810857	0.018315911392907	0.867820189810857	525.913451314878	0	11.0997465692988						330	19	4	NaN	NaN	NaN	0.003528	1	21173	64.064	56.925	1	77884			11444	407	9635	9887	11444	11444		
LETVGSIFSR	10	Unmodified	_LETVGSIFSR_			0	0	0	Q9Y3D9	Q9Y3D9	Q9Y3D9	MRPS23	28S ribosomal protein S23, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.803488	1107.59242	0.11041	6.1256E-05	-4.6069	-0.0025559	-4.4965	-0.0024946	555.301273256141	11.571	0.21289	11.571	11.474	11.687	0	639	61	0.896281965493857	0.0406371291236521	0.896281965493857	363.462114206683	0	16.4792525513265						588	25	3	NaN	NaN	NaN	0.0043715	1	6929	72.042	42.731	1	190980			11445	3391	9636	9888	11445	11445		
LEVAPISDIIAIK	13	Unmodified	_LEVAPISDIIAIK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.418685	1380.82282	0.13435	9.2891E-05	-0.1427	-9.8663E-05	-0.0083487	-5.7725E-06	691.418773639168	17.034	0.266	17.034	16.954	17.22	0	510	88	0.983355730988811	0.0584970270791599	0.983355730988811	397.801131395122	0	23.6640544433922						1209	31	5	NaN	NaN	NaN	0.00034162	1	14864	86.243	55.324	1	1034700			11446	685	9637	9889	11446	11446		
LEVDAIVNAANSSLLGGGGVDGCIHR	26	Unmodified	_LEVDAIVNAANSSLLGGGGVDGCIHR_			0	0	0	Q9BQ69	Q9BQ69	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.437893	2593.29185	1.7237	0.0014917	0.22188	0.00019202	1.9456	0.0016838	865.438486490443	16.617	0.11526	16.617	16.573	16.688	0	312	67	1.11600111266355	0.0440264072478398	1.11600111266355	674.041537243433	0	26.5910373062379						494	14	4	NaN	NaN	NaN	1.6568E-05	1	37218	44.584	38.28	1	101640			11447	2693	9638	9890	11447	11447		
LEVDIPLVK	9	Unmodified	_LEVDIPLVK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.3157	1024.61685	0.24981	0.00012823	-0.94937	-0.00048732	-0.69956	-0.00035909	513.315156106242	13.948	0.11527	13.948	13.903	14.019	0	654	85	0.886123392477847	0.0569552025605835	0.886123392477847	359.699983041896	0	23.1195627709397						546	14	3	NaN	NaN	NaN	0.0066121	1	4867	65.156	39.902	1	165810			11448	1457	9639	9891	11448	11448		
LEVEANNAFDQYR	13	Unmodified	_LEVEANNAFDQYR_			0	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.870619	1567.72669	2.2431	0.0017606	-0.67854	-0.00053257	1.5646	0.001228	784.870844054504	9.8864	0.17732	9.8864	9.7889	9.9662	0	426	40	1.03977710643793	0.0261432202901304	1.03977710643793	420.128010395357	0	10.5633207904022						338	21	4	NaN	NaN	NaN	2.5637E-05	1	20581	110.44	90.257	1	107010			11449	1100	9640	9892	11449	11449		
LEVPDMNIR	9	Unmodified	_LEVPDMNIR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.784241	1085.55393	0.69465	0.00037774	0.53393	0.00029034	1.2286	0.00066808	543.783850487349	11.075	0.24829	11.075	11.012	11.261	0	654	73	0.886123392477847	0.0488187328232856	0.886123392477847	359.432209288163	0	19.8020108060297						386	29	3	NaN	NaN	NaN	0.0015069	1	6350	79.809	54.556	1	152070			11450	1584	9641	9893	11450	11450		
LEVQAEEERK	10	Unmodified	_LEVQAEEERK_			0	0	1	Q9H307	Q9H307	Q9H307	PNN	Pinin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.882337	1229.62518	-0.74413	-0.00030575	1.6583	0.00068135	0.91414	0.00037561	410.883119902799	2.8538	0.133	2.8538	2.836	2.969	0	870	22	0.739054571787983	0.0143691370425433	0.739054571787983	449.001536292965	0	8.72975400408853						152	16	3	NaN	NaN	NaN	0.040912	1	10295	28.096	8.8402	1	29525			11451	2877	9642	9894	11451	11451		
LEVQATDREENK	12	Unmodified	_LEVQATDREENK_			0	0	1	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.357345	1430.70014	2.4259	0.0017378	-1.6036	-0.0011487	0.82228	0.00058905	716.355994314161	2.8449	0.17732	2.8449	2.8183	2.9956	0	501	43	0.98941132619024	0.0282496839404589	0.98941132619024	400.112474631487	0	11.4240161293657						288	21	3	NaN	NaN	NaN	0.0082118	1	16413	90.306	71.799	1	58912			11452	651	9643	9895	11452	11452		
LEVQATDREENK	12	Unmodified	_LEVQATDREENK_			0	0	1	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.907322	1430.70014	-0.16487	-7.8792E-05	1.0694	0.00051109	0.90456	0.00043229	477.907976925302	2.8449	0.22167	2.8449	2.8183	3.04	0	822	28	0.771863999559055	0.0184360231604151	0.771863999559055	468.203140071611	0	11.1830632586446						346	26	4	NaN	NaN	NaN	0.00043702	1	16414	97.277	82.515	1	83667			11453	651	9643	9895	11453	11453		
LEWDGFFSTTVTNPEPMGK	19	Unmodified	_LEWDGFFSTTVTNPEPMGK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.50388	2154.99321	0.64049	0.00069077	2.4564	0.0026492	3.0968	0.00334	1079.00732664251	17.53	0.097573	17.53	17.486	17.583	0	126	34	1.23951419873743	0.0218249814515028	1.23951419873743	499.636138385595	0	8.7974381123455						245	12	4	NaN	NaN	NaN	0.027705	1	34105	18.396	17.921	1	40084			11454	849	9644	9896	11454	11454		
LEWLSLLSDAEK	12	Unmodified	_LEWLSLLSDAEK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.374475	1402.7344	0.77908	0.00054721	-0.11664	-8.1928E-05	0.66244	0.00046528	702.374240580793	18.594	0.10638	18.594	18.559	18.665	0	444	58	1.02770517576159	0.0382568380923556	1.02770517576159	415.677617911056	0	15.4738067902155						404	13	4	NaN	NaN	NaN	0.00015819	1	15552	108.93	83.072	1	141980			11455	2726	9645	9897	11455	11455		
LEYCEALAMLR	11	Unmodified	_LEYCEALAMLR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.836148	1367.65774	0.59679	0.0004087	0.059902	4.1023E-05	0.65669	0.00044972	684.836152212662	15.065	0.088673	15.065	15.012	15.101	0	534	55	0.967195187796614	0.0363763278490683	0.967195187796614	391.300970913938	0	14.7168767847689						335	11	4	NaN	NaN	NaN	2.5824E-05	1	14420	81.099	65.22	1	77637			11456	705	9646	9898	11456	11456		
LEYGDNAEK	9	Unmodified	_LEYGDNAEK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.740554	1037.46655	1.5305	0.00079544	0.50437	0.00026214	2.0348	0.0010576	519.74033023044	2.9868	0.32809	2.9868	2.9158	3.2439	0	708	31	0.849494101904619	0.0203778832072955	0.849494101904619	344.774600167123	0	8.2705418663831						232	38	2	NaN	NaN	NaN	0.051479	1	5171	34.781	14.122	1	72553			11457	3324	9647	9899	11457	11457		
LEYHQVIQQMEQK	13	Unmodified	_LEYHQVIQQMEQK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.615373	1672.82429	-0.95714	-0.00053467	0.13522	7.5536E-05	-0.82192	-0.00045914	558.615575526987	9.2479	0.07978	9.2479	9.2213	9.3011	0	741	52	0.827064408645228	0.0346833569079855	0.827064408645228	500.991996870543	0	21.0093483093636						310	10	3	NaN	NaN	NaN	0.00065549	1	23695	73.655	72.844	1	76303			11458	1467	9648	9900	11458	11458		
LEYHQVIQQMEQK	13	Unmodified	_LEYHQVIQQMEQK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.419422	1672.82429	2.0466	0.0017138	2.1228	0.0017777	4.1694	0.0034915	837.421981748198	9.2568	0.08869	9.2568	9.2036	9.2923	0	309	34	1.11800162319566	0.0220086485817799	1.11800162319566	451.486502436444	0	8.88782946766952						251	11	4	NaN	NaN	NaN	1.903E-06	1	23698	102.03	82.138	1	53171			11459	1467	9648	9900	11459	11459		
LFAAYNEGIINLLEK	15	Unmodified	_LFAAYNEGIINLLEK_			0	0	0	Q13492	Q13492	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.469438	1706.92432	1.6056	0.001372	2.322	0.0019841	3.9276	0.0033561	854.973141062836	18.381	0.079787	18.381	18.346	18.426	0	318	49	1.11199926528787	0.0320103814139743	1.11199926528787	448.988838158974	0	12.9247423165924						265	10	3	NaN	NaN	NaN	7.7991E-05	1	24690	81.48	71.23	1	63370			11460	1672	9649	9901	11460	11460		
LFADAVQELLPQYK	14	Unmodified	_LFADAVQELLPQYK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.943056	1633.87156	1.7626	0.0014417	0.8582	0.00070196	2.6208	0.0021437	818.445025166444	17.601	0.28373	17.601	17.459	17.743	0	354	55	1.08796502040166	0.0360811878816949	1.08796502040166	439.442764242333	0	14.5736458824985						1191	33	5	NaN	NaN	NaN	2.6529E-11	1	22601	147.72	122.11	1	623030			11461	952	9650	9902	11461	11461		
LFAELEIK	8	Unmodified	_LFAELEIK_			0	0	0	O75937	O75937	O75937	DNAJC8	DnaJ homolog subfamily C member 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.781493	961.548434	-0.72711	-0.00035031	-1.5359	-0.00073994	-2.263	-0.0010903	481.780647513789	12.414	0.14185	12.414	12.361	12.502	0	711	28	0.847456455381371	0.0183388204791043	0.847456455381371	344.303001879589	0	7.45066121308264						197	17	3	NaN	NaN	NaN	0.018365	1	3476	58.286	27.724	1	56393			11462	371	9651	9903	11462	11462		
LFALVLTPTR	10	Unmodified	_LFALVLTPTR_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.850242	1129.68593	0.10735	6.0742E-05	-1.2988	-0.0007349	-1.1914	-0.00067416	565.849450195776	15.003	0.15961	15.003	14.941	15.101	0	633	43	0.900343422309015	0.0284223196233265	0.900343422309015	365.021339504316	0	11.5231065431892						407	19	3	NaN	NaN	NaN	0.0067053	1	7533	69.716	60.323	1	134620			11463	2849	9652	9904	11463	11463		
LFAWADPTGTR	11	Unmodified	_LFAWADPTGTR_			0	0	0	Q709C8	Q709C8	Q709C8	VPS13C	Vacuolar protein sorting-associated protein 13C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.814387	1233.61422	1.9111	0.0011807	-3.6922	-0.0022811	-1.7811	-0.0011004	617.812359890127	8.2898	0.32821	8.2898	8.2188	8.547	0	576	43	0.938871150116794	0.0283515051757137	0.938871150116794	380.254564123462	0	11.4827143655377						646	38	5	NaN	NaN	NaN	0.033269	1	10428	39.324	4.3928	1	687670			11464	2101	9653	9905	11464	11464		
LFCVGFTK	8	Unmodified	_LFCVGFTK_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.254588	970.494624	0.26349	0.00012812	-0.89674	-0.00043604	-0.63325	-0.00030792	486.254480152298	10.888	0.3281	10.888	10.711	11.039	0	732	46	0.833184998970724	0.0305944526295086	0.833184998970724	338.460829224079	0	12.4282408101831						785	38	5	NaN	NaN	NaN	0.0025753	1	3639	85.813	59.59	1	714310			11465	1338	9654	9906	11465	11465		
LFDATLTQYVK	11	Unmodified	_LFDATLTQYVK_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.853178	1297.6918	1.3086	0.00085041	-1.1205	-0.00072813	0.18816	0.00012228	649.853063850642	13.602	0.13301	13.602	13.549	13.682	0	498	37	0.991429299781895	0.0242173613457122	0.991429299781895	401.321767318126	0	9.80297259439578						291	16	4	NaN	NaN	NaN	2.1955E-05	1	12296	83.358	65.962	1	75017			11466	1975	9655	9907	11466	11466		
LFDDCTQQFK	10	Unmodified	_LFDDCTQQFK_			0	0	0	Q13362	Q13362	Q13362	PPP2R5C	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.29517	1300.57579	1.5052	0.00098035	-6.2275	-0.0040559	-4.7222	-0.0030756	651.79131060746	8.5648	0.16847	8.5648	8.4584	8.6268	0	525	37	0.973257487423603	0.0242475250130607	0.973257487423603	393.956798466832	0	9.81495385170581						389	20	4	NaN	NaN	NaN	0.059751	1	12357	43.734	42.232	1	101350			11467	1656	9656	9908	11467	11467		
LFDFVNAK	8	Unmodified	_LFDFVNAK_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.258185	952.501818	-1.9113	-0.00091218	-0.20711	-9.8846E-05	-2.1184	-0.001011	477.258081342868	11.979	0.133	11.979	11.944	12.077	0	735	28	0.831145085810763	0.0183617725733707	0.831145085810763	337.721247949525	0	7.46098467513053						130	16	2	NaN	NaN	NaN	0.022403	1	3293	49.325	37.258	1	36672			11468	1579	9657	9909	11468	11468		
LFDHPESPTPNPTEPLFLAQAEVYK	25	Unmodified	_LFDHPESPTPNPTEPLFLAQAEVYK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.47623	2839.40686	1.9073	0.0018071	-0.51229	-0.00048538	1.395	0.0013217	947.810022246196	16.085	0.18623	16.085	16.014	16.2	0	381	106	1.06991323971056	0.0703565465382303	1.06991323971056	645.906718285619	0	42.4742534233068						1645	22	6	NaN	NaN	NaN	2.6557E-13	1	37981	97.551	91.986	1	614490			11469	1127	9658	9910	11469	11469		
LFDIFSQQVATVIQSR	16	Unmodified	_LFDIFSQQVATVIQSR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.003626	1850.98905	-0.36743	-0.00022707	0.70401	0.00043508	0.33658	0.00020801	618.338207378444	19.011	0.097552	19.011	18.967	19.064	0	621	25	0.908462957275599	0.0162368192859779	0.908462957275599	549.864049686901	0	9.82763593729419						218	12	4	NaN	NaN	NaN	0.00091222	1	28529	80.623	75.236	1	72229			11470	2605	9659	9911	11470	11470		
LFDIFSQQVATVIQSR	16	Unmodified	_LFDIFSQQVATVIQSR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.5018	1850.98905	1.3947	0.0012922	-0.22275	-0.00020638	1.1719	0.0010858	927.003012266591	19.002	0.133	19.002	18.967	19.1	0	246	43	1.1599488233373	0.0279282839901285	1.1599488233373	468.055585578371	0	11.269453491568						353	16	3	NaN	NaN	NaN	3.4599E-12	1	28530	174.02	157.26	1	252700			11471	2605	9659	9911	11471	11471		
LFDLLNK	7	Unmodified	_LFDLLNK_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.755278	861.496004	-2.1672	-0.00093568	-0.16465	-7.1087E-05	-2.3318	-0.0010068	431.755195989605	12.786	0.11527	12.786	12.751	12.866	0	798	25	0.788241307691771	0.0163681894120964	0.788241307691771	320.768895550006	0	6.66091206923215						160	14	2	NaN	NaN	NaN	0.012636	1	1745	76.833	22.777	1	42319			11472	2664	9660	9912	11472	11472		
LFDPINLVFPPGGR	14	Unmodified	_LFDPINLVFPPGGR_			0	0	0	Q9UP83	Q9UP83	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.427376	1540.8402	0.80777	0.00062313	0.086541	6.676E-05	0.89431	0.00068989	771.427416018518	19.587	0.079818	19.587	19.57	19.649	0	429	34	1.03776581230406	0.0221242386339204	1.03776581230406	419.379385860008	0	8.94079328968616						107	10	2	NaN	NaN	NaN	0.0025516	1	19751	57.293	51.265	1	25925			11473	3310	9661	9913	11473	11473		
LFDQAFGLPR	10	Unmodified	_LFDQAFGLPR_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.314023	1162.61349	0.95967	0.00055883	-0.066471	-3.8707E-05	0.8932	0.00052013	582.313889068506	13.983	0.44335	13.983	13.859	14.302	0	615	127	0.912521036363781	0.085208027536733	0.912521036363781	369.832085188764	0	34.5336285334346						4270	51	5	NaN	NaN	NaN	4.0241E-08	1	8417	175.51	137.19	1	8365500			11474	516	9662	9914	11474	11474		
LFDSDPITVTVPVEVSR	17	Unmodified	_LFDSDPITVTVPVEVSR_			0	0	0	P10909	P10909	P10909	CLU	Clusterin;Clusterin beta chain;Clusterin alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.498923	1872.98329	1.0209	0.00095708	-0.89468	-0.00083876	0.12621	0.00011832	937.999926437304	15.916	0.12415	15.916	15.881	16.005	0	240	109	1.16393748060522	0.0716875137392243	1.16393748060522	469.624040978343	0	28.9243885095953						610	15	4	NaN	NaN	NaN	0.00011482	1	29009	97.594	88.438	1	126700			11475	636	9663	9915	11475	11475		
LFDSICNNK	9	Unmodified	_LFDSICNNK_			0	0	0	P04899;P08754;P63096	P04899;P08754;P63096	P04899	GNAI2;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.766049	1109.51754	1.043	0.00057964	-6.4578	-0.003589	-5.4148	-0.0030094	555.765922921016	7.2432	0.21282	7.2432	7.1545	7.3674	0	636	46	0.898312834727904	0.0304714989453929	0.898312834727904	364.277916533952	0	12.3566019769232						541	25	5	NaN	NaN	NaN	0.0016636	1	6969	94.806	53.781	1	246360			11476	520;590;1425	9664	9916	11476	11476		
LFDSTIADEGTWTLEDRK	18	Unmodified	_LFDSTIADEGTWTLEDRK_			0	0	1	Q8WVJ2	Q8WVJ2	Q8WVJ2	NUDCD2	NudC domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.676015	2096.00621	0.36652	0.00025645	-0.14054	-9.8331E-05	0.22598	0.00015812	700.01061263824	13.407	0.062069	13.407	13.389	13.451	0	570	34	0.942920803299286	0.0222684693182358	0.942920803299286	570.224281399297	0	13.4666897478801						188	8	4	NaN	NaN	NaN	1.4848E-05	1	33252	59.77	55.921	1	33696			11477	2379	9665	9917	11477	11477		
LFDSTTLEHQK	11	Unmodified	_LFDSTTLEHQK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.226103	1317.65648	-1.8902	-0.0008321	0.77148	0.00033963	-1.1187	-0.00049247	440.226388714989	6.2589	0.19509	6.2589	6.2146	6.4096	0	816	34	0.775960037304758	0.0225266419611888	0.775960037304758	471.07364362692	0	13.6755848203153						392	23	4	NaN	NaN	NaN	0.00040803	1	12906	88.181	78.667	1	138000			11478	1655	9666	9918	11478	11478		
LFDSTTLEHQK	11	Unmodified	_LFDSTTLEHQK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.835517	1317.65648	1.9249	0.0012701	0.72669	0.0004795	2.6516	0.0017496	659.835842874863	6.2589	0.47884	6.2589	6.0638	6.5427	0	456	58	1.01965166402748	0.0382779809350662	1.01965166402748	412.680043023799	0	15.4921130190217						820	55	5	NaN	NaN	NaN	3.606E-09	1	12909	166.61	124.54	1	566270			11479	1655	9666	9918	11479	11479		
LFDTLNEDLFQK	12	Unmodified	_LFDTLNEDLFQK_			0	0	0	P48723	P48723	P48723	HSPA13	Heat shock 70 kDa protein 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.877382	1481.74021	1.3967	0.0010362	-0.85587	-0.00063495	0.5408	0.00040121	741.877747979969	15.562	0.13301	15.562	15.526	15.659	0	420	28	1.04379886199097	0.0180966528124649	1.04379886199097	421.967236003738	0	7.31577207665237						276	16	4	NaN	NaN	NaN	0.00067216	1	17966	72.922	64.921	1	58754			11480	1115	9667	9919	11480	11480		
LFDWANTSR	9	Unmodified	_LFDWANTSR_			0	0	0	Q5T9A4;Q9NVI7;Q5T2N8	Q5T9A4;Q9NVI7	Q9NVI7	ATAD3B;ATAD3A;ATAD3C	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A;ATPase family AAA domain-containing protein 3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.272355	1108.53016	0.86287	0.00047913	3.8314	0.0021275	4.6943	0.0026066	555.776564377554	10.95	0.39017	10.95	10.817	11.208	0	648	67	0.890187667287968	0.0446760507489944	0.890187667287968	360.98695130164	0	18.1169341575025						788	45	3	NaN	NaN	NaN	0.072315	1	6943	31.952	8.377	1	290200			11481	3068;1996	9668	9920	11481	11481		
LFEAEAQDLFR	11	Unmodified	_LFEAEAQDLFR_			0	0	0	Q9H223	Q9H223	Q9H223	EHD4	EH domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.838059	1337.66157	1.1019	0.00073808	-0.00012319	-8.2519E-08	1.1018	0.000738	669.838456943633	14.542	0.079775	14.542	14.506	14.586	0	462	28	1.01562323939346	0.0181316691243478	1.01562323939346	410.985836611285	0	7.33722793570519						162	10	3	NaN	NaN	NaN	0.0074457	1	13525	51.872	29.486	1	37639			11482	2860	9669	9921	11482	11482		
LFEAEEQDLFK	11	Unmodified	_LFEAEEQDLFK_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.837725	1367.6609	1.3209	0.00090463	1.0228	0.00070047	2.3438	0.0016051	684.838460077411	13.744	0.13299	13.744	13.7	13.832	0	435	37	1.03374239103424	0.0241471979634897	1.03374239103424	418.224152840513	0	9.76930180994981						387	16	4	NaN	NaN	NaN	2.2617E-07	1	14422	117.3	97.117	1	170410			11483	2897	9670	9922	11483	11483		
LFEASIETGDR	11	Unmodified	_LFEASIETGDR_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.306592	1236.59863	1.3181	0.00081631	-0.2916	-0.00018059	1.0265	0.00063572	619.306227497415	8.5116	0.15075	8.5116	8.4406	8.5914	0	579	37	0.936845902828289	0.0242979231728671	0.936845902828289	379.424165419359	0	9.84069972815854						283	18	3	NaN	NaN	NaN	0.00023982	1	10514	92.732	76.274	1	78645			11484	880	9671	9923	11484	11484		
LFECDRDQMYYNLLK	15	Unmodified	_LFECDRDQMYYNLLK_			0	0	1	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.981616	2006.92302	0.67013	0.00044897	-1.9506	-0.0013068	-1.2804	-0.00085787	670.314818437706	13.584	0.12415	13.584	13.54	13.664	0	654	64	0.886123392477847	0.0426601096058868	0.886123392477847	536.032857015882	0	25.805909906871						747	15	5	NaN	NaN	NaN	0.0010894	1	31748	39.702	39.026	1	250040			11485	1055	9672	9924	11485	11485		
LFEDMGLFEAFK	12	Unmodified	_LFEDMGLFEAFK_			0	0	0	Q14432	Q14432	Q14432	PDE3A	cGMP-inhibited 3,5-cyclic phosphodiesterase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.852321	1445.69009	-0.095031	-6.8788E-05	0.52464	0.00037976	0.4296	0.00031097	723.852736917379	19.286	0.0532	19.286	19.259	19.312	0	471	28	1.00957851518677	0.0181391858417761	1.00957851518677	408.227428957267	0	7.33465806589231						125	7	3	NaN	NaN	NaN	0.0056587	1	16850	48.785	35.512	1	26610			11486	1751	9673	9925	11486	11486		
LFEEPEDPSNR	11	Unmodified	_LFEEPEDPSNR_			0	0	0	P63151;Q9Y2T4	P63151	P63151	PPP2R2A;PPP2R2C	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B gamma isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.806956	1331.59936	1.3784	0.00091915	1.6685	0.0011126	3.0469	0.0020317	666.807985465935	6.5781	0.23944	6.5781	6.5338	6.7732	0	555	40	0.953040030838688	0.0263099961420051	0.953040030838688	385.678631863771	0	10.6471952783137						454	28	4	NaN	NaN	NaN	0.060677	1	13334	29.755	26.41	1	201140			11487	1428	9674	9926	11487	11487		
LFEETGHEDPITK	13	Unmodified	_LFEETGHEDPITK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.915706	1514.72529	-1.524	-0.000771	0.78519	0.00039724	-0.73877	-0.00037376	505.916112570132	6.6668	0.15963	6.6668	6.6136	6.7732	0	795	49	0.790287188799094	0.0327181642155757	0.790287188799094	479.124047127603	0	19.8359020312264						320	19	3	NaN	NaN	NaN	0.017221	1	18959	38.1	26.142	1	97475			11488	1942	9675	9927	11488	11488		
LFEETGHEDPITK	13	Unmodified	_LFEETGHEDPITK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.369921	1514.72529	2.1569	0.0016357	-0.37398	-0.00028362	1.7829	0.0013521	758.369209793828	6.658	0.17735	6.658	6.5959	6.7732	0	381	34	1.06991323971056	0.0220785024437311	1.06991323971056	432.43710129056	0	8.92368020437482						405	21	4	NaN	NaN	NaN	1.6476E-05	1	18960	117.45	90.868	1	131540			11489	1942	9675	9927	11489	11489		
LFEFMHETHDGVQDMACDTFIK	22	Unmodified	_LFEFMHETHDGVQDMACDTFIK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	668.546096	2670.15528	0.38863	0.00025982	0.046569	3.1133E-05	0.4352	0.00029095	668.797421766918	14.985	0.070954	14.985	14.959	15.03	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	754.330076293265	0	13.0464218954044						254	9	6	NaN	NaN	NaN	0.0068409	1	37510	39.483	37.42	1	81665			11490	135	9676	9928	11490	11490		
LFEGNALLR	9	Unmodified	_LFEGNALLR_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.795466	1031.57638	1.3203	0.00068235	-0.18224	-9.4182E-05	1.1381	0.00058817	516.795371281097	11.012	0.36356	11.012	10.95	11.314	0	648	61	0.890187667287968	0.0406427674647416	0.890187667287968	361.317456390656	0	16.4964556358956						1179	42	4	NaN	NaN	NaN	7.805E-06	1	5042	152.31	94.028	1	1099300			11491	1089	9677	9929	11491	11491		
LFEHYYQELK	10	Unmodified	_LFEHYYQELK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.231077	1368.6714	-1.2059	-0.00055136	-0.40382	-0.00018464	-1.6097	-0.000736	457.231026061549	9.6381	0.15962	9.6381	9.576	9.7356	0	771	58	0.806643990516186	0.0388501213535521	0.806643990516186	489.512233583088	0	23.5762119377864						436	19	4	NaN	NaN	NaN	0.0006056	1	14452	98.009	88.495	1	211780			11492	1581	9678	9930	11492	11492		
LFEHYYQELK	10	Unmodified	_LFEHYYQELK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.342978	1368.6714	1.9695	0.0013498	1.5055	0.0010318	3.475	0.0023816	685.343930957404	9.6381	0.16846	9.6381	9.5938	9.7622	0	435	40	1.03374239103424	0.0261576594975734	1.03374239103424	418.221060977757	0	10.5826018190327						491	20	5	NaN	NaN	NaN	1.1126E-07	1	14454	146.88	95.02	1	242820			11493	1581	9678	9930	11493	11493		
LFEILNDK	8	Unmodified	_LFEILNDK_			0	0	0	Q5T1V6	Q5T1V6	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.276575	990.538597	-0.90047	-0.00044688	-1.5041	-0.00074647	-2.4046	-0.0011934	496.275917756174	12.192	0.097561	12.192	12.157	12.254	0	708	19	0.849494101904619	0.0122250304195799	0.849494101904619	344.988429742373	0	4.96471257251545						95	12	2	NaN	NaN	NaN	0.071591	1	4069	31.952	7.1015	1	23389			11494	1989	9679	9931	11494	11494		
LFEISDIVIK	10	Unmodified	_LFEISDIVIK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.847364	1175.68018	0.28811	0.00016965	-2.6809	-0.0015786	-2.3928	-0.001409	588.845817320605	16.475	0.21281	16.475	16.386	16.599	0	609	40	0.916577990479294	0.0263647247275708	0.916577990479294	371.427915455945	0	10.6838641652423						424	25	4	NaN	NaN	NaN	0.0069463	1	8771	60.892	43.496	1	277650			11495	3036	9680	9932	11495	11495		
LFELDPLTGEWHYK	14	Unmodified	_LFELDPLTGEWHYK_			0	0	0	Q9BZF1	Q9BZF1	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.294517	1746.86172	-0.77429	-0.00045164	0.80918	0.00047199	0.034888	2.035E-05	583.296200951481	15.89	0.097532	15.89	15.845	15.943	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	543.961237800923	0	9.83744259420416						178	12	4	NaN	NaN	NaN	0.0037492	1	25802	57.293	51.265	1	47669			11496	2809	9681	9933	11496	11496		
LFELLEK	7	Unmodified	_LFELLEK_			0	0	0	O60264;P28370	O60264	O60264	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.262936	890.51132	-0.76443	-0.00034114	-0.74195	-0.0003311	-1.5064	-0.00067224	446.261970966329	12.83	0.18623	12.83	12.742	12.928	0	771	40	0.806643990516186	0.0265594729545963	0.806643990516186	328.090031500465	0	10.8026569598977						410	22	3	NaN	NaN	NaN	0.024943	1	2175	70.67	0	1	143230			11497	251	9682	9934	11497	11497		
LFENQLVGPESIAHIGDVMFTGTADGR	27	Unmodified	_LFENQLVGPESIAHIGDVMFTGTADGR_			0	0	0	Q9HDC9	Q9HDC9	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	958.807874	2873.40179	0.61964	0.00059411	0.26676	0.00025577	0.8864	0.00084989	959.14206463733	19.091	0.12414	19.091	19.029	19.153	0	399	37	1.0578662689527	0.02411056734266	1.0578662689527	638.597127598632	0	14.554712161339						392	15	4	NaN	NaN	NaN	0.00067391	1	38039	21.668	21.068	1	68279			11498	2973	9683	9935	11498	11498		
LFFAGEHTIR	10	Unmodified	_LFFAGEHTIR_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.819473	1189.62439	1.2724	0.0007581	1.5638	0.00093175	2.8362	0.0016898	595.820087896408	8.2898	0.097591	8.2898	8.2632	8.3608	0	519	31	0.97729762293174	0.0201978857694813	0.97729762293174	395.979672556254	0	8.18374260374776						171	12	3	NaN	NaN	NaN	0.0044552	1	9152	65.404	52.577	1	42204			11499	257	9684	9936	11499	11499		
LFFILLTPVNHSTADK	16	Unmodified	_LFFILLTPVNHSTADK_			0	0	0	Q96RL7	Q96RL7	Q96RL7	VPS13A	Vacuolar protein sorting-associated protein 13A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.004967	1814.99307	-1.4093	-0.00085407	-8.7667	-0.0053126	-10.176	-0.0061667	606.333854733958	16.679	0.088702	16.679	16.644	16.732	0	678	31	0.869855008346864	0.0203439508833163	0.869855008346864	526.573486998971	0	12.3153687145202						203	11	3	NaN	NaN	NaN	0.0021032	1	27610	63.212	22.351	1	42647			11500	2610	9685	9937	11500	11500		
LFFLQVK	7	Unmodified	_LFFLQVK_			0	0	0	P35241;P15311;P26038	P35241;P15311;P26038	P15311	RDX;EZR;MSN	Radixin;Ezrin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.776014	893.537475	-0.41341	-0.00018511	-1.7845	-0.00079905	-2.1979	-0.00098416	447.775220516074	14.418	0.26603	14.418	14.356	14.622	0	744	58	0.82502364452135	0.0387907136666801	0.82502364452135	335.548424543592	0	15.7767149392762						900	31	4	NaN	NaN	NaN	0.0078184	1	2240	97.926	46.469	1	1011900			11501	710;846;962	9686	9938	11501	11501		
LFFWMQEPK	9	Unmodified	_LFFWMQEPK_			0	0	0	Q16186	Q16186	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.307352	1224.60015	0.23839	0.0001462	0.24121	0.00014793	0.47959	0.00029414	613.307555833108	16.058	0.12415	16.058	16.023	16.147	0	549	19	0.957085760909907	0.0121355107414761	0.957085760909907	387.663266253918	0	4.91543383450568						151	15	3	NaN	NaN	NaN	0.050117	1	10134	24.121	11.525	1	31880			11502	1878	9687	9939	11502	11502		
LFFWNSK	7	Unmodified	_LFFWNSK_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.247621	940.480688	-1.1063	-0.00052135	-0.11383	-5.3643E-05	-1.2201	-0.00057499	471.247581737024	13.832	0.1064	13.832	13.788	13.895	0	756	28	0.816857749704129	0.0183822106275564	0.816857749704129	331.97618420878	0	7.47064729895578						163	13	2	NaN	NaN	NaN	0.01605	1	3070	66.087	28.479	1	34780			11503	793	9688	9940	11503	11503		
LFGAAEVQR	9	Unmodified	_LFGAAEVQR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.771991	989.529429	0.48207	0.000239	-1.7606	-0.00087284	-1.2785	-0.00063384	495.771312578576	6.8175	0.25713	6.8175	6.7023	6.9594	0	702	49	0.853568545818287	0.032586506939132	0.853568545818287	346.647947217776	0	13.2339058096603						588	30	4	NaN	NaN	NaN	0.050117	1	4046	37.722	20.327	1	235030			11504	1703	9689	9941	11504	11504		
LFGALTPLEPR	11	Unmodified	_LFGALTPLEPR_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.350606	1212.68666	0.63732	0.00038708	0.62654	0.00038053	1.2639	0.0007676	607.351339829006	14.045	0.24827	14.045	13.912	14.161	0	525	28	0.973257487423603	0.0181818689972096	0.973257487423603	394.256711011713	0	7.36529023769606						359	29	3	NaN	NaN	NaN	4.5545E-05	1	9814	79.059	65.064	1	97315			11505	108	9690	9942	11505	11505		
LFGDEAAEQWR	11	Unmodified	_LFGDEAAEQWR_			0	0	0	Q2T9J0	Q2T9J0	Q2T9J0	TYSND1	Peroxisomal leader peptide-processing protease;Peroxisomal leader peptide-processing protease, 15 kDa form;Peroxisomal leader peptide-processing protease, 45 kDa form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.312209	1320.60986	0.8703	0.00057554	0.49617	0.00032812	1.3665	0.00090366	661.312402358352	10.738	0.13302	10.738	10.693	10.826	0	555	25	0.953040030838688	0.016187402676465	0.953040030838688	385.711599427642	0	6.55131870108761						156	16	3	NaN	NaN	NaN	0.0040343	1	12995	46.033	37.056	1	34573			11506	1924	9691	9943	11506	11506		
LFGNILDK	8	Unmodified	_LFGNILDK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.26601	918.517468	-1.8126	-0.00083426	-0.79252	-0.00036477	-2.6051	-0.001199	460.265545383296	11.793	0.14189	11.793	11.74	11.882	0	756	28	0.816857749704129	0.0183770979161022	0.816857749704129	332.09048215105	0	7.47114085617227						236	17	3	NaN	NaN	NaN	0.0022568	1	2676	84.368	32.912	1	74698			11507	849	9692	9944	11507	11507		
LFGNMEGDCPSDWK	14	Oxidation (M)	_LFGNM(Oxidation (M))EGDCPSDWK_	LFGNM(1)EGDCPSDWK	LFGNM(110)EGDCPSDWK	0	1	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.342523	1670.67049	2.9641	0.002479	-0.9366	-0.00078332	2.0275	0.0016957	836.341976266219	9.7977	0.088675	9.7977	9.7622	9.8509	0	414	49	1.04781950764076	0.0321474274065014	1.04781950764076	423.149105740686	0	12.9823457758991						361	11	4	NaN	NaN	NaN	2.6946E-05	1	23632	108.24	101.5	1	84906			11508	495	9693	9945	11508	11508	82	
LFGPYVWGR	9	Unmodified	_LFGPYVWGR_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.792727	1093.5709	0.5097	0.00027921	-1.8651	-0.0010217	-1.3554	-0.0007425	547.791413944324	13.815	0.20394	13.815	13.744	13.948	0	642	49	0.894250814548268	0.0325006791403109	0.894250814548268	362.695563801811	0	13.1818187391771						519	24	3	NaN	NaN	NaN	0.0060749	1	6546	66.087	27.765	1	210850			11509	2892	9694	9946	11509	11509		
LFGYEMAEFK	10	Unmodified	_LFGYEMAEFK_			0	0	0	Q9UKD2	Q9UKD2	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.794275	1233.574	-0.18122	-0.00011196	8.9907	0.0055544	8.8095	0.0054425	617.799869984098	17.264	0.19509	17.264	17.184	17.38	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	385.173767166234	0	8.19512795976198						410	23	4	NaN	NaN	NaN	0.026889	1	10424	53.878	27.422	1	106430			11510	3260	9695	9947	11510	11510		
LFGYEPTIYYPK	12	Unmodified	_LFGYEPTIYYPK_			0	0	0	Q8NCW5	Q8NCW5	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.881936	1489.74932	1.7173	0.0012809	0.55246	0.00041207	2.2697	0.001693	745.88235020709	14.32	0.2128	14.32	14.214	14.427	0	417	94	1.04580932352505	0.0622899894930677	1.04580932352505	422.758950812668	0	25.1801643108899						1489	25	5	NaN	NaN	NaN	0.00053106	1	18218	81.099	73.098	1	456440			11511	2302	9696	9948	11511	11511		
LFHEDGECWVYDEPLLK	17	Unmodified	_LFHEDGECWVYDEPLLK_			0	0	0	Q96SU4	Q96SU4	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.334824	2148.98264	0.24015	0.00017227	-0.33007	-0.00023677	-0.089914	-6.4499E-05	717.668371677772	14.56	0.062067	14.56	14.533	14.595	0	630	31	0.902373728295776	0.0203016545312636	0.902373728295776	545.615273572778	0	12.2752828941234						188	8	4	NaN	NaN	NaN	0.022916	1	34001	23.149	22.674	1	34930			11512	2625	9697	9949	11512	11512		
LFHEVVQAFR	10	Unmodified	_LFHEVVQAFR_			0	0	0	Q9Y3T9	Q9Y3T9	Q9Y3T9	NOC2L	Nucleolar complex protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.89614	1244.66659	-1.8183	-0.00075622	-0.65559	-0.00027266	-2.4739	-0.0010289	415.895803009912	10.143	0.1064	10.143	10.099	10.206	0	798	31	0.788241307691771	0.0204630863651483	0.788241307691771	478.820065789154	0	12.4303766676497						239	13	4	NaN	NaN	NaN	0.00025989	1	10772	110.22	100.13	1	81013			11513	3399	9698	9950	11513	11513		
LFHSLMVLEK	10	Unmodified	_LFHSLMVLEK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	406.230132	1215.66857	-2.1621	-0.00087831	0.035894	1.4581E-05	-2.1262	-0.00086373	406.230336751419	11.243	0.088681	11.243	11.208	11.296	0	816	22	0.775960037304758	0.0143351345420983	0.775960037304758	471.482887771012	0	8.71020452802003						141	11	3	NaN	NaN	NaN	0.052767	1	9909	16.652	6.5641	1	33540			11514	1901	9699	9951	11514	11514		
LFHTAPNVPHYAK	13	Unmodified	_LFHTAPNVPHYAK_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.896243	1493.77793	2.0386	0.0015247	-2.011	-0.001504	0.027571	2.062E-05	747.89449437258	5.5494	0.05318	5.5494	5.5317	5.5849	0	363	16	1.08195024817156	0.0100273841613836	1.08195024817156	437.357746125505	0	4.05337874247795						60	7	2	NaN	NaN	NaN	0.00039516	1	18354	48.785	37.998	1	11955			11515	1236	9700	9952	11515	11515		
LFHVLDCTWNR	11	Unmodified	_LFHVLDCTWNR_			0	0	0	Q8NBI6	Q8NBI6	Q8NBI6	XXYLT1	Xyloside xylosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.574961	1459.70305	-2.1884	-0.001067	-0.10434	-5.0872E-05	-2.2927	-0.0011179	487.574751439187	11.651	0.07973	11.651	11.616	11.695	0	807	31	0.782101955086014	0.0204630863651483	0.782101955086014	474.32321684226	0	12.4102962383857						107	10	3	NaN	NaN	NaN	0.0048575	1	17249	51.864	34.133	1	19741			11516	2287	9701	9953	11516	11516		
LFIFETFCR	9	Unmodified	_LFIFETFCR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.810259	1231.60597	-0.39231	-0.00024198	-0.95081	-0.00058647	-1.3431	-0.00082845	616.809693934608	16.759	0.20393	16.759	16.706	16.91	0	585	37	0.932794566565362	0.0243147574808095	0.932794566565362	377.800277376482	0	9.84795843570987						514	24	4	NaN	NaN	NaN	3.6594E-06	1	10355	113.14	82.574	1	139570			11517	1304	9702	9954	11517	11517		
LFIGGLNTETNEK	13	Unmodified	_LFIGGLNTETNEK_			0	0	0	P38159;Q96E39	P38159	P38159	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.375006	1434.73546	2.2024	0.0015821	0.36482	0.00026208	2.5672	0.0018442	718.375655987161	10.667	0.23053	10.667	10.596	10.826	0	447	67	1.02569221487577	0.0442821075233106	1.02569221487577	414.773086779725	0	17.9069570385495						1024	27	5	NaN	NaN	NaN	1.9786E-11	1	16539	179.31	135.58	1	967560			11518	1004	9703	9955	11518	11518		
LFIGGLNVQTSESGLR	16	Unmodified	_LFIGGLNVQTSESGLR_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.959768	1689.90498	2.4581	0.0020795	0.37107	0.00031391	2.8292	0.0023934	845.95960364991	14.285	0.15959	14.285	14.232	14.391	0	327	43	1.10599442759226	0.0280360922618905	1.10599442759226	446.600511028468	0	11.320973070958						590	19	5	NaN	NaN	NaN	5.049E-08	1	24214	124.46	108.84	1	261890			11519	1635	9704	9956	11519	11519		
LFIGGLPNYLNDDQVK	16	Unmodified	_LFIGGLPNYLNDDQVK_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.475251	1804.93595	1.8218	0.001646	0.88966	0.00080378	2.7115	0.0024498	903.476006086596	16.182	0.78033	16.182	15.677	16.457	0	231	94	1.16991841121525	0.0618540097086082	1.16991841121525	472.168033472199	0	24.9636947726522						2394	89	6	NaN	NaN	NaN	5.5036E-08	1	27358	99.589	76.691	1	1403100			11520	850	9705	9957	11520	11520		
LFIGGLSFETTDDSLR	16	Unmodified	_LFIGGLSFETTDDSLR_			0	0	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.949066	1769.88358	1.4286	0.0012656	2.3725	0.0021019	3.801	0.0033675	886.452546709044	16.98	0.28377	16.98	16.918	17.202	0	288	76	1.13199748998575	0.0499508950067746	1.13199748998575	456.932484854719	0	20.1627536969627						1424	33	6	NaN	NaN	NaN	6.1898E-44	1	26406	208.63	190.89	1	676590			11521	1204	9706	9958	11521	11521		
LFIGGLSFETTDESLR	16	Unmodified	_LFIGGLSFETTDESLR_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.956891	1783.89923	1.6727	0.0014937	1.3308	0.0011883	3.0035	0.002682	892.958137783008	16.839	0.57638	16.839	16.759	17.335	0	285	196	1.13399579921816	0.129551865236669	1.13399579921816	457.711153528376	0	52.2906114115338						3040	66	6	NaN	NaN	NaN	3.0155E-44	1	26806	224.49	205.68	1	4717600			11522	608	9707	9959	11522	11522		
LFIGGLSFETTEESLR	16	Unmodified	_LFIGGLSFETTEESLR_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.964716	1797.91488	1.4309	0.0012878	2.2111	0.0019899	3.642	0.0032777	899.966823343836	17.016	0.72713	17.016	16.874	17.601	0	273	199	1.14198628764525	0.131535954179856	1.14198628764525	460.908610317189	0	53.0882502738212						3372	83	5	NaN	NaN	NaN	1.8036E-17	1	27172	172.51	146.9	1	4900700			11523	808	9708	9960	11523	11523		
LFIHESIHDEVVNR	14	Unmodified	_LFIHESIHDEVVNR_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.965283	1706.87402	0.88699	0.00050555	0.95722	0.00054558	1.8442	0.0010511	569.965958859596	7.7753	0.07983	7.7753	7.7487	7.8285	0	669	28	0.875957769340875	0.0183057433537801	0.875957769340875	530.522145217363	0	11.0868383999306						129	10	3	NaN	NaN	NaN	0.018168	1	24682	22.956	18.973	1	28167			11524	1132	9709	9961	11524	11524		
LFILDEADK	9	Unmodified	_LFILDEADK_			0	0	0	Q9UHI6	Q9UHI6	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.28714	1062.55973	-0.24581	-0.00013084	-2.1598	-0.0011496	-2.4056	-0.0012805	532.286580502208	12.476	0.16848	12.476	12.405	12.573	0	675	31	0.871889544407995	0.0203467753386566	0.871889544407995	353.754538766452	0	8.25536235808204						272	20	3	NaN	NaN	NaN	0.0017759	1	5794	49.96	26.385	1	70997			11525	3218	9710	9962	11525	11525		
LFISGLPFSCTK	12	Unmodified	_LFISGLPFSCTK_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.362856	1368.71116	0.89909	0.00061621	1.3391	0.00091778	2.2382	0.001534	686.368525389056	15.783	0.17733	15.783	15.695	15.872	0	495	58	0.993446994398923	0.0383203192355812	0.993446994398923	401.918640121139	0	15.5032434372519						528	21	4	NaN	NaN	NaN	0.0010576	1	14458	74.849	62.253	1	165770			11526	1793	9711	9963	11526	11526		
LFIVESNSSSSTR	13	Unmodified	_LFIVESNSSSSTR_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.862263	1425.70997	2.1993	0.00157	3.186	0.0022743	5.3853	0.0038444	713.865291920493	8.0148	0.2307	8.0148	7.9172	8.1479	0	447	49	1.02569221487577	0.0322051603576423	1.02569221487577	414.798147684943	0	13.0240248180732						510	27	4	NaN	NaN	NaN	2.4375E-05	1	16253	122.51	90.556	1	126190			11527	1109	9712	9964	11527	11527		
LFIYNPTTGEFLGR	14	Unmodified	_LFIYNPTTGEFLGR_			0	0	0	P54709	P54709	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.427573	1626.84059	2.0299	0.0016532	0.58267	0.00047455	2.6126	0.0021278	814.426581746014	16.041	0.19509	16.041	15.978	16.174	0	360	58	1.08395544855938	0.0380988236514024	1.08395544855938	437.839157327479	0	15.3891535531909						796	23	4	NaN	NaN	NaN	1.0887E-07	1	22386	136.94	103.22	1	521820			11528	1254	9713	9965	11528	11528		
LFLAGYDPTPTMR	13	Unmodified	_LFLAGYDPTPTMR_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.376494	1480.73844	1.4319	0.0010616	0.079844	5.9194E-05	1.5118	0.0011208	741.377327260579	13.434	0.17734	13.434	13.363	13.54	0	420	58	1.04379886199097	0.0382198802455282	1.04379886199097	421.969873713883	0	15.4509059435101						897	21	4	NaN	NaN	NaN	3.1774E-07	1	17927	129.28	95.557	1	363530			11529	334	9714	9966	11529	11529		
LFLAGYELTPTMR	13	Unmodified	_LFLAGYELTPTMR_			0	0	0	Q4G0F5	Q4G0F5	Q4G0F5	VPS26B	Vacuolar protein sorting-associated protein 26B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.39997	1510.78539	1.5858	0.0011995	0.60393	0.00045681	2.1897	0.0016563	756.399839282082	15.801	0.11528	15.801	15.766	15.881	0	318	31	1.11199926528787	0.0200147497946634	1.11199926528787	449.458023523153	0	8.08974444932852						258	14	4	NaN	NaN	NaN	0.0003289	1	18838	83.438	70.842	1	73056			11530	1939	9715	9967	11530	11530		
LFLDFLNVR	9	Unmodified	_LFLDFLNVR_			0	0	0	Q9Y343	Q9Y343	Q9Y343	SNX24	Sorting nexin-24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.826766	1135.63898	-0.89276	-0.00050783	-0.9597	-0.0005459	-1.8525	-0.0010537	568.82597561993	18.807	0.053227	18.807	18.781	18.834	0	624	19	0.906433495720521	0.0121776140547661	0.906433495720521	367.467177347856	0	4.93679181612697						55	7	2	NaN	NaN	NaN	0.0036875	1	7695	49.325	29.838	1	10170			11531	3369	9716	9968	11531	11531		
LFLDSYFK	8	Unmodified	_LFLDSYFK_			0	0	0	Q14146	Q14146	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.773668	1031.53278	-0.23755	-0.00012276	0.1058	5.4674E-05	-0.13175	-6.8086E-05	516.773129806821	15.154	0.10643	15.154	15.101	15.207	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	355.541892674457	0	6.60407973441227						154	13	3	NaN	NaN	NaN	0.050075	1	5038	34.931	13.003	1	36670			11532	1726	9717	9969	11532	11532		
LFLEFER	7	Unmodified	_LFLEFER_			0	0	0	O43663	O43663	O43663	PRC1	Protein regulator of cytokinesis 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.258185	952.501818	-0.98317	-0.00046923	-1.1229	-0.0005359	-2.106	-0.0010051	477.257559835803	12.236	0.15078	12.236	12.183	12.334	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	342.692822651457	0	6.62599759037624						204	18	3	NaN	NaN	NaN	0.060813	1	3294	42.229	0	1	51243			11533	215	9718	9970	11533	11533		
LFLEFER	7	Unmodified	_LFLEFER_			0	0	0	O43663	O43663	O43663	PRC1	Protein regulator of cytokinesis 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.258185	952.501818	-0.3276	-0.00015635	-1.6739	-0.0007989	-2.0015	-0.00095525	477.257326309882	12.972	0.088663	12.972	12.928	13.017	0	708	34	0.849494101904619	0.0224172293536435	0.849494101904619	345.177056470511	0	9.10884869614296						136	11	2	NaN	NaN	NaN	0.014501	1	3295	51.456	0	1	29547			11534	215	9718	9970	11534	11534		
LFLELEPQVR	10	Unmodified	_LFLELEPQVR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.355888	1242.69722	1.0839	0.00067458	-2.9595	-0.0018418	-1.8755	-0.0011673	622.354164737228	14.249	0.15073	14.249	14.196	14.347	0	561	46	0.948993180460448	0.0303534869943584	0.948993180460448	384.323019812733	0	12.292547537442						390	18	3	NaN	NaN	NaN	0.0010643	1	10717	74.486	20.969	1	123170			11535	1626	9719	9971	11535	11535		
LFLFHTSLPIAEAPGK	16	Unmodified	_LFLFHTSLPIAEAPGK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.994291	1739.96104	-1.2545	-0.00072886	-0.60913	-0.0003539	-1.8636	-0.0010828	581.328300762974	15.296	0.097471	15.296	15.26	15.358	0	726	49	0.837263974740672	0.0326227467021474	0.837263974740672	507.009741923875	0	19.7548812385325						410	12	4	NaN	NaN	NaN	1.8781E-06	1	25605	112.7	108.97	1	126780			11536	1247	9720	9972	11536	11536		
LFLFHTSLPIAEAPGK	16	Unmodified	_LFLFHTSLPIAEAPGK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.994291	1739.96104	-0.071392	-4.1479E-05	0.12663	7.357E-05	0.055236	3.2092E-05	581.328319149028	15.304	0.0798	15.304	15.269	15.349	0	600	46	0.922661313351899	0.0304166222504839	0.922661313351899	558.722560335183	0	18.4189505017828						291	10	4	NaN	NaN	NaN	0.00014469	1	25606	62.454	56.426	1	76692			11537	1247	9720	9972	11537	11537		
LFLFHTSLPIAEAPGK	16	Unmodified	_LFLFHTSLPIAEAPGK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.987798	1739.96104	1.5419	0.001343	3.8765	0.0033764	5.4184	0.0047194	870.992442511195	15.296	0.070939	15.296	15.269	15.34	0	261	58	1.14997238118939	0.037931351551258	1.14997238118939	464.250115865734	0	15.3130932887295						337	9	4	NaN	NaN	NaN	3.7571E-06	1	25607	84.999	77.423	1	74708			11538	1247	9720	9972	11538	11538		
LFLIDFGLAK	10	Unmodified	_LFLIDFGLAK_			0	0	0	P48729;Q8N752	P48729	P48729	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.839342	1135.66413	0.15265	8.6833E-05	-0.97826	-0.00055647	-0.82561	-0.00046964	568.838754093755	18.612	0.097546	18.612	18.577	18.674	0	600	34	0.922661313351899	0.0222993386334626	0.922661313351899	374.0458181128	0	9.04012582062893						209	12	3	NaN	NaN	NaN	0.0011833	1	7696	58.426	49.663	1	71412			11539	1116	9721	9973	11539	11539		
LFLNETQTQEITEDIPVK	18	Unmodified	_LFLNETQTQEITEDIPVK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.55188	2117.08922	1.7168	0.0018191	0.91587	0.00097041	2.6327	0.0027895	1060.05423793907	15.508	0.1952	15.508	15.455	15.65	0	129	118	1.23753038177212	0.0774114415609999	1.23753038177212	498.893679342374	0	31.2073783984692						1401	23	5	NaN	NaN	NaN	2.4639E-19	1	33577	139.94	126.16	1	471130			11540	1036	9722	9974	11540	11540		
LFLPEGPCDHTVVK	14	Unmodified	_LFLPEGPCDHTVVK_			0	0	0	Q15477	Q15477	Q15477	SKIV2L	Helicase SKI2W	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.944831	1610.81266	-0.049677	-2.6724E-05	-0.78907	-0.00042448	-0.83875	-0.0004512	538.278829132833	9.7268	0.12416	9.7268	9.6558	9.78	0	729	49	0.835224628594324	0.0326454272618066	0.835224628594324	506.094819023853	0	19.7811235880654						341	15	3	NaN	NaN	NaN	0.020901	1	21922	35.845	26.331	1	68020			11541	1853	9723	9975	11541	11541		
LFLSDGNTSEFTDIYQK	17	Unmodified	_LFLSDGNTSEFTDIYQK_			0	0	0	Q9P2D0	Q9P2D0	Q9P2D0	IBTK	Inhibitor of Bruton tyrosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.475645	1976.93674	1.4949	0.0014792	2.1292	0.0021068	3.6241	0.003586	989.980503500155	14.985	0.15962	14.985	14.87	15.03	0	195	49	1.19381749893585	0.0318567027040773	1.19381749893585	481.493714021283	0	12.8485318024998						315	19	4	NaN	NaN	NaN	0.0027786	1	31233	30.875	25.176	1	54141			11542	3157	9724	9976	11542	11542		
LFLSMDPVHGDISR	14	Unmodified	_LFLSMDPVHGDISR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.604697	1585.79226	-1.1656	-0.0006173	0.53085	0.00028114	-0.63474	-0.00033616	529.604917991907	12.556	0.10639	12.556	12.511	12.618	0	738	58	0.829104889055312	0.038747593622521	0.829104889055312	502.454116092112	0	23.4818153424268						382	13	3	NaN	NaN	NaN	0.00018668	1	21132	42.061	32.547	1	83694			11543	3048	9725	9977	11543	11543		
LFLSNMER	8	Unmodified	_LFLSNMER_			0	0	0	O14732	O14732	O14732	IMPA2	Inositol monophosphatase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.260402	1008.50625	0.10786	5.4497E-05	0.011188	5.6526E-06	0.11905	6.015E-05	505.260262896468	9.6115	0.13301	9.6115	9.5672	9.7002	0	660	31	0.882057989648486	0.020329837424522	0.882057989648486	358.125532460647	0	8.25414421493616						197	16	2	NaN	NaN	NaN	0.013463	1	4472	56.014	28.278	1	56400			11544	113	9726	9978	11544	11544		
LFLVQLQEK	9	Unmodified	_LFLVQLQEK_			0	0	0	O43809	O43809	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.334424	1116.6543	1.0481	0.00058626	-1.4794	-0.0008275	-0.43131	-0.00024125	559.333621204401	12.99	0.18619	12.99	12.928	13.114	0	591	46	0.928742107665821	0.0304039794505214	0.928742107665821	376.587838325522	0	12.3282543165204						571	22	4	NaN	NaN	NaN	5.1161E-05	1	7188	133.9	94.577	1	310560			11545	232	9727	9979	11545	11545		
LFMLLLEK	8	Unmodified	_LFMLLLEK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.803914	1005.59328	-1.4773	-0.00074426	-1.2345	-0.00062193	-2.7118	-0.0013662	503.803401221857	16.768	0.18622	16.768	16.714	16.901	0	690	37	0.86171403876517	0.0244296961484468	0.86171403876517	349.879305136614	0	9.91912018210309						501	22	4	NaN	NaN	NaN	0.00055744	1	4416	97.033	23.396	1	204780			11546	1884	9728	9980	11546	11546		
LFNEHIEALTK	11	Unmodified	_LFNEHIEALTK_			0	0	0	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.906594	1313.69795	-2.8135	-0.0012349	0.95178	0.00041774	-1.8617	-0.00081711	438.90703207388	9.0085	0.15964	9.0085	8.9553	9.1149	0	786	28	0.796423123669906	0.0184026828244152	0.796423123669906	483.511569618886	0	11.1723401709258						266	19	4	NaN	NaN	NaN	0.041549	1	12773	28.328	24.72	1	92780			11547	119	9729	9981	11547	11547		
LFNEHIEALTK	11	Unmodified	_LFNEHIEALTK_			0	0	0	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.856252	1313.69795	1.3799	0.00090781	-0.1224	-8.0519E-05	1.2576	0.00082729	657.856450862907	9.0085	0.16848	9.0085	8.9642	9.1326	0	480	46	1.00353128488872	0.0302403378372377	1.00353128488872	406.168402152798	0	12.2394487196019						379	20	3	NaN	NaN	NaN	0.00051606	1	12775	73.655	61.698	1	104160			11548	119	9729	9981	11548	11548		
LFNESHGIFLGLQR	14	Unmodified	_LFNESHGIFLGLQR_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.294852	1629.86273	-1.0568	-0.0005752	-0.74557	-0.00040581	-1.8024	-0.00098101	544.294395792387	13.052	0.079798	13.052	13.017	13.096	0	732	43	0.833184998970724	0.0285449012969368	0.833184998970724	504.808678606633	0	17.2947351698176						285	10	4	NaN	NaN	NaN	0.00036816	1	22486	48.701	43.55	1	67315			11549	2772	9730	9982	11549	11549		
LFNESHGIFLGLQR	14	Unmodified	_LFNESHGIFLGLQR_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.938639	1629.86273	1.4562	0.0011882	-1.7144	-0.0013989	-0.25817	-0.00021065	815.937008460929	13.052	0.10641	13.052	13.017	13.123	1.7764E-15	315	34	1.11400032671325	0.0220086485817799	1.11400032671325	449.96806669607	0	8.88975417283331						218	13	4	NaN	NaN	NaN	0.00019903	1	22487	52.863	45.723	1	47570			11550	2772	9730	9982	11550	11550		
LFNHLSAVSESIQALGWVAMAPK	23	Unmodified	_LFNHLSAVSESIQALGWVAMAPK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.770143	2468.2886	0.6595	0.00054328	0.10018	8.2523E-05	0.75968	0.0006258	824.104948890686	19.57	0.062063	19.57	19.543	19.605	0	471	67	1.00957851518677	0.0443739691308193	1.00957851518677	609.929089420937	0	26.8081919125887						312	8	4	NaN	NaN	NaN	2.8699E-07	1	36671	78.673	74.3	1	58165			11551	1516	9731	9983	11551	11551		
LFNIHED	7	Unmodified	_LFNIHED_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.216517	886.418482	-1.2847	-0.00057067	1.4735	0.00065455	0.18883	8.3882E-05	444.217076123623	7.9881	0.13304	7.9881	7.9261	8.0591	8.8818E-16	774	43	0.804600385996946	0.0286044998957902	0.804600385996946	327.281754477473	0	11.6352553078199						243	16	3	NaN	NaN	NaN	0.0289	1	2090	56.89	36.543	1	78953			11552	458	9732	9984	11552	11552		
LFNISGHVNHPCTVEEEMSVPLK	23	Unmodified	_LFNISGHVNHPCTVEEEMSVPLK_			0	0	0	P49821	P49821	P49821	NDUFV1	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	660.07545	2636.27269	0.23657	0.00015616	-0.22204	-0.00014656	0.014533	9.5931E-06	660.3255468157	12.139	0.10643	12.139	12.103	12.21	0	558	46	0.951016745717027	0.0303492849683255	0.951016745717027	765.791098197214	0	24.4382786844318						238	13	4	NaN	NaN	NaN	0.00052335	1	37381	53.193	47.863	1	39030			11553	1152	9733	9985	11553	11553		
LFNLVHQAYEVLSDPQTR	18	Unmodified	_LFNLVHQAYEVLSDPQTR_			0	0	0	Q9NVH1	Q9NVH1	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.704127	2129.09055	0.024429	1.7362E-05	0.056141	3.99E-05	0.08057	5.7261E-05	711.038774817335	17.317	0.11527	17.317	17.264	17.38	0	546	31	0.959108205975751	0.0202202547375568	0.959108205975751	579.95422129927	0	12.2267977874951						312	14	4	NaN	NaN	NaN	2.9437E-05	1	33732	92.747	86.543	1	86535			11554	3065	9734	9986	11554	11554		
LFPDIPIGYSGHETGIAISVAAVALGAK	28	Unmodified	_LFPDIPIGYSGHETGIAISVAAVALGAK_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	923.172482	2766.49562	1.9125	0.0017656	-0.95776	-0.00088418	0.95477	0.00088141	923.506207062959	19.782	0.044358	19.782	19.765	19.809	0	345	22	1.09397730668811	0.0140286686675297	1.09397730668811	660.519034972715	0	8.47019644153409						76	6	4	NaN	NaN	NaN	0.047008	1	37804	11.68	11.658	1	10763			11555	3013	9735	9987	11555	11555		
LFPHEVADVEPVLDLVTIQNPK	22	Unmodified	_LFPHEVADVEPVLDLVTIQNPK_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.116085	2472.32643	0.32242	0.00026604	0.66261	0.00054673	0.98503	0.00081277	825.450422399794	17.965	0.20394	17.965	17.885	18.089	0	501	22	0.98941132619024	0.0141277691793039	0.98941132619024	597.739771129354	0	8.5351049581393						288	24	4	NaN	NaN	NaN	0.022003	1	36692	25.511	25.297	1	52657			11556	2739	9736	9988	11556	11556		
LFPLIQAMHPTLAGK	15	Unmodified	_LFPLIQAMHPTLAGK_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.312966	1635.91707	-0.16255	-8.8803E-05	-1.6223	-0.00088627	-1.7848	-0.00097507	546.312313597481	15.065	0.51431	15.065	14.737	15.251	0	699	88	0.85560534332665	0.0590753930239835	0.85560534332665	518.376532033151	0	35.7913816260222						2063	59	5	NaN	NaN	NaN	2.8164E-06	1	22676	82.437	76.739	1	1315500			11557	661	9737	9989	11557	11557		
LFPLIQAMHPTLAGK	15	Oxidation (M)	_LFPLIQAM(Oxidation (M))HPTLAGK_	LFPLIQAM(1)HPTLAGK	LFPLIQAM(51)HPTLAGK	0	1	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.963268	1651.91198	1.5802	0.0013067	0.19867	0.00016429	1.7788	0.001471	826.963036233045	12.041	0.20396	12.041	11.944	12.148	0	258	28	1.15196821829984	0.0179625356920501	1.15196821829984	465.251738477007	0	7.25462805780853						313	24	3	NaN	NaN	NaN	0.0035824	1	23119	51.454	47.718	1	69200			11558	661	9737	9990	11558	11558	198	
LFPLIQTMHSNLAGK	15	Unmodified	_LFPLIQTMHSNLAGK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.45835	1668.90215	2.5308	0.0021144	-0.52947	-0.00044235	2.0013	0.001672	835.458063121144	13.753	0.51429	13.753	13.451	13.966	0	246	52	1.1599488233373	0.0338966093488604	1.1599488233373	468.43524116411	0	13.6888507971371						1240	59	5	NaN	NaN	NaN	4.0589E-08	1	23607	88.734	77.252	1	460180			11559	1653	9738	9991	11559	11559		
LFPPSSLVDPTLTPLTR	17	Unmodified	_LFPPSSLVDPTLTPLTR_			0	0	0	Q86UR5	Q86UR5	Q86UR5	RIMS1	Regulating synaptic membrane exocytosis protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.522202	1853.02985	0.8428	0.00078172	0.60211	0.00055847	1.4449	0.0013402	928.024305811996	17.406	0.33697	17.406	17.22	17.557	0	225	31	1.17390432875292	0.0199295899458025	1.17390432875292	473.682943980057	0	8.04180256143349						451	39	3	NaN	NaN	NaN	0.024974	1	28564	39.166	37.691	1	90082			11560	2168	9739	9992	11560	11560		
LFPQETLFLEAK	12	Unmodified	_LFPQETLFLEAK_			0	0	0	Q9UNN5	Q9UNN5	Q9UNN5	FAF1	FAS-associated factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.39521	1434.77587	1.9081	0.0013708	-1.028	-0.00073853	0.88009	0.00063226	718.394247615411	15.544	0.26613	15.544	15.437	15.704	-1.7764E-15	411	43	1.04982941439551	0.0281445259800737	1.04982941439551	424.533665343782	0	11.3811811803386						673	31	3	NaN	NaN	NaN	0.00042472	1	16545	77.358	65.998	1	152930			11561	3301	9740	9993	11561	11561		
LFPYALAFMPPGYEEDMK	18	Unmodified	_LFPYALAFMPPGYEEDMK_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.99939	2117.98422	0.45486	0.00048215	3.2615	0.0034572	3.7164	0.0039394	1060.00456169647	19.401	0.097577	19.401	19.348	19.446	0	114	55	1.24744674793813	0.0357062714970591	1.24744674793813	502.88993591563	0	14.3944618194097						328	12	4	NaN	NaN	NaN	0.0034847	1	33584	31.04	29.946	1	52182			11562	2785	9741	9994	11562	11562		
LFQECCPHSTDR	12	Unmodified	_LFQECCPHSTDR_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.32975	1548.64495	3.831	0.0029703	-3.5173	-0.002727	0.31377	0.00024328	775.327495551639	3.9002	0.37242	3.9002	3.8558	4.2283	0	450	127	1.02367897599655	0.0847023620711692	1.02367897599655	413.668095139858	0	34.2281765997169						1266	43	6	NaN	NaN	NaN	4.2833E-11	1	19986	130.99	109.9	1	598280			11563	1360	9742	9995	11563	11563		
LFQECCPHSTDR	12	Unmodified	_LFQECCPHSTDR_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.222259	1548.64495	1.654	0.00085547	0.44753	0.00023147	2.1015	0.0010869	517.222771965228	3.9002	0.34584	3.9002	3.847	4.1928	0	759	133	0.814815566123307	0.0898875404154099	0.814815566123307	493.896901979039	0	54.4849406214806						1664	40	6	NaN	NaN	NaN	1.3165E-07	1	19988	140.05	124.9	1	940150			11564	1360	9742	9995	11564	11564		
LFQEDDEIPLYLK	13	Unmodified	_LFQEDDEIPLYLK_			0	0	0	P14406	P14406	P14406	COX7A2	Cytochrome c oxidase subunit 7A2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.919246	1621.82394	2.9763	0.0024165	-1.3359	-0.0010846	1.6404	0.0013319	811.918320856807	15.526	0.24828	15.526	15.464	15.712	0	321	103	1.10999792833052	0.0680877301326097	1.10999792833052	448.370141693973	0	27.5032091754398						1509	29	6	NaN	NaN	NaN	1.2577E-17	1	22246	189.56	143.52	1	1181800			11565	697	9743	9996	11565	11565		
LFQEDPEAFLLYHR	14	Unmodified	_LFQEDPEAFLLYHR_			0	0	0	O43159	O43159	O43159	RRP8	Ribosomal RNA-processing protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.301783	1776.88352	-0.2039	-0.00012097	0.83601	0.00049601	0.63211	0.00037503	593.302830864854	15.012	0.15962	15.012	14.95	15.109	0	630	37	0.902373728295776	0.0243586086467772	0.902373728295776	546.347642426993	0	14.7480672249873						328	19	5	NaN	NaN	NaN	0.0028498	1	26599	69.276	65.988	1	82622			11566	185	9744	9997	11566	11566		
LFQFLQAEPHNSLGK	15	Unmodified	_LFQFLQAEPHNSLGK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.973778	1727.8995	-0.13347	-7.7006E-05	2.1878	0.0012623	2.0543	0.0011853	577.310854130811	12.298	0.1596	12.298	12.245	12.405	-1.7764E-15	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	547.696768523407	0	13.5229623681207						354	19	5	NaN	NaN	NaN	0.00254	1	25275	79.889	74.502	1	104990			11567	2063	9745	9998	11567	11567		
LFQFLQAEPHNSLGK	15	Unmodified	_LFQFLQAEPHNSLGK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.957029	1727.8995	1.7709	0.0015318	0.64873	0.00056113	2.4197	0.0020929	865.459132291173	12.298	0.08869	12.298	12.272	12.361	0	237	37	1.16593139812432	0.0239286585305469	1.16593139812432	470.718839787056	0	9.66066305382975						227	11	4	NaN	NaN	NaN	1.0646E-08	1	25276	124.06	87.82	1	40823			11568	2063	9745	9998	11568	11568		
LFQITPDK	8	Unmodified	_LFQITPDK_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.271293	960.528032	-1.6749	-0.0008061	-1.4056	-0.00067648	-3.0806	-0.0014826	481.270687710685	8.8487	0.097755	8.8487	8.8044	8.9021	0	777	22	0.802556497112065	0.0143092140004129	0.802556497112065	326.0660140319	0	5.8136073782137						101	12	2	NaN	NaN	NaN	0.04824	1	3458	37.722	18.235	1	21129			11569	2465	9746	9999	11569	11569		
LFQLMVEHTPDEESIDWTK	19	Unmodified	_LFQLMVEHTPDEESIDWTK_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.371826	2317.09365	0.80182	0.00062011	-0.62342	-0.00048214	0.1784	0.00013797	773.705749544668	15.127	0.10643	15.127	15.092	15.198	0	588	52	0.93076847747433	0.0344482986469864	0.93076847747433	562.521939501756	0	20.819273789784						540	13	5	NaN	NaN	NaN	1.0019E-10	1	35789	86.952	74.269	1	158570			11570	1607	9747	10000	11570	11570		
LFQQIYSDGSDEVK	14	Unmodified	_LFQQIYSDGSDEVK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.89376	1627.77297	2.6377	0.0021495	-0.31741	-0.00025865	2.3203	0.0018908	814.893382422245	10.33	0.17732	10.33	10.268	10.445	0	321	67	1.10999792833052	0.0440506641076943	1.10999792833052	448.356259939152	0	17.7931782601315						782	21	5	NaN	NaN	NaN	1.0236E-16	1	22399	186.27	165.12	1	355470			11571	3359	9748	10001	11571	11571		
LFQSNDQTLR	10	Unmodified	_LFQSNDQTLR_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.314751	1220.61495	1.4917	0.00091188	-2.9134	-0.001781	-1.4217	-0.00086912	611.313794384449	6.1702	0.097534	6.1702	6.1081	6.2057	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.479024826412	0	9.02506994812933						170	12	3	NaN	NaN	NaN	0.00015055	1	10031	78.816	37.02	1	49541			11572	3173	9749	10002	11572	11572		
LFQVEYAIEAIK	12	Unmodified	_LFQVEYAIEAIK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.39521	1422.77587	1.1391	0.00081148	0.098992	7.0522E-05	1.2381	0.000882	712.395321055722	16.315	0.22169	16.315	16.262	16.484	0	432	67	1.035754240522	0.044233231257419	1.035754240522	418.875623349273	0	17.8886280073216						1102	26	5	NaN	NaN	NaN	3.5051E-07	1	16183	145.75	116.44	1	575420			11573	872	9750	10003	11573	11573		
LFSADPFDLEAQAK	14	Unmodified	_LFSADPFDLEAQAK_			0	0	0	Q5TDH0	Q5TDH0	Q5TDH0	DDI2	Protein DDI1 homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.388113	1550.76167	1.2554	0.00097464	2.2036	0.0017109	3.459	0.0026855	776.389032968776	15.304	0.17733	15.304	15.216	15.393	0	396	52	1.05987478976334	0.0341495757377568	1.05987478976334	428.289601096144	0	13.7996566307537						539	21	4	NaN	NaN	NaN	1.1871E-05	1	20075	88.24	80.683	1	120410			11574	1999	9751	10004	11574	11574		
LFSEGLFSAK	10	Unmodified	_LFSEGLFSAK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.795132	1097.57571	0.5665	0.00031146	-2.3591	-0.001297	-1.7926	-0.00098557	549.794064574661	12.76	0.15961	12.76	12.689	12.848	0	642	40	0.894250814548268	0.0264086306406944	0.894250814548268	362.679098494702	0	10.7104832306861						362	19	4	NaN	NaN	NaN	0.0010362	1	6649	76.605	47.294	1	121730			11575	1784	9752	10005	11575	11575		
LFSEVENK	8	Unmodified	_LFSEVENK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.250557	964.486562	-0.4458	-0.00021543	0.8562	0.00041376	0.4104	0.00019833	483.251436444796	5.381	0.2128	5.381	5.2745	5.4873	0	747	43	0.822982596624503	0.0285806380781382	0.822982596624503	334.345439415545	0	11.611188421487						435	25	3	NaN	NaN	NaN	0.013463	1	3529	56.014	26.704	1	107610			11576	702	9753	10006	11576	11576		
LFSEYHEK	8	Unmodified	_LFSEYHEK_			0	0	0	Q9BXW7	Q9BXW7	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.756007	1051.49746	2.0556	0.0010828	2.0097	0.0010586	4.0654	0.0021415	526.756816473912	3.8204	0.053219	3.8204	3.7849	3.8381	0	639	19	0.896281965493857	0.0121860610078076	0.896281965493857	363.700282982663	0	4.94495483298221						57	7	2	NaN	NaN	NaN	0.067216	1	5501	39.324	35.431	1	10732			11577	2790	9754	10007	11577	11577		
LFSILSTVLLR	11	Unmodified	_LFSILSTVLLR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.397556	1260.78056	-0.11659	-7.3614E-05	0.0084111	5.3107E-06	-0.10818	-6.8303E-05	631.39747543075	19.605	0.062077	19.605	19.587	19.649	0	552	19	0.955063035883597	0.0121371906788001	0.955063035883597	386.720215502159	0	4.91454157322079						88	8	3	NaN	NaN	NaN	0.00083637	1	11253	72.042	51.808	1	18063			11578	2192	9755	10008	11578	11578		
LFSLELVDESGEIR	14	Unmodified	_LFSLELVDESGEIR_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.919778	1605.825	0.94901	0.00076293	1.8152	0.0014593	2.7643	0.0022222	803.922255192443	16.307	0.20393	16.307	16.262	16.466	0	384	73	1.06790610341098	0.0481480647250785	1.06790610341098	431.404045226009	0	19.4504646296687						565	24	4	NaN	NaN	NaN	9.8325E-12	1	21780	163.59	138.76	1	164770			11579	865	9756	10009	11579	11579		
LFSQETVMK	9	Unmodified	_LFSQETVMK_			0	0	0	Q9HDC9	Q9HDC9	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.781167	1081.54778	0.81038	0.00043905	1.0947	0.00059311	1.9051	0.0010322	541.782037398538	7.4915	0.22165	7.4915	7.394	7.6156	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	367.687522782807	0	9.87950544063574						441	26	4	NaN	NaN	NaN	0.0036279	1	6244	62.969	24.647	1	122990			11580	2973	9757	10010	11580	11580		
LFSSVTFETVEESK	14	Unmodified	_LFSSVTFETVEESK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.898511	1601.78247	2.7493	0.0022047	0.13832	0.00011092	2.8876	0.0023156	802.40044731241	12.893	0.18622	12.893	12.795	12.981	0	375	34	1.07392668217569	0.0220754584082121	1.07392668217569	433.845559066904	0	8.91805721352046						450	22	5	NaN	NaN	NaN	0.0047875	1	21638	50.116	42.976	1	160490			11581	2947	9758	10011	11581	11581		
LFTAHNNMTNYATVWASK	18	Unmodified	_LFTAHNNMTNYATVWASK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.335158	2067.98365	0.041034	2.8327E-05	-0.63739	-0.00044001	-0.59635	-0.00041168	690.668939444171	11.758	0.088682	11.758	11.731	11.82	0	597	40	0.924688525662974	0.0263574177216448	0.924688525662974	559.248273530265	0	15.9408708407813						184	11	4	NaN	NaN	NaN	7.2153E-07	1	32844	96.27	90.368	1	41004			11582	1575	9759	10012	11582	11582		
LFTNFSGADLLK	12	Unmodified	_LFTNFSGADLLK_			0	0	0	Q12800	Q12800	Q12800	TFCP2	Alpha-globin transcription factor CP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.358628	1324.7027	0.49202	0.00032639	0.79402	0.00052672	1.286	0.0008531	663.359103445937	15.189	0.088694	15.189	15.154	15.242	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	403.684924440681	0	7.34709361083571						177	11	3	NaN	NaN	NaN	0.00039642	1	13141	90.142	77.547	1	37172			11583	1597	9760	10013	11583	11583		
LFTPYTETEINEEELTK	17	Unmodified	_LFTPYTETEINEEELTK_			0	0	0	P26374	P26374	P26374	CHML	Rab proteins geranylgeranyltransferase component A 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.00169	2055.98883	1.7405	0.001791	4.6646	0.0047999	6.4051	0.0065909	1029.00786359763	13.292	0.10642	13.292	13.238	13.345	0	189	34	1.1977968526266	0.0218849460359061	1.1977968526266	482.969143649316	0	8.82432911941214						259	13	4	NaN	NaN	NaN	0.00018527	1	32639	79.795	70.533	1	66390			11584	852	9761	10014	11584	11584		
LFTSAEETFSHCK	13	Unmodified	_LFTSAEETFSHCK_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.856123	1555.69769	2.6727	0.0020817	-0.35656	-0.00027771	2.3162	0.001804	778.855839890209	7.6334	0.079781	7.6334	7.5979	7.6777	0	324	31	1.1079963157843	0.020020262712183	1.1079963157843	447.722685251183	0	8.08985161163451						228	10	4	NaN	NaN	NaN	0.0003289	1	20221	58.889	51.75	1	58389			11585	273	9762	10015	11585	11585		
LFTTTEQDEQGSK	13	Unmodified	_LFTTTEQDEQGSK_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.349185	1482.68382	1.7307	0.0012848	0.43231	0.00032092	2.163	0.0016057	742.349433120333	4.7425	0.16847	4.7425	4.6982	4.8667	0	489	25	0.997481546940468	0.0161359806819593	0.997481546940468	403.240569743332	0	6.52311019037734						171	20	3	NaN	NaN	NaN	4.2331E-11	1	17985	94.66	85.683	1	36926			11586	1758	9763	10016	11586	11586		
LFTVPWPVK	9	Unmodified	_LFTVPWPVK_			0	0	0	Q9C0B1	Q9C0B1	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.820953	1085.62735	-0.59756	-0.00032497	-1.5813	-0.00085994	-2.1788	-0.0011849	543.819993198721	16.014	0.22168	16.014	15.908	16.129	0	684	46	0.86578508874114	0.0305434851459953	0.86578508874114	351.182233040659	0	12.3891361238514						443	26	2	NaN	NaN	NaN	0.00065225	1	6366	75.243	51.668	1	174330			11587	2818	9764	10017	11587	11587		
LFTWNILK	8	Unmodified	_LFTWNILK_			0	0	0	Q8IXU6	Q8IXU6	Q8IXU6	SLC35F2	Solute carrier family 35 member F2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.805303	1033.59605	-0.66943	-0.00034663	-1.6206	-0.00083916	-2.29	-0.0011858	517.804338509364	15.97	0.097517	15.97	15.925	16.023	-3.5527E-15	675	28	0.871889544407995	0.0183082845696197	0.871889544407995	353.881348673734	0	7.43094177118354						179	12	3	NaN	NaN	NaN	0.011146	1	5098	63.301	48.766	1	43981			11588	2215	9765	10018	11588	11588		
LFVALQGCMDK	11	Unmodified	_LFVALQGCMDK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.320134	1280.62571	0.92278	0.00059179	-1.4961	-0.00095949	-0.57334	-0.00036769	641.821195623201	11.536	0.097571	11.536	11.5	11.598	0	522	22	0.975277694896658	0.014139497057216	0.975277694896658	394.839152779741	0	5.7243460688336						96	12	2	NaN	NaN	NaN	0.005244	1	11769	65.404	58.713	1	51869			11589	1145	9766	10019	11589	11589		
LFVDTDADTR	10	Unmodified	_LFVDTDADTR_			0	0	0	Q9BZX2	Q9BZX2	Q9BZX2	UCK2	Uridine-cytidine kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.78021	1151.54587	1.0339	0.00059633	0.86626	0.00049964	1.9002	0.001096	576.781084551646	7.2964	0.29261	7.2964	7.1989	7.4915	0	618	40	0.910492137470517	0.0263756909350701	0.910492137470517	369.051373639359	0	10.6909050278207						535	33	3	NaN	NaN	NaN	0.0010136	1	8104	98.009	61.439	1	165460			11590	2815	9767	10020	11590	11590		
LFVGEPVWTAYNRPADHFEAR	21	Unmodified	_LFVGEPVWTAYNRPADHFEAR_			0	0	1	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	619.560558	2474.21313	1.442	0.00089338	-0.0058812	-3.6438E-06	1.4361	0.00088973	619.811628769836	12.733	0.15964	12.733	12.653	12.813	0	573	37	0.940896116921038	0.0242945584092671	0.940896116921038	757.901649362653	0	19.569520543006						481	19	6	NaN	NaN	NaN	1.7196E-05	1	36703	58.794	57.983	1	156240			11591	2757	9768	10021	11591	11591		
LFVGGLDWSTTQETLR	16	Unmodified	_LFVGGLDWSTTQETLR_			0	0	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.970333	1821.92611	1.7629	0.0016077	-0.35158	-0.00032063	1.4113	0.0012871	912.471213804253	16.067	0.30148	16.067	15.97	16.271	0	258	61	1.15196821829984	0.039924995069111	1.15196821829984	464.890450169491	0	16.1122057326261						832	35	4	NaN	NaN	NaN	2.0664E-06	1	27773	102.03	77.34	1	424120			11592	2517	9769	10022	11592	11592		
LFVGGLK	7	Unmodified	_LFVGGLK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	367.233982	732.453411	-0.53482	-0.00019641	-2.7424	-0.0010071	-3.2772	-0.0012035	367.232793980109	7.2343	0.19508	7.2343	7.19	7.3851	0	885	34	0.728786607772777	0.0225958260980745	0.728786607772777	297.391784857142	0	9.22054958469147						389	23	3	NaN	NaN	NaN	0.056691	1	506	39.761	0	1	165510			11593	1635	9770	10023	11593	11593		
LFVGGLK	7	Unmodified	_LFVGGLK_			0	0	0	Q13151	Q13151	Q13151	HNRNPA0	Heterogeneous nuclear ribonucleoprotein A0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	367.233982	732.453411	-0.71434	-0.00026233	-2.4972	-0.00091704	-3.2115	-0.0011794	367.233048740411	7.9083	0.15967	7.9083	7.864	8.0237	8.8818E-16	882	31	0.730840773481911	0.0205402269243722	0.730840773481911	298.230015171801	0	8.38173294314618						312	19	3	NaN	NaN	NaN	0.066925	1	507	32.971	0	1	137370			11594	1635	9770	10023	11594	11594		
LFVGNLPADITEDEFK	16	Unmodified	_LFVGNLPADITEDEFK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.459267	1806.90398	1.8871	0.0017068	1.0673	0.00096537	2.9544	0.0026721	904.460666579551	16.581	0.39902	16.581	16.44	16.839	0	273	64	1.14198628764525	0.0419414306619383	1.14198628764525	460.891063710633	0	16.9270251319614						1886	46	6	NaN	NaN	NaN	2.4489E-18	1	27397	230.23	207.28	1	2300700			11595	814	9771	10024	11595	11595		
LFVGNLPADITEDEFKR	17	Unmodified	_LFVGNLPADITEDEFKR_			0	0	1	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.342307	1963.00509	0.68083	0.00044617	-0.86079	-0.00056411	-0.17996	-0.00011794	655.676146255804	14.639	0.11529	14.639	14.595	14.71	0	606	73	0.918606045818476	0.0486295401630769	0.918606045818476	555.767533667795	0	29.4214475539962						473	14	2	NaN	NaN	NaN	5.2665E-10	1	30985	151.52	120.48	1	278770			11596	814	9772	10025	11596	11596		
LFVGNLPPDITEEEMR	16	Unmodified	_LFVGNLPPDITEEEMR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.464026	1858.9135	1.3828	0.0012866	3.4891	0.0032465	4.8719	0.0045331	930.467020425838	14.737	0.28379	14.737	14.604	14.888	0	276	85	1.13998907770044	0.0558873329560672	1.13998907770044	459.986949753853	0	22.5506053691286						1596	33	4	NaN	NaN	NaN	0.00017228	1	28674	98.167	89.011	1	646910			11597	1824	9773	10026	11597	11597		
LFVGNLPPDITEEEMR	16	Unmodified	_LFVGNLPPDITEEEMR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.464026	1858.9135	1.9261	0.0017922	3.9079	0.0036362	5.834	0.0054283	930.969112200929	15.429	0.28387	15.429	15.278	15.562	0	267	79	1.14597988355104	0.05189537397897	1.14597988355104	462.404245609307	0	20.9398451053088						581	33	2	NaN	NaN	NaN	0.06454	1	28675	30.068	8.7067	1	230230			11598	1824	9773	10026	11598	11598		
LFVGNLPTDITEEDFK	16	Unmodified	_LFVGNLPTDITEEDFK_			0	0	0	Q8WXF1	Q8WXF1	Q8WXF1	PSPC1	Paraspeckle component 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.464549	1836.91455	1.6464	0.0015138	0.49286	0.00045317	2.1392	0.0019669	919.464921144703	16.218	0.20393	16.218	16.165	16.369	0	246	64	1.1599488233373	0.0419010776122248	1.1599488233373	468.082257567375	0	16.9086347678743						686	24	4	NaN	NaN	NaN	1.7417E-05	1	28158	104.49	98.463	1	246450			11599	2397	9774	10027	11599	11599		
LFVGSIPK	8	Unmodified	_LFVGSIPK_			0	0	0	O43390;O60506	O43390;O60506	O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.765646	859.516739	-2.0025	-0.00086261	-2.0582	-0.00088661	-4.0607	-0.0017492	430.764737844723	9.1681	0.18619	9.1681	9.1149	9.3011	0	798	40	0.788241307691771	0.0265927576463694	0.788241307691771	320.780482755432	0	10.8221144367332						317	22	3	NaN	NaN	NaN	0.032806	1	1714	60.709	29.65	1	92913			11600	263;196	9775	10028	11600	11600		
LFVINEVCEMK	11	Unmodified	_LFVINEVCEMK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.346348	1380.67814	1.9319	0.0013356	0.2758	0.00019067	2.2077	0.0015263	691.346898189633	13.549	0.2128	13.549	13.487	13.7	0	459	37	1.01763759082241	0.0241705518393689	1.01763759082241	411.669745801215	0	9.77782760908701						503	25	3	NaN	NaN	NaN	7.7686E-05	1	14854	90.263	75.5	1	382240			11601	2348	9776	10029	11601	11601		
LFVINEVCEMK	11	Oxidation (M)	_LFVINEVCEM(Oxidation (M))K_	LFVINEVCEM(1)K	LFVINEVCEM(74)K	0	1	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.343806	1396.67306	1.5005	0.0010494	0.04231	2.9589E-05	1.5428	0.001079	699.344699797589	11.287	0.17739	11.287	11.216	11.394	0	474	31	1.00756305028564	0.0201588292942909	1.00756305028564	407.547963120837	0	8.15402055033667						271	21	3	NaN	NaN	NaN	0.012912	1	15338	74.269	60.274	1	77785			11602	2348	9776	10030	11602	11602	595	
LFVLFGAEILK	11	Unmodified	_LFVLFGAEILK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.381374	1248.7482	-0.2142	-0.00013396	0.29664	0.00018551	0.082439	5.1556E-05	625.381538439238	19.215	0.097542	19.215	19.188	19.286	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	389.217598062337	0	8.18835739404625						200	12	3	NaN	NaN	NaN	0.010883	1	10893	41.796	37.256	1	61509			11603	1002	9777	10031	11603	11603		
LFVLLPEQSPVSYSK	15	Unmodified	_LFVLLPEQSPVSYSK_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.971813	1705.92907	1.2526	0.0010697	-0.72288	-0.00061732	0.52976	0.0004524	853.97045561953	15.704	0.11526	15.704	15.659	15.775	0	303	34	1.12200181823275	0.0220025900053455	1.12200181823275	453.029680930074	0	8.88396628933901						309	14	3	NaN	NaN	NaN	0.0042484	1	24663	50.116	41.31	1	83034			11604	2572	9778	10032	11604	11604		
LFVPALDKPETDLLSHLDR	19	Unmodified	_LFVPALDKPETDLLSHLDR_			0	0	1	Q9UNI6	Q9UNI6	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	545.549394	2178.16847	-0.98516	-0.00053745	-0.1104	-6.023E-05	-1.0956	-0.00059768	545.800275964532	15.872	0.097536	15.872	15.828	15.925	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	699.568024922118	0	18.0459160118528						286	12	4	NaN	NaN	NaN	0.054773	1	34427	26.929	26.054	1	71375			11605	3297	9779	10033	11605	11605		
LFVPALDKPETDLLSHLDR	19	Unmodified	_LFVPALDKPETDLLSHLDR_			0	0	1	Q9UNI6	Q9UNI6	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.063433	2178.16847	0.23076	0.00016778	0.12861	9.3506E-05	0.35937	0.00026128	727.397808006094	15.863	0.079796	15.863	15.828	15.908	0	477	22	1.0055473068722	0.0141102047023627	1.0055473068722	607.946331488494	0	8.5309235346034						130	10	3	NaN	NaN	NaN	0.00021629	1	34428	36.902	27.746	1	23383			11606	3297	9779	10033	11606	11606		
LFVQDLATR	9	Unmodified	_LFVQDLATR_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.800749	1061.58694	0.85452	0.00045444	-0.19068	-0.00010141	0.66384	0.00035303	531.800652451536	10.427	0.13303	10.427	10.374	10.507	0	618	37	0.910492137470517	0.0243518545960122	0.910492137470517	369.421214645742	0	9.88047159718241						258	16	3	NaN	NaN	NaN	0.0012131	1	5775	84.368	55.058	1	72763			11607	944	9780	10034	11607	11607		
LFVTGLFSLNQDIPAFK	17	Unmodified	_LFVTGLFSLNQDIPAFK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.524744	1909.03494	1.2018	0.0011484	-0.066678	-6.3713E-05	1.1352	0.0010847	956.026493938253	19.942	0.035486	19.942	19.933	19.969	0	225	58	1.17390432875292	0.0378584295495608	1.17390432875292	473.579679035546	0	15.2729506789684						179	5	3	NaN	NaN	NaN	1.6019E-25	1	29827	196.38	185.41	1	96191			11608	135	9781	10035	11608	11608		
LFVTNDAATILR	12	Unmodified	_LFVTNDAATILR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.377352	1332.74015	1.2033	0.00080305	1.2612	0.0008417	2.4645	0.0016448	667.37841549356	13.442	0.30149	13.442	13.389	13.691	0	504	49	0.987393073566096	0.032289819448596	0.987393073566096	399.577196016532	0	13.0670103533863						800	35	5	NaN	NaN	NaN	4.0331E-11	1	13382	159.93	120.92	1	821860			11609	1174	9782	10036	11609	11609		
LFVWEILHSTIR	12	Unmodified	_LFVWEILHSTIR_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.289038	1512.84528	-1.6012	-0.00080905	0.20754	0.00010487	-1.3936	-0.00070419	505.289283210667	17.876	0.1241	17.876	17.832	17.956	0	726	25	0.837263974740672	0.0163136366798808	0.837263974740672	507.610170119402	0	9.89051020964484						215	15	4	NaN	NaN	NaN	0.00025117	1	18904	90.263	75.807	1	56819			11610	1583	9783	10037	11610	11610		
LFVYDPNNPPSSEVLR	16	Unmodified	_LFVYDPNNPPSSEVLR_			0	0	0	Q15165	Q15165	Q15165	PON2	Serum paraoxonase/arylesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.970333	1845.92611	2.2598	0.002088	-0.12333	-0.00011395	2.1365	0.001974	924.47167979945	13.318	0.42568	13.318	13.114	13.54	0	276	61	1.13998907770044	0.0399414707956318	1.13998907770044	460.010933029872	0	16.117271302587						1524	49	5	NaN	NaN	NaN	0.00018434	1	28382	75.5	61.138	1	511880			11611	1819	9784	10038	11611	11611		
LFWPFSK	7	Unmodified	_LFWPFSK_			0	0	0	Q9Y3P9	Q9Y3P9	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.752539	923.490525	-2.2613	-0.0010464	-0.76305	-0.0003531	-3.0243	-0.0013995	462.752120522144	16.493	0.23053	16.493	16.404	16.635	0	753	16	0.81889964927511	0.0102080783980426	0.81889964927511	332.894191866548	0	4.14972702923347						146	27	2	NaN	NaN	NaN	0.032518	1	2768	46.835	29.141	1	24754			11612	3397	9785	10039	11612	11612		
LFYADHPFIFLVR	13	Unmodified	_LFYADHPFIFLVR_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.632805	1636.87658	-2.061	-0.0011266	0.38803	0.00021211	-1.673	-0.00091453	546.967298442222	17.14	0.088672	17.14	17.105	17.193	0	744	46	0.82502364452135	0.0305987056772422	0.82502364452135	499.845856721607	0	18.538421723279						213	11	3	NaN	NaN	NaN	0.021754	1	22693	36.514	33.412	1	42539			11613	1164	9786	10040	11613	11613		
LFYADHPFIFLVR	13	Unmodified	_LFYADHPFIFLVR_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.632805	1636.87658	-0.4009	-0.00021914	-0.47203	-0.00025802	-0.87292	-0.00047717	546.966897846551	17.149	0.19507	17.149	17.087	17.282	0	636	52	0.898312834727904	0.0345391592225333	0.898312834727904	544.248585726456	0	20.9257708810744						756	23	5	NaN	NaN	NaN	8.4706E-05	1	22694	99.855	94.704	1	317310			11614	1164	9786	10040	11614	11614		
LFYADHPFIFLVR	13	Unmodified	_LFYADHPFIFLVR_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.445569	1636.87658	0.97036	0.00079516	1.6575	0.0013582	2.6278	0.0021534	819.446838895047	17.14	0.15072	17.14	17.096	17.246	0	285	34	1.13399579921816	0.0219783806996243	1.13399579921816	458.028102222389	0	8.87720748940222						387	18	4	NaN	NaN	NaN	3.276E-11	1	22695	159.11	138.93	1	111940			11615	1164	9786	10040	11615	11615		
LFYHIVDSDEVSTK	14	Unmodified	_LFYHIVDSDEVSTK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.610394	1651.80935	-1.1601	-0.00063993	-0.11277	-6.2204E-05	-1.2729	-0.00070214	551.94455012297	9.5317	0.15067	9.5317	9.4874	9.6381	0	750	37	0.820941264895493	0.0244942818992349	0.820941264895493	497.33483111481	0	14.8388929544007						374	18	4	NaN	NaN	NaN	0.0006046	1	23102	42.446	38.463	1	111420			11616	3321	9787	10041	11616	11616		
LFYHIVDSDEVSTK	14	Unmodified	_LFYHIVDSDEVSTK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.911953	1651.80935	2.561	0.0021177	-1.1247	-0.00093001	1.4363	0.0011877	827.41269994174	9.5317	0.18621	9.5317	9.4519	9.6381	0	336	34	1.09998710857178	0.0220329079288653	1.09998710857178	444.258076355736	0	8.89855637100135						422	22	4	NaN	NaN	NaN	4.2766E-06	1	23103	78.864	72.836	1	95643			11617	3321	9787	10041	11617	11617		
LFYLALPPTVYEAVTK	16	Unmodified	_LFYLALPPTVYEAVTK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.010938	1824.00732	1.2695	0.0011591	0.73216	0.00066847	2.0017	0.0018275	913.513225602779	19.304	0.21284	19.304	19.259	19.472	0	243	79	1.16194328902838	0.051873973184543	1.16194328902838	468.911962389928	0	20.9341770743963						1450	25	6	NaN	NaN	NaN	6.803E-05	1	27840	88.734	74.956	1	1110100			11618	653	9788	10042	11618	11618		
LFYSTFATDDR	11	Unmodified	_LFYSTFATDDR_			0	0	0	P30084	P30084	P30084	ECHS1	Enoyl-CoA hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.314417	1334.61428	0.87796	0.00058675	3.6269	0.0024239	4.5049	0.0030107	668.316663828428	11.181	0.133	11.181	11.137	11.27	0	495	28	0.993446994398923	0.018159253288641	0.993446994398923	402.021286839415	0	7.34856154007423						181	16	3	NaN	NaN	NaN	0.0047828	1	13418	43.168	36.905	1	42237			11619	901	9789	10043	11619	11619		
LGAAPEEESAYVAGEK	16	Unmodified	_LGAAPEEESAYVAGEK_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.891217	1619.76788	2.9258	0.0023725	-1.6099	-0.0013054	1.3159	0.001067	810.890002727057	6.9239	0.20391	6.9239	6.853	7.0569	0	405	52	1.05384839605172	0.0341542869756604	1.05384839605172	425.693799237623	0	13.796356513321						651	24	5	NaN	NaN	NaN	3.003E-12	1	22175	156.02	148.88	1	260040			11620	3309	9790	10044	11620	11620		
LGAASLGAEDPETQVVLINAVK	22	Unmodified	_LGAASLGAEDPETQVVLINAVK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.09953	2194.18451	0.42892	0.000471	-0.5887	-0.00064645	-0.15978	-0.00017545	1098.60054053965	15.242	0.06203	15.242	15.207	15.269	0	96	52	1.2593374219024	0.0336648790811453	1.2593374219024	507.568624946281	0	13.56843375494						190	8	3	NaN	NaN	NaN	0.012815	1	34616	22.724	21.544	1	42251			11621	3406	9791	10045	11621	11621		
LGADAVGMSTVPEVIVAR	18	Oxidation (M)	_LGADAVGM(Oxidation (M))STVPEVIVAR_	LGADAVGM(1)STVPEVIVAR	LGADAVGM(120)STVPEVIVAR	0	1	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.979844	1799.94513	1.6261	0.0014651	1.1339	0.0010216	2.76	0.0024867	901.48305523402	12.227	0.1064	12.227	12.192	12.298	0	210	73	1.18386433251387	0.0477916352586294	1.18386433251387	477.806576040009	0	19.2886608533847						565	13	4	NaN	NaN	NaN	1.5039E-09	1	27213	117.41	115.11	1	125980			11622	480	9792	10046	11622	11622	74	
LGADESEEEGR	11	Unmodified	_LGADESEEEGR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.259839	1190.50512	1.2321	0.00073466	0.21201	0.00012642	1.4441	0.00086107	596.259868300153	2.703	0.079843	2.703	2.6853	2.7651	0	702	19	0.853568545818287	0.0122216343597983	0.853568545818287	345.844422246259	0	4.95189764756077						83	10	2	NaN	NaN	NaN	0.0051384	1	9162	48.785	35.512	1	18100			11623	240	9793	10047	11623	11623		
LGADSQFSDFLDGLGPAQLVGR	22	Unmodified	_LGADSQFSDFLDGLGPAQLVGR_			0	0	0	Q86UR5	Q86UR5	Q86UR5	RIMS1	Regulating synaptic membrane exocytosis protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1132.07131	2262.12806	0.71035	0.00080416	-0.12654	-0.00014325	0.58381	0.00066091	1132.57246225995	19.729	0.062077	19.729	19.694	19.756	0	84	49	1.26725910986255	0.0316824211667004	1.26725910986255	510.664883535214	0	12.7670022565169						294	8	4	NaN	NaN	NaN	0.000698	1	35298	32.692	31.356	1	62240			11624	2168	9794	10048	11624	11624		
LGAEVYHTLK	10	Unmodified	_LGAEVYHTLK_			0	0	0	P09104	P09104	P09104	ENO2	Gamma-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.813856	1129.61316	1.8571	0.0010508	-0.22575	-0.00012773	1.6313	0.00092304	565.813576277485	5.5494	0.12412	5.5494	5.5139	5.6381	0	546	31	0.959108205975751	0.0202230534711471	0.959108205975751	388.846323273161	0	8.19892889938524						196	15	3	NaN	NaN	NaN	0.0013898	1	7526	81.163	39.089	1	67084			11625	596	9795	10049	11625	11625		
LGAFFLER	8	Unmodified	_LGAFFLER_			0	0	0	Q9BRX5	Q9BRX5	Q9BRX5	GINS3	DNA replication complex GINS protein PSF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.766178	951.517802	-1.0607	-0.0005057	-0.0047316	-2.2559E-06	-1.0654	-0.00050796	476.766119024116	13.203	0.16848	13.203	13.159	13.327	0	729	37	0.835224628594324	0.0244704573832687	0.835224628594324	339.383890458938	0	9.94328800148099						243	20	3	NaN	NaN	NaN	0.014717	1	3279	65.313	39.089	1	63365			11626	2717	9796	10050	11626	11626		
LGAGPDGVEEIK	12	Unmodified	_LGAGPDGVEEIK_			0	0	0	P51812	P51812	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.81151	1183.60847	1.355	0.00080329	-0.063967	-3.792E-05	1.2911	0.00076537	592.811337190969	6.8707	0.133	6.8707	6.8175	6.9505	0	588	25	0.93076847747433	0.0162098367648951	0.93076847747433	377.149060204007	0	6.5682549956245						203	16	4	NaN	NaN	NaN	0.0057741	1	8974	38.1	27.312	1	66440			11627	1200	9797	10051	11627	11627		
LGALTAEEIALK	12	Unmodified	_LGALTAEEIALK_			0	0	0	Q13601	Q13601	Q13601	KRR1	KRR1 small subunit processome component homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.861003	1227.70745	-0.12447	-7.6532E-05	-1.324	-0.0008141	-1.4485	-0.00089063	614.860341502488	11.935	0.14188	11.935	11.882	12.024	0	549	25	0.957085760909907	0.016178442079587	0.957085760909907	387.652337024134	0	6.55282017318802						214	17	3	NaN	NaN	NaN	0.032882	1	10244	40.533	21.277	1	72795			11628	1690	9798	10052	11628	11628		
LGAMDIDTHK	10	Unmodified	_LGAMDIDTHK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	367.518341	1099.53319	0.054297	1.9955E-05	-1.7081	-0.00062777	-1.6538	-0.00060781	367.517808972032	5.0706	0.097529	5.0706	5.044	5.1415	0	894	22	0.722622390967862	0.0143851800951968	0.722622390967862	439.593585232195	0	8.75095066427252						134	12	3	NaN	NaN	NaN	0.054019	1	6691	26.947	19.3	1	26860			11629	1807	9799	10053	11629	11629		
LGANILLETFK	11	Unmodified	_LGANILLETFK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.858264	1217.70197	0.22709	0.00013849	-1.0389	-0.00063359	-0.81182	-0.00049509	609.857651495919	15.828	0.12415	15.828	15.783	15.908	0	582	28	0.934820374997243	0.0182297522282956	0.934820374997243	378.668684072091	0	7.38434513397215						264	15	4	NaN	NaN	NaN	5.6192E-05	1	9966	114.39	89.14	1	93595			11630	3067	9800	10054	11630	11630		
LGANSLLDLVVFGR	14	Unmodified	_LGANSLLDLVVFGR_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.424833	1472.83511	0.69954	0.00051586	-0.59232	-0.00043679	0.10722	7.907E-05	737.424091411558	19.969	0.079828	19.969	19.951	20.031	0	432	40	1.035754240522	0.0261540485744427	1.035754240522	418.738531075367	0	10.5736548818922						210	10	5	NaN	NaN	NaN	2.9091E-17	1	17685	200.76	169.84	1	145160			11631	919	9801	10055	11631	11631		
LGAPAAGGEEEWGQQQR	17	Unmodified	_LGAPAAGGEEEWGQQQR_			0	0	0	O94992	O94992	O94992	HEXIM1	Protein HEXIM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.421539	1782.82852	2.7615	0.0024644	-3.819	-0.0034082	-1.0575	-0.00094376	892.417914479807	7.19	0.21287	7.19	7.1102	7.3231	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	436.706211912317	0	11.3333364532683						541	25	4	NaN	NaN	NaN	7.5154E-07	1	26751	84.999	79.612	1	164510			11632	401	9802	10056	11632	11632		
LGAPQTHLGLK	11	Unmodified	_LGAPQTHLGLK_			0	0	0	Q96C19;Q9BUP0	Q96C19	Q96C19	EFHD2;EFHD1	EF-hand domain-containing protein D2;EF-hand domain-containing protein D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.892507	1133.65569	-0.70617	-0.00026756	-0.9677	-0.00036665	-1.6739	-0.00063422	378.892108364674	6.0017	0.088686	6.0017	5.9751	6.0638	0	858	25	0.747263789720611	0.0164138593220675	0.747263789720611	454.414609589949	0	9.98134471160489						135	11	3	NaN	NaN	NaN	0.069628	1	7640	12.596	8.3932	1	33490			11633	2488	9803	10057	11633	11633		
LGAPQTHLGLK	11	Unmodified	_LGAPQTHLGLK_			0	0	0	Q96C19;Q9BUP0	Q96C19	Q96C19	EFHD2;EFHD1	EF-hand domain-containing protein D2;EF-hand domain-containing protein D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.835123	1133.65569	2.3301	0.0013231	-0.18183	-0.00010325	2.1482	0.0012198	567.835135532053	6.0106	0.18627	6.0106	5.9396	6.1259	0	576	34	0.938871150116794	0.0222746380512064	0.938871150116794	380.625351374053	0	9.03030403470763						384	22	4	NaN	NaN	NaN	0.00049419	1	7641	87.895	66.807	1	172630			11634	2488	9803	10057	11634	11634		
LGAQFLK	7	Unmodified	_LGAQFLK_			0	0	0	A6NHS7	A6NHS7	A6NHS7	MANSC4	MANSC domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	388.736889	775.459225	-1.5192	-0.00059057	-0.21404	-8.3204E-05	-1.7332	-0.00067377	388.73679775306	6.8619	0.10639	6.8619	6.8175	6.9239	0	858	22	0.747263789720611	0.0143611255785926	0.747263789720611	304.621641761839	0	5.85430434536971						115	13	2	NaN	NaN	NaN	0.020912	1	795	60.001	36.692	1	28021			11635	17	9804	10058	11635	11635		
LGAQLADLHLDNK	13	Unmodified	_LGAQLADLHLDNK_			0	0	0	Q9HA64	Q9HA64	Q9HA64	FN3KRP	Ketosamine-3-kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.924536	1406.75178	-1.0519	-0.00049432	-1.6187	-0.00076068	-2.6707	-0.001255	469.924194831194	9.8686	0.088665	9.8686	9.842	9.9307	0	816	28	0.775960037304758	0.0184308879834895	0.775960037304758	470.764369049043	0	11.1817683069074						186	11	3	NaN	NaN	NaN	0.0040493	1	15680	44.57	35.593	1	55823			11636	2942	9805	10059	11636	11636		
LGAVDESLSEETQK	14	Unmodified	_LGAVDESLSEETQK_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.370118	1504.72568	1.8589	0.0014004	0.47888	0.00036078	2.3378	0.0017612	753.370333002406	7.0481	0.23949	7.0481	6.9683	7.2077	0	417	58	1.04580932352505	0.0382093306970261	1.04580932352505	422.720222090303	0	15.4443610272344						626	28	4	NaN	NaN	NaN	1.3281E-06	1	18652	105.94	91.488	1	257520			11637	2549	9806	10060	11637	11637		
LGAVFNQVAFPLQYTPR	17	Unmodified	_LGAVFNQVAFPLQYTPR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.02016	1920.02577	0.93515	0.0008987	-0.15616	-0.00015007	0.779	0.00074863	961.020201260206	17.202	0.12413	17.202	17.131	17.255	0	219	31	1.17788915118882	0.0199213775268092	1.17788915118882	475.167618812121	0	8.03640437074864						304	15	4	NaN	NaN	NaN	2.6699E-05	1	30070	90.156	87.071	1	106830			11638	1841	9807	10061	11638	11638		
LGAVGGSGFK	10	Unmodified	_LGAVGGSGFK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.747985	891.481417	-0.39214	-0.00017519	-0.70543	-0.00031515	-1.0976	-0.00049034	446.747640597754	5.1504	0.19509	5.1504	5.0795	5.2745	0	795	43	0.790287188799094	0.0286523132679529	0.790287188799094	321.431843639546	0	11.65369502225						287	23	2	NaN	NaN	NaN	0.037768	1	2193	36.24	1.4595	1	74625			11639	408	9808	10062	11639	11639		
LGAVYDVSHYNALLK	15	Unmodified	_LGAVYDVSHYNALLK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.966512	1661.87771	-0.018242	-1.0124E-05	-0.43214	-0.00023983	-0.45039	-0.00024995	554.966086838472	12.307	0.16846	12.307	12.263	12.431	0	678	67	0.869855008346864	0.0447815756398717	0.869855008346864	526.940766371839	0	27.1277828610292						738	20	5	NaN	NaN	NaN	0.00013213	1	23399	88.734	72.446	1	479060			11640	1055	9809	10063	11640	11640		
LGAVYDVSHYNALLK	15	Unmodified	_LGAVYDVSHYNALLK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.94613	1661.87771	2.4185	0.0020121	1.2771	0.0010625	3.6957	0.0030746	831.947076063438	12.307	0.1596	12.307	12.263	12.423	0	255	58	1.15396378101328	0.0379209212295002	1.15396378101328	466.034446604961	0	15.3145669133762						648	19	5	NaN	NaN	NaN	5.6286E-12	1	23401	190.68	160.33	1	336480			11641	1055	9809	10063	11641	11641		
LGCEVLGVSVDSQFTHLAWINTPR	24	Unmodified	_LGCEVLGVSVDSQFTHLAWINTPR_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	900.458517	2698.35372	0.85146	0.0007667	-0.43642	-0.00039298	0.41504	0.00037373	900.792899474699	17.903	0.20392	17.903	17.849	18.053	0	435	97	1.03374239103424	0.0644459702806058	1.03374239103424	624.229361087372	0	38.9159496619559						1351	24	5	NaN	NaN	NaN	1.8201E-06	1	37596	77.347	68.935	1	377100			11642	936	9810	10064	11642	11642		
LGCFNLTIK	9	Unmodified	_LGCFNLTIK_			0	0	0	Q13547	Q13547	Q13547	HDAC1	Histone deacetylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.291702	1064.56885	-0.78445	-0.00041834	1.6844	0.00089825	0.8999	0.00047991	533.291354565845	11.926	0.21283	11.926	11.855	12.068	0	663	43	0.880024865079826	0.0284657258071274	0.880024865079826	357.04666842673	0	11.5492106724299						287	25	3	NaN	NaN	NaN	0.046241	1	5834	42.075	24.679	1	120640			11643	1682	9811	10065	11643	11643		
LGCFNLTVK	9	Unmodified	_LGCFNLTVK_			0	0	0	Q92769	Q92769	Q92769	HDAC2	Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.283877	1050.5532	0.48809	0.00025688	-0.25434	-0.00013386	0.23375	0.00012302	526.284333591741	10.534	0.2217	10.534	10.436	10.658	0	672	46	0.873923798053065	0.0305053430673474	0.873923798053065	354.631742027667	0	12.3788400970723						407	25	3	NaN	NaN	NaN	0.071673	1	5485	34.781	17.311	1	187270			11644	2431	9812	10066	11644	11644		
LGCPGFTLPEVK	12	Unmodified	_LGCPGFTLPEVK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.347206	1316.67986	1.9932	0.0013142	-0.088455	-5.8323E-05	1.9047	0.0012559	659.347657712093	12.928	0.23942	12.928	12.804	13.043	0	474	34	1.00756305028564	0.0221731807232346	1.00756305028564	407.79060301176	0	8.97414284421529						567	28	3	NaN	NaN	NaN	0.0042738	1	12881	51.531	46.035	1	153420			11645	1108	9813	10067	11645	11645		
LGDAVEQGVINNTVLGYFIGR	21	Unmodified	_LGDAVEQGVINNTVLGYFIGR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.730454	2234.16953	-0.35904	-0.00026775	-0.66831	-0.00049838	-1.0273	-0.00076613	746.064153258034	19.942	0.035486	19.942	19.933	19.969	0	594	28	0.926715457081489	0.0182398570098127	0.926715457081489	560.196263712658	0	11.0259299868909						117	5	4	NaN	NaN	NaN	0.00087132	1	35029	45.17	41.917	1	38442			11646	1035	9814	10068	11646	11646		
LGDAVEQGVINNTVLGYFIGR	21	Unmodified	_LGDAVEQGVINNTVLGYFIGR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.730454	2234.16953	0.27212	0.00020293	-0.34515	-0.00025739	-0.07303	-5.446E-05	746.064804043064	19.942	0.044352	19.942	19.933	19.978	0	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	611.504865476771	0	14.6190905571494						131	6	5	NaN	NaN	NaN	0.065797	1	35031	23.432	21.808	1	51545			11647	1035	9814	10068	11647	11647		
LGDAVEQGVINNTVLGYFIGR	21	Unmodified	_LGDAVEQGVINNTVLGYFIGR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1118.09204	2234.16953	0.6066	0.00067824	-0.37628	-0.00042071	0.23033	0.00025753	1118.59320927809	19.942	0.044352	19.942	19.933	19.978	0	84	76	1.26725910986255	0.0495139759343437	1.26725910986255	510.703898090619	0	19.9540727881428						349	6	5	NaN	NaN	NaN	5.1118E-11	1	35033	96.78	96.345	1	117660			11648	1035	9814	10068	11648	11648		
LGDAVIWGTGQLFQAQQDLLHR	22	Unmodified	_LGDAVIWGTGQLFQAQQDLLHR_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.76779	2465.28154	0.94524	0.00077771	0.037685	3.1006E-05	0.98292	0.00080872	823.102543963898	18.568	0.079806	18.568	18.532	18.612	0	414	28	1.04781950764076	0.0180916587638704	1.04781950764076	633.036412862485	0	10.9300110210768						213	10	5	NaN	NaN	NaN	4.9211E-06	1	36655	65.724	59.619	1	47750			11649	1593	9815	10069	11649	11649		
LGDEDEEIDGDTNK	14	Unmodified	_LGDEDEEIDGDTNK_			0	0	0	P09884	P09884	P09884	POLA1	DNA polymerase alpha catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.328647	1548.64274	2.2941	0.0017787	0.49743	0.00038567	2.7915	0.0021644	775.329278441046	4.911	0.097502	4.911	4.8844	4.9819	0	459	25	1.01763759082241	0.0161136996889994	1.01763759082241	411.22676535045	0	6.51153677959229						141	12	3	NaN	NaN	NaN	0.0034374	1	19987	65.879	57.073	1	37249			11650	612	9816	10070	11650	11650		
LGDFPYVSILDPR	13	Unmodified	_LGDFPYVSILDPR_			0	0	0	O94888	O94888	O94888	UBXN7	UBX domain-containing protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.395741	1490.77693	1.0399	0.00077621	-0.024575	-1.8342E-05	1.0154	0.00075787	746.39548883323	17.814	0.23939	17.814	17.663	17.903	0	393	55	1.0618830335572	0.0361708486763277	1.0618830335572	429.253881498451	0	14.6216454173814						521	28	3	NaN	NaN	NaN	0.00027952	1	18265	83.775	77.084	1	102830			11651	392	9817	10071	11651	11651		
LGDHQSPATPAFK	13	Unmodified	_LGDHQSPATPAFK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.901731	1367.68336	-0.52313	-0.00023902	1.1294	0.00051603	0.60629	0.00027701	456.902242023158	4.7958	0.13298	4.7958	4.7337	4.8667	0	855	31	0.749315378969369	0.0205144650088798	0.749315378969369	454.725615374362	0	12.4493010380613						297	16	3	NaN	NaN	NaN	0.00025623	1	14427	79.889	55.068	1	75861			11652	2355	9818	10072	11652	11652		
LGDLLISQFSGPSAEQMCK	19	Unmodified	_LGDLLISQFSGPSAEQMCK_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.00573	2079.99691	1.0012	0.0010423	-3.7327	-0.0038857	-2.7314	-0.0028435	1040.99918821943	15.331	0.12414	15.331	15.251	15.375	0	165	46	1.21370334790578	0.0298144541275307	1.21370334790578	489.34500886019	0	12.0206921603802						215	15	3	NaN	NaN	NaN	0.025209	1	33023	38.839	37.251	1	43732			11653	2449	9819	10073	11653	11653		
LGDLYEEEMR	10	Unmodified	_LGDLYEEEMR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.787178	1253.5598	1.7776	0.001116	1.8366	0.001153	3.6142	0.002269	627.788674451097	8.7511	0.31071	8.7511	8.6712	8.9819	0	561	67	0.948993180460448	0.0445092174223279	0.948993180460448	384.286405685417	0	18.0236144318743						1653	36	6	NaN	NaN	NaN	3.2497E-07	1	11013	123.5	114.74	1	2270700			11654	588	9820	10074	11654	11654		
LGDPEELMFQYFK	13	Unmodified	_LGDPEELMFQYFK_			0	0	0	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.886892	1615.75923	1.1916	0.00096388	-1.5368	-0.0012431	-0.3452	-0.00027922	809.387462227345	18.727	0.09752	18.727	18.692	18.789	0	393	34	1.0618830335572	0.0220906848842135	1.0618830335572	428.948351375486	0	8.92354672067404						274	12	4	NaN	NaN	NaN	0.00025016	1	22066	72.922	63.66	1	54805			11655	1785	9821	10075	11655	11655		
LGDPLEAFPVFK	12	Unmodified	_LGDPLEAFPVFK_			0	0	0	Q86UY6	Q86UY6	Q86UY6	NAA40	N-alpha-acetyltransferase 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.863546	1331.71254	0.56551	0.00037712	0.33977	0.00022658	0.90527	0.00060369	666.863045537048	17.805	0.1596	17.805	17.734	17.894	0	507	40	0.985374541851584	0.0262409175570258	0.985374541851584	398.763500300931	0	10.6192312584872						409	19	4	NaN	NaN	NaN	0.0013708	1	13357	72.922	64.921	1	84974			11656	2169	9822	10076	11656	11656		
LGDTALHAAAWK	12	Unmodified	_LGDTALHAAAWK_			0	0	0	Q92882	Q92882	Q92882	OSTF1	Osteoclast-stimulating factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.335487	1252.65642	1.6319	0.0010237	-3.0796	-0.0019319	-1.4477	-0.00090819	627.333746048147	7.2255	0.13301	7.2255	7.1545	7.2875	8.8818E-16	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	390.023083712368	0	8.18694521992148						229	16	3	NaN	NaN	NaN	3.2216E-05	1	10993	111.61	101.36	1	76947			11657	2438	9823	10077	11657	11657		
LGDTALHAAAWK	12	Unmodified	_LGDTALHAAAWK_			0	0	0	Q92882	Q92882	Q92882	OSTF1	Osteoclast-stimulating factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.559417	1252.65642	-1.3151	-0.00055046	0.66226	0.00027719	-0.65288	-0.00027327	418.559862991673	7.2166	0.062061	7.2166	7.1989	7.261	0	768	22	0.808687310729125	0.0143012525920645	0.808687310729125	491.205737452849	0	8.68674113317144						117	8	3	NaN	NaN	NaN	0.071155	1	10994	13.274	9.9287	1	27927			11658	2438	9823	10077	11658	11658		
LGDVGMAELCPGLLHPSSR	19	Unmodified	_LGDVGMAELCPGLLHPSSR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.336282	2007.98702	0.86457	0.00057955	0.18369	0.00012314	1.0483	0.00070269	670.67098995326	13.283	0.15076	13.283	13.23	13.38	0	567	70	0.944945209309785	0.0466000786079988	0.944945209309785	571.613203353661	0	28.1891690091821						709	18	5	NaN	NaN	NaN	2.6226E-05	1	31774	99.668	90.512	1	270380			11659	678	9824	10078	11659	11659		
LGDVGMAELCPGLLHPSSR	19	Unmodified	_LGDVGMAELCPGLLHPSSR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.00078	2007.98702	0.99498	0.00099996	2.3146	0.0023262	3.3096	0.0033261	1005.00116138631	13.292	0.12414	13.292	13.247	13.371	0	120	61	1.2434810169581	0.0396736385378524	1.2434810169581	501.470065387216	0	15.9995543481594						380	15	4	NaN	NaN	NaN	2.8135E-05	1	31775	56.473	48.474	1	77319			11660	678	9824	10078	11660	11660		
LGDVYVNDAFGTAHR	15	Unmodified	_LGDVYVNDAFGTAHR_			0	0	0	P00558;P07205	P00558	P00558	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.602233	1633.78487	0.40902	0.00022316	0.19087	0.00010414	0.5999	0.00032731	545.602370932465	9.6204	0.35468	9.6204	9.5494	9.9041	0	711	55	0.847456455381371	0.0366801996858289	0.847456455381371	513.445063843311	0	22.2232863410079						1265	41	6	NaN	NaN	NaN	1.5707E-08	1	22590	185.18	164.03	1	1947800			11661	484	9825	10079	11661	11661		
LGDVYVNDAFGTAHR	15	Unmodified	_LGDVYVNDAFGTAHR_			0	0	0	P00558;P07205	P00558	P00558	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.899711	1633.78487	2.8263	0.0023117	1.0236	0.00083721	3.8499	0.0031489	817.900299120648	9.6204	0.16848	9.6204	9.5583	9.7268	0	330	73	1.10399226369747	0.0480751360570641	1.10399226369747	445.916567827849	0	19.4181611351377						802	20	5	NaN	NaN	NaN	7.0623E-12	1	22591	187.51	162.69	1	769950			11662	484	9825	10079	11662	11662		
LGEDESLLMK	10	Unmodified	_LGEDESLLMK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.789189	1133.56383	0.50038	0.00028411	9.4419	0.005361	9.9423	0.0056451	567.793973563235	9.31	0.38132	9.31	9.2125	9.5938	0	621	52	0.908462957275599	0.0344865119804736	0.908462957275599	368.297959657977	0	13.9811006011945						451	44	3	NaN	NaN	NaN	0.0319	1	7634	37.591	0	1	153790			11663	1962	9826	10080	11663	11663		
LGEDIVITAHVLK	13	Unmodified	_LGEDIVITAHVLK_			0	0	0	Q9NPJ3	Q9NPJ3	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.413934	1406.81332	1.6445	0.0011584	0.8641	0.00060868	2.5086	0.0017671	704.414447486546	11.598	0.18629	11.598	11.553	11.74	0	357	28	1.08596037261705	0.0180443182324475	1.08596037261705	439.227757397641	0	7.29820869237386						351	22	4	NaN	NaN	NaN	0.00012575	1	15682	94.66	85.683	1	99143			11664	2991	9827	10081	11664	11664		
LGEDMLCLLHGR	12	Unmodified	_LGEDMLCLLHGR_			0	0	0	Q8IWB1	Q8IWB1	Q8IWB1	ITPRIP	Inositol 1,4,5-trisphosphate receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.90409	1412.69044	-2.0182	-0.00095241	-2.8563	-0.0013479	-4.8746	-0.0023003	471.902786645813	13.584	0.06208	13.584	13.549	13.611	0	786	19	0.796423123669906	0.0122693083129709	0.796423123669906	483.159304491862	0	7.44331787326178						81	8	3	NaN	NaN	NaN	0.0044855	1	15844	32.14	28.532	1	13601			11665	2201	9828	10082	11665	11665		
LGEEAFFYHSNCK	13	Unmodified	_LGEEAFFYHSNCK_			0	0	0	Q9P016	Q9P016	Q9P016	THYN1	Thymocyte nuclear protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.573286	1600.69803	-0.6471	-0.00034592	0.16189	8.6542E-05	-0.48521	-0.00025938	534.573273908626	8.6534	0.1242	8.6534	8.618	8.7422	0	753	40	0.81889964927511	0.0265446998138166	0.81889964927511	496.229577933748	0	16.0853227824048						333	15	4	NaN	NaN	NaN	0.015036	1	21595	55.754	48.614	1	85338			11666	3141	9829	10083	11666	11666		
LGEFFQTK	8	Unmodified	_LGEFFQTK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.255643	968.496732	-0.78622	-0.00038152	-1.2689	-0.00061575	-2.0551	-0.00099726	485.25531360123	9.2923	0.26611	9.2923	9.2213	9.4874	0	735	34	0.831145085810763	0.0224421675628655	0.831145085810763	337.641896763547	0	9.11683910880578						475	31	4	NaN	NaN	NaN	0.00060154	1	3596	72.492	48.917	1	176220			11667	1796	9830	10084	11667	11667		
LGEGEGSMTK	10	Unmodified	_LGEGEGSMTK_			0	0	0	Q9UNH7;Q9Y5X3	Q9UNH7;Q9Y5X3	Q9UNH7	SNX6;SNX5	Sorting nexin-6;Sorting nexin-6, N-terminally processed;Sorting nexin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.736957	1007.45936	0.20014	0.00010102	6.2982	0.0031789	6.4983	0.00328	504.740494674668	2.8627	0.1685	2.8627	2.8094	2.9779	0	741	49	0.827064408645228	0.032640889258064	0.827064408645228	335.802184039709	0	13.2527549091499						286	20	2	NaN	NaN	NaN	0.05389	1	4451	32.549	20.482	1	92047			11668	3296;3445	9831	10085	11668	11668		
LGEHNIDVLEGNEQFINAAK	20	Unmodified	_LGEHNIDVLEGNEQFINAAK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.706197	2210.09676	0.011182	8.2492E-06	0.68425	0.00050477	0.69543	0.00051302	738.041188881754	11.899	0.17736	11.899	11.846	12.024	0	600	100	0.922661313351899	0.0668239917030826	0.922661313351899	557.783055359136	0	40.3975865510503						736	21	5	NaN	NaN	NaN	8.7864E-08	1	34787	118.87	99.673	1	243800		+	11669	24	9832	10086	11669	11669		
LGEHNIDVLEGNEQFINAAK	20	Unmodified	_LGEHNIDVLEGNEQFINAAK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1106.05566	2210.09676	1.4998	0.0016589	1.2694	0.0014041	2.7693	0.003063	1106.55878116377	12.44	0.28373	12.44	12.396	12.68	0	66	142	1.27913350869533	0.0931757634466246	1.27913350869533	515.523962547548	0	37.552248032647						3716	33	7	NaN	NaN	NaN	1.1175E-72	1	34789	248.41	227.8	1	4261300		+	11670	24	9832	10086	11670	11670		
LGEHNIDVLEGNEQFINAAK	20	Unmodified	_LGEHNIDVLEGNEQFINAAK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.706197	2210.09676	1.7139	0.0012643	1.3327	0.00098311	3.0465	0.0022474	738.04165192852	12.44	0.49654	12.44	12.361	12.857	0	465	304	1.01360860968299	0.204354294147101	1.01360860968299	612.764073636332	0	123.539765300354						9800	57	7	NaN	NaN	NaN	1.4706E-37	1	34790	310.9	285.31	1	16419000		+	11671	24	9832	10086	11671	11671		
LGEINVIGEPFLNVNCEHIK	20	Unmodified	_LGEINVIGEPFLNVNCEHIK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	765.731577	2294.1729	1.3687	0.001048	-0.073821	-5.6527E-05	1.2948	0.00099151	766.066096821128	15.304	0.16844	15.304	15.242	15.411	0	450	61	1.02367897599655	0.040289830422827	1.02367897599655	618.710416949682	0	24.351128004238						1110	20	6	NaN	NaN	NaN	2.4364E-22	1	35596	177.62	134.68	1	464050			11672	950	9833	10087	11672	11672		
LGEIVTTIPTIGFNVETVEYK	21	Unmodified	_LGEIVTTIPTIGFNVETVEYK_			0	0	0	P61204;P84077;P18085;P84085	P61204;P18085;P84085	P61204	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.085903	2322.23588	0.66583	0.00051608	-0.94583	-0.0007331	-0.28001	-0.00021703	775.418983572565	18.541	0.062052	18.541	18.515	18.577	0	477	97	1.0055473068722	0.0645261571026412	1.0055473068722	607.707474380555	0	38.9967012952408						480	8	4	NaN	NaN	NaN	0.010849	1	35836	32.6	30.629	1	90569			11673	1334;751;1483	9834	10088	11673	11673		
LGEIVTTIPTIGFNVETVEYK	21	Unmodified	_LGEIVTTIPTIGFNVETVEYK_			0	0	0	P61204;P84077;P18085;P84085	P61204;P18085;P84085	P61204	ARF3;ARF1;ARF4;ARF5	ADP-ribosylation factor 3;ADP-ribosylation factor 1;ADP-ribosylation factor 4;ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1162.12522	2322.23588	0.47314	0.00054985	0.035118	4.0812E-05	0.50826	0.00059066	1162.62699826574	18.55	0.14187	18.55	18.497	18.639	0	63	64	1.28111162701928	0.0415632610089882	1.28111162701928	516.165415328791	0	16.746017621461						836	17	6	NaN	NaN	NaN	3.3798E-11	1	35837	164.22	145.21	1	413870			11674	1334;751;1483	9834	10088	11674	11674		
LGELAGESVENQEVQSK	17	Unmodified	_LGELAGESVENQEVQSK_			0	0	0	Q96T58	Q96T58	Q96T58	SPEN	Msx2-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.949795	1815.88504	2.1778	0.0019795	-1.8966	-0.0017239	0.28118	0.00025558	909.449592700993	7.3319	0.044342	7.3319	7.3142	7.3585	0	309	25	1.11800162319566	0.016005187067117	1.11800162319566	451.194172357842	0	6.4592456597145						102	6	3	NaN	NaN	NaN	6.1937E-05	1	27629	77.696	74.191	1	16593			11675	2630	9835	10089	11675	11675		
LGELPSWILMR	11	Unmodified	_LGELPSWILMR_			0	0	0	P56134	P56134	P56134	ATP5J2	ATP synthase subunit f, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.865566	1313.71658	1.0192	0.00067046	-1.3477	-0.00088658	-0.32852	-0.00021612	657.864993019637	17.805	0.2305	17.805	17.752	17.982	0	525	52	0.973257487423603	0.0343530427274077	0.973257487423603	393.915357912425	0	13.9040195387245						905	27	5	NaN	NaN	NaN	0.0016517	1	12776	83.358	38.538	1	674770			11676	1281	9836	10090	11676	11676		
LGELQGNHFTVVLR	14	Unmodified	_LGELQGNHFTVVLR_			0	0	0	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.294852	1581.86273	0.33701	0.00017804	-1.3067	-0.00069032	-0.96969	-0.00051228	528.293590791781	11.066	0.12413	11.066	11.021	11.146	0	678	37	0.869855008346864	0.0244195217531761	0.869855008346864	527.160832948199	0	14.7990358209993						293	15	3	NaN	NaN	NaN	0.019053	1	21032	48.701	41.561	1	112450			11677	2601	9837	10091	11677	11677		
LGELTGTVK	9	Unmodified	_LGELTGTVK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.26875	916.522947	-1.3163	-0.00060452	-0.17953	-8.2454E-05	-1.4958	-0.00068698	459.268584975122	5.5849	0.15966	5.5849	5.5494	5.7091	0	792	28	0.792332785124922	0.0184103687161689	0.792332785124922	322.130274366289	0	7.48490689400035						197	19	3	NaN	NaN	NaN	0.011712	1	2643	48.157	9.8354	1	54199			11678	211	9838	10092	11678	11678		
LGEMWNNLNDSEK	13	Unmodified	_LGEMWNNLNDSEK_			0	0	0	O15347	O15347	O15347	HMGB3	High mobility group protein B3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.351205	1548.68786	1.8354	0.0014231	0.9567	0.00074178	2.7921	0.0021648	775.352032672875	10.277	0.18619	10.277	10.214	10.401	0	384	43	1.06790610341098	0.028105727549725	1.06790610341098	431.540129230065	0	11.3575053651001						605	22	5	NaN	NaN	NaN	6.7612E-05	1	19989	108.2	90.465	1	230600			11679	165	9839	10093	11679	11679		
LGEMWNNTAADDK	13	Unmodified	_LGEMWNNTAADDK_			0	0	0	P09429;B2RPK0	P09429	P09429	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.824823	1463.63509	2.4249	0.0017771	1.4253	0.0010445	3.8502	0.0028215	732.826116789247	7.8197	0.41694	7.8197	7.7044	8.1213	0	471	58	1.00957851518677	0.0382938495713495	1.00957851518677	408.17998241252	0	15.4824836398677						1524	48	6	NaN	NaN	NaN	1.2022E-07	1	17372	154.94	127.35	1	1835000			11680	601	9840	10094	11680	11680		
LGEMWNNTAADDK	13	Oxidation (M)	_LGEM(Oxidation (M))WNNTAADDK_	LGEM(1)WNNTAADDK	LGEM(150)WNNTAADDK	0	1	0	P09429;B2RPK0	P09429	P09429	HMGB1;HMGB1P1	High mobility group protein B1;Putative high mobility group protein B1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.82228	1479.63001	2.1707	0.0016081	-0.064718	-4.7944E-05	2.1059	0.0015601	740.822529075596	5.78	0.30152	5.78	5.7179	6.0195	0	471	46	1.00957851518677	0.0302319815976242	1.00957851518677	408.138664833801	0	12.2217741551796						791	35	5	NaN	NaN	NaN	7.0204E-07	1	17884	145.95	119.37	1	353660			11681	601	9840	10095	11681	11681	164	
LGENMILK	8	Unmodified	_LGENMILK_			0	0	0	P43897	P43897	P43897	TSFM	Elongation factor Ts, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.259871	916.505189	-0.91988	-0.00042246	-1.647	-0.0007564	-2.5669	-0.0011789	459.259103913674	8.4584	0.16849	8.4584	8.3963	8.5648	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	334.591343725046	0	8.29865083830271						337	20	3	NaN	NaN	NaN	0.051642	1	2642	43.734	15.998	1	126150			11682	1069	9841	10096	11682	11682		
LGEQVFGTTGK	11	Unmodified	_LGEQVFGTTGK_			0	0	0	Q9H2H9	Q9H2H9	Q9H2H9	SLC38A1	Sodium-coupled neutral amino acid transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.800946	1135.58734	1.221	0.00069451	-2.748	-0.0015631	-1.527	-0.00086854	568.79988093936	7.3408	0.21281	7.3408	7.2698	7.4826	0	642	34	0.894250814548268	0.0223395647977513	0.894250814548268	362.528536866618	0	9.05644099911376						240	25	3	NaN	NaN	NaN	4.083E-05	1	7688	71.066	61.673	1	72363			11683	2868	9842	10097	11683	11683		
LGESVQDLSSFDEYSSELK	19	Unmodified	_LGESVQDLSSFDEYSSELK_			0	0	0	Q9UI12	Q9UI12	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.99714	2131.97972	0.90239	0.00096284	-3.1742	-0.0033869	-2.2719	-0.0024241	1067.49493214032	14.701	0.11529	14.701	14.666	14.781	0	162	61	1.21569043230068	0.0397444329160825	1.21569043230068	490.066902269756	0	16.0217030620137						357	14	4	NaN	NaN	NaN	3.9881E-07	1	33763	91.457	89.216	1	63908			11684	3231	9843	10098	11684	11684		
LGEVVNTHGPVEPDK	15	Unmodified	_LGEVVNTHGPVEPDK_			0	0	0	P30419	P30419	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.909744	1589.80494	3.4037	0.002709	-2.7232	-0.0021674	0.68044	0.00054157	795.907487401243	5.6825	0.13308	5.6825	5.6381	5.7711	0	351	67	1.08996939197032	0.0441174739341266	1.08996939197032	440.354951785964	0	17.8237556488282						654	16	4	NaN	NaN	NaN	4.8133E-06	1	21276	97.084	78.576	1	229870			11685	909	9844	10099	11685	11685		
LGEVVNTHGPVEPDK	15	Unmodified	_LGEVVNTHGPVEPDK_			0	0	0	P30419	P30419	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.942255	1589.80494	1.0403	0.00055234	1.4418	0.00076549	2.4821	0.0013178	531.277529304167	5.6913	0.25718	5.6913	5.5849	5.8421	0	711	85	0.847456455381371	0.0569947532381933	0.847456455381371	513.564319170418	0	34.5392042944394						504	30	2	NaN	NaN	NaN	9.8726E-05	1	21277	71.219	59.864	1	163210			11686	909	9844	10099	11686	11686		
LGEWVGLCK	9	Unmodified	_LGEWVGLCK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.276052	1060.53755	0.70144	0.00037266	-0.93726	-0.00049794	-0.23582	-0.00012529	531.275773439669	10.543	0.42564	10.543	10.401	10.826	0	696	106	0.857641857947968	0.0711891000016533	0.857641857947968	347.98226347782	0	28.8844859004387						1611	49	5	NaN	NaN	NaN	0.00033709	1	5739	77.072	40.502	1	1652600			11687	837	9845	10100	11687	11687		
LGEYEDVSR	9	Unmodified	_LGEYEDVSR_			0	0	0	Q99426	Q99426	Q99426	TBCB	Tubulin-folding cofactor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.253828	1066.4931	1.1476	0.0006131	2.8311	0.0015125	3.9787	0.0021256	534.255230623111	4.7248	0.2926	4.7248	4.6627	4.9553	0	681	49	0.867820189810857	0.0325548466595607	0.867820189810857	352.086827180968	0	13.2079580589452						598	34	4	NaN	NaN	NaN	0.0014228	1	5873	79.059	72.296	1	157670			11688	2637	9846	10101	11688	11688		
LGEYMEK	7	Unmodified	_LGEYMEK_			0	0	0	Q96TA1	Q96TA1	Q96TA1	FAM129B	Niban-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.207304	868.400055	-1.6161	-0.00070333	1.5058	0.00065535	-0.11023	-4.7974E-05	435.207843253984	4.1751	0.26604	4.1751	4.1307	4.3968	0	801	31	0.78619514174348	0.0204602376573505	0.78619514174348	319.896343025864	0	8.32510258141747						295	31	3	NaN	NaN	NaN	0.030709	1	1829	53.679	42.03	1	67017			11689	2633	9847	10102	11689	11689		
LGFAGLVQEISFGTTK	16	Unmodified	_LGFAGLVQEISFGTTK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.453788	1666.89302	1.2766	0.0010653	-0.029148	-2.4323E-05	1.2475	0.001041	834.453522823315	18.807	0.070955	18.807	18.781	18.851	0	246	43	1.1599488233373	0.0279282839901285	1.1599488233373	468.439888476346	0	11.2787064174357						234	9	4	NaN	NaN	NaN	3.0838E-06	1	23554	87.573	74.991	1	60182			11690	1113	9848	10103	11690	11690		
LGFAGLVQEISFGTTK	16	Unmodified	_LGFAGLVQEISFGTTK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.453788	1666.89302	2.0923	0.0017459	-0.11373	-9.4905E-05	1.9786	0.001651	834.454402741691	18.816	0.23052	18.816	18.763	18.993	0	351	61	1.08996939197032	0.0400791660081454	1.08996939197032	440.179023850964	0	16.1857831056477						967	27	6	NaN	NaN	NaN	3.8174E-25	1	23555	193.34	167.72	1	862280			11691	1113	9848	10103	11691	11691		
LGFATSSDVIEMK	13	Unmodified	_LGFATSSDVIEMK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.352685	1396.69082	1.3494	0.00094369	0.75869	0.00053059	2.1081	0.0014743	699.353355151202	12.396	0.15072	12.396	12.343	12.493	1.7764E-15	429	37	1.03776581230406	0.0241405316442127	1.03776581230406	419.764586631181	0	9.764573246243						369	18	4	NaN	NaN	NaN	1.8023E-05	1	15340	99.174	75.338	1	119870			11692	1047	9849	10104	11692	11692		
LGFDVVFNYK	10	Unmodified	_LGFDVVFNYK_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.316232	1200.61791	0.42431	0.00025514	0.26514	0.00015943	0.68945	0.00041458	601.316517404135	15.597	0.14181	15.597	15.553	15.695	0	549	37	0.957085760909907	0.0242710246218105	0.957085760909907	387.749560799319	0	9.83305730962849						284	17	3	NaN	NaN	NaN	0.0028752	1	9482	69.716	65.513	1	93482			11693	1778	9850	10105	11693	11693		
LGFEGGQTPFYIR	13	Unmodified	_LGFEGGQTPFYIR_			0	0	0	Q9P015	Q9P015	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.880259	1483.74596	1.1364	0.00084419	1.5561	0.001156	2.6925	0.0020002	743.38316589489	14.169	0.17734	14.169	14.125	14.302	0	438	58	1.03173026378327	0.0382251566582583	1.03173026378327	417.083145494688	0	15.4527487810542						320	21	2	NaN	NaN	NaN	0.0072588	1	18027	54.584	46.11	1	119120			11694	3140	9851	10106	11694	11694		
LGFGTGVNVYLMK	13	Unmodified	_LGFGTGVNVYLMK_			0	0	0	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.87613	1397.73771	0.7962	0.00055724	1.3292	0.00093029	2.1254	0.0014875	699.877231583119	14.888	0.17733	14.888	14.852	15.03	0	432	34	1.035754240522	0.022130347528504	1.035754240522	418.94784996734	0	8.95141062750963						408	21	4	NaN	NaN	NaN	0.0067868	1	15382	50.297	37.701	1	101460			11695	2574	9852	10107	11695	11695		
LGFHLPLEVAYQR	13	Unmodified	_LGFHLPLEVAYQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.952426	1541.83545	-0.63654	-0.00032779	-1.6314	-0.00084007	-2.2679	-0.0011679	514.951549149486	14.427	0.22167	14.427	14.329	14.551	0	750	55	0.820941264895493	0.036731215006067	0.820941264895493	497.629424737256	0	22.265336358377						836	26	5	NaN	NaN	NaN	9.0007E-05	1	19788	114.39	105.13	1	468560			11696	1816	9853	10108	11696	11696		
LGFHLPLEVAYQR	13	Unmodified	_LGFHLPLEVAYQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.925	1541.83545	2.0057	0.0015483	0.87464	0.00067515	2.8804	0.0022234	771.925833755964	14.427	0.26601	14.427	14.267	14.533	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	437.232575845679	0	11.3469965739419						495	31	4	NaN	NaN	NaN	0.0019281	1	19791	40.533	31.271	1	177130			11697	1816	9853	10108	11697	11697		
LGFSEVELVQMVVDGVK	17	Unmodified	_LGFSEVELVQMVVDGVK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.997372	1847.97029	-0.27802	-0.00017154	-0.92231	-0.00056906	-1.2003	-0.0007406	617.331683929881	20.049	0.026601	20.049	20.049	20.075	0	615	25	0.912521036363781	0.0162300673431094	0.912521036363781	552.326987824834	0	9.82366855183409						76	4	5	NaN	NaN	NaN	0.027429	1	28439	29.98	22.015	1	27854			11698	668	9854	10109	11698	11698		
LGFSEVELVQMVVDGVK	17	Unmodified	_LGFSEVELVQMVVDGVK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.99242	1847.97029	1.0254	0.00094849	0.65655	0.0006073	1.6819	0.0015558	924.992840170391	20.049	0.053194	20.049	20.04	20.093	0	186	76	1.1997861197946	0.0496839626031316	1.1997861197946	484.136371634542	0	20.0484177856836						168	7	4	NaN	NaN	NaN	6.6697E-07	1	28442	98.167	90.202	1	59565			11699	668	9854	10109	11699	11699		
LGFSEVELVQMVVDGVK	17	Oxidation (M)	_LGFSEVELVQM(Oxidation (M))VVDGVK_	LGFSEVELVQM(1)VVDGVK	LGFSEVELVQM(88)VVDGVK	0	1	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.989877	1863.9652	1.0477	0.00097752	0.41064	0.00038312	1.4584	0.0013606	933.491672585611	19.481	0.062063	19.481	19.454	19.516	0	162	85	1.21569043230068	0.0556880648197788	1.21569043230068	490.52270027224	0	22.4697498660392						451	8	4	NaN	NaN	NaN	5.7023E-06	1	28787	88.42	72.132	1	99133			11700	668	9854	10110	11700	11700	202	
LGFSEYCR	8	Unmodified	_LGFSEYCR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.234384	1030.45422	0.59137	0.00030528	0.070557	3.6424E-05	0.66193	0.00034171	516.234576280885	7.261	0.15961	7.261	7.2077	7.3674	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	348.112458370055	0	9.09272125735367						314	19	4	NaN	NaN	NaN	0.0035605	1	4999	78.178	62.597	1	98134			11701	1757	9855	10111	11701	11701		
LGFVDVQNCISR	12	Unmodified	_LGFVDVQNCISR_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.356093	1406.69763	0.29867	0.00021037	5.1794	0.0036481	5.478	0.0038585	704.862967067858	11.944	0.14189	11.944	11.89	12.032	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	410.779497468277	0	8.96198304086408						257	17	3	NaN	NaN	NaN	0.06403	1	15675	22.004	8.009	1	63515			11702	1758	9856	10112	11702	11702		
LGFYEWTSR	9	Unmodified	_LGFYEWTSR_			0	0	0	P06280	P06280	P06280	GLA	Alpha-galactosidase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.782556	1157.55056	-0.069321	-4.0191E-05	3.0044	0.0017419	2.9351	0.0017017	580.287055835354	12.493	0.097497	12.493	12.458	12.556	0	618	40	0.910492137470517	0.026386663985959	0.910492137470517	369.028709007335	0	10.6946959177494						213	12	3	NaN	NaN	NaN	0.0069061	1	8263	49.96	47.593	1	75008			11703	538	9857	10113	11703	11703		
LGFYGLDESDLDK	13	Unmodified	_LGFYGLDESDLDK_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.351197	1470.68784	1.3496	0.00099375	0.077956	5.7403E-05	1.4275	0.0010512	736.351221311777	13.948	0.14185	13.948	13.903	14.045	0	423	46	1.04178812298108	0.030161093191106	1.04178812298108	421.183651985389	0	12.1938032291547						361	17	3	NaN	NaN	NaN	1.3873E-05	1	17601	101.45	90.09	1	87288			11704	1526	9858	10114	11704	11704		
LGGAGMER	8	Unmodified	_LGGAGMER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	395.697438	789.380322	-0.89513	-0.0003542	2.0385	0.00080663	1.1434	0.00045243	395.698259737531	2.6055	0.16849	2.6055	2.5611	2.7296	0	861	22	0.745211914437924	0.014365130472816	0.745211914437924	303.692246910673	0	5.85414519807421						126	20	2	NaN	NaN	NaN	0.051106	1	898	47.349	31.851	1	23897			11705	1206	9859	10115	11705	11705		
LGGDLGTYVINK	12	Unmodified	_LGGDLGTYVINK_			0	0	0	Q16595	Q16595	Q16595	FXN	Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.342978	1248.6714	1.3	0.00081295	-2.8584	-0.0017875	-1.5584	-0.00097453	625.341522098386	10.347	0.088662	10.347	10.312	10.401	0	570	25	0.942920803299286	0.016196370719784	0.942920803299286	381.843754760508	0	6.55885731600779						179	11	3	NaN	NaN	NaN	0.0002908	1	10887	83.438	58.617	1	74248			11706	1892	9860	10116	11706	11706		
LGGEAHSMVWDPSGER	16	Unmodified	_LGGEAHSMVWDPSGER_			0	0	0	Q9NRG9	Q9NRG9	Q9NRG9	AAAS	Aladin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.598382	1726.77332	-0.69767	-0.00040228	-0.12284	-7.083E-05	-0.82051	-0.00047311	576.598297919712	8.1036	0.11537	8.1036	8.0591	8.1745	0	738	40	0.829104889055312	0.0265299389954775	0.829104889055312	502.099233574755	0	16.0663170755053						274	14	3	NaN	NaN	NaN	0.00014469	1	25225	69.641	61.266	1	60073			11707	3020	9861	10117	11707	11707		
LGGHGPSFPLK	11	Unmodified	_LGGHGPSFPLK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	370.541586	1108.60293	-1.5826	-0.00058643	1.7332	0.00064222	0.15056	5.579E-05	370.542398520057	6.5604	0.11528	6.5604	6.5249	6.6402	0	801	31	0.78619514174348	0.0204602376573505	0.78619514174348	478.218491744005	0	12.4453376441934						222	14	3	NaN	NaN	NaN	0.060778	1	6959	23.053	14.29	1	64866			11708	674	9862	10118	11708	11708		
LGGIGQFLAK	10	Unmodified	_LGGIGQFLAK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.300384	1002.58622	-0.50785	-0.00025509	-0.96047	-0.00048244	-1.4683	-0.00073753	502.30012924769	12.086	0.31927	12.086	12.015	12.334	0	708	61	0.849494101904619	0.0407614442197906	0.849494101904619	344.931640957596	0	16.5509234390335						781	37	4	NaN	NaN	NaN	0.0010023	1	4362	82.716	52.155	1	605200			11709	1575	9863	10119	11709	11709		
LGGIPVGVVAVETR	14	Unmodified	_LGGIPVGVVAVETR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.906276	1365.798	2.0732	0.0014179	-3.5345	-0.0024172	-1.4613	-0.00099936	683.903602067239	12.893	0.088701	12.893	12.857	12.946	0	489	25	0.997481546940468	0.0161382113226246	0.997481546940468	403.55952448845	0	6.52917230141122						190	11	3	NaN	NaN	NaN	0.0099475	1	14379	52.837	33.514	1	76115			11710	1625	9864	10120	11710	11710		
LGGLTQAPGNPVLAVQINQDK	21	Unmodified	_LGGLTQAPGNPVLAVQINQDK_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.08676	2132.15897	1.6729	0.0017851	0.040809	4.3547E-05	1.7137	0.0018286	1067.58821733249	13.487	0.11526	13.487	13.434	13.549	0	153	85	1.22165005014568	0.055596454182947	1.22165005014568	492.46905429226	0	22.4119282033459						770	14	4	NaN	NaN	NaN	0.0012224	1	33773	53.193	46.671	1	206730			11711	850	9865	10121	11711	11711		
LGGLWGLLK	9	Unmodified	_LGGLWGLLK_			0	0	0	Q03519	Q03519	Q03519	TAP2	Antigen peptide transporter 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.80002	955.585488	-2.5069	-0.0012003	0.31444	0.00015055	-2.1925	-0.0010498	478.799971484378	16.714	0.10642	16.714	16.67	16.777	0	756	25	0.816857749704129	0.0163363337922245	0.816857749704129	331.900599272276	0	6.63767831977498						143	13	2	NaN	NaN	NaN	0.00016157	1	3352	63.301	36.845	1	37115			11712	1539	9866	10122	11712	11712		
LGGNVVVSLEGK	12	Unmodified	_LGGNVVVSLEGK_			0	0	0	Q9Y281	Q9Y281	Q9Y281	CFL2	Cofilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.337695	1170.66084	1.5641	0.00091709	-1.6468	-0.00096557	-0.082688	-4.8483E-05	586.3361962869	9.7711	0.15967	9.7711	9.7179	9.8776	0	600	31	0.922661313351899	0.0202707209833614	0.922661313351899	373.9116667781	0	8.2147793128417						275	19	3	NaN	NaN	NaN	0.00066851	1	8637	79.311	68.609	1	80703			11713	3335	9867	10123	11713	11713		
LGGNYGPTVLVQQEALK	17	Unmodified	_LGGNYGPTVLVQQEALK_			0	0	0	O15382	O15382	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.988526	1785.9625	1.9503	0.0017435	-1.1189	-0.0010003	0.83138	0.00074324	894.488829367778	12.396	0.12415	12.396	12.298	12.423	0	282	34	1.13599383354359	0.0219783806996243	1.13599383354359	458.51353678717	0	8.87098571301618						272	15	3	NaN	NaN	NaN	1.7687E-08	1	26865	132.93	99.18	1	92133			11714	171	9868	10124	11714	11714		
LGGSAVISLEGK	12	Unmodified	_LGGSAVISLEGK_			0	0	0	P23528	P23528	P23528	CFL1	Cofilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.824421	1129.63429	1.3282	0.00075154	-0.78638	-0.00044495	0.54185	0.00030659	565.824293409676	9.0262	0.29264	9.0262	8.973	9.2656	0	618	85	0.910492137470517	0.0567895384538171	0.910492137470517	369.136079091146	0	23.023886418697						1223	34	5	NaN	NaN	NaN	1.4119E-07	1	7528	144.47	112.33	1	1644200			11715	823	9869	10125	11715	11715		
LGGSLADSYLDEGFLLDK	18	Unmodified	_LGGSLADSYLDEGFLLDK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.980563	1911.94657	1.7959	0.0017186	0.3599	0.00034442	2.1558	0.002063	957.48261459277	17.575	0.25715	17.575	17.468	17.725	0	210	79	1.18386433251387	0.051781389209637	1.18386433251387	477.592521157633	0	20.889559337565						1844	30	6	NaN	NaN	NaN	1.9729E-26	1	29870	226.06	198.69	1	1535600			11716	1461	9870	10126	11716	11716		
LGGSLIVAFEGCPV	14	Unmodified	_LGGSLIVAFEGCPV_			0	0	0	P60981	P60981	P60981	DSTN	Destrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.871045	1417.72754	0.74407	0.00052819	-0.81392	-0.00057778	-0.069859	-4.9591E-05	709.870561824923	18.621	0.1596	18.621	18.568	18.727	0	477	55	1.0055473068722	0.0363059678066375	1.0055473068722	406.673399491956	0	14.683219027951						479	19	4	NaN	NaN	NaN	0.0013111	1	16020	85.716	78.159	1	113010			11717	1317	9871	10127	11717	11717		
LGGSPFGPAGTGK	13	Unmodified	_LGGSPFGPAGTGK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.301113	1144.58767	0.64537	0.00036999	-1.0348	-0.00059324	-0.38942	-0.00022325	573.300496146329	6.7555	0.15958	6.7555	6.7111	6.8707	0	669	67	0.875957769340875	0.044762926451146	0.875957769340875	355.079046658438	0	18.1451410173285						439	19	4	NaN	NaN	NaN	4.4178E-11	1	7921	162.21	133.56	1	144000			11718	1737	9872	10128	11718	11718		
LGGSPTSLGTWGSWIGPDHDK	21	Unmodified	_LGGSPTSLGTWGSWIGPDHDK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.351754	2167.03343	1.3451	0.00097297	-1.009	-0.00072987	0.33608	0.00024311	723.685314591655	14.329	0.17735	14.329	14.267	14.444	0	582	79	0.934820374997243	0.0526893075878215	0.934820374997243	565.203751780009	0	31.8565952602557						1527	21	6	NaN	NaN	NaN	8.5426E-30	1	34266	258.79	247.31	1	974600			11719	694	9873	10129	11719	11719		
LGGSPTSLGTWGSWIGPDHDK	21	Unmodified	_LGGSPTSLGTWGSWIGPDHDK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.52399	2167.03343	1.6615	0.001802	-0.72312	-0.00078424	0.9384	0.0010177	1085.02465084296	14.329	0.14185	14.329	14.276	14.418	0	144	85	1.22760721615852	0.0556345977891213	1.22760721615852	494.818951185164	0	22.4249686424675						827	17	4	NaN	NaN	NaN	0.00029556	1	34267	45.826	37.413	1	184840			11720	694	9873	10129	11720	11720		
LGGSQEDQIK	10	Unmodified	_LGGSQEDQIK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.774928	1073.5353	1.8423	0.00099074	-1.8072	-0.00097189	0.035066	1.8857E-05	537.775126160676	3.1109	0.31035	3.1109	3.04	3.3503	0	690	82	0.86171403876517	0.0549248965738224	0.86171403876517	349.580255301585	0	22.2819386744638						939	36	4	NaN	NaN	NaN	3.5576E-07	1	6037	131.22	103.49	1	436570			11721	1002	9874	10130	11721	11721		
LGGTCVNVGCVPK	13	Unmodified	_LGGTCVNVGCVPK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.839222	1359.66389	2.2618	0.0015399	-2.4487	-0.0016672	-0.18687	-0.00012723	680.837728430832	7.3674	0.35467	7.3674	7.1811	7.5358	0	459	106	1.01763759082241	0.0705706245074486	1.01763759082241	411.732831669602	0	28.5526432230773						1214	41	4	NaN	NaN	NaN	1.2137E-16	1	14183	164.31	130.58	1	444190			11722	475	9875	10131	11722	11722		
LGGTIDDCELVEGLVLTQK	19	Unmodified	_LGGTIDDCELVEGLVLTQK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.357517	2059.05072	-0.24015	-0.00016507	-0.82236	-0.00056525	-1.0625	-0.00073032	687.691256633507	17.007	0.24827	17.007	16.954	17.202	0	555	40	0.953040030838688	0.0262990708755764	0.953040030838688	576.411823820329	0	15.906042681996						772	29	6	NaN	NaN	NaN	1.4317E-14	1	32691	171.2	156.81	1	384770			11723	1175	9876	10132	11723	11723		
LGGTIDDCELVEGLVLTQK	19	Unmodified	_LGGTIDDCELVEGLVLTQK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.53264	2059.05072	1.0232	0.0010545	-0.1774	-0.00018282	0.84583	0.00087166	1031.03447575822	17.007	0.35462	17.007	16.927	17.282	0	162	85	1.21569043230068	0.0556269659281847	1.21569043230068	490.179221988681	0	22.4293801742484						1389	41	6	NaN	NaN	NaN	5.3098E-46	1	32692	255.37	226.24	1	851240			11724	1175	9876	10132	11724	11724		
LGHAETDEQLQNIISK	16	Unmodified	_LGHAETDEQLQNIISK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.311007	1794.91119	-0.82763	-0.00049601	-0.55359	-0.00033177	-1.3812	-0.00082778	599.310624843259	8.9287	0.12429	8.9287	8.8842	9.0085	0	741	40	0.827064408645228	0.0265262507146683	0.827064408645228	500.712262719799	0	16.059231757501						404	15	4	NaN	NaN	NaN	7.7455E-07	1	27103	124.06	113.09	1	158200			11725	2013	9877	10133	11725	11725		
LGHAETDEQLQNIISK	16	Unmodified	_LGHAETDEQLQNIISK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.462872	1794.91119	2.1856	0.0019637	-2.1831	-0.0019615	0.0024629	2.2128E-06	898.461354972738	8.9375	0.088839	8.9375	8.8931	8.9819	0	291	31	1.12999890578964	0.0199872193339929	1.12999890578964	456.076328996801	0	8.06699685636545						240	11	4	NaN	NaN	NaN	0.0049231	1	27104	49.487	43.459	1	59545			11726	2013	9877	10133	11726	11726		
LGHELQQAGLK	11	Unmodified	_LGHELQQAGLK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.559417	1192.65642	-1.157	-0.00046115	0.44882	0.00017888	-0.70821	-0.00028227	398.559742515953	4.6805	0.097551	4.6805	4.645	4.7425	0	870	34	0.739054571787983	0.0225769261223968	0.739054571787983	449.155758998436	0	13.7209845868673						171	12	4	NaN	NaN	NaN	0.029316	1	9242	29.31	24.403	1	52689			11727	1782	9878	10134	11727	11727		
LGHGLLSGEYSK	12	Unmodified	_LGHGLLSGEYSK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.832777	1259.651	2.1784	0.0013742	-0.65949	-0.00041603	1.5189	0.00095817	630.832468689122	6.1081	0.1596	6.1081	6.0638	6.2234	0	540	34	0.963152256458504	0.0222376640579702	0.963152256458504	389.999461166746	0	9.00447145512055						322	19	4	NaN	NaN	NaN	5.0462E-05	1	11205	116.13	95.949	1	143310			11728	1072	9879	10135	11728	11728		
LGHTDILVGVK	11	Unmodified	_LGHTDILVGVK_			0	0	0	Q15024	Q15024	Q15024	EXOSC7	Exosome complex component RRP42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	384.564279	1150.67101	-1.2523	-0.00048158	-1.0197	-0.00039215	-2.272	-0.00087373	384.563531767244	7.3674	0.044337	7.3674	7.3408	7.3851	0	891	13	0.724677416575734	0.00821952916569113	0.724677416575734	440.601561159514	0	4.99744755330204						42	6	2	NaN	NaN	NaN	0.028085	1	8098	24.121	22.151	1	6932.7			11729	1795	9880	10136	11729	11729		
LGIDDLVHFDFMDPPAPETLMR	22	Unmodified	_LGIDDLVHFDFMDPPAPETLMR_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	843.743266	2528.20797	0.34399	0.00029024	-1.438	-0.0012133	-1.094	-0.00092308	844.076020896402	20.022	0.053202	20.022	19.995	20.049	0	540	49	0.963152256458504	0.0323434604594182	0.963152256458504	581.80382840277	0	19.5374604512426						204	7	6	NaN	NaN	NaN	0.00062109	1	36957	23.107	18.026	1	53136			11730	181	9881	10137	11730	11730		
LGIEGLSLHNVLK	13	Unmodified	_LGIEGLSLHNVLK_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.914101	1391.81365	1.3799	0.0009617	0.6578	0.00045843	2.0377	0.0014201	697.415358316056	13.717	0.11527	13.717	13.682	13.797	0	372	202	1.07593298845566	0.133998023117264	1.07593298845566	435.21773003367	0	54.2025535752015						538	14	4	NaN	NaN	NaN	6.4261E-06	1	15216	135.28	94.78	1	143930			11731	3121	9882	10138	11731	11731		
LGIGMDTCVIPLR	13	Unmodified	_LGIGMDTCVIPLR_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.886172	1443.75779	1.166	0.00084286	-0.032511	-2.3502E-05	1.1335	0.00081936	722.886323920236	15.074	0.13292	15.074	15.021	15.154	0	444	43	1.02770517576159	0.0281795132980842	1.02770517576159	415.562296077554	0	11.3946524009883						401	16	4	NaN	NaN	NaN	5.4578E-05	1	16790	99.34	86.745	1	111450			11732	1154	9883	10139	11732	11732		
LGIGQSQEMNTLFR	14	Unmodified	_LGIGQSQEMNTLFR_			0	0	0	Q6PKG0;Q659C4	Q6PKG0	Q6PKG0	LARP1;LARP1B	La-related protein 1;La-related protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.406315	1592.79808	1.9474	0.0015528	1.4314	0.0011414	3.3788	0.0026943	797.407571622944	13.398	0.14195	13.398	13.354	13.496	0	342	49	1.09598084995137	0.0320589101536728	1.09598084995137	442.776419421451	0	12.9518042664952						406	17	4	NaN	NaN	NaN	8.7089E-12	1	21357	112.73	98.732	1	110220			11733	2079	9884	10140	11733	11733		
LGIHEDSQNR	10	Unmodified	_LGIHEDSQNR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.195026	1167.56325	0.14106	5.5042E-05	0.6791	0.00026498	0.82016	0.00032002	390.195297996066	2.4724	0.53206	2.4724	2.4281	2.9602	0	888	46	0.726732155490709	0.0308210921232054	0.726732155490709	441.775244156566	0	18.7359199603699						989	61	4	NaN	NaN	NaN	5.4915E-05	1	8532	122.44	90.308	1	467990			11734	567	9885	10141	11734	11734		
LGIHEDSQNR	10	Unmodified	_LGIHEDSQNR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.788901	1167.56325	1.8228	0.001066	3.0636	0.0017916	4.8865	0.0028576	584.790444309919	2.4636	0.54092	2.4636	2.4193	2.9602	0	648	31	0.890187667287968	0.0203241961529822	0.890187667287968	360.762735851643	0	8.23670432378998						458	62	4	NaN	NaN	NaN	0.0093773	1	8535	50.834	14.624	1	205190			11735	567	9885	10141	11735	11735		
LGIHEDSTNR	10	Unmodified	_LGIHEDSTNR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	381.191393	1140.55235	-0.2939	-0.00011203	2.082	0.00079365	1.7881	0.00068162	381.192171574166	2.6676	0.27487	2.6676	2.6321	2.907	0	789	88	0.794378096728713	0.0593719317597562	0.794378096728713	483.029986143645	0	36.1017297598405						589	32	3	NaN	NaN	NaN	0.067436	1	7802	8.4737	3.9341	1	194090			11736	579	9886	10142	11736	11736		
LGIHEDSTNR	10	Unmodified	_LGIHEDSTNR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	381.191393	1140.55235	0.80386	0.00030642	0.96638	0.00036838	1.7702	0.0006748	381.191879102376	2.6676	0.6473	2.6676	2.6232	3.2705	0	891	55	0.724677416575734	0.036987895105198	0.724677416575734	440.647757783668	0	22.4908803150756						1554	74	4	NaN	NaN	NaN	0.00061061	1	7803	100.84	93.189	1	1430800			11737	579	9886	10142	11737	11737		
LGIHEDSTNR	10	Unmodified	_LGIHEDSTNR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.283451	1140.55235	2.2206	0.0012686	0.030037	1.716E-05	2.2506	0.0012858	571.283668702245	2.6676	0.30147	2.6676	2.6321	2.9336	0	672	64	0.873923798053065	0.0427074914012542	0.873923798053065	354.269468801485	0	17.3126768332353						1040	35	5	NaN	NaN	NaN	1.7378E-07	1	7804	131.22	110.99	1	691350			11738	579	9886	10142	11738	11738		
LGIHSALLDEK	11	Unmodified	_LGIHSALLDEK_			0	0	0	Q86SX6	Q86SX6	Q86SX6	GLRX5	Glutaredoxin-related protein 5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.337695	1194.66084	1.0984	0.00065723	2.4117	0.001443	3.5101	0.0021002	598.339207530362	8.1745	0.10641	8.1745	8.1302	8.2366	0	546	40	0.959108205975751	0.0262917911447993	0.959108205975751	388.590930661928	0	10.6523450910657						272	13	3	NaN	NaN	NaN	3.119E-05	1	9292	111.61	87.485	1	68633			11739	2156	9887	10143	11739	11739		
LGINSLQELK	10	Unmodified	_LGINSLQELK_			0	0	0	P55327	P55327	P55327	TPD52	Tumor protein D52	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.826963	1113.63937	1.2589	0.00070222	-1.7496	-0.00097597	-0.49073	-0.00027374	557.826862959758	11.279	0.25718	11.279	11.172	11.429	0	585	67	0.932794566565362	0.0446017870007702	0.932794566565362	378.243522145654	0	18.0858011118995						613	30	4	NaN	NaN	NaN	1.0298E-10	1	7092	201.21	131.31	1	329900			11740	1274	9888	10144	11740	11740		
LGIQTDDK	8	Unmodified	_LGIQTDDK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.234907	888.455261	0.19666	8.756E-05	-5.6414	-0.0025118	-5.4447	-0.0024242	445.233399862149	3.8647	0.16848	3.8647	3.7849	3.9534	0	786	34	0.796423123669906	0.0224921689856458	0.796423123669906	323.944255777656	0	9.1486657360042						393	20	4	NaN	NaN	NaN	0.051106	1	2127	25.254	11.606	1	186500			11741	475	9889	10145	11741	11741		
LGIWGEGTPFR	11	Unmodified	_LGIWGEGTPFR_			0	0	0	A3KN83;Q9Y2G9	A3KN83	A3KN83	SBNO1;SBNO2	Protein strawberry notch homolog 1;Protein strawberry notch homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.824755	1231.63496	0.70344	0.0004339	-3.9889	-0.0024604	-3.2854	-0.0020265	616.822622703007	14.409	0.14187	14.409	14.356	14.498	0	591	37	0.928742107665821	0.0243181264417436	0.928742107665821	376.158865790162	0	9.84932069404937						290	17	3	NaN	NaN	NaN	0.0015755	1	10367	53.517	37.935	1	74852			11742	8	9890	10146	11742	11742		
LGIYDADGDGDFDVDDAK	18	Unmodified	_LGIYDADGDGDFDVDDAK_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.907792	1899.80103	2.2992	0.0021863	1.047	0.00099557	3.3462	0.0031819	950.908755070672	12.609	0.16847	12.609	12.547	12.715	0	258	91	1.15196821829984	0.0598463725959202	1.15196821829984	464.746448645534	0	24.1442330495198						1341	20	5	NaN	NaN	NaN	5.1082E-15	1	29590	164.56	156.19	1	968540			11743	1596	9891	10147	11743	11743		
LGIYTVLFER	10	Unmodified	_LGIYTVLFER_			0	0	0	Q02978	Q02978	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.845156	1209.67576	-0.57039	-0.00034557	-1.9291	-0.0011687	-2.4995	-0.0015143	605.843867984931	16.714	0.15073	16.714	16.652	16.803	0	591	34	0.928742107665821	0.0222900711025618	0.928742107665821	376.234531025381	0	9.02973428099619						300	18	4	NaN	NaN	NaN	0.0010551	1	9731	67.507	46.233	1	110670			11744	1535	9892	10148	11744	11744		
LGLAPQIQDLYGK	13	Unmodified	_LGLAPQIQDLYGK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.398284	1414.78202	1.9727	0.0013974	-2.2285	-0.0015786	-0.2558	-0.00018121	708.396328008478	13.779	0.26599	13.779	13.664	13.93	0	432	52	1.035754240522	0.034215621891726	1.035754240522	418.898417888216	0	13.8380991520556						740	31	5	NaN	NaN	NaN	2.6607E-07	1	15940	108.4	92.819	1	575980			11745	1095	9893	10149	11745	11745		
LGLDYEER	8	Unmodified	_LGLDYEER_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.745639	993.476725	0.35276	0.00017559	2.7638	0.0013757	3.1166	0.0015513	497.747282949359	7.1014	0.2661	7.1014	6.986	7.2521	0	684	64	0.86578508874114	0.0427549521796229	0.86578508874114	351.590106487767	0	17.3625283978613						735	31	4	NaN	NaN	NaN	0.0028771	1	4132	82.716	43.392	1	617550			11746	2660	9894	10150	11746	11746		
LGLEALAANHQQLFTDGR	18	Unmodified	_LGLEALAANHQQLFTDGR_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.009551	1953.00682	-0.47692	-0.00031095	-0.35797	-0.0002334	-0.83489	-0.00054435	652.343967481086	13.194	0.079827	13.194	13.167	13.247	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	523.829034331668	0	9.85112018353266						139	10	3	NaN	NaN	NaN	0.0015614	1	30771	53.363	48.809	1	35648			11747	3360	9895	10151	11747	11747		
LGLEFFDQPAVPLAR	15	Unmodified	_LGLEFFDQPAVPLAR_			0	0	0	P29372	P29372	P29372	MPG	DNA-3-methyladenine glycosylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.956497	1671.89844	1.4688	0.0012293	0.54453	0.00045575	2.0133	0.0016851	836.956973111194	17.885	0.088666	17.885	17.841	17.929	0	303	43	1.12200181823275	0.0279975177592968	1.12200181823275	453.103982452001	0	11.3063870212699						307	11	4	NaN	NaN	NaN	3.6239E-06	1	23678	88.734	70.636	1	74836			11748	886	9896	10152	11748	11748		
LGLENAEALIR	11	Unmodified	_LGLENAEALIR_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.843145	1197.67174	0.46287	0.00027765	1.0611	0.00063652	1.524	0.00091417	599.84373291116	13.753	0.19507	13.753	13.7	13.895	0	573	43	0.940896116921038	0.028363289192291	0.940896116921038	381.201209822223	0	11.4913006443476						247	23	2	NaN	NaN	NaN	0.0016517	1	9406	74.424	60.429	1	125500			11749	621	9897	10153	11749	11749		
LGLFPSNFVK	10	Unmodified	_LGLFPSNFVK_			0	0	0	Q9Y5K6	Q9Y5K6	Q9Y5K6	CD2AP	CD2-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.321317	1120.62808	-0.60045	-0.00033704	-1.2703	-0.00071302	-1.8707	-0.0010501	561.320823469221	14.852	0.15071	14.852	14.79	14.941	0	618	37	0.910492137470517	0.0243518545960122	0.910492137470517	369.171847277933	0	9.87380206360598						317	18	3	NaN	NaN	NaN	0.066007	1	7290	29.31	19.222	1	116570			11750	3435	9898	10154	11750	11750		
LGLFYQLLHK	10	Unmodified	_LGLFYQLLHK_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.24477	1230.71248	-3.1404	-0.0012915	1.3152	0.00054087	-1.8252	-0.00075059	411.245330870521	14.764	0.097565	14.764	14.728	14.826	0	828	22	0.767766820543916	0.0143431242639176	0.767766820543916	466.440667399203	0	8.71386503718901						146	12	3	NaN	NaN	NaN	0.063693	1	10343	8.1826	5.5839	1	33987			11751	6	9899	10155	11751	11751		
LGLGEGAEEK	10	Unmodified	_LGLGEGAEEK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.758746	1001.50294	0.82868	0.0004158	1.0534	0.00052857	1.8821	0.00094437	501.759594645866	4.6273	0.15958	4.6273	4.5652	4.7248	0	693	49	0.85967808974117	0.0325819812150898	0.85967808974117	349.071885606497	0	13.229898208725						435	19	3	NaN	NaN	NaN	5.8664E-05	1	4318	74.269	40.873	1	251510			11752	758	9900	10156	11752	11752		
LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR	34	Unmodified	_LGLGIDEDDPTADDTSAAVTEEMPPLEGDDDTSR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1183.18446	3546.53154	2.1384	0.0025301	-0.27812	-0.00032907	1.8603	0.002201	1183.51882780639	16.049	0.070947	16.049	16.023	16.094	0	309	67	1.11800162319566	0.0440082277490712	1.11800162319566	674.281255057211	0	26.5419319827714						461	9	5	NaN	NaN	NaN	0.0020682	1	38668	15.559	14.34	1	83292			11753	567	9901	10157	11753	11753		
LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR	34	Unmodified	_LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1178.21983	3531.63766	1.9884	0.0023428	-0.029392	-3.463E-05	1.959	0.0023082	1178.55404121615	16.972	0.40791	16.972	16.918	17.326	0	288	169	1.13199748998575	0.111928830384335	1.13199748998575	682.733605740081	0	67.5068404573306						5979	47	6	NaN	NaN	NaN	5.3527E-16	1	38665	137.89	136.07	1	1784900			11754	579	9902	10158	11754	11754		
LGLGSVVPVEYLLDR	15	Unmodified	_LGLGSVVPVEYLLDR_			0	0	0	Q7LBC6	Q7LBC6	Q7LBC6	KDM3B	Lysine-specific demethylase 3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.464155	1628.91376	0.87046	0.00070983	-3.2436	-0.002645	-2.3732	-0.0019352	815.460645357624	19.135	0.07981	19.135	19.091	19.171	0	354	25	1.08796502040166	0.0160360785549387	1.08796502040166	439.454024458336	0	6.47733991934422						173	10	4	NaN	NaN	NaN	0.0044466	1	22452	57.293	45.274	1	55682			11755	2123	9903	10159	11755	11755		
LGLGTAYIHGMK	12	Unmodified	_LGLGTAYIHGMK_			0	0	0	O60762	O60762	O60762	DPM1	Dolichol-phosphate mannosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	420.897152	1259.66963	-1.6743	-0.0007047	-4.261	-0.0017934	-5.9352	-0.0024981	421.228817442967	8.9375	0.15092	8.9375	8.8753	9.0262	0	810	31	0.78005493425781	0.0204687855658668	0.78005493425781	473.785420909035	0	12.4322169618067						233	18	4	NaN	NaN	NaN	0.03482	1	11208	30.918	26.716	1	58913			11756	279	9904	10160	11756	11756		
LGLHQVLQDLR	11	Unmodified	_LGLHQVLQDLR_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	431.254216	1290.74082	-2.6406	-0.0011388	-0.03947	-1.7022E-05	-2.6801	-0.0011558	431.254277828571	12.174	0.13302	12.174	12.121	12.254	0	786	31	0.796423123669906	0.0204516951022167	0.796423123669906	483.600931799147	0	12.4185982480379						317	16	4	NaN	NaN	NaN	0.013022	1	12108	32.549	25.398	1	130740			11757	270	9905	10161	11757	11757		
LGLHQVLQDLR	11	Unmodified	_LGLHQVLQDLR_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.377686	1290.74082	1.0914	0.00070545	0.99994	0.00064634	2.0913	0.0013518	646.378081242086	12.165	0.11523	12.165	12.13	12.245	0	477	37	1.0055473068722	0.0241939396115666	1.0055473068722	407.059689650766	0	9.79404696567434						261	14	3	NaN	NaN	NaN	2.4254E-07	1	12109	116.13	81.179	1	77533			11758	270	9905	10161	11758	11758		
LGLIEWLENTVTLK	14	Unmodified	_LGLIEWLENTVTLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.966531	1627.91851	1.2756	0.0010396	-1.0724	-0.00087398	0.20322	0.00016561	815.466533715831	20.164	0.026601	20.164	20.164	20.19	0	351	28	1.08996939197032	0.0180443182324475	1.08996939197032	440.265897788906	0	7.288551426418						37	4	2	NaN	NaN	NaN	0.044588	1	22420	12.582	9.4794	1	18798			11759	1465	9906	10162	11759	11759		
LGLIPLISDDIVDK	14	Unmodified	_LGLIPLISDDIVDK_			0	0	0	P19387	P19387	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.939982	1509.86541	0.68729	0.00051955	0.21432	0.00016201	0.90161	0.00068156	755.940011374574	18.869	0.10637	18.869	18.834	18.94	0	384	58	1.06790610341098	0.038151386180588	1.06790610341098	431.638435597534	0	15.4204612130855						470	13	3	NaN	NaN	NaN	0.00035013	1	18814	71.066	65.2	1	134680			11760	766	9907	10163	11760	11760		
LGLLDNHSSEFNVTR	15	Unmodified	_LGLLDNHSSEFNVTR_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.956676	1700.8482	-0.25193	-0.00014308	-1.0305	-0.00058526	-1.2824	-0.00072835	567.956087337892	10.746	0.15073	10.746	10.702	10.853	0	750	52	0.820941264895493	0.0346930021779448	0.820941264895493	497.215684121038	0	21.012349542833						539	18	5	NaN	NaN	NaN	2.756E-06	1	24518	128.41	111.42	1	261570			11761	990	9908	10164	11761	11761		
LGLLDTQTSQVLTAVDK	17	Unmodified	_LGLLDTQTSQVLTAVDK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.498923	1800.98329	1.918	0.001729	1.1635	0.0010489	3.0814	0.0027779	901.499815174439	15.446	0.13314	15.446	15.411	15.544	0	270	46	1.14398322290989	0.0299457990426275	1.14398322290989	461.708561255853	0	12.0860441960498						332	16	3	NaN	NaN	NaN	8.0862E-07	1	27247	98.865	90.901	1	113580			11762	1298	9909	10165	11762	11762		
LGLLEALLK	9	Unmodified	_LGLLEALLK_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.320786	968.627018	-1.1255	-0.00054622	0.42891	0.00020816	-0.69658	-0.00033806	485.321002186126	18.266	0.11528	18.266	18.222	18.337	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	345.922939131765	0	8.27593479788533						228	14	3	NaN	NaN	NaN	0.011207	1	3611	65.156	37.42	1	80949			11763	2328	9910	10166	11763	11763		
LGLLGALMAEDGVR	14	Unmodified	_LGLLGALMAEDGVR_			0	0	0	Q9H4L4	Q9H4L4	Q9H4L4	SENP3	Sentrin-specific protease 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.889769	1413.76499	0.54143	0.00038327	-0.45443	-0.00032169	0.087	6.1586E-05	707.889970596567	17.947	0.11526	17.947	17.912	18.027	0	474	37	1.00756305028564	0.024187253928307	1.00756305028564	407.499658904939	0	9.78231359599584						318	14	4	NaN	NaN	NaN	0.00060918	1	15895	54.27	44.756	1	86650			11764	2895	9911	10167	11764	11764		
LGLLGLANSLAIEGR	15	Unmodified	_LGLLGLANSLAIEGR_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.94339	1495.87223	0.52507	0.00039325	0.2399	0.00017967	0.76497	0.00057292	748.943807241823	18.062	0.088676	18.062	18.027	18.115	0	420	40	1.04379886199097	0.0261360051694259	1.04379886199097	421.930344713515	0	10.5648454622146						312	11	4	NaN	NaN	NaN	0.00020231	1	18424	72.846	69.238	1	97902			11765	1195	9912	10168	11765	11765		
LGLLTSDADCEIEK	14	Unmodified	_LGLLTSDADCEIEK_			0	0	0	Q9UBT7	Q9UBT7	Q9UBT7	CTNNAL1	Alpha-catulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.382171	1562.74979	2.4181	0.0018919	0.17709	0.00013855	2.5952	0.0020304	782.382810592651	11.11	0.070928	11.11	11.075	11.146	0	345	31	1.09397730668811	0.0200395758714129	1.09397730668811	442.040239203349	0	8.09733333367802						163	9	3	NaN	NaN	NaN	0.0016972	1	20438	39.702	37.223	1	33130			11766	3189	9913	10169	11766	11766		
LGLPPLTPEQQEALQK	16	Unmodified	_LGLPPLTPEQQEALQK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.490901	1760.96725	2.4692	0.0021765	0.11046	9.7366E-05	2.5796	0.0022739	881.491005821305	12.609	0.34583	12.609	12.52	12.866	0	231	112	1.16991841121525	0.0738664041833432	1.16991841121525	472.25791550158	0	29.8174588337208						2041	40	5	NaN	NaN	NaN	0.0015005	1	26180	58.476	44.678	1	739560			11767	3225	9914	10170	11767	11767		
LGLQNDLFSLAR	12	Unmodified	_LGLQNDLFSLAR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.874976	1345.7354	0.58183	0.00039208	-1.1735	-0.00079081	-0.59169	-0.00039872	673.87430401126	15.961	0.15962	15.961	15.881	16.041	0	504	64	0.987393073566096	0.0423598959257468	0.987393073566096	399.537604494129	0	17.1404598613083						657	19	5	NaN	NaN	NaN	4.537E-08	1	13785	152.17	111.78	1	376350			11768	1277	9915	10171	11768	11768		
LGLSDMNLYDHELVFGVSLK	20	Unmodified	_LGLSDMNLYDHELVFGVSLK_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.720678	2249.14021	-0.476	-0.00035735	-0.079653	-5.9797E-05	-0.55566	-0.00041714	751.054698758357	18.248	0.070947	18.248	18.222	18.293	0	579	28	0.936845902828289	0.0182297522282956	0.936845902828289	566.296803045589	0	11.0193686880959						172	9	6	NaN	NaN	NaN	1.5176E-05	1	35175	59.171	57.07	1	31769			11769	1706	9916	10172	11769	11769		
LGLSIPDLTPK	11	Unmodified	_LGLSIPDLTPK_			0	0	0	Q6PI78	Q6PI78	Q6PI78	TMEM65	Transmembrane protein 65	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.344989	1152.67542	-0.29938	-0.00017285	-0.10633	-6.139E-05	-0.40571	-0.00023424	577.344952236264	14.888	0.14186	14.888	14.817	14.959	0	576	43	0.938871150116794	0.0283397285014204	0.938871150116794	380.549879921897	0	11.4868587418977						274	17	2	NaN	NaN	NaN	0.0066007	1	8148	41.796	31.094	1	52433			11770	2074	9917	10173	11770	11770		
LGLSTLGELK	10	Unmodified	_LGLSTLGELK_			0	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.810782	1029.60701	0.38705	0.00019965	-1.3168	-0.0006792	-0.9297	-0.00047955	515.81003130838	12.236	0.25716	12.236	12.183	12.44	0	657	85	0.884090832094921	0.0569710178899286	0.884090832094921	358.85186105398	0	23.124497001622						845	30	4	NaN	NaN	NaN	0.0010908	1	4994	81.163	46.232	1	521090			11771	199	9918	10174	11771	11771		
LGLTDINEAYVETLK	15	Unmodified	_LGLTDINEAYVETLK_			0	0	0	Q9Y4P1	Q9Y4P1	Q9Y4P1	ATG4B	Cysteine protease ATG4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.948535	1677.88252	1.8158	0.0015252	1.4262	0.0011979	3.242	0.0027231	840.44924362504	15.606	0.11525	15.606	15.571	15.686	-1.7764E-15	318	40	1.11199926528787	0.0260102225300953	1.11199926528787	449.051429758723	0	10.503538968129						362	14	4	NaN	NaN	NaN	7.9571E-12	1	23862	121.69	91.343	1	80910			11772	3412	9919	10175	11772	11772		
LGLTEDQFIR	10	Unmodified	_LGLTEDQFIR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.322045	1190.62954	0.2605	0.00015534	-0.93618	-0.00055826	-0.67568	-0.00040292	596.320984264816	11.633	0.20401	11.633	11.536	11.74	0	594	40	0.926715457081489	0.0263501137530128	0.926715457081489	375.481259185851	0	10.6763881146763						414	24	3	NaN	NaN	NaN	0.00093525	1	9183	69.716	46.14	1	137230			11773	878	9920	10176	11773	11773		
LGLTMQYPEGYLEALANR	18	Unmodified	_LGLTMQYPEGYLEALANR_			0	0	0	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.01696	2038.01936	0.53411	0.0005448	0.53489	0.00054559	1.069	0.0010904	1020.51910102018	18.178	0.088668	18.178	18.133	18.222	0	168	43	1.21171599086077	0.0278249138600277	1.21171599086077	488.6104526906	0	11.2200745552324						250	11	4	NaN	NaN	NaN	8.7783E-07	1	32313	70.806	61.228	1	42123			11774	2632	9921	10177	11774	11774		
LGLVGVNLTLDGVK	14	Unmodified	_LGLVGVNLTLDGVK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.421759	1396.82897	0.79311	0.00055472	-0.43345	-0.00030316	0.35966	0.00025155	699.421689010368	16.227	0.23055	16.227	16.147	16.377	0	453	55	1.02166545906632	0.0362358117053279	1.02166545906632	413.251779187872	0	14.6569638081221						592	27	4	NaN	NaN	NaN	0.00024827	1	15356	65.879	45.696	1	321510			11775	1235	9922	10178	11775	11775		
LGMENDDTAVQYAIGR	16	Unmodified	_LGMENDDTAVQYAIGR_			0	0	0	Q05048	Q05048	Q05048	CSTF1	Cleavage stimulation factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.914701	1751.81485	2.6216	0.0022989	-2.0403	-0.0017892	0.58129	0.00050974	877.414248146653	11.367	0.079843	11.367	11.323	11.403	0	351	46	1.08996939197032	0.0300738688612157	1.08996939197032	440.003067095303	0	12.1403358991912						281	10	4	NaN	NaN	NaN	1.6529E-10	1	25942	117.21	100.92	1	57896			11776	1548	9923	10179	11776	11776		
LGMFDLHYCDK	11	Unmodified	_LGMFDLHYCDK_			0	0	0	CON__P34955	CON__P34955	CON__P34955			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.877541	1397.61079	-2.0612	-0.00096232	-0.59449	-0.00027755	-2.6557	-0.0012399	466.877281318075	11.509	0.12423	11.509	11.465	11.589	0	777	22	0.802556497112065	0.0143092140004129	0.802556497112065	486.931028922674	0	8.68175676275513						212	15	4	NaN	NaN	NaN	0.0022887	1	15361	28.647	22.781	1	49850		+	11777	32	9924	10180	11777	11777		
LGMIAGGTGITPMLQLIR	18	Unmodified	_LGMIAGGTGITPMLQLIR_			0	0	0	Q9UHQ9	Q9UHQ9	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.520624	1841.0267	0.84762	0.0007811	0.46318	0.00042683	1.3108	0.0012079	922.023043743466	19.126	0.07981	19.126	19.091	19.171	0	261	37	1.14997238118939	0.0239516960095993	1.14997238118939	464.048626160603	0	9.66523353889187						232	10	4	NaN	NaN	NaN	0.0010984	1	28269	46.358	40.97	1	49275			11778	3220	9925	10181	11778	11778		
LGMLSPEGTCK	11	Unmodified	_LGMLSPEGTCK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.788666	1191.56278	1.2273	0.00073241	0.9629	0.00057465	2.1902	0.0013071	596.788896885288	7.128	0.33703	7.128	6.9771	7.3142	0	579	61	0.936845902828289	0.0405358392902467	0.936845902828289	379.582441248622	0	16.4239313951227						621	39	2	NaN	NaN	NaN	0.055	1	9203	29.755	15.957	1	424770			11779	1127	9926	10182	11779	11779		
LGMMPLWTK	9	Unmodified	_LGMMPLWTK_			0	0	0	P09001	P09001	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.785198	1075.55584	0.17685	9.5285E-05	0.088518	4.7692E-05	0.26537	0.00014298	539.286814402875	14.302	0.15959	14.302	14.232	14.391	0	702	55	0.853568545818287	0.0366496414922302	0.853568545818287	346.267541255763	0	14.8676767783819						664	19	4	NaN	NaN	NaN	0.017355	1	6100	56.378	47.615	1	167490			11780	594	9927	10183	11780	11780		
LGMPQFLSPEAQSLLR	16	Unmodified	_LGMPQFLSPEAQSLLR_			0	0	0	P51812	P51812	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.979647	1785.94474	1.7696	0.001582	-1.8116	-0.0016196	-0.042033	-3.7576E-05	893.978079508163	17.841	0.16844	17.841	17.752	17.92	0	279	37	1.13799159301878	0.0239714689101356	1.13799159301878	459.319916625002	0	9.67544327104753						379	20	3	NaN	NaN	NaN	0.0044912	1	26864	44.045	39.228	1	104530			11781	1200	9928	10184	11781	11781		
LGMPQFLSTEAQSLLR	16	Unmodified	_LGMPQFLSTEAQSLLR_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.977104	1789.93965	0.89277	0.0007999	-0.069527	-6.2295E-05	0.82325	0.00073761	895.977370791956	19.171	0.1596	19.171	19.073	19.233	0	276	40	1.13998907770044	0.0259673060205863	1.13998907770044	460.118229764211	0	10.4808292567495						375	19	4	NaN	NaN	NaN	0.0028643	1	26980	47.915	42.049	1	77629			11782	1845	9929	10185	11782	11782		
LGMSADPDNEDATDK	15	Unmodified	_LGMSADPDNEDATDK_			0	0	0	O75152	O75152	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.833042	1577.65153	1.8309	0.0014461	1.4554	0.0011495	3.2862	0.0025956	789.832134921571	5.2835	0.16851	5.2835	5.2479	5.4164	0	444	31	1.02770517576159	0.0201310011285361	1.02770517576159	415.227396487807	0	8.13360035975364						184	20	3	NaN	NaN	NaN	0.031243	1	20890	39.702	37.031	1	49972			11783	306	9930	10186	11783	11783		
LGNDFHTNK	9	Unmodified	_LGNDFHTNK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.256705	1044.49886	1.3678	0.0007157	-2.3341	-0.0012214	-0.96636	-0.00050566	523.255859509658	2.437	0.33695	2.437	2.3217	2.6587	0	708	22	0.849494101904619	0.0142635264886745	0.849494101904619	344.744212672298	0	5.78846656880103						239	39	2	NaN	NaN	NaN	0.060378	1	5329	40.502	15.249	1	43140			11784	589	9931	10187	11784	11784		
LGNDFHTNK	9	Unmodified	_LGNDFHTNK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	349.173562	1044.49886	-0.25318	-8.8404E-05	1.4459	0.00050487	1.1927	0.00041647	349.173987554905	2.4281	0.15076	2.4281	2.4104	2.5611	0	900	19	0.718511479433384	0.012334456141503	0.718511479433384	437.377181346206	0	7.50831380573527						121	18	2	NaN	NaN	NaN	0.066271	1	5330	13.274	7.0432	1	23430			11785	589	9931	10187	11785	11785		
LGNFFSPK	8	Unmodified	_LGNFFSPK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.245078	908.475603	-2.3236	-0.0010578	-0.97269	-0.00044281	-3.2963	-0.0015006	455.244749082577	9.3278	0.16853	9.3278	9.2745	9.443	0	786	31	0.796423123669906	0.0204488487727063	0.796423123669906	323.835589069462	0	8.31475730838571						217	20	3	NaN	NaN	NaN	0.014717	1	2479	39.324	29.245	1	60074			11786	1095	9932	10188	11786	11786		
LGNFFSPK	8	Unmodified	_LGNFFSPK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.245078	908.475603	-1.3958	-0.00063542	1.9187	0.00087349	0.52295	0.00023807	455.244655590749	9.3278	0.21284	9.3278	9.2479	9.4608	0	750	40	0.820941264895493	0.0265446998138166	0.820941264895493	333.804957108233	0	10.793406010514						484	25	4	NaN	NaN	NaN	0.037142	1	2480	47.349	25.421	1	113380			11787	1095	9932	10188	11787	11787		
LGNNCVFAPADVTSEK	16	Unmodified	_LGNNCVFAPADVTSEK_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.411794	1720.80903	3.4748	0.0029933	-0.68312	-0.00058845	2.7917	0.0024048	861.411770543167	9.7356	0.43445	9.7356	9.5406	9.975	0	318	70	1.11199926528787	0.0460561408828231	1.11199926528787	448.959668455732	0	18.5947512615936						1430	50	6	NaN	NaN	NaN	6.7345E-10	1	25078	137.39	132.86	1	831380			11788	2667	9933	10189	11788	11788		
LGNPIVPLNIR	11	Unmodified	_LGNPIVPLNIR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.371872	1204.72919	0.19516	0.00011775	-1.3947	-0.00084154	-1.1996	-0.00072378	603.371090229641	13.096	0.15969	13.096	13.043	13.203	0	597	106	0.924688525662974	0.0710411085741736	0.924688525662974	374.60976615536	0	28.780170113291						863	19	4	NaN	NaN	NaN	0.00034324	1	9608	86.205	82.86	1	346320			11789	1465	9934	10190	11789	11789		
LGNTISSLFGGGTTPDAK	18	Unmodified	_LGNTISSLFGGGTTPDAK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.446691	1734.87883	2.8133	0.0024432	0.65329	0.00056734	3.4666	0.0030105	868.948802621371	13.85	0.3458	13.85	13.691	14.036	0	285	97	1.13399579921816	0.0638976115425141	1.13399579921816	457.810894594702	0	25.7964118764036						1390	40	5	NaN	NaN	NaN	9.2441E-26	1	25473	206.14	169.63	1	549720			11790	3410	9935	10191	11790	11790		
LGNVNIDIIHR	11	Unmodified	_LGNVNIDIIHR_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.910449	1262.70952	-1.7842	-0.00075276	-0.20482	-8.6415E-05	-1.989	-0.00083918	421.910311066189	9.9307	0.079787	9.9307	9.9041	9.9839	0	840	25	0.759569036796863	0.0164001382999108	0.759569036796863	461.330766150067	0	9.96076459194632						146	10	3	NaN	NaN	NaN	0.0036404	1	11307	60.892	55.985	1	37828			11791	351	9936	10192	11791	11791		
LGNYAGAVQDCER	13	Unmodified	_LGNYAGAVQDCER_			0	0	0	O43765	O43765	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.83044	1451.64633	2.4289	0.0017654	-1.1663	-0.0008477	1.2626	0.00091773	726.83034260658	5.6736	0.21285	5.6736	5.6203	5.8332	0	480	46	1.00353128488872	0.0302361592844221	1.00353128488872	405.766430485699	0	12.2256461848097						364	25	3	NaN	NaN	NaN	0.00023072	1	17020	110.52	102.05	1	166010			11792	227	9937	10193	11792	11792		
LGPASAADTGSEAK	14	Unmodified	_LGPASAADTGSEAK_			0	0	0	Q9NYB0	Q9NYB0	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.814781	1273.61501	2.4764	0.0015795	1.2768	0.00081434	3.7531	0.0023938	637.815917355936	3.7228	0.15072	3.7228	3.6342	3.7849	0	576	31	0.938871150116794	0.0202510727946275	0.938871150116794	380.122351217467	0	8.19908610932634						224	18	2	NaN	NaN	NaN	0.00024516	1	11588	46.068	37.886	1	54524			11793	3112	9938	10194	11793	11793		
LGPEGELLIR	10	Unmodified	_LGPEGELLIR_			0	0	0	Q15758	Q15758	Q15758	SLC1A5	Neutral amino acid transporter B(0)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.821681	1095.62881	0.43118	0.00023664	-0.64624	-0.00035467	-0.21506	-0.00011803	548.821578082545	11.287	0.18626	11.287	11.225	11.412	0	654	52	0.886123392477847	0.0345439513125253	0.886123392477847	359.390790304519	0	14.0102135524649						515	22	3	NaN	NaN	NaN	5.8664E-05	1	6607	74.269	56.873	1	182650			11794	1866	9939	10195	11794	11794		
LGPETPLAMDR	11	Unmodified	_LGPETPLAMDR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.308081	1198.60161	0.45642	0.000274	0.7319	0.00043937	1.1883	0.00071336	600.308977944605	9.3278	0.27492	9.3278	9.1858	9.4608	0	597	31	0.924688525662974	0.0202679123489945	0.924688525662974	374.631444421731	0	8.21141072695031						613	32	5	NaN	NaN	NaN	0.027893	1	9420	57.888	40.418	1	281550			11795	613	9940	10196	11795	11795		
LGPETPLAMDRFPYLALSK	19	Unmodified	_LGPETPLAMDRFPYLALSK_			0	0	1	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.046726	2118.11835	0.080262	5.6749E-05	-1.598	-0.0011298	-1.5177	-0.0010731	707.380061152144	16.502	0.20393	16.502	16.404	16.608	0	648	85	0.890187667287968	0.0568762246107581	0.890187667287968	538.29736187303	0	34.3931092131888						1207	24	6	NaN	NaN	NaN	0.0023131	1	33595	73.262	68.956	1	540430			11796	613	9941	10197	11796	11796		
LGPGGLDPVEVYESLPEELQK	21	Unmodified	_LGPGGLDPVEVYESLPEELQK_			0	0	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.058124	2268.15254	0.57366	0.0004343	-0.34274	-0.00025947	0.23092	0.00017482	757.392460390496	18.665	0.15073	18.665	18.603	18.754	0	483	52	1.00151498427745	0.0342723855002213	1.00151498427745	605.356300076964	0	20.7156206416555						548	18	5	NaN	NaN	NaN	0.00074594	1	35355	52.201	51.39	1	144730			11797	1888	9942	10198	11797	11797		
LGPGGLDPVEVYESLPEELQK	21	Unmodified	_LGPGGLDPVEVYESLPEELQK_			0	0	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1135.08355	2268.15254	0.53266	0.00060462	0.039492	4.4827E-05	0.57216	0.00064945	1135.5852078144	18.674	0.17732	18.674	18.577	18.754	0	69	70	1.27715511956461	0.0455403764010889	1.27715511956461	514.644312499119	0	18.3510173078108						1151	21	6	NaN	NaN	NaN	0.00063194	1	35356	63.79	56.479	1	333810			11798	1888	9942	10198	11798	11798		
LGPLFSLLNENHR	13	Unmodified	_LGPLFSLLNENHR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.94393	1508.80996	-1.6023	-0.00080746	0.13663	6.8852E-05	-1.4657	-0.00073861	503.944014294584	14.772	0.22171	14.772	14.675	14.897	0	723	46	0.839303037468863	0.030585949193784	0.839303037468863	508.858720137964	0	18.5438706475921						531	26	4	NaN	NaN	NaN	0.0024576	1	18768	68.49	44.369	1	176090			11799	1881	9943	10199	11799	11799		
LGPLFSLLNENHR	13	Unmodified	_LGPLFSLLNENHR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.412257	1508.80996	0.68243	0.00051551	0.91927	0.00069443	1.6017	0.0012099	755.413585824654	14.772	0.15966	14.772	14.693	14.852	0	366	28	1.07994477139643	0.0180517806910934	1.07994477139643	436.507132230031	0	7.29642036316886						294	19	3	NaN	NaN	NaN	8.1447E-05	1	18769	92.445	77.297	1	71128			11800	1881	9943	10199	11800	11800		
LGPLLDILADSR	12	Unmodified	_LGPLLDILADSR_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.871902	1281.72925	0.87661	0.00056267	-0.92737	-0.00059525	-0.050759	-3.2581E-05	641.871578065376	17.699	0.20391	17.699	17.619	17.823	0	513	40	0.981336640919867	0.026248176167575	0.981336640919867	397.288452303196	0	10.6264220152043						589	24	4	NaN	NaN	NaN	0.00023301	1	11827	69.276	54.513	1	233500			11801	1701	9944	10200	11801	11801		
LGPLLLDPSLAVR	13	Unmodified	_LGPLLLDPSLAVR_			0	0	0	Q7Z4Q2	Q7Z4Q2	Q7Z4Q2	HEATR3	HEAT repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.41902	1362.82349	-0.10028	-6.8434E-05	-0.59345	-0.00040498	-0.69373	-0.00047342	682.418316858737	16.856	0.12426	16.856	16.803	16.927	0	489	31	0.997481546940468	0.020167188996535	0.997481546940468	403.568338142786	0	8.15938798397531						296	15	3	NaN	NaN	NaN	0.0030331	1	14288	48.785	46.114	1	85833			11802	2139	9945	10201	11802	11802		
LGPVVYVLDLADR	13	Unmodified	_LGPVVYVLDLADR_			0	0	0	Q9NX47	Q9NX47	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.406109	1428.79767	0.62039	0.00044383	-0.20719	-0.00014823	0.4132	0.00029561	715.405740228504	18.053	0.21279	18.053	17.912	18.124	0	465	37	1.01360860968299	0.0241772305983219	1.01360860968299	409.902942980379	0	9.77726301917153						494	25	3	NaN	NaN	NaN	0.017812	1	16362	44.598	38.57	1	102970			11803	3096	9946	10202	11803	11803		
LGQALTEVYAK	11	Unmodified	_LGQALTEVYAK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.832246	1191.64994	1.2369	0.00073823	0.5232	0.00031226	1.7601	0.0010505	596.83260839476	8.2721	0.1597	8.2721	8.2277	8.3874	0	567	28	0.944945209309785	0.0182171330553085	0.944945209309785	382.863723718232	0	7.38104106810641						289	19	3	NaN	NaN	NaN	0.00019819	1	9213	85.622	43.826	1	86948			11804	1498	9947	10203	11804	11804		
LGQEATVGK	9	Unmodified	_LGQEATVGK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.750724	901.486896	-0.28904	-0.00013057	1.3123	0.00059284	1.0233	0.00046226	451.751187859391	2.5523	0.17736	2.5523	2.5256	2.703	0	813	22	0.778007628350577	0.0143351345420983	0.778007628350577	316.384125869069	0	5.82951740580307						142	21	2	NaN	NaN	NaN	0.0062391	1	2351	43.734	28.236	1	29918			11805	1235	9948	10204	11805	11805		
LGQGVLVQVSPSLVK	15	Unmodified	_LGQGVLVQVSPSLVK_			0	0	0	Q13868	Q13868	Q13868	EXOSC2	Exosome complex component RRP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.461416	1522.90828	1.6253	0.0012392	1.5778	0.001203	3.2031	0.0024422	762.462648226143	13.212	0.079808	13.212	13.176	13.256	0	366	73	1.07994477139643	0.0481347926295363	1.07994477139643	436.470395353503	0	19.4541540694773						297	10	2	NaN	NaN	NaN	3.7967E-06	1	19213	101.64	78.745	1	95282			11806	1707	9949	10205	11806	11806		
LGQHVVGMAPLSVGSLDDEPGGEAETK	27	Unmodified	_LGQHVVGMAPLSVGSLDDEPGGEAETK_			0	0	0	P43897	P43897	P43897	TSFM	Elongation factor Ts, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	898.44108	2692.30141	1.45	0.0013027	-0.91409	-0.00082125	0.53591	0.00048149	898.774846777037	12.281	0.1419	12.281	12.21	12.352	0	468	85	1.01159370163332	0.0564681753070051	1.01159370163332	610.861829487251	0	34.0989201693815						1080	17	5	NaN	NaN	NaN	4.2223E-15	1	37584	117.68	110.54	1	264170			11807	1069	9950	10206	11807	11807		
LGQMVLSGVDTVLGK	15	Unmodified	_LGQMVLSGVDTVLGK_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.923809	1515.83306	1.8755	0.0014234	-0.67034	-0.00050873	1.2052	0.00091465	758.923664974207	15.579	0.18621	15.579	15.526	15.712	0	390	43	1.06389100039157	0.0281096037813404	1.06389100039157	430.00019058928	0	11.3612531536754						550	22	5	NaN	NaN	NaN	1.1721E-05	1	19021	119.52	88.603	1	428140			11808	272	9951	10207	11808	11808		
LGQMVLSGVDTVLGK	15	Oxidation (M)	_LGQM(Oxidation (M))VLSGVDTVLGK_	LGQM(1)VLSGVDTVLGK	LGQM(96)VLSGVDTVLGK	0	1	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.921266	1531.82798	2.049	0.0015714	0.1353	0.00010377	2.1843	0.0016752	766.921027416012	13.832	0.2128	13.832	13.735	13.948	0	384	37	1.06790610341098	0.0240873003284932	1.06790610341098	431.582215256532	0	9.73461093827996						534	25	4	NaN	NaN	NaN	0.00039765	1	19496	96.313	78.215	1	202970			11809	272	9951	10208	11809	11809	48	
LGQSDPAPLQHQMDIYQK	18	Unmodified	_LGQSDPAPLQHQMDIYQK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.00966	2068.00477	2.4148	0.0024993	-1.4283	-0.0014783	0.9865	0.001021	1035.50972369328	8.8576	0.15977	8.8576	8.8044	8.9642	0	162	124	1.21569043230068	0.0815489204434936	1.21569043230068	490.165009750092	0	32.8804326514664						1530	19	5	NaN	NaN	NaN	4.4744E-10	1	32845	117.8	102.27	1	601330			11810	888	9952	10209	11810	11810		
LGQSDPAPLQHQMDIYQK	18	Unmodified	_LGQSDPAPLQHQMDIYQK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.342201	2068.00477	1.1333	0.00078237	1.5863	0.0010951	2.7196	0.0018775	690.677858946185	8.8576	0.37259	8.8576	8.7866	9.1592	0	636	109	0.898312834727904	0.0731976775722243	0.898312834727904	543.296306066689	0	44.2696867953529						2792	43	7	NaN	NaN	NaN	8.0333E-35	1	32846	295.16	271.23	1	3966000			11811	888	9952	10209	11811	11811		
LGQSDPAPLQHQMDIYQK	18	Oxidation (M)	_LGQSDPAPLQHQM(Oxidation (M))DIYQK_	LGQSDPAPLQHQM(1)DIYQK	LGQSDPAPLQHQM(45)DIYQK	0	1	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.00712	2083.99969	2.1444	0.0022367	-0.47793	-0.00049849	1.6665	0.0017382	1043.50816452292	6.5693	0.097546	6.5693	6.5338	6.6313	0	165	52	1.21370334790578	0.0337943541860266	1.21370334790578	489.338765095339	0	13.6251478362639						378	12	4	NaN	NaN	NaN	0.031047	1	33079	44.571	39.183	1	82832			11812	888	9952	10210	11812	11812	301	
LGQSDPAPLQHQMDIYQK	18	Oxidation (M)	_LGQSDPAPLQHQM(Oxidation (M))DIYQK_	LGQSDPAPLQHQM(1)DIYQK	LGQSDPAPLQHQM(160)DIYQK	0	1	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.673839	2083.99969	0.93244	0.00064868	1.5592	0.0010847	2.4916	0.0017334	696.009403722103	6.5693	0.17736	6.5693	6.5161	6.6934	0	645	49	0.892219381832517	0.0325096976674552	0.892219381832517	539.583411246638	0	19.660740310274						750	21	6	NaN	NaN	NaN	9.7084E-11	1	33080	164.3	153.33	1	348730			11813	888	9952	10210	11813	11813	301	
LGQSVTTIPTVGFNVETVTYK	21	Unmodified	_LGQSVTTIPTVGFNVETVTYK_			0	0	0	P62330	P62330	P62330	ARF6	ADP-ribosylation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.60191	2253.18926	0.69333	0.0007818	-1.6829	-0.0018976	-0.98955	-0.0011158	1128.10170012891	15.597	0.079799	15.597	15.571	15.65	0	60	43	1.28308947459206	0.0276993500963147	1.28308947459206	517.056542034669	0	11.1622224802067						211	10	4	NaN	NaN	NaN	0.020155	1	35223	23.779	18.697	1	37541			11814	1389	9953	10211	11814	11814		
LGSGPDGAEEIK	12	Unmodified	_LGSGPDGAEEIK_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.793318	1171.57208	1.4712	0.00086332	-0.85689	-0.00050282	0.61435	0.0003605	586.793138623701	4.6095	0.17734	4.6095	4.5209	4.6982	0	624	46	0.906433495720521	0.0304334915876326	0.906433495720521	367.331957265962	0	12.3331651843206						338	21	3	NaN	NaN	NaN	0.022592	1	8646	26.579	18.932	1	84151			11815	1845	9954	10212	11815	11815		
LGSIAIQGAIEK	12	Unmodified	_LGSIAIQGAIEK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.353345	1198.69214	1.0694	0.00064202	0.30137	0.00018093	1.3708	0.00082295	600.353903103444	9.6026	0.16848	9.6026	9.5583	9.7268	0	564	46	0.946969335010767	0.0303618936649183	0.946969335010767	383.65803917502	0	12.3009100278739						464	20	4	NaN	NaN	NaN	2.391E-05	1	9436	112.93	54.01	1	270600			11816	832	9955	10213	11816	11816		
LGSLSER	7	Unmodified	_LGSLSER_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	381.211235	760.407917	-0.57572	-0.00021947	-1.2237	-0.00046648	-1.7994	-0.00068595	381.210639069127	3.1375	0.29261	3.1375	3.102	3.3947	0	843	28	0.757518876820989	0.0184514415745468	0.757518876820989	308.908116667253	0	7.52430103195445						258	34	2	NaN	NaN	NaN	0.050781	1	689	46.835	19.131	1	47462			11817	272	9956	10214	11817	11817		
LGSLVDEFK	9	Unmodified	_LGSLVDEFK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.274032	1006.53351	0.081562	4.113E-05	-1.1371	-0.00057341	-1.0555	-0.00053228	504.273671273826	11.199	0.28379	11.199	11.083	11.367	0	687	52	0.863749705078866	0.0346015342671149	0.863749705078866	350.701418460464	0	14.0489855765306						759	33	4	NaN	NaN	NaN	0.0069061	1	4432	67.464	31.831	1	441580			11818	673	9957	10215	11818	11818		
LGSLVENNER	10	Unmodified	_LGSLVENNER_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.793652	1129.57275	1.906	0.0010784	1.2024	0.00068028	3.1083	0.0017587	565.794120355877	4.7514	0.23942	4.7514	4.6716	4.911	0	615	52	0.912521036363781	0.0344769526882287	0.912521036363781	369.958879104025	0	13.9778199769356						350	28	2	NaN	NaN	NaN	2.5209E-07	1	7514	150.17	91.748	1	216800			11819	21	9958	10216	11819	11819		
LGSQIFVK	8	Unmodified	_LGSQIFVK_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.268553	890.522553	-1.1131	-0.00049673	-1.1886	-0.00053042	-2.3016	-0.0010271	446.268164764057	7.4738	0.16846	7.4738	7.4028	7.5713	0	765	22	0.810730346695089	0.0143012525920645	0.810730346695089	329.752033092348	0	5.81681336738473						159	20	2	NaN	NaN	NaN	0.042335	1	2176	42.835	17.984	1	38597			11820	3196	9959	10217	11820	11820		
LGSSLDWDR	9	Unmodified	_LGSSLDWDR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.756538	1047.49852	0.50532	0.00026517	0.56361	0.00029576	1.0689	0.00056093	524.756609013534	8.4761	0.22168	8.4761	8.4051	8.6268	0	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	351.342365376348	0	9.91100905167337						511	26	4	NaN	NaN	NaN	0.00014747	1	5404	110.22	94.72	1	263830			11821	858	9960	10218	11821	11821		
LGSTAIGIQTSEGVCLAVEK	20	Unmodified	_LGSTAIGIQTSEGVCLAVEK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.0328	2032.05106	2.5956	0.0026398	-4.1109	-0.0041809	-1.5153	-0.0015411	1017.02898384475	12.884	0.30148	12.884	12.795	13.096	0	192	52	1.1958073123591	0.0338175533264964	1.1958073123591	482.205059906094	0	13.6368085051346						695	35	3	NaN	NaN	NaN	1.8393E-05	1	32191	78.71	67.952	1	168430			11822	872	9961	10219	11822	11822		
LGSTVFVANLDYK	13	Unmodified	_LGSTVFVANLDYK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.882467	1425.75038	2.0359	0.0014534	-1.2345	-0.00088131	0.80138	0.00057209	713.881592246407	12.813	0.2217	12.813	12.76	12.981	0	513	73	0.981336640919867	0.048428051596847	0.981336640919867	396.860307090374	0	19.5846874834898						910	26	4	NaN	NaN	NaN	2.3668E-07	1	16260	131.54	110.46	1	350210			11823	1206	9962	10220	11823	11823		
LGSVSLIPLR	10	Unmodified	_LGSVSLIPLR_			0	0	0	Q96P48	Q96P48	Q96P48	ARAP1	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.834591	1053.65463	-0.67287	-0.00035516	-0.58423	-0.00030838	-1.2571	-0.00066354	527.834030665474	13.265	0.088654	13.265	13.212	13.3	0	690	28	0.86171403876517	0.0183235429829339	0.86171403876517	349.663798069623	0	7.43527358877191						126	11	2	NaN	NaN	NaN	0.0062289	1	5570	46.447	41.907	1	25757			11824	2593	9963	10221	11824	11824		
LGTDESCFNMILATR	15	Unmodified	_LGTDESCFNMILATR_			0	0	0	P20073	P20073	P20073	ANXA7	Annexin A7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.408197	1726.80184	2.5913	0.0022399	-0.58923	-0.00050934	2.002	0.0017306	864.40678320627	14.56	0.14187	14.56	14.506	14.648	-1.7764E-15	339	61	1.09798411722691	0.0400405396622028	1.09798411722691	443.288885037943	0	16.1655582304814						587	17	5	NaN	NaN	NaN	1.8612E-12	1	25228	130.65	114.37	1	147370			11825	777	9964	10222	11825	11825		
LGTLSALDILIK	12	Unmodified	_LGTLSALDILIK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.894846	1255.77514	0.16449	0.00010345	-0.42666	-0.00026832	-0.26217	-0.00016488	628.894374644334	18.178	0.15074	18.178	18.133	18.284	0	555	37	0.953040030838688	0.0242743844973287	0.953040030838688	385.917734171242	0	9.8295088983478						450	18	4	NaN	NaN	NaN	3.979E-11	1	11097	133.76	85.599	1	283890			11826	2175	9965	10223	11826	11826		
LGTQEYLQQLESHMK	15	Unmodified	_LGTQEYLQQLESHMK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.301454	1803.88253	-0.45784	-0.00027576	-0.38682	-0.00023298	-0.84466	-0.00050874	602.635383856866	13.283	0.088644	13.283	13.247	13.336	0	660	31	0.882057989648486	0.0203326589411038	0.882057989648486	533.985533893945	0	12.3091065072441						232	11	4	NaN	NaN	NaN	1.9522E-08	1	27325	147.02	130.73	1	64796			11827	2063	9966	10224	11827	11827		
LGTQEYLQQLESHMK	15	Unmodified	_LGTQEYLQQLESHMK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.948543	1803.88253	1.3219	0.0011936	0.59988	0.00054166	1.9218	0.0017353	903.451123089138	13.283	0.079782	13.283	13.256	13.336	0	183	25	1.20177511391933	0.0159130462953256	1.20177511391933	485.027258836389	0	6.42238396765163						190	10	4	NaN	NaN	NaN	0.0002134	1	27326	51.829	50.558	1	38222			11828	2063	9966	10224	11828	11828		
LGTQPYFFNK	10	Unmodified	_LGTQPYFFNK_			0	0	0	O75431	O75431	O75431	MTX2	Metaxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.813856	1213.61316	0.80809	0.00049117	2.4411	0.0014837	3.2492	0.0019749	607.813794211764	10.277	0.30147	10.277	10.099	10.401	0	579	55	0.936845902828289	0.0364468926238521	0.936845902828289	379.50348051073	0	14.7641384381311						525	35	3	NaN	NaN	NaN	0.070627	1	9834	30.593	21.079	1	133330			11829	333	9967	10225	11829	11829		
LGTVYEK	7	Unmodified	_LGTVYEK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	405.223811	808.433069	-1.1688	-0.00047362	0.46441	0.00018819	-0.70437	-0.00028543	405.224095198805	3.3503	0.15074	3.3503	3.306	3.4567	0	834	16	0.763668499782291	0.0102465159431113	0.763668499782291	311.088681786485	0	4.1740298814936						113	18	2	NaN	NaN	NaN	0.07075	1	1069	38.322	20.628	1	26806			11830	450	9968	10226	11830	11830		
LGTYMGHTGAVWCVDADWDTK	21	Unmodified	_LGTYMGHTGAVWCVDADWDTK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	795.02091	2382.0409	1.1725	0.00093212	-0.61822	-0.0004915	0.55423	0.00044062	795.354822279117	13.567	0.15962	13.567	13.531	13.691	0	564	25	0.946969335010767	0.0161918857668037	0.946969335010767	572.220166504512	0	9.78418542919042						366	19	5	NaN	NaN	NaN	3.6793E-11	1	36262	129.53	120.4	1	65993			11831	1655	9969	10227	11831	11831		
LGVCFDVPTASVTEIQEK	18	Unmodified	_LGVCFDVPTASVTEIQEK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.000973	1991.98739	1.0939	0.0010907	0.75142	0.00074916	1.8454	0.0018398	997.503481713467	14.817	0.15962	14.817	14.764	14.923	0	201	94	1.18983705239708	0.0617181747152831	1.18983705239708	479.863034124877	0	24.8910306834531						1134	19	6	NaN	NaN	NaN	5.4302E-14	1	31494	164.56	137.09	1	646640			11832	3011	9970	10228	11832	11832		
LGVDISATK	9	Unmodified	_LGVDISATK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.260925	902.507297	-1.1751	-0.00053143	-1.9834	-0.000897	-3.1584	-0.0014284	452.260154460444	6.7909	0.16847	6.7909	6.7466	6.9151	0	798	34	0.788241307691771	0.0225078287031693	0.788241307691771	320.540326378373	0	9.15286561130534						289	20	3	NaN	NaN	NaN	0.011621	1	2380	42.075	18.499	1	97456			11833	3036	9971	10229	11833	11833		
LGVDLDAQTWR	11	Unmodified	_LGVDLDAQTWR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.330402	1272.64625	1.0783	0.00068722	-0.20972	-0.00013366	0.86855	0.00055356	637.329637922138	12.272	0.25719	12.272	12.157	12.414	0	531	40	0.969216233931596	0.0262772407481359	0.969216233931596	392.411427228682	0	10.6389979703285						469	30	4	NaN	NaN	NaN	5.0509E-05	1	11573	107.08	80.622	1	154830			11834	801	9972	10230	11834	11834		
LGVEFDETTADDRK	14	Unmodified	_LGVEFDETTADDRK_			0	0	1	P05413	P05413	P05413	FABP3	Fatty acid-binding protein, heart	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.58977	1594.74748	-0.48885	-0.00026036	0.42183	0.00022466	-0.067026	-3.5698E-05	532.590060779656	7.128	0.16848	7.128	7.0747	7.2432	0	738	25	0.829104889055312	0.0163227098451795	0.829104889055312	502.429719309957	0	9.89140775087662						290	20	4	NaN	NaN	NaN	1.1917E-05	1	21421	84.309	65.802	1	88823			11835	531	9973	10231	11835	11835		
LGVENCYFPMFVSQSALEK	19	Unmodified	_LGVENCYFPMFVSQSALEK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.02921	2218.04386	0.92897	0.0010312	-0.15726	-0.00017456	0.77171	0.00085662	1110.5298195629	17.637	0.11524	17.637	17.583	17.699	0	102	88	1.25537494996371	0.0574913362000642	1.25537494996371	505.937327498662	0	23.1699804048411						733	14	4	NaN	NaN	NaN	4.6308E-05	1	34875	74.733	72.343	1	154630			11836	565	9974	10232	11836	11836		
LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK	35	Unmodified	_LGVHPLSCHGWVLGEHGDSSVPVWSGMNVAGVSLK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	917.957974	3667.80279	1.9495	0.0017896	0.06383	5.8594E-05	2.0133	0.0018482	918.459244732425	15.615	0.31036	15.615	15.5	15.81	0	261	400	1.14997238118939	0.267618563396417	1.14997238118939	924.630398181246	0	215.177566767294						5532	36	8	NaN	NaN	NaN	8.7642E-23	1	38710	134.31	119.15	1	2282800			11837	471	9975	10233	11837	11837		
LGVIEDHSNR	10	Unmodified	_LGVIEDHSNR_			0	0	0	P14625;Q58FF3	P14625	P14625	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	380.531638	1138.57309	0.21011	7.9953E-05	0.3697	0.00014068	0.57981	0.00022064	380.532076512007	3.3947	0.47891	3.3947	3.3503	3.8292	0	894	40	0.722622390967862	0.0267116113537523	0.722622390967862	439.407288543653	0	16.242614212194						810	55	4	NaN	NaN	NaN	0.00050726	1	7757	91.783	71.124	1	788290			11838	700	9976	10234	11838	11838		
LGVIEDHSNR	10	Unmodified	_LGVIEDHSNR_			0	0	0	P14625;Q58FF3	P14625	P14625	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.293819	1138.57309	2.1364	0.0012183	0.032751	1.8677E-05	2.1691	0.001237	570.293914653004	3.3947	0.30158	3.3947	3.3503	3.6519	0	612	67	0.914549654013882	0.0446327077092752	0.914549654013882	370.745994349376	0	18.0934928219099						730	35	4	NaN	NaN	NaN	2.1796E-07	1	7758	154.28	135.88	1	316010			11839	700	9976	10234	11839	11839		
LGVLHPDVITK	11	Unmodified	_LGVLHPDVITK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	397.908046	1190.70231	-2.1663	-0.000862	0.9822	0.00039082	-1.1841	-0.00047118	397.908350442965	7.9261	0.10639	7.9261	7.8906	7.997	0	807	28	0.782101955086014	0.018420624064141	0.782101955086014	475.326438165662	0	11.1952278961301						164	13	3	NaN	NaN	NaN	0.049129	1	9193	16.992	14.833	1	51721			11840	3036	9977	10235	11840	11840		
LGVLYWK	7	Unmodified	_LGVLYWK_			0	0	0	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.760364	877.506175	-3.2622	-0.0014346	0.078231	3.4403E-05	-3.184	-0.0014002	439.76038655554	12.165	0.16851	12.165	12.103	12.272	0	795	28	0.790287188799094	0.0184129317501174	0.790287188799094	321.509461975438	0	7.49086137833831						311	20	3	NaN	NaN	NaN	0.057849	1	1979	39.761	25.226	1	122310			11841	2757	9978	10236	11841	11841		
LGVNNISGIEEVNMFTNQGTVIHFNNPK	28	Unmodified	_LGVNNISGIEEVNMFTNQGTVIHFNNPK_			0	0	0	P20290	P20290	P20290	BTF3	Transcription factor BTF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1029.51698	3085.52912	1.5421	0.0015876	0.56252	0.00057913	2.1046	0.0021667	1029.85191831803	16.644	0.15964	16.644	16.608	16.768	0	384	109	1.06790610341098	0.0722919023511401	1.06790610341098	644.444267659981	0	43.6256539031109						1396	19	6	NaN	NaN	NaN	0.000456	1	38334	23.308	22.089	1	436060			11842	778	9979	10237	11842	11842		
LGVQDLFNSSK	11	Unmodified	_LGVQDLFNSSK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.319502	1206.62445	0.6532	0.00039474	-0.79354	-0.00047955	-0.14034	-8.4811E-05	604.319220166826	13.3	0.19511	13.3	13.221	13.416	0	588	43	0.93076847747433	0.0283672188304905	0.93076847747433	377.066165909497	0	11.4919216763266						614	23	4	NaN	NaN	NaN	2.6617E-11	1	9644	178.95	124.51	1	403910			11843	916	9980	10238	11843	11843		
LGVTNTIISHYDGR	14	Unmodified	_LGVTNTIISHYDGR_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.938845	1544.79471	-0.14019	-7.2328E-05	9.4206	0.0048604	9.2804	0.0047881	515.943507729696	9.2923	0.23944	9.2923	9.2125	9.4519	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	516.163427356333	0	12.348804853982						501	28	5	NaN	NaN	NaN	8.193E-06	1	19888	119.94	90.18	1	269140			11844	1077	9981	10239	11844	11844		
LGWSIGPNHLIK	12	Unmodified	_LGWSIGPNHLIK_			0	0	0	Q6YP21	Q6YP21	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	445.590828	1333.75066	-2.0089	-0.00089513	-0.36931	-0.00016456	-2.3782	-0.0010597	445.590706255882	11.589	0.088753	11.589	11.553	11.642	0	861	28	0.745211914437924	0.018464305033006	0.745211914437924	452.350356402442	0	11.2079997656819						140	11	3	NaN	NaN	NaN	0.069995	1	13407	32.14	29.981	1	30774			11845	2098	9982	10240	11845	11845		
LGWSQPLGNLQAPLGYDK	18	Unmodified	_LGWSQPLGNLQAPLGYDK_			0	0	0	Q9UBL3	Q9UBL3	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.012532	1956.01051	1.0781	0.0010555	-2.0009	-0.0019589	-0.92276	-0.0009034	979.512083799399	15.961	0.11526	15.961	15.908	16.023	0	213	49	1.18187287897418	0.0318698317538761	1.18187287897418	476.711744268521	0	12.8547861239707						374	14	3	NaN	NaN	NaN	0.0015061	1	30825	61.23	49.211	1	89007			11846	3178	9983	10241	11846	11846		
LGWVRPDLGELSK	13	Unmodified	_LGWVRPDLGELSK_			0	0	1	P51970	P51970	P51970	NDUFA8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.608548	1468.80381	-1.4903	-0.00073114	-0.43133	-0.00021161	-1.9216	-0.00094275	490.608310893162	12.201	0.1419	12.201	12.157	12.298	0	813	64	0.778007628350577	0.0429814748995514	0.778007628350577	471.812708872304	0	26.0655620391247						680	17	4	NaN	NaN	NaN	0.00034238	1	17558	79.889	64.01	1	318620			11847	1203	9984	10242	11847	11847		
LGYAGNTEPQFIIPSCIAIK	20	Unmodified	_LGYAGNTEPQFIIPSCIAIK_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.57464	2191.13473	0.14676	0.00016094	0.1812	0.0001987	0.32796	0.00035963	1097.0763561915	16.847	0.16852	16.847	16.794	16.963	0	123	64	1.24149774378079	0.0416601778008276	1.24149774378079	500.382825839463	0	16.791039369487						578	20	2	NaN	NaN	NaN	0.0014559	1	34578	69.201	60.833	1	232270			11848	1330	9985	10243	11848	11848		
LGYEEHIPGQTR	12	Unmodified	_LGYEEHIPGQTR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.237002	1398.68918	-0.48824	-0.00022812	-0.92756	-0.00043339	-1.4158	-0.00066151	467.236291732537	5.6292	0.1242	5.6292	5.576	5.7002	0	816	28	0.775960037304758	0.0184308879834895	0.775960037304758	470.79074435677	0	11.1823947829099						239	15	4	NaN	NaN	NaN	0.012139	1	15404	35.33	26.352	1	68561			11849	307	9986	10244	11849	11849		
LGYEEHIPGQTR	12	Unmodified	_LGYEEHIPGQTR_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.351865	1398.68918	2.5688	0.0017991	-1.5414	-0.0010795	1.0274	0.00071958	700.350711775341	5.6203	0.14193	5.6203	5.5849	5.7268	0	438	46	1.03173026378327	0.0301819168183546	1.03173026378327	417.317439407398	0	12.2080748090653						355	17	3	NaN	NaN	NaN	5.4675E-05	1	15406	85.622	72.448	1	91183			11850	307	9986	10244	11850	11850		
LGYFLALTGFR	11	Unmodified	_LGYFLALTGFR_			0	0	0	Q6NVY1	Q6NVY1	Q6NVY1	HIBCH	3-hydroxyisobutyryl-CoA hydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.353148	1256.69174	-0.12896	-8.116E-05	-0.15674	-9.8648E-05	-0.2857	-0.00017981	629.353604692723	18.045	0.062097	18.045	18.018	18.08	0	573	19	0.940896116921038	0.0121472776321595	0.940896116921038	380.997234414209	0	4.9187993236269						111	8	3	NaN	NaN	NaN	0.05592	1	11119	33.723	24.96	1	20248			11851	2048	9987	10245	11851	11851		
LGYFSVDPDSHQGK	14	Unmodified	_LGYFSVDPDSHQGK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.247567	1548.72087	-0.42221	-0.00021839	-0.075087	-3.8839E-05	-0.49729	-0.00025722	517.24752713472	8.2632	0.18631	8.2632	8.1922	8.3785	0	759	70	0.814815566123307	0.0470094743874175	0.814815566123307	493.896689993356	0	28.4945756605235						549	22	4	NaN	NaN	NaN	0.001411	1	19992	77.358	67.108	1	149710			11852	1101	9988	10246	11852	11852		
LGYFSVDPDSHQGK	14	Unmodified	_LGYFSVDPDSHQGK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.367712	1548.72087	2.2815	0.001769	0.33005	0.00025591	2.6116	0.0020249	775.367988618476	8.2632	0.17745	8.2632	8.2011	8.3785	0	378	49	1.07192009927972	0.032111976565327	1.07192009927972	433.162102817129	0	12.9764254854425						490	21	4	NaN	NaN	NaN	0.0018445	1	19993	64.906	58.878	1	118200			11853	1101	9988	10246	11853	11853		
LGYWNQQMVPIK	12	Unmodified	_LGYWNQQMVPIK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.887029	1475.75951	1.1975	0.00088483	-2.0644	-0.0015253	-0.86684	-0.00064049	738.886026478601	13.256	0.15959	13.256	13.176	13.336	0	432	49	1.035754240522	0.0322007138420592	1.035754240522	418.730813717495	0	13.0179830135904						516	19	4	NaN	NaN	NaN	4.8586E-05	1	17772	118.06	105.46	1	147640			11854	69	9989	10247	11854	11854		
LHAEFAAER	9	Unmodified	_LHAEFAAER_			0	0	0	Q9H773	Q9H773	Q9H773	DCTPP1	dCTP pyrophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.267073	1042.51959	1.9355	0.0010109	-2.4179	-0.0012628	-0.48241	-0.00025195	522.265603208736	3.9622	0.24825	3.9622	3.8381	4.0864	4.4409E-16	678	43	0.869855008346864	0.0284854887682705	0.869855008346864	353.015855665923	0	11.560350972404						341	29	3	NaN	NaN	NaN	0.052595	1	5280	23.053	16.291	1	70435			11855	2912	9990	10248	11855	11855		
LHAVNAEECNVLQGR	15	Unmodified	_LHAVNAEECNVLQGR_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.423027	1708.8315	3.0076	0.0025727	-2.7578	-0.0023591	0.24971	0.00021361	855.420846272586	6.6047	0.14189	6.6047	6.5693	6.7111	0	339	52	1.09798411722691	0.0340602471110185	1.09798411722691	443.326013844405	0	13.7522878021401						562	17	4	NaN	NaN	NaN	1.1356E-11	1	24720	128.57	98.813	1	192720			11856	341	9991	10249	11856	11856		
LHAVNAEECNVLQGR	15	Unmodified	_LHAVNAEECNVLQGR_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.617777	1708.8315	-0.27342	-0.00015602	0.65928	0.0003762	0.38586	0.00022018	570.952555377015	6.6047	0.12416	6.6047	6.5693	6.6934	0	747	109	0.822982596624503	0.07340127222881	0.822982596624503	498.433240927965	0	44.4549303415396						530	15	4	NaN	NaN	NaN	1.6847E-08	1	24721	144.27	132.25	1	169420			11857	341	9991	10249	11857	11857		
LHCESESFK	9	Unmodified	_LHCESESFK_			0	0	0	P52434	P52434	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.755681	1135.49681	1.2926	0.00073515	1.3687	0.00077847	2.6613	0.0015136	568.756671338149	2.57	0.12413	2.57	2.5523	2.6764	0	654	25	0.886123392477847	0.0162593562180621	0.886123392477847	359.23401249568	0	6.59153547281733						124	15	2	NaN	NaN	NaN	0.021448	1	7675	36.211	32.866	1	24193			11858	1211	9992	10250	11858	11858		
LHCFQLTVTPDEGYYQGGK	19	Unmodified	_LHCFQLTVTPDEGYYQGGK_			0	0	0	Q969M7	Q969M7	Q969M7	UBE2F	NEDD8-conjugating enzyme UBE2F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.349244	2212.0259	0.67704	0.00049989	0.87437	0.00064559	1.5514	0.0011455	738.684304891452	11.154	0.070942	11.154	11.11	11.181	0	606	103	0.918606045818476	0.0688823530687102	0.918606045818476	555.328472003499	0	41.6417157842344						492	9	4	NaN	NaN	NaN	4.2473E-05	1	34809	53.051	49.798	1	86165			11859	2460	9993	10251	11859	11859		
LHDAFFK	7	Unmodified	_LHDAFFK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.231971	876.449388	-1.5353	-0.00067437	0.0072188	3.1707E-06	-1.5281	-0.0006712	439.232179194652	5.7534	0.31026	5.7534	5.6471	5.9573	0	768	40	0.808687310729125	0.0265631681667801	0.808687310729125	329.00122066297	0	10.8067910001789						597	36	4	NaN	NaN	NaN	0.02927	1	1958	66.087	48.393	1	196920			11860	1667	9994	10252	11860	11860		
LHDAIVEVVTCLLR	14	Unmodified	_LHDAIVEVVTCLLR_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.63963	1636.89706	-1.1001	-0.00060134	0.74638	0.000408	-0.35369	-0.00019334	546.640625183	19.011	0.062012	19.011	18.984	19.046	0	666	19	0.877991458330206	0.0122012876869253	0.877991458330206	531.93668842995	0	7.3922274586904						99	8	3	NaN	NaN	NaN	0.011177	1	22696	56.202	47.728	1	19878			11861	79	9995	10253	11861	11861		
LHDETLTYLNQGQSYEIR	18	Unmodified	_LHDETLTYLNQGQSYEIR_			0	0	0	Q12800;Q9NZI7	Q12800	Q12800	TFCP2;UBP1	Alpha-globin transcription factor CP2;Upstream-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.358797	2179.05456	0.86974	0.00063262	-0.28626	-0.00020821	0.58349	0.0004244	727.692979540382	10.676	0.088663	10.676	10.64	10.729	0	594	46	0.926715457081489	0.0303955552959029	0.926715457081489	560.283747552555	0	18.3768766345632						316	11	4	NaN	NaN	NaN	4.4551E-05	1	34439	96.313	89.323	1	83430			11862	1597	9996	10254	11862	11862		
LHDINAQLVEDQGFLDTLK	19	Unmodified	_LHDINAQLVEDQGFLDTLK_			0	0	0	Q10567	Q10567	Q10567	AP1B1	AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.711059	2168.11135	-0.12037	-8.7115E-05	-1.1806	-0.00085441	-1.301	-0.00094153	724.044359705041	15.225	0.079786	15.225	15.198	15.278	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	549.265999810747	0	9.8155860358753						202	10	5	NaN	NaN	NaN	1.2614E-05	1	34286	73.305	60.929	1	48477			11863	1587	9997	10255	11863	11863		
LHDINAQLVEDQGFLDTLK	19	Unmodified	_LHDINAQLVEDQGFLDTLK_			0	0	0	Q10567	Q10567	Q10567	AP1B1	AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.711059	2168.11135	0.61287	0.00044354	0.43589	0.00031546	1.0488	0.000759	724.046079455387	15.234	0.11524	15.234	15.198	15.313	0	522	31	0.975277694896658	0.0202034745303079	0.975277694896658	589.662867786885	0	12.2152273071958						211	14	4	NaN	NaN	NaN	0.0012428	1	34287	70.552	65.47	1	42061			11864	1587	9997	10255	11864	11864		
LHDINAQMVEDQGFLDSLR	19	Unmodified	_LHDINAQMVEDQGFLDSLR_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.360032	2200.05827	-0.45683	-0.00033548	-0.58982	-0.00043314	-1.0466	-0.00076862	734.693976973035	14.879	0.10641	14.879	14.834	14.941	0	615	55	0.912521036363781	0.0365277897935211	0.912521036363781	551.668595095483	0	22.0830355403461						536	13	5	NaN	NaN	NaN	1.4711E-14	1	34677	150.93	139.25	1	170720			11865	1423	9998	10256	11865	11865		
LHDINAQMVEDQGFLDSLR	19	Unmodified	_LHDINAQMVEDQGFLDSLR_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1101.03641	2200.05827	0.1198	0.0001319	-0.55799	-0.00061437	-0.4382	-0.00048247	1101.53584523505	14.87	0.097544	14.87	14.799	14.897	0	120	55	1.2434810169581	0.0356867011501116	1.2434810169581	501.169374451254	0	14.3830757749579						284	12	4	NaN	NaN	NaN	0.018632	1	34678	28.664	23.582	1	54310			11866	1423	9998	10256	11866	11866		
LHDLMHFNTLNNIDVIK	17	Unmodified	_LHDLMHFNTLNNIDVIK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.691053	2036.05133	0.34634	0.00023541	-0.85275	-0.0005796	-0.5064	-0.0003442	680.024865345166	13.673	0.15959	13.673	13.637	13.797	0	627	58	0.90440375274676	0.038565133185127	0.90440375274676	547.037273661506	0	23.3264902449957						773	19	6	NaN	NaN	NaN	3.1012E-20	1	32266	190.06	159.02	1	397160			11867	1098	9999	10257	11867	11867		
LHDLMHFNTLNNIDVIK	17	Unmodified	_LHDLMHFNTLNNIDVIK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.03294	2036.05133	1.329	0.0013543	-1.3005	-0.0013252	0.028574	2.9118E-05	1019.53389001534	13.673	0.07093	13.673	13.646	13.717	0	165	49	1.21370334790578	0.0317999037994188	1.21370334790578	489.415038338042	0	12.8230272776233						297	9	4	NaN	NaN	NaN	0.057823	1	32267	14.393	7.5376	1	79635			11868	1098	9999	10257	11868	11868		
LHDLMHFNTLNNIDVIK	17	Oxidation (M)	_LHDLM(Oxidation (M))HFNTLNNIDVIK_	LHDLM(1)HFNTLNNIDVIK	LHDLM(96)HFNTLNNIDVIK	0	1	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.022692	2052.04625	-0.21273	-0.00014573	0.13246	9.0739E-05	-0.080273	-5.4989E-05	685.35667084926	11.624	0.12413	11.624	11.589	11.713	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	547.008418988418	0	12.277299878138						302	15	4	NaN	NaN	NaN	7.8772E-07	1	32568	96.27	88.695	1	68941			11869	1098	9999	10258	11869	11869	391	
LHDLQLLGK	9	Unmodified	_LHDLQLLGK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.811116	1035.60768	1.0679	0.00055405	-1.6328	-0.0008471	-0.56486	-0.00029306	518.810074022314	7.9615	0.1419	7.9615	7.9172	8.0591	0	654	31	0.886123392477847	0.0203213763976985	0.886123392477847	359.64938140492	0	8.2478021828224						216	17	2	NaN	NaN	NaN	0.011223	1	5137	58.916	40.579	1	109410		+	11870	22	10000	10259	11870	11870		
LHDMLGPHMLR	11	Unmodified	_LHDMLGPHMLR_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.561887	1318.66383	-1.5881	-0.00069966	1.3168	0.00058015	-0.27127	-0.00011951	440.562731415917	7.1634	0.15961	7.1634	7.1102	7.2698	0	747	22	0.822982596624503	0.0142893229320042	0.822982596624503	499.616373120321	0	8.67476387339735						276	19	4	NaN	NaN	NaN	0.0041104	1	12932	49.96	44.094	1	70957			11871	1776	10001	10260	11871	11871		
LHDSSGSQVGTGFK	14	Unmodified	_LHDSSGSQVGTGFK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.34678	1418.67901	2.3782	0.0016893	-3.785	-0.0026887	-1.4068	-0.00099932	710.343643516922	3.5012	0.14201	3.5012	3.439	3.581	0	522	31	0.975277694896658	0.0202034745303079	0.975277694896658	394.428918903544	0	8.17083653074729						160	17	3	NaN	NaN	NaN	0.00025648	1	16050	68.548	51.078	1	30761			11872	1151	10002	10261	11872	11872		
LHDVEHVLIDVGTGYYVEK	19	Unmodified	_LHDVEHVLIDVGTGYYVEK_			0	0	0	Q99471	Q99471	Q99471	PFDN5	Prefoldin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.56004	2185.10553	0.33102	0.000362	0.58195	0.0006364	0.91298	0.00099839	1094.06281132217	13.292	0.070927	13.292	13.265	13.336	0	81	61	1.2692388538616	0.0396030331440058	1.2692388538616	511.572708293299	0	15.9621893550366						289	9	3	NaN	NaN	NaN	0.00081671	1	34524	43.518	41.671	1	58144			11873	2642	10003	10262	11873	11873		
LHDVNSDGFLDEQELEALFTK	21	Unmodified	_LHDVNSDGFLDEQELEALFTK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	807.392055	2419.15433	0.855	0.00069032	-0.81902	-0.00066127	0.035979	2.9049E-05	807.725795015824	18.328	0.062046	18.328	18.302	18.364	0	516	37	0.979317271586824	0.024237464198638	0.979317271586824	591.714250960301	0	14.6445420596287						229	8	4	NaN	NaN	NaN	9.5827E-06	1	36439	60.14	59.329	1	58443			11874	1467	10004	10263	11874	11874		
LHEEEIQELQAQIQEQHVQIDVDVSK	26	Unmodified	_LHEEEIQELQAQIQEQHVQIDVDVSK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	772.141369	3084.53637	1.134	0.0008756	0.81329	0.00062797	1.9473	0.0015036	772.392682942155	14.267	0.079813	14.267	14.24	14.32	0	498	19	0.991429299781895	0.0121070050888834	0.991429299781895	797.724210352812	0	9.74154291828131						148	10	4	NaN	NaN	NaN	8.5849E-05	1	38332	64.983	60.742	1	28688			11875	588	10005	10264	11875	11875		
LHEEEPPQNMK	11	Unmodified	_LHEEEPPQNMK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.21521	1350.6238	0.51708	0.00023331	-0.11544	-5.209E-05	0.40164	0.00018122	451.215466914166	3.0222	0.079788	3.0222	2.9868	3.0666	0	888	19	0.726732155490709	0.0123275740709815	0.726732155490709	441.076538370649	0	7.48199134530495						72	10	2	NaN	NaN	NaN	0.067918	1	13897	14.763	12.792	1	13577			11876	2796	10006	10265	11876	11876		
LHEEEPPQNMK	11	Unmodified	_LHEEEPPQNMK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.319177	1350.6238	2.6012	0.0017593	-1.4592	-0.00098692	1.142	0.00077234	676.318520318741	3.0134	0.22166	3.0134	2.9424	3.1641	0	567	40	0.944945209309785	0.0263245737571987	0.944945209309785	382.347481444695	0	10.6515535260735						317	26	2	NaN	NaN	NaN	0.0057291	1	13898	47.561	41.298	1	65898			11877	2796	10006	10265	11877	11877		
LHELTVMQDR	10	Unmodified	_LHELTVMQDR_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.31898	1240.62341	2.2651	0.0014074	1.1299	0.00070205	3.3951	0.0021094	621.319829300302	5.9929	0.16854	5.9929	5.9396	6.1081	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.701640534296	0	8.18554477120688						301	20	3	NaN	NaN	NaN	5.5355E-05	1	10634	107.08	95.011	1	79065			11878	944	10007	10266	11878	11878		
LHFFMPGFAPLTAR	14	Unmodified	_LHFFMPGFAPLTAR_			0	0	0	Q13509	Q13509	Q13509	TUBB3	Tubulin beta-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.61839	1603.83334	-1.3766	-0.00073734	-0.62935	-0.00033709	-2.006	-0.0010744	535.618053900709	16.395	0.13301	16.395	16.351	16.484	0	744	91	0.82502364452135	0.0611761992946712	0.82502364452135	499.932172275318	0	37.0703923554536						785	16	4	NaN	NaN	NaN	0.0013931	1	21717	72.365	71.402	1	230770			11879	1675	10008	10267	11879	11879		
LHFFMPGFAPLTSR	14	Unmodified	_LHFFMPGFAPLTSR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.950028	1619.82825	-0.85157	-0.00046066	-0.13312	-7.2011E-05	-0.98469	-0.00053267	540.950076962757	16.271	0.75375	16.271	16.182	16.936	0	771	202	0.806643990516186	0.136636932202844	0.806643990516186	488.753539870013	0	82.7896631925365						6390	86	6	NaN	NaN	NaN	7.6774E-08	1	22188	170.85	151.53	1	9104400			11880	1449;560;512;2761;2745;1936	10009	10268	11880	11880		
LHFFMPGFAPLTSR	14	Unmodified	_LHFFMPGFAPLTSR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.921403	1619.82825	2.1455	0.0017398	1.276	0.0010348	3.4215	0.0027746	810.922941208354	16.28	0.37243	16.28	16.147	16.519	0	366	82	1.07994477139643	0.0541255369499021	1.07994477139643	436.235076953411	0	21.8635789550185						2854	43	6	NaN	NaN	NaN	5.8745E-08	1	22190	130.79	102.14	1	2673600			11881	1449;560;512;2761;2745;1936	10009	10268	11881	11881		
LHFFMPGFAPLTSR	14	Unmodified	_LHFFMPGFAPLTSR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.921403	1619.82825	1.7811	0.0014443	2.4039	0.0019494	4.185	0.0033937	810.924426455254	16.599	0.15964	16.599	16.573	16.732	0	345	22	1.09397730668811	0.0140228717271516	1.09397730668811	441.903403431962	0	5.66442713595046						115	19	2	NaN	NaN	NaN	0.051536	1	22191	21.15	18.435	1	22779			11882	1449;560;512;2761;2745;1936	10009	10268	11882	11882		
LHFFMPGFAPLTSR	14	Oxidation (M)	_LHFFM(Oxidation (M))PGFAPLTSR_	LHFFM(1)PGFAPLTSR	LHFFM(88)PGFAPLTSR	0	1	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.281666	1635.82317	-1.6524	-0.00090265	-0.59727	-0.00032628	-2.2496	-0.0012289	546.281466679585	14.036	0.28375	14.036	13.957	14.24	0	780	64	0.800512323802183	0.0429396119703519	0.800512323802183	484.998138109664	0	26.0153794483224						1123	33	5	NaN	NaN	NaN	0.00014545	1	22666	87.942	68.385	1	678750			11883	1449;560;512;2761;2745;1936	10009	10269	11883	11883	89	
LHFFMPGFAPLTSR	14	Oxidation (M)	_LHFFM(Oxidation (M))PGFAPLTSR_	LHFFM(1)PGFAPLTSR	LHFFM(62)PGFAPLTSR	0	1	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.281666	1635.82317	-0.83224	-0.00045464	-0.92278	-0.0005041	-1.755	-0.00095874	546.281188272939	14.036	0.11527	14.036	13.983	14.099	0	708	49	0.849494101904619	0.0326091497098583	0.849494101904619	514.674223788259	0	19.7565689716829						342	14	3	NaN	NaN	NaN	0.0051945	1	22667	62.271	50.916	1	75713			11884	1449;560;512;2761;2745;1936	10009	10269	11884	11884	89	
LHFFMPGFAPLTSR	14	Oxidation (M)	_LHFFM(Oxidation (M))PGFAPLTSR_	LHFFM(1)PGFAPLTSR	LHFFM(75)PGFAPLTSR	0	1	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.918861	1635.82317	2.0062	0.001643	-0.52143	-0.00042701	1.4848	0.0012159	818.91866481957	14.028	0.25715	14.028	13.895	14.152	0	381	97	1.06991323971056	0.0641532271439396	1.06991323971056	432.147093048849	0	25.9120362202974						1926	30	5	NaN	NaN	NaN	0.0068929	1	22669	75.474	63.456	1	932680			11885	1449;560;512;2761;2745;1936	10009	10269	11885	11885	89	
LHFHNLVK	8	Unmodified	_LHFHNLVK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.292894	1006.57123	0.97706	0.00049273	-1.1965	-0.00060339	-0.21944	-0.00011066	504.292668901763	4.5563	0.13299	4.5563	4.5031	4.6361	0	672	28	0.873923798053065	0.0183057433537801	0.873923798053065	354.832145411816	0	7.43253153427173						208	16	3	NaN	NaN	NaN	0.059481	1	4443	49.058	38.23	1	56039			11886	92	10010	10270	11886	11886		
LHFLAPSEEDEMNDK	15	Unmodified	_LHFLAPSEEDEMNDK_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.269931	1773.78796	-0.85104	-0.00050405	0.00247	1.4629E-06	-0.84857	-0.00050258	592.604204884659	8.7422	0.079901	8.7422	8.7156	8.7955	0	741	25	0.827064408645228	0.016324979319214	0.827064408645228	500.75792054547	0	9.88419113600622						173	10	3	NaN	NaN	NaN	2.3687E-06	1	26499	144.27	140.29	1	38579			11887	2254	10011	10271	11887	11887		
LHFLMTGYTPLTTDQSVASVR	21	Unmodified	_LHFLMTGYTPLTTDQSVASVR_			0	0	0	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.735099	2336.18347	0.90034	0.00070203	-2.2679	-0.0017684	-1.3676	-0.0010663	780.06800798317	14.506	0.062078	14.506	14.48	14.542	0	555	46	0.953040030838688	0.0303408835335462	0.953040030838688	575.954006464534	0	18.3360119883334						181	8	3	NaN	NaN	NaN	9.4652E-06	1	35942	66.509	57.378	1	42566			11888	815	10012	10272	11888	11888		
LHGGTPANFLDVGGGATVHQVTEAFK	26	Unmodified	_LHGGTPANFLDVGGGATVHQVTEAFK_			0	0	0	Q9P2R7	Q9P2R7	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.113626	2622.31905	2.4285	0.0021252	0.051211	4.4815E-05	2.4797	0.00217	875.447497798355	13.832	0.13299	13.832	13.806	13.939	0	216	82	1.17988115188462	0.053843218853483	1.17988115188462	712.581703042428	0	32.5182689176927						499	16	5	NaN	NaN	NaN	7.88E-14	1	37327	90.828	88.98	1	115210			11889	3164	10013	10273	11889	11889		
LHGLDEEAEQK	11	Unmodified	_LHGLDEEAEQK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.809499	1267.60444	2.2356	0.0014192	-1.5819	-0.0010042	0.65369	0.00041497	634.808244085421	3.3681	0.13309	3.3681	3.3326	3.4657	0	576	40	0.938871150116794	0.0263282200540531	0.938871150116794	380.141697354018	0	10.6600935159343						315	16	4	NaN	NaN	NaN	2.2617E-07	1	11433	117.3	97.066	1	82467			11890	950	10014	10274	11890	11890		
LHGVNINVEASK	12	Unmodified	_LHGVNINVEASK_			0	0	0	Q9BWF3;Q9BQ04	Q9BWF3	Q9BWF3	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.851501	1279.68845	1.5677	0.0010047	-1.4129	-0.00090544	0.15487	9.9251E-05	640.850346900653	5.9041	0.204	5.9041	5.8687	6.0727	0	540	46	0.963152256458504	0.0303198952028392	0.963152256458504	389.933241074505	0	12.2750426282076						233	24	2	NaN	NaN	NaN	0.0002109	1	11755	83.438	62.349	1	91487			11891	2778	10015	10275	11891	11891		
LHICDHFTR	9	Unmodified	_LHICDHFTR_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	400.197713	1197.57131	-0.84405	-0.00033779	-0.90133	-0.00036071	-1.7454	-0.0006985	400.197540154589	5.0174	0.19506	5.0174	4.9731	5.1681	0	855	28	0.749315378969369	0.0184617312654048	0.749315378969369	455.370367777059	0	11.2194752597921						312	23	4	NaN	NaN	NaN	0.0007752	1	9383	94.806	59.875	1	81823			11892	2129	10016	10276	11892	11892		
LHIIEVGTPPTGNQPFPK	18	Unmodified	_LHIIEVGTPPTGNQPFPK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.022909	1944.0469	1.1402	0.00073999	-0.59082	-0.00038346	0.54934	0.00035654	649.356808803434	11.412	0.18628	11.412	11.341	11.527	0	630	136	0.902373728295776	0.0913513225124809	0.902373728295776	545.984126540798	0	55.2724114924313						2290	22	5	NaN	NaN	NaN	0.00042938	1	30609	112.7	104.33	1	946160			11893	1503	10017	10277	11893	11893		
LHISPSNMTNQNTNEYLEK	19	Unmodified	_LHISPSNMTNQNTNEYLEK_			0	0	0	Q13547	Q13547	Q13547	HDAC1	Histone deacetylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.023308	2232.0481	1.1071	0.0008248	0.56414	0.0004203	1.6712	0.0012451	745.358357038039	8.7599	0.1154	8.7599	8.7156	8.831	0	531	37	0.969216233931596	0.0242542357032265	0.969216233931596	585.891269303563	0	14.6616868812724						420	14	5	NaN	NaN	NaN	6.6335E-20	1	35005	169.05	151.16	1	115480			11894	1682	10018	10278	11894	11894		
LHISPSNMTNQNTPEYMEK	19	Unmodified	_LHISPSNMTNQNTPEYMEK_			0	0	0	Q92769	Q92769	Q92769	HDAC2	Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.345394	2233.01435	1.062	0.00079157	0.15111	0.00011263	1.2131	0.0009042	745.680157583992	8.4051	0.088672	8.4051	8.3608	8.4495	0	582	55	0.934820374997243	0.0364519408200378	0.934820374997243	565.09746065713	0	22.0351414500225						460	11	4	NaN	NaN	NaN	1.0303E-14	1	35013	150.85	145.77	1	105200			11895	2431	10019	10279	11895	11895		
LHISQLQHENSILK	14	Unmodified	_LHISQLQHENSILK_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.977411	1658.9104	-0.26231	-0.00014531	0.38546	0.00021353	0.12315	6.8221E-05	553.977864418967	7.5536	0.079747	7.5536	7.527	7.6068	0	675	28	0.871889544407995	0.0183082845696197	0.871889544407995	528.181046355425	0	11.0909563751227						198	10	4	NaN	NaN	NaN	0.0020371	1	23308	58.476	54.23	1	52648			11896	1736	10020	10280	11896	11896		
LHISQLQHENSILK	14	Unmodified	_LHISQLQHENSILK_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.462478	1658.9104	2.2913	0.0019029	-0.9339	-0.00077557	1.3574	0.0011273	830.461654862174	7.5624	0.061995	7.5624	7.527	7.589	-1.7764E-15	273	22	1.14198628764525	0.013980470407166	1.14198628764525	461.204101388006	0	5.6461713777789						122	8	3	NaN	NaN	NaN	1.1111E-05	1	23309	108.91	87.763	1	24615			11897	1736	10020	10280	11897	11897		
LHIVQVVCK	9	Unmodified	_LHIVQVVCK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.320794	1094.62703	1.0422	0.00057144	1.5828	0.00086787	2.6249	0.0014393	548.32176928142	6.2411	0.19512	6.2411	6.1968	6.3919	0	624	43	0.906433495720521	0.028418378530508	0.906433495720521	367.632258614649	0	11.5259561067213						596	23	5	NaN	NaN	NaN	2.4953E-06	1	6583	117.18	96.943	1	628590			11898	71	10021	10281	11898	11898		
LHKPPADSGVDLR	13	Unmodified	_LHKPPADSGVDLR_			0	0	1	O15427	O15427	O15427	SLC16A3	Monocarboxylate transporter 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.924647	1403.75211	0.13503	6.3321E-05	1.5739	0.00073806	1.709	0.00080138	468.92543940434	3.6431	0.17732	3.6431	3.5898	3.7672	0	753	25	0.81889964927511	0.0163363337922245	0.81889964927511	496.825550396451	0	9.91123641946444						322	21	3	NaN	NaN	NaN	0.0053343	1	15587	73.655	62.868	1	106710			11899	175	10022	10282	11899	11899		
LHLEEIR	7	Unmodified	_LHLEEIR_			0	0	0		REV__Q96SN7	REV__Q96SN7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.261259	908.507966	0.10728	4.8842E-05	-0.050378	-2.2935E-05	0.056906	2.5907E-05	455.261145439972	8.2454	0.12419	8.2454	8.21	8.3342	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	349.555658063591	0	7.45161217232499						199	15	3	NaN	NaN	NaN	0.0061936	1	2485	100.67	53.868	1	61595	+		11900	3512	10023	10283	11900	11900		
LHLFPDEYIPEDILK	15	Unmodified	_LHLFPDEYIPEDILK_			0	0	0	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.487827	1840.9611	1.0144	0.00093473	-4.3945	-0.0040494	-3.3801	-0.0031147	921.9839706216	17.184	0.13303	17.184	17.149	17.282	0	219	25	1.17788915118882	0.0159327236441533	1.17788915118882	475.314030867563	0	6.42933767609469						208	16	4	NaN	NaN	NaN	0.0012534	1	28259	47.361	41.974	1	53781			11901	2797	10024	10284	11901	11901		
LHLFPDEYIPEDILK	15	Unmodified	_LHLFPDEYIPEDILK_			0	0	0	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.660977	1840.9611	-1.3112	-0.00080593	0.0091662	5.6341E-06	-1.302	-0.00080029	614.995060229852	17.184	0.10638	17.184	17.14	17.246	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	515.426070831519	0	12.3311641778896						214	13	3	NaN	NaN	NaN	0.03633	1	28260	44.598	33.626	1	42451			11902	2797	10024	10284	11902	11902		
LHLFPDEYIPEDILK	15	Unmodified	_LHLFPDEYIPEDILK_			0	0	0	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.660977	1840.9611	-0.84019	-0.00051643	-0.2549	-0.00015668	-1.0951	-0.00067311	614.995044331685	17.184	0.13301	17.184	17.14	17.273	0	660	34	0.882057989648486	0.0223581674407913	0.882057989648486	533.903564625225	0	13.5332432053398						302	16	4	NaN	NaN	NaN	0.0019049	1	28261	44.598	36.223	1	65170			11903	2797	10024	10284	11903	11903		
LHLGFIEIR	9	Unmodified	_LHLGFIEIR_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.326934	1096.63931	0.49492	0.00027187	-0.71334	-0.00039186	-0.21842	-0.00011998	549.326673579049	14.072	0.2128	14.072	14.019	14.232	0	609	58	0.916577990479294	0.0385437520170938	0.916577990479294	371.738204181963	0	15.6322596724987						681	25	4	NaN	NaN	NaN	3.1412E-06	1	6638	164.53	103.82	1	499740			11904	3372	10025	10285	11904	11904		
LHLGFIQIR	9	Unmodified	_LHLGFIQIR_			0	0	0	Q9NQ29	Q9NQ29	Q9NQ29	LUC7L	Putative RNA-binding protein Luc7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.834926	1095.6553	0.17748	9.7408E-05	0.1167	6.4051E-05	0.29418	0.00016146	548.834973445683	13.221	0.088663	13.221	13.176	13.265	0	603	28	0.920633820089869	0.0182474411105494	0.920633820089869	373.387291766139	0	7.40073031128173						176	11	3	NaN	NaN	NaN	9.5513E-05	1	6611	113.1	93.615	1	45400			11905	2995	10026	10286	11905	11905		
LHLGHTFSLSK	11	Unmodified	_LHLGHTFSLSK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	413.899662	1238.67716	-0.96086	-0.0003977	-1.3868	-0.000574	-2.3477	-0.00097171	413.89907686908	6.9062	0.10639	6.9062	6.8619	6.9683	0	864	85	0.743159753061487	0.0574405497434908	0.743159753061487	451.459021998399	0	34.8943202365551						598	13	3	NaN	NaN	NaN	0.0057841	1	10585	53.517	41.45	1	189050			11906	3161	10027	10287	11906	11906		
LHLGHTFSLSK	11	Unmodified	_LHLGHTFSLSK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.345855	1238.67716	1.7326	0.0010748	0.21043	0.00013054	1.943	0.0012054	620.345983045569	6.9062	0.12413	6.9062	6.8707	6.9949	0	522	34	0.975277694896658	0.0222192115744939	0.975277694896658	394.981786032278	0	8.99865127424306						209	15	3	NaN	NaN	NaN	2.2019E-11	1	10588	140.05	103.84	1	50650			11907	3161	10027	10287	11907	11907		
LHLGIPEAVFVEDVDSFMK	19	Unmodified	_LHLGIPEAVFVEDVDSFMK_			0	0	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.034486	2145.08163	0.77034	0.00055159	-1.3984	-0.0010013	-0.62806	-0.00044971	716.368256504004	19.8	0.062071	19.8	19.782	19.845	0	594	49	0.926715457081489	0.0324421500815294	0.926715457081489	560.339906785774	0	19.6161952557308						256	8	5	NaN	NaN	NaN	3.1454E-05	1	33958	73.891	73.792	1	83068			11908	1349	10028	10288	11908	11908		
LHLGIPEAVFVEDVDSFMK	19	Oxidation (M)	_LHLGIPEAVFVEDVDSFM(Oxidation (M))K_	LHLGIPEAVFVEDVDSFM(1)K	LHLGIPEAVFVEDVDSFM(74)K	0	1	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.366124	2161.07654	-0.42125	-0.00030387	-0.84885	-0.00061233	-1.2701	-0.00091621	721.700124674654	17.912	0.062054	17.912	17.885	17.947	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	551.730977544566	0	11.0404668978965						164	8	4	NaN	NaN	NaN	7.2311E-06	1	34191	73.502	72.231	1	34443			11909	1349	10028	10289	11909	11909	483	
LHLGSTPHNLTDANIHELAR	20	Unmodified	_LHLGSTPHNLTDANIHELAR_			0	0	0	Q9UN37	Q9UN37	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	553.042267	2208.13996	0.93716	0.00051829	1.8059	0.00099875	2.7431	0.001517	553.293817339164	8.7245	0.097571	8.7245	8.6891	8.7866	0	579	28	0.936845902828289	0.0182297522282956	0.936845902828289	755.146242950014	0	14.6941229753451						220	12	5	NaN	NaN	NaN	0.0032344	1	34767	40.53	37.815	1	65766			11910	3291	10029	10290	11910	11910		
LHLIYLINDVLHHCQR	16	Unmodified	_LHLIYLINDVLHHCQR_			0	0	0	Q8IWX8	Q8IWX8	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	511.778185	2043.08363	-1.7172	-0.0008788	0.02425	1.2411E-05	-1.6929	-0.00086639	512.028900661066	16.209	0.070917	16.209	16.165	16.236	0	738	13	0.829104889055312	0.00816135444937449	0.829104889055312	668.638248042667	0	6.58178936431398						81	9	3	NaN	NaN	NaN	0.00012507	1	32408	56.202	54.492	1	13851			11911	2206	10030	10291	11911	11911		
LHLSGIDANPNALFPPVEFPAPR	23	Unmodified	_LHLSGIDANPNALFPPVEFPAPR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.772653	2471.29613	1.0844	0.00089437	-1.1858	-0.00097805	-0.10145	-8.3677E-05	825.106029144737	17.504	0.23055	17.504	17.388	17.619	0	537	151	0.965173861991602	0.101031638976448	0.965173861991602	583.098392123311	0	61.0370717242467						2557	27	5	NaN	NaN	NaN	6.5039E-10	1	36685	111.75	93.946	1	1005700			11912	1127	10031	10292	11912	11912		
LHLVESLLSR	10	Unmodified	_LHLVESLLSR_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.84823	1165.68191	0.67114	0.00039185	-0.048675	-2.8419E-05	0.62247	0.00036343	583.848162459441	11.518	0.13309	11.518	11.456	11.589	0	543	28	0.961130371139249	0.0181994882145681	0.961130371139249	389.520750904889	0	7.37577182897718						215	16	3	NaN	NaN	NaN	3.1662E-07	1	8495	146.03	124.76	1	54653			11913	2013	10032	10293	11913	11913		
LHNEIVYAVEK	11	Unmodified	_LHNEIVYAVEK_			0	0	0	Q63HN8	Q63HN8	Q63HN8	RNF213	E3 ubiquitin-protein ligase RNF213	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.856252	1313.69795	1.1533	0.00075871	-1.2287	-0.00080832	-0.075408	-4.9608E-05	657.856647400634	6.5604	0.070944	6.5604	6.5249	6.5959	0	504	25	0.987393073566096	0.0161471385123466	0.987393073566096	399.636640781426	0	6.53537923858505						101	9	2	NaN	NaN	NaN	0.0063502	1	12774	31.425	20.723	1	27083			11914	2015	10033	10294	11914	11914		
LHNELQSGSLR	11	Unmodified	_LHNELQSGSLR_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.333476	1252.6524	2.5228	0.0015827	-1.9503	-0.0012235	0.57258	0.0003592	627.332253803743	4.0332	0.10645	4.0332	3.9977	4.1041	0	576	28	0.938871150116794	0.0182272273449463	0.938871150116794	380.190595024378	0	7.38101326157232						153	13	3	NaN	NaN	NaN	0.00066522	1	10992	81.099	59.824	1	37719			11915	1968	10034	10295	11915	11915		
LHNLQIK	7	Unmodified	_LHNLQIK_			0	0	0	P42081	P42081	P42081	CD86	T-lymphocyte activation antigen CD86	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.266345	864.518136	-1.4239	-0.00061692	0.17276	7.4853E-05	-1.2511	-0.00054206	433.266542300545	7.4294	0.14192	7.4294	7.3851	7.527	8.8818E-16	765	31	0.810730346695089	0.0204289410933094	0.810730346695089	329.902561666113	0	8.31294896790587						249	17	3	NaN	NaN	NaN	0.021427	1	1779	56.89	5.434	1	92927			11916	1040	10035	10296	11916	11916		
LHNMIVDLDNVVK	13	Unmodified	_LHNMIVDLDNVVK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.941309	1508.8021	-1.5425	-0.00077731	-1.1857	-0.00059754	-2.7282	-0.0013748	503.940732350281	12.972	0.062078	12.972	12.937	12.999	1.7764E-15	831	22	0.76571780291124	0.0143451227380655	0.76571780291124	464.244959092251	0	8.69726535466037						111	8	3	NaN	NaN	NaN	0.048287	1	18766	16.288	15.138	1	23222			11917	1915	10036	10297	11917	11917		
LHNMIVDLDNVVK	13	Unmodified	_LHNMIVDLDNVVK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.408326	1508.8021	2.1361	0.0016136	0.57997	0.00043811	2.7161	0.0020518	755.408400514625	12.963	0.15961	12.963	12.919	13.079	0	366	43	1.07994477139643	0.0280863584131199	1.07994477139643	436.507154255097	0	11.352336442582						690	19	5	NaN	NaN	NaN	1.7284E-05	1	18767	110.44	99.652	1	281470			11918	1915	10036	10297	11918	11918		
LHNQQALSSSIEEGLR	16	Unmodified	_LHNQQALSSSIEEGLR_			0	0	0	Q06587	Q06587	Q06587	RING1	E3 ubiquitin-protein ligase RING1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.460664	1780.90677	2.4123	0.0021505	-1.9235	-0.0017147	0.48888	0.00043581	891.459210433575	8.1567	0.062047	8.1567	8.1124	8.1745	0	294	25	1.12800004657306	0.0159919751771491	1.12800004657306	455.297018842529	0	6.45487439976631						84	8	2	NaN	NaN	NaN	0.00014321	1	26708	58.508	49.702	1	17202			11919	1562	10037	10298	11919	11919		
LHNVLFSILQCHPK	14	Unmodified	_LHNVLFSILQCHPK_			0	0	0	Q14146	Q14146	Q14146	URB2	Unhealthy ribosome biogenesis protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.311737	1704.91338	-0.73541	-0.00041868	-2.1004	-0.0011958	-2.8358	-0.0016145	569.645004476716	13.105	0.097522	13.105	13.061	13.159	0	711	22	0.847456455381371	0.0142655083494234	0.847456455381371	513.265140319127	0	8.63995795677255						199	12	4	NaN	NaN	NaN	8.3763E-06	1	24637	88.24	77.99	1	48749			11920	1726	10038	10299	11920	11920		
LHPEDFPEEDKK	12	Unmodified	_LHPEDFPEEDKK_			0	0	1	O95298	O95298	O95298	NDUFC2	NADH dehydrogenase [ubiquinone] 1 subunit C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.240301	1482.69907	-0.15206	-7.5307E-05	0.082967	4.1088E-05	-0.069095	-3.4219E-05	495.240234245865	4.1219	0.18624	4.1219	4.0598	4.246	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	489.136132171443	0	9.91298627194703						205	22	2	NaN	NaN	NaN	0.070585	1	17989	20.183	19.822	1	67498			11921	418	10039	10300	11921	11921		
LHPEMSNLDLTK	12	Unmodified	_LHPEMSNLDLTK_			0	0	0	P17480	P17480	P17480	UBTF	Nucleolar transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.358302	1396.70205	1.6804	0.0011752	0.093196	6.5177E-05	1.7736	0.0012404	699.358883457381	8.0414	0.14202	8.0414	7.997	8.139	0	480	43	1.00353128488872	0.0282184646673942	1.00353128488872	405.917076393348	0	11.4140504143504						264	17	2	NaN	NaN	NaN	0.070182	1	15345	26.579	19.888	1	66950			11922	737	10040	10301	11922	11922		
LHPFHVIR	8	Unmodified	_LHPFHVIR_			0	0	0	P27635;Q96L21	P27635	P27635	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	340.203016	1017.58722	-1.0822	-0.00036817	-0.28454	-9.6803E-05	-1.3667	-0.00046497	340.203008731246	4.9465	0.21278	4.9465	4.8933	5.1061	0	864	52	0.743159753061487	0.0349062201709243	0.743159753061487	452.536574121681	0	21.255646886976						395	25	3	NaN	NaN	NaN	0.019331	1	4690	56.89	41.392	1	146990			11923	864	10041	10302	11923	11923		
LHPFHVIR	8	Unmodified	_LHPFHVIR_			0	0	0	P27635;Q96L21	P27635	P27635	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.800886	1017.58722	1.4477	0.00073805	0.61816	0.00031514	2.0659	0.0010532	509.801225539622	4.9376	0.24826	4.9376	4.8933	5.1415	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	367.154051727987	0	10.7134828406882						389	29	3	NaN	NaN	NaN	0.0020082	1	4692	96.666	62.853	1	154460			11924	864	10041	10302	11924	11924		
LHPVILASIVDSYER	15	Unmodified	_LHPVILASIVDSYER_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.317433	1710.93047	-1.0985	-0.00062761	-0.47219	-0.00026977	-1.5707	-0.00089738	571.317254569016	14.808	0.1951	14.808	14.737	14.932	0	702	49	0.853568545818287	0.0326000897704161	0.853568545818287	516.952299863955	0	19.7438055387009						669	23	5	NaN	NaN	NaN	0.00015985	1	24795	106	100.39	1	261940			11925	72	10042	10303	11925	11925		
LHPVILASIVDSYER	15	Unmodified	_LHPVILASIVDSYER_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.317433	1710.93047	-0.036865	-2.1062E-05	0.90901	0.00051933	0.87214	0.00049827	571.317666770947	14.79	0.1419	14.79	14.746	14.888	0	579	49	0.936845902828289	0.032415189981154	0.936845902828289	567.388103836823	0	19.6318232522477						419	17	4	NaN	NaN	NaN	2.1568E-06	1	24797	163.43	154.27	1	157550			11926	72	10042	10303	11926	11926		
LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK	31	Unmodified	_LHQLAMQQSHFPMTHGNTGFSGIESSSPEVK_			0	0	0	Q15366	Q15366	Q15366	PCBP2	Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	846.404037	3381.58704	1.7874	0.0015129	-0.85506	-0.00072373	0.93233	0.00078912	846.906021819879	10.019	0.097515	10.019	9.9928	10.09	0	393	28	1.0618830335572	0.0180717032280036	1.0618830335572	854.075746022264	0	14.5351257422823						253	12	5	NaN	NaN	NaN	0.013993	1	38600	33.691	30.923	1	51582			11927	1834	10043	10304	11927	11927		
LHQLSGSDQLESTAHSR	17	Unmodified	_LHQLSGSDQLESTAHSR_			0	0	0	O60271	O60271	O60271	SPAG9	C-Jun-amino-terminal kinase-interacting protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.641527	1864.90275	1.9524	0.0012157	0.12655	7.8797E-05	2.079	0.0012945	622.976060204568	4.2992	0.053195	4.2992	4.2726	4.3258	0	603	22	0.920633820089869	0.0141944207177085	0.920633820089869	557.199800827291	0	8.5909600800826						76	7	3	NaN	NaN	NaN	0.00040041	1	28804	69.201	63.173	1	17417			11928	252	10044	10305	11928	11928		
LHSFLGDDVFLR	12	Unmodified	_LHSFLGDDVFLR_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.874976	1417.7354	1.4193	0.0010075	1.2163	0.00086342	2.6356	0.001871	709.875556342539	14.072	0.12415	14.072	14.028	14.152	0	441	55	1.02971785871157	0.0362108052293146	1.02971785871157	416.448662928226	0	14.6447313637652						448	15	4	NaN	NaN	NaN	3.2216E-05	1	16027	111.61	85.75	1	108990			11929	545	10045	10306	11929	11929		
LHSLLGDYYQAIK	13	Unmodified	_LHSLLGDYYQAIK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.608436	1519.80348	-1.0326	-0.00052416	0.41373	0.00021001	-0.61888	-0.00031415	507.608581002404	12.263	0.11529	12.263	12.21	12.325	0	720	25	0.841341816837976	0.0163091029338942	0.841341816837976	510.061307422544	0	9.88735160771512						161	14	2	NaN	NaN	NaN	0.021836	1	19141	47.561	44.89	1	58181			11930	3329	10046	10307	11930	11930		
LHTDDELNWLDHGR	14	Unmodified	_LHTDDELNWLDHGR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.272775	1719.7965	0.41517	0.00023842	5.2047	0.0029889	5.6198	0.0032273	574.610081914521	9.6381	0.2128	9.6381	9.5228	9.7356	0	663	52	0.880024865079826	0.0345679267286869	0.880024865079826	532.953134552003	0	20.93473222867						883	25	5	NaN	NaN	NaN	5.1721E-08	1	25047	134.2	120.4	1	248690			11931	3406	10047	10308	11931	11931		
LHTNFHIPK	9	Unmodified	_LHTNFHIPK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	369.541697	1105.60326	-1.1005	-0.00040667	0.6107	0.00022568	-0.48977	-0.00018099	369.541888212143	5.2835	0.088714	5.2835	5.2391	5.3278	0	870	34	0.739054571787983	0.0225863731448769	0.739054571787983	449.559278410034	0	13.7390579809897						160	11	3	NaN	NaN	NaN	0.067234	1	6874	16.457	13.859	1	33867			11932	3238	10048	10309	11932	11932		
LHVAILER	8	Unmodified	_LHVAILER_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.792727	949.5709	0.67814	0.00032266	-0.073106	-3.4784E-05	0.60504	0.00028787	475.792724772333	7.6511	0.14193	7.6511	7.6068	7.7487	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	346.020087677209	0	9.93391132788463						263	17	3	NaN	NaN	NaN	0.0066182	1	3246	65.313	40.493	1	109080			11933	1816	10049	10310	11933	11933		
LHVDPENFR	9	Unmodified	_LHVDPENFR_			0	0	0	CON__Q3SX09;P68871;P02042	CON__Q3SX09	CON__Q3SX09	HBB;HBD	Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.78563	1125.55671	1.2526	0.0007062	1.4032	0.0007911	2.6558	0.0014973	563.786332398097	6.6136	0.36354	6.6136	6.4895	6.853	0	627	46	0.90440375274676	0.0304503749625084	0.90440375274676	366.68370227456	0	12.345875603667						893	42	5	NaN	NaN	NaN	4.4443E-05	1	7406	130	108.07	1	782750		+	11934	40	10050	10311	11934	11934		
LHVHGSIGK	9	Unmodified	_LHVHGSIGK_			0	0	0		REV__P16260	REV__P16260			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.274701	946.534849	0.65022	0.00030838	0.25076	0.00011893	0.90098	0.00042731	474.274763215564	5.5937	0.12415	5.5937	5.5583	5.6825	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	346.863727618416	0	7.44922154165471						150	15	2	NaN	NaN	NaN	0.021074	1	3185	38.322	9.2205	1	67941	+		11935	3488	10051	10312	11935	11935		
LHVTALDYLAPYAK	14	Unmodified	_LHVTALDYLAPYAK_			0	0	0	Q9Y221	Q9Y221	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.932491	1573.85043	2.3514	0.0018528	0.63478	0.00050016	2.9862	0.0023529	788.434585972115	13.948	0.14188	13.948	13.895	14.036	0	339	58	1.09798411722691	0.0380620944866981	1.09798411722691	443.631774213384	0	15.3786873985552						403	17	2	NaN	NaN	NaN	6.8267E-08	1	20795	96.946	81.066	1	184460			11936	3323	10052	10313	11936	11936		
LHYAFQTEGK	10	Unmodified	_LHYAFQTEGK_			0	0	0	P51812;Q15349;Q9UK32;Q15418	P51812;Q15418	Q15418	RPS6KA3;RPS6KA2;RPS6KA6;RPS6KA1	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.301113	1192.58767	1.865	0.001114	-0.92064	-0.0005499	0.94436	0.00056407	597.300915908077	5.044	0.19504	5.044	4.9376	5.1327	0	600	34	0.922661313351899	0.022302429094845	0.922661313351899	373.831592858742	0	9.03620046976573						248	23	3	NaN	NaN	NaN	2.0169E-05	1	9228	108.3	67.801	1	58227			11937	1845;1200	10053	10314	11937	11937		
LHYCVSCAIHSK	12	Unmodified	_LHYCVSCAIHSK_			0	0	0	P62854;Q5JNZ5	P62854	P62854	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.235839	1473.68569	0.13187	6.4909E-05	0.96036	0.00047272	1.0922	0.00053763	492.236661407375	4.5386	0.12414	4.5386	4.5031	4.6273	0	765	31	0.810730346695089	0.0204289410933094	0.810730346695089	491.641794391887	0	12.3884856383921						285	15	4	NaN	NaN	NaN	3.0423E-05	1	17692	90.142	86.406	1	89710			11938	1405	10054	10315	11938	11938		
LHYCVSCAIHSK	12	Unmodified	_LHYCVSCAIHSK_			0	0	0	P62854;Q5JNZ5	P62854	P62854	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.850121	1473.68569	2.5635	0.0018914	-0.96123	-0.00070925	1.6022	0.0011822	737.849128661304	4.5386	0.053212	4.5386	4.512	4.5652	0	402	31	1.05585747106793	0.0200949105761223	1.05585747106793	426.863647367734	0	8.12400068863099						127	7	3	NaN	NaN	NaN	0.00036967	1	17693	63.397	57.901	1	26885			11939	1405	10054	10315	11939	11939		
LHYGDLTDSTCLVK	14	Unmodified	_LHYGDLTDSTCLVK_			0	0	0	O60547	O60547	O60547	GMDS	GDP-mannose 4,6 dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.398155	1620.78176	2.1733	0.0017634	1.1324	0.00091882	3.3057	0.0026822	811.397990979578	9.647	0.044331	9.647	9.6292	9.6736	0	246	22	1.1599488233373	0.0139631798244857	1.1599488233373	468.549738951255	0	5.64028699375626						85	6	3	NaN	NaN	NaN	0.0092264	1	22216	39.293	32.153	1	13721			11940	265	10055	10316	11940	11940		
LHYNEGLNIK	10	Unmodified	_LHYNEGLNIK_			0	0	0	P41236;Q6NXS1	P41236	P41236	PPP1R2;PPP1R2P3	Protein phosphatase inhibitor 2;Protein phosphatase inhibitor 2-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.822212	1199.62987	1.82	0.0010935	-0.022628	-1.3595E-05	1.7973	0.0010799	600.822322495537	6.0461	0.20396	6.0461	6.0106	6.2146	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.933705071366	0	9.83451058095721						485	24	4	NaN	NaN	NaN	2.1609E-05	1	9454	120.33	92.236	1	217330			11941	1033	10056	10317	11941	11941		
LIADLGSTSITNLGFR	16	Unmodified	_LIADLGSTSITNLGFR_			0	0	0	Q92520	Q92520	Q92520	FAM3C	Protein FAM3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.462144	1676.90974	1.6321	0.0013701	-0.18862	-0.00015834	1.4435	0.0012118	839.462219000568	16.262	0.10639	16.262	16.218	16.324	0	339	52	1.09798411722691	0.0340414857493967	1.09798411722691	443.393896447877	0	13.7468172539882						334	13	3	NaN	NaN	NaN	2.4825E-17	1	23827	160.62	139.47	1	88643			11942	2405	10057	10318	11942	11942		
LIAEEGVDSLNVK	13	Unmodified	_LIAEEGVDSLNVK_			0	0	0	O95202	O95202	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.877382	1385.74021	1.665	0.0011553	-0.10685	-7.4138E-05	1.5581	0.0010812	693.877504924743	9.8952	0.23052	9.8952	9.842	10.073	0	477	37	1.0055473068722	0.0241839121258494	1.0055473068722	406.764074978823	0	9.78287801877684						323	27	4	NaN	NaN	NaN	0.00050982	1	15018	79.311	64.855	1	108270			11943	411	10058	10319	11943	11943		
LIAEGPGETVLVAEEEAAR	19	Unmodified	_LIAEGPGETVLVAEEEAAR_			0	0	0	Q9H9J2	Q9H9J2	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.510019	1953.00549	2.1639	0.0021153	-1.2603	-0.001232	0.90362	0.0008833	978.010130855056	13.815	0.15072	13.815	13.753	13.903	0	228	40	1.17191150690002	0.02591024903842	1.17191150690002	472.698918569996	0	10.4510849396288						423	18	4	NaN	NaN	NaN	1.9267E-10	1	30772	124.62	113.42	1	110910			11944	2937	10059	10320	11944	11944		
LIAEQPPHLTPGIR	14	Unmodified	_LIAEQPPHLTPGIR_			0	0	0	P78330	P78330	P78330	PSPH	Phosphoserine phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.631464	1540.87256	1.1853	0.00060999	0.69098	0.0003556	1.8763	0.00096559	514.631800598025	8.6891	0.15085	8.6891	8.6091	8.7599	0	591	115	0.928742107665821	0.0771464118421716	0.928742107665821	562.978105521506	0	46.7640483059859						780	18	4	NaN	NaN	NaN	8.8507E-05	1	19753	113.46	102.67	1	192630			11945	1456	10060	10321	11945	11945		
LIAEQTLQENLIEK	14	Unmodified	_LIAEQTLQENLIEK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.456527	1640.8985	1.7972	0.0014763	1.1638	0.00095602	2.961	0.0024324	821.456876101176	12.219	0.079817	12.219	12.183	12.263	0	330	34	1.10399226369747	0.0220268393331327	1.10399226369747	445.90031296494	0	8.89659726362339						219	10	3	NaN	NaN	NaN	3.7845E-05	1	22786	99.589	81.858	1	56318			11946	2005	10061	10322	11946	11946		
LIAHAGSLLNLAK	13	Unmodified	_LIAHAGSLLNLAK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.903537	1319.79252	1.6028	0.0010593	1.2396	0.00081925	2.8424	0.0018786	660.904445596384	10.454	0.1153	10.454	10.41	10.525	0	444	25	1.02770517576159	0.01610257649452	1.02770517576159	415.932524477065	0	6.5170298349305						192	14	3	NaN	NaN	NaN	2.8726E-05	1	12989	79.311	53.454	1	56466			11947	3357	10062	10323	11947	11947		
LIAHAGSLTNLAK	13	Unmodified	_LIAHAGSLTNLAK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.925988	1307.75613	-2.5121	-0.0010976	2.419	0.0010569	-0.093002	-4.0635E-05	436.926683464371	7.1191	0.17743	7.1191	7.0303	7.2077	0	777	40	0.802556497112065	0.0265705609050354	0.802556497112065	487.258161725292	0	16.1318520368163						346	21	3	NaN	NaN	NaN	0.044009	1	12603	36.514	30.251	1	106890			11948	92	10063	10324	11948	11948		
LIAHAGSLTNLAK	13	Unmodified	_LIAHAGSLTNLAK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.885344	1307.75613	1.5714	0.0010291	-0.24015	-0.00015727	1.3312	0.00087179	654.885250264402	7.1102	0.11528	7.1102	7.0747	7.19	-8.8818E-16	477	34	1.0055473068722	0.0221731807232346	1.0055473068722	407.003610626538	0	8.97477876153096						270	14	4	NaN	NaN	NaN	3.4923E-05	1	12604	120.65	108.59	1	101190			11949	92	10063	10324	11949	11949		
LIALLEVLSQK	11	Unmodified	_LIALLEVLSQK_			0	0	0	O75369;P21333	O75369;P21333	O75369	FLNB;FLNA	Filamin-B;Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.889564	1225.76457	0.5585	0.00034285	-0.77138	-0.00047354	-0.21288	-0.00013069	613.889285799622	18.683	0.16847	18.683	18.63	18.798	0	537	55	0.965173861991602	0.0363964682875382	0.965173861991602	390.935180233859	0	14.7420692273041						716	20	5	NaN	NaN	NaN	8.2606E-08	1	10183	142.56	104.84	1	509670			11950	326;792	10064	10325	11950	11950		
LIALSIDSVEDHLAWSK	17	Unmodified	_LIALSIDSVEDHLAWSK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.007036	1895.99928	0.11225	7.1056E-05	-0.11568	-7.3227E-05	-0.0034294	-2.1708E-06	633.341461826126	16.431	0.41676	16.431	16.377	16.794	0	645	97	0.892219381832517	0.0650465251153639	0.892219381832517	539.937059070622	0	39.3636701787608						2065	48	6	NaN	NaN	NaN	4.0253E-12	1	29520	154.09	139.11	1	2919400			11951	893	10065	10326	11951	11951		
LIALSIDSVEDHLAWSK	17	Unmodified	_LIALSIDSVEDHLAWSK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.006916	1895.99928	1.4033	0.0013317	0.96424	0.00091507	2.3675	0.0022468	949.509225075628	16.431	0.27487	16.431	16.386	16.661	0	147	76	1.22562176648663	0.0496703314801898	1.22562176648663	494.468194016095	0	20.0391342376328						1316	32	6	NaN	NaN	NaN	1.5415E-44	1	29521	265.34	250.37	1	1430500			11952	893	10065	10326	11952	11952		
LIANMPESGPSYEFHLTR	18	Unmodified	_LIANMPESGPSYEFHLTR_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.00693	2060.99896	0.64638	0.00044471	0.3042	0.00020929	0.95058	0.000654	688.341454849844	12.254	0.097561	12.254	12.219	12.316	0	555	43	0.953040030838688	0.0283240376798207	0.953040030838688	576.408173323004	0	17.1306621882295						418	12	4	NaN	NaN	NaN	1.2976E-05	1	32725	79.235	72.029	1	98854			11953	2549	10066	10327	11953	11953		
LIANNTTVER	10	Unmodified	_LIANNTTVER_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.811845	1129.60914	1.901	0.0010756	0.050528	2.8589E-05	1.9515	0.0011042	565.81195663932	4.1041	0.15961	4.1041	4.0686	4.2283	0	648	43	0.890187667287968	0.028445983405885	0.890187667287968	360.904236872114	0	11.5327096863235						400	19	3	NaN	NaN	NaN	0.0031188	1	7524	74.269	21.678	1	149350			11954	470	10067	10328	11954	11954		
LIAPVAEEEATVPNNK	16	Unmodified	_LIAPVAEEEATVPNNK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.951609	1693.88867	2.9968	0.0025411	0.66678	0.0005654	3.6636	0.0031065	847.952460858242	8.9996	0.33699	8.9996	8.9375	9.2745	0	324	241	1.1079963157843	0.160472536534979	1.1079963157843	447.400313465448	0	64.7975648705334						3100	39	6	NaN	NaN	NaN	3.6541E-12	1	24318	171.09	159.74	1	4842700			11955	553	10068	10329	11955	11955		
LIAQACVSIFPDSGHFNVDNIR	22	Unmodified	_LIAQACVSIFPDSGHFNVDNIR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.081269	2472.22198	1.3558	0.0011186	0.27978	0.00023084	1.6356	0.0013495	825.415597608157	15.109	0.19508	15.109	15.03	15.225	-1.7764E-15	501	100	0.98941132619024	0.0666116331887895	0.98941132619024	597.739913535894	0	40.2425470669173						1352	23	5	NaN	NaN	NaN	2.6456E-06	1	36689	99.909	96.468	1	298940			11956	1174	10069	10330	11956	11956		
LIASVAGSVER	11	Unmodified	_LIASVAGSVER_			0	0	0	Q13868	Q13868	Q13868	EXOSC2	Exosome complex component RRP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.316763	1100.61897	0.29693	0.0001637	-8.4208	-0.0046425	-8.1238	-0.0044788	551.312559079753	7.1191	0.15082	7.1191	7.0392	7.19	0	651	40	0.888155670855968	0.0264159589549013	0.888155670855968	360.194783674221	0	10.7130888576523						253	18	3	NaN	NaN	NaN	0.061143	1	6744	28.647	9.3906	1	97206			11957	1707	10070	10331	11957	11957		
LIASYCNVGDIEGASK	16	Unmodified	_LIASYCNVGDIEGASK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.914169	1695.81379	2.2521	0.0019118	-0.63613	-0.00054002	1.6159	0.0013718	848.91354759047	10.002	0.22165	10.002	9.9307	10.152	0	372	64	1.07593298845566	0.0421208396190846	1.07593298845566	434.449392843706	0	17.0079116403377						1061	26	5	NaN	NaN	NaN	0.0040457	1	24363	23.432	20.144	1	418080			11958	1055	10071	10332	11958	11958		
LICCDILDVLDK	12	Unmodified	_LICCDILDVLDK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.87547	1475.73639	1.2096	0.00089378	1.0916	0.00080653	2.3012	0.0017003	738.87645837065	17.548	0.399	17.548	17.433	17.832	0	453	88	1.02166545906632	0.0583920494477788	1.02166545906632	413.035102326173	0	23.60652002539						2815	46	7	NaN	NaN	NaN	1.8889E-07	1	17767	159.93	129.02	1	3560600			11959	1375	10072	10333	11959	11959		
LIDECVSQIVLHR	13	Unmodified	_LIDECVSQIVLHR_			0	0	0	Q9NSV4	Q9NSV4	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.952097	1580.83446	-1.9396	-0.001024	-0.10821	-5.7127E-05	-2.0478	-0.0010811	527.952210628314	11.988	0.097522	11.988	11.961	12.059	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	501.231138452057	0	11.1309971989044						199	12	4	NaN	NaN	NaN	1.8421E-05	1	21003	92.428	82.685	1	50726			11960	3039	10073	10334	11960	11960		
LIDFLECGK	9	Unmodified	_LIDFLECGK_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.781167	1093.54778	1.0274	0.00056278	-1.0929	-0.00059866	-0.065509	-3.5884E-05	547.780966252406	12.822	0.32813	12.822	12.697	13.026	0	654	46	0.886123392477847	0.0304841838877806	0.886123392477847	359.399286704614	0	12.363959735229						946	34	5	NaN	NaN	NaN	7.3668E-06	1	6544	113.7	68.931	1	744380			11961	743	10074	10335	11961	11961		
LIDFLESGK	9	Unmodified	_LIDFLESGK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.281857	1020.54916	-0.25015	-0.0001279	-0.57286	-0.00029289	-0.82302	-0.00042079	511.281640958272	12.493	0.24827	12.493	12.431	12.68	0	696	49	0.857641857947968	0.0325774564338044	0.857641857947968	348.156995250869	0	13.2247152349198						580	29	3	NaN	NaN	NaN	0.011621	1	4753	42.075	12.973	1	261700			11962	2435	10075	10336	11962	11962		
LIDHLENTK	9	Unmodified	_LIDHLENTK_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	361.532868	1081.57677	-0.030272	-1.0944E-05	-0.041361	-1.4953E-05	-0.071633	-2.5898E-05	361.532763694986	3.9002	0.11526	3.9002	3.8736	3.9888	0	843	22	0.757518876820989	0.0143531208129216	0.757518876820989	460.916699231768	0	8.73323856499746						145	14	3	NaN	NaN	NaN	0.047398	1	6248	13.995	0.34697	1	31591			11963	2849	10076	10337	11963	11963		
LIDHLENTK	9	Unmodified	_LIDHLENTK_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.795663	1081.57677	2.2541	0.0012213	-0.30256	-0.00016392	1.9515	0.0010573	541.795498216897	3.909	0.11526	3.909	3.8736	3.9888	4.4409E-16	627	34	0.90440375274676	0.0223271759310266	0.90440375274676	366.864056498885	0	9.05683806302636						149	14	2	NaN	NaN	NaN	0.011701	1	6249	58.426	49.663	1	34987			11964	2849	10076	10337	11964	11964		
LIDIFYPGDQQSVTFGTK	18	Unmodified	_LIDIFYPGDQQSVTFGTK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.01748	2028.02041	0.9009	0.00091443	0.27511	0.00027925	1.176	0.0011937	1015.51936695531	16.927	0.30149	16.927	16.777	17.078	0	195	67	1.19381749893585	0.0437669065341655	1.19381749893585	481.409152785409	0	17.6490874136391						1628	35	5	NaN	NaN	NaN	0.00013577	1	32116	65.212	59.514	1	471190			11965	1259	10077	10338	11965	11965		
LIDLHSPSEIVK	12	Unmodified	_LIDLHSPSEIVK_			0	0	0	P60866	P60866	P60866	RPS20	40S ribosomal protein S20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.925765	1349.75547	-0.51401	-0.00023178	0.063951	2.8837E-05	-0.45006	-0.00020294	450.925874726368	9.7889	0.399	9.7889	9.5849	9.9839	0	789	52	0.794378096728713	0.034770309390331	0.794378096728713	482.136118210543	0	21.1033285880727						1291	46	5	NaN	NaN	NaN	0.0021316	1	13886	81.099	48.959	1	985490			11966	1312	10078	10339	11966	11966		
LIDLHSPSEIVK	12	Unmodified	_LIDLHSPSEIVK_			0	0	0	P60866	P60866	P60866	RPS20	40S ribosomal protein S20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.88501	1349.75547	2.6532	0.0017932	0.39114	0.00026436	3.0443	0.0020576	675.885404652287	9.7622	0.25716	9.7622	9.6647	9.9218	0	432	64	1.035754240522	0.0422546944183948	1.035754240522	419.093715372722	0	17.0973732792243						1304	30	5	NaN	NaN	NaN	6.91E-08	1	13887	148.9	101.34	1	648880			11967	1312	10078	10339	11967	11967		
LIDNISSR	8	Unmodified	_LIDNISSR_			0	0	0	Q92552	Q92552	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.256174	916.497795	-0.057949	-2.6613E-05	-2.4657	-0.0011324	-2.5237	-0.001159	459.25557528412	5.0706	0.14185	5.0706	5.0174	5.1593	0	759	28	0.814815566123307	0.0183770979161022	0.814815566123307	331.271003850071	0	7.47138362056882						133	17	3	NaN	NaN	NaN	0.0076684	1	2641	56.014	17.692	1	45543			11968	2412	10079	10340	11968	11968		
LIDSWMGK	8	Unmodified	_LIDSWMGK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.244221	948.473888	-0.98612	-0.00046865	-0.033232	-1.5793E-05	-1.0194	-0.00048444	475.243997149727	9.6292	0.13301	9.6292	9.5672	9.7002	0	759	52	0.814815566123307	0.034741288932732	0.814815566123307	331.10603387178	0	14.1173670071611						288	16	2	NaN	NaN	NaN	0.062251	1	3217	38.322	10.617	1	104720			11969	1076	10080	10341	11969	11969		
LIDVLENR	8	Unmodified	_LIDVLENR_			0	0	0	Q9BUQ8	Q9BUQ8	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.279649	970.544745	0.14608	7.1035E-05	-1.3684	-0.00066545	-1.2224	-0.00059441	486.279192108008	9.6292	0.14189	9.6292	9.5672	9.709	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	350.049796840419	0	7.44244789539613						232	17	3	NaN	NaN	NaN	0.017267	1	3647	65.313	43.385	1	65719			11970	2749	10081	10342	11970	11970		
LIDWGLAEFYHPAQEYNVR	19	Unmodified	_LIDWGLAEFYHPAQEYNVR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.383165	2320.12767	0.0041224	3.1924E-06	-0.2274	-0.0001761	-0.22328	-0.0001729	774.71712442323	16.351	0.097522	16.351	16.298	16.395	0	564	37	0.946969335010767	0.0242911943445451	0.946969335010767	572.308676932876	0	14.6805823403859						329	12	4	NaN	NaN	NaN	0.00072441	1	35818	37.886	34.981	1	74461			11971	772	10082	10343	11971	11971		
LIDWGLAEFYHPGQEYNVR	19	Unmodified	_LIDWGLAEFYHPGQEYNVR_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.711282	2306.11202	0.39184	0.00030161	-1.6079	-0.0012377	-1.2161	-0.00093604	770.044010349388	16.236	0.12414	16.236	16.191	16.315	0	579	43	0.936845902828289	0.0283515051757137	0.936845902828289	566.210974984265	0	17.1350841577566						398	15	4	NaN	NaN	NaN	3.9929E-05	1	35680	53.363	50.974	1	88020			11972	1450	10083	10344	11972	11972		
LIDWSALMDK	10	Unmodified	_LIDWSALMDK_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.307549	1190.60055	-0.079307	-4.7291E-05	-1.7683	-0.0010545	-1.8476	-0.0011018	596.30645802115	15.987	0.13298	15.987	15.934	16.067	0	597	34	0.924688525662974	0.0222962488144068	0.924688525662974	374.660106814484	0	9.03386895211963						347	16	4	NaN	NaN	NaN	3.6856E-07	1	9181	85.716	56.614	1	97279			11973	1883	10084	10345	11973	11973		
LIEAEDNMNCQMSNITVTYR	20	Unmodified	_LIEAEDNMNCQMSNITVTYR_			0	0	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1201.54288	2401.07122	0.75528	0.0009075	0.099352	0.00011938	0.85463	0.0010269	1202.04431651763	12.387	0.053193	12.387	12.361	12.414	0	72	52	1.27517645957152	0.0336556593448276	1.27517645957152	513.673737696645	0	13.5573615718342						226	7	3	NaN	NaN	NaN	9.7238E-11	1	36353	84.266	82.418	1	42724			11974	1387	10085	10346	11974	11974		
LIEDTEDWRPR	11	Unmodified	_LIEDTEDWRPR_			0	0	1	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.240524	1428.69974	-0.057312	-2.7352E-05	-1.3086	-0.00062451	-1.3659	-0.00065186	477.239884760875	7.6688	0.13305	7.6688	7.6068	7.7398	0	762	31	0.812773098473386	0.0204317832671826	0.812773098473386	493.024704531494	0	12.3938328264983						344	16	4	NaN	NaN	NaN	0.0054581	1	16348	33.426	24.952	1	86505			11975	2548	10086	10347	11975	11975		
LIEDTEDWRPR	11	Unmodified	_LIEDTEDWRPR_			0	0	1	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.357148	1428.69974	3.0574	0.0021871	-3.3212	-0.0023759	-0.26386	-0.00018875	715.353738708038	7.6777	0.097581	7.6777	7.6245	7.7221	0	414	40	1.04781950764076	0.0261396123563653	1.04781950764076	423.738108459943	0	10.5708567315201						272	12	3	NaN	NaN	NaN	0.014603	1	16349	76.572	71.076	1	66239			11976	2548	10086	10347	11976	11976		
LIEECISQIVLHK	13	Unmodified	_LIEECISQIVLHK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.960481	1580.85961	-0.92105	-0.00048628	-1.0162	-0.00053652	-1.9373	-0.0010228	527.960057465755	13.469	0.14186	13.469	13.425	13.567	0	753	34	0.81889964927511	0.0224608985391257	0.81889964927511	496.28293249212	0	13.6121203657524						433	17	5	NaN	NaN	NaN	1.997E-05	1	21009	99.34	94.19	1	261040			11977	270	10087	10348	11977	11977		
LIEESSVDEVVVTNTVPHEVQK	22	Unmodified	_LIEESSVDEVVVTNTVPHEVQK_			0	0	0	Q14558	Q14558	Q14558	PRPSAP1	Phosphoribosyl pyrophosphate synthase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.758626	2450.25405	2.4265	0.0019843	-0.93297	-0.00076294	1.4935	0.0012213	818.092424298612	11.367	0.13304	11.367	11.305	11.438	0	339	31	1.09798411722691	0.0200340549752125	1.09798411722691	663.365984738155	0	12.1039188075829						303	16	4	NaN	NaN	NaN	4.7679E-07	1	36582	70.831	63.183	1	57173			11978	1755	10088	10349	11978	11978		
LIEEVMIGEDK	11	Unmodified	_LIEEVMIGEDK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.328679	1274.6428	1.72	0.0010979	-0.42184	-0.00026927	1.2981	0.00082864	638.328841910564	10.746	0.28375	10.746	10.631	10.915	1.7764E-15	540	52	0.963152256458504	0.0343768196324545	0.963152256458504	389.949717888717	0	13.9180809967448						926	33	5	NaN	NaN	NaN	1.782E-08	1	11623	151.22	81.317	1	398710			11979	1461	10089	10350	11979	11979		
LIEGGAHIYVCGDAR	15	Unmodified	_LIEGGAHIYVCGDAR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.271718	1629.79333	-0.41661	-0.00022675	0.58743	0.00031972	0.17081	9.2969E-05	544.272170134092	7.1723	0.25713	7.1723	7.1368	7.394	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	502.336803115184	0	12.3619736576952						268	30	3	NaN	NaN	NaN	0.0055552	1	22468	27.357	25.056	1	56744			11980	728	10090	10351	11980	11980		
LIEGGAHIYVCGDAR	15	Unmodified	_LIEGGAHIYVCGDAR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.903939	1629.79333	2.1886	0.0017857	-1.6942	-0.0013823	0.49445	0.00040342	815.90261760423	7.1723	0.11525	7.1723	7.1457	7.261	0	306	28	1.12000185836644	0.0180021182425405	1.12000185836644	452.39237332076	0	7.27143525317194						118	14	2	NaN	NaN	NaN	0.00022181	1	22469	33.526	31.225	1	24713			11981	728	10090	10351	11981	11981		
LIEGLSHEVIVSAACGR	17	Unmodified	_LIEGLSHEVIVSAACGR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.320849	1809.94072	0.75028	0.00045341	-0.51131	-0.000309	0.23897	0.00014442	604.32028921337	11.163	0.24829	11.163	11.092	11.341	0	597	46	0.924688525662974	0.0303913445314729	0.924688525662974	559.779183647686	0	18.3980243721377						463	29	5	NaN	NaN	NaN	3.3174E-10	1	27480	94.507	81.925	1	182680			11982	3151	10091	10352	11982	11982		
LIEGLSHEVIVSAACGR	17	Unmodified	_LIEGLSHEVIVSAACGR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.977635	1809.94072	1.6584	0.0015025	-0.30552	-0.00027679	1.3529	0.0012257	905.97741085162	11.163	0.070928	11.163	11.137	11.208	0	228	43	1.17191150690002	0.0279014290845747	1.17191150690002	472.962460332604	0	11.2605162326151						239	9	4	NaN	NaN	NaN	0.04006	1	27481	24.922	23.447	1	51237			11983	3151	10091	10352	11983	11983		
LIEIENFK	8	Unmodified	_LIEIENFK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.2844	1004.55425	-0.07272	-3.6599E-05	-4.9069	-0.0024696	-4.9796	-0.0025062	503.281813886781	10.746	0.1862	10.746	10.676	10.862	0	705	40	0.851531465363931	0.0264820512722772	0.851531465363931	345.749747893588	0	10.7525827565065						308	22	3	NaN	NaN	NaN	0.002729	1	4387	58.286	0	1	92786			11984	1764	10092	10353	11984	11984		
LIEILSEK	8	Unmodified	_LIEILSEK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.786776	943.558998	-0.79089	-0.00037392	-1.7713	-0.00083745	-2.5622	-0.0012114	472.785987622307	10.339	0.079797	10.339	10.303	10.383	0	729	22	0.835224628594324	0.014277408192748	0.835224628594324	339.424659905423	0	5.80215699375429						98	10	2	NaN	NaN	NaN	0.053351	1	3135	47.349	16.788	1	22902			11985	3158	10093	10354	11985	11985		
LIEQAPIQMGEEAVR	15	Unmodified	_LIEQAPIQMGEEAVR_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.440354	1682.86616	1.8906	0.0015927	-3.7274	-0.0031401	-1.8368	-0.0015474	842.936799196061	11.518	0.13313	11.518	11.447	11.58	0	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	437.716077801307	0	8.0967171950744						172	16	2	NaN	NaN	NaN	0.0013035	1	23987	58.313	49.507	1	62688			11986	2005	10094	10355	11986	11986		
LIEQYALR	8	Unmodified	_LIEQYALR_			0	0	0	Q9NUQ3	Q9NUQ3	Q9NUQ3	TXLNG	Gamma-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.290017	1004.56548	0.66226	0.00033331	-0.55598	-0.00027982	0.10628	5.3491E-05	503.289595303756	7.9704	0.23962	7.9704	7.8374	8.077	0	660	85	0.882057989648486	0.056939393815902	0.882057989648486	358.14444434624	0	23.1192595032609						710	28	3	NaN	NaN	NaN	0.0194	1	4390	66.087	25.884	1	190010			11987	3054	10095	10356	11987	11987		
LIEQYELR	8	Unmodified	_LIEQYELR_			0	0	0	P40222	P40222	P40222	TXLNA	Alpha-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.292756	1062.57096	0.87792	0.00046731	-2.638	-0.0014042	-1.7601	-0.00093688	532.292272845011	8.0414	0.12431	8.0414	7.9881	8.1124	0	636	25	0.898312834727904	0.0162480818907916	0.898312834727904	364.475297950635	0	6.59238548012769						167	15	3	NaN	NaN	NaN	0.019299	1	5797	62.88	39.305	1	65671			11988	1015	10096	10357	11988	11988		
LIEQYELREEHIDK	14	Unmodified	_LIEQYELREEHIDK_			0	0	1	P40222	P40222	P40222	TXLNA	Alpha-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.647619	1813.92103	0.25566	0.00015484	0.96476	0.0005843	1.2204	0.00073914	605.648163534002	6.9683	0.12416	6.9683	6.8885	7.0126	0	669	34	0.875957769340875	0.0223705821148275	0.875957769340875	530.270175522525	0	13.5422653006397						239	15	4	NaN	NaN	NaN	0.0047845	1	27577	34.779	28.032	1	61582			11989	1015	10097	10358	11989	11989		
LIEVANLACSISNNEEGVK	19	Unmodified	_LIEVANLACSISNNEEGVK_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.52006	2059.02557	1.8818	0.0019392	-3.2734	-0.0033733	-1.3916	-0.0014341	1030.51506485089	14.32	0.079797	14.32	14.294	14.373	0	198	28	1.1918274123006	0.0179132408204183	1.1918274123006	480.557449587432	0	7.22280863291184						146	10	3	NaN	NaN	NaN	0.038555	1	32686	17.807	14.519	1	25550			11990	959	10098	10359	11990	11990		
LIEVANLACSISNNEEGVK	19	Unmodified	_LIEVANLACSISNNEEGVK_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.52006	2059.02557	0.69411	0.00071529	1.1081	0.0011419	1.8022	0.0018572	1030.52175032519	14.32	0.079797	14.32	14.294	14.373	0	66	34	1.27913350869533	0.0217622834966473	1.27913350869533	515.760178208962	0	8.77478319359562						186	10	4	NaN	NaN	NaN	5.9793E-09	1	32688	81.578	80.103	1	28715			11991	959	10098	10359	11991	11991		
LIEVDDER	8	Unmodified	_LIEVDDER_			0	0	0	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.750921	987.48729	0.7664	0.00037918	3.1247	0.001546	3.8911	0.0019251	494.752317956091	5.3455	0.23939	5.3455	5.2923	5.5317	0	666	52	0.877991458330206	0.0345727248070983	0.877991458330206	356.57657120495	0	14.0409380432616						572	28	2	NaN	NaN	NaN	0.00026896	1	4004	105.04	66.718	1	469590			11992	1396	10099	10360	11992	11992		
LIEVDDERK	9	Unmodified	_LIEVDDERK_			0	0	1	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	372.868027	1115.58225	0.9403	0.00035061	-0.096959	-3.6153E-05	0.84334	0.00031445	372.868145256255	3.7406	0.42564	3.7406	3.6962	4.1219	0	885	52	0.728786607772777	0.0349354475751698	0.728786607772777	443.264648643317	0	21.2485365804538						675	49	4	NaN	NaN	NaN	0.0096798	1	7147	62.88	35.144	1	658210			11993	1396	10100	10361	11993	11993		
LIEVDDERK	9	Unmodified	_LIEVDDERK_			0	0	1	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.798403	1115.58225	2.6223	0.0014653	-0.44511	-0.00024873	2.1772	0.0012166	558.798471268547	3.7406	0.17733	3.7406	3.6962	3.8736	0	618	43	0.910492137470517	0.0284065601691176	0.910492137470517	369.192132279215	0	11.518472360113						564	21	5	NaN	NaN	NaN	4.2296E-06	1	7149	129.72	66.841	1	503950			11994	1396	10100	10361	11994	11994		
LIFPYVELDLHSYDLGIENR	20	Unmodified	_LIFPYVELDLHSYDLGIENR_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	802.749514	2405.22671	-0.089832	-7.2113E-05	-0.025753	-2.0673E-05	-0.11559	-9.2786E-05	803.083750819301	19.171	0.05319	19.171	19.153	19.206	0	531	43	0.969216233931596	0.0282887809416775	0.969216233931596	585.630450801249	0	17.0929571291741						200	7	3	NaN	NaN	NaN	0.038001	1	36370	15.64	13.669	1	56476			11995	367	10101	10362	11995	11995		
LIFYDLR	7	Unmodified	_LIFYDLR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.268553	938.522553	-0.73201	-0.00034424	-1.3221	-0.00062174	-2.0541	-0.00096598	470.267880629665	13.088	0.18621	13.088	13.034	13.221	0	708	43	0.849494101904619	0.0285290397944454	0.849494101904619	345.250184637963	0	11.5947317756445						398	22	3	NaN	NaN	NaN	0.02927	1	3048	56.091	44.442	1	155130			11996	1801	10102	10363	11996	11996		
LIGEYGLR	8	Unmodified	_LIGEYGLR_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.763635	919.512717	-0.21599	-9.9522E-05	-0.061614	-2.8389E-05	-0.27761	-0.00012791	460.763684471382	8.2366	0.25728	8.2366	8.1567	8.414	0	738	52	0.829104889055312	0.0346833569079855	0.829104889055312	337.064131931751	0	14.1001648199053						763	30	4	NaN	NaN	NaN	0.0194	1	2699	56.091	22.278	1	758400			11997	1089	10103	10364	11997	11997		
LIGIDDVPDAR	11	Unmodified	_LIGIDDVPDAR_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.319502	1182.62445	1.5877	0.0009404	-0.26177	-0.00015505	1.3259	0.00078535	592.319374553098	10.853	0.24829	10.853	10.746	10.995	0	588	70	0.93076847747433	0.0465807171253665	0.93076847747433	377.152676613847	0	18.8747712966128						679	28	3	NaN	NaN	NaN	0.00018388	1	8949	85.716	64.441	1	334370			11998	1489	10104	10365	11998	11998		
LIGLAVDYFDGGK	13	Unmodified	_LIGLAVDYFDGGK_			0	0	0	Q6P1A2	Q6P1A2	Q6P1A2	LPCAT3	Lysophospholipid acyltransferase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.36391	1366.71327	0.32867	0.00022493	2.7595	0.0018885	3.0882	0.0021135	684.366542335788	15.704	0.15956	15.704	15.633	15.792	0	498	46	0.991429299781895	0.0302570607134584	0.991429299781895	401.108198927735	0	12.2412713950378						330	19	3	NaN	NaN	NaN	0.0018079	1	14402	57.293	32.039	1	89238			11999	2055	10105	10366	11999	11999		
LIGLSATLPNYEDVATFLR	19	Unmodified	_LIGLSATLPNYEDVATFLR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.0675	2092.12046	1.7574	0.0018402	-1.7656	-0.0018487	-0.0081838	-8.569E-06	1047.56657203889	19.862	0.062052	19.862	19.827	19.889	0	171	82	1.20972836110953	0.0536292490022801	1.20972836110953	487.723609457759	0	21.6215902154357						360	8	4	NaN	NaN	NaN	3.1976E-05	1	33225	93.649	91.102	1	87788			12000	350	10106	10367	12000	12000		
LIGNMALLPIR	11	Unmodified	_LIGNMALLPIR_			0	0	0	O15145	O15145	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.870651	1209.72675	0.047819	2.8972E-05	-1.5503	-0.00093927	-1.5025	-0.0009103	605.86999838126	15.624	0.19506	15.624	15.579	15.775	0	624	79	0.906433495720521	0.0527185204624995	0.906433495720521	367.197109676912	0	21.356325016305						960	23	5	NaN	NaN	NaN	3.2596E-17	1	9734	214.81	164.85	1	420070			12001	149	10107	10368	12001	12001		
LIGPLSHSILTEAIK	15	Unmodified	_LIGPLSHSILTEAIK_			0	0	0	Q99575	Q99575	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.318774	1590.93449	-1.595	-0.00084745	0.0088177	4.685E-06	-1.5862	-0.00084277	531.319076138917	14.019	0.11527	14.019	13.939	14.054	0	759	22	0.814815566123307	0.0142932978262608	0.814815566123307	493.78070268588	0	8.66178180410657						117	14	2	NaN	NaN	NaN	0.072818	1	21307	3.9827	1.6813	1	23925			12002	2652	10108	10369	12002	12002		
LIGPNCPGVINPGECK	16	Unmodified	_LIGPNCPGVINPGECK_			0	0	0	P53597	P53597	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.926557	1723.83856	3.074	0.0026526	-3.431	-0.0029607	-0.35702	-0.00030808	862.924424925472	9.1681	0.2838	9.1681	9.044	9.3278	0	342	79	1.09598084995137	0.0520885785221856	1.09598084995137	442.486173543771	0	21.0299986506506						1125	33	5	NaN	NaN	NaN	2.4431E-12	1	25158	154.09	149.84	1	305620			12003	1237	10109	10370	12003	12003		
LIGSPSLSGLNAK	13	Unmodified	_LIGSPSLSGLNAK_			0	0	0		REV__Q8IVF5	REV__Q8IVF5			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.864077	1255.7136	1.0428	0.0006558	1.7801	0.0011195	2.823	0.0017753	628.865385139011	11.855	0.20396	11.855	11.802	12.006	0	492	55	0.995464410099171	0.0363210277631717	0.995464410099171	403.096987201654	0	14.7076045259555						693	24	5	NaN	NaN	NaN	0.0069961	1	11096	33.426	0	1	572830	+		12004	3499	10110	10371	12004	12004		
LIGTNCIIYPVNSK	14	Unmodified	_LIGTNCIIYPVNSK_			0	0	0	Q9C0C9	Q9C0C9	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.429258	1590.84396	1.3658	0.0010877	-2.9669	-0.0023629	-1.6011	-0.0012752	796.427476314813	11.633	0.097626	11.633	11.571	11.669	0	363	31	1.08195024817156	0.0200506245124248	1.08195024817156	437.112699224915	0	8.10054123706948						226	12	4	NaN	NaN	NaN	0.0048856	1	21303	35.45	33.313	1	56700			12005	2820	10111	10372	12005	12005		
LIHDGCLLWK	10	Unmodified	_LIHDGCLLWK_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.893631	1253.65906	-1.6218	-0.00067936	-1.2019	-0.00050348	-2.8237	-0.0011828	418.892949845746	9.6824	0.070943	9.6824	9.647	9.7179	0	825	19	0.769815552739974	0.0122915375224674	0.769815552739974	467.590534740696	0	7.46595282786808						114	9	3	NaN	NaN	NaN	0.04862	1	11033	29.31	27.51	1	24804			12006	2449	10112	10373	12006	12006		
LIHEPSAALLAYGIGQDSPTGK	22	Unmodified	_LIHEPSAALLAYGIGQDSPTGK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.730342	2237.1692	0.32607	0.00024348	-1.0134	-0.00075672	-0.68731	-0.00051324	747.064701336168	13.105	0.11528	13.105	13.061	13.176	0	552	43	0.955063035883597	0.0283318814612601	0.955063035883597	577.327497344332	0	17.1263818245804						439	14	5	NaN	NaN	NaN	1.3262E-07	1	35070	101.52	98.778	1	79970			12007	1585	10113	10374	12007	12007		
LIHFSGVALGEACTIVLR	18	Unmodified	_LIHFSGVALGEACTIVLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.696027	1955.06625	0.37145	0.00024244	-1.9672	-0.001284	-1.5957	-0.0010415	653.029134347101	15.553	0.35468	15.553	15.508	15.863	0	663	43	0.880024865079826	0.0284736285227984	0.880024865079826	532.440629498851	0	17.2273731077132						848	41	6	NaN	NaN	NaN	1.2448E-07	1	30802	154.94	145.79	1	335340			12008	1461	10114	10375	12008	12008		
LIHFSGVALGEACTIVLR	18	Unmodified	_LIHFSGVALGEACTIVLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.540403	1955.06625	1.8398	0.0018003	0.23654	0.00023146	2.0763	0.0020317	979.042131485976	15.553	0.088685	15.553	15.526	15.615	0	177	43	1.2057522832638	0.0278363710639469	1.2057522832638	486.345216269079	0	11.2279164577618						266	11	4	NaN	NaN	NaN	0.00011789	1	30803	51.829	43.023	1	49324			12009	1461	10114	10375	12009	12009		
LIHIPINNIIVGG	13	Unmodified	_LIHIPINNIIVGG_			0	0	0	P60059	P60059	P60059	SEC61G	Protein transport protein Sec61 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.919187	1371.82382	0.3317	0.00022785	0.21959	0.00015084	0.55129	0.00037869	686.91925683971	16.431	0.20394	16.431	16.324	16.528	0	489	40	0.997481546940468	0.0262191597817407	0.997481546940468	403.541746864264	0	10.6072393740918						506	24	4	NaN	NaN	NaN	0.0058803	1	14552	43.734	40.126	1	228340			12010	1302	10115	10376	12010	12010		
LIHPDEDISLEER	13	Unmodified	_LIHPDEDISLEER_			0	0	0	O43670	O43670	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.598377	1564.7733	-1.0859	-0.00056751	-0.43603	-0.00022787	-1.522	-0.00079538	522.598237753979	8.485	0.13303	8.485	8.4406	8.5736	0	777	43	0.802556497112065	0.0286164420123584	0.802556497112065	486.421749402507	0	17.3441493968531						428	16	4	NaN	NaN	NaN	0.0026478	1	20489	48.785	32.906	1	141950			12011	216	10116	10377	12011	12011		
LIHQTNLILQTFK	13	Unmodified	_LIHQTNLILQTFK_			0	0	0	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.643481	1567.90861	-1.1955	-0.00062604	-0.071783	-3.7588E-05	-1.2673	-0.00066363	523.643402285344	11.89	0.10642	11.89	11.846	11.953	0	720	34	0.841341816837976	0.022426576308619	0.841341816837976	509.920222936098	0	13.5922933605791						342	13	4	NaN	NaN	NaN	0.0061359	1	20606	62.271	56.405	1	120390			12012	2747	10117	10378	12012	12012		
LIHQTNLILQTFK	13	Unmodified	_LIHQTNLILQTFK_			0	0	0	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.961583	1567.90861	1.4837	0.0011647	1.3775	0.0010813	2.8613	0.002246	784.962893344751	11.89	0.088702	11.89	11.855	11.944	0	333	34	1.10198982404297	0.0220268393331327	1.10198982404297	445.264961795609	0	8.90006383013832						269	11	4	NaN	NaN	NaN	3.1065E-05	1	20607	106.11	77.466	1	76624			12013	2747	10117	10378	12013	12013		
LIHTLDDR	8	Unmodified	_LIHTLDDR_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	328.182058	981.524344	-0.85844	-0.00028172	0.17061	5.5992E-05	-0.68782	-0.00022573	328.182140985489	3.9534	0.12414	3.9534	3.9268	4.0509	0	906	25	0.714399420407021	0.0164505330115733	0.714399420407021	435.23616354233	0	10.0222182040746						127	15	2	NaN	NaN	NaN	0.030305	1	3875	23.575	13.496	1	31512			12014	2786	10118	10379	12014	12014		
LIHTLDDR	8	Unmodified	_LIHTLDDR_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.769448	981.524344	1.7544	0.00086278	1.0647	0.0005236	2.8192	0.0013864	491.770262640732	3.9622	0.1064	3.9622	3.9179	4.0243	4.4409E-16	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	356.606338955382	0	7.4340564846122						152	13	3	NaN	NaN	NaN	0.019378	1	3876	51.43	36.895	1	37565			12015	2786	10118	10379	12015	12015		
LIIAGTSAYAR	11	Unmodified	_LIIAGTSAYAR_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.327131	1134.63971	1.4827	0.00084266	0.23925	0.00013597	1.7219	0.00097863	568.327167996862	8.2188	0.088806	8.2188	8.1656	8.2544	0	582	31	0.934820374997243	0.0202566836468107	0.934820374997243	378.979185988261	0	8.21212468685513						195	11	3	NaN	NaN	NaN	5.3291E-05	1	7671	79.059	57.131	1	66067			12016	954	10119	10380	12016	12016		
LIILEHYSQASEWAAK	16	Unmodified	_LIILEHYSQASEWAAK_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.328109	1857.9625	0.12115	7.5154E-05	0.030393	1.8854E-05	0.15154	9.4007E-05	620.662455794791	12.032	0.097545	12.032	11.997	12.094	0	612	52	0.914549654013882	0.0344912931175532	0.914549654013882	553.532701019191	0	20.8759125950247						401	12	4	NaN	NaN	NaN	1.0494E-08	1	28658	83.214	57.601	1	106420			12017	1092	10120	10381	12017	12017		
LIILEHYSQASEWAAK	16	Unmodified	_LIILEHYSQASEWAAK_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.988526	1857.9625	1.1864	0.0011033	0.82985	0.00077175	2.0162	0.0018751	930.490946606935	12.032	0.097545	12.032	11.997	12.094	0	201	43	1.18983705239708	0.0278707851664095	1.18983705239708	480.102496555076	0	11.2459378470236						366	12	4	NaN	NaN	NaN	4.4254E-05	1	28659	85.081	75.819	1	110480			12018	1092	10120	10381	12018	12018		
LIINELSNVMEANAAR	16	Unmodified	_LIINELSNVMEANAAR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.645333	1756.91417	-0.97871	-0.00057416	-0.84919	-0.00049817	-1.8279	-0.0010723	586.644455640459	16.227	0.053208	16.227	16.2	16.253	0	681	19	0.867820189810857	0.0122097592878956	0.867820189810857	525.473186786078	0	7.39312267475566						83	7	3	NaN	NaN	NaN	0.026455	1	26073	47.57	44.282	1	16438			12019	2594	10121	10382	12019	12019		
LIINELSNVMEANAAR	16	Unmodified	_LIINELSNVMEANAAR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.464361	1756.91417	1.9874	0.0017479	0.62551	0.00055011	2.6129	0.002298	879.465369640311	16.218	0.25715	16.218	16.12	16.377	0	279	46	1.13799159301878	0.0299664000670858	1.13799159301878	459.37837639286	0	12.0966765427849						671	30	5	NaN	NaN	NaN	2.5446E-06	1	26075	81.48	66.505	1	232670			12020	2594	10121	10382	12020	12020		
LIINSLYK	8	Unmodified	_LIINSLYK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.29731	962.580068	-0.11036	-5.3225E-05	-1.4266	-0.00068805	-1.537	-0.00074127	482.296975541846	10.605	0.21278	10.605	10.551	10.764	0	711	43	0.847456455381371	0.0285250764845424	0.847456455381371	344.297799767385	0	11.5889388881989						390	25	3	NaN	NaN	NaN	0.050075	1	3501	34.931	24.852	1	133200			12021	700	10122	10383	12021	12021		
LIIPGEIIK	9	Unmodified	_LIIPGEIIK_			0	0	0		REV__A6NHR9	REV__A6NHR9			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.328611	994.642668	-0.28479	-0.00014192	-2.5352	-0.0012634	-2.82	-0.0014053	498.327496786509	15.464	0.13319	15.464	15.42	15.553	0	687	43	0.863749705078866	0.028505272317873	0.863749705078866	350.757959280728	0	11.5756348027298						300	16	2	NaN	NaN	NaN	0.022723	1	4162	45.489	16.388	1	108300	+		12022	3481	10123	10384	12022	12022		
LIIPGEIIK	9	Unmodified	_LIIPGEIIK_			0	0	0		REV__A6NHR9	REV__A6NHR9			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.328611	994.642668	-0.58301	-0.00029053	-1.2005	-0.00059825	-1.7835	-0.00088878	498.327924264218	14.701	0.18622	14.701	14.613	14.799	0	672	55	0.873923798053065	0.0366191214696816	0.873923798053065	354.889524797391	0	14.8705672574946						514	22	3	NaN	NaN	NaN	0.012571	1	4165	67.464	36.902	1	164070	+		12023	3481	10123	10384	12023	12023		
LIIQIWDNDK	10	Unmodified	_LIIQIWDNDK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.34552	1256.67649	1.0075	0.00063409	-4.5653	-0.0028731	-3.5578	-0.0022391	629.34221231061	14.365	0.19507	14.365	14.249	14.444	0	567	70	0.944945209309785	0.0465291454574099	0.944945209309785	382.636902973971	0	18.8410586565682						408	23	2	NaN	NaN	NaN	0.0050796	1	11116	63.397	38.144	1	115890			12024	3136	10124	10385	12024	12024		
LIITSAEASPAECCQHAK	18	Unmodified	_LIITSAEASPAECCQHAK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.474599	1984.93465	1.579	0.0015686	-0.032354	-3.2143E-05	1.5466	0.0015365	993.47546558286	6.3565	0.06205	6.3565	6.3299	6.3919	0	102	34	1.25537494996371	0.0218010646059026	1.25537494996371	506.307016014151	0	8.79261766921934						180	8	3	NaN	NaN	NaN	5.5543E-08	1	31362	95.656	95.037	1	32431			12025	1784	10125	10386	12025	12025		
LIIVEGCQR	9	Unmodified	_LIIVEGCQR_			0	0	0	P05023;P13637;P50993;Q13733;P54707	P05023	P05023	ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.300059	1086.58556	1.2014	0.00065395	4.8271	0.0026274	6.0286	0.0032814	544.300640157317	6.8974	0.1951	6.8974	6.8175	7.0126	0	615	46	0.912521036363781	0.0304334915876326	0.912521036363781	370.135282109621	0	12.3443828092513						463	23	4	NaN	NaN	NaN	0.0014589	1	6387	85.813	41.046	1	152300			12026	522	10126	10387	12026	12026		
LIIWDSYTTNK	11	Unmodified	_LIIWDSYTTNK_			0	0	0	P62873;P62879;Q9HAV0	P62873;P62879;Q9HAV0	P62873	GNB1;GNB2;GNB4	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2;Guanine nucleotide-binding protein subunit beta-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.356085	1352.69762	1.0137	0.00068662	-0.89444	-0.00060585	0.11924	8.0769E-05	677.355475166111	12.556	0.19507	12.556	12.485	12.68	0	513	37	0.981336640919867	0.0242341119852805	0.981336640919867	397.066158041729	0	9.80555024474421						713	23	5	NaN	NaN	NaN	6.5678E-05	1	13973	90.761	36.325	1	427960			12027	1408;1410;2946	10127	10388	12027	12027		
LILADALCYAHTFNPK	16	Unmodified	_LILADALCYAHTFNPK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.32219	1845.94474	0.19863	0.00012242	-1.5196	-0.00093655	-1.321	-0.00081413	616.321676097998	15.686	0.19508	15.686	15.615	15.81	0	597	43	0.924688525662974	0.0283790126462771	0.924688525662974	559.696248854323	0	17.1772726528889						613	23	5	NaN	NaN	NaN	2.9187E-05	1	28383	83.214	66.455	1	210760			12028	880	10128	10389	12028	12028		
LILADALCYAHTFNPK	16	Unmodified	_LILADALCYAHTFNPK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.979647	1845.94474	0.49848	0.00046059	0.58756	0.00054289	1.086	0.0010035	923.979835682068	15.704	0.15068	15.704	15.633	15.783	0	96	58	1.2593374219024	0.0376615550764219	1.2593374219024	508.170601900693	0	15.1972734065109						524	18	4	NaN	NaN	NaN	3.9296E-07	1	28385	128.57	119.31	1	136790			12029	880	10128	10389	12029	12029		
LILDSAR	7	Unmodified	_LILDSAR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	394.237253	786.459953	-1.505	-0.00059333	0.21024	8.2883E-05	-1.2948	-0.00051045	394.237164551064	6.0195	0.18622	6.0195	5.984	6.1702	0	798	46	0.788241307691771	0.0306839532114277	0.788241307691771	321.248133570236	0	12.5052602591871						309	22	3	NaN	NaN	NaN	0.0086281	1	879	69.093	22.291	1	102490			12030	888	10129	10390	12030	12030		
LILDVFCGSQMHFVR	15	Unmodified	_LILDVFCGSQMHFVR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.976137	1820.90658	0.26444	0.00016077	-1.6224	-0.00098636	-1.3579	-0.00082559	608.309658598237	16.138	0.23943	16.138	16.085	16.324	0	615	55	0.912521036363781	0.0365176629260625	0.912521036363781	552.388079309624	0	22.1057059297889						770	28	5	NaN	NaN	NaN	1.4583E-06	1	27747	110.52	90.186	1	494720			12031	653	10130	10391	12031	12031		
LILDVFCGSQMHFVR	15	Unmodified	_LILDVFCGSQMHFVR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.460567	1820.90658	1.3656	0.0012447	0.27492	0.00025058	1.6406	0.0014953	911.461309519817	16.138	0.18623	16.138	16.094	16.28	0	180	49	1.203763835057	0.0318260997868145	1.203763835057	485.795238798714	0	12.8438546629333						592	22	5	NaN	NaN	NaN	0.00010258	1	27748	58.476	53.089	1	179540			12032	653	10130	10391	12032	12032		
LILDVFCGSQMHFVR	15	Oxidation (M)	_LILDVFCGSQM(Oxidation (M))HFVR_	LILDVFCGSQM(1)HFVR	LILDVFCGSQM(46)HFVR	0	1	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.307775	1836.9015	0.30375	0.00018629	-0.35805	-0.00021959	-0.054296	-3.33E-05	613.307771787141	14.347	0.11525	14.347	14.302	14.418	0	624	40	0.906433495720521	0.026386663985959	0.906433495720521	548.66694689523	0	15.9719278207149						396	14	5	NaN	NaN	NaN	0.0021337	1	28154	46.068	37.694	1	111180			12033	653	10130	10392	12033	12033	196	
LILEVHQFSR	10	Unmodified	_LILEVHQFSR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.35368	1240.69281	0.78603	0.0004884	0.23501	0.00014602	1.021	0.00063442	621.353854786266	9.3898	0.11526	9.3898	9.3544	9.4696	0	501	31	0.98941132619024	0.0201839240087274	0.98941132619024	400.698648799444	0	8.17422528293616						212	14	3	NaN	NaN	NaN	2.6899E-07	1	10651	115.86	63.997	1	61179			12034	1511	10131	10393	12034	12034		
LILGLMMPPAHYDAK	15	Unmodified	_LILGLMMPPAHYDAK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.298328	1668.87316	0.44669	0.00024894	-2.265	-0.0012623	-1.8183	-0.0010134	557.297013208833	14.489	0.31036	14.489	14.4	14.71	0	645	52	0.892219381832517	0.0345487443998951	0.892219381832517	540.469953470975	0	20.9282141348921						1066	36	4	NaN	NaN	NaN	0.050362	1	23602	30.068	28.084	1	269490			12035	573	10132	10394	12035	12035		
LILPELGPVFK	11	Unmodified	_LILPELGPVFK_			0	0	0	Q6P3W7	Q6P3W7	Q6P3W7	SCYL2	SCY1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.381374	1224.7482	0.164	0.00010059	-2.3331	-0.0014311	-2.1691	-0.0013305	613.379796944489	17.557	0.12415	17.557	17.486	17.61	0	576	37	0.938871150116794	0.0242979231728671	0.938871150116794	380.285018973635	0	9.841751100419						287	15	3	NaN	NaN	NaN	0.0051759	1	10150	46.447	21.193	1	67660			12036	2065	10133	10395	12036	12036		
LILPHVPAILQYLSK	15	Unmodified	_LILPHVPAILQYLSK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.018548	1704.03381	-0.92633	-0.0005271	0.78525	0.00044682	-0.14108	-8.0276E-05	569.353359397535	18.745	0.18622	18.745	18.648	18.834	0	702	22	0.853568545818287	0.0142575833837986	0.853568545818287	516.969087713613	0	8.6351938705252						252	22	3	NaN	NaN	NaN	0.00089531	1	24613	60	57.329	1	53644			12037	351	10134	10396	12037	12037		
LILPVGPAGGNQMLEQYDK	19	Unmodified	_LILPVGPAGGNQMLEQYDK_			0	0	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.03261	2042.05066	1.5122	0.0015455	-0.16259	-0.00016617	1.3496	0.0013793	1022.53429533694	15.287	0.18619	15.287	15.216	15.402	0	165	97	1.21370334790578	0.063591139351076	1.21370334790578	489.405296363789	0	25.6420487377945						1381	22	5	NaN	NaN	NaN	3.9692E-07	1	32386	76.563	65.592	1	421030			12038	799	10135	10397	12038	12038		
LILPVGPAGGNQMLEQYDK	19	Oxidation (M)	_LILPVGPAGGNQM(Oxidation (M))LEQYDK_	LILPVGPAGGNQM(1)LEQYDK	LILPVGPAGGNQM(48)LEQYDK	0	1	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.03006	2058.04558	1.8585	0.0019143	-5.6021	-0.0057703	-3.7436	-0.003856	1031.02570567107	13.309	0.14189	13.309	13.23	13.371	0	183	76	1.20177511391933	0.0496771463403538	1.20177511391933	484.570021482555	0	20.0304163320801						1118	17	6	NaN	NaN	NaN	0.026175	1	32676	47.915	41.059	1	255470			12039	799	10135	10398	12039	12039	263	
LIMGIGHR	8	Unmodified	_LIMGIGHR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.760372	895.506192	0.34665	0.00015556	0.24109	0.00010819	0.58774	0.00026375	448.760748377511	5.7445	0.20395	5.7445	5.6913	5.8953	0	738	40	0.829104889055312	0.0265299389954775	0.829104889055312	337.197094358534	0	10.7897305405799						397	24	3	NaN	NaN	NaN	0.0011463	1	2265	84.064	48.986	1	108710			12040	1235	10136	10399	12040	12040		
LIMNYLVTEGFK	12	Unmodified	_LIMNYLVTEGFK_			0	0	0	Q9NWU2	Q9NWU2	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.383788	1426.75302	0.80494	0.00057504	-0.5265	-0.00037612	0.27845	0.00019892	714.382686882003	15.978	0.15959	15.978	15.925	16.085	1.7764E-15	465	43	1.01360860968299	0.0282028744341156	1.01360860968299	409.908576285944	0	11.4053886243875						321	19	3	NaN	NaN	NaN	0.00043973	1	16288	60.547	52.074	1	77717			12041	3085	10137	10400	12041	12041		
LINAVELK	8	Unmodified	_LINAVELK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.28166	898.548768	-0.23137	-0.00010418	-0.70634	-0.00031805	-0.93772	-0.00042224	450.281423597931	8.0237	0.10655	8.0237	7.9793	8.0858	0	747	40	0.822982596624503	0.0265336280455829	0.822982596624503	334.690047999789	0	10.7906792690497						192	13	3	NaN	NaN	NaN	0.028599	1	2302	60.589	13.24	1	62954			12042	1284	10138	10401	12042	12042		
LINDGILSQAFSIAPEYR	18	Unmodified	_LINDGILSQAFSIAPEYR_			0	0	0	Q8NCG7	Q8NCG7	Q8NCG7	DAGLB	Sn1-specific diacylglycerol lipase beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.03092	2006.04729	0.51242	0.00051448	-0.62143	-0.00062393	-0.10901	-0.00010945	1004.53159190732	18.178	0.053198	18.178	18.142	18.195	0	201	31	1.18983705239708	0.0199077014377831	1.18983705239708	479.839763962758	0	8.02841594124351						109	7	3	NaN	NaN	NaN	0.048727	1	31738	19.006	18.386	1	16349			12043	2301	10139	10402	12043	12043		
LINLVGESLR	10	Unmodified	_LINLVGESLR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.334956	1112.65536	0.40858	0.00022772	-0.5558	-0.00030976	-0.14722	-8.205E-05	557.334539091337	12.272	0.15964	12.272	12.21	12.369	0	615	49	0.912521036363781	0.0324511442563469	0.912521036363781	370.02670237247	0	13.1589184455824						383	19	3	NaN	NaN	NaN	0.0032887	1	7066	60.892	28.94	1	125190			12044	1081	10140	10403	12044	12044		
LINQSLVMGIEVGK	14	Unmodified	_LINQSLVMGIEVGK_			0	0	0	Q9P2F6	Q9P2F6	Q9P2F6	ARHGAP20	Rho GTPase-activating protein 20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.926351	1499.83815	1.2313	0.00092465	-4.3724	-0.0032833	-3.141	-0.0023587	750.923072811932	13.07	0.12412	13.07	13.026	13.15	0	417	61	1.04580932352505	0.0401842911414492	1.04580932352505	422.732795551325	0	16.2431308933213						478	15	4	NaN	NaN	NaN	0.0049626	1	18529	34.953	18.3	1	208540			12045	3159	10141	10404	12045	12045		
LINQVLELQHTLEDLSAR	18	Unmodified	_LINQVLELQHTLEDLSAR_			0	0	0	Q9UIL1	Q9UIL1	Q9UIL1	SCOC	Short coiled-coil protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.051416	2091.13242	-0.19155	-0.00013371	-1.2683	-0.00088536	-1.4599	-0.0010191	698.384785673211	18.435	0.079799	18.435	18.399	18.479	0	615	52	0.912521036363781	0.0344912931175532	0.912521036363781	551.848711772226	0	20.8586705574774						281	10	4	NaN	NaN	NaN	0.00068369	1	33210	51.07	33.655	1	48433			12046	3240	10142	10405	12046	12046		
LINYHQEQAVNCLLGNVFYER	21	Unmodified	_LINYHQEQAVNCLLGNVFYER_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.760307	2579.25909	0.54126	0.0004659	-0.78885	-0.00067901	-0.24758	-0.00021311	861.09453569673	16.236	0.053193	16.236	16.218	16.271	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	592.724181731466	0	10.9772344178343						135	7	4	NaN	NaN	NaN	0.00049063	1	37160	62.304	60.969	1	21259			12047	971	10143	10406	12047	12047		
LIPEMDQIFTEVEMTTLEK	19	Unmodified	_LIPEMDQIFTEVEMTTLEK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.377701	2266.11127	0.29002	0.00021936	-1.7976	-0.0013596	-1.5075	-0.0011403	756.710494927775	20.084	0.035463	20.084	20.075	20.111	0	531	19	0.969216233931596	0.0121254384381547	0.969216233931596	585.83684033359	0	7.32914729817594						64	5	4	NaN	NaN	NaN	0.0044917	1	35335	35.182	34.24	1	43251			12048	3410	10144	10407	12048	12048		
LIPLLLQLTSR	11	Unmodified	_LIPLLLQLTSR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.91083	1265.80711	0.28006	0.00017754	-0.53413	-0.00033859	-0.25407	-0.00016106	633.910621503237	18.834	0.15073	18.834	18.763	18.914	0	537	31	0.965173861991602	0.0202146590130609	0.965173861991602	390.797438333576	0	8.18488488984758						368	18	4	NaN	NaN	NaN	0.00025744	1	11396	88.181	74.186	1	127960			12049	1452;1818	10145	10408	12049	12049		
LIPLLLQLTSR	11	Unmodified	_LIPLLLQLTSR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.91083	1265.80711	0.012628	8.0049E-06	0.49719	0.00031517	0.50981	0.00032318	633.910987151091	18.825	0.09753	18.825	18.789	18.887	0	492	28	0.995464410099171	0.0181567430371361	0.995464410099171	403.062030999879	0	7.35163773877355						159	12	3	NaN	NaN	NaN	0.00012482	1	11397	74.269	60.274	1	32347			12050	1452;1818	10145	10408	12050	12050		
LIPLLLSSLNDEVPEVR	17	Unmodified	_LIPLLLSSLNDEVPEVR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.046041	1906.07753	0.77999	0.00074415	0.029621	2.826E-05	0.80962	0.00077241	954.547525364001	19.179	0.070943	19.179	19.144	19.215	0	201	61	1.18983705239708	0.039826354451779	1.18983705239708	480.01267547675	0	16.0670361679945						334	9	4	NaN	NaN	NaN	1.1054E-10	1	29729	111.98	99.296	1	84205			12051	2192	10146	10409	12051	12051		
LIPTLVSIMQAPADK	15	Unmodified	_LIPTLVSIMQAPADK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.955109	1595.89566	0.78837	0.00062987	-0.57602	-0.00046022	0.21234	0.00016965	798.954910971767	17.025	0.2483	17.025	16.892	17.14	0	360	40	1.08395544855938	0.0260676102408008	1.08395544855938	437.910836034992	0	10.5311422246687						717	29	5	NaN	NaN	NaN	0.00097438	1	21461	41.87	31.848	1	280930			12052	2594	10147	10410	12052	12052		
LIPTLVSIMQAPADK	15	Unmodified	_LIPTLVSIMQAPADK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.955109	1595.89566	0.60238	0.00048128	1.5121	0.0012081	2.1145	0.0016894	798.956397243084	17.043	0.15074	17.043	16.972	17.122	0	309	40	1.11800162319566	0.0260102225300953	1.11800162319566	451.665257410737	0	10.5079577798699						489	18	4	NaN	NaN	NaN	0.0036853	1	21462	70.195	53.203	1	143140			12053	2594	10147	10410	12053	12053		
LIPVPMVGFK	10	Unmodified	_LIPVPMVGFK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.830463	1099.64637	-0.5717	-0.00031491	-2.8577	-0.0015741	-3.4294	-0.001889	550.828810869862	15.171	0.12417	15.171	15.083	15.207	0	672	43	0.873923798053065	0.0284696767536509	0.873923798053065	354.426847416396	0	11.5461071105281						204	15	3	NaN	NaN	NaN	0.04194	1	6719	26.456	21.917	1	46285			12054	2131	10148	10411	12054	12054		
LIQDQQEQIQHLK	13	Unmodified	_LIQDQQEQIQHLK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.96165	1619.86312	-0.016736	-9.0537E-06	-0.49236	-0.00026635	-0.5091	-0.0002754	540.961500351995	5.9307	0.079847	5.9307	5.9041	5.984	0	723	28	0.839303037468863	0.0183490160938558	0.839303037468863	508.541886988563	0	11.1178476094806						181	10	4	NaN	NaN	NaN	0.00095762	1	22194	66.664	57.402	1	50613			12055	2436	10149	10412	12055	12055		
LIQDQQEQIQHLK	13	Unmodified	_LIQDQQEQIQHLK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.938836	1619.86312	2.7159	0.0022024	-2.2203	-0.0018005	0.49557	0.00040187	810.936738110148	5.9396	0.070975	5.9396	5.9041	5.9751	0	309	28	1.11800162319566	0.0180045964949538	1.11800162319566	451.607769689086	0	7.27281204118162						144	9	3	NaN	NaN	NaN	2.5627E-07	1	22195	115.04	93.033	1	35595			12056	2436	10149	10412	12056	12056		
LIQEIVDK	8	Unmodified	_LIQEIVDK_			0	0	0	Q06787	Q06787	Q06787	FMR1	Fragile X mental retardation protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.2844	956.554247	-0.53932	-0.00025849	-3.2698	-0.0015672	-3.8091	-0.0018257	479.28277962991	7.2698	0.12414	7.2698	7.2255	7.3496	0	750	28	0.820941264895493	0.0183770979161022	0.820941264895493	333.555014239816	0	7.4667621414697						187	15	3	NaN	NaN	NaN	0.033429	1	3370	43.734	17.511	1	55225			12057	1563	10150	10413	12057	12057		
LIQEQHPEEELIK	13	Unmodified	_LIQEQHPEEELIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.42777	1604.84099	2.6808	0.0021539	-2.783	-0.002236	-0.10218	-8.2095E-05	803.426198706665	7.1545	0.17733	7.1545	7.0836	7.261	0	354	43	1.08796502040166	0.0280670092920567	1.08796502040166	439.50960563873	0	11.3383426434577						342	21	3	NaN	NaN	NaN	6.1542E-06	1	21748	104.04	91.46	1	144660			12058	1703	10151	10414	12058	12058		
LIQEQHPEEELIK	13	Unmodified	_LIQEQHPEEELIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.954272	1604.84099	0.62341	0.00033412	0.27849	0.00014926	0.90191	0.00048338	535.954528327738	7.1634	0.16848	7.1634	7.1102	7.2787	0	684	46	0.86578508874114	0.0305265242845556	0.86578508874114	524.629197784496	0	18.4977844442221						516	20	4	NaN	NaN	NaN	0.00098843	1	21749	79.889	62.158	1	241070			12059	1703	10151	10414	12059	12059		
LIQESDQHLK	10	Unmodified	_LIQESDQHLK_			0	0	0	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.21906	1209.63535	-0.76619	-0.00030971	0.00012468	5.0399E-08	-0.76606	-0.00030966	404.218973373677	3.2084	0.15076	3.2084	3.1641	3.3149	0	855	40	0.749315378969369	0.0266595150124577	0.749315378969369	455.318713478044	0	16.1995555117481						165	18	2	NaN	NaN	NaN	0.052294	1	9723	25.254	20.347	1	40706			12060	119	10152	10415	12060	12060		
LIQESDQHLK	10	Unmodified	_LIQESDQHLK_			0	0	0	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.824952	1209.63535	1.9682	0.0011924	-1.0595	-0.00064185	0.90871	0.00055052	605.824387014871	3.2084	0.13302	3.2084	3.1818	3.3149	0	552	25	0.955063035883597	0.0161829214477363	0.955063035883597	386.897312293363	0	6.55572310720947						171	16	3	NaN	NaN	NaN	0.0080273	1	9724	55.235	39.653	1	33155			12061	119	10152	10415	12061	12061		
LIQFCAIDELGTNYPK	16	Unmodified	_LIQFCAIDELGTNYPK_			0	0	0	Q9UHR5	Q9UHR5	Q9UHR5	SAP30BP	SAP30-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.474394	1880.93424	0.42571	0.0004008	1.5267	0.0014373	1.9524	0.0018381	941.47534531541	15.65	0.097529	15.65	15.615	15.712	0	123	28	1.24149774378079	0.0178494602725052	1.24149774378079	500.902381652978	0	7.20165397521396						209	12	3	NaN	NaN	NaN	0.02761	1	29170	30.875	27.587	1	41145			12062	3222	10153	10416	12062	12062		
LIQLMEEIMAEK	12	Unmodified	_LIQLMEEIMAEK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.380388	1446.74622	1.2002	0.00086941	-1.0939	-0.00079243	0.10627	7.6982E-05	724.380128934314	17.716	0.17734	17.716	17.663	17.841	0	441	43	1.02971785871157	0.0281795132980842	1.02971785871157	416.367984848633	0	11.3944291309267						570	21	5	NaN	NaN	NaN	0.0025573	1	16891	53.028	39.033	1	193580			12063	2435	10154	10417	12063	12063		
LIQNLDANHDGR	12	Unmodified	_LIQNLDANHDGR_			0	0	0	Q96FQ6	Q96FQ6	Q96FQ6	S100A16	Protein S100-A16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	455.900502	1364.67968	-0.89784	-0.00040933	0.13003	5.9282E-05	-0.76781	-0.00035004	455.900501211214	4.2194	0.15073	4.2194	4.1928	4.3435	0	798	25	0.788241307691771	0.0163681894120964	0.788241307691771	478.358525677289	0	9.93333244372263						177	18	3	NaN	NaN	NaN	0.00013398	1	14332	83.438	78.287	1	46651			12064	2527	10155	10418	12064	12064		
LIQNLDANHDGR	12	Unmodified	_LIQNLDANHDGR_			0	0	0	Q96FQ6	Q96FQ6	Q96FQ6	S100A16	Protein S100-A16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.347114	1364.67968	2.2731	0.0015533	-1.5199	-0.0010386	0.75323	0.00051472	683.346143513298	4.2283	0.070935	4.2283	4.2017	4.2726	0	471	22	1.00957851518677	0.014108255116009	1.00957851518677	408.457042570259	0	5.70794254614833						76	9	2	NaN	NaN	NaN	0.0025869	1	14335	52.837	43.323	1	17207			12065	2527	10155	10418	12065	12065		
LIQNNHYAMEDVATR	15	Unmodified	_LIQNNHYAMEDVATR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.289549	1773.84682	-0.51671	-0.00030604	0.7201	0.00042651	0.20339	0.00012047	592.290076249151	6.5781	0.13302	6.5781	6.5427	6.6757	0	756	31	0.816857749704129	0.0204204181290417	0.816857749704129	494.578023701364	0	12.3638296203654						333	16	5	NaN	NaN	NaN	8.2279E-05	1	26504	87.573	78.311	1	131750			12066	1703	10156	10419	12066	12066		
LIQNNHYAMEDVATR	15	Unmodified	_LIQNNHYAMEDVATR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.930685	1773.84682	2.5096	0.0022283	-0.91321	-0.00081086	1.5964	0.0014175	887.929728914378	6.5693	0.079805	6.5693	6.5427	6.6225	0	252	31	1.15595906938629	0.0199542576953273	1.15595906938629	466.596520636559	0	8.05442637122792						197	10	4	NaN	NaN	NaN	3.2903E-12	1	26505	88.42	74.622	1	50161			12067	1703	10156	10419	12067	12067		
LIQQQLEK	8	Unmodified	_LIQQQLEK_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.295299	998.576045	1.4132	0.00070699	1.2951	0.00064794	2.7083	0.0013549	500.295622315813	4.4499	0.13299	4.4499	4.4145	4.5475	0	663	34	0.880024865079826	0.0223674774771112	0.880024865079826	357.347875859662	0	9.08266445864518						262	16	3	NaN	NaN	NaN	0.0028771	1	4262	93.561	37.47	1	108200			12068	3439	10157	10420	12068	12068		
LIQSHPESAEDLQEK	15	Unmodified	_LIQSHPESAEDLQEK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.428498	1722.84244	3.2619	0.0028132	-1.8416	-0.0015882	1.4204	0.001225	862.427117330849	4.6095	0.088653	4.6095	4.5829	4.6716	0	297	64	1.12600091227925	0.042016526855482	1.12600091227925	454.608423768705	0	16.9636337215231						263	11	4	NaN	NaN	NaN	9.7958E-07	1	25127	89.359	82.983	1	61906			12069	1703	10158	10421	12069	12069		
LIQSHPESAEDLQEK	15	Unmodified	_LIQSHPESAEDLQEK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.288091	1722.84244	0.72263	0.00041572	1.9027	0.0010946	2.6253	0.0015103	575.289304798751	4.6095	0.133	4.6095	4.5829	4.7159	0	687	58	0.863749705078866	0.0386884208613425	0.863749705078866	523.089339427768	0	23.4298204594065						403	16	4	NaN	NaN	NaN	0.00023685	1	25129	90.156	80.894	1	130550			12070	1703	10158	10421	12070	12070		
LIRDEGLAVMDK	12	Unmodified	_LIRDEGLAVMDK_			0	0	1	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.914872	1358.72279	0.22266	0.00010107	-2.7563	-0.0012511	-2.5336	-0.0011501	453.913462405314	7.7132	0.12423	7.7132	7.66	7.7842	0	858	28	0.747263789720611	0.018464305033006	0.747263789720611	453.510497034584	0	11.2058904340161						252	15	4	NaN	NaN	NaN	0.0037856	1	14158	82.437	64.967	1	77156			12071	1596	10159	10422	12071	12071		
LISEILSESVVPDVR	15	Unmodified	_LISEILSESVVPDVR_			0	0	0	Q969G3	Q969G3	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.464352	1654.91415	1.564	0.0012957	0.5445	0.0004511	2.1085	0.0017468	828.464928930664	16.271	0.10639	16.271	16.218	16.324	0	270	40	1.14398322290989	0.0259601635966487	1.14398322290989	462.019821644376	0	10.4845157818605						337	13	4	NaN	NaN	NaN	4.6421E-08	1	23197	124.06	108.18	1	78987			12072	2458	10160	10423	12072	12072		
LISEMCCEAVK	11	Unmodified	_LISEMCCEAVK_			0	0	0	Q8WTT2	Q8WTT2	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.306366	1338.59818	1.2788	0.00085719	2.1743	0.0014575	3.4531	0.0023147	670.307680185849	7.1191	0.097543	7.1191	7.0747	7.1723	0	522	46	0.975277694896658	0.0302989286426463	0.975277694896658	394.656627588372	0	12.2607879378544						244	12	3	NaN	NaN	NaN	0.028665	1	13543	41.796	39.996	1	80797			12073	2361	10161	10424	12073	12073		
LISGEEHFSSK	11	Unmodified	_LISGEEHFSSK_			0	0	0	Q9BTE7	Q9BTE7	Q9BTE7	DCUN1D5	DCN1-like protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.875182	1232.60372	-0.50544	-0.00020818	0.60437	0.00024892	0.098927	4.0746E-05	412.209663454979	4.0686	0.1419	4.0686	3.9977	4.1396	0	822	31	0.771863999559055	0.0204773388322395	0.771863999559055	468.921858768074	0	12.4403674654122						197	17	3	NaN	NaN	NaN	0.013022	1	10394	32.549	15.896	1	43639			12074	2736	10163	10425	12074	12074		
LISGEEHFSSK	11	Unmodified	_LISGEEHFSSK_			0	0	0	Q9BTE7	Q9BTE7	Q9BTE7	DCUN1D5	DCN1-like protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.309135	1232.60372	2.4017	0.0014826	0.17644	0.00010892	2.5781	0.0015915	617.30907184856	4.0686	0.10642	4.0686	4.0332	4.1396	0	549	25	0.957085760909907	0.0161806815311534	0.957085760909907	387.635209491881	0	6.55343766590681						158	13	3	NaN	NaN	NaN	0.055213	1	10397	43.168	40.066	1	41601			12075	2736	10163	10425	12075	12075		
LISLFQAMK	9	Unmodified	_LISLFQAMK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.804445	1049.59434	-0.99165	-0.00052142	-0.96532	-0.00050757	-1.957	-0.001029	525.804189259712	14.861	0.22169	14.861	14.764	14.985	0	669	79	0.875957769340875	0.0529236925472962	0.875957769340875	355.461316771001	0	21.4762926931981						584	26	4	NaN	NaN	NaN	0.0088261	1	5467	75.243	32.409	1	239120			12076	1816	10164	10426	12076	12076		
LISLTDENALSGNEELTVK	19	Unmodified	_LISLTDENALSGNEELTVK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.53369	2045.05283	1.7509	0.0017921	-5.8063	-0.005943	-4.0555	-0.0041509	1024.02753199831	14.338	0.25712	14.338	14.285	14.542	0	159	82	1.21767724410157	0.0536955167423183	1.21767724410157	491.002853640254	0	21.6515928797033						503	30	3	NaN	NaN	NaN	0.0012941	1	32446	56.08	49.876	1	121370			12077	700	10165	10427	12077	12077		
LISLTDENALSGNEELTVK	19	Unmodified	_LISLTDENALSGNEELTVK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.53369	2045.05283	2.1748	0.002226	-1.3514	-0.0013832	0.82338	0.00084276	1023.53170767037	13.903	0.33695	13.903	13.824	14.161	1.7764E-15	156	91	1.21966378336455	0.0596330468528059	1.21966378336455	491.803869216146	0	24.0457768570077						1723	39	5	NaN	NaN	NaN	1.934E-26	1	32448	200.96	186.57	1	634310			12078	700	10165	10427	12078	12078		
LISPESTVMLLEAQAATGGIIDPHR	25	Unmodified	_LISPESTVMLLEAQAATGGIIDPHR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	873.798539	2618.37379	1.3605	0.0011888	0.5689	0.0004971	1.9294	0.0016859	874.132856436004	19.312	0.18624	19.312	19.242	19.428	0	333	31	1.10198982404297	0.0200257779077562	1.10198982404297	665.54501769338	0	12.0945370103724						307	22	4	NaN	NaN	NaN	0.00053028	1	37310	47.148	47.023	1	70007			12079	718	10166	10428	12079	12079		
LISPESTVMLLEAQAATGGIIDPHRNEK	28	Unmodified	_LISPESTVMLLEAQAATGGIIDPHRNEK_			0	0	1	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	748.395844	2989.55427	-0.11809	-8.8378E-05	1.2645	0.00094633	1.1464	0.00085795	748.6476729524	18	0.13301	18	17.929	18.062	0	528	28	0.971237000454584	0.0181894169559895	0.971237000454584	781.588501025636	0	14.6376622044961						309	16	4	NaN	NaN	NaN	0.00011295	1	38209	59.09	58.904	1	59478			12080	718	10167	10429	12080	12080		
LISQAYEVLSDPK	13	Unmodified	_LISQAYEVLSDPK_			0	0	0	Q8WW22	Q8WW22	Q8WW22	DNAJA4	DnaJ homolog subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.893032	1461.77151	1.1726	0.00085821	1.9616	0.0014357	3.1342	0.0022939	732.395848299932	11.669	0.22174	11.669	11.553	11.775	0	408	70	1.0518390438467	0.0461960076495578	1.0518390438467	425.271298353383	0	18.6776068703659						524	26	3	NaN	NaN	NaN	3.3734E-05	1	17324	106.11	84.069	1	170810			12081	2387	10168	10430	12081	12081		
LISQDIHSNTYNYK	14	Unmodified	_LISQDIHSNTYNYK_			0	0	0	Q96D46	Q96D46	Q96D46	NMD3	60S ribosomal export protein NMD3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.420476	1694.8264	2.8574	0.0024243	-2.1411	-0.0018165	0.71632	0.00060774	848.418916048177	6.0195	0.053193	6.0195	5.9929	6.0461	0	285	55	1.13399579921816	0.035986907125598	1.13399579921816	457.896657517669	0	14.5311688972492						219	7	3	NaN	NaN	NaN	0.00011708	1	24340	84.102	78.714	1	48494			12082	2501	10169	10431	12082	12082		
LISQIVSSITASLR	14	Unmodified	_LISQIVSSITASLR_			0	0	0	P68363;Q9H853;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.631241	1486.87189	-1.9413	-0.00096411	1.7337	0.00086103	-0.20756	-0.00010308	496.631995394917	19.268	0.070935	19.268	19.242	19.312	0	708	19	0.849494101904619	0.0122250304195799	0.849494101904619	515.106402998111	0	7.41287247533984						94	9	3	NaN	NaN	NaN	0.065185	1	18153	21.361	19.859	1	22120			12083	1447;2696;1448	10170	10432	12083	12083		
LISQIVSSITASLR	14	Unmodified	_LISQIVSSITASLR_			0	0	0	P68363;Q9H853;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.443223	1486.87189	0.26503	0.0001973	0.40098	0.00029851	0.66601	0.00049581	744.443396238777	19.268	0.1596	19.268	19.224	19.383	0	438	61	1.03173026378327	0.0402508992087349	1.03173026378327	417.075047453116	0	16.2713514246977						547	19	4	NaN	NaN	NaN	9.8325E-12	1	18154	163.59	144.26	1	277560			12084	1447;2696;1448	10170	10432	12084	12084		
LISQIVSSITASLR	14	Unmodified	_LISQIVSSITASLR_			0	0	0	P68363;Q9H853;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Putative tubulin-like protein alpha-4B;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.443223	1486.87189	0.72876	0.00054252	0.93669	0.00069731	1.6654	0.0012398	744.44385055616	19.268	0.097552	19.268	19.233	19.33	0	327	55	1.10599442759226	0.0360563412671218	1.10599442759226	447.096195858081	0	14.5757090767495						354	12	4	NaN	NaN	NaN	3.738E-06	1	18155	110.44	92.709	1	124240			12085	1447;2696;1448	10170	10432	12085	12085		
LISSDGHEFIVK	12	Unmodified	_LISSDGHEFIVK_			0	0	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	448.910115	1343.70852	-0.20961	-9.4095E-05	-0.21098	-9.471E-05	-0.42059	-0.00018881	448.910040746936	7.9704	0.18635	7.9704	7.9172	8.1036	0	762	49	0.812773098473386	0.0326863119165151	0.812773098473386	493.323163778463	0	19.8393805567531						399	22	4	NaN	NaN	NaN	0.033406	1	13717	37.749	27.047	1	215100			12086	1835	10171	10433	12086	12086		
LISSDGHEFIVK	12	Unmodified	_LISSDGHEFIVK_			0	0	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.861534	1343.70852	2.2773	0.0015323	2.5442	0.0017119	4.8215	0.0032442	672.864031335547	7.9615	0.27504	7.9615	7.8729	8.1479	0	438	64	1.03173026378327	0.0422838777135148	1.03173026378327	417.484540343385	0	17.1099616545424						850	32	5	NaN	NaN	NaN	3.4085E-05	1	13719	133.76	79.32	1	462670			12087	1835	10171	10433	12087	12087		
LISSSQVDQETGFNR	15	Unmodified	_LISSSQVDQETGFNR_			0	0	0	O43164	O43164	O43164	PJA2	E3 ubiquitin-protein ligase Praja-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.913015	1679.81148	2.6843	0.0022573	-4.8584	-0.0040855	-2.1741	-0.0018282	841.409906751965	8.2277	0.15967	8.2277	8.1656	8.3253	0	375	70	1.07392668217569	0.0461450733802129	1.07392668217569	433.672769256186	0	18.6342904897236						905	19	5	NaN	NaN	NaN	0.00011445	1	23905	110.91	101.64	1	305990			12088	186	10172	10434	12088	12088		
LISSTESELQQSYAK	15	Unmodified	_LISSTESELQQSYAK_			0	0	0	O43149	O43149	O43149	ZZEF1	Zinc finger ZZ-type and EF-hand domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.425424	1682.8363	2.6972	0.0022722	-2.2935	-0.0019321	0.40362	0.00034002	842.423426096267	8.0502	0.071021	8.0502	8.0237	8.0947	0	342	25	1.09598084995137	0.0160294514259214	1.09598084995137	442.572158775342	0	6.47291320999744						96	9	2	NaN	NaN	NaN	0.0018072	1	23984	59.731	47.713	1	23511			12089	183	10173	10435	12089	12089		
LISVETDIVVDHYK	14	Unmodified	_LISVETDIVVDHYK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.93797	1629.86139	2.1548	0.0017582	0.4267	0.00034816	2.5815	0.0021063	816.43998838533	11.367	0.16854	11.367	11.323	11.491	0	291	28	1.12999890578964	0.0179872594676864	1.12999890578964	456.430222813977	0	7.26543079341474						287	20	3	NaN	NaN	NaN	3.9193E-06	1	22488	90.689	66.885	1	55111			12090	1608	10174	10436	12090	12090		
LISVETDIVVDHYK	14	Unmodified	_LISVETDIVVDHYK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.294406	1629.86139	0.070536	3.8392E-05	3.7703	0.0020521	3.8408	0.0020905	544.296390324834	11.367	0.19513	11.367	11.323	11.518	0	705	37	0.851531465363931	0.0244500640244978	0.851531465363931	515.924387683633	0	14.8137618206197						427	23	3	NaN	NaN	NaN	0.0016375	1	22489	81.799	71.711	1	197710			12091	1608	10174	10436	12091	12091		
LISWYDNEFGYSNR	14	Unmodified	_LISWYDNEFGYSNR_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.605643	1762.7951	-0.24163	-0.00014223	-0.34959	-0.00020577	-0.59122	-0.000348	588.605215332772	14.178	0.14187	14.178	14.107	14.249	0	705	46	0.851531465363931	0.0305519708780012	0.851531465363931	515.5967581322	0	18.4990194490517						449	17	4	NaN	NaN	NaN	0.00015901	1	26214	88.24	82.213	1	140370			12092	513	10175	10437	12092	12092		
LISWYDNEFGYSNR	14	Unmodified	_LISWYDNEFGYSNR_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.404826	1762.7951	3.1706	0.0027978	1.4678	0.0012952	4.6384	0.004093	882.40617422368	14.169	0.42561	14.169	14.063	14.489	0	324	145	1.1079963157843	0.0961239851376654	1.1079963157843	447.258357077346	0	38.8018038110238						3444	49	6	NaN	NaN	NaN	8.9555E-33	1	26215	221.56	208.39	1	7645100			12093	513	10175	10437	12093	12093		
LITAADTTAEQR	12	Unmodified	_LITAADTTAEQR_			0	0	0	Q9NPF5	Q9NPF5	Q9NPF5	DMAP1	DNA methyltransferase 1-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.338424	1288.66229	2.0912	0.0013496	-0.060665	-3.9149E-05	2.0306	0.0013104	645.338236004057	4.7425	0.15075	4.7425	4.6982	4.8489	0	525	40	0.973257487423603	0.026255437790293	0.973257487423603	393.995049742673	0	10.6287520536688						201	18	3	NaN	NaN	NaN	0.0034521	1	12023	60.547	42.211	1	40536			12094	2989	10176	10438	12094	12094		
LITLEEEMTK	10	Unmodified	_LITLEEEMTK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.817947	1205.62134	1.329	0.00080246	0.49068	0.00029628	1.8197	0.0010987	603.818473679946	10.498	0.18623	10.498	10.392	10.578	0	579	61	0.936845902828289	0.0405133818697153	0.936845902828289	379.531773427732	0	16.4126412061453						398	22	2	NaN	NaN	NaN	7.1859E-05	1	9625	90.761	63.025	1	353100			12095	554	10177	10439	12095	12095		
LITLEEEMTK	10	Oxidation (M)	_LITLEEEM(Oxidation (M))TK_	LITLEEEM(1)TK	LITLEEEM(120)TK	0	1	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.815404	1221.61626	1.634	0.0009997	-2.4309	-0.0014872	-0.79688	-0.00048754	611.814695213955	7.261	0.14188	7.261	7.1989	7.3408	0	579	61	0.936845902828289	0.0404853363286275	0.936845902828289	379.475544937705	0	16.3988496068686						723	17	5	NaN	NaN	NaN	0.00014814	1	10069	115.86	98.465	1	238910			12096	554	10177	10440	12096	12096	132	
LITNTAEAVLQK	12	Unmodified	_LITNTAEAVLQK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.877185	1299.73982	1.9672	0.0012804	-2.5356	-0.0016504	-0.56846	-0.00036999	650.87634185588	9.8154	0.097525	9.8154	9.7622	9.8598	0	516	31	0.979317271586824	0.0201978857694813	0.979317271586824	396.412352403752	0	8.1757890356501						183	12	3	NaN	NaN	NaN	0.0059777	1	12354	44.57	27.174	1	52542			12097	2080	10178	10441	12097	12097		
LITPAVVSER	10	Unmodified	_LITPAVVSER_			0	0	0	P62851	P62851	P62851	RPS25	40S ribosomal protein S25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.821681	1083.62881	1.3093	0.00071072	-0.16469	-8.9399E-05	1.1446	0.00062132	542.821721902683	8.3608	0.23064	8.3608	8.21	8.4406	0	618	55	0.910492137470517	0.0365277897935211	0.910492137470517	369.324963354572	0	14.8168491211738						917	27	4	NaN	NaN	NaN	0.00014916	1	6310	93.467	50.633	1	641700			12098	1404	10179	10442	12098	12098		
LITQTFSHHNQLAQK	15	Unmodified	_LITQTFSHHNQLAQK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.470835	1764.92712	2.8016	0.0024751	-2.4163	-0.0021347	0.38525	0.00034036	883.969922154545	4.9376	0.035461	4.9376	4.9199	4.9553	0	228	19	1.17191150690002	0.0119577530644956	1.17191150690002	473.054181281006	0	4.82687050394156						49	5	2	NaN	NaN	NaN	3.4108E-06	1	26272	104.49	96.116	1	9420.1			12099	3332	10180	10443	12099	12099		
LITQTFSHHNQLAQK	15	Unmodified	_LITQTFSHHNQLAQK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.316315	1764.92712	1.0957	0.00064573	0.29318	0.00017277	1.3889	0.00081851	589.650757292868	4.9376	0.070925	4.9376	4.911	4.9819	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	524.222295405893	0	9.858515844811						197	9	4	NaN	NaN	NaN	0.00013213	1	26273	51.569	50.687	1	64990			12100	3332	10180	10443	12100	12100		
LITSVADVVNNDPMVGSK	18	Unmodified	_LITSVADVVNNDPMVGSK_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.982583	1857.95061	1.7225	0.0016019	-1.694	-0.0015754	0.028413	2.6424E-05	930.483008609327	13.779	0.14186	13.779	13.7	13.841	0	264	49	1.14797626962532	0.0319312080985819	1.14797626962532	463.211587141986	0	12.8843304291757						452	17	4	NaN	NaN	NaN	0.0001492	1	28655	69.327	66.039	1	92351			12101	545	10181	10444	12101	12101		
LITTQQWLIK	10	Unmodified	_LITTQQWLIK_			0	0	0	P00846	P00846	P00846	MT-ATP6	ATP synthase subunit a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.374081	1242.73361	2.1862	0.0013607	-3.3304	-0.0020728	-1.1442	-0.00071211	622.371584498874	12.875	0.15077	12.875	12.83	12.981	0	549	40	0.957085760909907	0.0262990708755764	0.957085760909907	387.600227901875	0	10.6505877334232						466	18	4	NaN	NaN	NaN	0.0060001	1	10721	79.059	42.848	1	253970			12102	487	10182	10445	12102	12102		
LIVAYVDDLDRR	12	Unmodified	_LIVAYVDDLDRR_			0	0	1	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.268302	1446.78308	-0.97615	-0.00047174	-6.6321	-0.0032051	-7.6082	-0.0036768	483.267322066122	11.225	0.12415	11.225	11.19	11.314	0	750	34	0.820941264895493	0.0224577750816375	0.820941264895493	497.919901572419	0	13.6211610213162						278	15	4	NaN	NaN	NaN	0.039349	1	16901	41.824	32.31	1	60049			12103	119	10183	10446	12103	12103		
LIVDAFLQQLPNCVNR	16	Unmodified	_LIVDAFLQQLPNCVNR_			0	0	0	Q9HAU5	Q9HAU5	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.509103	1899.00365	0.97459	0.00092636	-0.33893	-0.00032216	0.63566	0.0006042	951.011736828201	18.115	0.070909	18.115	18.08	18.151	0	234	31	1.16792504164217	0.0199350677133709	1.16792504164217	471.185458650408	0	8.04256582301235						170	9	3	NaN	NaN	NaN	0.0024165	1	29585	40.861	38.471	1	35623			12104	2945	10184	10447	12104	12104		
LIVDEAINEDNSVVSLSQPK	20	Unmodified	_LIVDEAINEDNSVVSLSQPK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1085.56552	2169.11649	1.447	0.0015708	-0.47815	-0.00051906	0.96888	0.0010518	1086.0671632524	14.01	0.1596	14.01	13.957	14.116	0	150	79	1.22363604450103	0.0516394355790335	1.22363604450103	493.215249780076	0	20.8144874712326						992	19	5	NaN	NaN	NaN	3.8615E-22	1	34297	155.61	146.45	1	334930			12105	1265	10185	10448	12105	12105		
LIVDHNIADYMTAK	14	Unmodified	_LIVDHNIADYMTAK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.276469	1602.80758	-1.0606	-0.00056774	1.1082	0.00059318	0.047536	2.5445E-05	535.277450201231	11.793	0.12414	11.793	11.749	11.873	0	738	40	0.829104889055312	0.0265225632029411	0.829104889055312	502.407989403848	0	16.0717272669914						343	15	4	NaN	NaN	NaN	0.024726	1	21677	35.45	32.571	1	124360			12106	2064	10186	10449	12106	12106		
LIVDHNIADYMTAK	14	Unmodified	_LIVDHNIADYMTAK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.411066	1602.80758	1.7987	0.0014433	-0.76708	-0.00061552	1.0316	0.0008278	802.411864048902	11.793	0.23944	11.793	11.722	11.961	0	363	40	1.08195024817156	0.0260676102408008	1.08195024817156	437.084531063681	0	10.5307514992543						630	28	5	NaN	NaN	NaN	1.3246E-07	1	21678	96.313	80.025	1	308230			12107	2064	10186	10449	12107	12107		
LIVNVNDLR	9	Unmodified	_LIVNVNDLR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.314023	1054.61349	0.7114	0.00037584	-0.22589	-0.00011934	0.48551	0.0002565	528.313944205075	11.119	0.12412	11.119	11.075	11.199	0	639	49	0.896281965493857	0.0324871583843739	0.896281965493857	363.686402592425	0	13.1823892682623						440	15	4	NaN	NaN	NaN	0.006196	1	5588	77.072	41.438	1	184000			12108	835	10187	10450	12108	12108		
LIVPVLLDAAVPAYDK	16	Unmodified	_LIVPVLLDAAVPAYDK_			0	0	0	Q15833	Q15833	Q15833	STXBP2	Syntaxin-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.997831	1695.98111	1.214	0.0010307	-1.9428	-0.0016495	-0.72882	-0.00061877	848.996267980978	18.701	0.088674	18.701	18.656	18.745	0	303	55	1.12200181823275	0.0360215991015307	1.12200181823275	453.051100076352	0	14.5450968387579						444	11	4	NaN	NaN	NaN	2.5446E-06	1	24392	89.382	81.825	1	128300			12109	1872	10188	10451	12109	12109		
LIVVLEGASLETVK	14	Unmodified	_LIVVLEGASLETVK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.942524	1469.8705	0.86598	0.00063731	2.3519	0.0017309	3.2179	0.0023682	735.944255810213	14.817	0.21281	14.817	14.781	14.994	0	330	31	1.10399226369747	0.0200285363602049	1.10399226369747	446.334415980391	0	8.09736206785936						365	25	4	NaN	NaN	NaN	0.00026978	1	17595	83.775	56.828	1	85976			12110	2450	10189	10452	12110	12110		
LIYFQLHR	8	Unmodified	_LIYFQLHR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.313826	1088.6131	0.85876	0.0004683	0.27986	0.00015261	1.1386	0.00062091	545.313909983459	10.037	0.15073	10.037	10.002	10.152	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	373.417289083275	0	7.40235069304316						201	18	3	NaN	NaN	NaN	0.0011973	1	6439	96.666	57.342	1	46732			12111	1648	10190	10453	12111	12111		
LKDDEVAQLK	10	Unmodified	_LKDDEVAQLK_			0	0	1	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.883677	1157.6292	-0.24799	-9.5942E-05	-0.46333	-0.00017926	-0.71132	-0.0002752	386.883527473086	4.4765	0.15072	4.4765	4.4411	4.5918	0	861	58	0.745211914437924	0.0390073973876056	0.745211914437924	453.054270281204	0	23.7146878849086						395	18	4	NaN	NaN	NaN	0.043034	1	8295	30.593	13.197	1	135150			12112	553	10191	10454	12112	12112		
LKDDEVAQLK	10	Unmodified	_LKDDEVAQLK_			0	0	1	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.821878	1157.6292	2.5237	0.0014633	0.2403	0.00013933	2.764	0.0016026	579.821998547259	4.4854	0.3458	4.4854	4.4233	4.7691	0	576	76	0.938871150116794	0.0506452487001521	0.938871150116794	380.530625536821	0	20.5268509591964						1092	40	4	NaN	NaN	NaN	6.8439E-06	1	8298	129.28	83.791	1	1051000			12113	553	10191	10454	12113	12113		
LKPDEGGEVPVLNVSYK	17	Unmodified	_LKPDEGGEVPVLNVSYK_			0	0	1	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.33152	1842.97273	0.17688	0.00010884	-0.74055	-0.00045568	-0.56367	-0.00034684	615.66540595296	10.525	0.18625	10.525	10.427	10.613	0	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	514.188679261367	0	13.5651126142445						489	22	4	NaN	NaN	NaN	0.010545	1	28310	25.922	21.105	1	149550			12114	1335	10192	10455	12114	12114		
LKPEDITQIQPQQLVLR	17	Unmodified	_LKPEDITQIQPQQLVLR_			0	0	1	P05556	P05556	P05556	ITGB1	Integrin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.724751	2018.15242	0.056161	3.7837E-05	-0.86895	-0.00058543	-0.81279	-0.00054759	674.058488978682	14.152	0.19507	14.152	14.036	14.232	0	648	52	0.890187667287968	0.0345535384849188	0.890187667287968	538.470847235498	0	20.901292869675						660	23	4	NaN	NaN	NaN	0.001668	1	31960	71.219	70.652	1	148160			12115	535	10193	10456	12115	12115		
LKPEGLHQLLAGFEDK	16	Unmodified	_LKPEGLHQLLAGFEDK_			0	0	1	Q9BY32	Q9BY32	Q9BY32	ITPA	Inosine triphosphate pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.996471	1793.96758	-1.1376	-0.0006814	0.29595	0.00017728	-0.84161	-0.00050412	599.331045071215	13.221	0.12415	13.221	13.167	13.292	0	726	34	0.837263974740672	0.022429693259391	0.837263974740672	506.889210605424	0	13.5791934842246						331	15	4	NaN	NaN	NaN	0.02326	1	27084	34.338	28.95	1	120130			12116	2793	10194	10457	12116	12116		
LKPEYDIMCK	10	Unmodified	_LKPEYDIMCK_			0	0	1	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	432.882403	1295.62538	-1.1663	-0.00050487	-1.2316	-0.00053315	-2.3979	-0.001038	432.882077349511	6.8796	0.088677	6.8796	6.8441	6.9328	0	906	22	0.714399420407021	0.0143952206507976	0.714399420407021	433.777534809456	0	8.74066124435473						148	11	3	NaN	NaN	NaN	0.0008558	1	12226	76.572	69.422	1	41273			12117	3044	10195	10458	12117	12117		
LKPGEIDPNPETK	13	Unmodified	_LKPGEIDPNPETK_			0	0	1	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.924313	1436.75111	-0.03861	-1.853E-05	-1.8655	-0.00089532	-1.9042	-0.00091385	479.923377871373	4.8667	0.097546	4.8667	4.8046	4.9021	0	894	58	0.722622390967862	0.0390128377233365	0.722622390967862	438.316149879528	0	23.6637516917576						317	12	2	NaN	NaN	NaN	0.0072596	1	16591	71.896	63.895	1	81154			12118	2640	10196	10459	12118	12118		
LKPGEIDPNPETK	13	Unmodified	_LKPGEIDPNPETK_			0	0	1	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.382831	1436.75111	2.318	0.0016675	-1.6975	-0.0012211	0.62048	0.00044636	719.381606666358	4.8578	0.10641	4.8578	4.8046	4.911	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.175333530641	0	8.1551709321717						212	13	3	NaN	NaN	NaN	0.06488	1	16593	55.578	39.996	1	51181			12119	2640	10196	10459	12119	12119		
LKPGYLEATVDWFR	14	Unmodified	_LKPGYLEATVDWFR_			0	0	1	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.634874	1693.88279	-1.1403	-0.00064498	-0.97266	-0.00055017	-2.1129	-0.0011952	565.968645240517	15.34	0.079814	15.34	15.313	15.393	0	723	37	0.839303037468863	0.0244704573832687	0.839303037468863	508.353648696152	0	14.8214003056194						190	10	3	NaN	NaN	NaN	0.002583	1	24317	52.837	49.959	1	38832			12120	1822	10197	10460	12120	12120		
LKPQYLEELPGQLK	14	Unmodified	_LKPQYLEELPGQLK_			0	0	1	P21266	P21266	P21266	GSTM3	Glutathione S-transferase Mu 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.650412	1654.92941	-1.6455	-0.00090937	-0.46714	-0.00025816	-2.1126	-0.0011675	552.650037049552	11.27	0.062084	11.27	11.243	11.305	0	807	34	0.782101955086014	0.0225140971696576	0.782101955086014	473.798149744742	0	13.6390626730807						170	8	3	NaN	NaN	NaN	0.0025189	1	23198	64.266	60.283	1	40396			12121	788	10198	10461	12121	12121		
LKPTDVGLLAVIANNIITINK	21	Unmodified	_LKPTDVGLLAVIANNIITINK_			0	0	1	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.782378	2219.3253	-0.35506	-0.00026302	-2.2719	-0.001683	-2.627	-0.001946	741.115202004699	20.066	0.035463	20.066	20.066	20.102	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	560.21940622699	0	12.2523885134852						81	5	5	NaN	NaN	NaN	5.8663E-06	1	34887	76.049	71.677	1	25409			12122	383	10199	10462	12122	12122		
LLAAEPLSK	9	Unmodified	_LLAAEPLSK_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.286943	940.559333	-0.32139	-0.00015147	0.27566	0.00012992	-0.045727	-2.155E-05	471.287144590093	6.9328	0.097473	6.9328	6.8974	6.9949	0	744	58	0.82502364452135	0.038747593622521	0.82502364452135	335.294450155616	0	15.7472494088989						283	12	3	NaN	NaN	NaN	0.0029762	1	3076	48.157	39.394	1	76402			12123	2289	10200	10463	12123	12123		
LLADPTGAFGK	11	Unmodified	_LLADPTGAFGK_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.300581	1088.58661	0.70679	0.00038541	-0.66761	-0.00036405	0.039185	2.1368E-05	545.300107142113	10.117	0.33695	10.117	10.01	10.347	0	699	70	0.85560534332665	0.0468203550089841	0.85560534332665	347.041268543576	0	18.9907596098019						1397	39	5	NaN	NaN	NaN	2.3248E-07	1	6438	95.311	60.38	1	1469500			12124	895	10201	10464	12124	12124		
LLADQAEAR	9	Unmodified	_LLADQAEAR_			0	0	0	P84098	P84098	P84098	RPL19	60S ribosomal protein L19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.766906	985.519259	1.7893	0.00088349	0.23487	0.00011597	2.0242	0.00099946	493.767124563556	3.8914	0.34583	3.8914	3.8292	4.1751	0	723	70	0.839303037468863	0.0468724117223618	0.839303037468863	340.873499756123	0	19.0367034462259						1077	40	4	NaN	NaN	NaN	2.5081E-05	1	3962	138.55	69.456	1	904170			12125	1485	10202	10465	12125	12125		
LLAEGHPDPDAELQR	15	Unmodified	_LLAEGHPDPDAELQR_			0	0	0	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.918101	1659.82165	3.3233	0.0027614	-3.0553	-0.0025387	0.26804	0.00022272	830.915838930103	6.7909	0.088676	6.7909	6.7377	6.8264	0	333	55	1.10198982404297	0.0360662768322055	1.10198982404297	445.049060355292	0	14.5657085614441						350	11	3	NaN	NaN	NaN	0.041309	1	23337	25.588	17.213	1	83360			12126	1147	10203	10466	12126	12126		
LLAEGHPDPDAELQR	15	Unmodified	_LLAEGHPDPDAELQR_			0	0	0	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.281159	1659.82165	0.2701	0.00014971	1.7971	0.0009961	2.0672	0.0011458	554.283080374113	6.7821	0.15958	6.7821	6.7111	6.8707	0	666	106	0.877991458330206	0.07130782635454	0.877991458330206	531.875096337136	0	43.1972961149796						672	19	3	NaN	NaN	NaN	0.00013213	1	23339	72.846	66.099	1	172290			12127	1147	10203	10466	12127	12127		
LLAEMDSQFDSTTGFLGK	18	Unmodified	_LLAEMDSQFDSTTGFLGK_			0	0	0	O15155	O15155	O15155	BET1	BET1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.472048	1958.92954	1.6013	0.00157	6.7585	0.0066266	8.3598	0.0081966	980.482080390605	15.757	0.20393	15.757	15.659	15.863	0	231	76	1.16991841121525	0.0498068956194959	1.16991841121525	471.884892913125	0	20.0895390485626						860	24	4	NaN	NaN	NaN	2.8376E-10	1	30880	132.93	122.45	1	221000			12128	150	10204	10467	12128	12128		
LLAEMSSFCGDMEK	14	Unmodified	_LLAEMSSFCGDMEK_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.351502	1616.68845	1.9294	0.0015616	0.1211	9.8014E-05	2.0505	0.0016596	809.351981660743	12.467	0.12414	12.467	12.431	12.556	0	390	31	1.06389100039157	0.0200810554330217	1.06389100039157	429.757365222333	0	8.11171583423749						319	15	4	NaN	NaN	NaN	1.0375E-06	1	22090	112.73	107.9	1	92578			12129	2816	10205	10468	12129	12129		
LLAENNEIISNIR	13	Unmodified	_LLAENNEIISNIR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.91483	1497.81511	1.5531	0.0011647	0.22882	0.0001716	1.7819	0.0013363	749.91503911614	11.465	0.19524	11.465	11.42	11.616	0	426	46	1.03977710643793	0.030165256192159	1.03977710643793	420.299649913763	0	12.1934273592128						558	23	5	NaN	NaN	NaN	5.0682E-17	1	18477	192.95	149.67	1	275650			12130	1901	10206	10469	12130	12130		
LLAESVTEVEIFGK	14	Unmodified	_LLAESVTEVEIFGK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.921789	1533.82903	1.6494	0.0012666	-4.9021	-0.0037644	-3.2527	-0.0024978	767.916578503226	15.402	0.20408	15.402	15.367	15.571	0	399	43	1.0578662689527	0.0281289969730538	1.0578662689527	427.519753227279	0	11.3678847670949						426	24	4	NaN	NaN	NaN	0.0033827	1	19549	46.068	35.281	1	98957			12131	1737	10207	10470	12131	12131		
LLAETVAPAVR	11	Unmodified	_LLAETVAPAVR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.342781	1138.67101	0.70551	0.00040238	0.25313	0.00014437	0.95864	0.00054675	570.343188109329	8.5116	0.079813	8.5116	8.4761	8.5559	0	633	40	0.900343422309015	0.0263903231913262	0.900343422309015	364.986604669451	0	10.6982671490276						212	10	3	NaN	NaN	NaN	2.5859E-05	1	7768	83.623	67.166	1	66028			12132	2726	10208	10471	12132	12132		
LLAGEDGTSER	11	Unmodified	_LLAGEDGTSER_			0	0	0	Q9UPQ0	Q9UPQ0	Q9UPQ0	LIMCH1	LIM and calponin homology domains-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.283117	1146.55168	1.7224	0.00098915	2.288	0.001314	4.0104	0.0023031	574.282497101734	3.7406	0.11528	3.7406	3.6874	3.8026	0	651	28	0.888155670855968	0.018290507163651	0.888155670855968	360.016243854548	0	7.41410532334498						174	14	3	NaN	NaN	NaN	0.012464	1	7968	41.796	32.281	1	42263			12133	3314	10209	10472	12133	12133		
LLAHVTLELQHYHQLLEK	18	Unmodified	_LLAHVTLELQHYHQLLEK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	547.058657	2184.20552	-1.0333	-0.00056526	-0.40963	-0.00022409	-1.4429	-0.00078935	547.309104637563	12.352	0.17732	12.352	12.307	12.485	0	732	25	0.833184998970724	0.0163204408443606	0.833184998970724	671.63613069232	0	13.156019075524						323	21	5	NaN	NaN	NaN	0.00076639	1	34513	37.886	35.645	1	104820			12134	1284	10210	10473	12134	12134		
LLAHVTLELQHYHQLLEK	18	Unmodified	_LLAHVTLELQHYHQLLEK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.075784	2184.20552	0.88062	0.00064204	0.46568	0.00033952	1.3463	0.00098155	729.410411064614	12.352	0.070948	12.352	12.316	12.387	0	474	22	1.00756305028564	0.014108255116009	1.00756305028564	609.154373170251	0	8.52959554172025						178	9	4	NaN	NaN	NaN	5.6152E-05	1	34514	57.62	53.548	1	46196			12135	1284	10210	10473	12135	12135		
LLALGQGAWDMIDSQVFK	18	Unmodified	_LLALGQGAWDMIDSQVFK_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.516593	1991.01863	1.5158	0.0015105	0.039156	3.902E-05	1.5549	0.0015495	997.019287408335	19.836	0.044309	19.836	19.827	19.871	0	186	52	1.1997861197946	0.0338268396719554	1.1997861197946	483.877139276515	0	13.6424602195208						164	6	4	NaN	NaN	NaN	0.00017624	1	31480	63.908	60.404	1	29327			12136	2394	10211	10474	12136	12136		
LLALNPDAVELFK	13	Unmodified	_LLALNPDAVELFK_			0	0	0	Q9BSL1	Q9BSL1	Q9BSL1	UBAC1	Ubiquitin-associated domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.91631	1441.81807	0.98738	0.00071281	-0.67847	-0.0004898	0.30891	0.00022301	721.915614064772	17.619	0.10638	17.619	17.583	17.69	0	432	58	1.035754240522	0.0382409924539848	1.035754240522	418.822361468244	0	15.4633040714324						315	13	4	NaN	NaN	NaN	0.00043862	1	16732	72.922	62.672	1	89716			12137	2727	10212	10475	12137	12137		
LLALNSLYSPK	11	Unmodified	_LLALNSLYSPK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.858264	1217.70197	0.70925	0.00043254	-0.18725	-0.00011419	0.522	0.00031835	609.858007006712	13.141	0.18622	13.141	13.052	13.238	0	510	55	0.983355730988811	0.0363562041234198	0.983355730988811	398.328948563367	0	14.7268461512651						546	22	4	NaN	NaN	NaN	1.6578E-07	1	9967	114.39	78.183	1	199380			12138	1465	10213	10476	12138	12138		
LLALYNQGHIK	11	Unmodified	_LLALYNQGHIK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.915312	1268.72411	-1.4296	-0.00060602	-0.88892	-0.00037683	-2.3185	-0.00098285	423.914863217874	7.5092	0.10639	7.5092	7.4649	7.5713	0	828	37	0.767766820543916	0.0245899287462689	0.767766820543916	466.285886898005	0	14.9341394123932						256	13	3	NaN	NaN	NaN	0.02573	1	11482	24.121	22.151	1	100250			12139	2647	10214	10477	12139	12139		
LLALYNQGHIK	11	Unmodified	_LLALYNQGHIK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.36933	1268.72411	1.7183	0.0010917	0.64329	0.00040872	2.3616	0.0015005	635.369720661956	7.5092	0.14186	7.5092	7.4738	7.6156	0	465	46	1.01360860968299	0.0302278047766038	1.01360860968299	410.398405986311	0	12.2388886383507						372	17	4	NaN	NaN	NaN	4.346E-06	1	11483	105.81	88.338	1	159120			12140	2647	10214	10477	12140	12140		
LLANMVYQYK	10	Unmodified	_LLANMVYQYK_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.831191	1241.64783	1.8022	0.0011207	0.50007	0.00031096	2.3023	0.0014317	621.830991674517	10.888	0.23944	10.888	10.844	11.083	0	522	34	0.975277694896658	0.0222253598495629	0.975277694896658	394.971368548529	0	9.00090388840022						413	28	5	NaN	NaN	NaN	5.7316E-05	1	10672	105.04	78.584	1	129350			12141	875	10215	10478	12141	12141		
LLAPDCEIIQEVGK	14	Unmodified	_LLAPDCEIIQEVGK_			0	0	0	Q9NQT5	Q9NQT5	Q9NQT5	EXOSC3	Exosome complex component RRP40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.918723	1583.82289	1.5725	0.0012469	2.1479	0.0017031	3.7205	0.00295	792.920698123914	13.371	0.15079	13.371	13.3	13.451	0	378	67	1.07192009927972	0.0441600684452672	1.07192009927972	433.077023480071	0	17.8415452903657						572	18	4	NaN	NaN	NaN	0.0036445	1	21088	51.454	35.838	1	140970			12142	3003	10216	10479	12142	12142		
LLAPEAGSHPQQTQK	15	Unmodified	_LLAPEAGSHPQQTQK_			0	0	0	Q8NFQ8	Q8NFQ8	Q8NFQ8	TOR1AIP2	Torsin-1A-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.617883	1603.83182	1.501	0.00080394	0.76942	0.00041212	2.2704	0.0012161	535.618342864819	3.3592	0.070921	3.3592	3.3415	3.4124	0	639	28	0.896281965493857	0.0182778248645526	0.896281965493857	543.111935298437	0	11.0756494244122						122	9	3	NaN	NaN	NaN	0.0023986	1	21719	60	47.404	1	22338			12143	2320	10217	10480	12143	12143		
LLAPLGLHLLPYSPR	15	Unmodified	_LLAPLGLHLLPYSPR_			0	0	0	Q13286	Q13286	Q13286	CLN3	Battenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.003009	1658.9872	-0.98534	-0.00054588	-1.5023	-0.00083228	-2.4876	-0.0013782	554.336576410255	16.537	0.10641	16.537	16.493	16.599	0	684	37	0.86578508874114	0.0244161317005186	0.86578508874114	524.48284195237	0	14.7910172054258						227	13	3	NaN	NaN	NaN	0.015817	1	23316	39.702	37.86	1	46691			12144	1650	10218	10481	12144	12144		
LLAQDQGQGAPLLEPAP	17	Unmodified	_LLAQDQGQGAPLLEPAP_			0	0	0	Q15102	Q15102	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.459601	1716.90465	2.3992	0.002062	-2.3399	-0.0020111	0.059299	5.0965E-05	859.458047735664	13.974	0.11528	13.974	13.921	14.036	0	339	58	1.09798411722691	0.0380463696733653	1.09798411722691	443.309240105561	0	15.3611577472292						343	14	3	NaN	NaN	NaN	0.017638	1	24976	40.224	23.937	1	67766			12145	1812	10219	10482	12145	12145		
LLAQLLGTSEEDSMVGTLYDK	21	Unmodified	_LLAQLLGTSEEDSMVGTLYDK_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1142.07487	2282.13518	0.19587	0.0002237	0.18338	0.00020944	0.37926	0.00043314	1142.57636195481	17.858	0.09752	17.858	17.832	17.929	0	66	58	1.27913350869533	0.0376151518538832	1.27913350869533	515.422295576047	0	15.1568915872939						424	12	5	NaN	NaN	NaN	8.3082E-06	1	35487	69.369	69.064	1	85447			12146	2949	10220	10483	12146	12146		
LLAQLLGTSEEDSMVGTLYDK	21	Oxidation (M)	_LLAQLLGTSEEDSM(Oxidation (M))VGTLYDK_	LLAQLLGTSEEDSM(1)VGTLYDK	LLAQLLGTSEEDSM(62)VGTLYDK	0	1	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1150.07232	2298.13009	-0.15506	-0.00017833	1.0278	0.001182	0.87273	0.0010037	1150.57431571444	15.837	0.070925	15.837	15.81	15.881	0	63	34	1.28111162701928	0.0217622834966473	1.28111162701928	516.197622286871	0	8.76866524319894						155	9	3	NaN	NaN	NaN	4.0328E-05	1	35626	62.304	59.399	1	27386			12147	2949	10220	10484	12147	12147	627	
LLASANLEEVTMK	13	Unmodified	_LLASANLEEVTMK_			0	0	0	P35659	P35659	P35659	DEK	Protein DEK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.88161	1417.74867	1.2791	0.00090802	-0.45103	-0.00032018	0.82809	0.00058785	709.881579191508	11.633	0.23059	11.633	11.545	11.775	0	453	52	1.02166545906632	0.0342250726954365	1.02166545906632	413.192001272371	0	13.8416407790114						596	27	4	NaN	NaN	NaN	2.7714E-07	1	16030	124.46	95.146	1	215980			12148	979	10221	10485	12148	12148		
LLASCSADMTIK	12	Unmodified	_LLASCSADMTIK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.328156	1308.64176	1.4791	0.00096927	-3.2004	-0.0020973	-1.7213	-0.001128	655.325908618834	8.281	0.20406	8.281	8.2011	8.4051	0	519	55	0.97729762293174	0.0363763278490683	0.97729762293174	395.566530494369	0	14.7235166255865						316	24	2	NaN	NaN	NaN	0.047498	1	12616	35.33	21.531	1	89383			12149	1060	10222	10486	12149	12149		
LLASSDPLAQIAEDK	15	Unmodified	_LLASSDPLAQIAEDK_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.919778	1569.825	2.7274	0.0021435	0.65108	0.0005117	3.3785	0.0026552	785.920038045607	13.558	0.16845	13.558	13.496	13.664	0	351	40	1.08996939197032	0.026056835587305	1.08996939197032	440.403337243526	0	10.5282932118955						545	20	4	NaN	NaN	NaN	1.5599E-08	1	20666	93.772	82.416	1	198170			12150	956	10223	10487	12150	12150		
LLASTLVHSVK	11	Unmodified	_LLASTLVHSVK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.358431	1166.70231	1.5578	0.00091029	0.94947	0.00055483	2.5072	0.0014651	584.358874887628	8.0591	0.11538	8.0591	8.0148	8.1302	0	495	31	0.993446994398923	0.0201755538999089	0.993446994398923	402.613702140961	0	8.17653533020302						251	14	4	NaN	NaN	NaN	5.2252E-05	1	8524	87.895	64.32	1	98910			12151	3113	10224	10488	12151	12151		
LLASTTPEEILEK	13	Unmodified	_LLASTTPEEILEK_			0	0	0	Q8WUR7	Q8WUR7	Q8WUR7	C15orf40	UPF0235 protein C15orf40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.400689	1442.78683	1.2649	0.00091376	0.67119	0.00048487	1.9361	0.0013986	722.401297535032	12.086	0.1685	12.086	11.988	12.157	0	417	40	1.04580932352505	0.0261396123563653	1.04580932352505	422.885577362215	0	10.5698666235702						345	20	3	NaN	NaN	NaN	0.0029134	1	16758	50.09	32.62	1	87691			12152	2371	10225	10489	12152	12152		
LLATEQEDAAVAK	13	Unmodified	_LLATEQEDAAVAK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.861731	1357.70891	1.934	0.0013149	-1.9508	-0.0013263	-0.016791	-1.1416E-05	679.860232595717	5.9041	0.23948	5.9041	5.8509	6.0904	0	453	52	1.02166545906632	0.0342250726954365	1.02166545906632	413.368482030404	0	13.8475527600022						530	28	4	NaN	NaN	NaN	3.8269E-08	1	14131	120.65	105.89	1	165170			12153	3158	10226	10490	12153	12153		
LLAVAATAPPDAPNREEVFDER	22	Unmodified	_LLAVAATAPPDAPNREEVFDER_			0	0	1	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	794.408039	2380.20229	1.308	0.0010391	0.1151	9.1439E-05	1.4231	0.0011305	794.742416350861	11.154	0.1596	11.154	11.11	11.27	0	549	61	0.957085760909907	0.0404573198994148	0.957085760909907	578.335753182351	0	24.4470407265519						821	19	5	NaN	NaN	NaN	3.6872E-08	1	36258	87.727	84.286	1	257070			12154	753	10227	10491	12154	12154		
LLCETLLEPGCQLESLWVK	19	Unmodified	_LLCETLLEPGCQLESLWVK_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.393685	2287.15923	0.063554	4.8517E-05	-0.90386	-0.00069	-0.84031	-0.00064148	763.728043078523	19.57	0.044348	19.57	19.543	19.587	0	579	25	0.936845902828289	0.0162053462177963	0.936845902828289	566.239054139958	0	9.79467368824828						115	6	4	NaN	NaN	NaN	0.0015844	1	35542	41.87	36.788	1	20975			12155	678	10228	10492	12155	12155		
LLCETLLEPGCQLESLWVK	19	Unmodified	_LLCETLLEPGCQLESLWVK_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.58689	2287.15923	-0.33122	-0.00037911	-0.046568	-5.3301E-05	-0.37779	-0.00043241	1145.08809865107	19.561	0.053208	19.561	19.543	19.596	0	66	25	1.27913350869533	0.0158260309307916	1.27913350869533	515.415443646932	0	6.37695807194018						105	7	4	NaN	NaN	NaN	0.031803	1	35543	30.875	26.568	1	15586			12156	678	10228	10492	12156	12156		
LLCGLLAER	9	Unmodified	_LLCGLLAER_			0	0	0	P14174	P14174	P14174	MIF	Macrophage migration inhibitory factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.797152	1043.57975	0.49817	0.00026044	-0.26513	-0.00013861	0.23304	0.00012183	522.79732588763	11.811	0.36357	11.811	11.74	12.103	0	651	64	0.888155670855968	0.0426601096058868	0.888155670855968	360.438085330692	0	17.3126499451659						1385	42	5	NaN	NaN	NaN	6.2298E-06	1	5324	142.36	49.686	1	1759500			12157	692	10229	10493	12157	12157		
LLCNFMR	7	Unmodified	_LLCNFMR_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.238415	952.462278	-0.32594	-0.00015555	-0.91094	-0.00043474	-1.2369	-0.00059029	477.238295672036	9.6824	0.16848	9.6824	9.6381	9.8066	0	729	31	0.835224628594324	0.0203948812138425	0.835224628594324	339.379102532589	0	8.28710773802442						268	20	4	NaN	NaN	NaN	0.030532	1	3285	49.406	43.659	1	76479			12158	841	10230	10494	12158	12158		
LLDAQLATGGIVDPR	15	Unmodified	_LLDAQLATGGIVDPR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.93048	1537.84641	2.7852	0.0021444	1.014	0.00078074	3.7993	0.0029252	769.931069759841	12.937	0.39912	12.937	12.804	13.203	0	363	76	1.08195024817156	0.0501576941762703	1.08195024817156	437.242668182894	0	20.2699560988101						1098	46	3	NaN	NaN	NaN	0.022503	1	19673	51.829	45.082	1	411560			12159	1816	10231	10495	12159	12159		
LLDAQLATGGLVCPAR	16	Unmodified	_LLDAQLATGGLVCPAR_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.950889	1653.88723	1.9297	0.0015977	0.038726	3.2063E-05	1.9684	0.0016298	827.95106988764	13.132	0.10642	13.132	13.079	13.185	0	303	31	1.12200181823275	0.0199982246978856	1.12200181823275	453.14454284495	0	8.0767127478523						231	13	3	NaN	NaN	NaN	2.2623E-06	1	23165	100.07	86.294	1	53686			12160	1298	10232	10496	12160	12160		
LLDAQLSTGGIVDPSK	16	Unmodified	_LLDAQLSTGGIVDPSK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.440877	1612.8672	1.8433	0.0014884	0.28829	0.00023278	2.1316	0.0017211	807.441178541142	12.157	0.1685	12.157	12.086	12.254	0	384	58	1.06790610341098	0.0381198356201773	1.06790610341098	431.387942505648	0	15.398767180295						663	20	4	NaN	NaN	NaN	1.0108E-06	1	21985	107.6	101.74	1	220770			12161	1816	10233	10497	12161	12161		
LLDAVDTYIPVPAR	14	Unmodified	_LLDAVDTYIPVPAR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.929948	1541.84534	2.0261	0.001564	0.82108	0.00063382	2.8472	0.0021978	771.930910118982	15.101	0.26598	15.101	15.003	15.269	0	393	79	1.0618830335572	0.0521963809421835	1.0618830335572	429.123084444952	0	21.0933514134229						1450	31	5	NaN	NaN	NaN	6.0858E-24	1	19793	168.69	140.59	1	1306800			12162	1131	10234	10498	12162	12162		
LLDCLLESHR	10	Unmodified	_LLDCLLESHR_			0	0	0	Q9Y6D6	Q9Y6D6	Q9Y6D6	ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.220295	1254.63906	-2.1279	-0.00089205	-0.44657	-0.00018721	-2.5744	-0.0010793	419.220150176134	10.197	0.062056	10.197	10.17	10.232	0	849	16	0.753417699604308	0.010253657827494	0.753417699604308	457.626489799457	0	6.22807964514936						57	8	2	NaN	NaN	NaN	0.040396	1	11059	26.947	14.88	1	10937			12163	3460	10235	10499	12163	12163		
LLDDLFR	7	Unmodified	_LLDDLFR_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.25036	890.486168	-1.5209	-0.00067871	-1.6173	-0.00072172	-3.1382	-0.0014004	446.249644224191	14.471	0.17733	14.471	14.409	14.586	0	777	46	0.802556497112065	0.0306540760963989	0.802556497112065	326.42765077321	0	12.4680792975668						412	21	3	NaN	NaN	NaN	0.011221	1	2172	72.355	39.383	1	147840			12164	3269	10236	10500	12164	12164		
LLDDNGNIAEELSILK	16	Unmodified	_LLDDNGNIAEELSILK_			0	0	0	O60613	O60613	O60613	SEP15	15 kDa selenoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.969999	1755.92544	1.6473	0.0014479	0.6826	0.00059999	2.3299	0.0020479	879.472217205038	17.495	0.18621	17.495	17.45	17.637	0	300	34	1.12400150285141	0.0219904803552342	1.12400150285141	453.732931504191	0	8.877038946526						223	22	4	NaN	NaN	NaN	0.00010118	1	26052	98.865	81.874	1	49710			12165	271	10237	10501	12165	12165		
LLDDVSFHPCIR	12	Unmodified	_LLDDVSFHPCIR_			0	0	0	Q9Y2T2	Q9Y2T2	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.250254	1470.72893	-0.37562	-0.00018452	-0.22378	-0.00010993	-0.5994	-0.00029446	491.25013272093	11.323	0.16854	11.323	11.199	11.367	0	717	46	0.84338031290707	0.030585949193784	0.84338031290707	511.450891398879	0	18.5482287646965						237	20	3	NaN	NaN	NaN	0.033828	1	17607	15.148	12.477	1	50518			12166	3352	10238	10502	12166	12166		
LLDEDEIR	8	Unmodified	_LLDEDEIR_			0	0	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.758746	1001.50294	0.090189	4.5253E-05	0.9982	0.00050086	1.0884	0.00054611	501.759084526267	7.1014	0.17744	7.1014	7.0214	7.1989	0	672	40	0.873923798053065	0.0264453027366778	0.873923798053065	354.856349059006	0	10.7381027954657						325	21	3	NaN	NaN	NaN	0.044662	1	4317	47.349	27.862	1	105040			12167	224	10239	10503	12167	12167		
LLDEEEATDNDLR	13	Unmodified	_LLDEEEATDNDLR_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.857374	1531.7002	2.4466	0.0018762	-0.56866	-0.00043608	1.8779	0.0014401	766.857660324296	7.8995	0.24841	7.8995	7.8374	8.0858	0	444	49	1.02770517576159	0.0322051603576423	1.02770517576159	415.335776406476	0	13.0153623791221						859	29	5	NaN	NaN	NaN	7.5638E-24	1	19477	223.96	206.23	1	573760			12168	2370	10240	10504	12168	12168		
LLDELAGK	8	Unmodified	_LLDELAGK_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.750193	857.485833	-1.8163	-0.00078056	2.7964	0.0012018	0.98013	0.00042121	429.751290737627	6.5249	0.079799	6.5249	6.4895	6.5693	0	807	19	0.782101955086014	0.0122812703870125	0.782101955086014	318.293846339773	0	4.99813708941701						67	10	2	NaN	NaN	NaN	0.069478	1	1675	26.223	0	1	11945			12169	570	10241	10505	12169	12169		
LLDELSPNTAPHK	13	Unmodified	_LLDELSPNTAPHK_			0	0	0	P22830	P22830	P22830	FECH	Ferrochelatase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.924424	1433.75144	-1.2726	-0.0006095	-0.35226	-0.00016871	-1.6249	-0.0007782	478.924288611783	7.1545	0.11525	7.1545	7.1014	7.2166	0	834	43	0.763668499782291	0.0286762649224902	0.763668499782291	463.222430870268	0	17.3943133040876						174	14	2	NaN	NaN	NaN	0.069675	1	16502	20.336	17.233	1	41770			12170	812	10242	10506	12170	12170		
LLDEQEQEDEEASTGSHLK	19	Unmodified	_LLDEQEQEDEEASTGSHLK_			0	0	0	Q9HAU5	Q9HAU5	Q9HAU5	UPF2	Regulator of nonsense transcripts 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.997593	2156.97095	2.1665	0.0015599	-0.16817	-0.00012108	1.9984	0.0014388	720.331316527061	6.0017	0.070943	6.0017	5.9751	6.0461	0	504	25	0.987393073566096	0.0161471385123466	0.987393073566096	597.007562416039	0	9.76304580346527						154	9	4	NaN	NaN	NaN	0.01454	1	34128	59.997	59.43	1	37026			12171	2945	10243	10507	12171	12171		
LLDEVFFSEK	10	Unmodified	_LLDEVFFSEK_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.818804	1225.62306	1.3116	0.00080509	-1.7169	-0.0010539	-0.40531	-0.00024879	613.817889882577	14.48	0.18621	14.48	14.409	14.595	0	579	61	0.936845902828289	0.0405021601572745	0.936845902828289	379.461681534791	0	16.4050648593035						756	22	5	NaN	NaN	NaN	4.4525E-06	1	10165	105.36	85.871	1	615360			12172	844	10244	10508	12172	12172		
LLDEWFTLDEVPK	13	Unmodified	_LLDEWFTLDEVPK_			0	0	0	A0FGR8	A0FGR8	A0FGR8	ESYT2	Extended synaptotagmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.913964	1603.81338	0.95119	0.00076372	2.2903	0.0018389	3.2415	0.0026027	802.915594344193	18.275	0.15074	18.275	18.231	18.381	0	387	85	1.06589869032374	0.0562425139054787	1.06589869032374	430.597723549593	0	22.7206381565681						557	18	3	NaN	NaN	NaN	0.0073384	1	21716	28.328	16.972	1	116880			12173	4	10245	10509	12173	12173		
LLDFGSLSNLQVTQPTVGMNFK	22	Unmodified	_LLDFGSLSNLQVTQPTVGMNFK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1205.12777	2408.24098	0.42651	0.00051399	-0.41111	-0.00049544	0.015398	1.8557E-05	1205.62890678244	18.807	0.088684	18.807	18.781	18.869	0	66	70	1.27913350869533	0.0455341401577483	1.27913350869533	515.258908905835	0	18.3420035642542						605	11	5	NaN	NaN	NaN	1.5858E-16	1	36394	150.93	141.41	1	197760			12174	589	10246	10510	12174	12174		
LLDFGSLSNLQVTQPTVGMNFK	22	Unmodified	_LLDFGSLSNLQVTQPTVGMNFK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.75427	2408.24098	0.88076	0.00070792	-0.52914	-0.0004253	0.35163	0.00028262	804.088380060956	18.807	0.070955	18.807	18.781	18.851	0	432	184	1.035754240522	0.123028886935054	1.035754240522	625.830277978615	0	74.3373278116251						1074	9	5	NaN	NaN	NaN	6.0389E-09	1	36395	164.3	148.75	1	278000			12175	589	10246	10510	12175	12175		
LLDFGSLSNLQVTQPTVGMNFK	22	Oxidation (M)	_LLDFGSLSNLQVTQPTVGM(Oxidation (M))NFK_	LLDFGSLSNLQVTQPTVGM(1)NFK	LLDFGSLSNLQVTQPTVGM(120)NFK	0	1	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1213.12522	2424.2359	0.72438	0.00087877	-0.71194	-0.00086367	0.012443	1.5095E-05	1213.62553629214	17.708	0.07981	17.708	17.672	17.752	0	63	70	1.28111162701928	0.0455341401577483	1.28111162701928	516.036189218573	0	18.3413089622948						393	10	4	NaN	NaN	NaN	8.9294E-16	1	36463	120.37	107.99	1	86256			12176	589	10246	10511	12176	12176	158	
LLDFGSLSNLQVTQPTVGMNFK	22	Oxidation (M)	_LLDFGSLSNLQVTQPTVGM(Oxidation (M))NFK_	LLDFGSLSNLQVTQPTVGM(1)NFK	LLDFGSLSNLQVTQPTVGM(90)NFK	0	1	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.085909	2424.2359	1.7369	0.0014053	-1.1022	-0.00089178	0.63465	0.00051349	809.419430622054	17.708	0.088688	17.708	17.663	17.752	0	402	82	1.05585747106793	0.0542974937279912	1.05585747106793	637.953046036681	0	32.8067494572863						549	11	4	NaN	NaN	NaN	0.00017084	1	36464	90.376	80.503	1	133970			12177	589	10246	10511	12177	12177	158	
LLDFLIK	7	Unmodified	_LLDFLIK_			0	0	0	Q13255	Q13255	Q13255	GRM1	Metabotropic glutamate receptor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.275847	860.537141	-1.5594	-0.00067252	-1.3867	-0.00059804	-2.9461	-0.0012706	431.275139094447	15.5	0.1154	15.5	15.455	15.571	0	759	34	0.814815566123307	0.0224671474092853	0.814815566123307	331.588888454571	0	9.14299719583727						274	14	3	NaN	NaN	NaN	0.0083512	1	1726	88.35	0	1	106980			12178	1646	10247	10512	12178	12178		
LLDHMQNTPGFMYK	14	Unmodified	_LLDHMQNTPGFMYK_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.605821	1693.79563	-0.75449	-0.00042674	-0.6528	-0.00036923	-1.4073	-0.00079597	565.605858625249	10.277	0.1064	10.277	10.232	10.339	0	741	40	0.827064408645228	0.0265299389954775	0.827064408645228	500.941096775701	0	16.0688050396903						396	13	5	NaN	NaN	NaN	0.0081217	1	24305	64.266	57.126	1	129780			12179	3072	10248	10513	12179	12179		
LLDHMQNTPGFMYK	14	Unmodified	_LLDHMQNTPGFMYK_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.905093	1693.79563	1.844	0.0015635	-2.7856	-0.002362	-0.94165	-0.00079843	848.904183781467	10.277	0.12416	10.277	10.223	10.347	0	321	28	1.10999792833052	0.0180169954366338	1.10999792833052	448.208761432038	0	7.27512637931312						292	15	4	NaN	NaN	NaN	0.0036445	1	24306	38.584	29.778	1	44792			12180	3072	10248	10513	12180	12180		
LLDIACWIHHK	11	Unmodified	_LLDIACWIHHK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.251818	1404.73363	-1.3379	-0.00062782	-2.2457	-0.0010538	-3.5836	-0.0016816	469.250912978865	12.662	0.18625	12.662	12.609	12.795	0	813	37	0.778007628350577	0.0245693858878535	0.778007628350577	472.013209438422	0	14.9061195086779						574	22	5	NaN	NaN	NaN	0.00474	1	15614	43.272	37.009	1	350990			12181	557	10249	10514	12181	12181		
LLDIACWIHHK	11	Unmodified	_LLDIACWIHHK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.374089	1404.73363	1.6626	0.0011694	0.2098	0.00014757	1.8724	0.001317	703.374451784842	12.653	0.1419	12.653	12.618	12.76	0	408	37	1.0518390438467	0.0241138939536367	1.0518390438467	425.433171402207	0	9.75325116477353						322	17	4	NaN	NaN	NaN	0.00084526	1	15616	81.163	54.217	1	94819			12182	557	10249	10514	12182	12182		
LLDIEGLYSK	10	Unmodified	_LLDIEGLYSK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.821347	1149.62814	0.53668	0.00030903	-1.3199	-0.00076003	-0.78323	-0.000451	575.820742530893	13.655	0.13302	13.655	13.584	13.717	0	582	46	0.934820374997243	0.0303955552959029	0.934820374997243	378.919870220712	0	12.3205272114913						419	16	4	NaN	NaN	NaN	0.0088446	1	8063	53.517	20.121	1	152900			12183	2422	10250	10515	12183	12183		
LLDILSYLR	9	Unmodified	_LLDILSYLR_			0	0	0	O15091	O15091	O15091	KIAA0391	Mitochondrial ribonuclease P protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.334424	1104.6543	-0.97494	-0.00053947	0.63561	0.0003517	-0.33934	-0.00018777	553.334582450485	19.055	0.079801	19.055	19.029	19.109	0	624	31	0.906433495720521	0.0202960249854377	0.906433495720521	367.590775287074	0	8.23075448432365						155	10	3	NaN	NaN	NaN	5.7928E-06	1	6853	117.39	63.709	1	43523			12184	143	10251	10516	12184	12184		
LLDLDALR	8	Unmodified	_LLDLDALR_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.776742	927.538931	-0.44009	-0.00020454	-1.3708	-0.00063711	-1.8109	-0.00084165	464.776156760877	13.318	0.088678	13.318	13.283	13.371	0	660	31	0.882057989648486	0.020329837424522	0.882057989648486	358.546005637464	0	8.26383535931262						180	11	3	NaN	NaN	NaN	0.00064412	1	2834	105.04	31.403	1	57340			12185	914	10252	10517	12185	12185		
LLDLELTSR	9	Unmodified	_LLDLELTSR_			0	0	0	Q9Y2Q9	Q9Y2Q9	Q9Y2Q9	MRPS28	28S ribosomal protein S28, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.305864	1058.59717	0.078169	4.1454E-05	-3.4888	-0.0018501	-3.4106	-0.0018087	530.303444367176	12.405	0.17732	12.405	12.307	12.485	0	639	64	0.896281965493857	0.0426837906416542	0.896281965493857	363.668777173547	0	17.3190609042646						388	21	3	NaN	NaN	NaN	0.0057195	1	5692	77.072	57.816	1	125190			12186	3347	10253	10518	12186	12186		
LLDLSVFR	8	Unmodified	_LLDLSVFR_			0	0	0	O15427	O15427	O15427	SLC16A3	Monocarboxylate transporter 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.78711	961.559667	-0.89356	-0.00043051	-1.7685	-0.00085203	-2.662	-0.0012825	481.786375185874	15.358	0.22178	15.358	15.304	15.526	0	732	52	0.833184998970724	0.0346688965431766	0.833184998970724	338.504766996339	0	14.0852112806469						535	26	4	NaN	NaN	NaN	2.4845E-05	1	3479	126.2	67.517	1	207820			12187	175	10254	10519	12187	12187		
LLDLVQQSCNYK	12	Unmodified	_LLDLVQQSCNYK_			0	0	0	P55769	P55769	P55769	NHP2L1	NHP2-like protein 1;NHP2-like protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.876859	1479.73916	2.1756	0.0016119	0.61108	0.00045274	2.7867	0.0020646	740.877598118478	10.463	0.22171	10.463	10.383	10.605	0	426	94	1.03977710643793	0.0622899894930677	1.03977710643793	420.346650456407	0	25.1817320060786						1206	26	5	NaN	NaN	NaN	3.244E-05	1	17897	110.88	95.005	1	557260			12188	1276	10255	10520	12188	12188		
LLDLYESVDK	10	Unmodified	_LLDLYESVDK_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.816261	1193.61797	0.016844	1.007E-05	2.1347	0.0012762	2.1516	0.0012863	597.817918027012	11.687	0.10639	11.687	11.624	11.731	0	585	40	0.932794566565362	0.0263428128199913	0.932794566565362	377.93350482749	0	10.6731234646147						135	13	2	NaN	NaN	NaN	0.037768	1	9265	36.24	21.478	1	48932			12189	2072	10256	10521	12189	12189		
LLDMDGIIVEK	11	Unmodified	_LLDMDGIIVEK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.341589	1244.66863	1.1116	0.00069292	0.27982	0.00017442	1.3914	0.00086735	623.341948669221	14.116	0.18621	14.116	14.063	14.249	0	495	55	0.993446994398923	0.0363260498310551	0.993446994398923	402.318898196269	0	14.7110579892542						624	22	4	NaN	NaN	NaN	0.00023345	1	10773	78.932	59.676	1	259030			12190	1728	10257	10522	12190	12190		
LLDNLLALIR	10	Unmodified	_LLDNLLALIR_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.368798	1152.72304	-0.11834	-6.8324E-05	-0.8521	-0.00049197	-0.97043	-0.0005603	577.368446254362	19.747	0.10642	19.747	19.712	19.818	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	369.046921277995	0	9.04729496139225						232	13	4	NaN	NaN	NaN	2.6593E-07	1	8152	150.17	107.34	1	131380			12191	2947	10258	10523	12191	12191		
LLDNWDTLASTLSK	14	Unmodified	_LLDNWDTLASTLSK_			0	0	0	CON__P15497	CON__P15497	CON__P15497			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.914495	1575.81444	0.49367	0.00038946	1.704	0.0013443	2.1977	0.0017338	788.916236051569	16.847	0.13311	16.847	16.794	16.927	0	381	34	1.06991323971056	0.0220754584082121	1.06991323971056	432.285255545459	0	8.91931684279251						278	16	4	NaN	NaN	NaN	0.00015155	1	20853	72.327	57.179	1	84259		+	12192	30	10259	10524	12192	12192		
LLDPEDISVDHPDEK	15	Unmodified	_LLDPEDISVDHPDEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.415056	1720.81556	2.658	0.0022896	-0.89031	-0.00076693	1.7677	0.0015227	861.414358509099	9.6026	0.19501	9.6026	9.4874	9.6824	0	276	43	1.13998907770044	0.0279667154484231	1.13998907770044	460.260289448716	0	11.2913086616462						529	23	4	NaN	NaN	NaN	3.3406E-05	1	25079	56.938	50.561	1	126330			12193	1511	10260	10525	12193	12193		
LLDPQTNTEIANYPIYK	17	Unmodified	_LLDPQTNTEIANYPIYK_			0	0	0	Q9Y3P9	Q9Y3P9	Q9Y3P9	RABGAP1	Rab GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.01748	1992.02041	2.2759	0.0022691	-1.5595	-0.0015548	0.71641	0.00071427	997.517539845399	12.751	0.13302	12.751	12.715	12.848	0	195	67	1.19381749893585	0.0437969629852113	1.19381749893585	481.468306558918	0	17.6633778778664						491	16	4	NaN	NaN	NaN	1.5992E-06	1	31495	69.641	55.278	1	108030			12194	3397	10261	10526	12194	12194		
LLDSSTVTHLFK	12	Unmodified	_LLDSSTVTHLFK_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.253882	1359.73982	-1.7093	-0.00077647	-0.40864	-0.00018563	-2.118	-0.0009621	454.253691288334	12.538	0.12413	12.538	12.493	12.618	0	813	31	0.778007628350577	0.0204744871478547	0.778007628350577	472.165209716969	0	12.4257657196878						289	15	4	NaN	NaN	NaN	0.0022786	1	14202	47.334	35.377	1	125820			12195	1314	10262	10527	12195	12195		
LLDSSTVTHLFK	12	Unmodified	_LLDSSTVTHLFK_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.253882	1359.73982	-1.3195	-0.00059937	0.52857	0.0002401	-0.79089	-0.00035926	454.254202128952	12.538	0.25716	12.538	12.493	12.751	0	768	58	0.808687310729125	0.0388231009534569	0.808687310729125	490.784403838473	0	23.5613595067096						801	30	5	NaN	NaN	NaN	0.00048789	1	14203	78.932	50.835	1	571180			12196	1314	10262	10527	12196	12196		
LLDSSTVTHLFK	12	Unmodified	_LLDSSTVTHLFK_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.877185	1359.73982	1.5985	0.0010884	0.82058	0.00055872	2.4191	0.0016471	680.87770712121	12.538	0.19509	12.538	12.493	12.689	0	381	43	1.06991323971056	0.0281018521198355	1.06991323971056	432.883130232717	0	11.3699104370951						614	23	5	NaN	NaN	NaN	2.7699E-07	1	14205	136.84	99.118	1	486320			12197	1314	10262	10527	12197	12197		
LLDSVEQDFHLEIAK	15	Unmodified	_LLDSVEQDFHLEIAK_			0	0	0	Q6IBS0	Q6IBS0	Q6IBS0	TWF2	Twinfilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.959434	1755.90432	1.5708	0.0013806	0.13964	0.00012274	1.7104	0.0015034	878.959392151723	14.693	0.062072	14.693	14.666	14.728	0	198	28	1.1918274123006	0.0179132408204183	1.1918274123006	481.112700950373	0	7.23115409575115						170	8	4	NaN	NaN	NaN	0.066475	1	26049	34.472	26.508	1	39828			12198	2037	10263	10528	12198	12198		
LLDSVPPTAISHFK	14	Unmodified	_LLDSVPPTAISHFK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.924666	1523.83478	2.3878	0.0018217	-0.17638	-0.00013457	2.2114	0.0016871	762.924584513785	10.693	0.30146	10.693	10.613	10.915	0	261	40	1.14997238118939	0.0259494554847892	1.14997238118939	464.770210656496	0	10.4876726514187						697	35	3	NaN	NaN	NaN	0.0026302	1	19249	69.276	42.329	1	169180			12199	3011	10264	10529	12199	12199		
LLDSWFTSTQEK	12	Unmodified	_LLDSWFTSTQEK_			0	0	0	Q8N5M9	Q8N5M9	Q8N5M9	JAGN1	Protein jagunal homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.861731	1453.70891	1.6659	0.0012125	0.9228	0.00067167	2.5887	0.0018842	727.861573154867	13.797	0.19507	13.797	13.7	13.895	0	432	58	1.035754240522	0.0382304341637099	1.035754240522	418.789797396968	0	15.4578327091851						694	23	5	NaN	NaN	NaN	3.0126E-07	1	17076	144.47	126.14	1	293630			12200	2260	10265	10530	12200	12200		
LLDTAFDLDVFK	12	Unmodified	_LLDTAFDLDVFK_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.871568	1395.72858	0.55775	0.0003898	-0.88648	-0.00061953	-0.32873	-0.00022974	698.871213503237	18.452	0.13307	18.452	18.408	18.541	0	489	34	0.997481546940468	0.0221854416206791	0.997481546940468	403.472788227361	0	8.97382213857128						351	16	4	NaN	NaN	NaN	0.00025419	1	15322	72.922	59.648	1	94116			12201	1526	10266	10531	12201	12201		
LLDTMVDTFLQK	12	Unmodified	_LLDTMVDTFLQK_			0	0	0	Q6P1K2	Q6P1K2	Q6P1K2	PMF1	Polyamine-modulated factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.378703	1422.74285	0.5141	0.00036623	-2.4353	-0.0017349	-1.9212	-0.0013686	712.377158270414	17.193	0.13301	17.193	17.131	17.264	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	406.659555794929	0	8.15255583714082						268	16	4	NaN	NaN	NaN	0.00043973	1	16178	76.85	66.148	1	57514			12202	2057	10267	10532	12202	12202		
LLDTVDDMLANDIAR	15	Unmodified	_LLDTVDDMLANDIAR_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.921994	1673.82944	1.6379	0.0013724	1.3318	0.0011159	2.9697	0.0024883	837.92259348957	16.307	0.10641	16.307	16.262	16.369	0	342	43	1.09598084995137	0.028043816728484	1.09598084995137	442.591595970475	0	11.3249767124252						387	13	4	NaN	NaN	NaN	4.5867E-17	1	23737	172.51	158.71	1	125270			12203	2897	10268	10533	12203	12203		
LLDVDNR	7	Unmodified	_LLDVDNR_			0	0	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.729792	843.445031	-1.4993	-0.0006338	2.329	0.00098452	0.82965	0.00035072	422.730631410034	5.2391	0.21282	5.2391	5.1859	5.3987	0	783	49	0.798467866007927	0.0327090588093994	0.798467866007927	325.039479216182	0	13.3151700821898						423	25	2	NaN	NaN	NaN	0.0092387	1	1466	66.087	35.029	1	160210			12204	477	10269	10534	12204	12204		
LLDVLSGHEGPISGLCFNPMK	21	Unmodified	_LLDVLSGHEGPISGLCFNPMK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.053663	2283.13916	-0.29176	-0.00022234	-1.281	-0.00097622	-1.5728	-0.0011986	762.387391667703	16.963	0.1774	16.963	16.847	17.025	0	582	61	0.934820374997243	0.0405414565630254	0.934820374997243	565.020809133276	0	24.5039231100945						640	21	5	NaN	NaN	NaN	2.6443E-11	1	35496	106.58	102.73	1	141530			12205	1826	10270	10535	12205	12205		
LLDVTCSSLSVTQEEAEELLQALHR	25	Unmodified	_LLDVTCSSLSVTQEEAEELLQALHR_			0	0	0	Q9P000	Q9P000	Q9P000	COMMD9	COMM domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.814806	2840.42259	1.5244	0.0014448	-0.62148	-0.00058905	0.90291	0.00085579	948.482350253763	19.871	0.017725	19.871	19.862	19.88	0	276	25	1.13998907770044	0.0159809777613957	1.13998907770044	688.210308685677	0	9.64770088890225						76	3	5	NaN	NaN	NaN	0.071492	1	37984	13.739	13.361	1	12931			12206	3138	10271	10536	12206	12206		
LLDVVHPAAK	10	Unmodified	_LLDVVHPAAK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	354.88172	1061.62333	-0.86412	-0.00030666	-0.64903	-0.00023033	-1.5132	-0.00053699	354.881224840412	6.0017	0.079735	6.0017	5.9663	6.0461	0	873	19	0.737001551771189	0.0123206977586811	0.737001551771189	448.538610401426	0	7.4983677287704						93	10	2	NaN	NaN	NaN	0.059819	1	5778	15.582	9.8339	1	25828			12207	2679	10272	10537	12207	12207		
LLDWIEGK	8	Unmodified	_LLDWIEGK_			0	0	0	O14976	O14976	O14976	GAK	Cyclin-G-associated kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.271293	972.528032	-1.5268	-0.00074395	-0.49481	-0.00024111	-2.0216	-0.00098506	487.271437722041	13.132	0.070947	13.132	13.096	13.167	0	750	28	0.820941264895493	0.0183694328474171	0.820941264895493	333.477371422031	0	7.46191042211763						72	9	2	NaN	NaN	NaN	0.062689	1	3690	39.324	18.976	1	17718			12208	133	10273	10538	12208	12208		
LLDWLVDR	8	Unmodified	_LLDWLVDR_			0	0	0	Q96JB5	Q96JB5	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.290017	1028.56548	-0.7662	-0.00039481	-0.38382	-0.00019778	-1.15	-0.00059259	515.289268705285	15.677	0.12408	15.677	15.633	15.757	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	356.38088579372	0	7.42935653580213						226	15	3	NaN	NaN	NaN	0.015283	1	4961	39.324	20.921	1	60786			12209	2566	10274	10539	12209	12209		
LLEAAAQSTK	10	Unmodified	_LLEAAAQSTK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.290214	1030.56587	2.1134	0.0010911	-0.19378	-0.00010005	1.9196	0.00099107	516.290322999025	3.909	0.15959	3.909	3.8824	4.042	0	672	34	0.873923798053065	0.0223674774771112	0.873923798053065	354.720709472561	0	9.07883215615402						258	19	3	NaN	NaN	NaN	0.0013898	1	5021	72.042	8.7402	1	74821			12210	1816	10275	10540	12210	12210		
LLEAFHNQGPVIK	13	Unmodified	_LLEAFHNQGPVIK_			0	0	0	Q9Y2R9	Q9Y2R9	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.276909	1464.8089	-0.075731	-3.7054E-05	0.27886	0.00013644	0.20313	9.9387E-05	489.277334830103	9.2036	0.34585	9.2036	9.1238	9.4696	0	711	64	0.847456455381371	0.0427787122423026	0.847456455381371	513.942114736303	0	25.9432584363414						509	40	4	NaN	NaN	NaN	0.0019229	1	17427	44.57	39.419	1	149450			12211	3350	10276	10541	12211	12211		
LLEAFHNQGPVIK	13	Unmodified	_LLEAFHNQGPVIK_			0	0	0	Q9Y2R9	Q9Y2R9	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.411726	1464.8089	1.3142	0.00096382	0.97744	0.00071687	2.2916	0.0016807	733.41277504155	9.2213	0.097531	9.2213	9.1858	9.2834	0	402	22	1.05585747106793	0.014061585996056	1.05585747106793	426.887701303444	0	5.68515949076499						94	12	2	NaN	NaN	NaN	0.00073254	1	17429	77.358	68.885	1	21096			12212	3350	10276	10541	12212	12212		
LLEAHEEQNVDSYTESVK	18	Unmodified	_LLEAHEEQNVDSYTESVK_			0	0	0	P54920	P54920	P54920	NAPA	Alpha-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.99747	2089.98039	2.9872	0.0031246	-1.3842	-0.0014479	1.603	0.0016768	1045.996299393	7.7664	0.062193	7.7664	7.7398	7.802	0	156	88	1.21966378336455	0.057657141640111	1.21966378336455	491.732571370781	0	23.2456640127249						343	8	4	NaN	NaN	NaN	0.0033883	1	33184	38.839	37.251	1	56201			12213	1260	10277	10542	12213	12213		
LLEAHEEQNVDSYTESVK	18	Unmodified	_LLEAHEEQNVDSYTESVK_			0	0	0	P54920	P54920	P54920	NAPA	Alpha-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.667408	2089.98039	1.9087	0.0013316	0.11425	7.9709E-05	2.023	0.0014114	697.667758145216	7.7664	0.088732	7.7664	7.7309	7.8197	0	597	124	0.924688525662974	0.0830698201356349	0.924688525662974	559.209048872039	0	50.2368027922852						752	10	3	NaN	NaN	NaN	2.3713E-07	1	33185	116.36	94.999	1	220190			12214	1260	10277	10542	12214	12214		
LLEAISSLDGK	11	Unmodified	_LLEAISSLDGK_			0	0	0	Q9BVJ6	Q9BVJ6	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.324254	1144.63395	0.4555	0.00026115	-1.787	-0.0010245	-1.3315	-0.00076336	573.324205431083	11.562	0.16861	11.562	11.447	11.616	0	606	46	0.918606045818476	0.0303997669355048	0.918606045818476	372.366815337297	0	12.3228716513444						369	20	4	NaN	NaN	NaN	0.052297	1	7930	30.918	8.5319	1	70808			12215	2765	10278	10543	12215	12215		
LLEAQACTGGIIHPTTGQK	19	Unmodified	_LLEAQACTGGIIHPTTGQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.020031	1994.02551	1.9873	0.0019833	-0.45235	-0.00045146	1.5349	0.0015319	998.520757224852	7.9793	0.07982	7.9793	7.9438	8.0237	-8.8818E-16	144	40	1.22760721615852	0.0258143909113426	1.22760721615852	495.092298991224	0	10.4109082898259						222	10	3	NaN	NaN	NaN	2.0522E-05	1	31526	47.491	37.006	1	40498			12216	718	10279	10544	12216	12216		
LLEAQACTGGIIHPTTGQK	19	Unmodified	_LLEAQACTGGIIHPTTGQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.682446	1994.02551	1.7916	0.0011926	0.45021	0.0002997	2.2418	0.0014923	666.01696796353	7.9793	0.18635	7.9793	7.9172	8.1036	0	525	40	0.973257487423603	0.0262736050362692	0.973257487423603	588.76804700015	0	15.8941074944177						362	22	2	NaN	NaN	NaN	8.9184E-06	1	31527	72.031	52.141	1	259360			12217	718	10279	10544	12217	12217		
LLEAQIASGGVVDPVNSVFLPK	22	Unmodified	_LLEAQIASGGVVDPVNSVFLPK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.12809	2252.24163	0.60897	0.00068639	-0.31317	-0.00035299	0.2958	0.0003334	1127.62882022806	17.548	0.1419	17.548	17.477	17.619	0	72	67	1.27517645957152	0.043563340748354	1.27517645957152	513.869093708331	0	17.5551032653048						634	17	4	NaN	NaN	NaN	3.8421E-08	1	35211	89.489	86.093	1	167750			12218	718	10280	10545	12218	12218		
LLEAQIATGGIIDPEESHR	19	Unmodified	_LLEAQIATGGIIDPEESHR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.03419	2048.05383	0.47665	0.00048859	-0.30838	-0.0003161	0.16827	0.00017248	1025.53543314774	12.165	0.053203	12.165	12.148	12.201	0	99	28	1.25735632164274	0.0178323467846819	1.25735632164274	506.997582369079	0	7.19044916081447						83	7	3	NaN	NaN	NaN	0.0044441	1	32511	44.16	43.541	1	12157			12219	1816	10281	10546	12219	12219		
LLEAQIATGGIIDPEESHR	19	Unmodified	_LLEAQIATGGIIDPEESHR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.691887	2048.05383	0.68603	0.00046903	0.24976	0.00017076	0.93578	0.00063979	684.026304790245	12.174	0.097488	12.174	12.13	12.227	0	537	37	0.965173861991602	0.0242575920930522	0.965173861991602	583.771502833988	0	14.6718550397485						264	12	3	NaN	NaN	NaN	0.0052582	1	32512	45.17	36.795	1	72714			12220	1816	10281	10546	12220	12220		
LLEAQIATGGIIDPK	15	Unmodified	_LLEAQIATGGIIDPK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.943056	1537.87156	2.0964	0.0016141	0.021854	1.6827E-05	2.1182	0.0016309	769.942975954567	13.141	0.25715	13.141	13.079	13.336	0	333	46	1.10198982404297	0.0300448781538605	1.10198982404297	445.341091932032	0	12.141871505597						549	30	4	NaN	NaN	NaN	4.5523E-08	1	19674	96.313	87.051	1	103940			12221	718	10282	10547	12221	12221		
LLEAQIATGGVIDPVHSHR	19	Unmodified	_LLEAQIATGGVIDPVHSHR_			0	0	0	Q15149;P58107	Q15149;P58107	Q15149	PLEC;EPPK1	Plectin;Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.04744	2012.08032	1.0531	0.0010605	-0.26046	-0.00026229	0.79261	0.00079819	1007.54875226961	10.179	0.06206	10.179	10.161	10.223	0	111	28	1.24942920585258	0.017842122905309	1.24942920585258	503.86181742746	0	7.19525718762003						73	8	2	NaN	NaN	NaN	5.4921E-05	1	31838	63.947	57.425	1	14040			12222	1816;1298	10283	10548	12222	12222		
LLEAQSHFR	9	Unmodified	_LLEAQSHFR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	367.533091	1099.57744	-0.91622	-0.00033674	0.78048	0.00028685	-0.13574	-4.989E-05	367.533350138175	4.7159	0.062055	4.7159	4.6893	4.7514	0	852	19	0.751366682244005	0.0123069623830652	0.751366682244005	457.079386688422	0	7.48670249956888						69	8	2	NaN	NaN	NaN	0.033546	1	6707	33.396	27.648	1	15571			12223	1703	10284	10549	12223	12223		
LLEAQSHFR	9	Unmodified	_LLEAQSHFR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.795998	1099.57744	1.526	0.00084051	1.7905	0.00098619	3.3165	0.0018267	550.797100321815	4.7159	0.10648	4.7159	4.6893	4.7958	0	591	28	0.928742107665821	0.0182373300269247	0.928742107665821	376.659125695106	0	7.39630164957083						173	13	3	NaN	NaN	NaN	7.3943E-05	1	6708	99.305	60.983	1	51140			12224	1703	10284	10549	12224	12224		
LLEDDFWADVSTLHVQK	17	Unmodified	_LLEDDFWADVSTLHVQK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.673945	2015.00001	-0.46796	-0.00031479	0.33114	0.00022275	-0.13682	-9.2035E-05	673.007940781469	16.803	0.1064	16.803	16.75	16.856	0	546	28	0.959108205975751	0.0181994882145681	0.959108205975751	580.166786643881	0	11.0089127902594						212	13	4	NaN	NaN	NaN	0.027856	1	31897	30.875	29.993	1	50578			12225	3048	10285	10550	12225	12225		
LLEDFGDGGAFPEIHVAQYPLDMGR	25	Unmodified	_LLEDFGDGGAFPEIHVAQYPLDMGR_			0	0	0	Q13573	Q13573	Q13573	SNW1	SNW domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	916.442644	2746.3061	0.55363	0.00050737	0.34663	0.00031767	0.90026	0.00082504	916.777674767907	17.974	0.070929	17.974	17.947	18.018	0	465	49	1.01360860968299	0.0322407656624188	1.01360860968299	612.016709754839	0	19.4669689386928						378	9	6	NaN	NaN	NaN	1.5023E-09	1	37748	73.805	73.206	1	79930			12226	1687	10286	10551	12226	12226		
LLEDGEDFNLGDALDSSNSMQTIQK	25	Unmodified	_LLEDGEDFNLGDALDSSNSMQTIQK_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1370.63454	2739.25452	0.86948	0.0011917	-0.56056	-0.00076833	0.30892	0.00042341	1371.13465656838	16.129	0.044344	16.129	16.111	16.156	0	63	31	1.28111162701928	0.0197852478439124	1.28111162701928	515.69763939271	0	7.96433768355115						104	6	3	NaN	NaN	NaN	6.091E-06	1	37725	40.324	39.848	1	19342			12227	536	10287	10552	12227	12227		
LLEDGEDFNLGDALDSSNSMQTIQK	25	Unmodified	_LLEDGEDFNLGDALDSSNSMQTIQK_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	914.092116	2739.25452	1.9481	0.0017808	-0.10653	-9.7377E-05	1.8416	0.0016834	914.426725484236	16.138	0.10643	16.138	16.094	16.2	0	348	64	1.09197348738011	0.0420976254605598	1.09197348738011	659.341961723608	0	25.4188689339571						625	13	6	NaN	NaN	NaN	2.7122E-18	1	37726	165.2	161.81	1	203190			12228	536	10287	10552	12228	12228		
LLEDGEDFNLGDALDSSNSMQTIQK	25	Oxidation (M)	_LLEDGEDFNLGDALDSSNSM(Oxidation (M))QTIQK_	LLEDGEDFNLGDALDSSNSM(1)QTIQK	LLEDGEDFNLGDALDSSNSM(69)QTIQK	0	1	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	919.423754	2755.24943	1.9128	0.0017586	0.5358	0.00049263	2.4486	0.0022513	919.758717054498	15.012	0.062086	15.012	14.985	15.047	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	659.322627776026	0	14.5216351010728						284	8	4	NaN	NaN	NaN	4.2832E-06	1	37774	69.369	63.792	1	60284			12229	536	10287	10553	12229	12229	104	
LLEEALLR	8	Unmodified	_LLEEALLR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.792392	955.570232	-0.33354	-0.0001597	-1.1754	-0.00056275	-1.5089	-0.00072245	478.792069023605	11.199	0.17735	11.199	11.119	11.296	0	711	37	0.847456455381371	0.0244534611468455	0.847456455381371	344.333361760913	0	9.93578186810078						338	21	3	NaN	NaN	NaN	0.028207	1	3350	46.835	9.2274	1	130660			12230	1465	10288	10554	12230	12230		
LLEEAQLQDLEK	12	Unmodified	_LLEEAQLQDLEK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.882664	1427.75077	1.7234	0.001232	0.027482	1.9646E-05	1.7509	0.0012517	714.882501731858	11.394	0.12416	11.394	11.35	11.474	0	441	31	1.02971785871157	0.0201254424104516	1.02971785871157	416.420443826293	0	8.13877858858064						180	15	2	NaN	NaN	NaN	0.0005945	1	16323	99.174	65.451	1	62535			12231	3048	10289	10555	12231	12231		
LLEEEIIAFSK	11	Unmodified	_LLEEEIIAFSK_			0	0	0	Q9P0V9	Q9P0V9	Q9P0V9	SEPT10	Septin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.360836	1290.70712	0.77267	0.00049942	-0.12766	-8.2513E-05	0.64501	0.00041691	646.360909543245	14.976	0.12414	14.976	14.932	15.056	0	525	40	0.973257487423603	0.0262590697317363	0.973257487423603	393.988430318546	0	10.6300437437366						262	15	3	NaN	NaN	NaN	0.00010906	1	12105	68.49	56.533	1	69723			12232	3149	10290	10556	12232	12232		
LLEEGVLR	8	Unmodified	_LLEEGVLR_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.776742	927.538931	-0.60794	-0.00028256	-1.8799	-0.00087372	-2.4878	-0.0011563	464.775929324926	8.3164	0.14194	8.3164	8.2721	8.414	0	738	40	0.829104889055312	0.0265188764600823	0.829104889055312	337.021207140146	0	10.7796056621505						257	17	3	NaN	NaN	NaN	0.0088558	1	2833	81.32	32.262	1	70362			12233	2069	10291	10557	12233	12233		
LLEEICNLGR	10	Unmodified	_LLEEICNLGR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.821355	1215.62816	0.36896	0.00022463	-1.6124	-0.00098167	-1.2435	-0.00075704	608.821006050781	11.837	0.15076	11.837	11.766	11.917	0	588	37	0.93076847747433	0.024311389219916	0.93076847747433	377.034588396824	0	9.84802864484504						221	18	2	NaN	NaN	NaN	3.4819E-07	1	9897	125.5	67.212	1	160930			12234	2149	10292	10558	12234	12234		
LLEELEEGQK	10	Unmodified	_LLEELEEGQK_			0	0	0	Q13404;Q15819	Q13404;Q15819	Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.311343	1186.60813	1.5063	0.0008952	-1.56	-0.00092712	-0.053705	-3.1917E-05	594.311329204359	8.343	0.27495	8.343	8.2632	8.5382	0	600	52	0.922661313351899	0.0344626212005175	0.922661313351899	373.853139964429	0	13.9639095741562						910	32	5	NaN	NaN	NaN	3.4109E-07	1	9060	154.28	129.03	1	683770			12235	1871;1659	10293	10559	12235	12235		
LLEENVSAFK	10	Unmodified	_LLEENVSAFK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.311146	1148.60774	0.30759	0.00017696	0.37384	0.00021508	0.68143	0.00039204	575.311344155252	9.31	0.088716	9.31	9.2479	9.3366	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.638572471575	0	8.21547714951498						138	11	2	NaN	NaN	NaN	0.00094365	1	8034	58.916	23.984	1	52534			12236	3042	10294	10560	12236	12236		
LLEEQLQHEISNK	13	Unmodified	_LLEEQLQHEISNK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.614138	1579.82059	-1.3837	-0.00073004	-0.89917	-0.00047442	-2.2828	-0.0012045	527.613502026413	8.9198	0.15977	8.9198	8.8753	9.0351	0	780	49	0.800512323802183	0.0327227183445122	0.800512323802183	485.142312165271	0	19.8312690085612						518	19	4	NaN	NaN	NaN	5.9114E-05	1	20970	125.17	95.416	1	214160			12237	2167	10295	10561	12237	12237		
LLEEQLQHEISNK	13	Unmodified	_LLEEQLQHEISNK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.917569	1579.82059	2.1918	0.0017335	-1.3126	-0.0010381	0.8792	0.00069537	790.916534472082	8.9198	0.11547	8.9198	8.8753	8.9908	0	363	31	1.08195024817156	0.0200533881003893	1.08195024817156	437.139015135293	0	8.10214549064915						269	14	4	NaN	NaN	NaN	3.8706E-05	1	20971	86.838	60.259	1	80762			12238	2167	10295	10561	12238	12238		
LLEEYTQLAR	10	Unmodified	_LLEEYTQLAR_			0	0	0	Q86X76	Q86X76	Q86X76	NIT1	Nitrilase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.335153	1234.65575	1.2758	0.00078885	-1.2644	-0.00078184	0.011337	7.0102E-06	618.334610658637	10.729	0.14187	10.729	10.693	10.835	0	561	37	0.948993180460448	0.0242811063417099	0.948993180460448	384.350514634825	0	9.83405983361337						232	17	3	NaN	NaN	NaN	0.0056272	1	10472	60.892	48.825	1	71576			12239	2184	10296	10562	12239	12239		
LLEFNQGK	8	Unmodified	_LLEFNQGK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.761092	947.507631	-0.70754	-0.00033591	-0.12431	-5.9016E-05	-0.83185	-0.00039493	474.760919687564	7.066	0.15967	7.066	7.0037	7.1634	0	747	37	0.822982596624503	0.024497688241599	0.822982596624503	334.429636006946	0	9.95495286929827						419	19	4	NaN	NaN	NaN	0.00039983	1	3202	92.677	29.375	1	283430			12240	1035	10297	10563	12240	12240		
LLEFQLALK	9	Unmodified	_LLEFQLALK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.831517	1073.64848	0.26422	0.00014211	-0.72851	-0.00039182	-0.46429	-0.00024971	537.83123507086	15.331	0.21292	15.331	15.278	15.491	0	654	67	0.886123392477847	0.0446946456670176	0.886123392477847	359.482159867908	0	18.1317047888587						887	25	4	NaN	NaN	NaN	0.00014076	1	6056	81.642	36.875	1	532180			12241	934	10298	10564	12241	12241		
LLEGDGGPNTGGMGAYCPAPQVSNDLLLK	29	Unmodified	_LLEGDGGPNTGGMGAYCPAPQVSNDLLLK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	982.144157	2943.41064	0.97603	0.0009586	0.93786	0.00092111	1.9139	0.0018797	982.479469227521	15.331	0.044335	15.331	15.313	15.358	0	408	55	1.0518390438467	0.0361608698716229	1.0518390438467	634.885937798104	0	21.8265597900609						213	6	4	NaN	NaN	NaN	0.020374	1	38135	22.212	22.126	1	32940			12242	801	10299	10565	12242	12242		
LLEGEEER	8	Unmodified	_LLEGEEER_			0	0	0	P02545;P20700;Q03252	P02545;P20700;Q03252	P02545	LMNA;LMNB1;LMNB2	Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.743096	973.47164	1.715	0.00083646	1.1141	0.00054339	2.829	0.0013798	487.744003882405	3.5278	0.39013	3.5278	3.4746	3.8647	0	690	64	0.86171403876517	0.042749015256945	0.86171403876517	350.035081484139	0	17.3649892721653						1422	45	4	NaN	NaN	NaN	0.0031851	1	3698	93.561	60.59	1	938260			12243	493;784;1537	10300	10566	12243	12243		
LLEGIGLENLDSPAATK	17	Unmodified	_LLEGIGLENLDSPAATK_			0	0	0	O75165	O75165	O75165	DNAJC13	DnaJ homolog subfamily C member 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.972541	1739.93053	2.0368	0.001774	-6.0165	-0.0052402	-3.9797	-0.0034662	870.966198851379	14.471	0.088694	14.471	14.418	14.506	0	300	40	1.12400150285141	0.0259851749816993	1.12400150285141	453.765629202137	0	10.4903589947043						198	11	3	NaN	NaN	NaN	0.0035026	1	25601	57.279	42.916	1	49857			12244	308	10301	10567	12244	12244		
LLEIDPYLK	9	Unmodified	_LLEIDPYLK_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.320983	1102.62741	1.4026	0.00077467	-0.50187	-0.00027719	0.9007	0.00049748	552.320620679661	13.54	0.16849	13.54	13.487	13.655	0	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	387.320548180764	0	10.6654431859035						460	20	4	NaN	NaN	NaN	0.0021273	1	6793	74.486	13.777	1	262720			12245	1543	10302	10568	12245	12245		
LLEIPAVSHVCADLLDR	17	Unmodified	_LLEIPAVSHVCADLLDR_			0	0	0	O95365	O95365	O95365	ZBTB7A	Zinc finger and BTB domain-containing protein 7A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.011904	1920.01388	-0.72915	-0.0004674	-2.898	-0.0018577	-3.6272	-0.0023251	641.344246815679	16.023	0.13298	16.023	15.934	16.067	0	681	25	0.867820189810857	0.0162819401050979	0.867820189810857	525.123940237777	0	9.85231346665023						210	16	3	NaN	NaN	NaN	0.011277	1	30069	14.949	12.47	1	41436			12246	427	10303	10569	12246	12246		
LLELDPEHQR	10	Unmodified	_LLELDPEHQR_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.222693	1248.64625	-1.8457	-0.00077007	0.2005	8.3652E-05	-1.6452	-0.00068642	417.222720136185	7.0481	0.12422	7.0481	6.986	7.1102	0	846	22	0.755468431110051	0.0143531208129216	0.755468431110051	458.896037056868	0	8.71855128449261						176	15	3	NaN	NaN	NaN	0.0033864	1	10878	74.486	70.284	1	45952			12247	681	10304	10570	12247	12247		
LLELDPEHQR	10	Unmodified	_LLELDPEHQR_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.330402	1248.64625	1.2742	0.00079681	1.0788	0.00067461	2.353	0.0014714	625.330968570413	7.0481	0.14197	7.0481	6.986	7.128	0	507	34	0.985374541851584	0.0222038520438094	0.985374541851584	399.035825967285	0	8.99163928399048						290	17	3	NaN	NaN	NaN	5.5481E-10	1	10880	130.31	117.71	1	78966			12248	681	10304	10570	12248	12248		
LLELDSFLK	9	Unmodified	_LLELDSFLK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.313158	1076.61176	-0.19612	-0.00010577	-1.083	-0.00058409	-1.2791	-0.00068986	539.312487299074	16.697	0.31041	16.697	16.635	16.945	0	648	52	0.890187667287968	0.0345439513125253	0.890187667287968	361.118363523948	0	14.0132868899819						1012	36	5	NaN	NaN	NaN	0.0025252	1	6132	74.486	54.999	1	1095900			12249	1340	10305	10571	12249	12249		
LLELFPVNR	9	Unmodified	_LLELFPVNR_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.826766	1099.63898	-0.24241	-0.00013353	-0.82377	-0.00045375	-1.0662	-0.00058728	550.82653966369	14.71	0.20397	14.71	14.631	14.834	0	630	64	0.902373728295776	0.0426601096058868	0.902373728295776	365.964967394204	0	17.3011526503954						757	24	4	NaN	NaN	NaN	0.00012478	1	6717	85.813	58.076	1	343530			12250	3463	10306	10572	12250	12250		
LLELLWNK	8	Unmodified	_LLELLWNK_			0	0	0	Q92905	Q92905	Q92905	COPS5	COP9 signalosome complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.810585	1027.60662	-0.16088	-8.282E-05	-2.2283	-0.0011472	-2.3892	-0.00123	514.809539030166	15.42	0.15087	15.42	15.367	15.517	-1.7764E-15	699	43	0.85560534332665	0.028505272317873	0.85560534332665	347.29854369401	0	11.5705677165446						436	18	4	NaN	NaN	NaN	0.00039983	1	4939	70.67	21.611	1	163980			12251	2443	10307	10573	12251	12251		
LLELQELVLR	10	Unmodified	_LLELQELVLR_			0	0	0	Q08379	Q08379	Q08379	GOLGA2	Golgin subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.379363	1224.74417	-0.35699	-0.00021897	-0.86354	-0.00052968	-1.2205	-0.00074865	613.378865904851	17.043	0.12415	17.043	16.998	17.122	0	576	31	0.938871150116794	0.0202538779292779	0.938871150116794	380.285026655332	0	8.20373115869108						285	15	3	NaN	NaN	NaN	0.001066	1	10149	74.269	58.687	1	110600			12252	1577	10308	10574	12252	12252		
LLELQYFISR	10	Unmodified	_LLELQYFISR_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.363713	1280.71287	-0.23612	-0.00015144	-0.92019	-0.00059017	-1.1563	-0.00074162	641.362673825722	16.785	0.18621	16.785	16.706	16.892	0	543	34	0.961130371139249	0.0222407417065758	0.961130371139249	389.11135314009	0	9.00411157544323						344	22	3	NaN	NaN	NaN	0.00043828	1	11793	87.895	70.425	1	111740			12253	2441	10309	10575	12253	12253		
LLELTSSYSPDVSDYK	16	Unmodified	_LLELTSSYSPDVSDYK_			0	0	0	P38432	P38432	P38432	COIL	Coilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.946189	1815.87783	2.7797	0.0025266	0.35887	0.0003262	3.1385	0.0028528	908.946189232311	12.875	0.11529	12.875	12.83	12.946	0	276	49	1.13998907770044	0.0319619627805261	1.13998907770044	460.067699738788	0	12.8989540191344						319	14	3	NaN	NaN	NaN	1.5485E-07	1	27628	130.99	124.62	1	68392			12254	1005	10310	10576	12254	12254		
LLENMPMPWEQIR	13	Unmodified	_LLENMPMPWEQIR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.915461	1655.81637	1.1483	0.00095181	-2.1013	-0.0017418	-0.95304	-0.00078999	829.41568169028	17.007	0.2483	17.007	16.874	17.122	0	378	55	1.07192009927972	0.0361060601880221	1.07192009927972	432.913781909364	0	14.5820673353796						556	29	2	NaN	NaN	NaN	0.004719	1	23221	63.212	56.005	1	229330			12255	2064	10311	10577	12255	12255		
LLEPFEVR	8	Unmodified	_LLEPFEVR_			0	0	0	Q8WUY1	Q8WUY1	Q8WUY1	THEM6	Protein THEM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.784567	1001.55458	-0.62051	-0.00031136	0.20045	0.00010058	-0.42006	-0.00021078	501.784773989508	11.82	0.10644	11.82	11.775	11.882	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	355.681997476879	0	8.25835302974332						218	13	3	NaN	NaN	NaN	7.3466E-05	1	4338	113.1	54.415	1	57599			12256	2375	10312	10578	12256	12256		
LLEPLVTQVTTLVNTSNK	18	Unmodified	_LLEPLVTQVTTLVNTSNK_			0	0	0	P26232	P26232	P26232	CTNNA2	Catenin alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.377129	1969.10956	-0.59993	-0.00039438	-0.63573	-0.00041792	-1.2357	-0.0008123	657.376755165633	18.124	0.062067	18.124	18.098	18.16	0	612	22	0.914549654013882	0.0141983560762999	0.914549654013882	553.301337055143	0	8.58998673994631						124	8	4	NaN	NaN	NaN	0.021744	1	31102	37.886	0	1	25096			12257	848	10313	10579	12257	12257		
LLEPLVTQVTTLVNTSNK	18	Unmodified	_LLEPLVTQVTTLVNTSNK_			0	0	0	P26232	P26232	P26232	CTNNA2	Catenin alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.562055	1969.10956	0.85171	0.00083941	-1.4377	-0.0014169	-0.58596	-0.0005775	986.061769192473	18.124	0.079797	18.124	18.089	18.169	0	192	55	1.1958073123591	0.0357945375856583	1.1958073123591	482.309628809274	0	14.4371504990046						298	10	4	NaN	NaN	NaN	1.121E-05	1	31103	86.135	0	1	59454			12258	848	10313	10579	12258	12258		
LLEPSSPQFVQMLSWTSK	18	Unmodified	_LLEPSSPQFVQMLSWTSK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.53498	2077.05541	1.0912	0.0011343	-0.95369	-0.0009914	0.13751	0.00014294	1040.03600603782	18.381	0.079787	18.381	18.346	18.426	0	159	46	1.21767724410157	0.0297940095651237	1.21767724410157	490.95181952319	0	12.012561848999						312	10	4	NaN	NaN	NaN	8.1464E-05	1	32976	54.556	49.462	1	58853			12259	3067	10314	10580	12259	12259		
LLEPVDHGK	9	Unmodified	_LLEPVDHGK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	336.522192	1006.54475	-1.1298	-0.0003802	0.96655	0.00032527	-0.16325	-5.4936E-05	336.522435066401	3.4834	0.17745	3.4834	3.4567	3.6342	0	909	19	0.712342960434231	0.0123396214770952	0.712342960434231	433.834487755961	0	7.51513478753935						180	21	3	NaN	NaN	NaN	0.032593	1	4436	36.57	24.921	1	35360			12260	2110	10315	10581	12260	12260		
LLEPVLLLGK	10	Unmodified	_LLEPVLLLGK_			0	0	0	P62249	P62249	P62249	RPS16	40S ribosomal protein S16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.862818	1093.71108	0.014328	7.8497E-06	-0.86575	-0.00047431	-0.85142	-0.00046646	547.862339678228	16.307	0.35471	16.307	16.2	16.555	0	633	106	0.900343422309015	0.0710017221302427	0.900343422309015	365.166052963096	0	28.7972544491856						2311	41	5	NaN	NaN	NaN	3.6446E-07	1	6560	121.67	78.837	1	3814500			12261	1372	10316	10582	12261	12261		
LLEPVVCMSDMLR	13	Unmodified	_LLEPVVCMSDMLR_			0	0	0	Q9UN37	Q9UN37	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.890597	1561.76664	0.9878	0.00077235	0.56221	0.00043959	1.55	0.0012119	781.891453726938	17.326	0.14188	17.326	17.255	17.397	0	327	49	1.10599442759226	0.0320368379647857	1.10599442759226	446.898431646082	0	12.9451037764547						471	17	4	NaN	NaN	NaN	0.00038711	1	20394	72.922	56.27	1	91313			12262	3291	10317	10583	12262	12262		
LLEPVVSMSDMLR	13	Unmodified	_LLEPVVSMSDMLR_			0	0	0	O75351	O75351	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.391287	1488.76802	0.11102	8.2757E-05	1.4472	0.0010787	1.5583	0.0011615	745.392108881223	16.998	0.10639	16.998	16.954	17.06	0	372	34	1.07593298845566	0.022069372225481	1.07593298845566	434.938804600993	0	8.9213979653349						310	13	4	NaN	NaN	NaN	8.1447E-05	1	18200	67.548	59.547	1	71054			12263	322	10318	10584	12263	12263		
LLEQQELR	8	Unmodified	_LLEQQELR_			0	0	0	Q9BSC4	Q9BSC4	Q9BSC4	NOL10	Nucleolar protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.790381	1027.56621	0.91053	0.00046873	-0.14523	-7.4761E-05	0.76531	0.00039397	514.790399374506	5.7534	0.11525	5.7534	5.7002	5.8155	0	675	34	0.871889544407995	0.0223767933297507	0.871889544407995	353.908633731545	0	9.08296286544231						166	14	2	NaN	NaN	NaN	0.0016165	1	4932	113.14	27.323	1	56681			12264	2721	10319	10585	12264	12264		
LLESDYFR	8	Unmodified	_LLESDYFR_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.763832	1041.51311	0.90854	0.00047404	0.18732	9.7735E-05	1.0959	0.00057178	521.763805690574	9.8952	0.16847	9.8952	9.8243	9.9928	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	361.272057450587	0	9.07127823876431						325	20	3	NaN	NaN	NaN	0.00099046	1	5256	92.677	58.864	1	117580			12265	2549	10320	10586	12265	12265		
LLESEAVNENLR	12	Unmodified	_LLESEAVNENLR_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.864805	1385.71506	1.6808	0.0011663	-2.7893	-0.0019354	-1.1085	-0.00076915	694.363377568505	8.0591	0.15086	8.0591	8.0148	8.1656	0	498	67	0.991429299781895	0.0443739691308193	0.991429299781895	401.053140207892	0	17.9501651477499						350	18	2	NaN	NaN	NaN	0.00067216	1	15012	57.293	44.697	1	177430			12266	2140	10321	10587	12266	12266		
LLESLDQLELR	11	Unmodified	_LLESLDQLELR_			0	0	0	O95816	O95816	O95816	BAG2	BAG family molecular chaperone regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.874642	1327.73473	0.44558	0.00029625	0.71942	0.00047832	1.165	0.00077458	664.875623418374	14.755	0.25714	14.755	14.648	14.905	0	495	52	0.993446994398923	0.0342960787015847	0.993446994398923	402.042646214783	0	13.8794382727164						801	30	5	NaN	NaN	NaN	2.5508E-11	1	13227	178.95	83.64	1	544920			12267	455	10322	10588	12267	12267		
LLESLQENHFQEDEQFLGAVMPR	23	Unmodified	_LLESLQENHFQEDEQFLGAVMPR_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	910.777915	2729.31192	0.41752	0.00038027	2.556	0.0023279	2.9735	0.0027082	911.449511168557	16.972	0.19512	16.972	16.839	17.034	0	255	40	1.15396378101328	0.0259458875864387	1.15396378101328	696.784986052539	0	15.6666138205505						391	23	4	NaN	NaN	NaN	1.4161E-09	1	37689	85.513	85.491	1	78526			12268	1154	10323	10589	12268	12268		
LLESPGVEAGEGEAEK	16	Unmodified	_LLESPGVEAGEGEAEK_			0	0	0	Q6NYC8	Q6NYC8	Q6NYC8	PPP1R18	Phostensin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.8965	1613.77845	2.4569	0.0019849	-1.5554	-0.0012566	0.90151	0.00072832	807.895363913199	6.8264	0.10645	6.8264	6.7909	6.8974	0	393	46	1.0618830335572	0.0301112043248537	1.0618830335572	428.952826691689	0	12.1635677396303						237	13	3	NaN	NaN	NaN	9.4632E-05	1	22002	81.48	73.923	1	42491			12269	2051	10324	10590	12269	12269		
LLETCSIALVGK	12	Unmodified	_LLETCSIALVGK_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.368138	1302.72172	1.0155	0.00066251	-0.14844	-9.6835E-05	0.86711	0.00056568	652.368203597386	11.553	0.13307	11.553	11.509	11.642	0	495	43	0.993446994398923	0.0282418742669083	0.993446994398923	402.122152973358	0	11.4315945875736						362	16	4	NaN	NaN	NaN	0.0029455	1	12441	64.064	47.412	1	155750			12270	741	10325	10591	12270	12270		
LLETESFQMNR	11	Unmodified	_LLETESFQMNR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.334827	1366.6551	1.1333	0.00077558	-3.0916	-0.0021157	-1.9583	-0.0013401	684.332608484184	9.6115	0.12413	9.6115	9.5494	9.6736	0	507	25	0.985374541851584	0.0161493714671825	0.985374541851584	398.658784318203	0	6.53364636812358						224	15	3	NaN	NaN	NaN	0.00012588	1	14389	78.816	68.114	1	59643			12271	1625	10326	10592	12271	12271		
LLETHIHNQGLAAIEK	16	Unmodified	_LLETHIHNQGLAAIEK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.331854	1785.97373	-0.093091	-5.5513E-05	1.5661	0.00093391	1.473	0.0008784	596.332770790655	7.6068	0.11527	7.6068	7.5713	7.6865	0	684	34	0.86578508874114	0.0223861150035557	0.86578508874114	524.174190060696	0	13.5532753488006						321	14	5	NaN	NaN	NaN	4.2877E-07	1	26868	108.34	58.248	1	125620			12272	1694	10327	10593	12272	12272		
LLETHIHNQGLAAIEK	16	Unmodified	_LLETHIHNQGLAAIEK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.994143	1785.97373	2.0478	0.0018307	0.48548	0.00043402	2.5333	0.0022648	894.495740886804	7.6068	0.062077	7.6068	7.5801	7.6422	0	270	31	1.14398322290989	0.0199652358426974	1.14398322290989	461.73821209631	0	8.05843312862498						143	8	3	NaN	NaN	NaN	0.00011425	1	26869	49.487	36.804	1	27787			12273	1694	10327	10593	12273	12273		
LLETIDQLYLEYAK	14	Unmodified	_LLETIDQLYLEYAK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.461278	1710.908	2.1304	0.0018246	-3.6438	-0.0031207	-1.5134	-0.0012961	857.460189415842	18.328	0.15959	18.328	18.231	18.39	0	342	46	1.09598084995137	0.0300490171163135	1.09598084995137	442.512849451692	0	12.1325807726957						678	19	6	NaN	NaN	NaN	9.9918E-08	1	24792	156.14	134.99	1	217370			12274	671	10328	10594	12274	12274		
LLETLFVHR	9	Unmodified	_LLETLFVHR_			0	0	0	Q9NZ01	Q9NZ01	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.332216	1126.64988	0.88933	0.00050188	-4.6652	-0.0026327	-3.7758	-0.0021308	564.829331842593	11.447	0.11529	11.447	11.403	11.518	0	570	73	0.942920803299286	0.0486362780919285	0.942920803299286	382.295690826847	0	19.7189832564325						298	14	3	NaN	NaN	NaN	0.044796	1	7445	41.025	22.622	1	76480			12275	3124	10329	10595	12275	12275		
LLETLFVHR	9	Unmodified	_LLETLFVHR_			0	0	0	Q9NZ01	Q9NZ01	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	376.557236	1126.64988	-1.7755	-0.00066856	-0.95126	-0.0003582	-2.7267	-0.0010268	376.556873296649	11.456	0.062089	11.456	11.42	11.483	0	861	19	0.745211914437924	0.0123121104560218	0.745211914437924	453.200651195335	0	7.48761039397306						102	8	3	NaN	NaN	NaN	0.025162	1	7446	66.087	54.438	1	25855			12276	3124	10329	10595	12276	12276		
LLETTDRPDGHQNNLR	16	Unmodified	_LLETTDRPDGHQNNLR_			0	0	1	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.985405	1877.93439	1.8988	0.0011905	0.73923	0.00046349	2.638	0.001654	626.986100587534	4.0864	0.09755	4.0864	4.0509	4.1484	0	633	31	0.900343422309015	0.0203072864196308	0.900343422309015	544.891447968276	0	12.2900511375105						231	12	4	NaN	NaN	NaN	2.0793E-06	1	29102	74.524	47.146	1	61890			12277	1780	10330	10596	12277	12277		
LLETTDRPDGHQNNLR	16	Unmodified	_LLETTDRPDGHQNNLR_			0	0	1	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	470.490873	1877.93439	0.56607	0.00026633	4.1546	0.0019547	4.7206	0.002221	470.744259201351	4.0864	0.31929	4.0864	3.9711	4.2904	0	741	55	0.827064408645228	0.0367158992406232	0.827064408645228	667.38762259835	0	29.6273620888829						457	37	3	NaN	NaN	NaN	0.0080017	1	29103	51.531	33.433	1	139270			12278	1780	10330	10596	12278	12278		
LLETTEEDK	9	Unmodified	_LLETTEEDK_			0	0	0	Q7L0Y3	Q7L0Y3	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.269144	1076.52373	1.6705	0.00090084	1.7398	0.0009382	3.4103	0.001839	539.271548305819	3.6962	0.28371	3.6962	3.5633	3.847	0	675	49	0.871889544407995	0.0325458093400007	0.871889544407995	353.695800361869	0	13.2027229329289						336	33	3	NaN	NaN	NaN	0.001029	1	6123	91.783	48.948	1	85881			12279	2111	10331	10597	12279	12279		
LLEVDLK	7	Unmodified	_LLEVDLK_			0	0	0	Q13247	Q13247	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.255111	828.49567	-2.2204	-0.00092204	0.19935	8.2781E-05	-2.0211	-0.00083926	415.255063862634	9.5849	0.10641	9.5849	9.5317	9.6381	0	780	28	0.800512323802183	0.0184001219300317	0.800512323802183	325.965793778939	0	7.49246472816844						168	13	3	NaN	NaN	NaN	0.041846	1	1294	38.322	0	1	39821			12280	1645	10332	10598	12280	12280		
LLEVEHPAAK	10	Unmodified	_LLEVEHPAAK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	369.544996	1105.61316	-0.092798	-3.4293E-05	0.04139	1.5295E-05	-0.051408	-1.8998E-05	369.545124186477	4.2637	0.22169	4.2637	4.2105	4.4322	0	849	34	0.753417699604308	0.0225580498497536	0.753417699604308	458.296173820244	0	13.7218277993974						408	26	4	NaN	NaN	NaN	0.036753	1	6876	36.211	27.448	1	183100			12281	747	10333	10599	12281	12281		
LLEVEHPAAK	10	Unmodified	_LLEVEHPAAK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.813856	1105.61316	1.9644	0.0010879	0.7109	0.00039371	2.6753	0.0014816	553.814377561622	4.2726	0.28373	4.2726	4.2017	4.4854	0	615	49	0.912521036363781	0.0324601421719642	0.912521036363781	370.055532975795	0	13.1635926551151						562	33	4	NaN	NaN	NaN	0.00049123	1	6878	111.39	90.117	1	299270			12282	747	10333	10599	12282	12282		
LLEVIILQCK	10	Unmodified	_LLEVIILQCK_			0	0	0	O15397;O95373	O15397;O95373	O95373	IPO8;IPO7	Importin-8;Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.870317	1227.72608	0.5045	0.0003102	-0.72154	-0.00044366	-0.21705	-0.00013346	614.869969531248	14.701	0.10642	14.701	14.657	14.764	0	549	73	0.957085760909907	0.0484950750884032	0.957085760909907	387.652269032203	0	19.6421539873647						472	13	4	NaN	NaN	NaN	2.4534E-10	1	10247	118.06	36.417	1	134070			12283	429;172	10334	10600	12283	12283		
LLEVLSGER	9	Unmodified	_LLEVLSGER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.292756	1014.57096	-0.11215	-5.7007E-05	-0.44498	-0.00022618	-0.55713	-0.00028319	508.29298014966	9.9484	0.16838	9.9484	9.8776	10.046	0	690	34	0.86171403876517	0.0223923326891349	0.86171403876517	349.837508771756	0	9.09080916771524						336	17	3	NaN	NaN	NaN	0.0017759	1	4623	58.426	18.223	1	97651			12284	1511	10335	10601	12284	12284		
LLEVNQQSLLGLTHGEAVQLLR	22	Unmodified	_LLEVNQQSLLGLTHGEAVQLLR_			0	0	0	Q14160	Q14160	Q14160	SCRIB	Protein scribble homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	811.127096	2430.35946	1.7975	0.001458	0.25706	0.00020851	2.0546	0.0016665	811.460891742732	17.628	0.079787	17.628	17.601	17.681	0	348	64	1.09197348738011	0.0421092301402715	1.09197348738011	659.765001780473	0	25.4421894116919						312	10	3	NaN	NaN	NaN	0.00010591	1	36486	60.324	51.912	1	74436			12285	1730	10336	10602	12285	12285		
LLEVSDDPQVLAVAAHDVGEYVR	23	Unmodified	_LLEVSDDPQVLAVAAHDVGEYVR_			0	0	0	Q9UI12	Q9UI12	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.430732	2494.27037	1.5959	0.0013285	2.3746	0.0019767	3.9704	0.0033051	832.766415319776	17.974	0.10639	17.974	17.938	18.045	0	321	46	1.10999792833052	0.0300324663961253	1.10999792833052	670.557595613085	0	18.1428252638324						361	13	4	NaN	NaN	NaN	0.00046223	1	36802	42.072	39.831	1	98166			12286	3231	10337	10603	12286	12286		
LLEVYDQLFK	10	Unmodified	_LLEVYDQLFK_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.350271	1266.68599	0.99274	0.00062974	-1.4025	-0.00088967	-0.40975	-0.00025992	634.349401974752	16.103	0.15076	16.103	16.049	16.2	0	537	73	0.965173861991602	0.0484749534387644	0.965173861991602	390.794515751906	0	19.6272886173155						516	18	2	NaN	NaN	NaN	0.0039092	1	11421	58.916	31.969	1	282650			12287	352	10338	10604	12287	12287		
LLFEGAGSNPGDK	13	Unmodified	_LLFEGAGSNPGDK_			0	0	0	P61421	P61421	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.827692	1303.64083	1.7041	0.0011125	1.4614	0.00095407	3.1656	0.0020666	652.828750985311	8.2987	0.3016	8.2987	8.1124	8.414	0	525	49	0.973257487423603	0.0323300376824983	0.973257487423603	393.947031301341	0	13.0862824396						315	35	2	NaN	NaN	NaN	0.03891	1	12460	44.598	36.415	1	122520			12288	1344	10339	10605	12288	12288		
LLFEVFDENR	10	Unmodified	_LLFEVFDENR_			0	0	0	Q96PU5	Q96PU5	Q96PU5	NEDD4L	E3 ubiquitin-protein ligase NEDD4-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.327328	1280.6401	0.70212	0.00045029	-1.9239	-0.0012339	-1.2218	-0.00078357	641.325886802763	15.81	0.15964	15.81	15.748	15.908	-1.7764E-15	570	40	0.942920803299286	0.0263172834355764	0.942920803299286	381.739488284573	0	10.6544964079536						382	19	3	NaN	NaN	NaN	7.1859E-05	1	11771	100.84	80.602	1	104370			12289	2597	10340	10606	12289	12289		
LLFGHSTEGDILELVDGHFDTK	22	Unmodified	_LLFGHSTEGDILELVDGHFDTK_			0	0	0	Q9UHY7	Q9UHY7	Q9UHY7	ENOPH1	Enolase-phosphatase E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	611.558953	2442.2067	0.28166	0.00017225	-0.041978	-2.5672E-05	0.23968	0.00014658	611.809489689176	17.752	0.10638	17.752	17.716	17.823	0	606	25	0.918606045818476	0.0162233196109728	0.918606045818476	740.000868993485	0	13.0690089236048						274	13	5	NaN	NaN	NaN	0.018589	1	36543	15.141	14.242	1	85414			12290	3227	10341	10607	12290	12290		
LLFGHSTEGDILELVDGHFDTK	22	Unmodified	_LLFGHSTEGDILELVDGHFDTK_			0	0	0	Q9UHY7	Q9UHY7	Q9UHY7	ENOPH1	Enolase-phosphatase E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	815.076178	2442.2067	1.3918	0.0011344	0.21857	0.00017815	1.6104	0.0013126	815.410179360922	17.752	0.097526	17.752	17.716	17.814	0	393	28	1.0618830335572	0.0180741958638628	1.0618830335572	641.566808584953	0	10.9200390171723						266	12	5	NaN	NaN	NaN	1.1796E-06	1	36544	63.025	61.599	1	64672			12291	3227	10341	10607	12291	12291		
LLFPAVDDNLLK	12	Unmodified	_LLFPAVDDNLLK_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.389928	1356.7653	0.18586	0.00012627	-0.31541	-0.00021429	-0.12955	-8.8015E-05	679.389673061907	16.839	0.12411	16.839	16.785	16.91	0	474	58	1.00756305028564	0.0382991413096786	1.00756305028564	407.665461700939	0	15.4960397965501						442	15	3	NaN	NaN	NaN	0.0027328	1	14113	44.57	31.296	1	136850			12292	1534	10342	10608	12292	12292		
LLFQNLWK	8	Unmodified	_LLFQNLWK_			0	0	0	O60573	O60573	O60573	EIF4E2	Eukaryotic translation initiation factor 4E type 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.310752	1060.60695	-0.27666	-0.00014699	-0.50679	-0.00026926	-0.78345	-0.00041626	531.30984806246	16.218	0.16847	16.218	16.138	16.307	0	633	73	0.900343422309015	0.0487713312849145	0.900343422309015	365.307819998415	0	19.7886142872243						663	20	3	NaN	NaN	NaN	0.015912	1	5752	58.687	29.377	1	187670			12293	269	10343	10609	12293	12293		
LLGAALPLLTK	11	Unmodified	_LLGAALPLLTK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.368267	1108.72198	0.23525	0.00013065	-1.8951	-0.0010525	-1.6599	-0.00092185	555.367219778279	15.597	0.24826	15.597	15.491	15.739	1.7764E-15	648	49	0.890187667287968	0.0325006791403109	0.890187667287968	360.986209787824	0	13.179577081914						696	29	4	NaN	NaN	NaN	2.9061E-05	1	6965	102.55	98.653	1	328810			12294	2698	10344	10610	12294	12294		
LLGASELPIVTPALR	15	Unmodified	_LLGASELPIVTPALR_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.469241	1548.92393	1.3301	0.0010315	0.59675	0.00046276	1.9269	0.0014942	775.46965602062	16.236	0.22166	16.236	16.156	16.377	0	396	82	1.05987478976334	0.0542675293893462	1.05987478976334	428.294103827563	0	21.9294421296082						1458	26	4	NaN	NaN	NaN	3.8264E-08	1	20021	138.71	119.9	1	641600			12295	1207	10345	10611	12295	12295		
LLGDLWQR	8	Unmodified	_LLGDLWQR_			0	0	0	Q9H1I8	Q9H1I8	Q9H1I8	ASCC2	Activating signal cointegrator 1 complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.782359	999.550165	-0.29785	-0.00014916	-0.4753	-0.00023802	-0.77315	-0.00038718	500.782336295914	12.706	0.1153	12.706	12.653	12.768	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	347.427353628226	0	6.61604169323607						209	14	3	NaN	NaN	NaN	0.018141	1	4278	53.679	27.456	1	51266			12296	2858	10346	10612	12296	12296		
LLGELLLDR	9	Unmodified	_LLGELLLDR_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.318774	1040.623	-0.28211	-0.00014707	-0.21939	-0.00011437	-0.5015	-0.00026144	521.318611849331	14.755	0.24831	14.755	14.631	14.879	0	645	40	0.892219381832517	0.0264122944165538	0.892219381832517	362.100647264031	0	10.7192346397128						397	29	3	NaN	NaN	NaN	0.00012385	1	5246	129.56	0	1	129650			12297	3371	10347	10613	12297	12297		
LLGELLQDNAK	11	Unmodified	_LLGELLQDNAK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.342978	1212.6714	1.1443	0.00069501	-0.16366	-9.94E-05	0.98068	0.00059561	607.343062900075	11.465	0.23949	11.465	11.394	11.633	0	540	55	0.963152256458504	0.0363964682875382	0.963152256458504	390.163243415765	0	14.7438414027708						902	28	5	NaN	NaN	NaN	6.1054E-17	1	9811	170.95	119.52	1	616190			12298	1002	10348	10614	12298	12298		
LLGFLDVENTPCAR	14	Unmodified	_LLGFLDVENTPCAR_			0	0	0	Q5RI15	Q5RI15	Q5RI15	COX20	Cytochrome c oxidase protein 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.90869	1603.80283	1.3879	0.0011143	-0.95419	-0.00076613	0.43369	0.00034821	803.409697392228	15.358	0.097521	15.358	15.304	15.402	0	390	31	1.06389100039157	0.0200838253150546	1.06389100039157	429.786700716724	0	8.1133885113714						296	12	4	NaN	NaN	NaN	0.0011388	1	21709	65.879	54.523	1	128540			12299	1976	10349	10615	12299	12299		
LLGGFQETCSK	11	Unmodified	_LLGGFQETCSK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.305538	1238.59652	1.8628	0.0011555	-1.8331	-0.0011371	0.029631	1.838E-05	620.304565813405	7.3496	0.26602	7.3496	7.2166	7.4826	0	564	43	0.946969335010767	0.0283436532440857	0.946969335010767	383.517349005347	0	11.4790229750944						366	31	2	NaN	NaN	NaN	0.0042287	1	10569	60.547	49.846	1	166760			12300	2769	10350	10616	12300	12300		
LLGGQLGLEDFIFAHVK	17	Unmodified	_LLGGQLGLEDFIFAHVK_			0	0	0	Q8TF65	Q8TF65	Q8TF65	GIPC2	PDZ domain-containing protein GIPC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.680483	1856.01962	-0.4186	-0.0002594	-0.8871	-0.00054972	-1.3057	-0.00080912	620.014001297609	18.648	0.053206	18.648	18.63	18.683	0	618	25	0.910492137470517	0.0162323175227004	0.910492137470517	551.081156557307	0	9.82471341143764						113	7	3	NaN	NaN	NaN	0.0024665	1	28613	47.57	0	1	25277			12301	2359	10351	10617	12301	12301		
LLGGVTIAQGGVLPNIQAVLLPK	23	Unmodified	_LLGGVTIAQGGVLPNIQAVLLPK_			0	0	0	P16104;Q96QV6;Q8IUE6	P16104	P16104	H2AFX;HIST1H2AA;HIST2H2AB	Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.798139	2270.37259	0.51735	0.00039205	-0.51531	-0.0003905	0.0020377	1.5442E-06	758.132106312851	19.942	0.044334	19.942	19.915	19.96	0	453	49	1.02166545906632	0.0322185054318638	1.02166545906632	617.53239166606	0	19.4740563446545						223	6	5	NaN	NaN	NaN	1.9399E-05	1	35367	87.727	87.647	1	60163			12302	723	10352	10618	12302	12302		
LLGGVTIAQGGVLPNIQAVLLPK	23	Unmodified	_LLGGVTIAQGGVLPNIQAVLLPK_			0	0	0	P16104;Q96QV6;Q8IUE6	P16104	P16104	H2AFX;HIST1H2AA;HIST2H2AB	Histone H2AX;Histone H2A type 1-A;Histone H2A type 2-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1136.19357	2270.37259	0.18366	0.00020868	0.15029	0.00017076	0.33395	0.00037944	1136.69522139198	19.942	0.035461	19.942	19.924	19.96	0	63	64	1.28111162701928	0.0415689526304328	1.28111162701928	516.235558385016	0	16.7505867717246						252	5	5	NaN	NaN	NaN	3.1325E-13	1	35368	119.58	118.77	1	74789			12303	723	10352	10618	12303	12303		
LLGHEVEDVIIK	12	Unmodified	_LLGHEVEDVIIK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	455.597649	1363.77112	-1.2683	-0.00057783	-1.2268	-0.00055895	-2.4951	-0.0011368	455.597198006869	10.498	0.088716	10.498	10.454	10.543	0	846	28	0.755468431110051	0.0184540131906292	0.755468431110051	458.472776142797	0	11.1992272741984						214	11	4	NaN	NaN	NaN	0.015397	1	14313	56.202	48.556	1	71475			12304	2442	10353	10619	12304	12304		
LLGHWEEAAHDLALACK	17	Unmodified	_LLGHWEEAAHDLALACK_			0	0	0	P50502;Q8IZP2	P50502	P50502	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	484.245181	1932.95162	-1.6036	-0.00077652	-0.4541	-0.0002199	-2.0577	-0.00099641	484.495748273679	12.44	0.11528	12.44	12.396	12.511	0	804	46	0.78414869089473	0.0306924975530096	0.78414869089473	632.62561362472	0	24.7617069614602						474	14	5	NaN	NaN	NaN	5.2968E-05	1	30380	82.437	74.062	1	227270			12305	1165	10354	10620	12305	12305		
LLGHWEEAAHDLALACK	17	Unmodified	_LLGHWEEAAHDLALACK_			0	0	0	P50502;Q8IZP2	P50502	P50502	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	484.245181	1932.95162	-0.68914	-0.00033372	-0.53595	-0.00025953	-1.2251	-0.00059325	484.244809229989	12.431	0.15961	12.431	12.405	12.564	0	726	37	0.837263974740672	0.0244704573832687	0.837263974740672	675.477294351975	0	19.7419676989271						439	19	5	NaN	NaN	NaN	0.0012366	1	30381	42.941	39.856	1	150900			12306	1165	10354	10620	12306	12306		
LLGHWEEAAHDLALACK	17	Unmodified	_LLGHWEEAAHDLALACK_			0	0	0	P50502;Q8IZP2	P50502	P50502	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.324482	1932.95162	1.1395	0.00073537	-0.15502	-0.00010004	0.98451	0.00063533	645.324583924366	12.431	0.16847	12.431	12.396	12.564	0	558	76	0.951016745717027	0.0505751639210029	0.951016745717027	575.439125255039	0	30.6019091855104						824	20	6	NaN	NaN	NaN	5.6167E-07	1	30382	166.71	159.14	1	432540			12307	1165	10354	10620	12307	12307		
LLGHWEEAAHDLALACK	17	Unmodified	_LLGHWEEAAHDLALACK_			0	0	0	P50502;Q8IZP2	P50502	P50502	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.483085	1932.95162	1.8372	0.0017775	-0.21045	-0.0002036	1.6268	0.0015739	967.98586408446	12.431	0.10639	12.431	12.378	12.485	0	153	94	1.22165005014568	0.0616081379839206	1.22165005014568	492.797383805278	0	24.8519035512423						659	13	5	NaN	NaN	NaN	0.0015332	1	30384	38.584	33.49	1	158530			12308	1165	10354	10620	12308	12308		
LLGLAELLR	9	Unmodified	_LLGLAELLR_			0	0	0	A2RRP1	A2RRP1	A2RRP1	NBAS	Neuroblastoma-amplified sequence	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.32386	996.633166	-1.3494	-0.0006738	-0.20208	-0.00010091	-1.5515	-0.00077471	499.323689327229	17.317	0.097526	17.317	17.282	17.38	0	672	28	0.873923798053065	0.0183057433537801	0.873923798053065	354.879850540272	0	7.43353079512269						184	12	3	NaN	NaN	NaN	0.00016176	1	4223	98.009	41.918	1	55777			12309	7	10355	10621	12309	12309		
LLGLLFPLLAR	11	Unmodified	_LLGLLFPLLAR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.405184	1224.79581	0.088133	5.4061E-05	-1.0121	-0.00062083	-0.92397	-0.00056677	613.404435481349	20.111	0.026593	20.111	20.102	20.128	0	558	40	0.951016745717027	0.0263027118748081	0.951016745717027	385.204358565163	0	10.6537758687106						95	4	3	NaN	NaN	NaN	0.018059	1	10151	31.952	27.75	1	53057			12310	2356	10356	10622	12310	12310		
LLGLPFIAGPVDIR	14	Unmodified	_LLGLPFIAGPVDIR_			0	0	0	Q8IXT5	Q8IXT5	Q8IXT5	RBM12B	RNA-binding protein 12B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.947944	1479.88134	0.54393	0.00040302	0.34664	0.00025684	0.89057	0.00065987	740.948219422844	19.632	0.062079	19.632	19.605	19.667	0	417	31	1.04580932352505	0.0201004566486325	1.04580932352505	422.784896150697	0	8.12592629039614						122	8	3	NaN	NaN	NaN	0.00054185	1	17906	70.389	53.397	1	25619			12311	2214	10357	10623	12311	12311		
LLGMGDIEGLIDK	13	Unmodified	_LLGMGDIEGLIDK_			0	0	0	P61011	P61011	P61011	SRP54	Signal recognition particle 54 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.370878	1372.7272	0.90257	0.0006204	-0.82507	-0.00056713	0.077499	5.327E-05	687.371125642426	17.796	0.1596	17.796	17.708	17.867	0	483	31	1.00151498427745	0.0201616152840689	1.00151498427745	405.170860700976	0	8.15654198490262						360	19	4	NaN	NaN	NaN	0.00053612	1	14582	77.358	63.364	1	135530			12312	1321	10358	10624	12312	12312		
LLGNTFVALSDLR	13	Unmodified	_LLGNTFVALSDLR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.903734	1417.79291	1.0547	0.00074876	0.14307	0.00010157	1.1978	0.00085033	709.903975465075	16.369	0.19506	16.369	16.315	16.51	0	420	46	1.04379886199097	0.030165256192159	1.04379886199097	422.143280237552	0	12.1997260792898						566	23	4	NaN	NaN	NaN	0.00020742	1	16037	101.48	82.158	1	229350			12313	1081	10359	10625	12313	12313		
LLGNVLVVVLAR	12	Unmodified	_LLGNVLVVVLAR_			0	0	0	CON__Q3SX09;CON__P02070	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.418823	1264.82309	0.3485	0.00022075	-0.82186	-0.00052058	-0.47335	-0.00029983	633.418114833087	18.656	0.14187	18.656	18.63	18.772	0	537	40	0.965173861991602	0.0262808772147128	0.965173861991602	390.800720633001	0	10.6411768478523						305	17	3	NaN	NaN	NaN	3.2399E-07	1	11363	111.39	104.24	1	84626		+	12314	40	10360	10626	12314	12314		
LLGPDAAINLTDPDGALAK	19	Unmodified	_LLGPDAAINLTDPDGALAK_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.004373	1863.99419	1.8168	0.0016951	0.81805	0.00076324	2.6349	0.0024584	933.50669680075	15.163	0.23055	15.163	15.074	15.304	0	183	100	1.20177511391933	0.0657090258017372	1.20177511391933	484.907908154343	0	26.5131353439883						1655	27	5	NaN	NaN	NaN	2.0759E-20	1	28788	204.33	181.37	1	695730			12315	1684	10361	10627	12315	12315		
LLGPGVNYSGCQITWAK	17	Unmodified	_LLGPGVNYSGCQITWAK_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.474728	1862.9349	1.4803	0.0013803	0.56327	0.00052524	2.0436	0.0019056	932.976909119879	13.141	0.10643	13.141	13.105	13.212	0	264	34	1.14797626962532	0.0219602499318536	1.14797626962532	463.202394821472	0	8.86084549694795						297	13	4	NaN	NaN	NaN	8.8709E-07	1	28768	72.031	63.225	1	58603			12316	1020	10362	10628	12316	12316		
LLGPSAAADILQLSSSLPLQSR	22	Unmodified	_LLGPSAAADILQLSSSLPLQSR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.12862	2236.2427	0.40171	0.00044957	-1.3642	-0.0015267	-0.9625	-0.0010772	1119.62848888653	19.889	0.044332	19.889	19.862	19.907	0	63	52	1.28111162701928	0.0336510508969117	1.28111162701928	516.28349073917	0	13.5612554422922						164	6	4	NaN	NaN	NaN	2.0294E-06	1	35055	68.127	63.53	1	29998			12317	2149	10363	10629	12317	12317		
LLGPSAAADILQLSSSLPLQSR	22	Unmodified	_LLGPSAAADILQLSSSLPLQSR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.421509	2236.2427	0.78729	0.00058765	-0.061073	-4.5587E-05	0.72621	0.00054206	746.755647020017	19.889	0.088662	19.889	19.862	19.951	0	435	34	1.03374239103424	0.0221334029246503	1.03374239103424	624.890092522419	0	13.3794882761682						239	11	5	NaN	NaN	NaN	0.00020751	1	35056	88.421	76.742	1	83074			12318	2149	10363	10629	12318	12318		
LLGQFSEK	8	Unmodified	_LLGQFSEK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.255643	920.496732	-0.40812	-0.00018825	-0.96059	-0.00044308	-1.3687	-0.00063133	461.255294319456	6.7289	0.20392	6.7289	6.6845	6.8885	0	732	37	0.833184998970724	0.0244840671338465	0.833184998970724	338.717533796723	0	9.95359115578765						322	24	3	NaN	NaN	NaN	0.013756	1	2715	65.313	41.737	1	111200			12319	1228	10364	10630	12319	12319		
LLGQFTLIGIPPAPR	15	Unmodified	_LLGQFTLIGIPPAPR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.979776	1591.945	1.1038	0.00087974	0.24481	0.00019511	1.3486	0.0010748	796.979936555485	18.195	0.43452	18.195	18.107	18.541	0	375	52	1.07392668217569	0.0341119209023848	1.07392668217569	433.86854109366	0	13.7812847017045						1156	50	3	NaN	NaN	NaN	3.3406E-05	1	21337	78.864	74.618	1	301940			12320	1007	10365	10631	12320	12320		
LLGQFTLIGIPPAPR	15	Unmodified	_LLGQFTLIGIPPAPR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.979776	1591.945	1.8095	0.0014421	-0.043182	-3.4416E-05	1.7663	0.0014077	797.481130906242	17.566	0.63842	17.566	17.45	18.089	0	369	118	1.07793901817685	0.0781490939340346	1.07793901817685	435.489533996832	0	31.5723913187302						3087	73	4	NaN	NaN	NaN	3.6263E-24	1	21338	188.6	186.12	1	1815500			12321	1007	10365	10631	12321	12321		
LLGSLYALGIPK	12	Unmodified	_LLGSLYALGIPK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.884281	1243.75401	0.94411	0.00058807	0.18915	0.00011782	1.1333	0.00070589	622.884372882577	15.642	0.15959	15.642	15.571	15.73	0	441	73	1.02971785871157	0.0483411285821531	1.02971785871157	417.010972099641	0	19.5769946611016						529	19	3	NaN	NaN	NaN	0.0047351	1	10749	43.272	39.069	1	125380			12322	2466	10366	10632	12322	12322		
LLGSTIPLCSAQWER	15	Unmodified	_LLGSTIPLCSAQWER_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.948346	1729.88214	2.2194	0.0019219	1.4758	0.0012779	3.6952	0.0031998	865.949849426002	14.214	0.17734	14.214	14.143	14.32	0	309	73	1.11800162319566	0.0480354266011112	1.11800162319566	451.364140385864	0	19.3930568489741						466	21	3	NaN	NaN	NaN	4.705E-06	1	25323	78.157	52.544	1	122450			12323	1163	10367	10633	12323	12323		
LLGTIYTAAEEIEAVGGK	18	Unmodified	_LLGTIYTAAEEIEAVGGK_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.993474	1833.97239	1.575	0.0014458	-1.5082	-0.0013845	0.066723	6.1251E-05	917.993002793881	17.92	0.27487	17.92	17.814	18.089	0	276	82	1.13998907770044	0.0538876483374044	1.13998907770044	460.033299511899	0	21.7459212132095						1078	32	5	NaN	NaN	NaN	1.8423E-26	1	28088	167.59	155.57	1	450480			12324	2097	10368	10634	12324	12324		
LLGTPTEEQWPSMTK	15	Unmodified	_LLGTPTEEQWPSMTK_			0	0	0	Q00535	Q00535	Q00535	CDK5	Cyclin-dependent-like kinase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.426913	1716.83927	2.2958	0.0019731	1.2219	0.0010502	3.5177	0.0030232	859.426726675286	12.281	0.10643	12.281	12.219	12.325	0	360	55	1.08395544855938	0.0360762165045725	1.08395544855938	437.645309699903	0	14.5657157459082						357	13	4	NaN	NaN	NaN	0.00022617	1	24962	62.705	43.894	1	95279			12325	1501	10369	10635	12325	12325		
LLGTQHGEGNSALSPLNPGELLIALHNIDSVK	32	Unmodified	_LLGTQHGEGNSALSPLNPGELLIALHNIDSVK_			0	0	0	Q92797	Q92797	Q92797	SYMPK	Symplekin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	827.696577	3306.7572	1.197	0.00099078	-0.82486	-0.00068274	0.37216	0.00030804	827.946828091725	19.508	0.06205	19.508	19.481	19.543	0	420	31	1.04379886199097	0.0201004566486325	1.04379886199097	839.608445659521	0	16.1683575048303						95	8	3	NaN	NaN	NaN	0.0099245	1	38550	8.8134	8.7411	1	17703			12326	2433	10370	10636	12326	12326		
LLGWIQNK	8	Unmodified	_LLGWIQNK_			0	0	0	O75369;P21333	O75369;P21333	O75369	FLNB;FLNA	Filamin-B;Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.287277	970.560001	0.14651	7.1246E-05	-1.5537	-0.00075553	-1.4072	-0.00068429	486.286356133945	10.755	0.25715	10.755	10.631	10.888	0	723	58	0.839303037468863	0.0387314421406671	0.839303037468863	340.945813557525	0	15.7336771837858						627	30	3	NaN	NaN	NaN	0.044495	1	3650	51.456	31.109	1	360990			12327	326;792	10371	10637	12327	12327		
LLHAGFK	7	Unmodified	_LLHAGFK_			0	0	0	CON__P00735	CON__P00735	CON__P00735			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	393.237056	784.459559	-0.12768	-5.0208E-05	-1.3499	-0.00053084	-1.4776	-0.00058105	393.236492968511	3.9179	0.10638	3.9179	3.8824	3.9888	0	876	22	0.734948245421186	0.0143751500407492	0.734948245421186	299.541596907087	0	5.85885526744448						117	13	2	NaN	NaN	NaN	0.026217	1	866	60.001	0	1	24452		+	12328	23	10372	10638	12328	12328		
LLHDLQIGEK	10	Unmodified	_LLHDLQIGEK_			0	0	0	P49756	P49756	P49756	RBM25	RNA-binding protein 25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.224034	1164.65027	-1.2561	-0.00048891	-0.82069	-0.00031943	-2.0768	-0.00080835	389.223774101649	7.1989	0.097529	7.1989	7.1723	7.2698	0	900	28	0.718511479433384	0.0185003943645243	0.718511479433384	436.790695094458	0	11.2465845644869						148	12	3	NaN	NaN	NaN	0.029513	1	8473	48.157	36.091	1	41248			12329	1147	10373	10639	12329	12329		
LLHDQIEK	8	Unmodified	_LLHDQIEK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.279649	994.544745	0.96114	0.00047892	0.95246	0.00047459	1.9136	0.00095351	498.280264759326	3.1198	0.1419	3.1198	3.0932	3.2351	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	349.10497944843	0	6.61465597546811						144	17	2	NaN	NaN	NaN	0.0050945	1	4159	91.783	42.724	1	35719			12330	667	10374	10640	12330	12330		
LLHDQVGVIQFGPYK	15	Unmodified	_LLHDQVGVIQFGPYK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.982274	1712.92499	-0.80711	-0.00046165	-0.77107	-0.00044104	-1.5782	-0.00090269	571.981774799763	12.148	0.14189	12.148	12.086	12.227	0	729	37	0.835224628594324	0.0244704573832687	0.835224628594324	505.837826854414	0	14.8200646402374						466	17	4	NaN	NaN	NaN	5.9269E-05	1	24865	90.306	53.792	1	210900			12331	1241	10375	10641	12331	12331		
LLHEVQELTTEVEK	14	Unmodified	_LLHEVQELTTEVEK_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.44616	1666.87777	2.6338	0.0021978	-1.2734	-0.0010626	1.3605	0.0011352	834.445500302601	11.589	0.29265	11.589	11.5	11.793	0	336	61	1.09998710857178	0.0400405396622028	1.09998710857178	444.224669459746	0	16.170185412015						1284	34	5	NaN	NaN	NaN	0.00023231	1	23552	102.57	86.465	1	699620			12332	1684	10376	10642	12332	12332		
LLHGFNAEGIHFS	13	Unmodified	_LLHGFNAEGIHFS_			0	0	0	Q9UNQ2	Q9UNQ2	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.245609	1440.715	-1.4031	-0.00067522	0.16479	7.9302E-05	-1.2383	-0.00059592	481.246065830665	11.713	0.15961	11.713	11.66	11.82	0	750	34	0.820941264895493	0.0224546522756353	0.820941264895493	497.939704338429	0	13.6198086187998						283	19	4	NaN	NaN	NaN	0.020545	1	16692	58.916	56.037	1	127030			12333	3304	10377	10643	12333	12333		
LLHHDDPEVLADTCWAISYLTDGPNER	27	Unmodified	_LLHHDDPEVLADTCWAISYLTDGPNER_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	785.12128	3136.45601	-0.46731	-0.0003669	-0.81937	-0.00064331	-1.2867	-0.0010102	785.371745520022	17.716	0.1064	17.716	17.69	17.796	0	693	34	0.85967808974117	0.0223985529654932	0.85967808974117	691.663111220367	0	18.0209929924021						351	13	6	NaN	NaN	NaN	9.5751E-07	1	38401	60.14	59.652	1	81303			12334	1207	10378	10644	12334	12334		
LLHHDDPEVLADTCWAISYLTDGPNER	27	Unmodified	_LLHHDDPEVLADTCWAISYLTDGPNER_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1046.49261	3136.45601	1.5485	0.0016205	-1.3697	-0.0014334	0.17879	0.0001871	1046.82518461776	17.725	0.070937	17.725	17.69	17.761	0	405	52	1.05384839605172	0.034140156185883	1.05384839605172	635.914569066664	0	20.6008974252392						244	9	4	NaN	NaN	NaN	0.0087695	1	38402	15.507	14.658	1	30809			12335	1207	10378	10644	12335	12335		
LLHIEELR	8	Unmodified	_LLHIEELR_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	341.537953	1021.59203	-1.7647	-0.0006027	-0.17983	-6.1419E-05	-1.9445	-0.00066412	341.537906724522	8.2454	0.12419	8.2454	8.21	8.3342	0	867	28	0.741107305531458	0.0184746054874579	0.741107305531458	451.263203251353	0	11.249261191801						205	15	3	NaN	NaN	NaN	0.001846	1	4779	63.301	37.078	1	72160			12336	3324	10379	10645	12336	12336		
LLHIEELR	8	Unmodified	_LLHIEELR_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.803291	1021.59203	1.2354	0.0006323	0.11827	6.0529E-05	1.3537	0.00069283	511.803257489365	8.2454	0.17745	8.2454	8.2011	8.3785	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	373.723302797355	0	9.87720545097653						305	21	3	NaN	NaN	NaN	0.00067072	1	4781	113.14	56.246	1	102480			12337	3324	10379	10645	12337	12337		
LLHINATALLEYPEYSGPLLPASAVAPGPSALDR	34	Unmodified	_LLHINATALLEYPEYSGPLLPASAVAPGPSALDR_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1172.96275	3515.86642	0.89251	0.0010469	-0.045977	-5.3929E-05	0.84653	0.00099295	1173.63177996037	19.215	0.035453	19.215	19.197	19.233	0	222	37	1.17589687683038	0.0239122235316391	1.17589687683038	709.222827753931	0	14.4222636569172						97	5	3	NaN	NaN	NaN	0.00012758	1	38658	31.386	30.962	1	17391			12338	2466	10380	10646	12338	12338		
LLHLLLDDMPVK	12	Unmodified	_LLHLLLDDMPVK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.607379	1405.80031	-2.7092	-0.0012722	0.62557	0.00029377	-2.0836	-0.00097847	469.607820841853	14.852	0.13299	14.852	14.808	14.941	0	810	28	0.78005493425781	0.0184257549517962	0.78005493425781	473.251790457468	0	11.1787274697068						254	16	4	NaN	NaN	NaN	0.0041119	1	15658	49.16	47.361	1	89683			12339	2422	10381	10647	12339	12339		
LLHLLLDDMPVK	12	Unmodified	_LLHLLLDDMPVK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.607379	1405.80031	-2.2535	-0.0010583	1.1037	0.0005183	-1.1498	-0.00053997	469.608186979851	14.852	0.097519	14.852	14.817	14.914	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	501.771981947826	0	11.1430078801542						211	12	4	NaN	NaN	NaN	0.047532	1	15659	26.947	23.339	1	64903			12340	2422	10381	10647	12340	12340		
LLHLLLDDMPVK	12	Unmodified	_LLHLLLDDMPVK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.90743	1405.80031	0.45383	0.00031946	1.0431	0.00073425	1.4969	0.0010537	703.90824808344	14.843	0.07979	14.843	14.817	14.897	1.7764E-15	399	58	1.0578662689527	0.0381882446994148	1.0578662689527	427.867810886243	0	15.4457336817283						312	10	4	NaN	NaN	NaN	0.00034265	1	15660	56.202	49.512	1	71346			12341	2422	10381	10647	12341	12341		
LLHPSPDLVSQEATLSEAR	19	Unmodified	_LLHPSPDLVSQEATLSEAR_			0	0	0	Q8IY22	Q8IY22	Q8IY22	CMIP	C-Maf-inducing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.363771	2062.06948	0.83373	0.00057391	0.54995	0.00037857	1.3837	0.00095248	688.698809618718	10.968	0.0532	10.968	10.95	11.004	0	585	19	0.932794566565362	0.0121556930353043	0.932794566565362	564.161554388232	0	7.3518595875986						95	7	3	NaN	NaN	NaN	0.048461	1	32741	14.5	10.429	1	18344			12342	2217	10382	10648	12342	12342		
LLHSENYVTK	10	Unmodified	_LLHSENYVTK_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.883789	1202.62954	-0.41298	-0.00016597	-0.41313	-0.00016603	-0.82612	-0.000332	401.883513700118	3.9179	0.097548	3.9179	3.8824	3.98	-4.4409E-16	852	25	0.751366682244005	0.0164069966594707	0.751366682244005	456.595132998857	0	9.97030477778088						147	12	3	NaN	NaN	NaN	0.013711	1	9547	32.14	28.247	1	38974			12343	3371	10383	10649	12343	12343		
LLHSENYVTK	10	Unmodified	_LLHSENYVTK_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.322045	1202.62954	2.4586	0.0014808	-1.8023	-0.0010856	0.65624	0.00039527	602.321061705145	3.9179	0.097458	3.9179	3.8914	3.9888	-4.4409E-16	561	31	0.948993180460448	0.0202370558589571	0.948993180460448	384.463669663878	0	8.1985971226394						139	12	2	NaN	NaN	NaN	0.034901	1	9548	43.272	35.089	1	41928			12344	3371	10383	10649	12344	12344		
LLHSPHQNVCEQAVWALGNIIGDGPQCR	28	Unmodified	_LLHSPHQNVCEQAVWALGNIIGDGPQCR_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	793.140915	3168.53455	-0.48471	-0.00038444	-0.72321	-0.00057361	-1.2079	-0.00095805	793.641684397993	15.925	0.12418	15.925	15.863	15.987	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	729.248069911065	0	14.6968052900291						382	15	5	NaN	NaN	NaN	2.1369E-06	1	38431	66.582	65.363	1	98036			12345	96	10384	10650	12345	12345		
LLHTLEGHAMPIR	13	Unmodified	_LLHTLEGHAMPIR_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.411203	1486.80785	1.6793	0.0012501	-0.79109	-0.0005889	0.88822	0.0006612	744.410636206508	7.1545	0.079792	7.1545	7.128	7.2077	0	378	28	1.07192009927972	0.0180592477799895	1.07192009927972	433.321890861912	0	7.30042043322737						189	10	3	NaN	NaN	NaN	1.0256E-07	1	18144	110.88	104.86	1	47139			12346	2830	10385	10651	12346	12346		
LLHVAVSDVNDDVR	14	Unmodified	_LLHVAVSDVNDDVR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.942366	1550.80527	-1.1357	-0.00058822	-0.34807	-0.00018028	-1.4838	-0.0007685	517.94221267396	8.5027	0.097546	8.5027	8.4672	8.5648	0	777	28	0.802556497112065	0.0183975615701674	0.802556497112065	486.46012713398	0	11.1514643175695						232	12	4	NaN	NaN	NaN	8.5082E-05	1	20087	92.428	91.054	1	78802			12347	2641	10386	10652	12347	12347		
LLHVAVSDVNDDVRR	15	Unmodified	_LLHVAVSDVNDDVRR_			0	0	1	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.97607	1706.90638	0.24481	0.00013954	0.080228	4.5728E-05	0.32504	0.00018526	569.976699424767	7.2255	0.070942	7.2255	7.2077	7.2787	0	699	22	0.85560534332665	0.0142556031742478	0.85560534332665	518.195662002704	0	8.63387750175264						106	9	3	NaN	NaN	NaN	0.052843	1	24684	51.454	46.303	1	25139			12348	2641	10387	10653	12348	12348		
LLIDEAILK	9	Unmodified	_LLIDEAILK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.323525	1026.6325	-0.055525	-2.8558E-05	-1.2297	-0.00063244	-1.2852	-0.000661	514.322689909993	14.081	0.16848	14.081	14.036	14.205	0	675	76	0.871889544407995	0.0508634397586644	0.871889544407995	353.91289334951	0	20.6462243367307						529	20	3	NaN	NaN	NaN	0.0002714	1	4910	109.36	71.035	1	252370			12349	1139	10388	10654	12349	12349		
LLIEMEQR	8	Unmodified	_LLIEMEQR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.281334	1030.54812	0.67707	0.00034956	0.21239	0.00010965	0.88946	0.00045921	516.281865985811	9.2036	0.32811	9.2036	9.0972	9.4253	0	663	40	0.880024865079826	0.026423290319909	0.880024865079826	357.197177165481	0	10.725065947812						521	38	4	NaN	NaN	NaN	0.00010439	1	5014	100.75	80.407	1	271040			12350	668	10389	10655	12350	12350		
LLIHQSLAGGIIGVK	15	Unmodified	_LLIHQSLAGGIIGVK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.983726	1517.92935	-0.8578	-0.00043489	-0.3832	-0.00019428	-1.241	-0.00062917	506.983487663541	12.094	0.21284	12.094	12.032	12.245	0	714	94	0.845418525735192	0.0632725582017283	0.845418525735192	512.53850928792	0	38.3592524558715						1224	25	5	NaN	NaN	NaN	2.0992E-08	1	19075	135.5	124.15	1	577070			12351	1360	10390	10656	12351	12351		
LLIHQSLAGGIIGVK	15	Unmodified	_LLIHQSLAGGIIGVK_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.971951	1517.92935	2.2885	0.0017392	1.47	0.0011171	3.7585	0.0028564	759.973172699218	12.086	0.36358	12.086	12.032	12.396	0	342	61	1.09598084995137	0.0400846886199586	1.09598084995137	442.964623046207	0	16.201103317866						1123	42	5	NaN	NaN	NaN	3.9081E-17	1	19076	202.72	169.3	1	836210			12352	1360	10390	10656	12352	12352		
LLILADMADVYK	12	Unmodified	_LLILADMADVYK_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.878339	1363.74212	0.063771	4.3548E-05	-0.35922	-0.0002453	-0.29545	-0.00020176	682.87814360476	16.998	0.11526	16.998	16.963	17.078	0	444	34	1.02770517576159	0.022139515615524	1.02770517576159	415.793620255704	0	8.95730562188191						281	14	4	NaN	NaN	NaN	0.00041012	1	14311	68.49	54.496	1	76575			12353	959	10391	10657	12353	12353		
LLILALER	8	Unmodified	_LLILALER_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.813128	939.611703	-0.6979	-0.00032858	-1.9743	-0.00092953	-2.6722	-0.0012581	470.812256057941	14.276	0.14186	14.276	14.223	14.365	0	714	46	0.845418525735192	0.0305816988053002	0.845418525735192	343.588050598263	0	12.4287627448887						266	17	2	NaN	NaN	NaN	0.019378	1	3063	42.835	23.88	1	70907			12354	2064	10392	10658	12354	12354		
LLILEYAR	8	Unmodified	_LLILEYAR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.80276	989.590967	0.61355	0.0003042	-4.5653	-0.0022635	-3.9518	-0.0019593	495.800408610096	12.946	0.18624	12.946	12.839	13.026	0	666	40	0.877991458330206	0.0264379622091019	0.877991458330206	356.566195464256	0	10.7368739311605						240	22	2	NaN	NaN	NaN	0.040654	1	4050	36.57	22.034	1	78446			12355	240	10393	10659	12355	12355		
LLILMEAR	8	Unmodified	_LLILMEAR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.791338	957.568123	0.086578	4.1539E-05	-2.1213	-0.0010178	-2.0347	-0.00097625	479.790526718193	12.724	0.17736	12.724	12.662	12.839	0	696	31	0.857641857947968	0.0203637344294858	0.857641857947968	348.461526385701	0	8.27382422680466						347	21	3	NaN	NaN	NaN	0.0088013	1	3396	84.699	35.641	1	106640			12356	1036	10394	10660	12356	12356		
LLINLLK	7	Unmodified	_LLINLLK_			0	0	0	Q14997	Q14997	Q14997	PSME4	Proteasome activator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	413.791664	825.568775	-3.0123	-0.0012464	0.056479	2.3371E-05	-2.9558	-0.0012231	413.791750568309	14.365	0.05318	14.365	14.347	14.4	0	792	19	0.792332785124922	0.0122744327751768	0.792332785124922	322.653730883548	0	4.99839411386426						52	7	2	NaN	NaN	NaN	0.019864	1	1252	54.056	16.448	1	8641.8			12357	1783	10395	10661	12357	12357		
LLITGTEQFNQK	12	Unmodified	_LLITGTEQFNQK_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.380091	1390.74563	1.4322	0.00099735	-0.98542	-0.00068623	0.44677	0.00031112	696.379816421519	9.6026	0.20394	9.6026	9.5583	9.7622	0	468	31	1.01159370163332	0.0201476911078267	1.01159370163332	409.195416642927	0	8.14985586006395						227	24	3	NaN	NaN	NaN	0.00056804	1	15177	87.895	64.842	1	63371			12358	2408	10396	10662	12358	12358		
LLIVSNPVDILTYVAWK	17	Unmodified	_LLIVSNPVDILTYVAWK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.563869	1943.11319	1.9747	0.0019205	0.38745	0.00037682	2.3621	0.0022973	973.065421906787	20.137	0.10642	20.137	20.111	20.217	0	198	43	1.1918274123006	0.0278631320749874	1.1918274123006	480.749404701165	0	11.2391979072734						302	13	4	NaN	NaN	NaN	1.1334E-44	1	30593	206.7	0	1	520740			12359	471	10397	10663	12359	12359		
LLLAGYDDFNCNVWDTLK	18	Unmodified	_LLLAGYDDFNCNVWDTLK_			0	0	0	Q9HAV0	Q9HAV0	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1079.0197	2156.02484	0.39147	0.0004224	1.2532	0.0013523	1.6447	0.0017747	1079.52291649528	18.763	0.053186	18.763	18.745	18.798	0	114	46	1.24744674793813	0.0297450283296996	1.24744674793813	502.832134936695	0	11.9898954592626						217	7	4	NaN	NaN	NaN	0.0028051	1	34123	30.875	28.486	1	38201			12360	2946	10398	10664	12360	12360		
LLLDDLVPTSR	11	Unmodified	_LLLDDLVPTSR_			0	0	0	Q6IN84	Q6IN84	Q6IN84	MRM1	rRNA methyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.358628	1240.7027	1.0049	0.00062441	-1.7662	-0.0010975	-0.7613	-0.00047304	621.357772681532	15.508	0.13314	15.508	15.446	15.579	0	552	40	0.955063035883597	0.0263027118748081	0.955063035883597	386.788014971662	0	10.6522536546672						271	16	3	NaN	NaN	NaN	0.0018913	1	10652	83.358	55.622	1	58401			12361	2038	10399	10665	12361	12361		
LLLDIPLQTPHK	12	Unmodified	_LLLDIPLQTPHK_			0	0	0	P49792;A6NKT7;Q99666;O14715;P0DJD0;P0DJD1	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD5;RGPD8;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.281772	1386.82349	-1.2863	-0.00059592	-1.1392	-0.00052778	-2.4255	-0.0011237	463.281277571418	13.496	0.097534	13.496	13.469	13.567	0	756	31	0.816857749704129	0.0204232585244036	0.816857749704129	495.645669982549	0	12.3922429067012						184	12	3	NaN	NaN	NaN	0.0090621	1	15060	46.033	30.153	1	33887			12362	1151;19	10400	10666	12362	12362		
LLLDNTQIMNALQK	14	Unmodified	_LLLDNTQIMNALQK_			0	0	0	O43929;CON__Q2YDI2	O43929	O43929	ORC4	Origin recognition complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.947815	1613.88108	2.139	0.0017282	-1.9346	-0.001563	0.20448	0.00016521	807.949391729815	15.81	0.13303	15.81	15.748	15.881	0	345	58	1.09397730668811	0.0380883241812764	1.09397730668811	441.917227005138	0	15.3859559065434						277	16	4	NaN	NaN	NaN	1.2361E-05	1	22020	85.821	68.351	1	71649		+	12363	245	10401	10667	12363	12363		
LLLDPEFTLLQR	12	Unmodified	_LLLDPEFTLLQR_			0	0	0	Q9BZH6	Q9BZH6	Q9BZH6	WDR11	WD repeat-containing protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.421759	1456.82897	0.29312	0.00021381	0.57168	0.000417	0.8648	0.0006308	729.422100940898	18.151	0.088645	18.151	18.107	18.195	0	432	31	1.035754240522	0.0201143318791703	1.035754240522	418.781343411678	0	8.13272743343254						148	11	2	NaN	NaN	NaN	0.00169	1	17164	34.953	17.483	1	37817			12364	2812	10402	10668	12364	12364		
LLLDTFEYQGLVK	13	Unmodified	_LLLDTFEYQGLVK_			0	0	0	Q7Z7K6	Q7Z7K6	Q7Z7K6	CENPV	Centromere protein V	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.926874	1537.8392	1.0694	0.00082338	-1.8754	-0.0014439	-0.80596	-0.00062053	769.924711748874	16.679	0.15076	16.679	16.626	16.777	0	363	67	1.08195024817156	0.0441478922926009	1.08195024817156	437.242697760585	0	17.8412487626694						580	18	4	NaN	NaN	NaN	3.7973E-11	1	19672	106.35	65.967	1	161190			12365	2155	10403	10669	12365	12365		
LLLEAQAATGFLLDPVK	17	Unmodified	_LLLEAQAATGFLLDPVK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.019295	1798.02404	1.2064	0.0010858	-2.2647	-0.0020383	-1.0583	-0.00095253	900.018028725942	18.745	0.12414	18.745	18.692	18.816	0	264	34	1.14797626962532	0.0219572303185152	1.14797626962532	463.325983087294	0	8.86199095955232						207	15	3	NaN	NaN	NaN	0.0026734	1	27178	62.398	54.433	1	102200			12366	1816	10404	10670	12366	12366		
LLLEDLVK	8	Unmodified	_LLLEDLVK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.797143	941.579734	-1.3792	-0.0006507	-1.0274	-0.00048473	-2.4066	-0.0011354	471.796482374409	14.87	0.15961	14.87	14.826	14.985	-1.7764E-15	702	52	0.853568545818287	0.0346448160235548	0.853568545818287	346.889858424118	0	14.0796370536585						324	19	3	NaN	NaN	NaN	0.016891	1	3096	67.903	23.483	1	102700			12367	1625	10405	10671	12367	12367		
LLLEEIYR	8	Unmodified	_LLLEEIYR_			0	0	0	Q9Y2P8	Q9Y2P8	Q9Y2P8	RCL1	RNA 3-terminal phosphate cyclase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.8055	1047.59645	0.17808	9.3458E-05	-1.1243	-0.00059006	-0.94626	-0.0004966	524.804835288622	13.256	0.11526	13.256	13.212	13.327	0	621	34	0.908462957275599	0.0223240803246195	0.908462957275599	368.660939461525	0	9.0592757351053						258	14	3	NaN	NaN	NaN	0.044329	1	5416	51.43	34.883	1	87749			12368	3344	10406	10672	12368	12368		
LLLEGISSTHAHHLR	15	Unmodified	_LLLEGISSTHAHHLR_			0	0	0	Q9Y371	Q9Y371	Q9Y371	SH3GLB1	Endophilin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.981156	1682.92164	0.86158	0.00048419	1.0141	0.00056993	1.8757	0.0010541	562.315774824124	6.4717	0.11526	6.4717	6.4274	6.5427	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	544.123740189748	0	9.84038142111012						183	14	3	NaN	NaN	NaN	2.4804E-06	1	23994	88.24	68.917	1	48797			12369	3370	10407	10673	12369	12369		
LLLEGISSTHVNHLR	15	Unmodified	_LLLEGISSTHVNHLR_			0	0	0	Q9NR46	Q9NR46	Q9NR46	SH3GLB2	Endophilin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.652927	1687.93695	0.40864	0.00023033	-0.11894	-6.7039E-05	0.2897	0.00016329	563.653136902697	8.9819	0.079838	8.9819	8.9464	9.0262	0	648	22	0.890187667287968	0.0142239758453706	0.890187667287968	539.189120179822	0	8.61550131882848						115	10	2	NaN	NaN	NaN	2.3243E-06	1	24159	112.93	92.59	1	54946			12370	3014	10408	10674	12370	12370		
LLLEHLECLVSR	12	Unmodified	_LLLEHLECLVSR_			0	0	0	Q13136	Q13136	Q13136	PPFIA1	Liprin-alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.609671	1480.80718	-2.113	-0.0010451	-0.35851	-0.00017732	-2.4715	-0.0012224	494.609569334926	15.154	0.088691	15.154	15.118	15.207	0	780	28	0.800512323802183	0.0183975615701674	0.800512323802183	485.423715426763	0	11.156121432042						183	11	3	NaN	NaN	NaN	0.02219	1	17940	39.293	34.142	1	41826			12371	1632	10409	10675	12371	12371		
LLLEQILNK	9	Unmodified	_LLLEQILNK_			0	0	0	O43913	O43913	O43913	ORC5	Origin recognition complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.342249	1082.66995	-0.022554	-1.2232E-05	-0.91753	-0.00049761	-0.94008	-0.00050984	542.341678788984	15.074	0.11528	15.074	15.03	15.145	0	624	31	0.906433495720521	0.0202988394656143	0.906433495720521	367.682738836884	0	8.23395530412802						216	14	3	NaN	NaN	NaN	9.8364E-05	1	6288	125.5	74.068	1	69728			12372	243	10410	10676	12372	12372		
LLLETHLPSK	10	Unmodified	_LLLETHLPSK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	384.23253	1149.67576	-1.5575	-0.00059843	-0.088055	-3.3833E-05	-1.6455	-0.00063226	384.232462593076	8.281	0.088731	8.281	8.2454	8.3342	0	852	25	0.751366682244005	0.0164115712895311	0.751366682244005	456.833219765031	0	9.97828507807731						141	11	3	NaN	NaN	NaN	0.067436	1	8067	12.596	7.6888	1	34793			12373	92	10411	10677	12373	12373		
LLLETHLPSK	10	Unmodified	_LLLETHLPSK_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.845156	1149.67576	1.4869	0.00085624	0.0020387	1.174E-06	1.489	0.00085741	575.845095022945	8.2898	0.12426	8.2898	8.2454	8.3697	0	522	37	0.975277694896658	0.0242441707123356	0.975277694896658	395.318630441492	0	9.82712145714123						292	15	4	NaN	NaN	NaN	0.00060139	1	8068	102.55	63.222	1	122930			12374	92	10411	10677	12374	12374		
LLLGAGAVAYGVR	13	Unmodified	_LLLGAGAVAYGVR_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.377155	1258.73976	1.7034	0.0010738	-0.062746	-3.9554E-05	1.6406	0.0010342	630.377069061248	12.502	0.20392	12.502	12.449	12.653	0	387	91	1.06589869032374	0.0603014273544451	1.06589869032374	431.606916302506	0	24.4174360521888						904	24	4	NaN	NaN	NaN	1.6435E-07	1	11181	106.93	61.437	1	347410			12375	2660	10412	10678	12375	12375		
LLLGDLAPVR	10	Unmodified	_LLLGDLAPVR_			0	0	0	Q9NUQ8	Q9NUQ8	Q9NUQ8	ABCF3	ATP-binding cassette sub-family F member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.834591	1065.65463	-0.18596	-9.9274E-05	-2.2315	-0.0011912	-2.4174	-0.0012905	533.833491421896	14.028	0.10637	14.028	13.974	14.081	0	672	61	0.873923798053065	0.0406653325678452	0.873923798053065	354.566726448322	0	16.4986625614671						372	13	3	NaN	NaN	NaN	0.0089179	1	5868	49.96	39.258	1	104070			12376	3056	10413	10679	12376	12376		
LLLGIDILQPAIIK	14	Unmodified	_LLLGIDILQPAIIK_			0	0	0	Q9BXW9	Q9BXW9	Q9BXW9	FANCD2	Fanconi anemia group D2 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.494727	1518.9749	1.0668	0.00081132	-0.38858	-0.00029551	0.67825	0.00051581	760.494573690398	19.765	0.035468	19.765	19.747	19.782	0	387	31	1.06589869032374	0.0200755173877298	1.06589869032374	430.80358809708	0	8.11390895030803						93	5	3	NaN	NaN	NaN	0.018123	1	19112	37.749	34.647	1	20104			12377	2791	10414	10680	12377	12377		
LLLHLEELQMEHDIR	15	Unmodified	_LLLHLEELQMEHDIR_			0	0	0	Q9HCE1	Q9HCE1	Q9HCE1	MOV10	Putative helicase MOV-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.336499	1887.98767	0.38228	0.00024096	-0.27683	-0.0001745	0.10545	6.6469E-05	630.336170182127	13.079	0.079813	13.079	13.043	13.123	0	552	25	0.955063035883597	0.0161829214477363	0.955063035883597	577.985434503574	0	9.79358694984296						148	10	3	NaN	NaN	NaN	0.0032734	1	29334	49.097	41.521	1	36200			12378	2962	10415	10681	12378	12378		
LLLIGDSGVGK	11	Unmodified	_LLLIGDSGVGK_			0	0	0	P62820;Q92930;P59190;P61026;P51153;P61006;Q9H0U4;Q92928	P62820;P61026;P51153;P61006;Q9H0U4	P62820	RAB1A;RAB8B;RAB15;RAB10;RAB13;RAB8A;RAB1B;RAB1C	Ras-related protein Rab-1A;Ras-related protein Rab-8B;Ras-related protein Rab-15;Ras-related protein Rab-10;Ras-related protein Rab-13;Ras-related protein Rab-8A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.324057	1070.63356	0.886	0.00047518	-1.1673	-0.00062604	-0.28128	-0.00015086	536.323623365663	10.924	0.13303	10.924	10.862	10.995	0	633	34	0.900343422309015	0.0223333690758126	0.900343422309015	365.263966112968	0	9.06051486928749						209	16	2	NaN	NaN	NaN	0.00083637	1	5984	55.235	0	1	67718			12379	1398;1325;2850;1319;1182	10416	10682	12379	12379		
LLLIGDSGVGK	11	Unmodified	_LLLIGDSGVGK_			0	0	0	P62820;Q92930;P59190;P61026;P51153;P61006;Q9H0U4;Q92928	P62820;P61026;P51153;P61006;Q9H0U4	P62820	RAB1A;RAB8B;RAB15;RAB10;RAB13;RAB8A;RAB1B;RAB1C	Ras-related protein Rab-1A;Ras-related protein Rab-8B;Ras-related protein Rab-15;Ras-related protein Rab-10;Ras-related protein Rab-13;Ras-related protein Rab-8A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.324057	1070.63356	0.59565	0.00031946	0.06207	3.329E-05	0.65772	0.00035275	536.324091105526	11.58	0.22174	11.58	11.5	11.722	0	633	61	0.900343422309015	0.0406258559608167	0.900343422309015	365.263960398655	0	16.4816676338644						882	26	5	NaN	NaN	NaN	0.00019247	1	5985	81.163	0	1	1010300			12380	1398;1325;2850;1319;1182	10416	10682	12380	12380		
LLLLAGVDR	9	Unmodified	_LLLLAGVDR_			0	0	0	Q9Y570	Q9Y570	Q9Y570	PPME1	Protein phosphatase methylesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.30821	968.601866	0.63073	0.0003061	-2.1464	-0.0010417	-1.5157	-0.00073557	485.307263526981	12.786	0.1685	12.786	12.706	12.875	0	663	52	0.880024865079826	0.0345775238845497	0.880024865079826	357.498133490336	0	14.0466488390902						511	20	3	NaN	NaN	NaN	0.022642	1	3608	39.324	8.7625	1	182360			12381	3424	10417	10683	12381	12381		
LLLLAGVDRLDK	12	Unmodified	_LLLLAGVDRLDK_			0	0	1	Q9Y570	Q9Y570	Q9Y570	PPME1	Protein phosphatase methylesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.411195	1324.80784	0.79002	0.00052411	0.93523	0.00062044	1.7252	0.0011445	663.411690289341	13.096	0.053204	13.096	13.07	13.123	0	396	31	1.05987478976334	0.0200865957702232	1.05987478976334	428.935376892693	0	8.12912205329059						95	7	2	NaN	NaN	NaN	0.050661	1	13148	60.547	56.94	1	16776			12382	3424	10418	10684	12382	12382		
LLLLDTVTMQVTAR	14	Unmodified	_LLLLDTVTMQVTAR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.452733	1572.89091	0.92735	0.00073024	-1.4747	-0.0011613	-0.54734	-0.00043101	787.452054743857	17.557	0.12414	17.557	17.513	17.637	0	372	22	1.07593298845566	0.0140422088488203	1.07593298845566	434.72451152089	0	5.67367340529245						143	15	3	NaN	NaN	NaN	0.0002686	1	20764	71.896	59.3	1	26730			12383	3452	10419	10685	12383	12383		
LLLLDYPPDR	10	Unmodified	_LLLLDYPPDR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.842613	1213.67067	0.50098	0.00030452	-0.080125	-4.8703E-05	0.42085	0.00025581	607.842682965667	13.797	0.19506	13.797	13.753	13.948	0	573	22	0.940896116921038	0.0141767318354546	0.940896116921038	381.143974657536	0	5.74279755463454						99	23	2	NaN	NaN	NaN	0.067171	1	9839	23.053	12.351	1	15530			12384	268	10420	10686	12384	12384		
LLLLGAGESGK	11	Unmodified	_LLLLGAGESGK_			0	0	0	P04899;P09471;P19087;A8MTJ3;P11488;P08754;P63092;Q5JWF2;P38405;P63096	P04899;P08754;P63092;P63096	P04899	GNAI2;GNAO1;GNAT2;GNAT3;GNAT1;GNAI3;GNAS;GNAL;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(t) subunit alpha-2;Guanine nucleotide-binding protein G(t) subunit alpha-3;Guanine nucleotide-binding protein G(t) subunit alpha-1;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.316232	1056.61791	0.83672	0.00044289	-0.27822	-0.00014727	0.5585	0.00029563	529.316372074751	10.392	0.23939	10.392	10.232	10.472	0	630	52	0.902373728295776	0.0345152137235557	0.902373728295776	366.149318536164	0	14.0049755303466						600	22	4	NaN	NaN	NaN	4.6225E-05	1	5642	78.816	0	1	264410			12385	520;590;1424;1425	10421	10687	12385	12385		
LLLNLVDCIR	10	Unmodified	_LLLNLVDCIR_			0	0	0	Q9Y4A5	Q9Y4A5	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.857741	1227.70093	-0.24767	-0.00015228	0.28418	0.00017473	0.03651	2.2448E-05	614.857849852105	16.333	0.062043	16.333	16.298	16.36	0	540	25	0.963152256458504	0.0161739645709869	0.963152256458504	390.109490446911	0	6.55100689946408						102	8	2	NaN	NaN	NaN	0.024031	1	10243	39.01	23.428	1	22229			12386	3407	10422	10688	12386	12386		
LLLNNDNLLR	10	Unmodified	_LLLNNDNLLR_			0	0	0	P47755;P52907	P47755;P52907	P52907	CAPZA2;CAPZA1	F-actin-capping protein subunit alpha-2;F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.351137	1196.68772	0.80087	0.00048001	-0.14422	-8.644E-05	0.65665	0.00039357	599.35074804987	12.334	0.20396	12.334	12.245	12.449	0	576	46	0.938871150116794	0.0303703038284173	0.938871150116794	380.384368358125	0	12.3045519474954						737	24	5	NaN	NaN	NaN	9.4892E-06	1	9367	146.27	117.16	1	626790			12387	1226;1099	10423	10689	12387	12387		
LLLPGELAK	9	Unmodified	_LLLPGELAK_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;Q96A08;A0A2R8Y619;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BA;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-A;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.305136	952.595718	0.44679	0.00021325	-0.31801	-0.00015179	0.12878	6.1466E-05	477.304948473674	11.314	0.28382	11.314	11.225	11.509	0	708	124	0.849494101904619	0.0834740790206658	0.849494101904619	345.176565766732	0	33.9181824362205						2035	33	4	NaN	NaN	NaN	0.010244	1	3303	51.864	13.542	1	2244700			12388	283;550	10424	10690	12388	12388		
LLLPLFR	7	Unmodified	_LLLPLFR_			0	0	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.291831	870.569109	-3.2299	-0.0014092	0.80847	0.00035273	-2.4214	-0.0010564	436.292100105665	16.75	0.20397	16.75	16.688	16.892	0	750	58	0.820941264895493	0.0387907136666801	0.820941264895493	334.021313272546	0	15.7830111309769						722	24	3	NaN	NaN	NaN	0.016483	1	1875	52.274	22.963	1	386590			12389	2760	10425	10691	12389	12389		
LLLPWLEAR	9	Unmodified	_LLLPWLEAR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.837134	1109.65972	-0.51331	-0.00028532	-0.97698	-0.00054304	-1.4903	-0.00082836	555.836561937412	17.752	0.11526	17.752	17.725	17.841	0	675	25	0.871889544407995	0.0162751600009597	0.871889544407995	353.562337909634	0	6.59978509514042						215	14	3	NaN	NaN	NaN	0.011783	1	6991	49.96	26.385	1	56604			12390	1503	10426	10692	12390	12390		
LLLPWLEAR	9	Unmodified	_LLLPWLEAR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.837134	1109.65972	0.57636	0.00032036	-0.17629	-9.7987E-05	0.40007	0.00022237	555.837002443939	17.761	0.34579	17.761	17.681	18.027	0	615	52	0.912521036363781	0.0344912931175532	0.912521036363781	370.038922823289	0	13.9866594230642						1116	40	5	NaN	NaN	NaN	2.4074E-05	1	6992	121.31	67.435	1	1193400			12391	1503	10426	10692	12391	12391		
LLLQGEADQSLLTFIDK	17	Unmodified	_LLLQGEADQSLLTFIDK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.522399	1903.03024	1.2999	0.0012381	0.59074	0.00056269	1.8906	0.0018008	952.522722628147	18.851	0.15072	18.851	18.816	18.967	0	198	58	1.1918274123006	0.0378220473806725	1.1918274123006	480.821202965644	0	15.2586206127735						586	18	5	NaN	NaN	NaN	8.8165E-19	1	29673	141.87	119.73	1	255360			12392	1465	10427	10693	12392	12392		
LLLQGLMDSVEAK	13	Unmodified	_LLLQGLMDSVEAK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.891977	1415.7694	0.54781	0.00038834	-0.1348	-9.556E-05	0.41301	0.00029278	708.891748201273	16.989	0.15066	16.989	16.927	17.078	0	438	58	1.03173026378327	0.0382093306970261	1.03173026378327	417.268142915103	0	15.4532022774185						411	18	2	NaN	NaN	NaN	0.00037496	1	15974	63.212	44.704	1	187810			12393	2013	10428	10694	12393	12393		
LLLQLEATK	9	Unmodified	_LLLQLEATK_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.82115	1027.62775	0.14708	7.5722E-05	-0.45313	-0.00023328	-0.30605	-0.00015756	514.820846738269	11.279	0.12416	11.279	11.199	11.323	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	353.082517280098	0	7.43357251409503						174	15	3	NaN	NaN	NaN	0.0021273	1	4940	65.156	34.594	1	44418			12394	1684	10429	10695	12394	12394		
LLLQQLEATLETGK	14	Unmodified	_LLLQQLEATLETGK_			0	0	0	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.948338	1555.88212	1.0574	0.00082366	0.017215	1.341E-05	1.0746	0.00083707	778.948312592615	18.417	0.070921	18.417	18.381	18.452	0	402	34	1.05585747106793	0.0220967798859319	1.05585747106793	426.653807026147	0	8.92892792794862						176	9	3	NaN	NaN	NaN	7.8273E-07	1	20244	130.99	113.52	1	48802			12395	1785	10430	10696	12395	12395		
LLLQVQHASK	10	Unmodified	_LLLQVQHASK_			0	0	0	P05141;P12236;P12235	P05141;P12236	P12236	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	379.564391	1135.67134	-0.68505	-0.00026002	0.15753	5.9791E-05	-0.52752	-0.00020023	379.564548156944	5.3366	0.17736	5.3366	5.2923	5.4697	0	888	37	0.726732155490709	0.024655151380962	0.726732155490709	441.919812835515	0	14.9925936280458						526	21	4	NaN	NaN	NaN	0.0054627	1	7697	65.156	45.669	1	365140			12396	665;525	10431	10697	12396	12396		
LLLQVQHASK	10	Unmodified	_LLLQVQHASK_			0	0	0	P05141;P12236;P12235	P05141;P12236	P12236	SLC25A5;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.842948	1135.67134	2.0524	0.0011675	0.55982	0.00031845	2.6122	0.0014859	568.843355643883	5.3366	0.38127	5.3366	5.2835	5.6647	0	546	49	0.959108205975751	0.0323613705025652	0.959108205975751	388.821308989878	0	13.1192605392346						951	44	5	NaN	NaN	NaN	1.3863E-10	1	7699	183.27	112.6	1	992140			12397	665;525	10431	10697	12397	12397		
LLLSDQLEQVK	11	Unmodified	_LLLSDQLEQVK_			0	0	0		REV__Q8N6Y0	REV__Q8N6Y0			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.371735	1284.72892	0.48192	0.00031006	0.92594	0.00059572	1.4079	0.00090578	643.372375991876	17.38	0.12414	17.38	17.326	17.45	0	525	58	0.973257487423603	0.0383786491892638	0.973257487423603	394.007837952561	0	15.5369866515295						523	15	4	NaN	NaN	NaN	0.014946	1	11907	31.952	16.371	1	234940	+		12398	3501	10432	10698	12398	12398		
LLLSEIFPSK	10	Unmodified	_LLLSEIFPSK_			0	0	0	Q9BZG8	Q9BZG8	Q9BZG8	DPH1	Diphthamide biosynthesis protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.842082	1145.66961	-0.92418	-0.00053033	-2.7832	-0.0015971	-3.7073	-0.0021274	573.840543595696	16.28	0.15073	16.28	16.227	16.377	0	624	28	0.906433495720521	0.0182626235094615	0.906433495720521	367.428592288942	0	7.40287078893795						122	18	2	NaN	NaN	NaN	0.03632	1	7954	30.918	14.461	1	26083			12399	2811	10433	10699	12399	12399		
LLLSEIFPSK	10	Unmodified	_LLLSEIFPSK_			0	0	0	Q9BZG8	Q9BZG8	Q9BZG8	DPH1	Diphthamide biosynthesis protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.842082	1145.66961	-1.0238	-0.00058752	-2.574	-0.0014771	-3.5978	-0.0020646	573.841046401874	16.342	0.12413	16.342	16.28	16.404	0	630	16	0.902373728295776	0.0101529381984917	0.902373728295776	365.782938787404	0	4.11555817187303						107	15	2	NaN	NaN	NaN	0.018488	1	7955	36.211	24.144	1	21792			12400	2811	10433	10699	12400	12400		
LLLSIPHSDLLDYPK	15	Unmodified	_LLLSIPHSDLLDYPK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.325817	1722.95562	-1.0373	-0.00059679	-1.0248	-0.00058957	-2.0621	-0.0011864	575.325291040254	15.739	0.27489	15.739	15.615	15.89	0	720	67	0.841341816837976	0.0448064593594814	0.841341816837976	509.518802070269	0	27.1349088336706						765	32	3	NaN	NaN	NaN	0.0090405	1	25139	40.861	18.857	1	158180			12401	3235	10434	10700	12401	12401		
LLLSSETPIEGK	12	Unmodified	_LLLSSETPIEGK_			0	0	0	Q9HDC9	Q9HDC9	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.863743	1285.71293	1.5338	0.00098753	-1.9321	-0.001244	-0.39838	-0.0002565	643.863168282566	9.9218	0.20392	9.9218	9.8154	10.019	0	540	76	0.963152256458504	0.050498238560425	0.963152256458504	389.913733280925	0	20.4432441383731						560	24	3	NaN	NaN	NaN	0.0014414	1	11941	74.424	55.168	1	183450			12402	2973	10435	10701	12402	12402		
LLLTLPLLR	9	Unmodified	_LLLTLPLLR_			0	0	0	P11474;O95718	P11474	P11474	ESRRA;ESRRB	Steroid hormone receptor ERR1;Steroid hormone receptor ERR2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.365527	1050.7165	-0.57932	-0.00030494	0.059662	3.1404E-05	-0.51966	-0.00027353	526.365385342209	18.648	0.10641	18.648	18.603	18.71	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	365.351891879449	0	7.4159610723903						142	13	2	NaN	NaN	NaN	0.0086217	1	5494	65.313	65.313	1	35908			12403	448	10436	10702	12403	12403		
LLLTPWVK	8	Unmodified	_LLLTPWVK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.310221	968.605889	-0.81115	-0.00039366	-1.7203	-0.00083487	-2.5314	-0.0012285	485.309451061579	14.648	0.15962	14.648	14.586	14.746	0	744	76	0.82502364452135	0.0509766066054806	0.82502364452135	335.154614144765	0	20.7085518466341						715	19	4	NaN	NaN	NaN	0.0022193	1	3609	53.679	19.866	1	415100			12404	1728	10437	10703	12404	12404		
LLLTSTEK	8	Unmodified	_LLLTSTEK_			0	0	0	Q7L0Y3	Q7L0Y3	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.771126	903.527698	-0.84505	-0.00038261	-7.3996	-0.0033503	-8.2446	-0.0037329	452.767429705725	5.8332	0.15959	5.8332	5.7623	5.9219	0	762	19	0.812773098473386	0.0122556587589242	0.812773098473386	330.510674060801	0	4.98371076144059						108	19	2	NaN	NaN	NaN	0.054267	1	2396	42.835	27.336	1	30990			12405	2111	10438	10704	12405	12405		
LLLTYADNILR	11	Unmodified	_LLLTYADNILR_			0	0	0	Q96IV0	Q96IV0	Q96IV0	NGLY1	Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.88227	1303.74999	0.037256	2.4324E-05	-0.12401	-8.0964E-05	-0.086754	-5.664E-05	652.882398389774	15.686	0.062068	15.686	15.668	15.73	0	519	37	0.97729762293174	0.0242341119852805	0.97729762293174	395.582022867835	0	9.80927285260827						143	8	3	NaN	NaN	NaN	0.0015227	1	12481	67.507	35.555	1	28430			12406	2561	10439	10705	12406	12406		
LLLWAQNELDQK	12	Unmodified	_LLLWAQNELDQK_			0	0	0	Q9NWU2	Q9NWU2	Q9NWU2	GID8	Glucose-induced degradation protein 8 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.901191	1469.78783	1.2617	0.00092845	0.63341	0.00046612	1.8951	0.0013946	736.40262799697	14.169	0.21282	14.169	14.045	14.258	0	417	64	1.04580932352505	0.0421847776548527	1.04580932352505	422.811790729792	0	17.0549458496572						497	25	3	NaN	NaN	NaN	0.0074112	1	17588	31.425	21.682	1	110620			12407	3085	10440	10706	12407	12407		
LLMLDDQR	8	Unmodified	_LLMLDDQR_			0	0	0	P04062	P04062	P04062	GBA	Glucosylceramidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.265684	1002.51682	-0.49199	-0.00024711	0.61171	0.00030724	0.11973	6.0135E-05	502.266534773732	9.4164	0.12419	9.4164	9.3632	9.4874	0	657	28	0.884090832094921	0.0182955837794518	0.884090832094921	358.979750487026	0	7.42881145436081						209	15	3	NaN	NaN	NaN	0.002729	1	4356	67.903	44.593	1	42389			12408	503	10441	10707	12408	12408		
LLMLGLDNAGK	11	Unmodified	_LLMLGLDNAGK_			0	0	0	P36404	P36404	P36404	ARL2	ADP-ribosylation factor-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.823366	1143.63218	0.5205	0.00029815	-2.8559	-0.001636	-2.3354	-0.0013378	572.823470866093	13.017	0.18619	13.017	12.928	13.114	-1.7764E-15	588	31	0.93076847747433	0.0202622968311691	0.93076847747433	377.30092620411	0	8.21362513497189						349	22	4	NaN	NaN	NaN	0.00082631	1	7901	83.623	60.048	1	108670			12409	982	10442	10708	12409	12409		
LLMQPLSSIHVR	12	Unmodified	_LLMQPLSSIHVR_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	465.27099	1392.79114	-2.0426	-0.00095038	-2.3604	-0.0010982	-4.403	-0.0020486	465.269414149286	11.722	0.11527	11.722	11.687	11.802	0	762	28	0.812773098473386	0.0183796540051641	0.812773098473386	493.146397907372	0	11.151771859151						126	14	2	NaN	NaN	NaN	0.03482	1	15250	19.324	16.221	1	31776			12410	2005	10443	10709	12410	12410		
LLMSDIVFMR	10	Unmodified	_LLMSDIVFMR_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.827595	1223.64064	-0.27771	-0.00017019	-0.30397	-0.00018628	-0.58169	-0.00035647	612.828047957272	17.122	0.17733	17.122	17.043	17.22	0	585	31	0.932794566565362	0.0202594899473871	0.932794566565362	377.827532075233	0	8.20608670150085						250	21	3	NaN	NaN	NaN	0.0042884	1	10123	49.96	27.574	1	61055			12411	1768	10444	10710	12411	12411		
LLMTEVAWTK	10	Unmodified	_LLMTEVAWTK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.325742	1190.63693	0.8451	0.00050395	-3.3127	-0.0019754	-2.4676	-0.0014715	596.32379791864	12.768	0.15076	12.768	12.697	12.848	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	370.551972549727	0	9.04012812852147						319	18	4	NaN	NaN	NaN	0.007163	1	9187	58.916	49.401	1	101040			12412	702	10445	10711	12412	12412		
LLNCQEFAVDLEHHSYR	17	Unmodified	_LLNCQEFAVDLEHHSYR_			0	0	0	Q01780	Q01780	Q01780	EXOSC10	Exosome component 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	533.506095	2129.99527	-0.689	-0.00036758	0.086548	4.6174E-05	-0.60245	-0.00032141	533.757046881243	11.19	0.097535	11.19	11.154	11.252	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	671.74394842022	0	13.1563020415791						246	12	5	NaN	NaN	NaN	0.0054682	1	33738	50.641	47.557	1	71128			12413	1520	10446	10712	12413	12413		
LLNDEDPVVVTK	12	Unmodified	_LLNDEDPVVVTK_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.36665	1340.71875	1.425	0.00095672	-3.952	-0.0026532	-2.5269	-0.0016965	671.364212039121	8.8665	0.22179	8.8665	8.769	8.9908	0	501	40	0.98941132619024	0.0262336619569801	0.98941132619024	400.369507654533	0	10.6155630562006						506	26	3	NaN	NaN	NaN	0.0027748	1	13630	70.195	41.548	1	198940			12414	706	10447	10713	12414	12414		
LLNENSYVPR	10	Unmodified	_LLNENSYVPR_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.81967	1203.62479	1.1308	0.00068164	1.3994	0.00084358	2.5302	0.0015252	602.82036315557	7.589	0.1418	7.589	7.527	7.6688	-8.8818E-16	528	79	0.971237000454584	0.0525799752862226	0.971237000454584	393.471557876658	0	21.3014174493999						642	17	4	NaN	NaN	NaN	2.2254E-10	1	9577	158.37	102.35	1	365870			12415	495	10448	10714	12415	12415		
LLNETLGEVGSPGLLFYSLR	20	Unmodified	_LLNETLGEVGSPGLLFYSLR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1089.59389	2177.17322	0.23607	0.00025722	1.0091	0.0010995	1.2452	0.0013567	1090.0960856242	19.579	0.097536	19.579	19.525	19.623	0	105	52	1.25339330680955	0.0336971780106132	1.25339330680955	505.197711951615	0	13.5821191462408						317	12	5	NaN	NaN	NaN	1.8386E-07	1	34412	60.324	32.047	1	66730			12416	2356	10449	10715	12416	12416		
LLNEVMVEHFFR	12	Unmodified	_LLNEVMVEHFFR_			0	0	0	Q9H871	Q9H871	Q9H871	RMND5A	Protein RMD5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.934266	1532.78097	-1.2584	-0.00064423	-1.5407	-0.00078873	-2.7991	-0.001433	512.267774021397	15.038	0.088643	15.038	15.003	15.092	0	729	25	0.835224628594324	0.0163159042618426	0.835224628594324	506.314141617793	0	9.89072014669404						183	11	4	NaN	NaN	NaN	0.0020847	1	19516	45.939	35.689	1	48340			12417	2924	10450	10716	12417	12417		
LLNFLMK	7	Unmodified	_LLNFLMK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.762049	877.509546	-2.3904	-0.0010512	-1.8164	-0.00079877	-4.2067	-0.00185	439.761345805315	13.877	0.15961	13.877	13.824	13.983	0	801	34	0.78619514174348	0.0225078287031693	0.78619514174348	319.844700827653	0	9.15677209843932						380	19	4	NaN	NaN	NaN	0.054411	1	1981	44.42	19.601	1	149890			12418	1465	10451	10717	12418	12418		
LLNFPTIVER	10	Unmodified	_LLNFPTIVER_			0	0	0	O43681	O43681	O43681	ASNA1	ATPase ASNA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.350606	1200.68666	0.7468	0.00044909	-3.0322	-0.0018234	-2.2854	-0.0013743	601.34925550847	14.515	0.28376	14.515	14.418	14.701	1.7764E-15	606	82	0.918606045818476	0.0547044532289912	0.918606045818476	372.159828299174	0	22.1627105695368						959	33	4	NaN	NaN	NaN	0.00015055	1	9494	78.816	36.741	1	339000			12419	219	10452	10718	12419	12419		
LLNILGLIFK	10	Unmodified	_LLNILGLIFK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.378635	1142.74272	-0.15995	-9.155E-05	-0.51479	-0.00029466	-0.67474	-0.00038621	572.37838084411	20.155	0.0088684	20.155	20.155	20.164	0	594	43	0.926715457081489	0.028363289192291	0.926715457081489	375.661446624985	0	11.4975898670933						44	2	2	NaN	NaN	NaN	0.018488	1	7871	43.734	43.171	1	14412			12420	1794	10453	10719	12420	12420		
LLNILMQLR	9	Unmodified	_LLNILMQLR_			0	0	0	O60264;P28370	O60264	O60264	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.344269	1112.67399	-1.1159	-0.00062197	-0.90159	-0.0005025	-2.0175	-0.0011245	557.343789911889	16.794	0.088664	16.794	16.75	16.839	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	365.088614350495	0	7.41061703025076						205	11	3	NaN	NaN	NaN	0.00010979	1	7067	89.123	55.31	1	60449			12421	251	10454	10720	12421	12421		
LLNIWQER	8	Unmodified	_LLNIWQER_			0	0	0	Q9NQG5	Q9NQG5	Q9NQG5	RPRD1B	Regulation of nuclear pre-mRNA domain-containing protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.300916	1070.58728	-0.6472	-0.00034709	0.45806	0.00024566	-0.18914	-0.00010144	536.301592069349	11.961	0.18623	11.961	11.899	12.086	0	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	366.911411879332	0	7.41212413296512						243	22	3	NaN	NaN	NaN	0.0019918	1	5977	69.905	43.681	1	62851			12422	3000	10455	10721	12422	12422		
LLNLIDDLK	9	Unmodified	_LLNLIDDLK_			0	0	0		REV__O14920	REV__O14920			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.818607	1055.62266	-0.07013	-3.7086E-05	9.409	0.0049756	9.3388	0.0049385	528.823900750047	12.254	0.18622	12.254	12.192	12.378	0	687	52	0.863749705078866	0.0346015342671149	0.863749705078866	350.481349939418	0	14.0401697026411						541	22	4	NaN	NaN	NaN	0.012363	1	5619	49.325	15.512	1	462240	+		12423	3483	10456	10722	12423	12423		
LLNNAFEELVAFQR	14	Unmodified	_LLNNAFEELVAFQR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.298262	1662.87296	-1.1441	-0.0006353	0.18863	0.00010475	-0.95543	-0.00053055	555.298207479711	18.115	0.097522	18.115	18.08	18.178	0	690	28	0.86171403876517	0.0183235429829339	0.86171403876517	522.006546877118	0	11.0999809319371						234	12	4	NaN	NaN	NaN	9.1291E-05	1	23428	113.46	102.1	1	81460			12424	835	10457	10723	12424	12424		
LLNNAFEELVAFQR	14	Unmodified	_LLNNAFEELVAFQR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.443754	1662.87296	1.9046	0.0015855	-0.16049	-0.0001336	1.7441	0.0014519	832.443269945673	18.115	0.1241	18.115	18.071	18.195	0	348	49	1.09197348738011	0.0320677454165734	1.09197348738011	440.997157668623	0	12.9506666095705						482	15	4	NaN	NaN	NaN	7.3862E-25	1	23430	224.09	198.51	1	175710			12425	835	10457	10723	12425	12425		
LLNPSLQK	8	Unmodified	_LLNPSLQK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.779285	911.544017	-0.28785	-0.00013148	-2.1601	-0.00098671	-2.448	-0.0011182	456.778559481716	5.7445	0.14188	5.7445	5.6913	5.8332	0	747	40	0.822982596624503	0.0265410084545386	0.822982596624503	334.618233493431	0	10.7913647270527						279	17	3	NaN	NaN	NaN	0.005675	1	2534	78.178	33.758	1	75643			12426	2947	10458	10724	12426	12426		
LLNQLQYCEEAGIPLVAIIGEQELK	25	Unmodified	_LLNQLQYCEEAGIPLVAIIGEQELK_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.840404	2840.49938	0.53367	0.00050584	0.24052	0.00022798	0.7742	0.00073381	948.509389001062	19.96	0.026599	19.96	19.942	19.969	0	141	25	1.2295923935727	0.01588250946438	1.2295923935727	742.303643303405	0	9.58825436936388						70	4	4	NaN	NaN	NaN	0.068928	1	37985	8.8925	8.5687	1	12347			12427	664	10459	10725	12427	12427		
LLNQPNQWPLVK	12	Unmodified	_LLNQPNQWPLVK_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.414269	1448.81398	1.4948	0.0010843	-0.10424	-7.5619E-05	1.3905	0.0010087	725.41400788519	12.733	0.18624	12.733	12.626	12.813	0	456	37	1.01965166402748	0.0241672134976301	1.01965166402748	412.292126428081	0	9.77191740503139						325	22	3	NaN	NaN	NaN	0.0079228	1	16955	39.01	31.009	1	76323			12428	706	10460	10726	12428	12428		
LLNTFLER	8	Unmodified	_LLNTFLER_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.290017	1004.56548	-0.17434	-8.7743E-05	-0.99114	-0.00049883	-1.1655	-0.00058657	503.289327950129	11.199	0.18623	11.199	11.119	11.305	0	693	34	0.85967808974117	0.0223954425033767	0.85967808974117	349.057473764931	0	9.09328349455791						289	22	2	NaN	NaN	NaN	0.017267	1	4389	65.313	26.99	1	140760			12429	1737	10461	10727	12429	12429		
LLNVWQVR	8	Unmodified	_LLNVWQVR_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.306001	1026.59745	-0.15155	-7.7944E-05	-1.3915	-0.00071566	-1.5431	-0.0007936	514.305410254808	12.263	0.13303	12.263	12.21	12.343	0	672	34	0.873923798053065	0.0223767933297507	0.873923798053065	354.738788048447	0	9.08307630927379						249	16	3	NaN	NaN	NaN	0.013714	1	4908	49.058	26.672	1	75916			12430	1807	10462	10728	12430	12430		
LLPALASVPALPSDS	15	Unmodified	_LLPALASVPALPSDS_			0	0	0	Q03154	Q03154	Q03154	ACY1	Aminoacylase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.911224	1449.8079	0.877	0.00063663	-2.2065	-0.0016017	-1.3295	-0.00096507	725.909312995976	17.823	0.10638	17.823	17.779	17.885	0	453	52	1.02166545906632	0.0342203468041924	1.02166545906632	413.103726101124	0	13.8367727398789						305	13	3	NaN	NaN	NaN	0.002724	1	16987	55.235	46.761	1	67943			12431	1536	10463	10729	12431	12431		
LLPALTVLDIHDNQLTSLPSAIR	23	Unmodified	_LLPALTVLDIHDNQLTSLPSAIR_			0	0	0	Q9H9A6	Q9H9A6	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.142634	2499.40607	0.58969	0.00049189	-0.5128	-0.00042775	0.076891	6.4138E-05	834.476203965557	18.834	0.088684	18.834	18.781	18.869	0	486	28	0.999498404980629	0.0181517240953996	0.999498404980629	603.797188850222	0	10.9654602018095						245	11	5	NaN	NaN	NaN	0.00025799	1	36823	54.261	49.179	1	56513			12432	2932	10464	10730	12432	12432		
LLPAPSFSLDDMDVDK	16	Unmodified	_LLPAPSFSLDDMDVDK_			0	0	0	Q5VV41	Q5VV41	Q5VV41	ARHGEF16	Rho guanine nucleotide exchange factor 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.932028	1761.8495	1.9362	0.0017076	-0.25769	-0.00022727	1.6785	0.0014803	882.433841127936	16.111	0.09756	16.111	16.076	16.174	0	294	40	1.12800004657306	0.0259923277309138	1.12800004657306	455.335058663159	0	10.4922141697634						193	12	3	NaN	NaN	NaN	0.043415	1	26191	38.14	33.894	1	45527			12433	2010	10465	10731	12433	12433		
LLPDFLLER	9	Unmodified	_LLPDFLLER_			0	0	0	Q12894	Q12894	Q12894	IFRD2	Interferon-related developmental regulator 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.326599	1114.63865	-0.27542	-0.00015377	-0.049632	-2.7711E-05	-0.32505	-0.00018148	558.327012012382	16.209	0.23943	16.209	16.147	16.386	0	633	73	0.900343422309015	0.0486834828288254	0.900343422309015	365.080736907609	0	19.7406915472265						368	28	3	NaN	NaN	NaN	0.0081255	1	7132	62.969	31.017	1	104440			12434	1603	10466	10732	12434	12434		
LLPDITLLEPVEGEAAEELSR	21	Unmodified	_LLPDITLLEPVEGEAAEELSR_			0	0	0	O15160	O15160	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1147.60993	2293.20531	0.055001	6.312E-05	-0.033156	-3.805E-05	0.021845	2.507E-05	1148.11104148381	19.729	0.088688	19.729	19.694	19.782	0	69	31	1.27715511956461	0.0197879567464534	1.27715511956461	514.61007501912	0	7.97325379648396						177	11	3	NaN	NaN	NaN	1.1973E-08	1	35587	87.251	78.095	1	34137			12435	151	10467	10733	12435	12435		
LLPEEYHR	8	Unmodified	_LLPEEYHR_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.777274	1055.53999	1.6672	0.0008816	2.6783	0.0014162	4.3455	0.0022978	528.778785601659	4.4765	0.12413	4.4765	4.4322	4.5563	0	639	43	0.896281965493857	0.0284420373903148	0.896281965493857	363.682274415902	0	11.5408601816865						256	15	3	NaN	NaN	NaN	0.0055224	1	5607	60.709	34.252	1	53215			12436	1968	10468	10734	12436	12436		
LLPELLQPYTER	12	Unmodified	_LLPELLQPYTER_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.411391	1470.80823	1.2718	0.00093653	-0.31882	-0.00023478	0.95293	0.00070175	736.411430147271	15.038	0.23054	15.038	14.923	15.154	0	423	61	1.04178812298108	0.0402342316744719	1.04178812298108	421.183332216997	0	16.2662516417962						900	27	5	NaN	NaN	NaN	1.5109E-16	1	17621	171.34	140.42	1	468280			12437	1623	10469	10735	12437	12437		
LLPGIEVLWTGPK	13	Unmodified	_LLPGIEVLWTGPK_			0	0	0	O60502	O60502	O60502	MGEA5	Protein O-GlcNAcase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.921395	1421.82824	0.063058	4.4892E-05	-0.18581	-0.00013228	-0.12276	-8.7392E-05	711.921617057204	18.178	0.088668	18.178	18.133	18.222	0	507	25	0.985374541851584	0.0161493714671825	0.985374541851584	398.503823474307	0	6.53110670414338						178	11	3	NaN	NaN	NaN	0.0062737	1	16160	43.306	35.748	1	42264			12438	262	10470	10736	12438	12438		
LLPHMHNIVEYMLQR	15	Unmodified	_LLPHMHNIVEYMLQR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	474.251109	1892.97533	-2.7391	-0.001299	-0.20906	-9.9145E-05	-2.9481	-0.0013981	474.250435593169	14.834	0.2749	14.834	14.799	15.074	0	789	61	0.794378096728713	0.0408635813635408	0.794378096728713	640.974625134686	0	32.9723576896422						333	32	4	NaN	NaN	NaN	0.065116	1	29446	13.175	6.4276	1	66349			12439	2448	10471	10737	12439	12439		
LLPHMHNIVEYMLQR	15	Unmodified	_LLPHMHNIVEYMLQR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.999053	1892.97533	-1.3176	-0.0008327	-0.076644	-4.8439E-05	-1.3942	-0.00088114	632.333514323292	14.843	0.19505	14.843	14.79	14.985	0	717	37	0.84338031290707	0.0244568589772431	0.84338031290707	510.387438245662	0	14.8005276029083						673	23	5	NaN	NaN	NaN	1.9169E-06	1	29447	99.589	88.617	1	265410			12440	2448	10471	10737	12440	12440		
LLPHMHNIVEYMLQR	15	Unmodified	_LLPHMHNIVEYMLQR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.999053	1892.97533	-0.81872	-0.00051743	-0.11411	-7.212E-05	-0.93284	-0.00058955	632.333289016831	14.843	0.12416	14.843	14.799	14.923	0	630	49	0.902373728295776	0.0324961712839548	0.902373728295776	546.088411837815	0	19.6656684595408						406	15	4	NaN	NaN	NaN	0.00010783	1	29448	77.358	66.387	1	84461			12441	2448	10471	10737	12441	12441		
LLPHMHNIVEYMLQR	15	Unmodified	_LLPHMHNIVEYMLQR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.494941	1892.97533	0.50305	0.00047664	0.75277	0.00071324	1.2558	0.0011899	947.496052290366	14.834	0.097544	14.834	14.799	14.897	0	138	46	1.23157729878518	0.0297776690523228	1.23157729878518	496.876677096457	0	12.0137235924945						437	12	4	NaN	NaN	NaN	0.0087551	1	29449	39.702	37.86	1	109270			12442	2448	10471	10737	12442	12442		
LLPHQLYGVVPQA	13	Unmodified	_LLPHQLYGVVPQA_			0	0	0	P18887	P18887	P18887	XRCC1	DNA repair protein XRCC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.908819	1433.80309	2.6564	0.001907	-1.4632	-0.0010505	1.1931	0.00085656	717.908199536856	12.884	0.13302	12.884	12.83	12.963	0	399	31	1.0578662689527	0.0200865957702232	1.0578662689527	427.786409667116	0	8.12274002789167						277	16	3	NaN	NaN	NaN	0.0030875	1	16508	49.16	33.281	1	59447			12443	761	10472	10738	12443	12443		
LLPLEEHYR	9	Unmodified	_LLPLEEHYR_			0	0	0	Q9H4M9;Q9NZN3;Q9NZN4	Q9H4M9	Q9H4M9	EHD1;EHD3;EHD2	EH domain-containing protein 1;EH domain-containing protein 3;EH domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.319306	1168.62406	1.6947	0.00099193	2.3135	0.0013541	4.0081	0.002346	585.319823296691	7.3319	0.1596	7.3319	7.2875	7.4472	0	555	46	0.953040030838688	0.0303576898931419	0.953040030838688	386.230567523612	0	12.3028072449547						497	19	5	NaN	NaN	NaN	0.017696	1	8572	45.489	36.512	1	136910			12444	2897	10473	10739	12444	12444		
LLPLVSDEVFIR	12	Unmodified	_LLPLVSDEVFIR_			0	0	0	P11216	P11216	P11216	PYGB	Glycogen phosphorylase, brain form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.911027	1399.8075	0.55327	0.0003878	-3.0593	-0.0021443	-2.506	-0.0017565	701.410322797	17.202	0.1419	17.202	17.14	17.282	0	438	40	1.03173026378327	0.0261612711685622	1.03173026378327	417.314181739193	0	10.5817090514842						372	17	4	NaN	NaN	NaN	0.00036967	1	15454	55.235	43.879	1	102930			12445	646	10474	10740	12445	12445		
LLPPLLQIVCK	11	Unmodified	_LLPPLLQIVCK_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.401784	1292.78901	0.43048	0.00027869	0.13949	9.0304E-05	0.56997	0.000369	647.903782722837	18.036	0.25712	18.036	17.876	18.133	0	549	64	0.957085760909907	0.0424419911794726	0.957085760909907	387.435278322818	0	17.1808267730998						1047	30	4	NaN	NaN	NaN	0.00049097	1	12167	77.072	69.921	1	297430			12446	2356	10475	10741	12446	12446		
LLPQFLLHLDK	11	Unmodified	_LLPQFLLHLDK_			0	0	0	Q8N4J0	Q8N4J0	Q8N4J0	C9orf41	UPF0586 protein C9orf41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.271096	1335.79146	-2.5675	-0.0011458	-0.2005	-8.9479E-05	-2.768	-0.0012353	446.271151640916	15.145	0.11528	15.145	15.101	15.216	1.7764E-15	795	16	0.790287188799094	0.0102294058339829	0.790287188799094	479.703949098356	0	6.20924449369869						127	14	3	NaN	NaN	NaN	0.072832	1	13474	7.5574	4.679	1	25537			12447	2252	10476	10742	12447	12447		
LLPQFLLHLDK	11	Unmodified	_LLPQFLLHLDK_			0	0	0	Q8N4J0	Q8N4J0	Q8N4J0	C9orf41	UPF0586 protein C9orf41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.903005	1335.79146	1.0212	0.00068309	2.0236	0.0013536	3.0448	0.0020366	668.904366203148	15.145	0.079823	15.145	15.109	15.189	1.7764E-15	423	25	1.04178812298108	0.0160870233612731	1.04178812298108	421.579841127363	0	6.50992711785881						96	10	2	NaN	NaN	NaN	0.0063502	1	13476	37.749	31.883	1	22769			12448	2252	10476	10742	12448	12448		
LLPQGLAVYASPENK	15	Unmodified	_LLPQGLAVYASPENK_			0	0	0	Q9BYD2	Q9BYD2	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.44068	1598.86681	1.6954	0.001357	0.95301	0.00076283	2.6484	0.0021199	800.441594140174	12.361	0.2217	12.361	12.227	12.449	0	264	55	1.14797626962532	0.0359127357341398	1.14797626962532	463.767403460035	0	14.5082756876189						660	26	3	NaN	NaN	NaN	4.2756E-06	1	21552	114.93	109.78	1	152970			12449	2798	10477	10743	12449	12449		
LLPQLTYLDGYDRDDK	16	Unmodified	_LLPQLTYLDGYDRDDK_			0	0	1	P39687	P39687	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.326546	1923.95781	0.65125	0.00041831	-1.1179	-0.00071806	-0.46665	-0.00029974	642.66034169925	13.637	0.17734	13.637	13.575	13.753	0	627	106	0.90440375274676	0.0711298479879681	0.90440375274676	547.252856591242	0	43.0405251881081						1310	21	6	NaN	NaN	NaN	1.8626E-08	1	30150	133.49	107.02	1	809260			12450	1012	10478	10744	12450	12450		
LLPQLTYLDGYDRDDK	16	Unmodified	_LLPQLTYLDGYDRDDK_			0	0	1	P39687	P39687	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.326546	1923.95781	1.1698	0.00075142	-1.3994	-0.00089886	-0.22955	-0.00014745	642.325674289177	12.884	0.079819	12.884	12.857	12.937	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	536.191449152018	0	13.5288813073074						211	10	4	NaN	NaN	NaN	0.0433	1	30152	23.149	22.529	1	46804			12451	1012	10478	10744	12451	12451		
LLPQLTYLDGYDRDDK	16	Unmodified	_LLPQLTYLDGYDRDDK_			0	0	1	P39687	P39687	P39687	ANP32A	Acidic leucine-rich nuclear phosphoprotein 32 family member A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.98618	1923.95781	2.0088	0.0019345	-0.066185	-6.3735E-05	1.9426	0.0018707	963.48770249468	13.629	0.27486	13.629	13.567	13.841	0	141	133	1.2295923935727	0.0875099348498141	1.2295923935727	496.017745826327	0	35.301520120413						1795	32	6	NaN	NaN	NaN	3.992E-23	1	30153	214.14	187.56	1	1926600			12452	1012	10478	10744	12452	12452		
LLPSAPQTLPDGPLASPAR	19	Unmodified	_LLPSAPQTLPDGPLASPAR_			0	0	0	O15027	O15027	O15027	SEC16A	Protein transport protein Sec16A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.028182	1900.04181	2.5432	0.0024187	-1.1647	-0.0011077	1.3785	0.001311	951.528570121226	12.963	0.12414	12.963	12.901	13.026	0	240	58	1.16393748060522	0.037879242934697	1.16393748060522	469.57486642646	0	15.2818692909063						633	15	4	NaN	NaN	NaN	0.00081671	1	29610	62.398	54.433	1	155170			12453	138	10479	10745	12453	12453		
LLPVLLSTAQEADPEVR	17	Unmodified	_LLPVLLSTAQEADPEVR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.014741	1850.01493	1.5142	0.0014021	0.36353	0.00033663	1.8777	0.0017388	926.51653538144	15.615	0.15066	15.615	15.553	15.704	0	174	67	1.20774045859593	0.0437128828362645	1.20774045859593	487.342085903515	0	17.6388290635285						826	18	4	NaN	NaN	NaN	7.584E-14	1	28499	139.7	117.7	1	249900			12454	2356	10480	10746	12454	12454		
LLPVLVHTFWIDTK	14	Unmodified	_LLPVLVHTFWIDTK_			0	0	0	Q13505	Q13505	Q13505	MTX1	Metaxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.327381	1680.96031	-1.2816	-0.00071938	-1.2014	-0.00067435	-2.4829	-0.0013937	561.660967702954	17.566	0.10642	17.566	17.513	17.619	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	512.089618665277	0	12.345071840396						192	13	3	NaN	NaN	NaN	0.015026	1	23949	51.454	38.279	1	35354			12455	1674	10481	10747	12455	12455		
LLPYEQSSLLELIK	14	Unmodified	_LLPYEQSSLLELIK_			0	0	0	Q2M389	Q2M389	Q2M389	KIAA1033	WASH complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.474189	1644.93382	0.89654	0.00073828	0.86258	0.00071031	1.7591	0.0014486	823.474597485118	18.266	0.079799	18.266	18.231	18.311	0	240	28	1.16393748060522	0.0179477258867462	1.16393748060522	470.102414181764	0	7.24890246170668						216	10	4	NaN	NaN	NaN	0.00034831	1	22896	64.266	39.576	1	54172			12456	1922	10482	10748	12456	12456		
LLQAFLER	8	Unmodified	_LLQAFLER_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.292559	988.570566	-0.47163	-0.00023359	-0.32044	-0.00015871	-0.79207	-0.00039231	495.292540245429	11.811	0.17736	11.811	11.749	11.926	0	705	58	0.851531465363931	0.0386991694587414	0.851531465363931	345.825247886209	0	15.7165652890347						618	21	4	NaN	NaN	NaN	3.8975E-05	1	4028	138.55	84.87	1	452950			12457	1264	10483	10749	12457	12457		
LLQAGEENQVLELLIHR	17	Unmodified	_LLQAGEENQVLELLIHR_			0	0	0	Q9NPJ6	Q9NPJ6	Q9NPJ6	MED4	Mediator of RNA polymerase II transcription subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.037218	1974.08982	-0.3552	-0.00023409	-0.69717	-0.00045946	-1.0524	-0.00069355	659.371100183208	17.22	0.088674	17.22	17.184	17.273	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	568.005790600903	0	9.80132459310494						187	11	4	NaN	NaN	NaN	7.3364E-07	1	31190	88.42	72.804	1	48963			12458	2992	10484	10750	12458	12458		
LLQAMEPVHVAR	12	Unmodified	_LLQAMEPVHVAR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	455.25534	1362.74419	-0.27732	-0.00012625	0.56091	0.00025536	0.28359	0.0001291	455.255555070132	7.9615	0.13304	7.9615	7.9172	8.0502	0	723	31	0.839303037468863	0.0203920467361437	0.839303037468863	509.353503498125	0	12.3754591427147						297	16	4	NaN	NaN	NaN	0.0045911	1	14283	57.032	48.559	1	79591			12459	1881	10485	10751	12459	12459		
LLQAMEPVHVAR	12	Unmodified	_LLQAMEPVHVAR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.379371	1362.74419	1.8435	0.0012579	-0.35616	-0.00024303	1.4873	0.0010149	682.380008760818	7.9615	0.10646	7.9615	7.9172	8.0237	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.796675636314	0	7.32977014850178						251	13	4	NaN	NaN	NaN	0.045914	1	14284	37.749	31.883	1	62856			12460	1881	10485	10751	12460	12460		
LLQCYPPPEDAAVK	14	Unmodified	_LLQCYPPPEDAAVK_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.905616	1599.79668	2.1488	0.001721	-0.21052	-0.00016861	1.9383	0.0015524	800.90605906309	8.3697	0.23948	8.3697	8.2987	8.5382	0	399	49	1.0578662689527	0.0321208337760455	1.0578662689527	427.362012318621	0	12.9763322290945						758	28	4	NaN	NaN	NaN	0.032389	1	21575	44.82	40.292	1	185350			12461	452	10486	10752	12461	12461		
LLQDANYNVEK	11	Unmodified	_LLQDANYNVEK_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.835517	1305.65648	1.7136	0.0011204	-1.1287	-0.00073798	0.58488	0.00038241	653.834661699671	6.454	0.15961	6.454	6.4096	6.5693	0	525	34	0.973257487423603	0.0222253598495629	0.973257487423603	393.940664578766	0	8.99605001017397						298	19	3	NaN	NaN	NaN	7.2735E-05	1	12524	113.46	99.464	1	97456			12462	379	10487	10753	12462	12462		
LLQDFFNGK	9	Unmodified	_LLQDFFNGK_			0	0	0	P17066;P11142;P54652	P17066;P11142	P11142	HSPA6;HSPA8;HSPA2	Heat shock 70 kDa protein 6;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.287474	1080.5604	1.1348	0.00061424	-1.1439	-0.00061917	-0.009105	-4.9284E-06	541.287068141769	12.813	0.29265	12.813	12.724	13.017	0	672	46	0.873923798053065	0.0305138129080004	0.873923798053065	354.504307225698	0	12.3778275976282						917	34	4	NaN	NaN	NaN	0.0036875	1	6226	58.286	33.435	1	1392800			12463	640;734	10488	10754	12463	12463		
LLQDFFNGR	9	Unmodified	_LLQDFFNGR_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.290548	1108.56654	0.12158	6.7515E-05	-4.6017	-0.0025553	-4.4801	-0.0024878	555.287587080727	13.079	0.38129	13.079	12.919	13.3	0	663	106	0.880024865079826	0.0711693411068119	0.880024865079826	356.86564721764	0	28.8604265446882						1323	43	4	NaN	NaN	NaN	0.001349	1	6948	90.308	47.474	1	1360200			12464	618	10489	10755	12464	12464		
LLQDHPWLLSQNLVVK	16	Unmodified	_LLQDHPWLLSQNLVVK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.031516	1902.07272	-0.81617	-0.00051829	0.72695	0.00046163	-0.089224	-5.666E-05	635.366327834301	14.781	0.070967	14.781	14.755	14.826	0	645	67	0.892219381832517	0.0447318703478083	0.892219381832517	539.92454417725	0	27.0693903310317						397	9	3	NaN	NaN	NaN	3.0061E-07	1	29657	130.65	106.85	1	93240			12465	1235	10490	10756	12465	12465		
LLQDHPWLLSQNLVVKPDQLIK	22	Unmodified	_LLQDHPWLLSQNLVVKPDQLIK_			0	0	1	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	650.1258	2596.47409	0.87839	0.00057106	-1.2187	-0.00079229	-0.34028	-0.00022123	650.375693405909	16.165	0.17737	16.165	16.085	16.262	0	576	34	0.938871150116794	0.0222777233789591	0.938871150116794	756.0717869859	0	17.9402233448241						684	21	6	NaN	NaN	NaN	3.2383E-11	1	37233	92.319	82.446	1	365080			12466	1235	10491	10757	12466	12466		
LLQDLQLGDEEDAR	14	Unmodified	_LLQDLQLGDEEDAR_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.902116	1613.78968	2.3879	0.0019292	0.62743	0.0005069	3.0154	0.0024361	807.901966106011	11.42	0.10643	11.42	11.376	11.483	0	318	46	1.11199926528787	0.0300200623278843	1.11199926528787	449.197487785299	0	12.1267495418289						324	13	4	NaN	NaN	NaN	2.3494E-11	1	22004	138	118.68	1	77363			12467	1768	10492	10758	12467	12467		
LLQDSVDFSLADAINTEFK	19	Unmodified	_LLQDSVDFSLADAINTEFK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.53623	2125.05792	0.1808	0.00019228	1.2959	0.0013783	1.4767	0.0015706	1064.03914649905	19.064	0.42563	19.064	19.011	19.437	0	120	106	1.2434810169581	0.0693956361585035	1.2434810169581	501.280345126093	0	27.9752307991618						1814	49	6	NaN	NaN	NaN	1.0258E-20	1	33689	191.49	164.98	1	630810			12468	588	10493	10759	12468	12468		
LLQDYPITDVCQILQK	16	Unmodified	_LLQDYPITDVCQILQK_			0	0	0	Q9NVG8	Q9NVG8	Q9NVG8	TBC1D13	TBC1 domain family member 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.016426	1946.0183	1.2054	0.0011741	0.10438	0.00010167	1.3098	0.0012758	974.017302368682	17.131	0.15073	17.131	17.069	17.22	0	198	25	1.1918274123006	0.0159196013593108	1.1918274123006	480.744316280037	0	6.4214480988984						276	18	3	NaN	NaN	NaN	0.051392	1	30647	36.46	26.881	1	56580			12469	3064	10494	10760	12469	12469		
LLQEYAATAM	10	Unmodified	_LLQEYAATAM_			0	0	0		REV__Q9NTJ5	REV__Q9NTJ5			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.778625	1109.5427	0.41136	0.00022863	5.9938	0.0033312	6.4052	0.0035599	555.781587366796	13.691	0.29257	13.691	13.496	13.788	0	660	88	0.882057989648486	0.0589116082730322	0.882057989648486	357.686204367275	0	23.8894378869014						1263	34	5	NaN	NaN	NaN	0.0064376	1	6974	42.835	3.5107	1	3344100	+		12470	3514	10495	10761	12470	12470		
LLQFQDLTGIESMDQCR	17	Unmodified	_LLQFQDLTGIESMDQCR_			0	0	0	Q96CS3	Q96CS3	Q96CS3	FAF2	FAS-associated factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.48771	2052.96086	1.4601	0.0015002	-0.73048	-0.00075056	0.72958	0.00074963	1027.98867193824	16.608	0.20392	16.608	16.493	16.697	0	198	43	1.1918274123006	0.0278593067113035	1.1918274123006	480.566950307745	0	11.2333899403234						468	24	3	NaN	NaN	NaN	7.0863E-06	1	32577	87.727	83.173	1	152240			12471	2496	10496	10762	12471	12471		
LLQFQDLTGIESMDQCR	17	Oxidation (M)	_LLQFQDLTGIESM(Oxidation (M))DQCR_	LLQFQDLTGIESM(1)DQCR	LLQFQDLTGIESM(62)DQCR	0	1	0	Q96CS3	Q96CS3	Q96CS3	FAF2	FAS-associated factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.48516	2068.95578	1.3305	0.0013777	2.3667	0.0024507	3.6972	0.0038284	1035.48908898443	15.021	0.11527	15.021	14.967	15.083	0	189	31	1.1977968526266	0.0198967707037836	1.1977968526266	482.948845809108	0	8.0223306862506						221	14	4	NaN	NaN	NaN	0.00016612	1	32861	62.494	57.677	1	38031			12472	2496	10496	10763	12472	12472	606	
LLQFYAETCPAPER	14	Unmodified	_LLQFYAETCPAPER_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.913972	1693.81339	2.5623	0.0021726	-1.631	-0.0013829	0.93133	0.00078968	848.414177599392	11.323	0.15966	11.323	11.261	11.42	0	336	43	1.09998710857178	0.0280360922618905	1.09998710857178	444.166426228945	0	11.3207607692398						430	19	3	NaN	NaN	NaN	0.0099475	1	24308	52.837	37.221	1	127500			12473	54	10497	10764	12473	12473		
LLQHGINADDK	11	Unmodified	_LLQHGINADDK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	408.55081	1222.6306	-0.99121	-0.00040496	1.5086	0.00061635	0.5174	0.00021138	408.551365502345	3.4834	0.12427	3.4834	3.4567	3.581	0	846	28	0.755468431110051	0.0184565853443666	0.755468431110051	459.002632280528	0	11.213732972967						167	15	2	NaN	NaN	NaN	0.066848	1	10092	23.836	20.733	1	46443			12474	2594	10498	10765	12474	12474		
LLQHGINADDK	11	Unmodified	_LLQHGINADDK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.322576	1222.6306	1.9244	0.0011783	0.16828	0.00010304	2.0926	0.0012814	612.322619687439	3.4923	0.10653	3.4923	3.4567	3.5633	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	388.489423830638	0	6.55312258076435						155	13	3	NaN	NaN	NaN	0.00068517	1	10094	88.24	77.453	1	31356			12475	2594	10498	10765	12475	12475		
LLQIIER	7	Unmodified	_LLQIIER_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.781828	883.549102	-2.5651	-0.0011358	-0.53475	-0.00023678	-3.0999	-0.0013726	442.78188515711	9.4253	0.14189	9.4253	9.381	9.5228	0	771	31	0.806643990516186	0.0204346260342226	0.806643990516186	328.129275851077	0	8.31246388956089						151	17	2	NaN	NaN	NaN	0.034466	1	2059	56.091	4.6344	1	40674			12476	1465	10499	10766	12476	12476		
LLQISLWGNK	10	Unmodified	_LLQISLWGNK_			0	0	0	Q9H993	Q9H993	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.345323	1170.67609	0.048588	2.8489E-05	-0.80405	-0.00047145	-0.75547	-0.00044296	586.344942186622	14.959	0.088668	14.959	14.923	15.012	0	615	25	0.912521036363781	0.016227817631378	0.912521036363781	369.802224936677	0	6.57637777849305						148	11	3	NaN	NaN	NaN	0.02877	1	8638	32.14	22.052	1	32607			12477	2930	10500	10767	12477	12477		
LLQLQEQMR	9	Unmodified	_LLQLQEQMR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.818615	1157.62268	0.64659	0.0003749	1.6664	0.00096619	2.3129	0.0013411	579.819861645104	8.7245	0.15982	8.7245	8.6623	8.8221	0	606	37	0.918606045818476	0.0243349817538098	0.918606045818476	372.317064500051	0	9.86312795619364						293	19	3	NaN	NaN	NaN	0.00044367	1	8294	94.806	40.928	1	111420			12478	718	10501	10768	12478	12478		
LLQLVEDR	8	Unmodified	_LLQLVEDR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.287474	984.560395	0.19475	9.6067E-05	-1.4323	-0.00070655	-1.2376	-0.00061048	493.286650716034	9.2213	0.16852	9.2213	9.1858	9.3544	0	672	34	0.873923798053065	0.0223767933297507	0.873923798053065	354.939098712941	0	9.08820525798888						272	20	3	NaN	NaN	NaN	0.0035605	1	3943	78.178	43.101	1	218960			12479	743	10502	10769	12479	12479		
LLQLWEK	7	Unmodified	_LLQLWEK_			0	0	0	Q8IWX8	Q8IWX8	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.276378	928.538203	-1.6437	-0.00076477	-2.3235	-0.0010811	-3.9672	-0.0018459	465.27514585187	11.598	0.15966	11.598	11.545	11.704	0	756	28	0.816857749704129	0.0183796540051641	0.816857749704129	332.037678190518	0	7.47099191264351						263	19	3	NaN	NaN	NaN	0.032485	1	2855	42.835	22.176	1	83205			12480	2206	10503	10770	12480	12480		
LLQMQPAQHGEIIK	14	Unmodified	_LLQMQPAQHGEIIK_			0	0	0	O00203;Q13367	O00203	O00203	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.4427	1604.87085	3.0915	0.0024838	-0.90693	-0.00072867	2.1845	0.0017552	803.442464723092	7.7576	0.071066	7.7576	7.7309	7.802	0	324	31	1.1079963157843	0.020020262712183	1.1079963157843	447.601650154505	0	8.08766464187806						166	9	3	NaN	NaN	NaN	7.1306E-05	1	21754	93.162	76.17	1	34876			12481	61	10504	10771	12481	12481		
LLQQLFLK	8	Unmodified	_LLQQLFLK_			0	0	0	Q9P287	Q9P287	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.820953	1001.62735	-0.37733	-0.00018935	-1.7613	-0.00088384	-2.1386	-0.0010732	501.819976180295	13.646	0.17734	13.646	13.593	13.77	0	690	46	0.86171403876517	0.0305265242845556	0.86171403876517	349.898006171128	0	12.3952604947769						368	21	3	NaN	NaN	NaN	0.0097008	1	4346	40.203	13.98	1	147730			12482	3154	10505	10772	12482	12482		
LLQQQNLPQTGEQELESLVLK	21	Unmodified	_LLQQQNLPQTGEQELESLVLK_			0	0	0	O15357	O15357	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.439228	2407.29585	0.36362	0.00029214	-0.54886	-0.00044098	-0.18525	-0.00014883	803.773220674881	17.681	0.088678	17.681	17.637	17.725	0	555	22	0.953040030838688	0.0141629966659658	0.953040030838688	575.853447761234	0	8.55767879293592						196	11	4	NaN	NaN	NaN	4.8975E-08	1	36387	93.026	90.28	1	43536			12483	167	10506	10773	12483	12483		
LLQQVSQIYQSIEFSR	16	Unmodified	_LLQQVSQIYQSIEFSR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.017815	1938.02108	1.3113	0.001272	0.34212	0.00033186	1.6534	0.0016039	970.520032900147	17.087	0.16845	17.087	17.043	17.211	0	216	76	1.17988115188462	0.0498068956194959	1.17988115188462	475.939489510642	0	20.0910646274742						949	20	5	NaN	NaN	NaN	2.1684E-06	1	30475	88.42	75.202	1	235940			12484	1728	10507	10774	12484	12484		
LLQSLLDTR	9	Unmodified	_LLQSLLDTR_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.813856	1057.61316	-0.22488	-0.00011915	-4.051	-0.0021463	-4.2759	-0.0022654	529.811196877974	11.678	0.11527	11.678	11.624	11.74	0	639	49	0.896281965493857	0.0324826533406289	0.896281965493857	363.67312501929	0	13.1800800463454						282	14	3	NaN	NaN	NaN	0.0025252	1	5668	48.157	26.23	1	73410			12485	1621	10508	10775	12485	12485		
LLQSPCPFCDSPVF	14	Unmodified	_LLQSPCPFCDSPVF_			0	0	0	Q9UKN8	Q9UKN8	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.883826	1665.7531	1.387	0.0011566	1.3802	0.0011509	2.7672	0.0023075	834.387322599459	17.628	0.12413	17.628	17.566	17.69	0	375	31	1.07392668217569	0.020067214614357	1.07392668217569	433.702692258144	0	8.10409606988873						248	15	4	NaN	NaN	NaN	0.0050086	1	23495	57.293	53.788	1	48504			12486	3267	10509	10776	12486	12486		
LLQTCFSSPADDSMDR	16	Unmodified	_LLQTCFSSPADDSMDR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.903476	1841.7924	2.577	0.0023757	-1.1195	-0.0010321	1.4575	0.0013436	921.90229713935	10.339	0.18619	10.339	10.277	10.463	0	291	43	1.12999890578964	0.0279859609320023	1.12999890578964	455.9873127397	0	11.2931464397344						542	22	5	NaN	NaN	NaN	1.7071E-08	1	28273	126.63	120.25	1	144470			12487	3134	10510	10777	12487	12487		
LLQTDDEEEAGLLELLK	17	Unmodified	_LLQTDDEEEAGLLELLK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.673611	1927.999	0.16855	0.00010849	-0.75908	-0.0004886	-0.59053	-0.00038011	643.672863084227	18.656	0.070941	18.656	18.621	18.692	0	567	22	0.944945209309785	0.0141708428887385	0.944945209309785	571.775834041518	0	8.57461938740141						162	9	4	NaN	NaN	NaN	0.0010689	1	30247	79.235	77.761	1	43920			12488	1264	10511	10778	12488	12488		
LLQTDDEEEAGLLELLK	17	Unmodified	_LLQTDDEEEAGLLELLK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.006778	1927.999	1.7224	0.0016621	0.74983	0.00072359	2.4722	0.0023857	965.50915585633	18.656	0.23054	18.656	18.612	18.843	0	231	94	1.16991841121525	0.0617945267758202	1.16991841121525	471.938166451817	0	24.9275465568962						1356	27	6	NaN	NaN	NaN	1.3462E-44	1	30251	249.97	217.92	1	945240			12489	1264	10511	10778	12489	12489		
LLQVASPFLEPHLVR	15	Unmodified	_LLQVASPFLEPHLVR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.669918	1717.98793	0.41974	0.00024079	-0.57827	-0.00033174	-0.15854	-9.0948E-05	573.669635805422	14.595	0.15962	14.595	14.542	14.701	0	621	40	0.908462957275599	0.0263793478580419	0.908462957275599	550.180219589813	0	15.9757701521456						583	19	5	NaN	NaN	NaN	0.0010393	1	25014	90.306	86.323	1	343380			12490	352	10512	10779	12490	12490		
LLQVASPFLEPHLVR	15	Unmodified	_LLQVASPFLEPHLVR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.001239	1717.98793	2.0818	0.0017904	0.18004	0.00015483	2.2619	0.0019452	860.001580963899	14.595	0.088671	14.595	14.56	14.648	0	240	37	1.16393748060522	0.0239319475635371	1.16393748060522	469.935417042647	0	9.66243457772816						318	11	4	NaN	NaN	NaN	3.1842E-05	1	25015	119.55	109.3	1	95654			12491	352	10512	10779	12491	12491		
LLQVVEEPQALAAFLR	16	Unmodified	_LLQVVEEPQALAAFLR_			0	0	0	Q9BQ67	Q9BQ67	Q9BQ67	GRWD1	Glutamate-rich WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.017086	1796.01962	0.83976	0.00075496	0.44777	0.00040256	1.2875	0.0011575	899.519096042264	19.286	0.062065	19.286	19.25	19.312	0	276	43	1.13998907770044	0.0279590228132265	1.13998907770044	460.106253630694	0	11.2844249944202						291	8	5	NaN	NaN	NaN	1.2258E-06	1	27119	91.245	77.446	1	110640			12492	2692	10513	10780	12492	12492		
LLQYSDALEHLLTTGQGVVLER	22	Unmodified	_LLQYSDALEHLLTTGQGVVLER_			0	0	0	O95299	O95299	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	819.111223	2454.31184	0.24812	0.00020324	-0.30328	-0.00024842	-0.055161	-4.5183E-05	819.445489049627	18.931	0.053194	18.931	18.914	18.967	0	489	58	0.997481546940468	0.0383521190755848	0.997481546940468	602.640009008474	0	23.1708761491343						283	7	4	NaN	NaN	NaN	8.5399E-09	1	36594	100.6	97.16	1	59554			12493	419	10514	10781	12493	12493		
LLREELQLLQEQGSYVGEVVR	21	Unmodified	_LLREELQLLQEQGSYVGEVVR_			0	0	1	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.114856	2457.32274	-0.38215	-0.00031341	-1.3883	-0.0011385	-1.7704	-0.0014519	820.447923749273	16.856	0.079822	16.856	16.821	16.901	0	549	46	0.957085760909907	0.030328287920973	0.957085760909907	578.230443376855	0	18.32305952889						364	10	4	NaN	NaN	NaN	6.3154E-06	1	36611	88.115	88.062	1	75494			12494	1369	10515	10782	12494	12494		
LLSALCILPQPEDMNER	17	Unmodified	_LLSALCILPQPEDMNER_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.00299	1997.99143	0.6235	0.0006235	0.88576	0.00088576	1.5093	0.0015093	1000.506478363	16.927	0.20399	16.927	16.83	17.034	0	189	40	1.1977968526266	0.0258675796217427	1.1977968526266	483.063187108749	0	10.4322159700679						579	24	4	NaN	NaN	NaN	5.4572E-05	1	31600	77.157	74.263	1	140740			12495	270	10516	10783	12495	12495		
LLSALCILPQPEDMNER	17	Unmodified	_LLSALCILPQPEDMNER_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.00299	1997.99143	0.34906	0.00034906	7.4664	0.0074664	7.8155	0.0078155	1000.51292592097	16.839	0.12412	16.839	16.759	16.883	0	183	28	1.20177511391933	0.0179034061988514	1.20177511391933	484.667570347945	0	7.22031957797049						158	15	3	NaN	NaN	NaN	0.012614	1	31601	47.57	46.391	1	36309			12496	270	10516	10783	12496	12496		
LLSALCPEEPPVHSSAQIVSK	21	Unmodified	_LLSALCPEEPPVHSSAQIVSK_			0	0	0	Q9NR50	Q9NR50	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.731466	2261.17257	0.85922	0.00064848	2.3717	0.00179	3.2309	0.0024385	755.067975068743	10.613	0.070918	10.613	10.578	10.649	0	555	34	0.953040030838688	0.0222561395374655	0.953040030838688	576.066879833184	0	13.452766353578						184	9	3	NaN	NaN	NaN	0.00024065	1	35290	80.128	74.512	1	37974			12497	3015	10517	10784	12497	12497		
LLSDATVEK	9	Unmodified	_LLSDATVEK_			0	0	0	Q14320	Q14320	Q14320	FAM50A	Protein FAM50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.27149	974.528426	0.41514	0.0002027	-1.4125	-0.00068969	-0.99737	-0.00048699	488.270978475789	4.9287	0.133	4.9287	4.8933	5.0263	0	735	37	0.831145085810763	0.0244772608396998	0.831145085810763	337.612642402864	0	9.94270777985059						205	16	3	NaN	NaN	NaN	0.032272	1	3730	40.502	30.423	1	77241			12498	1747	10518	10785	12498	12498		
LLSDFLDSEVSELR	14	Unmodified	_LLSDFLDSEVSELR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.917235	1621.81992	1.2227	0.00099272	-0.67043	-0.00054434	0.55225	0.00044838	811.917531076826	17.956	0.20394	17.956	17.867	18.071	0	375	43	1.07392668217569	0.0280941036643514	1.07392668217569	433.799607876898	0	11.3482711208537						584	24	6	NaN	NaN	NaN	1.1145E-07	1	22245	114.93	104.45	1	195750			12499	2687	10519	10786	12499	12499		
LLSDLCGTVMSTTDVEK	17	Unmodified	_LLSDLCGTVMSTTDVEK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.952634	1867.89072	2.4893	0.0023274	0.2168	0.00020269	2.7061	0.0025301	934.952720071445	13.531	0.23055	13.531	13.451	13.682	0	264	58	1.14797626962532	0.0379104952093297	1.14797626962532	463.193312286212	0	15.2963857451088						685	27	4	NaN	NaN	NaN	1.2366E-13	1	28879	126.32	114.84	1	213720			12500	1946	10520	10787	12500	12500		
LLSEEVFDFSSGQITQVK	18	Unmodified	_LLSEEVFDFSSGQITQVK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.02022	2026.02589	-0.14704	-0.0001491	-1.3922	-0.0014117	-1.5392	-0.0015608	1014.52089993814	16.386	0.088717	16.386	16.36	16.448	0	72	73	1.27517645957152	0.0475366696971509	1.27517645957152	514.220754404233	0	19.1693800258416						230	11	2	NaN	NaN	NaN	2.9886E-05	1	32081	75.012	68.807	1	47791			12501	135	10521	10788	12501	12501		
LLSEEVFDFSSGQITQVK	18	Unmodified	_LLSEEVFDFSSGQITQVK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.02022	2026.02589	1.1011	0.0011166	-1.9538	-0.0019812	-0.85265	-0.0008646	1014.51977521714	16.395	0.22168	16.395	16.307	16.528	0	174	82	1.20774045859593	0.0536734138547439	1.20774045859593	487.026879659017	0	21.6440503290855						1194	26	5	NaN	NaN	NaN	4.7081E-14	1	32082	133.13	124.38	1	377270			12502	135	10521	10788	12502	12502		
LLSEEVFDFSSGQITQVK	18	Unmodified	_LLSEEVFDFSSGQITQVK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.349239	2026.02589	0.16711	0.00011302	0.73414	0.00049654	0.90125	0.00060956	676.35032898352	16.395	0.16846	16.395	16.351	16.519	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	593.590734220759	0	13.436235352441						396	20	5	NaN	NaN	NaN	6.3488E-05	1	32083	133.07	119.86	1	149040			12503	135	10521	10788	12503	12503		
LLSEGADVNAK	11	Unmodified	_LLSEGADVNAK_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.798403	1115.58225	1.2792	0.00071484	0.75235	0.00042041	2.0316	0.0011353	558.798808763366	4.7337	0.097518	4.7337	4.6893	4.7869	0	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	366.723370019488	0	7.4083254241699						198	12	3	NaN	NaN	NaN	5.6697E-05	1	7148	76.572	35.547	1	80300			12504	2839	10522	10789	12504	12504		
LLSFMAPIDHTTMNDDAR	18	Unmodified	_LLSFMAPIDHTTMNDDAR_			0	0	0	Q9NY61	Q9NY61	Q9NY61	AATF	Protein AATF	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.324042	2046.9503	0.20859	0.00014254	-0.70406	-0.0004811	-0.49546	-0.00033856	683.658131913019	13.496	0.088666	13.496	13.46	13.549	0	657	46	0.884090832094921	0.0304884139621503	0.884090832094921	534.731543253529	0	18.440544859742						268	11	4	NaN	NaN	NaN	0.0015046	1	32476	55.782	43.764	1	70420			12505	3110	10523	10790	12505	12505		
LLSGGSVLDIIK	12	Unmodified	_LLSGGSVLDIIK_			0	0	0	O95747	O95747	O95747	OXSR1	Serine/threonine-protein kinase OSR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.871371	1213.72819	0.52902	0.00032158	-0.16287	-9.9005E-05	0.36615	0.00022257	607.871124114187	15.615	0.12414	15.615	15.571	15.695	0	510	55	0.983355730988811	0.036351175801219	0.983355730988811	398.343563895055	0	14.7253496004672						433	15	3	NaN	NaN	NaN	0.0048078	1	9844	48.785	24.664	1	131240			12506	449	10524	10791	12506	12506		
LLSHGVPLPNWLINSYK	17	Unmodified	_LLSHGVPLPNWLINSYK_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.031516	1950.07272	-0.70375	-0.00045816	-1.1238	-0.00073162	-1.8275	-0.0011898	651.364872154982	16.058	0.13299	16.058	15.987	16.12	0	720	49	0.841341816837976	0.0326000897704161	0.841341816837976	509.045435948019	0	19.7243576594053						526	16	3	NaN	NaN	NaN	0.0020766	1	30727	53.051	48.234	1	124910			12507	1593	10525	10792	12507	12507		
LLSHSLLVTLASHLPSDFTPAVHASLDK	28	Unmodified	_LLSHSLLVTLASHLPSDFTPAVHASLDK_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	743.157828	2968.60221	0.58504	0.00043478	1.2307	0.0009146	1.8157	0.0013494	743.409474433717	18.009	0.24828	18.009	17.92	18.169	0	465	91	1.01360860968299	0.0603680492797458	1.01360860968299	815.71307239617	0	48.5818751756121						1104	29	7	NaN	NaN	NaN	3.7899E-21	1	38170	157.58	156.03	1	561610		+	12508	25	10526	10793	12508	12508		
LLSHSLLVTLASHLPSDFTPAVHASLDK	28	Unmodified	_LLSHSLLVTLASHLPSDFTPAVHASLDK_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	990.541345	2968.60221	1.1499	0.001139	1.0535	0.0010435	2.2033	0.0021825	990.876988522805	18.009	0.14187	18.009	17.965	18.107	0	243	40	1.16194328902838	0.0259351883053607	1.16194328902838	701.316431448235	0	15.6537534000156						405	17	5	NaN	NaN	NaN	0.0065903	1	38171	18.481	16.418	1	81229		+	12509	25	10526	10793	12509	12509		
LLSISGK	7	Unmodified	_LLSISGK_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	359.228897	716.44324	-1.1047	-0.00039683	-0.4209	-0.0001512	-1.5256	-0.00054803	359.228712655606	5.8421	0.17745	5.8421	5.7889	5.9663	0	873	31	0.737001551771189	0.0205316342299018	0.737001551771189	300.867083528307	0	8.38165522986355						283	21	3	NaN	NaN	NaN	0.0092387	1	439	66.087	0	1	99890			12510	547	10527	10794	12510	12510		
LLSLGAQANFFHPEK	15	Unmodified	_LLSLGAQANFFHPEK_			0	0	0	Q9Y2X7;Q14161	Q9Y2X7	Q9Y2X7	GIT1;GIT2	ARF GTPase-activating protein GIT1;ARF GTPase-activating protein GIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.966623	1670.87804	-0.57942	-0.0003233	-1.1299	-0.00063046	-1.7093	-0.00095376	558.300188486124	13.034	0.10639	13.034	12.981	13.088	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	533.077748765786	0	9.85325575685681						139	13	3	NaN	NaN	NaN	0.058243	1	23649	13.778	12.726	1	26670			12511	1731	10528	10795	12511	12511		
LLSLGAQANFFHPEK	15	Unmodified	_LLSLGAQANFFHPEK_			0	0	0	Q9Y2X7;Q14161	Q9Y2X7	Q9Y2X7	GIT1;GIT2	ARF GTPase-activating protein GIT1;ARF GTPase-activating protein GIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.446297	1670.87804	1.5056	0.0012594	0.89321	0.00074713	2.3988	0.0020065	836.446985624485	13.043	0.079791	13.043	13.008	13.088	0	201	25	1.18983705239708	0.0159239736524159	1.18983705239708	480.500657787461	0	6.43069553025038						154	10	3	NaN	NaN	NaN	0.00022345	1	23651	58.313	56.011	1	27387			12512	1731	10528	10795	12512	12512		
LLSLISIALPENK	13	Unmodified	_LLSLISIALPENK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.93196	1409.84937	0.77409	0.00054645	0.35285	0.00024909	1.1269	0.00079554	705.932569874543	17.974	0.133	17.974	17.912	18.045	0	435	79	1.03374239103424	0.0523117394777037	1.03374239103424	418.098899152256	0	21.1575735677102						639	16	3	NaN	NaN	NaN	2.3418E-05	1	15757	120.65	106.66	1	175550			12513	2149	10529	10796	12513	12513		
LLSMGQLDLLR	11	Unmodified	_LLSMGQLDLLR_			0	0	0	Q9H1D9	Q9H1D9	Q9H1D9	POLR3F	DNA-directed RNA polymerase III subunit RPC6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.863023	1257.71149	-0.15495	-9.7598E-05	-1.5912	-0.0010022	-1.7461	-0.0010998	629.862014519642	16.289	0.079799	16.289	16.253	16.333	0	552	31	0.955063035883597	0.0202314531592178	0.955063035883597	386.730445627968	0	8.19225391623189						157	10	3	NaN	NaN	NaN	0.00062087	1	11153	69.915	33.704	1	36291			12514	2856	10530	10797	12514	12514		
LLSNDEVTIK	10	Unmodified	_LLSNDEVTIK_			0	0	0	Q92734	Q92734	Q92734	TFG	Protein TFG	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.316428	1130.6183	1.2617	0.00071454	-0.66553	-0.0003769	0.5962	0.00033764	566.315950279908	7.6334	0.18628	7.6334	7.589	7.7753	0	624	34	0.906433495720521	0.0223240803246195	0.906433495720521	367.486748339152	0	9.05064047929443						344	22	4	NaN	NaN	NaN	0.0024953	1	7554	67.881	41.658	1	143990			12515	2429	10531	10798	12515	12515		
LLSNMEAQHNDLEFK	15	Unmodified	_LLSNMEAQHNDLEFK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.957688	1787.85123	0.15879	9.4793E-05	-0.62852	-0.0003752	-0.46973	-0.00028041	596.95760898964	9.1947	0.071022	9.1947	9.1592	9.2303	0	651	28	0.888155670855968	0.0182879696480781	0.888155670855968	537.713724783247	0	11.0720368071441						154	9	4	NaN	NaN	NaN	3.3552E-05	1	26917	80.623	62.116	1	35330			12516	1668	10532	10799	12516	12516		
LLSPVVPQISAPQSNK	16	Unmodified	_LLSPVVPQISAPQSNK_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.480337	1676.94612	2.1683	0.0018202	0.091661	7.6948E-05	2.26	0.0018972	839.982091126674	12.183	0.24832	12.183	12.041	12.29	0	297	82	1.12600091227925	0.0540287050833896	1.12600091227925	454.707708548726	0	21.818160550682						980	29	3	NaN	NaN	NaN	0.0028643	1	23833	61.042	57.939	1	341780			12517	2239	10533	10800	12517	12517		
LLSPYSPQTQETDSAVQK	18	Unmodified	_LLSPYSPQTQETDSAVQK_			0	0	0	Q9P265	Q9P265	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.499652	1990.98475	2.2629	0.002255	-1.5995	-0.0015939	0.66342	0.0006611	996.999252294026	8.1745	0.11526	8.1745	8.1036	8.2188	0	213	37	1.18187287897418	0.0238990877205962	1.18187287897418	476.652740107379	0	9.63857099248798						254	14	3	NaN	NaN	NaN	1.5066E-10	1	31478	104	89.024	1	47452			12518	3152	10534	10801	12518	12518		
LLSRPQDALEGVVLSPSLEAR	21	Unmodified	_LLSRPQDALEGVVLSPSLEAR_			0	0	1	Q9NVI7	Q9NVI7	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.753258	2249.23795	1.12	0.00084083	2.0184	0.0015153	3.1383	0.0023561	750.755384855644	14.657	0.12416	14.657	14.586	14.71	0	393	79	1.0618830335572	0.0522468033010759	1.0618830335572	641.878026304222	0	31.581703373918						606	15	4	NaN	NaN	NaN	0.051452	1	35176	28.664	18.753	1	132520			12519	3068	10535	10802	12519	12519		
LLSSAFDEVYPALPSDVQTAIK	22	Unmodified	_LLSSAFDEVYPALPSDVQTAIK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1182.6203	2363.22604	0.9894	0.0011701	-2.1152	-0.0025015	-1.1258	-0.0013314	1183.11953612436	17.787	0.10639	17.787	17.734	17.841	0	69	52	1.27715511956461	0.0336510508969117	1.27715511956461	514.518224466941	0	13.556754926393						480	13	4	NaN	NaN	NaN	3.8895E-08	1	36159	54.261	45.13	1	85705			12520	74	10536	10803	12520	12520		
LLSSDRNPPIDDLIK	15	Unmodified	_LLSSDRNPPIDDLIK_			0	0	1	O00505;O00629	O00505;O00629	O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.98071	1694.9203	-1.0404	-0.00058887	-0.80056	-0.0004531	-1.841	-0.001042	566.314593862218	11.483	0.30162	11.483	11.332	11.633	0	768	58	0.808687310729125	0.0388177002562179	0.808687310729125	489.807717062975	0	23.5112000545556						1018	35	4	NaN	NaN	NaN	0.005407	1	24351	40.224	33.477	1	300790			12521	96;87	10537	10804	12521	12521		
LLSSEDIEGMR	11	Unmodified	_LLSSEDIEGMR_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.308277	1248.602	0.60115	0.00037591	-0.01338	-8.3668E-06	0.58777	0.00036754	625.308666630937	9.443	0.14186	9.443	9.3898	9.5317	0	597	43	0.924688525662974	0.0283711492854036	0.924688525662974	374.460655668322	0	11.4891434992762						306	17	3	NaN	NaN	NaN	0.00056561	1	10872	85.716	68.32	1	89665			12522	1236	10538	10805	12522	12522		
LLSSFDFFLTDAR	13	Unmodified	_LLSSFDFFLTDAR_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.393199	1530.77184	1.411	0.0010814	-0.74244	-0.000569	0.66861	0.00051242	766.392799384459	18.967	0.1596	18.967	18.922	19.082	0	411	52	1.04982941439551	0.0341684265404665	1.04982941439551	424.27935016034	0	13.8088699076295						574	19	4	NaN	NaN	NaN	2.2759E-07	1	19463	135.28	120.13	1	264010			12523	378	10539	10806	12523	12523		
LLSSYLQK	8	Unmodified	_LLSSYLQK_			0	0	0	P23919	P23919	P23919	DTYMK	Thymidylate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.279118	950.543683	0.081503	3.8818E-05	-7.2453	-0.0034508	-7.1638	-0.003412	476.275378545761	7.8285	0.1508	7.8285	7.7931	7.9438	-1.7764E-15	717	40	0.84338031290707	0.0264967721372047	0.84338031290707	342.702895088576	0	10.7668158515848						275	18	2	NaN	NaN	NaN	0.032689	1	3264	36.57	21.071	1	95296			12524	827	10540	10807	12524	12524		
LLSTDPVAAK	10	Unmodified	_LLSTDPVAAK_			0	0	0	Q10567	Q10567	Q10567	AP1B1	AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.795132	1013.57571	0.35609	0.00018082	-2.8161	-0.00143	-2.46	-0.0012492	507.793722748062	6.0638	0.15074	6.0638	6.0195	6.1702	0	723	67	0.839303037468863	0.0448189089977539	0.839303037468863	340.743608718724	0	18.1957601830998						321	18	3	NaN	NaN	NaN	0.052154	1	4599	22.044	13.281	1	76118			12525	1587	10541	10808	12525	12525		
LLSVVPVPEGYSVK	14	Unmodified	_LLSVVPVPEGYSVK_			0	0	0	Q9GZN8	Q9GZN8	Q9GZN8	C20orf27	UPF0687 protein C20orf27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.929417	1485.84428	1.1467	0.00085303	0.32335	0.00024055	1.47	0.0010936	743.929700902797	13.655	0.088664	13.655	13.611	13.7	0	399	58	1.0578662689527	0.038151386180588	1.0578662689527	427.643206663398	0	15.4227255407932						370	11	3	NaN	NaN	NaN	0.00018393	1	18110	72.922	60.326	1	109580			12526	2825	10542	10809	12526	12526		
LLSYASYCIEHGDLELAAK	19	Unmodified	_LLSYASYCIEHGDLELAAK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.357628	2152.05106	0.80775	0.00058025	0.32555	0.00023386	1.1333	0.00081411	718.357617905813	13.061	0.11526	13.061	12.999	13.114	0	519	55	0.97729762293174	0.0363360970921059	0.97729762293174	590.912182966299	0	21.9702186410326						368	14	4	NaN	NaN	NaN	0.0089766	1	34064	39.82	39.698	1	71690			12527	1915	10543	10810	12527	12527		
LLTATNLVTLPNSR	14	Unmodified	_LLTATNLVTLPNSR_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.940847	1511.86714	2.0864	0.0015793	9.9529	0.0075338	12.039	0.0091131	756.948383630217	14.506	0.2128	14.506	14.444	14.657	0	285	34	1.13399579921816	0.0219814046771438	1.13399579921816	458.34576738239	0	8.88458652301421						477	25	4	NaN	NaN	NaN	0.066587	1	18874	40.386	14.53	1	176180			12528	402	10544	10811	12528	12528		
LLTDCNTETFQK	12	Unmodified	_LLTDCNTETFQK_			0	0	0	Q5VIR6	Q5VIR6	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.350674	1468.68679	1.7187	0.0012639	0.53537	0.00039368	2.2541	0.0016576	735.35255241218	7.2255	0.15961	7.2255	7.1723	7.3319	0	462	67	1.01562323939346	0.0442821075233106	1.01562323939346	410.610685501181	0	17.903003614256						324	19	4	NaN	NaN	NaN	0.032882	1	17535	28.328	22.462	1	76122			12529	2006	10545	10812	12529	12529		
LLTDILGIEDYNGDMDFK	18	Unmodified	_LLTDILGIEDYNGDMDFK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1036.49826	2070.98197	0.36006	0.0003732	1.6629	0.0017236	2.023	0.0020968	1037.0010265353	19.082	0.0532	19.082	19.055	19.109	0	153	43	1.22165005014568	0.0278134637281793	1.22165005014568	492.563187962893	0	11.2142494166874						199	7	4	NaN	NaN	NaN	0.00065491	1	32886	49.487	44.932	1	31815			12530	2345	10546	10813	12530	12530		
LLTECPPMMDTEYTK	15	Unmodified	_LLTECPPMMDTEYTK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.911923	1827.80929	2.3363	0.0021375	0.27175	0.00024863	2.6081	0.0023861	915.414243120339	11.509	0.29272	11.509	11.385	11.678	0	261	82	1.14997238118939	0.0539321328364528	1.14997238118939	464.073718971221	0	21.7644230999499						2034	34	6	NaN	NaN	NaN	1.9287E-12	1	27909	166.71	161.33	1	900010			12531	1264	10547	10814	12531	12531		
LLTECPPMMDTEYTK	15	Oxidation (M)	_LLTECPPMM(Oxidation (M))DTEYTK_	LLTECPPM(0.269)M(0.731)DTEYTK	LLTECPPM(-4.4)M(4.4)DTEYTK	0	1	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.909381	1843.80421	2.5353	0.0023399	-0.84319	-0.00077819	1.6921	0.0015617	923.410168290739	9.1326	0.13303	9.1326	9.0794	9.2125	0	288	67	1.13199748998575	0.0439477106737494	1.13199748998575	456.790072886032	0	17.73403045451						546	16	3	NaN	NaN	NaN	1.3553E-05	1	28318	83.214	78.397	2	119160			12532	1264	10547	10815	12532	12532	446;447	
LLTECPPMMDTEYTK	15	Oxidation (M)	_LLTECPPM(Oxidation (M))MDTEYTK_	LLTECPPM(0.732)M(0.268)DTEYTK	LLTECPPM(4.4)M(-4.4)DTEYTK	0	1	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.909381	1843.80421	2.5904	0.0023907	-0.82425	-0.00076071	1.7661	0.00163	922.908570064966	9.6292	0.16846	9.6292	9.5938	9.7622	0	264	52	1.14797626962532	0.0339385748155798	1.14797626962532	463.237920965663	0	13.6950869578847						458	20	5	NaN	NaN	NaN	1.6183E-05	1	28319	87.573	78.417	2	136780			12533	1264	10547	10815	12533	12533	446;447	
LLTETEDWLYEEGEDQAK	18	Unmodified	_LLTETEDWLYEEGEDQAK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.99714	2167.97972	1.7248	0.0018714	-0.058448	-6.3416E-05	1.6664	0.001808	1085.4985009062	14.524	0.11528	14.524	14.48	14.595	0	147	70	1.22562176648663	0.045671634018799	1.22562176648663	494.01728864532	0	18.4090862474208						748	14	5	NaN	NaN	NaN	3.6016E-19	1	34278	111.38	107.31	1	225790			12534	2415	10548	10816	12534	12534		
LLTETEDWLYEEGEDQAK	18	Unmodified	_LLTETEDWLYEEGEDQAK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.667185	2167.97972	1.0786	0.00078054	0.6427	0.0004651	1.7213	0.0012456	724.001536649249	14.524	0.079811	14.524	14.498	14.577	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	592.105465023941	0	12.210163998875						239	10	4	NaN	NaN	NaN	0.00097032	1	34279	91.245	89.534	1	68215			12535	2415	10548	10816	12535	12535		
LLTFMGMAVENK	12	Unmodified	_LLTFMGMAVENK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.348891	1352.68323	1.1766	0.00079694	-0.087327	-5.9151E-05	1.0892	0.00073779	677.349476440112	14.976	0.18623	14.976	14.914	15.101	0	453	43	1.02166545906632	0.0281911902363581	1.02166545906632	413.383952098386	0	11.4066552126694						679	22	5	NaN	NaN	NaN	5.3068E-08	1	13967	159.11	135.54	1	308390			12536	2115	10549	10817	12536	12536		
LLTFYNLADCIAEK	14	Unmodified	_LLTFYNLADCIAEK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.926548	1669.83854	2.1093	0.0017632	-0.85307	-0.0007131	1.2562	0.0010501	835.926213835563	17.548	0.23055	17.548	17.45	17.681	0	345	58	1.09397730668811	0.0380516101948882	1.09397730668811	441.791179214779	0	15.3667408238236						582	27	3	NaN	NaN	NaN	2.4381E-06	1	23620	121.71	104.72	1	225930			12537	2900	10550	10818	12537	12537		
LLTGELLPTDGMIR	14	Oxidation (M)	_LLTGELLPTDGM(Oxidation (M))IR_	LLTGELLPTDGM(1)IR	LLTGELLPTDGM(50)IR	0	1	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.921266	1543.82798	1.6897	0.001306	-0.86216	-0.00066638	0.82759	0.00063966	772.92109792407	13.646	0.15073	13.646	13.575	13.726	0	378	58	1.07192009927972	0.038135606006148	1.07192009927972	433.174271161174	0	15.4110025067195						446	18	3	NaN	NaN	NaN	0.017427	1	19858	50.09	38.734	1	135070			12538	3202	10551	10819	12538	12538	638	
LLTHNLLSSHVR	12	Unmodified	_LLTHNLLSSHVR_			0	0	0	Q9UI30	Q9UI30	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.936887	1388.78883	-1.2794	-0.00059355	0.45609	0.0002116	-0.82329	-0.00038196	463.937385513675	6.1791	0.062076	6.1791	6.1525	6.2146	0	774	22	0.804600385996946	0.0143072230251827	0.804600385996946	488.201437955881	0	8.68108812226723						110	8	3	NaN	NaN	NaN	0.00015457	1	15117	71.066	65.2	1	29420			12539	3234	10552	10820	12539	12539		
LLTNFLPLK	9	Unmodified	_LLTNFLPLK_			0	0	0	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.83406	1057.65357	-0.47815	-0.00025334	-1.944	-0.00103	-2.4222	-0.0012834	529.833068231125	15.597	0.15073	15.597	15.562	15.712	0	678	28	0.869855008346864	0.0183108263146563	0.869855008346864	352.950006186999	0	7.42975116431114						228	18	3	NaN	NaN	NaN	0.010429	1	5672	56.014	34.739	1	64728			12540	9	10553	10821	12540	12540		
LLTQGFTNWNK	11	Unmodified	_LLTQGFTNWNK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.348594	1320.68264	1.0586	0.00070008	-1.5163	-0.0010028	-0.45778	-0.00030275	661.347868677006	11.465	0.20401	11.465	11.341	11.545	0	519	37	0.97729762293174	0.0242341119852805	0.97729762293174	395.528844387265	0	9.80795418240672						560	24	6	NaN	NaN	NaN	0.00086114	1	13005	65.404	34.811	1	204170			12541	251	10554	10822	12541	12541		
LLTQHENIK	9	Unmodified	_LLTQHENIK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.31148	1094.60841	1.6197	0.00088808	0.73979	0.00040564	2.3595	0.0012937	548.312045345636	3.1286	0.079799	3.1286	3.102	3.1818	0	615	25	0.912521036363781	0.0162300673431094	0.912521036363781	370.101331983826	0	6.58260938926713						132	10	3	NaN	NaN	NaN	0.0016114	1	6577	93.467	69.892	1	30439			12542	1511	10555	10823	12542	12542		
LLTQYILNLGK	11	Unmodified	_LLTQYILNLGK_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.387188	1274.75982	0.48744	0.00031118	-0.67677	-0.00043204	-0.18932	-0.00012086	638.386609701609	16.236	0.09753	16.236	16.191	16.289	0	534	49	0.967195187796614	0.0323300376824983	0.967195187796614	391.586187977518	0	13.0893912345655						303	12	4	NaN	NaN	NaN	0.00028957	1	11633	114.64	103.28	1	105920			12543	61	10556	10824	12543	12543		
LLTSFLPAQLLR	12	Unmodified	_LLTSFLPAQLLR_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.421562	1370.82857	0.94638	0.00064962	0.33014	0.00022661	1.2765	0.00087623	686.422101073434	18.577	0.27484	18.577	18.515	18.789	0	489	94	0.997481546940468	0.0625572530905663	0.997481546940468	403.54466943533	0	25.3083839963222						1528	32	5	NaN	NaN	NaN	1.2906E-16	1	14522	174.8	138.59	1	1863600			12544	576	10557	10825	12544	12544		
LLTSLFQDLQVEALHK	16	Unmodified	_LLTSLFQDLQVEALHK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.015643	1854.0251	-0.054984	-3.4036E-05	-0.66822	-0.00041364	-0.72321	-0.00044768	619.015255305894	17.743	0.1064	17.743	17.699	17.805	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	536.336093423913	0	11.0720701954673						282	13	4	NaN	NaN	NaN	9.7902E-13	1	28578	233	220.98	1	86652			12545	1991	10558	10826	12545	12545		
LLTVQHPLEESR	12	Unmodified	_LLTVQHPLEESR_			0	0	0	Q6P3W7	Q6P3W7	Q6P3W7	SCYL2	SCY1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.596419	1420.76743	-1.2583	-0.00059718	0.66026	0.00031336	-0.59802	-0.00028382	474.596750921928	6.5693	0.070941	6.5693	6.5427	6.6136	0	768	16	0.808687310729125	0.0102166013613212	0.808687310729125	490.572496901648	0	6.19767810521631						82	9	2	NaN	NaN	NaN	0.0086894	1	16120	46.033	40.882	1	22543			12546	2065	10559	10827	12546	12546		
LLTVQHPLEESR	12	Unmodified	_LLTVQHPLEESR_			0	0	0	Q6P3W7	Q6P3W7	Q6P3W7	SCYL2	SCY1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.39099	1420.76743	1.7216	0.0012247	-1.2698	-0.0009033	0.45179	0.0003214	711.390164574997	6.5781	0.070941	6.5781	6.5427	6.6136	0	450	25	1.02367897599655	0.016107024389808	1.02367897599655	413.997832496796	0	6.51402768027157						114	9	3	NaN	NaN	NaN	0.015997	1	16121	46.033	39.769	1	26327			12547	2065	10559	10827	12547	12547		
LLVAHPMK	8	Oxidation (M)	_LLVAHPM(Oxidation (M))K_	LLVAHPM(1)K	LLVAHPM(47)K	0	1	0		REV__Q6P2Q9	REV__Q6P2Q9			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.770406	923.526258	0.12703	5.8784E-05	-8.1587	-0.0037756	-8.0317	-0.0037168	462.766953722649	6.25	0.19509	6.25	6.2146	6.4096	0	681	37	0.867820189810857	0.0244229125119191	0.867820189810857	352.780915916463	0	9.92825189649056						310	23	3	NaN	NaN	NaN	0.057407	1	2774	46.802	36.723	1	105740	+		12548	3498	10560	10828	12548	12548	655	
LLVDADNCLHR	11	Unmodified	_LLVDADNCLHR_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.559199	1324.65577	-1.8863	-0.00083478	0.69568	0.00030788	-1.1906	-0.0005269	442.559436115234	6.9949	0.11534	6.9949	6.9594	7.0747	0	831	28	0.76571780291124	0.0184437299507298	0.76571780291124	464.830286312596	0	11.1962974363073						221	14	4	NaN	NaN	NaN	0.027882	1	13129	28.096	26.946	1	53260			12549	3129	10561	10829	12549	12549		
LLVDADNCLHR	11	Unmodified	_LLVDADNCLHR_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.335161	1324.65577	1.457	0.00096648	1.8367	0.0012184	3.2937	0.0021848	663.336379812716	6.9949	0.097705	6.9949	6.9683	7.066	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	411.027088624002	0	8.1527308219658						241	12	3	NaN	NaN	NaN	0.0022819	1	13130	63.397	52.695	1	64020			12550	3129	10561	10829	12550	12550		
LLVDVDESTLSPEEQK	16	Unmodified	_LLVDVDESTLSPEEQK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.456921	1800.89929	1.4334	0.0012921	-1.4362	-0.0012946	-0.0028015	-2.5254E-06	901.456991605724	11.997	0.23943	11.997	11.917	12.157	0	288	67	1.13199748998575	0.0439719025155401	1.13199748998575	456.871323514016	0	17.7469486261466						1073	28	5	NaN	NaN	NaN	8.8672E-18	1	27237	179.98	169.01	1	461600			12551	343	10562	10830	12551	12551		
LLVFSTDAGFHFAGDGK	17	Unmodified	_LLVFSTDAGFHFAGDGK_			0	0	0	P05556	P05556	P05556	ITGB1	Integrin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.633421	1780.87843	-1.0109	-0.00060111	2.2452	0.0013351	1.2343	0.00073397	594.969491671595	14.834	0.13298	14.834	14.79	14.923	0	633	37	0.900343422309015	0.0243721251806781	0.900343422309015	545.108917669356	0	14.7559947119619						290	16	4	NaN	NaN	NaN	2.568E-05	1	26703	50.314	40.064	1	58856			12552	535	10563	10831	12552	12552		
LLVGNDDVHIIAR	13	Unmodified	_LLVGNDDVHIIAR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.940297	1433.79906	-1.0221	-0.00048952	-0.92483	-0.00044294	-1.9469	-0.00093246	478.939967421968	10.135	0.079802	10.135	10.099	10.179	0	774	49	0.804600385996946	0.0326863119165151	0.804600385996946	488.050549042712	0	19.826702490666						274	10	3	NaN	NaN	NaN	0.00024992	1	16506	72.922	64.448	1	76205			12553	2149	10564	10832	12553	12553		
LLVGNDDVHIIAR	13	Unmodified	_LLVGNDDVHIIAR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.906808	1433.79906	2.0979	0.0015061	0.17525	0.00012582	2.2731	0.0016319	717.90651906444	10.135	0.070944	10.135	10.099	10.17	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.65804194566	0	7.30492287090624						167	9	3	NaN	NaN	NaN	8.0947E-05	1	16507	64.906	56.432	1	46042			12554	2149	10564	10832	12554	12554		
LLVGSEDYGR	10	Unmodified	_LLVGSEDYGR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.785296	1107.55604	0.96705	0.00053651	0.10369	5.7525E-05	1.0707	0.00059403	554.785238735941	7.0481	0.25724	7.0481	6.9683	7.2255	0	609	46	0.916577990479294	0.0304124071077684	0.916577990479294	371.692728700025	0	12.3329064211017						686	30	4	NaN	NaN	NaN	4.872E-05	1	6918	99.305	85.657	1	238160			12555	1703	10565	10833	12555	12555		
LLVGVDEK	8	Unmodified	_LLVGVDEK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.758018	871.501483	-2.5869	-0.0011299	-1.1613	-0.00050721	-3.7482	-0.0016371	436.757528995253	6.6491	0.20393	6.6491	6.5515	6.7555	0	783	28	0.798467866007927	0.0184026828244152	0.798467866007927	324.872042943319	0	7.48748624624841						223	24	2	NaN	NaN	NaN	0.044662	1	1883	47.349	33.701	1	57237			12556	1235	10566	10834	12556	12556		
LLVILATEQPLTAK	14	Unmodified	_LLVILATEQPLTAK_			0	0	0	Q9H173	Q9H173	Q9H173	SIL1	Nucleotide exchange factor SIL1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.466167	1508.91778	1.0304	0.0007784	0.77152	0.00058286	1.8019	0.0013613	755.466655087138	14.959	0.079803	14.959	14.932	15.012	0	375	22	1.07392668217569	0.0140441447605724	1.07392668217569	434.074375679066	0	5.6765545265543						140	10	3	NaN	NaN	NaN	6.3957E-05	1	18777	96.957	91.806	1	33195			12557	2854	10567	10835	12557	12557		
LLVLDVDYTLFDHR	14	Unmodified	_LLVLDVDYTLFDHR_			0	0	0	Q8WVY7	Q8WVY7	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.641917	1717.90392	-1.07	-0.00061379	0.35264	0.00020229	-0.71735	-0.0004115	573.642182905453	17.672	0.044316	17.672	17.654	17.699	0	678	16	0.869855008346864	0.0101726805997341	0.869855008346864	526.79880801402	0	6.16074628854733						42	6	2	NaN	NaN	NaN	0.0036756	1	25000	31.04	28.369	1	7446.5			12558	2384	10568	10836	12558	12558		
LLVLYSGEDDELLQR	15	Unmodified	_LLVLYSGEDDELLQR_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.964716	1761.91488	2.2171	0.0019554	-0.013629	-1.202E-05	2.2034	0.0019434	882.465809324479	15.083	0.15074	15.083	15.047	15.198	0	303	46	1.12200181823275	0.0299911493699134	1.12200181823275	452.913646847724	0	12.1063982371057						409	18	4	NaN	NaN	NaN	1.1583E-06	1	26203	115.04	101.24	1	163430			12559	2886	10569	10837	12559	12559		
LLVPAAEGEDSLK	13	Unmodified	_LLVPAAEGEDSLK_			0	0	0	Q96PU8	Q96PU8	Q96PU8	QKI	Protein quaking	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.36665	1340.71875	2.2372	0.001502	-1.6503	-0.001108	0.58691	0.00039403	671.366272129528	9.8243	0.15074	9.8243	9.7711	9.9218	0	471	55	1.00957851518677	0.0362758759796945	1.00957851518677	408.530236978324	0	14.6791873912245						436	18	3	NaN	NaN	NaN	0.0098049	1	13633	53.028	45.381	1	138940			12560	2598	10570	10838	12560	12560		
LLVPILLPEK	10	Unmodified	_LLVPILLPEK_			0	0	0	O75352	O75352	O75352	MPDU1	Mannose-P-dolichol utilization defect 1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.878468	1133.74238	-0.45807	-0.00026013	-1.2423	-0.00070548	-1.7004	-0.00096561	567.877647334792	16.803	0.20406	16.803	16.723	16.927	0	627	61	0.90440375274676	0.0406033237034125	0.90440375274676	366.651679801477	0	16.4608746880641						918	24	4	NaN	NaN	NaN	0.0011115	1	7644	65.404	53.337	1	458030			12561	323	10571	10839	12561	12561		
LLVPLVPDLQDVAQLR	16	Unmodified	_LLVPLVPDLQDVAQLR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.02425	1788.05092	-0.42763	-0.0002553	0.86222	0.00051477	0.43459	0.00025946	597.025038685662	19.747	0.044312	19.747	19.72	19.765	0	636	22	0.898312834727904	0.0142160854587913	0.898312834727904	543.862676306042	0	8.60679930789979						106	6	4	NaN	NaN	NaN	0.0058095	1	26931	60	49.75	1	22613			12562	2726	10572	10840	12562	12562		
LLVPLVPDLQDVAQLR	16	Unmodified	_LLVPLVPDLQDVAQLR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.032736	1788.05092	1.9325	0.0017296	-0.2508	-0.00022447	1.6817	0.0015051	895.533827286951	19.738	0.097561	19.738	19.694	19.791	0	273	76	1.14198628764525	0.0499371538919759	1.14198628764525	460.92807984253	0	20.1556154441143						559	12	5	NaN	NaN	NaN	1.5232E-05	1	26932	76.255	70.227	1	209840			12563	2726	10572	10840	12563	12563		
LLVPTQFVGAIIGK	14	Unmodified	_LLVPTQFVGAIIGK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.45032	1454.88609	0.29011	0.00021133	0.041349	3.012E-05	0.33146	0.00024145	728.450564709885	19.082	0.14185	19.082	19.02	19.162	0	453	61	1.02166545906632	0.0402564573551203	1.02166545906632	413.090088198563	0	16.2768970721451						537	17	5	NaN	NaN	NaN	0.0049848	1	17107	54.584	0	1	273770			12564	78	10573	10841	12564	12564		
LLVPTQYVGAIIGK	14	Unmodified	_LLVPTQYVGAIIGK_			0	0	0	Q9NZI8	Q9NZI8	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.447777	1470.881	0.42173	0.00031058	1.208	0.0008896	1.6297	0.0012002	736.448973165299	17.131	0.133	17.131	17.069	17.202	0	432	37	1.035754240522	0.0241371995197355	1.035754240522	418.743701711976	0	9.75839622994027						348	16	3	NaN	NaN	NaN	0.00029808	1	17625	76.85	71.699	1	94615			12565	3132	10574	10842	12565	12565		
LLVPYLMEAIR	11	Unmodified	_LLVPYLMEAIR_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.383591	1316.75263	0.52979	0.00034933	-1.9331	-0.0012747	-1.4033	-0.00092533	659.382657117182	18.488	0.14194	18.488	18.435	18.577	0	522	43	0.975277694896658	0.028284867590345	0.975277694896658	394.723544664534	0	11.4477171517913						522	17	5	NaN	NaN	NaN	0.0015227	1	12893	43.272	16.816	1	210410			12566	1910	10575	10843	12566	12566		
LLVQHEINTLR	11	Unmodified	_LLVQHEINTLR_			0	0	0	P49792;A6NKT7;Q7Z3J3;Q99666;O14715	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4;RGPD5;RGPD8	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.390793	1334.76703	1.8138	0.0012123	0.28692	0.00019177	2.1007	0.0014041	668.390904530703	7.8197	0.088675	7.8197	7.7842	7.8729	0	456	31	1.01965166402748	0.02014212547595	1.01965166402748	412.62514224122	0	8.15096731831585						190	11	3	NaN	NaN	NaN	0.00068555	1	13445	92.428	69.375	1	51127			12567	1151;19	10576	10844	12567	12567		
LLVSHGAEVTCK	12	Unmodified	_LLVSHGAEVTCK_			0	0	0	O15084	O15084	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.347737	1312.68092	1.9821	0.0013029	-0.13623	-8.9552E-05	1.8458	0.0012134	657.347721882727	4.2283	0.0532	4.2283	4.2105	4.2637	0	459	19	1.01763759082241	0.012085274363222	1.01763759082241	411.881097768284	0	4.89142315146989						49	7	2	NaN	NaN	NaN	0.00048066	1	12738	51.531	40.829	1	9254.6			12568	142	10577	10845	12568	12568		
LLVTDMSDAEQYR	13	Unmodified	_LLVTDMSDAEQYR_			0	0	0	O14929	O14929	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.869231	1539.72391	2.5501	0.0019658	-0.4073	-0.00031397	2.1429	0.0016519	770.869216666177	10.844	0.26598	10.844	10.773	11.039	0	396	58	1.05987478976334	0.0381671761516003	1.05987478976334	428.316778909507	0	15.424125667689						738	31	3	NaN	NaN	NaN	8.446E-17	1	19712	156.57	143.98	1	368090			12569	126	10578	10846	12569	12569		
LLVVDPETDEHFK	13	Unmodified	_LLVVDPETDEHFK_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.599718	1540.77732	-0.049031	-2.5232E-05	-0.67434	-0.00034702	-0.72337	-0.00037225	514.59935680078	9.7622	0.16853	9.7622	9.709	9.8776	0	753	37	0.81889964927511	0.024501095294577	0.81889964927511	496.394885501235	0	14.85190328775						433	20	4	NaN	NaN	NaN	0.00029381	1	19743	83.438	74.964	1	147490			12570	1856	10579	10847	12570	12570		
LLVVDPETDEHFK	13	Unmodified	_LLVVDPETDEHFK_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.395938	1540.77732	2.4739	0.0019084	-2.3577	-0.0018187	0.11619	8.9631E-05	771.393752180199	9.7622	0.10639	9.7622	9.7179	9.8243	0	420	43	1.04379886199097	0.0281484102411274	1.04379886199097	421.817609642619	0	11.3752711901835						195	13	2	NaN	NaN	NaN	0.00040703	1	19744	66.664	57.687	1	55801			12571	1856	10579	10847	12571	12571		
LLVVDPETDEQLQK	14	Unmodified	_LLVVDPETDEQLQK_			0	0	0	O14745	O14745	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.932885	1625.85122	2.6195	0.0021321	0.28434	0.00023144	2.9038	0.0023635	813.93323595037	10.764	0.22166	10.764	10.684	10.906	0	372	49	1.07593298845566	0.0320986976167694	1.07593298845566	434.60090101573	0	12.9656057164887						707	26	4	NaN	NaN	NaN	7.7824E-05	1	22363	112.93	76.685	1	320120			12572	116	10580	10848	12572	12572		
LLVVDRETDEFFK	13	Unmodified	_LLVVDRETDEFFK_			0	0	1	O14745	O14745	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.619001	1609.83517	0.08179	4.3972E-05	0.057977	3.117E-05	0.13977	7.5141E-05	537.618881526168	12.618	0.14187	12.618	12.573	12.715	0	663	49	0.880024865079826	0.0325412920913477	0.880024865079826	533.243763539407	0	19.7181258777857						432	17	4	NaN	NaN	NaN	0.044531	1	21892	51.531	33.8	1	178310			12573	116	10581	10849	12573	12573		
LLVVSESSAAQEQDK	15	Unmodified	_LLVVSESSAAQEQDK_			0	0	0	Q12802	Q12802	Q12802	AKAP13	A-kinase anchor protein 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.412317	1602.81008	1.769	0.0014195	-0.14068	-0.00011289	1.6283	0.0013066	802.411842697969	7.0303	0.088753	7.0303	6.9949	7.0836	0	369	25	1.07793901817685	0.0160493451484018	1.07793901817685	435.464072620283	0	6.48358866629775						143	11	3	NaN	NaN	NaN	0.0049744	1	21679	52.863	42.613	1	26181			12574	1598	10582	10850	12574	12574		
LLVVYPWTQR	10	Unmodified	_LLVVYPWTQR_			0	0	0	CON__Q3SX09;CON__P02070;P68871;P02042;P69892;P69891;P02100	CON__Q3SX09	CON__Q3SX09	HBB;HBD;HBG2;HBG1;HBE1	Hemoglobin subunit beta;LVV-hemorphin-7;Spinorphin;Hemoglobin subunit delta;Hemoglobin subunit gamma-2;Hemoglobin subunit gamma-1;Hemoglobin subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.866423	1273.71829	1.3604	0.00086775	-0.12805	-8.1679E-05	1.2323	0.00078607	637.866403704665	14.56	0.26601	14.56	14.462	14.728	0	513	61	0.981336640919867	0.0404013742155731	0.981336640919867	397.31508672455	0	16.3573587603993						960	31	4	NaN	NaN	NaN	0.0007863	1	11607	74.486	69.579	1	526080		+	12575	40	10583	10851	12575	12575		
LLYDIVFK	8	Unmodified	_LLYDIVFK_			0	0	0	P23497	P23497	P23497	SP100	Nuclear autoantigen Sp-100	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.799686	1009.58482	-0.8131	-0.00041127	-2.4708	-0.0012497	-3.2839	-0.001661	505.798348350936	15.251	0.13298	15.251	15.189	15.322	1.7764E-15	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	350.687130391981	0	6.6114751928298						163	16	3	NaN	NaN	NaN	0.018291	1	4505	44.767	25.28	1	42021			12576	821	10584	10852	12576	12576		
LLYDLADQLHAAVGASR	17	Unmodified	_LLYDLADQLHAAVGASR_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.991609	1811.953	-0.78754	-0.00047645	-0.2831	-0.00017128	-1.0706	-0.00064773	605.325624334007	14.843	0.19509	14.843	14.755	14.95	0	618	133	0.910492137470517	0.0894514823408173	0.910492137470517	551.180458150252	0	54.1508344660774						1462	23	5	NaN	NaN	NaN	6.5699E-07	1	27532	102.03	90.01	1	497760			12577	685	10585	10853	12577	12577		
LLYDLADQLHAAVGASR	17	Unmodified	_LLYDLADQLHAAVGASR_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.983775	1811.953	0.77817	0.00070579	2.7663	0.002509	3.5445	0.0032148	907.487830554563	14.843	0.26603	14.843	14.719	14.985	0	228	58	1.17191150690002	0.0378636312873253	1.17191150690002	472.958455241562	0	15.2809529201228						759	31	5	NaN	NaN	NaN	1.0788E-05	1	27533	66.66	63.575	1	251460			12578	685	10585	10853	12578	12578		
LLYDTFSAFGVILQTPK	17	Unmodified	_LLYDTFSAFGVILQTPK_			0	0	0	Q15427	Q15427	Q15427	SF3B4	Splicing factor 3B subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.024577	1912.0346	0.69001	0.00066036	0.74421	0.00071222	1.4342	0.0013726	957.026312977545	19.933	0.026601	19.933	19.933	19.96	0	165	25	1.21370334790578	0.0158999483075482	1.21370334790578	489.629961863916	0	6.41432776542638						63	4	4	NaN	NaN	NaN	0.0026014	1	29882	53.051	50.336	1	14138			12579	1847	10586	10854	12579	12579		
LLYEALVDCK	10	Unmodified	_LLYEALVDCK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.320657	1222.62676	0.74685	0.00045731	0.69212	0.0004238	1.439	0.00088111	612.321103961799	12.112	0.20397	12.112	12.032	12.236	0	537	37	0.965173861991602	0.0242609491796308	0.965173861991602	390.946345944038	0	9.82696465830446						547	24	4	NaN	NaN	NaN	4.3419E-05	1	10090	93.467	69.892	1	186660			12580	2115	10587	10855	12580	12580		
LLYGFLIK	8	Unmodified	_LLYGFLIK_			0	0	0	Q92542	Q92542	Q92542	NCSTN	Nicastrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.804771	965.59499	-0.77531	-0.0003751	-1.534	-0.00074217	-2.3093	-0.0011173	483.804003308033	15.367	0.15085	15.367	15.331	15.482	0	717	46	0.84338031290707	0.030564706108142	0.84338031290707	342.626712340602	0	12.4170372573581						359	18	3	NaN	NaN	NaN	0.020376	1	3560	61.494	47.847	1	88524			12581	2410	10588	10856	12581	12581		
LLYPPETGLFLVR	13	Unmodified	_LLYPPETGLFLVR_			0	0	0	P41240	P41240	P41240	CSK	Tyrosine-protein kinase CSK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.439952	1516.86535	1.0968	0.00083295	-0.32936	-0.00025013	0.76743	0.00058281	759.439791240005	17.53	0.19509	17.53	17.459	17.654	0	384	58	1.06790610341098	0.0381566484153506	1.06790610341098	431.620343279763	0	15.4219417183167						638	23	3	NaN	NaN	NaN	0.015278	1	19049	59.645	50.131	1	146790			12582	1034	10589	10857	12582	12582		
LLYTFPGWK	9	Unmodified	_LLYTFPGWK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.810585	1123.60662	-0.081701	-4.5982E-05	-3.812	-0.0021454	-3.8937	-0.0021914	562.808410330478	14.923	0.15959	14.923	14.852	15.012	0	651	64	0.888155670855968	0.0426482764776017	0.888155670855968	360.103623954278	0	17.2917872608832						499	19	4	NaN	NaN	NaN	0.010947	1	7366	60.589	48.94	1	187470			12583	2329	10590	10858	12583	12583		
LMADELER	8	Unmodified	_LMADELER_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.742042	975.469531	0.17642	8.6226E-05	1.3938	0.00068121	1.5702	0.00076744	488.742939163107	6.5427	0.133	6.5427	6.4806	6.6136	-8.8818E-16	702	25	0.853568545818287	0.0162977768340994	0.853568545818287	346.716424496639	0	6.6200974003159						210	16	3	NaN	NaN	NaN	0.050075	1	3740	34.931	19.433	1	53028			12584	270	10591	10859	12584	12584		
LMAFQPAPK	9	Unmodified	_LMAFQPAPK_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.775688	1001.53682	-0.076594	-3.8433E-05	2.2619	0.001135	2.1854	0.0010966	501.775183889578	7.527	0.21279	7.527	7.4294	7.6422	0	678	67	0.869855008346864	0.0448002364855021	0.869855008346864	353.204050914758	0	18.1911063990892						587	25	3	NaN	NaN	NaN	0.010691	1	4333	53.679	40.032	1	153650			12585	2490	10592	10860	12585	12585		
LMAHLFGDELEIR	13	Unmodified	_LMAHLFGDELEIR_			0	0	0	O95363	O95363	O95363	FARS2	Phenylalanine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.269426	1542.78645	-1.6407	-0.00084542	-0.213	-0.00010975	-1.8537	-0.00095517	515.269409521882	14.045	0.044331	14.045	14.019	14.063	0	756	16	0.816857749704129	0.0102094981511169	0.816857749704129	495.151404024516	0	6.18865077272301						60	6	3	NaN	NaN	NaN	0.070124	1	19822	13.175	12.724	1	9447.6			12586	426	10593	10861	12586	12586		
LMALLGQALK	10	Unmodified	_LMALLGQALK_			0	0	0	Q2TAY7	Q2TAY7	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.325545	1056.63654	0.58399	0.00030912	-0.88901	-0.00047057	-0.30501	-0.00016145	529.325048910519	13.85	0.1596	13.85	13.806	13.966	0	660	64	0.882057989648486	0.0426778685344582	0.882057989648486	357.905877561802	0	17.3170700447707						515	19	3	NaN	NaN	NaN	0.00047468	1	5643	93.561	71.633	1	166070			12587	1926	10594	10862	12587	12587		
LMAPYTPFLTELMYQNLK	18	Unmodified	_LMAPYTPFLTELMYQNLK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.040583	2172.09992	-0.47599	-0.00034511	-0.95572	-0.00069294	-1.4317	-0.001038	725.374189534533	20.04	0.017739	20.04	20.031	20.049	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	552.939620100604	0	8.58556113124246						68	3	5	NaN	NaN	NaN	0.06022	1	34341	18.098	15.857	1	14077			12588	1036	10595	10863	12588	12588		
LMATMFQNLFPSINVHK	17	Unmodified	_LMATMFQNLFPSINVHK_			0	0	0	Q9NQ55	Q9NQ55	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.34623	1990.01686	-0.56405	-0.00037472	-0.11785	-7.8293E-05	-0.6819	-0.00045302	664.680790072762	18.204	0.13298	18.204	18.107	18.24	0	612	19	0.914549654013882	0.0121708628142703	0.914549654013882	553.260687497516	0	7.36281501885401						271	16	4	NaN	NaN	NaN	0.0003877	1	31460	81.48	64.066	1	61718			12589	2997	10596	10864	12589	12589		
LMCPQEIVDYIADK	14	Unmodified	_LMCPQEIVDYIADK_			0	0	0	O14561	O14561	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.910041	1693.80553	2.0397	0.0017295	0.29998	0.00025436	2.3397	0.0019839	847.910474698334	17.876	0.46105	17.876	17.592	18.053	0	348	73	1.09197348738011	0.0480883834850949	1.09197348738011	440.930596648598	0	19.4177238431143						1347	53	3	NaN	NaN	NaN	0.0041467	1	24307	66.953	53.779	1	966320			12590	104	10597	10865	12590	12590		
LMCPQEIVDYIADK	14	Oxidation (M)	_LM(Oxidation (M))CPQEIVDYIADK_	LM(1)CPQEIVDYIADK	LM(45)CPQEIVDYIADK	0	1	0	O14561	O14561	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.907498	1709.80044	1.9181	0.0016417	-1.5934	-0.0013638	0.32471	0.00027792	856.407121391952	14.985	0.34583	14.985	14.764	15.109	0	360	43	1.08395544855938	0.0280708775163501	1.08395544855938	437.65974854775	0	11.3339466226664						831	40	3	NaN	NaN	NaN	0.0052296	1	24739	45.183	38.807	1	278070			12591	104	10597	10866	12591	12591	33	
LMDEAVLALR	10	Oxidation (M)	_LM(Oxidation (M))DEAVLALR_	LM(1)DEAVLALR	LM(48)DEAVLALR	0	1	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.812999	1145.61144	0.73982	0.00042452	-0.9853	-0.00056538	-0.24548	-0.00014086	573.812150569145	10.418	0.11526	10.418	10.356	10.472	0	615	25	0.912521036363781	0.016227817631378	0.912521036363781	369.896431103758	0	6.57805309384275						148	14	2	NaN	NaN	NaN	0.031278	1	7948	48.157	33.395	1	39193			12592	2420	10598	10867	12592	12592	599	
LMDEVAGIVAAR	12	Unmodified	_LMDEVAGIVAAR_			0	0	0	O00154	O00154	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.837005	1243.65946	1.1466	0.00071417	-0.11274	-7.0217E-05	1.0339	0.00064395	622.837055503701	12.316	0.088671	12.316	12.281	12.369	0	471	70	1.00957851518677	0.0463941766038743	1.00957851518677	408.855364855546	0	18.7885416708183						340	11	3	NaN	NaN	NaN	0.0015243	1	10742	85.716	75.014	1	90435			12593	53	10599	10868	12593	12593		
LMDGEEPLPMLPSYK	15	Unmodified	_LMDGEEPLPMLPSYK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.420242	1718.82593	2.2707	0.0019537	0.35482	0.00030529	2.6255	0.002259	860.421286309696	14.914	0.266	14.914	14.843	15.109	0	330	70	1.10399226369747	0.0460307788165002	1.10399226369747	445.731019361817	0	18.5846827360734						1023	31	4	NaN	NaN	NaN	4.8955E-06	1	25023	91.245	85.857	1	216580			12594	652	10600	10869	12594	12594		
LMDHVGTEPSIK	12	Unmodified	_LMDHVGTEPSIK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.895589	1325.66494	-1.3866	-0.00061412	0.1885	8.3486E-05	-1.1981	-0.00053064	442.895894230533	5.9751	0.15969	5.9751	5.8953	6.055	0	804	28	0.78414869089473	0.018420624064141	0.78414869089473	476.015055067065	0	11.1821832773282						277	19	3	NaN	NaN	NaN	0.028309	1	13154	18.507	14.305	1	69757			12595	519	10601	10870	12595	12595		
LMDLDVEQLGIPEQEYSCVVK	21	Unmodified	_LMDLDVEQLGIPEQEYSCVVK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.402797	2464.18656	1.3813	0.001136	0.35904	0.00029528	1.7403	0.0014313	822.736920511008	17.521	0.23052	17.521	17.433	17.663	0	366	109	1.07994477139643	0.0722619999142002	1.07994477139643	652.446399758269	0	43.6569377732054						982	27	5	NaN	NaN	NaN	0.00049093	1	36641	51.07	47.995	1	264520			12596	662	10602	10871	12596	12596		
LMDLDVEQLGIPEQEYSCVVK	21	Oxidation (M)	_LM(Oxidation (M))DLDVEQLGIPEQEYSCVVK_	LM(1)DLDVEQLGIPEQEYSCVVK	LM(48)DLDVEQLGIPEQEYSCVVK	0	1	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1241.09802	2480.18148	0.091953	0.00011412	0.13282	0.00016485	0.22478	0.00027897	1241.59995256877	15.881	0.07093	15.881	15.845	15.916	0	63	40	1.28111162701928	0.0257225849725	1.28111162701928	515.969804426333	0	10.3598131947958						209	9	4	NaN	NaN	NaN	5.4715E-05	1	36730	47.844	47.511	1	36430			12597	662	10602	10872	12597	12597	199	
LMDLLADSR	9	Unmodified	_LMDLLADSR_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.270967	1032.52738	0.32205	0.00016659	0.71063	0.00036759	1.0327	0.00053417	517.270790281255	11.465	0.20409	11.465	11.412	11.616	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	359.663445132787	0	9.90049724151692						347	24	3	NaN	NaN	NaN	0.0052236	1	5062	65.404	40.15	1	85300			12598	280	10603	10873	12598	12598		
LMDLLGEGLK	10	Unmodified	_LMDLLGEGLK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.804642	1087.59473	0.58137	0.00031673	-0.56995	-0.00031051	0.011421	6.2223E-06	544.804954398838	14.196	0.29258	14.196	14.143	14.435	0	636	79	0.898312834727904	0.0528209570773358	0.898312834727904	364.367966149933	0	21.4249022793839						1014	34	5	NaN	NaN	NaN	3.2865E-05	1	6416	100.84	56.069	1	645530			12599	1250	10604	10874	12599	12599		
LMDLLGEGLK	10	Oxidation (M)	_LM(Oxidation (M))DLLGEGLK_	LM(1)DLLGEGLK	LM(57)DLLGEGLK	0	1	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.8021	1103.58965	0.55752	0.0003082	-4.5724	-0.0025276	-4.0148	-0.0022194	552.799092193233	11.305	0.204	11.305	11.19	11.394	0	621	67	0.908462957275599	0.0446760507489944	0.908462957275599	368.418196552281	0	18.1179319577137						363	24	3	NaN	NaN	NaN	0.032105	1	6820	57.032	22.101	1	100780			12600	1250	10604	10875	12600	12600	442	
LMDLQLSDSNFR	12	Unmodified	_LMDLQLSDSNFR_			0	0	0	Q96FV9	Q96FV9	Q96FV9	THOC1	THO complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.853383	1437.69221	1.1595	0.00083467	2.2703	0.0016343	3.4298	0.002469	719.856151077579	13.176	0.23057	13.176	13.052	13.283	0	462	37	1.01562323939346	0.0241772305983219	1.01562323939346	410.693285329367	0	9.77668280859785						373	27	4	NaN	NaN	NaN	0.00012346	1	16605	116.13	90.275	1	74813			12601	2528	10605	10876	12601	12601		
LMDQLEALK	9	Unmodified	_LMDQLEALK_			0	0	0	Q9NP79	Q9NP79	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.788992	1059.56343	0.8046	0.00042707	-0.85754	-0.00045517	-0.052936	-2.8098E-05	530.78904650401	10.782	0.16846	10.782	10.72	10.888	0	639	43	0.896281965493857	0.0284420373903148	0.896281965493857	363.664505866512	0	11.5402963259295						321	20	4	NaN	NaN	NaN	0.005248	1	5719	67.507	38.406	1	107350			12602	2979	10606	10877	12602	12602		
LMDVGLIAIR	10	Unmodified	_LMDVGLIAIR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.828452	1099.64235	0.67998	0.00037455	-0.55636	-0.00030646	0.12362	6.8093E-05	550.828454719243	14.994	0.33693	14.994	14.932	15.269	0	609	79	0.916577990479294	0.0527039109891232	0.916577990479294	371.725605526625	0	21.3744966926475						1351	39	5	NaN	NaN	NaN	4.581E-11	1	6718	182.09	139.25	1	1722900			12603	934	10607	10878	12603	12603		
LMDVGLIAIR	10	Oxidation (M)	_LM(Oxidation (M))DVGLIAIR_	LM(1)DVGLIAIR	LM(63)DVGLIAIR	0	1	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.825909	1115.63727	0.63881	0.00035699	-0.87468	-0.00048879	-0.23586	-0.00013181	558.825754490191	12.423	0.23939	12.423	12.361	12.6	0	609	49	0.916577990479294	0.0324511442563469	0.916577990479294	371.659640880199	0	13.1584881436642						616	28	4	NaN	NaN	NaN	0.0081255	1	7157	62.969	48.434	1	268200			12604	934	10607	10879	12604	12604	334	
LMEDLDR	7	Unmodified	_LMEDLDR_			0	0	0	P06703	P06703	P06703	S100A6	Protein S100-A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.21566	890.416767	-0.82565	-0.00036842	0.90427	0.0004035	0.078618	3.508E-05	446.216291922823	5.8864	0.35475	5.8864	5.8066	6.1614	0	780	79	0.800512323802183	0.0531300647129144	0.800512323802183	325.596587146564	0	21.6098706179017						1085	41	6	NaN	NaN	NaN	0.011873	1	2164	81.32	55.097	1	1297900			12605	542	10608	10880	12605	12605		
LMEDLDRNK	9	Unmodified	_LMEDLDRNK_			0	0	1	P06703	P06703	P06703	S100A6	Protein S100-A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.525496	1132.55466	0.038384	1.4529E-05	-0.28605	-0.00010828	-0.24767	-9.3748E-05	378.525470040605	4.2017	0.25716	4.2017	4.1662	4.4233	0	900	34	0.718511479433384	0.0226115942129311	0.718511479433384	436.935286198911	0	13.7503765376608						444	30	4	NaN	NaN	NaN	0.0095292	1	7601	62.88	49.232	1	190020			12606	542	10609	10881	12606	12606		
LMEEDELPSWIIK	13	Unmodified	_LMEEDELPSWIIK_			0	0	0	P51531;P51532	P51531;P51532	P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.907824	1601.8011	0.7311	0.00058628	0.51823	0.00041557	1.2493	0.0010018	801.908311174355	16.688	0.13304	16.688	16.635	16.768	0	381	76	1.06991323971056	0.050213057525148	1.06991323971056	432.224161622739	0	20.2850996564849						539	16	3	NaN	NaN	NaN	1.8325E-06	1	21641	103.69	93.436	1	132470			12607	1187;1186	10610	10882	12607	12607		
LMEIYQEK	8	Unmodified	_LMEIYQEK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.267893	1052.52123	0.61891	0.00032633	-0.42114	-0.00022205	0.19778	0.00010428	527.267695425538	7.2166	0.37232	7.2166	7.066	7.4383	0	669	40	0.875957769340875	0.0264416320907981	0.875957769340875	355.448514257845	0	10.7295570291007						470	43	3	NaN	NaN	NaN	0.0029694	1	5530	93.561	67.338	1	136160			12608	2420	10611	10883	12608	12608		
LMELFPANK	9	Unmodified	_LMELFPANK_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.786253	1061.55795	-0.24309	-0.00012927	-4.7849	-0.0025445	-5.028	-0.0026738	531.783680147758	11.669	0.24834	11.669	11.5	11.749	0	669	67	0.875957769340875	0.0447442889096176	0.875957769340875	355.409456128536	0	18.1544635401673						580	29	4	NaN	NaN	NaN	0.0013983	1	5769	56.014	31.163	1	267050			12609	2112	10612	10884	12609	12609		
LMELHFK	7	Unmodified	_LMELHFK_			0	0	0	Q8WYA6	Q8WYA6	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.249306	916.484059	-0.68514	-0.00031465	0.5519	0.00025346	-0.13324	-6.1191E-05	459.249459467662	8.1213	0.11521	8.1213	8.077	8.1922	0	723	25	0.839303037468863	0.0163113695706084	0.839303037468863	341.226678072675	0	6.63154332215896						161	14	3	NaN	NaN	NaN	0.047488	1	2640	42.229	28.581	1	37791			12610	2400	10613	10885	12610	12610		
LMELHGEGSSSGK	13	Unmodified	_LMELHGEGSSSGK_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.316634	1330.61871	2.7146	0.0018088	-1.6064	-0.0010704	1.1081	0.00073838	666.316236060268	3.5544	0.46994	3.5544	3.5012	3.9711	4.4409E-16	522	106	0.975277694896658	0.0707856810470242	0.975277694896658	394.680826454649	0	28.645944886246						1767	54	5	NaN	NaN	NaN	5.5731E-17	1	13303	177.47	144.04	1	670940			12611	1338	10614	10886	12611	12611		
LMELHGEGSSSGK	13	Unmodified	_LMELHGEGSSSGK_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.546848	1330.61871	-0.051967	-2.3102E-05	1.8258	0.00081167	1.7739	0.00078856	444.54787263969	3.5544	0.36353	3.5544	3.5012	3.8647	0	810	82	0.78005493425781	0.055300409364259	0.78005493425781	473.511785131844	0	33.5686557530801						1172	42	5	NaN	NaN	NaN	0.00053672	1	13304	72.922	60.095	1	1017600			12612	1338	10614	10886	12612	12612		
LMELYER	7	Unmodified	_LMELYER_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.241678	952.468803	0.016431	7.8414E-06	0.22505	0.0001074	0.24148	0.00011525	477.241716536619	7.8463	0.17725	7.8463	7.802	7.9793	8.8818E-16	726	34	0.837263974740672	0.022429693259391	0.837263974740672	340.207716950612	0	9.11391743332018						252	21	2	NaN	NaN	NaN	0.0037656	1	3287	63.301	9.6222	1	145930			12613	3202	10615	10887	12613	12613		
LMEPIYLVEIQCPEQVVGGIYGVLNR	26	Unmodified	_LMEPIYLVEIQCPEQVVGGIYGVLNR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	997.189038	2988.54529	1.4826	0.0014784	-1.9641	-0.0019586	-0.4815	-0.00048014	997.521271618452	20.111	0.035461	20.111	20.102	20.137	0	324	28	1.1079963157843	0.01801947676188	1.1079963157843	668.73474066097	0	10.875713165772						112	5	6	NaN	NaN	NaN	0.044659	1	38205	16.265	16.129	1	39742			12614	679	10616	10888	12614	12614		
LMEPIYLVEIQCPEQVVGGIYGVLNR	26	Unmodified	_LMEPIYLVEIQCPEQVVGGIYGVLNR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	997.189038	2988.54529	1.1491	0.0011459	0.044874	4.4748E-05	1.194	0.0011906	997.523052605527	20.111	0.044318	20.111	20.084	20.128	0	186	67	1.1997861197946	0.0437849366905276	1.1997861197946	724.134765398242	0	26.4265391433267						208	6	6	NaN	NaN	NaN	0.042419	1	38206	14.191	14.067	1	59970			12615	679	10616	10888	12615	12615		
LMFEELR	7	Unmodified	_LMFEELR_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.244221	936.473888	0.11558	5.4234E-05	-0.4589	-0.00021534	-0.34332	-0.0001611	469.24404146307	11.092	0.15073	11.092	11.03	11.181	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	347.744879652868	0	8.27761076609141						338	18	4	NaN	NaN	NaN	0.0054947	1	3002	80.294	62.599	1	135830			12616	3395	10617	10889	12616	12616		
LMFNSPGFVEYVVDR	15	Unmodified	_LMFNSPGFVEYVVDR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.937447	1771.86034	1.8933	0.0016792	1.3843	0.0012278	3.2776	0.002907	886.938895744828	17.619	0.23939	17.619	17.557	17.796	0	294	46	1.12800004657306	0.0299828961966486	1.12800004657306	455.314965817773	0	12.1025361642223						710	28	5	NaN	NaN	NaN	2.2558E-06	1	26464	126.32	110.03	1	213690			12617	1881	10618	10890	12617	12617		
LMFNSPGFVEYVVDR	15	Oxidation (M)	_LM(Oxidation (M))FNSPGFVEYVVDR_	LM(1)FNSPGFVEYVVDR	LM(61)FNSPGFVEYVVDR	0	1	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.934905	1787.85526	1.3635	0.0012203	0.06518	5.8332E-05	1.4287	0.0012786	895.436117398509	16.44	0.21281	16.44	16.351	16.564	0	291	40	1.12999890578964	0.0259851749816993	1.12999890578964	456.090120249916	0	10.4881354498626						520	25	4	NaN	NaN	NaN	6.2509E-06	1	26919	61.042	54.52	1	134400			12618	1881	10618	10891	12618	12618	578	
LMGCQDILENVPGR	14	Unmodified	_LMGCQDILENVPGR_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.39235	1600.77015	1.5025	0.0012041	-0.11276	-9.0362E-05	1.3897	0.0011137	801.392379600907	12.281	0.29265	12.281	12.121	12.414	0	387	37	1.06589869032374	0.0240906221251305	1.06589869032374	430.604741379803	0	9.73219706904763						495	34	4	NaN	NaN	NaN	1.339E-05	1	21603	117.21	110.83	1	122630			12619	1883	10619	10892	12619	12619		
LMGDYLLR	8	Unmodified	_LMGDYLLR_			0	0	0	O60232	O60232	O60232	SSSCA1	Sjoegren syndrome/scleroderma autoantigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.76532	979.516088	-0.82888	-0.00040678	-1.0671	-0.00052371	-1.896	-0.00093049	490.764916304877	11.687	0.15953	11.687	11.616	11.775	0	714	31	0.845418525735192	0.0203778832072955	0.845418525735192	343.386205603413	0	8.27694660073553						331	19	4	NaN	NaN	NaN	0.044722	1	3837	46.835	24.908	1	124990			12620	249	10620	10893	12620	12620		
LMGFASFDSTK	11	Unmodified	_LMGFASFDSTK_			0	0	0	Q8WVK2	Q8WVK2	Q8WVK2	SNRNP27	U4/U6.U5 small nuclear ribonucleoprotein 27 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.289356	1202.56416	0.20889	0.00012581	4.4231	0.002664	4.632	0.0027898	602.291980674855	12.352	0.1596	12.352	12.263	12.423	0	600	55	0.922661313351899	0.0365024805192742	0.922661313351899	373.796098186682	0	14.7881834805358						499	19	3	NaN	NaN	NaN	0.00088533	1	9531	53.517	47.286	1	118320			12621	2380	10621	10894	12621	12621		
LMGLEALK	8	Unmodified	_LMGLEALK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.756964	873.499375	-2.4591	-0.0010765	-1.1752	-0.00051447	-3.6344	-0.001591	437.756935063022	11.358	0.16854	11.358	11.323	11.491	0	768	25	0.808687310729125	0.0163454259019459	0.808687310729125	329.018355456933	0	6.65021582279132						224	20	3	NaN	NaN	NaN	0.055878	1	1918	38.322	24.77	1	49924			12622	1113	10622	10895	12622	12622		
LMGLEALK	8	Oxidation (M)	_LM(Oxidation (M))GLEALK_	LM(1)GLEALK	LM(65)GLEALK	0	1	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.754421	889.494289	-0.41169	-0.00018351	-1.4046	-0.00062613	-1.8163	-0.00080964	445.753612519091	8.1567	0.2041	8.1567	8.068	8.2721	0	741	67	0.827064408645228	0.0448625236178622	0.827064408645228	336.401564904116	0	18.2474581094813						355	24	4	NaN	NaN	NaN	0.051205	1	2152	65.313	34.751	1	86145			12623	1113	10622	10896	12623	12623	396	
LMHLTSEELNPNPDK	15	Unmodified	_LMHLTSEELNPNPDK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.954055	1736.84033	-0.21627	-0.00012543	-0.092432	-5.3606E-05	-0.3087	-0.00017903	579.954085273642	8.3253	0.14184	8.3253	8.2544	8.3963	0	717	43	0.84338031290707	0.0285330039304067	0.84338031290707	510.720766465551	0	17.2785603527687						452	17	3	NaN	NaN	NaN	0.00033654	1	25515	90.306	84.279	1	127510			12624	2614	10623	10897	12624	12624		
LMHLTSEELNPNPDK	15	Unmodified	_LMHLTSEELNPNPDK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.427444	1736.84033	2.7046	0.0023515	-1.0003	-0.00086973	1.7043	0.0014817	869.427043734578	8.3253	0.16857	8.3253	8.21	8.3785	0	300	58	1.12400150285141	0.0380097163166782	1.12400150285141	453.771992711442	0	15.3449480909597						450	20	3	NaN	NaN	NaN	2.3646E-07	1	25516	78.157	75.263	1	94563			12625	2614	10623	10897	12625	12625		
LMHQAALLGQALQDSR	16	Unmodified	_LMHQAALLGQALQDSR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.645556	1750.91484	-0.19281	-0.00011272	-1.1556	-0.00067559	-1.3484	-0.00078832	584.64485873433	10.782	0.14189	10.782	10.729	10.871	0	732	37	0.833184998970724	0.0244738587568686	0.833184998970724	504.514776626712	0	14.8195459581829						441	17	5	NaN	NaN	NaN	1.3295E-06	1	25926	148.76	130.66	1	169500			12626	1914	10624	10898	12626	12626		
LMHQAALLGQALQDSR	16	Unmodified	_LMHQAALLGQALQDSR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.645556	1750.91484	1.0617	0.00062072	-0.44331	-0.00025918	0.61839	0.00036154	584.645612951096	10.773	0.12413	10.773	10.729	10.853	0	609	94	0.916577990479294	0.0629482876634733	0.916577990479294	555.011357753654	0	38.1167941705678						789	15	4	NaN	NaN	NaN	8.4011E-07	1	25928	108.24	90.146	1	271280			12627	1914	10624	10898	12627	12627		
LMHQAALLGQALQDSR	16	Unmodified	_LMHQAALLGQALQDSR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.464695	1750.91484	2.7916	0.0024467	-0.74652	-0.00065429	2.0451	0.0017924	876.464210960749	10.773	0.1064	10.773	10.738	10.844	0	294	52	1.12800004657306	0.0339806182631683	1.12800004657306	455.357262266008	0	13.7174828577637						352	13	3	NaN	NaN	NaN	0.00024125	1	25929	72.031	68.946	1	115740			12628	1914	10624	10898	12628	12628		
LMHVAYEEFEK	11	Unmodified	_LMHVAYEEFEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	465.891956	1394.65404	-1.7672	-0.00082334	0.33811	0.00015752	-1.4291	-0.00066582	465.892280783121	8.5914	0.19519	8.5914	8.5559	8.7511	0	789	31	0.794378096728713	0.0204516951022167	0.794378096728713	481.978981362946	0	12.4088103802266						299	23	4	NaN	NaN	NaN	0.00018959	1	15278	67.881	62.385	1	94796			12629	1737	10625	10899	12629	12629		
LMIEMDGTENK	11	Unmodified	_LMIEMDGTENK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.796688	1279.57882	2.0151	0.0012913	1.0757	0.00068929	3.0908	0.0019806	640.798080785811	8.6446	0.46145	8.6446	8.5736	9.0351	0	546	79	0.959108205975751	0.0526018145053345	0.959108205975751	388.296347701326	0	21.295920864429						2783	53	6	NaN	NaN	NaN	1.2569E-11	1	11735	162.49	124.9	1	4160500			12630	544	10626	10900	12630	12630		
LMIEMDGTENK	11	Oxidation (M)	_LMIEM(Oxidation (M))DGTENK_	LMIEM(1)DGTENK	LM(-88)IEM(88)DGTENK	0	1	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.794146	1295.57374	1.9063	0.0012368	0.50947	0.00033054	2.4158	0.0015674	648.794896230203	5.381	0.41679	5.381	5.2657	5.6825	0	558	61	0.951016745717027	0.0404741262657745	0.951016745717027	384.969747040925	0	16.3838483606196						1281	48	6	NaN	NaN	NaN	3.8149E-07	1	12222	127.94	101	2	921280			12631	544	10626	10901	12631	12631	116;117	
LMIEMDGTENK	11	2 Oxidation (M)	_LM(Oxidation (M))IEM(Oxidation (M))DGTENK_	LM(1)IEM(1)DGTENK	LM(64)IEM(64)DGTENK	0	2	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.791603	1311.56865	2.4567	0.0016136	-1.5801	-0.0010378	0.87666	0.00057578	656.791170383719	4.3613	0.45222	4.3613	4.2283	4.6805	0	564	49	0.946969335010767	0.0323792954262402	0.946969335010767	383.28204837664	0	13.1053902350709						726	52	3	NaN	NaN	NaN	0.012516	1	12697	64.064	51.237	1	369500			12632	544	10626	10902	12632	12632	116;117	
LMIETDAPWCGVK	13	Unmodified	_LMIETDAPWCGVK_			0	0	0	Q6P1N9	Q6P1N9	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.367812	1518.72107	1.6992	0.001292	0.019096	1.452E-05	1.7183	0.0013066	760.368288441028	13.451	0.17738	13.451	13.38	13.558	0	420	49	1.04379886199097	0.0321696140017538	1.04379886199097	421.872149865486	0	13.0019917758639						633	21	5	NaN	NaN	NaN	3.633E-05	1	19085	90.142	85.615	1	163170			12633	2061	10627	10903	12633	12633		
LMITHIVNQNFK	12	Unmodified	_LMITHIVNQNFK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.602628	1456.78605	-0.47919	-0.00023317	-0.50275	-0.00024464	-0.98194	-0.00047781	486.602594957394	10.374	0.079789	10.374	10.347	10.427	0	738	34	0.829104889055312	0.0224421675628655	0.829104889055312	502.838639344094	0	13.6108098627924						158	10	3	NaN	NaN	NaN	0.033828	1	17161	25.857	23.873	1	44615			12634	3042	10628	10904	12634	12634		
LMLAQDEER	9	Unmodified	_LMLAQDEER_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.771331	1103.52811	1.8451	0.0010199	3.8126	0.0021075	5.6576	0.0031274	552.773512873263	5.6471	0.16852	5.6471	5.6026	5.7711	0	606	31	0.918606045818476	0.0202735302015807	0.918606045818476	372.531843733429	0	8.22173511633156						324	20	4	NaN	NaN	NaN	1.2352E-06	1	6807	117.39	89.651	1	142920			12635	209	10629	10905	12635	12635		
LMLDLNK	7	Unmodified	_LMLDLNK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.741314	845.468075	-1.8634	-0.00078962	-1.1143	-0.00047217	-2.9777	-0.0012618	423.740926212521	9.2213	0.10642	9.2213	9.1858	9.2923	0	816	25	0.775960037304758	0.0163795890035051	0.775960037304758	315.864941147239	0	6.66753140352262						91	13	2	NaN	NaN	NaN	0.04646	1	1502	40.203	18.275	1	17561			12636	1267	10630	10906	12636	12636		
LMLISMANDLK	11	Unmodified	_LMLISMANDLK_			0	0	0	Q9Y394	Q9Y394	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.838159	1247.66177	0.6381	0.00039871	-0.075697	-4.7299E-05	0.56241	0.00035141	624.839044013606	15.189	0.088694	15.189	15.154	15.242	0	519	43	0.97729762293174	0.028284867590345	0.97729762293174	395.768429012502	0	11.4542973894447						181	11	3	NaN	NaN	NaN	0.040686	1	10856	28.647	21.496	1	30346			12637	3373	10631	10907	12637	12637		
LMLLDATFR	9	Unmodified	_LMLLDATFR_			0	0	0	Q6PIU2	Q6PIU2	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.299527	1078.5845	0.0098364	5.3146E-06	-1.6418	-0.00088705	-1.6319	-0.00088174	540.298548189077	15.101	0.15066	15.101	15.021	15.171	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	359.461324069926	0	9.89493343164855						263	18	3	NaN	NaN	NaN	0.00081495	1	6182	79.809	49.248	1	77290			12638	2076	10632	10908	12638	12638		
LMMDPLSGQNR	11	Unmodified	_LMMDPLSGQNR_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.305015	1260.59548	1.7515	0.0011057	0.056194	3.5475E-05	1.8077	0.0011412	631.305814910867	10.099	0.24827	10.099	9.9839	10.232	0	573	46	0.940896116921038	0.0303703038284173	0.940896116921038	380.984410465297	0	12.2974386774863						897	29	5	NaN	NaN	NaN	0.058841	1	11223	29.755	24.848	1	450750			12639	196	10633	10909	12639	12639		
LMMDPLTGLNR	11	Unmodified	_LMMDPLTGLNR_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.825583	1259.63661	1.5346	0.00096806	-0.69396	-0.00043777	0.84063	0.00053029	630.825882627352	13.93	0.28375	13.93	13.824	14.107	0	558	73	0.951016745717027	0.0485958715123074	0.951016745717027	385.085599892083	0	19.6774351428336						1227	33	6	NaN	NaN	NaN	6.043E-08	1	11200	139.02	125.03	1	1067200			12640	263	10634	10910	12640	12640		
LMNDMTAVALNYGIYK	16	Unmodified	_LMNDMTAVALNYGIYK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.95224	1815.88993	2.1648	0.0019677	-1.9844	-0.0018038	0.18035	0.00016393	909.45299884313	15.517	0.18633	15.517	15.455	15.642	0	288	58	1.13199748998575	0.0379678915865906	1.13199748998575	456.842503554151	0	15.3227783635006						680	22	4	NaN	NaN	NaN	1.7874E-08	1	27630	142.51	134.95	1	226710			12641	2415	10635	10911	12641	12641		
LMNESLMLVTALNPHIGYDK	20	Unmodified	_LMNESLMLVTALNPHIGYDK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	753.721913	2258.14391	0.4823	0.00036352	0.85695	0.0006459	1.3393	0.0010094	754.056867952089	17.051	0.17732	17.051	16.989	17.167	0	408	55	1.0518390438467	0.0361858246299764	1.0518390438467	635.791342828145	0	21.8727705226632						435	21	2	NaN	NaN	NaN	2.8143E-06	1	35258	148.82	134.96	1	291400			12642	571	10636	10912	12642	12642		
LMNETTAVALAYGIYK	16	Unmodified	_LMNETTAVALAYGIYK_			0	0	0	O95757;P34932	O95757;P34932	P34932	HSPA4L;HSPA4	Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.642929	1756.90696	0.98928	0.00058036	-1.1948	-0.0007009	-0.20549	-0.00012055	586.642074542914	15.553	0.17734	15.553	15.508	15.686	1.7764E-15	585	31	0.932794566565362	0.0202622968311691	0.932794566565362	564.815795166181	0	12.2690093904915						231	21	4	NaN	NaN	NaN	0.010755	1	26070	52.837	50.701	1	87646			12643	955;450	10637	10913	12643	12643		
LMNETTAVALAYGIYK	16	Unmodified	_LMNETTAVALAYGIYK_			0	0	0	O95757;P34932	O95757;P34932	P34932	HSPA4L;HSPA4	Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.460755	1756.90696	1.9588	0.0017227	0.27215	0.00023935	2.2309	0.001962	879.46119628167	15.562	0.22167	15.562	15.508	15.73	0	117	85	1.24546401832526	0.0555507336132799	1.24546401832526	502.762289346565	0	22.4244246283798						1113	26	5	NaN	NaN	NaN	2.4594E-25	1	26072	176.97	164.39	1	445430			12644	955;450	10637	10913	12644	12644		
LMNETTAVALAYGIYK	16	Oxidation (M)	_LM(Oxidation (M))NETTAVALAYGIYK_	LM(1)NETTAVALAYGIYK	LM(98)NETTAVALAYGIYK	0	1	0	O95757;P34932	O95757;P34932	P34932	HSPA4L;HSPA4	Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.458213	1772.90187	2.6112	0.0023173	1.968	0.0017465	4.5792	0.0040638	888.464234043317	13.832	0.15072	13.832	13.762	13.912	0	279	40	1.13799159301878	0.0259673060205863	1.13799159301878	459.345936210633	0	10.4816033510867						369	18	4	NaN	NaN	NaN	1.1732E-05	1	26484	98.167	94.662	1	95100			12645	955;450	10637	10914	12645	12645	64	
LMPENPTYAETAVEVPNK	18	Unmodified	_LMPENPTYAETAVEVPNK_			0	0	0	O94822	O94822	O94822	LTN1	E3 ubiquitin-protein ligase listerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.99315	2001.97174	1.7442	0.0017477	0.24199	0.00024247	1.9862	0.0019901	1002.49480777739	10.72	0.062055	10.72	10.684	10.746	0	198	25	1.1918274123006	0.0159217872807365	1.1918274123006	480.649161639771	0	6.42105864432193						96	8	3	NaN	NaN	NaN	0.00033483	1	31670	61.23	56.675	1	14300			12646	388	10638	10915	12646	12646		
LMQGFNEDMAIEAQQK	16	Unmodified	_LMQGFNEDMAIEAQQK_			0	0	0	O14929	O14929	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.29045	1851.84952	0.47069	0.00029102	-1.3793	-0.0008528	-0.9086	-0.00056178	618.289028108925	11.27	0.097534	11.27	11.234	11.332	0	630	31	0.902373728295776	0.0203016545312636	0.902373728295776	546.17655372333	0	12.2879106062945						144	12	2	NaN	NaN	NaN	0.053431	1	28535	43.613	42.937	1	44140			12647	126	10639	10916	12647	12647		
LMQGFNEDMAIEAQQK	16	Unmodified	_LMQGFNEDMAIEAQQK_			0	0	0	O14929	O14929	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.932036	1851.84952	2.3148	0.0021456	-2.4668	-0.0022865	-0.15201	-0.0001409	926.928710677191	11.27	0.16852	11.27	11.225	11.394	0	270	67	1.14398322290989	0.0439477106737494	1.14398322290989	461.611654610477	0	17.7334553813206						624	20	4	NaN	NaN	NaN	1.908E-08	1	28536	81.908	77.353	1	118520			12648	126	10639	10916	12648	12648		
LMQITSLHSLNAFLLPIK	18	Unmodified	_LMQITSLHSLNAFLLPIK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.395578	2038.1649	-0.58116	-0.00039542	-0.090377	-6.1492E-05	-0.67154	-0.00045691	680.394951766584	18.665	0.053206	18.665	18.639	18.692	0	624	55	0.906433495720521	0.0365480561699901	0.906433495720521	548.261133473985	0	22.1062866681705						183	7	3	NaN	NaN	NaN	7.5945E-07	1	32318	70.806	70.287	1	37249			12649	1155	10640	10917	12649	12649		
LMQITSLHSLNAFLLPIK	18	Unmodified	_LMQITSLHSLNAFLLPIK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.395578	2038.1649	0.3526	0.00023991	-0.22532	-0.00015331	0.12728	8.6601E-05	680.729983005531	18.656	0.08867	18.656	18.621	18.71	0	525	49	0.973257487423603	0.0323434604594182	0.973257487423603	588.679981734544	0	19.5631145493518						324	11	4	NaN	NaN	NaN	0.0055402	1	32319	56.938	56.801	1	85376			12650	1155	10640	10917	12650	12650		
LMQLMESEQK	10	Unmodified	_LMQLMESEQK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.801774	1235.58899	1.5338	0.00094911	0.46616	0.00028846	2	0.0012376	618.802817923644	7.9438	0.22171	7.9438	7.8285	8.0502	0	564	37	0.946969335010767	0.0242911943445451	0.946969335010767	383.52762913919	0	9.8380632101638						378	26	4	NaN	NaN	NaN	0.0027807	1	10482	81.163	63.768	1	92325			12651	2167	10641	10918	12651	12651		
LMQLVDHR	8	Unmodified	_LMQLVDHR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.273844	1010.53313	0.20291	0.00010273	4.003	0.0020266	4.2059	0.0021294	506.274830052976	5.3987	0.15957	5.3987	5.3278	5.4873	0	693	43	0.85967808974117	0.028505272317873	0.85967808974117	349.029597495925	0	11.573150278396						430	19	4	NaN	NaN	NaN	0.0034028	1	4524	82.716	60.788	1	165090			12652	2435	10642	10919	12652	12652		
LMQVGEEFCGSK	12	Unmodified	_LMQVGEEFCGSK_			0	0	0	Q96JG6	Q96JG6	Q96JG6	CCDC132	Coiled-coil domain-containing protein 132	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.815412	1383.61627	1.1422	0.00079131	-0.21311	-0.00014764	0.92906	0.00064367	692.814626318771	8.6446	0.14197	8.6446	8.6002	8.7422	0	504	22	0.987393073566096	0.0141277691793039	0.987393073566096	399.426380629528	0	5.71505296191549						182	17	3	NaN	NaN	NaN	0.0036765	1	14930	47.334	30.682	1	39441			12653	2567	10643	10920	12653	12653		
LMSAISK	7	Unmodified	_LMSAISK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	375.214932	748.415311	-0.03435	-1.2889E-05	-1.3321	-0.00049982	-1.3664	-0.00051271	375.214336443075	4.0686	0.19511	4.0686	3.9977	4.1928	0	870	28	0.739054571787983	0.0184746054874579	0.739054571787983	301.463905026663	0	7.53588019975587						181	23	2	NaN	NaN	NaN	0.050781	1	606	38.322	16.394	1	36529			12654	1127	10644	10921	12654	12654		
LMSNLDSNR	9	Unmodified	_LMSNLDSNR_			0	0	0	P26447	P26447	P26447	S100A4	Protein S100-A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.255848	1048.49714	1.9701	0.0010348	0.34668	0.0001821	2.3168	0.0012169	525.256258976122	4.4322	0.31921	4.4322	4.3613	4.6805	0	657	52	0.884090832094921	0.0345487443998951	0.884090832094921	358.766547018466	0	14.0199776789939						757	37	4	NaN	NaN	NaN	8.3657E-05	1	5421	110.22	100.82	1	554340			12655	854	10645	10922	12655	12655		
LMSSGNEESLR	11	Unmodified	_LMSSGNEESLR_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.790252	1221.56595	1.4743	0.00090196	-1.2743	-0.00077962	0.19997	0.00012234	611.789060054475	4.6095	0.15074	4.6095	4.5829	4.7337	0	591	52	0.928742107665821	0.0344721745325131	0.928742107665821	376.193218045515	0	13.9631854347654						179	18	2	NaN	NaN	NaN	0.040001	1	10055	22.898	18.695	1	45949			12656	826	10646	10923	12656	12656		
LMSSNSTDLPLNIECFMNDK	20	Unmodified	_LMSSNSTDLPLNIECFMNDK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.02908	2328.0436	0.38501	0.00044855	-0.77593	-0.00090398	-0.39092	-0.00045543	1165.53048332857	18.169	0.19506	18.169	18.053	18.248	0	78	73	1.27121832677567	0.0475301589690296	1.27121832677567	512.171762576916	0	19.149822482873						963	23	6	NaN	NaN	NaN	0.00020787	1	35879	63.947	56.299	1	243430			12657	2415	10647	10924	12657	12657		
LMSSNSTDLPLNIECFMNDK	20	Oxidation (M)	_LM(Oxidation (M))SSNSTDLPLNIECFMNDK_	LM(1)SSNSTDLPLNIECFMNDK	LM(42)SSNSTDLPLNIECFM(-42)NDK	0	1	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1173.02654	2344.03852	0.73946	0.00086741	2.703	0.0031707	3.4424	0.0040381	1173.5311814864	17.495	0.097563	17.495	17.45	17.548	0	75	52	1.27319752866042	0.0336510508969117	1.27319752866042	512.948395062718	0	13.5574034359821						458	12	5	NaN	NaN	NaN	0.035528	1	35988	42.218	39.624	2	91798			12658	2415	10647	10925	12658	12658	597	
LMTDTINEPILLCR	14	Unmodified	_LMTDTINEPILLCR_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.939133	1687.86371	2.3583	0.0019926	0.12956	0.00010947	2.4878	0.0021021	844.939614905689	14.418	0.21281	14.418	14.338	14.551	0	315	61	1.11400032671325	0.0400295138193232	1.11400032671325	449.83771875554	0	16.1640753127111						970	25	5	NaN	NaN	NaN	5.0326E-24	1	24145	223.96	200.12	1	648290			12659	229	10648	10926	12659	12659		
LMTDTINEPILLCR	14	Oxidation (M)	_LM(Oxidation (M))TDTINEPILLCR_	LM(1)TDTINEPILLCR	LM(110)TDTINEPILLCR	0	1	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.93659	1703.85863	3.043	0.0025955	-1.9875	-0.0016952	1.0555	0.00090025	852.935772834144	12.91	0.2483	12.91	12.857	13.105	0	333	82	1.10198982404297	0.0540957148217671	1.10198982404297	444.95381765117	0	21.842393008863						708	29	3	NaN	NaN	NaN	3.3025E-05	1	24604	108.2	103.67	1	200980			12660	229	10648	10927	12660	12660	45	
LMTIMDSMNDQELDSTDGAK	20	Unmodified	_LMTIMDSMNDQELDSTDGAK_			0	0	0	P61011	P61011	P61011	SRP54	Signal recognition particle 54 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1107.98179	2213.94903	1.2974	0.0014375	0.4419	0.00048962	1.7393	0.0019271	1107.98165610574	13.629	0.053223	13.629	13.593	13.646	0	126	46	1.23951419873743	0.0297531834770868	1.23951419873743	499.550926118253	0	11.9911739422465						242	7	4	NaN	NaN	NaN	7.1927E-16	1	34834	90.376	88.788	1	40483			12661	1321	10649	10928	12661	12661		
LMTQAQLEEATR	12	Unmodified	_LMTQAQLEEATR_			0	0	0	P82650	P82650	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.853383	1389.69221	1.6466	0.0011458	1.75	0.0012178	3.3966	0.0023635	695.854889650667	7.9615	0.25734	7.9615	7.8197	8.077	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.041782965722	0	9.79477918343207						363	30	2	NaN	NaN	NaN	9.3746E-06	1	15141	117.45	95.443	1	143010			12662	1469	10650	10929	12662	12662		
LMVALAK	7	Unmodified	_LMVALAK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	373.235667	744.456782	-1.3244	-0.00049432	-1.1452	-0.00042744	-2.4697	-0.00092176	373.235373097089	7.4826	0.097558	7.4826	7.456	7.5536	0	855	28	0.749315378969369	0.018464305033006	0.749315378969369	305.678499508353	0	7.532397192644						179	12	3	NaN	NaN	NaN	0.056691	1	580	39.761	2.3469	1	54832			12663	558	10651	10930	12663	12663		
LMVHNWEYLGK	11	Unmodified	_LMVHNWEYLGK_			0	0	0	Q9UI12	Q9UI12	Q9UI12	ATP6V1H	V-type proton ATPase subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.904307	1388.69109	-1.3287	-0.0006164	-0.55685	-0.00025833	-1.8856	-0.00087472	463.90408830468	9.7445	0.062054	9.7445	9.709	9.7711	0	825	22	0.769815552739974	0.0143391285682861	0.769815552739974	467.095629689736	0	8.70045332802988						101	8	3	NaN	NaN	NaN	0.043555	1	15099	20.183	17.512	1	20202			12664	3231	10652	10931	12664	12664		
LMVPVTVVFTR	11	Unmodified	_LMVPVTVVFTR_			0	0	0	Q96S52	Q96S52	Q96S52	PIGS	GPI transamidase component PIG-S	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.370484	1260.72641	0.48579	0.00030672	-2.44	-0.0015405	-1.9542	-0.0012338	631.368976985347	16.005	0.10639	16.005	15.961	16.067	0	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	389.995861406214	0	8.18637379854016						228	13	3	NaN	NaN	NaN	0.00069378	1	11250	69.915	66.307	1	74818			12665	2616	10653	10932	12665	12665		
LNAIYQNNLTK	11	Unmodified	_LNAIYQNNLTK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.353877	1290.6932	2.0269	0.0013101	0.14494	9.3679E-05	2.1718	0.0014038	646.353964295864	7.3762	0.14186	7.3762	7.3408	7.4826	0	528	34	0.971237000454584	0.0222222853930807	0.971237000454584	393.170552304462	0	8.99589720879197						247	17	2	NaN	NaN	NaN	0.0032096	1	12104	81.099	55.845	1	141240			12666	475	10654	10933	12666	12666		
LNALLEPGGVLTISER	16	Unmodified	_LNALLEPGGVLTISER_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.477794	1680.94104	1.9554	0.0016454	-3.6212	-0.0030472	-1.6658	-0.0014018	841.475534690579	15.597	0.13293	15.597	15.553	15.686	0	333	49	1.10198982404297	0.0320280154713002	1.10198982404297	445.002768044206	0	12.9334729130271						246	16	3	NaN	NaN	NaN	0.0039523	1	23948	50.314	44.286	1	55417			12667	3048	10655	10934	12667	12667		
LNALLHALNEVDPGDWQK	18	Unmodified	_LNALLHALNEVDPGDWQK_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.353206	2032.03779	-0.88135	-0.00059786	-0.7666	-0.00052003	-1.6479	-0.0011179	678.352494280052	15.961	0.088674	15.961	15.916	16.005	0	660	22	0.882057989648486	0.0142318728029025	0.882057989648486	533.528354269936	0	8.60839963338208						133	11	3	NaN	NaN	NaN	0.023127	1	32186	26.517	24.675	1	26879			12668	253	10656	10935	12668	12668		
LNATNIELATVQPGQNFHMFTK	22	Unmodified	_LNATNIELATVQPGQNFHMFTK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.421403	2473.24238	2.2194	0.0018319	-1.9302	-0.0015932	0.28918	0.00023869	825.754254536718	14.435	0.18621	14.435	14.382	14.568	0	387	163	1.06589869032374	0.108617756391301	1.06589869032374	643.94727750226	0	65.6198465684751						1919	22	6	NaN	NaN	NaN	9.1012E-31	1	36694	277.87	265.95	1	845120			12669	872	10657	10936	12669	12669		
LNATNIELATVQPGQNFHMFTK	22	Oxidation (M)	_LNATNIELATVQPGQNFHM(Oxidation (M))FTK_	LNATNIELATVQPGQNFHM(1)FTK	LNATNIELATVQPGQNFHM(160)FTK	0	1	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	830.753041	2489.23729	2.4253	0.0020149	-0.84149	-0.00069907	1.5839	0.0013158	831.086915203524	12.68	0.11528	12.68	12.635	12.751	0	387	58	1.06589869032374	0.0381566484153506	1.06589869032374	643.924158226797	0	23.0509596593538						622	14	6	NaN	NaN	NaN	1.6519E-16	1	36774	160.04	153.94	1	189020			12670	872	10657	10937	12670	12670	298	
LNAVVNDFWAEISESVDK	18	Unmodified	_LNAVVNDFWAEISESVDK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.50219	2034.98984	1.2431	0.0012661	0.4191	0.00042686	1.6623	0.001693	1019.00402888528	19.862	0.062085	19.862	19.836	19.898	0	153	58	1.22165005014568	0.037749440202328	1.22165005014568	492.621209625444	0	15.2221783095222						273	8	4	NaN	NaN	NaN	4.0612E-14	1	32245	123.24	118.43	1	70079			12671	2641	10658	10938	12671	12671		
LNCQVIGASVDSHFCHLAWVNTPK	24	Unmodified	_LNCQVIGASVDSHFCHLAWVNTPK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	689.08762	2752.32137	1.5213	0.0010483	0.79487	0.00054774	2.3162	0.0015961	689.338891483927	12.857	0.088706	12.857	12.822	12.91	0	498	22	0.991429299781895	0.0141297228120989	0.991429299781895	798.156204059675	0	11.3752195205459						112	11	3	NaN	NaN	NaN	0.023128	1	37764	23.53	18.201	1	23320			12672	1564	10659	10939	12672	12672		
LNCQVIGASVDSHFCHLAWVNTPK	24	Unmodified	_LNCQVIGASVDSHFCHLAWVNTPK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.447735	2752.32137	2.4528	0.0022528	0.2865	0.00026313	2.7393	0.0025159	918.782798894441	13.398	0.2572	13.398	13.327	13.584	0	321	88	1.10999792833052	0.0580548153667424	1.10999792833052	670.209185404122	0	35.0531019226778						1520	30	7	NaN	NaN	NaN	1.9511E-18	1	37765	169.6	134.42	1	888920			12673	1564	10659	10939	12673	12673		
LNCQVIGASVDSHFCHLAWVNTPK	24	Unmodified	_LNCQVIGASVDSHFCHLAWVNTPK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	689.08762	2752.32137	1.3813	0.00095181	1.4187	0.0009776	2.7999	0.0019294	689.339815365362	13.389	0.43454	13.389	13.318	13.753	0	495	94	0.993446994398923	0.0625745549388077	0.993446994398923	799.780558906353	0	50.3760269087692						2147	50	8	NaN	NaN	NaN	1.9161E-24	1	37766	202.26	176.75	1	2835300			12674	1564	10659	10939	12674	12674		
LNDFASTVR	9	Unmodified	_LNDFASTVR_			0	0	0	P20674	P20674	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.766906	1021.51926	0.41813	0.00021398	0.53152	0.00027202	0.94965	0.000486	511.767403175447	6.3121	0.26604	6.3121	6.1614	6.4274	0	690	49	0.86171403876517	0.0325729325950134	0.86171403876517	349.805658662875	0	13.2227115126358						379	31	3	NaN	NaN	NaN	8.3657E-05	1	4774	110.22	44.131	1	303700			12675	783	10660	10940	12675	12675		
LNDGHFMPVLGFGTYAPPEVPR	22	Unmodified	_LNDGHFMPVLGFGTYAPPEVPR_			0	0	0	P42330	P42330	P42330	AKR1C3	Aldo-keto reductase family 1 member C3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	805.403572	2413.18889	0.23464	0.00018898	-0.10941	-8.8116E-05	0.12523	0.00010086	805.737281548383	16.298	0.11526	16.298	16.262	16.377	0	555	61	0.953040030838688	0.0404405239988286	0.953040030838688	575.845378375301	0	24.4349535069452						446	14	4	NaN	NaN	NaN	0.00011063	1	36415	52.773	51.149	1	83716			12676	1048	10661	10941	12676	12676		
LNDGSQITYEK	11	Unmodified	_LNDGSQITYEK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.311874	1266.6092	2.0673	0.0013113	0.50236	0.00031865	2.5696	0.00163	634.312355140585	4.6805	0.20395	4.6805	4.6361	4.8401	0	582	37	0.934820374997243	0.0243080216588687	0.934820374997243	378.504766344558	0	9.84221386736004						414	24	4	NaN	NaN	NaN	2.6009E-11	1	11406	153.33	129.21	1	166180			12677	458	10662	10942	12677	12677		
LNDYIFSFDK	10	Unmodified	_LNDYIFSFDK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.308603	1260.60265	1.1574	0.00073068	-0.86892	-0.00054856	0.28849	0.00018213	631.308028517337	14.391	0.17734	14.391	14.311	14.489	0	570	52	0.942920803299286	0.0344149140577592	0.942920803299286	381.804219770201	0	13.9351675817366						453	21	2	NaN	NaN	NaN	9.8745E-07	1	11225	114.39	99.632	1	378670			12678	1250	10663	10943	12678	12678		
LNEAAAGLNQAATELVQASR	20	Unmodified	_LNEAAAGLNQAATELVQASR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.02944	2026.04433	0.76458	0.00077531	-0.41876	-0.00042464	0.34582	0.00035068	1014.53113845974	14.834	0.079815	14.834	14.799	14.879	0	195	46	1.19381749893585	0.0298349197406598	1.19381749893585	481.412347453381	0	12.0310673626724						371	10	5	NaN	NaN	NaN	1.2214E-10	1	32084	152.02	139.85	1	153950			12679	3406	10664	10944	12679	12679		
LNEAQPSTIATSMR	14	Unmodified	_LNEAQPSTIATSMR_			0	0	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.882672	1517.75079	2.2178	0.0016853	-2.1857	-0.0016608	0.032134	2.4418E-05	759.88098433863	7.6068	0.20392	7.6068	7.527	7.7309	-8.8818E-16	417	88	1.04580932352505	0.0583195380772394	1.04580932352505	422.687167033206	0	23.5711422513083						742	24	4	NaN	NaN	NaN	1.0959E-07	1	19066	126.21	71.629	1	319870			12680	1286	10665	10945	12680	12680		
LNEAQPSTIATSMR	14	Oxidation (M)	_LNEAQPSTIATSM(Oxidation (M))R_	LNEAQPSTIATSM(1)R	LNEAQPSTIATSM(88)R	0	1	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.88013	1533.74571	2.1107	0.0016208	-3.7573	-0.0028852	-1.6466	-0.0012644	767.876824264516	5.2125	0.12418	5.2125	5.1593	5.2835	0	447	37	1.02569221487577	0.0241605388886725	1.02569221487577	414.517320421443	0	9.76410047265841						242	15	3	NaN	NaN	NaN	0.00021401	1	19541	87.573	70.103	1	55456			12681	1286	10665	10946	12681	12681	455	
LNECVDHTPK	10	Unmodified	_LNECVDHTPK_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.860767	1211.56047	-0.27393	-0.0001109	0.92488	0.00037445	0.65095	0.00026354	404.861382107478	2.6409	0.21282	2.6409	2.5966	2.8094	0	870	31	0.739054571787983	0.0205316342299018	0.739054571787983	449.075731303878	0	12.4757480822431						277	25	4	NaN	NaN	NaN	0.038071	1	9772	22.044	14.397	1	63093			12682	1464	10666	10947	12682	12682		
LNECVDHTPK	10	Unmodified	_LNECVDHTPK_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.787512	1211.56047	2.4962	0.0015147	-0.96795	-0.00058734	1.5283	0.00092735	606.787206807704	2.6321	0.31924	2.6321	2.5966	2.9158	0	576	40	0.938871150116794	0.0263318671085498	0.938871150116794	380.331140271729	0	10.6668833541563						539	37	4	NaN	NaN	NaN	3.3007E-07	1	9774	136.84	126.14	1	162890			12683	1464	10666	10947	12683	12683		
LNEDMACSVAGITSDANVLTNELR	24	Unmodified	_LNEDMACSVAGITSDANVLTNELR_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.079265	2592.21597	-0.030474	-2.6362E-05	0.69933	0.00060497	0.66885	0.00057861	865.413536856709	18.062	0.044362	18.062	18.036	18.08	0	510	13	0.983355730988811	0.00807580197927182	0.983355730988811	593.927789076749	0	4.87762776319767						45	6	3	NaN	NaN	NaN	0.01648	1	37213	13.153	13.115	1	6669.3			12684	844	10667	10948	12684	12684		
LNEDMACSVAGITSDANVLTNELR	24	Unmodified	_LNEDMACSVAGITSDANVLTNELR_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1297.11526	2592.21597	0.11685	0.00015157	0.72459	0.00093987	0.84144	0.0010914	1297.6176119325	18.053	0.044342	18.053	18.045	18.089	0	66	28	1.27913350869533	0.0178079416067196	1.27913350869533	515.048954462967	0	7.17044909177116						103	6	3	NaN	NaN	NaN	0.00093425	1	37214	24.599	24.344	1	16406			12685	844	10667	10948	12685	12685		
LNEHFLNTTDFLDTIK	16	Unmodified	_LNEHFLNTTDFLDTIK_			0	0	0	P48735	P48735	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.994907	1919.96289	0.15192	9.738E-05	-0.80471	-0.00051581	-0.65279	-0.00041843	641.328848876768	15.597	0.070979	15.597	15.562	15.633	1.7764E-15	624	37	0.906433495720521	0.0243518545960122	0.906433495720521	548.489212259466	0	14.7354765765873						215	9	4	NaN	NaN	NaN	3.4781E-05	1	30064	90.156	81.782	1	47863			12686	1117	10668	10949	12686	12686		
LNEILQAR	8	Unmodified	_LNEILQAR_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.779816	955.545079	0.40213	0.00019253	-0.19635	-9.4008E-05	0.20578	9.8523E-05	478.779808054713	6.4629	0.25715	6.4629	6.4185	6.6757	0	705	34	0.851531465363931	0.0224078882408908	0.851531465363931	345.989219416276	0	9.10464037628901						407	30	3	NaN	NaN	NaN	0.00060492	1	3344	102.46	46.45	1	177780			12687	21	10669	10950	12687	12687		
LNELESDLTFK	11	Unmodified	_LNELESDLTFK_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.837725	1307.6609	0.49207	0.00032222	-2.7851	-0.0018238	-2.293	-0.0015016	655.337565595348	12.086	0.20397	12.086	12.024	12.227	0	549	31	0.957085760909907	0.0202202547375568	0.957085760909907	387.388703315608	0	8.18432222421376						259	24	3	NaN	NaN	NaN	0.00060071	1	12590	66.664	24.59	1	82478			12688	2069	10670	10951	12688	12688		
LNELLVK	7	Unmodified	_LNELLVK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	414.763104	827.511654	-1.4888	-0.00061748	-0.9096	-0.00037727	-2.3984	-0.00099475	414.762762243986	7.2255	0.18622	7.2255	7.1811	7.3674	0	804	34	0.78414869089473	0.0225140971696576	0.78414869089473	319.308765482558	0	9.16783851924174						355	22	3	NaN	NaN	NaN	0.020645	1	1277	81.32	19.826	1	122070			12689	1608	10671	10952	12689	12689		
LNEQHQLILSK	11	Unmodified	_LNEQHQLILSK_			0	0	0	Q8IYB5	Q8IYB5	Q8IYB5	SMAP1	Stromal membrane-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.585743	1321.7354	-1.6319	-0.0007206	0.074274	3.2798E-05	-1.5576	-0.00068781	441.585715061942	5.3278	0.088648	5.3278	5.3012	5.3898	0	870	28	0.739054571787983	0.0184746054874579	0.739054571787983	448.65454786548	0	11.2152959854045						157	11	3	NaN	NaN	NaN	0.003388	1	13041	47.334	45.535	1	41309			12690	2222	10672	10953	12690	12690		
LNEQVTQEQPLK	12	Unmodified	_LNEQVTQEQPLK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.880456	1425.74636	2.525	0.0018025	-2.4157	-0.0017245	0.10932	7.8041E-05	713.878725185013	6.0283	0.133	6.0283	5.9929	6.1259	0	498	64	0.991429299781895	0.0423423350766804	0.991429299781895	400.941873665852	0	17.1235761992977						380	16	3	NaN	NaN	NaN	1.8581E-07	1	16259	160.98	131.22	1	116110			12691	1766	10673	10954	12691	12691		
LNEQYEHASIHLWDLLEGK	19	Unmodified	_LNEQYEHASIHLWDLLEGK_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	574.540563	2294.13315	-0.32992	-0.00018956	-0.45985	-0.0002642	-0.78977	-0.00045376	574.791115777564	15.952	0.13301	15.952	15.908	16.041	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	733.732033706688	0	14.7171747420506						405	16	5	NaN	NaN	NaN	0.028947	1	35591	27.669	24.417	1	153560			12692	1752	10674	10955	12692	12692		
LNEQYEHASIHLWDLLEGK	19	Unmodified	_LNEQYEHASIHLWDLLEGK_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	765.718325	2294.13315	0.74628	0.00057144	-1.3123	-0.0010048	-0.566	-0.0004334	766.051755587745	15.952	0.1596	15.952	15.908	16.067	0	531	64	0.969216233931596	0.0424361193214464	0.969216233931596	585.793262596987	0	25.6483454558186						814	19	6	NaN	NaN	NaN	6.4251E-15	1	35592	152.59	134.19	1	343670			12693	1752	10674	10955	12693	12693		
LNFEAAWDEVGDEFEK	16	Unmodified	_LNFEAAWDEVGDEFEK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.925788	1897.83702	1.833	0.0017412	-0.32075	-0.00030469	1.5122	0.0014365	950.427064945779	18.426	0.079803	18.426	18.39	18.47	0	273	34	1.14198628764525	0.0219693125101945	1.14198628764525	460.722831202309	0	8.86329719434372						301	10	4	NaN	NaN	NaN	2.2569E-17	1	29550	111.98	99.296	1	99837			12694	3452	10675	10956	12694	12694		
LNFELTDALK	10	Unmodified	_LNFELTDALK_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.318971	1162.62339	0.5032	0.00029303	-3.1238	-0.001819	-2.6206	-0.001526	582.316557937141	14.347	0.26599	14.347	14.302	14.568	0	564	82	0.946969335010767	0.0547196135745827	0.946969335010767	383.793477022968	0	22.1770969541516						345	31	3	NaN	NaN	NaN	0.02877	1	8419	32.14	16.559	1	64003			12695	826	10676	10957	12695	12695		
LNFGDDIPSALR	12	Unmodified	_LNFGDDIPSALR_			0	0	0	Q9UNE7	Q9UNE7	Q9UNE7	STUB1	E3 ubiquitin-protein ligase CHIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.343509	1316.67246	1.188	0.00078329	-2.3674	-0.0015609	-1.1794	-0.00077764	659.843408998163	13.841	0.14186	13.841	13.788	13.93	0	549	43	0.957085760909907	0.0283161971552985	0.957085760909907	387.360981007849	0	11.460404444906						388	17	4	NaN	NaN	NaN	0.00032582	1	12879	96.946	84.35	1	117060			12696	3293	10677	10958	12696	12696		
LNFHPDQEDQFFSLVHEK	18	Unmodified	_LNFHPDQEDQFFSLVHEK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	558.269547	2229.04908	0.54784	0.00030584	-1.324	-0.00073915	-0.77617	-0.00043331	558.519543809585	13.54	0.088639	13.54	13.496	13.584	0	660	40	0.882057989648486	0.0264342930913768	0.882057989648486	710.942740382174	0	21.3061601289256						276	11	5	NaN	NaN	NaN	0.058755	1	34976	22.724	18.874	1	94822			12697	2466	10678	10959	12697	12697		
LNFHPDQEDQFFSLVHEK	18	Unmodified	_LNFHPDQEDQFFSLVHEK_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.023637	2229.04908	1.8252	0.001358	0.91593	0.00068147	2.7411	0.0020395	744.358897956543	13.531	0.1951	13.531	13.46	13.655	0	465	100	1.01360860968299	0.0664277953644203	1.01360860968299	612.731556976178	0	40.1559399666761						819	23	6	NaN	NaN	NaN	6.1256E-08	1	34979	110.9	101.75	1	345730			12698	2466	10678	10959	12698	12698		
LNFSHGTHEYHAETIK	16	Unmodified	_LNFSHGTHEYHAETIK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.639347	1882.89621	2.0078	0.0012622	-0.96601	-0.00060727	1.0418	0.0006549	628.973240172867	3.5721	0.070939	3.5721	3.5366	3.6076	0	564	22	0.946969335010767	0.0141688807218944	0.946969335010767	573.098580763783	0	8.57489797453331						106	9	3	NaN	NaN	NaN	0.072273	1	29211	11.209	10.328	1	19657			12699	699	10679	10960	12699	12699		
LNFSHGTHEYHAETIK	16	Unmodified	_LNFSHGTHEYHAETIK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.455382	1882.89621	3.6535	0.0034432	-2.0054	-0.00189	1.6481	0.0015532	942.954984878649	4.4499	0.25713	4.4499	4.4233	4.6805	0	177	124	1.2057522832638	0.0816385435767342	1.2057522832638	486.476597450871	0	32.9381428103545						1167	30	5	NaN	NaN	NaN	2.976E-13	1	29212	146.75	126.41	1	487910			12700	699	10679	10960	12700	12700		
LNFSHGTHEYHAETIK	16	Unmodified	_LNFSHGTHEYHAETIK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	471.731329	1882.89621	0.75034	0.00035396	2.3866	0.0011258	3.137	0.0014798	471.732423828684	4.4499	0.60294	4.4499	4.4056	5.0085	0	768	199	0.808687310729125	0.135169958881687	0.808687310729125	652.545914626214	0	109.071334838816						2120	69	6	NaN	NaN	NaN	0.00020879	1	29213	78.157	71.41	1	3781000			12701	699	10679	10960	12701	12701		
LNFSHGTHEYHAETIK	16	Unmodified	_LNFSHGTHEYHAETIK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.639347	1882.89621	2.9642	0.0018634	0.62378	0.00039213	3.588	0.0022555	628.97438058282	4.4499	0.3192	4.4499	4.379	4.6982	0	552	211	0.955063035883597	0.142132111399273	0.955063035883597	577.99681974972	0	86.0172630355105						2671	37	6	NaN	NaN	NaN	2.699E-12	1	29214	215.61	172.3	1	2470100			12702	699	10679	10960	12702	12702		
LNGTDPEDVIR	11	Unmodified	_LNGTDPEDVIR_			0	0	0	P19105;O14950;P24844	P19105	P19105	MYL12A;MYL12B;MYL9	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B;Myosin regulatory light polypeptide 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.812042	1227.60953	1.4759	0.00090739	-1.7718	-0.0010893	-0.29595	-0.00018196	614.810620434874	7.8374	0.11531	7.8374	7.7753	7.8906	-8.8818E-16	597	46	0.924688525662974	0.0303913445314729	0.924688525662974	374.530687140169	0	12.3095408178935						320	14	3	NaN	NaN	NaN	0.03952	1	10228	22.004	13.53	1	67073			12703	128	10680	10961	12703	12703		
LNHLCGADFVK	11	Unmodified	_LNHLCGADFVK_			0	0	0	O95394	O95394	O95394	PGM3	Phosphoacetylglucosamine mutase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.216774	1272.62849	-1.6091	-0.0006842	1.119	0.0004758	-0.4901	-0.0002084	425.2176298306	6.6491	0.15076	6.6491	6.6136	6.7644	0	780	19	0.800512323802183	0.0122641870592189	0.800512323802183	486.157084459221	0	7.44813196085886						138	18	3	NaN	NaN	NaN	0.071442	1	11569	15.148	12.78	1	36362			12704	431	10681	10962	12704	12704		
LNHLCGADFVK	11	Unmodified	_LNHLCGADFVK_			0	0	0	O95394	O95394	O95394	PGM3	Phosphoacetylglucosamine mutase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.321522	1272.62849	1.4516	0.00092512	4.4695	0.0028485	5.921	0.0037736	637.826910680181	6.6491	0.088669	6.6491	6.6313	6.72	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.953561915081	0	8.17309722481195						190	11	3	NaN	NaN	NaN	0.063646	1	11570	36.514	29.824	1	53851			12705	431	10681	10962	12705	12705		
LNHVAAGLVSPSLK	14	Unmodified	_LNHVAAGLVSPSLK_			0	0	0	Q05519	Q05519	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.276909	1404.8089	-1.019	-0.00047819	-1.1406	-0.00053526	-2.1596	-0.0010135	469.276289302143	7.864	0.11527	7.864	7.8197	7.935	0	813	28	0.778007628350577	0.0184257549517962	0.778007628350577	472.012958144558	0	11.1788044023201						214	14	3	NaN	NaN	NaN	0.038278	1	15621	40.861	31.883	1	68920			12706	1552	10682	10963	12706	12706		
LNHVGDWGTQFGMLIAHLQDK	21	Unmodified	_LNHVGDWGTQFGMLIAHLQDK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	595.802123	2379.17938	-0.14768	-8.7988E-05	-0.35772	-0.00021313	-0.5054	-0.00030112	596.053083342894	17.779	0.10641	17.779	17.743	17.849	0	633	19	0.900343422309015	0.0121826811722527	0.900343422309015	725.397637696134	0	9.81546365995905						230	13	5	NaN	NaN	NaN	0.04414	1	36252	16.766	15.954	1	62916			12707	1250	10683	10964	12707	12707		
LNHVGDWGTQFGMLIAHLQDK	21	Unmodified	_LNHVGDWGTQFGMLIAHLQDK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	794.067071	2379.17938	1.3502	0.0010722	-0.93009	-0.00073855	0.42015	0.00033363	794.400776239235	17.787	0.13301	17.787	17.699	17.832	0	426	28	1.03977710643793	0.0180991506122403	1.03977710643793	628.305011044223	0	10.9367545745185						289	16	5	NaN	NaN	NaN	2.3672E-08	1	36253	86.798	73.58	1	69931			12708	1250	10683	10964	12708	12708		
LNIDSIIQR	9	Unmodified	_LNIDSIIQR_			0	0	0	P36873	P36873	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.31148	1070.60841	0.36582	0.00019619	-0.43738	-0.00023457	-0.07156	-3.8379E-05	536.311462550244	12.396	0.1596	12.396	12.343	12.502	0	651	43	0.888155670855968	0.028445983405885	0.888155670855968	360.319572085088	0	11.5403694472499						475	19	5	NaN	NaN	NaN	2.1101E-08	1	5981	137.88	106.83	1	268180			12709	992	10684	10965	12709	12709		
LNIEELLK	8	Unmodified	_LNIEELLK_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.292225	970.569897	-0.85901	-0.00041773	-1.1187	-0.00054399	-1.9777	-0.00096172	486.29173910909	15.038	0.12415	15.038	14.994	15.118	0	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	344.257884008247	0	8.27800285072317						233	15	3	NaN	NaN	NaN	0.0036404	1	3652	58.426	19.102	1	60310			12710	2401	10685	10966	12710	12710		
LNIGDLQVTK	10	Unmodified	_LNIGDLQVTK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.819138	1099.62372	0.31417	0.00017305	-0.65956	-0.0003633	-0.34539	-0.00019025	550.818841486542	11.279	0.22171	11.279	11.163	11.385	0	669	67	0.875957769340875	0.0447318703478083	0.875957769340875	355.251821762095	0	18.1413750617706						556	26	4	NaN	NaN	NaN	5.6005E-07	1	6715	127.94	69.258	1	281870			12711	3300	10686	10967	12711	12711		
LNIIIVAEGAIDK	13	Unmodified	_LNIIIVAEGAIDK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.908485	1367.80242	-0.20628	-0.00014129	0.1421	9.7326E-05	-0.064183	-4.396E-05	684.908465682906	17.255	0.15075	17.255	17.202	17.353	0	495	31	0.993446994398923	0.0201755538999089	0.993446994398923	401.92131495496	0	8.16247389051927						263	18	3	NaN	NaN	NaN	0.0022509	1	14444	58.476	46.519	1	62956			12712	578	10687	10968	12712	12712		
LNIISNLDCVNEVIGIR	17	Unmodified	_LNIISNLDCVNEVIGIR_			0	0	0	P30154;P30153	P30154;P30153	P30153	PPP2R1B;PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.019059	1941.03535	-0.3225	-0.00020899	-0.61721	-0.00039996	-0.93971	-0.00060895	648.352753985141	18.665	0.062071	18.665	18.648	18.71	0	648	55	0.890187667287968	0.0365531253994683	0.890187667287968	538.616828280799	0	22.116829057398						318	8	4	NaN	NaN	NaN	1.5752E-05	1	30536	117.41	110.55	1	84771			12713	905;906	10688	10969	12713	12713		
LNIISNLDCVNEVIGIR	17	Unmodified	_LNIISNLDCVNEVIGIR_			0	0	0	P30154;P30153	P30154;P30153	P30153	PPP2R1B;PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.52495	1941.03535	1.8263	0.0017743	-0.40306	-0.00039158	1.4233	0.0013827	971.524660248146	18.674	0.14186	18.674	18.639	18.781	0	243	73	1.16194328902838	0.0478573414685473	1.16194328902838	468.698556751872	0	19.3044420395475						717	17	5	NaN	NaN	NaN	3.6549E-10	1	30537	126.32	109.05	1	317630			12714	905;906	10688	10969	12714	12714		
LNILDTLSK	9	Unmodified	_LNILDTLSK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.802957	1015.59136	0.047113	2.3971E-05	-0.77	-0.00039178	-0.72288	-0.00036781	508.802625693329	13.531	0.30147	13.531	13.478	13.779	0	714	43	0.845418525735192	0.0285250764845424	0.845418525735192	343.217264930684	0	11.5804166042486						531	35	4	NaN	NaN	NaN	0.00015349	1	4652	114.64	67.803	1	328630			12715	1642	10689	10970	12715	12715		
LNILEIVK	8	Unmodified	_LNILEIVK_			0	0	0	Q06546	Q06546	Q06546	GABPA	GA-binding protein alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.305136	940.595718	-1.2552	-0.0005916	-4.9298	-0.0023234	-6.185	-0.002915	471.301972650205	15.003	0.14187	15.003	14.941	15.083	0	726	109	0.837263974740672	0.0734625162797727	0.837263974740672	340.268828191966	0	29.855583286375						489	17	3	NaN	NaN	NaN	0.014717	1	3080	56.014	20.381	1	136990			12716	1561	10690	10971	12716	12716		
LNINPEDGMADYSDPSYVK	19	Unmodified	_LNINPEDGMADYSDPSYVK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.4806	2126.94665	1.0404	0.0011075	0.89592	0.00095369	1.9363	0.0020612	1064.98314651034	12.369	0.1064	12.369	12.316	12.423	0	129	76	1.23753038177212	0.0496362782051067	1.23753038177212	498.878610199273	0	20.0095915632947						718	13	4	NaN	NaN	NaN	8.4016E-15	1	33702	133.93	114.73	1	166550			12717	2640	10691	10972	12717	12717		
LNISFPATGCQK	12	Unmodified	_LNISFPATGCQK_			0	0	0	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.339912	1334.66527	1.727	0.0011542	-1.036	-0.00069241	0.69102	0.00046183	668.339996640487	10.516	0.28379	10.516	10.454	10.738	0	519	58	0.97729762293174	0.0383574228971185	0.97729762293174	395.485934511364	0	15.5222123577948						686	33	5	NaN	NaN	NaN	1.8565E-07	1	13426	152.17	118.74	1	642750			12718	1396	10692	10973	12718	12718		
LNITSLQFK	9	Unmodified	_LNITSLQFK_			0	0	0	Q3B726	Q3B726	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.310949	1062.60735	-0.54455	-0.00028987	-1.1663	-0.00062081	-1.7108	-0.00091068	532.31021428105	12.467	0.079787	12.467	12.44	12.52	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	347.147294201268	0	6.61070853559607						127	10	3	NaN	NaN	NaN	0.013139	1	5802	49.96	18.008	1	34263			12719	1930	10693	10974	12719	12719		
LNITYPMLFK	10	Unmodified	_LNITYPMLFK_			0	0	0	Q92890	Q92890	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.343935	1238.67332	0.29544	0.00018328	-3.0924	-0.0019183	-2.7969	-0.0017351	620.341573140616	15.987	0.13301	15.987	15.908	16.041	0	573	28	0.940896116921038	0.0182247029861181	0.940896116921038	381.057474118818	0	7.38089908286719						246	16	3	NaN	NaN	NaN	0.056622	1	10583	32.14	21.438	1	56438			12720	2440	10694	10975	12720	12720		
LNIWDVGGQK	10	Unmodified	_LNIWDVGGQK_			0	0	0	P36404	P36404	P36404	ARL2	ADP-ribosylation factor-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.303655	1128.59276	-0.18155	-0.00010263	-0.89889	-0.00050815	-1.0804	-0.00061078	565.303255147385	11.846	0.1419	11.846	11.811	11.953	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	359.260383681654	0	9.88802998296603						237	17	3	NaN	NaN	NaN	0.0056504	1	7491	54.436	18.226	1	80810			12721	982	10695	10976	12721	12721		
LNIWDWK	7	Unmodified	_LNIWDWK_			0	0	0	O60508	O60508	O60508	CDC40	Pre-mRNA-processing factor 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.758352	973.502152	-2.1635	-0.0010552	-0.23209	-0.0001132	-2.3955	-0.0011684	487.758094859282	15.012	0.097544	15.012	14.967	15.065	0	777	34	0.802556497112065	0.0224890390033184	0.802556497112065	326.004682364724	0	9.13522230939083						192	12	3	NaN	NaN	NaN	0.018223	1	3705	63.301	35.597	1	41879			12722	264	10696	10977	12722	12722		
LNLAFVANLFNK	12	Unmodified	_LNLAFVANLFNK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.390262	1362.76597	0.91085	0.00062156	-1.5763	-0.0010757	-0.66549	-0.00045412	682.389210918789	19.383	0.12417	19.383	19.348	19.472	0	477	46	1.0055473068722	0.0302403378372377	1.0055473068722	406.83181838341	0	12.2348611017818						401	15	5	NaN	NaN	NaN	2.7692E-17	1	14287	217.66	185.52	1	269110			12723	683	10697	10978	12723	12723		
LNLAQFLNEDLS	12	Unmodified	_LNLAQFLNEDLS_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.856449	1375.69835	0.54289	0.00037397	-0.49347	-0.00033993	0.049416	3.4041E-05	688.856225992025	19.774	0.044328	19.774	19.756	19.8	0	486	28	0.999498404980629	0.0181517240953996	0.999498404980629	404.346328792434	0	7.3432663450526						115	6	3	NaN	NaN	NaN	0.058121	1	14671	21.088	2.5809	1	28587			12724	2687	10698	10979	12724	12724		
LNLATECLPLDK	12	Unmodified	_LNLATECLPLDK_			0	0	0	Q7L0Y3	Q7L0Y3	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.868502	1385.72245	0.9715	0.00067409	-0.78381	-0.00054386	0.18769	0.00013023	694.369289064693	12.298	0.20396	12.298	12.21	12.414	0	477	28	1.0055473068722	0.0181416924529938	1.0055473068722	406.764129200713	0	7.33867982384947						284	24	3	NaN	NaN	NaN	0.013243	1	15015	40.386	36.778	1	65422			12725	2111	10699	10980	12725	12725		
LNLDSIIGR	9	Unmodified	_LNLDSIIGR_			0	0	0	P62136	P62136	P62136	PPP1CA	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.792924	999.571294	-0.20827	-0.0001043	-1.56	-0.00078122	-1.7682	-0.00088552	500.792200969131	13.62	0.23052	13.62	13.558	13.788	0	699	40	0.85560534332665	0.0264746954397943	0.85560534332665	347.42725904468	0	10.7503195748263						326	27	2	NaN	NaN	NaN	0.0015359	1	4281	98.009	62.376	1	191330			12726	1365	10700	10981	12726	12726		
LNLEAINYMAADGDFK	16	Unmodified	_LNLEAINYMAADGDFK_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.929819	1783.84509	1.6758	0.0014964	1.7164	0.0015326	3.3922	0.003029	893.432550707877	15.916	0.29262	15.916	15.854	16.147	0	294	73	1.12800004657306	0.0479627536019942	1.12800004657306	455.291212000856	0	19.3590596779607						1030	34	4	NaN	NaN	NaN	1.1482E-08	1	26790	153.52	135.79	1	408200			12727	600	10701	10982	12727	12727		
LNLEHIATSSAVSK	14	Unmodified	_LNLEHIATSSAVSK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.603462	1468.78856	-0.71095	-0.00034879	-0.22765	-0.00011169	-0.9386	-0.00046048	490.603210447861	8.068	0.15967	8.068	8.0237	8.1833	0	846	31	0.755468431110051	0.0205058884733159	0.755468431110051	458.144146390027	0	12.4355332184726						381	19	4	NaN	NaN	NaN	0.00015297	1	17553	52.863	45.306	1	217650			12728	2605	10702	10983	12728	12728		
LNLEHIATSSAVSK	14	Unmodified	_LNLEHIATSSAVSK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.401555	1468.78856	2.1541	0.0015841	-0.32607	-0.00023979	1.828	0.0013443	735.401468937941	8.068	0.15967	8.068	8.0237	8.1833	0	420	37	1.04379886199097	0.0241272072846639	1.04379886199097	422.001659605463	0	9.75448612422542						504	19	5	NaN	NaN	NaN	2.6758E-07	1	17555	137.4	115.4	1	239460			12729	2605	10702	10983	12729	12729		
LNLLHEFLQTEIK	13	Unmodified	_LNLLHEFLQTEIK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.303124	1596.88754	-1.4888	-0.00079397	-0.02949	-1.5727E-05	-1.5183	-0.0008097	533.303118222723	16.289	0.14187	16.289	16.245	16.386	0	726	31	0.837263974740672	0.0203948812138425	0.837263974740672	507.3682029934	0	12.3589626974409						333	17	4	NaN	NaN	NaN	0.00016033	1	21488	83.775	66.36	1	137220			12730	849	10703	10984	12730	12730		
LNLLHEFLQTEIK	13	Unmodified	_LNLLHEFLQTEIK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.451048	1596.88754	0.9451	0.00075556	1.8265	0.0014602	2.7716	0.0022158	799.452749315726	16.289	0.13299	16.289	16.245	16.377	0	294	31	1.12800004657306	0.0199899698231232	1.12800004657306	455.702117737114	0	8.07577234555396						276	16	4	NaN	NaN	NaN	2.0761E-08	1	21489	121.69	103.59	1	91658			12731	849	10703	10984	12731	12731		
LNLPDYYK	8	Unmodified	_LNLPDYYK_			0	0	0	O60885	O60885	O60885	BRD4	Bromodomain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.26875	1024.52295	0.65609	0.00033675	1.5794	0.00081066	2.2355	0.0011474	513.269405737894	9.8509	0.15074	9.8509	9.7622	9.913	0	678	40	0.869855008346864	0.026448974146953	0.869855008346864	353.096649979577	0	10.7363228090554						219	18	2	NaN	NaN	NaN	0.01772	1	4855	69.905	13.814	1	45393			12732	292	10704	10985	12732	12732		
LNLPINIIGLAPLCENMPSGK	21	Unmodified	_LNLPINIIGLAPLCENMPSGK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1132.6107	2263.20685	0.34527	0.00039106	-1.3384	-0.0015159	-0.99317	-0.0011249	1133.11174249014	19.907	0.044328	19.907	19.889	19.933	0	72	52	1.27517645957152	0.0336510508969117	1.27517645957152	513.853830607933	0	13.5602577020367						214	6	5	NaN	NaN	NaN	1.1433E-05	1	35305	69.201	61.201	1	47769			12733	880	10705	10986	12733	12733		
LNLSCIHSPVVNELMR	16	Unmodified	_LNLSCIHSPVVNELMR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.993967	1880.96007	-0.1916	-0.00012033	-2.3152	-0.0014539	-2.5068	-0.0015743	628.327004876464	14.045	0.19507	14.045	13.912	14.107	0	693	64	0.85967808974117	0.0427608903391541	0.85967808974117	520.274506448976	0	25.8787578536757						984	23	5	NaN	NaN	NaN	2.9049E-05	1	29174	91.939	78.765	1	266630			12734	3357	10706	10987	12734	12734		
LNLSCIHSPVVNELMR	16	Unmodified	_LNLSCIHSPVVNELMR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.993967	1880.96007	-0.13094	-8.2227E-05	-1.2871	-0.00080831	-1.4181	-0.00089054	627.993357146835	14.045	0.070956	14.045	14.001	14.072	0	636	37	0.898312834727904	0.0243788876669334	0.898312834727904	543.656129872513	0	14.7540268904388						166	9	3	NaN	NaN	NaN	0.066317	1	29175	14.949	12.47	1	24883			12735	3357	10706	10987	12735	12735		
LNLVEAFVEDAELR	14	Unmodified	_LNLVEAFVEDAELR_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.42777	1616.84099	1.7677	0.0014308	-0.8144	-0.0006592	0.95331	0.00077163	809.42740000085	19.942	0.044346	19.942	19.924	19.969	0	348	49	1.09197348738011	0.0320721644177464	1.09197348738011	441.100898755684	0	12.9554981995487						195	6	4	NaN	NaN	NaN	6.7189E-06	1	22113	97.594	87.344	1	64839			12736	1063	10707	10988	12736	12736		
LNLYELK	7	Unmodified	_LNLYELK_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.760561	891.506569	-0.71617	-0.00031996	-1.5924	-0.0007114	-2.3085	-0.0010314	446.759845020346	10.197	0.11529	10.197	10.152	10.268	0	735	34	0.831145085810763	0.0224390480115776	0.831145085810763	338.049749945657	0	9.12658295023539						188	14	3	NaN	NaN	NaN	0.050934	1	2197	34.931	5.6211	1	48958			12737	1142	10708	10989	12737	12737		
LNMELSEK	8	Unmodified	_LNMELSEK_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.244418	962.474282	0.044385	2.1404E-05	-0.047303	-2.2811E-05	-0.0029182	-1.4073E-06	482.244364257326	6.3565	0.33698	6.3565	6.2678	6.6047	0	732	67	0.833184998970724	0.0448937159076723	0.833184998970724	338.500224429999	0	18.239086072141						716	39	5	NaN	NaN	NaN	0.033078	1	3489	53.878	33.645	1	359380			12738	892	10709	10990	12738	12738		
LNMTPEEAER	10	Unmodified	_LNMTPEEAER_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.27952	1188.54449	0.74332	0.00044249	1.2227	0.00072787	1.9661	0.0011704	595.280260104838	5.4076	0.20391	5.4076	5.3278	5.5317	0	636	46	0.898312834727904	0.0304630467152948	0.898312834727904	363.980552669662	0	12.343090458897						398	24	2	NaN	NaN	NaN	2.9866E-05	1	9111	108.3	98.91	1	182640			12739	1304	10710	10991	12739	12739		
LNNDDNVDGLLVQLPLPEHIDER	23	Unmodified	_LNNDDNVDGLLVQLPLPEHIDER_			0	0	0	P13995	P13995	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	876.780313	2627.31911	0.8287	0.00072659	-0.21266	-0.00018646	0.61604	0.00054013	877.114440500125	17.406	0.20391	17.406	17.282	17.486	0	516	73	0.979317271586824	0.048428051596847	0.979317271586824	591.446491358028	0	29.2475197071223						1124	24	5	NaN	NaN	NaN	1.4136E-13	1	37350	134.24	124.37	1	253740			12740	691	10711	10992	12740	12740		
LNNELLAK	8	Unmodified	_LNNELLAK_			0	0	0	CON__P34955	CON__P34955	CON__P34955			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.768917	913.523281	0.20188	9.2413E-05	-0.029976	-1.3722E-05	0.1719	7.8691E-05	457.768750436181	5.6647	0.15079	5.6647	5.6203	5.7711	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	342.900745141758	0	6.6300177910594						193	18	3	NaN	NaN	NaN	0.011146	1	2575	58.426	24.613	1	43957		+	12741	32	10712	10993	12741	12741		
LNNLVLFDK	9	Unmodified	_LNNLVLFDK_			0	0	0	P62851	P62851	P62851	RPS25	40S ribosomal protein S25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.310949	1074.60735	0.62545	0.00033669	-0.61454	-0.00033081	0.010914	5.875E-06	538.310764090911	12.174	0.39018	12.174	12.041	12.431	0	660	55	0.882057989648486	0.0365886395546354	0.882057989648486	357.828863910935	0	14.8430958933884						1294	45	5	NaN	NaN	NaN	5.7407E-05	1	6085	133.98	101.85	1	2380000			12742	1404	10713	10994	12742	12742		
LNNPGSTVFTEDCNILLK	18	Unmodified	_LNNPGSTVFTEDCNILLK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.01187	2034.00919	1.3553	0.0013797	1.8137	0.0018464	3.169	0.0032261	1018.0171225657	14.701	0.35468	14.701	14.56	14.914	-1.7764E-15	171	61	1.20972836110953	0.0397553411756255	1.20972836110953	487.815467076758	0	16.0310950357456						898	41	5	NaN	NaN	NaN	1.1166E-06	1	32227	105.08	99.736	1	238230			12743	849	10714	10995	12743	12743		
LNPDLFITGSYDHTVK	16	Unmodified	_LNPDLFITGSYDHTVK_			0	0	0	Q8TED0	Q8TED0	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.464884	1818.91521	1.2189	0.0011098	0.43435	0.00039546	1.6533	0.0015052	910.966310014225	12.493	0.088625	12.493	12.458	12.547	0	162	31	1.21569043230068	0.0198694832228234	1.21569043230068	490.612438539051	0	8.01866606617261						243	11	4	NaN	NaN	NaN	1.0791E-06	1	27697	78.888	51.51	1	49794			12744	2352	10715	10996	12744	12744		
LNPQEYLTSTACR	13	Unmodified	_LNPQEYLTSTACR_			0	0	0	Q92922;Q8TAQ2	Q92922;Q8TAQ2	Q8TAQ2	SMARCC1;SMARCC2	SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.874847	1551.73514	1.8367	0.0014269	-1.4227	-0.0011052	0.41408	0.00032169	776.872309426524	10.223	0.20394	10.223	10.099	10.303	0	423	43	1.04178812298108	0.028152295306344	1.04178812298108	420.978554535575	0	11.3761256473248						440	24	3	NaN	NaN	NaN	0.00031489	1	20113	66.953	48.855	1	148690			12745	2333;2445	10716	10997	12745	12745		
LNPTWNHPDQDTEAGFK	17	Unmodified	_LNPTWNHPDQDTEAGFK_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.306145	1968.8966	0.98578	0.00064796	0.93273	0.00061309	1.9185	0.001261	657.641315988655	7.7664	0.22177	7.7664	7.7221	7.9438	0	678	73	0.869855008346864	0.0488051824774892	0.869855008346864	526.261527455913	0	29.5270931728959						595	26	4	NaN	NaN	NaN	0.0015201	1	31090	58.338	51.131	1	164100			12746	2949	10717	10998	12746	12746		
LNQENEHIYNLWCSGR	16	Unmodified	_LNQENEHIYNLWCSGR_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.314646	2031.92211	0.51647	0.00035033	0.34426	0.00023351	0.86072	0.00058384	678.649141662167	10.436	0.12417	10.436	10.401	10.525	0	672	34	0.873923798053065	0.0223736873989809	0.873923798053065	528.608444845017	0	13.5331251165971						376	15	4	NaN	NaN	NaN	5.3402E-07	1	32183	83.474	78.38	1	115410			12747	2468	10718	10999	12747	12747		
LNQPPEDGISSVK	13	Unmodified	_LNQPPEDGISSVK_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.359356	1382.70416	2.5457	0.0017625	-2.2623	-0.0015663	0.28336	0.00019619	692.357668141103	6.0106	0.30153	6.0106	5.9041	6.2057	0	459	103	1.01763759082241	0.0685780073247659	1.01763759082241	411.663775731062	0	27.7417832065447						1650	35	4	NaN	NaN	NaN	0.00052755	1	14910	60	51.023	1	520950			12748	220	10719	11000	12748	12748		
LNQQAEELQEIHEIQLQEK	19	Unmodified	_LNQQAEELQEIHEIQLQEK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.064161	2319.17065	1.7358	0.0013436	1.0198	0.00078939	2.7556	0.002133	774.399100541105	11.066	0.070911	11.066	11.03	11.101	0	480	40	1.00353128488872	0.0262082910405103	1.00353128488872	606.493839303306	0	15.8392342063358						276	9	4	NaN	NaN	NaN	5.203E-07	1	35809	57.042	53.402	1	64449			12749	1668	10720	11001	12749	12749		
LNQVCFDDDGTSSPQDR	17	Unmodified	_LNQVCFDDDGTSSPQDR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.415793	1952.81703	2.9709	0.0029038	-1.5267	-0.0014922	1.4442	0.0014116	977.41428663047	7.2521	0.17736	7.2521	7.2077	7.3851	0	270	61	1.14398322290989	0.0399524602797869	1.14398322290989	461.434159816718	0	16.1151226456985						771	21	5	NaN	NaN	NaN	4.8269E-19	1	30762	190.06	186.32	1	265570			12750	2239	10721	11002	12750	12750		
LNQVIFPVSYNDK	13	Unmodified	_LNQVIFPVSYNDK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.906473	1535.79839	1.8495	0.0014221	-0.35735	-0.00027477	1.4921	0.0011473	768.907338067681	12.52	0.40788	12.52	12.245	12.653	0	372	109	1.07593298845566	0.0722819328101907	1.07593298845566	434.816124184429	0	29.2112521972196						1068	47	4	NaN	NaN	NaN	0.00012308	1	19608	64.906	42.902	1	245840			12751	2836	10722	11003	12751	12751		
LNQYFQK	7	Unmodified	_LNQYFQK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.747985	939.481417	0.20633	9.7129E-05	-0.30025	-0.00014134	-0.093919	-4.4212E-05	470.74778208343	4.8755	0.30147	4.8755	4.7514	5.0529	0	747	40	0.822982596624503	0.0265336280455829	0.822982596624503	334.470485144062	0	10.7836003840643						519	35	4	NaN	NaN	NaN	0.015457	1	3058	75.915	19.025	1	271550			12752	1575	10723	11004	12752	12752		
LNSDPQFVLAQNVGTTHDLLDICLK	25	Unmodified	_LNSDPQFVLAQNVGTTHDLLDICLK_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	937.81637	2810.42728	1.1472	0.0010758	-0.41077	-0.00038523	0.73641	0.00069062	938.150535658744	17.566	0.10639	17.566	17.53	17.637	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	632.600523357591	0	12.135257363438						321	13	5	NaN	NaN	NaN	2.3716E-06	1	37925	33.828	33.272	1	89207			12753	1706	10724	11005	12753	12753		
LNSGVDYR	8	Unmodified	_LNSGVDYR_			0	0	0	P62312	P62312	P62312	LSM6	U6 snRNA-associated Sm-like protein LSm6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.232699	922.450845	-0.54842	-0.0002535	-0.10798	-4.991E-05	-0.6564	-0.00030341	462.232586551373	3.6431	0.19505	3.6431	3.5721	3.7672	0	774	28	0.804600385996946	0.0183950017446732	0.804600385996946	327.086741070821	0	7.47794964726756						231	23	2	NaN	NaN	NaN	0.020524	1	2743	39.324	26.771	1	66559			12754	1384	10725	11006	12754	12754		
LNSIGNYYK	9	Unmodified	_LNSIGNYYK_			0	0	0	Q15392	Q15392	Q15392	DHCR24	Delta(24)-sterol reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.277106	1070.53966	0.62398	0.00033463	4.1885	0.0022462	4.8125	0.0025808	536.279065632199	6.4451	0.097533	6.4451	6.4185	6.5161	0	663	22	0.880024865079826	0.0142318728029025	0.880024865079826	357.02122184181	0	5.77379210384993						96	12	2	NaN	NaN	NaN	0.011181	1	5971	43.734	32.906	1	33610			12755	1840	10726	11007	12755	12755		
LNSLCMAWLVDHVYAIR	17	Unmodified	_LNSLCMAWLVDHVYAIR_			0	0	0	P30154;P30153	P30154;P30153	P30153	PPP2R1B;PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.685134	2060.03357	0.2217	0.00015246	-0.60654	-0.00041711	-0.38484	-0.00026465	688.018656713636	18.461	0.071018	18.461	18.435	18.506	0	504	28	0.987393073566096	0.0181692995022645	0.987393073566096	597.187112870348	0	10.9890091424747						146	9	3	NaN	NaN	NaN	0.018366	1	32707	31.722	30.628	1	31270			12756	905;906	10727	11008	12756	12756		
LNSNTQVVLLSATMPSDVLEVTK	23	Unmodified	_LNSNTQVVLLSATMPSDVLEVTK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1230.15672	2458.29889	0.36038	0.00044332	0.28747	0.00035364	0.64785	0.00079696	1230.65916512195	18	0.10642	18	17.956	18.062	0	66	52	1.27913350869533	0.0336418368402702	1.27913350869533	515.198680389998	0	13.5499772527115						558	13	5	NaN	NaN	NaN	3.6199E-13	1	36617	135.15	107.69	1	154960			12757	1311	10728	11009	12757	12757		
LNSNTQVVLLSATMPSDVLEVTK	23	Unmodified	_LNSNTQVVLLSATMPSDVLEVTK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.44024	2458.29889	0.25971	0.00021308	0.68326	0.00056058	0.94297	0.00077365	820.775443953397	18	0.10642	18	17.956	18.062	0	528	64	0.971237000454584	0.0424185110568702	0.971237000454584	586.778702672272	0	25.6273997753276						637	13	6	NaN	NaN	NaN	1.2618E-07	1	36618	85.421	67.532	1	201580			12758	1311	10728	11009	12758	12758		
LNSNTQVVLLSATMPSDVLEVTK	23	Unmodified	_LNSNTQVVLLSATMPSDVLEVTK_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.44024	2458.29889	0.62912	0.00051616	0.56195	0.00046105	1.1911	0.00097721	820.775093948534	18	0.079797	18	17.965	18.045	0	399	97	1.0578662689527	0.0643215320029651	1.0578662689527	639.116299142213	0	38.8602422587791						592	10	4	NaN	NaN	NaN	0.00057446	1	36619	69.613	64.271	1	121190			12759	1311	10728	11009	12759	12759		
LNSNTQVVLLSATMPSDVLEVTK	23	Oxidation (M)	_LNSNTQVVLLSATM(Oxidation (M))PSDVLEVTK_	LNSNTQVVLLSATM(1)PSDVLEVTK	LNSNTQVVLLSATM(62)PSDVLEVTK	0	1	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1238.15418	2474.29381	0.46045	0.00057011	-2.0897	-0.0025874	-1.6292	-0.0020172	1238.65334132634	16.041	0.079792	16.041	16.005	16.085	0	63	25	1.28111162701928	0.0158260309307916	1.28111162701928	515.976656040024	0	6.37404449841353						161	10	3	NaN	NaN	NaN	0.00047406	1	36705	62.304	53.892	1	26655			12760	1311	10728	11010	12760	12760	472	
LNSPEETAFQTPK	13	Unmodified	_LNSPEETAFQTPK_			0	0	0	Q9BTX1	Q9BTX1	Q9BTX1	NDC1	Nucleoporin NDC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.364638	1460.71472	2.0906	0.001529	0.13261	9.6988E-05	2.2232	0.001626	731.364249834578	7.6334	0.2572	7.6334	7.4738	7.7309	0	396	40	1.05987478976334	0.0261143777195971	1.05987478976334	428.523162190455	0	10.5584318328173						630	30	4	NaN	NaN	NaN	0.00037285	1	17289	60	48.043	1	169520			12761	2740	10729	11011	12761	12761		
LNTDPMLLQFFK	12	Unmodified	_LNTDPMLLQFFK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.889238	1465.76392	0.52541	0.00038559	1.5301	0.0011229	2.0555	0.0015085	733.890833865659	18.621	0.11527	18.621	18.577	18.692	0	450	55	1.02367897599655	0.0362458215492087	1.02367897599655	413.875272378002	0	14.65425159449						364	14	3	NaN	NaN	NaN	3.7006E-05	1	17456	120.65	107.38	1	126870			12762	2452	10730	11012	12762	12762		
LNTEWSELENLVLK	14	Unmodified	_LNTEWSELENLVLK_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.448702	1686.88285	1.1151	0.00094168	1.2008	0.001014	2.316	0.0019557	844.450277642695	18.914	0.097498	18.914	18.86	18.958	0	273	31	1.14198628764525	0.0199734753997438	1.14198628764525	461.140739564013	0	8.06540614116614						161	12	3	NaN	NaN	NaN	1.1198E-05	1	24109	99.589	85.134	1	41751			12763	681	10731	11013	12763	12763		
LNTFGDEVFNDPK	13	Unmodified	_LNTFGDEVFNDPK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.356813	1494.69907	1.904	0.0014249	1.7166	0.0012846	3.6205	0.0027095	748.358032297686	11.092	0.19509	11.092	11.012	11.208	0	393	49	1.0618830335572	0.03213855919461	1.0618830335572	429.243514469786	0	12.9913254687543						592	23	5	NaN	NaN	NaN	1.045E-07	1	18372	154.66	123.75	1	226900			12764	639	10732	11014	12764	12764		
LNTNVDLYQSLQK	13	Unmodified	_LNTNVDLYQSLQK_			0	0	0	Q99797	Q99797	Q99797	MIPEP	Mitochondrial intermediate peptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.406837	1534.79912	2.3176	0.0017809	0.20856	0.00016026	2.5262	0.0019411	768.407390229028	10.933	0.2217	10.933	10.835	11.057	0	399	46	1.0578662689527	0.03014029110692	1.0578662689527	427.517316583983	0	12.1806477371165						452	26	4	NaN	NaN	NaN	0.061084	1	19581	46.068	29.309	1	108120			12765	2673	10733	11015	12765	12765		
LNTQEIFDDWAR	12	Unmodified	_LNTQEIFDDWAR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.36243	1506.71031	1.6825	0.0012692	-0.93673	-0.00070664	0.7458	0.00056261	754.361639743725	15.553	0.15962	15.553	15.482	15.642	0	444	40	1.02770517576159	0.0261684967549374	1.02770517576159	415.39747308817	0	10.5772819704459						527	19	5	NaN	NaN	NaN	1.5659E-16	1	18693	188.6	177.25	1	283440			12766	1737	10734	11016	12766	12766		
LNVAPLAVFQMLK	13	Unmodified	_LNVAPLAVFQMLK_			0	0	0	Q6NZ67;Q6P582	Q6NZ67	Q6NZ67	MZT2B;MZT2A	Mitotic-spindle organizing protein 2B;Mitotic-spindle organizing protein 2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.423248	1442.83194	0.66806	0.00048262	-1.2342	-0.00089162	-0.56614	-0.000409	722.423169780266	19.712	0.044352	19.712	19.694	19.738	0	471	25	1.00957851518677	0.0161203791387572	1.00957851518677	408.235100448794	0	6.51846735839626						86	6	3	NaN	NaN	NaN	0.0061738	1	16761	53.517	48.021	1	17634			12767	2052	10735	11017	12767	12767		
LNVCVSK	7	Unmodified	_LNVCVSK_			0	0	0	P14866;Q8WVV9	P14866;Q8WVV9	P14866	HNRNPL;HNRNPLL	Heterogeneous nuclear ribonucleoprotein L;Heterogeneous nuclear ribonucleoprotein L-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	410.223288	818.432024	-0.58109	-0.00023838	-2.1023	-0.00086243	-2.6834	-0.0011008	410.222849572571	4.2904	0.34579	4.2904	4.2017	4.5475	0	837	46	0.761618911097395	0.0307352728420092	0.761618911097395	310.190601575403	0	12.5177994316212						477	40	4	NaN	NaN	NaN	0.032485	1	1190	42.835	12.273	1	157270			12768	704;2382	10736	11018	12768	12768		
LNVDEAFEQLVR	12	Unmodified	_LNVDEAFEQLVR_			0	0	0	P10301	P10301	P10301	RRAS	Ras-related protein R-Ras	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.875173	1431.73579	-0.18145	-0.00013008	-1.4736	-0.0010564	-1.6551	-0.0011865	716.873973991797	16.927	0.097584	16.927	16.883	16.98	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	396.844367275613	0	8.16559773298087						238	12	4	NaN	NaN	NaN	0.00046727	1	16452	69.276	59.761	1	61270			12769	623	10737	11019	12769	12769		
LNVDFALIHK	10	Unmodified	_LNVDFALIHK_			0	0	0	P60891	P60891	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.560758	1168.66044	-2.3767	-0.00092823	-1.0879	-0.0004249	-3.4646	-0.0013531	390.560156680237	11.802	0.13301	11.802	11.74	11.873	0	864	25	0.743159753061487	0.0164184368228193	0.743159753061487	451.756528100309	0	9.98054050337862						214	16	3	NaN	NaN	NaN	0.069253	1	8580	14.763	10.223	1	53031			12770	1313	10738	11020	12770	12770		
LNVEFALIHK	10	Unmodified	_LNVEFALIHK_			0	0	0	P11908	P11908	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.345323	1182.67609	0.55125	0.00032653	1.1474	0.00067966	1.6987	0.0010062	592.346339511624	11.704	0.097564	11.704	11.66	11.758	0	528	25	0.971237000454584	0.0161650151283204	0.971237000454584	393.550547551343	0	6.5501525909213						173	12	3	NaN	NaN	NaN	0.00087894	1	8957	85.716	50.935	1	47150			12771	660	10739	11021	12771	12771		
LNVGAPDVTLR	11	Unmodified	_LNVGAPDVTLR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.830037	1153.64552	0.91289	0.00052749	0.61379	0.00035467	1.5267	0.00088216	577.831863962073	10.028	0.15958	10.028	9.9484	10.108	0	588	64	0.93076847747433	0.0425714810140091	0.93076847747433	377.261893707795	0	17.255201410421						487	19	4	NaN	NaN	NaN	0.0059869	1	8173	72.365	56.783	1	185780			12772	1584	10740	11022	12772	12772		
LNVLANVIR	9	Unmodified	_LNVLANVIR_			0	0	0	Q02218;Q9ULD0	Q02218	Q02218	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.319109	1010.62366	-0.35511	-0.0001798	-0.965	-0.0004886	-1.3201	-0.0006684	506.318493277509	12.671	0.13303	12.671	12.626	12.76	0	702	34	0.853568545818287	0.0224047758340703	0.853568545818287	346.548726722855	0	9.09633628821763						269	16	3	NaN	NaN	NaN	0.0087121	1	4535	58.286	33.435	1	87539			12773	1526	10741	11023	12773	12773		
LNVSSDTVQHGVEGLTYLLTESSK	24	Unmodified	_LNVSSDTVQHGVEGLTYLLTESSK_			0	0	0	Q86X83	Q86X83	Q86X83	COMMD2	COMM domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.772935	2576.29698	0.47572	0.00040901	-1.2297	-0.0010572	-0.75396	-0.00064824	860.105876158574	18.178	0.09754	18.178	18.124	18.222	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	590.288266733011	0	10.9788204849471						244	12	4	NaN	NaN	NaN	0.00020952	1	37145	40.363	34.528	1	49803			12774	2185	10742	11024	12774	12774		
LNVTEQEK	8	Unmodified	_LNVTEQEK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.753464	959.492375	1.1368	0.00054654	0.66966	0.00032194	1.8065	0.00086848	480.753850446402	2.9424	0.57637	2.9424	2.7917	3.3681	0	747	61	0.822982596624503	0.0408181397382461	0.822982596624503	334.369898030556	0	16.5840168164596						1252	66	4	NaN	NaN	NaN	0.00038211	1	3428	113.14	54.449	1	1820400			12775	544	10743	11025	12775	12775		
LNVVAFLNELPK	12	Unmodified	_LNVVAFLNELPK_			0	0	0	Q9UBU9	Q9UBU9	Q9UBU9	NXF1	Nuclear RNA export factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.89792	1355.78129	0.13924	9.4527E-05	-0.41145	-0.00027933	-0.27222	-0.00018481	678.89758233012	19.339	0.14186	19.339	19.25	19.392	0	495	40	0.993446994398923	0.0262227841979634	0.993446994398923	401.956971664246	0	10.6099580392769						286	17	3	NaN	NaN	NaN	0.004219	1	14074	74.849	47.902	1	62962			12776	3191	10744	11026	12776	12776		
LNVWDIGGQR	10	Unmodified	_LNVWDIGGQR_			0	0	0	P36405	P36405	P36405	ARL3	ADP-ribosylation factor-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.306729	1156.59891	-0.20392	-0.00011813	-4.1355	-0.0023957	-4.3395	-0.0025139	579.306861414215	12.121	0.1951	12.121	12.032	12.227	0	642	40	0.894250814548268	0.0264086306406944	0.894250814548268	362.44953114572	0	10.7037037464208						491	23	5	NaN	NaN	NaN	0.00099128	1	8244	83.623	58.802	1	183250			12777	983	10745	11027	12777	12777		
LNVWDLSK	8	Unmodified	_LNVWDLSK_			0	0	0	Q09028;Q16576	Q09028;Q16576	Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.768917	973.523281	-0.87633	-0.00042745	-1.8762	-0.00091515	-2.7525	-0.0013426	487.768289609212	12.174	0.19512	12.174	12.112	12.307	0	741	49	0.827064408645228	0.0326454272618066	0.827064408645228	335.959892522036	0	13.2608223973486						536	23	4	NaN	NaN	NaN	0.011001	1	3714	49.96	29.302	1	268790			12778	1582;1890	10746	11028	12778	12778		
LNWLSVDFNNWK	12	Unmodified	_LNWLSVDFNNWK_			0	0	0	Q15185	Q15185	Q15185	PTGES3	Prostaglandin E synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.385708	1534.75686	1.3568	0.0010426	0.27161	0.0002087	1.6284	0.0012513	768.386245766718	18.133	0.31035	18.133	18.027	18.337	0	423	97	1.04178812298108	0.0643748185222626	1.04178812298108	421.019731161815	0	26.0159126313307						1478	36	5	NaN	NaN	NaN	1.0807E-39	1	19577	224.68	184.18	1	1158600			12779	1823	10747	11029	12779	12779		
LNYSDHDVIK	10	Unmodified	_LNYSDHDVIK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.303852	1202.59315	2.1106	0.0012712	-6.3646	-0.0038335	-4.2541	-0.0025622	602.799566935712	5.1238	0.32806	5.1238	4.911	5.2391	0	567	67	0.944945209309785	0.0445770735630894	0.944945209309785	382.823874617314	0	18.0594259353807						547	38	3	NaN	NaN	NaN	0.060687	1	9537	22.898	18.069	1	168530			12780	2499	10748	11030	12780	12780		
LPAAGVGDMVMATVK	15	Unmodified	_LPAAGVGDMVMATVK_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.386005	1458.75746	2.3275	0.0017	0.070651	5.1603E-05	2.3981	0.0017516	730.386464411656	13.859	0.33693	13.859	13.735	14.072	0	411	142	1.04982941439551	0.0943746889370616	1.04982941439551	424.467011201599	0	38.1575726464675						1820	39	4	NaN	NaN	NaN	2.7161E-08	1	17236	138	122.12	1	1124900			12781	1400	10749	11031	12781	12781		
LPAAGVGDMVMATVK	15	Oxidation (M)	_LPAAGVGDM(Oxidation (M))VMATVK_	LPAAGVGDM(0.992)VM(0.008)ATVK	LPAAGVGDM(21)VM(-21)ATVK	0	1	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.383462	1474.75237	1.7753	0.0013109	0.90758	0.00067015	2.6829	0.001981	738.384340639958	10.693	0.18619	10.693	10.622	10.809	0	378	40	1.07192009927972	0.0260891796066893	1.07192009927972	433.35454764062	0	10.5473016453081						540	22	4	NaN	NaN	NaN	7.6751E-05	1	17741	91.245	74.253	2	144000			12782	1400	10749	11032	12782	12782	501;502	
LPAAGVGDMVMATVK	15	2 Oxidation (M)	_LPAAGVGDM(Oxidation (M))VM(Oxidation (M))ATVK_	LPAAGVGDM(1)VM(1)ATVK	LPAAGVGDM(85)VM(85)ATVK	0	2	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.380919	1490.74729	2.3606	0.0017619	-1.094	-0.00081652	1.2667	0.00094541	746.38054904458	7.9793	0.19522	7.9793	7.9083	8.1036	0	363	55	1.08195024817156	0.0361110377354152	1.08195024817156	437.365904206579	0	14.5974703528914						700	23	5	NaN	NaN	NaN	0.00093696	1	18256	84.999	82.698	1	244880			12783	1400	10749	11033	12783	12783	501;502	
LPADTCLLEFAR	12	Unmodified	_LPADTCLLEFAR_			0	0	0	Q8NF37	Q8NF37	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.360844	1404.70714	1.5936	0.0011209	-0.53585	-0.00037689	1.0578	0.00074399	703.360602864109	14.595	0.21281	14.595	14.533	14.746	0	435	49	1.03374239103424	0.0322007138420592	1.03374239103424	418.113769832097	0	13.0240976596868						796	25	5	NaN	NaN	NaN	4.6955E-05	1	15609	92.445	88.552	1	369910			12784	2315	10750	11034	12784	12784		
LPADVSPINYSLCLK	15	Unmodified	_LPADVSPINYSLCLK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.447648	1688.88074	2.0977	0.0017735	0.056103	4.7432E-05	2.1538	0.001821	845.447238562659	14.524	0.133	14.524	14.462	14.595	0	309	49	1.11800162319566	0.0320103814139743	1.11800162319566	451.451244334733	0	12.9258546867413						484	16	4	NaN	NaN	NaN	0.033259	1	24186	50.314	45.485	1	128550			12785	1277	10751	11035	12785	12785		
LPAELQELPGLSHQYWSAPSDK	22	Unmodified	_LPAELQELPGLSHQYWSAPSDK_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.748173	2465.22269	1.6138	0.0013277	-0.00021553	-1.7732E-07	1.6136	0.0013276	823.082921200673	15.136	0.17736	15.136	15.03	15.207	0	396	160	1.05987478976334	0.106702017722266	1.05987478976334	640.319654298975	0	64.4636515188556						2432	21	5	NaN	NaN	NaN	0.00036196	1	36654	94.865	93.242	1	719460			12786	866	10752	11036	12786	12786		
LPAEPPALLQTHPPCR	16	Unmodified	_LPAEPPALLQTHPPCR_			0	0	0	Q92667	Q92667	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.654051	1795.94032	1.4876	0.00089206	1.26	0.00075556	2.7476	0.0016476	599.988769341041	9.8066	0.15072	9.8066	9.7179	9.8686	0	537	19	0.965173861991602	0.0121287944788335	0.965173861991602	584.322400798806	0	7.34284939507506						195	18	3	NaN	NaN	NaN	0.002651	1	27117	38.584	37.703	1	40792			12787	2426	10753	11037	12787	12787		
LPAIALDLLR	10	Unmodified	_LPAIALDLLR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.850242	1093.68593	-0.36667	-0.00020088	-0.61991	-0.00033962	-0.98659	-0.0005405	547.849703196733	17.513	0.25713	17.513	17.371	17.628	0	633	31	0.900343422309015	0.0203016545312636	0.900343422309015	365.166156326688	0	8.2340548823484						465	30	3	NaN	NaN	NaN	0.00043462	1	6559	76.605	18.179	1	143510			12788	2698	10754	11038	12788	12788		
LPALTVHVTQPK	12	Unmodified	_LPALTVHVTQPK_			0	0	0	P07602	P07602	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	435.2626	1302.76597	-1.603	-0.00069773	-0.16651	-7.2477E-05	-1.7695	-0.0007702	435.262277966472	8.414	0.23939	8.414	8.2544	8.4938	0	747	28	0.822982596624503	0.0183694328474171	0.822982596624503	499.679501865884	0	11.1531265574794						291	28	2	NaN	NaN	NaN	0.026078	1	12446	30.349	27.47	1	74069			12789	561	10755	11039	12789	12789		
LPASFDAR	8	Unmodified	_LPASFDAR_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	438.732335	875.450116	-1.9161	-0.00084064	1.2561	0.00055107	-0.66001	-0.00028957	438.732721423454	5.9929	0.22175	5.9929	5.8953	6.117	0	792	52	0.792332785124922	0.0347606318654973	0.792332785124922	322.353315107069	0	14.142043756643						478	26	4	NaN	NaN	NaN	0.058603	1	1941	41.025	10.463	1	201990			12790	566	10756	11040	12790	12790		
LPASHATWMGK	11	Unmodified	_LPASHATWMGK_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	400.206098	1197.59646	-2.0889	-0.00083599	2.7228	0.0010897	0.6339	0.00025369	400.207395309811	5.2745	0.10643	5.2745	5.2391	5.3455	0	810	28	0.78005493425781	0.0184257549517962	0.78005493425781	474.051130880785	0	11.1976087691079						179	13	4	NaN	NaN	NaN	0.068951	1	9387	11.355	1.2675	1	43370			12791	672	10757	11041	12791	12791		
LPAVVTADLR	10	Unmodified	_LPAVVTADLR_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.816399	1053.61824	0.91549	0.00048321	-0.17815	-9.403E-05	0.73734	0.00038918	527.816282210801	10.401	0.38131	10.401	10.143	10.525	0	633	52	0.900343422309015	0.0345152137235557	0.900343422309015	365.338876992223	0	14.005488470801						711	44	2	NaN	NaN	NaN	5.8664E-05	1	5566	114.64	44.734	1	427240			12792	1003	10758	11042	12792	12792		
LPAYLTIQMVR	11	Unmodified	_LPAYLTIQMVR_			0	0	0	P54578	P54578	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.873391	1303.73223	0.934	0.00060979	-1.9227	-0.0012552	-0.98865	-0.00064546	652.872179846969	14.595	0.23054	14.595	14.515	14.746	0	501	55	0.98941132619024	0.0363310729406037	0.98941132619024	400.485366967168	0	14.7057777627775						449	27	4	NaN	NaN	NaN	9.5002E-06	1	12480	111.39	94.74	1	113840			12793	1252	10759	11043	12793	12793		
LPCEMDAQGPK	11	Unmodified	_LPCEMDAQGPK_			0	0	0	Q9UGI8	Q9UGI8	Q9UGI8	TES	Testin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.283748	1244.55294	1.6225	0.0010113	0.81432	0.00050755	2.4368	0.0015188	623.284842487738	5.3632	0.19505	5.3632	5.2923	5.4873	0	579	31	0.936845902828289	0.0202510727946275	0.936845902828289	379.397386732395	0	8.20113966834242						441	23	4	NaN	NaN	NaN	0.00019247	1	10756	72.042	61.34	1	188370			12794	3203	10760	11044	12794	12794		
LPCIFICENNR	11	Unmodified	_LPCIFICENNR_			0	0	0	P08559	P08559	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.344671	1434.67479	1.4125	0.0010146	1.0016	0.00071949	2.4141	0.0017341	718.345896801926	12.635	0.23054	12.635	12.493	12.724	0	474	37	1.00756305028564	0.024187253928307	1.00756305028564	407.442112401065	0	9.78093215202421						537	27	4	NaN	NaN	NaN	0.00045866	1	16527	90.761	84.014	1	160000			12795	583	10761	11045	12795	12795		
LPCIYLVDSGGAYLPR	16	Unmodified	_LPCIYLVDSGGAYLPR_			0	0	0	Q9HCC0	Q9HCC0	Q9HCC0	MCCC2	Methylcrotonoyl-CoA carboxylase beta chain, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.466372	1792.91819	1.8082	0.0016228	-1.5359	-0.0013784	0.27231	0.00024439	897.465264666978	16.138	0.21282	16.138	16.058	16.271	0	276	61	1.13998907770044	0.039930485845072	1.13998907770044	460.112358713703	0	16.1163912761522						726	25	4	NaN	NaN	NaN	0.0034112	1	27049	38.584	0	1	187080			12796	2960	10762	11046	12796	12796		
LPDGQEYQR	9	Unmodified	_LPDGQEYQR_			0	0	0	Q14694	Q14694	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.26727	1104.51999	1.7746	0.00098184	-4.4841	-0.0024809	-2.7094	-0.001499	553.265711527747	3.9622	0.2394	3.9622	3.8204	4.0598	0	660	43	0.882057989648486	0.0284736285227984	0.882057989648486	357.70620579682	0	11.5470793799139						353	28	3	NaN	NaN	NaN	0.01291	1	6836	62.969	42.735	1	96153			12797	1769	10763	11047	12797	12797		
LPDGSEIPLPPILLGR	16	Unmodified	_LPDGSEIPLPPILLGR_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.99308	1685.97161	0.69151	0.00058363	0.32181	0.0002716	1.0133	0.00085523	844.494548201779	19.321	0.15073	19.321	19.242	19.392	0	399	34	1.0578662689527	0.0220937320698047	1.0578662689527	427.174468565342	0	8.92161753572827						416	18	3	NaN	NaN	NaN	0.0016858	1	24088	64.266	62.129	1	86421			12798	2577	10764	11048	12798	12798		
LPDGSEIPLPPILLGR	16	Unmodified	_LPDGSEIPLPPILLGR_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.99308	1685.97161	1.2918	0.0010903	0.20165	0.00017019	1.4935	0.0012605	843.993353679292	19.312	0.15959	19.312	19.215	19.375	0	342	43	1.09598084995137	0.0280554094154091	1.09598084995137	442.565427535969	0	11.3289883333072						546	19	4	NaN	NaN	NaN	0.0034801	1	24089	33.1	32.481	1	163950			12799	2577	10764	11048	12799	12799		
LPDGYEFK	8	Unmodified	_LPDGYEFK_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.739825	967.465098	0.12945	6.2752E-05	1.3374	0.00064829	1.4669	0.00071104	484.740584674995	7.8818	0.3371	7.8818	7.7842	8.1213	0	747	73	0.822982596624503	0.0489681598213404	0.822982596624503	334.330969661664	0	19.8929751646812						989	39	3	NaN	NaN	NaN	0.042078	1	3573	51.864	12.103	1	831270			12800	600	10765	11049	12800	12800		
LPDIFEAQIAGLR	13	Unmodified	_LPDIFEAQIAGLR_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.903734	1441.79291	0.84128	0.00060732	0.38103	0.00027506	1.2223	0.00088239	721.904266591407	17.105	0.51432	17.105	16.794	17.309	0	453	70	1.02166545906632	0.0463045233633073	1.02166545906632	413.125421146642	0	18.7239135332451						2007	59	5	NaN	NaN	NaN	0.00013244	1	16729	106	85.82	1	2011900		+	12801	39	10766	11050	12801	12801		
LPDNVTFEEGALIEPLSVGIHACR	24	Unmodified	_LPDNVTFEEGALIEPLSVGIHACR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.782889	2636.32684	1.1523	0.0010138	2.4163	0.0021258	3.5686	0.0031396	880.454595626426	16.989	0.18623	16.989	16.892	17.078	0	252	52	1.15595906938629	0.0339292424240165	1.15595906938629	698.114545563579	0	20.4907753946117						694	22	6	NaN	NaN	NaN	2.772E-06	1	37384	75.006	74.564	1	197170			12802	1508	10767	11051	12802	12802		
LPDNYTQDTWR	11	Unmodified	_LPDNYTQDTWR_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.828223	1407.64189	1.8505	0.0013043	4.0154	0.0028302	5.8659	0.0041344	704.830906069234	8.3697	0.1774	8.3697	8.2721	8.4495	0	492	64	0.995464410099171	0.0423364838869629	0.995464410099171	402.623422269872	0	17.1233244066899						856	21	6	NaN	NaN	NaN	0.0067046	1	15687	60.547	0	1	224330			12803	1696	10768	11052	12803	12803		
LPDTPQGLLGEAR	13	Unmodified	_LPDTPQGLLGEAR_			0	0	0	P17813	P17813	P17813	ENG	Endoglin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.869891	1365.72523	0.22742	0.00015553	-0.72868	-0.00049832	-0.50125	-0.00034279	683.869285384548	12.015	0.21283	12.015	11.89	12.103	0	492	28	0.995464410099171	0.0181567430371361	0.995464410099171	402.743638104681	0	7.34583042117953						277	25	2	NaN	NaN	NaN	0.047513	1	14372	46.358	20.745	1	92183			12804	742	10769	11053	12804	12804		
LPDVYGVFQFK	11	Unmodified	_LPDVYGVFQFK_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.850438	1311.68632	0.48171	0.00031641	0.7867	0.00051674	1.2684	0.00083315	656.84983989593	16.564	0.25711	16.564	16.431	16.688	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	393.103911511107	0	9.81407928511402						348	30	3	NaN	NaN	NaN	0.025008	1	12713	50.834	34.377	1	168270			12805	1011	10770	11054	12805	12805		
LPEAADFGTTSSLHFVHMR	19	Unmodified	_LPEAADFGTTSSLHFVHMR_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.014196	2115.02076	0.98297	0.00069399	0.81917	0.00057834	1.8021	0.0012723	706.349188942936	12.165	0.13304	12.165	12.112	12.245	0	522	55	0.975277694896658	0.0363411222858506	0.975277694896658	589.756997477241	0	21.9757216600012						518	16	5	NaN	NaN	NaN	3.0681E-05	1	33541	104	102.52	1	139280			12806	1600	10771	11055	12806	12806		
LPEADDIQYPSMLLLTADHDDR	22	Unmodified	_LPEADDIQYPSMLLLTADHDDR_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	843.403966	2527.19007	1.7384	0.0014662	1.9408	0.0016369	3.6792	0.0031031	843.406460553456	16.608	0.16846	16.608	16.519	16.688	0	339	40	1.09798411722691	0.0260424797711383	1.09798411722691	663.252100945278	0	15.7313108186452						400	20	4	NaN	NaN	NaN	3.8231E-08	1	36955	86.766	79.777	1	95571			12807	1105	10772	11056	12807	12807		
LPEDPLLSGLLDSPALK	17	Unmodified	_LPEDPLLSGLLDSPALK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.500935	1776.98732	1.7251	0.0015345	0.67064	0.00059654	2.3958	0.002131	889.501449177482	19.33	0.1685	19.33	19.259	19.428	0	291	121	1.12999890578964	0.0798830549312162	1.12999890578964	456.111585590531	0	32.2439133877138						1590	20	5	NaN	NaN	NaN	1.477E-25	1	26607	205.26	192.68	1	1364500			12808	1127	10773	11057	12808	12808		
LPEEMGLLQGSSGDK	15	Unmodified	_LPEEMGLLQGSSGDK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.882338	1559.75012	2.1598	0.0016866	0.016172	1.2628E-05	2.176	0.0016992	780.882339685303	11.101	0.26602	11.101	11.004	11.27	0	408	55	1.0518390438467	0.0361708486763277	1.0518390438467	425.020732639166	0	14.6156968545026						765	31	5	NaN	NaN	NaN	0.0012369	1	20337	65.173	54.385	1	258100			12809	1061	10774	11058	12809	12809		
LPEEPITR	8	Unmodified	_LPEEPITR_			0	0	0	Q9BYD2	Q9BYD2	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.766374	953.518196	-0.089734	-4.2872E-05	-1.473	-0.00070376	-1.5628	-0.00074664	477.765843811216	5.5051	0.14181	5.5051	5.4697	5.6115	0	729	61	0.835224628594324	0.0407841082438385	0.835224628594324	339.373758606186	0	16.5716570515975						309	17	3	NaN	NaN	NaN	0.012127	1	3313	44.767	33.118	1	90676			12810	2798	10775	11059	12810	12810		
LPEEVATPTTDEEK	14	Unmodified	_LPEEVATPTTDEEK_			0	0	0	O95602	O95602	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.877775	1557.741	2.0828	0.0016243	-2.1808	-0.0017008	-0.098029	-7.6451E-05	779.875489551402	6.4363	0.12413	6.4363	6.3831	6.5072	0	438	67	1.03173026378327	0.0442698808649449	1.03173026378327	416.900038230967	0	17.8885079491599						427	15	4	NaN	NaN	NaN	0.028211	1	20287	27.378	24.275	1	81347			12811	444	10776	11060	12811	12811		
LPEGHLPEGAGLK	13	Unmodified	_LPEGHLPEGAGLK_			0	0	0	Q8IVF2	Q8IVF2	Q8IVF2	AHNAK2	Protein AHNAK2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.910227	1316.70885	-1.8754	-0.000825	-0.73322	-0.00032255	-2.6086	-0.0011475	439.909826677949	6.8707	0.070972	6.8707	6.8264	6.8974	0	885	16	0.728786607772777	0.0102708288454518	0.728786607772777	442.438671780482	0	6.23531198844859						69	9	2	NaN	NaN	NaN	0.027649	1	12886	31.04	27.147	1	15118			12812	2197	10777	11061	12812	12812		
LPEHCIEYVR	10	Unmodified	_LPEHCIEYVR_			0	0	0	Q8TBC4	Q8TBC4	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.326805	1314.63906	2.1651	0.0014253	2.0706	0.0013631	4.2357	0.0027885	658.328356087261	5.7002	0.13303	5.7002	5.6647	5.7978	0	483	34	1.00151498427745	0.0221854416206791	1.00151498427745	405.349296959513	0	8.97924974149697						289	16	4	NaN	NaN	NaN	0.0027807	1	12792	72.042	55.584	1	86983			12813	2336	10778	11062	12813	12813		
LPEHPEGGEPEDDEAPAK	18	Unmodified	_LPEHPEGGEPEDDEAPAK_			0	0	0	Q9NX58	Q9NX58	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.621798	1915.84357	0.6207	0.00039701	1.6091	0.0010292	2.2298	0.0014262	639.622869153912	4.1219	0.2217	4.1219	4.0598	4.2815	0	738	40	0.829104889055312	0.0265188764600823	0.829104889055312	501.704857988386	0	16.0470036108176						492	26	4	NaN	NaN	NaN	0.0016612	1	29963	38.14	34.157	1	116180			12814	3099	10779	11063	12814	12814		
LPEIWETLFR	10	Unmodified	_LPEIWETLFR_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.355888	1302.69722	0.15385	0.00010036	-0.92761	-0.00060513	-0.77376	-0.00050477	652.355451313897	19.357	0.18624	19.357	19.242	19.428	0	549	55	0.957085760909907	0.0364216673662339	0.957085760909907	387.404127278888	0	14.742570453293						432	22	4	NaN	NaN	NaN	0.007163	1	12437	50.834	37.561	1	94867			12815	2013	10780	11064	12815	12815		
LPEIYIQLQR	10	Unmodified	_LPEIYIQLQR_			0	0	0	Q9H223	Q9H223	Q9H223	EHD4	EH domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.869163	1271.72377	0.65534	0.00041737	-3.0467	-0.0019404	-2.3914	-0.001523	636.867278040443	13.682	0.15072	13.682	13.637	13.788	0	531	49	0.969216233931596	0.0323479365760566	0.969216233931596	392.414494943685	0	13.0969733580211						261	18	3	NaN	NaN	NaN	0.045919	1	11554	36.211	9.6318	1	59236			12816	2860	10781	11065	12816	12816		
LPETHQLLQLR	11	Unmodified	_LPETHQLLQLR_			0	0	0	Q7KZN9	Q7KZN9	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.929621	1346.76703	-1.4038	-0.00063161	-1.1771	-0.0005296	-2.5809	-0.0011612	449.929330890302	9.3544	0.097536	9.3544	9.31	9.4076	0	858	46	0.747263789720611	0.0307652687727268	0.747263789720611	453.550973138879	0	18.6729476025681						324	12	3	NaN	NaN	NaN	0.00037393	1	13812	74.269	64.181	1	103370			12817	2109	10782	11066	12817	12817		
LPETNLFETEETR	13	Unmodified	_LPETNLFETEETR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.885935	1577.75732	2.1482	0.0016969	-1.5216	-0.0012019	0.62664	0.00049498	789.885270778293	11.385	0.23947	11.385	11.314	11.553	0	399	67	1.0578662689527	0.0442088234641178	1.0578662689527	427.413252534586	0	17.8618390453386						1020	28	5	NaN	NaN	NaN	1.667E-07	1	20902	101.64	92.382	1	309900			12818	1801	10783	11067	12818	12818		
LPETNLFETEETRK	14	Unmodified	_LPETNLFETEETRK_			0	0	1	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.624703	1705.85228	0.70466	0.00040139	-0.14407	-8.2065E-05	0.5606	0.00031933	569.624726338564	9.1592	0.33699	9.1592	9.0972	9.4342	0	702	43	0.853568545818287	0.0285131915088889	0.853568545818287	516.964650591872	0	17.2690431926834						951	39	6	NaN	NaN	NaN	6.3884E-07	1	24656	175.54	162.36	1	987530			12819	1801	10784	11068	12819	12819		
LPETVHTAVR	10	Unmodified	_LPETVHTAVR_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.81693	1121.61931	2.0393	0.0011457	-0.19201	-0.00010787	1.8473	0.0010379	561.817132412068	3.9711	0.1064	3.9711	3.9179	4.0243	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.345127293782	0	7.40475803381628						134	13	3	NaN	NaN	NaN	5.3796E-05	1	7323	67.507	57.993	1	28582			12820	3437	10785	11069	12820	12820		
LPEYTLSQEGGPAHK	15	Unmodified	_LPEYTLSQEGGPAHK_			0	0	0	O75569	O75569	O75569	PRKRA	Interferon-inducible double-stranded RNA-dependent protein kinase activator A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.909744	1625.80494	2.627	0.0021382	-2.0247	-0.0016479	0.60234	0.00049025	814.408906170874	6.5249	0.14187	6.5249	6.4629	6.6047	0	357	28	1.08596037261705	0.018041831774515	1.08596037261705	438.65136973534	0	7.28762708104483						195	17	3	NaN	NaN	NaN	0.00016126	1	22354	58.313	53.484	1	42447			12821	345	10786	11070	12821	12821		
LPEYTLSQEGGPAHK	15	Unmodified	_LPEYTLSQEGGPAHK_			0	0	0	O75569	O75569	O75569	PRKRA	Interferon-inducible double-stranded RNA-dependent protein kinase activator A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.942255	1625.80494	-0.010278	-5.5801E-06	0.72066	0.00039128	0.71039	0.0003857	542.942647884286	6.5338	0.079795	6.5338	6.4806	6.5604	0	702	16	0.853568545818287	0.0101854025665963	0.853568545818287	517.169485054117	0	6.17124357058594						63	10	2	NaN	NaN	NaN	0.052679	1	22355	11.482	10.743	1	15110			12822	345	10786	11070	12822	12822		
LPFPIIDDR	9	Unmodified	_LPFPIIDDR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.303124	1084.5917	1.0689	0.00058072	-1.2498	-0.000679	-0.18089	-9.828E-05	543.302205148221	14.276	0.57634	14.276	14.125	14.701	-1.7764E-15	648	82	0.890187667287968	0.0548563407396099	0.890187667287968	361.084796173305	0	22.2512525646659						1841	66	3	NaN	NaN	NaN	1.0852E-08	1	6329	159.46	112.11	1	6004000			12823	893	10787	11071	12823	12823		
LPFTDTEQECLVK	13	Unmodified	_LPFTDTEQECLVK_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.387256	1578.75996	2.4865	0.0019653	-1.9383	-0.001532	0.54826	0.00043334	790.385868570949	11.261	0.097534	11.261	11.234	11.332	0	330	37	1.10399226369747	0.024034244886211	1.10399226369747	446.047229604725	0	9.71058285429586						284	12	4	NaN	NaN	NaN	0.00040126	1	20930	80.623	68.041	1	73506			12824	2401	10788	11072	12824	12824		
LPFTPLSYIQGLSHR	15	Unmodified	_LPFTPLSYIQGLSHR_			0	0	0	Q9UM00	Q9UM00	Q9UM00	TMCO1	Transmembrane and coiled-coil domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.985907	1727.93589	-1.9045	-0.0010989	0.42941	0.00024776	-1.4751	-0.00085109	576.985975090319	17.282	0.22171	17.282	17.167	17.388	0	717	28	0.84338031290707	0.0183439172239627	0.84338031290707	510.741579477571	0	11.1088688144478						446	26	4	NaN	NaN	NaN	0.00013278	1	25282	69.327	63.299	1	127070			12825	3284	10789	11073	12825	12825		
LPGATPGLTTVEIVTMSHQALGDVAGR	27	Unmodified	_LPGATPGLTTVEIVTMSHQALGDVAGR_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	897.809326	2690.40615	1.6323	0.0014655	1.0056	0.00090286	2.6379	0.0023683	898.478065722821	17.743	0.11527	17.743	17.699	17.814	0	309	40	1.11800162319566	0.026003062393495	1.11800162319566	675.119843759327	0	15.702287953913						301	14	4	NaN	NaN	NaN	0.023011	1	37578	23.983	23.23	1	77234			12826	491	10790	11074	12826	12826		
LPGELEPVQATQNK	14	Unmodified	_LPGELEPVQATQNK_			0	0	0	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.406837	1522.79912	2.6624	0.0020298	-0.78675	-0.00059982	1.8756	0.00143	762.406210803657	7.9793	0.26614	7.9793	7.8906	8.1567	0	432	88	1.035754240522	0.0582873541493727	1.035754240522	418.610633024817	0	23.5574282616634						1571	31	4	NaN	NaN	NaN	2.899E-08	1	19207	172.51	143.86	1	818270			12827	362	10791	11075	12827	12827		
LPGGELNPGEDEVEGLK	17	Unmodified	_LPGGELNPGEDEVEGLK_			0	0	0	O43809	O43809	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.936156	1751.85776	3.2266	0.0028295	-0.3445	-0.0003021	2.8821	0.0025274	876.935654212386	10.853	0.21283	10.853	10.782	10.995	0	324	88	1.1079963157843	0.0580068776550058	1.1079963157843	447.280153558243	0	23.4164362961801						930	25	5	NaN	NaN	NaN	0.00045404	1	25951	61.23	46.255	1	442680			12828	232	10792	11076	12828	12828		
LPGGNEIGMVAWK	13	Unmodified	_LPGGNEIGMVAWK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.358105	1370.70166	1.866	0.0012808	0.028913	1.9845E-05	1.8949	0.0013006	686.35773719059	12.928	0.18623	12.928	12.857	13.043	0	492	61	0.995464410099171	0.0403622812551794	0.995464410099171	402.728982914313	0	16.3291226819254						465	22	3	NaN	NaN	NaN	0.0036811	1	14514	73.655	52.567	1	135940			12829	1625	10793	11077	12829	12829		
LPGHAGSINEVAFHPDEPIIISASSDK	27	Unmodified	_LPGHAGSINEVAFHPDEPIIISASSDK_			0	0	0	Q96DI7	Q96DI7	Q96DI7	SNRNP40	U5 small nuclear ribonucleoprotein 40 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	701.10807	2800.40317	1.0058	0.00070514	0.022733	1.5938E-05	1.0285	0.00072108	701.35877650169	12.334	0.15074	12.334	12.272	12.423	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	780.20614357023	0	16.26802832389						483	18	6	NaN	NaN	NaN	2.7259E-10	1	37900	121.54	114.41	1	168220			12830	2506	10794	11078	12830	12830		
LPGLIDVHVHLR	12	Unmodified	_LPGLIDVHVHLR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.941861	1367.80375	-1.5611	-0.00071332	-0.080495	-3.6781E-05	-1.6416	-0.0007501	456.94196141604	11.438	0.11531	11.438	11.385	11.5	0	765	22	0.810730346695089	0.0142992632781638	0.810730346695089	491.99515504088	0	8.67756866655998						164	14	3	NaN	NaN	NaN	0.0042721	1	14443	27.589	23.061	1	37788			12831	867	10795	11079	12831	12831		
LPGLLMTIIR	10	Unmodified	_LPGLLMTIIR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.85447	1125.69439	-0.4311	-0.00024308	-0.87032	-0.00049073	-1.3014	-0.00073381	563.853922285413	17.876	0.16843	17.876	17.787	17.956	0	627	34	0.90440375274676	0.0223333690758126	0.90440375274676	366.683169755899	0	9.05488344025088						257	20	3	NaN	NaN	NaN	0.0067053	1	7422	52.591	37.009	1	51556			12832	1240	10796	11080	12832	12832		
LPHELCTLIR	10	Unmodified	_LPHELCTLIR_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.900786	1250.68053	-1.7137	-0.00071617	-1.4283	-0.0005969	-3.1421	-0.0013131	417.900153488632	9.9484	0.10639	9.9484	9.8952	10.002	0	861	16	0.745211914437924	0.0102593767125468	0.745211914437924	452.657864564706	0	6.23176772202982						101	13	2	NaN	NaN	NaN	0.0058932	1	10944	60.892	41.636	1	19946			12833	1590	10797	11081	12833	12833		
LPHLPGLEDLGIQATPLELK	20	Unmodified	_LPHLPGLEDLGIQATPLELK_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.743812	2153.20961	-0.09087	-6.5312E-05	-0.68222	-0.00049034	-0.7731	-0.00055566	719.077739015969	18.337	0.070896	18.337	18.302	18.373	0	615	22	0.912521036363781	0.0142042621835186	0.912521036363781	551.743838883706	0	8.58842024823298						126	9	3	NaN	NaN	NaN	6.8342E-05	1	34087	57.279	54.204	1	21388			12834	1907	10798	11082	12834	12834		
LPHLPGLEDLGIQATPLELK	20	Unmodified	_LPHLPGLEDLGIQATPLELK_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.743812	2153.20961	0.61017	0.00043855	-0.5871	-0.00042197	0.02307	1.6582E-05	719.077782174165	18.328	0.133	18.328	18.24	18.373	0	492	52	0.995464410099171	0.034319796480838	0.995464410099171	601.894458185641	0	20.7510133946603						422	16	4	NaN	NaN	NaN	0.0084044	1	34088	58.338	53.521	1	83051			12835	1907	10798	11082	12835	12835		
LPHSVLLEIQK	11	Unmodified	_LPHSVLLEIQK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	426.258967	1275.75507	-1.2058	-0.000514	-0.96025	-0.00040931	-2.1661	-0.00092331	426.258692844151	9.5583	0.23054	9.5583	9.4785	9.709	0	822	46	0.771863999559055	0.0307267106334287	0.771863999559055	468.746440633292	0	18.6600699734887						750	27	5	NaN	NaN	NaN	0.00026881	1	11660	115.86	99.403	1	510510			12836	3450	10799	11083	12836	12836		
LPHSVLLEIQK	11	Unmodified	_LPHSVLLEIQK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.884813	1275.75507	1.3011	0.00083123	0.82665	0.00052813	2.1277	0.0013594	638.885395249598	9.5583	0.15075	9.5583	9.5051	9.6558	0	540	49	0.963152256458504	0.0323345110128962	0.963152256458504	389.94606846299	0	13.0910926705546						460	18	4	NaN	NaN	NaN	5.2078E-05	1	11661	92.732	69.834	1	204280			12837	3450	10799	11083	12837	12837		
LPHVLLLQLGTTFFK	15	Unmodified	_LPHVLLLQLGTTFFK_			0	0	0	O43809	O43809	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.346664	1726.01816	-2.7226	-0.0015691	1.9376	0.0011167	-0.78493	-0.00045239	576.347814377621	19.179	0.062073	19.179	19.144	19.206	0	741	19	0.827064408645228	0.0122437340752318	0.827064408645228	500.86526993516	0	7.4147322850593						75	8	3	NaN	NaN	NaN	0.0012345	1	25222	57.293	57.059	1	13246			12838	232	10800	11084	12838	12838		
LPIDVTEGEVISLGLPFGK	19	Unmodified	_LPIDVTEGEVISLGLPFGK_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.553699	1983.09284	1.3195	0.0013096	0.0032271	3.2031E-06	1.3227	0.0013128	993.055309570674	19.738	0.07983	19.738	19.712	19.791	0	138	43	1.23157729878518	0.0277943958750091	1.23157729878518	496.712355643559	0	11.2098687288109						319	10	6	NaN	NaN	NaN	1.7938E-19	1	31339	137.4	131.2	1	123840			12839	856	10801	11085	12839	12839		
LPIEETLEDSPQTR	14	Unmodified	_LPIEETLEDSPQTR_			0	0	0	Q9UKG1	Q9UKG1	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.412317	1626.81008	2.1768	0.0017728	-2.6923	-0.0021926	-0.5155	-0.00041983	814.410090508438	10.081	0.15959	10.081	9.9839	10.143	0	399	37	1.0578662689527	0.0241039161855134	1.0578662689527	427.301105918328	0	9.73623069882871						310	19	3	NaN	NaN	NaN	0.002144	1	22382	62.705	49.487	1	71475			12840	3262	10802	11086	12840	12840		
LPIFFFGTHETAFLGPK	17	Unmodified	_LPIFFFGTHETAFLGPK_			0	0	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.345212	1921.01381	0.66269	0.00042502	-0.71251	-0.00045696	-0.049811	-3.1946E-05	641.679160176122	17.752	0.12412	17.752	17.716	17.841	0	576	40	0.938871150116794	0.0263282200540531	0.938871150116794	568.115234374853	0	15.9313265774759						329	15	4	NaN	NaN	NaN	9.0229E-05	1	30088	57.042	53.537	1	81129			12841	336	10803	11087	12841	12841		
LPIGDVATQYFADR	14	Unmodified	_LPIGDVATQYFADR_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.401555	1564.78856	2.2678	0.0017766	-0.68743	-0.00053854	1.5804	0.0012381	783.400845628483	14.48	0.399	14.48	14.302	14.701	0	414	58	1.04781950764076	0.0381829759272949	1.04781950764076	423.384549546411	0	15.4283079723513						1849	46	8	NaN	NaN	NaN	9.2423E-06	1	20492	100.07	85.616	1	1311400			12842	2679	10804	11088	12842	12842		
LPIGDVATQYFADRDMFCAGR	21	Unmodified	_LPIGDVATQYFADRDMFCAGR_			0	0	1	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.712188	2402.11474	1.1042	0.00088523	-0.79416	-0.00063668	0.31001	0.00024854	802.045848427666	16.156	0.21284	16.156	16.041	16.253	0	480	55	1.00353128488872	0.0362959330386661	1.00353128488872	606.36918016652	0	21.9312895287319						1029	25	5	NaN	NaN	NaN	0.018214	1	36359	23.107	22.774	1	271110			12843	2679	10805	11089	12843	12843		
LPIPESQVITINPELPVEEAAEDYAK	26	Unmodified	_LPIPESQVITINPELPVEEAAEDYAK_			0	0	0	O95336	O95336	O95336	PGLS	6-phosphogluconolactonase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	955.83045	2864.46952	1.2913	0.0012343	-2.0284	-0.0019388	-0.73705	-0.0007045	956.1627798734	18.745	0.14189	18.745	18.665	18.807	0	378	73	1.07192009927972	0.0481945603129839	1.07192009927972	647.090664577969	0	29.0938196633568						857	17	5	NaN	NaN	NaN	0.00022451	1	38022	46.353	45.912	1	204350			12844	421	10806	11090	12844	12844		
LPIQEFHLSR	10	Unmodified	_LPIQEFHLSR_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	413.899662	1238.67716	-1.7029	-0.00070482	-0.99908	-0.00041352	-2.702	-0.0011183	413.899393430867	10.037	0.17733	10.037	9.9396	10.117	0	831	31	0.76571780291124	0.0204944614564727	0.76571780291124	465.162715723422	0	12.4500949463845						343	20	3	NaN	NaN	NaN	0.014871	1	10584	30.918	16.156	1	82975			12845	1013	10807	11091	12845	12845		
LPIVNDCDELVAIIAR	16	Unmodified	_LPIVNDCDELVAIIAR_			0	0	0	P20839	P20839	P20839	IMPDH1	Inosine-5-monophosphate dehydrogenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.990211	1809.96587	1.2672	0.001148	0.038866	3.5213E-05	1.306	0.0011833	905.99038446791	18.328	0.10637	18.328	18.266	18.373	0	237	73	1.16593139812432	0.047850764751828	1.16593139812432	470.548944756753	0	19.3117081296541						531	13	3	NaN	NaN	NaN	0.0022966	1	27484	69.641	50.084	1	116340			12846	786	10808	11092	12846	12846		
LPIVNEDDELVAIIAR	16	Unmodified	_LPIVNEDDELVAIIAR_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.496184	1778.97781	1.5869	0.0014132	-0.11943	-0.00010635	1.4675	0.0013068	890.997528486231	18.275	0.17734	18.275	18.195	18.373	0	201	136	1.18983705239708	0.0895049489389703	1.18983705239708	480.260435324623	0	36.1273719410048						1325	21	5	NaN	NaN	NaN	5.529E-12	1	26658	121.86	101.25	1	580910			12847	666	10809	11093	12847	12847		
LPLAVTR	7	Unmodified	_LPLAVTR_			0	0	0		REV__P28340	REV__P28340			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	385.250163	768.485774	-1.3796	-0.00053149	0.27405	0.00010558	-1.1055	-0.00042591	385.250270448584	6.5249	0.2749	6.5249	6.454	6.7289	0	846	31	0.755468431110051	0.0205087467208043	0.755468431110051	308.01472054672	0	8.36169405608393						396	32	3	NaN	NaN	NaN	0.0091261	1	750	72.355	25.552	1	173160	+		12848	3489	10810	11094	12848	12848		
LPLDVLGR	8	Unmodified	_LPLDVLGR_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.774003	881.533452	-2.5135	-0.0011104	-0.53248	-0.00023524	-3.046	-0.0013456	441.773737558132	12.148	0.15076	12.148	12.094	12.245	0	771	31	0.806643990516186	0.0204317832671826	0.806643990516186	328.140752439515	0	8.31159819424687						252	18	3	NaN	NaN	NaN	0.023536	1	2032	63.301	14.243	1	85562			12849	3170	10811	11095	12849	12849		
LPLFGLGR	8	Unmodified	_LPLFGLGR_			0	0	0	P82930	P82930	P82930	MRPS34	28S ribosomal protein S34, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.771263	871.527973	-2.4424	-0.0010668	-0.46051	-0.00020114	-2.9029	-0.0012679	436.771025615909	13.948	0.21281	13.948	13.868	14.081	0	768	28	0.808687310729125	0.0183873254729269	0.808687310729125	329.029862422821	0	7.48123420562399						350	25	3	NaN	NaN	NaN	0.046964	1	1888	29.31	14.646	1	121640			12850	1476	10812	11096	12850	12850		
LPLFPEPLHVFAPR	14	Unmodified	_LPLFPEPLHVFAPR_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.980204	1631.91878	0.15691	8.5515E-05	-0.96187	-0.0005242	-0.80495	-0.00043868	545.314163617404	16.679	0.27487	16.679	16.546	16.821	0	576	64	0.938871150116794	0.0425537884414288	0.938871150116794	568.83558833492	0	25.7821419701187						994	32	5	NaN	NaN	NaN	9.3416E-06	1	22555	120.65	110.4	1	332720			12851	849	10813	11097	12851	12851		
LPLGFTFSFPCHQTK	15	Unmodified	_LPLGFTFSFPCHQTK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.967747	1778.88141	-0.47873	-0.00028435	-0.016112	-9.5701E-06	-0.49484	-0.00029392	594.301923206912	15.154	0.12415	15.154	15.101	15.225	0	678	34	0.869855008346864	0.0223861150035557	0.869855008346864	526.654414996524	0	13.5536913486867						287	15	3	NaN	NaN	NaN	0.0030274	1	26647	55.578	54.771	1	61880			12852	1223	10814	11098	12852	12852		
LPLGLLLHPFK	11	Unmodified	_LPLGLLLHPFK_			0	0	0	O95486	O95486	O95486	SEC24A	Protein transport protein Sec24A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.600665	1246.78016	-3.1747	-0.0013226	1.0187	0.00042438	-2.1561	-0.00089822	416.601034055888	16.351	0.16846	16.351	16.271	16.44	0	783	40	0.798467866007927	0.0265927576463694	0.798467866007927	485.0232110283	0	16.1535676673197						442	20	3	NaN	NaN	NaN	0.054083	1	10839	19.256	19.256	1	99810			12853	439	10815	11099	12853	12853		
LPLGLLLHPFK	11	Unmodified	_LPLGLLLHPFK_			0	0	0	O95486	O95486	O95486	SEC24A	Protein transport protein Sec24A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.397359	1246.78016	-0.038587	-2.4094E-05	-0.4341	-0.00027105	-0.47269	-0.00029514	624.396718781981	16.351	0.14189	16.351	16.289	16.431	0	504	28	0.987393073566096	0.0181667871674303	0.987393073566096	399.85979928962	0	7.35691596890632						162	17	3	NaN	NaN	NaN	0.0079543	1	10840	62.88	52.178	1	33105			12854	439	10815	11099	12854	12854		
LPLGLLLHPFR	11	Unmodified	_LPLGLLLHPFR_			0	0	0	O95487	O95487	O95487	SEC24B	Protein transport protein Sec24B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.936047	1274.78631	-2.4949	-0.0010626	-0.27253	-0.00011608	-2.7674	-0.0011787	425.93597105239	16.644	0.15073	16.644	16.564	16.714	0	771	22	0.806643990516186	0.0143052324654583	0.806643990516186	489.872010338649	0	8.6875165111332						246	18	3	NaN	NaN	NaN	0.012983	1	11634	39.324	39.324	1	58745			12855	440	10816	11100	12855	12855		
LPLHLYDTPGSTYNLQILTR	20	Unmodified	_LPLHLYDTPGSTYNLQILTR_			0	0	0	Q9ULT8	Q9ULT8	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.417987	2314.23213	0.6397	0.00049412	1.8844	0.0014555	2.5241	0.0019497	772.420879432818	15.597	0.11525	15.597	15.571	15.686	0	567	37	0.944945209309785	0.0242878309785073	0.944945209309785	571.094028444299	0	14.6787719531605						223	14	3	NaN	NaN	NaN	0.00079311	1	35769	41.499	30.29	1	45649			12856	3279	10817	11101	12856	12856		
LPLILVGNK	9	Unmodified	_LPLILVGNK_			0	0	0	Q8IXI2	Q8IXI2	Q8IXI2	RHOT1	Mitochondrial Rho GTPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.820953	965.627353	-1.2931	-0.00062564	-0.73667	-0.00035641	-2.0298	-0.00098205	483.820669029444	12.511	0.1241	12.511	12.458	12.582	0	747	25	0.822982596624503	0.0163295196874556	0.822982596624503	334.339895350971	0	6.63393117403496						180	15	3	NaN	NaN	NaN	0.00013042	1	3561	109.11	47.613	1	46006			12857	2213	10818	11102	12857	12857		
LPLISGFYK	9	Unmodified	_LPLISGFYK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.305136	1036.59572	0.50417	0.00026182	-2.3063	-0.0011977	-1.8021	-0.00093585	519.304006031836	14.107	0.31921	14.107	13.912	14.232	0	657	64	0.884090832094921	0.0426660280169164	0.884090832094921	358.819946013479	0	17.3165712321241						1169	37	3	NaN	NaN	NaN	0.0054324	1	5163	45.489	21.914	1	441930			12858	1465	10819	11103	12858	12858		
LPLMECVQMTQDVQK	15	Unmodified	_LPLMECVQMTQDVQK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.441182	1818.86781	2.436	0.0022179	-0.86264	-0.00078538	1.5734	0.0014325	910.44188318113	12.751	0.42562	12.751	12.538	12.963	0	270	79	1.14398322290989	0.0519668056888203	1.14398322290989	461.673876775598	0	20.9720878466866						1172	49	6	NaN	NaN	NaN	0.0049678	1	27688	70.806	67.301	1	352210			12859	1521	10820	11104	12859	12859		
LPLMECVQVTK	11	Unmodified	_LPLMECVQVTK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.348891	1316.68323	1.3302	0.00087708	-0.44582	-0.00029395	0.88439	0.00058312	659.348659930794	11.341	0.34586	11.341	11.172	11.518	0	519	46	0.97729762293174	0.0302947379404193	0.97729762293174	395.541279277985	0	12.2611772700297						551	40	2	NaN	NaN	NaN	0.005816	1	12882	60.547	27.121	1	215730			12860	578	10821	11105	12860	12860		
LPLNFLSGEK	10	Unmodified	_LPLNFLSGEK_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.316232	1116.61791	-0.073344	-4.1023E-05	1.6209	0.00090657	1.5475	0.00086555	559.317544905355	13.478	0.088658	13.478	13.442	13.531	0	654	31	0.886123392477847	0.0203213763976985	0.886123392477847	359.306862535746	0	8.23994723291037						107	11	2	NaN	NaN	NaN	0.035081	1	7187	24.821	16.638	1	22411			12861	2785	10822	11106	12861	12861		
LPLPEPWR	8	Unmodified	_LPLPEPWR_			0	0	0	Q9HB07	Q9HB07	Q9HB07	C12orf10	UPF0160 protein MYG1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.287277	1006.56	0.59733	0.00030123	-1.7638	-0.00088945	-1.1664	-0.00058823	504.286578226459	12.839	0.23056	12.839	12.742	12.972	0	684	76	0.86578508874114	0.0509058331241962	0.86578508874114	351.527707308988	0	20.6688831206621						744	27	3	NaN	NaN	NaN	0.0042406	1	4440	44.767	13.709	1	378710			12862	2949	10823	11107	12862	12862		
LPLQDVYK	8	Unmodified	_LPLQDVYK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.279118	974.543683	1.175	0.00057374	-0.62556	-0.00030545	0.54946	0.00026829	488.278711785018	8.6091	0.76297	8.6091	8.3785	9.1415	0	678	133	0.869855008346864	0.0896255239987789	0.869855008346864	353.336602353727	0	36.4060421909682						4833	87	5	NaN	NaN	NaN	0.010579	1	3733	74.486	28.997	1	11537000			12863	1446	10824	11108	12863	12863		
LPLQLDDAVRPEAEGEEEGR	20	Unmodified	_LPLQLDDAVRPEAEGEEEGR_			0	0	1	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.701111	2222.0815	1.4724	0.0010921	0.18864	0.00013991	1.661	0.001232	742.035517204828	10.879	0.16849	10.879	10.817	10.986	0	555	58	0.953040030838688	0.0384477564572652	0.953040030838688	576.128725977924	0	23.2423153568278						762	20	5	NaN	NaN	NaN	6.4311E-08	1	34915	97.933	94.083	1	374200			12864	705	10825	11109	12864	12864		
LPLSTTSNEACK	12	Unmodified	_LPLSTTSNEACK_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.826834	1319.63912	2.0219	0.0013361	-3.5006	-0.0023133	-1.4787	-0.00097719	660.825359651616	4.911	0.16846	4.911	4.8401	5.0085	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.261389570103	0	8.17901710782991						268	20	4	NaN	NaN	NaN	0.0065392	1	12956	35.33	31.437	1	75128			12865	1975	10826	11110	12865	12865		
LPLTPVFEGLAFK	13	Unmodified	_LPLTPVFEGLAFK_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.415946	1430.81734	1.219	0.00087331	-0.464	-0.00033242	0.75499	0.00054089	716.415191592623	18.497	0.15967	18.497	18.408	18.568	0	432	61	1.035754240522	0.0402620166528518	1.035754240522	418.852960078987	0	16.2817241716505						687	19	4	NaN	NaN	NaN	0.00080684	1	16428	69.276	59.761	1	179370			12866	1593	10827	11111	12866	12866		
LPNFGFVVFDDSEPVQK	17	Unmodified	_LPNFGFVVFDDSEPVQK_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.659636	1936.95708	-0.56869	-0.00036775	0.44681	0.00028894	-0.12188	-7.8813E-05	646.994354372058	18.071	0.097552	18.071	18.018	18.115	0	645	37	0.892219381832517	0.0243856529681402	0.892219381832517	539.854193562706	0	14.7550000433487						286	12	4	NaN	NaN	NaN	0.00043412	1	30457	133.49	123	1	54971			12867	1649	10828	11112	12867	12867		
LPNFGFVVFDDSEPVQK	17	Unmodified	_LPNFGFVVFDDSEPVQK_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.485816	1936.95708	1.8177	0.0017622	0.1111	0.00010771	1.9288	0.00187	969.987502730166	18.071	0.30147	18.071	17.956	18.257	0	240	97	1.16393748060522	0.0637835209005493	1.16393748060522	469.50997889104	0	25.7290447731276						2043	35	5	NaN	NaN	NaN	2.8421E-10	1	30459	93.649	86.073	1	1004600			12868	1649	10828	11112	12868	12868		
LPNFGFVVFDDSEPVQR	17	Unmodified	_LPNFGFVVFDDSEPVQR_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.48889	1964.96323	1.0404	0.0010232	0.28062	0.00027599	1.321	0.0012992	983.489404564847	18.231	0.2926	18.231	18.124	18.417	0	225	67	1.17390432875292	0.0438451177464656	1.17390432875292	473.482400084232	0	17.6844833723599						1347	34	5	NaN	NaN	NaN	0.00011766	1	31016	35.45	28.243	1	320740			12869	3292	10829	11113	12869	12869		
LPNFGSHVLTPAEMEAFK	18	Unmodified	_LPNFGSHVLTPAEMEAFK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.336388	1986.98733	0.21879	0.00014513	-0.34922	-0.00023165	-0.13043	-8.6517E-05	663.670409293541	14.32	0.14185	14.32	14.232	14.373	0	630	58	0.902373728295776	0.0385865321490887	0.902373728295776	545.900570028452	0	23.3433324077274						392	17	3	NaN	NaN	NaN	0.00066513	1	31390	63.947	57.091	1	82276			12870	1784	10830	11114	12870	12870		
LPNLTHLNLSGNK	13	Unmodified	_LPNLTHLNLSGNK_			0	0	0	Q92688	Q92688	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.268414	1419.78341	-1.4554	-0.00069024	-0.89951	-0.00042661	-2.3549	-0.0011169	474.602394689141	10.179	0.18622	10.179	10.081	10.268	0	852	52	0.751366682244005	0.0348478752890904	0.751366682244005	455.803237553412	0	21.1398439057572						230	22	2	NaN	NaN	NaN	0.03391	1	16096	48.822	31.091	1	38765			12871	2428	10831	11115	12871	12871		
LPNLTHLNLSGNK	13	Unmodified	_LPNLTHLNLSGNK_			0	0	0	Q92688	Q92688	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.268414	1419.78341	-0.036551	-1.7335E-05	-0.221	-0.00010481	-0.25755	-0.00012215	474.268277955373	10.223	0.60291	10.223	9.7977	10.401	0	717	67	0.84338031290707	0.0448562890610408	0.84338031290707	511.621667127428	0	27.2112699802708						1898	69	4	NaN	NaN	NaN	0.0010315	1	16097	97.175	87.087	1	909630			12872	2428	10831	11115	12872	12872		
LPNLTHLNLSGNK	13	Unmodified	_LPNLTHLNLSGNK_			0	0	0	Q92688	Q92688	Q92688	ANP32B	Acidic leucine-rich nuclear phosphoprotein 32 family member B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.898983	1419.78341	1.9942	0.0014177	-0.98116	-0.0006975	1.0131	0.00072021	710.898424111753	10.206	0.24829	10.206	10.019	10.268	0	438	55	1.03173026378327	0.0362408161088767	1.03173026378327	417.256733578261	0	14.6566647142346						581	29	3	NaN	NaN	NaN	0.00047964	1	16098	48.822	44.84	1	173040			12873	2428	10831	11115	12873	12873		
LPPEEASPYVVDHGESGPLR	20	Unmodified	_LPPEEASPYVVDHGESGPLR_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.023526	2148.04875	1.1922	0.00085487	0.36232	0.00025979	1.5546	0.0011147	717.357801717279	9.1149	0.31928	9.1149	9.0351	9.3544	0	510	10	0.983355730988811	0.0060555952014284	0.983355730988811	594.582248578968	0	3.66149227373569						160	37	3	NaN	NaN	NaN	0.00032639	1	33996	62.711	55.721	1	42187			12874	1247	10832	11116	12874	12874		
LPPGEYILVPSTFEPNK	17	Unmodified	_LPPGEYILVPSTFEPNK_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.340015	1899.99822	0.76654	0.00048625	-2.1966	-0.0013934	-1.4301	-0.00090714	634.338213346318	15.535	0.275	15.535	15.446	15.721	0	579	31	0.936845902828289	0.0202566836468107	0.936845902828289	566.934672543735	0	12.2583834496755						240	32	3	NaN	NaN	NaN	0.051134	1	29600	14.949	12.648	1	45637			12875	739	10833	11117	12875	12875		
LPPGEYILVPSTFEPNK	17	Unmodified	_LPPGEYILVPSTFEPNK_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.006384	1899.99822	2.2649	0.002154	-2.1553	-0.0020497	0.10964	0.00010427	951.50599466512	15.553	0.35481	15.553	15.429	15.783	0	222	79	1.17589687683038	0.0518169690755632	1.17589687683038	474.399805735191	0	20.9048604070571						1560	41	4	NaN	NaN	NaN	0.001135	1	29603	30.875	27.79	1	539020			12876	739	10833	11117	12876	12876		
LPPGEYVVVPSTFEPNK	17	Unmodified	_LPPGEYVVVPSTFEPNK_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.990734	1871.96692	2.1268	0.0019928	-4.2026	-0.0039378	-2.0758	-0.001945	937.487529990955	13.629	0.26603	13.629	13.451	13.717	0	246	70	1.1599488233373	0.0458727394950837	1.1599488233373	468.016582213473	0	18.5087499752696						855	31	3	NaN	NaN	NaN	0.041685	1	28985	29.115	23.416	1	204850			12877	559	10834	11118	12877	12877		
LPPLPVTPGMEGAGVVIAVGEGVSDR	26	Unmodified	_LPPLPVTPGMEGAGVVIAVGEGVSDR_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	839.78423	2516.33086	1.1542	0.00096928	0.39045	0.0003279	1.5447	0.0012972	840.119076852572	18.816	0.08866	18.816	18.798	18.887	0	291	28	1.12999890578964	0.017989734652339	1.12999890578964	682.607179898285	0	10.8671981673914						230	11	4	NaN	NaN	NaN	0.00050277	1	36907	69.613	68.861	1	49054			12878	2647	10835	11119	12878	12878		
LPPLPVTPGMEGAGVVIAVGEGVSDRK	27	Unmodified	_LPPLPVTPGMEGAGVVIAVGEGVSDRK_			0	0	1	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	882.482551	2644.42582	1.424	0.0012567	0.13028	0.00011497	1.5543	0.0013717	882.480436986531	17.415	0.11526	17.415	17.362	17.477	0	249	55	1.15795408347545	0.0358831313706358	1.15795408347545	699.30816218876	0	21.6704332326051						424	14	5	NaN	NaN	NaN	3.1812E-06	1	37415	70.337	64.76	1	90032			12879	2647	10836	11120	12879	12879		
LPPNTNDEVDEDPTGNK	17	Unmodified	_LPPNTNDEVDEDPTGNK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.921234	1853.82792	3.2391	0.0030057	-2.462	-0.0022845	0.77713	0.00072112	927.919027091365	5.5317	0.64732	5.5317	5.2745	5.9219	0	351	52	1.08996939197032	0.034074328312536	1.08996939197032	439.812903043439	0	13.7493120126072						1705	74	4	NaN	NaN	NaN	0.070319	1	28566	36.181	35.562	1	425590			12880	1841	10837	11121	12880	12880		
LPPVLSHPIFDNR	13	Unmodified	_LPPVLSHPIFDNR_			0	0	0	Q04206	Q04206	Q04206	RELA	Transcription factor p65	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.280542	1503.8198	-2.7249	-0.0013686	0.54912	0.00027581	-2.1757	-0.0010928	502.280609460105	11.997	0.070924	11.997	11.961	12.032	0	831	25	0.76571780291124	0.016395568449004	0.76571780291124	464.258914284697	0	9.94072330338315						117	9	3	NaN	NaN	NaN	0.0014905	1	18639	39.702	27.684	1	19657			12881	1541	10838	11122	12881	12881		
LPPVLSHPIFDNR	13	Unmodified	_LPPVLSHPIFDNR_			0	0	0	Q04206	Q04206	Q04206	RELA	Transcription factor p65	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.280542	1503.8198	-1.2834	-0.00064464	1.0594	0.00053213	-0.22398	-0.0001125	502.281193980428	12.006	0.1064	12.006	11.944	12.05	0	690	37	0.86171403876517	0.0244432719031649	0.86171403876517	522.461957495207	0	14.8200900897651						196	13	3	NaN	NaN	NaN	0.0051961	1	18640	61.577	57.05	1	47096			12882	1541	10838	11122	12882	12882		
LPPYLIFCIK	10	Unmodified	_LPPYLIFCIK_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.362127	1262.7097	-0.27938	-0.00017667	-0.67728	-0.00042829	-0.95666	-0.00060496	632.361616576163	17.317	0.11525	17.317	17.282	17.397	0	552	25	0.955063035883597	0.0161806815311534	0.955063035883597	386.713817444893	0	6.55170694359811						167	14	2	NaN	NaN	NaN	0.065685	1	11308	26.456	22.849	1	36041			12883	1949	10839	11123	12883	12883		
LPQFGISTPGSDLHVNAK	18	Unmodified	_LPQFGISTPGSDLHVNAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.667014	1879.97921	0.49091	0.00030813	-0.44535	-0.00027953	0.045565	2.86E-05	628.001009936885	11.633	0.15081	11.633	11.562	11.713	0	591	79	0.928742107665821	0.0527404460650701	0.928742107665821	562.073972470872	0	31.9184753065446						590	18	5	NaN	NaN	NaN	0.00047478	1	29156	69.327	65.591	1	187510			12884	1584	10840	11124	12884	12884		
LPQPPEGQTYNN	12	Unmodified	_LPQPPEGQTYNN_			0	0	0	Q15819	Q15819	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.322773	1356.63099	1.3257	0.00090056	-1.4241	-0.00096741	-0.098416	-6.6856E-05	679.321813022461	7.066	0.24837	7.066	6.9417	7.19	0	543	52	0.961130371139249	0.0343577961345568	0.961130371139249	388.878941114747	0	13.9013642488538						627	29	3	NaN	NaN	NaN	0.0059777	1	14082	37.749	31.059	1	141980			12885	1871	10841	11125	12885	12885		
LPQSQLSHQDLQLVK	15	Unmodified	_LPQSQLSHQDLQLVK_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.656338	1732.94718	0.19099	0.00011052	0.71431	0.00041334	0.9053	0.00052386	578.656549414407	8.68	0.1154	8.68	8.6357	8.7511	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	536.613968217874	0	13.5395420709228						285	14	4	NaN	NaN	NaN	9.353E-05	1	25420	106.47	91.491	1	112440			12886	1845	10842	11126	12886	12886		
LPQSQLSHQDLQLVK	15	Unmodified	_LPQSQLSHQDLQLVK_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.480868	1732.94718	2.1359	0.0018529	-0.5188	-0.00045005	1.6171	0.0014028	867.480256742682	8.68	0.062181	8.68	8.6534	8.7156	0	198	28	1.1918274123006	0.0179157007419768	1.1918274123006	481.162629011382	0	7.23289763318223						139	8	3	NaN	NaN	NaN	0.00020539	1	25422	53.051	37.435	1	31209			12887	1845	10842	11126	12887	12887		
LPQTEQELK	9	Unmodified	_LPQTEQELK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.295496	1084.57644	1.5859	0.00086164	-0.4112	-0.0002234	1.1747	0.00063823	543.295130967288	4.5563	0.20394	4.5563	4.4765	4.6805	0	648	40	0.890187667287968	0.0264122944165538	0.890187667287968	361.084856076739	0	10.7135606103298						365	24	3	NaN	NaN	NaN	0.00031141	1	6324	102.55	84.209	1	124920			12888	3042	10843	11127	12888	12888		
LPSEGPRPAHVVVGDVLQAADVDK	24	Unmodified	_LPSEGPRPAHVVVGDVLQAADVDK_			0	0	1	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.774722	2468.30234	1.1548	0.00095129	0.25958	0.00021383	1.4144	0.0011651	824.109218518162	12.192	0.19511	12.192	12.094	12.29	0	507	55	0.985374541851584	0.0363310729406037	0.985374541851584	595.306426149034	0	21.9491373805841						917	23	5	NaN	NaN	NaN	1.1816E-06	1	36673	59.357	57.835	1	268490			12889	894	10844	11128	12889	12889		
LPSGSGAASPTGSAVDIR	18	Unmodified	_LPSGSGAASPTGSAVDIR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.923383	1641.83221	2.8103	0.0023099	-1.0872	-0.00089359	1.7231	0.0014163	821.923384837366	7.3496	0.23941	7.3496	7.2521	7.4915	0	369	67	1.07793901817685	0.0441235550902728	1.07793901817685	435.375393353639	0	17.8213329600774						1226	28	4	NaN	NaN	NaN	4.7903E-14	1	22811	176.58	167.78	1	375890			12890	1584	10845	11129	12890	12890		
LPSGVFSLEFQDFVNK	16	Unmodified	_LPSGVFSLEFQDFVNK_			0	0	0	Q02750	Q02750	Q02750	MAP2K1	Dual specificity mitogen-activated protein kinase kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.969802	1825.92505	1.1404	0.0010423	0.86545	0.00079099	2.0058	0.0018333	914.471756467779	18.541	0.13301	18.541	18.488	18.621	0	258	37	1.15196821829984	0.0239484029047847	1.15196821829984	464.882753838216	0	9.66450229749802						298	16	4	NaN	NaN	NaN	0.00021337	1	27881	80.623	76.773	1	61954			12891	1529	10846	11130	12891	12891		
LPSIPLVPVSAQK	13	Unmodified	_LPSIPLVPVSAQK_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.91357	1347.81259	1.3085	0.00088314	-0.01504	-1.0151E-05	1.2935	0.00087299	674.913555549262	14.196	0.22168	14.196	14.063	14.285	0	459	76	1.01763759082241	0.0504005871247442	1.01763759082241	411.769255126775	0	20.3937161966827						1058	26	3	NaN	NaN	NaN	0.00016959	1	13844	112.93	104.45	1	460140			12892	1867	10847	11131	12892	12892		
LPSLGAGFSQGLK	13	Unmodified	_LPSLGAGFSQGLK_			0	0	0	Q8IZL8	Q8IZL8	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.858795	1273.70304	0.98349	0.00062733	-1.4378	-0.00091708	-0.45426	-0.00028975	637.858401170644	12.511	0.18618	12.511	12.361	12.547	0	525	34	0.973257487423603	0.0222253598495629	0.973257487423603	394.044125144671	0	8.9984126411706						319	22	4	NaN	NaN	NaN	0.00017256	1	11605	85.821	61.985	1	83632			12893	2232	10848	11132	12893	12893		
LPSLWADNK	9	Unmodified	_LPSLWADNK_			0	0	0	O75976	O75976	O75976	CPD	Carboxypeptidase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.279649	1042.54475	0.32557	0.00017004	2.9491	0.0015403	3.2747	0.0017103	522.281056210542	12.662	0.23943	12.662	12.564	12.804	0	660	70	0.882057989648486	0.0468008560973249	0.882057989648486	357.968090353861	0	18.9933238865187						635	28	2	NaN	NaN	NaN	0.050065	1	5292	41.025	4.4551	1	215310			12894	376	10849	11133	12894	12894		
LPSLWADNK	9	Unmodified	_LPSLWADNK_			0	0	0	O75976	O75976	O75976	CPD	Carboxypeptidase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.279649	1042.54475	-0.036333	-1.8976E-05	4.7336	0.0024722	4.6972	0.0024533	522.282156588164	10.711	0.18618	10.711	10.596	10.782	0	696	13	0.857641857947968	0.00814662437723901	0.857641857947968	348.059214412327	0	3.30616755068189						80	22	2	NaN	NaN	NaN	0.036727	1	5294	39.01	12.787	1	29323			12895	376	10849	11133	12895	12895		
LPSSIEYSDLSR	12	Unmodified	_LPSSIEYSDLSR_			0	0	0	Q15386	Q15386	Q15386	UBE3C	Ubiquitin-protein ligase E3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.846081	1365.67761	1.5426	0.0010549	1.999	0.001367	3.5417	0.0024219	683.846708360947	9.6026	0.17735	9.6026	9.5583	9.7356	0	465	43	1.01360860968299	0.0282067707809603	1.01360860968299	410.084525768837	0	11.4118606616789						362	21	3	NaN	NaN	NaN	0.00018194	1	14365	87.942	62.085	1	88893			12896	1838	10850	11134	12896	12896		
LPSSPVYEDAASFK	14	Unmodified	_LPSSPVYEDAASFK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.874839	1509.73512	2.0533	0.001552	0.042291	3.1967E-05	2.0956	0.001584	755.875112183445	10.684	0.2394	10.684	10.578	10.817	0	423	46	1.04178812298108	0.0301694200551728	1.04178812298108	421.082103939001	0	12.1942289331345						667	28	3	NaN	NaN	NaN	0.00018952	1	18789	93.162	85.586	1	369040			12897	1742	10851	11135	12897	12897		
LPSSVFASEFEEDVGLLNK	19	Unmodified	_LPSSVFASEFEEDVGLLNK_			0	0	0	Q96GA3	Q96GA3	Q96GA3	LTV1	Protein LTV1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.0255	2080.03645	0.59367	0.00061802	0.1081	0.00011253	0.70177	0.00073056	1041.52717705594	18.958	0.088672	18.958	18.914	19.002	0	135	37	1.23356193185193	0.0238172335935567	1.23356193185193	497.351584327418	0	9.60271110528527						244	11	4	NaN	NaN	NaN	0.0023729	1	33029	34.472	30.623	1	50763			12898	2537	10852	11136	12898	12898		
LPSTGEGTQFYLFENVDNAQQFK	23	Unmodified	_LPSTGEGTQFYLFENVDNAQQFK_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.422125	2632.24455	1.8065	0.0015868	4.4428	0.0039026	6.2492	0.0054895	878.428775559611	16.475	0.25717	16.475	16.298	16.555	0	348	46	1.09197348738011	0.0300655815217838	1.09197348738011	659.477301645245	0	18.1575549255796						329	30	3	NaN	NaN	NaN	0.00047885	1	37367	46.528	46.013	1	103010			12899	910	10853	11137	12899	12899		
LPTAEVMFCTLNTHK	15	Unmodified	_LPTAEVMFCTLNTHK_			0	0	0	O14908	O14908	O14908	GIPC1	PDZ domain-containing protein GIPC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.960264	1760.85896	-0.059254	-3.4839E-05	-0.1097	-6.4502E-05	-0.16896	-9.9341E-05	588.294860674334	13.017	0.1596	13.017	12.91	13.07	0	669	40	0.875957769340875	0.0264342930913768	0.875957769340875	530.391270982243	0	16.0059295105087						350	19	4	NaN	NaN	NaN	0.00054401	1	26166	48.822	46.275	1	56911			12900	124	10854	11138	12900	12900		
LPTDLTACDNR	11	Unmodified	_LPTDLTACDNR_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.303526	1274.5925	1.6378	0.0010454	2.7494	0.0017549	4.3872	0.0028004	638.304574410462	6.5161	0.18622	6.5161	6.4629	6.6491	0	543	52	0.961130371139249	0.0343910976262953	0.961130371139249	389.13127219381	0	13.923867118671						450	22	4	NaN	NaN	NaN	0.00010906	1	11611	85.622	76.645	1	185660			12901	2614	10855	11139	12901	12901		
LPTFGAPEQLVDLK	14	Unmodified	_LPTFGAPEQLVDLK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.424499	1526.83444	1.5774	0.0012058	0.26938	0.00020592	1.8468	0.0014117	764.424967273704	15.695	0.19506	15.695	15.588	15.783	0	351	82	1.08996939197032	0.0541628493019599	1.08996939197032	440.511746702811	0	21.8899462023217						1168	23	4	NaN	NaN	NaN	1.1403E-07	1	19338	130.99	102.66	1	444110			12902	1745	10856	11140	12902	12902		
LPTGINPLTLHIMR	14	Unmodified	_LPTGINPLTLHIMR_			0	0	0	Q5JSH3	Q5JSH3	Q5JSH3	WDR44	WD repeat-containing protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.972832	1574.89667	-0.56927	-0.00029942	-1.8684	-0.00098272	-2.4377	-0.0012821	525.972074021747	14.338	0.097537	14.338	14.294	14.391	0	720	37	0.841341816837976	0.0244602575158872	0.841341816837976	509.900448249062	0	14.824291414057						284	12	4	NaN	NaN	NaN	6.4041E-05	1	20838	92.707	74.976	1	96072			12903	1967	10857	11141	12903	12903		
LPTGQISGPEIK	12	Unmodified	_LPTGQISGPEIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.350803	1238.68705	1.6859	0.0010459	-0.7079	-0.00043915	0.97804	0.00060673	620.350366045109	8.139	0.12415	8.139	8.0858	8.21	0	579	91	0.936845902828289	0.0606860161886099	0.936845902828289	379.417104522605	0	24.5774811821048						499	15	4	NaN	NaN	NaN	0.0075643	1	10591	36.952	28.95	1	201080			12904	1584	10858	11142	12904	12904		
LPTGYYFGASAGTGDLSDNHDIISMK	26	Unmodified	_LPTGYYFGASAGTGDLSDNHDIISMK_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	910.762042	2729.2643	1.6875	0.0015369	0.3918	0.00035683	2.0793	0.0018937	911.096557432465	14.249	0.10642	14.249	14.214	14.32	0	414	40	1.04781950764076	0.0261287930352008	1.04781950764076	632.693144806234	0	15.7770571313893						430	13	6	NaN	NaN	NaN	0.010621	1	37685	24.457	20.698	1	109650			12905	1607	10859	11143	12905	12905		
LPTIDPNTR	9	Unmodified	_LPTIDPNTR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.782556	1025.55056	0.70628	0.00036288	-3.0424	-0.0015631	-2.3361	-0.0012003	513.780907339859	6.9151	0.36369	6.9151	6.7023	7.066	0	675	73	0.871889544407995	0.0488662035005966	0.871889544407995	353.917841414582	0	19.8357938479463						664	42	3	NaN	NaN	NaN	0.037119	1	4875	43.734	26.339	1	234060			12906	2808	10860	11144	12906	12906		
LPTVPLSGMYNK	12	Unmodified	_LPTVPLSGMYNK_			0	0	0	O14562	O14562	O14562	UBFD1	Ubiquitin domain-containing protein UBFD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.355031	1318.69551	0.20565	0.0001358	-0.44076	-0.00029106	-0.23511	-0.00015525	660.355729334841	11.988	0.29266	11.988	11.828	12.121	0	501	43	0.98941132619024	0.0282535899920621	0.98941132619024	400.437707753896	0	11.4348830590043						735	34	4	NaN	NaN	NaN	9.6526E-05	1	12938	104.39	59.574	1	221740			12907	105	10861	11145	12907	12907		
LPVALDPGAK	10	Unmodified	_LPVALDPGAK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.792392	979.570232	0.56415	0.00027688	-0.75038	-0.00036828	-0.18622	-9.1397E-05	490.792021852426	8.343	0.34597	8.343	8.1833	8.5293	0	696	52	0.857641857947968	0.0346303797525405	0.857641857947968	348.350725379723	0	14.0659155044467						767	40	4	NaN	NaN	NaN	0.0035949	1	3842	58.916	46.363	1	364170			12908	518	10862	11146	12908	12908		
LPVDFSNIPTYLLK	14	Unmodified	_LPVDFSNIPTYLLK_			0	0	0	Q9NXR7	Q9NXR7	Q9NXR7	BRE	BRCA1-A complex subunit BRE	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.455799	1618.89705	1.5853	0.0012848	-1.0671	-0.00086487	0.51812	0.00041991	810.454702247218	18.665	0.088674	18.665	18.63	18.718	0	288	34	1.13199748998575	0.0219844292788041	1.13199748998575	457.26359674811	0	8.88047835212672						261	11	4	NaN	NaN	NaN	7.2562E-08	1	22164	101.64	93.269	1	68489			12909	3105	10863	11147	12909	12909		
LPVDIAYK	8	Unmodified	_LPVDIAYK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.768386	917.522219	-1.1532	-0.00053022	-0.18719	-8.6064E-05	-1.3404	-0.00061628	459.768339840799	9.0174	0.13304	9.0174	8.973	9.106	0	744	37	0.82502364452135	0.0244942818992349	0.82502364452135	335.415653940037	0	9.95821833177882						158	16	3	NaN	NaN	NaN	0.042335	1	2660	42.835	12.273	1	43923			12910	718	10864	11148	12910	12910		
LPVDLAEELGHR	12	Unmodified	_LPVDLAEELGHR_			0	0	0	P42771	P42771	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.245498	1347.71466	-1.1838	-0.00053302	-0.18478	-8.3198E-05	-1.3686	-0.00061621	450.245636968072	11.429	0.26612	11.429	11.376	11.642	0	798	94	0.788241307691771	0.0633606290352691	0.788241307691771	478.41881768586	0	38.4563926491647						989	31	5	NaN	NaN	NaN	0.00063437	1	13839	92.428	79.154	1	767510			12911	1058	10865	11149	12911	12911		
LPVDLAEELGHR	12	Unmodified	_LPVDLAEELGHR_			0	0	0	P42771	P42771	P42771	CDKN2A	Cyclin-dependent kinase inhibitor 2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.864608	1347.71466	1.3638	0.00092035	-0.20435	-0.00013791	1.1594	0.00078244	674.86424531194	11.438	0.21292	11.438	11.376	11.589	0	462	31	1.01562323939346	0.02014212547595	1.01562323939346	410.954486926102	0	8.15016486380671						328	25	4	NaN	NaN	NaN	0.0013708	1	13840	81.335	64.683	1	116670			12912	1058	10865	11149	12912	12912		
LPVDYYGIPFAAPTALASR	19	Unmodified	_LPVDYYGIPFAAPTALASR_			0	0	0	Q5T6F2	Q5T6F2	Q5T6F2	UBAP2	Ubiquitin-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.53838	2021.06221	0.7223	0.00073063	0.57862	0.00058529	1.3009	0.0013159	1012.04034666003	17.929	0.12412	17.929	17.867	17.991	0	159	34	1.21767724410157	0.0218519349767741	1.21767724410157	491.042132813134	0	8.81204014369689						363	15	4	NaN	NaN	NaN	0.0015949	1	32012	36.181	27.814	1	75613			12913	1993	10866	11150	12913	12913		
LPVGTTATLYFR	12	Unmodified	_LPVGTTATLYFR_			0	0	0	Q9NZ01	Q9NZ01	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.874445	1337.73434	1.924	0.0012889	-1.4747	-0.00098786	0.44934	0.000301	669.872776034424	12.822	0.29265	12.822	12.724	13.017	0	483	85	1.00151498427745	0.056522848773085	1.00151498427745	405.27651886839	0	22.8727315585867						731	34	4	NaN	NaN	NaN	0.00024089	1	13539	90.263	71.926	1	301730			12914	3124	10867	11151	12914	12914		
LPVHTEISWK	10	Unmodified	_LPVHTEISWK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	403.892396	1208.65536	-1.9198	-0.00077538	0.20619	8.3277E-05	-1.7136	-0.00069211	403.892506416078	8.3164	0.097587	8.3164	8.281	8.3785	0	810	34	0.78005493425781	0.0225140971696576	0.78005493425781	474.001817262662	0	13.6807326045563						182	12	3	NaN	NaN	NaN	0.0038726	1	9702	60.892	53.245	1	45218			12915	2355	10868	11152	12915	12915		
LPVHTEISWK	10	Unmodified	_LPVHTEISWK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.334956	1208.65536	1.1608	0.00070264	-1.1539	-0.00069849	0.00687	4.1587E-06	605.334299847534	8.3164	0.10645	8.3164	8.2721	8.3785	0	567	52	0.944945209309785	0.0344006212312528	0.944945209309785	382.802068681903	0	13.9358651078669						243	13	2	NaN	NaN	NaN	0.00094947	1	9703	76.572	37.562	1	78510			12916	2355	10868	11152	12916	12916		
LPVIDPESGNTLYILTHK	18	Unmodified	_LPVIDPESGNTLYILTHK_			0	0	0	P54619	P54619	P54619	PRKAG1	5-AMP-activated protein kinase subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.701724	2009.08334	0.81046	0.00054358	-0.44563	-0.00029888	0.36483	0.00024469	671.035511732555	15.42	0.12426	15.42	15.349	15.473	0	531	34	0.969216233931596	0.0222253598495629	0.969216233931596	586.292961271269	0	13.4444426179922						292	15	4	NaN	NaN	NaN	6.7789E-07	1	31799	97.084	89.508	1	75929			12917	1253	10869	11153	12917	12917		
LPVPAAAPTPWETHK	15	Unmodified	_LPVPAAAPTPWETHK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.959469	1613.85658	0.062569	3.3722E-05	-1.0289	-0.00055454	-0.96633	-0.00052081	538.959239449214	10.303	0.17732	10.303	10.179	10.356	0	702	55	0.853568545818287	0.0366496414922302	0.853568545818287	517.201800390146	0	22.2070748228699						564	21	4	NaN	NaN	NaN	0.035275	1	22017	40.533	38.232	1	136670			12918	1594	10870	11154	12918	12918		
LPVPASAPIPFFHR	14	Unmodified	_LPVPASAPIPFFHR_			0	0	0	Q8WWI5	Q8WWI5	Q8WWI5	SLC44A1	Choline transporter-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.961033	1547.86127	-1.2358	-0.00063888	-0.50603	-0.0002616	-1.7419	-0.00090048	517.294650701428	14.764	0.10642	14.764	14.71	14.817	0	708	34	0.849494101904619	0.0224141150004975	0.849494101904619	514.919456637224	0	13.5862790467688						219	13	3	NaN	NaN	NaN	0.040271	1	19984	53.517	52.014	1	53299			12919	2390	10871	11155	12919	12919		
LPVPESITGFAR	12	Unmodified	_LPVPESITGFAR_			0	0	0	Q8N5K1	Q8N5K1	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.858795	1285.70304	0.77474	0.00049882	-0.071786	-4.622E-05	0.70295	0.0004526	644.361094389004	13.167	0.13302	13.167	13.088	13.221	0	543	61	0.961130371139249	0.0404181457297914	0.961130371139249	389.095235882558	0	16.3625127442679						347	16	3	NaN	NaN	NaN	0.0029693	1	11939	85.716	68.32	1	82046			12920	2257	10872	11156	12920	12920		
LPVVIGGLLDVDCSEDVIK	19	Unmodified	_LPVVIGGLLDVDCSEDVIK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.034374	2040.08129	0.040275	2.7429E-05	-0.43374	-0.00029539	-0.39347	-0.00026796	681.368673283967	18.754	0.10642	18.754	18.701	18.807	0	579	28	0.936845902828289	0.0182272273449463	0.936845902828289	566.652643513795	0	11.024765682125						204	13	4	NaN	NaN	NaN	0.0041775	1	32349	59.731	58.46	1	47537			12921	1503	10873	11157	12921	12921		
LPVVIGGLLDVDCSEDVIK	19	Unmodified	_LPVVIGGLLDVDCSEDVIK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.04792	2040.08129	0.89919	0.00091812	0.89424	0.00091306	1.7934	0.0018312	1021.55044252181	18.763	0.18621	18.763	18.674	18.86	0	120	106	1.2434810169581	0.0694717823637154	1.2434810169581	501.415901630079	0	28.0135007424281						1098	22	3	NaN	NaN	NaN	2.7234E-26	1	32350	135.24	132.53	1	379370			12922	1503	10873	11157	12922	12922		
LPVVVPLHSLDEK	13	Unmodified	_LPVVVPLHSLDEK_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.616932	1444.82897	-0.82107	-0.00039626	0.59043	0.00028495	-0.23064	-0.00011131	482.617039847446	11.749	0.16847	11.749	11.669	11.837	0	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	514.008518974978	0	12.3598156586268						359	20	4	NaN	NaN	NaN	0.0050256	1	16835	51.531	37.733	1	100590			12923	379	10874	11158	12923	12923		
LPWDSLLTR	9	Unmodified	_LPWDSLLTR_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.808574	1099.60259	-0.3451	-0.00019008	-1.9725	-0.0010865	-2.3176	-0.0012766	550.807300164341	15.686	0.23053	15.686	15.588	15.819	0	636	31	0.898312834727904	0.0203101032426732	0.898312834727904	364.318193535143	0	8.23693020719696						401	27	3	NaN	NaN	NaN	0.033456	1	6712	37.722	18.467	1	124580			12924	1030	10875	11159	12924	12924		
LPYDVTPEQALAHEEVK	17	Unmodified	_LPYDVTPEQALAHEEVK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.998429	1937.97346	1.9946	0.0012905	1.1692	0.00075644	3.1637	0.0020469	647.334297996811	11.048	0.2749	11.048	10.95	11.225	0	537	76	0.965173861991602	0.0505192007893855	0.965173861991602	583.994500623324	0	30.5674828118619						1186	32	6	NaN	NaN	NaN	4.7616E-11	1	30470	126.17	98.795	1	805960			12925	1095	10876	11160	12925	12925		
LPYELQK	7	Unmodified	_LPYELQK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.752736	889.490919	-0.43356	-0.00019326	0.018951	8.4477E-06	-0.41461	-0.00018481	445.753049825657	6.454	0.22166	6.454	6.3565	6.5781	0	738	55	0.829104889055312	0.0367465403567987	0.829104889055312	337.231525438804	0	14.9463500007115						402	26	3	NaN	NaN	NaN	0.027508	1	2151	58.687	35.378	1	96525			12926	450	10877	11161	12926	12926		
LPYPLQMK	8	Unmodified	_LPYPLQMK_			0	0	0	Q9NPA0	Q9NPA0	Q9NPA0	EMC7	ER membrane protein complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.278063	988.541574	0.10587	5.2436E-05	-0.79606	-0.00039427	-0.69019	-0.00034184	495.277820874225	10.764	0.29261	10.764	10.587	10.879	0	711	49	0.847456455381371	0.032586506939132	0.847456455381371	344.170439431201	0	13.2340869451774						602	34	3	NaN	NaN	NaN	0.03944	1	4025	49.058	36.505	1	139560			12927	2983	10878	11162	12927	12927		
LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR	32	Unmodified	_LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR_			0	0	1	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1042.81794	3125.43198	2.205	0.0022994	0.29814	0.0003109	2.5031	0.0026103	1043.15267350639	11.004	0.044354	11.004	10.986	11.03	0	366	55	1.07994477139643	0.0360911337192322	1.07994477139643	651.67182728761	0	21.7784980145618						219	6	4	NaN	NaN	NaN	0.00056595	1	38388	37.744	37.744	1	38695			12928	1509	10879	11163	12928	12928		
LQAAVDGPMDK	11	Unmodified	_LQAAVDGPMDK_			0	0	0	P51572	P51572	P51572	BCAP31	B-cell receptor-associated protein 31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.786981	1143.55941	1.7824	0.0010209	-1.5309	-0.0008769	0.25143	0.00014402	572.786059906119	5.6381	0.34583	5.6381	5.5317	5.8775	0	633	55	0.900343422309015	0.0365429879949484	0.900343422309015	364.967945860773	0	14.8132578454642						1058	30	5	NaN	NaN	NaN	0.00084199	1	7878	64.064	34.963	1	470980			12929	1191	10880	11164	12929	12929		
LQAEAFQAR	9	Unmodified	_LQAEAFQAR_			0	0	0	CON__Q03247;P02649	CON__Q03247	CON__Q03247	APOE	Apolipoprotein E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.274898	1032.53524	0.62761	0.00032465	-0.020388	-1.0546E-05	0.60722	0.0003141	517.275343327332	5.4076	0.31035	5.4076	5.2391	5.5494	0	684	40	0.86578508874114	0.0264636674362559	0.86578508874114	351.408418070083	0	10.7411823454121						285	21	3	NaN	NaN	NaN	0.066078	1	5065	27.736	7.0778	1	239680		+	12930	35	10881	11165	12930	12930		
LQAEAPHIVVGTPGR	15	Unmodified	_LQAEAPHIVVGTPGR_			0	0	0	Q14240	Q14240	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.622968	1543.84708	1.1473	0.00059155	-1.46	-0.0007528	-0.31274	-0.00016125	515.623510211358	7.8995	0.18611	7.8995	7.802	7.9881	0	639	58	0.896281965493857	0.0386025930625213	0.896281965493857	543.292354813258	0	23.3994373358602						768	22	4	NaN	NaN	NaN	0.0016375	1	19859	44.82	36.346	1	292800			12931	1739	10882	11166	12931	12931		
LQAEAPHIVVGTPGR	15	Unmodified	_LQAEAPHIVVGTPGR_			0	0	0	Q14240	Q14240	Q14240	EIF4A2	Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.930814	1543.84708	2.4973	0.0019303	-0.64832	-0.0005011	1.849	0.0014292	772.930300598656	7.8995	0.14186	7.8995	7.8374	7.9793	0	363	64	1.08195024817156	0.0421382628414091	1.08195024817156	437.227511717608	0	17.0285166451855						506	17	3	NaN	NaN	NaN	0.004832	1	19863	43.518	37.491	1	126810			12932	1739	10882	11166	12932	12932		
LQAEAQELLGYQVDPR	16	Unmodified	_LQAEAQELLGYQVDPR_			0	0	0	Q8TAE8	Q8TAE8	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.47324	1828.93193	2.7386	0.0025071	0.91749	0.00083993	3.6561	0.003347	915.476285847735	12.919	0.20396	12.919	12.848	13.052	0	237	43	1.16593139812432	0.027916769999432	1.16593139812432	470.511835757926	0	11.2658178019699						444	24	3	NaN	NaN	NaN	1.1482E-08	1	27944	117.77	113.78	1	108540			12933	2332	10883	11167	12933	12933		
LQAEAQQLR	9	Unmodified	_LQAEAQQLR_			0	0	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.793455	1055.57236	1.8443	0.00097524	-1.7259	-0.00091263	0.1184	6.2611E-05	528.794007606623	3.98	0.28376	3.98	3.909	4.1928	0	675	40	0.871889544407995	0.026448974146953	0.871889544407995	353.784498159657	0	10.7321358599053						426	33	2	NaN	NaN	NaN	4.3394E-06	1	5616	133.68	82.25	1	257070			12934	1888	10884	11168	12934	12934		
LQAEEVAQQK	10	Unmodified	_LQAEEVAQQK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.303852	1142.59315	2.0058	0.001148	-0.26638	-0.00015245	1.7395	0.0009955	572.30380455682	3.5898	0.24823	3.5898	3.5544	3.8026	0	606	52	0.918606045818476	0.0344817318374574	0.918606045818476	372.37472509353	0	13.9778368237077						515	29	3	NaN	NaN	NaN	3.226E-07	1	7857	134.66	86.501	1	136540			12935	1816	10885	11169	12935	12935		
LQAEIEGLK	9	Unmodified	_LQAEIEGLK_			0	0	0	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.787307	999.560061	0.86417	0.00043276	-0.26992	-0.00013517	0.59425	0.00029759	500.787377997042	7.7576	0.32813	7.7576	7.7044	8.0325	0	720	67	0.841341816837976	0.0448375931863544	0.841341816837976	341.635455053331	0	18.206763583066						1244	38	5	NaN	NaN	NaN	0.0011738	1	4280	81.642	34.293	1	1699700		+	12936	28	10886	11170	12936	12936		
LQAETEELEEEK	12	Unmodified	_LQAETEELEEEK_			0	0	0	P15408	P15408	P15408	FOSL2	Fos-related antigen 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.343568	1446.67258	1.7323	0.0012548	-1.9888	-0.0014406	-0.25651	-0.0001858	724.343867430919	5.8953	0.15968	5.8953	5.8421	6.0017	0	459	49	1.01763759082241	0.0322363117711004	1.01763759082241	411.483512002797	0	13.0348081686621						424	19	4	NaN	NaN	NaN	3.286E-07	1	16879	115.04	101.76	1	97513			12937	713	10887	11171	12937	12937		
LQAFSAAIESCNK	13	Unmodified	_LQAFSAAIESCNK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.853383	1437.69221	2.0847	0.0015007	-1.0877	-0.00078295	0.99706	0.00071774	719.85324034059	8.9109	0.29277	8.9109	8.8133	9.106	0	471	64	1.00957851518677	0.0423072461230747	1.00957851518677	408.248959264381	0	17.1080197718866						863	34	3	NaN	NaN	NaN	4.4682E-11	1	16603	151.66	128.77	1	611660			12938	1530	10888	11172	12938	12938		
LQAGEYVSLGK	11	Unmodified	_LQAGEYVSLGK_			0	0	0	O60488;O95573	O60488;O95573	O60488	ACSL4;ACSL3	Long-chain-fatty-acid--CoA ligase 4;Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.816596	1163.61864	1.2559	0.00073197	0.39936	0.00023276	1.6553	0.00096472	582.816843209037	8.3697	0.20398	8.3697	8.2987	8.5027	0	582	43	0.934820374997243	0.0283593603705795	0.934820374997243	378.86585800043	0	11.4935378886823						442	24	3	NaN	NaN	NaN	0.045205	1	8443	50.297	36.649	1	168480			12939	260;443	10889	11173	12939	12939		
LQAILEDIQVTLFTR	15	Unmodified	_LQAILEDIQVTLFTR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.501269	1758.98799	1.7111	0.0015066	-2.4756	-0.0021798	-0.76451	-0.00067316	880.499830207354	19.889	0.070937	19.889	19.88	19.951	3.5527E-15	282	43	1.13599383354359	0.0279744112588804	1.13599383354359	458.567709669747	0	11.292457160906						141	9	4	NaN	NaN	NaN	0.00013055	1	26118	54.556	51.051	1	31973			12940	565	10890	11174	12940	12940		
LQALANEQAAAAHELEK	17	Unmodified	_LQALANEQAAAAHELEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.970864	1805.92718	2.0949	0.0018937	-0.84101	-0.00076025	1.2539	0.0011335	903.969655474508	8.352	0.062116	8.352	8.3253	8.3874	0	243	34	1.16194328902838	0.0219391257106372	1.16194328902838	468.947393027727	0	8.85438721877205						178	8	3	NaN	NaN	NaN	0.00011336	1	27380	71.935	67.629	1	45043			12941	2167	10891	11175	12941	12941		
LQALANEQAAAAHELEK	17	Unmodified	_LQALANEQAAAAHELEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.983002	1805.92718	1.2425	0.00074921	0.96424	0.00058142	2.2067	0.0013306	603.317690517028	8.352	0.1508	8.352	8.281	8.4318	0	573	34	0.940896116921038	0.0222715533643577	0.940896116921038	569.600390348841	0	13.4827695235115						334	18	4	NaN	NaN	NaN	9.3666E-07	1	27381	113.86	107.83	1	154890			12942	2167	10891	11175	12942	12942		
LQALDTGWNELHK	13	Unmodified	_LQALDTGWNELHK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.93169	1523.77324	-0.64245	-0.00032697	-1.1942	-0.00060778	-1.8367	-0.00093475	508.931109740323	10.126	0.15961	10.126	10.081	10.241	0	762	37	0.812773098473386	0.0245113207191667	0.812773098473386	492.730031537692	0	14.8595762503341						466	19	5	NaN	NaN	NaN	1.5428E-05	1	19237	101.48	84.829	1	244610			12943	1511	10892	11176	12943	12943		
LQALDTGWNELHK	13	Unmodified	_LQALDTGWNELHK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.893897	1523.77324	2.3818	0.0018171	-0.79701	-0.00060804	1.5848	0.001209	762.89336714807	10.126	0.097539	10.126	10.09	10.188	0	363	28	1.08195024817156	0.0180468052044267	1.08195024817156	437.278702182614	0	7.29375825891287						222	12	4	NaN	NaN	NaN	3.5675E-05	1	19239	94.791	71.893	1	62637			12944	1511	10892	11176	12944	12944		
LQALQSQVEFLEQSMVDK	18	Unmodified	_LQALQSQVEFLEQSMVDK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.0328	2092.05106	1.3601	0.0014241	-0.70249	-0.00073553	0.65762	0.00068855	1047.53288525403	17.708	0.07981	17.708	17.672	17.752	0	147	28	1.22562176648663	0.0178641485917501	1.22562176648663	494.131424507465	0	7.20225230379089						141	10	2	NaN	NaN	NaN	0.0033883	1	33221	28.432	27.957	1	46915			12945	2418	10893	11177	12945	12945		
LQAMHLER	8	Unmodified	_LQAMHLER_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	333.179771	996.517485	-1.4056	-0.00046831	-1.5215	-0.00050695	-2.9271	-0.00097526	333.179355309098	4.4233	0.044305	4.4233	4.3968	4.4411	0	885	19	0.728786607772777	0.012325854453324	0.728786607772777	443.909194724486	0	7.50776711085257						61	6	2	NaN	NaN	NaN	0.02144	1	4212	51.43	31.943	1	14794			12946	1581	10894	11178	12946	12946		
LQAPLSEPTLSQHTHDYPYSLVSR	24	Unmodified	_LQAPLSEPTLSQHTHDYPYSLVSR_			0	0	0	Q6NUQ4	Q6NUQ4	Q6NUQ4	TMEM214	Transmembrane protein 214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	685.598875	2738.36639	0.099338	6.8106E-05	0.93005	0.00063764	1.0294	0.00070575	685.850147326929	11.926	0.24831	11.926	11.784	12.032	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	754.232813174286	0	13.0447396932425						421	29	4	NaN	NaN	NaN	2.715E-06	1	37723	54.813	52.627	1	93307			12947	2047	10895	11179	12947	12947		
LQAQLNELQAQLSQK	15	Unmodified	_LQAQLNELQAQLSQK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.4705	1710.92645	2.0961	0.0017953	-1.6377	-0.0014027	0.45838	0.00039259	857.471010509585	12.157	0.1419	12.157	12.094	12.236	0	279	70	1.13799159301878	0.0459801174919154	1.13799159301878	459.475045343142	0	18.5649144502355						911	17	6	NaN	NaN	NaN	2.8619E-06	1	24794	105.08	86.98	1	247760			12948	1782	10896	11180	12948	12948		
LQAQQDAVNIVCHSK	15	Unmodified	_LQAQQDAVNIVCHSK_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.933228	1709.8519	2.3558	0.0020164	-1.5625	-0.0013374	0.79327	0.00067898	855.931897248123	7.1545	0.079819	7.1545	7.1102	7.19	-8.8818E-16	246	46	1.1599488233373	0.0299252192547748	1.1599488233373	468.342853060177	0	12.0826559605527						302	10	4	NaN	NaN	NaN	4.87E-09	1	24752	137.58	111	1	73736			12949	1262	10897	11181	12949	12949		
LQAQQDAVNIVCHSK	15	Unmodified	_LQAQQDAVNIVCHSK_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.957911	1709.8519	0.56678	0.00032361	0.39552	0.00022583	0.9623	0.00054943	570.958360608865	7.1457	0.16846	7.1457	7.1014	7.2698	0	678	37	0.869855008346864	0.0244161317005186	0.869855008346864	526.818640311839	0	14.7873762646806						460	20	5	NaN	NaN	NaN	8.5722E-05	1	24753	121.69	106.08	1	218630			12950	1262	10897	11181	12950	12950		
LQATLDMQSGIIHAAEEK	18	Unmodified	_LQATLDMQSGIIHAAEEK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.998765	1953.98298	1.2388	0.0012116	-3.1364	-0.0030674	-1.8976	-0.0018558	978.99741279825	11.704	0.15073	11.704	11.66	11.811	0	147	79	1.22562176648663	0.0516606913837157	1.22562176648663	494.361598858651	0	20.8376374252941						658	18	5	NaN	NaN	NaN	0.0559	1	30782	37.886	32.499	1	130560			12951	63	10898	11182	12951	12951		
LQATLDMQSGIIHAAEEK	18	Unmodified	_LQATLDMQSGIIHAAEEK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.334935	1953.98298	0.70588	0.00046047	0.65206	0.00042536	1.3579	0.00088583	652.335449667872	11.695	0.18622	11.695	11.633	11.82	0	546	58	0.959108205975751	0.0384264728149466	0.959108205975751	580.290604609264	0	23.2492236056946						501	22	3	NaN	NaN	NaN	2.0559E-05	1	30784	99.668	88.186	1	228430			12952	63	10898	11182	12952	12952		
LQAVEVVITHLAPGTK	16	Unmodified	_LQAVEVVITHLAPGTK_			0	0	0	Q9Y2V2	Q9Y2V2	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.329562	1674.96686	0.26933	0.00015065	-0.19365	-0.00010831	0.075682	4.2331E-05	559.32931187415	13.957	0.17735	13.957	13.895	14.072	0	627	37	0.90440375274676	0.0243619867259138	0.90440375274676	547.834343428214	0	14.7570517725782						466	21	4	NaN	NaN	NaN	8.9188E-05	1	23775	90.156	76.981	1	173300			12953	3354	10899	11183	12953	12953		
LQAVEVVITHLAPGTK	16	Unmodified	_LQAVEVVITHLAPGTK_			0	0	0	Q9Y2V2	Q9Y2V2	Q9Y2V2	CARHSP1	Calcium-regulated heat stable protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.490704	1674.96686	2.0642	0.0017308	0.41832	0.00035076	2.4825	0.0020815	838.490889326589	13.966	0.20395	13.966	13.895	14.099	0	222	52	1.17589687683038	0.0338779830107856	1.17589687683038	474.861561254563	0	13.6809206841509						546	24	4	NaN	NaN	NaN	0.0043381	1	23776	56.08	52.098	1	290670			12954	3354	10899	11183	12954	12954		
LQAVTDDHIR	10	Unmodified	_LQAVTDDHIR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.875405	1166.60439	-0.17883	-6.9723E-05	0.27974	0.00010907	0.10091	3.9342E-05	389.875643895112	4.1928	0.25714	4.1928	4.1573	4.4145	0	897	46	0.720567078607086	0.0308210921232054	0.720567078607086	438.031736700863	0	18.7360995396053						511	30	4	NaN	NaN	NaN	9.9426E-05	1	8517	110.22	63.383	1	355600			12955	894	10900	11184	12955	12955		
LQAYHTQTTPLIEYYR	16	Unmodified	_LQAYHTQTTPLIEYYR_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.00999	1996.00543	2.0339	0.0020319	-0.36086	-0.0003605	1.6731	0.0016714	999.511684484927	10.179	0.14188	10.179	10.135	10.277	0	195	58	1.19381749893585	0.0378272416216301	1.19381749893585	481.4616506619	0	15.2555698064157						428	17	3	NaN	NaN	NaN	0.00023127	1	31565	61.067	54.211	1	88782			12956	1257	10901	11185	12956	12956		
LQAYHTQTTPLIEYYR	16	Unmodified	_LQAYHTQTTPLIEYYR_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.342419	1996.00543	1.1124	0.00074123	0.82299	0.00054839	1.9354	0.0012896	666.677357043561	10.188	0.2128	10.188	10.099	10.312	0	615	109	0.912521036363781	0.0729544801590846	0.912521036363781	552.022001804532	0	44.1332052338266						1827	25	6	NaN	NaN	NaN	3.9503E-06	1	31566	139.61	131.61	1	780750			12957	1257	10901	11185	12957	12957		
LQDAEIAR	8	Unmodified	_LQDAEIAR_			0	0	0	P06703	P06703	P06703	S100A6	Protein S100-A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.248349	914.482145	1.1409	0.0005228	1.906	0.00087344	3.0469	0.0013962	458.249231142264	3.776	0.79804	3.776	3.6342	4.4322	0	744	97	0.82502364452135	0.065345411009889	0.82502364452135	335.43208950199	0	26.5676600906754						1511	91	4	NaN	NaN	NaN	2.1368E-05	1	2592	147.16	98.098	1	1497700			12958	542	10902	11186	12958	12958		
LQDAFSSIGQSCHLDLPQIAVVGGQSAGK	29	Unmodified	_LQDAFSSIGQSCHLDLPQIAVVGGQSAGK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	995.169583	2982.48692	0.79655	0.00079271	1.622	0.0016141	2.4185	0.0024068	995.504972758413	15.97	0.097542	15.97	15.899	15.996	0	384	19	1.06790610341098	0.0120436486184876	1.06790610341098	644.544220273187	0	7.26905116775026						166	12	4	NaN	NaN	NaN	2.1175E-06	1	38192	33.024	30.528	1	29388			12959	1167	10903	11187	12959	12959		
LQDAINILK	9	Unmodified	_LQDAINILK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.310949	1026.60735	0.72926	0.00037507	-1.0997	-0.00056561	-0.37048	-0.00019054	514.310591525716	10.72	0.21284	10.72	10.658	10.871	0	669	46	0.875957769340875	0.0305053430673474	0.875957769340875	355.564360805054	0	12.3825750378833						619	25	4	NaN	NaN	NaN	2.0549E-06	1	4909	163.2	113.88	1	453200			12960	1055	10904	11188	12960	12960		
LQDAYYIFQEMADK	14	Unmodified	_LQDAYYIFQEMADK_			0	0	0	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.905813	1733.79707	1.9539	0.0016958	-0.39893	-0.00034624	1.555	0.0013496	868.407081258757	16.502	0.17732	16.502	16.457	16.635	0	336	34	1.09998710857178	0.0220298733175506	1.09998710857178	444.083282693821	0	8.89383010396301						505	21	5	NaN	NaN	NaN	1.0448E-05	1	25432	112.95	72.09	1	182970			12961	106	10905	11189	12961	12961		
LQDEANYHLYGSR	13	Unmodified	_LQDEANYHLYGSR_			0	0	0	Q13546	Q13546	Q13546	RIPK1	Receptor-interacting serine/threonine-protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.370786	1564.72702	2.506	0.0019631	-1.1875	-0.00093022	1.3185	0.0010329	783.369399216223	6.0106	0.062071	6.0106	5.984	6.0461	0	420	22	1.04379886199097	0.0140751738735123	1.04379886199097	421.760104833834	0	5.68725165797156						69	8	2	NaN	NaN	NaN	0.0077246	1	20481	20.611	17.733	1	18206			12962	1681	10906	11190	12962	12962		
LQDEIQNMK	9	Unmodified	_LQDEIQNMK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.779156	1117.54376	1.5153	0.00084824	0.15387	8.6134E-05	1.6692	0.00093437	559.780232511236	5.4962	0.52318	5.4962	5.3898	5.913	0	621	61	0.908462957275599	0.0405920646036421	0.908462957275599	368.361433752136	0	16.4591753539389						1231	60	5	NaN	NaN	NaN	0.0014838	1	7196	91.783	62.681	1	1598600			12963	588	10907	11191	12963	12963		
LQDEIQNMK	9	Unmodified	_LQDEIQNMK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.779156	1117.54376	1.7144	0.00095968	5.5743	0.0031204	7.2887	0.00408	559.78318268361	5.6825	0.37244	5.6825	5.5583	5.9307	0	645	85	0.892219381832517	0.0568604487346249	0.892219381832517	361.775002863399	0	23.055640151566						542	43	3	NaN	NaN	NaN	0.02502	1	7199	49.96	0.80056	1	414590			12964	588	10907	11191	12964	12964		
LQDEIQNMK	9	Oxidation (M)	_LQDEIQNM(Oxidation (M))K_	LQDEIQNM(1)K	LQDEIQNM(70)K	0	1	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.776613	1133.53867	2.2234	0.0012624	-3.0759	-0.0017464	-0.85252	-0.00048404	567.775076394346	3.2528	0.33705	3.2528	3.173	3.51	0	624	76	0.906433495720521	0.0507647276099089	0.906433495720521	367.47535348515	0	20.5804246104123						794	39	2	NaN	NaN	NaN	0.015732	1	7624	69.716	41.979	1	555760			12965	588	10907	11192	12965	12965	157	
LQDGSAYTIDWSR	13	Unmodified	_LQDGSAYTIDWSR_			0	0	0	Q96PV6	Q96PV6	Q96PV6	LENG8	Leukocyte receptor cluster member 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.359887	1510.70522	1.9953	0.0015092	2.1569	0.0016314	4.1522	0.0031406	756.361757858148	10.862	0.13301	10.862	10.826	10.959	0	420	37	1.04379886199097	0.0241305373401517	1.04379886199097	421.89235864736	0	9.75330562676248						239	16	3	NaN	NaN	NaN	0.063225	1	18826	23.931	16.374	1	52278			12966	2599	10908	11193	12966	12966		
LQDIITALEER	11	Unmodified	_LQDIITALEER_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.858992	1299.70343	0.08436	5.4907E-05	-2.0125	-0.0013098	-1.9281	-0.0012549	650.857076165203	14.79	0.20393	14.79	14.71	14.914	0	516	67	0.979317271586824	0.0444476643821431	0.979317271586824	396.412466932523	0	17.9917262753515						374	24	3	NaN	NaN	NaN	5.0759E-05	1	12347	94.791	65.036	1	76157			12967	1758	10909	11194	12967	12967		
LQDLAGGIFPEDEIPEK	17	Unmodified	_LQDLAGGIFPEDEIPEK_			0	0	0	P56182	P56182	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.975281	1869.93601	0.87017	0.00081446	-1.944	-0.0018195	-1.0738	-0.0010051	936.475213164046	14.834	0.15962	14.834	14.764	14.923	0	201	91	1.18983705239708	0.0598134788155047	1.18983705239708	480.079723573615	0	24.1337570702419						695	19	2	NaN	NaN	NaN	0.00097954	1	28933	52.662	46.457	1	226480			12968	1283	10910	11195	12968	12968		
LQDLDTDYGSGYPNDPK	17	Unmodified	_LQDLDTDYGSGYPNDPK_			0	0	0	O75792	O75792	O75792	RNASEH2A	Ribonuclease H2 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.426152	1896.83775	2.5377	0.0024094	-1.5793	-0.0014995	0.95841	0.00090994	949.424547957641	8.5027	0.097538	8.5027	8.4584	8.5559	0	300	67	1.12400150285141	0.0439658526827531	1.12400150285141	453.468789402145	0	17.7376470943355						509	12	3	NaN	NaN	NaN	8.1728E-05	1	29527	84.58	81.865	1	97302			12969	358	10911	11196	12969	12969		
LQDLELK	7	Unmodified	_LQDLELK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.750193	857.485833	-0.85184	-0.00036608	3.09	0.0013279	2.2382	0.00096186	429.750433902967	6.9151	0.13301	6.9151	6.8707	7.0037	0	759	40	0.814815566123307	0.0265520848430444	0.814815566123307	331.607378949438	0	10.8059634922495						309	16	3	NaN	NaN	NaN	0.016923	1	1676	85.813	0	1	88887			12970	1498	10912	11197	12970	12970		
LQDLSSCITQGK	12	Unmodified	_LQDLSSCITQGK_			0	0	0	P29590	P29590	P29590	PML	Protein PML	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.340109	1348.66566	1.2143	0.00082005	0.1992	0.00013453	1.4135	0.00095458	675.340318335487	7.5713	0.27486	7.5713	7.3674	7.6422	0	507	52	0.985374541851584	0.0342865984735948	0.985374541851584	398.712015715572	0	13.8733833774006						402	32	3	NaN	NaN	NaN	0.0052796	1	13854	63.212	37.355	1	117620			12971	889	10913	11198	12971	12971		
LQDMLDGFIK	10	Unmodified	_LQDMLDGFIK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.307549	1178.60055	0.36912	0.00021789	-1.1701	-0.0006907	-0.80095	-0.00047281	590.307087905195	14.941	0.19509	14.941	14.879	15.074	0	618	64	0.910492137470517	0.0425891846229369	0.910492137470517	368.951116167414	0	17.2580591930718						632	23	5	NaN	NaN	NaN	0.00040087	1	8845	88.181	48.857	1	257820			12972	1261	10914	11199	12972	12972		
LQDNVREDLYEAADK	15	Unmodified	_LQDNVREDLYEAADK_			0	0	1	Q9H7Z7	Q9H7Z7	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.623362	1777.84826	-0.41881	-0.00024862	0.81079	0.0004813	0.39198	0.00023269	593.624039912432	8.2544	0.079845	8.2544	8.2277	8.3076	0	726	25	0.837263974740672	0.0163136366798808	0.837263974740672	506.924420106684	0	9.87714874074351						127	10	3	NaN	NaN	NaN	0.0050826	1	26614	42.446	29.864	1	27168			12973	2919	10915	11200	12973	12973		
LQDQAAETIEALHAAGLK	18	Unmodified	_LQDQAAETIEALHAAGLK_			0	0	0	Q8NB49	Q8NB49	Q8NB49	ATP11C	Phospholipid-transporting ATPase IG	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.002173	1877.98469	1.7725	0.0011114	-1.4192	-0.00088987	0.35326	0.00022149	627.33550134419	12.91	0.12416	12.91	12.848	12.972	0	561	37	0.948993180460448	0.0242743844973287	0.948993180460448	574.334372998989	0	14.6909521451411						191	15	4	NaN	NaN	NaN	0.0010714	1	29106	40.83	32.865	1	39521			12974	2284	10916	11201	12974	12974		
LQDREWLTELFQQSK	15	Unmodified	_LQDREWLTELFQQSK_			0	0	1	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.998652	1919.97413	-1.2839	-0.00082295	-1.0384	-0.00066561	-2.3223	-0.0014886	640.998193052664	15.677	0.088652	15.677	15.642	15.73	0	708	22	0.849494101904619	0.0142635264886745	0.849494101904619	514.034768368068	0	8.63095872976498						185	11	4	NaN	NaN	NaN	0.00015883	1	30066	65.173	50.198	1	44523			12975	1457	10917	11202	12975	12975		
LQDSQLWK	8	Unmodified	_LQDSQLWK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.271824	1016.5291	0.2752	0.00014015	1.2651	0.00064427	1.5403	0.00078442	509.272712936677	7.4028	0.20393	7.4028	7.2964	7.5003	0	696	31	0.857641857947968	0.0203693921717962	0.857641857947968	348.175306685593	0	8.26932512760419						277	22	2	NaN	NaN	NaN	0.043563	1	4663	30.562	16.914	1	111820			12976	2422	10918	11203	12976	12976		
LQDSVLER	8	Unmodified	_LQDSVLER_			0	0	0	Q9H4A5	Q9H4A5	Q9H4A5	GOLPH3L	Golgi phosphoprotein 3-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.261456	958.50836	-0.33669	-0.0001617	-5.6179	-0.0026981	-5.9546	-0.0028598	480.258696263183	5.443	0.23939	5.443	5.3366	5.576	0	756	79	0.816857749704129	0.0530340992249837	0.816857749704129	331.886273975692	0	21.5475578113965						619	28	2	NaN	NaN	NaN	0.0391	1	3406	42.075	17.224	1	219260			12977	2893	10919	11204	12977	12977		
LQDTSSYAK	9	Unmodified	_LQDTSSYAK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.750921	1011.48729	1.1007	0.00055778	0.56694	0.0002873	1.6676	0.00084508	506.751299016082	2.6941	0.18622	2.6941	2.6587	2.8449	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	344.063265466707	0	6.6186581652068						184	22	3	NaN	NaN	NaN	0.0021494	1	4542	49.96	34.462	1	35739			12978	718	10920	11205	12978	12978		
LQDTYNLDTDTISK	14	Unmodified	_LQDTYNLDTDTISK_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.8965	1625.77845	2.3961	0.0019501	-0.075245	-6.1242E-05	2.3208	0.0018889	813.895721042215	9.0706	0.2483	9.0706	9.0085	9.2568	0	372	52	1.07593298845566	0.034116624349938	1.07593298845566	434.601066682837	0	13.780710781424						551	29	5	NaN	NaN	NaN	8.0126E-12	1	22352	193.34	154.04	1	236240			12979	681	10921	11206	12979	12979		
LQEALDAEMLEDEAGGGGAGPGGACK	26	Unmodified	_LQEALDAEMLEDEAGGGGAGPGGACK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1252.05741	2502.10027	0.67155	0.00084082	1.474	0.0018455	2.1456	0.0026864	1252.56075735537	12.644	0.035468	12.644	12.635	12.671	0	60	22	1.28308947459206	0.0138487246935988	1.28308947459206	516.741141727217	0	5.57732406924413						66	5	3	NaN	NaN	NaN	0.04333	1	36835	12.066	11.761	1	9789.8			12980	1919	10922	11207	12980	12980		
LQEALDAEMLEDEAGGGGAGPGGACK	26	Unmodified	_LQEALDAEMLEDEAGGGGAGPGGACK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	835.040699	2502.10027	1.7495	0.0014609	1.8042	0.0015066	3.5537	0.0029675	835.3779718448	12.653	0.053205	12.653	12.635	12.689	0	375	25	1.07392668217569	0.0160493451484018	1.07392668217569	648.755455754297	0	9.69535481250477						97	7	3	NaN	NaN	NaN	0.014161	1	36836	41.188	41.135	1	18381			12981	1919	10922	11207	12981	12981		
LQEALEDER	9	Unmodified	_LQEALEDER_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.772385	1101.53022	1.6721	0.00092259	2.0537	0.0011332	3.7258	0.0020558	551.773120802026	4.5031	0.24828	4.5031	4.4411	4.6893	0	639	34	0.896281965493857	0.0223488632159498	0.896281965493857	363.486666715073	0	9.06356939890065						238	29	2	NaN	NaN	NaN	0.0011128	1	6754	63.397	35.301	1	102310			12982	3209	10923	11208	12982	12982		
LQEALGMHESK	11	Unmodified	_LQEALGMHESK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.876417	1241.60742	-0.50877	-0.00021108	0.97557	0.00040474	0.4668	0.00019367	414.876732115371	4.0243	0.088672	4.0243	3.9977	4.0864	0	840	19	0.759569036796863	0.0123001033069321	0.759569036796863	461.41543326281	0	7.47194424943791						122	11	3	NaN	NaN	NaN	0.047448	1	10668	22.004	18.659	1	24772			12983	2114	10924	11209	12983	12983		
LQEALMHYK	9	Unmodified	_LQEALMHYK_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.794609	1131.57467	1.4856	0.00084203	2.4747	0.0014027	3.9603	0.0022447	566.796287944333	5.5494	0.079809	5.5494	5.5228	5.6026	0	579	22	0.936845902828289	0.0141786956334647	0.936845902828289	379.812681130039	0	5.74827555654059						62	10	2	NaN	NaN	NaN	0.012201	1	7578	60.589	25.808	1	12922			12984	161	10925	11210	12984	12984		
LQEDGLLSNVSHVIVDEVHER	21	Unmodified	_LQEDGLLSNVSHVIVDEVHER_			0	0	0	Q7Z478	Q7Z478	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	597.809302	2387.2081	-0.23032	-0.00013769	-1.211	-0.00072393	-1.4413	-0.00086162	598.059348642881	15.775	0.097574	15.775	15.739	15.837	0	645	22	0.892219381832517	0.0142220026329837	0.892219381832517	718.838162980102	0	11.4583010129129						229	12	4	NaN	NaN	NaN	0.028335	1	36281	21.21	19.586	1	68193			12985	2136	10926	11211	12985	12985		
LQEEHSLQDVIFK	13	Unmodified	_LQEEHSLQDVIFK_			0	0	0	Q96RQ1	Q96RQ1	Q96RQ1	ERGIC2	Endoplasmic reticulum-Golgi intermediate compartment protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.278867	1584.81477	-1.4684	-0.00077717	-0.26995	-0.00014288	-1.7383	-0.00092005	529.278751746326	10.871	0.097551	10.871	10.826	10.924	0	798	31	0.788241307691771	0.0204573895443732	0.788241307691771	477.692520803329	0	12.3976527050121						271	12	4	NaN	NaN	NaN	8.1614E-05	1	21107	84.309	62.306	1	84238			12986	2613	10927	11212	12986	12986		
LQEELSQAESTIDELK	16	Unmodified	_LQEELSQAESTIDELK_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.959828	1831.9051	2.1837	0.0020023	-2.008	-0.0018412	0.17568	0.00016109	916.958891760084	13.939	0.11527	13.939	13.903	14.019	0	276	52	1.13998907770044	0.0339525806240335	1.13998907770044	460.03719796293	0	13.7014032497557						497	14	4	NaN	NaN	NaN	4.7524E-08	1	28024	128.68	105.78	1	126660			12987	1736	10928	11213	12987	12987		
LQEEMLQR	8	Unmodified	_LQEEMLQR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.768591	1045.52263	1.8239	0.00095531	0.47896	0.00025086	2.3029	0.0012062	523.769498436231	5.5494	0.28381	5.5494	5.4962	5.78	0	639	82	0.896281965493857	0.0548791784158134	0.896281965493857	363.727154935922	0	22.2709461964974						1333	33	5	NaN	NaN	NaN	0.00016773	1	5366	117.39	86.826	1	1165200			12988	588	10929	11214	12988	12988		
LQEEMLQREEAENTLQSFR	19	Unmodified	_LQEEMLQREEAENTLQSFR_			0	0	1	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	784.381384	2350.12232	1.352	0.0010605	-0.17288	-0.00013561	1.1791	0.00092487	784.715757585759	11.483	0.19523	11.483	11.385	11.58	0	546	124	0.959108205975751	0.082782859075509	0.959108205975751	579.600885205829	0	50.0266999084016						986	23	3	NaN	NaN	NaN	2.1787E-27	1	36042	213.91	186.53	1	420350			12989	588	10930	11215	12989	12989		
LQEEQENAPEFVK	13	Unmodified	_LQEEQENAPEFVK_			0	0	0	Q9H098	Q9H098	Q9H098	FAM107B	Protein FAM107B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.880652	1559.74675	2.0234	0.00158	-0.85346	-0.00066645	1.1699	0.00091359	780.880172085745	7.1545	0.088653	7.1545	7.1191	7.2077	0	411	40	1.04982941439551	0.0261251880875029	1.04982941439551	424.208705092735	0	10.5565076163207						289	11	4	NaN	NaN	NaN	0.00023976	1	20335	61.042	47.867	1	73912			12990	2840	10931	11216	12990	12990		
LQEESDLELAK	11	Unmodified	_LQEESDLELAK_			0	0	0	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.827357	1273.64016	2.3017	0.0014681	0.82493	0.00052616	3.1266	0.0019942	637.828084574677	7.3231	0.21281	7.3231	7.2787	7.4915	0	483	55	1.00151498427745	0.0362959330386661	1.00151498427745	405.484982422637	0	14.6951927841745						567	25	3	NaN	NaN	NaN	1.1944E-07	1	11596	155.57	110.08	1	468700			12991	363	10932	11217	12991	12991		
LQELEANPPSDVYLSSR	17	Unmodified	_LQELEANPPSDVYLSSR_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.481262	1916.94797	2.3473	0.0022522	-3.4671	-0.0033267	-1.1198	-0.0010745	959.476869573611	11.066	0.19509	11.066	10.977	11.172	0	249	49	1.15795408347545	0.031926818196472	1.15795408347545	467.131084248523	0	12.8796205424321						333	23	2	NaN	NaN	NaN	0.051527	1	29994	24.164	20.181	1	95816			12992	257	10933	11218	12992	12992		
LQELESCSGLGSTSDDTDVR	20	Unmodified	_LQELESCSGLGSTSDDTDVR_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.98424	2167.95392	1.3289	0.0014418	-0.2585	-0.00028046	1.0704	0.0011614	1085.48601955953	8.5914	0.062111	8.5914	8.5559	8.618	0	105	58	1.25339330680955	0.0376718785642967	1.25339330680955	505.21133654631	0	15.1845873248872						257	8	3	NaN	NaN	NaN	8.5391E-29	1	34277	195.66	191.58	1	48789			12993	1784	10934	11219	12993	12993		
LQELPDAVPHGEMPR	15	Unmodified	_LQELPDAVPHGEMPR_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.619006	1687.83519	1.2785	0.0007206	0.041988	2.3665E-05	1.3205	0.00074427	563.619024286377	9.0883	0.17734	9.0883	8.9996	9.177	0	594	58	0.926715457081489	0.0385170505525262	0.926715457081489	561.314377526745	0	23.3298949422359						855	21	4	NaN	NaN	NaN	0.0021596	1	24143	46.068	44.358	1	268920			12994	951	10935	11220	12994	12994		
LQELSAEER	9	Unmodified	_LQELSAEER_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.774928	1073.5353	1.9799	0.0010648	5.5836	0.0030027	7.5635	0.0040675	537.777922412954	4.4233	0.25714	4.4233	4.3435	4.6007	0	654	43	0.886123392477847	0.0284538779010195	0.886123392477847	359.482611141796	0	11.5431715399885						520	30	4	NaN	NaN	NaN	0.0036279	1	6039	81.642	40.618	1	246730			12995	3044	10936	11221	12995	12995		
LQELTDLLQEK	11	Unmodified	_LQELTDLLQEK_			0	0	0	Q5VTR2	Q5VTR2	Q5VTR2	RNF20	E3 ubiquitin-protein ligase BRE1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.36665	1328.71875	1.2726	0.00084673	-0.44693	-0.00029737	0.82564	0.00054935	665.367338330374	13.903	0.12414	13.903	13.859	13.983	0	492	49	0.995464410099171	0.0322853553889811	0.995464410099171	402.856015217923	0	13.0656098700744						407	15	4	NaN	NaN	NaN	0.0029893	1	13257	44.57	27.918	1	104320			12996	2009	10937	11222	12996	12996		
LQENLQQLQHSTNQLAK	17	Unmodified	_LQENLQQLQHSTNQLAK_			0	0	0	Q86Y82	Q86Y82	Q86Y82	STX12	Syntaxin-12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	665.020227	1992.03885	1.1145	0.00074115	-0.40479	-0.0002692	0.70968	0.00047195	665.354235153365	8.2632	0.079877	8.2632	8.2366	8.3164	0	561	22	0.948993180460448	0.0141669189625594	0.948993180460448	574.093413425666	0	8.57027746078677						162	10	4	NaN	NaN	NaN	0.0017602	1	31497	50.314	32.216	1	39935			12997	2194	10938	11223	12997	12997		
LQEQEVFFK	9	Unmodified	_LQEQEVFFK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.305864	1166.59717	1.326	0.0007748	-0.085946	-5.0219E-05	1.2401	0.00072459	584.305920079824	9.7268	0.1596	9.7268	9.6736	9.8332	0	588	37	0.93076847747433	0.0243147574808095	0.93076847747433	377.212416759121	0	9.8540385221641						288	19	3	NaN	NaN	NaN	0.0011101	1	8516	74.486	36.164	1	87224			12998	2866	10939	11224	12998	12998		
LQESGQVTISELCK	14	Unmodified	_LQESGQVTISELCK_			0	0	0	O94874	O94874	O94874	UFL1	E3 UFM1-protein ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.403437	1590.79232	1.7381	0.0013842	0.87488	0.00069676	2.613	0.002081	796.404177742246	9.1238	0.10643	9.1238	9.0794	9.1858	0	387	28	1.06589869032374	0.0180667195029678	1.06589869032374	430.627905011472	0	7.29903661635052						187	13	3	NaN	NaN	NaN	1.0959E-07	1	21297	91.939	84.799	1	45079			12999	391	10940	11225	12999	12999		
LQESIEYEDLGK	12	Unmodified	_LQESIEYEDLGK_			0	0	0	P32780	P32780	P32780	GTF2H1	General transcription factor IIH subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.351197	1422.68784	1.6082	0.0011456	0.53503	0.00038113	2.1432	0.0015267	712.351363767339	9.0794	0.13303	9.0794	9.0351	9.1681	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.734566633117	0	8.14692864221365						219	16	3	NaN	NaN	NaN	0.0066565	1	16169	54.27	44.756	1	49355			13000	940	10941	11226	13000	13000		
LQESPEDMPAGQTPHTVILFAHNDLVDK	28	Unmodified	_LQESPEDMPAGQTPHTVILFAHNDLVDK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	776.385476	3101.5128	1.4217	0.0011038	-2.1316	-0.0016549	-0.7099	-0.00055116	776.885433780064	13.079	0.26603	13.079	12.963	13.23	0	435	46	1.03374239103424	0.0301735847803846	1.03374239103424	831.749761440199	0	24.2776848086608						712	31	6	NaN	NaN	NaN	1.5772E-06	1	38364	87.232	85.86	1	252550			13001	950	10942	11227	13001	13001		
LQETEMMDPELDYTLMR	17	Unmodified	_LQETEMMDPELDYTLMR_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.97578	2113.93701	1.2182	0.0012888	1.1585	0.0012256	2.3766	0.0025144	1058.47909666404	15.845	0.1685	15.845	15.748	15.916	0	171	40	1.20972836110953	0.0258391918744247	1.20972836110953	487.690408411098	0	10.4168228532669						454	20	5	NaN	NaN	NaN	2.6178E-10	1	33519	102.26	96.644	1	96163			13002	2441	10943	11228	13002	13002		
LQETSSQSYVEEQK	14	Unmodified	_LQETSSQSYVEEQK_			0	0	0	Q8N9T8	Q8N9T8	Q8N9T8	KRI1	Protein KRI1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.391581	1654.76861	3.5391	0.0029317	-2.6329	-0.0021811	0.90614	0.00075064	828.388764426655	4.512	0.12413	4.512	4.4765	4.6007	0	414	28	1.04781950764076	0.0180891625147663	1.04781950764076	423.182559546339	0	7.30566479935487						210	15	3	NaN	NaN	NaN	3.2865E-08	1	23183	132.93	122.14	1	48293			13003	2279	10944	11229	13003	13003		
LQEVECEEQR	10	Unmodified	_LQEVECEEQR_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.298441	1318.58233	1.9185	0.0012668	-0.99644	-0.00065795	0.92205	0.00060883	660.297769695367	3.4035	0.15085	3.4035	3.3592	3.51	0	570	40	0.942920803299286	0.0263245737571987	0.942920803299286	381.6222569049	0	10.6541749997778						260	18	2	NaN	NaN	NaN	0.0001166	1	12919	83.358	58.104	1	74646			13004	1689	10945	11230	13004	13004		
LQEVFGHAIK	10	Unmodified	_LQEVFGHAIK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.321848	1140.62914	1.3805	0.0007887	0.988	0.00056447	2.3685	0.0013532	571.322227548927	7.0037	0.16855	7.0037	6.9594	7.128	0	558	37	0.951016745717027	0.0242811063417099	0.951016745717027	385.520938182746	0	9.84301794803127						380	20	4	NaN	NaN	NaN	0.00048283	1	7816	92.732	47.965	1	172700			13005	1250	10946	11231	13005	13005		
LQEVIETLLSLEK	13	Unmodified	_LQEVIETLLSLEK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.937439	1513.86033	1.0822	0.00082022	0.28161	0.00021344	1.3638	0.0010337	757.937789755	19.02	0.133	19.02	18.976	19.109	0	408	70	1.0518390438467	0.0462215064140965	1.0518390438467	425.134077123424	0	18.6818863471237						652	16	5	NaN	NaN	NaN	7.0991E-08	1	18944	130.99	66.927	1	299730			13006	64	10947	11232	13006	13006		
LQEVPHEGPMCDLLWSDPDDR	21	Unmodified	_LQEVPHEGPMCDLLWSDPDDR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.042263	2508.10496	1.4358	0.0012018	-0.66129	-0.00055353	0.77447	0.00064826	837.376160610472	14.099	0.16849	14.099	14.028	14.196	0	546	106	0.959108205975751	0.0708346946250306	0.959108205975751	579.386351890097	0	42.7904328733094						1631	20	6	NaN	NaN	NaN	6.1338E-12	1	36867	129.82	126.18	1	543840			13007	1439	10948	11233	13007	13007		
LQEYNVGGK	9	Unmodified	_LQEYNVGGK_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.261456	1006.50836	0.89604	0.00045184	-3.0415	-0.0015337	-2.1455	-0.0010819	504.259600582766	3.98	0.1064	3.98	3.9356	4.042	0	729	28	0.835224628594324	0.0183541170899648	0.835224628594324	339.119731687223	0	7.45217879096799						190	13	3	NaN	NaN	NaN	0.00080368	1	4424	72.492	18.813	1	60783			13008	1081	10949	11234	13008	13008		
LQFEDFIDRVEYLGSK	16	Unmodified	_LQFEDFIDRVEYLGSK_			0	0	1	Q9BVW5	Q9BVW5	Q9BVW5	TIPIN	TIMELESS-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.666791	1957.97854	-1.5166	-0.00099138	0.60086	0.00039276	-0.91578	-0.00059861	654.001417986202	18.248	0.062059	18.248	18.213	18.275	0	702	19	0.853568545818287	0.0122216343597983	0.853568545818287	516.428368904189	0	7.39436654348992						111	8	3	NaN	NaN	NaN	0.014943	1	30861	24.922	20.367	1	20003			13009	2771	10950	11235	13009	13009		
LQFHDVAGDIFHQQCK	16	Unmodified	_LQFHDVAGDIFHQQCK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	486.486168	1941.91557	0.44766	0.00021778	0.11891	5.785E-05	0.56658	0.00027563	486.736965325676	11.154	0.28381	11.154	11.101	11.385	0	705	115	0.851531465363931	0.0773823162187467	0.851531465363931	686.965279756652	0	62.4274811579744						1259	33	7	NaN	NaN	NaN	0.0016431	1	30546	108.24	99.088	1	1363800			13010	653	10951	11236	13010	13010		
LQFHDVAGDIFHQQCK	16	Unmodified	_LQFHDVAGDIFHQQCK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.312465	1941.91557	1.4107	0.00091457	0.44987	0.00029166	1.8606	0.0012062	648.31309205217	11.154	0.19506	11.154	11.083	11.279	0	549	37	0.957085760909907	0.0242743844973287	0.957085760909907	579.092313836995	0	14.6874084430665						580	23	6	NaN	NaN	NaN	9.1325E-18	1	30547	200.9	183.91	1	285540			13011	653	10951	11236	13011	13011		
LQFIADHCPTLR	12	Unmodified	_LQFIADHCPTLR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.922249	1469.74492	-0.80766	-0.0003965	-5.8587	-0.0028761	-6.6663	-0.0032726	491.919422427881	9.2125	0.16848	9.2125	9.1238	9.2923	0	753	58	0.81889964927511	0.0388177002562179	0.81889964927511	496.60821004982	0	23.5403552310163						509	20	4	NaN	NaN	NaN	0.032252	1	17574	26.465	14.508	1	160020			13012	1626	10952	11237	13012	13012		
LQFIFTNIDPK	11	Unmodified	_LQFIFTNIDPK_			0	0	0	Q9HBM1	Q9HBM1	Q9HBM1	SPC25	Kinetochore protein Spc25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.368995	1334.72344	0.74807	0.00049999	0.33254	0.00022226	1.0806	0.00072225	668.369549851785	15.748	0.11528	15.748	15.695	15.81	0	465	31	1.01360860968299	0.0201504747888646	1.01360860968299	410.179820517556	0	8.15434878244082						266	14	3	NaN	NaN	NaN	0.0014241	1	13441	92.428	86.562	1	64380			13013	2954	10953	11238	13013	13013		
LQFLFELPSR	10	Unmodified	_LQFLFELPSR_			0	0	0	Q9UID3	Q9UID3	Q9UID3	VPS51	Vacuolar protein sorting-associated protein 51 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.350606	1248.68666	-0.039608	-2.4769E-05	-0.23719	-0.00014833	-0.2768	-0.0001731	625.350763843693	17.371	0.079818	17.371	17.335	17.415	0	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.203751733331	0	7.38024642538625						170	10	3	NaN	NaN	NaN	0.0014208	1	10889	37.591	31.725	1	37807			13014	3237	10954	11239	13014	13014		
LQGDANNLHGFEVDSR	16	Unmodified	_LQGDANNLHGFEVDSR_			0	0	0	P52434	P52434	P52434	POLR2H	DNA-directed RNA polymerases I, II, and III subunit RPABC3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.421539	1770.82852	2.7601	0.0024466	-4.0565	-0.0035957	-1.2963	-0.0011491	886.419293146452	7.5092	0.11526	7.5092	7.4649	7.5801	0	351	49	1.08996939197032	0.0320677454165734	1.08996939197032	439.965977136978	0	12.9441404967148						379	14	4	NaN	NaN	NaN	0.00024125	1	26436	72.031	63.657	1	87968			13015	1211	10955	11240	13015	13015		
LQGEFQLR	8	Unmodified	_LQGEFQLR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.771991	989.529429	0.66051	0.00032746	-1.7404	-0.00086282	-1.0799	-0.00053536	495.771381449306	7.7664	0.31043	7.7664	7.6688	7.9793	0	708	61	0.849494101904619	0.0407444585972324	0.849494101904619	344.993249762762	0	16.5469814914169						586	36	3	NaN	NaN	NaN	0.005675	1	4047	89.123	50.801	1	191480			13016	1737	10956	11241	13016	13016		
LQGEVVAFDYQSK	13	Unmodified	_LQGEVVAFDYQSK_			0	0	0	Q3MHD2	Q3MHD2	Q3MHD2	LSM12	Protein LSM12 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.375006	1482.73546	1.9799	0.0014698	0.40038	0.00029723	2.3802	0.001767	742.375363662198	10.099	0.28376	10.099	9.975	10.259	1.7764E-15	426	55	1.03977710643793	0.0362158044532401	1.03977710643793	420.338781389935	0	14.6405484566608						729	33	4	NaN	NaN	NaN	1.5253E-05	1	17992	114.93	101.14	1	230830			13017	1933	10957	11242	13017	13017		
LQGQLEQGDDTAAER	15	Unmodified	_LQGQLEQGDDTAAER_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.886997	1629.75944	3.2645	0.0026635	-3.8008	-0.003101	-0.53628	-0.00043754	815.88386611259	4.4499	0.17732	4.4499	4.4233	4.6007	0	396	40	1.05987478976334	0.0261143777195971	1.05987478976334	428.105864756503	0	10.5481499930028						385	21	4	NaN	NaN	NaN	1.2648E-08	1	22460	115.35	91.511	1	116140			13018	2308	10958	11243	13018	13018		
LQGSGVSLASK	11	Unmodified	_LQGSGVSLASK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.795663	1045.57677	1.3635	0.0007142	-2.6821	-0.0014049	-1.3186	-0.00069067	523.794031204204	4.5386	0.15959	4.5386	4.4765	4.6361	0	681	34	0.867820189810857	0.0223798999073166	0.867820189810857	352.176637849744	0	9.08215549408953						216	19	3	NaN	NaN	NaN	0.0062501	1	5378	54.584	26.879	1	92282			13019	1584	10959	11244	13019	13019		
LQGVGALGQAASDNSGPEDAK	21	Unmodified	_LQGVGALGQAASDNSGPEDAK_			0	0	0	Q5JPE7;P69849	Q5JPE7	Q5JPE7	NOMO2;NOMO3	Nodal modulator 2;Nodal modulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.982157	1983.94976	2.5368	0.002519	-3.197	-0.0031745	-0.66013	-0.0006555	993.481217467496	8.1656	0.079797	8.1656	8.139	8.2188	0	261	46	1.14997238118939	0.029933448623392	1.14997238118939	463.798568559353	0	12.0725426546464						249	10	3	NaN	NaN	NaN	9.7865E-06	1	31352	65.421	62.336	1	60813			13020	1452	10960	11245	13020	13020		
LQHAAELIK	9	Unmodified	_LQHAAELIK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	341.537953	1021.59203	-0.87573	-0.00029909	0.21941	7.4937E-05	-0.65631	-0.00022416	341.537905536101	4.0864	0.15962	4.0864	4.0509	4.2105	0	861	25	0.745211914437924	0.0164161478331188	0.745211914437924	453.762513625009	0	9.99585803779615						228	19	3	NaN	NaN	NaN	0.060757	1	4780	36.211	20.712	1	68754			13021	2370	10961	11246	13021	13021		
LQHAAELIK	9	Unmodified	_LQHAAELIK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.803291	1021.59203	1.685	0.00086239	0.75604	0.00038694	2.441	0.0012493	511.803647862591	4.0864	0.1951	4.0864	4.0509	4.246	0	651	40	0.888155670855968	0.026423290319909	0.888155670855968	360.539077152897	0	10.7263051060651						306	23	3	NaN	NaN	NaN	0.00015064	1	4782	115.86	55.272	1	107340			13022	2370	10961	11246	13022	13022		
LQHFQELGEEK	11	Unmodified	_LQHFQELGEEK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.229736	1356.66738	-1.2067	-0.00054689	-0.73779	-0.00033439	-1.9445	-0.00088128	453.229423136982	5.2745	0.15076	5.2745	5.1859	5.3366	0	819	22	0.773912161060781	0.0143351345420983	0.773912161060781	469.690400852288	0	8.70005076560727						153	18	4	NaN	NaN	NaN	0.047812	1	14086	34.953	30.75	1	35494			13023	1668	10962	11247	13023	13023		
LQHTLQQVLDQR	12	Unmodified	_LQHTLQQVLDQR_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.607318	1477.80012	-1.5481	-0.00076414	-0.39359	-0.00019428	-1.9417	-0.00095842	493.607242532399	8.3874	0.133	8.3874	8.352	8.485	0	795	25	0.790287188799094	0.0163659109219131	0.790287188799094	479.23229835117	0	9.92433284618613						284	16	4	NaN	NaN	NaN	0.0019713	1	17834	99.34	93.474	1	95949			13024	70	10963	11248	13024	13024		
LQHTLQQVLDQR	12	Unmodified	_LQHTLQQVLDQR_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.907339	1477.80012	1.7158	0.0012695	0.54045	0.00039988	2.2563	0.0016694	739.907771316611	8.3785	0.070995	8.3785	8.343	8.414	0	408	28	1.0518390438467	0.0180866667822672	1.0518390438467	425.228052448088	0	7.31191538866466						169	9	3	NaN	NaN	NaN	0.0054128	1	17836	61.577	41.242	1	44219			13025	70	10963	11248	13025	13025		
LQHVEDGVLSMQVASAR	17	Unmodified	_LQHVEDGVLSMQVASAR_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.984237	1838.93088	0.62238	0.00038213	1.8924	0.0011619	2.5148	0.0015441	614.319647161842	9.5228	0.21281	9.5228	9.381	9.5938	0	570	70	0.942920803299286	0.0465807171253665	0.942920803299286	570.748100021658	0	28.1952160816954						350	25	2	NaN	NaN	NaN	0.0023535	1	28197	53.363	44.989	1	74819			13026	1567	10964	11249	13026	13026		
LQIDVDGR	8	Unmodified	_LQIDVDGR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.248349	914.482145	-1.4896	-0.00068259	0.50409	0.000231	-0.98547	-0.00045159	458.248437875653	6.986	0.14196	6.986	6.9417	7.0836	0	774	34	0.804600385996946	0.0224796529754165	0.804600385996946	327.128556972101	0	9.1396133621908						265	17	2	NaN	NaN	NaN	0.0015962	1	2589	65.313	37.608	1	87391			13027	1581	10965	11250	13027	13027		
LQIEDFEAR	9	Unmodified	_LQIEDFEAR_			0	0	0	Q9P0J0	Q9P0J0	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.785296	1119.55604	0.95814	0.00053731	1.971	0.0011053	2.9292	0.0016426	560.786071637265	10.383	0.16845	10.383	10.312	10.48	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	370.821324332665	0	9.04669933798681						196	20	2	NaN	NaN	NaN	0.032272	1	7251	40.502	14.046	1	70880			13028	3145	10966	11251	13028	13028		
LQIIPTLCHLLR	12	Unmodified	_LQIIPTLCHLLR_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.962156	1475.86464	-1.651	-0.0008139	-0.20562	-0.00010136	-1.8567	-0.00091527	492.962100942219	16.307	0.15073	16.307	16.227	16.377	0	726	28	0.837263974740672	0.0183541170899648	0.837263974740672	507.725316452218	0	11.1301216687244						280	18	4	NaN	NaN	NaN	0.0002458	1	17779	90.761	75.999	1	73429			13029	259	10967	11252	13029	13029		
LQILNLGAK	9	Unmodified	_LQILNLGAK_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.30821	968.601866	-1.1742	-0.00056986	-1.1631	-0.00056446	-2.3373	-0.0011343	485.307605064478	11.598	0.13308	11.598	11.562	11.695	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	337.641383248871	0	8.28744667386354						228	16	3	NaN	NaN	NaN	0.0013983	1	3607	65.313	2.0111	1	61064			13030	61	10968	11253	13030	13030		
LQIQCVVEDDK	11	Unmodified	_LQIQCVVEDDK_			0	0	0	P29692;P24534	P29692;P24534	P29692	EEF1D;EEF1B2	Elongation factor 1-delta;Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.834659	1345.65477	1.9505	0.0013143	0.80157	0.00054013	2.7521	0.0018544	673.835342499111	9.0706	0.44342	9.0706	8.9553	9.3987	0	501	79	0.98941132619024	0.0524564762308631	0.98941132619024	400.354503753955	0	21.2259410764521						2034	51	6	NaN	NaN	NaN	3.4736E-17	1	13774	212.4	97.759	1	2987000			13031	890;829	10969	11254	13031	13031		
LQISHEAAACITGLR	15	Unmodified	_LQISHEAAACITGLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.291001	1638.85117	-1.5641	-0.00085601	-0.32264	-0.00017658	-1.8867	-0.0010326	547.291126869868	9.5672	0.15959	9.5672	9.5317	9.6913	-1.7764E-15	777	31	0.802556497112065	0.020440313348464	0.802556497112065	486.22908378493	0	12.3837697002815						324	19	4	NaN	NaN	NaN	0.0018133	1	22735	57.279	52.462	1	114300			13032	1575	10970	11255	13032	13032		
LQISHEAAACITGLR	15	Unmodified	_LQISHEAAACITGLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.291001	1638.85117	-0.1329	-7.2733E-05	-1.1691	-0.00063986	-1.302	-0.00071259	547.290255569815	9.5672	0.11527	9.5672	9.5317	9.647	0	690	46	0.86171403876517	0.0305434851459953	0.86171403876517	522.069701056644	0	18.5047793607354						384	14	4	NaN	NaN	NaN	2.756E-06	1	22736	110.91	92.094	1	127370			13033	1575	10970	11255	13033	13033		
LQIVEMPLAHK	11	Unmodified	_LQIVEMPLAHK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	426.912803	1277.71658	-0.8971	-0.00038298	-1.7116	-0.00073069	-2.6087	-0.0011137	426.912159750884	10.463	0.15964	10.463	10.401	10.56	0	822	40	0.771863999559055	0.0266298140737402	0.771863999559055	468.73874953589	0	16.1717941974611						523	19	5	NaN	NaN	NaN	0.016156	1	11705	46.033	37.559	1	310120			13034	1164	10971	11256	13034	13034		
LQIVEMPLAHK	11	Unmodified	_LQIVEMPLAHK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.865566	1277.71658	1.6871	0.0010795	1.3993	0.00089536	3.0864	0.0019749	639.866476738276	10.472	0.18625	10.472	10.41	10.596	0	498	52	0.991429299781895	0.0343008202901166	0.991429299781895	401.387834927615	0	13.8869529027635						508	22	4	NaN	NaN	NaN	2.9566E-05	1	11706	78.932	53.678	1	164480			13035	1164	10971	11256	13035	13035		
LQIWDTAGQESFR	13	Unmodified	_LQIWDTAGQESFR_			0	0	0	P61019;Q8WUD1	P61019	P61019	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.88353	1549.75251	1.9461	0.0015099	1.1112	0.00086215	3.0573	0.0023721	775.885469060836	12.671	0.20396	12.671	12.6	12.804	0	405	52	1.05384839605172	0.0341637123767462	1.05384839605172	425.856826412261	0	13.8054488536778						639	24	5	NaN	NaN	NaN	7.8091E-06	1	20042	119.55	87.41	1	262700			13036	1322	10972	11257	13036	13036		
LQLCYQLTTVGK	12	Unmodified	_LQLCYQLTTVGK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.384319	1422.75409	0.69525	0.00049528	0.89088	0.00063465	1.5861	0.0011299	712.385032300332	11.944	0.1596	11.944	11.908	12.068	0	438	34	1.03173026378327	0.0221364589535984	1.03173026378327	417.248320943675	0	8.95234021357317						321	19	3	NaN	NaN	NaN	2.4958E-05	1	16181	106	85.82	1	119690			13037	1241	10973	11258	13037	13037		
LQLDNQYAVLENQK	14	Unmodified	_LQLDNQYAVLENQK_			0	0	0	Q9UKY7	Q9UKY7	Q9UKY7	CDV3	Protein CDV3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.436126	1674.8577	2.9582	0.0024803	-0.86387	-0.0007243	2.0944	0.001756	838.435736295324	10.844	0.097539	10.844	10.809	10.906	0	339	34	1.09798411722691	0.0220329079288653	1.09798411722691	443.398351271829	0	8.89753767482222						234	12	3	NaN	NaN	NaN	1.6246E-05	1	23774	79.795	72.219	1	61667			13038	3271	10974	11259	13038	13038		
LQLDSPEDAEFIVAK	15	Unmodified	_LQLDSPEDAEFIVAK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.932885	1673.85122	2.7678	0.0023192	0.39573	0.0003316	3.1635	0.0026508	837.933279029675	13.921	0.22168	13.921	13.832	14.054	0	303	118	1.12200181823275	0.0778913278416553	1.12200181823275	453.099637826303	0	31.4549690217549						1106	26	2	NaN	NaN	NaN	1.5311E-05	1	23739	106.47	70.255	1	603120			13039	191	10975	11260	13039	13039		
LQLEATER	8	Unmodified	_LQLEATER_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.261456	958.50836	1.2445	0.00059768	-0.33981	-0.0001632	0.90468	0.00043449	480.261237753652	5.0529	0.13298	5.0529	4.9997	5.1327	0	693	34	0.85967808974117	0.0223985529654932	0.85967808974117	349.283993189974	0	9.10044831294937						263	16	3	NaN	NaN	NaN	0.002226	1	3408	85.813	25.104	1	85414			13040	1816	10976	11261	13040	13040		
LQLEETDHQK	10	Unmodified	_LQLEETDHQK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.210453	1239.60953	-0.064502	-2.6717E-05	-0.88859	-0.00036806	-0.95309	-0.00039478	414.210402988486	3.2084	0.20394	3.2084	3.1818	3.3858	0	888	31	0.726732155490709	0.0205488250141644	0.726732155490709	441.475832580643	0	12.4830166976122						315	24	4	NaN	NaN	NaN	0.012515	1	10606	33.426	32.634	1	69499			13041	1816	10977	11262	13041	13041		
LQLEETDHQK	10	Unmodified	_LQLEETDHQK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.812042	1239.60953	2.4575	0.0015257	-0.65453	-0.00040634	1.803	0.0011193	620.812656365462	3.2084	0.24826	3.2084	3.173	3.4213	0	561	31	0.948993180460448	0.0202342542182106	0.948993180460448	384.333528129318	0	8.19468724630576						369	29	4	NaN	NaN	NaN	0.00065962	1	10608	107.08	90.621	1	78410			13042	1816	10977	11262	13042	13042		
LQLEETMPSPYGR	13	Unmodified	_LQLEETMPSPYGR_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.874316	1519.73408	2.1728	0.0016532	0.85562	0.00065102	3.0284	0.0023042	761.375532879696	10.995	0.21282	10.995	10.888	11.101	0	417	28	1.04580932352505	0.0180966528124649	1.04580932352505	422.682170104429	0	7.31407945056037						346	25	3	NaN	NaN	NaN	0.023028	1	19126	46.068	39.805	1	91365			13043	1534	10978	11263	13043	13043		
LQLEIDQK	8	Unmodified	_LQLEIDQK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.779482	985.544411	0.66015	0.00032597	0.14119	6.9719E-05	0.80134	0.00039569	493.779916954119	7.8463	0.31052	7.8463	7.7753	8.0858	0	708	67	0.849494101904619	0.0448002364855021	0.849494101904619	345.01236533957	0	18.1951063850596						736	36	4	NaN	NaN	NaN	0.00011309	1	3968	130	16.899	1	518850			13044	3332	10979	11264	13044	13044		
LQLELSK	7	Unmodified	_LQLELSK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.752736	829.490919	-1.4406	-0.00059893	-0.75459	-0.00031372	-2.1952	-0.00091265	415.752469344469	7.8108	0.21284	7.8108	7.7398	7.9527	0	792	52	0.792332785124922	0.0347848332569718	0.792332785124922	322.628819135955	0	14.163984992453						466	25	3	NaN	NaN	NaN	0.0098096	1	1312	63.301	0	1	166820			13045	493	10980	11265	13045	13045		
LQLEQQVATGPALDNK	16	Unmodified	_LQLEQQVATGPALDNK_			0	0	0	O15031	O15031	O15031	PLXNB2	Plexin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.962508	1723.91046	2.6138	0.0022556	0.24584	0.00021215	2.8597	0.0024678	863.464356356164	9.6381	0.079809	9.6381	9.6026	9.6824	0	318	49	1.11199926528787	0.0320147885627269	1.11199926528787	448.953210950384	0	12.9254960608387						242	10	3	NaN	NaN	NaN	0.0041235	1	25174	31.722	16.574	1	54477			13046	139	10981	11266	13046	13046		
LQLETEIEALK	11	Unmodified	_LQLETEIEALK_			0	0	0	CON__P05784;P05783	CON__P05784;P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.863743	1285.71293	1.3521	0.00087057	1.01	0.00065028	2.3621	0.0015209	643.86475483423	13.708	0.38126	13.708	13.655	14.036	0	504	94	0.987393073566096	0.0625659031175708	0.987393073566096	399.727151019029	0	25.328606077613						1213	44	5	NaN	NaN	NaN	1.9461E-07	1	11942	156.57	91.415	1	958640		+	13047	536;27	10982	11267	13047	13047		
LQLIPGVCGFR	11	Unmodified	_LQLIPGVCGFR_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.350083	1258.68561	0.31526	0.00019872	-1.5339	-0.00096689	-1.2186	-0.00076816	630.349723912461	14.772	0.22169	14.772	14.657	14.879	0	570	79	0.942920803299286	0.0525945332540456	0.942920803299286	381.810523262621	0	21.2967475022467						914	26	4	NaN	NaN	NaN	0.00049097	1	11178	87.251	17.535	1	269010			13048	1903	10983	11268	13048	13048		
LQLLEDDK	8	Unmodified	_LQLLEDDK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.263665	972.512776	0.64483	0.0003142	2.1124	0.0010293	2.7573	0.0013435	487.263228853424	7.802	0.3459	7.802	7.6422	7.9881	0	714	79	0.845418525735192	0.0530046236875498	0.845418525735192	343.420426236868	0	21.5311942016808						987	40	4	NaN	NaN	NaN	0.0018943	1	3687	79.809	19.101	1	387100			13049	611	10984	11269	13049	13049		
LQLLEPFDK	9	Unmodified	_LQLLEPFDK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.810782	1101.60701	0.68345	0.00037714	-1.9768	-0.0010908	-1.2933	-0.00071366	551.809130707844	13.886	0.20393	13.886	13.815	14.019	0	648	61	0.890187667287968	0.0406371291236521	0.890187667287968	361.014834432031	0	16.4803523812721						616	24	4	NaN	NaN	NaN	0.00087654	1	6768	96.311	58.588	1	298390			13050	2674	10985	11270	13050	13050		
LQLLLLNPLK	10	Unmodified	_LQLLLLNPLK_			0	0	0	Q7Z3U7	Q7Z3U7	Q7Z3U7	MON2	Protein MON2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.889367	1163.76418	0.20298	0.00011831	-0.4531	-0.00026411	-0.25013	-0.0001458	582.889050157759	17.743	0.097536	17.743	17.699	17.796	0	585	46	0.932794566565362	0.0303997669355048	0.932794566565362	378.044284288226	0	12.3204599872167						226	12	3	NaN	NaN	NaN	2.7532E-08	1	8448	155.82	123.69	1	52264			13051	2133	10986	11271	13051	13051		
LQLLSLVTK	9	Unmodified	_LQLLSLVTK_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.831517	1013.64848	-1.1688	-0.00059358	-2.8818	-0.0014635	-4.0506	-0.002057	507.829321568319	14.781	0.15076	14.781	14.728	14.879	0	687	55	0.863749705078866	0.0366191214696816	0.863749705078866	350.668227842417	0	14.8667633174438						368	18	3	NaN	NaN	NaN	7.575E-06	1	4608	133.98	82.521	1	158790			13052	259	10987	11272	13052	13052		
LQLLSNLFHGMDK	13	Unmodified	_LQLLSNLFHGMDK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.937788	1514.79153	-1.7962	-0.00090878	-0.058063	-2.9376E-05	-1.8543	-0.00093816	505.938016198521	15.712	0.22168	15.712	15.659	15.881	-1.7764E-15	768	46	0.808687310729125	0.0306540760963989	0.808687310729125	490.279220507212	0	18.5845089127969						747	26	5	NaN	NaN	NaN	5.8195E-06	1	18974	125.17	90.219	1	537580			13053	2115	10988	11273	13053	13053		
LQLLSNLFHGMDK	13	Unmodified	_LQLLSNLFHGMDK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.403044	1514.79153	1.4897	0.0011298	1.2707	0.00096371	2.7604	0.0020935	758.404208997328	15.712	0.19508	15.712	15.65	15.845	0	294	40	1.12800004657306	0.0259887509871912	1.12800004657306	455.914416092756	0	10.5041185656884						601	23	5	NaN	NaN	NaN	2.7947E-07	1	18976	141.44	114.5	1	325330			13054	2115	10988	11273	13054	13054		
LQLLSNLFHGMDK	13	Oxidation (M)	_LQLLSNLFHGM(Oxidation (M))DK_	LQLLSNLFHGM(1)DK	LQLLSNLFHGM(41)DK	0	1	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.269426	1530.78645	-1.2368	-0.00063234	-1.3258	-0.00067784	-2.5626	-0.0013102	511.268720927585	13.895	0.097555	13.895	13.85	13.948	0	774	28	0.804600385996946	0.0183924424534009	0.804600385996946	487.755370026748	0	11.149649851881						206	12	3	NaN	NaN	NaN	0.0048393	1	19467	40.533	29.178	1	65051			13055	2115	10988	11274	13055	13055	589	
LQLLTGEHRPEDEEELEK	18	Unmodified	_LQLLTGEHRPEDEEELEK_			0	0	1	Q13505	Q13505	Q13505	MTX1	Metaxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	542.023474	2164.06479	1.2001	0.0006505	-0.86815	-0.00047056	0.33198	0.00017994	542.27315921976	7.7398	0.097499	7.7398	7.6956	7.7931	0	672	25	0.873923798053065	0.0162751600009597	0.873923798053065	704.51731637109	0	13.1202881451799						139	12	4	NaN	NaN	NaN	0.029413	1	34241	19.006	18.487	1	34871			13056	1674	10989	11275	13056	13056		
LQLLTGEHRPEDEEELEK	18	Unmodified	_LQLLTGEHRPEDEEELEK_			0	0	1	Q13505	Q13505	Q13505	MTX1	Metaxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.362207	2164.06479	2.4208	0.0017487	-0.045899	-3.3156E-05	2.3749	0.0017156	722.69668404367	7.7398	0.088795	7.7398	7.7132	7.802	0	522	43	0.975277694896658	0.028273132407321	0.975277694896658	589.669882408071	0	17.0944283347927						264	11	4	NaN	NaN	NaN	0.0014291	1	34242	51.577	39.407	1	71634			13057	1674	10989	11275	13057	13057		
LQLLTWTPLEAK	12	Unmodified	_LQLLTWTPLEAK_			0	0	0	Q9Y5B6	Q9Y5B6	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.911027	1411.8075	0.62408	0.00044117	1.0201	0.00072114	1.6442	0.0011623	706.911686244672	17.14	0.079803	17.14	17.105	17.184	0	405	46	1.05384839605172	0.03014029110692	1.05384839605172	426.225062351805	0	12.1901285844137						168	10	2	NaN	NaN	NaN	0.029981	1	15827	30.349	12.618	1	30200			13058	3428	10990	11276	13058	13058		
LQLNYLGNYIPR	12	Unmodified	_LQLNYLGNYIPR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.403901	1462.79325	1.0787	0.00079008	2.4095	0.0017648	3.4883	0.0025548	732.405269629409	15.349	0.2306	15.349	15.26	15.491	0	402	49	1.05585747106793	0.0321562992894993	1.05585747106793	426.893199675326	0	13.0010970889161						485	27	4	NaN	NaN	NaN	0.00066478	1	17363	63.397	48.942	1	104850			13059	1531	10991	11277	13059	13059		
LQLPVWEYK	9	Unmodified	_LQLPVWEYK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.326599	1174.63865	1.1194	0.00065857	-0.77946	-0.00045858	0.33993	0.00019999	588.326242247921	13.957	0.3724	13.957	13.895	14.267	0	582	64	0.934820374997243	0.0425478933681714	0.934820374997243	378.82422396856	0	17.241999765722						708	43	4	NaN	NaN	NaN	0.00013496	1	8734	91.783	40.352	1	315330			13060	181	10992	11278	13060	13060		
LQLSLADFR	9	Unmodified	_LQLSLADFR_			0	0	0	O00541	O00541	O00541	PES1	Pescadillo homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.800749	1061.58694	0.09116	4.8479E-05	-2.3123	-0.0012297	-2.2211	-0.0011812	531.799601410461	14.382	0.16845	14.382	14.329	14.498	0	663	37	0.880024865079826	0.0243991920216602	0.880024865079826	357.059495680446	0	9.89967845678325						418	20	4	NaN	NaN	NaN	8.2362E-09	1	5773	158.61	121.01	1	197260			13061	90	10993	11279	13061	13061		
LQLTDLLIK	9	Unmodified	_LQLTDLLIK_			0	0	0	O75962	O75962	O75962	TRIO	Triple functional domain protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.8368	1055.65905	-1.1316	-0.00059846	-1.6673	-0.00088174	-2.799	-0.0014802	528.835959581471	15.934	0.12412	15.934	15.899	16.023	0	684	28	0.86578508874114	0.018315911392907	0.86578508874114	351.307136267421	0	7.43199491796031						194	15	3	NaN	NaN	NaN	0.067521	1	5621	24.121	2.8465	1	46017			13062	374	10994	11280	13062	13062		
LQLWAFK	7	Unmodified	_LQLWAFK_			0	0	0	Q9Y613	Q9Y613	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.265813	904.517074	-2.2651	-0.0010267	-0.043151	-1.9559E-05	-2.3082	-0.0010462	453.265711003121	14.178	0.070929	14.178	14.152	14.223	0	801	22	0.78619514174348	0.0143251567743449	0.78619514174348	319.697592243791	0	5.82516717047736						91	9	2	NaN	NaN	NaN	0.023605	1	2408	54.056	11.827	1	21694			13063	3449	10995	11281	13063	13063		
LQLWDIAGQER	11	Unmodified	_LQLWDIAGQER_			0	0	0	Q13637;O14966;P57729	Q13637	Q13637	RAB32;RAB29;RAB38	Ras-related protein Rab-32;Ras-related protein Rab-7L1;Ras-related protein Rab-38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.851501	1327.68845	0.82242	0.00054679	-0.57366	-0.0003814	0.24876	0.00016539	664.8512907098	13.957	0.15074	13.957	13.912	14.063	0	540	34	0.963152256458504	0.0222407417065758	0.963152256458504	389.782674144064	0	9.00071169350997						382	18	4	NaN	NaN	NaN	0.00010906	1	13221	76.85	59.38	1	124320			13064	1699	10996	11282	13064	13064		
LQLWDTAGQER	11	Unmodified	_LQLWDTAGQER_			0	0	0	P20340;Q9NRW1;Q14964	P20340	P20340	RAB6A;RAB6B;RAB39A	Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.833308	1315.65206	1.9311	0.0012723	0.093057	6.1309E-05	2.0242	0.0013336	658.833804273901	9.709	0.38127	9.709	9.6292	10.01	0	534	76	0.967195187796614	0.0505401760734462	0.967195187796614	391.455708634119	0	20.4552717889291						1260	44	4	NaN	NaN	NaN	1.8939E-23	1	12840	224.68	0	1	1068800			13065	780	10997	11283	13065	13065		
LQLWDTAGQER	11	Unmodified	_LQLWDTAGQER_			0	0	0	P20340;Q9NRW1;Q14964	P20340	P20340	RAB6A;RAB6B;RAB39A	Ras-related protein Rab-6A;Ras-related protein Rab-6B;Ras-related protein Rab-39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.833308	1315.65206	1.1622	0.00076569	2.1083	0.001389	3.2704	0.0021547	659.337985360454	10.259	0.31033	10.259	10.143	10.454	0	522	97	0.975277694896658	0.0645975599837171	0.975277694896658	394.726956854086	0	26.1447569302544						835	36	4	NaN	NaN	NaN	0.00048347	1	12841	99.855	0	1	300120			13066	780	10997	11283	13066	13066		
LQMEAPHIIVGTPGR	15	Unmodified	_LQMEAPHIIVGTPGR_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.295975	1617.8661	0.70428	0.00038052	-0.7016	-0.00037907	0.0026795	1.4477E-06	540.295818669303	10.64	0.37243	10.64	10.507	10.879	0	699	139	0.85560534332665	0.0936083891183895	0.85560534332665	518.425032920654	0	56.7188278905165						2769	43	6	NaN	NaN	NaN	3.9701E-07	1	22135	144.51	116.93	1	2164600			13067	1311	10998	11284	13067	13067		
LQMEAPHIIVGTPGR	15	Unmodified	_LQMEAPHIIVGTPGR_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.940324	1617.8661	3.0948	0.0025066	-0.58862	-0.00047675	2.5062	0.0020299	809.940281117593	10.631	0.22166	10.631	10.525	10.746	0	333	85	1.10198982404297	0.0561185896384611	1.10198982404297	445.144584762613	0	22.668890163093						1295	26	4	NaN	NaN	NaN	8.5587E-07	1	22136	67.838	61.462	1	401460			13068	1311	10998	11284	13068	13068		
LQMEAPHIIVGTPGR	15	Oxidation (M)	_LQM(Oxidation (M))EAPHIIVGTPGR_	LQM(1)EAPHIIVGTPGR	LQM(52)EAPHIIVGTPGR	0	1	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.627613	1633.86101	1.1763	0.00064181	0.68303	0.00037268	1.8593	0.0010145	545.628098200666	7.66	0.20402	7.66	7.5624	7.7664	0	645	55	0.892219381832517	0.0365835629359025	0.892219381832517	540.565185831284	0	22.1647286524973						573	24	4	NaN	NaN	NaN	0.0045705	1	22599	51.569	40.213	1	197940			13069	1311	10998	11285	13069	13069	473	
LQMEAPHIIVGTPGR	15	Oxidation (M)	_LQM(Oxidation (M))EAPHIIVGTPGR_	LQM(1)EAPHIIVGTPGR	LQM(76)EAPHIIVGTPGR	0	1	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.937782	1633.86101	2.8953	0.0023682	-0.92151	-0.00075374	1.9738	0.0016145	817.937010522831	7.6156	0.15967	7.6156	7.5713	7.7309	0	342	46	1.09598084995137	0.0300490171163135	1.09598084995137	442.680489340046	0	12.1371770335471						274	19	2	NaN	NaN	NaN	0.00041138	1	22600	76.196	68.62	1	88146			13070	1311	10998	11285	13070	13070	473	
LQMEQQQQLQQR	12	Unmodified	_LQMEQQQQLQQR_			0	0	0	Q9NS69	Q9NS69	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.393738	1556.77292	2.9663	0.0023119	-2.5097	-0.001956	0.45657	0.00035585	779.391735708248	5.0972	0.070938	5.0972	5.0706	5.1415	0	420	34	1.04379886199097	0.0221181322684503	1.04379886199097	421.779011507478	0	8.93751114729554						170	9	3	NaN	NaN	NaN	2.0244E-17	1	20261	187.33	165.29	1	41180			13071	3033	10999	11286	13071	13071		
LQMTIENMNHLK	12	Unmodified	_LQMTIENMNHLK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.251378	1470.7323	-0.86069	-0.00042282	0.048079	2.3619E-05	-0.81262	-0.0003992	491.251723590266	8.9908	0.10642	8.9908	8.9375	9.044	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	500.318850092336	0	9.90132904975491						157	13	4	NaN	NaN	NaN	0.0383	1	17610	30.918	27.31	1	35909			13072	2735	11000	11287	13072	13072		
LQNEILK	7	Unmodified	_LQNEILK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.258185	856.501818	-0.51217	-0.00021985	0.82405	0.00035373	0.31189	0.00013388	429.258505519649	5.3012	0.19511	5.3012	5.2568	5.4519	0	732	34	0.833184998970724	0.0224390480115776	0.833184998970724	339.089375335209	0	9.13223687747882						367	23	3	NaN	NaN	NaN	0.0051176	1	1658	108.92	24.225	1	125860			13073	1567	11001	11288	13073	13073		
LQNELDLTK	9	Unmodified	_LQNELDLTK_			0	0	0	Q8NB25	Q8NB25	Q8NB25	FAM184A	Protein FAM184A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.295496	1072.57644	1.1076	0.00059508	-2.6885	-0.0014445	-1.581	-0.00084944	537.294558622396	7.2521	0.25712	7.2521	7.1989	7.456	0	642	34	0.894250814548268	0.0223395647977513	0.894250814548268	362.783891088659	0	9.06282008437358						279	30	3	NaN	NaN	NaN	0.0029762	1	6020	65.156	0	1	88902			13074	2282	11002	11289	13074	13074		
LQNNNVYTIAK	11	Unmodified	_LQNNNVYTIAK_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.346052	1276.67755	2.3182	0.0014821	-0.88644	-0.00056674	1.4318	0.00091539	639.345871183219	6.0106	0.17728	6.0106	5.9663	6.1436	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.574338685496	0	11.4403664234603						413	21	3	NaN	NaN	NaN	0.0033256	1	11679	50.297	27.911	1	149920			13075	1423	11003	11290	13075	13075		
LQNVQIALDYLR	12	Unmodified	_LQNVQIALDYLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.409183	1444.80381	0.98872	0.00071525	-0.74585	-0.00053955	0.24287	0.00017569	723.408653231559	15.047	0.11526	15.047	15.003	15.118	1.7764E-15	477	46	1.0055473068722	0.0302319815976242	1.0055473068722	406.599761401499	0	12.2245034323888						379	14	4	NaN	NaN	NaN	3.5243E-11	1	16833	141.29	120.2	1	152450			13076	1816	11004	11291	13076	13076		
LQPAYQVTLPGQEPIVK	17	Unmodified	_LQPAYQVTLPGQEPIVK_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.027651	1880.04075	2.6207	0.0024661	-0.48904	-0.0004602	2.1317	0.0020059	941.528740298784	12.839	0.097532	12.839	12.795	12.893	0	186	67	1.1997861197946	0.0437909492185982	1.1997861197946	484.074842639646	0	17.6682297805401						510	12	4	NaN	NaN	NaN	5.783E-07	1	29157	108.91	103.53	1	138990			13077	1030	11005	11292	13077	13077		
LQPHEFQGGTFTISNLGMFGIK	22	Unmodified	_LQPHEFQGGTFTISNLGMFGIK_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.078977	2421.2151	0.75643	0.00061125	-1.1243	-0.00090852	-0.36786	-0.00029726	808.412776970626	17.131	0.19507	17.131	17.087	17.282	0	525	67	0.973257487423603	0.04447227026681	0.973257487423603	588.050006201067	0	26.8705035862629						733	23	6	NaN	NaN	NaN	1.9751E-06	1	36446	114.35	104.02	1	199850			13078	626	11006	11293	13078	13078		
LQPHPQLSPEIR	12	Unmodified	_LQPHPQLSPEIR_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.264892	1413.77285	0.2148	0.00010144	2.09	0.00098705	2.3048	0.0010885	472.265942105126	6.3565	0.18621	6.3565	6.2944	6.4806	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	527.703670417052	0	12.3435146367275						270	22	3	NaN	NaN	NaN	0.0086894	1	15901	32.549	31.292	1	67754			13079	1709	11007	11294	13079	13079		
LQPLSPVPSDIEISR	15	Unmodified	_LQPLSPVPSDIEISR_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.956694	1649.89884	2.0548	0.0016972	-2.2735	-0.0018778	-0.21873	-0.00018067	825.954701085015	13.123	0.13303	13.123	13.043	13.176	0	351	43	1.08996939197032	0.0280592752418065	1.08996939197032	440.216408246823	0	11.3325690207028						282	16	3	NaN	NaN	NaN	0.0028972	1	23051	50.314	42.313	1	79032			13080	2083	11008	11295	13080	13080		
LQPSSSPENSLDPFPPR	17	Unmodified	_LQPSSSPENSLDPFPPR_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.462872	1866.91119	1.6756	0.0015658	-5.4272	-0.0050715	-3.7516	-0.0035058	934.456917515689	11.553	0.25722	11.553	11.491	11.749	0	261	67	1.14997238118939	0.0439054229632809	1.14997238118939	464.000531083032	0	17.7153294336662						633	30	4	NaN	NaN	NaN	0.036212	1	28865	34.472	28.096	1	123220			13081	2391	11009	11296	13081	13081		
LQQDVLQFQK	10	Unmodified	_LQQDVLQFQK_			0	0	0	Q8NBJ4	Q8NBJ4	Q8NBJ4	GOLM1	Golgi membrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.843145	1245.67174	1.3468	0.00084016	-1.5541	-0.00096955	-0.20739	-0.00012938	623.842448207339	9.1238	0.11528	9.1238	9.0883	9.2036	0	564	28	0.946969335010767	0.018214610793113	0.946969335010767	383.493335390268	0	7.37635484871009						252	14	3	NaN	NaN	NaN	2.804E-05	1	10799	124.81	89.874	1	109370			13082	2288	11010	11297	13082	13082		
LQQEETQLEQSIQAGR	16	Unmodified	_LQQEETQLEQSIQAGR_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.468686	1856.92282	2.3	0.0021378	-2.8319	-0.0026322	-0.53189	-0.00049438	929.967381835798	9.1326	0.10642	9.1326	9.0883	9.1947	0	282	64	1.13599383354359	0.041952970811898	1.13599383354359	458.378525240425	0	16.9282088708402						440	13	4	NaN	NaN	NaN	1.8392E-18	1	28626	169.52	161.56	1	124730			13083	3170	11011	11298	13083	13083		
LQQELDDLLVDLDHQR	16	Unmodified	_LQQELDDLLVDLDHQR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.669083	1948.98542	0.43707	0.00028439	-0.95989	-0.00062457	-0.52282	-0.00034018	651.003032396123	16.404	0.25715	16.404	16.342	16.599	0	585	52	0.932794566565362	0.0344578460236871	0.932794566565362	564.380227768799	0	20.8484565458798						1007	30	6	NaN	NaN	NaN	8.0741E-18	1	30701	218.12	165.29	1	922930			13084	972	11012	11299	13084	13084		
LQQELDDLLVDLDHQR	16	Unmodified	_LQQELDDLLVDLDHQR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.499986	1948.98542	0.78883	0.0007695	0.3139	0.00030621	1.1027	0.0010757	975.500232987958	16.404	0.15072	16.404	16.351	16.502	0	114	79	1.24744674793813	0.0515969633064737	1.24744674793813	503.173917679307	0	20.8123081888554						797	18	5	NaN	NaN	NaN	2.0218E-33	1	30702	189.13	155.38	1	295440			13085	972	11012	11299	13085	13085		
LQQELEFLEVQEEYIK	16	Unmodified	_LQQELEFLEVQEEYIK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.017489	2037.03064	-0.36858	-0.00025064	-0.7142	-0.00048567	-1.0828	-0.00073631	680.35105510925	16.83	0.088653	16.83	16.794	16.883	0	570	40	0.942920803299286	0.0263136394103891	0.942920803299286	570.332824951913	0	15.916005084607						245	11	3	NaN	NaN	NaN	0.0020429	1	32292	54.309	49.492	1	58071			13086	1068	11013	11300	13086	13086		
LQQELEFLEVQEEYIK	16	Unmodified	_LQQELEFLEVQEEYIK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.5226	2037.03064	0.65457	0.00066735	-1.5283	-0.0015581	-0.87372	-0.00089078	1020.0237923992	16.821	0.17731	16.821	16.732	16.91	0	195	55	1.19381749893585	0.0358092804160572	1.19381749893585	481.394680618897	0	14.4397256066748						489	21	4	NaN	NaN	NaN	5.2395E-05	1	32293	98.167	88.146	1	127840			13087	1068	11013	11300	13087	13087		
LQQENSILR	9	Unmodified	_LQQENSILR_			0	0	0	Q9P2E9;Q8N4C6	Q9P2E9	Q9P2E9	RRBP1;NIN	Ribosome-binding protein 1;Ninein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.806562	1099.59857	0.83393	0.00045934	0.28429	0.00015659	1.1182	0.00061592	550.807044897804	5.5317	0.15085	5.5317	5.4962	5.6471	0	642	28	0.894250814548268	0.0182828962008553	0.894250814548268	362.67081395653	0	7.41477976734797						168	18	2	NaN	NaN	NaN	0.0069061	1	6711	49.96	31.558	1	43780			13088	3158	11014	11301	13088	13088		
LQQESTFLFHGNK	13	Unmodified	_LQQESTFLFHGNK_			0	0	0	Q9UKX7	Q9UKX7	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.93169	1547.77324	0.1651	8.5344E-05	-0.069531	-3.5943E-05	0.095567	4.9402E-05	516.931649050273	7.8285	0.11529	7.8285	7.7842	7.8995	0	723	28	0.839303037468863	0.0183515663260597	0.839303037468863	508.7424138517	0	11.1237773889571						217	14	3	NaN	NaN	NaN	0.012797	1	19978	44.57	41.899	1	59589			13089	3270	11015	11302	13089	13089		
LQQETAELEESVESGK	16	Unmodified	_LQQETAELEESVESGK_			0	0	0	P42566	P42566	P42566	EPS15	Epidermal growth factor receptor substrate 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.928528	1775.8425	2.3676	0.0021047	-3.9915	-0.0035481	-1.6238	-0.0014435	888.924358590879	8.9287	0.088808	8.9287	8.8842	8.973	0	294	40	1.12800004657306	0.0259923277309138	1.12800004657306	455.307057141658	0	10.4915689351058						216	11	3	NaN	NaN	NaN	1.5487E-08	1	26559	106.97	93.797	1	48109			13090	1050	11016	11303	13090	13090		
LQQLFNHTMFILEQEEYQR	19	Unmodified	_LQQLFNHTMFILEQEEYQR_			0	0	0	P35579;P35580;P35749	P35579	P35579	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.074003	2466.20018	1.3517	0.0011125	0.2169	0.00017853	1.5686	0.001291	823.408668985743	15.748	0.079823	15.748	15.721	15.801	0	402	79	1.05585747106793	0.0522900806407443	1.05585747106793	637.891187531699	0	31.5907994687159						522	10	4	NaN	NaN	NaN	1.1965E-19	1	36658	175.62	148.69	1	102580			13091	972	11017	11304	13091	13091		
LQQLGEAHQAETEVLR	16	Unmodified	_LQQLGEAHQAETEVLR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.986635	1820.93808	-0.21296	-0.00012948	1.1222	0.0006823	0.90928	0.00055283	607.987374919343	7.8995	0.10638	7.8995	7.8552	7.9615	0	717	34	0.84338031290707	0.0224203443559257	0.84338031290707	510.534159869326	0	13.5719929604222						316	13	4	NaN	NaN	NaN	1.2162E-06	1	27753	79.235	58.9	1	122930			13092	1782	11018	11305	13092	13092		
LQQLGEAHQAETEVLR	16	Unmodified	_LQQLGEAHQAETEVLR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.476314	1820.93808	2.0268	0.0018474	-0.8723	-0.00079508	1.1545	0.0010523	911.475619831072	7.8906	0.07095	7.8906	7.864	7.935	0	225	46	1.17390432875292	0.0298923356935374	1.17390432875292	473.744971811839	0	12.0634564364959						261	9	4	NaN	NaN	NaN	0.00014108	1	27754	67.887	64.151	1	57554			13093	1782	11018	11305	13093	13093		
LQQLPADFGR	10	Unmodified	_LQQLPADFGR_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.809105	1143.60366	0.94673	0.0005423	-0.45506	-0.00026066	0.49167	0.00028163	572.809120820763	8.9287	0.24845	8.9287	8.8576	9.106	0	636	43	0.898312834727904	0.0284302042688603	0.898312834727904	364.144643660526	0	11.5246116970108						865	29	5	NaN	NaN	NaN	1.3361E-10	1	7896	188.98	132.89	1	723680			13094	2474	11019	11306	13094	13094		
LQQQLTQAAQELAAEK	16	Unmodified	_LQQQLTQAAQELAAEK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.47324	1768.93193	1.678	0.0014858	0.46168	0.00040881	2.1397	0.0018946	885.47365486367	11.855	0.1153	11.855	11.811	11.926	1.7764E-15	222	49	1.17589687683038	0.0318829689216293	1.17589687683038	474.654530134421	0	12.8696622390718						386	14	4	NaN	NaN	NaN	1.0491E-09	1	26387	141.88	129.2	1	107050			13095	1810	11020	11307	13095	13095		
LQQQLTQAQETLK	13	Unmodified	_LQQQLTQAQETLK_			0	0	0	Q9Y4P3	Q9Y4P3	Q9Y4P3	TBL2	Transducin beta-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.920112	1527.82567	3.067	0.002346	-2.3225	-0.0017765	0.74454	0.00056952	764.918294846932	7.1989	0.16853	7.1989	7.1545	7.3231	0	339	43	1.09798411722691	0.0280476801589677	1.09798411722691	443.748326053096	0	11.3354199982862						535	20	4	NaN	NaN	NaN	1.4273E-25	1	19364	216.04	163.45	1	248340			13096	3413	11021	11308	13096	13096		
LQQSHPLSATQIQVK	15	Unmodified	_LQQSHPLSATQIQVK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.467761	1676.92097	2.8774	0.0024155	-2.2401	-0.0018805	0.63732	0.00053501	839.465997957566	6.2146	0.070964	6.2146	6.1879	6.2589	0	324	43	1.1079963157843	0.0280283709863309	1.1079963157843	447.437059694237	0	11.3185682330234						233	9	3	NaN	NaN	NaN	3.8899E-06	1	23828	80.815	65.199	1	62468			13097	1703	11022	11309	13097	13097		
LQQSHPLSATQIQVK	15	Unmodified	_LQQSHPLSATQIQVK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.980933	1676.92097	1.1524	0.00064531	1.4539	0.00081416	2.6063	0.0014595	559.982051995741	6.2146	0.088677	6.2146	6.1791	6.2678	0	609	37	0.916577990479294	0.0243451033539596	0.916577990479294	555.203467284073	0	14.746683788948						210	11	3	NaN	NaN	NaN	0.024623	1	23829	39.702	34.315	1	53517			13098	1703	11022	11309	13098	13098		
LQQTEAELR	9	Unmodified	_LQQTEAELR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.290745	1086.56694	2.3929	0.0013024	-3.7642	-0.0020488	-1.3712	-0.00074635	544.290721902566	3.9356	0.23064	3.9356	3.8647	4.0953	0	645	55	0.892219381832517	0.0365632670229064	0.892219381832517	361.900675065707	0	14.8307370223453						579	27	3	NaN	NaN	NaN	0.063729	1	6382	39.01	14.159	1	230530			13099	858	11023	11310	13099	13099		
LQQTQNQVDEVVDIMR	16	Unmodified	_LQQTQNQVDEVVDIMR_			0	0	0	Q15836	Q15836	Q15836	VAMP3	Vesicle-associated membrane protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.480739	1914.94693	1.655	0.0015863	-2.5412	-0.0024357	-0.88623	-0.00084943	958.979175300518	13.7	0.20394	13.7	13.602	13.806	1.7764E-15	255	34	1.15396378101328	0.0219511929599736	1.15396378101328	465.524846271553	0	8.85541287889993						411	24	4	NaN	NaN	NaN	1.243E-12	1	29952	133.13	107.42	1	94964			13100	1873	11024	11311	13100	13100		
LQQTYAALNSK	11	Unmodified	_LQQTYAALNSK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.832777	1235.651	1.4168	0.00087677	-0.97041	-0.00060052	0.44641	0.00027625	618.832326303668	5.2835	0.17736	5.2835	5.2036	5.381	0	555	40	0.953040030838688	0.0262954306323098	0.953040030838688	385.98608543679	0	10.6497838560969						314	21	3	NaN	NaN	NaN	9.0993E-05	1	10493	101.45	64.876	1	120330			13101	1095	11025	11312	13101	13101		
LQQVLQMESHIQSTSDR	17	Unmodified	_LQQVLQMESHIQSTSDR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.49692	1998.97929	1.4584	0.0014591	-0.79517	-0.00079557	0.66324	0.00066357	1000.49563533821	8.769	0.088786	8.769	8.7334	8.8221	0	135	40	1.23356193185193	0.0258073114801105	1.23356193185193	497.485305729945	0	10.4078748786257						263	11	4	NaN	NaN	NaN	1.7638E-06	1	31617	80.379	72.005	1	52571			13102	1780	11026	11313	13102	13102		
LQQVLQMESHIQSTSDR	17	Unmodified	_LQQVLQMESHIQSTSDR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.333706	1998.97929	0.78037	0.00052077	0.41343	0.0002759	1.1938	0.00079666	667.668177804249	8.769	0.19534	8.769	8.7245	8.9198	0	618	55	0.910492137470517	0.0365379208740513	0.910492137470517	550.788984319508	0	22.1030841444438						781	23	5	NaN	NaN	NaN	3.9469E-14	1	31618	200.82	172.59	1	337300			13103	1780	11026	11313	13103	13103		
LQQYYIFIPSK	11	Unmodified	_LQQYYIFIPSK_			0	0	0	Q9H0S4	Q9H0S4	Q9H0S4	DDX47	Probable ATP-dependent RNA helicase DDX47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.384645	1398.75474	1.4863	0.001041	0.277	0.00019401	1.7633	0.001235	700.38472990407	13.815	0.13298	13.815	13.762	13.895	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	410.802224683852	0	8.96247888089943						192	16	2	NaN	NaN	NaN	2.6113E-05	1	15420	81.335	66.187	1	101880			13104	2849	11027	11314	13104	13104		
LQSAMTEGGVVLR	13	Unmodified	_LQSAMTEGGVVLR_			0	0	0	Q9H0U6	Q9H0U6	Q9H0U6	MRPL18	39S ribosomal protein L18, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.866294	1359.71803	1.2074	0.00082205	-3.7116	-0.0025271	-2.5043	-0.0017051	680.863795046364	8.9819	0.13302	8.9819	8.9198	9.0528	0	504	37	0.987393073566096	0.0242207100839708	0.987393073566096	399.495844167202	0	9.79961606007481						214	15	3	NaN	NaN	NaN	0.0059653	1	14196	44.598	35.083	1	70879			13105	2851	11028	11315	13105	13105		
LQSHLLTEPVK	11	Unmodified	_LQSHLLTEPVK_			0	0	0	O95361	O95361	O95361	TRIM16	Tripartite motif-containing protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.86662	1263.71869	2.0477	0.0012959	-0.34424	-0.00021786	1.7035	0.0010781	632.866354819953	5.9929	0.12408	5.9929	5.9663	6.0904	0	507	25	0.985374541851584	0.0161493714671825	0.985374541851584	398.983777771899	0	6.53897270829697						173	15	3	NaN	NaN	NaN	0.0005389	1	11338	63.212	46.56	1	42557			13106	425	11029	11316	13106	13106		
LQSIGTENTEENR	13	Unmodified	_LQSIGTENTEENR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.857709	1489.70086	2.6663	0.0019887	-1.9355	-0.0014436	0.7308	0.00054507	745.856305898698	4.1839	0.22168	4.1839	4.1396	4.3613	0	483	127	1.00151498427745	0.084655552403908	1.00151498427745	404.853495671361	0	34.2212516604918						1695	26	4	NaN	NaN	NaN	6.9401E-33	1	18208	193.94	169.82	1	650210			13107	504	11030	11317	13107	13107		
LQSLPFALTHLNLK	14	Unmodified	_LQSLPFALTHLNLK_			0	0	0	Q14160	Q14160	Q14160	SCRIB	Protein scribble homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.315364	1593.92426	0.32978	0.00017554	-0.95167	-0.00050659	-0.62189	-0.00033104	532.314975976427	15.455	0.10654	15.455	15.411	15.517	0	639	28	0.896281965493857	0.0182803602689122	0.896281965493857	543.140810721589	0	11.0777747170989						299	13	4	NaN	NaN	NaN	0.0036141	1	21407	60	60	1	101840			13108	1730	11031	11318	13108	13108		
LQSNPSLEGVSHVIVDEVHER	21	Unmodified	_LQSNPSLEGVSHVIVDEVHER_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	586.802748	2343.18189	0.16959	9.9518E-05	1.0064	0.00059053	1.176	0.00069005	587.053678312801	12.626	0.27489	12.626	12.502	12.777	0	651	25	0.888155670855968	0.0162548450794181	0.888155670855968	715.641829753584	0	13.0975317241231						382	32	4	NaN	NaN	NaN	0.0092426	1	35986	53.782	49.184	1	80166			13109	2114	11032	11319	13109	13109		
LQSQLLSLEK	10	Unmodified	_LQSQLLSLEK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.840071	1157.66559	0.75642	0.00043861	-1.4005	-0.00081206	-0.64407	-0.00037346	579.839199629222	10.028	0.1064	10.028	9.9928	10.099	0	603	31	0.920633820089869	0.0202735302015807	0.920633820089869	373.138785394301	0	8.2169916746422						226	13	3	NaN	NaN	NaN	5.738E-05	1	8302	124.81	0	1	108670			13110	1167	11033	11320	13110	13110		
LQSQMSGQQLVEQSHVVLSTLWEPHITQR	29	Unmodified	_LQSQMSGQQLVEQSHVVLSTLWEPHITQR_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	840.684578	3358.70921	1.0769	0.00090536	0.42883	0.00036051	1.5058	0.0012659	840.934067242643	17.14	0.14187	17.14	17.078	17.22	0	375	49	1.07392668217569	0.0321164047126832	1.07392668217569	863.786596387499	0	25.8320427040417						514	17	5	NaN	NaN	NaN	3.2659E-05	1	38584	65.574	62.364	1	137980			13111	1623	11034	11321	13111	13111		
LQSSDGEIFEVDVEIAK	17	Unmodified	_LQSSDGEIFEVDVEIAK_			0	0	0	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.970196	1877.92584	0.92478	0.00086926	1.2303	0.0011565	2.1551	0.0020257	939.971173095141	14.861	0.097519	14.861	14.817	14.914	0	258	46	1.15196821829984	0.029933448623392	1.15196821829984	464.785696434474	0	12.0772765637946						350	12	4	NaN	NaN	NaN	6.5888E-05	1	29098	102.26	95.404	1	110910			13112	1431	11035	11322	13112	13112		
LQTEAQEDDWYDCHR	15	Unmodified	_LQTEAQEDDWYDCHR_			0	0	0	Q9UHI6	Q9UHI6	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.939244	1964.7959	0.36959	0.00024243	4.2758	0.0028047	4.6454	0.0030471	656.276527763036	6.8707	0.062108	6.8707	6.8353	6.8974	0	669	25	0.875957769340875	0.0162683841309829	0.875957769340875	529.961414570475	0	9.84250173763405						149	8	4	NaN	NaN	NaN	0.00022988	1	31007	28.228	28.019	1	27106			13113	3218	11036	11323	13113	13113		
LQTLVSEQPNK	11	Unmodified	_LQTLVSEQPNK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.845884	1255.67722	2.1778	0.0013695	-0.75684	-0.00047593	1.4209	0.00089354	628.845666327928	5.6913	0.14196	5.6913	5.6381	5.78	0	549	40	0.957085760909907	0.0262917911447993	0.957085760909907	387.556315479093	0	10.6464332869575						303	17	3	NaN	NaN	NaN	2.3019E-11	1	11089	104.39	60.66	1	106050			13114	2167	11037	11324	13114	13114		
LQTNIEALK	9	Unmodified	_LQTNIEALK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.300581	1028.58661	0.7636	0.00039348	0.16459	8.4813E-05	0.92819	0.0004783	515.300625919542	7.5003	0.13301	7.5003	7.456	7.589	0	642	34	0.894250814548268	0.0223457630982734	0.894250814548268	362.980534288783	0	9.07024840966926						295	16	3	NaN	NaN	NaN	0.010996	1	4966	58.426	22.793	1	99518			13115	3136	11038	11325	13115	13115		
LQTPNTFPK	9	Unmodified	_LQTPNTFPK_			0	0	0	Q14978	Q14978	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.287474	1044.5604	0.89509	0.00046839	-1.0218	-0.00053467	-0.12666	-6.6278E-05	523.287331258456	6.5693	0.26603	6.5693	6.4274	6.6934	0	678	61	0.869855008346864	0.0406766221672067	0.869855008346864	353.006859429659	0	16.5074943590215						718	31	3	NaN	NaN	NaN	0.0012849	1	5345	102.46	37.152	1	425760			13116	1781	11039	11326	13116	13116		
LQTQGLGTALK	11	Unmodified	_LQTQGLGTALK_			0	0	0	Q96HE7;Q86YB8	Q96HE7	Q96HE7	ERO1L;ERO1LB	ERO1-like protein alpha;ERO1-like protein beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.332413	1128.65027	1.3653	0.00077187	-2.5118	-0.00142	-1.1465	-0.00064815	565.332096871151	7.2432	0.097548	7.2432	7.2077	7.3053	0	612	31	0.914549654013882	0.0202819613609688	0.914549654013882	370.785002114536	0	8.22289643116483						220	12	4	NaN	NaN	NaN	0.0095472	1	7501	65.933	20.443	1	96507			13117	2549	11040	11327	13117	13117		
LQTQVFK	7	Unmodified	_LQTQVFK_			0	0	0	P46781	P46781	P46781	RPS9	40S ribosomal protein S9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.252903	862.491253	-1.6753	-0.00072416	-0.29567	-0.00012781	-1.971	-0.00085197	432.252806350895	5.5139	0.25718	5.5139	5.4608	5.7179	0	786	28	0.796423123669906	0.0184026828244152	0.796423123669906	324.092562916376	0	7.48869848682835						369	30	3	NaN	NaN	NaN	0.022472	1	1758	60.709	37.399	1	220160			13118	1089	11041	11328	13118	13118		
LQTTDNLLPMSPEEFDEVSR	20	Unmodified	_LQTTDNLLPMSPEEFDEVSR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.05192	2320.08929	0.24246	0.00028151	0.11022	0.00012797	0.35268	0.00040948	1161.55426261447	16.191	0.10642	16.191	16.129	16.236	0	87	25	1.26527909472281	0.0158412070176821	1.26527909472281	509.789225467501	0	6.38252594996334						167	13	3	NaN	NaN	NaN	0.000755	1	35814	60.324	59.381	1	28809			13119	1044	11042	11329	13119	13119		
LQVAGEITTGPR	12	Unmodified	_LQVAGEITTGPR_			0	0	0	Q9UJS0;O75746	Q9UJS0;O75746	Q9UJS0	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.346052	1240.67755	1.2276	0.00076278	0.75572	0.00046957	1.9833	0.0012323	621.346666477758	7.5447	0.14187	7.5447	7.5003	7.6422	0	516	34	0.979317271586824	0.0222161383936255	0.979317271586824	396.610740076208	0	8.99724669989149						324	17	3	NaN	NaN	NaN	2.1727E-07	1	10649	151.22	112.21	1	104130			13120	3248;356	11043	11330	13120	13120		
LQVCGHEMLAHR	12	Unmodified	_LQVCGHEMLAHR_			0	0	0	Q9Y6Y0	Q9Y6Y0	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.239584	1449.69692	-0.86348	-0.00041813	-0.43497	-0.00021063	-1.2985	-0.00062876	484.239556809656	5.1859	0.062061	5.1859	5.1681	5.2302	0	828	16	0.767766820543916	0.0102450884616601	0.767766820543916	465.659488663011	0	6.21376507385952						64	8	2	NaN	NaN	NaN	0.042373	1	16970	27.589	24.486	1	15443			13121	3477	11044	11331	13121	13121		
LQVEELLK	8	Unmodified	_LQVEELLK_			0	0	0	Q9H6R4	Q9H6R4	Q9H6R4	NOL6	Nucleolar protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.292225	970.569897	-0.76089	-0.00037001	-1.2131	-0.00058991	-1.974	-0.00095992	486.291773543165	11.687	0.133	11.687	11.633	11.766	0	705	49	0.851531465363931	0.0326046192681035	0.851531465363931	345.913254844681	0	13.2448070714347						299	16	3	NaN	NaN	NaN	0.014287	1	3653	49.325	12.756	1	83024			13122	2906	11045	11332	13122	13122		
LQVEEVHQLSR	11	Unmodified	_LQVEEVHQLSR_			0	0	0	Q9NR28	Q9NR28	Q9NR28	DIABLO	Diablo homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.577247	1336.70991	-0.67337	-0.00030071	-0.74773	-0.00033392	-1.4211	-0.00063463	446.576906824491	5.9663	0.070992	5.9663	5.9485	6.0195	0	807	28	0.782101955086014	0.0184231892400387	0.782101955086014	474.7321836201	0	11.1827886380977						163	9	3	NaN	NaN	NaN	0.004007	1	13501	57.032	31.779	1	39922			13123	3010	11046	11333	13123	13123		
LQVEEVHQLSR	11	Unmodified	_LQVEEVHQLSR_			0	0	0	Q9NR28	Q9NR28	Q9NR28	DIABLO	Diablo homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.362233	1336.70991	2.3717	0.0015875	-3.6156	-0.0024201	-1.2439	-0.00083261	669.361778655525	5.9751	0.16854	5.9751	5.9396	6.1081	0	477	34	1.0055473068722	0.0221731807232346	1.0055473068722	406.911450076007	0	8.972746542332						362	20	3	NaN	NaN	NaN	0.00155	1	13502	68.548	51.078	1	137820			13124	3010	11046	11333	13124	13124		
LQVELDNVTGLLSQSDSK	18	Unmodified	_LQVELDNVTGLLSQSDSK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.507477	1945.0004	2.0578	0.0020033	-0.95417	-0.00092889	1.1037	0.0010744	973.506445110527	16.156	0.29262	16.156	16.067	16.36	0	219	79	1.17788915118882	0.051781389209637	1.17788915118882	475.123840469897	0	20.8870015326302						1144	34	5	NaN	NaN	NaN	3.1926E-19	1	30630	191.49	138.44	1	536440			13125	972	11047	11334	13125	13125		
LQVEPAVDTSGVQCYGPGIEGQGVFR	26	Unmodified	_LQVEPAVDTSGVQCYGPGIEGQGVFR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	921.785069	2762.33338	1.7419	0.0016057	-2.2595	-0.0020827	-0.51754	-0.00047706	922.118836220445	14.382	0.15957	14.382	14.32	14.48	0	447	64	1.02569221487577	0.0422955594974614	1.02569221487577	619.294694439076	0	25.537305650977						698	19	5	NaN	NaN	NaN	1.4429E-06	1	37793	89.684	82.836	1	173580			13126	792	11048	11335	13126	13126		
LQVGEVVTTIPTIGFNVETVTYK	23	Unmodified	_LQVGEVVTTIPTIGFNVETVTYK_			0	0	0	P40616	P40616	P40616	ARL1	ADP-ribosylation factor-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.791379	2507.35231	1.1527	0.00096461	0.96686	0.00080906	2.1196	0.0017737	837.126756578194	18.94	0.062065	18.94	18.896	18.958	0	372	19	1.07593298845566	0.0120370084609909	1.07593298845566	649.959942553416	0	7.27143178224344						138	8	4	NaN	NaN	NaN	2.5302E-06	1	36866	73.345	71.374	1	30506			13127	1019	11049	11336	13127	13127		
LQVLLTYR	8	Unmodified	_LQVLLTYR_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.30821	1004.60187	0.49567	0.00024947	-0.010277	-5.1723E-06	0.48539	0.0002443	503.308106461779	11.004	0.15962	11.004	10.95	11.11	0	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	361.445180287913	0	9.89999557102732						286	19	3	NaN	NaN	NaN	0.00025041	1	4393	117.18	76.974	1	74701			13128	2892	11050	11337	13128	13128		
LQVLVGDVLK	10	Unmodified	_LQVLVGDVLK_			0	0	0	Q9UNQ2	Q9UNQ2	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.342249	1082.66995	0.28683	0.00015556	-2.9634	-0.0016072	-2.6766	-0.0014516	542.340804664567	13.238	0.22169	13.238	13.114	13.336	0	639	31	0.896281965493857	0.0203101032426732	0.896281965493857	363.564914454092	0	8.23852451823865						324	26	4	NaN	NaN	NaN	0.00094314	1	6286	92.732	43.407	1	128860			13129	3304	11051	11338	13129	13129		
LQVSQQEDITK	11	Unmodified	_LQVSQQEDITK_			0	0	0	P29218	P29218	P29218	IMPA1	Inositol monophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.840799	1287.66705	1.5624	0.0010075	-2.6323	-0.0016974	-1.0699	-0.00068991	644.840353791745	5.2745	0.20399	5.2745	5.2302	5.4342	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.268927715913	0	8.9923890372213						364	24	3	NaN	NaN	NaN	0.0020653	1	11998	63.212	32.619	1	132690			13130	884	11052	11339	13130	13130		
LQVTMPGIK	9	Unmodified	_LQVTMPGIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.788795	985.563038	-0.44744	-0.00022094	-3.0313	-0.0014968	-3.4787	-0.0017178	493.788055554222	10.312	0.21281	10.312	10.188	10.401	0	720	43	0.841341816837976	0.028536968892656	0.841341816837976	341.701333566071	0	11.5899627611543						429	25	3	NaN	NaN	NaN	0.0047318	1	3972	56.014	28.31	1	121340			13131	1584	11053	11340	13131	13131		
LQVTNVLSQPLTQATVK	17	Unmodified	_LQVTNVLSQPLTQATVK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.530558	1839.04656	2.6408	0.0024309	0.10476	9.6439E-05	2.7455	0.0025274	921.03218843262	13.903	0.13301	13.903	13.85	13.983	1.7764E-15	234	49	1.16792504164217	0.0318961142140304	1.16792504164217	471.296863320281	0	12.871150155357						602	16	5	NaN	NaN	NaN	1.7418E-19	1	28208	185.57	136.75	1	308830			13132	519	11054	11341	13132	13132		
LQVVLEHMPVGPDAILR	17	Unmodified	_LQVVLEHMPVGPDAILR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.688873	1886.04479	-0.61264	-0.00038577	-1.1779	-0.00074171	-1.7905	-0.0011275	629.6879694386	15.154	0.15961	15.154	15.065	15.225	0	714	40	0.845418525735192	0.0264967721372047	0.845418525735192	511.634569544912	0	16.0354477623485						549	19	4	NaN	NaN	NaN	4.0261E-07	1	29293	98.895	90.089	1	127090			13133	1081	11055	11342	13133	13133		
LQWDLGLGHLPR	12	Unmodified	_LQWDLGLGHLPR_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.929733	1403.76737	-1.4459	-0.00067803	-1.1666	-0.00054704	-2.6125	-0.0012251	468.92916796516	14.382	0.13299	14.382	14.329	14.462	0	768	49	0.808687310729125	0.0326772198028354	0.808687310729125	490.629696594631	0	19.8252330965427						445	16	4	NaN	NaN	NaN	0.00080012	1	15588	65.404	50.641	1	191590			13134	1968	11056	11343	13134	13134		
LQWFCDR	7	Unmodified	_LQWFCDR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.737094	1023.45964	-0.13918	-7.1362E-05	-0.45203	-0.00023177	-0.59121	-0.00030314	512.736905211993	10.268	0.19506	10.268	10.214	10.41	0	708	43	0.849494101904619	0.0285250764845424	0.849494101904619	344.836389715873	0	11.5792262350554						584	23	5	NaN	NaN	NaN	0.0022687	1	4820	113.1	77.469	1	261270			13135	1055	11057	11344	13135	13135		
LQWQTTLGHAVLK	13	Unmodified	_LQWQTTLGHAVLK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.952426	1493.83545	-0.9857	-0.00049182	-0.054707	-2.7296E-05	-1.0404	-0.00051911	498.952244746149	11.208	0.13301	11.208	11.172	11.305	0	744	28	0.82502364452135	0.0183694328474171	0.82502364452135	500.246822474457	0	11.1381661284502						316	16	4	NaN	NaN	NaN	0.024674	1	18360	44.57	28.691	1	143930			13136	1696	11058	11345	13136	13136		
LQYAVSGLEPLAWSEDHR	18	Unmodified	_LQYAVSGLEPLAWSEDHR_			0	0	0	Q9UKN8	Q9UKN8	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	691.012961	2070.01705	0.99389	0.00068679	0.068803	4.7544E-05	1.0627	0.00073433	691.347202967618	14.302	0.097541	14.302	14.249	14.347	0	498	37	0.991429299781895	0.0242207100839708	0.991429299781895	599.608924609098	0	14.6485018446734						270	12	4	NaN	NaN	NaN	0.028078	1	32880	29.115	25.043	1	71618			13137	3267	11059	11346	13137	13137		
LQYEGIFIK	9	Unmodified	_LQYEGIFIK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.813325	1109.6121	0.2914	0.00016196	0.16406	9.1188E-05	0.45546	0.00025315	555.8132710784	12.361	0.23053	12.361	12.29	12.52	0	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	368.39351238277	0	9.87636217929446						488	27	4	NaN	NaN	NaN	0.0065422	1	6989	77.072	56.413	1	222050			13138	1852	11060	11347	13138	13138		
LQYFMEQFYGIIR	13	Unmodified	_LQYFMEQFYGIIR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.431801	1706.84905	1.0062	0.00085971	0.64476	0.0005509	1.6509	0.0014106	854.933728821241	18.781	0.070939	18.781	18.745	18.816	0	315	25	1.11400032671325	0.0160073906404907	1.11400032671325	449.796966997649	0	6.46326180251884						101	9	2	NaN	NaN	NaN	5.4578E-05	1	24679	81.335	77.353	1	29758			13139	1465	11061	11348	13139	13139		
LQYLIDLGR	9	Unmodified	_LQYLIDLGR_			0	0	0	Q9P015	Q9P015	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.816399	1089.61824	0.62679	0.00034211	0.29841	0.00016287	0.92519	0.00050499	545.816432656058	13.575	0.23941	13.575	13.504	13.744	1.7764E-15	621	43	0.908462957275599	0.028418378530508	0.908462957275599	368.476430190063	0	11.5266149146187						298	28	2	NaN	NaN	NaN	0.00020595	1	6461	67.464	49.061	1	108040			13140	3140	11062	11349	13140	13140		
LRAPDLEYLFEK	12	Unmodified	_LRAPDLEYLFEK_			0	0	1	Q9NX18	Q9NX18	Q9NX18	SDHAF2	Succinate dehydrogenase assembly factor 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.604803	1492.79258	-2.4333	-0.0012133	0.20818	0.0001038	-2.2252	-0.0011095	498.604796899041	14.684	0.079791	14.684	14.648	14.728	0	777	25	0.802556497112065	0.0163522499663766	0.802556497112065	486.627153411872	0	9.91512607729356						150	10	3	NaN	NaN	NaN	0.00048943	1	18334	66.664	63.159	1	39472			13141	3091	11063	11350	13141	13141		
LRDLEDSLAR	10	Unmodified	_LRDLEDSLAR_			0	0	1	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.322576	1186.6306	1.5981	0.00094981	1.3892	0.00082562	2.9873	0.0017754	594.32368819816	6.5072	0.26603	6.5072	6.4185	6.6845	0	561	43	0.948993180460448	0.028335804573887	0.948993180460448	384.522452538338	0	11.4813818410281						630	31	5	NaN	NaN	NaN	5.7753E-06	1	9069	130.79	94.548	1	410090			13142	493	11064	11351	13142	13142		
LRDLHPDLEGQLK	13	Unmodified	_LRDLHPDLEGQLK_			0	0	1	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.950973	1532.83109	-0.54713	-0.00028011	0.87578	0.00044836	0.32865	0.00016825	511.951752987459	6.9239	0.044328	6.9239	6.9062	6.9505	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	500.130136193478	0	11.1340198572511						103	6	3	NaN	NaN	NaN	0.056966	1	19525	36.952	31.801	1	27925			13143	3121	11065	11352	13143	13143		
LRDTEEMLSK	10	Unmodified	_LRDTEEMLSK_			0	0	1	Q9H444	Q9H444	Q9H444	CHMP4B	Charged multivesicular body protein 4b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	407.876306	1220.60709	-0.66816	-0.00027253	-0.62274	-0.000254	-1.2909	-0.00052653	407.876184955949	4.3081	0.079741	4.3081	4.2904	4.3701	0	906	16	0.714399420407021	0.0102808651988332	0.714399420407021	434.058217707796	0	6.24649726361366						53	10	2	NaN	NaN	NaN	0.047007	1	10030	36.514	30.648	1	9114.8			13144	2889	11066	11353	13144	13144		
LREEIEELK	9	Unmodified	_LREEIEELK_			0	0	1	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.821878	1157.6292	1.7785	0.0010312	0.61236	0.00035506	2.3908	0.0013863	579.822181232723	5.6736	0.14194	5.6736	5.6292	5.7711	0	561	40	0.948993180460448	0.0263136394103891	0.948993180460448	384.633149033601	0	10.6650903266153						255	17	3	NaN	NaN	NaN	0.020164	1	8297	90.263	43.816	1	110210			13145	280	11067	11354	13145	13145		
LRPLYDIPYMFEAR	14	Unmodified	_LRPLYDIPYMFEAR_			0	0	1	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.311514	1782.91271	-1.4629	-0.00087089	-0.55347	-0.00032948	-2.0164	-0.0012004	595.645692551959	16.36	0.097522	16.36	16.315	16.413	0	708	82	0.849494101904619	0.0550547420460513	0.849494101904619	514.317905312121	0	33.3323557434229						549	12	3	NaN	NaN	NaN	0.0034457	1	26764	51.569	48.484	1	142810			13146	2108	11068	11355	13146	13146		
LSAASTWLEDEGVGATTVMLK	21	Unmodified	_LSAASTWLEDEGVGATTVMLK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.036555	2178.08784	-0.12069	-8.7748E-05	0.026411	1.9202E-05	-0.094281	-6.8546E-05	727.370664302965	17.087	0.10639	17.087	17.051	17.158	0	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	605.508561922232	0	12.1912484174065						267	13	4	NaN	NaN	NaN	1.3824E-06	1	34421	146.37	140.16	1	61305			13147	3410	11069	11356	13147	13147		
LSAASTWLEDEGVGATTVMLK	21	Unmodified	_LSAASTWLEDEGVGATTVMLK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.05119	2178.08784	-0.023649	-2.5779E-05	0.12346	0.00013458	0.099816	0.0001088	1090.55270363796	17.087	0.17732	17.087	17.016	17.193	0	93	73	1.26131825079847	0.047556209910147	1.26131825079847	508.390620894077	0	19.1681449691887						1037	21	6	NaN	NaN	NaN	0.00023805	1	34422	65.212	54.727	1	313460			13148	3410	11069	11356	13148	13148		
LSAAVTEAFVR	11	Unmodified	_LSAAVTEAFVR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.324588	1162.63462	0.67803	0.00039483	-0.33072	-0.00019259	0.34731	0.00020225	582.32436758261	10.667	0.13299	10.667	10.622	10.755	0	609	37	0.916577990479294	0.0243383549190614	0.916577990479294	371.476234273099	0	9.86399469292013						240	16	2	NaN	NaN	NaN	4.0893E-08	1	8421	162.49	136.04	1	101820			13149	858	11070	11357	13149	13149		
LSAEERDQLLPNLR	14	Unmodified	_LSAEERDQLLPNLR_			0	0	1	P61457	P61457	P61457	PCBD1	Pterin-4-alpha-carbinolamine dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.968804	1652.88458	-0.029129	-1.6078E-05	-0.71731	-0.00039593	-0.74644	-0.00041201	551.968578431541	9.8864	0.10641	9.8864	9.8243	9.9307	0	702	40	0.853568545818287	0.0264783729728815	0.853568545818287	517.097988111867	0	16.0407895298282						179	13	3	NaN	NaN	NaN	0.05858	1	23143	19.557	13.529	1	40157			13150	1345	11071	11358	13150	13150		
LSAETLQQVNR	11	Unmodified	_LSAETLQQVNR_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.841133	1257.66771	1.5723	0.00099031	-2.2733	-0.0014318	-0.70101	-0.00044153	629.841317196481	6.7111	0.11524	6.7111	6.658	6.7732	0	576	28	0.938871150116794	0.0182272273449463	0.938871150116794	380.174066610342	0	7.38069237924441						255	14	4	NaN	NaN	NaN	9.6677E-06	1	11152	135.63	99.423	1	96891			13151	3447	11072	11359	13151	13151		
LSAIPVSAFCNSETK	15	Unmodified	_LSAIPVSAFCNSETK_			0	0	0	Q6YP21	Q6YP21	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.40598	1622.79741	1.5148	0.0012306	-0.36011	-0.00029255	1.1546	0.00093804	812.406798940072	11.607	0.15081	11.607	11.553	11.704	0	378	37	1.07192009927972	0.0240906221251305	1.07192009927972	432.986863222816	0	9.73106383027562						300	18	4	NaN	NaN	NaN	0.0042484	1	22271	43.613	37.236	1	63543			13152	2098	11073	11360	13152	13152		
LSAIYGGTYMLNK	13	Unmodified	_LSAIYGGTYMLNK_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.871045	1429.72754	1.8898	0.0013529	0.22881	0.0001638	2.1186	0.0015167	715.871798568666	11.429	0.33702	11.429	11.367	11.704	0	453	67	1.02166545906632	0.0442821075233106	1.02166545906632	413.15855174239	0	17.9075559911282						1187	39	5	NaN	NaN	NaN	2.974E-11	1	16386	167.76	115.17	1	591590			13153	1161;920	11074	11361	13153	13153		
LSALGNVTTCNDYVALVHPDLDR	23	Unmodified	_LSALGNVTTCNDYVALVHPDLDR_			0	0	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.423472	2542.24859	2.1533	0.0018269	-0.069951	-5.9348E-05	2.0833	0.0017675	848.423550052645	14.551	0.097523	14.551	14.515	14.613	0	345	31	1.09397730668811	0.020036815138085	1.09397730668811	660.810333941016	0	12.1031162361097						300	12	5	NaN	NaN	NaN	1.0377E-09	1	36999	84.071	73.819	1	78051			13154	1286	11075	11362	13154	13154		
LSALGNVTTCNDYVALVHPDLDRETEEILADVLK	34	Unmodified	_LSALGNVTTCNDYVALVHPDLDRETEEILADVLK_			0	0	1	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	946.733194	3782.90367	1.3439	0.0012723	-0.28697	-0.00027169	1.0569	0.0010006	947.234405241916	19.969	0.044375	19.969	19.96	20.004	0	303	52	1.12200181823275	0.0340133727588399	1.12200181823275	902.036976444567	0	27.3451606080207						215	6	5	NaN	NaN	NaN	3.6412E-07	1	38732	50.486	49.167	1	48030			13155	1286	11076	11363	13155	13155		
LSALHLEVR	9	Unmodified	_LSALHLEVR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.308741	1036.60293	1.2914	0.00067064	0.84946	0.00044113	2.1409	0.0011118	519.309236443225	7.7931	0.10643	7.7931	7.7576	7.864	0	621	28	0.908462957275599	0.0182651557513902	0.908462957275599	368.711646161239	0	7.41315382267533						194	13	3	NaN	NaN	NaN	0.00010345	1	5164	125.98	67.695	1	50724			13156	3268	11077	11364	13156	13156		
LSALLQETK	9	Unmodified	_LSALLQETK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.795132	1001.57571	0.0072563	3.6412E-06	0.93957	0.00047147	0.94682	0.00047511	501.795804855034	7.0126	0.14196	7.0126	6.9417	7.0836	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	352.377635122481	0	8.26293757920462						213	17	3	NaN	NaN	NaN	0.0013532	1	4342	86.205	65.972	1	74618			13157	280	11078	11365	13157	13157		
LSAMLVPVTPEVK	13	Unmodified	_LSAMLVPVTPEVK_			0	0	0	P82970	P82970	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.399438	1382.78432	0.83082	0.00057526	-0.66307	-0.00045911	0.16775	0.00011615	692.39882023371	13.212	0.1153	13.212	13.141	13.256	0	486	52	0.999498404980629	0.0342771221758933	0.999498404980629	404.325713066431	0	13.8660770208051						327	14	3	NaN	NaN	NaN	0.0033086	1	14925	65.879	50	1	86964			13158	1479	11079	11366	13158	13158		
LSAQAQVAEDILDK	14	Unmodified	_LSAQAQVAEDILDK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.898845	1499.78314	1.0183	0.00076465	-1.2836	-0.00096387	-0.26532	-0.00019923	750.898541319393	12.352	0.079796	12.352	12.316	12.396	0	435	31	1.03374239103424	0.0201171086492766	1.03374239103424	417.85527745098	0	8.13165841805608						181	10	3	NaN	NaN	NaN	0.0045323	1	18523	66.619	51.003	1	60297			13159	1784	11080	11367	13159	13159		
LSASETSLHR	10	Unmodified	_LSASETSLHR_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	367.528005	1099.56219	-0.13229	-4.8621E-05	1.6026	0.000589	1.4703	0.00054038	367.528475138367	3.3149	0.053187	3.3149	3.2971	3.3503	0	894	22	0.722622390967862	0.0143871873657558	0.722622390967862	439.593423997467	0	8.7521685389998						59	7	2	NaN	NaN	NaN	0.07146	1	6700	24.121	14.042	1	12470			13160	1810	11081	11368	13160	13160		
LSASSLTMESFAFLWAGGR	19	Unmodified	_LSASSLTMESFAFLWAGGR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.00385	2029.99315	0.84647	0.00086001	0.95832	0.00097365	1.8048	0.0018337	1016.50716229173	20.049	0.026601	20.049	20.049	20.075	0	195	28	1.19381749893585	0.0179058640948209	1.19381749893585	481.405969720455	0	7.22052564645236						79	4	4	NaN	NaN	NaN	0.060423	1	32157	19.637	18.366	1	16941			13161	1509	11082	11369	13161	13161		
LSAVLEDTENWLYEDGEDQPK	21	Unmodified	_LSAVLEDTENWLYEDGEDQPK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1226.06354	2450.11253	0.14965	0.00018348	1.5773	0.0019338	1.7269	0.0021173	1226.56648195376	16.431	0.1064	16.431	16.386	16.493	0	66	40	1.27913350869533	0.0257261069079902	1.27913350869533	515.208358230911	0	10.3619404961546						302	13	4	NaN	NaN	NaN	0.037607	1	36579	33.456	33.151	1	50246			13162	450	11083	11370	13162	13162		
LSCFAQTVSPAEK	13	Unmodified	_LSCFAQTVSPAEK_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.355759	1436.69697	2.4533	0.0017648	-0.84254	-0.00060609	1.6107	0.0011587	719.35545673261	7.2964	0.3458	7.2964	7.128	7.4738	0	480	91	1.00353128488872	0.0604431310021558	1.00353128488872	405.806284641786	0	24.4418911432557						991	40	5	NaN	NaN	NaN	1.2751E-07	1	16581	153.25	132.16	1	677580			13163	1898	11084	11371	13163	13163		
LSCQNLGAVLDDVPVQGFFK	20	Unmodified	_LSCQNLGAVLDDVPVQGFFK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1104.0619	2206.10924	-0.10072	-0.0001112	1.1035	0.0012183	1.0028	0.0011071	1104.56480416323	19.295	0.070949	19.295	19.259	19.33	0	93	55	1.26131825079847	0.0356671468883052	1.26131825079847	508.349692139295	0	14.3749471068693						327	9	4	NaN	NaN	NaN	1.0962E-10	1	34747	116.36	107.61	1	66141			13164	1766	11085	11372	13164	13164		
LSCQPMLSLDDFQLQPPVTFR	21	Unmodified	_LSCQPMLSLDDFQLQPPVTFR_			0	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	831.41526	2491.22395	1.3063	0.0010861	-1.4889	-0.0012379	-0.18257	-0.00015179	831.748354731994	19.446	0.07087	19.446	19.401	19.472	0	465	46	1.01360860968299	0.0302236288211217	1.01360860968299	612.332288074649	0	18.2584319165801						294	9	4	NaN	NaN	NaN	0.0010047	1	36784	62.711	61.695	1	54897			13165	346	11086	11373	13165	13165		
LSCVPVLIFANK	12	Unmodified	_LSCVPVLIFANK_			0	0	0	P36405	P36405	P36405	ARL3	ADP-ribosylation factor-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.886498	1359.75844	1.1621	0.00079123	-2.0721	-0.0014108	-0.90999	-0.0006196	680.885427116753	15.464	0.13314	15.464	15.411	15.544	0	516	34	0.979317271586824	0.0222161383936255	0.979317271586824	396.22827739475	0	8.98857040661221						438	16	4	NaN	NaN	NaN	0.072487	1	14208	23.053	12.351	1	189530			13166	983	11087	11374	13166	13166		
LSDADLAGPLQK	12	Unmodified	_LSDADLAGPLQK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.33261	1226.65067	1.2038	0.00073956	-2.509	-0.0015413	-1.3051	-0.00080178	614.331833925621	8.9908	0.16849	8.9908	8.9109	9.0794	0	570	61	0.942920803299286	0.0404685229802539	0.942920803299286	381.918709879617	0	16.3912876174464						370	20	2	NaN	NaN	NaN	0.0046794	1	10201	51.872	34.477	1	120180			13167	1794	11088	11375	13167	13167		
LSDALAVEDDQVAPVPLNVVETSSSVR	27	Unmodified	_LSDALAVEDDQVAPVPLNVVETSSSVR_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	937.485454	2809.43453	0.65089	0.0006102	0.78129	0.00073245	1.4322	0.0013426	937.820934952984	16.386	0.12413	16.386	16.342	16.466	0	402	31	1.05585747106793	0.0200921384005985	1.05585747106793	637.454391898982	0	12.1302564191258						211	15	3	NaN	NaN	NaN	0.031187	1	37922	16.598	16.121	1	41308			13168	2167	11089	11376	13168	13168		
LSDETLIDIMTR	12	Unmodified	_LSDETLIDIMTR_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.863417	1405.71228	0.67323	0.00047386	0.016357	1.1513E-05	0.68959	0.00048538	703.863903734995	16.608	0.20394	16.608	16.546	16.75	0	477	34	1.0055473068722	0.0221762449945386	1.0055473068722	406.706976409599	0	8.96947710784696						387	24	4	NaN	NaN	NaN	0.00025419	1	15644	90.142	67.089	1	82598			13169	765	11090	11377	13169	13169		
LSDETLLEISK	11	Unmodified	_LSDETLLEISK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.340101	1246.66565	0.61416	0.00038344	-3.2683	-0.0020405	-2.6542	-0.0016571	624.338681721799	11.811	0.1685	11.811	11.731	11.899	0	579	55	0.936845902828289	0.0364418454762743	0.936845902828289	379.390349423808	0	14.7576932846193						340	20	3	NaN	NaN	NaN	0.0013943	1	10833	76.85	61.702	1	99576			13170	1223	11091	11378	13170	13170		
LSDFNDITNMLLLK	14	Unmodified	_LSDFNDITNMLLLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.934373	1635.85419	1.3293	0.0010886	0.71681	0.00058702	2.0461	0.0016757	818.935129154527	19.392	0.18622	19.392	19.321	19.508	0	372	49	1.07593298845566	0.0320942731309124	1.07593298845566	434.578447226717	0	12.9631487571745						595	22	5	NaN	NaN	NaN	1.8293E-11	1	22673	156.73	123.3	1	290990			13171	1465	11092	11379	13171	13171		
LSDGGLLLSYDGSSYTTYMK	20	Unmodified	_LSDGGLLLSYDGSSYTTYMK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.01428	2170.014	0.91217	0.00099063	3.7566	0.0040797	4.6688	0.0050703	1086.52061019873	15.5	0.062083	15.5	15.473	15.535	-1.7764E-15	114	49	1.24744674793813	0.0317128170336183	1.24744674793813	502.81137622299	0	12.78256182313						115	8	2	NaN	NaN	NaN	0.00092295	1	34308	39.587	38.492	1	22764			13172	1625	11093	11380	13172	13172		
LSDGIGVMLPQVLK	14	Unmodified	_LSDGIGVMLPQVLK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.423445	1468.83234	0.58525	0.00043041	-0.41394	-0.00030442	0.17132	0.00012599	735.422717524588	16.67	0.17737	16.67	16.59	16.768	0	420	43	1.04379886199097	0.0281600678501546	1.04379886199097	422.001542570168	0	11.3849444604478						484	21	4	NaN	NaN	NaN	5.8251E-06	1	17561	103.87	86.142	1	122870			13173	1218	11094	11381	13173	13173		
LSDGVAVLK	9	Unmodified	_LSDGVAVLK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.271293	900.528032	-0.46001	-0.00020759	0.77055	0.00034773	0.31054	0.00014014	451.271833612143	7.0214	0.26607	7.0214	6.9505	7.2166	0	768	82	0.808687310729125	0.055146675094496	0.808687310729125	328.865563619455	0	22.4262729810102						1038	31	5	NaN	NaN	NaN	0.006196	1	2341	77.072	34.237	1	1583400			13174	635	11095	11382	13174	13174		
LSDLDSETR	9	Unmodified	_LSDLDSETR_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.251286	1034.48802	2.6302	0.0013631	0.94992	0.0004923	3.5801	0.0018554	518.251839827419	3.9002	0.46997	3.9002	3.847	4.3169	0	657	43	0.884090832094921	0.0284617756829997	0.884090832094921	358.829512167388	0	11.551895702332						855	54	4	NaN	NaN	NaN	1.8406E-10	1	5103	150.24	96.564	1	411360			13175	3332	11096	11383	13175	13175		
LSDLDYMQFIR	11	Unmodified	_LSDLDYMQFIR_			0	0	0	P82933	P82933	P82933	MRPS9	28S ribosomal protein S9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.84757	1399.68059	0.3445	0.00024144	0.68573	0.00048059	1.0302	0.00072203	700.84776529101	15.943	0.22169	15.943	15.819	16.041	0	489	34	0.997481546940468	0.0221823754430851	0.997481546940468	403.461606308699	0	8.97233322807921						383	26	4	NaN	NaN	NaN	0.00029382	1	15440	72.365	62.277	1	125440			13176	1478	11097	11384	13176	13176		
LSDLLAPISEQIK	13	Unmodified	_LSDLLAPISEQIK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.911224	1425.8079	1.0143	0.00072411	1.4087	0.0010057	2.423	0.0017298	713.912519019348	14.817	0.23943	14.817	14.755	14.994	0	429	70	1.03776581230406	0.0462661800803514	1.03776581230406	419.680537435632	0	18.7104017987504						1051	28	5	NaN	NaN	NaN	2.9765E-05	1	16265	129.69	117.73	1	901610			13177	1516	11098	11385	13177	13177		
LSDLQTQLSHEIQSDVLTIN	20	Unmodified	_LSDLQTQLSHEIQSDVLTIN_			0	0	0	P19387	P19387	P19387	POLR2C	DNA-directed RNA polymerase II subunit RPB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.5817	2253.14886	1.0046	0.0011328	-1.1321	-0.0012765	-0.12746	-0.00014372	1128.0826159882	17.779	0.079799	17.779	17.734	17.814	0	87	58	1.26527909472281	0.0376306100611712	1.26527909472281	509.879409100653	0	15.1643011428166						405	10	4	NaN	NaN	NaN	0.016281	1	35218	31.767	28.693	1	92752			13178	766	11099	11386	13178	13178		
LSDLVNTAILIALNK	15	Unmodified	_LSDLVNTAILIALNK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.479805	1596.94506	0.88203	0.00070517	-1.696	-0.0013559	-0.814	-0.00065078	799.47848806484	19.685	0.062044	19.685	19.649	19.712	0	372	31	1.07593298845566	0.0200616822933108	1.07593298845566	434.667361852971	0	8.10474128995924						131	8	3	NaN	NaN	NaN	0.00015125	1	21490	65.879	57.914	1	27129			13179	2369	11100	11387	13179	13179		
LSDLVNTAILIALNK	15	Unmodified	_LSDLVNTAILIALNK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.322296	1596.94506	-0.97738	-0.00052126	1.1045	0.00058906	0.12714	6.7808E-05	533.322870446438	19.676	0.035478	19.676	19.667	19.703	0	663	13	0.880024865079826	0.00813306275404602	0.880024865079826	533.28042935127	0	4.92850073847069						26	5	2	NaN	NaN	NaN	0.017786	1	21491	35.33	32.85	1	4422.7			13180	2369	11100	11387	13180	13180		
LSDPELGVEEEPFHTIMK	18	Unmodified	_LSDPELGVEEEPFHTIMK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1036.00626	2069.99796	1.2876	0.001334	0.22447	0.00023256	1.5121	0.0015665	1036.50807252656	13.416	0.070951	13.416	13.38	13.451	0	153	46	1.22165005014568	0.0298021848658476	1.22165005014568	492.564752161758	0	12.016129987941						263	9	4	NaN	NaN	NaN	0.0001267	1	32879	53.051	52.176	1	46589			13181	1794	11101	11388	13181	13181		
LSDQFHDILIR	11	Unmodified	_LSDQFHDILIR_			0	0	0	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.91386	1355.71975	-0.56902	-0.00025772	-0.55259	-0.00025027	-1.1216	-0.00050799	452.913787512993	10.924	0.27491	10.924	10.862	11.137	0	810	61	0.78005493425781	0.04094328700532	0.78005493425781	473.421806324203	0	24.8488203069331						882	32	5	NaN	NaN	NaN	9.8606E-05	1	14066	111.61	83.511	1	782070			13182	319	11102	11389	13182	13182		
LSDQFHDILIR	11	Unmodified	_LSDQFHDILIR_			0	0	0	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.867151	1355.71975	1.7183	0.0011665	0.32842	0.00022295	2.0468	0.0013895	678.866995242608	10.924	0.17737	10.924	10.871	11.048	0	492	43	0.995464410099171	0.0282418742669083	0.995464410099171	402.773416445094	0	11.4269039353825						499	21	5	NaN	NaN	NaN	1.223E-07	1	14067	119.94	94.079	1	150980			13183	319	11102	11389	13183	13183		
LSDSFSLYPQFMFHLR	16	Unmodified	_LSDSFSLYPQFMFHLR_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.329344	1986.9662	-0.98607	-0.00065409	-0.19993	-0.00013262	-1.186	-0.0007867	663.663912007423	18.115	0.053178	18.115	18.089	18.142	0	630	31	0.902373728295776	0.0203072864196308	0.902373728295776	545.900609693668	0	12.2851094730305						134	7	4	NaN	NaN	NaN	0.035449	1	31384	18.811	18.689	1	19590			13184	1851	11103	11390	13184	13184		
LSDSLGQR	8	Unmodified	_LSDSLGQR_			0	0	0	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	438.232699	874.450845	-1.738	-0.00076165	3.426	0.0015014	1.688	0.00073973	438.2344525725	3.5278	0.27487	3.5278	3.4746	3.7494	-4.4409E-16	801	31	0.78619514174348	0.0204659356679318	0.78619514174348	319.861901545176	0	8.32652448745586						300	32	3	NaN	NaN	NaN	0.011627	1	1928	63.301	38.451	1	87259			13185	785	11104	11391	13185	13185		
LSDVTLVPVSCSELEK	16	Unmodified	_LSDVTLVPVSCSELEK_			0	0	0	O95865	O95865	O95865	DDAH2	N(G),N(G)-dimethylarginine dimethylaminohydrolase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.45841	1774.90227	2.239	0.0019892	-1.5605	-0.0013865	0.67841	0.00060274	888.458365338349	12.972	0.097561	12.972	12.937	13.034	0	309	34	1.11800162319566	0.0219995616552313	1.11800162319566	451.273127175221	0	8.87996115449539						161	12	3	NaN	NaN	NaN	0.020764	1	26543	18.811	16.828	1	32047			13186	460	11105	11392	13186	13186		
LSEDIDLLK	9	Unmodified	_LSEDIDLLK_			0	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.292422	1044.57029	0.28142	0.00014726	-0.37133	-0.00019431	-0.089913	-4.7051E-05	523.292112425355	11.35	0.097591	11.35	11.314	11.412	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	354.658019708815	0	8.25488886128397						194	12	3	NaN	NaN	NaN	0.011627	1	5350	54.436	32.05	1	51706			13187	193	11106	11393	13187	13187		
LSEDYGVLK	9	Unmodified	_LSEDYGVLK_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.27149	1022.52843	0.58779	0.00030111	-0.30941	-0.0001585	0.27839	0.00014261	512.271510020889	7.5092	0.38139	7.5092	7.3142	7.6956	0	687	67	0.863749705078866	0.0447691415527759	0.863749705078866	350.627424035703	0	18.173423025952						1024	44	5	NaN	NaN	NaN	0.0077402	1	4800	65.156	44.498	1	1239600			13188	936	11107	11394	13188	13188		
LSEEAECPNPSTPSK	15	Unmodified	_LSEEAECPNPSTPSK_			0	0	0	O94804	O94804	O94804	STK10	Serine/threonine-protein kinase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.372334	1644.73012	2.4802	0.0020421	-0.56621	-0.0004662	1.914	0.0015759	823.372499495069	4.1928	0.062071	4.1928	4.1484	4.2105	0	429	19	1.03776581230406	0.0120685982076978	1.03776581230406	419.143409630053	0	4.87438817337676						61	8	2	NaN	NaN	NaN	2.8848E-06	1	22877	72.327	63.853	1	10408			13189	386	11108	11395	13189	13189		
LSEEASQALIEAYVDMR	17	Unmodified	_LSEEASQALIEAYVDMR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.315541	1923.92479	-0.10401	-6.6807E-05	0.42927	0.00027573	0.32526	0.00020892	642.31614438006	17.114	0.11526	17.114	17.069	17.184	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	568.109071514294	0	9.80310677521152						191	14	3	NaN	NaN	NaN	0.033173	1	30146	45.183	44.445	1	42243			13190	950	11109	11396	13190	13190		
LSEEASQALIEAYVDMR	17	Unmodified	_LSEEASQALIEAYVDMR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.969673	1923.92479	1.0144	0.00097686	2.0978	0.0020201	3.1122	0.002997	962.971479333789	17.122	0.21283	17.122	17.069	17.282	0	225	55	1.17390432875292	0.0358683429143114	1.17390432875292	473.55322343001	0	14.4692961684616						658	25	5	NaN	NaN	NaN	1.1974E-13	1	30147	153.18	141.5	1	126320			13191	950	11109	11396	13191	13191		
LSEEFLTAHPR	11	Unmodified	_LSEEFLTAHPR_			0	0	0	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.894577	1298.6619	-1.6451	-0.00071378	-0.415	-0.00018007	-2.0601	-0.00089385	433.894489953634	7.3142	0.133	7.3142	7.2698	7.4028	0	816	31	0.775960037304758	0.0204744871478547	0.775960037304758	471.145033853575	0	12.4316362655954						204	16	3	NaN	NaN	NaN	0.022829	1	12313	30.918	24.228	1	47425			13192	1870	11110	11397	13192	13192		
LSEEFLTAHPR	11	Unmodified	_LSEEFLTAHPR_			0	0	0	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.338227	1298.6619	1.7811	0.0011583	6.7545	0.0043927	8.5356	0.005551	650.844977711664	7.3142	0.12414	7.3142	7.2521	7.3762	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	402.951940107202	0	6.53255254164611						195	15	3	NaN	NaN	NaN	0.019443	1	12320	44.57	37.419	1	53909			13193	1870	11110	11397	13193	13193		
LSEFIPAVFR	10	Unmodified	_LSEFIPAVFR_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.832049	1177.64954	-0.057788	-3.4085E-05	-2.2711	-0.0013396	-2.3289	-0.0013737	589.831065618464	15.624	0.13298	15.624	15.571	15.704	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	364.019204622696	0	8.22902886916705						298	16	4	NaN	NaN	NaN	0.035671	1	8831	49.96	42.81	1	76367			13194	1592	11111	11398	13194	13194		
LSEGFSIHTR	10	Unmodified	_LSEGFSIHTR_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	382.86825	1145.58292	-1.569	-0.00060071	0.37377	0.0001431	-1.1952	-0.00045761	383.202714939898	5.9307	0.17741	5.9307	5.8243	6.0017	0	843	34	0.757518876820989	0.0225486205896858	0.757518876820989	460.593238845877	0	13.7102090874554						163	21	2	NaN	NaN	NaN	0.042383	1	7943	32.14	21.438	1	39939			13195	781	11112	11399	13195	13195		
LSEGFSIHTR	10	Unmodified	_LSEGFSIHTR_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.798737	1145.58292	1.7262	0.00099052	1.4586	0.00083697	3.1849	0.0018275	573.799906575272	5.9307	0.30155	5.9307	5.8775	6.1791	0	561	55	0.948993180460448	0.0364418454762743	0.948993180460448	384.680758394508	0	14.7719467786976						534	35	4	NaN	NaN	NaN	2.5759E-05	1	7944	138.26	127.43	1	343140			13196	781	11112	11399	13196	13196		
LSEGSQPAEEEEDQETPSR	19	Unmodified	_LSEGSQPAEEEEDQETPSR_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.45891	2116.90327	3.0858	0.0032693	-2.0088	-0.0021282	1.077	0.0011411	1059.95774201778	4.4233	0.1064	4.4233	4.3701	4.4765	0	252	31	1.15595906938629	0.0199542576953273	1.15595906938629	466.009580810697	0	8.04429456911913						241	13	3	NaN	NaN	NaN	5.9541E-05	1	33571	49.485	48.391	1	48043			13197	3269	11113	11400	13197	13197		
LSEGVTISYK	10	Unmodified	_LSEGVTISYK_			0	0	0	P05556	P05556	P05556	ITGB1	Integrin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.797872	1095.58119	0.83588	0.00045873	-1.708	-0.00093733	-0.87209	-0.0004786	548.796461497476	7.3674	0.1152	7.3674	7.3231	7.4383	0	648	37	0.890187667287968	0.0243721251806781	0.890187667287968	361.039364176289	0	9.88476576592524						215	14	2	NaN	NaN	NaN	0.0025789	1	6599	67.881	55.053	1	74600			13198	535	11114	11401	13198	13198		
LSEHATAPTR	10	Unmodified	_LSEHATAPTR_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.783087	1081.55162	1.1725	0.00063523	-0.48309	-0.00026173	0.6894	0.00037351	541.78285675265	2.1355	0.17735	2.1355	2.1178	2.2951	0	669	22	0.875957769340875	0.0142397763386857	0.875957769340875	355.325278482735	0	5.77625163012436						145	21	2	NaN	NaN	NaN	4.9446E-05	1	6245	88.181	70.785	1	27602			13199	946	11115	11402	13199	13199		
LSEHATAPTR	10	Unmodified	_LSEHATAPTR_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	361.524484	1081.55162	-0.63393	-0.00022918	2.7722	0.0010022	2.1382	0.00077302	361.525330359504	2.1444	0.13301	2.1444	2.1089	2.2419	0	861	19	0.745211914437924	0.0123121104560218	0.745211914437924	453.428573800228	0	7.49137604537032						116	16	2	NaN	NaN	NaN	0.016395	1	6246	33.426	31.627	1	21571			13200	946	11115	11402	13200	13200		
LSEIDVSSEGVK	12	Unmodified	_LSEIDVSSEGVK_			0	0	0	Q96C19	Q96C19	Q96C19	EFHD2	EF-hand domain-containing protein D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.827357	1261.64016	1.2587	0.00079525	-0.41273	-0.00026077	0.84592	0.00053448	631.827132452873	7.527	0.25713	7.527	7.4205	7.6777	0	579	46	0.936845902828289	0.0303745102206231	0.936845902828289	379.341010149673	0	12.2990316284754						382	30	3	NaN	NaN	NaN	0.00058925	1	11272	72.922	58.159	1	191810			13201	2488	11116	11403	13201	13201		
LSEIHHLHPEYVR	13	Unmodified	_LSEIHHLHPEYVR_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	408.217858	1628.84232	-1.2258	-0.0005004	-0.62608	-0.00025558	-1.8519	-0.00075598	408.217136939432	4.6273	0.23948	4.6273	4.5563	4.7958	0	843	25	0.757518876820989	0.016402423941871	0.757518876820989	611.95233429223	0	13.2504970191663						267	28	3	NaN	NaN	NaN	0.030576	1	22442	30.349	23.209	1	62938			13202	2129	11117	11404	13202	13202		
LSEIPLTLHSVSELVR	16	Unmodified	_LSEIPLTLHSVSELVR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.343759	1792.00945	-1.2381	-0.00074084	-0.79049	-0.00047299	-2.0286	-0.0012138	598.343426620269	15.65	0.14184	15.65	15.606	15.748	0	708	37	0.849494101904619	0.0244534611468455	0.849494101904619	514.297779899139	0	14.8045298377888						467	17	5	NaN	NaN	NaN	0.00010415	1	27034	57.042	47.781	1	208480			13203	3238	11118	11405	13203	13203		
LSEIPLTLHSVSELVR	16	Unmodified	_LSEIPLTLHSVSELVR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.012001	1792.00945	0.31551	0.00028302	1.2388	0.0011112	1.5543	0.0013943	897.013470834037	15.659	0.079788	15.659	15.624	15.704	1.7764E-15	99	43	1.25735632164274	0.0277449111251171	1.25735632164274	507.485057092539	0	11.1982001951219						306	10	4	NaN	NaN	NaN	7.2713E-05	1	27035	68.108	64.372	1	73698			13204	3238	11118	11405	13204	13204		
LSEISGIPLDDIEFAK	16	Unmodified	_LSEISGIPLDDIEFAK_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.961642	1745.90873	0.94335	0.00082445	-0.36477	-0.0003188	0.57858	0.00050565	873.961006703051	16.794	0.23941	16.794	16.679	16.918	0	288	55	1.13199748998575	0.0359720544761399	1.13199748998575	456.981263962104	0	14.5217238264609						447	28	4	NaN	NaN	NaN	0.00017433	1	25778	93.162	70.206	1	111980			13205	2572	11119	11406	13205	13205		
LSELDDRADALQAGASQFETSAAK	24	Unmodified	_LSELDDRADALQAGASQFETSAAK_			0	0	1	Q15836;P63027	Q15836	Q15836	VAMP3;VAMP2	Vesicle-associated membrane protein 3;Vesicle-associated membrane protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.073385	2493.19833	1.1141	0.00092701	1.3886	0.0011554	2.5027	0.0020824	832.408868738433	11.704	0.070926	11.704	11.669	11.74	0	498	52	0.991429299781895	0.0343103064176149	0.991429299781895	598.930878840545	0	20.7271481491531						314	9	4	NaN	NaN	NaN	1.4654E-06	1	36796	62.304	56.257	1	71027			13206	1873	11120	11407	13206	13206		
LSELLPEEVEAEVK	14	Unmodified	_LSELLPEEVEAEVK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.921986	1583.82942	2.043	0.00162	-0.48243	-0.00038253	1.5606	0.0012374	792.921420908218	14.054	0.20394	14.054	13.957	14.161	0	357	67	1.08596037261705	0.0441174739341266	1.08596037261705	438.749567293107	0	17.8243360317244						868	24	4	NaN	NaN	NaN	0.0003333	1	21089	36.952	20.299	1	442390			13207	3357	11121	11408	13207	13207		
LSELQETSEQAQSK	14	Unmodified	_LSELQETSEQAQSK_			0	0	0	Q5T1M5	Q5T1M5	Q5T1M5	FKBP15	FK506-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.386299	1576.75804	2.4172	0.0019081	-0.95161	-0.00075119	1.4656	0.0011569	789.386059237203	4.7425	0.088746	4.7425	4.7071	4.7958	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.229452534948	0	8.13251755800229						161	11	3	NaN	NaN	NaN	1.2639E-05	1	20873	93.162	82.375	1	38235			13208	1988	11122	11409	13208	13208		
LSELSNSQQSVQTLSLWLIHHR	22	Unmodified	_LSELSNSQQSVQTLSLWLIHHR_			0	0	0	Q9NQG5;Q96P16	Q9NQG5;Q96P16	Q9NQG5	RPRD1B;RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	644.844947	2575.35068	0.12045	7.7672E-05	-0.42615	-0.0002748	-0.3057	-0.00019713	645.095209715	15.792	0.08869	15.792	15.757	15.845	-1.7764E-15	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	725.077091431886	0	13.0815021744908						127	11	2	NaN	NaN	NaN	0.0007307	1	37142	47.844	46.323	1	68622			13209	3000;2592	11123	11410	13209	13209		
LSENVIDR	8	Unmodified	_LSENVIDR_			0	0	0	Q9NX63	Q9NX63	Q9NX63	CHCHD3	MICOS complex subunit MIC19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.253631	944.49271	0.20529	9.7154E-05	3.0055	0.0014224	3.2108	0.0015195	473.255005264061	5.2213	0.30148	5.2213	5.1859	5.4873	0	723	67	0.839303037468863	0.0448251357627677	0.839303037468863	341.077209204559	0	18.2161049414139						551	35	2	NaN	NaN	NaN	0.010946	1	3140	81.642	45.073	1	436990			13210	3100	11124	11411	13210	13210		
LSEQELQFR	9	Unmodified	_LSEQELQFR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.29857	1148.58259	0.65938	0.00037934	0.12734	7.3257E-05	0.78672	0.0004526	575.298878758226	8.5382	0.1685	8.5382	8.4938	8.6623	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	366.594752762589	0	10.6971626071503						479	20	4	NaN	NaN	NaN	8.7327E-13	1	8029	208.72	99.36	1	281300			13211	1915	11125	11412	13211	13211		
LSESGAIMTDLEENPK	16	Unmodified	_LSESGAIMTDLEENPK_			0	0	0	Q9H2J4	Q9H2J4	Q9H2J4	PDCL3	Phosducin-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.416742	1732.81893	2.1834	0.0018939	-2.2324	-0.0019364	-0.048954	-4.2463E-05	867.414290535967	11.181	0.14188	11.181	11.146	11.287	0	282	31	1.13599383354359	0.0199817200584811	1.13599383354359	458.621862808307	0	8.06699244726406						299	17	3	NaN	NaN	NaN	5.0197E-05	1	25402	112.95	100.93	1	67540			13212	2869	11126	11413	13212	13212		
LSESQLSFR	9	Unmodified	_LSESQLSFR_			0	0	0	Q96PK6	Q96PK6	Q96PK6	RBM14	RNA-binding protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.780013	1065.54547	0.60635	0.00032366	-2.3683	-0.0012642	-1.762	-0.0009405	533.779304525508	8.0947	0.1952	8.0947	8.0414	8.2366	0	681	40	0.867820189810857	0.0264526463218361	0.867820189810857	352.090842778264	0	10.7323321657227						409	23	4	NaN	NaN	NaN	0.00075076	1	5856	99.305	78.03	1	206340			13213	2596	11127	11414	13213	13213		
LSEVEEAQEASMETDPKP	18	Unmodified	_LSEVEEAQEASMETDPKP_			0	0	1	Q6I9Y2	Q6I9Y2	Q6I9Y2	THOC7	THO complex subunit 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.45151	1988.88847	2.117	0.0021074	-1.4913	-0.0014845	0.62579	0.00062294	995.951705115195	8.9375	0.10658	8.9375	8.8753	8.9819	0	249	43	1.15795408347545	0.027935963941738	1.15795408347545	467.009628473313	0	11.2667370214871						244	13	3	NaN	NaN	NaN	5.8913E-10	1	31431	133.13	126.61	1	42087			13214	2034	11128	11415	13214	13214		
LSEVLQAVTDHDIPQQLVER	20	Unmodified	_LSEVLQAVTDHDIPQQLVER_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.072768	2289.19647	0.93869	0.00071722	-0.68855	-0.0005261	0.25013	0.00019112	764.071457949086	14.568	0.16847	14.568	14.515	14.684	-1.7764E-15	597	76	0.924688525662974	0.0506242079777197	0.924688525662974	558.888011542023	0	30.597614382932						602	20	5	NaN	NaN	NaN	6.6056E-11	1	35558	130.12	117.06	1	175440			13215	2452	11129	11416	13215	13215		
LSEVQASLHG	10	Unmodified	_LSEVQASLHG_			0	0	0	Q9NXW2	Q9NXW2	Q9NXW2	DNAJB12	DnaJ homolog subfamily B member 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.772188	1039.52982	0.68277	0.00035557	-1.7326	-0.00090228	-1.0498	-0.00054671	520.771212943029	5.78	0.088647	5.78	5.7445	5.8332	0	690	22	0.86171403876517	0.0142516439925704	0.86171403876517	349.725087924656	0	5.78400400150707						99	11	2	NaN	NaN	NaN	0.0028752	1	5218	60.892	45.31	1	25495			13216	3106	11130	11417	13216	13216		
LSFAHPPSAEVEAIALATLHDR	22	Unmodified	_LSFAHPPSAEVEAIALATLHDR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	587.061663	2344.21754	0.32135	0.00018865	-0.076682	-4.5017E-05	0.24467	0.00014363	587.312358229874	16.253	0.20393	16.253	16.191	16.395	0	591	37	0.928742107665821	0.0243214961029116	0.928742107665821	748.342884870279	0	19.5972793822795						635	24	5	NaN	NaN	NaN	0.033851	1	35991	29.408	29.043	1	352150			13217	141	11131	11418	13217	13217		
LSFAHPPSAEVEAIALATLHDR	22	Unmodified	_LSFAHPPSAEVEAIALATLHDR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.413125	2344.21754	0.96116	0.00075202	0.67504	0.00052816	1.6362	0.0012802	782.748245161912	16.245	0.15962	16.245	16.209	16.369	0	414	31	1.04781950764076	0.0201032305459359	1.04781950764076	633.219582701924	0	12.1488091836733						410	19	5	NaN	NaN	NaN	1.1796E-06	1	35993	97.268	94.194	1	124210			13218	141	11131	11418	13218	13218		
LSFAHPPSAEVEAIALATLHDR	22	Unmodified	_LSFAHPPSAEVEAIALATLHDR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.413125	2344.21754	1.1418	0.00089339	2.5179	0.0019701	3.6598	0.0028635	782.749273539113	16.253	0.15073	16.253	16.209	16.36	0	360	25	1.08395544855938	0.0160404989244494	1.08395544855938	655.057292157569	0	9.69361407267331						335	18	5	NaN	NaN	NaN	6.3282E-06	1	35994	86.952	84.85	1	103960			13219	141	11131	11418	13219	13219		
LSFAVPFR	8	Unmodified	_LSFAVPFR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.76872	935.522887	-1.3459	-0.00063094	-2.2408	-0.0010504	-3.5868	-0.0016814	468.767489757942	13.903	0.10642	13.903	13.841	13.948	0	774	28	0.804600385996946	0.0183924424534009	0.804600385996946	327.019678940575	0	7.47537626220702						188	13	3	NaN	NaN	NaN	0.036761	1	2983	38.322	22.824	1	56382			13220	1465	11132	11419	13220	13220		
LSFAVPFR	8	Unmodified	_LSFAVPFR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.76872	935.522887	-0.70843	-0.00033209	-1.9683	-0.00092266	-2.6767	-0.0012547	468.767475861731	13.895	0.088669	13.895	13.841	13.93	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	336.979223815443	0	8.29269976271655						174	11	3	NaN	NaN	NaN	0.072788	1	2984	36.57	13.26	1	53099			13221	1465	11132	11419	13221	13221		
LSFFFDFR	8	Unmodified	_LSFFFDFR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.77146	1077.52837	-0.33144	-0.0001789	-1.3885	-0.00074948	-1.72	-0.00092838	539.770580805166	18.452	0.088745	18.452	18.417	18.506	0	663	31	0.880024865079826	0.0203354810451108	0.880024865079826	356.991830847309	0	8.24931305639461						213	11	3	NaN	NaN	NaN	0.0028771	1	6144	93.561	68.307	1	68272			13222	1127	11133	11420	13222	13222		
LSFGDTLQVQNIHGAFNALGGADR	24	Unmodified	_LSFGDTLQVQNIHGAFNALGGADR_			0	0	0	Q969X5	Q969X5	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.422571	2500.24588	0.70445	0.00058781	-0.71792	-0.00059905	-0.013466	-1.1236E-05	834.756617802221	15.916	0.10645	15.916	15.863	15.97	0	525	61	0.973257487423603	0.0404013742155731	0.973257487423603	587.943954087205	0	24.4064330496357						438	13	5	NaN	NaN	NaN	0.00013827	1	36826	61.867	58.793	1	101290			13223	2464	11134	11421	13223	13223		
LSFLYLITGNLEK	13	Unmodified	_LSFLYLITGNLEK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.929417	1509.84428	1.1581	0.00087544	-1.4874	-0.0011244	-0.32928	-0.00024891	755.92816051328	19.836	0.062071	19.836	19.818	19.88	0	447	43	1.02569221487577	0.0281756225975058	1.02569221487577	414.576005093255	0	11.3883452443908						201	8	4	NaN	NaN	NaN	0.00041851	1	18810	52.837	45.28	1	65487			13224	1241	11135	11422	13224	13224		
LSFQHDPETSVLVLR	15	Unmodified	_LSFQHDPETSVLVLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.980821	1739.92063	-0.33279	-0.00019334	0.31624	0.00018373	-0.016545	-9.6122E-06	581.315623922127	12.236	0.46999	12.236	11.908	12.378	0	738	214	0.829104889055312	0.144372755200842	0.829104889055312	502.069051710331	0	87.4257205009179						2092	54	6	NaN	NaN	NaN	2.3734E-08	1	25599	193.34	168.51	1	1762400			13225	1771	11136	11423	13225	13225		
LSFQHDPETSVLVLR	15	Unmodified	_LSFQHDPETSVLVLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.967593	1739.92063	2.2588	0.0019674	0.79689	0.00069407	3.0557	0.0026614	871.469737199971	12.236	0.1685	12.236	12.183	12.352	0	294	94	1.12800004657306	0.0619220954309587	1.12800004657306	455.379859357691	0	24.9982925037557						1289	20	5	NaN	NaN	NaN	0.00080878	1	25602	79.235	74.708	1	619710			13226	1771	11136	11423	13226	13226		
LSFYETGEIPR	11	Unmodified	_LSFYETGEIPR_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.33261	1310.65067	1.4663	0.00096241	0.77073	0.00050585	2.2371	0.0014683	656.332302309956	11.305	0.21286	11.305	11.208	11.42	0	507	52	0.985374541851584	0.0343292904819641	0.985374541851584	398.829304261921	0	13.8947440361102						693	25	4	NaN	NaN	NaN	0.00016792	1	12676	72.365	53.109	1	270340			13227	92	11137	11424	13227	13227		
LSGDWNPLHIDPNFASLAGFDK	22	Unmodified	_LSGDWNPLHIDPNFASLAGFDK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	805.397363	2413.17026	-0.078465	-6.3195E-05	-0.6765	-0.00054485	-0.75496	-0.00060805	805.730684846569	19.135	0.070919	19.135	19.109	19.179	0	564	55	0.946969335010767	0.0364317543257808	0.946969335010767	572.177372667015	0	22.0127777121087						374	9	4	NaN	NaN	NaN	5.8299E-06	1	36414	78.75	72.363	1	77970			13228	1195	11138	11425	13228	13228		
LSGEAFDINK	10	Unmodified	_LSGEAFDINK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.279846	1092.54514	1.0319	0.00056474	-2.4584	-0.0013454	-1.4265	-0.0007807	547.277880417214	7.7487	0.19519	7.7487	7.6777	7.8729	0	687	64	0.863749705078866	0.0427252799278987	0.863749705078866	350.328837625935	0	17.3289757048505						405	23	3	NaN	NaN	NaN	0.00061181	1	6524	108.3	58.343	1	122020			13229	2355	11139	11426	13229	13229		
LSGLIEDEWITIDK	14	Unmodified	_LSGLIEDEWITIDK_			0	0	0	Q13395	Q13395	Q13395	TARBP1	Probable methyltransferase TARBP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.429978	1630.8454	1.1173	0.00091216	8.3288	0.0067998	9.446	0.007712	816.436853275786	16.28	0.15961	16.28	16.191	16.351	0	300	52	1.12400150285141	0.0340040095006244	1.12400150285141	454.005407178831	0	13.7348607985666						400	19	3	NaN	NaN	NaN	0.03953	1	22524	18.507	7.72	1	94059			13230	1658	11140	11427	13230	13230		
LSGLIEDEWITIDK	14	Unmodified	_LSGLIEDEWITIDK_			0	0	0	Q13395	Q13395	Q13395	TARBP1	Probable methyltransferase TARBP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.429978	1630.8454	1.1318	0.00092405	8.7025	0.007105	9.8343	0.008029	816.436906275972	16.28	0.19506	16.28	16.2	16.395	0	360	40	1.08395544855938	0.026056835587305	1.08395544855938	437.830049148007	0	10.5248473274372						348	23	3	NaN	NaN	NaN	0.019578	1	22525	40.386	16.55	1	74628			13231	1658	11140	11427	13231	13231		
LSGLNAFDIAEELVK	15	Unmodified	_LSGLNAFDIAEELVK_			0	0	0	O95983	O95983	O95983	MBD3	Methyl-CpG-binding domain protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.93797	1617.86139	1.7734	0.0014363	-0.041318	-3.3465E-05	1.7321	0.0014029	809.938235308424	19.667	0.053194	19.667	19.641	19.694	0	303	52	1.12200181823275	0.0340086906463779	1.12200181823275	453.228362548014	0	13.7376811013888						252	7	4	NaN	NaN	NaN	6.0886E-05	1	22134	79.235	73.208	1	71053			13232	464	11141	11428	13232	13232		
LSGSNPYTTVTPQIINSK	18	Unmodified	_LSGSNPYTTVTPQIINSK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.50728	1919.00001	2.497	0.0023983	-2.2487	-0.0021599	0.24826	0.00023846	961.006554805035	11.039	0.2217	11.039	10.942	11.163	0	225	58	1.17390432875292	0.0378740379795985	1.17390432875292	473.56194068941	0	15.2786751765511						1003	26	5	NaN	NaN	NaN	5.6652E-14	1	30042	120.75	109.77	1	323880			13233	221	11142	11429	13233	13233		
LSGTVGVAAVTAGPGLTNTVTAVK	24	Unmodified	_LSGTVGVAAVTAGPGLTNTVTAVK_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.61535	2183.21615	0.1679	0.00018345	0.7708	0.00084219	0.9387	0.0010256	1093.11733716156	13.336	0.062121	13.336	13.3	13.363	0	81	37	1.2692388538616	0.0237553053765378	1.2692388538616	511.575504507993	0	9.57474024354815						124	8	2	NaN	NaN	NaN	2.8592E-09	1	34498	67.927	62.585	1	30890			13234	6	11143	11430	13234	13234		
LSHANSAVVLSAVK	14	Unmodified	_LSHANSAVVLSAVK_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.401358	1394.78816	1.9527	0.0013637	-0.63731	-0.0004451	1.3153	0.00091864	698.401022539567	6.4717	0.16848	6.4717	6.4274	6.5959	8.8818E-16	474	43	1.00756305028564	0.0282184646673942	1.00756305028564	407.553365061194	0	11.4142040329849						442	20	4	NaN	NaN	NaN	4.2064E-12	1	15295	170.22	147.17	1	194450			13235	1423;1587	11144	11431	13235	13235		
LSHANSAVVLSAVK	14	Unmodified	_LSHANSAVVLSAVK_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.401358	1394.78816	1.7265	0.0012058	0.30114	0.00021032	2.0276	0.0014161	698.401218402186	6.4629	0.05322	6.4629	6.4451	6.4983	0	396	22	1.05987478976334	0.0140577073592631	1.05987478976334	428.71315398486	0	5.6862604130169						74	7	2	NaN	NaN	NaN	0.034507	1	15297	50.314	44.448	1	15786			13236	1423;1587	11144	11431	13236	13236		
LSHEGPGSELPAGALYR	17	Unmodified	_LSHEGPGSELPAGALYR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.300442	1752.8795	0.014437	8.4498E-06	-0.43954	-0.00025726	-0.4251	-0.00024881	585.300226170812	8.4318	0.17736	8.4318	8.3608	8.5382	0	702	49	0.853568545818287	0.0326091497098583	0.853568545818287	516.852985747061	0	19.7454984403809						533	21	4	NaN	NaN	NaN	2.1995E-05	1	25976	81.799	55.22	1	119850			13237	1736	11145	11432	13237	13237		
LSHETVTIELK	11	Unmodified	_LSHETVTIELK_			0	0	0	P62314	P62314	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.906482	1268.69762	-1.9561	-0.00082922	0.96223	0.0004079	-0.9939	-0.00042132	423.907028116318	7.0747	0.23061	7.0747	7.0392	7.2698	0	795	28	0.790287188799094	0.0184129317501174	0.790287188799094	479.963223518468	0	11.1826816915016						295	27	4	NaN	NaN	NaN	0.0076815	1	11478	44.82	37.67	1	131820			13238	1385	11146	11433	13238	13238		
LSHETVTIELK	11	Unmodified	_LSHETVTIELK_			0	0	0	P62314	P62314	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.356085	1268.69762	1.5156	0.00096295	0.11743	7.4609E-05	1.633	0.0010376	635.356240823992	7.0747	0.2129	7.0747	7.0303	7.2432	0	519	43	0.97729762293174	0.0282770433233913	0.97729762293174	395.696598509439	0	11.4490505209706						595	25	4	NaN	NaN	NaN	6.1316E-23	1	11479	167.06	134.92	1	286330			13239	1385	11146	11433	13239	13239		
LSHLLSEKPEDK	12	Unmodified	_LSHLLSEKPEDK_			0	0	1	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	465.920791	1394.74054	-0.37205	-0.00017335	1.6035	0.00074709	1.2314	0.00057375	465.921531869171	3.6342	0.15958	3.6342	3.5987	3.7583	0	816	40	0.775960037304758	0.0266223965943758	0.775960037304758	470.803761894983	0	16.1527963615601						335	19	3	NaN	NaN	NaN	5.6863E-05	1	15290	94.66	82.064	1	114420			13240	2466	11147	11434	13240	13240		
LSHLLSEKPEDK	12	Unmodified	_LSHLLSEKPEDK_			0	0	1	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.377549	1394.74054	2.1742	0.0015184	-0.70052	-0.00048923	1.4737	0.0010292	698.37718301725	3.6431	0.079782	3.6431	3.6076	3.6874	0	462	28	1.01562323939346	0.0181341741775967	1.01562323939346	410.813802385441	0	7.33516993119161						116	10	2	NaN	NaN	NaN	0.0003802	1	15291	101.45	91.357	1	25708			13241	2466	11147	11434	13241	13241		
LSHSNPTILFDYILSQIQK	19	Unmodified	_LSHSNPTILFDYILSQIQK_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	739.735316	2216.18412	-1.1546	-0.00085412	0.6269	0.00046374	-0.52773	-0.00039038	740.069905810254	19.986	0.0088949	19.986	19.986	19.995	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	536.913907415141	0	9.82785292371682						54	2	4	NaN	NaN	NaN	0.00068796	1	34855	43.177	40.431	1	7868.2			13242	2328	11148	11435	13242	13242		
LSIFDANESGFESYEALPQHK	21	Unmodified	_LSIFDANESGFESYEALPQHK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	794.713128	2381.11756	1.5955	0.001268	-1.3477	-0.001071	0.2478	0.00019693	795.046584264487	14.489	0.097523	14.489	14.444	14.542	0	459	52	1.01763759082241	0.0342439860536077	1.01763759082241	614.923885750261	0	20.6924794814671						449	12	4	NaN	NaN	NaN	3.1352E-08	1	36260	91.1	78.916	1	149620			13243	849	11149	11436	13243	13243		
LSIIFPLWK	9	Unmodified	_LSIIFPLWK_			0	0	0	O00443	O00443	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.844428	1115.6743	-1.234	-0.00068963	0.49667	0.00027756	-0.73735	-0.00041207	558.844583015161	19.064	0.053176	19.064	19.038	19.091	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	358.486398262797	0	6.59385515655748						101	7	3	NaN	NaN	NaN	0.0074365	1	7162	56.014	44.654	1	18613			13244	80	11150	11437	13244	13244		
LSILYPATTGR	11	Unmodified	_LSILYPATTGR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.340238	1190.66592	1.3814	0.00082381	0.01043	6.2199E-06	1.3919	0.00083003	596.340252540842	10.746	0.28376	10.746	10.649	10.933	0	594	55	0.926715457081489	0.0364771975402507	0.926715457081489	375.481123665201	0	14.7796165650515						922	33	5	NaN	NaN	NaN	0.00073231	1	9191	83.358	58.104	1	821510			13245	893	11151	11438	13245	13245		
LSISETYDLK	10	Unmodified	_LSISETYDLK_			0	0	0	CON__P34955	CON__P34955	CON__P34955			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.808436	1167.60232	1.0421	0.00060944	2.6608	0.001556	3.7029	0.0021655	584.809490857992	9.913	0.13301	9.913	9.8598	9.9928	0	567	34	0.944945209309785	0.0222715533643577	0.944945209309785	382.953954414753	0	9.0258983778221						215	16	3	NaN	NaN	NaN	0.0067053	1	8550	37.591	18.335	1	50493		+	13246	32	11152	11439	13246	13246		
LSLAQEDLISNR	12	Unmodified	_LSLAQEDLISNR_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.867348	1357.72014	1.4356	0.000976	1.1395	0.00077469	2.575	0.0017507	679.868436262899	10.64	0.17732	10.64	10.516	10.693	0	480	43	1.00353128488872	0.0282262646321653	1.00353128488872	406.031301826036	0	11.420418223987						263	21	2	NaN	NaN	NaN	0.0057741	1	14132	38.1	30.099	1	72661			13247	1810	11153	11440	13247	13247		
LSLCGEESFGTGSDHIR	17	Unmodified	_LSLCGEESFGTGSDHIR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.287985	1863.84213	1.2043	0.00074945	-0.30905	-0.00019232	0.89529	0.00055713	622.287579092997	9.2303	0.22172	9.2303	9.1592	9.381	0	564	34	0.946969335010767	0.0222653859126632	0.946969335010767	573.141383364177	0	13.4758472226304						447	26	5	NaN	NaN	NaN	9.55E-07	1	28776	97.084	95.1	1	161780			13248	991	11154	11441	13248	13248		
LSLCGEESFGTGSDHIR	17	Unmodified	_LSLCGEESFGTGSDHIR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.928339	1863.84213	1.6051	0.0014974	-0.27723	-0.00025863	1.3279	0.0012388	932.927969236001	9.2391	0.079806	9.2391	9.2036	9.2834	0	237	31	1.16593139812432	0.0199405477396462	1.16593139812432	470.445505236769	0	8.04587737423259						190	10	4	NaN	NaN	NaN	0.047819	1	28777	30.862	27.777	1	32792			13249	991	11154	11441	13249	13249		
LSLDDLLQR	9	Unmodified	_LSLDDLLQR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.803488	1071.59242	0.44065	0.00023654	-1.4998	-0.00080512	-1.0592	-0.00056858	536.802865529814	15.473	0.17748	15.473	15.429	15.606	0	657	37	0.884090832094921	0.0243924210858615	0.884090832094921	358.666311999201	0	9.8957475793145						400	21	4	NaN	NaN	NaN	0.0057716	1	6000	84.368	55.059	1	243200			13250	867	11155	11442	13250	13250		
LSLDELHR	8	Unmodified	_LSLDELHR_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.769448	981.524344	0.62475	0.00030723	-2.0845	-0.0010251	-1.4598	-0.00071787	491.7690109415	7.2698	0.25714	7.2698	7.1634	7.4205	0	690	37	0.86171403876517	0.0244296961484468	0.86171403876517	349.995092862274	0	9.92240277798567						373	30	3	NaN	NaN	NaN	0.00059109	1	3874	105.04	64.837	1	167570			13251	522	11156	11443	13251	13251		
LSLDGQNIYNACCTLR	16	Unmodified	_LSLDGQNIYNACCTLR_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.448385	1896.88222	2.2316	0.0021188	-1.8797	-0.0017847	0.35195	0.00033416	949.948783398471	12.157	0.25721	12.157	12.077	12.334	0	282	58	1.13599383354359	0.0379522251090028	1.13599383354359	458.306915603835	0	15.311497929308						1015	30	6	NaN	NaN	NaN	1.8518E-08	1	29530	137.58	119.07	1	448430			13252	856	11157	11444	13252	13252		
LSLEEFIR	8	Unmodified	_LSLEEFIR_			0	0	0	P37235;P84074;P61601	P37235	P37235	HPCAL1;HPCA;NCALD	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.782025	1005.5495	-0.27065	-0.00013635	-1	-0.00050381	-1.2707	-0.00064015	503.781623415484	15.127	0.20394	15.127	15.074	15.278	0	687	70	0.863749705078866	0.046852880285563	0.863749705078866	350.706045936835	0	19.0235531069748						609	24	3	NaN	NaN	NaN	3.7305E-05	1	4412	108.92	84.074	1	392300			13253	999	11158	11445	13253	13253		
LSLEFGDPASSLFR	14	Unmodified	_LSLEFGDPASSLFR_			0	0	0	Q6L8Q7	Q6L8Q7	Q6L8Q7	PDE12	2,5-phosphodiesterase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.896106	1537.77766	1.4778	0.0011378	-3.1709	-0.0024413	-1.693	-0.0013035	769.894989065733	17.743	0.13301	17.743	17.699	17.832	0	423	37	1.04178812298108	0.0241305373401517	1.04178812298108	421.012350671206	0	9.75174704379032						202	16	3	NaN	NaN	NaN	0.00018952	1	19665	84.999	69.12	1	85487			13254	2043	11159	11446	13254	13254		
LSLEFPSGYPYNAPTVK	17	Unmodified	_LSLEFPSGYPYNAPTVK_			0	0	0	O00762	O00762	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.982909	1881.95127	1.0238	0.00096442	-0.18731	-0.00017644	0.83651	0.00078798	941.982451552649	14.87	0.13299	14.87	14.817	14.95	-1.7764E-15	222	76	1.17589687683038	0.0498479746966392	1.17589687683038	474.432777612582	0	20.11189378905						555	16	4	NaN	NaN	NaN	0.00013618	1	29190	77.696	60.282	1	147040			13255	98	11160	11447	13255	13255		
LSLEGDHSTPPSAYGSVK	18	Unmodified	_LSLEGDHSTPPSAYGSVK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.639012	1843.89521	1.3098	0.00080636	-0.28112	-0.00017307	1.0287	0.00063329	615.638942220092	7.2698	0.39901	7.2698	7.1811	7.5801	0	675	100	0.871889544407995	0.0671304582516573	0.871889544407995	527.742402368964	0	40.6331163586942						3017	46	6	NaN	NaN	NaN	4.2441E-14	1	28323	167.01	157.75	1	2574100			13256	558	11161	11448	13256	13256		
LSLEGDHSTPPSAYGSVK	18	Unmodified	_LSLEGDHSTPPSAYGSVK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.95488	1843.89521	3.1894	0.0029436	-1.957	-0.0018062	1.2323	0.0011374	922.953196072301	7.2787	0.32806	7.2787	7.19	7.5181	0	237	118	1.16593139812432	0.0778591967757252	1.16593139812432	470.483107268732	0	31.4181751065467						2525	38	5	NaN	NaN	NaN	2.1933E-10	1	28324	115.79	99.504	1	1182500			13257	558	11161	11448	13257	13257		
LSLELFGR	8	Unmodified	_LSLELFGR_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.77146	933.528367	-1.1798	-0.00055189	-1.7245	-0.00080665	-2.9043	-0.0013585	467.770879207983	14.444	0.088666	14.444	14.409	14.498	0	738	28	0.829104889055312	0.0183617725733707	0.829104889055312	336.989644181565	0	7.46314162143386						119	11	2	NaN	NaN	NaN	0.013592	1	2944	58.286	30.55	1	34263			13258	402	11162	11449	13258	13258		
LSLLEVGCGTGANFK	15	Unmodified	_LSLLEVGCGTGANFK_			0	0	0	Q9H8H3	Q9H8H3	Q9H8H3	METTL7A	Methyltransferase-like protein 7A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.40324	1564.79193	1.6196	0.0012688	-0.87418	-0.00068483	0.74544	0.00058398	783.402853141905	13.611	0.12415	13.611	13.54	13.664	0	396	31	1.05987478976334	0.0200810554330217	1.05987478976334	428.255629356499	0	8.11400093263063						233	15	4	NaN	NaN	NaN	0.00073417	1	20494	90.689	79.207	1	50708			13259	2927	11163	11450	13259	13259		
LSLLLNDISR	10	Unmodified	_LSLLLNDISR_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.340238	1142.66592	0.42691	0.00024434	-1.0102	-0.0005782	-0.58332	-0.00033386	572.339948266263	14.054	0.21281	14.054	14.001	14.214	0	627	52	0.90440375274676	0.0345056424959307	0.90440375274676	366.617275805982	0	13.9875189741008						700	25	4	NaN	NaN	NaN	2.5659E-05	1	7868	139.02	107.07	1	632550			13260	1860	11164	11451	13260	13260		
LSLNIDPDAK	10	Unmodified	_LSLNIDPDAK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.295496	1084.57644	1.0368	0.00056327	0.70248	0.00038166	1.7393	0.00094493	543.296043695391	10.081	0.3458	10.081	9.9928	10.339	0	657	85	0.884090832094921	0.0569235916522299	0.884090832094921	358.611805273203	0	23.0897903518233						1365	40	3	NaN	NaN	NaN	0.00037376	1	6325	114.39	65.069	1	1194900			13261	700	11165	11452	13261	13261		
LSLNLDHK	8	Unmodified	_LSLNLDHK_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.266542	938.51853	0.39205	0.00018437	-0.26741	-0.00012576	0.12464	5.8612E-05	470.26633718895	6.0283	0.26602	6.0283	5.984	6.25	0	726	34	0.837263974740672	0.0224328108600214	0.837263974740672	340.279649608573	0	9.11711150781065						388	31	3	NaN	NaN	NaN	0.0051847	1	3046	67.903	29.581	1	155260			13262	268	11166	11453	13262	13262		
LSLPQNETVADTTLTK	16	Unmodified	_LSLPQNETVADTTLTK_			0	0	0	Q9HC35	Q9HC35	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.962174	1729.90979	2.5223	0.0021842	-0.11888	-0.00010295	2.4034	0.0020813	866.46320708502	10.693	0.17732	10.693	10.569	10.746	0	321	58	1.10999792833052	0.0380097163166782	1.10999792833052	448.132805038179	0	15.3454347588894						463	21	4	NaN	NaN	NaN	1.5519E-08	1	25325	97.084	83.285	1	101120			13263	2956	11167	11454	13263	13263		
LSLQDAVSQGVIDQDMATR	19	Unmodified	_LSLQDAVSQGVIDQDMATR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.008999	2046.00517	0.36556	0.00024968	0.18531	0.00012657	0.55086	0.00037625	683.343172229566	14.613	0.070945	14.613	14.586	14.657	0	558	34	0.951016745717027	0.0222592210224549	0.951016745717027	575.212649749474	0	13.4632597831197						107	9	2	NaN	NaN	NaN	0.041329	1	32462	22.456	21.205	1	23096			13264	718	11168	11455	13264	13264		
LSLQDAVSQGVIDQDMATR	19	Unmodified	_LSLQDAVSQGVIDQDMATR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.00986	2046.00517	1.6561	0.0016958	-1.0312	-0.001056	0.62485	0.00063985	1024.51126290001	14.604	0.36356	14.604	14.515	14.879	0	165	94	1.21370334790578	0.061650424951911	1.21370334790578	489.398911314283	0	24.8591642311845						964	42	5	NaN	NaN	NaN	1.2469E-07	1	32463	107.46	97.437	1	274030			13265	718	11168	11455	13265	13265		
LSLTQDPVVK	10	Unmodified	_LSLTQDPVVK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.321514	1098.62847	0.47937	0.00026381	-4.888	-0.00269	-4.4086	-0.0024261	550.319683688937	8.485	0.19509	8.485	8.4051	8.6002	0	657	64	0.884090832094921	0.0426778685344582	0.884090832094921	358.554290533192	0	17.3085528300089						447	23	3	NaN	NaN	NaN	0.0047017	1	6680	76.605	44.477	1	206730			13266	450	11169	11456	13266	13266		
LSMSQLNEK	9	Unmodified	_LSMSQLNEK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.268424	1048.5223	0.9055	0.00047563	-0.14695	-7.719E-05	0.75855	0.00039844	525.268770861239	6.1968	0.22172	6.1968	6.1081	6.3299	0	684	52	0.86578508874114	0.034596730190302	0.86578508874114	351.337917872232	0	14.0394461724003						625	26	4	NaN	NaN	NaN	4.3135E-05	1	5429	122.44	79.601	1	381160			13267	1575	11170	11457	13267	13267		
LSMWDRPDDLIGR	13	Unmodified	_LSMWDRPDDLIGR_			0	0	1	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.264564	1572.77186	-1.1271	-0.00059205	0.39959	0.00020989	-0.72756	-0.00038216	525.26446067758	12.6	0.14189	12.6	12.547	12.689	0	750	37	0.820941264895493	0.024497688241599	0.820941264895493	497.542408123079	0	14.8471508527778						429	17	4	NaN	NaN	NaN	0.00043731	1	20750	79.311	70.334	1	193340			13268	119	11171	11458	13268	13268		
LSMYGVDLHHAK	12	Unmodified	_LSMYGVDLHHAK_			0	0	0	O43491;Q9H4G0	O43491	O43491	EPB41L2;EPB41L1	Band 4.1-like protein 2;Band 4.1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.567695	1369.68126	-1.2887	-0.00058967	-0.89332	-0.00040875	-2.182	-0.00099842	457.567503579319	6.658	0.09755	6.658	6.6313	6.7289	0	822	31	0.771863999559055	0.0204801911124388	0.771863999559055	468.402535927044	0	12.4283208684652						204	12	3	NaN	NaN	NaN	0.021933	1	14475	28.647	24.754	1	53854			13269	206	11172	11459	13269	13269		
LSMYGVDLHHAK	12	Unmodified	_LSMYGVDLHHAK_			0	0	0	O43491;Q9H4G0	O43491	O43491	EPB41L2;EPB41L1	Band 4.1-like protein 2;Band 4.1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.847904	1369.68126	1.6873	0.0011572	1.002	0.00068725	2.6893	0.0018445	685.847676530007	6.658	0.088688	6.658	6.6225	6.7111	0	447	25	1.02569221487577	0.01610257649452	1.02569221487577	414.961144754516	0	6.51456984732249						166	11	5	NaN	NaN	NaN	0.020526	1	14479	43.168	35.167	1	47910			13270	206	11172	11459	13270	13270		
LSNIFVIGK	9	Unmodified	_LSNIFVIGK_			0	0	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.80276	989.590967	-0.70513	-0.0003496	-0.014528	-7.2031E-06	-0.71965	-0.00035681	495.802667658551	12.396	0.50541	12.396	12.281	12.786	0	750	97	0.820941264895493	0.0652636926987925	0.820941264895493	333.397190196672	0	26.5046145175884						1420	58	5	NaN	NaN	NaN	0.00072463	1	4052	96.311	73.925	1	1852000			13271	1394	11173	11460	13271	13271		
LSNLALVKPEK	11	Unmodified	_LSNLALVKPEK_			0	0	1	O14737	O14737	O14737	PDCD5	Programmed cell death protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.371538	1210.72852	1.5128	0.0009173	0.38303	0.00023226	1.8958	0.0011496	606.371680570171	6.4096	0.18621	6.4096	6.3387	6.5249	0	516	31	0.979317271586824	0.0201978857694813	0.979317271586824	396.718688572636	0	8.18210705242126						375	22	4	NaN	NaN	NaN	0.0072211	1	9765	63.212	47.332	1	139780			13272	114	11174	11461	13272	13272		
LSPADDELYQR	11	Unmodified	_LSPADDELYQR_			0	0	0	Q9BU61	Q9BU61	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.817324	1305.62009	1.332	0.00087086	0.3342	0.00021851	1.6662	0.0010894	653.817515678996	7.1102	0.24836	7.1102	6.9949	7.2432	0	546	46	0.959108205975751	0.0303366841243174	0.959108205975751	388.213636575626	0	12.2792343889561						515	29	4	NaN	NaN	NaN	0.0063502	1	12517	37.749	34.404	1	171700			13273	2741	11175	11462	13273	13273		
LSPDGHFGSK	10	Unmodified	_LSPDGHFGSK_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	348.841813	1043.50361	-1.0526	-0.00036719	1.7024	0.00059386	0.64977	0.00022667	348.842702833373	3.3947	0.062046	3.3947	3.3681	3.4301	0	894	16	0.722622390967862	0.0102765621039947	0.722622390967862	439.88504966598	0	6.25569604265456						43	8	2	NaN	NaN	NaN	0.063515	1	5310	10.702	7.5618	1	6926.4			13274	2334	11176	11463	13274	13274		
LSPEELLLR	9	Unmodified	_LSPEELLLR_			0	0	0	P13797;P13796;Q14651	P13797;Q14651	P13797	PLS3;LCP1;PLS1	Plastin-3;Plastin-2;Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.316232	1068.61791	0.55089	0.0002949	-1.3626	-0.00072944	-0.81173	-0.00043453	535.31564056592	14.187	0.35466	14.187	14.028	14.382	0	666	73	0.877991458330206	0.0487848675344291	0.877991458330206	356.204442060522	0	19.7922045325437						1617	41	4	NaN	NaN	NaN	2.5092E-05	1	5934	109.36	57.927	1	1187900			13275	683;1760	11177	11464	13275	13275		
LSPEPWTPETGLVTDAFK	18	Unmodified	_LSPEPWTPETGLVTDAFK_			0	0	0	O60488;O95573	O60488;O95573	O60488	ACSL4;ACSL3	Long-chain-fatty-acid--CoA ligase 4;Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.504206	1986.99386	1.0072	0.0010016	0.47267	0.00047007	1.4798	0.0014717	995.006004337182	16.812	0.24831	16.812	16.723	16.972	0	183	40	1.20177511391933	0.0258533799036051	1.20177511391933	484.68610175828	0	10.4268875080028						970	29	6	NaN	NaN	NaN	1.121E-05	1	31391	101.43	79.76	1	526130			13276	260;443	11178	11465	13276	13276		
LSPFMADIR	9	Unmodified	_LSPFMADIR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.276052	1048.53755	-0.72272	-0.00037963	2.0776	0.0010913	1.3549	0.00071168	525.277254699316	11.722	0.10638	11.722	11.687	11.793	0	693	40	0.85967808974117	0.0264710186728029	0.85967808974117	348.859605380777	0	10.7420082452044						157	13	2	NaN	NaN	NaN	0.054965	1	5431	34.781	17.385	1	45415			13277	792	11179	11466	13277	13277		
LSPGGYFIGTTPNSFELIR	19	Unmodified	_LSPGGYFIGTTPNSFELIR_			0	0	0	O43148	O43148	O43148	RNMT	mRNA cap guanine-N7 methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.03875	2068.06294	0.88011	0.00091095	-1.7785	-0.0018408	-0.89839	-0.00092987	1035.53856964573	17.353	0.15073	17.353	17.291	17.442	0	162	64	1.21569043230068	0.0417287938930775	1.21569043230068	490.164918945409	0	16.8249994676532						517	18	4	NaN	NaN	NaN	0.0018584	1	32848	50.641	44.437	1	124390			13278	182	11180	11467	13278	13278		
LSPPYSSPQEFAQDVGR	17	Unmodified	_LSPPYSSPQEFAQDVGR_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.455047	1876.89554	2.2828	0.0021446	0.39482	0.00037091	2.6777	0.0025155	939.455419498077	12.325	0.35475	12.325	12.103	12.458	0	270	100	1.14398322290989	0.0658355495456628	1.14398322290989	461.565843734692	0	26.5628379553381						2302	41	5	NaN	NaN	NaN	7.62E-07	1	29076	83.061	77.033	1	977360			13279	1648	11181	11468	13279	13279		
LSPQAVNSIAK	11	Unmodified	_LSPQAVNSIAK_			0	0	0	P30626	P30626	P30626	SRI	Sorcin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.324588	1126.63462	1.278	0.0007212	-2.5512	-0.0014397	-1.2732	-0.0007185	564.324658507504	6.4274	0.27487	6.4274	6.2944	6.5693	0	633	46	0.900343422309015	0.0304503749625084	0.900343422309015	365.033263597169	0	12.3457332778813						654	32	4	NaN	NaN	NaN	0.0089602	1	7441	48.785	23.965	1	320720			13280	915	11182	11469	13280	13280		
LSPQFPNEEDSFHK	14	Unmodified	_LSPQFPNEEDSFHK_			0	0	0	P49770	P49770	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.930126	1673.76855	-0.41911	-0.00023425	-0.03194	-1.7852E-05	-0.45105	-0.0002521	558.930002138258	8.1833	0.1064	8.1833	8.139	8.2454	0	738	58	0.829104889055312	0.0387637552095295	0.829104889055312	502.225688006691	0	23.4809297192917						313	13	3	NaN	NaN	NaN	0.049196	1	23726	30.068	28.811	1	70323			13281	1148	11183	11470	13281	13281		
LSQAYAISAGVSLEGQQLFQTIHK	24	Unmodified	_LSQAYAISAGVSLEGQQLFQTIHK_			0	0	0	Q3MHD2	Q3MHD2	Q3MHD2	LSM12	Protein LSM12 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.793894	2588.35985	1.6664	0.0014394	0.28684	0.00024777	1.9532	0.0016872	864.128598725952	16.608	0.11526	16.608	16.564	16.679	0	282	31	1.13599383354359	0.0199789712717875	1.13599383354359	686.123695519443	0	12.0670070531238						334	14	4	NaN	NaN	NaN	6.2395E-07	1	37195	104.47	97.037	1	83120			13282	1933	11184	11471	13282	13282		
LSQEDPDYGIR	11	Unmodified	_LSQEDPDYGIR_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.809499	1291.60444	2.1156	0.0013684	1.6788	0.0010859	3.7944	0.0024543	646.810173907553	6.1259	0.3104	6.1259	6.0283	6.3387	0	552	49	0.955063035883597	0.0323703311033066	0.955063035883597	386.620206806374	0	13.103872346994						634	36	4	NaN	NaN	NaN	0.00109	1	12118	78.932	66.336	1	232250			13283	501	11185	11472	13283	13283		
LSQELEYLTEDVK	13	Unmodified	_LSQELEYLTEDVK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.898511	1565.78247	1.787	0.0014008	1.4016	0.0010987	3.1886	0.0024996	783.899477666308	13.23	0.16848	13.23	13.176	13.345	0	369	61	1.07793901817685	0.040134443533411	1.07793901817685	435.552280617211	0	16.2167322246535						922	20	6	NaN	NaN	NaN	0.0032997	1	20529	67.548	17.251	1	279610			13284	667	11186	11473	13284	13284		
LSQETEALGR	10	Unmodified	_LSQETEALGR_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.288202	1102.56185	1.4016	0.0007741	-2.1265	-0.0011745	-0.72489	-0.00040035	552.287930606486	4.3613	0.15953	4.3613	4.2904	4.4499	0	657	43	0.884090832094921	0.028445983405885	0.884090832094921	358.538432623769	0	11.5361204239845						203	19	2	NaN	NaN	NaN	0.0022051	1	6785	62.969	43.713	1	76391			13285	1532	11187	11474	13285	13285		
LSQIGVENTEENR	13	Unmodified	_LSQIGVENTEENR_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.868076	1487.7216	1.23	0.00091622	2.0091	0.0014965	3.2392	0.0024127	744.869810015111	5.443	0.11524	5.443	5.3721	5.4873	0	462	43	1.01562323939346	0.0281989788945491	1.01562323939346	410.561644273	0	11.3993247620838						185	14	3	NaN	NaN	NaN	0.0036566	1	18165	50.116	44.965	1	37584			13286	615	11188	11475	13286	13286		
LSQILTDFPK	10	Unmodified	_LSQILTDFPK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.329339	1160.64412	0.61606	0.00035813	-1.4293	-0.00083089	-0.81324	-0.00047276	581.329042128502	12.334	0.18621	12.334	12.245	12.431	0	585	73	0.932794566565362	0.0486497581514337	0.932794566565362	378.056191542032	0	19.7174629285141						757	22	3	NaN	NaN	NaN	4.5095E-05	1	8363	130.31	90.987	1	279240			13287	2808	11189	11476	13287	13287		
LSQLEGVNVER	11	Unmodified	_LSQLEGVNVER_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.335684	1242.65681	1.9263	0.0011988	-2.2704	-0.0014129	-0.3441	-0.00021415	622.335311019241	7.3585	0.23939	7.3585	7.2964	7.5358	0	582	46	0.934820374997243	0.0303871346419722	0.934820374997243	378.583453008818	0	12.3061784568351						482	28	4	NaN	NaN	NaN	1.504E-07	1	10706	159.93	110.61	1	257940			13288	2605	11190	11477	13288	13288		
LSQLSSHDPLWR	12	Unmodified	_LSQLSSHDPLWR_			0	0	0	Q9UK99	Q9UK99	Q9UK99	FBXO3	F-box only protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.252764	1437.73646	-1.5329	-0.00073619	-1.4711	-0.0007065	-3.004	-0.0014427	480.252042469851	8.7511	0.079901	8.7511	8.7156	8.7955	0	828	22	0.767766820543916	0.0143431242639176	0.767766820543916	465.696058440837	0	8.69995453919393						99	10	2	NaN	NaN	NaN	0.0006476	1	16612	53.028	37.148	1	26331			13289	3258	11191	11478	13289	13289		
LSQNNFALGYK	11	Unmodified	_LSQNNFALGYK_			0	0	0	Q9Y277	Q9Y277	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.827495	1253.64044	1.5361	0.00096441	1.4247	0.00089449	2.9608	0.0018589	627.828253895238	8.6979	0.11535	8.6979	8.618	8.7334	0	564	49	0.946969335010767	0.0323792954262402	0.946969335010767	383.466600361652	0	13.1117005378688						439	14	5	NaN	NaN	NaN	1.6578E-07	1	11031	135.63	105.04	1	358120			13290	3334	11192	11479	13290	13290		
LSQPFESYITAPPGTAAAPAK	21	Unmodified	_LSQPFESYITAPPGTAAAPAK_			0	0	0	Q96GE9	Q96GE9	Q96GE9	TMEM261	Transmembrane protein 261	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.04931	2116.08407	1.3914	0.0014735	-2.4752	-0.0026214	-1.0839	-0.0011479	1059.54866218356	13.221	0.15963	13.221	13.159	13.318	0	159	52	1.21767724410157	0.0337619154736248	1.21767724410157	490.89168522841	0	13.6107032168568						328	19	2	NaN	NaN	NaN	5.0479E-06	1	33568	84.105	72.896	1	116850			13291	2541	11193	11480	13291	13291		
LSQVSDSVSGQTVVDPK	17	Unmodified	_LSQVSDSVSGQTVVDPK_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.449431	1744.88431	3.0651	0.0026772	-1.409	-0.0012307	1.6562	0.0014466	873.448277458966	7.3674	0.19506	7.3674	7.3053	7.5003	0	294	52	1.12800004657306	0.0339852945793708	1.12800004657306	455.36962754209	0	13.7197431698102						613	23	4	NaN	NaN	NaN	4.157E-14	1	25755	164.22	138.63	1	191780			13292	396	11194	11481	13292	13292		
LSQYLDSSQVK	11	Unmodified	_LSQYLDSSQVK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.330067	1266.64558	1.4206	0.00090115	1.0476	0.00066452	2.4682	0.0015657	634.330825909449	6.321	0.266	6.321	6.2767	6.5427	0	558	43	0.951016745717027	0.0283279591633129	0.951016745717027	385.062485920426	0	11.469865725922						407	31	3	NaN	NaN	NaN	1.6941E-05	1	11416	121.8	100.52	1	156540			13293	2420	11195	11482	13293	13293		
LSSCDSFTSTINELNHCLSLR	21	Unmodified	_LSSCDSFTSTINELNHCLSLR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.717779	2453.13151	0.9739	0.00079735	-0.22149	-0.00018134	0.75241	0.00061601	819.052135630862	16.519	0.15958	16.519	16.475	16.635	0	441	52	1.02971785871157	0.0342250726954365	1.02971785871157	622.117634055547	0	20.6775293547939						801	19	6	NaN	NaN	NaN	6.9881E-12	1	36592	138.33	131.34	1	322080			13294	565	11196	11483	13294	13294		
LSSDVLTLLIK	11	Unmodified	_LSSDVLTLLIK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.373746	1200.73294	0.37673	0.00022655	-1.3109	-0.00078831	-0.93413	-0.00056176	601.372873048814	17.681	0.15962	17.681	17.628	17.787	0	579	37	0.936845902828289	0.0243046547974741	0.936845902828289	379.549266419756	0	9.8466715509108						412	19	4	NaN	NaN	NaN	3.3914E-05	1	9498	90.263	53.693	1	253950			13295	990	11197	11484	13295	13295		
LSSEMNTSTVNSAR	14	Unmodified	_LSSEMNTSTVNSAR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.854112	1495.69367	2.0667	0.0015477	-0.58865	-0.00044081	1.4781	0.0011069	748.853865260599	4.7425	0.13303	4.7425	4.6982	4.8312	0	459	28	1.01763759082241	0.0181291645901349	1.01763759082241	411.355739382401	0	7.32828265348707						221	16	3	NaN	NaN	NaN	1.1543E-11	1	18406	165.09	140.27	1	80131			13296	784	11198	11485	13296	13296		
LSSETYSQAK	10	Unmodified	_LSSETYSQAK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.274761	1112.53497	1.3151	0.00073286	0.0017441	9.7196E-07	1.3168	0.00073383	557.274683190227	2.8094	0.29267	2.8094	2.7828	3.0755	0	675	34	0.871889544407995	0.0223767933297507	0.871889544407995	353.551123813321	0	9.07378747665052						348	34	2	NaN	NaN	NaN	0.0067053	1	7053	44.82	23.546	1	89902			13297	1581	11199	11486	13297	13297		
LSSGDPSTSPSLSQTTPSK	19	Unmodified	_LSSGDPSTSPSLSQTTPSK_			0	0	0	Q99504	Q99504	Q99504	EYA3	Eyes absent homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.960359	1875.90617	2.7906	0.0026203	-2.9258	-0.0027472	-0.13515	-0.0001269	939.459301595213	5.6115	0.062194	5.6115	5.5849	5.6471	0	309	31	1.11800162319566	0.0200009774591183	1.11800162319566	451.084737686708	0	8.06987707659636						98	8	2	NaN	NaN	NaN	0.0027111	1	29058	30.862	30.109	1	18086			13298	2645	11200	11487	13298	13298		
LSSIIDCTGTASYHGFLPVLVR	22	Unmodified	_LSSIIDCTGTASYHGFLPVLVR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	802.754382	2405.24132	1.0042	0.00080611	0.68523	0.00055007	1.6894	0.0013562	803.422231637267	16.67	0.11528	16.67	16.635	16.75	0	360	91	1.08395544855938	0.060234915653874	1.08395544855938	654.959410539843	0	36.3957992028278						495	14	4	NaN	NaN	NaN	7.9633E-09	1	36371	105.79	96.275	1	100580			13299	2149	11201	11488	13299	13299		
LSSLDNLK	8	Unmodified	_LSSLDNLK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.2531	888.491647	-1.0943	-0.00048722	-0.93364	-0.0004157	-2.0279	-0.00090293	445.252956665948	6.2057	0.11527	6.2057	6.1525	6.2678	0	771	31	0.806643990516186	0.0204346260342226	0.806643990516186	328.101354466854	0	8.31175656011726						197	14	3	NaN	NaN	NaN	0.04824	1	2132	37.722	17.064	1	66293			13300	1567	11202	11489	13300	13300		
LSSLIILMPHHVEPLER	17	Unmodified	_LSSLIILMPHHVEPLER_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	496.781665	1983.09755	0.34256	0.00017018	-0.40296	-0.00020018	-0.060399	-3.0005E-05	497.032339848589	13.496	0.16849	13.496	13.407	13.575	0	654	58	0.886123392477847	0.0386347449867347	0.886123392477847	714.766872348247	0	31.1636461384026						556	20	5	NaN	NaN	NaN	0.001941	1	31340	41.317	37.581	1	221350			13301	1164	11203	11490	13301	13301		
LSSLIILMPHHVEPLER	17	Unmodified	_LSSLIILMPHHVEPLER_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.556053	1983.09755	1.7668	0.0017536	-1.2536	-0.0012442	0.51323	0.00050941	993.056200907244	13.504	0.16846	13.504	13.425	13.593	0	123	52	1.24149774378079	0.0337156554157727	1.24149774378079	500.713406023188	0	13.5979954406719						660	20	4	NaN	NaN	NaN	0.00044249	1	31341	49.097	46.012	1	160590			13302	1164	11203	11490	13302	13302		
LSSPCIMVVNHDASSIPR	18	Unmodified	_LSSPCIMVVNHDASSIPR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.664398	1981.97137	0.26859	0.00017772	0.82106	0.00054327	1.0897	0.00072098	661.999730994026	10.312	0.12415	10.312	10.25	10.374	0	618	73	0.910492137470517	0.0487510374716118	0.910492137470517	550.821544013459	0	29.4929748728783						398	15	4	NaN	NaN	NaN	0.019556	1	31316	33.456	30.741	1	68563			13303	1581	11204	11491	13303	13303		
LSSQISAGEEK	11	Unmodified	_LSSQISAGEEK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.793318	1147.57208	1.4233	0.00081809	-0.22545	-0.00012959	1.1978	0.0006885	574.793212398563	3.5898	0.15072	3.5898	3.5366	3.6874	0	648	37	0.890187667287968	0.0243788876669334	0.890187667287968	360.836116818758	0	9.88194229301905						297	18	3	NaN	NaN	NaN	0.0024347	1	8001	78.932	66.865	1	86375			13304	2165	11205	11492	13304	13304		
LSSSFGNLDPFGTGQPLPPLQIPQQTAQHSIVLPLK	36	Unmodified	_LSSSFGNLDPFGTGQPLPPLQIPQQTAQHSIVLPLK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1276.02278	3825.04651	1.2025	0.0015344	0.16346	0.00020858	1.3659	0.001743	1276.69227897978	19.499	0.044326	19.499	19.481	19.525	0	111	55	1.24942920585258	0.0357013774013757	1.24942920585258	753.332251864486	0	21.5258286795769						343	6	6	NaN	NaN	NaN	0.0096881	1	38742	13.327	13.323	1	60540			13305	400	11206	11493	13305	13305		
LSSSIIHEIDSILGNK	16	Unmodified	_LSSSIIHEIDSILGNK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.984231	1724.93086	-1.4412	-0.00083013	0.057258	3.298E-05	-1.384	-0.00079715	576.318593090062	18.053	0.07981	18.053	18.018	18.098	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	520.618539837011	0	9.86440394208432						154	10	3	NaN	NaN	NaN	0.00099286	1	25196	63.908	59.662	1	38741			13306	1651	11207	11494	13306	13306		
LSSSIIHEIDSILGNK	16	Unmodified	_LSSSIIHEIDSILGNK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.984231	1724.93086	-2.3238	-0.0013385	2.5699	0.0014802	0.24615	0.00014178	575.986082686397	18.053	0.070933	18.053	18.027	18.098	0	753	25	0.81889964927511	0.0163317905819258	0.81889964927511	495.923225473994	0	9.89048446940222						136	9	3	NaN	NaN	NaN	0.00083021	1	25197	46.358	42.853	1	29740			13307	1651	11207	11494	13307	13307		
LSSSIIHEIDSILGNK	16	Unmodified	_LSSSIIHEIDSILGNK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.472709	1724.93086	1.1331	0.00097836	0.83357	0.00071976	1.9666	0.0016981	863.473095911747	18.053	0.097552	18.053	18.018	18.115	0	237	31	1.16593139812432	0.0199405477396462	1.16593139812432	470.725286307927	0	8.05066237943527						210	12	4	NaN	NaN	NaN	7.2713E-05	1	25198	61.042	59.332	1	46513			13308	1651	11207	11494	13308	13308		
LSSSQGTIETSLQDIDSR	18	Unmodified	_LSSSQGTIETSLQDIDSR_			0	0	0	Q9UHD2	Q9UHD2	Q9UHD2	TBK1	Serine/threonine-protein kinase TBK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.976541	1935.93853	1.9325	0.0018726	0.47463	0.0004599	2.4072	0.0023325	969.478102851781	11.536	0.14193	11.536	11.456	11.598	0	225	34	1.17390432875292	0.0219240556368867	1.17390432875292	473.532184622787	0	8.84377517591685						294	17	4	NaN	NaN	NaN	7.7052E-06	1	30437	90.376	74.847	1	61546			13309	3214	11208	11495	13309	13309		
LSSVVTQHDSK	11	Unmodified	_LSSVVTQHDSK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.814584	1199.61462	2.1548	0.0012946	-0.89343	-0.00053679	1.2614	0.00075784	600.813801682379	2.437	0.14188	2.437	2.4193	2.5611	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	382.834633625419	0	6.56088099358976						129	17	2	NaN	NaN	NaN	1.5967E-05	1	9445	96.957	71.703	1	26136			13310	1251	11209	11496	13310	13310		
LSSVVTQHDSK	11	Unmodified	_LSSVVTQHDSK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	400.878815	1199.61462	-0.43904	-0.000176	2.006	0.00080418	1.567	0.00062818	400.879657737714	2.437	0.044321	2.437	2.4281	2.4724	0	897	19	0.720567078607086	0.0123310143860629	0.720567078607086	437.891091272905	0	7.49359984146497						37	6	2	NaN	NaN	NaN	0.033864	1	9446	24.821	24.029	1	6011.1			13311	1251	11209	11496	13311	13311		
LSSWDQAETPGHTPSLR	17	Unmodified	_LSSWDQAETPGHTPSLR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.458121	1880.90169	2.6692	0.0025129	-3.9633	-0.0037313	-1.2941	-0.0012184	941.455573516715	8.0414	0.09769	8.0414	7.997	8.0947	0	291	70	1.12999890578964	0.0459548181875775	1.12999890578964	455.916444872554	0	18.5412191334858						438	12	4	NaN	NaN	NaN	0.051527	1	29161	24.164	18.822	1	82922			13312	343	11210	11497	13312	13312		
LSSWDQAETPGHTPSLR	17	Unmodified	_LSSWDQAETPGHTPSLR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.974506	1880.90169	1.2635	0.00079344	-0.16585	-0.00010415	1.0976	0.00068929	628.308840971002	8.0502	0.12431	8.0502	7.9881	8.1124	0	618	46	0.910492137470517	0.0304377111147065	0.910492137470517	551.027126531956	0	18.4208120021131						521	15	4	NaN	NaN	NaN	6.8331E-07	1	29163	82.437	59.481	1	196240			13313	343	11210	11497	13313	13313		
LSTDDLNSLIAHAHR	15	Unmodified	_LSTDDLNSLIAHAHR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.931542	1661.84853	2.5275	0.0021027	-4.8115	-0.0040028	-2.2839	-0.0019001	832.428445361447	11.394	0.09758	11.394	11.341	11.438	0	300	37	1.12400150285141	0.0239912663055373	1.12400150285141	453.93410904766	0	9.68900314430357						278	12	4	NaN	NaN	NaN	0.00078564	1	23393	41.87	38.365	1	52743			13314	1915	11211	11498	13314	13314		
LSTDDLNSLIAHAHR	15	Unmodified	_LSTDDLNSLIAHAHR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.956787	1661.84853	-0.81412	-0.0004518	-0.53963	-0.00029947	-1.3538	-0.00075128	554.956510059586	11.394	0.13302	11.394	11.35	11.483	0	747	34	0.822982596624503	0.0224515301209383	0.822982596624503	498.5464695564	0	13.6006898855966						367	16	4	NaN	NaN	NaN	2.021E-05	1	23395	68.548	49.737	1	132000			13315	1915	11211	11498	13315	13315		
LSTDHIPILYR	11	Unmodified	_LSTDHIPILYR_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.250472	1326.72959	-1.8533	-0.00082146	-0.039461	-1.7491E-05	-1.8927	-0.00083895	443.250537315145	10.516	0.14192	10.516	10.463	10.605	0	837	22	0.761618911097395	0.0143471216299236	0.761618911097395	462.334600866968	0	8.70930416210791						173	17	3	NaN	NaN	NaN	0.01727	1	13193	49.96	31.624	1	37870			13316	1558	11212	11499	13316	13316		
LSTEFNPEPWIQVDMQK	17	Unmodified	_LSTEFNPEPWIQVDMQK_			0	0	0	CON__Q28107	CON__Q28107	CON__Q28107			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.50114	2060.98773	0.66653	0.00068752	-4.4345	-0.0045742	-3.768	-0.0038867	1031.99781469932	16.298	0.133	16.298	16.218	16.351	0	156	46	1.21966378336455	0.0297735860245796	1.21966378336455	491.778237235146	0	12.0049491106029						288	16	3	NaN	NaN	NaN	0.0023667	1	32721	40.83	37.745	1	51556		+	13317	38	11213	11500	13317	13317		
LSTHELTSLLEK	12	Unmodified	_LSTHELTSLLEK_			0	0	0	Q6WCQ1	Q6WCQ1	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.589042	1369.7453	-2.6659	-0.0012199	-0.23813	-0.00010897	-2.9041	-0.0013289	457.58870316589	11.882	0.06208	11.882	11.855	11.917	0	828	16	0.767766820543916	0.01024366127849	0.767766820543916	465.915959071099	0	6.21632133775461						72	8	2	NaN	NaN	NaN	0.065276	1	14491	18.507	16.537	1	17428			13318	2091	11214	11501	13318	13318		
LSTIALALGVER	12	Unmodified	_LSTIALALGVER_			0	0	0	P30154;P30153	P30154;P30153	P30153	PPP2R1B;PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.874445	1241.73434	1.2944	0.00080493	0.93875	0.00058378	2.2331	0.0013887	621.874964745152	14.054	0.20393	14.054	14.01	14.214	0	447	64	1.02569221487577	0.0423014022048924	1.02569221487577	415.38809677075	0	17.1313564613069						568	24	4	NaN	NaN	NaN	0.00039361	1	10685	99.34	81.945	1	150130			13319	905;906	11215	11502	13319	13319		
LSTLLNHNNDTEEEER	16	Unmodified	_LSTLLNHNNDTEEEER_			0	0	0	Q6KC79	Q6KC79	Q6KC79	NIPBL	Nipped-B-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.632697	1912.87626	0.26016	0.00016615	2.3724	0.0015151	2.6326	0.0016813	638.633849248018	5.3721	0.044323	5.3721	5.3544	5.3987	0	654	10	0.886123392477847	0.00609683519304771	0.886123392477847	536.213653859892	0	3.68933525917203						32	6	2	NaN	NaN	NaN	0.054939	1	29896	19.197	18.678	1	6527.4			13320	2042	11216	11503	13320	13320		
LSTMETGTGLIR	12	Unmodified	_LSTMETGTGLIR_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.839745	1277.66494	1.1552	0.00073917	-4.3935	-0.0028112	-3.2383	-0.002072	639.83712475312	9.0706	0.15963	9.0706	9.0351	9.1947	0	549	28	0.957085760909907	0.0181994882145681	0.957085760909907	387.483778598678	0	7.36820747937844						165	19	2	NaN	NaN	NaN	0.003869	1	11696	60.547	41.292	1	70611			13321	883	11217	11504	13321	13321		
LSTPDVVSPFGTPFGSSVMNR	21	Unmodified	_LSTPDVVSPFGTPFGSSVMNR_			0	0	0	Q9BTX1	Q9BTX1	Q9BTX1	NDC1	Nucleoporin NDC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.0437	2194.07285	0.016108	1.7687E-05	1.6086	0.0017663	1.6247	0.001784	1098.54785172364	16.812	0.13303	16.812	16.741	16.874	0	135	49	1.23356193185193	0.0317476087598902	1.23356193185193	497.180115874507	0	12.7956930206852						478	16	5	NaN	NaN	NaN	0.0018065	1	34612	52.662	51.646	1	112320			13322	2740	11218	11505	13322	13322		
LSVAAQEAAR	10	Unmodified	_LSVAAQEAAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.28018	1014.54581	0.85223	0.00043317	0.22748	0.00011562	1.0797	0.0005488	508.280176899214	3.9977	0.17734	3.9977	3.9534	4.1307	0	729	34	0.835224628594324	0.0224328108600214	0.835224628594324	339.083483025309	0	9.10724538052216						258	21	3	NaN	NaN	NaN	0.0011115	1	4621	65.404	53.337	1	67718			13323	1816	11219	11506	13323	13323		
LSVACFYGGTPYGGQFER	18	Unmodified	_LSVACFYGGTPYGGQFER_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.96472	2007.9149	1.6766	0.0016849	1.0649	0.0010702	2.7415	0.0027551	1005.46725733515	14.01	0.14188	14.01	13.957	14.099	0	189	94	1.1977968526266	0.0617266512874046	1.1977968526266	483.04671410228	0	24.8930826721859						790	17	5	NaN	NaN	NaN	1.1416E-10	1	31769	98.865	91.289	1	210880			13324	3011	11220	11507	13324	13324		
LSVAPEMDIMDYCK	14	Unmodified	_LSVAPEMDIMDYCK_			0	0	0	Q96BN8	Q96BN8	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.374977	1670.7354	2.5212	0.0021086	-0.80255	-0.00067123	1.7186	0.0014374	836.374694795741	14.586	0.10642	14.586	14.542	14.648	0	339	31	1.09798411722691	0.020031295382638	1.09798411722691	443.407328209606	0	8.08939130069166						316	13	5	NaN	NaN	NaN	0.0055115	1	23634	34.779	34.16	1	109600			13325	2484	11221	11508	13325	13325		
LSVDYGK	7	Unmodified	_LSVDYGK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	391.208161	780.401769	-0.88192	-0.00034502	1.7431	0.00068192	0.86119	0.00033691	391.208801485787	4.5918	0.23948	4.5918	4.5563	4.7958	0	843	40	0.757518876820989	0.026655799678488	0.757518876820989	308.76818851695	0	10.8650269082897						582	28	4	NaN	NaN	NaN	0.027508	1	829	40.203	10.893	1	376230			13326	1447;2696;1448	11222	11509	13326	13326		
LSVEEAVAAGVVGGEIQEK	19	Unmodified	_LSVEEAVAAGVVGGEIQEK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.999288	1883.98402	1.4653	0.0013818	-2.2413	-0.0021136	-0.77603	-0.0007318	943.498613864873	14.675	0.07097	14.675	14.639	14.71	0	252	40	1.15595906938629	0.0259316233489852	1.15595906938629	466.384902339827	0	10.4624099100242						207	9	3	NaN	NaN	NaN	0.042067	1	29245	20.734	15.346	1	49520			13327	1298	11223	11510	13327	13327		
LSVEEAVAAGVVGGEIQEK	19	Unmodified	_LSVEEAVAAGVVGGEIQEK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.999288	1883.98402	0.25993	0.00024511	0.61684	0.00058168	0.87677	0.0008268	943.501148691028	14.684	0.070937	14.684	14.648	14.719	0	66	55	1.27913350869533	0.0356232085192938	1.27913350869533	516.081027307798	0	14.3725904478796						204	9	2	NaN	NaN	NaN	1.8305E-14	1	29246	141.87	111.8	1	45693			13328	1298	11223	11510	13328	13328		
LSVEEFFMDLHNFR	14	Unmodified	_LSVEEFFMDLHNFR_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.287257	1782.83994	-1.1188	-0.00066598	0.65555	0.00039024	-0.46321	-0.00027574	595.287639878184	19.587	0.053223	19.587	19.561	19.614	0	660	19	0.882057989648486	0.0121995944247819	0.882057989648486	534.033556076429	0	7.38612752201573						77	7	3	NaN	NaN	NaN	0.00020682	1	26752	65.879	59.023	1	14318			13329	270	11224	11511	13329	13329		
LSVEESEAAGDGVDTK	16	Unmodified	_LSVEESEAAGDGVDTK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.875764	1605.73698	2.4274	0.0019513	-2.323	-0.0018674	0.10437	8.3905E-05	803.874053195926	6.2323	0.19514	6.2323	6.1791	6.3742	0	423	37	1.04178812298108	0.0241272072846639	1.04178812298108	420.853327559913	0	9.74671840318433						377	23	3	NaN	NaN	NaN	2.1684E-06	1	21768	96.313	82.535	1	123890			13330	1126	11225	11512	13330	13330		
LSVISVEDPPQR	12	Unmodified	_LSVISVEDPPQR_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.364441	1338.71433	1.6129	0.0010813	-0.87552	-0.00058692	0.73742	0.00049434	670.363899978025	9.1858	0.20399	9.1858	9.1326	9.3366	0	531	43	0.969216233931596	0.028292695105214	0.969216233931596	392.203456608356	0	11.4489341269271						629	24	4	NaN	NaN	NaN	0.00049282	1	13564	50.297	38.937	1	394830			13331	1003	11226	11513	13331	13331		
LSVLLLEK	8	Unmodified	_LSVLLLEK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.799686	913.584819	-1.3404	-0.00061363	-0.39489	-0.00018078	-1.7353	-0.00079441	457.799587764317	12.68	0.15075	12.68	12.635	12.786	0	750	28	0.820941264895493	0.0183745423602224	0.820941264895493	333.777167677867	0	7.47069610047288						203	18	3	NaN	NaN	NaN	0.00775	1	2581	67.464	43.889	1	47534			13332	1932	11227	11514	13332	13332		
LSVNSHFMK	9	Unmodified	_LSVNSHFMK_			0	0	0	O14561	O14561	O14561	NDUFAB1	Acyl carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.773677	1061.5328	1.4136	0.0007517	2.1096	0.0011218	3.5231	0.0018735	531.775029310154	5.7711	0.25717	5.7711	5.6913	5.9485	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	366.951154769479	0	10.7075623474425						587	30	3	NaN	NaN	NaN	0.0064223	1	5764	69.716	46.14	1	430560			13333	104	11228	11515	13333	13333		
LSVNSVTAGDYSR	13	Unmodified	_LSVNSVTAGDYSR_			0	0	0	Q15631	Q15631	Q15631	TSN	Translin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.84133	1367.66811	1.7251	0.0011814	-1.3772	-0.00094316	0.34793	0.00023828	684.840226725742	7.8285	0.18621	7.8285	7.7842	7.9704	0	495	40	0.993446994398923	0.0262264093657728	0.993446994398923	401.921715991563	0	10.6104940837496						273	22	2	NaN	NaN	NaN	0.061499	1	14423	40.861	36.032	1	94526			13334	1857	11229	11516	13334	13334		
LSVYQAMK	8	Unmodified	_LSVYQAMK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.252046	938.489538	-0.72699	-0.00034187	-0.69667	-0.00032761	-1.4237	-0.00066948	470.251788210775	7.128	0.23061	7.128	7.0392	7.2698	0	735	28	0.831145085810763	0.0183617725733707	0.831145085810763	337.792972039091	0	7.46256921367035						262	27	3	NaN	NaN	NaN	0.017511	1	3042	40.203	31.44	1	65078			13335	1816	11230	11517	13335	13335		
LSWHLWEVLR	10	Unmodified	_LSWHLWEVLR_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.915423	1337.72444	-2.3292	-0.001041	-1.1328	-0.00050628	-3.4621	-0.0015473	446.915086291776	16.023	0.053195	16.023	15.996	16.049	0	810	16	0.78005493425781	0.0102365298339488	0.78005493425781	473.485984427451	0	6.21347701641014						43	7	2	NaN	NaN	NaN	0.0028194	1	13535	30.918	27.31	1	8047.2			13336	1227	11231	11518	13336	13336		
LSYFEHNLETWR	12	Unmodified	_LSYFEHNLETWR_			0	0	0	P36915	P36915	P36915	GNL1	Guanine nucleotide-binding protein-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.259807	1593.75759	-0.58452	-0.00031112	-0.11353	-6.0426E-05	-0.69805	-0.00037154	532.259960357512	11.376	0.088721	11.376	11.323	11.412	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	504.904926276729	0	9.88871091135223						168	11	3	NaN	NaN	NaN	0.00045207	1	21389	53.028	49.045	1	42017			13337	993	11232	11519	13337	13337		
LSYNTASNK	9	Unmodified	_LSYNTASNK_			0	0	0	P49207	P49207	P49207	RPL34	60S ribosomal protein L34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.251089	996.487624	0.93346	0.00046603	0.85881	0.00042876	1.7923	0.00089479	499.251427570349	2.6941	0.15075	2.6941	2.6587	2.8094	0	732	31	0.833184998970724	0.020400551942483	0.833184998970724	338.337452620512	0	8.28419952927487						253	18	3	NaN	NaN	NaN	0.011207	1	4204	65.156	22.321	1	60117			13338	1124	11233	11520	13338	13338		
LSYTQLLR	8	Unmodified	_LSYTQLLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.290017	992.565481	-0.45087	-0.00022421	-1.0398	-0.00051707	-1.4906	-0.00074128	497.289634653902	11.199	0.10639	11.199	11.163	11.27	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	347.460547826293	0	6.61667380868727						126	13	2	NaN	NaN	NaN	0.044329	1	4124	34.931	21.284	1	39942			13339	1816	11234	11521	13339	13339		
LSYYDGMIQLNYR	13	Unmodified	_LSYYDGMIQLNYR_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.395415	1634.77628	1.4804	0.0012115	5.4288	0.0044429	6.9092	0.0056545	818.39863421614	14.169	0.11528	14.169	14.134	14.249	0	360	31	1.08395544855938	0.0200533881003893	1.08395544855938	437.821193699222	0	8.09977783449949						163	14	4	NaN	NaN	NaN	0.00098301	1	22616	53.028	50.726	1	36287			13340	657	11235	11522	13340	13340		
LTAASVGVQGSGWGWLGFNK	20	Unmodified	_LTAASVGVQGSGWGWLGFNK_			0	0	0	P04179	P04179	P04179	SOD2	Superoxide dismutase [Mn], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.02343	2034.03231	0.88688	0.00090286	0.34067	0.00034681	1.2275	0.0012497	1018.02385383882	17.353	0.15073	17.353	17.291	17.442	0	201	58	1.18983705239708	0.0378064710753994	1.18983705239708	479.794387895734	0	15.2452242192113						350	18	2	NaN	NaN	NaN	2.2076E-05	1	32228	97.084	90.879	1	100410			13341	509	11236	11523	13341	13341		
LTADMISHPLGDFR	14	Unmodified	_LTADMISHPLGDFR_			0	0	0	Q00587	Q00587	Q00587	CDC42EP1	Cdc42 effector protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.932814	1571.77661	0.73432	0.00038547	-7.8192	-0.0041045	-7.0849	-0.0037191	525.263498385484	7.3496	0.20394	7.3496	7.2787	7.4826	0	684	40	0.86578508874114	0.0264636674362559	0.86578508874114	524.723539766469	0	16.0387484526275						401	24	4	NaN	NaN	NaN	0.07281	1	20711	21.15	16.623	1	113470			13342	1502	11237	11524	13342	13342		
LTADPDSEIATTSLR	15	Unmodified	_LTADPDSEIATTSLR_			0	0	0	O75925;O75928	O75925	O75925	PIAS1;PIAS2	E3 SUMO-protein ligase PIAS1;E3 SUMO-protein ligase PIAS2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.404492	1588.79443	1.6202	0.0012887	1.7174	0.001366	3.3376	0.0026547	795.406016493784	9.4696	0.11529	9.4696	9.4253	9.5406	0	360	43	1.08395544855938	0.0280786163643747	1.08395544855938	437.927666840994	0	11.3440113880292						263	14	3	NaN	NaN	NaN	0.016647	1	21245	54.309	43.337	1	63869			13343	369	11238	11525	13343	13343		
LTAEDLFEAR	10	Unmodified	_LTAEDLFEAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.798403	1163.58225	1.6472	0.00095996	-0.8529	-0.00049707	0.79425	0.00046289	583.299311420262	12.875	0.29264	12.875	12.777	13.07	0	594	64	0.926715457081489	0.042577380990271	0.926715457081489	375.581223867759	0	17.2558520948504						847	34	4	NaN	NaN	NaN	0.0011811	1	8437	90.761	58.809	1	314790			13344	1816	11239	11526	13344	13344		
LTAEEMDER	9	Unmodified	_LTAEEMDER_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.245146	1092.47574	1.5261	0.00083516	1.3385	0.00073248	2.8646	0.0015676	547.246158570765	4.246	0.27489	4.246	4.1484	4.4233	0	660	43	0.882057989648486	0.0284578263810398	0.882057989648486	357.754773466476	0	11.5422379818298						634	32	4	NaN	NaN	NaN	0.0011871	1	6514	90.761	81.368	1	268960			13345	1095	11240	11527	13345	13345		
LTAEFEEAQTSACR	14	Unmodified	_LTAEFEEAQTSACR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.867219	1611.71989	2.2496	0.0018151	-0.94531	-0.00076274	1.3043	0.0010524	806.867116493886	7.1102	0.23059	7.1102	7.0126	7.2432	0	432	37	1.035754240522	0.024143864458734	1.035754240522	418.402519058306	0	9.75313767892033						523	27	4	NaN	NaN	NaN	0.070311	1	21939	30.068	27.397	1	143010			13346	3158	11241	11528	13346	13346		
LTAELIEQAAQYTNAVR	17	Unmodified	_LTAELIEQAAQYTNAVR_			0	0	0	P09661	P09661	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.002173	1889.98469	0.23038	0.00014537	-2.088	-0.0013176	-1.8576	-0.0011722	631.335953536124	15.828	0.13301	15.828	15.783	15.916	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	553.463275302171	0	12.2758527190898						364	16	5	NaN	NaN	NaN	0.0017989	1	29373	52.863	49.358	1	102020			13347	609	11242	11529	13347	13347		
LTAELIEQAAQYTNAVR	17	Unmodified	_LTAELIEQAAQYTNAVR_			0	0	0	P09661	P09661	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.999622	1889.98469	1.4812	0.0014012	-2.3393	-0.0022129	-0.85805	-0.00081172	946.998825333185	15.819	0.26604	15.819	15.766	16.032	0	132	103	1.23554629282893	0.0675563268783914	1.23554629282893	498.483707800328	0	27.255739831979						1607	31	7	NaN	NaN	NaN	9.6296E-07	1	29374	137.4	119.3	1	560290			13348	609	11242	11529	13348	13348		
LTAIDILTTCAADIQR	16	Unmodified	_LTAIDILTTCAADIQR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.317105	1773.92948	0.089464	5.2991E-05	-0.78229	-0.00046336	-0.69283	-0.00041037	592.316849023628	17.725	0.15074	17.725	17.681	17.832	0	639	73	0.896281965493857	0.0487645652727416	0.896281965493857	542.666343636768	0	29.525182202025						507	18	4	NaN	NaN	NaN	0.0004876	1	26518	65.879	61.633	1	163020			13349	350	11243	11530	13349	13349		
LTAIDILTTCAADIQR	16	Unmodified	_LTAIDILTTCAADIQR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.972019	1773.92948	2.1439	0.0019038	-0.75552	-0.00067088	1.3884	0.0012329	887.970997693932	17.725	0.097546	17.725	17.681	17.779	0	318	76	1.11199926528787	0.050012800265135	1.11199926528787	448.852224707639	0	20.1873844377525						526	12	3	NaN	NaN	NaN	4.3215E-12	1	26519	166.71	157.45	1	192920			13350	350	11243	11530	13350	13350		
LTAIDILTTCAADIQR	16	Unmodified	_LTAIDILTTCAADIQR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.972019	1773.92948	1.424	0.0012645	0.19351	0.00017183	1.6175	0.0014363	887.972372985301	17.725	0.070935	17.725	17.699	17.77	0	159	49	1.21767724410157	0.0317999037994188	1.21767724410157	491.508540540226	0	12.8358515209866						225	9	3	NaN	NaN	NaN	3.3743E-07	1	26520	97.594	82.619	1	37942			13351	350	11243	11530	13351	13351		
LTALDYHNPAGFNCK	15	Unmodified	_LTALDYHNPAGFNCK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.27524	1719.80389	-0.62203	-0.00035722	-0.51946	-0.00029832	-1.1415	-0.00065553	574.275024323901	8.7245	0.21303	8.7245	8.6534	8.8665	0	750	37	0.820941264895493	0.0244942818992349	0.820941264895493	497.171435472748	0	14.8340177470151						675	25	5	NaN	NaN	NaN	0.0001497	1	25046	79.311	71.753	1	327820			13352	3324	11244	11531	13352	13352		
LTALDYHNPAGFNCK	15	Unmodified	_LTALDYHNPAGFNCK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.909221	1719.80389	2.5524	0.0021974	-1.0329	-0.00088927	1.5194	0.0013081	860.908375426439	8.7156	0.097735	8.7156	8.68	8.7778	0	312	37	1.11600111266355	0.0240077828755938	1.11600111266355	450.577483736014	0	9.69297097952523						302	12	3	NaN	NaN	NaN	4.3732E-06	1	25048	97.594	95.205	1	75423			13353	3324	11244	11531	13353	13353		
LTALQAQPGSIVPTLVLAESLPGATTR	27	Unmodified	_LTALQAQPGSIVPTLVLAESLPGATTR_			0	0	0	Q96IR7	Q96IR7	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.179637	2703.51708	0.9134	0.00082405	-2.0067	-0.0018104	-1.0933	-0.00098639	902.510772078279	19.587	0.053206	19.587	19.552	19.605	0	291	34	1.12999890578964	0.0219874545047771	1.12999890578964	682.347556796146	0	13.2770799906369						92	7	3	NaN	NaN	NaN	0.045975	1	37613	24.385	24.351	1	17903			13354	2559	11245	11532	13354	13354		
LTATPTPLGGMTGFHMQTEDR	21	Unmodified	_LTATPTPLGGMTGFHMQTEDR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.361156	2260.06164	0.79679	0.00060106	0.33998	0.00025646	1.1368	0.00085753	754.695963781441	12.378	0.070937	12.378	12.343	12.414	0	597	163	0.924688525662974	0.109174633546806	0.924688525662974	558.931441515587	0	65.9910160142869						1137	9	4	NaN	NaN	NaN	5.9353E-12	1	35276	144.38	131.69	1	254680			13355	343	11246	11533	13355	13355		
LTAVEGSMK	9	Unmodified	_LTAVEGSMK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.24696	934.479368	-0.52426	-0.00024549	1.8381	0.00086068	1.3138	0.0006152	468.24794350472	4.0509	0.15965	4.0509	3.9977	4.1573	0	777	28	0.802556497112065	0.0183975615701674	0.802556497112065	326.194219338877	0	7.4775772867261						119	19	2	NaN	NaN	NaN	0.07068	1	2963	13.995	8.6864	1	23370			13356	2063	11247	11534	13356	13356		
LTAYAMTIPFVR	12	Unmodified	_LTAYAMTIPFVR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.878673	1381.74279	0.59155	0.00040928	2.6747	0.0018506	3.2662	0.0022598	691.880680808129	16.218	0.2128	16.218	16.111	16.324	0	480	55	1.00353128488872	0.0363109867512514	1.00353128488872	405.960144277063	0	14.6889425794186						520	25	3	NaN	NaN	NaN	0.00073499	1	14890	76.85	63.052	1	119550			13357	1026	11248	11535	13357	13357		
LTCFSVYCK	9	Unmodified	_LTCFSVYCK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.272652	1176.53075	1.2985	0.00076517	0.87008	0.00051272	2.1686	0.0012779	589.273031276829	8.2544	0.12419	8.2544	8.21	8.3342	0	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	374.711417180251	0	7.39338366245329						205	15	3	NaN	NaN	NaN	0.0011281	1	8777	98.009	46.579	1	47040			13358	849	11249	11536	13358	13358		
LTCLFQIK	8	Unmodified	_LTCLFQIK_			0	0	0	Q15386	Q15386	Q15386	UBE3C	Ubiquitin-protein ligase E3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.788795	1021.56304	-0.44136	-0.00022588	-0.58061	-0.00029715	-1.022	-0.00052303	511.789283285331	12.121	0.079803	12.121	12.086	12.165	0	648	25	0.890187667287968	0.0162571004140306	0.890187667287968	361.364091207182	0	6.59943125776834						115	10	2	NaN	NaN	NaN	0.049651	1	4778	44.767	29.268	1	23161			13359	1838	11250	11537	13359	13359		
LTCLGVWLDK	10	Unmodified	_LTCLGVWLDK_			0	0	0	Q9NWT1	Q9NWT1	Q9NWT1	PAK1IP1	p21-activated protein kinase-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.823366	1203.63218	0.94342	0.00056872	1.4902	0.0008983	2.4336	0.001467	602.824383835729	13.895	0.12418	13.895	13.85	13.974	-1.7764E-15	582	31	0.934820374997243	0.0202538779292779	0.934820374997243	378.718276922425	0	8.20533436746695						187	15	2	NaN	NaN	NaN	0.00065666	1	9580	61.48	44.01	1	76872			13360	3083	11251	11538	13360	13360		
LTCLQNLK	8	Unmodified	_LTCLQNLK_			0	0	0	P08174	P08174	P08174	CD55	Complement decay-accelerating factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.276052	988.537551	0.3455	0.00017112	0.58471	0.00028959	0.93021	0.00046071	495.276286164207	6.321	0.17733	6.321	6.2767	6.454	0	669	34	0.875957769340875	0.0223674774771112	0.875957769340875	355.745454052293	0	9.08391786636793						247	21	3	NaN	NaN	NaN	0.010865	1	4024	81.32	53.616	1	90605			13361	575	11252	11539	13361	13361		
LTDCVVMR	8	Unmodified	_LTDCVVMR_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.246437	992.478322	0.94055	0.00046769	1.0832	0.00053864	2.0238	0.0010063	497.247016038222	5.9663	0.4612	5.9663	5.8775	6.3387	0	714	76	0.845418525735192	0.0509766066054806	0.845418525735192	343.32409267079	0	20.7015775944143						981	53	2	NaN	NaN	NaN	0.00030777	1	4108	117.18	90.953	1	1881800			13362	808	11253	11540	13362	13362		
LTDCVVMRDPASK	13	Unmodified	_LTDCVVMRDPASK_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.914654	1490.72213	-0.98427	-0.00049008	0.33823	0.00016841	-0.64604	-0.00032167	497.915368440053	5.9219	0.2572	5.9219	5.8066	6.0638	0	798	40	0.788241307691771	0.0266001627414024	0.788241307691771	477.953280127445	0	16.1291154245732						1002	30	6	NaN	NaN	NaN	0.00045625	1	18248	84.999	69.12	1	893460			13363	808	11254	11541	13363	13363		
LTDCVVMRDPASK	13	Unmodified	_LTDCVVMRDPASK_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.368343	1490.72213	2.4753	0.0018475	-0.56619	-0.00042258	1.9091	0.0014249	746.368802339866	5.913	0.58532	5.913	5.7623	6.3476	0	411	106	1.04982941439551	0.070444005992643	1.04982941439551	424.381491561605	0	28.4761809154929						2032	67	6	NaN	NaN	NaN	6.54E-32	1	18249	228.28	199.63	1	1576900			13364	808	11254	11541	13364	13364		
LTDDHVQFLIYQILR	15	Unmodified	_LTDDHVQFLIYQILR_			0	0	0	Q16539	Q16539	Q16539	MAPK14	Mitogen-activated protein kinase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.343871	1873.00978	-0.73324	-0.00045853	0.033525	2.0965E-05	-0.69971	-0.00043756	625.344225702913	19.002	0.035433	19.002	18.984	19.02	0	642	7	0.894250814548268	0.00406202017963642	0.894250814548268	541.214603903933	0	2.45839825561939						21	5	3	NaN	NaN	NaN	0.053421	1	29012	14.975	8.5982	1	2593.9			13365	1886	11255	11542	13365	13365		
LTDEEVEMTR	10	Unmodified	_LTDEEVEMTR_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.784635	1221.55472	1.3666	0.00083608	1.7632	0.0010787	3.1298	0.0019148	611.785688818626	5.7889	0.13298	5.7889	5.7179	5.8509	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	370.444494999747	0	9.03750606496561						373	16	4	NaN	NaN	NaN	0.00040417	1	10053	85.716	60.462	1	124350			13366	1590	11256	11543	13366	13366		
LTDELAPPKPPLPEGEVPPPRPPPPEEK	28	Unmodified	_LTDELAPPKPPLPEGEVPPPRPPPPEEK_			0	0	2	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	756.657661	3022.60154	2.0067	0.0015184	1.2569	0.00095104	3.2636	0.0024694	756.909469300525	10.924	0.30151	10.924	10.809	11.11	0	396	31	1.05987478976334	0.020089366798685	1.05987478976334	852.875269835718	0	16.1658002386141						411	35	4	NaN	NaN	NaN	0.015885	1	38265	29.291	28.556	1	74199			13367	753	11257	11544	13367	13367		
LTDIHGNVLQYHK	13	Unmodified	_LTDIHGNVLQYHK_			0	0	0	O95861	O95861	O95861	BPNT1	3(2),5-bisphosphate nucleotidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.275568	1536.80488	-1.1727	-0.00060192	1.0882	0.00055855	-0.084512	-4.3378E-05	513.276049682538	5.8687	0.1508	5.8687	5.8332	5.984	0	780	46	0.800512323802183	0.0306626079606495	0.800512323802183	485.260132281441	0	18.5872731158047						452	18	4	NaN	NaN	NaN	2.2315E-05	1	19638	99.34	87.985	1	185730			13368	459	11258	11545	13368	13368		
LTDIINNDHENVK	13	Unmodified	_LTDIINNDHENVK_			0	0	0	Q8N335	Q8N335	Q8N335	GPD1L	Glycerol-3-phosphate dehydrogenase 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.886269	1523.75799	2.5016	0.0019084	-2.1334	-0.0016276	0.36817	0.00028088	762.884660525664	5.5494	0.14191	5.5494	5.5228	5.6647	0	432	34	1.035754240522	0.022130347528504	1.035754240522	418.608265140489	0	8.94415491960171						287	17	4	NaN	NaN	NaN	0.00037496	1	19235	55.754	50.925	1	77943			13369	2243	11259	11546	13369	13369		
LTDISVTDPEK	11	Unmodified	_LTDISVTDPEK_			0	0	0	Q9Y333	Q9Y333	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.316625	1216.6187	1.4722	0.00089705	-2.04	-0.001243	-0.56779	-0.00034596	609.315489282135	7.2432	0.23055	7.2432	7.128	7.3585	0	564	31	0.946969335010767	0.0202342542182106	0.946969335010767	383.593708325941	0	8.19639276987249						491	27	4	NaN	NaN	NaN	5.2252E-05	1	9923	78.932	68.844	1	210560			13370	3368	11260	11547	13370	13370		
LTDQLPLIIVCDR	13	Unmodified	_LTDQLPLIIVCDR_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.429258	1554.84396	1.4338	0.0011161	-1.6801	-0.0013079	-0.2463	-0.00019173	778.428191341102	16.032	0.15072	16.032	15.97	16.12	0	414	58	1.04781950764076	0.0381829759272949	1.04781950764076	423.408304491634	0	15.4291736123733						619	18	5	NaN	NaN	NaN	1.0847E-16	1	20213	178.65	150.01	1	327940			13371	1503	11261	11548	13371	13371		
LTDQVMQNPR	10	Unmodified	_LTDQVMQNPR_			0	0	0	Q99733	Q99733	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.303329	1200.59211	1.7849	0.0010733	0.96677	0.00058132	2.7517	0.0016546	601.303799154442	4.9021	0.133	4.9021	4.8401	4.9731	0	564	55	0.946969335010767	0.0364418454762743	0.946969335010767	383.651126656506	0	14.7638942017653						276	16	2	NaN	NaN	NaN	4.3419E-05	1	9475	114.64	85.537	1	136220			13372	2670	11262	11549	13372	13372		
LTDYISK	7	Unmodified	_LTDYISK_			0	0	0	O75915	O75915	O75915	ARL6IP5	PRA1 family protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.229094	838.443634	-0.87722	-0.00036863	-0.20251	-8.5101E-05	-1.0797	-0.00045373	420.229199486278	4.9287	0.1241	4.9287	4.8844	5.0085	0	777	40	0.802556497112065	0.0265742584315366	0.802556497112065	326.735062424957	0	10.8188545214813						248	15	3	NaN	NaN	NaN	0.061232	1	1417	49.325	0.26699	1	77977			13373	368	11263	11550	13373	13373		
LTEAMGGGWQQEQFEHYK	18	Unmodified	_LTEAMGGGWQQEQFEHYK_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.658189	2137.95274	1.7912	0.0012783	-0.78493	-0.00056017	1.0063	0.00071813	713.99170661013	9.7534	0.088679	9.7534	9.7179	9.8066	0	564	31	0.946969335010767	0.020242660886354	0.946969335010767	572.598714122293	0	12.2400178816858						271	11	5	NaN	NaN	NaN	3.5445E-14	1	33847	135.21	120.82	1	75326			13374	3209	11264	11551	13374	13374		
LTEDLEYHELLDR	13	Unmodified	_LTEDLEYHELLDR_			0	0	0	P22059	P22059	P22059	OSBP	Oxysterol-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.273782	1644.79952	0.063248	3.474E-05	0.43648	0.00023975	0.49973	0.00027449	549.273660434391	11.039	0.14189	11.039	10.995	11.137	0	696	43	0.857641857947968	0.0285131915088889	0.857641857947968	519.586829097003	0	17.2742020765946						367	17	4	NaN	NaN	NaN	0.0021651	1	22883	63.212	57.716	1	109130			13375	798	11265	11552	13375	13375		
LTEGCSFR	8	Unmodified	_LTEGCSFR_			0	0	0	P42677;Q71UM5	P42677;Q71UM5	P42677	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.226559	968.438566	1.3474	0.00065381	1.117	0.00054198	2.4644	0.0011958	485.227460319737	4.042	0.21285	4.042	3.9888	4.2017	0	732	43	0.833184998970724	0.0285607760310633	0.833184998970724	338.470858239776	0	11.602453701363						676	25	5	NaN	NaN	NaN	0.0028401	1	3589	75.243	61.691	1	740070			13376	1052;2105	11266	11553	13376	13376		
LTELGTVDPK	10	Unmodified	_LTELGTVDPK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.797872	1071.58119	1.2124	0.0006508	1.2392	0.00066522	2.4516	0.001316	536.798582426241	6.4983	0.24827	6.4983	6.4008	6.6491	0	627	52	0.90440375274676	0.0345200008308083	0.90440375274676	366.907085378144	0	14.0044010803983						698	29	3	NaN	NaN	NaN	0.00085523	1	5999	69.915	33.345	1	332440			13377	1095	11267	11554	13377	13377		
LTELMFEHYNIPAFFLCK	18	Unmodified	_LTELMFEHYNIPAFFLCK_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.375966	2272.10607	-0.46802	-0.00035494	0.41282	0.00031307	-0.055202	-4.1864E-05	758.710357362369	19.064	0.053176	19.064	19.038	19.091	0	600	22	0.922661313351899	0.0141924536519389	0.922661313351899	557.688034868275	0	8.57840409321477						142	7	4	NaN	NaN	NaN	0.00047478	1	35384	49.487	46.592	1	29684			13378	470	11268	11555	13378	13378		
LTELQLR	7	Unmodified	_LTELQLR_			0	0	0	Q7Z7H5	Q7Z7H5	Q7Z7H5	TMED4	Transmembrane emp24 domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.763635	871.512717	-1.4776	-0.00064535	-1.1005	-0.00048064	-2.578	-0.001126	436.763686497876	7.3408	0.15073	7.3408	7.2964	7.4472	0	750	34	0.820941264895493	0.0224577750816375	0.820941264895493	334.015711437616	0	9.13737686477975						273	18	3	NaN	NaN	NaN	0.0068453	1	1884	73.637	12.143	1	82899			13379	2153	11269	11556	13379	13379		
LTELSMQDEELMK	13	Unmodified	_LTELSMQDEELMK_			0	0	0	P62072	P62072	P62072	TIMM10	Mitochondrial import inner membrane translocase subunit Tim10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.873124	1565.7317	1.9007	0.0014899	0.61887	0.00048512	2.5195	0.001975	783.873844175629	11.483	0.22177	11.483	11.403	11.624	0	369	52	1.07793901817685	0.034097816394167	1.07793901817685	435.552407419041	0	13.7775753245581						662	26	5	NaN	NaN	NaN	0.00010402	1	20519	88.734	79.928	1	222700			13380	1363	11270	11557	13380	13380		
LTELYNAYVETQDQLLLEK	19	Unmodified	_LTELYNAYVETQDQLLLEK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1142.09137	2282.16819	-0.9053	-0.0010339	-1.9174	-0.0021899	-2.8227	-0.0032238	1142.59123049564	16.98	0.088662	16.98	16.945	17.034	0	66	28	1.27913350869533	0.0178055038448577	1.27913350869533	515.422257006286	0	7.17466387712039						110	11	3	NaN	NaN	NaN	5.4847E-05	1	35489	81.409	71.896	1	15470			13381	667	11271	11558	13381	13381		
LTEMETLQSQLMAEK	15	Unmodified	_LTEMETLQSQLMAEK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.431338	1750.84812	2.6884	0.0023562	1.523	0.0013348	4.2113	0.0036909	876.432928801651	13.77	0.25713	13.77	13.7	13.957	0	330	52	1.10399226369747	0.0340367978310923	1.10399226369747	445.665793892723	0	13.7401656023893						710	30	3	NaN	NaN	NaN	4.9272E-17	1	25914	180.17	165.19	1	258300			13382	972	11272	11559	13382	13382		
LTEQLAGPLR	10	Unmodified	_LTEQLAGPLR_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.319306	1096.62406	0.39643	0.00021777	-0.21024	-0.00011549	0.18619	0.00010228	549.319007342651	8.1922	0.15087	8.1922	8.1036	8.2544	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	359.386737224545	0	9.89288027093153						305	18	3	NaN	NaN	NaN	9.0201E-08	1	6634	138.26	116.98	1	65459			13383	1047	11273	11560	13383	13383		
LTEQPELANK	10	Unmodified	_LTEQPELANK_			0	0	0	P00374	P00374	P00374	DHFR	Dihydrofolate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.806228	1141.5979	1.7678	0.0010108	-2.1273	-0.0012164	-0.35951	-0.00020557	571.805802388326	4.4411	0.16847	4.4411	4.3879	4.5563	0	624	31	0.906433495720521	0.0202988394656143	0.906433495720521	367.444174268154	0	8.22861284502244						293	20	3	NaN	NaN	NaN	0.016322	1	7833	60.892	41.636	1	86903			13384	473	11274	11561	13384	13384		
LTESGLSMVDWHLIK	15	Unmodified	_LTESGLSMVDWHLIK_			0	0	0	Q7KZN9	Q7KZN9	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.971157	1727.89164	-0.24583	-0.00014184	0.22403	0.00012926	-0.021807	-1.2582E-05	576.971500599926	14.959	0.079817	14.959	14.923	15.003	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	552.612533066044	0	11.0581073512146						187	10	4	NaN	NaN	NaN	0.047444	1	25270	15.616	13.774	1	40749			13385	2109	11275	11562	13385	13385		
LTESPCALVASQYGWSGNMER	21	Unmodified	_LTESPCALVASQYGWSGNMER_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1178.53846	2355.06237	1.4758	0.0017393	-0.5144	-0.00060623	0.96144	0.0011331	1179.03973362818	14.036	0.16847	14.036	13.939	14.107	0	81	91	1.2692388538616	0.0594371415479429	1.2692388538616	511.339415769044	0	23.9454954767884						1457	20	5	NaN	NaN	NaN	5.0139E-16	1	36093	145.18	139.07	1	365850			13386	700	11276	11563	13386	13386		
LTESVDVLMPNVGEIVGGSMR	21	Unmodified	_LTESVDVLMPNVGEIVGGSMR_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.0585	2202.10244	0.3891	0.00042881	-0.98016	-0.0010802	-0.59107	-0.00065139	1102.55881184942	18.55	0.12419	18.55	18.479	18.603	0	99	61	1.25735632164274	0.0396084576339566	1.25735632164274	506.758690818386	0	15.9635974229606						450	15	4	NaN	NaN	NaN	0.0013012	1	34706	41.499	39.397	1	89161			13387	229	11277	11564	13387	13387		
LTEVLTDSHVK	11	Unmodified	_LTEVLTDSHVK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.340435	1240.66632	1.8219	0.001132	-0.15521	-9.6441E-05	1.6666	0.0010356	621.340169691812	5.5051	0.1684	5.5051	5.4697	5.6381	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.428601946376	0	8.99600334657038						351	20	4	NaN	NaN	NaN	2.9061E-05	1	10646	102.55	35.082	1	122740			13388	2420	11278	11565	13388	13388		
LTEVPVEPVLTVHPESK	17	Unmodified	_LTEVPVEPVLTVHPESK_			0	0	0	Q9H307	Q9H307	Q9H307	PNN	Pinin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.34717	1873.01968	1.3486	0.00084336	-0.50033	-0.00031288	0.8483	0.00053048	625.346395848971	11.154	0.1596	11.154	11.083	11.243	0	564	37	0.946969335010767	0.0242878309785073	0.946969335010767	573.120658482293	0	14.6993753323073						581	19	5	NaN	NaN	NaN	0.00069556	1	29013	84.102	67.814	1	227770			13389	2877	11279	11566	13389	13389		
LTEVQDDKEEEEEENPLLVPLEEK	24	Unmodified	_LTEVQDDKEEEEEENPLLVPLEEK_			0	0	1	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	952.129113	2853.36551	2.0111	0.0019148	-1.0003	-0.00095241	1.0108	0.00096239	952.462050956969	13.567	0.13301	13.567	13.504	13.637	0	489	73	0.997481546940468	0.0483879041747655	0.997481546940468	602.165340642346	0	29.2110855481378						718	16	4	NaN	NaN	NaN	5.6067E-10	1	38006	75.686	72.289	1	160780			13390	2220	11280	11567	13390	13390		
LTEVSISSDAFFPFR	15	Unmodified	_LTEVSISSDAFFPFR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.435595	1714.85664	1.9337	0.0016599	-0.27376	-0.00023501	1.6599	0.0014249	858.93776242524	17.982	0.20392	17.982	17.894	18.098	0	336	58	1.09998710857178	0.0380620944866981	1.09998710857178	444.122184805993	0	15.3676533388403						1128	24	7	NaN	NaN	NaN	0.00076467	1	24905	76.255	63.572	1	334740			13391	929	11281	11568	13391	13391		
LTFDEEAYK	9	Unmodified	_LTFDEEAYK_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.266404	1114.51826	0.82519	0.00046067	1.3504	0.00075391	2.1756	0.0012146	558.266881877305	8.1036	0.071035	8.1036	8.068	8.139	0	633	55	0.900343422309015	0.0365429879949484	0.900343422309015	365.081212338436	0	14.8178550862848						222	9	2	NaN	NaN	NaN	0.023342	1	7103	48.157	31.7	1	107200			13392	2748	11282	11569	13392	13392		
LTFDSSFSPNTGK	13	Unmodified	_LTFDSSFSPNTGK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.838256	1399.66196	2.0284	0.0014216	0.73273	0.00051353	2.7612	0.0019351	700.838895483621	10.126	0.45219	10.126	9.9662	10.418	0	501	67	0.98941132619024	0.0443801033988019	0.98941132619024	400.197413151487	0	17.9508785734085						1558	52	4	NaN	NaN	NaN	7.9776E-12	1	15438	167.76	138	1	1492300			13393	794	11283	11570	13393	13393		
LTFDTTFSPNTGK	13	Unmodified	_LTFDTTFSPNTGK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.853906	1427.69326	2.1559	0.0015411	-0.56199	-0.00040174	1.5939	0.0011394	714.853948628306	11.128	0.3636	11.128	10.986	11.35	0	483	79	1.00151498427745	0.0524057501143701	1.00151498427745	405.015290631233	0	21.1930230166574						1610	42	6	NaN	NaN	NaN	3.1565E-05	1	16312	127.03	114.43	1	1322000			13394	1070	11284	11571	13394	13394		
LTFGESLMTHAMTFTAVSEK	20	Unmodified	_LTFGESLMTHAMTFTAVSEK_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.358752	2200.05443	0.21054	0.00015461	-0.80381	-0.00059029	-0.59328	-0.00043568	734.357568266019	16.573	0.079799	16.573	16.546	16.626	0	462	25	1.01562323939346	0.0161159257109076	1.01562323939346	613.999491714291	0	9.74295369699496						140	10	4	NaN	NaN	NaN	0.056491	1	34675	18.361	13.279	1	22293			13395	1706	11285	11572	13395	13395		
LTFLNSFK	8	Unmodified	_LTFLNSFK_			0	0	0	Q93050;Q9Y487	Q93050;Q9Y487	Q93050	ATP6V0A1;ATP6V0A2	V-type proton ATPase 116 kDa subunit a isoform 1;V-type proton ATPase 116 kDa subunit a isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.273835	968.533118	-0.83647	-0.00040592	-0.8807	-0.00042738	-1.7172	-0.0008333	485.273295837896	12.644	0.12413	12.644	12.591	12.715	0	720	31	0.841341816837976	0.0203863795531677	0.841341816837976	341.784004715426	0	8.2816975287372						198	15	3	NaN	NaN	NaN	0.014287	1	3602	41.025	26.489	1	45935			13396	2454;3405	11286	11573	13396	13396		
LTFLYLANDVIQNSK	15	Unmodified	_LTFLYLANDVIQNSK_			0	0	0	Q9NQG5;Q96P16	Q9NQG5;Q96P16	Q9NQG5	RPRD1B;RPRD1A	Regulation of nuclear pre-mRNA domain-containing protein 1B;Regulation of nuclear pre-mRNA domain-containing protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.972345	1737.93014	1.2262	0.0010667	0.12521	0.00010893	1.3514	0.0011757	869.972221144585	18.461	0.071018	18.461	18.435	18.506	0	222	37	1.17589687683038	0.0239122235316391	1.17589687683038	474.720374913857	0	9.65358437770658						206	9	4	NaN	NaN	NaN	8.382E-10	1	25552	140.01	119.67	1	49173			13397	3000;2592	11287	11574	13397	13397		
LTFPEQSVPGALQFR	15	Unmodified	_LTFPEQSVPGALQFR_			0	0	0	Q9Y6K5	Q9Y6K5	Q9Y6K5	OAS3	2-5-oligoadenylate synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.451579	1688.88861	1.7643	0.0014916	-2.2785	-0.0019263	-0.51419	-0.00043473	845.449369808611	14.985	0.13304	14.985	14.914	15.047	0	336	31	1.09998710857178	0.0200285363602049	1.09998710857178	444.176939679512	0	8.08756204269201						189	16	3	NaN	NaN	NaN	0.0052499	1	24187	55.578	37.48	1	51371			13398	3468	11288	11575	13398	13398		
LTFSCLGGSDNFK	13	Unmodified	_LTFSCLGGSDNFK_			0	0	0	Q15185	Q15185	Q15185	PTGES3	Prostaglandin E synthase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.340109	1444.66566	1.5286	0.0011057	1.571	0.0011364	3.0995	0.002242	723.341245264329	11.731	0.34585	11.731	11.651	11.997	0	462	103	1.01562323939346	0.0684643975018376	1.01562323939346	410.674395341392	0	27.6840603443373						1892	40	5	NaN	NaN	NaN	5.4578E-05	1	16808	108.93	95.655	1	2078900			13399	1823	11289	11576	13399	13399		
LTFYALSHMINNYHK	15	Unmodified	_LTFYALSHMINNYHK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.978535	1850.91377	0.17436	0.00010775	-0.56477	-0.00034902	-0.39041	-0.00024127	618.646780032588	13.398	0.13305	13.398	13.327	13.46	0	627	49	0.90440375274676	0.0324691438304571	0.90440375274676	547.407311461228	0	19.6525574730285						332	16	4	NaN	NaN	NaN	0.019549	1	28523	48.701	45.986	1	71818		+	13400	22	11290	11577	13400	13400		
LTGDVEELEIQEK	13	Unmodified	_LTGDVEELEIQEK_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.882861	1501.75117	2.1292	0.0016009	0.13325	0.00010019	2.2624	0.0017011	751.883964541304	9.7445	0.21283	9.7445	9.6913	9.9041	0	438	40	1.03173026378327	0.0261576594975734	1.03173026378327	417.036940627426	0	10.5732192548473						453	25	4	NaN	NaN	NaN	0.00016467	1	18575	84.309	71.135	1	133280			13401	3261	11291	11578	13401	13401		
LTGEDVFGITVPLITSTTGAK	21	Unmodified	_LTGEDVFGITVPLITSTTGAK_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.5779	2119.14125	0.16796	0.00017814	5.4514	0.0057816	5.6193	0.0059597	1060.58474570454	19.339	0.11537	19.339	19.286	19.401	0	147	31	1.22562176648663	0.0198422518386323	1.22562176648663	494.089748944733	0	7.99908544179311						172	14	2	NaN	NaN	NaN	0.042236	1	33608	36.96	34.719	1	47729			13402	3360	11292	11579	13402	13402		
LTGEEVNSCVEVLLEEAK	18	Unmodified	_LTGEEVNSCVEVLLEEAK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.00117	2017.98779	0.57409	0.00057983	-0.77351	-0.00078125	-0.19942	-0.00020142	1010.00176734128	17.043	0.14188	17.043	16.972	17.114	0	195	67	1.19381749893585	0.0437729153486508	1.19381749893585	481.425428564943	0	17.6521072526123						462	17	4	NaN	NaN	NaN	0.0020177	1	31955	62.711	50.028	1	85250			13403	1137	11293	11580	13403	13403		
LTGMAFR	7	Unmodified	_LTGMAFR_			0	0	0	P04406;O14556	P04406	P04406	GAPDH;GAPDHS	Glyceraldehyde-3-phosphate dehydrogenase;Glyceraldehyde-3-phosphate dehydrogenase, testis-specific	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	398.212724	794.410894	-1.7047	-0.00067883	-1.6141	-0.00064277	-3.3188	-0.0013216	398.212356810658	6.7289	0.24824	6.7289	6.6934	6.9417	0	840	37	0.759569036796863	0.024600209838444	0.759569036796863	309.509724346754	0	10.0241107748122						378	29	4	NaN	NaN	NaN	0.043568	1	943	39.761	27.209	1	150320			13404	513	11294	11581	13404	13404		
LTGSSAQEEASGVALGEAPDHSYESLR	27	Unmodified	_LTGSSAQEEASGVALGEAPDHSYESLR_			0	0	0	Q13011	Q13011	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	921.101892	2760.28385	2.2786	0.0020989	0.075208	6.9274E-05	2.3539	0.0021681	921.43587715591	10.01	0.062048	10.01	9.9839	10.046	0	231	55	1.16991841121525	0.0358880628885423	1.16991841121525	706.378522278894	0	21.6686536322884						332	8	4	NaN	NaN	NaN	7.3491E-07	1	37787	68.13	58.975	1	69462			13405	1618	11295	11582	13405	13405		
LTGVFAPR	8	Unmodified	_LTGVFAPR_			0	0	0	P62701;Q8TD47;P22090	P62701	P62701	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.75307	859.491587	-1.4736	-0.00063475	-0.57487	-0.00024763	-2.0484	-0.00088237	430.752911457845	7.1989	0.26599	7.1989	7.1457	7.4117	-8.8818E-16	777	40	0.802556497112065	0.0265742584315366	0.802556497112065	326.60629480698	0	10.8145907668796						434	31	3	NaN	NaN	NaN	0.0013025	1	1713	78.178	50.474	1	156500			13406	1394	11296	11583	13406	13406		
LTGVSISQVNHK	12	Unmodified	_LTGVSISQVNHK_			0	0	0	O75955	O75955	O75955	FLOT1	Flotillin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.859326	1281.7041	1.3865	0.00088993	-0.11328	-7.2712E-05	1.2732	0.00081722	641.858968611868	5.3189	0.097515	5.3189	5.2923	5.3898	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	403.008078597033	0	6.53346264431082						135	12	3	NaN	NaN	NaN	0.003869	1	11821	68.49	54.035	1	28403			13407	373	11297	11584	13407	13407		
LTHDVELNLDYER	13	Unmodified	_LTHDVELNLDYER_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.60201	1615.7842	-0.56437	-0.00030453	-0.62492	-0.00033721	-1.1893	-0.00064174	539.601775765667	9.2125	0.25717	9.2125	9.1681	9.4253	0	747	34	0.822982596624503	0.0224577750816375	0.822982596624503	498.663833514205	0	13.6076756183446						522	30	5	NaN	NaN	NaN	0.00025724	1	22072	94.66	71.607	1	185510			13408	495	11298	11585	13408	13408		
LTHDVELNLDYER	13	Unmodified	_LTHDVELNLDYER_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.60201	1615.7842	0.072796	3.9281E-05	-0.19209	-0.00010365	-0.11929	-6.4371E-05	539.60203249052	9.2125	0.088676	9.2125	9.1858	9.2745	0	690	52	0.86171403876517	0.0346255696673232	0.86171403876517	522.132091424769	0	20.9804184379782						229	11	3	NaN	NaN	NaN	0.029932	1	22073	33.1	29.998	1	49578			13409	495	11298	11585	13409	13409		
LTHDVELNLDYER	13	Unmodified	_LTHDVELNLDYER_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.899377	1615.7842	2.6851	0.002172	4.8125	0.0038929	7.4976	0.0060648	809.405628284187	9.2303	0.21287	9.2303	9.177	9.3898	0	351	55	1.08996939197032	0.0360762165045725	1.08996939197032	440.293772744345	0	14.5730087359852						477	25	3	NaN	NaN	NaN	0.00051125	1	22076	65.408	46.084	1	128590			13410	495	11298	11585	13410	13410		
LTHVDSPLEAPAGPLGQVK	19	Unmodified	_LTHVDSPLEAPAGPLGQVK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.686185	1928.03673	0.53249	0.00034275	-0.42048	-0.00027066	0.11201	7.2097E-05	644.020390579009	10.8	0.16846	10.8	10.72	10.888	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	526.339513997069	0	12.3116056588658						458	20	4	NaN	NaN	NaN	1.5065E-05	1	30253	55.604	53.893	1	107760			13411	2726	11299	11586	13411	13411		
LTHYDHVLIELTQAGLK	17	Unmodified	_LTHYDHVLIELTQAGLK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.02643	1950.05746	1.2168	0.00079214	-1.1072	-0.00072082	0.10955	7.1323E-05	651.359623075653	13.886	0.097555	13.886	13.85	13.948	0	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	558.247013249128	0	9.81303716129355						239	12	4	NaN	NaN	NaN	0.0010595	1	30725	77.157	76.538	1	77447			13412	1757	11300	11587	13412	13412		
LTHYDHVLIELTQAGLK	17	Unmodified	_LTHYDHVLIELTQAGLK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.036007	1950.05746	2.5022	0.0024422	-1.7013	-0.0016606	0.80081	0.00078162	976.535589823562	13.886	0.12415	13.886	13.841	13.966	0	171	67	1.20972836110953	0.0437488875124437	1.20972836110953	487.957824649587	0	17.6466161063067						681	15	5	NaN	NaN	NaN	3.4117E-10	1	30726	73.502	66.98	1	207360			13413	1757	11300	11587	13413	13413		
LTHYHEGLPTTR	12	Unmodified	_LTHYHEGLPTTR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.58088	1423.72081	-0.73994	-0.0003519	3.1363	0.0014916	2.3964	0.0011397	475.582357975146	3.6431	0.18617	3.6431	3.5633	3.7494	0	795	40	0.790287188799094	0.0265890562583758	0.790287188799094	479.400878870765	0	16.1293478108628						364	22	4	NaN	NaN	NaN	0.00081242	1	16201	64.906	59.04	1	97985			13414	1531	11301	11588	13414	13414		
LTHYHEGLPTTWGTR	15	Unmodified	_LTHYHEGLPTTWGTR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.297032	1767.86927	-0.6342	-0.00037436	1.5375	0.00090758	0.9033	0.00053322	590.297938383702	7.0392	0.12422	7.0392	6.9771	7.1014	0	741	25	0.827064408645228	0.016324979319214	0.827064408645228	500.770903020262	0	9.88444739009032						275	15	4	NaN	NaN	NaN	2.1226E-09	1	26342	140.01	137.34	1	69993			13415	268	11302	11589	13415	13415		
LTHYHEGLPTTWGTR	15	Unmodified	_LTHYHEGLPTTWGTR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.94191	1767.86927	2.357	0.0020858	-1.0417	-0.00092183	1.3153	0.001164	884.94038323489	7.0303	0.097633	7.0303	6.986	7.0836	0	288	28	1.13199748998575	0.017989734652339	1.13199748998575	456.936543847129	0	7.26164788304447						166	12	3	NaN	NaN	NaN	0.0082623	1	26343	35.845	34.964	1	31444			13416	268	11302	11589	13416	13416		
LTIAEER	7	Unmodified	_LTIAEER_			0	0	0	P62701;Q8TD47	P62701	P62701	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.232168	830.449782	-0.5216	-0.00021711	0.51785	0.00021554	-0.003757	-1.5638E-06	416.232492973221	4.3701	0.26599	4.3701	4.3258	4.5918	0	783	46	0.798467866007927	0.0306711433873714	0.798467866007927	325.120844148692	0	12.4887029943529						512	31	4	NaN	NaN	NaN	0.021356	1	1322	63.301	14.243	1	381660			13417	1394	11303	11590	13417	13417		
LTIAEERDK	9	Unmodified	_LTIAEERDK_			0	0	1	P62701;Q8TD47	P62701	P62701	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.793121	1073.57169	2.0775	0.0011172	-1.6158	-0.00086896	0.46168	0.00024829	537.79236084404	3.0488	0.15074	3.0488	3.0222	3.173	0	642	31	0.894250814548268	0.020312920651839	0.894250814548268	362.77962178519	0	8.24054454470831						215	18	2	NaN	NaN	NaN	0.021723	1	6045	105.81	73.681	1	53738			13418	1394	11304	11591	13418	13418		
LTIAEERDK	9	Unmodified	_LTIAEERDK_			0	0	1	P62701;Q8TD47	P62701	P62701	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	358.864506	1073.57169	-0.11529	-4.1375E-05	1.172	0.00042058	1.0567	0.00037921	358.864862814814	3.0577	0.097509	3.0577	3.0311	3.1286	0	903	16	0.716455593386714	0.0102794305336308	0.716455593386714	435.972306673551	0	6.25516372878479						78	12	2	NaN	NaN	NaN	0.068794	1	6046	34.931	23.571	1	14280			13419	1394	11304	11591	13419	13419		
LTIEFTEEYPNKPPTVR	17	Unmodified	_LTIEFTEEYPNKPPTVR_			0	0	1	P49459	P49459	P49459	UBE2A	Ubiquitin-conjugating enzyme E2 A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.53075	2033.04696	0.57719	0.00058731	0.26377	0.0002684	0.84096	0.0008557	1017.53159831912	11.598	0.079872	11.598	11.545	11.624	0	114	22	1.24744674793813	0.0138791080721179	1.24744674793813	503.026792208226	0	5.59668236240816						106	10	3	NaN	NaN	NaN	0.066961	1	32208	24.164	23.597	1	17141			13420	1134	11305	11592	13420	13420		
LTIEFTEEYPNKPPTVR	17	Unmodified	_LTIEFTEEYPNKPPTVR_			0	0	1	P49459	P49459	P49459	UBE2A	Ubiquitin-conjugating enzyme E2 A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.689595	2033.04696	0.66689	0.00045261	0.48798	0.00033119	1.1549	0.0007838	679.024306347477	11.58	0.16854	11.58	11.483	11.651	0	570	49	0.942920803299286	0.0324017225316988	0.942920803299286	570.340377994601	0	19.5986880464867						401	20	4	NaN	NaN	NaN	1.1759E-05	1	32209	80.815	70.794	1	97875			13421	1134	11305	11592	13421	13421		
LTIHGDLYYEGK	12	Unmodified	_LTIHGDLYYEGK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.241753	1407.70343	-1.2914	-0.00060727	-0.4318	-0.00020305	-1.7232	-0.00081033	470.241471412372	7.8197	0.18621	7.8197	7.7842	7.9704	0	801	28	0.78619514174348	0.0184180594239544	0.78619514174348	476.970727232185	0	11.1739118333492						286	22	3	NaN	NaN	NaN	0.015354	1	15697	44.598	35.62	1	69785			13422	1667	11306	11593	13422	13422		
LTIIVSDPSHCNVLR	15	Unmodified	_LTIIVSDPSHCNVLR_			0	0	0	P78346	P78346	P78346	RPP30	Ribonuclease P protein subunit p30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.310173	1722.90869	0.10459	6.0173E-05	-1.1481	-0.00066051	-1.0435	-0.00060034	575.643560330741	10.915	0.13303	10.915	10.844	10.977	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	521.856386723848	0	11.0952470252183						236	16	3	NaN	NaN	NaN	0.00010054	1	25135	60	51.526	1	54577			13423	1458	11307	11594	13423	13423		
LTISSPLEAHK	11	Unmodified	_LTISSPLEAHK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.227556	1194.66084	-1.1408	-0.00045544	-0.34331	-0.00013706	-1.4841	-0.0005925	399.227424192229	7.6688	0.1508	7.6688	7.6068	7.7576	0	840	34	0.759569036796863	0.0225517630193636	0.759569036796863	461.614456974849	0	13.7054294418179						204	18	2	NaN	NaN	NaN	0.054502	1	9290	12.596	1.8938	1	47370			13424	1841	11308	11595	13424	13424		
LTISSPLEAHK	11	Unmodified	_LTISSPLEAHK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.337695	1194.66084	2.1353	0.0012777	1.0567	0.00063229	3.1921	0.0019099	598.338227605172	7.6865	0.17742	7.6865	7.6068	7.7842	0	513	40	0.981336640919867	0.0262518066023084	0.981336640919867	397.596978235873	0	10.6361451749387						409	21	3	NaN	NaN	NaN	0.00025744	1	9291	78.816	41.093	1	114580			13425	1841	11308	11595	13425	13425		
LTLAELNQILYR	12	Unmodified	_LTLAELNQILYR_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.919384	1445.82421	0.99488	0.00072022	0.069525	5.033E-05	1.0644	0.00077055	723.919489550092	17.628	0.12411	17.628	17.583	17.708	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	421.251154277636	0	8.94478883623583						289	15	4	NaN	NaN	NaN	4.5505E-11	1	16870	130.79	114.91	1	83556			13426	971	11309	11596	13426	13426		
LTLDTIFVPNTGK	13	Unmodified	_LTLDTIFVPNTGK_			0	0	0	Q9Y277	Q9Y277	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.898117	1417.78168	1.5983	0.0011346	-0.452	-0.00032087	1.1463	0.00081377	709.897925920385	15.101	0.21279	15.101	15.038	15.251	0	462	61	1.01562323939346	0.0402787014573001	1.01562323939346	410.74825491804	0	16.2899052446173						763	25	4	NaN	NaN	NaN	7.5416E-24	1	16036	187.85	173.85	1	530130			13427	3334	11310	11597	13427	13427		
LTLEDLEDSWDR	12	Unmodified	_LTLEDLEDSWDR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.351728	1490.6889	0.13209	9.8582E-05	2.341	0.0017472	2.4731	0.0018458	746.353072328628	16.794	0.11528	16.794	16.759	16.874	0	423	40	1.04178812298108	0.0261432202901304	1.04178812298108	421.130966873992	0	10.5680986326453						334	14	4	NaN	NaN	NaN	1.216E-07	1	18244	141.29	100.91	1	105170			13428	2064	11311	11598	13428	13428		
LTLEQGQQLVAEGHPGASQASAR	23	Unmodified	_LTLEQGQQLVAEGHPGASQASAR_			0	0	0	O15020	O15020	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.403288	2347.18804	1.6266	0.0012743	0.88876	0.00069626	2.5154	0.0019706	783.403630732809	9.2391	0.062071	9.2391	9.2125	9.2745	0	366	22	1.07994477139643	0.0140383382259719	1.07994477139643	652.628696787181	0	8.4836027027817						123	8	4	NaN	NaN	NaN	0.0135	1	36024	24.172	14.261	1	22850			13429	137	11312	11599	13429	13429		
LTLHGLQQYYVK	12	Unmodified	_LTLHGLQQYYVK_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.273276	1461.798	-0.67947	-0.00033177	0.0011095	5.4176E-07	-0.67836	-0.00033123	488.273439739581	10.241	0.20393	10.241	10.179	10.383	0	762	67	0.812773098473386	0.0449186931680692	0.812773098473386	492.917793217639	0	27.2415796637614						834	24	5	NaN	NaN	NaN	5.3405E-05	1	17328	123.5	104.18	1	1062200			13430	1705;51	11313	11600	13430	13430		
LTLHGLQQYYVK	12	Unmodified	_LTLHGLQQYYVK_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.906276	1461.798	1.7937	0.0013129	1.3648	0.00099888	3.1585	0.0023117	731.907067818253	10.241	0.16847	10.241	10.188	10.356	0	366	61	1.07994477139643	0.040134443533411	1.07994477139643	436.634713560568	0	16.2268402239349						695	20	5	NaN	NaN	NaN	4.0043E-06	1	17329	113.46	95.728	1	395700			13431	1705;51	11313	11600	13431	13431		
LTLHVGDGFEFMK	13	Unmodified	_LTLHVGDGFEFMK_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.586755	1492.73844	-1.6777	-0.00083646	-0.25463	-0.00012696	-1.9323	-0.00096342	498.586749444281	14.01	0.097504	14.01	13.974	14.072	0	759	34	0.814815566123307	0.0224608985391257	0.814815566123307	494.060560897778	0	13.6190870570939						175	12	3	NaN	NaN	NaN	0.054643	1	18324	23.836	20.491	1	36194			13432	771	11314	11601	13432	13432		
LTLHVGDGFEFMK	13	Unmodified	_LTLHVGDGFEFMK_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.376494	1492.73844	1.1699	0.00087438	2.517	0.0018811	3.6869	0.0027555	747.379028938822	14.001	0.16845	14.001	13.948	14.116	0	393	73	1.0618830335572	0.048214507613157	1.0618830335572	429.248683470348	0	19.4899186285981						521	20	4	NaN	NaN	NaN	8.6636E-05	1	18327	74.524	69.996	1	147200			13433	771	11314	11601	13433	13433		
LTLIDPETLLPR	12	Unmodified	_LTLIDPETLLPR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.908485	1379.80242	-0.13439	-9.2854E-05	-3.1969	-0.0022088	-3.3313	-0.0023016	691.407211830511	18.124	0.15072	18.124	17.991	18.142	0	516	19	0.979317271586824	0.0121170544279811	0.979317271586824	396.170352404603	0	4.90180032775356						142	18	3	NaN	NaN	NaN	0.00016617	1	14831	76.85	73.505	1	39184			13434	2175	11315	11602	13434	13434		
LTLIDPETLLPR	12	Unmodified	_LTLIDPETLLPR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.908485	1379.80242	0.45508	0.00031442	-0.37734	-0.00026071	0.077739	5.371E-05	690.908096763806	18.169	0.33695	18.169	17.965	18.302	0	483	79	1.00151498427745	0.0524492251347215	1.00151498427745	405.150143530428	0	21.217666659998						1545	39	4	NaN	NaN	NaN	0.00024327	1	14832	114.39	105.42	1	511370			13435	2175	11315	11602	13435	13435		
LTLNCQNSYVEPHK	14	Unmodified	_LTLNCQNSYVEPHK_			0	0	0	Q9NZD8	Q9NZD8	Q9NZD8	SPG21	Maspardin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.278761	1701.81445	0.44454	0.00025262	0.70272	0.00039934	1.1473	0.00065196	568.279178022821	6.4096	0.062047	6.4096	6.3742	6.4363	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	526.838621670295	0	11.091721922627						119	8	3	NaN	NaN	NaN	0.017497	1	24551	28.328	22.94	1	22845			13436	3131	11316	11603	13436	13436		
LTLSALLDGK	10	Unmodified	_LTLSALLDGK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.810782	1029.60701	-0.21474	-0.00011077	-1.8243	-0.00094097	-2.039	-0.0010517	515.809898959277	14.063	0.12414	14.063	14.019	14.143	0	681	28	0.867820189810857	0.0183133685890362	0.867820189810857	352.247620897748	0	7.43338377218157						254	15	3	NaN	NaN	NaN	0.00090329	1	4992	100.84	0	1	88259			13437	794	11317	11604	13437	13437		
LTLSALLDGK	10	Unmodified	_LTLSALLDGK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.810782	1029.60701	0.26935	0.00013893	-1.8925	-0.00097617	-1.6232	-0.00083724	515.809917512973	14.223	0.2926	14.223	14.134	14.427	0	687	49	0.863749705078866	0.0325684096984549	0.863749705078866	350.595414248146	0	13.2194952108152						663	34	4	NaN	NaN	NaN	1.5943E-05	1	4993	134.66	0	1	476990			13438	794	11317	11604	13438	13438		
LTLSALLDGK	10	Unmodified	_LTLSALLDGK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.810782	1029.60701	-0.033742	-1.7404E-05	-0.54231	-0.00027973	-0.57605	-0.00029713	515.810667219782	14.897	0.33694	14.897	14.817	15.154	0	684	82	0.86578508874114	0.0549477770794046	0.86578508874114	351.421568811939	0	22.303264719019						1572	39	5	NaN	NaN	NaN	3.8131E-07	1	4995	119.07	0	1	1797800			13439	794	11317	11604	13439	13439		
LTLSALVDGK	10	Unmodified	_LTLSALVDGK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.802957	1015.59136	-0.14583	-7.4196E-05	-0.056809	-2.8904E-05	-0.20263	-0.0001031	508.802939598158	12.6	0.33696	12.6	12.529	12.866	0	696	64	0.857641857947968	0.042749015256945	0.857641857947968	348.1796069075	0	17.3549543902379						1060	39	5	NaN	NaN	NaN	0.00015055	1	4653	98.009	58.685	1	1133900			13440	1070	11318	11605	13440	13440		
LTLSQFQK	8	Unmodified	_LTLSQFQK_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.776742	963.538931	-0.10962	-5.2922E-05	-1.7986	-0.00086833	-1.9082	-0.00092125	482.775814884046	8.2011	0.21288	8.2011	8.1302	8.343	0	729	40	0.835224628594324	0.0265151904858787	0.835224628594324	339.323598108357	0	10.7722276525049						369	25	3	NaN	NaN	NaN	0.017666	1	3512	60.709	35.858	1	136530			13441	2239	11319	11606	13441	13441		
LTLYDIAHTPGVAADLSHIETK	22	Unmodified	_LTLYDIAHTPGVAADLSHIETK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1183.12354	2364.23253	0.532	0.00062942	-0.72987	-0.00086353	-0.19787	-0.00023411	1183.62393011447	15.358	0.070916	15.358	15.331	15.402	0	60	25	1.28308947459206	0.0158238646987734	1.28308947459206	516.907664074676	0	6.37482973716794						119	9	3	NaN	NaN	NaN	0.05525	1	36167	14.004	13.193	1	21647			13442	1023	11320	11607	13442	13442		
LTLYDIAHTPGVAADLSHIETK	22	Unmodified	_LTLYDIAHTPGVAADLSHIETK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	592.065408	2364.23253	1.0247	0.00060672	1.9055	0.0011282	2.9302	0.0017349	592.317524160272	15.358	0.31047	15.358	15.296	15.606	0	582	64	0.934820374997243	0.0425478933681714	0.934820374997243	753.202974261305	0	34.2816659655649						1201	36	6	NaN	NaN	NaN	4.8117E-06	1	36168	77.347	73.588	1	1298100			13443	1023	11320	11607	13443	13443		
LTLYDIAHTPGVAADLSHIETK	22	Unmodified	_LTLYDIAHTPGVAADLSHIETK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.084785	2364.23253	2.5026	0.0019747	2.6534	0.0020938	5.156	0.0040685	789.421644101868	15.358	0.3548	15.358	15.304	15.659	0	330	91	1.10399226369747	0.0601187846755518	1.10399226369747	667.132700024774	0	36.3292465551186						1773	41	7	NaN	NaN	NaN	8.7448E-30	1	36169	214.41	195.41	1	2202000			13444	1023	11320	11607	13444	13444		
LTMEQIAEK	9	Unmodified	_LTMEQIAEK_			0	0	0	P24928	P24928	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.778625	1061.5427	0.76813	0.00040847	1.7254	0.00091752	2.4935	0.001326	531.77928054251	7.3496	0.16846	7.3496	7.2787	7.4472	0	654	34	0.886123392477847	0.0223612701402726	0.886123392477847	359.534073062603	0	9.07282055821173						201	20	2	NaN	NaN	NaN	0.012358	1	5767	40.502	15.249	1	50662			13445	833	11321	11608	13445	13445		
LTNENMEITSALQSEQHVK	19	Unmodified	_LTNENMEITSALQSEQHVK_			0	0	0	Q08379	Q08379	Q08379	GOLGA2	Golgin subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.691559	2171.05285	1.9375	0.0014041	1.0157	0.00073605	2.9532	0.0021401	725.026158473016	9.7445	0.079821	9.7445	9.7179	9.7977	0	459	28	1.01763759082241	0.0181291645901349	1.01763759082241	615.268789699398	0	10.9609838082132						229	10	4	NaN	NaN	NaN	3.2359E-05	1	34326	74.62	72.379	1	74142			13446	1577	11322	11609	13446	13446		
LTNLQENLSEVSQVK	15	Unmodified	_LTNLQENLSEVSQVK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.454516	1700.89448	2.2014	0.0018744	-2.3567	-0.0020067	-0.15534	-0.00013227	851.452244858054	11.279	0.13305	11.279	11.216	11.35	0	306	58	1.12000185836644	0.0380044844470024	1.12000185836644	452.232952286793	0	15.3454032894848						455	16	3	NaN	NaN	NaN	2.5067E-06	1	24526	92.747	86.72	1	127630			13447	914	11323	11610	13447	13447		
LTNVAVVR	8	Unmodified	_LTNVAVVR_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	436.271627	870.528701	-1.648	-0.00071899	1	0.00043627	-0.64804	-0.00028272	436.272215638193	5.1415	0.070923	5.1415	5.1149	5.1859	0	786	40	0.796423123669906	0.0265816558003595	0.796423123669906	324.045702020914	0	10.8154460345327						146	9	2	NaN	NaN	NaN	0.018291	1	1874	63.301	39.992	1	43225			13448	3376	11324	11611	13448	13448		
LTPEEEEILNK	11	Unmodified	_LTPEEEEILNK_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.843007	1313.67146	1.9005	0.0012503	1.683	0.0011072	3.5836	0.0023574	657.844341556272	8.3963	0.23062	8.3963	8.2898	8.5205	0	522	70	0.975277694896658	0.0464776593881555	0.975277694896658	394.733143486323	0	18.8113320833378						1241	27	5	NaN	NaN	NaN	0.00073231	1	12767	83.358	64.102	1	1866900			13449	1370	11325	11612	13449	13449		
LTPEELER	8	Unmodified	_LTPEELER_			0	0	0	O95399	O95399	O95399	UTS2	Urotensin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.761289	985.508025	0.34379	0.00016975	0.80198	0.00039598	1.1458	0.00056574	493.761745730113	5.5317	0.42562	5.5317	5.4342	5.8598	0	735	49	0.831145085810763	0.0326454272618066	0.831145085810763	337.560289658385	0	13.2585755130437						634	49	2	NaN	NaN	NaN	0.0034318	1	3960	77.072	0	1	591580			13450	432	11326	11613	13450	13450		
LTPEQLHSMR	10	Unmodified	_LTPEQLHSMR_			0	0	0	Q9Y2R0	Q9Y2R0	Q9Y2R0	COA3	Cytochrome c oxidase assembly factor 3 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.313697	1210.61284	2.1179	0.0012841	0.94285	0.00057166	3.0607	0.0018558	606.314419283972	4.9731	0.14185	4.9731	4.9287	5.0706	0	528	40	0.971237000454584	0.0262699700789047	0.971237000454584	393.445814554341	0	10.6419028220457						278	17	3	NaN	NaN	NaN	0.012437	1	9751	44.82	20.699	1	65656			13451	3348	11327	11614	13451	13451		
LTPFMLGALVAMYEHK	16	Unmodified	_LTPFMLGALVAMYEHK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.975518	1819.93648	0.38238	0.00034834	0.32144	0.00029282	0.70382	0.00064117	911.477375368681	19.649	0.062056	19.649	19.632	19.694	0	117	31	1.24546401832526	0.0198286571347865	1.24546401832526	502.625938919086	0	8.0021560344058						225	8	4	NaN	NaN	NaN	0.00020532	1	27724	75.5	66.239	1	64742			13452	546	11328	11615	13452	13452		
LTPLPEDNSMNVDQDGDPSDR	21	Unmodified	_LTPLPEDNSMNVDQDGDPSDR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1158.00824	2314.00193	1.9696	0.0022808	-1.2709	-0.0014717	0.69868	0.00080907	1158.50828300639	9.8509	0.062073	9.8509	9.8243	9.8864	0	135	52	1.23356193185193	0.033729523444999	1.23356193185193	497.017962794853	0	13.5900586714012						275	8	4	NaN	NaN	NaN	0.001872	1	35755	57.62	57.286	1	50564			13453	1465	11329	11616	13453	13453		
LTPLPEDNSMNVDQDGDPSDR	21	Unmodified	_LTPLPEDNSMNVDQDGDPSDR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.341254	2314.00193	1.7555	0.0013559	0.53267	0.0004114	2.2882	0.0017673	772.676214208228	9.8509	0.079819	9.8509	9.8243	9.9041	0	585	40	0.932794566565362	0.0263391634913087	0.932794566565362	563.750915789862	0	15.9185399139262						321	10	4	NaN	NaN	NaN	9.5967E-08	1	35756	88.796	86.694	1	74725			13454	1465	11329	11616	13454	13454		
LTPLSHEVISR	11	Unmodified	_LTPLSHEVISR_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.356419	1250.69829	2.0271	0.0012697	0.91853	0.00057533	2.9457	0.001845	626.357229142798	6.2234	0.24831	6.2234	6.1702	6.4185	0	504	40	0.987393073566096	0.0262372893807942	0.987393073566096	399.84607344545	0	10.6248235050641						584	29	5	NaN	NaN	NaN	1.8411E-07	1	10948	144.47	118.02	1	433650			13455	1027	11330	11617	13455	13455		
LTPPVLEEMGHCDSVYLSEVGDTQVVVFK	29	Unmodified	_LTPPVLEEMGHCDSVYLSEVGDTQVVVFK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1083.53331	3247.5781	1.3055	0.0014145	-0.025095	-2.7192E-05	1.2804	0.0013873	1084.2017266177	18.204	0.19506	18.204	18.115	18.311	0	324	100	1.1079963157843	0.0660078456827891	1.1079963157843	668.487496966454	0	39.8245182876816						1304	23	6	NaN	NaN	NaN	7.8909E-05	1	38505	26.119	24.663	1	257100			13456	1174	11331	11618	13456	13456		
LTPWEQFLEK	10	Unmodified	_LTPWEQFLEK_			0	0	0	Q9H501	Q9H501	Q9H501	ESF1	ESF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.840071	1289.66559	0.61162	0.00039501	-1.4554	-0.00093995	-0.84376	-0.00054494	646.340743295679	16.041	0.23944	16.041	15.925	16.165	0	549	49	0.957085760909907	0.0323748127993709	0.957085760909907	387.445204749505	0	13.1058955070588						358	28	2	NaN	NaN	NaN	0.016872	1	12058	53.517	42.161	1	119640			13457	2898	11332	11619	13457	13457		
LTPYEVDELRR	11	Unmodified	_LTPYEVDELRR_			0	0	1	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.249019	1389.72523	-0.29032	-0.00013478	-2.4493	-0.0011371	-2.7397	-0.0012719	464.247984076473	7.7132	0.14198	7.7132	7.6688	7.8108	0	807	25	0.782101955086014	0.0163750277383129	0.782101955086014	474.547097123714	0	9.9356891106122						175	17	3	NaN	NaN	NaN	0.022508	1	15148	39.01	29.496	1	50347			13458	2435	11333	11620	13458	13458		
LTPYEVDELRR	11	Unmodified	_LTPYEVDELRR_			0	0	1	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.869891	1389.72523	2.9317	0.0020401	-3.6826	-0.0025626	-0.75086	-0.0005225	695.868136167043	7.7132	0.23951	7.7132	7.6245	7.864	0	438	37	1.03173026378327	0.0241505321586708	1.03173026378327	417.343798451823	0	9.76909874560948						617	28	5	NaN	NaN	NaN	0.004139	1	15149	46.033	39.342	1	175710			13459	2435	11333	11620	13459	13459		
LTQAQIFDYGEIPNFPR	17	Unmodified	_LTQAQIFDYGEIPNFPR_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.342419	2008.00543	0.16286	0.00010917	-1.6991	-0.001139	-1.5362	-0.0010298	670.675756227747	16.484	0.088641	16.484	16.448	16.537	0	564	55	0.946969335010767	0.0364418454762743	0.946969335010767	572.837602318283	0	22.0442823382924						452	11	4	NaN	NaN	NaN	0.01033	1	31777	71.219	64.472	1	113060			13460	480	11334	11621	13460	13460		
LTQAQIFDYGEIPNFPR	17	Unmodified	_LTQAQIFDYGEIPNFPR_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.00999	2008.00543	1.5021	0.0015097	-0.26941	-0.00027076	1.2327	0.0012389	1005.51193615839	16.484	0.34578	16.484	16.351	16.697	0	192	82	1.1958073123591	0.0537545245684845	1.1958073123591	482.2442287757	0	21.6780822259671						1538	40	6	NaN	NaN	NaN	8.4725E-57	1	31779	233.59	222.61	1	747180			13461	480	11334	11621	13461	13461		
LTQDQDVDVK	10	Unmodified	_LTQDQDVDVK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.793318	1159.57208	1.9281	0.0011198	-5.7819	-0.0033581	-3.8538	-0.0022383	580.790265894098	3.6962	0.28371	3.6962	3.581	3.8647	0	618	61	0.910492137470517	0.0406033237034125	0.910492137470517	369.021172508973	0	16.4564695335218						1052	33	4	NaN	NaN	NaN	0.0021967	1	8337	83.438	20.469	1	564280			13462	905	11335	11622	13462	13462		
LTQEETNFK	9	Unmodified	_LTQEETNFK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.277303	1108.54005	1.7733	0.00098465	0.31849	0.00017685	2.0918	0.0011615	555.277545667223	4.0154	0.18621	4.0154	3.9534	4.1396	0	660	43	0.882057989648486	0.0284499302427105	0.882057989648486	357.690198495	0	11.5369525758045						334	22	2	NaN	NaN	NaN	0.0032423	1	6944	62.969	45.573	1	83167			13463	3042	11336	11623	13463	13463		
LTQEQVSDSQVLIR	14	Unmodified	_LTQEQVSDSQVLIR_			0	0	0	Q9P0I2	Q9P0I2	Q9P0I2	EMC3	ER membrane protein complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.436126	1614.8577	2.4256	0.0019609	-2.0897	-0.0016894	0.3359	0.00027155	808.433607457004	9.044	0.19511	9.044	8.9553	9.1504	0	372	37	1.07593298845566	0.024074020010092	1.07593298845566	434.625904400451	0	9.72476244497261						310	23	4	NaN	NaN	NaN	1.0659E-08	1	22046	150.44	119.02	1	96809			13464	3144	11337	11624	13464	13464		
LTQIQESQVTSHNK	14	Unmodified	_LTQIQESQVTSHNK_			0	0	0	Q92541	Q92541	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.281159	1611.82165	1.2102	0.00065144	1.6314	0.00087817	2.8417	0.0015296	538.281973399664	3.7849	0.053209	3.7849	3.776	3.8292	0	714	22	0.845418525735192	0.0142674906232585	0.845418525735192	512.268953326859	0	8.64517663818822						47	7	2	NaN	NaN	NaN	0.065603	1	21955	14.975	12.304	1	9409.2			13465	2409	11338	11625	13465	13465		
LTQLGTFEDHFLSLQR	16	Unmodified	_LTQLGTFEDHFLSLQR_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.667014	1903.97921	-0.25169	-0.00015999	-0.80901	-0.00051426	-1.0607	-0.00067425	636.001005233501	15.118	0.088673	15.118	15.083	15.171	0	675	31	0.871889544407995	0.0203411270160542	0.871889544407995	527.618172854272	0	12.3092980513884						253	11	4	NaN	NaN	NaN	1.9659E-06	1	29692	62.454	46.323	1	74604			13466	483	11339	11626	13466	13466		
LTQLGTFEDHFLSLQR	16	Unmodified	_LTQLGTFEDHFLSLQR_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.996882	1903.97921	1.1987	0.0011424	0.80669	0.00076877	2.0054	0.0019112	953.498687652829	15.118	0.070965	15.118	15.092	15.163	0	141	25	1.2295923935727	0.015880331626436	1.2295923935727	496.055010927245	0	6.40660931188023						151	9	3	NaN	NaN	NaN	0.0040457	1	29693	45.183	43.473	1	34367			13467	483	11339	11626	13467	13467		
LTQLQELDLSNNHLETLPDNLGLSHLR	27	Unmodified	_LTQLQELDLSNNHLETLPDNLGLSHLR_			0	0	0	Q9UFC0	Q9UFC0	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	771.658458	3082.60473	1.0363	0.00079964	0.012605	9.7268E-06	1.0489	0.00080937	771.908781862612	15.837	0.097545	15.837	15.792	15.89	0	435	22	1.03374239103424	0.0140848915621548	1.03374239103424	831.77252789031	0	11.3330225802129						240	12	5	NaN	NaN	NaN	5.1362E-10	1	38328	71.892	46.66	1	52736			13468	3200	11340	11627	13468	13468		
LTQQLEEER	9	Unmodified	_LTQQLEEER_			0	0	0	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.293485	1144.57242	2.2877	0.0013115	-1.6854	-0.00096624	0.60229	0.00034529	573.293602240348	4.0154	0.20396	4.0154	3.9711	4.1751	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	372.367053188731	0	9.04304095168561						297	24	3	NaN	NaN	NaN	2.8149E-05	1	7915	126.82	101.97	1	80002			13469	5	11341	11628	13469	13469		
LTQTVAHLK	9	Unmodified	_LTQTVAHLK_			0	0	0	P05161	P05161	P05161	ISG15	Ubiquitin-like protein ISG15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.803291	1009.59203	1.2238	0.00061901	-0.53046	-0.00026831	0.69335	0.0003507	505.802750487354	3.3503	0.13299	3.3503	3.3237	3.4567	4.4409E-16	648	25	0.890187667287968	0.0162571004140306	0.890187667287968	361.421044285419	0	6.60047136643965						164	16	3	NaN	NaN	NaN	0.0092428	1	4507	51.864	36.366	1	39787			13470	526	11342	11629	13470	13470		
LTSFIGAIAIGDLVK	15	Unmodified	_LTSFIGAIAIGDLVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.450517	1516.88648	0.67748	0.00051451	0.29454	0.00022369	0.97201	0.0007382	759.450516870917	19.188	0.079783	19.188	19.153	19.233	0	315	37	1.11400032671325	0.0240143942796327	1.11400032671325	450.250390566097	0	9.7060029017353						229	10	4	NaN	NaN	NaN	0.0017876	1	19052	66.953	55.598	1	62756			13471	1461	11343	11630	13471	13471		
LTSFIGAIAIGDLVK	15	Unmodified	_LTSFIGAIAIGDLVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.450517	1516.88648	0.82178	0.0006241	0.90381	0.0006864	1.7256	0.0013105	759.451446696867	19.188	0.24826	19.188	19.144	19.392	0	390	52	1.06389100039157	0.0341307405307956	1.06389100039157	429.997482331769	0	13.7947707922705						770	29	5	NaN	NaN	NaN	3.6017E-17	1	19053	184.43	145.39	1	700470			13472	1461	11343	11630	13472	13472		
LTSIIFAEDITTGQVLR	17	Unmodified	_LTSIIFAEDITTGQVLR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.022566	1876.03058	1.1503	0.0010801	1.3222	0.0012416	2.4725	0.0023217	939.524956192431	17.548	0.12413	17.548	17.504	17.628	0	213	40	1.18187287897418	0.0258924572936763	1.18187287897418	476.854890315465	0	10.4469313937473						308	15	4	NaN	NaN	NaN	7.5915E-07	1	29068	97.594	94.509	1	67539			13473	2354	11344	11631	13473	13473		
LTSLGVIGALVK	12	Unmodified	_LTSLGVIGALVK_			0	0	0	Q92600	Q92600	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.876456	1169.73836	0.49624	0.00029073	-1.265	-0.00074116	-0.7688	-0.00045042	585.875669919381	16.032	0.079792	16.032	16.005	16.085	0	522	37	0.975277694896658	0.0242475250130607	0.975277694896658	395.238264155708	0	9.82648300723179						195	10	3	NaN	NaN	NaN	0.037689	1	8613	24.821	20.618	1	44004			13474	2417	11345	11632	13474	13474		
LTSLLEETLNK	11	Unmodified	_LTSLLEETLNK_			0	0	0	Q9UHY1	Q9UHY1	Q9UHY1	NRBP1	Nuclear receptor-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.855918	1259.69728	0.8256	0.00052083	-0.92953	-0.0005864	-0.10393	-6.5566E-05	630.855070953194	12.352	0.097543	12.352	12.316	12.414	0	543	37	0.961130371139249	0.0242609491796308	0.961130371139249	389.180605777252	0	9.82373586558106						325	12	3	NaN	NaN	NaN	4.6393E-05	1	11213	109.88	86.824	1	79537			13475	3226	11346	11633	13475	13475		
LTSLNEEYTK	10	Unmodified	_LTSLNEEYTK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.303518	1196.59248	1.7104	0.0010251	2.3324	0.0013978	4.0428	0.0024229	599.305127515483	5.576	0.20399	5.576	5.5051	5.7091	0	564	40	0.946969335010767	0.0263172834355764	0.946969335010767	383.665691422427	0	10.6624769909319						449	24	4	NaN	NaN	NaN	0.0050796	1	9351	55.235	29.981	1	150420			13476	1063	11347	11634	13476	13476		
LTSLVPFVDAFQLER	15	Unmodified	_LTSLVPFVDAFQLER_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.974887	1733.93522	1.7218	0.0014945	-0.05892	-5.1141E-05	1.6629	0.0014434	868.476503355399	19.614	0.11531	19.614	19.561	19.676	0	309	64	1.11800162319566	0.0420223118380454	1.11800162319566	451.355758551383	0	16.9651027710757						612	14	4	NaN	NaN	NaN	3.1167E-08	1	25447	114.93	63.404	1	444210			13477	1728	11348	11635	13477	13477		
LTSMHFYGWK	10	Unmodified	_LTSMHFYGWK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.874348	1268.60121	-2.1797	-0.00092392	0.68452	0.00029015	-1.4952	-0.00063377	423.874375471903	9.9484	0.10638	9.9484	9.9041	10.01	0	798	28	0.788241307691771	0.0184154953193295	0.788241307691771	478.721095989882	0	11.1842477886394						151	13	3	NaN	NaN	NaN	0.034683	1	11461	21.275	18.907	1	31975			13478	828	11349	11636	13478	13478		
LTSMHFYGWK	10	Unmodified	_LTSMHFYGWK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.307884	1268.60121	1.2206	0.00077545	0.085068	5.4045E-05	1.3057	0.00082949	635.307858621283	9.9573	0.22165	9.9573	9.8243	10.046	0	546	31	0.959108205975751	0.0202202547375568	0.959108205975751	388.332230099331	0	8.18695593102933						298	26	4	NaN	NaN	NaN	0.063827	1	11462	28.096	18.008	1	71718			13479	828	11349	11636	13479	13479		
LTSNPLASHDYILK	14	Unmodified	_LTSNPLASHDYILK_			0	0	0	Q969X5	Q969X5	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.619112	1570.83551	0.52575	0.00027582	0.75798	0.00039765	1.2837	0.00067347	524.619632782058	9.9662	0.14185	9.9662	9.8952	10.037	0	663	55	0.880024865079826	0.0365987959627344	0.880024865079826	533.356541524415	0	22.1814269269211						634	17	4	NaN	NaN	NaN	0.07139	1	20689	6.8556	4.1845	1	195810			13480	2464	11350	11637	13480	13480		
LTSNPLASHDYILK	14	Unmodified	_LTSNPLASHDYILK_			0	0	0	Q969X5	Q969X5	Q969X5	ERGIC1	Endoplasmic reticulum-Golgi intermediate compartment protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.42503	1570.83551	2.0641	0.0016232	-0.15319	-0.00012047	1.9109	0.0015028	786.424990176927	9.9662	0.11524	9.9662	9.913	10.028	0	306	31	1.12000185836644	0.0200037307887677	1.12000185836644	452.535446220856	0	8.08248412353532						259	14	3	NaN	NaN	NaN	5.2131E-05	1	20690	63.908	51.327	1	67864			13481	2464	11350	11637	13481	13481		
LTSSSIDPGLSIK	13	Unmodified	_LTSSSIDPGLSIK_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.36665	1316.71875	1.1741	0.00077415	-1.2343	-0.00081386	-0.06023	-3.9714E-05	659.365870874735	9.9484	0.14184	9.9484	9.9041	10.046	0	486	46	0.999498404980629	0.0302528786941803	0.999498404980629	404.526482992419	0	12.2442322644729						354	17	4	NaN	NaN	NaN	0.00049883	1	12888	77.358	64.085	1	103640			13482	1974	11351	11638	13482	13482		
LTSSVSCALDEAAAALTR	18	Unmodified	_LTSSVSCALDEAAAALTR_			0	0	0	Q8IWZ3;O75179	Q8IWZ3;O75179	Q8IWZ3	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.643769	1834.90948	-1.0434	-0.00063924	-0.42828	-0.00026238	-1.4717	-0.00090162	612.643540364306	17.903	0.062059	17.903	17.867	17.929	0	648	13	0.890187667287968	0.0081274220704205	0.890187667287968	538.837677063768	0	4.91959323845083						45	8	2	NaN	NaN	NaN	0.039709	1	28104	19.006	18.267	1	9091.5			13483	2207;311	11352	11639	13483	13483		
LTTDFGNAEK	10	Unmodified	_LTTDFGNAEK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.269478	1094.5244	0.28484	0.00015617	1.5322	0.00084004	1.817	0.00099621	548.270335725994	5.4519	0.24839	5.4519	5.3987	5.6471	0	681	46	0.867820189810857	0.0305180491511973	0.867820189810857	351.971843548695	0	12.3775571799013						519	29	4	NaN	NaN	NaN	0.00079749	1	6566	69.915	37.963	1	229140			13484	495	11353	11640	13484	13484		
LTTDFNVIVEALSK	14	Unmodified	_LTTDFNVIVEALSK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.427239	1548.83992	1.0481	0.00081271	-0.2331	-0.00018076	0.81498	0.00063196	775.426978577471	19.038	0.15961	19.038	18.993	19.153	0	411	43	1.04982941439551	0.0281367598695683	1.04982941439551	424.234986920448	0	11.3700357330178						603	19	5	NaN	NaN	NaN	8.4378E-17	1	20014	190.68	164.1	1	286000			13485	533	11354	11641	13485	13485		
LTTDPDLILEVLR	13	Unmodified	_LTTDPDLILEVLR_			0	0	0	Q71RC2	Q71RC2	Q71RC2	LARP4	La-related protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.429781	1496.84501	0.079131	5.9303E-05	-1.3847	-0.0010377	-1.3056	-0.00097843	749.428105163543	19.153	0.088654	19.153	19.117	19.206	0	426	40	1.03977710643793	0.0261504383989628	1.03977710643793	420.302149976549	0	10.5706169272822						257	11	4	NaN	NaN	NaN	0.00042144	1	18455	57.003	51.507	1	78982			13486	2104	11355	11642	13486	13486		
LTTEEVIK	8	Unmodified	_LTTEEVIK_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.768583	931.522613	0.13057	6.0946E-05	-3.0029	-0.0014016	-2.8723	-0.0013407	466.766843170659	5.7002	0.23945	5.7002	5.6203	5.8598	0	756	76	0.816857749704129	0.0510120487062221	0.816857749704129	332.022170503379	0	20.7344928041617						563	28	2	NaN	NaN	NaN	0.040891	1	2904	41.025	7.2118	1	189900			13487	166	11356	11643	13487	13487		
LTTLADLFRPPIDLMHK	17	Unmodified	_LTTLADLFRPPIDLMHK_			0	0	1	O94888	O94888	O94888	UBXN7	UBX domain-containing protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.036161	1980.08665	-1.0528	-0.00069592	-0.024936	-1.6483E-05	-1.0777	-0.0007124	661.036668204545	18.151	0.070913	18.151	18.115	18.186	0	639	25	0.896281965493857	0.0162458284325523	0.896281965493857	542.228387697061	0	9.82832378305432						114	9	3	NaN	NaN	NaN	0.04634	1	31292	37.146	34.061	1	17058			13488	392	11357	11644	13488	13488		
LTTLPSDFCGLTHLVK	16	Unmodified	_LTTLPSDFCGLTHLVK_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.322078	1800.94441	0.15059	9.0553E-05	-0.23193	-0.00013947	-0.081345	-4.8914E-05	601.322239843948	14.959	0.25715	14.959	14.87	15.127	0	630	52	0.902373728295776	0.0345152137235557	0.902373728295776	546.291188134802	0	20.8952859802092						958	30	4	NaN	NaN	NaN	1.7548E-06	1	27245	110.58	90.246	1	1196300			13489	2474	11358	11645	13489	13489		
LTTLPSDFCGLTHLVK	16	Unmodified	_LTTLPSDFCGLTHLVK_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.479479	1800.94441	1.4169	0.0012773	0.54517	0.00049146	1.9621	0.0017688	901.480092143938	14.959	0.16849	14.959	14.914	15.083	0	138	85	1.23157729878518	0.055611706916725	1.23157729878518	497.061379765883	0	22.4447396021586						890	20	3	NaN	NaN	NaN	8.7195E-05	1	27246	79.795	68.824	1	674820			13490	2474	11358	11645	13490	13490		
LTTPTYGDLNHLVSATMSGVTTCLR	25	Unmodified	_LTTPTYGDLNHLVSATMSGVTTCLR_			0	0	0	P04350;P07437;P68371;Q9BVA1;Q13885	P04350;P07437;P68371;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	903.450922	2707.33094	1.4684	0.0013266	0.29105	0.00026295	1.7594	0.0015896	903.786102674504	18.878	0.33693	18.878	18.763	19.1	0	393	274	1.0618830335572	0.18257566713551	1.0618830335572	641.21129577306	0	110.247151899979						5720	39	8	NaN	NaN	NaN	7.8936E-33	1	37626	267.01	239.07	1	5141800			13491	1449;560;512;2761	11359	11646	13491	13491		
LTTPTYGDLNHLVSATMSGVTTCLR	25	Oxidation (M)	_LTTPTYGDLNHLVSATM(Oxidation (M))SGVTTCLR_	LTTPTYGDLNHLVSATM(1)SGVTTCLR	LTTPTYGDLNHLVSATM(160)SGVTTCLR	0	1	0	P04350;P07437;P68371;Q9BVA1;Q13885	P04350;P07437;P68371;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	908.78256	2723.32585	1.9048	0.0017311	-0.92049	-0.00083652	0.98433	0.00089455	909.116369542818	15.579	0.22168	15.579	15.491	15.712	1.7764E-15	420	58	1.04379886199097	0.0382198802455282	1.04379886199097	630.272373614609	0	23.0781384410282						1140	26	6	NaN	NaN	NaN	1.1431E-24	1	37670	155.08	139.94	1	427590			13492	1449;560;512;2761	11359	11647	13492	13492	90	
LTTPTYGDLNHLVSATMSGVTTSLR	25	Unmodified	_LTTPTYGDLNHLVSATMSGVTTSLR_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.118049	2634.33232	0.92964	0.00081726	-0.18954	-0.00016663	0.7401	0.00065063	879.452452625104	19.082	0.08868	19.082	19.029	19.117	0	429	37	1.03776581230406	0.0241405316442127	1.03776581230406	626.736979379512	0	14.5791696969841						355	11	5	NaN	NaN	NaN	3.5367E-06	1	37375	32.375	31.349	1	72737			13493	2745	11360	11648	13493	13493		
LTVDEAVR	8	Unmodified	_LTVDEAVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.750724	901.486896	-0.33786	-0.00015263	-0.95995	-0.00043366	-1.2978	-0.00058629	451.750372991008	5.6115	0.20399	5.6115	5.5494	5.7534	0	774	43	0.804600385996946	0.0286164420123584	0.804600385996946	327.198332277087	0	11.6371459237445						400	24	3	NaN	NaN	NaN	0.036908	1	2350	42.835	0	1	147270			13494	1816	11361	11649	13494	13494		
LTVEDLEK	8	Unmodified	_LTVEDLEK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.758215	945.501877	0.35974	0.00017043	-0.36748	-0.0001741	-0.0077432	-3.6684E-06	473.758213634569	8.3076	0.29275	8.3076	8.2188	8.5116	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	346.041335227428	0	9.93452132507059						528	34	4	NaN	NaN	NaN	0.0023861	1	3169	77.072	7.9785	1	301980			13495	1863	11362	11650	13495	13495		
LTVIDTPGFGDHINNENCWQPIMK	24	Unmodified	_LTVIDTPGFGDHINNENCWQPIMK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	933.77915	2798.31562	-0.062432	-5.8298E-05	1.5924	0.0014869	1.5299	0.0014286	934.115134083021	14.826	0.070921	14.826	14.79	14.861	0	489	70	0.997481546940468	0.0463749432889504	0.997481546940468	602.222793057715	0	27.9985609368188						411	9	5	NaN	NaN	NaN	0.00063828	1	37893	33.5	25.011	1	78321			13496	3215	11363	11651	13496	13496		
LTVLPPELGNLDLTGQK	17	Unmodified	_LTVLPPELGNLDLTGQK_			0	0	0	Q15404	Q15404	Q15404	RSU1	Ras suppressor protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.511834	1807.00911	1.0179	0.00092067	-0.77076	-0.00069716	0.24711	0.00022351	905.012674757241	17.22	0.31036	17.22	17.158	17.468	0	282	49	1.13599383354359	0.0319707579937258	1.13599383354359	458.472389115724	0	12.9029835958714						592	36	3	NaN	NaN	NaN	0.0037412	1	27409	33.526	26.386	1	169420			13497	1844	11364	11652	13497	13497		
LTVMTDLEDK	10	Unmodified	_LTVMTDLEDK_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.794472	1163.57439	0.89559	0.00052194	1.9444	0.0011332	2.84	0.0016551	582.795321222151	9.5849	0.11526	9.5849	9.5228	9.6381	0	591	37	0.928742107665821	0.0243181264417436	0.928742107665821	376.40260659352	0	9.85570278831011						319	14	3	NaN	NaN	NaN	4.2576E-05	1	8435	105.36	58.009	1	162170			13498	1607	11365	11653	13498	13498		
LTVNPGTK	8	Unmodified	_LTVNPGTK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.242535	828.470518	-0.48874	-0.00020294	-1.4051	-0.00058347	-1.8939	-0.00078642	415.24201929853	3.2084	0.13302	3.2084	3.1552	3.2883	0	840	25	0.759569036796863	0.0163978531356664	0.759569036796863	309.29399269457	0	6.67715141382973						191	16	3	NaN	NaN	NaN	0.019378	1	1292	42.835	16.612	1	65518			13499	611	11366	11654	13499	13499		
LTVVDTPGYGDAINCR	16	Unmodified	_LTVVDTPGYGDAINCR_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.925068	1749.83558	2.8967	0.0025373	-1.1255	-0.00098586	1.7712	0.0015515	876.425448009089	10.188	0.16848	10.188	10.099	10.268	0	339	55	1.09798411722691	0.0360662768322055	1.09798411722691	443.242415743281	0	14.5595035658143						365	20	2	NaN	NaN	NaN	3.1441E-12	1	25879	156.73	145.37	1	197340			13500	1792	11367	11655	13500	13500		
LTWFVNEGLVDGWDDPR	17	Unmodified	_LTWFVNEGLVDGWDDPR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.98397	2017.95339	0.99068	0.0010006	-0.10228	-0.0001033	0.88841	0.00089728	1010.48525829096	18.683	0.070935	18.683	18.656	18.727	0	246	28	1.1599488233373	0.0179501929154187	1.1599488233373	467.767411983914	0	7.23869460076662						170	9	4	NaN	NaN	NaN	1.5951E-06	1	31951	91.032	81.876	1	35532			13501	565	11368	11656	13501	13501		
LTWHAYPEDAENK	13	Unmodified	_LTWHAYPEDAENK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.247567	1572.72087	-0.98471	-0.00051722	0.98275	0.00051619	-0.0019544	-1.0266E-06	525.247940719177	6.9062	0.22163	6.9062	6.8264	7.0481	0	795	40	0.790287188799094	0.0265890562583758	0.790287188799094	478.96422917935	0	16.1146568183037						697	26	4	NaN	NaN	NaN	0.00012724	1	20741	117.45	96.296	1	225830			13502	1071	11369	11657	13502	13502		
LTWHAYPEDAENK	13	Unmodified	_LTWHAYPEDAENK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.367712	1572.72087	2.4191	0.0019047	0.8746	0.00068863	3.2937	0.0025933	787.368457562991	6.9062	0.24827	6.9062	6.7909	7.0392	0	384	37	1.06790610341098	0.0240906221251305	1.06790610341098	431.48169323989	0	9.73368575434881						581	29	4	NaN	NaN	NaN	0.0019488	1	20742	47.361	41.333	1	162260			13503	1071	11369	11657	13503	13503		
LTWHSCPEDEAQ	12	Unmodified	_LTWHSCPEDEAQ_			0	0	0	Q13185	Q13185	Q13185	CBX3	Chromobox protein homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.809173	1471.60379	1.9656	0.0014483	-0.24593	-0.0001812	1.7197	0.0012671	736.809377701342	6.4274	0.266	6.4274	6.3742	6.6402	0	498	58	0.991429299781895	0.0383415147321906	0.991429299781895	400.821801227301	0	15.5009691564699						1280	31	6	NaN	NaN	NaN	2.7268E-11	1	17627	171.34	148.29	1	1029100			13504	1639	11370	11658	13504	13504		
LTYQDAVNLQNYVEEK	16	Unmodified	_LTYQDAVNLQNYVEEK_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.975812	1925.93707	1.6748	0.0016144	0.42193	0.00040673	2.0967	0.0020212	963.977899402245	14.028	0.15073	14.028	13.983	14.134	0	228	70	1.17191150690002	0.0458727394950837	1.17191150690002	472.745787313841	0	18.5049333684						442	18	4	NaN	NaN	NaN	0.00021309	1	30187	57.042	51.655	1	91332			13505	402	11371	11659	13505	13505		
LTYTAEVSVPK	11	Unmodified	_LTYTAEVSVPK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.332079	1206.6496	1.2032	0.00072711	-0.16358	-9.8854E-05	1.0396	0.00062826	604.332296526488	8.4938	0.12414	8.4938	8.4584	8.5825	0	567	76	0.944945209309785	0.0505611644234498	0.944945209309785	382.809247593391	0	20.4829667579607						561	15	3	NaN	NaN	NaN	0.0016517	1	9649	65.933	39.476	1	181790			13506	614	11372	11660	13506	13506		
LVAFCPFASSQVALENANAVSEGVVHEDLR	30	Unmodified	_LVAFCPFASSQVALENANAVSEGVVHEDLR_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1077.20306	3228.58736	1.8504	0.0019933	0.99879	0.0010759	2.8492	0.0030692	1077.53857315284	18.417	0.06205	18.417	18.381	18.444	0	339	82	1.09798411722691	0.0540733643973776	1.09798411722691	662.463464419043	0	32.6249057244578						395	8	4	NaN	NaN	NaN	0.069434	1	38480	3.062	2.9752	1	65250			13507	92	11373	11661	13507	13507		
LVAGEHGLIIR	11	Unmodified	_LVAGEHGLIIR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.356222	1176.69789	1.6103	0.00094903	0.18524	0.00010917	1.7955	0.0010582	589.35610683093	7.1989	0.10641	7.1989	7.1545	7.261	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	390.297430691321	0	7.373943672797						183	13	3	NaN	NaN	NaN	0.00012588	1	8808	88.181	60.085	1	58813			13508	240	11374	11662	13508	13508		
LVAGEMGQNEPDQGGQR	17	Unmodified	_LVAGEMGQNEPDQGGQR_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.412856	1784.81116	3.7558	0.0033555	-3.7298	-0.0033322	0.026058	2.328E-05	893.409851250257	4.9642	0.28372	4.9642	4.9021	5.1859	0	366	103	1.07994477139643	0.0681628145197419	1.07994477139643	435.893006579725	0	27.5122348335718						1912	33	5	NaN	NaN	NaN	4.4626E-10	1	26823	151.08	133.27	1	639710			13509	2667	11375	11663	13509	13509		
LVAGEMGQNEPDQGGQR	17	Oxidation (M)	_LVAGEM(Oxidation (M))GQNEPDQGGQR_	LVAGEM(1)GQNEPDQGGQR	LVAGEM(82)GQNEPDQGGQR	0	1	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.410314	1800.80607	2.8833	0.0025991	-1.8528	-0.0016701	1.0306	0.00092895	901.408812290179	3.306	0.097548	3.306	3.2705	3.3681	0	387	40	1.06589869032374	0.0261071745349262	1.06589869032374	430.194186703782	0	10.5367938042734						227	12	3	NaN	NaN	NaN	5.3416E-06	1	27224	82.437	79.352	1	37406			13510	2667	11375	11664	13510	13510	615	
LVAGQQQVLQQLAEEEPK	18	Unmodified	_LVAGQQQVLQQLAEEEPK_			0	0	0	Q01970	Q01970	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.53911	2007.06367	0.39834	0.00040015	-0.15917	-0.00015989	0.23917	0.00024026	1005.0404443871	13.371	0.097569	13.371	13.318	13.416	0	63	52	1.28111162701928	0.0336418368402702	1.28111162701928	516.647349451804	0	13.5670970957116						395	12	3	NaN	NaN	NaN	6.0732E-19	1	31761	144.2	125	1	90137			13511	1524	11376	11665	13511	13511		
LVAGSTDQLLSAFVPPEEPPLQPAR	25	Unmodified	_LVAGSTDQLLSAFVPPEEPPLQPAR_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.137549	2631.39082	1.0102	0.00088711	-1.2839	-0.0011275	-0.27372	-0.00024036	878.470865480136	18.506	0.097599	18.506	18.461	18.559	0	471	40	1.00957851518677	0.0262046696285547	1.00957851518677	609.717431310905	0	15.825855655533						202	12	3	NaN	NaN	NaN	0.056282	1	37363	4.05	3.9254	1	37066			13512	1723	11377	11666	13512	13512		
LVAIVDPHIK	10	Unmodified	_LVAIVDPHIK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.842416	1103.67028	1.2588	0.0006959	0.082668	4.5702E-05	1.3414	0.0007416	552.84259043068	8.4406	0.16849	8.4406	8.3608	8.5293	0	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.749574412061	0	7.39084154933028						388	20	4	NaN	NaN	NaN	0.0095269	1	6831	62.969	53.576	1	144770			13513	1771	11378	11667	13513	13513		
LVAIVDVIDQNR	12	Unmodified	_LVAIVDVIDQNR_			0	0	0	P50914	P50914	P50914	RPL14	60S ribosomal protein L14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.888084	1353.76161	1.6234	0.0011005	-1.2835	-0.0008701	0.33991	0.00023042	677.887408858704	14.444	0.28373	14.444	14.391	14.675	0	504	91	0.987393073566096	0.0605350879270684	0.987393073566096	399.513523295718	0	24.4933724047846						1526	33	5	NaN	NaN	NaN	1.0904E-16	1	14028	166.66	147.4	1	1274700			13514	1173	11379	11668	13514	13514		
LVARPEPATGYTLEFR	16	Unmodified	_LVARPEPATGYTLEFR_			0	0	1	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.328221	1818.96283	0.65103	0.00039539	2.1895	0.0013298	2.8406	0.0017252	607.329537460795	10.294	0.070919	10.294	10.259	10.33	0	522	58	0.975277694896658	0.0384158376205809	0.975277694896658	590.382119990216	0	23.2549393616981						164	9	2	NaN	NaN	NaN	0.040214	1	27704	22.395	20.093	1	30524			13515	1898	11380	11669	13515	13515		
LVASAYSIAQK	11	Unmodified	_LVASAYSIAQK_			0	0	0	O95861	O95861	O95861	BPNT1	3(2),5-bisphosphate nucleotidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.826963	1149.63937	1.3556	0.00078058	0.44739	0.00025762	1.803	0.0010382	575.827129808939	6.9151	0.079782	6.9151	6.8885	6.9683	0	543	52	0.961130371139249	0.0343910976262953	0.961130371139249	389.584304553539	0	13.9400774898955						253	10	3	NaN	NaN	NaN	0.0087122	1	8065	58.916	48.214	1	62520			13516	459	11381	11670	13516	13516		
LVASMEEAR	9	Unmodified	_LVASMEEAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.255317	1004.49608	0.55345	0.00027852	0.3769	0.00018968	0.93035	0.0004682	503.256408661668	4.7337	0.23054	4.7337	4.6361	4.8667	0	702	46	0.853568545818287	0.030564706108142	0.853568545818287	346.577115844809	0	12.4102835577767						411	27	3	NaN	NaN	NaN	0.0069061	1	4382	67.464	53.816	1	118340			13517	1816	11382	11671	13517	13517		
LVCSGENDNHGQIANLPSAVTSDQK	25	Unmodified	_LVCSGENDNHGQIANLPSAVTSDQK_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	885.420679	2653.24021	1.5006	0.0013287	0.68974	0.00061071	2.1904	0.0019394	885.755675800063	8.5293	0.04436	8.5293	8.5027	8.547	0	492	22	0.995464410099171	0.0141199586984805	0.995464410099171	601.167439567001	0	8.52713500496884						110	6	4	NaN	NaN	NaN	3.5925E-06	1	37455	41.186	40.587	1	17391			13518	2401	11383	11672	13518	13518		
LVCSPDFESLLDHK	14	Unmodified	_LVCSPDFESLLDHK_			0	0	0	P05423	P05423	P05423	POLR3D	DNA-directed RNA polymerase III subunit RPC4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.939746	1658.79741	-0.71117	-0.00039394	-0.7115	-0.00039413	-1.4227	-0.00078807	554.273895565714	13.7	0.079798	13.7	13.655	13.735	0	675	22	0.871889544407995	0.0142417532513394	0.871889544407995	528.181348821847	0	8.62750160284099						143	10	4	NaN	NaN	NaN	0.068533	1	23285	26.465	15.678	1	30852			13519	532	11384	11673	13519	13519		
LVDAGFVWTEPHSK	14	Unmodified	_LVDAGFVWTEPHSK_			0	0	0	Q96D46	Q96D46	Q96D46	NMD3	60S ribosomal export protein NMD3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.271824	1584.79364	0.11443	6.0565E-05	-1.76	-0.00093151	-1.6456	-0.00087094	529.270285821892	10.879	0.15956	10.879	10.773	10.933	0	702	43	0.853568545818287	0.0285171523419938	0.853568545818287	517.282409145119	0	17.2820581752848						283	19	3	NaN	NaN	NaN	0.001882	1	21102	67.548	62.719	1	71470			13520	2501	11385	11674	13520	13520		
LVDELMEAPGDVEALAPPVR	20	Unmodified	_LVDELMEAPGDVEALAPPVR_			0	0	0	P48960	P48960	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.04845	2120.08236	-0.17467	-0.00018533	-2.3397	-0.0024825	-2.5144	-0.0026679	1061.54484074272	16.936	0.12418	16.936	16.901	17.025	0	141	55	1.2295923935727	0.0357160627079742	1.2295923935727	495.689036028037	0	14.3983166998877						273	15	2	NaN	NaN	NaN	0.028395	1	33619	25.922	24.827	1	100780			13521	1119	11386	11675	13521	13521		
LVDELMEAPGDVEALAPPVR	20	Unmodified	_LVDELMEAPGDVEALAPPVR_			0	0	0	P48960	P48960	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.701395	2120.08236	0.01976	1.3984E-05	-0.76605	-0.00054214	-0.74629	-0.00052815	708.03624579109	16.927	0.088718	16.927	16.883	16.972	0	477	28	1.0055473068722	0.0181391858417761	1.0055473068722	608.051780663804	0	10.9687174094191						165	11	3	NaN	NaN	NaN	0.025229	1	33620	29.98	26.34	1	31463			13522	1119	11386	11675	13522	13522		
LVDEPGHCADFHPSGTVVAIGTHSGR	26	Unmodified	_LVDEPGHCADFHPSGTVVAIGTHSGR_			0	0	0	Q9HC35	Q9HC35	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	679.827863	2715.28235	1.6022	0.0010892	1.6061	0.0010918	3.2082	0.002181	680.079400808554	8.0414	0.10657	8.0414	7.9881	8.0947	0	486	25	0.999498404980629	0.0161359806819593	0.999498404980629	804.707415049655	0	12.9912596550091						222	13	4	NaN	NaN	NaN	0.0021153	1	37649	43.764	42.338	1	57725			13523	2956	11387	11676	13523	13523		
LVDEYSLNAGK	11	Unmodified	_LVDEYSLNAGK_			0	0	0	P19367	P19367	P19367	HK1	Hexokinase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.81151	1207.60847	0.83765	0.00050662	0.0086789	5.2491E-06	0.84633	0.00051187	604.810551758546	7.1102	0.21288	7.1102	7.0392	7.2521	0	582	58	0.934820374997243	0.0385117135892644	0.934820374997243	378.704148402958	0	15.6014418260878						293	25	3	NaN	NaN	NaN	0.0028184	1	9674	57.888	45.821	1	85158			13524	765	11388	11677	13524	13524		
LVDQNIFSFYLSR	13	Unmodified	_LVDQNIFSFYLSR_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.419748	1600.82494	1.2931	0.0010363	3.7219	0.0029828	5.0149	0.0040191	801.422310360868	18.027	0.16846	18.027	17.965	18.133	0	360	55	1.08395544855938	0.0360911337192322	1.08395544855938	437.899218197358	0	14.580192627393						657	20	5	NaN	NaN	NaN	3.2726E-11	1	21615	136.06	122.88	1	276510			13525	557	11389	11678	13525	13525		
LVDSPDIQPVGTCEK	15	Unmodified	_LVDSPDIQPVGTCEK_			0	0	0	Q9UQR0	Q9UQR0	Q9UQR0	SCML2	Sex comb on midleg-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.40872	1656.80289	2.5094	0.0020813	-1.4867	-0.0012331	1.0227	0.00084824	829.40779889039	8.1567	0.12414	8.1567	8.1124	8.2366	0	378	31	1.07192009927972	0.0200699816330834	1.07192009927972	432.911640614344	0	8.10557492271687						223	15	3	NaN	NaN	NaN	3.5197E-06	1	23237	106.11	99.365	1	44029			13526	3322	11390	11679	13526	13526		
LVDTFLEDVK	10	Unmodified	_LVDTFLEDVK_			0	0	0	CON__P34955	CON__P34955	CON__P34955			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.818804	1177.62306	0.71823	0.00042363	-0.14213	-8.3832E-05	0.5761	0.0003398	589.818692026173	13.061	0.1596	13.061	13.008	13.167	0	582	52	0.934820374997243	0.034438755237733	0.934820374997243	378.813077627155	0	13.9554626858582						532	19	4	NaN	NaN	NaN	0.0050863	1	8829	78.816	39.492	1	159090		+	13527	32	11391	11680	13527	13527		
LVDVVAVILK	10	Unmodified	_LVDVVAVILK_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.854993	1067.69543	-0.86467	-0.00046247	-0.20047	-0.00010722	-1.0651	-0.00056969	534.854690114016	17.255	0.12415	17.255	17.211	17.335	0	624	28	0.906433495720521	0.0182651557513902	0.906433495720521	367.747521388043	0	7.41032385393152						227	15	3	NaN	NaN	NaN	0.00055671	1	5908	67.507	56.805	1	66293			13528	2739	11392	11681	13528	13528		
LVEALCAAGHR	11	Unmodified	_LVEALCAAGHR_			0	0	0	P23919	P23919	P23919	DTYMK	Thymidylate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.545002	1195.61318	-1.7372	-0.00069407	0.014923	5.9624E-06	-1.7222	-0.00068811	399.545289804378	5.1947	0.088664	5.1947	5.1593	5.2479	0	843	25	0.757518876820989	0.016402423941871	0.757518876820989	460.364327250166	0	9.96818837698208						137	11	3	NaN	NaN	NaN	0.047493	1	9314	24.121	22.322	1	28407			13529	827	11393	11682	13529	13529		
LVEALCAAGHR	11	Unmodified	_LVEALCAAGHR_			0	0	0	P23919	P23919	P23919	DTYMK	Thymidylate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.813864	1195.61318	1.487	0.00089044	0.45255	0.00027099	1.9395	0.0011614	598.814257032475	5.1947	0.13303	5.1947	5.1593	5.2923	0	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	390.225872245325	0	8.19120193876688						259	16	3	NaN	NaN	NaN	0.00080353	1	9316	58.916	46.958	1	72397			13530	827	11393	11682	13530	13530		
LVEALCAEHQINLIK	15	Unmodified	_LVEALCAEHQINLIK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.32219	1749.94474	0.60694	0.00035465	-0.68521	-0.00040039	-0.078277	-4.5739E-05	584.322108978217	11.491	0.30158	11.491	11.42	11.722	0	648	97	0.890187667287968	0.0650284767632189	0.890187667287968	539.03368953618	0	39.3765731010251						2131	35	6	NaN	NaN	NaN	1.4615E-05	1	25893	128.97	119.71	1	1799200			13531	837	11394	11683	13531	13531		
LVEALCAEHQINLIK	15	Unmodified	_LVEALCAEHQINLIK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.979647	1749.94474	2.437	0.0021348	-0.27629	-0.00024203	2.1607	0.0018928	875.979664022352	11.491	0.33707	11.491	11.42	11.758	0	207	91	1.18585551256002	0.0597806121471063	1.18585551256002	478.714757918765	0	24.1326712817292						1328	39	5	NaN	NaN	NaN	5.571E-24	1	25894	188.88	171.15	1	830620			13532	837	11394	11683	13532	13532		
LVEAVDGK	8	Unmodified	_LVEAVDGK_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.734543	829.454533	-0.84065	-0.00034949	-0.7175	-0.00029829	-1.5581	-0.00064777	415.734342384663	3.4834	0.12428	3.4834	3.439	3.5633	0	837	19	0.761618911097395	0.0122983894338651	0.761618911097395	310.122703000104	0	5.00776663788804						115	15	2	NaN	NaN	NaN	0.071503	1	1306	20.234	0	1	41372			13533	2289	11395	11684	13533	13533		
LVEDHLAVQSLIR	13	Unmodified	_LVEDHLAVQSLIR_			0	0	0	Q02218;Q9ULD0	Q02218	Q02218	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.287586	1491.84093	-1.479	-0.00073699	-0.86248	-0.00042976	-2.3415	-0.0011668	498.286905514067	11.403	0.097535	11.403	11.367	11.465	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	468.019614696524	0	9.93591196618007						208	12	4	NaN	NaN	NaN	0.00030058	1	18306	96.946	68.299	1	62918			13534	1526	11396	11685	13534	13534		
LVEDHLAVQSLIR	13	Unmodified	_LVEDHLAVQSLIR_			0	0	0	Q02218;Q9ULD0	Q02218	Q02218	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.92774	1491.84093	1.2816	0.00095729	-0.28323	-0.00021155	0.99841	0.00074574	746.927720442652	11.403	0.062098	11.403	11.385	11.447	0	372	22	1.07593298845566	0.0140441447605724	1.07593298845566	434.930560487871	0	5.67714515478883						117	8	3	NaN	NaN	NaN	0.00019355	1	18307	58.476	45.894	1	22601			13535	1526	11396	11685	13535	13535		
LVEDMENK	8	Unmodified	_LVEDMENK_			0	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.23405	976.453547	0.76401	0.00037378	3.0991	0.0015162	3.8631	0.00189	489.234767544872	3.6608	0.20391	3.6608	3.5721	3.776	0	738	37	0.829104889055312	0.0244840671338465	0.829104889055312	336.774650512268	0	9.94519904654669						317	24	2	NaN	NaN	NaN	0.010353	1	3759	67.903	40.198	1	184900			13536	1100	11397	11686	13536	13536		
LVEEHLDSEIQK	12	Unmodified	_LVEEHLDSEIQK_			0	0	0	O14530	O14530	O14530	TXNDC9	Thioredoxin domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.372463	1438.73037	2.7343	0.0019697	-2.1082	-0.0015187	0.62615	0.00045106	720.370627104776	6.0283	0.133	6.0283	5.9929	6.1259	0	441	49	1.02971785871157	0.0322051603576423	1.02971785871157	416.389959912429	0	13.0228929379463						418	16	4	NaN	NaN	NaN	0.0005331	1	16638	85.622	60.009	1	133920			13537	101	11398	11687	13537	13537		
LVEGILHAPDAGWGNLVYVVNYPK	24	Unmodified	_LVEGILHAPDAGWGNLVYVVNYPK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.467229	2623.37986	0.92494	0.00080975	-0.062299	-5.4541E-05	0.86264	0.00075521	875.801585376825	18.248	0.15073	18.248	18.178	18.328	0	444	64	1.02770517576159	0.0422780386363306	1.02770517576159	620.674668983516	0	25.5334975971399						827	18	4	NaN	NaN	NaN	0.028897	1	37332	34.33	30.756	1	161160			13538	1634	11399	11688	13538	13538		
LVEGLQGQTWAPDWVEELR	19	Unmodified	_LVEGLQGQTWAPDWVEELR_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1113.56312	2225.11168	0.7133	0.00079431	-0.20173	-0.00022464	0.51157	0.00056967	1114.06411016359	18.151	0.088647	18.151	18.115	18.204	0	129	70	1.23753038177212	0.0456153113582645	1.23753038177212	498.735803329958	0	18.3833781291355						524	11	4	NaN	NaN	NaN	4.7771E-09	1	34944	58.794	51.587	1	122800			13539	6	11400	11689	13539	13539		
LVEGPPPPPEPPK	13	Unmodified	_LVEGPPPPPEPPK_			0	0	0	Q9NWU5	Q9NWU5	Q9NWU5	MRPL22	39S ribosomal protein L22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.374278	1352.734	1.265	0.00085689	-1.0932	-0.00074047	0.17187	0.00011642	677.373574349165	7.1102	0.20403	7.1102	6.9683	7.1723	0	507	40	0.985374541851584	0.0262445464858834	0.985374541851584	398.699856492425	0	10.6190047268407						335	24	2	NaN	NaN	NaN	0.050425	1	13982	25.613	23.454	1	86532			13540	3086	11401	11690	13540	13540		
LVEHFCAEFK	10	Unmodified	_LVEHFCAEFK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	427.209508	1278.60669	-1.1403	-0.00048714	-0.40723	-0.00017397	-1.5475	-0.00066111	427.209370603922	7.802	0.21283	7.802	7.7576	7.9704	0	783	31	0.798467866007927	0.0204460030373547	0.798467866007927	484.891175226294	0	12.4163875135393						432	25	4	NaN	NaN	NaN	0.069616	1	11718	17.47	9.8233	1	132640			13541	2415	11402	11691	13541	13541		
LVEHFCAEFK	10	Unmodified	_LVEHFCAEFK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.310623	1278.60669	1.896	0.001214	1.8545	0.0011874	3.7505	0.0024015	640.312269593631	7.8108	0.18628	7.8108	7.7576	7.9438	0	504	28	0.987393073566096	0.0181642753536437	0.987393073566096	399.750759524956	0	7.35389285506608						386	22	4	NaN	NaN	NaN	0.00097445	1	11720	83.358	65.022	1	110820			13542	2415	11402	11691	13542	13542		
LVEHGLNETIHIR	13	Unmodified	_LVEHGLNETIHIR_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.951085	1529.83143	-0.24893	-0.00012719	-0.22679	-0.00011588	-0.47571	-0.00024307	510.951557647048	6.7909	0.079825	6.7909	6.7555	6.8353	0	726	22	0.837263974740672	0.0142734399244295	0.837263974740672	507.559137071581	0	8.65272491071937						147	10	3	NaN	NaN	NaN	0.00019182	1	19440	99.174	90.197	1	48840			13543	2131	11403	11692	13543	13543		
LVEHLHNFILFR	12	Unmodified	_LVEHLHNFILFR_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.292782	1536.85652	-0.90425	-0.00046415	-0.88311	-0.00045329	-1.7874	-0.00091744	513.292225807572	12.272	0.097577	12.272	12.236	12.334	0	726	28	0.837263974740672	0.0183515663260597	0.837263974740672	507.538360728967	0	11.1244770716693						199	12	4	NaN	NaN	NaN	0.00021061	1	19643	76.572	56.389	1	49417			13544	876	11404	11693	13544	13544		
LVEIVHPSQEEDR	13	Unmodified	_LVEIVHPSQEEDR_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.894094	1549.77364	2.2981	0.0017831	-2.5176	-0.0019534	-0.21946	-0.00017028	775.891576774851	5.8066	0.18619	5.8066	5.7268	5.913	0	390	31	1.06389100039157	0.0200810554330217	1.06389100039157	429.914973210147	0	8.11469070171813						266	22	3	NaN	NaN	NaN	0.00037496	1	20046	55.754	34.604	1	62396			13545	1962	11405	11694	13545	13545		
LVELLMHNDYK	11	Unmodified	_LVELLMHNDYK_			0	0	0	O60684;O15131;P52294	O60684;P52294	O60684	KPNA6;KPNA5;KPNA1	Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.907717	1373.70132	-1.3261	-0.00060857	0.26232	0.00012038	-1.0638	-0.00048819	458.907921976704	9.9928	0.079791	9.9928	9.9573	10.037	0	756	31	0.816857749704129	0.0204232585244036	0.816857749704129	495.692330398192	0	12.3934095207559						170	10	3	NaN	NaN	NaN	0.064549	1	14623	15.148	5.06	1	45939			13546	274;1208	11406	11695	13546	13546		
LVENCVCLLR	10	Unmodified	_LVENCVCLLR_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.331033	1274.64751	1.3501	0.0008618	1.1176	0.00071337	2.4676	0.0015752	638.331666592053	10.055	0.19506	10.055	9.9396	10.135	0	543	37	0.961130371139249	0.0242609491796308	0.961130371139249	389.131098986367	0	9.82248621020261						304	23	4	NaN	NaN	NaN	0.02017	1	11624	47.561	34.287	1	72220			13547	276	11407	11696	13547	13547		
LVEQHGSDIWWTLPPEQLLPK	21	Unmodified	_LVEQHGSDIWWTLPPEQLLPK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.440792	2485.30055	0.97754	0.00081081	-1.5223	-0.0012626	-0.54474	-0.00045183	829.774143044101	17.77	0.16847	17.77	17.699	17.867	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	573.304963912587	0	11.003795389089						158	20	2	NaN	NaN	NaN	0.035003	1	36760	7.749	7.7066	1	40968			13548	3037	11408	11697	13548	13548		
LVEQLDIEETEQSK	14	Unmodified	_LVEQLDIEETEQSK_			0	0	0	Q92552	Q92552	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.917432	1659.82031	1.9964	0.0016588	-1.2989	-0.0010792	0.69751	0.00057957	830.915979102614	9.3898	0.12413	9.3898	9.3366	9.4608	0	372	49	1.07593298845566	0.0321031230176227	1.07593298845566	434.525756311976	0	12.965151137555						326	15	2	NaN	NaN	NaN	0.00019903	1	23336	66.953	49.222	1	111540			13549	2412	11409	11698	13549	13549		
LVEQYTK	7	Unmodified	_LVEQYTK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.742368	879.470183	-1.408	-0.00062057	1.4736	0.00064946	0.065549	2.889E-05	440.74266704286	3.3503	0.14186	3.3503	3.3149	3.4567	0	777	34	0.802556497112065	0.0224890390033184	0.802556497112065	326.48970215611	0	9.14881341362479						188	17	3	NaN	NaN	NaN	0.022887	1	2002	66.087	39.864	1	54028			13550	1852	11410	11699	13550	13550		
LVESDAEAEAVR	12	Unmodified	_LVESDAEAEAVR_			0	0	0	Q9BZJ0	Q9BZJ0	Q9BZJ0	CRNKL1	Crooked neck-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.822606	1287.63066	1.4697	0.00094772	-3.6937	-0.0023818	-2.224	-0.0014341	644.82189324399	5.3544	0.14191	5.3544	5.2835	5.4254	0	570	61	0.942920803299286	0.0404741262657745	0.942920803299286	381.717381575179	0	16.3849153032323						246	17	2	NaN	NaN	NaN	0.0020696	1	11986	64.906	56.432	1	64703			13551	2813	11411	11700	13551	13551		
LVESLPQEIK	10	Unmodified	_LVESLPQEIK_			0	0	0	P52815	P52815	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.334621	1154.65469	0.9837	0.00056891	0.054263	3.1382E-05	1.038	0.00060029	578.334793372729	8.9198	0.15092	8.9198	8.8399	8.9908	0	588	67	0.93076847747433	0.0445708984130808	0.93076847747433	377.258001243612	0	18.0654249213277						667	18	4	NaN	NaN	NaN	5.4564E-05	1	8201	105.36	91.71	1	346270			13552	1224	11412	11701	13552	13552		
LVEVDSGR	8	Unmodified	_LVEVDSGR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.735074	873.455596	-0.84042	-0.00036788	2.0193	0.00088391	1.1789	0.00051603	437.735719540878	3.5278	0.50542	3.5278	3.4746	3.98	0	747	64	0.822982596624503	0.0428978101716307	0.822982596624503	334.834704857413	0	17.4531948388222						582	58	3	NaN	NaN	NaN	0.016891	1	1911	58.286	33.435	1	160450			13553	784	11413	11702	13553	13553		
LVEVNGVNVEGETHHQVVQR	20	Unmodified	_LVEVNGVNVEGETHHQVVQR_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.38909	2242.14544	1.4204	0.001063	0.42567	0.00031857	1.8461	0.0013816	748.389069025314	6.8264	0.062051	6.8264	6.7998	6.8619	0	450	19	1.02367897599655	0.0120802678891629	1.02367897599655	618.796775529398	0	7.30231937221151						120	8	4	NaN	NaN	NaN	0.011101	1	35123	36.96	34.719	1	24035			13554	1856	11414	11703	13554	13554		
LVEWCEAK	8	Unmodified	_LVEWCEAK_			0	0	0	P52306	P52306	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.75241	1033.49027	0.44274	0.00022923	-0.32511	-0.00016832	0.11764	6.0906E-05	517.753006143044	6.7023	0.16846	6.7023	6.6402	6.8087	0	702	31	0.853568545818287	0.0203693921717962	0.853568545818287	346.445706719087	0	8.26751231751518						240	20	4	NaN	NaN	NaN	0.057035	1	5082	29.102	19.023	1	55795			13555	1210	11415	11704	13555	13555		
LVFFAEDVGSNK	12	Unmodified	_LVFFAEDVGSNK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.340435	1324.66632	1.4218	0.00094316	-1.5127	-0.0010035	-0.0909	-6.0298E-05	663.339649195876	12.786	0.1685	12.786	12.706	12.875	0	531	49	0.969216233931596	0.0323210938061441	0.969216233931596	392.24595546462	0	13.0804849091575						362	20	4	NaN	NaN	NaN	0.047914	1	13133	30.349	25.198	1	90605			13556	523	11416	11705	13556	13556		
LVFFEVSPVSFHQVSEVLSEEK	22	Unmodified	_LVFFEVSPVSFHQVSEVLSEEK_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	846.103845	2535.28971	-0.27114	-0.00022941	0.63882	0.0005405	0.36768	0.00031109	846.438744416045	19.126	0.053208	19.126	19.091	19.144	0	516	34	0.979317271586824	0.0222192115744939	0.979317271586824	591.559462662802	0	13.421579748615						182	7	4	NaN	NaN	NaN	0.0020999	1	36973	37.886	33.289	1	32714			13557	2254	11417	11706	13557	13557		
LVFPQDLLEK	10	Unmodified	_LVFPQDLLEK_			0	0	0	Q8TCT9	Q8TCT9	Q8TCT9	HM13	Minor histocompatibility antigen H13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.344989	1200.67542	0.48902	0.00029407	-0.42062	-0.00025293	0.068409	4.1137E-05	601.34455577124	15.322	0.47007	15.322	15.056	15.526	0	564	76	0.946969335010767	0.0505681634455363	0.946969335010767	383.650830205478	0	20.4869547202663						895	54	3	NaN	NaN	NaN	0.0096326	1	9493	44.82	35.306	1	182370			13558	2346	11418	11707	13558	13558		
LVFVHSAEGNEFWSALLEK	19	Unmodified	_LVFVHSAEGNEFWSALLEK_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.040628	2175.10005	0.021649	1.5718E-05	-1.1232	-0.00081549	-1.1015	-0.00079977	726.37437174256	17.557	0.10642	17.557	17.521	17.628	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	556.613252482492	0	11.0338932227424						326	13	5	NaN	NaN	NaN	3.8743E-05	1	34383	62.494	60.761	1	94381			13559	559	11419	11708	13559	13559		
LVGAGAAAGESCPDAPR	17	Unmodified	_LVGAGAAAGESCPDAPR_			0	0	0	Q96N21	Q96N21	Q96N21	ENTHD2	AP-4 complex accessory subunit tepsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.883204	1597.75185	2.1954	0.0017561	-0.69407	-0.00055518	1.5014	0.0012009	799.882399856341	5.31	0.053179	5.31	5.2835	5.3366	0	348	25	1.09197348738011	0.0160338690553592	1.09197348738011	441.145661657525	0	6.47751237104376						95	7	3	NaN	NaN	NaN	8.6227E-07	1	21501	84.999	81.017	1	17295			13560	2588	11420	11709	13560	13560		
LVGAIVYYDGQHNDAR	16	Unmodified	_LVGAIVYYDGQHNDAR_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.94465	1789.87475	2.1207	0.0019001	-0.64804	-0.00058061	1.4727	0.0013194	896.445290257139	8.3697	0.079854	8.3697	8.3253	8.4051	0	219	28	1.17788915118882	0.0179304709178465	1.17788915118882	475.415453716377	0	7.23703326255509						158	10	3	NaN	NaN	NaN	4.4789E-07	1	26965	115.35	109.32	1	36203			13561	1064	11421	11710	13561	13561		
LVGAIVYYDGQHNDAR	16	Unmodified	_LVGAIVYYDGQHNDAR_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.632192	1789.87475	1.0813	0.00064623	4.8737	0.0029127	5.955	0.0035589	598.305983325475	8.3697	0.16853	8.3697	8.2987	8.4672	0	582	43	0.934820374997243	0.0283515051757137	0.934820374997243	565.960869542377	0	17.1646264365273						359	20	4	NaN	NaN	NaN	1.5064E-06	1	26970	83.214	77.186	1	96025			13562	1064	11421	11710	13562	13562		
LVGDFTHDQSISQK	14	Unmodified	_LVGDFTHDQSISQK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.598488	1573.77364	-0.43729	-0.00022984	1.8138	0.00095334	1.3765	0.0007235	525.599337168901	6.5072	0.1064	6.5072	6.4717	6.5781	0	744	34	0.82502364452135	0.0224484086173647	0.82502364452135	500.013808233266	0	13.6050819344178						260	13	4	NaN	NaN	NaN	0.0029527	1	20782	60	41.493	1	71227			13563	2422	11422	11711	13563	13563		
LVGDFTHDQSISQK	14	Unmodified	_LVGDFTHDQSISQK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.894094	1573.77364	2.2147	0.001745	3.475	0.002738	5.6897	0.0044829	787.896659798959	6.4983	0.14187	6.4983	6.4717	6.6136	0	408	28	1.0518390438467	0.0180766890154731	1.0518390438467	424.987393629565	0	7.30374575376362						253	17	4	NaN	NaN	NaN	0.0050797	1	20783	50.314	35.859	1	82413			13564	2422	11422	11711	13564	13564		
LVGDVDFEGVR	11	Unmodified	_LVGDVDFEGVR_			0	0	0	P13995	P13995	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.311677	1204.6088	0.91392	0.00055138	3.6138	0.0021802	4.5277	0.0027316	603.314691773965	10.684	0.17734	10.684	10.622	10.8	0	594	55	0.926715457081489	0.0364974218210178	0.926715457081489	375.431320087232	0	14.7858494744416						647	21	4	NaN	NaN	NaN	0.0060449	1	9598	61.48	56.573	1	309560			13565	691	11423	11712	13565	13565		
LVGEFLEVTCINPTFICDHPQIMSPLAK	28	Unmodified	_LVGEFLEVTCINPTFICDHPQIMSPLAK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1077.20799	3228.60215	1.0589	0.0011407	0.79069	0.00085174	1.8496	0.0019924	1077.87789259414	19.233	0.079812	19.233	19.197	19.277	0	279	49	1.13799159301878	0.0319663599333924	1.13799159301878	686.601770657873	0	19.2867499781185						459	10	7	NaN	NaN	NaN	6.677E-10	1	38481	78.779	77.56	1	138140			13566	1801	11424	11713	13566	13566		
LVGFISAIPANIHIYDTEK	19	Unmodified	_LVGFISAIPANIHIYDTEK_			0	0	0	P30419	P30419	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.049124	2100.12554	0.64478	0.00045202	-0.75641	-0.00053028	-0.11163	-7.8257E-05	701.383192240203	16.253	0.20397	16.253	16.147	16.351	0	453	70	1.02166545906632	0.0463429143317576	1.02166545906632	617.836554779598	0	28.0251683905863						811	24	5	NaN	NaN	NaN	0.039348	1	33325	26.682	21.6	1	232370			13567	909	11425	11714	13567	13567		
LVGPEEALSPGEAR	14	Unmodified	_LVGPEEALSPGEAR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.87263	1423.73071	1.9942	0.0014216	-0.12971	-9.2468E-05	1.8645	0.0013292	712.87275994901	8.7599	0.28412	8.7599	8.6357	8.9198	0	468	40	1.01159370163332	0.0261938098951453	1.01159370163332	409.102073387399	0	10.5931283683532						807	33	4	NaN	NaN	NaN	0.033053	1	16202	46.068	37.091	1	316150			13568	268	11426	11715	13568	13568		
LVGQGASAVLLDLPNSGGEAQAK	23	Unmodified	_LVGQGASAVLLDLPNSGGEAQAK_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.08696	2194.15936	0.92747	0.0010184	0.022304	2.4491E-05	0.94977	0.0010429	1098.58853527466	14.019	0.15072	14.019	13.966	14.116	0	84	88	1.26725910986255	0.0574283603044985	1.26725910986255	510.761450086433	0	23.1461682594598						1442	18	5	NaN	NaN	NaN	1.2798E-13	1	34614	143.86	141.76	1	627430			13569	2667	11427	11716	13569	13569		
LVGQSIIAYLQK	12	Unmodified	_LVGQSIIAYLQK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.89792	1331.78129	1.0729	0.00071554	-0.043633	-2.9099E-05	1.0293	0.00068644	666.89773915262	15.393	0.16859	15.393	15.34	15.508	0	483	88	1.00151498427745	0.0584162499589552	1.00151498427745	405.295036166292	0	23.6400019086034						447	20	2	NaN	NaN	NaN	8.9833E-06	1	13361	123.42	102.14	1	237870			13570	1241	11428	11717	13570	13570		
LVGSQEELASWGHEYVR	17	Unmodified	_LVGSQEELASWGHEYVR_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.481596	1958.94864	1.7427	0.0017087	-0.34404	-0.00033733	1.3986	0.0013713	980.481446607835	11.287	0.053211	11.287	11.261	11.314	0	177	43	1.2057522832638	0.0278401917044975	1.2057522832638	486.338424161178	0	11.2293007028443						162	7	3	NaN	NaN	NaN	0.0001455	1	30882	58.508	55.423	1	28432			13571	1642	11429	11718	13571	13571		
LVGSQEELASWGHEYVR	17	Unmodified	_LVGSQEELASWGHEYVR_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.990156	1958.94864	1.7078	0.0011169	0.94375	0.0006172	2.6516	0.0017341	654.325021461361	11.287	0.27496	11.287	11.199	11.474	0	525	64	0.973257487423603	0.0424537385522985	0.973257487423603	588.840846958142	0	25.6853871546888						796	32	6	NaN	NaN	NaN	9.9293E-07	1	30883	102.57	88.789	1	505730			13572	1642	11429	11718	13572	13572		
LVGSVNLFSDENVPR	15	Unmodified	_LVGSVNLFSDENVPR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.430844	1644.84713	2.2681	0.0018676	-0.82059	-0.0006757	1.4475	0.0011919	823.429025687928	13.407	0.24833	13.407	13.336	13.584	0	339	55	1.09798411722691	0.0360563412671218	1.09798411722691	443.464728406135	0	14.5627931556305						664	29	4	NaN	NaN	NaN	1.344E-06	1	22889	117.21	109.65	1	192290			13573	2698	11430	11719	13573	13573		
LVHANFGTK	9	Unmodified	_LVHANFGTK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	329.518781	985.534515	-1.2718	-0.00041908	0.42816	0.00014109	-0.84364	-0.000278	329.519014176169	3.5012	0.24827	3.5012	3.4746	3.7228	0	897	25	0.720567078607086	0.0164436473385462	0.720567078607086	438.969072187311	0	10.0174610107507						244	29	3	NaN	NaN	NaN	0.024965	1	3964	53.878	31.95	1	61861			13574	495	11431	11720	13574	13574		
LVHDMNHPPSGEYFGQCGGCGEDVVGDGAGVVALDR	36	Unmodified	_LVHDMNHPPSGEYFGQCGGCGEDVVGDGAGVVALDR_			0	0	0	Q15654	Q15654	Q15654	TRIP6	Thyroid receptor-interacting protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	943.670071	3770.65118	0.55481	0.00052356	0.12434	0.00011734	0.67915	0.0006409	944.17114683685	12.201	0.035459	12.201	12.192	12.227	0	555	40	0.953040030838688	0.0262990708755764	0.953040030838688	766.208733244993	0	21.1434747010185						91	5	3	NaN	NaN	NaN	1.3624E-07	1	38728	29.149	29.043	1	14662			13575	1862	11432	11721	13575	13575		
LVHEGPLTWR	10	Unmodified	_LVHEGPLTWR_			0	0	0	Q92888	Q92888	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	403.224257	1206.65094	-1.7252	-0.00069566	-0.63402	-0.00025565	-2.3593	-0.00095131	403.223694155003	7.8818	0.079802	7.8818	7.8374	7.9172	0	876	16	0.734948245421186	0.0102665320495471	0.734948245421186	446.60101981681	0	6.23859395797604						69	10	2	NaN	NaN	NaN	0.068858	1	9647	13.274	9.9287	1	13732			13576	2439	11433	11722	13576	13576		
LVHHILQDMYK	11	Unmodified	_LVHHILQDMYK_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.251707	1395.73329	-1.4767	-0.0006885	0.43957	0.00020495	-1.0371	-0.00048355	466.252118280438	6.8264	0.12411	6.8264	6.7998	6.9239	0	783	34	0.798467866007927	0.0224921689856458	0.798467866007927	484.456724852154	0	13.6467389427779						214	15	4	NaN	NaN	NaN	0.0036404	1	15325	37.591	32.684	1	65053			13577	3103	11434	11723	13577	13577		
LVHHILQDMYK	11	Unmodified	_LVHHILQDMYK_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.873922	1395.73329	1.8662	0.0013042	-0.71467	-0.00049946	1.1515	0.00080477	698.873715761623	6.8353	0.062059	6.8353	6.8087	6.8707	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	418.953752166342	0	7.32398425348362						165	8	4	NaN	NaN	NaN	7.4786E-05	1	15326	66.664	61.168	1	35026			13578	3103	11434	11723	13578	13578		
LVHLPSCTVFSNFPVIK	17	Unmodified	_LVHLPSCTVFSNFPVIK_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.357123	1957.04954	-0.56301	-0.00036785	-0.89328	-0.00058363	-1.4563	-0.00095148	653.690682583652	15.89	0.133	15.89	15.81	15.943	0	645	85	0.892219381832517	0.056939393815902	0.892219381832517	539.81481048948	0	34.4497426395146						694	16	4	NaN	NaN	NaN	3.4584E-05	1	30848	143.22	120.26	1	157650			13579	3431	11435	11724	13579	13579		
LVHQNSASDDAEASMISK	18	Unmodified	_LVHQNSASDDAEASMISK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.946729	1901.87891	2.9959	0.0028519	-1.7039	-0.001622	1.292	0.0012299	952.445470266872	5.0706	0.017715	5.0706	5.0617	5.0795	0	216	25	1.17988115188462	0.0159371013447664	1.17988115188462	476.003794024611	0	6.42956342996592						45	3	2	NaN	NaN	NaN	0.0027486	1	29640	37.146	34.431	1	7165.8			13580	1694	11436	11725	13580	13580		
LVHQNSASDDAEASMISK	18	Unmodified	_LVHQNSASDDAEASMISK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.966912	1901.87891	1.1602	0.0007367	1.815	0.0011524	2.9752	0.0018891	634.967531274037	5.0706	0.06205	5.0706	5.044	5.1061	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	522.696564791974	0	11.0869190114802						124	8	3	NaN	NaN	NaN	0.0016353	1	29641	52.201	42.29	1	28746			13581	1694	11436	11725	13581	13581		
LVHSLFESIMSTQESSNPNNVLK	23	Unmodified	_LVHSLFESIMSTQESSNPNNVLK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	858.767127	2573.27955	1.8945	0.001627	-2.7337	-0.0023476	-0.83912	-0.00072061	859.099221341169	15.562	0.10646	15.562	15.526	15.633	0	486	70	0.999498404980629	0.0463877641696587	0.999498404980629	603.701353762501	0	28.0184099221061						730	13	5	NaN	NaN	NaN	7.4464E-13	1	37127	129.53	116.77	1	198020			13582	141	11437	11726	13582	13582		
LVIDQIDNGFFSPK	14	Unmodified	_LVIDQIDNGFFSPK_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.919581	1591.82461	1.0983	0.00087526	2.6016	0.0020732	3.6999	0.0029485	796.921383038961	16.253	0.088684	16.253	16.209	16.298	0	318	49	1.11199926528787	0.0320191966216983	1.11199926528787	449.250225195067	0	12.9358280548317						291	11	3	NaN	NaN	NaN	1.3019E-05	1	21328	64.266	54.015	1	58187			13583	545	11438	11727	13583	13583		
LVIEEAER	8	Unmodified	_LVIEEAER_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.763832	957.513111	0.83362	0.00039994	0.32909	0.00015788	1.1627	0.00055783	479.764276335019	5.7445	0.31042	5.7445	5.6913	6.0017	0	708	52	0.849494101904619	0.0346496301199423	0.849494101904619	345.151346187115	0	14.0782219134542						656	36	4	NaN	NaN	NaN	0.00011309	1	3384	130	29.246	1	423990			13584	1175	11439	11728	13584	13584		
LVIIEGDLER	10	Unmodified	_LVIIEGDLER_			0	0	0	P06753	P06753	P06753	TPM3	Tropomyosin alpha-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.832246	1155.64994	1.256	0.000727	0.15233	8.8173E-05	1.4083	0.00081517	578.83258243455	11.048	0.21283	11.048	10.959	11.172	0	591	49	0.928742107665821	0.0324241729460041	0.928742107665821	376.432848662048	0	13.1419946256674						709	25	4	NaN	NaN	NaN	3.1662E-07	1	8231	146.03	112.63	1	687960			13585	548	11440	11729	13585	13585		
LVIIESDLER	10	Unmodified	_LVIIESDLER_			0	0	0	P09493	P09493	P09493	TPM1	Tropomyosin alpha-1 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.837528	1185.6605	1.2835	0.0007622	0.62918	0.00037363	1.9127	0.0011358	593.837605308839	11.039	0.11528	11.039	11.004	11.119	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	389.443985072243	0	8.19312012254488						245	14	3	NaN	NaN	NaN	0.01032	1	9039	52.591	25.644	1	66580			13586	602	11441	11730	13586	13586		
LVILANNCPALR	12	Unmodified	_LVILANNCPALR_			0	0	0	P62888	P62888	P62888	RPL30	60S ribosomal protein L30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.387197	1352.75984	1.5779	0.0010688	-0.12019	-8.1414E-05	1.4577	0.00098742	677.387493385471	11.146	0.20393	11.146	11.083	11.287	0	492	46	0.995464410099171	0.0302654273538991	0.995464410099171	402.782312722348	0	12.2459213021179						687	24	5	NaN	NaN	NaN	3.2938E-17	1	13986	214.81	185.5	1	431310			13587	1411	11442	11731	13587	13587		
LVILDEADAMTQDAQNALR	19	Unmodified	_LVILDEADAMTQDAQNALR_			0	0	0	P40937	P40937	P40937	RFC5	Replication factor C subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.02551	2086.03647	0.95325	0.00099521	0.018131	1.8929E-05	0.97138	0.0010141	1044.52742446675	18.355	0.12412	18.355	18.311	18.435	0	120	58	1.2434810169581	0.0376873717567214	1.2434810169581	501.341231135026	0	15.1946295094867						364	15	4	NaN	NaN	NaN	6.3789E-11	1	33127	98.865	87.186	1	73850			13588	1024	11443	11732	13588	13588		
LVILEGELER	10	Unmodified	_LVILEGELER_			0	0	0	CON__Q3SX28;P07951;P67936	CON__Q3SX28;P67936	P67936	TPM2;TPM4	Tropomyosin beta chain;Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.840071	1169.66559	0.17701	0.0001037	0.29615	0.0001735	0.47316	0.0002772	585.840386308566	11.953	0.15075	11.953	11.899	12.05	0	597	70	0.924688525662974	0.0466000786079988	0.924688525662974	374.736906234034	0	18.8850286374041						904	18	5	NaN	NaN	NaN	2.4337E-10	1	8609	171.75	139.62	1	750650		+	13589	1443;41	11444	11733	13589	13589		
LVILEGELERAEER	14	Unmodified	_LVILEGELERAEER_			0	0	1	P67936	P67936	P67936	TPM4	Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.636943	1654.889	-0.084999	-4.6974E-05	-1.6553	-0.00091477	-1.7403	-0.00096174	552.636395295266	11.483	0.22175	11.483	11.447	11.669	0	678	49	0.869855008346864	0.0325503275293179	0.869855008346864	526.959149431931	0	19.7190252904084						639	26	4	NaN	NaN	NaN	0.01561	1	23194	34.193	24.931	1	235910			13590	1443	11445	11734	13590	13590		
LVINGNPITIFQER	14	Unmodified	_LVINGNPITIFQER_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.454122	1612.89369	1.7949	0.0014493	0.63936	0.00051626	2.4343	0.0019656	807.454935995616	16.271	0.32806	16.271	16.165	16.493	0	399	79	1.0578662689527	0.0522107798796603	1.0578662689527	427.332221968765	0	21.0908970552449						2074	38	5	NaN	NaN	NaN	5.7386E-17	1	21988	208.63	164.06	1	2546900			13591	513	11446	11735	13591	13591		
LVINGNPITIFQERDPSK	18	Unmodified	_LVINGNPITIFQERDPSK_			0	0	1	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.04074	2040.10039	1.2041	0.00082005	-1.2534	-0.0008536	-0.049255	-3.3544E-05	681.374132222761	14.453	0.14188	14.453	14.391	14.533	0	564	73	0.946969335010767	0.0485487941124936	0.946969335010767	572.775783559165	0	29.3648089336704						951	17	4	NaN	NaN	NaN	2.6366E-05	1	32351	63.79	50.572	1	295230			13592	513	11447	11736	13592	13592		
LVINGNPITIFQERDPSK	18	Unmodified	_LVINGNPITIFQERDPSK_			0	0	1	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.05747	2040.10039	0.86257	0.00088073	-0.80108	-0.00081795	0.061485	6.278E-05	1021.55817301533	14.453	0.079815	14.453	14.409	14.489	0	93	49	1.26131825079847	0.031704128038238	1.26131825079847	508.608484231621	0	12.7842346649671						235	10	3	NaN	NaN	NaN	0.069213	1	32352	31.722	29.88	1	44618			13593	513	11447	11736	13593	13593		
LVINTEEVFRPYAK	14	Unmodified	_LVINTEEVFRPYAK_			0	0	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.310279	1677.90901	0.44092	0.00024705	-1.875	-0.0010506	-1.4341	-0.00080355	560.308470121713	12.263	0.20396	12.263	12.21	12.414	0	636	49	0.898312834727904	0.0324871583843739	0.898312834727904	544.137013081052	0	19.678518043348						660	24	5	NaN	NaN	NaN	1.6173E-05	1	23865	104.39	85.071	1	340650			13594	1465	11448	11737	13594	13594		
LVINTEEVFRPYAK	14	Unmodified	_LVINTEEVFRPYAK_			0	0	1	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.96178	1677.90901	1.9226	0.0016149	1.3164	0.0011057	3.239	0.0027206	839.963107476479	12.263	0.11529	12.263	12.227	12.343	0	258	34	1.15196821829984	0.0219542113279454	1.15196821829984	465.191772317836	0	8.8656252101818						310	14	4	NaN	NaN	NaN	0.0018372	1	23869	110.44	101.63	1	101060			13595	1465	11448	11737	13595	13595		
LVIPSELGYGER	12	Unmodified	_LVIPSELGYGER_			0	0	0	P26885	P26885	P26885	FKBP2	Peptidyl-prolyl cis-trans isomerase FKBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.861534	1331.70852	0.53623	0.00035759	0.7433	0.00049568	1.2795	0.00085327	666.862147212789	12.015	0.15961	12.015	11.961	12.121	0	519	46	0.97729762293174	0.0302947379404193	0.97729762293174	395.494925915756	0	12.2597403863942						553	19	5	NaN	NaN	NaN	1.2904E-07	1	13356	104.39	79.141	1	403050			13596	860	11449	11738	13596	13596		
LVIVGDGACGK	11	Unmodified	_LVIVGDGACGK_			0	0	0	P61586;P08134	P61586	P61586	RHOA;RHOC	Transforming protein RhoA;Rho-related GTP-binding protein RhoC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.792066	1087.56958	1.1267	0.00061382	0.7254	0.00039519	1.8521	0.001009	544.793408870974	6.5427	0.26603	6.5427	6.4185	6.6845	0	645	58	0.892219381832517	0.0386079489287342	0.892219381832517	361.896477177983	0	15.6599161516525						807	31	4	NaN	NaN	NaN	5.0302E-05	1	6409	86.205	59.749	1	702880			13597	574	11450	11739	13597	13597		
LVIWGTDVNVAACK	14	Unmodified	_LVIWGTDVNVAACK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.408326	1544.8021	1.9507	0.0015087	-2.0632	-0.0015957	-0.1125	-8.7005E-05	773.407704652101	14.524	0.22166	14.524	14.444	14.666	-1.7764E-15	408	40	1.0518390438467	0.0261215838858069	1.0518390438467	425.056926109752	0	10.5559498067437						479	26	4	NaN	NaN	NaN	4.0216E-06	1	19887	87.942	72.794	1	159700			13598	950	11451	11740	13598	13598		
LVLADLLEPVK	11	Unmodified	_LVLADLLEPVK_			0	0	0	Q9BVJ6	Q9BVJ6	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.376289	1208.73803	0.32032	0.00019392	-0.81854	-0.00049553	-0.49822	-0.00030161	605.375876150849	17.69	0.15076	17.69	17.637	17.787	0	567	67	0.944945209309785	0.0445708984130808	0.944945209309785	382.801771682967	0	18.0558816637542						582	18	3	NaN	NaN	NaN	0.0029154	1	9706	72.365	60.298	1	172910			13599	2765	11452	11741	13599	13599		
LVLDAFALPLTNLFK	15	Unmodified	_LVLDAFALPLTNLFK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.995091	1673.97563	1.7075	0.0014309	0.26954	0.00022588	1.9771	0.0016568	837.995606064843	20.173	0.062063	20.173	20.164	20.226	0	318	46	1.11199926528787	0.0300159293461491	1.11199926528787	449.060018656203	0	12.1213693326277						233	8	5	NaN	NaN	NaN	9.2999E-12	1	23745	153.25	136.26	1	180530			13600	1264	11453	11742	13600	13600		
LVLDPGEAPLVPVYSGK	17	Unmodified	_LVLDPGEAPLVPVYSGK_			0	0	0	Q8NCF5	Q8NCF5	Q8NCF5	NFATC2IP	NFATC2-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.49037	1752.96619	1.9125	0.0016782	0.30709	0.00026947	2.2195	0.0019476	877.492022060729	15.296	0.15074	15.296	15.234	15.384	0	285	37	1.13399579921816	0.0239747667739112	1.13399579921816	457.773448544669	0	9.6781766490796						394	18	4	NaN	NaN	NaN	0.00018497	1	25989	76.563	57.007	1	97037			13601	2300	11454	11743	13601	13601		
LVLDSIIWAFK	11	Unmodified	_LVLDSIIWAFK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.884281	1303.75401	0.63683	0.00041577	-0.39991	-0.00026109	0.23692	0.00015468	652.884582923047	19.88	0.026628	19.88	19.871	19.898	0	456	28	1.01965166402748	0.0181241570782431	1.01965166402748	412.725710705817	0	7.33613828620219						86	4	3	NaN	NaN	NaN	0.049797	1	12482	17.47	11.604	1	25677			13602	135	11455	11744	13602	13602		
LVLDSIIWAFK	11	Unmodified	_LVLDSIIWAFK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.884281	1303.75401	0.6109	0.00039885	0.062733	4.0957E-05	0.67363	0.00043981	652.883879299854	19.88	0.053194	19.88	19.862	19.915	0	525	61	0.973257487423603	0.0404349276895257	0.973257487423603	393.946678474959	0	16.3668974176931						170	7	4	NaN	NaN	NaN	0.047209	1	12483	30.918	24.228	1	55112			13603	135	11455	11744	13603	13603		
LVLEQVVTSIASVADTAEEK	20	Unmodified	_LVLEQVVTSIASVADTAEEK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.379087	2101.11543	0.66582	0.000467	-0.55487	-0.00038917	0.11096	7.7825E-05	701.712963360132	20.04	0.062056	20.04	20.031	20.093	0	480	46	1.00353128488872	0.0302445172563094	1.00353128488872	606.868313182568	0	18.2898524906404						259	8	6	NaN	NaN	NaN	5.1219E-11	1	33334	199.04	176.64	1	201690			13604	74	11456	11745	13604	13604		
LVLEQVVTSIASVADTAEEK	20	Unmodified	_LVLEQVVTSIASVADTAEEK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.56499	2101.11543	1.6947	0.0017821	-0.023935	-2.5169E-05	1.6707	0.0017569	1052.06616859669	20.04	0.03547	20.04	20.031	20.066	0	108	127	1.25141139212444	0.0833261963362291	1.25141139212444	504.514620091064	0	33.5934965533907						463	5	5	NaN	NaN	NaN	9.3902E-12	1	33335	120.37	109.61	1	153720			13605	74	11456	11745	13605	13605		
LVLEVAQHLGESTVR	15	Unmodified	_LVLEVAQHLGESTVR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.9773	1649.91007	-0.36908	-0.00020336	-0.57904	-0.00031904	-0.94812	-0.00052239	550.976990663015	11.527	0.27497	11.527	11.465	11.74	0	708	106	0.849494101904619	0.0713673009410009	0.849494101904619	514.63736310804	0	43.235473308252						1118	32	5	NaN	NaN	NaN	0.0072468	1	23053	30.875	28.891	1	467570			13606	541	11457	11746	13606	13606		
LVLEVAQHLGESTVR	15	Unmodified	_LVLEVAQHLGESTVR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.962311	1649.91007	2.3672	0.0019552	0.30534	0.0002522	2.6726	0.0022074	825.962896815655	11.518	0.39024	11.518	11.465	11.855	0	261	70	1.14997238118939	0.0459295397578781	1.14997238118939	464.450355553207	0	18.5500029564872						1304	45	5	NaN	NaN	NaN	4.5581E-12	1	23054	161.23	139.22	1	637410			13607	541	11457	11746	13607	13607		
LVLGPPEPPFSHVCQVGDPVLR	22	Unmodified	_LVLGPPEPPFSHVCQVGDPVLR_			0	0	0	Q9HBH1	Q9HBH1	Q9HBH1	PDF	Peptide deformylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	805.094738	2412.26239	-0.054845	-4.4156E-05	0.56923	0.00045828	0.51438	0.00041413	805.429591854304	14.843	0.10637	14.843	14.79	14.897	0	507	31	0.985374541851584	0.0201895069753196	0.985374541851584	595.383827173097	0	12.1989207363897						241	13	5	NaN	NaN	NaN	0.012983	1	36406	37.886	34.812	1	41130			13608	2952	11458	11747	13608	13608		
LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEK	37	Unmodified	_LVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1024.2398	4092.9301	1.3615	0.0013945	1.2277	0.0012574	2.5892	0.002652	1024.74261459279	13.185	0.070953	13.185	13.159	13.23	1.7764E-15	468	94	1.01159370163332	0.0624104766690106	1.01159370163332	813.048025064828	0	50.1611612618426						557	9	6	NaN	NaN	NaN	0.06709	1	38777	1.3338	1.3313	1	98168			13609	1582	11459	11748	13609	13609		
LVLLELNFLPTTGTK	15	Unmodified	_LVLLELNFLPTTGTK_			0	0	0	P48556	P48556	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.990006	1657.96546	1.7733	0.0014718	1.2929	0.0010731	3.0662	0.0025449	830.492207052434	19.383	0.062126	19.383	19.357	19.419	0	363	43	1.08195024817156	0.0280747465403823	1.08195024817156	436.959921377355	0	11.3383578049971						229	8	3	NaN	NaN	NaN	0.00010597	1	23271	93.772	84.51	1	58335			13610	1110	11460	11749	13610	13610		
LVLPAPQISDAELQEVVK	18	Unmodified	_LVLPAPQISDAELQEVVK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.051323	1948.08809	1.2478	0.0012166	0.14945	0.00014572	1.3972	0.0013623	975.553149343902	16.635	0.12414	16.635	16.59	16.714	0	180	34	1.203763835057	0.0218759356051808	1.203763835057	485.55542683468	0	8.82397272690827						375	15	4	NaN	NaN	NaN	0.0028655	1	30687	35.45	30.633	1	76276			13611	2640	11461	11750	13611	13611		
LVLPAPQISDAELQEVVK	18	Unmodified	_LVLPAPQISDAELQEVVK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.051323	1948.08809	1.4187	0.0013833	-0.01829	-1.7833E-05	1.4004	0.0013655	975.55263793044	16.661	0.20396	16.661	16.564	16.768	0	225	37	1.17390432875292	0.0239122235316391	1.17390432875292	473.511166798517	0	9.64533871107022						651	24	5	NaN	NaN	NaN	0.043884	1	30688	39.166	34.349	1	246540			13612	2640	11461	11750	13612	13612		
LVLSLEPLEHPLISSPSFFSK	21	Unmodified	_LVLSLEPLEHPLISSPSFFSK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.766505	2339.27768	1.4781	0.001154	3.2396	0.0025294	4.7177	0.0036834	781.103534123856	13.859	0.11528	13.859	13.788	13.903	0	489	34	0.997481546940468	0.0221885084340552	0.997481546940468	602.806771468161	0	13.4091534563748						353	14	4	NaN	NaN	NaN	0.048399	1	35961	3.441	0	1	83213			13613	2005	11462	11751	13613	13613		
LVLSQLPNFWK	11	Unmodified	_LVLSQLPNFWK_			0	0	0	Q96KP1	Q96KP1	Q96KP1	EXOC2	Exocyst complex component 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.887355	1343.76016	-0.041671	-2.804E-05	0.19193	0.00012915	0.15026	0.00010111	672.887849482437	17.424	0.070931	17.424	17.388	17.459	0	498	34	0.991429299781895	0.0221977126906285	0.991429299781895	401.176807558831	0	8.98219118024201						116	9	2	NaN	NaN	NaN	0.00081795	1	13724	67.507	51.926	1	29166			13614	2576	11463	11752	13614	13614		
LVLTQEQLHQLHSR	14	Unmodified	_LVLTQEQLHQLHSR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.984677	1700.9322	0.41932	0.00023816	0.070588	4.0093E-05	0.4899	0.00027826	567.984785384767	6.6757	0.079806	6.6757	6.6491	6.7289	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	524.375820945594	0	11.0948488955678						178	10	4	NaN	NaN	NaN	0.0017476	1	24536	43.613	42.561	1	42177			13615	1736	11464	11753	13615	13615		
LVLTQEQLHQLHSR	14	Unmodified	_LVLTQEQLHQLHSR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.473377	1700.9322	1.97	0.0016774	-1.0296	-0.00087669	0.94035	0.00080068	851.472148674118	6.6757	0.044285	6.6757	6.658	6.7023	0	249	25	1.15795408347545	0.0159590169349364	1.15795408347545	467.557165534521	0	6.44391071226323						106	6	3	NaN	NaN	NaN	1.5365E-05	1	24537	79.795	73.418	1	20607			13616	1736	11464	11753	13616	13616		
LVLVLGDLHIPHR	13	Unmodified	_LVLVLGDLHIPHR_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.636549	1480.88782	-1.1745	-0.00058093	-1.4935	-0.00073872	-2.6679	-0.0013196	494.635795107807	13.691	0.28372	13.691	13.629	13.912	0	759	40	0.814815566123307	0.0265520848430444	0.814815566123307	494.096833704759	0	16.1009455325292						657	33	4	NaN	NaN	NaN	0.0071443	1	17946	43.168	40.497	1	208590			13617	3183	11465	11754	13617	13617		
LVLVNAIYFK	10	Unmodified	_LVLVNAIYFK_			0	0	0	P30740;P50452;P50453;O75830	P30740	P30740	SERPINB1;SERPINB8;SERPINB9;SERPINI2	Leukocyte elastase inhibitor;Serpin B8;Serpin B9;Serpin I2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.360442	1178.70633	0.82136	0.0004849	-0.26518	-0.00015655	0.55618	0.00032835	590.360320771823	15.358	0.12413	15.358	15.331	15.455	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	393.565836334431	0	9.825611520503						190	15	3	NaN	NaN	NaN	0.014719	1	8856	53.878	46.728	1	59372			13618	916	11466	11755	13618	13618		
LVLVNAVYFR	10	Unmodified	_LVLVNAVYFR_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.355691	1192.69683	0.43758	0.00026139	-0.9677	-0.00057806	-0.53011	-0.00031667	597.355385350165	14.666	0.1685	14.666	14.613	14.781	0	558	40	0.951016745717027	0.0263063536302146	0.951016745717027	385.319865265136	0	10.6584460074559						429	20	4	NaN	NaN	NaN	2.127E-07	1	9246	134.85	122.78	1	249580			13619	961	11467	11756	13619	13619		
LVLVSPTSEQYDSLLR	16	Unmodified	_LVLVSPTSEQYDSLLR_			0	0	0	O00178	O00178	O00178	GTPBP1	GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.493641	1818.97273	1.411	0.0012847	1.4088	0.0012827	2.8198	0.0025674	910.494395804403	15.118	0.09755	15.118	15.083	15.18	0	225	46	1.17390432875292	0.029896443173731	1.17390432875292	473.748832749435	0	12.0652123942341						410	12	4	NaN	NaN	NaN	8.8276E-07	1	27705	86.838	79.281	1	94203			13620	58	11468	11757	13620	13620		
LVLWDINK	8	Unmodified	_LVLWDINK_			0	0	0	Q8NBQ5	Q8NBQ5	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.794935	999.575317	-1.2819	-0.00064198	-3.9932	-0.0019998	-5.2752	-0.0026418	500.792810798505	13.327	0.11531	13.327	13.283	13.398	0	735	28	0.831145085810763	0.0183617725733707	0.831145085810763	337.494915225863	0	7.45598450119127						185	14	3	NaN	NaN	NaN	0.012201	1	4282	67.903	41.679	1	44625			13621	2293	11469	11758	13621	13621		
LVMEEAPESYK	11	Unmodified	_LVMEEAPESYK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.313029	1294.6115	1.8902	0.0012255	-0.23443	-0.00015199	1.6558	0.0010735	648.312980898614	7.1634	0.20393	7.1634	7.0836	7.2875	0	507	88	0.985374541851584	0.0585941809781667	0.985374541851584	398.880847593587	0	23.7189977820063						797	24	4	NaN	NaN	NaN	0.042971	1	12198	39.039	29.646	1	336270			13622	3395	11470	11759	13622	13622		
LVMGGPQQLYHLDAYIPLQINSHESK	26	Unmodified	_LVMGGPQQLYHLDAYIPLQINSHESK_			0	0	0	Q9NWS0	Q9NWS0	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	738.632555	2950.50111	0.29173	0.00021548	3.6213	0.0026748	3.913	0.0028903	738.88719583514	16.289	0.18624	16.289	16.147	16.333	0	462	46	1.01562323939346	0.0302027620184235	1.01562323939346	817.357733295802	0	24.306711529557						273	22	3	NaN	NaN	NaN	0.052704	1	38148	3.5241	3.4964	1	73654			13623	3082	11471	11760	13623	13623		
LVNACLAEELPHIHAFEQK	19	Unmodified	_LVNACLAEELPHIHAFEQK_			0	0	0	Q9H3K6	Q9H3K6	Q9H3K6	BOLA2	BolA-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.380767	2218.12047	1.1179	0.00082768	-0.45127	-0.00033411	0.66663	0.00049356	740.715286219451	13.043	0.22168	13.043	12.946	13.167	0	477	58	1.0055473068722	0.0383150231076109	1.0055473068722	607.87699873432	0	23.1623326858065						1230	26	6	NaN	NaN	NaN	0.0029243	1	34878	42.495	42.06	1	586320			13624	2879	11472	11761	13624	13624		
LVNELTEFAK	10	Unmodified	_LVNELTEFAK_			0	0	0	CON__P02769	CON__P02769	CON__P02769			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.318971	1162.62339	0.71667	0.00041733	-3.7618	-0.0021906	-3.0451	-0.0017732	582.316604779675	11.216	0.23946	11.216	11.119	11.358	0	597	37	0.924688525662974	0.024324866464508	0.924688525662974	374.763378248748	0	9.8585295250125						420	28	4	NaN	NaN	NaN	0.0080387	1	8418	72.042	52.554	1	143250		+	13625	26	11473	11762	13625	13625		
LVNELTEK	8	Unmodified	_LVNELTEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.266207	944.517862	0.096875	4.5848E-05	-5.2972	-0.002507	-5.2003	-0.0024611	473.26376721322	4.9376	0.097527	4.9376	4.9021	4.9997	0	738	19	0.829104889055312	0.0122437340752318	0.829104889055312	336.932782097015	0	4.97562544821596						107	12	2	NaN	NaN	NaN	0.068587	1	3151	34.931	17.536	1	56869			13626	2167	11474	11763	13626	13626		
LVNHFVEEFK	10	Unmodified	_LVNHFVEEFK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.224034	1260.65027	-1.2854	-0.00054144	0.63296	0.00026662	-0.65243	-0.00027482	421.224399500253	8.6091	0.3905	8.6091	8.547	8.9375	0	798	70	0.788241307691771	0.0470815091759569	0.788241307691771	478.75355753805	0	28.5958624501112						1332	45	5	NaN	NaN	NaN	0.0055296	1	11233	76.572	69.422	1	956680			13627	618	11475	11764	13627	13627		
LVNHFVEEFK	10	Unmodified	_LVNHFVEEFK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.332413	1260.65027	1.875	0.0011838	1.6679	0.001053	3.5429	0.0022367	631.333745737496	8.6091	0.37275	8.6091	8.5382	8.9109	0	510	49	0.983355730988811	0.0323076849488658	0.983355730988811	398.176816453071	0	13.0819099686058						1080	43	5	NaN	NaN	NaN	1.7024E-07	1	11239	129.28	114.52	1	1085300			13628	618	11475	11764	13628	13628		
LVNLQHLDLLNNK	13	Unmodified	_LVNLQHLDLLNNK_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.963102	1532.86748	-0.6366	-0.00032592	-0.012548	-6.4243E-06	-0.64915	-0.00033234	511.963184280136	12.715	0.23058	12.715	12.662	12.893	0	765	79	0.810730346695089	0.0531522475844468	0.810730346695089	491.465424772447	0	32.220937631344						1253	27	5	NaN	NaN	NaN	0.00013871	1	19530	127.93	110.46	1	1177500			13629	2474	11476	11765	13629	13629		
LVNLQHLDLLNNK	13	Unmodified	_LVNLQHLDLLNNK_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.441015	1532.86748	2.8624	0.0021968	-0.42707	-0.00032775	2.4354	0.001869	767.44068280043	12.715	0.18623	12.715	12.662	12.848	1.7764E-15	330	43	1.10399226369747	0.0280360922618905	1.10399226369747	446.16332263288	0	11.3304019317247						709	22	5	NaN	NaN	NaN	4.8606E-25	1	19531	184.27	166.8	1	426140			13630	2474	11476	11765	13630	13630		
LVNQQLLADPLVPPQLTIK	19	Unmodified	_LVNQQLLADPLVPPQLTIK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.62499	2099.23543	1.5854	0.0016656	0.086756	9.1149E-05	1.6721	0.0017568	1051.12646679581	17.663	0.15074	17.663	17.61	17.761	0	105	55	1.25339330680955	0.0356818110773671	1.25339330680955	505.316612903734	0	14.3854381684725						613	18	4	NaN	NaN	NaN	4.1453E-05	1	33304	83.474	73.453	1	136510			13631	877	11477	11766	13631	13631		
LVNQWIK	7	Unmodified	_LVNQWIK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.76872	899.522887	-0.86293	-0.00038898	-2.3743	-0.0010702	-3.2372	-0.0014592	450.767694161214	8.1302	0.15961	8.1302	8.0858	8.2454	0	768	25	0.808687310729125	0.0163454259019459	0.808687310729125	328.871098105627	0	6.6472394138724						146	19	2	NaN	NaN	NaN	0.065843	1	2322	35.633	23.08	1	35979			13632	1063	11478	11767	13632	13632		
LVNSVAGCADDALAGLVACNPNLQLLQGHR	30	Unmodified	_LVNSVAGCADDALAGLVACNPNLQLLQGHR_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1049.53264	3145.57609	1.0068	0.0010566	-0.25332	-0.00026586	0.75346	0.00079078	1049.5313647988	18.151	0.12411	18.151	18.115	18.24	0	105	52	1.25339330680955	0.0337110346399527	1.25339330680955	756.314527260474	0	20.3416956901395						495	15	5	NaN	NaN	NaN	0.00019873	1	38411	71.892	68.978	1	109420			13633	1932	11479	11768	13633	13633		
LVNTGLLTLR	10	Unmodified	_LVNTGLLTLR_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.345323	1098.67609	0.17643	9.7097E-05	0.32734	0.00018015	0.50376	0.00027724	550.345619563254	12.361	0.11526	12.361	12.307	12.423	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	370.907030328525	0	9.04879025435309						244	14	3	NaN	NaN	NaN	0.00058548	1	6685	90.761	66.64	1	76122			13634	2804	11480	11769	13634	13634		
LVNWSCTLNSAISDIEVDK	19	Unmodified	_LVNWSCTLNSAISDIEVDK_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.53317	2163.05178	0.255	0.00027604	1.4517	0.0015715	1.7067	0.0018476	1083.03636021998	18.674	0.062054	18.674	18.639	18.701	0	99	52	1.25735632164274	0.0336879450035521	1.25735632164274	506.816035193345	0	13.5789596207741						281	8	4	NaN	NaN	NaN	3.3972E-07	1	34220	95.263	80.248	1	65533			13635	858	11481	11770	13635	13635		
LVNWSCTLNSAISDIEVDKK	20	Unmodified	_LVNWSCTLNSAISDIEVDKK_			0	0	1	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.722859	2291.14675	0.096313	7.3653E-05	-0.22344	-0.00017087	-0.12712	-9.7213E-05	765.057480169474	16.901	0.070969	16.901	16.874	16.945	0	474	25	1.00756305028564	0.0161248344128324	1.00756305028564	608.974808960455	0	9.74590915505462						182	9	4	NaN	NaN	NaN	2.136E-05	1	35579	73.262	67.058	1	37378			13636	858	11482	11771	13636	13636		
LVPDLLAIVQR	11	Unmodified	_LVPDLLAIVQR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.887355	1235.76016	0.56276	0.00034829	-1.1937	-0.00073874	-0.6309	-0.00039046	618.886934364013	17.725	0.14187	17.725	17.646	17.787	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	385.16626967122	0	8.19496843973161						302	17	3	NaN	NaN	NaN	0.002805	1	10504	67.507	52.745	1	85318			13637	2900	11483	11772	13637	13637		
LVPDLLAIVQR	11	Unmodified	_LVPDLLAIVQR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.887355	1235.76016	0.8811	0.0005453	-0.86202	-0.00053349	0.019083	1.181E-05	618.887005799985	17.716	0.18618	17.716	17.654	17.841	0	501	37	0.98941132619024	0.0242240595168645	0.98941132619024	400.716254468569	0	9.81085837676693						442	22	3	NaN	NaN	NaN	0.0071428	1	10505	42.075	30.715	1	138380			13638	2900	11483	11772	13638	13638		
LVPEAVGDQK	10	Unmodified	_LVPEAVGDQK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.290214	1054.56587	1.1989	0.00063335	2.4813	0.0013108	3.6801	0.0019442	528.291005550011	4.6716	0.19511	4.6716	4.6361	4.8312	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	366.158471554538	0	9.06226769357204						294	23	3	NaN	NaN	NaN	0.0010362	1	5584	67.507	51.926	1	66922			13639	1137	11484	11773	13639	13639		
LVPEEETTASENTEITSER	19	Unmodified	_LVPEEETTASENTEITSER_			0	0	0	Q96T23	Q96T23	Q96T23	RSF1	Remodeling and spacing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.00295	2133.99135	1.8147	0.0019381	-0.85294	-0.00091095	0.96172	0.0010271	1068.00211839129	7.456	0.053219	7.456	7.4383	7.4915	0	213	16	1.18187287897418	0.00995863572963818	1.18187287897418	476.431518007007	0	4.01448245607293						51	7	2	NaN	NaN	NaN	0.053833	1	33794	23.107	21.928	1	9266.4			13640	2627	11485	11774	13640	13640		
LVPFDHAESTYGLYR	15	Unmodified	_LVPFDHAESTYGLYR_			0	0	0	O95336	O95336	O95336	PGLS	6-phosphogluconolactonase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.961538	1766.86278	-0.57115	-0.00033696	-0.75016	-0.00044257	-1.3213	-0.00077953	590.295306722041	11.367	0.30158	11.367	11.199	11.5	0	747	31	0.822982596624503	0.0204090624710167	0.822982596624503	498.301662997709	0	12.357332720332						534	35	3	NaN	NaN	NaN	0.021855	1	26313	46.068	36.807	1	124690			13641	421	11486	11775	13641	13641		
LVPGGGATEIELAK	14	Unmodified	_LVPGGGATEIELAK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.882467	1353.75038	1.9767	0.00134	1.3703	0.0009289	3.347	0.0022689	677.883490467605	9.4962	0.33695	9.4962	9.3987	9.7356	0	423	73	1.04178812298108	0.0482877537659205	1.04178812298108	421.522571312517	0	19.5379249209259						1606	39	5	NaN	NaN	NaN	0.00012139	1	14027	51.454	43.896	1	1209800			13642	1174	11487	11776	13642	13642		
LVPLLDRPFDETTYEETED	19	Unmodified	_LVPLLDRPFDETTYEETED_			0	0	1	O15270	O15270	O15270	SPTLC2	Serine palmitoyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1141.53917	2281.06379	0.78613	0.0008974	0.47364	0.00054068	1.2598	0.0014381	1142.04160228245	16.041	0.097504	16.041	15.987	16.085	0	105	46	1.25339330680955	0.0297246551241719	1.25339330680955	505.051807682106	0	11.9774780363267						375	12	4	NaN	NaN	NaN	0.000563	1	35465	59.731	58.46	1	87521			13643	160	11488	11777	13643	13643		
LVPLLDTGDIIIDGGNSEYR	20	Unmodified	_LVPLLDTGDIIIDGGNSEYR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.56278	2159.11101	0.8565	0.0009255	-0.74998	-0.0008104	0.10652	0.00011511	1080.56187066616	17.796	0.097538	17.796	17.77	17.867	0	123	49	1.24149774378079	0.0317476087598902	1.24149774378079	500.429583939487	0	12.796996790669						194	12	3	NaN	NaN	NaN	0.0018086	1	34162	45.17	43.322	1	35981			13644	1205	11489	11778	13644	13644		
LVPLLDTGDIIIDGGNSEYR	20	Unmodified	_LVPLLDTGDIIIDGGNSEYR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.710948	2159.11101	0.7654	0.00055163	-0.3839	-0.00027668	0.3815	0.00027495	721.045237235886	18.107	0.1596	18.107	18.036	18.195	0	474	43	1.00756305028564	0.0282184646673942	1.00756305028564	609.199078018103	0	17.0616247326551						551	19	5	NaN	NaN	NaN	0.000406	1	34163	108.91	108.29	1	237170			13645	1205	11489	11778	13645	13645		
LVPLLDTGDIIIDGGNSEYR	20	Unmodified	_LVPLLDTGDIIIDGGNSEYR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.56278	2159.11101	1.015	0.0010968	1.6222	0.0017529	2.6373	0.0028497	1080.56706224449	18.107	0.23941	18.107	18.009	18.248	0	135	139	1.23356193185193	0.0912620622914602	1.23356193185193	497.230766663214	0	36.7864020676471						2429	28	5	NaN	NaN	NaN	2.334E-07	1	34164	104.86	98.334	1	1262300			13646	1205	11489	11778	13646	13646		
LVPLLDTGDIIIDGGNSEYRDTTR	24	Unmodified	_LVPLLDTGDIIIDGGNSEYRDTTR_			0	0	1	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.452085	2632.33442	0.46684	0.0004101	-1.2047	-0.0010583	-0.73785	-0.00064817	878.78526545079	16.315	0.097545	16.315	16.271	16.369	0	495	28	0.993446994398923	0.0181567430371361	0.993446994398923	599.97394873928	0	10.9654293360927						223	12	4	NaN	NaN	NaN	0.044493	1	37370	11.766	10.515	1	48183			13647	1205	11490	11779	13647	13647		
LVPLLDTGDIIIDGGNSEYRDTTR	24	Unmodified	_LVPLLDTGDIIIDGGNSEYRDTTR_			0	0	1	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.452085	2632.33442	1.11	0.00097509	-0.66654	-0.00058552	0.44347	0.00038957	878.785937075481	16.324	0.10639	16.324	16.271	16.377	0	450	91	1.02367897599655	0.0603263976463984	1.02367897599655	618.231993447636	0	36.4330126426016						804	13	4	NaN	NaN	NaN	0.011671	1	37371	22.906	20.72	1	150610			13648	1205	11490	11779	13648	13648		
LVPLLLEDGGEAPAALEAALEEK	23	Unmodified	_LVPLLLEDGGEAPAALEAALEEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.424696	2347.25226	1.197	0.00093774	0.24662	0.00019321	1.4436	0.001131	783.759297073315	19.871	0.053198	19.871	19.853	19.907	0	381	37	1.06991323971056	0.0240906221251305	1.06991323971056	646.566372714146	0	14.5583637866622						177	7	5	NaN	NaN	NaN	0.00042839	1	36025	74.62	73.369	1	63587			13649	1737	11491	11780	13649	13649		
LVPLNQESVEER	12	Unmodified	_LVPLNQESVEER_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.87263	1411.73071	2.0407	0.0014425	1.3146	0.00092927	3.3553	0.0023718	706.873214286118	7.4649	0.23938	7.4649	7.3762	7.6156	0	483	64	1.00151498427745	0.0423306339100051	1.00151498427745	405.059221279919	0	17.1204763553711						972	28	4	NaN	NaN	NaN	0.0067435	1	15818	51.531	42.017	1	436340			13650	2239	11492	11781	13650	13650		
LVPNMTPEVVGEQVTSYLTK	20	Unmodified	_LVPNMTPEVVGEQVTSYLTK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1103.07721	2204.13987	0.22885	0.00025244	-1.4836	-0.0016366	-1.2548	-0.0013841	1103.57688153865	18.133	0.20394	18.133	18.027	18.231	0	96	61	1.2593374219024	0.0396138832384849	1.2593374219024	507.554203926596	0	15.9656916580603						844	24	4	NaN	NaN	NaN	0.049795	1	34727	23.107	18.949	1	155060			13651	2577	11493	11782	13651	13651		
LVPVHYDETEAEREK	15	Unmodified	_LVPVHYDETEAEREK_			0	0	1	Q8NEJ9	Q8NEJ9	Q8NEJ9	NGDN	Neuroguidin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.635491	1813.88464	0.94553	0.00057265	0.91101	0.00055174	1.8565	0.0011244	605.63599607515	4.9465	0.044336	4.9465	4.9199	4.9642	0	636	19	0.898312834727904	0.0121843709142423	0.898312834727904	543.803130509378	0	7.37593719058827						67	6	3	NaN	NaN	NaN	0.059427	1	27572	37.504	26.532	1	12987			13652	2311	11494	11783	13652	13652		
LVQAAQMLQSDPYSVPAR	18	Unmodified	_LVQAAQMLQSDPYSVPAR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.5093	1973.00405	2.002	0.001977	-1.0743	-0.0010609	0.9277	0.00091612	987.508035481346	12.378	0.2483	12.378	12.29	12.538	0	201	70	1.18983705239708	0.0457845927364511	1.18983705239708	479.894989120742	0	18.4662232436717						1274	29	5	NaN	NaN	NaN	3.3781E-10	1	31173	74.733	62.562	1	384190			13653	753	11495	11784	13653	13653		
LVQAEYWHDPIK	12	Unmodified	_LVQAEYWHDPIK_			0	0	0	P50897	P50897	P50897	PPT1	Palmitoyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.261148	1497.76161	-2.0502	-0.0010256	0.19119	9.5643E-05	-1.859	-0.00093	500.261401560322	9.4608	0.1596	9.4608	9.4076	9.5672	0	786	46	0.796423123669906	0.0306754124372791	0.796423123669906	482.893508389053	0	18.5993564135368						541	19	4	NaN	NaN	NaN	0.0047281	1	18469	36.514	34.213	1	223240			13654	1172	11496	11785	13654	13654		
LVQAEYWHDPIK	12	Unmodified	_LVQAEYWHDPIK_			0	0	0	P50897	P50897	P50897	PPT1	Palmitoyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.888084	1497.76161	1.283	0.00096209	2.0198	0.0015146	3.3028	0.0024767	749.889533645065	9.4608	0.1596	9.4608	9.3987	9.5583	0	375	40	1.07392668217569	0.0260855828537037	1.07392668217569	434.103757367312	0	10.5443413576128						483	19	4	NaN	NaN	NaN	8.8695E-06	1	18473	112.7	97.728	1	171860			13655	1172	11496	11785	13655	13655		
LVQAFQFTDK	10	Unmodified	_LVQAFQFTDK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.819138	1195.62372	1.3814	0.00082721	1.2424	0.00074399	2.6238	0.0015712	598.819943758494	10.587	0.63844	10.587	10.507	11.146	0	582	91	0.934820374997243	0.0607364510598223	0.934820374997243	378.747029631913	0	24.6076690715685						1744	73	5	NaN	NaN	NaN	3.5858E-07	1	9317	139.02	118.79	1	1639300			13656	1564	11497	11786	13656	13656		
LVQAFQYTDEHGEVCPAGWK	20	Unmodified	_LVQAFQYTDEHGEVCPAGWK_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1168.04423	2334.07392	1.1334	0.0013238	0.85716	0.0010012	1.9905	0.002325	1168.54676732547	11.243	0.053197	11.243	11.216	11.27	0	63	37	1.28111162701928	0.0237390486204621	1.28111162701928	516.149837543069	0	9.56427670349603						204	7	4	NaN	NaN	NaN	0.0014425	1	35928	37.886	35.915	1	40646			13657	936	11498	11787	13657	13657		
LVQAFQYTDEHGEVCPAGWK	20	Unmodified	_LVQAFQYTDEHGEVCPAGWK_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.031915	2334.07392	1.8282	0.0014242	0.99931	0.00077849	2.8275	0.0022027	779.367232606959	11.243	0.30156	11.243	11.19	11.491	0	492	169	0.995464410099171	0.113233838075646	0.995464410099171	601.595680955057	0	68.4313645301356						3292	35	7	NaN	NaN	NaN	2.1593E-22	1	35929	155.28	146.12	1	2411500			13658	936	11498	11787	13658	13658		
LVQAPLDADGDNVLQEK	17	Unmodified	_LVQAPLDADGDNVLQEK_			0	0	0	Q02241	Q02241	Q02241	KIF23	Kinesin-like protein KIF23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.97053	1823.92651	1.6163	0.0014756	0.57333	0.00052344	2.1896	0.001999	912.971218903111	11.181	0.079816	11.181	11.146	11.225	0	207	31	1.18585551256002	0.0199104355287145	1.18585551256002	478.562101399579	0	8.03502599219075						161	10	3	NaN	NaN	NaN	0.00020589	1	27833	59.77	50.509	1	33820			13659	1527	11499	11788	13659	13659		
LVQDVANNTNEEAGDGTTTATVLAR	25	Unmodified	_LVQDVANNTNEEAGDGTTTATVLAR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1280.6279	2559.24125	1.4081	0.0018032	-0.20437	-0.00026173	1.2037	0.0015415	1281.12906949103	9.4164	0.2128	9.4164	9.3721	9.5849	0	60	82	1.28308947459206	0.0534531335851651	1.28308947459206	516.677372351848	0	21.5246287586734						1517	25	6	NaN	NaN	NaN	7.9357E-25	1	37059	127.89	125.15	1	683500			13660	635	11500	11789	13660	13660		
LVQDVANNTNEEAGDGTTTATVLAR	25	Unmodified	_LVQDVANNTNEEAGDGTTTATVLAR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.087694	2559.24125	2.3032	0.0019671	1.9411	0.0016579	4.2443	0.003625	854.423912065497	9.4164	0.37239	9.4164	9.3455	9.7179	0	303	277	1.12200181823275	0.184875016934143	1.12200181823275	677.713896606249	0	111.668596320932						3180	43	7	NaN	NaN	NaN	1.3893E-24	1	37060	285.32	275.45	1	2288000			13661	635	11500	11789	13661	13661		
LVQDYGLESEVAQHLAATYGDK	22	Unmodified	_LVQDYGLESEVAQHLAATYGDK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.06405	2406.17032	1.0084	0.00080977	0.33484	0.0002689	1.3432	0.0010787	803.398687863897	14.932	0.070948	14.932	14.897	14.967	0	477	127	1.0055473068722	0.0845970948666849	1.0055473068722	607.581440285083	0	51.1160682264815						558	9	4	NaN	NaN	NaN	1.1905E-06	1	36375	70.337	70.284	1	91303			13662	1064	11501	11790	13662	13662		
LVQGSILK	8	Unmodified	_LVQGSILK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.276378	856.538203	-1.2553	-0.00053885	-0.8474	-0.00036377	-2.1027	-0.00090262	429.276107506004	6.1525	0.13299	6.1525	6.1081	6.2411	0	789	43	0.794378096728713	0.0286323764713153	0.794378096728713	323.295546227439	0	11.6527882996814						304	16	3	NaN	NaN	NaN	0.036908	1	1660	34.931	7.2267	1	136550			13663	662	11502	11791	13663	13663		
LVQIEYALAAVAGGAPSVGIK	21	Unmodified	_LVQIEYALAAVAGGAPSVGIK_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.389369	2026.14628	0.81038	0.00054813	-0.49902	-0.00033753	0.31136	0.0002106	676.723360437948	18.958	0.10639	18.958	18.922	19.029	0	477	46	1.0055473068722	0.0302361592844221	1.0055473068722	608.23503696211	0	18.289235458407						485	13	5	NaN	NaN	NaN	0.024289	1	32086	54.261	32.222	1	177270			13664	842	11503	11792	13664	13664		
LVQIEYALAAVAGGAPSVGIK	21	Unmodified	_LVQIEYALAAVAGGAPSVGIK_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.08041	2026.14628	0.97498	0.00098871	0.31474	0.00031917	1.2897	0.0013079	1014.58252360633	18.958	0.1064	18.958	18.914	19.02	0	147	40	1.22562176648663	0.0258179317193954	1.22562176648663	494.237391587456	0	10.4111950179829						341	13	5	NaN	NaN	NaN	4.42E-08	1	32087	77.478	66	1	101820			13665	842	11503	11792	13665	13665		
LVQLGQAEK	9	Unmodified	_LVQLGQAEK_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.287474	984.560395	0.71171	0.00035108	0.011426	5.6363E-06	0.72314	0.00035671	493.287432943198	4.9199	0.07979	4.9199	4.8933	4.9731	0	702	28	0.853568545818287	0.0183337258580997	0.853568545818287	346.671923775135	0	7.44613662760997						123	10	2	NaN	NaN	NaN	0.012689	1	3944	45.489	27.086	1	48400			13666	313	11504	11793	13666	13666		
LVQQGLLTPDMLK	13	Unmodified	_LVQQGLLTPDMLK_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.41562	1454.81669	1.3462	0.00098058	-0.94491	-0.00068829	0.40128	0.0002923	728.415167444926	13.646	0.13298	13.646	13.575	13.708	0	420	34	1.04379886199097	0.0221150800336967	1.04379886199097	422.039482591012	0	8.94179642721332						366	16	4	NaN	NaN	NaN	1.3792E-07	1	17106	141.44	115.83	1	102360			13667	2223	11505	11794	13667	13667		
LVQSPNSYFMDVK	13	Unmodified	_LVQSPNSYFMDVK_			0	0	0	P42677;Q71UM5	P42677;Q71UM5	P42677	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.379234	1526.74392	1.9183	0.0014663	1.0894	0.00083274	3.0077	0.002299	764.381371245165	11.651	0.46115	11.651	11.527	11.988	0	387	103	1.06589869032374	0.0683416384885636	1.06589869032374	430.783785336631	0	27.6203263888703						2356	53	5	NaN	NaN	NaN	1.3873E-05	1	19319	101.45	80.357	1	2676100			13668	1052;2105	11506	11795	13668	13668		
LVQSPNSYFMDVK	13	Oxidation (M)	_LVQSPNSYFM(Oxidation (M))DVK_	LVQSPNSYFM(1)DVK	LVQSPNSYFM(68)DVK	0	1	0	P42677;Q71UM5	P42677;Q71UM5	P42677	RPS27;RPS27L	40S ribosomal protein S27;40S ribosomal protein S27-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.376691	1542.73883	2.331	0.0018004	2.0707	0.0015994	4.4017	0.0033998	772.378488573102	10.152	0.26601	10.152	10.028	10.294	0	390	25	1.06389100039157	0.016055984619652	1.06389100039157	429.932313698909	0	6.48843407238189						676	31	5	NaN	NaN	NaN	0.0012973	1	19810	67.548	49.041	1	332720			13669	1052;2105	11506	11796	13669	13669	374	
LVQSTLSDLR	10	Unmodified	_LVQSTLSDLR_			0	0	0	Q9BYN0	Q9BYN0	Q9BYN0	SRXN1	Sulfiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.322045	1130.62954	1.6465	0.00093245	-1.3834	-0.00078346	0.2631	0.000149	566.822598346834	8.0237	0.12429	8.0237	7.9704	8.0947	0	579	46	0.936845902828289	0.0303871346419722	0.936845902828289	379.816520381205	0	12.3195668671077						366	15	4	NaN	NaN	NaN	0.01032	1	7557	44.82	23.546	1	97698			13670	2803	11507	11797	13670	13670		
LVQTAAQQVAEDK	13	Unmodified	_LVQTAAQQVAEDK_			0	0	0	Q53FT3	Q53FT3	Q53FT3	C11orf73	Protein Hikeshi	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.87263	1399.73071	1.5778	0.0011058	-1.1219	-0.0007863	0.45589	0.00031952	700.871915664575	5.2745	0.15961	5.2745	5.2391	5.3987	0	483	34	1.00151498427745	0.0221793099010968	1.00151498427745	405.092917404361	0	8.97109029310514						303	19	3	NaN	NaN	NaN	0.00014809	1	15449	83.214	66.926	1	104090			13671	1948	11508	11798	13671	13671		
LVQTTYECLMQAIDAVK	17	Unmodified	_LVQTTYECLMQAIDAVK_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.999919	1981.98528	-0.15243	-0.00015121	1.7796	0.0017654	1.6272	0.0016141	992.002826237254	18.71	0.044334	18.71	18.683	18.727	0	78	28	1.27121832677567	0.0178176976622118	1.27121832677567	512.702121891058	0	7.18615457802588						82	6	3	NaN	NaN	NaN	0.00020589	1	31320	66.485	62.179	1	12971			13672	1236	11509	11799	13672	13672		
LVSDEMVVELIEK	13	Unmodified	_LVSDEMVVELIEK_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.402375	1502.7902	0.55273	0.00041588	-0.40616	-0.0003056	0.14657	0.00011028	752.402564645264	16.865	0.31039	16.865	16.741	17.051	0	426	52	1.03977710643793	0.0341872929561484	1.03977710643793	420.286913115496	0	13.818799947941						958	36	4	NaN	NaN	NaN	2.5637E-05	1	18607	110.44	102.79	1	531030			13673	1257	11510	11800	13673	13673		
LVSDEMVVELIEK	13	Oxidation (M)	_LVSDEM(Oxidation (M))VVELIEK_	LVSDEM(1)VVELIEK	LVSDEM(72)VVELIEK	0	1	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.399832	1518.78511	1.6807	0.001278	-0.80485	-0.00061201	0.87581	0.00066596	760.400028175414	14.471	0.10641	14.471	14.427	14.533	0	405	40	1.05384839605172	0.0261251880875029	1.05384839605172	425.933710662586	0	10.5590124211016						274	13	4	NaN	NaN	NaN	0.0014664	1	19100	71.896	57.533	1	56510			13674	1257	11510	11801	13674	13674	443	
LVSDGQALPEMEIHLQTNAEK	21	Unmodified	_LVSDGQALPEMEIHLQTNAEK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1162.08356	2322.15256	0.19719	0.00022915	0.45825	0.00053253	0.65544	0.00076168	1162.58541020871	12.21	0.070943	12.21	12.192	12.263	0	66	31	1.27913350869533	0.0197879567464534	1.27913350869533	515.36853161512	0	7.97265503777231						86	9	2	NaN	NaN	NaN	0.0088524	1	35834	38.616	33.286	1	9734.1			13675	1608	11511	11802	13675	13675		
LVSDGQALPEMEIHLQTNAEK	21	Unmodified	_LVSDGQALPEMEIHLQTNAEK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.05813	2322.15256	1.3795	0.0010692	-0.30911	-0.00023957	1.0704	0.00082959	775.392041969302	12.227	0.17737	12.227	12.174	12.352	0	459	112	1.01763759082241	0.0746548228279706	1.01763759082241	615.014425956538	0	45.1180198338842						1238	21	5	NaN	NaN	NaN	2.78E-11	1	35835	179.9	174.28	1	345180			13676	1608	11511	11802	13676	13676		
LVSDIIDPVALEIPLSK	17	Unmodified	_LVSDIIDPVALEIPLSK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.532235	1821.04992	0.72978	0.00066522	0.86473	0.00078823	1.5945	0.0014534	911.533209342437	19.055	0.062052	19.055	19.029	19.091	0	255	43	1.15396378101328	0.027935963941738	1.15396378101328	465.697471711228	0	11.2739307693521						263	8	4	NaN	NaN	NaN	9.9955E-09	1	27757	86.729	83.441	1	76165			13677	2005	11512	11803	13677	13677		
LVSEFPYIEAEVK	13	Unmodified	_LVSEFPYIEAEVK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.403232	1522.79191	1.7399	0.0013265	-2.7829	-0.0021217	-1.043	-0.00079516	762.400616857175	14.391	0.19505	14.391	14.302	14.498	0	411	58	1.04982941439551	0.0381671761516003	1.04982941439551	424.299283742447	0	15.425654188705						514	23	3	NaN	NaN	NaN	0.0038147	1	19206	67.548	51.669	1	154710			13678	1064	11513	11804	13678	13678		
LVSESSDVLPK	11	Unmodified	_LVSESSDVLPK_			0	0	0	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.321711	1172.62887	1.7992	0.0010567	0.89184	0.0005238	2.691	0.0015805	587.322226794962	7.066	0.42569	7.066	6.8707	7.2964	0	561	85	0.948993180460448	0.0567109047160032	0.948993180460448	384.575218329694	0	22.9818390815511						2327	49	5	NaN	NaN	NaN	4.8241E-05	1	8677	99.855	91.092	1	2307900		+	13679	28	11514	11805	13679	13679		
LVSEYMSK	8	Unmodified	_LVSEYMSK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.741511	955.468469	0.1514	7.2484E-05	-2.6225	-0.0012555	-2.471	-0.001183	478.741299776288	5.1681	0.133	5.1681	5.1327	5.2657	0	735	40	0.831145085810763	0.0265262507146683	0.831145085810763	337.706342128581	0	10.778001641552						214	16	2	NaN	NaN	NaN	0.029851	1	3340	31.952	21.873	1	73560			13680	658	11515	11806	13680	13680		
LVSFHDDSDEDLLHI	15	Unmodified	_LVSFHDDSDEDLLHI_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.612575	1753.81589	-0.31556	-0.0001848	-1.2541	-0.00073442	-1.5697	-0.00091922	585.61197333441	14.427	0.088659	14.427	14.391	14.48	1.7764E-15	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	524.248158491761	0	9.85900222557746						194	11	4	NaN	NaN	NaN	0.0022408	1	25997	54.584	43.796	1	50093			13681	657	11516	11807	13681	13681		
LVSGMQHPGSAGGVYETTQHFIDIK	25	Unmodified	_LVSGMQHPGSAGGVYETTQHFIDIK_			0	0	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	668.833885	2671.30644	0.9088	0.00060784	1.0835	0.00072469	1.9923	0.0013325	669.085189033947	11.793	0.23059	11.793	11.731	11.961	0	525	49	0.973257487423603	0.0323166232596742	0.973257487423603	783.64622308197	0	26.0206575212138						772	27	6	NaN	NaN	NaN	3.8401E-05	1	37520	49.872	40.365	1	408940			13682	1125	11517	11808	13682	13682		
LVSGMQHPGSAGGVYETTQHFIDIK	25	Unmodified	_LVSGMQHPGSAGGVYETTQHFIDIK_			0	0	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	891.442755	2671.30644	2.0203	0.001801	0.28925	0.00025785	2.3096	0.0020589	891.777480836231	11.802	0.15075	11.802	11.749	11.899	0	273	61	1.14198628764525	0.0399689530119671	1.14198628764525	689.628646161683	0	24.1366601791503						434	18	3	NaN	NaN	NaN	0.0085934	1	37521	37.997	29.182	1	206650			13683	1125	11517	11808	13683	13683		
LVSGYDSYGNICGQK	15	Unmodified	_LVSGYDSYGNICGQK_			0	0	0	Q8WWI5	Q8WWI5	Q8WWI5	SLC44A1	Choline transporter-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.885412	1659.75627	2.7292	0.0022676	0.023192	1.927E-05	2.7524	0.0022869	830.885986373163	7.9438	0.18626	7.9438	7.8374	8.0237	0	372	37	1.07593298845566	0.0240773390598485	1.07593298845566	434.525890348679	0	9.72386505894258						365	22	4	NaN	NaN	NaN	0.00011678	1	23322	78.043	76.99	1	78640			13684	2390	11518	11809	13684	13684		
LVSIGAEEIVDGNAK	15	Unmodified	_LVSIGAEEIVDGNAK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.90667	1513.79879	2.2922	0.0017373	-0.3493	-0.00026474	1.9429	0.0014725	757.906260577859	11.137	0.15962	11.137	11.101	11.261	0	339	58	1.09798411722691	0.0380830760737314	1.09798411722691	443.78523662932	0	15.3924876159758						376	19	4	NaN	NaN	NaN	0.00017761	1	18933	95.138	85.624	1	90160			13685	221	11519	11810	13685	13685		
LVSIGAEEIVDGNAK	15	Unmodified	_LVSIGAEEIVDGNAK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.90667	1513.79879	2.0405	0.0015465	1.1607	0.00087968	3.2011	0.0024262	758.409280969837	11.137	0.17734	11.137	11.092	11.27	0	411	52	1.04982941439551	0.0341731416799977	1.04982941439551	424.321974603805	0	13.8121629640388						673	21	5	NaN	NaN	NaN	3.9835E-06	1	18936	117.21	103.41	1	283350			13686	221	11519	11810	13686	13686		
LVSIVDSLHLEMEEALTEQVAR	22	Unmodified	_LVSIVDSLHLEMEEALTEQVAR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.100106	2481.27849	0.41199	0.00034117	0.63726	0.00052771	1.0492	0.00086888	828.434484054031	19.587	0.070937	19.587	19.57	19.641	0	510	19	0.983355730988811	0.0121137032584996	0.983355730988811	594.069385519569	0	7.3181861094223						104	9	4	NaN	NaN	NaN	0.0026867	1	36736	23.779	23.779	1	18495			13687	2698	11520	11811	13687	13687		
LVSLASEVQDLHLAQR	16	Unmodified	_LVSLASEVQDLHLAQR_			0	0	0	Q96N66	Q96N66	Q96N66	MBOAT7	Lysophospholipid acyltransferase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.663492	1777.96865	-0.031865	-1.8917E-05	-1.1362	-0.0006745	-1.168	-0.00069342	593.663028903878	13.824	0.06206	13.824	13.788	13.85	0	669	31	0.875957769340875	0.0203354810451108	0.875957769340875	530.351444619465	0	12.3121823069412						151	8	3	NaN	NaN	NaN	0.00012133	1	26633	55.578	51.596	1	31924			13688	2589	11521	11812	13688	13688		
LVSLGTCFGK	10	Unmodified	_LVSLGTCFGK_			0	0	0	Q9Y221	Q9Y221	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.289159	1080.56377	0.55213	0.00029886	-3.8867	-0.0021038	-3.3346	-0.001805	541.287388179481	9.9307	0.18619	9.9307	9.8864	10.073	0	651	37	0.888155670855968	0.0243856529681402	0.888155670855968	360.277417818575	0	9.89195967719741						392	22	4	NaN	NaN	NaN	0.0099078	1	6225	39.01	25.362	1	107280			13689	3323	11522	11813	13689	13689		
LVSLIGSK	8	Unmodified	_LVSLIGSK_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.763104	815.511654	-1.4677	-0.00059995	-1.4322	-0.00058543	-2.8999	-0.0011854	408.762269420195	7.7842	0.1153	7.7842	7.7487	7.864	0	819	22	0.773912161060781	0.0143371313465699	0.773912161060781	315.215955009733	0	5.8395419750409						130	14	2	NaN	NaN	NaN	0.051106	1	1164	31.952	14.557	1	26423			13690	841	11523	11814	13690	13690		
LVSNHSLHETSSVFVDSLTK	20	Unmodified	_LVSNHSLHETSSVFVDSLTK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1100.56586	2199.11716	0.57275	0.00063035	1.5341	0.0016883	2.1068	0.0023187	1101.07035201955	10.09	0.035456	10.09	10.073	10.108	0	81	7	1.2692388538616	0.00395867479881917	1.2692388538616	511.552113432071	0	1.59549832056041						16	5	2	NaN	NaN	NaN	0.00421	1	34668	30.172	28.071	1	2564.6			13691	792	11524	11815	13691	13691		
LVSNHSLHETSSVFVDSLTK	20	Unmodified	_LVSNHSLHETSSVFVDSLTK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.04633	2199.11716	1.1333	0.0008319	1.0056	0.00073815	2.1389	0.0015701	734.381533324215	10.09	0.070927	10.09	10.064	10.135	0	537	31	0.965173861991602	0.0202146590130609	0.965173861991602	583.501651427457	0	12.2208934386441						176	9	4	NaN	NaN	NaN	0.019801	1	34669	12.183	10.335	1	36785			13692	792	11524	11815	13692	13692		
LVSPGSANETSSILVESVTR	20	Unmodified	_LVSPGSANETSSILVESVTR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.53931	2045.06406	1.8627	0.0019065	-1.0354	-0.0010598	0.82725	0.00084672	1024.03987726283	13.451	0.16849	13.451	13.38	13.549	0	177	88	1.2057522832638	0.0576650550215505	1.2057522832638	486.194329194473	0	23.252224468756						1040	20	4	NaN	NaN	NaN	8.8275E-16	1	32450	149.57	142.59	1	414900			13693	326	11525	11816	13693	13693		
LVSQDNFGFDLPAVEAATK	19	Unmodified	_LVSQDNFGFDLPAVEAATK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.51256	2021.01057	1.4036	0.0014198	-0.83438	-0.00084399	0.56927	0.00057582	1012.01348648197	16.537	0.26601	16.537	16.395	16.661	0	192	58	1.1958073123591	0.0377909043903639	1.1958073123591	482.222923984673	0	15.2396127927958						1134	31	4	NaN	NaN	NaN	5.2287E-05	1	32006	51.128	42.761	1	290660			13694	1511	11526	11817	13694	13694		
LVSQEEMEFIQR	12	Unmodified	_LVSQEEMEFIQR_			0	0	0	P82909	P82909	P82909	MRPS36	28S ribosomal protein S36, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.874316	1507.73408	2.071	0.0015633	3.6931	0.0027878	5.7641	0.0043512	755.37741392549	10.915	0.32812	10.915	10.835	11.163	0	426	43	1.03977710643793	0.0281600678501546	1.03977710643793	420.274320882956	0	11.382202318616						346	38	3	NaN	NaN	NaN	0.0014504	1	18727	64.906	59.755	1	119890			13695	1474	11527	11818	13695	13695		
LVSSDPEINTK	11	Unmodified	_LVSSDPEINTK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.816793	1201.61903	1.9143	0.0011521	0.49655	0.00029883	2.4108	0.0014509	601.817418126851	4.8135	0.23941	4.8135	4.7514	4.9908	0	603	64	0.920633820089869	0.0425891846229369	0.920633820089869	372.97804822451	0	17.2542335611631						616	28	4	NaN	NaN	NaN	1.6519E-05	1	9512	142.56	123.08	1	677730			13696	3332	11528	11819	13696	13696		
LVSSPCCIVTSTYGWTANMER	21	Unmodified	_LVSSPCCIVTSTYGWTANMER_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1216.55579	2431.09704	0.91233	0.0011099	-0.89932	-0.0010941	0.013009	1.5826E-05	1217.05649824337	15.642	0.22168	15.642	15.491	15.712	0	66	55	1.27913350869533	0.0356232085192938	1.27913350869533	515.231104827473	0	14.3489205451398						1099	26	5	NaN	NaN	NaN	1.6729E-06	1	36488	71.935	71.5	1	227170			13697	579	11529	11820	13697	13697		
LVSVLQNK	8	Unmodified	_LVSVLQNK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.779285	899.544017	-0.43545	-0.00019629	-5.2911	-0.0023851	-5.7265	-0.0025814	450.778971695973	6.117	0.2217	6.117	6.0283	6.25	0	774	31	0.804600385996946	0.0204374693945948	0.804600385996946	327.208955985574	0	8.31135945243989						334	26	3	NaN	NaN	NaN	0.017139	1	2324	56.091	38.396	1	161270			13698	1136	11530	11821	13698	13698		
LVSWYTLMEGQEPIAR	16	Unmodified	_LVSWYTLMEGQEPIAR_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.982386	1891.95022	1.221	0.0011562	-0.18353	-0.0001738	1.0374	0.00098241	947.48331257832	17.415	0.097536	17.415	17.362	17.459	0	252	61	1.15595906938629	0.0399030432867902	1.15595906938629	466.370539708788	0	16.0988432259661						360	12	3	NaN	NaN	NaN	9.4632E-05	1	29415	89.382	78.411	1	79743			13699	3409	11531	11822	13699	13699		
LVTANTIDQK	10	Unmodified	_LVTANTIDQK_			0	0	0	Q9NRZ9	Q9NRZ9	Q9NRZ9	HELLS	Lymphoid-specific helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.808771	1101.60299	1.2618	0.00069625	6.0212	0.0033225	7.2829	0.0040188	551.812112633939	4.5741	0.15961	4.5741	4.5475	4.7071	0	621	31	0.908462957275599	0.0202903977808542	0.908462957275599	368.426342546106	0	8.22875273376491						193	19	3	NaN	NaN	NaN	0.062818	1	6771	22.004	9.937	1	41620			13700	3032	11532	11823	13700	13700		
LVTDCVAAMNPDAVLR	16	Unmodified	_LVTDCVAAMNPDAVLR_			0	0	0	O95861	O95861	O95861	BPNT1	3(2),5-bisphosphate nucleotidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.939664	1743.86478	2.1203	0.0018509	2.3881	0.0020847	4.5084	0.0039355	873.44392280966	14.01	0.24829	14.01	13.895	14.143	0	309	64	1.11800162319566	0.042016526855482	1.11800162319566	451.335365772727	0	16.9620008802972						891	29	5	NaN	NaN	NaN	3.2064E-06	1	25714	53.051	43.789	1	252380			13701	459	11533	11824	13701	13701		
LVTDQNISENWR	12	Unmodified	_LVTDQNISENWR_			0	0	0	P24666	P24666	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.867879	1473.72121	1.6835	0.0012422	-0.39338	-0.00029026	1.2901	0.0009519	737.867678317648	9.1858	0.27495	9.1858	9.0794	9.3544	0	474	85	1.00756305028564	0.0564213754491176	1.00756305028564	407.339012782887	0	22.8101133410765						884	32	4	NaN	NaN	NaN	1.3851E-11	1	17701	172.1	152.54	1	389130			13702	831	11534	11825	13702	13702		
LVTLEEFLASTQR	13	Unmodified	_LVTLEEFLASTQR_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.943596	1505.80896	-1.9002	-0.00095567	0.93116	0.00046832	-0.969	-0.00048735	502.943950672664	17.885	0.06205	17.885	17.858	17.92	0	720	19	0.841341816837976	0.012233526764468	0.841341816837976	510.10403086586	0	7.41716528213681						88	8	3	NaN	NaN	NaN	0.011226	1	18684	68.49	64.883	1	17453			13703	1532	11535	11826	13703	13703		
LVTLEEFLASTQR	13	Unmodified	_LVTLEEFLASTQR_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.911756	1505.80896	0.94568	0.00071296	2.6776	0.0020187	3.6233	0.0027316	753.913673189649	17.894	0.062059	17.894	17.867	17.929	0	345	25	1.09397730668811	0.0160316600123953	1.09397730668811	442.187001239901	0	6.48001711044617						93	8	3	NaN	NaN	NaN	0.00026693	1	18686	51.531	38.257	1	14677			13704	1532	11535	11826	13704	13704		
LVTLEEFLK	9	Unmodified	_LVTLEEFLK_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.320983	1090.62741	-0.67957	-0.00037126	-1.1346	-0.00061986	-1.8142	-0.00099112	546.320317974604	16.298	0.16845	16.298	16.245	16.413	0	648	40	0.890187667287968	0.0264159589549013	0.890187667287968	361.059729660491	0	10.714301432682						346	20	3	NaN	NaN	NaN	0.018987	1	6485	58.426	32.203	1	138120			13705	1467	11536	11827	13705	13705		
LVTLISQQATLLASNEAFK	19	Unmodified	_LVTLISQQATLLASNEAFK_			0	0	0	P51572	P51572	P51572	BCAP31	B-cell receptor-associated protein 31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.07533	2046.13611	0.13059	0.00013373	0.55006	0.00056331	0.68065	0.00069704	1024.57739064887	16.91	0.15076	16.91	16.856	17.007	0	126	49	1.23951419873743	0.031743256663868	1.23951419873743	499.806342584868	0	12.7997573816106						424	18	4	NaN	NaN	NaN	2.0567E-07	1	32470	80.379	79.812	1	114810			13706	1191	11537	11828	13706	13706		
LVTLPVSFAQLK	12	Unmodified	_LVTLPVSFAQLK_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.402838	1314.79112	1.0369	0.00068267	0.0034793	2.2908E-06	1.0403	0.00068496	658.402982796498	16.165	0.17734	16.165	16.111	16.289	0	528	139	0.971237000454584	0.0927692926863629	0.971237000454584	393.094238625061	0	37.5470399699177						1723	21	5	NaN	NaN	NaN	2.74E-05	1	12813	117.3	85.159	1	1295700			13707	2474	11538	11829	13707	13707		
LVTQDTENELK	11	Unmodified	_LVTQDTENELK_			0	0	0	P42229;P51692	P42229;P51692	P42229	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.332807	1288.65106	1.533	0.0009893	-0.93165	-0.00060122	0.60136	0.00038807	645.331963303584	5.443	0.19506	5.443	5.381	5.576	0	516	40	0.979317271586824	0.0262590697317363	0.979317271586824	396.448217823445	0	10.6302234208329						418	23	4	NaN	NaN	NaN	0.0004332	1	12019	101.82	87.823	1	111060			13708	1046;1197	11539	11830	13708	13708		
LVTSIGDVVNHDPVVGDR	18	Unmodified	_LVTSIGDVVNHDPVVGDR_			0	0	0	P11216	P11216	P11216	PYGB	Glycogen phosphorylase, brain form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.333923	1890.97994	-0.035525	-2.2428E-05	-0.61153	-0.00038608	-0.64706	-0.00040851	631.333329938617	11.358	0.097591	11.358	11.314	11.412	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	515.324215584886	0	12.3287273710617						230	12	3	NaN	NaN	NaN	0.010031	1	29396	49.487	42.74	1	56536			13709	646	11540	11831	13709	13709		
LVTSPCCIVTSTYGWTANMER	21	Unmodified	_LVTSPCCIVTSTYGWTANMER_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1223.56362	2445.11269	0.92905	0.0011367	-0.31844	-0.00038963	0.61061	0.00074712	1224.06505080269	16.067	0.22168	16.067	15.961	16.182	0	69	49	1.27715511956461	0.0316650717164555	1.27715511956461	514.41744540888	0	12.7541792312753						1005	26	5	NaN	NaN	NaN	1.6031E-05	1	36552	46.823	45.728	1	230680			13710	567	11541	11832	13710	13710		
LVVADREEVEQEADNILK	18	Unmodified	_LVVADREEVEQEADNILK_			0	0	1	Q9H2P9	Q9H2P9	Q9H2P9	DPH5	Diphthine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.695298	2069.06406	0.72568	0.00050122	0.3449	0.00023822	1.0706	0.00073944	691.364217309535	13.212	0.12416	13.212	13.141	13.265	0	501	37	0.98941132619024	0.0242240595168645	0.98941132619024	598.390303064801	0	14.6505724485401						319	15	4	NaN	NaN	NaN	0.030773	1	32870	37.146	27.99	1	98216			13711	2872	11542	11833	13711	13711		
LVVADTR	7	Unmodified	_LVVADTR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	387.229428	772.444303	-0.83499	-0.00032333	1.9378	0.00075037	1.1028	0.00042704	387.230160812205	3.5898	0.16845	3.5898	3.5455	3.714	-4.4409E-16	816	34	0.775960037304758	0.0225266419611888	0.775960037304758	316.341050684713	0	9.18359354065814						184	20	3	NaN	NaN	NaN	0.026367	1	781	56.091	20.458	1	47601			13712	804	11543	11834	13712	13712		
LVVDLTDIDPDVAYSSVPYEK	21	Unmodified	_LVVDLTDIDPDVAYSSVPYEK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1169.58866	2337.16277	1.0871	0.0012715	-0.2251	-0.00026327	0.86202	0.0010082	1170.09001936451	17.504	0.17732	17.504	17.433	17.61	0	87	76	1.26527909472281	0.0495004147022173	1.26527909472281	509.767049350184	0	19.9431733675231						1175	21	5	NaN	NaN	NaN	1.9985E-05	1	35950	40.53	37.089	1	370640			13713	614	11544	11835	13713	13713		
LVVEEYYEVLDHCSSILNK	19	Unmodified	_LVVEEYYEVLDHCSSILNK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.715593	2309.12495	0.3617	0.00027877	-0.48166	-0.00037122	-0.11996	-9.2453E-05	771.049506309641	15.872	0.10641	15.872	15.828	15.934	0	558	61	0.951016745717027	0.0404405239988286	0.951016745717027	574.771057124616	0	24.4412549349539						505	13	5	NaN	NaN	NaN	3.7649E-05	1	35710	49.487	46.412	1	139110			13714	57	11545	11836	13714	13714		
LVVEWQLQDDK	11	Unmodified	_LVVEWQLQDDK_			0	0	0	P61916	P61916	P61916	NPC2	Epididymal secretory protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.858992	1371.70343	0.55413	0.00038061	2.8358	0.0019478	3.39	0.0023284	687.361749174419	12.032	0.20402	12.032	11.926	12.13	0	492	55	0.995464410099171	0.0362859024304513	0.995464410099171	402.726034860447	0	14.6798594293219						451	24	3	NaN	NaN	NaN	0.00073716	1	14539	44.57	27.918	1	135340			13715	1352	11546	11837	13715	13715		
LVVLATPQVSDSMR	14	Unmodified	_LVVLATPQVSDSMR_			0	0	0	P46976	P46976	P46976	GYG1	Glycogenin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.413608	1514.81266	1.1578	0.00087811	0.7618	0.00057776	1.9196	0.0014559	758.414752987052	11.864	0.17737	11.864	11.775	11.953	0	405	40	1.05384839605172	0.026117980429907	1.05384839605172	425.943792404522	0	10.5563491636379						460	21	3	NaN	NaN	NaN	0.0030417	1	18981	67.548	58.571	1	128680			13716	1096	11547	11838	13716	13716		
LVVLDEELEGISPDELK	17	Unmodified	_LVVLDEELEGISPDELK_			0	0	0	P60983	P60983	P60983	GMFB	Glia maturation factor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.503871	1896.99319	0.80978	0.00076889	0.95289	0.00090477	1.7627	0.0016737	950.00621263677	16.723	0.17734	16.723	16.644	16.821	0	228	55	1.17191150690002	0.0358732713837995	1.17191150690002	472.797380603076	0	14.4727555315067						527	21	4	NaN	NaN	NaN	3.8946E-14	1	29546	94.507	86.132	1	105520			13717	1318	11548	11839	13717	13717		
LVVPATQCGSLIGK	14	Unmodified	_LVVPATQCGSLIGK_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.905419	1441.79629	2.2897	0.0016529	1.2775	0.00092222	3.5671	0.0025751	721.906965270365	10.347	0.26604	10.347	10.285	10.551	0	444	58	1.02770517576159	0.0382409924539848	1.02770517576159	415.567656445857	0	15.4633060035817						1039	31	6	NaN	NaN	NaN	0.00014176	1	16730	110.44	60.324	1	1358400			13718	1833	11549	11840	13718	13718		
LVVVDFSATWCGPCK	15	Unmodified	_LVVVDFSATWCGPCK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.281226	1737.82185	-0.22903	-0.0001329	-0.37078	-0.00021516	-0.59982	-0.00034806	580.281072774311	15.411	0.17747	15.411	15.358	15.535	0	642	25	0.894250814548268	0.0162525902140942	0.894250814548268	541.523693729964	0	9.84193980282998						247	21	3	NaN	NaN	NaN	0.043997	1	25535	36.514	36.254	1	46396			13719	628	11550	11841	13719	13719		
LVVVDFSATWCGPCK	15	Unmodified	_LVVVDFSATWCGPCK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.9182	1737.82185	2.543	0.0022122	-0.38116	-0.00033158	2.1618	0.0018806	869.918162618033	15.402	0.31047	15.402	15.304	15.615	0	345	157	1.09397730668811	0.103991089042358	1.09397730668811	441.648911208582	0	41.9821791276387						2963	36	5	NaN	NaN	NaN	7.7651E-07	1	25537	121.96	114.41	1	806860			13720	628	11550	11841	13720	13720		
LVYAPLSGVGGVLYDK	16	Unmodified	_LVYAPLSGVGGVLYDK_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.958706	1649.90286	2.3231	0.0019188	0.32894	0.00027169	2.652	0.0021905	825.959026638087	15.473	0.14201	15.473	15.429	15.571	0	285	49	1.13399579921816	0.0319795568377919	1.13399579921816	457.997757009114	0	12.9158902633964						509	17	4	NaN	NaN	NaN	9.1399E-07	1	23052	84.102	78.074	1	185120			13721	1768	11551	11842	13721	13721		
LVYVCDPVLGDK	12	Unmodified	_LVYVCDPVLGDK_			0	0	0	O00764	O00764	O00764	PDXK	Pyridoxal kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.35777	1376.70099	1.202	0.00082862	-0.55479	-0.00038245	0.64723	0.00044617	689.35646680484	11.412	0.19514	11.412	11.296	11.491	0	504	67	0.987393073566096	0.0443923757513962	0.987393073566096	399.446231832763	0	17.9587721351505						592	23	5	NaN	NaN	NaN	0.0063709	1	14706	42.061	35.314	1	193880			13722	99	11552	11843	13722	13722		
LWAEDSTEK	9	Unmodified	_LWAEDSTEK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.756204	1077.49785	1.2754	0.0006884	3.9484	0.0021312	5.2238	0.0028196	540.260416814996	4.8933	0.23938	4.8933	4.8489	5.0883	0	675	55	0.871889544407995	0.0365987959627344	0.871889544407995	353.6917504915	0	14.8467111378541						318	28	3	NaN	NaN	NaN	0.033456	1	6139	37.722	27.021	1	79051			13723	131	11553	11844	13723	13723		
LWAHVYAGAPVSSPEYTK	18	Unmodified	_LWAHVYAGAPVSSPEYTK_			0	0	0	P61086	P61086	P61086	UBE2K	Ubiquitin-conjugating enzyme E2 K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.499258	1974.98396	2.2888	0.0022625	-0.11029	-0.00010903	2.1785	0.0021534	988.499494795887	9.7711	0.062088	9.7711	9.7445	9.8066	0	192	19	1.1958073123591	0.0119380615222562	1.1958073123591	482.299583225011	0	4.8149246431181						52	8	2	NaN	NaN	NaN	0.00014165	1	31203	41.317	39.948	1	9405.7			13724	1327	11554	11845	13724	13724		
LWALQDFSCLK	11	Unmodified	_LWALQDFSCLK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.852655	1379.69076	0.16639	0.00011495	0.046029	3.1799E-05	0.21242	0.00014675	690.852894945771	16.679	0.15078	16.679	16.617	16.768	0	486	40	0.999498404980629	0.0262191597817407	0.999498404980629	404.334684963445	0	10.6066359461192						486	18	4	NaN	NaN	NaN	0.012332	1	14803	43.272	37.406	1	158190			13725	1594	11555	11846	13725	13725		
LWCTYHEK	8	Unmodified	_LWCTYHEK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	379.511298	1135.51206	-0.20614	-7.8231E-05	0.06583	2.4983E-05	-0.14031	-5.3248E-05	379.511362956968	4.2105	0.14187	4.2105	4.1662	4.3081	0	882	31	0.730840773481911	0.0205373620936247	0.730840773481911	444.418976348008	0	12.4886210098169						325	17	4	NaN	NaN	NaN	0.061541	1	7677	15.582	12.479	1	109990			13726	708	11556	11847	13726	13726		
LWCTYHEK	8	Unmodified	_LWCTYHEK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.763309	1135.51206	2.0352	0.0011576	1.3663	0.00077709	3.4015	0.0019346	568.764296635686	4.2017	0.097534	4.2017	4.1573	4.2549	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.757945997848	0	8.22343621086151						246	12	4	NaN	NaN	NaN	0.014287	1	7679	49.325	33.743	1	100220			13727	708	11556	11847	13727	13727		
LWDFQGFECIR	11	Unmodified	_LWDFQGFECIR_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.845361	1469.67617	0.49206	0.00036208	0.12151	8.9412E-05	0.61357	0.00045149	735.845703592667	16.599	0.13301	16.599	16.546	16.679	0	468	34	1.01159370163332	0.0221639917190946	1.01159370163332	408.978998333155	0	8.96071922719943						316	16	4	NaN	NaN	NaN	5.2252E-05	1	17567	70.389	66.653	1	74588			13728	1060	11557	11848	13728	13728		
LWDHATMTEVK	11	Unmodified	_LWDHATMTEVK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.220184	1329.63872	-0.63413	-0.00028169	0.74226	0.00032973	0.10813	4.8035E-05	444.220717643465	6.8707	0.14184	6.8707	6.8264	6.9683	-8.8818E-16	753	37	0.81889964927511	0.024501095294577	0.81889964927511	497.095211117973	0	14.8728567033341						410	17	5	NaN	NaN	NaN	0.064187	1	13269	23.836	21.677	1	197680			13729	3394	11558	11849	13729	13729		
LWDHATMTEVK	11	Unmodified	_LWDHATMTEVK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.826637	1329.63872	1.7536	0.0011676	-0.18637	-0.00012409	1.5673	0.0010435	665.826639046197	6.8707	0.16846	6.8707	6.8087	6.9771	0	501	43	0.98941132619024	0.0282496839404589	0.98941132619024	400.403530777187	0	11.4323263678958						440	20	3	NaN	NaN	NaN	5.5346E-12	1	13271	166.66	135.74	1	188740			13730	3394	11558	11849	13730	13730		
LWDLENGK	8	Unmodified	_LWDLENGK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.750724	973.486896	-0.27687	-0.00013504	-1.196	-0.00058334	-1.4729	-0.00071839	487.750062512516	8.9198	0.15976	8.9198	8.8576	9.0174	0	729	40	0.835224628594324	0.0265151904858787	0.835224628594324	339.27480972008	0	10.7706788076021						318	19	3	NaN	NaN	NaN	0.016231	1	3702	45.489	27.086	1	156260			13731	2830	11559	11850	13731	13731		
LWDLTTGTTTR	11	Unmodified	_LWDLTTGTTTR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.830234	1263.64592	1.9573	0.0012386	1.2901	0.00081641	3.2474	0.0020551	632.831684845029	10.773	0.36357	10.773	10.693	11.057	0	546	55	0.959108205975751	0.0363964682875382	0.959108205975751	388.348623282576	0	14.7371467199925						1183	42	5	NaN	NaN	NaN	1.8769E-07	1	11330	135.63	112.06	1	1359900			13732	1435	11560	11851	13732	13732		
LWDLVAGK	8	Unmodified	_LWDLVAGK_			0	0	0	O43660	O43660	O43660	PLRG1	Pleiotropic regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.260728	900.506903	-2.4254	-0.0010945	-1.7345	-0.00078271	-4.1599	-0.0018772	451.259590970846	11.704	0.088684	11.704	11.669	11.758	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	323.878263134119	0	6.65268211141404						121	11	2	NaN	NaN	NaN	0.017139	1	2336	46.835	32.3	1	32663			13733	214	11561	11852	13733	13733		
LWDMFDSWR	9	Unmodified	_LWDMFDSWR_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.281866	1254.54918	-0.003775	-2.3717E-06	0.3297	0.00020714	0.32592	0.00020477	628.28208069377	17.956	0.097524	17.956	17.92	18.018	0	570	34	0.942920803299286	0.0222715533643577	0.942920803299286	381.824175852187	0	9.01859146445702						239	12	4	NaN	NaN	NaN	0.00015486	1	11050	99.305	86.478	1	65467			13734	1826	11562	11853	13734	13734		
LWDNELQYVDQLLK	14	Unmodified	_LWDNELQYVDQLLK_			0	0	0	P49354	P49354	P49354	FNTA	Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.961977	1775.9094	1.4013	0.0012457	1.051	0.00093432	2.4523	0.00218	889.463709151373	19.561	0.062063	19.561	19.543	19.605	0	270	37	1.14398322290989	0.0239582842572883	1.14398322290989	461.758369464502	0	9.67054241029189						148	8	3	NaN	NaN	NaN	2.1606E-11	1	26572	104.04	94.463	1	30720			13735	1128	11563	11854	13735	13735		
LWDTDVEYK	9	Unmodified	_LWDTDVEYK_			0	0	0	Q9Y4P3	Q9Y4P3	Q9Y4P3	TBL2	Transducin beta-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.779679	1167.5448	0.42033	0.0002458	2	0.0011695	2.4203	0.0014153	584.780778272847	9.31	0.10644	9.31	9.2745	9.381	0	552	37	0.955063035883597	0.0242811063417099	0.955063035883597	387.054588861946	0	9.84030716203858						191	13	3	NaN	NaN	NaN	0.0012131	1	8529	56.378	46.299	1	41952			13736	3413	11564	11855	13736	13736		
LWDYIDGILIK	11	Unmodified	_LWDYIDGILIK_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.879196	1347.74384	0.089772	6.0585E-05	-2.1246	-0.0014338	-2.0348	-0.0013733	674.877777987307	18.124	0.088662	18.124	18.089	18.178	0	504	40	0.987393073566096	0.0262409175570258	0.987393073566096	399.53155555827	0	10.6179341252317						314	11	4	NaN	NaN	NaN	0.0022819	1	13842	47.561	31.682	1	69427			13737	2200	11565	11856	13737	13737		
LWEAGWK	7	Unmodified	_LWEAGWK_			0	0	0	Q9H0D6	Q9H0D6	Q9H0D6	XRN2	5-3 exoribonuclease 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.231971	888.449388	-1.7455	-0.00077716	-1.7747	-0.00079016	-3.5202	-0.0015673	445.230990773605	9.2125	0.088676	9.2125	9.177	9.2656	0	825	19	0.769815552739974	0.0122915375224674	0.769815552739974	313.121667722952	0	4.99956998038749						82	11	2	NaN	NaN	NaN	0.065843	1	2124	27.705	16.056	1	19637			13738	2843	11566	11857	13738	13738		
LWEEQLAAAK	10	Unmodified	_LWEEQLAAAK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.811313	1157.60807	0.88811	0.00051494	0.8162	0.00047324	1.7043	0.00098818	579.81178724046	9.2303	0.15968	9.2303	9.1858	9.3455	0	558	70	0.951016745717027	0.0465227050214623	0.951016745717027	385.453395183308	0	18.855960932753						618	19	3	NaN	NaN	NaN	7.1859E-05	1	8288	100.84	70.274	1	230720			13739	694	11567	11858	13739	13739		
LWEPLVEEPPADQWK	15	Unmodified	_LWEPLVEEPPADQWK_			0	0	0	Q16718	Q16718	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.961977	1835.9094	2.4248	0.0022283	0.84322	0.00077488	3.268	0.0030032	919.462388034233	15.473	0.38139	15.473	15.358	15.739	0	294	64	1.12800004657306	0.0419645157254074	1.12800004657306	455.191610795652	0	16.9343038303415						1009	44	4	NaN	NaN	NaN	2.0686E-06	1	28134	101.64	91.901	1	426070			13740	1902	11568	11859	13740	13740		
LWEVQCESPTFTVAWHPK	18	Unmodified	_LWEVQCESPTFTVAWHPK_			0	0	0	Q96J01	Q96J01	Q96J01	THOC3	THO complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1108.03568	2214.05681	0.48348	0.00053572	0.014892	1.6501E-05	0.49837	0.00055222	1108.53612966648	14.249	0.053206	14.249	14.232	14.285	0	69	25	1.27715511956461	0.015830364729515	1.27715511956461	514.720873266125	0	6.37997611478465						74	7	3	NaN	NaN	NaN	0.0022381	1	34839	39.82	35.748	1	10295			13741	2564	11569	11860	13741	13741		
LWEVQCESPTFTVAWHPK	18	Unmodified	_LWEVQCESPTFTVAWHPK_			0	0	0	Q96J01	Q96J01	Q96J01	THOC3	THO complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	739.026213	2214.05681	1.3217	0.00097675	-0.70921	-0.00052412	0.61246	0.00045262	739.359193510463	14.258	0.1773	14.258	14.205	14.382	0	477	67	1.0055473068722	0.0443310648439968	1.0055473068722	607.883938223932	0	26.7994773581094						489	21	4	NaN	NaN	NaN	7.7884E-20	1	34840	172.09	148.94	1	201380			13742	2564	11569	11860	13742	13742		
LWFTLDHPPK	10	Unmodified	_LWFTLDHPPK_			0	0	0	Q9UHQ9	Q9UHQ9	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.560758	1252.66044	-2.3012	-0.00096318	-1.2345	-0.00051671	-3.5357	-0.0014799	418.560083132554	12.068	0.21281	12.068	11.944	12.157	0	849	25	0.753417699604308	0.0164092837353766	0.753417699604308	457.634349589633	0	9.96718273729795						311	25	3	NaN	NaN	NaN	0.025402	1	10995	30.593	25.686	1	78207			13743	3220	11570	11861	13743	13743		
LWFTLDHPPK	10	Unmodified	_LWFTLDHPPK_			0	0	0	Q9UHQ9	Q9UHQ9	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.337498	1252.66044	0.50979	0.00031981	0.96429	0.00060494	1.4741	0.00092475	627.338151075832	12.077	0.1951	12.077	11.953	12.148	0	516	34	0.979317271586824	0.0222130658502994	0.979317271586824	396.568984183488	0	8.99505524453843						214	23	2	NaN	NaN	NaN	0.031612	1	10996	39.01	30.247	1	50628			13744	3220	11570	11861	13744	13744		
LWGDIYFNPK	10	Unmodified	_LWGDIYFNPK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.821681	1251.62881	1.0446	0.00065479	-0.31171	-0.00019539	0.7329	0.0004594	626.821460888227	14.418	0.133	14.418	14.365	14.498	0	498	34	0.991429299781895	0.0221946439688537	0.991429299781895	401.477294644361	0	8.98767629539537						299	16	3	NaN	NaN	NaN	3.787E-05	1	10962	84.368	70.373	1	87451			13745	1796	11571	11862	13745	13745		
LWGLTEMFPER	11	Unmodified	_LWGLTEMFPER_			0	0	0	Q9NS69	Q9NS69	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.84483	1377.67511	0.53086	0.00036621	0.19141	0.00013204	0.72226	0.00049825	689.844985120793	17.415	0.30149	17.415	17.282	17.583	0	477	73	1.0055473068722	0.0484079716427138	1.0055473068722	406.787597288626	0	19.5831288489128						1174	35	4	NaN	NaN	NaN	5.9878E-05	1	14734	105.36	83.315	1	451810			13746	3033	11572	11863	13746	13746		
LWGVIDVK	8	Unmodified	_LWGVIDVK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.276378	928.538203	-0.402	-0.00018704	-1.6033	-0.00074599	-2.0053	-0.00093303	465.275539586574	12.928	0.12415	12.928	12.884	13.008	0	741	64	0.827064408645228	0.0428739508300482	0.827064408645228	336.186494123308	0	17.4274736865769						379	15	3	NaN	NaN	NaN	0.0063831	1	2856	78.178	53.327	1	120590			13747	3213	11573	11864	13747	13747		
LWIDQSGEIDIVNHK	15	Unmodified	_LWIDQSGEIDIVNHK_			0	0	0	P22059	P22059	P22059	OSBP	Oxysterol-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.640576	1765.8999	0.86711	0.00051128	-1.9794	-0.0011671	-1.1123	-0.00065586	589.973247524631	12.937	0.088652	12.937	12.91	12.999	0	633	25	0.900343422309015	0.0162413229222488	0.900343422309015	545.144615814308	0	9.83388063419045						118	11	3	NaN	NaN	NaN	0.033402	1	26297	30.349	17.174	1	22334			13748	798	11574	11865	13748	13748		
LWIEGIEHK	9	Unmodified	_LWIEGIEHK_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	375.541475	1123.60259	-2.0634	-0.00077489	-1.4517	-0.00054517	-3.5151	-0.0013201	375.540988290133	9.2745	0.053234	9.2745	9.2568	9.31	0	870	13	0.739054571787983	0.00821150764030065	0.739054571787983	449.470773989368	0	4.99399210233736						49	7	2	NaN	NaN	NaN	0.057464	1	7365	22.386	12.993	1	7989.6			13749	2471	11575	11866	13749	13749		
LWLFGYDEQR	10	Unmodified	_LWLFGYDEQR_			0	0	0	Q9NT62	Q9NT62	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	442.887422	1325.64044	-1.9449	-0.00086137	1.2534	0.00055511	-0.69151	-0.00030626	442.888172937313	7.4649	0.11529	7.4649	7.4383	7.5536	0	807	34	0.782101955086014	0.0225203682551777	0.782101955086014	474.772675543316	0	13.6709228524504						155	14	2	NaN	NaN	NaN	0.06642	1	13151	10.702	7.8236	1	37113			13750	3040	11576	11867	13750	13750		
LWLFGYDEQR	10	Unmodified	_LWLFGYDEQR_			0	0	0	Q9NT62	Q9NT62	Q9NT62	ATG3	Ubiquitin-like-conjugating enzyme ATG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.827495	1325.64044	0.34504	0.00022904	0.27624	0.00018338	0.62128	0.00041242	663.827560858304	15.854	0.15962	15.854	15.792	15.952	0	501	40	0.98941132619024	0.0262445464858834	0.98941132619024	400.415950624587	0	10.621199446261						397	19	4	NaN	NaN	NaN	4.872E-05	1	13152	88.921	81.77	1	128250			13751	3040	11576	11867	13751	13751		
LWNEVLASLK	10	Unmodified	_LWNEVLASLK_			0	0	0	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.837331	1171.66011	0.93667	0.00054967	0.029901	1.7547E-05	0.96657	0.00056722	586.837382776196	15.455	0.1686	15.455	15.411	15.579	0	567	67	0.944945209309785	0.0445462106400273	0.944945209309785	382.938481233701	0	18.0523252344636						413	20	3	NaN	NaN	NaN	0.0090914	1	8658	51.872	2.5472	1	109140			13752	2632	11577	11868	13752	13752		
LWNEWCR	7	Unmodified	_LWNEWCR_			0	0	0	O95456	O95456	O95456	PSMG1	Proteasome assembly chaperone 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.242544	1062.47053	-0.4841	-0.00025766	0.98313	0.00052326	0.49904	0.00026561	532.243271827785	9.3721	0.15075	9.3721	9.3278	9.4785	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	349.626359720043	0	7.43344515140416						198	18	2	NaN	NaN	NaN	0.0047507	1	5780	88.35	79.587	1	77646			13753	436	11578	11869	13753	13753		
LWNTLGVCK	9	Unmodified	_LWNTLGVCK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.789327	1089.5641	1.1217	0.00061223	-0.34758	-0.0001897	0.77417	0.00042253	545.789371729291	9.7179	0.25714	9.7179	9.6115	9.8686	0	657	64	0.884090832094921	0.0426719476596595	0.884090832094921	358.591218211062	0	17.3079339126922						891	30	3	NaN	NaN	NaN	0.0013983	1	6452	65.313	33.185	1	1076600			13754	1435	11579	11870	13754	13754		
LWNTTEVAPALSVFNDTK	18	Unmodified	_LWNTTEVAPALSVFNDTK_			0	0	0	O43815	O43815	O43815	STRN	Striatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.5151	2005.01566	0.73129	0.00073386	-4.2131	-0.0042279	-3.4818	-0.003494	1003.51297616617	17.22	0.15962	17.22	17.149	17.309	0	192	46	1.1958073123591	0.0298513074071098	1.1958073123591	482.249178981123	0	12.0385352554767						333	19	3	NaN	NaN	NaN	0.069511	1	31721	19.637	13.115	1	90036			13755	234	11580	11871	13755	13755		
LWQTVVGK	8	Unmodified	_LWQTVVGK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.774003	929.533452	-0.72018	-0.00033544	-1.4969	-0.00069721	-2.2171	-0.0010327	465.773307936422	7.864	0.24837	7.864	7.7753	8.0237	0	768	34	0.808687310729125	0.0224765256052036	0.808687310729125	328.71140902756	0	9.13615226022176						467	29	4	NaN	NaN	NaN	0.0018943	1	2872	79.809	37.686	1	266940			13756	3394	11581	11872	13756	13756		
LWSLDSDEPVADIEGHTVR	19	Unmodified	_LWSLDSDEPVADIEGHTVR_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.683281	2138.02801	1.303	0.00092996	1.5569	0.0011111	2.8599	0.0020411	714.018445734805	13.948	0.2394	13.948	13.85	14.09	0	516	70	0.979317271586824	0.0464070054618659	0.979317271586824	592.158218756538	0	28.0606607168238						718	28	4	NaN	NaN	NaN	3.8542E-07	1	33851	74.733	61.514	1	178260			13757	188	11582	11873	13757	13757		
LWSNFWGALSPDEYYAR	17	Unmodified	_LWSNFWGALSPDEYYAR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.98651	2073.95848	0.61276	0.00063604	1.4834	0.0015397	2.0961	0.0021757	1038.48907045123	18.931	0.044322	18.931	18.914	18.958	0	174	19	1.20774045859593	0.0119265972436806	1.20774045859593	486.950256225064	0	4.80869837750998						47	6	2	NaN	NaN	NaN	0.03853	1	32917	37.886	34.992	1	8956			13758	268	11583	11874	13758	13758		
LWSVPDCNLLHTLR	14	Unmodified	_LWSVPDCNLLHTLR_			0	0	0	O43172	O43172	O43172	PRPF4	U4/U6 small nuclear ribonucleoprotein Prp4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.30313	1722.88756	-0.19627	-0.00011292	1.3309	0.00076569	1.1347	0.00065278	575.303825037719	14.897	0.10638	14.897	14.852	14.959	0	600	58	0.922661313351899	0.0385384095033867	0.922661313351899	558.76626704082	0	23.3389683779717						443	13	4	NaN	NaN	NaN	0.00015763	1	25133	86.243	69.955	1	109070			13759	188	11584	11875	13759	13759		
LWTEIPTAITIK	12	Unmodified	_LWTEIPTAITIK_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.405578	1384.7966	1.1349	0.00078697	-2.989	-0.0020726	-1.8541	-0.0012856	693.402920945264	15.562	0.070946	15.562	15.526	15.597	0	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	405.135658268259	0	8.15696055067878						174	9	3	NaN	NaN	NaN	3.2216E-05	1	14989	83.438	63.255	1	54265			13760	1758	11585	11876	13760	13760		
LWTLVSEQTR	10	Unmodified	_LWTLVSEQTR_			0	0	0	P46776	P46776	P46776	RPL27A	60S ribosomal protein L27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.83532	1231.65609	1.6476	0.0010163	-0.2207	-0.00013614	1.4269	0.00088019	616.8353969955	11.234	0.31927	11.234	11.119	11.438	0	567	67	0.944945209309785	0.0445215433730949	0.944945209309785	382.721352653269	0	18.0320987228541						1458	37	4	NaN	NaN	NaN	4.9446E-05	1	10373	119.07	97.793	1	1535200			13761	1085	11586	11877	13761	13761		
LWVLETK	7	Unmodified	_LWVLETK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.763104	887.511654	-1.0086	-0.00044857	-0.793	-0.0003527	-1.8016	-0.00080127	444.762673008533	11.11	0.088679	11.11	11.075	11.163	0	738	25	0.829104889055312	0.0163227098451795	0.829104889055312	337.242959483298	0	6.63935172454194						129	11	2	NaN	NaN	NaN	0.0058068	1	2118	92.319	35.429	1	31666			13762	1807	11587	11878	13762	13762		
LWYCDLQQESSGIAGILK	18	Unmodified	_LWYCDLQQESSGIAGILK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.350585	2080.02993	-0.19446	-0.00013502	1.6672	0.0011576	1.4728	0.0010226	694.352481762953	18.071	0.053206	18.071	18.053	18.107	0	522	16	0.975277694896658	0.0100996404652823	0.975277694896658	589.821648536336	0	6.10799018579871						88	7	3	NaN	NaN	NaN	0.012153	1	33027	54.199	51.114	1	16933			13763	1105	11588	11879	13763	13763		
LWYTLDR	7	Unmodified	_LWYTLDR_			0	0	0	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.75581	965.497067	0.34808	0.00016838	0.23794	0.0001151	0.58602	0.00028349	483.755613997797	10.906	0.13303	10.906	10.853	10.986	0	690	37	0.86171403876517	0.024433089026624	0.86171403876517	350.075353423477	0	9.92605654711127						287	16	3	NaN	NaN	NaN	0.02927	1	3553	46.835	13.864	1	76766			13764	474	11589	11880	13764	13764		
LWYVLLK	7	Unmodified	_LWYVLLK_			0	0	0	Q9HD33	Q9HD33	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.791664	933.568775	-0.61873	-0.00028944	-0.69722	-0.00032615	-1.316	-0.00061559	467.7913270659	15.056	0.09754	15.056	15.012	15.109	0	660	28	0.882057989648486	0.018298122879973	0.882057989648486	358.512199051566	0	7.43726642601945						176	12	3	NaN	NaN	NaN	0.0090331	1	2953	60.001	36.692	1	43436			13765	2969	11590	11881	13765	13765		
LYAVFTDYEHDK	12	Unmodified	_LYAVFTDYEHDK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.90503	1499.69326	-0.2803	-0.0001404	-0.89977	-0.0004507	-1.1801	-0.00059111	500.904583590294	9.8154	0.13302	9.8154	9.7711	9.9041	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	492.801154285018	0	12.3847669616243						327	16	4	NaN	NaN	NaN	0.024532	1	18512	19.324	16.445	1	129930			13766	2345	11591	11882	13766	13766		
LYAVFTDYEHDK	12	Unmodified	_LYAVFTDYEHDK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.853906	1499.69326	2.1152	0.0015882	2.2845	0.0017153	4.3997	0.0033035	750.855535191452	9.8154	0.097525	9.8154	9.7622	9.8598	0	378	25	1.07192009927972	0.0160537710048607	1.07192009927972	433.287543574888	0	6.48919542462534						150	12	3	NaN	NaN	NaN	0.0015707	1	18513	69.915	61.441	1	27869			13767	2345	11591	11882	13767	13767		
LYAVHQEGNK	10	Unmodified	_LYAVHQEGNK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.798737	1157.58292	1.7348	0.0010058	-1.3843	-0.00080264	0.35046	0.00020319	579.797955501334	2.3749	0.20396	2.3749	2.3483	2.5523	0	654	22	0.886123392477847	0.0142279235023115	0.886123392477847	359.151789870582	0	5.76667339489592						263	24	3	NaN	NaN	NaN	4.9396E-05	1	8274	90.761	63.025	1	46358			13768	1174	11592	11883	13768	13768		
LYAVHQEGNK	10	Unmodified	_LYAVHQEGNK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.86825	1157.58292	-0.077389	-2.9939E-05	1.1701	0.00045267	1.0927	0.00042273	386.868705825587	2.3749	0.17733	2.3749	2.3483	2.5256	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	459.289963549263	0	9.97330712442118						267	21	3	NaN	NaN	NaN	0.038285	1	8275	37.722	32.414	1	64797			13769	1174	11592	11883	13769	13769		
LYAYEPADTALLLDNMK	17	Unmodified	_LYAYEPADTALLLDNMK_			0	0	0	O95994	O95994	O95994	AGR2	Anterior gradient protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.987334	1939.96012	1.2424	0.0012064	1.5273	0.001483	2.7697	0.0026894	970.988226400248	16.706	0.23937	16.706	16.555	16.794	0	201	88	1.18983705239708	0.0577204943361664	1.18983705239708	479.952077719891	0	23.2830799207765						712	28	3	NaN	NaN	NaN	0.00083627	1	30511	62.398	54.433	1	171760			13770	466	11593	11884	13770	13770		
LYCIYVAIGQK	11	Unmodified	_LYCIYVAIGQK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.357573	1326.70059	1.0696	0.00071057	-0.13717	-9.1132E-05	0.93239	0.00061944	664.357616002445	12.626	0.23054	12.626	12.538	12.768	0	468	40	1.01159370163332	0.0261938098951453	1.01159370163332	409.389811406976	0	10.6005789435912						404	27	3	NaN	NaN	NaN	0.0034101	1	13190	53.878	46.232	1	126490			13771	840	11594	11885	13771	13771		
LYCNVDSNK	9	Unmodified	_LYCNVDSNK_			0	0	0	Q01780	Q01780	Q01780	EXOSC10	Exosome component 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.755681	1111.49681	1.2353	0.00068776	1.6621	0.00092538	2.8974	0.0016131	556.756210974387	3.173	0.1153	3.173	3.1375	3.2528	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	357.678508060554	0	6.5950726046371						103	14	2	NaN	NaN	NaN	0.010244	1	7020	51.864	29.936	1	20994			13772	1520	11595	11886	13772	13772		
LYCPVEFSK	9	Unmodified	_LYCPVEFSK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.781167	1141.54778	1.1483	0.00065657	-3.4919	-0.0019966	-2.3436	-0.00134	571.780800608536	9.0174	0.16848	9.0174	8.9642	9.1326	0	606	67	0.918606045818476	0.0446203355685258	0.918606045818476	372.378805443991	0	18.087914109811						524	20	3	NaN	NaN	NaN	0.0056208	1	7828	65.156	49.658	1	246220			13773	1222	11596	11887	13773	13773		
LYCQELK	7	Unmodified	_LYCQELK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.241678	952.468803	1.2018	0.00057354	1.6679	0.00079599	2.8697	0.0013695	477.242393961887	4.4854	0.15961	4.4854	4.4411	4.6007	0	696	40	0.857641857947968	0.0264783729728815	0.857641857947968	348.487909732908	0	10.7590281012236						305	19	3	NaN	NaN	NaN	0.0091525	1	3288	84.699	51.728	1	79137			13774	2769	11597	11888	13774	13774		
LYDAYELK	8	Unmodified	_LYDAYELK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.760758	1013.50696	0.67998	0.00034527	1.3013	0.00066074	1.9813	0.001006	507.761518455081	7.9083	0.25727	7.9083	7.8552	8.1124	0	669	40	0.875957769340875	0.0264416320907981	0.875957769340875	355.625147041064	0	10.7348888604201						669	30	4	NaN	NaN	NaN	0.0028727	1	4589	90.308	29.6	1	611110			13775	591	11598	11889	13775	13775		
LYDDIDFDIEEFAK	14	Unmodified	_LYDDIDFDIEEFAK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.901251	1731.78795	1.1896	0.0010313	1.3568	0.0011762	2.5464	0.0022075	866.902622969933	18.133	0.062067	18.133	18.107	18.169	0	279	37	1.13799159301878	0.0239714689101356	1.13799159301878	459.430553051655	0	9.67777379587579						201	8	3	NaN	NaN	NaN	0.00022276	1	25370	68.548	66.565	1	47345			13776	2577	11599	11890	13776	13776		
LYDFYLFK	8	Unmodified	_LYDFYLFK_			0	0	0	Q2TAL8	Q2TAL8	Q2TAL8	QRICH1	Glutamine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.789318	1107.56408	-0.34261	-0.00019008	-0.65462	-0.00036318	-0.99723	-0.00055325	554.788729870733	16.032	0.14187	16.032	15.97	16.111	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	360.990837763329	0	9.06295958914234						262	17	3	NaN	NaN	NaN	0.0029631	1	6923	56.014	36.527	1	75623			13777	1925	11600	11891	13777	13777		
LYDIDVAK	8	Unmodified	_LYDIDVAK_			0	0	0	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.755475	935.496398	0.14418	6.7585E-05	0.29446	0.00013803	0.43864	0.00020561	468.755661139991	8.1036	0.24846	8.1036	8.0414	8.2898	0	720	46	0.841341816837976	0.03057744930274	0.841341816837976	341.952897691763	0	12.4278232507116						602	29	4	NaN	NaN	NaN	0.0051847	1	2979	78.178	53.327	1	684870			13778	1395	11601	11892	13778	13778		
LYDILGVPPGASENELK	17	Unmodified	_LYDILGVPPGASENELK_			0	0	0	O60884	O60884	O60884	DNAJA2	DnaJ homolog subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.980367	1813.94618	0.87901	0.00079812	-2.9821	-0.0027077	-2.1031	-0.0019096	908.477981508456	14.79	0.15077	14.79	14.737	14.888	0	285	82	1.13399579921816	0.0539172985517062	1.13399579921816	457.65268566252	0	21.7596895004981						348	18	2	NaN	NaN	NaN	0.062243	1	27581	19.197	15.909	1	153840			13779	291	11602	11893	13779	13779		
LYDLNHNEIGELIR	14	Unmodified	_LYDLNHNEIGELIR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.965171	1697.87368	-0.90158	-0.00051117	-0.47793	-0.00027097	-1.3795	-0.00078214	566.9652212492	13.061	0.15075	13.061	13.017	13.167	0	750	37	0.820941264895493	0.024497688241599	0.820941264895493	497.222714199852	0	14.8376108742205						664	18	7	NaN	NaN	NaN	5.2045E-06	1	24439	131.54	120.19	1	518970			13780	350	11603	11894	13780	13780		
LYDLNHNEIGELIR	14	Unmodified	_LYDLNHNEIGELIR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.944118	1697.87368	1.5952	0.0013558	0.0096756	8.2237E-06	1.6049	0.0013641	849.944262974258	13.061	0.15073	13.061	12.999	13.15	0	306	40	1.12000185836644	0.0259994834338622	1.12000185836644	452.239446693165	0	10.4981897258522						516	18	5	NaN	NaN	NaN	0.00014071	1	24441	91.939	80.584	1	221580			13781	350	11603	11894	13781	13781		
LYDMVLQFLR	10	Unmodified	_LYDMVLQFLR_			0	0	0	Q8WX92	Q8WX92	Q8WX92	NELFB	Negative elongation factor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.352291	1296.69003	0.1242	8.0648E-05	4.9522	0.0032157	5.0764	0.0032964	649.356352258649	19.029	0.23054	19.029	18.967	19.197	0	534	34	0.967195187796614	0.0222345870481429	0.967195187796614	391.515175016885	0	9.00043584730111						229	27	3	NaN	NaN	NaN	0.0092623	1	12259	62.969	44.566	1	47496			13782	2394	11604	11895	13782	13782		
LYDNLLEQNLIR	12	Unmodified	_LYDNLLEQNLIR_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.411923	1502.80929	1.3431	0.0010105	-0.79177	-0.00059574	0.5513	0.0004148	752.411719769128	15.003	0.18621	15.003	14.941	15.127	0	387	70	1.06589869032374	0.0461960076495578	1.06589869032374	430.845435149015	0	18.6728243486966						828	22	5	NaN	NaN	NaN	1.6807E-23	1	18609	215.84	194.69	1	549710			13783	63	11605	11896	13783	13783		
LYDVVAVFPK	10	Unmodified	_LYDVVAVFPK_			0	0	0	P78346	P78346	P78346	RPP30	Ribonuclease P protein subunit p30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.828975	1149.6434	0.45683	0.00026305	0.75965	0.00043743	1.2165	0.00070048	575.829376088178	14.125	0.19508	14.125	14.01	14.205	0	540	25	0.963152256458504	0.0161739645709869	0.963152256458504	390.403837320624	0	6.55594978972374						263	23	3	NaN	NaN	NaN	0.0052135	1	8066	49.96	27.574	1	52923			13784	1458	11606	11897	13784	13784		
LYEAMCEFHEAEK	13	Unmodified	_LYEAMCEFHEAEK_			0	0	0	Q6PD62	Q6PD62	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.855266	1655.69598	2.6498	0.0021963	-1.5071	-0.0012492	1.1428	0.00094718	828.854064388905	7.9261	0.088652	7.9261	7.8906	7.9793	0	312	31	1.11600111266355	0.020009239153943	1.11600111266355	450.71694406721	0	8.08108793283435						194	11	4	NaN	NaN	NaN	1.8023E-05	1	23202	81.799	75.771	1	40965			13785	2071	11607	11898	13785	13785		
LYELDGLR	8	Unmodified	_LYELDGLR_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.766374	977.518196	1.1851	0.00058041	0.60985	0.00029868	1.7949	0.0008791	489.766676100033	10.108	0.15962	10.108	10.055	10.214	0	615	34	0.912521036363781	0.0223178910428838	0.912521036363781	370.651915596334	0	9.06518177386698						341	19	3	NaN	NaN	NaN	0.00047104	1	3792	89.123	61.418	1	155760			13786	3434	11608	11899	13786	13786		
LYELIITR	8	Unmodified	_LYELIITR_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.808042	1019.60153	-1.1642	-0.00059467	-0.3771	-0.00019263	-1.5413	-0.0007873	510.808066173587	11.953	0.062073	11.953	11.917	11.979	0	657	34	0.884090832094921	0.0223581674407913	0.884090832094921	358.898309939553	0	9.07633946257698						135	8	3	NaN	NaN	NaN	0.014287	1	4736	58.286	24.473	1	40723			13787	559	11609	11900	13787	13787		
LYEMVSYCQNISK	13	Unmodified	_LYEMVSYCQNISK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.881284	1633.74801	2.1658	0.0017714	1.403	0.0011475	3.5689	0.0029189	817.882727071093	9.9218	0.11526	9.9218	9.8864	10.002	0	324	31	1.1079963157843	0.020020262712183	1.1079963157843	447.53393903247	0	8.0864411771135						231	14	4	NaN	NaN	NaN	0.0015925	1	22586	55.754	50.925	1	42523			13788	1076	11610	11901	13788	13788		
LYENFISEFEHR	12	Unmodified	_LYENFISEFEHR_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.587812	1582.74161	-0.99092	-0.00052379	-0.96689	-0.00051108	-1.9578	-0.0010349	528.587232065548	14.099	0.17734	14.099	14.045	14.223	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	502.462496363514	0	13.6025193805285						504	21	5	NaN	NaN	NaN	1.1455E-07	1	21049	135.28	120.83	1	232450			13789	3300	11611	11902	13789	13789		
LYENFISEFEHR	12	Unmodified	_LYENFISEFEHR_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.37808	1582.74161	2.1893	0.0017347	3.541	0.0028058	5.7303	0.0045406	792.382316405271	14.09	0.20393	14.09	14.036	14.24	-1.7764E-15	336	97	1.09998710857178	0.0641709123177354	1.09998710857178	444.419279377542	0	25.9264771259694						808	24	5	NaN	NaN	NaN	2.7886E-05	1	21051	124.46	88.245	1	384410			13790	3300	11611	11902	13790	13790		
LYEQLSGK	8	Unmodified	_LYEQLSGK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.2531	936.491647	0.36047	0.00016915	0.69059	0.00032406	1.0511	0.00049321	469.253671851146	4.6982	0.40786	4.6982	4.6007	5.0085	0	744	58	0.82502364452135	0.0387691446522459	0.82502364452135	335.315419380386	0	15.7569932503314						1024	47	4	NaN	NaN	NaN	0.00072604	1	3004	90.308	32.023	1	763710			13791	903	11612	11903	13791	13791		
LYEWTTEK	8	Unmodified	_LYEWTTEK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.263665	1068.51278	0.97772	0.00052334	4.792	0.002565	5.7698	0.0030883	535.267082238287	7.3408	0.27488	7.3408	7.2787	7.5536	0	678	85	0.869855008346864	0.0569472973653883	0.869855008346864	352.903867812492	0	23.1037601771211						642	32	4	NaN	NaN	NaN	0.013093	1	5915	62.88	30.928	1	256630			13792	1884	11613	11904	13792	13792		
LYFEELSLER	10	Unmodified	_LYFEELSLER_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.834985	1297.65542	1.6986	0.0011038	0.78356	0.00050918	2.4821	0.001613	649.835564772777	14.347	0.36353	14.347	14.196	14.56	1.7764E-15	522	70	0.975277694896658	0.0464648012234402	0.975277694896658	394.783849905255	0	18.8085436671612						1291	42	5	NaN	NaN	NaN	4.4525E-06	1	12291	138.26	112.4	1	1462000			13793	922	11614	11905	13793	13793		
LYGADGLVFGALTEDGHIDK	20	Unmodified	_LYGADGLVFGALTEDGHIDK_			0	0	0	Q9NTM9	Q9NTM9	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.684621	2090.03203	1.1095	0.00077407	-0.17028	-0.0001188	0.93921	0.00065527	698.01871272106	15.544	0.14193	15.544	15.491	15.633	0	495	31	0.993446994398923	0.0201783433575858	0.993446994398923	600.790908453279	0	12.202931112818						299	17	4	NaN	NaN	NaN	0.00073848	1	33187	53.363	51.889	1	81320			13794	3045	11615	11906	13794	13794		
LYGDDALDNALQTFIK	16	Unmodified	_LYGDDALDNALQTFIK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.956891	1795.89923	0.95327	0.00085695	8.5603	0.0076954	9.5136	0.0085523	899.467550321115	19.357	0.088774	19.357	19.312	19.401	0	243	22	1.16194328902838	0.0139574234245761	1.16194328902838	468.96731330688	0	5.63330020140944						73	11	2	NaN	NaN	NaN	1.8675E-06	1	27114	76.563	62.785	1	39865			13795	3235	11616	11907	13795	13795		
LYGEFADPFK	10	Unmodified	_LYGEFADPFK_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.792589	1185.57063	0.3873	0.00022998	-0.85711	-0.00050895	-0.46981	-0.00027897	593.791930531329	13.363	0.17739	13.363	13.274	13.451	0	612	43	0.914549654013882	0.0283986853568062	0.914549654013882	370.570100753212	0	11.5069790336072						491	21	4	NaN	NaN	NaN	0.0057322	1	9016	33.426	24.663	1	164790			13796	352	11617	11908	13796	13796		
LYGLLDPSVFHVK	13	Unmodified	_LYGLLDPSVFHVK_			0	0	0	Q9BVI4	Q9BVI4	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.416477	1486.8184	1.4725	0.0010961	-4.7754	-0.0035549	-3.3029	-0.0024587	744.411900934144	15.544	0.12414	15.544	15.517	15.642	0	414	37	1.04781950764076	0.0241138939536367	1.04781950764076	423.579255243777	0	9.74800065032838						212	15	3	NaN	NaN	NaN	0.0024318	1	18145	51.872	50.616	1	52412			13797	2764	11618	11909	13797	13797		
LYGLLDPSVFHVK	13	Unmodified	_LYGLLDPSVFHVK_			0	0	0	Q9BVI4	Q9BVI4	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.61341	1486.8184	-0.22017	-0.00010934	-2.3345	-0.0011593	-2.5546	-0.0012687	496.612182207729	15.544	0.12414	15.544	15.5	15.624	0	705	40	0.851531465363931	0.0264857303381943	0.851531465363931	516.341986331267	0	16.0601165881907						383	15	4	NaN	NaN	NaN	0.00825	1	18146	50.834	44.571	1	109580			13798	2764	11618	11909	13798	13798		
LYGPSSVSFADDFVR	15	Unmodified	_LYGPSSVSFADDFVR_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.404295	1658.79404	2.0004	0.0016611	1.8465	0.0015333	3.8469	0.0031945	830.405524758152	14.834	0.1951	14.834	14.746	14.941	0	336	61	1.09998710857178	0.0400626050188091	1.09998710857178	444.242504947498	0	16.1797459893746						984	23	5	NaN	NaN	NaN	3.4482E-17	1	23286	157.74	124.02	1	532440			13799	1164	11619	11910	13799	13799		
LYGSAGPPPTGEEDTAEK	18	Unmodified	_LYGSAGPPPTGEEDTAEK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.923246	1817.83194	3.5787	0.0032563	-2.6006	-0.0023664	0.97808	0.00088998	909.921217969542	5.576	0.7449	5.576	5.4697	6.2146	0	327	136	1.10599442759226	0.0901845100185417	1.10599442759226	446.344783215652	0	36.3956495343896						4087	85	6	NaN	NaN	NaN	3.7634E-19	1	27658	181.08	161.52	1	2128400			13800	638	11620	11911	13800	13800		
LYGSAGPPPTGEEDTAEKDEL	21	Unmodified	_LYGSAGPPPTGEEDTAEKDEL_			0	0	1	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.50005	2174.98554	2.3742	0.0025843	-1.2199	-0.0013278	1.1544	0.0012565	1089.00024134267	8.9287	0.56772	8.9287	8.7866	9.3544	0	174	121	1.20774045859593	0.0795435363528838	1.20774045859593	486.799803830341	0	32.0613403458984						4082	65	6	NaN	NaN	NaN	3.6875E-28	1	34371	199.04	179.15	1	1541400			13801	638	11621	11912	13801	13801		
LYGSGDQEAWQK	12	Unmodified	_LYGSGDQEAWQK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.322773	1380.63099	1.5542	0.0010744	0.55704	0.0003851	2.1112	0.0014595	691.323224175774	6.2323	0.17739	6.2323	6.1879	6.3653	0	534	40	0.967195187796614	0.0262736050362692	0.967195187796614	391.264173407546	0	10.6285892306506						354	21	3	NaN	NaN	NaN	4.7008E-05	1	14838	81.099	67.104	1	110080			13802	880	11622	11913	13802	13802		
LYHDIAQQAFK	11	Unmodified	_LYHDIAQQAFK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	445.234822	1332.68264	-0.9305	-0.00041429	-0.32073	-0.0001428	-1.2512	-0.00055709	445.234686224406	6.8974	0.15074	6.8974	6.853	7.0037	0	828	31	0.767766820543916	0.0204858974609469	0.767766820543916	466.045212096731	0	12.4352266491734						216	18	2	NaN	NaN	NaN	0.022381	1	13378	50.834	47.227	1	153140			13803	1728	11623	11914	13803	13803		
LYHDIAQQAFK	11	Unmodified	_LYHDIAQQAFK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.348594	1332.68264	1.8965	0.0012657	0.3184	0.00021248	2.2149	0.0014781	667.348523705511	6.8885	0.14186	6.8885	6.853	6.9949	0	480	37	1.00353128488872	0.0241939396115666	1.00353128488872	406.108174293807	0	9.79078260197684						237	17	2	NaN	NaN	NaN	0.0016376	1	13379	76.85	67.457	1	144590			13804	1728	11623	11914	13804	13804		
LYHNEVEIEK	10	Unmodified	_LYHNEVEIEK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.324785	1272.63502	2.5885	0.0016497	0.25889	0.000165	2.8474	0.0018147	637.323696868436	4.4677	0.15073	4.4677	4.4322	4.5829	0	528	34	0.971237000454584	0.0222253598495629	0.971237000454584	393.229620364749	0	8.99849347998781						256	18	4	NaN	NaN	NaN	0.0044824	1	11572	60.547	41.224	1	61474			13805	1764	11624	11915	13805	13805		
LYIDSYEK	8	Unmodified	_LYIDSYEK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.758215	1029.50188	1.0945	0.00056447	1.5257	0.00078689	2.6201	0.0013514	515.758744924775	7.1811	0.15961	7.1811	7.1102	7.2698	0	642	34	0.894250814548268	0.0223457630982734	0.894250814548268	362.976266325427	0	9.07014176073301						406	19	4	NaN	NaN	NaN	0.020524	1	4972	47.349	21.126	1	157970			13806	991	11625	11916	13806	13806		
LYIGLAGLATDVQTVAQR	18	Unmodified	_LYIGLAGLATDVQTVAQR_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.354547	1888.04181	-0.31163	-0.00019644	-0.016265	-1.0253E-05	-0.32789	-0.00020669	630.68893907554	17.956	0.15074	17.956	17.903	18.053	0	618	34	0.910492137470517	0.0223209853619647	0.910492137470517	551.011883969933	0	13.5082201044925						428	18	5	NaN	NaN	NaN	1.3184E-10	1	29336	186.27	176.69	1	195310			13807	1142	11626	11917	13807	13807		
LYIGLAGLATDVQTVAQR	18	Unmodified	_LYIGLAGLATDVQTVAQR_			0	0	0	P49720	P49720	P49720	PSMB3	Proteasome subunit beta type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.028182	1888.04181	1.2691	0.0011993	0.23192	0.00021917	1.501	0.0014185	945.529923819482	17.947	0.15962	17.947	17.912	18.071	0	201	43	1.18983705239708	0.0278669582266173	1.18983705239708	480.045811003031	0	11.2430660443239						599	19	5	NaN	NaN	NaN	1.2345E-14	1	29337	151.08	141.81	1	285290			13808	1142	11626	11917	13808	13808		
LYIGNLNESVTPADLEK	17	Unmodified	_LYIGNLNESVTPADLEK_			0	0	0	Q9NZI8	Q9NZI8	Q9NZI8	IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.488556	1874.96256	1.898	0.0017812	-0.11011	-0.00010334	1.7878	0.0016779	938.488221333071	13.93	0.12413	13.93	13.868	13.992	0	201	40	1.18983705239708	0.025878237088949	1.18983705239708	480.070239030729	0	10.4412376803674						329	15	4	NaN	NaN	NaN	4.9535E-10	1	29043	105.08	89.549	1	67324			13809	3132	11627	11918	13809	13809		
LYIGNLSENAAPSDLESIFK	20	Unmodified	_LYIGNLSENAAPSDLESIFK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.05733	2180.10011	0.2587	0.00028226	0.90316	0.00098539	1.1619	0.0012677	1091.56008236092	18.408	0.10644	18.408	18.381	18.488	0	81	67	1.2692388538616	0.0435573750339335	1.2692388538616	511.580127233454	0	17.5562601113413						468	13	4	NaN	NaN	NaN	2.2042E-16	1	34457	137.89	127.87	1	117160			13810	78	11628	11919	13810	13810		
LYIVGGSDPYGQK	13	Unmodified	_LYIVGGSDPYGQK_			0	0	0	Q9Y6Y0	Q9Y6Y0	Q9Y6Y0	IVNS1ABP	Influenza virus NS1A-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.858992	1395.70343	1.5851	0.0011078	0.33459	0.00023383	1.9197	0.0013416	698.858911293434	9.1415	0.11528	9.1415	9.0883	9.2036	0	453	52	1.02166545906632	0.0342439860536077	1.02166545906632	413.255042760284	0	13.8514029179365						319	13	4	NaN	NaN	NaN	0.0030226	1	15320	47.561	38.047	1	98150			13811	3477	11629	11920	13811	13811		
LYIYHVTGQGPPSLLLSK	18	Unmodified	_LYIYHVTGQGPPSLLLSK_			0	0	0	Q658Y4	Q658Y4	Q658Y4	FAM91A1	Protein FAM91A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	662.706809	1985.0986	-0.42281	-0.0002802	-1.6726	-0.0011084	-2.0954	-0.0013887	663.040152421275	13.779	0.10638	13.779	13.726	13.832	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	523.769342394844	0	9.84999761795279						241	13	4	NaN	NaN	NaN	0.0056616	1	31372	33.526	30.811	1	49869			13812	2018	11630	11921	13812	13812		
LYLADPMK	8	Unmodified	_LYLADPMK_			0	0	0	P49458	P49458	P49458	SRP9	Signal recognition particle 9 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.754421	949.494289	0.050662	2.4103E-05	-0.4368	-0.00020781	-0.38614	-0.00018371	475.754688213279	9.647	0.20394	9.647	9.5583	9.7622	0	708	73	0.849494101904619	0.0489273390370114	0.849494101904619	345.192603566676	0	19.8816631097362						783	24	4	NaN	NaN	NaN	0.0050231	1	3242	51.43	29.502	1	300820			13813	1133	11631	11922	13813	13813		
LYLEDDDPVQAEAYINR	17	Unmodified	_LYLEDDDPVQAEAYINR_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.484	2022.95345	2.2439	0.0022719	-0.085366	-8.6432E-05	2.1585	0.0021855	1012.48480549429	13.575	0.15075	13.575	13.478	13.629	0	183	85	1.20177511391933	0.0556957092584938	1.20177511391933	484.626330065149	0	22.4597820887572						578	18	3	NaN	NaN	NaN	4.0988E-10	1	32032	84.102	80.597	1	121660			13814	2731	11632	11923	13814	13814		
LYLEGTGINPVPVDLHEQQLSLNQHNR	27	Unmodified	_LYLEGTGINPVPVDLHEQQLSLNQHNR_			0	0	0	Q4G0N4	Q4G0N4	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	771.901988	3083.57885	1.326	0.0010235	1.2565	0.00096987	2.5825	0.0019934	772.405715296641	13.682	0.097516	13.682	13.646	13.744	0	420	37	1.04379886199097	0.0241338680851122	1.04379886199097	839.86299577763	0	19.418628902318						217	12	5	NaN	NaN	NaN	0.021837	1	38330	28.263	28.159	1	49466			13815	1941	11633	11924	13815	13815		
LYLEQLR	7	Unmodified	_LYLEQLR_			0	0	0	O43818	O43818	O43818	RRP9	U3 small nucleolar RNA-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.77146	933.528367	-0.73281	-0.00034279	-0.035727	-1.6712E-05	-0.76854	-0.0003595	467.771289829776	9.3544	0.15074	9.3544	9.31	9.4608	0	699	34	0.85560534332665	0.0224047758340703	0.85560534332665	347.760744069488	0	9.10641988802047						268	18	4	NaN	NaN	NaN	0.0054947	1	2948	92.319	63.009	1	70589			13816	235	11634	11925	13816	13816		
LYLINSPVVR	10	Unmodified	_LYLINSPVVR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.353148	1172.69174	0.85274	0.00050086	0.17608	0.00010342	1.0288	0.00060428	587.353327608743	12.13	0.15076	12.13	12.068	12.219	0	540	40	0.963152256458504	0.0262845144362098	0.963152256458504	390.312880143893	0	10.6516747108123						398	18	4	NaN	NaN	NaN	1.7248E-05	1	8685	133.68	101.55	1	153940			13817	1036	11635	11926	13817	13817		
LYLIQMIPR	9	Unmodified	_LYLIQMIPR_			0	0	0	Q9H5Q4	Q9H5Q4	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.83882	1145.66309	-0.11723	-6.7273E-05	-1.9026	-0.0010918	-2.0198	-0.0011591	573.837803285091	16.2	0.22169	16.2	16.111	16.333	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	371.54074913755	0	8.22142272267826						204	26	2	NaN	NaN	NaN	0.00030349	1	7953	92.677	71.588	1	53902			13818	2901	11636	11927	13818	13818		
LYLLNDELK	9	Unmodified	_LYLLNDELK_			0	0	0		REV__Q8TE73	REV__Q8TE73			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.816064	1119.61758	-0.6301	-0.00035337	0.21879	0.0001227	-0.41131	-0.00023067	560.816341534548	16.36	0.14191	16.36	16.307	16.448	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	369.175889182648	0	7.40491871972011						234	17	3	NaN	NaN	NaN	0.034549	1	7263	42.835	25.365	1	52797	+		13819	3505	11637	11928	13819	13819		
LYLNETFSELR	11	Unmodified	_LYLNETFSELR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.858992	1383.70343	0.97031	0.00067229	0.83399	0.00057784	1.8043	0.0012501	692.859051807545	13.655	0.13298	13.655	13.575	13.708	0	480	31	1.00353128488872	0.0201644018514301	1.00353128488872	405.954452932665	0	8.15702394691101						307	16	6	NaN	NaN	NaN	0.01229	1	14948	54.584	32.197	1	92348			13820	867	11638	11929	13820	13820		
LYLVDLAGSEK	11	Unmodified	_LYLVDLAGSEK_			0	0	0	P33176;O60282;Q12840	P33176	P33176	KIF5B;KIF5C;KIF5A	Kinesin-1 heavy chain;Kinesin heavy chain isoform 5C;Kinesin heavy chain isoform 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.332079	1206.6496	1.0971	0.000663	1.0653	0.00064379	2.1624	0.0013068	604.332794416837	12.795	0.15963	12.795	12.742	12.901	0	594	49	0.926715457081489	0.0324196809968852	0.926715457081489	375.424139331903	0	13.1336223461743						386	19	3	NaN	NaN	NaN	0.0047114	1	9651	44.82	23.546	1	135320			13821	944	11639	11930	13821	13821		
LYLVSDVLYNSSAK	14	Unmodified	_LYLVSDVLYNSSAK_			0	0	0	O15042	O15042	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.419413	1570.82427	1.299	0.0010216	0.74996	0.00058979	2.049	0.0016114	787.422584653318	14.755	0.16851	14.755	14.684	14.852	1.7764E-15	366	58	1.07994477139643	0.0380935733737338	1.07994477139643	436.350450711049	0	15.3916647879408						655	20	4	NaN	NaN	NaN	0.0061935	1	20687	47.361	32.213	1	162790			13822	140	11640	11931	13822	13822		
LYNNHEIR	8	Unmodified	_LYNNHEIR_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.772522	1057.53049	1.3556	0.00071818	-3.3405	-0.0017697	-1.9849	-0.0010515	529.770144828301	2.5523	0.23941	2.5523	2.4459	2.6853	0	645	43	0.892219381832517	0.0284341478220305	0.892219381832517	362.025061687202	0	11.5373800759082						259	28	3	NaN	NaN	NaN	0.0066737	1	5654	82.716	35.914	1	46118			13823	263	11641	11932	13823	13823		
LYNNHEIR	8	Unmodified	_LYNNHEIR_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	353.51744	1057.53049	-0.47	-0.00016615	1.6887	0.00059699	1.2187	0.00043084	353.517982767535	2.5523	0.23058	2.5523	2.5345	2.7651	0	906	25	0.714399420407021	0.0164505330115733	0.714399420407021	434.804464838891	0	10.0122774432493						239	27	3	NaN	NaN	NaN	0.028605	1	5655	29.102	12.554	1	53328			13824	263	11641	11932	13824	13824		
LYNTCAVFGPDGTLLAK	17	Unmodified	_LYNTCAVFGPDGTLLAK_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.469112	1838.92367	2.2566	0.0020772	-0.75172	-0.00069194	1.5049	0.0013852	920.468846318167	14.223	0.12415	14.223	14.178	14.302	0	273	58	1.14198628764525	0.0379365683259716	1.14198628764525	460.829940992134	0	15.3086834161115						539	15	4	NaN	NaN	NaN	6.3757E-10	1	28194	122.2	110.18	1	135430			13825	3001	11642	11933	13825	13825		
LYPAAVDTIVAIMAEGK	17	Unmodified	_LYPAAVDTIVAIMAEGK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.476405	1760.93826	1.7082	0.0015057	-3.4237	-0.003018	-1.7155	-0.0015122	881.975338785349	19.96	0.10643	19.96	19.889	19.995	0	300	58	1.12400150285141	0.0379731159015164	1.12400150285141	453.722827685823	0	15.3285111088994						342	13	4	NaN	NaN	NaN	0.00010109	1	26176	69.327	61.769	1	99627			13826	3276	11643	11934	13826	13826		
LYPEGLAQLAR	11	Unmodified	_LYPEGLAQLAR_			0	0	0	P61421	P61421	P61421	ATP6V0D1	V-type proton ATPase subunit d 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.845687	1229.67682	0.30777	0.00018954	-3.5634	-0.0021945	-3.2556	-0.002005	615.847034645696	12.032	0.17734	12.032	11.908	12.086	0	549	46	0.957085760909907	0.0303366841243174	0.957085760909907	387.645443984619	0	12.2871720243879						461	21	5	NaN	NaN	NaN	0.0083838	1	10305	39.01	31.363	1	113330			13827	1344	11644	11935	13827	13827		
LYPNMTAVLLHNTQLDQR	18	Unmodified	_LYPNMTAVLLHNTQLDQR_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.705362	2126.09426	0.56949	0.00040417	-1.1255	-0.00079879	-0.55604	-0.00039462	710.039215714341	14.365	0.097511	14.365	14.32	14.418	0	618	46	0.910492137470517	0.0304377111147065	0.910492137470517	550.562051107075	0	18.4052645516228						366	12	4	NaN	NaN	NaN	1.9507E-06	1	33698	97.084	89.508	1	98620			13828	2345	11645	11936	13828	13828		
LYQEVEIASVDAFQGR	16	Unmodified	_LYQEVEIASVDAFQGR_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.959965	1823.90538	1.6203	0.0014793	-1.3806	-0.0012604	0.23974	0.00021888	912.957784811957	13.992	0.20395	13.992	13.868	14.072	0	285	37	1.13399579921816	0.0239747667739112	1.13399579921816	457.63371874612	0	9.67522250292319						361	24	4	NaN	NaN	NaN	1.9796E-08	1	27828	104.49	89.516	1	71496			13829	2442	11646	11937	13829	13829		
LYQGINQLPNVIQALEK	17	Unmodified	_LYQGINQLPNVIQALEK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.043832	1940.07311	1.9265	0.0018707	-0.91579	-0.00088927	1.0107	0.00098146	971.544398250707	18.39	0.14184	18.39	18.293	18.435	0	183	49	1.20177511391933	0.0318304689315978	1.20177511391933	484.767416785715	0	12.8396519617766						561	17	4	NaN	NaN	NaN	2.0135E-06	1	30520	86.729	74.147	1	158980			13830	1063	11647	11938	13830	13830		
LYQHAVEYFLHAIK	14	Unmodified	_LYQHAVEYFLHAIK_			0	0	0	Q9UN37	Q9UN37	Q9UN37	VPS4A	Vacuolar protein sorting-associated protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.978752	1730.91443	0.0015424	8.9147E-07	-0.84223	-0.00048679	-0.84069	-0.0004859	578.312419854955	14.329	0.13298	14.329	14.285	14.418	0	642	40	0.894250814548268	0.0263976438859336	0.894250814548268	541.540777679708	0	15.9858960890315						261	16	3	NaN	NaN	NaN	0.044295	1	25363	36.952	34.968	1	72056			13831	3291	11648	11939	13831	13831		
LYQHEINLFK	10	Unmodified	_LYQHEINLFK_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	435.571434	1303.69247	-2.6358	-0.0011481	0.70345	0.0003064	-1.9323	-0.00084166	435.571682184394	9.2036	0.088675	9.2036	9.1681	9.2568	0	786	28	0.796423123669906	0.0184052442534667	0.796423123669906	483.550131685469	0	11.1747863892458						231	11	3	NaN	NaN	NaN	0.050132	1	12477	32.14	5.6839	1	85017			13832	1540	11649	11940	13832	13832		
LYQPEYQEVSTEEQR	15	Unmodified	_LYQPEYQEVSTEEQR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.94197	1897.86939	3.8027	0.0036123	-2.8334	-0.0026916	0.96928	0.00092076	950.440793118069	7.6956	0.1331	7.6956	7.6511	7.7842	0	285	58	1.13399579921816	0.0379522251090028	1.13399579921816	457.499101099742	0	15.3114402046947						485	16	4	NaN	NaN	NaN	1.1788E-06	1	29555	86.729	81.341	1	92142			13833	3410	11650	11941	13833	13833		
LYQPEYQEVSTEEQREEISGK	21	Unmodified	_LYQPEYQEVSTEEQREEISGK_			0	0	1	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.06964	2541.18709	2.0151	0.001709	0.27633	0.00023435	2.2914	0.0019433	848.40406386521	8.4672	0.1419	8.4672	8.3874	8.5293	0	429	163	1.03776581230406	0.108827964507968	1.03776581230406	626.857545266673	0	65.7370187753357						1670	17	4	NaN	NaN	NaN	1.7648E-07	1	36990	74.62	72.996	1	506370			13834	3410	11651	11942	13834	13834		
LYQQHGAGLFDVTR	14	Unmodified	_LYQQHGAGLFDVTR_			0	0	0	O14773	O14773	O14773	TPP1	Tripeptidyl-peptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.61084	1603.81069	-1.4246	-0.00076302	-0.70658	-0.00037845	-2.1312	-0.0011415	535.610457305904	8.9553	0.12416	8.9553	8.9109	9.0351	0	783	31	0.798467866007927	0.0204460030373547	0.798467866007927	483.840464291789	0	12.3894824371139						338	15	4	NaN	NaN	NaN	0.0006359	1	21711	66.953	60.69	1	130770			13835	118	11652	11943	13835	13835		
LYQTDPSGTYHAWK	14	Unmodified	_LYQTDPSGTYHAWK_			0	0	0	O14818;Q8TAA3	O14818	O14818	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.896637	1665.77872	3.0899	0.0025766	-1.3309	-0.0011098	1.759	0.0014668	833.894925724482	6.9239	0.20392	6.9239	6.8441	7.0481	0	375	61	1.07392668217569	0.0401233788834319	1.07392668217569	433.702646937878	0	16.2037277913438						984	24	6	NaN	NaN	NaN	1.004E-07	1	23502	140.01	115.32	1	421580			13836	121	11653	11944	13836	13836		
LYQTDPSGTYHAWK	14	Unmodified	_LYQTDPSGTYHAWK_			0	0	0	O14818;Q8TAA3	O14818	O14818	PSMA7;PSMA8	Proteasome subunit alpha type-7;Proteasome subunit alpha type-7-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.26685	1665.77872	1.1204	0.00062325	1.6514	0.00091863	2.7718	0.0015419	556.267586177435	6.9151	0.31928	6.9151	6.8264	7.1457	0	648	79	0.890187667287968	0.0528063050050341	0.890187667287968	539.247445435806	0	31.9883841613108						939	37	6	NaN	NaN	NaN	0.00015763	1	23504	78.043	75.741	1	444600			13837	121	11653	11944	13837	13837		
LYSEDELPAEFK	12	Unmodified	_LYSEDELPAEFK_			0	0	0	Q9Y6A4	Q9Y6A4	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.84829	1439.68203	1.7042	0.0012285	0.33254	0.00023971	2.0368	0.0014682	721.348793094773	11.367	0.15081	11.367	11.296	11.447	0	459	40	1.01763759082241	0.0261865738228477	1.01763759082241	411.502427408798	0	10.5890729576066						346	18	3	NaN	NaN	NaN	1.8147E-07	1	16664	113.46	85.363	1	85973			13838	3456	11654	11945	13838	13838		
LYSENEGMASNQGK	14	Unmodified	_LYSENEGMASNQGK_			0	0	0	Q96EI5	Q96EI5	Q96EI5	TCEAL4	Transcription elongation factor A protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.340837	1526.66712	3.3076	0.0025281	-0.082274	-6.2886E-05	3.2253	0.0024652	764.340737328133	3.8914	0.079812	3.8914	3.8736	3.9534	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	406.392914706022	0	8.14721031818078						172	10	3	NaN	NaN	NaN	7.8039E-05	1	19305	78.864	77.714	1	30538			13839	2511	11655	11946	13839	13839		
LYSESLAR	8	Unmodified	_LYSESLAR_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.750724	937.486896	0.77377	0.00036348	0.031694	1.4888E-05	0.80547	0.00037837	469.75073581114	4.9642	0.19505	4.9642	4.8755	5.0706	0	711	61	0.847456455381371	0.0407727738696773	0.847456455381371	344.427531090551	0	16.5710766027814						427	23	3	NaN	NaN	NaN	0.0022177	1	3029	100.75	60.993	1	240910			13840	1161;920	11656	11947	13840	13840		
LYSILGTTLK	10	Unmodified	_LYSILGTTLK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.834257	1107.65396	0.26809	0.00014875	-0.3872	-0.00021483	-0.11911	-6.6086E-05	554.833930208739	13.212	0.15963	13.212	13.159	13.318	0	624	46	0.906433495720521	0.0304419315193813	0.906433495720521	367.57851363975	0	12.3448658870693						536	19	4	NaN	NaN	NaN	0.00058548	1	6936	81.163	61.676	1	327810			13841	300	11657	11948	13841	13841		
LYSILQGDSPTK	12	Unmodified	_LYSILQGDSPTK_			0	0	0	O15042	O15042	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.353542	1320.69253	1.6088	0.001064	-1.5648	-0.0010349	0.04401	2.9106E-05	661.352364799869	9.8686	0.18617	9.8686	9.7889	9.975	0	507	34	0.985374541851584	0.0222038520438094	0.985374541851584	398.797679069581	0	8.98627302146116						411	22	4	NaN	NaN	NaN	5.4335E-05	1	13006	87.942	64.367	1	164900			13842	140	11658	11949	13842	13842		
LYSLALHPNAFK	12	Unmodified	_LYSLALHPNAFK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.382437	1372.75032	1.9061	0.0013102	0.41856	0.00028771	2.3246	0.0015979	687.383049240029	10.507	0.11533	10.507	10.454	10.569	0	411	31	1.04982941439551	0.0201004566486325	1.04982941439551	424.716771482347	0	8.13179830557863						240	14	4	NaN	NaN	NaN	0.00019869	1	14592	83.358	67.776	1	64784			13843	1465	11659	11950	13843	13843		
LYSLDPEQK	9	Unmodified	_LYSLDPEQK_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.782222	1091.54989	0.82649	0.00045191	0.57983	0.00031704	1.4063	0.00076895	546.783754097411	7.2077	0.31045	7.2077	7.0481	7.3585	0	642	37	0.894250814548268	0.0243721251806781	0.894250814548268	362.703908501359	0	9.88521890917349						446	36	3	NaN	NaN	NaN	0.010654	1	6495	62.969	36.512	1	146790			13844	61	11660	11951	13844	13844		
LYSLFLK	7	Unmodified	_LYSLFLK_			0	0	0	Q9P2R7	Q9P2R7	Q9P2R7	SUCLA2	Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.268022	882.521491	-2.1879	-0.00096764	0.066462	2.9394E-05	-2.1214	-0.00093824	442.267943487838	13.008	0.088682	13.008	12.972	13.061	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	334.781507148883	0	8.30336733765705						138	11	2	NaN	NaN	NaN	0.0079722	1	2046	61.494	41.147	1	30478			13845	3164	11661	11952	13845	13845		
LYSLSVLYK	9	Unmodified	_LYSLSVLYK_			0	0	0	O15498	O15498	O15498	YKT6	Synaptobrevin homolog YKT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.3157	1084.61685	0.79145	0.00043001	-2.1745	-0.0011814	-1.3831	-0.00075144	543.315022913788	12.813	0.097531	12.813	12.76	12.857	0	645	43	0.892219381832517	0.0284380921957725	0.892219381832517	361.908814853361	0	11.5352753513649						260	12	3	NaN	NaN	NaN	0.004796	1	6335	62.88	26.311	1	69708			13846	178	11662	11953	13846	13846		
LYSPSQIGAFVLMK	14	Unmodified	_LYSPSQIGAFVLMK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.618055	1552.83234	-1.1167	-0.00057913	-0.64593	-0.00033499	-1.7626	-0.00091412	518.61816504671	17.105	0.11526	17.105	17.034	17.149	0	687	19	0.863749705078866	0.0122131503988969	0.863749705078866	523.545627691304	0	7.40277125894363						197	14	3	NaN	NaN	NaN	0.051578	1	20155	31.425	28.546	1	39266			13847	1007	11663	11954	13847	13847		
LYSPSQIGAFVLMK	14	Unmodified	_LYSPSQIGAFVLMK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.423445	1552.83234	1.1724	0.00091145	2.4095	0.0018732	3.5819	0.0027847	777.426698421785	17.105	0.39901	17.105	16.954	17.353	0	399	100	1.0578662689527	0.0663178577369796	1.0578662689527	427.47292377613	0	26.7983670312715						2146	46	5	NaN	NaN	NaN	3.8203E-06	1	20157	92.445	72.262	1	2405600			13848	1007	11663	11954	13848	13848		
LYSPSQIGAFVLMK	14	Oxidation (M)	_LYSPSQIGAFVLM(Oxidation (M))K_	LYSPSQIGAFVLM(1)K	LYSPSQIGAFVLM(150)K	0	1	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.420902	1568.82725	1.6743	0.001315	-0.13315	-0.00010458	1.5411	0.0012104	785.420846324676	15.757	0.33694	15.757	15.606	15.943	0	381	70	1.06991323971056	0.0461705299793509	1.06991323971056	432.302033700801	0	18.6553575246126						1379	39	5	NaN	NaN	NaN	2.3811E-08	1	20639	150.21	120.45	1	959410			13849	1007	11663	11955	13849	13849	361	
LYSSIDHESSTWIIK	15	Unmodified	_LYSSIDHESSTWIIK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.636832	1777.88867	0.51513	0.0003058	-2.9465	-0.0017491	-2.4313	-0.0014433	593.96968318543	11.012	0.133	11.012	10.924	11.057	0	660	52	0.882057989648486	0.0345583335678743	0.882057989648486	534.045035786397	0	20.9234616131401						330	16	3	NaN	NaN	NaN	0.048907	1	26618	32.759	17.143	1	84588			13850	2614	11664	11956	13850	13850		
LYSSIDHESSTWIIK	15	Unmodified	_LYSSIDHESSTWIIK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.636832	1777.88867	-0.28397	-0.00016858	-1.3387	-0.0007947	-1.6227	-0.00096327	593.970354003759	11.012	0.088662	11.012	10.977	11.066	0	717	40	0.84338031290707	0.0264967721372047	0.84338031290707	510.627497360226	0	16.0425613895446						260	11	4	NaN	NaN	NaN	0.00054401	1	26619	55.578	45.328	1	65618			13851	2614	11664	11956	13851	13851		
LYTDFDEIRQEIENETER	18	Unmodified	_LYTDFDEIRQEIENETER_			0	0	1	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.360755	2299.06043	0.048733	3.7396E-05	-1.5886	-0.001219	-1.5398	-0.0011816	767.693943357358	16.351	0.12416	16.351	16.307	16.431	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	556.42292983389	0	14.705809229626						437	15	5	NaN	NaN	NaN	3.738E-07	1	35634	57.042	54.941	1	146490			13852	79	11665	11957	13852	13852		
LYTGPGLAIHCMQVHK	16	Unmodified	_LYTGPGLAIHCMQVHK_			0	0	0	O43670	O43670	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.97977	1823.91748	-0.22859	-0.00013921	0.96833	0.00058969	0.73973	0.00045048	609.314791433546	8.618	0.088658	8.618	8.5648	8.6534	0	702	22	0.853568545818287	0.0142575833837986	0.853568545818287	516.695160355413	0	8.63061832451922						184	11	4	NaN	NaN	NaN	0.0011926	1	27830	66.664	47.108	1	39038			13853	216	11666	11958	13853	13853		
LYTLQDK	7	Unmodified	_LYTLQDK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.742368	879.470183	-1.2844	-0.00056609	-1.2396	-0.00054633	-2.524	-0.0011124	440.74128261707	5.1681	0.38128	5.1681	5.1149	5.4962	0	762	61	0.812773098473386	0.0408749536266203	0.812773098473386	330.645953130622	0	16.628426834536						606	44	3	NaN	NaN	NaN	0.022887	1	2001	66.087	45.428	1	234580			13854	1127	11667	11959	13854	13854		
LYTLVLTDPDAPSR	14	Unmodified	_LYTLVLTDPDAPSR_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.917038	1559.81952	1.9065	0.0014888	1.7267	0.0013484	3.6332	0.0028372	780.918846738869	13.203	0.34589	13.203	13.088	13.434	0	381	52	1.06991323971056	0.034116624349938	1.06991323971056	432.323868165349	0	13.7856327599978						1582	40	6	NaN	NaN	NaN	7.2523E-33	1	20345	236.42	218.95	1	1819000			13855	903	11668	11960	13855	13855		
LYTLVLTDPDAPSRK	15	Unmodified	_LYTLVLTDPDAPSRK_			0	0	1	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.645438	1687.91449	-0.077604	-4.3741E-05	-0.36786	-0.00020734	-0.44546	-0.00025108	563.645225298875	10.631	0.15073	10.631	10.578	10.729	0	708	46	0.849494101904619	0.030573200685858	0.849494101904619	514.540972373857	0	18.5182738458245						478	18	4	NaN	NaN	NaN	3.919E-05	1	24154	74.524	60.069	1	130890			13856	903	11669	11961	13856	13856		
LYTLVLTDPDAPSRK	15	Unmodified	_LYTLVLTDPDAPSRK_			0	0	1	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.964519	1687.91449	1.9935	0.0016844	0.62557	0.00052858	2.619	0.002213	845.46669811238	10.631	0.079778	10.631	10.596	10.676	0	273	28	1.14198628764525	0.0179748912036308	1.14198628764525	461.138445157662	0	7.25833004406036						135	10	3	NaN	NaN	NaN	2.0283E-05	1	24155	90.306	78.824	1	25209			13857	903	11669	11961	13857	13857		
LYTLVTYVPVTTFK	14	Unmodified	_LYTLVTYVPVTTFK_			0	0	0	P62899	P62899	P62899	RPL31	60S ribosomal protein L31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.966	1643.91745	2.0734	0.0017063	1.3676	0.0011255	3.441	0.0028318	822.967239705331	16.644	0.24827	16.644	16.573	16.821	0	327	136	1.10599442759226	0.0899488801935375	1.10599442759226	446.702113978516	0	36.3296178805583						2503	29	6	NaN	NaN	NaN	1.8845E-11	1	22868	127.03	97.273	1	4400600			13858	1412	11670	11962	13858	13858		
LYTTMPVAK	9	Unmodified	_LYTTMPVAK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.280803	1022.54705	0.36229	0.0001856	-1.1705	-0.00059961	-0.80817	-0.00041401	512.280271677598	6.8175	0.097521	6.8175	6.7821	6.8796	0	693	37	0.85967808974117	0.024426303976944	0.85967808974117	348.974526836126	0	9.91552300149453						130	12	2	NaN	NaN	NaN	0.044796	1	4806	20.234	10.155	1	56333			13859	3329	11671	11963	13859	13859		
LYTVDLESGLHYLLR	15	Unmodified	_LYTVDLESGLHYLLR_			0	0	0	Q6ZRP7	Q6ZRP7	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.992838	1790.95669	-0.71674	-0.0004286	0.60629	0.00036256	-0.11045	-6.6048E-05	598.327411963378	17.947	0.062059	17.947	17.912	17.974	0	591	19	0.928742107665821	0.0121590616453449	0.928742107665821	562.278362443433	0	7.36133014144912						104	8	3	NaN	NaN	NaN	0.0026213	1	27002	42.061	37.533	1	23025			13860	2099	11672	11964	13860	13860		
LYTWVEWVK	9	Unmodified	_LYTWVEWVK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.326599	1222.63865	0.63422	0.00038835	-1.4613	-0.0008948	-0.8271	-0.00050645	612.325718596521	15.783	0.3015	15.783	15.695	15.996	0	576	52	0.938871150116794	0.034438755237733	0.938871150116794	380.292327539519	0	13.9495120126888						601	35	3	NaN	NaN	NaN	0.010996	1	10096	49.96	26.385	1	303740			13861	3161	11673	11965	13861	13861		
LYVGSLHFNITEDMLR	16	Unmodified	_LYVGSLHFNITEDMLR_			0	0	0	Q14498;Q86U06	Q14498	Q14498	RBM39;RBM23	RNA-binding protein 39;Probable RNA-binding protein 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.660983	1906.96112	-1.3059	-0.00083141	-0.7557	-0.00048113	-2.0616	-0.0013125	636.995145207236	16.369	0.15075	16.369	16.324	16.475	0	711	28	0.847456455381371	0.018341368585978	0.847456455381371	512.826855393968	0	11.0990320692476						357	18	5	NaN	NaN	NaN	3.433E-05	1	29746	81.48	74.733	1	108300			13862	1753	11674	11966	13862	13862		
LYVGSLHFNITEDMLR	16	Unmodified	_LYVGSLHFNITEDMLR_			0	0	0	Q14498;Q86U06	Q14498	Q14498	RBM39;RBM23	RNA-binding protein 39;Probable RNA-binding protein 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.487836	1906.96112	0.66513	0.00063486	1.6898	0.0016129	2.3549	0.0022477	954.489533489328	16.369	0.070924	16.369	16.342	16.413	0	171	31	1.20972836110953	0.0198776635699456	1.20972836110953	488.035731126087	0	8.01916395887355						149	9	3	NaN	NaN	NaN	0.053855	1	29751	26.517	21.7	1	27802			13863	1753	11674	11966	13863	13863		
LYVHEAVK	8	Unmodified	_LYVHEAVK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.77146	957.528367	1.2898	0.00061881	0.67558	0.00032412	1.9654	0.00094293	479.7718460063	3.2617	0.16847	3.2617	3.2351	3.4035	0	675	25	0.871889544407995	0.0162751600009597	0.871889544407995	354.250582743872	0	6.61263224403547						206	20	3	NaN	NaN	NaN	0.0074192	1	3391	85.813	63.426	1	49482			13864	1816	11675	11967	13864	13864		
LYVTYFGGDEAAGLEADLECK	21	Unmodified	_LYVTYFGGDEAAGLEADLECK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.03574	2320.05693	-0.11724	-0.00013611	0.80959	0.00093996	0.69235	0.00080384	1161.5381157453	16.936	0.43455	16.936	16.847	17.282	0	81	82	1.2692388538616	0.0534970810193605	1.2692388538616	511.384678677996	0	21.5543256527816						1273	50	5	NaN	NaN	NaN	2.848E-08	1	35812	96.27	92.511	1	229860			13865	1136	11676	11968	13865	13865		
LYVYNTDTDNCR	12	Unmodified	_LYVYNTDTDNCR_			0	0	0	Q9H8Y8	Q9H8Y8	Q9H8Y8	GORASP2	Golgi reassembly-stacking protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.335555	1532.65656	2.1912	0.0016814	1.3612	0.0010445	3.5524	0.0027259	767.33598801759	6.3387	0.1951	6.3387	6.2855	6.4806	0	432	37	1.035754240522	0.0241405316442127	1.035754240522	418.586370902917	0	9.75607642940992						392	23	5	NaN	NaN	NaN	1.7058E-08	1	19501	151.22	136.46	1	125610			13866	2928	11677	11969	13866	13866		
LYYDTDYGSK	10	Unmodified	_LYYDTDYGSK_			0	0	0	Q9NQZ2	Q9NQZ2	Q9NQZ2	UTP3	Something about silencing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.774593	1223.53463	1.242	0.00076105	1.5847	0.00097109	2.8267	0.0017321	612.775750885134	6.3919	0.11526	6.3919	6.3476	6.4629	0	558	28	0.951016745717027	0.0182120890547127	0.951016745717027	385.20877213921	0	7.37679593387861						150	14	2	NaN	NaN	NaN	0.0014208	1	10111	44.82	31.173	1	48175			13867	3007	11678	11970	13867	13867		
LYYHVLGTDQSEDILCAEFPDEPK	24	Unmodified	_LYYHVLGTDQSEDILCAEFPDEPK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	947.109219	2838.30583	1.8068	0.0017113	-1.0704	-0.0010138	0.73639	0.00069744	947.442600061164	15.508	0.079802	15.508	15.464	15.544	-1.7764E-15	387	46	1.06589869032374	0.0301278201847186	1.06589869032374	643.484352972352	0	18.1882021753331						245	10	4	NaN	NaN	NaN	4.2906E-05	1	37975	32.862	32.347	1	41731			13868	1105	11679	11971	13868	13868		
MAADDVEEYMIERPEPEFQDLNEK	24	Unmodified	_MAADDVEEYMIERPEPEFQDLNEK_			0	0	1	Q9BUL8	Q9BUL8	Q9BUL8	PDCD10	Programmed cell death protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	966.765123	2897.27354	1.7455	0.0016875	-0.056279	-5.4409E-05	1.6893	0.0016331	967.09919801561	14.56	0.088649	14.56	14.515	14.604	-1.7764E-15	447	40	1.02569221487577	0.026172110670738	1.02569221487577	619.150191997709	0	15.7985671644542						368	11	5	NaN	NaN	NaN	5.3953E-10	1	38067	69.94	69.836	1	86539			13869	2747	11680	11972	13869	13869		
MAAQIIGNMYSLTDQK	16	Unmodified	_MAAQIIGNMYSLTDQK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.295423	1782.86444	-0.36	-0.00021431	-0.30594	-0.00018213	-0.66594	-0.00039643	595.295026558691	14.356	0.070918	14.356	14.329	14.4	0	666	22	0.877991458330206	0.0142358237480561	0.877991458330206	531.571461297989	0	8.61894220124498						140	9	3	NaN	NaN	NaN	0.0023184	1	26755	66.953	60.577	1	33853			13870	2420	11681	11973	13870	13870		
MAAQIIGNMYSLTDQK	16	Unmodified	_MAAQIIGNMYSLTDQK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.439497	1782.86444	2.2991	0.0020518	1.1656	0.0010402	3.4647	0.003092	892.440247065152	14.356	0.17733	14.356	14.276	14.453	0	285	43	1.13399579921816	0.0279782603553778	1.13399579921816	457.713203145142	0	11.2928276934693						510	21	4	NaN	NaN	NaN	0.025062	1	26757	52.863	48.047	1	189380			13871	2420	11681	11973	13871	13871		
MACGAEFSMIMDCK	14	Unmodified	_MACGAEFSMIMDCK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.826282	1649.63801	1.6084	0.0013283	-0.56366	-0.00046549	1.0448	0.00086279	825.826926183863	13.23	0.15074	13.23	13.185	13.336	0	378	31	1.07192009927972	0.020067214614357	1.07192009927972	432.927230878674	0	8.10474928148034						333	18	4	NaN	NaN	NaN	8.6298E-05	1	23012	64.266	62.129	1	62269			13872	3151	11682	11974	13872	13872		
MADCGGLPQISQPAK	15	Unmodified	_MADCGGLPQISQPAK_			0	0	0	Q92597	Q92597	Q92597	NDRG1	Protein NDRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.879075	1571.7436	2.212	0.0017406	-0.1894	-0.00014904	2.0226	0.0015916	787.380944248412	8.485	0.2572	8.485	8.3164	8.5736	0	405	79	1.05384839605172	0.0522900806407443	1.05384839605172	425.804067228513	0	21.1276395124324						939	30	4	NaN	NaN	NaN	0.00011948	1	20707	76.563	68.089	1	220600			13873	2414	11683	11975	13873	13873		
MADCGGLPQVVQPGK	15	Unmodified	_MADCGGLPQVVQPGK_			0	0	0	Q9UGV2	Q9UGV2	Q9UGV2	NDRG3	Protein NDRG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.881618	1555.74868	2.0344	0.0015845	-2.1383	-0.0016655	-0.10392	-8.0944E-05	778.879958154025	9.0883	0.29265	9.0883	8.9109	9.2036	0	426	46	1.03977710643793	0.030165256192159	1.03977710643793	420.156334685995	0	12.1892696021945						866	34	4	NaN	NaN	NaN	4.5684E-06	1	20227	92.707	84.233	1	246260			13874	3206	11684	11976	13874	13874		
MADEAILQER	10	Unmodified	_MADEAILQER_			0	0	0	Q9HCD5	Q9HCD5	Q9HCD5	NCOA5	Nuclear receptor coactivator 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.289888	1174.56522	1.0594	0.00062321	4.3344	0.0025499	5.3937	0.0031731	588.293229332997	7.5092	0.15959	7.5092	7.4294	7.589	0	618	43	0.910492137470517	0.0284026223535851	0.910492137470517	368.965756827232	0	11.5098138921688						421	19	4	NaN	NaN	NaN	0.0038676	1	8717	64.064	48.185	1	143600			13875	2961	11685	11977	13875	13875		
MADFWLTEK	9	Unmodified	_MADFWLTEK_			0	0	0	Q9NRX2	Q9NRX2	Q9NRX2	MRPL17	39S ribosomal protein L17, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.773342	1139.53213	0.73578	0.00041997	-4.0581	-0.0023162	-3.3223	-0.0018963	570.772784065317	12.963	0.15961	12.963	12.919	13.079	0	636	34	0.898312834727904	0.0223395647977513	0.898312834727904	364.1601593985	0	9.05606506235262						341	19	4	NaN	NaN	NaN	0.0032423	1	7772	72.038	66.29	1	96874			13876	3029	11686	11978	13876	13876		
MADGVANVEHILK	13	Unmodified	_MADGVANVEHILK_			0	0	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.866294	1395.71803	1.4508	0.0010139	0.66654	0.00046582	2.1174	0.0014798	698.866898822574	10.197	0.088667	10.197	10.161	10.25	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.770816391217	0	7.30682693496317						183	11	4	NaN	NaN	NaN	0.00052492	1	15321	48.701	47.057	1	46200			13877	2848	11687	11979	13877	13877		
MADLSELLK	9	Unmodified	_MADLSELLK_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.275718	1018.53688	-0.56141	-0.00028648	-1.0842	-0.00055326	-1.6457	-0.00083974	510.275337490487	14.196	0.23939	14.196	14.125	14.365	0	723	67	0.839303037468863	0.0448251357627677	0.839303037468863	340.721368112946	0	18.1971003333887						714	28	4	NaN	NaN	NaN	0.0016315	1	4708	96.311	83.484	1	328490			13878	910	11688	11980	13878	13878		
MAEDEAETIGNLIEECGGLEK	21	Unmodified	_MAEDEAETIGNLIEECGGLEK_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.015491	2307.02464	-0.10894	-8.3883E-05	-0.74368	-0.00057265	-0.85262	-0.00065653	770.349631918203	16.936	0.10642	16.936	16.892	16.998	0	507	28	0.985374541851584	0.0181692995022645	0.985374541851584	595.53930320202	0	10.9811361118736						300	13	5	NaN	NaN	NaN	8.9703E-06	1	35687	77.431	70.75	1	76418			13879	96	11689	11981	13879	13879		
MAEDEAETIGNLIEECGGLEK	21	Unmodified	_MAEDEAETIGNLIEECGGLEK_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1154.5196	2307.02464	-0.45847	-0.00052931	0.26738	0.0003087	-0.19108	-0.00022061	1155.0203409255	16.936	0.097556	16.936	16.901	16.998	0	81	79	1.2692388538616	0.0514980648775307	1.2692388538616	511.401882447024	0	20.7496069322345						384	12	2	NaN	NaN	NaN	5.8038E-08	1	35688	98.895	95.821	1	151220			13880	96	11689	11981	13880	13880		
MAEDELFNRYER	12	Unmodified	_MAEDELFNRYER_			0	0	1	P57740	P57740	P57740	NUP107	Nuclear pore complex protein Nup107	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.908557	1571.70384	-1.4889	-0.00078154	0.23688	0.00012434	-1.252	-0.0006572	524.908715057508	8.8221	0.079806	8.8221	8.7955	8.8753	0	777	25	0.802556497112065	0.0163522499663766	0.802556497112065	486.402956022644	0	9.91055801041767						184	10	4	NaN	NaN	NaN	0.0074095	1	20698	36.24	27.767	1	43289			13881	1297	11690	11982	13881	13881		
MAEIGEHVAPSEAANSLEQAQAAAER	26	Unmodified	_MAEIGEHVAPSEAANSLEQAQAAAER_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	894.092562	2679.25586	1.7664	0.0015793	1.755	0.0015692	3.5214	0.0031485	894.428757456237	11.216	0.14188	11.216	11.163	11.305	0	468	28	1.01159370163332	0.0181366797500251	1.01159370163332	610.877101337268	0	10.9523046018268						444	17	6	NaN	NaN	NaN	8.0314E-26	1	37542	231.82	219.44	1	149620			13882	867	11691	11983	13882	13882		
MAENLGFVGPLK	12	Unmodified	_MAENLGFVGPLK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.341923	1274.66929	1.0244	0.00065389	-5.2958	-0.0033806	-4.2715	-0.0027267	638.338165833339	12.653	0.31924	12.653	12.485	12.804	0	555	46	0.953040030838688	0.0303492849683255	0.953040030838688	385.855533569527	0	12.2874582032001						673	37	4	NaN	NaN	NaN	0.045063	1	11626	31.425	0	1	210860			13883	2557	11692	11984	13883	13883		
MAGATPVFIPLR	12	Unmodified	_MAGATPVFIPLR_			0	0	0	Q6YP21	Q6YP21	Q6YP21	CCBL2	Kynurenine--oxoglutarate transaminase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.860283	1271.70601	1.2367	0.00078763	-2.7123	-0.0017274	-1.4756	-0.00093974	636.859195255741	13.832	0.097531	13.832	13.788	13.886	0	570	31	0.942920803299286	0.0202454642733264	0.942920803299286	381.768105013117	0	8.1969477221146						227	12	3	NaN	NaN	NaN	0.00032547	1	11551	65.404	55.316	1	64964			13884	2098	11693	11985	13884	13884		
MAGNEYVGFSNATFQSER	18	Unmodified	_MAGNEYVGFSNATFQSER_			0	0	0	O94925	O94925	O94925	GLS	Glutaminase kidney isoform, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.4469	2006.87924	1.9653	0.001974	-2.4657	-0.0024767	-0.50047	-0.00050269	1004.44411680922	11.287	0.10645	11.287	11.252	11.358	0	240	31	1.16393748060522	0.0199432886001865	1.16393748060522	469.393603754106	0	8.04274478890574						198	13	4	NaN	NaN	NaN	0.00011841	1	31742	62.711	61.236	1	38946			13885	397	11694	11986	13885	13885		
MAHAMNEYPDSCAVLVR	17	Unmodified	_MAHAMNEYPDSCAVLVR_			0	0	0	Q96GX9	Q96GX9	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.298951	1962.87502	0.37148	0.00024343	1.6594	0.0010874	2.0309	0.0013309	655.300670896513	8.4938	0.05323	8.4938	8.4672	8.5205	0	639	25	0.896281965493857	0.0162480818907916	0.896281965493857	542.261443176879	0	9.83028630962349						118	7	4	NaN	NaN	NaN	2.568E-05	1	30970	78.864	77.495	1	20157			13886	2547	11695	11987	13886	13886		
MAILQIMK	8	Unmodified	_MAILQIMK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.274467	946.53438	-0.83355	-0.00039533	-1.7403	-0.00082538	-2.5738	-0.0012207	474.27400578922	13.141	0.18622	13.141	13.079	13.265	0	729	61	0.835224628594324	0.0408011186688414	0.835224628594324	339.409341897815	0	16.58030709582						533	22	4	NaN	NaN	NaN	0.0097008	1	3184	69.093	47.165	1	302830			13887	1648	11696	11988	13887	13887		
MALELLTQEFGIPIER	16	Unmodified	_MALELLTQEFGIPIER_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.500412	1858.98627	1.6242	0.0015113	-0.67074	-0.00062412	0.95345	0.00088718	931.001488106373	19.871	0.13302	19.871	19.845	19.978	0	252	64	1.15595906938629	0.041918364642191	1.15595906938629	466.430739551571	0	16.9141056449602						602	16	6	NaN	NaN	NaN	1.7071E-33	1	28681	219.16	167.71	1	379070			13888	1136	11697	11989	13888	13888		
MALELLTQEFGIPIER	16	Oxidation (M)	_M(Oxidation (M))ALELLTQEFGIPIER_	M(1)ALELLTQEFGIPIER	M(110)ALELLTQEFGIPIER	0	1	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.497869	1874.98119	1.4287	0.0013408	-0.99217	-0.00093114	0.43654	0.00040969	938.998215817073	18.976	0.19505	18.976	18.878	19.073	0	246	76	1.1599488233373	0.0498479746966392	1.1599488233373	468.011036251391	0	20.1124410176011						811	23	5	NaN	NaN	NaN	3.8469E-06	1	29044	106.97	96.721	1	215950			13889	1136	11697	11990	13889	13889	410	
MALIGLGVSHPVLK	14	Unmodified	_MALIGLGVSHPVLK_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.95489	1433.84284	-0.2132	-0.00010211	-0.63285	-0.00030311	-0.84605	-0.00040522	478.954620040553	12.361	0.13303	12.361	12.325	12.458	0	690	37	0.86171403876517	0.024433089026624	0.86171403876517	522.694114192391	0	14.8204987399948						442	16	5	NaN	NaN	NaN	0.0018421	1	16510	57.293	42.145	1	244510			13890	811	11698	11991	13890	13890		
MALIGLGVSHPVLK	14	Unmodified	_MALIGLGVSHPVLK_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.928697	1433.84284	2.1859	0.0015693	1.1698	0.00083981	3.3556	0.0024091	717.929562359368	12.369	0.14185	12.369	12.325	12.467	0	327	43	1.10599442759226	0.0280283709863309	1.10599442759226	447.248638045164	0	11.3342802074972						493	17	5	NaN	NaN	NaN	8.3192E-09	1	16511	175.64	141.91	1	232680			13891	811	11698	11991	13891	13891		
MALLVQELSSHR	12	Unmodified	_MALLVQELSSHR_			0	0	0	Q9HD15	Q9HD15	Q9HD15	SRA1	Steroid receptor RNA activator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.918616	1382.73402	-1.4674	-0.00067782	-1.1417	-0.00052737	-2.6091	-0.0012052	461.918349052835	11.447	0.17737	11.447	11.358	11.536	0	762	28	0.812773098473386	0.018384767783428	0.812773098473386	493.18159879828	0	11.1556708581971						282	21	4	NaN	NaN	NaN	0.0045147	1	14918	65.933	56.418	1	75805			13892	2968	11699	11992	13892	13892		
MALNHPYFNDLDNQIK	16	Unmodified	_MALNHPYFNDLDNQIK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.967268	1931.91998	2.3156	0.0022391	-1.8511	-0.0017899	0.46453	0.00044919	967.466564702482	11.367	0.097574	11.367	11.323	11.42	0	240	40	1.16393748060522	0.0259244956409976	1.16393748060522	469.518693381015	0	10.4576367053614						292	12	4	NaN	NaN	NaN	0.046688	1	30357	39.166	35.661	1	58612			13893	540	11700	11993	13893	13893		
MALNHPYFNDLDNQIK	16	Unmodified	_MALNHPYFNDLDNQIK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.980604	1931.91998	1.0731	0.00069215	-0.31291	-0.00020182	0.76022	0.00049033	645.31492790236	11.358	0.16853	11.358	11.314	11.483	0	636	112	0.898312834727904	0.0751110281798976	0.898312834727904	543.5512258533	0	45.4481889426096						1315	20	5	NaN	NaN	NaN	0.00013316	1	30358	79.795	72.219	1	527630			13894	540	11700	11993	13894	13894		
MALNHPYFNDLDNQIK	16	Oxidation (M)	_M(Oxidation (M))ALNHPYFNDLDNQIK_	M(1)ALNHPYFNDLDNQIK	M(56)ALNHPYFNDLDNQIK	0	1	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.312242	1947.9149	0.48169	0.00031325	1.8396	0.0011963	2.3213	0.0015096	650.648144186386	9.9839	0.070917	9.9839	9.9573	10.028	0	630	37	0.902373728295776	0.0243619867259138	0.902373728295776	545.976440401863	0	14.7400909142738						191	9	3	NaN	NaN	NaN	0.0034422	1	30677	55.604	54.509	1	36801			13895	540	11700	11994	13895	13895	106	
MALVLEALPQIAAK	14	Unmodified	_MALVLEALPQIAAK_			0	0	0	Q14254	Q14254	Q14254	FLOT2	Flotillin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.433812	1466.85307	0.32587	0.00023933	1.3586	0.00099782	1.6845	0.0012372	734.434819614709	17.273	0.11527	17.273	17.22	17.335	0	366	40	1.07994477139643	0.0260783915787524	1.07994477139643	436.620604883821	0	10.5434679690044						298	14	3	NaN	NaN	NaN	0.00064241	1	17493	37.749	32.362	1	63394			13896	1743	11701	11995	13896	13896		
MAPVITEETTLQLEDIIK	18	Unmodified	_MAPVITEETTLQLEDIIK_			0	0	0	O00566	O00566	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.54776	2043.08096	0.56356	0.00057627	0.15847	0.00016204	0.72203	0.00073831	1022.54735197573	18.585	0.10641	18.585	18.568	18.674	0	141	58	1.2295923935727	0.0377390848180976	1.2295923935727	495.810595067787	0	15.2175942196639						171	13	3	NaN	NaN	NaN	0.0020412	1	32409	51.829	49.114	1	29070			13897	91	11703	11996	13897	13897		
MAPVPLDDSNRPASLTK	17	Unmodified	_MAPVPLDDSNRPASLTK_			0	0	1	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.648854	1810.92473	-0.68396	-0.00041356	0.93024	0.00056247	0.24627	0.00014891	604.983685924084	7.9615	0.097603	7.9615	7.9261	8.0237	0	747	49	0.822982596624503	0.0326454272618066	0.822982596624503	498.207349673192	0	19.7624978483894						327	12	4	NaN	NaN	NaN	0.05287	1	27502	37.146	33.296	1	66053			13898	3113	11704	11997	13898	13898		
MAPYQGPDAVPGALDYK	17	Unmodified	_MAPYQGPDAVPGALDYK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.932362	1791.85017	2.6917	0.0024143	3.6849	0.0033051	6.3766	0.0057194	897.437029953706	11.376	0.22174	11.376	11.305	11.527	0	309	82	1.11800162319566	0.0539989629372133	1.11800162319566	451.240021947037	0	21.7946850124036						1854	26	6	NaN	NaN	NaN	7.4984E-05	1	27013	97.084	82.109	1	901890			13899	221	11705	11998	13899	13899		
MAQALEELR	9	Unmodified	_MAQALEELR_			0	0	0	Q03252	Q03252	Q03252	LMNB2	Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.776416	1059.53828	0.70007	0.00037158	1.9475	0.0010337	2.6476	0.0014053	530.777653280616	7.9793	0.19523	7.9793	7.9261	8.1213	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.542782964003	0	9.07052278590629						236	23	2	NaN	NaN	NaN	0.0065529	1	5713	62.969	33.867	1	75770			13900	1537	11706	11999	13900	13900		
MAQELYMEQK	10	Unmodified	_MAQELYMEQK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.793949	1269.57334	1.7729	0.0011272	0.63817	0.00040574	2.4111	0.001533	635.794564195864	6.5072	0.23946	6.5072	6.4185	6.658	0	546	55	0.959108205975751	0.0363914316100816	0.959108205975751	388.329025691424	0	14.7343637481259						847	28	5	NaN	NaN	NaN	0.00097445	1	11491	83.358	70.762	1	341120			13901	1280	11707	12000	13901	13901		
MAQEVLTHLK	10	Unmodified	_MAQEVLTHLK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.549753	1168.62743	-1.3094	-0.00051138	-1.1099	-0.00043345	-2.4192	-0.00094483	390.549372816355	6.6313	0.1862	6.6313	6.5959	6.7821	0	870	31	0.739054571787983	0.0205287711965919	0.739054571787983	449.261193137118	0	12.4791599882905						334	22	4	NaN	NaN	NaN	0.066509	1	8571	18.336	17.544	1	119550			13902	135	11708	12001	13902	13902		
MAQEVLTHLK	10	Unmodified	_MAQEVLTHLK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.320991	1168.62743	1.491	0.00087272	1.7307	0.001013	3.2217	0.0018857	585.32208888994	6.6313	0.17736	6.6313	6.587	6.7644	0	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	387.050403481804	0	10.65800435274						490	21	4	NaN	NaN	NaN	0.00020549	1	8574	99.855	87.788	1	238890			13903	135	11708	12001	13903	13903		
MAQFDAK	7	Unmodified	_MAQFDAK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	405.694364	809.374174	-0.86219	-0.00034979	0.96214	0.00039034	0.099949	4.0549E-05	405.694820226349	3.5278	0.11528	3.5278	3.4834	3.5987	0	837	31	0.761618911097395	0.0204973173150498	0.761618911097395	310.247745430234	0	8.34964362321233						251	14	3	NaN	NaN	NaN	0.065955	1	1077	40.203	23.655	1	98350			13904	859	11709	12002	13904	13904		
MASNIFGPTEEPQNIPK	17	Unmodified	_MASNIFGPTEEPQNIPK_			0	0	0	Q9H910	Q9H910	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.961651	1871.90875	2.5091	0.0023509	-2.0307	-0.0019027	0.47836	0.0004482	936.959959347432	11.296	0.22174	11.296	11.208	11.429	0	282	70	1.13599383354359	0.0459548181875775	1.13599383354359	458.351311473208	0	18.5418710584759						1018	26	5	NaN	NaN	NaN	2.6489E-07	1	28977	115.35	100.89	1	268800			13905	2929	11710	12003	13905	13905		
MASNIFGTPEENQASWAK	18	Unmodified	_MASNIFGTPEENQASWAK_			0	0	0	Q9UK76	Q9UK76	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.959639	1979.90473	2.1818	0.0021621	-0.27199	-0.00026954	1.9098	0.0018925	991.461208256753	12.201	0.22166	12.201	12.13	12.352	0	204	76	1.18784641916898	0.0498068956194959	1.18784641916898	479.080442834606	0	20.0880427170869						1433	26	6	NaN	NaN	NaN	5.853E-19	1	31279	185.57	155.5	1	686140			13906	3257	11711	12004	13906	13906		
MASPPAPSPAPPAISPIIK	19	Unmodified	_MASPPAPSPAPPAISPIIK_			0	0	0	Q00587	Q00587	Q00587	CDC42EP1	Cdc42 effector protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.513322	1841.01209	2.1256	0.0019588	-2.7137	-0.0025007	-0.58812	-0.00054196	922.012920429132	12.751	0.070956	12.751	12.715	12.786	0	219	28	1.17788915118882	0.0179280079537292	1.17788915118882	475.313926441053	0	7.23449387843749						122	9	3	NaN	NaN	NaN	0.040014	1	28268	42.495	39.78	1	27997			13907	1502	11712	12005	13907	13907		
MASTFIGNSTAIQELFK	17	Unmodified	_MASTFIGNSTAIQELFK_			0	0	0	Q9BUF5	Q9BUF5	Q9BUF5	TUBB6	Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.474394	1856.93424	1.0156	0.00094399	0.21706	0.00020176	1.2327	0.0011457	929.975794712713	17.982	0.19508	17.982	17.885	18.08	0	255	55	1.15396378101328	0.0359374340321577	1.15396378101328	465.629446585478	0	14.5009122430188						630	23	5	NaN	NaN	NaN	7.0863E-06	1	28631	95.345	2.5982	1	163720			13908	2745	11713	12006	13908	13908		
MATEVAADALGEEWK	15	Unmodified	_MATEVAADALGEEWK_			0	0	0	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.923984	1619.75012	0.88054	0.00047631	-1.163	-0.00062907	-0.28241	-0.00015276	540.923447428672	12.751	0.1419	12.751	12.68	12.822	0	645	37	0.892219381832517	0.0243788876669334	0.892219381832517	540.604738007415	0	14.7714143499393						445	17	5	NaN	NaN	NaN	0.00030018	1	22174	97.175	77.851	1	205500			13909	1396	11714	12007	13909	13909		
MATEVAADALGEEWK	15	Oxidation (M)	_M(Oxidation (M))ATEVAADALGEEWK_	M(1)ATEVAADALGEEWK	M(150)ATEVAADALGEEWK	0	1	0	P62753	P62753	P62753	RPS6	40S ribosomal protein S6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.879795	1635.74504	1.8167	0.0014876	0.098	8.025E-05	1.9147	0.0015679	818.880009264152	11.403	0.17743	11.403	11.332	11.509	-1.7764E-15	390	67	1.06389100039157	0.0441783421214557	1.06389100039157	429.714829295416	0	17.8440166673924						704	21	4	NaN	NaN	NaN	4.3375E-08	1	22651	150.44	143.7	1	187680			13910	1396	11714	12008	13910	13910	499	
MATFEIDEK	9	Unmodified	_MATFEIDEK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.254982	1082.49541	0.78123	0.00042362	1.3628	0.00073899	2.144	0.0011626	542.255275921403	8.343	0.088722	8.343	8.2987	8.3874	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	369.329810690605	0	7.40800607262975						151	11	3	NaN	NaN	NaN	0.069915	1	6262	23.053	12.351	1	37023			13911	702	11715	12009	13911	13911		
MATHTLITGLEEYVR	15	Unmodified	_MATHTLITGLEEYVR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.634545	1732.88181	-0.70175	-0.00040606	-1.1712	-0.00067772	-1.873	-0.0010838	578.634004790007	14.178	0.097547	14.178	14.134	14.232	1.7764E-15	672	31	0.873923798053065	0.0203383037367069	0.873923798053065	529.226367837776	0	12.3163674436353						201	12	4	NaN	NaN	NaN	2.8596E-06	1	25409	106	97.629	1	39194			13912	1081	11716	12010	13912	13912		
MATHTLITGLEEYVR	15	Unmodified	_MATHTLITGLEEYVR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.448179	1732.88181	2.0101	0.0017437	1.9334	0.0016771	3.9435	0.0034208	867.449542148395	14.187	0.12412	14.187	14.143	14.267	0	300	64	1.12400150285141	0.0419991790734675	1.12400150285141	453.780189922605	0	16.9558451729854						291	15	2	NaN	NaN	NaN	0.056321	1	25412	43.613	25.882	1	94998			13913	1081	11716	12010	13913	13913		
MAVDGGCGDTGDWEGR	16	Unmodified	_MAVDGGCGDTGDWEGR_			0	0	0	Q8TBC4	Q8TBC4	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.830311	1681.64607	2.4197	0.0020369	-0.86044	-0.00072434	1.5592	0.0013126	841.829661546232	7.2787	0.097544	7.2787	7.2432	7.3408	0	417	31	1.04580932352505	0.0201032305459359	1.04580932352505	422.314641895625	0	8.11800814735108						229	12	4	NaN	NaN	NaN	4.3219E-12	1	23950	135.13	130.61	1	55032			13914	2336	11718	12011	13914	13914		
MAVDQDWPSVYPVAAPFK	18	Unmodified	_MAVDQDWPSVYPVAAPFK_			0	0	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.99549	2019.97643	0.72371	0.00073166	-1.172	-0.0011849	-0.44829	-0.00045322	1010.99157663517	16.768	0.3548	16.768	16.573	16.927	0	195	91	1.19381749893585	0.0596821745163416	1.19381749893585	481.422191614031	0	24.0676010207252						1088	41	4	NaN	NaN	NaN	6.8255E-05	1	31984	50.641	45.825	1	214940			13915	1472	11719	12012	13915	13915		
MAVLALLAK	9	Unmodified	_MAVLALLAK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.296256	928.57796	-1.4484	-0.00067395	-1.3515	-0.00062883	-2.7999	-0.0013028	465.295648448191	14.976	0.15073	14.976	14.932	15.083	0	759	79	0.814815566123307	0.0530488462145855	0.814815566123307	331.207356596225	0	21.5633682709415						529	18	3	NaN	NaN	NaN	0.032946	1	2860	29.102	22.871	1	190340			13916	1465	11720	12013	13916	13916		
MAVLNEQVK	9	Unmodified	_MAVLNEQVK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.281334	1030.54812	0.95091	0.00049094	0.74152	0.00038283	1.6924	0.00087377	516.281880351135	6.5781	0.23054	6.5781	6.5161	6.7466	0	663	40	0.880024865079826	0.0264306247374108	0.880024865079826	357.197174669357	0	10.7280428719395						546	27	4	NaN	NaN	NaN	0.0016755	1	5015	69.905	59.826	1	339800			13917	1126	11721	12014	13917	13917		
MAVSWHHDENLVDR	14	Unmodified	_MAVSWHHDENLVDR_			0	0	0	Q9C0B1	Q9C0B1	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.266856	1707.77874	0.070555	4.0235E-05	1.3378	0.00076291	1.4084	0.00080314	570.267482069271	7.0214	0.079881	7.0214	6.9949	7.0747	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	521.893231104909	0	11.0960303777262						197	10	4	NaN	NaN	NaN	0.00018764	1	24695	44.045	38.017	1	52449			13918	2818	11722	12015	13918	13918		
MAVTFIGNSTAIQELFK	17	Unmodified	_MAVTFIGNSTAIQELFK_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.997483	1868.97062	-0.34225	-0.00021356	-0.33438	-0.00020865	-0.67663	-0.00042222	624.33161143494	19.091	0.097542	19.091	19.055	19.153	0	600	40	0.922661313351899	0.0263610708448411	0.922661313351899	558.417947712754	0	15.9543863687197						171	12	2	NaN	NaN	NaN	0.01013	1	28915	48.822	48.084	1	88764			13919	560	11723	12016	13919	13919		
MAVTFIGNSTAIQELFK	17	Unmodified	_MAVTFIGNSTAIQELFK_			0	0	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.492587	1868.97062	1.2997	0.0012158	0.67622	0.0006326	1.9759	0.0018484	935.994950094549	19.091	0.31032	19.091	19.029	19.339	0	249	259	1.15795408347545	0.171113698688753	1.15795408347545	467.217237046236	0	69.0418304689338						2944	36	7	NaN	NaN	NaN	3.9906E-46	1	28917	278.06	247.02	1	2568300			13920	560	11723	12016	13920	13920		
MAVTFIGNSTAIQELFK	17	Oxidation (M)	_M(Oxidation (M))AVTFIGNSTAIQELFK_	M(1)AVTFIGNSTAIQELFK	M(170)AVTFIGNSTAIQELFK	0	1	0	P07437	P07437	P07437	TUBB	Tubulin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.490044	1884.96554	1.392	0.0013133	-0.6305	-0.00059487	0.76146	0.00071843	943.99136726182	18.24	0.32808	18.24	18.036	18.364	0	246	91	1.1599488233373	0.0598052596078178	1.1599488233373	467.992827266529	0	24.1290235967011						1579	38	6	NaN	NaN	NaN	9.477E-14	1	29267	169.05	145.25	1	777200			13921	560	11723	12017	13921	13921	139	
MCDLVSDFDGFSER	14	Unmodified	_MCDLVSDFDGFSER_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.347805	1676.68106	1.7819	0.0014957	-0.3323	-0.00027892	1.4496	0.0012167	839.347726157075	15.163	0.10641	15.163	15.118	15.225	0	378	43	1.07192009927972	0.0280941036643514	1.07192009927972	432.869067851549	0	11.3451258853008						475	13	5	NaN	NaN	NaN	1.155E-05	1	23799	95.138	86.664	1	175480			13922	911	11724	12018	13922	13922		
MCDVMAAYFGK	11	Unmodified	_MCDVMAAYFGK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.777244	1291.53994	0.81526	0.00052729	0.35277	0.00022816	1.168	0.00075546	646.777191767358	13.345	0.062089	13.345	13.309	13.371	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.53165012854	0	8.18199241417545						159	8	4	NaN	NaN	NaN	0.012464	1	12112	49.16	44.957	1	37723			13923	2499	11725	12019	13923	13923		
MCEDLWR	7	Unmodified	_MCEDLWR_			0	0	0	Q14376	Q14376	Q14376	GALE	UDP-glucose 4-epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.215137	1008.41572	-0.31358	-0.00015842	0.51299	0.00025917	0.19941	0.00010075	505.21542473108	8.6002	0.15086	8.6002	8.5559	8.7068	0	711	28	0.847456455381371	0.018341368585978	0.847456455381371	344.077331153395	0	7.44681229659642						257	18	3	NaN	NaN	NaN	0.016674	1	4465	61.494	42.007	1	69504			13924	1750	11726	12020	13924	13924		
MCHPSIEGFTPR	12	Unmodified	_MCHPSIEGFTPR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.88844	1430.64349	0.60975	0.00029139	0.39511	0.00018882	1.0049	0.00048021	477.889117071095	7.9527	0.37256	7.9527	7.8374	8.21	-8.8818E-16	708	67	0.849494101904619	0.0448500558037563	0.849494101904619	515.292796876056	0	27.2054987119377						1371	43	6	NaN	NaN	NaN	5.0012E-08	1	16401	159.11	143.23	1	1062400			13925	922	11727	12021	13925	13925		
MCHPSIEGFTPR	12	Unmodified	_MCHPSIEGFTPR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.329021	1430.64349	2.3652	0.0016943	0.98386	0.00070477	3.3491	0.002399	716.329686681878	7.9527	0.26615	7.9527	7.8374	8.1036	0	489	91	0.997481546940468	0.0604514820612093	0.997481546940468	403.376170248455	0	24.4462540630329						1569	31	3	NaN	NaN	NaN	0.036038	1	16402	44.57	36.096	1	655420			13926	922	11727	12021	13926	13926		
MCHPSIEGFTPR	12	Oxidation (M)	_M(Oxidation (M))CHPSIEGFTPR_	M(1)CHPSIEGFTPR	M(88)CHPSIEGFTPR	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.220078	1446.6384	0.44622	0.00021562	0.94826	0.00045822	1.3945	0.00067384	483.22090551828	6.7909	0.14185	6.7909	6.7289	6.8707	0	702	31	0.853568545818287	0.0203665630059481	0.853568545818287	517.709556050082	0	12.3528032326534						362	17	4	NaN	NaN	NaN	0.00035121	1	16876	87.895	75.938	1	117240			13927	922	11727	12022	13927	13927	314	
MCLAADVPLIESGTAGYLGQVTTIK	25	Unmodified	_MCLAADVPLIESGTAGYLGQVTTIK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	870.11688	2607.32881	0.6478	0.00056366	3.4922	0.0030387	4.14	0.0036023	870.457619625956	19.126	0.088654	19.126	19.064	19.153	0	291	19	1.12999890578964	0.0119923306921799	1.12999890578964	682.476313894943	0	7.2429111248465						144	11	5	NaN	NaN	NaN	0.020892	1	37268	18.361	18.314	1	24669			13928	3188	11728	12023	13928	13928		
MCLFAGFQR	9	Unmodified	_MCLFAGFQR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.267704	1128.52086	0.43987	0.00024865	-0.078186	-4.4196E-05	0.36169	0.00020445	565.26759734123	13.478	0.088669	13.478	13.451	13.54	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.317777258434	0	7.40420822229731						173	11	3	NaN	NaN	NaN	0.0070071	1	7480	63.301	52.473	1	44691			13929	1509	11729	12024	13929	13929		
MCSLAVVNLGTHK	13	Unmodified	_MCSLAVVNLGTHK_			0	0	0	P57678	P57678	P57678	GEMIN4	Gem-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.247856	1428.72174	-1.5544	-0.00074182	-1.4659	-0.00069958	-3.0202	-0.0014414	477.247281073675	9.0706	0.097551	9.0706	9.0351	9.1326	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	488.067100687118	0	9.91782372656223						146	12	3	NaN	NaN	NaN	0.012525	1	16350	58.889	55.787	1	34756			13930	1294	11730	12025	13930	13930		
MCTLIDK	7	Unmodified	_MCTLIDK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.716981	879.41941	-1.1152	-0.00049149	-0.52884	-0.00023307	-1.644	-0.00072456	440.71659064235	5.6115	0.19511	5.6115	5.5583	5.7534	0	762	49	0.812773098473386	0.0326817653854051	0.812773098473386	330.646242831967	0	13.295350146427						376	23	3	NaN	NaN	NaN	0.071958	1	1995	36.57	20.022	1	77848			13931	1241	11731	12026	13931	13931		
MCWTLCVK	8	Unmodified	_MCWTLCVK_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.250665	1096.48678	-0.74022	-0.00040657	0.042875	2.3549E-05	-0.69734	-0.00038302	549.251119032799	11.651	0.097545	11.651	11.607	11.704	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	356.913899348643	0	6.59709384156707						174	12	3	NaN	NaN	NaN	0.01958	1	6612	36.57	26.491	1	35274			13932	3209	11732	12027	13932	13932		
MDAATLTYDTLR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDAATLTYDTLR_			1	0	0	Q9Y4P1	Q9Y4P1	Q9Y4P1	ATG4B	Cysteine protease ATG4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.839942	1411.66533	0.27282	0.00019284	1.2295	0.00086906	1.5023	0.0010619	706.840474223605	16.839	0.088688	16.839	16.803	16.892	0	402	22	1.05585747106793	0.014061585996056	1.05585747106793	427.038041599428	0	5.68716167672153						132	11	3	NaN	NaN	NaN	0.00042132	1	15807	54.584	50.691	1	28364			13933	3412	11733	12028	13933	13933		
MDAEQDPNVQVDHLNLLK	18	Unmodified	_MDAEQDPNVQVDHLNLLK_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.677361	2078.01025	-0.64233	-0.00044557	-0.2287	-0.00015865	-0.87103	-0.00060421	694.011288781249	11.678	0.070929	11.678	11.642	11.713	0	675	37	0.871889544407995	0.0244093537126775	0.871889544407995	527.298685315565	0	14.7622140954068						262	9	4	NaN	NaN	NaN	7.0802E-07	1	32989	111.38	102.63	1	63818			13934	1532	11734	12029	13934	13934		
MDAEVPDVNIEGPDAK	16	Unmodified	_MDAEVPDVNIEGPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.395809	1698.77707	2.2504	0.0019138	-0.60183	-0.0005118	1.6486	0.001402	850.395515061042	11.004	0.18622	11.004	10.95	11.137	0	375	58	1.07392668217569	0.0381145809986698	1.07392668217569	433.633137466583	0	15.3900127597106						838	22	5	NaN	NaN	NaN	0.00015687	1	24456	78.157	76.447	1	291570			13935	1584	11735	12030	13935	13935		
MDAGVTESGLNVTLTIR	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDAGVTESGLNVTLTIR_			1	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.966933	1817.91931	0.25167	0.00022901	2.0036	0.0018232	2.2552	0.0020522	909.96880159692	17.974	0.30144	17.974	17.894	18.195	0	129	31	1.23753038177212	0.0198422518386323	1.23753038177212	499.428383998895	0	8.00770948061631						492	35	3	NaN	NaN	NaN	7.0421E-05	1	27665	65.173	54.201	1	100300			13936	1833	11736	12031	13936	13936		
MDAILNYR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDAILNYR_			1	0	0	Q9UKB3	Q9UKB3	Q9UKB3	DNAJC12	DnaJ homolog subfamily C member 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.257859	1036.50117	-0.54839	-0.00028475	-1.6746	-0.00086955	-2.223	-0.0011543	519.257037328037	16.688	0.1419	16.688	16.626	16.768	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	359.645314508119	0	8.2488533533965						266	17	3	NaN	NaN	NaN	0.00071002	1	5144	104.76	93.115	1	79341			13937	3259	11737	12032	13937	13937		
MDANSATSEEMNEIIHAR	18	Unmodified	_MDANSATSEEMNEIIHAR_			0	0	0	Q9UBD5	Q9UBD5	Q9UBD5	ORC3	Origin recognition complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.635056	2017.88334	0.83723	0.00056399	-0.27121	-0.0001827	0.56602	0.00038129	673.968727965775	11.42	0.079811	11.42	11.385	11.465	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	571.593976372096	0	9.79577009560569						187	10	4	NaN	NaN	NaN	6.2173E-05	1	31943	43.518	40.971	1	41958			13938	3171	11738	12033	13938	13938		
MDASLGNLFAR	11	Unmodified	_MDASLGNLFAR_			0	0	0	Q92520	Q92520	Q92520	FAM3C	Protein FAM3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.800423	1193.58629	0.86057	0.00051445	-0.74349	-0.00044446	0.11708	6.9991E-05	597.800231727293	13.912	0.16848	13.912	13.841	14.01	0	594	46	0.926715457081489	0.0303955552959029	0.926715457081489	375.470603051001	0	12.315147427199						361	20	4	NaN	NaN	NaN	1.8783E-05	1	9256	98.009	86.649	1	167400			13939	2405	11739	12034	13939	13939		
MDATANDVPSDR	12	Unmodified	_MDATANDVPSDR_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.282791	1290.55103	2.7112	0.0017522	-1.3629	-0.00088081	1.3483	0.00087136	646.282685232154	4.1219	0.23944	4.1219	4.0332	4.2726	0	576	55	0.938871150116794	0.0364670917031453	0.938871150116794	380.068845154476	0	14.7624148724057						782	28	5	NaN	NaN	NaN	2.333E-23	1	12076	236.95	203.56	1	422670			13940	680	11740	12035	13940	13940		
MDATANDVPSPYEVR	15	Unmodified	_MDATANDVPSPYEVR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.882869	1663.75119	2.9834	0.0024848	-0.30081	-0.00025054	2.6826	0.0022343	833.385271106101	8.9819	0.43477	8.9819	8.7599	9.1947	0	411	124	1.04982941439551	0.0822700629299757	1.04982941439551	423.975283397761	0	33.2248961284555						2475	50	6	NaN	NaN	NaN	6.7268E-12	1	23439	191.95	173.44	1	1915200			13941	904	11741	12036	13941	13941		
MDATANDVPSPYEVR	15	Oxidation (M)	_M(Oxidation (M))DATANDVPSPYEVR_	M(1)DATANDVPSPYEVR	M(140)DATANDVPSPYEVR	0	1	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.880327	1679.7461	2.5774	0.0021673	-2.9065	-0.002444	-0.32917	-0.00027679	840.878401330293	7.9438	0.31041	7.9438	7.7221	8.0325	0	387	64	1.06589869032374	0.0421731417336262	1.06589869032374	430.431038045277	0	17.0303513259051						952	36	4	NaN	NaN	NaN	6.3321E-08	1	23898	135.5	132.62	1	265460			13942	904	11741	12037	13942	13942	308	
MDCQECPEGYR	11	Unmodified	_MDCQECPEGYR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.768136	1443.52172	2.7161	0.0019631	-2.0595	-0.0014885	0.65659	0.00047456	722.767141641084	4.0775	0.1419	4.0775	4.042	4.1839	0	531	55	0.969216233931596	0.0363964682875382	0.969216233931596	391.91235576246	0	14.7172788987865						513	17	5	NaN	NaN	NaN	2.9856E-08	1	16764	163.43	160.32	1	138700			13943	792	11742	12038	13943	13943		
MDCQETPEGYK	11	Unmodified	_MDCQETPEGYK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.273577	1356.5326	2.9503	0.0020041	-1.7652	-0.0011991	1.1851	0.000805	679.27258422098	3.9268	0.16846	3.9268	3.8824	4.0509	0	555	40	0.953040030838688	0.0263027118748081	0.953040030838688	385.605825774203	0	10.6422381058441						463	20	4	NaN	NaN	NaN	3.3247E-05	1	14075	110.88	106.68	1	138290			13944	326	11743	12039	13944	13944		
MDDPTVNWSNER	12	Unmodified	_MDDPTVNWSNER_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.314622	1462.61469	1.6801	0.0012304	0.85165	0.00062367	2.5317	0.001854	732.314306969005	8.2454	0.12421	8.2454	8.1922	8.3164	0	486	40	0.999498404980629	0.026215536116896	0.999498404980629	404.107162344959	0	10.5992024166921						382	15	5	NaN	NaN	NaN	8.739E-12	1	17337	132.44	126.17	1	220710			13945	709	11744	12040	13945	13945		
MDDPTVNWSNER	12	Oxidation (M)	_M(Oxidation (M))DDPTVNWSNER_	M(1)DDPTVNWSNER	M(99)DDPTVNWSNER	0	1	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.31208	1478.60961	1.3869	0.0010267	0.75516	0.00055906	2.1421	0.0015858	740.312823135447	6.8974	0.088667	6.8974	6.8619	6.9505	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	402.435376626372	0	6.52417814821672						169	11	3	NaN	NaN	NaN	4.7652E-05	1	17841	99.276	87.92	1	38729			13946	709	11744	12041	13946	13946	236	
MDDPTVNWSNERYEECK	17	Unmodified	_MDDPTVNWSNERYEECK_			0	0	1	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.970216	2171.88882	0.8482	0.00061492	0.71059	0.00051516	1.5588	0.0011301	725.304874396653	8.2454	0.097602	8.2454	8.2011	8.2987	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	539.438993914433	0	13.51220174525						353	12	5	NaN	NaN	NaN	3.4109E-05	1	34331	81.48	80.537	1	111660			13947	709	11745	12042	13947	13947		
MDDREDLVYQAK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDDREDLVYQAK_			1	0	1	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.85358	1523.69261	2.6385	0.0020128	1.0331	0.00078809	3.6716	0.0028009	762.854727033375	9.0794	0.51436	9.0794	8.9375	9.4519	0	405	91	1.05384839605172	0.060293107368949	1.05384839605172	425.921313519581	0	24.3679447470541						2074	59	6	NaN	NaN	NaN	1.4079E-16	1	19218	211.84	180.92	1	3343700			13948	1375	11746	12043	13948	13948		
MDDREDLVYQAK	12	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))DDREDLVYQAK_	M(1)DDREDLVYQAK	M(82)DDREDLVYQAK	1	1	1	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.851038	1539.68752	2.8703	0.0022126	-0.3225	-0.0002486	2.5478	0.001964	770.85102634768	6.8885	0.3991	6.8885	6.8441	7.2432	0	417	52	1.04580932352505	0.0341825748875688	1.04580932352505	422.632729000968	0	13.8138708309834						1041	46	5	NaN	NaN	NaN	0.00036476	1	19706	82.437	66.558	1	718320			13949	1375	11746	12044	13949	13949	488	
MDDTLFQLK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDDTLFQLK_			1	0	0	Q9HD42	Q9HD42	Q9HD42	CHMP1A	Charged multivesicular body protein 1a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.783907	1151.55326	-0.0062475	-3.6035E-06	-1.641	-0.00094648	-1.6472	-0.00095008	576.782973894563	17.823	0.097508	17.823	17.787	17.885	0	591	31	0.928742107665821	0.0202679123489945	0.928742107665821	376.448648626949	0	8.21522805016798						195	12	3	NaN	NaN	NaN	0.00035719	1	8105	94.806	85.413	1	40455			13950	2970	11747	12045	13950	13950		
MDEEFTK	7	Unmodified	_MDEEFTK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.194393	898.374234	-0.17041	-7.6719E-05	2.4906	0.0011213	2.3202	0.0010446	450.195068974509	4.2017	0.266	4.2017	4.1219	4.3879	0	774	31	0.804600385996946	0.020440313348464	0.804600385996946	327.215323042226	0	8.31267776128976						328	31	3	NaN	NaN	NaN	0.041846	1	2288	38.322	30.319	1	83060			13951	21	11748	12046	13951	13951		
MDELQDVQLTEIK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDELQDVQLTEIK_			1	0	0	Q9UGV2	Q9UGV2	Q9UGV2	NDRG3	Protein NDRG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.397821	1602.78109	1.2769	0.0010246	2.7183	0.0021812	3.9952	0.0032058	802.400347915633	17.344	0.16847	17.344	17.291	17.459	0	321	49	1.10999792833052	0.0320324262624319	1.10999792833052	448.415238128274	0	12.9404097824745						637	20	5	NaN	NaN	NaN	1.9008E-07	1	21675	134.2	114.88	1	213560			13952	3206	11749	12047	13952	13952		
MDELQLFR	8	Unmodified	_MDELQLFR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.265684	1050.51682	-0.086997	-4.5783E-05	-0.74804	-0.00039367	-0.83504	-0.00043945	526.265434154128	13.105	0.28369	13.105	12.99	13.274	0	690	55	0.86171403876517	0.0366496414922302	0.86171403876517	349.677271940501	0	14.8721572100242						863	33	4	NaN	NaN	NaN	1.0677E-11	1	5480	175.86	151.01	1	640200			13953	1265	11750	12048	13953	13953		
MDENQFVAVTSTNAAK	16	Unmodified	_MDENQFVAVTSTNAAK_			0	0	0	Q16555;Q14195;Q14194	Q16555	Q16555	DPYSL2;DPYSL3;CRMP1	Dihydropyrimidinase-related protein 2;Dihydropyrimidinase-related protein 3;Dihydropyrimidinase-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.409251	1724.80395	2.5036	0.0021616	1.2723	0.0010985	3.7759	0.0032602	863.410087677623	9.31	0.18618	9.31	9.2303	9.4164	0	336	58	1.09998710857178	0.038067338257582	1.09998710857178	444.101642145268	0	15.3690596012911						666	22	5	NaN	NaN	NaN	2.5416E-06	1	25184	94.507	89.979	1	176660			13954	1889	11751	12049	13954	13954		
MDEPSPLAQPLELNQHSR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDEPSPLAQPLELNQHSR_			1	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.51003	2103.0055	2.1175	0.0022287	-0.26573	-0.00027968	1.8518	0.001949	1052.51027523012	13.859	0.097527	13.859	13.815	13.912	0	72	73	1.27517645957152	0.0475301589690296	1.27517645957152	514.092628176728	0	19.1619788450742						430	12	3	NaN	NaN	NaN	0.0014356	1	33355	67.887	63.581	1	82801			13955	1625	11752	12050	13955	13955		
MDETDASSAVK	11	Unmodified	_MDETDASSAVK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.255711	1152.49687	1.5427	0.00089055	6.5116	0.0037588	8.0543	0.0046494	577.761454901446	3.6253	0.27482	3.6253	3.5544	3.8292	0	645	58	0.892219381832517	0.0385811807386501	0.892219381832517	361.641290035879	0	15.6380238510129						751	32	5	NaN	NaN	NaN	0.00056561	1	8122	59.645	47.579	1	198130			13956	1634	11754	12051	13956	13956		
MDFEDDYTHSACR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDFEDDYTHSACR_			1	0	0	Q5BKZ1	Q5BKZ1	Q5BKZ1	ZNF326	DBIRD complex subunit ZNF326	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.819412	1687.62427	2.8029	0.002368	-0.71418	-0.00060335	2.0888	0.0017646	844.818859727333	10.773	0.15074	10.773	10.72	10.871	0	342	31	1.09598084995137	0.0200340549752125	1.09598084995137	442.56189747763	0	8.08983969418318						356	18	5	NaN	NaN	NaN	0.00024916	1	24122	79.889	79.656	1	111200			13957	1960	11755	12052	13957	13957		
MDFILSHAVYCR	12	Unmodified	_MDFILSHAVYCR_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.360321	1510.70609	1.2828	0.00097029	4.036	0.0030527	5.3189	0.004023	756.364487243538	12.201	0.11533	12.201	12.165	12.281	0	366	25	1.07994477139643	0.0160471329064824	1.07994477139643	436.502139677759	0	6.48607969120087						158	14	4	NaN	NaN	NaN	0.04548	1	18827	27.589	14.315	1	38165			13958	3121	11756	12053	13958	13958		
MDGIVPDIAVGTK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDGIVPDIAVGTK_			1	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.355228	1356.6959	1.1046	0.00075038	0.24257	0.00016479	1.3471	0.00091517	679.355300678336	17.53	0.23054	17.53	17.459	17.69	0	444	79	1.02770517576159	0.0523695622090724	1.02770517576159	415.815286821909	0	21.1890190341466						1179	27	5	NaN	NaN	NaN	0.00014879	1	14096	84.309	75.332	1	597320			13959	856	11757	12054	13959	13959		
MDGPGYGDEEEPLHTILGK	19	Unmodified	_MDGPGYGDEEEPLHTILGK_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.654333	2056.94117	1.4106	0.00096862	-1.1918	-0.00081833	0.21887	0.00015029	686.988002494865	12.946	0.11526	12.946	12.901	13.017	0	573	31	0.940896116921038	0.0202482682426971	0.940896116921038	569.070923117507	0	12.2465174350054						355	14	4	NaN	NaN	NaN	0.012779	1	32653	31.767	31.645	1	79174			13960	3059	11758	12055	13960	13960		
MDGTYACSYTPVK	13	Unmodified	_MDGTYACSYTPVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.825977	1491.6374	1.2197	0.0009109	2.3058	0.001722	3.5255	0.0026329	747.330166586867	7.1014	0.11518	7.1014	7.066	7.1811	-8.8818E-16	447	31	1.02569221487577	0.0201310011285361	1.02569221487577	414.62195463368	0	8.1376800131581						190	14	3	NaN	NaN	NaN	0.0035228	1	18273	47.361	44.483	1	45352			13961	326	11759	12056	13961	13961		
MDIDAPDVDVHGPDWHLK	18	Unmodified	_MDIDAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	515.744008	2058.94693	-0.65472	-0.00033767	-0.6652	-0.00034307	-1.3199	-0.00068074	515.994380028478	12.227	0.1064	12.227	12.192	12.298	0	732	31	0.833184998970724	0.0203977162825675	0.833184998970724	671.893812459929	0	16.4490471809992						337	13	5	NaN	NaN	NaN	0.044269	1	32679	16.675	16.576	1	155400			13962	1584	11760	12057	13962	13962		
MDIDAPDVDVHGPDWHLK	18	Unmodified	_MDIDAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.322918	2058.94693	0.54945	0.00037765	0.64883	0.00044596	1.1983	0.00082361	687.657246826903	12.227	0.097541	12.227	12.192	12.29	0	594	67	0.926715457081489	0.0446017870007702	0.926715457081489	560.490540193351	0	26.9757879817604						451	12	3	NaN	NaN	NaN	2.2976E-08	1	32680	97.084	88.277	1	156010			13963	1584	11760	12057	13963	13963		
MDIDAPDVDVHGPDWHLK	18	Unmodified	_MDIDAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.48074	2058.94693	1.6301	0.0016798	0.93538	0.00096389	2.5655	0.0026437	1030.98202008492	12.227	0.088697	12.227	12.192	12.281	0	201	46	1.18983705239708	0.0298513074071098	1.18983705239708	479.755024577028	0	12.0363663998379						214	11	3	NaN	NaN	NaN	0.060594	1	32681	30.862	28.621	1	30803			13964	1584	11760	12057	13964	13964		
MDIDAPDVEVQGPDWHLK	18	Unmodified	_MDIDAPDVEVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.99469	2063.96224	-1.6002	-0.0011025	-1.0803	-0.00074431	-2.6805	-0.0018469	689.328762695734	13.7	0.062063	13.7	13.664	13.726	0	744	22	0.82502364452135	0.0142873361066338	0.82502364452135	498.97779350064	0	8.64104137236728						157	8	4	NaN	NaN	NaN	6.2242E-07	1	32768	93.649	93.082	1	36584			13965	1584	11761	12058	13965	13965		
MDIDAPDVEVQGPDWHLK	18	Unmodified	_MDIDAPDVEVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.9884	2063.96224	1.5067	0.0015564	-1.1495	-0.0011875	0.35713	0.00036891	1033.48934583193	13.682	0.062035	13.682	13.646	13.708	0	174	67	1.20774045859593	0.0437669065341655	1.20774045859593	486.965949670037	0	17.6469977906572						269	8	3	NaN	NaN	NaN	0.037286	1	32770	34.338	32.627	1	46982			13966	1584	11761	12058	13966	13966		
MDLAAAAEPGAGSQHLEVR	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDLAAAAEPGAGSQHLEVR_			1	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.978364	1963.94217	1.4024	0.0013785	-0.12629	-0.00012414	1.2761	0.0012544	982.978409852192	12.786	0.13303	12.786	12.733	12.866	0	87	67	1.26527909472281	0.0435872158663981	1.26527909472281	510.339347182393	0	17.5805254220443						654	16	4	NaN	NaN	NaN	8.2328E-11	1	31000	110.9	93.489	1	174510			13967	1757	11762	12059	13967	13967		
MDLAAAAEPGAGSQHLEVRDEVAEK	25	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDLAAAAEPGAGSQHLEVRDEVAEK_			1	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.425541	2635.25479	1.8991	0.0016701	0.53557	0.00047099	2.4347	0.0021411	879.760381833815	11.837	0.08867	11.837	11.802	11.89	0	366	40	1.07994477139643	0.0260712032771278	1.07994477139643	652.208879554975	0	15.7451294995749						332	11	4	NaN	NaN	NaN	0.00043687	1	37376	51.785	51.186	1	78337			13968	1757	11763	12060	13968	13968		
MDLDEQLK	8	Unmodified	_MDLDEQLK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.241875	990.469197	0.27964	0.00013877	-0.31383	-0.00015574	-0.034196	-1.6969E-05	496.242309599605	7.4028	0.15073	7.4028	7.3674	7.5181	0	690	34	0.86171403876517	0.0223985529654932	0.86171403876517	349.951403895544	0	9.09629494575194						255	18	3	NaN	NaN	NaN	0.040891	1	4056	41.025	27.377	1	58132			13969	69	11764	12061	13969	13969		
MDLGECLK	8	Unmodified	_MDLGECLK_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.225171	964.435788	0.14092	6.8098E-05	-0.36101	-0.00017445	-0.22009	-0.00010635	483.225053003942	7.997	0.20409	7.997	7.9172	8.1213	0	723	40	0.839303037468863	0.0265078208425806	0.839303037468863	340.976050355077	0	10.7690925099964						470	24	4	NaN	NaN	NaN	0.0097287	1	3518	75.243	50.393	1	181330			13970	3372	11765	12062	13970	13970		
MDLNSEQAEQLER	13	Unmodified	_MDLNSEQAEQLER_			0	0	0	Q52LJ0	Q52LJ0	Q52LJ0	FAM98B	Protein FAM98B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.859394	1561.70424	2.0243	0.0015827	0.68327	0.00053422	2.7076	0.002117	781.859913151806	7.9881	0.12414	7.9881	7.9438	8.068	0	450	46	1.02367897599655	0.0302027620184235	1.02367897599655	413.637426766742	0	12.2040142031706						401	15	4	NaN	NaN	NaN	7.2716E-24	1	20383	174.23	161.63	1	108000			13971	1945	11766	12063	13971	13971		
MDLQAAGAQAQGAAEPSR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDLQAAGAQAQGAAEPSR_			1	0	0	Q9NQ92	Q9NQ92	Q9NQ92	COPRS	Coordinator of PRMT5 and differentiation stimulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.428507	1812.84246	1.7935	0.0016275	-0.10758	-9.7623E-05	1.6859	0.0015298	907.428192571801	11.012	0.053206	11.012	10.986	11.039	0	183	34	1.20177511391933	0.0218819419405492	1.20177511391933	485.008972283215	0	8.83105170778157						140	7	3	NaN	NaN	NaN	0.00064379	1	27547	49.485	43.281	1	21455			13972	2998	11768	12064	13972	13972		
MDMSLDDIIK	10	Unmodified	_MDMSLDDIIK_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.78305	1179.55155	0.84908	0.00050162	-0.82338	-0.00048644	0.025699	1.5182E-05	590.783095151011	15.083	0.23059	15.083	15.03	15.26	0	606	52	0.918606045818476	0.0344769526882287	0.918606045818476	372.235573826817	0	13.9706769034686						776	27	5	NaN	NaN	NaN	0.00039957	1	8862	105.36	64.333	1	644910			13973	2172	11769	12065	13973	13973		
MDNLSSEEIQQR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDNLSSEEIQQR_			1	0	0	O00161	O00161	O00161	SNAP23	Synaptosomal-associated protein 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.340837	1490.66712	1.6635	0.0012416	1.3053	0.00097423	2.9689	0.0022158	746.341451096415	10.516	0.097583	10.516	10.48	10.578	0	408	28	1.0518390438467	0.0180866667822672	1.0518390438467	425.193998203375	0	7.31132981639468						231	12	4	NaN	NaN	NaN	0.0033721	1	18238	71.066	63.508	1	50752			13974	55	11770	12066	13974	13974		
MDNYADLSDTELTTLLR	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDNYADLSDTELTTLLR_			1	0	0	P50402	P50402	P50402	EMD	Emerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.97769	2011.94084	-0.21173	-0.00021321	1.3838	0.0013935	1.1721	0.0011803	1006.97897562968	20.022	0.017737	20.022	20.013	20.031	0	66	49	1.27913350869533	0.0316650717164555	1.27913350869533	515.841017887776	0	12.7696934797416						128	3	4	NaN	NaN	NaN	0.0005871	1	31833	65.212	64.536	1	33779			13975	1162	11771	12067	13975	13975		
MDPAWHPWL	9	Unmodified	_MDPAWHPWL_			0	0	0	Q9Y4A5	Q9Y4A5	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.768394	1151.52224	-0.31638	-0.00018248	-0.64556	-0.00037234	-0.96194	-0.00055482	576.768103363524	15.508	0.088787	15.508	15.455	15.544	-1.7764E-15	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	357.526203907389	0	6.59226433708545						130	11	2	NaN	NaN	NaN	0.07239	1	8102	31.058	26.856	1	25562			13976	3407	11772	12068	13976	13976		
MDPNTIIEALR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDPNTIIEALR_			1	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.839745	1313.66494	0.348	0.00022893	-0.089274	-5.8728E-05	0.25873	0.0001702	657.83967233344	19.924	0.1153	19.924	19.88	19.995	0	519	82	0.97729762293174	0.0545682931781325	0.97729762293174	395.550715361152	0	22.085930525337						612	14	4	NaN	NaN	NaN	0.00034706	1	12766	70.389	66.781	1	210560			13977	429	11773	12069	13977	13977		
MDQYFNQMEK	10	Unmodified	_MDQYFNQMEK_			0	0	0	Q04637;O43432	Q04637;O43432	Q04637	EIF4G1;EIF4G3	Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.281205	1332.54786	1.8348	0.0012243	0.85682	0.00057174	2.6916	0.001796	667.281759944343	7.8552	0.16846	7.8552	7.8108	7.9793	0	525	43	0.973257487423603	0.0282887809416775	0.973257487423603	393.857406719082	0	11.4478912773922						494	20	4	NaN	NaN	NaN	0.0010573	1	13362	64.064	55.591	1	232100			13978	1544;202	11775	12070	13978	13978		
MDSAGQDINLNSPNK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDSAGQDINLNSPNK_			1	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.377951	1644.74135	2.6154	0.0021534	-0.73642	-0.00060635	1.879	0.0015471	823.377663915925	10.401	0.17736	10.401	10.347	10.525	0	288	55	1.13199748998575	0.0359770043374552	1.13199748998575	457.202632449621	0	14.5307575646152						633	21	5	NaN	NaN	NaN	4.3606E-44	1	22878	268.95	249.62	1	221670			13979	199	11776	12071	13979	13979		
MDSAGQDINLNSPNK	15	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))DSAGQDINLNSPNK_	M(1)DSAGQDINLNSPNK	M(42)DSAGQDINLNSPNK	1	1	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.375408	1660.73626	4.1664	0.0034638	-1.3076	-0.0010871	2.8588	0.0023767	831.373830146672	7.7132	0.071024	7.7132	7.6865	7.7576	0	339	49	1.09798411722691	0.0320412505786125	1.09798411722691	443.42928942815	0	12.9401042816061						195	9	2	NaN	NaN	NaN	0.013096	1	23354	42.446	27.991	1	45130			13980	199	11776	12072	13980	13980	41	
MDSFDEDLARPSGLLAQER	19	Unmodified	_MDSFDEDLARPSGLLAQER_			0	0	1	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.34427	2149.01098	0.84327	0.00060492	-0.46061	-0.00033042	0.38266	0.0002745	717.678347247056	13.017	0.1064	13.017	12.972	13.079	0	579	43	0.936845902828289	0.0283554323651288	0.936845902828289	566.458635394585	0	17.1449535885074						473	13	5	NaN	NaN	NaN	5.161E-07	1	34004	83.474	81.764	1	151920			13981	3355	11777	12073	13981	13981		
MDSLLIAGQINTYCQNIK	18	Unmodified	_MDSLLIAGQINTYCQNIK_			0	0	0	O15372	O15372	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.52155	2081.02855	-0.018853	-1.9636E-05	3.2856	0.003422	3.2668	0.0034024	1042.02740854884	14.834	0.16847	14.834	14.781	14.95	1.7764E-15	66	109	1.27913350869533	0.0713246029877475	1.27913350869533	515.723642231183	0	28.7567980851761						1429	20	6	NaN	NaN	NaN	2.9446E-10	1	33048	132.9	126.38	1	333200			13982	169	11778	12074	13982	13982		
MDSTANEVEAVK	12	Unmodified	_MDSTANEVEAVK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.303192	1292.59183	3.0194	0.0019545	-0.40286	-0.00026077	2.6165	0.0016937	647.303452613957	5.0972	0.42568	5.0972	4.9997	5.4254	0	546	64	0.959108205975751	0.042471368758535	0.959108205975751	388.254607186877	0	17.192746857231						1241	49	6	NaN	NaN	NaN	5.336E-17	1	12149	195.4	177	1	1163100			13983	554	11779	12075	13983	13983		
MDSTEPPYSQK	11	Unmodified	_MDSTEPPYSQK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.784635	1281.55472	3.1423	0.0020167	-1.7448	-0.0011198	1.3975	0.0008969	641.783636678691	3.9179	0.4433	3.9179	3.7938	4.2371	0	585	58	0.932794566565362	0.0384957093532465	0.932794566565362	377.637026393409	0	15.5847876157695						1215	51	5	NaN	NaN	NaN	5.6192E-05	1	11801	114.39	109.49	1	413460			13984	1446	11780	12076	13984	13984		
MDSTNADALYVR	12	Unmodified	_MDSTNADALYVR_			0	0	0	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.316634	1354.61871	1.7352	0.001177	1.0043	0.00068125	2.7395	0.0018583	678.31698429018	7.6334	0.15966	7.6334	7.5624	7.7221	0	504	37	0.987393073566096	0.0242240595168645	0.987393073566096	399.510959181554	0	9.80134205104457						392	19	4	NaN	NaN	NaN	0.0029455	1	14031	64.064	34.755	1	131960			13985	2658	11781	12077	13985	13985		
MDTDLETMDLDQGGEALAPR	20	Unmodified	_MDTDLETMDLDQGGEALAPR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1089.4881	2176.96165	1.8419	0.0020067	-0.79716	-0.00086849	1.0447	0.0011382	1089.98969241223	13.85	0.10639	13.85	13.806	13.912	0	132	76	1.23554629282893	0.0496294717525472	1.23554629282893	498.004535782689	0	20.0038656460842						860	13	6	NaN	NaN	NaN	1.6861E-07	1	34402	93.026	91.657	1	220600			13986	350	11782	12078	13986	13986		
MDVCETHLHWHTVAK	15	Unmodified	_MDVCETHLHWHTVAK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.959146	1862.85561	0.25892	0.00016104	1.1418	0.00071016	1.4007	0.0008712	621.960128750432	6.3121	0.062065	6.3121	6.2767	6.3387	0	669	28	0.875957769340875	0.0183057433537801	0.875957769340875	530.164584890708	0	11.0793661132492						154	8	4	NaN	NaN	NaN	1.9201E-06	1	28751	77.157	74.768	1	36587			13987	523	11783	12079	13987	13987		
MDVGELLSYQPNR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDVGELLSYQPNR_			1	0	0	Q8WYA6	Q8WYA6	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.377223	1562.73989	1.4759	0.0011547	-0.5254	-0.00041106	0.9505	0.00074365	782.376816525609	18.63	0.1064	18.63	18.577	18.683	0	333	49	1.10198982404297	0.0320544938914422	1.10198982404297	445.277861380005	0	12.9521672307596						321	13	4	NaN	NaN	NaN	0.00023418	1	20434	94.66	80.204	1	82470			13988	2400	11784	12080	13988	13988		
MDVHDLFR	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MDVHDLFR_			1	0	0	Q9Y2R4	Q9Y2R4	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.755484	1073.49641	-0.74895	-0.00040275	0.78916	0.00042437	0.04021	2.1623E-05	537.756178035165	14.79	0.1419	14.79	14.737	14.879	0	654	34	0.886123392477847	0.0223581674407913	0.886123392477847	359.482797991032	0	9.07026793084987						280	17	3	NaN	NaN	NaN	0.0066544	1	6033	53.878	48.13	1	104540			13989	3349	11785	12081	13989	13989		
MDVHITPGTHASEHAVNK	18	Unmodified	_MDVHITPGTHASEHAVNK_			0	0	0	Q9Y3D0	Q9Y3D0	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	486.740262	1942.93194	0.1418	6.9018E-05	2.9629	0.0014422	3.1047	0.0015112	486.741364743045	4.0066	0.070914	4.0066	3.98	4.0509	0	771	22	0.806643990516186	0.0143032423211241	0.806643990516186	650.750293240205	0	11.5389679266078						113	9	4	NaN	NaN	NaN	0.0017994	1	30580	38.839	38.475	1	23767			13990	3386	11786	12082	13990	13990		
MDVNVGDIDIEGPEGK	16	Unmodified	_MDVNVGDIDIEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.395809	1686.77707	1.6847	0.0014226	0.2412	0.00020367	1.9259	0.0016263	844.395666829284	13.3	0.10644	13.3	13.256	13.363	0	387	88	1.06589869032374	0.0581588844838214	1.06589869032374	430.41634624141	0	23.4849097651108						600	13	4	NaN	NaN	NaN	1.4549E-08	1	24097	133.13	113.57	1	169100			13991	1584	11787	12083	13991	13991		
MDYEDDRLR	9	Unmodified	_MDYEDDRLR_			0	0	1	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.848638	1211.52409	-0.92573	-0.00037478	0.45754	0.00018523	-0.4682	-0.00018955	404.848787947803	4.7337	0.19509	4.7337	4.6982	4.8933	0	858	31	0.747263789720611	0.0205173250498002	0.747263789720611	454.064098573251	0	12.4670575933501						334	23	4	NaN	NaN	NaN	0.0058082	1	9769	58.426	52.163	1	141090			13992	1062	11788	12084	13992	13992		
MDYEDDRLR	9	Unmodified	_MDYEDDRLR_			0	0	1	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.769319	1211.52409	1.8573	0.0011269	1.7511	0.0010625	3.6084	0.0021895	606.770289738618	4.7425	0.1862	4.7425	4.6893	4.8755	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.331257250598	0	9.8443110733715						291	22	2	NaN	NaN	NaN	0.0030407	1	9770	93.467	77.886	1	167430			13993	1062	11788	12084	13993	13993		
MDYVEINIDHK	11	Unmodified	_MDYVEINIDHK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	459.555344	1375.6442	-1.5598	-0.00071682	-1.5072	-0.00069266	-3.0671	-0.0014095	459.554936182008	9.0794	0.15074	9.0794	9.0262	9.177	0	807	31	0.782101955086014	0.0204687855658668	0.782101955086014	474.594872956929	0	12.4208622955646						330	18	4	NaN	NaN	NaN	0.004519	1	14659	44.57	43.313	1	113560			13994	1498	11789	12085	13994	13994		
MEADPELSK	9	Unmodified	_MEADPELSK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.239332	1018.46411	0.85909	0.00043834	3.602	0.0018379	4.4611	0.0022762	510.744832163076	4.3169	0.23055	4.3169	4.2194	4.4499	0	729	58	0.835224628594324	0.0387314421406671	0.835224628594324	339.066009172656	0	15.7233336596402						588	27	4	NaN	NaN	NaN	0.013253	1	4695	50.834	36.299	1	190000			13995	350	11790	12086	13995	13995		
MEAFVVYR	8	Unmodified	_MEAFVVYR_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.757495	1013.50044	0.66158	0.00033592	0.60987	0.00030967	1.2714	0.00064559	507.757870548603	9.8509	0.24824	9.8509	9.7889	10.037	0	684	49	0.86578508874114	0.0325638877438675	0.86578508874114	351.495231480165	0	13.2204301151311						458	29	4	NaN	NaN	NaN	0.00032397	1	4587	109.11	91.413	1	210030			13996	1778	11791	12087	13996	13996		
MEALILEPSLYTVK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEALILEPSLYTVK_			1	0	0	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.94695	1647.87935	1.4143	0.0011667	0.59449	0.00049042	2.0088	0.0016572	824.947751169212	20.119	0.053194	20.119	20.111	20.164	0	249	58	1.15795408347545	0.0378844489628292	1.15795408347545	467.678800247297	0	15.3009120929807						203	7	5	NaN	NaN	NaN	1.8202E-05	1	22978	105.94	99.915	1	128620			13997	1353	11792	12088	13997	13997		
MEALILEPSLYTVK	14	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))EALILEPSLYTVK_	M(1)EALILEPSLYTVK	M(67)EALILEPSLYTVK	1	1	0	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.944407	1663.87426	1.6	0.0013327	0.27483	0.00022891	1.8748	0.0015616	832.944334188522	18.497	0.062136	18.497	18.461	18.523	0	246	55	1.1599488233373	0.0358880628885423	1.1599488233373	468.446893904116	0	14.493442512407						297	8	3	NaN	NaN	NaN	0.00016386	1	23459	66.664	47.341	1	62906			13998	1353	11792	12089	13998	13998	484	
MEALIPVINK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEALIPVINK_			1	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.333567	1168.65258	-0.40248	-0.00023559	-0.88425	-0.00051758	-1.2867	-0.00075317	585.333237428461	19.109	0.12414	19.109	19.046	19.171	0	600	34	0.922661313351899	0.0222993386334626	0.922661313351899	373.919146114684	0	9.0370643486234						335	15	4	NaN	NaN	NaN	3.2203E-05	1	8579	102.46	97.558	1	110670			13999	79	11793	12090	13999	13999		
MEATGVLPFVR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEATGVLPFVR_			1	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.334098	1260.65364	0.45144	0.00028501	0.30609	0.00019325	0.75753	0.00047826	631.334357081863	18.639	0.088678	18.639	18.603	18.692	0	483	37	1.00151498427745	0.0242006280672292	1.00151498427745	405.529789315183	0	9.79922992213545						218	11	4	NaN	NaN	NaN	5.3509E-17	1	11238	175.51	150.26	1	63749			14000	1621	11794	12091	14000	14000		
MEATLEQHLEDTMK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEATLEQHLEDTMK_			1	0	0	O43504	O43504	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.392212	1716.76987	1.9352	0.0016631	1.0049	0.00086363	2.9402	0.0025268	859.393286253667	15.828	0.15965	15.828	15.775	15.934	0	258	37	1.15196821829984	0.0239516960095993	1.15196821829984	465.10551003829	0	9.67046278869401						505	19	5	NaN	NaN	NaN	5.2198E-24	1	24955	161.23	156.4	1	201510			14001	207	11795	12092	14001	14001		
MEAVVNLYQEVMK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEAVVNLYQEVMK_			1	0	0	Q9BW60	Q9BW60	Q9BW60	ELOVL1	Elongation of very long chain fatty acids protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.394027	1594.7735	0.58594	0.00046781	0.27699	0.00022115	0.86294	0.00068897	798.394180425322	20.261	0.026599	20.261	20.261	20.288	0	306	28	1.12000185836644	0.0180021182425405	1.12000185836644	452.47608327679	0	7.27278074783806						74	4	4	NaN	NaN	NaN	0.00020732	1	21426	67.548	49.817	1	28623			14002	2773	11796	12093	14002	14002		
MEDEDEQGWCK	11	Unmodified	_MEDEDEQGWCK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.766116	1425.51768	2.4472	0.0017467	0.10352	7.3888E-05	2.5507	0.0018206	713.765815073636	4.9908	0.11526	4.9908	4.9553	5.0706	0	519	25	0.97729762293174	0.0161560731115115	0.97729762293174	395.227511016957	0	6.53365404135099						182	14	3	NaN	NaN	NaN	0.00078521	1	16240	74.424	74.424	1	46853			14003	3294	11797	12094	14003	14003		
MEDHQHVPIDIQTSK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEDHQHVPIDIQTSK_			1	0	0	Q96JB5	Q96JB5	Q96JB5	CDK5RAP3	CDK5 regulatory subunit-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.292959	1818.85705	-0.72021	-0.00043738	-0.30101	-0.0001828	-1.0212	-0.00062018	607.627164070675	8.4051	0.070943	8.4051	8.3785	8.4495	0	753	58	0.81889964927511	0.0387691446522459	0.81889964927511	495.719255328166	0	23.468823724291						390	9	4	NaN	NaN	NaN	0.00015197	1	27685	53.051	52.312	1	97869			14004	2566	11798	12095	14004	14004		
MEDQFAALHENPDIIIATPGR	21	Unmodified	_MEDQFAALHENPDIIIATPGR_			0	0	0	Q8TDD1	Q8TDD1	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	780.05472	2337.14233	1.2969	0.0010116	-1.3631	-0.0010633	-0.066177	-5.1621E-05	780.38892608988	13.832	0.079788	13.832	13.806	13.886	0	534	67	0.967195187796614	0.0444907380915777	0.967195187796614	584.507021621301	0	26.8871776242852						330	10	4	NaN	NaN	NaN	6.1419E-12	1	35946	130.7	125.36	1	58201			14005	2347	11799	12096	14005	14005		
MEDSEALGFEHMGLDPR	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEDSEALGFEHMGLDPR_			1	0	0	Q9NY93	Q9NY93	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.429858	1974.84516	1.2777	0.0012629	-0.17683	-0.00017479	1.1009	0.0010882	988.931354689453	15.775	0.10644	15.775	15.721	15.828	0	132	61	1.23554629282893	0.039684517663034	1.23554629282893	498.327572086044	0	16.0057858221939						550	13	4	NaN	NaN	NaN	1.1861E-06	1	31191	69.641	68.053	1	134400			14006	3111	11800	12097	14006	14006		
MEDSMDMDMSPLRPQNYLFGCELK	24	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEDSMDMDMSPLRPQNYLFGCELK_			1	0	1	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	983.758041	2948.25229	1.3638	0.0013416	-0.61743	-0.0006074	0.74637	0.00073424	984.092007403001	19.419	0.097591	19.419	19.366	19.463	0	405	73	1.05384839605172	0.0482344672999115	1.05384839605172	636.093865541932	0	29.1139113292827						829	12	6	NaN	NaN	NaN	1.7281E-17	1	38144	100.36	100.22	1	212060			14007	547	11801	12098	14007	14007		
MEDSMDMDMSPLRPQNYLFGCELK	24	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))MEDSM(Oxidation (M))DMDMSPLRPQNYLFGCELK_	M(0.033)EDSM(0.453)DM(0.453)DM(0.061)SPLRPQNYLFGCELK	M(-11)EDSM(0)DM(0)DM(-8.7)SPLRPQNYLFGCELK	1	1	1	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	989.089679	2964.24721	1.6118	0.0015942	-0.50999	-0.00050442	1.1018	0.0010897	989.423858480678	18.523	0.23946	18.523	18.355	18.594	0	411	82	1.04982941439551	0.0542375898478167	1.04982941439551	633.651983411808	0	32.7365150102353						1772	28	5	NaN	NaN	NaN	9.3853E-13	1	38163	67.251	66.696	4	398990			14008	547	11801	12099	14008	14008	121;122;123;124	
MEDSMDMDMSPLRPQNYLFGCELK	24	Acetyl (Protein N-term),4 Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))EDSM(Oxidation (M))DM(Oxidation (M))DM(Oxidation (M))SPLRPQNYLFGCELK_	M(1)EDSM(1)DM(1)DM(1)SPLRPQNYLFGCELK	M(72)EDSM(72)DM(72)DM(72)SPLRPQNYLFGCELK	1	4	1	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1005.08459	3012.23195	1.7219	0.0017306	-1.4892	-0.0014967	0.23272	0.0002339	1005.41777467762	15.553	0.11528	15.553	15.491	15.606	0	429	37	1.03776581230406	0.0241405316442127	1.03776581230406	626.324068931656	0	14.5695645648681						358	14	5	NaN	NaN	NaN	3.5434E-06	1	38250	72.311	71.139	1	56143			14009	547	11801	12100	14009	14009	121;122;123;124	
MEDSVGCLETAEEVK	15	Unmodified	_MEDSVGCLETAEEVK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.873853	1695.73315	2.6073	0.0022133	0.4791	0.00040669	3.0864	0.00262	848.875802823214	9.1947	0.25719	9.1947	9.1326	9.3898	0	327	76	1.10599442759226	0.0500886186558791	1.10599442759226	446.58802506725	0	20.225216986466						967	30	6	NaN	NaN	NaN	4.1563E-08	1	24358	154.09	142.07	1	515940			14010	972	11802	12101	14010	14010		
MEDSVGCLETAEEVK	15	Oxidation (M)	_M(Oxidation (M))EDSVGCLETAEEVK_	M(1)EDSVGCLETAEEVK	M(170)EDSVGCLETAEEVK	0	1	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.87131	1711.72807	2.8535	0.002445	3.7557	0.0032182	6.6092	0.0056632	856.871567731014	8.1656	0.12413	8.1656	8.1213	8.2454	0	327	31	1.10599442759226	0.0200230200251346	1.10599442759226	446.554182303537	0	8.08445604381257						223	15	4	NaN	NaN	NaN	8.743E-12	1	24802	169.57	161.57	1	65743			14011	972	11802	12102	14011	14011	350	
MEEADALIESLCR	13	Unmodified	_MEEADALIESLCR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.855266	1535.69598	1.505	0.0011571	-0.15583	-0.00011981	1.3491	0.0010373	768.855366844241	15.047	0.12412	15.047	15.003	15.127	0	423	64	1.04178812298108	0.042243029559234	1.04178812298108	421.017431175245	0	17.0716591961105						538	15	5	NaN	NaN	NaN	2.2221E-07	1	19594	147.19	137.67	1	187680			14012	2641	11803	12103	14012	14012		
MEEANIQPNR	10	Unmodified	_MEEANIQPNR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.285137	1200.55572	1.9625	0.00118	-0.48221	-0.00028994	1.4803	0.00089009	601.284854787561	3.9977	0.21281	3.9977	3.9179	4.1307	0	624	34	0.906433495720521	0.0223209853619647	0.906433495720521	367.228741742684	0	9.0430322882271						499	25	3	NaN	NaN	NaN	3.7813E-05	1	9468	119.07	67.638	1	226210			14013	1055	11804	12104	14013	14013		
MEEDPDDVPHGHITSLAVK	19	Unmodified	_MEEDPDDVPHGHITSLAVK_			0	0	0	P41227	P41227	P41227	NAA10	N-alpha-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	523.251931	2088.97862	1.4459	0.00075657	1.3579	0.0007105	2.8038	0.0014671	523.503446638425	7.7664	0.1242	7.7664	7.7309	7.8552	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	727.618763750392	0	14.7319849791679						308	15	5	NaN	NaN	NaN	0.02039	1	33165	36.96	31.344	1	95287			14014	1032	11805	12105	14014	14014		
MEEGEVYAIETFGSTGK	17	Unmodified	_MEEGEVYAIETFGSTGK_			0	0	0	P50579	P50579	P50579	METAP2	Methionine aminopeptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.422024	1846.8295	1.2515	0.001157	0.20514	0.00018964	1.4567	0.0013466	924.924381825432	13.416	0.10643	13.416	13.38	13.487	0	156	28	1.21966378336455	0.0178788550489832	1.21966378336455	492.159651070955	0	7.21448909320088						161	13	3	NaN	NaN	NaN	1.6834E-06	1	28399	92.747	86.371	1	32113			14015	1168	11806	12106	14015	14015		
MEEIGILVEK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEEIGILVEK_			1	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.820489	1201.62643	-0.0099329	-5.9778E-06	-0.45932	-0.00027643	-0.46925	-0.0002824	601.820215574919	18.674	0.11525	18.674	18.639	18.754	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	390.203596400617	0	7.37217084848459						242	14	4	NaN	NaN	NaN	3.0634E-05	1	9513	87.895	77.193	1	83714			14016	1068	11807	12107	14016	14016		
MEEIVEGCTGALHILAR	17	Unmodified	_MEEIVEGCTGALHILAR_			0	0	0	P14923;P35222	P14923	P14923	JUP;CTNNB1	Junction plakoglobin;Catenin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.976778	1897.939	1.6054	0.0015251	-1.1605	-0.0011024	0.4449	0.00042265	950.47731976223	12.662	0.088659	12.662	12.635	12.724	0	150	34	1.22363604450103	0.0218459409911607	1.22363604450103	493.663411264129	0	8.81352081808683						209	11	4	NaN	NaN	NaN	4.3129E-11	1	29565	121.69	118.19	1	45305			14017	706	11808	12108	14017	14017		
MEEIVEGCTGALHILAR	17	Unmodified	_MEEIVEGCTGALHILAR_			0	0	0	P14923;P35222	P14923	P14923	JUP;CTNNB1	Junction plakoglobin;Catenin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.653611	1897.939	0.97787	0.00061963	-0.17423	-0.0001104	0.80364	0.00050923	633.653485949763	12.662	0.088659	12.662	12.635	12.724	0	546	31	0.959108205975751	0.0202258527858471	0.959108205975751	580.411313623834	0	12.2398220674722						172	11	2	NaN	NaN	NaN	1.0785E-06	1	29566	81.48	73.106	1	81165			14018	706	11808	12108	14018	14018		
MEELHNQEMQK	11	Unmodified	_MEELHNQEMQK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.879721	1415.61733	-0.15242	-7.2077E-05	-0.12778	-6.0426E-05	-0.2802	-0.0001325	472.88101855907	3.1286	0.088678	3.1286	3.0932	3.1818	0	768	31	0.808687310729125	0.0204346260342226	0.808687310729125	490.58968236755	0	12.3966538888687						183	11	4	NaN	NaN	NaN	0.023133	1	15945	57.032	51.166	1	36060			14019	814	11809	12109	14019	14019		
MEELHNQEMQK	11	Unmodified	_MEELHNQEMQK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.815944	1415.61733	2.5266	0.0017909	-0.31024	-0.0002199	2.2164	0.001571	708.816205184726	3.1198	0.12414	3.1198	3.102	3.2262	0	519	37	0.97729762293174	0.024237464198638	0.97729762293174	395.254072683441	0	9.80249640564188						161	15	2	NaN	NaN	NaN	0.00077909	1	15947	43.168	41.369	1	34313			14020	814	11809	12109	14020	14020		
MEELHNQEVQK	11	Unmodified	_MEELHNQEVQK_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.829908	1383.64526	1.874	0.0012984	-2.2636	-0.0015683	-0.38955	-0.00026989	692.829510766092	2.8981	0.09754	2.8981	2.8804	2.9779	0	522	25	0.975277694896658	0.0161605431921971	0.975277694896658	394.525318606162	0	6.53736211246559						162	12	3	NaN	NaN	NaN	2.9252E-05	1	14937	115.41	83.271	1	32358			14021	1824	11810	12110	14021	14021		
MEELHNQEVQK	11	Unmodified	_MEELHNQEVQK_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.222364	1383.64526	-0.30319	-0.00014014	3.6211	0.0016737	3.3179	0.0015336	462.224456924917	2.8981	0.24827	2.8981	2.8449	3.0932	0	753	40	0.81889964927511	0.0265410084545386	0.81889964927511	496.895862549759	0	16.1046805925884						249	29	3	NaN	NaN	NaN	0.013575	1	14939	62.271	31.353	1	58673			14022	1824	11810	12110	14022	14022		
MEELSADEIRR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEELSADEIRR_			1	0	1	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.835191	1389.65583	1.4637	0.0010185	2.3193	0.0016138	3.783	0.0026323	695.836174915216	10.551	0.062081	10.551	10.534	10.596	0	435	19	1.03374239103424	0.0120719306763397	1.03374239103424	418.15790225988	0	4.88320228678498						112	8	3	NaN	NaN	NaN	0.0004916	1	15130	76.572	64.615	1	23038			14023	407	11811	12111	14023	14023		
MEEQEQMQEEQR	12	Unmodified	_MEEQEQMQEEQR_			0	0	0		REV__Q8N9W4	REV__Q8N9W4			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.827237	1593.63992	2.7654	0.0022063	2.6981	0.0021526	5.4634	0.0043589	798.331116298253	4.8489	0.24828	4.8489	4.7248	4.9731	0	402	76	1.05585747106793	0.0502685125885778	1.05585747106793	426.564621554985	0	20.3083935436766						734	29	3	NaN	NaN	NaN	0.00058378	1	21372	50.834	40.047	1	133310	+		14024	3502	11812	12112	14024	14024		
MEESFSSK	8	Unmodified	_MEESFSSK_			0	0	0	P42167	P42167	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.705125	943.395698	0.054741	2.5876E-05	1.9783	0.00093514	2.033	0.00096101	472.705908738971	3.3149	0.14187	3.3149	3.2794	3.4213	0	759	28	0.814815566123307	0.0183822106275564	0.814815566123307	331.13148164367	0	7.47031462585932						250	17	3	NaN	NaN	NaN	0.055936	1	3116	31.952	20.303	1	57775			14025	1043	11813	12113	14025	14025		
MEESVNQMQPLNEK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEESVNQMQPLNEK_			1	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.889837	1717.76512	1.4883	0.0012798	1.1544	0.00099267	2.6427	0.0022724	859.891234026969	11.979	0.1064	11.979	11.944	12.05	0	291	34	1.12999890578964	0.0219874545047771	1.12999890578964	456.233314085992	0	8.87736190330156						375	13	5	NaN	NaN	NaN	2.0484E-17	1	24985	162.23	158.24	1	95120			14026	621	11814	12114	14026	14026		
MEETPTEYLQR	11	Unmodified	_MEETPTEYLQR_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.824292	1395.63403	1.8341	0.0012817	2.7913	0.0019506	4.6254	0.0032323	698.826147020853	8.3785	0.18627	8.3785	8.3076	8.4938	0	468	55	1.01159370163332	0.0362909172147328	1.01159370163332	409.181291739462	0	14.6793760779235						408	22	2	NaN	NaN	NaN	4.6225E-05	1	15303	88.181	72.599	1	231890			14027	2308	11815	12115	14027	14027		
MEEVPHDCPGADSAQAGR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEEVPHDCPGADSAQAGR_			1	0	0	P53384	P53384	P53384	NUBP1	Cytosolic Fe-S cluster assembly factor NUBP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.912363	1967.81017	2.7531	0.0027115	-1.4224	-0.0014009	1.3307	0.0013106	985.41276121949	7.3674	0.097476	7.3674	7.3231	7.4205	0	273	70	1.14198628764525	0.0458979710407414	1.14198628764525	460.60391364301	0	18.5122932896427						578	12	4	NaN	NaN	NaN	8.5319E-06	1	31060	48.363	46.775	1	118470			14028	1234	11816	12116	14028	14028		
MEEVVIAGMSGK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEEVVIAGMSGK_			1	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.814881	1291.61521	0.98161	0.00063492	-0.46744	-0.00030235	0.51418	0.00033258	646.815110319335	17.53	0.25715	17.53	17.459	17.716	0	486	43	0.999498404980629	0.0282301658273657	0.999498404980629	404.608115097596	0	11.4278863551807						814	30	5	NaN	NaN	NaN	6.997E-17	1	12119	203.55	178.3	1	436930			14029	1127	11817	12117	14029	14029		
MEFDLGAALEPTSQK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEFDLGAALEPTSQK_			1	0	0	Q9GZP8	Q9GZP8	Q9GZP8	IMUP	Immortalization up-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.90327	1677.79199	1.4773	0.0012408	0.13591	0.00011415	1.6132	0.0013549	839.903371415684	18.967	0.1064	18.967	18.914	19.02	0	270	31	1.14398322290989	0.0199679817951182	1.14398322290989	461.967512378258	0	8.06354384607232						242	13	4	NaN	NaN	NaN	1.102E-06	1	23846	117.21	103.41	1	52618			14030	2827	11818	12118	14030	14030		
MEGGFGSDFGGSGSGK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEGGFGSDFGGSGSGK_			1	0	0	Q9Y5L4	Q9Y5L4	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.811913	1517.60927	2.8541	0.0021686	0.54004	0.00041033	3.3941	0.0025789	759.812464798213	12.848	0.17734	12.848	12.795	12.972	0	357	40	1.08596037261705	0.0260604263960942	1.08596037261705	438.915468251057	0	10.5329112764021						437	21	4	NaN	NaN	NaN	9.2046E-05	1	19054	75.012	54.677	1	126220			14031	3438	11819	12119	14031	14031		
MEGGGAEVHAQLPSLEGDLR	20	Unmodified	_MEGGGAEVHAQLPSLEGDLR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.337227	2064.98985	0.58323	0.00040204	-0.31	-0.0002137	0.27323	0.00018835	689.67123511987	11.305	0.18626	11.305	11.208	11.394	0	630	55	0.902373728295776	0.0365328548070064	0.902373728295776	545.757635733983	0	22.0951517546281						551	22	3	NaN	NaN	NaN	1.614E-05	1	32787	56.943	50.421	1	112880			14032	1584	11820	12120	14032	14032		
MEGPLSVFGDR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEGPLSVFGDR_			1	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.297713	1248.58087	0.61266	0.0003831	-1.3599	-0.00085033	-0.74722	-0.00046723	625.29703980834	18.701	0.29259	18.701	18.515	18.807	0	579	40	0.936845902828289	0.0263282200540531	0.936845902828289	379.383967033466	0	10.6618436808891						858	34	4	NaN	NaN	NaN	1.349E-07	1	10864	124.81	119.9	1	530760			14033	747	11821	12121	14033	14033		
MEGQSVEELLAK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEGQSVEELLAK_			1	0	0	Q15050	Q15050	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.342317	1374.67008	0.51037	0.00035131	0.96472	0.00066406	1.4751	0.0010154	688.343062274061	16.395	0.11527	16.395	16.342	16.457	0	429	34	1.03776581230406	0.0221242386339204	1.03776581230406	419.830498025836	0	8.95041059745353						297	14	4	NaN	NaN	NaN	0.00024988	1	14646	90.142	68.868	1	90308			14034	1802	11822	12122	14034	14034		
MEGVSALLAR	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEGVSALLAR_			1	0	0	Q5SNT2	Q5SNT2	Q5SNT2	TMEM201	Transmembrane protein 201	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.792066	1087.56958	-0.08899	-4.8481E-05	-0.85534	-0.00046598	-0.94433	-0.00051446	544.79169179498	17.867	0.088666	17.867	17.823	17.912	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	375.888568145114	0	6.57675549907702						117	11	3	NaN	NaN	NaN	2.5468E-07	1	6405	133.98	109.13	1	24473			14035	1978	11823	12123	14035	14035		
MEGVTNAVLHEVK	13	Unmodified	_MEGVTNAVLHEVK_			0	0	0	Q9C0B1	Q9C0B1	Q9C0B1	FTO	Alpha-ketoglutarate-dependent dioxygenase FTO	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.250143	1425.7286	-1.5179	-0.00072292	-0.39479	-0.00018802	-1.9127	-0.00091094	476.249954902805	8.5027	0.11528	8.5027	8.4584	8.5736	0	801	28	0.78619514174348	0.0184180594239544	0.78619514174348	476.912140844185	0	11.1725393400351						271	14	4	NaN	NaN	NaN	0.00021581	1	16254	78.043	73.515	1	89118			14036	2818	11824	12124	14036	14036		
MEHFDASLSTYFK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEHFDASLSTYFK_			1	0	0	Q9NYP7	Q9NYP7	Q9NYP7	ELOVL5	Elongation of very long chain fatty acids protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.366324	1616.71809	1.4571	0.0011794	3.3022	0.0026727	4.7594	0.0038521	809.368936144691	16.856	0.21285	16.856	16.812	17.025	0	345	40	1.09397730668811	0.0260496561958328	1.09397730668811	441.910608143157	0	10.5227223097257						492	25	4	NaN	NaN	NaN	0.00035268	1	22092	79.889	77.218	1	103640			14037	3120	11825	12125	14037	14037		
MEIVDHALHALTDEVIIPHSGWER	24	Unmodified	_MEIVDHALHALTDEVIIPHSGWER_			0	0	0	O60716	O60716	O60716	CTNND1	Catenin delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	692.851072	2767.37518	0.052795	3.6579E-05	0.75493	0.00052305	0.80772	0.00055963	693.353927855525	17.184	0.1064	17.184	17.149	17.255	0	501	28	0.98941132619024	0.0181642753536437	0.98941132619024	796.509856955734	0	14.6228610696675						261	13	5	NaN	NaN	NaN	8.8E-05	1	37809	82.822	82.643	1	58101			14038	276	11826	12126	14038	14038		
MEIVELEDHPFFVGVQYHPEFLSR	24	Unmodified	_MEIVELEDHPFFVGVQYHPEFLSR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	730.360002	2917.4109	0.24933	0.0001821	2.7546	0.0020118	3.0039	0.0021939	730.86384699862	17.406	0.11526	17.406	17.362	17.477	0	441	22	1.02971785871157	0.0140887814556805	1.02971785871157	828.744945835904	0	11.3390345963228						215	14	5	NaN	NaN	NaN	0.05268	1	38098	6.0477	5.8984	1	36496			14039	741	11827	12127	14039	14039		
MELGELLYNK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELGELLYNK_			1	0	0	Q9BTE1	Q9BTE1	Q9BTE1	DCTN5	Dynactin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.318114	1250.62167	-0.27875	-0.00017459	2.3051	0.0014437	2.0264	0.0012692	626.320171533559	19.206	0.088668	19.206	19.171	19.259	0	540	49	0.963152256458504	0.0323345110128962	0.963152256458504	390.029978877131	0	13.0939096729465						159	11	3	NaN	NaN	NaN	0.002517	1	10934	58.916	51.269	1	33347			14040	2734	11828	12128	14040	14040		
MELIQDTSRPPLEYVK	16	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ELIQDTSRPPLEYVK_	M(1)ELIQDTSRPPLEYVK	M(62)ELIQDTSRPPLEYVK	1	1	1	P0DMN0;P0DMM9;P50225	P0DMN0	P0DMN0	SULT1A4;SULT1A3;SULT1A1	Sulfotransferase 1A4;Sulfotransferase 1A3;Sulfotransferase 1A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.003516	1975.99248	1.4389	0.0014231	-0.25554	-0.00025273	1.1834	0.0011704	989.504961503823	14.489	0.20395	14.489	14.373	14.577	0	129	31	1.23753038177212	0.0198395317796147	1.23753038177212	499.125783787753	0	8.00176059944658						354	24	4	NaN	NaN	NaN	0.00175	1	31218	62.398	52.819	1	66180			14041	617	11829	12129	14041	14041	171	
MELITILEK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELITILEK_			1	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.320125	1130.6257	0.070531	3.9943E-05	1.0023	0.00056761	1.0728	0.00060755	566.320801466035	20.235	0.079789	20.235	20.217	20.297	0	606	43	0.918606045818476	0.0283908138186021	0.918606045818476	372.42171321868	0	11.5102176500216						220	10	5	NaN	NaN	NaN	0.00062115	1	7555	96.311	67.209	1	202130			14042	1780	11830	12130	14042	14042		
MELITILEK	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ELITILEK_	M(1)ELITILEK	M(77)ELITILEK	1	1	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.317583	1146.62061	-0.03212	-1.8447E-05	0.44417	0.00025509	0.41205	0.00023665	574.317963724509	19.41	0.15077	19.41	19.366	19.516	0	603	46	0.920633820089869	0.0304250551653156	0.920633820089869	373.181088900201	0	12.3328678228797						258	18	3	NaN	NaN	NaN	0.0040012	1	7977	76.605	63.777	1	83680			14043	1780	11830	12131	14043	14043	564	
MELLAHLLGEK	11	Unmodified	_MELLAHLLGEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.568924	1252.68494	-2.7456	-0.0011492	-0.21537	-9.0149E-05	-2.9609	-0.0012394	418.568900345639	14.755	0.1419	14.755	14.71	14.852	1.7764E-15	807	25	0.782101955086014	0.0163750277383129	0.782101955086014	475.057381237067	0	9.9463730329017						269	17	4	NaN	NaN	NaN	0.045843	1	10998	27.589	23.049	1	97891			14044	3345	11831	12132	14044	14044		
MELLAHLLGEK	11	Unmodified	_MELLAHLLGEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.349748	1252.68494	0.39346	0.00024684	0.42118	0.00026422	0.81463	0.00051106	627.349963440947	14.755	0.19508	14.755	14.701	14.897	1.7764E-15	528	58	0.971237000454584	0.0384105216790265	0.971237000454584	393.296842610018	0	15.5541200472121						485	23	4	NaN	NaN	NaN	0.00084114	1	11000	79.311	67.951	1	168360			14045	3345	11831	12132	14045	14045		
MELLGEYVGQEGK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELLGEYVGQEGK_			1	0	0	Q9BXV9	Q9BXV9	Q9BXV9	C14orf142	Uncharacterized protein C14orf142	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.860874	1493.7072	0.047486	3.5513E-05	1.5273	0.0011422	1.5748	0.0011777	747.862108404935	19.215	0.070939	19.215	19.188	19.259	0	402	28	1.05585747106793	0.0180816768665149	1.05585747106793	426.810410444837	0	7.30917584654901						193	9	4	NaN	NaN	NaN	2.2325E-07	1	18346	106	96.741	1	48952			14046	2788	11832	12133	14046	14046		
MELQEIQLK	9	Unmodified	_MELQEIQLK_			0	0	0	P06753	P06753	P06753	TPM3	Tropomyosin alpha-3 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.307549	1130.60055	1.865	0.0010562	-0.27249	-0.00015431	1.5925	0.00090186	566.307330892131	10.835	0.32811	10.835	10.755	11.083	0	585	79	0.932794566565362	0.0527112149665917	0.932794566565362	378.174137418572	0	21.3702126564423						1477	38	5	NaN	NaN	NaN	0.0010336	1	7550	106.93	0	1	1027600			14047	548	11833	12134	14047	14047		
MELQPPEASIAVVSIPR	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELQPPEASIAVVSIPR_			1	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.003319	1877.99208	0.3371	0.00031687	-0.075555	-7.1022E-05	0.26154	0.00024585	940.504914484042	18.931	0.14185	18.931	18.834	18.976	0	75	112	1.27319752866042	0.0733309610585131	1.27319752866042	513.698071917687	0	29.5869041995888						883	17	4	NaN	NaN	NaN	0.0031352	1	29109	59.67	55.934	1	189460			14048	576	11834	12135	14048	14048		
MELSAEYLR	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELSAEYLR_			1	0	0	Q9H3K6	Q9H3K6	Q9H3K6	BOLA2	BolA-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.281531	1152.54851	0.26963	0.00015565	-1.0084	-0.0005821	-0.73872	-0.00042645	577.281047237077	15.739	0.15076	15.739	15.677	15.828	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	382.191815559648	0	9.84725477915947						408	18	4	NaN	NaN	NaN	0.0012269	1	8124	77.072	54.685	1	133690			14049	2879	11835	12136	14049	14049		
MELSDANLQTLTEYLK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELSDANLQTLTEYLK_			1	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.974424	1909.93429	1.1136	0.0010646	0.39786	0.00038034	1.5115	0.0014449	956.476662875284	20.111	0.035472	20.111	20.111	20.146	0	159	73	1.21767724410157	0.0476802448449405	1.21767724410157	491.236996878551	0	19.2352287123045						222	5	4	NaN	NaN	NaN	9.8179E-18	1	29839	187.51	166.15	1	100230			14050	1264	11836	12137	14050	14050		
MELSDANLQTLTEYLK	16	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ELSDANLQTLTEYLK_	M(1)ELSDANLQTLTEYLK	M(130)ELSDANLQTLTEYLK	1	1	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.971881	1925.92921	1.7046	0.0016432	-1.1762	-0.0011338	0.52847	0.00050943	963.970996382275	19.756	0.062052	19.756	19.738	19.8	0	198	79	1.1918274123006	0.0517387417223738	1.1918274123006	480.779826766219	0	20.8712629241918						399	8	5	NaN	NaN	NaN	4.9506E-09	1	30183	130.65	127.57	1	113240			14051	1264	11836	12138	14051	14051	448	
MELVQVLK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MELVQVLK_			1	0	0	Q9UI09	Q9UI09	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.288628	1000.5627	-1.2379	-0.00062055	0.091101	4.5668E-05	-1.1468	-0.00057488	501.288677510965	19.02	0.079777	19.02	18.984	19.064	0	690	28	0.86171403876517	0.0183235429829339	0.86171403876517	349.903041988051	0	7.44036088690746						162	10	3	NaN	NaN	NaN	0.0021065	1	4303	65.313	51.665	1	44919			14052	3229	11837	12139	14052	14052		
MEMINVSGYVAQEK	14	Unmodified	_MEMINVSGYVAQEK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.881284	1597.74801	1.2952	0.001036	2.0701	0.0016558	3.3653	0.0026919	799.882785886868	12.183	0.14189	12.183	12.148	12.29	0	378	43	1.07192009927972	0.0280979774914514	1.07192009927972	433.044305035699	0	11.3512836860419						392	17	4	NaN	NaN	NaN	0.0017547	1	21500	36.46	31.932	1	74339			14053	990	11838	12140	14053	14053		
MENMAEEELLPLEK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MENMAEEELLPLEK_			1	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.404789	1716.79502	1.3987	0.0012021	0.60107	0.00051657	1.9998	0.0017187	859.404807297917	18.781	0.070962	18.781	18.754	18.825	0	273	28	1.14198628764525	0.0179724190816779	1.14198628764525	461.07526729546	0	7.2563375074472						162	9	4	NaN	NaN	NaN	0.0010597	1	24957	72.327	71.275	1	33038			14054	2128	11839	12141	14054	14054		
MENQVLQEAR	10	Unmodified	_MENQVLQEAR_			0	0	0	Q9Y6D5	Q9Y6D5	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.300787	1216.58702	1.0702	0.00065207	2.2227	0.0013543	3.2929	0.0020064	609.302385554148	5.4608	0.22166	5.4608	5.381	5.6026	0	552	49	0.955063035883597	0.0323792954262402	0.955063035883597	386.872359566571	0	13.116049885716						276	26	2	NaN	NaN	NaN	0.029892	1	9916	41.824	34.673	1	61299			14055	3459	11840	12142	14055	14055		
MENQVLTPHVYWAQR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MENQVLTPHVYWAQR_			1	0	0	Q9P035	Q9P035	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.469977	1912.9254	2.1224	0.0020321	0.67674	0.00064795	2.7991	0.0026801	957.470531329904	14.489	0.20394	14.489	14.391	14.595	0	222	55	1.17589687683038	0.0358634154604045	1.17589687683038	474.376553834092	0	14.4679042610308						714	24	4	NaN	NaN	NaN	0.00011783	1	29905	75.5	73.79	1	210360			14056	3143	11841	12143	14056	14056		
MEQEVENFSCSR	12	Unmodified	_MEQEVENFSCSR_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.313765	1514.61298	1.8408	0.0013959	-0.34328	-0.00026032	1.4975	0.0011356	758.313753629379	6.1968	0.079802	6.1968	6.1702	6.25	0	459	28	1.01763759082241	0.0181291645901349	1.01763759082241	411.308626689421	0	7.32744334313429						170	10	4	NaN	NaN	NaN	0.00065756	1	18947	90.689	87.344	1	41711			14057	2080	11842	12144	14057	14057		
MEQQQLEEQK	10	Unmodified	_MEQQQLEEQK_			0	0	0	Q9NRZ9	Q9NRZ9	Q9NRZ9	HELLS	Lymphoid-specific helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.803359	1289.59217	2.129	0.0013749	-1.0333	-0.00066729	1.0958	0.00070766	645.802969874806	3.1198	0.062074	3.1198	3.0932	3.1552	0	564	25	0.946969335010767	0.0161918857668037	0.946969335010767	383.350126605211	0	6.55476500578635						78	8	2	NaN	NaN	NaN	0.026977	1	12042	34.781	16.444	1	14312			14058	3032	11843	12145	14058	14058		
MESAGLEQLLR	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MESAGLEQLLR_			1	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.83192	1287.64929	0.92683	0.00059765	-0.20616	-0.00013294	0.72066	0.00046471	644.831918946021	18.355	0.088662	18.355	18.319	18.408	0	462	31	1.01562323939346	0.0201476911078267	1.01562323939346	411.149025833123	0	8.15627611742786						210	11	4	NaN	NaN	NaN	4.4821E-08	1	11991	127.94	115.99	1	61395			14059	2356	11845	12146	14059	14059		
MESALDQLK	9	Unmodified	_MESALDQLK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.762975	1033.5114	1.1126	0.00057606	0.51704	0.00026771	1.6296	0.00084377	517.762402550455	7.8108	0.28371	7.8108	7.6956	7.9793	0	678	58	0.869855008346864	0.0386830482418505	0.869855008346864	353.055944083206	0	15.7006397456951						468	33	2	NaN	NaN	NaN	0.0072537	1	5087	74.486	42.358	1	249570			14060	1002	11846	12147	14060	14060		
MESGSTAASEEAR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MESGSTAASEEAR_			1	0	0	P10644	P10644	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.290813	1366.56707	1.9732	0.0013503	-0.96138	-0.00065787	1.0118	0.0006924	684.290183413851	5.3278	0.10638	5.3278	5.2923	5.3987	0	423	37	1.04178812298108	0.0241338680851122	1.04178812298108	421.482622097238	0	9.76398729979252						265	13	4	NaN	NaN	NaN	1.9232E-05	1	14383	122.51	104.17	1	66222			14061	633	11847	12148	14061	14061		
MESYHKPDQQK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MESYHKPDQQK_			1	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.222364	1431.64526	0.56348	0.00026947	0.35515	0.00016984	0.91863	0.00043931	478.222742353082	3.0311	0.48766	3.0311	2.9424	3.4301	0	837	49	0.761618911097395	0.0327911445371991	0.761618911097395	461.985683146817	0	19.8905766249372						1246	56	5	NaN	NaN	NaN	0.0008061	1	16435	98.009	91.746	1	587280			14062	888	11848	12149	14062	14062		
MESYHKPDQQK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MESYHKPDQQK_			1	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.829908	1431.64526	3.3154	0.0023766	-2.0198	-0.0014479	1.2955	0.00092869	716.828834801303	3.0311	0.28377	3.0311	2.969	3.2528	0	477	79	1.0055473068722	0.0524202357798278	1.0055473068722	406.635207185753	0	21.1983198516641						783	33	4	NaN	NaN	NaN	0.0064364	1	16437	47.334	43.132	1	175540			14063	888	11848	12149	14063	14063		
MESYHKPDQQK	11	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))ESYHKPDQQK_	M(1)ESYHKPDQQK	M(40)ESYHKPDQQK	1	1	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.554003	1447.64018	-0.88667	-0.00042875	1.3801	0.00066734	0.49341	0.00023859	483.554455315426	1.9403	0.14198	1.9403	1.9049	2.0468	0	846	13	0.755468431110051	0.008202354552858	0.755468431110051	458.206509895553	0	4.97488988000282						86	17	2	NaN	NaN	NaN	0.050155	1	16906	40.386	40.386	1	17395			14064	888	11848	12150	14064	14064	302	
MEVDYSATVDQR	12	Unmodified	_MEVDYSATVDQR_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.319373	1412.62419	2.1141	0.0014954	1.9327	0.001367	4.0468	0.0028624	707.321529091111	7.3319	0.2926	7.3319	7.2698	7.5624	0	504	64	0.987393073566096	0.0423774677017295	0.987393073566096	399.345211244787	0	17.1393128475632						870	34	5	NaN	NaN	NaN	0.0012216	1	15831	92.428	81.726	1	273660			14065	64	11849	12151	14065	14065		
MEVGPTMVGDEQSDPELMQHLGASK	25	Unmodified	_MEVGPTMVGDEQSDPELMQHLGASK_			0	0	0	P30047	P30047	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.076756	2685.20844	1.6442	0.0014733	-0.19539	-0.00017508	1.4488	0.0012983	896.411239389456	12.68	0.088663	12.68	12.644	12.733	0	477	58	1.0055473068722	0.0383097280775055	1.0055473068722	607.218886287341	0	23.1340586944164						583	11	5	NaN	NaN	NaN	2.7823E-13	1	37561	100.23	99.423	1	138450			14066	897	11850	12152	14066	14066		
MEVMNLMEQPIK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MEVMNLMEQPIK_			1	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.864048	1503.71354	1.1472	0.00086368	-0.33519	-0.00025235	0.812	0.00061133	752.864137440596	19.8	0.044354	19.8	19.782	19.827	0	384	52	1.06790610341098	0.0341448654745873	1.06790610341098	431.6544782506	0	13.8015730449457						199	6	3	NaN	NaN	NaN	0.00029403	1	18622	50.09	48.446	1	46045			14067	706	11851	12153	14067	14067		
MEVQEQEEDISSLIR	15	Unmodified	_MEVQEQEEDISSLIR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.432923	1804.85129	1.5494	0.0013998	1.2559	0.0011346	2.8053	0.0025344	903.434107549871	13.682	0.079782	13.682	13.646	13.726	0	315	40	1.11400032671325	0.0260066420921716	1.11400032671325	449.600181648367	0	10.4960391198468						284	10	4	NaN	NaN	NaN	1.0179E-17	1	27346	180.17	168.15	1	93896			14068	1465	11852	12154	14068	14068		
MEVQEQEEDISSLIR	15	Oxidation (M)	_M(Oxidation (M))EVQEQEEDISSLIR_	M(1)EVQEQEEDISSLIR	M(90)EVQEQEEDISSLIR	0	1	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.43038	1820.84621	1.4816	0.0013504	0.42068	0.00038342	1.9023	0.0017338	911.431679826355	12.307	0.16848	12.307	12.254	12.423	0	309	31	1.11800162319566	0.0200037307887677	1.11800162319566	451.184846415002	0	8.0727791591745						251	20	4	NaN	NaN	NaN	5.3274E-05	1	27741	90.156	75.181	1	49913			14069	1465	11852	12155	14069	14069	525	
MEYDGILIAGGPGNPALAEPLIQNVR	26	Unmodified	_MEYDGILIAGGPGNPALAEPLIQNVR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1354.70744	2707.40034	0.84477	0.0011444	-0.64775	-0.00087752	0.19702	0.0002669	1355.2082887319	18.355	0.04433	18.355	18.337	18.381	0	66	28	1.27913350869533	0.0178079416067196	1.27913350869533	514.931987053506	0	7.16882068567963						142	6	4	NaN	NaN	NaN	0.013389	1	37627	32.113	28.354	1	23225			14070	922	11853	12156	14070	14070		
MEYDGILIAGGPGNPALAEPLIQNVR	26	Unmodified	_MEYDGILIAGGPGNPALAEPLIQNVR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	903.474055	2707.40034	1.9406	0.0017533	-0.5859	-0.00052935	1.3547	0.0012239	903.808260131638	18.355	0.20397	18.355	18.293	18.497	0	270	313	1.14398322290989	0.20829942495783	1.14398322290989	690.786884001216	0	125.780263053034						2140	24	7	NaN	NaN	NaN	1.8303E-14	1	37628	142.02	138.79	1	924120			14071	922	11853	12156	14071	14071		
MEYDGILIAGGPGNPALAEPLIQNVR	26	Oxidation (M)	_M(Oxidation (M))EYDGILIAGGPGNPALAEPLIQNVR_	M(1)EYDGILIAGGPGNPALAEPLIQNVR	M(77)EYDGILIAGGPGNPALAEPLIQNVR	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	908.805693	2723.39525	1.6552	0.0015042	-0.93008	-0.00084526	0.72511	0.00065899	909.472448391006	17.716	0.11528	17.716	17.672	17.787	0	285	73	1.13399579921816	0.0479693534210168	1.13399579921816	684.735496067114	0	28.9651152441701						719	14	5	NaN	NaN	NaN	0.00097303	1	37672	77.478	75.639	1	203570			14072	922	11853	12157	14072	14072	315	
MFADDLHNLNK	11	Unmodified	_MFADDLHNLNK_			0	0	0	Q4U2R6	Q4U2R6	Q4U2R6	MRPL51	39S ribosomal protein L51, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.88005	1316.61832	-2.2965	-0.0010102	-0.54479	-0.00023964	-2.8412	-0.0012498	439.879761102395	8.1479	0.097543	8.1479	8.1124	8.21	0	837	25	0.761618911097395	0.0163978531356664	0.761618911097395	462.371145984223	0	9.95497096454						161	12	3	NaN	NaN	NaN	0.0045894	1	12866	60.892	39.617	1	33563			14073	1943	11854	12158	14073	14073		
MFADYLAHESR	11	Unmodified	_MFADYLAHESR_			0	0	0	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.208167	1338.60267	-0.34582	-0.00015465	-0.85476	-0.00038226	-1.2006	-0.00053691	447.207822024291	8.7955	0.16872	8.7955	8.7511	8.9198	0	732	31	0.833184998970724	0.0203977162825675	0.833184998970724	505.732043181408	0	12.3811383360971						322	20	4	NaN	NaN	NaN	0.00015802	1	13542	123.5	92.911	1	137150			14074	106	11855	12159	14074	14074		
MFADYLAHESR	11	Unmodified	_MFADYLAHESR_			0	0	0	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.308612	1338.60267	1.3373	0.00089638	1.2864	0.00086232	2.6237	0.0017587	670.309783092015	8.7955	0.11537	8.7955	8.7599	8.8753	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.982876523198	0	8.15185387403						228	14	3	NaN	NaN	NaN	0.00077909	1	13546	83.358	74.381	1	52112			14075	106	11855	12159	14075	14075		
MFDMGFEPQVMR	12	Unmodified	_MFDMGFEPQVMR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.327633	1486.64071	0.8299	0.00061772	0.58009	0.00043177	1.41	0.0010495	744.328623711784	15.109	0.11527	15.109	15.065	15.18	0	453	49	1.02166545906632	0.0322051603576423	1.02166545906632	413.006960344506	0	13.0188950489456						353	14	4	NaN	NaN	NaN	2.5228E-05	1	18119	109.88	108.37	1	81318			14076	2110	11856	12160	14076	14076		
MFDYTDDPEGPVMPGSHSVER	21	Unmodified	_MFDYTDDPEGPVMPGSHSVER_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.340309	2364.9991	1.5889	0.0012542	0.7827	0.00061782	2.3716	0.001872	789.675218417116	10.755	0.12414	10.755	10.702	10.826	0	552	49	0.955063035883597	0.0323703311033066	0.955063035883597	577.135006845322	0	19.5610661924613						568	15	6	NaN	NaN	NaN	6.2621E-09	1	36173	99.909	97.362	1	194220			14077	1583	11857	12161	14077	14077		
MFEDSQDSCR	10	Unmodified	_MFEDSQDSCR_			0	0	0	P23497	P23497	P23497	SP100	Nuclear autoantigen Sp-100	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.742444	1273.47034	2.4798	0.0015815	1.6654	0.0010621	4.1452	0.0026436	637.74398170577	3.7938	0.070938	3.7938	3.7849	3.8558	0	597	22	0.924688525662974	0.0141904869950359	0.924688525662974	374.38066274327	0	5.74533345922327						64	9	2	NaN	NaN	NaN	0.060743	1	11582	29.755	27.596	1	12749			14078	821	11858	12162	14078	14078		
MFEFYER	7	Unmodified	_MFEFYER_			0	0	0	O75306	O75306	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.226028	1020.4375	0.26763	0.00013682	-1.0001	-0.00051129	-0.7325	-0.00037447	511.22540477135	10.738	0.17737	10.738	10.693	10.871	0	684	37	0.86578508874114	0.024426303976944	0.86578508874114	351.463227722318	0	9.9157952114258						273	21	2	NaN	NaN	NaN	0.0098096	1	4738	73.637	60.085	1	128260			14079	316	11859	12163	14079	14079		
MFEIVFEDPK	10	Unmodified	_MFEIVFEDPK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.807382	1253.60021	1.0037	0.00063012	0.30839	0.00019361	1.3121	0.00082373	627.80774517852	14.985	0.18623	14.985	14.914	15.101	0	513	40	0.981336640919867	0.0262518066023084	0.981336640919867	397.383471374506	0	10.6304336376342						678	22	5	NaN	NaN	NaN	5.4564E-05	1	11023	95.311	86.548	1	439740			14080	565	11860	12164	14080	14080		
MFESFIESVPLLK	13	Unmodified	_MFESFIESVPLLK_			0	0	0	P13861	P13861	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.410003	1538.80545	0.89381	0.0006886	-1.8617	-0.0014342	-0.96786	-0.00074565	770.409765163471	19.339	0.21283	19.339	19.242	19.454	0	420	37	1.04379886199097	0.0241305373401517	1.04379886199097	421.822421300133	0	9.75168881548768						349	25	3	NaN	NaN	NaN	5.4578E-05	1	19697	81.335	78.664	1	110780			14081	687	11861	12165	14081	14081		
MFFDALYDEDVVK	13	Unmodified	_MFFDALYDEDVVK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.371075	1590.7276	1.3066	0.0010405	1.6145	0.0012857	2.921	0.0023262	796.372277878537	17.167	0.20394	17.167	17.114	17.317	0	372	88	1.07593298845566	0.0581348437108529	1.07593298845566	434.681956838428	0	23.4867486134068						963	24	3	NaN	NaN	NaN	1.8276E-07	1	21291	122.51	111.72	1	553980			14082	1544	11862	12166	14082	14082		
MFFLFPDPHFK	11	Unmodified	_MFFLFPDPHFK_			0	0	0	Q9UBP6	Q9UBP6	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.905648	1424.69511	-2.5584	-0.0012175	1.1427	0.00054383	-1.4156	-0.00067371	475.906133756917	17.513	0.088704	17.513	17.45	17.539	0	774	22	0.804600385996946	0.0143072230251827	0.804600385996946	488.080296181576	0	8.67893400649393						107	11	2	NaN	NaN	NaN	0.038994	1	16220	13.995	10.387	1	22431			14083	3182	11863	12167	14083	14083		
MFGIPVVVAVNAFK	14	Unmodified	_MFGIPVVVAVNAFK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.423248	1490.83194	0.28362	0.0002117	0.33304	0.00024859	0.61666	0.00046029	746.424232215724	19.268	0.1596	19.268	19.179	19.339	0	423	43	1.04178812298108	0.0281561811759454	1.04178812298108	421.130603002603	0	11.3818052781658						539	19	4	NaN	NaN	NaN	0.0022179	1	18270	65.404	56.427	1	163730			14084	656	11864	12168	14084	14084		
MFGIPVVVAVNAFK	14	Unmodified	_MFGIPVVVAVNAFK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.423248	1490.83194	-0.10855	-8.1026E-05	2.1895	0.0016343	2.081	0.0015533	746.425538240874	19.242	0.044358	19.242	19.233	19.277	0	285	13	1.13399579921816	0.00799268722914115	1.13399579921816	458.404464427359	0	3.23094980698863						39	6	2	NaN	NaN	NaN	0.0070056	1	18271	43.272	40.17	1	6183.6			14085	656	11864	12168	14085	14085		
MFGMVLEK	8	Unmodified	_MFGMVLEK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.742999	953.471446	-0.88508	-0.00042284	-3.0266	-0.0014459	-3.9117	-0.0018688	477.742359303226	11.633	0.19515	11.633	11.553	11.749	0	726	40	0.837263974740672	0.0265078208425806	0.837263974740672	340.20264322047	0	10.7708333198664						611	23	4	NaN	NaN	NaN	0.020524	1	3308	47.349	37.27	1	302100			14086	1264	11865	12169	14086	14086		
MFIGGLSWDTSK	12	Unmodified	_MFIGGLSWDTSK_			0	0	0	O14979	O14979	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.329013	1340.64347	0.30326	0.00020359	1.8268	0.0012264	2.1301	0.00143	671.330547262938	14.817	0.34584	14.817	14.666	15.012	0	507	76	0.985374541851584	0.050498238560425	0.985374541851584	398.736210554454	0	20.4343378360708						1511	40	6	NaN	NaN	NaN	3.5798E-05	1	13611	111.61	94.211	1	936140			14087	134	11866	12170	14087	14087		
MFIGGLSWDTTK	12	Unmodified	_MFIGGLSWDTTK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.336838	1354.65912	1.1613	0.00078772	0.67786	0.00045982	1.8391	0.0012475	678.337758070753	14.923	0.3813	14.923	14.817	15.198	0	495	55	0.993446994398923	0.0363210277631717	0.993446994398923	401.960327637219	0	14.6959146306929						1205	44	6	NaN	NaN	NaN	4.6262E-05	1	14035	111.61	91.424	1	1316800			14088	1717	11867	12171	14088	14088		
MFIGGLSWDTTK	12	Oxidation (M)	_M(Oxidation (M))FIGGLSWDTTK_	M(1)FIGGLSWDTTK	M(64)FIGGLSWDTTK	0	1	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.334295	1370.65404	0.86334	0.00059254	0.1623	0.00011139	1.0256	0.00070393	686.335188182501	13.167	0.26607	13.167	13.096	13.363	0	501	43	0.98941132619024	0.0282614045260448	0.98941132619024	400.280261886759	0	11.4335485207471						530	31	4	NaN	NaN	NaN	0.048081	1	14507	64.064	48.916	1	195960			14089	1717	11867	12172	14089	14089	559	
MFIGGLSWQTSPDSLR	16	Unmodified	_MFIGGLSWQTSPDSLR_			0	0	0	Q96DH6	Q96DH6	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.945804	1793.87705	1.6126	0.001448	2.8345	0.0025452	4.4471	0.0039932	898.450400685149	16.023	0.15072	16.023	15.97	16.12	0	300	76	1.12400150285141	0.0499646417940307	1.12400150285141	453.657718128542	0	20.1662055841454						712	18	5	NaN	NaN	NaN	3.0627E-06	1	27075	96.313	79.553	1	156120			14090	2505	11868	12173	14090	14090		
MFILSDGEGK	10	Unmodified	_MFILSDGEGK_			0	0	0	P35244	P35244	P35244	RPA3	Replication protein A 14 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.7708	1095.52705	0.29826	0.00016368	3.6332	0.0019938	3.9314	0.0021575	548.772811741565	10.268	0.23941	10.268	10.188	10.427	0	630	46	0.902373728295776	0.0304545980014471	0.902373728295776	365.981946758272	0	12.3516816977376						804	28	5	NaN	NaN	NaN	0.0015105	1	6593	86.205	55.644	1	237880			14091	963	11869	12174	14091	14091		
MFLGDNAHLSIINEYLSQSYQK	22	Unmodified	_MFLGDNAHLSIINEYLSQSYQK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.756451	2570.24752	0.7756	0.00066528	-0.056398	-4.8375E-05	0.71921	0.0006169	858.090603153177	17.14	0.14185	17.14	17.087	17.229	0	495	49	0.993446994398923	0.0322853553889811	0.993446994398923	600.050069532761	0	19.500617401102						671	17	5	NaN	NaN	NaN	1.3584E-11	1	37112	149.14	137.66	1	269210			14092	1095	11870	12175	14092	14092		
MFLGDNAHLSIINEYLSQSYQK	22	Oxidation (M)	_M(Oxidation (M))FLGDNAHLSIINEYLSQSYQK_	M(1)FLGDNAHLSIINEYLSQSYQK	M(76)FLGDNAHLSIINEYLSQSYQK	0	1	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.088089	2586.24244	0.91853	0.00079277	-0.34295	-0.000296	0.57558	0.00049677	863.422270226845	16.218	0.079809	16.218	16.182	16.262	0	483	37	1.00151498427745	0.0242006280672292	1.00151498427745	604.903080462331	0	14.6168901082908						261	10	4	NaN	NaN	NaN	2.0292E-06	1	37182	76.23	70.9	1	52909			14093	1095	11870	12176	14093	14093	389	
MFLQYYLNEQGDR	13	Unmodified	_MFLQYYLNEQGDR_			0	0	0	Q9NPE3	Q9NPE3	Q9NPE3	NOP10	H/ACA ribonucleoprotein complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.890497	1675.76644	2.1972	0.0018433	1.523	0.0012776	3.7202	0.0031209	838.892046491568	14.4	0.1596	14.4	14.347	14.506	0	357	37	1.08596037261705	0.0240574350512286	1.08596037261705	438.540848726935	0	9.71505798147507						401	19	5	NaN	NaN	NaN	1.5144E-07	1	23782	115.41	85.657	1	101820			14094	2987	11871	12177	14094	14094		
MFLSFPTTK	9	Unmodified	_MFLSFPTTK_			0	0	0	CON__P01966;P69905	CON__P01966;P69905	CON__P01966	HBA1	Hemoglobin subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.280803	1070.54705	0.41988	0.00022518	-1.272	-0.00068214	-0.85211	-0.00045697	536.280490201001	13.363	0.204	13.363	13.3	13.504	0	660	64	0.882057989648486	0.0426956385546063	0.882057989648486	357.846042711838	0	17.3213841687547						996	24	5	NaN	NaN	NaN	6.536E-05	1	5972	102.46	94.282	1	900480		+	14095	25;1453	11872	12178	14095	14095		
MFLVNSFLK	9	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))FLVNSFLK_	M(1)FLVNSFLK	M(44)FLVNSFLK	1	1	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.807185	1155.59982	-0.58792	-0.00034029	-0.87341	-0.00050554	-1.4613	-0.00084583	578.806531712993	19.96	0.062081	19.96	19.907	19.969	0	597	28	0.924688525662974	0.0182474411105494	0.924688525662974	374.79006844036	0	7.3959603832879						92	8	3	NaN	NaN	NaN	0.00835	1	8218	43.734	31.181	1	23190			14096	515	11873	12179	14096	14096	98	
MFLYADNEDR	10	Unmodified	_MFLYADNEDR_			0	0	0	Q9NP79	Q9NP79	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.27952	1272.54449	1.3768	0.00087742	0.10676	6.8038E-05	1.4836	0.00094546	637.279415756831	9.0972	0.1863	9.0972	9.044	9.2303	0	528	31	0.971237000454584	0.020206269780618	0.971237000454584	393.2299213252	0	8.18102056695659						295	22	4	NaN	NaN	NaN	0.0014208	1	11556	79.059	68.357	1	68433			14097	2979	11874	12180	14097	14097		
MFLYNLTLQR	10	Unmodified	_MFLYNLTLQR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.849916	1297.68528	0.97504	0.00063363	0.9322	0.00060579	1.9072	0.0012394	649.850741807972	15.101	0.14189	15.101	15.056	15.198	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.321779883203	0	9.80161764290239						299	17	3	NaN	NaN	NaN	5.3329E-05	1	12295	118.06	99.656	1	106240			14098	1841	11875	12181	14098	14098		
MFNYAGWK	8	Unmodified	_MFNYAGWK_			0	0	0	Q96G23	Q96G23	Q96G23	CERS2	Ceramide synthase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.736563	1015.45857	-0.46286	-0.00023548	-0.86555	-0.00044034	-1.3284	-0.00067581	508.735951461512	10.383	0.12412	10.383	10.339	10.463	0	729	43	0.835224628594324	0.0285568061062612	0.835224628594324	339.079409102026	0	11.5933182629548						265	15	3	NaN	NaN	NaN	0.055113	1	4635	33.813	23.734	1	97196			14099	2534	11876	12182	14099	14099		
MFSEADACELWIDEK	15	Unmodified	_MFSEADACELWIDEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.397495	1842.78044	1.0959	0.0010109	1.332	0.0012287	2.4279	0.0022395	922.398753566042	14.79	0.11531	14.79	14.746	14.861	0	294	37	1.12800004657306	0.0239879650368882	1.12800004657306	455.17888251849	0	9.67980023808985						334	14	4	NaN	NaN	NaN	1.344E-06	1	28295	117.21	111.18	1	73936			14100	1511	11877	12183	14100	14100		
MFSFNMFDHPIPR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MFSFNMFDHPIPR_			1	0	0	Q92890	Q92890	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.886703	1679.75885	1.1901	0.0010008	0.86679	0.00072888	2.0569	0.0017297	840.887575407291	19.366	0.079893	19.366	19.321	19.401	0	261	61	1.14997238118939	0.039924995069111	1.14997238118939	464.381619191989	0	16.1225036006953						285	10	4	NaN	NaN	NaN	3.466E-06	1	23900	103.69	96.546	1	58752			14101	2440	11878	12184	14101	14101		
MFTEDQGVDDR	11	Unmodified	_MFTEDQGVDDR_			0	0	0	P23497	P23497	P23497	SP100	Nuclear autoantigen Sp-100	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.777341	1311.54013	1.7636	0.0011583	3.7572	0.0024676	5.5208	0.0036259	656.780339105185	5.6647	0.062114	5.6647	5.6292	5.6913	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	388.195274191497	0	6.54816080182229						85	8	3	NaN	NaN	NaN	0.00061628	1	12694	57.888	43.893	1	20908			14102	821	11879	12185	14102	14102		
MFVDLNPDSDK	11	Unmodified	_MFVDLNPDSDK_			0	0	0	P29992;P50148	P29992	P29992	GNA11;GNAQ	Guanine nucleotide-binding protein subunit alpha-11;Guanine nucleotide-binding protein G(q) subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.795003	1279.57545	1.4955	0.00095829	2.6981	0.0017289	4.1936	0.0026872	640.796952332158	10.809	0.15961	10.809	10.729	10.888	0	540	34	0.963152256458504	0.0222407417065758	0.963152256458504	389.933591605179	0	9.00419662151501						281	19	3	NaN	NaN	NaN	0.017825	1	11734	51.872	35.993	1	63993			14103	891	11880	12186	14103	14103		
MFVGGLSWDTSK	12	Unmodified	_MFVGGLSWDTSK_			0	0	0	Q99729	Q99729	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.321188	1326.62782	1.7534	0.0011649	0.89874	0.00059705	2.6522	0.0017619	664.32202122713	13.558	0.33693	13.558	13.442	13.779	0	516	52	0.979317271586824	0.0343292904819641	0.979317271586824	396.327828937966	0	13.8929982758823						1004	39	7	NaN	NaN	NaN	0.00059456	1	13177	99.34	83.759	1	935690			14104	2669	11881	12187	14104	14104		
MFVGGLSWDTSK	12	Oxidation (M)	_M(Oxidation (M))FVGGLSWDTSK_	M(1)FVGGLSWDTSK	M(99)FVGGLSWDTSK	0	1	0	Q99729	Q99729	Q99729	HNRNPAB	Heterogeneous nuclear ribonucleoprotein A/B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.318645	1342.62274	0.66986	0.00045036	1.3088	0.00087993	1.9787	0.0013303	672.319606563299	11.722	0.16847	11.722	11.66	11.828	0	522	40	0.975277694896658	0.0262627024268471	0.975277694896658	394.644542106139	0	10.6271600672782						431	20	3	NaN	NaN	NaN	8.8754E-05	1	13684	99.34	91.694	1	134280			14105	2669	11881	12188	14105	14105	618	
MFVGQVPR	8	Unmodified	_MFVGQVPR_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.25238	932.490207	-0.44264	-0.00020683	-0.325	-0.00015186	-0.76765	-0.00035868	467.252225979513	7.261	0.19507	7.261	7.2077	7.4028	0	741	34	0.827064408645228	0.0224515301209383	0.827064408645228	336.16571273054	0	9.1255705675444						355	23	3	NaN	NaN	NaN	0.0011973	1	2918	96.666	86.587	1	97112			14106	2437	11882	12189	14106	14106		
MFVLDEADEMLSR	13	Oxidation (M)	_M(Oxidation (M))FVLDEADEMLSR_	M(1)FVLDEADEMLSR	M(120)FVLDEADEM(-120)LSR	0	1	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.357641	1570.70073	1.8032	0.0014179	0.021504	1.691E-05	1.8247	0.0014348	786.358021939851	15.171	0.20393	15.171	15.118	15.322	0	414	43	1.04781950764076	0.0281406425229616	1.04781950764076	423.370568291511	0	11.3702023393891						782	24	6	NaN	NaN	NaN	1.2628E-07	1	20672	122.51	117.01	2	467360			14107	1311;1739	11883	12190	14107	14107	474;475	
MFVLDEADEMLSR	13	Oxidation (M)	_MFVLDEADEM(Oxidation (M))LSR_	MFVLDEADEM(1)LSR	M(-100)FVLDEADEM(100)LSR	0	1	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.357641	1570.70073	2.422	0.0019045	1.3634	0.0010722	3.7854	0.0029767	786.358987851162	13.531	0.070948	13.531	13.504	13.575	0	417	37	1.04580932352505	0.0241272072846639	1.04580932352505	422.558350171635	0	9.74857717857441						282	9	4	NaN	NaN	NaN	3.0587E-06	1	20673	103.69	96.129	2	217030			14108	1311;1739	11883	12190	14108	14108	474;475	
MFYEEHLHLDDEIR	14	Unmodified	_MFYEEHLHLDDEIR_			0	0	0	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	462.466172	1845.83558	-0.82239	-0.00038033	-0.58015	-0.0002683	-1.4025	-0.00064863	462.716651580847	10.8	0.17734	10.8	10.755	10.933	0	753	22	0.81889964927511	0.0142932978262608	0.81889964927511	660.883292616861	0	11.5352372395499						320	21	4	NaN	NaN	NaN	0.0010748	1	28373	50.09	49.208	1	96616			14109	2757	11884	12191	14109	14109		
MGAGLGHGMDR	11	Unmodified	_MGAGLGHGMDR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	367.835787	1100.48553	0.14859	5.4658E-05	-0.35274	-0.00012975	-0.20414	-7.5091E-05	367.836012581864	3.6164	0.19504	3.6164	3.581	3.776	0	879	40	0.732894652678068	0.0266929880015073	0.732894652678068	445.837745817838	0	16.2379975843024						468	23	4	NaN	NaN	NaN	0.0048493	1	6721	46.033	45.143	1	202400			14110	1206	11885	12192	14110	14110		
MGAGLGHGMDR	11	Unmodified	_MGAGLGHGMDR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.250043	1100.48553	1.5213	0.00083859	1.2259	0.0006758	2.7472	0.0015144	551.251035936224	3.6164	0.21284	3.6164	3.581	3.7938	0	633	31	0.900343422309015	0.0203044701825483	0.900343422309015	365.138074742234	0	8.23456357586645						359	25	3	NaN	NaN	NaN	0.0021097	1	6722	76.572	72.032	1	134100			14111	1206	11885	12192	14111	14111		
MGAGMGFGLER	11	Unmodified	_MGAGMGFGLER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.262619	1124.51068	1.044	0.00058803	0.17399	9.8003E-05	1.218	0.00068603	563.263145845912	10.152	0.31922	10.152	10.09	10.41	0	627	46	0.90440375274676	0.0304461528019007	0.90440375274676	366.687834630121	0	12.3443028734013						808	37	4	NaN	NaN	NaN	0.0023408	1	7380	83.358	73.965	1	551810			14112	1206	11886	12193	14112	14112		
MGANNLER	8	Unmodified	_MGANNLER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.718901	903.42325	0.38336	0.00017355	1.2042	0.00054518	1.5876	0.00071874	452.71969168441	3.0843	0.16848	3.0843	3.0488	3.2173	0	759	25	0.814815566123307	0.0163386061083168	0.814815566123307	331.341765419621	0	6.64403432813924						278	20	4	NaN	NaN	NaN	0.068587	1	2385	21.275	13.628	1	62918			14113	1206	11887	12194	14113	14113		
MGANSLER	8	Unmodified	_MGANSLER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.213452	876.412351	-1.5268	-0.00067058	1.4281	0.00062722	-0.098717	-4.3358E-05	439.214756038432	3.3149	0.32821	3.3149	3.2705	3.5987	0	792	37	0.792332785124922	0.0245488687614877	0.792332785124922	322.347852040474	0	9.98731248264755						586	38	3	NaN	NaN	NaN	0.0033158	1	1955	97.033	75.105	1	229580			14114	1206	11888	12195	14114	14114		
MGAVFMDAPVSGGVGAAR	18	Unmodified	_MGAVFMDAPVSGGVGAAR_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.913449	1691.81235	2.18	0.0018462	0.70204	0.00059457	2.882	0.0024408	846.913872756544	12.298	0.21283	12.298	12.236	12.449	0	348	58	1.09197348738011	0.0380935733737338	1.09197348738011	440.934811072064	0	15.3820424879603						670	25	6	NaN	NaN	NaN	1.3103E-06	1	24251	66.619	60.921	1	269520			14115	928	11889	12196	14115	14115		
MGAYHTIELEPNR	13	Unmodified	_MGAYHTIELEPNR_			0	0	0	Q9BRX2	Q9BRX2	Q9BRX2	PELO	Protein pelota homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.917164	1529.72966	-1.0425	-0.00053264	-2.0507	-0.0010477	-3.0932	-0.0015804	510.916045520191	7.261	0.10641	7.261	7.2077	7.3142	0	771	34	0.806643990516186	0.0224765256052036	0.806643990516186	488.997246661487	0	13.6255389796281						174	13	3	NaN	NaN	NaN	0.047615	1	19417	12.582	11.432	1	35097			14116	2716	11890	12197	14116	14116		
MGEEVIPLR	9	Unmodified	_MGEEVIPLR_			0	0	0	Q4G0J3	Q4G0J3	Q4G0J3	LARP7	La-related protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.281334	1042.54812	0.31308	0.00016352	-1.9641	-0.0010258	-1.651	-0.0008623	522.280513709684	9.7356	0.1951	9.7356	9.6026	9.7977	0	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	344.75260321951	0	9.09512028433727						186	23	3	NaN	NaN	NaN	7.1997E-05	1	5291	79.809	63.262	1	39037			14117	1940	11891	12198	14117	14117		
MGESDDSILR	10	Unmodified	_MGESDDSILR_			0	0	0	P63220	P63220	P63220	RPS21	40S ribosomal protein S21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.75842	1121.50229	1.2533	0.00070408	1.3024	0.00073163	2.5557	0.0014357	561.75953200236	6.6845	0.36353	6.6845	6.6313	6.9949	0	651	49	0.888155670855968	0.0325187199489114	0.888155670855968	360.111790456827	0	13.1850472258773						1022	42	5	NaN	NaN	NaN	0.001066	1	7296	93.467	67.011	1	913410			14118	1433	11892	12199	14118	14118		
MGESDDSILR	10	Oxidation (M)	_M(Oxidation (M))GESDDSILR_	M(1)GESDDSILR	M(49)GESDDSILR	0	1	0	P63220	P63220	P63220	RPS21	40S ribosomal protein S21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.755878	1137.4972	0.86295	0.00049167	4.148	0.0023633	5.0109	0.002855	569.756834311159	5.2923	0.17737	5.2923	5.1859	5.3632	8.8818E-16	648	40	0.890187667287968	0.0264086306406944	0.890187667287968	360.874042165907	0	10.7058203989821						366	21	4	NaN	NaN	NaN	0.026455	1	7722	49.16	39.767	1	106120			14119	1433	11892	12200	14119	14119	510	
MGFEPLAYR	9	Unmodified	_MGFEPLAYR_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.268227	1082.5219	0.50077	0.00027155	5.7365	0.0031107	6.2373	0.0033823	542.272676537836	11.394	0.21288	11.394	11.296	11.509	0	654	76	0.886123392477847	0.0508634397586644	0.886123392477847	359.444802063092	0	20.6321142083586						573	25	2	NaN	NaN	NaN	0.00073814	1	6267	72.492	55.097	1	211570			14120	939	11893	12201	14120	14120		
MGGDIANR	8	Unmodified	_MGGDIANR_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	417.200344	832.386136	-0.12378	-5.1643E-05	0.5115	0.0002134	0.38771	0.00016175	417.200604747639	2.6764	0.17738	2.6764	2.6409	2.8183	0	834	25	0.763668499782291	0.016395568449004	0.763668499782291	310.93946135354	0	6.67570971379837						261	21	3	NaN	NaN	NaN	0.036761	1	1342	30.562	22.558	1	59842			14121	3319	11894	12202	14121	14121		
MGGEEAEIR	9	Unmodified	_MGGEEAEIR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.229299	990.444045	1.315	0.00065254	2.6002	0.0012903	3.9152	0.0019428	496.230664779664	3.6962	0.24825	3.6962	3.6519	3.9002	0	708	43	0.849494101904619	0.0285171523419938	0.849494101904619	344.988861393128	0	11.581127984975						360	29	2	NaN	NaN	NaN	0.0011101	1	4054	84.368	47.799	1	259320			14122	1575	11895	12203	14122	14122		
MGGGGAMNMGDPYGSGGQK	19	Unmodified	_MGGGGAMNMGDPYGSGGQK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.363463	1770.71237	3.1618	0.0028025	-3.2932	-0.002919	-0.13134	-0.00011642	886.36154438594	6.9594	0.18623	6.9594	6.8974	7.0836	0	369	73	1.07793901817685	0.0481281586395639	1.07793901817685	435.110137762062	0	19.4269336045681						1255	22	6	NaN	NaN	NaN	6.2141E-20	1	26424	214.14	213.26	1	532700			14123	814	11896	12204	14123	14123		
MGGGGAMNMGDPYGSGGQK	19	Oxidation (M)	_MGGGGAM(Oxidation (M))NMGDPYGSGGQK_	M(0.036)GGGGAM(0.961)NM(0.003)GDPYGSGGQK	M(-14)GGGGAM(14)NM(-25)GDPYGSGGQK	0	1	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.360921	1786.70729	2.9317	0.002622	-4.1948	-0.0037516	-1.2631	-0.0011296	894.35622033716	4.9553	0.15959	4.9553	4.8489	5.0085	0	387	58	1.06589869032374	0.0381566484153506	1.06589869032374	430.220134951366	0	15.4008618075684						329	18	3	NaN	NaN	NaN	0.00013711	1	26875	61.067	60.26	3	77024			14124	814	11896	12205	14124	14124	272;273	
MGGGGAMNMGDPYGSGGQK	19	Oxidation (M)	_M(Oxidation (M))GGGGAMNMGDPYGSGGQK_	M(0.99)GGGGAM(0.009)NM(0.001)GDPYGSGGQK	M(20)GGGGAM(-20)NM(-32)GDPYGSGGQK	0	1	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.360921	1786.70729	2.9098	0.0026024	-2.1039	-0.0018816	0.8059	0.00072077	894.359394421834	5.9663	0.097586	5.9663	5.9041	6.0017	0	360	52	1.08395544855938	0.0340837206319853	1.08395544855938	437.508232326648	0	13.7569384282662						254	12	3	NaN	NaN	NaN	0.00012251	1	26876	61.067	60.878	3	49716			14125	814	11896	12205	14125	14125	272;273	
MGGMEGPFGGGMENMGR	17	Unmodified	_MGGMEGPFGGGMENMGR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.843852	1713.67315	1.9171	0.0016446	-0.43475	-0.00037295	1.4823	0.0012716	857.844096257168	12.13	0.29265	12.13	12.015	12.307	0	378	40	1.07192009927972	0.0260927771036219	1.07192009927972	432.792465846982	0	10.5350737905375						1117	34	5	NaN	NaN	NaN	9.1691E-07	1	24868	117.41	105.93	1	339890			14126	1206	11897	12206	14126	14126		
MGGMEGPFGGGMENMGR	17	Oxidation (M)	_MGGM(Oxidation (M))EGPFGGGMENMGR_	M(0.071)GGM(0.871)EGPFGGGM(0.053)ENM(0.005)GR	M(-11)GGM(11)EGPFGGGM(-12)ENM(-22)GR	0	1	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.84131	1729.66807	2.4091	0.0020859	-1.3912	-0.0012046	1.0178	0.00088129	865.840154169084	10.055	0.23052	10.055	9.9307	10.161	0	384	40	1.06790610341098	0.0260927771036219	1.06790610341098	431.139808404531	0	10.5342921866121						751	27	4	NaN	NaN	NaN	0.0045946	1	25310	62.454	58.718	4	165810			14127	1206	11897	12207	14127	14127	435	
MGGSSGALYGLFLTAAAQPLK	21	Unmodified	_MGGSSGALYGLFLTAAAQPLK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.04298	2052.0714	-0.0027487	-2.823E-06	1.8358	0.0018854	1.833	0.0018826	1027.54603959169	19.242	0.053192	19.242	19.215	19.268	0	132	31	1.23554629282893	0.0198422518386323	1.23554629282893	498.196657027843	0	8.00078766071766						124	7	3	NaN	NaN	NaN	0.0011741	1	32570	43.518	43.043	1	23476			14128	1932	11898	12208	14128	14128		
MGHAGAIIAGGK	12	Unmodified	_MGHAGAIIAGGK_			0	0	0	P53597	P53597	P53597	SUCLG1	Succinyl-CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.792401	1081.57025	1.5343	0.00083127	-0.33745	-0.00018283	1.1968	0.00064844	541.792216182311	3.3769	0.12424	3.3769	3.3503	3.4746	0	621	28	0.908462957275599	0.0182651557513902	0.908462957275599	368.510668059634	0	7.40911304555942						190	15	3	NaN	NaN	NaN	5.1915E-05	1	6247	79.059	64.523	1	48788			14129	1237	11899	12209	14129	14129		
MGIGMAEFLDK	11	Unmodified	_MGIGMAEFLDK_			0	0	0	P37268	P37268	P37268	FDFT1	Squalene synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.293585	1210.57262	0.26471	0.00016049	0.83784	0.00050798	1.1026	0.00066847	606.29412356449	14.586	0.11526	14.586	14.551	14.666	0	588	25	0.93076847747433	0.01621208273842	0.93076847747433	377.052253153743	0	6.56747888736345						184	14	3	NaN	NaN	NaN	0.0066456	1	9742	36.514	33.659	1	41932			14130	1000	11900	12210	14130	14130		
MGITEYNNQCR	11	Unmodified	_MGITEYNNQCR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.300461	1384.58637	1.4556	0.0010092	0.37349	0.00025894	1.8291	0.0012681	693.301411766073	5.3544	0.14186	5.3544	5.3189	5.4608	0	522	28	0.975277694896658	0.0181818689972096	0.975277694896658	394.522655222989	0	7.35499157955798						234	17	4	NaN	NaN	NaN	1.5606E-07	1	14955	114.64	104.39	1	69384			14131	1036	11901	12211	14131	14131		
MGIYYIPVLGPAPR	14	Unmodified	_MGIYYIPVLGPAPR_			0	0	0	Q9BSC4	Q9BSC4	Q9BSC4	NOL10	Nucleolar protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.926154	1545.83776	0.58326	0.0004514	-3.0898	-0.0023913	-2.5065	-0.0019399	773.923605831381	16.998	0.18624	16.998	16.91	17.096	0	417	76	1.04580932352505	0.050213057525148	1.04580932352505	422.617754699941	0	20.2913945692977						731	22	4	NaN	NaN	NaN	0.00022426	1	19925	58.916	56.614	1	169430			14132	2721	11902	12212	14132	14132		
MGLAISLVATEK	12	Unmodified	_MGLAISLVATEK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.849581	1231.68461	0.80547	0.00049686	-0.6597	-0.00040694	0.14577	8.992E-05	616.849104518852	13.611	0.10639	13.611	13.575	13.682	0	516	22	0.979317271586824	0.0141355861424926	0.979317271586824	396.642612494418	0	5.72518833208488						100	13	2	NaN	NaN	NaN	0.0048078	1	10375	56.202	40.62	1	20429			14133	2404	11903	12213	14133	14133		
MGLAMGGGGGASFDR	15	Unmodified	_MGLAMGGGGGASFDR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.310829	1382.6071	1.2335	0.00085397	2.0705	0.0014334	3.304	0.0022874	692.31178095735	9.5406	0.21278	9.5406	9.4785	9.6913	0	498	46	0.991429299781895	0.030261243599951	0.991429299781895	401.062027095817	0	12.2415543935474						858	25	5	NaN	NaN	NaN	0.002516	1	14897	52.863	44.39	1	263430			14134	1206	11904	12214	14134	14134		
MGLGHEQGFGAPCLK	15	Unmodified	_MGLGHEQGFGAPCLK_			0	0	0	Q9UGI8	Q9UGI8	Q9UGI8	TES	Testin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.590282	1600.74902	-1.0824	-0.00057864	-0.96952	-0.00051829	-2.0519	-0.0010969	534.590045689534	8.8576	0.14203	8.8576	8.7955	8.9375	0	777	49	0.802556497112065	0.0326999572037219	0.802556497112065	486.325970906479	0	19.8152260843011						596	17	5	NaN	NaN	NaN	0.00074411	1	21598	74.524	64.274	1	214020			14135	3203	11905	12215	14135	14135		
MGLSMER	7	Unmodified	_MGLSMER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	412.193674	822.372794	-1.0781	-0.0004444	0.097508	4.0192E-05	-0.98063	-0.00040421	412.193943832649	5.7623	0.21278	5.7623	5.7002	5.913	0	822	43	0.771863999559055	0.0286882520138049	0.771863999559055	314.338380310061	0	11.6831704511389						326	25	3	NaN	NaN	NaN	0.025025	1	1230	63.301	45.607	1	90525			14136	1206	11906	12216	14136	14136		
MGLVDQLVEPLGPGLKPPEER	21	Unmodified	_MGLVDQLVEPLGPGLKPPEER_			0	0	1	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.743594	2273.20895	0.88694	0.00067296	-1.1794	-0.0008949	-0.2925	-0.00022194	759.077175533883	16.049	0.29261	16.049	15.837	16.129	0	516	85	0.979317271586824	0.056561949877953	0.979317271586824	591.931094063407	0	34.1878754158663						1839	34	5	NaN	NaN	NaN	6.6497E-11	1	35401	85.513	79.898	1	475960			14137	1026	11907	12217	14137	14137		
MGLVMDR	7	Unmodified	_MGLVMDR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.204041	820.39353	-1.3956	-0.00057387	-0.47208	-0.00019412	-1.8677	-0.00076799	411.204304708938	6.8264	0.14183	6.8264	6.7732	6.9151	0	816	28	0.775960037304758	0.0184283211995636	0.775960037304758	316.0189742016	0	7.50515346379422						271	17	3	NaN	NaN	NaN	0.02927	1	1202	56.091	43.538	1	78581			14138	1206	11908	12218	14138	14138		
MGPAMGPALGAGIER	15	Unmodified	_MGPAMGPALGAGIER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.360321	1426.70609	2.1591	0.0015424	-0.098016	-7.0018E-05	2.0611	0.0014724	714.360498693071	10.587	0.29263	10.587	10.498	10.791	0	453	49	1.02166545906632	0.0322185054318638	1.02166545906632	413.166936738374	0	13.0293346784349						478	34	2	NaN	NaN	NaN	0.0042484	1	16281	37.504	26.717	1	601180			14139	1206	11909	12219	14139	14139		
MGPGATAGGAEK	12	Unmodified	_MGPGATAGGAEK_			0	0	0	P62820	P62820	P62820	RAB1A	Ras-related protein Rab-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.750398	1045.48624	1.2036	0.00063037	1.0054	0.00052658	2.209	0.0011569	523.751124925767	2.3395	0.29263	2.3395	2.2774	2.57	0	738	34	0.829104889055312	0.0224390480115776	0.829104889055312	336.465652995076	0	9.10616864219173						418	34	3	NaN	NaN	NaN	0.00033691	1	5363	81.335	66.8	1	77017			14140	1398	11910	12220	14140	14140		
MGPGIDR	7	Unmodified	_MGPGIDR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	373.186706	744.358859	0.058544	2.1848E-05	-0.59417	-0.00022174	-0.53563	-0.00019989	373.186644524572	3.4746	0.28386	3.4746	3.4213	3.7051	0	885	43	0.728786607772777	0.0287523102872271	0.728786607772777	297.30461878383	0	11.7293519912809						546	33	3	NaN	NaN	NaN	0.022887	1	574	56.091	43.538	1	156580			14141	1206	11911	12221	14141	14141		
MGPLGLDHMASSIER	15	Unmodified	_MGPLGLDHMASSIER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.597325	1612.77015	0.34669	0.00018673	-1.0822	-0.00058288	-0.73552	-0.00039615	538.597089773265	11.536	0.25725	11.536	11.42	11.678	0	684	73	0.86578508874114	0.0488526333871047	0.86578508874114	524.607159959203	0	29.6013890641165						1314	30	6	NaN	NaN	NaN	1.2574E-05	1	21969	138	105.45	1	831670			14142	1206	11912	12222	14142	14142		
MGPNIYELR	9	Unmodified	_MGPNIYELR_			0	0	0	Q9BPW8	Q9BPW8	Q9BPW8	NIPSNAP1	Protein NipSnap homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.778959	1091.54336	0.23067	0.00012613	-0.92086	-0.00050351	-0.69019	-0.00037738	546.778491000008	9.9928	0.1596	9.9928	9.9573	10.117	0	660	37	0.882057989648486	0.0243991920216602	0.882057989648486	357.758589649968	0	9.89619801499276						314	19	4	NaN	NaN	NaN	0.0011738	1	6493	81.642	74.952	1	91582			14143	2686	11913	12223	14143	14143		
MGPVMDR	7	Unmodified	_MGPVMDR_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	403.188391	804.362229	-0.72797	-0.00029351	-0.29163	-0.00011758	-1.0196	-0.00041109	403.188613691609	4.113	0.24829	4.113	4.0686	4.3169	0	846	34	0.755468431110051	0.0225549061059918	0.755468431110051	307.774250713761	0	9.18876162236302						449	29	4	NaN	NaN	NaN	0.041846	1	1021	38.322	18.835	1	172410			14144	1206	11914	12224	14144	14144		
MGTLVSLEPSSVASDVSK	18	Unmodified	_MGTLVSLEPSSVASDVSK_			0	0	0	Q9BT73	Q9BT73	Q9BT73	PSMG3	Proteasome assembly chaperone 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.961316	1805.90808	1.85	0.0016723	-2.7453	-0.0024817	-0.89537	-0.00080938	903.96095259114	13.274	0.23948	13.274	13.15	13.389	0	282	37	1.13599383354359	0.0239747667739112	1.13599383354359	458.474524904295	0	9.67595024004015						608	28	4	NaN	NaN	NaN	0.00010549	1	27379	65.173	55.911	1	183370			14145	2730	11915	12225	14145	14145		
MGVPYCIIK	9	Unmodified	_MGVPYCIIK_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.782656	1079.55076	0.46397	0.00025091	-2.2283	-0.001205	-1.7643	-0.0009541	540.782075924889	11.252	0.26607	11.252	11.146	11.412	0	708	85	0.849494101904619	0.0570026683172439	0.849494101904619	344.598543214253	0	23.1232170033983						1390	31	5	NaN	NaN	NaN	0.029233	1	6198	46.835	27.579	1	927840			14146	1391	11916	12226	14146	14146		
MGVVECAK	8	Unmodified	_MGVVECAK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.214606	892.414659	-0.051187	-2.2892E-05	2.2886	0.0010235	2.2374	0.0010006	447.215537427505	3.3769	0.20403	3.3769	3.3326	3.5366	0	768	37	0.808687310729125	0.0245181412255862	0.808687310729125	328.910455097622	0	9.97205332847921						299	24	3	NaN	NaN	NaN	0.068587	1	2205	42.835	24.432	1	70410			14147	3319	11917	12227	14147	14147		
MGYAEEAPYDAIHVGAAAPVVPQALIDQLK	30	Unmodified	_MGYAEEAPYDAIHVGAAAPVVPQALIDQLK_			0	0	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1046.53738	3136.59032	1.8757	0.001963	-0.61283	-0.00064135	1.2629	0.0013217	1047.20510415731	18.319	0.062073	18.319	18.284	18.346	0	294	70	1.12800004657306	0.0460117710123258	1.12800004657306	680.659123378256	0	27.7644773308989						377	8	5	NaN	NaN	NaN	4.9103E-07	1	38403	65.467	65.331	1	75390			14148	799	11918	12228	14148	14148		
MHAPPINMESVHMK	14	Unmodified	_MHAPPINMESVHMK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.259768	1620.75747	1.8318	0.0009915	-0.28123	-0.00015222	1.5506	0.00083929	541.260791830883	7.6865	0.29271	7.6865	7.6068	7.8995	8.8818E-16	648	37	0.890187667287968	0.0243856529681402	0.890187667287968	539.370858441514	0	14.7754356282582						579	34	4	NaN	NaN	NaN	0.0062258	1	22211	60.547	51.286	1	162320			14149	1107	11919	12229	14149	14149		
MHDLNTDQENLVGTHDAPIR	20	Unmodified	_MHDLNTDQENLVGTHDAPIR_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	569.773562	2275.06514	2.052	0.0011692	-0.53519	-0.00030493	1.5168	0.00086425	570.02424999113	7.6777	0.12422	7.6777	7.6334	7.7576	0	651	37	0.888155670855968	0.0243856529681402	0.888155670855968	715.767955243243	0	19.6524883362565						443	15	5	NaN	NaN	NaN	0.00045536	1	35416	57.279	53.207	1	188250			14150	220	11920	12230	14150	14150		
MHDLNTDQENLVGTHDAPIR	20	Unmodified	_MHDLNTDQENLVGTHDAPIR_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.362324	2275.06514	2.9011	0.002203	0.24709	0.00018763	3.1482	0.0023906	759.696689860054	7.6777	0.15083	7.6777	7.6422	7.7931	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	604.126227628131	0	12.1896420740926						484	18	6	NaN	NaN	NaN	1.719E-29	1	35417	182.09	165.32	1	241130			14151	220	11920	12230	14151	14151		
MHDLNTDQENLVGTHDAPIR	20	Oxidation (M)	_M(Oxidation (M))HDLNTDQENLVGTHDAPIR_	M(1)HDLNTDQENLVGTHDAPIR	M(84)HDLNTDQENLVGTHDAPIR	0	1	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.693962	2291.06006	1.7421	0.0013322	0.3792	0.00028997	2.1213	0.0016221	765.028354944738	6.9594	0.070937	6.9594	6.9239	6.9949	0	501	34	0.98941132619024	0.0222007820488888	0.98941132619024	598.003974363601	0	13.4182372364139						223	9	4	NaN	NaN	NaN	7.9074E-06	1	35571	84.105	81.03	1	65098			14152	220	11920	12231	14152	14152	42	
MHDYDGNNLLDGLELSTAITHVHK	24	Unmodified	_MHDYDGNNLLDGLELSTAITHVHK_			0	0	0	Q8NI22	Q8NI22	Q8NI22	MCFD2	Multiple coagulation factor deficiency protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	674.080155	2692.29151	1.0829	0.00072994	-1.19	-0.00080214	-0.1071	-7.2196E-05	674.330006417522	14.506	0.11527	14.506	14.462	14.577	0	579	46	0.936845902828289	0.0303871346419722	0.936845902828289	754.297979868069	0	24.466087971588						457	14	6	NaN	NaN	NaN	0.00043771	1	37583	40.324	40.272	1	146240			14153	2327	11921	12232	14153	14153		
MHEDINEEWISDK	13	Unmodified	_MHEDINEEWISDK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.36177	1644.70899	2.0104	0.0016553	0.74352	0.00061218	2.7539	0.0022674	823.362660530564	8.4761	0.13301	8.4761	8.4229	8.5559	0	390	34	1.06389100039157	0.0220876383289843	1.06389100039157	429.695157674605	0	8.92098084384537						394	16	4	NaN	NaN	NaN	0.00046322	1	22876	76.255	73.584	1	85413			14154	877	11922	12233	14154	14154		
MHLGLVIPK	9	Unmodified	_MHLGLVIPK_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.307155	1006.59976	0.35386	0.00017845	-2.082	-0.00105	-1.7281	-0.00087151	504.306098229437	10.108	0.11527	10.108	10.064	10.179	1.7764E-15	663	22	0.880024865079826	0.0142259494684417	0.880024865079826	357.309179592005	0	5.77604399055832						160	14	3	NaN	NaN	NaN	0.0015289	1	4445	58.687	35.111	1	54580			14155	1596	11923	12234	14155	14155		
MHNIPVYK	8	Unmodified	_MHNIPVYK_			0	0	0	Q13405	Q13405	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.265487	1000.51642	1.0036	0.00050308	3.0261	0.0015169	4.0297	0.00202	501.266759385218	4.2992	0.14188	4.2992	4.2283	4.3701	0	675	31	0.871889544407995	0.0203496003822382	0.871889544407995	354.035061961974	0	8.26305588641839						189	17	3	NaN	NaN	NaN	0.0050231	1	4297	60.709	45.127	1	33238			14156	1660	11924	12235	14156	14156		
MHPDLSPHLHTEECNVLINLLK	22	Unmodified	_MHPDLSPHLHTEECNVLINLLK_			0	0	0	Q9NRP2	Q9NRP2	Q9NRP2	CMC2	COX assembly mitochondrial protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	653.33463	2609.30941	0.85803	0.00056058	-0.79847	-0.00052167	0.059556	3.891E-05	653.585563145442	14.498	0.12415	14.498	14.427	14.551	-1.7764E-15	579	28	0.936845902828289	0.0182247029861181	0.936845902828289	754.42111067277	0	14.6759468413757						213	15	3	NaN	NaN	NaN	0.045147	1	37271	19.006	17.035	1	39089			14157	3024	11925	12236	14157	14157		
MHSLATAAPVPTTLAQVDR	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MHSLATAAPVPTTLAQVDR_			1	0	0	Q92600	Q92600	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.02786	2020.04116	1.5485	0.0015656	-2.03	-0.0020524	-0.48147	-0.00048678	1011.52831306349	14.267	0.097543	14.267	14.214	14.311	0	153	37	1.22165005014568	0.0238335707424004	1.22165005014568	492.645919388839	0	9.61119051180702						244	12	4	NaN	NaN	NaN	2.2049E-05	1	31991	58.338	52.95	1	47311			14158	2417	11926	12237	14158	14158		
MHSLLIK	7	Unmodified	_MHSLLIK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	421.251849	840.489145	-1.2417	-0.00052307	1.6604	0.00069946	0.41871	0.00017638	421.252577111979	5.2125	0.11531	5.2125	5.177	5.2923	0	771	34	0.806643990516186	0.0224796529754165	0.806643990516186	328.386284641028	0	9.15150897720406						198	14	2	NaN	NaN	NaN	0.0079642	1	1438	96.51	42.454	1	51590			14159	1241	11927	12238	14159	14159		
MHSPQTSAMLFTVDNEAGK	19	Unmodified	_MHSPQTSAMLFTVDNEAGK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.65568	2062.94521	1.0091	0.00069494	0.68109	0.00046903	1.6902	0.001164	688.990563382786	10.25	0.20396	10.25	10.117	10.321	0	519	100	0.97729762293174	0.0667500128383413	0.97729762293174	591.075678812882	0	40.3708227907425						1141	24	4	NaN	NaN	NaN	0.0010443	1	32747	49.487	46.592	1	252830			14160	1136	11928	12239	14160	14160		
MHSPQTSAMLFTVDNEAGK	19	Unmodified	_MHSPQTSAMLFTVDNEAGK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.47988	2062.94521	1.825	0.0018843	0.065386	6.751E-05	1.8904	0.0019518	1032.98152601505	10.241	0.097539	10.241	10.188	10.285	0	180	43	1.203763835057	0.027844013131697	1.203763835057	485.36415366431	0	11.2268581882128						310	12	3	NaN	NaN	NaN	0.018744	1	32748	32.6	29.705	1	58211			14161	1136	11928	12239	14161	14161		
MHSVGICGSDVHYWEYGR	18	Unmodified	_MHSVGICGSDVHYWEYGR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	538.988646	2151.92548	0.55142	0.00029721	-0.053896	-2.9049E-05	0.49752	0.00026816	539.239659546207	9.6913	0.097547	9.6913	9.6647	9.7622	0	672	31	0.873923798053065	0.0203383037367069	0.873923798053065	704.542612721903	0	16.3963971285755						225	12	4	NaN	NaN	NaN	0.0014822	1	34051	40.224	40.036	1	59549			14162	1508	11929	12240	14162	14162		
MHTTFEHDIQALGTQVR	17	Unmodified	_MHTTFEHDIQALGTQVR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.488898	1982.96324	1.8525	0.0018386	-1.5374	-0.0015258	0.31513	0.00031277	992.988182854878	10.197	0.062056	10.197	10.17	10.232	0	186	25	1.1997861197946	0.015915230866729	1.1997861197946	483.890753370552	0	6.41883826384503						124	8	3	NaN	NaN	NaN	0.00020704	1	31336	61.067	55.679	1	21135			14163	1511	11930	12241	14163	14163		
MHWSNVGGLSGMILTLK	17	Unmodified	_MHWSNVGGLSGMILTLK_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.323425	1842.94845	-0.064319	-3.9577E-05	0.28902	0.00017784	0.2247	0.00013826	615.324641967954	16.484	0.097551	16.484	16.44	16.537	0	585	28	0.932794566565362	0.0182322776363114	0.932794566565362	564.609511233886	0	11.0357818686939						182	12	4	NaN	NaN	NaN	0.017458	1	28306	38.14	36.003	1	37621			14164	2691	11931	12242	14164	14164		
MIAAVDTDSPR	11	Unmodified	_MIAAVDTDSPR_			0	0	0	Q07812	Q07812	Q07812	BAX	Apoptosis regulator BAX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.289888	1174.56522	1.619	0.00095242	6.4251	0.0037798	8.0441	0.0047322	588.795972145785	5.8421	0.17739	5.8421	5.8066	5.984	0	567	40	0.944945209309785	0.0263172834355764	0.944945209309785	382.927431758094	0	10.6647556467279						461	21	5	NaN	NaN	NaN	0.00064849	1	8719	78.816	51.08	1	160420			14165	1570	11932	12243	14165	14165		
MIAGQVLDINLAAEPK	16	Unmodified	_MIAGQVLDINLAAEPK_			0	0	0	P07910	P07910	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.960923	1681.90729	2.2591	0.0019021	1.0139	0.00085366	3.273	0.0027557	841.962213944363	15.012	0.55864	15.012	14.897	15.455	0	282	175	1.13599383354359	0.115751054421422	1.13599383354359	458.732009610688	0	46.7420792625787						5127	64	6	NaN	NaN	NaN	1.0176E-24	1	23970	224.75	205.94	1	2963200			14166	568	11933	12244	14166	14166		
MIAGQVLDINLAAEPK	16	Oxidation (M)	_M(Oxidation (M))IAGQVLDINLAAEPK_	M(1)IAGQVLDINLAAEPK	M(160)IAGQVLDINLAAEPK	0	1	0	P07910	P07910	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.95838	1697.90221	2.5064	0.0021303	-0.44663	-0.00037962	2.0598	0.0017507	849.958658936093	13.841	0.26599	13.841	13.726	13.992	0	282	157	1.13599383354359	0.103833824978985	1.13599383354359	458.696698505647	0	41.9264887754742						1659	31	5	NaN	NaN	NaN	7.3374E-17	1	24444	156.02	108.11	1	565120			14167	568	11933	12245	14167	14167	147	
MIAILTENYGGK	12	Unmodified	_MIAILTENYGGK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.344663	1308.67477	0.86544	0.00056716	0.71554	0.00046893	1.581	0.0010361	655.345728760067	11.811	0.22168	11.811	11.678	11.899	0	513	58	0.981336640919867	0.0383574228971185	0.981336640919867	397.201224043475	0	15.5253708978067						781	26	4	NaN	NaN	NaN	2.7783E-11	1	12622	123.5	108.74	1	409940			14168	857	11934	12246	14168	14168		
MIAPEGSLVFHEK	13	Unmodified	_MIAPEGSLVFHEK_			0	0	0	P48739	P48739	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.586755	1456.73844	-0.21388	-0.00010407	-0.53037	-0.00025807	-0.74426	-0.00036214	486.586594893632	9.576	0.14187	9.576	9.5317	9.6736	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	512.73275243118	0	12.3605760260965						341	17	4	NaN	NaN	NaN	0.020929	1	17152	47.361	42.834	1	159790			14169	1118	11935	12247	14169	14169		
MIAPEGSLVFHEK	13	Unmodified	_MIAPEGSLVFHEK_			0	0	0	P48739	P48739	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.376494	1456.73844	1.6467	0.001201	0.57547	0.00041973	2.2221	0.0016208	729.376962047963	9.5672	0.088653	9.5672	9.5406	9.6292	0	363	43	1.08195024817156	0.0280863584131199	1.08195024817156	437.459800388372	0	11.3560237781761						261	11	4	NaN	NaN	NaN	0.00035226	1	17153	50.09	36.095	1	68250			14170	1118	11935	12247	14170	14170		
MICQQVEAIK	10	Unmodified	_MICQQVEAIK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.312309	1218.61006	1.4909	0.00090991	0.56249	0.0003433	2.0534	0.0012532	610.312733327864	6.9239	0.10639	6.9239	6.8885	6.9949	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	395.05346728326	0	9.00152945302915						196	13	4	NaN	NaN	NaN	0.00095772	1	9979	69.716	52.32	1	62378			14171	1151	11936	12248	14171	14171		
MICSTQLDR	9	Unmodified	_MICSTQLDR_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.265358	1122.51616	1.7532	0.00098574	0.88806	0.00049932	2.6412	0.0014851	562.266304978936	5.1061	0.25716	5.1061	5.0529	5.31	0	630	37	0.902373728295776	0.024365365507813	0.902373728295776	365.872636486871	0	9.87907807793334						481	30	4	NaN	NaN	NaN	0.00044367	1	7331	94.806	75.319	1	123780			14172	491	11937	12249	14172	14172		
MIDLIIPR	8	Unmodified	_MIDLIIPR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.791338	969.568123	-0.43641	-0.000212	-3.2444	-0.0015761	-3.6808	-0.0017881	485.789954577148	13.948	0.21281	13.948	13.886	14.099	0	720	49	0.841341816837976	0.0326091497098583	0.841341816837976	341.778908876905	0	13.2468390185642						443	25	3	NaN	NaN	NaN	0.00031857	1	3631	104.76	94.685	1	137830			14173	1259	11938	12250	14173	14173		
MIDMGSACR	9	Unmodified	_MIDMGSACR_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.719729	1039.42491	0.10805	5.6263E-05	2.6943	0.001403	2.8023	0.0014592	520.721264007422	5.3987	0.14185	5.3987	5.3455	5.4873	0	708	28	0.849494101904619	0.018336272903194	0.849494101904619	344.766083458863	0	7.44175266184118						189	17	3	NaN	NaN	NaN	0.061186	1	5206	24.121	17.359	1	34956			14174	2664	11939	12251	14174	14174		
MIDMPVER	8	Unmodified	_MIDMPVER_			0	0	0	Q15287	Q15287	Q15287	RNPS1	RNA-binding protein with serine-rich domain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.740988	989.467423	0.56901	0.00028208	0.33714	0.00016714	0.90615	0.00044922	495.741477285006	7.8729	0.13298	7.8729	7.8197	7.9527	0	675	70	0.871889544407995	0.0468203550089841	0.871889544407995	354.0886941226	0	19.0145167697181						554	16	4	NaN	NaN	NaN	0.002226	1	4034	97.033	82.368	1	188230			14175	1829	11940	12252	14175	14175		
MIEAVQNHIGSLNWGYR	17	Unmodified	_MIEAVQNHIGSLNWGYR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.331748	1986.97341	0.086182	5.7167E-05	-1.4902	-0.00098852	-1.404	-0.00093135	663.664950222927	12.467	0.16846	12.467	12.414	12.582	0	666	49	0.877991458330206	0.0325412920913477	0.877991458330206	531.15028686809	0	19.6862013467073						821	20	6	NaN	NaN	NaN	5.4113E-11	1	31386	128.46	114.1	1	457190			14176	1914	11941	12253	14176	14176		
MIEAVQNHIGSLNWGYR	17	Unmodified	_MIEAVQNHIGSLNWGYR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.493984	1986.97341	1.8799	0.0018696	-0.4627	-0.00046016	1.4172	0.0014094	994.994934579167	12.458	0.15073	12.458	12.414	12.564	-1.7764E-15	177	49	1.2057522832638	0.0318217315415521	1.2057522832638	486.29016577382	0	12.833975370682						537	18	5	NaN	NaN	NaN	1.8546E-11	1	31388	87.727	83.877	1	170390			14177	1914	11941	12253	14177	14177		
MIELLADNINLGDPSSMLK	19	Unmodified	_MIELLADNINLGDPSSMLK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.53158	2073.04861	0.84338	0.00087503	0.010925	1.1335E-05	0.8543	0.00088636	1037.53267666131	19.038	0.08867	19.038	18.993	19.082	0	186	28	1.1997861197946	0.0179034061988514	1.1997861197946	483.744554067517	0	7.21851595469002						205	11	4	NaN	NaN	NaN	1.7512E-10	1	32913	81.578	75.962	1	44109			14178	2900	11942	12254	14178	14178		
MIESLTK	7	Unmodified	_MIESLTK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.225497	820.43644	-0.54816	-0.00022542	-0.17634	-7.2516E-05	-0.7245	-0.00029793	411.225576155737	5.0351	0.15959	5.0351	4.9997	5.1593	0	765	40	0.810730346695089	0.0265631681667801	0.810730346695089	330.179311803772	0	10.8181575050056						227	19	3	NaN	NaN	NaN	0.028254	1	1208	44.767	9.1336	1	58108			14179	3325	11943	12255	14179	14179		
MIETAQVDER	10	Unmodified	_MIETAQVDER_			0	0	0	Q9UL25	Q9UL25	Q9UL25	RAB21	Ras-related protein Rab-21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.287345	1190.56014	2.0005	0.0011929	0.012694	7.569E-06	2.0132	0.0012005	596.288828760313	4.8401	0.19508	4.8401	4.7603	4.9553	0	582	64	0.934820374997243	0.0425419995198165	0.934820374997243	378.765412187178	0	17.2369349389048						780	23	5	NaN	NaN	NaN	0.0044392	1	9170	63.397	44.141	1	278830			14180	3273	11944	12256	14180	14180		
MIFDVESMK	9	Unmodified	_MIFDVESMK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.261753	1098.50895	0.09506	5.2308E-05	-0.19635	-0.00010804	-0.10129	-5.5735E-05	550.262091706906	12.547	0.19508	12.547	12.476	12.671	0	648	46	0.890187667287968	0.030475726379646	0.890187667287968	361.027405218585	0	12.3598346970089						676	23	4	NaN	NaN	NaN	0.029234	1	6659	34.781	17.385	1	396780			14181	611	11945	12257	14181	14181		
MIFDVESMK	9	Oxidation (M)	_MIFDVESM(Oxidation (M))K_	MIFDVESM(1)K	M(-56)IFDVESM(56)K	0	1	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.25921	1114.50387	0.037003	2.0657E-05	0.5228	0.00029186	0.5598	0.00031251	558.259716244936	9.6558	0.15073	9.6558	9.5938	9.7445	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	350.242845780936	0	9.07989233292994						193	18	3	NaN	NaN	NaN	0.026326	1	7100	56.378	36.891	2	47161			14182	611	11945	12258	14182	14182	169	
MIFVGIK	7	Unmodified	_MIFVGIK_			0	0	0	P99999	P99999	P99999	CYCS	Cytochrome c	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	404.243492	806.472432	-1.949	-0.00078787	-1.7176	-0.00069433	-3.6666	-0.0014822	404.242820538866	11.039	0.14189	11.039	10.995	11.137	0	834	28	0.763668499782291	0.0184462999547469	0.763668499782291	311.101295529988	0	7.51460589940865						202	17	3	NaN	NaN	NaN	0.066925	1	1052	32.971	19.419	1	49358			14183	1494	11946	12259	14183	14183		
MIGGLFIYNHK	11	Unmodified	_MIGGLFIYNHK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	431.565514	1291.67471	-2.2938	-0.00098991	0.12954	5.5905E-05	-2.1642	-0.000934	431.565326962414	11.261	0.088682	11.261	11.234	11.323	0	786	28	0.796423123669906	0.0184052442534667	0.796423123669906	483.597234384566	0	11.1758749270545						209	11	3	NaN	NaN	NaN	0.026729	1	12134	31.952	28.85	1	61357			14184	2499	11947	12260	14184	14184		
MIGGPILPSER	11	Unmodified	_MIGGPILPSER_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.320991	1168.62743	0.72126	0.00042217	0.78931	0.000462	1.5106	0.00088417	585.321519290264	9.9396	0.17732	9.9396	9.842	10.019	0	615	52	0.912521036363781	0.0344865119804736	0.912521036363781	369.80976744501	0	13.9760602410971						430	21	3	NaN	NaN	NaN	0.0068456	1	8573	61.48	53.833	1	119930			14185	1132	11948	12261	14185	14185		
MIHILLYYK	9	Unmodified	_MIHILLYYK_			0	0	0	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.563222	1192.66784	-3.2859	-0.0013096	1.543	0.00061497	-1.7429	-0.00069466	398.564003965436	12.236	0.070952	12.236	12.201	12.272	0	786	19	0.796423123669906	0.0122693083129709	0.796423123669906	484.021075948875	0	7.45659390629896						91	9	3	NaN	NaN	NaN	0.072431	1	9243	14.535	5.1422	1	18127			14186	365	11949	12262	14186	14186		
MIHILLYYK	9	Unmodified	_MIHILLYYK_			0	0	0	O75832	O75832	O75832	PSMD10	26S proteasome non-ATPase regulatory subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.341195	1192.66784	0.090419	5.4011E-05	2.1451	0.0012813	2.2355	0.0013354	597.342454327579	12.236	0.097571	12.236	12.183	12.281	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	386.959379152383	0	7.37688235871059						91	12	2	NaN	NaN	NaN	0.012186	1	9244	38.322	19.919	1	14227			14187	365	11949	12262	14187	14187		
MIIENFEALK	10	Unmodified	_MIIENFEALK_			0	0	0	Q5T8P6	Q5T8P6	Q5T8P6	RBM26	RNA-binding protein 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.323199	1206.63185	0.60239	0.00036404	0.50461	0.00030495	1.107	0.00066899	604.323758305492	13.629	0.088663	13.629	13.575	13.664	0	507	31	0.985374541851584	0.0201895069753196	0.985374541851584	399.187744607393	0	8.17902575305925						176	11	3	NaN	NaN	NaN	0.00058548	1	9646	90.761	72.358	1	42004			14188	1995	11950	12263	14188	14188		
MILALSK	7	Oxidation (M)	_M(Oxidation (M))ILALSK_	M(1)ILALSK	M(72)ILALSK	0	1	0		REV__Q9ULT8	REV__Q9ULT8			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	396.238407	790.462261	-2.9685	-0.0011762	-4.6489	-0.0018421	-7.6174	-0.0030183	396.23654294956	12.103	0.11528	12.103	12.05	12.165	0	834	22	0.763668499782291	0.0143471216299236	0.763668499782291	311.206533498242	0	5.84667036731128						122	14	2	NaN	NaN	NaN	0.066162	1	916	72.355	15.464	1	27047	+		14189	3517	11951	12264	14189	14189	657	
MILELFSK	8	Unmodified	_MILELFSK_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.777896	979.54124	-0.57728	-0.00028332	-1.3726	-0.00067365	-1.9499	-0.00095697	490.777542703712	15.304	0.38139	15.304	15.189	15.571	0	723	49	0.839303037468863	0.0326182134266176	0.839303037468863	340.902139439801	0	13.248633980132						979	44	4	NaN	NaN	NaN	0.0028771	1	3840	82.716	33.658	1	815490			14190	1464	11952	12265	14190	14190		
MILELGEDGFK	11	Unmodified	_MILELGEDGFK_			0	0	0	Q9BQP7	Q9BQP7	Q9BQP7	MGME1	Mitochondrial genome maintenance exonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.318114	1250.62167	0.41641	0.0002608	1.2419	0.00077785	1.6583	0.0010387	626.318563343526	14.099	0.070925	14.099	14.063	14.134	0	555	34	0.953040030838688	0.0222530586923161	0.953040030838688	385.935022138929	0	9.0114102463462						91	9	2	NaN	NaN	NaN	0.010978	1	10933	30.918	19.558	1	20574			14191	2700	11953	12266	14191	14191		
MILIQDGSQNTNVDK	15	Unmodified	_MILIQDGSQNTNVDK_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.419619	1674.82468	2.7416	0.0022986	-4.319	-0.0036212	-1.5774	-0.0013225	838.417305827038	8.6446	0.17745	8.6446	8.5736	8.7511	0	375	82	1.07392668217569	0.0541553837455577	1.07392668217569	433.683332330228	0	21.869544426268						1207	21	5	NaN	NaN	NaN	1.8042E-12	1	23763	130.71	114.83	1	485270			14192	2446	11954	12267	14192	14192		
MILIYLLPVK	10	Unmodified	_MILIYLLPVK_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.882696	1201.75084	-0.5524	-0.00033248	0.25333	0.00015248	-0.29906	-0.00018	601.882775867839	19.046	0.070941	19.046	19.011	19.082	0	585	25	0.932794566565362	0.0162075912580637	0.932794566565362	377.904283959252	0	6.5662026652185						139	9	3	NaN	NaN	NaN	5.9272E-05	1	9525	70.67	59.314	1	34529			14193	1971	11955	12268	14193	14193		
MIMDTAGNDPYCFVEFHEHR	20	Unmodified	_MIMDTAGNDPYCFVEFHEHR_			0	0	0	P31483	P31483	P31483	TIA1	Nucleolysin TIA-1 isoform p40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	618.015969	2468.03477	-0.35651	-0.00022033	-0.069323	-4.2843E-05	-0.42583	-0.00026317	618.266965613985	12.493	0.079804	12.493	12.467	12.547	0	687	22	0.863749705078866	0.0142496650202144	0.863749705078866	695.769127181626	0	11.478414331661						185	10	5	NaN	NaN	NaN	0.0037571	1	36668	36.96	35.112	1	38827			14194	924	11956	12269	14194	14194		
MINLSVPDTIDER	13	Unmodified	_MINLSVPDTIDER_			0	0	0	P13797;P13796	P13797	P13797	PLS3;LCP1	Plastin-3;Plastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.879598	1501.74464	1.348	0.0010135	0.96409	0.00072488	2.3121	0.0017384	751.880731872578	13.167	0.25716	13.167	13.052	13.309	0	435	55	1.03374239103424	0.0362208047125181	1.03374239103424	417.85027842777	0	14.6408558508097						804	30	3	NaN	NaN	NaN	2.744E-05	1	18573	92.445	70.401	1	420450			14195	683	11957	12270	14195	14195		
MINTDLSR	8	Unmodified	_MINTDLSR_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.242209	948.469866	0.31933	0.00015176	1.2096	0.00057486	1.529	0.00072662	475.243476483809	5.4164	0.43456	5.4164	5.2657	5.7002	0	711	121	0.847456455381371	0.0816477499928521	0.847456455381371	344.369903440637	0	33.1781386555497						1267	50	5	NaN	NaN	NaN	0.00021964	1	3216	125.5	87.896	1	1016900			14196	988	11958	12271	14196	14196		
MIPCDFLIPVQTQHPIR	17	Unmodified	_MIPCDFLIPVQTQHPIR_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.028901	2064.06487	0.63576	0.00043806	-0.17457	-0.00012029	0.46118	0.00031777	689.363449918901	14.781	0.52322	14.781	14.639	15.163	0	516	94	0.979317271586824	0.0626005211728765	0.979317271586824	592.295032256466	0	37.8610474696128						3173	60	6	NaN	NaN	NaN	1.0949E-06	1	32778	117.21	112.12	1	1867600			14197	546	11959	12272	14197	14197		
MIPCDFLIPVQTQHPIR	17	Unmodified	_MIPCDFLIPVQTQHPIR_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.03971	2064.06487	0.79404	0.00082027	-0.17494	-0.00018072	0.61909	0.00063955	1033.54037495344	14.843	0.22168	14.843	14.684	14.905	0	150	64	1.22363604450103	0.0417059030387732	1.22363604450103	493.374948520193	0	16.815986957244						707	26	4	NaN	NaN	NaN	0.027638	1	32779	35.45	33.348	1	162810			14198	546	11959	12272	14198	14198		
MIPCDFLIPVQTQHPIR	17	Oxidation (M)	_M(Oxidation (M))IPCDFLIPVQTQHPIR_	M(1)IPCDFLIPVQTQHPIR	M(53)IPCDFLIPVQTQHPIR	0	1	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.360539	2080.05979	1.0436	0.00072465	-1.6631	-0.0011548	-0.61949	-0.00043015	694.694617799251	13.726	0.48769	13.726	13.549	14.036	0	516	46	0.979317271586824	0.0302905481075687	0.979317271586824	592.264632336106	0	18.3189052809407						1060	56	6	NaN	NaN	NaN	0.0024614	1	33032	52.863	50.474	1	250420			14199	546	11959	12273	14199	14199	119	
MISAAQLLDELMGR	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MISAAQLLDELMGR_			1	0	0	O95232	O95232	O95232	LUC7L3	Luc7-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.404926	1588.7953	0.48387	0.00038487	0.41684	0.00033156	0.90071	0.00071643	795.405547709125	20.377	0.0088684	20.377	20.368	20.377	0	306	28	1.12000185836644	0.0180021182425405	1.12000185836644	452.490740783092	0	7.27301634223426						54	2	4	NaN	NaN	NaN	5.7812E-07	1	21242	88.24	79.767	1	8611.4			14200	413	11960	12274	14200	14200		
MISDAIPELK	10	Unmodified	_MISDAIPELK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.8021	1115.58965	0.68638	0.00038355	-1.3591	-0.00075946	-0.67271	-0.00037591	558.801741855729	11.465	0.38142	11.465	11.243	11.624	0	648	79	0.890187667287968	0.052791659028424	0.890187667287968	360.958921641647	0	21.406295565325						1845	44	5	NaN	NaN	NaN	5.4173E-05	1	7151	119.07	85.255	1	798580			14201	1023	11961	12275	14201	14201		
MISGMYMGELVR	12	Unmodified	_MISGMYMGELVR_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.832551	1385.65055	1.4494	0.0010056	1.9264	0.0013366	3.3758	0.0023422	693.834243079302	13.496	0.11529	13.496	13.46	13.575	0	450	46	1.02367897599655	0.0302111061455164	1.02367897599655	414.098955564446	0	12.2210065798471						329	14	3	NaN	NaN	NaN	0.043849	1	14998	16.288	12.942	1	73827			14202	1223	11962	12276	14202	14202		
MISLCLQK	8	Unmodified	_MISLCLQK_			0	0	0	O95747	O95747	O95747	OXSR1	Serine/threonine-protein kinase OSR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.767006	991.519458	-0.39215	-0.00019481	-1.8287	-0.00090846	-2.2209	-0.0011033	496.766538204557	9.9396	0.15073	9.9396	9.8686	10.019	0	714	28	0.845418525735192	0.018341368585978	0.845418525735192	343.328645218439	0	7.44852050953074						298	18	3	NaN	NaN	NaN	0.0094452	1	4092	63.301	42.954	1	76348			14203	449	11963	12277	14203	14203		
MITAAYVPLPTYHNLFPDSMTATQLLVPSR	30	Unmodified	_MITAAYVPLPTYHNLFPDSMTATQLLVPSR_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1116.57707	3346.70939	1.3979	0.0015608	-1.1788	-0.0013162	0.21909	0.00024463	1117.24479761971	19.605	0.053204	19.605	19.57	19.623	0	306	43	1.12000185836644	0.0279859609320023	1.12000185836644	675.645367752147	0	16.8826370461371						118	7	2	NaN	NaN	NaN	0.040161	1	38576	16.417	13.207	1	30777			14204	1753	11964	12278	14204	14204		
MITEGGVSINHQQVTNPESVLIVGQHILK	29	Unmodified	_MITEGGVSINHQQVTNPESVLIVGQHILK_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	786.173581	3140.66522	1.4064	0.0011057	-2.6789	-0.0021061	-1.2725	-0.0010004	786.421308888403	15.003	0.16849	15.003	14.95	15.118	1.7764E-15	411	34	1.04982941439551	0.0221089774592802	1.04982941439551	844.646382287622	0	17.7879068456206						487	20	5	NaN	NaN	NaN	0.047243	1	38406	19.5	19.012	1	112430			14205	3360	11965	12279	14205	14205		
MITEHTSNDPYCFVEFYEHR	20	Unmodified	_MITEHTSNDPYCFVEFYEHR_			0	0	0	Q01085	Q01085	Q01085	TIAL1	Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	644.530875	2574.09439	1.1047	0.000712	-0.58902	-0.00037964	0.51565	0.00033235	644.781266646486	12.813	0.079795	12.813	12.777	12.857	0	612	19	0.914549654013882	0.0121708628142703	0.914549654013882	736.519780207289	0	9.80163424211776						204	10	5	NaN	NaN	NaN	0.035665	1	37129	26.21	23.759	1	48890			14206	1512	11966	12280	14206	14206		
MITEHTSNDPYCFVEFYEHR	20	Unmodified	_MITEHTSNDPYCFVEFYEHR_			0	0	0	Q01085	Q01085	Q01085	TIAL1	Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.038741	2574.09439	1.9595	0.0016833	-0.17309	-0.00014869	1.7865	0.0015346	859.373093698421	12.813	0.053199	12.813	12.786	12.839	0	447	19	1.02569221487577	0.012078599755792	1.02569221487577	619.521466035685	0	7.29551391717712						99	7	4	NaN	NaN	NaN	0.011101	1	37130	36.96	36.085	1	14196			14207	1512	11966	12280	14207	14207		
MITGSMVPLLQVISR	15	Unmodified	_MITGSMVPLLQVISR_			0	0	0	Q15386	Q15386	Q15386	UBE3C	Ubiquitin-protein ligase E3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.962411	1643.91027	0.91948	0.0007567	-1.6394	-0.0013492	-0.71996	-0.0005925	822.961043333718	19.1	0.11527	19.1	19.038	19.153	0	351	22	1.08996939197032	0.0140286686675297	1.08996939197032	440.229760145376	0	5.66606501812095						162	14	3	NaN	NaN	NaN	0.041309	1	22866	36.952	36.07	1	34280			14208	1838	11967	12281	14208	14208		
MITSAAGIISLLDEDEPQLK	20	Unmodified	_MITSAAGIISLLDEDEPQLK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.56139	2143.10824	1.063	0.0011402	-0.35534	-0.00038112	0.70771	0.00075906	1073.0624239938	19.641	0.07097	19.641	19.605	19.676	0	117	76	1.24546401832526	0.0496158630468113	1.24546401832526	502.05229197071	0	20.0003833063375						561	9	5	NaN	NaN	NaN	9.1124E-16	1	33924	133.13	107.42	1	143270			14209	2641	11968	12282	14209	14209		
MITSAAGIISLLDEDEPQLK	20	Oxidation (M)	_M(Oxidation (M))ITSAAGIISLLDEDEPQLK_	M(1)ITSAAGIISLLDEDEPQLK	M(120)ITSAAGIISLLDEDEPQLK	0	1	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.55885	2159.10315	0.55642	0.00060124	-1.0098	-0.0010912	-0.45343	-0.00048995	1081.05997321649	18.949	0.062107	18.949	18.922	18.984	0	126	43	1.23951419873743	0.0277639280700372	1.23951419873743	499.630058402554	0	11.1912336439927						256	8	4	NaN	NaN	NaN	2.9942E-15	1	34161	124.24	118.62	1	48133			14210	2641	11968	12283	14210	14210	611	
MIVDPVEPHGEMK	13	Unmodified	_MIVDPVEPHGEMK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.57575	1480.70542	0.84384	0.00041734	-0.97217	-0.00048081	-0.12833	-6.347E-05	494.575502884247	7.2787	0.16846	7.2787	7.2255	7.394	0	666	43	0.877991458330206	0.0284736285227984	0.877991458330206	532.406730519474	0	17.2661719245881						615	20	5	NaN	NaN	NaN	0.0036862	1	17920	44.57	27.1	1	254770			14211	1648	11969	12284	14211	14211		
MIVDPVEPHGEMK	13	Unmodified	_MIVDPVEPHGEMK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.359987	1480.70542	2.1503	0.0015942	-0.34038	-0.00025234	1.81	0.0013418	741.360348773215	7.2698	0.17732	7.2698	7.2255	7.4028	0	414	55	1.04781950764076	0.0361908186814239	1.04781950764076	423.595363448591	0	14.6306333114345						451	21	4	NaN	NaN	NaN	0.0004853	1	17921	64.064	58.569	1	122670			14212	1648	11969	12284	14212	14212		
MIVTDIYNHR	10	Unmodified	_MIVTDIYNHR_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.216774	1260.62849	-1.3979	-0.0005888	-2.4111	-0.0010156	-3.8089	-0.0016044	421.216302090196	8.1833	0.070913	8.1833	8.1479	8.2188	0	816	22	0.775960037304758	0.0143331381547551	0.775960037304758	471.294394801539	0	8.70550975242946						146	9	4	NaN	NaN	NaN	0.010092	1	11228	56.014	48.864	1	30900			14213	3409	11970	12285	14213	14213		
MIWWANK	7	Unmodified	_MIWWANK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.741648	947.468743	-1.4019	-0.00066555	-1.1419	-0.00054213	-2.5439	-0.0012077	474.740885432069	11.332	0.10645	11.332	11.279	11.385	0	810	25	0.78005493425781	0.0163750277383129	0.78005493425781	316.985615124925	0	6.65420858500886						168	13	3	NaN	NaN	NaN	0.022545	1	3193	49.406	37.757	1	38830			14214	2420	11971	12286	14214	14214		
MKPDETPMFDPSLLK	15	Unmodified	_MKPDETPMFDPSLLK_			0	0	1	Q96EK6	Q96EK6	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.62477	1747.85248	-2.4227	-0.0014139	0.29858	0.00017426	-2.1241	-0.0012397	583.625145577681	13.034	0.13299	13.034	12.981	13.114	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	479.784309227201	0	9.90873337358147						318	16	5	NaN	NaN	NaN	0.0039491	1	25832	47.915	35.897	1	94712			14215	2513	11972	12287	14215	14215		
MLAAYLYEVSQLK	13	Unmodified	_MLAAYLYEVSQLK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.907627	1527.8007	0.68162	0.00052137	1.2378	0.00094682	1.9194	0.0014682	764.908576762962	16.759	0.097545	16.759	16.714	16.812	0	321	31	1.10999792833052	0.0200175059687449	1.10999792833052	448.603737892195	0	8.09004032499803						249	12	3	NaN	NaN	NaN	0.00028414	1	19359	81.335	68.062	1	63749			14216	2577	11973	12288	14216	14216		
MLADDAEAGAEDEK	14	Unmodified	_MLADDAEAGAEDEK_			0	0	0	Q9UPT8	Q9UPT8	Q9UPT8	ZC3H4	Zinc finger CCCH domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.811578	1463.6086	1.2373	0.0009067	2.2101	0.0016196	3.4474	0.0025263	732.813495161302	5.2923	0.079839	5.2923	5.2657	5.3455	0	489	37	0.997481546940468	0.0242039733351906	0.997481546940468	403.289155001339	0	9.7858451456712						186	10	3	NaN	NaN	NaN	0.0025921	1	17371	62.705	51.349	1	52436			14217	3315	11974	12289	14217	14217		
MLAEDELR	8	Unmodified	_MLAEDELR_			0	0	0	P61204;P84077	P61204	P61204	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.742042	975.469531	0.94597	0.00046234	0.075618	3.6958E-05	1.0216	0.0004993	488.742292138213	6.6757	0.2394	6.6757	6.6313	6.8707	0	675	52	0.871889544407995	0.034596730190302	0.871889544407995	354.158353684788	0	14.0530656499541						764	28	5	NaN	NaN	NaN	3.0041E-05	1	3739	126.2	60.117	1	679570			14218	1334	11975	12290	14218	14218		
MLAEDELRDAVLLVFANK	18	Unmodified	_MLAEDELRDAVLLVFANK_			0	0	1	P61204;P84077	P61204	P61204	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.034597	2046.08196	0.30117	0.00020571	-1.1164	-0.00076251	-0.81518	-0.0005568	683.368049340723	20.022	0.044346	20.022	20.022	20.066	0	543	34	0.961130371139249	0.0222438199941358	0.961130371139249	581.329629744818	0	13.4539413482211						184	6	6	NaN	NaN	NaN	4.1454E-10	1	32467	119.52	102.11	1	120430			14219	1334	11976	12291	14219	14219		
MLAEDELRDAVLLVFANK	18	Oxidation (M)	_M(Oxidation (M))LAEDELRDAVLLVFANK_	M(1)LAEDELRDAVLLVFANK	M(58)LAEDELRDAVLLVFANK	0	1	1	P61204;P84077	P61204	P61204	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.366235	2062.07688	0.47862	0.00032947	-1.1829	-0.00081425	-0.70425	-0.00048478	688.699757065083	19.765	0.08869	19.765	19.738	19.827	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	575.182465797982	0	12.2378373327577						256	11	5	NaN	NaN	NaN	0.0015412	1	32742	58.313	57.615	1	83353			14220	1334	11976	12292	14220	14220	479	
MLAIYDGFDGFAK	13	Unmodified	_MLAIYDGFDGFAK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.349945	1446.68534	1.3023	0.00094333	-0.00018853	-1.3656E-07	1.3021	0.00094319	724.349943424607	16.076	0.17736	16.076	16.005	16.182	0	465	103	1.01360860968299	0.0684454899814483	1.01360860968299	409.854344587099	0	27.6760488893862						1097	21	4	NaN	NaN	NaN	0.00015605	1	16880	83.438	71.371	1	456360			14221	1521	11977	12293	14221	14221		
MLAIYDGFDGFAK	13	Oxidation (M)	_M(Oxidation (M))LAIYDGFDGFAK_	M(1)LAIYDGFDGFAK	M(55)LAIYDGFDGFAK	0	1	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.347403	1462.68025	0.58247	0.00042657	0.29048	0.00021273	0.87295	0.0006393	732.347736710277	14.914	0.088668	14.914	14.87	14.959	0	477	73	1.0055473068722	0.0483411285821531	1.0055473068722	406.552625019029	0	19.5447917637898						346	11	3	NaN	NaN	NaN	0.001471	1	17342	54.584	43.228	1	90928			14222	1521	11977	12294	14222	14222	539	
MLAMPIDLDTLSPEER	16	Unmodified	_MLAMPIDLDTLSPEER_			0	0	0	Q7Z7F7	Q7Z7F7	Q7Z7F7	MRPL55	39S ribosomal protein L55, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.952437	1829.89032	1.4704	0.0013468	0.17119	0.0001568	1.6416	0.0015036	915.952957586699	17.468	0.13302	17.468	17.406	17.539	0	279	61	1.13799159301878	0.0399689530119671	1.13799159301878	459.234914441757	0	16.1294150408318						589	16	3	NaN	NaN	NaN	2.7813E-06	1	27964	75.5	71.995	1	152490			14223	2152	11978	12295	14223	14223		
MLAPEGALNIHEK	13	Unmodified	_MLAPEGALNIHEK_			0	0	0	Q00169	Q00169	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.918505	1421.73368	-0.11052	-5.2489E-05	-0.026956	-1.2802E-05	-0.13748	-6.529E-05	474.918616329204	8.21	0.13306	8.21	8.1656	8.2987	0	717	34	0.84338031290707	0.0224234600075238	0.84338031290707	511.614904880213	0	13.6026134156379						315	16	4	NaN	NaN	NaN	0.031167	1	16155	44.598	37.04	1	121380			14224	1496	11979	12296	14224	14224		
MLAPEGALNIHEK	13	Unmodified	_MLAPEGALNIHEK_			0	0	0	Q00169	Q00169	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.874119	1421.73368	2.3093	0.0016439	-0.44753	-0.00031858	1.8618	0.0013253	711.874225862549	8.2188	0.11535	8.2188	8.1833	8.2987	0	369	34	1.07793901817685	0.022069372225481	1.07793901817685	435.93890269554	0	8.92527104866076						248	14	4	NaN	NaN	NaN	0.00021938	1	16156	65.879	52.081	1	63104			14225	1496	11979	12296	14225	14225		
MLATLEPEQR	10	Unmodified	_MLATLEPEQR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.308081	1186.60161	1.3037	0.00077482	1.4467	0.00085981	2.7505	0.0016346	594.309116906344	7.4294	0.16847	7.4294	7.3408	7.5092	8.8818E-16	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	372.209996741872	0	9.03922679071593						238	20	2	NaN	NaN	NaN	0.00033109	1	9058	110.22	83.762	1	147730			14226	1259	11980	12297	14226	14226		
MLDAEDIVGTARPDEK	16	Unmodified	_MLDAEDIVGTARPDEK_			0	0	1	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.289215	1758.84581	1.4952	0.00087812	0.78279	0.00045972	2.278	0.0013378	587.289767798707	10.454	0.1685	10.454	10.383	10.551	0	588	40	0.93076847747433	0.0263464629071559	0.93076847747433	563.584111940982	0	15.9528908205049						488	20	5	NaN	NaN	NaN	5.8393E-05	1	26108	82.437	74.861	1	212060			14227	671	11981	12298	14227	14227		
MLDAEDIVNTARPDEK	16	Unmodified	_MLDAEDIVNTARPDEK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.940915	1815.86728	2.1323	0.0019381	-0.8437	-0.00076687	1.2886	0.0011713	908.940263719198	10.933	0.15075	10.933	10.871	11.021	0	183	40	1.20177511391933	0.0258569287367985	1.20177511391933	485.002841226902	0	10.4351336264986						421	18	4	NaN	NaN	NaN	2.529E-07	1	27623	99.668	93.97	1	94793			14228	221	11982	12299	14228	14228		
MLDAEDIVNTARPDEK	16	Unmodified	_MLDAEDIVNTARPDEK_			0	0	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.296369	1815.86728	1.4359	0.00087058	3.1877	0.0019327	4.6236	0.0028033	606.300331204229	10.924	0.26603	10.924	10.844	11.11	0	606	112	0.918606045818476	0.0749446526956989	0.918606045818476	556.083227928863	0	45.3681581748127						1316	31	6	NaN	NaN	NaN	0.00018879	1	27627	102.57	88.204	1	749770			14229	221	11982	12299	14229	14229		
MLDAEDIVNTARPDEK	16	Oxidation (M)	_M(Oxidation (M))LDAEDIVNTARPDEK_	M(1)LDAEDIVNTARPDEK	M(75)LDAEDIVNTARPDEK	0	1	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.628007	1831.86219	0.85616	0.00052365	0.81732	0.00049989	1.6735	0.0010235	611.628091098421	9.6115	0.133	9.6115	9.5494	9.6824	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	557.273917434612	0	11.0469897606081						319	16	4	NaN	NaN	NaN	0.0036871	1	28017	75.012	67.047	1	84770			14230	221	11982	12300	14230	14230	43	
MLDAEDIVNTARPDEK	16	Oxidation (M)	_M(Oxidation (M))LDAEDIVNTARPDEK_	M(1)LDAEDIVNTARPDEK	M(68)LDAEDIVNTARPDEK	0	1	1	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.938373	1831.86219	2.1561	0.001977	0.11789	0.0001081	2.274	0.0020851	916.937181936889	9.6204	0.12415	9.6204	9.5583	9.6824	0	198	40	1.1918274123006	0.025878237088949	1.1918274123006	480.956389562976	0	10.4430417945584						372	15	3	NaN	NaN	NaN	0.009384	1	28018	68.108	60.143	1	78696			14231	221	11982	12300	14231	14231	43	
MLDFFTIFSK	10	Unmodified	_MLDFFTIFSK_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.820292	1247.62603	0.22307	0.00013938	-1.726	-0.0010785	-1.503	-0.00093908	624.819335176901	19.969	0.044375	19.969	19.96	20.004	0	573	34	0.940896116921038	0.0222746380512064	0.940896116921038	381.027327589778	0	9.02038562711277						138	6	4	NaN	NaN	NaN	0.0019529	1	10851	69.915	47.529	1	57657			14232	580	11983	12301	14232	14232		
MLDGLDPHPMLPNYK	15	Unmodified	_MLDGLDPHPMLPNYK_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.953109	1739.8375	-0.51023	-0.00029642	1.5636	0.00090839	1.0534	0.00061198	581.287992812656	12.405	0.079776	12.405	12.352	12.431	0	657	28	0.884090832094921	0.018290507163651	0.884090832094921	535.366290366029	0	11.0759218551266						104	10	2	NaN	NaN	NaN	0.035156	1	25588	39.293	30.031	1	30206			14233	1534	11984	12302	14233	14233		
MLDHEYTTK	9	Unmodified	_MLDHEYTTK_			0	0	0	P11387;Q969P6	P11387	P11387	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	379.846346	1136.51721	-0.24018	-9.123E-05	0.71185	0.00027039	0.47167	0.00017916	379.846579140224	3.04	0.19505	3.04	3.0134	3.2084	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	459.390007428967	0	9.97547953927318						247	23	3	NaN	NaN	NaN	0.052037	1	7700	34.781	34.218	1	57074			14234	651	11985	12303	14234	14234		
MLDILAEYLK	10	Unmodified	_MLDILAEYLK_			0	0	0	O14646	O14646	O14646	CHD1	Chromodomain-helicase-DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.8334	1207.65225	-0.025432	-1.5382E-05	-0.15442	-9.34E-05	-0.17985	-0.00010878	604.833443206658	18.381	0.079785	18.381	18.355	18.435	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	386.084937560959	0	8.19594044005714						140	10	3	NaN	NaN	NaN	0.0018911	1	9680	58.916	41.52	1	29191			14235	110	11986	12304	14235	14235		
MLDLLEDFLEHEGYK	15	Unmodified	_MLDLLEDFLEHEGYK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.96596	1850.87605	-0.34632	-0.00021401	0.68773	0.00042499	0.34141	0.00021098	618.301058762941	19.747	0.044322	19.747	19.729	19.774	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	536.342857229806	0	11.0722098268189						109	6	4	NaN	NaN	NaN	6.1307E-05	1	28516	80.623	70.881	1	23151			14236	1776	11987	12305	14236	14236		
MLDMGFEPQIR	11	Unmodified	_MLDMGFEPQIR_			0	0	0	O00571;O15523;P17844;Q92841	O00571;P17844;Q92841	Q92841	DDX3X;DDX3Y;DDX5;DDX17	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.82304	1335.63153	1.5315	0.0010243	-0.538	-0.00035983	0.99354	0.0006645	668.823061945624	13.478	0.26601	13.478	13.425	13.691	0	540	115	0.963152256458504	0.0767627068547028	0.963152256458504	389.758795312113	0	31.0635623266848						2013	31	6	NaN	NaN	NaN	5.66E-06	1	13455	132.39	94.668	1	1343700			14237	2435;743;93	11988	12306	14237	14237		
MLDMGFEPQIR	11	Oxidation (M)	_M(Oxidation (M))LDMGFEPQIR_	M(0.998)LDM(0.002)GFEPQIR	M(26)LDM(-26)GFEPQIR	0	1	0	O00571;O15523;P17844;Q92841	O00571;P17844;Q92841	Q92841	DDX3X;DDX3Y;DDX5;DDX17	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.820498	1351.62644	0.62458	0.00042273	1.477	0.00099969	2.1016	0.0014224	677.322773145886	12.05	0.2483	12.05	11.944	12.192	0	537	67	0.965173861991602	0.0444353690970316	0.965173861991602	390.52953293083	0	17.9794797833262						566	29	3	NaN	NaN	NaN	0.0011132	1	13926	67.881	49.544	2	150310			14238	2435;743;93	11988	12307	14238	14238	32	
MLDNFDCFGDK	11	Unmodified	_MLDNFDCFGDK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.278663	1360.54277	0.60198	0.00041011	2.3942	0.0016311	2.9962	0.0020413	681.280319711486	11.598	0.13309	11.598	11.553	11.687	0	519	34	0.97729762293174	0.0222192115744939	0.97729762293174	395.408823016688	0	8.98976124660351						259	16	4	NaN	NaN	NaN	5.1694E-05	1	14211	72.922	61.562	1	48870			14239	1794	11989	12308	14239	14239		
MLEDPQER	8	Unmodified	_MLEDPQER_			0	0	0	Q9BUQ8	Q9BUQ8	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.237124	1016.45969	1.3519	0.00068845	2.0274	0.0010324	3.3794	0.0017209	509.237895683882	3.7406	0.16845	3.7406	3.6785	3.847	0	696	49	0.857641857947968	0.0325774564338044	0.857641857947968	348.175620659971	0	13.2254227195743						240	20	3	NaN	NaN	NaN	0.026462	1	4656	26.456	17.693	1	52683			14240	2749	11990	12309	14240	14240		
MLEDRDLFVMR	11	Unmodified	_MLEDRDLFVMR_			0	0	1	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.57234	1423.69519	-1.9406	-0.0009229	-2.0163	-0.0009589	-3.9569	-0.0018818	475.57192038755	11.74	0.11528	11.74	11.704	11.82	0	813	31	0.778007628350577	0.0204744871478547	0.778007628350577	471.952005649173	0	12.4201549213012						244	14	4	NaN	NaN	NaN	0.0028256	1	16195	88.181	65.128	1	86485			14241	1728	11991	12310	14241	14241		
MLEENTNILK	10	Unmodified	_MLEENTNILK_			0	0	0	Q9NYL9	Q9NYL9	Q9NYL9	TMOD3	Tropomodulin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.815738	1203.61692	1.045	0.00062995	0.88052	0.00053079	1.9255	0.0011607	602.816907768314	8.4938	0.2128	8.4938	8.414	8.6268	0	570	43	0.942920803299286	0.0283397285014204	0.942920803299286	382.00001329435	0	11.481109151926						372	25	3	NaN	NaN	NaN	0.002344	1	9573	57.032	43.385	1	129920			14242	3119	11992	12311	14242	14242		
MLEIDPQK	8	Unmodified	_MLEIDPQK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.254785	972.495018	0.29187	0.00014222	1.3831	0.00067392	1.675	0.00081613	487.255641946673	7.0569	0.25724	7.0569	6.9683	7.2255	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	353.346949157396	0	7.43913969298023						431	30	4	NaN	NaN	NaN	0.036908	1	3683	51.43	20.868	1	140930			14243	832	11993	12312	14243	14243		
MLELVAQK	8	Unmodified	_MLELVAQK_			0	0	0	Q04323	Q04323	Q04323	UBXN1	UBX domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.267696	930.520839	-0.62411	-0.000291	-1.6857	-0.000786	-2.3098	-0.001077	466.267189468693	8.0858	0.15087	8.0858	8.0414	8.1922	0	738	37	0.829104889055312	0.0244840671338465	0.829104889055312	337.00544228607	0	9.95201449457784						176	18	3	NaN	NaN	NaN	0.017666	1	2891	51.43	39.781	1	51420			14244	1542	11994	12313	14244	14244		
MLEQLDMR	8	Unmodified	_MLEQLDMR_			0	0	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.25172	1034.48889	0.84269	0.00043673	3.1387	0.0016266	3.9814	0.0020634	518.251563824019	8.9553	0.35485	8.9553	8.8576	9.2125	0	684	55	0.86578508874114	0.0366343767135493	0.86578508874114	351.399672278931	0	14.8689416561817						1175	41	5	NaN	NaN	NaN	5.8262E-05	1	5104	133.68	68.368	1	1110400			14245	1705;51	11995	12314	14245	14245		
MLEQLDMR	8	Oxidation (M)	_M(Oxidation (M))LEQLDMR_	M(1)LEQLDMR	M(77)LEQLDM(-77)R	0	1	0	O00148;Q13838	O00148;Q13838	Q13838	DDX39A;DDX39B	ATP-dependent RNA helicase DDX39A;Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.249177	1050.4838	0.50254	0.00026446	1.8286	0.00096231	2.3312	0.0012268	526.250351880471	6.8707	0.12412	6.8707	6.8264	6.9505	0	687	40	0.863749705078866	0.0264636674362559	0.863749705078866	350.503461294489	0	10.7387672382557						308	15	3	NaN	NaN	NaN	0.034732	1	5472	77.072	49.335	2	77781			14246	1705;51	11995	12315	14246	14246	25	
MLESITNELSLFSK	14	Unmodified	_MLESITNELSLFSK_			0	0	0	Q96F86	Q96F86	Q96F86	EDC3	Enhancer of mRNA-decapping protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.418556	1610.82256	0.9357	0.00075457	1.2465	0.0010052	2.1822	0.0017597	806.419564325389	18.053	0.088676	18.053	18.027	18.115	0	375	31	1.07392668217569	0.0200644481678189	1.07392668217569	433.824681527028	0	8.10525800400558						190	11	3	NaN	NaN	NaN	1.5264E-05	1	21923	71.219	56.856	1	43006			14247	2524	11996	12316	14247	14247		
MLEVFHAIK	9	Unmodified	_MLEVFHAIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.30207	1086.58959	0.99055	0.00053916	1.4592	0.00079424	2.4497	0.0013334	544.302604258472	10.019	0.12413	10.019	9.9928	10.117	0	585	37	0.932794566565362	0.0243147574808095	0.932794566565362	378.35859653584	0	9.86251190272526						228	15	3	NaN	NaN	NaN	0.0077424	1	6388	67.903	49.5	1	50362			14248	1240	11997	12317	14248	14248		
MLFDLLVNCK	10	Unmodified	_MLFDLLVNCK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.825052	1251.63555	-0.094013	-5.893E-05	-1.6706	-0.0010472	-1.7646	-0.0011061	626.824231051675	17.273	0.10639	17.273	17.229	17.335	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	392.482141207809	0	9.82034450029073						226	13	4	NaN	NaN	NaN	1.5416E-05	1	10963	105.81	88.413	1	61207			14249	2900	11998	12318	14249	14249		
MLFDYLADK	9	Unmodified	_MLFDYLADK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.275718	1114.53688	0.64642	0.00036088	-1.5976	-0.00089192	-0.95122	-0.00053104	558.275023316154	14.498	0.2394	14.498	14.453	14.693	0	627	43	0.90440375274676	0.0284223196233265	0.90440375274676	366.727578408522	0	11.5249946902135						615	28	4	NaN	NaN	NaN	0.0022344	1	7107	72.038	47.187	1	386630			14250	1304	11999	12319	14250	14250		
MLFESLHHGLDDIQTLIK	18	Unmodified	_MLFESLHHGLDDIQTLIK_			0	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.03823	2109.09286	-0.40188	-0.00028294	-1.4347	-0.0010101	-1.8365	-0.001293	704.371425670764	16.998	0.1064	16.998	16.963	17.069	0	564	31	0.946969335010767	0.0202398580816178	0.946969335010767	572.649239334968	0	12.2394030156787						272	13	4	NaN	NaN	NaN	7.638E-07	1	33462	100.69	95.876	1	71882			14251	2128	12000	12320	14251	14251		
MLFYSFFK	8	Unmodified	_MLFYSFFK_			0	0	0	Q9Y333	Q9Y333	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.772614	1081.53067	-0.82725	-0.00044818	1.3724	0.00074351	0.54512	0.00029533	541.773066647875	17.3	0.2217	17.3	17.238	17.459	0	666	43	0.877991458330206	0.0284696767536509	0.877991458330206	356.150306618793	0	11.5484997136923						393	26	2	NaN	NaN	NaN	0.050075	1	6239	21.275	16.368	1	221260			14252	3368	12001	12321	14252	14252		
MLGETCADCGTILLQDK	17	Unmodified	_MLGETCADCGTILLQDK_			0	0	0	O60232	O60232	O60232	SSSCA1	Sjoegren syndrome/scleroderma autoantigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.944286	1923.87402	1.198	0.0011536	0.57796	0.00055654	1.776	0.0017102	963.447086730948	12.015	0.12414	12.015	11.97	12.094	0	180	34	1.203763835057	0.0218759356051808	1.203763835057	485.598650858852	0	8.82475823478103						425	15	5	NaN	NaN	NaN	5.1211E-10	1	30140	115.35	106.97	1	122370			14253	249	12002	12322	14253	14253		
MLGPEGGEGFVVK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MLGPEGGEGFVVK_			1	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.34212	1360.66969	1.26	0.00085852	0.25864	0.00017622	1.5187	0.0010347	681.342352932387	15.775	0.13302	15.775	15.712	15.845	0	471	82	1.00957851518677	0.0544175996021309	1.00957851518677	408.469106193494	0	22.0170179300672						909	16	4	NaN	NaN	NaN	0.00016295	1	14227	79.311	71.309	1	310430			14254	1217	12003	12323	14254	14254		
MLGTEGGEGFVVK	13	Unmodified	_MLGTEGGEGFVVK_			0	0	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.334295	1322.65404	1.3136	0.00087003	1.081	0.000716	2.3946	0.001586	662.836196421888	9.9307	0.17734	9.9307	9.8332	10.01	0	513	73	0.981336640919867	0.0484481440475263	0.981336640919867	397.15736310706	0	19.6074785501847						598	21	3	NaN	NaN	NaN	0.012607	1	13069	44.598	20.476	1	209010			14255	931	12004	12324	14255	14255		
MLGTEGGEGFVVK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MLGTEGGEGFVVK_			1	0	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.339578	1364.6646	1.294	0.00088421	1.8831	0.0012868	3.1771	0.002171	683.340848668493	15.42	0.13312	15.42	15.384	15.517	0	444	73	1.02770517576159	0.0483010891795206	1.02770517576159	415.790790473652	0	19.5417406901823						509	16	3	NaN	NaN	NaN	2.8369E-06	1	14327	83.438	69.443	1	96679			14256	931	12004	12325	14256	14256		
MLHDYIGDK	9	Unmodified	_MLHDYIGDK_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.263142	1090.51173	1.5704	0.00085786	0.15469	8.4501E-05	1.7251	0.00094236	546.263200421285	4.9908	0.13299	4.9908	4.9553	5.0883	0	627	37	0.90440375274676	0.0243619867259138	0.90440375274676	366.826247274842	0	9.88122411001183						265	16	4	NaN	NaN	NaN	0.023315	1	6466	50.834	27.259	1	96384			14257	1277	12005	12326	14257	14257		
MLHFLTAVVGSTCDVK	16	Unmodified	_MLHFLTAVVGSTCDVK_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.452407	1776.89026	1.6342	0.0014536	0.0546	4.8564E-05	1.6888	0.0015021	889.452799710783	13.788	0.088639	13.788	13.753	13.841	0	138	52	1.23157729878518	0.0337526558485721	1.23157729878518	497.112795321321	0	13.6238928039294						291	11	3	NaN	NaN	NaN	0.0034478	1	26601	65.408	60.02	1	67385			14258	2391	12006	12327	14258	14258		
MLHVDPHQR	9	Unmodified	_MLHVDPHQR_			0	0	0	P51812;Q15349;Q15418	P51812;Q15418	Q15418	RPS6KA3;RPS6KA2;RPS6KA1	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.194192	1131.56075	-0.43159	-0.00016323	-0.06069	-2.2953E-05	-0.49228	-0.00018618	378.194630008794	2.8715	0.15962	2.8715	2.8272	2.9868	0	879	22	0.732894652678068	0.0143751500407492	0.732894652678068	445.686561604316	0	8.74179006600275						163	19	2	NaN	NaN	NaN	0.0073226	1	7574	56.014	40.516	1	44151			14259	1845;1200	12007	12328	14259	14259		
MLIPYIEHWPR	11	Unmodified	_MLIPYIEHWPR_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.591952	1453.75403	-1.9622	-0.00095283	-0.91137	-0.00044255	-2.8736	-0.0013954	485.591215365942	14.542	0.11527	14.542	14.498	14.613	0	786	22	0.796423123669906	0.0143131971978526	0.796423123669906	483.02714590785	0	8.68089158365581						199	14	3	NaN	NaN	NaN	0.031815	1	17079	36.24	32.895	1	39495			14260	313	12008	12329	14260	14260		
MLIPYIEHWPR	11	Unmodified	_MLIPYIEHWPR_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.591952	1453.75403	-0.50216	-0.00024384	-2.1504	-0.0010442	-2.6525	-0.001288	485.59103886381	14.56	0.18622	14.56	14.471	14.657	0	726	34	0.837263974740672	0.0224234600075238	0.837263974740672	507.796949633745	0	13.5997307128635						446	22	3	NaN	NaN	NaN	0.0034488	1	17080	54.436	46.879	1	107320			14261	313	12008	12329	14261	14261		
MLISILTER	9	Unmodified	_MLISILTER_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.312635	1074.61072	0.67198	0.00036174	-1.1671	-0.00062827	-0.49514	-0.00026654	538.312102401757	14.533	0.20396	14.533	14.48	14.684	1.7764E-15	624	37	0.906433495720521	0.0243586086467772	0.906433495720521	367.717385009793	0	9.88167793484939						447	24	3	NaN	NaN	NaN	1.9276E-05	1	6086	129.56	91.242	1	201800			14262	669	12009	12330	14262	14262		
MLITILGTVK	10	Unmodified	_MLITILGTVK_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.841028	1087.6675	0.37316	0.00020331	-2.0534	-0.0011188	-1.6803	-0.00091547	544.839883992711	15.393	0.25726	15.393	15.331	15.588	1.7764E-15	630	112	0.902373728295776	0.0751422852560739	0.902373728295776	366.014820563457	0	30.4787131897918						1086	30	4	NaN	NaN	NaN	0.00064025	1	6425	83.623	73.535	1	548210			14263	745	12010	12331	14263	14263		
MLITILGTVK	10	Oxidation (M)	_M(Oxidation (M))LITILGTVK_	M(1)LITILGTVK	M(43)LITILGTVK	0	1	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.838485	1103.66242	0.90571	0.00050071	-1.8932	-0.0010466	-0.98747	-0.00054591	552.837508858161	13.549	0.11524	13.549	13.496	13.611	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.886282526172	0	8.22628272370252						241	14	3	NaN	NaN	NaN	0.054636	1	6829	43.272	23.038	1	72648			14264	745	12010	12332	14264	14264	245	
MLIYDPAK	8	Unmodified	_MLIYDPAK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.754421	949.494289	-0.18863	-8.9742E-05	-0.43932	-0.00020901	-0.62795	-0.00029875	475.754108446338	8.769	0.18641	8.769	8.68	8.8665	0	711	46	0.847456455381371	0.030568952954407	0.847456455381371	344.364604294649	0	12.421718332547						410	22	3	NaN	NaN	NaN	0.032689	1	3241	36.57	21.071	1	127870			14265	540	12011	12333	14265	14265		
MLLCEAVAAVMAK	13	Unmodified	_MLLCEAVAAVMAK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.863851	1405.71315	0.77243	0.00054369	0.23886	0.00016812	1.0113	0.00071181	703.864463946923	17.841	0.11526	17.841	17.779	17.894	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	412.411667792843	0	8.14562516232917						232	14	4	NaN	NaN	NaN	0.0052074	1	15645	39.039	25.044	1	49877			14266	1250	12012	12334	14266	14266		
MLLCEAVAAVMAK	13	Unmodified	_MLLCEAVAAVMAK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.863851	1405.71315	1.1994	0.0008442	1.0353	0.00072871	2.2347	0.0015729	703.864623234193	17.832	0.079803	17.832	17.796	17.876	0	366	25	1.07994477139643	0.0160449211219345	1.07994477139643	436.798013035136	0	6.48958155175302						136	10	3	NaN	NaN	NaN	0.00014693	1	15646	83.358	56.779	1	28783			14267	1250	12012	12334	14267	14267		
MLLDILK	7	Unmodified	_MLLDILK_			0	0	0	Q9UBN4;Q9UL62	Q9UBN4	Q9UBN4	TRPC4;TRPC5	Short transient receptor potential channel 4;Short transient receptor potential channel 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.261882	844.509211	-2.2427	-0.00094925	-2.9312	-0.0012407	-5.1739	-0.0021899	423.26043046454	15.251	0.13298	15.251	15.216	15.349	0	771	31	0.806643990516186	0.020440313348464	0.806643990516186	328.361215733946	0	8.3206547374009						203	16	3	NaN	NaN	NaN	0.016696	1	1492	58.687	0	1	62461			14268	3180	12013	12335	14268	14268		
MLLDPMGGIVMTNDGNAILR	20	Unmodified	_MLLDPMGGIVMTNDGNAILR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.03905	2130.06355	0.32815	0.00034982	-9.2924	-0.0099061	-8.9642	-0.0095562	1066.53132816348	18.807	0.133	18.807	18.772	18.905	0	135	76	1.23356193185193	0.0495818657609735	1.23356193185193	497.274143558014	0	19.9874681567719						560	16	5	NaN	NaN	NaN	0.0010375	1	33739	39.166	34.349	1	112810			14269	1129	12014	12336	14269	14269		
MLLDPMGGIVMTNDGNAILR	20	Unmodified	_MLLDPMGGIVMTNDGNAILR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.02846	2130.06355	0.70218	0.00049927	-0.32243	-0.00022926	0.37975	0.00027001	711.362665323442	18.532	0.062081	18.532	18.497	18.559	0	462	58	1.01562323939346	0.0382885589296732	1.01562323939346	614.125956333581	0	23.1522841909004						239	8	3	NaN	NaN	NaN	0.014232	1	33741	50.641	50.022	1	46837			14270	1129	12014	12336	14270	14270		
MLLDPMGGIVMTNDGNAILR	20	Unmodified	_MLLDPMGGIVMTNDGNAILR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.03905	2130.06355	0.60635	0.0006464	-0.25587	-0.00027277	0.35048	0.00037363	1066.54103752384	18.523	0.14187	18.523	18.488	18.63	0	105	97	1.25339330680955	0.0634083132054339	1.25339330680955	505.268548395874	0	25.5611915234271						1120	17	6	NaN	NaN	NaN	7.4848E-29	1	33742	157.52	149.16	1	399100			14271	1129	12014	12336	14271	14271		
MLLDPMGGIVMTNDGNAILR	20	Oxidation (M)	_MLLDPM(Oxidation (M))GGIVMTNDGNAILR_	M(0.001)LLDPM(0.999)GGIVMTNDGNAILR	M(-31)LLDPM(31)GGIVM(-40)TNDGNAILR	0	1	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.03651	2146.05847	0.81675	0.00087722	-0.32069	-0.00034443	0.49607	0.00053279	1074.53840468949	16.218	0.19504	16.218	16.165	16.36	0	120	46	1.2434810169581	0.0297531834770868	1.2434810169581	501.248497600731	0	11.993539357128						638	23	4	NaN	NaN	NaN	1.1463E-06	1	33967	67.838	53.445	3	115750			14272	1129	12014	12337	14272	14272	404;405	
MLLDPMGGIVMTNDGNAILR	20	Oxidation (M)	_MLLDPMGGIVM(Oxidation (M))TNDGNAILR_	MLLDPM(0.001)GGIVM(0.999)TNDGNAILR	M(-46)LLDPM(-31)GGIVM(31)TNDGNAILR	0	1	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.03651	2146.05847	0.67068	0.00072034	3.8355	0.0041194	4.5061	0.0048398	1074.54354008067	17.388	0.097528	17.388	17.353	17.45	0	111	58	1.24942920585258	0.0376822062974438	1.24942920585258	503.646205287744	0	15.1897363369436						451	12	5	NaN	NaN	NaN	0.00536	1	33968	51.829	49.588	3	126850			14273	1129	12014	12337	14273	14273	404;405	
MLLDQYR	7	Unmodified	_MLLDQYR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.741845	937.469137	-0.4284	-0.00020124	-0.92516	-0.00043458	-1.3536	-0.00063582	469.741299892932	8.4938	0.12416	8.4938	8.4406	8.5648	0	723	40	0.839303037468863	0.0265041371730591	0.839303037468863	341.113875890264	0	10.7719483364373						336	15	3	NaN	NaN	NaN	0.0084348	1	3022	72.355	25.519	1	108510			14274	1901	12015	12338	14274	14274		
MLLDSEQHPCQLK	13	Unmodified	_MLLDSEQHPCQLK_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.593692	1597.75925	1.0414	0.00055569	0.99371	0.00053024	2.0351	0.0010859	534.262637660751	6.8707	0.17733	6.8707	6.8175	6.9949	0	645	46	0.892219381832517	0.0304884139621503	0.892219381832517	540.667738175407	0	18.4753908658819						376	21	4	NaN	NaN	NaN	0.04226	1	21502	32.549	26.172	1	125800			14275	2490	12016	12339	14275	14275		
MLLDSVLTTHER	12	Unmodified	_MLLDSVLTTHER_			0	0	0	Q96GC5	Q96GC5	Q96GC5	MRPL48	39S ribosomal protein L48, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.250143	1413.7286	-1.9663	-0.00092857	-0.19198	-9.0664E-05	-2.1582	-0.0010192	472.249978096014	11.82	0.088697	11.82	11.775	11.864	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	489.356420014462	0	9.91745069446688						206	11	3	NaN	NaN	NaN	0.0065588	1	15882	46.033	35.331	1	76912			14276	2538	12017	12340	14276	14276		
MLLELSEEHK	10	Unmodified	_MLLELSEEHK_			0	0	0	Q86X83	Q86X83	Q86X83	COMMD2	COMM domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.815738	1227.61692	1.3828	0.00085016	1.2072	0.00074219	2.59	0.0015924	614.816865814759	8.0502	0.071021	8.0502	8.0237	8.0947	0	537	25	0.965173861991602	0.0161717265136965	0.965173861991602	390.928602992197	0	6.55010532602495						148	9	3	NaN	NaN	NaN	0.0068966	1	10231	58.916	43.334	1	28890			14277	2185	12018	12341	14277	14277		
MLLGHMPTVELLK	13	Unmodified	_MLLGHMPTVELLK_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.612136	1480.81458	0.067477	3.3375E-05	-1.1402	-0.00056397	-1.0727	-0.00053059	494.611496855973	14.524	0.18622	14.524	14.435	14.622	0	672	28	0.873923798053065	0.0183057433537801	0.873923798053065	529.939774724064	0	11.1004432316303						430	22	4	NaN	NaN	NaN	0.042091	1	17942	27.378	24.499	1	114990			14278	1971	12019	12342	14278	14278		
MLLGHMPTVELLK	13	Unmodified	_MLLGHMPTVELLK_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.414565	1480.81458	1.3893	0.00103	-0.17788	-0.00013189	1.2114	0.00089814	741.414290353586	14.533	0.10639	14.533	14.489	14.595	0	378	37	1.07192009927972	0.0240773390598485	1.07192009927972	433.338060751861	0	9.73358688140161						199	13	2	NaN	NaN	NaN	0.064214	1	17943	40.386	38.884	1	47028			14279	1971	12019	12342	14279	14279		
MLLHSEQHPGQLK	13	Unmodified	_MLLHSEQHPGQLK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.398293	1516.78203	2.9071	0.0022076	-2.3912	-0.0018159	0.51584	0.00039173	759.396460103671	4.0864	0.079829	4.0864	4.0598	4.1396	0	390	28	1.06389100039157	0.0180741958638628	1.06389100039157	429.997762916221	0	7.30513162073015						131	10	3	NaN	NaN	NaN	2.8895E-07	1	19035	120.65	110.91	1	25594			14280	938	12020	12343	14280	14280		
MLLHSEQHPGQLK	13	Unmodified	_MLLHSEQHPGQLK_			0	0	0	P32322	P32322	P32322	PYCR1	Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.601287	1516.78203	0.40596	0.00020566	0.33429	0.00016935	0.74025	0.00037501	506.601729297315	4.0864	0.16848	4.0864	4.0509	4.2194	0	753	40	0.81889964927511	0.026548391943247	0.81889964927511	496.464715562314	0	16.0951831722095						462	20	5	NaN	NaN	NaN	0.00019721	1	19036	106.35	92.358	1	168340			14281	938	12020	12343	14281	14281		
MLLLEILHEIK	11	Unmodified	_MLLLEILHEIK_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.272108	1350.79449	-2.3653	-0.0010674	1.584	0.00071481	-0.78135	-0.0003526	451.2729618563	18.869	0.10639	18.869	18.843	18.949	0	768	25	0.808687310729125	0.0163477001153799	0.808687310729125	490.817056712424	0	9.92191907575972						171	13	4	NaN	NaN	NaN	0.059258	1	13914	10.787	8.4858	1	48286			14282	2549	12021	12344	14282	14282		
MLLLEILHEIK	11	Unmodified	_MLLLEILHEIK_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.404524	1350.79449	0.38047	0.00025735	0.14091	9.5312E-05	0.52138	0.00035267	676.404687871309	18.869	0.070917	18.869	18.851	18.922	0	435	25	1.03374239103424	0.0160959081053016	1.03374239103424	418.276407370207	0	6.51278178590576						139	9	3	NaN	NaN	NaN	5.1229E-05	1	13915	114.39	105.42	1	34501			14283	2549	12021	12344	14283	14283		
MLLPSGSLFFLR	12	Unmodified	_MLLPSGSLFFLR_			0	0	0	Q9Y6N7;Q9HCK4	Q9Y6N7	Q9Y6N7	ROBO1;ROBO2	Roundabout homolog 1;Roundabout homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.889041	1379.76353	-0.44113	-0.00030477	-0.53998	-0.00037306	-0.98111	-0.00067784	690.888958202632	19.233	0.062063	19.233	19.206	19.268	0	525	34	0.973257487423603	0.0222192115744939	0.973257487423603	393.719043451037	0	8.98850185114321						128	8	3	NaN	NaN	NaN	0.0047351	1	14825	43.272	38.744	1	25064			14284	3474	12022	12345	14284	14284		
MLLSWDGGESR	11	Unmodified	_MLLSWDGGESR_			0	0	0	Q658Y4	Q658Y4	Q658Y4	FAM91A1	Protein FAM91A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.795337	1249.57612	0.42541	0.00026622	-0.20324	-0.00012718	0.22217	0.00013903	625.795422467569	11.704	0.12414	11.704	11.651	11.775	0	570	34	0.942920803299286	0.0222684693182358	0.942920803299286	381.840720179289	0	9.01773333668478						201	15	3	NaN	NaN	NaN	0.0054021	1	10902	41.796	30.968	1	46013			14285	2018	12023	12346	14285	14285		
MLLVDELR	8	Unmodified	_MLLVDELR_			0	0	0	P18085	P18085	P18085	ARF4	ADP-ribosylation factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.778428	987.542302	0.23254	0.00011505	-1.233	-0.00061008	-1.0005	-0.00049502	494.777969302293	13.079	0.20395	13.079	13.026	13.23	0	639	49	0.896281965493857	0.0325051879347241	0.896281965493857	364.004594409378	0	13.2012449272705						652	24	4	NaN	NaN	NaN	1.5831E-07	1	4011	140.12	93.315	1	401290			14286	751	12024	12347	14286	14286		
MLLYTEVTR	9	Oxidation (M)	_M(Oxidation (M))LLYTEVTR_	M(1)LLYTEVTR	M(70)LLYTEVTR	0	1	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.299724	1140.5849	1.2094	0.00069094	-3.4579	-0.0019755	-2.2485	-0.0012845	571.296932031766	8.3697	0.2484	8.3697	8.2188	8.4672	0	594	40	0.926715457081489	0.0263574177216448	0.926715457081489	375.669932833328	0	10.684713705255						306	29	2	NaN	NaN	NaN	0.023059	1	7807	69.905	29.702	1	74321			14287	1161;920	12025	12348	14287	14287	309	
MLNFNVPHIK	10	Unmodified	_MLNFNVPHIK_			0	0	0	Q8WVM8	Q8WVM8	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.890109	1211.6485	-2.2485	-0.00091039	-0.99709	-0.00040371	-3.2456	-0.0013141	404.89002068045	11.128	0.079824	11.128	11.092	11.172	0	846	19	0.755468431110051	0.0123035321280257	0.755468431110051	459.049008473138	0	7.47605590320796						93	10	2	NaN	NaN	NaN	0.065546	1	9785	16.457	14.487	1	20166			14288	2381	12026	12349	14288	14288		
MLNGLEDSIGLSK	13	Unmodified	_MLNGLEDSIGLSK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.858135	1375.70172	1.018	0.00070127	-0.99492	-0.00068536	0.023097	1.591E-05	688.858326310453	12.529	0.16848	12.529	12.485	12.653	0	477	34	1.0055473068722	0.0221701170870099	1.0055473068722	406.793399623446	0	8.96890403687479						251	20	3	NaN	NaN	NaN	0.00041912	1	14672	73.655	43.062	1	98427			14289	1055	12027	12350	14289	14289		
MLNHVLNICEK	11	Unmodified	_MLNHVLNICEK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.568819	1369.68463	-1.2747	-0.00058327	-0.20697	-9.4703E-05	-1.4817	-0.00067797	457.568788074948	7.9083	0.14185	7.9083	7.8552	7.997	0	813	46	0.778007628350577	0.0307010454640114	0.778007628350577	472.130757294857	0	18.6308042703869						366	17	4	NaN	NaN	NaN	0.003555	1	14478	60.547	35.727	1	101160			14290	2836	12028	12351	14290	14290		
MLNHVLNICEK	11	Unmodified	_MLNHVLNICEK_			0	0	0	Q9GZZ1	Q9GZZ1	Q9GZZ1	NAA50	N-alpha-acetyltransferase 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.84959	1369.68463	1.7048	0.0011692	0.87809	0.00060224	2.5829	0.0017715	685.849963720667	7.9083	0.21283	7.9083	7.7664	7.9793	8.8818E-16	450	40	1.02367897599655	0.026172110670738	1.02367897599655	414.14664522253	0	10.5883700719037						302	25	4	NaN	NaN	NaN	0.00051159	1	14480	90.263	69.174	1	79664			14291	2836	12028	12351	14291	14291		
MLNIHPSLLPSFK	13	Unmodified	_MLNIHPSLLPSFK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.614645	1495.82211	-0.068622	-3.4284E-05	-0.92878	-0.00046403	-0.99741	-0.00049832	499.614176779955	14.036	0.16844	14.036	13.974	14.143	0	645	25	0.892219381832517	0.0162525902140942	0.892219381832517	540.983865307851	0	9.85451476880803						377	20	4	NaN	NaN	NaN	0.0037971	1	18422	41.824	40.321	1	108490			14292	801	12029	12352	14292	14292		
MLNIHPSLLPSFK	13	Unmodified	_MLNIHPSLLPSFK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.918329	1495.82211	1.5803	0.0011835	0.68614	0.00051387	2.2665	0.0016974	748.918807868266	14.036	0.19507	14.036	13.948	14.143	0	360	55	1.08395544855938	0.0361060601880221	1.08395544855938	438.16280255432	0	14.5950025365013						849	23	5	NaN	NaN	NaN	3.8736E-05	1	18423	88.24	78.152	1	295110			14293	801	12029	12352	14293	14293		
MLNTNYHLPPSPK	13	Unmodified	_MLNTNYHLPPSPK_			0	0	0	P03928	P03928	P03928	MT-ATP8	ATP synthase protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.594021	1510.76023	0.29087	0.00014677	0.74765	0.00037726	1.0385	0.00052403	504.594591545307	7.4472	0.32805	7.4472	7.3585	7.6865	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	522.440098721935	0	12.3426987922946						511	38	4	NaN	NaN	NaN	0.00065549	1	18834	58.476	45.302	1	138410			14294	500	12030	12353	14294	14294		
MLPLIWSK	8	Unmodified	_MLPLIWSK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.288431	986.562309	-0.50881	-0.0002515	-4.5766	-0.0022622	-5.0854	-0.0025137	494.286803386642	14.631	0.16846	14.631	14.56	14.728	0	690	40	0.86171403876517	0.0264746954397943	0.86171403876517	349.970406390008	0	10.7522443702944						397	20	3	NaN	NaN	NaN	0.051106	1	3992	39.324	14.473	1	92620			14295	1794	12031	12354	14295	14295		
MLPTIIADNAGYDSADLVAQLR	22	Unmodified	_MLPTIIADNAGYDSADLVAQLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.10175	2346.18895	0.68785	0.0008076	-0.95346	-0.0011195	-0.26561	-0.00031186	1174.60242110434	18.284	0.13301	18.284	18.248	18.381	0	66	61	1.27913350869533	0.0395867663585701	1.27913350869533	515.337121447279	0	15.9487106576069						661	16	5	NaN	NaN	NaN	2.59E-11	1	36012	91.1	83.788	1	164650			14296	1461	12032	12355	14296	14296		
MLPTIIADNAGYDSADLVAQLR	22	Unmodified	_MLPTIIADNAGYDSADLVAQLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.070259	2346.18895	1.0952	0.00085763	-0.72823	-0.00057026	0.36698	0.00028737	783.403720028439	18.284	0.14189	18.284	18.24	18.381	0	423	55	1.04178812298108	0.0361858246299764	1.04178812298108	629.571578562883	0	21.867754326767						609	17	5	NaN	NaN	NaN	5.5778E-06	1	36013	90.376	89.941	1	204770			14297	1461	12032	12355	14297	14297		
MLPTYVCATPDGTEK	15	Unmodified	_MLPTYVCATPDGTEK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.891848	1681.76914	2.2816	0.0019209	-0.36758	-0.00030946	1.914	0.0016114	842.394148670339	9.1326	0.1153	9.1326	9.0794	9.1947	0	378	91	1.07192009927972	0.0601602214411672	1.07192009927972	432.858332863243	0	24.2936513413689						505	14	4	NaN	NaN	NaN	2.6191E-06	1	23955	114.93	101.76	1	128730			14298	1223	12033	12356	14298	14298		
MLPVDEFLPVMFDK	14	Unmodified	_MLPVDEFLPVMFDK_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.92242	1679.83029	1.7958	0.0015101	-0.16541	-0.00013909	1.6304	0.001371	841.424143237996	20.004	0.062097	20.004	19.986	20.049	0	342	49	1.09598084995137	0.0320633273286326	1.09598084995137	442.578619491065	0	12.9478020952885						308	8	6	NaN	NaN	NaN	8.8064E-08	1	23906	110.44	91.628	1	156960			14299	2289	12034	12357	14299	14299		
MLPVDEFLPVMFDK	14	Oxidation (M)	_MLPVDEFLPVM(Oxidation (M))FDK_	MLPVDEFLPVM(1)FDK	M(-51)LPVDEFLPVM(51)FDK	0	1	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.919877	1695.8252	1.1093	0.00094172	-1.8146	-0.0015404	-0.70527	-0.00059871	849.420756184238	18.94	0.09754	18.94	18.905	19.002	0	357	46	1.08596037261705	0.0300821596276293	1.08596037261705	438.498315753675	0	12.1468302744416						278	12	3	NaN	NaN	NaN	0.0099346	1	24366	52.863	37.888	2	67540			14300	2289	12034	12358	14300	14300	592;593	
MLPVDEFLPVMFDK	14	Oxidation (M)	_M(Oxidation (M))LPVDEFLPVMFDK_	M(1)LPVDEFLPVMFDK	M(59)LPVDEFLPVM(-59)FDK	0	1	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.919877	1695.8252	1.4354	0.0012186	0.22559	0.00019151	1.661	0.0014101	848.920707392554	19.525	0.11528	19.525	19.454	19.57	0	342	40	1.09598084995137	0.0260460676127405	1.09598084995137	442.544461992118	0	10.5171025380618						272	14	4	NaN	NaN	NaN	0.0010994	1	24370	58.889	50.888	2	51482			14301	2289	12034	12358	14301	14301	592;593	
MLQEDELR	8	Unmodified	_MLQEDELR_			0	0	0	P84085	P84085	P84085	ARF5	ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.252774	1032.491	0.85765	0.00044362	0.99232	0.00051328	1.85	0.0009569	517.253422461641	5.8687	0.17741	5.8687	5.8243	6.0017	0	651	37	0.888155670855968	0.0243856529681402	0.888155670855968	360.488480524356	0	9.89775472199256						333	21	3	NaN	NaN	NaN	0.00042104	1	5053	117.62	68.563	1	136730			14302	1483	12035	12359	14302	14302		
MLQEDELRDAVLLVFANK	18	Unmodified	_MLQEDELRDAVLLVFANK_			0	0	1	P84085	P84085	P84085	ARF5	ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.041752	2103.10343	0.36651	0.00025731	-0.77763	-0.00054593	-0.41112	-0.00028863	702.375157327524	19.525	0.07981	19.525	19.499	19.579	0	528	28	0.971237000454584	0.0181869004475753	0.971237000454584	587.335258049596	0	10.9981475813827						180	10	5	NaN	NaN	NaN	0.00061392	1	33365	58.338	52.722	1	41161			14303	1483	12036	12360	14303	14303		
MLQHIDYR	8	Unmodified	_MLQHIDYR_			0	0	0	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.183293	1074.52805	-0.60296	-0.00021657	-0.11096	-3.9857E-05	-0.71393	-0.00025643	359.183330614173	4.7514	0.1596	4.7514	4.7159	4.8755	0	867	28	0.741107305531458	0.0184746054874579	0.741107305531458	450.968117860599	0	11.2419051906679						245	19	4	NaN	NaN	NaN	0.0096248	1	6060	53.679	38.181	1	74579			14304	701	12037	12361	14304	14304		
MLQPCGPPADKPEEN	15	Unmodified	_MLQPCGPPADKPEEN_			0	0	1	Q9BWJ5	Q9BWJ5	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.879272	1681.74399	3.0596	0.0025758	-2.4112	-0.00203	0.64833	0.00054581	841.877599172708	5.7357	0.2483	5.7357	5.6559	5.9041	0	378	82	1.07192009927972	0.0542151514483207	1.07192009927972	432.858393010006	0	21.8929408530385						1254	29	5	NaN	NaN	NaN	1.3842E-06	1	23951	137.58	130.02	1	388750			14305	2780	12038	12362	14305	14305		
MLQQVPENINFPAEEEK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MLQQVPENINFPAEEEK_			1	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.49605	2056.97756	0.58227	0.00059944	1.5913	0.0016382	2.1736	0.0022377	1030.00018297043	16.918	0.23945	16.918	16.839	17.078	0	129	112	1.23753038177212	0.0734416109266958	1.23753038177212	498.988682935833	0	29.612632747263						1817	28	5	NaN	NaN	NaN	0.0014304	1	32659	72.327	70.617	1	413170			14306	1036	12039	12363	14306	14306		
MLSCAGADR	9	Unmodified	_MLSCAGADR_			0	0	0	P27635;Q96L21	P27635	P27635	RPL10;RPL10L	60S ribosomal protein L10;60S ribosomal protein L10-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.718044	979.421535	1.2565	0.0006166	0.30588	0.0001501	1.5624	0.0007667	490.71815034752	2.9868	0.28374	2.9868	2.9158	3.1996	0	729	40	0.835224628594324	0.0265151904858787	0.835224628594324	339.246166490513	0	10.7697694945118						681	33	4	NaN	NaN	NaN	0.0030766	1	3821	72.038	65.276	1	261230			14307	864	12040	12364	14307	14307		
MLSEYLR	7	Unmodified	_MLSEYLR_			0	0	0	Q8TF40;Q9P278	Q8TF40	Q8TF40	FNIP1;FNIP2	Folliculin-interacting protein 1;Folliculin-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.236396	910.458238	-0.069834	-3.1861E-05	-3.5996	-0.0016423	-3.6694	-0.0016741	456.234788463636	10.064	0.35467	10.064	9.9839	10.339	0	729	46	0.835224628594324	0.0305944526295086	0.835224628594324	339.601765652619	0	12.4396836209712						994	41	4	NaN	NaN	NaN	0.021427	1	2514	56.89	23.919	1	1011200			14308	2358	12041	12365	14308	14308		
MLSFQGLAELAHR	13	Unmodified	_MLSFQGLAELAHR_			0	0	0	O15294	O15294	O15294	OGT	UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.594133	1471.76057	-1.46	-0.00071771	-1.165	-0.0005727	-2.625	-0.0012904	491.593458606708	14.923	0.097541	14.923	14.879	14.976	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	501.553174159231	0	11.1381487469219						187	12	3	NaN	NaN	NaN	0.00061823	1	17649	87.942	73.947	1	53247			14309	161	12042	12366	14309	14309		
MLSLDFLDDVR	11	Unmodified	_MLSLDFLDDVR_			0	0	0	P67812	P67812	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.334295	1322.65404	0.79896	0.00052918	-0.26943	-0.00017846	0.52953	0.00035073	662.334224410411	18.355	0.1064	18.355	18.319	18.426	0	468	34	1.01159370163332	0.022167054085688	1.01159370163332	409.402722716976	0	8.97124238974817						283	13	4	NaN	NaN	NaN	4.4089E-05	1	13068	83.358	59.237	1	96968			14310	1441	12043	12367	14310	14310		
MLSLDFLDDVRR	12	Unmodified	_MLSLDFLDDVRR_			0	0	1	P67812	P67812	P67812	SEC11A	Signal peptidase complex catalytic subunit SEC11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.925659	1478.75515	-2.5831	-0.0012759	-0.22309	-0.00011019	-2.8062	-0.001386	493.92554165706	15.934	0.12412	15.934	15.899	16.023	0	783	25	0.798467866007927	0.0163568017170922	0.798467866007927	484.190185491413	0	9.91874963865672						271	15	4	NaN	NaN	NaN	0.00037864	1	17866	107.08	92.623	1	105450			14311	1441	12044	12368	14311	14311		
MLSSGVCTSTVQLPGK	16	Unmodified	_MLSSGVCTSTVQLPGK_			0	0	0	Q8TC12	Q8TC12	Q8TC12	RDH11	Retinol dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.92094	1663.82733	3.2924	0.0027423	-2.6586	-0.0022144	0.6338	0.00052791	832.919145832079	9.7356	0.13303	9.7356	9.6558	9.7889	0	345	43	1.09397730668811	0.0280515443878693	1.09397730668811	441.80432173298	0	11.3286568798803						343	16	4	NaN	NaN	NaN	2.1547E-06	1	23452	70.806	54.518	1	99116			14312	2340	12045	12369	14312	14312		
MLSTLSQCEFSMGK	14	Unmodified	_MLSTLSQCEFSMGK_			0	0	0	Q6I9Y2	Q6I9Y2	Q6I9Y2	THOC7	THO complex subunit 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.867319	1617.72009	1.6029	0.0012981	3.5382	0.0028654	5.141	0.0041636	809.870210626378	11.562	0.062111	11.562	11.536	11.598	0	381	28	1.06991323971056	0.0180617378392283	1.06991323971056	432.187686896009	0	7.29597541962369						122	8	3	NaN	NaN	NaN	0.055964	1	22123	48.701	44.718	1	26381			14313	2034	12046	12370	14313	14313		
MLTAQDMSYDEAR	13	Unmodified	_MLTAQDMSYDEAR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.831791	1529.64903	2.3193	0.0017762	3.3004	0.0025275	5.6197	0.0043037	765.83376599632	8.2898	0.15085	8.2898	8.2454	8.3963	0	432	82	1.035754240522	0.0542450724099659	1.035754240522	418.593730627673	0	21.922813675194						467	18	5	NaN	NaN	NaN	2.0724E-12	1	19407	157.77	155.47	1	146400			14314	1511	12047	12371	14314	14314		
MLTEAIMHDCVVK	13	Unmodified	_MLTEAIMHDCVVK_			0	0	0	Q04637;O43432	Q04637;O43432	Q04637	EIF4G1;EIF4G3	Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.25239	1545.73534	0.48124	0.00024844	-0.76549	-0.00039518	-0.28425	-0.00014675	516.252783232049	9.842	0.21278	9.842	9.78	9.9928	0	732	52	0.833184998970724	0.0346640784311575	0.833184998970724	505.039871666076	0	21.0118301984811						640	25	5	NaN	NaN	NaN	0.0024818	1	19904	72.922	52.739	1	272640			14315	1544;202	12048	12372	14315	14315		
MLTEAIMHDCVVK	13	Unmodified	_MLTEAIMHDCVVK_			0	0	0	Q04637;O43432	Q04637;O43432	Q04637	EIF4G1;EIF4G3	Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.874947	1545.73534	2.8157	0.002179	-0.53257	-0.00041214	2.2832	0.0017669	773.875127829695	9.842	0.15072	9.842	9.7977	9.9484	0	363	40	1.08195024817156	0.0260712032771278	1.08195024817156	437.222764061694	0	10.5355339383707						480	18	5	NaN	NaN	NaN	1.5671E-07	1	19907	129.69	116.51	1	146300			14316	1544;202	12048	12372	14316	14316		
MLTFLMLVR	9	Unmodified	_MLTFLMLVR_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.321948	1122.62934	-0.72875	-0.00040979	-1.4888	-0.00083716	-2.2175	-0.001247	562.320981524666	18.763	0.062067	18.763	18.745	18.807	0	633	19	0.900343422309015	0.0121843709142423	0.900343422309015	365.049001290277	0	4.94021761406037						76	8	3	NaN	NaN	NaN	0.0039318	1	7346	78.178	51.955	1	13052			14317	2175	12049	12373	14317	14317		
MLTGPVYSQSTALTHK	16	Unmodified	_MLTGPVYSQSTALTHK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.634545	1732.88181	0.79389	0.00045937	0.2421	0.00014009	1.036	0.00059946	578.63471299977	8.0059	0.17749	8.0059	7.9261	8.1036	0	621	49	0.908462957275599	0.032478149233901	0.908462957275599	550.142411580339	0	19.6679536574478						609	21	5	NaN	NaN	NaN	4.0177E-07	1	25410	136.06	111.31	1	179650			14318	2175	12050	12374	14318	14318		
MLTGPVYSQSTALTHK	16	Unmodified	_MLTGPVYSQSTALTHK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.448179	1732.88181	2.667	0.0023134	-1.1655	-0.001011	1.5015	0.0013025	867.447379163092	8.0059	0.11532	8.0059	7.9527	8.068	0	252	40	1.15595906938629	0.0259387539969269	1.15595906938629	466.682061930606	0	10.4719548639586						358	14	4	NaN	NaN	NaN	5.421E-09	1	25411	121.71	97.875	1	81643			14319	2175	12050	12374	14319	14319		
MLTNHTFIK	9	Unmodified	_MLTNHTFIK_			0	0	0	P36507	P36507	P36507	MAP2K2	Dual specificity mitogen-activated protein kinase kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.797152	1103.57975	1.2451	0.00068827	1.5541	0.00085909	2.7991	0.0015474	552.79724387284	5.8066	0.15959	5.8066	5.7534	5.913	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	371.709181240332	0	8.2251497742069						301	19	3	NaN	NaN	NaN	0.001773	1	6817	72.042	45.585	1	96122			14320	984	12051	12375	14320	14320		
MLVDDIGDVTITNDGATILK	20	Unmodified	_MLVDDIGDVTITNDGATILK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.54574	2103.07694	1.0743	0.0011308	-0.71235	-0.00074978	0.36197	0.00038099	1053.04673895102	16.972	0.2749	16.972	16.918	17.193	0	90	124	1.26329880838669	0.0813143606727298	1.26329880838669	509.303992313838	0	32.7822113407645						2293	32	6	NaN	NaN	NaN	1.844E-37	1	33364	191.98	171.37	1	873040			14321	747	12052	12376	14321	14321		
MLVDDIGDVTITNDGATILK	20	Oxidation (M)	_M(Oxidation (M))LVDDIGDVTITNDGATILK_	M(1)LVDDIGDVTITNDGATILK	M(120)LVDDIGDVTITNDGATILK	0	1	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.5432	2119.07185	0.63609	0.0006746	-0.92363	-0.00097955	-0.28755	-0.00030495	1061.04348953635	15.783	0.14188	15.783	15.73	15.872	0	81	85	1.2692388538616	0.0554898605326481	1.2692388538616	511.673408211904	0	22.3698525880765						1028	17	5	NaN	NaN	NaN	1.9778E-15	1	33607	120.75	110.42	1	255230			14322	747	12052	12377	14322	14322	250	
MLVDVFAPEFR	11	Unmodified	_MLVDVFAPEFR_			0	0	0	Q2M389	Q2M389	Q2M389	KIAA1033	WASH complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.341923	1322.66929	-0.071267	-4.7203E-05	-0.35405	-0.0002345	-0.42532	-0.00028171	662.341469497699	17.122	0.15075	17.122	17.078	17.229	0	528	49	0.971237000454584	0.0323345110128962	0.971237000454584	393.069890290342	0	13.0861187233211						363	18	3	NaN	NaN	NaN	0.0054021	1	13071	34.953	22.886	1	72885			14323	1922	12053	12378	14323	14323		
MLVLDEADEMLNK	13	Unmodified	_MLVLDEADEMLNK_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.870385	1519.72622	1.3088	0.00099585	0.40769	0.0003102	1.7165	0.001306	760.870751618153	15.712	0.30148	15.712	15.642	15.943	0	441	67	1.02971785871157	0.0442576592697037	1.02971785871157	416.178543651987	0	17.8875096945079						901	35	3	NaN	NaN	NaN	1.5252E-11	1	19124	183.13	155.54	1	708020			14324	1008	12054	12379	14324	14324		
MLVLDEADEMLNK	13	Oxidation (M)	_M(Oxidation (M))LVLDEADEMLNK_	M(1)LVLDEADEMLNK	M(53)LVLDEADEM(-53)LNK	0	1	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.867842	1535.72113	2.249	0.0017292	1.2489	0.00096022	3.4979	0.0026894	768.86770895425	13.54	0.17734	13.54	13.434	13.611	0	438	43	1.03173026378327	0.0281678436132822	1.03173026378327	416.95268617867	0	11.3834579353639						424	21	4	NaN	NaN	NaN	0.00017199	1	19598	61.577	56.427	2	156830			14325	1008	12054	12380	14325	14325	364	
MLVLVLGDLHIPHR	14	Unmodified	_MLVLVLGDLHIPHR_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.316711	1611.9283	-0.47173	-0.00025394	-1.5371	-0.00082742	-2.0088	-0.0010814	538.315974703163	15.322	0.23067	15.322	15.269	15.5	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	518.441228096244	0	9.87265033900485						302	27	3	NaN	NaN	NaN	0.009776	1	21960	50.297	47.194	1	72494			14326	3183	12055	12381	14326	14326		
MLVQCMQDQEHPSIR	15	Unmodified	_MLVQCMQDQEHPSIR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.43168	1870.84881	1.8912	0.001771	-0.33845	-0.00031693	1.5528	0.0014541	936.431816232696	7.5979	0.10641	7.5979	7.5624	7.6688	0	249	37	1.15795408347545	0.023945110479074	1.15795408347545	467.213784615962	0	9.66142427374814						315	13	5	NaN	NaN	NaN	8.9387E-09	1	28954	82.437	75.23	1	81902			14327	74	12056	12382	14327	14327		
MLVQCMQDQEHPSIR	15	Unmodified	_MLVQCMQDQEHPSIR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.623546	1870.84881	0.69689	0.00043529	1.014	0.00063337	1.7109	0.0010687	624.624386274692	7.6068	0.13314	7.6068	7.5624	7.6956	0	633	34	0.900343422309015	0.0223395647977513	0.900343422309015	544.906564233828	0	13.5203692266701						429	16	5	NaN	NaN	NaN	1.361E-06	1	28955	95.138	84.166	1	191860			14328	74	12056	12382	14328	14328		
MLVSGAGDIK	10	Unmodified	_MLVSGAGDIK_			0	0	0	P40227;Q92526	P40227;Q92526	P40227	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.76806	989.521567	0.56924	0.00028221	0.10881	5.3942E-05	0.67804	0.00033615	495.768686452054	6.6313	0.2217	6.6313	6.5515	6.7732	0	699	55	0.85560534332665	0.0366598233123934	0.85560534332665	347.475152451705	0	14.888146496139						691	26	4	NaN	NaN	NaN	0.0010362	1	4045	67.507	33.694	1	700570			14329	1016;2407	12057	12383	14329	14329		
MLVSGAGDIK	10	Oxidation (M)	_M(Oxidation (M))LVSGAGDIK_	M(1)LVSGAGDIK	M(41)LVSGAGDIK	0	1	0	P40227;Q92526	P40227;Q92526	P40227	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.765517	1005.51648	1.1941	0.00060154	-0.53863	-0.00027134	0.65546	0.0003302	503.765851896297	5.0617	0.2128	5.0617	4.9908	5.2036	0	693	43	0.85967808974117	0.028505272317873	0.85967808974117	349.053011075155	0	11.5739266276595						389	25	3	NaN	NaN	NaN	0.033043	1	4407	40.502	14.279	1	111060			14330	1016;2407	12057	12384	14330	14330	369	
MLVTFDEELRPLPVSVR	17	Unmodified	_MLVTFDEELRPLPVSVR_			0	0	1	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.699437	2000.07648	1.0737	0.00071689	-1.9927	-0.0013305	-0.91901	-0.00061362	668.032760200339	15.562	0.14189	15.562	15.508	15.65	0	579	61	0.936845902828289	0.0404965510493797	0.936845902828289	566.729179132956	0	24.4977077496354						741	17	5	NaN	NaN	NaN	9.3278E-06	1	31644	50.314	42.738	1	247270			14331	1642	12058	12385	14331	14331		
MLVVGGIDR	9	Unmodified	_MLVVGGIDR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.27077	958.526987	0.12687	6.0932E-05	-1.169	-0.00056146	-1.0422	-0.00050053	480.27075568535	8.9908	0.28392	8.9908	8.8842	9.1681	0	696	49	0.857641857947968	0.0325910336061924	0.857641857947968	348.456588175401	0	13.2416116007862						438	33	4	NaN	NaN	NaN	0.00047156	1	3412	101.41	83.717	1	184050			14332	1801	12059	12386	14332	14332		
MLYLIGLGLGDAK	13	Unmodified	_MLYLIGLGLGDAK_			0	0	0	Q9H2P9	Q9H2P9	Q9H2P9	DPH5	Diphthine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.386331	1362.75811	0.59916	0.00040886	-0.63488	-0.00043324	-0.035719	-2.4374E-05	682.385860324049	17.858	0.079781	17.858	17.832	17.912	0	468	31	1.01159370163332	0.0201532590468485	1.01159370163332	409.278133644562	0	8.15375603489008						183	10	3	NaN	NaN	NaN	0.00020891	1	14286	70.389	59.687	1	42736			14333	2872	12060	12387	14333	14333		
MMADEALGSGLVSR	14	Unmodified	_MMADEALGSGLVSR_			0	0	0	Q13011	Q13011	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.847244	1435.67993	2.1049	0.0015131	-1.1847	-0.0008516	0.9202	0.00066149	718.847181321972	11.039	0.24828	11.039	10.95	11.199	0	474	40	1.00756305028564	0.0262010489671465	1.00756305028564	407.439396861691	0	10.5952075011994						643	29	5	NaN	NaN	NaN	1.2467E-07	1	16554	99.589	88.229	1	237710			14334	1618	12061	12388	14334	14334		
MMAIAPNVTVMVGELVGAR	19	Unmodified	_MMAIAPNVTVMVGELVGAR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.014849	1958.01514	0.96837	0.00094902	1.1767	0.0011532	2.1451	0.0021022	980.518017559578	20.004	0.079824	20.004	19.96	20.04	0	189	64	1.1977968526266	0.0417803672711903	1.1977968526266	483.131228030946	0	16.8521065179377						267	10	4	NaN	NaN	NaN	0.0012572	1	30869	44.16	33.675	1	61982			14335	3357	12062	12389	14335	14335		
MMASGLTER	9	Unmodified	_MMASGLTER_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.23607	994.457586	1.1329	0.00056445	1.8037	0.00089865	2.9366	0.0014631	498.237230052752	5.1238	0.097525	5.1238	5.0617	5.1593	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	347.45149731097	0	8.27062718423593						180	12	3	NaN	NaN	NaN	0.0016348	1	4145	60.589	38.661	1	81991			14336	3202	12063	12390	14336	14336		
MMCGAPSATQPATAETQHIADQVR	24	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MMCGAPSATQPATAETQHIADQVR_			1	0	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.733323	2612.17814	2.2038	0.0019211	1.442	0.0012571	3.6458	0.0031782	872.068702921552	12.316	0.088671	12.316	12.281	12.369	1.7764E-15	351	58	1.08996939197032	0.0380935733737338	1.08996939197032	658.293538432041	0	23.0068416530347						285	11	2	NaN	NaN	NaN	2.426E-06	1	37287	67.251	65.915	1	189480			14337	505	12064	12391	14337	14337		
MMCGAPSATQPATAETQHIADQVR	24	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))MCGAPSATQPATAETQHIADQVR_	M(0.692)M(0.308)CGAPSATQPATAETQHIADQVR	M(3.5)M(-3.5)CGAPSATQPATAETQHIADQVR	1	1	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	877.064961	2628.17306	3.1546	0.0027668	-0.45487	-0.00039895	2.6998	0.0023679	877.399281239636	10.853	0.1419	10.853	10.782	10.924	0	345	31	1.09397730668811	0.0200395758714129	1.09397730668811	660.692865154102	0	12.1026320363439						404	17	4	NaN	NaN	NaN	1.9691E-06	1	37351	45.587	45.548	2	120940			14338	505	12064	12392	14338	14338	85	
MMDSLFLK	8	Unmodified	_MMDSLFLK_			0	0	0	O00566	O00566	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.748282	983.48201	0.44322	0.0002184	0.42793	0.00021086	0.87115	0.00042926	492.748820809379	12.884	0.12415	12.884	12.83	12.955	0	708	64	0.849494101904619	0.0428024921166378	0.849494101904619	345.022321950975	0	17.3842469091431						271	15	3	NaN	NaN	NaN	0.065508	1	3910	36.57	21.071	1	50872			14339	91	12065	12393	14339	14339		
MMDYLQGSGETPQTDVR	17	Unmodified	_MMDYLQGSGETPQTDVR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.429858	1926.84516	3.1375	0.0030259	-0.47836	-0.00046135	2.6591	0.0025645	964.430024161694	9.7445	0.22168	9.7445	9.6736	9.8952	-1.7764E-15	231	91	1.16991841121525	0.0598546002807714	1.16991841121525	471.940190112749	0	24.1450952176122						1624	26	6	NaN	NaN	NaN	9.149E-26	1	30206	218.58	210.21	1	907000			14340	1771	12066	12394	14340	14340		
MMDYLQGSGETPQTDVR	17	Oxidation (M)	_MM(Oxidation (M))DYLQGSGETPQTDVR_	M(0.28)M(0.72)DYLQGSGETPQTDVR	M(-4.1)M(4.1)DYLQGSGETPQTDVR	0	1	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.427315	1942.84008	2.7323	0.002657	-1.6458	-0.0016004	1.0866	0.0010566	972.425958101727	8.3076	0.079866	8.3076	8.2721	8.352	0	243	52	1.16194328902838	0.0339012683335864	1.16194328902838	468.69547019525	0	13.674824797269						318	10	4	NaN	NaN	NaN	0.00033055	1	30567	73.305	70.411	2	68075			14341	1771	12066	12395	14341	14341	563	
MMEDAEAPGEQLYQQSR	17	Unmodified	_MMEDAEAPGEQLYQQSR_			0	0	0	Q9UFG5	Q9UFG5	Q9UFG5	C19orf25	UPF0449 protein C19orf25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.932764	1981.85098	1.8881	0.0018729	0.7994	0.00079295	2.6875	0.0026659	992.434769846895	9.2036	0.062096	9.2036	9.177	9.2391	0	195	22	1.19381749893585	0.0139306072345817	1.19381749893585	481.485394450866	0	5.61843324064313						60	8	2	NaN	NaN	NaN	0.054048	1	31308	20.966	19.124	1	6988.4			14342	3201	12067	12396	14342	14342		
MMEIMTR	7	Unmodified	_MMEIMTR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.211009	910.407465	-0.19686	-8.981E-05	-1.52	-0.00069345	-1.7169	-0.00078326	456.211130032059	7.3319	0.31033	7.3319	7.2698	7.5801	0	753	43	0.81889964927511	0.0285885886986983	0.81889964927511	332.964305801239	0	11.6241099850579						846	36	5	NaN	NaN	NaN	0.0034997	1	2509	96.51	45.054	1	591180			14343	1338	12068	12397	14343	14343		
MMEVAAADVK	10	Unmodified	_MMEVAAADVK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.759378	1063.5042	0.79734	0.00042479	2.6286	0.0014004	3.4259	0.0018252	532.76144379041	6.658	0.133	6.658	6.6136	6.7466	0	633	52	0.900343422309015	0.0345056424959307	0.900343422309015	365.29504833903	0	13.9999249521857						267	16	4	NaN	NaN	NaN	0.0038918	1	5810	41.796	31.094	1	66266			14344	2577	12069	12398	14344	14344		
MMGLEVLGEK	10	Unmodified	_MMGLEVLGEK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.782853	1105.55115	0.65293	0.00036158	-2.6231	-0.0014526	-1.9701	-0.001091	553.782099517886	12.946	0.21281	12.946	12.884	13.096	0	684	55	0.86578508874114	0.0366191214696816	0.86578508874114	351.102916088788	0	14.8501983919693						577	25	4	NaN	NaN	NaN	0.00068519	1	6862	74.269	60.274	1	371340			14345	1581	12070	12399	14345	14345		
MMGLEVLGEK	10	Oxidation (M)	_MM(Oxidation (M))GLEVLGEK_	M(0.037)M(0.963)GLEVLGEK	M(-14)M(14)GLEVLGEK	0	1	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.78031	1121.54607	0.18248	0.00010251	0.10684	6.0019E-05	0.28931	0.00016253	561.780680626841	10.126	0.10641	10.126	10.073	10.179	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	349.390600076609	0	7.42843263924749						160	13	2	NaN	NaN	NaN	0.0014063	1	7300	95.311	85.797	2	37134			14346	1581	12070	12400	14346	14346	549	
MMILEVDETR	10	Unmodified	_MMILEVDETR_			0	0	0	Q9NSV4	Q9NSV4	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.870275	1235.58899	-1.2003	-0.00049558	8.8683	0.0036615	7.668	0.0031659	412.873980435448	10.702	0.13303	10.702	10.658	10.791	0	753	31	0.81889964927511	0.0204175783261862	0.81889964927511	497.483561798122	0	12.4037293189643						333	16	4	NaN	NaN	NaN	0.072517	1	10483	10.702	8.5428	1	147910			14347	3039	12071	12401	14347	14347		
MMIPDCQR	8	Unmodified	_MMIPDCQR_			0	0	0	O75347	O75347	O75347	TBCA	Tubulin-specific chaperone A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.730097	1049.44564	1.0534	0.00055378	-1.2335	-0.0006485	-0.18016	-9.4718E-05	525.729922385832	5.9573	0.32814	5.9573	5.9041	6.2323	0	693	49	0.85967808974117	0.0325774564338044	0.85967808974117	348.855707658322	0	13.2198688713175						893	38	5	NaN	NaN	NaN	0.00039983	1	5448	70.67	59.021	1	423140			14348	320	12072	12402	14348	14348		
MMITSQDVLHSWAVPTLGLK	20	Unmodified	_MMITSQDVLHSWAVPTLGLK_			0	0	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.058637	2226.15408	0.47408	0.00035227	-0.48643	-0.00036144	-0.01235	-9.1766E-06	743.392283231199	17.743	0.097536	17.743	17.699	17.796	0	549	67	0.957085760909907	0.0444968965895804	0.957085760909907	578.567869157459	0	26.8988169038039						516	12	5	NaN	NaN	NaN	1.8992E-07	1	34952	74.733	73.638	1	123700			14349	477	12073	12403	14349	14349		
MMITSQDVLHSWAVPTLGLK	20	Unmodified	_MMITSQDVLHSWAVPTLGLK_			0	0	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.058637	2226.15408	1.0813	0.00080349	-0.62456	-0.00046408	0.45677	0.00033941	743.392652219859	17.734	0.16847	17.734	17.69	17.858	0	444	70	1.02770517576159	0.0463365125221681	1.02770517576159	621.258008902842	0	28.0108830703231						786	20	6	NaN	NaN	NaN	6.9345E-11	1	34953	83.061	78.755	1	332500			14350	477	12073	12403	14350	14350		
MMITSQDVLHSWAVPTLGLK	20	Oxidation (M)	_MM(Oxidation (M))ITSQDVLHSWAVPTLGLK_	M(0.289)M(0.711)ITSQDVLHSWAVPTLGLK	M(-3.9)M(3.9)ITSQDVLHSWAVPTLGLK	0	1	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.390275	2242.149	-0.47279	-0.00035383	-0.53342	-0.00039921	-1.0062	-0.00075304	748.724623160032	16.963	0.097556	16.963	16.901	16.998	0	537	82	0.965173861991602	0.0545456492666851	0.965173861991602	583.431412908345	0	32.9719302116183						517	12	3	NaN	NaN	NaN	2.7123E-07	1	35122	59.997	58.628	2	110190			14351	477	12073	12404	14351	14351	72	
MMLDDIVSR	9	Unmodified	_MMLDDIVSR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.264827	1078.5151	-0.34577	-0.00018681	-0.072964	-3.942E-05	-0.41874	-0.00022623	540.264688213276	11.935	0.15961	11.935	11.882	12.041	0	645	37	0.892219381832517	0.0243822699655701	0.892219381832517	361.934485623181	0	9.8908233983766						401	19	5	NaN	NaN	NaN	0.0012821	1	6168	91.783	35.692	1	238590			14352	2446	12074	12405	14352	14352		
MMLDQCLELQLFHR	14	Unmodified	_MMLDQCLELQLFHR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.965132	1832.87357	-0.92255	-0.00056457	-0.84526	-0.00051727	-1.7678	-0.0010818	612.299291211404	16.289	0.11526	16.289	16.262	16.377	0	648	28	0.890187667287968	0.0182879696480781	0.890187667287968	538.842164183966	0	11.0699457045088						207	14	4	NaN	NaN	NaN	3.6952E-06	1	28044	101.48	93.906	1	43732			14353	1703	12075	12406	14353	14353		
MMLGTEGGEGFVVK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MMLGTEGGEGFVVK_			1	0	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.85982	1495.70509	0.7279	0.0005451	1.4098	0.0010558	2.1377	0.0016009	748.861340670606	17.309	0.2483	17.309	17.255	17.504	0	372	64	1.07593298845566	0.0421208396190846	1.07593298845566	434.920225915695	0	17.0263439075193						1263	29	5	NaN	NaN	NaN	3.2361E-08	1	18409	153.33	144.35	1	479080			14354	931	12076	12407	14354	14354		
MMLGTEGGEGFVVK	14	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))MM(Oxidation (M))LGTEGGEGFVVK_	M(0.08)M(0.92)LGTEGGEGFVVK	M(-11)M(11)LGTEGGEGFVVK	1	1	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.857277	1511.7	1.5063	0.00114	1.8319	0.0013865	3.3381	0.0025265	756.858777832802	15.154	0.14189	15.154	15.101	15.242	0	363	40	1.08195024817156	0.0260712032771278	1.08195024817156	437.310130343808	0	10.5376391591093						343	17	4	NaN	NaN	NaN	0.00026707	1	18851	48.701	37.913	2	71301			14355	931	12076	12408	14355	14355	324	
MMNTIIFHTK	10	Unmodified	_MMNTIIFHTK_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.547355	1234.62024	-1.9096	-0.00078781	-1.0091	-0.00041631	-2.9187	-0.0012041	412.547375070879	8.7866	0.097646	8.7866	8.7511	8.8487	0	852	25	0.751366682244005	0.0164092837353766	0.751366682244005	456.461118201995	0	9.96876781969337						188	12	4	NaN	NaN	NaN	0.040396	1	10457	21.088	17.48	1	43212			14356	3340	12077	12409	14356	14356		
MMTPEVLAEAYGK	13	Unmodified	_MMTPEVLAEAYGK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.349088	1438.68362	1.3962	0.0010057	1.8637	0.0013425	3.2599	0.0023483	720.349730775711	13.371	0.22171	13.371	13.247	13.469	0	438	43	1.03173026378327	0.0281756225975058	1.03173026378327	417.203835218495	0	11.3934603064214						475	26	3	NaN	NaN	NaN	0.00047542	1	16631	44.598	38.732	1	126820			14357	2001	12079	12410	14357	14357		
MMVAGFK	7	Unmodified	_MMVAGFK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	392.198228	782.381902	-1.1389	-0.00044669	-1.9604	-0.00076887	-3.0994	-0.0012156	392.197659646094	7.261	0.18621	7.261	7.2166	7.4028	0	882	31	0.730840773481911	0.0205402269243722	0.730840773481911	297.881092354273	0	8.37192649266996						329	22	4	NaN	NaN	NaN	0.056691	1	843	31.058	23.055	1	111550			14358	1509	12080	12411	14358	14358		
MNAEFIMLNHFSQR	14	Unmodified	_MNAEFIMLNHFSQR_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.413617	1736.81268	1.4749	0.0012823	1.3192	0.0011469	2.7941	0.0024292	869.41512231124	13.185	0.11528	13.185	13.159	13.274	0	228	31	1.17191150690002	0.0199295899458025	1.17191150690002	473.1138487683	0	8.04579948922463						210	14	4	NaN	NaN	NaN	3.8239E-08	1	25509	100.69	94.316	1	42471			14359	2691	12081	12412	14359	14359		
MNAGSDPVVIVSAAR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MNAGSDPVVIVSAAR_			1	0	0	Q9BWD1	Q9BWD1	Q9BWD1	ACAT2	Acetyl-CoA acetyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.89304	1527.77153	1.7308	0.0013239	1.3247	0.0010133	3.0556	0.0023372	764.894291013103	14.613	0.11528	14.613	14.568	14.684	0	282	28	1.13599383354359	0.0179798369779736	1.13599383354359	459.110016270451	0	7.26652117621802						261	14	3	NaN	NaN	NaN	0.00043268	1	19356	72.327	70.025	1	73258			14360	2777	12082	12413	14360	14360		
MNALDLNMK	9	Unmodified	_MNALDLNMK_			0	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.259545	1048.50454	0.66655	0.00035011	-4.4158	-0.0023194	-3.7493	-0.0019693	525.259584150212	9.7268	0.15963	9.7268	9.6381	9.7977	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	354.640725519364	0	9.90538411862434						223	19	3	NaN	NaN	NaN	0.0017759	1	5423	77.072	68.889	1	99866			14361	910	12083	12414	14361	14361		
MNALFEGR	8	Unmodified	_MNALFEGR_			0	0	0	Q9H307	Q9H307	Q9H307	PNN	Pinin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.231645	936.448736	-1.5579	-0.00073103	1.97	0.00092437	0.41203	0.00019334	469.232421217237	7.5801	0.15065	7.5801	7.527	7.6777	0	765	37	0.810730346695089	0.0245147306165753	0.810730346695089	329.506388220737	0	9.96355986500413						247	18	3	NaN	NaN	NaN	0.0029694	1	2995	93.561	85.557	1	48226			14362	2877	12084	12415	14362	14362		
MNFESFVK	8	Unmodified	_MNFESFVK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.241678	1000.4688	-0.92724	-0.00046477	1.7214	0.00086282	0.79411	0.00039804	501.242696001867	11.731	0.15074	11.731	11.687	11.837	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	345.768792636273	0	9.92669688357137						260	18	3	NaN	NaN	NaN	0.029851	1	4291	39.324	10.223	1	76352			14363	1063	12085	12416	14363	14363		
MNFGDFLTVMTQK	13	Unmodified	_MNFGDFLTVMTQK_			0	0	0	P41208	P41208	P41208	CETN2	Centrin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.367812	1530.72107	0.42705	0.00032728	-0.6347	-0.00048642	-0.20765	-0.00015914	766.367488840583	19.117	0.088668	19.117	19.091	19.179	0	429	31	1.03776581230406	0.0201143318791703	1.03776581230406	419.404075452759	0	8.12903322224849						214	11	4	NaN	NaN	NaN	3.5675E-05	1	19452	78.043	76.893	1	54090			14364	1029	12086	12417	14364	14364		
MNHTVQTFFSPVNSGQPPNYEMLK	24	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MNHTVQTFFSPVNSGQPPNYEMLK_			1	0	0	Q01628;C9JQL5	Q01628	Q01628	IFITM3	Interferon-induced transmembrane protein 3;Putative dispanin subfamily A member 2d	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	936.775517	2807.30472	0.4246	0.00039776	0.61745	0.00057841	1.042	0.00097617	937.110181574066	17.078	0.088666	17.078	17.034	17.122	0	417	31	1.04580932352505	0.0201060050174831	1.04580932352505	631.390368967459	0	12.1386735047081						239	11	4	NaN	NaN	NaN	0.00027218	1	37917	61.211	58.715	1	42783			14365	1517	12087	12418	14365	14365		
MNLASEPQEVLHIGSAHNR	19	Unmodified	_MNLASEPQEVLHIGSAHNR_			0	0	0	O00151	O00151	O00151	PDLIM1	PDZ and LIM domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	526.515457	2102.03272	-0.89028	-0.00046875	0.59582	0.00031371	-0.29446	-0.00015504	526.766773207248	10.25	0.079784	10.25	10.214	10.294	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	671.801724278313	0	13.1574335986874						223	10	4	NaN	NaN	NaN	2.1906E-07	1	33340	97.084	90.228	1	64804			14366	52	12088	12419	14366	14366		
MNLPGEVTFLPLNK	14	Unmodified	_MNLPGEVTFLPLNK_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.926351	1571.83815	0.9174	0.00072193	-2.3552	-0.0018534	-1.4378	-0.0011315	786.924755307827	16.377	0.14191	16.377	16.307	16.448	0	393	64	1.0618830335572	0.0421847776548527	1.0618830335572	429.050219490939	0	17.0446155932635						562	17	4	NaN	NaN	NaN	0.00010826	1	20732	89.382	83.355	1	197020			14367	3321	12089	12420	14367	14367		
MNQVEDEVFEEFCR	14	Unmodified	_MNQVEDEVFEEFCR_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.384919	1830.75528	2.2278	0.0020415	-0.13985	-0.00012815	2.088	0.0019134	916.385114106396	15.446	0.11538	15.446	15.393	15.508	0	333	34	1.10198982404297	0.0220268393331327	1.10198982404297	444.704871465886	0	8.88886860906126						355	14	4	NaN	NaN	NaN	2.428E-09	1	27990	130.71	128.73	1	84265			14368	1764	12090	12421	14368	14368		
MNREEILAFIK	11	Unmodified	_MNREEILAFIK_			0	0	1	P53611	P53611	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	455.251595	1362.73296	-1.6078	-0.00073197	-0.92884	-0.00042285	-2.5367	-0.0011548	455.251268472194	12.689	0.097554	12.689	12.671	12.768	0	822	19	0.771863999559055	0.012288113713894	0.771863999559055	468.426364770243	0	7.45737129879234						86	12	2	NaN	NaN	NaN	0.0028256	1	14282	61.48	48.206	1	22391			14369	1239	12091	12422	14369	14369		
MNSEEEDEVWQVIIGAR	17	Unmodified	_MNSEEEDEVWQVIIGAR_			0	0	0	Q9NR28	Q9NR28	Q9NR28	DIABLO	Diablo homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.9702	2003.92586	1.2144	0.001218	0.41424	0.00041547	1.6287	0.0016335	1002.9702644824	18.337	0.062052	18.337	18.311	18.373	0	258	34	1.15196821829984	0.0219542113279454	1.15196821829984	464.571324633764	0	8.8538007176673						144	8	3	NaN	NaN	NaN	0.0020803	1	31696	69.327	68.588	1	25559			14370	3010	12092	12423	14370	14370		
MNTLQAIWMMDPK	13	Unmodified	_MNTLQAIWMMDPK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.87749	1577.74043	1.3574	0.0010722	0.36975	0.00029206	1.7272	0.0013642	789.878217909465	17.122	0.25716	17.122	17.034	17.291	0	360	58	1.08395544855938	0.0381093274635713	1.08395544855938	437.95418474704	0	15.3974404231725						1124	30	6	NaN	NaN	NaN	4.7909E-11	1	20896	172.51	165.37	1	458880			14371	1608	12093	12424	14371	14371		
MNVDHEVNLLVEEIHR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MNVDHEVNLLVEEIHR_			1	0	0	Q9P1F3	Q9P1F3	Q9P1F3	ABRACL	Costars family protein ABRACL	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.666796	1987.97856	0.07482	4.9656E-05	-1.31	-0.0008694	-1.2352	-0.00081975	664.000102184337	17.601	0.15959	17.601	17.548	17.708	0	609	34	0.916577990479294	0.0223117043347298	0.916577990479294	554.49167692159	0	13.4976559333198						496	19	5	NaN	NaN	NaN	4.7812E-13	1	31421	174.72	146.39	1	235290			14372	3150	12094	12425	14372	14372		
MNVDHEVNLLVEEIHR	16	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))NVDHEVNLLVEEIHR_	M(1)NVDHEVNLLVEEIHR	M(62)NVDHEVNLLVEEIHR	1	1	0	Q9P1F3	Q9P1F3	Q9P1F3	ABRACL	Costars family protein ABRACL	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.998435	2003.97347	-0.06888	-4.6081E-05	-0.72646	-0.000486	-0.79534	-0.00053208	669.332472721741	15.659	0.12412	15.659	15.606	15.73	0	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	558.140971578448	0	9.81117312829326						338	15	5	NaN	NaN	NaN	3.5899E-05	1	31702	62.398	54.023	1	103850			14373	3150	12094	12426	14373	14373	636	
MNVDQAFHELVR	12	Unmodified	_MNVDQAFHELVR_			0	0	0	P62070	P62070	P62070	RRAS2	Ras-related protein R-Ras2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.910121	1457.70853	-1.361	-0.00066266	-1.18	-0.00057455	-2.541	-0.0012372	486.909700572954	13.309	0.088717	13.309	13.274	13.363	0	753	28	0.81889964927511	0.0183770979161022	0.81889964927511	496.6463777323	0	11.1453450020929						147	11	3	NaN	NaN	NaN	0.011094	1	17182	29.317	23.821	1	34196			14374	1362	12095	12427	14374	14374		
MNVEEDVQEEQSK	13	Unmodified	_MNVEEDVQEEQSK_			0	0	0	P78316	P78316	P78316	NOP14	Nucleolar protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.84341	1563.67227	2.2048	0.001726	-1.3441	-0.0010522	0.86064	0.00067375	782.842016178139	5.9573	0.11532	5.9573	5.9041	6.0195	0	468	40	1.01159370163332	0.0261938098951453	1.01159370163332	408.749622342438	0	10.5840021394589						320	14	4	NaN	NaN	NaN	9.4945E-12	1	20453	162.23	159.75	1	86230			14375	1455	12096	12428	14375	14375		
MNVLADALK	9	Unmodified	_MNVLADALK_			0	0	0	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.770603	973.526652	0.21966	0.00010714	-0.85	-0.0004146	-0.63034	-0.00030746	487.770381525299	11.119	0.25716	11.119	11.057	11.314	0	723	76	0.839303037468863	0.0509412014285627	0.839303037468863	340.931295890451	0	20.692704591696						1032	30	5	NaN	NaN	NaN	0.0041926	1	3717	81.642	75.894	1	1284800			14376	1371	12097	12429	14376	14376		
MNYFQVAK	8	Unmodified	_MNYFQVAK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.74967	999.484787	0.174	8.7128E-05	1.5598	0.00078105	1.7338	0.00086817	500.750410106035	8.2277	0.15082	8.2277	8.1745	8.3253	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	349.908153327449	0	8.2666145880724						249	18	3	NaN	NaN	NaN	0.058794	1	4271	40.203	33.972	1	75645			14377	2452	12098	12430	14377	14377		
MNYSDAIVWLK	11	Unmodified	_MNYSDAIVWLK_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.339381	1338.66421	1.3753	0.00092192	-0.57804	-0.00038748	0.79726	0.00053443	670.339094976512	15.5	0.20408	15.5	15.437	15.642	0	495	73	0.993446994398923	0.0484548443098887	0.993446994398923	402.008839096903	0	19.6077655068304						780	24	6	NaN	NaN	NaN	5.7566E-05	1	13554	114.39	99.632	1	390560			14378	229	12099	12431	14378	14378		
MPCESSPPESADTPTSTR	18	Unmodified	_MPCESSPPESADTPTSTR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.414404	1948.81426	3.2861	0.0032053	-2.5663	-0.0025032	0.71973	0.00070203	975.412253011006	5.0529	0.079777	5.0529	5.0263	5.1061	0	318	16	1.11199926528787	0.0100053074113635	1.11199926528787	448.539696431895	0	4.03577384364456						57	10	2	NaN	NaN	NaN	0.04031	1	30690	17.889	17.15	1	10952			14379	1074	12100	12432	14379	14379		
MPDMHFK	7	Unmodified	_MPDMHFK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.204041	904.39353	-0.84821	-0.00038441	-1.0604	-0.00048057	-1.9086	-0.00086498	453.203873155658	5.9219	0.26608	5.9219	5.8598	6.1259	0	780	46	0.800512323802183	0.0306668752285777	0.800512323802183	325.520186531252	0	12.4703725950433						659	31	4	NaN	NaN	NaN	0.041853	1	2397	33.813	29.997	1	304740			14380	1584	12101	12433	14380	14380		
MPECYIR	7	Unmodified	_MPECYIR_			0	0	0	Q9Y4Z0	Q9Y4Z0	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.720055	967.425558	0.71299	0.0003456	0.217	0.00010518	0.92999	0.00045078	484.720619386803	5.6647	0.20397	5.6647	5.6203	5.8243	0	714	28	0.845418525735192	0.018341368585978	0.845418525735192	343.445612292672	0	7.4510581120976						250	24	3	NaN	NaN	NaN	0.060813	1	3569	42.229	31.401	1	67722			14381	3419	12102	12434	14381	14381		
MPEDESTPEK	10	Unmodified	_MPEDESTPEK_			0	0	0	P37235;P84074;P61601	P37235	P37235	HPCAL1;HPCA;NCALD	Hippocalcin-like protein 1;Neuron-specific calcium-binding protein hippocalcin;Neurocalcin-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.750261	1161.48597	1.2243	0.00071222	-0.0018444	-1.073E-06	1.2224	0.00071115	581.750665252094	2.7562	0.18622	2.7562	2.703	2.8892	0	690	31	0.86171403876517	0.0203552522347787	0.86171403876517	349.244690123088	0	8.24979452499076						294	22	3	NaN	NaN	NaN	0.017881	1	8369	41.796	27.033	1	53407			14382	999	12103	12435	14382	14382		
MPEMHFK	7	Unmodified	_MPEMHFK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.211866	918.40918	-0.16579	-7.6298E-05	-0.46364	-0.00021337	-0.62942	-0.00028967	460.211853945057	5.6913	0.30152	5.6913	5.5937	5.8953	0	750	73	0.820941264895493	0.0490363080759948	0.820941264895493	333.751198273398	0	19.9355633333284						1111	35	4	NaN	NaN	NaN	0.04646	1	2665	49.058	30.103	1	378350			14383	1584	12104	12436	14383	14383		
MPEMNIK	7	Unmodified	_MPEMNIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.711699	861.408845	-1.5056	-0.00064999	0.24995	0.00010791	-1.2557	-0.00054209	431.712252967564	6.4096	0.33694	6.4096	6.3299	6.6668	0	795	64	0.790287188799094	0.0429814748995514	0.790287188799094	321.601959490251	0	17.4910168675286						947	39	5	NaN	NaN	NaN	0.0091249	1	1731	81.32	19.826	1	500210			14384	1584	12105	12437	14384	14384		
MPGAPETAPGDGAGASR	17	Unmodified	_MPGAPETAPGDGAGASR_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.354279	1540.694	2.5154	0.0019403	-1.5251	-0.0011764	0.99038	0.00076393	771.353348900126	4.8489	0.19506	4.8489	4.778	4.9731	0	459	58	1.01763759082241	0.0382991413096786	1.01763759082241	411.245571547755	0	15.4773687604821						397	23	3	NaN	NaN	NaN	0.0020561	1	19729	45.183	43.2	1	77875			14385	301	12106	12438	14385	14385		
MPLATSTDHGHNLQTVQLLIK	21	Unmodified	_MPLATSTDHGHNLQTVQLLIK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.08261	2316.226	0.88756	0.00068616	1.1407	0.00088182	2.0282	0.001568	773.417867767048	11.704	0.133	11.704	11.669	11.802	0	495	37	0.993446994398923	0.0242106659523326	0.993446994398923	600.403843494629	0	14.6320608681694						490	16	5	NaN	NaN	NaN	6.2621E-09	1	35784	92.593	89.688	1	162020			14386	1511	12107	12439	14386	14386		
MPLDDLDREDEVR	13	Unmodified	_MPLDDLDREDEVR_			0	0	1	P57740	P57740	P57740	NUP107	Nuclear pore complex protein Nup107	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.919122	1601.73554	-0.15887	-8.4982E-05	4.8272	0.0025822	4.6684	0.0024972	534.92255170271	9.0351	0.23942	9.0351	8.9198	9.1592	0	708	91	0.849494101904619	0.0612017149629867	0.849494101904619	514.766056748395	0	37.0862674703693						665	28	4	NaN	NaN	NaN	0.0062405	1	21624	27.378	23.071	1	190700			14387	1297	12108	12440	14387	14387		
MPLFEHYTR	9	Unmodified	_MPLFEHYTR_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.530581	1192.56991	-1.83	-0.00072931	2.8251	0.0011259	0.99512	0.00039659	398.532123171031	7.8818	0.17732	7.8818	7.8108	7.9881	0	855	37	0.749315378969369	0.0246070674824295	0.749315378969369	455.392064670756	0	14.9548021845342						283	21	3	NaN	NaN	NaN	0.057381	1	9225	19.256	11.609	1	79539			14388	880	12109	12441	14388	14388		
MPLHTIIPLLQELTK	15	Unmodified	_MPLHTIIPLLQELTK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.011064	1746.01136	-1.7569	-0.0010243	1.4982	0.00087345	-0.25873	-0.00015084	583.012076453935	18.905	0.15958	18.905	18.816	18.976	0	726	43	0.837263974740672	0.0285647467837629	0.837263974740672	506.995862078626	0	17.2970638384114						500	19	3	NaN	NaN	NaN	0.0316	1	25784	50.09	48.716	1	108060			14389	1807	12110	12442	14389	14389		
MPLHTIIPLLQELTK	15	Unmodified	_MPLHTIIPLLQELTK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.012958	1746.01136	1.2801	0.0011188	-1.3726	-0.0011996	-0.092484	-8.0832E-05	874.011800566664	18.914	0.12412	18.914	18.843	18.967	0	288	40	1.13199748998575	0.0259851749816993	1.13199748998575	456.981055982684	0	10.4900698173644						219	15	2	NaN	NaN	NaN	0.0025796	1	25785	34.193	31.108	1	52632			14390	1807	12110	12442	14390	14390		
MPLIGLGTWK	10	Unmodified	_MPLIGLGTWK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.31772	1114.62089	0.47361	0.00026442	-1.7124	-0.00095609	-1.2388	-0.00069167	558.317050624584	15.384	0.39912	15.384	15.242	15.642	0	642	76	0.894250814548268	0.0507576877406148	0.894250814548268	362.61032006477	0	20.5817664327982						1499	46	5	NaN	NaN	NaN	5.4758E-05	1	7127	125.98	0	1	1146500			14391	698	12111	12443	14391	14391		
MPLLNWVALK	10	Unmodified	_MPLLNWVALK_			0	0	0	O95466	O95466	O95466	FMNL1	Formin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.846645	1183.67874	0.015364	9.1085E-06	-1.6177	-0.00095907	-1.6024	-0.00094996	592.845518859839	17.539	0.15076	17.539	17.468	17.619	0	591	28	0.928742107665821	0.0182398570098127	0.928742107665821	376.327720866446	0	7.39081792542407						274	18	3	NaN	NaN	NaN	0.0078323	1	8983	45.489	34.787	1	54114			14392	437	12112	12444	14392	14392		
MPPYDEQTQAFIDAAQEAR	19	Unmodified	_MPPYDEQTQAFIDAAQEAR_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.99949	2179.98443	1.6688	0.0018206	-0.75628	-0.0008251	0.91251	0.00099555	1091.50040547971	14.373	0.399	14.373	14.214	14.613	0	144	76	1.22760721615852	0.0496430860579731	1.22760721615852	494.800227347623	0	20.009177157322						2488	46	6	NaN	NaN	NaN	6.4104E-05	1	34446	62.711	57.629	1	732660			14393	694	12113	12445	14393	14393		
MPPYDEQTQAFIDAAQEAR	19	Unmodified	_MPPYDEQTQAFIDAAQEAR_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.668754	2179.98443	1.1271	0.00082017	0.24985	0.00018181	1.377	0.001002	727.66934164012	14.382	0.31921	14.382	14.24	14.56	0	498	64	0.991429299781895	0.0423423350766804	0.991429299781895	599.407528839847	0	25.5997219763478						734	37	4	NaN	NaN	NaN	2.1659E-07	1	34447	105.08	103.71	1	193490			14394	694	12113	12445	14394	14394		
MPSFGVSAPGK	11	Unmodified	_MPSFGVSAPGK_			0	0	0	Q8IVF2	Q8IVF2	Q8IVF2	AHNAK2	Protein AHNAK2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.273509	1076.53247	0.5807	0.00031315	0.31516	0.00016996	0.89586	0.00048311	539.273775797017	8.7068	0.21304	8.7068	8.6002	8.8133	0	651	67	0.888155670855968	0.0447380789823647	0.888155670855968	360.294381713686	0	18.1487086497737						502	25	2	NaN	NaN	NaN	0.0070814	1	6125	40.386	29.558	1	158000			14395	2197	12114	12446	14395	14395		
MPSHQGAEQQQQQHHVFISQVVTEK	25	Unmodified	_MPSHQGAEQQQQQHHVFISQVVTEK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	967.806867	2900.39877	2.9138	0.00282	-1.6782	-0.0016241	1.2356	0.0011959	968.139387347725	5.7268	0.070955	5.7268	5.7091	5.78	0	366	13	1.07994477139643	0.00802246010372154	1.07994477139643	651.895924930898	0	4.84266342877368						94	9	3	NaN	NaN	NaN	0.0093013	1	38077	18.984	18.429	1	18982			14396	400	12115	12447	14396	14396		
MPSLEISAPK	10	Unmodified	_MPSLEISAPK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.788992	1071.56343	0.86747	0.00046565	1.3902	0.00074622	2.2576	0.0012119	536.78955855375	10.152	0.26603	10.152	10.055	10.321	0	633	79	0.900343422309015	0.0528356152487123	0.900343422309015	365.259928167498	0	21.4348575801629						972	31	3	NaN	NaN	NaN	0.0031317	1	5995	81.163	68.336	1	338940			14397	1584	12116	12448	14397	14397		
MPSLPSYK	8	Unmodified	_MPSLPSYK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.738771	921.462989	-0.38084	-0.00017585	-0.76973	-0.00035542	-1.1506	-0.00053126	461.738956038743	8.281	0.54987	8.281	8.1036	8.6534	0	762	79	0.812773098473386	0.0531226735083097	0.812773098473386	330.414318900776	0	21.5958082500576						1844	63	5	NaN	NaN	NaN	0.00088158	1	2726	105.04	87.346	1	2977400			14398	888	12117	12449	14398	14398		
MPSMNIQTHK	10	Unmodified	_MPSMNIQTHK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	396.195093	1185.56345	-0.49458	-0.00019595	-1.002	-0.00039698	-1.4966	-0.00059293	396.194621031443	5.1238	0.10639	5.1238	5.0617	5.1681	0	879	58	0.732894652678068	0.0390346104516308	0.732894652678068	445.442537885379	0	23.7246593100459						320	13	3	NaN	NaN	NaN	0.0022546	1	9014	59.645	43.188	1	62147			14399	1584	12118	12450	14399	14399		
MPSMNIQTHK	10	Unmodified	_MPSMNIQTHK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.789001	1185.56345	1.9036	0.0011304	3.1766	0.0018863	5.0803	0.0030166	593.791409734221	5.1327	0.15073	5.1327	5.0529	5.2036	0	612	28	0.914549654013882	0.0182550299424538	0.914549654013882	370.570109334436	0	7.39683013600029						211	18	4	NaN	NaN	NaN	0.0039261	1	9015	85.622	65.389	1	45805			14400	1584	12118	12450	14400	14400		
MPSSSDTALGGGGGLSWAEK	20	Unmodified	_MPSSSDTALGGGGGLSWAEK_			0	0	0	Q14004	Q14004	Q14004	CDK13	Cyclin-dependent kinase 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.63164	1906.87309	0.64908	0.00041323	-8.2989	-0.0052834	-7.6499	-0.0048701	636.960678906941	7.9527	0.070934	7.9527	7.9261	7.997	0	651	34	0.888155670855968	0.022351963978809	0.888155670855968	537.455645595018	0	13.5259950758063						205	9	4	NaN	NaN	NaN	0.071529	1	29733	13.345	11.361	1	38387			14401	1712	12119	12451	14401	14401		
MPWSITEK	8	Unmodified	_MPWSITEK_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.249503	990.484453	-0.86114	-0.00042734	2.6945	0.0013371	1.8333	0.00090979	496.250774220487	9.4785	0.14186	9.4785	9.4342	9.576	0	714	28	0.845418525735192	0.0183439172239627	0.845418525735192	343.333532954161	0	7.44966157826366						186	17	2	NaN	NaN	NaN	0.051823	1	4058	42.835	30.008	1	69833			14402	3343	12120	12452	14402	14402		
MQAQWER	7	Unmodified	_MQAQWER_			0	0	0	Q15424	Q15424	Q15424	SAFB	Scaffold attachment factor B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.721444	947.428335	0.078928	3.7469E-05	1.334	0.00063327	1.4129	0.00067074	474.721997874108	4.3169	0.079741	4.3169	4.2904	4.3701	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	335.259436451675	0	6.6347969834253						110	10	3	NaN	NaN	NaN	0.031425	1	3188	63.301	31.174	1	18929			14403	1846	12121	12453	14403	14403		
MQDAENVAVPEAAEER	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQDAENVAVPEAAEER_			1	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.907073	1799.79959	1.8342	0.0016525	0.42441	0.00038235	2.2586	0.0020348	900.907565885716	11.837	0.19511	11.837	11.775	11.97	0	273	64	1.14198628764525	0.0419414306619383	1.14198628764525	460.904922391002	0	16.927534116078						918	23	6	NaN	NaN	NaN	1.5664E-12	1	27198	176.58	157.26	1	395570			14404	1280	12122	12454	14404	14404		
MQDAENVAVPEAAEER	16	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))QDAENVAVPEAAEER_	M(1)QDAENVAVPEAAEER	M(51)QDAENVAVPEAAEER	1	1	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.90453	1815.79451	2.0363	0.0018508	-0.31656	-0.00028772	1.7197	0.0015631	908.903969893658	9.0972	0.14188	9.0972	8.9996	9.1415	0	294	31	1.12800004657306	0.0199927208800443	1.12800004657306	455.229422836638	0	8.06850568384885						283	17	3	NaN	NaN	NaN	0.00016618	1	27618	50.641	46.114	1	57677			14405	1280	12122	12455	14405	14405	453	
MQDPNADTEWNDILR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQDPNADTEWNDILR_			1	0	0	Q9H2J4	Q9H2J4	Q9H2J4	PDCL3	Phosducin-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.415065	1858.81558	1.2183	0.0011336	3.7798	0.0035168	4.9982	0.0046504	930.919722249861	17.495	0.10642	17.495	17.45	17.557	0	270	40	1.14398322290989	0.0259601635966487	1.14398322290989	461.598771223568	0	10.4749609758217						333	13	4	NaN	NaN	NaN	0.0020532	1	28666	63.766	60.03	1	66147			14406	2869	12123	12456	14406	14406		
MQDTSVSFGYQLDLPK	16	Unmodified	_MQDTSVSFGYQLDLPK_			0	0	0	O96008	O96008	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.942927	1827.8713	1.9141	0.0017513	5.3446	0.00489	7.2587	0.0066413	914.948288522602	14.577	0.19507	14.577	14.489	14.684	0	249	76	1.15795408347545	0.0499302854607733	1.15795408347545	467.294614088768	0	20.1494634447902						613	23	4	NaN	NaN	NaN	6.0726E-09	1	27918	100.69	86.894	1	134860			14407	469	12124	12457	14407	14407		
MQEAMTQEVSDVFSDTTTPIK	21	Unmodified	_MQEAMTQEVSDVFSDTTTPIK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1179.54562	2357.07668	0.74177	0.00087495	0.3519	0.00041508	1.0937	0.00129	1180.04687257053	15.721	0.12414	15.721	15.677	15.801	0	66	58	1.27913350869533	0.0376100012347553	1.27913350869533	515.32309775328	0	15.1518994780827						530	15	4	NaN	NaN	NaN	6.2555E-11	1	36111	116.95	114.2	1	108740			14408	753	12125	12458	14408	14408		
MQEAPESATVIFAGDTNLR	19	Unmodified	_MQEAPESATVIFAGDTNLR_			0	0	0	O95551	O95551	O95551	TDP2	Tyrosyl-DNA phosphodiesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.49913	2048.9837	0.76188	0.00078131	0.16324	0.0001674	0.92512	0.00094871	1025.49911560248	13.38	0.079848	13.38	13.336	13.416	0	120	19	1.2434810169581	0.0118988240804605	1.2434810169581	501.401177956228	0	4.7978894159811						109	10	3	NaN	NaN	NaN	5.9762E-05	1	32526	65.212	63.624	1	18367			14409	442	12126	12459	14409	14409		
MQEEVVR	7	Unmodified	_MQEEVVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.723652	889.432752	0.16245	7.2408E-05	2.6923	0.0012	2.8547	0.0012724	445.724922436369	3.2528	0.22165	3.2528	3.2173	3.439	0	741	28	0.827064408645228	0.0183694328474171	0.827064408645228	336.401897643267	0	7.47162131982446						181	26	2	NaN	NaN	NaN	0.011221	1	2140	72.355	54.66	1	39222			14410	1816	12127	12460	14410	14410		
MQEHSDQVPVGNIPR	15	Unmodified	_MQEHSDQVPVGNIPR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.917578	1705.8206	2.8509	0.0024344	-2.7002	-0.0023057	0.15069	0.00012867	853.915275367463	6.2323	0.14194	6.2323	6.1791	6.321	0	324	43	1.1079963157843	0.0280283709863309	1.1079963157843	447.374928006576	0	11.3169965220286						487	17	5	NaN	NaN	NaN	1.5599E-08	1	24650	119.43	115.18	1	152190			14411	952	12128	12461	14411	14411		
MQEIIASVDHIK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQEIIASVDHIK_			1	0	0	O95639	O95639	O95639	CPSF4	Cleavage and polyadenylation specificity factor subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.373952	1424.73335	1.2231	0.00087251	-0.20679	-0.00014752	1.0163	0.00072499	713.37363163739	18.461	0.088745	18.461	18.417	18.506	0	411	28	1.04982941439551	0.0180891625147663	1.04982941439551	424.562234578973	0	7.31545063761951						203	11	4	NaN	NaN	NaN	0.00039574	1	16229	61.577	55.314	1	52662			14412	445	12129	12462	14412	14412		
MQELLQTQDFSK	12	Unmodified	_MQELLQTQDFSK_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.361041	1466.70753	1.3505	0.00099178	-1.5162	-0.0011134	-0.16566	-0.00012166	734.861452564687	10.312	0.23053	10.312	10.223	10.454	0	447	34	1.02569221487577	0.0221425729106015	1.02569221487577	414.686745518186	0	8.95222890895059						312	27	4	NaN	NaN	NaN	0.0038924	1	17478	61.577	40.489	1	99042			14413	2897	12130	12463	14413	14413		
MQELQEAQNAR	11	Unmodified	_MQELQEAQNAR_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.314425	1316.6143	2.2057	0.0014542	0.27423	0.0001808	2.4799	0.001635	659.315348103156	4.2815	0.070932	4.2815	4.2549	4.3258	0	537	25	0.965173861991602	0.0161672517924917	0.965173861991602	390.634643781667	0	6.54336891371753						130	9	3	NaN	NaN	NaN	0.06009	1	12867	40.386	22.916	1	45592			14414	3196	12131	12464	14414	14414		
MQEQQADLQR	10	Unmodified	_MQEQQADLQR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.795869	1245.57718	2.3048	0.0014377	-1.0997	-0.00068601	1.2051	0.00075174	623.794525133228	3.2173	0.133	3.2173	3.173	3.306	0	597	34	0.924688525662974	0.0222962488144068	0.924688525662974	374.470605440338	0	9.02929966238429						267	16	3	NaN	NaN	NaN	7.4057E-06	1	10782	99.855	87.788	1	62601			14415	1736	12132	12465	14415	14415		
MQEVVANLQYDDGSGMK	17	Unmodified	_MQEVVANLQYDDGSGMK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.926951	1883.83935	2.1264	0.0020051	-0.5253	-0.00049532	1.6011	0.0015098	943.428094203874	10.268	0.14187	10.268	10.232	10.374	0	273	46	1.14198628764525	0.0299581571070404	1.14198628764525	460.74767667677	0	12.0869676229199						445	17	4	NaN	NaN	NaN	0.00055547	1	29225	70.552	64.348	1	90358			14416	1884	12133	12466	14416	14416		
MQEVVANLQYDDGSGMK	17	Oxidation (M)	_MQEVVANLQYDDGSGM(Oxidation (M))K_	MQEVVANLQYDDGSGM(1)K	M(-40)QEVVANLQYDDGSGM(40)K	0	1	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.924408	1899.83426	2.4878	0.0023657	-1.8945	-0.0018016	0.59332	0.0005642	951.424880664807	9.0883	0.14188	9.0883	9.0174	9.1592	0	279	40	1.13799159301878	0.0259673060205863	1.13799159301878	459.10771431136	0	10.4761674752884						407	17	4	NaN	NaN	NaN	0.010124	1	29592	49.487	46.402	2	80736			14417	1884	12133	12467	14417	14417	579	
MQEVYNFNAINNSEIR	16	Unmodified	_MQEVYNFNAINNSEIR_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.459807	1940.90506	2.2883	0.002223	-0.98187	-0.00095385	1.3064	0.0012691	971.960868042663	12.219	0.1685	12.219	12.148	12.316	0	258	79	1.15196821829984	0.0518454593782931	1.15196821829984	464.67508865869	0	20.9131580632621						826	20	5	NaN	NaN	NaN	1.8785E-06	1	30525	80.128	75.821	1	167640			14418	614	12134	12468	14418	14418		
MQFESSSYEGYFLACEK	17	Unmodified	_MQFESSSYEGYFLACEK_			0	0	0	Q14116	Q14116	Q14116	IL18	Interleukin-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.43989	2074.86523	1.7863	0.001855	0.4784	0.00049679	2.2647	0.0023518	1038.94211242333	14.258	0.07981	14.258	14.223	14.302	0	195	58	1.19381749893585	0.0378064710753994	1.19381749893585	481.335246416093	0	15.2431900918032						296	10	3	NaN	NaN	NaN	0.013104	1	32942	37.146	37.023	1	61820			14419	1719	12135	12469	14419	14419		
MQGEAHPSASLIDR	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQGEAHPSASLIDR_			1	0	0	Q96SK2	Q96SK2	Q96SK2	TMEM209	Transmembrane protein 209	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.372472	1552.73039	2.3309	0.001812	-0.44239	-0.0003439	1.8885	0.0014681	777.372017073762	8.7156	0.08877	8.7156	8.6623	8.7511	0	336	25	1.09998710857178	0.0160228284041832	1.09998710857178	444.493792759233	0	6.47466475980161						170	11	3	NaN	NaN	NaN	0.00011003	1	20141	78.157	76.654	1	36705			14420	2623	12136	12470	14420	14420		
MQGQEAVLAMSSR	13	Unmodified	_MQGQEAVLAMSSR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.339586	1406.66462	1.7994	0.0012674	-0.74485	-0.00052463	1.0546	0.00074277	704.8412357183	8.1656	0.23957	8.1656	8.068	8.3076	0	492	64	0.995464410099171	0.0423481874794931	0.995464410099171	402.626162257294	0	17.1281745790611						758	28	5	NaN	NaN	NaN	1.8993E-05	1	15668	112.73	100.13	1	151010			14421	1841	12137	12471	14421	14421		
MQILQAVQTNELAFDNAK	18	Unmodified	_MQILQAVQTNELAFDNAK_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.51986	2033.02518	1.1946	0.0012155	4.0924	0.0041641	5.287	0.0053796	1017.52615990554	15.393	0.18632	15.393	15.296	15.482	0	150	46	1.22363604450103	0.0297980967949332	1.22363604450103	493.425265680518	0	12.0159371684815						303	22	4	NaN	NaN	NaN	5.7238E-07	1	32207	88.796	78.037	1	55182			14422	1883	12138	12472	14422	14422		
MQLHGIAQPVTAVALATASLQTEK	24	Unmodified	_MQLHGIAQPVTAVALATASLQTEK_			0	0	0	Q06546	Q06546	Q06546	GABPA	GA-binding protein alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	826.784341	2477.33119	1.2506	0.001034	0.37286	0.00030827	1.6235	0.0013422	827.451412759614	15.978	0.088669	15.978	15.925	16.014	0	258	31	1.15196821829984	0.0199597456368612	1.15196821829984	695.93851229349	0	12.058280309829						173	11	4	NaN	NaN	NaN	0.0087234	1	36719	53.782	53.417	1	31630			14423	1561	12139	12473	14423	14423		
MQLLEIITTEK	11	Unmodified	_MQLLEIITTEK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.867971	1317.72139	0.7191	0.00047451	-0.080934	-5.3406E-05	0.63817	0.00042111	659.868171643924	15.739	0.26602	15.739	15.677	15.943	0	507	52	0.985374541851584	0.0343292904819641	0.985374541851584	398.806983033987	0	13.8939663907732						703	31	4	NaN	NaN	NaN	0.0038487	1	12912	83.438	65.968	1	470010			14424	1026	12140	12474	14424	14424		
MQLSAELQSDTEEILSK	17	Unmodified	_MQLSAELQSDTEEILSK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.474788	1920.93502	0.97504	0.00093748	1.0687	0.0010276	2.0438	0.001965	961.475917418599	16.315	0.20393	16.315	16.253	16.457	0	186	46	1.1997861197946	0.0298431118865883	1.1997861197946	483.999340515408	0	12.0388511199889						639	24	5	NaN	NaN	NaN	4.2166E-14	1	30084	141.87	113.54	1	157880			14425	350	12141	12475	14425	14425		
MQLVQESEEK	10	Unmodified	_MQLVQESEEK_			0	0	0	A0A0B4J2F0	A0A0B4J2F0	A0A0B4J2F0	PIGBOS1		TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.795003	1219.57545	2.1891	0.0013371	-6.8892	-0.0042079	-4.7001	-0.0028708	611.29294723384	5.1327	0.16845	5.1327	5.044	5.2125	0	576	67	0.938871150116794	0.0445400419017329	0.938871150116794	380.303013231837	0	18.0415727361461						458	20	4	NaN	NaN	NaN	0.00055671	1	10002	67.507	46.233	1	78829			14426	1	12142	12476	14426	14426		
MQMLEDEDDLAYAETEK	17	Unmodified	_MQMLEDEDDLAYAETEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.9321	2029.84964	1.4469	0.00147	0.9954	0.0010113	2.4423	0.0024813	1016.43505949026	12.032	0.15077	12.032	11.988	12.139	0	192	61	1.1958073123591	0.0397990191528599	1.1958073123591	482.208591870144	0	16.0489309482917						708	18	6	NaN	NaN	NaN	2.1928E-14	1	32142	184.98	173.77	1	230600			14427	1737	12143	12477	14427	14427		
MQNDAGEFVDLYVPR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQNDAGEFVDLYVPR_			1	0	0	P63220	P63220	P63220	RPS21	40S ribosomal protein S21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.419619	1794.82468	1.6528	0.0014849	-0.23552	-0.00021159	1.4173	0.0012733	898.419530715166	18.559	0.15074	18.559	18.488	18.639	0	186	274	1.1997861197946	0.181174269613247	1.1997861197946	484.243161925911	0	73.1233673483034						3207	18	6	NaN	NaN	NaN	3.8094E-33	1	27092	245.18	239.49	1	1326400			14428	1433	12144	12478	14428	14428		
MQNDAGEFVDLYVPR	15	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))QNDAGEFVDLYVPR_	M(1)QNDAGEFVDLYVPR	M(190)QNDAGEFVDLYVPR	1	1	0	P63220	P63220	P63220	RPS21	40S ribosomal protein S21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.417076	1810.8196	0.75882	0.00068781	1.8149	0.001645	2.5737	0.0023328	906.418902939358	16.918	0.18626	16.918	16.839	17.025	0	192	70	1.1958073123591	0.0457908805043117	1.1958073123591	482.604589829534	0	18.4803093904148						1233	22	5	NaN	NaN	NaN	1.6702E-24	1	27489	185.9	181.09	1	471280			14429	1433	12144	12479	14429	14429	511	
MQNDSILK	8	Unmodified	_MQNDSILK_			0	0	0	Q5JTV8	Q5JTV8	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.744585	947.474617	0.55033	0.00026127	1.288	0.00061145	1.8383	0.00087271	474.746288486614	4.8312	0.19498	4.8312	4.7958	4.9908	0	717	55	0.84338031290707	0.0366751040000942	0.84338031290707	342.718675988393	0	14.903410587477						316	23	2	NaN	NaN	NaN	0.051823	1	3198	34.931	21.379	1	108050			14430	1970	12145	12480	14430	14430		
MQNDTAENETTEK	13	Unmodified	_MQNDTAENETTEK_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.819935	1509.62532	2.1724	0.0016419	-1.1489	-0.00086835	1.0235	0.00077356	755.819132620947	2.171	0.13301	2.171	2.1532	2.2862	0	528	22	0.971237000454584	0.0141434095952221	0.971237000454584	392.566190026789	0	5.71665249180785						102	16	2	NaN	NaN	NaN	1.8021E-07	1	18778	110.58	109.33	1	19430			14431	1554	12146	12481	14431	14431		
MQNWCPSWSEDETLCAR	17	Unmodified	_MQNWCPSWSEDETLCAR_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1085.44297	2168.87139	1.9794	0.0021485	-0.33677	-0.00036554	1.6426	0.001783	1085.94386827673	12.786	0.088667	12.786	12.76	12.848	0	162	55	1.21569043230068	0.0357748946368504	1.21569043230068	490.012936072742	0	14.4199219578625						384	11	4	NaN	NaN	NaN	4.5807E-05	1	34288	73.502	72.983	1	65935			14432	2796	12147	12482	14432	14432		
MQPDQQVVINCAIVR	15	Unmodified	_MQPDQQVVINCAIVR_			0	0	0	P50552	P50552	P50552	VASP	Vasodilator-stimulated phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.953106	1769.89166	2.9584	0.002621	0.55742	0.00049385	3.5158	0.0031148	885.953872612284	10.879	0.11529	10.879	10.844	10.959	0	330	37	1.10399226369747	0.0240243165075487	1.10399226369747	445.628123737696	0	9.6974511881844						281	14	4	NaN	NaN	NaN	6.3494E-05	1	26408	83.214	78.397	1	52546			14433	1166	12148	12483	14433	14433		
MQQHFEFEYQTK	12	Unmodified	_MQQHFEFEYQTK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.245169	1614.71368	0.3321	0.00017908	0.57136	0.00030811	0.90346	0.00048719	539.245370787606	7.6245	0.11534	7.6245	7.589	7.7044	0	708	37	0.849494101904619	0.0244500640244978	0.849494101904619	514.730648063167	0	14.8149319369008						336	14	4	NaN	NaN	NaN	5.228E-05	1	22027	110.88	105.73	1	101710			14434	581	12149	12484	14434	14434		
MQQHFEFEYQTK	12	Unmodified	_MQQHFEFEYQTK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.364115	1614.71368	2.715	0.0021947	0.8505	0.00068751	3.5655	0.0028822	808.364117535205	7.6245	0.18629	7.6245	7.5801	7.7664	0	372	31	1.07593298845566	0.0200644481678189	1.07593298845566	434.626223209212	0	8.10509150804381						386	22	4	NaN	NaN	NaN	2.0601E-05	1	22028	86.838	84.537	1	92879			14435	581	12149	12484	14435	14435		
MQQLEQMLTALDQMR	15	Unmodified	_MQQLEQMLTALDQMR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.444256	1834.87396	1.2809	0.0011764	0.35074	0.00032214	1.6316	0.0014985	918.444481392251	19.011	0.070888	19.011	18.984	19.055	0	300	43	1.12400150285141	0.0279898124125677	1.12400150285141	453.579964808243	0	11.2950188205932						257	9	4	NaN	NaN	NaN	3.6599E-12	1	28095	144.51	129.54	1	48390			14436	1020	12150	12485	14436	14436		
MQQLNAAHQEALMK	14	Unmodified	_MQQLNAAHQEALMK_			0	0	0	Q9BZD4	Q9BZD4	Q9BZD4	NUF2	Kinetochore protein Nuf2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.900342	1611.78613	2.4933	0.0020119	-1.7651	-0.0014242	0.72826	0.00058763	806.899309787272	5.9307	0.062182	5.9307	5.9041	5.9663	0	276	19	1.13998907770044	0.0119840843328791	1.13998907770044	460.508988946186	0	4.84108020641065						83	8	4	NaN	NaN	NaN	2.6932E-08	1	21950	114.93	102.34	1	12514			14437	2806	12151	12486	14437	14437		
MQQNIQELEEQLEEEESAR	19	Unmodified	_MQQNIQELEEQLEEEESAR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1167.03172	2332.04888	1.1464	0.0013379	-4.6214	-0.0053933	-3.475	-0.0040554	1167.52714800671	14.693	0.10642	14.693	14.657	14.764	0	105	94	1.25339330680955	0.061422591219831	1.25339330680955	504.984955653144	0	24.7468087907705						778	13	5	NaN	NaN	NaN	1.064E-05	1	35909	63.947	60.506	1	198180			14438	972	12152	12487	14438	14438		
MQQNIQELEEQLEEEESAR	19	Unmodified	_MQQNIQELEEQLEEEESAR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.356904	2332.04888	0.76479	0.00059528	2.5652	0.0019966	3.33	0.0025919	778.693094734775	14.719	0.097534	14.719	14.657	14.755	0	453	37	1.02166545906632	0.0241705518393689	1.02166545906632	617.433101857479	0	14.607226527387						298	12	4	NaN	NaN	NaN	0.00016056	1	35910	73.305	68.223	1	85003			14439	972	12152	12487	14439	14439		
MQQQLDEYQELLDIK	15	Unmodified	_MQQQLDEYQELLDIK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.980269	1892.91898	0.39337	0.00024861	-1.1472	-0.000725	-0.75381	-0.0004764	631.979453065284	15.579	0.12413	15.579	15.544	15.668	0	645	28	0.892219381832517	0.0182854326605286	0.892219381832517	539.943439224926	0	11.0657755250323						345	15	5	NaN	NaN	NaN	9.8726E-05	1	29441	112.7	105.85	1	121380			14440	493	12153	12488	14440	14440		
MQQQLDEYQELLDIK	15	Unmodified	_MQQQLDEYQELLDIK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.466766	1892.91898	2.5019	0.0023705	-0.0031287	-2.9644E-06	2.4988	0.0023675	947.968414726646	15.579	0.33697	15.579	15.508	15.845	0	228	67	1.17191150690002	0.0438571688460385	1.17191150690002	472.80477263103	0	17.6940653132959						1389	39	7	NaN	NaN	NaN	3.7112E-24	1	29442	203.93	186.51	1	1804700			14441	493	12153	12488	14441	14441		
MQQQLDEYQELLDIK	15	Oxidation (M)	_M(Oxidation (M))QQQLDEYQELLDIK_	M(1)QQQLDEYQELLDIK	M(230)QQQLDEYQELLDIK	0	1	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.464223	1908.91389	1.9033	0.0018186	1.1792	0.0011267	3.0826	0.0029453	955.966995783373	15.056	0.18621	15.056	15.003	15.189	-1.7764E-15	240	49	1.16393748060522	0.0319092676377801	1.16393748060522	469.559036650093	0	12.8729293642259						812	22	7	NaN	NaN	NaN	4.0373E-43	1	29814	234.58	197.63	1	409100			14442	493	12153	12489	14442	14442	79	
MQQYDLQGQPYGTR	14	Unmodified	_MQQYDLQGQPYGTR_			0	0	0	Q969V3	Q969V3	Q969V3	NCLN	Nicalin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.891029	1683.7675	2.5085	0.0021144	-1.7029	-0.0014354	0.80556	0.000679	842.889755466431	7.3496	0.13301	7.3496	7.2964	7.4294	0	381	40	1.06991323971056	0.0260927771036219	1.06991323971056	432.043745128394	0	10.5365750438782						271	16	2	NaN	NaN	NaN	0.00028724	1	24006	91.939	79.357	1	92664			14443	2463	12154	12490	14443	14443		
MQSDDVIWDTLGNK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQSDDVIWDTLGNK_			1	0	0	Q9BXY0	Q9BXY0	Q9BXY0	MAK16	Protein MAK16 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.385245	1662.75594	1.485	0.0012361	1.2981	0.0010805	2.7831	0.0023166	832.386320772846	18.115	0.10637	18.115	18.08	18.186	0	279	52	1.13799159301878	0.0339712685258369	1.13799159301878	459.581985808031	0	13.7194186189952						261	13	4	NaN	NaN	NaN	6.4076E-05	1	23414	71.219	69.235	1	63074			14444	2792	12155	12491	14444	14444		
MQSLSLNK	8	Unmodified	_MQSLSLNK_			0	0	0	Q13442	Q13442	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.747127	919.479702	-1.1161	-0.00051424	-3.2861	-0.0015141	-4.4022	-0.0020283	460.74575810513	5.5139	0.2217	5.5139	5.443	5.6647	0	801	73	0.78619514174348	0.0490636072165918	0.78619514174348	319.61979615936	0	19.9463203278438						568	26	4	NaN	NaN	NaN	0.019299	1	2692	45.489	24.401	1	243340			14445	1669	12156	12492	14445	14445		
MQTPVNIPVPVLR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MQTPVNIPVPVLR_			1	0	0	Q9H840	Q9H840	Q9H840	GEMIN7	Gem-associated protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.429061	1504.84357	0.40369	0.00030415	-1.5744	-0.0011862	-1.1707	-0.00088207	753.427965538721	18.94	0.070931	18.94	18.905	18.976	0	456	40	1.01965166402748	0.0261757253352226	1.01965166402748	412.14690718826	0	10.5803232818838						211	9	3	NaN	NaN	NaN	0.0024622	1	18665	40.533	40.03	1	48110			14446	2921	12157	12493	14446	14446		
MQVDQEEPHVEEQQQQTPAENK	22	Unmodified	_MQVDQEEPHVEEQQQQTPAENK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	874.729401	2621.16637	2.1984	0.001923	-0.5303	-0.00046387	1.6681	0.0014592	875.063464991336	5.3189	0.17739	5.3189	5.2568	5.4342	0	534	163	0.967195187796614	0.109386461110414	0.967195187796614	584.13272658888	0	66.0634095232604						1651	21	6	NaN	NaN	NaN	7.7709E-23	1	37319	161.93	157.49	1	670370			14447	955	12158	12494	14447	14447		
MQYAPNTQVEILPQGHESPIFK	22	Unmodified	_MQYAPNTQVEILPQGHESPIFK_			0	0	0	P40121	P40121	P40121	CAPG	Macrophage-capping protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	843.093175	2526.25769	1.3027	0.0010983	0.042312	3.5673E-05	1.345	0.001134	843.427488035395	13.061	0.11527	13.061	13.008	13.123	0	483	103	1.00151498427745	0.068521167094309	1.00151498427745	604.979848629459	0	41.3912182517529						1104	14	5	NaN	NaN	NaN	9.2498E-12	1	36952	111.75	107.6	1	293060			14448	1014	12159	12495	14448	14448		
MQYGLFLK	8	Unmodified	_MQYGLFLK_			0	0	0	P49643	P49643	P49643	PRIM2	DNA primase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.270238	998.525924	-0.67798	-0.00033917	0.36309	0.00018164	-0.31489	-0.00015753	500.270078302302	12.369	0.097497	12.369	12.334	12.431	0	687	22	0.863749705078866	0.0142476864600277	0.863749705078866	350.73933601089	0	5.78550019675572						145	12	3	NaN	NaN	NaN	0.018576	1	4255	38.322	27.494	1	31309			14449	1141	12160	12496	14449	14449		
MRAEDGENYDIK	12	Unmodified	_MRAEDGENYDIK_			0	0	1	O75347	O75347	O75347	TBCA	Tubulin-specific chaperone A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.824823	1439.63509	2.9519	0.0021278	-1.356	-0.00097742	1.5959	0.0011504	720.823556436931	4.1307	0.2217	4.1307	4.0864	4.3081	0	477	73	1.0055473068722	0.0484079716427138	1.0055473068722	406.613608247199	0	19.5747528565293						762	26	5	NaN	NaN	NaN	0.0073201	1	16654	80.623	69.921	1	243760			14450	320	12161	12497	14450	14450		
MRAEDGENYDIK	12	Unmodified	_MRAEDGENYDIK_			0	0	1	O75347	O75347	O75347	TBCA	Tubulin-specific chaperone A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.885641	1439.63509	-0.27135	-0.00013049	2.1102	0.0010148	1.8389	0.00088428	480.886464687441	4.1307	0.14189	4.1307	4.0864	4.2283	0	777	34	0.802556497112065	0.0224859096742921	0.802556497112065	486.791932005183	0	13.6388646190404						356	17	5	NaN	NaN	NaN	0.0005802	1	16655	99.174	82.522	1	101630			14451	320	12161	12497	14451	14451		
MREDYDSVEQDGDEPGPQR	19	Unmodified	_MREDYDSVEQDGDEPGPQR_			0	0	1	Q9Y5S9	Q9Y5S9	Q9Y5S9	RBM8A	RNA-binding protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.646678	2221.9182	0.26053	0.00019322	2.3729	0.0017598	2.6334	0.0019531	741.983033663798	5.3544	0.062046	5.3544	5.3189	5.381	0	657	31	0.884090832094921	0.0203270164952024	0.884090832094921	534.448012408789	0	12.2880287518865						176	8	4	NaN	NaN	NaN	0.00095384	1	34907	58.508	45.826	1	34269			14452	3442	12162	12498	14452	14452		
MSAEDIEK	8	Unmodified	_MSAEDIEK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.71295	921.411348	0.13183	6.087E-05	1.1187	0.00051651	1.2505	0.00057738	461.713719381207	4.2904	0.1862	4.2904	4.2549	4.4411	0	741	37	0.827064408645228	0.0244942818992349	0.827064408645228	336.22439172407	0	9.95759815826005						292	22	4	NaN	NaN	NaN	0.029936	1	2719	30.593	13.197	1	69255			14453	3276	12163	12499	14453	14453		
MSASDPNSSIFLTDTAK	17	Unmodified	_MSASDPNSSIFLTDTAK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.922191	1783.82983	2.8353	0.0025317	-0.0089142	-7.9597E-06	2.8264	0.0025238	892.920848466289	11.004	0.21282	11.004	10.942	11.154	0	303	58	1.12200181823275	0.0379992536574683	1.12200181823275	452.870201332605	0	15.3375238566472						943	25	6	NaN	NaN	NaN	9.6067E-14	1	26785	129.04	122.3	1	346500			14454	818	12164	12500	14454	14454		
MSASDPNSSIFLTDTAK	17	Oxidation (M)	_M(Oxidation (M))SASDPNSSIFLTDTAK_	M(1)SASDPNSSIFLTDTAK	M(52)SASDPNSSIFLTDTAK	0	1	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.919649	1799.82474	2.0996	0.0018916	1.6937	0.0015259	3.7933	0.0034175	900.922309661398	9.9218	0.12415	9.9218	9.8598	9.9839	0	297	31	1.12600091227925	0.0199927208800443	1.12600091227925	454.453182323094	0	8.06904819361307						217	15	3	NaN	NaN	NaN	0.011601	1	27201	51.829	51.539	1	41936			14455	818	12164	12501	14455	14455	274	
MSATFIGNSTAIQELFK	17	Unmodified	_MSATFIGNSTAIQELFK_			0	0	0	P68371;Q9BVA1;Q13885	P68371;Q9BVA1	P68371	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.474394	1856.93424	0.9461	0.00087937	-6.9395	-0.0064501	-5.9934	-0.0055707	929.96955280641	18.825	0.14187	18.825	18.754	18.896	0	267	43	1.14597988355104	0.0279474898102239	1.14597988355104	462.407933508815	0	11.2769353069789						288	17	3	NaN	NaN	NaN	0.042996	1	28627	31.801	0	1	72376			14456	1449;2761	12165	12502	14456	14456		
MSATFIGNSTAIQELFK	17	Unmodified	_MSATFIGNSTAIQELFK_			0	0	0	P68371;Q9BVA1;Q13885	P68371;Q9BVA1	P68371	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.474394	1856.93424	1.3735	0.0012766	0.33381	0.00031027	1.7073	0.0015869	929.976262146643	18.195	0.39906	18.195	18.107	18.506	0	264	256	1.14797626962532	0.169205264962951	1.14797626962532	463.213459079563	0	68.27506643804						3509	46	7	NaN	NaN	NaN	3.6017E-34	1	28634	251.02	11.042	1	2320500			14457	1449;2761	12165	12502	14457	14457		
MSATFIGNSTAIQELFK	17	Oxidation (M)	_M(Oxidation (M))SATFIGNSTAIQELFK_	M(1)SATFIGNSTAIQELFK	M(160)SATFIGNSTAIQELFK	0	1	0	P68371;Q9BVA1;Q13885	P68371;Q9BVA1	P68371	TUBB4B;TUBB2B;TUBB2A	Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.471851	1872.92915	1.1389	0.0010676	0.91727	0.00085991	2.0561	0.0019276	937.472980253484	17.335	0.24827	17.335	17.202	17.45	0	216	67	1.17988115188462	0.0438451177464656	1.17988115188462	476.057068389319	0	17.6905768722781						1456	29	6	NaN	NaN	NaN	1.4175E-18	1	29004	155.57	20.439	1	634990			14458	1449;2761	12165	12503	14458	14458	522	
MSDAAGDIVDIREEIK	16	Unmodified	_MSDAAGDIVDIREEIK_			0	0	1	O94763	O94763	O94763	URI1	Unconventional prefoldin RPB5 interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.961098	1760.86146	-0.62781	-0.00036913	1.6007	0.00094114	0.97288	0.00057201	588.29663564453	11.731	0.044345	11.731	11.704	11.749	0	660	19	0.882057989648486	0.0121979015150934	0.882057989648486	534.084933248397	0	7.38581305641299						70	6	3	NaN	NaN	NaN	0.004729	1	26167	30.875	29.912	1	11762			14459	384	12166	12504	14459	14459		
MSDGLFLQK	9	Unmodified	_MSDGLFLQK_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.76806	1037.52157	0.7303	0.00037959	-0.5864	-0.00030479	0.1439	7.4795E-05	519.76737715253	9.6647	0.31919	9.6647	9.5494	9.8686	0	684	49	0.86578508874114	0.0325638877438675	0.86578508874114	351.386200485458	0	13.2163292440046						679	37	4	NaN	NaN	NaN	0.0025127	1	5180	82.716	71.888	1	252360			14460	1158	12167	12505	14460	14460		
MSDLTPVHFTPLDSSVDR	18	Unmodified	_MSDLTPVHFTPLDSSVDR_			0	0	0	Q9Y314	Q9Y314	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.99469	2015.96224	1.0444	0.0007029	-1.2994	-0.00087452	-0.255	-0.00017161	672.993795170191	12.937	0.10641	12.937	12.893	12.999	0	651	52	0.888155670855968	0.0345487443998951	0.888155670855968	537.245686110038	0	20.8985479667922						159	13	2	NaN	NaN	NaN	7.8597E-07	1	31908	73.305	71.717	1	83890			14461	3363	12168	12506	14461	14461		
MSEEDEQGWCQGQLQSGR	18	Unmodified	_MSEEDEQGWCQGQLQSGR_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1062.93911	2123.86367	1.3557	0.0014411	0.011853	1.2598E-05	1.3676	0.0014537	1063.44034169092	7.5624	0.070872	7.5624	7.527	7.5979	0	231	46	1.16991841121525	0.0299087706952383	1.16991841121525	471.62702371038	0	12.0570668609096						310	9	4	NaN	NaN	NaN	3.351E-10	1	33663	115.24	113.87	1	74157			14462	3268	12169	12507	14462	14462		
MSFYNELYK	9	Unmodified	_MSFYNELYK_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.778625	1193.5427	0.89929	0.00053758	1.3701	0.000819	2.2694	0.0013566	597.779114370219	11.305	0.12419	11.305	11.27	11.394	0	564	34	0.946969335010767	0.0222653859126632	0.946969335010767	383.676871237824	0	9.02110901381639						223	15	3	NaN	NaN	NaN	0.050117	1	9248	30.593	20.514	1	57383			14463	1979	12170	12508	14463	14463		
MSGGWELELNGTEAK	15	Unmodified	_MSGGWELELNGTEAK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.379962	1620.74537	1.9705	0.0015988	2.8264	0.0022933	4.7969	0.0038921	811.883937579881	12.13	0.25718	12.13	12.032	12.29	0	375	67	1.07392668217569	0.0441478922926009	1.07392668217569	433.802030709073	0	17.833103177264						1017	30	4	NaN	NaN	NaN	2.4835E-06	1	22207	119.43	113.4	1	251500			14464	1566	12171	12509	14464	14464		
MSGLIVGSAFGPIK	14	Unmodified	_MSGLIVGSAFGPIK_			0	0	0	Q9UKN8	Q9UKN8	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.883955	1375.75336	0.015665	1.0792E-05	1.4924	0.0010281	1.5081	0.0010389	688.884691124685	14.852	0.097515	14.852	14.808	14.905	0	468	37	1.01159370163332	0.0241772305983219	1.01159370163332	409.239301052193	0	9.78087638886996						233	12	3	NaN	NaN	NaN	0.0011902	1	14687	42.061	29.465	1	57958			14465	3267	12172	12510	14465	14465		
MSIHLIHMR	9	Unmodified	_MSIHLIHMR_			0	0	0	Q9Y241;A8MV81	Q9Y241	Q9Y241	HIGD1A;HIGD1C	HIG1 domain family member 1A, mitochondrial;HIG1 domain family member 1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	379.872173	1136.59469	-1.0962	-0.00041641	-1.1429	-0.00043414	-2.2391	-0.00085055	379.871913268726	7.3053	0.079813	7.3053	7.2787	7.3585	0	873	19	0.737001551771189	0.0123189795795753	0.737001551771189	448.160195436007	0	7.49099684076191						110	10	3	NaN	NaN	NaN	0.04318	1	7712	18.403	2.9043	1	25007			14466	3327	12173	12511	14466	14466		
MSINAEEVVVGDLVEVK	17	Unmodified	_MSINAEEVVVGDLVEVK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.988765	1829.94447	-0.72092	-0.00044048	0.39983	0.00024429	-0.32109	-0.00019618	611.323820711576	17.229	0.097563	17.229	17.184	17.282	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	553.595433947932	0	9.82302678071358						155	12	3	NaN	NaN	NaN	0.0093312	1	27979	65.173	62.871	1	29497			14467	522	12174	12512	14467	14467		
MSINAEEVVVGDLVEVK	17	Unmodified	_MSINAEEVVVGDLVEVK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.979509	1829.94447	1.0701	0.00098018	-0.076951	-7.0485E-05	0.99314	0.0009097	915.979676605307	17.22	0.24831	17.22	17.158	17.406	0	258	43	1.15196821829984	0.0279436470616286	1.15196821829984	464.875059408889	0	11.2766171683519						647	29	5	NaN	NaN	NaN	2.3496E-05	1	27982	93.026	89.941	1	165430			14468	522	12174	12512	14468	14468		
MSIYQAMWK	9	Unmodified	_MSIYQAMWK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.277738	1156.54092	0.79875	0.0004627	-2.4989	-0.0014476	-1.7002	-0.00098487	579.276447320864	12.928	0.1951	12.928	12.848	13.043	0	645	49	0.892219381832517	0.0325096976674552	0.892219381832517	361.626376134669	0	13.1765397570374						410	23	4	NaN	NaN	NaN	0.055218	1	8239	41.025	25.443	1	118460			14469	1298	12175	12513	14469	14469		
MSLFYAEATPMLK	13	Unmodified	_MSLFYAEATPMLK_			0	0	0	Q9NUQ9;Q9H0Q0	Q9NUQ9	Q9NUQ9	FAM49B;FAM49A	Protein FAM49B;Protein FAM49A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.375106	1500.73566	1.3493	0.0010138	2.6972	0.0020266	4.0464	0.0030404	751.376774260898	15.402	0.24839	15.402	15.296	15.544	0	414	70	1.04781950764076	0.0462023803621898	1.04781950764076	423.543000616127	0	18.675635137076						627	29	4	NaN	NaN	NaN	0.060335	1	18544	28.328	23.177	1	169890			14470	3057	12176	12514	14470	14470		
MSLPDVDLDLK	11	Unmodified	_MSLPDVDLDLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.323396	1244.63224	0.66979	0.0004175	2.2519	0.0014036	2.9217	0.0018211	623.323823121036	14.95	0.26602	14.95	14.905	15.171	-1.7764E-15	540	34	0.963152256458504	0.0222438199941358	0.963152256458504	390.050473427432	0	9.00814223438516						245	31	2	NaN	NaN	NaN	0.003349	1	10768	56.202	49.939	1	75702			14471	1584	12177	12515	14471	14471		
MSLQTDEDEHSIEMHLPYTAK	21	Unmodified	_MSLQTDEDEHSIEMHLPYTAK_			0	0	0	Q9Y316	Q9Y316	Q9Y316	MEMO1	Protein MEMO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	619.53462	2474.10938	0.71642	0.00044385	0.78875	0.00048866	1.5052	0.00093251	619.785556321827	11.314	0.15965	11.314	11.225	11.385	0	621	28	0.908462957275599	0.0182651557513902	0.908462957275599	731.776568492969	0	14.7127771052167						358	19	5	NaN	NaN	NaN	0.00043249	1	36698	26.55	22.392	1	78612			14472	3365	12178	12516	14472	14472		
MSNALAIQVDSEGK	14	Unmodified	_MSNALAIQVDSEGK_			0	0	0	Q13573	Q13573	Q13573	SNW1	SNW domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.863948	1461.71334	1.1285	0.00082592	-3.7087	-0.0027143	-2.5802	-0.0018884	731.861170951753	8.9287	0.1509	8.9287	8.8665	9.0174	0	501	34	0.98941132619024	0.0221854416206791	0.98941132619024	400.031184573392	0	8.96984727876224						269	18	3	NaN	NaN	NaN	0.023112	1	17318	54.199	49.953	1	58245			14473	1687	12180	12517	14473	14473		
MSNYDTDLFVPYFEAIQK	18	Unmodified	_MSNYDTDLFVPYFEAIQK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.678479	2180.01361	0.13677	9.9522E-05	-0.5923	-0.000431	-0.45553	-0.00033148	728.011996831587	18.967	0.07981	18.967	18.922	19.002	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	593.305568396096	0	10.9880016817688						202	10	5	NaN	NaN	NaN	0.026356	1	34449	55.782	45.761	1	43012			14474	1136	12181	12518	14474	14474		
MSNYDTDLFVPYFEAIQK	18	Unmodified	_MSNYDTDLFVPYFEAIQK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.01408	2180.01361	0.80739	0.00088088	0.93768	0.001023	1.7451	0.0019039	1091.5159605624	18.958	0.15962	18.958	18.905	19.064	0	126	61	1.23951419873743	0.0396736385378524	1.23951419873743	499.599416414647	0	15.9908831062575						980	19	6	NaN	NaN	NaN	6.8908E-14	1	34450	135.5	123.82	1	400650			14475	1136	12181	12518	14475	14475		
MSNYDTDLFVPYFEAIQK	18	Oxidation (M)	_M(Oxidation (M))SNYDTDLFVPYFEAIQK_	M(1)SNYDTDLFVPYFEAIQK	M(89)SNYDTDLFVPYFEAIQK	0	1	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1099.01154	2196.00852	0.57737	0.00063453	0.79682	0.00087572	1.3742	0.0015102	1099.51423228687	18.621	0.10641	18.621	18.568	18.674	0	120	49	1.2434810169581	0.0317302057438846	1.2434810169581	501.175169695023	0	12.7886079733255						496	13	5	NaN	NaN	NaN	1.0959E-06	1	34637	89.359	87.649	1	126170			14476	1136	12181	12519	14476	14476	411	
MSPLSIVTALVDK	13	Unmodified	_MSPLSIVTALVDK_			0	0	0	Q9Y305	Q9Y305	Q9Y305	ACOT9	Acyl-coenzyme A thioesterase 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.38907	1372.76359	0.10123	6.9587E-05	-0.93084	-0.00063985	-0.82961	-0.00057026	687.388605470632	19.951	0.10643	19.951	19.889	19.995	0	510	34	0.983355730988811	0.0222069226755673	0.983355730988811	397.824285490168	0	8.98398500963589						207	13	4	NaN	NaN	NaN	0.0040987	1	14595	44.82	36.818	1	56815			14477	3361	12182	12520	14477	14477		
MSPNETLFLESTNK	14	Unmodified	_MSPNETLFLESTNK_			0	0	0	Q9HB90;Q9NQL2	Q9HB90	Q9HB90	RRAGC;RRAGD	Ras-related GTP-binding protein C;Ras-related GTP-binding protein D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.890163	1609.76577	1.9028	0.0015335	-2.4511	-0.0019753	-0.5483	-0.00044187	805.887556318224	11.296	0.097534	11.296	11.234	11.332	0	411	19	1.04982941439551	0.0120586090769661	1.04982941439551	424.092707964559	0	4.87123727684951						83	12	2	NaN	NaN	NaN	0.016489	1	21883	43.613	41.629	1	15542			14478	2951	12183	12521	14478	14478		
MSQDSMMK	8	Unmodified	_MSQDSMMK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.195556	956.376559	0.29055	0.00013923	-0.3687	-0.00017668	-0.078148	-3.7448E-05	479.19581837803	3.2971	0.17732	3.2971	3.2617	3.439	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	335.214586335911	0	6.63390939793049						235	21	3	NaN	NaN	NaN	0.054243	1	3354	30.593	26.777	1	43267			14479	1489	12184	12522	14479	14479		
MSQEEVNVFR	10	Unmodified	_MSQEEVNVFR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.795337	1237.57612	1.5673	0.00097142	-1.2534	-0.00077684	0.31394	0.00019458	619.792263672634	8.1213	0.2396	8.1213	8.0325	8.2721	0	567	46	0.944945209309785	0.0303660983099298	0.944945209309785	382.701064989999	0	12.298213746477						487	28	4	NaN	NaN	NaN	4.9446E-05	1	10544	98.009	80.613	1	121740			14480	2110	12185	12523	14480	14480		
MSQVAPSLSALIGEAVGAR	19	Unmodified	_MSQVAPSLSALIGEAVGAR_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.998568	1855.98258	0.94539	0.00087827	-0.074307	-6.9031E-05	0.87109	0.00080924	929.500126122212	19.029	0.10641	19.029	18.993	19.1	0	231	109	1.16991841121525	0.0718749506436613	1.16991841121525	472.069005636828	0	29.0019681332345						469	13	4	NaN	NaN	NaN	0.0020135	1	28612	65.421	64.052	1	124320			14481	92	12186	12524	14481	14481		
MSSEVVDSNPYSR	13	Unmodified	_MSSEVVDSNPYSR_			0	0	0	Q9GZZ9	Q9GZZ9	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.830105	1469.64566	1.5109	0.0011117	0.84851	0.00062436	2.3594	0.0017361	735.830789238825	6.2589	0.13304	6.2589	6.2057	6.3387	0	456	28	1.01965166402748	0.0181241570782431	1.01965166402748	412.236843160642	0	7.32744873810276						214	16	3	NaN	NaN	NaN	0.0044609	1	17562	61.577	51.327	1	63362			14482	2837	12187	12525	14482	14482		
MSSFGDFVALSDVCDVPTAK	20	Unmodified	_MSSFGDFVALSDVCDVPTAK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.4952	2144.97584	0.44933	0.00048236	-0.50147	-0.00053832	-0.052131	-5.5963E-05	1073.99707123959	16.972	0.19511	16.972	16.91	17.105	0	102	82	1.25537494996371	0.0535410826740943	1.25537494996371	506.044597473222	0	21.5825364612188						1468	23	6	NaN	NaN	NaN	4.7995E-22	1	33951	150.93	132.4	1	657400			14483	929	12188	12526	14483	14483		
MSSTIFSTGGK	11	Unmodified	_MSSTIFSTGGK_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.273706	1114.53286	0.71087	0.00039686	-0.22903	-0.00012786	0.48184	0.000269	558.273652959585	7.3053	0.2128	7.3053	7.261	7.4738	0	672	40	0.873923798053065	0.0264416320907981	0.873923798053065	354.368240913401	0	10.7218440232091						329	25	2	NaN	NaN	NaN	0.004415	1	7106	44.57	35.177	1	114610			14484	1638	12189	12527	14484	14484		
MSTEEIIQR	9	Unmodified	_MSTEEIIQR_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.779156	1105.54376	0.96576	0.00053482	1.995	0.0011048	2.9608	0.0016396	553.78056404411	6.658	0.26601	6.658	6.5515	6.8175	0	639	40	0.896281965493857	0.0264049676271125	0.896281965493857	363.47036210376	0	10.7080400077853						536	31	4	NaN	NaN	NaN	0.0573	1	6859	43.734	14.633	1	285140			14485	746	12190	12528	14485	14485		
MSTSPEAFLALR	12	Unmodified	_MSTSPEAFLALR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.842287	1321.67002	1.0641	0.00070424	-1.485	-0.0009828	-0.42089	-0.00027856	661.841370068918	14.214	0.21282	14.214	14.134	14.347	0	522	52	0.975277694896658	0.0343482903066424	0.975277694896658	394.708292067587	0	13.9012253364546						613	25	5	NaN	NaN	NaN	4.7008E-05	1	13034	81.099	58.046	1	271300			14486	1465	12191	12529	14486	14486		
MSVDAVEIETLRK	13	Unmodified	_MSVDAVEIETLRK_			0	0	1	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.600953	1489.78103	-0.59292	-0.00029504	-2.0714	-0.0010308	-2.6644	-0.0013258	497.599825053827	9.9573	0.10638	9.9573	9.9218	10.028	0	720	28	0.841341816837976	0.0183490160938558	0.841341816837976	510.15395847771	0	11.1260643499601						177	13	2	NaN	NaN	NaN	0.024421	1	18226	33.1	25.543	1	79304			14487	1459	12192	12530	14487	14487		
MSVFQTQLPTLGVGALK	17	Unmodified	_MSVFQTQLPTLGVGALK_			0	0	0	O95486	O95486	O95486	SEC24A	Protein transport protein Sec24A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.497672	1788.98079	0.87457	0.00078317	1.0474	0.00093791	1.9219	0.0017211	896.000113509107	17.317	0.097534	17.317	17.264	17.362	0	213	58	1.18187287897418	0.0378636312873253	1.18187287897418	477.025178126276	0	15.2824434680496						464	12	3	NaN	NaN	NaN	2.1719E-15	1	26953	163.93	135.29	1	125090			14488	439	12193	12531	14488	14488		
MSVQPTVSLGGFEITPPVVLR	21	Unmodified	_MSVQPTVSLGGFEITPPVVLR_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.076685	2226.20823	0.46345	0.00034438	-0.33121	-0.00024611	0.13224	9.8266E-05	743.410813487289	19.162	0.19506	19.162	19.055	19.25	0	432	106	1.035754240522	0.0704537337753034	1.035754240522	626.123653166224	0	42.5899768929372						2036	23	6	NaN	NaN	NaN	2.1003E-07	1	34954	144.16	144.08	1	697100			14489	547	12194	12532	14489	14489		
MSVQPTVSLGGFEITPPVVLR	21	Unmodified	_MSVQPTVSLGGFEITPPVVLR_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1114.11139	2226.20823	0.81319	0.00090599	0.73461	0.00081844	1.5478	0.0017244	1114.61394529977	19.162	0.53203	19.162	18.967	19.499	0	90	214	1.26329880838669	0.14104512373387	1.26329880838669	509.1191504336	0	56.842271275387						4487	61	7	NaN	NaN	NaN	1.9358E-47	1	34955	184.31	169.29	1	5611200			14490	547	12194	12532	14490	14490		
MSVQPTVSLGGFEITPPVVLR	21	Oxidation (M)	_M(Oxidation (M))SVQPTVSLGGFEITPPVVLR_	M(1)SVQPTVSLGGFEITPPVVLR	M(63)SVQPTVSLGGFEITPPVVLR	0	1	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.408323	2242.20314	0.82282	0.00061581	-1.11	-0.00083073	-0.28718	-0.00021492	748.74166624914	18.727	0.17733	18.727	18.621	18.798	0	423	109	1.04178812298108	0.0724416933118124	1.04178812298108	629.743357462833	0	43.7897823560638						616	21	2	NaN	NaN	NaN	0.031439	1	35124	63.025	58.192	1	330410			14491	547	12194	12533	14491	14491	125	
MSVQPTVSLGGFEITPPVVLR	21	Oxidation (M)	_M(Oxidation (M))SVQPTVSLGGFEITPPVVLR_	M(1)SVQPTVSLGGFEITPPVVLR	M(170)SVQPTVSLGGFEITPPVVLR	0	1	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.10885	2242.20314	1.1505	0.001291	0.31663	0.00035529	1.4672	0.0016463	1122.61092231686	18.736	0.30148	18.736	18.568	18.869	0	87	91	1.26527909472281	0.0594289997864927	1.26527909472281	509.894660415446	0	23.9492850165218						2595	35	6	NaN	NaN	NaN	1.0202E-22	1	35125	168.74	165.66	1	1612700			14492	547	12194	12533	14492	14492	125	
MSYLELMEHPFFTLHK	16	Unmodified	_MSYLELMEHPFFTLHK_			0	0	0	P46734	P46734	P46734	MAP2K3	Dual specificity mitogen-activated protein kinase kinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.998718	2021.97433	-0.41738	-0.00028173	0.0095315	6.4337E-06	-0.40785	-0.0002753	675.332641181389	17.388	0.079822	17.388	17.353	17.433	0	603	22	0.920633820089869	0.0141944207177085	0.920633820089869	556.880411887027	0	8.58603571070603						124	10	4	NaN	NaN	NaN	0.001523	1	32018	39.702	33.8	1	22529			14493	1083	12195	12534	14493	14493		
MTAEEMASDELK	12	Unmodified	_MTAEEMASDELK_			0	0	0	P23193	P23193	P23193	TCEA1	Transcription elongation factor A protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.796885	1353.57922	1.1629	0.0007882	0.88321	0.00059864	2.0461	0.0013868	677.79784794712	9.2391	0.17739	9.2391	9.1947	9.3721	0	510	46	0.983355730988811	0.0302779838228682	0.983355730988811	397.880489231224	0	12.2509267366185						596	21	4	NaN	NaN	NaN	3.3981E-05	1	13995	113.46	102.1	1	191660			14494	813	12196	12535	14494	14494		
MTALAQDFAVGLGPR	15	Unmodified	_MTALAQDFAVGLGPR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.90595	1545.79735	1.5627	0.0012094	2.2863	0.0017694	3.849	0.0029788	773.908810400033	14.666	0.20397	14.666	14.568	14.772	0	408	37	1.0518390438467	0.0241072414200156	1.0518390438467	425.054478789169	0	9.7418811335956						450	24	3	NaN	NaN	NaN	3.5197E-06	1	19920	106.11	92.314	1	198620			14495	1163	12197	12536	14495	14495		
MTANSVLEPGNSEVSLVCEK	20	Unmodified	_MTANSVLEPGNSEVSLVCEK_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.51666	2163.01877	1.3509	0.0014624	-1.3991	-0.0015145	-0.048191	-5.2168E-05	1083.01784572487	12.245	0.15078	12.245	12.157	12.307	0	156	43	1.21966378336455	0.0278020206625824	1.21966378336455	491.622958242684	0	11.2064585582416						492	18	4	NaN	NaN	NaN	3.2169E-07	1	34216	65.421	55.842	1	88085			14496	621	12198	12537	14496	14496		
MTATGSGENSTVAEHLIAQHSAIK	24	Unmodified	_MTATGSGENSTVAEHLIAQHSAIK_			0	0	0	Q7L5N1	Q7L5N1	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	614.057686	2452.20164	0.50899	0.00031255	0.88662	0.00054443	1.3956	0.00085698	614.309280995401	8.7068	0.10661	8.7068	8.68	8.7866	0	630	25	0.902373728295776	0.0162413229222488	0.902373728295776	726.907862348639	0	13.0832103782793						286	13	6	NaN	NaN	NaN	1.3543E-06	1	36587	60.14	59.442	1	90992			14497	2120	12199	12538	14497	14497		
MTDFDRFK	8	Unmodified	_MTDFDRFK_			0	0	1	P50914	P50914	P50914	RPL14	60S ribosomal protein L14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	353.835782	1058.48552	-1.3224	-0.00046792	0.034439	1.2186E-05	-1.288	-0.00045573	353.835841206818	6.1791	0.044316	6.1791	6.1525	6.1968	0	909	16	0.712342960434231	0.0102823001644037	0.712342960434231	433.547833146349	0	6.25803749547856						30	6	2	NaN	NaN	NaN	0.047593	1	5676	40.203	32.02	1	5107.7			14498	1173	12200	12539	14498	14498		
MTDQEAIQDLWQWR	14	Unmodified	_MTDQEAIQDLWQWR_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.285916	1818.83592	-0.33502	-0.00020345	-0.53634	-0.00032571	-0.87136	-0.00052916	607.619874577212	17.77	0.12413	17.77	17.725	17.849	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	531.490410685213	0	13.5419880941545						420	15	5	NaN	NaN	NaN	0.00016762	1	27677	81.335	72.179	1	171900			14499	547	12201	12540	14499	14499		
MTDQEAIQDLWQWR	14	Unmodified	_MTDQEAIQDLWQWR_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.425236	1818.83592	2.3477	0.0021374	1.0516	0.00095738	3.3993	0.0030948	910.426529643547	17.779	0.34578	17.779	17.69	18.036	0	315	154	1.11400032671325	0.10218102156007	1.11400032671325	449.573822457123	0	41.2368931532272						2405	40	7	NaN	NaN	NaN	8.9155E-44	1	27683	260.76	224.25	1	4990500			14500	547	12201	12540	14500	14500		
MTDQEAIQDLWQWR	14	Oxidation (M)	_M(Oxidation (M))TDQEAIQDLWQWR_	M(1)TDQEAIQDLWQWR	M(240)TDQEAIQDLWQWR	0	1	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.422693	1834.83083	1.9279	0.0017706	-1.2895	-0.0011843	0.63842	0.00058634	918.923339176698	16.59	0.2483	16.59	16.528	16.777	0	303	67	1.12200181823275	0.0439961143381138	1.12200181823275	452.773096789816	0	17.7542109218351						1071	29	5	NaN	NaN	NaN	5.6643E-24	1	28093	236.7	216.36	1	788030			14501	547	12201	12541	14501	14501	126	
MTDVFEGSIIR	11	Unmodified	_MTDVFEGSIIR_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.321188	1266.62782	1.3012	0.0008254	-2.6352	-0.0016716	-1.334	-0.0008462	634.319436125654	12.715	0.30151	12.715	12.573	12.875	0	576	61	0.938871150116794	0.0404741262657745	0.938871150116794	380.144860433456	0	16.3877983454438						468	35	2	NaN	NaN	NaN	0.00036518	1	11409	94.804	84.102	1	174390			14502	1047	12202	12542	14502	14502		
MTEIQTPENTPR	12	Unmodified	_MTEIQTPENTPR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.843016	1415.67148	2.038	0.0014446	-1.1559	-0.00081938	0.88209	0.00062526	708.842735202063	5.8066	0.20393	5.8066	5.7002	5.9041	0	510	49	0.983355730988811	0.0322942844341361	0.983355730988811	397.704044101101	0	13.0609576128593						446	24	3	NaN	NaN	NaN	4.7008E-05	1	15955	64.064	55.087	1	122680			14503	3042	12203	12543	14503	14503		
MTESWFSSLSR	11	Unmodified	_MTESWFSSLSR_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.808445	1329.60234	0.99488	0.0006624	0.9854	0.00065609	1.9803	0.0013185	665.810380115953	13.496	0.12413	13.496	13.442	13.567	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	392.230911889555	0	6.54270501392023						203	15	4	NaN	NaN	NaN	0.0069317	1	13266	48.785	38.083	1	41865			14504	1881	12204	12544	14504	14504		
MTEWETAAPAVAETPDIK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MTEWETAAPAVAETPDIK_			1	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.47733	2000.94011	0.018889	1.8917E-05	0.74776	0.00074886	0.76665	0.00076778	1001.97971620088	16.865	0.12418	16.865	16.812	16.936	0	75	136	1.27319752866042	0.0892352735645912	1.27319752866042	513.466537984598	0	35.987602828233						1422	15	4	NaN	NaN	NaN	3.7639E-07	1	31650	97.084	88.709	1	367870			14505	1090	12205	12545	14505	14505		
MTGESECLNPSTQSR	15	Unmodified	_MTGESECLNPSTQSR_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.866893	1695.71923	2.6628	0.0022604	0.62458	0.00053019	3.2874	0.0027906	849.872339620501	4.7248	0.15961	4.7248	4.645	4.8046	0	408	64	1.0518390438467	0.0421789590923636	1.0518390438467	424.720722151051	0	17.0313871405397						605	19	4	NaN	NaN	NaN	7.1764E-05	1	24357	110.91	105.75	1	120790			14506	2866	12206	12546	14506	14506		
MTGLVDEAIDTK	12	Unmodified	_MTGLVDEAIDTK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.82376	1291.63297	2.326	0.0015045	-0.20428	-0.00013214	2.1217	0.0013724	646.823806524704	9.78	0.14188	9.78	9.7002	9.842	0	525	40	0.973257487423603	0.0262627024268471	0.973257487423603	393.985440237795	0	10.6314336248944						468	17	5	NaN	NaN	NaN	1.8595E-07	1	12126	115.41	97.942	1	289730			14507	753	12207	12547	14507	14507		
MTGSEFDFEEMK	12	Unmodified	_MTGSEFDFEEMK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.796885	1449.57922	1.0876	0.00078939	-0.16451	-0.0001194	0.92311	0.00066999	725.79702866046	11.766	0.19508	11.766	11.722	11.917	0	456	49	1.01965166402748	0.0322229556332772	1.01965166402748	412.290068076721	0	13.0291598987858						714	23	5	NaN	NaN	NaN	2.8653E-07	1	16956	116.13	112.52	1	355730			14508	1161	12208	12548	14508	14508		
MTGSEFDFEEMK	12	Oxidation (M)	_MTGSEFDFEEM(Oxidation (M))K_	MTGSEFDFEEM(1)K	M(-45)TGSEFDFEEM(45)K	0	1	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.794343	1465.57413	1.1808	0.00086646	1.1171	0.00081976	2.2979	0.0016862	733.794977345052	9.1858	0.15072	9.1858	9.1504	9.3011	0	489	31	0.997481546940468	0.0201727650206149	0.997481546940468	403.28409407297	0	8.15589550627664						324	18	4	NaN	NaN	NaN	0.014818	1	17431	44.598	41.495	2	76671			14509	1161	12208	12549	14509	14509	420	
MTHNLLLNYGLYR	13	Unmodified	_MTHNLLLNYGLYR_			0	0	0	Q13547;Q92769	Q13547;Q92769	Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.616937	1606.82898	-0.95074	-0.00051018	-0.98996	-0.00053123	-1.9407	-0.0010414	536.616560804125	12.139	0.13303	12.139	12.094	12.227	1.7764E-15	735	31	0.831145085810763	0.0204033881937532	0.831145085810763	503.633499267279	0	12.3634609268065						343	16	4	NaN	NaN	NaN	0.002359	1	21829	66.664	60.798	1	110240			14510	2431;1682	12209	12550	14510	14510		
MTHNLLLNYGLYR	13	Unmodified	_MTHNLLLNYGLYR_			0	0	0	Q13547;Q92769	Q13547;Q92769	Q92769	HDAC1;HDAC2	Histone deacetylase 1;Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.421768	1606.82898	2.0486	0.0016479	0.95773	0.00077042	3.0063	0.0024183	804.422775362981	12.139	0.10643	12.139	12.103	12.21	0	345	37	1.09397730668811	0.024044179420704	1.09397730668811	441.933720327118	0	9.71312073718718						348	13	4	NaN	NaN	NaN	3.1338E-05	1	21830	54.27	48.404	1	87000			14511	2431;1682	12209	12550	14511	14511		
MTIGHLIECLQGK	13	Unmodified	_MTIGHLIECLQGK_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.595145	1498.7636	-1.7497	-0.00087588	-0.77493	-0.00038793	-2.5246	-0.0012638	500.594953186779	14.533	0.097517	14.533	14.489	14.586	0	807	31	0.782101955086014	0.0204659356679318	0.782101955086014	474.207290669133	0	12.4089907217165						285	12	4	NaN	NaN	NaN	0.002584	1	18496	74.849	64.598	1	71518			14512	918	12210	12551	14512	14512		
MTIGHLIECLQGK	13	Unmodified	_MTIGHLIECLQGK_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.389079	1498.7636	1.516	0.0011376	0.94476	0.00070894	2.4607	0.0018465	750.390072629806	14.524	0.088662	14.524	14.489	14.577	0	369	31	1.07793901817685	0.0200589169906749	1.07793901817685	435.722965217595	0	8.10818668111011						232	11	4	NaN	NaN	NaN	0.00052755	1	18499	75.474	64.687	1	55492			14513	918	12210	12551	14513	14513		
MTISQQEFGR	10	Unmodified	_MTISQQEFGR_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.790055	1195.56556	0.94763	0.00056743	-1.212	-0.00072572	-0.26435	-0.00015829	598.789569624083	7.2432	0.21279	7.2432	7.19	7.4028	0	618	52	0.910492137470517	0.0344817318374574	0.910492137470517	368.890540767286	0	13.970449804707						586	25	4	NaN	NaN	NaN	3.9884E-14	1	9305	179.36	127.93	1	189870			14514	1262	12211	12552	14514	14514		
MTITEFMNHPWIMQSTK	17	Unmodified	_MTITEFMNHPWIMQSTK_			0	0	0	P49137	P49137	P49137	MAPKAPK2	MAP kinase-activated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.998501	2093.97367	-0.60973	-0.0004262	2.491	0.0017412	1.8812	0.001315	699.334709219753	16.777	0.09753	16.777	16.723	16.821	0	522	19	0.975277694896658	0.0121187305342272	0.975277694896658	589.795623028399	0	7.32875801748457						134	12	4	NaN	NaN	NaN	0.022513	1	33238	55.782	51.71	1	24420			14515	1122	12212	12553	14515	14515		
MTLADIER	8	Unmodified	_MTLADIER_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.744585	947.474617	0.079843	3.7905E-05	-0.2416	-0.0001147	-0.16176	-7.6795E-05	474.744564890818	9.1947	0.10641	9.1947	9.1504	9.2568	0	687	37	0.863749705078866	0.0244296961484468	0.863749705078866	350.996053936308	0	9.92732836439569						254	13	3	NaN	NaN	NaN	0.0031132	1	3196	72.492	54.798	1	81564			14516	3248	12213	12554	14516	14516		
MTLDTLSIYETPSMGLLDK	19	Unmodified	_MTLDTLSIYETPSMGLLDK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.53125	2127.04794	0.5977	0.00063627	-0.49968	-0.00053192	0.098018	0.00010434	1065.03258743124	18.302	0.17733	18.302	18.248	18.426	0	114	103	1.24744674793813	0.067408279113494	1.24744674793813	502.875987894077	0	27.1739094333822						1054	21	5	NaN	NaN	NaN	7.0564E-07	1	33706	81.908	75.803	1	301240			14517	1280	12214	12555	14517	14517		
MTLDTLSIYETPSMGLLDK	19	Oxidation (M)	_MTLDTLSIYETPSM(Oxidation (M))GLLDK_	MTLDTLSIYETPSM(1)GLLDK	M(-120)TLDTLSIYETPSM(120)GLLDK	0	1	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.52871	2143.04286	0.91027	0.0009763	0.323	0.00034643	1.2333	0.0013227	1073.03080268601	16.59	0.10641	16.59	16.546	16.652	0	123	46	1.24149774378079	0.0297572623085223	1.24149774378079	500.453564525462	0	11.9952920312746						407	13	4	NaN	NaN	NaN	1.8486E-06	1	33923	124.24	118.62	2	75326			14518	1280	12214	12556	14518	14518	454	
MTLSNPSELDELMSEEAYEK	20	Unmodified	_MTLSNPSELDELMSEEAYEK_			0	0	0	P23434	P23434	P23434	GCSH	Glycine cleavage system H protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1158.51652	2315.01849	0.28579	0.0003311	0.75753	0.00087761	1.0433	0.0012087	1159.01915452562	15.881	0.20394	15.881	15.837	16.041	0	69	106	1.27715511956461	0.0693481083373293	1.27715511956461	514.580863330952	0	27.9411708976717						1791	24	8	NaN	NaN	NaN	4.5364E-37	1	35771	216.38	208.01	1	817120			14519	820	12215	12557	14519	14519		
MTLSNPSELDELMSEEAYEK	20	Oxidation (M)	_MTLSNPSELDELM(Oxidation (M))SEEAYEK_	MTLSNPSELDELM(1)SEEAYEK	M(-88)TLSNPSELDELM(88)SEEAYEK	0	1	0	P23434	P23434	P23434	GCSH	Glycine cleavage system H protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1166.51398	2331.01341	1.4263	0.0016637	-0.33872	-0.00039512	1.0875	0.0012686	1167.01509262505	12.99	0.070948	12.99	12.955	13.026	0	90	67	1.26329880838669	0.0435812452471609	1.26329880838669	508.977151897951	0	17.5586788610951						508	9	4	NaN	NaN	NaN	7.3572E-08	1	35902	94.119	92.271	2	114850			14520	820	12215	12558	14520	14520	276	
MTLVEEGFNPAVIK	14	Unmodified	_MTLVEEGFNPAVIK_			0	0	0	O14975	O14975	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.410534	1546.80652	1.3438	0.0010406	3.0805	0.0023856	4.4243	0.0034262	774.409984610294	14.107	0.11526	14.107	14.072	14.187	0	387	34	1.06589869032374	0.0220845924039434	1.06589869032374	430.733568782657	0	8.92446476162928						220	14	3	NaN	NaN	NaN	0.0014472	1	19954	61.577	56.749	1	66964			14521	132	12216	12559	14521	14521		
MTNHCVFSANEDHETIR	17	Unmodified	_MTNHCVFSANEDHETIR_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.635279	2059.88401	2.4049	0.0016537	-1.8679	-0.0012844	0.537	0.00036926	687.968150232706	5.1327	0.088678	5.1327	5.1061	5.1947	0	534	28	0.967195187796614	0.0181894169559895	0.967195187796614	584.971479577787	0	11.0011818541429						137	11	2	NaN	NaN	NaN	0.0011239	1	32695	66.66	62.924	1	78697			14522	3463	12217	12560	14522	14522		
MTNPAIQNDFSYYR	14	Unmodified	_MTNPAIQNDFSYYR_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.393404	1718.77226	3.2677	0.0028115	0.51979	0.00044722	3.7874	0.0032587	860.393267432575	11.048	0.20394	11.048	10.986	11.19	0	327	70	1.10599442759226	0.0460561408828231	1.10599442759226	446.539493376624	0	18.5949271566133						712	24	4	NaN	NaN	NaN	8.1732E-08	1	25020	99.589	94.495	1	282060			14523	3057	12218	12561	14523	14523		
MTNYDVEHTIK	11	Unmodified	_MTNYDVEHTIK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	450.88346	1349.62855	-0.39762	-0.00017928	-1.6035	-0.00072301	-2.0012	-0.00090229	450.882655368839	5.5583	0.11526	5.5583	5.5228	5.6381	0	813	28	0.778007628350577	0.0184257549517962	0.778007628350577	472.200760290814	0	11.1832521688975						226	14	4	NaN	NaN	NaN	0.0042663	1	13874	60.892	57.284	1	86280			14524	573	12219	12562	14524	14524		
MTNYDVEHTIK	11	Unmodified	_MTNYDVEHTIK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.821552	1349.62855	2.3432	0.0015836	-1.2156	-0.00082152	1.1276	0.00076206	675.820812033621	5.5583	0.17741	5.5583	5.5228	5.7002	0	456	46	1.01965166402748	0.030215279505817	1.01965166402748	412.578584608322	0	12.2259176264325						375	21	5	NaN	NaN	NaN	4.8241E-05	1	13875	90.263	70.029	1	166290			14525	573	12219	12562	14525	14525		
MTTETASEDDNFGTAQSNK	19	Unmodified	_MTTETASEDDNFGTAQSNK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.93147	2045.84839	2.4282	0.0024864	-1.7032	-0.001744	0.72503	0.00074239	1024.43159406224	5.381	0.088662	5.381	5.3544	5.443	0	270	73	1.14398322290989	0.0478902453991759	1.14398322290989	461.286060167812	0	19.3106875854905						361	11	4	NaN	NaN	NaN	1.3609E-20	1	32452	155.34	141.56	1	74277			14526	2420	12220	12563	14526	14526		
MTVAHMWFDNQIHEADTTENQSGVSFDK	28	Unmodified	_MTVAHMWFDNQIHEADTTENQSGVSFDK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	810.360567	3237.41316	1.4484	0.0011737	0.45779	0.00037098	1.9062	0.0015447	810.612012822285	12.999	0.079798	12.999	12.972	13.052	0	456	25	1.01965166402748	0.0161136996889994	1.01965166402748	820.258580780385	0	12.9626625487113						198	10	5	NaN	NaN	NaN	0.0005162	1	38493	43.727	41.098	1	37314			14527	522	12221	12564	14527	14527		
MTVCLETEK	9	Unmodified	_MTVCLETEK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.762117	1109.50968	0.78258	0.00043493	1.896	0.0010537	2.6786	0.0014887	555.763012011793	6.5781	0.20396	6.5781	6.5338	6.7377	0	642	31	0.894250814548268	0.020312920651839	0.894250814548268	362.630707102533	0	8.2371619454604						252	24	2	NaN	NaN	NaN	0.013139	1	6970	49.96	39.881	1	119600			14528	1228	12222	12565	14528	14528		
MTVDESGQLISCSMDDTVR	19	Unmodified	_MTVDESGQLISCSMDDTVR_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.46885	2142.92315	2.2996	0.0024662	-0.62578	-0.00067113	1.6738	0.0017951	1072.97016849101	12.777	0.13301	12.777	12.742	12.875	0	153	55	1.22165005014568	0.0357601730343255	1.22165005014568	492.453046267262	0	14.4150987786544						515	16	5	NaN	NaN	NaN	2.2757E-07	1	33918	109.47	106.03	1	112810			14529	300	12223	12566	14529	14529		
MVADLVENSYSISVPIFK	18	Unmodified	_MVADLVENSYSISVPIFK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.52408	2011.03361	1.3774	0.0013864	-1.9688	-0.0019816	-0.59139	-0.00059525	1007.02447396486	18.346	0.16846	18.346	18.284	18.452	0	177	43	1.2057522832638	0.027844013131697	1.2057522832638	486.249807336864	0	11.2287956727929						494	20	5	NaN	NaN	NaN	6.2167E-05	1	31824	103.23	98.397	1	120160			14530	1498	12224	12567	14530	14530		
MVAYLQDSALDDER	14	Unmodified	_MVAYLQDSALDDER_			0	0	0	Q6Y7W6	Q6Y7W6	Q6Y7W6	GIGYF2	PERQ amino acid-rich with GYF domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.37742	1624.74029	2.648	0.0021538	0.53225	0.00043292	3.1802	0.0025867	813.378266066678	10.835	0.12414	10.835	10.782	10.906	0	363	49	1.08195024817156	0.0320898495597994	1.08195024817156	437.033972385616	0	12.9621065756734						382	15	3	NaN	NaN	NaN	0.0032595	1	22322	58.476	53.948	1	95488			14531	2094	12225	12568	14531	14531		
MVDAFLGTWK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MVDAFLGTWK_			1	0	0	P05413	P05413	P05413	FABP3	Fatty acid-binding protein, heart	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.302267	1208.58998	-0.44332	-0.00026834	-1.3708	-0.00082977	-1.8142	-0.0010981	605.301010972265	20.111	0.017727	20.111	20.102	20.119	0	576	19	0.938871150116794	0.0121523258249554	0.938871150116794	380.341669871097	0	4.92297148176959						28	3	2	NaN	NaN	NaN	0.0067198	1	9694	63.397	59.789	1	5913.3			14532	531	12226	12569	14532	14532		
MVDENCVGFDHTVK	14	Unmodified	_MVDENCVGFDHTVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.913202	1649.71778	-0.65724	-0.00036208	1.636	0.0009013	0.97877	0.00053922	550.914328803337	6.5693	0.088674	6.5693	6.5338	6.6225	0	750	52	0.820941264895493	0.0346930021779448	0.820941264895493	497.340062374059	0	21.0176057714908						353	11	5	NaN	NaN	NaN	0.00016842	1	23014	90.689	86.161	1	96862			14533	867	12227	12570	14533	14533		
MVDENCVGFDHTVK	14	Unmodified	_MVDENCVGFDHTVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.866165	1649.71778	2.5624	0.0021162	-1.364	-0.0011265	1.1984	0.00098973	825.866095079369	6.5693	0.15961	6.5693	6.5161	6.6757	0	378	70	1.07192009927972	0.0461514355558554	1.07192009927972	432.927059425903	0	18.6396404889751						568	19	5	NaN	NaN	NaN	3.1248E-06	1	23015	88.42	79.158	1	152670			14534	867	12227	12570	14534	14534		
MVDVVEK	7	Unmodified	_MVDVVEK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	410.217672	818.42079	-0.37701	-0.00015466	1.1044	0.00045303	0.72734	0.00029837	410.218310568874	4.3701	0.10641	4.3701	4.3347	4.4411	0	747	28	0.822982596624503	0.0183694328474171	0.822982596624503	335.182736669545	0	7.48146655605888						183	13	3	NaN	NaN	NaN	0.020665	1	1185	44.767	29.268	1	46302			14535	952	12228	12571	14535	14535		
MVEEVFSNAIDCLSDEDK	18	Unmodified	_MVEEVFSNAIDCLSDEDK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.95864	2099.90274	1.8909	0.0019873	-0.29095	-0.00030577	1.6	0.0016815	1051.46020253084	16.466	0.14192	16.466	16.413	16.555	0	156	43	1.21966378336455	0.0278134637281793	1.21966378336455	491.717231089636	0	11.2132208547711						525	17	5	NaN	NaN	NaN	2.4274E-05	1	33306	87.251	85.15	1	212660			14536	1047	12229	12572	14536	14536		
MVEGFFDR	8	Unmodified	_MVEGFFDR_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.731477	999.448402	-0.31456	-0.00015751	-0.24496	-0.00012266	-0.55952	-0.00028017	500.731384915233	10.312	0.20393	10.312	10.25	10.454	0	714	49	0.845418525735192	0.0326091497098583	0.845418525735192	343.291365012115	0	13.2412990430353						502	24	4	NaN	NaN	NaN	0.0029631	1	4267	75.243	72.103	1	182830			14537	472	12230	12573	14537	14537		
MVEGYQGLR	9	Unmodified	_MVEGYQGLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.763309	1051.51206	1.1388	0.00059989	0.68888	0.00036287	1.8277	0.00096277	526.763219816092	6.0372	0.21288	6.0372	5.9396	6.1525	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	352.150784573547	0	9.08401078312551						463	25	4	NaN	NaN	NaN	0.0028522	1	5504	58.286	46.219	1	194730			14538	1816	12231	12574	14538	14538		
MVEHILNTEENWNSWK	16	Unmodified	_MVEHILNTEENWNSWK_			0	0	0	Q96FV9	Q96FV9	Q96FV9	THOC1	THO complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.319397	2028.93636	0.32802	0.00022218	0.5837	0.00039535	0.91172	0.00061753	677.320073042253	12.192	0.053215	12.192	12.165	12.219	0	552	34	0.955063035883597	0.0222530586923161	0.955063035883597	577.6927269266	0	13.4602949495667						121	7	3	NaN	NaN	NaN	0.056466	1	32130	23.149	22.054	1	21829			14539	2528	12232	12575	14539	14539		
MVEINFLCVHK	11	Unmodified	_MVEINFLCVHK_			0	0	0	P30419;O60551	P30419	P30419	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.905431	1388.69446	-1.6792	-0.00077897	-1.5254	-0.00070765	-3.2046	-0.0014866	463.904830200439	12.733	0.18623	12.733	12.644	12.83	0	801	31	0.78619514174348	0.0204630863651483	0.78619514174348	477.034152166231	0	12.4162444367888						351	22	4	NaN	NaN	NaN	0.019355	1	15100	54.436	45.963	1	128200			14540	909	12233	12576	14540	14540		
MVEINFLCVHK	11	Unmodified	_MVEINFLCVHK_			0	0	0	P30419;O60551	P30419	P30419	NMT1;NMT2	Glycylpeptide N-tetradecanoyltransferase 1;Glycylpeptide N-tetradecanoyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.354508	1388.69446	1.6413	0.0011413	0.96264	0.00066938	2.6039	0.0018106	695.355068433046	12.742	0.10643	12.742	12.697	12.804	0	432	34	1.035754240522	0.022130347528504	1.035754240522	418.974576161065	0	8.95198167026479						258	13	4	NaN	NaN	NaN	0.00039655	1	15101	85.622	76.108	1	56923			14541	909	12233	12576	14541	14541		
MVEPQYQELK	10	Unmodified	_MVEPQYQELK_			0	0	0	O00625	O00625	O00625	PIR	Pirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.815738	1263.61692	1.8047	0.001142	-2.8483	-0.0018025	-1.0437	-0.00066044	632.815493686116	7.19	0.20393	7.19	7.0836	7.2875	0	543	58	0.961130371139249	0.0384211546657859	0.961130371139249	389.167523955408	0	15.5569588453109						898	24	7	NaN	NaN	NaN	0.00015055	1	11322	98.009	87.307	1	420280			14542	95	12234	12577	14542	14542		
MVETLSNLLR	10	Unmodified	_MVETLSNLLR_			0	0	0	P18858	P18858	P18858	LIG1	DNA ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.326273	1174.63799	0.65622	0.00038607	0.1248	7.3424E-05	0.78102	0.0004595	588.326770658926	13.77	0.12412	13.77	13.726	13.85	0	591	37	0.928742107665821	0.0243181264417436	0.928742107665821	376.361080888771	0	9.85461548180132						202	15	3	NaN	NaN	NaN	0.0084266	1	8733	42.075	36.327	1	49440			14543	759	12235	12578	14543	14543		
MVFINNIALAQIK	13	Unmodified	_MVFINNIALAQIK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.926154	1473.83776	1.1067	0.00081663	-0.12004	-8.858E-05	0.98662	0.00072805	737.926252683435	16.067	0.15079	16.067	16.023	16.174	0	441	73	1.02971785871157	0.0482610995013308	1.02971785871157	416.295482739812	0	19.5110510558681						612	18	5	NaN	NaN	NaN	4.2233E-11	1	17714	142.56	128.11	1	285270			14544	1055	12236	12579	14544	14544		
MVGDVTGAQAYASTAK	16	Unmodified	_MVGDVTGAQAYASTAK_			0	0	0	Q01628;Q01629;P13164	Q01628	Q01628	IFITM3;IFITM2;IFITM1	Interferon-induced transmembrane protein 3;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.382505	1568.75046	3.062	0.0024048	-1.0171	-0.00079882	2.0449	0.001606	785.382117094271	7.2964	0.33693	7.2964	7.2343	7.5713	0	396	166	1.05987478976334	0.110271218988868	1.05987478976334	428.246151055392	0	44.5554753828172						2653	39	6	NaN	NaN	NaN	1.2818E-10	1	20622	149.02	123.43	1	1876600			14545	1517	12237	12580	14545	14545		
MVGDVTGAQAYASTAK	16	Oxidation (M)	_M(Oxidation (M))VGDVTGAQAYASTAK_	M(1)VGDVTGAQAYASTAK	M(120)VGDVTGAQAYASTAK	0	1	0	Q01628;Q01629;P13164	Q01628	Q01628	IFITM3;IFITM2;IFITM1	Interferon-induced transmembrane protein 3;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.379962	1584.74537	2.2781	0.0018074	-3.7511	-0.002976	-1.473	-0.0011686	793.378495815786	6.2944	0.25718	6.2944	6.1702	6.4274	0	402	58	1.05585747106793	0.0381882446994148	1.05585747106793	426.585271869192	0	15.4287327538917						720	30	5	NaN	NaN	NaN	6.9574E-06	1	21098	119.52	112.38	1	229270			14546	1517	12237	12581	14546	14546	537	
MVGDVTGAQAYASTAK	16	Oxidation (M)	_M(Oxidation (M))VGDVTGAQAYASTAK_	M(1)VGDVTGAQAYASTAK	M(100)VGDVTGAQAYASTAK	0	1	0	Q01628;Q01629;P13164	Q01628	Q01628	IFITM3;IFITM2;IFITM1	Interferon-induced transmembrane protein 3;Interferon-induced transmembrane protein 2;Interferon-induced transmembrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.379962	1584.74537	2.2546	0.0017887	-1.3344	-0.0010587	0.92019	0.00073006	793.379386830402	6.2678	0.12417	6.2678	6.2323	6.3565	0	306	34	1.12000185836644	0.0220025900053455	1.12000185836644	452.500740224278	0	8.88943905753115						263	15	3	NaN	NaN	NaN	2.4847E-06	1	21099	102.03	97.501	1	65153			14547	1517	12237	12581	14547	14547	537	
MVGGIAQIIAAQEEMLR	17	Unmodified	_MVGGIAQIIAAQEEMLR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.484239	1828.95392	0.67598	0.00061885	0.86542	0.00079228	1.5414	0.0014111	915.484778767026	19.1	0.079818	19.1	19.073	19.153	0	276	40	1.13998907770044	0.0259637344402126	1.13998907770044	460.042765990412	0	10.4776689890837						169	10	3	NaN	NaN	NaN	7.3104E-05	1	27946	68.108	62.08	1	31664			14548	3406	12238	12582	14548	14548		
MVGGVLVER	9	Unmodified	_MVGGVLVER_			0	0	0	Q9UHV9	Q9UHV9	Q9UHV9	PFDN2	Prefoldin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.27077	958.526987	-0.29812	-0.00014318	-1.5729	-0.00075543	-1.8711	-0.00089861	480.270153035829	7.5447	0.30159	7.5447	7.394	7.6956	0	723	46	0.839303037468863	0.030585949193784	0.839303037468863	341.005597901958	0	12.4269535872044						609	35	3	NaN	NaN	NaN	0.034151	1	3411	33.426	5.7214	1	367530			14549	3223	12239	12583	14549	14549		
MVGVPAALDMMLTGR	15	Unmodified	_MVGVPAALDMMLTGR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.398589	1560.78263	0.54614	0.00042676	-0.91444	-0.00071454	-0.3683	-0.00028779	781.398602444072	19.171	0.24824	19.171	19.064	19.312	0	423	46	1.04178812298108	0.030161093191106	1.04178812298108	420.956970670347	0	12.1872405163373						721	29	4	NaN	NaN	NaN	4.2595E-06	1	20365	78.043	72.948	1	163720			14550	1026	12240	12584	14550	14550		
MVHNGIEYGDMQLICEAYHLMK	22	Unmodified	_MVHNGIEYGDMQLICEAYHLMK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	663.80739	2651.20046	-0.56576	-0.00037555	-0.60157	-0.00039933	-1.1673	-0.00077488	664.057567824728	16.98	0.12412	16.98	16.936	17.06	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	769.026614334802	0	14.6605022912014						385	15	6	NaN	NaN	NaN	0.00058225	1	37439	38.668	37.857	1	102310			14551	1205	12241	12585	14551	14551		
MVHNGIEYGDMQLICEAYHLMK	22	Unmodified	_MVHNGIEYGDMQLICEAYHLMK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	884.740762	2651.20046	0.9284	0.00082139	2.4613	0.0021776	3.3897	0.002999	885.411663962791	16.98	0.097526	16.98	16.936	17.034	0	264	37	1.14797626962532	0.023954989793705	1.14797626962532	693.273118288155	0	14.4666322050919						292	12	5	NaN	NaN	NaN	0.00033267	1	37440	43.904	43.624	1	62539			14552	1205	12241	12585	14552	14552		
MVIITGPPEAQFK	13	Unmodified	_MVIITGPPEAQFK_			0	0	0	O00425;Q9Y6M1;Q9NZI8	O00425;Q9NZI8	O00425	IGF2BP3;IGF2BP2;IGF2BP1	Insulin-like growth factor 2 mRNA-binding protein 3;Insulin-like growth factor 2 mRNA-binding protein 2;Insulin-like growth factor 2 mRNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.889238	1429.76392	1.5467	0.0011073	-0.54935	-0.00039327	0.99733	0.00071398	715.889472670497	12.396	0.16846	12.396	12.316	12.485	0	438	46	1.03173026378327	0.030194421347751	1.03173026378327	417.228630988188	0	12.2105336294071						267	20	2	NaN	NaN	NaN	0.0072588	1	16393	54.584	41.409	1	171710			14553	78;3132	12242	12586	14553	14553		
MVINHLEK	8	Unmodified	_MVINHLEK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.27077	982.526987	1.8596	0.00091545	0.58319	0.00028709	2.4428	0.0012025	492.271427380284	4.042	0.37244	4.042	3.9888	4.3613	0	666	43	0.877991458330206	0.0284736285227984	0.877991458330206	356.601312682761	0	11.5647290320818						651	43	5	NaN	NaN	NaN	0.0010069	1	3897	117.39	51.301	1	269520			14554	1174	12243	12587	14554	14554		
MVLAAAGGVEHQQLLDLAQK	20	Unmodified	_MVLAAAGGVEHQQLLDLAQK_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.045496	2091.11466	1.6989	0.0011859	-0.55819	-0.00038965	1.1407	0.00079624	698.378941538053	12.795	0.23945	12.795	12.724	12.963	0	489	73	0.997481546940468	0.0484347476913899	0.997481546940468	603.228761847024	0	29.291000891061						766	28	6	NaN	NaN	NaN	2.2462E-08	1	33209	135.24	121.46	1	303730			14555	927	12244	12588	14555	14555		
MVLAGVGVEHEHLVDCAR	18	Unmodified	_MVLAGVGVEHEHLVDCAR_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.66451	1990.9717	1.1116	0.00073883	-1.5121	-0.0010051	-0.40056	-0.00026624	664.998060682461	9.0706	0.11528	9.0706	9.0262	9.1415	0	570	25	0.942920803299286	0.016196370719784	0.942920803299286	570.422046897241	0	9.79803065746262						316	14	5	NaN	NaN	NaN	4.5511E-06	1	31475	76.563	75.944	1	101780			14556	1590	12245	12589	14556	14556		
MVLAGVGVEHEHLVDCAR	18	Unmodified	_MVLAGVGVEHEHLVDCAR_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	498.750201	1990.9717	0.0021522	1.0734E-06	-0.039349	-1.9625E-05	-0.037196	-1.8552E-05	498.750126972999	9.0617	0.12415	9.0617	9.0085	9.1326	0	690	34	0.86171403876517	0.0223892235225879	0.86171403876517	695.058672905063	0	18.0591510511824						359	15	5	NaN	NaN	NaN	0.040934	1	31476	11.209	11.144	1	110730			14557	1590	12245	12589	14557	14557		
MVLLDLPSISSQVVR	15	Unmodified	_MVLLDLPSISSQVVR_			0	0	0	Q5VIR6	Q5VIR6	Q5VIR6	VPS53	Vacuolar protein sorting-associated protein 53 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.97129	1655.92803	1.6424	0.0013615	-0.25456	-0.00021103	1.3878	0.0011504	828.971129333385	17.912	0.070911	17.912	17.876	17.947	0	333	25	1.10198982404297	0.0160228284041832	1.10198982404297	445.057713170845	0	6.47109729374108						159	9	3	NaN	NaN	NaN	0.037986	1	23229	22.142	17.326	1	27235			14558	2006	12246	12590	14558	14558		
MVLLESEQFLTELTR	15	Unmodified	_MVLLESEQFLTELTR_			0	0	0	P37108	P37108	P37108	SRP14	Signal recognition particle 14 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.97677	1807.93899	0.75048	0.00067917	1.1373	0.0010292	1.8878	0.0017084	904.977725658348	19.339	0.062069	19.339	19.312	19.375	0	270	46	1.14398322290989	0.0299457990426275	1.14398322290989	461.694987856701	0	12.0856888881439						149	8	4	NaN	NaN	NaN	0.00027012	1	27436	35.845	32.951	1	29449			14559	997	12247	12591	14559	14559		
MVLNESLK	8	Unmodified	_MVLNESLK_			0	0	0	P56182	P56182	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.257328	932.500103	-0.41894	-0.00019575	2.5031	0.0011696	2.0842	0.00097383	467.25838538419	6.986	0.070914	6.986	6.9594	7.0303	0	714	49	0.845418525735192	0.0326000897704161	0.845418525735192	343.625796005149	0	13.2505161126637						136	9	2	NaN	NaN	NaN	0.029936	1	2919	45.489	29.991	1	25009			14560	1283	12248	12592	14560	14560		
MVLSGCAIIVR	11	Unmodified	_MVLSGCAIIVR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.838494	1217.66243	0.57112	0.00034829	-1.6655	-0.0010157	-1.0944	-0.00066742	609.837972031321	11.465	0.13301	11.465	11.429	11.562	0	549	40	0.957085760909907	0.0262881524128359	0.957085760909907	387.687891451596	0	10.6485738220589						210	16	3	NaN	NaN	NaN	0.048632	1	9961	42.075	26.493	1	41241			14561	2108	12249	12593	14561	14561		
MVLTLTQQNDESK	13	Unmodified	_MVLTLTQQNDESK_			0	0	0	Q15154	Q15154	Q15154	PCM1	Pericentriolar material 1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.877056	1505.73956	1.8171	0.0013699	-2.0671	-0.0015583	-0.25	-0.00018847	753.876235746034	8.4495	0.17734	8.4495	8.3697	8.547	0	417	46	1.04580932352505	0.030161093191106	1.04580932352505	422.717637693087	0	12.1911573909199						380	21	3	NaN	NaN	NaN	0.00030484	1	18676	68.49	57.788	1	79863			14562	1817	12250	12594	14562	14562		
MVMESGDWLVGGDLQVLEK	19	Unmodified	_MVMESGDWLVGGDLQVLEK_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.51593	2105.01731	1.1284	0.0011888	-0.16042	-0.000169	0.96799	0.0010198	1053.51541266203	18.204	0.070925	18.204	18.178	18.248	0	171	22	1.20972836110953	0.013915318381349	1.20972836110953	487.703900241991	0	5.60998259267774						118	9	3	NaN	NaN	NaN	0.0016121	1	33388	29.217	28.598	1	18126			14563	422	12251	12595	14563	14563		
MVMIQDGPLPTGADK	15	Unmodified	_MVMIQDGPLPTGADK_			0	0	0	Q96I24	Q96I24	Q96I24	FUBP3	Far upstream element-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.891651	1571.76875	2.3302	0.0018336	-1.7472	-0.0013748	0.58301	0.00045876	787.391676116175	11.039	0.21283	11.039	10.95	11.163	0	402	52	1.05585747106793	0.0341589991885669	1.05585747106793	426.615773740288	0	13.8018324142603						796	25	5	NaN	NaN	NaN	1.7833E-06	1	20714	63.908	56.351	1	229990			14564	2554	12252	12596	14564	14564		
MVMIQDGPQNTGADK	15	Unmodified	_MVMIQDGPQNTGADK_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.87399	1603.73343	2.6671	0.0021414	-1.8909	-0.0015181	0.77627	0.00062325	802.873157138476	6.8353	0.337	6.8353	6.7377	7.0747	0	435	58	1.03374239103424	0.0382198802455282	1.03374239103424	417.607536539065	0	15.4399298844508						1459	39	6	NaN	NaN	NaN	6.4074E-12	1	21700	158.59	140.86	1	756940			14565	2473	12253	12597	14565	14565		
MVMIQDGPQNTGADK	15	Oxidation (M)	_M(Oxidation (M))VMIQDGPQNTGADK_	M(0.998)VM(0.002)IQDGPQNTGADK	M(26)VM(-26)IQDGPQNTGADK	0	1	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.871447	1619.72834	2.185	0.0017717	-1.2638	-0.0010248	0.92117	0.00074695	810.870367670246	5.2568	0.17736	5.2568	5.177	5.3544	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.133535029644	0	7.31808013627267						279	21	3	NaN	NaN	NaN	6.2509E-06	1	22173	83.214	74.461	2	58347			14566	2473	12253	12598	14566	14566	604	
MVNDAEPDTK	10	Unmodified	_MVNDAEPDTK_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.252971	1118.49139	1.2995	0.00072804	0.67056	0.00037568	1.9701	0.0011037	560.253491082657	2.6409	0.17736	2.6409	2.5966	2.774	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	348.576659441019	0	7.43074248280817						176	21	3	NaN	NaN	NaN	0.0088446	1	7215	46.033	38.882	1	29547			14567	3072	12254	12599	14567	14567		
MVNHFIAEFK	10	Unmodified	_MVNHFIAEFK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.546231	1234.61686	-1.5311	-0.00063164	-0.55241	-0.00022789	-2.0835	-0.00085953	412.546004069318	9.1238	0.21284	9.1238	9.0794	9.2923	0	792	127	0.792332785124922	0.0860649197612635	0.792332785124922	481.348357208529	0	52.2851111529312						1527	25	6	NaN	NaN	NaN	0.023275	1	10456	41.796	26.214	1	1456900			14568	640	12255	12600	14568	14568		
MVNHFIAEFK	10	Unmodified	_MVNHFIAEFK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.315709	1234.61686	1.9805	0.0012246	0.64662	0.00039981	2.6271	0.0016244	618.31590550031	9.1326	0.47002	9.1326	9.0085	9.4785	0	522	61	0.975277694896658	0.0404237385553284	0.975277694896658	394.996101428027	0	16.3719720219711						1236	54	6	NaN	NaN	NaN	4.3298E-05	1	10460	111.61	90.518	1	1150200			14569	640	12255	12600	14569	14569		
MVNHFIAEFK	10	Oxidation (M)	_M(Oxidation (M))VNHFIAEFK_	M(1)VNHFIAEFK	M(79)VNHFIAEFK	0	1	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.313166	1250.61178	2.0209	0.0012657	-0.026574	-1.6644E-05	1.9943	0.0012491	626.31297630957	7.9527	0.29273	7.9527	7.8906	8.1833	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	393.303952333512	0	9.81907342644377						781	34	5	NaN	NaN	NaN	0.00023336	1	10930	78.932	48.339	1	384650			14570	640	12255	12601	14570	14570	189	
MVNPTTVLESPHSLPAK	17	Unmodified	_MVNPTTVLESPHSLPAK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.65735	1819.95022	1.2971	0.00078819	0.30114	0.00018299	1.5982	0.00097118	607.992264571275	10.95	0.19509	10.95	10.844	11.039	0	546	34	0.959108205975751	0.0222438199941358	0.959108205975751	580.591584267384	0	13.4651904864219						489	23	4	NaN	NaN	NaN	0.0080346	1	27728	54.309	31.411	1	136230			14571	2149	12256	12602	14571	14571		
MVNPTVFFDIAVDGEPLGR	19	Unmodified	_MVNPTVFFDIAVDGEPLGR_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.02478	2076.03501	0.93235	0.00096873	0.38394	0.00039892	1.3163	0.0013677	1039.52729322632	19.978	0.070951	19.978	19.951	20.022	0	168	61	1.21171599086077	0.039733529145515	1.21171599086077	488.549909153586	0	16.0201005852891						357	9	5	NaN	NaN	NaN	4.5169E-05	1	32961	71.935	68.085	1	108750			14572	1417	12257	12603	14572	14572		
MVNPTVFFDIAVDGEPLGR	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))MVNPTVFFDIAVDGEPLGR_			1	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.03006	2118.04558	-0.086996	-9.2218E-05	1.395	0.0014788	1.308	0.0013866	1060.53316802705	20.297	0.05319	20.297	20.279	20.332	0	72	118	1.27517645957152	0.0772948105772264	1.27517645957152	514.068673379649	0	31.1602683960443						458	7	5	NaN	NaN	NaN	1.1975E-20	1	33590	187.49	176.52	1	203720			14573	1417	12257	12604	14573	14573		
MVNPTVFFDIAVDGEPLGR	19	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))M(Oxidation (M))VNPTVFFDIAVDGEPLGR_	M(1)VNPTVFFDIAVDGEPLGR	M(44)VNPTVFFDIAVDGEPLGR	1	1	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.02752	2134.04049	0.18003	0.00019228	0.23348	0.00024937	0.41352	0.00044165	1068.52893740126	20.19	0.062063	20.19	20.164	20.226	0	87	97	1.26527909472281	0.0633996268725658	1.26527909472281	510.053793879011	0	25.5573812542521						259	8	4	NaN	NaN	NaN	0.00062295	1	33797	43.518	40.803	1	69873			14574	1417	12257	12605	14574	14574	507	
MVNSNLASVEELK	13	Unmodified	_MVNSNLASVEELK_			0	0	0	P08559	P08559	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.368866	1432.72318	2.004	0.0014376	-1.0422	-0.00074764	0.96176	0.00068993	717.367167664684	10.01	0.20391	10.01	9.9484	10.152	0	465	70	1.01360860968299	0.0463045233633073	1.01360860968299	409.892178052292	0	18.7250401720593						620	24	4	NaN	NaN	NaN	0.0047592	1	16476	76.255	64.298	1	280290			14575	583	12258	12606	14575	14575		
MVPAGMGAGLER	12	Unmodified	_MVPAGMGAGLER_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.796826	1187.5791	1.5913	0.00094651	0.71113	0.00042298	2.3025	0.0013695	594.797020500611	7.864	0.38148	7.864	7.7309	8.1124	0	591	55	0.928742107665821	0.0364923641742785	0.928742107665821	376.313470997498	0	14.7862018034706						782	44	3	NaN	NaN	NaN	0.055211	1	9083	47.334	36.632	1	475310			14576	1206	12259	12607	14576	14576		
MVQQCCTYVEEITDLPIK	18	Unmodified	_MVQQCCTYVEEITDLPIK_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1114.02581	2226.03706	0.71115	0.00079224	-0.50076	-0.00055786	0.21038	0.00023437	1114.52709562846	15.712	0.1596	15.712	15.659	15.819	0	72	88	1.27517645957152	0.0574598353107501	1.27517645957152	513.906184377695	0	23.1567674402024						809	19	5	NaN	NaN	NaN	5.0747E-07	1	34948	67.838	62.757	1	157200			14577	64	12260	12608	14577	14577		
MVQQSDLGQYVTFLR	15	Unmodified	_MVQQSDLGQYVTFLR_			0	0	0	Q9H553	Q9H553	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.953629	1783.8927	1.5736	0.0014052	-3.2424	-0.0028953	-1.6688	-0.0014902	893.451502220089	15.828	0.088667	15.828	15.783	15.872	0	291	37	1.12999890578964	0.0239846644495882	1.12999890578964	456.097928994104	0	9.68085519997146						227	11	4	NaN	NaN	NaN	0.0013618	1	26800	58.338	55.253	1	37980			14578	2899	12261	12609	14578	14578		
MVQVHELGCEGISK	14	Unmodified	_MVQVHELGCEGISK_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.593692	1585.75925	-1.3619	-0.00072126	-0.4068	-0.00021544	-1.7687	-0.0009367	529.5933050607	6.7732	0.10641	6.7732	6.7466	6.853	0	798	34	0.788241307691771	0.0225046954516063	0.788241307691771	477.690059805241	0	13.6382973224999						265	13	4	NaN	NaN	NaN	0.0027554	1	21125	39.166	36.495	1	82503			14579	1850	12262	12610	14579	14579		
MVQVHELGCEGISK	14	Unmodified	_MVQVHELGCEGISK_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.8869	1585.75925	2.2908	0.0018186	-1.497	-0.0011885	0.79376	0.00063016	793.885660148191	6.7821	0.079824	6.7821	6.7466	6.8264	0	372	34	1.07593298845566	0.022069372225481	1.07593298845566	434.69372313476	0	8.91637089193733						242	10	4	NaN	NaN	NaN	0.003232	1	21127	63.766	52.411	1	63109			14580	1850	12262	12610	14580	14580		
MVQVHELSCEGISK	14	Unmodified	_MVQVHELSCEGISK_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.597214	1615.76981	-1.0787	-0.00058205	0.3916	0.0002113	-0.68708	-0.00037075	539.597449991847	6.9328	0.062067	6.9328	6.9151	6.9771	0	786	37	0.796423123669906	0.0245352049516095	0.796423123669906	482.570878371033	0	14.8664385207113						239	8	4	NaN	NaN	NaN	0.00096774	1	22067	49.097	42.35	1	58784			14581	1851	12263	12611	14581	14581		
MVQVHELSCEGISK	14	Unmodified	_MVQVHELSCEGISK_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.892183	1615.76981	2.7619	0.0022341	-2.5136	-0.0020332	0.24836	0.00020089	809.391105369692	6.9328	0.14185	6.9328	6.8353	6.9771	0	366	58	1.07994477139643	0.0381250913283928	1.07994477139643	436.244381624184	0	15.4006550440671						263	17	3	NaN	NaN	NaN	0.00034529	1	22070	52.863	47.712	1	62021			14582	1851	12263	12611	14582	14582		
MVSDINNAWGCLEQVEK	17	Unmodified	_MVSDINNAWGCLEQVEK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.961325	1991.9081	1.725	0.0017197	0.2405	0.00023977	1.9655	0.0019595	996.96285894366	14.631	0.14187	14.631	14.595	14.737	0	225	55	1.17390432875292	0.0358732713837995	1.17390432875292	473.437475333164	0	14.467747174874						670	17	5	NaN	NaN	NaN	3.044E-15	1	31489	139.7	128.73	1	186540			14583	671	12264	12612	14583	14583		
MVSDINNGWQHLEQAEK	17	Unmodified	_MVSDINNGWQHLEQAEK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.982784	1997.92652	1.1203	0.0007472	1.5182	0.0010126	2.6385	0.0017598	667.318089196693	10.108	0.079792	10.108	10.073	10.152	0	585	82	0.932794566565362	0.0547575420218167	0.932794566565362	564.282558777473	0	33.1248991277981						519	10	4	NaN	NaN	NaN	6.6495E-05	1	31597	86.729	84.182	1	110940			14584	221	12265	12613	14584	14584		
MVSEEMEEQVHSIR	14	Unmodified	_MVSEEMEEQVHSIR_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.595762	1702.76546	0.65427	0.00037201	0.58306	0.00033153	1.2373	0.00070354	568.596339500304	7.8995	0.10639	7.8995	7.8729	7.9793	-8.8818E-16	660	22	0.882057989648486	0.0142298979470937	0.882057989648486	534.227103766028	0	8.61847776039247						207	13	4	NaN	NaN	NaN	5.4494E-05	1	24575	78.043	76.059	1	59466			14585	2664	12266	12614	14585	14585		
MVSEEMEEQVHSIR	14	Unmodified	_MVSEEMEEQVHSIR_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.390004	1702.76546	2.2014	0.0018765	-0.79699	-0.00067934	1.4044	0.0011971	852.389716638257	7.9083	0.079797	7.9083	7.8729	7.9527	0	264	28	1.14797626962532	0.0179674763675075	1.14797626962532	463.524302711763	0	7.25482065710054						173	10	4	NaN	NaN	NaN	9.148E-08	1	24576	124.06	120.32	1	36762			14586	2664	12266	12614	14586	14586		
MVSISNYPLSAALTCAK	17	Unmodified	_MVSISNYPLSAALTCAK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.462972	1824.91139	1.4289	0.0013053	2.7756	0.0025354	4.2046	0.0038407	914.469590928579	15.021	0.37244	15.021	14.764	15.136	0	237	97	1.16593139812432	0.0637747573565637	1.16593139812432	470.519630965915	0	25.7367417539531						738	43	5	NaN	NaN	NaN	1.5604E-06	1	27852	110.91	95.377	1	159150			14587	2450	12267	12615	14587	14587		
MVSSYVGENAEFER	14	Unmodified	_MVSSYVGENAEFER_			0	0	0	P55809	P55809	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.364312	1616.71407	2.467	0.0019967	-0.6448	-0.00052188	1.8222	0.0014748	809.363632696254	8.6712	0.20418	8.6712	8.6268	8.831	0	396	40	1.05987478976334	0.0261071745349262	1.05987478976334	428.134967390046	0	10.5459573395953						473	24	3	NaN	NaN	NaN	8.7249E-12	1	22091	143.22	132.25	1	141260			14588	1279	12268	12616	14588	14588		
MVTGDNINTAR	11	Unmodified	_MVTGDNINTAR_			0	0	0	P20020;Q16720;Q01814;P23634	P20020;P23634	P20020	ATP2B1;ATP2B3;ATP2B2;ATP2B4	Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 3;Plasma membrane calcium-transporting ATPase 2;Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.292962	1190.57137	1.2995	0.0007749	-2.4422	-0.0014562	-1.1426	-0.00068134	596.292170945061	4.2194	0.12413	4.2194	4.1751	4.2992	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	365.618827927216	0	7.40262806495247						203	15	3	NaN	NaN	NaN	0.0040343	1	9175	39.039	32.808	1	64833			14589	775;825	12269	12617	14589	14589		
MVTMVEIDQMVIDGCK	16	Unmodified	_MVTMVEIDQMVIDGCK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.625676	1867.8552	-0.92911	-0.00057941	-0.46138	-0.00028773	-1.3905	-0.00086714	623.625599438712	17.264	0.053231	17.264	17.246	17.3	0	615	22	0.912521036363781	0.0142022930717167	0.912521036363781	552.283223654464	0	8.59562452629996						80	7	3	NaN	NaN	NaN	0.044317	1	28874	25.588	24.849	1	13117			14590	1222	12270	12618	14590	14590		
MVTMVEIDQMVIDGCK	16	Unmodified	_MVTMVEIDQMVIDGCK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.934876	1867.8552	0.5257	0.0004915	3.62	0.0033844	4.1457	0.0038759	934.936643273601	17.264	0.097548	17.264	17.22	17.317	0	201	37	1.18983705239708	0.0238892429642199	1.18983705239708	480.083642299441	0	9.6389961557623						222	12	5	NaN	NaN	NaN	9.2352E-07	1	28876	100.07	93.216	1	66948			14591	1222	12270	12618	14591	14591		
MVVDAVMMLDDLLQLK	16	Unmodified	_MVVDAVMMLDDLLQLK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.479776	1832.945	0.65361	0.00059967	-1.4767	-0.0013549	-0.82314	-0.00075521	917.478699653911	20.235	0.026593	20.235	20.235	20.261	0	225	34	1.17390432875292	0.0219240556368867	1.17390432875292	473.721515563757	0	8.84731115579353						86	4	4	NaN	NaN	NaN	0.0001613	1	28060	95.138	85.117	1	17406			14592	2679	12271	12619	14592	14592		
MVVDAVMMLDDLLQLK	16	Unmodified	_MVVDAVMMLDDLLQLK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	611.988943	1832.945	-0.71787	-0.00043933	2.7106	0.0016588	1.9927	0.0012195	612.325256369707	20.235	0.0088786	20.235	20.235	20.244	0	549	13	0.957085760909907	0.00809034030056055	0.957085760909907	579.336264816369	0	4.89718656598143						16	2	2	NaN	NaN	NaN	0.053596	1	28061	18.811	17.93	1	3258.6			14593	2679	12271	12619	14593	14593		
MVVESAYEVIK	11	Unmodified	_MVVESAYEVIK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.333764	1266.65297	2.1121	0.0013398	0.2881	0.00018275	2.4002	0.0015225	634.334659909812	10.826	0.44339	10.826	10.729	11.172	0	510	121	0.983355730988811	0.080802864396218	0.983355730988811	398.15637662886	0	32.716721625124						2057	51	5	NaN	NaN	NaN	0.0026416	1	11417	69.915	59.213	1	1549200			14594	553	12272	12620	14594	14594		
MVVESAYEVIK	11	Oxidation (M)	_M(Oxidation (M))VVESAYEVIK_	M(1)VVESAYEVIK	M(97)VVESAYEVIK	0	1	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.331221	1282.64789	1.7573	0.0011288	-1.496	-0.0009609	0.26135	0.00016787	642.331021576563	9.0085	0.21285	9.0085	8.9109	9.1238	0	501	67	0.98941132619024	0.0443985138367106	0.98941132619024	400.554385799773	0	17.9743439048391						1017	25	5	NaN	NaN	NaN	0.0021081	1	11841	97.277	84.004	1	506590			14595	553	12272	12621	14595	14595	131	
MVVNEGSDGGQSVYHVHLHVLGGR	24	Unmodified	_MVVNEGSDGGQSVYHVHLHVLGGR_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	637.568486	2546.24484	0.65433	0.00041718	1.0759	0.00068595	1.7302	0.0011031	637.819895990159	9.2479	0.23948	9.2479	9.2036	9.443	0	639	58	0.896281965493857	0.0385758304413828	0.896281965493857	721.850508356199	0	31.0683288143944						912	28	6	NaN	NaN	NaN	9.9845E-33	1	37010	193.56	187.98	1	392470			14596	1149	12273	12622	14596	14596		
MVVNEGSDGGQSVYHVHLHVLGGR	24	Unmodified	_MVVNEGSDGGQSVYHVHLHVLGGR_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	849.755556	2546.24484	1.5676	0.0013321	1.2958	0.0011011	2.8634	0.0024332	850.091065977062	9.2479	0.097591	9.2479	9.2213	9.3189	0	408	94	1.0518390438467	0.0623243787726715	1.0518390438467	635.351546692816	0	37.6463401710888						698	12	4	NaN	NaN	NaN	1.1206E-18	1	37011	127.62	121.72	1	154600			14597	1149	12273	12622	14597	14597		
MVVNEGSDGGQSVYHVHLHVLGGR	24	Oxidation (M)	_M(Oxidation (M))VVNEGSDGGQSVYHVHLHVLGGR_	M(1)VVNEGSDGGQSVYHVHLHVLGGR	M(76)VVNEGSDGGQSVYHVHLHVLGGR	0	1	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	641.567215	2562.23975	1.1874	0.00076178	0.68744	0.00044104	1.8748	0.0012028	641.818570504962	8.3697	0.079869	8.3697	8.3342	8.414	0	609	37	0.916577990479294	0.0243383549190614	0.916577990479294	738.171593480245	0	19.6010404132622						272	10	6	NaN	NaN	NaN	1.3152E-06	1	37076	75.969	75.37	1	94768			14598	1149	12273	12623	14598	14598	417	
MVVPAALK	8	Unmodified	_MVVPAALK_			0	0	0	P40429;Q6NVV1	P40429	P40429	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	414.754224	827.493896	-0.078502	-3.2559E-05	-0.20625	-8.5542E-05	-0.28475	-0.0001181	414.754203322296	7.9083	0.20416	7.9083	7.8729	8.077	0	684	70	0.86578508874114	0.0468268573542485	0.86578508874114	352.551581814449	0	19.0681069081982						456	24	3	NaN	NaN	NaN	0.05399	1	1275	51.456	43.453	1	154550			14599	1018	12274	12624	14599	14599		
MVVPAALK	8	Oxidation (M)	_M(Oxidation (M))VVPAALK_	M(1)VVPAALK	M(51)VVPAALK	0	1	0	P40429;Q6NVV1	P40429	P40429	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.751682	843.48881	0.49891	0.00021092	6.9044	0.0029189	7.4033	0.0031298	422.754407079616	5.5937	0.23944	5.5937	5.5317	5.7711	0	711	94	0.847456455381371	0.063149567199428	0.847456455381371	344.981392139097	0	25.7068377579782						609	28	2	NaN	NaN	NaN	0.067418	1	1471	51.456	44.106	1	128690			14600	1018	12274	12625	14600	14600	370	
MVVPGLDGAQIPR	13	Unmodified	_MVVPGLDGAQIPR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.871379	1351.72821	2.2825	0.001545	-2.504	-0.0016949	-0.22146	-0.0001499	676.87079230991	12.866	0.35473	12.866	12.662	13.017	0	492	61	0.995464410099171	0.0403455444968032	0.995464410099171	402.78543158457	0	16.3246394223581						1317	41	6	NaN	NaN	NaN	0.004061	1	13944	50.297	41.32	1	678960			14601	1127	12275	12626	14601	14601		
MVVPLACLLTPLK	13	Unmodified	_MVVPLACLLTPLK_			0	0	0	Q15437	Q15437	Q15437	SEC23B	Protein transport protein Sec23B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.927309	1453.84006	0.47572	0.00034629	-1.0012	-0.00072878	-0.52545	-0.00038249	727.926653262315	19.499	0.079789	19.499	19.463	19.543	0	453	31	1.02166545906632	0.0201365621499445	1.02166545906632	413.092891894092	0	8.14187326928686						217	10	4	NaN	NaN	NaN	0.00023838	1	17085	68.49	58.748	1	45611			14602	1851	12276	12627	14602	14602		
MVVPVAALFTPLK	13	Unmodified	_MVVPVAALFTPLK_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.414891	1384.81523	0.1205	8.3554E-05	-0.78947	-0.00054743	-0.66897	-0.00046387	693.414739862514	19.046	0.11527	19.046	18.993	19.109	0	522	52	0.975277694896658	0.0343245429890272	0.975277694896658	394.522015123373	0	13.8850585213628						443	14	4	NaN	NaN	NaN	0.004384	1	14992	41.824	38.721	1	139730			14603	1850	12277	12628	14603	14603		
MVWDSQASEHFFEYK	15	Unmodified	_MVWDSQASEHFFEYK_			0	0	0	Q9BWS9	Q9BWS9	Q9BWS9	CHID1	Chitinase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.419619	1902.82468	1.3805	0.0013148	0.8574	0.0008166	2.2379	0.0021314	952.92149901303	13.283	0.053193	13.283	13.256	13.309	0	168	22	1.21171599086077	0.0139134090445729	1.21171599086077	488.845271394207	0	5.61311748933934						106	7	3	NaN	NaN	NaN	0.031811	1	29658	25.588	24.317	1	20029			14604	2782	12278	12629	14604	14604		
MWDLSSNQAIQIAQHDAPVK	20	Unmodified	_MWDLSSNQAIQIAQHDAPVK_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	751.375793	2251.10555	0.83587	0.00062806	0.97979	0.00073619	1.8157	0.0013642	751.710674431606	13.717	0.11526	13.717	13.664	13.779	0	477	49	1.0055473068722	0.0322585904613818	1.0055473068722	607.821595781281	0	19.4992993346896						536	14	5	NaN	NaN	NaN	2.7861E-11	1	35189	92.593	88.834	1	141570			14605	1462	12279	12630	14605	14605		
MWDPHNDPNAQGDAFK	16	Unmodified	_MWDPHNDPNAQGDAFK_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.933654	1841.77913	0.72748	0.00044735	0.86818	0.00053387	1.5957	0.00098122	614.934062975677	7.4472	0.18617	7.4472	7.3851	7.5713	0	672	49	0.873923798053065	0.0325503275293179	0.873923798053065	528.978235545396	0	19.7024212651523						641	22	5	NaN	NaN	NaN	9.0748E-09	1	28271	112.95	111.9	1	317310			14606	586	12280	12631	14606	14606		
MWDPHNDPNAQGDAFK	16	Unmodified	_MWDPHNDPNAQGDAFK_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.896842	1841.77913	2.8594	0.0026361	-0.48295	-0.00044523	2.3764	0.0021908	922.397949731181	7.4472	0.097532	7.4472	7.4028	7.5003	0	285	97	1.13399579921816	0.0639591718014674	1.13399579921816	457.600197551002	0	25.809381015105						674	12	3	NaN	NaN	NaN	1.4349E-08	1	28272	98.865	96.882	1	163620			14607	586	12280	12631	14607	14607		
MWDPHNDPNAQGDAFK	16	Oxidation (M)	_M(Oxidation (M))WDPHNDPNAQGDAFK_	M(1)WDPHNDPNAQGDAFK	M(49)WDPHNDPNAQGDAFK	0	1	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.265292	1857.77405	0.16231	0.00010068	1.7517	0.0010865	1.914	0.0011872	620.600644279475	6.2944	0.097576	6.2944	6.2323	6.3299	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	530.175289921324	0	9.84784060611787						103	12	3	NaN	NaN	NaN	0.0036344	1	28638	49.487	48.968	1	15370			14608	586	12280	12632	14608	14608	155	
MWFQWSEQR	9	Unmodified	_MWFQWSEQR_			0	0	0	O15260	O15260	O15260	SURF4	Surfeit locus protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.292765	1296.57098	1.4715	0.00095543	-0.67848	-0.00044053	0.79301	0.00051489	649.29261299455	13.824	0.15959	13.824	13.77	13.93	0	543	46	0.961130371139249	0.0303408835335462	0.961130371139249	389.060571021476	0	12.2818317132831						478	19	4	NaN	NaN	NaN	0.00080199	1	12244	84.368	78.502	1	166920			14609	158	12281	12633	14609	14609		
MWSIENIAFGSGGGLLQK	18	Unmodified	_MWSIENIAFGSGGGLLQK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.660983	1906.96112	-0.15599	-9.9312E-05	0.00024747	1.5755E-07	-0.15574	-9.9154E-05	636.66088999533	18.807	0.062081	18.807	18.781	18.843	0	582	22	0.934820374997243	0.0141806598395486	0.934820374997243	565.693951122331	0	8.58123518561479						144	8	4	NaN	NaN	NaN	0.042075	1	29747	34.472	33.853	1	31850			14610	1067	12282	12634	14610	14610		
MWSIENIAFGSGGGLLQK	18	Unmodified	_MWSIENIAFGSGGGLLQK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.487836	1906.96112	1.2816	0.0012233	-0.83147	-0.00079363	0.45014	0.00042965	954.988771146929	18.807	0.12412	18.807	18.763	18.887	0	237	64	1.16593139812432	0.0418838012737479	1.16593139812432	470.366911278034	0	16.8970097806862						628	15	5	NaN	NaN	NaN	3.7634E-19	1	29749	171.51	160.53	1	183970			14611	1067	12282	12634	14611	14611		
MWTPELAILR	10	Unmodified	_MWTPELAILR_			0	0	0	Q6P3X3	Q6P3X3	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.339184	1228.66381	0.18852	0.000116	-2.9614	-0.0018223	-2.7729	-0.0017063	615.337150839053	16.608	0.14186	16.608	16.546	16.688	0	585	37	0.932794566565362	0.0243080216588687	0.932794566565362	377.810313031047	0	9.84549181704432						333	17	4	NaN	NaN	NaN	0.0010643	1	10274	65.156	59.29	1	74693			14612	2066	12283	12635	14612	14612		
MWVQLLIPR	9	Unmodified	_MWVQLLIPR_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.338987	1154.66342	-0.013454	-7.7808E-06	-0.0085373	-4.9375E-06	-0.021991	-1.2718E-05	578.339093258624	17.513	0.25714	17.513	17.38	17.637	0	603	61	0.920633820089869	0.0405526946120233	0.920633820089869	373.150200626114	0	16.4367697560023						885	30	4	NaN	NaN	NaN	9.1696E-05	1	8202	81.32	56.47	1	331000			14613	1340	12284	12636	14613	14613		
MYAALGDPK	9	Unmodified	_MYAALGDPK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.241678	964.468803	0.19007	9.185E-05	0.65056	0.00031438	0.84063	0.00040623	483.242218685875	5.8775	0.22176	5.8775	5.8332	6.055	0	696	52	0.857641857947968	0.0346303797525405	0.857641857947968	348.426224405457	0	14.0689640496032						456	26	3	NaN	NaN	NaN	0.011783	1	3527	42.075	33.342	1	135800			14614	1465	12285	12637	14614	14614		
MYEEFLSK	8	Unmodified	_MYEEFLSK_			0	0	0	P10644;P31321	P10644	P10644	PRKAR1A;PRKAR1B	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed;cAMP-dependent protein kinase type I-beta regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.746793	1045.47903	0.37161	0.00019463	1.0666	0.00055861	1.4382	0.00075324	523.747084414135	9.0262	0.21283	9.0262	8.9819	9.1947	0	672	37	0.873923798053065	0.024412742353751	0.873923798053065	354.654002633275	0	9.90713012999674						317	25	3	NaN	NaN	NaN	0.020524	1	5359	47.349	40.587	1	102010			14615	633	12286	12638	14615	14615		
MYEEHLK	7	Unmodified	_MYEEHLK_			0	0	0	P84090	P84090	P84090	ERH	Enhancer of rudimentary homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.226028	948.437503	0.69524	0.0003304	0.17758	8.4392E-05	0.87283	0.00041479	475.226196625087	2.8449	0.30147	2.8449	2.8183	3.1198	0	720	34	0.841341816837976	0.0224234600075238	0.841341816837976	341.885348660792	0	9.11193558839835						451	35	3	NaN	NaN	NaN	0.028605	1	3207	56.091	32.782	1	173220			14616	1484	12287	12639	14616	14616		
MYFPDVEFDIK	11	Unmodified	_MYFPDVEFDIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.331221	1402.64789	0.14795	0.00010391	1.4217	0.00099848	1.5696	0.0011024	702.332018467011	16.714	0.15961	16.714	16.644	16.803	0	453	37	1.02166545906632	0.0241672134976301	1.02166545906632	413.234966253838	0	9.77495868683781						415	19	4	NaN	NaN	NaN	0.0062686	1	15529	36.24	26.726	1	102010			14617	1584	12288	12640	14617	14617		
MYGAQEDGSVGEGDLSCILK	20	Unmodified	_MYGAQEDGSVGEGDLSCILK_			0	0	0	Q8NF37	Q8NF37	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.97991	2127.94527	1.905	0.0020288	0.13609	0.00014493	2.0411	0.0021738	1065.48215902209	13.85	0.079788	13.85	13.806	13.886	0	192	58	1.1958073123591	0.0378168542095105	1.1958073123591	482.05756039096	0	15.2448478057332						283	10	4	NaN	NaN	NaN	6.744E-08	1	33712	75.969	74.543	1	52392			14618	2315	12289	12641	14618	14618		
MYGISLCQAILDETK	15	Unmodified	_MYGISLCQAILDETK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.428598	1740.84264	1.6593	0.0014459	0.56629	0.00049348	2.2256	0.0019394	871.429762722275	16.377	0.23055	16.377	16.307	16.537	0	309	70	1.11800162319566	0.0460244415732745	1.11800162319566	451.34155180755	0	18.5802439368392						1277	27	4	NaN	NaN	NaN	1.0093E-24	1	25626	214.78	203.42	1	1054200			14619	506	12290	12642	14619	14619		
MYGISLCQAILDETK	15	Oxidation (M)	_M(Oxidation (M))YGISLCQAILDETK_	M(1)YGISLCQAILDETK	M(76)YGISLCQAILDETK	0	1	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.426055	1756.83756	2.2945	0.0020179	4.8679	0.004281	7.1624	0.0062988	879.931582882694	15.411	0.1952	15.411	15.34	15.535	0	306	37	1.12000185836644	0.0239945682557239	1.12000185836644	452.116515588452	0	9.68600231489768						414	23	3	NaN	NaN	NaN	0.0099864	1	26062	75.5	72.415	1	178040			14620	506	12290	12643	14620	14620	86	
MYLFYGNK	8	Unmodified	_MYLFYGNK_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.252046	1034.48954	0.55637	0.00028834	1.6045	0.00083154	2.1609	0.0011199	518.25191566066	10.472	0.18625	10.472	10.418	10.605	0	678	25	0.869855008346864	0.0162774195650359	0.869855008346864	353.05155110537	0	6.60658175245828						260	22	2	NaN	NaN	NaN	0.033608	1	5102	42.229	6.5955	1	67856			14621	452	12291	12644	14621	14621		
MYLMLDNK	8	Unmodified	_MYLMLDNK_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.251188	1026.48782	0.035797	1.8408E-05	-0.36723	-0.00018885	-0.33144	-0.00017044	514.251262321031	10.339	0.18617	10.339	10.268	10.454	0	690	31	0.86171403876517	0.0203552522347787	0.86171403876517	349.783152943078	0	8.26251399575125						272	22	3	NaN	NaN	NaN	0.013463	1	4886	65.313	36.002	1	51282			14622	1044	12292	12645	14622	14622		
MYSDAFLNDSYLK	13	Unmodified	_MYSDAFLNDSYLK_			0	0	0	Q8N3U4;Q8WVM7	Q8N3U4	Q8N3U4	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.860874	1565.7072	2.0304	0.0015915	6.457	0.0050614	8.4873	0.0066529	783.864900846859	13.815	0.1862	13.815	13.726	13.912	0	375	52	1.07392668217569	0.0341119209023848	1.07392668217569	433.931218852799	0	13.7832755813404						276	22	2	NaN	NaN	NaN	0.056398	1	20517	34.193	12.189	1	131580			14623	2249	12293	12646	14623	14623		
MYSTDDGVQFHAFGR	15	Unmodified	_MYSTDDGVQFHAFGR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.591228	1729.75185	0.043685	2.5232E-05	0.93731	0.00054138	0.98099	0.00056661	577.59184442187	10.01	0.18618	10.01	9.9662	10.152	0	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	524.305280679268	0	14.7901161224497						506	22	5	NaN	NaN	NaN	1.0895E-06	1	25313	117.99	108.72	1	216720			14624	1796	12294	12647	14624	14624		
MYSYVTEELPQLINANFPVDPQR	23	Unmodified	_MYSYVTEELPQLINANFPVDPQR_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	908.782777	2723.3265	0.73931	0.00067187	-1.5842	-0.0014397	-0.84492	-0.00076785	909.115594943143	19.463	0.11531	19.463	19.392	19.508	0	450	37	1.02367897599655	0.0241605388886725	1.02367897599655	618.123474654144	0	14.5887495958824						349	14	5	NaN	NaN	NaN	1.8756E-06	1	37669	104.15	103.28	1	69907			14625	634	12295	12648	14625	14625		
MYTDIQEPMFSAAR	14	Unmodified	_MYTDIQEPMFSAAR_			0	0	0	Q9NRR5	Q9NRR5	Q9NRR5	UBQLN4	Ubiquilin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.378908	1658.74326	2.3251	0.0019307	3.4122	0.0028334	5.7373	0.0047641	830.38207252151	12.281	0.12417	12.281	12.219	12.343	0	360	37	1.08395544855938	0.0240640669775463	1.08395544855938	437.768039109477	0	9.71855386470014						239	15	3	NaN	NaN	NaN	0.0003333	1	23280	57.293	50.153	1	74757			14626	3025	12297	12649	14626	14626		
MYVQTVLDVHK	11	Unmodified	_MYVQTVLDVHK_			0	0	0	Q13616	Q13616	Q13616	CUL1	Cullin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.904196	1331.69076	-1.5081	-0.00067098	-1.3429	-0.00059745	-2.851	-0.0012684	444.904015179923	9.106	0.15962	9.106	9.0262	9.1858	0	852	25	0.751366682244005	0.0164092837353766	0.751366682244005	456.09358448435	0	9.96074115947852						231	19	3	NaN	NaN	NaN	0.043555	1	13352	39.01	35.402	1	65667			14627	1694	12298	12650	14627	14627		
NAAHALPTTLGALER	15	Unmodified	_NAAHALPTTLGALER_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.920446	1533.82634	1.6105	0.0012367	-1.0572	-0.00081185	0.5533	0.00042489	767.918632345801	9.4785	0.16848	9.4785	9.4164	9.5849	0	384	49	1.06790610341098	0.0321252637556668	1.06790610341098	431.577183834076	0	12.9829119033154						434	20	4	NaN	NaN	NaN	0.043452	1	19550	41.317	38.215	1	121450			14628	2289	12299	12651	14628	14628		
NAALNTIVTVYNVHGDQVFK	20	Unmodified	_NAALNTIVTVYNVHGDQVFK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.055049	2202.14332	0.81788	0.00060118	-0.54452	-0.00040025	0.27336	0.00020093	735.389006213744	14.32	0.070909	14.32	14.285	14.356	0	546	61	0.959108205975751	0.0404293325417993	0.959108205975751	579.829630765508	0	24.4415852286014						346	9	4	NaN	NaN	NaN	0.00050933	1	34710	58.508	56.776	1	73034			14629	1713	12300	12652	14629	14629		
NAATEDLWESLENASGK	17	Unmodified	_NAATEDLWESLENASGK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.92632	1833.83809	1.6271	0.0014935	0.09045	8.3027E-05	1.7175	0.0015766	917.926095063263	15.695	0.17733	15.695	15.642	15.819	0	297	46	1.12600091227925	0.0299911493699134	1.12600091227925	454.388733718898	0	12.1026903587354						781	21	5	NaN	NaN	NaN	2.2094E-10	1	28072	137.4	120.41	1	309030			14630	1277	12301	12653	14630	14630		
NADGTICYDSTHYK	14	Unmodified	_NADGTICYDSTHYK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.851569	1643.68859	2.92	0.0024027	-2.4486	-0.0020148	0.4714	0.00038789	822.850136470354	4.8578	0.15073	4.8578	4.8135	4.9642	0	369	37	1.07793901817685	0.024074020010092	1.07793901817685	435.371283825504	0	9.7233116362757						322	18	4	NaN	NaN	NaN	2.7141E-11	1	22852	115.05	110.81	1	95606			14631	698	12302	12654	14631	14631		
NADGTICYDSTHYK	14	Unmodified	_NADGTICYDSTHYK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.903472	1643.68859	0.51048	0.0002802	1.2692	0.00069665	1.7796	0.00097685	548.904531205005	4.8578	0.097535	4.8578	4.8223	4.9199	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	514.653556597242	0	9.87514111178677						205	12	4	NaN	NaN	NaN	0.0027448	1	22853	42.061	34.921	1	50285			14632	698	12302	12654	14632	14632		
NADHLLHLK	9	Unmodified	_NADHLLHLK_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.79854	1059.58253	1.3975	0.00074182	0.76926	0.00040832	2.1668	0.0011501	530.799058965611	4.4499	0.13299	4.4499	4.4145	4.5475	0	627	22	0.90440375274676	0.0142101719766599	0.90440375274676	366.959811284411	0	5.76574567612857						106	16	2	NaN	NaN	NaN	0.019985	1	5725	49.16	31.764	1	23575			14633	2465	12303	12655	14633	14633		
NADHSMNYQYR	11	Unmodified	_NADHSMNYQYR_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.866692	1397.57825	-0.63262	-0.00029535	2.1036	0.0009821	1.471	0.00068676	466.867612650591	3.3503	0.044322	3.3503	3.3326	3.3769	0	822	13	0.771863999559055	0.00819207561060242	0.771863999559055	468.309220009394	0	4.9703374450043						50	6	2	NaN	NaN	NaN	0.055737	1	15359	13.274	13.274	1	9854.4			14634	1606	12304	12656	14634	14634		
NADLNAQTVVK	11	Unmodified	_NADLNAQTVVK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.817127	1171.6197	1.6186	0.00094982	-1.0129	-0.0005944	0.60568	0.00035543	586.816909853704	5.5317	0.097528	5.5317	5.4873	5.5849	0	567	31	0.944945209309785	0.020242660886354	0.944945209309785	382.938639565966	0	8.2033296159866						137	12	3	NaN	NaN	NaN	0.036168	1	8652	39.293	25.645	1	48239			14635	3422	12305	12657	14635	14635		
NADMSEDMQQDAVDCATQAMEK	22	Unmodified	_NADMSEDMQQDAVDCATQAMEK_			0	0	0	Q96FJ2	Q96FJ2	Q96FJ2	DYNLL2	Dynein light chain 2, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1244.49019	2486.96582	1.2482	0.0015534	-0.33451	-0.00041629	0.91372	0.0011371	1244.99061547581	12.804	0.053202	12.804	12.777	12.83	0	66	31	1.27913350869533	0.0197852478439124	1.27913350869533	515.165279835432	0	7.96841977231816						107	7	3	NaN	NaN	NaN	0.001324	1	36763	40.363	40.321	1	15718			14636	2525	12306	12658	14636	14636		
NADMSEEMQQDSVECATQALEK	22	Unmodified	_NADMSEEMQQDSVECATQALEK_			0	0	0	P63167	P63167	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1257.52509	2513.03562	1.6258	0.0020445	-1.6993	-0.0021369	-0.07348	-9.2403E-05	1258.02497173359	12.751	0.070976	12.751	12.724	12.795	0	63	70	1.28111162701928	0.0455279051952959	1.28111162701928	515.932199108652	0	18.3351019168182						490	9	5	NaN	NaN	NaN	7.1736E-17	1	36890	152.02	151.77	1	115890			14637	1429	12307	12659	14637	14637		
NADMSEEMQQDSVECATQALEK	22	Unmodified	_NADMSEEMQQDSVECATQALEK_			0	0	0	P63167	P63167	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.685816	2513.03562	2.1939	0.00184	-0.3832	-0.00032138	1.8107	0.0015186	839.020232061878	12.742	0.12416	12.742	12.706	12.83	0	456	67	1.01965166402748	0.0443004570103382	1.01965166402748	615.953306239298	0	26.7611125701987						796	15	5	NaN	NaN	NaN	1.734E-08	1	36891	117.33	116.24	1	240340			14638	1429	12307	12659	14638	14638		
NADMSEEMQQDSVECATQALEK	22	Oxidation (M)	_NADM(Oxidation (M))SEEMQQDSVECATQALEK_	NADM(1)SEEMQQDSVECATQALEK	NADM(47)SEEM(-47)QQDSVECATQALEK	0	1	0	P63167	P63167	P63167	DYNLL1	Dynein light chain 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	844.017454	2529.03053	1.8497	0.0015612	0.60854	0.00051362	2.4582	0.0020748	844.352581569283	11.11	0.088679	11.11	11.075	11.163	0	462	55	1.01562323939346	0.036265853684099	1.01562323939346	613.498465821653	0	21.9067905635898						560	11	5	NaN	NaN	NaN	4.1855E-09	1	36959	130.81	130.29	2	123470			14639	1429	12307	12660	14639	14639	509	
NAELDPVTTEEQVLDVK	17	Unmodified	_NAELDPVTTEEQVLDVK_			0	0	0	O95140	O95140	O95140	MFN2	Mitofusin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.480928	1898.9473	1.5802	0.0015019	0.57997	0.00055125	2.1601	0.0020532	950.983083794805	14.028	0.11527	14.028	13.966	14.081	0	156	46	1.21966378336455	0.0298021848658476	1.21966378336455	492.058940884755	0	12.023339317896						411	14	4	NaN	NaN	NaN	1.8458E-06	1	29580	65.212	57.637	1	103990			14640	406	12308	12661	14640	14640		
NAENAIEALK	10	Unmodified	_NAENAIEALK_			0	0	0	P16615;O14983	P16615	P16615	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.785296	1071.55604	1.1932	0.00064049	-0.81313	-0.00043647	0.38007	0.00020402	536.785062490415	7.66	0.23064	7.66	7.5979	7.8285	0	699	43	0.85560534332665	0.0285131915088889	0.85560534332665	347.110196643626	0	11.5675054962919						442	25	4	NaN	NaN	NaN	3.7813E-05	1	5993	78.816	48.254	1	184710			14641	730	12309	12662	14641	14641		
NAEPLINLDVNNPDFK	16	Unmodified	_NAEPLINLDVNNPDFK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.959965	1811.90538	2.062	0.0018701	-1.8569	-0.0016842	0.20503	0.00018595	907.457840552259	14.373	0.2128	14.373	14.311	14.524	0	291	124	1.12999890578964	0.0818294839700784	1.12999890578964	456.04353164609	0	33.0246398215882						1190	25	4	NaN	NaN	NaN	7.786E-09	1	27527	91.457	85.429	1	503260			14642	3324	12310	12663	14642	14642		
NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK	34	Unmodified	_NAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1122.82447	3365.45159	3.1839	0.0035749	-0.88112	-0.00098934	2.3028	0.0025856	1123.49201156905	6.853	0.088676	6.853	6.8175	6.9062	0	327	46	1.10599442759226	0.0300366027940016	1.10599442759226	667.179937082098	0	18.1192764288048						265	11	4	NaN	NaN	NaN	0.00023528	1	38585	44.454	44.419	1	45295			14643	955	12311	12664	14643	14643		
NAEVTGTMSQDTEVDMK	17	Unmodified	_NAEVTGTMSQDTEVDMK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.406048	1854.79754	2.3818	0.0022113	-0.47717	-0.00044301	1.9046	0.0017683	928.405956670667	7.456	0.21281	7.456	7.4117	7.6245	0	294	49	1.12800004657306	0.0319971654265232	1.12800004657306	455.156856000607	0	12.9111069283314						618	25	4	NaN	NaN	NaN	8.8029E-14	1	28583	131.06	123.1	1	116060			14644	576	12312	12665	14644	14644		
NAEVTGTMSQDTEVDMK	17	Oxidation (M)	_NAEVTGTM(Oxidation (M))SQDTEVDMK_	NAEVTGTM(1)SQDTEVDMK	NAEVTGTM(54)SQDTEVDM(-54)K	0	1	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.403505	1870.79246	2.1569	0.0020197	-1.1658	-0.0010917	0.99101	0.00092799	936.903917767273	5.3544	0.062069	5.3544	5.3455	5.4076	0	288	22	1.13199748998575	0.0139900901673697	1.13199748998575	456.740866932572	0	5.64475272077647						75	8	2	NaN	NaN	NaN	1.9758E-09	1	28948	78.888	75.383	2	16803			14645	576	12312	12666	14645	14645	149	
NAFACFDEEATGTIQEDYLR	20	Unmodified	_NAFACFDEEATGTIQEDYLR_			0	0	0	P19105;O14950	P19105	P19105	MYL12A;MYL12B	Myosin regulatory light chain 12A;Myosin regulatory light chain 12B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1175.51825	2349.02194	0.96812	0.001138	1.0334	0.0012148	2.0015	0.0023528	1176.0205540058	16.041	0.15962	16.041	15.996	16.156	0	66	58	1.27913350869533	0.0376100012347553	1.27913350869533	515.333455011438	0	15.1522040096186						642	19	4	NaN	NaN	NaN	8.3246E-06	1	36034	59.997	58.149	1	131240			14646	128	12313	12667	14646	14646		
NAFMMLIHADQDR	13	Unmodified	_NAFMMLIHADQDR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.246516	1560.71772	-0.25021	-0.00013042	-1.122	-0.00058483	-1.3722	-0.00071525	521.245978464372	12.91	0.088694	12.91	12.866	12.955	0	768	43	0.808687310729125	0.0286084797705708	0.808687310729125	490.148736593246	0	17.3397183674811						285	11	4	NaN	NaN	NaN	0.0038087	1	20354	16.759	14.458	1	50754			14647	1240	12314	12668	14647	14647		
NAFMMLIHADQDR	13	Unmodified	_NAFMMLIHADQDR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.366135	1560.71772	2.5975	0.0020296	1.2677	0.0009905	3.8652	0.0030201	781.367286828062	12.901	0.2483	12.901	12.822	13.07	0	363	55	1.08195024817156	0.0361209959185984	1.08195024817156	437.185495449301	0	14.5954728726959						344	29	4	NaN	NaN	NaN	0.00042144	1	20356	50.116	40.854	1	81759			14648	1240	12314	12668	14648	14648		
NAGGEEAALALAEGLHCGSALFR	23	Unmodified	_NAGGEEAALALAEGLHCGSALFR_			0	0	0	Q9BU89	Q9BU89	Q9BU89	DOHH	Deoxyhypusine hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.046336	2313.11718	0.33981	0.00026235	0.80186	0.00061908	1.1417	0.00088142	772.3813018563	17.06	0.088667	17.06	17.025	17.114	0	375	22	1.07392668217569	0.0140460810726906	1.07392668217569	649.048089097896	0	8.48901720280799						173	11	4	NaN	NaN	NaN	0.00019604	1	35746	77.478	72.88	1	35433			14649	2742	12315	12669	14649	14649		
NAGNCLSPAVIVGLLK	16	Unmodified	_NAGNCLSPAVIVGLLK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.63963	1624.89706	-0.96948	-0.00052608	0.83033	0.00045057	-0.13915	-7.551E-05	542.640121869019	18.311	0.14186	18.311	18.213	18.355	0	690	16	0.86171403876517	0.0101797454144904	0.86171403876517	522.107226821156	0	6.16784502631663						209	17	3	NaN	NaN	NaN	0.00057553	1	22337	79.889	77.218	1	43765			14650	189	12316	12670	14650	14650		
NAGNCLSPAVIVGLLK	16	Unmodified	_NAGNCLSPAVIVGLLK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.455807	1624.89706	1.5983	0.0013001	-0.5851	-0.00047596	1.0132	0.00082419	813.455628741327	18.302	0.2926	18.302	18.133	18.426	0	372	55	1.07593298845566	0.0361160163121792	1.07593298845566	434.603060228407	0	14.5883910809924						1225	34	5	NaN	NaN	NaN	1.105E-08	1	22338	121.69	114.94	1	579880			14651	189	12316	12670	14651	14651		
NAGNEQDLGIQYK	13	Unmodified	_NAGNEQDLGIQYK_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.352062	1448.68957	1.7112	0.0012412	-1.7581	-0.0012752	-0.046891	-3.4013E-05	725.351500688396	6.5959	0.17735	6.5959	6.5427	6.72	-8.8818E-16	474	40	1.00756305028564	0.0262046696285547	1.00756305028564	407.404480471585	0	10.595763523607						283	21	3	NaN	NaN	NaN	1.2599E-05	1	16939	103.87	95.399	1	81827			14652	959	12317	12671	14652	14652		
NAGVEGSLIVEK	12	Unmodified	_NAGVEGSLIVEK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.33261	1214.65067	1.5643	0.00095162	0.58528	0.00035605	2.1496	0.0013077	608.332997660605	7.589	0.43458	7.589	7.4826	7.9172	0	573	85	0.940896116921038	0.0566559582349253	0.940896116921038	381.140514292778	0	22.950334974357						1802	50	5	NaN	NaN	NaN	3.624E-07	1	9867	151.66	97.227	1	2218900			14653	635	12318	12672	14653	14653		
NAIDDGCVVPGAGAVEVAMAEALIK	25	Unmodified	_NAIDDGCVVPGAGAVEVAMAEALIK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.082058	2469.22435	1.4621	0.0012049	-0.099706	-8.2166E-05	1.3624	0.0011227	824.416505401742	19.969	0.062065	19.969	19.924	19.986	0	318	115	1.11199926528787	0.0761505097379216	1.11199926528787	671.804373007019	0	46.0056468071548						266	8	2	NaN	NaN	NaN	0.0013702	1	36678	65.467	60.869	1	175300			14654	1016	12319	12673	14654	14654		
NAINIEELFQGISR	14	Unmodified	_NAINIEELFQGISR_			0	0	0	Q13636	Q13636	Q13636	RAB31	Ras-related protein Rab-31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.425562	1602.83657	0.7687	0.00061682	-1.0027	-0.00080461	-0.23402	-0.00018779	802.424659502597	18.807	0.070955	18.807	18.781	18.851	0	405	37	1.05384839605172	0.0241138939536367	1.05384839605172	425.731924669751	0	9.74149082792758						212	9	3	NaN	NaN	NaN	3.0363E-07	1	21687	108.24	96.225	1	60178			14655	1698	12320	12674	14655	14655		
NAINTEMYHEIMR	13	Unmodified	_NAINTEMYHEIMR_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.253559	1620.73885	-0.34963	-0.00018924	-1.1504	-0.00062264	-1.5	-0.00081188	541.253246765094	10.019	0.15958	10.019	9.9662	10.126	0	741	31	0.827064408645228	0.0204090624710167	0.827064408645228	501.124092314136	0	12.3659932634798						460	19	5	NaN	NaN	NaN	0.0001696	1	22202	108.4	99.927	1	230820			14656	341	12321	12675	14656	14656		
NAINTEMYHEIMR	13	Unmodified	_NAINTEMYHEIMR_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.3767	1620.73885	2.8515	0.0023136	-0.41765	-0.00033888	2.4338	0.0019747	811.376705496836	10.019	0.097541	10.019	9.975	10.073	0	339	31	1.09798411722691	0.0200340549752125	1.09798411722691	443.519820306523	0	8.09255828313678						246	12	4	NaN	NaN	NaN	2.7132E-07	1	22204	105.94	98.367	1	60962			14657	341	12321	12675	14657	14657		
NAINTEMYHEIMR	13	Oxidation (M)	_NAINTEMYHEIM(Oxidation (M))R_	NAINTEM(0.002)YHEIM(0.998)R	NAINTEM(-26)YHEIM(26)R	0	1	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.374157	1636.73376	2.4684	0.0020225	-1.4908	-0.0012215	0.9776	0.00080102	819.873680264266	7.8374	0.061988	7.8374	7.802	7.864	-8.8818E-16	327	28	1.10599442759226	0.0180219585997581	1.10599442759226	446.71850942867	0	7.27918901019734						93	8	2	NaN	NaN	NaN	0.0039327	1	22681	52.837	45.28	2	18019			14658	341	12321	12676	14658	14658	55	
NALANPLYCPDYR	13	Unmodified	_NALANPLYCPDYR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.872108	1565.72966	2.6847	0.0021045	3.4376	0.0026947	6.1224	0.0047992	784.376925486417	10.755	0.1951	10.755	10.676	10.871	0	360	28	1.08395544855938	0.018041831774515	1.08395544855938	437.983402481766	0	7.28998860433592						532	23	5	NaN	NaN	NaN	0.036584	1	20521	34.193	26.635	1	349010			14659	811	12322	12677	14659	14659		
NALDLLLPK	9	Unmodified	_NALDLLLPK_			0	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.808042	995.601532	-0.39043	-0.00019475	-1.538	-0.00076716	-1.9284	-0.00096191	498.807332796352	15.402	0.275	15.402	15.251	15.526	0	681	31	0.867820189810857	0.0203524260142245	0.867820189810857	352.406297271268	0	8.26475711947143						443	32	3	NaN	NaN	NaN	0.01291	1	4189	54.436	37.979	1	158460			14660	913	12323	12678	14660	14660		
NALESYAFNMK	11	Unmodified	_NALESYAFNMK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.305538	1286.59652	1.6235	0.001046	1.0169	0.00065522	2.6404	0.0017012	644.306559091556	11.412	0.28386	11.412	11.314	11.598	0	513	55	0.981336640919867	0.0363612334890161	0.981336640919867	397.272420446819	0	14.7200406428042						1068	33	5	NaN	NaN	NaN	2.9566E-05	1	11954	97.277	82.515	1	793320			14661	618	12324	12679	14661	14661		
NALLQLTDSQIADVAR	16	Unmodified	_NALLQLTDSQIADVAR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.467958	1726.92136	2.2369	0.0019337	1.5366	0.0013283	3.7735	0.003262	864.471024326674	15.198	0.33693	15.198	15.101	15.437	0	291	118	1.12999890578964	0.0778699049216069	1.12999890578964	456.213949374062	0	31.4383816476742						717	39	4	NaN	NaN	NaN	1.7946E-06	1	25246	115.35	89.734	1	390110			14662	350	12325	12680	14662	14662		
NALNIGMVEEVLQSSDETK	19	Unmodified	_NALNIGMVEEVLQSSDETK_			0	0	0	Q9NTX5	Q9NTX5	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.00953	2076.0045	0.79782	0.00082895	-0.019585	-2.0349E-05	0.77824	0.0008086	1039.00987725388	18.018	0.11529	18.018	17.974	18.089	0	177	49	1.2057522832638	0.0318129977486037	1.2057522832638	486.145459826487	0	12.8266349843355						393	14	4	NaN	NaN	NaN	5.9793E-09	1	32958	81.578	75.373	1	78230			14663	3046	12326	12681	14663	14663		
NALQQENHIIDGVK	14	Unmodified	_NALQQENHIIDGVK_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.945999	1577.81617	0.19046	0.00010036	-0.49309	-0.00025983	-0.30263	-0.00015947	526.945642288669	7.3053	0.16848	7.3053	7.261	7.4294	0	732	37	0.833184998970724	0.0244772608396998	0.833184998970724	504.948818222307	0	14.8343572551045						482	20	5	NaN	NaN	NaN	0.00013948	1	20913	86.243	70.363	1	265030			14664	2831	12327	12682	14664	14664		
NALQQENHIIDGVK	14	Unmodified	_NALQQENHIIDGVK_			0	0	0	Q9GZT3	Q9GZT3	Q9GZT3	SLIRP	SRA stem-loop-interacting RNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.915361	1577.81617	3.0179	0.0023839	-1.7865	-0.0014112	1.2314	0.00097273	789.91382159413	7.3053	0.22168	7.3053	7.261	7.4826	0	303	85	1.12200181823275	0.0560259150282008	1.12200181823275	453.326007292494	0	22.6363308436048						839	26	5	NaN	NaN	NaN	7.1358E-17	1	20914	158.59	139.27	1	428180			14665	2831	12327	12682	14665	14665		
NALVSHLDGTTPVCEDIGR	19	Unmodified	_NALVSHLDGTTPVCEDIGR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.5022	2052.98985	2.1586	0.002218	-1.4703	-0.0015107	0.68831	0.00070724	1028.00223477026	10.081	0.070949	10.081	10.046	10.117	0	159	61	1.21767724410157	0.0397389804698309	1.21767724410157	490.990038503032	0	16.0234936190743						373	9	4	NaN	NaN	NaN	0.0017865	1	32579	35.182	28.978	1	80920			14666	927	12328	12683	14666	14666		
NALVSHLDGTTPVCEDIGR	19	Unmodified	_NALVSHLDGTTPVCEDIGR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.337227	2052.98985	0.79562	0.00054527	0.37436	0.00025656	1.17	0.00080183	685.671978009641	10.081	0.15073	10.081	10.037	10.188	0	660	82	0.882057989648486	0.0548639517141246	0.882057989648486	533.491435821769	0	33.18313389632						918	18	5	NaN	NaN	NaN	1.8848E-07	1	32580	122.13	113.76	1	378040			14667	927	12328	12683	14667	14667		
NAPAIIFIDELDAIAPK	17	Unmodified	_NAPAIIFIDELDAIAPK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.001102	1809.98765	1.1856	0.0010742	1.0698	0.00096928	2.2555	0.0020435	906.503380193216	20.075	0.08866	20.075	20.031	20.119	0	201	217	1.18983705239708	0.143316627602809	1.18983705239708	480.196789204931	0	57.840007819475						1183	11	4	NaN	NaN	NaN	1.9213E-06	1	27485	97.084	93.348	1	533350			14668	1265	12329	12684	14668	14668		
NAPCILFIDEIDAVGR	16	Unmodified	_NAPCILFIDEIDAVGR_			0	0	0	Q9Y4W6	Q9Y4W6	Q9Y4W6	AFG3L2	AFG3-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.958911	1801.90327	1.131	0.0010201	1.1874	0.001071	2.3184	0.0020911	901.957673563668	18.656	0.079789	18.656	18.621	18.701	0	318	52	1.11199926528787	0.0340040095006244	1.11199926528787	448.798170755973	0	13.7238735120012						237	10	3	NaN	NaN	NaN	0.0044645	1	27261	54.309	50.573	1	63965			14669	3416	12330	12685	14669	14669		
NAQAIEDMVGYAQETQHEK	19	Unmodified	_NAQAIEDMVGYAQETQHEK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.332142	2160.9746	1.6798	0.0012117	-0.043017	-3.1029E-05	1.6367	0.0011806	721.666453946188	11.296	0.15079	11.296	11.243	11.394	0	495	49	0.993446994398923	0.0322942844341361	0.993446994398923	600.6608304731	0	19.5258648092032						620	18	5	NaN	NaN	NaN	3.1143E-15	1	34183	214.32	202.4	1	273460			14670	2641	12331	12686	14670	14670		
NAQEALQAIETK	12	Unmodified	_NAQEALQAIETK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.346249	1314.67794	1.2611	0.00083027	2.9989	0.0019743	4.26	0.0028046	658.346084077264	8.6891	0.25738	8.6891	8.5914	8.8487	0	537	73	0.965173861991602	0.0485084964826091	0.965173861991602	390.640607879127	0	19.6331348159051						596	30	3	NaN	NaN	NaN	0.00026112	1	12801	99.174	88.924	1	164110			14671	209	12332	12687	14671	14671		
NAQLAQYNFILVVGEK	16	Unmodified	_NAQLAQYNFILVVGEK_			0	0	0	P26639;A2RTX5	P26639	P26639	TARS;TARSL2	Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.991069	1805.96758	0.97431	0.00088076	-3.0496	-0.0027568	-2.0753	-0.001876	903.987527152427	16.377	0.21282	16.377	16.271	16.484	0	252	49	1.15595906938629	0.0319312080985819	1.15595906938629	466.532156824582	0	12.8870785988598						591	25	4	NaN	NaN	NaN	1.0689E-08	1	27384	88.42	74.642	1	159650			14672	857	12333	12688	14672	14672		
NAQLNIELEAAHH	13	Unmodified	_NAQLNIELEAAHH_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.24779	1458.72154	-1.2182	-0.00059356	0.46141	0.00022482	-0.75678	-0.00036874	487.24853470126	7.997	0.27502	7.997	7.9261	8.2011	0	792	31	0.792332785124922	0.0204516951022167	0.792332785124922	480.530961537256	0	12.4034659388548						280	32	4	NaN	NaN	NaN	1.2206E-05	1	17231	119.07	116.59	1	74132			14673	1067	12334	12689	14673	14673		
NASCYFDIEWR	11	Unmodified	_NASCYFDIEWR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.816801	1459.61905	1.254	0.00091646	0.68408	0.00049994	1.9381	0.0014164	730.817298224764	14.311	0.17731	14.311	14.258	14.435	-1.7764E-15	480	31	1.00353128488872	0.0201644018514301	1.00353128488872	405.745499700033	0	8.15282535637948						432	21	4	NaN	NaN	NaN	5.7206E-05	1	17241	113.46	105.9	1	169330			14674	1898	12335	12690	14674	14674		
NASMNTQHGTATEVAVETTTPK	22	Unmodified	_NASMNTQHGTATEVAVETTTPK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.365623	2287.07504	2.7441	0.0020948	-0.6736	-0.0005142	2.0705	0.0015806	763.699964172242	5.6292	0.097575	5.6292	5.5849	5.6825	0	402	25	1.05585747106793	0.0160714927508061	1.05585747106793	638.170979755725	0	9.71377345518556						230	12	4	NaN	NaN	NaN	0.0040029	1	35536	59.625	55.07	1	48212			14675	3238	12336	12691	14675	14675		
NASNPLAHYDTTADEILQQCDGK	23	Unmodified	_NASNPLAHYDTTADEILQQCDGK_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.390608	2560.14999	1.5509	0.0013251	-1.0664	-0.00091114	0.48447	0.00041393	854.723963339378	12.706	0.15964	12.706	12.609	12.768	0	534	46	0.967195187796614	0.0303157001501234	0.967195187796614	584.206159793704	0	18.3113181182258						723	19	5	NaN	NaN	NaN	4.2544E-13	1	37064	90.806	89.182	1	198300			14676	970	12337	12692	14676	14676		
NASTFEDVTQVSSAYQK	17	Unmodified	_NASTFEDVTQVSSAYQK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.630405	1873.86939	0.4732	0.00029605	0.74	0.00046297	1.2132	0.00075901	625.630851307937	10.25	0.15075	10.25	10.197	10.347	0	642	43	0.894250814548268	0.0284341478220305	0.894250814548268	541.212777668674	0	17.2087336942226						477	18	5	NaN	NaN	NaN	1.0459E-06	1	29017	135.21	131.47	1	188340			14677	1742	12338	12693	14677	14677		
NASTFEDVTQVSSAYQK	17	Unmodified	_NASTFEDVTQVSSAYQK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.94197	1873.86939	2.1847	0.0020491	-0.26531	-0.00024885	1.9194	0.0018003	937.941788529744	10.241	0.19507	10.241	10.179	10.374	0	279	52	1.13799159301878	0.0339619226468326	1.13799159301878	459.153828182989	0	13.7028664283729						697	23	5	NaN	NaN	NaN	1.4659E-44	1	29018	274.44	263.66	1	297450			14678	1742	12338	12693	14678	14678		
NATNVEQAFMTMAAEIK	17	Unmodified	_NATNVEQAFMTMAAEIK_			0	0	0	Q9H0U4;Q92928	Q9H0U4	Q9H0U4	RAB1B;RAB1C	Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.634216	1867.88082	-0.67565	-0.00042136	0.93066	0.00058039	0.25501	0.00015903	623.634963156264	19.117	0.062059	19.117	19.082	19.144	0	612	22	0.914549654013882	0.0141983560762999	0.914549654013882	553.510938132377	0	8.59324079041312						117	8	4	NaN	NaN	NaN	0.016067	1	28877	50.641	46.395	1	25111			14679	2850	12339	12694	14679	14679		
NATNVEQSFMTMAAEIK	17	Unmodified	_NATNVEQSFMTMAAEIK_			0	0	0	P62820	P62820	P62820	RAB1A	Ras-related protein Rab-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.965854	1883.87573	-0.38506	-0.00024219	-0.089178	-5.609E-05	-0.47423	-0.00029828	629.299938688037	17.424	0.10638	17.424	17.371	17.477	0	618	25	0.910492137470517	0.0162323175227004	0.910492137470517	551.020763588549	0	9.8236367213658						191	13	4	NaN	NaN	NaN	0.0025726	1	29228	77.157	41.708	1	46369			14680	1398	12340	12695	14680	14680		
NAVEEYVYDFR	11	Unmodified	_NAVEEYVYDFR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.825149	1403.63574	1.1758	0.00082636	0.83502	0.00058687	2.0108	0.0014132	702.825458539602	13.061	0.13299	13.061	13.008	13.141	0	459	70	1.01763759082241	0.0463109185444219	1.01763759082241	411.602981058426	0	18.7313364800462						614	16	4	NaN	NaN	NaN	4.7472E-05	1	15568	111.61	101.52	1	211320			14681	450	12341	12696	14681	14681		
NAVEEYVYEFR	11	Unmodified	_NAVEEYVYEFR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.832974	1417.6514	1.5873	0.0011267	1.544	0.001096	3.1312	0.0022227	709.833783533802	13.238	0.17734	13.238	13.176	13.354	0	480	109	1.00353128488872	0.0725217722598777	1.00353128488872	405.858261255358	0	29.3299878496711						1287	21	5	NaN	NaN	NaN	1.4326E-05	1	16000	116.13	74.057	1	462700			14682	2415	12342	12697	14682	14682		
NAVIPQYQALFSMDK	15	Unmodified	_NAVIPQYQALFSMDK_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.937447	1723.86034	1.5247	0.0013157	1.7362	0.0014982	3.2608	0.0028139	862.939736179905	15.863	0.097536	15.863	15.828	15.925	1.7764E-15	294	55	1.12800004657306	0.0359918600529883	1.12800004657306	455.413389279935	0	14.5311828869316						403	12	4	NaN	NaN	NaN	0.061952	1	25167	35.45	29.073	1	87343			14683	379	12343	12698	14683	14683		
NAVITVPAYFNDSQR	15	Unmodified	_NAVITVPAYFNDSQR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.928468	1693.84238	3.5277	0.0029912	-1.0862	-0.00092098	2.4416	0.0020703	847.927936915111	12.893	0.34586	12.893	12.724	13.07	0	345	67	1.09397730668811	0.044081013383825	1.09397730668811	441.739650631437	0	17.799575304355						1675	40	5	NaN	NaN	NaN	0.00023456	1	24313	90.156	78.674	1	1387600			14684	1007	12344	12699	14684	14684		
NAVSVHSNLNSEAVMK	16	Unmodified	_NAVSVHSNLNSEAVMK_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.425236	1698.83592	2.7994	0.0023807	-2.1293	-0.0018108	0.67012	0.00056989	850.42350454119	6.0461	0.079806	6.0461	6.0195	6.0993	0	321	25	1.10999792833052	0.0160117991526911	1.10999792833052	448.197966631749	0	6.46528758224423						145	10	3	NaN	NaN	NaN	0.0022623	1	24463	44.82	38.443	1	33760			14685	1974	12345	12700	14685	14685		
NAVTQFVSSMSASADVLALAK	21	Unmodified	_NAVTQFVSSMSASADVLALAK_			0	0	0	P47985;P0C7P4	P47985	P47985	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.54608	2109.0776	0.93318	0.00098502	-1.7055	-0.0018003	-0.77234	-0.00081524	1055.54539600599	20.022	0.044326	20.022	20.004	20.049	0	126	43	1.23951419873743	0.0277715403229193	1.23951419873743	499.705807562888	0	11.1959992055479						147	6	5	NaN	NaN	NaN	3.2536E-06	1	33460	94.63	92.389	1	47690			14686	1103	12346	12701	14686	14686		
NAVTQFVSSMSASADVLALAK	21	Oxidation (M)	_NAVTQFVSSM(Oxidation (M))SASADVLALAK_	NAVTQFVSSM(1)SASADVLALAK	NAVTQFVSSM(52)SASADVLALAK	0	1	0	P47985;P0C7P4	P47985	P47985	UQCRFS1;UQCRFS1P1	Cytochrome b-c1 complex subunit Rieske, mitochondrial;Cytochrome b-c1 complex subunit 11;Putative cytochrome b-c1 complex subunit Rieske-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.54354	2125.07252	-0.0047803	-5.084E-06	-2.9489	-0.0031362	-2.9536	-0.0031413	1064.04277647382	16.679	0.21284	16.679	16.519	16.732	0	120	43	1.2434810169581	0.0277753476234135	1.2434810169581	501.280336586746	0	11.1969828373727						272	25	2	NaN	NaN	NaN	0.0026313	1	33690	51.577	42.421	1	68602			14687	1103	12346	12702	14687	14687	393	
NAWADNANACAK	12	Unmodified	_NAWADNANACAK_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.285668	1304.55678	2.4166	0.0015787	-0.8468	-0.0005532	1.5698	0.0010255	653.285805963597	3.9977	0.097536	3.9977	3.9711	4.0686	0	561	28	0.948993180460448	0.0182120890547127	0.948993180460448	384.122709087896	0	7.37168309518518						165	12	3	NaN	NaN	NaN	0.06657	1	12484	22.898	19.61	1	31537			14688	3043	12347	12703	14688	14688		
NAYAVLYDIILK	12	Unmodified	_NAYAVLYDIILK_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.397753	1394.78095	0.090539	6.3233E-05	-0.040201	-2.8077E-05	0.050338	3.5156E-05	698.397600335481	19.126	0.097538	19.126	19.091	19.188	0	477	55	1.0055473068722	0.036265853684099	1.0055473068722	406.738026885199	0	14.6693265149906						410	12	5	NaN	NaN	NaN	0.00632	1	15293	60.547	50.459	1	116930			14689	1560	12348	12704	14689	14689		
NCASPSSAGQLILPECMK	18	Unmodified	_NCASPSSAGQLILPECMK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.957728	1961.9009	0.66709	0.00065505	3.2314	0.0031731	3.8985	0.0038282	982.462426509039	11.926	0.088702	11.926	11.873	11.961	0	195	40	1.19381749893585	0.025878237088949	1.19381749893585	481.519436685749	0	10.437838410476						179	11	4	NaN	NaN	NaN	0.0088495	1	30955	52.662	45.455	1	42208			14690	1247	12349	12705	14690	14690		
NCAVEFNFGQR	11	Unmodified	_NCAVEFNFGQR_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.303861	1340.59317	1.3366	0.00089726	0.96893	0.00065044	2.3055	0.0015477	671.304418284297	10.152	0.088687	10.152	10.09	10.179	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.197832667929	0	8.17769188693376						144	11	3	NaN	NaN	NaN	0.042991	1	13599	40.386	34.52	1	35123			14691	2746	12350	12706	14691	14691		
NCDYQQEADNSCIYVNK	17	Unmodified	_NCDYQQEADNSCIYVNK_			0	0	0	P36954	P36954	P36954	POLR2I	DNA-directed RNA polymerase II subunit RPB9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.93604	2119.85752	1.6701	0.0017719	-0.80709	-0.00085627	0.863	0.00091558	1061.43649207093	7.1545	0.035442	7.1545	7.1457	7.1811	0	222	46	1.17589687683038	0.0298800183306296	1.17589687683038	474.042934001905	0	12.0456239289131						103	5	2	NaN	NaN	NaN	2.5215E-07	1	33609	96.27	95.651	1	19419			14692	995	12351	12707	14692	14692		
NCECLSCIDCGK	12	Unmodified	_NCECLSCIDCGK_			0	0	0	Q9NX58	Q9NX58	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.288379	1514.5622	1.8902	0.0014333	0.81961	0.0006215	2.7098	0.0020548	758.288177610504	5.9219	0.11534	5.9219	5.8864	6.0017	0	453	34	1.02166545906632	0.0221486894009117	1.02166545906632	412.936730949193	0	8.95205697213243						300	14	4	NaN	NaN	NaN	0.01721	1	18946	50.116	49.793	1	81709			14693	3099	12352	12708	14693	14693		
NCEPMIGLVPILK	13	Unmodified	_NCEPMIGLVPILK_			0	0	0	Q9Y2R9	Q9Y2R9	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.404198	1482.79384	0.19	0.00014106	-0.87458	-0.00064929	-0.68457	-0.00050823	742.402914733781	16.936	0.15076	16.936	16.856	17.007	0	429	49	1.03776581230406	0.0321562992894993	1.03776581230406	419.525550763734	0	12.9994542217566						310	18	2	NaN	NaN	NaN	0.00019355	1	18001	90.306	87.204	1	133600			14694	3350	12353	12709	14694	14694		
NCETDTLINYMAK	13	Unmodified	_NCETDTLINYMAK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.855266	1571.69598	1.4469	0.0011385	2.8104	0.0022114	4.2573	0.0033499	786.85750323249	12.219	0.079817	12.219	12.183	12.263	0	399	28	1.0578662689527	0.0180766890154731	1.0578662689527	427.427577783268	0	7.30383000856477						225	10	4	NaN	NaN	NaN	0.00013322	1	20699	90.689	85.538	1	76274			14695	1247	12354	12710	14695	14695		
NCFASVFEK	9	Unmodified	_NCFASVFEK_			0	0	0	O15144	O15144	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.255317	1100.49608	0.47945	0.0002643	1.8011	0.00099288	2.2806	0.0012572	551.256252567101	10.055	0.15073	10.055	10.002	10.152	0	645	37	0.892219381832517	0.0243822699655701	0.892219381832517	361.843290370758	0	9.88833124531482						343	18	3	NaN	NaN	NaN	0.023553	1	6724	56.378	39.831	1	93879			14696	148	12355	12711	14696	14696		
NCGCLGASPNLEQLQEENLK	20	Unmodified	_NCGCLGASPNLEQLQEENLK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1137.52809	2273.04163	1.0717	0.0012191	2.2189	0.0025241	3.2907	0.0037432	1138.03165983402	11.811	0.15963	11.811	11.704	11.864	0	114	67	1.24744674793813	0.0436350250221456	1.24744674793813	502.666392761279	0	17.583003572845						672	19	4	NaN	NaN	NaN	2.8338E-05	1	35394	72.031	71.556	1	124250			14697	1250	12356	12712	14697	14697		
NCGQMSEIEAK	11	Unmodified	_NCGQMSEIEAK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.776287	1265.53802	2.1924	0.0013895	0.59764	0.00037877	2.7901	0.0017683	633.776498380844	4.2726	0.062059	4.2726	4.246	4.3081	0	546	25	0.959108205975751	0.0161762030929075	0.959108205975751	388.34234972369	0	6.54973513892145						98	8	3	NaN	NaN	NaN	0.022696	1	11366	48.785	41.635	1	29787			14698	3406	12357	12713	14698	14698		
NCHLNENIEK	10	Unmodified	_NCHLNENIEK_			0	0	0	Q13907;Q9BXS1	Q13907	Q13907	IDI1;IDI2	Isopentenyl-diphosphate Delta-isomerase 1;Isopentenyl-diphosphate delta-isomerase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.795869	1269.57718	2.0891	0.0013282	-1.1049	-0.00070251	0.98413	0.00062571	635.795737994563	2.8183	0.10641	2.8183	2.7917	2.8981	0	588	28	0.93076847747433	0.0182373300269247	0.93076847747433	376.854674766482	0	7.38403076837687						167	13	3	NaN	NaN	NaN	0.00072034	1	11493	96.957	64.816	1	33399			14699	1710	12358	12714	14699	14699		
NCIDITGVR	9	Unmodified	_NCIDITGVR_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.266216	1046.51788	0.82417	0.00043208	-1.0115	-0.00053032	-0.18737	-9.8232E-05	524.26607683403	7.2166	0.25715	7.2166	7.128	7.3851	0	693	73	0.85967808974117	0.0488390689254471	0.85967808974117	348.868345756472	0	19.8195177795411						680	30	5	NaN	NaN	NaN	0.0066121	1	5391	65.156	23.081	1	345420			14700	1607	12359	12715	14700	14700		
NCIGDFLK	8	Unmodified	_NCIGDFLK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.739302	965.464052	-0.050176	-2.4272E-05	-0.73186	-0.00035403	-0.78203	-0.0003783	483.738754336327	10.826	0.19509	10.826	10.755	10.95	0	723	37	0.839303037468863	0.0244704573832687	0.839303037468863	340.970947821525	0	9.94124252518139						345	23	2	NaN	NaN	NaN	0.013592	1	3547	49.325	42.563	1	146290			14701	2175	12360	12716	14701	14701		
NCIVLIDSTPYR	12	Unmodified	_NCIVLIDSTPYR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.871576	1449.7286	1.409	0.0010228	0.56001	0.0004065	1.9691	0.0014293	725.872356854221	11.678	0.23048	11.678	11.58	11.811	0	456	124	1.01965166402748	0.0824632244559589	1.01965166402748	412.289663642846	0	33.343480203388						1449	27	5	NaN	NaN	NaN	1.9797E-23	1	16979	191.67	171.48	1	1241700			14702	1370	12361	12717	14702	14702		
NCLALADDK	9	Unmodified	_NCLALADDK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.244949	1018.47534	1.1915	0.00060798	3.621	0.0018476	4.8125	0.0024556	510.246739924171	5.1681	0.33699	5.1681	5.0795	5.4164	0	669	58	0.875957769340875	0.0386240232169095	0.875957769340875	355.60189574766	0	15.6797237927001						662	39	4	NaN	NaN	NaN	0.034151	1	4698	40.502	3.9327	1	217180			14703	324	12362	12718	14703	14703		
NCLTNFHGMDLTR	13	Unmodified	_NCLTNFHGMDLTR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.909903	1577.70788	-0.82766	-0.0004361	-0.27969	-0.00014737	-1.1073	-0.00058347	526.909928407089	9.975	0.30147	9.975	9.913	10.214	0	783	154	0.798467866007927	0.104021437391833	0.798467866007927	483.908910435239	0	63.0418612609384						1825	35	6	NaN	NaN	NaN	0.00023614	1	20894	124.46	105.13	1	2021600			14704	1338	12363	12719	14704	14704		
NCLTNFHGMDLTR	13	Unmodified	_NCLTNFHGMDLTR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.861217	1577.70788	2.2539	0.0017803	0.39009	0.00030812	2.644	0.0020884	789.861442620866	9.975	0.18619	9.975	9.9307	10.117	0	378	52	1.07192009927972	0.0341213287703452	1.07192009927972	433.091579542011	0	13.786158299626						417	22	2	NaN	NaN	NaN	2.9465E-05	1	20895	97.594	88.332	1	360370			14705	1338	12363	12719	14705	14705		
NCLTNFHGMDLTR	13	Oxidation (M)	_NCLTNFHGM(Oxidation (M))DLTR_	NCLTNFHGM(1)DLTR	NCLTNFHGM(60)DLTR	0	1	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.241542	1593.7028	-0.8231	-0.00043809	1.7974	0.00095663	0.97426	0.00051854	532.242105117764	7.0836	0.14193	7.0836	7.0392	7.1811	0	756	37	0.816857749704129	0.0245045030583653	0.816857749704129	495.01085307945	0	14.8495805635718						346	17	5	NaN	NaN	NaN	0.00038906	1	21379	60	52.86	1	135430			14706	1338	12363	12720	14706	14706	480	
NCMTDLLAK	9	Unmodified	_NCMTDLLAK_			0	0	0	Q00765	Q00765	Q00765	REEP5	Receptor expression-enhancing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.257002	1064.49945	1.1354	0.00060545	-0.58656	-0.00031279	0.54881	0.00029266	533.257058835693	10.135	0.20394	10.135	10.073	10.277	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	369.408271688864	0	9.87875571526752						509	24	4	NaN	NaN	NaN	0.0027894	1	5824	91.783	86.876	1	250790			14707	1507	12364	12721	14707	14707		
NCSETQYESK	10	Unmodified	_NCSETQYESK_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.256242	1244.49793	0.97251	0.00060612	-0.17796	-0.00011092	0.79455	0.00049521	623.256386987954	1.9403	0.23063	1.9403	1.9137	2.1444	0	624	19	0.906433495720521	0.0121776140547661	0.906433495720521	367.081362070564	0	4.93160852406481						168	27	2	NaN	NaN	NaN	6.9471E-06	1	10752	124.81	116.62	1	29902			14708	1361	12365	12722	14708	14708		
NCSSFLIK	8	Unmodified	_NCSSFLIK_			0	0	0	P46779	P46779	P46779	RPL28	60S ribosomal protein L28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.747127	967.479702	0.25059	0.00012147	-0.53041	-0.00025712	-0.27982	-0.00013564	484.747324409422	7.456	0.36359	7.456	7.3762	7.7398	0	720	67	0.841341816837976	0.0448687594745818	0.841341816837976	341.789212156814	0	18.2276188397566						1036	42	5	NaN	NaN	NaN	0.053079	1	3577	41.025	27.377	1	637300			14709	1088	12366	12723	14709	14709		
NCTIVSPDAGGAK	13	Unmodified	_NCTIVSPDAGGAK_			0	0	0	P60891	P60891	P60891	PRPS1	Ribose-phosphate pyrophosphokinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.311351	1288.60815	2.4662	0.0015914	-1.5937	-0.0010284	0.87248	0.00056302	645.310743357527	4.5031	0.16846	4.5031	4.4322	4.6007	0	588	37	0.93076847747433	0.0243147574808095	0.93076847747433	376.794781135591	0	9.84312849550628						449	20	4	NaN	NaN	NaN	0.00036296	1	12016	78.043	65.976	1	137010			14710	1313	12367	12724	14710	14710		
NCTVYCGGIASGLTDQLMR	19	Unmodified	_NCTVYCGGIASGLTDQLMR_			0	0	0	Q01085	Q01085	Q01085	TIAL1	Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1058.48464	2114.95473	1.0804	0.0011436	0.82872	0.00087719	1.9091	0.0020208	1058.98757624881	14.719	0.07093	14.719	14.684	14.755	1.7764E-15	189	25	1.1977968526266	0.015915230866729	1.1977968526266	482.878819427125	0	6.41605283482232						175	9	4	NaN	NaN	NaN	4.3581E-07	1	33535	85.742	80.126	1	37601			14711	1512	12368	12725	14711	14711		
NCWQNYLDFHR	11	Unmodified	_NCWQNYLDFHR_			0	0	0	P14854	P14854	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.229853	1551.66773	-2.2684	-0.0011755	0.70463	0.00036516	-1.5637	-0.00081037	518.230240941923	12.032	0.11529	12.032	11.979	12.094	0	789	28	0.794378096728713	0.0184052442534667	0.794378096728713	481.500516794299	0	11.1560661809083						308	14	4	NaN	NaN	NaN	0.00026097	1	20105	64.064	53.814	1	107450			14712	703	12369	12726	14712	14712		
NDANPETHAFVTSPEIVTALAIAGTLK	27	Unmodified	_NDANPETHAFVTSPEIVTALAIAGTLK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	927.487018	2779.43922	0.86301	0.00080043	0.17885	0.00016589	1.0419	0.00096632	927.821266571263	19.561	0.079814	19.561	19.508	19.587	0	426	37	1.03977710643793	0.0241338680851122	1.03977710643793	627.779540389132	0	14.5711504133679						153	10	2	NaN	NaN	NaN	0.00073583	1	37839	26.724	26.078	1	38912			14713	2674	12370	12727	14713	14713		
NDECVLEDNSQR	12	Unmodified	_NDECVLEDNSQR_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.812444	1477.61033	1.5144	0.0011204	2.1033	0.0015561	3.6177	0.0026764	739.813400033569	4.6095	0.070938	4.6095	4.5741	4.645	0	501	13	0.98941132619024	0.00807245254733857	0.98941132619024	399.990805595025	0	3.26346253784118						47	9	2	NaN	NaN	NaN	0.059095	1	17805	42.061	36.195	1	8213.9			14714	3311	12371	12728	14714	14714		
NDFSIWSILR	10	Unmodified	_NDFSIWSILR_			0	0	0	Q9BXW6	Q9BXW6	Q9BXW6	OSBPL1A	Oxysterol-binding protein-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.830037	1249.64552	-0.90563	-0.00056677	1.8052	0.0011297	0.89956	0.00056297	626.332932711897	19.153	0.079781	19.153	19.1	19.179	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	370.351441694931	0	5.75049214620776						71	10	2	NaN	NaN	NaN	0.05849	1	10916	14.455	12.953	1	11508			14715	2789	12372	12729	14715	14715		
NDFTEEEEAQVR	12	Unmodified	_NDFTEEEEAQVR_			0	0	0	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.823335	1465.63212	1.8141	0.0013312	0.89182	0.00065444	2.7059	0.0019856	733.824018783418	6.5427	0.32807	6.5427	6.4806	6.8087	0	498	61	0.991429299781895	0.0403567011787407	0.991429299781895	400.83700909818	0	16.3163015266082						1069	38	5	NaN	NaN	NaN	2.6563E-23	1	17432	203.52	187.64	1	920980			14716	1431	12373	12730	14716	14716		
NDGAAILAAVSSIAQK	16	Unmodified	_NDGAAILAAVSSIAQK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.920112	1527.82567	0.82002	0.00062725	1.0676	0.00081666	1.8877	0.0014439	764.921057359515	16.874	0.13305	16.874	16.812	16.945	0	273	55	1.14198628764525	0.0359671056362876	1.14198628764525	461.531710815394	0	14.5360412616009						325	16	3	NaN	NaN	NaN	3.1787E-06	1	19365	98.865	94.338	1	81267			14717	877	12374	12731	14717	14717		
NDGVLLLQALTR	12	Unmodified	_NDGVLLLQALTR_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.882801	1311.75105	-0.043449	-2.8541E-05	-2.4229	-0.0015915	-2.4663	-0.0016201	656.881494794238	16.874	0.17737	16.874	16.812	16.989	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	393.103722500695	0	9.81407456635361						444	21	4	NaN	NaN	NaN	4.3806E-05	1	12716	128.97	109.65	1	207260			14718	280	12375	12732	14718	14718		
NDHQEDFWK	9	Unmodified	_NDHQEDFWK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.762352	1217.51015	1.7863	0.0010892	2.0647	0.001259	3.851	0.0023482	610.264692819436	5.6736	0.19513	5.6736	5.6115	5.8066	0	606	34	0.918606045818476	0.0223055201987317	0.918606045818476	372.101372564203	0	9.03533644208864						413	23	5	NaN	NaN	NaN	0.0098339	1	9939	74.269	68.521	1	129620			14719	2892	12376	12733	14719	14719		
NDIASHPPVEGSYAPR	16	Unmodified	_NDIASHPPVEGSYAPR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.612909	1708.8169	0.52595	0.00030011	-0.45796	-0.00026132	0.067985	3.8793E-05	570.613300258749	5.9396	0.16853	5.9396	5.8155	5.984	0	693	58	0.85967808974117	0.0386937946002025	0.85967808974117	520.657631722815	0	23.434608488133						385	20	4	NaN	NaN	NaN	5.8864E-05	1	24718	73.502	60.327	1	76016			14720	2108	12377	12734	14720	14720		
NDIASHPPVEGSYAPR	16	Unmodified	_NDIASHPPVEGSYAPR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.415725	1708.8169	3.1347	0.0026815	-2.7514	-0.0023536	0.38332	0.0003279	856.41612114809	5.9396	0.29267	5.9396	5.8066	6.0993	0	357	121	1.08596037261705	0.0801694913941315	1.08596037261705	438.471293628739	0	32.3695242363498						2510	34	6	NaN	NaN	NaN	5.4628E-05	1	24719	102.26	97.431	1	629350			14721	2108	12377	12734	14721	14721		
NDIHLDADDPNSADK	15	Unmodified	_NDIHLDADDPNSADK_			0	0	0	Q99590	Q99590	Q99590	SCAF11	Protein SCAF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.363355	1638.71216	2.2225	0.0018233	-0.35931	-0.00029476	1.8632	0.0015285	820.363853463734	4.8844	0.053211	4.8844	4.8667	4.9199	0	417	34	1.04580932352505	0.0221150800336967	1.04580932352505	422.405061052619	0	8.93233739811217						61	7	2	NaN	NaN	NaN	0.015651	1	22717	17.271	16.389	1	10926			14722	2654	12378	12735	14722	14722		
NDITAWQECVNNSMAQLEHQAVR	23	Unmodified	_NDITAWQECVNNSMAQLEHQAVR_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	905.418504	2713.23368	0.84718	0.00076706	0.65156	0.00058993	1.4987	0.001357	905.75361832426	17.637	0.053194	17.637	17.61	17.663	0	414	49	1.04781950764076	0.0321651748456302	1.04781950764076	632.712091193052	0	19.4225197104711						210	7	4	NaN	NaN	NaN	0.00069187	1	37642	45.826	39.255	1	29782			14723	370	12379	12736	14723	14723		
NDIVNMLVGNK	11	Unmodified	_NDIVNMLVGNK_			0	0	0	Q9NP72	Q9NP72	Q9NP72	RAB18	Ras-related protein Rab-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.821355	1215.62816	-0.092683	-5.6427E-05	-2.3893	-0.0014546	-2.482	-0.0015111	608.82065802321	14.072	0.13301	14.072	14.028	14.161	0	621	31	0.908462957275599	0.0202960249854377	0.908462957275599	367.999098005249	0	8.22148974585787						347	16	4	NaN	NaN	NaN	2.4865E-07	1	9896	150.53	118.58	1	106370			14724	2976	12380	12737	14724	14724		
NDLAVVDVR	9	Unmodified	_NDLAVVDVR_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.774731	999.534909	0.5397	0.00027027	1.4247	0.00071347	1.9644	0.00098374	500.775863834619	8.0858	0.21292	8.0858	8.0059	8.2188	0	687	73	0.863749705078866	0.0488729906777617	0.863749705078866	350.734519137169	0	19.8453843554076						892	25	4	NaN	NaN	NaN	1.9186E-06	1	4275	138.26	75.29	1	581460			14725	764	12381	12738	14725	14725		
NDLEEAFIHFMGK	13	Unmodified	_NDLEEAFIHFMGK_			0	0	0	Q9BRR6	Q9BRR6	Q9BRR6	ADPGK	ADP-dependent glucokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.869034	1549.72351	1.1948	0.00092701	1.4759	0.0011451	2.6707	0.0020721	775.870438883994	17.734	0.1596	17.734	17.637	17.796	0	378	28	1.07192009927972	0.0180592477799895	1.07192009927972	433.159615271516	0	7.29768648402955						204	19	3	NaN	NaN	NaN	1.8325E-06	1	20039	78.043	61.755	1	45779			14726	2712	12382	12739	14726	14726		
NDLMEYAK	8	Unmodified	_NDLMEYAK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.228768	982.442982	0.25749	0.00012674	0.52831	0.00026005	0.7858	0.00038679	492.22900823535	7.0037	0.11536	7.0037	6.9683	7.0836	0	681	34	0.867820189810857	0.0223861150035557	0.867820189810857	352.470609417855	0	9.09226092045776						273	14	3	NaN	NaN	NaN	0.058657	1	3883	24.121	14.728	1	114820			14727	488	12383	12740	14727	14727		
NDLSICGTLHSVDQYLNIK	19	Unmodified	_NDLSICGTLHSVDQYLNIK_			0	0	0	Q9Y333	Q9Y333	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	730.700166	2189.07867	0.29443	0.00021514	0.23539	0.000172	0.52981	0.00038714	731.034301982765	17.521	0.13301	17.521	17.459	17.592	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	595.731229862967	0	13.4257145837447						369	16	5	NaN	NaN	NaN	4.1273E-05	1	34559	66.509	59.987	1	121460			14728	3368	12384	12741	14728	14728		
NDLSPASSGNAVYDFFIGR	19	Unmodified	_NDLSPASSGNAVYDFFIGR_			0	0	0	Q14739	Q14739	Q14739	LBR	Lamin-B receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.48434	2028.95412	1.0641	0.0010806	0.84385	0.00085692	1.908	0.0019375	1015.98672125141	18.169	0.15959	18.169	18.098	18.257	0	201	64	1.18983705239708	0.0417975796455181	1.18983705239708	479.802527118727	0	16.8548998377243						771	19	5	NaN	NaN	NaN	4.309E-07	1	32132	97.268	90.413	1	222670			14729	1773	12385	12742	14729	14729		
NDLSPTTVMSEGAR	14	Unmodified	_NDLSPTTVMSEGAR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.351205	1476.68786	1.7204	0.001272	-3.7293	-0.0027573	-2.0089	-0.0014853	739.351546748605	8.9642	0.27503	8.9642	8.8221	9.0972	0	477	49	1.0055473068722	0.0322585904613818	1.0055473068722	406.516500892337	0	13.0413051961428						1003	32	5	NaN	NaN	NaN	5.1926E-06	1	17785	121.69	110.34	1	726040			14730	894	12386	12743	14730	14730		
NDLYYNTITNFSEK	14	Unmodified	_NDLYYNTITNFSEK_			0	0	0	Q14527	Q14527	Q14527	HLTF	Helicase-like transcription factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.404492	1720.79443	2.2668	0.0019527	4.1263	0.0035544	6.3932	0.0055071	861.409055102571	12.591	0.10641	12.591	12.547	12.653	0	333	37	1.10198982404297	0.024034244886211	1.10198982404297	444.91845993425	0	9.70360976766938						301	13	4	NaN	NaN	NaN	0.00029101	1	25077	78.157	72.769	1	67868			14731	1754	12387	12744	14731	14731		
NDMVELLGPRPFAEK	15	Unmodified	_NDMVELLGPRPFAEK_			0	0	1	Q9Y4W6	Q9Y4W6	Q9Y4W6	AFG3L2	AFG3-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.631023	1714.87124	1.1	0.00062987	-0.17329	-9.9233E-05	0.92667	0.00053064	572.63026403458	12.955	0.097528	12.955	12.91	13.008	0	591	34	0.928742107665821	0.0222962488144068	0.928742107665821	562.46977922581	0	13.5031738570806						174	12	3	NaN	NaN	NaN	0.035393	1	24910	39.702	33.675	1	39011			14732	3416	12388	12745	14732	14732		
NDMVELLGPRPFAEK	15	Unmodified	_NDMVELLGPRPFAEK_			0	0	1	Q9Y4W6	Q9Y4W6	Q9Y4W6	AFG3L2	AFG3-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.442897	1714.87124	2.7682	0.0023763	0.33912	0.00029112	3.1073	0.0026675	858.443482798627	12.955	0.12414	12.955	12.919	13.043	0	267	79	1.14597988355104	0.0519310714110763	1.14597988355104	462.69183375326	0	20.9672813675462						477	15	4	NaN	NaN	NaN	0.030694	1	24912	63.766	60.872	1	116070			14733	3416	12388	12745	14733	14733		
NDNQILSEIVEAK	13	Unmodified	_NDNQILSEIVEAK_			0	0	0	O60502	O60502	O60502	MGEA5	Protein O-GlcNAcase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.883195	1471.75184	1.0911	0.00080403	0.21131	0.00015571	1.3024	0.00095974	736.885067266834	13.691	0.14184	13.691	13.646	13.788	0	399	37	1.0578662689527	0.0241072414200156	1.0578662689527	427.680989824046	0	9.74623085642651						385	17	4	NaN	NaN	NaN	2.2815E-05	1	17648	103.76	94.246	1	90790			14734	262	12389	12746	14734	14734		
NDPHLCDFIETHYLNEQVK	19	Unmodified	_NDPHLCDFIETHYLNEQVK_			0	0	0	P02794	P02794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	791.370708	2371.09029	1.1616	0.00091927	0.23353	0.00018481	1.3951	0.0011041	791.705638143	12.644	0.088674	12.644	12.6	12.689	0	492	52	0.995464410099171	0.0342913380961678	0.995464410099171	601.540131388743	0	20.7216007067591						462	11	5	NaN	NaN	NaN	2.3655E-07	1	36216	69.613	68.518	1	124900			14735	496	12390	12747	14735	14735		
NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK	41	Unmodified	_NDPPMEAAGFTAQVIILNHPGQISAGYAPVLDCHTAHIACK_			0	0	0	P68104	P68104	P68104	EEF1A1	Elongation factor 1-alpha 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1097.03706	4384.11912	1.3691	0.0015019	-0.25423	-0.0002789	1.1149	0.001223	1097.53866809633	16.218	0.40788	16.218	15.934	16.342	0	141	193	1.2295923935727	0.127182738375227	1.2295923935727	988.03737537572	0	102.19752470348						5603	47	7	NaN	NaN	NaN	3.8207E-18	1	38785	115.99	115.59	1	1074100			14736	1446	12391	12748	14736	14736		
NDPQSITADDLHQLLVVAR	19	Unmodified	_NDPQSITADDLHQLLVVAR_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.371037	2104.09128	0.57099	0.00040105	-1.8065	-0.0012688	-1.2355	-0.00086777	702.704736859835	15.819	0.088675	15.819	15.775	15.863	0	522	28	0.975277694896658	0.0181843844613631	0.975277694896658	589.776972747094	0	10.9965923295605						191	11	3	NaN	NaN	NaN	0.028064	1	33376	41.87	35.665	1	35745			14737	2735	12392	12749	14737	14737		
NDPSLPEPK	9	Unmodified	_NDPSLPEPK_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.753464	995.492375	0.74471	0.00037143	2.7009	0.0013471	3.4456	0.0017185	498.755119212205	5.1593	0.32805	5.1593	4.9376	5.2657	0	714	85	0.845418525735192	0.0570660483489364	0.845418525735192	343.30987431369	0	23.1735374727155						677	38	2	NaN	NaN	NaN	0.071673	1	4175	28.096	18.008	1	227040			14738	229	12393	12750	14738	14738		
NDQCYDDIR	9	Unmodified	_NDQCYDDIR_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.743302	1197.47205	1.9172	0.0011498	1.5774	0.00094604	3.4946	0.0020959	599.744502982792	4.3347	0.20387	4.3347	4.2904	4.4943	0	606	31	0.918606045818476	0.0202763400038137	0.918606045818476	372.171159751969	0	8.21491324719176						318	24	3	NaN	NaN	NaN	0.005248	1	9373	67.507	51.926	1	141560			14739	3280	12394	12751	14739	14739		
NDQDTWDYTNPNLSGQGDPGSNPNK	25	Unmodified	_NDQDTWDYTNPNLSGQGDPGSNPNK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	912.058574	2733.15389	2.1836	0.0019916	0.20308	0.00018522	2.3867	0.0021768	912.393078755749	9.78	0.13299	9.78	9.7268	9.8598	0	483	85	1.00151498427745	0.0565150334177107	1.00151498427745	604.729240253068	0	34.1245949966747						860	16	5	NaN	NaN	NaN	3.853E-18	1	37698	131.02	130.64	1	220370			14740	704	12395	12752	14740	14740		
NDQWHWDNIR	10	Unmodified	_NDQWHWDNIR_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.877808	1382.6116	-1.5732	-0.00072663	-0.77874	-0.00035968	-2.352	-0.0010863	461.877564013707	8.9819	0.079838	8.9819	8.9464	9.0262	0	852	28	0.751366682244005	0.0184617312654048	0.751366682244005	455.921271705344	0	11.2023812012366						188	10	3	NaN	NaN	NaN	0.00093487	1	14896	49.16	43.294	1	54360			14741	301	12396	12753	14741	14741		
NDSPTQIPVSSDVCR	15	Unmodified	_NDSPTQIPVSSDVCR_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.891226	1673.7679	2.0309	0.0017017	-0.79357	-0.00066492	1.2373	0.0010367	837.891073599345	7.5979	0.18619	7.5979	7.527	7.7132	0	396	43	1.05987478976334	0.0281251167294885	1.05987478976334	428.01096803246	0	11.357811841248						367	22	3	NaN	NaN	NaN	0.0049612	1	23727	58.313	52.447	1	80064			14742	2339	12397	12754	14742	14742		
NDSQHLFIEPR	11	Unmodified	_NDSQHLFIEPR_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.561597	1354.66296	-1.647	-0.00074537	3.847	0.001741	2.2	0.00099562	452.898030358415	7.0925	0.1597	7.0925	7.0481	7.2077	0	801	31	0.78619514174348	0.0204630863651483	0.78619514174348	477.15207918418	0	12.4193138410944						279	19	4	NaN	NaN	NaN	0.031815	1	14036	23.836	15.362	1	63624			14743	2355	12398	12755	14743	14743		
NDTGFQEGYPYPYPHTLYLLDK	22	Unmodified	_NDTGFQEGYPYPYPHTLYLLDK_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	877.751583	2630.23292	1.2439	0.0010919	0.93091	0.00081711	2.1748	0.001909	878.086701684521	15.198	0.11526	15.198	15.154	15.269	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	604.848993849415	0	15.8324547235478						343	14	4	NaN	NaN	NaN	1.2857E-11	1	37360	122.13	117.76	1	55348			14744	2807	12399	12756	14744	14744		
NDVMNLLESAGFSR	14	Unmodified	_NDVMNLLESAGFSR_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.874847	1551.73514	1.1918	0.00092588	-1.2183	-0.00094647	-0.026502	-2.0588E-05	776.874006467488	17.646	0.1596	17.646	17.566	17.725	0	426	43	1.03977710643793	0.0281561811759454	1.03977710643793	420.165917483102	0	11.3776958767054						484	19	5	NaN	NaN	NaN	1.2391E-07	1	20112	137.58	125.62	1	152300			14745	3321	12400	12757	14745	14745		
NDVNVEFSEK	10	Unmodified	_NDVNVEFSEK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.777667	1179.54078	1.2076	0.00071342	1.6698	0.00098649	2.8774	0.0016999	590.77868782029	6.1702	0.18624	6.1702	6.0904	6.2767	0	624	37	0.906433495720521	0.0243586086467772	0.906433495720521	367.303067299768	0	9.87054396528453						297	22	4	NaN	NaN	NaN	0.036167	1	8861	38.1	17.012	1	102990			14746	3359	12401	12758	14746	14746		
NDVVGTTYLHLSK	13	Unmodified	_NDVVGTTYLHLSK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.882998	1445.75144	1.8173	0.0013155	0.66624	0.00048228	2.4836	0.0017978	723.883633983836	9.1504	0.070924	9.1504	9.106	9.177	0	384	28	1.06790610341098	0.0180667195029678	1.06790610341098	431.812266668663	0	7.30535304080115						179	9	3	NaN	NaN	NaN	0.034281	1	16862	24.744	14.493	1	60652			14747	3136	12402	12759	14747	14747		
NDWHGGAIVSALSQTGSLFK	20	Unmodified	_NDWHGGAIVSALSQTGSLFK_			0	0	0	P51398	P51398	P51398	DAP3	28S ribosomal protein S29, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.688477	2087.0436	-1.7029	-0.0011864	-0.85764	-0.00059751	-2.5606	-0.0017839	697.022441005617	16.732	0.070979	16.732	16.697	16.768	0	675	22	0.871889544407995	0.0142397763386857	0.871889544407995	527.283551833044	0	8.61164111133871						135	9	3	NaN	NaN	NaN	0.0011256	1	33135	46.823	40.92	1	27267			14748	1183	12403	12760	14748	14748		
NDWHGGAIVSALSQTGSLFK	20	Unmodified	_NDWHGGAIVSALSQTGSLFK_			0	0	0	P51398	P51398	P51398	DAP3	28S ribosomal protein S29, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.688477	2087.0436	-0.22329	-0.00015556	1.8545	0.001292	1.6312	0.0011365	697.024052974224	16.732	0.088707	16.732	16.688	16.777	0	477	25	1.0055473068722	0.0161292915341544	1.0055473068722	608.114352781095	0	9.75434334623151						222	11	4	NaN	NaN	NaN	0.00052853	1	33136	71.935	56.407	1	52700			14749	1183	12403	12760	14749	14749		
NEALAALLR	9	Unmodified	_NEALAALLR_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.787641	969.56073	-0.33796	-0.00016418	-1.094	-0.00053147	-1.432	-0.00069565	485.787225277737	12.174	0.10636	12.174	12.13	12.236	0	684	52	0.86578508874114	0.034615952502899	0.86578508874114	351.708544216844	0	14.0620650780394						255	13	2	NaN	NaN	NaN	0.0015909	1	3629	97.033	85.384	1	96362			14750	683	12404	12761	14750	14750		
NEAWLSEVEGK	11	Unmodified	_NEAWLSEVEGK_			0	0	0	Q5T0N5	Q5T0N5	Q5T0N5	FNBP1L	Formin-binding protein 1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.306592	1260.59863	1.2119	0.0007651	6.1644	0.0038916	7.3764	0.0046567	631.307940269568	11.039	0.12414	11.039	10.995	11.119	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	384.263009615179	0	7.37539669034794						185	15	3	NaN	NaN	NaN	0.0027348	1	11227	63.212	38.391	1	46780			14751	1985	12405	12762	14751	14751		
NECDPALALLSDYVLHNSNTMR	22	Unmodified	_NECDPALALLSDYVLHNSNTMR_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	845.065179	2532.17371	0.62894	0.0005315	-0.48006	-0.00040569	0.14888	0.00012581	845.399210947793	18.798	0.1153	18.798	18.736	18.851	0	474	67	1.00756305028564	0.0443433168599838	1.00756305028564	608.625494409453	0	26.7858901137866						720	14	5	NaN	NaN	NaN	0.00033219	1	36967	35.349	34.097	1	155260			14752	1642	12406	12763	14752	14752		
NEDEEEEEEEKDEAEDLLGR	20	Unmodified	_NEDEEEEEEEKDEAEDLLGR_			0	0	1	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.00162	2405.98303	1.3799	0.001108	1.4324	0.0011502	2.8123	0.0022583	803.337007122284	10.587	0.11526	10.587	10.543	10.658	0	582	46	0.934820374997243	0.0303955552959029	0.934820374997243	564.846383813349	0	18.3659021049258						524	14	5	NaN	NaN	NaN	1.447E-22	1	36373	143.25	141.83	1	154690			14753	3430	12407	12764	14753	14753		
NEDITEPQSILAAAEK	16	Unmodified	_NEDITEPQSILAAAEK_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.936156	1727.85776	2.2523	0.0019481	-3.2658	-0.0028247	-1.0135	-0.00087659	864.933284026976	13.123	0.1596	13.123	13.008	13.167	0	354	67	1.08796502040166	0.0440749410199734	1.08796502040166	439.241749043541	0	17.7942799810391						632	19	4	NaN	NaN	NaN	1.8892E-08	1	25262	99.668	80.112	1	204280			14754	3345	12408	12765	14754	14754		
NEDLNAEDVYSR	12	Unmodified	_NEDLNAEDVYSR_			0	0	0	Q16850	Q16850	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.818052	1423.62155	1.8743	0.001336	1.1679	0.0008325	3.0422	0.0021685	712.819043688633	6.9062	0.1064	6.9062	6.8707	6.9771	0	495	34	0.993446994398923	0.0221915758833877	0.993446994398923	401.763592726436	0	8.97457771319307						236	13	3	NaN	NaN	NaN	3.3185E-05	1	16186	134.2	104.89	1	69843			14755	1911	12409	12766	14755	14755		
NEDVCSCSTDTSEVPR	16	Unmodified	_NEDVCSCSTDTSEVPR_			0	0	0	P49790	P49790	P49790	NUP153	Nuclear pore complex protein Nup153	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.375279	1854.73601	2.7717	0.0025732	-2.0646	-0.0019167	0.70711	0.00065646	928.373398997286	5.2036	0.0798	5.2036	5.1593	5.2391	0	351	43	1.08996939197032	0.0280592752418065	1.08996939197032	439.811302431656	0	11.3221403099027						200	10	3	NaN	NaN	NaN	5.7157E-05	1	28581	58.508	58.386	1	35874			14756	1150	12410	12767	14756	14756		
NEEDAAELVALAQAVNAR	18	Unmodified	_NEEDAAELVALAQAVNAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.653433	1882.93847	0.66941	0.00042083	-0.65579	-0.00041226	0.013621	8.5631E-06	628.987403830182	16.528	0.23942	16.528	16.466	16.706	0	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	577.996730381669	0	15.9159934025669						803	28	6	NaN	NaN	NaN	1.3289E-19	1	29216	273.07	259.29	1	653520			14757	804	12411	12768	14757	14757		
NEEDAAELVALAQAVNAR	18	Unmodified	_NEEDAAELVALAQAVNAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.476511	1882.93847	0.78357	0.00073849	0.039129	3.6878E-05	0.8227	0.00077537	942.476652952586	16.519	0.23053	16.519	16.466	16.697	0	63	154	1.28111162701928	0.101133378430106	1.28111162701928	516.881222023145	0	40.8035827072355						2394	27	6	NaN	NaN	NaN	1.1213E-57	1	29217	322.26	300.26	1	1345500			14758	804	12411	12768	14758	14758		
NEEDDMVEMEEER	13	Unmodified	_NEEDDMVEMEEER_			0	0	0	P80303	P80303	P80303	NUCB2	Nucleobindin-2;Nesfatin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.813992	1653.61343	2.2036	0.0018242	-0.11207	-9.2774E-05	2.0915	0.0017314	827.813924749592	8.2277	0.071003	8.2277	8.2011	8.2721	0	453	37	1.02166545906632	0.0241605388886725	1.02166545906632	412.622116359791	0	9.75776620435789						228	9	4	NaN	NaN	NaN	8.4518E-08	1	23147	142.08	141.79	1	54251			14759	1467	12412	12769	14759	14759		
NEEENENSISQYK	13	Unmodified	_NEEENENSISQYK_			0	0	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.344631	1582.67471	2.5964	0.0020572	-1.9483	-0.0015437	0.64809	0.00051351	792.342996274878	4.5652	0.14185	4.5652	4.4943	4.6361	0	453	43	1.02166545906632	0.0281911902363581	1.02166545906632	412.775760424999	0	11.3898731564568						296	17	4	NaN	NaN	NaN	0.00015204	1	21041	101.64	88.369	1	64545			14760	1472	12413	12770	14760	14760		
NEEEVFAWNNEVK	13	Unmodified	_NEEEVFAWNNEVK_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.370452	1606.72635	1.6552	0.0013314	-0.23157	-0.00018627	1.4237	0.0011452	804.870468670417	11.642	0.23947	11.642	11.5	11.74	0	408	70	1.0518390438467	0.0462023803621898	1.0518390438467	424.911373830746	0	18.6643736309241						1092	28	4	NaN	NaN	NaN	0.00010402	1	21800	97.175	74.277	1	252620			14761	1132	12414	12771	14761	14761		
NEENTEPGAESSENADDPNK	20	Unmodified	_NEENTEPGAESSENADDPNK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.9358	2145.85704	4.0499	0.0043494	-3.7423	-0.004019	0.30762	0.00033036	1074.43307996781	3.0222	0.1596	3.0222	2.9868	3.1464	0	213	118	1.18187287897418	0.077805689163438	1.18187287897418	476.414490852012	0	31.3635742452796						872	19	4	NaN	NaN	NaN	3.229E-16	1	33960	155.61	141.75	1	189930			14762	1062	12415	12772	14762	14762		
NEEPSEEEIDAPK	13	Unmodified	_NEEPSEEEIDAPK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.830825	1485.6471	2.273	0.0016907	-1.024	-0.00076168	1.249	0.00092904	743.829788179963	5.2213	0.34584	5.2213	5.1327	5.4785	0	432	55	1.035754240522	0.0362158044532401	1.035754240522	418.704921141199	0	14.640283335955						1340	40	4	NaN	NaN	NaN	6.5797E-05	1	18076	84.309	71.714	1	587320			14763	3011	12416	12773	14763	14763		
NEEVLAVLGHELGHWK	16	Unmodified	_NEEVLAVLGHELGHWK_			0	0	0	O75844	O75844	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.988087	1829.94243	-0.013837	-8.4544E-06	-0.8134	-0.00049698	-0.82724	-0.00050543	610.987648045751	15.225	0.15074	15.225	15.18	15.331	0	630	40	0.902373728295776	0.026386663985959	0.902373728295776	546.225108980444	0	15.9723825721094						342	18	3	NaN	NaN	NaN	1.6222E-06	1	27977	91.939	86.241	1	198800			14764	366	12417	12774	14764	14764		
NEFIPTNFEILPLEK	15	Unmodified	_NEFIPTNFEILPLEK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.480002	1802.94545	1.3565	0.0012242	-1.1711	-0.0010569	0.1854	0.00016732	902.980675651607	18.656	0.19508	18.656	18.621	18.816	0	264	67	1.14797626962532	0.0439356222387777	1.14797626962532	463.316299515801	0	17.7321521804963						731	23	5	NaN	NaN	NaN	0.0058161	1	27299	63.766	39.077	1	223650			14765	702	12418	12775	14765	14765		
NEFNLESK	8	Unmodified	_NEFNLESK_			0	0	0	Q15907;P62491	Q15907	Q15907	RAB11B;RAB11A	Ras-related protein Rab-11B;Ras-related protein Rab-11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.737814	979.461075	0.35763	0.0001755	2.2	0.0010796	2.5576	0.0012551	490.738918729724	5.7268	0.23941	5.7268	5.6825	5.9219	0	720	37	0.841341816837976	0.024467056718703	0.841341816837976	341.730606651947	0	9.93786588059265						393	28	4	NaN	NaN	NaN	0.015076	1	3822	74.486	50.911	1	120440			14766	1875	12419	12776	14766	14766		
NEGCQVYGFLEVNK	14	Unmodified	_NEGCQVYGFLEVNK_			0	0	0	Q9Y282	Q9Y282	Q9Y282	ERGIC3	Endoplasmic reticulum-Golgi intermediate compartment protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.887955	1655.76136	1.8203	0.0015088	3.3397	0.0027683	5.16	0.0042771	828.890259216363	12.547	0.097519	12.547	12.511	12.609	0	369	34	1.07793901817685	0.0220632885593353	1.07793901817685	435.344728497567	0	8.91064912361429						229	12	3	NaN	NaN	NaN	0.0013543	1	23208	59.67	54.842	1	40264			14767	3336	12420	12777	14767	14767		
NEGLTWPELVIGDK	14	Unmodified	_NEGLTWPELVIGDK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.909213	1569.80387	0.86868	0.00068271	-4.2132	-0.0033112	-3.3445	-0.0026285	785.904303457697	16.67	0.26604	16.67	16.502	16.768	0	420	49	1.04379886199097	0.0321696140017538	1.04379886199097	421.748151183536	0	12.9981701681958						373	31	3	NaN	NaN	NaN	0.031428	1	20660	45.183	39.156	1	86681			14768	2614	12421	12778	14768	14768		
NEGNIFPNPEATFVK	15	Unmodified	_NEGNIFPNPEATFVK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.917569	1675.82059	2.0179	0.0016929	1.885	0.0015813	3.9029	0.0032742	839.420555316167	13.753	0.28373	13.753	13.602	13.886	0	369	37	1.07793901817685	0.0240673839691297	1.07793901817685	435.301487201064	0	9.71907302559708						505	33	4	NaN	NaN	NaN	0.0038915	1	23787	68.548	56.53	1	129230			14769	3430	12422	12779	14769	14769		
NEGSESAPEGQAQQR	15	Unmodified	_NEGSESAPEGQAQQR_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.353322	1586.69209	2.4696	0.0019618	-1.3979	-0.0011104	1.0717	0.00085133	794.352419118374	2.1	0.24828	2.1	2.0734	2.3217	0	507	64	0.985374541851584	0.0423774677017295	0.985374541851584	398.10467034144	0	17.1210713213687						818	29	3	NaN	NaN	NaN	6.0917E-18	1	21160	190.37	182.81	1	149960			14770	1440	12423	12780	14770	14770		
NEGVIEFVSYSDMK	14	Unmodified	_NEGVIEFVSYSDMK_			0	0	0	Q08170	Q08170	Q08170	SRSF4	Serine/arginine-rich splicing factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.376888	1616.73922	2.6208	0.0021212	1.4637	0.0011847	4.0844	0.0033058	809.377918078986	13.877	0.15079	13.877	13.824	13.974	0	369	34	1.07793901817685	0.0220663300779218	1.07793901817685	435.431922321026	0	8.91366242651713						393	18	5	NaN	NaN	NaN	0.0017346	1	22095	79.795	76.29	1	100940			14771	1574	12424	12781	14771	14771		
NEHNSILQSLLETLK	15	Unmodified	_NEHNSILQSLLETLK_			0	0	0	Q07866	Q07866	Q07866	KLC1	Kinesin light chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.315981	1737.92611	-1.4906	-0.00086503	1.0557	0.00061263	-0.43494	-0.0002524	580.650777709184	18.639	0.062081	18.639	18.612	18.674	0	696	22	0.857641857947968	0.0142536233772099	0.857641857947968	519.35447388967	0	8.63143863780681						112	8	3	NaN	NaN	NaN	3.9509E-05	1	25550	88.734	85.229	1	24844			14772	1571	12425	12782	14772	14772		
NEHTYVHSSATIPLDDPTLLFANAGMNQFK	30	Unmodified	_NEHTYVHSSATIPLDDPTLLFANAGMNQFK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	833.656758	3330.59793	0.45521	0.00037949	-0.91211	-0.00076039	-0.4569	-0.0003809	834.157336215423	16.635	0.079807	16.635	16.59	16.67	0	546	19	0.959108205975751	0.0121355107414761	0.959108205975751	771.462038115349	0	9.76124048554584						84	10	3	NaN	NaN	NaN	0.00036633	1	38566	25.528	25.478	1	14959			14773	1136	12426	12783	14773	14773		
NEIDNYEEDYQK	12	Unmodified	_NEIDNYEEDYQK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.32845	1558.64235	2.155	0.0016816	-0.059399	-4.635E-05	2.0956	0.0016352	780.327762386626	6.7555	0.16846	6.7555	6.7111	6.8796	0	438	43	1.03173026378327	0.0281756225975058	1.03173026378327	416.897906368248	0	11.3851056655536						435	20	4	NaN	NaN	NaN	1.917E-05	1	20308	135.28	130.13	1	155200			14774	1511	12427	12784	14774	14774		
NEIIILANTTNTELK	15	Unmodified	_NEIIILANTTNTELK_			0	0	0	Q12792	Q12792	Q12792	TWF1	Twinfilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.967259	1685.91997	1.7558	0.0014818	1.3342	0.001126	3.09	0.0026078	843.968459308703	13.185	0.20397	13.185	13.15	13.354	0	246	76	1.1599488233373	0.0499028259015095	1.1599488233373	468.396295788103	0	20.1511466121198						668	24	4	NaN	NaN	NaN	2.0071E-08	1	24085	137.39	105.97	1	149760			14775	1595	12428	12785	14775	14775		
NEILDEVISLSQVTPK	16	Unmodified	_NEILDEVISLSQVTPK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.659525	1783.95674	-0.94695	-0.00056406	1.0441	0.00062192	0.097135	5.7859E-05	595.660470130586	19.073	0.0532	19.073	19.055	19.109	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	553.702649023408	0	8.59740877468039						94	7	3	NaN	NaN	NaN	0.04597	1	26813	14.949	14.949	1	16770			14776	255	12429	12786	14776	14776		
NEILDEVISLSQVTPK	16	Unmodified	_NEILDEVISLSQVTPK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.985649	1783.95674	0.69598	0.0006215	0.694	0.00061973	1.39	0.0012412	892.986027276084	19.091	0.070955	19.091	19.046	19.117	-3.5527E-15	174	43	1.20774045859593	0.0278325512098285	1.20774045859593	487.476359350545	0	11.2339622628674						255	9	4	NaN	NaN	NaN	2.7353E-06	1	26814	67.838	63.532	1	64550			14777	255	12429	12786	14777	14777		
NEIPNSHILDQYR	13	Unmodified	_NEIPNSHILDQYR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.602233	1597.78487	-0.92038	-0.00049112	-0.91104	-0.00048613	-1.8314	-0.00097725	533.601763295139	8.9464	0.31053	8.9464	8.8753	9.1858	0	771	37	0.806643990516186	0.0245147306165753	0.806643990516186	488.810642161549	0	14.8554521647615						541	36	3	NaN	NaN	NaN	0.0013614	1	21507	34.779	31.677	1	179660			14778	970	12430	12787	14778	14778		
NEISEMNR	8	Unmodified	_NEISEMNR_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.726923	991.439294	0.87644	0.00043535	2.3656	0.001175	3.242	0.0016104	496.72800434731	3.51	0.35477	3.51	3.4567	3.8115	-4.4409E-16	729	70	0.835224628594324	0.0468854394660304	0.835224628594324	339.189208935762	0	19.0404288602614						879	41	4	NaN	NaN	NaN	4.4852E-05	1	4079	105.04	34.371	1	356580		+	14779	39	12431	12788	14779	14779		
NELEIPGQYDGR	12	Unmodified	_NELEIPGQYDGR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.833505	1389.65246	1.6468	0.0011459	0.57249	0.00039836	2.2193	0.0015442	695.833820004265	9.1149	0.22169	9.1149	9.0262	9.2479	0	480	64	1.00353128488872	0.0423657519698583	1.00353128488872	405.937260424602	0	17.1373205294536						814	26	5	NaN	NaN	NaN	3.1874E-05	1	15127	103.87	72.954	1	295690			14780	1465	12432	12789	14780	14780		
NELESYAYSLK	11	Unmodified	_NELESYAYSLK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.822075	1315.6296	1.7424	0.0011479	2.216	0.0014599	3.9583	0.0026078	658.823670321003	10.702	0.32808	10.702	10.622	10.95	0	513	85	0.981336640919867	0.056499407568974	0.981336640919867	397.179281612693	0	22.8671723586649						1446	38	5	NaN	NaN	NaN	2.307E-07	1	12827	123.42	95.324	1	2107700			14781	638	12433	12790	14781	14781		
NELHNLLDK	9	Unmodified	_NELHNLLDK_			0	0	0	Q9NVJ2;Q96BM9	Q9NVJ2	Q9NVJ2	ARL8B;ARL8A	ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.293288	1094.57202	1.0906	0.000598	0.8798	0.00048239	1.9704	0.0010804	548.29354228594	6.8441	0.23055	6.8441	6.7821	7.0126	0	618	52	0.910492137470517	0.0344769526882287	0.910492137470517	369.278600794941	0	13.9832078987006						554	27	4	NaN	NaN	NaN	8.3414E-05	1	6572	136.84	121.26	1	247710			14782	3069	12434	12791	14782	14782		
NELLGDDGNSSENQR	15	Unmodified	_NELLGDDGNSSENQR_			0	0	0	Q96AJ9	Q96AJ9	Q96AJ9	VTI1A	Vesicle transport through interaction with t-SNAREs homolog 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.363886	1646.71322	2.4997	0.0020606	-2.1585	-0.0017794	0.34119	0.00028127	824.361797667299	4.8223	0.061981	4.8223	4.7958	4.8578	0	435	25	1.03374239103424	0.0160959081053016	1.03374239103424	417.514194797496	0	6.5009137386694						77	8	2	NaN	NaN	NaN	0.005129	1	22932	27.467	23.221	1	15893			14783	2475	12435	12792	14783	14783		
NELMYQLEQDHDLQAILQER	20	Unmodified	_NELMYQLEQDHDLQAILQER_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.404189	2485.19074	1.355	0.0011238	-2.0163	-0.0016723	-0.66125	-0.00054844	829.736754567574	16.519	0.17732	16.519	16.457	16.635	0	537	73	0.965173861991602	0.0484816592636016	0.965173861991602	583.080168499249	0	29.2887065903469						1450	21	6	NaN	NaN	NaN	8.9382E-39	1	36758	267.51	255.34	1	605080			14784	1575	12436	12793	14784	14784		
NELMYQLEQDHDLQAILQER	20	Oxidation (M)	_NELM(Oxidation (M))YQLEQDHDLQAILQER_	NELM(1)YQLEQDHDLQAILQER	NELM(76)YQLEQDHDLQAILQER	0	1	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.735827	2501.18565	0.75575	0.00063085	0.17947	0.00014981	0.93522	0.00078066	835.070225714096	14.905	0.079802	14.905	14.879	14.959	0	537	40	0.965173861991602	0.0262772407481359	0.965173861991602	583.059429729873	0	15.8740239544696						241	10	4	NaN	NaN	NaN	6.7138E-06	1	36831	75.969	68.321	1	51177			14785	1575	12436	12794	14785	14785	548	
NEMGHTPLDYAR	12	Unmodified	_NEMGHTPLDYAR_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.322251	1402.62995	1.8087	0.0012703	0.57725	0.00040541	2.386	0.0016757	702.323182988333	6.6136	0.15074	6.6136	6.5249	6.6757	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.677917262356	0	8.1413010083271						282	18	3	NaN	NaN	NaN	0.00043973	1	15526	68.49	55.895	1	71003			14786	2839	12437	12795	14786	14786		
NENLAANFLLQQNFDED	17	Unmodified	_NENLAANFLLQQNFDED_			0	0	0	P54727	P54727	P54727	RAD23B	UV excision repair protein RAD23 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.958151	1993.90175	1.3421	0.0013394	0.55282	0.00055169	1.8949	0.001891	998.459712355636	18.408	0.13305	18.408	18.364	18.497	0	225	37	1.17390432875292	0.0239155091765686	1.17390432875292	473.43419834275	0	9.64509597387348						360	16	4	NaN	NaN	NaN	1.1607E-13	1	31518	137.39	135.68	1	66203			14787	1256	12438	12796	14787	14787		
NENLAANFLLSQNFDDE	17	Unmodified	_NENLAANFLLSQNFDDE_			0	0	0	P54725	P54725	P54725	RAD23A	UV excision repair protein RAD23 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.444876	1952.8752	1.1048	0.0010799	1.8601	0.0018182	2.9649	0.002898	977.447289620404	18.701	0.10638	18.701	18.674	18.781	0	243	34	1.16194328902838	0.0219391257106372	1.16194328902838	468.678376632373	0	8.84930781036064						215	13	3	NaN	NaN	NaN	6.536E-05	1	30763	105.08	96.703	1	43049			14788	1255	12439	12797	14788	14788		
NENQLIIFADDTYPR	15	Unmodified	_NENQLIIFADDTYPR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.944315	1807.87408	1.0757	0.00097341	5.3567	0.0048475	6.4323	0.0058209	905.451220246901	14.985	0.070954	14.985	14.959	15.03	0	240	28	1.16393748060522	0.0179427933549365	1.16393748060522	469.748349277863	0	7.24145214013782						132	9	3	NaN	NaN	NaN	0.047779	1	27425	22.395	19.106	1	24652			14789	1841	12440	12798	14789	14789		
NENTEGSPQEDGVELEGLK	19	Unmodified	_NENTEGSPQEDGVELEGLK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.96891	2043.92327	1.7865	0.0018275	-0.41605	-0.00042561	1.3704	0.0014019	1023.47020068752	9.3455	0.1685	9.3455	9.2923	9.4608	0	222	79	1.17589687683038	0.0518454593782931	1.17589687683038	474.157545062797	0	20.9056731298814						887	20	5	NaN	NaN	NaN	2.7224E-45	1	32418	264.57	248.95	1	256460			14790	652	12441	12799	14790	14790		
NENTFLDLTVQQIEHLNK	18	Unmodified	_NENTFLDLTVQQIEHLNK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.55275	2155.09095	0.22228	0.00023974	-0.51228	-0.00055252	-0.28999	-0.00031277	1079.05367896907	17.743	0.062069	17.743	17.716	17.779	0	69	43	1.27715511956461	0.0277069358040583	1.27715511956461	514.808688361344	0	11.1683937693189						118	8	2	NaN	NaN	NaN	9.8576E-05	1	34112	54.912	49.077	1	25666			14791	1912	12442	12800	14791	14791		
NENTFLDLTVQQIEHLNK	18	Unmodified	_NENTFLDLTVQQIEHLNK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.370925	2155.09095	1.0176	0.00073203	-0.83937	-0.00060381	0.17823	0.00012821	719.704688930118	17.743	0.12413	17.743	17.699	17.823	0	522	34	0.975277694896658	0.0222192115744939	0.975277694896658	589.685530894778	0	13.4344788586159						382	15	5	NaN	NaN	NaN	6.1611E-05	1	34113	81.578	68.516	1	150140			14792	1912	12442	12800	14792	14792		
NEPEVEAEQPLCSSQSQCK	19	Unmodified	_NEPEVEAEQPLCSSQSQCK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.48081	2218.94706	1.9741	0.0021921	-1.0388	-0.0011536	0.93522	0.0010385	1110.9808143898	6.5781	0.088689	6.5781	6.5515	6.6402	0	147	43	1.22562176648663	0.0277982078766568	1.22562176648663	493.945042728131	0	11.2031193903821						142	11	2	NaN	NaN	NaN	1.4644E-07	1	34879	89.923	82.933	1	29120			14793	2355	12443	12801	14793	14793		
NEPLTFAWLR	10	Unmodified	_NEPLTFAWLR_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.83258	1245.65061	0.63183	0.00039416	-2.9076	-0.0018138	-2.2757	-0.0014197	623.831761188507	16.174	0.15962	16.174	16.103	16.262	0	567	37	0.944945209309785	0.0242945584092671	0.944945209309785	382.673703834133	0	9.83854784160411						408	19	4	NaN	NaN	NaN	0.00087177	1	10794	60.892	45.31	1	126000			14794	2223	12444	12802	14794	14794		
NEQAFEEVFQNANFR	15	Unmodified	_NEQAFEEVFQNANFR_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.923914	1841.83328	1.9564	0.0018037	0.76961	0.00070952	2.7261	0.0025132	922.425783127291	14.976	0.14187	14.976	14.941	15.083	0	297	40	1.12600091227925	0.0259887509871912	1.12600091227925	454.373924671371	0	10.4872124476827						368	17	3	NaN	NaN	NaN	5.742E-44	1	28275	281.54	232.84	1	159440			14795	865	12445	12803	14795	14795		
NEQDAYAINSYTR	13	Unmodified	_NEQDAYAINSYTR_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.852426	1543.6903	2.3671	0.0018294	-1.3171	-0.001018	1.05	0.00081148	772.851317875156	7.1723	0.27481	7.1723	7.066	7.3408	0	441	55	1.02971785871157	0.0362258060074347	1.02971785871157	416.120230081117	0	14.6392437531862						557	32	3	NaN	NaN	NaN	7.697E-17	1	19843	205.09	163.27	1	459410			14796	832	12446	12804	14796	14796		
NERPDGVLLTFGGQTALNCGVELTK	25	Unmodified	_NERPDGVLLTFGGQTALNCGVELTK_			0	0	1	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	897.125315	2688.35411	0.80771	0.00072462	0.1232	0.00011052	0.93091	0.00083514	897.459427195602	15.269	0.070936	15.269	15.251	15.322	0	459	31	1.01763759082241	0.02014212547595	1.01763759082241	614.516129663337	0	12.1631326341542						160	9	4	NaN	NaN	NaN	0.00053064	1	37572	50.621	50.366	1	26311			14797	867	12447	12805	14797	14797		
NESCSENYTTDFIYQLYSEEGK	22	Unmodified	_NESCSENYTTDFIYQLYSEEGK_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	893.046396	2676.11736	0.56991	0.00050896	0.51053	0.00045592	1.0804	0.00096488	893.381375181734	17.504	0.079824	17.504	17.468	17.548	0	516	43	0.979317271586824	0.0282614045260448	0.979317271586824	591.389725757634	0	17.0664857621695						232	10	4	NaN	NaN	NaN	2.1468E-08	1	37530	93.576	93.472	1	38951			14798	1521	12448	12806	14798	14798		
NESELEAHLCR	11	Unmodified	_NESELEAHLCR_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.311883	1356.60921	1.4046	0.00095413	0.2134	0.00014496	1.618	0.0010991	679.312002815467	5.4342	0.097538	5.4342	5.3987	5.4962	0	486	28	0.999498404980629	0.0181517240953996	0.999498404980629	404.402929675447	0	7.34429426426374						213	12	3	NaN	NaN	NaN	2.3371E-11	1	14078	145.75	98.187	1	63137			14799	1713	12449	12807	14799	14799		
NETDEDGWTTVR	12	Unmodified	_NETDEDGWTTVR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.810227	1421.6059	2.1162	0.0015063	0.095884	6.8251E-05	2.2121	0.0015746	711.810163606292	6.853	0.14187	6.853	6.8087	6.9505	0	525	43	0.973257487423603	0.0282887809416775	0.973257487423603	393.604052880829	0	11.4405272742135						527	17	4	NaN	NaN	NaN	3.3339E-11	1	16127	145.95	139.68	1	227850			14800	1728	12450	12808	14800	14800		
NETGGGEGVEVLVNEPYEK	19	Unmodified	_NETGGGEGVEVLVNEPYEK_			0	0	0	Q00169	Q00169	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.47892	2018.94328	2.342	0.0023666	-2.0204	-0.0020415	0.32165	0.00032502	1010.97877096566	10.871	0.11529	10.871	10.835	10.95	0	219	40	1.17788915118882	0.0259066892227233	1.17788915118882	475.00054333371	0	10.4472406799496						349	14	4	NaN	NaN	NaN	1.4644E-07	1	31966	82.822	73.666	1	88875			14801	1496	12451	12809	14801	14801		
NETLGGTCLNVGCIPSK	17	Unmodified	_NETLGGTCLNVGCIPSK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.437486	1818.86042	2.6301	0.0023946	-0.85908	-0.00078214	1.7711	0.0016124	910.437012347027	10.835	0.23057	10.835	10.746	10.977	0	276	64	1.13998907770044	0.0419472001416383	1.13998907770044	460.061985717238	0	16.9285062198743						1161	27	5	NaN	NaN	NaN	9.0785E-19	1	27687	188.19	176.17	1	369370			14802	607	12452	12810	14802	14802		
NETYNSHPLLVK	12	Unmodified	_NETYNSHPLLVK_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.869891	1413.72523	1.7389	0.0012309	-1.118	-0.0007914	0.62087	0.00043949	707.869424122978	5.3987	0.079789	5.3987	5.3632	5.443	0	459	37	1.01763759082241	0.0241672134976301	1.01763759082241	411.574329441634	0	9.77421115283437						163	10	2	NaN	NaN	NaN	0.005627	1	15883	48.785	37.43	1	41177			14803	2328	12453	12811	14803	14803		
NEVDMQVLHLLGPK	14	Unmodified	_NEVDMQVLHLLGPK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.620347	1591.83921	-0.34255	-0.00018211	-2.0884	-0.0011102	-2.431	-0.0012924	531.619370471805	14.444	0.16849	14.444	14.391	14.56	0	717	34	0.84338031290707	0.0224203443559257	0.84338031290707	511.088531357852	0	13.5867303208795						383	20	3	NaN	NaN	NaN	0.0037072	1	21329	50.09	48.833	1	280710			14804	1101	12454	12812	14804	14804		
NEVDMQVLHLLGPK	14	Unmodified	_NEVDMQVLHLLGPK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.926883	1591.83921	2.1872	0.0017431	0.28069	0.00022369	2.4679	0.0019667	796.927475948273	14.444	0.12415	14.444	14.4	14.524	0	330	40	1.10399226369747	0.0260317206932301	1.10399226369747	446.015352038169	0	10.516873578683						327	15	3	NaN	NaN	NaN	1.1692E-11	1	21331	144.51	117.94	1	129910			14805	1101	12454	12812	14805	14805		
NEVLMVNIGSLSTGGR	16	Unmodified	_NEVLMVNIGSLSTGGR_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.930154	1645.84575	1.3971	0.0011511	-2.321	-0.0019123	-0.92384	-0.00076118	823.928325948094	14.675	0.15075	14.675	14.604	14.755	0	378	40	1.07192009927972	0.0260855828537037	1.07192009927972	432.935545328671	0	10.5356509739606						393	18	4	NaN	NaN	NaN	4.62E-05	1	22924	92.747	66.168	1	99302			14806	1027	12455	12813	14806	14806		
NEVLMVNIGSLSTGGR	16	Oxidation (M)	_NEVLM(Oxidation (M))VNIGSLSTGGR_	NEVLM(1)VNIGSLSTGGR	NEVLM(46)VNIGSLSTGGR	0	1	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.927611	1661.84067	1.7202	0.0014311	-0.97347	-0.00080985	0.74675	0.00062124	831.927631097286	13.238	0.088654	13.238	13.212	13.3	0	387	25	1.06589869032374	0.0160604132229905	1.06589869032374	430.468975935242	0	6.4860851185565						177	11	4	NaN	NaN	NaN	0.00049829	1	23392	46.206	44.496	1	36991			14807	1027	12455	12814	14807	14807	372	
NEVSFVIHNLPVLAK	15	Unmodified	_NEVSFVIHNLPVLAK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.654157	1678.94064	-0.38974	-0.00021851	-1.9399	-0.0010876	-2.3296	-0.0013061	560.653208962508	15.597	0.15961	15.597	15.508	15.668	1.7764E-15	702	67	0.853568545818287	0.0448126835301117	0.853568545818287	517.031357434549	0	27.1443491086549						789	19	3	NaN	NaN	NaN	0.0035729	1	23893	59.731	54.033	1	189880			14808	1154	12456	12815	14808	14808		
NEVSFVIHNLPVLAK	15	Unmodified	_NEVSFVIHNLPVLAK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.477597	1678.94064	1.8537	0.001558	0.1554	0.00013061	2.0091	0.0016886	840.477876575549	15.606	0.1596	15.606	15.517	15.677	0	201	70	1.18983705239708	0.0458223387813266	1.18983705239708	480.481681546072	0	18.5040416632428						721	19	4	NaN	NaN	NaN	1.1356E-11	1	23894	128.57	115.35	1	161190			14809	1154	12456	12815	14809	14809		
NEWDPIIEWAEK	12	Unmodified	_NEWDPIIEWAEK_			0	0	0	Q8N5M1	Q8N5M1	Q8N5M1	ATPAF2	ATP synthase mitochondrial F1 complex assembly factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.367181	1528.71981	0.52724	0.00040353	-2.6412	-0.0020215	-2.1139	-0.0016179	765.365387344295	17.371	0.10642	17.371	17.335	17.442	0	447	31	1.02569221487577	0.0201310011285361	1.02569221487577	414.529506541564	0	8.13586555788606						234	13	3	NaN	NaN	NaN	2.7152E-05	1	19374	64.266	58.238	1	53751			14810	2258	12457	12816	14810	14810		
NFAADHFNQEILPVFLNANR	20	Unmodified	_NFAADHFNQEILPVFLNANR_			0	0	0	Q6PI48	Q6PI48	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.394064	2329.16036	0.29637	0.0002304	1.3435	0.0010444	1.6399	0.0012748	777.729287057886	16.777	0.13299	16.777	16.714	16.847	0	423	31	1.04178812298108	0.0201087800634321	1.04178812298108	629.598655133467	0	12.1526254763622						322	16	4	NaN	NaN	NaN	0.025068	1	35892	49.487	47.097	1	72645			14811	2073	12458	12817	14811	14811		
NFADIDDSWK	10	Unmodified	_NFADIDDSWK_			0	0	0	P06280	P06280	P06280	GLA	Alpha-galactosidase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.772385	1209.53022	0.93415	0.00056589	1.0275	0.00062242	1.9616	0.0011883	605.773108278453	11.332	0.079857	11.332	11.287	11.367	0	558	37	0.951016745717027	0.0242811063417099	0.951016745717027	385.258523388582	0	9.83631804337506						245	10	3	NaN	NaN	NaN	0.020652	1	9708	46.033	37.559	1	64008			14812	538	12459	12818	14812	14812		
NFAEPGSEVYLR	12	Unmodified	_NFAEPGSEVYLR_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.340966	1380.66738	1.3344	0.00092251	-1.5157	-0.0010479	-0.18134	-0.00012537	691.339743552033	9.8776	0.13301	9.8776	9.8332	9.9662	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	396.984788661067	0	6.53478938973171						165	16	2	NaN	NaN	NaN	0.020526	1	14848	36.514	32.268	1	54264			14813	971	12460	12819	14813	14813		
NFAFLEFR	8	Unmodified	_NFAFLEFR_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.269084	1042.52362	-0.11623	-6.0703E-05	-0.86777	-0.00045321	-0.984	-0.00051391	522.268802785372	15.837	0.31922	15.837	15.766	16.085	0	681	49	0.867820189810857	0.0325638877438675	0.867820189810857	352.190034340054	0	13.2154988757037						866	37	4	NaN	NaN	NaN	0.00019018	1	5282	142.36	132.97	1	637430			14814	850	12461	12820	14814	14814		
NFAIGYYLK	9	Unmodified	_NFAIGYYLK_			0	0	0	O94925	O94925	O94925	GLS	Glutaminase kidney isoform, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.792392	1087.57023	-0.081846	-4.4589E-05	-0.23529	-0.00012818	-0.31713	-0.00017277	544.792473223354	13.212	0.10641	13.212	13.176	13.283	0	648	40	0.890187667287968	0.0264049676271125	0.890187667287968	361.072387398889	0	10.7102188119033						221	13	3	NaN	NaN	NaN	0.0084641	1	6407	42.835	37.928	1	57357			14815	397	12462	12821	14815	14815		
NFATSLYSMIK	11	Unmodified	_NFATSLYSMIK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.826106	1273.63766	0.66182	0.00042213	-2.3097	-0.0014732	-1.6479	-0.0010511	637.824865412206	16.573	0.30149	16.573	16.51	16.812	0	558	67	0.951016745717027	0.0445030563663786	0.951016745717027	385.039700443326	0	18.0180249919821						1119	35	4	NaN	NaN	NaN	1.3366E-07	1	11592	136.84	127.45	1	594150			14816	591	12463	12822	14816	14816		
NFDDAFLPVLK	11	Unmodified	_NFDDAFLPVLK_			0	0	0	Q14997	Q14997	Q14997	PSME4	Proteasome activator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.840071	1277.66559	-0.45584	-0.00029166	-1.934	-0.0012374	-2.3898	-0.0015291	639.838704568737	16.794	0.12414	16.794	16.741	16.865	0	561	40	0.948993180460448	0.0263063536302146	0.948993180460448	384.207420854102	0	10.6503360492399						277	15	3	NaN	NaN	NaN	0.0051384	1	11697	64.064	44.809	1	61826			14817	1783	12464	12823	14817	14817		
NFDDATMK	8	Unmodified	_NFDDATMK_			0	0	0	Q99439	Q99439	Q99439	CNN2	Calponin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.205292	940.396032	-0.064321	-3.0308E-05	2.1652	0.0010203	2.1009	0.00098996	471.205705209108	4.3169	0.14181	4.3169	4.2904	4.4322	0	765	28	0.810730346695089	0.0183873254729269	0.810730346695089	329.486384982589	0	7.47273544683475						234	17	3	NaN	NaN	NaN	0.068005	1	3064	41.025	34.262	1	47665			14818	2639	12465	12824	14818	14818		
NFDEALVDYFCDEFK	15	Unmodified	_NFDEALVDYFCDEFK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.408917	1910.80328	1.8458	0.0017654	-1.0779	-0.0010309	0.76794	0.00073446	956.909898470615	19.791	0.053229	19.791	19.774	19.827	0	285	37	1.13399579921816	0.0239780653182871	1.13399579921816	457.476619784056	0	9.673231839425						193	7	5	NaN	NaN	NaN	8.5353E-12	1	29844	146.58	139.37	1	59037			14819	450	12466	12825	14819	14819		
NFDEILR	7	Unmodified	_NFDEILR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.737617	905.460681	-0.51767	-0.00023489	-1.3801	-0.00062618	-1.8977	-0.00086107	453.736973444481	9.7268	0.20394	9.7268	9.6647	9.8686	0	765	40	0.810730346695089	0.0265594729545963	0.810730346695089	329.669431767588	0	10.7999489505743						490	24	4	NaN	NaN	NaN	0.0070186	1	2421	81.32	64.773	1	213660			14820	893	12467	12826	14820	14820		
NFDFEDVFVK	10	Unmodified	_NFDFEDVFVK_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.300778	1258.587	0.23948	0.00015094	-1.9257	-0.0012138	-1.6862	-0.0010628	630.299934423353	16.386	0.17734	16.386	16.324	16.502	0	570	37	0.942920803299286	0.0242979231728671	0.942920803299286	381.810849500934	0	9.83880157832948						513	21	5	NaN	NaN	NaN	0.00083359	1	11160	88.181	81.49	1	208920			14821	1907	12468	12827	14821	14821		
NFEATLGWLQEHACSR	16	Unmodified	_NFEATLGWLQEHACSR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.300336	1917.87918	-0.50909	-0.00032597	-1.4237	-0.0009116	-1.9328	-0.0012376	640.63400943839	14.648	0.088683	14.648	14.613	14.701	1.7764E-15	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	515.271626915883	0	12.3274692284335						285	11	4	NaN	NaN	NaN	9.4454E-05	1	30010	80.815	72.009	1	93318			14822	3161	12469	12828	14822	14822		
NFEATLGWLQEHACSR	16	Unmodified	_NFEATLGWLQEHACSR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.946866	1917.87918	1.0445	0.0010027	-0.29944	-0.00028745	0.7451	0.00071526	960.448567286793	14.648	0.097557	14.648	14.604	14.701	0	132	37	1.23554629282893	0.023813968179581	1.23554629282893	498.430862297891	0	9.60677617939041						288	12	4	NaN	NaN	NaN	2.4574E-06	1	30011	77.696	77.02	1	75498			14823	3161	12469	12828	14823	14823		
NFEDSSPETLEAHK	14	Unmodified	_NFEDSSPETLEAHK_			0	0	0	Q9UI26	Q9UI26	Q9UI26	IPO11	Importin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.365367	1602.71618	2.2266	0.0017866	-0.62094	-0.00049822	1.6057	0.0012883	802.364406805627	5.9219	0.16854	5.9219	5.8421	6.0106	0	378	37	1.07192009927972	0.0240839792188599	1.07192009927972	433.032778578395	0	9.729412152431						373	20	4	NaN	NaN	NaN	3.0905E-08	1	21665	140.57	133.01	1	93446			14824	3233	12470	12829	14824	14824		
NFEDVAFDEK	10	Unmodified	_NFEDVAFDEK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.272218	1212.52988	1.3104	0.0007958	0.27147	0.00016485	1.5819	0.00096065	607.272396048956	9.6558	0.28375	9.6558	9.5672	9.8509	0	594	55	0.926715457081489	0.0364873075787652	0.926715457081489	375.403555480663	0	14.7806588206939						863	33	5	NaN	NaN	NaN	1.1761E-05	1	9799	108.93	89.673	1	591160			14825	554	12471	12830	14825	14825		
NFEHLIPDAPELIHDFLVNEK	21	Unmodified	_NFEHLIPDAPELIHDFLVNEK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	623.322045	2489.25907	0.47319	0.00029495	-0.12703	-7.9181E-05	0.34616	0.00021577	623.572504471915	19.738	0.062054	19.738	19.703	19.765	0	570	22	0.942920803299286	0.014172805463205	0.942920803299286	759.506939903093	0	11.4159578084777						161	8	5	NaN	NaN	NaN	0.00071225	1	36775	40.324	40.29	1	29212			14826	1240	12472	12831	14826	14826		
NFEHLNSDFDR	11	Unmodified	_NFEHLNSDFDR_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	465.209224	1392.60584	-1.5378	-0.00071538	0.29275	0.00013619	-1.245	-0.00057919	465.209405701533	7.0569	0.11537	7.0569	7.0303	7.1457	-8.8818E-16	825	61	0.769815552739974	0.0409661028809166	0.769815552739974	467.08269938189	0	24.8560292769741						351	14	3	NaN	NaN	NaN	0.00078624	1	15222	113.46	105.81	1	99957			14827	1106	12473	12832	14827	14827		
NFESLSEAFSVASAAAVLSHNR	22	Unmodified	_NFESLSEAFSVASAAAVLSHNR_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.716984	2306.12912	1.407	0.001083	0.81793	0.00062958	2.225	0.0017126	770.051851061484	18.355	0.097532	18.355	18.319	18.417	0	387	34	1.06589869032374	0.0220876383289843	1.06589869032374	644.207867367747	0	13.3493272036796						192	12	2	NaN	NaN	NaN	3.669E-08	1	35683	124.69	119.6	1	113790			14828	519	12474	12833	14828	14828		
NFEWVAER	8	Unmodified	_NFEWVAER_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.753798	1049.49304	0.53571	0.00028165	0.11451	6.0204E-05	0.65022	0.00034186	525.753957895764	9.6824	0.15076	9.6824	9.6292	9.78	0	690	37	0.86171403876517	0.024433089026624	0.86171403876517	349.681681178536	0	9.91489434181432						445	18	4	NaN	NaN	NaN	0.00059332	1	5452	91.783	66.932	1	258810			14829	802	12475	12834	14829	14829		
NFGASLLLPGLK	12	Unmodified	_NFGASLLLPGLK_			0	0	0	Q92552	Q92552	Q92552	MRPS27	28S ribosomal protein S27, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.366256	1228.71796	0.22776	0.00014016	-1.1417	-0.00070259	-0.91399	-0.00056244	615.365408681039	16.245	0.15961	16.245	16.182	16.342	0	567	52	0.944945209309785	0.0344006212312528	0.944945209309785	382.731499642817	0	13.9332960501475						450	19	3	NaN	NaN	NaN	0.0047351	1	10279	23.836	19.633	1	105130			14830	2412	12476	12835	14830	14830		
NFGDQPDIR	9	Unmodified	_NFGDQPDIR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.254163	1060.49377	0.71347	0.00037903	2.9241	0.0015534	3.6375	0.0019324	531.25474841356	5.8332	0.29266	5.8332	5.7445	6.0372	0	678	46	0.869855008346864	0.0305222862766339	0.869855008346864	352.937834213804	0	12.3842128979653						890	34	5	NaN	NaN	NaN	0.00015486	1	5731	110.22	98.151	1	370930			14831	1841	12477	12836	14831	14831		
NFGEDMDDER	10	Unmodified	_NFGEDMDDER_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.232767	1226.45098	1.5723	0.00096575	0.94149	0.00057829	2.5138	0.001544	614.233585653924	5.381	0.30143	5.381	5.3366	5.6381	0	579	40	0.936845902828289	0.0263318671085498	0.936845902828289	379.458817527711	0	10.6654244055957						536	35	5	NaN	NaN	NaN	4.9446E-05	1	10185	108.3	107.6	1	318470			14832	661	12478	12837	14832	14832		
NFGEDMDDERLK	12	Unmodified	_NFGEDMDDERLK_			0	0	1	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.217279	1467.63001	-1.4699	-0.00072057	0.84499	0.00041423	-0.62492	-0.00030634	490.217895554701	6.5515	0.1064	6.5515	6.5249	6.6313	0	786	28	0.796423123669906	0.0184052442534667	0.796423123669906	482.984143162897	0	11.161706461387						198	13	4	NaN	NaN	NaN	0.0023156	1	17495	44.57	36.096	1	52193			14833	661	12479	12838	14833	14833		
NFGEDMDDERLK	12	Unmodified	_NFGEDMDDERLK_			0	0	1	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.82228	1467.63001	1.8463	0.0013567	0.54053	0.00039719	2.3868	0.0017539	734.822745608457	6.5515	0.17735	6.5515	6.5072	6.6845	0	441	40	1.02971785871157	0.0261684967549374	1.02971785871157	416.31185744767	0	10.5798451473812						490	21	5	NaN	NaN	NaN	3.742E-06	1	17497	99.174	87.819	1	186310			14834	661	12479	12838	14834	14834		
NFGEEVDDESLK	12	Unmodified	_NFGEEVDDESLK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.309529	1380.6045	1.8712	0.0012936	0.70331	0.00048621	2.5745	0.0017798	691.31004003666	7.8818	0.26613	7.8818	7.8197	8.0858	0	531	43	0.969216233931596	0.0282966100811786	0.969216233931596	392.081831047496	0	11.4469674615959						686	31	5	NaN	NaN	NaN	8.739E-12	1	14835	122.51	113.53	1	475570			14835	1653	12480	12839	14835	14835		
NFGIGQDIQPK	11	Unmodified	_NFGIGQDIQPK_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.81967	1215.62479	1.5397	0.00093738	2.3451	0.0014277	3.8847	0.0023651	608.820592526606	8.7955	0.39941	8.7955	8.6534	9.0528	0	549	88	0.957085760909907	0.0586590847700948	0.957085760909907	387.695157101918	0	23.7615520094832						1698	46	5	NaN	NaN	NaN	1.1905E-05	1	9900	144.47	126.07	1	1908900			14836	1391	12481	12840	14836	14836		
NFGSYVTHETK	11	Unmodified	_NFGSYVTHETK_			0	0	0	P63167;Q96FJ2	P63167;Q96FJ2	P63167	DYNLL1;DYNLL2	Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	428.206932	1281.59897	-0.70649	-0.00030252	-0.05624	-2.4082E-05	-0.76273	-0.00032661	428.20671041136	4.7425	0.15959	4.7425	4.7071	4.8667	0	825	34	0.769815552739974	0.0225360574368206	0.769815552739974	467.479636139087	0	13.6852884994037						192	19	3	NaN	NaN	NaN	0.004519	1	11805	67.881	58.366	1	44491			14837	1429;2525	12482	12841	14837	14837		
NFGSYVTHETK	11	Unmodified	_NFGSYVTHETK_			0	0	0	P63167;Q96FJ2	P63167;Q96FJ2	P63167	DYNLL1;DYNLL2	Dynein light chain 1, cytoplasmic;Dynein light chain 2, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.806759	1281.59897	2.5186	0.0016164	0.48908	0.00031389	3.0076	0.0019303	641.807164001512	4.7514	0.39013	4.7514	4.6982	5.0883	0	501	37	0.98941132619024	0.0242207100839708	0.98941132619024	400.557869904467	0	9.80562459919071						649	45	5	NaN	NaN	NaN	1.7934E-05	1	11806	129.69	114.1	1	410170			14838	1429;2525	12482	12841	14838	14838		
NFGTDPEVTDLVHNTR	16	Unmodified	_NFGTDPEVTDLVHNTR_			0	0	0	O75976	O75976	O75976	CPD	Carboxypeptidase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.627107	1813.85949	0.76076	0.00046074	1.1371	0.00068865	1.8978	0.0011494	605.962151656593	10.152	0.079796	10.152	10.117	10.197	0	606	43	0.918606045818476	0.0284026223535851	0.918606045818476	556.08789694849	0	17.19382819689						236	10	4	NaN	NaN	NaN	0.001227	1	27570	59.67	57.96	1	53296			14839	376	12483	12842	14839	14839		
NFIAQGPYENR	11	Unmodified	_NFIAQGPYENR_			0	0	0	P21281	P21281	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.820201	1307.62585	1.6421	0.0010753	-0.12252	-8.0227E-05	1.5195	0.00099503	654.819920716945	7.2521	0.22167	7.2521	7.1457	7.3674	0	534	46	0.967195187796614	0.0303115059679868	0.967195187796614	391.480679686418	0	12.2688461526565						439	26	3	NaN	NaN	NaN	0.0073239	1	12581	51.872	43.69	1	97745			14840	789	12484	12843	14840	14840		
NFIGDYIGMEEHPELQQFVGK	21	Unmodified	_NFIGDYIGMEEHPELQQFVGK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.726492	2450.15765	0.3319	0.00027141	-5.6007	-0.0045798	-5.2688	-0.0043084	818.05595391862	16.448	0.07096	16.448	16.413	16.484	0	456	88	1.01965166402748	0.0584889418299939	1.01965166402748	616.040239065581	0	35.3371087193865						417	9	3	NaN	NaN	NaN	0.068129	1	36580	2.7455	2.6655	1	76446			14841	1611	12485	12844	14841	14841		
NFILDQTNVSAAAQR	15	Unmodified	_NFILDQTNVSAAAQR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.953154	1646.83763	0.15607	8.5833E-05	-0.67029	-0.00036863	-0.51422	-0.0002828	549.952661828007	10.959	0.133	10.959	10.924	11.057	0	684	28	0.86578508874114	0.0183184547264154	0.86578508874114	524.514847581722	0	11.0977904490467						289	16	5	NaN	NaN	NaN	2.7717E-08	1	22947	143.22	122.88	1	89524			14842	1509	12486	12845	14842	14842		
NFILDQTNVSAAAQR	15	Unmodified	_NFILDQTNVSAAAQR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.426093	1646.83763	2.9447	0.0024277	-0.3372	-0.000278	2.6075	0.0021497	824.426160163479	10.968	0.28375	10.968	10.915	11.199	0	363	64	1.08195024817156	0.042115034279625	1.08195024817156	436.98439668594	0	17.0096664585001						1102	33	5	NaN	NaN	NaN	5.1124E-24	1	22949	236.7	191.88	1	954240			14843	1509	12486	12845	14843	14843		
NFINNPLAQADWAAK	15	Unmodified	_NFINNPLAQADWAAK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.925729	1671.8369	2.0142	0.0016857	2.405	0.0020128	4.4191	0.0036985	836.929081498494	14.764	0.32809	14.764	14.622	14.95	0	342	55	1.09598084995137	0.0360712461548371	1.09598084995137	442.595923092406	0	14.5668480336149						1248	38	5	NaN	NaN	NaN	4.5E-12	1	23666	181.44	177.46	1	555700			14844	972	12487	12846	14844	14844		
NFIQYFHK	8	Unmodified	_NFIQYFHK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.782359	1095.55016	0.55722	0.00030579	1.126	0.00061794	1.6832	0.00092373	548.782931388316	9.1947	0.133	9.1947	9.1326	9.2656	0	645	40	0.892219381832517	0.0264086306406944	0.892219381832517	361.863494752821	0	10.7107282915672						354	16	3	NaN	NaN	NaN	0.0098084	1	6596	56.091	32.515	1	156200			14845	3329	12488	12847	14845	14845		
NFITAEELR	9	Unmodified	_NFITAEELR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.787838	1091.56112	1.0624	0.00058093	0.54647	0.0002988	1.6089	0.00087973	546.787045293686	9.7268	0.3458	9.7268	9.6381	9.9839	0	636	76	0.898312834727904	0.0507717689439033	0.898312834727904	364.351398120681	0	20.5927871501186						845	40	4	NaN	NaN	NaN	0.050117	1	6499	30.593	21.079	1	300880			14846	221	12489	12848	14846	14846		
NFIVWLEDQK	10	Unmodified	_NFIVWLEDQK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.337695	1290.66084	0.38499	0.00024884	-0.57086	-0.00036897	-0.18587	-0.00012013	646.337484159465	16.36	0.20395	16.36	16.28	16.484	0	537	55	0.965173861991602	0.0363813613911358	0.965173861991602	390.716214319861	0	14.7276965884836						719	24	5	NaN	NaN	NaN	0.00058548	1	12096	81.163	71.075	1	228200			14847	3324	12490	12849	14847	14847		
NFLVFQGAVESIAMK	15	Unmodified	_NFLVFQGAVESIAMK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.437083	1652.85961	1.2339	0.001021	0.28796	0.00023827	1.5219	0.0012593	827.437822760396	18	0.10642	18	17.956	18.062	0	366	34	1.07994477139643	0.0220632885593353	1.07994477139643	436.161152695301	0	8.9107791668323						291	13	4	NaN	NaN	NaN	2.3018E-08	1	23142	108.24	103.72	1	71647			14848	1764	12491	12850	14848	14848		
NFLYAWCGK	9	Unmodified	_NFLYAWCGK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.773677	1157.5328	-0.058611	-3.3981E-05	0.71292	0.00041334	0.65431	0.00037935	579.774107586116	12.582	0.19508	12.582	12.52	12.715	-1.7764E-15	627	43	0.90440375274676	0.028418378530508	0.90440375274676	366.561121033598	0	11.5181661514147						655	23	5	NaN	NaN	NaN	0.0036875	1	8262	67.903	55.307	1	413710			14849	1575	12492	12851	14849	14849		
NFLYDIAGCSGTFTVQNR	18	Unmodified	_NFLYDIAGCSGTFTVQNR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.326551	2061.95782	0.15143	0.00010424	0.2712	0.00018668	0.42264	0.00029091	688.661376121793	15.712	0.13302	15.712	15.695	15.828	0	534	16	0.967195187796614	0.0101052309650996	0.967195187796614	584.967535792305	0	6.11172608264621						124	16	3	NaN	NaN	NaN	0.0011726	1	32729	50.641	43.066	1	25561			14850	1155	12493	12852	14850	14850		
NFLYDIAGCSGTFTVQNR	18	Unmodified	_NFLYDIAGCSGTFTVQNR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.98619	2061.95782	1.4726	0.0015197	1.1444	0.001181	2.6169	0.0027006	1032.48814877952	15.721	0.1419	15.721	15.668	15.81	1.7764E-15	171	70	1.20972836110953	0.0457343371843317	1.20972836110953	487.770641222237	0	18.4403934729739						539	17	3	NaN	NaN	NaN	7.9597E-07	1	32730	111.98	107.42	1	153960			14851	1155	12493	12852	14851	14851		
NFNETFLK	8	Unmodified	_NFNETFLK_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.758549	1011.50255	-0.52402	-0.00026555	2.1238	0.0010762	1.5998	0.0008107	506.759099905969	9.3455	0.18633	9.3455	9.3011	9.4874	0	693	34	0.85967808974117	0.0223954425033767	0.85967808974117	349.025112569384	0	9.09244045423509						382	22	3	NaN	NaN	NaN	0.026462	1	4544	49.325	37.258	1	135120			14852	2785	12494	12853	14852	14852		
NFPNAIEHTLQWAR	14	Unmodified	_NFPNAIEHTLQWAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.289989	1695.84814	-1.2078	-0.00068399	-1.7661	-0.0010001	-2.9739	-0.0016841	566.288815712966	13.682	0.21279	13.682	13.558	13.77	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	492.280228981284	0	12.3716753963244						481	25	4	NaN	NaN	NaN	0.036967	1	24373	31.04	23.465	1	118820			14853	804	12495	12854	14853	14853		
NFPNAIEHTLQWAR	14	Unmodified	_NFPNAIEHTLQWAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.289989	1695.84814	-0.96906	-0.00054877	-1.4682	-0.00083145	-2.4373	-0.0013802	566.623383224868	13.673	0.16848	13.673	13.593	13.762	-1.7764E-15	723	19	0.839303037468863	0.012233526764468	0.839303037468863	508.348875286106	0	7.40959974391905						213	20	3	NaN	NaN	NaN	0.03411	1	24374	15.616	11.88	1	42178			14854	804	12495	12854	14854	14854		
NFPNAIEHTLQWAR	14	Unmodified	_NFPNAIEHTLQWAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.289989	1695.84814	-0.39154	-0.00022173	-1.8949	-0.0010731	-2.2864	-0.0012948	566.288662821077	13.637	0.097523	13.637	13.611	13.708	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	529.31797161514	0	12.3202092865423						124	12	2	NaN	NaN	NaN	0.069334	1	24375	21.15	18.671	1	27945			14855	804	12495	12854	14855	14855		
NFPNAIEHTLQWAR	14	Unmodified	_NFPNAIEHTLQWAR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.931345	1695.84814	2.4315	0.0020642	-0.074814	-6.3512E-05	2.3567	0.0020007	849.9336350423	13.691	0.44334	13.691	13.407	13.85	0	270	130	1.14398322290989	0.0860221411616118	1.14398322290989	461.927218586001	0	34.7347475101263						2408	51	6	NaN	NaN	NaN	0.0001752	1	24378	99.589	87.007	1	1029300			14856	804	12495	12854	14856	14856		
NFQLEEEEQNEAK	13	Unmodified	_NFQLEEEEQNEAK_			0	0	0	Q9Y5A7	Q9Y5A7	Q9Y5A7	NUB1	NEDD8 ultimate buster 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.362824	1606.71109	2.1946	0.0017653	0.072509	5.8324E-05	2.2671	0.0018236	804.363026658565	6.7732	0.088687	6.7732	6.7466	6.8353	-8.8818E-16	384	28	1.06790610341098	0.0180667195029678	1.06790610341098	431.402017087752	0	7.29841248293667						133	11	2	NaN	NaN	NaN	9.6053E-05	1	21796	99.34	87.985	1	41599			14857	3425	12496	12855	14857	14857		
NFQPVIIFSFSK	12	Unmodified	_NFQPVIIFSFSK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.890095	1425.76564	0.99538	0.00071059	0.36718	0.00026212	1.3626	0.00097272	714.393703738932	17.743	0.11526	17.743	17.708	17.823	0	486	43	0.999498404980629	0.0282418742669083	0.999498404980629	404.20502048375	0	11.421236201749						307	14	4	NaN	NaN	NaN	0.0018256	1	16261	41.824	32.847	1	92666			14858	1047	12497	12856	14858	14858		
NFSGPVPDLPEGITVAYTIPK	21	Unmodified	_NFSGPVPDLPEGITVAYTIPK_			0	0	0	Q9GZZ9	Q9GZZ9	Q9GZZ9	UBA5	Ubiquitin-like modifier-activating enzyme 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1108.08589	2214.15724	0.6671	0.0007392	-1.2688	-0.0014059	-0.6017	-0.00066673	1108.58615153531	17.557	0.079791	17.557	17.53	17.61	0	111	46	1.24942920585258	0.0297409520132894	1.24942920585258	503.546597689206	0	11.9862374980347						276	10	4	NaN	NaN	NaN	0.067967	1	34846	17.813	15.424	1	66402			14859	2837	12498	12857	14859	14859		
NFSNMDDEENYSAASK	16	Unmodified	_NFSNMDDEENYSAASK_			0	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.365238	1820.71592	2.4881	0.0022676	-1.5342	-0.0013982	0.95385	0.00086931	911.363919441846	6.7111	0.062045	6.7111	6.6845	6.7466	0	330	28	1.10399226369747	0.0180219585997581	1.10399226369747	445.531425366341	0	7.27301192850001						153	8	3	NaN	NaN	NaN	8.5459E-09	1	27735	126.63	125.45	1	35831			14860	193	12499	12858	14860	14860		
NFTEVHPDYGSHIQALLDK	19	Unmodified	_NFTEVHPDYGSHIQALLDK_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	546.773459	2183.06473	-0.24347	-0.00013312	2.0011	0.0010941	1.7576	0.000961	547.024944166706	11.89	0.088702	11.89	11.855	11.944	0	609	25	0.916577990479294	0.0162255683873757	0.916577990479294	738.862216362096	0	13.0795846561429						221	11	5	NaN	NaN	NaN	0.064096	1	34497	5.0817	2.98	1	52087			14861	501	12500	12859	14861	14861		
NFTMDTESSVYNFEGEDYREK	21	Unmodified	_NFTMDTESSVYNFEGEDYREK_			0	0	1	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.363947	2560.07001	1.2336	0.001054	1.3661	0.0011671	2.5997	0.0022211	854.699468420418	11.855	0.062077	11.855	11.828	11.89	0	420	34	1.04379886199097	0.0221150800336967	1.04379886199097	630.476482199781	0	13.3579738117519						209	8	4	NaN	NaN	NaN	6.1372E-06	1	37062	74.643	73.217	1	46366			14862	251	12501	12860	14862	14862		
NFTTEQVTAMLLSK	14	Unmodified	_NFTTEQVTAMLLSK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.910898	1581.80724	1.4808	0.0011726	0.93995	0.00074436	2.4207	0.001917	791.911573504767	16.165	0.29261	16.165	15.996	16.289	0	384	46	1.06790610341098	0.0301029015491134	1.06790610341098	431.460059461681	0	12.1623049544002						570	34	4	NaN	NaN	NaN	6.7602E-07	1	21027	135.5	120.74	1	276840			14863	955	12502	12861	14863	14863		
NFVASHIANILNSEDLYVQDLK	22	Unmodified	_NFVASHIANILNSEDLYVQDLK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	835.099094	2502.27545	1.5397	0.0012858	0.43324	0.0003618	1.9729	0.0016476	835.433951541353	17.956	0.15962	17.956	17.912	18.071	0	357	40	1.08596037261705	0.0260640179471912	1.08596037261705	656.024718538844	0	15.7451786169614						434	19	5	NaN	NaN	NaN	5.9388E-06	1	36841	89.636	88.825	1	132380		+	14864	22	12503	12862	14864	14864		
NFVELISHQQLSK	13	Unmodified	_NFVELISHQQLSK_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.917372	1541.82019	2.2996	0.0017751	-1.7653	-0.0013626	0.53435	0.00041248	771.916412439927	11.341	0.044377	11.341	11.314	11.358	0	327	25	1.10599442759226	0.0160184153365035	1.10599442759226	446.949244868195	0	6.47328635662421						76	6	2	NaN	NaN	NaN	0.00051125	1	19785	72.846	59.048	1	15739			14865	3102	12504	12863	14865	14865		
NFVLPEEIIQEVR	13	Unmodified	_NFVLPEEIIQEVR_			0	0	0	Q9NV56	Q9NV56	Q9NV56	MRGBP	MRG/MORF4L-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.432855	1584.85116	0.89369	0.00070908	2.6212	0.0020798	3.5149	0.0027889	793.435410215769	17.876	0.17732	17.876	17.743	17.92	0	378	34	1.07192009927972	0.0220754584082121	1.07192009927972	433.074586123373	0	8.91887372952914						225	21	4	NaN	NaN	NaN	2.5608E-05	1	21111	76.255	61.28	1	45647			14866	3060	12505	12864	14866	14866		
NFVNTFIQFK	10	Unmodified	_NFVNTFIQFK_			0	0	0	Q9Y232;Q9Y6F7;Q9Y6F8	Q9Y232	Q9Y232	CDYL;CDY2A;CDY1	Chromodomain Y-like protein;Testis-specific chromodomain protein Y 2;Testis-specific chromodomain protein Y 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.334956	1256.65536	1.2911	0.00081255	8.9014	0.005602	10.193	0.0064145	629.341042998149	15.508	0.14199	15.508	15.455	15.597	0	543	46	0.961130371139249	0.0303324855868733	0.961130371139249	389.190778720153	0	12.2825415162775						507	17	4	NaN	NaN	NaN	0.027956	1	11114	48.157	0	1	173000			14867	3326	12506	12865	14867	14867		
NFYNEHEEITNLTPQQLIDLR	21	Unmodified	_NFYNEHEEITNLTPQQLIDLR_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.097753	2586.27143	0.75276	0.0006497	-1.0903	-0.00094104	-0.33755	-0.00029134	863.43114085526	15.881	0.1153	15.881	15.819	15.934	0	531	43	0.969216233931596	0.0282887809416775	0.969216233931596	585.394988549554	0	17.0860846276362						451	14	5	NaN	NaN	NaN	0.00025519	1	37183	44.853	43.837	1	104070			14868	2189	12507	12866	14868	14868		
NFYQEHPDLAR	11	Unmodified	_NFYQEHPDLAR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.889714	1388.64731	0.03266	1.5151E-05	0.70822	0.00032853	0.74088	0.00034368	463.889665340943	6.0461	0.20394	6.0461	6.0017	6.2057	0	750	37	0.820941264895493	0.024497688241599	0.820941264895493	498.11697090657	0	14.8642963667714						539	24	5	NaN	NaN	NaN	0.00037179	1	15092	88.181	80.623	1	282470			14869	743	12508	12867	14869	14869		
NFYQEHPDLAR	11	Unmodified	_NFYQEHPDLAR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.330933	1388.64731	2.6095	0.0018145	2.9096	0.0020231	5.5191	0.0038376	695.330722161189	6.0461	0.27489	6.0461	5.9751	6.25	0	480	70	1.00353128488872	0.0464005903678208	1.00353128488872	405.940145797603	0	18.7695816788579						1310	32	5	NaN	NaN	NaN	1.8552E-11	1	15093	187.23	172.78	1	716780			14870	743	12508	12867	14870	14870		
NFYVEHPEVAR	11	Unmodified	_NFYVEHPEVAR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.226326	1359.65715	-0.8297	-0.00037687	2.1415	0.00097271	1.3118	0.00059584	454.227368848981	6.3121	0.14193	6.3121	6.2411	6.3831	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	500.699062499065	0	9.90885346772785						194	17	3	NaN	NaN	NaN	0.0048982	1	14181	55.235	37.839	1	42219			14871	2435	12509	12868	14871	14871		
NFYVEHPEVAR	11	Unmodified	_NFYVEHPEVAR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.835851	1359.65715	1.8209	0.0012397	0.0015743	1.0718E-06	1.8225	0.0012408	680.836228550999	6.3121	0.3281	6.3121	6.1614	6.4895	0	498	58	0.991429299781895	0.0383150231076109	0.991429299781895	401.129053181132	0	15.5021330771143						786	38	5	NaN	NaN	NaN	0.0012542	1	14182	58.889	55.787	1	366900			14872	2435	12509	12868	14872	14872		
NGDGVVDIGELQEGLR	16	Unmodified	_NGDGVVDIGELQEGLR_			0	0	0	Q6NUK1	Q6NUK1	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.92084	1669.82713	1.9355	0.0016179	-7.6067	-0.0063586	-5.6713	-0.0047407	836.414366972192	15.65	0.27483	15.65	15.553	15.828	0	330	85	1.10399226369747	0.0561263229002051	1.10399226369747	445.835663707858	0	22.6660251566325						840	32	5	NaN	NaN	NaN	0.02761	1	23617	30.875	0	1	204020			14873	2045	12510	12869	14873	14873		
NGESSELDLQGIR	13	Unmodified	_NGESSELDLQGIR_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.34952	1416.68449	2.1184	0.0015027	-7.1222	-0.0050521	-5.0038	-0.0035494	709.344166404057	9.1149	0.39908	9.1149	9.0174	9.4164	0	477	67	1.0055473068722	0.0443617044097231	1.0055473068722	406.676317009671	0	17.9413285106742						1269	46	6	NaN	NaN	NaN	0.0039947	1	15985	55.578	42.982	1	693910			14874	3341	12511	12870	14874	14874		
NGETELCMEGR	11	Unmodified	_NGETELCMEGR_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.271369	1294.52819	1.2424	0.00080542	0.90286	0.0005853	2.1453	0.0013907	648.271965071798	5.31	0.1153	5.31	5.2657	5.381	0	591	31	0.928742107665821	0.0202622968311691	0.928742107665821	375.956218311848	0	8.20220858738048						205	14	3	NaN	NaN	NaN	4.8198E-09	1	12193	133.76	126.61	1	49713			14875	434	12512	12871	14875	14875		
NGFLLDGFPR	10	Unmodified	_NGFLLDGFPR_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.298373	1134.58219	-0.205	-0.0001165	0.060563	3.4418E-05	-0.14444	-8.2084E-05	568.298298909933	14.923	0.25714	14.923	14.808	15.065	0	627	31	0.90440375274676	0.0203016545312636	0.90440375274676	366.648413439055	0	8.23036105441707						291	30	2	NaN	NaN	NaN	0.035649	1	7657	52.591	44.408	1	73588			14876	1257	12513	12872	14876	14876		
NGGLGHMNIALLSDLTK	17	Unmodified	_NGGLGHMNIALLSDLTK_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.313694	1752.91925	-0.16038	-9.3875E-05	-1.9562	-0.001145	-2.1166	-0.0012389	585.312535899239	15.464	0.10654	15.464	15.411	15.517	0	666	28	0.877991458330206	0.0183006625091034	0.877991458330206	531.641464127095	0	11.081418752455						184	13	3	NaN	NaN	NaN	0.026485	1	25980	45.183	41.201	1	45811			14877	898	12514	12873	14877	14877		
NGGLGHMNIALLSDLTK	17	Unmodified	_NGGLGHMNIALLSDLTK_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.313694	1752.91925	-0.89681	-0.00052491	-1.0942	-0.00064043	-1.991	-0.0011653	585.313028064395	15.455	0.088797	15.455	15.437	15.526	0	732	25	0.833184998970724	0.0163204408443606	0.833184998970724	504.510249548196	0	9.882354691091						207	11	4	NaN	NaN	NaN	0.0012284	1	25981	50.314	44.286	1	51459			14878	898	12514	12873	14878	14878		
NGGLGHMNIALLSDLTK	17	Unmodified	_NGGLGHMNIALLSDLTK_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.466903	1752.91925	2.1213	0.0018614	1.5228	0.0013362	3.644	0.0031975	877.468184642289	15.464	0.10653	15.464	15.429	15.535	0	246	52	1.1599488233373	0.0339199138812398	1.1599488233373	468.250305553516	0	13.6928541326007						354	13	4	NaN	NaN	NaN	6.536E-05	1	25983	81.908	75.88	1	73268			14879	898	12514	12873	14879	14879		
NGGQILIADLR	11	Unmodified	_NGGQILIADLR_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.335487	1168.65642	0.38685	0.00022644	-0.22171	-0.00012977	0.16515	9.6666E-05	585.335262604654	11.58	0.062213	11.58	11.553	11.616	0	570	37	0.942920803299286	0.024301288635538	0.942920803299286	382.129520635981	0	9.84837723872687						136	8	3	NaN	NaN	NaN	0.008086	1	8581	48.785	35.958	1	31129			14880	1275	12515	12874	14880	14880		
NGIHDLDNISFPK	13	Unmodified	_NGIHDLDNISFPK_			0	0	0	P49721	P49721	P49721	PSMB2	Proteasome subunit beta type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.584291	1468.73104	-0.98098	-0.00048126	-1.9877	-0.00097511	-2.9686	-0.0014564	490.583554884847	11.075	0.088653	11.075	11.03	11.119	0	822	31	0.771863999559055	0.0204830439886194	0.771863999559055	468.087207241536	0	12.421684211099						225	11	3	NaN	NaN	NaN	0.03018	1	17541	29.317	27.18	1	63913			14881	1143	12516	12875	14881	14881		
NGPLEVAGAAVSAGHGLPAK	20	Unmodified	_NGPLEVAGAAVSAGHGLPAK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.489224	1814.9639	1.412	0.0012828	-0.18514	-0.00016819	1.2268	0.0011146	908.488927088595	10.525	0.23943	10.525	10.347	10.587	0	108	43	1.25141139212444	0.0277601231172213	1.25141139212444	505.03655837353	0	11.2032518861333						335	28	2	NaN	NaN	NaN	4.9706E-22	1	27609	179.9	163.61	1	71090			14882	324	12517	12876	14882	14882		
NGQDLGVAFK	10	Unmodified	_NGQDLGVAFK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.774731	1047.53491	0.19101	0.00010023	-1.1134	-0.0005843	-0.92243	-0.00048407	524.774015024325	7.5801	0.23955	7.5801	7.456	7.6956	0	693	67	0.85967808974117	0.0447753579488978	0.85967808974117	348.863947775168	0	18.1701829132364						632	28	4	NaN	NaN	NaN	0.00087177	1	5408	60.892	51.499	1	232470			14883	1509	12518	12877	14883	14883		
NGSEADIDEGLYSR	14	Unmodified	_NGSEADIDEGLYSR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.341891	1524.66923	1.5309	0.0011686	1.8002	0.0013742	3.3311	0.0025428	763.343150820133	7.5536	0.16847	7.5536	7.4738	7.6422	0	459	43	1.01763759082241	0.0281989788945491	1.01763759082241	411.284050379176	0	11.3967785397297						241	20	2	NaN	NaN	NaN	5.9628E-05	1	19256	102.57	88.112	1	144950			14884	804	12519	12878	14884	14884		
NGTQVHGTITGVDVSMNTHLK	21	Unmodified	_NGTQVHGTITGVDVSMNTHLK_			0	0	0	P62314	P62314	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.039181	2208.09571	1.6668	0.0012285	1.193	0.00087929	2.8598	0.0021078	737.374434839955	8.1213	0.1418	8.1213	8.077	8.2188	0	447	31	1.02569221487577	0.020133781351245	1.02569221487577	620.072569714212	0	12.1716879191118						340	17	5	NaN	NaN	NaN	3.578E-05	1	34764	80.026	74.411	1	107630			14885	1385	12520	12879	14885	14885		
NGVQAMVEFDSVQSAQR	17	Unmodified	_NGVQAMVEFDSVQSAQR_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.444157	1864.87376	1.6312	0.0015226	0.401	0.00037431	2.0322	0.0018969	933.444401154454	11.553	0.17741	11.553	11.509	11.687	0	270	28	1.14398322290989	0.0179724190816779	1.14398322290989	461.587674846169	0	7.25172097731547						212	21	2	NaN	NaN	NaN	5.533E-07	1	28796	69.327	67.616	1	55665			14886	704	12521	12880	14886	14886		
NHDEESLECLCR	12	Unmodified	_NHDEESLECLCR_			0	0	0	Q04637;O43432	Q04637;O43432	Q04637	EIF4G1;EIF4G3	Eukaryotic translation initiation factor 4 gamma 1;Eukaryotic translation initiation factor 4 gamma 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.322122	1560.62969	1.9402	0.0015159	-0.6667	-0.00052091	1.2735	0.00099498	781.321933546907	5.8598	0.19513	5.8598	5.8155	6.0106	0	465	52	1.01360860968299	0.0342534486123975	1.01360860968299	409.57078230949	0	13.8408569254017						711	23	5	NaN	NaN	NaN	1.9415E-07	1	20348	138.71	100.96	1	274000			14887	1544;202	12522	12881	14887	14887		
NHDHQEIAVPVANLK	15	Unmodified	_NHDHQEIAVPVANLK_			0	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.94191	1683.86927	2.3917	0.0020161	-1.7236	-0.0014529	0.6681	0.00056317	842.941326892647	7.1191	0.11518	7.1191	7.066	7.1811	0	360	40	1.08395544855938	0.0260640179471912	1.08395544855938	437.713940915496	0	10.5249565624857						320	14	3	NaN	NaN	NaN	0.00022951	1	24019	98.865	82.578	1	110860			14888	346	12523	12882	14888	14888		
NHDHQEIAVPVANLK	15	Unmodified	_NHDHQEIAVPVANLK_			0	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.297032	1683.86927	0.32135	0.00018069	0.45081	0.00025349	0.77216	0.00043418	562.296990514988	7.1102	0.13311	7.1102	7.0569	7.19	0	705	97	0.851531465363931	0.0651278357571798	0.851531465363931	515.785083936095	0	39.4488842737438						856	16	4	NaN	NaN	NaN	9.9545E-06	1	24020	150.44	139.66	1	232250			14889	346	12523	12882	14889	14889		
NHEEEMNALR	10	Unmodified	_NHEEEMNALR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2	Q04695	Q04695	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.855905	1241.54588	-0.55083	-0.00022852	2.0345	0.00084402	1.4837	0.00061551	414.856401857042	3.4035	0.12425	3.4035	3.3592	3.4834	0	867	28	0.741107305531458	0.0184720295659375	0.741107305531458	450.200724377923	0	11.2212105173513						185	15	3	NaN	NaN	NaN	0.00050726	1	10656	118.06	111.37	1	44647		+	14890	36	12524	12883	14890	14890		
NHEEEMNALR	10	Unmodified	_NHEEEMNALR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2	Q04695	Q04695	KRT17;KRT14	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.780219	1241.54588	2.6824	0.0016679	0.56567	0.00035172	3.2481	0.0020196	621.780059435112	3.3947	0.42569	3.3947	3.3326	3.7583	0	570	103	0.942920803299286	0.0689109893067313	0.942920803299286	381.867706062521	0	27.9078384069845						1330	49	5	NaN	NaN	NaN	3.9289E-10	1	10657	174.8	167.16	1	956590		+	14891	36	12524	12883	14891	14891		
NHGLSDEHVFEVICPSIPGYGFSEASSK	28	Unmodified	_NHGLSDEHVFEVICPSIPGYGFSEASSK_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	766.609277	3062.408	0.57204	0.00043853	1.9942	0.0015288	2.5662	0.0019673	766.8614046229	14.834	0.12416	14.834	14.755	14.879	0	420	31	1.04379886199097	0.0201060050174831	1.04379886199097	839.889060297928	0	16.1782257821866						351	15	6	NaN	NaN	NaN	0.00028153	1	38309	60.329	60.307	1	69263			14892	551	12525	12884	14892	14892		
NHIENQDECVLNVISHAR	18	Unmodified	_NHIENQDECVLNVISHAR_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.679876	2147.0178	1.5618	0.0011193	-0.018238	-1.3071E-05	1.5435	0.0011062	717.014236192831	10.143	0.079802	10.143	10.099	10.179	0	498	22	0.991429299781895	0.0141238631290448	0.991429299781895	599.465749894947	0	8.53996568784987						152	10	4	NaN	NaN	NaN	0.003461	1	33981	40.53	38.141	1	29567			14893	2807	12526	12885	14893	14893		
NHLLHVFDEYK	11	Unmodified	_NHLLHVFDEYK_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.241976	1413.7041	-0.7011	-0.00033109	0.046682	2.2045E-05	-0.65442	-0.00030904	472.242279809824	8.9021	0.18635	8.9021	8.831	9.0174	0	753	34	0.81889964927511	0.0224608985391257	0.81889964927511	496.791486319345	0	13.6260690540015						424	22	5	NaN	NaN	NaN	0.0046685	1	15875	54.584	48.32	1	259960			14894	604	12527	12886	14894	14894		
NHPMTPEAVK	10	Unmodified	_NHPMTPEAVK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.281866	1122.54918	1.8384	0.0010337	1.7078	0.00096027	3.5462	0.001994	562.282905873895	2.6764	0.06208	2.6764	2.6409	2.703	0	642	16	0.894250814548268	0.0101557550210465	0.894250814548268	362.579021250699	0	4.11770798045399						55	8	2	NaN	NaN	NaN	0.031247	1	7333	26.947	19.796	1	9291.1			14895	1195	12528	12887	14895	14895		
NHPQMIAVLVDK	12	Unmodified	_NHPQMIAVLVDK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.871379	1363.72821	1.6055	0.0010963	-0.85054	-0.00058081	0.75492	0.00051551	682.870856799973	9.1592	0.16848	9.1592	9.106	9.2745	0	459	28	1.01763759082241	0.0181241570782431	1.01763759082241	411.72047528881	0	7.33275444397924						277	20	4	NaN	NaN	NaN	2.1684E-05	1	14310	88.24	69.904	1	88486			14896	1583	12529	12888	14896	14896		
NHPWLELSDVHR	12	Unmodified	_NHPWLELSDVHR_			0	0	0	Q9Y2S7	Q9Y2S7	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.588147	1501.74261	-0.73516	-0.00036875	-2.5231	-0.0012656	-3.2583	-0.0016343	501.921020288877	8.6979	0.22191	8.6979	8.6357	8.8576	0	753	79	0.81889964927511	0.0530709782347122	0.81889964927511	496.50962863368	0	32.1776321651478						846	26	4	NaN	NaN	NaN	0.0020982	1	18569	67.548	67.548	1	250310			14897	3351	12530	12889	14897	14897		
NHTLALTETGSVFAFGENK	19	Unmodified	_NHTLALTETGSVFAFGENK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.50781	2035.00107	1.3592	0.0013844	0.58916	0.00060006	1.9484	0.0019845	1019.0092357746	13.212	0.17735	13.212	13.159	13.336	0	153	40	1.22165005014568	0.0258179317193954	1.22165005014568	492.621190630785	0	10.41088670337						420	21	4	NaN	NaN	NaN	0.0011725	1	32246	45.17	44.075	1	93704			14898	3151	12531	12890	14898	14898		
NHTLALTETGSVFAFGENK	19	Unmodified	_NHTLALTETGSVFAFGENK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.340966	2035.00107	0.84046	0.00057096	1.5734	0.0010689	2.4139	0.0016398	679.676611426927	13.221	0.22169	13.221	13.132	13.354	0	486	40	0.999498404980629	0.0262264093657728	0.999498404980629	604.558286154534	0	15.8633500755474						280	26	4	NaN	NaN	NaN	2.6083E-05	1	32247	133.47	132.29	1	75137			14899	3151	12531	12890	14899	14899		
NHTLQEQVTQLTEK	14	Unmodified	_NHTLQEQVTQLTEK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.931208	1667.84786	3.0152	0.0025175	-1.19	-0.00099359	1.8252	0.0015239	835.431788763227	8.2454	0.14195	8.2454	8.1833	8.3253	0	351	28	1.08996939197032	0.0180368604002248	1.08996939197032	440.176950193087	0	7.28406711281815						252	17	4	NaN	NaN	NaN	0.00020004	1	23581	86.838	82.592	1	56549			14900	1810	12532	12891	14900	14900		
NHYNEEMSNLR	11	Unmodified	_NHYNEEMSNLR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.809507	1405.60446	2.3728	0.00167	0.59237	0.00041692	2.9651	0.0020869	703.810339015014	4.2726	0.1064	4.2726	4.246	4.3524	0	492	31	0.995464410099171	0.0201727650206149	0.995464410099171	402.6291133685	0	8.15914904846488						177	13	3	NaN	NaN	NaN	0.00048347	1	15630	99.855	85.093	1	42912			14901	718	12533	12892	14901	14901		
NIADLMTQAGVEELESENK	19	Unmodified	_NIADLMTQAGVEELESENK_			0	0	0	O75506	O75506	O75506	HSBP1	Heat shock factor-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.668531	2089.98376	-0.54994	-0.00038368	0.53978	0.00037659	-0.010165	-7.0915E-06	698.003059009832	16.732	0.17737	16.732	16.697	16.874	0	564	49	0.946969335010767	0.0323882634734276	0.946969335010767	572.683448886245	0	19.5869303721307						383	21	4	NaN	NaN	NaN	0.014508	1	33183	51.07	44.693	1	81269			14902	340	12534	12893	14902	14902		
NIADLMTQAGVEELESENK	19	Unmodified	_NIADLMTQAGVEELESENK_			0	0	0	O75506	O75506	O75506	HSBP1	Heat shock factor-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.99916	2089.98376	1.0541	0.0011026	1.6434	0.001719	2.6975	0.0028216	1046.50290323581	16.741	0.17734	16.741	16.679	16.856	0	180	103	1.203763835057	0.0676119705568607	1.203763835057	485.322164900994	0	27.2591574595062						1614	21	7	NaN	NaN	NaN	1.0308E-35	1	33186	202.93	186.17	1	403140			14903	340	12534	12893	14903	14903		
NIANPTATLLASCMMLDHLK	20	Unmodified	_NIANPTATLLASCMMLDHLK_			0	0	0	P51553	P51553	P51553	IDH3G	Isocitrate dehydrogenase [NAD] subunit gamma, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.707498	2213.10067	0.42967	0.0003174	2.4964	0.0018441	2.9261	0.0021615	739.043238057926	17.459	0.062056	17.459	17.433	17.495	0	399	22	1.0578662689527	0.014061585996056	1.0578662689527	639.514051071206	0	8.50067923398922						91	8	2	NaN	NaN	NaN	0.070951	1	34828	11.478	11.379	1	25596			14904	1188	12535	12894	14904	14904		
NICFTVWDVGGQDR	14	Unmodified	_NICFTVWDVGGQDR_			0	0	0	P18085	P18085	P18085	ARF4	ADP-ribosylation factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.885746	1665.75694	1.9691	0.001642	0.41908	0.00034946	2.3882	0.0019915	833.887517385898	15.198	0.19507	15.198	15.136	15.331	0	378	52	1.07192009927972	0.0341072184274172	1.07192009927972	432.892333814702	0	13.7741174877621						610	23	6	NaN	NaN	NaN	8.9956E-06	1	23497	104.04	97.295	1	214710			14905	751	12536	12895	14905	14905		
NICQFLLEVGIVK	13	Unmodified	_NICQFLLEVGIVK_			0	0	0	O60739	O60739	O60739	EIF1B	Eukaryotic translation initiation factor 1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.928894	1531.84324	0.96078	0.00073685	-0.4669	-0.00035808	0.49387	0.00037876	766.928806034889	19.428	0.03548	19.428	19.41	19.446	0	402	28	1.05585747106793	0.0180816768665149	1.05585747106793	426.712860538605	0	7.30750529353293						78	5	2	NaN	NaN	NaN	0.0077246	1	19499	43.306	41.004	1	16026			14906	277	12537	12896	14906	14906		
NICQFLVEIGLAK	13	Unmodified	_NICQFLVEIGLAK_			0	0	0	P41567	P41567	P41567	EIF1	Eukaryotic translation initiation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.913244	1503.81194	1.1696	0.00088063	-1.5636	-0.0011773	-0.394	-0.00029665	752.912457767568	19.774	0.088674	19.774	19.747	19.836	0	435	55	1.03374239103424	0.0362108052293146	1.03374239103424	417.845042518624	0	14.6366305395862						361	11	4	NaN	NaN	NaN	1.7345E-05	1	18635	108.4	100.4	1	110360			14907	1037	12538	12897	14907	14907		
NICVLAHVDHGK	12	Unmodified	_NICVLAHVDHGK_			0	0	0	Q7Z2Z2	Q7Z2Z2	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.903078	1361.6874	-0.25352	-0.00011533	-2.1671	-0.0009858	-2.4206	-0.0011011	454.901988037516	4.9997	0.11525	4.9997	4.9731	5.0883	0	858	22	0.747263789720611	0.0143631278163247	0.747263789720611	453.500565051221	0	8.71671646640539						125	14	3	NaN	NaN	NaN	0.027052	1	14256	35.33	33.53	1	28234			14908	2130	12539	12898	14908	14908		
NIDDGTSDRPYSHALVAGIDR	21	Unmodified	_NIDDGTSDRPYSHALVAGIDR_			0	0	1	P61353	P61353	P61353	RPL27	60S ribosomal protein L27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.036605	2271.08799	1.4371	0.0010893	0.77835	0.00059002	2.2154	0.0016794	758.371592718089	8.5293	0.15963	8.5293	8.485	8.6446	0	567	55	0.944945209309785	0.0364468926238521	0.944945209309785	571.158737029904	0	22.0298076064212						555	19	6	NaN	NaN	NaN	1.3231E-07	1	35373	101.62	93.624	1	255270			14909	1343	12540	12899	14909	14909		
NIDEHANEDVER	12	Unmodified	_NIDEHANEDVER_			0	0	0	P61026	P61026	P61026	RAB10	Ras-related protein Rab-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.821126	1439.6277	3.0112	0.0021705	-2.3542	-0.001697	0.65695	0.00047354	720.819453268596	3.0311	0.40783	3.0311	2.8627	3.2705	0	534	58	0.967195187796614	0.0384264728149466	0.967195187796614	391.105167768616	0	15.5385306778493						685	47	4	NaN	NaN	NaN	0.00049906	1	16652	66.953	61.457	1	187680			14910	1325	12541	12900	14910	14910		
NIDEHANEDVER	12	Unmodified	_NIDEHANEDVER_			0	0	0	P61026	P61026	P61026	RAB10	Ras-related protein Rab-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.883176	1439.6277	0.084805	4.0781E-05	1.4885	0.00071581	1.5733	0.00075659	480.883758937875	3.0311	0.19508	3.0311	2.969	3.1641	0	801	46	0.78619514174348	0.0306924975530096	0.78619514174348	476.867951734229	0	18.6165846932784						468	23	4	NaN	NaN	NaN	0.0022786	1	16653	47.334	35.979	1	118900			14911	1325	12541	12900	14911	14911		
NIDINDVTPNCR	12	Unmodified	_NIDINDVTPNCR_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.838265	1429.66198	1.8426	0.001319	3.5747	0.0025589	5.4173	0.0038779	716.342272153469	8.4229	0.2572	8.4229	8.3342	8.5914	0	507	55	0.985374541851584	0.0363210277631717	0.985374541851584	398.482772256811	0	14.6881243827235						913	30	5	NaN	NaN	NaN	0.052861	1	16372	30.349	23.827	1	316250			14912	1369	12542	12901	14912	14912		
NIDNPALADIYTEHAHQVVVAK	22	Unmodified	_NIDNPALADIYTEHAHQVVVAK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	605.315757	2417.23392	1.2171	0.00073675	-0.48626	-0.00029434	0.73087	0.00044241	605.566366968259	10.95	0.20398	10.95	10.844	11.048	0	597	37	0.924688525662974	0.024324866464508	0.924688525662974	744.944221549154	0	19.5965108355789						542	24	4	NaN	NaN	NaN	0.00047114	1	36432	103.17	101.75	1	279710			14913	300	12543	12902	14913	14913		
NIEDVIAQGIGK	12	Unmodified	_NIEDVIAQGIGK_			0	0	0	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.845884	1255.67722	1.4568	0.00091612	1.5431	0.00097035	2.9999	0.0018865	628.846330104952	13.762	0.39014	13.762	13.673	14.063	0	558	94	0.951016745717027	0.0627219108989425	0.951016745717027	385.098756817591	0	25.3982172461068						1234	45	2	NaN	NaN	NaN	0.00027969	1	11093	110.88	73.293	1	1873200			14914	529	12544	12903	14914	14914		
NIEEHASADVEK	12	Unmodified	_NIEEHASADVEK_			0	0	0	P61006	P61006	P61006	RAB8A	Ras-related protein Rab-8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.317688	1340.62082	2.4146	0.001621	-0.55164	-0.00037033	1.863	0.0012506	671.317211677566	3.1109	0.27483	3.1109	3.0755	3.3503	0	558	55	0.951016745717027	0.0364065447798646	0.951016745717027	384.83325054804	0	14.7320738903444						538	32	4	NaN	NaN	NaN	0.0040606	1	13604	58.476	38.243	1	139650			14915	1319	12545	12904	14915	14915		
NIEEHASADVEK	12	Unmodified	_NIEEHASADVEK_			0	0	0	P61006	P61006	P61006	RAB8A	Ras-related protein Rab-8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.880884	1340.62082	0.38816	0.00017385	2.086	0.00093428	2.4742	0.0011081	447.881661646006	3.1109	0.097548	3.1109	3.0843	3.1818	0	756	28	0.816857749704129	0.0183796540051641	0.816857749704129	495.81399242443	0	11.1560300859982						138	12	3	NaN	NaN	NaN	0.029773	1	13606	45.939	30.358	1	31572			14916	1319	12545	12904	14916	14916		
NIEELQQQNQR	11	Unmodified	_NIEELQQQNQR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.349854	1398.68515	2.4788	0.001736	-1.6548	-0.001159	0.82398	0.00057707	700.348498046115	4.4233	0.20391	4.4233	4.3879	4.5918	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	394.483341765303	0	8.17083353674087						307	24	3	NaN	NaN	NaN	2.0491E-07	1	15403	104.39	90.596	1	102450			14917	667	12546	12905	14917	14917		
NIEIDSPYEISR	12	Unmodified	_NIEIDSPYEISR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.356813	1434.69907	2.3227	0.0016686	-0.38139	-0.00027397	1.9414	0.0013946	718.356533426815	10.871	0.2128	10.871	10.8	11.012	0	474	70	1.00756305028564	0.0463749432889504	1.00756305028564	407.442051933222	0	18.7532701269465						929	25	5	NaN	NaN	NaN	5.3902E-12	1	16532	157.77	144.49	1	540970			14918	518	12547	12906	14918	14918		
NIELICQENEGENDPVLQR	19	Unmodified	_NIELICQENEGENDPVLQR_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1135.53951	2269.06447	1.5055	0.0017096	-0.56668	-0.00064349	0.93886	0.0010661	1136.04046542379	11.82	0.13303	11.82	11.766	11.899	0	132	82	1.23554629282893	0.053599836044383	1.23554629282893	497.876341647751	0	21.5986162862386						893	16	4	NaN	NaN	NaN	4.0203E-22	1	35359	213.29	211.05	1	326300			14919	1863	12548	12907	14919	14919		
NIELICQENEGENDPVLQR	19	Unmodified	_NIELICQENEGENDPVLQR_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.362101	2269.06447	0.67273	0.0005095	1.2053	0.00091281	1.878	0.0014223	757.697323993149	11.82	0.097566	11.82	11.766	11.864	0	522	46	0.975277694896658	0.0302989286426463	0.975277694896658	589.495970666726	0	18.3138571135386						382	12	4	NaN	NaN	NaN	2.5136E-07	1	35360	97.949	95.055	1	85154			14920	1863	12548	12907	14920	14920		
NIEVMNSFELLSHTVEEK	18	Unmodified	_NIEVMNSFELLSHTVEEK_			0	0	0	Q7L5N1	Q7L5N1	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.017383	2118.03032	0.40515	0.00028645	-1.0293	-0.00072776	-0.62418	-0.0004413	707.351105547552	16.546	0.1596	16.546	16.502	16.661	0	507	28	0.985374541851584	0.0181692995022645	0.985374541851584	595.857117920626	0	10.9869962904792						299	19	5	NaN	NaN	NaN	0.030752	1	33586	29.217	24.663	1	59795			14921	2120	12549	12908	14921	14921		
NIFAILQSVK	10	Unmodified	_NIFAILQSVK_			0	0	0	Q6P1J9	Q6P1J9	Q6P1J9	CDC73	Parafibromin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.839874	1131.66519	0.39288	0.0002227	-1.3394	-0.00075921	-0.94649	-0.00053651	566.839158453129	17.53	0.1685	17.53	17.477	17.646	0	588	55	0.93076847747433	0.0364923641742785	0.93076847747433	377.348447307754	0	14.7945888725404						502	20	4	NaN	NaN	NaN	0.00072042	1	7587	81.163	50.245	1	160640			14922	2056	12550	12909	14922	14922		
NIFHLFHDVVPTYHK	15	Unmodified	_NIFHLFHDVVPTYHK_			0	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	467.496699	1865.95769	-1.2297	-0.00057487	-0.4466	-0.00020878	-1.6763	-0.00078365	467.747369973872	12.875	0.10641	12.875	12.83	12.937	0	786	22	0.796423123669906	0.0143151894202939	0.796423123669906	642.692288175216	0	11.5519772979413						201	13	4	NaN	NaN	NaN	0.070337	1	28848	13.175	13.175	1	42240			14923	193	12551	12910	14923	14923		
NIFIECTGTDFTK	13	Unmodified	_NIFIECTGTDFTK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.366324	1544.71809	1.6318	0.001262	0.89966	0.00069577	2.5315	0.0019577	773.366004581729	12.236	0.22174	12.236	12.112	12.334	0	426	61	1.03977710643793	0.0402009276493935	1.03977710643793	420.18278854532	0	16.2455374110887						537	26	4	NaN	NaN	NaN	0.00017206	1	19872	78.043	64.244	1	184200			14924	3036	12552	12911	14924	14924		
NIFLLFK	7	Unmodified	_NIFLLFK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.776014	893.537475	-2.5966	-0.0011627	0.13871	6.2112E-05	-2.4579	-0.0011006	447.776063412387	16.865	0.18624	16.865	16.821	17.007	0	774	28	0.804600385996946	0.0183950017446732	0.804600385996946	327.241995822409	0	7.48149912533898						298	22	3	NaN	NaN	NaN	0.032517	1	2239	37.608	22.943	1	102820			14925	1273	12553	12912	14925	14925		
NIGDLLSSSIDR	12	Unmodified	_NIGDLLSSSIDR_			0	0	0	Q70UQ0	Q70UQ0	Q70UQ0	IKBIP	Inhibitor of nuclear factor kappa-B kinase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.338424	1288.66229	1.4978	0.00096658	-0.67448	-0.00043527	0.82331	0.00053131	645.338225555212	13.886	0.16846	13.886	13.815	13.983	0	510	31	0.983355730988811	0.0201895069753196	0.983355730988811	398.083033193285	0	8.1731360505018						294	20	3	NaN	NaN	NaN	0.0061502	1	12022	45.939	33.344	1	83956			14926	2103	12554	12913	14926	14926		
NIGENEGGIDK	11	Unmodified	_NIGENEGGIDK_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.275292	1144.53603	1.5732	0.00090186	0.56845	0.00032588	2.1416	0.0012277	573.27567607796	3.6076	0.25708	3.6076	3.5544	3.8115	0	645	37	0.892219381832517	0.0243822699655701	0.892219381832517	361.671056182769	0	9.88362448758875						392	30	3	NaN	NaN	NaN	0.024386	1	7908	37.749	19.347	1	130470			14927	1543	12555	12914	14927	14927		
NIGISAHIDSGK	12	Unmodified	_NIGISAHIDSGK_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.322576	1210.6306	1.6399	0.00099431	0.32745	0.00019854	1.9673	0.0011928	606.322854547012	5.5937	0.10644	5.5937	5.5494	5.6559	0	546	31	0.959108205975751	0.0202230534711471	0.959108205975751	388.532407024153	0	8.19230989117574						162	13	2	NaN	NaN	NaN	0.0002957	1	9755	58.476	51.326	1	52769			14928	2612	12556	12915	14928	14928		
NIGVDNPAAK	10	Unmodified	_NIGVDNPAAK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.766906	997.519259	1.1904	0.00059491	0.24923	0.00012456	1.4396	0.00071947	499.766962583066	4.2992	0.30147	4.2992	4.1839	4.4854	0	711	55	0.847456455381371	0.0366852964336388	0.847456455381371	344.127922411049	0	14.8968537139297						733	35	4	NaN	NaN	NaN	0.018488	1	4234	36.211	24.562	1	470910			14929	1461	12557	12916	14929	14929		
NIGWGTDQGIGGFGEEPGIK	20	Unmodified	_NIGWGTDQGIGGFGEEPGIK_			0	0	0	Q9Y5U9	Q9Y5U9	Q9Y5U9	IER3IP1	Immediate early response 3-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.49216	2030.96977	2.0402	0.0020739	0.2322	0.00023603	2.2724	0.0023099	1016.99393982657	14.356	0.19505	14.356	14.24	14.435	-1.7764E-15	225	85	1.17390432875292	0.0557875654316762	1.17390432875292	473.374455613868	0	22.4962186180003						966	23	4	NaN	NaN	NaN	7.5824E-08	1	32168	98.328	89.522	1	316530			14930	3443	12558	12917	14930	14930		
NIHLNLDR	8	Unmodified	_NIHLNLDR_			0	0	0	Q9Y5S9	Q9Y5S9	Q9Y5S9	RBM8A	RNA-binding protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.775065	993.535577	0.47062	0.00023426	0.59022	0.0002938	1.0608	0.00052806	497.775612908033	5.9041	0.27495	5.9041	5.8509	6.1259	0	684	52	0.86578508874114	0.0346063393446338	0.86578508874114	351.589832511142	0	14.0534148857828						517	32	5	NaN	NaN	NaN	0.012198	1	4139	56.378	33.069	1	294960			14931	3442	12559	12918	14931	14931		
NIHPWVK	7	Unmodified	_NIHPWVK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.253237	892.491922	0.94773	0.00042388	0.37432	0.00016741	1.322	0.00059129	447.253621530771	4.3524	0.29261	4.3524	4.3081	4.6007	0	738	46	0.829104889055312	0.0306029596118851	0.829104889055312	337.214289171061	0	12.4468633682897						558	34	4	NaN	NaN	NaN	0.020595	1	2217	69.093	26.258	1	527790			14932	922	12560	12919	14932	14932		
NIHSSDWPK	9	Unmodified	_NIHSSDWPK_			0	0	0	Q9Y224	Q9Y224	Q9Y224	C14orf166	UPF0568 protein C14orf166	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.26453	1082.51451	1.7033	0.00092362	1.2789	0.00069352	2.9822	0.0016171	542.265364242241	3.51	0.29272	3.51	3.4301	3.7228	0	621	37	0.908462957275599	0.0243484786239944	0.908462957275599	368.506617682505	0	9.876655323791						297	34	3	NaN	NaN	NaN	0.0059204	1	6264	81.163	62.761	1	65854			14933	3324	12561	12920	14933	14933		
NIIHGSDSVESAEK	14	Unmodified	_NIIHGSDSVESAEK_			0	0	0	P15531	P15531	P15531	NME1	Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.362627	1484.7107	3.3137	0.0024633	-0.90035	-0.00066929	2.4134	0.001794	743.362148166208	3.9888	0.42562	3.9888	3.9179	4.3435	0	480	166	1.00353128488872	0.1111733215958	1.00353128488872	405.681112611443	0	44.9422130399206						1703	49	5	NaN	NaN	NaN	7.7349E-12	1	18048	166.71	134.76	1	1455000			14934	714	12562	12921	14934	14934		
NIIHGSDSVESAEK	14	Unmodified	_NIIHGSDSVESAEK_			0	0	0	P15531	P15531	P15531	NME1	Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.910843	1484.7107	0.89805	0.00044535	1.7688	0.00087716	2.6668	0.0013225	495.911771665004	3.9888	0.41678	3.9888	3.9445	4.3613	0	762	49	0.812773098473386	0.0326817653854051	0.812773098473386	492.846552067764	0	19.8174563306023						825	48	5	NaN	NaN	NaN	8.4461E-06	1	18049	156.73	138.39	1	655420			14935	714	12562	12921	14935	14935		
NIIHGSDSVK	10	Unmodified	_NIIHGSDSVK_			0	0	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	357.192734	1068.55637	-0.32555	-0.00011628	1.2169	0.00043467	0.89135	0.00031838	357.193201706	2.7296	0.2217	2.7296	2.703	2.9247	0	849	25	0.753417699604308	0.0164092837353766	0.753417699604308	458.491424255288	0	9.98584964859901						242	26	3	NaN	NaN	NaN	0.052767	1	5925	22.044	19.445	1	54151			14936	805	12563	12922	14936	14936		
NIIHGSDSVK	10	Unmodified	_NIIHGSDSVK_			0	0	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.285463	1068.55637	2.7672	0.0014812	-0.85437	-0.00045733	1.9128	0.0010239	535.285140638859	2.7296	0.48771	2.7296	2.6941	3.1818	0	609	46	0.916577990479294	0.0304250551653156	0.916577990479294	371.859413610016	0	12.3435684582721						947	56	4	NaN	NaN	NaN	0.00048875	1	5927	85.716	44.691	1	620530			14937	805	12563	12922	14937	14937		
NIIIALIDR	9	Unmodified	_NIIIALIDR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.826766	1039.63898	0.13261	6.9065E-05	-1.7412	-0.00090685	-1.6086	-0.00083779	520.825871045092	15.81	0.17735	15.81	15.766	15.943	0	678	64	0.869855008346864	0.0427074914012542	0.869855008346864	353.028601308321	0	17.3327345478246						788	21	3	NaN	NaN	NaN	0.0022421	1	5228	88.921	61.184	1	375780			14938	2605	12564	12923	14938	14938		
NIIQQAIDAGEVPSYNAFVK	20	Unmodified	_NIIQQAIDAGEVPSYNAFVK_			0	0	0	Q8WXX5	Q8WXX5	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1089.06549	2176.11643	0.5872	0.0006395	0.43515	0.00047391	1.0224	0.0011134	1089.56734589685	17.415	0.1862	17.415	17.371	17.557	0	141	58	1.2295923935727	0.0377028745088666	1.2295923935727	495.605948532325	0	15.1967180189434						595	22	5	NaN	NaN	NaN	8.8903E-11	1	34399	118.87	117.25	1	147210			14939	2398	12565	12924	14939	14939		
NIISLLNVFTPQK	13	Unmodified	_NIISLLNVFTPQK_			0	0	0	P45984;P53779	P45984	P45984	MAPK9;MAPK10	Mitogen-activated protein kinase 9;Mitogen-activated protein kinase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.935034	1485.85551	0.13659	0.00010162	-0.19474	-0.00014488	-0.058152	-4.3261E-05	743.934761612269	19.649	0.062091	19.649	19.614	19.676	0	453	25	1.02166545906632	0.0161092490285764	1.02166545906632	413.008976169411	0	6.51217518328417						81	8	2	NaN	NaN	NaN	0.00038926	1	18111	61.194	49.176	1	18251			14940	1073	12566	12925	14940	14940		
NIIVFYGSQTGTAEEFANR	19	Unmodified	_NIIVFYGSQTGTAEEFANR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.01854	2116.02253	1.553	0.0016446	-0.68509	-0.00072552	0.8679	0.00091912	1059.52007038801	13.948	0.12413	13.948	13.921	14.045	0	180	64	1.203763835057	0.0417459744037174	1.203763835057	485.282750924399	0	16.8293819008911						475	15	4	NaN	NaN	NaN	3.329E-07	1	33562	80.128	78.948	1	82931			14941	728	12567	12926	14941	14941		
NILDFPQHVSPSK	13	Unmodified	_NILDFPQHVSPSK_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.596419	1480.76743	-1.9125	-0.0009459	-1.6268	-0.00080459	-3.5392	-0.0017505	494.595802514267	10.073	0.10641	10.073	10.01	10.117	-1.7764E-15	792	22	0.792332785124922	0.0143191751131978	0.792332785124922	480.463839179657	0	8.68302558966826						97	13	2	NaN	NaN	NaN	0.061895	1	17928	11.482	6.6535	1	26618			14942	1225	12568	12927	14942	14942		
NILDFPQHVSPSK	13	Unmodified	_NILDFPQHVSPSK_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.39099	1480.76743	1.7124	0.0012696	-1.8268	-0.0013543	-0.11437	-8.4792E-05	741.389476554102	10.046	0.12412	10.046	9.9839	10.108	0	426	25	1.03977710643793	0.0160892438574902	1.03977710643793	420.34395561377	0	6.50429439542165						202	15	2	NaN	NaN	NaN	0.00051125	1	17931	65.408	35.059	1	89778			14943	1225	12568	12927	14943	14943		
NILEESLCELVAK	13	Unmodified	_NILEESLCELVAK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.397624	1516.78069	1.0378	0.00078809	1.0481	0.00079592	2.0859	0.001584	759.398836667735	17.938	0.1596	17.938	17.885	18.045	0	381	85	1.06991323971056	0.0562580332957809	1.06991323971056	432.431789310153	0	22.738069871671						842	19	5	NaN	NaN	NaN	3.9902E-08	1	19037	126.48	90.269	1	586670			14944	1465	12569	12928	14944	14944		
NILETLLQMK	10	Unmodified	_NILETLLQMK_			0	0	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.844299	1201.67404	-0.55174	-0.00033206	1.7272	0.0010395	1.1754	0.00070742	601.845471009437	19.117	0.08866	19.117	19.082	19.171	0	567	61	0.944945209309785	0.0405077704306123	0.944945209309785	382.827161071908	0	16.4109776974593						372	11	4	NaN	NaN	NaN	0.0028752	1	9522	60.892	27.496	1	104790			14945	1472	12570	12929	14945	14945		
NILETLLQMK	10	Oxidation (M)	_NILETLLQM(Oxidation (M))K_	NILETLLQM(1)K	NILETLLQM(53)K	0	1	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.841756	1217.66896	-0.34912	-0.00021291	-1.3819	-0.00084275	-1.731	-0.0010557	609.841407606824	16.697	0.23941	16.697	16.581	16.821	0	573	40	0.940896116921038	0.0263282200540531	0.940896116921038	381.1299085968	0	10.6648033956758						341	28	3	NaN	NaN	NaN	0.035907	1	9962	52.591	26.012	1	86749			14946	1472	12570	12930	14946	14946	527	
NILFVITKPDVYK	13	Unmodified	_NILFVITKPDVYK_			0	0	1	E9PAV3;Q13765;Q9BZK3	E9PAV3	E9PAV3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.304465	1548.89157	0.78247	0.00040477	-0.74398	-0.00038486	0.038488	1.991E-05	517.303995104225	13.558	0.097536	13.558	13.504	13.602	0	660	97	0.882057989648486	0.0651459254929563	0.882057989648486	534.654856043978	0	39.48786341153						505	12	4	NaN	NaN	NaN	0.00025835	1	20019	71.066	65.367	1	137950			14947	46	12571	12931	14947	14947		
NILFVITKPDVYK	13	Unmodified	_NILFVITKPDVYK_			0	0	1	E9PAV3;Q13765;Q9BZK3	E9PAV3	E9PAV3	NACA;NACAP1	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha;Putative nascent polypeptide-associated complex subunit alpha-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.453059	1548.89157	3.0667	0.0023781	1.1404	0.00088429	4.207	0.0032624	775.454095526456	13.558	0.23939	13.558	13.496	13.735	0	351	52	1.08996939197032	0.0340696336086099	1.08996939197032	440.455375111064	0	13.767499676161						1014	28	5	NaN	NaN	NaN	1.2821E-10	1	20020	200.06	171.41	1	1141500			14948	46	12571	12931	14948	14948		
NILHQGQEAILQR	13	Unmodified	_NILHQGQEAILQR_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.282834	1518.82667	-1.1424	-0.00057951	0.51393	0.00026071	-0.62845	-0.0003188	507.282981008174	8.0858	0.053308	8.0858	8.068	8.1213	0	765	28	0.810730346695089	0.018384767783428	0.810730346695089	491.506031371537	0	11.145782673309						124	7	3	NaN	NaN	NaN	3.5708E-05	1	19106	92.445	84.887	1	27901			14949	2491	12572	12932	14949	14949		
NILHQGQEAILQR	13	Unmodified	_NILHQGQEAILQR_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.420614	1518.82667	2.0584	0.0015653	-0.21597	-0.00016423	1.8425	0.001401	760.420411367367	8.0858	0.088777	8.0858	8.0502	8.139	0	393	31	1.0618830335572	0.0200810554330217	1.0618830335572	429.180960255249	0	8.11615439867461						205	11	4	NaN	NaN	NaN	0.0002638	1	19108	78.043	65.461	1	64534			14950	2491	12572	12932	14950	14950		
NILIDFTK	8	Unmodified	_NILIDFTK_			0	0	0	P19367;P52789	P19367;P52789	P52789	HK1;HK2	Hexokinase-1;Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.279118	962.543683	-0.85308	-0.00041142	-1.8461	-0.00089035	-2.6992	-0.0013018	482.278254725788	13.07	0.14185	13.07	13.008	13.15	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	345.125824179744	0	6.62225330303858						182	17	3	NaN	NaN	NaN	0.062689	1	3499	47.349	35.282	1	47246			14951	1223;765	12573	12933	14951	14951		
NILLTIGSYK	10	Unmodified	_NILLTIGSYK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.331882	1120.64921	0.47034	0.00026402	-0.68605	-0.0003851	-0.21571	-0.00012108	561.331257004684	13.159	0.11529	13.159	13.114	13.23	0	591	73	0.928742107665821	0.0486767350885208	0.928742107665821	376.571465509964	0	19.7366624353809						461	14	3	NaN	NaN	NaN	0.0061715	1	7292	72.042	47.191	1	136190			14952	867	12574	12934	14952	14952		
NILLTNEQLESAR	13	Unmodified	_NILLTNEQLESAR_			0	0	0	Q9H9B4	Q9H9B4	Q9H9B4	SFXN1	Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.904462	1499.79437	1.4244	0.0010696	-0.33088	-0.00024846	1.0935	0.00082112	750.904583160578	10.285	0.12414	10.285	10.241	10.365	0	447	97	1.02569221487577	0.0643304084938585	1.02569221487577	414.601234942863	0	26.0033823198734						673	15	4	NaN	NaN	NaN	4.6741E-08	1	18524	126.48	97.833	1	262070			14953	2933	12575	12935	14953	14953		
NILPFDHTR	9	Unmodified	_NILPFDHTR_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.795998	1111.57744	1.1265	0.00062722	-2.021	-0.0011253	-0.89448	-0.00049804	556.793709405935	7.997	0.15976	7.997	7.9527	8.1124	0	609	49	0.916577990479294	0.0324646425332216	0.916577990479294	371.676211250941	0	13.1645484199923						291	19	3	NaN	NaN	NaN	0.028657	1	7035	43.734	33.032	1	88062			14954	1556	12576	12936	14954	14954		
NILQLHDLTTGALLK	15	Unmodified	_NILQLHDLTTGALLK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.657678	1648.95121	-1.1042	-0.00060802	0.14345	7.8991E-05	-0.96072	-0.00052903	550.657820261277	14.888	0.09752	14.888	14.861	14.959	0	699	34	0.85560534332665	0.0224047758340703	0.85560534332665	518.342156549541	0	13.5732436846263						276	12	4	NaN	NaN	NaN	0.00073125	1	23010	44.82	35.077	1	109220			14955	1105	12577	12937	14955	14955		
NILQLHDLTTGALLK	15	Unmodified	_NILQLHDLTTGALLK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.482879	1648.95121	1.3031	0.0010757	1.9552	0.001614	3.2583	0.0026897	825.484658399183	14.897	0.11525	14.897	14.852	14.967	0	225	43	1.17390432875292	0.0279014290845747	1.17390432875292	474.118269673293	0	11.2688717086884						337	14	4	NaN	NaN	NaN	5.4738E-17	1	23011	123.99	98.378	1	157360			14956	1105	12577	12937	14956	14956		
NINADEAAAMGAVYQAAALSK	21	Unmodified	_NINADEAAAMGAVYQAAALSK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.0124	2078.01025	0.41428	0.00043086	1.1818	0.0012291	1.596	0.0016599	1040.51603705291	16.351	0.12413	16.351	16.298	16.422	0	153	37	1.22165005014568	0.0238237664367487	1.22165005014568	492.55209384495	0	9.60540708060728						243	15	3	NaN	NaN	NaN	0.0012518	1	32991	42.977	41.608	1	47578			14957	3410	12578	12938	14957	14957		
NINADEAAAMGAVYQAAALSK	21	Unmodified	_NINADEAAAMGAVYQAAALSK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.677361	2078.01025	-0.0040857	-2.8341E-06	1.818	0.0012611	1.8139	0.0012583	694.013627675676	16.342	0.062052	16.342	16.315	16.377	0	444	19	1.02770517576159	0.0120769319679197	1.02770517576159	621.532376641967	0	7.3038497864934						94	8	3	NaN	NaN	NaN	0.057646	1	32992	24.832	24.313	1	16981			14958	3410	12578	12938	14958	14958		
NINDAWVCTNDMFR	14	Unmodified	_NINDAWVCTNDMFR_			0	0	0	P61970	P61970	P61970	NUTF2	Nuclear transport factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.382513	1754.75047	2.5811	0.0022672	0.84517	0.00074239	3.4263	0.0030096	878.38374826113	14.577	0.17733	14.577	14.489	14.666	0	360	61	1.08395544855938	0.0400846886199586	1.08395544855938	437.569577299843	0	16.1813294807847						776	21	5	NaN	NaN	NaN	1.5047E-11	1	26019	156.73	150.7	1	286480			14959	1359	12579	12939	14959	14959		
NINSINFDNPVYQK	14	Unmodified	_NINSINFDNPVYQK_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.415194	1664.81583	2.9433	0.002453	-3.5479	-0.0029568	-0.6046	-0.00050388	833.41142094646	11.314	0.22174	11.314	11.208	11.429	0	360	43	1.08395544855938	0.0280708775163501	1.08395544855938	437.754836252773	0	11.3364090811784						654	26	5	NaN	NaN	NaN	2.6296E-11	1	23477	138.71	121.95	1	291270			14960	491	12580	12940	14960	14960		
NINTFVETPVQK	12	Unmodified	_NINTFVETPVQK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.372266	1388.72998	0.83617	0.00058145	-2.3475	-0.0016324	-1.5113	-0.0010509	695.371298400276	9.2568	0.097529	9.2568	9.2036	9.3011	0	495	55	0.993446994398923	0.0363009499025385	0.993446994398923	401.860717330241	0	14.684151091956						174	12	3	NaN	NaN	NaN	0.014908	1	15110	45.939	18.993	1	43317			14961	1074	12581	12941	14961	14961		
NIPEGSHQYELLK	13	Unmodified	_NIPEGSHQYELLK_			0	0	0	Q7L9L4;Q9H8S9	Q7L9L4	Q7L9L4	MOB1B;MOB1A	MOB kinase activator 1B;MOB kinase activator 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.39373	1526.77291	2.3784	0.001818	-1.6844	-0.0012875	0.69399	0.00053048	764.894001301909	7.2255	0.22169	7.2255	7.1102	7.3319	0	378	43	1.07192009927972	0.0280863584131199	1.07192009927972	433.217279347204	0	11.3511219601892						311	26	2	NaN	NaN	NaN	0.0038056	1	19324	50.09	40.347	1	133080			14962	2122	12582	12942	14962	14962		
NIPPYFVALVPQEEELDDQK	20	Unmodified	_NIPPYFVALVPQEEELDDQK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.061757	2343.16344	0.22689	0.00017744	-0.8342	-0.0006524	-0.60731	-0.00047496	782.395420201184	17.894	0.17732	17.894	17.814	17.991	0	585	103	0.932794566565362	0.0689014419102357	0.932794566565362	563.709066337507	0	41.6387154049803						942	21	5	NaN	NaN	NaN	0.0003523	1	35983	84.58	79.498	1	210120			14963	673	12583	12943	14963	14963		
NIPPYFVALVPQEEELDDQK	20	Unmodified	_NIPPYFVALVPQEEELDDQK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.061757	2343.16344	0.87971	0.00068799	-0.58679	-0.00045891	0.29292	0.00022908	782.39445256627	17.894	0.20391	17.894	17.805	18.009	0	408	64	1.0518390438467	0.0422138885352086	1.0518390438467	635.650362610872	0	25.510817184051						470	24	3	NaN	NaN	NaN	0.028151	1	35984	38.839	37.823	1	82665			14964	673	12583	12943	14964	14964		
NIPPYFVALVPQEEELDDQK	20	Unmodified	_NIPPYFVALVPQEEELDDQK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1172.589	2343.16344	1.0775	0.0012634	-0.68589	-0.00080426	0.39159	0.00045918	1173.08938555658	17.903	0.25712	17.903	17.796	18.053	0	96	91	1.2593374219024	0.0594289997864927	1.2593374219024	507.365534314533	0	23.942928802118						1740	30	5	NaN	NaN	NaN	2.3661E-05	1	35985	71.912	70.064	1	448910			14965	673	12583	12943	14965	14965		
NIQFEAFHVFK	11	Unmodified	_NIQFEAFHVFK_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.575067	1378.70337	-2.6794	-0.0012341	0.51478	0.0002371	-2.1646	-0.00099698	460.575117683983	13.336	0.079842	13.336	13.309	13.389	0	789	22	0.794378096728713	0.0143171820587036	0.794378096728713	482.033640744245	0	8.68775639884228						123	10	3	NaN	NaN	NaN	0.041723	1	14775	16.652	13.55	1	26132			14966	3371	12584	12944	14966	14966		
NIQFEAFHVFK	11	Unmodified	_NIQFEAFHVFK_			0	0	0	Q9Y376	Q9Y376	Q9Y376	CAB39	Calcium-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.358962	1378.70337	1.257	0.00086779	2.4851	0.0017156	3.7422	0.0025834	690.36074993732	13.354	0.18625	13.354	13.274	13.46	0	426	88	1.03977710643793	0.0584081814505198	1.03977710643793	420.631912646679	0	23.628472800207						509	22	4	NaN	NaN	NaN	0.0044794	1	14778	81.099	50.181	1	169890			14967	3371	12584	12944	14967	14967		
NIQVSHQEFSK	11	Unmodified	_NIQVSHQEFSK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.833308	1315.65206	2.534	0.0016695	-1.4075	-0.00092733	1.1264	0.00074213	658.8323374982	4.1041	0.24831	4.1041	4.0243	4.2726	0	513	76	0.981336640919867	0.0505192007893855	0.981336640919867	397.179226103437	0	20.4467827208449						781	29	4	NaN	NaN	NaN	0.0096696	1	12838	65.879	52.605	1	322890			14968	2370	12585	12945	14968	14968		
NISFTVWDVGGQDK	14	Unmodified	_NISFTVWDVGGQDK_			0	0	0	P61204;P84077	P61204	P61204	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.383362	1564.75217	1.5665	0.0012272	0.047498	3.7209E-05	1.614	0.0012644	783.382606834696	14.914	0.38131	14.914	14.781	15.163	0	414	109	1.04781950764076	0.0722719653314001	1.04781950764076	423.384633167946	0	29.2023953620188						1412	44	6	NaN	NaN	NaN	7.6212E-24	1	20487	225.89	178.33	1	772670			14969	1334	12586	12946	14969	14969		
NISHVHTMDFSPR	13	Unmodified	_NISHVHTMDFSPR_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.249025	1539.72525	0.28234	0.0001452	1.5565	0.00080044	1.8389	0.00094563	514.249715556234	5.4962	0.18611	5.4962	5.4254	5.6115	0	702	43	0.853568545818287	0.0285290397944454	0.853568545818287	517.413369723787	0	17.2936393771128						279	22	3	NaN	NaN	NaN	0.046114	1	19713	43.306	42.855	1	72693			14970	3431	12587	12947	14970	14970		
NISMSVEGDYTYLR	14	Unmodified	_NISMSVEGDYTYLR_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.387787	1646.76102	2.1924	0.0018074	1.6475	0.0013582	3.8398	0.0031655	824.38985439235	12.458	0.19505	12.458	12.414	12.609	0	339	34	1.09798411722691	0.0220329079288653	1.09798411722691	443.460414297625	0	8.8987830743792						365	23	4	NaN	NaN	NaN	0.00028835	1	22940	70.195	48.191	1	64960			14971	3430	12588	12948	14971	14971		
NITLDDASAPR	11	Unmodified	_NITLDDASAPR_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.798934	1171.58332	1.2085	0.00070915	0.48278	0.00028329	1.6913	0.00099244	586.799025646953	6.6757	0.21282	6.6757	6.587	6.7998	0	612	61	0.914549654013882	0.0405639373344322	0.914549654013882	370.620981332707	0	16.4385238085471						532	25	4	NaN	NaN	NaN	0.00084199	1	8647	81.099	54.642	1	166400			14972	344	12589	12949	14972	14972		
NITRPFEDQTSLEFFSK	17	Unmodified	_NITRPFEDQTSLEFFSK_			0	0	1	Q9H7B2	Q9H7B2	Q9H7B2	RPF2	Ribosome production factor 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.009217	2058.00582	-0.076051	-5.2248E-05	-1.3363	-0.00091808	-1.4124	-0.00097033	687.342520027962	13.788	0.079786	13.788	13.744	13.824	0	666	43	0.877991458330206	0.0284657258071274	0.877991458330206	531.023212665143	0	17.2165241763215						316	10	4	NaN	NaN	NaN	6.2941E-05	1	32670	61.23	54.708	1	96221			14973	2914	12590	12950	14973	14973		
NITRPFEDQTSLEFFSK	17	Unmodified	_NITRPFEDQTSLEFFSK_			0	0	1	Q9H7B2	Q9H7B2	Q9H7B2	RPF2	Ribosome production factor 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.01019	2058.00582	1.763	0.0018159	0.14752	0.00015195	1.9105	0.0019679	1030.01042733962	13.788	0.11525	13.788	13.753	13.868	0	156	76	1.21966378336455	0.0496294717525472	1.21966378336455	491.782990492391	0	20.0111951899536						399	14	4	NaN	NaN	NaN	0.051534	1	32671	40.83	39.559	1	86490			14974	2914	12590	12950	14974	14974		
NITVIFHPLLR	11	Unmodified	_NITVIFHPLLR_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.900797	1321.78704	1.6535	0.0010945	1.3266	0.0008781	2.9802	0.0019726	661.901654113689	13.868	0.079818	13.868	13.824	13.903	0	432	25	1.035754240522	0.0160914648134829	1.035754240522	419.183585384836	0	6.5124308940413						141	10	3	NaN	NaN	NaN	0.00088061	1	13048	83.623	80.015	1	33261			14975	2471	12591	12951	14975	14975		
NITYLPAGQSVLLQLPQ	17	Unmodified	_NITYLPAGQSVLLQLPQ_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.019826	1854.0251	1.6631	0.0015434	-0.81932	-0.00076034	0.84382	0.00078308	928.52097875222	18.984	0.14187	18.984	18.94	19.082	0	255	76	1.15396378101328	0.0498959645511332	1.15396378101328	465.634867527344	0	20.1334749202572						863	17	5	NaN	NaN	NaN	8.843E-19	1	28579	200.82	170.75	1	740210			14976	960	12592	12952	14976	14976		
NIVDQIWSFGPR	12	Unmodified	_NIVDQIWSFGPR_			0	0	0	Q7Z2Z2	Q7Z2Z2	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.372601	1430.73065	0.75083	0.00053788	-1.3887	-0.00099486	-0.63791	-0.00045698	716.371724330397	17.699	0.12413	17.699	17.654	17.779	0	507	37	0.985374541851584	0.0242240595168645	0.985374541851584	398.479939151227	0	9.7960738300967						306	15	3	NaN	NaN	NaN	0.00011796	1	16421	99.276	65.85	1	70406			14977	2130	12593	12953	14977	14977		
NIVEAAAVR	9	Unmodified	_NIVEAAAVR_			0	0	0	P62854;Q5JNZ5	P62854	P62854	RPS26;RPS26P11	40S ribosomal protein S26;Putative 40S ribosomal protein S26-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.771991	941.529429	0.19078	9.0005E-05	1.6185	0.00076355	1.8093	0.00085356	471.77193906914	5.7179	0.16848	5.7179	5.6825	5.8509	0	714	82	0.845418525735192	0.0550930195244669	0.845418525735192	343.577945028381	0	22.3897937618104						382	20	2	NaN	NaN	NaN	0.034796	1	3091	46.447	22.871	1	124290			14978	1405	12594	12954	14978	14978		
NIVHNYSEAEIK	12	Unmodified	_NIVHNYSEAEIK_			0	0	0	Q9H201;Q9Y6I3	Q9H201;Q9Y6I3	Q9Y6I3	EPN3;EPN1	Epsin-3;Epsin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.859523	1415.70449	2.0048	0.0014211	0.5956	0.0004222	2.6004	0.0018433	708.859860803628	5.3366	0.15081	5.3366	5.2745	5.4254	0	444	31	1.02770517576159	0.0201310011285361	1.02770517576159	415.640436631952	0	8.1416911155502						261	18	3	NaN	NaN	NaN	0.00060487	1	15963	79.889	49.541	1	67483			14979	3466;2859	12595	12955	14979	14979		
NIVQHTTDSSLEEK	14	Unmodified	_NIVQHTTDSSLEEK_			0	0	0	Q9H501	Q9H501	Q9H501	ESF1	ESF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.894291	1599.77403	2.8887	0.0023136	-0.91979	-0.00073665	1.9689	0.0015769	800.893262710154	4.2637	0.062074	4.2637	4.2371	4.2992	0	363	40	1.08195024817156	0.0260747970563766	1.08195024817156	437.091632341216	0	10.5338259569681						111	8	3	NaN	NaN	NaN	0.0046252	1	21571	46.358	45.306	1	19774			14980	2898	12596	12956	14980	14980		
NIVVDDITEQKPEPQDDGK	19	Unmodified	_NIVVDDITEQKPEPQDDGK_			0	0	1	Q9Y4W2	Q9Y4W2	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.018329	2139.03316	1.238	0.00088397	-0.29424	-0.00021009	0.94379	0.00067388	714.352556040418	8.4495	0.097542	8.4495	8.414	8.5116	0	603	49	0.920633820089869	0.0324376543962731	0.920633820089869	556.672748915827	0	19.6138332604295						389	12	4	NaN	NaN	NaN	0.0026037	1	33862	39.82	35.266	1	86808			14981	3415	12597	12957	14981	14981		
NIYGNIEDLVVHIK	14	Unmodified	_NIYGNIEDLVVHIK_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.966512	1625.87771	-1.1099	-0.00060265	-1.4258	-0.00077416	-2.5357	-0.0013768	542.965711218263	16.679	0.14191	16.679	16.635	16.777	0	702	34	0.853568545818287	0.0224047758340703	0.853568545818287	517.169299115797	0	13.5748467673965						363	17	4	NaN	NaN	NaN	1.7697E-05	1	22369	110.52	95.547	1	142530			14982	49	12598	12958	14982	14982		
NIYLMDTSGK	10	Unmodified	_NIYLMDTSGK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.281531	1140.54851	0.4538	0.00025925	0.11071	6.3248E-05	0.56451	0.00032249	571.281956443163	8.7245	0.19532	8.7245	8.6357	8.831	0	651	28	0.888155670855968	0.018290507163651	0.888155670855968	360.038770859954	0	7.41456924016427						245	23	2	NaN	NaN	NaN	0.048652	1	7801	34.781	19.199	1	74525			14983	865	12599	12959	14983	14983		
NIYVLQELDNPGAK	14	Unmodified	_NIYVLQELDNPGAK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.414662	1572.81477	1.8759	0.0014771	-0.50807	-0.00040006	1.3678	0.001077	787.415271108456	13.682	0.26598	13.682	13.558	13.824	0	390	124	1.06389100039157	0.0822020502882823	1.06389100039157	429.85919375369	0	33.2132775338979						1358	31	5	NaN	NaN	NaN	7.2562E-08	1	20759	159.12	122.61	1	728220			14984	673	12600	12960	14984	14984		
NLAEALLTYETLDAK	15	Unmodified	_NLAEALLTYETLDAK_			0	0	0	Q96TA2	Q96TA2	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.94071	1663.86687	1.1164	0.00092986	1.1908	0.0009919	2.3072	0.0019218	832.941724746907	17.335	0.088678	17.335	17.3	17.388	0	249	25	1.15795408347545	0.0159590169349364	1.15795408347545	467.641329145391	0	6.44507066196269						213	11	4	NaN	NaN	NaN	3.0163E-06	1	23458	93.772	65.544	1	49720			14985	2634	12601	12961	14985	14985		
NLAGDVCAIMR	11	Unmodified	_NLAGDVCAIMR_			0	0	0	Q8TAQ2	Q8TAQ2	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.299733	1218.58491	1.5213	0.00092846	-1.1655	-0.0007113	0.35583	0.00021716	610.299023618306	12.893	0.097566	12.893	12.848	12.946	0	600	37	0.922661313351899	0.0243214961029116	0.922661313351899	373.740365637601	0	9.85185432055584						231	12	4	NaN	NaN	NaN	0.0029893	1	9972	51.872	35.22	1	50170			14986	2333	12602	12962	14986	14986		
NLALCPANHAPLQEAAVIPR	20	Unmodified	_NLALCPANHAPLQEAAVIPR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.052874	2154.13679	0.98305	0.00070687	0.76338	0.00054891	1.7464	0.0012558	719.387077970065	11.837	0.11532	11.837	11.793	11.908	0	459	28	1.01763759082241	0.0181266605748145	1.01763759082241	615.299478919656	0	10.9600165194598						231	14	4	NaN	NaN	NaN	0.04543	1	34100	48.363	46.392	1	67700			14987	706	12603	12963	14987	14987		
NLANTVTEEILEK	13	Unmodified	_NLANTVTEEILEK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.393396	1472.77224	1.5621	0.0011519	0.12224	9.0141E-05	1.6844	0.0012421	737.393848468676	14.586	0.2926	14.586	14.506	14.799	0	441	46	1.02971785871157	0.0301819168183546	1.02971785871157	416.298283092075	0	12.2020610263381						911	34	4	NaN	NaN	NaN	8.6442E-17	1	17676	188.6	140.44	1	918720			14988	263	12604	12964	14988	14988		
NLATTVTEEILEK	13	Unmodified	_NLATTVTEEILEK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.895771	1459.77699	1.17	0.00085518	0.98383	0.00071907	2.1539	0.0015743	730.896605440005	16.129	0.34582	16.129	16.058	16.404	0	447	79	1.02569221487577	0.0523623291261281	1.02569221487577	414.705134320148	0	21.1709969312741						899	40	5	NaN	NaN	NaN	2.2053E-07	1	17264	139.78	103.54	1	650700			14989	196	12605	12965	14989	14989		
NLCSDDTPMVR	11	Unmodified	_NLCSDDTPMVR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.289562	1306.56457	1.5498	0.001014	-0.10125	-6.6246E-05	1.4486	0.00094778	654.29012684896	6.2589	0.24831	6.2589	6.1968	6.4451	0	564	43	0.946969335010767	0.028335804573887	0.946969335010767	383.297344458394	0	11.4692611943336						733	29	4	NaN	NaN	NaN	0.0054826	1	12542	70.389	64.893	1	263420			14990	905	12606	12966	14990	14990		
NLDCPELISEFMK	13	Unmodified	_NLDCPELISEFMK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.375834	1594.73712	0.65645	0.0005241	0.24634	0.00019667	0.90279	0.00072077	798.376179856862	16.821	0.23059	16.821	16.714	16.945	0	408	46	1.0518390438467	0.0301486093573291	1.0518390438467	424.938673859544	0	12.1799149346657						761	27	6	NaN	NaN	NaN	3.4965E-11	1	21418	156.14	135.96	1	385810			14991	1071	12607	12967	14991	14991		
NLDDGIDDER	10	Unmodified	_NLDDGIDDER_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.254557	1160.49456	1.2086	0.00070251	9.3144	0.005414	10.523	0.0061165	581.761756559865	5.3455	0.30148	5.3455	5.2657	5.5671	0	612	61	0.914549654013882	0.0405864368098531	0.914549654013882	370.662149148603	0	16.449468684612						1147	35	6	NaN	NaN	NaN	0.0061588	1	8348	76.572	60.115	1	730910			14992	661	12608	12968	14992	14992		
NLDDGIDDERLR	12	Unmodified	_NLDDGIDDERLR_			0	0	1	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.567188	1429.67974	-0.99725	-0.00047626	1.4862	0.00070977	0.48896	0.00023351	477.567830238637	6.9417	0.079799	6.9417	6.9151	6.9949	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	489.303589069141	0	9.91638000595867						155	10	3	NaN	NaN	NaN	0.0044843	1	16373	40.386	37.284	1	49242			14993	661	12609	12969	14993	14993		
NLDDLTLLK	9	Unmodified	_NLDDLTLLK_			0	0	0	Q4VC31	Q4VC31	Q4VC31	CCDC58	Coiled-coil domain-containing protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.800414	1043.58628	-0.19684	-0.00010291	-3.8749	-0.0020258	-4.0717	-0.0021287	522.798854255098	13.407	0.1597	13.407	13.336	13.496	0	678	43	0.869855008346864	0.0284815345298798	0.869855008346864	353.011159249089	0	11.5585924379441						223	17	3	NaN	NaN	NaN	0.047024	1	5325	50.834	28.448	1	93299			14994	1944	12610	12970	14994	14994		
NLDDTIDDEK	10	Unmodified	_NLDDTIDDEK_			0	0	0	Q13310;P0CB38	Q13310	Q13310	PABPC4;PABPC4L	Polyadenylate-binding protein 4;Polyadenylate-binding protein 4-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.26459	1176.51463	2.1977	0.001295	0.72422	0.00042676	2.9219	0.0017218	589.265078900698	5.5494	0.26601	5.5494	5.4697	5.7357	0	582	37	0.934820374997243	0.0243046547974741	0.934820374997243	378.817206045209	0	9.84897384623173						606	31	5	NaN	NaN	NaN	2.1609E-05	1	8775	120.33	93.876	1	343650			14995	1653	12611	12971	14995	14995		
NLDENGLDLLSK	12	Unmodified	_NLDENGLDLLSK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.846081	1329.67761	0.96501	0.00064255	1.0245	0.00068213	1.9895	0.0013247	665.846460863762	12.618	0.1596	12.618	12.556	12.715	0	483	37	1.00151498427745	0.0242006280672292	1.00151498427745	405.301616810049	0	9.79371635716774						359	19	4	NaN	NaN	NaN	5.0455E-11	1	13279	108.4	70.678	1	175500			14996	540	12612	12972	14996	14996		
NLDFQDVLDK	10	Unmodified	_NLDFQDVLDK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.803685	1205.59282	1.2073	0.00072898	-0.45363	-0.0002739	0.75368	0.00045508	603.80302505966	13.558	0.19506	13.558	13.478	13.673	0	588	34	0.93076847747433	0.0222869832094168	0.93076847747433	377.069812870263	0	9.02882810451564						566	23	5	NaN	NaN	NaN	1.6702E-05	1	9619	120.33	79.308	1	278880			14997	3395	12613	12973	14997	14997		
NLDLAVLELMQSSVDNTK	18	Unmodified	_NLDLAVLELMQSSVDNTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.511705	1989.00886	-0.093354	-9.2935E-05	0.08295	8.2578E-05	-0.010404	-1.0357E-05	996.012971628547	19.632	0.0532	19.632	19.614	19.667	0	69	40	1.27715511956461	0.0257261069079902	1.27715511956461	515.083879128219	0	10.3754843386231						153	7	3	NaN	NaN	NaN	7.0084E-07	1	31439	85.742	74.062	1	28072			14998	1465	12614	12974	14998	14998		
NLDLAVLELMQSSVDNTK	18	Unmodified	_NLDLAVLELMQSSVDNTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.511705	1989.00886	1.3477	0.0013417	-0.37271	-0.00037103	0.97503	0.00097066	996.013087650316	19.632	0.097557	19.632	19.605	19.703	0	195	64	1.19381749893585	0.0417918410057598	1.19381749893585	481.473347165866	0	16.8548857687235						419	12	5	NaN	NaN	NaN	6.8908E-14	1	31440	135.5	132.06	1	120770			14999	1465	12614	12974	14999	14999		
NLDLAVLELMQSSVDNTK	18	Unmodified	_NLDLAVLELMQSSVDNTK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.010229	1989.00886	0.042404	2.8157E-05	2.3784	0.0015793	2.4208	0.0016074	664.346735996354	19.632	0.04434	19.632	19.614	19.658	0	519	22	0.97729762293174	0.014137541397	0.97729762293174	591.222400230246	0	8.55259540385941						116	6	4	NaN	NaN	NaN	0.028089	1	31441	39.82	39.201	1	29839			15000	1465	12614	12974	15000	15000		
NLDLEPCTGFQR	12	Unmodified	_NLDLEPCTGFQR_			0	0	0	O95453	O95453	O95453	PARN	Poly(A)-specific ribonuclease PARN	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.343183	1448.67181	1.6037	0.0011632	-1.5761	-0.0011432	0.027541	1.9976E-05	725.344479978965	10.596	0.16846	10.596	10.507	10.676	0	468	34	1.01159370163332	0.022167054085688	1.01159370163332	409.034306511028	0	8.96316928495304						303	20	2	NaN	NaN	NaN	0.0016753	1	16933	35.845	30.35	1	97664			15001	435	12615	12975	15001	15001		
NLDLSWSELK	10	Unmodified	_NLDLSWSELK_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.814053	1203.61355	0.23107	0.0001393	-0.72939	-0.00043969	-0.49832	-0.00030039	602.813746880451	14.116	0.1596	14.116	14.063	14.223	0	603	40	0.920633820089869	0.0263537653577723	0.920633820089869	372.97103624748	0	10.6765480042346						293	19	2	NaN	NaN	NaN	0.0087365	1	9571	57.888	39.485	1	96268			15002	1593	12616	12976	15002	15002		
NLDPFLLFDEFK	12	Unmodified	_NLDPFLLFDEFK_			0	0	0	O00625	O00625	O00625	PIR	Pirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.384842	1496.75513	0.70185	0.00052595	-1.3239	-0.00099213	-0.62208	-0.00046617	749.383608898708	20.084	0.079806	20.084	20.066	20.146	0	414	55	1.04781950764076	0.0361858246299764	1.04781950764076	423.5533088252	0	14.6271620663982						198	10	4	NaN	NaN	NaN	0.0015857	1	18447	67.548	61.284	1	78993			15003	95	12617	12977	15003	15003		
NLDQEQLSQVLDAMFER	17	Unmodified	_NLDQEQLSQVLDAMFER_			0	0	0	P13861	P13861	P13861	PRKAR2A	cAMP-dependent protein kinase type II-alpha regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.4913	2034.96805	0.99486	0.0010133	1.3086	0.0013328	2.3035	0.0023461	1018.49353758382	19.924	0.035468	19.924	19.915	19.951	0	201	49	1.18983705239708	0.0318435817655442	1.18983705239708	479.792889063725	0	12.8406860944928						155	5	5	NaN	NaN	NaN	1.857E-10	1	32243	80.128	77.738	1	38463			15004	687	12618	12978	15004	15004		
NLDSLEEDLDFLR	13	Unmodified	_NLDSLEEDLDFLR_			0	0	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.885935	1577.75732	1.1349	0.00089644	-0.64388	-0.00050859	0.49102	0.00038785	789.885132097391	18.763	0.11528	18.763	18.718	18.834	0	417	49	1.04580932352505	0.0321696140017538	1.04580932352505	422.541841251304	0	12.997596815094						395	14	5	NaN	NaN	NaN	2.0177E-07	1	20901	145.95	95.649	1	160870			15005	1349	12619	12979	15005	15005		
NLDSTTVAVHGEEIYCK	17	Unmodified	_NLDSTTVAVHGEEIYCK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.975407	1934.90439	1.7192	0.0011105	-0.39888	-0.00025766	1.3203	0.00085289	646.3096944942	8.1833	0.15081	8.1833	8.139	8.2898	0	570	40	0.942920803299286	0.0263209282177764	0.942920803299286	570.536351021535	0	15.9260950530788						514	18	5	NaN	NaN	NaN	4.078E-05	1	30416	82.437	75.581	1	220040			15006	791	12620	12980	15006	15006		
NLDSTTVAVHGEEIYCK	17	Unmodified	_NLDSTTVAVHGEEIYCK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.459472	1934.90439	2.0768	0.0020113	-0.73043	-0.00070739	1.3463	0.0013039	968.45906837963	8.1833	0.15967	8.1833	8.139	8.2987	0	90	73	1.26329880838669	0.0475692434130042	1.26329880838669	509.594274911668	0	19.188662210569						815	19	5	NaN	NaN	NaN	7.0065E-26	1	30417	200.96	185.43	1	294110			15007	791	12620	12980	15007	15007		
NLDVGANIFIGNLDPEIDEK	20	Unmodified	_NLDVGANIFIGNLDPEIDEK_			0	0	0	Q15427	Q15427	Q15427	SF3B4	Splicing factor 3B subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.55242	2185.09028	0.17387	0.00019014	0.64168	0.00070171	0.81556	0.00089186	1094.05476331254	18.257	0.097528	18.257	18.222	18.319	0	129	34	1.23753038177212	0.0218219896940597	1.23753038177212	498.792480829668	0	8.79545628653807						279	12	4	NaN	NaN	NaN	1.3012E-12	1	34523	102.1	97.506	1	57082			15008	1847	12621	12981	15008	15008		
NLDYVATSIHEAVTK	15	Unmodified	_NLDYVATSIHEAVTK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.289543	1659.8468	0.54857	0.00030407	-0.40354	-0.00022368	0.14504	8.0393E-05	554.289523028771	11.314	0.20401	11.314	11.243	11.447	0	657	37	0.884090832094921	0.0243958062014034	0.884090832094921	535.569955360376	0	14.7786407956588						428	24	3	NaN	NaN	NaN	0.0032206	1	23342	52.863	49.358	1	255050			15009	736	12622	12982	15009	15009		
NLDYVATSIHEAVTK	15	Unmodified	_NLDYVATSIHEAVTK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.930677	1659.8468	2.8969	0.0024071	-2.4424	-0.0020295	0.45447	0.00037763	830.928664561849	11.314	0.14192	11.314	11.279	11.42	0	270	34	1.14398322290989	0.0219693125101945	1.14398322290989	462.008433157943	0	8.87251442776761						347	17	4	NaN	NaN	NaN	3.9806E-06	1	23343	97.084	65.659	1	105990			15010	736	12622	12982	15010	15010		
NLEAIVQEIK	10	Unmodified	_NLEAIVQEIK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.832246	1155.64994	0.66828	0.00038682	-2.3764	-0.0013755	-1.7081	-0.00098871	578.831119322924	13.611	0.23943	13.611	13.522	13.762	0	588	49	0.93076847747433	0.0324241729460041	0.93076847747433	377.254177446015	0	13.1419950182503						616	28	4	NaN	NaN	NaN	0.00076439	1	8230	104.39	63.37	1	247240			15011	1106	12623	12983	15011	15011		
NLEAVETLGSTSTICSDK	18	Unmodified	_NLEAVETLGSTSTICSDK_			0	0	0	P05023;P13637;P50993;Q13733	P05023	P05023	ATP1A1;ATP1A3;ATP1A2;ATP1A4	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.962045	1923.90954	2.5811	0.0024855	-1.6252	-0.001565	0.95587	0.00092047	962.960837986498	11.066	0.15964	11.066	11.012	11.172	0	255	88	1.15396378101328	0.0578316130824434	1.15396378101328	465.509241639152	0	23.3292853655581						840	19	5	NaN	NaN	NaN	6.2029E-19	1	30142	144.38	126.28	1	225570			15012	522	12624	12984	15012	15012		
NLEAYAANPHSFVFTR	16	Unmodified	_NLEAYAANPHSFVFTR_			0	0	0	Q9NQ55	Q9NQ55	Q9NQ55	PPAN	Suppressor of SWI4 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.955017	1835.89548	1.4059	0.001292	3.0375	0.0027913	4.4434	0.0040833	919.459697581586	11.758	0.079802	11.758	11.722	11.802	0	207	34	1.18585551256002	0.0218969686057855	1.18585551256002	478.538546490171	0	8.83627340613566						188	10	3	NaN	NaN	NaN	4.7209E-07	1	28131	126.63	120.25	1	37955			15013	2997	12625	12985	15013	15013		
NLELNDDTILNDIK	14	Unmodified	_NLELNDDTILNDIK_			0	0	0	Q6P3X3	Q6P3X3	Q6P3X3	TTC27	Tetratricopeptide repeat protein 27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.420142	1628.82573	1.6295	0.0013288	-2.4733	-0.0020168	-0.8438	-0.00068805	815.92078376818	15.242	0.053232	15.242	15.207	15.26	0	357	34	1.08596037261705	0.0220480903949298	1.08596037261705	438.644498293244	0	8.90573338905676						109	7	3	NaN	NaN	NaN	5.2332E-08	1	22440	154.94	93.365	1	29122			15014	2066	12626	12986	15014	15014		
NLEPEWAAAASEVK	14	Unmodified	_NLEPEWAAAASEVK_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.877913	1513.74127	1.2351	0.00093607	-0.10706	-8.1141E-05	1.1281	0.00085493	757.877883439231	12.024	0.24831	12.024	11.899	12.148	0	462	130	1.01562323939346	0.0864619676364178	1.01562323939346	410.496606210678	0	34.946368795424						1656	29	3	NaN	NaN	NaN	1.1767E-05	1	18923	128.46	73.227	1	934980			15015	1811	12627	12987	15015	15015		
NLETFCEETR	10	Unmodified	_NLETFCEETR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.787709	1297.56087	1.6651	0.001082	2.0509	0.0013327	3.7161	0.0024147	649.789561616159	6.9505	0.22174	6.9505	6.853	7.0747	0	549	40	0.957085760909907	0.0262954306323098	0.957085760909907	387.420206903388	0	10.6441675263228						414	26	3	NaN	NaN	NaN	0.011932	1	12273	59.645	48.285	1	122610			15016	3161	12628	12988	15016	15016		
NLETLQQELGIEGENR	16	Unmodified	_NLETLQQELGIEGENR_			0	0	0	Q9Y4W6	Q9Y4W6	Q9Y4W6	AFG3L2	AFG3-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.963236	1841.91192	1.9435	0.0017919	-0.33696	-0.00031067	1.6066	0.0014812	921.963691883593	14.019	0.097504	14.019	13.974	14.072	0	288	43	1.13199748998575	0.0279782603553778	1.13199748998575	456.793575157361	0	11.290033491662						363	12	4	NaN	NaN	NaN	1.8856E-17	1	28284	160.52	136.69	1	84384			15017	3416	12629	12989	15017	15017		
NLEVSSCVGSGGSSEAR	17	Unmodified	_NLEVSSCVGSGGSSEAR_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.383765	1694.75298	2.3185	0.001967	-2.8206	-0.002393	-0.5021	-0.00042597	848.88184455149	5.5583	0.079797	5.5583	5.5139	5.5937	0	408	34	1.0518390438467	0.0221089774592802	1.0518390438467	424.722697083042	0	8.92739682101239						181	10	3	NaN	NaN	NaN	0.0027304	1	24325	39.82	37.836	1	34430			15018	2819	12630	12990	15018	15018		
NLFEQLVR	8	Unmodified	_NLFEQLVR_			0	0	0	Q9H0H5	Q9H0H5	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.787641	1017.56073	-0.63925	-0.00032588	-2.2816	-0.0011631	-2.9208	-0.001489	509.78639052772	14.01	0.11529	14.01	13.957	14.072	-1.7764E-15	687	34	0.863749705078866	0.0223861150035557	0.863749705078866	350.650166356423	0	9.08792779194533						191	14	2	NaN	NaN	NaN	0.0036637	1	4688	60.709	26.896	1	50580			15019	2846	12631	12991	15019	15019		
NLFFSTNIDDAIK	13	Unmodified	_NLFFSTNIDDAIK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.382831	1496.75111	1.0862	0.00081398	1.4114	0.0010577	2.4976	0.0018717	749.383646265336	15.721	0.13302	15.721	15.668	15.801	0	363	34	1.08195024817156	0.0220572074083873	1.08195024817156	437.34975731979	0	8.9160424183209						400	16	4	NaN	NaN	NaN	0.00042144	1	18448	71.896	50.808	1	140100			15020	275	12632	12992	15020	15020		
NLFNVVDCK	9	Unmodified	_NLFNVVDCK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.776416	1107.53828	0.96368	0.00053463	0.71799	0.00039833	1.6817	0.00093296	554.776983165719	11.039	0.19509	11.039	10.968	11.163	0	618	37	0.910492137470517	0.0243518545960122	0.910492137470517	369.224850131234	0	9.87521966813404						390	23	2	NaN	NaN	NaN	9.9963E-05	1	6914	106.93	80.47	1	247320			15021	1280	12633	12993	15021	15021		
NLGHWLGMITLAK	13	Unmodified	_NLGHWLGMITLAK_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.27099	1452.79114	-2.1701	-0.0010531	0.69155	0.00033559	-1.4786	-0.00071752	485.271384936237	15.775	0.097574	15.775	15.739	15.837	0	801	22	0.78619514174348	0.0143231624709025	0.78619514174348	476.826887400067	0	8.68698954763352						170	12	4	NaN	NaN	NaN	0.0016115	1	17059	58.476	53.325	1	40007			15022	10	12634	12994	15022	15022		
NLGIEAVPWTADIPLK	16	Unmodified	_NLGIEAVPWTADIPLK_			0	0	0	Q9H5Q4	Q9H5Q4	Q9H5Q4	TFB2M	Dimethyladenosine transferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.982712	1735.95087	1.1439	0.00099403	-0.45619	-0.00039642	0.68771	0.0005976	869.483392969583	18.107	0.088639	18.107	18.071	18.16	0	291	34	1.12999890578964	0.0219844292788041	1.12999890578964	456.195060296243	0	8.87539624068404						196	11	4	NaN	NaN	NaN	0.0018196	1	25498	61.042	56.213	1	50007			15023	2901	12635	12995	15023	15023		
NLGIESQDVMQQATNAILR	19	Unmodified	_NLGIESQDVMQQATNAILR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.03895	2100.06335	1.1866	0.0012472	-1.1324	-0.0011902	0.054277	5.7048E-05	1051.53852603891	16.989	0.097532	16.989	16.954	17.051	0	165	37	1.21370334790578	0.0238466525672962	1.21370334790578	489.31399059806	0	9.61396435977787						268	12	3	NaN	NaN	NaN	5.4921E-05	1	33321	51.577	50.307	1	68084			15024	2110	12636	12996	15024	15024		
NLGIVSVTSTDISSLYAK	18	Unmodified	_NLGIVSVTSTDISSLYAK_			0	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.504206	1866.99386	1.1739	0.001097	0.0081456	7.6121E-06	1.182	0.0011046	935.006061455636	16.174	0.13302	16.174	16.129	16.262	0	225	31	1.17390432875292	0.0199241144356994	1.17390432875292	473.656620923963	0	8.03914636599148						250	16	4	NaN	NaN	NaN	2.2744E-05	1	28870	48.363	44.291	1	61051			15025	2128	12637	12997	15025	15025		
NLGLEELGIELDPR	14	Unmodified	_NLGLEELGIELDPR_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.419945	1566.82534	0.91634	0.0007188	0.70095	0.00054984	1.6173	0.0012686	784.420621776178	17.317	0.28377	17.317	17.211	17.495	0	393	64	1.0618830335572	0.0421789590923636	1.0618830335572	429.062195129335	0	17.0427403061668						1171	33	5	NaN	NaN	NaN	3.0359E-33	1	20559	281.24	242.23	1	604470			15026	607	12638	12998	15026	15026		
NLGLEELGIELDPR	14	Unmodified	_NLGLEELGIELDPR_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.419945	1566.82534	0.84824	0.00066538	2.4128	0.0018926	3.261	0.002558	784.421025948061	17.326	0.15964	17.326	17.246	17.406	0	291	37	1.12999890578964	0.0239846644495882	1.12999890578964	456.584942418506	0	9.6911922485358						255	19	4	NaN	NaN	NaN	0.0041292	1	20561	55.578	45.328	1	87640			15027	607	12638	12998	15027	15027		
NLGLFQHHDAITGTAK	16	Unmodified	_NLGLFQHHDAITGTAK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.968916	1721.88492	0.4657	0.00026776	0.41838	0.00024056	0.88408	0.00050832	574.969235296074	7.4738	0.14184	7.4738	7.4294	7.5713	8.8818E-16	660	34	0.882057989648486	0.0223643734856528	0.882057989648486	534.179264397804	0	13.5439899842012						427	17	5	NaN	NaN	NaN	3.7756E-05	1	25109	70.806	50.47	1	169950			15028	1901	12639	12999	15028	15028		
NLGLFQHHDAITGTAK	16	Unmodified	_NLGLFQHHDAITGTAK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.949735	1721.88492	2.7276	0.0023511	-0.91009	-0.00078446	1.8175	0.0015666	861.948857771466	7.4738	0.10642	7.4738	7.4383	7.5447	0	276	34	1.13998907770044	0.0219723346163216	1.13998907770044	460.258005477871	0	8.87108754287385						246	13	4	NaN	NaN	NaN	0.00090138	1	25110	72.031	63.225	1	62438			15029	1901	12639	12999	15029	15029		
NLGMTDAFELGK	12	Unmodified	_NLGMTDAFELGK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.318645	1294.62274	1.8557	0.0012031	0.039473	2.5591E-05	1.8951	0.0012286	648.318836221976	12.963	0.20392	12.963	12.901	13.105	0	504	58	0.987393073566096	0.0383627278189489	0.987393073566096	399.697913984606	0	15.5292787588779						774	24	5	NaN	NaN	NaN	9.4318E-06	1	12200	108.93	75.533	1	453260			15030	961	12640	13000	15030	15030		
NLGMTDAFELGK	12	Oxidation (M)	_NLGM(Oxidation (M))TDAFELGK_	NLGM(1)TDAFELGK	NLGM(72)TDAFELGK	0	1	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.316103	1310.61765	1.2722	0.00083495	0.28588	0.00018763	1.5581	0.0010226	656.315659003176	9.9218	0.24826	9.9218	9.8509	10.099	0	519	64	0.97729762293174	0.0424419911794726	0.97729762293174	395.560285811395	0	17.178355669171						518	29	4	NaN	NaN	NaN	0.010717	1	12667	72.365	52.131	1	125730			15031	961	12640	13001	15031	15031	344	
NLGPINEWWITGFDGGEK	18	Unmodified	_NLGPINEWWITGFDGGEK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.9918	2031.96904	0.87557	0.00089045	-0.067558	-6.8706E-05	0.80802	0.00082175	1017.49306061493	18.86	0.088654	18.86	18.816	18.905	0	246	37	1.1599488233373	0.0239319475635371	1.1599488233373	467.745366580803	0	9.65047540105496						277	11	4	NaN	NaN	NaN	3.2431E-08	1	32185	123.99	109.63	1	65301			15032	849	12641	13002	15032	15032		
NLGSINTELQDVQR	14	Unmodified	_NLGSINTELQDVQR_			0	0	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.910276	1585.806	2.1117	0.0016765	-0.76022	-0.00060354	1.3514	0.0010729	793.909833832948	10.569	0.14186	10.569	10.534	10.676	0	414	40	1.04781950764076	0.0261251880875029	1.04781950764076	423.335327268293	0	10.5549810519089						412	17	4	NaN	NaN	NaN	6.2976E-12	1	21135	165.72	126.69	1	138430			15033	331	12642	13003	15033	15033		
NLGVVVAPHTLK	12	Unmodified	_NLGVVVAPHTLK_			0	0	0	Q9BYD2	Q9BYD2	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.377155	1246.73976	1.292	0.00080666	1.159	0.00072364	2.4509	0.0015303	624.377901365323	7.5536	0.10641	7.5536	7.5181	7.6245	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	405.578818079707	0	10.6163825010441						269	13	3	NaN	NaN	NaN	5.6365E-06	1	10838	101.82	76.564	1	90141			15034	2798	12643	13004	15034	15034		
NLHHELELGVVMGK	14	Unmodified	_NLHHELELGVVMGK_			0	0	0	Q6P587	Q6P587	Q6P587	FAHD1	Acylpyruvase FAHD1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.948575	1574.8239	-0.69049	-0.00036316	-0.83929	-0.00044142	-1.5298	-0.00080458	525.948220325396	8.9908	0.079804	8.9908	8.9642	9.044	0	735	43	0.831145085810763	0.0285607760310633	0.831145085810763	503.720854004992	0	17.3094430070277						182	10	3	NaN	NaN	NaN	0.0033575	1	20831	35.845	29.818	1	42036			15035	2067	12644	13005	15035	15035		
NLHQSGFSLSGAQIDDNIPR	20	Unmodified	_NLHQSGFSLSGAQIDDNIPR_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.694291	2168.06104	1.9319	0.0013981	0.82376	0.00059615	2.7556	0.0019942	724.02931660436	11.35	0.079843	11.35	11.323	11.403	0	408	40	1.0518390438467	0.0261251880875029	1.0518390438467	635.952734577967	0	15.7955581729029						185	10	2	NaN	NaN	NaN	0.00064981	1	34284	110.14	98.928	1	77598			15036	1889	12645	13006	15036	15036		
NLHVVFTMNPSSEGLK	16	Unmodified	_NLHVVFTMNPSSEGLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.638178	1771.8927	-1.143	-0.00067627	0.059064	3.4944E-05	-1.084	-0.00064132	591.972723377249	11.695	0.079804	11.695	11.651	11.731	0	726	61	0.837263974740672	0.0407501192915529	0.837263974740672	506.937593712377	0	24.6729443047522						238	10	4	NaN	NaN	NaN	0.022501	1	26470	46.068	45.449	1	43534			15037	1737	12646	13007	15037	15037		
NLHYFNSDSFASHPNYPYSDEY	22	Unmodified	_NLHYFNSDSFASHPNYPYSDEY_			0	0	0	P42330	P42330	P42330	AKR1C3	Aldo-keto reductase family 1 member C3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.706813	2666.09861	1.3792	0.0012271	-0.27745	-0.00024685	1.1017	0.00098023	890.0406999436	12.245	0.10643	12.245	12.201	12.307	0	516	58	0.979317271586824	0.0383733409647169	0.979317271586824	591.401213353078	0	23.1733280575895						577	13	5	NaN	NaN	NaN	4.6047E-12	1	37489	122.66	119.6	1	169060			15038	1048	12647	13008	15038	15038		
NLIDAGVDALR	11	Unmodified	_NLIDAGVDALR_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.81967	1155.62479	0.38173	0.00022095	-0.54872	-0.00031761	-0.167	-9.6662E-05	578.819277149628	13.212	0.19508	13.212	13.141	13.336	0	627	106	0.90440375274676	0.0709427038512803	0.90440375274676	366.568252239494	0	28.7541298683549						1332	23	4	NaN	NaN	NaN	2.3065E-05	1	8224	106.35	36.637	1	655740			15039	666	12648	13009	15039	15039		
NLIDEDGNNQWPEGLK	16	Unmodified	_NLIDEDGNNQWPEGLK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.436854	1840.85916	2.2021	0.0020291	0.057311	5.2809E-05	2.2594	0.0020819	921.938083452291	12.644	0.26603	12.644	12.564	12.83	0	306	61	1.12000185836644	0.0399909592124241	1.12000185836644	451.954922977489	0	16.1375722331468						670	31	4	NaN	NaN	NaN	2.5223E-09	1	28246	146.37	130.08	1	199330			15040	74	12649	13010	15040	15040		
NLIEWLNK	8	Unmodified	_NLIEWLNK_			0	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.290017	1028.56548	-0.13889	-7.1568E-05	-1.362	-0.0007018	-1.5008	-0.00077337	515.289352248003	14.054	0.25715	14.054	13.992	14.249	0	708	43	0.849494101904619	0.0285250764845424	0.849494101904619	344.813678492081	0	11.5784636171699						691	30	4	NaN	NaN	NaN	0.00038114	1	4960	121.31	90.751	1	600460			15041	2504	12650	13011	15041	15041		
NLILFLGDGLGVPTVTATR	19	Unmodified	_NLILFLGDGLGVPTVTATR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.04208	1956.10441	0.30346	0.00019817	0.74629	0.00048736	1.0497	0.00068553	653.377029486422	19.729	0.04434	19.729	19.703	19.747	0	516	19	0.979317271586824	0.0121170544279811	0.979317271586824	592.513196657281	0	7.3311426863329						75	6	3	NaN	NaN	NaN	0.040791	1	30830	40.83	40.707	1	15628			15042	613	12651	13012	15042	15042		
NLILFLGDGLGVPTVTATR	19	Unmodified	_NLILFLGDGLGVPTVTATR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.059483	1956.10441	1.7358	0.0016994	-0.35452	-0.0003471	1.3812	0.0013523	979.560602587823	19.729	0.12416	19.729	19.667	19.791	0	189	85	1.1977968526266	0.0557263027593271	1.1977968526266	483.134554746346	0	22.477352826774						807	15	6	NaN	NaN	NaN	2.1625E-28	1	30831	236.37	216.81	1	422340			15043	613	12651	13012	15043	15043		
NLLDVIDQAR	10	Unmodified	_NLLDVIDQAR_			0	0	0	Q05397	Q05397	Q05397	PTK2	Focal adhesion kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.81967	1155.62479	-0.88126	-0.00051009	0.19222	0.00011126	-0.68904	-0.00039883	578.819810886553	14.879	0.10638	14.879	14.843	14.95	0	633	37	0.900343422309015	0.0243619867259138	0.900343422309015	364.922536908907	0	9.87427439338842						240	13	3	NaN	NaN	NaN	0.0015599	1	8223	76.572	38.981	1	73043			15044	1551	12652	13013	15044	15044		
NLLESYHVPELIK	13	Unmodified	_NLLESYHVPELIK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.955724	1553.84534	0.69169	0.00035895	0.0075999	3.944E-06	0.69929	0.0003629	518.955468725964	13.939	0.19508	13.939	13.832	14.028	0	648	40	0.890187667287968	0.0264122944165538	0.890187667287968	539.567393038893	0	16.0092229607417						397	23	3	NaN	NaN	NaN	0.04497	1	20183	26.465	23.794	1	118810			15045	1055	12653	13014	15045	15045		
NLLESYHVPELIK	13	Unmodified	_NLLESYHVPELIK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.929948	1553.84534	2.332	0.0018142	0.80337	0.00062496	3.1354	0.0024391	778.431949150309	13.948	0.28375	13.948	13.797	14.081	0	297	100	1.12600091227925	0.0660714937390592	1.12600091227925	455.002820203645	0	26.6986604171452						1449	33	5	NaN	NaN	NaN	1.3809E-05	1	20184	115.05	103.7	1	628170			15046	1055	12653	13014	15046	15046		
NLLHVTDTGVGMTR	14	Unmodified	_NLLHVTDTGVGMTR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.264564	1512.77186	-1.2507	-0.00063195	-2.3379	-0.0011812	-3.5886	-0.0018132	505.263364823922	8.9198	0.21298	8.9198	8.8753	9.0883	0	795	121	0.790287188799094	0.0816818206432094	0.790287188799094	479.129655648398	0	49.5214690965519						638	25	5	NaN	NaN	NaN	6.5634E-06	1	18892	132.9	108.16	1	281070			15047	700	12654	13015	15047	15047		
NLLHVTDTGVGMTR	14	Unmodified	_NLLHVTDTGVGMTR_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.393207	1512.77186	2.2546	0.0017076	-0.26171	-0.00019822	1.9929	0.0015094	757.393863718415	8.9109	0.18636	8.9109	8.8576	9.044	0	396	73	1.05987478976334	0.0482211594652822	1.05987478976334	428.384773184093	0	19.4902366390103						1068	22	6	NaN	NaN	NaN	2.5429E-11	1	18894	171.2	157.4	1	862490			15048	700	12654	13015	15048	15048		
NLLIFENLIDLK	12	Unmodified	_NLLIFENLIDLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.924135	1443.83372	0.90377	0.00065336	-1.2617	-0.00091212	-0.35794	-0.00025877	722.923107316431	19.986	0.044334	19.986	19.978	20.022	0	411	37	1.04982941439551	0.0241172212531353	1.04982941439551	424.508234064114	0	9.75202148493526						133	6	4	NaN	NaN	NaN	0.00025978	1	16800	73.655	42.737	1	67702			15049	1465	12655	13016	15049	15049		
NLLLLANSTEEQQK	14	Unmodified	_NLLLLANSTEEQQK_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.930677	1599.8468	1.7045	0.0013652	-0.46981	-0.00037629	1.2347	0.0009889	800.929682619867	11.465	0.13304	11.465	11.394	11.527	0	363	37	1.08195024817156	0.0240640669775463	1.08195024817156	437.091460000543	0	9.72151740483622						259	16	3	NaN	NaN	NaN	0.00047784	1	21583	84.309	76.752	1	57653			15050	301	12656	13017	15050	15050		
NLLLLANSTEEQQK	14	Unmodified	_NLLLLANSTEEQQK_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.930677	1599.8468	1.714	0.0013728	1.9942	0.0015972	3.7082	0.00297	801.434013484174	11.474	0.097558	11.474	11.42	11.518	0	306	49	1.12000185836644	0.0320191966216983	1.12000185836644	452.463722743164	0	12.9352686287766						246	12	3	NaN	NaN	NaN	0.055852	1	21584	13.778	11.794	1	46550			15051	301	12656	13017	15051	15051		
NLLNLDVIK	9	Unmodified	_NLLNLDVIK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.318774	1040.623	0.49698	0.00025909	-2.1066	-0.0010982	-1.6097	-0.00083914	521.317654062713	14.551	0.23941	14.551	14.462	14.701	1.7764E-15	699	64	0.85560534332665	0.0427668297358818	0.85560534332665	347.24111869672	0	17.3566024527855						1032	28	5	NaN	NaN	NaN	0.034796	1	5245	46.447	18.742	1	1214000			15052	2329	12657	13018	15052	15052		
NLLQVDLTK	9	Unmodified	_NLLQVDLTK_			0	0	0	P17612;P22694	P17612;P22694	P17612	PRKACA;PRKACB	cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.308406	1042.60226	0.24034	0.00012553	-9.4792	-0.0049511	-9.2389	-0.0048255	522.804483693385	11.447	0.17735	11.447	11.394	11.571	0	672	52	0.873923798053065	0.0345919271139168	0.873923798053065	354.666770910574	0	14.0385318678802						509	21	4	NaN	NaN	NaN	0.0074406	1	5303	69.716	26.881	1	172680			15053	738;810	12658	13019	15053	15053		
NLLSCVYSCPSYIAK	15	Unmodified	_NLLSCVYSCPSYIAK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.928765	1773.84298	2.8442	0.0025254	-4.1548	-0.0036892	-1.3106	-0.0011637	887.925402729437	13.549	0.14185	13.549	13.496	13.637	0	294	55	1.12800004657306	0.035986907125598	1.12800004657306	455.311033956072	0	14.5259177444333						508	17	4	NaN	NaN	NaN	0.00020381	1	26503	91.245	81.502	1	139820			15054	2900	12659	13020	15054	15054		
NLLSVAYK	8	Unmodified	_NLLSVAYK_			0	0	0	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P27348;P31946;P31947;P61981;P62258;P63104;Q04917	P62258	YWHAQ;YWHAB;SFN;YWHAG;YWHAE;YWHAZ;YWHAH	14-3-3 protein theta;14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed;14-3-3 protein sigma;14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed;14-3-3 protein epsilon;14-3-3 protein zeta/delta;14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.26601	906.517468	-1.2219	-0.00055507	-0.86598	-0.00039339	-2.0879	-0.00094845	454.265630397403	9.2213	0.29266	9.2213	9.177	9.4696	0	771	46	0.806643990516186	0.0306498114995809	0.806643990516186	328.002070803805	0	12.4629970095922						512	34	4	NaN	NaN	NaN	0.048445	1	2450	53.878	9.1113	1	230430			15055	1375;1427;863;1361;933;932;1547	12660	13021	15055	15055		
NLMAQLQETMR	11	Unmodified	_NLMAQLQETMR_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.831397	1333.64824	0.58503	0.0003907	-1.1167	-0.00074579	-0.53171	-0.00035509	667.831531720157	13.655	0.10639	13.655	13.602	13.708	0	531	34	0.969216233931596	0.0222345870481429	0.969216233931596	392.218680343168	0	8.99780676869403						196	13	3	NaN	NaN	NaN	0.00073231	1	13391	83.358	73.27	1	46091			15056	1784	12661	13022	15056	15056		
NLMFLVLR	8	Unmodified	_NLMFLVLR_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.29933	1004.58411	-1.5759	-0.00079314	-0.66521	-0.0003348	-2.2411	-0.0011279	503.298990524645	16.972	0.1685	16.972	16.901	17.069	0	687	37	0.863749705078866	0.0244229125119191	0.863749705078866	350.710593598394	0	9.91650022465097						361	20	3	NaN	NaN	NaN	0.0079318	1	4391	66.087	49.54	1	93001			15057	229	12662	13023	15057	15057		
NLMTSEIHNTVK	12	Unmodified	_NLMTSEIHNTVK_			0	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.855926	1385.6973	1.8463	0.0012811	0.11049	7.6667E-05	1.9568	0.0013578	693.85636420669	6.8885	0.088658	6.8885	6.853	6.9417	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.727504115534	0	7.32855077524113						182	11	3	NaN	NaN	NaN	0.023244	1	15006	42.061	33.084	1	50493			15058	193	12663	13024	15058	15058		
NLNDQVLFIDQGNRPLFEDMTDSDCR	26	Unmodified	_NLNDQVLFIDQGNRPLFEDMTDSDCR_			0	0	1	Q14116	Q14116	Q14116	IL18	Interleukin-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1038.14148	3111.4026	0.46851	0.00048638	0.59002	0.00061253	1.0585	0.0010989	1038.81066200783	16.759	0.088665	16.759	16.714	16.803	0	411	73	1.04982941439551	0.048214507613157	1.04982941439551	633.511958579201	0	29.0946955106324						620	11	5	NaN	NaN	NaN	1.0224E-13	1	38371	113.93	111.02	1	122060			15059	1719	12664	13025	15059	15059		
NLNPEDIDQLITISGMVIR	19	Unmodified	_NLNPEDIDQLITISGMVIR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.06718	2140.1198	0.8147	0.00087259	0.98115	0.0010509	1.7958	0.0019235	1071.56866222226	20.04	0.044346	20.04	20.022	20.066	0	138	58	1.23157729878518	0.037718386828598	1.23157729878518	496.458950962864	0	15.2045923348929						159	6	5	NaN	NaN	NaN	0.070276	1	33892	17.807	15.418	1	48770			15060	950	12665	13026	15060	15060		
NLNTLCWAIGSISGAMHEEDEK	22	Unmodified	_NLNTLCWAIGSISGAMHEEDEK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.714146	2474.12061	1.0388	0.00085779	3.7493	0.0030959	4.7882	0.0039537	826.05181883857	18.257	0.097528	18.257	18.222	18.319	0	450	103	1.02367897599655	0.068398255433112	1.02367897599655	618.439601745627	0	41.3217335141327						761	12	4	NaN	NaN	NaN	2.5413E-08	1	36699	113.48	111.24	1	168860			15061	135	12666	13027	15061	15061		
NLPFDFTWK	9	Unmodified	_NLPFDFTWK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.295299	1166.57605	-0.51177	-0.00029902	-1.3275	-0.00077563	-1.8392	-0.0010747	584.294603498788	16.856	0.37246	16.856	16.741	17.114	0	648	61	0.890187667287968	0.0406258559608167	0.890187667287968	360.766318821994	0	16.4644389521015						1764	43	5	NaN	NaN	NaN	0.006868	1	8510	81.642	43.32	1	1457100			15062	1206	12667	13028	15062	15062		
NLPGLVQEGEPFSEEATLFTK	21	Unmodified	_NLPGLVQEGEPFSEEATLFTK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1153.58117	2305.14779	0.46774	0.00053958	-0.78913	-0.00091032	-0.32138	-0.00037074	1154.08214433642	17.708	0.19505	17.708	17.646	17.841	0	63	85	1.28111162701928	0.0554518656540803	1.28111162701928	516.188181661361	0	22.3427819231548						1228	23	5	NaN	NaN	NaN	0.00023805	1	35675	41.284	35.178	1	375520			15063	2108	12668	13029	15063	15063		
NLPIENTTDCLSTMASVCR	19	Unmodified	_NLPIENTTDCLSTMASVCR_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.50049	2180.98642	0.97206	0.001061	-0.99441	-0.0010854	-0.022359	-2.4405E-05	1091.49780219093	14.054	0.079822	14.054	14.001	14.081	0	171	49	1.20972836110953	0.0317824577719281	1.20972836110953	487.592545764088	0	12.8102225208978						236	10	3	NaN	NaN	NaN	0.002364	1	34460	54.912	42.742	1	38889			15064	3057	12669	13030	15064	15064		
NLPIYSEEIVEMYK	14	Unmodified	_NLPIYSEEIVEMYK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.431664	1726.84877	2.4201	0.0020921	-1.9672	-0.0017005	0.453	0.00039158	865.430653411967	15.783	0.28377	15.783	15.65	15.934	0	321	157	1.10999792833052	0.10427794050659	1.10999792833052	448.139126270152	0	42.100101230062						1538	33	4	NaN	NaN	NaN	0.00013948	1	25236	71.896	50.535	1	704160			15065	972	12670	13031	15065	15065		
NLPIYSEEIVEMYK	14	Oxidation (M)	_NLPIYSEEIVEM(Oxidation (M))YK_	NLPIYSEEIVEM(1)YK	NLPIYSEEIVEM(110)YK	0	1	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.429121	1742.84369	1.7945	0.0015655	1.7527	0.0015291	3.5471	0.0030946	872.93132890193	14.01	0.16848	14.01	13.93	14.099	0	234	34	1.16792504164217	0.0219330958171067	1.16792504164217	471.491546408413	0	8.85439467056125						501	20	5	NaN	NaN	NaN	6.7E-06	1	25678	110.58	99.794	1	134560			15066	972	12670	13032	15066	15066	351	
NLPLADQGSSHHITVK	16	Unmodified	_NLPLADQGSSHHITVK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.955017	1715.89548	3.4074	0.0029268	-2.3008	-0.0019763	1.1066	0.00095054	858.953217209481	5.6913	0.097606	5.6913	5.6292	5.7268	0	294	43	1.12800004657306	0.0279821102463456	1.12800004657306	455.430266012544	0	11.2977831444265						279	12	3	NaN	NaN	NaN	0.0016896	1	24939	42.495	37.678	1	54102			15067	718	12671	13033	15067	15067		
NLPLADQGSSHHITVK	16	Unmodified	_NLPLADQGSSHHITVK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.972437	1715.89548	0.76303	0.0004372	0.7424	0.00042537	1.5054	0.00086257	572.97278260845	5.6825	0.23058	5.6825	5.5937	5.8243	0	717	31	0.84338031290707	0.0203835468475623	0.84338031290707	510.770065559822	0	12.3447339241108						577	27	5	NaN	NaN	NaN	0.0051045	1	24940	30.862	26.615	1	248830			15068	718	12671	13033	15068	15068		
NLPLHELITPEFISTFIK	18	Unmodified	_NLPLHELITPEFISTFIK_			0	0	0	O75818	O75818	O75818	RPP40	Ribonuclease P protein subunit p40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.729502	2111.16668	0.71176	0.0005016	-1.5217	-0.0010724	-0.80993	-0.00057078	704.728246019139	19.8	0.062073	19.8	19.756	19.818	0	522	22	0.975277694896658	0.0141414531232522	0.975277694896658	589.764023351741	0	8.55153392069826						116	8	3	NaN	NaN	NaN	0.043847	1	33480	41.87	40.022	1	21862			15069	361	12672	13034	15069	15069		
NLPPEEQMISALPDIK	16	Unmodified	_NLPPEEQMISALPDIK_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.968945	1793.92334	1.9891	0.0017861	-0.40135	-0.0003604	1.5877	0.0014257	897.96882297267	15.615	0.27489	15.615	15.535	15.81	0	291	61	1.12999890578964	0.0399689530119671	1.12999890578964	456.078248183315	0	16.1318475425255						1466	32	5	NaN	NaN	NaN	0.0018433	1	27079	53.363	50.884	1	559950			15070	166	12673	13035	15070	15070		
NLPYGFIQELVR	12	Unmodified	_NLPYGFIQELVR_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.898451	1447.78235	0.35467	0.0002571	-0.66264	-0.00048035	-0.30797	-0.00022325	724.897551590691	18.266	0.18622	18.266	18.151	18.337	0	465	25	1.01360860968299	0.0161181521941178	1.01360860968299	409.851405619307	0	6.51735518980172						301	22	3	NaN	NaN	NaN	0.047914	1	16926	30.349	27.246	1	66679			15071	407	12674	13036	15071	15071		
NLQCLVIDEADR	12	Unmodified	_NLQCLVIDEADR_			0	0	0	Q9NVP1	Q9NVP1	Q9NVP1	DDX18	ATP-dependent RNA helicase DDX18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.35629	1444.69803	1.734	0.0012543	3.3131	0.0023965	5.047	0.0036508	723.357367877972	11.323	0.15966	11.323	11.279	11.438	0	474	40	1.00756305028564	0.0262046696285547	1.00756305028564	407.415107918647	0	10.5960399219319						326	19	3	NaN	NaN	NaN	2.0785E-05	1	16813	92.445	65.498	1	118670			15072	3072	12675	13037	15072	15072		
NLQDAMQVCR	10	Unmodified	_NLQDAMQVCR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.786989	1233.55943	1.7537	0.0010834	0.62374	0.00038534	2.3774	0.0014687	617.787570066819	7.1545	0.33693	7.1545	7.0836	7.4205	-1.7764E-15	594	52	0.926715457081489	0.0344482986469864	0.926715457081489	375.331522885534	0	13.9519982031034						814	39	4	NaN	NaN	NaN	1.9126E-14	1	10420	209.86	168.84	1	818190			15073	1129	12676	13038	15073	15073		
NLQDAMQVCR	10	Oxidation (M)	_NLQDAM(Oxidation (M))QVCR_	NLQDAM(1)QVCR	NLQDAM(67)QVCR	0	1	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.784447	1249.55434	2.7981	0.001751	-4.6975	-0.0029396	-1.8994	-0.0011886	625.78189065251	3.7938	0.10639	3.7938	3.7583	3.8647	-4.4409E-16	603	34	0.920633820089869	0.022302429094845	0.920633820089869	372.815578906833	0	9.03148769096009						179	13	3	NaN	NaN	NaN	0.0034748	1	10895	67.464	58.487	1	60752			15074	1129	12676	13039	15074	15074	406	
NLQEAEEWYK	10	Unmodified	_NLQEAEEWYK_			0	0	0	P08670;P41219	P08670	P08670	VIM;PRPH	Vimentin;Peripherin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.306592	1308.59863	1.3454	0.00088163	2.5656	0.0016813	3.911	0.0025629	655.30820595819	9.3011	0.31924	9.3011	9.1947	9.514	0	537	61	0.965173861991602	0.0404349276895257	0.965173861991602	390.659483222259	0	16.3662616419434						1151	37	5	NaN	NaN	NaN	1.7043E-07	1	12610	162.49	138.37	1	1802300			15075	588	12677	13040	15075	15075		
NLQEGNEVDSQSSIR	15	Unmodified	_NLQEGNEVDSQSSIR_			0	0	0	O75152	O75152	O75152	ZC3H11A	Zinc finger CCCH domain-containing protein 11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.397729	1674.78091	3.2775	0.0027479	-5.7355	-0.0048086	-2.458	-0.0020607	838.393154137793	5.1504	0.035471	5.1504	5.1238	5.1593	0	420	34	1.04379886199097	0.0221150800336967	1.04379886199097	421.516923486282	0	8.9307249106173						113	5	3	NaN	NaN	NaN	2.2523E-07	1	23752	118.26	106.91	1	39239			15076	306	12678	13041	15076	15076		
NLQEGQVTDPR	11	Unmodified	_NLQEGQVTDPR_			0	0	0	Q92600	Q92600	Q92600	RQCD1	Cell differentiation protein RCD1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.815116	1255.61568	2.4416	0.0015353	0.97904	0.00061564	3.4206	0.0021509	628.814461891423	4.3524	0.1596	4.3524	4.2726	4.4322	0	537	37	0.965173861991602	0.0242575920930522	0.965173861991602	390.831661437851	0	9.82272250995942						314	19	3	NaN	NaN	NaN	0.025203	1	11082	44.57	10.847	1	65164			15077	2417	12679	13042	15077	15077		
NLQEQTVQLQSELSR	15	Unmodified	_NLQEQTVQLQSELSR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.960497	1771.90644	2.2602	0.0020047	-2.5269	-0.0022413	-0.26671	-0.00023656	886.958194644515	11.545	0.1242	11.545	11.5	11.624	0	312	64	1.11600111266355	0.0419933988669257	1.11600111266355	450.471542809291	0	16.9505486694734						510	15	5	NaN	NaN	NaN	9.9766E-12	1	26474	146.37	127.83	1	194810			15078	667	12680	13043	15078	15078		
NLQEVLGEEK	10	Unmodified	_NLQEVLGEEK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.803685	1157.59282	0.92106	0.00053404	0.75087	0.00043536	1.6719	0.00096939	579.804581324647	8.3963	0.23945	8.3963	8.2632	8.5027	0	609	73	0.916577990479294	0.0486497581514337	0.916577990479294	371.495197179547	0	19.7180727498741						409	28	2	NaN	NaN	NaN	1.6949E-05	1	8282	102.55	61.521	1	215350			15079	1251	12681	13044	15079	15079		
NLQLFMENK	9	Unmodified	_NLQLFMENK_			0	0	0	P11387;Q969P6	P11387	P11387	TOP1;TOP1MT	DNA topoisomerase 1;DNA topoisomerase I, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.792066	1135.56958	1.04	0.00059154	-2.7803	-0.0015814	-1.7403	-0.00098987	568.791782417683	11.225	0.2572	11.225	11.146	11.403	0	621	49	0.908462957275599	0.0324646425332216	0.908462957275599	368.290196944359	0	13.1611415705322						690	30	4	NaN	NaN	NaN	0.00015486	1	7682	121.67	83.949	1	364230			15080	651	12682	13045	15080	15080		
NLQLLMDR	8	Unmodified	_NLQLLMDR_			0	0	0	O15372	O15372	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.773677	1001.5328	-0.086854	-4.3581E-05	-1.0357	-0.00051967	-1.1225	-0.00056325	501.773333358535	10.826	0.1685	10.826	10.755	10.924	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	345.763822704688	0	9.92655420150913						274	20	2	NaN	NaN	NaN	0.0033963	1	4325	79.809	44.176	1	66621			15081	169	12683	13046	15081	15081		
NLQLLMDRVDEMSQDIVK	18	Unmodified	_NLQLLMDRVDEMSQDIVK_			0	0	1	O15372	O15372	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.366018	2146.07622	-0.12337	-8.8376E-05	-1.5358	-0.0011002	-1.6592	-0.0011886	716.699501250969	18.435	0.070937	18.435	18.408	18.479	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	546.847472429521	0	12.273687522095						226	9	4	NaN	NaN	NaN	3.3671E-05	1	33969	59.997	48.317	1	48481			15082	169	12684	13047	15082	15082		
NLQLLMDRVDEMSQDIVK	18	Unmodified	_NLQLLMDRVDEMSQDIVK_			0	0	1	O15372	O15372	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.366018	2146.07622	0.33906	0.00024289	-1.3286	-0.00095174	-0.9895	-0.00070885	716.364910957742	18.435	0.05321	18.435	18.408	18.461	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	577.478592831248	0	11.008885876655						157	7	4	NaN	NaN	NaN	0.003196	1	33970	47.915	35.745	1	28887			15083	169	12684	13047	15083	15083		
NLQMWEEMK	9	Unmodified	_NLQMWEEMK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.775559	1207.53657	1.0688	0.00064639	0.90747	0.00054882	1.9763	0.0011952	604.77608308345	11.137	0.16846	11.137	11.083	11.252	0	561	43	0.948993180460448	0.028335804573887	0.948993180460448	384.445934198766	0	11.4790970946663						516	20	4	NaN	NaN	NaN	0.00065641	1	9662	76.572	57.085	1	275000			15084	565	12685	13048	15084	15084		
NLQNLLILTAIK	12	Unmodified	_NLQNLLILTAIK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.426845	1352.83914	0.79232	0.00053674	-0.17094	-0.0001158	0.62138	0.00042094	677.426687722261	18.098	0.20392	18.098	18.053	18.257	0	465	91	1.01360860968299	0.0604681893723227	1.01360860968299	410.123530318876	0	24.4664726211465						1070	24	5	NaN	NaN	NaN	1.4523E-12	1	13993	175.64	162.36	1	727550			15085	1503	12686	13049	15085	15085		
NLQYYDISAK	10	Unmodified	_NLQYYDISAK_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.806228	1213.5979	1.5837	0.0009626	0.082591	5.0199E-05	1.6663	0.0010128	607.806162066224	8.2632	0.39915	8.2632	8.139	8.5382	0	594	73	0.926715457081489	0.0486160685052341	0.926715457081489	375.399838326459	0	19.6937086971757						1438	46	4	NaN	NaN	NaN	5.5876E-05	1	9831	87.895	51.684	1	1179800			15086	1399	12687	13050	15086	15086		
NLSDIDLMAPQPGV	14	Unmodified	_NLSDIDLMAPQPGV_			0	0	0	Q96B49	Q96B49	Q96B49	TOMM6	Mitochondrial import receptor subunit TOM6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.368866	1468.72318	0.16333	0.00012011	-0.23679	-0.00017413	-0.073466	-5.4025E-05	735.368444631299	16.422	0.14188	16.422	16.342	16.484	0	456	40	1.01965166402748	0.0261829569110703	1.01965166402748	412.239262274472	0	10.5856178359486						268	17	3	NaN	NaN	NaN	0.0047692	1	17540	47.334	38.861	1	66433			15087	2481	12688	13051	15087	15087		
NLSELQDTSLQQLVSQR	17	Unmodified	_NLSELQDTSLQQLVSQR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.676237	1958.00688	-0.72547	-0.00047422	0.2663	0.00017407	-0.45918	-0.00030015	653.676695787292	14.87	0.07979	14.87	14.817	14.897	0	612	25	0.914549654013882	0.0162300673431094	0.914549654013882	553.323270246531	0	9.81955862013206						137	10	3	NaN	NaN	NaN	0.030005	1	30867	33.526	33.091	1	28807			15088	1974	12689	13052	15088	15088		
NLSELQDTSLQQLVSQR	17	Unmodified	_NLSELQDTSLQQLVSQR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.010718	1958.00688	0.75994	0.00074475	0.75626	0.00074115	1.5162	0.0014859	980.513721294434	14.87	0.11527	14.87	14.834	14.95	-1.7764E-15	210	46	1.18386433251387	0.0298718109844258	1.18386433251387	477.51156318023	0	12.0487920502753						308	14	4	NaN	NaN	NaN	6.976E-12	1	30868	155.38	143.7	1	98315			15089	1974	12689	13052	15089	15089		
NLSNEEMIQAADELEEMK	18	Unmodified	_NLSNEEMIQAADELEEMK_			0	0	0	Q15170	Q15170	Q15170	TCEAL1	Transcription elongation factor A protein-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.47192	2092.92929	1.755	0.0018383	1.6404	0.0017183	3.3954	0.0035566	1047.47462092477	16.129	0.079838	16.129	16.094	16.174	0	186	37	1.1997861197946	0.0238695716917889	1.1997861197946	483.713973671564	0	9.62341969321176						199	10	3	NaN	NaN	NaN	7.9521E-05	1	33228	81.578	78.683	1	38285			15090	1820	12690	13053	15090	15090		
NLSNPEMTSGSDK	13	Unmodified	_NLSNPEMTSGSDK_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.309006	1378.60346	2.3141	0.0015975	-3.2099	-0.0022159	-0.89583	-0.0006184	690.306702515681	4.0864	0.21281	4.0864	3.98	4.1928	0	549	31	0.957085760909907	0.0202230534711471	0.957085760909907	387.180217909233	0	8.18104977583704						328	25	3	NaN	NaN	NaN	0.014756	1	14752	45.939	27.603	1	66426			15091	156	12691	13054	15091	15091		
NLSPGAVESDVR	12	Unmodified	_NLSPGAVESDVR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.317491	1242.62043	1.3949	0.0008681	0.04966	3.0905E-05	1.4446	0.000899	622.317785379719	7.1014	0.16855	7.1014	7.0037	7.1723	0	558	37	0.951016745717027	0.0242777450705638	0.951016745717027	385.142771528372	0	9.83200145007584						513	20	4	NaN	NaN	NaN	0.00029612	1	10699	79.311	36.039	1	251270			15092	1241	12692	13055	15092	15092		
NLSQILSDREEIAHNMQSTLDDATDAWGIK	30	Unmodified	_NLSQILSDREEIAHNMQSTLDDATDAWGIK_			0	0	1	P27105	P27105	P27105	STOM	Erythrocyte band 7 integral membrane protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	843.659763	3370.60995	-0.19962	-0.00016841	-0.031153	-2.6283E-05	-0.23078	-0.0001947	843.910051900374	18.851	0.06204	18.851	18.825	18.887	0	585	22	0.932794566565362	0.0141806598395486	0.932794566565362	750.259511203616	0	11.4056999269827						144	8	5	NaN	NaN	NaN	0.00028683	1	38590	47.113	45.643	1	27323			15093	861	12693	13056	15093	15093		
NLSSDEATNPISR	13	Unmodified	_NLSSDEATNPISR_			0	0	0	Q7Z417	Q7Z417	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.341694	1402.66884	1.3772	0.00096726	-0.16898	-0.00011868	1.2082	0.00084858	702.341825503242	5.9219	0.11535	5.9219	5.8775	5.9929	0	546	40	0.959108205975751	0.0262917911447993	0.959108205975751	387.932264906837	0	10.634289252987						257	14	3	NaN	NaN	NaN	3.0094E-05	1	15537	103.76	86.29	1	65177			15094	2134	12694	13057	15094	15094		
NLSSNEAISLEEIR	14	Unmodified	_NLSSNEAISLEEIR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.904659	1573.79476	1.8461	0.0014545	-0.56813	-0.00044763	1.2779	0.0010069	787.904315068195	11.527	0.1863	11.527	11.483	11.669	0	408	46	1.0518390438467	0.0301444498017385	1.0518390438467	424.987358868751	0	12.1796297453848						622	22	4	NaN	NaN	NaN	9.2863E-17	1	20786	166.71	134.66	1	280470			15095	1465	12695	13058	15095	15095		
NLSTVMDEIHTVLK	14	Unmodified	_NLSTVMDEIHTVLK_			0	0	0	Q8IX12	Q8IX12	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.951874	1598.83379	-2.3472	-0.0012533	0.34402	0.00018369	-2.0032	-0.0010696	533.952089905183	16.723	0.13301	16.723	16.679	16.812	0	762	28	0.812773098473386	0.0183822106275564	0.812773098473386	492.521984212491	0	11.1392009276652						320	16	4	NaN	NaN	NaN	0.0010238	1	21545	66.953	48.446	1	106740			15096	2210	12696	13059	15096	15096		
NLSTVMDEIHTVLK	14	Unmodified	_NLSTVMDEIHTVLK_			0	0	0	Q8IX12	Q8IX12	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.424173	1598.83379	0.53246	0.00042619	0.79405	0.00063558	1.3265	0.0010618	800.424940874003	16.732	0.10642	16.732	16.688	16.794	0	300	31	1.12400150285141	0.0199954725049127	1.12400150285141	454.081992292947	0	8.07791090032902						318	13	4	NaN	NaN	NaN	1.1345E-06	1	21547	126.17	107.67	1	84582			15097	2210	12696	13059	15097	15097		
NLSVEDAAR	9	Unmodified	_NLSVEDAAR_			0	0	0	P04040	P04040	P04040	CAT	Catalase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.748713	973.482873	0.23293	0.00011361	0.89529	0.00043667	1.1282	0.00055029	487.749892847295	4.7691	0.31922	4.7691	4.645	4.9642	0	741	37	0.827064408645228	0.0244908762672863	0.827064408645228	335.960073761302	0	9.94838674138362						361	37	3	NaN	NaN	NaN	0.010996	1	3700	42.075	24.679	1	69327			15098	501	12697	13060	15098	15098		
NLTALGLNLVASGGTAK	17	Unmodified	_NLTALGLNLVASGGTAK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.456862	1598.89917	1.5188	0.0012158	1.7453	0.001397	3.2641	0.0026128	800.458332601212	15.003	0.20395	15.003	14.95	15.154	1.7764E-15	231	73	1.16991841121525	0.0478704989702736	1.16991841121525	472.63165639842	0	19.3390521971849						733	24	5	NaN	NaN	NaN	9.5191E-19	1	21556	172.92	133.88	1	354400			15099	929	12698	13061	15099	15099		
NLTEDNSQNQDLIAK	15	Unmodified	_NLTEDNSQNQDLIAK_			0	0	0	Q9UBB4	Q9UBB4	Q9UBB4	ATXN10	Ataxin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.915755	1701.81696	2.6569	0.0022635	-2.5337	-0.0021585	0.12321	0.00010497	851.912793626791	6.5249	0.22167	6.5249	6.4806	6.7023	0	351	76	1.08996939197032	0.0501369565243259	1.08996939197032	440.104552945649	0	20.2441490556964						744	26	4	NaN	NaN	NaN	2.7785E-06	1	24552	106.97	96.184	1	198820			15100	3166	12699	13062	15100	15100		
NLTELEDEHLAK	12	Unmodified	_NLTELEDEHLAK_			0	0	0	O15381	O15381	O15381	NVL	Nuclear valosin-containing protein-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.356813	1410.69907	2.0519	0.0014494	1.1017	0.00077816	3.1536	0.0022275	706.357346591248	7.4205	0.13298	7.4205	7.3851	7.5181	0	441	31	1.02971785871157	0.0201254424104516	1.02971785871157	416.468730304676	0	8.13972232936521						212	16	3	NaN	NaN	NaN	0.00054665	1	15781	88.24	77.538	1	54754			15101	170	12700	13063	15101	15101		
NLTEQNSYSNIPHEGK	16	Unmodified	_NLTEQNSYSNIPHEGK_			0	0	0	Q9NZB2;Q5T035	Q9NZB2	Q9NZB2	FAM120A;C9orf129	Constitutive coactivator of PPAR-gamma-like protein 1;Putative uncharacterized protein C9orf129	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.958745	1829.8544	0.95726	0.00058484	1.4009	0.00085592	2.3582	0.0014408	611.293855473238	5.4873	0.13294	5.4873	5.4254	5.5583	0	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	558.505788024357	0	9.81758598363467						180	16	4	NaN	NaN	NaN	0.028284	1	27960	25.705	22.99	1	47230			15102	3129	12701	13064	15102	15102		
NLTQDEMQR	9	Unmodified	_NLTQDEMQR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.764037	1133.51352	2.5655	0.0014566	0.2362	0.0001341	2.8017	0.0015907	567.764228776109	3.8204	0.24826	3.8204	3.7583	4.0066	0	633	43	0.900343422309015	0.0284420373903148	0.900343422309015	365.006472024492	0	11.5306309434716						295	29	2	NaN	NaN	NaN	0.065688	1	7617	30.593	25.284	1	112280			15103	1728	12702	13065	15103	15103		
NLTQYSWLLDGFPR	14	Unmodified	_NLTQYSWLLDGFPR_			0	0	0	Q9UIJ7	Q9UIJ7	Q9UIJ7	AK3	GTP:AMP phosphotransferase AK3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.435929	1708.85731	1.3653	0.001168	-0.37205	-0.00031826	0.99329	0.0008497	855.436700206224	18.798	0.15073	18.798	18.763	18.914	0	339	67	1.09798411722691	0.0440688699107803	1.09798411722691	443.325951464761	0	17.7934028158041						281	18	3	NaN	NaN	NaN	0.00022682	1	24725	56.938	50.91	1	52413			15104	3239	12703	13066	15104	15104		
NLVAFVSQEAGNR	13	Unmodified	_NLVAFVSQEAGNR_			0	0	0	Q9BT73	Q9BT73	Q9BT73	PSMG3	Proteasome assembly chaperone 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.86514	1403.71573	1.2873	0.0009048	0.5977	0.0004201	1.885	0.0013249	702.865884187832	12.29	0.097577	12.29	12.236	12.334	0	429	31	1.03776581230406	0.0201171086492766	1.03776581230406	419.7439927407	0	8.13674473251172						166	12	2	NaN	NaN	NaN	0.00044359	1	15579	61.577	48.982	1	51812			15105	2730	12704	13067	15105	15105		
NLVDFLTGEEVVCHVAR	17	Unmodified	_NLVDFLTGEEVVCHVAR_			0	0	0	Q9H9J2	Q9H9J2	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.331525	1956.97275	0.16509	0.00010786	-1.7174	-0.001122	-1.5523	-0.0010142	653.664594536734	16.626	0.14188	16.626	16.581	16.723	0	594	37	0.926715457081489	0.024324866464508	0.926715457081489	560.685947899712	0	14.7171504553716						437	17	5	NaN	NaN	NaN	3.4724E-10	1	30840	139.7	122.29	1	113850			15106	2937	12705	13068	15106	15106		
NLVDFLTGEEVVCHVAR	17	Unmodified	_NLVDFLTGEEVVCHVAR_			0	0	0	Q9H9J2	Q9H9J2	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.493649	1956.97275	0.56315	0.0005516	0.37938	0.0003716	0.94253	0.0009232	979.995162234882	16.626	0.097521	16.626	16.59	16.688	0	111	52	1.24942920585258	0.0337156554157727	1.24942920585258	503.959024142714	0	13.5992569423495						385	12	4	NaN	NaN	NaN	5.3195E-10	1	30841	119.79	104.84	1	92961			15107	2937	12705	13068	15107	15107		
NLVDNITGQR	10	Unmodified	_NLVDNITGQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.301644	1128.58874	0.64893	0.00036684	-1.9915	-0.0011258	-1.3426	-0.00075897	565.301384690859	8.8576	0.23063	8.8576	8.769	8.9996	0	660	37	0.882057989648486	0.0243958062014034	0.882057989648486	357.612170378221	0	9.89077510344538						557	27	4	NaN	NaN	NaN	0.00073679	1	7489	90.761	76.226	1	214160			15108	1816	12706	13069	15108	15108		
NLVDSYVAIINK	12	Unmodified	_NLVDSYVAIINK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.877185	1347.73982	0.99557	0.00067189	-1.3016	-0.0008784	-0.306	-0.00020651	674.877763875697	14.967	0.15963	14.967	14.914	15.074	-1.7764E-15	474	76	1.00756305028564	0.0503866600454252	1.00756305028564	407.69299725644	0	20.3880922884549						646	19	4	NaN	NaN	NaN	1.5455E-05	1	13841	83.358	59.237	1	149320			15109	1167	12707	13070	15109	15109		
NLVELAELELK	11	Unmodified	_NLVELAELELK_			0	0	0	Q9UNH7	Q9UNH7	Q9UNH7	SNX6	Sorting nexin-6;Sorting nexin-6, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.866285	1269.71802	-0.11336	-7.2084E-05	-1.3598	-0.00086463	-1.4731	-0.00093671	635.865988655442	16.954	0.12418	16.954	16.901	17.025	0	528	70	0.971237000454584	0.046451948393855	0.971237000454584	393.239325286087	0	18.8076986730057						466	15	3	NaN	NaN	NaN	0.0054062	1	11510	43.168	25.437	1	115870			15110	3296	12708	13071	15110	15110		
NLVEQHIQDIVVHYTFNK	18	Unmodified	_NLVEQHIQDIVVHYTFNK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.051527	2196.13275	0.80212	0.000588	0.64733	0.00047452	1.4494	0.0010625	733.386523766984	15.065	0.2128	15.065	15.003	15.216	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	595.719172405908	0	13.425442850505						691	25	6	NaN	NaN	NaN	3.9253E-14	1	34641	146.75	138	1	427360			15111	518	12709	13072	15111	15111		
NLVHVAHDLIQK	12	Unmodified	_NLVHVAHDLIQK_			0	0	0	Q9BPY3	Q9BPY3	Q9BPY3	FAM118B	Protein FAM118B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.933254	1385.77793	-1.2254	-0.00056726	-0.35485	-0.00016427	-1.5802	-0.00073153	462.932805002371	7.9881	0.071007	7.9881	7.9527	8.0237	8.8818E-16	813	25	0.778007628350577	0.0163795890035051	0.778007628350577	472.076046595588	0	9.93873496848397						138	9	3	NaN	NaN	NaN	0.0026749	1	15030	85.821	79.558	1	35199			15112	2689	12710	13073	15112	15112		
NLVMNTGPYYFVK	13	Unmodified	_NLVMNTGPYYFVK_			0	0	0	O75818	O75818	O75818	RPP40	Ribonuclease P protein subunit p40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.392144	1544.76974	2.038	0.0015761	-2.1924	-0.0016956	-0.15445	-0.00011945	773.389240596875	13.886	0.16847	13.886	13.824	13.992	0	393	37	1.0618830335572	0.0240939446089616	1.0618830335572	429.115866428485	0	9.73656569492374						288	20	3	NaN	NaN	NaN	0.0067468	1	19880	44.598	39.21	1	66028			15113	361	12711	13074	15113	15113		
NLVPEEADEHLFALEK	16	Unmodified	_NLVPEEADEHLFALEK_			0	0	0	Q8WUX2	Q8WUX2	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.467623	1852.92069	1.4689	0.0013623	0.062945	5.8379E-05	1.5318	0.0014207	927.969147689578	13.176	0.10641	13.176	13.123	13.23	0	183	37	1.20177511391933	0.0238695716917889	1.20177511391933	484.929317899104	0	9.63163156315773						294	13	4	NaN	NaN	NaN	0.055547	1	28558	26.517	20.312	1	78156			15114	2374	12712	13075	15114	15114		
NLVPLLLAPENLVEK	15	Unmodified	_NLVPLLLAPENLVEK_			0	0	0	Q8NHH9	Q8NHH9	Q8NHH9	ATL2	Atlastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.495455	1660.97636	1.723	0.0014327	-0.49958	-0.0004154	1.2235	0.0010173	831.494921160267	18.816	0.08869	18.816	18.772	18.86	0	348	67	1.09197348738011	0.0440628000558998	1.09197348738011	441.001320153442	0	17.7950776450901						420	11	3	NaN	NaN	NaN	0.0016959	1	23380	38.584	34.601	1	93506			15115	2323	12713	13076	15115	15115		
NLVQCGDFPHLLVYGPSGAGK	21	Unmodified	_NLVQCGDFPHLLVYGPSGAGK_			0	0	0	P40938	P40938	P40938	RFC3	Replication factor C subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.708884	2228.10482	0.79187	0.00058892	-1.1372	-0.00084571	-0.34528	-0.00025679	744.042536166593	14.453	0.10642	14.453	14.4	14.506	0	549	64	0.957085760909907	0.0424948927887633	0.957085760909907	578.564732435669	0	25.6884464071841						554	13	5	NaN	NaN	NaN	1.0697E-07	1	34971	86.952	82.579	1	137140			15116	1025	12714	13077	15116	15116		
NLVQEWLAK	9	Unmodified	_NLVQEWLAK_			0	0	0	P09923;P05187;P10696	P09923	P09923	ALPI;ALPP;ALPPL2	Intestinal-type alkaline phosphatase;Alkaline phosphatase, placental type;Alkaline phosphatase, placental-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.808574	1099.60259	0.3558	0.00019598	-1.0914	-0.00060118	-0.73564	-0.0004052	550.807975201524	14.205	0.20394	14.205	14.134	14.338	0	651	79	0.888155670855968	0.0528649499022339	0.888155670855968	360.198867855829	0	21.4398170600971						835	24	3	NaN	NaN	NaN	4.6677E-05	1	6713	133.98	82.113	1	831220			15117	613	12715	13078	15117	15117		
NLVTGDHIPTPQDLPQR	17	Unmodified	_NLVTGDHIPTPQDLPQR_			0	0	0	O43768	O43768	O43768	ENSA	Alpha-endosulfine	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.334035	1899.98027	-1.6631	-0.001055	0.28183	0.00017878	-1.3813	-0.0008762	634.668573423499	10.347	0.1596	10.347	10.241	10.401	0	792	31	0.792332785124922	0.0204488487727063	0.792332785124922	479.482217265193	0	12.3746732864424						374	19	4	NaN	NaN	NaN	1.1429E-06	1	29596	54.556	44.978	1	81792			15118	228	12716	13079	15118	15118		
NLYIISVK	8	Unmodified	_NLYIISVK_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.289485	948.564418	0.0308	1.4639E-05	1.3922	0.00066169	1.423	0.00067633	475.288748025849	11.057	0.1685	11.057	10.995	11.163	0	717	76	0.84338031290707	0.0509836920700807	0.84338031290707	342.713045354816	0	20.7175530485674						1061	20	5	NaN	NaN	NaN	0.058657	1	3225	37.722	29.719	1	488800			15119	1400	12717	13080	15119	15119		
NLYSDDIPHALR	12	Unmodified	_NLYSDDIPHALR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.908886	1412.70483	-1.0021	-0.00047291	1.4432	0.00068104	0.44104	0.00020813	471.909442262759	9.4076	0.1862	9.4076	9.3278	9.514	0	726	43	0.837263974740672	0.0285568061062612	0.837263974740672	507.935808151739	0	17.3243144640362						428	22	4	NaN	NaN	NaN	0.0045911	1	15850	57.032	52.505	1	159330			15120	1304	12718	13081	15120	15120		
NLYSDDIPHALR	12	Unmodified	_NLYSDDIPHALR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.35969	1412.70483	1.4428	0.0010206	1.2763	0.00090277	2.719	0.0019233	707.360545750125	9.4076	0.23948	9.4076	9.3011	9.5406	0	444	37	1.02770517576159	0.0241505321586708	1.02770517576159	415.648972030268	0	9.7675326567238						606	28	4	NaN	NaN	NaN	4.5448E-05	1	15851	94.66	71.607	1	229920			15121	1304	12718	13081	15121	15121		
NMAEQIIQEIYSQIQSK	17	Unmodified	_NMAEQIIQEIYSQIQSK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.01187	2022.00919	0.40829	0.0004132	0.85367	0.00086392	1.262	0.0012771	1012.51470653782	20.119	0.070941	20.119	20.111	20.182	0	63	91	1.28111162701928	0.0594127212814934	1.28111162701928	516.621114204391	0	23.9587758154802						434	9	5	NaN	NaN	NaN	1.0419E-18	1	32024	183.7	151.9	1	376480			15122	888	12719	13082	15122	15122		
NMAEQIIQEIYSQIQSK	17	Unmodified	_NMAEQIIQEIYSQIQSK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.01034	2022.00919	0.37774	0.00025498	1.245	0.00084039	1.6227	0.0010954	675.346035350126	20.119	0.079795	20.119	20.111	20.19	0	600	37	0.922661313351899	0.0243282375267269	0.922661313351899	558.106748105537	0	14.7158587194413						272	10	5	NaN	NaN	NaN	3.885E-20	1	32026	251.02	204.95	1	355440			15123	888	12719	13082	15123	15123		
NMAEQIIQEIYSQIQSK	17	Oxidation (M)	_NM(Oxidation (M))AEQIIQEIYSQIQSK_	NM(1)AEQIIQEIYSQIQSK	NM(120)AEQIIQEIYSQIQSK	0	1	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.00933	2038.00411	1.5212	0.0015517	-2.9049	-0.002963	-1.3836	-0.0014113	1020.50751471778	19.747	0.070933	19.747	19.703	19.774	0	213	106	1.18187287897418	0.0696148947046067	1.18187287897418	476.576598375391	0	28.0714028596533						548	9	5	NaN	NaN	NaN	1.6093E-09	1	32306	117.03	103.26	1	133320			15124	888	12719	13083	15124	15124	303	
NMAEQIIQEIYSQIQSK	17	Oxidation (M)	_NM(Oxidation (M))AEQIIQEIYSQIQSK_	NM(1)AEQIIQEIYSQIQSK	NM(120)AEQIIQEIYSQIQSK	0	1	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	680.341978	2038.00411	0.59338	0.0004037	-0.79939	-0.00054386	-0.20601	-0.00014016	680.67581721209	19.747	0.13301	19.747	19.72	19.853	0	603	46	0.920633820089869	0.0304208382695857	0.920633820089869	556.85057502955	0	18.4002161485291						355	16	5	NaN	NaN	NaN	5.9252E-05	1	32309	119.79	114.97	1	213270			15125	888	12719	13083	15125	15125	303	
NMAEQIIQEIYSQIQSK	17	Oxidation (M)	_NM(Oxidation (M))AEQIIQEIYSQIQSK_	NM(1)AEQIIQEIYSQIQSK	NM(96)AEQIIQEIYSQIQSK	0	1	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.00933	2038.00411	0.2673	0.00027265	-0.084875	-8.6573E-05	0.18243	0.00018608	1020.00979234398	19.747	0.044322	19.747	19.729	19.774	0	66	61	1.27913350869533	0.0395921875066181	1.27913350869533	515.795814967705	0	15.9650923711314						207	6	3	NaN	NaN	NaN	6.1182E-06	1	32310	96.27	90.066	1	45180			15126	888	12719	13083	15126	15126	303	
NMDPLNDNIATLLHQSSDK	19	Unmodified	_NMDPLNDNIATLLHQSSDK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	709.34427	2125.01098	0.61033	0.00043294	-0.34185	-0.00024249	0.26848	0.00019045	709.678545568492	14.861	0.15074	14.861	14.817	14.967	0	528	76	0.971237000454584	0.0505122119297003	0.971237000454584	587.295571066866	0	30.5441394193374						834	18	6	NaN	NaN	NaN	1.0942E-10	1	33682	131.06	122.69	1	431750			15127	972	12720	13084	15127	15127		
NMDPLNDNIATLLHQSSDK	19	Oxidation (M)	_NM(Oxidation (M))DPLNDNIATLLHQSSDK_	NM(1)DPLNDNIATLLHQSSDK	NM(92)DPLNDNIATLLHQSSDK	0	1	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.675909	2141.0059	1.267	0.00090547	-0.63365	-0.00045285	0.63332	0.00045262	715.010070035944	13.62	0.14185	13.62	13.558	13.7	0	516	34	0.979317271586824	0.0222161383936255	0.979317271586824	592.152916074899	0	13.43318607298						428	17	4	NaN	NaN	NaN	2.5934E-05	1	33896	92.178	87.362	1	112380			15128	972	12720	13085	15128	15128	352	
NMFHPMDFEDDPLVLNEIR	19	Unmodified	_NMFHPMDFEDDPLVLNEIR_			0	0	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.029406	2331.06639	-0.077224	-6.0083E-05	-0.1332	-0.00010363	-0.21042	-0.00016372	778.363834868828	17.397	0.097528	17.397	17.353	17.45	0	600	43	0.922661313351899	0.0283908138186021	0.922661313351899	557.6023561085	0	17.1577419016078						444	12	6	NaN	NaN	NaN	1.342E-14	1	35903	117.8	115.56	1	108170			15129	224	12721	13086	15129	15129		
NMFHPMDFEDDPLVLNEIR	19	Oxidation (M)	_NM(Oxidation (M))FHPMDFEDDPLVLNEIR_	NM(0.902)FHPM(0.098)DFEDDPLVLNEIR	NM(9.7)FHPM(-9.7)DFEDDPLVLNEIR	0	1	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	783.361044	2347.0613	0.21351	0.00016726	-1.4128	-0.0011068	-1.1993	-0.0009395	783.694301854171	16.12	0.070978	16.12	16.094	16.165	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	560.029843518531	0	9.79859369276119						119	9	3	NaN	NaN	NaN	2.4294E-05	1	36015	56.473	54.503	2	23201			15130	224	12721	13087	15130	15130	44	
NMFLVGEGDSVITQVLNK	18	Unmodified	_NMFLVGEGDSVITQVLNK_			0	0	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.511508	1963.00846	0.74764	0.00073456	0.68836	0.00067632	1.436	0.0014109	983.014099417617	18.869	0.12415	18.869	18.789	18.914	0	192	43	1.1958073123591	0.0278631320749874	1.1958073123591	482.320113525309	0	11.2383900706095						318	15	4	NaN	NaN	NaN	6.6645E-14	1	30986	131.06	126.25	1	72396			15131	336	12722	13088	15131	15131		
NMFLVGEGDSVITQVLNK	18	Oxidation (M)	_NM(Oxidation (M))FLVGEGDSVITQVLNK_	NM(1)FLVGEGDSVITQVLNK	NM(49)FLVGEGDSVITQVLNK	0	1	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.508965	1979.00338	0.76332	0.00075607	0.56152	0.00055619	1.3248	0.0013123	990.509598851526	17.264	0.14189	17.264	17.176	17.317	0	186	34	1.1997861197946	0.0218849460359061	1.1997861197946	483.897476537336	0	8.82663166893752						216	17	2	NaN	NaN	NaN	0.0057463	1	31271	49.097	48.215	1	61773			15132	336	12722	13089	15132	15132	54	
NMGADLCR	8	Unmodified	_NMGADLCR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.704937	935.39532	-0.091356	-4.2819E-05	4.3676	0.0020471	4.2762	0.0020043	468.706324260915	4.1573	0.19507	4.1573	4.113	4.3081	0	753	25	0.81889964927511	0.0163340619501384	0.81889964927511	332.832059284839	0	6.63878593691317						175	23	2	NaN	NaN	NaN	0.026462	1	2974	49.325	33.827	1	41076			15133	1531	12723	13090	15133	15133		
NMIEEHSQLK	10	Unmodified	_NMIEEHSQLK_			0	0	0	O75962	O75962	O75962	TRIO	Triple functional domain protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.803162	1227.59177	0.32984	0.00020278	-9.6067	-0.0059062	-9.2768	-0.0057034	614.795690938594	15.145	0.11528	15.145	15.109	15.225	0	600	16	0.922661313351899	0.010133253213463	0.922661313351899	373.709689085029	0	4.10431742723216						124	14	3	NaN	NaN	NaN	0.072173	1	10225	27.736	10.341	1	38532			15134	374	12724	13091	15134	15134		
NMIENSMFEEEPDVVDLAK	19	Unmodified	_NMIENSMFEEEPDVVDLAK_			0	0	0	Q9UIQ6	Q9UIQ6	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.50322	2208.99189	-0.0037039	-4.0946E-06	4.2579	0.0047072	4.2542	0.0047031	1105.50813530216	16.289	0.079802	16.289	16.262	16.342	0	105	25	1.25339330680955	0.0158542324732085	1.25339330680955	505.151562847869	0	6.38968651586362						77	10	2	NaN	NaN	NaN	0.0025499	1	34770	58.508	54.202	1	16167			15135	3241	12725	13092	15135	15135		
NMITGTAPLDGCILVVAANDGPMPQTR	27	Unmodified	_NMITGTAPLDGCILVVAANDGPMPQTR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	938.131195	2811.37175	1.3057	0.0012249	1.7936	0.0016826	3.0993	0.0029075	938.467271849954	17.486	0.15074	17.486	17.406	17.557	0	216	79	1.17988115188462	0.0518454593782931	1.17988115188462	712.328970697968	0	31.3006294365437						700	18	5	NaN	NaN	NaN	3.3414E-06	1	37926	103.04	95.038	1	157430			15136	1131	12726	13093	15136	15136		
NMITGTSQADCAVLIVAAGVGEFEAGISK	29	Unmodified	_NMITGTSQADCAVLIVAAGVGEFEAGISK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	970.484291	2908.43104	1.5227	0.0014778	0.75997	0.00073753	2.2827	0.0022153	970.819718511395	20.128	0.11526	20.128	20.111	20.226	0	153	91	1.22165005014568	0.059551302107798	1.22165005014568	737.424915669762	0	35.9469669154687						859	14	6	NaN	NaN	NaN	1.458E-21	1	38083	164.13	148.83	1	479080			15137	1446	12727	13094	15137	15137		
NMITGTSQADCAVLIVAAGVGEFEAGISK	29	Oxidation (M)	_NM(Oxidation (M))ITGTSQADCAVLIVAAGVGEFEAGISK_	NM(1)ITGTSQADCAVLIVAAGVGEFEAGISK	NM(130)ITGTSQADCAVLIVAAGVGEFEAGISK	0	1	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	975.815929	2924.42596	1.2488	0.0012186	1.803	0.0017594	3.0517	0.0029779	976.152181605791	20.084	0.14188	20.084	20.075	20.217	0	153	64	1.22165005014568	0.0416944646743262	1.22165005014568	737.405712819649	0	25.1673844241554						300	17	4	NaN	NaN	NaN	2.5008E-15	1	38110	126.04	125.31	1	173650			15138	1446	12727	13095	15138	15138	515	
NMITQYWPDR	10	Unmodified	_NMITQYWPDR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.311155	1322.60776	1.3242	0.00087703	0.34836	0.00023073	1.6726	0.0011078	662.311852077688	12.839	0.27492	12.839	12.706	12.981	0	555	37	0.953040030838688	0.0242743844973287	0.953040030838688	385.70556688854	0	9.8241048963842						426	32	3	NaN	NaN	NaN	0.0068197	1	13057	47.561	43.668	1	80322			15139	429	12728	13096	15139	15139		
NMLFSGTNIAAGK	13	Unmodified	_NMLFSGTNIAAGK_			0	0	0	P16615;O14983	P16615	P16615	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.339912	1322.66527	1.5436	0.0010224	-0.72502	-0.00048021	0.81856	0.00054217	662.340138538016	10.906	0.23946	10.906	10.809	11.048	0	522	67	0.975277694896658	0.0444046531951731	0.975277694896658	394.705216011288	0	17.9710336071659						595	28	4	NaN	NaN	NaN	0.020749	1	13070	30.349	27.246	1	141420			15140	730	12729	13097	15140	15140		
NMLLTLEQEAK	11	Unmodified	_NMLLTLEQEAK_			0	0	0	Q9HD33	Q9HD33	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.34212	1288.66969	1.288	0.00083121	8.0942	0.0052235	9.3822	0.0060547	645.849366326708	13.23	0.23944	13.23	13.132	13.371	0	522	94	0.975277694896658	0.0625832085547734	0.975277694896658	394.81281389142	0	25.3349920757512						868	28	2	NaN	NaN	NaN	0.026044	1	12026	51.872	23.776	1	460930			15141	2969	12730	13098	15141	15141		
NMLQFNLQILPK	12	Unmodified	_NMLQFNLQILPK_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.910504	1457.80646	0.68574	0.00050053	-1.2096	-0.0008829	-0.52387	-0.00038238	729.910264671605	17.646	0.15074	17.646	17.575	17.725	0	456	46	1.01965166402748	0.0302027620184235	1.01965166402748	412.268075389315	0	12.2116552231129						530	18	4	NaN	NaN	NaN	2.5228E-05	1	17209	90.263	72.532	1	136060			15142	168	12731	13099	15142	15142		
NMLTEELYGNTFQLYK	16	Unmodified	_NMLTEELYGNTFQLYK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.477134	1962.93971	0.68727	0.00067523	2.4353	0.0023926	3.1226	0.0030678	982.48094107181	17.114	0.15072	17.114	17.06	17.211	0	204	34	1.18784641916898	0.0218969686057855	1.18784641916898	479.109257537553	0	8.8319838337186						316	18	4	NaN	NaN	NaN	8.6863E-18	1	30980	168.43	143.5	1	63713			15143	1842	12732	13100	15143	15143		
NMMAACDPR	9	Unmodified	_NMMAACDPR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q13509;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q13509;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.217354	1064.42016	2.0043	0.0010687	0.14599	7.7847E-05	2.1503	0.0011466	533.218136287068	4.1484	0.53203	4.1484	4.0686	4.6007	0	657	82	0.884090832094921	0.0549172729144046	0.884090832094921	358.696973385859	0	22.2812621349377						1727	61	5	NaN	NaN	NaN	4.4257E-05	1	5822	125.5	116.73	1	1540400			15144	1449;560;512;2761;2745;1675;1936	12733	13101	15144	15144		
NMMAACDPR	9	Oxidation (M)	_NMM(Oxidation (M))AACDPR_	NM(0.008)M(0.992)AACDPR	NM(-21)M(21)AACDPR	0	1	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885;Q13509;Q9BUF5	P04350;P07437;P68371;Q3ZCM7;Q9BVA1;Q13509;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A;TUBB3;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.214811	1080.41507	1.8827	0.001019	-0.74104	-0.00040106	1.1417	0.0006179	541.214779425496	2.6764	0.47887	2.6764	2.5345	3.0134	0	672	40	0.873923798053065	0.0264453027366778	0.873923798053065	354.504905694408	0	10.7274679710196						855	55	4	NaN	NaN	NaN	0.04482	1	6210	54.436	50.543	2	218800			15145	1449;560;512;2761;2745;1675;1936	12733	13102	15145	15145	91	
NMPLQHLLEQIK	12	Unmodified	_NMPLQHLLEQIK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.60615	1462.79662	-2.2177	-0.0010836	0.20736	0.00010132	-2.0103	-0.00098224	488.60637848174	14.888	0.20396	14.888	14.755	14.959	0	846	40	0.755468431110051	0.026644658335389	0.755468431110051	458.161633991212	0	16.1589282852523						411	24	3	NaN	NaN	NaN	0.0041237	1	17361	60.547	47.274	1	88402			15146	718	12734	13103	15146	15146		
NMPLQHLLEQIK	12	Unmodified	_NMPLQHLLEQIK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.60615	1462.79662	-2.0561	-0.0010046	0.54981	0.00026864	-1.5063	-0.00073599	488.606305004791	14.905	0.15961	14.905	14.826	14.985	0	768	25	0.808687310729125	0.0163454259019459	0.808687310729125	490.436771709345	0	9.9128523536952						235	19	3	NaN	NaN	NaN	0.00458	1	17362	37.749	35.078	1	51278			15147	718	12734	13103	15147	15147		
NMQNVEHVPLSLDR	14	Unmodified	_NMQNVEHVPLSLDR_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.278873	1650.81479	0.29907	0.00016487	-0.48873	-0.00026943	-0.18966	-0.00010456	551.278741077943	9.1504	0.17735	9.1504	9.0972	9.2745	0	693	58	0.85967808974117	0.0387045454372709	0.85967808974117	520.804614415125	0	23.4477371275561						850	21	5	NaN	NaN	NaN	0.00013376	1	23075	117.21	113.23	1	505650			15148	781	12735	13104	15148	15148		
NMQNVEHVPLSLDR	14	Unmodified	_NMQNVEHVPLSLDR_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.414671	1650.81479	2.9349	0.0024254	-1.5001	-0.0012397	1.4348	0.0011857	826.413453400608	9.1592	0.17733	9.1592	9.106	9.2834	0	336	46	1.09998710857178	0.0300490171163135	1.09998710857178	444.260304083497	0	12.1361290304909						388	21	3	NaN	NaN	NaN	0.0027868	1	23076	44.045	43.238	1	118190			15149	781	12735	13104	15149	15149		
NMSGSLYEMVSR	12	Unmodified	_NMSGSLYEMVSR_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.313037	1372.61152	0.51438	0.00035354	1.8521	0.001273	2.3665	0.0016265	687.314490173273	11.784	0.13303	11.784	11.731	11.864	0	513	40	0.981336640919867	0.0262518066023084	0.981336640919867	397.007874232424	0	10.6203860116482						327	16	3	NaN	NaN	NaN	0.00052028	1	14559	64.906	58.215	1	80628			15150	1579	12736	13105	15150	15150		
NMSVIAHVDHGK	12	Unmodified	_NMSVIAHVDHGK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.555678	1306.6452	0.28733	0.00012543	0.033547	1.4645E-05	0.32088	0.00014008	436.555995317845	3.7938	0.61182	3.7938	3.7228	4.3347	-4.4409E-16	870	58	0.739054571787983	0.039001958189777	0.739054571787983	448.7080699865	0	23.6795685367189						1923	70	6	NaN	NaN	NaN	0.00010497	1	12554	94.804	85.29	1	1983100			15151	679	12737	13106	15151	15151		
NMSVIAHVDHGK	12	Unmodified	_NMSVIAHVDHGK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.329879	1306.6452	3.4387	0.0022501	-1.6987	-0.0011115	1.7401	0.0011386	654.328883485523	3.7938	0.3459	3.7938	3.7494	4.0953	0	519	79	0.97729762293174	0.0525654233619509	0.97729762293174	395.572838699725	0	21.2764804178717						901	40	3	NaN	NaN	NaN	1.4321E-16	1	12555	150.44	114.2	1	540640			15152	679	12737	13106	15152	15152		
NMSVIAHVDHGK	12	Oxidation (M)	_NM(Oxidation (M))SVIAHVDHGK_	NM(1)SVIAHVDHGK	NM(57)SVIAHVDHGK	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.887316	1322.64012	-0.27093	-0.00011972	0.4869	0.00021515	0.21596	9.5431E-05	441.887709469695	2.4547	0.28375	2.4547	2.4193	2.703	0	861	31	0.745211914437924	0.020520185688865	0.745211914437924	452.389259593999	0	12.4570091146742						438	33	4	NaN	NaN	NaN	0.002473	1	13066	57.293	42.53	1	107410			15153	679	12737	13107	15153	15153	210	
NMYELHK	7	Unmodified	_NMYELHK_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.726195	933.437837	-0.76649	-0.00035851	0.91276	0.00042692	0.14627	6.8413E-05	467.727093172725	3.4834	0.23066	3.4834	3.4479	3.6785	0	798	31	0.788241307691771	0.0204602376573505	0.788241307691771	320.381081831661	0	8.31607403878672						379	27	3	NaN	NaN	NaN	0.03477	1	2931	60.709	33.004	1	95413			15154	72	12738	13108	15154	15154		
NNALNPEEMR	10	Unmodified	_NNALNPEEMR_			0	0	0	O60684	O60684	O60684	KPNA6	Importin subunit alpha-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.277312	1186.54007	1.7928	0.0010654	2.2794	0.0013546	4.0721	0.00242	594.278488290173	5.7002	0.20398	5.7002	5.5583	5.7623	0	597	34	0.924688525662974	0.0222962488144068	0.924688525662974	374.674776577466	0	9.03422267196845						333	24	3	NaN	NaN	NaN	0.006752	1	9047	52.591	48.388	1	80828			15155	274	12739	13109	15155	15155		
NNASTDYDLSDK	12	Unmodified	_NNASTDYDLSDK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.791503	1341.56845	2.7499	0.0018474	-0.087603	-5.8851E-05	2.6623	0.0017885	671.791672567517	4.5031	0.24826	4.5031	4.4499	4.6982	0	567	70	0.944945209309785	0.0465613677067455	0.944945209309785	382.373617935932	0	18.8411332748889						1124	29	5	NaN	NaN	NaN	3.6814E-11	1	13648	172.1	128.36	1	874720			15156	1010	12740	13110	15156	15156		
NNDGYIDYAEFAK	13	Unmodified	_NNDGYIDYAEFAK_			0	0	0	Q8NI22	Q8NI22	Q8NI22	MCFD2	Multiple coagulation factor deficiency protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.33862	1518.66269	1.5696	0.0011934	2.1911	0.001666	3.7608	0.0028594	760.339475816776	11.598	0.1508	11.598	11.545	11.695	0	417	37	1.04580932352505	0.0241238779184587	1.04580932352505	422.684856495686	0	9.75015009592124						537	18	5	NaN	NaN	NaN	0.00019391	1	19078	86.838	80.091	1	237390			15157	2327	12741	13111	15157	15157		
NNDLQDNYLSEQNK	14	Unmodified	_NNDLQDNYLSEQNK_			0	0	0	Q86V48	Q86V48	Q86V48	LUZP1	Leucine zipper protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.884455	1693.75436	2.0444	0.0017334	-7.611	-0.0064532	-5.5665	-0.0047198	847.880256999198	6.9683	0.12411	6.9683	6.9328	7.0569	0	375	34	1.07392668217569	0.0220663300779218	1.07392668217569	433.643568041293	0	8.91021916801719						213	15	3	NaN	NaN	NaN	0.0019738	1	24301	69.641	50.443	1	48166			15158	2171	12742	13112	15158	15158		
NNEDISIIPPLFTVSVDHR	19	Unmodified	_NNEDISIIPPLFTVSVDHR_			0	0	0	P51571	P51571	P51571	SSR4	Translocon-associated protein subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.711171	2165.11168	0.70028	0.0005061	0.60739	0.00043897	1.3077	0.00094507	723.04567984188	17.991	0.35466	17.991	17.761	18.115	0	483	43	1.00151498427745	0.0282340678314075	1.00151498427745	605.53153639101	0	17.0707565447507						1187	41	5	NaN	NaN	NaN	8.0685E-06	1	34254	117.03	111.42	1	503660			15159	1190	12743	13113	15159	15159		
NNEESPTATVAEQGEDITSK	20	Unmodified	_NNEESPTATVAEQGEDITSK_			0	0	0	Q13451	Q13451	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.48493	2118.9553	2.0413	0.0021647	-0.7011	-0.0007435	1.3402	0.0014212	1060.98533252521	7.997	0.12418	7.997	7.9261	8.0502	0	168	37	1.21171599086077	0.023853197519079	1.21171599086077	488.484157330404	0	9.61603971361785						357	15	3	NaN	NaN	NaN	8.5653E-16	1	33600	100.98	98.434	1	74868			15160	1670	12744	13114	15160	15160		
NNEFIVIHNGIITNYK	16	Unmodified	_NNEFIVIHNGIITNYK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.999425	1887.9843	1.1979	0.0011321	0.38021	0.0003593	1.5782	0.0014914	945.501276353024	12.121	0.053217	12.121	12.094	12.148	0	171	34	1.20972836110953	0.021866930737948	1.20972836110953	488.071168614312	0	8.82232638531337						121	7	3	NaN	NaN	NaN	0.070432	1	29332	36.46	34.618	1	20302			15161	1558	12745	13115	15161	15161		
NNFEGEVTK	9	Unmodified	_NNFEGEVTK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.248546	1036.48254	1.974	0.001025	2.1175	0.0010995	4.0914	0.0021245	519.249620414926	4.0066	0.45227	4.0066	3.9445	4.3968	0	705	61	0.851531465363931	0.0407274835895337	0.851531465363931	345.605771343116	0	16.5298100579398						775	52	3	NaN	NaN	NaN	0.00015632	1	5141	88.921	56.793	1	498100			15162	554	12746	13116	15162	15162		
NNFSDTGNFGFGIQEHIDLGIK	22	Unmodified	_NNFSDTGNFGFGIQEHIDLGIK_			0	0	0	P62913	P62913	P62913	RPL11	60S ribosomal protein L11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.392389	2422.15534	1.0853	0.00087731	-1.313	-0.0010614	-0.22771	-0.00018408	808.725665892311	15.978	0.31923	15.978	15.925	16.245	0	504	55	0.987393073566096	0.036351175801219	0.987393073566096	596.589520627486	0	21.9636243417935						1062	37	4	NaN	NaN	NaN	1.8381E-11	1	36451	122.13	120.5	1	217690			15163	1415	12747	13117	15163	15163		
NNIAYGLQSCEDDK	14	Unmodified	_NNIAYGLQSCEDDK_			0	0	0	Q03519	Q03519	Q03519	TAP2	Antigen peptide transporter 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.856851	1625.69915	2.4628	0.0020043	0.36468	0.0002968	2.8274	0.0023011	813.857776831336	6.8796	0.11524	6.8796	6.8264	6.9417	0	399	43	1.0578662689527	0.0281173586506349	1.0578662689527	427.30356033185	0	11.3574350663799						285	14	3	NaN	NaN	NaN	8.1732E-08	1	22347	108.24	101.98	1	64937			15164	1539	12748	13118	15164	15164		
NNLAGAEELFAR	12	Unmodified	_NNLAGAEELFAR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.833308	1303.65206	0.47862	0.00031246	-0.9828	-0.00064161	-0.50418	-0.00032915	652.83383548686	11.97	0.2217	11.97	11.899	12.121	0	537	58	0.965173861991602	0.0384105216790265	0.965173861991602	390.67498368986	0	15.5474889254753						904	26	5	NaN	NaN	NaN	1.5855E-07	1	12462	166.66	137.35	1	613750			15165	1503	12749	13119	15165	15165		
NNLSFIETSALDSTNVEEAFK	21	Unmodified	_NNLSFIETSALDSTNVEEAFK_			0	0	0	Q15907	Q15907	Q15907	RAB11B	Ras-related protein Rab-11B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.06334	2328.11214	0.29773	0.00034687	0.6514	0.00075892	0.94912	0.0011058	1165.5659515067	17.619	0.079773	17.619	17.583	17.663	0	66	46	1.27913350869533	0.0296880360637206	1.27913350869533	515.360681886334	0	11.9612584657177						303	10	4	NaN	NaN	NaN	3.2704E-11	1	35881	105.79	101.48	1	51725			15166	1875	12750	13120	15166	15166		
NNMFEISDR	9	Unmodified	_NNMFEISDR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.253305	1124.49206	0.27795	0.00015656	3.0686	0.0017284	3.3465	0.001885	563.255172266914	8.8487	0.11542	8.8487	8.8044	8.9198	0	654	25	0.886123392477847	0.0162571004140306	0.886123392477847	359.276175919202	0	6.59139451443099						116	14	2	NaN	NaN	NaN	0.0073524	1	7378	56.378	51.07	1	24090			15167	3042	12751	13121	15167	15167		
NNPEPWNK	8	Unmodified	_NNPEPWNK_			0	0	0	O00483	O00483	O00483	NDUFA4	Cytochrome c oxidase subunit NDUFA4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.738148	997.461744	0.32642	0.00016312	-0.074379	-3.717E-05	0.25204	0.00012595	499.738001901945	4.2904	0.25713	4.2904	4.1928	4.4499	0	744	70	0.82502364452135	0.0469571892371637	0.82502364452135	335.018861302696	0	19.067991775359						776	30	3	NaN	NaN	NaN	0.022894	1	4228	42.835	33.442	1	196070			15168	84	12752	13122	15168	15168		
NNPPTLVGDFTK	12	Unmodified	_NNPPTLVGDFTK_			0	0	0	Q9P289	Q9P289	Q9P289	STK26	Serine/threonine-protein kinase 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.838059	1301.66157	1.755	0.0011439	3.2769	0.002136	5.0319	0.00328	651.839379367227	10.081	0.532	10.081	9.709	10.241	0	498	64	0.991429299781895	0.0423833273901605	0.991429299781895	401.308856635296	0	17.1558422361398						1051	61	4	NaN	NaN	NaN	0.013053	1	12401	40.533	15.712	1	326060			15169	3155	12753	13123	15169	15169		
NNQFNQDELALMEK	14	Unmodified	_NNQFNQDELALMEK_			0	0	0	O95379	O95379	O95379	TNFAIP8	Tumor necrosis factor alpha-induced protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.396144	1692.77773	1.8805	0.0015935	0.77259	0.00065469	2.6531	0.0022482	847.898219051716	11.562	0.16854	11.562	11.5	11.669	0	348	43	1.09197348738011	0.0280476801589677	1.09197348738011	440.932767652676	0	11.3254958858042						269	20	3	NaN	NaN	NaN	0.0031703	1	24275	54.199	47.452	1	59205			15170	430	12754	13124	15170	15170		
NNQFQALLQYADPVSAQHAK	20	Unmodified	_NNQFQALLQYADPVSAQHAK_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.06382	2242.11308	0.97051	0.001089	-1.1045	-0.0012394	-0.13404	-0.0001504	1122.56445874484	15.145	0.12417	15.145	15.083	15.207	0	60	79	1.28308947459206	0.0514769093526355	1.28308947459206	517.072195564025	0	20.744678424145						604	15	4	NaN	NaN	NaN	8.2746E-17	1	35118	120.21	108.53	1	120140			15171	856	12755	13125	15171	15171		
NNQFQALLQYADPVSAQHAK	20	Unmodified	_NNQFQALLQYADPVSAQHAK_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.378303	2242.11308	1.0386	0.00077728	0.94384	0.00070635	1.9825	0.0014836	748.71358005187	15.154	0.26602	15.154	15.065	15.331	-1.7764E-15	522	85	0.975277694896658	0.0565384843480868	0.975277694896658	589.539063196477	0	34.1765686547888						1366	31	6	NaN	NaN	NaN	4.5988E-38	1	35119	230.5	211.3	1	913620			15172	856	12755	13125	15172	15172		
NNQGTVNWSVDDIVK	15	Unmodified	_NNQGTVNWSVDDIVK_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.915558	1687.81656	3.0633	0.0025883	0.63209	0.00053406	3.6954	0.0031223	844.915913680877	12.822	0.21283	12.822	12.76	12.972	0	327	61	1.10599442759226	0.040057086970017	1.10599442759226	446.605004935717	0	16.1752130730899						891	25	6	NaN	NaN	NaN	7.0525E-33	1	24141	199.51	167.46	1	425440			15173	1207	12756	13126	15173	15173		
NNQQVPENTEELGQTK	16	Unmodified	_NNQQVPENTEELGQTK_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.937219	1827.85988	2.6485	0.0024232	-0.81902	-0.00074935	1.8295	0.0016739	914.937172867033	5.3278	0.11526	5.3278	5.2923	5.4076	0	348	52	1.09197348738011	0.034050864491993	1.09197348738011	440.66805789107	0	13.7412936290231						278	14	4	NaN	NaN	NaN	0.0038791	1	27915	55.604	53.302	1	49267			15174	3103	12757	13127	15174	15174		
NNSGEEFDCAFR	12	Unmodified	_NNSGEEFDCAFR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.291147	1444.56774	1.7484	0.0012646	-0.7777	-0.00056251	0.97069	0.00070209	723.29072452797	8.1479	0.18627	8.1479	8.1036	8.2898	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.36065319899	0	8.98574326988819						472	22	4	NaN	NaN	NaN	4.5505E-11	1	16803	175.07	174.62	1	171030			15175	1581	12758	13128	15175	15175		
NNSNDIVNAIMELTM	15	Unmodified	_NNSNDIVNAIMELTM_			0	0	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.89238	1677.77021	0.81789	0.00068694	-0.030186	-2.5353E-05	0.78771	0.00066159	839.892621049915	20.252	0.053186	20.252	20.244	20.297	0	378	37	1.07192009927972	0.0240806587960416	1.07192009927972	432.866763386211	0	9.72434124544776						109	7	4	NaN	NaN	NaN	9.773E-07	1	23838	143.22	130.64	1	65584			15176	46	12759	13129	15176	15176		
NNSNDIVNAIMELTM	15	2 Oxidation (M)	_NNSNDIVNAIM(Oxidation (M))ELTM(Oxidation (M))_	NNSNDIVNAIM(1)ELTM(1)	NNSNDIVNAIM(97)ELTM(97)	0	2	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.887294	1709.76004	1.3861	0.0011864	0.17982	0.0001539	1.5659	0.0013403	855.887465249908	19.72	0.15074	19.72	19.587	19.738	0	366	40	1.07994477139643	0.0260712032771278	1.07994477139643	436.040467160766	0	10.526556503165						226	18	2	NaN	NaN	NaN	9.8041E-05	1	24733	97.175	95.191	1	54151			15177	46	12759	13130	15177	15177	21;22	
NNVAFMSYFLQGK	13	Unmodified	_NNVAFMSYFLQGK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.874119	1517.73368	0.42214	0.00032077	1.3764	0.0010459	1.7986	0.0013667	759.875392467663	16.954	0.13305	16.954	16.91	17.043	0	390	52	1.06389100039157	0.0341260341638749	1.06389100039157	429.995310027641	0	13.7927989191643						474	16	4	NaN	NaN	NaN	1.0256E-07	1	19063	101.48	92.504	1	140210			15178	973	12760	13131	15178	15178		
NNVSLLQSCIDLFK	14	Unmodified	_NNVSLLQSCIDLFK_			0	0	0	Q9Y5X3	Q9Y5X3	Q9Y5X3	SNX5	Sorting nexin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.929622	1649.84469	1.2314	0.001017	-0.78541	-0.00064869	0.44595	0.00036832	825.929694345847	17.069	0.13298	17.069	17.016	17.149	0	336	31	1.09998710857178	0.0200285363602049	1.09998710857178	444.262475577962	0	8.08911947808269						192	16	2	NaN	NaN	NaN	0.042425	1	23047	38.1	27.615	1	69000			15179	3445	12761	13132	15179	15179		
NPAPPIDAVEQILPTLVR	18	Unmodified	_NPAPPIDAVEQILPTLVR_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.370197	1942.08876	0.13398	8.6869E-05	-0.56555	-0.00036669	-0.43157	-0.00027982	648.704111740761	19.924	0.070929	19.924	19.898	19.969	0	597	37	0.924688525662974	0.024324866464508	0.924688525662974	559.489760621	0	14.7179437590704						195	9	4	NaN	NaN	NaN	4.9403E-05	1	30560	80.815	76.508	1	62895			15180	1207	12762	13133	15180	15180		
NPAPPIDAVEQILPTLVR	18	Unmodified	_NPAPPIDAVEQILPTLVR_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.051657	1942.08876	1.8528	0.001801	-0.16894	-0.00016422	1.6838	0.0016368	972.051420533884	19.933	0.15073	19.933	19.836	19.986	0	213	100	1.18187287897418	0.0657000023512722	1.18187287897418	476.735813181793	0	26.5016184093886						965	18	5	NaN	NaN	NaN	2.0832E-10	1	30561	123.24	121.77	1	368140			15181	1207	12762	13133	15181	15181		
NPASPYNLAYK	11	Unmodified	_NPASPYNLAYK_			0	0	0	O75787	O75787	O75787	ATP6AP2	Renin receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.31422	1236.61389	1.6733	0.0010363	1.3035	0.0008073	2.9768	0.0018436	619.315789582622	7.4649	0.17733	7.4649	7.3674	7.5447	0	540	43	0.963152256458504	0.028308359885891	0.963152256458504	390.078222847778	0	11.4649315743978						424	21	5	NaN	NaN	NaN	2.0946E-05	1	10519	97.277	93.669	1	119350			15182	357	12763	13134	15182	15182		
NPATTNQTEFER	12	Unmodified	_NPATTNQTEFER_			0	0	0	P50750	P50750	P50750	CDK9	Cyclin-dependent kinase 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.328587	1406.64262	2.302	0.0016214	-3.2066	-0.0022585	-0.90461	-0.00063714	704.325896461121	4.1928	0.20393	4.1928	4.1219	4.3258	0	516	31	0.979317271586824	0.0201978857694813	0.979317271586824	396.095350255452	0	8.16925103885814						247	24	2	NaN	NaN	NaN	0.0063709	1	15663	55.754	52.652	1	63047			15183	1171	12764	13135	15183	15183		
NPAVLSAASFDGR	13	Unmodified	_NPAVLSAASFDGR_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.833308	1303.65206	2.2578	0.001474	1.2838	0.00083814	3.5417	0.0023121	652.833921290358	9.8332	0.12414	9.8332	9.7711	9.8952	0	465	40	1.01360860968299	0.0261938098951453	1.01360860968299	410.279985009259	0	10.6025105040067						315	15	3	NaN	NaN	NaN	4.0792E-05	1	12465	99.276	81.806	1	89124			15184	400	12765	13136	15184	15184		
NPDDITNEEYGEFYK	15	Unmodified	_NPDDITNEEYGEFYK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.394321	1832.77409	3.1281	0.0028697	1.1607	0.0010649	4.2888	0.0039346	917.395545404853	10.667	0.31034	10.667	10.587	10.897	0	315	181	1.11400032671325	0.120122074599271	1.11400032671325	449.547948080966	0	48.4745209318338						3392	36	6	NaN	NaN	NaN	3.3184E-56	1	28033	301.59	292.01	1	5208400			15185	567	12766	13137	15185	15185		
NPDDITQEEYGEFYK	15	Unmodified	_NPDDITQEEYGEFYK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.603856	1846.78974	1.0198	0.0006288	-0.065666	-4.049E-05	0.95411	0.00058831	616.603686712	10.906	0.15962	10.906	10.853	11.012	0	642	43	0.894250814548268	0.0284341478220305	0.894250814548268	541.271034479654	0	17.2105860635446						490	19	5	NaN	NaN	NaN	3.5737E-05	1	28394	110.44	99.468	1	173350			15186	579	12767	13138	15186	15186		
NPDDITQEEYGEFYK	15	Unmodified	_NPDDITQEEYGEFYK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.402146	1846.78974	3.456	0.0031948	0.17446	0.00016127	3.6305	0.003356	924.40223493823	10.906	0.6651	10.906	10.755	11.42	0	291	187	1.12999890578964	0.124091999259263	1.12999890578964	455.978085227923	0	50.0737053146111						5211	76	7	NaN	NaN	NaN	8.9125E-86	1	28396	326.64	322.4	1	9493200			15187	579	12767	13138	15187	15187		
NPDGTMNLMNWECAIPGK	18	Unmodified	_NPDGTMNLMNWECAIPGK_			0	0	0	P63279	P63279	P63279	UBE2I	SUMO-conjugating enzyme UBC9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.45535	2046.89615	0.98083	0.0010048	0.60634	0.00062117	1.5872	0.001626	1024.95816904255	16.315	0.12413	16.315	16.271	16.395	0	198	61	1.1918274123006	0.0397880929127559	1.1918274123006	480.576510991072	0	16.0436172835552						654	15	5	NaN	NaN	NaN	4.754E-05	1	32473	71.912	71.79	1	136590			15188	1437	12768	13139	15188	15188		
NPDQVYLVDYGLAYR	15	Unmodified	_NPDQVYLVDYGLAYR_			0	0	0	Q99986	Q99986	Q99986	VRK1	Serine/threonine-protein kinase VRK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.443951	1784.87335	2.1956	0.0019617	2.1442	0.0019157	4.3398	0.0038774	893.445113804829	14.551	0.1685	14.551	14.48	14.648	0	288	46	1.13199748998575	0.0299787708874888	1.13199748998575	456.902656053928	0	12.1001858792975						458	20	4	NaN	NaN	NaN	3.9974E-08	1	26829	100.07	91.697	1	112790			15189	2685	12769	13140	15189	15189		
NPDSITNQIALLEAR	15	Unmodified	_NPDSITNQIALLEAR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.941576	1653.8686	2.1013	0.0017398	-1.2872	-0.0010658	0.81406	0.00067399	827.940597924109	14.586	0.15961	14.586	14.498	14.657	0	375	52	1.07392668217569	0.0341119209023848	1.07392668217569	433.72841152057	0	13.7768336632931						461	19	4	NaN	NaN	NaN	5.2162E-09	1	23163	130.78	105.96	1	140520			15190	3042	12770	13141	15190	15190		
NPDSQYGELIEK	12	Unmodified	_NPDSQYGELIEK_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.835714	1391.65687	1.9381	0.0013505	0.94619	0.00065934	2.8843	0.0020099	696.836074892013	7.8374	0.31044	7.8374	7.66	7.9704	0	489	64	0.997481546940468	0.0423891882940376	0.997481546940468	403.484361117069	0	17.1465573569269						957	36	4	NaN	NaN	NaN	2.9655E-07	1	15190	127.03	110.38	1	395470			15191	902	12771	13142	15191	15191		
NPDTQWITK	9	Unmodified	_NPDTQWITK_			0	0	0	P61313	P61313	P61313	RPL15	60S ribosomal protein L15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.780013	1101.54547	0.9215	0.00050846	1.2974	0.00071589	2.2189	0.0012244	551.780878351265	6.9062	0.27493	6.9062	6.8264	7.1014	0	663	52	0.880024865079826	0.0345631296490378	0.880024865079826	356.893550696876	0	14.0170562822934						821	32	4	NaN	NaN	NaN	2.3071E-06	1	6757	170.69	98.651	1	603340			15192	1341	12772	13143	15192	15192		
NPEDLSAETMAK	12	Unmodified	_NPEDLSAETMAK_			0	0	0	Q9Y570	Q9Y570	Q9Y570	PPME1	Protein phosphatase methylesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.303192	1304.59183	1.6509	0.0010785	2.5427	0.0016611	4.1936	0.0027397	653.806826209056	6.25	0.15079	6.25	6.1791	6.3299	0	543	46	0.961130371139249	0.0303198952028392	0.961130371139249	389.035340276583	0	12.2725398151817						371	18	3	NaN	NaN	NaN	0.0046435	1	12488	71.896	48.843	1	126660			15193	3424	12773	13144	15193	15193		
NPEHFVVCNR	10	Unmodified	_NPEHFVVCNR_			0	0	0	Q2TAY7	Q2TAY7	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.301121	1270.58769	1.9948	0.0012693	-3.2247	-0.0020519	-1.2299	-0.00078259	636.300027562585	4.1839	0.10641	4.1839	4.1307	4.2371	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	380.132085033549	0	6.55943656793715						160	13	3	NaN	NaN	NaN	0.030838	1	11520	36.24	29.55	1	31511			15194	1926	12774	13145	15194	15194		
NPEILAIAPVLLDALTDPSR	20	Unmodified	_NPEILAIAPVLLDALTDPSR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.59389	2117.17322	0.16869	0.00017874	-2.151	-0.0022792	-1.9823	-0.0021004	1059.58976426393	20.199	0.035476	20.199	20.182	20.217	0	129	85	1.23753038177212	0.0555050694189332	1.23753038177212	498.893560314031	0	22.3761146439379						177	5	4	NaN	NaN	NaN	0.0096048	1	33580	58.794	56.553	1	44406			15195	2420	12775	13146	15195	15195		
NPEISHLLNNPDIMR	15	Unmodified	_NPEISHLLNNPDIMR_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.301677	1761.8832	0.2197	0.00012925	-1.2244	-0.00072034	-1.0047	-0.00059109	588.300848295146	12.121	0.15964	12.121	12.032	12.192	0	621	58	0.908462957275599	0.038570481256978	0.908462957275599	550.070628765788	0	23.3542696561358						517	19	4	NaN	NaN	NaN	9.4607E-05	1	26197	79.795	72.94	1	127490			15196	3216	12776	13147	15196	15196		
NPEISHMLNNPDIMR	15	Unmodified	_NPEISHMLNNPDIMR_			0	0	0	Q9UMX0	Q9UMX0	Q9UMX0	UBQLN1	Ubiquilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.287151	1779.83962	0.93755	0.00055717	0.45961	0.00027314	1.3972	0.00083031	594.287211617883	10.879	0.16849	10.879	10.817	10.986	0	627	109	0.90440375274676	0.0731976775722243	0.90440375274676	547.569700563597	0	44.3174083128739						1070	20	6	NaN	NaN	NaN	0.00042346	1	26669	80.815	70.794	1	340010			15197	3289	12777	13148	15197	15197		
NPEISHMLNNPDIMR	15	Unmodified	_NPEISHMLNNPDIMR_			0	0	0	Q9UMX0	Q9UMX0	Q9UMX0	UBQLN1	Ubiquilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.927088	1779.83962	2.5979	0.0023145	-0.80506	-0.00071725	1.7928	0.0015973	891.428024048062	10.879	0.079826	10.879	10.844	10.924	0	258	40	1.15196821829984	0.0259458875864387	1.15196821829984	464.97349195691	0	10.4726413119218						278	10	5	NaN	NaN	NaN	0.0025384	1	26670	51.829	48.744	1	68330			15198	3289	12777	13148	15198	15198		
NPELPNAAQAQK	12	Unmodified	_NPELPNAAQAQK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.833308	1279.65206	2.2679	0.0014534	-2.0277	-0.0012994	0.24028	0.00015398	640.832029628969	4.8489	0.24828	4.8489	4.7603	5.0085	0	537	43	0.965173861991602	0.0283044424712918	0.965173861991602	390.751811482986	0	11.4590879469646						448	29	3	NaN	NaN	NaN	3.7675E-07	1	11749	140.05	123.4	1	120700			15199	251	12778	13149	15199	15199		
NPELQNLLLDDFFK	14	Unmodified	_NPELQNLLLDDFFK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.44342	1704.87229	1.591	0.0013578	0.10268	8.7632E-05	1.6936	0.0014454	853.443399073997	19.898	0.10639	19.898	19.853	19.96	0	321	49	1.10999792833052	0.0320280154713002	1.10999792833052	448.185116839058	0	12.9319879702095						278	13	5	NaN	NaN	NaN	3.3515E-17	1	24634	144.51	130.06	1	115180			15200	1205	12779	13150	15200	15200		
NPELSTQLIDIIHTAAAR	18	Unmodified	_NPELSTQLIDIIHTAAAR_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.02509	1962.05344	-0.60631	-0.00039715	0.25396	0.00016635	-0.35235	-0.0002308	655.359615577347	17.344	0.079812	17.344	17.309	17.388	0	615	37	0.912521036363781	0.0243518545960122	0.912521036363781	552.087904630486	0	14.7332103502532						293	10	4	NaN	NaN	NaN	7.8528E-07	1	30966	116.36	102	1	72901			15201	3102	12780	13151	15201	15201		
NPELSTQLIDIIHTAAAR	18	Unmodified	_NPELSTQLIDIIHTAAAR_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.033996	1962.05344	-0.61804	-0.00060694	1.834	0.0018011	1.216	0.0011942	982.0356167525	17.344	0.079797	17.344	17.317	17.397	0	72	34	1.27517645957152	0.0217712237935928	1.27517645957152	514.334830697783	0	8.78129345935662						160	10	3	NaN	NaN	NaN	0.0098146	1	30967	30.172	19.687	1	28361			15202	3102	12780	13151	15202	15202		
NPENWAYYK	9	Unmodified	_NPENWAYYK_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.772188	1183.52982	1.1443	0.00067832	1.0421	0.00061773	2.1864	0.001296	592.772706704489	7.4826	0.17733	7.4826	7.4028	7.5801	0	600	31	0.922661313351899	0.0202763400038137	0.922661313351899	373.864304182124	0	8.21601560311092						329	21	4	NaN	NaN	NaN	0.0014723	1	8963	79.059	75.714	1	118140			15203	2785	12781	13152	15203	15203		
NPEPELLVR	9	Unmodified	_NPEPELLVR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.798206	1065.58186	0.83792	0.00044728	0.13421	7.1643E-05	0.97213	0.00051892	533.798145989623	8.547	0.27499	8.547	8.4672	8.7422	0	678	94	0.869855008346864	0.0630269344591623	0.869855008346864	352.916241556958	0	25.5711913051543						1252	32	4	NaN	NaN	NaN	0.00033801	1	5860	84.368	75.605	1	771090			15204	1771	12782	13153	15204	15204		
NPETVMQFLEK	11	Unmodified	_NPETVMQFLEK_			0	0	0	Q99797	Q99797	Q99797	MIPEP	Mitochondrial intermediate peptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.334295	1334.65404	1.0023	0.00066984	-0.063982	-4.2762E-05	0.93827	0.00062708	668.334239374686	14.294	0.16846	14.294	14.214	14.382	0	510	34	0.983355730988811	0.0222069226755673	0.983355730988811	397.937517463487	0	8.98654210428288						349	20	4	NaN	NaN	NaN	0.043652	1	13421	46.033	34.075	1	92882			15205	2673	12783	13154	15205	15205		
NPEVEFCGYTTTHPSESK	18	Unmodified	_NPEVEFCGYTTTHPSESK_			0	0	0	P0DPB6	P0DPB6	P0DPB6			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.95729	2081.90003	1.5322	0.0015965	-1.0805	-0.0011259	0.4517	0.00047065	1042.45792066771	7.3319	0.070931	7.3319	7.3053	7.3762	0	108	22	1.25141139212444	0.0138753046846334	1.25141139212444	504.545197691538	0	5.59425812262583						116	9	3	NaN	NaN	NaN	0.00014905	1	33055	66.509	66.145	1	20264			15206	620	12784	13155	15206	15206		
NPEVEFCGYTTTHPSESK	18	Unmodified	_NPEVEFCGYTTTHPSESK_			0	0	0	P0DPB6	P0DPB6	P0DPB6			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.973955	2081.90003	1.5633	0.0010865	0.88622	0.0006159	2.4495	0.0017024	695.30887624186	7.3408	0.10642	7.3408	7.2787	7.3851	0	558	64	0.951016745717027	0.0424596140677734	0.951016745717027	575.145860836095	0	25.678276848181						355	13	4	NaN	NaN	NaN	0.00016615	1	33057	65.212	62.497	1	91026			15207	620	12784	13155	15207	15207		
NPFGNAGLLLGEAGK	15	Unmodified	_NPFGNAGLLLGEAGK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.39099	1456.76743	1.6409	0.0011968	-2.2974	-0.0016757	-0.65653	-0.00047887	729.389854471776	14.506	0.23052	14.506	14.409	14.639	-1.7764E-15	438	55	1.03173026378327	0.0362208047125181	1.03173026378327	417.154526025667	0	14.6449834346361						859	27	4	NaN	NaN	NaN	9.2145E-05	1	17157	95.656	86.679	1	358480			15208	1145	12785	13156	15208	15208		
NPGFEIIHGLLDR	13	Unmodified	_NPGFEIIHGLLDR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.268414	1479.78341	-0.95755	-0.00047329	-1.4271	-0.00070539	-2.3847	-0.0011787	494.267694255725	15.482	0.21295	15.482	15.402	15.615	-1.7764E-15	762	49	0.812773098473386	0.0326817653854051	0.812773098473386	492.861700108781	0	19.8180654362966						732	25	4	NaN	NaN	NaN	0.0032889	1	17902	57.003	51.852	1	301290			15209	3036	12786	13157	15209	15209		
NPGFEIIHGLLDR	13	Unmodified	_NPGFEIIHGLLDR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.898983	1479.78341	1.6717	0.0012386	0.22127	0.00016394	1.893	0.0014025	740.899140735075	15.482	0.19521	15.482	15.393	15.588	0	372	40	1.07593298845566	0.0260819868444595	1.07593298845566	434.963129459187	0	10.5440605893709						624	23	5	NaN	NaN	NaN	8.0221E-08	1	17904	145.08	137.08	1	246630			15210	3036	12786	13157	15210	15210		
NPGLWLESVR	10	Unmodified	_NPGLWLESVR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.81693	1169.61931	0.81851	0.00047949	-1.4663	-0.00085901	-0.64783	-0.00037951	585.816289295338	12.68	0.23057	12.68	12.618	12.848	0	606	40	0.918606045818476	0.0263647247275708	0.918606045818476	372.272115362485	0	10.6845060403858						416	27	3	NaN	NaN	NaN	0.00051604	1	8601	105.36	92.531	1	130190			15211	396	12787	13158	15211	15211		
NPGNQAAYEHFETMK	15	Unmodified	_NPGNQAAYEHFETMK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.888486	1735.76242	2.6499	0.0023025	-1.4865	-0.0012916	1.1634	0.0010109	868.887086124146	6.7023	0.10643	6.7023	6.6668	6.7732	0	312	37	1.11600111266355	0.0240110882362814	1.11600111266355	450.544362771989	0	9.69359288814508						334	13	4	NaN	NaN	NaN	9.4394E-12	1	25485	149.58	146.08	1	100450			15212	753	12788	13159	15212	15212		
NPGNQAAYEHFETMK	15	Unmodified	_NPGNQAAYEHFETMK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.594749	1735.76242	0.33286	0.00019293	0.90895	0.00052682	1.2418	0.00071975	579.59511843387	6.7111	0.15073	6.7111	6.6668	6.8175	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	531.682637744765	0	13.5468858994572						334	18	5	NaN	NaN	NaN	0.0011097	1	25486	71.219	66.125	1	125480			15213	753	12788	13159	15213	15213		
NPGVGNGDDEAAELMQQVNVLK	22	Unmodified	_NPGVGNGDDEAAELMQQVNVLK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1149.55516	2297.09577	0.055747	6.4084E-05	0.16897	0.00019424	0.22472	0.00025832	1150.05681945911	16.262	0.088661	16.262	16.236	16.324	0	105	46	1.25339330680955	0.0297246551241719	1.25339330680955	505.030463859468	0	11.9769718602018						297	11	4	NaN	NaN	NaN	0.00069731	1	35612	58.794	58.429	1	50724			15214	1863	12789	13160	15214	15214		
NPGVGNGDDEAAELMQQVNVLK	22	Unmodified	_NPGVGNGDDEAAELMQQVNVLK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.705868	2297.09577	0.58139	0.00044575	1.0946	0.00083925	1.676	0.001285	767.04042826842	16.262	0.079802	16.262	16.227	16.307	0	438	22	1.03173026378327	0.0140868363075159	1.03173026378327	623.571828439805	0	8.51400272102035						128	10	3	NaN	NaN	NaN	0.011548	1	35613	26.929	25.081	1	28097			15215	1863	12789	13160	15215	15215		
NPGVWLNTTQPLCK	14	Unmodified	_NPGVWLNTTQPLCK_			0	0	0	O95983	O95983	O95983	MBD3	Methyl-CpG-binding domain protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.416682	1626.81881	2.1744	0.0017709	-3.4929	-0.0028447	-1.3185	-0.0010738	815.415087923176	11.456	0.20401	11.456	11.394	11.598	0	357	55	1.08596037261705	0.0360861602864868	1.08596037261705	438.649065515133	0	14.5761860992682						525	24	4	NaN	NaN	NaN	1.3102E-07	1	22384	96.946	74.942	1	110430			15216	464	12790	13161	15216	15216		
NPGYPQSEGLLGECMIR	17	Unmodified	_NPGYPQSEGLLGECMIR_			0	0	0	Q99961	Q99961	Q99961	SH3GL1	Endophilin-A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.95076	1919.88697	2.8722	0.00276	-2.351	-0.0022592	0.52118	0.00050083	961.451120569488	12.937	0.12415	12.937	12.884	13.008	0	252	58	1.15595906938629	0.0379104952093297	1.15595906938629	466.321140219336	0	15.2933315897422						628	15	4	NaN	NaN	NaN	8.3518E-05	1	30051	51.829	42.673	1	177230			15217	2684	12791	13162	15217	15217		
NPHVALYALEVMESVVK	17	Unmodified	_NPHVALYALEVMESVVK_			0	0	0	O14964	O14964	O14964	HGS	Hepatocyte growth factor-regulated tyrosine kinase substrate	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.673	1897.99717	-0.11557	-7.3233E-05	-0.029615	-1.8766E-05	-0.14518	-9.1999E-05	634.007295085122	19.41	0.070984	19.41	19.392	19.463	0	612	31	0.914549654013882	0.0202903977808542	0.914549654013882	553.446257952057	0	12.2788792001468						160	9	3	NaN	NaN	NaN	0.00010966	1	29569	49.097	40.722	1	30068			15218	129	12792	13163	15218	15218		
NPIHAIGLLIR	11	Unmodified	_NPIHAIGLLIR_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	406.255669	1215.74518	-2.4161	-0.00098154	1.0626	0.0004317	-1.3534	-0.00054983	406.256503328993	12.458	0.070939	12.458	12.405	12.476	0	870	16	0.739054571787983	0.0102651003834189	0.739054571787983	449.058349490856	0	6.23719710492287						54	9	2	NaN	NaN	NaN	0.028909	1	9910	48.157	26.114	1	10494			15219	1593	12793	13164	15219	15219		
NPILWNVADVVIK	13	Unmodified	_NPILWNVADVVIK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.929751	1479.84495	0.71961	0.00053318	0.68976	0.00051106	1.4094	0.0010442	740.930139881172	18.053	0.12414	18.053	18	18.124	0	423	91	1.04178812298108	0.0603347245237895	1.04178812298108	421.159357064304	0	24.3912684628989						665	15	4	NaN	NaN	NaN	3.4995E-05	1	17905	105.94	95.693	1	278660			15220	519	12794	13165	15220	15220		
NPLFCGAENTSLWELK	16	Unmodified	_NPLFCGAENTSLWELK_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.956368	1877.89818	1.6414	0.0015428	0.39317	0.00036956	2.0346	0.0019124	940.458491028486	16.147	0.16852	16.147	16.085	16.253	0	249	43	1.15795408347545	0.027932123570007	1.15795408347545	467.200872391454	0	11.2698013555819						545	20	5	NaN	NaN	NaN	2.1091E-06	1	29095	95.345	91.039	1	133720			15221	1540	12795	13166	15221	15221		
NPLLITEEDAFK	12	Unmodified	_NPLLITEEDAFK_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.36665	1388.71875	1.1314	0.00078677	-5.4222	-0.0037704	-4.2908	-0.0029836	695.363637029698	13.46	0.19511	13.46	13.38	13.575	0	480	46	1.00353128488872	0.0302361592844221	1.00353128488872	405.939973328507	0	12.2308749894488						438	23	3	NaN	NaN	NaN	0.0014504	1	15105	64.906	61.803	1	128320			15222	3209	12796	13167	15222	15222		
NPLPNIDHELQELLIDR	17	Unmodified	_NPLPNIDHELQELLIDR_			0	0	0	Q9ULX3	Q9ULX3	Q9ULX3	NOB1	RNA-binding protein NOB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.028611	2028.064	-0.86793	-0.00058762	0.20622	0.00013961	-0.66172	-0.000448	677.36287467958	18.55	0.11527	18.55	18.488	18.603	0	678	25	0.869855008346864	0.0162774195650359	0.869855008346864	526.154150804854	0	9.84581543631305						211	14	4	NaN	NaN	NaN	0.00059929	1	32123	59.77	57.223	1	42752			15223	3282	12797	13168	15223	15223		
NPLPPSVGVVDK	12	Unmodified	_NPLPPSVGVVDK_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.34552	1220.67649	1.5606	0.00095406	-1.3539	-0.00082772	0.20666	0.00012634	611.344514299945	8.0414	0.18636	8.0414	7.9527	8.139	0	558	37	0.951016745717027	0.0242811063417099	0.951016745717027	385.218845960888	0	9.8353050098554						479	22	4	NaN	NaN	NaN	0.0063281	1	10043	65.879	49.227	1	333780			15224	2296	12798	13169	15224	15224		
NPMVETLGTVLQLK	14	Unmodified	_NPMVETLGTVLQLK_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.931634	1541.84871	1.6879	0.0013029	-0.10028	-7.741E-05	1.5876	0.0012255	771.931538857679	17.725	0.23052	17.725	17.592	17.823	0	300	43	1.12400150285141	0.0279936646882595	1.12400150285141	454.226097562272	0	11.3126655396436						466	27	3	NaN	NaN	NaN	6.2994E-05	1	19794	80.623	74.595	1	116380			15225	1556	12799	13170	15225	15225		
NPNGPYPYTLK	11	Unmodified	_NPNGPYPYTLK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.322045	1262.62954	1.7341	0.0010965	0.9457	0.00059799	2.6798	0.0016945	632.32299050683	7.4205	0.19501	7.4205	7.3231	7.5181	-8.8818E-16	546	52	0.959108205975751	0.0343910976262953	0.959108205975751	388.352003959365	0	13.9252814211368						574	23	4	NaN	NaN	NaN	0.00073969	1	11297	99.34	93.077	1	153260			15226	704	12800	13171	15226	15226		
NPNTSEPQHLLVMK	14	Unmodified	_NPNTSEPQHLLVMK_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.41414	1606.81373	3.196	0.0025709	1.43	0.0011503	4.626	0.0037212	804.416201381669	7.4028	0.25714	7.4028	7.261	7.5181	0	327	67	1.10599442759226	0.0440688699107803	1.10599442759226	446.788307897194	0	17.8024909775024						827	30	4	NaN	NaN	NaN	9.0682E-08	1	21826	153.25	144.78	1	347660			15227	522	12801	13172	15227	15227		
NPPGFAFVEFEDPR	14	Unmodified	_NPPGFAFVEFEDPR_			0	0	0	Q16629;P84103	Q16629;P84103	Q16629	SRSF7;SRSF3	Serine/arginine-rich splicing factor 7;Serine/arginine-rich splicing factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.385905	1620.75726	2.1158	0.0017168	0.71575	0.00058075	2.8316	0.0022975	811.386504509604	15.677	0.33696	15.677	15.579	15.916	0	369	151	1.07793901817685	0.100198164664172	1.07793901817685	435.42275477628	0	40.4740529342663						3050	39	5	NaN	NaN	NaN	7.2319E-09	1	22213	159.44	141.71	1	2302500			15228	1894;1486	12802	13173	15228	15228		
NPPGFAFVEFEDPRDAADAVR	21	Unmodified	_NPPGFAFVEFEDPRDAADAVR_			0	0	1	P84103	P84103	P84103	SRSF3	Serine/arginine-rich splicing factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.037946	2319.09201	1.8993	0.0014702	-0.53202	-0.00041181	1.3673	0.0010583	774.371786251064	15.482	0.24842	15.482	15.367	15.615	0	453	82	1.02166545906632	0.0543950494149802	1.02166545906632	617.453533220776	0	32.8741812233646						1802	29	6	NaN	NaN	NaN	6.3805E-16	1	35801	153.26	129.83	1	971860			15229	1486	12803	13174	15229	15229		
NPPGFAFVEFEDPRDAEDAVR	21	Unmodified	_NPPGFAFVEFEDPRDAEDAVR_			0	0	1	Q16629	Q16629	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	793.373106	2377.09749	1.541	0.0012226	0.041996	3.3319E-05	1.583	0.0012559	793.707365984034	15.34	0.23951	15.34	15.242	15.482	0	441	130	1.02971785871157	0.0865455574281391	1.02971785871157	622.229679474656	0	52.2970578813188						1788	28	6	NaN	NaN	NaN	7.6662E-11	1	36243	116.06	111.68	1	819780			15230	1894	12804	13175	15230	15230		
NPPPNADPNMK	11	Unmodified	_NPPPNADPNMK_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.78223	1193.54991	1.2194	0.00072895	0.30193	0.00018049	1.5214	0.00090944	597.782561129721	2.8715	0.24827	2.8715	2.8006	3.0488	0	654	55	0.886123392477847	0.0365581956836764	0.886123392477847	359.024330430812	0	14.8120248697967						399	29	3	NaN	NaN	NaN	0.0047828	1	9249	43.168	29.895	1	75658			15231	2473	12805	13176	15231	15231		
NPQAVLDVLK	10	Unmodified	_NPQAVLDVLK_			0	0	0	Q13177;O75914	Q13177	Q13177	PAK2;PAK3	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.821681	1095.62881	-0.51884	-0.00028475	-0.426	-0.0002338	-0.94483	-0.00051854	548.821369668953	11.908	0.18623	11.908	11.82	12.006	0	633	37	0.900343422309015	0.024365365507813	0.900343422309015	365.158098690444	0	9.88201870783143						436	22	3	NaN	NaN	NaN	5.3495E-05	1	6606	117.3	86.738	1	176290			15232	1638	12806	13177	15232	15232		
NPQSYLYLVK	10	Unmodified	_NPQSYLYLVK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.834788	1223.65502	0.64192	0.00039339	1.5781	0.00096713	2.22	0.0013605	612.835693092954	11.553	0.13306	11.553	11.474	11.607	0	552	61	0.955063035883597	0.0404461214700302	0.955063035883597	386.847295047245	0	16.3826596758169						269	16	2	NaN	NaN	NaN	0.031895	1	10127	46.447	37.47	1	94557			15233	54	12807	13178	15233	15233		
NPSDSAVHSPFTK	13	Unmodified	_NPSDSAVHSPFTK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.893124	1385.65754	-1.7095	-0.0007913	2.339	0.0010827	0.62954	0.00029141	462.893959400962	5.3012	0.26603	5.3012	5.1947	5.4608	-8.8818E-16	792	34	0.792332785124922	0.022498430910932	0.792332785124922	480.768601455279	0	13.6515102833737						439	31	3	NaN	NaN	NaN	0.004276	1	14999	33.751	30.143	1	129090			15234	1729	12808	13179	15234	15234		
NPSDSAVHSPFTK	13	Unmodified	_NPSDSAVHSPFTK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.836048	1385.65754	1.7873	0.0012401	0.75623	0.0005247	2.5436	0.0017648	693.836495572848	5.3012	0.24829	5.3012	5.1947	5.443	0	477	40	1.0055473068722	0.0262046696285547	1.0055473068722	406.764311240399	0	10.6003211583321						797	29	4	NaN	NaN	NaN	3.9127E-05	1	15001	81.48	62.224	1	217590			15235	1729	12808	13179	15235	15235		
NPSIVGVLCTDSQGLNLGCR	20	Unmodified	_NPSIVGVLCTDSQGLNLGCR_			0	0	0	O43504	O43504	O43504	LAMTOR5	Ragulator complex protein LAMTOR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.53044	2159.04632	1.4452	0.0015616	-0.9873	-0.0010668	0.45794	0.00049482	1081.03059934122	15.579	0.079812	15.579	15.535	15.615	1.7764E-15	144	37	1.22760721615852	0.0238237664367487	1.22760721615852	494.830610928605	0	9.60301368821081						227	10	4	NaN	NaN	NaN	3.5684E-08	1	34159	85.742	83.195	1	41445			15236	207	12809	13180	15236	15236		
NPSSPLYTTLGVITK	15	Unmodified	_NPSSPLYTTLGVITK_			0	0	0	O95478	O95478	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.940513	1589.86647	1.2688	0.0010099	-4.2981	-0.0034211	-3.0293	-0.0024111	796.438778164195	14.852	0.17734	14.852	14.808	14.985	0	351	46	1.08996939197032	0.0300614391365961	1.08996939197032	440.354810585304	0	12.1450193321372						416	21	3	NaN	NaN	NaN	0.0020623	1	21281	68.108	61.361	1	119060			15237	438	12810	13181	15237	15237		
NPSTSLGPTLEPEEVVNR	18	Unmodified	_NPSTSLGPTLEPEEVVNR_			0	0	0	Q8NBQ5	Q8NBQ5	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.991994	1937.96943	2.5221	0.0024465	-5.1133	-0.0049599	-2.5912	-0.0025134	970.487494467507	11.305	0.10647	11.305	11.261	11.367	0	249	34	1.15795408347545	0.0219481752144277	1.15795408347545	467.094673302471	0	8.85343890372474						249	13	3	NaN	NaN	NaN	6.2828E-06	1	30467	71.912	65.057	1	52219			15238	2293	12811	13182	15238	15238		
NPSTVEAFDLAQSNSEHSR	19	Unmodified	_NPSTVEAFDLAQSNSEHSR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.990885	2087.95082	1.5471	0.0010783	0.54815	0.00038206	2.0953	0.0014604	697.325474985201	8.4938	0.16848	8.4938	8.4406	8.6091	0	531	43	0.969216233931596	0.0282966100811786	0.969216233931596	586.141112190289	0	17.1125966771287						614	20	5	NaN	NaN	NaN	5.0316E-35	1	33147	265.16	242.01	1	278110			15239	141	12812	13183	15239	15239		
NPTIVNFPITNVDLR	15	Unmodified	_NPTIVNFPITNVDLR_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.970136	1711.92572	2.1031	0.0018023	-0.94061	-0.00080608	1.1625	0.00099626	857.470988098738	16.076	0.20397	16.076	15.961	16.165	0	297	64	1.12600091227925	0.042004960473522	1.12600091227925	454.631557625924	0	16.9598269413805						804	24	4	NaN	NaN	NaN	1.6727E-12	1	24832	202.72	198.99	1	304160			15240	1949	12813	13184	15240	15240		
NPTLFIFAENDVVIPLK	17	Unmodified	_NPTLFIFAENDVVIPLK_			0	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.537852	1929.06115	1.66	0.0016028	-1.4547	-0.0014046	0.20532	0.00019824	966.037740237701	19.729	0.097524	19.729	19.703	19.8	0	222	64	1.17589687683038	0.0418320363191564	1.17589687683038	474.347985205068	0	16.8747298644958						386	12	4	NaN	NaN	NaN	2.3571E-07	1	30279	69.201	54.838	1	94665			15241	2504	12814	13185	15241	15241		
NPVDYIQGLLDLK	13	Unmodified	_NPVDYIQGLLDLK_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.408849	1486.80314	0.95848	0.0007135	-0.61087	-0.00045474	0.34761	0.00025876	744.408232833926	19.845	0.12414	19.845	19.756	19.88	0	438	40	1.03173026378327	0.0261576594975734	1.03173026378327	417.07522918342	0	10.5741899921082						265	15	3	NaN	NaN	NaN	0.00038926	1	18142	76.255	71.426	1	51705			15242	1695	12815	13186	15242	15242		
NPVEGFSAGLIDDNDLYR	18	Unmodified	_NPVEGFSAGLIDDNDLYR_			0	0	0	P62253	P62253	P62253	UBE2G1	Ubiquitin-conjugating enzyme E2 G1;Ubiquitin-conjugating enzyme E2 G1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.976344	1993.93813	1.5368	0.0015337	-1.9005	-0.0018967	-0.36372	-0.00036298	997.976055034734	15.375	0.14185	15.375	15.304	15.446	-1.7764E-15	222	40	1.17589687683038	0.0258995717918544	1.17589687683038	474.237738798852	0	10.4452648905191						499	17	4	NaN	NaN	NaN	1.2168E-06	1	31520	100.56	93.352	1	116490			15243	1373	12816	13187	15243	15243		
NPVLQQVLEGR	11	Unmodified	_NPVLQQVLEGR_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.854044	1251.69353	0.073542	4.61E-05	-0.43188	-0.00027073	-0.35834	-0.00022463	626.853902182088	11.979	0.18622	11.979	11.864	12.05	0	567	31	0.944945209309785	0.0202398580816178	0.944945209309785	382.653440597864	0	8.19608508074299						336	22	3	NaN	NaN	NaN	1.122E-08	1	10973	108.93	88.746	1	82349			15244	259	12817	13188	15244	15244		
NPVMELNEK	9	Unmodified	_NPVMELNEK_			0	0	0	Q12906;Q96SI9	Q12906;Q96SI9	Q12906	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.268424	1072.5223	1.5549	0.00083537	-0.32432	-0.00017425	1.2305	0.00066113	537.268484834082	6.0106	0.26607	6.0106	5.9396	6.2057	0	660	43	0.882057989648486	0.0284696767536509	0.882057989648486	357.837666639807	0	11.5497198813151						608	31	4	NaN	NaN	NaN	0.00012464	1	6014	122.44	105.98	1	287890			15245	1606;2622	12818	13189	15245	15245		
NPVSDHFPVGCMK	13	Unmodified	_NPVSDHFPVGCMK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.563845	1486.6697	-1.3584	-0.00067455	-0.28547	-0.00014175	-1.6439	-0.00081631	496.563755943094	8.2544	0.14199	8.2544	8.21	8.352	0	783	37	0.798467866007927	0.0245352049516095	0.798467866007927	484.16631996169	0	14.8773925622307						317	17	3	NaN	NaN	NaN	0.0017498	1	18120	47.334	46.078	1	79718			15246	2450	12819	13190	15246	15246		
NPVSDHFPVGCMK	13	Unmodified	_NPVSDHFPVGCMK_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.342129	1486.6697	1.7149	0.0012764	0.71685	0.00053358	2.4317	0.00181	744.34210199025	8.281	0.16857	8.281	8.21	8.3785	0	450	43	1.02367897599655	0.0281872971172881	1.02367897599655	413.820847048634	0	11.3946768885552						388	20	3	NaN	NaN	NaN	0.00042453	1	18122	83.214	72.964	1	136620			15247	2450	12819	13190	15247	15247		
NPVTIFSLATNEMWR	15	Unmodified	_NPVTIFSLATNEMWR_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.634656	1777.88214	-1.1505	-0.00068299	0.43491	0.00025818	-0.71562	-0.00042482	593.634515574511	19.197	0.062067	19.197	19.162	19.224	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	550.032015223549	0	9.82927501387826						118	8	3	NaN	NaN	NaN	0.00027123	1	26615	86.243	81.715	1	22454			15248	1546	12820	13191	15248	15248		
NPVTIFSLATNEMWR	15	Unmodified	_NPVTIFSLATNEMWR_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.948346	1777.88214	1.2527	0.0011148	-0.039604	-3.5245E-05	1.2131	0.0010796	890.449670497979	19.197	0.17733	19.197	19.109	19.286	0	309	67	1.11800162319566	0.0439900595080689	1.11800162319566	451.267258837009	0	17.7560328700963						849	21	5	NaN	NaN	NaN	5.3904E-24	1	26616	185.9	164.75	1	271940			15249	1546	12820	13191	15249	15249		
NPVTIFSLATNEMWR	15	Unmodified	_NPVTIFSLATNEMWR_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.948346	1777.88214	1.0655	0.00094822	0.15787	0.0001405	1.2233	0.0010887	889.9486147982	19.188	0.13302	19.188	19.144	19.277	0	207	73	1.18585551256002	0.0478244714372151	1.18585551256002	478.655625008275	0	19.3037448694341						596	16	5	NaN	NaN	NaN	9.16E-12	1	26617	176.97	170.95	1	226840			15250	1546	12820	13191	15250	15250		
NPVTIFSLATNEMWR	15	Oxidation (M)	_NPVTIFSLATNEM(Oxidation (M))WR_	NPVTIFSLATNEM(1)WR	NPVTIFSLATNEM(130)WR	0	1	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.945804	1793.87705	0.99506	0.00089351	1.8779	0.0016863	2.873	0.0025798	898.449019114324	17.176	0.17734	17.176	17.096	17.273	0	210	31	1.18386433251387	0.0199131701829285	1.18386433251387	477.818930174549	0	8.03714531460412						409	21	4	NaN	NaN	NaN	1.3013E-07	1	27074	130.65	107.7	1	98204			15251	1546	12820	13192	15251	15251	543	
NPVWYQALTHGLNEEQR	17	Unmodified	_NPVWYQALTHGLNEEQR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.672939	2053.99699	1.3316	0.00091307	0.13504	9.2592E-05	1.4667	0.0010057	686.00738094722	13.841	0.17732	13.841	13.762	13.939	0	552	46	0.955063035883597	0.0303366841243174	0.955063035883597	577.644871951624	0	18.3483491225431						697	21	4	NaN	NaN	NaN	6.0739E-05	1	32593	66.485	60.281	1	227230			15252	429	12821	13193	15252	15252		
NPVWYQALTHGLNEEQR	17	Unmodified	_NPVWYQALTHGLNEEQR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.00577	2053.99699	2.0251	0.0020818	-0.39727	-0.0004084	1.6279	0.0016734	1028.50690853827	13.832	0.18618	13.832	13.753	13.939	0	123	64	1.24149774378079	0.0416601778008276	1.24149774378079	500.593253062503	0	16.7981005466579						934	22	4	NaN	NaN	NaN	0.00021496	1	32594	53.363	51.889	1	451300			15253	429	12821	13193	15253	15253		
NPWSMDENLMHISYEAGILENPK	23	Unmodified	_NPWSMDENLMHISYEAGILENPK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.752601	2687.23597	0.90568	0.00081218	0.34109	0.00030587	1.2468	0.001118	897.086961338179	17.53	0.13299	17.53	17.504	17.637	0	453	46	1.02166545906632	0.0302111061455164	1.02166545906632	616.949739968888	0	18.2434806963938						547	16	5	NaN	NaN	NaN	1.3719E-09	1	37567	72.627	69.56	1	108040			15254	488	12822	13194	15254	15254		
NPWSMDENLMHISYEAGILENPK	23	Unmodified	_NPWSMDENLMHISYEAGILENPK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.752601	2687.23597	1.7595	0.0015778	1.0578	0.00094857	2.8173	0.0025264	897.087723878293	17.548	0.15962	17.548	17.45	17.61	0	279	127	1.13799159301878	0.0840852692337581	1.13799159301878	687.195215005662	0	50.7762930977538						1279	19	6	NaN	NaN	NaN	2.8278E-07	1	37568	82.747	80.562	1	438310			15255	488	12822	13194	15255	15255		
NPWSMDENLMHISYEAGILENPK	23	Oxidation (M)	_NPWSM(Oxidation (M))DENLMHISYEAGILENPK_	NPWSM(0.834)DENLM(0.166)HISYEAGILENPK	NPWSM(7)DENLM(-7)HISYEAGILENPK	0	1	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.084239	2703.23089	1.4053	0.0012677	2.4654	0.002224	3.8707	0.0034917	902.421669974889	15.845	0.11529	15.845	15.783	15.899	1.7764E-15	267	52	1.14597988355104	0.0339619226468326	1.14597988355104	691.997996924144	0	20.5078490300168						458	14	5	NaN	NaN	NaN	0.0044244	1	37611	52.481	50.031	2	103620			15256	488	12822	13195	15256	15256	78	
NPYYGGESASITPLEDLYK	19	Unmodified	_NPYYGGESASITPLEDLYK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.00731	2116.00007	1.4493	0.0015348	0.19965	0.00021143	1.6489	0.0017462	1059.5091898225	14.914	0.266	14.914	14.843	15.109	0	171	100	1.20972836110953	0.0655738689639465	1.20972836110953	487.68730801436	0	26.4353094952511						1735	31	5	NaN	NaN	NaN	1.8501E-19	1	33558	162	158.15	1	513410			15257	1161	12823	13196	15257	15257		
NPYYGGESSSITPLEELYK	19	Unmodified	_NPYYGGESSSITPLEELYK_			0	0	0	P31150	P31150	P31150	GDI1	Rab GDP dissociation inhibitor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.01259	2146.01063	0.56491	0.00060672	1.6504	0.0017726	2.2153	0.0023793	1074.5148561335	14.799	0.12416	14.799	14.755	14.879	0	120	85	1.2434810169581	0.0555812077234066	1.2434810169581	501.24856309046	0	22.4048458530899						590	15	3	NaN	NaN	NaN	0.00094772	1	33964	59.997	57.282	1	124720			15258	920	12824	13197	15258	15258		
NQAFIEMNTEEAANTMVNYYTSVTPVLR	28	Unmodified	_NQAFIEMNTEEAANTMVNYYTSVTPVLR_			0	0	0	P26599	P26599	P26599	PTBP1	Polypyrimidine tract-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1069.50928	3205.506	2.0867	0.0022318	-0.86531	-0.00092545	1.2214	0.0013063	1069.84243489964	19.747	0.08867	19.747	19.72	19.809	0	330	40	1.10399226369747	0.0260317206932301	1.10399226369747	666.109045869387	0	15.7065997683999						353	11	6	NaN	NaN	NaN	2.9829E-07	1	38465	67.057	66.952	1	98940			15259	856	12825	13198	15259	15259		
NQALNTDNYGHDLASVQALQR	21	Unmodified	_NQALNTDNYGHDLASVQALQR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	582.788635	2327.12543	-0.44545	-0.0002596	0.70877	0.00041306	0.26332	0.00015346	583.039712322469	10.658	0.053212	10.658	10.631	10.684	0	690	16	0.86171403876517	0.0101797454144904	0.86171403876517	694.364377734255	0	8.20278221340664						86	7	3	NaN	NaN	NaN	0.0010701	1	35872	49.097	46.549	1	19404			15260	1703	12826	13199	15260	15260		
NQALNTDNYGHDLASVQALQR	21	Unmodified	_NQALNTDNYGHDLASVQALQR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.715755	2327.12543	1.8842	0.0014635	0.65295	0.00050715	2.5371	0.0019706	777.050847470903	10.649	0.088661	10.649	10.613	10.702	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	629.601920706235	0	13.3688802378786						275	11	5	NaN	NaN	NaN	3.6476E-11	1	35876	103.17	82.205	1	92830			15261	1703	12826	13199	15261	15261		
NQAPPGLYTK	10	Unmodified	_NQAPPGLYTK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.790381	1087.56621	1.69	0.00092072	0.59562	0.00032449	2.2857	0.0012452	544.791062388	4.6627	0.45221	4.6627	4.5209	4.9731	0	648	76	0.890187667287968	0.0507858560076192	0.890187667287968	361.072400346147	0	20.5994439219443						1099	52	5	NaN	NaN	NaN	0.0010123	1	6406	83.358	58.507	1	985510			15262	488	12827	13200	15262	15262		
NQAVCHDYDIHFYPTFR	17	Unmodified	_NQAVCHDYDIHFYPTFR_			0	0	0	Q6ZRP7	Q6ZRP7	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	546.499541	2181.96906	0.11205	6.1237E-05	0.33289	0.00018192	0.44494	0.00024316	546.750628543842	11.048	0.097555	11.048	11.012	11.11	0	681	25	0.867820189810857	0.016279679599705	0.867820189810857	699.560315069227	0	13.1232459485391						212	12	5	NaN	NaN	NaN	0.016302	1	34470	23.432	22.161	1	46131			15263	2099	12828	13201	15263	15263		
NQDATVYVGGLDEK	14	Unmodified	_NQDATVYVGGLDEK_			0	0	0	Q15427	Q15427	Q15427	SF3B4	Splicing factor 3B subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.865002	1507.71545	1.7647	0.0013321	-0.96402	-0.0007277	0.80067	0.0006044	754.864677462007	8.281	0.28388	8.281	8.2454	8.5293	0	483	64	1.00151498427745	0.0423247851454723	1.00151498427745	404.808965711828	0	17.1075348523867						643	33	4	NaN	NaN	NaN	2.3474E-12	1	18721	167.59	134.49	1	165160			15264	1847	12829	13202	15264	15264		
NQDECVIALHDCNGDVNR	18	Unmodified	_NQDECVIALHDCNGDVNR_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.309343	2127.9062	0.96002	0.00068191	1.9331	0.0013731	2.8931	0.002055	710.310407070045	6.7821	0.053214	6.7821	6.7555	6.8087	0	618	40	0.910492137470517	0.0263756909350701	0.910492137470517	550.559000396996	0	15.9489285391688						141	7	3	NaN	NaN	NaN	0.0011224	1	33711	29.217	26.976	1	23415			15265	1729	12830	13203	15265	15265		
NQDEESQEAPELLK	14	Unmodified	_NQDEESQEAPELLK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.383756	1628.75296	2.5522	0.002081	-0.16746	-0.00013654	2.3847	0.0019444	815.38363327811	7.6156	0.24845	7.6156	7.5536	7.802	0	375	49	1.07392668217569	0.0321164047126832	1.07392668217569	433.783967542672	0	12.9725629232432						888	29	5	NaN	NaN	NaN	8.9555E-33	1	22429	210.4	190.84	1	316380			15266	2308	12831	13204	15266	15266		
NQDETEDTELQGMNEYLSSFK	21	Unmodified	_NQDETEDTELQGMNEYLSSFK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1239.53429	2477.05403	-0.34233	-0.00042433	-1.0987	-0.0013618	-1.441	-0.0017861	1240.03452461825	16.289	0.026609	16.289	16.271	16.298	0	66	7	1.27913350869533	0.00395650745466369	1.27913350869533	515.176744007517	0	1.59350108044146						14	4	2	NaN	NaN	NaN	0.0013625	1	36717	52.149	52.084	1	2418.2			15267	1776	12832	13205	15267	15267		
NQDHYAVLGLGHVR	14	Unmodified	_NQDHYAVLGLGHVR_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.942701	1577.80627	0.10315	5.4356E-05	1.3371	0.00070459	1.4403	0.00075895	527.27654330282	7.1368	0.15073	7.1368	7.0836	7.2343	0	693	25	0.85967808974117	0.0162909868365219	0.85967808974117	521.004882161589	0	9.87309526477929						247	18	4	NaN	NaN	NaN	2.8047E-06	1	20911	110.52	95.547	1	72067			15268	2649	12833	13206	15268	15268		
NQDLALSNLESIPGGYNALR	20	Unmodified	_NQDLALSNLESIPGGYNALR_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.05037	2144.0862	1.1041	0.0011847	-2.0459	-0.0021953	-0.94181	-0.0010106	1073.55016956996	15.659	0.20392	15.659	15.544	15.748	0	150	97	1.22363604450103	0.063503980803481	1.22363604450103	493.251891646919	0	25.5986727419425						950	24	4	NaN	NaN	NaN	8.0241E-11	1	33940	129.04	115.7	1	224660			15269	3216	12834	13207	15269	15269		
NQEQLAAELAEFTAK	15	Unmodified	_NQEQLAAELAEFTAK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.949298	1661.82606	-1.2156	-0.00067457	-0.63599	-0.00035294	-1.8515	-0.0010275	554.948784392457	15.242	0.079786	15.242	15.198	15.278	0	714	22	0.845418525735192	0.0142674906232585	0.845418525735192	512.1377662513	0	8.64296269288945						123	10	3	NaN	NaN	NaN	0.0021072	1	23389	66.953	59.396	1	28741			15270	962	12835	13208	15270	15270		
NQEQLAAELAEFTAK	15	Unmodified	_NQEQLAAELAEFTAK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.920309	1661.82606	2.5424	0.0021151	-1.7413	-0.0014486	0.80113	0.00066647	832.420304983553	15.234	0.11527	15.234	15.18	15.296	-1.7764E-15	333	112	1.10198982404297	0.0739782686267241	1.10198982404297	445.044611500043	0	29.8765279879232						626	14	5	NaN	NaN	NaN	1.7175E-08	1	23391	106.97	101.58	1	279110			15271	962	12835	13208	15271	15271		
NQETMGAFQEFPQVEACR	18	Unmodified	_NQETMGAFQEFPQVEACR_			0	0	0	Q9UJ83	Q9UJ83	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.47259	2140.93062	1.7858	0.0019135	0.65336	0.00070006	2.4392	0.0026135	1071.9757368556	12.99	0.070931	12.99	12.946	13.017	0	177	34	1.2057522832638	0.02187293336483	1.2057522832638	486.047488600938	0	8.81713804558086						166	9	3	NaN	NaN	NaN	0.055879	1	33893	37.886	37.411	1	27747			15272	3245	12836	13209	15272	15272		
NQGIEEALK	9	Unmodified	_NQGIEEALK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.266739	1000.51892	0.98899	0.00049575	7.7541	0.0038869	8.7431	0.0043826	501.773319974508	5.6736	0.28378	5.6736	5.6026	5.8864	0	693	52	0.85967808974117	0.0346111454231356	0.85967808974117	349.07650612088	0	14.0540254094268						493	33	4	NaN	NaN	NaN	0.013139	1	4298	49.96	29.302	1	208260			15273	753	12837	13210	15273	15273		
NQGLTVFETGQK	12	Unmodified	_NQGLTVFETGQK_			0	0	0	O60508	O60508	O60508	CDC40	Pre-mRNA-processing factor 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.340966	1320.66738	1.3112	0.00086716	-1.0048	-0.0006645	0.30645	0.00020267	661.340957937921	8.5914	0.27505	8.5914	8.414	8.6891	0	495	58	0.993446994398923	0.0383574228971185	0.993446994398923	402.064813572434	0	15.5238982786194						414	32	2	NaN	NaN	NaN	0.013723	1	13000	53.028	37.148	1	136330			15274	264	12838	13211	15274	15274		
NQHFEVPFIAFYR	13	Unmodified	_NQHFEVPFIAFYR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.615814	1666.82561	-1.3571	-0.00075538	-0.65576	-0.00036501	-2.0129	-0.0011204	556.950058616225	15.899	0.13301	15.899	15.828	15.961	0	708	22	0.849494101904619	0.0142635264886745	0.849494101904619	514.59392128868	0	8.64034724991666						223	16	3	NaN	NaN	NaN	0.0050256	1	23539	74.849	70.294	1	54067			15275	2107	12839	13212	15275	15275		
NQHFEVPFIAFYR	13	Unmodified	_NQHFEVPFIAFYR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.615814	1666.82561	-2.412	-0.0013426	0.8841	0.0004921	-1.5279	-0.00085046	556.950651055132	15.872	0.079811	15.872	15.845	15.925	0	765	16	0.810730346695089	0.0102137591879432	0.810730346695089	491.112183096283	0	6.18713927862501						75	10	2	NaN	NaN	NaN	0.033332	1	23541	21.15	20.098	1	15809			15276	2107	12839	13212	15276	15276		
NQIALWDQLLEGR	13	Unmodified	_NQIALWDQLLEGR_			0	0	0	Q9NY61	Q9NY61	Q9NY61	AATF	Protein AATF	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.414997	1554.81544	0.67639	0.00052651	1.1218	0.00087321	1.7982	0.0013997	778.415996573775	17.912	0.088641	17.912	17.867	17.956	0	378	43	1.07192009927972	0.0280979774914514	1.07192009927972	433.147055123581	0	11.3539770487827						239	11	3	NaN	NaN	NaN	7.6856E-08	1	20210	92.707	90.036	1	61836			15277	3110	12840	13213	15277	15277		
NQLCDLETK	9	Unmodified	_NQLCDLETK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.768788	1119.52302	1.1683	0.00065517	2.2438	0.0012583	3.4122	0.0019134	560.769868107205	5.3721	0.16846	5.3721	5.2923	5.4608	0	591	25	0.928742107665821	0.01621208273842	0.928742107665821	376.576054886504	0	6.57349560091711						296	20	3	NaN	NaN	NaN	0.070637	1	7245	36.211	30.463	1	61598			15278	849	12841	13214	15278	15278		
NQLDQEVEFLSTSIAQLK	18	Unmodified	_NQLDQEVEFLSTSIAQLK_			0	0	0	Q99471	Q99471	Q99471	PFDN5	Prefoldin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.0364	2062.05825	1.1165	0.0011523	-0.63098	-0.0006512	0.48552	0.00050107	1032.5392857372	19.951	0.079799	19.951	19.907	19.986	0	162	85	1.21569043230068	0.055596454182947	1.21569043230068	490.174434719935	0	22.4168585829739						523	10	5	NaN	NaN	NaN	3.0065E-07	1	32737	87.727	86.104	1	155950			15279	2642	12842	13215	15279	15279		
NQLDQEVEFLSTSIAQLK	18	Unmodified	_NQLDQEVEFLSTSIAQLK_			0	0	0	Q99471	Q99471	Q99471	PFDN5	Prefoldin subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.360026	2062.05825	0.3126	0.00021518	0.96321	0.00066304	1.2758	0.00087822	688.69463260778	19.951	0.070939	19.951	19.942	20.013	0	531	37	0.969216233931596	0.0242542357032265	0.969216233931596	586.18968748762	0	14.6691546730003						219	9	5	NaN	NaN	NaN	4.0904E-07	1	32738	156.02	143.34	1	114750			15280	2642	12842	13215	15280	15280		
NQLEESEFTCAAAVK	15	Unmodified	_NQLEESEFTCAAAVK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.895977	1695.7774	2.1099	0.0017911	-0.25896	-0.00021983	1.8509	0.0015713	849.398135012168	9.177	0.088681	9.177	9.1504	9.2391	0	285	31	1.13399579921816	0.0199817200584811	1.13399579921816	457.894567715216	0	8.06839061898899						228	11	4	NaN	NaN	NaN	3.3406E-05	1	24359	71.219	64.472	1	54560			15281	2418	12843	13216	15281	15281		
NQLELAAR	8	Unmodified	_NQLELAAR_			0	0	0	Q15070	Q15070	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.756341	913.498129	-0.22541	-0.00010318	-5.1568	-0.0023605	-5.3822	-0.0024637	457.754895520581	5.1681	0.24831	5.1681	5.0351	5.2835	0	750	37	0.820941264895493	0.0244942818992349	0.820941264895493	333.777660412233	0	9.95886606680091						274	29	2	NaN	NaN	NaN	0.032378	1	2565	56.014	23.887	1	72821			15282	1809	12844	13217	15282	15282		
NQLTAMSSVLAK	12	Unmodified	_NQLTAMSSVLAK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.842287	1261.67002	1.4682	0.00092765	-0.62338	-0.00039388	0.84479	0.00053377	631.842364897751	11.287	0.12419	11.287	11.234	11.358	0	516	58	0.979317271586824	0.0383521190755848	0.979317271586824	396.53811539032	0	15.5292645812479						421	15	4	NaN	NaN	NaN	0.0016384	1	11278	74.849	52.805	1	133790			15283	1728	12845	13218	15283	15283		
NQLTSLPSAICK	12	Unmodified	_NQLTSLPSAICK_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.353019	1330.69149	1.4475	0.00096453	-1.7918	-0.001194	-0.34433	-0.00022944	666.853704146777	9.9041	0.1773	9.9041	9.7977	9.975	0	510	46	0.983355730988811	0.0302779838228682	0.983355730988811	397.949668303263	0	12.2530567926685						372	21	3	NaN	NaN	NaN	0.00016617	1	13321	76.85	67.873	1	84636			15284	1621	12846	13219	15284	15284		
NQLTSNPENTVFDAK	15	Unmodified	_NQLTSNPENTVFDAK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.407566	1676.80058	3.309	0.0027776	0.076705	6.4386E-05	3.3857	0.002842	839.407864726244	9.106	0.49662	9.106	9.0262	9.5228	0	348	127	1.09197348738011	0.0841663848226482	1.09197348738011	440.966885642261	0	33.988543696292						2355	57	6	NaN	NaN	NaN	5.6568E-17	1	23810	183	140.55	1	4534400			15285	638	12847	13220	15285	15285		
NQMLIEEEVQK	11	Unmodified	_NQMLIEEEVQK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.842484	1359.67042	1.7661	0.0012025	-2.146	-0.0014611	-0.37982	-0.0002586	680.841467373924	8.2544	0.2218	8.2544	8.1567	8.3785	0	507	43	0.985374541851584	0.0282653130088721	0.985374541851584	398.679287398097	0	11.4360523535411						657	26	5	NaN	NaN	NaN	0.00023982	1	14184	74.424	66.867	1	254130			15286	3434	12848	13221	15286	15286		
NQMLIEEEVQK	11	Oxidation (M)	_NQM(Oxidation (M))LIEEEVQK_	NQM(1)LIEEEVQK	NQM(52)LIEEEVQK	0	1	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.839942	1375.66533	1.2464	0.00085856	-0.082392	-5.6755E-05	1.164	0.0008018	688.84020398362	6.321	0.15076	6.321	6.2855	6.4363	0	501	34	0.98941132619024	0.0221977126906285	0.98941132619024	400.26570258144	0	8.98007009888119						199	18	3	NaN	NaN	NaN	0.0025649	1	14666	51.872	45.182	1	53919			15287	3434	12848	13222	15287	15287	650	
NQNSWGTGEDVK	12	Unmodified	_NQNSWGTGEDVK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.802205	1333.58986	2.4767	0.0016539	0.39175	0.00026161	2.8684	0.0019155	667.802578695332	4.4854	0.25713	4.4854	4.4233	4.6805	0	552	52	0.955063035883597	0.0343863373068095	0.955063035883597	386.491386388959	0	13.9153361393069						670	30	4	NaN	NaN	NaN	0.0022193	1	13386	61.577	58.232	1	227400			15288	784	12849	13223	15288	15288		
NQSETLNWLSNAIK	14	Unmodified	_NQSETLNWLSNAIK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.415194	1616.81583	1.5776	0.0012769	-2.9613	-0.0023969	-1.3836	-0.0011199	809.412456196131	15.313	0.10642	15.313	15.278	15.384	1.7764E-15	369	34	1.07793901817685	0.0220632885593353	1.07793901817685	435.43176343652	0	8.91243055738795						160	13	2	NaN	NaN	NaN	0.061262	1	22106	32.051	22.536	1	40940			15289	1713	12850	13224	15289	15289		
NQSFCPTVNLDK	12	Unmodified	_NQSFCPTVNLDK_			0	0	0	P46776	P46776	P46776	RPL27A	60S ribosomal protein L27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.837733	1421.66091	2.1464	0.0015279	1.2263	0.00087289	3.3727	0.0024008	711.839358041169	8.6534	0.21301	8.6534	8.5736	8.7866	0	489	52	0.997481546940468	0.0342913380961678	0.997481546940468	403.400573801958	0	13.8680715516601						1018	25	6	NaN	NaN	NaN	1.2339E-16	1	16134	203.52	183.28	1	1390400			15290	1085	12851	13225	15290	15290		
NQVALNPQNTVFDAK	15	Unmodified	_NQVALNPQNTVFDAK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.928468	1657.84238	3.4577	0.0028696	-0.13869	-0.0001151	3.319	0.0027545	829.928790399012	10.294	0.4434	10.294	10.126	10.569	0	351	151	1.08996939197032	0.100322526854866	1.08996939197032	440.198834759419	0	40.5166050964071						3203	51	6	NaN	NaN	NaN	1.623E-33	1	23264	260.83	236.01	1	4303500			15291	618	12852	13226	15291	15291		
NQVAMNPTNTVFDAK	15	Unmodified	_NQVAMNPTNTVFDAK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.401229	1648.78791	3.5682	0.0029452	0.75576	0.00062381	4.3239	0.003569	825.402364385689	9.7534	0.532	9.7534	9.6292	10.161	0	366	145	1.07994477139643	0.0963228823698965	1.07994477139643	436.170104737181	0	38.9030650498356						3067	61	4	NaN	NaN	NaN	7.4262E-12	1	22993	154.94	127.35	1	5611300			15292	640	12853	13227	15292	15292		
NQVAMNPTNTVFDAK	15	Oxidation (M)	_NQVAM(Oxidation (M))NPTNTVFDAK_	NQVAM(1)NPTNTVFDAK	NQVAM(210)NPTNTVFDAK	0	1	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.398686	1664.78282	3.4915	0.0029098	-1.2447	-0.0010373	2.2468	0.0018725	833.397678564316	7.6245	0.45224	7.6245	7.527	7.9793	0	357	82	1.08596037261705	0.0541628493019599	1.08596037261705	438.564587218403	0	21.8736412908348						2239	52	6	NaN	NaN	NaN	2.3625E-32	1	23475	207.12	199.56	1	1721000			15293	640	12853	13228	15293	15293	190	
NQVGDENWR	9	Unmodified	_NQVGDENWR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.254694	1116.49483	1.3586	0.0007598	1.3583	0.00075961	2.7168	0.0015194	559.255404998655	4.4322	0.23054	4.4322	4.3524	4.5829	0	699	67	0.85560534332665	0.0447753579488978	0.85560534332665	346.932818036446	0	18.1556148906274						525	27	3	NaN	NaN	NaN	0.0016636	1	7166	74.486	67.724	1	161120			15294	2448	12854	13229	15294	15294		
NQVLPLSDVDTTSATDIQR	19	Unmodified	_NQVLPLSDVDTTSATDIQR_			0	0	0	Q9NYY8	Q9NYY8	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.02656	2072.03858	1.4405	0.0014939	-0.96057	-0.00099614	0.47997	0.00049774	1037.52844578605	12.298	0.1064	12.298	12.281	12.387	0	177	31	1.2057522832638	0.0198694832228234	1.2057522832638	486.151645296255	0	8.01124915460639						124	13	2	NaN	NaN	NaN	3.7345E-05	1	32897	53.363	51.889	1	44264			15295	3123	12855	13230	15295	15295		
NQWIDNVEK	9	Unmodified	_NQWIDNVEK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.28292	1144.55129	0.87036	0.00049896	5.4656	0.0031333	6.336	0.0036323	573.285304306287	7.5181	0.25714	7.5181	7.4028	7.66	0	615	31	0.912521036363781	0.0202819613609688	0.912521036363781	369.900477494956	0	8.22151697658597						440	30	4	NaN	NaN	NaN	0.010551	1	7911	45.489	23.103	1	232660			15296	753	12856	13231	15296	15296		
NQYDNDVTVWSPQGR	15	Unmodified	_NQYDNDVTVWSPQGR_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.908264	1777.80198	3.1205	0.002777	-2.2724	-0.0020222	0.84812	0.00075475	890.40671658601	9.8686	0.17731	9.8686	9.78	9.9573	0	366	67	1.07994477139643	0.0441174739341266	1.07994477139643	435.90625010085	0	17.8074686186778						643	21	2	NaN	NaN	NaN	6.2343E-12	1	26612	183	160.86	1	347890			15297	841	12857	13232	15297	15297		
NQYVTLHDMILK	12	Unmodified	_NQYVTLHDMILK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.262271	1473.76499	-0.56238	-0.00027684	-0.45352	-0.00022325	-1.0159	-0.00050009	492.262265474863	11.172	0.26605	11.172	11.083	11.35	0	750	58	0.820941264895493	0.038785319725911	0.820941264895493	497.833640727131	0	23.5201198326583						888	31	5	NaN	NaN	NaN	0.04622	1	17707	28.328	21.188	1	513130			15298	1340	12858	13233	15298	15298		
NQYVTLHDMILK	12	Unmodified	_NQYVTLHDMILK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.889769	1473.76499	1.5913	0.0011742	0.90313	0.00066641	2.4945	0.0018406	737.890469422606	11.172	0.14187	11.172	11.11	11.252	0	405	46	1.05384839605172	0.0301444498017385	1.05384839605172	426.051194860565	0	12.1868372192453						332	17	3	NaN	NaN	NaN	0.032882	1	17710	34.193	20.394	1	134690			15299	1340	12858	13233	15299	15299		
NRPLSDEELDAMFPEGYK	18	Unmodified	_NRPLSDEELDAMFPEGYK_			0	0	1	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.32985	2109.96772	0.82077	0.00057809	0.16389	0.00011543	0.98465	0.00069352	704.664211779227	13.088	0.1862	13.088	12.972	13.159	0	540	40	0.963152256458504	0.0262881524128359	0.963152256458504	582.433756064472	0	15.8968711822387						630	22	4	NaN	NaN	NaN	7.4795E-05	1	33466	73.502	71.792	1	157100			15300	343	12859	13234	15300	15300		
NSADGLNMFDGTDSCYFHSGPR	22	Unmodified	_NSADGLNMFDGTDSCYFHSGPR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.670829	2446.99066	2.1052	0.0017192	-0.69381	-0.00056662	1.4114	0.0011526	817.004656024412	12.76	0.097569	12.76	12.715	12.813	0	426	34	1.03977710643793	0.0221242386339204	1.03977710643793	628.203940834349	0	13.3668396925972						399	12	5	NaN	NaN	NaN	1.5645E-11	1	36559	127.25	127.17	1	139720			15301	1543	12860	13235	15301	15301		
NSAVETVEQELLFVGSETGK	20	Unmodified	_NSAVETVEQELLFVGSETGK_			0	0	0	Q9Y2R4	Q9Y2R4	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.0366	2136.05864	0.39445	0.00042168	-1.3395	-0.001432	-0.94509	-0.0010103	1069.53732435077	19.259	0.070949	19.259	19.233	19.304	0	177	49	1.2057522832638	0.0318086322004236	1.2057522832638	486.05464052557	0	12.8224789655275						221	9	4	NaN	NaN	NaN	1.9842E-07	1	33829	56.943	54.702	1	38517			15302	3349	12861	13236	15302	15302		
NSCIVCNMGHSNTEIDVTSLR	21	Unmodified	_NSCIVCNMGHSNTEIDVTSLR_			0	0	0	O43865	O43865	O43865	AHCYL1	Putative adenosylhomocysteinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.031481	2406.07261	1.7307	0.0013898	0.39255	0.00031523	2.1232	0.001705	803.365745688266	10.676	0.053221	10.676	10.649	10.702	0	420	22	1.04379886199097	0.0140732315426386	1.04379886199097	630.69430867396	0	8.50346495076928						131	7	4	NaN	NaN	NaN	0.00079374	1	36374	21.823	21.734	1	25955			15303	242	12862	13237	15303	15303		
NSDVLQSPLDSAARDEL	17	Unmodified	_NSDVLQSPLDSAARDEL_			0	0	1	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.447419	1828.88029	2.0508	0.0018774	0.21995	0.00020135	2.2708	0.0020788	915.447590211513	13.451	0.26605	13.451	13.345	13.611	0	285	40	1.13399579921816	0.0259815997142345	1.13399579921816	457.62431845217	0	10.4848817515208						428	31	2	NaN	NaN	NaN	1.2156E-05	1	27935	117.03	112.22	1	227300			15304	2289	12863	13238	15304	15304		
NSEEFAAAMSK	11	Unmodified	_NSEEFAAAMSK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.766245	1183.51794	0.78588	0.00046584	1.6643	0.00098654	2.4502	0.0014524	592.767462041865	6.1879	0.088665	6.1879	6.1347	6.2234	0	621	22	0.908462957275599	0.0142042621835186	0.908462957275599	368.111140396892	0	5.75559752766588						90	11	2	NaN	NaN	NaN	0.069543	1	8961	19.557	16.212	1	19479		+	15305	22	12864	13239	15305	15305		
NSEPAGLETPEAK	13	Unmodified	_NSEPAGLETPEAK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.827889	1341.64122	2.5877	0.0017385	-1.4036	-0.00094295	1.1841	0.00079551	671.826885200528	5.0706	0.32812	5.0706	4.9553	5.2835	0	561	73	0.948993180460448	0.0485286390232953	0.948993180460448	384.011428829783	0	19.6371822202753						1042	38	3	NaN	NaN	NaN	0.0050714	1	13658	68.548	63.72	1	431720			15306	565	12865	13240	15306	15306		
NSEPEEVIPSR	11	Unmodified	_NSEPEEVIPSR_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.809499	1255.60444	1.4429	0.00090731	1.3415	0.00084356	2.7844	0.0017509	628.810407453071	5.8509	0.26606	5.8509	5.7357	6.0017	0	603	76	0.920633820089869	0.0506733234080127	0.920633820089869	372.79592127903	0	20.519350768926						711	31	3	NaN	NaN	NaN	0.0071948	1	11081	51.531	40.175	1	222570			15307	1251	12866	13241	15307	15307		
NSEQIVEVGEELINEYASK	19	Unmodified	_NSEQIVEVGEELINEYASK_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.686579	2150.03791	0.30449	0.00021853	0.94037	0.00067489	1.2449	0.00089342	718.356979366923	19.57	0.079787	19.57	19.525	19.605	0	513	28	0.981336640919867	0.0181718123582917	0.981336640919867	593.357887679887	0	10.9874509384712						160	10	4	NaN	NaN	NaN	0.0033073	1	34014	59.171	57.901	1	35810			15308	1788	12867	13242	15308	15308		
NSEQIVEVGEELINEYASK	19	Unmodified	_NSEQIVEVGEELINEYASK_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.02623	2150.03791	0.98334	0.0010581	1.3984	0.0015047	2.3817	0.0025628	1076.52868116309	19.561	0.10642	19.561	19.534	19.641	0	153	49	1.22165005014568	0.0317868179326015	1.22165005014568	492.442545342144	0	12.8131468821132						249	13	3	NaN	NaN	NaN	3.6316E-06	1	34015	59.997	54.381	1	46871			15309	1788	12867	13242	15309	15309		
NSGELEATSAFLASGQR	17	Unmodified	_NSGELEATSAFLASGQR_			0	0	0	Q9NYB0	Q9NYB0	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.423747	1736.83294	1.5345	0.0013341	0.80162	0.00069695	2.3361	0.0020311	869.42462382989	11.518	0.088666	11.518	11.474	11.562	0	180	31	1.203763835057	0.0198885785601712	1.203763835057	485.972948800529	0	8.02924202310805						153	11	3	NaN	NaN	NaN	4.8702E-10	1	25513	128.68	99.364	1	27987			15310	3112	12868	13243	15310	15310		
NSGPLGTEMNTGFSSEVK	18	Unmodified	_NSGPLGTEMNTGFSSEVK_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.930548	1853.84654	2.4637	0.0022862	-1.0608	-0.00098435	1.4029	0.0013018	928.431377609952	10.862	0.19511	10.862	10.782	10.977	0	243	46	1.16194328902838	0.0299211058430284	1.16194328902838	468.855007694567	0	12.0734466498737						544	23	5	NaN	NaN	NaN	8.0198E-05	1	28568	62.711	54.336	1	163040			15311	3318	12869	13244	15311	15311		
NSGPLGTEMNTGFSSEVK	18	Oxidation (M)	_NSGPLGTEM(Oxidation (M))NTGFSSEVK_	NSGPLGTEM(1)NTGFSSEVK	NSGPLGTEM(98)NTGFSSEVK	0	1	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.928005	1869.84146	2.2229	0.0020805	-0.29043	-0.00027183	1.9325	0.0018087	936.429609799019	8.3697	0.10645	8.3697	8.3342	8.4406	0	270	25	1.14398322290989	0.0159765819712272	1.14398322290989	461.578622165314	0	6.44629094684819						164	13	3	NaN	NaN	NaN	0.00045853	1	28922	97.949	97.211	1	29354			15312	3318	12869	13245	15312	15312	642	
NSGQNLEEDMGQSEQK	16	Unmodified	_NSGQNLEEDMGQSEQK_			0	0	0	Q9HAV7	Q9HAV7	Q9HAV7	GRPEL1	GrpE protein homolog 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.383962	1792.75337	2.8459	0.0025539	-1.5579	-0.0013981	1.288	0.0011558	897.382852528822	5.2479	0.19508	5.2479	5.2036	5.3987	8.8818E-16	333	79	1.10198982404297	0.0521101122719825	1.10198982404297	444.775748291317	0	21.0322397481702						692	23	5	NaN	NaN	NaN	1.6134E-17	1	27038	176.58	159.82	1	199980			15313	2948	12870	13246	15313	15313		
NSHLINVLMWELEK	14	Unmodified	_NSHLINVLMWELEK_			0	0	0	O15372	O15372	O15372	EIF3H	Eukaryotic translation initiation factor 3 subunit H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.971269	1724.89198	-1.3609	-0.00078382	-0.092851	-5.3479E-05	-1.4537	-0.0008373	575.971098919069	17.167	0.10641	17.167	17.122	17.229	0	696	49	0.857641857947968	0.0326000897704161	0.857641857947968	519.385497673201	0	19.7425227006888						360	13	4	NaN	NaN	NaN	9.2346E-05	1	25193	77.157	76.105	1	79639			15314	169	12871	13247	15314	15314		
NSILAQVLDQSAR	13	Unmodified	_NSILAQVLDQSAR_			0	0	0	O14737	O14737	O14737	PDCD5	Programmed cell death protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.886072	1413.75759	1.1434	0.00080939	0.87044	0.00061617	2.0138	0.0014256	707.886594510685	14.879	0.1685	14.879	14.834	15.003	0	414	88	1.04781950764076	0.0583436935193666	1.04781950764076	423.781030855448	0	23.5965740313629						979	20	4	NaN	NaN	NaN	2.5605E-07	1	15894	124.06	101.01	1	350900			15315	114	12872	13248	15315	15315		
NSIVNSQPPEK	11	Unmodified	_NSIVNSQPPEK_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.814584	1211.61462	1.89	0.0011469	-1.2312	-0.0007471	0.65884	0.00039979	606.813814359907	3.7849	0.088681	3.7849	3.7406	3.8292	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	368.012777388135	0	6.57652408850959						112	11	2	NaN	NaN	NaN	0.010978	1	9782	37.591	33.052	1	25454			15316	3235	12873	13249	15316	15316		
NSLDCEIVSAK	11	Unmodified	_NSLDCEIVSAK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.300452	1234.58635	1.5723	0.00097215	1.691	0.0010455	3.2633	0.0020177	618.301726813857	7.0126	0.15082	7.0126	6.9505	7.1014	0	546	79	0.959108205975751	0.0526382434523011	0.959108205975751	388.447416914947	0	21.3189602305451						741	18	5	NaN	NaN	NaN	3.8091E-05	1	10452	108.4	81.454	1	386720			15317	1516	12874	13250	15317	15317		
NSLEILLGSIGR	12	Unmodified	_NSLEILLGSIGR_			0	0	0	Q9UBI1	Q9UBI1	Q9UBI1	COMMD3	COMM domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.369527	1270.7245	0.30535	0.00019432	-1.1548	-0.00073489	-0.84946	-0.00054057	636.368765330866	17.575	0.11528	17.575	17.504	17.619	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	401.411463288667	0	6.53587138273281						165	14	3	NaN	NaN	NaN	8.7892E-08	1	11532	123.42	91.279	1	37222			15318	3174	12875	13251	15318	15318		
NSLESYAFNMK	11	Unmodified	_NSLESYAFNMK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.302995	1302.59144	1.7659	0.0011519	1.3633	0.00088929	3.1292	0.0020412	652.304115085415	11.172	0.37247	11.172	11.083	11.456	0	510	76	0.983355730988811	0.0504842709886018	0.983355730988811	398.037876861831	0	20.4347739134182						1634	43	6	NaN	NaN	NaN	8.5321E-17	1	12419	195.3	183.94	1	2263500			15319	640	12876	13252	15319	15319		
NSLESYAFNMK	11	Oxidation (M)	_NSLESYAFNM(Oxidation (M))K_	NSLESYAFNM(1)K	NSLESYAFNM(200)K	0	1	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.300452	1318.58635	1.5638	0.0010326	1.1288	0.00074532	2.6926	0.0017779	660.301406011309	8.6091	0.26624	8.6091	8.547	8.8133	0	522	43	0.975277694896658	0.028284867590345	0.975277694896658	394.717831808445	0	11.4475514683363						664	31	5	NaN	NaN	NaN	3.3772E-11	1	12922	196.32	180.44	1	425100			15320	640	12876	13253	15320	15320	191	
NSLFGSVETWPWQVLSK	17	Unmodified	_NSLFGSVETWPWQVLSK_			0	0	0	Q9NRV9	Q9NRV9	Q9NRV9	HEBP1	Heme-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.507083	1976.99961	1.064	0.0010528	0.67035	0.00066332	1.7343	0.0017161	990.010007541629	19.96	0.070939	19.96	19.942	20.013	0	192	49	1.1958073123591	0.0318392099207156	1.1958073123591	482.296148942758	0	12.8414738490325						149	9	4	NaN	NaN	NaN	0.00021379	1	31237	61.067	57.982	1	36499			15321	3026	12877	13254	15321	15321		
NSLISSLEEEVSILNR	16	Unmodified	_NSLISSLEEEVSILNR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.654662	1801.94216	-1.1878	-0.00071462	-0.91031	-0.00054769	-2.0981	-0.0012623	601.654070440096	19.889	0.017759	19.889	19.88	19.898	0	666	19	0.877991458330206	0.0122012876869253	0.877991458330206	531.528076722856	0	7.38654905607814						37	3	3	NaN	NaN	NaN	0.009642	1	27264	52.863	51.684	1	6349.2			15322	1782	12878	13255	15322	15322		
NSLISSLEEEVSILNR	16	Unmodified	_NSLISSLEEEVSILNR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.978355	1801.94216	1.3205	0.001191	-0.86959	-0.00078435	0.45089	0.00040669	902.478940077938	19.889	0.035476	19.889	19.871	19.907	0	297	64	1.12600091227925	0.0419760654050894	1.12600091227925	454.449108133979	0	16.9413588197747						124	5	2	NaN	NaN	NaN	0.00018434	1	27265	41.87	39.733	1	39825			15323	1782	12878	13255	15323	15323		
NSNILEDLETLR	12	Unmodified	_NSNILEDLETLR_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.870088	1415.72562	0.25616	0.00018158	-1.6096	-0.001141	-1.3535	-0.00095943	708.869026951613	16.927	0.23944	16.927	16.856	17.096	0	498	49	0.991429299781895	0.0322853553889811	0.991429299781895	400.969135967896	0	13.0573416153669						740	28	5	NaN	NaN	NaN	1.6555E-07	1	15965	141.44	123.97	1	379410			15324	1107	12879	13256	15324	15324		
NSNLVGAAHEELQQSR	16	Unmodified	_NSNLVGAAHEELQQSR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.958968	1751.85507	0.54599	0.00031938	1.6031	0.00093772	2.149	0.0012571	584.959690889449	6.8264	0.13298	6.8264	6.7821	6.9151	0	705	91	0.851531465363931	0.0610742960217544	0.851531465363931	515.621847458658	0	36.9818880779881						810	16	4	NaN	NaN	NaN	0.00047046	1	25949	65.12	57.544	1	254100			15325	493	12880	13257	15325	15325		
NSNLVGAAHEELQQSR	16	Unmodified	_NSNLVGAAHEELQQSR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.934813	1751.85507	3.1751	0.0027843	-0.49862	-0.00043725	2.6764	0.0023471	876.934746832536	6.8264	0.27485	6.8264	6.7644	7.0392	0	243	64	1.16194328902838	0.0419010776122248	1.16194328902838	469.057678462825	0	16.9147860962436						994	32	5	NaN	NaN	NaN	2.8714E-19	1	25950	197.17	168.84	1	665110			15326	493	12880	13257	15326	15326		
NSNPALNDNLEK	12	Unmodified	_NSNPALNDNLEK_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.82568	1327.63681	2.6665	0.0017728	0.051212	3.4047E-05	2.7177	0.0018068	664.825920837235	5.0351	0.31919	5.0351	4.9287	5.2479	0	549	70	0.957085760909907	0.0465098281605225	0.957085760909907	387.327747860303	0	18.8222913040294						778	37	2	NaN	NaN	NaN	1.7192E-05	1	13207	115.04	70.217	1	854370			15327	71	12881	13258	15327	15327		
NSNVDSSYLESLYQSCPR	18	Unmodified	_NSNVDSSYLESLYQSCPR_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1059.97348	2117.9324	2.3092	0.0024476	-0.36083	-0.00038247	1.9483	0.0020652	1060.47537576451	12.848	0.070941	12.848	12.804	12.875	0	192	43	1.1958073123591	0.0278516583469064	1.1958073123591	482.072339953247	0	11.2279913093888						356	9	4	NaN	NaN	NaN	3.5895E-14	1	33582	117.03	93.886	1	85556			15328	2129	12882	13259	15328	15328		
NSPQEEVELK	10	Unmodified	_NSPQEEVELK_			0	0	0	Q99933	Q99933	Q99933	BAG1	BAG family molecular chaperone regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.793318	1171.57208	1.6495	0.00096792	-2.8084	-0.0016479	-1.1589	-0.00068002	586.793484585136	5.2125	0.21284	5.2125	5.1327	5.3455	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.656586606339	0	9.0292928626493						393	25	5	NaN	NaN	NaN	0.03871	1	8644	29.755	19.667	1	78434			15329	2682	12883	13260	15329	15329		
NSPVEAVFSYLTGK	14	Unmodified	_NSPVEAVFSYLTGK_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.390656	1510.76676	1.0761	0.00081395	0.26265	0.00019867	1.3388	0.0010126	756.390033111268	19.818	0.17735	19.818	19.694	19.871	0	468	43	1.01159370163332	0.0282184646673942	1.01159370163332	408.875232421207	0	11.4055981970048						379	21	3	NaN	NaN	NaN	0.00034069	1	18835	45.183	42.704	1	82983			15330	1227	12884	13261	15330	15330		
NSSHAGAFVIVTEEAIAK	18	Unmodified	_NSSHAGAFVIVTEEAIAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.481065	1842.94758	1.5395	0.0014202	-1.3787	-0.0012718	0.16082	0.00014835	922.981706005606	11.89	0.25718	11.89	11.775	12.032	0	258	43	1.15196821829984	0.0279398051055391	1.15196821829984	464.850390081945	0	11.2744684235229						716	30	5	NaN	NaN	NaN	2.804E-05	1	28305	81.409	62.212	1	193080			15331	1136	12885	13262	15331	15331		
NSSHAGAFVIVTEEAIAK	18	Unmodified	_NSSHAGAFVIVTEEAIAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.323135	1842.94758	0.27212	0.00016744	1.5946	0.00098117	1.8667	0.0011486	615.324031760271	11.882	0.20397	11.882	11.828	12.032	0	564	28	0.946969335010767	0.0182171330553085	0.946969335010767	573.189327233411	0	11.0266149642271						396	24	4	NaN	NaN	NaN	0.0020289	1	28307	66.485	64.502	1	134440			15332	1136	12885	13262	15332	15332		
NSSQDDLFPTSDTPR	15	Unmodified	_NSSQDDLFPTSDTPR_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.379005	1678.74346	2.543	0.0021371	1.4716	0.0012367	4.0146	0.0033738	840.380579646973	8.9198	0.21296	8.9198	8.8044	9.0174	0	360	55	1.08395544855938	0.0361010836697162	1.08395544855938	437.72483867973	0	14.578404533592						469	25	2	NaN	NaN	NaN	1.9532E-05	1	23875	88.42	74.622	1	180430			15333	2909	12886	13263	15333	15333		
NSSTIIQNPVETPK	14	Unmodified	_NSSTIIQNPVETPK_			0	0	0	P38432	P38432	P38432	COIL	Coilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.404295	1526.79404	2.6253	0.0020068	-0.64717	-0.0004947	1.9782	0.0015121	764.403252594581	7.997	0.13303	7.997	7.935	8.068	0	357	28	1.08596037261705	0.0180443182324475	1.08596037261705	438.891607247333	0	7.29262322126556						282	16	3	NaN	NaN	NaN	9.9918E-08	1	19328	136.06	101.11	1	66410			15334	1005	12887	13264	15334	15334		
NSSTYWEGK	9	Unmodified	_NSSTYWEGK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.240721	1070.46689	1.3295	0.00071293	0.98045	0.00052576	2.3099	0.0012387	536.241156432835	4.4411	0.2128	4.4411	4.3879	4.6007	0	708	55	0.849494101904619	0.0366547318720113	0.849494101904619	344.635371715558	0	14.8706354941392						397	25	3	NaN	NaN	NaN	0.011783	1	5957	49.96	30.704	1	113680			15335	857	12888	13265	15335	15335		
NSSYFVEWIPNNVK	14	Unmodified	_NSSYFVEWIPNNVK_			0	0	0	P04350;P07437;P68371;Q9BVA1;Q13885;Q13509;Q9BUF5	P04350;P07437;P68371;Q9BVA1;Q13509;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.920112	1695.82567	1.9313	0.0016395	-6.0996	-0.0051781	-4.1683	-0.0035386	849.416161376029	15.18	0.23046	15.18	15.021	15.251	0	357	70	1.08596037261705	0.0460878729529839	1.08596037261705	438.498330020284	0	18.6097539409912						1006	27	6	NaN	NaN	NaN	4.7835E-05	1	24364	86.838	82.022	1	240250			15336	1449;560;512;2761;2745;1675	12889	13266	15336	15336		
NSSYFVEWIPNNVK	14	Unmodified	_NSSYFVEWIPNNVK_			0	0	0	P04350;P07437;P68371;Q9BVA1;Q13885;Q13509;Q9BUF5	P04350;P07437;P68371;Q9BVA1;Q13509;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB2A;TUBB3;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-2A chain;Tubulin beta-3 chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.920112	1695.82567	2.2194	0.0018841	1.662	0.0014109	3.8813	0.0032949	848.921462630667	15.322	0.39027	15.322	15.216	15.606	1.7764E-15	330	103	1.10399226369747	0.068097108894422	1.10399226369747	445.779372525047	0	27.4968289832544						2966	45	6	NaN	NaN	NaN	5.6744E-33	1	24371	256.71	237.15	1	3049800			15337	1449;560;512;2761;2745;1675	12889	13266	15337	15337		
NSSYVHGGVDASGK	14	Unmodified	_NSSYVHGGVDASGK_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.323305	1376.63206	2.5127	0.001732	-1.0805	-0.00074479	1.4322	0.00098725	689.322730959601	2.6409	0.15076	2.6409	2.6143	2.7651	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.093055546102	0	8.17550718587802						196	18	3	NaN	NaN	NaN	0.0053908	1	14690	34.472	29.945	1	35923			15338	3292	12890	13267	15338	15338		
NSTECTLILTEGDSAK	16	Unmodified	_NSTECTLILTEGDSAK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.911824	1737.80909	2.6567	0.0023111	-1.2471	-0.0010849	1.4096	0.0012262	869.910799362014	9.1238	0.20397	9.1238	9.0706	9.2745	0	300	67	1.12400150285141	0.0439900595080689	1.12400150285141	453.769990596436	0	17.759201245438						1028	24	5	NaN	NaN	NaN	4.62E-05	1	25534	92.747	66.282	1	365260			15339	652	12891	13268	15339	15339		
NSTFSEIFK	9	Unmodified	_NSTFSEIFK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.769114	1071.52368	0.49799	0.00026731	-2.1335	-0.0011452	-1.6355	-0.00087788	536.767310546777	10.773	0.12413	10.773	10.738	10.862	0	669	19	0.875957769340875	0.0121979015150934	0.875957769340875	355.367106563275	0	4.9485638683521						132	15	2	NaN	NaN	NaN	0.012265	1	5989	48.157	41.927	1	45170			15340	888	12892	13269	15340	15340		
NSTFSEIFK	9	Unmodified	_NSTFSEIFK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.769114	1071.52368	0.80996	0.00043476	0.10595	5.687E-05	0.91591	0.00049163	536.769178844062	11.394	0.33716	11.394	11.279	11.616	1.7764E-15	672	67	0.873923798053065	0.0447505001299262	0.873923798053065	354.541935122272	0	18.1548196182549						1515	39	5	NaN	NaN	NaN	0.0066121	1	5990	65.156	52.329	1	1723900			15341	888	12892	13269	15341	15341		
NSTIVFPLPIDMLQGIIGAK	20	Unmodified	_NSTIVFPLPIDMLQGIIGAK_			0	0	0	P27105	P27105	P27105	STOM	Erythrocyte band 7 integral membrane protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.09775	2126.18095	-0.011956	-1.2722E-05	0.5746	0.00061143	0.56264	0.00059871	1064.60029897984	20.217	0.026579	20.217	20.199	20.226	0	120	40	1.2434810169581	0.0257860906510312	1.2434810169581	501.278628249308	0	10.3950249124686						135	4	4	NaN	NaN	NaN	1.4347E-05	1	33700	61.067	59.592	1	46757			15342	861	12893	13270	15342	15342		
NSVEVALNK	9	Unmodified	_NSVEVALNK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.269281	972.52401	0.3155	0.00015374	-0.82204	-0.00040056	-0.50654	-0.00024682	487.269329242811	4.9908	0.097532	4.9908	4.9553	5.0529	0	744	25	0.82502364452135	0.0163295196874556	0.82502364452135	335.135709733661	0	6.63327070249022						121	12	2	NaN	NaN	NaN	0.0047318	1	3688	39.324	28.496	1	41260			15343	1251	12894	13271	15343	15343		
NSVFQQGMK	9	Unmodified	_NSVFQQGMK_			0	0	0	P05023;P13637;P50993	P05023	P05023	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.755484	1037.49641	0.42713	0.000222	-0.78231	-0.00040661	-0.35518	-0.0001846	519.755106195172	5.2213	0.17739	5.2213	5.1504	5.3278	0	696	25	0.857641857947968	0.0162932496974951	0.857641857947968	348.081312795887	0	6.61275530322752						130	21	2	NaN	NaN	NaN	0.012689	1	5174	53.878	34.923	1	44143			15344	522	12895	13272	15344	15344		
NSVTGGTAAFEPSVDYCVVK	20	Unmodified	_NSVTGGTAAFEPSVDYCVVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.99896	2099.98337	2.5687	0.0026998	-0.73357	-0.00077098	1.8352	0.0019288	1051.49994310459	12.148	0.12416	12.148	12.103	12.227	0	192	61	1.1958073123591	0.0398099498942783	1.1958073123591	482.09918335751	0	16.0496964144435						668	15	5	NaN	NaN	NaN	3.8615E-22	1	33307	164.28	150.94	1	217530			15345	867	12896	13273	15345	15345		
NSVTGGTAAFEPSVDYCVVK	20	Unmodified	_NSVTGGTAAFEPSVDYCVVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.99896	2099.98337	1.7508	0.0018401	0.92922	0.0009766	2.68	0.0028167	1051.50170049506	12.148	0.062082	12.148	12.121	12.183	0	135	31	1.23356193185193	0.019847693635112	1.23356193185193	497.320251613867	0	8.0017547053759						176	8	4	NaN	NaN	NaN	2.3855E-05	1	33308	83.061	76.539	1	33967			15346	867	12896	13273	15346	15346		
NSVTPDMMEEMYK	13	Unmodified	_NSVTPDMMEEMYK_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.830402	1573.64625	2.3263	0.0018327	-0.47793	-0.00037653	1.8484	0.0014562	787.830670202737	11.429	0.2927	11.429	11.367	11.66	0	408	76	1.0518390438467	0.0502546402134063	1.0518390438467	424.98770836519	0	20.3050119730347						1686	34	6	NaN	NaN	NaN	0.0029134	1	20770	43.306	40.203	1	1475600			15347	1086	12897	13274	15347	15347		
NSVTPDMMEEMYK	13	Oxidation (M)	_NSVTPDM(Oxidation (M))MEEMYK_	NSVTPDM(0.737)M(0.263)EEMYK	NSVTPDM(4.5)M(-4.5)EEM(-39)YK	0	1	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.827859	1589.64117	1.969	0.0015669	-0.50174	-0.0003993	1.4672	0.0011677	795.828000485239	8.8753	0.15977	8.8753	8.8044	8.9642	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	423.326484053421	0	8.12072649810898						416	19	4	NaN	NaN	NaN	0.00055553	1	21259	88.24	87.95	3	92441			15348	1086	12897	13275	15348	15348	385;386	
NSVTPDMMEEMYK	13	Oxidation (M)	_NSVTPDMM(Oxidation (M))EEMYK_	NSVTPDM(0.256)M(0.671)EEM(0.072)YK	NSVTPDM(-4.2)M(4.2)EEM(-9.7)YK	0	1	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.827859	1589.64117	2.1789	0.0017341	0.026211	2.0859E-05	2.2051	0.0017549	795.828112631376	7.935	0.18634	7.935	7.8995	8.0858	0	438	61	1.03173026378327	0.0402175744908813	1.03173026378327	416.826313959533	0	16.2481841619686						590	22	4	NaN	NaN	NaN	0.0012092	1	21260	54.27	53.218	3	133150			15349	1086	12897	13275	15349	15349	385;386	
NSVVEASEAAYK	12	Unmodified	_NSVVEASEAAYK_			0	0	0	Q04917	Q04917	Q04917	YWHAH	14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.311874	1266.6092	1.9309	0.0012248	-1.3196	-0.00083704	0.61127	0.00038774	634.310912388839	5.7357	0.18618	5.7357	5.7002	5.8864	0	585	85	0.932794566565362	0.0566638028418713	0.932794566565362	377.684532619637	0	22.9429315519966						415	22	3	NaN	NaN	NaN	0.0039892	1	11405	81.799	52.044	1	128760			15350	1547	12898	13276	15350	15350		
NSYLEVLLK	9	Unmodified	_NSYLEVLLK_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.810782	1077.60701	0.58578	0.00031621	-1.8846	-0.0010174	-1.2989	-0.00070114	539.809974964471	14.542	0.266	14.542	14.489	14.755	0	666	73	0.877991458330206	0.0487713312849145	0.877991458330206	356.166631008074	0	19.784612468284						892	31	4	NaN	NaN	NaN	0.0073458	1	6158	76.605	60.147	1	708470			15351	1811	12899	13277	15351	15351		
NSYVAGQYDDAASYQR	16	Unmodified	_NSYVAGQYDDAASYQR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.397729	1806.78091	3.2949	0.0029799	-0.89243	-0.00080711	2.4024	0.0021727	904.397267168924	6.8885	0.28382	6.8885	6.8175	7.1014	0	336	73	1.09998710857178	0.0480817590867202	1.09998710857178	443.940969021492	0	19.4051935289781						1285	33	6	NaN	NaN	NaN	9.8298E-18	1	27387	183	168.05	1	964540			15352	653	12900	13278	15352	15352		
NTAELQPESGK	11	Unmodified	_NTAELQPESGK_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.290942	1172.56733	1.354	0.00079518	-4.6127	-0.002709	-3.2587	-0.0019138	587.288529114516	2.9158	0.27486	2.9158	2.8804	3.1552	0	675	40	0.871889544407995	0.0264416320907981	0.871889544407995	353.329554832927	0	10.7153597099748						243	32	2	NaN	NaN	NaN	0.0067574	1	8663	71.066	54.608	1	96851			15353	166	12901	13279	15353	15353		
NTAEWLLSHTK	11	Unmodified	_NTAEWLLSHTK_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.894577	1298.6619	-2.3166	-0.0010051	0.69204	0.00030027	-1.6245	-0.00070487	433.894818757695	9.5583	0.097522	9.5583	9.5228	9.6204	0	843	28	0.757518876820989	0.0184540131906292	0.757518876820989	459.947981267517	0	11.2048509588756						183	12	3	NaN	NaN	NaN	0.056873	1	12314	15.879	14.08	1	60575			15354	480	12902	13280	15354	15354		
NTAEWLLSHTK	11	Unmodified	_NTAEWLLSHTK_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.338227	1298.6619	1.7107	0.0011125	0.049407	3.2131E-05	1.7601	0.0011447	650.33941396456	9.5583	0.23941	9.5583	9.4962	9.7356	0	489	73	0.997481546940468	0.0484414451748214	0.997481546940468	403.768481216494	0	19.6085118628636						867	28	3	NaN	NaN	NaN	7.0206E-17	1	12318	187.85	172.27	1	690650			15355	480	12902	13280	15355	15355		
NTCEAVVLGTLHPR	14	Unmodified	_NTCEAVVLGTLHPR_			0	0	0	Q9NQT4	Q9NQT4	Q9NQT4	EXOSC5	Exosome complex component RRP46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.94008	1565.79841	-0.29276	-0.0001531	-0.6649	-0.0003477	-0.95765	-0.0005008	523.273925916129	9.2568	0.12419	9.2568	9.2036	9.3278	0	699	25	0.85560534332665	0.0162909868365219	0.85560534332665	518.57117013035	0	9.87375332831232						205	15	3	NaN	NaN	NaN	0.0029559	1	20530	58.476	55.374	1	42419			15356	3002	12903	13281	15356	15356		
NTCEAVVLGTLHPR	14	Unmodified	_NTCEAVVLGTLHPR_			0	0	0	Q9NQT4	Q9NQT4	Q9NQT4	EXOSC5	Exosome complex component RRP46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.906482	1565.79841	1.7275	0.0013542	0.62845	0.00049264	2.356	0.0018469	783.907234213419	9.2568	0.11534	9.2568	9.2036	9.3189	0	294	25	1.12800004657306	0.0159941760224986	1.12800004657306	455.779913356465	0	6.46260980563738						178	14	3	NaN	NaN	NaN	4.3926E-06	1	20531	95.656	86.394	1	34144			15357	3002	12903	13281	15357	15357		
NTDEMVELR	9	Unmodified	_NTDEMVELR_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.760963	1105.50737	1.2964	0.00071789	1.4749	0.00081672	2.7713	0.0015346	553.762043126888	6.8796	0.34588	6.8796	6.8175	7.1634	0	633	76	0.900343422309015	0.0507858560076192	0.900343422309015	365.117560133899	0	20.595261069669						1378	40	5	NaN	NaN	NaN	1.5197E-08	1	6855	162.59	137.74	1	1001400			15358	1360	12904	13282	15358	15358		
NTDQASMPDNTAAQK	15	Unmodified	_NTDQASMPDNTAAQK_			0	0	0	P35579;P35749	P35579	P35579	MYH9;MYH11	Myosin-9;Myosin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.354476	1590.6944	2.8807	0.0022941	-2.1183	-0.001687	0.7624	0.00060714	796.353104143366	3.2794	0.3371	3.2794	3.2173	3.5544	0	477	40	1.0055473068722	0.0262082910405103	1.0055473068722	406.245898740156	0	10.5882743411781						643	39	4	NaN	NaN	NaN	8.5107E-12	1	21289	163.93	151.35	1	157900			15359	972	12905	13283	15359	15359		
NTEDITFPSVYVGLK	15	Unmodified	_NTEDITFPSVYVGLK_			0	0	0	O95361	O95361	O95361	TRIM16	Tripartite motif-containing protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.935428	1681.8563	2.4486	0.0020616	-1.4075	-0.001185	1.0411	0.00087657	841.934921607807	15.544	0.14188	15.544	15.464	15.606	0	336	46	1.09998710857178	0.0300366027940016	1.09998710857178	444.192051906487	0	12.1292514461292						375	17	5	NaN	NaN	NaN	0.00027217	1	23962	68.108	57.858	1	68014			15360	425	12906	13284	15360	15360		
NTEDLTEEWLR	11	Unmodified	_NTEDLTEEWLR_			0	0	0	P60983	P60983	P60983	GMFB	Glia maturation factor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.333338	1404.65212	0.67739	0.00047643	0.56611	0.00039817	1.2435	0.00087459	703.33312023834	13.061	0.11527	13.061	13.008	13.123	0	513	43	0.981336640919867	0.0282653130088721	0.981336640919867	396.917566900234	0	11.4323656117016						295	14	4	NaN	NaN	NaN	3.4833E-05	1	15601	103.87	57.84	1	94816			15361	1318	12907	13285	15361	15361		
NTEIGFLQDALSK	13	Unmodified	_NTEIGFLQDALSK_			0	0	0	Q6PI48	Q6PI48	Q6PI48	DARS2	Aspartate--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.375006	1434.73546	1.1597	0.00083307	-1.1789	-0.00084686	-0.019196	-1.379E-05	718.374098330552	14.976	0.16849	14.976	14.905	15.074	0	453	34	1.02166545906632	0.0221486894009117	1.02166545906632	413.144738960225	0	8.95656637860043						395	20	4	NaN	NaN	NaN	3.1031E-07	1	16536	106.11	69.598	1	139030			15362	2073	12908	13286	15362	15362		
NTELAVFHDETEIQNQTDLLSLSGK	25	Unmodified	_NTELAVFHDETEIQNQTDLLSLSGK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	934.797921	2801.37193	1.15	0.001075	0.83238	0.00077811	1.9824	0.0018531	935.132695454341	15.624	0.1064	15.624	15.588	15.695	0	411	31	1.04982941439551	0.0200976833254141	1.04982941439551	633.824049645449	0	12.1337760774597						318	13	4	NaN	NaN	NaN	7.621E-33	1	37902	224.45	220.21	1	77644			15363	1036	12909	13287	15363	15363		
NTEYFNQLK	9	Unmodified	_NTEYFNQLK_			0	0	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.785296	1155.55604	0.8277	0.00047906	5.6005	0.0032415	6.4282	0.0037205	578.787990521211	7.4294	0.13299	7.4294	7.3674	7.5003	0	606	22	0.918606045818476	0.0141904869950359	0.918606045818476	372.324886401348	0	5.75161842495714						128	16	2	NaN	NaN	NaN	0.0098907	1	8212	56.014	40.433	1	50047			15364	2848	12910	13288	15364	15364		
NTFEVIPVNSAGSPVGDVPFIR	22	Unmodified	_NTFEVIPVNSAGSPVGDVPFIR_			0	0	0	Q9P265	Q9P265	Q9P265	DIP2B	Disco-interacting protein 2 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1158.10515	2314.19575	-0.16527	-0.0001914	0.39601	0.00045862	0.23074	0.00026723	1158.60658024124	17.991	0.053182	17.991	17.965	18.018	0	114	49	1.24744674793813	0.0316997848796292	1.24744674793813	502.61207740252	0	12.7722443927151						139	7	3	NaN	NaN	NaN	0.0085186	1	35766	27.236	21.62	1	23837			15365	3152	12911	13289	15365	15365		
NTGESASQLLDAETAER	17	Unmodified	_NTGESASQLLDAETAER_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.421401	1790.82825	2.1426	0.0019207	9.7037	0.0086986	11.846	0.010619	896.42996838462	9.3544	0.1951	9.3544	9.2568	9.4519	0	318	76	1.11199926528787	0.0500610283962133	1.11199926528787	448.819338103507	0	20.205370930486						1058	23	4	NaN	NaN	NaN	6.2165E-05	1	26989	100.56	25.084	1	271910			15366	2418	12912	13290	15366	15366		
NTGVILANDANAER	14	Unmodified	_NTGVILANDANAER_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.370786	1456.72702	1.7115	0.0012483	-0.11205	-8.1726E-05	1.5995	0.0011666	729.370126907092	6.3299	0.21285	6.3299	6.2411	6.454	0	474	85	1.00756305028564	0.0563902078588648	1.00756305028564	407.383210969243	0	22.7999865003534						741	25	5	NaN	NaN	NaN	0.0094849	1	17151	65.408	61.8	1	215740			15367	1077	12913	13291	15367	15367		
NTHATTHNAYDLEVIDIFK	19	Unmodified	_NTHATTHNAYDLEVIDIFK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	551.276101	2201.0753	-0.96869	-0.00053402	0.27303	0.00015051	-0.69566	-0.0003835	551.527145521034	14.187	0.11527	14.187	14.143	14.258	0	720	25	0.841341816837976	0.0163091029338942	0.841341816837976	678.178602094297	0	13.1462437831619						287	14	4	NaN	NaN	NaN	0.0091389	1	34689	33.456	32.937	1	98686			15368	611	12914	13292	15368	15368		
NTHATTHNAYDLEVIDIFK	19	Unmodified	_NTHATTHNAYDLEVIDIFK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.699042	2201.0753	0.90876	0.00066766	-0.30781	-0.00022615	0.60095	0.00044152	735.033349215899	14.187	0.16848	14.187	14.134	14.302	0	498	40	0.991429299781895	0.0262372893807942	0.991429299781895	599.37119451922	0	15.861822401832						592	20	5	NaN	NaN	NaN	5.8129E-15	1	34690	147.14	132.75	1	239990			15369	611	12914	13292	15369	15369		
NTHATTHNAYDLEVIDIFK	19	Unmodified	_NTHATTHNAYDLEVIDIFK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1101.54492	2201.0753	0.59684	0.00065744	0.37174	0.00040949	0.96858	0.0010669	1102.04599947369	14.187	0.088663	14.187	14.143	14.232	0	78	46	1.27121832677567	0.0296961677825143	1.27121832677567	512.34705957098	0	11.968631920599						372	11	4	NaN	NaN	NaN	0.0015807	1	34691	51.577	50.307	1	78055			15370	611	12914	13292	15370	15370		
NTIEMQAITALAHLR	15	Unmodified	_NTIEMQAITALAHLR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.306651	1680.89812	-0.57477	-0.00032262	-2.4412	-0.0013703	-3.016	-0.0016929	561.305516173105	16.581	0.15074	16.581	16.519	16.67	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	529.356088879934	0	12.3210964898961						348	18	3	NaN	NaN	NaN	2.4707E-05	1	23945	92.707	91.826	1	114900			15371	2808	12915	13293	15371	15371		
NTIEMQAITALAHLR	15	Unmodified	_NTIEMQAITALAHLR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.456339	1680.89812	1.1128	0.00093639	-0.16675	-0.00014031	0.94608	0.00079608	841.455916244984	16.599	0.10639	16.599	16.537	16.644	0	222	28	1.17589687683038	0.0179329343895447	1.17589687683038	474.847814504221	0	7.24163391391602						204	13	3	NaN	NaN	NaN	0.00014822	1	23946	82.437	77.049	1	47354			15372	2808	12915	13293	15372	15372		
NTIQWLENELNR	12	Unmodified	_NTIQWLENELNR_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.388979	1528.76341	0.95409	0.00073025	1.5654	0.0011981	2.5194	0.0019283	765.390000214623	16.457	0.16851	16.457	16.386	16.555	0	408	31	1.0518390438467	0.0200976833254141	1.0518390438467	425.096520592219	0	8.12239791209254						273	20	3	NaN	NaN	NaN	3.123E-05	1	19385	124.46	113.67	1	69880			15373	944	12916	13294	15373	15373		
NTLCAPEVISLINTR	15	Unmodified	_NTLCAPEVISLINTR_			0	0	0	Q96CS3	Q96CS3	Q96CS3	FAF2	FAS-associated factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.953629	1699.8927	1.1461	0.00097531	4.1917	0.0035669	5.3378	0.0045422	851.459303282351	15.872	0.21284	15.872	15.766	15.978	0	315	34	1.11400032671325	0.0220086485817799	1.11400032671325	449.811779978583	0	8.88666650817044						412	25	4	NaN	NaN	NaN	4.6287E-07	1	24498	128.41	112.12	1	129120			15374	2496	12917	13295	15374	15374		
NTLETSSLNFK	11	Unmodified	_NTLETSSLNFK_			0	0	0	Q14151	Q14151	Q14151	SAFB2	Scaffold attachment factor B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.322242	1252.62993	1.359	0.00085255	0.042646	2.6753E-05	1.4017	0.00087931	627.321903332083	8.8044	0.19533	8.8044	8.7599	8.9553	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.478734355585	0	8.18354895003012						296	23	3	NaN	NaN	NaN	0.0008605	1	10989	90.263	67.876	1	71133			15375	1727	12918	13296	15375	15375		
NTLEWCLPVIDAK	13	Unmodified	_NTLEWCLPVIDAK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.900334	1557.78611	0.96847	0.00075531	-0.26751	-0.00020863	0.70096	0.00054668	779.89996613083	16.448	0.24828	16.448	16.315	16.564	0	405	52	1.05384839605172	0.0341495757377568	1.05384839605172	425.837384542801	0	13.7991062755283						862	29	4	NaN	NaN	NaN	8.0221E-08	1	20293	165.09	130.9	1	261330			15376	1107	12919	13297	15376	15376		
NTLFNLSNFLDK	12	Unmodified	_NTLFNLSNFLDK_			0	0	0	Q13492;O60641	Q13492	Q13492	PICALM;SNAP91	Phosphatidylinositol-binding clathrin assembly protein;Clathrin coat assembly protein AP180	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.372266	1424.72998	0.64922	0.00046313	-0.25922	-0.00018492	0.38999	0.00027821	713.372291532447	18.107	0.14185	18.107	18.071	18.213	0	465	37	1.01360860968299	0.0241772305983219	1.01360860968299	409.914163597404	0	9.77753066039196						327	17	4	NaN	NaN	NaN	4.1707E-05	1	16228	88.24	62.986	1	101600			15377	1672	12920	13298	15377	15377		
NTLIQFEDFGNHNAFR	16	Unmodified	_NTLIQFEDFGNHNAFR_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.64298	1921.90711	0.68006	0.00043636	-1.0904	-0.00069965	-0.41035	-0.0002633	641.977054935047	13.496	0.088666	13.496	13.46	13.549	0	618	31	0.910492137470517	0.020293211090572	0.910492137470517	550.941130716289	0	12.2794741480853						230	11	5	NaN	NaN	NaN	1.8718E-06	1	30100	91.939	85.563	1	80136			15378	817	12921	13299	15378	15378		
NTLTQTTENLR	11	Unmodified	_NTLTQTTENLR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.836048	1289.65754	1.7241	0.0011135	-0.64468	-0.00041636	1.0794	0.0006971	645.836206245921	6.3919	0.15961	6.3919	6.2855	6.4451	0	531	55	0.969216233931596	0.0363763278490683	0.969216233931596	392.355856845365	0	14.7257802567063						353	19	3	NaN	NaN	NaN	0.00051043	1	12054	85.622	58.675	1	106740			15379	718	12922	13300	15379	15379		
NTNAAEESLPEIQK	14	Unmodified	_NTNAAEESLPEIQK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.383559	1542.75257	1.6987	0.0013121	-1.618	-0.0012497	0.080764	6.2381E-05	772.381188780636	7.589	0.2128	7.589	7.4738	7.6865	0	456	91	1.01965166402748	0.0604097440648067	1.01965166402748	412.054598269	0	24.4123691455931						658	25	4	NaN	NaN	NaN	0.0002851	1	19813	95.656	92.311	1	166470			15380	3042	12923	13301	15380	15380		
NTPSPFIETFTEDDEASR	18	Unmodified	_NTPSPFIETFTEDDEASR_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.46072	2054.90689	1.8962	0.0019502	1.8019	0.0018532	3.6981	0.0038033	1028.96368388115	13.77	0.1596	13.77	13.7	13.859	0	219	49	1.17788915118882	0.0318785889633038	1.17788915118882	474.943754912074	0	12.853957206626						409	19	3	NaN	NaN	NaN	0.0098146	1	32614	40.53	38.428	1	87981			15381	1108	12924	13302	15381	15381		
NTPVYVSSPTWENHNAVFSAAGFK	24	Unmodified	_NTPVYVSSPTWENHNAVFSAAGFK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.09071	2622.2503	1.5476	0.0013543	0.23331	0.00020417	1.781	0.0015585	875.425391674299	13.744	0.16844	13.744	13.655	13.824	0	474	70	1.00756305028564	0.0463813530648067	1.00756305028564	608.511367190809	0	28.0117264697468						807	20	5	NaN	NaN	NaN	0.016842	1	37324	32.113	30.489	1	223570			15382	736	12925	13303	15382	15382		
NTSEQDQPMGGWEMIR	16	Unmodified	_NTSEQDQPMGGWEMIR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.909092	1877.80363	1.964	0.001846	0.72766	0.00068393	2.6917	0.0025299	939.910618369567	12.378	0.12414	12.378	12.316	12.44	0	321	37	1.10999792833052	0.0240177010058356	1.10999792833052	447.852119604927	0	9.69044899000744						399	15	4	NaN	NaN	NaN	1.5838E-08	1	29089	133.13	129.15	1	100180			15383	784	12926	13304	15383	15383		
NTTWEDVGLWDPSLTK	16	Unmodified	_NTTWEDVGLWDPSLTK_			0	0	0	Q9H2P0	Q9H2P0	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.451973	1860.88939	1.1408	0.0010626	-4.3391	-0.0040417	-3.1983	-0.0029791	931.950304910934	16.537	0.14185	16.537	16.475	16.617	0	264	37	1.14797626962532	0.0239582842572883	1.14797626962532	463.20617498486	0	9.66712074426465						280	17	3	NaN	NaN	NaN	0.0030178	1	28710	30.027	24.639	1	63809			15384	2871	12927	13305	15384	15384		
NTTYDLIANIVHDGK	15	Unmodified	_NTTYDLIANIVHDGK_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.621293	1672.84205	-0.58812	-0.00032854	-0.95498	-0.00053347	-1.5431	-0.00086201	558.621208722195	14.897	0.088649	14.897	14.861	14.95	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	536.766772378738	0	11.0809610899605						201	11	3	NaN	NaN	NaN	0.020927	1	23702	35.45	32.365	1	86944			15385	1949	12928	13306	15385	15385		
NTTYDLIANIVHDGK	15	Unmodified	_NTTYDLIANIVHDGK_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.428301	1672.84205	1.3144	0.0011007	2.4016	0.0020112	3.716	0.0031119	837.430102882276	14.897	0.11525	14.897	14.852	14.967	0	231	46	1.16991841121525	0.0299046606743485	1.16991841121525	472.452198081542	0	12.0765025432863						317	14	4	NaN	NaN	NaN	3.5784E-06	1	23703	90.156	72.058	1	87331			15386	1949	12928	13306	15386	15386		
NTVELLVEDK	10	Unmodified	_NTVELLVEDK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.313886	1158.61322	0.67435	0.00039133	-4.0739	-0.0023641	-3.3995	-0.0019728	580.312065050936	9.6824	0.18621	9.6824	9.576	9.7622	0	615	43	0.912521036363781	0.0284065601691176	0.912521036363781	369.847072544204	0	11.5132503262211						380	22	3	NaN	NaN	NaN	0.028932	1	8326	43.168	22.018	1	141890			15387	326	12929	13307	15387	15387		
NTVGNVPLEWYDDFPHVGYDLDGR	24	Unmodified	_NTVGNVPLEWYDDFPHVGYDLDGR_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	926.764663	2777.27216	0.029742	2.7564E-05	0.91318	0.0008463	0.94292	0.00087386	927.099315275736	18.027	0.088682	18.027	17.991	18.08	0	489	19	0.997481546940468	0.0121019851068255	0.997481546940468	602.245359500915	0	7.30676611882211						147	11	4	NaN	NaN	NaN	0.015366	1	37834	30.392	29.295	1	26261			15388	1723	12930	13308	15388	15388		
NTVLATWQPYTTSK	14	Unmodified	_NTVLATWQPYTTSK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.414662	1608.81477	1.8892	0.0015216	-2.4742	-0.0019927	-0.58502	-0.00047119	805.412628383403	11.474	0.11529	11.474	11.429	11.545	0	417	43	1.04580932352505	0.028132878019673	1.04580932352505	422.470868742376	0	11.3647116638178						349	14	3	NaN	NaN	NaN	2.7141E-11	1	21872	115.05	103.7	1	98606			15389	2796	12931	13309	15389	15389		
NTVLCNVVEQFLQADLAR	18	Unmodified	_NTVLCNVVEQFLQADLAR_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.361484	2089.06262	-0.31086	-0.00021678	0.75247	0.00052474	0.44161	0.00030796	697.696685518194	20.119	0.0088664	20.119	20.119	20.128	0	558	13	0.951016745717027	0.00809482152890306	0.951016745717027	575.132807963523	0	4.89538954687021						26	2	3	NaN	NaN	NaN	0.065108	1	33174	6.9894	3.9045	1	8565.5			15390	1745	12932	13310	15390	15390		
NTVSQSISGDPEIDK	15	Unmodified	_NTVSQSISGDPEIDK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.386299	1588.75804	2.2124	0.0017597	-1.3279	-0.0010562	0.88457	0.00070357	795.384995785561	6.6668	0.15963	6.6668	6.6136	6.7732	0	429	55	1.03776581230406	0.0362008098863784	1.03776581230406	419.266735943342	0	14.6254532762737						435	19	3	NaN	NaN	NaN	4.6287E-07	1	21235	119.52	101.79	1	151070			15391	2796	12933	13311	15391	15391		
NTVSQSISGDPEIDKK	16	Unmodified	_NTVSQSISGDPEIDKK_			0	0	1	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.43378	1716.85301	3.4029	0.0029245	-2.2905	-0.0019685	1.1124	0.00095601	859.431970123351	5.1504	0.070937	5.1504	5.1238	5.1947	0	300	46	1.12400150285141	0.0300035355206882	1.12400150285141	453.813824919451	0	12.113879902481						143	9	3	NaN	NaN	NaN	0.014501	1	24963	69.327	63.299	1	21798			15392	2796	12934	13312	15392	15392		
NTVVLFVPQQEAWVVER	17	Unmodified	_NTVVLFVPQQEAWVVER_			0	0	0	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.54146	2013.06836	0.75759	0.0007633	0.43176	0.00043502	1.1894	0.0011983	1008.0432876148	16.714	0.14187	16.714	16.661	16.803	0	195	55	1.19381749893585	0.0358191140303898	1.19381749893585	481.433462619788	0	14.4448545200543						589	17	4	NaN	NaN	NaN	0.00022273	1	31858	58.508	52.304	1	179160			15393	3256	12935	13313	15393	15393		
NVAAYTEQEEADSQGCVQK	19	Unmodified	_NVAAYTEQEEADSQGCVQK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.96839	2125.92223	2.2914	0.002438	-1.2359	-0.001315	1.0555	0.001123	1064.46832599144	6.0195	0.044331	6.0195	6.0017	6.0461	0	228	28	1.17191150690002	0.0179353983689632	1.17191150690002	472.427528429553	0	7.23021821439585						107	6	3	NaN	NaN	NaN	1.0918E-19	1	33691	153.08	151.99	1	19579			15394	1668	12936	13314	15394	15394		
NVAQYNANHPDFPMQIEQLER	21	Unmodified	_NVAQYNANHPDFPMQIEQLER_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.732528	2513.17576	0.97604	0.00081864	3.1174	0.0026147	4.0935	0.0034333	839.069310461868	13.034	0.079801	13.034	12.999	13.079	0	528	49	0.971237000454584	0.0323434604594182	0.971237000454584	586.706683968259	0	19.5380987599547						375	10	4	NaN	NaN	NaN	0.00046548	1	36892	25.511	25.206	1	84380			15395	1737	12937	13315	15395	15395		
NVCEQGTSTVDQNFGK	16	Unmodified	_NVCEQGTSTVDQNFGK_			0	0	0	Q12888	Q12888	Q12888	TP53BP1	Tumor suppressor p53-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.399415	1782.78428	2.5363	0.0022634	-2.6656	-0.0023788	-0.1293	-0.00011539	892.397340057532	6.2323	0.079856	6.2323	6.1968	6.2767	0	369	46	1.07793901817685	0.030094602206975	1.07793901817685	435.087243679354	0	12.1470484907442						272	10	4	NaN	NaN	NaN	1.4395E-08	1	26744	120.21	116.47	1	64449			15396	1602	12938	13316	15396	15396		
NVCLPPEMEVALTEDQVPALK	21	Unmodified	_NVCLPPEMEVALTEDQVPALK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.064116	2352.17052	1.3383	0.0010506	-1.8106	-0.0014215	-0.47239	-0.00037086	785.396186604015	17.823	0.12412	17.823	17.761	17.885	0	417	52	1.04580932352505	0.0341967320242422	1.04580932352505	631.992209968615	0	20.6654002403217						420	15	5	NaN	NaN	NaN	0.0035561	1	36061	29.408	26.662	1	87797			15397	869	12939	13317	15397	15397		
NVCLPPEMEVALTEDQVPALK	21	Unmodified	_NVCLPPEMEVALTEDQVPALK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1177.09254	2352.17052	1.1233	0.0013223	-1.4771	-0.0017387	-0.35374	-0.00041638	1177.59278504675	17.823	0.1507	17.823	17.752	17.903	0	75	73	1.27319752866042	0.0475301589690296	1.27319752866042	512.937953809358	0	19.1486567771292						804	18	5	NaN	NaN	NaN	0.018914	1	36062	28.432	27.68	1	190780			15398	869	12939	13317	15398	15398		
NVCTEAGMFAIR	12	Unmodified	_NVCTEAGMFAIR_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.823572	1367.63259	1.3665	0.0009358	2.1265	0.0014563	3.493	0.0023921	684.823877781423	11.358	0.22174	11.358	11.296	11.518	0	519	76	0.97729762293174	0.0504493774018596	0.97729762293174	395.388207061898	0	20.4104547174402						491	26	3	NaN	NaN	NaN	0.015752	1	14417	32.549	24.366	1	107210			15399	1390	12940	13318	15399	15399		
NVCTEAGMFAIR	12	Oxidation (M)	_NVCTEAGM(Oxidation (M))FAIR_	NVCTEAGM(1)FAIR	NVCTEAGM(40)FAIR	0	1	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.821029	1383.62751	0.57676	0.00039959	2.6673	0.001848	3.2441	0.0022475	692.822994627627	9.3366	0.1153	9.3366	9.2923	9.4076	0	510	34	0.983355730988811	0.0222069226755673	0.983355730988811	397.793126420966	0	8.98328135070699						180	14	2	NaN	NaN	NaN	0.068866	1	14933	40.386	37.284	1	56760			15400	1390	12940	13319	15400	15400	495	
NVDAILEEYANCK	13	Unmodified	_NVDAILEEYANCK_			0	0	0	Q15014	Q15014	Q15014	MORF4L2	Mortality factor 4-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.861405	1537.70826	1.879	0.0014465	1.2624	0.00097187	3.1414	0.0024184	769.862355990829	13.336	0.053242	13.336	13.309	13.363	0	348	34	1.09197348738011	0.0220480903949298	1.09197348738011	441.293658056556	0	8.91018195586776						128	7	3	NaN	NaN	NaN	6.5797E-05	1	19653	101.45	94.305	1	23178			15401	1791	12941	13320	15401	15401		
NVDLLSDMVQEHDEPILK	18	Unmodified	_NVDLLSDMVQEHDEPILK_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.017383	2094.03032	0.95034	0.0006643	0.41407	0.00028944	1.3644	0.00095375	699.352199565696	15.26	0.25713	15.26	15.198	15.455	0	555	109	0.953040030838688	0.0729039666008824	0.953040030838688	576.347382201791	0	44.0884002171125						1669	30	7	NaN	NaN	NaN	3.13E-14	1	33240	144.16	122.49	1	1537800			15402	1269	12942	13321	15402	15402		
NVDLLSDMVQEHDEPILK	18	Unmodified	_NVDLLSDMVQEHDEPILK_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1048.02244	2094.03032	1.8263	0.001914	0.49397	0.00051769	2.3202	0.0024317	1048.52438112389	15.251	0.19504	15.251	15.207	15.402	0	126	85	1.23951419873743	0.0555583497907668	1.23951419873743	499.729289399184	0	22.399206632253						1143	23	6	NaN	NaN	NaN	2.9191E-14	1	33241	123.92	118.02	1	520130			15403	1269	12942	13321	15403	15403		
NVDMLSELVQEYDEPILK	18	Unmodified	_NVDMLSELVQEYDEPILK_			0	0	0	Q99733	Q99733	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.03247	2134.05039	1.3921	0.0014868	-0.77724	-0.00083012	0.61485	0.00065668	1068.53372732025	19.809	0.062071	19.809	19.782	19.845	0	135	64	1.23356193185193	0.0417059030387732	1.23356193185193	497.268097765678	0	16.8123014614721						404	8	5	NaN	NaN	NaN	1.201E-14	1	33800	178.03	145.27	1	105620			15404	2670	12943	13322	15404	15404		
NVEDFTGPR	9	Unmodified	_NVEDFTGPR_			0	0	0	P61009	P61009	P61009	SPCS3	Signal peptidase complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.748713	1033.48287	0.32952	0.00017061	0.37017	0.00019166	0.6997	0.00036227	517.74905846824	5.7179	0.14186	5.7179	5.6736	5.8155	0	741	34	0.827064408645228	0.0224421675628655	0.827064408645228	335.688257586086	0	9.1088094795104						218	17	3	NaN	NaN	NaN	0.0016542	1	5081	67.464	58.701	1	50384			15405	1320	12944	13323	15405	15405		
NVEELVIVLK	10	Unmodified	_NVEELVIVLK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.352814	1154.69108	0.14285	8.2616E-05	-1.1927	-0.00068978	-1.0498	-0.00060716	578.352094310319	14.666	0.12415	14.666	14.631	14.755	0	579	37	0.936845902828289	0.0243080216588687	0.936845902828289	379.721160624244	0	9.85249566542285						257	15	3	NaN	NaN	NaN	0.0087365	1	8204	57.888	46.528	1	84386			15406	1240	12945	13324	15406	15406		
NVEGQDMLYQSLK	13	Unmodified	_NVEGQDMLYQSLK_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.871773	1523.72899	2.3681	0.0018066	-0.43246	-0.00032991	1.9357	0.0014767	762.871634519722	10.773	0.20396	10.773	10.693	10.897	0	414	55	1.04781950764076	0.0361908186814239	1.04781950764076	423.484604283054	0	14.6268077815145						691	24	4	NaN	NaN	NaN	2.8289E-11	1	19229	153.25	136.6	1	223400			15407	1423;1587	12946	13325	15407	15407		
NVEGVEEVHELHVWQLAGSR	20	Unmodified	_NVEGVEEVHELHVWQLAGSR_			0	0	0	Q9Y6M5	Q9Y6M5	Q9Y6M5	SLC30A1	Zinc transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.385457	2287.13454	1.1351	0.00086653	0.46416	0.00035433	1.5993	0.0012209	763.720043385925	12.201	0.079828	12.201	12.165	12.245	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	607.762905926814	0	12.1841991801366						245	10	4	NaN	NaN	NaN	8.0371E-06	1	35538	84.071	78.236	1	64898			15408	3470	12947	13326	15408	15408		
NVEHGIIYIGK	11	Unmodified	_NVEHGIIYIGK_			0	0	0	Q8IYU8	Q8IYU8	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.845687	1241.67682	1.862	0.0011579	-0.62462	-0.00038842	1.2374	0.00076948	621.845470927376	7.3496	0.10639	7.3496	7.3142	7.4205	0	531	28	0.969216233931596	0.0181869004475753	0.969216233931596	392.516480988381	0	7.36539268931818						211	13	3	NaN	NaN	NaN	7.2735E-05	1	10679	85.821	64.733	1	50753			15409	2229	12948	13327	15409	15409		
NVESGEEELASK	12	Unmodified	_NVESGEEELASK_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.304246	1290.59394	2.547	0.0016462	-1.4468	-0.0009351	1.1002	0.00071106	646.30372636832	4.3879	0.28374	4.3879	4.3169	4.6007	0	567	34	0.944945209309785	0.0222653859126632	0.944945209309785	382.527579269856	0	9.01335240474032						447	33	3	NaN	NaN	NaN	0.0016837	1	12081	65.879	42.826	1	173520			15410	2551	12949	13328	15410	15410		
NVFDEAILAALEPPEPK	17	Unmodified	_NVFDEAILAALEPPEPK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.327887	1851.96183	-0.11786	-7.2875E-05	-1.575	-0.00097385	-1.6928	-0.0010467	618.327012341865	19.765	0.07983	19.765	19.712	19.791	0	639	16	0.896281965493857	0.0101543464632586	0.896281965493857	542.489170460883	0	6.14608259621764						53	10	2	NaN	NaN	NaN	0.035174	1	28546	22.395	22.395	1	10925			15411	1316	12950	13329	15411	15411		
NVFDEAILAALEPPEPK	17	Unmodified	_NVFDEAILAALEPPEPK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	618.327887	1851.96183	0.6824	0.00042195	-0.93773	-0.00057983	-0.25533	-0.00015788	618.32717803225	19.774	0.27491	19.774	19.561	19.836	0	588	46	0.93076847747433	0.0304039794505214	0.93076847747433	563.362687504843	0	18.4025007170059						592	32	4	NaN	NaN	NaN	0.00074175	1	28548	103.23	95.655	1	150450			15412	1316	12950	13329	15412	15412		
NVFDEAILAALEPPEPK	17	Unmodified	_NVFDEAILAALEPPEPK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.988192	1851.96183	1.9599	0.0018168	-1.5377	-0.0014254	0.42224	0.00039141	927.488522430961	19.774	0.28376	19.774	19.57	19.853	0	261	88	1.14997238118939	0.057903216089374	1.14997238118939	464.028143061087	0	23.3646670813324						1469	33	5	NaN	NaN	NaN	3.665E-10	1	28549	135.13	126.76	1	415970			15413	1316	12950	13329	15413	15413		
NVFDEAILAALEPPEPK	17	Unmodified	_NVFDEAILAALEPPEPK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.988192	1851.96183	0.9671	0.00089649	0.32046	0.00029706	1.2876	0.0011935	926.988257254882	19.774	0.133	19.774	19.676	19.809	0	108	67	1.25141139212444	0.0436410066968957	1.25141139212444	504.960037267891	0	17.6096881543184						521	16	4	NaN	NaN	NaN	4.817E-05	1	28550	110.14	99.166	1	92384			15414	1316	12950	13329	15414	15414		
NVFENPTMVQFDHR	14	Unmodified	_NVFENPTMVQFDHR_			0	0	0	Q7KZN9	Q7KZN9	Q7KZN9	COX15	Cytochrome c oxidase assembly protein COX15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.606989	1732.79914	-0.10886	-6.2987E-05	2.1414	0.001239	2.0326	0.0011761	578.608201919191	11.128	0.1064	11.128	11.092	11.199	0	663	28	0.880024865079826	0.018298122879973	0.880024865079826	532.921208764919	0	11.0808889047012						232	13	4	NaN	NaN	NaN	0.00075285	1	25398	64.266	54.751	1	56726			15415	2109	12951	13330	15415	15415		
NVFLLGFIPAK	11	Unmodified	_NVFLLGFIPAK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.865892	1217.71723	0.48969	0.00029865	-1.4777	-0.00090119	-0.98799	-0.00060254	609.864955460513	18.373	0.14186	18.373	18.328	18.47	0	564	70	0.946969335010767	0.0465613677067455	0.946969335010767	383.589824262665	0	18.8606602090834						537	17	4	NaN	NaN	NaN	0.0032466	1	9968	76.605	71.296	1	217560			15416	2442	12952	13331	15416	15416		
NVFVEFYAPWCGHCK	15	Unmodified	_NVFVEFYAPWCGHCK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.426724	1912.8389	1.59	0.0015223	0.9655	0.0009244	2.5555	0.0024467	957.929125312835	14.967	0.15962	14.967	14.87	15.03	0	192	55	1.1958073123591	0.035799450850682	1.1958073123591	482.408914104348	0	14.4421045363396						692	19	5	NaN	NaN	NaN	0.00013041	1	29892	68.548	66.838	1	155630			15417	554	12953	13332	15417	15417		
NVGCLQEALQLATSFAQLR	19	Unmodified	_NVGCLQEALQLATSFAQLR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.037001	2118.08917	0.65976	0.00046647	-0.95902	-0.00067806	-0.29926	-0.00021159	707.370939433679	20.093	0.044318	20.093	20.084	20.128	0	501	37	0.98941132619024	0.0242207100839708	0.98941132619024	598.298057581127	0	14.6462885686523						203	6	5	NaN	NaN	NaN	0.011311	1	33594	33.456	28.374	1	161630			15418	1136	12954	13333	15418	15418		
NVGFESDTGGAFK	13	Unmodified	_NVGFESDTGGAFK_			0	0	0	Q9UKX7	Q9UKX7	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.809499	1327.60444	1.3029	0.00086615	0.81769	0.00054361	2.1205	0.0014098	664.809303433193	8.2188	0.10648	8.2188	8.1745	8.281	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	389.782922601838	0	7.36422299986225						165	13	3	NaN	NaN	NaN	0.00047059	1	13200	60	44.121	1	52876			15419	3270	12955	13334	15419	15419		
NVGQFSGFPFEK	12	Unmodified	_NVGQFSGFPFEK_			0	0	0	P35659	P35659	P35659	DEK	Protein DEK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.832777	1355.651	1.5802	0.0010727	-0.97023	-0.00065862	0.60996	0.00041406	678.832265963358	13.549	0.27486	13.549	13.425	13.7	0	510	46	0.983355730988811	0.0302863591438532	0.983355730988811	397.874350152544	0	12.2541264398084						847	32	3	NaN	NaN	NaN	0.0032372	1	14058	69.276	51.806	1	308920			15420	979	12956	13335	15420	15420		
NVIDGDLCEQFNSMEPNK	18	Unmodified	_NVIDGDLCEQFNSMEPNK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.46443	2108.9143	2.2345	0.0023584	-0.18528	-0.00019556	2.0492	0.0021629	1055.96588523391	13.327	0.14192	13.327	13.265	13.407	0	207	52	1.18585551256002	0.0338361298430048	1.18585551256002	478.073733587859	0	13.6409240020209						669	17	5	NaN	NaN	NaN	3.6422E-19	1	33451	164.3	153.82	1	188340			15421	1841	12957	13336	15421	15421		
NVIDGDLCEQFNSMEPNK	18	Oxidation (M)	_NVIDGDLCEQFNSM(Oxidation (M))EPNK_	NVIDGDLCEQFNSM(1)EPNK	NVIDGDLCEQFNSM(120)EPNK	0	1	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.46189	2124.90922	1.6592	0.0017645	-0.47084	-0.00050072	1.1884	0.0012638	1063.96363399165	11.021	0.070935	11.021	10.986	11.057	0	210	28	1.18386433251387	0.0179230835476791	1.18386433251387	477.24749277039	0	7.22527611561765						167	9	3	NaN	NaN	NaN	5.5535E-07	1	33679	123.24	117.9	1	30238			15422	1841	12957	13337	15422	15422	577	
NVIFEISPTEEVGDFEVK	18	Unmodified	_NVIFEISPTEEVGDFEVK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.51223	2051.0099	1.1521	0.0011826	0.2212	0.00022707	1.3733	0.0014097	1027.01440144107	17.114	0.1596	17.114	17.06	17.22	0	201	79	1.18983705239708	0.0517316389304248	1.18983705239708	479.767462851464	0	20.8592908657506						908	19	5	NaN	NaN	NaN	0.00057636	1	32557	57.279	50.423	1	245200			15423	1095	12958	13338	15423	15423		
NVIIWGNHSSTQYPDVNHAK	20	Unmodified	_NVIIWGNHSSTQYPDVNHAK_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.710053	2279.10833	1.9586	0.0014899	0.4376	0.00033289	2.3962	0.0018228	761.044767169318	8.0947	0.20419	8.0947	8.0502	8.2544	0	519	46	0.97729762293174	0.030307312656189	0.97729762293174	590.701064967114	0	18.3184338549778						717	24	6	NaN	NaN	NaN	4.5547E-16	1	35457	173.26	154.87	1	434780			15424	1022	12959	13339	15424	15424		
NVIPALELVEPIK	13	Unmodified	_NVIPALELVEPIK_			0	0	0	P07602	P07602	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.93196	1433.84937	0.67779	0.0004866	-0.76541	-0.00054951	-0.087623	-6.2907E-05	717.931065214409	17.14	0.2394	17.14	17.007	17.246	0	471	46	1.00957851518677	0.0302236288211217	1.00957851518677	408.259384838857	0	12.2220113884123						629	28	3	NaN	NaN	NaN	0.0032225	1	16512	35.845	32.5	1	177110			15425	561	12960	13340	15425	15425		
NVIVLQTVLQEVR	13	Unmodified	_NVIVLQTVLQEVR_			0	0	0	Q9Y2L1	Q9Y2L1	Q9Y2L1	DIS3	Exosome complex exonuclease RRP44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.951215	1509.88788	0.92797	0.0007015	-0.41135	-0.00031096	0.51663	0.00039054	755.95099117244	17.335	0.16851	17.335	17.246	17.415	0	354	61	1.08796502040166	0.040117848274219	1.08796502040166	439.746019888205	0	16.2152861298369						501	20	4	NaN	NaN	NaN	9.7427E-08	1	18815	131.54	120.19	1	139290			15426	3343	12961	13341	15426	15426		
NVIVNGLVLASDGQK	15	Unmodified	_NVIVNGLVLASDGQK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.93048	1525.84641	1.6617	0.0012694	1.2768	0.00097535	2.9385	0.0022448	763.931056909327	12.644	0.079787	12.644	12.6	12.68	0	309	34	1.11800162319566	0.0220056189808042	1.11800162319566	451.843613535136	0	8.89363502884987						181	10	3	NaN	NaN	NaN	0.0020034	1	19301	52.863	44.39	1	49797			15427	1036	12962	13342	15427	15427		
NVLFSHLDDNER	12	Unmodified	_NVLFSHLDDNER_			0	0	0	P10644	P10644	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.852229	1457.68991	1.6627	0.0012135	3.2152	0.0023466	4.8779	0.0035601	729.854236522639	8.3697	0.18627	8.3697	8.2721	8.4584	0	438	34	1.03173026378327	0.0221334029246503	1.03173026378327	417.152020813855	0	8.94903840820615						274	22	4	NaN	NaN	NaN	0.013723	1	17181	45.939	23.936	1	62661			15428	633	12963	13343	15428	15428		
NVLGHMQQGGAPSPFDR	17	Unmodified	_NVLGHMQQGGAPSPFDR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.293293	1809.85805	-1.4939	-0.00090277	0.21261	0.00012848	-1.2813	-0.0007743	604.293342595878	8.7955	0.079924	8.7955	8.7599	8.8399	0	774	37	0.804600385996946	0.0245215525463975	0.804600385996946	487.081529093601	0	14.8446303505672						312	10	4	NaN	NaN	NaN	4.0864E-05	1	27472	95.656	90.268	1	94770			15429	1521	12964	13344	15429	15429		
NVLIEVNPQTR	11	Unmodified	_NVLIEVNPQTR_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.859326	1281.7041	1.4572	0.00093529	1.0906	0.00070001	2.5477	0.0016353	641.859855887436	8.8221	0.21306	8.8221	8.7511	8.9642	0	528	31	0.971237000454584	0.020206269780618	0.971237000454584	393.199745177126	0	8.18039276201438						292	25	2	NaN	NaN	NaN	3.494E-05	1	11822	133.76	112.48	1	100610			15430	2450	12965	13345	15430	15430		
NVLITDFFGSVR	12	Unmodified	_NVLITDFFGSVR_			0	0	0	Q92643	Q92643	Q92643	PIGK	GPI-anchor transamidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.369527	1366.7245	0.46887	0.00032088	-1.1691	-0.00080012	-0.70027	-0.00047924	684.368419640721	17.858	0.10638	17.858	17.814	17.92	0	528	46	0.971237000454584	0.0302989286426463	0.971237000454584	392.938868515927	0	12.2582096156899						308	13	3	NaN	NaN	NaN	0.003972	1	14405	45.939	39.563	1	81476			15431	2424	12966	13346	15431	15431		
NVLIVEDIIDTGK	13	Unmodified	_NVLIVEDIIDTGK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.900857	1427.78716	1.0559	0.00075488	-0.14133	-0.00010104	0.91459	0.00065384	714.900824112485	16.315	0.25716	16.315	16.227	16.484	0	426	88	1.03977710643793	0.0583034427822244	1.03977710643793	420.488326305474	0	23.5780504509579						983	30	4	NaN	NaN	NaN	2.6054E-05	1	16333	117.45	83.723	1	379350			15432	481	12967	13347	15432	15432		
NVLLDPQLVPGGGASEMAVAHALTEK	26	Unmodified	_NVLLDPQLVPGGGASEMAVAHALTEK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	873.126655	2616.35814	1.5957	0.0013933	-0.065301	-5.7016E-05	1.5304	0.0013362	873.460305717738	16.679	0.26601	16.679	16.59	16.856	0	249	103	1.15795408347545	0.067909901160663	1.15795408347545	699.347391408285	0	41.0142447833176						2130	31	6	NaN	NaN	NaN	7.5391E-14	1	37301	184.55	173.07	1	1168100			15433	1129	12968	13348	15433	15433		
NVLLDPQLVPGGGASEMAVAHALTEK	26	Oxidation (M)	_NVLLDPQLVPGGGASEM(Oxidation (M))AVAHALTEK_	NVLLDPQLVPGGGASEM(1)AVAHALTEK	NVLLDPQLVPGGGASEM(82)AVAHALTEK	0	1	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.458294	2632.35305	2.2184	0.0019488	0.73182	0.00064288	2.9503	0.0025917	878.793628253872	15.801	0.15075	15.801	15.721	15.872	0	216	82	1.17988115188462	0.0538358192818189	1.17988115188462	712.567378237417	0	32.5131463788823						1474	18	5	NaN	NaN	NaN	4.886E-06	1	37372	81.867	79.417	1	432930			15434	1129	12968	13349	15434	15434	407	
NVLLLGEDGAGK	12	Unmodified	_NVLLLGEDGAGK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.327328	1184.6401	0.95977	0.00056946	-1.764	-0.0010466	-0.80422	-0.00047716	593.325919325699	9.9307	0.11524	9.9307	9.913	10.028	0	576	34	0.938871150116794	0.0222777233789591	0.938871150116794	380.428468127788	0	9.02688316429544						174	14	3	NaN	NaN	NaN	0.0058009	1	9004	54.584	33.309	1	53741			15435	3465	12969	13350	15435	15435		
NVLLNNSEK	9	Unmodified	_NVLLNNSEK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.780013	1029.54547	1.6193	0.00083519	-1.3867	-0.00071522	0.23259	0.00011997	515.780335806666	4.2549	0.2483	4.2549	4.2194	4.4677	0	660	34	0.882057989648486	0.0223612701402726	0.882057989648486	358.027014353227	0	9.07643134512983						339	29	3	NaN	NaN	NaN	0.033974	1	4980	49.96	24.707	1	99954			15436	1581	12970	13351	15436	15436		
NVLLTGATGFLGK	13	Unmodified	_NVLLTGATGFLGK_			0	0	0	Q8WVX9	Q8WVX9	Q8WVX9	FAR1	Fatty acyl-CoA reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.874445	1289.73434	0.9611	0.00062075	-0.29682	-0.00019171	0.66428	0.00042904	645.874275408811	14.4	0.088687	14.4	14.356	14.444	0	531	40	0.969216233931596	0.0262663358758335	0.969216233931596	392.355607829258	0	10.6330701212103						201	11	3	NaN	NaN	NaN	0.0040817	1	12068	79.889	65.895	1	49952			15437	2383	12971	13352	15437	15437		
NVMLLPVGSADDGAHSQNEK	20	Unmodified	_NVMLLPVGSADDGAHSQNEK_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.668866	2080.98477	1.0505	0.00072974	0.30703	0.00021328	1.3575	0.00094302	695.003503284848	9.6115	0.079777	9.6115	9.5849	9.6647	0	576	43	0.938871150116794	0.0283515051757137	0.938871150116794	567.802231095188	0	17.1461737765341						315	10	4	NaN	NaN	NaN	8.4898E-06	1	33042	74.62	62.45	1	73019			15438	2577	12972	13353	15438	15438		
NVMSAFGLTDDQVSGPPSAPAEDR	24	Unmodified	_NVMSAFGLTDDQVSGPPSAPAEDR_			0	0	0	Q92734	Q92734	Q92734	TFG	Protein TFG	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1231.06864	2460.12272	0.68725	0.00084606	-0.96746	-0.001191	-0.2802	-0.00034495	1231.5672746832	14.382	0.053194	14.382	14.365	14.418	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.196535824257	0	9.56399364696887						136	7	4	NaN	NaN	NaN	0.00016818	1	36624	70.337	67.622	1	18029			15439	2429	12973	13354	15439	15439		
NVNIQNFHISWK	12	Unmodified	_NVNIQNFHISWK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.596642	1498.7681	-1.7131	-0.00085756	0.056203	2.8135E-05	-1.6569	-0.00082943	500.596952096971	12.706	0.10644	12.706	12.662	12.768	0	783	28	0.798467866007927	0.0184001219300317	0.798467866007927	484.130320495182	0	11.1564376055281						277	13	4	NaN	NaN	NaN	0.001467	1	18498	43.168	38.018	1	87749			15440	671	12974	13355	15440	15440		
NVNNEVHFFENNNFNTIANK	20	Unmodified	_NVNNEVHFFENNNFNTIANK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	793.7086	2378.10397	0.80317	0.00063749	0.47456	0.00037666	1.2777	0.0010141	794.043415946767	12.254	0.079826	12.254	12.227	12.307	0	573	28	0.940896116921038	0.0182247029861181	0.940896116921038	568.555787836764	0	11.0126507889851						243	10	5	NaN	NaN	NaN	1.1326E-11	1	36247	134.49	118.39	1	60005			15441	2796	12975	13356	15441	15441		
NVNQEVVDFEK	11	Unmodified	_NVNQEVVDFEK_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.825149	1319.63574	1.4266	0.00094271	-1.7807	-0.0011767	-0.35415	-0.00023403	660.823962976521	8.3076	0.28388	8.3076	8.2454	8.5293	0	561	58	0.948993180460448	0.0384371124263597	0.948993180460448	384.076714603301	0	15.5562760233863						691	33	4	NaN	NaN	NaN	9.1046E-06	1	12955	113.46	84.358	1	243980			15442	2748	12976	13357	15442	15442		
NVNVQNFHISWK	12	Unmodified	_NVNVQNFHISWK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.924759	1484.75245	-1.8487	-0.00091684	-0.73548	-0.00036474	-2.5842	-0.0012816	495.924434109269	11.527	0.16855	11.527	11.474	11.642	0	780	34	0.800512323802183	0.0224890390033184	0.800512323802183	485.411791122799	0	13.6368227929104						385	20	4	NaN	NaN	NaN	0.0011872	1	18055	79.311	58.222	1	165420			15443	221	12977	13358	15443	15443		
NVPHEDICEDSDIDGDYR	18	Unmodified	_NVPHEDICEDSDIDGDYR_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.94237	2147.87019	2.3161	0.0024897	-0.66742	-0.00071744	1.6487	0.0017723	1074.94212268953	7.3319	0.062066	7.3319	7.3053	7.3674	0	183	13	1.20177511391933	0.00795543063720427	1.20177511391933	484.434177879426	0	3.20682501723826						50	8	2	NaN	NaN	NaN	0.0031879	1	33986	32.61	25.404	1	9737.3			15444	96	12978	13359	15444	15444		
NVPHEDICEDSDIDGDYR	18	Unmodified	_NVPHEDICEDSDIDGDYR_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.964007	2147.87019	1.7106	0.0012265	0.48575	0.00034826	2.1964	0.0015747	717.298811441848	7.3319	0.15073	7.3319	7.2875	7.4383	0	585	25	0.932794566565362	0.0162075912580637	0.932794566565362	564.010936105587	0	9.79986274055625						322	18	4	NaN	NaN	NaN	4.9707E-05	1	33987	52.201	51.766	1	81565			15445	96	12978	13359	15445	15445		
NVPLPEFPEHPFQEEHLK	18	Unmodified	_NVPLPEFPEHPFQEEHLK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.700494	2186.07965	0.62376	0.00045516	0.53738	0.00039213	1.1611	0.00084729	730.035256461296	12.298	0.15964	12.298	12.21	12.369	0	579	82	0.936845902828289	0.0546363095798417	0.936845902828289	566.397000245971	0	33.0319444821275						602	19	3	NaN	NaN	NaN	0.0011726	1	34533	50.641	47.926	1	117710			15446	702	12979	13360	15446	15446		
NVPNLHVMK	9	Unmodified	_NVPNLHVMK_			0	0	0	P46783;Q9NQ39	P46783	P46783	RPS10;RPS10P5	40S ribosomal protein S10;Putative 40S ribosomal protein S10-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.289494	1050.56443	1.893	0.00099625	0.39463	0.00020769	2.2876	0.0012039	526.290150571503	5.7091	0.39018	5.7091	5.5583	5.9485	0	639	46	0.896281965493857	0.0304672723906905	0.896281965493857	363.704465807404	0	12.3633894868776						1001	45	5	NaN	NaN	NaN	0.0074365	1	5491	56.014	34.086	1	965120			15447	1091	12980	13361	15447	15447		
NVPQEESLEDSDVDADFK	18	Unmodified	_NVPQEESLEDSDVDADFK_			0	0	0	O00505	O00505	O00505	KPNA3	Importin subunit alpha-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.95019	2035.88582	2.0253	0.0020637	0.15738	0.00016036	2.1827	0.0022241	1019.45249172869	10.489	0.079852	10.489	10.454	10.534	0	234	28	1.16792504164217	0.0179427933549365	1.16792504164217	470.955599718695	0	7.23527512794925						161	10	3	NaN	NaN	NaN	0.0028731	1	32253	36.053	32.413	1	25287			15448	87	12981	13362	15448	15448		
NVPQVVNVQELK	12	Unmodified	_NVPQVVNVQELK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.888084	1365.76161	1.3335	0.00091199	-0.26937	-0.00018422	1.0642	0.00072777	683.887882229035	10.365	0.079779	10.365	10.321	10.401	0	480	22	1.00353128488872	0.0141141050876044	1.00353128488872	406.007213085622	0	5.71026390318394						124	10	3	NaN	NaN	NaN	0.0013708	1	14374	64.906	59.41	1	29559			15449	978	12982	13363	15449	15449		
NVQAEEMVEFSSGLK	15	Unmodified	_NVQAEEMVEFSSGLK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.400895	1666.78724	2.9363	0.0024501	-0.12199	-0.00010179	2.8143	0.0023483	834.400869985172	12.671	0.38133	12.671	12.626	13.008	0	294	46	1.12800004657306	0.0299828961966486	1.12800004657306	455.537763622957	0	12.1084582592488						1322	44	5	NaN	NaN	NaN	7.1744E-07	1	23530	98.167	86.811	1	390850			15450	840	12983	13364	15450	15450		
NVQAEEMVEFSSGLK	15	Oxidation (M)	_NVQAEEM(Oxidation (M))VEFSSGLK_	NVQAEEM(1)VEFSSGLK	NVQAEEM(48)VEFSSGLK	0	1	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.398352	1682.78215	1.9778	0.0016661	-1.2138	-0.0010225	0.76395	0.00064355	843.400494799614	9.31	0.28379	9.31	9.1947	9.4785	0	372	154	1.07593298845566	0.102096612407513	1.07593298845566	434.476666587979	0	41.2280284224867						1439	33	4	NaN	NaN	NaN	0.0027336	1	23981	47.915	44.179	1	246440			15451	840	12983	13365	15451	15451	283	
NVQGIIEILK	10	Unmodified	_NVQGIIEILK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.845156	1125.67576	0.68164	0.00038434	-1.9777	-0.0011151	-1.296	-0.00073075	563.844176533163	14.568	0.2128	14.568	14.515	14.728	0	633	91	0.900343422309015	0.0608881334874144	0.900343422309015	365.037019670513	0	24.6866053894684						1348	25	5	NaN	NaN	NaN	0.0068946	1	7420	64.064	55.882	1	488040			15452	1055	12984	13366	15452	15452		
NVQLQENEIR	10	Unmodified	_NVQLQENEIR_			0	0	0	P36873	P36873	P36873	PPP1CC	Serine/threonine-protein phosphatase PP1-gamma catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.825483	1241.63641	1.6158	0.0010047	-1.2601	-0.00078358	0.35565	0.00022115	621.824902111577	5.9307	0.14193	5.9307	5.8864	6.0283	0	600	46	0.922661313351899	0.0303997669355048	0.922661313351899	373.662647531067	0	12.3114053153281						336	17	3	NaN	NaN	NaN	0.00051112	1	10669	102.55	81.271	1	128360			15453	992	12985	13367	15453	15453		
NVQLSLLTER	10	Unmodified	_NVQLSLLTER_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.83532	1171.65609	0.42033	0.00024666	-0.2097	-0.00012306	0.21063	0.0001236	586.835814595408	11.669	0.14187	11.669	11.633	11.775	0	585	43	0.932794566565362	0.0283554323651288	0.932794566565362	378.014456682065	0	11.4910225077283						261	17	4	NaN	NaN	NaN	0.045366	1	8656	32.549	26.285	1	74746			15454	1157	12986	13368	15454	15454		
NVSCEVDMFK	10	Unmodified	_NVSCEVDMFK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.770474	1227.52639	1.0895	0.0006698	-0.4674	-0.00028734	0.62211	0.00038245	614.769796556755	9.1858	0.10642	9.1858	9.1326	9.2391	0	585	34	0.932794566565362	0.022280809347793	0.932794566565362	377.814191797946	0	9.02450151198497						243	13	3	NaN	NaN	NaN	0.033796	1	10212	37.591	35.792	1	56242			15455	2345	12987	13369	15455	15455		
NVSDYTPLSLAASGGYVNIIK	21	Unmodified	_NVSDYTPLSLAASGGYVNIIK_			0	0	0	Q8IWZ3;O75179	Q8IWZ3;O75179	Q8IWZ3	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.57315	2181.13175	0.15446	0.0001686	0.042458	4.6346E-05	0.19692	0.00021495	1092.07482163915	17.787	0.079793	17.787	17.761	17.841	0	75	40	1.27319752866042	0.0257331529493232	1.27319752866042	513.174178888355	0	10.3719881147363						224	10	3	NaN	NaN	NaN	8.2992E-06	1	34468	53.773	52.962	1	41799			15456	2207;311	12988	13370	15456	15456		
NVSEELDRTPPEVSK	15	Unmodified	_NVSEELDRTPPEVSK_			0	0	1	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.288091	1698.84244	-0.68841	-0.00039052	0.7463	0.00042337	0.057891	3.2841E-05	567.288407544617	6.3565	0.1596	6.3565	6.3121	6.4717	0	771	46	0.806643990516186	0.0306370230473841	0.806643990516186	488.560970054266	0	18.5559600958863						425	19	4	NaN	NaN	NaN	0.0054955	1	24465	49.097	46.425	1	96189			15457	1841	12989	13371	15457	15457		
NVSGISFTENMGSSQQK	17	Unmodified	_NVSGISFTENMGSSQQK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.42289	1812.83123	1.4311	0.0012986	3.7364	0.0033905	5.1675	0.0046891	907.425991527683	9.3721	0.12413	9.3721	9.3366	9.4608	0	279	43	1.13799159301878	0.0279667154484231	1.13799159301878	459.267409055707	0	11.2867274438498						226	15	3	NaN	NaN	NaN	3.6263E-14	1	27545	166.65	145.29	1	38677			15458	1151	12990	13372	15458	15458		
NVSSFPDDATSPLQENR	17	Unmodified	_NVSSFPDDATSPLQENR_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.937219	1875.85988	3.1516	0.0029592	-1.7812	-0.0016724	1.3704	0.0012868	939.437221182957	9.8332	0.33692	9.8332	9.7002	10.037	0	339	79	1.09798411722691	0.0520312204017357	1.09798411722691	443.008268295842	0	20.9932552628433						1397	39	4	NaN	NaN	NaN	1.0867E-14	1	29049	120.75	113.54	1	330270			15459	1207	12991	13373	15459	15459		
NVTDVVNTCHDAGISK	16	Unmodified	_NVTDVVNTCHDAGISK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.412325	1728.8101	2.9038	0.002513	-1.0703	-0.00092624	1.8335	0.0015867	865.411527924568	6.3387	0.15959	6.3387	6.3033	6.4629	0	282	46	1.13599383354359	0.0299746464296646	1.13599383354359	458.630298475203	0	12.1015454774458						593	19	5	NaN	NaN	NaN	1.462E-33	1	25293	258.79	244.99	1	312020			15460	3395	12992	13374	15460	15460		
NVTDVVNTCHDAGISK	16	Unmodified	_NVTDVVNTCHDAGISK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.277309	1728.8101	-0.028036	-1.6184E-05	1.9007	0.0010972	1.8727	0.001081	577.278600269397	6.3387	0.097541	6.3387	6.3033	6.4008	0	687	40	0.863749705078866	0.0264599929662752	0.863749705078866	523.074944310741	0	16.0238078993419						266	12	4	NaN	NaN	NaN	5.9675E-05	1	25294	88.42	78.399	1	76579			15461	3395	12992	13374	15461	15461		
NVTELNEPLSNEER	14	Unmodified	_NVTELNEPLSNEER_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.397198	1642.77984	3.5502	0.0029197	-1.3036	-0.0010721	2.2466	0.0018476	822.397146242299	7.7398	0.35476	7.7398	7.6245	7.9793	0	402	187	1.05585747106793	0.124743849496781	1.05585747106793	426.454684349518	0	50.383314433422						2221	41	5	NaN	NaN	NaN	1.5393E-34	1	22831	244.71	213.79	1	2227900			15462	1361	12993	13375	15462	15462		
NVTICPNPEDTCDFAR	16	Unmodified	_NVTICPNPEDTCDFAR_			0	0	0	O60566	O60566	O60566	BUB1B	Mitotic checkpoint serine/threonine-protein kinase BUB1 beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.914375	1907.8142	2.4141	0.0023053	0.45775	0.00043712	2.8719	0.0027424	954.914178880552	10.099	0.088666	10.099	10.055	10.143	0	267	25	1.14597988355104	0.0159743847562432	1.14597988355104	462.316456166394	0	6.44445950225611						162	11	3	NaN	NaN	NaN	0.018315	1	29764	40.224	35.67	1	26700			15463	267	12994	13376	15463	15463		
NVTLCGHLHHGK	12	Unmodified	_NVTLCGHLHHGK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.234939	1371.68299	0.24248	0.00011111	0.40133	0.0001839	0.64381	0.00029501	458.235211566324	2.3483	0.10639	2.3483	2.3306	2.437	0	870	16	0.739054571787983	0.0102636690167384	0.739054571787983	448.485731616586	0	6.22837512107679						84	13	2	NaN	NaN	NaN	0.047532	1	14533	15.879	10.013	1	16431			15464	1796	12995	13377	15464	15464		
NVTLNPDPNEIK	12	Unmodified	_NVTLNPDPNEIK_			0	0	0	Q13907	Q13907	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.354074	1352.69359	1.9191	0.0012999	0.82875	0.00056136	2.7479	0.0018613	677.857579918811	8.068	0.27505	8.068	7.9527	8.2277	0	504	79	0.987393073566096	0.0524564762308631	0.987393073566096	399.516702830884	0	21.2248181468312						1045	32	5	NaN	NaN	NaN	0.0076537	1	13972	56.202	50.336	1	385920			15465	1710	12996	13378	15465	15465		
NVVAECLGK	9	Unmodified	_NVVAECLGK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.257859	988.501166	0.16001	7.9244E-05	7.33	0.0036302	7.49	0.0037095	495.261789327023	5.3455	0.21283	5.3455	5.2479	5.4608	0	696	31	0.857641857947968	0.0203665630059481	0.857641857947968	348.307108707177	0	8.27130650068466						220	25	2	NaN	NaN	NaN	0.054965	1	4020	34.781	26.598	1	88789			15466	2175	12997	13379	15466	15466		
NVVALDTEVASNR	13	Unmodified	_NVVALDTEVASNR_			0	0	0	P01130	P01130	P01130	LDLR	Low-density lipoprotein receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.36243	1386.71031	2.0389	0.0014157	-1.9399	-0.001347	0.098967	6.8719E-05	694.862980708697	8.0591	0.23067	8.0591	8.0059	8.2366	0	438	94	1.03173026378327	0.062470851394252	1.03173026378327	417.352729947556	0	25.2705394876504						606	27	4	NaN	NaN	NaN	0.0011303	1	15047	83.775	79.882	1	259940			15467	491	12998	13380	15467	15467		
NVVHQLSVTLEDLYNGATR	19	Unmodified	_NVVHQLSVTLEDLYNGATR_			0	0	0	P31689	P31689	P31689	DNAJA1	DnaJ homolog subfamily A member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.371037	2128.09128	-0.036047	-2.5607E-05	-1.3544	-0.00096212	-1.3904	-0.00098772	710.704732144152	18.47	0.088747	18.47	18.426	18.515	0	618	25	0.910492137470517	0.0162323175227004	0.910492137470517	550.558701928553	0	9.81539905376655						198	11	4	NaN	NaN	NaN	2.3699E-05	1	33714	103.23	95.583	1	46509			15468	926	12999	13381	15468	15468		
NVVHQLSVTLEDLYNGATR	19	Unmodified	_NVVHQLSVTLEDLYNGATR_			0	0	0	P31689	P31689	P31689	DNAJA1	DnaJ homolog subfamily A member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.371037	2128.09128	0.45722	0.00032479	-0.80046	-0.00056862	-0.34324	-0.00024383	710.371373962282	18.47	0.079889	18.47	18.435	18.515	0	507	22	0.985374541851584	0.0141297228120989	0.985374541851584	595.838782565381	0	8.54399670457008						151	10	4	NaN	NaN	NaN	0.029987	1	33715	34.338	31.253	1	32067			15469	926	12999	13381	15469	15469		
NVVLQTLEGHLR	12	Unmodified	_NVVLQTLEGHLR_			0	0	0	Q14254	Q14254	Q14254	FLOT2	Flotillin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.264892	1377.77285	-2.3099	-0.0010632	0.6381	0.00029369	-1.6718	-0.00076948	460.26512385512	12.263	0.10643	12.263	12.219	12.325	0	780	22	0.800512323802183	0.0143092140004129	0.800512323802183	485.759180296519	0	8.68297945809718						163	13	3	NaN	NaN	NaN	0.00036622	1	14745	61.48	51.392	1	44723			15470	1743	13000	13382	15470	15470		
NVVLQTLEGHLR	12	Unmodified	_NVVLQTLEGHLR_			0	0	0	Q14254	Q14254	Q14254	FLOT2	Flotillin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.8937	1377.77285	1.1872	0.00081906	-0.1662	-0.00011466	1.021	0.0007044	689.893633489458	12.254	0.10643	12.254	12.219	12.325	0	435	28	1.03374239103424	0.0181066471151929	1.03374239103424	418.193441218351	0	7.32492072657783						216	13	4	NaN	NaN	NaN	0.0037206	1	14746	76.85	66.063	1	73163			15471	1743	13000	13382	15471	15471		
NVYLFPGIPELLR	13	Unmodified	_NVYLFPGIPELLR_			0	0	0	Q8NFF5	Q8NFF5	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.937576	1529.8606	0.9743	0.00074625	-0.89325	-0.00068417	0.08105	6.2079E-05	766.437907811667	19.649	0.062075	19.649	19.623	19.685	0	408	40	1.0518390438467	0.026117980429907	1.0518390438467	425.093794100178	0	10.5554090810129						153	8	3	NaN	NaN	NaN	0.006013	1	19443	29.317	25.334	1	29314			15472	2316	13001	13383	15472	15472		
NVYLFPGIPELLR	13	Unmodified	_NVYLFPGIPELLR_			0	0	0	Q8NFF5	Q8NFF5	Q8NFF5	FLAD1	FAD synthase;Molybdenum cofactor biosynthesis protein-like region;FAD synthase region	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.937576	1529.8606	0.91805	0.00070317	0.23961	0.00018352	1.1577	0.00088669	765.937112261043	19.649	0.062091	19.649	19.614	19.676	0	363	28	1.08195024817156	0.0180567582356488	1.08195024817156	437.263033764496	0	7.29751936321924						83	8	2	NaN	NaN	NaN	0.03281	1	19444	19.557	18.407	1	16080			15473	2316	13001	13383	15473	15473		
NWDDVLTVDYTR	12	Unmodified	_NWDDVLTVDYTR_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.854438	1495.69432	1.0565	0.00079113	0.41769	0.00031279	1.4741	0.0011039	748.854466823679	14.471	0.11528	14.471	14.418	14.533	0	444	34	1.02770517576159	0.022139515615524	1.02770517576159	415.425315122178	0	8.94937134515811						174	14	3	NaN	NaN	NaN	0.0045044	1	18407	58.476	55.598	1	37986			15474	1621	13002	13384	15474	15474		
NWNEVVTQQYLFDR	14	Unmodified	_NWNEVVTQQYLFDR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.4392	1810.86385	0.63611	0.00057659	2.4271	0.0022	3.0632	0.0027766	906.440998207268	14.843	0.097537	14.843	14.781	14.879	0	261	55	1.14997238118939	0.0359572110198465	1.14997238118939	464.106414094018	0	14.5116287488426						223	12	3	NaN	NaN	NaN	0.0026621	1	27493	66.619	63.331	1	77192			15475	240	13003	13385	15475	15475		
NWQYQETIK	9	Unmodified	_NWQYQETIK_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.29857	1208.58259	1.325	0.00080205	-0.14596	-8.8347E-05	1.1791	0.0007137	605.299195145428	7.2698	0.22169	7.2698	7.1634	7.3851	0	594	52	0.926715457081489	0.0344578460236871	0.926715457081489	375.417355042452	0	13.9590564890461						553	26	4	NaN	NaN	NaN	9.8364E-05	1	9693	125.5	116.73	1	195600			15476	1790	13004	13386	15476	15476		
NWSEDDLQLLIK	12	Unmodified	_NWSEDDLQLLIK_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.382831	1472.75111	0.71609	0.00052803	3.1872	0.0023502	3.9033	0.0028782	737.385333856161	16.209	0.11526	16.209	16.156	16.271	0	432	34	1.035754240522	0.0221272927649854	1.035754240522	418.738738623965	0	8.94570767762775						161	14	2	NaN	NaN	NaN	0.037216	1	17671	23.836	20.228	1	64904			15477	2649	13005	13387	15477	15477		
NWVDGVFHDPILR	13	Unmodified	_NWVDGVFHDPILR_			0	0	0	P78413	P78413	P78413	IRX4	Iroquois-class homeodomain protein IRX-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.272047	1566.79431	-0.91085	-0.00047662	0.22019	0.00011522	-0.69066	-0.0003614	523.272236078546	15.163	0.070953	15.163	15.118	15.189	0	720	31	0.841341816837976	0.0203807147323261	0.841341816837976	509.923392347733	0	12.3524149005665						150	9	3	NaN	NaN	NaN	0.0034303	1	20557	30.349	26.741	1	30816			15478	1463	13006	13388	15478	15478		
NWYSDADMPASAR	13	Unmodified	_NWYSDADMPASAR_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.317165	1482.61978	1.4256	0.0010583	0.93184	0.00069172	2.3575	0.00175	742.317789369666	9.2213	0.21286	9.2213	9.1504	9.3632	0	480	43	1.00353128488872	0.0282262646321653	1.00353128488872	405.686388953773	0	11.4107168801883						725	25	4	NaN	NaN	NaN	0.00028251	1	17978	108.2	93.433	1	324310			15479	613	13007	13389	15479	15479		
NYAEYQVCLAAVGLVGDLCR	20	Unmodified	_NYAEYQVCLAAVGLVGDLCR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.701401	2270.08237	0.40361	0.00030582	0.79818	0.00060478	1.2018	0.0009106	758.370247474386	18.896	0.088633	18.896	18.86	18.949	0	426	22	1.03977710643793	0.0140810032793992	1.03977710643793	628.480224560189	0	8.51108573969918						138	11	4	NaN	NaN	NaN	0.031351	1	35365	29.408	24.02	1	21491			15480	1780	13008	13390	15480	15480		
NYAHALDGLYR	11	Unmodified	_NYAHALDGLYR_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	431.550921	1291.63093	-2.0883	-0.00090122	-0.23158	-9.994E-05	-2.3199	-0.0010012	431.550756549533	8.5116	0.05322	8.5116	8.485	8.5382	0	831	16	0.76571780291124	0.0102465159431113	0.76571780291124	464.952780520275	0	6.22180398611835						59	7	2	NaN	NaN	NaN	0.056873	1	12121	15.879	14.235	1	13855			15481	3194	13009	13391	15481	15481		
NYAHALDGLYR	11	Unmodified	_NYAHALDGLYR_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.822744	1291.63093	1.2208	0.00078964	4.6904	0.0030339	5.9112	0.0038235	646.826189449004	8.5116	0.097546	8.5116	8.4672	8.5648	0	510	25	0.983355730988811	0.0161516048852366	0.983355730988811	398.07330736941	0	6.53834881251453						144	12	3	NaN	NaN	NaN	0.013276	1	12127	33.723	27.46	1	33139			15482	3194	13009	13391	15482	15482		
NYAQVFNK	8	Unmodified	_NYAQVFNK_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.250892	982.48723	0.19768	9.7311E-05	-1.4054	-0.0006918	-1.2077	-0.00059449	492.249933507644	6.0017	0.088732	6.0017	5.9573	6.0461	0	735	28	0.831145085810763	0.0183592202134729	0.831145085810763	337.574585191433	0	7.45670792477307						126	11	2	NaN	NaN	NaN	0.011929	1	3891	69.093	62.863	1	37586			15483	3463	13010	13392	15483	15483		
NYDIGAALDTIQYSK	15	Unmodified	_NYDIGAALDTIQYSK_			0	0	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.414859	1670.81517	2.5292	0.0021155	1.8462	0.0015442	4.3754	0.0036597	836.41581907098	14.365	0.2128	14.365	14.302	14.515	0	312	73	1.11600111266355	0.0480486576180861	1.11600111266355	450.683082537645	0	19.4038490476338						884	25	5	NaN	NaN	NaN	4.7968E-17	1	23645	196.42	188.42	1	563120			15484	1673	13011	13393	15484	15484		
NYDLSFLK	8	Unmodified	_NYDLSFLK_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.260925	998.507297	0.59177	0.00029604	1.608	0.0008044	2.1997	0.0011004	500.260510640676	12.866	0.14189	12.866	12.804	12.946	0	684	43	0.86578508874114	0.0284894438301995	0.86578508874114	351.565919162586	0	11.5685955288952						250	17	3	NaN	NaN	NaN	0.046389	1	4250	45.489	36.726	1	56712			15485	483	13012	13394	15485	15485		
NYDPALHPFEVPR	13	Unmodified	_NYDPALHPFEVPR_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.928169	1553.76268	0.94436	0.00049005	1.0265	0.00053266	1.9708	0.0010227	519.26318088642	10.374	0.1064	10.374	10.339	10.445	0	645	58	0.892219381832517	0.0386186640056191	0.892219381832517	540.79912040192	0	23.4078523181605						339	13	4	NaN	NaN	NaN	0.001315	1	20173	61.577	53.576	1	91023			15486	3059	13013	13395	15486	15486		
NYEDEDSLK	9	Unmodified	_NYEDEDSLK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.740751	1111.46695	1.9852	0.0011052	0.59191	0.00032954	2.5771	0.0014348	556.741079432187	3.9977	0.20396	3.9977	3.9622	4.1662	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	366.739941652314	0	9.8775294626094						357	24	3	NaN	NaN	NaN	0.0032423	1	7018	72.038	63.275	1	105110			15487	652	13014	13396	15487	15487		
NYEEIAK	7	Unmodified	_NYEEIAK_			0	0	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.71635	865.418148	-0.37921	-0.00016447	2.5312	0.0010978	2.152	0.00093337	433.71758210786	3.4834	0.16858	3.4834	3.4479	3.6164	0	732	31	0.833184998970724	0.0203977162825675	0.833184998970724	339.034292874001	0	8.30010780876739						218	20	2	NaN	NaN	NaN	0.052664	1	1784	53.679	40.127	1	47176			15488	1146	13015	13397	15488	15488		
NYELLCGDNTR	11	Unmodified	_NYELLCGDNTR_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.806433	1353.59831	2.0292	0.0013754	2.5296	0.0017146	4.5588	0.00309	677.807122677928	7.7753	0.18626	7.7753	7.7132	7.8995	0	510	40	0.983355730988811	0.026248176167575	0.983355730988811	397.880425861052	0	10.6204043791245						390	22	3	NaN	NaN	NaN	0.00092013	1	13997	60.547	52.901	1	109130		+	15489	37	13016	13398	15489	15489		
NYELMESEK	9	Unmodified	_NYELMESEK_			0	0	0	O94905	O94905	O94905	ERLIN2	Erlin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.755346	1141.49614	1.2658	0.00072374	1.8145	0.0010375	3.0803	0.0017612	571.755678801063	5.9929	0.14194	5.9929	5.9573	6.0993	0	645	28	0.892219381832517	0.0182828962008553	0.892219381832517	361.682516045137	0	7.41141027998731						166	17	2	NaN	NaN	NaN	0.050117	1	7823	30.593	19.233	1	37197			15490	395	13017	13399	15490	15490		
NYFESTDGLIWVVDSADR	18	Unmodified	_NYFESTDGLIWVVDSADR_			0	0	0	P36404	P36404	P36404	ARL2	ADP-ribosylation factor-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.98945	2085.96435	1.0536	0.0010999	-0.99589	-0.0010397	0.057676	6.0213E-05	1044.49011501083	18.293	0.062052	18.293	18.266	18.328	0	186	43	1.1997861197946	0.0278401917044975	1.1997861197946	483.724627679636	0	11.2244892190395						258	8	4	NaN	NaN	NaN	0.0021089	1	33116	63.947	61.399	1	43686			15491	982	13018	13400	15491	15491		
NYGENPEAYNEELK	14	Unmodified	_NYGENPEAYNEELK_			0	0	0	Q9H3S7	Q9H3S7	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.370649	1668.72674	2.3594	0.001971	-0.87698	-0.0007326	1.4824	0.0012384	835.369337410389	7.2343	0.08866	7.2343	7.1989	7.2875	0	390	25	1.06389100039157	0.0160626282117899	1.06389100039157	429.64349814017	0	6.48675829732406						149	11	3	NaN	NaN	NaN	0.0001805	1	23587	81.48	74.733	1	27363			15492	2885	13019	13401	15492	15492		
NYGFVHIEDK	10	Unmodified	_NYGFVHIEDK_			0	0	0	Q9BWF3;Q9BQ04	Q9BWF3	Q9BWF3	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.29857	1220.58259	1.5959	0.00097559	1.1312	0.00069151	2.7271	0.0016671	611.299391297351	7.2964	0.17735	7.2964	7.2521	7.4294	0	546	34	0.959108205975751	0.0222468989208282	0.959108205975751	388.496696223616	0	9.01133644578687						379	21	4	NaN	NaN	NaN	4.965E-05	1	10028	87.895	75.068	1	135600			15493	2778	13020	13402	15493	15493		
NYGILADATEQVGQHK	16	Unmodified	_NYGILADATEQVGQHK_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.960197	1742.85876	1.0178	0.00059233	-1.6849	-0.00098053	-0.66705	-0.0003882	582.292787489705	9.78	0.27489	9.78	9.6292	9.9041	0	636	55	0.898312834727904	0.0365683394174512	0.898312834727904	543.971074126318	0	22.1438658147993						576	32	4	NaN	NaN	NaN	1.0469E-08	1	25680	124.46	109.48	1	160320			15494	2816	13021	13403	15494	15494		
NYGILADATEQVGQHK	16	Unmodified	_NYGILADATEQVGQHK_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.436658	1742.85876	3.0052	0.0026218	-0.59785	-0.00052158	2.4073	0.0021002	872.435915413478	9.7622	0.2128	9.7622	9.647	9.8598	0	198	73	1.1918274123006	0.0478047656707101	1.1918274123006	481.140913778846	0	19.2987914192964						643	25	5	NaN	NaN	NaN	5.6285E-35	1	25683	244.71	214.36	1	405580			15495	2816	13021	13403	15495	15495		
NYGVTFPIFHK	11	Unmodified	_NYGVTFPIFHK_			0	0	0	Q8TED1	Q8TED1	Q8TED1	GPX8	Probable glutathione peroxidase 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.567912	1321.68191	-3.1853	-0.0014065	1.0838	0.00047858	-2.1014	-0.00092793	441.56828694295	12.635	0.079787	12.635	12.6	12.68	-1.7764E-15	792	16	0.792332785124922	0.0102265583161567	0.792332785124922	480.99811022319	0	6.20819347186682						112	10	3	NaN	NaN	NaN	0.056659	1	13037	12.596	8.988	1	23683			15496	2353	13022	13404	15496	15496		
NYGVTFPIFHK	11	Unmodified	_NYGVTFPIFHK_			0	0	0	Q8TED1	Q8TED1	Q8TED1	GPX8	Probable glutathione peroxidase 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.84823	1321.68191	0.80442	0.00053241	0.15716	0.00010402	0.96159	0.00063642	661.848059233535	12.653	0.14187	12.653	12.564	12.706	0	501	34	0.98941132619024	0.0222007820488888	0.98941132619024	400.428322902876	0	8.98496074145351						277	17	3	NaN	NaN	NaN	0.0052847	1	13038	58.916	38.682	1	100400			15497	2353	13022	13404	15497	15497		
NYILDQTNVYGSAQR	15	Unmodified	_NYILDQTNVYGSAQR_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.428832	1740.84311	2.6839	0.0023388	-2.0145	-0.0017555	0.66945	0.00058338	871.427396164804	10.073	0.11527	10.073	10.037	10.152	0	348	49	1.09197348738011	0.0320677454165734	1.09197348738011	440.833901411888	0	12.9458722989584						319	14	3	NaN	NaN	NaN	0.00022878	1	25625	67.887	63.359	1	73910			15498	2746	13023	13405	15498	15498		
NYIQGINLVQAK	12	Unmodified	_NYIQGINLVQAK_			0	0	0	P52815	P52815	P52815	MRPL12	39S ribosomal protein L12, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.882801	1359.75105	1.8582	0.0012652	-1.0139	-0.00069038	0.84425	0.00057484	680.882171126294	11.296	0.19513	11.296	11.243	11.438	0	477	43	1.0055473068722	0.0282184646673942	1.0055473068722	406.840874100053	0	11.4170907252036						531	23	5	NaN	NaN	NaN	2.9102E-05	1	14207	126.82	116.12	1	330400			15499	1224	13024	13406	15499	15499		
NYLHYSLYDQAEK	13	Unmodified	_NYLHYSLYDQAEK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.594855	1642.76274	-0.20948	-0.00011492	0.49131	0.00026953	0.28183	0.00015461	548.59536785719	8.3785	0.13307	8.3785	8.3253	8.4584	0	708	70	0.849494101904619	0.0469115112528784	0.849494101904619	514.655981383983	0	28.4207857452161						391	16	4	NaN	NaN	NaN	0.00022242	1	22825	105.94	68.352	1	97927			15500	191	13025	13407	15500	15500		
NYLHYSLYDQAEK	13	Unmodified	_NYLHYSLYDQAEK_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.388645	1642.76274	2.7012	0.0022214	-0.31054	-0.00025538	2.3906	0.001966	822.388704903158	8.3785	0.17739	8.3785	8.2898	8.4672	0	351	37	1.08996939197032	0.0240541201161169	1.08996939197032	440.232325247131	0	9.71531981402683						456	21	5	NaN	NaN	NaN	0.00027428	1	22827	82.437	68.659	1	195550			15501	191	13025	13407	15501	15501		
NYLLSLPHK	9	Unmodified	_NYLLSLPHK_			0	0	0	P28482	P28482	P28482	MAPK1	Mitogen-activated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.811116	1083.60768	1.0221	0.00055483	0.020507	1.1131E-05	1.0426	0.00056596	542.811162243685	8.9819	0.15961	8.9819	8.9198	9.0794	0	591	37	0.928742107665821	0.0243181264417436	0.928742107665821	376.727830948721	0	9.86421844289976						291	19	3	NaN	NaN	NaN	0.010244	1	6309	43.734	27.277	1	74927			15502	879	13026	13408	15502	15502		
NYLNFVSPLPDIVGQK	16	Unmodified	_NYLNFVSPLPDIVGQK_			0	0	0	Q9Y2X9	Q9Y2X9	Q9Y2X9	ZNF281	Zinc finger protein 281	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.485619	1802.95669	1.4253	0.0012863	-5.0466	-0.0045545	-3.6213	-0.0032682	902.981941940827	17.849	0.1862	17.849	17.743	17.929	0	276	37	1.13998907770044	0.0239648752236348	1.13998907770044	460.092708766499	0	9.67207894582197						354	22	4	NaN	NaN	NaN	0.00018471	1	27300	61.042	28.991	1	76001			15503	3358	13027	13409	15503	15503		
NYLSCDVEVR	10	Unmodified	_NYLSCDVEVR_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.792795	1253.57104	2.0856	0.0013093	5.6141	0.0035245	7.6997	0.0048338	628.298681006965	7.7664	0.16853	7.7664	7.7309	7.8995	0	516	55	0.979317271586824	0.0363712953515518	0.979317271586824	396.565823463052	0	14.7282327290469						461	20	3	NaN	NaN	NaN	0.00077207	1	11018	72.042	52.786	1	126750			15504	1064	13028	13410	15504	15504		
NYLSLAPLFFK	11	Unmodified	_NYLSLAPLFFK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.868631	1311.72271	0.062433	4.101E-05	-5.5639	-0.0036547	-5.5015	-0.0036137	656.868154775328	18.896	0.16849	18.896	18.816	18.984	0	546	40	0.959108205975751	0.0262881524128359	0.959108205975751	388.194748695844	0	10.6400118943794						481	20	5	NaN	NaN	NaN	0.012037	1	12714	55.235	43.875	1	141770			15505	108	13029	13411	15505	15505		
NYMSNPSYNYEIVNR	15	Unmodified	_NYMSNPSYNYEIVNR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.42015	1862.82575	1.8508	0.0017257	-1.1839	-0.0011038	0.66697	0.0006219	932.419791861645	9.9396	0.079799	9.9396	9.913	9.9928	0	297	31	1.12600091227925	0.0199927208800443	1.12600091227925	454.335656214743	0	8.06696145757684						155	10	3	NaN	NaN	NaN	0.0055455	1	28745	42.061	38.773	1	28063			15506	1737	13030	13412	15506	15506		
NYPATFWVNPQFK	13	Unmodified	_NYPATFWVNPQFK_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.401358	1610.78816	0.96774	0.00078038	0.66491	0.00053618	1.6326	0.0013166	806.40208663797	14.843	0.23943	14.843	14.701	14.941	0	390	64	1.06389100039157	0.0421556968766068	1.06389100039157	429.770736122524	0	17.0292679153683						662	28	4	NaN	NaN	NaN	0.020749	1	21916	43.168	39.186	1	207330			15507	559	13031	13413	15507	15507		
NYPNTFWMNPQYLIK	15	Unmodified	_NYPNTFWMNPQYLIK_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.971822	1927.92909	1.8584	0.0017933	1.0527	0.0010158	2.911	0.0028091	965.474406423283	17.734	0.17733	17.734	17.654	17.832	0	219	61	1.17788915118882	0.0398482429728073	1.17788915118882	475.153637907536	0	16.0745496243369						806	21	4	NaN	NaN	NaN	0.00054258	1	30240	44.598	39.781	1	243310			15508	739	13032	13414	15508	15508		
NYQQNYQNSESGEK	14	Unmodified	_NYQQNYQNSESGEK_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.86098	1687.70741	3.2228	0.0027228	-6.4977	-0.0054897	-3.2749	-0.0027668	845.356136524387	2.8094	0.19506	2.8094	2.774	2.969	0	429	79	1.03776581230406	0.0522900806407443	1.03776581230406	419.054260339811	0	21.1149575426521						755	23	4	NaN	NaN	NaN	1.3205E-11	1	24125	189.56	167.55	1	167000			15509	1440	13033	13415	15509	15509		
NYSWMDIITICK	12	Unmodified	_NYSWMDIITICK_			0	0	0	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.367812	1542.72107	0.58014	0.00044808	0.53898	0.00041629	1.1191	0.00086437	772.368487314032	17.956	0.11526	17.956	17.912	18.027	0	447	40	1.02569221487577	0.0261684967549374	1.02569221487577	414.495731316401	0	10.5750341501835						332	14	4	NaN	NaN	NaN	5.0376E-05	1	19803	99.174	92.034	1	90489			15510	2757	13034	13416	15510	15510		
NYTDEAIETDDLTIK	15	Unmodified	_NYTDEAIETDDLTIK_			0	0	0	O14818	O14818	O14818	PSMA7	Proteasome subunit alpha type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.912347	1739.81014	2.999	0.0026118	-1.601	-0.0013944	1.3979	0.0012175	870.910824428203	11.35	0.31942	11.35	11.296	11.616	0	333	67	1.10198982404297	0.0440567314549862	1.10198982404297	444.879620397864	0	17.7859554943591						1219	37	6	NaN	NaN	NaN	4.5002E-34	1	25585	249.45	242.7	1	666390			15511	121	13035	13417	15511	15511		
NYTDNELEK	9	Unmodified	_NYTDNELEK_			0	0	0	P00367	P00367	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.256568	1124.49858	2.2001	0.0012392	1.1506	0.00064809	3.3507	0.0018873	563.257247947176	4.0066	0.3015	4.0066	3.9622	4.2637	0	639	40	0.896281965493857	0.026401305375596	0.896281965493857	363.394922993277	0	10.7043326801742						439	35	3	NaN	NaN	NaN	0.010077	1	7379	58.426	43.891	1	155740			15512	472	13036	13418	15512	15512		
NYTEEEDRFLICMLHK	16	Unmodified	_NYTEEEDRFLICMLHK_			0	0	1	O60264;P28370	O60264	O60264	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.995925	2096.96595	0.54906	0.00038434	0.25706	0.00017994	0.80611	0.00056428	700.3305483957	13.682	0.097516	13.682	13.646	13.744	0	561	31	0.948993180460448	0.0202370558589571	0.948993180460448	573.89477728765	0	12.2381708364846						334	12	5	NaN	NaN	NaN	0.0032153	1	33269	59.731	53.209	1	123110			15513	251	13037	13419	15513	15513		
NYYQDTPK	8	Unmodified	_NYYQDTPK_			0	0	0	Q9Y3C1	Q9Y3C1	Q9Y3C1	NOP16	Nucleolar protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.737814	1027.46108	1.3487	0.00069424	0.51458	0.00026487	1.8633	0.00095911	514.738192775305	3.3947	0.10651	3.3947	3.3592	3.4657	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	359.686777503526	0	7.42533888308117						178	13	3	NaN	NaN	NaN	0.0046976	1	4915	72.492	69.894	1	47870			15514	3383	13038	13420	15514	15514		
PAANFDAIR	9	Unmodified	_PAANFDAIR_			0	0	0	P20073	P20073	P20073	ANXA7	Annexin A7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.756341	973.498129	0.094331	4.601E-05	1.8909	0.00092229	1.9852	0.0009683	487.757450893534	6.6402	0.23057	6.6402	6.5338	6.7644	-8.8818E-16	738	64	0.829104889055312	0.0428203400370405	0.829104889055312	336.788854771188	0	17.3939551827027						638	27	3	NaN	NaN	NaN	0.00050836	1	3706	91.783	70.508	1	343640			15515	777	13039	13421	15515	15515		
PAASDLPVPAEGVR	14	Unmodified	_PAASDLPVPAEGVR_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.869891	1377.72523	1.5974	0.001102	-0.42214	-0.00029122	1.1753	0.00081079	689.870060130512	8.8133	0.19534	8.8133	8.7245	8.9198	0	444	124	1.02770517576159	0.0826913455280224	1.02770517576159	415.751270732351	0	33.4522320142704						988	23	2	NaN	NaN	NaN	1.5276E-05	1	14740	71.896	59.3	1	339250			15516	1554	13040	13422	15516	15516		
PAAVAAENEEIGSHIK	16	Unmodified	_PAAVAAENEEIGSHIK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.420476	1634.8264	2.2656	0.0018542	-2.4017	-0.0019656	-0.13608	-0.00011137	818.418641831379	5.9307	0.062182	5.9307	5.9041	5.9663	0	282	25	1.13599383354359	0.015985375365998	1.13599383354359	458.839965730545	0	6.45666276395582						129	8	3	NaN	NaN	NaN	5.6011E-12	1	22625	126.63	110.34	1	30753			15517	3406	13041	13423	15517	15517		
PAAVAAENEEIGSHIK	16	Unmodified	_PAAVAAENEEIGSHIK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.94941	1634.8264	0.74826	0.00040851	1.0092	0.00055099	1.7575	0.0009595	546.284376342231	5.9307	0.15081	5.9307	5.8687	6.0195	0	657	40	0.884090832094921	0.0264269571469923	0.884090832094921	535.637718146766	0	16.0111093904632						308	18	4	NaN	NaN	NaN	0.031289	1	22626	38.584	36.283	1	123190			15518	3406	13041	13423	15518	15518		
PAAVVAPITTGYTVK	15	Unmodified	_PAAVVAPITTGYTVK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.620453	1486.83953	0.22773	0.00011309	0.21965	0.00010908	0.44738	0.00022218	496.620465952231	10.383	0.088649	10.383	10.347	10.436	0	675	34	0.871889544407995	0.0223798999073166	0.871889544407995	528.686405616557	0	13.5704676308411						163	11	2	NaN	NaN	NaN	0.0035073	1	18151	47.334	43.351	1	81755			15519	2950	13042	13424	15519	15519		
PAAVVAPITTGYTVK	15	Unmodified	_PAAVVAPITTGYTVK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.427042	1486.83953	2.3815	0.0017728	1.2398	0.00092292	3.6213	0.0026958	744.428162048923	10.374	0.24829	10.374	10.321	10.569	0	426	163	1.03977710643793	0.108363321456844	1.03977710643793	420.328049795389	0	43.8056803667713						2411	29	5	NaN	NaN	NaN	0.004059	1	18152	44.82	32.862	1	2078600			15520	2950	13042	13424	15520	15520		
PAAVVLQTK	9	Unmodified	_PAAVVLQTK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.78711	925.559667	-0.023625	-1.0957E-05	0.61796	0.0002866	0.59433	0.00027564	463.787487264239	4.8844	0.27483	4.8844	4.8312	5.1061	0	762	49	0.812773098473386	0.0326817653854051	0.812773098473386	330.39282954366	0	13.2851603485						670	32	4	NaN	NaN	NaN	4.0769E-06	1	2798	154.71	131.13	1	413050			15521	1771	13043	13425	15521	15521		
PADAVYGQK	9	Unmodified	_PADAVYGQK_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.742899	947.471246	-0.20575	-9.7678E-05	1.2443	0.00059073	1.0386	0.00049305	474.743549619829	2.57	0.11531	2.57	2.5523	2.6676	0	762	25	0.812773098473386	0.0163408788985463	0.812773098473386	330.281049093784	0	6.64033127555962						134	14	2	NaN	NaN	NaN	0.01024	1	3195	53.878	48.13	1	31956			15522	1649	13044	13426	15522	15522		
PADLDLIQSTPFK	13	Unmodified	_PADLDLIQSTPFK_			0	0	0	Q9GZY8	Q9GZY8	Q9GZY8	MFF	Mitochondrial fission factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.887749	1443.76095	1.4198	0.0010264	-3.4929	-0.002525	-2.0731	-0.0014986	722.88495588062	14.444	0.17731	14.444	14.32	14.498	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	414.748341367996	0	11.3978000003227						306	21	2	NaN	NaN	NaN	6.8005E-06	1	16788	82.437	70.419	1	117380			15523	2835	13045	13427	15523	15523		
PADTEPPPLLVYK	13	Unmodified	_PADTEPPPLLVYK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.392667	1438.77078	1.5064	0.0010852	0.85057	0.00061275	2.357	0.001698	720.894559895272	11.704	0.25722	11.704	11.562	11.82	0	402	109	1.05585747106793	0.0724416933118124	1.05585747106793	426.959983590739	0	29.2934463554189						1116	30	4	NaN	NaN	NaN	0.0027429	1	16641	70.389	66.186	1	359520			15524	2064	13046	13428	15524	15524		
PADVYLIDEPSAYLDSEQR	19	Unmodified	_PADVYLIDEPSAYLDSEQR_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.02095	2180.02734	1.1075	0.0012083	0.76491	0.00083453	1.8724	0.0020428	1091.52320844039	15.101	0.14187	15.101	15.047	15.189	0	132	88	1.23554629282893	0.0575702018481357	1.23554629282893	498.000090300319	0	23.2042829033431						696	17	4	NaN	NaN	NaN	6.9642E-05	1	34451	58.508	55.434	1	154150			15525	1335	13047	13429	15525	15525		
PAEATAGSGGVNGGEEQGLGK	21	Unmodified	_PAEATAGSGGVNGGEEQGLGK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.44795	1884.88135	3.6247	0.0034197	-3.0719	-0.0028981	0.55281	0.00052155	943.444985592431	4.5209	0.044336	4.5209	4.4943	4.5386	0	333	34	1.10198982404297	0.0220298733175506	1.10198982404297	444.608848689249	0	8.88817337400775						89	6	2	NaN	NaN	NaN	3.15E-11	1	29255	94.63	91.377	1	19130			15526	1919	13048	13430	15526	15526		
PAEELAQLWAAEELDMK	17	Unmodified	_PAEELAQLWAAEELDMK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.474591	1942.93463	1.7349	0.0016872	0.98712	0.00095995	2.7221	0.0026471	972.977169743816	17.841	0.18616	17.841	17.787	17.974	0	222	43	1.17589687683038	0.0278937633686938	1.17589687683038	474.323785219764	0	11.2515609878363						497	22	4	NaN	NaN	NaN	4.5242E-07	1	30582	73.305	56.546	1	109490			15527	2892	13049	13431	15527	15527		
PAEFTIDTK	9	Unmodified	_PAEFTIDTK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.263665	1020.51278	0.23875	0.00012206	-0.37177	-0.00019007	-0.13302	-6.8007E-05	511.263334090782	7.1634	0.30159	7.1634	7.0481	7.3496	0	705	55	0.851531465363931	0.0366801996858289	0.851531465363931	345.676663807398	0	14.8902178849815						479	35	2	NaN	NaN	NaN	0.0015036	1	4749	93.467	58.536	1	242380			15528	326	13050	13432	15528	15528		
PAETPVATSPTATDSTSGDSSR	22	Unmodified	_PAETPVATSPTATDSTSGDSSR_			0	0	0	P54727	P54727	P54727	RAD23B	UV excision repair protein RAD23 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.99038	2133.9662	3.2409	0.0034613	-2.2949	-0.0024509	0.94604	0.0010104	1068.48950784226	4.8844	0.14187	4.8844	4.8401	4.9819	0	204	124	1.18784641916898	0.0817283145364693	1.18784641916898	478.839586834704	0	32.9459698945916						1477	17	4	NaN	NaN	NaN	1.0781E-08	1	33792	93.777	91.387	1	375190			15529	1256	13051	13433	15529	15529		
PAEVEVTVLR	10	Unmodified	_PAEVEVTVLR_			0	0	0		REV__Q969S9	REV__Q969S9			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.819138	1111.62372	-0.069072	-3.8461E-05	-0.37576	-0.00020923	-0.44483	-0.00024769	556.819085977888	19.029	0.12415	19.029	18.993	19.117	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.676014231483	0	10.6924825250028						362	15	4	NaN	NaN	NaN	0.0035559	1	7044	72.492	64.31	1	217570	+		15530	3508	13052	13434	15530	15530		
PAFEEFCLPTK	11	Unmodified	_PAFEEFCLPTK_			0	0	0	Q9BZX2;Q9HA47	Q9BZX2	Q9BZX2	UCK2;UCK1	Uridine-cytidine kinase 2;Uridine-cytidine kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.823563	1337.63257	1.7479	0.0011708	-0.7317	-0.00049011	1.0162	0.00068069	669.822835913547	12.955	0.18623	12.955	12.866	13.052	0	525	43	0.973257487423603	0.0282887809416775	0.973257487423603	393.842045791508	0	11.4474447954274						569	22	5	NaN	NaN	NaN	0.00039655	1	13522	60.547	47.274	1	307590			15531	2815	13053	13435	15531	15531		
PAFFAEK	7	Unmodified	_PAFFAEK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	405.213246	808.41194	-1.1005	-0.00044593	-0.57937	-0.00023477	-1.6799	-0.0006807	405.213048702401	6.8087	0.43454	6.8087	6.7377	7.1723	0	852	55	0.751366682244005	0.0369209000619068	0.751366682244005	306.077541057768	0	15.0401376207392						1145	50	4	NaN	NaN	NaN	0.018223	1	1066	73.637	47.414	1	894250			15532	506	13054	13436	15532	15532		
PAFIFDGR	8	Unmodified	_PAFIFDGR_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.742702	921.470852	-1.638	-0.00075635	0.30257	0.00013971	-1.3355	-0.00061665	461.743187465439	10.631	0.18618	10.631	10.578	10.764	0	780	55	0.800512323802183	0.0367823368295792	0.800512323802183	325.429935380159	0	14.9530158895332						479	22	3	NaN	NaN	NaN	0.0097287	1	2729	75.243	63.883	1	120330			15533	275	13055	13437	15533	15533		
PAFLEFLK	8	Unmodified	_PAFLEFLK_			0	0	0	O15013;Q9HCE6	O15013	O15013	ARHGEF10;ARHGEF10L	Rho guanine nucleotide exchange factor 10;Rho guanine nucleotide exchange factor 10-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.778754	963.542954	-1.2565	-0.00060664	-1.0878	-0.00052519	-2.3444	-0.0011318	482.778275878617	15.916	0.12418	15.916	15.863	15.987	0	705	25	0.851531465363931	0.0162977768340994	0.851531465363931	345.948492144183	0	6.62123661942354						192	15	3	NaN	NaN	NaN	0.0050267	1	3513	65.313	55.234	1	49922			15534	136	13056	13438	15534	15534		
PAFTEEDVLNIFPVVK	16	Unmodified	_PAFTEEDVLNIFPVVK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.487827	1816.9611	0.72888	0.00066291	0.50664	0.00046079	1.2355	0.0011237	909.487899538721	19.295	0.088674	19.295	19.259	19.348	0	270	55	1.14398322290989	0.0359621578176168	1.14398322290989	461.677538172718	0	14.5132552262297						378	11	5	NaN	NaN	NaN	9.5014E-13	1	27654	126.48	121.09	1	108500			15535	307	13057	13439	15535	15535		
PAGPTVEQQGEMAR	14	Unmodified	_PAGPTVEQQGEMAR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.853915	1469.69328	3.0426	0.0022389	-1.7534	-0.0012902	1.2893	0.00094872	735.852693374585	4.512	0.17731	4.512	4.4677	4.645	0	423	43	1.04178812298108	0.0281561811759454	1.04178812298108	421.186315741614	0	11.3833110142544						527	21	4	NaN	NaN	NaN	6.6537E-12	1	17569	133.49	116.02	1	207510			15536	1259	13058	13440	15536	15536		
PAGVLGAVNK	10	Unmodified	_PAGVLGAVNK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.276909	924.539266	-1.3703	-0.00063483	-0.8766	-0.00040611	-2.2469	-0.0010409	463.276062493492	5.4873	0.10639	5.4873	5.4519	5.5583	0	774	34	0.804600385996946	0.0224827809983855	0.804600385996946	327.075903041612	0	9.13941383314426						174	13	2	NaN	NaN	NaN	0.0019404	1	2789	60.709	47.061	1	59163			15537	1921	13059	13441	15537	15537		
PAHVVVGDVLQAADVDK	17	Unmodified	_PAHVVVGDVLQAADVDK_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.312459	1731.91555	-0.078079	-4.5154E-05	-0.13803	-7.9827E-05	-0.21611	-0.00012498	578.312216370204	11.083	0.097544	11.083	11.039	11.137	0	714	70	0.845418525735192	0.0468398661091017	0.845418525735192	511.966548683801	0	28.3651751915825						576	12	4	NaN	NaN	NaN	1.0949E-06	1	25387	84.102	57.637	1	153300			15538	894	13060	13442	15538	15538		
PAHVVVGDVLQAADVDK	17	Unmodified	_PAHVVVGDVLQAADVDK_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.965051	1731.91555	2.4769	0.0021474	-0.25131	-0.00021787	2.2256	0.0019295	866.964767362843	11.083	0.079796	11.083	11.048	11.128	0	282	31	1.13599383354359	0.0199817200584811	1.13599383354359	458.623754108739	0	8.06702571455372						182	10	4	NaN	NaN	NaN	0.00011065	1	25388	67.887	62.499	1	44255			15539	894	13060	13442	15539	15539		
PAIADYAFTTLKPELGK	17	Unmodified	_PAIADYAFTTLKPELGK_			0	0	1	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.336493	1833.98765	0.74216	0.00045445	0.47867	0.0002931	1.2208	0.00074755	612.671288047805	14.249	0.079796	14.249	14.214	14.294	0	507	22	0.985374541851584	0.0141316768501546	0.985374541851584	596.45729218569	0	8.55404858770544						163	10	4	NaN	NaN	NaN	0.00091494	1	28089	54.309	52.172	1	42717			15540	9	13061	13443	15540	15540		
PAIMTMLADHAAR	13	Unmodified	_PAIMTMLADHAAR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.572452	1396.69553	-0.78414	-0.00036586	-0.43229	-0.00020169	-1.2164	-0.00056755	466.571935661596	10.755	0.15073	10.755	10.711	10.862	0	747	25	0.822982596624503	0.0163295196874556	0.822982596624503	499.327252888879	0	9.9075900753856						301	18	4	NaN	NaN	NaN	0.027369	1	15341	64.064	60.719	1	95654			15541	135	13062	13444	15541	15541		
PAIVEAGGMQALGK	14	Unmodified	_PAIVEAGGMQALGK_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.363387	1340.71222	0.95427	0.00064066	-4.734	-0.0031783	-3.7798	-0.0025376	671.361298771356	9.4962	0.20395	9.4962	9.4253	9.6292	0	510	55	0.983355730988811	0.0363461485221255	0.983355730988811	397.919108201496	0	14.7076246679726						475	24	3	NaN	NaN	NaN	0.00024662	1	13628	71.066	57.268	1	143630			15542	706	13063	13445	15542	15542		
PALELLEPIEQK	12	Unmodified	_PALELLEPIEQK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.392667	1378.77078	1.143	0.0007891	-1.3029	-0.00089952	-0.15994	-0.00011042	690.391761865587	14.391	0.16846	14.391	14.32	14.489	0	465	34	1.01360860968299	0.0221639917190946	1.01360860968299	410.045513240596	0	8.96622746994899						355	20	4	NaN	NaN	NaN	0.0035732	1	14785	71.066	65.57	1	111060			15543	1161	13064	13446	15543	15543		
PALLHSTFFPALQGAQTK	18	Unmodified	_PALLHSTFFPALQGAQTK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.019387	1926.03633	0.44037	0.00028316	-1.7844	-0.0011474	-1.3441	-0.00086425	643.352614516308	13.85	0.25713	13.85	13.7	13.957	0	699	55	0.85560534332665	0.0366496414922302	0.85560534332665	517.72104486354	0	22.1764518363785						1012	30	5	NaN	NaN	NaN	2.0266E-11	1	30200	158.02	149.65	1	415590			15544	818	13065	13447	15544	15544		
PALLHSTFFPALQGAQTK	18	Unmodified	_PALLHSTFFPALQGAQTK_			0	0	0	P23381	P23381	P23381	WARS	Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.025443	1926.03633	2.0352	0.001962	-0.42489	-0.0004096	1.6103	0.0015524	964.024208470987	13.85	0.1862	13.85	13.762	13.948	0	168	37	1.21171599086077	0.0238466525672962	1.21171599086077	488.802626321977	0	9.61966871098383						342	22	3	NaN	NaN	NaN	0.00011964	1	30201	62.398	57.01	1	60947			15545	818	13065	13447	15545	15545		
PALPFILR	8	Unmodified	_PALPFILR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.794738	925.574923	-1.5848	-0.000735	-0.059951	-2.7805E-05	-1.6447	-0.00076281	463.794671940811	14.799	0.097583	14.799	14.755	14.852	1.7764E-15	681	88	0.867820189810857	0.0590836001843336	0.867820189810857	352.769428900378	0	24.0175189965889						359	12	3	NaN	NaN	NaN	0.0019538	1	2799	110.23	92.537	1	81765			15546	1991	13066	13448	15546	15546		
PALPYLDVDMMDICK	15	Unmodified	_PALPYLDVDMMDICK_			0	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.919552	1779.82455	1.3613	0.0012128	1.2987	0.001157	2.66	0.0023698	890.920874195514	18.009	0.11528	18.009	17.965	18.08	0	306	40	1.12000185836644	0.026003062393495	1.12000185836644	452.07080579562	0	10.4957195218644						466	14	5	NaN	NaN	NaN	0.00012237	1	26665	58.313	56.329	1	135900			15547	3306	13067	13449	15547	15547		
PALVGWFGHELSTR	14	Unmodified	_PALVGWFGHELSTR_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.94393	1568.80996	0.26537	0.00013904	-0.96182	-0.00050394	-0.69645	-0.0003649	523.943480978067	13.948	0.18622	13.948	13.895	14.081	0	684	37	0.86578508874114	0.024426303976944	0.86578508874114	524.732162802791	0	14.8042135187806						608	22	5	NaN	NaN	NaN	5.1312E-06	1	20635	88.24	75.644	1	423740			15548	1903	13068	13450	15548	15548		
PALVSIPEDVVQAEAGGMHTVCLSK	25	Unmodified	_PALVSIPEDVVQAEAGGMHTVCLSK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	870.108496	2607.30366	1.9016	0.0016546	0.73967	0.00064359	2.6413	0.0022982	870.44333198502	16.191	0.30151	16.191	16.067	16.369	0	300	55	1.12400150285141	0.0359968140029667	1.12400150285141	678.854155520253	0	21.7407064931959						1188	35	6	NaN	NaN	NaN	6.0851E-10	1	37266	131.02	125.18	1	448650			15549	758	13069	13451	15549	15549		
PALVSIPEDVVQAEAGGMHTVCLSK	25	Oxidation (M)	_PALVSIPEDVVQAEAGGM(Oxidation (M))HTVCLSK_	PALVSIPEDVVQAEAGGM(1)HTVCLSK	PALVSIPEDVVQAEAGGM(44)HTVCLSK	0	1	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.440134	2623.29857	1.6232	0.001421	0.47094	0.00041228	2.0941	0.0018333	875.775236043278	14.772	0.13305	14.772	14.693	14.826	0	333	28	1.10198982404297	0.0180219585997581	1.10198982404297	665.538420135848	0	10.8842256004071						330	16	5	NaN	NaN	NaN	0.0018932	1	37331	43.767	43.253	1	69089			15550	758	13069	13452	15550	15550	256	
PANFLDLGGGVK	12	Unmodified	_PANFLDLGGGVK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.324588	1186.63462	0.60355	0.0003587	-2.001	-0.0011892	-1.3974	-0.00083053	594.323565913204	12.635	0.22171	12.635	12.573	12.795	0	615	58	0.912521036363781	0.0385223886252621	0.912521036363781	369.744308119066	0	15.6088828221414						504	26	2	NaN	NaN	NaN	0.0035732	1	9068	63.212	47.63	1	222670			15551	2557	13070	13453	15551	15551		
PAPAVGEAEDK	11	Unmodified	_PAPAVGEAEDK_			0	0	0	P16989	P16989	P16989	YBX3	Y-box-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.269478	1082.5244	1.4889	0.00080739	-0.45669	-0.00024765	1.0322	0.00055974	542.268941068781	3.0045	0.32808	3.0045	2.9513	3.2794	0	708	34	0.849494101904619	0.0224141150004975	0.849494101904619	344.586608188934	0	9.09200410722252						367	38	3	NaN	NaN	NaN	0.0029199	1	6266	72.365	67.458	1	103180			15552	733	13071	13454	15552	15552		
PAPDETSFSEALLK	14	Unmodified	_PAPDETSFSEALLK_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.880121	1503.74569	1.8435	0.0013879	1.6017	0.0012059	3.4451	0.0025938	752.88154747009	12.671	0.32809	12.671	12.502	12.83	0	420	58	1.04379886199097	0.0381987855157915	1.04379886199097	421.91008733703	0	15.4401901745659						897	38	4	NaN	NaN	NaN	1.7339E-06	1	18628	133.49	115.76	1	378170			15553	1605	13072	13455	15553	15553		
PAPFFVLDEIDAALDNTNIGK	21	Unmodified	_PAPFFVLDEIDAALDNTNIGK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.054714	2259.14231	0.69608	0.00052488	-0.96712	-0.00072926	-0.27104	-0.00020438	754.388885211503	20.155	0.044344	20.155	20.128	20.173	0	426	34	1.03977710643793	0.0221272927649854	1.03977710643793	628.498731589406	0	13.3749582965365						155	6	5	NaN	NaN	NaN	0.025264	1	35268	35.246	30.164	1	40828			15554	1764	13073	13456	15554	15554		
PAPLLESPFK	10	Unmodified	_PAPLLESPFK_			0	0	0	O00203	O00203	O00203	AP3B1	AP-3 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.813325	1097.6121	-0.058353	-3.2083E-05	-1.2148	-0.00066793	-1.2732	-0.00070001	549.812654681186	12.352	0.18621	12.352	12.263	12.449	0	654	40	0.886123392477847	0.0264159589549013	0.886123392477847	359.38272713816	0	10.7134508012883						547	22	4	NaN	NaN	NaN	0.00077207	1	6652	81.163	65.582	1	151810			15555	61	13074	13457	15555	15555		
PAPPQTEQVESK	12	Unmodified	_PAPPQTEQVESK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.832974	1309.6514	2.3491	0.0015406	-1.5449	-0.0010132	0.80417	0.0005274	655.832100722727	3.2617	0.15961	3.2617	3.2173	3.3769	4.4409E-16	570	34	0.942920803299286	0.0222684693182358	0.942920803299286	381.649245295583	0	9.01321137412111						343	19	4	NaN	NaN	NaN	0.055326	1	12641	38.1	19.593	1	88638			15556	1807	13075	13458	15556	15556		
PAPYWEGTAVIDGEFK	16	Unmodified	_PAPYWEGTAVIDGEFK_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.433052	1778.85155	2.1041	0.0018736	-0.51573	-0.00045922	1.5884	0.0014144	890.433211050317	14.95	0.39016	14.95	14.808	15.198	0	303	67	1.12200181823275	0.0440082277490712	1.12200181823275	452.879978847974	0	17.7632914031533						1426	45	5	NaN	NaN	NaN	0.013851	1	26644	47.57	38.414	1	397650			15557	1637	13076	13459	15557	15557		
PAQPALSREELEALFLPYDLK	21	Unmodified	_PAQPALSREELEALFLPYDLK_			0	0	1	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.765164	2399.27366	0.46382	0.00037141	-2.0958	-0.0016783	-1.632	-0.0013068	801.097819977316	18.426	0.088664	18.426	18.39	18.479	0	540	61	0.963152256458504	0.0404349276895257	0.963152256458504	581.974706089173	0	24.4323833537762						312	11	3	NaN	NaN	NaN	9.7272E-06	1	36342	35.225	33.601	1	61965			15558	2841	13077	13460	15558	15558		
PARPDPIDMDEDELEMLSEAR	21	Unmodified	_PARPDPIDMDEDELEMLSEAR_			0	0	1	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	810.370156	2428.08864	1.2892	0.0010447	0.47739	0.00038686	1.7665	0.0014316	810.704974202228	15.118	0.10643	15.118	15.083	15.189	0	501	37	0.98941132619024	0.0242173613457122	0.98941132619024	597.800625977793	0	14.6320881809003						366	13	4	NaN	NaN	NaN	1.3167E-05	1	36478	63.025	59.584	1	78057			15559	2640	13078	13461	15559	15559		
PASGCEAETQTEELK	15	Unmodified	_PASGCEAETQTEELK_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.369792	1648.72503	3.3135	0.0027349	-1.77	-0.0014609	1.5435	0.001274	825.368397075648	4.4499	0.088654	4.4499	4.4233	4.512	0	411	37	1.04982941439551	0.0241172212531353	1.04982941439551	424.007201965817	0	9.74051151788365						258	11	4	NaN	NaN	NaN	0.0017693	1	22985	47.57	37.32	1	55847			15560	657	13079	13462	15560	15560		
PASISEEELLNLINK	15	Unmodified	_PASISEEELLNLINK_			0	0	0	P13995	P13995	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.453985	1668.89342	1.5221	0.0012716	-0.068877	-5.7544E-05	1.4532	0.0012141	835.454079564027	16.963	0.27488	16.963	16.892	17.167	0	330	43	1.10399226369747	0.0280360922618905	1.10399226369747	445.837688869127	0	11.3221324007287						714	32	5	NaN	NaN	NaN	9.2585E-34	1	23606	232.48	224.11	1	329540			15561	691	13080	13463	15561	15561		
PASPATETVPAFSER	15	Unmodified	_PASPATETVPAFSER_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.388645	1558.76274	1.6392	0.0012792	-1.6241	-0.0012674	0.015115	1.1795E-05	780.888758250763	8.547	0.17733	8.547	8.4584	8.6357	0	447	49	1.02569221487577	0.0321962682472983	1.02569221487577	414.457796835453	0	13.0097452340658						307	21	3	NaN	NaN	NaN	0.0015628	1	20318	50.314	46.331	1	64509			15562	2108	13081	13464	15562	15562		
PATFTVNTK	9	Unmodified	_PATFTVNTK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.766374	977.518196	0.36383	0.00017819	0.23887	0.00011699	0.6027	0.00029518	489.766427846921	5.0085	0.20392	5.0085	4.9642	5.1681	0	762	43	0.812773098473386	0.0285925652531284	0.812773098473386	330.135849413853	0	11.613857341603						419	24	3	NaN	NaN	NaN	0.00013187	1	3790	111.39	90.117	1	112100			15563	792	13082	13465	15563	15563		
PATGRPEDTFYFDPEFTAK	19	Unmodified	_PATGRPEDTFYFDPEFTAK_			0	0	1	P51812	P51812	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	730.344376	2188.0113	0.43574	0.00031824	-0.40905	-0.00029875	0.026691	1.9494E-05	730.678468400788	13.008	0.13302	13.008	12.937	13.07	0	594	52	0.926715457081489	0.0344482986469864	0.926715457081489	560.269232198769	0	20.8265888801333						502	16	5	NaN	NaN	NaN	0.00021629	1	34549	42.218	36.831	1	110970			15564	1200	13083	13466	15564	15564		
PATLTTTSATSK	12	Unmodified	_PATLTTTSATSK_			0	0	0	O43670	O43670	O43670	ZNF207	BUB3-interacting and GLEBS motif-containing protein ZNF207	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.816793	1177.61903	1.8874	0.0011132	1.2205	0.00071985	3.1078	0.0018331	589.817620199238	3.173	0.18623	3.173	3.1464	3.3326	0	633	49	0.900343422309015	0.0324826533406289	0.900343422309015	364.84214502371	0	13.1628005794317						300	22	3	NaN	NaN	NaN	0.00039361	1	8828	99.34	82.688	1	59566			15565	216	13084	13467	15565	15565		
PAVAALGDLTDLPTYEHIQTALSSK	25	Unmodified	_PAVAALGDLTDLPTYEHIQTALSSK_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.125309	2610.3541	0.46925	0.00040878	0.92014	0.00080155	1.3894	0.0012103	871.460309321177	17.309	0.15962	17.309	17.202	17.362	0	465	58	1.01360860968299	0.0382832693843467	1.01360860968299	612.177252776546	0	23.1214952745354						713	19	5	NaN	NaN	NaN	1.355E-06	1	37282	39.483	37.42	1	148660			15566	1590	13085	13468	15566	15566		
PAVAILSFK	9	Unmodified	_PAVAILSFK_			0	0	0	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.292028	944.569503	-1.2211	-0.00057793	-1.5554	-0.00073618	-2.7765	-0.0013141	473.291133529868	12.6	0.11528	12.6	12.556	12.671	0	735	43	0.831145085810763	0.028552837009126	0.831145085810763	337.761597047356	0	11.6033313474118						260	14	3	NaN	NaN	NaN	0.0065422	1	3160	49.96	15.029	1	69422			15567	354	13086	13469	15567	15567		
PAVCYQAITK	10	Unmodified	_PAVCYQAITK_			0	0	0	Q49A26	Q49A26	Q49A26	GLYR1	Putative oxidoreductase GLYR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.799891	1149.58523	0.37811	0.00021772	0.24215	0.00013943	0.62026	0.00035715	575.801195706844	6.3121	0.10644	6.3121	6.25	6.3565	0	627	31	0.90440375274676	0.0202988394656143	0.90440375274676	366.590959126117	0	8.22793028693928						159	13	3	NaN	NaN	NaN	0.017019	1	8058	41.796	30.436	1	62009			15568	1938	13087	13470	15568	15568		
PAVEASTGGEATQETGK	17	Unmodified	_PAVEASTGGEATQETGK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.889206	1631.76386	2.6585	0.0021717	-1.5734	-0.0012853	1.0851	0.0008864	816.887698198316	3.4213	0.071046	3.4213	3.3947	3.4657	0	420	31	1.04379886199097	0.0201087800634321	1.04379886199097	421.608084178941	0	8.12227771694256						138	9	3	NaN	NaN	NaN	2.0503E-05	1	22538	80.815	79.105	1	27172			15569	2819	13088	13471	15569	15569		
PAVLSGYFK	9	Unmodified	_PAVLSGYFK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.273835	980.533118	0.17187	8.4433E-05	-0.77107	-0.00037881	-0.59921	-0.00029438	491.273522297798	10.356	0.15958	10.356	10.303	10.463	0	696	37	0.857641857947968	0.0244364826116721	0.857641857947968	348.34598929537	0	9.92529764187236						281	19	3	NaN	NaN	NaN	0.017696	1	3857	37.722	15.795	1	90301			15570	3422	13089	13472	15570	15570		
PAVNQIECHPYLTQEK	16	Unmodified	_PAVNQIECHPYLTQEK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.97255	1925.93055	2.3478	0.0022632	-1.3605	-0.0013115	0.98722	0.00095165	964.473132299671	7.1457	0.088682	7.1457	7.1102	7.1989	0	222	58	1.17589687683038	0.0378740379795985	1.17589687683038	474.3534918233	0	15.2782803654494						436	11	4	NaN	NaN	NaN	0.0011006	1	30184	65.173	61.19	1	99158			15571	708	13090	13473	15571	15571		
PAVNQIECHPYLTQEK	16	Unmodified	_PAVNQIECHPYLTQEK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.984125	1925.93055	2.0007	0.0012864	0.53746	0.00034558	2.5382	0.001632	643.31907473024	7.1457	0.34591	7.1457	7.0214	7.3674	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	586.466451913407	0	14.6740500801627						907	40	6	NaN	NaN	NaN	6.4449E-19	1	30186	232.35	200.29	1	774230			15572	708	13090	13473	15572	15572		
PAVPTVASSTDMLHSK	16	Unmodified	_PAVPTVASSTDMLHSK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.615262	1639.82396	0.84197	0.00046108	0.97637	0.00053467	1.8183	0.00099575	547.616035528609	8.618	0.15073	8.618	8.5205	8.6712	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	557.763487413706	0	11.0566946371094						277	18	3	NaN	NaN	NaN	0.024748	1	22758	50.116	44.965	1	64798			15573	1713	13091	13474	15573	15573		
PAVTTLVVK	9	Unmodified	_PAVTTLVVK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.29731	926.580068	-1.3613	-0.00063204	0.29978	0.00013919	-1.0615	-0.00049286	464.297436967957	7.5447	0.14187	7.5447	7.5003	7.6422	0	765	34	0.810730346695089	0.0224702728223195	0.810730346695089	329.557142815295	0	9.13403444165004						259	17	3	NaN	NaN	NaN	0.00055096	1	2812	99.305	64.373	1	108460			15574	1193	13092	13475	15574	15574		
PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK	34	Unmodified	_PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1096.91692	3287.72892	0.056524	6.2002E-05	0.085352	9.3624E-05	0.14188	0.00015563	1097.58348112158	16.812	0.20398	16.812	16.759	16.963	0	84	133	1.26725910986255	0.0872462794398621	1.26725910986255	764.535675178568	0	52.6355601938484						1948	24	6	NaN	NaN	NaN	2.591E-11	1	38534	121.07	118.82	1	508910			15575	1606	13093	13476	15575	15575		
PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK	34	Unmodified	_PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1096.91692	3287.72892	0.27986	0.00030698	0.94082	0.001032	1.2207	0.001339	1097.58590463567	16.803	0.070904	16.803	16.768	16.839	0	210	46	1.18386433251387	0.0298718109844258	1.18386433251387	714.223718311752	0	18.0216223498334						221	9	5	NaN	NaN	NaN	2.2805E-07	1	38535	59.122	59.122	1	35058			15576	1606	13093	13476	15576	15576		
PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK	34	Unmodified	_PAVVAPAPVVEAVSTPSAAFPSDATAEQGPILTK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	822.939507	3287.72892	0.8399	0.00069118	2.5115	0.0020668	3.3514	0.002758	823.443248755999	16.812	0.14188	16.812	16.75	16.892	0	261	58	1.14997238118939	0.037931351551258	1.14997238118939	925.034467014517	0	30.5118697973145						725	17	6	NaN	NaN	NaN	0.035968	1	38536	20.663	20.655	1	207470			15577	1606	13093	13476	15577	15577		
PAVVETVTTAK	11	Unmodified	_PAVVETVTTAK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.318971	1114.62339	1.2638	0.00070559	0.82926	0.00046299	2.093	0.0011686	558.319970578164	5.3189	0.19511	5.3189	5.2745	5.4697	0	612	49	0.914549654013882	0.0324601421719642	0.914549654013882	370.841287425964	0	13.1622825072966						596	23	4	NaN	NaN	NaN	0.00051159	1	7129	81.099	68.272	1	341650			15578	1284	13094	13477	15578	15578		
PAVVTVGDFPEEDYGLDEI	19	Unmodified	_PAVVTVGDFPEEDYGLDEI_			0	0	0	Q99426	Q99426	Q99426	TBCB	Tubulin-folding cofactor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.98604	2063.95753	1.0378	0.0010721	0.68598	0.0007086	1.7238	0.0017807	1033.48799132937	18.887	0.13298	18.887	18.816	18.949	0	168	58	1.21171599086077	0.037785717631813	1.21171599086077	488.568902176238	0	15.2353577245458						511	16	4	NaN	NaN	NaN	6.7852E-09	1	32769	145.95	136.79	1	102430			15579	2637	13095	13478	15579	15579		
PAYHSSLMDPDTK	13	Unmodified	_PAYHSSLMDPDTK_			0	0	0	O15145	O15145	O15145	ARPC3	Actin-related protein 2/3 complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.894136	1460.66058	0.19168	9.3521E-05	1.4326	0.00069896	1.6243	0.00079248	487.894755113426	5.1504	0.15961	5.1504	5.0795	5.2391	0	762	46	0.812773098473386	0.0306412849753211	0.812773098473386	492.921380537872	0	18.5829778567458						408	19	4	NaN	NaN	NaN	2.2163E-05	1	17279	108.4	93.253	1	91602			15580	149	13096	13479	15580	15580		
PAYNPYTEPSMEVFSYHQGLK	21	Unmodified	_PAYNPYTEPSMEVFSYHQGLK_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.050976	2457.1311	1.442	0.0011825	-0.12795	-0.00010492	1.3141	0.0010776	820.385279552444	13.017	0.1064	13.017	12.972	13.079	0	417	70	1.04580932352505	0.0462342637140174	1.04580932352505	631.833712708082	0	27.9327845331189						849	13	6	NaN	NaN	NaN	3.4853E-16	1	36606	185.57	180.73	1	299000			15581	3337	13097	13480	15581	15581		
PCCAVDPIENEEDR	14	Unmodified	_PCCAVDPIENEEDR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.353619	1702.69268	2.0472	0.0017449	-0.81216	-0.00069225	1.235	0.0010526	852.35334159363	6.7998	0.079825	6.7998	6.7555	6.8353	0	396	34	1.05987478976334	0.0220967798859319	1.05987478976334	427.951261247779	0	8.92213392849033						170	10	3	NaN	NaN	NaN	0.013114	1	24568	53.028	50.549	1	32855			15582	1991	13098	13481	15582	15582		
PCDLPLR	7	Unmodified	_PCDLPLR_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.728738	869.442923	-1.0725	-0.00046732	1.582	0.00068931	0.50946	0.00022199	435.729227324631	6.0638	0.15961	6.0638	5.9929	6.1525	0	750	34	0.820941264895493	0.0224577750816375	0.820941264895493	334.028022594758	0	9.13771365038173						284	19	2	NaN	NaN	NaN	0.016696	1	1853	58.687	51.336	1	68049			15583	78	13099	13482	15583	15583		
PCGLCNQFGHEVK	13	Unmodified	_PCGLCNQFGHEVK_			0	0	0	Q9H0D6	Q9H0D6	Q9H0D6	XRN2	5-3 exoribonuclease 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.902749	1544.68642	-0.256	-0.00013207	0.95039	0.00049031	0.69439	0.00035824	515.903377675674	5.7978	0.053182	5.7978	5.7711	5.8243	0	744	22	0.82502364452135	0.0142853496956143	0.82502364452135	500.095822903101	0	8.65919875015402						113	7	3	NaN	NaN	NaN	0.01281	1	19868	76.85	74.179	1	26912			15584	2843	13100	13483	15584	15584		
PCHPDDQFTTSILR	14	Unmodified	_PCHPDDQFTTSILR_			0	0	0	Q68E01	Q68E01	Q68E01	INTS3	Integrator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.934995	1685.78315	-1.4358	-0.00080826	1.3552	0.00076291	-0.080554	-4.5346E-05	562.935712348844	9.2391	0.15074	9.2391	9.1326	9.2834	0	774	34	0.804600385996946	0.0224765256052036	0.804600385996946	487.353726899519	0	13.614234733278						205	18	3	NaN	NaN	NaN	0.034715	1	24071	32.051	30.998	1	41708			15585	2024	13101	13484	15585	15585		
PCNHVLSLSFPIR	13	Unmodified	_PCNHVLSLSFPIR_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.941532	1538.80277	0.088947	4.5713E-05	-1.1119	-0.00057144	-1.0229	-0.00052572	514.275536000347	12.751	0.23942	12.751	12.6	12.839	0	708	55	0.849494101904619	0.0366700093761401	0.849494101904619	514.946296283276	0	22.2286246256205						608	28	4	NaN	NaN	NaN	0.0025548	1	19696	68.49	65.145	1	168390			15586	472	13102	13485	15586	15586		
PCSETSQIEDTPSSK	15	Unmodified	_PCSETSQIEDTPSSK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.367249	1664.71994	3.7032	0.0030861	-2.2994	-0.0019163	1.4037	0.0011698	833.365887860665	3.9977	0.088654	3.9977	3.9711	4.0598	0	423	28	1.04178812298108	0.0180991506122403	1.04178812298108	420.725779752539	0	7.30933582963473						162	11	3	NaN	NaN	NaN	0.0010138	1	23466	59.67	58.414	1	33900			15587	869	13103	13486	15587	15587		
PDEAVVWR	8	Unmodified	_PDEAVVWR_			0	0	0	Q9Y5Y2	Q9Y5Y2	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.250892	970.48723	-0.51361	-0.00024974	0.67728	0.00032933	0.16367	7.9582E-05	486.251647789524	7.1457	0.20404	7.1457	7.0569	7.261	0	750	46	0.820941264895493	0.0306114701428865	0.820941264895493	333.487142776464	0	12.4351548042086						368	24	3	NaN	NaN	NaN	0.0051847	1	3638	58.286	44.638	1	89681			15588	3446	13104	13487	15588	15588		
PDEPDTLEAAK	11	Unmodified	_PDEPDTLEAAK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.285325	1184.5561	0.35837	0.00021262	1.388	0.00082351	1.7464	0.0010361	593.287487571912	12.68	0.17737	12.68	12.609	12.786	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	363.994614319306	0	8.22847298004382						295	21	3	NaN	NaN	NaN	0.056917	1	8988	25.857	14.497	1	72337			15589	2422	13105	13488	15589	15589		
PDGPGGGPGGSHMGGNYGDDR	21	Unmodified	_PDGPGGGPGGSHMGGNYGDDR_			0	0	0	P35637	P35637	P35637	FUS	RNA-binding protein FUS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.934493	1955.78165	2.1121	0.0013791	0.67736	0.00044227	2.7895	0.0018213	652.93496740811	3.8204	0.1242	3.8204	3.7672	3.8914	0	675	37	0.871889544407995	0.0244161317005186	0.871889544407995	527.517155406793	0	14.7724312366202						373	15	5	NaN	NaN	NaN	2.4547E-08	1	30808	78.71	77.236	1	122520			15590	977	13106	13489	15590	15590		
PDIDAWELR	9	Unmodified	_PDIDAWELR_			0	0	0	P20674	P20674	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.780013	1113.54547	-0.51044	-0.00028471	0.50575	0.0002821	-0.0046838	-2.6125E-06	557.780188110383	11.979	0.15074	11.979	11.944	12.094	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	364.261718136932	0	8.23451113681796						306	18	3	NaN	NaN	NaN	0.00015349	1	7073	65.404	37.668	1	111250			15591	783	13107	13490	15591	15591		
PDLGTLENVHGLDPNTWK	18	Unmodified	_PDLGTLENVHGLDPNTWK_			0	0	0	P48739	P48739	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.337445	2004.9905	-0.011968	-8.0103E-06	-0.28976	-0.00019395	-0.30173	-0.00020196	669.671565520845	13.966	0.15074	13.966	13.868	14.019	0	663	49	0.880024865079826	0.0325322604149904	0.880024865079826	532.347257153583	0	19.67951166852						333	18	2	NaN	NaN	NaN	8.7186E-05	1	31719	54.912	49.525	1	127650			15592	1118	13108	13491	15592	15592		
PDLLDFTFEGK	11	Unmodified	_PDLLDFTFEGK_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.321711	1280.62887	-0.32614	-0.00020916	-2.2803	-0.0014624	-2.6064	-0.0016715	641.320428711731	16.75	0.15073	16.75	16.679	16.83	0	576	31	0.938871150116794	0.0202538779292779	0.938871150116794	380.100031801263	0	8.19974034142996						333	18	3	NaN	NaN	NaN	0.0039667	1	11770	78.932	72.668	1	109170			15593	1277	13109	13492	15593	15593		
PDNFLMGIGR	10	Unmodified	_PDNFLMGIGR_			0	0	0	P48729	P48729	P48729	CSNK1A1	Casein kinase I isoform alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.284408	1118.55426	0.91835	0.00051453	-1.0142	-0.00056824	-0.095853	-5.3705E-05	560.282550446624	12.919	0.14189	12.919	12.893	13.034	0	639	31	0.896281965493857	0.020312920651839	0.896281965493857	363.418318798354	0	8.23634498671191						126	17	2	NaN	NaN	NaN	0.067171	1	7223	29.31	15.315	1	29383			15594	1116	13110	13493	15594	15594		
PDPSGECNPDLR	12	Unmodified	_PDPSGECNPDLR_			0	0	0	Q09028;Q16576	Q09028;Q16576	Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.796066	1355.57758	2.8572	0.0019395	-1.4338	-0.00097325	1.4234	0.00096623	678.795441892717	4.0686	0.26605	4.0686	4.0066	4.2726	0	531	64	0.969216233931596	0.0424654908030729	0.969216233931596	392.153601899096	0	17.1819193610548						651	31	5	NaN	NaN	NaN	1.3729E-07	1	14053	136.94	129.79	1	217610			15595	1582;1890	13111	13494	15595	15595		
PDQALQQMLDR	11	Unmodified	_PDQALQQMLDR_			0	0	0	Q9NX47	Q9NX47	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.827169	1313.63978	1.281	0.00084268	-1.9274	-0.0012679	-0.64639	-0.00042521	657.824381469248	10.374	0.18619	10.374	10.294	10.48	0	525	55	0.973257487423603	0.0363914316100816	0.973257487423603	393.915599959045	0	14.729044267619						289	22	2	NaN	NaN	NaN	0.00074106	1	12757	81.799	66.217	1	88008			15596	3096	13112	13495	15596	15596		
PDQFTYTSDHFETIMK	16	Unmodified	_PDQFTYTSDHFETIMK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.964619	1958.87203	0.51115	0.00033427	0.76834	0.00050247	1.2795	0.00083674	653.964824943709	11.749	0.097532	11.749	11.713	11.811	0	582	43	0.934820374997243	0.028363289192291	0.934820374997243	565.585757577488	0	17.1603795063395						258	12	5	NaN	NaN	NaN	0.000899	1	30873	108.91	100.11	1	134150			15597	565	13113	13496	15597	15597		
PDVTYSDVGGCK	12	Unmodified	_PDVTYSDVGGCK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.290085	1296.56562	1.441	0.00093564	1.1713	0.00076052	2.6123	0.0016962	649.290838421878	5.2125	0.088665	5.2125	5.177	5.2657	0	567	22	0.944945209309785	0.0141708428887385	0.944945209309785	382.508910965339	0	5.73628357224175						116	11	3	NaN	NaN	NaN	0.00037081	1	12243	108.93	96.102	1	21174			15598	981	13114	13497	15598	15598		
PDVVITEK	8	Unmodified	_PDVVITEK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.755475	899.496398	-0.060438	-2.7243E-05	-2.625	-0.0011832	-2.6854	-0.0012105	450.754855778964	4.8312	0.14187	4.8312	4.7691	4.911	0	768	22	0.808687310729125	0.0142992632781638	0.808687310729125	328.871244958441	0	5.81512341530163						130	17	2	NaN	NaN	NaN	0.039947	1	2315	48.157	24.582	1	57478			15599	1129	13115	13498	15599	15599		
PDYDPEK	7	Unmodified	_PDYDPEK_			0	0	0	Q9UP83	Q9UP83	Q9UP83	COG5	Conserved oligomeric Golgi complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.192708	862.370863	-1.9094	-0.00082521	0.82594	0.00035696	-1.0834	-0.00046825	432.19295251974	7.4649	0.2394	7.4649	7.4028	7.6422	0	789	40	0.794378096728713	0.026585355643111	0.794378096728713	323.261070447945	0	10.8185391299457						522	28	3	NaN	NaN	NaN	0.053579	1	1747	49.058	31.364	1	257750			15600	3310	13116	13499	15600	15600		
PEEVLVVENDQGEVVR	16	Unmodified	_PEEVLVVENDQGEVVR_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.962705	1809.91086	2.1704	0.0019663	-1.5121	-0.0013699	0.6582	0.00059631	905.962140754539	10.055	0.12412	10.055	10.002	10.126	0	318	46	1.11199926528787	0.0300117972178613	1.11199926528787	448.783014854643	0	12.1122245824067						274	15	3	NaN	NaN	NaN	1.5532E-08	1	27476	135.13	130.32	1	64813			15601	135	13117	13500	15601	15601		
PEFLEDPSVLTK	12	Unmodified	_PEFLEDPSVLTK_			0	0	0	P42167;P42166	P42167;P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.8612	1373.70785	2.0494	0.0014097	-0.15065	-0.00010362	1.8987	0.0013061	687.861206268082	12.795	0.29266	12.795	12.715	13.008	0	477	58	1.0055473068722	0.0383044341449628	1.0055473068722	406.799270697163	0	15.4962534016501						1138	34	5	NaN	NaN	NaN	1.4482E-16	1	14625	165.39	131.67	1	734770			15602	1042;1043	13118	13501	15602	15602		
PEGLPHISDVVLDK	14	Unmodified	_PEGLPHISDVVLDK_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.943596	1517.80896	-1.2185	-0.00061773	0.24545	0.00012443	-0.97308	-0.0004933	506.943678626534	11.775	0.23943	11.775	11.607	11.846	0	723	37	0.839303037468863	0.024467056718703	0.839303037468863	508.83133034398	0	14.8332657740931						378	28	3	NaN	NaN	NaN	0.0020655	1	19071	46.358	43.256	1	95054			15603	1544	13119	13502	15603	15603		
PEINTNHLDK	10	Unmodified	_PEINTNHLDK_			0	0	0	Q13907	Q13907	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	394.20341	1179.5884	-0.78636	-0.00030999	0.69124	0.00027249	-0.095121	-3.7497E-05	394.203549705608	3.3592	0.15083	3.3592	3.3326	3.4834	0	867	25	0.741107305531458	0.0164207262913015	0.741107305531458	450.460258443144	0	9.98085507158697						191	18	3	NaN	NaN	NaN	0.056437	1	8870	34.953	26.77	1	49922			15604	1710	13120	13503	15604	15604		
PEIVDTCSLASPASVCR	17	Unmodified	_PEIVDTCSLASPASVCR_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.442768	1860.87098	2.1471	0.0019999	0.079759	7.4291E-05	2.2269	0.0020742	931.443727746442	10.605	0.18621	10.605	10.516	10.702	0	294	55	1.12800004657306	0.0359968140029667	1.12800004657306	455.145826553855	0	14.5246444913374						505	22	4	NaN	NaN	NaN	8.9409E-05	1	28708	78.157	62.629	1	94466			15605	614	13121	13504	15605	15605		
PELLAIR	7	Unmodified	_PELLAIR_			0	0	0	P43487	P43487	P43487	RANBP1	Ran-specific GTPase-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.255446	810.496338	-2.6504	-0.0010768	-0.20142	-8.1829E-05	-2.8519	-0.0011586	406.255425578191	9.3455	0.088671	9.3455	9.31	9.3987	0	816	25	0.775960037304758	0.0163818703508136	0.775960037304758	316.082367654171	0	6.67305030949058						110	11	2	NaN	NaN	NaN	0.019864	1	1095	64.547	0	1	22052			15606	1066	13122	13505	15606	15606		
PEMNVVLK	8	Unmodified	_PEMNVVLK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.259871	928.505189	-0.47782	-0.00022231	0.33984	0.00015811	-0.13798	-6.4198E-05	465.260153682326	7.3496	0.0798	7.3496	7.3142	7.394	0	726	13	0.837263974740672	0.00815455099452034	0.837263974740672	340.332597216229	0	3.31467685559608						49	10	2	NaN	NaN	NaN	0.015784	1	2850	62.88	38.029	1	15939			15607	1277	13123	13506	15607	15607		
PEQAEIR	7	Unmodified	_PEQAEIR_			0	0	0		REV__Q01082	REV__Q01082			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	421.721967	841.429381	-0.86211	-0.00036357	-2.3373	-0.00098569	-3.1994	-0.0013493	421.720937005567	12.884	0.10643	12.884	12.839	12.946	0	816	25	0.775960037304758	0.0163795890035051	0.775960037304758	315.889143803915	0	6.66804229267939						133	13	2	NaN	NaN	NaN	0.020665	1	1443	53.679	30.37	1	34092	+		15608	3493	13124	13507	15608	15608		
PEWMMIHR	8	Unmodified	_PEWMMIHR_			0	0	0	Q14839;Q8TDI0	Q14839	Q14839	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	367.177373	1098.51029	-1.2361	-0.00045386	0.23097	8.4806E-05	-1.0051	-0.00036905	367.177503145835	8.6446	0.062184	8.6446	8.6357	8.6979	0	906	16	0.714399420407021	0.0102808651988332	0.714399420407021	434.596286901225	0	6.25424057455047						46	8	2	NaN	NaN	NaN	0.059145	1	6660	20.659	13.896	1	8732.4			15609	1776	13125	13508	15609	15609		
PEYAYGSAGSLPK	13	Unmodified	_PEYAYGSAGSLPK_			0	0	0	Q13451	Q13451	Q13451	FKBP5	Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.330067	1338.64558	1.2175	0.00081614	0.80804	0.00054165	2.0256	0.0013578	670.329972898351	7.0836	0.12425	7.0836	7.0214	7.1457	0	480	40	1.00353128488872	0.0262046696285547	1.00353128488872	406.089605936643	0	10.6039982244696						208	15	3	NaN	NaN	NaN	0.055976	1	13552	33.1	23.586	1	48072			15610	1670	13126	13509	15610	15610		
PEYAYGSAGSPPK	13	Unmodified	_PEYAYGSAGSPPK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.314417	1322.61428	2.1398	0.0014172	-0.28942	-0.00019168	1.8504	0.0012255	662.314078625099	4.645	0.37241	4.645	4.4765	4.8489	0	528	76	0.971237000454584	0.0505331828608568	0.971237000454584	393.070059060404	0	20.4513225529199						1048	43	4	NaN	NaN	NaN	0.020157	1	13060	61.577	55.314	1	305520			15611	1530	13127	13510	15611	15611		
PFAIDIFPVTNK	12	Unmodified	_PFAIDIFPVTNK_			0	0	0	Q8NBJ7	Q8NBJ7	Q8NBJ7	SUMF2	Sulfatase-modifying factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.37682	1360.73909	0.077937	5.3104E-05	-1.9254	-0.0013119	-1.8474	-0.0012588	681.375253409337	16.901	0.25716	16.901	16.785	17.043	0	492	40	0.995464410099171	0.0262191597817407	0.995464410099171	402.758430481259	0	10.6081016409007						624	30	4	NaN	NaN	NaN	9.2265E-06	1	14237	141.29	117.17	1	257890			15612	2290	13128	13511	15612	15612		
PFAQQCQDLVK	11	Unmodified	_PFAQQCQDLVK_			0	0	0	Q9NXE4	Q9NXE4	Q9NXE4	SMPD4	Sphingomyelin phosphodiesterase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.332087	1332.64962	1.5608	0.0010415	2.1242	0.0014176	3.685	0.0024591	667.334026981479	6.6934	0.14183	6.6934	6.658	6.7998	0	480	28	1.00353128488872	0.0181441995838212	1.00353128488872	406.108270010258	0	7.34258075922725						223	17	3	NaN	NaN	NaN	0.0022819	1	13371	63.397	50.124	1	48656			15613	3101	13129	13512	15613	15613		
PFCVILPEIQKPER	14	Unmodified	_PFCVILPEIQKPER_			0	0	1	P61619	P61619	P61619	SEC61A1	Protein transport protein Sec61 subunit alpha isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.983397	1724.92836	-0.010993	-6.3318E-06	-0.52866	-0.0003045	-0.53965	-0.00031083	576.31727959294	13.309	0.22172	13.309	13.167	13.389	0	630	43	0.902373728295776	0.0284302042688603	0.902373728295776	546.474902689037	0	17.2172489336508						571	26	4	NaN	NaN	NaN	0.010316	1	25195	48.701	44.173	1	165860			15614	1348	13130	13513	15614	15614		
PFDAFTDLK	9	Unmodified	_PFDAFTDLK_			0	0	0	CON__Q3ZBS7;P04004	CON__Q3ZBS7	CON__Q3ZBS7	VTN	Vitronectin;Vitronectin V65 subunit;Vitronectin V10 subunit;Somatomedin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.266207	1052.51786	-0.0087528	-4.6151E-06	0.19492	0.00010277	0.18617	9.8159E-05	527.266165434632	12.077	0.15963	12.077	12.024	12.183	0	642	43	0.894250814548268	0.0284420373903148	0.894250814548268	362.871527764137	0	11.5412872905929						428	19	4	NaN	NaN	NaN	0.0041621	1	5529	76.605	47.503	1	153940		+	15615	43	13131	13514	15615	15615		
PFDLVIPFAVR	11	Unmodified	_PFDLVIPFAVR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.368798	1272.72304	0.29779	0.00018981	-1.644	-0.0010478	-1.3462	-0.00085802	637.367626886733	18.869	0.14185	18.869	18.825	18.967	0	570	79	0.942920803299286	0.0525945332540456	0.942920803299286	381.764823228889	0	21.2941984313858						676	17	4	NaN	NaN	NaN	0.00023781	1	11579	100.84	88.24	1	335120			15616	326	13132	13515	15616	15616		
PFEDASFALR	10	Unmodified	_PFEDASFALR_			0	0	0	Q13526	Q13526	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.787838	1151.56112	0.42696	0.00024627	-0.4102	-0.0002366	0.016762	9.6679E-06	576.787795638206	11.225	0.29266	11.225	11.092	11.385	0	645	76	0.892219381832517	0.0507506493356152	0.892219381832517	361.644794350984	0	20.57084671761						845	34	3	NaN	NaN	NaN	1.4347E-05	1	8108	122.44	71.005	1	295880			15617	1678	13133	13516	15617	15617		
PFEVPFLK	8	Unmodified	_PFEVPFLK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.778754	975.542954	-0.079274	-3.8747E-05	-0.47769	-0.00023348	-0.55696	-0.00027223	488.778677559427	15.384	0.50554	15.384	15.171	15.677	0	711	61	0.847456455381371	0.0407841082438385	0.847456455381371	344.233364505889	0	16.5663388484438						1664	58	4	NaN	NaN	NaN	0.00064412	1	3751	105.04	80.189	1	1773800			15618	3264	13134	13517	15618	15618		
PFFDICTSR	9	Unmodified	_PFFDICTSR_			0	0	0	O60942	O60942	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5-triphosphatase;mRNA guanylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.768591	1141.52263	0.13699	7.8325E-05	4.7937	0.0027409	4.9307	0.0028192	571.772047608424	11.784	0.14189	11.784	11.74	11.882	0	606	34	0.918606045818476	0.0222962488144068	0.918606045818476	372.378866477407	0	9.03831615086904						154	17	3	NaN	NaN	NaN	0.07068	1	7825	19.256	10.493	1	28652			15619	297	13135	13518	15619	15619		
PFFHSLSEK	9	Unmodified	_PFFHSLSEK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	364.522192	1090.54475	-0.3386	-0.00012343	-0.098114	-3.5765E-05	-0.43672	-0.00015919	364.522079888614	6.3742	0.59405	6.3742	6.321	6.9151	0	867	82	0.741107305531458	0.0554238601096849	0.741107305531458	450.884429225272	0	33.7194834600855						1889	68	5	NaN	NaN	NaN	0.00097673	1	6474	98.009	62.376	1	2055200			15620	628	13136	13519	15620	15620		
PFFHSLSEK	9	Unmodified	_PFFHSLSEK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.279649	1090.54475	1.5278	0.00083461	1.4424	0.00078795	2.9702	0.0016226	546.280388562222	6.3742	0.52315	6.3742	6.3121	6.8353	0	621	64	0.908462957275599	0.0426068992773934	0.908462957275599	368.472515903406	0	17.2813555531923						1371	60	5	NaN	NaN	NaN	6.6613E-09	1	6476	163.2	138.35	1	2761700			15621	628	13136	13519	15621	15621		
PFGSEEQLLPVEK	13	Unmodified	_PFGSEEQLLPVEK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.885207	1471.75586	1.1114	0.00081896	0.31566	0.0002326	1.427	0.0010516	736.885576674445	11.811	0.19509	11.811	11.704	11.899	0	456	82	1.01965166402748	0.0543349840639751	1.01965166402748	412.231332276533	0	21.966896794387						1106	23	4	NaN	NaN	NaN	6.0001E-17	1	17650	197.3	169.71	1	375070			15622	350	13137	13520	15622	15622		
PFGVALLFGGVDEK	14	Unmodified	_PFGVALLFGGVDEK_			0	0	0	P28066	P28066	P28066	PSMA5	Proteasome subunit alpha type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.892835	1447.77112	1.1993	0.00086938	-0.15905	-0.00011529	1.0403	0.00075409	724.893226329383	18.417	0.30154	18.417	18.257	18.559	0	459	76	1.01763759082241	0.0503379607002921	1.01763759082241	411.480547485756	0	20.3540944389971						1108	35	5	NaN	NaN	NaN	2.8181E-07	1	16924	124.46	102.45	1	504370			15623	872	13138	13521	15623	15623		
PFHFQISNPEFAFLR	15	Unmodified	_PFHFQISNPEFAFLR_			0	0	0	P19174	P19174	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.317656	1848.93114	-1.7246	-0.0010646	0.52692	0.00032528	-1.1977	-0.00073936	617.317690067122	16.75	0.070943	16.75	16.723	16.794	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	517.875282222284	0	12.3273418602022						117	9	2	NaN	NaN	NaN	0.0013738	1	28468	58.889	58.082	1	30520			15624	762	13139	13522	15624	15624		
PFIFVDDVK	9	Unmodified	_PFIFVDDVK_			0	0	0	Q12765	Q12765	Q12765	SCRN1	Secernin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.292225	1078.5699	0.021589	1.1665E-05	-0.60083	-0.00032463	-0.57924	-0.00031296	540.292046571836	13.416	0.17739	13.416	13.336	13.513	0	657	49	0.884090832094921	0.0325322604149904	0.884090832094921	358.636860155852	0	13.1969106628537						341	21	3	NaN	NaN	NaN	0.0036279	1	6179	62.969	47.47	1	100150			15625	1591	13140	13523	15625	15625		
PFIPLVEK	8	Unmodified	_PFIPLVEK_			0	0	0	Q9H993	Q9H993	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.786579	941.558604	-0.98387	-0.00046418	-0.24085	-0.00011363	-1.2247	-0.00057781	471.786522359898	11.899	0.1153	11.899	11.855	11.97	0	672	43	0.873923798053065	0.0284815345298798	0.873923798053065	355.162334051957	0	11.5748859380521						302	14	3	NaN	NaN	NaN	0.0029631	1	3094	75.243	56.841	1	81376			15626	2930	13141	13524	15626	15626		
PFITYHNELDMNLYMR	16	Unmodified	_PFITYHNELDMNLYMR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.325494	2055.95465	0.13512	9.2735E-05	-0.80119	-0.00054988	-0.66607	-0.00045714	686.65920755625	14.48	0.20394	14.48	14.444	14.648	0	630	25	0.902373728295776	0.0162435754430814	0.902373728295776	545.773641192564	0	9.8244386306543						268	24	4	NaN	NaN	NaN	0.00012616	1	32635	35.45	31.143	1	45630			15627	1801	13142	13525	15627	15627		
PFLEKADK	8	Unmodified	_PFLEKADK_			0	0	1	O60563	O60563	O60563	CCNT1	Cyclin-T1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.263468	946.512382	0.3304	0.0001567	-0.29701	-0.00014086	0.033392	1.5837E-05	474.263537026656	9.7534	0.28374	9.7534	9.6824	9.9662	0	726	43	0.837263974740672	0.0285488687394279	0.837263974740672	340.23817494824	0	11.6013769728338						747	33	4	NaN	NaN	NaN	0.036564	1	3183	66.087	23.858	1	547470			15628	266	13143	13526	15628	15628		
PFLEMVAK	8	Unmodified	_PFLEMVAK_			0	0	0		REV__Q16531	REV__Q16531			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.756964	933.499375	-0.76268	-0.00035675	7.6722	0.0035887	6.9095	0.003232	467.7605096902	13.265	0.15962	13.265	13.212	13.371	0	711	37	0.847456455381371	0.0244568589772431	0.847456455381371	344.448745594755	0	9.94049233138264						316	19	3	NaN	NaN	NaN	0.0146	1	2940	51.456	29.528	1	109010	+		15629	3495	13144	13527	15629	15629		
PFLFDTK	7	Unmodified	_PFLFDTK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.234179	866.453805	-2.1356	-0.00092736	0.38107	0.00016547	-1.7546	-0.00076189	434.234354799798	11.225	0.39023	11.225	11.154	11.545	0	792	79	0.792332785124922	0.0532188796190745	0.792332785124922	322.40496890523	0	21.6550817420153						1314	45	4	NaN	NaN	NaN	0.0055705	1	1808	109.11	84.288	1	1101200			15630	870	13145	13528	15630	15630		
PFLFLLK	7	Unmodified	_PFLFLLK_			0	0	0	Q13535	Q13535	Q13535	ATR	Serine/threonine-protein kinase ATR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.280932	876.547311	-4.079	-0.0017918	1.0302	0.00045255	-3.0488	-0.0013393	439.2814858517	17.06	0.097527	17.06	17.025	17.122	0	771	22	0.806643990516186	0.0143032423211241	0.806643990516186	328.169358844261	0	5.81903034932884						107	12	2	NaN	NaN	NaN	0.020912	1	1965	60.001	22.586	1	21936			15631	1679	13146	13529	15631	15631		
PFLGIGLK	8	Unmodified	_PFLGIGLK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.768189	843.521825	-1.2046	-0.00050926	-0.60231	-0.00025464	-1.8069	-0.0007639	422.767960963506	12.804	0.31924	12.804	12.742	13.061	0	789	61	0.794378096728713	0.0409204901852094	0.794378096728713	323.374164373881	0	16.657847659577						863	37	4	NaN	NaN	NaN	0.0026707	1	1475	84.064	27.173	1	880250			15632	1780	13147	13530	15632	15632		
PFLLPVEAVYSVPGR	15	Unmodified	_PFLLPVEAVYSVPGR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.643369	1642.90828	-0.53038	-0.00029099	0.068206	3.7421E-05	-0.46217	-0.00025357	548.97773978578	17.885	0.10639	17.885	17.832	17.938	0	618	25	0.910492137470517	0.0162345681702797	0.910492137470517	551.610515507278	0	9.83551438711447						234	13	4	NaN	NaN	NaN	0.0034373	1	22845	44.598	44.446	1	58465			15633	1131	13148	13531	15633	15633		
PFLLPVEAVYSVPGR	15	Unmodified	_PFLLPVEAVYSVPGR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.461416	1642.90828	1.1749	0.0009663	0.59307	0.00048777	1.768	0.0014541	822.461831365853	17.876	0.09752	17.876	17.832	17.929	0	231	73	1.16991841121525	0.0478704989702736	1.16991841121525	472.522917474423	0	19.3346028385806						465	12	4	NaN	NaN	NaN	0.00014368	1	22846	74.524	67.668	1	128890			15634	1131	13148	13531	15634	15634		
PFLLPVEAVYSVPGR	15	Unmodified	_PFLLPVEAVYSVPGR_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.461416	1642.90828	1.8634	0.0015326	1.5622	0.0012849	3.4256	0.0028175	822.463015516874	17.876	0.30145	17.876	17.787	18.089	0	360	97	1.08395544855938	0.0641709123177354	1.08395544855938	437.802997114491	0	25.9182402538904						2035	35	6	NaN	NaN	NaN	2.9276E-17	1	22847	160.62	154.59	1	1960800			15635	1131	13148	13531	15635	15635		
PFLNGLTGK	9	Unmodified	_PFLNGLTGK_			0	0	0	P62306	P62306	P62306	SNRPF	Small nuclear ribonucleoprotein F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.77146	945.528367	-0.82712	-0.00039186	0.10454	4.953E-05	-0.72257	-0.00034233	473.77199376286	9.5672	0.23053	9.5672	9.4962	9.7268	0	738	34	0.829104889055312	0.0224421675628655	0.829104889055312	336.927591540635	0	9.11993834039885						292	27	3	NaN	NaN	NaN	0.013139	1	3171	58.426	24.613	1	100830			15636	1382	13149	13532	15636	15636		
PFLPQLQTTFTK	12	Unmodified	_PFLPQLQTTFTK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.895377	1419.7762	1.5305	0.001088	-2.0696	-0.0014712	-0.53905	-0.00038321	710.894281759385	14.577	0.18621	14.577	14.515	14.701	0	462	40	1.01562323939346	0.0261865738228477	1.01562323939346	410.742686834673	0	10.5904859930288						454	22	4	NaN	NaN	NaN	0.00037622	1	16095	75.474	47.738	1	193850			15637	2420	13150	13533	15637	15637		
PFLWLAR	7	Unmodified	_PFLWLAR_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.765981	901.517408	-1.3372	-0.00060411	-0.037162	-1.6788E-05	-1.3744	-0.0006209	451.765992850845	14.781	0.72714	14.781	14.693	15.42	0	759	79	0.814815566123307	0.0531005091462049	0.814815566123307	331.352258725927	0	21.5938113809046						2356	83	5	NaN	NaN	NaN	0.00027197	1	2355	129.52	106.21	1	4886300			15638	1399	13151	13534	15638	15638		
PFMTGAAEQIK	11	Oxidation (M)	_PFM(Oxidation (M))TGAAEQIK_	PFM(1)TGAAEQIK	PFM(170)TGAAEQIK	0	1	0	P13693;Q56UQ5	P13693	P13693	TPT1	Translationally-controlled tumor protein;TPT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.802631	1207.59071	1.257	0.00076025	-1.0567	-0.00063909	0.20034	0.00012117	604.801985043943	5.6203	0.16853	5.6203	5.576	5.7445	0	630	37	0.902373728295776	0.0243619867259138	0.902373728295776	365.559784912187	0	9.8692618682262						354	20	3	NaN	NaN	NaN	4.2221E-11	1	9670	166.66	137.56	1	105640			15639	682	13152	13535	15639	15639	218	
PFNLETCR	8	Unmodified	_PFNLETCR_			0	0	0	P30626	P30626	P30626	SRI	Sorcin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.747659	1035.48076	1.0113	0.00052461	1.224	0.00063496	2.2353	0.0011596	518.748286961706	6.8619	0.27482	6.8619	6.7732	7.0481	0	684	46	0.86578508874114	0.0305307631752075	0.86578508874114	351.395260757308	0	12.3914879415061						581	32	3	NaN	NaN	NaN	0.0019123	1	5120	92.677	57.745	1	275810			15640	915	13153	13536	15640	15640		
PFNPLLGETYELVR	14	Unmodified	_PFNPLLGETYELVR_			0	0	0	Q9BXW6	Q9BXW6	Q9BXW6	OSBPL1A	Oxysterol-binding protein-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.44068	1646.86681	0.3593	0.00029622	0.11298	9.3148E-05	0.47229	0.00038937	824.440570491594	16.794	0.097535	16.794	16.759	16.856	0	387	34	1.06589869032374	0.0220815471089169	1.06589869032374	430.501334340864	0	8.91842309311039						206	12	3	NaN	NaN	NaN	1.3242E-07	1	22951	112.7	110.99	1	49339			15641	2789	13154	13537	15641	15641		
PFPWGDGNHTLFHNPHVNPLPTGYEDE	27	Unmodified	_PFPWGDGNHTLFHNPHVNPLPTGYEDE_			0	0	0	P12074	P12074	P12074	COX6A1	Cytochrome c oxidase subunit 6A1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	772.60596	3086.39473	1.5471	0.0011953	-0.35082	-0.00027104	1.1963	0.00092424	772.856433683372	14.506	0.22169	14.506	14.427	14.648	0	486	70	0.999498404980629	0.0464262587282713	0.999498404980629	804.214607553171	0	37.3554127322918						1448	26	5	NaN	NaN	NaN	3.2114E-06	1	38336	66.106	65.145	1	304190			15642	663	13155	13538	15642	15642		
PFQEYLEAQR	10	Unmodified	_PFQEYLEAQR_			0	0	0	Q96GC9	Q96GC9	Q96GC9	VMP1	Vacuole membrane protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.817127	1279.6197	1.1985	0.00076799	-5.0861	-0.0032593	-3.8877	-0.0024913	640.813756328494	9.0706	0.088689	9.0706	9.0174	9.106	0	549	19	0.957085760909907	0.0121338311529138	0.957085760909907	387.477451241547	0	4.91239778184189						98	11	4	NaN	NaN	NaN	0.0006179	1	11741	99.855	67.903	1	78975			15643	2539	13156	13539	15643	15643		
PFQTLMFLVR	10	Unmodified	_PFQTLMFLVR_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.349551	1250.68455	0.5026	0.0003148	-1.5681	-0.00098217	-1.0655	-0.00066737	626.348753599343	17.637	0.1596	17.637	17.592	17.752	0	567	31	0.944945209309785	0.020242660886354	0.944945209309785	382.656813444582	0	8.1972923235088						344	19	4	NaN	NaN	NaN	6.7171E-06	1	10945	108.3	95.029	1	105090			15644	2029	13157	13540	15644	15644		
PFRLDLLEDR	10	Unmodified	_PFRLDLLEDR_			0	0	1	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.234822	1272.68264	-1.0339	-0.00043967	-1.7519	-0.00074498	-2.7859	-0.0011846	425.233814921491	12.919	0.070942	12.919	12.893	12.963	0	840	22	0.759569036796863	0.0143491209396079	0.759569036796863	461.291725805222	0	8.71432409874524						101	9	2	NaN	NaN	NaN	0.00028019	1	11577	76.572	60.115	1	24079			15645	1771	13158	13541	15645	15645		
PFSLQETYEAK	11	Unmodified	_PFSLQETYEAK_			0	0	0	Q14141;Q9NVA2	Q14141	Q14141	SEPT6;SEPT11	Septin-6;Septin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.824618	1311.63468	1.2287	0.00080707	2.3482	0.0015424	3.577	0.0023494	656.825927682809	9.1238	0.15075	9.1238	9.0617	9.2125	0	510	31	0.983355730988811	0.0201867152025123	0.983355730988811	398.00907133521	0	8.17048756402841						302	18	4	NaN	NaN	NaN	2.1547E-07	1	12706	117.99	105.39	1	110670			15646	1725	13159	13542	15646	15646		
PFSTVDR	7	Unmodified	_PFSTVDR_			0	0	0	Q8NI99	Q8NI99	Q8NI99	ANGPTL6	Angiopoietin-related protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.211235	820.407917	-2.1082	-0.00086692	-0.65866	-0.00027085	-2.7669	-0.0011378	411.210956238046	9.4519	0.22167	9.4519	9.3632	9.5849	0	840	40	0.759569036796863	0.026644658335389	0.759569036796863	309.343455690439	0	10.8513516031651						411	26	2	NaN	NaN	NaN	0.015457	1	1204	64.547	10.491	1	270860			15647	2331	13160	13543	15647	15647		
PFVEEVIDNK	10	Unmodified	_PFVEEVIDNK_			0	0	0	Q92990	Q92990	Q92990	GLMN	Glomulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.308603	1188.60265	1.0769	0.00064109	4.7659	0.0028372	5.8428	0.0034783	595.312120946459	10.002	0.15073	10.002	9.913	10.064	0	531	34	0.969216233931596	0.0222345870481429	0.969216233931596	392.709125794203	0	9.00905797527901						233	18	3	NaN	NaN	NaN	3.6856E-07	1	9118	95.311	72.925	1	52274			15648	2451	13161	13544	15648	15648		
PFVPNVHAAEFVPSFLR	17	Unmodified	_PFVPNVHAAEFVPSFLR_			0	0	0	Q8IYD1	Q8IYD1	Q8IYD1	GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.012344	1926.0152	-0.42169	-0.00027115	-1.1142	-0.00071641	-1.5358	-0.00098757	643.34597065496	16.741	0.25717	16.741	16.617	16.874	0	675	190	0.871889544407995	0.12787441709362	0.871889544407995	527.574544359642	0	77.3759563537698						2875	30	5	NaN	NaN	NaN	3.2881E-10	1	30197	146.37	116.3	1	1092800			15649	2224	13162	13545	15649	15649		
PFYVVAESFK	10	Unmodified	_PFYVVAESFK_			0	0	0	Q14232	Q14232	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.810782	1185.60701	0.63404	0.0003765	0.81614	0.00048463	1.4502	0.00086113	593.811055924347	12.556	0.16847	12.556	12.502	12.671	0	570	46	0.942920803299286	0.0303703038284173	0.942920803299286	382.065780091846	0	12.30586257428						489	20	4	NaN	NaN	NaN	0.0067755	1	9024	76.605	55.946	1	152200			15650	1738	13163	13546	15650	15650		
PGAAMVEMADGYAVDR	16	Unmodified	_PGAAMVEMADGYAVDR_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.87399	1651.73343	2.3303	0.0019268	0.25181	0.00020822	2.5821	0.002135	826.874662970919	11.181	0.23058	11.181	11.128	11.358	0	390	58	1.06389100039157	0.038135606006148	1.06389100039157	429.679894339565	0	15.4020507300711						885	27	5	NaN	NaN	NaN	2.3866E-05	1	23092	88.42	75.245	1	345730			15651	704	13164	13547	15651	15651		
PGAEQSFLYGNHVLK	15	Unmodified	_PGAEQSFLYGNHVLK_			0	0	0	Q9Y221	Q9Y221	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.954495	1658.84166	-0.4945	-0.00027393	0.0067378	3.7325E-06	-0.48776	-0.0002702	553.95456863108	9.4342	0.16846	9.4342	9.3898	9.5583	0	705	37	0.851531465363931	0.0244500640244978	0.851531465363931	515.848525638398	0	14.811583590057						447	20	5	NaN	NaN	NaN	0.0013191	1	23293	75.474	70.947	1	240220			15652	3323	13165	13548	15652	15652		
PGAEQSFLYGNHVLK	15	Unmodified	_PGAEQSFLYGNHVLK_			0	0	0	Q9Y221	Q9Y221	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.428104	1658.84166	2.1885	0.0018174	0.67393	0.00055965	2.8625	0.0023771	830.428776405924	9.443	0.088678	9.443	9.4076	9.4962	0	273	40	1.14198628764525	0.0259637344402126	1.14198628764525	461.204253561461	0	10.4857517920444						303	11	4	NaN	NaN	NaN	0.00017217	1	23294	63.908	57.532	1	71456			15653	3323	13165	13548	15653	15653		
PGAFDLEQVK	10	Unmodified	_PGAFDLEQVK_			0	0	0	O00411	O00411	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.290214	1102.56587	0.29464	0.00016272	-2.2573	-0.0012467	-1.9627	-0.001084	552.789067237158	9.5583	0.22161	9.5583	9.4874	9.709	0	630	55	0.902373728295776	0.0365531253994683	0.902373728295776	365.952950070599	0	14.8239289939206						424	26	3	NaN	NaN	NaN	0.071761	1	6786	15.879	8.7288	1	100130			15654	75	13166	13549	15654	15654		
PGAFIAGVPVQPVLIR	16	Unmodified	_PGAFIAGVPVQPVLIR_			0	0	0	Q643R3	Q643R3	Q643R3	LPCAT4	Lysophospholipid acyltransferase LPCAT4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.49305	1632.97155	1.0624	0.00086848	1.9498	0.0015939	3.0122	0.0024624	817.996520011358	16.386	0.062085	16.386	16.36	16.422	0	333	40	1.10198982404297	0.0260424797711383	1.10198982404297	445.109617406875	0	10.5189339813774						176	8	3	NaN	NaN	NaN	0.0026781	1	22581	46.033	45.07	1	32095			15655	2017	13167	13550	15655	15655		
PGAIVIDCGINYVPDDK	17	Unmodified	_PGAIVIDCGINYVPDDK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.456201	1844.89785	3.2681	0.003018	-1.489	-0.0013751	1.7791	0.0016429	923.956756644222	12.857	0.28379	12.857	12.733	13.017	0	273	91	1.14198628764525	0.0599040020396771	1.14198628764525	460.818771914695	0	24.1726971254796						1253	33	5	NaN	NaN	NaN	3.5116E-05	1	28349	90.156	77.986	1	477830			15656	656	13168	13551	15656	15656		
PGALAEGAAEPEPQR	15	Unmodified	_PGALAEGAAEPEPQR_			0	0	0	Q9NYB0	Q9NYB0	Q9NYB0	TERF2IP	Telomeric repeat-binding factor 2-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.873162	1491.73177	2.5446	0.0019005	-2.6931	-0.0020114	-0.14853	-0.00011093	746.871677399712	5.0883	0.1064	5.0883	5.0529	5.1593	0	444	76	1.02770517576159	0.0503796986704133	1.02770517576159	415.435443881867	0	20.3652885802272						306	13	3	NaN	NaN	NaN	3.3457E-06	1	18292	74.524	61.349	1	71318			15657	3112	13169	13552	15657	15657		
PGANSTTDAVLLNK	14	Unmodified	_PGANSTTDAVLLNK_			0	0	0	Q14643	Q14643	Q14643	ITPR1	Inositol 1,4,5-trisphosphate receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.87263	1399.73071	1.692	0.0011859	-0.42614	-0.00029867	1.2659	0.00088723	700.872394337749	6.9594	0.11528	6.9594	6.9239	7.0392	0	471	25	1.00957851518677	0.0161248344128324	1.00957851518677	408.354452702766	0	6.52217517758572						162	14	3	NaN	NaN	NaN	0.0026622	1	15450	63.908	59.926	1	37561			15658	1759	13170	13553	15658	15658		
PGCEVDDLK	9	Unmodified	_PGCEVDDLK_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.736957	1031.45936	1.354	0.00069966	2.4451	0.0012635	3.7991	0.0019631	516.738035814259	4.2549	0.17738	4.2549	4.2194	4.3968	0	696	43	0.857641857947968	0.0285171523419938	0.857641857947968	348.107975646397	0	11.5748177178797						333	21	3	NaN	NaN	NaN	0.001557	1	5028	67.507	60.745	1	103330			15659	1027	13171	13554	15659	15659		
PGDDIVLMAEALEK	14	Unmodified	_PGDDIVLMAEALEK_			0	0	0	O60885	O60885	O60885	BRD4	Bromodomain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.884349	1499.75415	0.26759	0.00020093	1.7491	0.0013134	2.0167	0.0015143	750.885152473201	17.087	0.12412	17.087	17.034	17.158	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	423.545537179645	0	8.12492862245887						286	15	5	NaN	NaN	NaN	1.1399E-07	1	18519	101.64	85.356	1	64504			15660	292	13172	13555	15660	15660		
PGDGEFVEVISLPK	14	Unmodified	_PGDGEFVEVISLPK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.893032	1485.77151	1.1673	0.00086837	2.2328	0.0016609	3.4001	0.0025293	743.895015589598	14.897	0.22166	14.897	14.852	15.074	0	399	46	1.0578662689527	0.0301319762986474	1.0578662689527	427.64339239168	0	12.1808785684947						955	26	5	NaN	NaN	NaN	1.867E-13	1	18102	138	109.67	1	842040			15661	3264	13173	13556	15661	15661		
PGDLESAPVLR	11	Unmodified	_PGDLESAPVLR_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.31422	1152.61389	1.0061	0.00058083	1.6721	0.00096531	2.6782	0.0015461	577.817006513947	8.0947	0.29285	8.0947	8.0591	8.352	0	606	61	0.918606045818476	0.0405358392902467	0.918606045818476	372.336112013816	0	16.430282455957						359	34	2	NaN	NaN	NaN	3.1441E-05	1	8137	104.39	68.184	1	106310			15662	657	13174	13557	15662	15662		
PGDLGVDLTSK	11	Unmodified	_PGDLGVDLTSK_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.292953	1100.57135	0.51779	0.00028546	-0.4773	-0.00026313	0.040497	2.2326E-05	551.292774929785	8.2632	0.31934	8.2632	8.21	8.5293	0	690	43	0.86171403876517	0.0285013139595033	0.86171403876517	349.47143556881	0	11.558817260652						742	37	4	NaN	NaN	NaN	1.0411E-17	1	6737	212.4	119.67	1	465360			15663	1003	13175	13558	15663	15663		
PGDLHVVLDMAK	12	Unmodified	_PGDLHVVLDMAK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	432.232312	1293.67511	-1.4553	-0.00062901	0.31821	0.00013754	-1.137	-0.00049146	432.232406241555	10.942	0.11531	10.942	10.906	11.021	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	493.517062859825	0	12.4027587231851						202	14	4	NaN	NaN	NaN	0.041534	1	12186	44.57	39.419	1	46292			15664	1923	13176	13559	15664	15664		
PGDLIFAK	8	Unmodified	_PGDLIFAK_			0	0	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.747453	859.480354	-1.9998	-0.00086139	-1.8353	-0.00079054	-3.835	-0.0016519	430.746930909667	8.8221	0.15084	8.8221	8.7334	8.8842	0	792	46	0.792332785124922	0.0306839532114277	0.792332785124922	322.445752298712	0	12.4870642266777						366	18	3	NaN	NaN	NaN	0.016891	1	1709	49.325	29.838	1	144180			15665	336	13177	13560	15665	15665		
PGDLVFAK	8	Unmodified	_PGDLVFAK_			0	0	0	Q7Z4V5	Q7Z4V5	Q7Z4V5	HDGFRP2	Hepatoma-derived growth factor-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.739628	845.464704	-1.2057	-0.0005109	-0.872	-0.0003695	-2.0777	-0.0008804	423.739536873855	7.394	0.27486	7.394	7.261	7.5358	0	804	37	0.78414869089473	0.024562543988738	0.78414869089473	319.198261500017	0	9.9985135858314						440	32	3	NaN	NaN	NaN	0.026266	1	1501	47.349	33.701	1	111160			15666	2141	13178	13561	15666	15666		
PGEAMFLEANVPHAYLK	17	Unmodified	_PGEAMFLEANVPHAYLK_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.653828	1885.93965	0.56588	0.00035631	-1.0626	-0.00066908	-0.49673	-0.00031277	630.320367340429	13.185	0.10641	13.185	13.132	13.238	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	577.990011657491	0	11.0186354181327						240	13	4	NaN	NaN	NaN	0.034755	1	29285	22.142	18.406	1	53400			15667	956	13179	13562	15667	15667		
PGEGHLDALLR	11	Unmodified	_PGEGHLDALLR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	393.21565	1176.62512	-1.4568	-0.00057285	-0.081826	-3.2175E-05	-1.5387	-0.00060503	393.215714198251	7.9881	0.20409	7.9881	7.9172	8.1213	8.8818E-16	813	34	0.778007628350577	0.0225235047805306	0.778007628350577	472.902781195261	0	13.6906473212343						428	24	4	NaN	NaN	NaN	0.0048493	1	8797	61.48	48.653	1	175310			15668	1277	13180	13563	15668	15668		
PGEGHLDALLR	11	Unmodified	_PGEGHLDALLR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.319837	1176.62512	1.3525	0.00079705	-1.6654	-0.00098147	-0.31293	-0.00018442	589.31917904571	7.9881	0.18635	7.9881	7.9172	8.1036	0	612	31	0.914549654013882	0.0202875850561227	0.914549654013882	370.602509914451	0	8.22112819014626						246	22	3	NaN	NaN	NaN	5.5873E-05	1	8798	101.82	76.564	1	101910			15669	1277	13180	13563	15669	15669		
PGEWLVR	7	Unmodified	_PGEWLVR_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.73742	855.460287	-1.246	-0.0005342	-1.1436	-0.00049031	-2.3896	-0.0010245	428.736978564944	8.3342	0.21287	8.3342	8.281	8.4938	0	831	28	0.76571780291124	0.0184411604837688	0.76571780291124	311.637586673029	0	7.50532210007646						246	25	3	NaN	NaN	NaN	0.0018698	1	1643	127.95	106.02	1	80653			15670	2748	13181	13564	15670	15670		
PGFSIADK	8	Unmodified	_PGFSIADK_			0	0	0	P62913	P62913	P62913	RPL11	60S ribosomal protein L11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	417.721436	833.428318	-0.82593	-0.00034501	-0.47742	-0.00019943	-1.3034	-0.00054444	417.721377110876	6.1968	0.32811	6.1968	6.1081	6.4363	0	840	43	0.759569036796863	0.0287002466228565	0.759569036796863	309.264040461282	0	11.6855134988785						742	38	4	NaN	NaN	NaN	0.00053653	1	1355	94.806	62.678	1	660500			15671	1415	13182	13565	15671	15671		
PGGDTIFGK	9	Unmodified	_PGGDTIFGK_			0	0	0	P49773	P49773	P49773	HINT1	Histidine triad nucleotide-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.232168	890.449782	-0.61264	-0.00027338	-0.83436	-0.00037232	-1.447	-0.0006457	446.231859063068	6.2411	0.42566	6.2411	6.1702	6.5959	0	822	49	0.771863999559055	0.0327683119781043	0.771863999559055	313.944135150292	0	13.3280207007683						800	49	4	NaN	NaN	NaN	0.0013369	1	2168	72.038	34.316	1	699270			15672	1149	13183	13566	15672	15672		
PGGILMMDLK	10	Unmodified	_PGGILMMDLK_			0	0	0	Q15165	Q15165	Q15165	PON2	Serum paraoxonase/arylesterase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.787938	1073.56132	0.50011	0.00026895	-1.3205	-0.00071014	-0.82037	-0.00044118	537.787339735104	13.496	0.17735	13.496	13.416	13.593	0	660	52	0.882057989648486	0.0345727248070983	0.882057989648486	357.833279667829	0	14.025462781316						313	21	3	NaN	NaN	NaN	3.2865E-05	1	6042	100.84	67.41	1	170130			15673	1819	13184	13567	15673	15673		
PGGLLLGDVAPNFEANTTVGR	21	Unmodified	_PGGLLLGDVAPNFEANTTVGR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.035766	2097.08547	0.85092	0.00059567	-0.76801	-0.00053763	0.082908	5.8039E-05	700.369205009505	16.049	0.22168	16.049	15.934	16.156	0	507	76	0.985374541851584	0.0505052245201806	0.985374541851584	595.895847159381	0	30.5425523729034						998	26	6	NaN	NaN	NaN	0.00070168	1	33273	77.696	71.492	1	393070			15674	893	13185	13568	15674	15674		
PGGLLLGDVAPNFEANTTVGR	21	Unmodified	_PGGLLLGDVAPNFEANTTVGR_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.55001	2097.08547	2.5295	0.0026549	-0.022101	-2.3196E-05	2.5074	0.0026317	1050.05187113948	16.058	0.50544	16.058	15.916	16.422	0	147	118	1.22562176648663	0.0774539182846026	1.22562176648663	494.123599964575	0	31.2264435739094						3340	58	7	NaN	NaN	NaN	2.564E-11	1	33274	132.01	125.8	1	4254600			15675	893	13185	13568	15675	15675		
PGGNVEGATQSLAEQMR	17	Unmodified	_PGGNVEGATQSLAEQMR_			0	0	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.917775	1743.821	3.2519	0.0028386	-1.1378	-0.00099322	2.114	0.0018454	872.916857186815	9.7356	0.18629	9.7356	9.6913	9.8776	0	351	61	1.08996939197032	0.0400846886199586	1.08996939197032	440.018900779248	0	16.1821247042072						737	22	5	NaN	NaN	NaN	4.1672E-14	1	25711	168.78	150.69	1	312430			15676	1673	13186	13569	15676	15676		
PGGNVEGATQSLAEQMR	17	Oxidation (M)	_PGGNVEGATQSLAEQM(Oxidation (M))R_	PGGNVEGATQSLAEQM(1)R	PGGNVEGATQSLAEQM(56)R	0	1	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.915232	1759.81591	2.8863	0.0025426	-1.801	-0.0015866	1.0853	0.00095605	880.91388905073	6.4008	0.09753	6.4008	6.3653	6.4629	0	363	34	1.08195024817156	0.0220602476695482	1.08195024817156	436.750275042729	0	8.90504831758045						229	12	3	NaN	NaN	NaN	0.0029097	1	26136	55.782	49.406	1	52233			15677	1673	13186	13570	15677	15677	555	
PGGSDFLR	8	Unmodified	_PGGSDFLR_			0	0	0	P56211	P56211	P56211	ARPP19	cAMP-regulated phosphoprotein 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	424.716685	847.418816	-1.2754	-0.00054168	1.5189	0.00064509	0.24347	0.00010341	424.717305364143	5.7623	0.3104	5.7623	5.7091	6.0195	0	795	28	0.790287188799094	0.0184103687161689	0.790287188799094	321.685167082284	0	7.49391185944268						306	36	3	NaN	NaN	NaN	0.041936	1	1521	47.349	36.521	1	106900			15678	1285	13187	13571	15678	15678		
PGGSLDGMDMLHNFLK	16	Unmodified	_PGGSLDGMDMLHNFLK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.944614	1730.81201	-1.0831	-0.00062599	-1.6365	-0.00094579	-2.7196	-0.0015718	577.943954543446	16.652	0.13302	16.652	16.599	16.732	0	693	34	0.85967808974117	0.0223985529654932	0.85967808974117	520.604460455534	0	13.564131412371						455	16	5	NaN	NaN	NaN	1.0547E-06	1	25341	104.04	100.06	1	177650			15679	2804	13188	13572	15679	15679		
PGGSLDGMDMLHNFLK	16	Unmodified	_PGGSLDGMDMLHNFLK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.413282	1730.81201	1.4048	0.0012172	5.0376	0.0043647	6.4425	0.0055818	866.919672369219	16.635	0.13301	16.635	16.581	16.714	0	297	64	1.12600091227925	0.041952970811898	1.12600091227925	454.591691374032	0	16.9373503623027						236	16	3	NaN	NaN	NaN	0.0028313	1	25343	27.357	23.852	1	51459			15680	2804	13188	13572	15680	15680		
PGHLQEGFGCVVTNR	15	Unmodified	_PGHLQEGFGCVVTNR_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.907013	1669.79947	2.7265	0.0022791	-3.0783	-0.0025732	-0.35173	-0.00029402	835.904713684315	7.1989	0.15962	7.1989	7.1545	7.3142	0	372	37	1.07593298845566	0.0240773390598485	1.07593298845566	434.504263544559	0	9.72338109209596						419	19	5	NaN	NaN	NaN	3.1444E-06	1	23614	70.806	64.429	1	149060			15681	2296	13189	13573	15681	15681		
PGHLQEGFGCVVTNR	15	Unmodified	_PGHLQEGFGCVVTNR_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.607101	1669.79947	0.33819	0.00018858	0.36907	0.0002058	0.70726	0.00039438	557.941623762848	7.19	0.15962	7.19	7.1545	7.3142	0	693	94	0.85967808974117	0.0632022336788699	0.85967808974117	520.755384350866	0	38.285148689997						759	19	5	NaN	NaN	NaN	1.4942E-06	1	23615	93.162	87.135	1	229630			15682	2296	13189	13573	15682	15682		
PGHLQFYSLQSDK	13	Unmodified	_PGHLQFYSLQSDK_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.256174	1518.74669	-1.4495	-0.00073528	0.093819	4.759E-05	-1.3557	-0.00068769	507.256381079224	8.2188	0.097614	8.2188	8.1833	8.281	0	801	31	0.78619514174348	0.0204630863651483	0.78619514174348	476.631768614224	0	12.4057711980985						268	12	4	NaN	NaN	NaN	0.0010451	1	19094	74.424	65.95	1	82362			15683	2200	13190	13574	15683	15683		
PGHPECDILTNVFAILSAK	19	Unmodified	_PGHPECDILTNVFAILSAK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.694463	2081.06156	-0.49111	-0.00034117	-0.31329	-0.00021764	-0.8044	-0.00055881	695.028728634146	19.978	0.03549	19.978	19.969	20.004	0	597	16	0.924688525662974	0.0101360618473447	0.924688525662974	559.224853942771	0	6.12999680305575						44	5	3	NaN	NaN	NaN	0.040075	1	33050	25.922	25.842	1	8648.8			15684	351	13191	13575	15684	15684		
PGHYDILYK	9	Unmodified	_PGHYDILYK_			0	0	0	Q96FW1	Q96FW1	Q96FW1	OTUB1	Ubiquitin thioesterase OTUB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.287474	1104.5604	1.2793	0.00070782	2.1587	0.0011944	3.438	0.0019022	553.791597134857	6.0815	0.15075	6.0815	6.0283	6.1791	0	615	31	0.912521036363781	0.0202875850561227	0.912521036363781	370.059868552276	0	8.22734025839918						184	18	2	NaN	NaN	NaN	0.026055	1	6840	43.734	35.552	1	43971			15685	2529	13192	13576	15685	15685		
PGIVELPTLEELK	13	Unmodified	_PGIVELPTLEELK_			0	0	0	P51970	P51970	P51970	NDUFA8	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.4136	1436.81265	0.904	0.00065035	0.39887	0.00028695	1.3029	0.00093731	719.413852971602	16.386	0.22167	16.386	16.28	16.502	0	435	94	1.03374239103424	0.0624535925362395	1.03374239103424	418.022674766832	0	25.2548584901092						985	26	4	NaN	NaN	NaN	0.0030263	1	16597	77.358	69.357	1	393930			15686	1203	13193	13577	15686	15686		
PGLGGSSGLAGAWLK	15	Unmodified	_PGLGGSSGLAGAWLK_			0	0	0	P16455	P16455	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.874976	1369.7354	1.7329	0.0011885	5.6859	0.0038998	7.4187	0.0050883	685.878796811122	13.575	0.13303	13.575	13.522	13.655	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	414.960961405295	0	11.4036430632588						441	16	4	NaN	NaN	NaN	1.0963E-11	1	14492	166.65	132.45	1	136880			15687	729	13194	13578	15687	15687		
PGLIGNANMVGLANLHAMGIAPPK	24	Unmodified	_PGLIGNANMVGLANLHAMGIAPPK_			0	0	0	O43395	O43395	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.092452	2355.25553	0.72797	0.00057225	1.6948	0.0013323	2.4228	0.0019045	786.427376760254	16.315	0.1064	16.315	16.28	16.386	0	360	25	1.08395544855938	0.0160427097946323	1.08395544855938	655.03921504869	0	9.69468260443364						171	13	4	NaN	NaN	NaN	0.03195	1	36101	38.839	36.598	1	31290			15688	197	13195	13579	15688	15688		
PGLNVVLEGPK	11	Unmodified	_PGLNVVLEGPK_			0	0	0	Q99848	Q99848	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.829506	1121.64446	1.2442	0.00069902	0.32458	0.00018236	1.5688	0.00088138	561.829900179495	10.631	0.23052	10.631	10.551	10.782	0	606	46	0.918606045818476	0.0304124071077684	0.918606045818476	372.457637294869	0	12.3310023348654						661	27	4	NaN	NaN	NaN	3.9625E-05	1	7326	111.61	73.884	1	376870			15689	2680	13196	13580	15689	15689		
PGLTIQAPQLEVSVPSANIEGLEGK	25	Unmodified	_PGLTIQAPQLEVSVPSANIEGLEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	849.793671	2546.35918	0.89671	0.00076202	1.5561	0.0013224	2.4528	0.0020844	850.129392419702	17.309	0.079791	17.309	17.282	17.362	0	345	31	1.09397730668811	0.0200395758714129	1.09397730668811	660.804528515804	0	12.1046774959665						136	10	2	NaN	NaN	NaN	0.00062358	1	37013	78.673	78.073	1	49865			15690	1584	13197	13581	15690	15690		
PGLVDSNPAPPESQEK	16	Unmodified	_PGLVDSNPAPPESQEK_			0	0	0	Q14061	Q14061	Q14061	COX17	Cytochrome c oxidase copper chaperone	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.909941	1663.80533	3.3877	0.0028217	-3.0594	-0.0025482	0.32833	0.00027347	832.907489683951	6.0372	0.15962	6.0372	5.9751	6.1347	0	384	64	1.06790610341098	0.0421731417336262	1.06790610341098	431.275477005913	0	17.0316863626051						691	19	4	NaN	NaN	NaN	1.2766E-08	1	23450	132.93	130.45	1	241720			15691	1716	13198	13582	15691	15691		
PGMVVTFAPVNVTTEVK	17	Unmodified	_PGMVVTFAPVNVTTEVK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.990329	1787.94916	-0.29051	-0.00017343	-0.73701	-0.00043999	-1.0275	-0.00061342	597.323970522473	14.897	0.14188	14.897	14.861	15.003	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	551.236600702985	0	14.7412284374774						440	17	4	NaN	NaN	NaN	2.0317E-05	1	26925	81.48	71.459	1	141070			15692	1446	13199	13583	15692	15692		
PGMVVTFAPVNVTTEVK	17	Unmodified	_PGMVVTFAPVNVTTEVK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.981855	1787.94916	1.8709	0.0016744	-2.5339	-0.0022678	-0.663	-0.00059337	895.481477599655	15.18	0.25713	15.18	15.118	15.375	-1.7764E-15	258	49	1.15196821829984	0.0319443832387405	1.15196821829984	464.957194800625	0	12.8933859323322						421	30	2	NaN	NaN	NaN	0.020495	1	26927	50.314	48.33	1	165030			15693	1446	13199	13583	15693	15693		
PGMVVTFAPVNVTTEVK	17	Unmodified	_PGMVVTFAPVNVTTEVK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.981855	1787.94916	2.3399	0.0020942	2.1799	0.0019509	4.5197	0.0040451	894.984079866883	14.914	0.41676	14.914	14.817	15.234	0	255	178	1.15396378101328	0.117949409149038	1.15396378101328	465.762626531134	0	47.6067165252037						4245	48	6	NaN	NaN	NaN	7.9241E-36	1	26928	236.75	212	1	9910500			15694	1446	13199	13583	15694	15694		
PGMVVTFAPVNVTTEVK	17	Oxidation (M)	_PGM(Oxidation (M))VVTFAPVNVTTEVK_	PGM(1)VVTFAPVNVTTEVK	PGM(140)VVTFAPVNVTTEVK	0	1	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.979312	1803.94407	2.1532	0.0019443	0.935	0.00084428	3.0881	0.0027885	902.980735178882	13.026	0.38129	13.026	12.955	13.336	0	252	88	1.15595906938629	0.0578872928223737	1.15595906938629	466.536130518884	0	23.3628631971389						2319	44	5	NaN	NaN	NaN	3.2521E-10	1	27337	135.13	107.76	1	3189700			15695	1446	13199	13584	15695	15695	516	
PGNQNTQVTEAWNK	14	Unmodified	_PGNQNTQVTEAWNK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.881518	1585.74848	2.9885	0.0023725	-0.7886	-0.00062605	2.1999	0.0017465	793.881021735282	5.6913	0.31926	5.6913	5.5937	5.913	0	432	55	1.035754240522	0.0362158044532401	1.035754240522	418.460903784255	0	14.6317511141822						879	37	5	NaN	NaN	NaN	2.5057E-11	1	21124	166.71	162.19	1	384380			15696	3319	13200	13585	15696	15696		
PGPALWPLPLSVK	13	Unmodified	_PGPALWPLPLSVK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.91083	1373.80711	0.73392	0.00050487	-0.46772	-0.00032175	0.2662	0.00018312	687.910575996286	17.681	0.133	17.681	17.628	17.761	0	498	58	0.991429299781895	0.0383362142097218	0.991429299781895	401.087471746474	0	15.509099072512						577	16	4	NaN	NaN	NaN	0.00041578	1	14639	87.942	80.385	1	280720			15697	562	13201	13586	15697	15697		
PGPGVWDPNWDR	12	Unmodified	_PGPGVWDPNWDR_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.32565	1394.63675	0.85479	0.00059692	2.6915	0.0018795	3.5462	0.0024764	698.329082655675	11.571	0.18629	11.571	11.491	11.678	0	504	55	0.987393073566096	0.0363310729406037	0.987393073566096	399.395139950368	0	14.6957218458634						412	22	3	NaN	NaN	NaN	0.0013708	1	15277	64.906	62.028	1	181090			15698	2551	13202	13587	15698	15698		
PGPIVIELYK	10	Unmodified	_PGPIVIELYK_			0	0	0	Q96BJ3	Q96BJ3	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.8368	1127.65905	0.032496	1.8355E-05	-2.8377	-0.0016028	-2.8052	-0.0015845	564.835623083941	13.141	0.088683	13.141	13.096	13.185	0	639	34	0.896281965493857	0.0223457630982734	0.896281965493857	363.382606200186	0	9.05971775043844						192	11	3	NaN	NaN	NaN	0.0011115	1	7470	65.404	57.757	1	48037			15699	2482	13203	13588	15699	15699		
PGPTAESASGPSEDPSVNFLK	21	Unmodified	_PGPTAESASGPSEDPSVNFLK_			0	0	0	Q13501	Q13501	Q13501	SQSTM1	Sequestosome-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.00002	2085.98548	2.6465	0.002763	-3.1394	-0.0032776	-0.49289	-0.00051458	1044.49861314628	10.977	0.22167	10.977	10.924	11.146	0	192	85	1.1958073123591	0.0557339550731912	1.1958073123591	482.120443689633	0	22.4705760457801						1194	26	5	NaN	NaN	NaN	0.022481	1	33118	48.363	45.075	1	353080			15700	1673	13204	13589	15700	15700		
PGPVGPELPPGHIPIQVIR	19	Unmodified	_PGPVGPELPPGHIPIQVIR_			0	0	0	O95817	O95817	O95817	BAG3	BAG family molecular chaperone regulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.382549	1972.12582	0.19026	0.00012527	-0.46552	-0.00030649	-0.27526	-0.00018122	658.716490301121	13.274	0.337	13.274	13.194	13.531	0	618	46	0.910492137470517	0.0304419315193813	0.910492137470517	550.840653397864	0	18.4171315256109						722	39	3	NaN	NaN	NaN	3.481E-05	1	31156	96.313	92.006	1	181590			15701	456	13205	13590	15701	15701		
PGPVQVVLVQK	11	Unmodified	_PGPVQVVLVQK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.360973	1162.70739	0.51137	0.0002978	0.77057	0.00044875	1.2819	0.00074655	582.361443301227	9.4164	0.16848	9.4164	9.3544	9.5228	0	594	43	0.926715457081489	0.0283790126462771	0.926715457081489	375.584527191016	0	11.5016081424469						485	20	4	NaN	NaN	NaN	1.2306E-07	1	8423	146.03	132.04	1	304720			15702	2029	13206	13591	15702	15702		
PGPYSSVPPPSAPPPK	16	Unmodified	_PGPYSSVPPPSAPPPK_			0	0	0	Q14978	Q14978	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.914298	1573.81404	2.4622	0.00194	-2.9109	-0.0022935	-0.44874	-0.00035357	788.414034926609	6.5161	0.54978	6.5161	6.2855	6.8353	0	429	70	1.03776581230406	0.0462406443446659	1.03776581230406	419.301143246809	0	18.6831699486615						1114	63	3	NaN	NaN	NaN	0.000927	1	20790	74.524	66.967	1	320960			15703	1781	13207	13592	15703	15703		
PGQFIHTNWTGHGGTVSSSSYNA	23	Unmodified	_PGQFIHTNWTGHGGTVSSSSYNA_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	802.368355	2404.08324	1.5761	0.0012646	0.56333	0.000452	2.1395	0.0017166	802.70314934004	8.8487	0.19528	8.8487	8.7955	8.9908	0	549	70	0.957085760909907	0.0465549205796969	0.957085760909907	578.302420959619	0	28.1300008613919						847	23	6	NaN	NaN	NaN	3.4215E-24	1	36365	134.49	131.05	1	410040			15704	1205	13208	13593	15704	15704		
PGSDTIKPDVQK	12	Unmodified	_PGSDTIKPDVQK_			0	0	1	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.843342	1283.67213	2.8042	0.0018026	-2.7088	-0.0017413	0.095359	6.1301E-05	642.841872488074	3.1286	0.39013	3.1286	3.0488	3.439	0	576	79	0.938871150116794	0.0526820081631472	0.938871150116794	380.090418403333	0	21.3276619721114						1005	45	5	NaN	NaN	NaN	0.00042957	1	11873	96.946	61.993	1	642720			15705	1564	13209	13594	15705	15705		
PGSDTIKPDVQK	12	Unmodified	_PGSDTIKPDVQK_			0	0	1	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	428.897987	1283.67213	1.1645	0.00049944	1.6103	0.00069063	2.7747	0.0011901	428.898798863899	3.1286	0.70946	3.1286	3.0488	3.7583	0	720	214	0.841341816837976	0.144874991198964	0.841341816837976	510.906016117646	0	87.9755446683043						2176	81	5	NaN	NaN	NaN	0.00070347	1	11876	101.82	80.729	1	2590600			15706	1564	13209	13594	15706	15706		
PGSDTIKPNVDDSK	14	Unmodified	_PGSDTIKPNVDDSK_			0	0	1	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.865002	1471.71545	2.1205	0.0015625	-0.19177	-0.00014131	1.9287	0.0014212	736.864782032098	3.3326	0.088674	3.3326	3.306	3.3947	-4.4409E-16	537	46	0.965173861991602	0.0303115059679868	0.965173861991602	390.206797747988	0	12.2545337627367						176	11	2	NaN	NaN	NaN	0.056564	1	17640	74.524	66.05	1	44383			15707	936	13210	13595	15707	15707		
PGSDTIKPNVDDSK	14	Unmodified	_PGSDTIKPNVDDSK_			0	0	1	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.579094	1471.71545	1.2954	0.00063677	1.5819	0.00077763	2.8772	0.0014144	491.579769509582	3.3326	0.20402	3.3326	3.2971	3.5012	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	520.096262503291	0	13.5849500017224						353	24	4	NaN	NaN	NaN	0.0016247	1	17641	62.454	57.303	1	150930			15708	936	13210	13595	15708	15708		
PGSETIIPDPAGK	13	Unmodified	_PGSETIIPDPAGK_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.337892	1280.66123	1.7751	0.0011384	-1.636	-0.0010493	0.13901	8.9153E-05	641.336917488708	8.3342	0.37255	8.3342	8.139	8.5116	0	564	46	0.946969335010767	0.0303660983099298	0.946969335010767	383.37845909561	0	12.2936483246041						992	43	4	NaN	NaN	NaN	1.5351E-05	1	11779	101.48	94.342	1	459910			15709	1637	13211	13596	15709	15709		
PGSEVLTLLLK	11	Unmodified	_PGSEVLTLLLK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.360639	1168.70673	-0.15043	-8.8054E-05	-2.6908	-0.0015751	-2.8412	-0.0016631	585.358996549887	16.519	0.097516	16.519	16.475	16.573	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.631610074582	0	8.22063407157538						203	12	3	NaN	NaN	NaN	3.8592E-05	1	8589	87.895	36.031	1	57449			15710	2005	13212	13597	15710	15710		
PGSVPLVSEK	10	Unmodified	_PGSVPLVSEK_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.787307	1011.56006	0.3788	0.00019197	-0.88179	-0.00044688	-0.50299	-0.00025491	506.786813374175	6.0372	0.19503	6.0372	5.9663	6.1614	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	343.235551059551	0	8.27446482327093						218	23	2	NaN	NaN	NaN	0.0004633	1	4552	95.311	57.588	1	58768			15711	3059	13213	13598	15711	15711		
PGTPSLLR	8	Unmodified	_PGTPSLLR_			0	0	0	Q86XI8	Q86XI8	Q86XI8	C19orf68	Uncharacterized protein C19orf68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.750527	839.486502	-0.92208	-0.00038797	-0.96288	-0.00040513	-1.885	-0.0007931	420.750123101279	7.7221	0.15086	7.7221	7.6777	7.8285	0	795	22	0.790287188799094	0.0143191751131978	0.790287188799094	321.733581355914	0	5.8294751028829						178	18	3	NaN	NaN	NaN	0.013198	1	1429	70.67	21.611	1	51458			15712	2188	13214	13599	15712	15712		
PGTTGSGAGSGGPGGLTSAAPAGGDK	26	Unmodified	_PGTTGSGAGSGGPGGLTSAAPAGGDK_			0	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.9958	2083.97704	2.3669	0.0024687	-0.50252	-0.00052412	1.8644	0.0019445	1043.49684297789	5.4342	0.19507	5.4342	5.3632	5.5583	0	180	76	1.203763835057	0.0497590341763592	1.203763835057	485.331404912212	0	20.0617606714723						933	23	5	NaN	NaN	NaN	3.2684E-10	1	33077	127.38	125.91	1	301200			15713	1440	13215	13600	15713	15713		
PGVFDLINK	9	Unmodified	_PGVFDLINK_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.784567	1001.55458	-0.23862	-0.00011974	-1.0859	-0.0005449	-1.3245	-0.00066463	501.784013111383	13.806	0.27486	13.806	13.735	14.01	0	723	61	0.839303037468863	0.0407727738696773	0.839303037468863	340.798376951508	0	16.5557546419727						827	32	4	NaN	NaN	NaN	0.00012917	1	4337	102.46	64.742	1	685610			15714	341	13216	13601	15714	15714		
PGVGLDAINDANLLEACIYR	20	Unmodified	_PGVGLDAINDANLLEACIYR_			0	0	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.368527	2173.08375	-0.046439	-3.3686E-05	0.79416	0.00057606	0.74772	0.00054237	725.703238294304	18.178	0.070953	18.178	18.142	18.213	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	600.639469094231	0	9.75853450086208						205	9	5	NaN	NaN	NaN	3.1273E-08	1	34358	130.65	116.88	1	54276			15715	695	13217	13602	15715	15715		
PGVGLDAINDANLLEACIYR	20	Unmodified	_PGVGLDAINDANLLEACIYR_			0	0	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1087.54915	2173.08375	0.20189	0.00021957	0.85322	0.00092792	1.0551	0.0011475	1088.05165491164	18.178	0.12412	18.178	18.133	18.257	0	111	55	1.24942920585258	0.0356915922281777	1.24942920585258	503.605934563784	0	14.3861673602191						570	15	5	NaN	NaN	NaN	0.030868	1	34359	32.61	30.639	1	137550			15716	695	13217	13602	15716	15716		
PGVLLCDR	8	Unmodified	_PGVLLCDR_			0	0	0	Q9BUP3	Q9BUP3	Q9BUP3	HTATIP2	Oxidoreductase HTATIP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.247295	928.480036	-1.1592	-0.00053933	1.8602	0.00086546	0.70099	0.00032613	465.248098297839	6.3033	0.11532	6.3033	6.2589	6.3742	0	756	28	0.816857749704129	0.0183770979161022	0.816857749704129	332.037961184165	0	7.46995927596259						142	14	3	NaN	NaN	NaN	0.068587	1	2846	27.736	14.089	1	26688			15717	2748	13218	13603	15717	15717		
PGVTTEEIDHAVHLACIAR	19	Unmodified	_PGVTTEEIDHAVHLACIAR_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	523.017832	2088.04222	-0.074196	-3.8806E-05	1.024	0.00053555	0.94977	0.00049674	523.269212895957	12.369	0.13303	12.369	12.325	12.458	0	669	28	0.875957769340875	0.0183032026669903	0.875957769340875	706.320645820006	0	14.7586223683487						283	16	5	NaN	NaN	NaN	0.00042064	1	33155	76.563	75.384	1	91454			15718	1236	13219	13604	15718	15718		
PGVWWPDMHR	10	Unmodified	_PGVWWPDMHR_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	427.537959	1279.59205	-0.95745	-0.00040935	-2.0756	-0.00088738	-3.033	-0.0012967	427.537138025842	11.332	0.1508	11.332	11.261	11.412	0	888	22	0.726732155490709	0.0143811668140997	0.726732155490709	441.324109452138	0	8.7332803277842						239	18	3	NaN	NaN	NaN	0.0054923	1	11736	44.767	36.584	1	65890			15719	672	13220	13605	15719	15719		
PGWYSQGNAVHLYELLK	17	Unmodified	_PGWYSQGNAVHLYELLK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.007259	1973.99995	0.55386	0.000365	1.4685	0.00096775	2.0224	0.0013327	659.342129102893	15.171	0.10641	15.171	15.109	15.216	1.7764E-15	504	28	0.987393073566096	0.0181667871674303	0.987393073566096	597.361153269764	0	10.9906917762231						230	13	5	NaN	NaN	NaN	0.00051284	1	31183	52.201	40.031	1	70202			15720	2001	13221	13606	15720	15720		
PGYLEATVDWFR	12	Unmodified	_PGYLEATVDWFR_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.359159	1452.70376	0.57045	0.00041492	1.3501	0.00098204	1.9206	0.001397	727.361188611265	17.22	0.24831	17.22	17.158	17.406	0	465	76	1.01360860968299	0.0503449134258804	1.01360860968299	409.838255812829	0	20.3562512299139						951	29	5	NaN	NaN	NaN	2.8488E-11	1	17049	178.95	173.08	1	480200			15721	1822	13222	13607	15721	15721		
PHASIMFCTVGVLLR	15	Unmodified	_PHASIMFCTVGVLLR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.637344	1699.8902	-1.3035	-0.00073992	-1.0889	-0.0006181	-2.3924	-0.001358	567.63720731766	15.712	0.079799	15.712	15.677	15.757	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	512.043042941305	0	12.3439490278305						152	10	3	NaN	NaN	NaN	0.00014276	1	24497	90.142	82.141	1	26806			15722	1575	13223	13608	15722	15722		
PHIDSVWPFEK	11	Unmodified	_PHIDSVWPFEK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.231189	1353.67174	-1.8511	-0.00083711	0.96475	0.00043629	-0.88633	-0.00040083	452.231663394351	12.219	0.070937	12.219	12.183	12.254	0	849	25	0.753417699604308	0.0164092837353766	0.753417699604308	457.262412535997	0	9.95908202417695						100	9	2	NaN	NaN	NaN	0.055737	1	14006	13.274	10.171	1	22977			15723	2647	13224	13609	15723	15723		
PHIIPFILDEIGADVQAR	18	Unmodified	_PHIIPFILDEIGADVQAR_			0	0	0	Q96C36	Q96C36	Q96C36	PYCR2	Pyrroline-5-carboxylate reductase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.701947	2003.08401	-1.1894	-0.00079536	1.824	0.0012197	0.63455	0.00042433	669.037217001744	19.312	0.062036	19.312	19.277	19.339	0	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	544.641972006361	0	9.82617603743381						103	8	3	NaN	NaN	NaN	5.4823E-05	1	31694	65.408	62.692	1	17068			15724	2490	13225	13610	15724	15724		
PHLMSQELPEDWDK	14	Unmodified	_PHLMSQELPEDWDK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.603133	1723.78757	-1.2288	-0.00070728	0.32943	0.00018962	-0.89933	-0.00051766	575.603480910983	10.232	0.18621	10.232	10.179	10.365	0	771	124	0.806643990516186	0.0836366092539718	0.806643990516186	488.503823077572	0	50.6503536258482						1134	22	6	NaN	NaN	NaN	4.6507E-06	1	25147	108.4	79.754	1	624000			15725	554	13226	13611	15725	15725		
PHLMSQELPEDWDK	14	Unmodified	_PHLMSQELPEDWDK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.901062	1723.78757	2.6682	0.0023024	-0.27573	-0.00023793	2.3925	0.0020645	862.901112341122	10.232	0.14186	10.232	10.17	10.312	0	333	52	1.10198982404297	0.034050864491993	1.10198982404297	444.912302359244	0	13.7475393945784						585	17	5	NaN	NaN	NaN	0.0038993	1	25148	43.613	37.236	1	181690			15726	554	13226	13611	15726	15726		
PHLMSQELPEDWDK	14	Oxidation (M)	_PHLM(Oxidation (M))SQELPEDWDK_	PHLM(1)SQELPEDWDK	PHLM(80)SQELPEDWDK	0	1	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.934772	1739.78249	-1.2284	-0.00071361	0.53702	0.00031197	-0.69137	-0.00040164	580.935097746341	8.2987	0.10653	8.2987	8.2454	8.352	0	774	34	0.804600385996946	0.0224765256052036	0.804600385996946	487.230518950946	0	13.610792917118						341	13	4	NaN	NaN	NaN	0.0017096	1	25582	79.889	62.158	1	93176			15727	554	13226	13612	15727	15727	133	
PHLMSQELPEDWDK	14	Oxidation (M)	_PHLM(Oxidation (M))SQELPEDWDK_	PHLM(1)SQELPEDWDK	PHLM(76)SQELPEDWDK	0	1	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.898519	1739.78249	2.9267	0.0025489	0.07463	6.4995E-05	3.0014	0.0026139	870.898997530363	8.281	0.15083	8.281	8.2277	8.3785	0	333	34	1.10198982404297	0.0220298733175506	1.10198982404297	444.879670398325	0	8.89358736950254						464	18	5	NaN	NaN	NaN	0.00031317	1	25583	75.5	71.764	1	105500			15728	554	13226	13612	15728	15728	133	
PHMQTYEVDLNK	12	Unmodified	_PHMQTYEVDLNK_			0	0	0	P21912	P21912	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.238014	1473.69221	-1.0786	-0.00053091	0.59929	0.00029499	-0.47927	-0.00023591	492.23822747943	6.454	0.062065	6.454	6.4274	6.4895	0	810	25	0.78005493425781	0.0163773081327158	0.78005493425781	473.039642195271	0	9.931500512323						115	8	3	NaN	NaN	NaN	0.0014049	1	17694	68.49	51.021	1	25802			15729	795	13227	13613	15729	15729		
PHMQTYEVDLNK	12	Unmodified	_PHMQTYEVDLNK_			0	0	0	P21912	P21912	P21912	SDHB	Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.853383	1473.69221	2.0182	0.0014891	-1.1667	-0.00086089	0.85143	0.00062823	737.853152889887	6.454	0.16848	6.454	6.4096	6.5781	0	444	49	1.02770517576159	0.0322051603576423	1.02770517576159	415.48217873757	0	13.0199501837385						612	20	5	NaN	NaN	NaN	4.7347E-11	1	17695	131.54	111.21	1	255490			15730	795	13227	13613	15730	15730		
PHPQEEYLDCLWAQIQK	17	Unmodified	_PHPQEEYLDCLWAQIQK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.014085	2154.02042	0.0011305	8.1282E-07	-0.95728	-0.0006883	-0.95615	-0.00068749	719.347566007613	15.837	0.088664	15.837	15.792	15.881	0	630	55	0.902373728295776	0.0365632670229064	0.902373728295776	545.607088358082	0	22.1074451035969						509	11	5	NaN	NaN	NaN	0.0010749	1	34091	65.408	63.56	1	125140			15731	1583	13228	13614	15731	15731		
PHSEAGTAFIQTQQLHAAMADTFLEHMCR	29	Unmodified	_PHSEAGTAFIQTQQLHAAMADTFLEHMCR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	825.385219	3297.51177	1.8688	0.0015424	1.1506	0.00094969	3.0194	0.0024921	825.888081461226	14.914	0.42564	14.914	14.817	15.242	0	381	61	1.06991323971056	0.0401399775748084	1.06991323971056	860.624369799594	0	32.2880787169572						1664	49	8	NaN	NaN	NaN	9.084E-82	1	38544	326	319.5	1	1303900			15732	699	13229	13615	15732	15732		
PHSEAGTAFIQTQQLHAAMADTFLEHMCR	29	Oxidation (M)	_PHSEAGTAFIQTQQLHAAM(Oxidation (M))ADTFLEHMCR_	PHSEAGTAFIQTQQLHAAM(1)ADTFLEHMCR	PHSEAGTAFIQTQQLHAAM(37)ADTFLEHM(-37)CR	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	829.383948	3313.50669	1.9784	0.0016409	-0.58999	-0.00048933	1.3884	0.0011515	829.885069800154	13.061	0.1596	13.061	13.034	13.194	0	390	46	1.06389100039157	0.0301278201847186	1.06389100039157	855.7628073307	0	24.2339374715457						630	19	6	NaN	NaN	NaN	4.9807E-10	1	38556	80.677	80.605	2	193390			15733	699	13229	13616	15733	15733	225;226	
PHSEAGTAFIQTQQLHAAMADTFLEHMCR	29	Oxidation (M)	_PHSEAGTAFIQTQQLHAAMADTFLEHM(Oxidation (M))CR_	PHSEAGTAFIQTQQLHAAMADTFLEHM(1)CR	PHSEAGTAFIQTQQLHAAM(-51)ADTFLEHM(51)CR	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	829.383948	3313.50669	2.1472	0.0017809	-0.45202	-0.0003749	1.6952	0.001406	829.885233400476	13.265	0.17737	13.265	13.194	13.371	0	384	40	1.06790610341098	0.0260963753447068	1.06790610341098	858.99243828203	0	20.9911611293091						723	21	7	NaN	NaN	NaN	6.0349E-28	1	38557	194.94	193.48	2	271760			15734	699	13229	13616	15734	15734	225;226	
PHVNVGTIGHVDHGK	15	Unmodified	_PHVNVGTIGHVDHGK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	392.458845	1565.80627	-0.54222	-0.0002128	0.56376	0.00022125	0.021538	8.4527E-06	392.459362586933	3.51	0.133	3.51	3.4834	3.6164	0	891	25	0.724677416575734	0.0164390592913533	0.724677416575734	585.619967868966	0	13.2845886373668						198	16	3	NaN	NaN	NaN	0.064561	1	20532	27.378	26.975	1	60429			15735	1131	13230	13617	15735	15735		
PHVNVGTIGHVDHGK	15	Unmodified	_PHVNVGTIGHVDHGK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.910413	1565.80627	2.5653	0.0020109	-0.65464	-0.00051318	1.9106	0.0014977	783.91032437018	3.5012	0.053196	3.5012	3.4923	3.5455	0	393	28	1.0618830335572	0.0180741958638628	1.0618830335572	429.064646448233	0	7.30306277913297						73	7	2	NaN	NaN	NaN	0.0159	1	20534	50.116	48.406	1	13673			15736	1131	13230	13617	15736	15736		
PHVNVGTIGHVDHGK	15	Unmodified	_PHVNVGTIGHVDHGK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.942701	1565.80627	1.0904	0.00057021	2.1104	0.0011036	3.2008	0.0016738	522.944015725013	3.51	0.2926	3.51	3.4657	3.7583	0	717	43	0.84338031290707	0.0285449012969368	0.84338031290707	511.161704712619	0	17.3006888879127						697	34	5	NaN	NaN	NaN	6.5981E-12	1	20535	175.68	163.09	1	295940			15737	1131	13230	13617	15737	15737		
PHYGSVLDNER	11	Unmodified	_PHYGSVLDNER_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	429.542314	1285.60511	-0.30333	-0.00013029	-1.1824	-0.00050789	-1.4857	-0.00063819	429.541861655327	4.4056	0.07094	4.4056	4.379	4.4499	0	870	25	0.739054571787983	0.0164230162386997	0.739054571787983	448.784782014743	0	9.97274090988753						120	9	3	NaN	NaN	NaN	0.0054948	1	11920	49.96	40.446	1	31698			15738	1095	13231	13618	15738	15738		
PHYGSVLDNER	11	Unmodified	_PHYGSVLDNER_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.809833	1285.60511	2.3128	0.001489	0.18651	0.00012008	2.4993	0.0016091	643.809240666697	4.3968	0.1064	4.3968	4.3701	4.4765	0	543	31	0.961130371139249	0.0202230534711471	0.961130371139249	389.095549821008	0	8.18692275855221						202	13	3	NaN	NaN	NaN	0.0060449	1	11921	39.039	32.775	1	49280			15739	1095	13231	13618	15739	15739		
PIAAVMNTWTK	11	Unmodified	_PIAAVMNTWTK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.328816	1230.64308	1.4862	0.000916	-0.68894	-0.00042461	0.79728	0.00049139	616.329123950966	11.004	0.20395	11.004	10.915	11.119	0	576	46	0.938871150116794	0.0303703038284173	0.938871150116794	380.264710715662	0	12.3006813003288						441	24	3	NaN	NaN	NaN	0.00077909	1	10329	65.933	55.231	1	162640			15740	1277	13232	13619	15740	15740		
PIAEAPSAFTLGSEMK	16	Unmodified	_PIAEAPSAFTLGSEMK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.916181	1647.81781	3.3305	0.0027474	-2.2614	-0.0018654	1.0691	0.00088194	824.915928110076	12.91	0.1685	12.91	12.848	13.017	0	354	46	1.08796502040166	0.0300655815217838	1.08796502040166	439.411504542224	0	12.1430029124894						454	20	4	NaN	NaN	NaN	0.00011346	1	22971	100.07	95.544	1	120800			15741	1151	13233	13620	15741	15741		
PIDVQVITHHMQR	13	Unmodified	_PIDVQVITHHMQR_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	394.212147	1572.81948	-1.3373	-0.00052718	-0.69215	-0.00027286	-2.0294	-0.00080003	394.211978396828	8.0858	0.15972	8.0858	8.0414	8.2011	0	867	28	0.741107305531458	0.0184746054874579	0.741107305531458	598.873802397093	0	14.9289544894259						360	19	5	NaN	NaN	NaN	0.023705	1	20758	28.647	26.167	1	167490			15742	1330	13234	13621	15742	15742		
PIDVQVITHHMQR	13	Unmodified	_PIDVQVITHHMQR_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.280437	1572.81948	-0.52635	-0.00027648	-0.32076	-0.00016849	-0.84711	-0.00044497	525.279891951449	8.0858	0.15087	8.0858	8.0414	8.1922	0	759	31	0.814815566123307	0.0204232585244036	0.814815566123307	493.82971942333	0	12.3777851652998						320	18	4	NaN	NaN	NaN	5.6649E-05	1	20760	106	92.829	1	100230			15743	1330	13234	13621	15743	15743		
PIEEIIVQNGK	11	Unmodified	_PIEEIIVQNGK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.350803	1238.68705	1.1915	0.00073917	-0.72322	-0.00044865	0.46831	0.00029052	620.350523403157	8.5559	0.11524	8.5559	8.5205	8.6357	0	552	31	0.955063035883597	0.0202258527858471	0.955063035883597	386.79493679679	0	8.19135193806869						183	14	3	NaN	NaN	NaN	1.8263E-07	1	10590	111.39	83.296	1	53007			15744	1161	13235	13622	15744	15744		
PIEIQWVKPEPK	12	Unmodified	_PIEIQWVKPEPK_			0	0	1	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.61341	1462.8184	0.59116	0.00028885	0.7525	0.00036768	1.3437	0.00065653	488.613711570816	10.028	0.1862	10.028	9.975	10.161	0	684	46	0.86578508874114	0.0305350029488345	0.86578508874114	525.064234737472	0	18.5182652883849						671	22	5	NaN	NaN	NaN	4.1394E-05	1	17365	108.2	93.74	1	397880			15745	2348	13236	13623	15745	15745		
PIEVQVGGR	9	Unmodified	_PIEVQVGGR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.771991	953.529429	-0.077535	-3.7044E-05	3.4288	0.0016382	3.3513	0.0016012	477.773280986221	5.6381	0.23058	5.6381	5.5937	5.8243	0	786	94	0.796423123669906	0.0633077644866417	0.796423123669906	323.607608718874	0	25.7236055433153						815	27	3	NaN	NaN	NaN	4.8516E-05	1	3318	94.806	62.678	1	260330			15746	2110	13237	13624	15746	15746		
PIFLNTIDPSHPMAK	15	Unmodified	_PIFLNTIDPSHPMAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.964114	1679.87051	0.082968	4.6542E-05	-0.32772	-0.00018384	-0.24475	-0.0001373	560.963765325931	12.139	0.27491	12.139	11.97	12.245	0	672	67	0.873923798053065	0.0447318703478083	0.873923798053065	529.358724379068	0	27.0952752163957						1629	32	6	NaN	NaN	NaN	0.022466	1	23915	58.476	53.325	1	606060			15747	1136	13238	13625	15747	15747		
PIFLNTIDPSHPMAK	15	Unmodified	_PIFLNTIDPSHPMAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.942533	1679.87051	2.1114	0.0017755	1.3689	0.0011512	3.4803	0.0029267	840.942424186771	12.263	0.37245	12.263	12.059	12.431	0	285	40	1.13399579921816	0.0259780251845936	1.13399579921816	457.929708089385	0	10.4904352359342						686	43	5	NaN	NaN	NaN	1.7419E-06	1	23916	114.93	105.19	1	216400			15748	1136	13238	13625	15748	15748		
PIGLCCIAPVLAAK	14	Unmodified	_PIGLCCIAPVLAAK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.91219	1481.80983	0.974	0.00072262	0.079646	5.909E-05	1.0536	0.00078171	741.912632779447	15.331	0.10639	15.331	15.287	15.393	0	426	64	1.03977710643793	0.0422138885352086	1.03977710643793	420.341210472228	0	17.0654238257058						429	13	3	NaN	NaN	NaN	1.1443E-05	1	17974	90.761	84.734	1	104830			15749	0	13239	13626	15749	15749		
PIGPDDAIDALSSDFTCGSPTAAGK	25	Unmodified	_PIGPDDAIDALSSDFTCGSPTAAGK_			0	0	0	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1232.07084	2462.12713	-0.32165	-0.0003963	-0.13504	-0.00016638	-0.4567	-0.00056268	1232.57200283061	17.025	0.14185	17.025	16.936	17.078	0	60	34	1.28308947459206	0.0217622834966473	1.28308947459206	516.787513035108	0	8.7651536302821						245	17	3	NaN	NaN	NaN	0.053525	1	36632	10.233	9.586	1	42536			15750	785	13240	13627	15750	15750		
PIIDLYEEMGK	11	Unmodified	_PIIDLYEEMGK_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.331221	1306.64789	1.2765	0.00083527	-0.073541	-4.812E-05	1.203	0.00078715	654.331009032249	14.249	0.15958	14.249	14.205	14.365	0	519	64	0.97729762293174	0.0424009137494717	0.97729762293174	395.572823457676	0	17.1622735751148						751	19	4	NaN	NaN	NaN	0.00081968	1	12556	64.064	60.457	1	272270			15751	902	13241	13628	15751	15751		
PILLQGHER	9	Unmodified	_PILLQGHER_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	354.873336	1061.59818	-0.27856	-9.8853E-05	-0.18501	-6.5655E-05	-0.46357	-0.00016451	354.873260195163	4.1751	0.27488	4.1751	4.1307	4.4056	0	888	31	0.726732155490709	0.0205459583844748	0.726732155490709	442.288794583402	0	12.5042590984489						489	32	4	NaN	NaN	NaN	0.0033637	1	5776	69.905	43.681	1	187010			15752	1655	13242	13629	15752	15752		
PILLQGHER	9	Unmodified	_PILLQGHER_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.806365	1061.59818	1.8001	0.00095728	0.32122	0.00017083	2.1213	0.0011281	531.806608075974	4.1751	0.13302	4.1751	4.1396	4.2726	0	606	28	0.918606045818476	0.0182499701953044	0.918606045818476	372.713282239836	0	7.40470446850861						185	16	3	NaN	NaN	NaN	0.00014931	1	5777	88.921	61.216	1	45068			15753	1655	13242	13629	15753	15753		
PILNLALK	8	Unmodified	_PILNLALK_			0	0	0	Q5VW36	Q5VW36	Q5VW36	FOCAD	Focadhesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.294571	880.574589	-2.2682	-0.0010009	1.9196	0.00084712	-0.34857	-0.00015382	441.295345821838	12.298	0.10642	12.298	12.263	12.369	0	750	28	0.820941264895493	0.0183719873373771	0.820941264895493	333.962410079829	0	7.47380285473605						130	13	2	NaN	NaN	NaN	0.0072608	1	2021	73.637	36.029	1	34487			15754	2012	13243	13630	15754	15754		
PILYSNWLSK	10	Unmodified	_PILYSNWLSK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.837331	1219.66011	0.36409	0.0002224	-1.3256	-0.00080972	-0.9615	-0.00058732	610.836833334657	13.708	0.1862	13.708	13.611	13.797	0	552	28	0.955063035883597	0.0181969696158962	0.955063035883597	386.861440528329	0	7.37093324143046						212	22	3	NaN	NaN	NaN	0.050049	1	10014	48.157	24.036	1	45541			15755	1737	13244	13631	15755	15755		
PIMFSGGIGSMEADHISK	18	Unmodified	_PIMFSGGIGSMEADHISK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.950229	1875.8859	0.47012	0.00044141	1.3253	0.0012444	1.7955	0.0016858	939.452919225821	11.953	0.079804	11.953	11.926	12.006	0	168	28	1.21171599086077	0.0178862150886792	1.21171599086077	488.896084594459	0	7.21662550550127						175	10	4	NaN	NaN	NaN	4.794E-05	1	29052	59.67	54.589	1	34551			15756	141	13245	13632	15756	15756		
PIMFSGGIGSMEADHISK	18	Unmodified	_PIMFSGGIGSMEADHISK_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.302578	1875.8859	0.30715	0.00019237	1.6793	0.0010518	1.9865	0.0012441	626.303755901926	11.953	0.13302	11.953	11.917	12.05	0	528	55	0.971237000454584	0.0363813613911358	0.971237000454584	587.801223624154	0	22.0183217204585						676	16	5	NaN	NaN	NaN	3.5786E-05	1	29055	88.42	85.941	1	212420			15757	141	13245	13632	15757	15757		
PIPNLIFAIEQYEK	14	Unmodified	_PIPNLIFAIEQYEK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.958706	1673.90286	1.773	0.0014857	-1.0779	-0.00090322	0.69508	0.00058245	837.957965315085	19.437	0.10644	19.437	19.383	19.49	0	351	58	1.08996939197032	0.0380988236514024	1.08996939197032	440.163830041941	0	15.3855000535194						260	13	4	NaN	NaN	NaN	0.00039824	1	23743	63.908	55.944	1	43413			15758	3067	13246	13633	15758	15758		
PIPYIYGSR	9	Unmodified	_PIPYIYGSR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.290017	1064.56548	0.9912	0.0005286	-2.4846	-0.001325	-1.4934	-0.00079639	533.289381328208	9.7268	0.22169	9.7268	9.6647	9.8864	0	672	82	0.873923798053065	0.0548791784158134	0.873923798053065	354.571356106012	0	22.2657682011048						975	26	3	NaN	NaN	NaN	0.0016636	1	5832	74.486	53.211	1	322790			15759	653	13247	13634	15759	15759		
PISDSVGVFLR	11	Unmodified	_PISDSVGVFLR_			0	0	0	Q8NE86	Q8NE86	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.332413	1188.65027	0.4677	0.00027843	-1.8395	-0.0010951	-1.3718	-0.00081669	595.331276612019	13.363	0.26606	13.363	13.265	13.531	0	597	34	0.924688525662974	0.0222993386334626	0.924688525662974	374.667149059835	0	9.0352906950252						445	31	4	NaN	NaN	NaN	7.9457E-08	1	9124	123.5	103.27	1	139700			15760	2309	13248	13635	15760	15760		
PISIPTNLVSLFSR	14	Unmodified	_PISIPTNLVSLFSR_			0	0	0	Q86TB9	Q86TB9	Q86TB9	PATL1	Protein PAT1 homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.445766	1542.87698	0.79805	0.00061645	-2.4834	-0.0019183	-1.6853	-0.0013018	772.441521593711	19.614	0.062067	19.614	19.579	19.641	0	387	61	1.06589869032374	0.0401842911414492	1.06589869032374	430.743321979442	0	16.2389870770924						171	8	3	NaN	NaN	NaN	0.0064373	1	19836	42.446	39.967	1	31660			15761	2157	13249	13636	15761	15761		
PITQYPHAVGK	11	Unmodified	_PITQYPHAVGK_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.83258	1209.65061	1.9254	0.0011665	-3.0004	-0.0018177	-1.075	-0.00065126	605.831254805734	4.1307	0.097467	4.1307	4.0953	4.1928	0	540	40	0.963152256458504	0.0262917911447993	0.963152256458504	390.174219408529	0	10.6508384505001						176	12	3	NaN	NaN	NaN	0.0071088	1	9728	53.517	39.522	1	33447			15762	1011	13250	13637	15762	15762		
PIVFVGTGQTYCDLR	15	Unmodified	_PIVFVGTGQTYCDLR_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.435072	1724.85559	3.6537	0.0031548	-4.6924	-0.0040516	-1.0387	-0.00089683	863.433499168828	12.893	0.23056	12.893	12.786	13.017	0	339	55	1.09798411722691	0.036061308536395	1.09798411722691	443.292882738206	0	14.559155424565						642	27	4	NaN	NaN	NaN	3.9743E-08	1	25190	93.162	78.707	1	162630			15763	580	13251	13638	15763	15763		
PIVQIAVIENSESLDCQLLAVTHAGVR	27	Unmodified	_PIVQIAVIENSESLDCQLLAVTHAGVR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	978.190207	2931.54879	0.84372	0.00082532	-0.064364	-6.2961E-05	0.77936	0.00076236	978.524069052188	19.002	0.044287	19.002	18.984	19.029	0	240	22	1.16393748060522	0.0139574234245761	1.16393748060522	702.561492031259	0	8.42480664939444						74	6	4	NaN	NaN	NaN	0.017217	1	38122	16.417	14.873	1	10461			15764	352	13252	13639	15764	15764		
PKPENQDESELLTVPDGWK	19	Unmodified	_PKPENQDESELLTVPDGWK_			0	0	1	Q13601	Q13601	Q13601	KRR1	KRR1 small subunit processome component homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.026936	2181.05898	0.13428	9.776E-05	0.89592	0.00065226	1.0302	0.00075002	728.362067087767	12.139	0.097559	12.139	12.086	12.183	0	609	46	0.916577990479294	0.0304166222504839	0.916577990479294	554.151500051614	0	18.389506426829						339	12	4	NaN	NaN	NaN	3.9339E-07	1	34464	81.409	62.878	1	69712			15765	1690	13253	13640	15765	15765		
PKPGDGEFVEVISLPK	16	Unmodified	_PKPGDGEFVEVISLPK_			0	0	1	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.313689	1710.91924	1.3197	0.00075395	-1.7235	-0.00098467	-0.40385	-0.00023072	571.312686328436	12.857	0.14186	12.857	12.795	12.937	0	624	46	0.906433495720521	0.0304461528019007	0.906433495720521	548.969279609915	0	18.4393037652111						414	17	4	NaN	NaN	NaN	0.0037657	1	24793	79.795	62.803	1	154020			15766	3264	13254	13641	15766	15766		
PLAAFTMFSR	10	Unmodified	_PLAAFTMFSR_			0	0	0	P10619	P10619	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.797152	1139.57975	-0.51318	-0.00029292	-0.39787	-0.0002271	-0.91105	-0.00052003	570.796594131462	14.861	0.1596	14.861	14.808	14.967	0	621	58	0.908462957275599	0.0385544403778527	0.908462957275599	368.274639716832	0	15.6292807823648						405	19	3	NaN	NaN	NaN	0.0056335	1	7776	79.059	69.666	1	105210			15767	630	13255	13642	15767	15767		
PLAAVTCTAPVNIAVIK	17	Unmodified	_PLAAVTCTAPVNIAVIK_			0	0	0	P53602	P53602	P53602	MVD	Diphosphomevalonate decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.500215	1736.98588	1.7901	0.0015565	-0.36674	-0.00031888	1.4233	0.0012376	869.499224587126	13.921	0.088675	13.921	13.895	13.983	0	225	31	1.17390432875292	0.0199268519086451	1.17390432875292	473.918005504355	0	8.04468786869381						142	11	3	NaN	NaN	NaN	7.406E-07	1	25527	86.838	80.811	1	29110			15768	1238	13256	13643	15768	15768		
PLADTMRPDTLQDYFGQSK	19	Unmodified	_PLADTMRPDTLQDYFGQSK_			0	0	1	Q96S55	Q96S55	Q96S55	WRNIP1	ATPase WRNIP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.352766	2182.03647	0.049175	3.5817E-05	-1.468	-0.0010692	-1.4188	-0.0010334	728.35130133205	13.212	0.15962	13.212	13.141	13.3	0	633	40	0.900343422309015	0.026386663985959	0.900343422309015	544.33475103309	0	15.9529995060719						524	19	5	NaN	NaN	NaN	0.047115	1	34473	25.922	25.823	1	136250			15769	2617	13257	13644	15769	15769		
PLAHHIPVEK	10	Unmodified	_PLAHHIPVEK_			0	0	0	P55145	P55145	P55145	MANF	Mesencephalic astrocyte-derived neurotrophic factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	380.888986	1139.64513	-0.014026	-5.3422E-06	1.2721	0.00048453	1.2581	0.00047918	380.889479667572	3.04	0.24829	3.04	2.9513	3.1996	0	816	28	0.775960037304758	0.0184283211995636	0.775960037304758	471.835173843256	0	11.2056416810295						394	29	3	NaN	NaN	NaN	0.03514	1	7789	40.502	26.508	1	122660			15770	1268	13258	13645	15770	15770		
PLALVEEIR	9	Unmodified	_PLALVEEIR_			0	0	0	Q9BSD7	Q9BSD7	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.310949	1038.60735	0.017511	9.1113E-06	-2.5282	-0.0013154	-2.5107	-0.0013063	520.310282982955	11.855	0.10643	11.855	11.82	11.926	0	645	37	0.892219381832517	0.0243822699655701	0.892219381832517	362.109833811881	0	9.89561525446254						241	13	3	NaN	NaN	NaN	0.045907	1	5204	37.722	25.656	1	80955			15771	2722	13259	13646	15771	15771		
PLALYVFSHNHK	12	Unmodified	_PLALYVFSHNHK_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.9261	1424.75647	-1.7856	-0.00084982	-2.3102	-0.0010995	-4.0958	-0.0019493	475.925923624787	8.769	0.15084	8.769	8.7245	8.8753	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	480.63843880632	0	9.92637326322193						398	18	6	NaN	NaN	NaN	0.0039472	1	16234	43.272	38.744	1	107880			15772	1194	13260	13647	15772	15772		
PLCDLLTVMDSK	12	Unmodified	_PLCDLLTVMDSK_			0	0	0	O60684;O15131;P52294	O60684;P52294	O60684	KPNA6;KPNA5;KPNA1	Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.349088	1390.68362	0.60676	0.00042252	0.27079	0.00018857	0.87755	0.00061108	696.349519187283	16.289	0.20393	16.289	16.236	16.44	0	468	52	1.01159370163332	0.0342534486123975	1.01159370163332	409.195591182024	0	13.8557210590993						697	24	4	NaN	NaN	NaN	1.917E-05	1	15171	106	97.529	1	399340			15773	274;1208	13261	13648	15773	15773		
PLCDLLTVMDSK	12	Oxidation (M)	_PLCDLLTVM(Oxidation (M))DSK_	PLCDLLTVM(1)DSK	PLCDLLTVM(53)DSK	0	1	0	O60684;O15131;P52294	O60684;P52294	O60684	KPNA6;KPNA5;KPNA1	Importin subunit alpha-7;Importin subunit alpha-6;Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.346545	1406.67854	1.0547	0.00074288	5.7684	0.0040629	6.8231	0.0048058	704.351478823471	12.387	0.10639	12.387	12.325	12.431	0	477	28	1.0055473068722	0.0181416924529938	1.0055473068722	406.70423203417	0	7.33759918252434						166	13	2	NaN	NaN	NaN	0.037638	1	15671	53.028	37.88	1	40982			15774	274;1208	13261	13649	15774	15774	49	
PLCELQPGAK	10	Unmodified	_PLCELQPGAK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.792066	1111.56958	1.0285	0.00057265	1.0199	0.00056786	2.0484	0.0011405	556.792914409516	5.4785	0.24829	5.4785	5.4076	5.6559	-8.8818E-16	636	49	0.898312834727904	0.032491664365396	0.898312834727904	364.269632115013	0	13.1755065358409						772	29	4	NaN	NaN	NaN	2.3518E-05	1	7033	131.22	105	1	387720			15775	565	13262	13650	15775	15775		
PLDETLK	7	Unmodified	_PLDETLK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.229094	814.443634	-0.84117	-0.00034339	2.0735	0.00084645	1.2323	0.00050306	408.230037819045	4.5386	0.37244	4.5386	4.4588	4.8312	0	783	46	0.798467866007927	0.0306711433873714	0.798467866007927	325.224570536522	0	12.4926873837687						754	43	4	NaN	NaN	NaN	0.0070186	1	1146	104.76	73.706	1	500770			15776	506	13263	13651	15776	15776		
PLDLEFMK	8	Unmodified	_PLDLEFMK_			0	0	0	Q9UH03	Q9UH03	Q9UH03	SEPT3	Neuronal-specific septin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.759704	991.504854	0.01276	6.3387E-06	-1.0114	-0.00050243	-0.99866	-0.00049609	496.759406253724	12.999	0.2128	12.999	12.928	13.141	0	675	49	0.871889544407995	0.0325548466595607	0.871889544407995	354.078724238051	0	13.22068677955						566	25	4	NaN	NaN	NaN	0.0018943	1	4089	79.809	0	1	336030			15777	3207	13264	13652	15777	15777		
PLDVAFMK	8	Unmodified	_PLDVAFMK_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.749139	919.483725	-1.3748	-0.00063343	0.28255	0.00013019	-1.0922	-0.00050325	460.749128524625	11.208	0.19507	11.208	11.137	11.332	0	759	49	0.814815566123307	0.0326863119165151	0.814815566123307	331.255105562402	0	13.2882926572763						475	23	3	NaN	NaN	NaN	0.054243	1	2695	37.722	19.32	1	145330			15778	1792	13265	13653	15778	15778		
PLEDQTQLLTLVCQLYQGK	19	Unmodified	_PLEDQTQLLTLVCQLYQGK_			0	0	0	P13284	P13284	P13284	IFI30	Gamma-interferon-inducible lysosomal thiol reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1124.08811	2246.16167	0.16087	0.00018083	-1.2801	-0.001439	-1.1192	-0.0012581	1124.58768822639	19.951	0.044318	19.951	19.942	19.986	0	69	37	1.27715511956461	0.0237455493197651	1.27715511956461	514.674996870197	0	9.56911211067103						119	6	5	NaN	NaN	NaN	6.0974E-05	1	35155	57.042	56.737	1	31055			15779	676	13266	13654	15779	15779		
PLEDQTQLLTLVCQLYQGK	19	Unmodified	_PLEDQTQLLTLVCQLYQGK_			0	0	0	P13284	P13284	P13284	IFI30	Gamma-interferon-inducible lysosomal thiol reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	749.727833	2246.16167	0.16752	0.0001256	-0.68273	-0.00051186	-0.5152	-0.00038626	750.061419186825	19.951	0.035465	19.951	19.942	19.978	0	453	31	1.02166545906632	0.0201365621499445	1.02166545906632	617.572847504185	0	12.1720803180045						128	5	6	NaN	NaN	NaN	7.4194E-11	1	35156	170.22	169.71	1	40682			15780	676	13266	13654	15780	15780		
PLEEEEMEVPVLPK	14	Unmodified	_PLEEEEMEVPVLPK_			0	0	0	P49790	P49790	P49790	NUP153	Nuclear pore complex protein Nup153	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.918389	1637.82223	1.6471	0.0013505	0.72317	0.00059294	2.3703	0.0019434	819.919710900422	13.345	0.16853	13.345	13.265	13.434	0	321	58	1.10999792833052	0.0380254184095288	1.10999792833052	448.33304087318	0	15.3586335892174						491	20	3	NaN	NaN	NaN	1.4634E-05	1	22711	99.174	93.787	1	102100			15781	1150	13267	13655	15781	15781		
PLEGQAEGDSGECK	14	Unmodified	_PLEGQAEGDSGECK_			0	0	0	Q9UKX7	Q9UKX7	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.817195	1475.61984	2.4015	0.0017743	-1.088	-0.00080382	1.3135	0.00097045	738.817142336587	2.7119	0.070959	2.7119	2.703	2.774	0	522	22	0.975277694896658	0.0141414531232522	0.975277694896658	394.281927275164	0	5.7170582502639						48	9	2	NaN	NaN	NaN	0.072354	1	17750	23.931	21.452	1	8637.4			15782	3270	13268	13656	15782	15782		
PLELELCPGR	10	Unmodified	_PLELELCPGR_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.310623	1182.60669	1.231	0.00072911	-1.0677	-0.00063239	0.16331	9.6728E-05	592.31000554298	11.367	0.22176	11.367	11.279	11.5	0	603	49	0.920633820089869	0.0324331596454394	0.920633820089869	373.046123912794	0	13.1421030033363						806	26	4	NaN	NaN	NaN	2.7717E-05	1	8944	103.8	94.29	1	299060			15783	3013	13269	13657	15783	15783		
PLELSDFR	8	Unmodified	_PLELSDFR_			0	0	0	P42167	P42167	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.758549	975.502546	0.042628	2.0835E-05	-1.748	-0.00085434	-1.7053	-0.0008335	488.758249291714	10.942	0.20397	10.942	10.862	11.066	0	714	46	0.845418525735192	0.03057744930274	0.845418525735192	343.405769582538	0	12.4204428812902						316	24	3	NaN	NaN	NaN	0.0076684	1	3746	56.014	41.479	1	86159			15784	1043	13270	13658	15784	15784		
PLEMIEPR	8	Unmodified	_PLEMIEPR_			0	0	0	P62249	P62249	P62249	RPS16	40S ribosomal protein S16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.762778	983.511002	0.32601	0.00016065	0.33516	0.00016516	0.66117	0.0003258	492.762798628117	8.2544	0.18634	8.2544	8.1745	8.3608	0	684	67	0.86578508874114	0.0448189089977539	0.86578508874114	351.638769354248	0	18.2032079423838						521	22	2	NaN	NaN	NaN	0.029936	1	3914	37.722	29.54	1	138830			15785	1372	13271	13659	15785	15785		
PLENLEEEGLPK	12	Unmodified	_PLENLEEEGLPK_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.356282	1366.69801	2.0708	0.0014172	0.05999	4.1055E-05	2.1308	0.0014582	684.356171311702	9.8864	0.23936	9.8864	9.7889	10.028	0	471	67	1.00957851518677	0.0443494447727779	1.00957851518677	408.450987093491	0	17.9427099745067						1434	28	5	NaN	NaN	NaN	8.6934E-08	1	14398	144.27	114.51	1	612590			15786	1790	13272	13660	15786	15786		
PLEPVSTVQVEPAVK	15	Unmodified	_PLEPVSTVQVEPAVK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.948338	1591.88212	2.7712	0.0022085	-0.5672	-0.00045203	2.204	0.0017565	796.947816477149	10.143	0.133	10.143	10.099	10.232	0	333	43	1.10198982404297	0.0280399540961984	1.10198982404297	445.206261672821	0	11.3282018293476						387	16	4	NaN	NaN	NaN	4.705E-06	1	21335	85.813	80.985	1	165230			15787	3422	13273	13661	15787	15787		
PLEPVSTVQVEPAVK	15	Unmodified	_PLEPVSTVQVEPAVK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.948338	1591.88212	1.884	0.0015014	0.57808	0.0004607	2.4621	0.0019621	796.948662825169	10.143	0.070951	10.143	10.108	10.179	0	384	31	1.06790610341098	0.0200727492241548	1.06790610341098	431.436360882691	0	8.1094338261754						143	9	3	NaN	NaN	NaN	0.031383	1	21336	38.584	37.327	1	35262			15788	3422	13273	13661	15788	15788		
PLEQEMPVQFQVVELPSGHHLCK	23	Unmodified	_PLEQEMPVQFQVVELPSGHHLCK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	676.341183	2701.33563	0.60188	0.00040708	-0.22905	-0.00015491	0.37284	0.00025216	676.591916511804	13.38	0.10643	13.38	13.345	13.451	0	597	34	0.924688525662974	0.0222962488144068	0.924688525662974	744.496712912176	0	17.9514328251197						438	13	6	NaN	NaN	NaN	0.0003022	1	37607	50.131	49.531	1	145390			15789	240	13274	13662	15789	15789		
PLEQEMPVQFQVVELPSGHHLCK	23	Unmodified	_PLEQEMPVQFQVVELPSGHHLCK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	901.452486	2701.33563	1.0494	0.00094596	0.34497	0.00031097	1.3943	0.0012569	901.787113958797	13.389	0.079849	13.389	13.345	13.425	0	465	49	1.01360860968299	0.0322363117711004	1.01360860968299	612.068033094093	0	19.4659119422006						327	10	4	NaN	NaN	NaN	0.061676	1	37608	5.5769	5.5345	1	59142			15790	240	13274	13662	15790	15790		
PLETLSR	7	Unmodified	_PLETLSR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.23471	814.454868	-1.1643	-0.00047532	0.82882	0.00033835	-0.3355	-0.00013696	408.234884661502	4.4322	0.1596	4.4322	4.3524	4.512	0	795	37	0.790287188799094	0.0245557049471467	0.790287188799094	321.892425697478	0	10.0018012972725						207	19	3	NaN	NaN	NaN	0.006659	1	1147	109.11	64.687	1	60057			15791	2149	13275	13663	15791	15791		
PLEVELR	7	Unmodified	_PLEVELR_			0	0	0	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.25036	854.486168	-0.43904	-0.00018802	-0.050363	-2.1568E-05	-0.4894	-0.00020959	428.250354999524	7.935	0.25724	7.935	7.8818	8.139	0	744	40	0.82502364452135	0.0265336280455829	0.82502364452135	335.780358651285	0	10.7990494583154						405	30	4	NaN	NaN	NaN	0.0030467	1	1631	117.62	40.787	1	312080			15792	1146	13276	13664	15792	15792		
PLFATNPFDQDVEK	14	Unmodified	_PLFATNPFDQDVEK_			0	0	0	Q92783	Q92783	Q92783	STAM	Signal transducing adapter molecule 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.898845	1619.78314	2.1922	0.0017777	3.8226	0.0030997	6.0148	0.0048774	811.403593322026	14.116	0.19507	14.116	14.036	14.232	0	357	46	1.08596037261705	0.0300738688612157	1.08596037261705	438.665125203537	0	12.1481020689253						426	23	3	NaN	NaN	NaN	7.8338E-05	1	22177	117.21	67.118	1	110520			15793	2432	13277	13665	15793	15793		
PLFCGNSEADQLGK	14	Unmodified	_PLFCGNSEADQLGK_			0	0	0	P11802	P11802	P11802	CDK4	Cyclin-dependent kinase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.361573	1534.70859	1.9867	0.0015265	-3.2663	-0.0025097	-1.2796	-0.00098319	768.360378778366	8.9553	0.25733	8.9553	8.8753	9.1326	0	438	70	1.03173026378327	0.0462534095691607	1.03173026378327	416.955160649838	0	18.6924804810837						539	30	4	NaN	NaN	NaN	7.7824E-05	1	19563	86.243	79.496	1	125080			15794	659	13278	13666	15794	15794		
PLFFADK	7	Unmodified	_PLFFADK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	419.228897	836.44324	-1.3757	-0.00057675	-1.5178	-0.0006363	-2.8935	-0.001213	419.228187925195	10.427	0.22168	10.427	10.321	10.543	0	837	28	0.761618911097395	0.0184488704959693	0.761618911097395	310.080578337917	0	7.51115334679491						360	26	3	NaN	NaN	NaN	0.057694	1	1386	56.091	0	1	108790			15795	573	13279	13667	15795	15795		
PLFHGDSEIDQLFR	14	Unmodified	_PLFHGDSEIDQLFR_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.61425	1672.82092	-1.249	-0.00069773	-0.66244	-0.00037005	-1.9115	-0.0010678	558.613890300196	14.684	0.11529	14.684	14.639	14.755	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	502.228023879398	0	13.5961718092521						317	14	4	NaN	NaN	NaN	4.1602E-06	1	23693	141.29	131.55	1	119060			15796	540	13280	13668	15796	15796		
PLFLVHPIEGSTTVFHSLASR	21	Unmodified	_PLFLVHPIEGSTTVFHSLASR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	577.816664	2307.23755	-0.017966	-1.0381E-05	1.5182	0.00087726	1.5003	0.00086688	578.068085001556	15.012	0.079824	15.012	14.967	15.047	0	576	28	0.938871150116794	0.0182297522282956	0.938871150116794	756.5757937321	0	14.6901832695003						166	10	4	NaN	NaN	NaN	0.046567	1	35696	6.9894	6.9894	1	34092			15797	1127	13281	13669	15797	15797		
PLFNMEDK	8	Unmodified	_PLFNMEDK_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.239135	992.463718	-0.10807	-5.3737E-05	-0.53139	-0.00026423	-0.63946	-0.00031797	497.238945671962	8.6623	0.20415	8.6623	8.6002	8.8044	0	714	46	0.845418525735192	0.03057744930274	0.845418525735192	343.324169329254	0	12.417491529348						556	24	4	NaN	NaN	NaN	0.00032562	1	4104	99.305	85.657	1	205450			15798	1706	13282	13670	15798	15798		
PLFPHVLCHNCAVEFNFGQK	20	Unmodified	_PLFPHVLCHNCAVEFNFGQK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	604.29377	2413.14598	0.29016	0.00017534	-0.15396	-9.3035E-05	0.1362	8.2306E-05	604.544592128666	13.425	0.17738	13.425	13.38	13.558	0	621	79	0.908462957275599	0.0527404460650701	0.908462957275599	731.8797148045	0	42.4889780212092						985	21	6	NaN	NaN	NaN	8.8395E-08	1	36412	102.57	99.661	1	481120			15799	1509	13283	13671	15799	15799		
PLFPHVLCHNCAVEFNFGQK	20	Unmodified	_PLFPHVLCHNCAVEFNFGQK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	805.389268	2413.14598	1.3174	0.001061	0.23631	0.00019032	1.5537	0.0012513	805.723737394665	13.425	0.19508	13.425	13.389	13.584	0	513	58	0.981336640919867	0.0383786491892638	0.981336640919867	592.942801362713	0	23.189130838392						943	23	6	NaN	NaN	NaN	2.3957E-16	1	36413	155.34	148.81	1	286200			15800	1509	13283	13671	15800	15800		
PLFPTCPVPEEAAK	14	Unmodified	_PLFPTCPVPEEAAK_			0	0	0	Q01650;Q9GIP4	Q01650	Q01650	SLC7A5;SLC7A5P2	Large neutral amino acids transporter small subunit 1;Putative L-type amino acid transporter 1-like protein IMAA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.394884	1554.77522	2.3862	0.0018574	-1.07	-0.00083289	1.3162	0.0010245	778.393907869019	11.35	0.13306	11.35	11.296	11.429	0	327	64	1.10599442759226	0.0420223118380454	1.10599442759226	446.916097845324	0	16.98059878112						645	16	3	NaN	NaN	NaN	0.00619	1	20199	18.098	17.046	1	138260			15801	1518	13284	13672	15801	15801		
PLFQALIDGFR	11	Unmodified	_PLFQALIDGFR_			0	0	0	P22681	P22681	P22681	CBL	E3 ubiquitin-protein ligase CBL	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.856055	1275.69756	-0.14331	-9.1553E-05	1.2356	0.00078939	1.0923	0.00069784	638.857436384538	18.763	0.070939	18.763	18.745	18.816	0	582	25	0.934820374997243	0.0162053462177963	0.934820374997243	378.475679123841	0	6.56097104776467						91	9	2	NaN	NaN	NaN	2.5824E-05	1	11658	81.099	72.336	1	20974			15802	809	13285	13673	15802	15802		
PLFQFFVPDALNDR	14	Unmodified	_PLFQFFVPDALNDR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.933022	1677.85149	1.0141	0.00085177	-0.36112	-0.00030332	0.65297	0.00054845	839.933132506136	19.25	0.097542	19.25	19.206	19.304	0	351	64	1.08996939197032	0.0421034272006935	1.08996939197032	440.155322440955	0	17.0023559486295						327	12	4	NaN	NaN	NaN	1.1085E-05	1	23859	65.408	62.736	1	73252			15803	2420	13286	13674	15803	15803		
PLFQFFVPDALNDRHPDVR	19	Unmodified	_PLFQFFVPDALNDRHPDVR_			0	0	1	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	571.547185	2282.15964	-0.81066	-0.00046333	-0.93395	-0.0005338	-1.7446	-0.00099712	571.797441513387	15.925	0.15075	15.925	15.881	16.032	0	678	31	0.869855008346864	0.0203496003822382	0.869855008346864	701.006177794526	0	16.3995096271382						381	18	5	NaN	NaN	NaN	0.02719	1	35488	29.98	29.545	1	128400			15804	2420	13287	13675	15804	15804		
PLFTALVTQCQK	12	Unmodified	_PLFTALVTQCQK_			0	0	0	Q8NCW5	Q8NCW5	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.379037	1404.74352	1.9875	0.001398	-7.4406	-0.0052335	-5.453	-0.0038355	703.374279034444	12.839	0.12414	12.839	12.813	12.937	1.7764E-15	471	16	1.00957851518677	0.0100745405367657	1.00957851518677	408.340225236906	0	4.07480952700365						129	15	3	NaN	NaN	NaN	5.4335E-05	1	15615	116.13	104.17	1	52249			15805	2302	13288	13676	15805	15805		
PLFVNVNDQTNEGIMHESK	19	Unmodified	_PLFVNVNDQTNEGIMHESK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.52314	2171.03172	1.2495	0.0013576	0.29341	0.0003188	1.5429	0.0016764	1087.02491877142	10.72	0.044346	10.72	10.693	10.738	0	132	46	1.23554629282893	0.0297572623085223	1.23554629282893	498.013157068121	0	11.9942961538417						131	6	3	NaN	NaN	NaN	0.0019809	1	34324	59.67	45.308	1	18772			15806	922	13289	13677	15806	15806		
PLFVNVNDQTNEGIMHESK	19	Unmodified	_PLFVNVNDQTNEGIMHESK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.684516	2171.03172	1.8451	0.0013371	-0.024704	-1.7902E-05	1.8204	0.0013192	725.01918572456	10.72	0.31037	10.72	10.667	10.977	0	522	109	0.975277694896658	0.0727728766116315	0.975277694896658	589.657824589989	0	43.9988490832011						1744	36	6	NaN	NaN	NaN	2.9109E-46	1	34325	300.3	263.35	1	1173800			15807	922	13289	13677	15807	15807		
PLFVNVNDQTNEGIMHESK	19	Oxidation (M)	_PLFVNVNDQTNEGIM(Oxidation (M))HESK_	PLFVNVNDQTNEGIM(1)HESK	PLFVNVNDQTNEGIM(240)HESK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	730.016154	2187.02663	1.3218	0.00096492	0.52402	0.00038255	1.8458	0.0013475	730.350869345363	8.8931	0.15089	8.8931	8.8487	8.9996	0	546	94	0.959108205975751	0.0627132284996856	0.959108205975751	579.854728744388	0	37.9149733823564						1112	18	5	NaN	NaN	NaN	2.3622E-26	1	34544	239.37	196.06	1	347520			15808	922	13289	13678	15808	15808	316	
PLFWAGLR	8	Unmodified	_PLFWAGLR_			0	0	0	P50336	P50336	P50336	PPOX	Protoporphyrinogen oxidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.276712	958.538872	-1.319	-0.00063348	-3.3603	-0.0016139	-4.6793	-0.0022474	480.275781031167	14.595	0.097526	14.595	14.56	14.657	0	744	37	0.82502364452135	0.0244840671338465	0.82502364452135	335.203885158473	0	9.94778086936856						148	12	2	NaN	NaN	NaN	0.0034268	1	3413	75.915	49.692	1	38212			15809	1160	13290	13679	15809	15809		
PLGTQVAVAVHQWLDIPEK	19	Unmodified	_PLGTQVAVAVHQWLDIPEK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.052868	2100.13677	0.3242	0.00022728	3.2022	0.0022449	3.5264	0.0024722	701.054468437942	17.965	0.16844	17.965	17.867	18.036	0	471	52	1.00957851518677	0.0342629150938795	1.00957851518677	610.52712308386	0	20.7199724103309						289	20	2	NaN	NaN	NaN	0.014586	1	33326	32.692	29.251	1	99318			15810	1154	13291	13680	15810	15810		
PLGVIWGK	8	Unmodified	_PLGVIWGK_			0	0	0	Q8WVY7	Q8WVY7	Q8WVY7	UBLCP1	Ubiquitin-like domain-containing CTD phosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.265813	868.517074	-2.6029	-0.001133	0.31826	0.00013853	-2.2847	-0.00099443	435.265861696815	11.128	0.08868	11.128	11.092	11.181	0	777	25	0.802556497112065	0.0163522499663766	0.802556497112065	326.552965778406	0	6.65358232459045						120	11	2	NaN	NaN	NaN	0.058264	1	1846	42.229	19.842	1	29076			15811	2384	13292	13681	15811	15811		
PLHELIMQLLEETPEEK	17	Unmodified	_PLHELIMQLLEETPEEK_			0	0	0	P68402	P68402	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.690608	2048.04999	-0.44366	-0.00030333	-1.2444	-0.0008508	-1.6881	-0.0011541	684.024062151695	18.444	0.070937	18.444	18.408	18.479	0	669	82	0.875957769340875	0.0548715642727126	0.875957769340875	529.810446761308	0	33.1882757358187						428	9	4	NaN	NaN	NaN	4.8093E-05	1	32509	63.766	56.91	1	88319			15812	1451	13293	13682	15812	15812		
PLHELIMQLLEETPEEK	17	Unmodified	_PLHELIMQLLEETPEEK_			0	0	0	P68402	P68402	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.03227	2048.04999	1.2342	0.0012651	-0.94512	-0.00096878	0.28905	0.00029628	1025.53323594006	18.435	0.11535	18.435	18.399	18.515	0	147	73	1.22562176648663	0.0476998736599445	1.22562176648663	494.201422717937	0	19.2337849006923						483	14	4	NaN	NaN	NaN	0.040864	1	32510	34.338	31.949	1	100210			15813	1451	13293	13682	15813	15813		
PLHFTYNSCPEGAR	14	Unmodified	_PLHFTYNSCPEGAR_			0	0	0	Q15386	Q15386	Q15386	UBE3C	Ubiquitin-protein ligase E3C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.256068	1647.74637	-1.0158	-0.00055897	-1.0957	-0.0006029	-2.1115	-0.0011619	550.255516143881	6.658	0.070962	6.658	6.6225	6.6934	0	750	22	0.820941264895493	0.0142913101718418	0.820941264895493	497.345023326417	0	8.65800306881215						106	9	3	NaN	NaN	NaN	0.0038414	1	22960	39.293	34.765	1	18658			15814	1838	13294	13683	15814	15814		
PLHISTFINELDSGFR	16	Unmodified	_PLHISTFINELDSGFR_			0	0	0	Q15631	Q15631	Q15631	TSN	Translin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.987976	1844.9421	-0.6417	-0.00039528	-0.93663	-0.00057695	-1.5783	-0.00097223	615.987469098115	17.743	0.079791	17.743	17.716	17.796	0	705	49	0.851531465363931	0.0325819812150898	0.851531465363931	515.417766424086	0	19.7213287666076						250	10	3	NaN	NaN	NaN	0.0028168	1	28362	78.043	74.538	1	60869			15815	1857	13295	13684	15815	15815		
PLIACVEK	8	Unmodified	_PLIACVEK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.259871	928.505189	-0.29227	-0.00013598	-2.1641	-0.0010069	-2.4564	-0.0011429	465.260132056997	6.3653	0.25711	6.3653	6.321	6.5781	0	720	40	0.841341816837976	0.0265004542713385	0.841341816837976	341.990178469989	0	10.7719536868523						292	30	2	NaN	NaN	NaN	0.0025753	1	2849	85.813	74.164	1	99931			15816	1696	13296	13685	15816	15816		
PLILQSLGPK	10	Unmodified	_PLILQSLGPK_			0	0	0	Q9Y5K6	Q9Y5K6	Q9Y5K6	CD2AP	CD2-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.336967	1064.65938	-0.67985	-0.00036259	-0.30638	-0.0001634	-0.98623	-0.00052599	533.336868713314	11.953	0.11527	11.953	11.908	12.024	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	364.466138867497	0	8.23913227787841						225	14	3	NaN	NaN	NaN	0.00043462	1	5842	86.205	58.501	1	73186			15817	3435	13297	13686	15817	15817		
PLIPLSLK	8	Unmodified	_PLIPLSLK_			0	0	0		REV__O94827	REV__O94827			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.796946	879.57934	-1.8621	-0.0008208	0.38799	0.00017102	-1.4741	-0.00064977	440.797300451015	12.192	0.23945	12.192	12.121	12.361	0	753	49	0.81889964927511	0.0326635887437258	0.81889964927511	333.13766470152	0	13.2879183481003						709	28	4	NaN	NaN	NaN	0.015371	1	2004	63.301	23.099	1	653990	+		15818	3484	13298	13687	15818	15818		
PLIQQAMAK	9	Unmodified	_PLIQQAMAK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.28642	998.558287	0.52761	0.00026396	1.062	0.00053129	1.5896	0.00079525	500.287058430698	6.25	0.11531	6.25	6.2146	6.3299	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	364.774081605232	0	8.24609364048428						161	14	3	NaN	NaN	NaN	0.034549	1	4258	51.43	20.868	1	36359			15819	2064	13299	13688	15819	15819		
PLISVYSEK	9	Unmodified	_PLISVYSEK_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.289682	1034.56481	1.3347	0.00069175	-0.38533	-0.00019971	0.94934	0.00049203	518.289636792164	8.2898	0.36367	8.2898	8.1922	8.5559	0	669	58	0.875957769340875	0.0386454712216178	0.875957769340875	355.528172864729	0	15.6851782743553						1317	42	5	NaN	NaN	NaN	6.0814E-06	1	5111	137.84	104.03	1	1916800			15820	988	13300	13689	15820	15820		
PLIVVANK	8	Unmodified	_PLIVVANK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.278921	852.543289	-1.7963	-0.0007675	-1.7409	-0.00074385	-3.5372	-0.0015114	427.278163455024	12.626	0.16846	12.626	12.564	12.733	0	819	31	0.773912161060781	0.0204801911124388	0.773912161060781	314.989597407958	0	8.33563223054006						258	20	3	NaN	NaN	NaN	0.046964	1	1607	37.608	6.5499	1	80969			15821	2808	13301	13690	15821	15821		
PLIVVANK	8	Unmodified	_PLIVVANK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.278921	852.543289	-1.3009	-0.00055586	-1.8463	-0.00078887	-3.1472	-0.0013447	427.277954661015	6.72	0.1862	6.72	6.6757	6.8619	0	801	34	0.78619514174348	0.0225109626091257	0.78619514174348	319.988887700827	0	9.1621755260341						327	22	3	NaN	NaN	NaN	0.00045899	1	1608	110.23	53.341	1	110550			15822	2808	13301	13690	15822	15822		
PLIWIESVIEK	11	Unmodified	_PLIWIESVIEK_			0	0	0	Q9BXS5;Q9Y6Q5	Q9BXS5	Q9BXS5	AP1M1;AP1M2	AP-1 complex subunit mu-1;AP-1 complex subunit mu-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.887021	1325.75949	-0.057565	-3.8217E-05	-0.37482	-0.00024884	-0.43239	-0.00028706	663.886511159369	17.929	0.11524	17.929	17.894	18.009	0	525	28	0.973257487423603	0.0181843844613631	0.973257487423603	393.878110459033	0	7.35923543774896						187	14	3	NaN	NaN	NaN	0.004415	1	13172	37.749	29.276	1	47320			15823	2787	13302	13691	15823	15823		
PLLASCGLDR	10	Unmodified	_PLLASCGLDR_			0	0	0	Q6RFH5	Q6RFH5	Q6RFH5	WDR74	WD repeat-containing protein 74	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.289691	1100.56483	0.51845	0.00028582	-1.8176	-0.001002	-1.2992	-0.00071622	551.289008137123	7.8995	0.15073	7.8995	7.8463	7.997	-8.8818E-16	624	22	0.906433495720521	0.0142062317048673	0.906433495720521	367.607616020923	0	5.76139230767939						185	18	3	NaN	NaN	NaN	0.01222	1	6736	65.404	52.577	1	67771			15824	2081	13303	13692	15824	15824		
PLLDDFLFR	9	Unmodified	_PLLDDFLFR_			0	0	0	Q9UPU5	Q9UPU5	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.310949	1134.60735	0.26089	0.00014827	-1.4731	-0.00083719	-1.2122	-0.00068892	568.310169400897	18.373	0.15077	18.373	18.337	18.488	0	615	31	0.912521036363781	0.0202875850561227	0.912521036363781	369.939096695797	0	8.22465520324641						239	18	3	NaN	NaN	NaN	0.00081495	1	7667	79.809	56.234	1	80112			15825	3316	13304	13693	15825	15825		
PLLDEIVPVYR	11	Unmodified	_PLLDEIVPVYR_			0	0	0	Q9H3P7	Q9H3P7	Q9H3P7	ACBD3	Golgi resident protein GCP60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.37682	1312.73909	0.62775	0.00041267	0.15233	0.00010014	0.78008	0.00051281	657.376950808921	15.828	0.17738	15.828	15.775	15.952	0	501	49	0.98941132619024	0.0322987503458569	0.98941132619024	400.456545186668	0	13.0726681967067						635	21	4	NaN	NaN	NaN	2.4053E-07	1	12744	98.009	64.583	1	272360			15826	2882	13305	13694	15826	15826		
PLLDHSYDPDFNQLDGPTR	19	Unmodified	_PLLDHSYDPDFNQLDGPTR_			0	0	0	Q9UET6	Q9UET6	Q9UET6	FTSJ1	Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.01503	2199.02326	-0.21043	-0.00015446	0.49915	0.00036638	0.28872	0.00021193	734.34971827297	12.041	0.070928	12.041	12.015	12.086	0	609	34	0.916577990479294	0.0223117043347298	0.916577990479294	554.122875790251	0	13.4886784301654						215	9	4	NaN	NaN	NaN	1.2508E-09	1	34664	165.72	158.08	1	45689			15827	3199	13306	13695	15827	15827		
PLLESGTLGTK	11	Unmodified	_PLLESGTLGTK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.318971	1114.62339	1.2431	0.00069404	-1.8778	-0.0010484	-0.63474	-0.00035439	558.317941554821	7.9527	0.21302	7.9527	7.864	8.077	-8.8818E-16	606	37	0.918606045818476	0.0243349817538098	0.918606045818476	372.486128509251	0	9.86760666564464						322	25	2	NaN	NaN	NaN	0.00091667	1	7128	81.163	29.733	1	137710			15828	804	13307	13696	15828	15828		
PLLFMDLLDER	11	Unmodified	_PLLFMDLLDER_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.360313	1360.70607	0.78147	0.00053246	-0.3935	-0.00026811	0.38797	0.00026435	681.359510419462	19.774	0.1064	19.774	19.729	19.836	0	492	34	0.995464410099171	0.0221915758833877	0.995464410099171	402.758522538858	0	8.97856942440745						218	13	4	NaN	NaN	NaN	0.00081968	1	14232	41.824	33.35	1	61748			15829	2465	13308	13697	15829	15829		
PLLGDQSHAGSELLQR	16	Unmodified	_PLLGDQSHAGSELLQR_			0	0	0	Q12933	Q12933	Q12933	TRAF2	TNF receptor-associated factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.304075	1719.8904	-1.3462	-0.00077313	-2.4856	-0.0014275	-3.8318	-0.0022006	574.302055311134	9.0794	0.13303	9.0794	9.0351	9.1681	0	774	55	0.804600385996946	0.036761875300818	0.804600385996946	487.275023932646	0	22.2634042672247						279	16	4	NaN	NaN	NaN	6.7256E-05	1	25063	81.48	80.599	1	98120			15830	1609	13309	13698	15830	15830		
PLLGGDVSAPEGTK	14	Unmodified	_PLLGGDVSAPEGTK_			0	0	0	Q8IY22	Q8IY22	Q8IY22	CMIP	C-Maf-inducing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.856449	1339.69835	1.6645	0.0011166	-0.71333	-0.00047854	0.95113	0.00063807	670.855543085953	8.0325	0.10656	8.0325	7.997	8.1036	0	477	55	1.0055473068722	0.0363109867512514	1.0055473068722	406.902149601736	0	14.6935091589104						248	13	3	NaN	NaN	NaN	0.0041369	1	13588	47.361	31.779	1	51645			15831	2217	13310	13699	15831	15831		
PLLGLILLNEK	11	Unmodified	_PLLGLILLNEK_			0	0	0	Q9UIA9;Q9H2T7	Q9UIA9	Q9UIA9	XPO7;RANBP17	Exportin-7;Ran-binding protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.892106	1221.76966	-0.19702	-0.00012055	-0.031965	-1.9559E-05	-0.22898	-0.00014011	611.89205634056	18.222	0.079814	18.222	18.195	18.275	0	531	31	0.969216233931596	0.0202118620218336	0.969216233931596	392.586797483835	0	8.18693487019823						174	10	3	NaN	NaN	NaN	0.0081299	1	10078	44.82	44.114	1	42738			15832	3235	13311	13700	15832	15832		
PLLIDMNK	8	Unmodified	_PLLIDMNK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.267696	942.520839	-0.30615	-0.00014459	-2.0694	-0.00097733	-2.3756	-0.0011219	472.267119949091	10.161	0.25716	10.161	10.108	10.365	0	723	49	0.839303037468863	0.0326272809227941	0.839303037468863	341.087468241438	0	13.2595214704806						495	30	3	NaN	NaN	NaN	0.0018708	1	3107	89.123	67.195	1	200260			15833	1816	13312	13701	15833	15833		
PLLNDGQFR	9	Unmodified	_PLLNDGQFR_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.282723	1058.55089	0.5203	0.00027591	2.5454	0.0013498	3.0657	0.0016257	530.284904959781	8.21	0.16853	8.21	8.1656	8.3342	0	657	43	0.884090832094921	0.0284657258071274	0.884090832094921	358.722366125987	0	11.5500490948762						346	20	4	NaN	NaN	NaN	0.02675	1	5684	58.426	40.09	1	65001			15834	826	13313	13702	15834	15834		
PLLPEPEEK	9	Unmodified	_PLLPEPEEK_			0	0	0	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.28714	1050.55973	0.68113	0.00035847	1.4778	0.00077776	2.159	0.0011362	526.288008511216	7.5358	0.28387	7.5358	7.4117	7.6956	0	630	58	0.902373728295776	0.0385918846730076	0.902373728295776	366.17647332489	0	15.6602965992942						749	33	3	NaN	NaN	NaN	0.00033801	1	5490	65.156	54.454	1	246560			15835	785	13314	13703	15835	15835		
PLLPSQLVR	9	Unmodified	_PLLPSQLVR_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.821484	1021.62842	0.34259	0.00017534	-0.34381	-0.00017597	-0.0012179	-6.2334E-07	511.82131079406	11.279	0.13307	11.279	11.234	11.367	0	660	43	0.882057989648486	0.0284657258071274	0.882057989648486	358.063612177749	0	11.5554087433903						309	16	3	NaN	NaN	NaN	5.1209E-05	1	4783	97.033	50.197	1	99001			15836	702	13315	13704	15836	15836		
PLLPVGNK	8	Unmodified	_PLLPVGNK_			0	0	0	Q9NR50	Q9NR50	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	419.263271	836.511988	-1.5582	-0.00065328	-1.3863	-0.0005812	-2.9444	-0.0012345	419.262838532173	7.2875	0.097553	7.2875	7.2343	7.3319	0	801	25	0.78619514174348	0.0163727478201636	0.78619514174348	320.085960407717	0	6.66588539189979						148	12	2	NaN	NaN	NaN	0.040236	1	1390	44.42	21.111	1	48042			15837	3015	13316	13705	15837	15837		
PLLQEELGR	9	Unmodified	_PLLQEELGR_			0	0	0	P56182	P56182	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.798206	1053.58186	0.26241	0.0001385	-1.3249	-0.00069928	-1.0625	-0.00056078	527.797802432862	8.8487	0.20401	8.8487	8.769	8.973	0	669	34	0.875957769340875	0.0223767933297507	0.875957769340875	355.443897447766	0	9.07999781712607						330	24	3	NaN	NaN	NaN	0.00012917	1	5563	113.7	88.847	1	114880			15838	1283	13317	13706	15838	15838		
PLLQNTVDK	9	Unmodified	_PLLQNTVDK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.292756	1026.57096	0.90342	0.00046462	-0.98024	-0.00050413	-0.07682	-3.9508E-05	514.292316692062	5.5405	0.13298	5.5405	5.5051	5.6381	0	657	31	0.884090832094921	0.0203270164952024	0.884090832094921	358.865860338976	0	8.2510438948791						195	16	3	NaN	NaN	NaN	0.0012439	1	4903	95.311	67.606	1	39743			15839	2080	13318	13707	15839	15839		
PLLQQGLSDAEEFVIVK	17	Unmodified	_PLLQQGLSDAEEFVIVK_			0	0	0	Q99570	Q99570	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.517116	1885.01968	0.36512	0.0003445	-0.59139	-0.00055799	-0.22627	-0.00021349	943.516558184343	18.231	0.044314	18.231	18.213	18.257	0	165	22	1.21370334790578	0.0139095915497522	1.21370334790578	489.680519049437	0	5.61196112839349						92	6	4	NaN	NaN	NaN	0.040143	1	29272	23.931	23.05	1	13974			15840	2651	13319	13708	15840	15840		
PLLQVSR	7	Unmodified	_PLLQVSR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.75307	811.491587	-1.8961	-0.00077126	0.043648	1.7754E-05	-1.8525	-0.00075351	406.753019701271	6.3033	0.13305	6.3033	6.2678	6.4008	8.8818E-16	819	28	0.773912161060781	0.0184308879834895	0.773912161060781	315.241749975634	0	7.50755146883364						174	16	3	NaN	NaN	NaN	0.025625	1	1108	51.456	13.848	1	41716			15841	972	13320	13709	15841	15841		
PLLSFISPSIPITFLR	16	Unmodified	_PLLSFISPSIPITFLR_			0	0	0	O00505;O00629	O00505;O00629	O00629	KPNA3;KPNA4	Importin subunit alpha-4;Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.034748	1800.05494	1.0313	0.00092923	0.05285	4.762E-05	1.0841	0.00097685	901.53600191261	20.084	0.035451	20.084	20.084	20.119	0	240	58	1.16393748060522	0.0379000734883808	1.16393748060522	469.763901386405	0	15.2964284434551						166	5	4	NaN	NaN	NaN	2.7471E-05	1	27221	95.138	91.633	1	50469			15842	96;87	13321	13710	15842	15842		
PLLTGLMWAQQGTTPGTPK	19	Unmodified	_PLLTGLMWAQQGTTPGTPK_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.029868	1996.04518	1.6299	0.0016283	-0.46831	-0.00046786	1.1616	0.0011605	999.531651575704	15.801	0.079829	15.801	15.757	15.837	0	192	37	1.1958073123591	0.0238761260820608	1.1958073123591	482.264068189336	0	9.62914139922765						330	10	4	NaN	NaN	NaN	3.1976E-05	1	31567	93.649	88.307	1	102570			15843	1701	13322	13711	15843	15843		
PLMGVIYVPLTDK	13	Unmodified	_PLMGVIYVPLTDK_			0	0	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.407263	1444.79997	1.1839	0.00085647	0.32089	0.00023213	1.5048	0.0010886	723.407374476481	16.608	0.17733	16.608	16.555	16.732	0	423	64	1.04178812298108	0.0422546944183948	1.04178812298108	421.253983502749	0	17.0859678208902						627	21	4	NaN	NaN	NaN	0.0041382	1	16832	71.066	49.915	1	288660			15844	799	13323	13712	15844	15844		
PLMLIAPK	8	Unmodified	_PLMLIAPK_			0	0	0	Q9H2P0	Q9H2P0	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.777699	881.540846	-2.8035	-0.0012385	0.15567	6.8772E-05	-2.6478	-0.0011697	441.777852577213	10.702	0.097545	10.702	10.658	10.755	0	795	22	0.790287188799094	0.0143191751131978	0.790287188799094	321.486801784791	0	5.82500371584365						105	12	2	NaN	NaN	NaN	0.040236	1	2035	35.633	13.705	1	22157			15845	2871	13324	13713	15845	15845		
PLMTELLK	8	Unmodified	_PLMTELLK_			0	0	0	Q92973;O14787	Q92973	Q92973	TNPO1;TNPO2	Transportin-1;Transportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.777896	943.54124	-0.1953	-9.2332E-05	-0.47864	-0.00022629	-0.67393	-0.00031862	472.77788070829	12.387	0.32803	12.387	12.334	12.662	0	705	55	0.851531465363931	0.0366649158136713	0.851531465363931	346.051637912843	0	14.9001589340388						792	38	5	NaN	NaN	NaN	0.0012652	1	3133	101.41	54.063	1	659510			15846	2448	13325	13714	15846	15846		
PLNIPELLFATDR	13	Unmodified	_PLNIPELLFATDR_			0	0	0	Q8WU76	Q8WU76	Q8WU76	SCFD2	Sec1 family domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.916841	1497.81913	0.48356	0.00036263	-0.93452	-0.00070081	-0.45096	-0.00033818	749.915934869261	18.914	0.1064	18.914	18.887	18.993	0	423	37	1.04178812298108	0.0241371995197355	1.04178812298108	421.112538990809	0	9.75676065954548						219	13	3	NaN	NaN	NaN	0.0041182	1	18478	43.306	40.427	1	50881			15847	2363	13326	13715	15847	15847		
PLNPNFCFLQCTSAYPLQPEDVNLR	25	Unmodified	_PLNPNFCFLQCTSAYPLQPEDVNLR_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	998.480992	2992.42115	0.68971	0.00068866	0.55593	0.00055508	1.2456	0.0012437	999.150292286721	18.213	0.11529	18.213	18.151	18.266	0	411	49	1.04982941439551	0.0321474274065014	1.04982941439551	633.62410975792	0	19.4025665428517						422	14	5	NaN	NaN	NaN	3.5925E-06	1	38212	63.421	62.522	1	71749			15848	3013	13327	13716	15848	15848		
PLNYQILLK	9	Unmodified	_PLNYQILLK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.336967	1100.65938	0.051114	2.8181E-05	-1.882	-0.0010376	-1.8309	-0.0010094	551.336487226854	13.034	0.15067	13.034	12.99	13.141	0	618	43	0.910492137470517	0.0283986853568062	0.910492137470517	369.253221935889	0	11.5171846468403						287	18	2	NaN	NaN	NaN	0.001349	1	6747	79.809	69.107	1	153060			15849	2900	13328	13717	15849	15849		
PLPEPSEQEGESVK	14	Unmodified	_PLPEPSEQEGESVK_			0	0	0	Q96CP2;Q4VC44	Q96CP2	Q96CP2	FLYWCH2;FLYWCH1	FLYWCH family member 2;FLYWCH-type zinc finger-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.37266	1524.73077	2.5256	0.001928	-1.474	-0.0011252	1.0516	0.00080274	763.371494980534	5.7889	0.26603	5.7889	5.6825	5.9485	0	465	70	1.01360860968299	0.0463237128819054	1.01360860968299	409.655577942352	0	18.7219871573581						1208	31	4	NaN	NaN	NaN	0.00015709	1	19263	78.043	72.892	1	411400			15850	2495	13329	13718	15850	15850		
PLPEVTDEYK	10	Unmodified	_PLPEVTDEYK_			0	0	0	P05455	P05455	P05455	SSB	Lupus La protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.800611	1189.58667	1.7159	0.0010224	0.41347	0.00024635	2.1294	0.0012687	595.800891015441	7.9793	0.29269	7.9793	7.8818	8.1745	-8.8818E-16	567	49	0.944945209309785	0.0323792954262402	0.944945209309785	382.871324727643	0	13.1193889459977						677	34	2	NaN	NaN	NaN	0.0076033	1	9144	49.16	33.578	1	627070			15851	533	13330	13719	15851	15851		
PLPEYHVR	8	Unmodified	_PLPEYHVR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	337.518781	1009.53451	-1.2043	-0.00040647	-1.2363	-0.00041728	-2.4406	-0.00082375	337.518525096076	4.911	0.11527	4.911	4.8578	4.9731	0	909	22	0.712342960434231	0.0143952206507976	0.712342960434231	433.817207828312	0	8.7666963466512						183	14	3	NaN	NaN	NaN	0.031475	1	4500	24.851	19.103	1	48268			15852	1465	13331	13720	15852	15852		
PLPFGTLGVHK	11	Unmodified	_PLPFGTLGVHK_			0	0	0	P49916	P49916	P49916	LIG3	DNA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.229119	1164.66553	-1.8661	-0.00072635	-0.0084064	-3.272E-06	-1.8745	-0.00072962	389.229109254326	10.108	0.088655	10.108	10.064	10.152	0	843	19	0.757518876820989	0.0123018175382856	0.757518876820989	460.503627896298	0	7.4784032179802						131	11	3	NaN	NaN	NaN	0.050628	1	8475	22.044	11.342	1	31173			15853	1156	13332	13721	15853	15853		
PLPGEEPLFTIPHTQEAFR	19	Unmodified	_PLPGEEPLFTIPHTQEAFR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.044261	2178.11095	0.83664	0.00060828	-0.1324	-9.6264E-05	0.70424	0.00051201	727.378352870286	14.631	0.133	14.631	14.551	14.684	1.7764E-15	507	91	0.985374541851584	0.0606104815894346	0.985374541851584	595.750130213913	0	36.6446470510422						758	16	4	NaN	NaN	NaN	0.00085259	1	34424	61.067	54.545	1	164680			15854	3238	13333	13722	15854	15854		
PLPPAPAPDEYLVSPITGEK	20	Unmodified	_PLPPAPAPDEYLVSPITGEK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.05406	2090.09357	1.0966	0.0011472	0.45939	0.00048055	1.556	0.0016277	1046.55603542063	14.861	0.12413	14.861	14.808	14.932	0	195	103	1.19381749893585	0.0675655960535073	1.19381749893585	481.311931644747	0	27.2404513907948						949	15	4	NaN	NaN	NaN	0.0086439	1	33191	32.6	26.395	1	248450			15855	1852	13334	13723	15855	15855		
PLPPPPTQTEEEEDPAMK	18	Unmodified	_PLPPPPTQTEEEEDPAMK_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.47479	2004.93502	2.5152	0.0025239	-1.1856	-0.0011897	1.3296	0.0013342	1003.47396503614	8.2011	0.17742	8.2011	8.139	8.3164	0	291	28	1.12999890578964	0.017989734652339	1.12999890578964	455.709860837703	0	7.2549623127253						391	21	4	NaN	NaN	NaN	0.0079137	1	31715	27.357	23.852	1	91827			15856	1568	13335	13724	15856	15856		
PLPQLEPQAEVFTK	14	Unmodified	_PLPQLEPQAEVFTK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.935231	1595.85591	1.9487	0.0015569	-0.096905	-7.7421E-05	1.8518	0.0014795	798.93521639454	13.008	0.15959	13.008	12.928	13.088	0	354	34	1.08796502040166	0.0220511287712513	1.08796502040166	439.530768949367	0	8.90851213346122						491	19	6	NaN	NaN	NaN	0.0043595	1	21456	46.068	40.917	1	124950			15857	1668	13336	13725	15857	15857		
PLPSDIAVIMYTSGSTGLPK	20	Unmodified	_PLPSDIAVIMYTSGSTGLPK_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.030853	2046.07073	0.34449	0.00023529	1.9467	0.0013297	2.2912	0.001565	683.366676661017	17.982	0.10639	17.982	17.938	18.045	0	441	22	1.02971785871157	0.0140868363075159	1.02971785871157	622.814062780722	0	8.520275411547						201	13	4	NaN	NaN	NaN	0.069788	1	32465	12.376	12.376	1	38591			15858	443	13337	13726	15858	15858		
PLPVNPTDPAVTGPDIFAK	19	Unmodified	_PLPVNPTDPAVTGPDIFAK_			0	0	0	Q9H3S7	Q9H3S7	Q9H3S7	PTPN23	Tyrosine-protein phosphatase non-receptor type 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.022566	1948.03058	1.5868	0.0015471	0.76863	0.00074943	2.3554	0.0022966	975.524904345705	15.03	0.12414	15.03	14.976	15.101	0	171	43	1.20972836110953	0.0278325512098285	1.20972836110953	487.961403826013	0	11.2266614531142						460	15	4	NaN	NaN	NaN	6.6848E-05	1	30684	42.495	39.601	1	116280			15859	2885	13338	13727	15859	15859		
PLQEDILMQNIETVHPFR	18	Unmodified	_PLQEDILMQNIETVHPFR_			0	0	0	Q92576	Q92576	Q92576	PHF3	PHD finger protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.377134	2179.10957	0.029535	2.1483E-05	-0.4034	-0.00029342	-0.37386	-0.00027194	727.711439448877	15.952	0.070939	15.952	15.925	15.996	0	531	25	0.969216233931596	0.0161650151283204	0.969216233931596	585.979237992011	0	9.77321975778125						138	9	4	NaN	NaN	NaN	0.026439	1	34442	29.115	26.399	1	28423			15860	2413	13339	13728	15860	15860		
PLQIENIIDQEVQTLSGGELQR	22	Unmodified	_PLQIENIIDQEVQTLSGGELQR_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.437887	2479.29183	1.033	0.00085476	-0.56052	-0.00046379	0.4725	0.00039097	827.771523905793	20.057	0.03547	20.057	20.049	20.084	0	390	28	1.06389100039157	0.0180692111077525	1.06389100039157	642.725594868184	0	10.916103673924						59	5	4	NaN	NaN	NaN	0.04134	1	36729	14.191	13.592	1	21744			15861	1335	13340	13729	15861	15861		
PLQIWDK	7	Unmodified	_PLQIWDK_			0	0	0	Q9Y6A4	Q9Y6A4	Q9Y6A4	CFAP20	Cilia- and flagella-associated protein 20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.252903	898.491253	-1.5151	-0.00068217	-2.2219	-0.0010004	-3.737	-0.0016826	450.251964769389	8.9819	0.18624	8.9819	8.9287	9.1149	0	783	31	0.798467866007927	0.0204516951022167	0.798467866007927	324.720732938388	0	8.31729078419585						280	22	3	NaN	NaN	NaN	0.030027	1	2297	60.709	41.221	1	75945			15862	3456	13341	13730	15862	15862		
PLRLPLQDVYK	11	Unmodified	_PLRLPLQDVYK_			0	0	1	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.934484	1340.78162	-1.2692	-0.0005685	-1.1831	-0.00052997	-2.4523	-0.0010985	447.933958280283	11.438	0.33714	11.438	11.243	11.58	0	780	31	0.800512323802183	0.0204460030373547	0.800512323802183	485.892114830653	0	12.4102419916137						731	39	4	NaN	NaN	NaN	0.050209	1	13645	20.183	19.733	1	319490			15863	1446	13342	13731	15863	15863		
PLSDFILALK	10	Unmodified	_PLSDFILALK_			0	0	0	Q9Y276	Q9Y276	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.8368	1115.65905	-0.30842	-0.00017236	-1.4133	-0.00078981	-1.7217	-0.00096217	558.835852641606	17.761	0.097518	17.761	17.725	17.823	0	666	31	0.877991458330206	0.0203326589411038	0.877991458330206	356.013255707977	0	8.24460880358572						167	12	2	NaN	NaN	NaN	0.066354	1	7159	33.426	30.571	1	76998			15864	3333	13343	13732	15864	15864		
PLSDISSQTQSIYIPR	16	Unmodified	_PLSDISSQTQSIYIPR_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.975615	1803.93668	1.6137	0.0014571	0.39648	0.00035801	2.0102	0.0018151	902.976277117905	12.369	0.11527	12.369	12.325	12.44	0	276	37	1.13998907770044	0.0239681717267723	1.13998907770044	460.090781798466	0	9.67336888024846						213	14	3	NaN	NaN	NaN	0.00035789	1	27332	74.524	73.561	1	47624			15865	1006	13344	13733	15865	15865		
PLSENELLELFEK	13	Unmodified	_PLSENELLELFEK_			0	0	0	Q9NSV4	Q9NSV4	Q9NSV4	DIAPH3	Protein diaphanous homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.911421	1559.80829	1.1271	0.00088015	-0.30535	-0.00023845	0.82174	0.00064171	780.91158943919	18.452	0.1242	18.452	18.381	18.506	0	417	58	1.04580932352505	0.0381829759272949	1.04580932352505	422.5841424077	0	15.4287399948039						380	15	3	NaN	NaN	NaN	0.010348	1	20343	55.604	46.089	1	89796			15866	3039	13345	13734	15866	15866		
PLSIEEIEVAPPK	13	Unmodified	_PLSIEEIEVAPPK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.39795	1420.78135	1.6845	0.0011984	0.57485	0.00040895	2.2594	0.0016073	711.39839152219	13.096	0.23941	13.096	13.026	13.265	0	429	61	1.03776581230406	0.0402508992087349	1.03776581230406	419.694805479674	0	16.2783289962941						996	28	5	NaN	NaN	NaN	1.3911E-16	1	16122	172.1	138.67	1	477430			15867	658	13346	13735	15867	15867		
PLSIGGIIILK	11	Unmodified	_PLSIGGIIILK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.376092	1122.73763	-0.08203	-4.6132E-05	-0.98458	-0.0005537	-1.0666	-0.00059983	562.375546064981	18.364	0.11525	18.364	18.328	18.444	0	630	31	0.902373728295776	0.0203016545312636	0.902373728295776	365.871769301401	0	8.23140349744818						246	14	4	NaN	NaN	NaN	3.2828E-05	1	7349	115.86	83.909	1	94667			15868	2641	13347	13736	15868	15868		
PLSPLHSLTPYQVPFNAVALR	21	Unmodified	_PLSPLHSLTPYQVPFNAVALR_			0	0	0	Q5SY16	Q5SY16	Q5SY16	NOL9	Polynucleotide 5-hydroxyl-kinase NOL9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.098589	2319.27394	0.11249	8.7075E-05	-1.2705	-0.00098346	-1.158	-0.00089638	774.432057152994	16.307	0.088653	16.307	16.271	16.36	0	546	49	0.959108205975751	0.0323703311033066	0.959108205975751	579.646176123592	0	19.5633178060419						421	11	4	NaN	NaN	NaN	0.0011823	1	35811	40.83	39.308	1	98812			15869	1984	13348	13737	15869	15869		
PLSSLTPLIMAAK	13	Unmodified	_PLSSLTPLIMAAK_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.394156	1340.77376	0.90374	0.00060677	-0.65404	-0.00043912	0.2497	0.00016765	671.3939214624	15.322	0.13301	15.322	15.269	15.402	0	459	46	1.01763759082241	0.030219453730939	1.01763759082241	411.791199604879	0	12.2284251441721						501	16	4	NaN	NaN	NaN	0.0025938	1	13644	71.066	55.186	1	148480			15870	1638	13349	13738	15870	15870		
PLTQEEIAQR	10	Unmodified	_PLTQEEIAQR_			0	0	0	Q7Z2Z2	Q7Z2Z2	Q7Z2Z2	EFTUD1	Elongation factor Tu GTP-binding domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.817127	1183.6197	1.1429	0.00067753	-1.6711	-0.00099064	-0.52816	-0.00031311	592.817098332172	4.9287	0.079789	4.9287	4.9021	4.9819	0	621	31	0.908462957275599	0.020293211090572	0.908462957275599	368.110789899225	0	8.22284486595305						104	10	2	NaN	NaN	NaN	0.0050863	1	8976	78.816	54.695	1	21360			15871	2130	13350	13739	15871	15871		
PLTSFGSAPSSEGAK	15	Unmodified	_PLTSFGSAPSSEGAK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.356813	1434.69907	2.066	0.0014842	-3.3686	-0.0024198	-1.3025	-0.00093567	718.354093196593	6.658	0.20394	6.658	6.587	6.7909	0	474	58	1.00756305028564	0.0382885589296732	1.00756305028564	407.442063572011	0	15.4832687215773						391	24	2	NaN	NaN	NaN	0.067932	1	16528	25.588	2.6899	1	155890			15872	3422	13351	13740	15872	15872		
PLVDIETEALK	11	Unmodified	_PLVDIETEALK_			0	0	0	P11182	P11182	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.345186	1226.67582	0.63303	0.0003889	0.4396	0.00027006	1.0726	0.00065897	614.345233787169	12.139	0.11529	12.139	12.094	12.21	0	537	37	0.965173861991602	0.0242575920930522	0.965173861991602	390.931941126512	0	9.8252428266386						260	14	3	NaN	NaN	NaN	0.0001213	1	10203	111.61	89.22	1	68494			15873	645	13352	13741	15873	15873		
PLVIQAMPTLIELMK	15	Unmodified	_PLVIQAMPTLIELMK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.990637	1695.96672	1.1846	0.0010057	0.72881	0.00061875	1.9134	0.0016244	848.991909214288	20.04	0.079793	20.04	20.013	20.093	0	198	82	1.1918274123006	0.0537840649639687	1.1918274123006	481.245874018922	0	21.7173720664074						396	10	6	NaN	NaN	NaN	4.3328E-24	1	24391	199.51	174.82	1	290640			15874	1780	13353	13742	15874	15874		
PLVIQAMPTLIELMK	15	Oxidation (M)	_PLVIQAMPTLIELM(Oxidation (M))K_	PLVIQAMPTLIELM(1)K	PLVIQAM(-41)PTLIELM(41)K	0	1	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.661155	1711.96164	-0.99506	-0.00056883	0.96541	0.00055189	-0.029647	-1.6948E-05	571.661942456057	18.204	0.070925	18.204	18.178	18.248	0	645	28	0.892219381832517	0.0182803602689122	0.892219381832517	540.358039713603	0	11.0712004707627						122	9	3	NaN	NaN	NaN	0.0037173	1	24834	55.754	54.497	2	21455			15875	1780	13353	13743	15875	15875	565;566	
PLVIQAMPTLIELMK	15	Oxidation (M)	_PLVIQAM(Oxidation (M))PTLIELMK_	PLVIQAM(1)PTLIELMK	PLVIQAM(57)PTLIELM(-57)K	0	1	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.988094	1711.96164	1.2225	0.0010476	0.30978	0.00026548	1.5323	0.0013131	857.490077028801	17.982	0.13299	17.982	17.903	18.036	0	267	64	1.14597988355104	0.041912601110381	1.14597988355104	462.698138839019	0	16.9225331142663						456	16	3	NaN	NaN	NaN	1.4226E-05	1	24836	83.214	75.638	2	81809			15876	1780	13353	13743	15876	15876	565;566	
PLVLCGPPGSGK	12	Unmodified	_PLVLCGPPGSGK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.320991	1180.62743	1.4791	0.00087464	-1.2322	-0.00072863	0.24692	0.00014601	591.320279923265	7.8197	0.16852	7.8197	7.7664	7.935	0	612	46	0.914549654013882	0.0304292729379168	0.914549654013882	370.587949168104	0	12.3303549492873						533	20	4	NaN	NaN	NaN	4.2021E-05	1	8900	104.39	92.437	1	182110			15877	1737	13354	13744	15877	15877		
PLWIEEPTSPDDILGHATISK	21	Unmodified	_PLWIEEPTSPDDILGHATISK_			0	0	0	Q7L5Y1	Q7L5Y1	Q7L5Y1	ENOSF1	Mitochondrial enolase superfamily member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.733752	2318.17943	0.27341	0.00021155	-0.81824	-0.0006331	-0.54482	-0.00042155	774.067677224263	15.881	0.10642	15.881	15.819	15.925	0	498	25	0.991429299781895	0.016144906020601	0.991429299781895	599.181419023175	0	9.75735506459978						134	13	2	NaN	NaN	NaN	1.0309E-07	1	35795	65.421	62.675	1	42232			15878	2121	13355	13745	15878	15878		
PLYFADR	7	Unmodified	_PLYFADR_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.229428	880.444303	-1.5947	-0.00070363	1.3983	0.00061695	-0.19645	-8.6678E-05	441.229984119813	7.5979	0.60309	7.5979	7.4472	8.0502	0	777	73	0.802556497112065	0.0490636072165918	0.802556497112065	326.484152132925	0	19.9593302905566						1380	69	3	NaN	NaN	NaN	0.0030127	1	2010	88.35	60.645	1	1672700			15879	558	13356	13746	15879	15879		
PLYLIFR	7	Unmodified	_PLYLIFR_			0	0	0	Q68E01	Q68E01	Q68E01	INTS3	Integrator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.281463	920.548374	-2.3038	-0.0010627	0.04334	1.9992E-05	-2.2605	-0.0010427	461.28135738976	14.834	0.10637	14.834	14.79	14.897	0	732	46	0.833184998970724	0.0305816988053002	0.833184998970724	338.717249393619	0	12.4324716766526						209	13	3	NaN	NaN	NaN	0.0033277	1	2718	112.95	76.381	1	42288			15880	2024	13357	13747	15880	15880		
PLYSVTVK	8	Unmodified	_PLYSVTVK_			0	0	0	P54578	P54578	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.768386	905.522219	-0.74204	-0.00033671	-0.067837	-3.0782E-05	-0.80988	-0.0003675	453.768397484661	6.9771	0.16855	6.9771	6.9328	7.1014	0	762	37	0.812773098473386	0.0245147306165753	0.812773098473386	330.499739308226	0	9.96847963251679						288	20	3	NaN	NaN	NaN	0.0046976	1	2432	82.716	65.022	1	128330			15881	1252	13358	13748	15881	15881		
PLYVALAQR	9	Unmodified	_PLYVALAQR_			0	0	0	P11940;Q9H361;Q4VXU2;Q13310	P11940;Q13310	P11940	PABPC1;PABPC3;PABPC1L;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.805834	1029.59712	0.48936	0.00025241	-0.083454	-4.3046E-05	0.4059	0.00020937	515.805841095255	9.2213	0.19513	9.2213	9.1415	9.3366	0	660	46	0.882057989648486	0.0304799546936941	0.882057989648486	358.026771263729	0	12.3717940263734						328	23	3	NaN	NaN	NaN	0.0076907	1	4991	63.301	47.72	1	150640			15882	661;1653	13359	13749	15882	15882		
PMCIPPSYADLGK	13	Unmodified	_PMCIPPSYADLGK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.849255	1447.68396	1.8428	0.0013357	3.1402	0.0022761	4.9829	0.0036119	724.850688119244	11.075	0.30148	11.075	10.897	11.199	0	471	64	1.00957851518677	0.0423130912523418	1.00957851518677	408.222089709357	0	17.1092572526646						719	35	4	NaN	NaN	NaN	0.033207	1	16911	46.033	38.032	1	215140			15883	1070	13360	13750	15883	15883		
PMCVESFSDYPPLGR	15	Unmodified	_PMCVESFSDYPPLGR_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.897465	1753.78038	3.5119	0.0030831	0.079676	6.9947E-05	3.5915	0.003153	877.898143136026	13.567	0.65619	13.567	13.274	13.93	0	333	136	1.10198982404297	0.0900107984295353	1.10198982404297	444.851599622887	0	36.3355874900989						6322	75	6	NaN	NaN	NaN	3.4775E-08	1	25995	136.94	130.91	1	9333600			15884	1446	13361	13751	15884	15884		
PMEAASAILSQADAR	15	Unmodified	_PMEAASAILSQADAR_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.882672	1529.75079	2.2441	0.0017187	-0.38064	-0.00029153	1.8634	0.0014272	765.882542478775	11.376	0.10647	11.376	11.332	11.438	0	282	52	1.13599383354359	0.0339806182631683	1.13599383354359	459.1046892817	0	13.7330509450457						306	13	4	NaN	NaN	NaN	2.2668E-12	1	19425	166.65	158.65	1	68450			15885	2769	13362	13752	15885	15885		
PMEGNFEEIAR	11	Unmodified	_PMEGNFEEIAR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.80062	1291.58669	1.6336	0.0010566	1.1397	0.00073716	2.7733	0.0017938	646.801324784611	8.8487	0.16862	8.8487	8.7866	8.9553	0	510	40	0.983355730988811	0.026248176167575	0.983355730988811	398.073466650981	0	10.6255571112455						484	20	4	NaN	NaN	NaN	0.025609	1	12115	58.889	44.895	1	278430			15886	1884	13363	13753	15886	15886		
PMEISGTHTEINLDNAIDMIR	21	Unmodified	_PMEISGTHTEINLDNAIDMIR_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.71912	2369.13553	0.56131	0.00044384	-3.3052	-0.0026135	-2.7438	-0.0021696	791.049843659901	16.067	0.13303	16.067	16.041	16.174	0	579	43	0.936845902828289	0.0283672188304905	0.936845902828289	566.120818822621	0	17.1418512943864						334	16	4	NaN	NaN	NaN	9.1636E-08	1	36207	72.311	70.687	1	67860			15887	1664	13364	13754	15887	15887		
PMELIIGK	8	Unmodified	_PMELIIGK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.764789	899.515025	-0.80267	-0.00036181	-2.5134	-0.0011329	-3.316	-0.0014947	450.763972021863	10.179	0.13299	10.179	10.117	10.25	0	759	34	0.814815566123307	0.0224671474092853	0.814815566123307	331.363336862566	0	9.13677799596354						234	16	3	NaN	NaN	NaN	0.012201	1	2318	49.325	36.498	1	52134			15888	57	13365	13755	15888	15888		
PMFIVNTNVPR	11	Unmodified	_PMFIVNTNVPR_			0	0	0	P14174	P14174	P14174	MIF	Macrophage migration inhibitory factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.34754	1286.68053	1.6493	0.0010628	1.5106	0.00097337	3.16	0.0020361	644.348996568683	11.58	0.31929	11.58	11.483	11.802	0	465	97	1.01360860968299	0.0645439967199662	1.01360860968299	410.336726057727	0	26.1291903479735						1997	37	4	NaN	NaN	NaN	8.9479E-09	1	11969	146.03	127.69	1	1985400			15889	692	13366	13756	15889	15889		
PMIHELLTEGR	11	Unmodified	_PMIHELLTEGR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	432.564062	1294.67036	-1.7096	-0.00073952	-0.17466	-7.555E-05	-1.8843	-0.00081507	432.56412643346	8.7599	0.29281	8.7599	8.6891	8.9819	0	807	40	0.782101955086014	0.0266112761847965	0.782101955086014	474.889649376771	0	16.1582764685413						831	34	5	NaN	NaN	NaN	0.00046013	1	12211	92.732	78.737	1	606900			15890	1780	13367	13757	15890	15890		
PMIHELLTEGR	11	Oxidation (M)	_PM(Oxidation (M))IHELLTEGR_	PM(1)IHELLTEGR	PM(63)IHELLTEGR	0	1	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.8957	1310.66527	-2.2558	-0.00098779	0.99565	0.00043599	-1.2601	-0.0005518	437.896227695681	7.0037	0.16855	7.0037	6.9151	7.0836	0	825	37	0.769815552739974	0.0245796540978664	0.769815552739974	467.36924754539	0	14.9227622120101						351	20	3	NaN	NaN	NaN	0.0057922	1	12680	63.397	61.598	1	94551			15891	1780	13367	13758	15891	15891	567	
PMINLYTDK	9	Unmodified	_PMINLYTDK_			0	0	0	Q92804	Q92804	Q92804	TAF15	TATA-binding protein-associated factor 2N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.781167	1093.54778	0.63074	0.00034551	1.5445	0.00084604	2.1752	0.0011916	547.782269730391	9.3721	0.34585	9.3721	9.2479	9.5938	0	597	55	0.924688525662974	0.0365024805192742	0.924688525662974	375.04075441628	0	14.8048964079001						798	40	5	NaN	NaN	NaN	1.1063E-12	1	6545	217.66	157.07	1	501860			15892	2434	13368	13759	15892	15892		
PMINLYTDK	9	Oxidation (M)	_PM(Oxidation (M))INLYTDK_	PM(1)INLYTDK	PM(72)INLYTDK	0	1	0	Q92804	Q92804	Q92804	TAF15	TATA-binding protein-associated factor 2N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.778625	1109.5427	0.90815	0.00050473	-1.3019	-0.00072359	-0.3938	-0.00021887	555.778378353719	7.2077	0.24828	7.2077	7.1368	7.3851	0	621	25	0.908462957275599	0.0162323175227004	0.908462957275599	368.393801709748	0	6.58242046619108						310	29	3	NaN	NaN	NaN	0.0042554	1	6973	72.038	65.348	1	104480			15893	2434	13368	13760	15893	15893	600	
PMNIQLVTSQIDAQR	15	Unmodified	_PMNIQLVTSQIDAQR_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.451253	1712.88795	2.1392	0.0018342	-0.26355	-0.00022598	1.8756	0.0016083	857.451688289491	13.434	0.097563	13.434	13.371	13.469	0	330	49	1.10399226369747	0.0320280154713002	1.10399226369747	445.743382418254	0	12.9314999912297						330	12	5	NaN	NaN	NaN	0.00015383	1	24859	104.04	101.74	1	84807			15894	2172	13369	13761	15894	15894		
PMQFLGDEETVR	12	Oxidation (M)	_PM(Oxidation (M))QFLGDEETVR_	PM(1)QFLGDEETVR	PM(47)QFLGDEETVR	0	1	0	P18669;P15259	P18669	P18669	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.337566	1436.66058	3.203	0.0023041	-0.42174	-0.00030337	2.7813	0.0020007	719.838231947062	7.7309	0.4702	7.7309	7.6688	8.139	-8.8818E-16	429	100	1.03776581230406	0.0664369691708006	1.03776581230406	419.650084636366	0	26.8656756707083						1302	54	5	NaN	NaN	NaN	0.0018565	1	16577	47.361	37.273	1	386900			15895	757	13370	13762	15895	15895	255	
PMQFLGDEETVRK	13	Unmodified	_PMQFLGDEETVRK_			0	0	1	P18669;P15259	P18669	P18669	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.260819	1548.76063	0.95368	0.0004933	-1.3532	-0.00069994	-0.39949	-0.00020664	517.260178705157	7.7221	0.33704	7.7221	7.66	7.997	0	765	46	0.810730346695089	0.0306412849753211	0.810730346695089	491.420347055735	0	18.5730692802957						1099	39	6	NaN	NaN	NaN	1.1603E-16	1	20001	248.69	218.35	1	1143900			15896	757	13371	13763	15896	15896		
PMQFLGDEETVRK	13	Unmodified	_PMQFLGDEETVRK_			0	0	1	P18669;P15259	P18669	P18669	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.38759	1548.76063	3.6381	0.0028209	-2.4824	-0.0019248	1.1557	0.00089613	775.385758897031	7.7132	0.20404	7.7132	7.6688	7.8729	0	366	46	1.07994477139643	0.0300904538229143	1.07994477139643	436.404778390844	0	12.1595272092378						596	24	5	NaN	NaN	NaN	8.5392E-11	1	20002	180.81	150.46	1	296800			15897	757	13371	13763	15897	15897		
PMQFLGDEETVRK	13	Oxidation (M)	_PM(Oxidation (M))QFLGDEETVRK_	PM(1)QFLGDEETVRK	PM(74)QFLGDEETVRK	0	1	1	P18669;P15259	P18669	P18669	PGAM1;PGAM2	Phosphoglycerate mutase 1;Phosphoglycerate mutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.592457	1564.75554	0.24496	0.00012802	-0.10719	-5.6014E-05	0.13778	7.2001E-05	522.592659805378	5.6381	0.15967	5.6381	5.5849	5.7445	0	759	31	0.814815566123307	0.0204232585244036	0.814815566123307	493.851900521953	0	12.3783411319876						353	19	4	NaN	NaN	NaN	0.0003727	1	20488	73.655	66.098	1	117670			15898	757	13371	13764	15898	15898	255	
PMQPGPHVVK	10	Unmodified	_PMQPGPHVVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	363.867305	1088.58008	0.024823	9.0322E-06	0.81376	0.0002961	0.83858	0.00030513	363.867664886758	3.0932	0.18622	3.0932	3.0488	3.2351	0	864	28	0.743159753061487	0.0184720295659375	0.743159753061487	452.143280848923	0	11.2385042616675						250	22	3	NaN	NaN	NaN	0.062437	1	6437	16.457	7.0643	1	61166			15899	326	13372	13765	15899	15899		
PMVNLDK	7	Unmodified	_PMVNLDK_			0	0	0	P82979	P82979	P82979	SARNP	SAP domain-containing ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.717839	815.421125	-1.0393	-0.00042477	0.53914	0.00022035	-0.50013	-0.00020441	408.717699825258	5.177	0.35472	5.177	5.1149	5.4697	0	834	64	0.763668499782291	0.0430713875788695	0.763668499782291	311.044251974623	0	17.5430930237372						632	41	3	NaN	NaN	NaN	0.035784	1	1160	49.325	17.198	1	182490			15900	1480	13373	13766	15900	15900		
PNAGEESVMNLDK	13	Unmodified	_PNAGEESVMNLDK_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.327199	1402.63984	1.7823	0.0012518	0.35666	0.00025049	2.139	0.0015023	702.327803311635	7.456	0.24827	7.456	7.4028	7.6511	0	531	40	0.969216233931596	0.0262663358758335	0.969216233931596	392.020754705271	0	10.6239954025709						606	29	5	NaN	NaN	NaN	4.7329E-06	1	15527	142.51	136.25	1	290750			15901	919	13374	13767	15901	15901		
PNEGAIVEVALEGYYK	16	Unmodified	_PNEGAIVEVALEGYYK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.633199	1750.87777	0.218	0.00012745	0.028307	1.6549E-05	0.24631	0.000144	584.633134497927	15.81	0.15963	15.81	15.766	15.925	-1.7764E-15	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	559.922584679118	0	11.0477618241715						290	19	4	NaN	NaN	NaN	0.011243	1	25919	61.042	55.654	1	59253			15902	1530	13375	13768	15902	15902		
PNEGAIVEVALEGYYK	16	Unmodified	_PNEGAIVEVALEGYYK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.44616	1750.87777	2.1429	0.0018782	-0.75965	-0.00066579	1.3833	0.0012124	876.445224555707	15.81	0.31925	15.81	15.721	16.041	0	261	79	1.14997238118939	0.0519453606978588	1.14997238118939	464.227252403225	0	20.9695923713581						1379	37	4	NaN	NaN	NaN	1.5625E-08	1	25920	146.48	123.52	1	460010			15903	1530	13375	13768	15903	15903		
PNFAAAWEEVGDTFEK	16	Unmodified	_PNFAAAWEEVGDTFEK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.917766	1809.82098	1.2941	0.0011723	-0.95092	-0.00086145	0.34316	0.00031087	905.918770242547	17.477	0.18621	17.477	17.406	17.592	0	300	49	1.12400150285141	0.0319971654265232	1.12400150285141	453.627072634494	0	12.9134885035417						518	22	4	NaN	NaN	NaN	0.00017927	1	27468	73.305	72.629	1	131060			15904	3173	13376	13769	15904	15904		
PNFGHLTDPFDTPAFNK	17	Unmodified	_PNFGHLTDPFDTPAFNK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.975847	1916.90571	0.339	0.00021695	-1.2537	-0.00080235	-0.91472	-0.0005854	640.309319630337	13.912	0.12414	13.912	13.859	13.983	0	684	43	0.86578508874114	0.0284973564255872	0.86578508874114	523.898569203108	0	17.2441457488533						442	15	5	NaN	NaN	NaN	2.805E-10	1	29987	105.78	96.973	1	168520			15905	240	13377	13770	15905	15905		
PNFSGNWK	8	Unmodified	_PNFSGNWK_			0	0	0	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.229959	948.445365	-0.8888	-0.00042239	0.84398	0.00040108	-0.044828	-2.1304E-05	475.230372315483	6.1436	0.20394	6.1436	6.055	6.2589	0	786	49	0.796423123669906	0.0327045075316305	0.796423123669906	323.632270531356	0	13.2897121071767						330	24	3	NaN	NaN	NaN	0.00059109	1	3210	93.561	76.165	1	154210			15906	887	13378	13771	15906	15906		
PNFYNNDFDDDFSHR	15	Unmodified	_PNFYNNDFDDDFSHR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.927445	1901.7605	0.20442	0.00012979	-0.3839	-0.00024375	-0.17948	-0.00011396	635.261242559296	10.551	0.088675	10.551	10.516	10.605	0	678	25	0.869855008346864	0.0162774195650359	0.869855008346864	526.391423464926	0	9.85025547126406						176	11	4	NaN	NaN	NaN	2.1964E-06	1	29629	87.573	85.271	1	47969			15907	1974	13379	13772	15907	15907		
PNGEKPDEFESGISQALLELEMNSDLK	27	Unmodified	_PNGEKPDEFESGISQALLELEMNSDLK_			0	0	1	P62081	P62081	P62081	RPS7	40S ribosomal protein S7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	997.481492	2989.42265	1.0354	0.0010328	1.2874	0.0012842	2.3229	0.002317	997.817246273748	19.561	0.070939	19.561	19.534	19.605	0	390	64	1.06389100039157	0.0421498843295585	1.06389100039157	642.113952709091	0	25.4396632955089						284	9	4	NaN	NaN	NaN	5.7579E-06	1	38207	43.09	41.355	1	52304			15908	1364	13380	13773	15908	15908		
PNHTIYINNLNEK	13	Unmodified	_PNHTIYINNLNEK_			0	0	0	P09012	P09012	P09012	SNRPA	U1 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.404629	1568.79471	2.3641	0.0018568	-3.4271	-0.0026916	-1.063	-0.00083486	785.401647427587	5.9485	0.10645	5.9485	5.9041	6.0106	0	402	28	1.05585747106793	0.0180816768665149	1.05585747106793	426.622842975065	0	7.30596373272493						177	13	3	NaN	NaN	NaN	0.00033258	1	20631	70.806	64.059	1	38813			15909	595	13381	13774	15909	15909		
PNIEGAPGAPIGNTFQHVQSLPTK	24	Unmodified	_PNIEGAPGAPIGNTFQHVQSLPTK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.099317	2472.27612	1.4766	0.0012184	-0.035568	-2.9347E-05	1.4411	0.001189	825.43354577955	11.456	0.15077	11.456	11.394	11.545	0	519	58	0.97729762293174	0.0383839585153254	0.97729762293174	590.421506909932	0	23.189163767535						779	18	5	NaN	NaN	NaN	0.00046147	1	36691	43.727	38.634	1	206760			15910	400	13382	13775	15910	15910		
PNIPEAIR	8	Unmodified	_PNIPEAIR_			0	0	0	O94905	O94905	O94905	ERLIN2	Erlin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.261259	908.507966	-0.9147	-0.00041643	0.011585	5.2744E-06	-0.90312	-0.00041115	455.261357774597	6.5427	0.1064	6.5427	6.5072	6.6136	0	756	64	0.816857749704129	0.0428918434694022	0.816857749704129	332.144382165296	0	17.440349747842						354	13	3	NaN	NaN	NaN	0.0046976	1	2483	72.492	53.537	1	96573			15911	395	13383	13776	15911	15911		
PNIVLFSGSSHQDLSQR	17	Unmodified	_PNIVLFSGSSHQDLSQR_			0	0	0	P11908	P11908	P11908	PRPS2	Ribose-phosphate pyrophosphokinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.990268	1883.94897	1.0431	0.00065613	0.051044	3.2106E-05	1.0942	0.00068823	629.324652590644	9.8243	0.10638	9.8243	9.78	9.8864	0	675	49	0.871889544407995	0.0325458093400007	0.871889544407995	527.658708806681	0	19.6963937044037						384	13	4	NaN	NaN	NaN	6.1774E-07	1	29242	70.598	66.862	1	118720			15912	660	13384	13777	15912	15912		
PNLADLAVYGVLR	13	Unmodified	_PNLADLAVYGVLR_			0	0	0	Q9H7Z7	Q9H7Z7	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.898451	1399.78235	-0.08543	-5.9878E-05	0.33736	0.00023646	0.25193	0.00017658	700.898602235735	17.246	0.097544	17.246	17.202	17.3	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.277099452002	0	8.97356708502576						255	12	3	NaN	NaN	NaN	2.38E-05	1	15452	99.276	86.68	1	68838			15913	2919	13385	13778	15913	15913		
PNLDLLEQQHQLIQEALIFDNK	22	Unmodified	_PNLDLLEQQHQLIQEALIFDNK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	873.797415	2618.37042	1.1261	0.00098402	-0.68674	-0.00060007	0.4394	0.00038395	874.131067834893	18.577	0.15959	18.577	18.541	18.701	0	480	73	1.00353128488872	0.0483945919440341	1.00353128488872	606.0811462676	0	29.2278379361591						754	19	6	NaN	NaN	NaN	5.7483E-38	1	37308	202.16	189.98	1	354440			15914	221	13386	13779	15914	15914		
PNLMQTLEGTPVFVHAGPFANIAHGNSSIIADR	33	Unmodified	_PNLMQTLEGTPVFVHAGPFANIAHGNSSIIADR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	869.445128	3473.75141	1.4773	0.0012845	0.62668	0.00054487	2.104	0.0018293	869.947457297813	18.302	0.14187	18.302	18.222	18.364	0	312	37	1.11600111266355	0.0240110882362814	1.11600111266355	897.505467229139	0	19.3100909323922						594	17	5	NaN	NaN	NaN	0.00023045	1	38643	21.249	21.143	1	118470			15915	656	13387	13780	15915	15915		
PNLNLQVLSNPEFLAEGTAIK	21	Unmodified	_PNLNLQVLSNPEFLAEGTAIK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.745992	2267.21615	0.50219	0.00038003	-0.96446	-0.00072985	-0.46227	-0.00034982	757.079753269254	18.426	0.070937	18.426	18.39	18.461	0	483	22	1.00151498427745	0.0141141050876044	1.00151498427745	605.357823480426	0	8.53115936390134						122	9	4	NaN	NaN	NaN	0.00018118	1	35347	90.376	89.281	1	20706			15916	275	13388	13781	15916	15916		
PNMVTPGHACTQK	13	Unmodified	_PNMVTPGHACTQK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.895594	1439.66495	0.41663	0.00020035	-0.035971	-1.7298E-05	0.38065	0.00018305	481.23001970728	2.7917	0.23057	2.7917	2.7119	2.9424	0	762	49	0.812773098473386	0.032695407825409	0.812773098473386	492.988740861956	0	19.8314486122775						629	27	4	NaN	NaN	NaN	0.046297	1	16658	40.861	40.57	1	183100			15917	504	13389	13782	15917	15917		
PNMVTPGHACTQK	13	Unmodified	_PNMVTPGHACTQK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.839753	1439.66495	2.5435	0.0018334	-1.7803	-0.0012833	0.76314	0.0005501	720.838936639138	2.7917	0.11527	2.7917	2.7562	2.8715	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	398.456261309773	0	8.97982138636831						213	14	3	NaN	NaN	NaN	0.0038147	1	16659	39.702	24.94	1	36481			15918	504	13389	13782	15918	15918		
PNNLSLVVHGPGDLR	15	Unmodified	_PNNLSLVVHGPGDLR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.958239	1586.85289	0.42991	0.00022784	0.57545	0.00030496	1.0054	0.0005328	530.292490995606	10.037	0.328	10.037	9.8776	10.206	0	687	103	0.863749705078866	0.0691407234567107	0.863749705078866	523.446540939842	0	41.9004166585376						1067	38	4	NaN	NaN	NaN	9.2281E-05	1	21181	115.05	103.03	1	388940			15919	1508	13390	13783	15919	15919		
PNNLSLVVHGPGDLR	15	Unmodified	_PNNLSLVVHGPGDLR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.433721	1586.85289	2.6125	0.0020755	0.071704	5.6964E-05	2.6842	0.0021324	794.431979832055	10.028	0.25712	10.028	9.9307	10.188	0	342	49	1.09598084995137	0.0320589101536728	1.09598084995137	442.790724062664	0	12.952222696441						526	30	3	NaN	NaN	NaN	5.849E-07	1	21182	108.91	99.399	1	127450			15920	1508	13390	13783	15920	15920		
PNPNQIISVGSK	12	Unmodified	_PNPNQIISVGSK_			0	0	0	O94776	O94776	O94776	MTA2	Metastasis-associated protein MTA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.346052	1252.67755	1.1025	0.00069167	-0.19471	-0.00012215	0.90782	0.00056952	627.345932911319	7.5358	0.20394	7.5358	7.4472	7.6511	0	579	37	0.936845902828289	0.024301288635538	0.936845902828289	379.370392199759	0	9.84066789724051						362	24	3	NaN	NaN	NaN	0.00017661	1	10997	103.69	82.411	1	95652			15921	385	13391	13784	15921	15921		
PNTLTLVHVR	10	Unmodified	_PNTLTLVHVR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	383.89614	1148.66659	-1.4715	-0.00056491	-0.41711	-0.00016013	-1.8886	-0.00072503	383.896169642559	7.1811	0.15072	7.1811	7.1368	7.2875	0	852	25	0.751366682244005	0.0164092837353766	0.751366682244005	456.837970263918	0	9.97699798554515						208	18	3	NaN	NaN	NaN	0.0054627	1	8042	48.157	41.007	1	68089			15922	352	13392	13785	15922	15922		
PNWDYHAEIQAFGHR	15	Unmodified	_PNWDYHAEIQAFGHR_			0	0	0	Q9H9J2	Q9H9J2	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	460.968305	1839.84412	-1.6958	-0.00078169	0.3036	0.00013995	-1.3922	-0.00064174	461.219183712438	10.64	0.0798	10.64	10.605	10.684	0	822	19	0.771863999559055	0.0122898254393368	0.771863999559055	622.938820120823	0	9.91859882446238						154	10	4	NaN	NaN	NaN	0.067555	1	28215	14.363	13.481	1	30927			15923	2937	13393	13786	15923	15923		
PNYDMTLTNACIALSQR	17	Unmodified	_PNYDMTLTNACIALSQR_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.469317	1966.92408	1.4043	0.0013825	-2.8755	-0.0028309	-1.4713	-0.0014484	984.967712134876	13.691	0.14187	13.691	13.602	13.744	0	228	46	1.17191150690002	0.0298923356935374	1.17191150690002	472.675321044492	0	12.0566862664298						329	17	4	NaN	NaN	NaN	0.00027899	1	31042	56.08	43.398	1	64036			15924	614	13394	13787	15924	15924		
PNYGCQVTIQSEQEK	15	Unmodified	_PNYGCQVTIQSEQEK_			0	0	0	Q8N3C0	Q8N3C0	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.912158	1779.80976	3.3208	0.0029585	-1.9593	-0.0017455	1.3615	0.001213	890.909960512868	5.9751	0.070992	5.9751	5.9396	6.0106	0	339	28	1.09798411722691	0.0180294071906015	1.09798411722691	443.18373698467	0	7.27728200160993						121	9	3	NaN	NaN	NaN	9.9885E-05	1	26664	66.619	65.031	1	22802			15925	2245	13395	13788	15925	15925		
PNYIVPDYMPVVYDK	15	Unmodified	_PNYIVPDYMPVVYDK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.947481	1811.88041	1.5882	0.0014404	2.8507	0.0025854	4.4389	0.0040258	907.453377152071	15.304	0.20391	15.304	15.198	15.402	0	267	85	1.14597988355104	0.0558566067703796	1.14597988355104	462.49314632928	0	22.5425403877604						910	24	5	NaN	NaN	NaN	0.0046646	1	27525	54.309	45.934	1	344360			15926	1737	13396	13789	15926	15926		
PNYSLNLWSIMK	12	Unmodified	_PNYSLNLWSIMK_			0	0	0	P22059;Q969R2	P22059	P22059	OSBP;OSBP2	Oxysterol-binding protein 1;Oxysterol-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.379037	1464.74352	0.84505	0.00061975	1.3761	0.0010092	2.2212	0.001629	733.380337723931	17.77	0.133	17.77	17.681	17.814	0	465	55	1.01360860968299	0.0362558355413685	1.01360860968299	409.806475177082	0	14.6583957810452						400	16	3	NaN	NaN	NaN	0.00063205	1	17416	83.775	74.513	1	92288			15927	798	13397	13790	15927	15927		
PPSATSIPAILK	12	Unmodified	_PPSATSIPAILK_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.858264	1193.70197	0.30419	0.00018186	2.0371	0.0012179	2.3413	0.0013998	597.859276863599	11.669	0.22177	11.669	11.536	11.758	0	513	37	0.981336640919867	0.0242240595168645	0.981336640919867	397.600620299881	0	9.81467591086613						345	26	3	NaN	NaN	NaN	0.0029062	1	9274	66.664	59.514	1	81348			15928	3288	13398	13791	15928	15928		
PPWHLGVDSLFR	12	Unmodified	_PPWHLGVDSLFR_			0	0	0	Q6BDS2	Q6BDS2	Q6BDS2	UHRF1BP1	UHRF1-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.254216	1422.74082	-2.5409	-0.0012076	-0.023019	-1.094E-05	-2.564	-0.0012185	475.588541688439	15.047	0.062074	15.047	15.012	15.074	0	804	19	0.78414869089473	0.0122795604485167	0.78414869089473	475.680330078808	0	7.44902776118676						90	8	3	NaN	NaN	NaN	0.0017408	1	16177	81.099	67.825	1	16275			15929	2028	13399	13792	15929	15929		
PQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQK	40	Unmodified	_PQAGLIVPQAVPSSQPSVVGAGEPMDLGELVGMTPEIIQK_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1347.37427	4039.10099	1.2104	0.0016309	-1.0607	-0.0014292	0.1497	0.0002017	1348.04158186656	19.969	0.026603	19.969	19.96	19.986	0	123	61	1.24149774378079	0.039684517663034	1.24149774378079	748.406048866464	0	23.9228248413206						142	4	4	NaN	NaN	NaN	0.0036173	1	38768	7.4693	7.275	1	25019			15930	3288	13400	13793	15930	15930		
PQANVPSALPSLPAGSGLK	19	Unmodified	_PQANVPSALPSLPAGSGLK_			0	0	0	Q9UEE9	Q9UEE9	Q9UEE9	CFDP1	Craniofacial development protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.5018	1802.98905	1.5919	0.0014367	0.91267	0.00082368	2.5046	0.0022604	903.004192046615	12.591	0.133	12.591	12.529	12.662	0	246	58	1.1599488233373	0.0379157076818644	1.1599488233373	468.148256134885	0	15.3025479006183						499	16	3	NaN	NaN	NaN	0.0020762	1	27306	62.711	57.617	1	147900			15931	3198	13401	13794	15931	15931		
PQAPATVGLAFR	12	Unmodified	_PQAPATVGLAFR_			0	0	0	Q15370	Q15370	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.345855	1226.67716	0.62965	0.00038682	1.0113	0.0006213	1.641	0.0010081	614.346517690845	10.241	0.09753	10.241	10.197	10.294	0	555	40	0.953040030838688	0.0262917911447993	0.953040030838688	386.01727316172	0	10.6491702298397						160	12	2	NaN	NaN	NaN	0.0014414	1	10205	50.297	35.762	1	46652			15932	1836	13402	13795	15932	15932		
PQDGDVIAPLITPQK	15	Unmodified	_PQDGDVIAPLITPQK_			0	0	0	Q9Y3Z3	Q9Y3Z3	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.438138	1590.86172	1.2884	0.0010261	0.11276	8.9809E-05	1.4012	0.001116	796.938984889964	12.378	0.09753	12.378	12.325	12.423	0	378	34	1.07192009927972	0.0220724150021865	1.07192009927972	433.060421337625	0	8.9173524661108						213	12	3	NaN	NaN	NaN	0.00056753	1	21305	74.733	71.854	1	44199			15933	3402	13403	13796	15933	15933		
PQDIDFATTATPTQMK	16	Unmodified	_PQDIDFATTATPTQMK_			0	0	0	Q96Q11	Q96Q11	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.927277	1763.84	2.7197	0.0024013	-0.14339	-0.0001266	2.5763	0.0022747	882.927352076312	10.126	0.088687	10.126	10.09	10.179	0	297	25	1.12600091227925	0.015996377322206	1.12600091227925	454.52407113285	0	6.45713379498852						179	11	4	NaN	NaN	NaN	1.8594E-08	1	26239	119.79	100.23	1	34600			15934	2602	13404	13797	15934	15934		
PQEAVQGDVGSFVLK	15	Unmodified	_PQEAVQGDVGSFVLK_			0	0	0	A1L0T0	A1L0T0	A1L0T0	ILVBL	Acetolactate synthase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.414662	1572.81477	1.9307	0.0015202	0.75265	0.00059264	2.6833	0.0021129	787.415104380909	11.465	0.21288	11.465	11.394	11.607	0	372	49	1.07593298845566	0.0320942731309124	1.07593298845566	434.724686725429	0	12.9675109716103						618	25	4	NaN	NaN	NaN	4.3445E-08	1	20761	107.6	102.77	1	208740			15935	6	13405	13798	15935	15935		
PQEAVYGQNDIHHK	14	Unmodified	_PQEAVYGQNDIHHK_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.933982	1634.78012	0.037804	2.0639E-05	2.0278	0.0011071	2.0656	0.0011277	545.935037006461	2.8183	0.053264	2.8183	2.8094	2.8627	0	747	19	0.822982596624503	0.0122471393511825	0.822982596624503	498.614627694286	0	7.42008743921969						81	7	3	NaN	NaN	NaN	0.058072	1	22612	13.218	13.218	1	14993			15936	3292	13406	13799	15936	15936		
PQEQLTLEPYER	12	Unmodified	_PQEQLTLEPYER_			0	0	0	P22087;A6NHQ2	P22087;A6NHQ2	P22087	FBL;FBLL1	rRNA 2-O-methyltransferase fibrillarin;rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.877913	1501.74127	1.4594	0.0010973	0.28015	0.00021064	1.7395	0.0013079	751.878328128617	9.2923	0.33699	9.2923	9.2125	9.5494	0	441	85	1.02971785871157	0.0563668491112521	1.02971785871157	416.223528421347	0	22.7841137497944						1424	39	5	NaN	NaN	NaN	2.012E-23	1	18571	223.96	204.64	1	742510			15937	800;15	13407	13800	15937	15937		
PQFLNSGAYPQK	12	Unmodified	_PQFLNSGAYPQK_			0	0	0	Q9H788	Q9H788	Q9H788	SH2D4A	SH2 domain-containing protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.346052	1348.67755	1.3299	0.00089812	-2.8425	-0.0019197	-1.5127	-0.0010216	675.344458549775	7.5092	0.13299	7.5092	7.4028	7.5358	0	501	16	0.98941132619024	0.0100884733743719	0.98941132619024	400.345395995513	0	4.08209787086724						91	16	2	NaN	NaN	NaN	0.046658	1	13855	47.334	41.468	1	35074			15938	2913	13408	13801	15938	15938		
PQGGQDILSMMGQLMK	16	Unmodified	_PQGGQDILSMMGQLMK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.422793	1732.83103	1.299	0.0011268	1.4015	0.0012157	2.7005	0.0023425	867.424048080865	19.41	0.035508	19.41	19.392	19.428	0	306	34	1.12000185836644	0.0220025900053455	1.12000185836644	452.165566541797	0	8.88285452460269						85	5	3	NaN	NaN	NaN	0.071179	1	25403	24.744	22.76	1	13172			15939	3331	13409	13802	15939	15939		
PQGIPVAALLEPDEVLK	17	Unmodified	_PQGIPVAALLEPDEVLK_			0	0	0	P57678	P57678	P57678	GEMIN4	Gem-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.008927	1788.0033	1.169	0.0010463	-0.23818	-0.00021317	0.93087	0.00083314	895.008619164572	18.16	0.17731	18.16	18.062	18.24	0	258	43	1.15196821829984	0.0279436470616286	1.15196821829984	464.957078220554	0	11.2786067238702						507	21	4	NaN	NaN	NaN	0.00046588	1	26930	58.338	54.602	1	141320			15940	1294	13410	13803	15940	15940		
PQGLDPVEILQER	13	Unmodified	_PQGLDPVEILQER_			0	0	0	P51531	P51531	P51531	SMARCA2	Probable global transcription activator SNF2L2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.401555	1492.78856	0.98641	0.00073724	2.4304	0.0018165	3.4168	0.0025537	747.40281586013	14.648	0.12416	14.648	14.586	14.71	0	402	61	1.05585747106793	0.0402064754479616	1.05585747106793	426.812818025661	0	16.2527988474308						330	15	3	NaN	NaN	NaN	0.0066389	1	18335	32.759	30.457	1	72345			15941	1186	13411	13804	15941	15941		
PQGPSADGDVGAELTRPLDK	20	Unmodified	_PQGPSADGDVGAELTRPLDK_			0	0	1	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.007876	2022.0018	0.77212	0.00052119	0.86486	0.00058379	1.637	0.001105	675.342982988679	9.3544	0.15965	9.3544	9.2745	9.4342	0	540	46	0.963152256458504	0.0303115059679868	0.963152256458504	582.599249353602	0	18.3350664500957						363	19	4	NaN	NaN	NaN	3.194E-07	1	32021	112.06	104.48	1	108820			15942	2223	13412	13805	15942	15942		
PQIAEIIR	8	Unmodified	_PQIAEIIR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.284734	938.554916	-0.61654	-0.00028995	-0.18093	-8.5091E-05	-0.79748	-0.00037504	470.28465375647	8.8665	0.15086	8.8665	8.8221	8.973	0	732	31	0.833184998970724	0.020400551942483	0.833184998970724	338.621688138601	0	8.29115904181748						248	18	3	NaN	NaN	NaN	0.0025198	1	3050	101.41	74.933	1	86920			15943	1842	13413	13806	15943	15943		
PQIIAHIQK	9	Unmodified	_PQIIAHIQK_			0	0	0	Q96MX6	Q96MX6	Q96MX6	WDR92	WD repeat-containing protein 92	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	349.881831	1046.62366	-0.8896	-0.00031126	0.077141	2.699E-05	-0.81246	-0.00028427	349.881879571513	4.4145	0.053172	4.4145	4.3968	4.4499	0	888	19	0.726732155490709	0.012325854453324	0.726732155490709	442.369672441906	0	7.50288005819948						51	7	2	NaN	NaN	NaN	0.064544	1	5400	23.575	17.827	1	9458.2			15944	2587	13414	13807	15944	15944		
PQLGMIDR	8	Unmodified	_PQLGMIDR_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.247295	928.480036	-0.41793	-0.00019444	1.5459	0.00071925	1.128	0.00052481	465.247546062033	6.9328	0.30157	6.9328	6.8441	7.1457	0	756	52	0.816857749704129	0.0347219621408564	0.816857749704129	332.037962709039	0	14.1138522278649						854	35	4	NaN	NaN	NaN	0.0023861	1	2847	98.009	74.434	1	492690			15945	611	13415	13808	15945	15945		
PQLKPPEDIVR	11	Unmodified	_PQLKPPEDIVR_			0	0	1	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	431.250472	1290.72959	-0.95911	-0.00041362	0.33134	0.00014289	-0.62777	-0.00027072	431.250567799886	7.3053	0.22167	7.3053	7.1457	7.3674	0	744	28	0.82502364452135	0.0183694328474171	0.82502364452135	500.967672248321	0	11.1542160945355						215	26	2	NaN	NaN	NaN	0.053414	1	12107	36.24	28.594	1	49823			15946	1568	13416	13809	15946	15946		
PQLQGIPVLVLGNK	14	Unmodified	_PQLQGIPVLVLGNK_			0	0	0	Q9NVJ2;Q96BM9	Q9NVJ2	Q9NVJ2	ARL8B;ARL8A	ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.636326	1474.88715	-1.3231	-0.00065183	-0.68608	-0.00033799	-2.0092	-0.00098982	492.635964339656	15.775	0.10644	15.775	15.721	15.828	0	738	19	0.829104889055312	0.0122420319698213	0.829104889055312	502.780657813312	0	7.42373729549649						134	13	3	NaN	NaN	NaN	0.00067357	1	17746	81.099	71.356	1	26958			15947	3069	13417	13810	15947	15947		
PQLQGIPVLVLGNK	14	Unmodified	_PQLQGIPVLVLGNK_			0	0	0	Q9NVJ2;Q96BM9	Q9NVJ2	Q9NVJ2	ARL8B;ARL8A	ADP-ribosylation factor-like protein 8B;ADP-ribosylation factor-like protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.450851	1474.88715	1.2945	0.00095592	0.19838	0.00014649	1.4929	0.0011024	738.451477551085	15.775	0.23057	15.775	15.668	15.899	0	435	43	1.03374239103424	0.0281717327026458	1.03374239103424	417.919758175522	0	11.3892240664485						782	27	5	NaN	NaN	NaN	9.1606E-09	1	17747	156.57	144.55	1	457900			15948	3069	13417	13810	15948	15948		
PQNEYIELHR	10	Unmodified	_PQNEYIELHR_			0	0	0	O95478	O95478	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.554443	1297.6415	-0.94982	-0.0004118	-1.1386	-0.00049366	-2.0885	-0.00090546	433.554063467268	5.576	0.12418	5.576	5.5405	5.6647	0	882	28	0.730840773481911	0.0184874931808973	0.730840773481911	443.75332823543	0	11.2252722171856						220	15	4	NaN	NaN	NaN	0.00023262	1	12286	81.163	74.9	1	64931			15949	438	13418	13811	15949	15949		
PQNLLIDDK	9	Unmodified	_PQNLLIDDK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.290214	1054.56587	0.59308	0.00031332	1.1423	0.00060344	1.7353	0.00091676	528.290641998579	7.066	0.30154	7.066	6.9594	7.261	0	648	40	0.890187667287968	0.0264159589549013	0.890187667287968	361.213708983892	0	10.7188707068208						581	35	4	NaN	NaN	NaN	2.6953E-09	1	5583	179.36	124.92	1	300090			15950	540	13419	13812	15950	15950		
PQPAPQAGPIPVAPIGTLK	19	Unmodified	_PQPAPQAGPIPVAPIGTLK_			0	0	0	Q93052	Q93052	Q93052	LPP	Lipoma-preferred partner	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.538186	1851.06182	1.6047	0.0014868	0.18682	0.0001731	1.7915	0.0016599	926.538277531383	13.132	0.10642	13.132	13.079	13.185	0	201	61	1.18983705239708	0.039837296457305	1.18983705239708	480.115762478025	0	16.0749019583222						496	13	4	NaN	NaN	NaN	0.0010408	1	28532	61.503	54.297	1	116720			15951	2455	13420	13813	15951	15951		
PQPPVAEATPR	11	Unmodified	_PQPPVAEATPR_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.814387	1161.61422	2.0359	0.0011845	-3.3202	-0.0019317	-1.2842	-0.00074718	581.812583882679	4.4411	0.20394	4.4411	4.3081	4.512	0	603	82	0.920633820089869	0.0547120326141308	0.920633820089869	373.123860938064	0	22.1742503949736						548	24	3	NaN	NaN	NaN	0.019314	1	8388	33.723	14.467	1	142340			15952	3215	13421	13814	15952	15952		
PQPQQDSLMHLLIPTLFHMK	20	Unmodified	_PQPQQDSLMHLLIPTLFHMK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	594.315709	2373.23373	-1.3417	-0.00079738	0.79005	0.00046954	-0.55163	-0.00032784	594.567393758379	18.781	0.062095	18.781	18.754	18.816	0	702	19	0.853568545818287	0.0122216343597983	0.853568545818287	687.721577036319	0	9.84699084456554						116	8	4	NaN	NaN	NaN	0.001846	1	36231	27.669	24.924	1	22534			15953	2013	13422	13815	15953	15953		
PQQAAGMLSPK	11	Unmodified	_PQQAAGMLSPK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.297516	1126.58048	2.0063	0.0011322	-2.1004	-0.0011853	-0.094087	-5.3093E-05	564.296457696165	4.8135	0.14189	4.8135	4.7514	4.8933	0	588	55	0.93076847747433	0.0364923641742785	0.93076847747433	377.368948446323	0	14.7953926546116						368	17	3	NaN	NaN	NaN	0.0068456	1	7436	53.517	38.754	1	115640			15954	1666	13423	13816	15954	15954		
PQQIPIDSTVSFGASTR	17	Unmodified	_PQQIPIDSTVSFGASTR_			0	0	0	Q12972	Q12972	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.465415	1802.91628	1.4656	0.0013227	-0.5181	-0.00046757	0.94751	0.0008551	902.96659974945	11.66	0.13303	11.66	11.624	11.758	0	300	34	1.12400150285141	0.0219935068303474	1.12400150285141	453.640281995198	0	8.87644777633454						249	16	3	NaN	NaN	NaN	0.067706	1	27294	19.197	18.316	1	76820			15955	1612	13424	13817	15955	15955		
PQSICCLHTMLSLLSK	16	Unmodified	_PQSICCLHTMLSLLSK_			0	0	0	Q9H2M9	Q9H2M9	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.987825	1886.94165	-1.183	-0.00074525	-1.7069	-0.0010753	-2.8898	-0.0018206	630.321325264724	16.129	0.062106	16.129	16.103	16.165	0	729	22	0.835224628594324	0.0142754238517586	0.835224628594324	505.463625850362	0	8.63924177236561						135	8	4	NaN	NaN	NaN	0.0030401	1	29307	45.654	42.569	1	26433			15956	2870	13425	13818	15956	15956		
PQVIADYESGR	11	Unmodified	_PQVIADYESGR_			0	0	0	O60869	O60869	O60869	EDF1	Endothelial differentiation-related factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.806759	1233.59897	2.1659	0.0013381	0.26936	0.00016641	2.4352	0.0015045	617.807096384113	6.0904	0.36368	6.0904	5.9573	6.321	0	591	46	0.928742107665821	0.0303997669355048	0.928742107665821	376.152210146093	0	12.3122871530562						654	42	4	NaN	NaN	NaN	4.5475E-08	1	10427	171.34	153.87	1	377310			15957	289	13426	13819	15957	15957		
PQVSSIFTSFLDGLK	15	Unmodified	_PQVSSIFTSFLDGLK_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.940513	1637.86647	1.232	0.0010102	-1.8928	-0.001552	-0.66078	-0.0005418	820.440632579279	20.031	0.035463	20.031	20.022	20.057	0	354	49	1.08796502040166	0.0320633273286326	1.08796502040166	439.433762620171	0	12.9505161525703						152	5	4	NaN	NaN	NaN	0.0026099	1	22713	55.604	47.229	1	70192			15958	49	13427	13820	15958	15958		
PQWHPPWK	8	Unmodified	_PQWHPPWK_			0	0	0	O43660	O43660	O43660	PLRG1	Pleiotropic regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.187255	1074.53993	-1.2037	-0.00043234	-0.45827	-0.00016461	-1.6619	-0.00059694	359.18703796307	7.9704	0.19509	7.9704	7.8552	8.0502	0	885	16	0.728786607772777	0.0102722617102058	0.728786607772777	443.470841395702	0	6.25073031677078						135	23	2	NaN	NaN	NaN	0.050892	1	6065	32.128	19.3	1	24502			15959	214	13428	13821	15959	15959		
PQYLEELPGQLK	12	Unmodified	_PQYLEELPGQLK_			0	0	0	P21266	P21266	P21266	GSTM3	Glutathione S-transferase Mu 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.882467	1413.75038	0.62314	0.00044111	3.2107	0.0022728	3.8338	0.0027139	707.884711851951	11.908	0.12413	11.908	11.864	11.988	0	444	25	1.02770517576159	0.0161048002118316	1.02770517576159	415.645984117752	0	6.51343954564197						187	15	2	NaN	NaN	NaN	0.0019715	1	15892	61.577	48.403	1	62626			15960	788	13429	13822	15960	15960		
PQYQTWEEFSR	11	Unmodified	_PQYQTWEEFSR_			0	0	0	P49458	P49458	P49458	SRP9	Signal recognition particle 9 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.836048	1469.65754	1.8373	0.0013519	0.83641	0.00061546	2.6737	0.0019674	735.836614854832	10.347	0.25717	10.347	10.277	10.534	0	474	52	1.00756305028564	0.0342629150938795	1.00756305028564	407.34948463834	0	13.8522158010283						1006	30	5	NaN	NaN	NaN	4.9822E-18	1	17564	187.33	161.47	1	709160			15961	1133	13430	13823	15961	15961		
PSAVPLPVR	9	Unmodified	_PSAVPLPVR_			0	0	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.287277	934.560001	-1.6299	-0.00076326	0.22704	0.00010632	-1.4029	-0.00065694	468.287471499694	7.8995	0.12411	7.8995	7.8552	7.9793	0	786	37	0.796423123669906	0.0245352049516095	0.796423123669906	323.700949771914	0	9.97217296892092						193	15	2	NaN	NaN	NaN	0.0015129	1	2970	78.178	65.626	1	58245			15962	1472	13431	13824	15962	15962		
PSDALILGK	9	Unmodified	_PSDALILGK_			0	0	0	Q13126	Q13126	Q13126	MTAP	S-methyl-5-thioadenosine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.271293	912.528032	0.57027	0.00026077	-1.6281	-0.00074446	-1.0578	-0.00048369	457.270846396944	7.6956	0.21292	7.6956	7.6156	7.8285	0	741	58	0.827064408645228	0.0387907136666801	0.827064408645228	336.272480924394	0	15.7717456889355						811	25	4	NaN	NaN	NaN	0.010261	1	2551	67.464	43.343	1	446400			15963	1630	13432	13825	15963	15963		
PSDEEMLFIYGHYK	14	Unmodified	_PSDEEMLFIYGHYK_			0	0	0	P07108	P07108	P07108	DBI	Acyl-CoA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	576.936113	1727.78651	-0.37567	-0.00021674	0.95124	0.00054881	0.57557	0.00033207	577.271261116456	12.582	0.097516	12.582	12.538	12.635	0	645	28	0.892219381832517	0.0182854326605286	0.892219381832517	540.318336381827	0	11.0734587886519						249	12	4	NaN	NaN	NaN	0.0025141	1	25251	65.933	55.682	1	65094			15964	552	13433	13826	15964	15964		
PSDEEMLFIYGHYK	14	Unmodified	_PSDEEMLFIYGHYK_			0	0	0	P07108	P07108	P07108	DBI	Acyl-CoA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.900531	1727.78651	1.4274	0.0012346	0.20091	0.00017376	1.6283	0.0014083	864.900768891244	12.582	0.062057	12.582	12.556	12.618	0	210	22	1.18386433251387	0.0139401755666928	1.18386433251387	477.959113200671	0	5.62803842360046						132	8	4	NaN	NaN	NaN	3.0244E-06	1	25252	64.906	60.378	1	24182			15965	552	13433	13826	15965	15965		
PSDIFGR	7	Unmodified	_PSDIFGR_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	396.205953	790.397353	-1.4523	-0.00057543	1.895	0.0007508	0.44263	0.00017537	396.206792790315	6.0904	0.23942	6.0904	6.0106	6.25	0	837	40	0.761618911097395	0.0266520851211307	0.761618911097395	310.371694254083	0	10.8611441941882						239	28	2	NaN	NaN	NaN	0.0039634	1	906	84.064	65.109	1	49350			15966	1907	13434	13827	15966	15966		
PSDSSPPFK	9	Unmodified	_PSDSSPPFK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.234907	960.455261	0.87149	0.00041939	0.70341	0.0003385	1.5749	0.0007579	481.235207232118	3.8736	0.25713	3.8736	3.7849	4.042	0	780	76	0.800512323802183	0.0510688329971924	0.800512323802183	325.235836757879	0	20.7484808643554						621	30	2	NaN	NaN	NaN	1.9276E-05	1	3447	105.81	69.239	1	172560			15967	1098	13435	13828	15967	15967		
PSDVMLVHFR	10	Unmodified	_PSDVMLVHFR_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	400.877981	1199.61211	-1.8732	-0.00075091	-1.0599	-0.00042489	-2.9331	-0.0011758	400.877562837976	9.6115	0.15961	9.6115	9.5672	9.7268	0	828	31	0.767766820543916	0.0204887515295875	0.767766820543916	466.574564070767	0	12.4510854825677						390	19	4	NaN	NaN	NaN	0.018655	1	9443	69.905	43.448	1	188560			15968	2391	13436	13829	15968	15968		
PSEELPAEATSSVEPEK	17	Unmodified	_PSEELPAEATSSVEPEK_			0	0	0	O95104	O95104	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.430903	1798.84725	3.4204	0.0030798	-0.30148	-0.00027146	3.1189	0.0028083	900.431622369954	7.7487	0.11525	7.7487	7.6956	7.8108	0	339	52	1.09798411722691	0.0340321108810946	1.09798411722691	443.147471347044	0	13.7353934769556						309	14	3	NaN	NaN	NaN	0.0012596	1	27184	41.317	37.334	1	63574			15969	404	13437	13830	15969	15969		
PSENLGQVLFGER	13	Unmodified	_PSENLGQVLFGER_			0	0	0	Q99805	Q99805	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.372798	1444.73104	0.98869	0.00071519	-1.631	-0.0011798	-0.64229	-0.00046462	723.370651084201	14.178	0.11528	14.178	14.134	14.249	0	486	43	0.999498404980629	0.0282340678314075	0.999498404980629	404.154044034169	0	11.4166392229706						313	14	3	NaN	NaN	NaN	2.6439E-05	1	16819	87.573	75.615	1	87994			15970	2675	13438	13831	15970	15970		
PSETPQAEVGPTGCPHR	17	Unmodified	_PSETPQAEVGPTGCPHR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.284575	1818.8319	1.2883	0.00078235	1.3315	0.00080857	2.6197	0.0015909	607.619758670735	4.0154	0.088654	4.0154	3.9711	4.0598	0	690	43	0.86171403876517	0.028505272317873	0.86171403876517	521.636907957487	0	17.2556108447405						285	11	4	NaN	NaN	NaN	0.0024029	1	27679	55.782	54.901	1	59916			15971	970	13439	13832	15971	15971		
PSFFDFEGK	9	Unmodified	_PSFFDFEGK_			0	0	0	Q9BR61	Q9BR61	Q9BR61	ACBD6	Acyl-CoA-binding domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.250557	1072.48656	1.0363	0.00055676	-0.96051	-0.00051604	0.075801	4.0724E-05	537.250069494095	13.54	0.088669	13.54	13.504	13.593	0	615	25	0.912521036363781	0.0162300673431094	0.912521036363781	370.196226141592	0	6.58429717344927						183	11	3	NaN	NaN	NaN	0.0016114	1	6009	74.269	50.96	1	48068			15972	2701	13440	13833	15972	15972		
PSFFTDR	7	Unmodified	_PSFFTDR_			0	0	0	Q9H857	Q9H857	Q9H857	NT5DC2	5-nucleotidase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.211235	868.407917	-2.0435	-0.00088933	1.3797	0.00060046	-0.66375	-0.00028887	435.211648807467	7.456	0.16846	7.456	7.4028	7.5713	0	819	28	0.773912161060781	0.0184334553037235	0.773912161060781	314.898455388057	0	7.50042045424254						225	20	3	NaN	NaN	NaN	0.052728	1	1830	40.203	12.498	1	50951			15973	2923	13441	13834	15973	15973		
PSFLEYFEQK	10	Unmodified	_PSFLEYFEQK_			0	0	0	Q13043	Q13043	Q13043	STK4	Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.316428	1286.6183	0.61334	0.00039518	1.3379	0.00086202	1.9512	0.0012572	644.316838543886	15.81	0.13303	15.81	15.757	15.89	0	546	31	0.959108205975751	0.0202202547375568	0.959108205975751	388.273659368858	0	8.18572112239877						176	16	2	NaN	NaN	NaN	0.009947	1	11956	65.404	37.815	1	58927			15974	1620	13442	13835	15974	15974		
PSGEEVLQDIQVMLK	15	Unmodified	_PSGEEVLQDIQVMLK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.442563	1684.87057	0.54286	0.00045787	1.3266	0.0011189	1.8695	0.0015768	843.443510131468	19.109	0.044362	19.109	19.091	19.135	0	309	37	1.11800162319566	0.0240044781973821	1.11800162319566	451.459984794465	0	9.69324295881859						98	6	2	NaN	NaN	NaN	0.015558	1	24054	48.822	41.247	1	22776			15975	951	13443	13836	15975	15975		
PSGPTPASGQLSSGDK	16	Unmodified	_PSGPTPASGQLSSGDK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.362627	1484.7107	3.0844	0.0022928	-3.7286	-0.0027717	-0.64426	-0.00047892	743.359689074726	3.8736	0.097522	3.8736	3.8292	3.9268	0	480	31	1.00353128488872	0.0201616152840689	1.00353128488872	405.681123221241	0	8.1504053312126						233	12	3	NaN	NaN	NaN	0.00017314	1	18047	49.097	41.539	1	64880			15976	978	13444	13837	15976	15976		
PSGVSAALALK	11	Unmodified	_PSGVSAALALK_			0	0	0	Q9Y3A4	Q9Y3A4	Q9Y3A4	RRP7A	Ribosomal RNA-processing protein 7 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.303124	1012.5917	-0.10644	-5.3999E-05	-1.4448	-0.00073293	-1.5512	-0.00078693	507.302713890475	8.5116	0.12414	8.5116	8.4584	8.5825	0	687	25	0.863749705078866	0.0162819401050979	0.863749705078866	350.673122858078	0	6.61029317783851						128	15	2	NaN	NaN	NaN	0.033944	1	4578	55.235	37.765	1	42701			15977	3375	13445	13838	15977	15977		
PSHCTIYVAK	10	Unmodified	_PSHCTIYVAK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.297516	1174.58048	2.1927	0.00129	-0.037462	-2.2039E-05	2.1552	0.0012679	588.297799447126	3.0932	0.10642	3.0932	3.0666	3.173	0	603	25	0.920633820089869	0.0162210713020401	0.920633820089869	373.075511874048	0	6.57338927497068						167	13	3	NaN	NaN	NaN	0.064161	1	8722	37.591	24.995	1	30245			15978	3161	13446	13839	15978	15978		
PSHLVDAHTAEVNCLSFNPYSEFILATGSADK	32	Unmodified	_PSHLVDAHTAEVNCLSFNPYSEFILATGSADK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	873.420047	3489.65108	0.40345	0.00035238	-0.86456	-0.00075512	-0.46111	-0.00040274	873.920936685783	16.688	0.12417	16.688	16.644	16.768	0	546	70	0.959108205975751	0.0465162659226231	0.959108205975751	771.315729090674	0	37.4084251819974						746	15	6	NaN	NaN	NaN	5.8028E-11	1	38649	64.092	62.455	1	194800			15979	1890	13447	13840	15979	15979		
PSHSVDAHTAEVNCLSFNPYSEFILATGSADK	32	Unmodified	_PSHSVDAHTAEVNCLSFNPYSEFILATGSADK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	866.907039	3463.59905	0.80043	0.0006939	-1.2818	-0.0011112	-0.48132	-0.00041726	867.407110149801	16.174	0.09754	16.174	16.138	16.236	0	555	67	0.953040030838688	0.0445338744447158	0.953040030838688	766.458599621794	0	35.8152542790799						545	12	6	NaN	NaN	NaN	4.065E-12	1	38639	113.61	110.82	1	111160			15980	1582	13448	13841	15980	15980		
PSIIFFDEIDGLAPVR	16	Unmodified	_PSIIFFDEIDGLAPVR_			0	0	0	Q6PL18;Q9ULI0	Q6PL18	Q6PL18	ATAD2;ATAD2B	ATPase family AAA domain-containing protein 2;ATPase family AAA domain-containing protein 2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.98017	1787.94579	1.2234	0.0010949	-0.072254	-6.4666E-05	1.1512	0.0010303	895.481560858316	19.587	0.088706	19.587	19.561	19.649	0	273	34	1.14198628764525	0.0219662910275218	1.14198628764525	460.928287780057	0	8.86603019820086						156	11	3	NaN	NaN	NaN	0.0030303	1	26926	37.504	31.476	1	28910			15981	2080	13449	13842	15981	15981		
PSILPSK	7	Unmodified	_PSILPSK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	371.228897	740.44324	-1.1753	-0.00043632	0.44494	0.00016517	-0.7304	-0.00027115	371.229019149056	5.2479	0.23056	5.2479	5.1238	5.3544	0	846	55	0.755468431110051	0.0369209000619068	0.755468431110051	308.218717858608	0	15.0631211188347						345	27	2	NaN	NaN	NaN	0.031031	1	557	58.286	22.653	1	64683			15982	869	13450	13843	15982	15982		
PSILTYQYAEDLIR	14	Unmodified	_PSILTYQYAEDLIR_			0	0	0	Q9BXW7	Q9BXW7	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.44342	1680.87229	1.5924	0.0013399	-1.9161	-0.0016123	-0.32373	-0.0002724	841.441689229398	16.457	0.12412	16.457	16.386	16.51	0	336	31	1.09998710857178	0.0200285363602049	1.09998710857178	444.194178853428	0	8.08787593311757						300	15	4	NaN	NaN	NaN	1.6086E-05	1	23941	66.953	55.274	1	77622			15983	2790	13451	13844	15983	15983		
PSLDEAFVIQEQNVALNFIGSR	22	Unmodified	_PSLDEAFVIQEQNVALNFIGSR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.423689	2446.24924	0.24957	0.00020376	-0.23322	-0.00019041	0.01635	1.3349E-05	816.757550268135	19.782	0.017753	19.782	19.765	19.782	0	546	16	0.959108205975751	0.0101122256198155	0.959108205975751	579.467061066077	0	6.10953135865441						22	3	3	NaN	NaN	NaN	0.036721	1	36557	28.664	28.664	1	2968.8			15984	918	13452	13845	15984	15984		
PSLINIMIEPQATR	14	Unmodified	_PSLINIMIEPQATR_			0	0	0	Q9UJ83	Q9UJ83	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.934708	1581.85486	1.2235	0.00096894	-1.7671	-0.0013994	-0.54358	-0.00043048	791.934896531582	15.65	0.13298	15.65	15.606	15.739	0	357	31	1.08596037261705	0.020047861495702	1.08596037261705	438.754319367654	0	8.09982209951738						275	16	4	NaN	NaN	NaN	0.0044703	1	21031	54.199	45.393	1	58928			15985	3245	13453	13846	15985	15985		
PSLYPGLFLFTTPCR	15	Unmodified	_PSLYPGLFLFTTPCR_			0	0	0	Q9H9Y6	Q9H9Y6	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.958183	1767.90181	0.98162	0.0008687	0.080279	7.1043E-05	1.0619	0.00093974	885.459745393774	19.197	0.097522	19.197	19.153	19.25	0	288	28	1.13199748998575	0.0179847847938348	1.13199748998575	456.936474394451	0	7.25964874404548						190	12	3	NaN	NaN	NaN	0.0053237	1	26349	38.584	34.734	1	38950			15986	2941	13454	13847	15986	15986		
PSMFDVSR	8	Unmodified	_PSMFDVSR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.723652	937.432752	-0.029843	-1.4018E-05	-0.59626	-0.00028008	-0.6261	-0.00029409	469.723988106439	7.8729	0.30162	7.8729	7.8108	8.1124	0	732	43	0.833184998970724	0.0285607760310633	0.833184998970724	338.627539342346	0	11.6078245780403						743	35	5	NaN	NaN	NaN	7.3432E-05	1	3014	121.31	100.65	1	456120			15987	1608	13455	13848	15987	15987		
PSNILYVDESGNPECLR	17	Unmodified	_PSNILYVDESGNPECLR_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.964922	1961.91529	1.7295	0.0016983	-0.033256	-3.2656E-05	1.6963	0.0016657	982.466404859577	11.456	0.09756	11.456	11.412	11.509	0	234	58	1.16792504164217	0.0378844489628292	1.16792504164217	471.075849184192	0	15.2804746278466						396	12	4	NaN	NaN	NaN	0.00016283	1	30956	70.598	69.229	1	91167			15988	1845	13456	13849	15988	15988		
PSNILYVDESGNPESIR	17	Unmodified	_PSNILYVDESGNPESIR_			0	0	0	P51812	P51812	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.465612	1888.91667	2.6046	0.0024625	-1.4733	-0.0013929	1.1313	0.0010696	945.464444820053	11.048	0.12416	11.048	11.004	11.128	0	276	37	1.13998907770044	0.0239714689101356	1.13998907770044	459.932843854074	0	9.6713785095539						342	15	4	NaN	NaN	NaN	6.5275E-10	1	29352	133.13	127.43	1	84146			15989	1200	13457	13850	15989	15989		
PSNPSSHEVVAWIR	14	Unmodified	_PSNPSSHEVVAWIR_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.938956	1577.79504	-1.4991	-0.00078995	-1.5699	-0.00082724	-3.069	-0.0016172	526.938073349514	8.8044	0.19532	8.8044	8.7156	8.9109	0	792	28	0.792332785124922	0.0184103687161689	0.792332785124922	480.190539062891	0	11.157540170157						513	23	4	NaN	NaN	NaN	1.1059E-06	1	20908	106.11	89.825	1	263650			15990	287	13458	13851	15990	15990		
PSNTEDFIEDIVK	13	Unmodified	_PSNTEDFIEDIVK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.869753	1505.72495	1.4181	0.0010691	1.1655	0.00087864	2.5836	0.0019477	753.870698179922	15.384	0.16858	15.384	15.331	15.5	0	414	37	1.04781950764076	0.0241238779184587	1.04781950764076	423.530181941695	0	9.75090683981324						564	20	6	NaN	NaN	NaN	2.0295E-05	1	18674	89.382	81.381	1	196030			15991	1076	13459	13852	15991	15991		
PSPAISVSVSAPAFYAPQK	19	Unmodified	_PSPAISVSVSAPAFYAPQK_			0	0	0	Q15942	Q15942	Q15942	ZYX	Zyxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.009458	1916.00436	2.1842	0.0020946	-0.3841	-0.00036836	1.8001	0.0017263	959.510531602498	13.584	0.097555	13.584	13.54	13.637	0	201	61	1.18983705239708	0.039837296457305	1.18983705239708	479.994703699931	0	16.0708487525307						427	12	4	NaN	NaN	NaN	1.8622E-14	1	29979	108.91	96.23	1	103460			15992	1876	13460	13853	15992	15992		
PSPAPPSTTTAPDASGPQK	19	Unmodified	_PSPAPPSTTTAPDASGPQK_			0	0	0	P40855	P40855	P40855	PEX19	Peroxisomal biogenesis factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.947055	1805.87956	2.7881	0.0025203	-1.7779	-0.0016071	1.0102	0.00091313	903.945425432357	4.6893	0.088642	4.6893	4.6539	4.7425	0	306	37	1.12000185836644	0.0240077828755938	1.12000185836644	452.020391978075	0	9.68927626761121						261	11	4	NaN	NaN	NaN	1.1984E-07	1	27375	74.733	72.431	1	57717			15993	1021	13461	13854	15993	15993		
PSPDHIQAAIAQLDLLGALEHK	22	Unmodified	_PSPDHIQAAIAQLDLLGALEHK_			0	0	0	Q9H6R0	Q9H6R0	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	585.069488	2336.24884	-0.03329	-1.9477E-05	-0.14939	-8.7406E-05	-0.18269	-0.00010688	585.320429769142	17.557	0.079818	17.557	17.513	17.592	0	558	22	0.951016745717027	0.014164957610621	0.951016745717027	766.306268841568	0	11.4137798979658						177	10	4	NaN	NaN	NaN	0.062049	1	35944	14.659	14.325	1	36296			15994	2905	13462	13855	15994	15994		
PSPIQEESIPIALSGR	16	Unmodified	_PSPIQEESIPIALSGR_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.459601	1692.90465	1.9863	0.0016833	-0.17904	-0.00015173	1.8072	0.0015316	847.459378604735	13.238	0.15962	13.238	13.194	13.354	0	351	58	1.08996939197032	0.0380778290507997	1.08996939197032	440.123260634837	0	15.3756044923785						560	19	4	NaN	NaN	NaN	0.0013485	1	24291	77.696	63.898	1	174960			15995	847	13463	13856	15995	15995		
PSPLLVGR	8	Unmodified	_PSPLLVGR_			0	0	0	Q13283;Q9UN86	Q13283;Q9UN86	Q13283	G3BP1;G3BP2	Ras GTPase-activating protein-binding protein 1;Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	419.760895	837.507237	-0.98383	-0.00041297	0.036728	1.5417E-05	-0.9471	-0.00039755	419.760899681342	6.7909	0.23937	6.7909	6.7289	6.9683	0	810	49	0.78005493425781	0.0327455032582672	0.78005493425781	317.579986484692	0	13.3315181091565						721	28	4	NaN	NaN	NaN	0.00069162	1	1400	84.699	59.88	1	392800			15996	1649;3292	13464	13857	15996	15996		
PSPLPVIPDTIK	12	Unmodified	_PSPLPVIPDTIK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.879196	1275.74384	1.0124	0.00064678	-0.97035	-0.00061994	0.042025	2.6849E-05	638.878564752316	13.203	0.15963	13.203	13.123	13.283	0	528	67	0.971237000454584	0.0444784249305462	0.971237000454584	393.219338219157	0	18.0077332391927						574	19	2	NaN	NaN	NaN	0.002487	1	11659	79.311	70.334	1	262060			15997	2149	13465	13858	15997	15997		
PSPPYFGLLLASVGR	15	Unmodified	_PSPPYFGLLLASVGR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.440483	1572.86641	0.9204	0.00072476	-1.0096	-0.00079499	-0.089181	-7.0225E-05	787.439692372549	19.357	0.1685	19.357	19.259	19.428	0	426	64	1.03977710643793	0.042208063948975	1.03977710643793	420.115991559617	0	17.0539267771366						474	20	3	NaN	NaN	NaN	0.0040196	1	20762	59.67	56.955	1	111120			15998	741	13466	13859	15998	15998		
PSPSQFMPLVVDYR	14	Unmodified	_PSPSQFMPLVVDYR_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.413608	1634.81266	1.0245	0.00083843	-0.27854	-0.00022796	0.74592	0.00061047	818.413779999443	15.828	0.15964	15.828	15.748	15.908	0	378	40	1.07192009927972	0.0260927771036219	1.07192009927972	432.959927277117	0	10.5391501519873						302	19	2	NaN	NaN	NaN	0.0047232	1	22623	42.446	27.991	1	95974			15999	2345	13467	13860	15999	15999		
PSQMEHAMETMMFTFHK	17	Unmodified	_PSQMEHAMETMMFTFHK_			0	0	0	P60903	P60903	P60903	S100A10	Protein S100-A10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	521.478063	2081.88314	-0.19961	-0.00010409	-2.7181	-0.0014174	-2.9177	-0.0015215	521.727649535025	14.462	0.16848	14.462	14.409	14.577	0	729	34	0.835224628594324	0.0224359291106897	0.835224628594324	673.488999616153	0	18.0913624130646						595	20	6	NaN	NaN	NaN	0.0010143	1	33052	79.235	79.113	1	332990			16000	1315	13468	13861	16000	16000		
PSQMEHAMETMMFTFHK	17	Unmodified	_PSQMEHAMETMMFTFHK_			0	0	0	P60903	P60903	P60903	S100A10	Protein S100-A10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.968325	2081.88314	1.1639	0.00080884	-1.6922	-0.001176	-0.52833	-0.00036718	695.301799502303	14.453	0.12414	14.453	14.418	14.542	0	534	43	0.967195187796614	0.0282966100811786	0.967195187796614	584.930129536509	0	17.112926128111						472	15	6	NaN	NaN	NaN	0.0020808	1	33053	78.888	78.369	1	194890			16001	1315	13468	13861	16001	16001		
PSQVVAETR	9	Unmodified	_PSQVVAETR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.766906	985.519259	0.28962	0.000143	-0.40184	-0.00019842	-0.11223	-5.5414E-05	493.76677456494	2.499	0.15079	2.499	2.4813	2.6321	0	738	25	0.829104889055312	0.016324979319214	0.829104889055312	336.731639303252	0	6.63020701037482						158	18	2	NaN	NaN	NaN	0.009948	1	3961	49.16	35.165	1	30757			16002	679	13469	13862	16002	16002		
PSSAPELQAVR	11	Unmodified	_PSSAPELQAVR_			0	0	0	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.811845	1153.60914	1.2038	0.00069558	0.024744	1.4297E-05	1.2286	0.00070988	577.811968518094	5.6913	0.1419	5.6913	5.6559	5.7978	0	624	46	0.906433495720521	0.0304545980014471	0.906433495720521	367.398504765257	0	12.3439544343676						259	17	2	NaN	NaN	NaN	0.00013899	1	8164	107.08	85.99	1	135860			16003	106	13470	13863	16003	16003		
PSSGTVQELNFR	12	Unmodified	_PSSGTVQELNFR_			0	0	0	Q13085;O00763	Q13085	Q13085	ACACA;ACACB	Acetyl-CoA carboxylase 1;Biotin carboxylase;Acetyl-CoA carboxylase 2;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.838591	1333.66263	1.5669	0.0010465	-3.1029	-0.0020722	-1.5359	-0.0010258	667.837681691031	8.1124	0.23958	8.1124	8.0502	8.2898	0	528	82	0.971237000454584	0.0545607436411819	0.971237000454584	393.036400863126	0	22.0794289129316						531	28	2	NaN	NaN	NaN	0.00042983	1	13392	79.311	71.753	1	154420			16004	1625	13471	13864	16004	16004		
PSSIEAIPFVIEK	13	Unmodified	_PSSIEAIPFVIEK_			0	0	0	Q9UJ83	Q9UJ83	Q9UJ83	HACL1	2-hydroxyacyl-CoA lyase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.400492	1428.78643	1.2096	0.00086532	-4.8568	-0.0034746	-3.6473	-0.0026093	715.396098726349	15.101	0.14187	15.101	15.038	15.18	0	483	109	1.00151498427745	0.0724516959248132	1.00151498427745	405.012333997163	0	29.2994422741779						354	17	2	NaN	NaN	NaN	0.00041851	1	16361	83.775	51.634	1	105380			16005	3245	13472	13865	16005	16005		
PSSNLLEQFILLAK	14	Unmodified	_PSSNLLEQFILLAK_			0	0	0	Q9H9Q2	Q9H9Q2	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.953423	1571.89229	0.75881	0.00059715	-1.508	-0.0011867	-0.7492	-0.00058959	786.952245763355	19.995	0.035482	19.995	19.986	20.022	0	399	46	1.0578662689527	0.0301236649306122	1.0578662689527	427.427127708843	0	12.1713603649565						104	5	3	NaN	NaN	NaN	0.070142	1	20736	35.845	33.174	1	29268			16006	2938	13473	13866	16006	16006		
PSSSDTALGGGGGLSWAEK	19	Unmodified	_PSSSDTALGGGGGLSWAEK_			0	0	0	Q14004	Q14004	Q14004	CDK13	Cyclin-dependent kinase 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.951479	1775.83261	0.6165	0.00036556	-9.4202	-0.0055857	-8.8037	-0.0052202	593.280124918022	7.1368	0.17733	7.1368	7.0836	7.261	0	687	154	0.863749705078866	0.10368967751005	0.863749705078866	522.96492868295	0	62.7798359702481						1023	21	4	NaN	NaN	NaN	0.0669	1	26552	14.949	12.813	1	345720			16007	1712	13474	13867	16007	16007		
PSSSPVIFAGGQDR	14	Unmodified	_PSSSPVIFAGGQDR_			0	0	0	Q15366	Q15366	Q15366	PCBP2	Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.357148	1416.69974	2.2492	0.0015955	-0.44975	-0.00031903	1.7995	0.0012765	709.357172064861	7.8552	0.29268	7.8552	7.802	8.0947	0	501	46	0.98941132619024	0.0302737974651172	0.98941132619024	400.150329584008	0	12.2437147349745						803	34	4	NaN	NaN	NaN	1.8709E-08	1	15987	148.76	131.77	1	599900			16008	1834	13475	13868	16008	16008		
PSSTITYLTDSPK	13	Unmodified	_PSSTITYLTDSPK_			0	0	0	Q5SWH9	Q5SWH9	Q5SWH9	TMEM69	Transmembrane protein 69	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.361564	1408.70858	1.7225	0.001215	0.18301	0.00012909	1.9055	0.001344	705.361769004928	8.547	0.13301	8.547	8.4938	8.6268	0	441	31	1.02971785871157	0.0201254424104516	1.02971785871157	416.474446882012	0	8.1398340576867						214	16	4	NaN	NaN	NaN	0.0035228	1	15720	61.577	57.97	1	50062			16009	1983	13476	13869	16009	16009		
PSSVPHGAGYELLIQK	16	Unmodified	_PSSVPHGAGYELLIQK_			0	0	0	Q96CN7	Q96CN7	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.973667	1694.89917	0.11351	6.4241E-05	-0.22341	-0.00012645	-0.10991	-6.2205E-05	566.308014225873	9.2745	0.16852	9.2745	9.1858	9.3544	0	663	43	0.880024865079826	0.0284617756829997	0.880024865079826	533.015673569311	0	17.238799877861						398	20	4	NaN	NaN	NaN	0.0020377	1	24349	46.358	32.56	1	107970			16010	2493	13477	13870	16010	16010		
PSTFAYPAPLEVPK	14	Unmodified	_PSTFAYPAPLEVPK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.905942	1515.79733	1.8937	0.0014371	2.2842	0.0017335	4.1779	0.0031706	758.905795800271	13.034	0.31922	13.034	12.83	13.15	0	351	121	1.08996939197032	0.0803243649766512	1.08996939197032	440.540556826388	0	32.4652607075259						1806	37	5	NaN	NaN	NaN	0.0026883	1	19011	76.255	61.107	1	629390			16011	2641	13478	13871	16011	16011		
PSVDYVCQLK	10	Unmodified	_PSVDYVCQLK_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.802631	1207.59071	1.1969	0.00072391	-0.45634	-0.00027599	0.74059	0.00044791	604.802712066404	8.139	0.13313	8.139	8.0591	8.1922	0	564	31	0.946969335010767	0.0202398580816178	0.946969335010767	383.625867218779	0	8.19935009707297						295	16	4	NaN	NaN	NaN	0.0023188	1	9671	69.716	59.014	1	115300			16012	233	13479	13872	16012	16012		
PSVEGQQPAAAAACEPVDHAQSESILK	27	Unmodified	_PSVEGQQPAAAAACEPVDHAQSESILK_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	930.783617	2789.32902	1.6151	0.0015033	1.2072	0.0011236	2.8223	0.0026269	931.119279535974	8.6712	0.062175	8.6712	8.6446	8.7068	0	468	52	1.01159370163332	0.034239256244545	1.01159370163332	610.75264331496	0	20.6720506688901						352	8	4	NaN	NaN	NaN	0.019463	1	37867	13.153	12.829	1	69724			16013	1920	13480	13873	16013	16013		
PSVEPSAGHDEL	12	Unmodified	_PSVEPSAGHDEL_			0	0	0	Q9HCN8	Q9HCN8	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.288399	1236.56225	1.4603	0.00090432	1.7937	0.0011108	3.254	0.0020152	619.79068788941	5.8687	0.24833	5.8687	5.7445	5.9929	0	594	76	0.926715457081489	0.050638233668732	0.926715457081489	375.321431133962	0	20.5085759446584						776	29	4	NaN	NaN	NaN	2.9097E-07	1	10512	146.27	141.37	1	229320			16014	2965	13481	13874	16014	16014		
PSVLFLHPDLGVGGAER	17	Unmodified	_PSVLFLHPDLGVGGAER_			0	0	0	Q9H553	Q9H553	Q9H553	ALG2	Alpha-1,3/1,6-mannosyltransferase ALG2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.652816	1762.93662	0.36644	0.00021571	-1.4063	-0.00082782	-1.0399	-0.00061212	588.651684411652	13.584	0.06208	13.584	13.549	13.611	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	535.31091215452	0	9.84629440775598						121	8	3	NaN	NaN	NaN	0.00070067	1	26227	58.338	57.456	1	24391			16015	2899	13482	13875	16015	16015		
PSVLLTLR	8	Unmodified	_PSVLLTLR_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	449.789653	897.564752	-0.572	-0.00025728	-0.92507	-0.00041609	-1.4971	-0.00067337	449.789102748111	10.986	0.16848	10.986	10.942	11.11	0	759	34	0.814815566123307	0.0224671474092853	0.814815566123307	331.374153734035	0	9.13707625271735						261	20	3	NaN	NaN	NaN	0.0018737	1	2286	82.716	68.181	1	72256			16016	672	13483	13876	16016	16016		
PSWADQVEEEGEDDK	15	Unmodified	_PSWADQVEEEGEDDK_			0	0	0	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.360478	1732.7064	2.6544	0.0023023	-1.3202	-0.0011451	1.3342	0.0011572	867.35919049984	8.9375	0.18639	8.9375	8.8753	9.0617	0	372	76	1.07593298845566	0.0501576941762703	1.07593298845566	434.374402044584	0	20.2496053653162						1195	22	5	NaN	NaN	NaN	3.6748E-24	1	25395	197.79	191.27	1	782810			16017	362	13484	13877	16017	16017		
PSYAFGSVGK	10	Unmodified	_PSYAFGSVGK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.758549	1011.50255	0.54238	0.00027486	0.12483	6.3257E-05	0.66721	0.00033811	506.75918549112	6.9328	0.35474	6.9328	6.853	7.2077	0	696	85	0.857641857947968	0.0570343451271362	0.857641857947968	348.198421750567	0	23.1556666396415						947	41	4	NaN	NaN	NaN	0.0016461	1	4543	72.042	56.543	1	710690			16018	1530	13485	13878	16018	16018		
PSYDTETDPSEGLMNVLK	18	Unmodified	_PSYDTETDPSEGLMNVLK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.46442	1994.91429	1.2359	0.001234	2.1894	0.0021861	3.4253	0.00342	998.968282714981	14.87	0.25716	14.87	14.772	15.03	-1.7764E-15	231	73	1.16991841121525	0.0478179014947668	1.16991841121525	471.825021606588	0	19.2848340445503						842	30	3	NaN	NaN	NaN	0.00011169	1	31536	65.408	63.933	1	473160			16019	2950	13486	13879	16019	16019		
PSYLIDK	7	Unmodified	_PSYLIDK_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	418.231636	834.448719	-0.79659	-0.00033316	0.54206	0.00022671	-0.25453	-0.00010645	418.232100225448	5.7179	0.28378	5.7179	5.5494	5.8332	0	807	52	0.782101955086014	0.0348139083039324	0.782101955086014	318.432174672495	0	14.1744544403432						424	33	3	NaN	NaN	NaN	0.06884	1	1369	51.43	19.302	1	94148			16020	3340	13487	13880	16020	16020		
PSYVLSGSAMNVVFSEDEMK	20	Unmodified	_PSYVLSGSAMNVVFSEDEMK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1095.5083	2189.00206	0.68477	0.00075017	1.8058	0.0019782	2.4905	0.0027284	1096.0116022405	16.191	0.17736	16.191	16.103	16.28	0	114	64	1.24744674793813	0.0416487582410145	1.24744674793813	502.783639304152	0	16.7865396062218						524	21	3	NaN	NaN	NaN	0.0023147	1	34558	36.96	36.525	1	114640			16021	922	13488	13881	16021	16021		
PTAAELEEVLQVNSLIQTQK	20	Unmodified	_PTAAELEEVLQVNSLIQTQK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.733752	2210.17943	0.071106	5.2458E-05	1.8527	0.0013668	1.9238	0.0014193	738.06963612378	18.036	0.070962	18.036	18.009	18.08	0	465	25	1.01360860968299	0.0161159257109076	1.01360860968299	612.763928599796	0	9.74267370787891						170	9	4	NaN	NaN	NaN	0.001109	1	34797	42.495	40.647	1	39124			16022	2726	13489	13882	16022	16022		
PTALIGVAAIGGAFSEQILK	20	Unmodified	_PTALIGVAAIGGAFSEQILK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.561858	1955.10916	1.1359	0.0011115	-0.39263	-0.00038421	0.74323	0.0007273	979.063365028217	19.632	0.07097	19.632	19.605	19.676	0	204	58	1.18784641916898	0.0378272416216301	1.18784641916898	479.122739252001	0	15.2577735064286						340	9	4	NaN	NaN	NaN	0.00070833	1	30804	48.363	43.547	1	67760			16023	1106	13490	13883	16023	16023		
PTALIGVAAIGGAFSEQILK	20	Unmodified	_PTALIGVAAIGGAFSEQILK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.710331	1955.10916	0.77778	0.00050766	0.67435	0.00044016	1.4521	0.00094782	652.711034835829	19.632	0.1153	19.632	19.605	19.72	0	429	34	1.03776581230406	0.0221211851351335	1.03776581230406	627.878380047527	0	13.3839578474276						174	14	4	NaN	NaN	NaN	0.065402	1	30805	16.102	15.979	1	37424			16024	1106	13490	13883	16024	16024		
PTDPDDPLADQNIK	14	Unmodified	_PTDPDDPLADQNIK_			0	0	0	Q9NW64	Q9NW64	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.870285	1537.72602	2.2924	0.0017648	-1.3199	-0.0010161	0.97246	0.00074867	769.869449149133	7.864	0.13298	7.864	7.8197	7.9527	-8.8818E-16	453	55	1.02166545906632	0.0362308083382761	1.02166545906632	412.880401306134	0	14.641770017383						631	16	5	NaN	NaN	NaN	0.042425	1	19655	38.1	35.798	1	152090			16025	3079	13491	13884	16025	16025		
PTEAFISGLLDK	12	Unmodified	_PTEAFISGLLDK_			0	0	0	Q96C90	Q96C90	Q96C90	PPP1R14B	Protein phosphatase 1 regulatory subunit 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.850635	1289.68672	0.35561	0.00022967	0.60111	0.00038823	0.95672	0.0006179	645.85122911981	14.799	0.20395	14.799	14.701	14.905	0	525	52	0.973257487423603	0.0343482903066424	0.973257487423603	393.991728006041	0	13.9047913084043						651	24	4	NaN	NaN	NaN	2.2679E-11	1	12063	144.27	114.51	1	371910			16026	2492	13492	13885	16026	16026		
PTENSSAVLLQWHEK	15	Unmodified	_PTENSSAVLLQWHEK_			0	0	0	Q9BPX5	Q9BPX5	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.296809	1737.8686	0.10655	6.1833E-05	4.2094	0.0024427	4.316	0.0025046	580.299860628866	9.4608	0.16847	9.4608	9.3721	9.5406	0	615	37	0.912521036363781	0.0243417287857135	0.912521036363781	552.587295619535	0	14.7404054749258						388	20	4	NaN	NaN	NaN	0.038344	1	25546	57.003	56.794	1	140940			16027	2688	13493	13886	16027	16027		
PTENSSAVLLQWHEK	15	Unmodified	_PTENSSAVLLQWHEK_			0	0	0	Q9BPX5	Q9BPX5	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.941576	1737.8686	1.6007	0.0013925	3.3822	0.0029423	4.9829	0.0043349	869.946752652914	9.4608	0.079793	9.4608	9.4342	9.514	0	201	40	1.18983705239708	0.0258746838681829	1.18983705239708	480.348274094913	0	10.4458503068077						223	10	3	NaN	NaN	NaN	3.8899E-06	1	25547	66.485	62.981	1	59967			16028	2688	13493	13886	16028	16028		
PTIVEEDDPELFK	13	Unmodified	_PTIVEEDDPELFK_			0	0	0	O75937	O75937	O75937	DNAJC8	DnaJ homolog subfamily C member 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.379954	1530.74536	1.4803	0.0011345	2.5631	0.0019643	4.0434	0.0030988	766.382019740401	12.112	0.10643	12.112	12.068	12.174	0	399	34	1.0578662689527	0.0220967798859319	1.0578662689527	427.527428065037	0	8.93022090826696						362	13	4	NaN	NaN	NaN	2.5627E-07	1	19460	97.175	89.617	1	128220			16029	371	13494	13887	16029	16029		
PTLENLTPVVLRPEIR	16	Unmodified	_PTLENLTPVVLRPEIR_			0	0	1	P55211	P55211	P55211	CASP9	Caspase-9;Caspase-9 subunit p35;Caspase-9 subunit p10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.363154	1846.06763	0.49398	0.00030447	-2.0518	-0.0012646	-1.5578	-0.00096017	616.69628360173	14.223	0.097546	14.223	14.178	14.276	0	615	37	0.912521036363781	0.0243417287857135	0.912521036363781	552.331228954354	0	14.7335748320512						244	12	4	NaN	NaN	NaN	0.00020395	1	28392	75.5	69.473	1	65069			16030	1271	13495	13888	16030	16030		
PTLMAAVPEIMDR	13	Unmodified	_PTLMAAVPEIMDR_			0	0	0	O60488;O95573	O60488;O95573	O60488	ACSL4;ACSL3	Long-chain-fatty-acid--CoA ligase 4;Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.370355	1442.72616	1.174	0.00084809	0.85212	0.00061554	2.0262	0.0014636	722.371157425659	15.322	0.26599	15.322	15.189	15.455	0	444	52	1.02770517576159	0.0342297995657299	1.02770517576159	415.565112730523	0	13.841236621908						705	31	5	NaN	NaN	NaN	0.00041851	1	16753	67.548	54.952	1	194160			16031	260;443	13496	13889	16031	16031		
PTLQLVYQAVQALYHDPDPSGK	22	Unmodified	_PTLQLVYQAVQALYHDPDPSGK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.088418	2439.24342	1.299	0.0010575	-2.0115	-0.0016375	-0.71244	-0.00057999	814.420162885564	19.472	0.10633	19.472	19.401	19.508	0	402	82	1.05585747106793	0.0542076750760496	1.05585747106793	637.930685324339	0	32.7513326927801						300	13	4	NaN	NaN	NaN	3.264E-08	1	36526	88.137	84.884	1	67262			16032	3437	13497	13890	16032	16032		
PTLQLVYQAVQALYHDPDPSGK	22	Unmodified	_PTLQLVYQAVQALYHDPDPSGK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.088418	2439.24342	0.90131	0.00073374	-0.15293	-0.0001245	0.74837	0.00060924	814.422132159368	19.463	0.062073	19.463	19.437	19.499	0	456	55	1.01965166402748	0.0362708643126453	1.01965166402748	616.055761117555	0	21.9142239539523						238	8	3	NaN	NaN	NaN	0.00079338	1	36527	31.381	31.076	1	48162			16033	3437	13497	13890	16033	16033		
PTLVILR	7	Unmodified	_PTLVILR_			0	0	0	O15143;Q92747	O15143;Q92747	O15143	ARPC1B;ARPC1A	Actin-related protein 2/3 complex subunit 1B;Actin-related protein 2/3 complex subunit 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.273638	810.532724	-2.1371	-0.00086823	-0.92481	-0.00037573	-3.0619	-0.001244	406.273145213525	10.161	0.079796	10.161	10.117	10.197	0	804	37	0.78414869089473	0.0245557049471467	0.78414869089473	319.417728914617	0	10.0026023089644						177	10	2	NaN	NaN	NaN	0.041853	1	1100	42.229	18.92	1	41176			16034	147;2430	13498	13891	16034	16034		
PTPALSEEASSSSIR	15	Unmodified	_PTPALSEEASSSSIR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.383559	1530.75257	2.4311	0.0018631	-4.6726	-0.003581	-2.2415	-0.0017179	766.881072070218	6.5781	0.23055	6.5781	6.5072	6.7377	0	432	76	1.035754240522	0.0502685125885778	1.035754240522	418.591054099453	0	20.3155814856811						867	27	5	NaN	NaN	NaN	0.00016465	1	19459	78.157	68.895	1	360560			16035	1915	13499	13892	16035	16035		
PTPFLCLTLK	10	Unmodified	_PTPFLCLTLK_			0	0	0	Q8NAV1	Q8NAV1	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.33611	1188.65767	0.2071	0.0001233	-2.7935	-0.0016631	-2.5864	-0.0015398	595.334415572412	15.109	0.19507	15.109	15.056	15.251	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.380883734772	0	10.6839921259514						315	23	3	NaN	NaN	NaN	0.041901	1	9129	51.872	45.182	1	82196			16036	2280	13500	13893	16036	16036		
PTTALLDK	8	Unmodified	_PTTALLDK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.750193	857.485833	-0.45171	-0.00019412	-1.9356	-0.00083181	-2.3873	-0.0010259	429.749478997957	4.9731	0.15072	4.9731	4.9287	5.0795	0	813	31	0.778007628350577	0.0204716360591192	0.778007628350577	316.627592339463	0	8.33138982247596						261	18	3	NaN	NaN	NaN	0.014657	1	1673	53.878	34.391	1	120330			16037	1606	13501	13894	16037	16037		
PTTQQSPQDEQEK	13	Unmodified	_PTTQQSPQDEQEK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.349716	1514.68488	1.5493	0.0011749	-0.47651	-0.00036136	1.0728	0.00081357	758.349382047826	1.7275	0.1153	1.7275	1.7009	1.8162	0	507	22	0.985374541851584	0.0141316768501546	0.985374541851584	398.268381099996	0	5.71173682929088						103	14	2	NaN	NaN	NaN	2.0405E-07	1	18953	140.57	110.22	1	19194			16038	2605	13502	13895	16038	16038		
PTVASQNQNLPVAK	14	Unmodified	_PTVASQNQNLPVAK_			0	0	0	Q13492	Q13492	Q13492	PICALM	Phosphatidylinositol-binding clathrin assembly protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.901722	1465.78889	1.4246	0.0010455	-0.25944	-0.0001904	1.1652	0.00085512	733.901555885679	5.4342	0.088668	5.4342	5.3987	5.4873	0	474	40	1.00756305028564	0.0262010489671465	1.00756305028564	407.359516229243	0	10.5931302551534						261	11	3	NaN	NaN	NaN	0.012181	1	17461	44.598	26.867	1	72692			16039	1672	13503	13896	16039	16039		
PTVNEHDLLK	10	Unmodified	_PTVNEHDLLK_			0	0	0	O75351	O75351	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.211906	1164.61389	-0.87772	-0.00034162	-1.3672	-0.00053214	-2.2449	-0.00087376	389.211325333884	5.7002	0.11527	5.7002	5.6736	5.7889	0	873	25	0.737001551771189	0.016425306665147	0.737001551771189	448.031171207875	0	9.98512060788579						120	14	3	NaN	NaN	NaN	0.0616	1	8467	25.857	17.674	1	28125			16040	322	13504	13897	16040	16040		
PTVQQLQILWK	11	Unmodified	_PTVQQLQILWK_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.398087	1352.78162	0.46815	0.00031713	-0.031709	-2.148E-05	0.43645	0.00029565	677.398185854018	14.764	0.11528	14.764	14.719	14.834	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	406.86196250155	0	8.15661360967812						201	14	2	NaN	NaN	NaN	3.6984E-05	1	13989	99.34	91.783	1	99785			16041	3330	13505	13898	16041	16041		
PVAIQTYPILGEK	13	Unmodified	_PVAIQTYPILGEK_			0	0	0	Q8TED0	Q8TED0	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.908485	1427.80242	1.7573	0.0012563	-0.49632	-0.00035482	1.261	0.0009015	714.908385270124	12.378	0.16847	12.378	12.298	12.467	0	414	37	1.04781950764076	0.0241205492413457	1.04781950764076	423.740650418343	0	9.75440631658836						472	20	4	NaN	NaN	NaN	0.00019391	1	16338	78.864	73.713	1	172910			16042	2352	13506	13899	16042	16042		
PVANHQYNIEYER	13	Unmodified	_PVANHQYNIEYER_			0	0	0	P13984	P13984	P13984	GTF2F2	General transcription factor IIF subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.930349	1631.76922	0.37209	0.00020276	1.0841	0.00059077	1.4562	0.00079353	544.93095278826	5.1149	0.070938	5.1149	5.0795	5.1504	0	744	34	0.82502364452135	0.0224515301209383	0.82502364452135	499.858967563979	0	13.6027600433134						171	9	4	NaN	NaN	NaN	1.3003E-05	1	22540	110.52	101.26	1	45483			16043	689	13507	13900	16043	16043		
PVASDSTYFAWCPDGEHILTATCAPR	26	Unmodified	_PVASDSTYFAWCPDGEHILTATCAPR_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	974.777697	2921.31126	1.3851	0.0013502	0.67871	0.00066159	2.0638	0.0020117	975.11235545336	14.914	0.062053	14.914	14.888	14.95	0	423	43	1.04178812298108	0.0281561811759454	1.04178812298108	628.84161894101	0	16.9955657616952						289	8	5	NaN	NaN	NaN	0.007831	1	38103	14.852	14.834	1	51136			16044	2796	13508	13901	16044	16044		
PVAVALDTK	9	Unmodified	_PVAVALDTK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.271293	912.528032	-0.63329	-0.00028958	-0.0028123	-1.286E-06	-0.6361	-0.00029087	457.271384175543	5.8421	0.24832	5.8421	5.7978	6.0461	0	750	40	0.820941264895493	0.0265410084545386	0.820941264895493	333.782890772068	0	10.7911916537531						441	29	3	NaN	NaN	NaN	0.00060709	1	2552	91.783	69.396	1	291810			16045	699	13509	13902	16045	16045		
PVAVGPYGQSQPSCFDR	17	Unmodified	_PVAVGPYGQSQPSCFDR_			0	0	0	P60602	P60602	P60602	ROMO1	Reactive oxygen species modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.935967	1863.85738	2.3064	0.0021517	-1.4357	-0.0013394	0.87066	0.00081227	933.436756222531	8.6712	0.18641	8.6712	8.6002	8.7866	0	309	43	1.11800162319566	0.0280090817466732	1.11800162319566	451.106138857651	0	11.3014761853157						644	22	4	NaN	NaN	NaN	1.1423E-06	1	28779	72.327	68.591	1	166760			16046	1307	13510	13903	16046	16046		
PVAVSELFTTLPIVQGK	17	Unmodified	_PVAVSELFTTLPIVQGK_			0	0	0	P78346	P78346	P78346	RPP30	Ribonuclease P protein subunit p30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.019295	1798.02404	1.3073	0.0011766	-1.1906	-0.0010715	0.11674	0.00010506	900.018485195964	18.931	0.1153	18.931	18.869	18.984	0	285	64	1.13399579921816	0.0419702899693128	1.13399579921816	457.683427843745	0	16.939309822836						469	14	3	NaN	NaN	NaN	0.00021456	1	27180	46.358	36.337	1	123850			16047	1458	13511	13904	16047	16047		
PVDATDPAALIAEALK	16	Unmodified	_PVDATDPAALIAEALK_			0	0	0	Q15390	Q15390	Q15390	MTFR1	Mitochondrial fission regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.93797	1593.86139	0.75227	0.00060027	2.1728	0.0017338	2.9251	0.002334	797.939768041376	19.064	0.079801	19.064	19.029	19.109	0	351	28	1.08996939197032	0.018041831774515	1.08996939197032	440.345254386557	0	7.28886064221206						115	10	3	NaN	NaN	NaN	0.0037769	1	21406	39.166	38.203	1	19897			16048	1839	13512	13905	16048	16048		
PVDENHQQDGDEDSLVSHFYTNPIAK	26	Unmodified	_PVDENHQQDGDEDSLVSHFYTNPIAK_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	739.590241	2954.33186	0.81807	0.00060503	4.537	0.0033556	5.3551	0.0039606	739.846252882725	11.846	0.15959	11.846	11.758	11.917	0	459	58	1.01763759082241	0.0382568380923556	1.01763759082241	818.973868093922	0	30.7883189026252						361	19	3	NaN	NaN	NaN	6.0062E-19	1	38152	132.61	132.17	1	141700			16049	1227	13513	13906	16049	16049		
PVDLQNFGLR	10	Unmodified	_PVDLQNFGLR_			0	0	0	Q92922	Q92922	Q92922	SMARCC1	SWI/SNF complex subunit SMARCC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.81693	1157.61931	0.41125	0.00023845	-7.7339	-0.0044843	-7.3227	-0.0042458	580.31320218948	12.724	0.21284	12.724	12.662	12.875	0	624	52	0.906433495720521	0.0345152137235557	0.906433495720521	367.383503310607	0	13.9892448758137						503	25	3	NaN	NaN	NaN	0.001772	1	8290	65.156	51.161	1	153880			16050	2445	13514	13907	16050	16050		
PVDPDEVPDYVTVIK	15	Unmodified	_PVDPDEVPDYVTVIK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.435261	1684.85597	1.7675	0.0014908	1.7334	0.001462	3.501	0.0029528	843.436563075476	13.673	0.13302	13.673	13.584	13.717	0	285	34	1.13399579921816	0.0219783806996243	1.13399579921816	457.918620286935	0	8.87508558060961						301	16	4	NaN	NaN	NaN	0.0051135	1	24053	39.702	35.456	1	77598			16051	2080	13515	13908	16051	16051		
PVDVEALGLHDYCDIIK	17	Unmodified	_PVDVEALGLHDYCDIIK_			0	0	0	O60885	O60885	O60885	BRD4	Bromodomain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.996031	1955.96626	0.38177	0.0002493	1.0314	0.00067352	1.4132	0.00092282	653.331355269807	14.746	0.088662	14.746	14.71	14.799	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	604.723622625683	0	13.4227934327396						289	11	5	NaN	NaN	NaN	0.045712	1	30819	14.393	10.087	1	91227			16052	292	13516	13909	16052	16052		
PVDVGGDEPEEK	12	Unmodified	_PVDVGGDEPEEK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.793514	1269.57248	3.0089	0.001913	-2.0674	-0.0013144	0.9415	0.0005986	635.791931156529	3.8914	0.19506	3.8914	3.8115	4.0066	0	564	40	0.946969335010767	0.0263172834355764	0.946969335010767	383.414186598582	0	10.6554874047965						351	23	3	NaN	NaN	NaN	0.00033037	1	11489	103.69	93.598	1	84231			16053	1126	13517	13910	16053	16053		
PVEAPAANSDQTVTVK	16	Unmodified	_PVEAPAANSDQTVTVK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.920309	1625.82606	3.4064	0.0027725	-1.3554	-0.0011032	2.051	0.0016693	813.919491016782	5.6292	0.31925	5.6292	5.4962	5.8155	0	375	73	1.07392668217569	0.0481812689892422	1.07392668217569	433.790557758391	0	19.4618309566605						1232	37	5	NaN	NaN	NaN	0.00011191	1	22361	81.578	70.095	1	651320			16054	1468	13518	13911	16054	16054		
PVETIGFDSIMK	12	Unmodified	_PVETIGFDSIMK_			0	0	0	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.844496	1335.67444	0.49396	0.00033039	-0.80822	-0.00054057	-0.31425	-0.00021019	668.843876169917	13.708	0.1064	13.708	13.682	13.788	0	513	34	0.981336640919867	0.0222099939443385	0.981336640919867	397.117340084119	0	8.98771466455446						178	13	4	NaN	NaN	NaN	0.020875	1	13462	50.09	44.594	1	46366			16055	1870	13519	13912	16055	16055		
PVFVTEITDDLHFYVQDVETGTQLEK	26	Unmodified	_PVFVTEITDDLHFYVQDVETGTQLEK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1008.50099	3022.48115	1.0915	0.0011008	0.68697	0.00069281	1.7785	0.0017936	1008.83653901942	19.951	0.026599	19.951	19.942	19.969	0	363	43	1.08195024817156	0.0280747465403823	1.08195024817156	652.980567787383	0	16.9437217352705						181	4	5	NaN	NaN	NaN	0.00054818	1	38262	21.668	20.709	1	39758			16056	2108	13520	13913	16056	16056		
PVHLTAFLGYK	11	Unmodified	_PVHLTAFLGYK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.904524	1244.69174	-1.2271	-0.00051034	-0.41277	-0.00017167	-1.6398	-0.00068202	415.904458429384	11.58	0.44343	11.58	11.527	11.97	0	738	40	0.829104889055312	0.0265225632029411	0.829104889055312	503.642684954111	0	16.1112244297757						870	51	5	NaN	NaN	NaN	0.0032057	1	10776	60.589	53.899	1	544290			16057	1010	13521	13914	16057	16057		
PVIAAVHGGCIGGGVDLVTACDIR	24	Unmodified	_PVIAAVHGGCIGGGVDLVTACDIR_			0	0	0	Q13011	Q13011	Q13011	ECH1	Delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.078871	2406.21478	1.5803	0.0012691	0.76398	0.00061353	2.3443	0.0018826	803.414125641567	13.123	0.088683	13.123	13.096	13.185	0	312	34	1.11600111266355	0.0220116788084446	1.11600111266355	674.320825252082	0	13.3001062909951						302	11	5	NaN	NaN	NaN	4.9911E-07	1	36379	74.733	72.492	1	70365			16058	1618	13522	13915	16058	16058		
PVICATQMLESMIK	14	Unmodified	_PVICATQMLESMIK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.91153	1619.80851	2.3197	0.0018811	0.78608	0.00063744	3.1058	0.0025185	810.912806651079	18.098	0.50548	18.098	18.018	18.523	0	333	139	1.10198982404297	0.0920934285364927	1.10198982404297	445.140048009447	0	37.2004099363539						2876	58	7	NaN	NaN	NaN	7.1516E-08	1	22185	140.01	85.81	1	4182200			16059	699	13523	13916	16059	16059		
PVICATQMLESMIK	14	Oxidation (M)	_PVICATQM(Oxidation (M))LESMIK_	PVICATQM(0.999)LESM(0.001)IK	PVICATQM(33)LESM(-33)IK	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.908987	1635.80342	2.2164	0.001815	-0.11941	-9.7783E-05	2.097	0.0017172	819.411629838211	14.32	0.2128	14.32	14.232	14.444	0	324	61	1.1079963157843	0.0400240026056418	1.1079963157843	447.529216508059	0	16.1660379844679						1130	25	5	NaN	NaN	NaN	0.0011763	1	22663	94.791	84.541	2	400610			16060	699	13523	13917	16060	16060	227;228	
PVICATQMLESMIK	14	Oxidation (M)	_PVICATQMLESM(Oxidation (M))IK_	PVICATQM(0.001)LESM(0.999)IK	PVICATQM(-32)LESM(32)IK	0	1	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.908987	1635.80342	2.4221	0.0019835	0.84065	0.00068841	3.2628	0.0026719	818.909895630011	13.531	0.15073	13.531	13.496	13.646	0	312	46	1.11600111266355	0.0300159293461491	1.11600111266355	450.762418995257	0	12.1236912463007						687	18	5	NaN	NaN	NaN	3.7526E-07	1	22664	95.138	91.155	2	233730			16061	699	13523	13917	16061	16061	227;228	
PVICATQMLESMIK	14	2 Oxidation (M)	_PVICATQM(Oxidation (M))LESM(Oxidation (M))IK_	PVICATQM(1)LESM(1)IK	PVICATQM(60)LESM(60)IK	0	2	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.906444	1651.79834	3.0428	0.0025161	-6.4352	-0.0053213	-3.3924	-0.0028052	826.899332589692	10.826	0.38129	10.826	10.578	10.959	0	339	76	1.09798411722691	0.0501231385671799	1.09798411722691	443.449161015682	0	20.2435202808086						1031	44	3	NaN	NaN	NaN	0.011277	1	23100	59.731	47.713	1	341010			16062	699	13523	13918	16062	16062	227;228	
PVIFLDVFLPR	11	Unmodified	_PVIFLDVFLPR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.392273	1314.76999	-0.13124	-8.6405E-05	-6.7649	-0.0044539	-6.8961	-0.0045403	658.387185688697	20.013	0.035482	20.013	19.986	20.022	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.182017552108	0	8.99042178040941						107	5	3	NaN	NaN	NaN	0.052297	1	12810	24.821	16.82	1	20596			16063	1465	13524	13919	16063	16063		
PVIGSQYPLEK	11	Unmodified	_PVIGSQYPLEK_			0	0	0	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.840071	1229.66559	1.6551	0.0010193	-0.085263	-5.2508E-05	1.5698	0.00096677	615.840169968179	8.3076	0.20405	8.3076	8.2366	8.4406	0	543	40	0.961130371139249	0.0262845144362098	0.961130371139249	389.283644202681	0	10.6459351125253						475	24	4	NaN	NaN	NaN	0.00028375	1	10302	103.87	79.052	1	182690			16064	1576	13525	13920	16064	16064		
PVILLFR	7	Unmodified	_PVILLFR_			0	0	0	Q9NRG9	Q9NRG9	Q9NRG9	AAAS	Aladin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.284006	856.553459	-2.1557	-0.00092539	-0.64834	-0.00027832	-2.804	-0.0012037	429.283725091333	14.427	0.14189	14.427	14.382	14.524	1.7764E-15	798	55	0.788241307691771	0.0368079377727304	0.788241307691771	320.797908246046	0	14.9800693380558						364	17	3	NaN	NaN	NaN	0.0056488	1	1661	84.185	28.728	1	101910			16065	3020	13526	13921	16065	16065		
PVIVEPLEQLDDEDGLPEK	19	Unmodified	_PVIVEPLEQLDDEDGLPEK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.363325	2134.06815	1.4895	0.0010611	-1.7236	-0.0012279	-0.23413	-0.00016679	712.696412785367	15.508	0.12425	15.508	15.455	15.579	0	525	46	0.973257487423603	0.0303115059679868	0.973257487423603	588.501137353325	0	18.3285060403427						534	15	4	NaN	NaN	NaN	0.00074809	1	33802	90.156	83.634	1	159470			16066	814	13527	13922	16066	16066		
PVIVEPLEQLDDEDGLPEK	19	Unmodified	_PVIVEPLEQLDDEDGLPEK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.04135	2134.06815	2.0007	0.0021368	0.12865	0.0001374	2.1293	0.0022742	1068.54326443075	15.5	0.23955	15.5	15.375	15.615	0	150	142	1.22363604450103	0.0932779961353054	1.22363604450103	493.266787978908	0	37.6018161197053						2201	28	5	NaN	NaN	NaN	1.6083E-07	1	33803	85.742	74.533	1	880610			16067	814	13527	13922	16067	16067		
PVLDSYVFNDGSSR	14	Unmodified	_PVLDSYVFNDGSSR_			0	0	0	Q99816	Q99816	Q99816	TSG101	Tumor susceptibility gene 101 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.372995	1554.73144	1.1921	0.00092791	0.65904	0.00051298	1.8512	0.0014409	778.373758090601	11.722	0.15073	11.722	11.66	11.811	0	417	40	1.04580932352505	0.0261323987291064	1.04580932352505	422.59628016695	0	10.559720827059						343	18	4	NaN	NaN	NaN	3.5478E-05	1	20193	86.243	81.414	1	83354			16068	2677	13528	13923	16068	16068		
PVLDVHAELDR	11	Unmodified	_PVLDVHAELDR_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.894577	1262.6619	-0.99556	-0.00042002	0.32521	0.0001372	-0.67035	-0.00028282	421.894764691555	8.485	0.12416	8.485	8.4406	8.5648	0	738	31	0.829104889055312	0.020406225036543	0.829104889055312	503.564164362439	0	12.3939006921393						179	15	3	NaN	NaN	NaN	0.060074	1	11302	19.324	16.221	1	35529			16069	3465	13529	13924	16069	16069		
PVLEDLR	7	Unmodified	_PVLEDLR_			0	0	0	CON__P15497	CON__P15497	CON__P15497			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	421.242535	840.470518	-1.2499	-0.00052653	-1.1192	-0.00047143	-2.3691	-0.00099796	421.242298395216	7.3496	0.133	7.3496	7.2875	7.4205	0	780	37	0.800512323802183	0.024531790781615	0.800512323802183	325.890202105853	0	9.98694213459055						287	16	3	NaN	NaN	NaN	0.028605	1	1437	66.087	28.479	1	79502		+	16070	30	13530	13925	16070	16070		
PVLEEQVIK	9	Unmodified	_PVLEEQVIK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.810782	1053.60701	0.26445	0.00013958	0.030402	1.6046E-05	0.29485	0.00015562	527.810652599751	7.8729	0.088662	7.8729	7.8374	7.9261	0	693	40	0.85967808974117	0.0264673426716941	0.85967808974117	348.837857257441	0	10.7398469439555						202	11	3	NaN	NaN	NaN	0.00087654	1	5565	67.507	44.454	1	59135			16071	2167	13531	13926	16071	16071		
PVLMMNK	7	Unmodified	_PVLMMNK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.72461	831.434666	-0.43932	-0.00018307	-2.4215	-0.0010091	-2.8608	-0.0011922	416.724013989941	5.9929	0.36366	5.9929	5.913	6.2767	0	828	88	0.767766820543916	0.059396744050578	0.767766820543916	312.613967103322	0	24.1847541386554						1165	42	4	NaN	NaN	NaN	0.0033277	1	1332	112.95	79.98	1	632400			16072	679	13532	13927	16072	16072		
PVLNFYEANFPANVMDVIAR	20	Unmodified	_PVLNFYEANFPANVMDVIAR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1140.57771	2279.14087	0.0029132	3.3228E-06	0.12474	0.00014228	0.12766	0.0001456	1141.07911297762	19.978	0.10641	19.978	19.951	20.057	0	63	49	1.28111162701928	0.0316650717164555	1.28111162701928	516.223476290494	0	12.7594294312111						347	13	5	NaN	NaN	NaN	0.045134	1	35458	38.668	37.652	1	61967			16073	743	13533	13928	16073	16073		
PVLVLSQNTK	10	Unmodified	_PVLVLSQNTK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.829506	1097.64446	0.58903	0.00032387	-1.5752	-0.00086609	-0.98617	-0.00054223	549.82884931394	7.2964	0.10642	7.2964	7.2521	7.3585	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	367.619709402464	0	6.58512159547547						136	13	3	NaN	NaN	NaN	0.018463	1	6655	57.032	40.575	1	38605			16074	1129	13534	13929	16074	16074		
PVMEQYGLIPEEDICFIK	18	Unmodified	_PVMEQYGLIPEEDICFIK_			0	0	0	Q9Y3Z3	Q9Y3Z3	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.03396	2180.05336	0.68012	0.00074204	0.93826	0.0010237	1.6184	0.0017657	1091.53656538392	17.743	0.11526	17.743	17.69	17.805	0	105	58	1.25339330680955	0.0376667162898454	1.25339330680955	505.193480597714	0	15.181969938543						479	14	4	NaN	NaN	NaN	0.0032906	1	34454	17.807	15.959	1	93076			16075	3402	13535	13930	16075	16075		
PVNAIIEHVR	10	Unmodified	_PVNAIIEHVR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	383.224257	1146.65094	-1.2166	-0.00046624	0.62363	0.00023899	-0.59298	-0.00022725	383.224688240454	6.321	0.35473	6.321	6.1968	6.5515	0	852	43	0.751366682244005	0.0287122487559326	0.751366682244005	456.84747421061	0	17.4576789642567						658	41	4	NaN	NaN	NaN	5.1918E-05	1	7981	81.642	43.92	1	435350			16076	2108	13536	13931	16076	16076		
PVNCHQYDGLVELATICALCNDSALDYNEAK	31	Unmodified	_PVNCHQYDGLVELATICALCNDSALDYNEAK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1185.20593	3552.59595	1.4935	0.0017701	0.17145	0.00020321	1.665	0.0019733	1185.87418902243	17.912	0.062065	17.912	17.876	17.938	0	285	43	1.13399579921816	0.0279744112588804	1.13399579921816	683.922981485436	0	16.8716169554281						257	8	5	NaN	NaN	NaN	0.031101	1	38670	9.3806	9.3709	1	37916			16077	730	13537	13932	16077	16077		
PVNLGLWDTAGQEDYDR	17	Unmodified	_PVNLGLWDTAGQEDYDR_			0	0	0	P63000;P15153;P60763	P63000	P63000	RAC1;RAC2;RAC3	Ras-related C3 botulinum toxin substrate 1;Ras-related C3 botulinum toxin substrate 2;Ras-related C3 botulinum toxin substrate 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.955411	1947.89627	2.1943	0.0021393	-0.53576	-0.00052234	1.6585	0.001617	975.45593634333	14.072	0.22167	14.072	14.01	14.232	-1.7764E-15	255	64	1.15396378101328	0.0419068387671679	1.15396378101328	465.46818648775	0	16.9037369832008						656	26	4	NaN	NaN	NaN	1.0695E-13	1	30672	113.86	110.01	1	386610			16078	1422	13538	13933	16078	16078		
PVNPVFCMPEEVLQR	15	Unmodified	_PVNPVFCMPEEVLQR_			0	0	0	P53611	P53611	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.63578	1813.88551	-0.88817	-0.00053791	-0.82151	-0.00049754	-1.7097	-0.0010354	605.635081851825	16.227	0.12413	16.227	16.156	16.28	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	530.270261409498	0	12.3120063735544						325	15	4	NaN	NaN	NaN	0.00033597	1	27571	108.4	95.226	1	65709			16079	1239	13539	13934	16079	16079		
PVPAAPVPSPVAPAPVPSR	19	Unmodified	_PVPAAPVPSPVAPAPVPSR_			0	0	0	Q9UK76	Q9UK76	Q9UK76	HN1	Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.517254	1805.01995	2.4576	0.0022205	-0.61863	-0.00055895	1.839	0.0016616	904.018068333624	10.826	0.12416	10.826	10.755	10.879	0	270	70	1.14398322290989	0.0459105946207727	1.14398322290989	461.700677632316	0	18.5290764955413						659	15	3	NaN	NaN	NaN	5.7939E-05	1	27360	39.82	38.725	1	154520			16080	3257	13540	13935	16080	16080		
PVPESGDGERVPEQK	15	Unmodified	_PVPESGDGERVPEQK_			0	0	1	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.937281	1622.79001	0.36748	0.00019915	1.9876	0.0010772	2.3551	0.0012763	541.938588549735	3.3947	0.12424	3.3947	3.3415	3.4657	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	502.355045819962	0	13.5996105104901						257	15	3	NaN	NaN	NaN	0.015178	1	22268	47.361	45.859	1	60391			16081	1072	13541	13936	16081	16081		
PVPLELHIQGFNISHTQTR	19	Unmodified	_PVPLELHIQGFNISHTQTR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	547.547185	2186.15964	0.77275	0.00042312	0.44376	0.00024298	1.2165	0.0006661	547.798163373481	12.751	0.079829	12.751	12.724	12.804	0	600	31	0.922661313351899	0.0202791503902223	0.922661313351899	743.759402222636	0	16.3470696706911						191	10	4	NaN	NaN	NaN	0.00054914	1	34537	53.051	43.895	1	40171			16082	350	13542	13937	16082	16082		
PVPQVDEAETR	11	Unmodified	_PVPQVDEAETR_			0	0	0	Q9NQZ2	Q9NQZ2	Q9NQZ2	UTP3	Something about silencing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.812042	1239.60953	2.1912	0.0013603	-0.48455	-0.00030081	1.7066	0.0010595	620.811394547784	4.9553	0.11527	4.9553	4.9021	5.0174	0	549	46	0.957085760909907	0.0303450838148018	0.957085760909907	387.610948209921	0	12.2894804116432						281	14	3	NaN	NaN	NaN	0.0036512	1	10607	56.202	38.807	1	98219			16083	3007	13543	13938	16083	16083		
PVQASYFETLR	11	Unmodified	_PVQASYFETLR_			0	0	0	O95989	O95989	O95989	NUDT3	Diphosphoinositol polyphosphate phosphohydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.840602	1309.66665	1.2992	0.0008521	-0.53708	-0.00035224	0.76216	0.00049986	655.84055141957	10.738	0.14186	10.738	10.64	10.782	0	513	40	0.981336640919867	0.0262518066023084	0.981336640919867	397.198086612063	0	10.6254743966075						276	17	3	NaN	NaN	NaN	0.0065289	1	12644	45.939	22.886	1	84974			16084	465	13544	13939	16084	16084		
PVQDLIK	7	Unmodified	_PVQDLIK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.747453	811.480354	-1.468	-0.00059711	-0.38054	-0.00015478	-1.8486	-0.0007519	406.747360664783	6.6402	0.30148	6.6402	6.5781	6.8796	0	837	43	0.761618911097395	0.0286962475841472	0.761618911097395	310.234348686859	0	11.6889976723363						458	35	2	NaN	NaN	NaN	0.0090828	1	1107	72.492	40.365	1	324260			16085	611	13545	13940	16085	16085		
PVQFMDFEGK	10	Unmodified	_PVQFMDFEGK_			0	0	0	Q8WUX1	Q8WUX1	Q8WUX1	SLC38A5	Sodium-coupled neutral amino acid transporter 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.284074	1196.5536	-0.46463	-0.00027845	0.97448	0.00058399	0.50985	0.00030554	599.284578051994	11.97	0.14187	11.97	11.926	12.068	0	600	43	0.922661313351899	0.0283868792767229	0.922661313351899	373.817413393057	0	11.5009805136139						378	17	3	NaN	NaN	NaN	0.0075464	1	9336	61.48	49.413	1	116320			16086	2373	13546	13941	16086	16086		
PVSFLPQNK	9	Unmodified	_PVSFLPQNK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.290017	1028.56548	-0.1456	-7.5028E-05	-1.993	-0.001027	-2.1386	-0.001102	515.288851233727	8.1479	0.15972	8.1479	8.068	8.2277	0	720	37	0.841341816837976	0.0244636567629751	0.841341816837976	341.504630232039	0	9.92991420343515						208	19	2	NaN	NaN	NaN	0.010551	1	4958	62.88	56.65	1	43800			16087	351	13547	13942	16087	16087		
PVSPLLLASGMAR	13	Unmodified	_PVSPLLLASGMAR_			0	0	0	P12277;P06732	P12277	P12277	CKB;CKM	Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.376297	1310.73804	1.5022	0.000986	-0.52395	-0.00034391	0.97824	0.00064209	656.37605706373	14.586	0.31923	14.586	14.453	14.772	0	474	61	1.00756305028564	0.0403176730241901	1.00756305028564	407.809801533657	0	16.3185244135666						1107	37	5	NaN	NaN	NaN	4.3095E-11	1	12692	179.31	150	1	692020			16088	668	13548	13943	16088	16088		
PVSWADETDDLEGDVSTTWHSNDDDVYR	28	Unmodified	_PVSWADETDDLEGDVSTTWHSNDDDVYR_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1075.45695	3223.34902	1.4529	0.0015626	0.94894	0.0010205	2.4019	0.0025831	1076.1262602649	15.304	0.062057	15.304	15.278	15.34	0	384	136	1.06790610341098	0.0905209483896604	1.06790610341098	644.320533968192	0	54.6157622055345						612	8	4	NaN	NaN	NaN	0.013653	1	38476	17.378	17.378	1	118720			16089	824	13549	13944	16089	16089		
PVTDFFLQLVDAGK	14	Unmodified	_PVTDFFLQLVDAGK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.416674	1548.81879	1.5144	0.0011743	-0.34902	-0.00027064	1.1653	0.00090362	775.416423932071	19.889	0.10642	19.889	19.871	19.978	0	414	88	1.04781950764076	0.0582793123301095	1.04781950764076	423.42283728118	0	23.5506130604235						508	13	4	NaN	NaN	NaN	4.7216E-13	1	20011	184.43	135.27	1	414130			16090	1055	13550	13945	16090	16090		
PVTGNLRPEEALQALTIYEGK	21	Unmodified	_PVTGNLRPEEALQALTIYEGK_			0	0	1	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.081263	2298.22196	0.42022	0.00032234	-2.1249	-0.0016299	-1.7046	-0.0013076	767.414429582314	15.659	0.13298	15.659	15.571	15.704	0	576	37	0.938871150116794	0.0242979231728671	0.938871150116794	567.446655298012	0	14.6854818506418						352	16	4	NaN	NaN	NaN	0.0017006	1	35629	50.131	41.718	1	74749			16091	1737	13551	13946	16091	16091		
PVTGNLRPEEALQALTIYEGK	21	Unmodified	_PVTGNLRPEEALQALTIYEGK_			0	0	1	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.081263	2298.22196	1.5	0.0011506	-0.52913	-0.00040589	0.97084	0.00074471	767.415428447827	15.642	0.15075	15.642	15.544	15.695	0	417	58	1.04580932352505	0.0382040575606513	1.04580932352505	632.079276208895	0	23.0902445675137						634	18	5	NaN	NaN	NaN	7.1323E-06	1	35630	72.075	65.085	1	233170			16092	1737	13551	13946	16092	16092		
PVTLLASLFK	10	Unmodified	_PVTLLASLFK_			0	0	0	Q96Q11	Q96Q11	Q96Q11	TRNT1	CCA tRNA nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.839342	1087.66413	-1.1194	-0.0006099	-1.1477	-0.00062531	-2.2671	-0.0012352	544.839239160812	17.947	0.070939	17.947	17.92	17.991	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	357.774495793999	0	6.59684247913879						135	9	3	NaN	NaN	NaN	0.0054641	1	6424	61.48	45.023	1	28171			16093	2602	13552	13947	16093	16093		
PVVAEFHGTK	10	Unmodified	_PVVAEFHGTK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	362.197708	1083.57129	0.50489	0.00018287	-1.9793	-0.0007169	-1.4744	-0.00053403	362.197028867452	3.9888	0.20396	3.9888	3.9445	4.1484	0	900	37	0.718511479433384	0.0246689155256227	0.718511479433384	437.172332966737	0	15.0095964515424						439	24	4	NaN	NaN	NaN	0.0038726	1	6303	52.591	39.764	1	131770		+	16094	37	13553	13948	16094	16094		
PVVAEFHGTK	10	Unmodified	_PVVAEFHGTK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.792924	1083.57129	2.0646	0.0011206	-0.54225	-0.00029433	1.5223	0.00082631	542.792960640659	3.98	0.14187	3.98	3.9356	4.0775	-4.4409E-16	618	25	0.910492137470517	0.0162323175227004	0.910492137470517	369.325211207003	0	6.58435570251658						176	17	3	NaN	NaN	NaN	0.0088308	1	6305	67.881	62.974	1	35192		+	16095	37	13553	13948	16095	16095		
PVVSTEAPPIIFATPTK	17	Unmodified	_PVVSTEAPPIIFATPTK_			0	0	0	O14548	O14548	O14548	COX7A2L	Cytochrome c oxidase subunit 7A-related protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.498195	1766.98184	2.5342	0.0022415	-0.68385	-0.00060486	1.8504	0.0016367	884.497744057357	14.32	0.18619	14.32	14.232	14.418	0	291	40	1.12999890578964	0.0259851749816993	1.12999890578964	456.131586550029	0	10.4890889986304						551	22	4	NaN	NaN	NaN	2.6695E-05	1	26330	56.938	44.767	1	179070			16096	103	13554	13949	16096	16096		
PVVTISDEPDILYK	14	Unmodified	_PVVTISDEPDILYK_			0	0	0	P82664	P82664	P82664	MRPS10	28S ribosomal protein S10, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.927071	1587.83959	1.9191	0.0015256	2.7003	0.0021465	4.6195	0.0036721	794.928988646264	13.371	0.19511	13.371	13.283	13.478	0	324	76	1.1079963157843	0.0500403506587732	1.1079963157843	447.642713912518	0	20.2168527592723						609	23	4	NaN	NaN	NaN	1.5803E-08	1	21210	122.51	106.22	1	151110			16097	1471	13555	13950	16097	16097		
PVWQLSEK	8	Unmodified	_PVWQLSEK_			0	0	0	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.768917	985.523281	0.16222	8.0102E-05	-1.0537	-0.00052026	-0.89143	-0.00044016	493.768161446438	8.3076	0.2484	8.3076	8.2011	8.4495	0	696	52	0.857641857947968	0.0346351908401327	0.857641857947968	348.321592291925	0	14.0666931201738						351	29	3	NaN	NaN	NaN	0.014717	1	3963	56.014	22.201	1	67954			16098	1227	13556	13951	16098	16098		
PVWYSPK	7	Unmodified	_PVWYSPK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	438.734346	875.454139	-1.7952	-0.00078762	0.99172	0.0004351	-0.80349	-0.00035252	438.734743114861	6.9328	0.33702	6.9328	6.7909	7.128	0	765	82	0.810730346695089	0.0552080917813754	0.810730346695089	329.838171986051	0	22.4609034881182						1168	39	3	NaN	NaN	NaN	0.0056054	1	1943	88.35	66.422	1	401750			16099	565	13557	13952	16099	16099		
PVYHALSDCGDHVVIMNTR	19	Unmodified	_PVYHALSDCGDHVVIMNTR_			0	0	0	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.682341	2183.02519	0.86801	0.0006325	0.31598	0.00023025	1.184	0.00086275	729.017110148034	8.3164	0.062076	8.3164	8.281	8.343	0	588	25	0.93076847747433	0.01621208273842	0.93076847747433	562.727686858504	0	9.80156509307801						107	8	4	NaN	NaN	NaN	0.0256	1	34492	16.675	16.24	1	18435			16100	2797	13558	13953	16100	16100		
PVYHALSDCGDHVVIMNTR	19	Unmodified	_PVYHALSDCGDHVVIMNTR_			0	0	0	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	546.763575	2183.02519	0.85634	0.00046822	0.82433	0.00045071	1.6807	0.00091893	547.014583979789	8.3164	0.071	8.3164	8.281	8.352	0	612	22	0.914549654013882	0.0142003243693484	0.914549654013882	737.227244852763	0	11.4470176276197						152	9	4	NaN	NaN	NaN	0.0599	1	34493	7.3112	6.6348	1	38617			16101	2797	13558	13953	16101	16101		
PVYIPEVELNHK	12	Unmodified	_PVYIPEVELNHK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.929398	1436.76637	-0.64153	-0.00030789	-0.22378	-0.0001074	-0.86532	-0.00041529	479.929202206004	10.223	0.24828	10.223	10.09	10.339	0	738	40	0.829104889055312	0.0265225632029411	0.829104889055312	502.904455936191	0	16.0876089306458						497	29	4	NaN	NaN	NaN	0.024878	1	16596	37.591	36.334	1	189520			16102	1745	13559	13954	16102	16102		
PVYPGQTLQTEMWK	14	Unmodified	_PVYPGQTLQTEMWK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.418891	1676.82323	2.3597	0.0019808	-0.68289	-0.00057323	1.6769	0.0014076	839.418342658744	12.591	0.16847	12.591	12.502	12.671	0	348	70	1.09197348738011	0.0460878729529839	1.09197348738011	440.966839570083	0	18.6114625615542						1109	20	5	NaN	NaN	NaN	1.4552E-05	1	23812	104.04	86.627	1	440240			16103	1195	13560	13955	16103	16103		
PVYVFDGKPPQLK	13	Unmodified	_PVYVFDGKPPQLK_			0	0	1	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.416477	1486.8184	1.5561	0.0011584	0.63945	0.00047602	2.1955	0.0016344	744.417184418711	10.214	0.23941	10.214	10.046	10.285	0	375	31	1.07392668217569	0.0200699816330834	1.07392668217569	434.133014474487	0	8.11325556151206						376	28	3	NaN	NaN	NaN	0.00051573	1	18147	72.922	68.394	1	80765			16104	1013	13561	13956	16104	16104		
PWALTFSYGR	10	Unmodified	_PWALTFSYGR_			0	0	0	P04075;P09972	P04075;P09972	P04075	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.306198	1196.59784	0.79632	0.00047724	-0.21298	-0.00012764	0.58335	0.0003496	599.305989519718	14.347	0.22167	14.347	14.285	14.506	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.384694333948	0	9.84569421309868						502	26	4	NaN	NaN	NaN	1.1416E-07	1	9352	163.2	141.93	1	262980			16105	504;615	13562	13957	16105	16105		
PWDDETDMAK	10	Unmodified	_PWDDETDMAK_			0	0	0	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.250428	1206.4863	1.1826	0.00071461	1.301	0.00078612	2.4836	0.0015007	604.251232263719	6.3033	0.15963	6.3033	6.2589	6.4185	0	582	40	0.934820374997243	0.0263391634913087	0.934820374997243	378.708122555286	0	10.670344188315						467	19	4	NaN	NaN	NaN	1.9281E-05	1	9633	85.716	76.953	1	238550			16106	829	13563	13958	16106	16106		
PWDDETDMAK	10	Oxidation (M)	_PWDDETDM(Oxidation (M))AK_	PWDDETDM(1)AK	PWDDETDM(43)AK	0	1	0	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.247886	1222.48122	1.7477	0.00107	0.94374	0.0005778	2.6915	0.0016478	612.248059295051	4.1839	0.097534	4.1839	4.1573	4.2549	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.369160341041	0	8.20958491861967						199	12	3	NaN	NaN	NaN	0.047803	1	10080	43.272	41.113	1	44465			16107	829	13563	13959	16107	16107	279	
PWFEVGDENSGWSAQK	16	Unmodified	_PWFEVGDENSGWSAQK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.913015	1835.81148	2.5101	0.0023065	1.3804	0.0012685	3.8905	0.003575	919.417015201768	13.54	0.070948	13.54	13.504	13.575	0	321	31	1.10999792833052	0.0200147497946634	1.10999792833052	447.927237733456	0	8.07672821780284						130	9	3	NaN	NaN	NaN	0.00050405	1	28119	42.941	42.322	1	22335			16108	280	13564	13960	16108	16108		
PWIGLAEALGTLMR	14	Unmodified	_PWIGLAEALGTLMR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.421236	1526.82792	1.0925	0.00083517	-1.2854	-0.00098256	-0.19282	-0.0001474	764.420286409357	20.093	0.053186	20.093	20.084	20.137	0	393	37	1.0618830335572	0.0241005916389636	1.0618830335572	429.160651534994	0	9.7402682624172						162	7	4	NaN	NaN	NaN	2.9006E-06	1	19333	84.309	79.159	1	107330			16109	189	13565	13961	16109	16109		
PWIGLAEALGTLMR	14	Oxidation (M)	_PWIGLAEALGTLM(Oxidation (M))R_	PWIGLAEALGTLM(1)R	PWIGLAEALGTLM(97)R	0	1	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.418694	1542.82283	0.70462	0.00054426	0.9455	0.00073032	1.6501	0.0012746	772.419325100467	18.834	0.097538	18.834	18.781	18.878	0	387	37	1.06589869032374	0.0240906221251305	1.06589869032374	430.743443264221	0	9.73533190232575						253	12	3	NaN	NaN	NaN	2.3753E-07	1	19830	96.946	87.431	1	50227			16110	189	13565	13962	16110	16110	39	
PWIPVLER	8	Unmodified	_PWIPVLER_			0	0	0	Q6NS38	Q6NS38	Q6NS38	ALKBH2	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.295102	1008.57565	-0.6852	-0.00034623	-1.9999	-0.0010106	-2.6851	-0.0013568	505.294051127928	13.806	0.10638	13.806	13.762	13.868	0	711	52	0.847456455381371	0.0346592613234649	0.847456455381371	344.076608362044	0	14.0720399364294						250	13	2	NaN	NaN	NaN	0.012404	1	4487	51.43	27.855	1	63599			16111	2044	13566	13963	16111	16111		
PWISLPR	7	Unmodified	_PWISLPR_			0	0	0	P62701;Q8TD47;P22090	P62701	P62701	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.755613	867.496673	-2.2262	-0.00096784	-0.068091	-2.9603E-05	-2.2943	-0.00099745	434.755613702118	12.05	0.15073	12.05	12.015	12.165	0	723	58	0.839303037468863	0.0387691446522459	0.839303037468863	341.511049291188	0	15.7751022923011						330	18	2	NaN	NaN	NaN	0.019864	1	1824	75.915	36.154	1	66810			16112	1394	13567	13964	16112	16112		
PWISLPR	7	Unmodified	_PWISLPR_			0	0	0	P62701;Q8TD47;P22090	P62701	P62701	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.755613	867.496673	-2.575	-0.0011195	0.46075	0.00020032	-2.1142	-0.00091918	434.7557979734	12.05	0.39019	12.05	11.926	12.316	0	804	49	0.78414869089473	0.0327455032582672	0.78414869089473	319.06883218871	0	13.3240922357792						1113	45	4	NaN	NaN	NaN	5.8727E-07	1	1825	150.06	90.057	1	1336300			16113	1394	13567	13964	16113	16113		
PWLAGPK	7	Unmodified	_PWLAGPK_			0	0	0	P05423	P05423	P05423	POLR3D	DNA-directed RNA polymerase III subunit RPC4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	384.723781	767.43301	-1.5658	-0.00060242	-1.627	-0.00062593	-3.1928	-0.0012283	384.723776495888	6.6402	0.070943	6.6402	6.6047	6.6757	0	888	13	0.726732155490709	0.00821838251404938	0.726732155490709	296.305672301311	0	3.35082648766308						53	9	2	NaN	NaN	NaN	0.056691	1	745	39.761	27.209	1	8972.3			16114	532	13568	13965	16114	16114		
PWLFTEIK	8	Unmodified	_PWLFTEIK_			0	0	0	Q96G46	Q96G46	Q96G46	DUS3L	tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.289485	1032.56442	-0.34863	-0.00018034	-3.8899	-0.0020122	-4.2386	-0.0021926	517.287485009317	15.145	0.10641	15.145	15.109	15.216	0	687	16	0.863749705078866	0.0101769186056949	0.863749705078866	350.582175725947	0	4.13064831859435						100	13	2	NaN	NaN	NaN	0.038353	1	5069	58.286	15.451	1	33504			16115	2535	13569	13966	16115	16115		
PWLGLDHFNK	10	Unmodified	_PWLGLDHFNK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	409.548741	1225.62439	-1.7148	-0.0007023	-0.99158	-0.0004061	-2.7064	-0.0011084	409.548071225127	10.755	0.1064	10.755	10.72	10.826	0	846	31	0.755468431110051	0.0205087467208043	0.755468431110051	458.990149120099	0	12.4602330527787						216	13	3	NaN	NaN	NaN	0.055776	1	10164	33.396	30.051	1	80516			16116	2452	13570	13967	16116	16116		
PWLTEIMNNYK	11	Unmodified	_PWLTEIMNNYK_			0	0	0	Q9H3G5	Q9H3G5	Q9H3G5	CPVL	Probable serine carboxypeptidase CPVL	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.850113	1407.68567	1.0142	0.00071489	0.41205	0.00029043	1.4263	0.0010053	704.850831815752	16.032	0.079792	16.032	16.005	16.085	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	418.918849517814	0	7.32337409914817						185	10	3	NaN	NaN	NaN	6.1744E-06	1	15693	108.3	89.047	1	48990			16117	2878	13571	13968	16117	16117		
PWLVDDWDLITR	12	Unmodified	_PWLVDDWDLITR_			0	0	0	Q9UBU8	Q9UBU8	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.893366	1527.77218	0.5998	0.00045878	2.5584	0.0019569	3.1582	0.0024157	764.894251708796	19.055	0.10634	19.055	18.984	19.091	0	420	28	1.04379886199097	0.0180966528124649	1.04379886199097	421.849565736802	0	7.31373199206843						156	13	3	NaN	NaN	NaN	4.3434E-05	1	19357	61.577	36.756	1	34411			16118	3190	13572	13969	16118	16118		
PWPDATYGTGSASR	14	Unmodified	_PWPDATYGTGSASR_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.338955	1464.66336	1.5338	0.0011248	0.4807	0.00035252	2.0145	0.0014773	733.339675100299	7.5092	0.22168	7.5092	7.4383	7.66	0	471	40	1.00957851518677	0.0262082910405103	1.00957851518677	408.177302501708	0	10.5961343067172						594	26	3	NaN	NaN	NaN	0.00026216	1	17406	58.476	53.647	1	248560			16119	3355	13573	13970	16119	16119		
PWSQHYHQGYY	11	Unmodified	_PWSQHYHQGYY_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.214309	1464.6211	-0.88099	-0.00043099	0.029952	1.4653E-05	-0.85104	-0.00041634	489.214387414804	5.3898	0.070946	5.3898	5.3632	5.4342	0	864	19	0.743159753061487	0.01231382719818	0.743159753061487	450.691656401586	0	7.46776067154906						116	9	3	NaN	NaN	NaN	0.0024455	1	17402	30.918	29.416	1	24988			16120	1509	13574	13971	16120	16120		
PWSQHYHQGYY	11	Unmodified	_PWSQHYHQGYY_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.214309	1464.6211	-0.74457	-0.00036425	1.2652	0.00061896	0.52065	0.00025471	489.214999760474	5.381	0.29257	5.381	5.3455	5.6381	0	804	73	0.78414869089473	0.0490909291602131	0.78414869089473	475.549525953594	0	29.7713537774621						987	34	5	NaN	NaN	NaN	0.00031288	1	17403	104.39	99.243	1	599450			16121	1509	13574	13971	16121	16121		
PWSQHYHQGYY	11	Unmodified	_PWSQHYHQGYY_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.317825	1464.6211	1.8717	0.0013725	-0.15902	-0.00011661	1.7126	0.0012559	733.317543231087	5.381	0.28369	5.381	5.3278	5.6115	0	468	43	1.01159370163332	0.0282145658973765	1.01159370163332	408.992164664638	0	11.4072837373436						624	33	5	NaN	NaN	NaN	1.1907E-11	1	17404	170.85	161.34	1	365770			16122	1509	13574	13971	16122	16122		
PWTALDSLQK	10	Unmodified	_PWTALDSLQK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.811313	1157.60807	1.0257	0.00059474	1.7939	0.0010401	2.8196	0.0016348	580.315894366859	10.95	0.32811	10.95	10.746	11.075	0	633	91	0.900343422309015	0.0608628136507996	0.900343422309015	364.915156879546	0	24.6681017944832						1153	38	2	NaN	NaN	NaN	0.0067755	1	8291	76.605	43.209	1	707090			16123	3465	13575	13972	16123	16123		
PWVSDFSHPHYLAGR	15	Unmodified	_PWVSDFSHPHYLAGR_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	442.969311	1767.84814	-1.55	-0.00068658	-0.41386	-0.00018333	-1.9638	-0.00086991	443.220058879695	9.8686	0.133	9.8686	9.8154	9.9484	0	780	28	0.800512323802183	0.0183975615701674	0.800512323802183	646.256073880844	0	14.8524083337604						351	16	5	NaN	NaN	NaN	0.0021628	1	26336	77.358	74.464	1	159540			16124	2577	13576	13973	16124	16124		
PWVSDFSHPHYLAGR	15	Unmodified	_PWVSDFSHPHYLAGR_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.289989	1767.84814	0.91357	0.00053927	0.92834	0.00054799	1.8419	0.0010873	590.290518078009	9.8686	0.097529	9.8686	9.8154	9.913	0	645	31	0.892219381832517	0.0203185572291886	0.892219381832517	540.220984593097	0	12.3024798781204						194	12	4	NaN	NaN	NaN	0.015906	1	26338	33.1	32.912	1	35785			16125	2577	13576	13973	16125	16125		
PYAELWMGTHPR	12	Unmodified	_PYAELWMGTHPR_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.571328	1456.69215	-1.214	-0.0005907	0.9547	0.00046453	-0.25932	-0.00012618	486.572230788272	9.4342	0.14185	9.4342	9.3721	9.514	0	747	31	0.822982596624503	0.0204147391156737	0.822982596624503	499.125863914426	0	12.381214790557						302	17	4	NaN	NaN	NaN	0.0062419	1	17145	41.796	36.645	1	91421			16126	956	13577	13974	16126	16126		
PYAVDFQR	8	Unmodified	_PYAVDFQR_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.250892	994.48723	0.76386	0.0003806	0.37998	0.00018933	1.1438	0.00056992	498.251089764973	7.2077	0.22168	7.2077	7.1545	7.3762	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	359.844387009057	0	9.90410367957668						454	26	4	NaN	NaN	NaN	2.5518E-05	1	4150	100.75	83.06	1	223210			16127	1543	13578	13975	16127	16127		
PYCNHPCYAAMFGPK	15	Unmodified	_PYCNHPCYAAMFGPK_			0	0	0	P50238	P50238	P50238	CRIP1	Cysteine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.926677	1811.7582	1.209	0.00073133	0.034339	2.0773E-05	1.2433	0.00075211	605.261382024308	8.547	0.20405	8.547	8.4938	8.6979	0	567	52	0.944945209309785	0.0344196803127764	0.944945209309785	572.037621835542	0	20.8365012875634						678	24	5	NaN	NaN	NaN	1.6275E-08	1	27507	126.29	122.79	1	309580			16128	1159	13579	13976	16128	16128		
PYCNHPCYAAMFGPK	15	Unmodified	_PYCNHPCYAAMFGPK_			0	0	0	P50238	P50238	P50238	CRIP1	Cysteine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.886377	1811.7582	1.9458	0.0017646	-0.29316	-0.00026586	1.6526	0.0014987	906.886828853306	8.547	0.070908	8.547	8.5205	8.5914	0	261	28	1.14997238118939	0.0179674763675075	1.14997238118939	464.104682483046	0	7.2512958145474						181	9	4	NaN	NaN	NaN	0.005902	1	27508	40.533	39.57	1	31922			16129	1159	13579	13976	16129	16129		
PYEGSILEADCDILIPAASEK	21	Unmodified	_PYEGSILEADCDILIPAASEK_			0	0	0	P00367	P00367	P00367	GLUD1	Glutamate dehydrogenase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1146.05922	2290.10388	0.62231	0.0007132	0.011479	1.3156E-05	0.63379	0.00072636	1146.56058237305	16.138	0.21284	16.138	16.041	16.253	0	81	70	1.2692388538616	0.0455403764010889	1.2692388538616	511.424508979629	0	18.3499461656206						1150	25	5	NaN	NaN	NaN	8.206E-06	1	35562	59.997	58.373	1	266660			16130	472	13580	13977	16130	16130		
PYESYIGANVR	11	Unmodified	_PYESYIGANVR_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.817127	1267.6197	1.4711	0.00093391	-4.4883	-0.0028492	-3.0171	-0.0019153	634.814385263537	7.6068	0.21286	7.6068	7.5181	7.7309	0	543	55	0.961130371139249	0.0363763278490683	0.961130371139249	389.154246235736	0	14.7284935217984						540	25	3	NaN	NaN	NaN	0.0047114	1	11437	79.059	59.803	1	219330			16131	334	13581	13978	16131	16131		
PYFPIPEEYTFIQNVPLEDR	20	Unmodified	_PYFPIPEEYTFIQNVPLEDR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.077519	2466.21073	0.44714	0.00036803	-0.80453	-0.00066219	-0.35739	-0.00029416	823.411171163983	19.144	0.14186	19.144	19.1	19.242	0	543	229	0.961130371139249	0.15333524923127	0.961130371139249	580.662257398778	0	92.6367479698901						2640	17	5	NaN	NaN	NaN	3.0104E-22	1	36659	181.08	156.33	1	1103600			16132	1509	13582	13979	16132	16132		
PYFPIPEEYTFIQNVPLEDR	20	Unmodified	_PYFPIPEEYTFIQNVPLEDR_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1234.11264	2466.21073	0.033119	4.0873E-05	0.53973	0.00066609	0.57285	0.00070696	1234.61507673241	19.135	0.088672	19.135	19.109	19.197	0	66	52	1.27913350869533	0.0336464433954791	1.27913350869533	515.189383588967	0	13.551588098539						476	11	5	NaN	NaN	NaN	0.00096697	1	36660	51.829	47.232	1	127450			16133	1509	13582	13979	16133	16133		
PYGIVEK	7	Unmodified	_PYGIVEK_			0	0	0	O95139	O95139	O95139	NDUFB6	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	403.226354	804.438155	-0.85683	-0.0003455	1.5124	0.00060985	0.6556	0.00026436	403.226868939879	4.7159	0.14186	4.7159	4.6805	4.8223	0	747	34	0.822982596624503	0.0224546522756353	0.822982596624503	335.278661045924	0	9.14790395338315						221	17	2	NaN	NaN	NaN	0.01605	1	1027	56.091	26.781	1	55798			16134	405	13583	13980	16134	16134		
PYGPMSVGLDFSLPGMEHVYGIPEHADNLR	30	Unmodified	_PYGPMSVGLDFSLPGMEHVYGIPEHADNLR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	825.396952	3297.5587	1.4505	0.0011972	0.30831	0.00025448	1.7588	0.0014517	825.898609353914	17.867	0.18618	17.867	17.779	17.965	0	405	55	1.05384839605172	0.0361708486763277	1.05384839605172	847.701969682817	0	29.0953611381854						873	22	6	NaN	NaN	NaN	0.017496	1	38545	37.242	37.227	1	185470			16135	1771	13584	13981	16135	16135		
PYGTVTAANSSFLTDGASAMLIMAEEK	27	Unmodified	_PYGTVTAANSSFLTDGASAMLIMAEEK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	925.778704	2774.31428	1.2501	0.0011574	0.93301	0.00086376	2.1831	0.0020211	926.449994414648	19.534	0.079814	19.534	19.508	19.587	0	294	31	1.12800004657306	0.0199872193339929	1.12800004657306	681.051598455238	0	12.0676658812617						155	10	4	NaN	NaN	NaN	2.3655E-06	1	37830	97.551	97.355	1	31494			16136	1267	13585	13982	16136	16136		
PYIAPSDLER	10	Unmodified	_PYIAPSDLER_			0	0	0	Q8NHH9	Q8NHH9	Q8NHH9	ATL2	Atlastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.800946	1159.58734	0.97662	0.00056722	0.97317	0.00056522	1.9498	0.0011324	580.801439793531	8.1656	0.11529	8.1656	8.1124	8.2277	0	555	28	0.953040030838688	0.0182095678399629	0.953040030838688	386.265682916635	0	7.3803103014784						239	14	3	NaN	NaN	NaN	0.034229	1	8340	43.734	0	1	61071			16137	2323	13586	13983	16137	16137		
PYIDEAR	7	Unmodified	_PYIDEAR_			0	0	0	Q96DG6	Q96DG6	Q96DG6	CMBL	Carboxymethylenebutenolidase homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.216517	862.418482	-0.53041	-0.00022925	3.344	0.0014453	2.8135	0.0012161	432.217569901305	4.1662	0.44337	4.1662	3.8558	4.2992	0	792	82	0.792332785124922	0.0551773706201475	0.792332785124922	322.42846793994	0	22.4536399452453						942	51	4	NaN	NaN	NaN	0.006951	1	1751	80.294	24.203	1	666000			16138	2504	13587	13984	16138	16138		
PYIQVDIGGGQTK	13	Unmodified	_PYIQVDIGGGQTK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.364441	1374.71433	1.9528	0.0013442	2.0244	0.0013935	3.9772	0.0027378	688.365176572882	9.6558	0.47878	9.6558	9.5406	10.019	0	495	82	0.993446994398923	0.0544326408515292	0.993446994398923	401.901087320465	0	22.0208402333434						1701	55	6	NaN	NaN	NaN	0.0043847	1	14648	48.701	34.706	1	1472000			16139	638	13588	13985	16139	16139		
PYLFQSDPSGAYFAWK	16	Unmodified	_PYLFQSDPSGAYFAWK_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.948869	1875.88319	0.47118	0.00044241	2.8794	0.0027036	3.3506	0.003146	939.452801410859	16.803	0.079778	16.803	16.785	16.865	0	252	25	1.15595906938629	0.0159634054773448	1.15595906938629	466.399607495411	0	6.44082151877262						94	10	2	NaN	NaN	NaN	0.0020043	1	29053	46.068	36.807	1	35278			16140	842	13589	13986	16140	16140		
PYLISGADDR	10	Unmodified	_PYLISGADDR_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.77747	1105.54039	1.0724	0.00059387	2.3301	0.0012903	3.4025	0.0018842	553.778400008835	7.0214	0.28381	7.0214	6.9505	7.2343	0	588	28	0.93076847747433	0.0182373300269247	0.93076847747433	377.455733651406	0	7.39580782090411						372	33	2	NaN	NaN	NaN	1.6772E-07	1	6858	133.98	107.03	1	201960			16141	973	13590	13987	16141	16141		
PYLLISTQIR	10	Unmodified	_PYLLISTQIR_			0	0	0	P30047	P30047	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.358431	1202.70231	0.16516	9.9488E-05	-3.2335	-0.0019477	-3.0684	-0.0018483	602.357213664681	13.008	0.15075	13.008	12.972	13.123	0	558	28	0.951016745717027	0.0182095678399629	0.951016745717027	385.283214337512	0	7.37720009734238						203	18	3	NaN	NaN	NaN	0.0038033	1	9555	51.864	44.217	1	58556			16142	897	13591	13988	16142	16142		
PYLPQICGTVLWR	13	Unmodified	_PYLPQICGTVLWR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.926686	1601.83882	1.1054	0.00088642	-3.6783	-0.0029497	-2.5729	-0.0020633	802.923611368556	16.404	0.20393	16.404	16.307	16.51	0	363	67	1.08195024817156	0.0441174739341266	1.08195024817156	437.086806678408	0	17.8225993599733						782	24	4	NaN	NaN	NaN	0.03343	1	21655	48.785	32.906	1	190050			16143	343	13592	13989	16143	16143		
PYNAEDNENFK	11	Unmodified	_PYNAEDNENFK_			0	0	0	Q9NWV4	Q9NWV4	Q9NWV4	C1orf123	UPF0587 protein C1orf123	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.791306	1339.56806	2.3288	0.0015622	-0.30635	-0.0002055	2.0225	0.0013567	670.790763156539	4.3169	0.15075	4.3169	4.2815	4.4322	0	537	49	0.965173861991602	0.0323524136219553	0.965173861991602	390.565122970165	0	13.0916562313108						351	18	3	NaN	NaN	NaN	0.0016517	1	13571	57.888	51.625	1	75726			16144	3087	13593	13990	16144	16144		
PYNPFEEEEEDK	12	Unmodified	_PYNPFEEEEEDK_			0	0	0	Q8N3F8	Q8N3F8	Q8N3F8	MICALL1	MICAL-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.320093	1524.62563	2.6975	0.002059	9.3826	0.0071619	12.08	0.0092209	763.32741219161	4.2904	0.088658	4.2904	4.2549	4.3435	0	459	55	1.01763759082241	0.036265853684099	1.01763759082241	411.284128097183	0	14.6570548756072						283	11	4	NaN	NaN	NaN	0.0079412	1	19254	32.14	28.532	1	48825			16145	2248	13594	13991	16145	16145		
PYQYPALTPEQK	12	Unmodified	_PYQYPALTPEQK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.866817	1433.71908	2.6817	0.0019251	-0.49953	-0.0003586	2.1821	0.0015665	717.866729679271	8.1922	0.63869	8.1922	7.935	8.5736	0	474	91	1.00756305028564	0.0604431310021558	1.00756305028564	407.444711849532	0	24.4423751818561						2861	73	5	NaN	NaN	NaN	0.005683	1	16499	53.517	30.464	1	4583600			16146	504	13595	13992	16146	16146		
PYSDGEGGIEDENR	14	Unmodified	_PYSDGEGGIEDENR_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.323699	1536.63284	2.6818	0.0020632	-1.9132	-0.0014718	0.76862	0.00059132	769.321666811481	4.2904	0.14188	4.2904	4.246	4.3879	0	489	43	0.997481546940468	0.0282418742669083	0.997481546940468	403.109642307175	0	11.4133157337466						284	17	4	NaN	NaN	NaN	1.384E-06	1	19619	81.48	71.392	1	66991			16147	2422	13596	13993	16147	16147		
PYVEEGLHPQIIIR	14	Unmodified	_PYVEEGLHPQIIIR_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.461947	1662.90934	2.929	0.0024383	-0.49526	-0.00041228	2.4338	0.002026	832.461286096845	10.968	0.13304	10.968	10.915	11.048	0	279	43	1.13799159301878	0.0279667154484231	1.13799159301878	459.581642245798	0	11.2944498824563						365	16	4	NaN	NaN	NaN	1.108E-07	1	23432	94.66	75.848	1	115110			16148	2679	13597	13994	16148	16148		
PYVEEGLHPQIIIR	14	Unmodified	_PYVEEGLHPQIIIR_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.31039	1662.90934	1.8111	0.0010057	1.2388	0.0006879	3.0498	0.0016936	555.311174140959	10.968	0.31925	10.968	10.906	11.225	0	540	49	0.963152256458504	0.0323568915973725	0.963152256458504	583.455375828712	0	19.6010570717146						1071	37	6	NaN	NaN	NaN	4.9052E-06	1	23433	148.9	128.56	1	992560			16149	2679	13597	13994	16149	16149		
PYVLPSVR	8	Unmodified	_PYVLPSVR_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.774003	929.533452	-0.27931	-0.00013009	-0.83047	-0.00038681	-1.1098	-0.00051691	465.77365031214	8.6979	0.31957	8.6979	8.5914	8.9109	0	726	70	0.837263974740672	0.0469310793669843	0.837263974740672	340.327113504002	0	19.0763239031513						1242	37	4	NaN	NaN	NaN	0.0014905	1	2873	92.677	74.274	1	615550			16150	482	13598	13995	16150	16150		
PYVPLLEAEEVR	12	Unmodified	_PYVPLLEAEEVR_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.882467	1413.75038	1.5744	0.0011145	1.6833	0.0011916	3.2577	0.0023061	707.883277555029	13.717	0.1773	13.717	13.646	13.824	0	411	31	1.04982941439551	0.0201004566486325	1.04982941439551	424.593936918067	0	8.12944646555559						389	21	4	NaN	NaN	NaN	0.00016617	1	15891	60.547	52.074	1	120320			16151	2114	13599	13996	16151	16151		
PYVYTTPPFVR	11	Unmodified	_PYVYTTPPFVR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.355888	1338.69722	0.94683	0.00063471	-3.022	-0.0020258	-2.0752	-0.0013911	670.353620038943	12.671	0.15077	12.671	12.609	12.76	0	501	40	0.98941132619024	0.0262372893807942	0.98941132619024	400.375672368536	0	10.6171943850817						250	18	3	NaN	NaN	NaN	0.02796	1	13560	39.01	32.747	1	57050			16152	1901	13600	13997	16152	16152		
QAALGIMQMVEDTLIEHAHTK	21	Unmodified	_QAALGIMQMVEDTLIEHAHTK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	584.798886	2335.16644	-1.4059	-0.00082215	0.84004	0.00049125	-0.56583	-0.0003309	585.050187173671	19.082	0.11528	19.082	19.046	19.162	0	669	22	0.875957769340875	0.0142397763386857	0.875957769340875	705.827490402739	0	11.4740983513323						156	14	4	NaN	NaN	NaN	0.0010028	1	35936	46.206	45.19	1	29219			16153	702	13601	13998	16153	16153		
QAALQVAEGFISR	13	Unmodified	_QAALQVAEGFISR_			0	0	0	P40121	P40121	P40121	CAPG	Macrophage-capping protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.377883	1388.74121	1.6303	0.0011337	-5.1413	-0.0035751	-3.511	-0.0024414	695.373532073276	13.877	0.41673	13.877	13.584	14.001	0	531	64	0.969216233931596	0.0424126440707223	0.969216233931596	392.059076021101	0	17.1564006708052						745	48	4	NaN	NaN	NaN	6.8005E-06	1	15111	108.2	87.107	1	367980			16154	1014	13602	13999	16154	16154		
QAAPCVLFFDELDSIAK	17	Unmodified	_QAAPCVLFFDELDSIAK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.988876	1922.9448	-0.042232	-2.7113E-05	-1.2201	-0.00078332	-1.2624	-0.00081043	642.322277629835	19.978	0.026603	19.978	19.96	19.986	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	571.786563957499	0	11.0247179491784						67	4	3	NaN	NaN	NaN	0.065679	1	30117	26.517	26.517	1	17085			16155	1265	13603	14000	16155	16155		
QAAPCVLFFDELDSIAK	17	Unmodified	_QAAPCVLFFDELDSIAK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.479676	1922.9448	1.3122	0.001263	0.71847	0.00069152	2.0307	0.0019545	962.981993963065	19.978	0.1153	19.978	19.933	20.049	0	225	97	1.17390432875292	0.0637222140008449	1.17390432875292	473.554956299471	0	25.7056469827763						565	14	5	NaN	NaN	NaN	1.6782E-19	1	30118	160.52	147.18	1	227390			16156	1265	13603	14000	16156	16156		
QAASSLQQASLK	12	Unmodified	_QAASSLQQASLK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.335684	1230.65681	1.7058	0.0010513	-0.03903	-2.4055E-05	1.6667	0.0010273	616.33591433055	4.6805	0.11526	4.6805	4.645	4.7603	0	591	28	0.928742107665821	0.0182398570098127	0.928742107665821	376.16216302169	0	7.38756648308038						163	14	3	NaN	NaN	NaN	0.0073192	1	10333	51.531	42.017	1	49214			16157	1007	13604	14001	16157	16157		
QADFEAHNILR	11	Unmodified	_QADFEAHNILR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.558076	1312.6524	-2.3967	-0.0010511	2.0651	0.00090568	-0.33159	-0.00014542	438.558854088146	7.2255	0.13302	7.2255	7.1811	7.3142	0	780	28	0.800512323802183	0.0183975615701674	0.800512323802183	485.998156030979	0	11.1693233604448						308	16	4	NaN	NaN	NaN	0.00093614	1	12728	58.916	52.225	1	100910			16158	1155	13605	14002	16158	16158		
QADFEAHNILR	11	Unmodified	_QADFEAHNILR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.333476	1312.6524	1.6019	0.001053	-0.10289	-6.7636E-05	1.499	0.00098535	657.333502937596	7.2166	0.20394	7.2166	7.1368	7.3408	0	492	34	0.995464410099171	0.0221885084340552	0.995464410099171	402.90676206559	0	8.98063255454775						317	24	3	NaN	NaN	NaN	1.6546E-05	1	12730	132.39	125.25	1	138660			16159	1155	13605	14002	16159	16159		
QADFVQTPITGIFGGHIR	18	Unmodified	_QADFVQTPITGIFGGHIR_			0	0	0	Q14694	Q14694	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.014525	1956.02175	0.67419	0.00044025	0.058821	3.8411E-05	0.73301	0.00047867	653.348626971441	15.331	0.14181	15.331	15.26	15.402	0	522	40	0.975277694896658	0.0262590697317363	0.975277694896658	590.069322860169	0	15.8874457773644						319	17	4	NaN	NaN	NaN	0.0039502	1	30827	83.214	82.475	1	90194			16160	1769	13606	14003	16160	16160		
QADLYISEGLHPR	13	Unmodified	_QADLYISEGLHPR_			0	0	0	P40227;Q92526	P40227;Q92526	P40227	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.259807	1497.75759	-0.017925	-8.967E-06	-0.61941	-0.00030986	-0.63733	-0.00031883	500.25951350394	8.4051	0.35474	8.4051	8.2987	8.6534	0	720	37	0.841341816837976	0.0244636567629751	0.841341816837976	510.128978688872	0	14.8329965178646						848	41	5	NaN	NaN	NaN	0.00077084	1	18468	124.81	107.34	1	626100			16161	1016;2407	13607	14004	16161	16161		
QADLYISEGLHPR	13	Unmodified	_QADLYISEGLHPR_			0	0	0	P40227;Q92526	P40227;Q92526	P40227	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.886072	1497.75759	1.9746	0.0014807	0.059121	4.4334E-05	2.0337	0.0015251	749.886361293188	8.3874	0.18628	8.3874	8.343	8.5293	0	372	43	1.07593298845566	0.0280941036643514	1.07593298845566	434.914767085352	0	11.3562282063598						458	22	3	NaN	NaN	NaN	3.1215E-07	1	18471	128.97	113.09	1	203800			16162	1016;2407	13607	14004	16162	16162		
QADNPHVALYQAR	13	Unmodified	_QADNPHVALYQAR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.876039	1481.73752	2.4864	0.0018446	-1.4006	-0.001039	1.0858	0.00080554	741.874794691963	5.0972	0.11526	5.0972	5.0529	5.1681	0	444	25	1.02770517576159	0.01610257649452	1.02770517576159	415.461194387546	0	6.50964480953638						175	14	3	NaN	NaN	NaN	0.0056471	1	17962	60.547	57.876	1	35765			16163	3410	13608	14005	16163	16163		
QADNPHVALYQAR	13	Unmodified	_QADNPHVALYQAR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.919785	1481.73752	0.99417	0.00049204	7.5218	0.0037227	8.5159	0.0042147	495.258968401902	5.0883	0.27489	5.0883	5.0263	5.3012	0	708	79	0.849494101904619	0.0529604564345986	0.849494101904619	515.122811949355	0	32.1145716957253						499	32	3	NaN	NaN	NaN	0.030653	1	17968	53.517	51.873	1	145590			16164	3410	13608	14005	16164	16164		
QADTVYFLPITPQFVTEVIK	20	Unmodified	_QADTVYFLPITPQFVTEVIK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.12502	2308.23549	-0.1494	-0.00017258	1.1152	0.0012881	0.96575	0.0011156	1155.62758334655	20.075	0.053194	20.075	20.049	20.102	0	63	64	1.28111162701928	0.0415689526304328	1.28111162701928	516.184037668373	0	16.748915049929						269	7	5	NaN	NaN	NaN	5.887E-11	1	35707	100.56	91.045	1	107590			16165	922	13609	14006	16165	16165		
QADVNLVNAK	10	Unmodified	_QADVNLVNAK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.293288	1070.57202	2.1744	0.0011661	0.35885	0.00019245	2.5332	0.0013585	536.293735648452	5.1061	0.29264	5.1061	5.0085	5.3012	0	615	64	0.912521036363781	0.0426305360144882	0.912521036363781	370.204614735141	0	17.2949669457315						558	34	3	NaN	NaN	NaN	0.0060001	1	5974	79.059	69.666	1	188680			16166	189	13610	14007	16166	16166		
QADYVPSDQDLLR	13	Unmodified	_QADYVPSDQDLLR_			0	0	0	P63092;Q5JWF2	P63092	P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.372995	1518.73144	2.1621	0.001644	0.12329	9.3748E-05	2.2854	0.0017378	760.373721546537	10.516	0.20398	10.516	10.436	10.64	0	417	34	1.04580932352505	0.0221181322684503	1.04580932352505	422.684691581162	0	8.93948419271027						425	24	4	NaN	NaN	NaN	7.471E-06	1	19088	106	81.314	1	120560			16167	1424	13611	14008	16167	16167		
QAEAFLNNQEYVLAHTEMPTTLEGAEAAIK	30	Unmodified	_QAEAFLNNQEYVLAHTEMPTTLEGAEAAIK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1097.20636	3288.59726	0.34162	0.00037483	0.82923	0.00090983	1.1708	0.0012847	1097.54266342477	16.723	0.097558	16.723	16.679	16.777	0	249	22	1.15795408347545	0.013965099415836	1.15795408347545	698.591323360702	0	8.42511583230623						207	12	5	NaN	NaN	NaN	0.033978	1	38538	23.308	23.296	1	38089			16168	1511	13612	14009	16168	16168		
QAEETYENIPGQSK	14	Unmodified	_QAEETYENIPGQSK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.373192	1592.73183	2.7435	0.0021876	-2.752	-0.0021943	-0.0084434	-6.7325E-06	797.370570856936	5.5671	0.24833	5.5671	5.5139	5.7623	0	420	58	1.04379886199097	0.0382146049252179	1.04379886199097	421.695055274686	0	15.4387119233892						744	29	4	NaN	NaN	NaN	7.9531E-08	1	21346	159.44	117.61	1	238590			16169	74	13613	14010	16169	16169		
QAEIENPLEDPVTGDYVHK	19	Unmodified	_QAEIENPLEDPVTGDYVHK_			0	0	0	Q93050	Q93050	Q93050	ATP6V0A1	V-type proton ATPase 116 kDa subunit a isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.683169	2153.02768	1.1476	0.00082477	-1.7419	-0.0012519	-0.59432	-0.00042713	719.01655633662	11.438	0.12415	11.438	11.367	11.491	0	507	31	0.985374541851584	0.0201895069753196	0.985374541851584	595.794078896862	0	12.207326453898						265	15	4	NaN	NaN	NaN	2.4446E-05	1	34083	76.196	73.649	1	58171			16170	2454	13614	14011	16170	16170		
QAEILQESR	9	Unmodified	_QAEILQESR_			0	0	0	O75347	O75347	O75347	TBCA	Tubulin-specific chaperone A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.28292	1072.55129	1.7944	0.00096412	-0.62036	-0.00033331	1.1741	0.00063082	537.283186465583	4.5475	0.50541	4.5475	4.3879	4.8933	0	663	64	0.880024865079826	0.0426837906416542	0.880024865079826	357.012737540983	0	17.3161663383464						565	58	3	NaN	NaN	NaN	2.7757E-06	1	6018	119.07	87.115	1	463550			16171	320	13615	14012	16171	16171		
QAEIMDMK	8	Unmodified	_QAEIMDMK_			0	0	0	O43633	O43633	O43633	CHMP2A	Charged multivesicular body protein 2a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.225171	964.435788	0.62752	0.00030323	4.8797	0.002358	5.5073	0.0026612	483.227181175866	6.0727	0.25715	6.0727	5.9929	6.25	0	711	40	0.847456455381371	0.0264930907704451	0.847456455381371	344.288440258532	0	10.7631074624118						475	30	3	NaN	NaN	NaN	0.046909	1	3521	22.386	13.623	1	108570			16172	213	13616	14013	16172	16172		
QAEQLSAAGEGGDAGR	16	Unmodified	_QAEQLSAAGEGGDAGR_			0	0	0	Q9NRX1	Q9NRX1	Q9NRX1	PNO1	RNA-binding protein PNO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.852958	1515.69136	2.688	0.0020398	-2.0304	-0.0015408	0.65762	0.00049904	758.851580380156	3.714	0.133	3.714	3.6696	3.8026	0	510	37	0.983355730988811	0.0242307604673273	0.983355730988811	397.450034364559	0	9.79352260522717						269	16	3	NaN	NaN	NaN	1.9883E-08	1	18990	130.65	117.38	1	69315			16173	3028	13617	14014	16173	16173		
QAFAPFGPIK	10	Unmodified	_QAFAPFGPIK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.300384	1074.58622	-0.85876	-0.00046227	-1.2542	-0.00067516	-2.113	-0.0011374	538.299784056366	11.953	0.12417	11.953	11.89	12.015	0	672	52	0.873923798053065	0.0345727248070983	0.873923798053065	354.5291169399	0	14.0252933074635						327	15	3	NaN	NaN	NaN	0.0078323	1	6082	45.489	32.662	1	90763			16174	3225	13618	14015	16174	16174		
QAFDDAIAELDTLNEDSYK	19	Unmodified	_QAFDDAIAELDTLNEDSYK_			0	0	0	Q04917	Q04917	Q04917	YWHAH	14-3-3 protein eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1079.49476	2156.97497	0.92978	0.0010037	1.9393	0.0020935	2.8691	0.0030971	1079.99793239188	17.344	0.18619	17.344	17.282	17.468	0	156	61	1.21966378336455	0.0397226298614595	1.21966378336455	491.631737472059	0	16.0117122457113						875	22	5	NaN	NaN	NaN	4.4247E-11	1	34129	137.58	113.41	1	310240			16175	1547	13619	14016	16175	16175		
QAFEELRDDLVELSK	15	Unmodified	_QAFEELRDDLVELSK_			0	0	1	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.975624	1790.90504	-0.67019	-0.00040076	-0.3916	-0.00023417	-1.0618	-0.00063492	598.30942322669	15.783	0.11529	15.783	15.739	15.854	0	693	28	0.85967808974117	0.0183260879062385	0.85967808974117	520.465794776616	0	11.0949691763557						270	14	4	NaN	NaN	NaN	8.8437E-05	1	26997	91.245	53.145	1	90865			16176	1842	13620	14017	16176	16176		
QAFITAQNHGYALDNTLPAGWK	22	Unmodified	_QAFITAQNHGYALDNTLPAGWK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	806.072991	2415.19714	1.3775	0.0011103	-0.65265	-0.00052609	0.72481	0.00058425	806.406892154076	13.194	0.15963	13.194	13.15	13.309	0	585	118	0.932794566565362	0.0789301162904971	0.932794566565362	563.609993413643	0	47.6908892023525						1585	19	6	NaN	NaN	NaN	2.444E-39	1	36421	280.9	261.89	1	891750			16177	922	13621	14018	16177	16177		
QAFTDVATGSLGQGLGAACGMAYTGK	26	Unmodified	_QAFTDVATGSLGQGLGAACGMAYTGK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1266.59651	2531.17846	0.067022	8.489E-05	0.59647	0.00075549	0.6635	0.00084038	1267.09878192162	14.808	0.088686	14.808	14.772	14.861	0	63	49	1.28111162701928	0.0316650717164555	1.28111162701928	515.911840142376	0	12.7517267605214						411	11	5	NaN	NaN	NaN	1.1976E-18	1	36964	136.7	130.31	1	78250			16178	888	13622	14019	16178	16178		
QAFTDVATGSLGQGLGAACGMAYTGK	26	Unmodified	_QAFTDVATGSLGQGLGAACGMAYTGK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	844.733429	2531.17846	1.3253	0.0011196	2.5831	0.002182	3.9084	0.0033016	845.405060979054	14.808	0.23944	14.808	14.728	14.967	-1.7764E-15	321	97	1.10999792833052	0.0640737342638693	1.10999792833052	670.503425310614	0	38.7042688998368						1342	28	7	NaN	NaN	NaN	7.3606E-19	1	36965	224.61	223.09	1	662300			16179	888	13622	14019	16179	16179		
QAFTPSSTMMEVFLQEK	17	Unmodified	_QAFTPSSTMMEVFLQEK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.470994	1972.92744	1.5448	0.0015254	2.0246	0.0019992	3.5693	0.0035246	987.974231430686	17.734	0.14188	17.734	17.69	17.832	0	210	52	1.18386433251387	0.0338454238417456	1.18386433251387	477.486141170641	0	13.6508216208893						351	17	4	NaN	NaN	NaN	0.0021876	1	31165	41.87	40.395	1	75984			16180	1729	13623	14020	16180	16180		
QAGEVTYADAHK	12	Unmodified	_QAGEVTYADAHK_			0	0	0	Q13247;Q08170	Q13247;Q08170	Q13247	SRSF6;SRSF4	Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	430.542203	1288.60478	-0.078745	-3.3903E-05	0.80695	0.00034743	0.72821	0.00031352	430.542289484948	2.6676	0.19507	2.6676	2.6321	2.8272	0	813	28	0.778007628350577	0.0184308879834895	0.778007628350577	472.42702148874	0	11.1917276851031						314	23	3	NaN	NaN	NaN	0.016102	1	12014	53.517	44.754	1	64027			16181	1645;1574	13624	14021	16181	16181		
QAGEVTYADAHK	12	Unmodified	_QAGEVTYADAHK_			0	0	0	Q13247;Q08170	Q13247;Q08170	Q13247	SRSF6;SRSF4	Serine/arginine-rich splicing factor 6;Serine/arginine-rich splicing factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.309666	1288.60478	3.0184	0.0019478	-1.8579	-0.0011989	1.1606	0.00074893	645.308329719458	2.6587	0.28375	2.6587	2.6321	2.9158	0	495	40	0.993446994398923	0.0262300352853753	0.993446994398923	402.16838378036	0	10.6184738156098						433	33	4	NaN	NaN	NaN	5.6572E-06	1	12015	117.99	91.039	1	100770			16182	1645;1574	13624	14021	16182	16182		
QAGSVGGLQWCGEPK	15	Unmodified	_QAGSVGGLQWCGEPK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.375014	1572.73548	1.9949	0.0015708	-1.7318	-0.0013636	0.26309	0.00020715	787.375244195142	9.1592	0.20396	9.1592	9.044	9.2479	0	420	37	1.04379886199097	0.0241305373401517	1.04379886199097	421.741267974767	0	9.74981271328136						333	24	3	NaN	NaN	NaN	0.059721	1	20744	42.446	33.184	1	63731			16183	2735	13625	14022	16183	16183		
QAGVFEPTIVK	11	Unmodified	_QAGVFEPTIVK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.834788	1187.65502	1.1449	0.00068104	0.57631	0.00034281	1.7212	0.0010239	594.835210770205	9.576	0.19508	9.576	9.514	9.709	0	555	88	0.953040030838688	0.0587078334097211	0.953040030838688	386.158370877098	0	23.7875855930959						504	23	2	NaN	NaN	NaN	0.0095472	1	9103	65.933	59.242	1	298750			16184	747	13626	14023	16184	16184		
QAHLCVLASNCDEPMYVK	18	Unmodified	_QAHLCVLASNCDEPMYVK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.98956	2133.96457	1.8749	0.0020023	-0.64725	-0.00069126	1.2276	0.0013111	1068.49082056403	9.6824	0.079814	9.6824	9.6558	9.7356	0	138	79	1.23157729878518	0.0516111149067147	1.23157729878518	496.468189842854	0	20.8052525966359						581	10	5	NaN	NaN	NaN	5.8259E-11	1	33790	128.41	121.89	1	125480			16185	837	13627	14024	16185	16185		
QAHLCVLASNCDEPMYVK	18	Unmodified	_QAHLCVLASNCDEPMYVK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.328798	2133.96457	1.7287	0.0012314	-0.26494	-0.00018873	1.4637	0.0010426	712.663172913413	9.6824	0.15076	9.6824	9.647	9.7977	0	594	133	0.926715457081489	0.089018589664869	0.926715457081489	560.358665006313	0	53.8270271464399						1157	18	6	NaN	NaN	NaN	1.1876E-19	1	33791	224.75	209.8	1	350010			16186	837	13627	14024	16186	16186		
QAHLCVLASNCDEPMYVK	18	Oxidation (M)	_QAHLCVLASNCDEPM(Oxidation (M))YVK_	QAHLCVLASNCDEPM(1)YVK	QAHLCVLASNCDEPM(65)YVK	0	1	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.660437	2149.95948	1.3629	0.00097809	0.5071	0.00036392	1.87	0.001342	717.995403906158	8.3963	0.10641	8.3963	8.352	8.4584	0	588	46	0.93076847747433	0.0303955552959029	0.93076847747433	562.782357672375	0	18.3784503731874						415	13	4	NaN	NaN	NaN	0.00014349	1	34012	65.173	63.993	1	85442			16187	837	13627	14025	16187	16187	281	
QAHTMDPQLR	10	Unmodified	_QAHTMDPQLR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.532873	1195.57679	-0.87603	-0.00035	0.92909	0.0003712	0.053057	2.1198E-05	399.533600334487	3.3237	0.21291	3.3237	3.2528	3.4657	4.4409E-16	849	31	0.753417699604308	0.0205116055659366	0.753417699604308	457.872086937551	0	12.4654513052291						369	25	3	NaN	NaN	NaN	0.049977	1	9309	20.234	16.889	1	121640			16188	1127	13628	14026	16188	16188		
QAIGIALETR	10	Unmodified	_QAIGIALETR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.31148	1070.60841	0.65299	0.00035021	-0.58955	-0.00031618	0.063441	3.4024E-05	536.312097474956	8.9642	0.16865	8.9642	8.8753	9.044	0	645	37	0.892219381832517	0.0243788876669334	0.892219381832517	361.968196612045	0	9.89037246207675						337	20	4	NaN	NaN	NaN	0.0019529	1	5982	53.517	35.18	1	104610			16189	2641	13629	14027	16189	16189		
QAILESPVSSCPPELANHPDAQHK	24	Unmodified	_QAILESPVSSCPPELANHPDAQHK_			0	0	0	Q9BUQ8	Q9BUQ8	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	657.073601	2624.2653	0.74919	0.00049227	1.5792	0.0010377	2.3284	0.0015299	657.325661709702	8.8133	0.10642	8.8133	8.7778	8.8842	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	739.710629541137	0	17.9640853240238						267	13	4	NaN	NaN	NaN	1.0453E-09	1	37336	112.67	112.12	1	60370			16190	2749	13630	14028	16190	16190		
QAIPLDENEGIYVQDVK	17	Unmodified	_QAIPLDENEGIYVQDVK_			0	0	0	Q14764	Q14764	Q14764	MVP	Major vault protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.991463	1929.96837	1.7089	0.0016508	-0.29395	-0.00028396	1.415	0.0013669	966.492773299724	12.174	0.13303	12.174	12.103	12.236	0	225	58	1.17390432875292	0.0378428307662209	1.17390432875292	473.542612478152	0	15.2654628709326						368	16	4	NaN	NaN	NaN	0.046366	1	30294	30.027	26.942	1	82230			16191	1774	13631	14029	16191	16191		
QALEGLGDLK	10	Unmodified	_QALEGLGDLK_			0	0	0	P12081;P49590	P12081;P49590	P12081	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.290214	1042.56587	-0.048634	-2.5401E-05	0.33212	0.00017346	0.28348	0.00014806	522.290322532996	9.3189	0.18625	9.3189	9.2656	9.4519	0	663	37	0.880024865079826	0.0243991920216602	0.880024865079826	357.14289952156	0	9.90199087591526						316	22	3	NaN	NaN	NaN	0.012437	1	5297	44.82	14.228	1	81715			16192	664;1138	13632	14030	16192	16192		
QALETVNDYNPLMK	14	Unmodified	_QALETVNDYNPLMK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.40598	1634.79741	1.5367	0.0012576	0.79392	0.00064975	2.3306	0.0019074	818.407474805867	12.05	0.26603	12.05	11.953	12.219	0	357	46	1.08596037261705	0.0300738688612157	1.08596037261705	438.630973425606	0	12.1471562921577						608	31	5	NaN	NaN	NaN	0.0016621	1	22619	77.358	49.769	1	190790			16193	1737	13633	14031	16193	16193		
QALPCVAESPTVHVEVHQR	19	Unmodified	_QALPCVAESPTVHVEVHQR_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	540.027194	2156.07967	0.51508	0.00027816	0.07261	3.9211E-05	0.58769	0.00031737	540.278241145448	7.997	0.16862	7.997	7.9261	8.0947	0	708	37	0.849494101904619	0.0244534611468455	0.849494101904619	684.83935664647	0	19.7137243943637						360	20	5	NaN	NaN	NaN	1.7827E-05	1	34126	75.012	65.101	1	108950			16194	1860	13634	14032	16194	16194		
QALQDLLSEYMGNAGR	16	Unmodified	_QALQDLLSEYMGNAGR_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.430518	1764.84648	1.3048	0.0011527	0.75404	0.00066615	2.0589	0.0018189	883.431506491461	18.089	0.079797	18.089	18.053	18.133	0	303	34	1.12200181823275	0.0219965339302892	1.12200181823275	452.90777015199	0	8.87913100633961						185	10	4	NaN	NaN	NaN	1.3553E-08	1	26261	89.382	85.4	1	36679			16195	959	13635	14033	16195	16195		
QALQESLVQILQPQR	15	Unmodified	_QALQESLVQILQPQR_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.994143	1749.97373	1.7723	0.0015525	0.46107	0.00040389	2.2333	0.0019564	875.9948108643	16.032	0.15961	16.032	15.952	16.111	0	276	46	1.13998907770044	0.0299622781618634	1.13998907770044	460.199000090141	0	12.0953882104961						405	19	3	NaN	NaN	NaN	0.0025631	1	25896	60	56.495	1	81540			16196	580	13636	14034	16196	16196		
QALTEFNTAIQEIVVTHWHR	20	Unmodified	_QALTEFNTAIQEIVVTHWHR_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	599.064471	2392.22878	-1.233	-0.00073864	0.0040949	2.4531E-06	-1.2289	-0.00073618	599.315507449392	17.583	0.079789	17.583	17.548	17.628	0	684	22	0.86578508874114	0.0142457083118959	0.86578508874114	697.532267690441	0	11.4772607577494						176	10	4	NaN	NaN	NaN	0.027646	1	36310	23.779	20.705	1	39179			16197	1951	13637	14035	16197	16197		
QAMTSIWNALVTDK	14	Unmodified	_QAMTSIWNALVTDK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.40324	1576.79193	0.42771	0.00033763	1.8373	0.0014503	2.265	0.001788	789.90694414022	16.794	0.15962	16.794	16.741	16.901	0	393	31	1.0618830335572	0.0200782861239661	1.0618830335572	429.03843229648	0	8.11234018210973						303	19	4	NaN	NaN	NaN	0.042758	1	20876	52.863	33.54	1	86184			16198	2013	13638	14036	16198	16198		
QAPELSLSSQDLELVTK	17	Unmodified	_QAPELSLSSQDLELVTK_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.493838	1856.97312	0.6604	0.00061384	-0.43614	-0.00040539	0.22426	0.00020845	929.494527794293	14.746	0.13303	14.746	14.684	14.817	0	138	43	1.23157729878518	0.0277943958750091	1.23157729878518	496.946766640952	0	11.2151589465385						468	16	3	NaN	NaN	NaN	1.3932E-07	1	28636	105.78	79.314	1	149010			16199	70	13639	14037	16199	16199		
QAPQTIHLPSGEILDVFDAAER	22	Unmodified	_QAPQTIHLPSGEILDVFDAAER_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.079923	2406.21794	0.0081937	6.5802E-06	0.16449	0.0001321	0.17269	0.00013868	803.414190094038	17.3	0.097534	17.3	17.264	17.362	0	516	34	0.979317271586824	0.0222192115744939	0.979317271586824	591.732410096087	0	13.42550366145						328	12	5	NaN	NaN	NaN	5.6907E-05	1	36378	50.519	49.708	1	91827			16200	793	13640	14038	16200	16200		
QAQEYEALLNIK	12	Unmodified	_QAQEYEALLNIK_			0	0	0	CON__P05784;P05783	CON__P05784;P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.377549	1418.74054	2.1036	0.0014943	-1.5295	-0.0010865	0.57411	0.00040783	710.377047539743	12.715	0.23944	12.715	12.644	12.884	0	468	91	1.01159370163332	0.0604097440648067	1.01159370163332	409.115922983452	0	24.431338550609						901	28	5	NaN	NaN	NaN	2.3635E-23	1	16067	207.88	178.57	1	400630		+	16201	536;27	13641	14039	16201	16201		
QAQIEVVPSASALIIK	16	Unmodified	_QAQIEVVPSASALIIK_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.32945	1665.96652	-0.27007	-0.00015025	-0.98446	-0.00054768	-1.2545	-0.00069793	556.329089910726	14.719	0.12415	14.719	14.648	14.772	0	648	31	0.890187667287968	0.0203185572291886	0.890187667287968	539.246956288176	0	12.3083261481117						340	15	5	NaN	NaN	NaN	0.0025446	1	23523	80.623	69.652	1	146400			16202	900	13642	14040	16202	16202		
QAQIEVVPSASALIIK	16	Unmodified	_QAQIEVVPSASALIIK_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.990537	1665.96652	1.7165	0.0014316	0.28462	0.00023737	2.0012	0.001669	833.99061328044	14.71	0.10643	14.71	14.666	14.772	0	198	64	1.1918274123006	0.0418262905820341	1.1918274123006	481.316112536469	0	16.8914285549994						458	13	4	NaN	NaN	NaN	5.3404E-07	1	23524	95.656	86.394	1	133280			16203	900	13642	14040	16203	16203		
QAQIEVVPSASALIIK	16	Unmodified	_QAQIEVVPSASALIIK_			0	0	0	P30050	P30050	P30050	RPL12	60S ribosomal protein L12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.990537	1665.96652	2.3608	0.0019689	1.1241	0.00093752	3.485	0.0029064	833.991640772529	14.71	0.23943	14.71	14.648	14.888	0	324	91	1.1079963157843	0.0600112492236662	1.1079963157843	447.461159406537	0	24.2353722413315						1197	28	5	NaN	NaN	NaN	1.0977E-06	1	23525	115.05	101.88	1	1030600			16204	900	13642	14040	16204	16204		
QAQILASEAEK	11	Unmodified	_QAQILASEAEK_			0	0	0	Q9UJZ1	Q9UJZ1	Q9UJZ1	STOML2	Stomatin-like protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.31696	1186.61937	1.73	0.0010282	0.097951	5.8214E-05	1.828	0.0010864	594.317313919323	4.7337	0.12415	4.7337	4.7071	4.8312	0	573	31	0.940896116921038	0.020242660886354	0.940896116921038	381.241651313376	0	8.20212276839266						167	15	3	NaN	NaN	NaN	0.0036824	1	9065	76.85	47.541	1	38618			16205	3256	13643	14041	16205	16205		
QASIQHIQNAIDTEK	15	Unmodified	_QASIQHIQNAIDTEK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.436658	1694.85876	2.7523	0.0023351	-1.5956	-0.0013538	1.1566	0.00098134	848.435777412806	6.8619	0.097507	6.8619	6.8264	6.9239	0	330	55	1.10399226369747	0.036036482449755	1.10399226369747	445.781445831257	0	14.5511846209157						421	12	4	NaN	NaN	NaN	0.00024207	1	24344	75.012	56.914	1	121490			16206	830	13644	14042	16206	16206		
QASIQHIQNAIDTEK	15	Unmodified	_QASIQHIQNAIDTEK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.960197	1694.85876	1.6191	0.00091634	1.0395	0.0005883	2.6586	0.0015046	566.294951284069	6.853	0.18616	6.853	6.7998	6.986	0	597	31	0.924688525662974	0.0202707209833614	0.924688525662974	560.067774273588	0	12.2776235121253						374	22	4	NaN	NaN	NaN	5.883E-05	1	24346	97.594	65.046	1	155860			16207	830	13644	14042	16207	16207		
QASLADCLNHAVGFASR	17	Unmodified	_QASLADCLNHAVGFASR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.296815	1815.86862	-0.14225	-8.6246E-05	-1.4701	-0.0008913	-1.6123	-0.00097755	606.295915952938	12.724	0.088702	12.724	12.68	12.768	0	696	43	0.857641857947968	0.028505272317873	0.857641857947968	519.17823656065	0	17.2558240686665						242	11	2	NaN	NaN	NaN	0.03903	1	27622	19.006	17.531	1	91663			16208	209	13645	14043	16208	16208		
QASLADCLNHAVGFASR	17	Unmodified	_QASLADCLNHAVGFASR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.941584	1815.86862	1.8102	0.0016453	-0.16069	-0.00014606	1.6495	0.0014993	908.942150826592	12.724	0.088678	12.724	12.689	12.777	0	240	40	1.16393748060522	0.0259244956409976	1.16393748060522	469.732625088142	0	10.46240162762						234	11	4	NaN	NaN	NaN	0.027259	1	27624	31.722	27.986	1	40922			16209	209	13645	14043	16209	16209		
QASPNIVIALAGNK	14	Unmodified	_QASPNIVIALAGNK_			0	0	0	P51148	P51148	P51148	RAB5C	Ras-related protein Rab-5C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.401358	1394.78816	1.0588	0.00073947	0.60715	0.00042404	1.666	0.0011635	698.402064283325	12.343	0.1596	12.343	12.263	12.423	0	480	34	1.00353128488872	0.0221793099010968	1.00353128488872	405.922534556127	0	8.97140111656552						352	19	4	NaN	NaN	NaN	0.0017666	1	15296	72.922	69.577	1	158790			16210	1179	13646	14044	16210	16210		
QASPNIVIALSGNK	14	Unmodified	_QASPNIVIALSGNK_			0	0	0	P20339	P20339	P20339	RAB5A	Ras-related protein Rab-5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.398815	1410.78308	1.2409	0.00087656	-0.98396	-0.00069506	0.25694	0.0001815	706.398233651119	11.536	0.10645	11.536	11.491	11.598	0	468	31	1.01159370163332	0.0201504747888646	1.01159370163332	409.1381983369	0	8.14984211293307						206	13	3	NaN	NaN	NaN	0.032389	1	15790	51.454	46.303	1	59467			16211	779	13647	14045	16211	16211		
QASVADYEETVK	12	Unmodified	_QASVADYEETVK_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.322439	1338.63033	1.997	0.0013387	-0.60217	-0.00040365	1.3949	0.00093502	670.322114688123	6.4185	0.17733	6.4185	6.3831	6.5604	0	471	43	1.00957851518677	0.0282223642455827	1.00957851518677	408.536735455714	0	11.4204813021396						295	21	2	NaN	NaN	NaN	0.00023161	1	13550	85.821	57.725	1	149960			16212	1132	13648	14046	16212	16212		
QATLIPDEVFDAVK	14	Unmodified	_QATLIPDEVFDAVK_			0	0	0	Q9H9A6	Q9H9A6	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.411588	1544.80862	1.5687	0.0012132	2.6574	0.0020552	4.226	0.0032685	773.414930161897	16.111	0.10644	16.111	16.058	16.165	0	360	46	1.08395544855938	0.0300821596276293	1.08395544855938	438.035398161946	0	12.1564505142463						303	13	3	NaN	NaN	NaN	0.0025921	1	19891	64.266	51.091	1	78633			16213	2932	13649	14047	16213	16213		
QATTIIADNIIFLSDQTK	18	Unmodified	_QATTIIADNIIFLSDQTK_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.693117	1991.05752	0.21816	0.00014501	-0.18595	-0.0001236	0.03221	2.141E-05	665.027530163621	17.477	0.12413	17.477	17.433	17.557	0	576	31	0.938871150116794	0.0202510727946275	0.938871150116794	567.972025608053	0	12.2509279728852						344	15	5	NaN	NaN	NaN	0.0015279	1	31481	82.437	81.068	1	106810			16214	1546	13650	14048	16214	16214		
QATTIIADNIIFLSDQTK	18	Unmodified	_QATTIIADNIIFLSDQTK_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.536037	1991.05752	1.5302	0.0015249	-0.074084	-7.3827E-05	1.4561	0.001451	997.038242851995	17.486	0.29261	17.486	17.424	17.716	0	171	58	1.20972836110953	0.0377753473176443	1.20972836110953	487.886807759273	0	15.2349024849674						1329	34	7	NaN	NaN	NaN	4.4393E-27	1	31482	228.97	204.05	1	649870			16215	1546	13650	14048	16215	16215		
QATVGDINTERPGMLDFTGK	20	Unmodified	_QATVGDINTERPGMLDFTGK_			0	0	1	P07108	P07108	P07108	DBI	Acyl-CoA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.356399	2149.04737	1.192	0.00085505	0.092259	6.6183E-05	1.2842	0.00092124	717.690948136566	11.562	0.18626	11.562	11.509	11.695	0	567	55	0.944945209309785	0.0364468926238521	0.944945209309785	571.355771664583	0	22.037407306491						875	22	7	NaN	NaN	NaN	2.3075E-16	1	34006	168.78	136.02	1	609770			16216	552	13651	14049	16216	16216		
QATVGDINTERPGMLDFTGK	20	Oxidation (M)	_QATVGDINTERPGM(Oxidation (M))LDFTGK_	QATVGDINTERPGM(1)LDFTGK	QATVGDINTERPGM(58)LDFTGK	0	1	1	P07108	P07108	P07108	DBI	Acyl-CoA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.688037	2165.04228	1.7656	0.0012759	-0.017555	-1.2687E-05	1.748	0.0012633	723.02279106518	9.7889	0.079788	9.7889	9.7534	9.8332	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	573.776156341095	0	13.4601375376093						278	10	5	NaN	NaN	NaN	0.022374	1	34247	57.62	57.497	1	71949			16217	552	13651	14050	16217	16217	127	
QATYGYYLGNPAEFHDSSDHHTFK	24	Unmodified	_QATYGYYLGNPAEFHDSSDHHTFK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	697.062391	2784.22046	1.0662	0.00074318	1.1642	0.0008115	2.2303	0.0015547	697.313926736521	9.2479	0.24832	9.2479	9.177	9.4253	0	561	49	0.948993180460448	0.0323882634734276	0.948993180460448	763.948775864798	0	26.0728683223058						1012	29	6	NaN	NaN	NaN	4.9795E-18	1	37849	188.85	184.69	1	463800			16218	1831	13652	14051	16218	16218		
QATYGYYLGNPAEFHDSSDHHTFK	24	Unmodified	_QATYGYYLGNPAEFHDSSDHHTFK_			0	0	0	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	929.080762	2784.22046	1.5843	0.001472	1.3493	0.0012536	2.9336	0.0027255	929.416079377908	9.2568	0.12418	9.2568	9.2125	9.3366	0	390	61	1.06389100039157	0.0401842911414492	1.06389100039157	642.333135956631	0	24.2616036187742						535	15	5	NaN	NaN	NaN	2.5658E-06	1	37850	33.63	33.353	1	96790			16219	1831	13652	14051	16219	16219		
QAVDFLSNEGHIYSTVDDDHFK	22	Unmodified	_QAVDFLSNEGHIYSTVDDDHFK_			0	0	0	P15927	P15927	P15927	RPA2	Replication protein A 32 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	635.044938	2536.15065	0.78583	0.00049904	0.18413	0.00011693	0.96996	0.00061597	635.295732630842	12.352	0.11526	12.352	12.307	12.423	0	585	25	0.932794566565362	0.0162075912580637	0.932794566565362	751.27336830644	0	13.0536048482936						370	14	6	NaN	NaN	NaN	0.00041899	1	36975	59.171	54.799	1	151980			16220	719	13653	14052	16220	16220		
QAVDFLSNEGHIYSTVDDDHFK	22	Unmodified	_QAVDFLSNEGHIYSTVDDDHFK_			0	0	0	P15927	P15927	P15927	RPA2	Replication protein A 32 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	846.390825	2536.15065	1.5351	0.0012993	0.54855	0.00046429	2.0837	0.0017636	846.725744494039	12.352	0.088658	12.352	12.316	12.405	0	402	49	1.05585747106793	0.0321474274065014	1.05585747106793	637.792614092588	0	19.4187116384244						351	11	3	NaN	NaN	NaN	5.9597E-06	1	36976	50.519	46.945	1	135990			16221	719	13653	14052	16221	16221		
QAVDQISSGFFSPK	14	Unmodified	_QAVDQISSGFFSPK_			0	0	0	P11216	P11216	P11216	PYGB	Glycogen phosphorylase, brain form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.880456	1509.74636	1.3445	0.0010163	0.044912	3.3948E-05	1.3895	0.0010503	755.880634528285	12.254	0.13303	12.254	12.174	12.307	0	378	46	1.07192009927972	0.0300987514489623	1.07192009927972	433.261169120553	0	12.1656644470135						315	16	3	NaN	NaN	NaN	0.00033072	1	18790	93.772	77.484	1	70445			16222	646	13654	14053	16222	16222		
QAVDVSPLR	9	Unmodified	_QAVDVSPLR_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.777274	983.539994	0.16976	8.3655E-05	1.0044	0.00049495	1.1742	0.0005786	492.778062281683	6.4895	0.31036	6.4895	6.4185	6.7289	0	729	61	0.835224628594324	0.0408011186688414	0.835224628594324	339.226491931717	0	16.5713747883785						987	36	4	NaN	NaN	NaN	7.2609E-05	1	3917	129.72	114.22	1	641150			16223	1090	13655	14054	16223	16223		
QAVLGAGLPISTPCTTINK	19	Unmodified	_QAVLGAGLPISTPCTTINK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.027325	1940.0401	2.2537	0.0021884	0.22578	0.00021924	2.4795	0.0024077	971.529371264427	13.442	0.12416	13.442	13.38	13.504	0	219	64	1.17788915118882	0.0418262905820341	1.17788915118882	475.13244270647	0	16.8717299022027						840	15	5	NaN	NaN	NaN	5.9793E-09	1	30519	120.21	102.79	1	280220			16224	832	13656	14055	16224	16224		
QAVQILDELAEK	12	Unmodified	_QAVQILDELAEK_			0	0	0	Q99961	Q99961	Q99961	SH3GL1	Endophilin-A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.872099	1355.72965	1.0915	0.00074096	0.68427	0.00046453	1.7757	0.0012055	678.873194922886	13.434	0.19511	13.434	13.318	13.513	0	480	34	1.00353128488872	0.0221762449945386	1.00353128488872	406.03731162308	0	8.97269774751038						344	23	4	NaN	NaN	NaN	3.244E-05	1	14069	110.88	99.529	1	104060			16225	2684	13657	14056	16225	16225		
QAVSMFLGAVEEAK	14	Unmodified	_QAVSMFLGAVEEAK_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.379234	1478.74392	1.3779	0.0010201	0.62232	0.00046075	2.0002	0.0014809	740.38048693236	14.551	0.25715	14.551	14.427	14.684	1.7764E-15	426	40	1.03977710643793	0.0261432202901304	1.03977710643793	420.349271486985	0	10.5688839802669						479	30	5	NaN	NaN	NaN	0.013064	1	17863	42.446	21.358	1	109920			16226	1132	13658	14057	16226	16226		
QAVTPPGLQEAINDLVK	17	Unmodified	_QAVTPPGLQEAINDLVK_			0	0	0	O95394	O95394	O95394	PGM3	Phosphoacetylglucosamine mutase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.993808	1791.97306	1.7503	0.00157	-1.1437	-0.0010259	0.6066	0.00054412	896.993221686374	17.743	0.19506	17.743	17.628	17.823	0	276	43	1.13998907770044	0.0279667154484231	1.13998907770044	460.114219828309	0	11.2877252172173						434	23	3	NaN	NaN	NaN	0.027638	1	27033	24.922	21.633	1	89207			16227	431	13659	14058	16227	16227		
QAWATDDVAQIYDK	14	Unmodified	_QAWATDDVAQIYDK_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.386102	1622.75765	1.8625	0.0015131	2.3343	0.0018964	4.1969	0.0034095	812.388386704442	11.527	0.1597	11.527	11.429	11.589	0	372	52	1.07593298845566	0.0341072184274172	1.07593298845566	434.607892869952	0	13.7771278429445						354	19	4	NaN	NaN	NaN	0.0025383	1	22261	80.623	71.646	1	73620			16228	10	13660	14059	16228	16228		
QAWFIENEEQEYVQTVK	17	Unmodified	_QAWFIENEEQEYVQTVK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.344376	2140.0113	0.84873	0.00060628	-1.0732	-0.00076667	-0.22452	-0.00016038	714.677619392025	14.515	0.062078	14.515	14.48	14.542	0	591	22	0.928742107665821	0.0141845894763903	0.928742107665821	561.57387477413	0	8.57686413546685						137	8	4	NaN	NaN	NaN	0.027255	1	33875	34.472	33.953	1	26796			16229	506	13661	14060	16229	16229		
QAWFIENEEQEYVQTVK	17	Unmodified	_QAWFIENEEQEYVQTVK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.01293	2140.0113	2.0509	0.0021965	0.010608	1.1361E-05	2.0615	0.0022079	1071.51432752041	14.515	0.33697	14.515	14.373	14.71	0	132	88	1.23554629282893	0.0575544157414687	1.23554629282893	498.059051101806	0	23.2006666664685						1550	39	6	NaN	NaN	NaN	2.3523E-34	1	33876	245.56	210.11	1	626660			16230	506	13661	14060	16230	16230		
QCCGTDGVEANYIK	14	Unmodified	_QCCGTDGVEANYIK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.847972	1613.68139	2.6839	0.0021682	-1.5528	-0.0012544	1.1311	0.00091375	807.847147584098	6.4185	0.13299	6.4185	6.3831	6.5161	-8.8818E-16	426	46	1.03977710643793	0.030165256192159	1.03977710643793	420.023244674074	0	12.1854084916917						428	16	4	NaN	NaN	NaN	1.4123E-05	1	21996	97.594	85.576	1	111770			16231	343	13662	14061	16231	16231		
QCELAPTLLTAMEGK	15	Unmodified	_QCELAPTLLTAMEGK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.415491	1660.81643	2.2508	0.0018714	0.41987	0.00034909	2.6707	0.0022205	831.416115428033	15.624	0.16847	15.624	15.544	15.712	-1.7764E-15	345	34	1.09397730668811	0.0220450526465417	1.09397730668811	441.81092555154	0	8.90305955530914						344	20	4	NaN	NaN	NaN	4.5764E-06	1	23366	100.07	70.316	1	79411			16232	2013	13663	14062	16232	16232		
QCFLVLR	7	Unmodified	_QCFLVLR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.260205	934.505857	0.04838	2.2654E-05	5.3297	0.0024957	5.378	0.0025183	468.263024681124	10.764	0.15073	10.764	10.711	10.862	0	684	52	0.86578508874114	0.0346111454231356	0.86578508874114	351.89293442909	0	14.0674835883443						296	18	3	NaN	NaN	NaN	0.068224	1	2968	23.309	0	1	64689			16233	705	13664	14063	16233	16233		
QCFVVTEK	8	Unmodified	_QCFVVTEK_			0	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.75241	1009.49027	-0.03613	-1.8273E-05	0.83433	0.00042197	0.7982	0.00040369	505.752998691221	5.2835	0.18629	5.2835	5.2391	5.4254	0	699	28	0.85560534332665	0.0183286333597692	0.85560534332665	347.380896757503	0	7.44153498165491						208	22	3	NaN	NaN	NaN	0.046909	1	4496	29.102	14.566	1	57011			16234	3078	13665	14064	16234	16234		
QCFYEDIAQGTK	12	Unmodified	_QCFYEDIAQGTK_			0	0	0	Q9Y3B3	Q9Y3B3	Q9Y3B3	TMED7	Transmembrane emp24 domain-containing protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.329741	1458.64493	1.5986	0.0011675	1.7249	0.0012598	3.3235	0.0024273	730.330841827953	9.1326	0.08867	9.1326	9.0972	9.1858	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.522034107369	0	8.13824794335994						289	11	4	NaN	NaN	NaN	3.7147E-05	1	17223	108.4	106.6	1	113260			16235	3379	13666	14065	16235	16235		
QCLDLLR	7	Unmodified	_QCLDLLR_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.247295	916.480036	-0.33331	-0.00015307	-1.3013	-0.00059762	-1.6346	-0.0007507	459.246894188407	8.9464	0.14203	8.9464	8.8931	9.0351	0	702	34	0.853568545818287	0.0224047758340703	0.853568545818287	347.026488954516	0	9.10887676402922						308	17	3	NaN	NaN	NaN	0.0071618	1	2639	72.355	25.552	1	95583			16236	1728	13667	14066	16236	16236		
QCLEDSDAGASNEYDSSPAAWNK	23	Unmodified	_QCLEDSDAGASNEYDSSPAAWNK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1258.01934	2514.02413	1.2595	0.0015845	-1.9005	-0.0023908	-0.64095	-0.00080632	1258.51853256561	8.9375	0.05323	8.9375	8.9109	8.9642	0	78	58	1.27121832677567	0.0376254562668012	1.27121832677567	511.946839398405	0	15.15257687133						126	7	2	NaN	NaN	NaN	2.5995E-10	1	36895	135.5	135.44	1	14547			16237	1076	13668	14067	16237	16237		
QCLPSLDLSCK	11	Unmodified	_QCLPSLDLSCK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.817955	1319.62136	1.0674	0.00070535	-1.2972	-0.00085723	-0.22984	-0.00015188	660.817807648833	10.649	0.16851	10.649	10.605	10.773	0	552	61	0.955063035883597	0.0404293325417993	0.955063035883597	386.533349464942	0	16.3625695235453						461	20	4	NaN	NaN	NaN	0.0041661	1	12953	60.547	46.553	1	162410			16238	1465	13669	14068	16238	16238		
QCSDSSAMESLTK	13	Unmodified	_QCSDSSAMESLTK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.308148	1442.60174	1.6253	0.001174	-1.9481	-0.0014071	-0.32276	-0.00023313	722.307430741245	5.9041	0.17741	5.9041	5.8421	6.0195	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.159702998055	0	8.97096128579426						305	21	3	NaN	NaN	NaN	0.0056147	1	16737	51.454	49.951	1	107080			16239	2420	13670	14069	16239	16239		
QCVENADLPEGEK	13	Unmodified	_QCVENADLPEGEK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.835388	1487.65622	2.6229	0.0019536	-0.126	-9.3846E-05	2.4969	0.0018598	744.835006380157	5.0085	0.15959	5.0085	4.9731	5.1327	0	465	64	1.01360860968299	0.0423130912523418	1.01360860968299	409.747412275079	0	17.1049056611988						586	19	4	NaN	NaN	NaN	1.8266E-11	1	18158	180.81	166.05	1	169370			16240	2641	13671	14070	16240	16240		
QDAQILYK	8	Unmodified	_QDAQILYK_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.766374	977.518196	0.35162	0.00017221	0.81838	0.00040081	1.17	0.00057303	489.765922298893	5.31	0.24831	5.31	5.2036	5.4519	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	345.878895209279	0	8.27488108161066						332	29	2	NaN	NaN	NaN	0.0034028	1	3791	82.716	53.407	1	177790			16241	669	13672	14071	16241	16241		
QDAQSLHGDIPQK	13	Unmodified	_QDAQSLHGDIPQK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.860054	1435.70556	3.4554	0.0024839	-2.8681	-0.0020618	0.58724	0.00042215	718.857964262811	3.9356	0.15075	3.9356	3.9002	4.0509	0	471	85	1.00957851518677	0.0564603712879649	1.00957851518677	408.254349702191	0	22.8315002918302						566	18	3	NaN	NaN	NaN	1.4002E-07	1	16560	150.44	142.89	1	165350			16242	3011	13673	14072	16242	16242		
QDAQSLHGDIPQK	13	Unmodified	_QDAQSLHGDIPQK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.575795	1435.70556	1.9474	0.00093395	1.2402	0.00059478	3.1877	0.0015287	479.576514408459	3.9356	0.1862	3.9356	3.9002	4.0864	0	684	34	0.86578508874114	0.0223892235225879	0.86578508874114	525.157000274117	0	13.5805728424879						411	22	4	NaN	NaN	NaN	0.042118	1	16561	47.334	40.644	1	194480			16243	3011	13673	14072	16243	16243		
QDAVDYLTWTFLYR	14	Unmodified	_QDAVDYLTWTFLYR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.629788	1789.86754	-0.91434	-0.00054644	1.5715	0.00093916	0.65714	0.00039272	597.630509020358	8.2454	0.097602	8.2454	8.2011	8.2987	0	759	43	0.814815566123307	0.0285965426373002	0.814815566123307	493.30733971344	0	17.3129784946617						224	12	3	NaN	NaN	NaN	0.063886	1	26962	21.15	12.776	1	58408			16244	350	13674	14073	16244	16244		
QDEHGYISR	9	Unmodified	_QDEHGYISR_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	368.840472	1103.49959	0.4951	0.00018261	0.73319	0.00027043	1.2283	0.00045304	368.840738582587	2.3749	0.46112	2.3749	2.3395	2.8006	0	849	28	0.753417699604308	0.0184591580359084	0.753417699604308	458.306957094212	0	11.2287786103266						665	53	3	NaN	NaN	NaN	0.019188	1	6800	60.589	51.196	1	254150			16245	516	13675	14074	16245	16245		
QDEHGYISR	9	Unmodified	_QDEHGYISR_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.757069	1103.49959	1.8704	0.0010339	0.014542	8.0384E-06	1.885	0.0010419	552.757806839047	2.3838	0.37241	2.3838	2.3306	2.703	0	678	55	0.869855008346864	0.0366292905732287	0.869855008346864	352.761458549741	0	14.8546618048578						597	43	4	NaN	NaN	NaN	0.0013073	1	6801	78.816	46.864	1	199830			16246	516	13675	14074	16246	16246		
QDENDDDDDWNPCK	14	Unmodified	_QDENDDDDDWNPCK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.315745	1764.61694	2.7194	0.0024021	-1.7909	-0.001582	0.92842	0.00082009	883.314311539934	6.3476	0.24831	6.3476	6.25	6.4983	0	402	46	1.05585747106793	0.0301319762986474	1.05585747106793	426.20835317256	0	12.1630999902778						761	29	4	NaN	NaN	NaN	3.4237E-06	1	26252	105.94	105.94	1	231470			16247	1780	13676	14075	16247	16247		
QDEQVGLPGK	10	Unmodified	_QDEQVGLPGK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.77747	1069.54039	1.2315	0.00065979	-0.3214	-0.0001722	0.91006	0.00048759	535.777393633213	4.9287	0.22168	4.9287	4.7869	5.0085	0	678	55	0.869855008346864	0.0366292905732287	0.869855008346864	352.899575694663	0	14.8604778695881						469	26	2	NaN	NaN	NaN	3.857E-05	1	5946	74.269	68.403	1	153820			16248	652	13677	14076	16248	16248		
QDFDEDDILK	10	Unmodified	_QDFDEDDILK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.282783	1236.55101	1.3303	0.00082384	1.9171	0.0011872	3.2474	0.0020111	619.283861241749	10.339	0.13301	10.339	10.294	10.427	0	537	22	0.965173861991602	0.0141492814478524	0.965173861991602	390.897193142001	0	5.73048506673081						190	16	3	NaN	NaN	NaN	0.0084362	1	10510	39.039	36.44	1	52584			16249	288	13678	14077	16249	16249		
QDFETLSQETK	11	Unmodified	_QDFETLSQETK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.314614	1324.61468	1.4525	0.00096345	1.5164	0.0010058	2.9689	0.0019693	663.315932956936	6.8707	0.12413	6.8707	6.8175	6.9417	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	395.516674959413	0	6.53933875569311						171	15	2	NaN	NaN	NaN	0.0047111	1	13126	74.849	66.666	1	47133			16250	1810	13679	14078	16250	16250		
QDFVQHFSQIVR	12	Unmodified	_QDFVQHFSQIVR_			0	0	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.92828	1502.76301	-0.89563	-0.00044954	-0.4831	-0.00024248	-1.3787	-0.00069202	501.927905885732	11.58	0.20399	11.58	11.527	11.731	0	732	40	0.833184998970724	0.0265188764600823	0.833184998970724	505.167886364442	0	16.0786437425648						600	24	5	NaN	NaN	NaN	0.00030717	1	18598	129.28	122.53	1	360550			16251	695	13680	14079	16251	16251		
QDFVQHFSQIVR	12	Unmodified	_QDFVQHFSQIVR_			0	0	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.388782	1502.76301	1.4546	0.0010944	1.6719	0.001258	3.1265	0.0023524	752.390064178083	11.58	0.18628	11.58	11.518	11.704	0	366	55	1.07994477139643	0.0361160163121792	1.07994477139643	436.523095004068	0	14.5984087680931						549	22	4	NaN	NaN	NaN	4.7759E-05	1	18601	127.03	115.67	1	203920			16252	695	13680	14079	16252	16252		
QDGQFSVLFTK	11	Unmodified	_QDGQFSVLFTK_			0	0	0	CON__P12763	CON__P12763	CON__P12763			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.327328	1268.6401	1.2263	0.00077911	-3.7788	-0.0024007	-2.5524	-0.0016216	635.324889429641	12.697	0.26605	12.697	12.618	12.884	0	558	49	0.951016745717027	0.0323837789841732	0.951016745717027	385.055976904563	0	13.1118276400178						417	31	2	NaN	NaN	NaN	0.0037324	1	11469	54.584	39.821	1	167380		+	16253	29	13681	14080	16253	16253		
QDHPSSMGVYGQESGGFSGPGENR	24	Unmodified	_QDHPSSMGVYGQESGGFSGPGENR_			0	0	0	Q01844	Q01844	Q01844	EWSR1	RNA-binding protein EWS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.355898	2479.04586	1.9958	0.0016513	-0.93949	-0.0007773	1.0563	0.00087397	827.689415192502	7.2432	0.15961	7.2432	7.1989	7.3585	0	579	49	0.936845902828289	0.0324106998985512	0.936845902828289	565.974497561407	0	19.5801994066662						565	19	5	NaN	NaN	NaN	3.0102E-18	1	36727	155.75	145.84	1	122060			16254	1523	13682	14081	16254	16254		
QDIAFAYQR	9	Unmodified	_QDIAFAYQR_			0	0	0	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.28018	1110.54581	1.3339	0.00074204	1.3864	0.0007712	2.7203	0.0015132	556.281050165246	7.8729	0.23057	7.8729	7.8108	8.0414	0	618	73	0.910492137470517	0.048690231972321	0.910492137470517	369.212557349099	0	19.7443166443638						816	27	4	NaN	NaN	NaN	4.6415E-13	1	6997	214.81	181.41	1	745030			16255	558	13683	14082	16255	16255		
QDILDEMR	8	Unmodified	_QDILDEMR_			0	0	0	Q8N8S7	Q8N8S7	Q8N8S7	ENAH	Protein enabled homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.244949	1018.47534	0.26239	0.00013388	2.0996	0.0010713	2.362	0.0012052	510.245952295577	10.161	0.12414	10.161	10.117	10.241	1.7764E-15	657	31	0.884090832094921	0.020329837424522	0.884090832094921	358.903583368216	0	8.25305640107666						166	15	2	NaN	NaN	NaN	0.0092986	1	4696	77.072	49.335	1	53628			16256	2273	13684	14083	16256	16256		
QDIVLTTYNILTHDYGTK	18	Unmodified	_QDIVLTTYNILTHDYGTK_			0	0	0	Q14527	Q14527	Q14527	HLTF	Helicase-like transcription factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.028388	2094.06334	0.19284	0.0001348	1.3789	0.00096392	1.5718	0.0010987	699.363798887656	17.477	0.10641	17.477	17.433	17.539	0	531	52	0.969216233931596	0.0343387884231721	0.969216233931596	586.129815770466	0	20.7662511497671						245	13	3	NaN	NaN	NaN	7.2153E-07	1	33242	104	101.1	1	48484			16257	1754	13685	14084	16257	16257		
QDLADVVQVCEGK	13	Unmodified	_QDLADVVQVCEGK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.856123	1459.69769	1.3304	0.00097236	0.091621	6.6962E-05	1.4221	0.0010393	730.856276268758	10.206	0.18621	10.206	10.152	10.339	0	462	43	1.01562323939346	0.0282028744341156	1.01562323939346	410.634285951315	0	11.4029167075223						448	22	3	NaN	NaN	NaN	8.0152E-06	1	17250	106.11	73.564	1	150570			16258	1737	13686	14085	16258	16258		
QDLAQLMNSSGSHK	14	Unmodified	_QDLAQLMNSSGSHK_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.91219	1514.71474	-0.68035	-0.0003442	2.6298	0.0013305	1.9495	0.00098626	505.913707021665	7.3408	0.14187	7.3408	7.2698	7.4117	0	759	25	0.814815566123307	0.0163386061083168	0.814815566123307	493.994784802688	0	9.90553757687098						183	17	3	NaN	NaN	NaN	0.038574	1	18957	36.952	30.688	1	36584			16259	2731	13687	14086	16259	16259		
QDLAYER	7	Unmodified	_QDLAYER_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.719424	893.424296	0.22896	0.00010251	-1.4866	-0.0006656	-1.2577	-0.00056309	447.718339867366	3.5633	0.25714	3.5633	3.5189	3.776	0	756	37	0.816857749704129	0.0245147306165753	0.816857749704129	332.22787853978	0	9.97049602414734						248	30	2	NaN	NaN	NaN	0.015314	1	2223	75.243	21.187	1	76358			16260	3329	13688	14087	16260	16260		
QDLEAEVSQLTGEVAK	16	Unmodified	_QDLEAEVSQLTGEVAK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.936156	1715.85776	2.2055	0.0018944	1.7377	0.0014926	3.9432	0.003387	859.439591038604	15.792	0.29261	15.792	15.65	15.943	0	300	55	1.12400150285141	0.0359968140029667	1.12400150285141	453.815918352854	0	14.5337236321229						498	34	3	NaN	NaN	NaN	0.0013594	1	24936	76.563	59.571	1	236530			16261	270	13689	14088	16261	16261		
QDLESSVQSSPHDSIAIIPPPQSTK	25	Unmodified	_QDLESSVQSSPHDSIAIIPPPQSTK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	887.783723	2660.32934	2.4727	0.0021952	0.11701	0.00010388	2.5897	0.0022991	888.118128119649	11.004	0.15962	11.004	10.95	11.11	0	417	100	1.04580932352505	0.0664461448776935	1.04580932352505	631.562290510927	0	40.1267023639916						1053	19	4	NaN	NaN	NaN	1.5436E-13	1	37476	107.15	100.3	1	200160			16262	1489	13690	14089	16262	16262		
QDLFEPSSANTEDK	14	Unmodified	_QDLFEPSSANTEDK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.857374	1579.7002	2.5293	0.0020003	0.54906	0.00043423	3.0784	0.0024346	790.858153797593	7.3851	0.17733	7.3851	7.3053	7.4826	0	414	40	1.04781950764076	0.0261323987291064	1.04781950764076	423.349487923976	0	10.5582474266982						466	21	4	NaN	NaN	NaN	1.4244E-05	1	20953	115.05	73.256	1	124440			16263	1962	13691	14090	16263	16263		
QDLLAYLQR	9	Unmodified	_QDLLAYLQR_			0	0	0	P26232;P35221	P26232;P35221	P35221	CTNNA2;CTNNA1	Catenin alpha-2;Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.31148	1118.60841	-0.016787	-9.4061E-06	-2.4702	-0.0013841	-2.487	-0.0013935	560.310376765164	14.072	0.13301	14.072	14.028	14.161	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	367.534282241287	0	7.40705393182532						244	16	3	NaN	NaN	NaN	2.3143E-06	1	7237	150.88	103.53	1	68193			16264	959;848	13692	14091	16264	16264		
QDLLTAAPASEIAEGLNLHTIR	22	Unmodified	_QDLLTAAPASEIAEGLNLHTIR_			0	0	0	P36405	P36405	P36405	ARL3	ADP-ribosylation factor-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.420168	2332.23867	1.0107	0.00078674	-0.036609	-2.8497E-05	0.97408	0.00075824	778.754597073595	16.51	0.20391	16.51	16.448	16.652	0	423	25	1.04178812298108	0.0160870233612731	1.04178812298108	629.593735016563	0	9.72202398923548						409	24	5	NaN	NaN	NaN	0.05915	1	35917	16.265	13.815	1	110780			16265	983	13693	14092	16265	16265		
QDLPALEEK	9	Unmodified	_QDLPALEEK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.774396	1041.53424	1.2933	0.00067479	1.7227	0.00089888	3.016	0.0015737	521.775283914396	6.8974	0.29256	6.8974	6.7644	7.0569	0	639	37	0.896281965493857	0.0243687449926693	0.896281965493857	363.745252186961	0	9.88976196564892						514	34	4	NaN	NaN	NaN	0.0042397	1	5259	74.269	62.202	1	158630			16266	955	13694	14093	16266	16266		
QDLPNAMAISEMTDK	15	Unmodified	_QDLPNAMAISEMTDK_			0	0	0	P18085	P18085	P18085	ARF4	ADP-ribosylation factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.38693	1662.75931	2.2874	0.001904	2.4082	0.0020046	4.6956	0.0039085	832.389295994733	12.573	0.17735	12.573	12.493	12.671	0	360	61	1.08395544855938	0.040117848274219	1.08395544855938	437.759283733176	0	16.2017364724527						736	21	5	NaN	NaN	NaN	7.1764E-05	1	23415	110.91	101.16	1	304560			16267	751	13695	14094	16267	16267		
QDLPNAMAISEMTDK	15	Oxidation (M)	_QDLPNAMAISEM(Oxidation (M))TDK_	QDLPNAM(0.036)AISEM(0.964)TDK	QDLPNAM(-14)AISEM(14)TDK	0	1	0	P18085	P18085	P18085	ARF4	ADP-ribosylation factor 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.384387	1678.75422	3.0077	0.0025276	0.37174	0.0003124	3.3795	0.0028401	840.384589017811	9.7977	0.070948	9.7977	9.7711	9.842	0	321	22	1.10999792833052	0.0140151480609543	1.10999792833052	448.241340206897	0	5.65962204946544						74	9	2	NaN	NaN	NaN	0.024629	1	23876	40.83	34.453	2	20417			16268	751	13695	14095	16268	16268	252	
QDLPNAMNAAEITDK	15	Unmodified	_QDLPNAMNAAEITDK_			0	0	0	P61204;P84077	P61204	P61204	ARF3;ARF1	ADP-ribosylation factor 3;ADP-ribosylation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.890694	1629.76684	2.6741	0.0021818	1.2989	0.0010597	3.973	0.0032415	815.891194906694	10.17	0.37241	10.17	10.002	10.374	0	372	85	1.07593298845566	0.0561805005179172	1.07593298845566	434.592075834782	0	22.6924916360855						1614	43	5	NaN	NaN	NaN	7.4363E-33	1	22464	262.3	247.15	1	1346900			16269	1334	13696	14096	16269	16269		
QDLPSLDEK	9	Unmodified	_QDLPSLDEK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.764029	1043.5135	1.4924	0.00078017	1.2344	0.00064527	2.7267	0.0014254	522.764563979436	6.8974	0.23954	6.8974	6.8264	7.066	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.97294732975	0	10.7010247818146						466	28	3	NaN	NaN	NaN	6.7304E-05	1	5313	130.31	72.025	1	127870			16270	2415	13697	14097	16270	16270		
QDLTTLDVTK	10	Unmodified	_QDLTTLDVTK_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.306061	1132.59757	1.4162	0.00080341	-1.2585	-0.00071396	0.15767	8.9447E-05	567.305419526485	8.1479	0.17741	8.1479	8.077	8.2544	0	597	40	0.924688525662974	0.0263501137530128	0.924688525662974	374.879822727124	0	10.6826522644332						268	21	4	NaN	NaN	NaN	0.0034437	1	7609	65.933	31.001	1	103750			16271	1027	13698	14098	16271	16271		
QDLYMWLSNSPHGPSAK	17	Unmodified	_QDLYMWLSNSPHGPSAK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.959442	1929.90433	1.6472	0.0015911	0.63412	0.00061254	2.2813	0.0022037	966.461419387319	12.396	0.1064	12.396	12.343	12.449	0	153	58	1.22165005014568	0.0377649812720997	1.22165005014568	492.802927218342	0	15.2340625820114						353	13	3	NaN	NaN	NaN	8.8709E-07	1	30288	72.031	61.06	1	82359			16272	2348	13699	14099	16272	16272		
QDMGEEAEEEPQK	13	Unmodified	_QDMGEEAEEEPQK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.314485	1518.61442	2.4223	0.0018417	-0.94743	-0.00072035	1.4749	0.0011214	760.313924620881	3.6164	0.11524	3.6164	3.581	3.6962	0	453	25	1.02166545906632	0.0161092490285764	1.02166545906632	412.926758710281	0	6.51087880831932						195	14	3	NaN	NaN	NaN	3.2617E-05	1	19077	103.76	99.233	1	40534			16273	206	13700	14100	16273	16273		
QDMPNAMPVSELTDK	15	Unmodified	_QDMPNAMPVSELTDK_			0	0	0	P84085	P84085	P84085	ARF5	ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.38693	1674.75931	2.337	0.0019593	0.46868	0.00039294	2.8057	0.0023523	838.388670082571	11.181	0.21283	11.181	11.092	11.305	0	363	40	1.08195024817156	0.0260747970563766	1.08195024817156	436.923608176952	0	10.5297766062782						450	25	4	NaN	NaN	NaN	2.2491E-05	1	23750	85.813	80.663	1	167250			16274	1483	13701	14101	16274	16274		
QDPAAAQEGEDEGASAGQGPK	21	Unmodified	_QDPAAAQEGEDEGASAGQGPK_			0	0	0	P0CL82;Q13070;Q13069;P0CL81;P0CL80;O76087;Q9UEU5;Q13066;A6NER3;Q4V326;A6NGK3;P0DTW1;P0DSO3;Q4V321	P0CL82	P0CL82	GAGE12I;GAGE6;GAGE5;GAGE12G;GAGE12F;GAGE7;GAGE2D;GAGE2B;GAGE12J;GAGE2E;GAGE10;GAGE13	G antigen 12I;G antigen 6;G antigen 5;G antigen 12G;G antigen 12F;G antigen 7;G antigen 2D;G antigen 2B/2C;G antigen 12J;G antigen 2E;G antigen 10;G antigen 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.94323	2011.87191	3.7968	0.0038232	-2.8349	-0.0028546	0.96187	0.00096855	1006.94043830851	3.8292	0.062048	3.8292	3.8026	3.8647	4.4409E-16	264	25	1.14797626962532	0.0159721879944936	1.14797626962532	462.948863100248	0	6.44116648481554						104	8	3	NaN	NaN	NaN	2.1618E-06	1	31830	88.796	86.406	1	17550			16275	14	13702	14102	16275	16275		
QDPFQESGLHLSPTAAEAK	19	Unmodified	_QDPFQESGLHLSPTAAEAK_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.000721	2024.98033	1.0508	0.00071035	0.74025	0.00050041	1.7911	0.0012108	676.335321674452	10.622	0.11525	10.622	10.56	10.676	0	564	40	0.946969335010767	0.0263136394103891	0.946969335010767	572.804655068674	0	15.9166454380469						276	14	3	NaN	NaN	NaN	1.1442E-07	1	32056	131.06	114.93	1	58201			16276	1856	13703	14103	16276	16276		
QDPSVLHTEEMR	12	Unmodified	_QDPSVLHTEEMR_			0	0	0	P50502;Q8NFI4	P50502	P50502	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.229519	1440.66673	-1.2375	-0.00059554	1.4062	0.0006767	0.16866	8.1164E-05	481.230279063924	5.4254	0.18618	5.4254	5.381	5.5671	0	801	52	0.78619514174348	0.0347751496683446	0.78619514174348	476.864683405138	0	21.0927794595456						604	22	5	NaN	NaN	NaN	1.6059E-07	1	16684	167.06	152.61	1	259110			16277	1165	13704	14104	16277	16277		
QDPSVLHTEEMR	12	Unmodified	_QDPSVLHTEEMR_			0	0	0	P50502;Q8NFI4	P50502	P50502	ST13;ST13P5	Hsc70-interacting protein;Putative protein FAM10A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.34064	1440.66673	1.9544	0.0014098	0.66455	0.00047936	2.619	0.0018892	721.341340145929	5.4254	0.27484	5.4254	5.3544	5.6292	0	465	73	1.01360860968299	0.0484012810998887	1.01360860968299	409.870559585861	0	19.5719136356669						908	32	5	NaN	NaN	NaN	0.03787	1	16686	43.306	38.778	1	289990			16278	1165	13704	14104	16278	16278		
QDQIQQVVNHGLVPFLVSVLSK	22	Unmodified	_QDQIQQVVNHGLVPFLVSVLSK_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.791824	2447.35364	0.47073	0.00038449	-2.394	-0.0019554	-1.9232	-0.0015709	817.124090905733	20.084	0.035463	20.084	20.066	20.102	0	534	55	0.967195187796614	0.0363763278490683	0.967195187796614	584.351513278458	0	21.9775310033763						210	5	4	NaN	NaN	NaN	6.6854E-23	1	36568	178.05	166.57	1	87812			16279	1207	13705	14105	16279	16279		
QDQISGLSQSEVK	13	Unmodified	_QDQISGLSQSEVK_			0	0	0	Q99590	Q99590	Q99590	SCAF11	Protein SCAF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.85972	1417.70489	1.6201	0.00115	-1.2572	-0.00089244	0.36287	0.00025758	709.85904223549	6.321	0.15074	6.321	6.2767	6.4274	0	489	31	0.997481546940468	0.020167188996535	0.997481546940468	403.411428983281	0	8.15621557774409						171	18	2	NaN	NaN	NaN	0.0038676	1	16011	51.531	42.017	1	59981			16280	2654	13706	14106	16280	16280		
QDSAAVGFDYK	11	Unmodified	_QDSAAVGFDYK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.78021	1199.54587	0.83345	0.00050072	1.3153	0.00079023	2.1488	0.001291	600.780773644085	7.0569	0.29268	7.0569	7.0037	7.2964	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	375.449276093179	0	9.85360504733467						470	34	3	NaN	NaN	NaN	0.037743	1	9439	43.306	27.724	1	227750			16281	1742	13707	14107	16281	16281		
QDSINAYNEPNSTK	14	Unmodified	_QDSINAYNEPNSTK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.862991	1579.71143	2.8695	0.0022694	-1.6818	-0.00133	1.1878	0.00093936	790.861918476802	4.3081	0.15962	4.3081	4.2637	4.4233	0	441	43	1.02971785871157	0.0281795132980842	1.02971785871157	416.035878828188	0	11.3853406355293						278	19	3	NaN	NaN	NaN	0.00011405	1	20954	97.594	86.239	1	50183			16282	251	13708	14108	16282	16282		
QDSLVINLNR	10	Unmodified	_QDSLVINLNR_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.325119	1170.63569	0.85537	0.00050152	0.20462	0.00011998	1.06	0.0006215	586.325506749892	10.206	0.1685	10.206	10.152	10.321	0	609	64	0.916577990479294	0.0425596847399279	0.916577990479294	371.446464205048	0	17.2474623856734						441	20	4	NaN	NaN	NaN	2.1097E-06	1	8631	130.31	109.04	1	131770			16283	3430	13709	14109	16283	16283		
QDTEEDEEEDEK	12	Unmodified	_QDTEEDEEEDEK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.281362	1494.54817	1.3413	0.0010037	-0.098386	-7.362E-05	1.2429	0.00093006	748.281658122775	1.8517	0.16846	1.8517	1.834	2.0024	0	510	16	0.983355730988811	0.0100940546034159	0.983355730988811	397.500906056313	0	4.0803096216311						132	20	2	NaN	NaN	NaN	3.4841E-07	1	18362	150.21	135.06	1	25369			16284	3332	13710	14110	16284	16284		
QDTFALASQQK	11	Unmodified	_QDTFALASQQK_			0	0	0	P09110	P09110	P09110	ACAA1	3-ketoacyl-CoA thiolase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.814584	1235.61462	1.3096	0.00081039	-2.5974	-0.0016073	-1.2878	-0.00079692	618.81363719706	6.321	0.14187	6.321	6.2767	6.4185	0	564	25	0.946969335010767	0.0161941280103991	0.946969335010767	383.527554272971	0	6.55870689766436						195	17	3	NaN	NaN	NaN	0.0008605	1	10485	72.365	40.413	1	52346			16285	597	13711	14111	16285	16285		
QDTYGDIYNFPIHAFDK	17	Unmodified	_QDTYGDIYNFPIHAFDK_			0	0	0	Q9BXY0	Q9BXY0	Q9BXY0	MAK16	Protein MAK16 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.986412	2042.93741	0.52073	0.00035513	0.3367	0.00022963	0.85743	0.00058476	682.320893742924	15.234	0.10641	15.234	15.18	15.287	0	579	46	0.936845902828289	0.0303913445314729	0.936845902828289	566.647290872499	0	18.3820764895721						353	13	4	NaN	NaN	NaN	6.0008E-05	1	32395	69.201	64.646	1	83476			16286	2792	13712	14112	16286	16286		
QDVDDEYGVSQALAR	15	Unmodified	_QDVDDEYGVSQALAR_			0	0	0	P51532	P51532	P51532	SMARCA4	Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.389373	1664.76419	2.3385	0.0019489	-0.3754	-0.00031286	1.9631	0.001636	833.389235119086	9.6381	0.16847	9.6381	9.576	9.7445	0	399	37	1.0578662689527	0.0241072414200156	1.0578662689527	427.218833016624	0	9.73569897157728						277	20	4	NaN	NaN	NaN	3.1985E-24	1	23470	187.51	182.68	1	57667			16287	1187	13713	14113	16287	16287		
QDVDNASLAR	10	Unmodified	_QDVDNASLAR_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.770177	1087.5258	1.5797	0.00086058	0.69098	0.00037642	2.2707	0.001237	544.770796787314	3.581	0.34581	3.581	3.5189	3.8647	0	681	55	0.867820189810857	0.0366242054920374	0.867820189810857	352.000006056255	0	14.8552899625584						706	40	4	NaN	NaN	NaN	8.1272E-15	1	6395	229.61	173.52	1	679580			16288	588	13714	14114	16288	16288		
QDVEALWENMAVIDCFASDHAPHTLEEK	28	Unmodified	_QDVEALWENMAVIDCFASDHAPHTLEEK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	814.623492	3254.46486	1.0346	0.00084283	0.13045	0.00010627	1.1651	0.0009491	814.874868937435	18.532	0.070996	18.532	18.479	18.55	0	420	22	1.04379886199097	0.0140751738735123	1.04379886199097	839.664965755379	0	11.3225170278122						191	9	5	NaN	NaN	NaN	2.8543E-15	1	38510	74.561	74.359	1	32060			16289	867	13715	14115	16289	16289		
QDVIITALDNVEAR	14	Unmodified	_QDVIITALDNVEAR_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.917569	1555.82059	1.1209	0.00087309	1.142	0.00088949	2.2629	0.0017626	778.918877588153	15.349	0.10642	15.349	15.313	15.42	0	378	31	1.07192009927972	0.020067214614357	1.07192009927972	433.144585070015	0	8.10881832842495						218	13	4	NaN	NaN	NaN	0.00024398	1	20239	86.838	65.688	1	50021			16290	3	13716	14116	16290	16290		
QDVLNWLNEEK	11	Unmodified	_QDVLNWLNEEK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.346249	1386.67794	0.938	0.0006513	0.74278	0.00051575	1.6808	0.001167	694.346051941885	14.373	0.21278	14.373	14.285	14.498	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	404.314468215731	0	8.97439654360414						250	25	3	NaN	NaN	NaN	2.1327E-08	1	15043	136.84	120.55	1	88482			16291	1962	13717	14117	16291	16291		
QDVYDLLK	8	Unmodified	_QDVYDLLK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.266207	992.517862	-1.0664	-0.00053027	-0.064069	-3.1859E-05	-1.1304	-0.00056213	497.266231605108	11.926	0.1419	11.926	11.828	11.97	0	678	43	0.869855008346864	0.0284894438301995	0.869855008346864	353.247550715771	0	11.5695445306437						299	17	3	NaN	NaN	NaN	0.0026141	1	4115	84.368	72.301	1	106140			16292	2641	13718	14118	16292	16292		
QDVYLLPK	8	Unmodified	_QDVYLLPK_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.279118	974.543683	0.43559	0.00021269	-4.8324	-0.0023596	-4.3968	-0.0021469	488.278597859732	9.1947	0.25723	9.1947	9.0883	9.3455	0	663	79	0.880024865079826	0.0529236925472962	0.880024865079826	357.467636639783	0	21.4976963127244						609	30	3	NaN	NaN	NaN	0.023536	1	3731	44.767	33.118	1	173880			16293	242	13719	14119	16293	16293		
QDWEHAANDVSFATIR	16	Unmodified	_QDWEHAANDVSFATIR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.627218	1858.85982	-0.87231	-0.00054138	1.0958	0.00068009	0.2235	0.00013871	620.962355275864	11.97	0.070934	11.97	11.935	12.006	0	627	22	0.90440375274676	0.0142082016358767	0.90440375274676	547.389916912255	0	8.5995069008884						149	9	4	NaN	NaN	NaN	0.0026817	1	28668	62.398	61.879	1	36046			16294	1044	13720	14120	16294	16294		
QDWGPITSISFR	12	Unmodified	_QDWGPITSISFR_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.856783	1405.69901	0.81158	0.00057123	1.3885	0.00097732	2.2001	0.0015486	703.85772561691	15.171	0.12416	15.171	15.092	15.216	0	486	28	0.999498404980629	0.0181542333061034	0.999498404980629	404.260449379713	0	7.34272158704624						247	15	4	NaN	NaN	NaN	0.00020036	1	15640	55.754	29.897	1	58877			16295	2329	13721	14121	16295	16295		
QDWVDGEPTEAEK	13	Unmodified	_QDWVDGEPTEAEK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.333535	1502.65252	1.908	0.0014355	-0.056385	-4.2421E-05	1.8516	0.001393	752.333338565585	6.7644	0.27486	6.7644	6.6668	6.9417	0	471	58	1.00957851518677	0.0382938495713495	1.00957851518677	408.080720851305	0	15.4787185961032						762	32	3	NaN	NaN	NaN	5.2714E-08	1	18585	147.72	133.27	1	202390			16296	1465	13722	14122	16296	16296		
QDYLNGAVSGSVQATDR	17	Unmodified	_QDYLNGAVSGSVQATDR_			0	0	0	Q7Z7E8	Q7Z7E8	Q7Z7E8	UBE2Q1	Ubiquitin-conjugating enzyme E2 Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.926654	1779.83875	2.945	0.0026237	8.5193	0.00759	11.464	0.010214	890.933824544901	13.859	0.266	13.859	13.77	14.036	0	309	112	1.11800162319566	0.0739273896731079	1.11800162319566	451.263389858384	0	29.8396028906569						1104	31	4	NaN	NaN	NaN	0.042169	1	26672	18.53	0	1	477630			16297	2151	13723	14123	16297	16297		
QEAGISEGQGTAGEEEEK	18	Unmodified	_QEAGISEGQGTAGEEEEK_			0	0	0	O43583	O43583	O43583	DENR	Density-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.908324	1847.80209	3.9338	0.0036384	-3.244	-0.0030004	0.68978	0.00063799	924.90502804883	3.6962	0.1507	3.6962	3.6608	3.8115	0	345	46	1.09397730668811	0.0300614391365961	1.09397730668811	441.44082828198	0	12.1303673400518						423	18	4	NaN	NaN	NaN	2.4968E-14	1	28426	146.75	141.36	1	127140			16298	208	13724	14124	16298	16298		
QEATLVVGGDGR	12	Unmodified	_QEATLVVGGDGR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.312209	1200.60986	1.4367	0.00086389	-0.2893	-0.00017396	1.1474	0.00068993	601.312250401937	5.6381	0.18629	5.6381	5.5937	5.78	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.516698080373	0	8.21808531580507						317	22	3	NaN	NaN	NaN	4.6128E-05	1	9481	94.791	52.717	1	77541			16299	991	13725	14125	16299	16299		
QEAVVEEDYNENAK	14	Unmodified	_QEAVVEEDYNENAK_			0	0	0	P82970	P82970	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.368106	1636.72166	3.0252	0.0024788	-2.3376	-0.0019154	0.68759	0.00056339	819.366289706831	5.044	0.17732	5.044	4.9997	5.177	0	420	46	1.04379886199097	0.0301527697739288	1.04379886199097	421.597335750152	0	12.1789052135277						422	21	4	NaN	NaN	NaN	9.0029E-06	1	22680	112.7	108.18	1	98187			16300	1479	13726	14126	16300	16300		
QEDKDDLDVTELTNEDLLDQLVK	23	Unmodified	_QEDKDDLDVTELTNEDLLDQLVK_			0	0	1	P42167;P42166	P42167;P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.774782	2687.30252	0.55515	0.00049785	-0.080851	-7.2505E-05	0.4743	0.00042534	897.108737639537	18.222	0.079834	18.222	18.186	18.266	0	474	76	1.00756305028564	0.0504075528298491	1.00756305028564	608.433688823245	0	30.4394383102109						764	10	6	NaN	NaN	NaN	1.9685E-24	1	37569	167.19	156.54	1	243800			16301	1042;1043	13727	14127	16301	16301		
QEDMPFTCEGITPDIIINPHAIPSR	25	Unmodified	_QEDMPFTCEGITPDIIINPHAIPSR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	951.12996	2850.36805	0.73522	0.00069929	-0.82481	-0.00078451	-0.089599	-8.522E-05	951.463582108024	16.546	0.079791	16.546	16.493	16.573	0	450	31	1.02367897599655	0.020133781351245	1.02367897599655	617.983505712431	0	12.154537774479						98	10	2	NaN	NaN	NaN	0.024639	1	38002	17.88	17.403	1	21178			16302	918	13728	14128	16302	16302		
QEEDSYEIFICHANVIR	17	Unmodified	_QEEDSYEIFICHANVIR_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.333594	2121.97895	0.62847	0.00044517	0.25814	0.00018285	0.88662	0.00062802	708.333776986974	13.398	0.070948	13.398	13.363	13.434	0	507	22	0.985374541851584	0.0141316768501546	0.985374541851584	595.84989655548	0	8.54533766774375						131	9	4	NaN	NaN	NaN	0.0017557	1	33642	42.446	42.347	1	25067			16303	2551	13729	14129	16303	16303		
QEEEAAQQGPVVVSPASDYK	20	Unmodified	_QEEEAAQQGPVVVSPASDYK_			0	0	0	O75391	O75391	O75391	SPAG7	Sperm-associated antigen 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.51075	2131.00694	1.8916	0.0020174	0.56657	0.00060426	2.4582	0.0026216	1067.01387196006	7.864	0.062075	7.864	7.8285	7.8906	-8.8818E-16	195	34	1.19381749893585	0.0218879507499383	1.19381749893585	481.250935635428	0	8.82345650565469						77	8	2	NaN	NaN	NaN	3.0589E-07	1	33754	73.262	65.951	1	9451.5			16304	330	13730	14130	16304	16304		
QEEENPAEETGEEK	14	Unmodified	_QEEENPAEETGEEK_			0	0	0	O43768	O43768	O43768	ENSA	Alpha-endosulfine	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.839379	1617.6642	3.4468	0.0027914	-2.8178	-0.002282	0.62899	0.00050938	809.836975360593	3.102	0.25713	3.102	3.0222	3.2794	0	471	34	1.00957851518677	0.0221701170870099	1.00957851518677	407.815828951145	0	8.95554386486742						466	30	4	NaN	NaN	NaN	6.3563E-08	1	22120	152.23	121.88	1	94399			16305	228	13731	14131	16305	16305		
QEELEAALQR	10	Unmodified	_QEELEAALQR_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.806759	1185.59897	1.1628	0.00069046	2.342	0.0013907	3.5047	0.0020811	593.807567606463	7.5447	0.31927	7.5447	7.4294	7.7487	0	600	88	0.922661313351899	0.0587322305210157	0.922661313351899	373.856780475768	0	23.7979443756878						724	37	5	NaN	NaN	NaN	5.8664E-05	1	9022	93.467	69.892	1	515570		+	16306	39	13732	14132	16306	16306		
QEELQQLEQQR	11	Unmodified	_QEELQQLEQQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.857512	1427.70047	2.0957	0.0014981	-1.9362	-0.0013841	0.15945	0.00011398	714.856225341918	6.8619	0.17733	6.8619	6.8175	6.9949	0	492	49	0.995464410099171	0.0322808922550346	0.995464410099171	402.568408345684	0	13.0544771699002						559	21	4	NaN	NaN	NaN	6.9342E-17	1	16314	187.1	108.29	1	216470			16307	1816	13733	14133	16307	16307		
QEELYSELQAR	11	Unmodified	_QEELYSELQAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.335881	1364.65721	1.3786	0.00094203	2.002	0.0013681	3.3806	0.0023101	683.337711206344	8.8487	0.15088	8.8487	8.7955	8.9464	0	492	37	0.995464410099171	0.024207319296828	0.995464410099171	402.746785477957	0	9.79384087761082						337	18	3	NaN	NaN	NaN	6.39E-06	1	14326	124.81	92.853	1	115690			16308	1816	13734	14134	16308	16308		
QEEMNSQQEEEEMETDAR	18	Unmodified	_QEEMNSQQEEEEMETDAR_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1106.93389	2211.85322	2.2673	0.0025098	0.0030967	3.4278E-06	2.2704	0.0025132	1107.43560202624	6.5781	0.0532	6.5781	6.5604	6.6136	0	189	55	1.1977968526266	0.0358191140303898	1.1977968526266	482.740790721989	0	14.4359599810885						203	7	3	NaN	NaN	NaN	4.2157E-14	1	34807	126.63	126.55	1	35561			16309	1667	13735	14135	16309	16309		
QEESLMPSQVVK	12	Unmodified	_QEESLMPSQVVK_			0	0	0	Q9H4M9	Q9H4M9	Q9H4M9	EHD1	EH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.850309	1373.68607	1.5033	0.0010341	4.2194	0.0029023	5.7227	0.0039364	688.352854241736	8.5914	0.24839	8.5914	8.4938	8.7422	0	498	64	0.991429299781895	0.0423716092284074	0.991429299781895	401.087805091565	0	17.141651701597						925	29	5	NaN	NaN	NaN	0.016271	1	14622	45.939	37.466	1	213900			16310	2897	13736	14136	16310	16310		
QEESVDPDYWEK	12	Unmodified	_QEESVDPDYWEK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.828086	1523.64162	1.6316	0.0012446	0.061234	4.6711E-05	1.6928	0.0012913	762.827945340884	8.6002	0.10639	8.6002	8.547	8.6534	0	483	37	1.00151498427745	0.0241939396115666	1.00151498427745	404.770469329161	0	9.77817850479835						246	13	2	NaN	NaN	NaN	0.0020449	1	19214	71.896	66.745	1	89543			16311	1776	13737	14137	16311	16311		
QEFMDGMTELGCDSIEK	17	Unmodified	_QEFMDGMTELGCDSIEK_			0	0	0	Q96GG9	Q96GG9	Q96GG9	DCUN1D1	DCN1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.415559	1988.81656	1.6949	0.0016872	1.747	0.001739	3.442	0.0034262	995.417217960866	13.637	0.088665	13.637	13.593	13.682	0	210	34	1.18386433251387	0.0219090010853469	1.18386433251387	477.459491781405	0	8.83602980202585						246	11	4	NaN	NaN	NaN	4.0318E-19	1	31429	146.48	134.8	1	63498			16312	2542	13738	14138	16312	16312		
QEGHNLGLLHGDMDQSER	18	Unmodified	_QEGHNLGLLHGDMDQSER_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.313193	2034.91775	1.2759	0.00086674	0.31564	0.00021442	1.5915	0.0010812	679.313576769272	6.2855	0.12419	6.2855	6.25	6.3742	0	540	28	0.963152256458504	0.0181944515400058	0.963152256458504	582.574060074974	0	11.0051297013757						191	15	4	NaN	NaN	NaN	0.016462	1	32238	58.508	48.487	1	38681			16313	2189	13739	14139	16313	16313		
QEIIEQLLSNIFHK	14	Unmodified	_QEIIEQLLSNIFHK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.317433	1710.93047	-1.0047	-0.00057399	-0.049754	-2.8425E-05	-1.0544	-0.00060241	571.31744089095	20.031	0.026615	20.031	20.022	20.049	0	678	19	0.869855008346864	0.0122080642620082	0.869855008346864	526.815974872419	0	7.39364976206502						41	4	3	NaN	NaN	NaN	0.0028085	1	24796	54.584	43.612	1	22652			16314	1962	13740	14140	16314	16314		
QEILAALEK	9	Unmodified	_QEILAALEK_			0	0	0	P07602	P07602	P07602	PSAP	Prosaposin;Saposin-A;Saposin-B-Val;Saposin-B;Saposin-C;Saposin-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.795132	1013.57571	0.63422	0.00032205	-0.8199	-0.00041634	-0.18569	-9.429E-05	507.79492283456	10.401	0.18623	10.401	10.33	10.516	0	654	61	0.886123392477847	0.0406596895306061	0.886123392477847	359.751914331091	0	16.5071831631045						486	22	3	NaN	NaN	NaN	0.00070263	1	4601	112.8	70.727	1	279000			16315	561	13741	14141	16315	16315		
QEILPEER	8	Unmodified	_QEILPEER_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.266739	1012.51892	0.98709	0.00050072	1.758	0.00089178	2.7451	0.0013925	507.267417254506	5.6913	0.1508	5.6913	5.6115	5.7623	0	666	49	0.877991458330206	0.0325458093400007	0.877991458330206	356.45545018591	0	13.2132619399489						301	18	2	NaN	NaN	NaN	0.0034491	1	4567	74.486	60.838	1	84999			16316	344	13742	14142	16316	16316		
QEIVSLFNAFGR	12	Unmodified	_QEIVSLFNAFGR_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.867151	1379.71975	0.31418	0.00021706	1.1054	0.00076367	1.4196	0.00098073	690.867298220678	17.14	0.15075	17.14	17.078	17.229	0	477	37	1.0055473068722	0.0241939396115666	1.0055473068722	406.781604125573	0	9.78735609756961						389	18	4	NaN	NaN	NaN	0.015469	1	14815	63.397	44.141	1	104160			16317	2549	13743	14143	16317	16317		
QELEEICHDLEAR	13	Unmodified	_QELEEICHDLEAR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.922755	1640.74643	-0.1823	-9.9889E-05	0.82761	0.00045347	0.64531	0.00035358	548.25778133769	10.17	0.079814	10.17	10.135	10.214	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	520.831174931008	0	9.86843283905785						149	10	3	NaN	NaN	NaN	0.00030205	1	22769	50.09	39.118	1	36284			16318	972	13744	14144	16318	16318		
QELGICPAVK	10	Unmodified	_QELGICPAVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.799891	1113.58523	1.42	0.0007921	9.5563	0.0053305	10.976	0.0061226	558.306877828658	7.2875	0.24826	7.2875	7.2255	7.4738	0	615	85	0.912521036363781	0.0568289166670377	0.912521036363781	370.022875951989	0	23.0438514230485						714	29	4	NaN	NaN	NaN	0.037728	1	7088	42.075	12.765	1	311160			16319	867	13745	14145	16319	16319		
QELILSNSEDK	11	Unmodified	_QELILSNSEDK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.324982	1274.63541	1.847	0.001179	0.18973	0.00012111	2.0368	0.0013001	638.325004421683	6.454	0.23054	6.454	6.3387	6.5693	0	531	67	0.969216233931596	0.0444599647711276	0.969216233931596	392.404851338723	0	18.0004267941002						616	27	3	NaN	NaN	NaN	0.0014241	1	11619	92.428	57.496	1	199810			16320	1241	13746	14146	16320	16320		
QELLEEVK	8	Unmodified	_QELLEEVK_			0	0	0	P50552	P50552	P50552	VASP	Vasodilator-stimulated phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.27149	986.528426	0.54112	0.00026746	-1.8337	-0.00090636	-1.2926	-0.0006389	494.2705682147	7.3408	0.13298	7.3408	7.3053	7.4383	0	672	28	0.873923798053065	0.0183057433537801	0.873923798053065	354.929345327536	0	7.43456754326371						165	16	2	NaN	NaN	NaN	0.012983	1	3985	67.507	11.129	1	45700			16321	1166	13747	14147	16321	16321		
QELLGWLAEK	10	Unmodified	_QELLGWLAEK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.826963	1185.63937	0.34098	0.00020248	2.4517	0.0014559	2.7927	0.0016584	593.826943583708	15.074	0.079793	15.074	15.038	15.118	-1.7764E-15	567	22	0.944945209309785	0.0141688807218944	0.944945209309785	382.885929676412	0	5.74114246437557						104	10	2	NaN	NaN	NaN	0.0010787	1	9035	62.271	42.037	1	35074			16322	1713	13748	14148	16322	16322		
QELQEVVEFLK	11	Unmodified	_QELQEVVEFLK_			0	0	0	Q96TA2	Q96TA2	Q96TA2	YME1L1	ATP-dependent zinc metalloprotease YME1L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.369192	1360.72383	0.36017	0.00024541	1.3727	0.00093528	1.7328	0.0011807	681.369820920651	15.677	0.07978	15.677	15.642	15.721	0	465	34	1.01360860968299	0.022160929987054	1.01360860968299	410.09948832471	0	8.96616895483243						214	10	3	NaN	NaN	NaN	2.4889E-06	1	14236	139.02	99.696	1	56819			16323	2634	13749	14149	16323	16323		
QELSHALYQHDAACR	15	Unmodified	_QELSHALYQHDAACR_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.918109	1797.82167	3.18	0.0028617	-2.3012	-0.0020709	0.87876	0.00079081	899.915640481131	4.3081	0.044255	4.3081	4.2904	4.3347	0	276	46	1.13998907770044	0.0299705228229417	1.13998907770044	460.102729733855	0	12.0961855092526						148	6	3	NaN	NaN	NaN	3.3411E-05	1	27155	98.167	95.865	1	24517			16324	3288	13750	14150	16324	16324		
QELSHALYQHDAACR	15	Unmodified	_QELSHALYQHDAACR_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	450.462693	1797.82167	0.53881	0.00024271	1.1199	0.00050445	1.6587	0.00074717	450.463151761402	4.3081	0.088681	4.3081	4.2815	4.3701	0	741	22	0.827064408645228	0.0142853496956143	0.827064408645228	667.605206580095	0	11.531113822479						169	11	4	NaN	NaN	NaN	0.021186	1	27156	39.293	29.55	1	48654			16325	3288	13750	14150	16325	16325		
QELSHALYQHDAACR	15	Unmodified	_QELSHALYQHDAACR_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.281165	1797.82167	1.2749	0.0007653	0.98878	0.00059355	2.2637	0.0013588	600.281960656638	4.3081	0.1596	4.3081	4.2726	4.4322	0	663	31	0.880024865079826	0.0203354810451108	0.880024865079826	532.768389927033	0	12.3111311108382						355	19	5	NaN	NaN	NaN	1.0891E-08	1	27157	168.05	146.69	1	144540			16326	3288	13750	14150	16326	16326		
QEMQEVQSSR	10	Unmodified	_QEMQEVQSSR_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.280051	1220.54555	2.235	0.0013662	-0.50587	-0.00030923	1.7292	0.001057	611.280241947721	2.6143	0.61183	2.6143	2.5523	3.1641	0	636	61	0.898312834727904	0.0406202211384199	0.898312834727904	363.871032595203	0	16.4536464786894						1196	70	5	NaN	NaN	NaN	1.852E-36	1	10022	301.76	249.9	1	813020			16327	808	13751	14151	16327	16327		
QENLPDEIYHVYSFALR	17	Unmodified	_QENLPDEIYHVYSFALR_			0	0	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.681211	2093.0218	0.52879	0.00036945	-0.36711	-0.00025649	0.16168	0.00011296	699.015165628133	17.716	0.21278	17.716	17.583	17.796	0	546	37	0.959108205975751	0.024267665443817	0.959108205975751	580.018930772639	0	14.6758262262505						554	25	4	NaN	NaN	NaN	0.00033427	1	33233	72.327	63.171	1	154210			16328	2760	13752	14152	16328	16328		
QEPLEEDSPSSSSAGLDK	18	Unmodified	_QEPLEEDSPSSSSAGLDK_			0	0	0	P15408	P15408	P15408	FOSL2	Fos-related antigen 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.426349	1874.83815	2.4187	0.0022698	0.88047	0.00082625	3.2992	0.003096	938.928677510498	6.4629	0.070936	6.4629	6.4274	6.4983	0	297	34	1.12600091227925	0.0219935068303474	1.12600091227925	454.314131119123	0	8.87384800218859						188	9	3	NaN	NaN	NaN	0.0013395	1	29031	61.503	59.202	1	31371			16329	713	13753	14153	16329	16329		
QEPYTLPQGFTWDALDLGDR	20	Unmodified	_QEPYTLPQGFTWDALDLGDR_			0	0	0	P30419	P30419	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.55549	2321.09643	-0.34047	-0.00039547	1.9207	0.002231	1.5803	0.0018356	1162.05824355837	18.878	0.08867	18.878	18.843	18.931	0	69	31	1.27715511956461	0.0197879567464534	1.27715511956461	514.572818452977	0	7.97267655155252						175	11	3	NaN	NaN	NaN	0.00083713	1	35826	49.967	46.714	1	31122			16330	909	13754	14154	16330	16330		
QEQAHDDAIWSVAWGTNK	18	Unmodified	_QEQAHDDAIWSVAWGTNK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.988815	2054.94462	0.62653	0.00042979	0.89673	0.00061515	1.5233	0.0010449	686.323726601206	12.387	0.11525	12.387	12.334	12.449	0	540	46	0.963152256458504	0.0303366841243174	0.963152256458504	582.535620274286	0	18.3482922714679						282	14	4	NaN	NaN	NaN	6.0566E-05	1	32617	69.327	63.122	1	59784			16331	2830	13755	14155	16331	16331		
QEQAHDDAIWSVAWGTNK	18	Unmodified	_QEQAHDDAIWSVAWGTNK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.47958	2054.94462	1.6889	0.001737	8.8744	0.0091271	10.563	0.010864	1028.4915778897	12.369	0.1862	12.369	12.29	12.476	0	165	55	1.21370334790578	0.0357847140895524	1.21370334790578	489.38452859896	0	14.4289669019876						433	22	3	NaN	NaN	NaN	0.0323	1	32620	37.146	35.175	1	106620			16332	2830	13755	14155	16332	16332		
QEQALLEEIER	11	Unmodified	_QEQALLEEIER_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.351531	1356.68851	1.0446	0.00070963	-0.37746	-0.00025643	0.66712	0.00045321	679.351545096643	11.447	0.18631	11.447	11.403	11.589	0	504	25	0.987393073566096	0.0161471385123466	0.987393073566096	399.504808297208	0	6.53322334197202						304	22	3	NaN	NaN	NaN	8.8193E-08	1	14091	156.57	120.36	1	80894			16333	1816	13756	14156	16333	16333		
QEQEDLELK	9	Unmodified	_QEQEDLELK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.280043	1130.54553	1.1379	0.00064439	3.1222	0.001768	4.2602	0.0024124	566.282136717194	5.2923	0.088706	5.2923	5.2568	5.3455	0	579	22	0.936845902828289	0.0141786956334647	0.936845902828289	379.816839702635	0	5.74833849446333						95	11	2	NaN	NaN	NaN	0.036727	1	7538	39.01	7.0576	1	20860			16334	1668	13757	14157	16334	16334		
QEQIINTMTQDLR	13	Unmodified	_QEQIINTMTQDLR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.401229	1588.78791	1.8071	0.0014374	9.1193	0.0072535	10.926	0.0086909	795.408023931233	12.148	0.23945	12.148	12.077	12.316	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	437.11753552267	0	11.3440110641168						726	28	5	NaN	NaN	NaN	0.00040758	1	21248	74.524	19.94	1	348620			16335	667	13758	14158	16335	16335		
QEQINTEPLEDTVLSPTK	18	Unmodified	_QEQINTEPLEDTVLSPTK_			0	0	0	O15446	O15446	O15446	CD3EAP	DNA-directed RNA polymerase I subunit RPA34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.51804	2041.02153	1.4913	0.0015234	0.059838	6.1125E-05	1.5512	0.0015845	1021.51815396916	12.635	0.088657	12.635	12.591	12.68	0	186	37	1.1997861197946	0.0238662955087066	1.1997861197946	483.795056713353	0	9.62371175884999						218	11	3	NaN	NaN	NaN	4.6193E-06	1	32361	80.379	75.825	1	44445			16336	176	13759	14159	16336	16336		
QEQIQAMPLADSQAVR	16	Unmodified	_QEQIQAMPLADSQAVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.951617	1783.88868	3.0436	0.0027178	-1.912	-0.0017073	1.1316	0.0010105	892.950475512265	9.8066	0.133	9.8066	9.7534	9.8864	0	306	40	1.12000185836644	0.026003062393495	1.12000185836644	452.062855185153	0	10.4955349326885						374	16	4	NaN	NaN	NaN	3.1303E-12	1	26801	158.59	139.03	1	89789			16337	1816	13760	14160	16337	16337		
QEQLTPGVVYVR	12	Unmodified	_QEQLTPGVVYVR_			0	0	0	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.880259	1387.74596	0.92809	0.00064491	-0.4872	-0.00033855	0.44089	0.00030637	694.881126235365	9.4608	0.14187	9.4608	9.4253	9.5672	0	462	34	1.01562323939346	0.022160929987054	1.01562323939346	410.834127326418	0	8.96441315916564						246	17	3	NaN	NaN	NaN	2.8235E-05	1	15081	114.39	104.88	1	71027			16338	2801	13761	14161	16338	16338		
QEQSYFVR	8	Unmodified	_QEQSYFVR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.759081	1055.50361	1.1629	0.00061488	1.5597	0.0008247	2.7225	0.0014396	528.759683094551	5.5849	0.22173	5.5849	5.4962	5.7179	0	651	34	0.888155670855968	0.022351963978809	0.888155670855968	360.385051694996	0	9.06970923939991						306	26	2	NaN	NaN	NaN	0.00059109	1	5596	105.04	68.83	1	78075			16339	272	13762	14162	16339	16339		
QEQVTAAVAHAVEQQMQK	18	Unmodified	_QEQVTAAVAHAVEQQMQK_			0	0	0	Q8IWX8	Q8IWX8	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.002068	1994.98437	0.69512	0.00046295	4.7351	0.0031536	5.4303	0.0036166	666.339706573779	12.174	0.15077	12.174	12.103	12.254	0	510	55	0.983355730988811	0.0363562041234198	0.983355730988811	594.874944965049	0	21.9934599916453						408	18	4	NaN	NaN	NaN	0.055859	1	31542	29.217	27.629	1	122660			16340	2206	13763	14163	16340	16340		
QESDQLVLNQHPASDK	16	Unmodified	_QESDQLVLNQHPASDK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.942304	1807.87006	2.5343	0.0022934	-1.0504	-0.00095052	1.4839	0.0013428	904.94119894959	5.2036	0.070939	5.2036	5.177	5.2479	0	273	43	1.14198628764525	0.0279705629566351	1.14198628764525	460.889195286332	0	11.288515801158						181	9	3	NaN	NaN	NaN	3.0754E-05	1	27422	90.156	83.016	1	37351			16341	718	13764	14164	16341	16341		
QESDQLVLNQHPASDK	16	Unmodified	_QESDQLVLNQHPASDK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.630628	1807.87006	0.78431	0.00047343	2.1234	0.0012817	2.9077	0.0017552	603.631849278445	5.2036	0.12417	5.2036	5.1681	5.2923	0	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	545.046106249692	0	9.83346723866669						270	15	4	NaN	NaN	NaN	2.396E-05	1	27423	110.44	109.48	1	87552			16342	718	13764	14164	16342	16342		
QESTSVLLQQSEK	13	Unmodified	_QESTSVLLQQSEK_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.880652	1475.74675	1.622	0.0011985	-1.5008	-0.0011089	0.1212	8.9555E-05	738.879722071146	6.5515	0.14188	6.5515	6.5072	6.6491	0	453	37	1.02166545906632	0.0241605388886725	1.02166545906632	413.035085337845	0	9.76753217321351						279	17	3	NaN	NaN	NaN	7.2883E-05	1	17768	119.55	106.28	1	105490			16343	1722	13765	14165	16343	16343		
QETELSPEMISSGSWR	16	Unmodified	_QETELSPEMISSGSWR_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.925265	1835.83598	3.0025	0.0027591	-0.74835	-0.00068768	2.2542	0.0020714	918.925491169777	12.946	0.17736	12.946	12.839	13.017	0	309	52	1.11800162319566	0.0339993293213128	1.11800162319566	451.157001256925	0	13.7200475769486						604	21	4	NaN	NaN	NaN	1.6378E-08	1	28123	117.21	108.84	1	151310			16344	3337	13766	14166	16344	16344		
QETEVELYNEFPEPIK	16	Unmodified	_QETEVELYNEFPEPIK_			0	0	0	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.978021	1963.94149	1.988	0.0019541	-0.54616	-0.00053686	1.4418	0.0014173	983.480011730353	14.365	0.23055	14.365	14.214	14.444	0	225	70	1.17390432875292	0.0458286343267644	1.17390432875292	473.484130515794	0	18.4845822146222						1123	27	6	NaN	NaN	NaN	1.5912E-17	1	30999	170.22	155.25	1	419730			16345	1180	13767	14167	16345	16345		
QETFDAGLQAFQQEGIANITALK	23	Unmodified	_QETFDAGLQAFQQEGIANITALK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	831.758849	2492.25472	1.3427	0.0011168	-0.0062118	-5.1668E-06	1.3365	0.0011117	832.093090469174	18.585	0.053194	18.585	18.568	18.621	0	408	37	1.0518390438467	0.0241172212531353	1.0518390438467	635.426257688904	0	14.569449324386						179	7	4	NaN	NaN	NaN	1.1464E-09	1	36792	130.81	117.74	1	40837			16346	1703	13768	14168	16346	16346		
QETVADFTPK	10	Unmodified	_QETVADFTPK_			0	0	0	O75400	O75400	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.285128	1134.5557	1.2818	0.00072841	-1.4606	-0.00083006	-0.17887	-0.00010165	568.284853798513	7.2255	0.16853	7.2255	7.1545	7.3231	0	612	40	0.914549654013882	0.0263793478580419	0.914549654013882	370.76170765967	0	10.6942821703233						412	20	3	NaN	NaN	NaN	0.04497	1	7651	36.24	26.152	1	107740			16347	332	13769	14169	16347	16347		
QEVEEWVASGNK	12	Unmodified	_QEVEEWVASGNK_			0	0	0	P13995	P13995	P13995	MTHFD2	Bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase, mitochondrial;NAD-dependent methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.328056	1374.64156	1.7436	0.0012002	-0.29368	-0.00020215	1.45	0.00099805	688.328307900808	7.3496	0.1862	7.3496	7.2875	7.4738	0	528	34	0.971237000454584	0.0222253598495629	0.971237000454584	392.916203371195	0	8.99132138351553						344	22	4	NaN	NaN	NaN	2.7664E-07	1	14643	122.51	100.47	1	84406			16348	691	13770	14170	16348	16348		
QEVISTSSK	9	Unmodified	_QEVISTSSK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.758746	977.50294	0.82817	0.0004056	0.21265	0.00010415	1.0408	0.00050975	489.759134329054	2.6055	0.25717	2.6055	2.5789	2.836	0	729	28	0.835224628594324	0.0183541170899648	0.835224628594324	339.255386939093	0	7.45515982420318						242	30	3	NaN	NaN	NaN	0.026055	1	3785	36.211	28.207	1	46090			16349	1435	13771	14171	16349	16349		
QEVPIIIVFR	10	Unmodified	_QEVPIIIVFR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.368798	1212.72304	-0.25024	-0.00015199	-0.14522	-8.8203E-05	-0.39547	-0.00024019	607.368739063287	16.386	0.11526	16.386	16.324	16.44	0	519	40	0.97729762293174	0.0262627024268471	0.97729762293174	395.89319860917	0	10.6387501861462						225	14	3	NaN	NaN	NaN	0.0011104	1	9818	69.905	55.91	1	42370			16350	918	13772	14172	16350	16350		
QEVPSWLENMAYEHHYK	17	Unmodified	_QEVPSWLENMAYEHHYK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	541.000645	2159.97347	-1.1576	-0.00062625	-0.28221	-0.00015268	-1.4398	-0.00077892	541.251426069196	12.157	0.15963	12.157	12.068	12.227	0	750	28	0.820941264895493	0.0183745423602224	0.820941264895493	661.81320394502	0	14.8128925544879						447	19	5	NaN	NaN	NaN	0.0009428	1	34167	44.045	38.142	1	137900			16351	93	13773	14173	16351	16351		
QEYDESGPSIVHR	13	Unmodified	_QEYDESGPSIVHR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261	P60709;P63261	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.239072	1515.69539	1.3411	0.0006789	0.70671	0.00035776	2.0478	0.0010367	506.239233422553	5.0174	0.65611	5.0174	4.8844	5.5405	0	726	193	0.837263974740672	0.130873265283259	0.837263974740672	507.601525325015	0	79.3435177987008						2652	75	6	NaN	NaN	NaN	0.00017043	1	18993	124.81	119.65	1	5762600			16352	1310;1436	13774	14174	16352	16352		
QEYDESGPSIVHR	13	Unmodified	_QEYDESGPSIVHR_			0	0	0	P60709;Q6S8J3;A5A3E0;P0CG38;Q9BYX7;P63261	P60709;P63261	P60709	ACTB;POTEE;POTEF;POTEI;POTEKP;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.854969	1515.69539	3.3619	0.0025512	-0.58641	-0.000445	2.7754	0.0021062	758.854722627576	5.0174	0.54975	5.0174	4.9287	5.4785	0	483	106	1.00151498427745	0.0705998926440209	1.00151498427745	404.789576757186	0	28.5348707818823						2674	63	6	NaN	NaN	NaN	9.281E-55	1	18994	331.52	291.02	1	4032700			16353	1310;1436	13774	14174	16353	16353		
QEYLDTLYR	9	Unmodified	_QEYLDTLYR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.798403	1199.58225	0.86299	0.00051848	3.4151	0.0020518	4.2781	0.0025703	600.799596946218	9.9396	0.21279	9.9396	9.8332	10.046	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.933864585154	0	9.83451463524352						410	25	4	NaN	NaN	NaN	3.3384E-06	1	9442	133.68	100.25	1	128720			16354	1304	13775	14175	16354	16354		
QEYLNEYEAEK	11	Unmodified	_QEYLNEYEAEK_			0	0	0	Q969G3	Q969G3	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.319896	1414.62524	1.8954	0.0013426	-0.11001	-7.7923E-05	1.7854	0.0012647	708.319729114649	6.5249	0.133	6.5249	6.4717	6.6047	0	477	31	1.0055473068722	0.0201588292942909	1.0055473068722	406.682012723658	0	8.15300604509184						245	16	3	NaN	NaN	NaN	0.0039667	1	15911	47.334	33.34	1	69318			16355	2458	13776	14176	16355	16355		
QFAEGSTLK	9	Unmodified	_QFAEGSTLK_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.756007	979.497461	0.96136	0.00047179	-0.21622	-0.00010611	0.74514	0.00036568	490.756128771472	4.3613	0.15959	4.3613	4.2992	4.4588	0	708	25	0.849494101904619	0.0163000411099919	0.849494101904619	345.041681509065	0	6.62063877859629						203	19	2	NaN	NaN	NaN	0.050117	1	3831	30.593	23.242	1	50007			16356	2886	13777	14177	16356	16356		
QFAEMYVAK	9	Unmodified	_QFAEMYVAK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.76806	1085.52157	1.5979	0.00086888	0.73499	0.00039967	2.3329	0.0012686	543.768452320315	7.8108	0.28382	7.8108	7.7221	8.0059	0	618	58	0.910492137470517	0.0385490956418131	0.910492137470517	369.316874754683	0	15.6364134748113						982	33	5	NaN	NaN	NaN	7.6428E-05	1	6347	125.98	108.59	1	601570			16357	679	13778	14178	16357	16357		
QFAEWICHLHK	11	Unmodified	_QFAEWICHLHK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.243323	1467.70814	-0.6763	-0.00033155	-1.3416	-0.0006577	-2.0179	-0.00098925	490.243000084868	9.7711	0.070947	9.7711	9.7445	9.8154	0	816	22	0.775960037304758	0.0143351345420983	0.775960037304758	470.574251536069	0	8.6934183250566						138	9	3	NaN	NaN	NaN	0.0028865	1	17515	74.269	40.843	1	34748			16358	1047	13779	14179	16358	16358		
QFAPEYEK	8	Unmodified	_QFAPEYEK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.242732	1010.47091	1.2507	0.00063315	1.2325	0.00062396	2.4832	0.0012571	506.243416619511	4.8755	0.26599	4.8755	4.778	5.044	0	654	64	0.886123392477847	0.0426956385546063	0.886123392477847	359.766710451182	0	17.3344587941091						546	31	4	NaN	NaN	NaN	0.002591	1	4513	88.921	64.07	1	194350			16359	680	13780	14180	16359	16359		
QFAPIHAEAPEFMEMSVEQEILVTGIK	27	Unmodified	_QFAPIHAEAPEFMEMSVEQEILVTGIK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1015.50844	3043.50348	0.56976	0.0005786	0.14061	0.00014279	0.71037	0.00072139	1015.84324421159	19.126	0.062061	19.126	19.1	19.162	0	312	25	1.11600111266355	0.016005187067117	1.11600111266355	673.509689255448	0	9.65917367440738						208	8	5	NaN	NaN	NaN	7.305E-11	1	38280	98.868	96.619	1	42736			16360	541	13781	14181	16360	16360		
QFAQDFVMHTDVR	13	Unmodified	_QFAQDFVMHTDVR_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.920797	1592.74056	-0.07762	-4.1288E-05	2.9069	0.0015462	2.8293	0.0015049	532.591693392445	10.126	0.097546	10.126	10.081	10.179	0	714	31	0.845418525735192	0.0203835468475623	0.845418525735192	512.321168811196	0	12.3523701309709						307	12	5	NaN	NaN	NaN	0.002618	1	21347	83.775	81.473	1	68409			16361	273	13782	14182	16361	16361		
QFASQANVVGPWIQTK	16	Unmodified	_QFASQANVVGPWIQTK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.467761	1772.92097	2.6744	0.0023735	0.059517	5.2819E-05	2.7339	0.0024263	887.467938575327	12.972	0.15961	12.972	12.901	13.061	0	264	46	1.14797626962532	0.0299457990426275	1.14797626962532	463.376180718064	0	12.0875059494498						552	19	4	NaN	NaN	NaN	2.5416E-06	1	26491	110.91	105.21	1	152450			16362	221	13783	14183	16362	16362		
QFCTGEFR	8	Unmodified	_QFCTGEFR_			0	0	0	O43447	O43447	O43447	PPIH	Peptidyl-prolyl cis-trans isomerase H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.732009	1043.44946	-0.053532	-2.7983E-05	0.9859	0.00051536	0.93237	0.00048738	522.732685122152	6.3476	0.1862	6.3476	6.3033	6.4895	0	714	34	0.845418525735192	0.0224203443559257	0.845418525735192	343.094724463686	0	9.09880921108027						260	22	3	NaN	NaN	NaN	0.0048612	1	5306	85.813	78.166	1	60073			16363	203	13784	14184	16363	16363		
QFDIQLLTHNDPK	13	Unmodified	_QFDIQLLTHNDPK_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.607095	1567.79946	-0.62594	-0.00032774	-3.2073	-0.0016794	-3.8332	-0.0020071	523.606180256341	11.616	0.16856	11.616	11.553	11.722	0	717	46	0.84338031290707	0.030568952954407	0.84338031290707	511.156039284725	0	18.5272346035632						473	20	4	NaN	NaN	NaN	0.046618	1	20591	39.039	35.534	1	216460			16364	1109	13785	14185	16364	16364		
QFEDELHPDLK	11	Unmodified	_QFEDELHPDLK_			0	0	0	Q9Y3C6	Q9Y3C6	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.832974	1369.6514	1.6469	0.0011295	0.51449	0.00035285	2.1614	0.0014824	685.833004021699	8.139	0.11528	8.139	8.0947	8.21	0	465	34	1.01360860968299	0.022160929987054	1.01360860968299	410.072609098248	0	8.96558128356565						241	14	3	NaN	NaN	NaN	0.0089602	1	14470	48.785	43.477	1	58127			16365	3384	13786	14186	16365	16365		
QFFLQFHFK	9	Unmodified	_QFFLQFHFK_			0	0	0	Q15428	Q15428	Q15428	SF3A2	Splicing factor 3A subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.553715	1240.63931	-2.0379	-0.00084483	-0.99742	-0.00041349	-3.0354	-0.0012583	414.553503588309	14.506	0.088692	14.506	14.471	14.56	0	837	19	0.761618911097395	0.0122983894338651	0.761618911097395	462.664644335776	0	7.4709672914023						132	11	3	NaN	NaN	NaN	0.016993	1	10636	38.322	26.255	1	32687			16366	1848	13787	14187	16366	16366		
QFGFIVLTTSAGIMDHEEAR	20	Unmodified	_QFGFIVLTTSAGIMDHEEAR_			0	0	0	P62244	P62244	P62244	RPS15A	40S ribosomal protein S15a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.368527	2221.08375	0.84099	0.00062348	1.7604	0.0013051	2.6014	0.0019286	741.704148306741	16.661	0.36358	16.661	16.599	16.963	0	411	40	1.04982941439551	0.0261287930352008	1.04982941439551	634.641299734326	0	15.7953386949985						1024	42	6	NaN	NaN	NaN	0.043172	1	34901	21.823	20.644	1	426580			16367	1371	13788	14188	16367	16367		
QFGIDGESFELK	12	Unmodified	_QFGIDGESFELK_			0	0	0	Q9Y2P8	Q9Y2P8	Q9Y2P8	RCL1	RNA 3-terminal phosphate cyclase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.33535	1368.65615	1.2109	0.00082987	1.3236	0.00090708	2.5344	0.0017369	685.336351032112	13.602	0.19506	13.602	13.478	13.673	0	495	43	0.993446994398923	0.0282418742669083	0.993446994398923	401.91880171797	0	11.425813684698						318	23	3	NaN	NaN	NaN	0.00050188	1	14450	77.358	62.596	1	96362			16368	3344	13789	14189	16368	16368		
QFIDSNPNQPLVILEMESGASAK	23	Unmodified	_QFIDSNPNQPLVILEMESGASAK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1244.62305	2487.23154	0.27106	0.00033736	0.59172	0.00073647	0.86278	0.0010738	1245.12555198386	17.45	0.079803	17.45	17.424	17.504	0	66	40	1.27913350869533	0.0257261069079902	1.27913350869533	515.164971160579	0	10.3610678895016						233	10	4	NaN	NaN	NaN	0.00063036	1	36765	42.977	40.526	1	35032			16369	1136	13790	14190	16369	16369		
QFILVMNALDNR	12	Unmodified	_QFILVMNALDNR_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.382111	1432.74967	1.1202	0.00080361	2.2249	0.0015961	3.3451	0.0023997	717.38238939192	15.801	0.10641	15.801	15.766	15.872	0	447	31	1.02569221487577	0.0201310011285361	1.02569221487577	414.778568839094	0	8.14075384047214						273	13	4	NaN	NaN	NaN	0.00032114	1	16480	76.85	57.527	1	59655			16370	3188	13791	14191	16370	16370		
QFINLMLPMK	10	Unmodified	_QFINLMLPMK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.837962	1233.66137	0.54884	0.00033909	-2.6761	-0.0016534	-2.1273	-0.0013143	617.837304136585	16.502	0.22167	16.502	16.404	16.626	0	567	40	0.944945209309785	0.0263172834355764	0.944945209309785	382.714467923471	0	10.6588244778707						697	26	5	NaN	NaN	NaN	9.2004E-05	1	10441	87.251	22.095	1	274900			16371	1465	13792	14192	16371	16371		
QFIQGPPEVIR	11	Unmodified	_QFIQGPPEVIR_			0	0	0	Q9NTX5	Q9NTX5	Q9NTX5	ECHDC1	Ethylmalonyl-CoA decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.358962	1282.70337	1.2201	0.00078372	-1.3057	-0.00083873	-0.08564	-5.5011E-05	642.358358510517	10.693	0.097545	10.693	10.658	10.755	0	534	25	0.967195187796614	0.0161717265136965	0.967195187796614	391.560198303362	0	6.54697678452709						156	12	3	NaN	NaN	NaN	0.013276	1	11852	33.723	18.961	1	35434			16372	3046	13793	14193	16372	16372		
QFLDYFK	7	Unmodified	_QFLDYFK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.744911	959.475269	-0.24984	-0.00012011	-0.86127	-0.00041405	-1.1111	-0.00053416	480.744375631831	13.478	0.1596	13.478	13.425	13.584	0	711	40	0.847456455381371	0.0264930907704451	0.847456455381371	344.313485166593	0	10.763890413581						368	19	4	NaN	NaN	NaN	0.033787	1	3426	66.087	36.777	1	202710			16373	804	13794	14194	16373	16373		
QFLECAQNQGDIK	13	Unmodified	_QFLECAQNQGDIK_			0	0	0	Q9Y6H1;Q5T1J5	Q9Y6H1	Q9Y6H1	CHCHD2;CHCHD2P9	Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.867022	1549.71949	2.2982	0.0017831	-2.1141	-0.0016402	0.1841	0.00014284	775.865362156035	7.1723	0.21281	7.1723	7.1191	7.3319	0	399	61	1.0578662689527	0.0401898354964538	1.0578662689527	427.480529093563	0	16.2405898046227						612	25	4	NaN	NaN	NaN	1.6535E-07	1	20036	147.19	110.67	1	184840			16374	1987	13795	14195	16374	16374		
QFLESSELPR	10	Unmodified	_QFLESSELPR_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.311677	1204.6088	0.51437	0.00031033	-1.7701	-0.0010679	-1.2557	-0.00075758	603.310115984104	9.4164	0.18617	9.4164	9.3189	9.5051	0	528	64	0.971237000454584	0.042471368758535	0.971237000454584	393.467928783479	0	17.2060181914389						423	22	3	NaN	NaN	NaN	0.00015231	1	9596	76.605	48.868	1	107240			16375	278	13796	14196	16375	16375		
QFLEVELDQAR	11	Unmodified	_QFLEVELDQAR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.348791	1346.68303	0.92873	0.00062629	-1.9263	-0.001299	-0.99752	-0.00067268	674.347873742525	12.245	0.39906	12.245	12.139	12.538	0	513	46	0.981336640919867	0.0302863591438532	0.981336640919867	397.084098992697	0	12.2549501678989						500	46	3	NaN	NaN	NaN	0.00029666	1	13805	85.622	57.526	1	149910			16376	1782	13797	14197	16376	16376		
QFLGYVPIMVK	11	Unmodified	_QFLGYVPIMVK_			0	0	0	Q9H9Y6	Q9H9Y6	Q9H9Y6	POLR1B	DNA-directed RNA polymerase I subunit RPA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.865034	1293.71552	1.2522	0.00081128	0.067723	4.3875E-05	1.32	0.00085516	648.366544250285	15.544	0.097545	15.544	15.5	15.597	0	504	52	0.987393073566096	0.0343008202901166	0.987393073566096	399.700872992557	0	13.8851164560074						225	12	2	NaN	NaN	NaN	0.050083	1	12192	48.157	34.884	1	50257			16377	2941	13798	14198	16377	16377		
QFLQAAEAIDDIPFGITSNSDVFSK	25	Unmodified	_QFLQAAEAIDDIPFGITSNSDVFSK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	905.116702	2712.32828	1.47	0.0013305	0.76411	0.00069161	2.2341	0.0020221	905.11902341836	19.791	0.079818	19.791	19.756	19.836	0	429	124	1.03776581230406	0.0823495177493749	1.03776581230406	626.642364990986	0	49.7257627361652						473	10	5	NaN	NaN	NaN	6.7124E-05	1	37640	89.489	87.865	1	118490			16378	554	13799	14199	16378	16378		
QFMAETQFTSGEK	13	Unmodified	_QFMAETQFTSGEK_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.342849	1502.67114	2.014	0.0015152	0.94787	0.00071312	2.9619	0.0022283	752.343798781328	8.7068	0.24851	8.7068	8.6357	8.8842	0	426	52	1.03977710643793	0.0341967320242422	1.03977710643793	420.287211782086	0	13.8226251237298						800	29	5	NaN	NaN	NaN	1.4643E-16	1	18587	151.66	98.147	1	467300			16379	1752	13800	14200	16379	16379		
QFQDAGHFDAENIK	14	Unmodified	_QFQDAGHFDAENIK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.586471	1618.73758	0.76248	0.00041219	0.1333	7.2058E-05	0.89578	0.00048424	540.586472211565	7.19	0.1064	7.19	7.1634	7.2698	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	533.218775934459	0	12.3198286119845						179	13	2	NaN	NaN	NaN	0.00040387	1	22142	78.043	65.447	1	109320			16380	1703	13801	14201	16380	16380		
QFTTVVADTGDFHAIDEYK	19	Unmodified	_QFTTVVADTGDFHAIDEYK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	719.676015	2156.00621	1.5413	0.0011092	-1.0486	-0.00075465	0.49266	0.00035456	720.009544111859	12.724	0.088678	12.724	12.689	12.777	0	534	49	0.967195187796614	0.032338985271784	0.967195187796614	584.796989022378	0	19.5531795997264						384	11	4	NaN	NaN	NaN	2.0115E-05	1	34119	100.56	90.073	1	115120			16381	1002	13802	14202	16381	16381		
QFTYYPLVEDK	11	Unmodified	_QFTYYPLVEDK_			0	0	0	Q00653	Q00653	Q00653	NFKB2	Nuclear factor NF-kappa-B p100 subunit;Nuclear factor NF-kappa-B p52 subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.848093	1401.68163	1.0818	0.00075926	2.9799	0.0020914	4.0617	0.0028507	701.84993684005	12.139	0.088702	12.139	12.103	12.192	0	420	25	1.04379886199097	0.0160848033247041	1.04379886199097	422.190140541487	0	6.50589459667151						152	11	3	NaN	NaN	NaN	0.030914	1	15496	20.183	11.709	1	29884			16382	1505	13803	14203	16382	16382		
QFVFDLHSGK	10	Unmodified	_QFVFDLHSGK_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	393.204862	1176.59276	-2.566	-0.001009	1.1715	0.00046063	-1.3946	-0.00054835	393.20525744408	9.4076	0.11526	9.4076	9.3544	9.4696	0	864	19	0.743159753061487	0.01231382719818	0.743159753061487	451.721047465163	0	7.48481722449617						89	14	2	NaN	NaN	NaN	0.053599	1	8784	23.053	17.305	1	17479			16383	2719	13804	14204	16383	16383		
QFVFDLHSGK	10	Unmodified	_QFVFDLHSGK_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.303655	1176.59276	0.73721	0.00043444	6.2898	0.0037066	7.027	0.004141	589.810620278206	9.3987	0.14188	9.3987	9.3366	9.4785	0	549	46	0.957085760909907	0.0303534869943584	0.957085760909907	387.839483553653	0	12.3001315041533						291	17	3	NaN	NaN	NaN	0.0010908	1	8789	81.163	58.777	1	94082			16384	2719	13804	14204	16384	16384		
QFVTPADVVSGNPK	14	Unmodified	_QFVTPADVVSGNPK_			0	0	0	P13797;Q14651	P13797;Q14651	P13797	PLS3;PLS1	Plastin-3;Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.882998	1457.75144	1.9327	0.0014106	-1.2885	-0.00094045	0.6442	0.00047019	729.882349717914	10.081	0.29258	10.081	9.9041	10.197	0	456	64	1.01965166402748	0.0422955594974614	1.01965166402748	412.268221960085	0	17.101051002017						1518	34	4	NaN	NaN	NaN	0.0045763	1	17197	51.454	43.896	1	676790			16385	683;1760	13805	14205	16385	16385		
QFVVFEGNHYFYSPYPTK	18	Unmodified	_QFVVFEGNHYFYSPYPTK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1112.03092	2222.04729	0.66078	0.00073481	0.20531	0.00022831	0.86608	0.00096311	1112.53260311845	14.019	0.12413	14.019	13.966	14.09	0	78	40	1.27121832677567	0.0257296295668654	1.27121832677567	512.31672915399	0	10.3693593652591						339	15	3	NaN	NaN	NaN	0.0009247	1	34911	49.967	47.865	1	72411			16386	518	13806	14206	16386	16386		
QFVVFEGNHYFYSPYPTK	18	Unmodified	_QFVVFEGNHYFYSPYPTK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.689707	2222.04729	0.62406	0.00046286	0.32389	0.00024022	0.94795	0.00070308	742.024205001221	14.019	0.1241	14.019	13.974	14.099	0	576	94	0.938871150116794	0.0626958691087505	0.938871150116794	567.563453077536	0	37.9007108277137						916	15	4	NaN	NaN	NaN	2.4242E-10	1	34912	114.5	104.59	1	185400			16387	518	13806	14206	16387	16387		
QFYINVEREEWK	12	Unmodified	_QFYINVEREEWK_			0	0	1	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.607095	1639.79946	0.42764	0.00023418	2.5868	0.0014165	3.0144	0.0016507	547.609677044625	10.879	0.15076	10.879	10.835	10.986	0	684	25	0.86578508874114	0.016279679599705	0.86578508874114	524.533591708039	0	9.86300055676111						339	18	4	NaN	NaN	NaN	0.038629	1	22751	40.386	29.031	1	179990			16388	1311;1739	13807	14207	16388	16388		
QGADTLAFMSLLEEK	15	Unmodified	_QGADTLAFMSLLEEK_			0	0	0	Q13505	Q13505	Q13505	MTX1	Metaxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.913638	1651.81272	1.743	0.0014413	3.6575	0.0030244	5.4005	0.0044658	827.418622825621	18.479	0.062136	18.479	18.461	18.523	0	345	43	1.09397730668811	0.0280631418672823	1.09397730668811	441.830838246217	0	11.3340207509247						169	8	3	NaN	NaN	NaN	8.7104E-05	1	23107	83.214	70.531	1	29416			16389	1674	13808	14208	16389	16389		
QGAIVAVTGDGVNDSPALK	19	Unmodified	_QGAIVAVTGDGVNDSPALK_			0	0	0	P05023;P13637;P50993	P05023	P05023	ATP1A1;ATP1A3;ATP1A2	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.478522	1810.94249	2.232	0.0020232	-1.228	-0.0011132	1.004	0.00091007	906.476975886963	10.179	0.14189	10.179	10.117	10.259	0	282	115	1.13599383354359	0.0759306569486571	1.13599383354359	458.464806453047	0	30.6441222776963						640	17	4	NaN	NaN	NaN	7.7469E-08	1	27505	116.36	97.549	1	151480			16390	522	13809	14209	16390	16390		
QGDNCDSIIR	10	Unmodified	_QGDNCDSIIR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.266944	1176.51934	1.869	0.0011013	0.35465	0.00020898	2.2237	0.0013103	589.267263767051	4.379	0.23054	4.379	4.3258	4.5563	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	365.668837904548	0	7.40364060925668						333	27	3	NaN	NaN	NaN	0.0076033	1	8776	57.032	37.776	1	112370			16391	3161	13810	14210	16391	16391		
QGDTGDWIGTFLGHK	15	Unmodified	_QGDTGDWIGTFLGHK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.5986	1630.77397	-0.64575	-0.00035167	0.054357	2.9603E-05	-0.59139	-0.00032207	544.598696272541	15.198	0.18621	15.198	15.145	15.331	0	723	46	0.839303037468863	0.030590200468438	0.839303037468863	508.513069847653	0	18.5338501745117						696	22	5	NaN	NaN	NaN	1.2119E-07	1	22510	152.23	129.33	1	551720			16392	3394	13811	14211	16392	16392		
QGDTGDWIGTFLGHK	15	Unmodified	_QGDTGDWIGTFLGHK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.394261	1630.77397	2.0807	0.0016987	2.8695	0.0023427	4.9502	0.0040413	816.89822902666	15.198	0.22166	15.198	15.03	15.251	0	342	58	1.09598084995137	0.038067338257582	1.09598084995137	442.687520676872	0	15.3761223042944						380	26	2	NaN	NaN	NaN	4.2046E-08	1	22512	132.9	118.45	1	170990			16393	3394	13811	14211	16393	16393		
QGEDNSTAQDTEELEK	16	Unmodified	_QGEDNSTAQDTEELEK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.387224	1792.7599	3.4828	0.0031254	-1.9135	-0.0017171	1.5693	0.0014083	897.38549130218	4.4677	0.133	4.4677	4.4322	4.5652	0	363	52	1.08195024817156	0.0340931168353487	1.08195024817156	436.687534327264	0	13.7603731350123						400	16	4	NaN	NaN	NaN	0.0016107	1	27039	83.474	81.173	1	97744			16394	2165	13812	14212	16394	16394		
QGEEVFQSLSK	11	Unmodified	_QGEEVFQSLSK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.314417	1250.61428	1.331	0.0008336	-0.35331	-0.00022128	0.97765	0.00061232	626.314758374521	8.5027	0.17733	8.5027	8.4584	8.6357	0	573	43	0.940896116921038	0.0283436532440857	0.940896116921038	381.017356817999	0	11.4778067922813						288	21	3	NaN	NaN	NaN	0.00081769	1	10931	96.957	70.5	1	90933			16395	2420	13813	14213	16395	16395		
QGFDFLCMPVFHPR	14	Unmodified	_QGFDFLCMPVFHPR_			0	0	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.277927	1749.81195	-0.63261	-0.00036962	-0.58839	-0.00034378	-1.221	-0.0007134	584.277773667288	17.521	0.15962	17.521	17.442	17.601	0	675	55	0.871889544407995	0.0366394639132938	0.871889544407995	527.953975226508	0	22.1862399282767						619	19	4	NaN	NaN	NaN	0.00017705	1	25877	70.389	52.974	1	193790			16396	115	13814	14214	16396	16396		
QGFDFLCMPVFHPR	14	Oxidation (M)	_QGFDFLCM(Oxidation (M))PVFHPR_	QGFDFLCM(1)PVFHPR	QGFDFLCM(82)PVFHPR	0	1	0	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.609565	1765.80687	-0.96769	-0.00057056	0.36025	0.00021241	-0.60744	-0.00035815	589.608952050814	14.701	0.070952	14.701	14.675	14.746	-1.7764E-15	705	22	0.851531465363931	0.0142595640059772	0.851531465363931	515.58990034435	0	8.63395832549008						108	9	3	NaN	NaN	NaN	9.0462E-05	1	26289	81.799	75.422	1	18955			16397	115	13814	14215	16397	16397	34	
QGFDLNVPGGEIDASLK	17	Unmodified	_QGFDLNVPGGEIDASLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.446691	1758.87883	1.2618	0.001111	3.3339	0.0029353	4.5957	0.0040462	880.449863134257	14.861	0.11527	14.861	14.799	14.914	0	297	37	1.12600091227925	0.0239912663055373	1.12600091227925	454.534057577016	0	9.68458151440842						285	14	4	NaN	NaN	NaN	3.8702E-05	1	26112	88.42	64.616	1	73581			16398	1584	13815	14216	16398	16398		
QGFGELLQAVPLADSFR	17	Unmodified	_QGFGELLQAVPLADSFR_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.659859	1846.95775	-0.067703	-4.175E-05	0.41109	0.0002535	0.34339	0.00021175	616.994179388654	19.481	0.035459	19.481	19.472	19.508	0	567	13	0.944945209309785	0.0080959424177417	0.944945209309785	571.954885987946	0	4.90029874418508						49	5	3	NaN	NaN	NaN	0.059876	1	28414	9.9112	8.0692	1	8219.5			16399	866	13816	14217	16399	16399		
QGFGELLQAVPLADSFR	17	Unmodified	_QGFGELLQAVPLADSFR_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.48615	1846.95775	1.8099	0.0016732	0.61708	0.00057048	2.427	0.0022437	924.988392149064	19.481	0.195	19.481	19.401	19.596	0	285	55	1.13399579921816	0.0359671056362876	1.13399579921816	457.590603122926	0	14.5134660746028						770	23	5	NaN	NaN	NaN	6.4255E-19	1	28417	171.51	122.81	1	291520			16400	866	13816	14217	16400	16400		
QGFWEEFETLQQQECK	16	Unmodified	_QGFWEEFETLQQQECK_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.96238	2085.91021	0.54254	0.00056639	3.2832	0.0034276	3.8258	0.003994	1044.46668731915	16.768	0.09753	16.768	16.723	16.821	0	189	34	1.1977968526266	0.0218849460359061	1.1977968526266	482.922672682297	0	8.82348004838366						320	12	4	NaN	NaN	NaN	0.004938	1	33113	47.57	46.096	1	76021			16401	1556	13817	14218	16401	16401		
QGGDVLQNEEGETTSHLMGMFYR	23	Unmodified	_QGGDVLQNEEGETTSHLMGMFYR_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	867.056572	2598.14789	0.85065	0.00073756	1.689	0.0014645	2.5397	0.002202	867.392219661857	15.712	0.070921	15.712	15.677	15.748	0	465	43	1.01360860968299	0.0282106679353067	1.01360860968299	612.192483323278	0	17.0384887169863						310	9	4	NaN	NaN	NaN	0.00031428	1	37237	67.927	63.769	1	56906			16402	1013	13818	14219	16402	16402		
QGGLGPMNIPLVSDPK	16	Unmodified	_QGGLGPMNIPLVSDPK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.932165	1621.84978	2.8231	0.0022921	1.4925	0.0012118	4.3156	0.0035039	811.933760896499	14.648	0.37244	14.648	14.489	14.861	1.7764E-15	315	118	1.11400032671325	0.0781168032554393	1.11400032671325	449.986790262702	0	31.5543260801452						4137	43	6	NaN	NaN	NaN	2.2554E-24	1	22250	199.3	168.95	1	9353600			16403	1564	13819	14220	16403	16403		
QGGLGPMNIPLVSDPK	16	Oxidation (M)	_QGGLGPM(Oxidation (M))NIPLVSDPK_	QGGLGPM(1)NIPLVSDPK	QGGLGPM(81)NIPLVSDPK	0	1	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.929622	1637.84469	1.6947	0.0013895	-0.074858	-6.1378E-05	1.6198	0.0013281	819.929959760533	11.837	0.51432	11.837	11.624	12.139	0	309	91	1.11800162319566	0.0600856660790769	1.11800162319566	451.565719470077	0	24.2688619317763						2197	59	5	NaN	NaN	NaN	0.001362	1	22712	80.815	69.459	1	1365700			16404	1564	13819	14221	16404	16404	545	
QGGPTYYIDTNALR	14	Unmodified	_QGGPTYYIDTNALR_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.888812	1567.76307	2.1347	0.0016755	0.19528	0.00015328	2.33	0.0018288	784.889526881231	11.137	0.19508	11.137	11.039	11.234	0	414	55	1.04781950764076	0.0361658587577258	1.04781950764076	423.37750028335	0	14.6130232972301						711	23	4	NaN	NaN	NaN	0.0057081	1	20586	57.003	53.02	1	260230			16405	470	13820	14222	16405	16405		
QGIETPEDQNDLR	13	Unmodified	_QGIETPEDQNDLR_			0	0	0	Q15637	Q15637	Q15637	SF1	Splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.857709	1513.70086	2.2616	0.001714	0.57985	0.00043944	2.8414	0.0021534	757.858142508783	6.117	0.18624	6.117	6.0283	6.2146	0	459	28	1.01763759082241	0.0181241570782431	1.01763759082241	411.310867674177	0	7.32545931964916						249	22	2	NaN	NaN	NaN	0.0029504	1	18917	67.548	54.373	1	82908			16406	1858	13821	14223	16406	16406		
QGIETPEDQNDLRK	14	Unmodified	_QGIETPEDQNDLRK_			0	0	1	Q15637	Q15637	Q15637	SF1	Splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.272552	1641.79583	0.16658	9.1332E-05	1.7601	0.000965	1.9266	0.0010563	548.273394056485	4.5652	0.1419	4.5652	4.512	4.6539	0	738	25	0.829104889055312	0.0163227098451795	0.829104889055312	502.305882903763	0	9.88896976534159						262	17	4	NaN	NaN	NaN	1.2466E-05	1	22803	99.276	94.125	1	76826			16407	1858	13822	14224	16407	16407		
QGIVPPGLTENELWR	15	Unmodified	_QGIVPPGLTENELWR_			0	0	0	Q9H9B4	Q9H9B4	Q9H9B4	SFXN1	Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.954486	1707.89442	2.2974	0.0019642	-2.5726	-0.0021994	-0.27518	-0.00023527	854.950821858549	15.437	0.19518	15.437	15.384	15.579	1.7764E-15	285	100	1.13399579921816	0.0660169326300004	1.13399579921816	457.868240550382	0	26.6553516429881						1116	23	4	NaN	NaN	NaN	0.0053237	1	24704	51.454	42.647	1	296320			16408	2933	13823	14225	16408	16408		
QGLEQFINK	9	Unmodified	_QGLEQFINK_			0	0	0	O60493;Q9UMY4	O60493;Q9UMY4	O60493	SNX3;SNX12	Sorting nexin-3;Sorting nexin-12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.790381	1075.56621	0.83663	0.00045077	-1.153	-0.0006212	-0.31633	-0.00017044	538.789703652923	9.1858	0.23056	9.1858	9.0617	9.2923	0	654	49	0.886123392477847	0.0325051879347241	0.886123392477847	359.474042595085	0	13.1863930141088						446	27	3	NaN	NaN	NaN	0.00013496	1	6105	81.642	42.318	1	191500			16409	261;3290	13824	14226	16409	16409		
QGLFPNNYVTK	11	Unmodified	_QGLFPNNYVTK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.83532	1279.65609	1.0761	0.00068961	-0.46127	-0.0002956	0.61485	0.00039401	641.336807794283	10.197	0.1064	10.197	10.143	10.25	0	510	34	0.983355730988811	0.0222099939443385	0.983355730988811	398.112743219056	0	8.99174259875218						210	13	3	NaN	NaN	NaN	0.036609	1	11750	40.386	25.624	1	45504			16410	1611	13825	14227	16410	16410		
QGLLPLTFADPADYNK	16	Unmodified	_QGLLPLTFADPADYNK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.954152	1761.89375	1.5507	0.0013677	0.74226	0.00065464	2.293	0.0020223	881.954930732303	17.14	0.22168	17.14	17.043	17.264	0	258	52	1.15196821829984	0.0339339081385672	1.15196821829984	465.010095432364	0	13.6979559081907						860	26	4	NaN	NaN	NaN	2.0261E-05	1	26200	85.813	75.026	1	206310			16411	2674	13826	14228	16411	16411		
QGLLPVLESLK	11	Unmodified	_QGLLPVLESLK_			0	0	0	CON__P15497	CON__P15497	CON__P15497			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.866089	1195.71762	-0.29892	-0.00017901	-0.76304	-0.00045696	-1.062	-0.00063597	598.865576080471	16.706	0.24827	16.706	16.573	16.821	0	576	40	0.938871150116794	0.0263245737571987	0.938871150116794	380.387888822527	0	10.6655200070936						609	29	4	NaN	NaN	NaN	0.0015755	1	9325	46.033	38.882	1	193620		+	16412	30	13827	14229	16412	16412		
QGLYELSASNFELHVAQGDHFIK	23	Unmodified	_QGLYELSASNFELHVAQGDHFIK_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	651.577677	2602.2816	0.95279	0.00062082	0.68833	0.0004485	1.6411	0.0010693	651.828740204827	14.56	0.14186	14.56	14.524	14.666	0	579	34	0.936845902828289	0.0222777233789591	0.936845902828289	754.431892053062	0	17.9400101432725						371	17	5	NaN	NaN	NaN	4.2558E-13	1	37250	144.38	140.62	1	104710			16413	2294	13828	14230	16413	16413		
QGLYELSASNFELHVAQGDHFIK	23	Unmodified	_QGLYELSASNFELHVAQGDHFIK_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	868.434477	2602.2816	2.1363	0.0018552	2.9319	0.0025462	5.0682	0.0044014	868.770707738106	14.56	0.12414	14.56	14.524	14.648	0	279	43	1.13799159301878	0.0279782603553778	1.13799159301878	687.31066339585	0	16.897977808874						422	15	5	NaN	NaN	NaN	4.6324E-11	1	37251	99.442	85.438	1	100740			16414	2294	13828	14230	16414	16414		
QGNLFDFLR	9	Unmodified	_QGNLFDFLR_			0	0	0	Q9H857	Q9H857	Q9H857	NT5DC2	5-nucleotidase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.290548	1108.56654	-1.2737	-0.00070728	-2.2463	-0.0012474	-3.52	-0.0019546	555.289269068859	16.954	0.23057	16.954	16.892	17.122	0	663	58	0.880024865079826	0.0386133059096635	0.880024865079826	356.865636877352	0	15.6583780211052						401	27	3	NaN	NaN	NaN	0.011627	1	6949	46.447	35.745	1	83829			16415	2923	13829	14231	16415	16415		
QGQDNLSSVK	10	Unmodified	_QGQDNLSSVK_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.272552	1074.53055	1.5354	0.00082647	0.24549	0.00013214	1.7809	0.00095861	538.272335543349	2.836	0.23055	2.836	2.8006	3.0311	0	663	34	0.880024865079826	0.0223674774771112	0.880024865079826	357.004395145284	0	9.07393425402535						314	27	3	NaN	NaN	NaN	0.0074796	1	6063	57.032	48.269	1	81835			16416	892	13830	14232	16416	16416		
QGQETAVAPSLVAPALNK	18	Unmodified	_QGQETAVAPSLVAPALNK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.663381	1792.96831	0.57281	0.00034292	-0.7863	-0.00047073	-0.21349	-0.00012781	598.997758440884	11.261	0.12415	11.261	11.19	11.314	0	609	37	0.916577990479294	0.0243282375267269	0.916577990479294	554.909199359121	0	14.7286569697307						330	15	4	NaN	NaN	NaN	0.00068552	1	27053	79.795	51.467	1	82636			16417	1863	13831	14233	16417	16417		
QGQETAVAPSLVAPALNK	18	Unmodified	_QGQETAVAPSLVAPALNK_			0	0	0	Q15691	Q15691	Q15691	MAPRE1	Microtubule-associated protein RP/EB family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.491433	1792.96831	2.5275	0.0022684	-2.1448	-0.001925	0.38268	0.00034345	897.489349229214	11.261	0.20398	11.261	11.181	11.385	0	267	64	1.14597988355104	0.0419472001416383	1.14597988355104	462.530217976184	0	16.9303561986467						925	24	5	NaN	NaN	NaN	5.4302E-14	1	27054	155.34	113.27	1	417360			16418	1863	13831	14233	16418	16418		
QGQGQSEPGEYEQR	14	Unmodified	_QGQGQSEPGEYEQR_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.850415	1591.68628	2.4979	0.0019904	-0.39017	-0.00031091	2.1077	0.0016795	796.849994000642	2.8183	0.10641	2.8183	2.774	2.8804	0	480	25	1.00353128488872	0.0161292915341544	1.00353128488872	405.429229498887	0	6.51627541415439						139	13	2	NaN	NaN	NaN	0.0011975	1	21311	51.454	49.152	1	28225			16419	1061	13832	14234	16419	16419		
QGQYSPMAIEEQVAVIYAGVR	21	Unmodified	_QGQYSPMAIEEQVAVIYAGVR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.391332	2308.15217	0.68515	0.00052783	-1.0513	-0.00080991	-0.36614	-0.00028207	770.389719776324	18.976	0.070927	18.976	18.94	19.011	0	447	40	1.02569221487577	0.0261865738228477	1.02569221487577	619.904632062599	0	15.8265590546561						127	9	3	NaN	NaN	NaN	0.072254	1	35704	11.054	10.72	1	24618			16420	840	13833	14235	16420	16420		
QGQYSPMAIEEQVAVIYAGVR	21	Unmodified	_QGQYSPMAIEEQVAVIYAGVR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.08336	2308.15217	-0.16889	-0.00019508	0.19479	0.000225	0.025904	2.9922E-05	1155.58553174154	18.984	0.10639	18.984	18.922	19.029	0	78	34	1.27121832677567	0.0217742051168754	1.27121832677567	512.197953883148	0	8.77323987027734						271	13	3	NaN	NaN	NaN	5.3591E-06	1	35705	70.598	69.327	1	59812			16421	840	13833	14235	16421	16421		
QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK	35	Unmodified	_QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVK_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	890.140398	3556.53249	2.6599	0.0023677	-0.24983	-0.00022239	2.4101	0.0021453	890.892358171318	11.11	0.035486	11.11	11.092	11.128	0	357	19	1.08596037261705	0.0120320319459946	1.08596037261705	873.265111884591	0	9.67544856005804						59	5	3	NaN	NaN	NaN	0.045513	1	38672	7.7715	7.7596	1	129570			16422	1648	13834	14236	16422	16422		
QGTAVEVEAESLDPTVK	17	Unmodified	_QGTAVEVEAESLDPTVK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.949263	1771.88397	2.7535	0.0024422	-1.3291	-0.0011788	1.4244	0.0012634	886.947717916205	10.773	0.11526	10.773	10.702	10.817	0	264	82	1.14797626962532	0.0539618197779765	1.14797626962532	463.378290141775	0	21.7815789779509						405	14	2	NaN	NaN	NaN	2.0697E-06	1	26467	108.91	80.636	1	98646			16423	1126	13835	14237	16423	16423		
QGTPLIAFSLLPHEQK	16	Unmodified	_QGTPLIAFSLLPHEQK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.993611	1777.97267	1.6184	0.0014404	-0.68855	-0.0006128	0.92986	0.00082757	890.493739967946	15.402	0.12413	15.402	15.331	15.455	0	159	52	1.21767724410157	0.0337943541860266	1.21767724410157	491.499875255532	0	13.640659663496						358	15	3	NaN	NaN	NaN	8.8348E-09	1	26634	105.08	92.395	1	71986			16424	1923	13836	14238	16424	16424		
QGTPLIAFSLLPHEQK	16	Unmodified	_QGTPLIAFSLLPHEQK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.664833	1777.97267	0.67106	0.00039838	0.83579	0.00049618	1.5068	0.00089456	593.664987413142	15.411	0.16858	15.411	15.331	15.5	0	552	46	0.955063035883597	0.0303366841243174	0.955063035883597	578.24596335574	0	18.3674422288318						346	20	4	NaN	NaN	NaN	5.0433E-05	1	26635	106.47	91.491	1	104830			16425	1923	13836	14238	16425	16425		
QGTTPPIWHLTDK	13	Unmodified	_QGTTPPIWHLTDK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.596419	1492.76743	-1.6704	-0.00083287	-0.48362	-0.00024113	-2.154	-0.001074	498.596106902286	9.5317	0.133	9.5317	9.4696	9.6026	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	458.075553068602	0	9.94693666205541						288	16	4	NaN	NaN	NaN	0.0014649	1	18329	60	44.121	1	96049			16426	1273	13837	14239	16426	16426		
QGTTPPIWHLTDK	13	Unmodified	_QGTTPPIWHLTDK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.596419	1492.76743	-1.2185	-0.00060755	0.40498	0.00020192	-0.81353	-0.00040562	498.596457402434	9.5317	0.1152	9.5317	9.4874	9.6026	0	747	28	0.822982596624503	0.0183694328474171	0.822982596624503	499.012519267589	0	11.1382391320345						262	14	3	NaN	NaN	NaN	0.024195	1	18330	47.334	34.738	1	67496			16427	1273	13837	14239	16427	16427		
QGVEDAFYTLVR	12	Unmodified	_QGVEDAFYTLVR_			0	0	0	P01112	P01112	P01112	HRAS	GTPase HRas;GTPase HRas, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.356616	1396.69868	1.1988	0.00083837	-1.1137	-0.00077884	0.085116	5.9526E-05	699.355869886615	15.517	0.20406	15.517	15.455	15.659	0	486	58	0.999498404980629	0.0383097280775055	0.999498404980629	404.285836350726	0	15.4958530989185						470	24	4	NaN	NaN	NaN	5.4002E-05	1	15342	113.46	99.004	1	121400			16428	489	13838	14240	16428	16428		
QGYVLSSIEGR	11	Unmodified	_QGYVLSSIEGR_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.817127	1207.6197	0.92762	0.00056104	-0.83899	-0.00050743	0.088637	5.3609E-05	604.816487717605	9.1858	0.16848	9.1858	9.1238	9.2923	0	558	34	0.951016745717027	0.0222592210224549	0.951016745717027	385.265407172912	0	9.01740993435629						274	20	4	NaN	NaN	NaN	0.00025544	1	9676	83.438	39.703	1	81321			16429	220	13839	14241	16429	16429		
QHAAVLEEGVLDPK	14	Unmodified	_QHAAVLEEGVLDPK_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.401555	1504.78856	2.316	0.0017449	-1.2099	-0.00091154	1.1061	0.00083337	753.401014920074	7.8108	0.20399	7.8108	7.7132	7.9172	0	378	34	1.07192009927972	0.0220724150021865	1.07192009927972	433.274141531919	0	8.92175327996438						369	24	3	NaN	NaN	NaN	1.6174E-05	1	18660	91.245	82.268	1	82924			16430	422	13840	14242	16430	16430		
QHEADADLINAGK	13	Unmodified	_QHEADADLINAGK_			0	0	0	P55809	P55809	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.338955	1380.66336	2.474	0.0017103	-1.6253	-0.0011237	0.84864	0.0005867	691.337486296187	4.4943	0.2128	4.4943	4.4588	4.6716	0	513	52	0.981336640919867	0.0343150509571248	0.981336640919867	396.984800560839	0	13.8816315343937						448	25	4	NaN	NaN	NaN	7.471E-06	1	14847	106	83.96	1	127140			16431	1279	13841	14243	16431	16431		
QHFIQEEQILEIDCTMLTPEPVLK	24	Unmodified	_QHFIQEEQILEIDCTMLTPEPVLK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	971.157515	2910.45072	1.4691	0.0014267	0.22215	0.00021575	1.6913	0.0016425	971.4917691177	17.513	0.062099	17.513	17.486	17.548	0	384	58	1.06790610341098	0.0381566484153506	1.06790610341098	644.618292189581	0	23.0324309025095						350	8	5	NaN	NaN	NaN	0.00021786	1	38089	54.418	53.819	1	52558			16432	1035	13842	14244	16432	16432		
QHFISFDTDR	10	Unmodified	_QHFISFDTDR_			0	0	0	P30626	P30626	P30626	SRI	Sorcin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.299101	1264.58365	2.0028	0.0012683	-1.8409	-0.0011658	0.1619	0.00010253	633.29788403254	7.6334	0.31046	7.6334	7.5358	7.8463	0	552	49	0.955063035883597	0.0323703311033066	0.955063035883597	386.707623086405	0	13.1068351817202						519	36	3	NaN	NaN	NaN	0.024276	1	11345	53.517	44.54	1	232000			16433	915	13843	14245	16433	16433		
QHFPATPLLDYALEVEK	17	Unmodified	_QHFPATPLLDYALEVEK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.678919	1970.01493	-0.6128	-0.00040303	-1.91	-0.0012562	-2.5228	-0.0016592	658.012128878764	16.502	0.36352	16.502	16.333	16.697	0	687	70	0.863749705078866	0.0468138540179923	0.863749705078866	522.56576024099	0	28.3222293111976						1981	42	5	NaN	NaN	NaN	4.2784E-05	1	31111	119.79	108.31	1	638000			16434	1235	13844	14246	16434	16434		
QHGDVVSAIR	10	Unmodified	_QHGDVVSAIR_			0	0	0	O14745	O14745	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.291079	1080.56761	1.658	0.00089744	-0.12139	-6.5708E-05	1.5366	0.00083173	541.291183675164	3.7406	0.11528	3.7406	3.714	3.8292	0	693	34	0.85967808974117	0.0223923326891349	0.85967808974117	348.725548828058	0	9.08337504438447						178	14	3	NaN	NaN	NaN	0.018671	1	6228	49.16	41.513	1	44659			16435	116	13845	14247	16435	16435		
QHGIPIPVTPK	11	Unmodified	_QHGIPIPVTPK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.850773	1185.68699	1.472	0.00087412	0.13949	8.2839E-05	1.6114	0.00095696	593.850771365298	7.0747	0.25724	7.0747	6.9683	7.2255	0	522	121	0.975277694896658	0.0809595778455752	0.975277694896658	395.176292415442	0	32.80430381618						1683	30	4	NaN	NaN	NaN	1.5464E-06	1	9042	102.55	76.089	1	626740			16436	488	13846	14248	16436	16436		
QHITLALEK	9	Unmodified	_QHITLALEK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.808574	1051.60259	1.4055	0.00074041	-0.69038	-0.0003637	0.71508	0.00037671	526.808246070954	5.9929	0.17741	5.9929	5.9573	6.1347	0	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	361.226836970394	0	9.89401514026139						295	21	3	NaN	NaN	NaN	0.046415	1	5516	46.447	15.885	1	114480			16437	1915	13847	14249	16437	16437		
QHLEIELK	8	Unmodified	_QHLEIELK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.287474	1008.5604	0.59496	0.00030063	2.0003	0.0010107	2.5952	0.0013113	505.288268555018	6.3742	0.12413	6.3742	6.3387	6.4629	0	642	25	0.894250814548268	0.0162503358179286	0.894250814548268	363.075685346709	0	6.59781542070942						203	15	3	NaN	NaN	NaN	0.0022865	1	4486	102.46	39.584	1	40900			16438	718	13848	14250	16438	16438		
QHLEITGGQVR	11	Unmodified	_QHLEITGGQVR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.336018	1236.65748	2.3455	0.0014526	-2.1331	-0.0013211	0.21234	0.00013151	619.334328886711	4.3879	0.15074	4.3879	4.3081	4.4588	0	570	37	0.942920803299286	0.0242878309785073	0.942920803299286	381.884317453881	0	9.836607404576						250	18	4	NaN	NaN	NaN	0.0060449	1	10531	46.033	24.758	1	59124			16439	1101	13849	14251	16439	16439		
QHLENDPGSNEDTDIPK	17	Unmodified	_QHLENDPGSNEDTDIPK_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.932133	1907.84971	2.9125	0.0027813	-1.5396	-0.0014702	1.3729	0.001311	954.930493382672	4.6184	0.053207	4.6184	4.5918	4.645	0	285	52	1.13399579921816	0.0339899718609518	1.13399579921816	457.481727058283	0	13.7123885646944						182	7	3	NaN	NaN	NaN	0.00026359	1	29768	63.908	58.21	1	32522			16440	198	13850	14252	16440	16440		
QHLENDPGSNEDTDIPK	17	Unmodified	_QHLENDPGSNEDTDIPK_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.957181	1907.84971	0.94825	0.00060399	2.2583	0.0014384	3.2066	0.0020424	636.958643571685	4.6184	0.070952	4.6184	4.5918	4.6627	0	666	31	0.877991458330206	0.0203354810451108	0.877991458330206	531.302903768631	0	12.3057007289653						171	9	4	NaN	NaN	NaN	6.6655E-07	1	29769	128.41	114.61	1	50039			16441	198	13850	14252	16441	16441		
QHLFYGQYEGK	11	Unmodified	_QHLFYGQYEGK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.330402	1368.64625	1.4718	0.0010087	0.93939	0.00064379	2.4112	0.0016525	685.33070501058	5.8598	0.17734	5.8598	5.7711	5.9485	0	498	67	0.991429299781895	0.0444230789129696	0.991429299781895	401.102533649131	0	17.9722442219605						496	21	4	NaN	NaN	NaN	0.024386	1	14449	51.872	43.871	1	119760			16442	2594	13851	14253	16442	16442		
QHLVDFLAAVGGHFR	15	Unmodified	_QHLVDFLAAVGGHFR_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.298596	1665.87396	-0.083433	-4.6414E-05	-2.6123	-0.0014532	-2.6957	-0.0014996	556.296983687267	15.517	0.062071	15.517	15.482	15.544	0	657	22	0.884090832094921	0.0142279235023115	0.884090832094921	535.55394268025	0	8.61882088490847						100	8	3	NaN	NaN	NaN	0.049677	1	23517	34.193	20.394	1	21549			16443	3360	13852	14254	16443	16443		
QHMDITGEENPLNK	14	Unmodified	_QHMDITGEENPLNK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.591116	1624.75152	-1.1424	-0.00061985	0.33989	0.00018442	-0.80249	-0.00043543	542.591558313596	7.0392	0.14195	7.0392	6.9594	7.1014	0	819	22	0.773912161060781	0.0143371313465699	0.773912161060781	468.90896666788	0	8.68678615346602						276	17	4	NaN	NaN	NaN	1.2265E-11	1	22327	215.84	205.06	1	69423			16444	2892	13853	14255	16444	16444		
QHMDITGEENPLNK	14	Unmodified	_QHMDITGEENPLNK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.383036	1624.75152	2.1319	0.001734	-1.077	-0.00087604	1.0548	0.00085799	813.383136217655	7.0303	0.21289	7.0303	6.9328	7.1457	0	390	37	1.06389100039157	0.0240939446089616	1.06389100039157	429.739250976617	0	9.73230688624722						418	25	4	NaN	NaN	NaN	7.5832E-25	1	22328	220.81	208.79	1	89798			16445	2892	13853	14255	16445	16445		
QHMENEMAHYACDCWDAESK	20	Unmodified	_QHMENEMAHYACDCWDAESK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	628.740976	2510.9348	0.18661	0.00011733	0.36766	0.00023116	0.55426	0.00034849	628.991963654752	8.9109	0.07996	8.9109	8.8753	8.9553	0	672	25	0.873923798053065	0.0162751600009597	0.873923798053065	703.897299070359	0	13.1087415082818						231	10	5	NaN	NaN	NaN	0.00096079	1	36882	51.07	51.07	1	52034			16446	1035	13854	14256	16446	16446		
QHMENEMAHYACDCWDAESK	20	Unmodified	_QHMENEMAHYACDCWDAESK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	837.985543	2510.9348	1.4683	0.0012304	-0.28441	-0.00023833	1.1838	0.00099205	838.319638235026	8.9109	0.088821	8.9109	8.8665	8.9553	0	561	31	0.948993180460448	0.0202398580816178	0.948993180460448	573.272419159317	0	12.226591976415						336	11	5	NaN	NaN	NaN	0.0012716	1	36883	25.185	25.185	1	81572			16447	1035	13854	14256	16447	16447		
QHNEEQSGDELLDVVTVPSGELR	23	Unmodified	_QHNEEQSGDELLDVVTVPSGELR_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.080539	2550.21979	0.92222	0.00078488	-0.38189	-0.00032502	0.54033	0.00045986	851.414549934197	14.276	0.079813	14.276	14.24	14.32	0	531	28	0.969216233931596	0.0181869004475753	0.969216233931596	585.439219402245	0	10.9854998591845						159	10	4	NaN	NaN	NaN	0.00047049	1	37029	21.134	18.388	1	24330			16448	3067	13855	14257	16448	16448		
QHPQPYIFPDSPGGTSYER	19	Unmodified	_QHPQPYIFPDSPGGTSYER_			0	0	0	Q9Y6M9	Q9Y6M9	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.007987	2175.00213	0.51527	0.00037409	0.066498	4.8278E-05	0.58177	0.00042237	726.342155581439	9.177	0.097617	9.177	9.1326	9.2303	0	630	52	0.902373728295776	0.0345295780335751	0.902373728295776	545.573391374227	0	20.8765153503271						348	12	3	NaN	NaN	NaN	0.015303	1	34372	32.61	27.793	1	68831			16449	3472	13856	14258	16449	16449		
QHTFVETESVR	11	Unmodified	_QHTFVETESVR_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.830766	1331.64698	2.3063	0.0015379	-3.9128	-0.0026092	-1.6065	-0.0010713	666.828913343628	4.3435	0.13301	4.3435	4.3081	4.4411	0	540	34	0.963152256458504	0.0222376640579702	0.963152256458504	389.77075192763	0	8.99919092009372						268	16	4	NaN	NaN	NaN	0.0036512	1	13343	48.785	45.178	1	79477			16450	1107	13857	14259	16450	16450		
QHVLDMLFSAFEK	13	Unmodified	_QHVLDMLFSAFEK_			0	0	0	P13984	P13984	P13984	GTF2F2	General transcription factor IIF subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.265793	1563.77555	-2.3407	-0.0012225	1.7242	0.00090047	-0.61658	-0.00032202	522.266515687442	18.612	0.0532	18.612	18.585	18.639	0	771	19	0.806643990516186	0.0122607746712026	0.806643990516186	488.901863083171	0	7.43117862411401						67	7	3	NaN	NaN	NaN	0.012195	1	20463	38.1	34.207	1	11930			16451	689	13858	14260	16451	16451		
QHYIDLK	7	Unmodified	_QHYIDLK_			0	0	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.747985	915.481417	0.72761	0.00033379	0.76313	0.00035008	1.4907	0.00068387	458.748329255485	4.4056	0.31921	4.4056	4.3081	4.6273	0	726	52	0.837263974740672	0.0346737156598015	0.837263974740672	340.403181261841	0	14.0971586893139						803	37	4	NaN	NaN	NaN	0.010502	1	2610	93.561	42.104	1	638080			16452	805	13859	14261	16452	16452		
QIAEEDFYEK	10	Unmodified	_QIAEEDFYEK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.29315	1270.57175	1.8453	0.0011741	1.3961	0.00088834	3.2414	0.0020625	636.293831186865	7.3585	0.22168	7.3585	7.261	7.4826	0	543	40	0.961130371139249	0.0262881524128359	0.961130371139249	389.144477420799	0	10.6436022003193						439	26	4	NaN	NaN	NaN	0.0060402	1	11518	78.932	71.374	1	135220			16453	952	13860	14262	16453	16453		
QIANSQDGYVWQVTDMNR	18	Unmodified	_QIANSQDGYVWQVTDMNR_			0	0	0	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1062.992	2123.96945	1.6771	0.0017828	-1.2495	-0.0013282	0.4276	0.00045453	1062.99188029866	12.795	0.070926	12.795	12.768	12.839	0	183	37	1.20177511391933	0.0238695716917889	1.20177511391933	484.469203973436	0	9.62249281314712						184	9	3	NaN	NaN	NaN	1.1966E-10	1	33665	130.78	124.26	1	46459			16454	621	13861	14263	16454	16454		
QIATLHAQVADMK	13	Unmodified	_QIATLHAQVADMK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.379568	1424.74458	2.3045	0.001644	-1.6521	-0.0011786	0.65239	0.0004654	713.378765850003	6.6668	0.12413	6.6668	6.6313	6.7555	0	429	43	1.03776581230406	0.0281600678501546	1.03776581230406	419.6835589967	0	11.3882316769544						379	15	4	NaN	NaN	NaN	2.8418E-07	1	16231	136.06	109.11	1	123140			16455	972	13862	14264	16455	16455		
QIATLHAQVADMK	13	Unmodified	_QIATLHAQVADMK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.922138	1424.74458	0.39042	0.00018581	0.56307	0.00026798	0.95349	0.00045379	475.922455505626	6.6668	0.062058	6.6668	6.6402	6.7023	0	660	40	0.882057989648486	0.0264342930913768	0.882057989648486	535.066837162047	0	16.0353556829684						213	8	3	NaN	NaN	NaN	0.061071	1	16233	22.142	21.739	1	52105			16456	972	13862	14264	16456	16456		
QICLVMLETLSQSPQGR	17	Unmodified	_QICLVMLETLSQSPQGR_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.004532	1958.99177	-0.28444	-0.00018602	-1.0091	-0.00065998	-1.2936	-0.000846	654.338092467653	16.839	0.12411	16.839	16.785	16.91	0	558	37	0.951016745717027	0.0242844683109597	0.951016745717027	575.384658543626	0	14.6926019651527						459	15	5	NaN	NaN	NaN	2.9552E-05	1	30889	105.94	90.415	1	144960			16457	1833	13863	14265	16457	16457		
QICVVMLESPPK	12	Unmodified	_QICVVMLESPPK_			0	0	0	P57721	P57721	P57721	PCBP3	Poly(rC)-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.867448	1399.72034	0.63722	0.00044661	0.18215	0.00012766	0.81937	0.00057427	700.866486018348	11.961	0.2217	11.961	11.855	12.077	0	456	94	1.01965166402748	0.0624622210711007	1.01965166402748	412.428868710101	0	25.2647292034234						1469	26	4	NaN	NaN	NaN	0.0076537	1	15447	48.785	34.791	1	468250			16458	1295	13864	14266	16458	16458		
QICVVMLETLSQSPPK	16	Unmodified	_QICVVMLETLSQSPPK_			0	0	0	Q15366	Q15366	Q15366	PCBP2	Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.478622	1828.94269	1.5361	0.0014062	1.5019	0.001375	3.038	0.0027812	915.981118990741	15.571	0.15075	15.571	15.473	15.624	0	147	28	1.22562176648663	0.0178714995512526	1.22562176648663	494.599871088366	0	7.21204666554178						239	18	3	NaN	NaN	NaN	4.9089E-12	1	27945	128.57	121.43	1	48659			16459	1834	13865	14267	16459	16459		
QICVVMLETLSQSPPK	16	Unmodified	_QICVVMLETLSQSPPK_			0	0	0	Q15366	Q15366	Q15366	PCBP2	Poly(rC)-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.478622	1828.94269	1.9834	0.0018157	6.167	0.0056458	8.1504	0.0074615	915.985117750171	15.526	0.079817	15.526	15.482	15.562	0	225	70	1.17390432875292	0.0458601315237361	1.17390432875292	473.729273695379	0	18.5068631797223						360	10	3	NaN	NaN	NaN	0.0043725	1	27947	42.446	33.184	1	79078			16460	1834	13865	14267	16460	16460		
QIDNPDYK	8	Unmodified	_QIDNPDYK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.737814	991.461075	1.3584	0.00067476	1.2706	0.00063117	2.629	0.0013059	496.738629645741	3.102	0.47882	3.102	2.969	3.4479	0	711	49	0.847456455381371	0.0326091497098583	0.847456455381371	344.156521211823	0	13.2427471081921						1006	55	4	NaN	NaN	NaN	0.014287	1	4080	49.325	29.838	1	577830			16461	868	13866	14268	16461	16461		
QIDSSPVGGETDETTVSQNYR	21	Unmodified	_QIDSSPVGGETDETTVSQNYR_			0	0	0	O15027	O15027	O15027	SEC16A	Protein transport protein Sec16A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1142.02221	2282.02986	1.1122	0.0012701	0.93025	0.0010624	2.0424	0.0023325	1142.52493198728	7.5447	0.044253	7.5447	7.527	7.5713	-8.8818E-16	135	19	1.23356193185193	0.0119069825789133	1.23356193185193	497.059527444027	0	4.79787757804229						47	6	2	NaN	NaN	NaN	0.00066229	1	35479	61.503	60.135	1	10007			16462	138	13867	14269	16462	16462		
QIDSVNHINLFFTELK	16	Unmodified	_QIDSVNHINLFFTELK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.007147	1916.99961	-0.50762	-0.00032488	-0.5458	-0.00034931	-1.0534	-0.00067419	640.341148897389	16.023	0.070924	16.023	15.987	16.058	0	654	28	0.886123392477847	0.018290507163651	0.886123392477847	536.205367679311	0	11.0678357009649						153	9	3	NaN	NaN	NaN	0.015032	1	29998	24.922	19.223	1	31396			16463	408	13868	14270	16463	16463		
QIEEELWEEEFIER	14	Unmodified	_QIEEELWEEEFIER_			0	0	0	Q9BPZ3	Q9BPZ3	Q9BPZ3	PAIP2	Polyadenylate-binding protein-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.941438	1877.86832	1.6985	0.0015965	0.0905	8.5065E-05	1.789	0.0016816	940.442950039247	16.076	0.13304	16.076	16.032	16.165	0	288	40	1.13199748998575	0.0259780251845936	1.13199748998575	456.728194373645	0	10.4813806045646						325	16	3	NaN	NaN	NaN	1.0236E-16	1	29093	186.27	153.17	1	77369			16464	2690	13869	14271	16464	16464		
QIEEQTIK	8	Unmodified	_QIEEQTIK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.769114	987.523675	0.1891	9.3561E-05	-1.5209	-0.00075249	-1.3318	-0.00065893	494.768139590829	3.3326	0.22175	3.3326	3.2971	3.5189	0	750	25	0.820941264895493	0.0163317905819258	0.820941264895493	333.406765146775	0	6.6327881175124						216	26	2	NaN	NaN	NaN	0.026462	1	4008	49.325	34.79	1	58863			16465	962	13870	14272	16465	16465		
QIEILELEDLEK	12	Unmodified	_QIEILELEDLEK_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.398147	1470.78174	0.69781	0.00051386	0.14057	0.00010352	0.83838	0.00061738	736.398323148753	16.2	0.11525	16.2	16.165	16.28	0	438	34	1.03173026378327	0.022130347528504	1.03173026378327	417.117120018381	0	8.94705442898066						180	14	2	NaN	NaN	NaN	4.9455E-05	1	17619	103.69	51.814	1	58200			16466	1593	13871	14273	16466	16466		
QIEINTISASFGGLASR	17	Unmodified	_QIEINTISASFGGLASR_			0	0	0	P48637	P48637	P48637	GSS	Glutathione synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.467958	1762.92136	2.0506	0.0018096	-0.050202	-4.4302E-05	2.0004	0.0017653	882.467711503919	15.349	0.097534	15.349	15.313	15.411	0	276	37	1.13998907770044	0.0239714689101356	1.13998907770044	460.172435402251	0	9.67641659409401						314	12	4	NaN	NaN	NaN	6.266E-10	1	26226	131.06	99.639	1	92913			16467	1112	13872	14274	16467	16467		
QIELACDSQEDVDSWK	16	Unmodified	_QIELACDSQEDVDSWK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.925462	1921.83637	2.3648	0.0022747	0.15246	0.00014666	2.5172	0.0024214	962.427233670535	10.977	0.088677	10.977	10.95	11.039	0	273	37	1.14198628764525	0.0239648752236348	1.14198628764525	460.681070954748	0	9.66751046204382						220	11	3	NaN	NaN	NaN	5.9663E-05	1	30094	68.108	60.532	1	45437			16468	1167	13873	14275	16468	16468		
QIEYEYK	7	Unmodified	_QIEYEYK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.737283	971.460012	0.90689	0.00044142	1.7676	0.00086035	2.6745	0.0013018	486.738074440427	4.7425	0.20396	4.7425	4.6982	4.9021	0	696	37	0.857641857947968	0.0244296961484468	0.857641857947968	348.390974354492	0	9.92382259035907						237	24	2	NaN	NaN	NaN	0.039818	1	3658	47.349	13.536	1	70684			16469	784	13874	14276	16469	16469		
QIFETIYYGALEASCDLAK	19	Unmodified	_QIFETIYYGALEASCDLAK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.53264	2191.05072	0.63262	0.00069368	1.766	0.0019365	2.3986	0.0026302	1097.03513450767	19.853	0.070933	19.853	19.836	19.907	0	102	37	1.25537494996371	0.0237813509420215	1.25537494996371	505.976119210164	0	9.58502131938104						164	9	4	NaN	NaN	NaN	0.019808	1	34573	30.862	24.657	1	36589			16470	828	13875	14277	16470	16470		
QIFFGLAPGWVVNMADK	17	Unmodified	_QIFFGLAPGWVVNMADK_			0	0	0	Q9P015	Q9P015	Q9P015	MRPL15	39S ribosomal protein L15, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.990014	1891.96548	1.416	0.0013409	-1.3043	-0.0012351	0.11172	0.00010579	947.489513562619	19.853	0.044336	19.853	19.845	19.889	0	231	25	1.16991841121525	0.0159480534930851	1.16991841121525	472.002398467889	0	6.43422603445583						80	6	4	NaN	NaN	NaN	0.029416	1	29419	30.068	27.679	1	16270			16471	3140	13876	14278	16471	16471		
QIFNGTFVK	9	Unmodified	_QIFNGTFVK_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.290017	1052.56548	0.53405	0.0002816	0.97862	0.00051602	1.5127	0.00079761	527.288887969938	9.7002	0.21281	9.7002	9.6026	9.8154	0	663	40	0.880024865079826	0.0264306247374108	0.880024865079826	357.098671044883	0	10.7250844187899						392	25	3	NaN	NaN	NaN	0.02572	1	5544	24.121	8.6229	1	96679			16472	752	13877	14279	16472	16472		
QIGTLLAELR	10	Unmodified	_QIGTLLAELR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.334956	1112.65536	0.15002	8.3611E-05	-3.3957	-0.0018925	-3.2457	-0.0018089	557.333215071154	14.214	0.079803	14.214	14.169	14.249	0	618	25	0.910492137470517	0.0162300673431094	0.910492137470517	369.203998008318	0	6.58128225869967						157	10	3	NaN	NaN	NaN	0.059934	1	7065	41.796	34.149	1	44996			16473	2149	13878	14280	16473	16473		
QIGVEHVVVYVNK	13	Unmodified	_QIGVEHVVVYVNK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.280431	1482.81946	0.19865	9.8385E-05	0.15199	7.528E-05	0.35064	0.00017367	495.280368361803	8.5027	0.15961	8.5027	8.4495	8.6091	0	705	61	0.851531465363931	0.0407557811656295	0.851531465363931	516.354798087401	0	24.7136412577296						669	19	5	NaN	NaN	NaN	0.001315	1	18004	85.821	76.307	1	402230			16474	1131	13879	14281	16474	16474		
QIGVEHVVVYVNK	13	Unmodified	_QIGVEHVVVYVNK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.417008	1482.81946	1.8752	0.0013922	0.036994	2.7465E-05	1.9122	0.0014196	742.416764901674	8.5027	0.14187	8.5027	8.4495	8.5914	0	426	37	1.03977710643793	0.0241338680851122	1.03977710643793	420.33856261882	0	9.75631734774481						464	17	5	NaN	NaN	NaN	6.9209E-24	1	18005	232.46	205.88	1	225300			16475	1131	13879	14281	16475	16475		
QILDPAASVTGSR	13	Unmodified	_QILDPAASVTGSR_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.854241	1313.69393	1.1093	0.00072977	-5.5261	-0.0036354	-4.4168	-0.0029056	657.851714423799	8.9021	0.15976	8.9021	8.8576	9.0174	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	389.825462773038	0	7.36502671723667						260	19	3	NaN	NaN	NaN	0.0035977	1	12772	33.1	20.505	1	76775			16476	1074	13880	14282	16476	16476		
QILENELQIPVSK	13	Unmodified	_QILENELQIPVSK_			0	0	0	Q9UNN5	Q9UNN5	Q9UNN5	FAF1	FAS-associated factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.927406	1509.84026	1.3263	0.0010026	0.54291	0.0004104	1.8692	0.001413	755.928466135594	12.609	0.15072	12.609	12.538	12.689	0	402	37	1.05585747106793	0.0241072414200156	1.05585747106793	426.768545636929	0	9.7439404863353						322	18	4	NaN	NaN	NaN	0.00045885	1	18809	93.162	78.014	1	139670			16477	3301	13881	14283	16477	16477		
QILLGPNTGLSGGMPGALPSLPGK	24	Unmodified	_QILLGPNTGLSGGMPGALPSLPGK_			0	0	0	Q9NS69	Q9NS69	Q9NS69	TOMM22	Mitochondrial import receptor subunit TOM22 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1138.12757	2274.24059	0.33427	0.00038044	-0.25147	-0.00028621	0.082795	9.4232E-05	1138.62875867285	16.661	0.15961	16.661	16.59	16.75	0	69	82	1.27715511956461	0.0534751005302656	1.27715511956461	514.635924234798	0	21.5480542366096						939	19	4	NaN	NaN	NaN	2.8438E-09	1	35411	103.63	99.037	1	225970			16478	3033	13882	14284	16478	16478		
QILLYSATFPLSVQK	15	Unmodified	_QILLYSATFPLSVQK_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.48763	1706.96071	1.4563	0.0012444	0.0083567	7.1407E-06	1.4647	0.0012515	854.487869971896	16.652	0.18622	16.652	16.573	16.759	0	294	64	1.12800004657306	0.0419645157254074	1.12800004657306	455.449359239464	0	16.9438927382998						776	22	4	NaN	NaN	NaN	1.469E-06	1	24691	128.97	115.8	1	229110			16479	847	13883	14285	16479	16479		
QILMASGSTTFTK	13	Unmodified	_QILMASGSTTFTK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.860677	1383.7068	1.1733	0.00081292	-2.7231	-0.0018867	-1.5498	-0.0010738	692.860647793454	9.1947	0.15079	9.1947	9.1592	9.31	0	483	28	1.00151498427745	0.01814921540488	1.00151498427745	405.138811512997	0	7.34182880382093						160	18	2	NaN	NaN	NaN	0.00085579	1	14947	58.889	46.932	1	45991			16480	2064	13884	14286	16480	16480		
QILSADLR	8	Unmodified	_QILSADLR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.266542	914.51853	-0.80667	-0.00036967	0.1213	5.559E-05	-0.68536	-0.00031408	458.266790048444	7.4826	0.20394	7.4826	7.394	7.5979	0	753	73	0.81889964927511	0.0489613528104642	0.81889964927511	332.942053030768	0	19.906338143275						447	24	3	NaN	NaN	NaN	0.068587	1	2596	42.835	7.2016	1	112070			16481	1277	13885	14287	16481	16481		
QILVGDIGDTVEDPYTSFVK	20	Unmodified	_QILVGDIGDTVEDPYTSFVK_			0	0	0	Q9Y281	Q9Y281	Q9Y281	CFL2	Cofilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.55717	2195.09978	-0.044543	-4.8933E-05	0.56265	0.0006181	0.51811	0.00056917	1099.05921754291	16.918	0.1685	16.918	16.839	17.007	0	108	76	1.25141139212444	0.0495411151226253	1.25141139212444	504.372757930043	0	19.9672058465994						913	20	5	NaN	NaN	NaN	7.8161E-16	1	34625	141.87	134.3	1	255530			16482	3335	13886	14288	16482	16482		
QIMENAEINNIIK	13	Unmodified	_QIMENAEINNIIK_			0	0	0	P11388;Q02880	P11388;Q02880	P11388	TOP2A;TOP2B	DNA topoisomerase 2-alpha;DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.40324	1528.79193	1.6188	0.001239	-3.4724	-0.0026578	-1.8536	-0.0014188	765.402313617375	12.192	0.18624	12.192	12.086	12.272	0	402	46	1.05585747106793	0.0301236649306122	1.05585747106793	426.720499669863	0	12.1743565806065						480	22	6	NaN	NaN	NaN	0.0025385	1	19389	71.066	57.268	1	176820			16483	652;1534	13887	14289	16483	16483		
QINIHNLSAFYDSELFR	17	Unmodified	_QINIHNLSAFYDSELFR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.681323	2066.02214	-0.70871	-0.00048878	-1.8323	-0.0012637	-2.541	-0.0017525	690.014428472212	16.466	0.12413	16.466	16.422	16.546	0	663	43	0.880024865079826	0.0284578263810398	0.880024865079826	532.239224506397	0	17.2112994134641						392	15	5	NaN	NaN	NaN	7.613E-11	1	32813	206.7	198.73	1	154520			16484	1144	13888	14290	16484	16484		
QINIHNLSAFYDSELFR	17	Unmodified	_QINIHNLSAFYDSELFR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.01835	2066.02214	0.74132	0.00076654	0.13965	0.0001444	0.88096	0.00091093	1034.5196050701	16.466	0.11528	16.466	16.413	16.528	0	138	40	1.23157729878518	0.0257966977924515	1.23157729878518	496.573749429359	0	10.4012658875162						450	14	7	NaN	NaN	NaN	0.00065319	1	32815	70.806	68.091	1	88598			16485	1144	13888	14290	16485	16485		
QIPLQSLDLEFGSGFQPR	18	Unmodified	_QIPLQSLDLEFGSGFQPR_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.52855	2031.04254	0.79393	0.00080706	-0.82954	-0.00084325	-0.035608	-3.6196E-05	1017.02937415398	18.062	0.12415	18.062	17.982	18.107	0	195	34	1.19381749893585	0.0218849460359061	1.19381749893585	481.404286044665	0	8.82505645203941						201	15	3	NaN	NaN	NaN	0.0017116	1	32174	57.042	49.078	1	36921			16486	2268	13889	14291	16486	16486		
QIQDQLNELEER	12	Unmodified	_QIQDQLNELEER_			0	0	0	Q92541	Q92541	Q92541	RTF1	RNA polymerase-associated protein RTF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.875901	1513.73725	1.6285	0.0012342	1.2082	0.00091567	2.8367	0.0021499	757.876146561728	9.9307	0.12414	9.9307	9.8686	9.9928	0	435	25	1.03374239103424	0.0160936862293779	1.03374239103424	417.820045771315	0	6.50477795561858						199	15	4	NaN	NaN	NaN	0.032416	1	18922	48.785	36.19	1	51604			16487	2409	13890	14292	16487	16487		
QIQEEITGNTEALSGR	16	Unmodified	_QIQEEITGNTEALSGR_			0	0	0	Q9NVD7	Q9NVD7	Q9NVD7	PARVA	Alpha-parvin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.436854	1744.85916	2.2535	0.0019683	-2.2277	-0.0019457	0.025802	2.2536E-05	873.434588977291	8.9553	0.079818	8.9553	8.9198	8.9996	0	357	28	1.08596037261705	0.0180443182324475	1.08596037261705	438.398412562454	0	7.28442829807227						159	10	4	NaN	NaN	NaN	3.2064E-06	1	25749	66.619	51.003	1	37744			16488	3063	13891	14293	16488	16488		
QIQELVEAIVLPMNHK	16	Unmodified	_QIQELVEAIVLPMNHK_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.344995	1861.01315	-0.27386	-0.00017016	-1.3889	-0.00086297	-1.6627	-0.0010331	621.678649997719	17.211	0.15963	17.211	17.122	17.282	0	621	40	0.908462957275599	0.0263720347724746	0.908462957275599	549.842050948393	0	15.9615244307432						495	19	3	NaN	NaN	NaN	5.0138E-05	1	28724	125.17	123.7	1	127550			16489	746	13892	14294	16489	16489		
QIQQELEQCDVPEDVR	16	Unmodified	_QIQQELEQCDVPEDVR_			0	0	0	Q9ULX3	Q9ULX3	Q9ULX3	NOB1	RNA-binding protein NOB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.465286	1984.91602	1.7807	0.0017691	-2.8415	-0.0028229	-1.0607	-0.0010538	993.963241246333	9.4164	0.19506	9.4164	9.3366	9.5317	0	234	67	1.16792504164217	0.0438873183410309	1.16792504164217	471.037511829711	0	17.7002568616652						614	23	4	NaN	NaN	NaN	0.0002489	1	31361	73.502	67.804	1	113100			16490	3282	13893	14295	16490	16490		
QISQAYEVLSDAK	13	Unmodified	_QISQAYEVLSDAK_			0	0	0	P31689	P31689	P31689	DNAJA1	DnaJ homolog subfamily A member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.372463	1450.73037	1.8648	0.0013546	0.30515	0.00022165	2.17	0.0015762	726.371690096332	10.037	0.25713	10.037	9.9218	10.179	0	444	61	1.02770517576159	0.0402675771022469	1.02770517576159	415.543338526564	0	16.2818323952134						586	30	3	NaN	NaN	NaN	0.013064	1	17006	64.266	49.503	1	262350			16491	926	13894	14296	16491	16491		
QISSFVSEISDEFK	14	Unmodified	_QISSFVSEISDEFK_			0	0	0	Q9UBF2	Q9UBF2	Q9UBF2	COPG2	Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.396135	1614.77772	1.1239	0.00090853	2.1118	0.0017072	3.2357	0.0026157	808.397795105198	17.122	0.12414	17.122	17.078	17.202	0	372	40	1.07593298845566	0.0260783915787524	1.07593298845566	434.626071935118	0	10.5344375680197						318	15	4	NaN	NaN	NaN	7.1306E-05	1	22038	110.44	99.084	1	74566			16492	3173	13895	14297	16492	16492		
QISYNYSDLDQSNVTEETPEGEEHHPVADTENK	33	Unmodified	_QISYNYSDLDQSNVTEETPEGEEHHPVADTENK_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	944.667405	3774.64052	2.1939	0.0020725	0.20611	0.00019471	2.4	0.0022672	945.169316133726	9.044	0.12415	9.044	8.9996	9.1238	0	426	40	1.03977710643793	0.0261504383989628	1.03977710643793	835.938864547535	0	21.0238979559166						476	15	6	NaN	NaN	NaN	3.3138E-40	1	38729	167.56	166.71	1	126700			16493	2296	13896	14298	16493	16493		
QITDNIFLTTAEVIAQQVSDK	21	Unmodified	_QITDNIFLTTAEVIAQQVSDK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.744428	2333.21146	0.66333	0.00051656	-0.83455	-0.0006499	-0.17122	-0.00013334	779.078374981385	20.155	0.03547	20.155	20.155	20.19	0	462	31	1.01562323939346	0.0201476911078267	1.01562323939346	613.779749978546	0	12.1760159980112						115	5	4	NaN	NaN	NaN	3.578E-05	1	35927	73.345	71.243	1	74190			16494	1106	13897	14299	16494	16494		
QITSYGETCPGLEQYAIK	18	Unmodified	_QITSYGETCPGLEQYAIK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.49605	2056.97756	2.3269	0.0023955	-0.43625	-0.00044912	1.8906	0.0019464	1029.99747065208	11.527	0.27494	11.527	11.456	11.731	0	210	109	1.18386433251387	0.0717072093907869	1.18386433251387	477.349825746063	0	28.9132994105366						1820	32	6	NaN	NaN	NaN	5.6062E-87	1	32658	323.06	260.61	1	902200			16495	1174	13898	14300	16495	16495		
QITVNDLPVGR	11	Unmodified	_QITVNDLPVGR_			0	0	0	P32119;Q06830	P32119;Q06830	Q06830	PRDX2;PRDX1	Peroxiredoxin-2;Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.340769	1210.66699	1.8488	0.001121	0.2502	0.0001517	2.099	0.0012727	606.341073390122	9.8776	0.39899	9.8776	9.8066	10.206	0	585	97	0.932794566565362	0.064812481184836	0.932794566565362	377.872687876725	0	26.2553699936862						1847	46	5	NaN	NaN	NaN	2.2659E-17	1	9760	213.45	169.71	1	3770200			16496	1564;936	13899	14301	16496	16496		
QIVGTPVNSEDSDTR	15	Unmodified	_QIVGTPVNSEDSDTR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.389373	1616.76419	2.3332	0.0018884	-1.5531	-0.0012571	0.78	0.00063133	809.388911177542	5.4697	0.11524	5.4697	5.4342	5.5494	0	429	40	1.03776581230406	0.0261468289709272	1.03776581230406	419.203969112647	0	10.5619729946459						263	14	5	NaN	NaN	NaN	3.8952E-06	1	22098	71.219	68.504	1	60638			16497	1974	13900	14302	16497	16497		
QIVLTGILEQVVNCR	15	Unmodified	_QIVLTGILEQVVNCR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.325823	1740.95564	-0.89426	-0.00051985	0.68456	0.00039795	-0.2097	-0.0001219	581.326239912095	19.038	0.10639	19.038	19.002	19.109	0	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	547.664122861274	0	11.0635819175726						240	13	4	NaN	NaN	NaN	0.0001377	1	25641	115.41	98.42	1	92158			16498	2605	13901	14303	16498	16498		
QIVLTGILEQVVNCR	15	Unmodified	_QIVLTGILEQVVNCR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.485096	1740.95564	1.0909	0.00095067	-0.27981	-0.00024385	0.81105	0.00070682	871.485290786665	19.038	0.079787	19.038	19.002	19.082	0	306	43	1.12000185836644	0.0280013716258987	1.12000185836644	452.148825609822	0	11.3042556148794						258	10	4	NaN	NaN	NaN	3.0268E-08	1	25642	128.97	115.2	1	63281			16499	2605	13901	14303	16499	16499		
QIVLTGILEQVVNCR	15	Unmodified	_QIVLTGILEQVVNCR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.485096	1740.95564	0.90909	0.00079226	0.6526	0.00056873	1.5617	0.001361	871.485413197539	19.046	0.079791	19.046	19.011	19.091	0	216	37	1.17988115188462	0.023905654272754	1.17988115188462	476.322310775263	0	9.6507995450259						222	10	4	NaN	NaN	NaN	2.6408E-08	1	25643	133.07	119.86	1	62859			16500	2605	13901	14303	16500	16500		
QIVYCIGGENLSVAK	15	Unmodified	_QIVYCIGGENLSVAK_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.929622	1649.84469	2.2106	0.0018258	-1.5287	-0.0012626	0.68185	0.00056316	826.429484497864	11.616	0.23951	11.616	11.518	11.758	0	345	58	1.09397730668811	0.0380568517992328	1.09397730668811	441.835241267999	0	15.3703904037274						646	28	4	NaN	NaN	NaN	2.9994E-05	1	23048	86.838	78.464	1	170460			16501	1881	13902	14304	16501	16501		
QIWLGLFDDR	10	Unmodified	_QIWLGLFDDR_			0	0	0	P52594	P52594	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.830037	1261.64552	0.12545	7.9264E-05	1.3988	0.00088378	1.5242	0.00096305	631.83115662988	17.415	0.12415	17.415	17.38	17.504	0	549	40	0.957085760909907	0.0262917911447993	0.957085760909907	387.536364748676	0	10.6458852269416						197	15	2	NaN	NaN	NaN	2.6464E-05	1	11273	117.3	101.42	1	71005			16502	1216	13903	14305	16502	16502		
QIWQNLGLDDTK	12	Unmodified	_QIWQNLGLDDTK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.867348	1429.72014	2.3472	0.0016803	-1.153	-0.0008254	1.1942	0.00085488	715.867602955901	12.76	0.28379	12.76	12.68	12.963	0	438	79	1.03173026378327	0.0523478674550422	1.03173026378327	417.228755816645	0	21.1693272695449						1297	33	5	NaN	NaN	NaN	0.0014712	1	16384	75.474	50.785	1	590780			16503	1136	13904	14306	16503	16503		
QIWTLEQPPDEAGSAAVCLR	20	Unmodified	_QIWTLEQPPDEAGSAAVCLR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.05206	2240.08957	1.9714	0.0022101	-1.1838	-0.0013271	0.7876	0.00088294	1121.55263416092	14.391	0.10638	14.391	14.32	14.427	0	159	79	1.21767724410157	0.0516111149067147	1.21767724410157	490.71445274632	0	20.7988776416382						791	13	4	NaN	NaN	NaN	3.3002E-11	1	35099	137.58	129.58	1	204930			16504	1898	13905	14307	16504	16504		
QIYNPPSGK	9	Unmodified	_QIYNPPSGK_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.263999	1002.51345	1.1193	0.00056216	-4.9821	-0.0025023	-3.8629	-0.0019402	502.261922242976	3.847	0.097522	3.847	3.8292	3.9268	0	720	25	0.841341816837976	0.0163023058577868	0.841341816837976	341.621812131612	0	6.61945377919255						95	12	2	NaN	NaN	NaN	0.048758	1	4352	29.31	9.8223	1	19415			16505	2816	13906	14308	16505	16505		
QKPSNTEDFIEDIVK	15	Unmodified	_QKPSNTEDFIEDIVK_			0	0	1	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.300108	1761.87849	-0.56977	-0.00033519	-0.45193	-0.00026587	-1.0217	-0.00060106	588.299532830646	13.017	0.070924	13.017	12.981	13.052	0	702	52	0.853568545818287	0.0346303797525405	0.853568545818287	516.832293363552	0	20.9685545176666						248	9	3	NaN	NaN	NaN	0.033053	1	26196	55.578	53.736	1	47750			16506	1076	13907	14309	16506	16506		
QLADETLLK	9	Unmodified	_QLADETLLK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.792589	1029.57063	0.63169	0.00032582	2.0945	0.0010803	2.7261	0.0014061	515.794016283973	8.3963	0.20401	8.3963	8.3164	8.5205	0	666	52	0.877991458330206	0.0345583335678743	0.877991458330206	356.376279519976	0	14.0272097484318						366	24	3	NaN	NaN	NaN	0.013139	1	4989	49.96	23.504	1	103180			16507	784	13908	14310	16507	16507		
QLAEDFLR	8	Unmodified	_QLAEDFLR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.263999	990.513445	0.61295	0.00030418	0.20099	9.9742E-05	0.81393	0.00040393	496.263818245246	10.365	0.12412	10.365	10.321	10.445	0	645	40	0.892219381832517	0.0264122944165538	0.892219381832517	362.33972982814	0	10.7263121805079						290	15	3	NaN	NaN	NaN	0.0012387	1	4065	97.033	61.4	1	101010			16508	2435	13909	14311	16508	16508		
QLAEEDLAQQR	11	Unmodified	_QLAEEDLAQQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.828223	1299.64189	2.3038	0.0014994	-2.3748	-0.0015456	-0.070992	-4.6204E-05	650.826663444885	5.6203	0.23059	5.6203	5.5051	5.7357	0	537	52	0.965173861991602	0.034362550528363	0.965173861991602	390.687629785091	0	13.9094353338522						505	27	4	NaN	NaN	NaN	1.1901E-05	1	12340	127.94	117.86	1	147130			16509	1816	13910	14312	16509	16509		
QLAEFVPLDYSVPIEIPTIK	20	Unmodified	_QLAEFVPLDYSVPIEIPTIK_			0	0	0	Q9NP92	Q9NP92	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1136.62739	2271.24024	0.0089419	1.0164E-05	-0.80203	-0.00091161	-0.79309	-0.00090145	1137.12806766773	19.915	0.026595	19.915	19.907	19.933	0	69	43	1.27715511956461	0.0277069358040583	1.27715511956461	514.640054771923	0	11.1647353883087						110	4	4	NaN	NaN	NaN	0.0010217	1	35376	56.08	49.558	1	25541			16510	2981	13911	14313	16510	16510		
QLAEQEELER	10	Unmodified	_QLAEQEELER_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.809499	1243.60444	1.5101	0.00094053	7.0567	0.004395	8.5668	0.0053355	623.316623575589	5.2479	0.17738	5.2479	5.1415	5.3189	0	579	49	0.936845902828289	0.032415189981154	0.936845902828289	379.400535454828	0	13.1273888251971						412	21	4	NaN	NaN	NaN	0.0081437	1	10730	65.933	8.9002	1	132680			16511	3209	13912	14314	16511	16511		
QLALETIDINK	11	Unmodified	_QLALETIDINK_			0	0	0	Q15428	Q15428	Q15428	SF3A2	Splicing factor 3A subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.356085	1256.69762	0.67991	0.00042791	-1.2157	-0.00076512	-0.5358	-0.00033721	629.355317539916	11.722	0.3104	11.722	11.598	11.908	1.7764E-15	555	49	0.953040030838688	0.0323703311033066	0.953040030838688	385.914656515189	0	13.1077235003678						528	35	4	NaN	NaN	NaN	4.3581E-05	1	11120	120.33	81.008	1	216790			16512	1848	13913	14315	16512	16512		
QLAPIWDK	8	Unmodified	_QLAPIWDK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.77146	969.528367	0.19623	9.5325E-05	-1.9099	-0.00092776	-1.7136	-0.00083244	485.770880002833	9.7268	0.266	9.7268	9.6026	9.8686	0	717	91	0.84338031290707	0.0611932079668018	0.84338031290707	342.607198686974	0	24.8585759464906						915	31	3	NaN	NaN	NaN	0.024664	1	3624	45.489	25.256	1	315010			16513	554	13914	14316	16513	16513		
QLASEDISHITPTQGFNIK	19	Unmodified	_QLASEDISHITPTQGFNIK_			0	0	0	P36405	P36405	P36405	ARL3	ADP-ribosylation factor-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.04202	2098.06948	0.073863	7.756E-05	0.31067	0.00032622	0.38454	0.00040378	1050.54298800851	11.979	0.053193	11.979	11.944	11.997	0	66	31	1.27913350869533	0.0197825394975926	1.27913350869533	515.695885895943	0	7.97553512759436						108	7	3	NaN	NaN	NaN	0.0025602	1	33285	67.838	63.532	1	15600			16514	983	13915	14317	16514	16514		
QLASGLLLVTGPLVLNR	17	Unmodified	_QLASGLLLVTGPLVLNR_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.696245	1763.0669	0.42278	0.00024889	-0.82131	-0.0004835	-0.39853	-0.00023461	588.695801915231	18.896	0.1241	18.896	18.834	18.958	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	586.853416210805	0	9.78915397101537						290	15	4	NaN	NaN	NaN	0.00046518	1	26228	77.157	65.139	1	89696			16515	1533	13916	14318	16515	16515		
QLASGLLLVTGPLVLNR	17	Unmodified	_QLASGLLLVTGPLVLNR_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.540729	1763.0669	1.8875	0.0016658	-0.36075	-0.00031838	1.5268	0.0013474	883.042074962108	18.905	0.16849	18.905	18.816	18.984	0	276	61	1.13998907770044	0.0399469649708541	1.13998907770044	460.172140095323	0	16.1251372671321						929	20	5	NaN	NaN	NaN	2.1394E-34	1	26229	258	241.72	1	487220			16516	1533	13916	14318	16516	16516		
QLAVAEGKPPEAPK	14	Unmodified	_QLAVAEGKPPEAPK_			0	0	1	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.936553	1433.78783	1.6649	0.0007974	0.71413	0.00034202	2.3791	0.0011394	478.937003075993	5.0883	0.20385	5.0883	4.9465	5.1504	0	624	25	0.906433495720521	0.0162390708699242	0.906433495720521	549.820008907818	0	9.85021640584796						308	24	3	NaN	NaN	NaN	0.053551	1	16504	42.061	34.503	1	81827			16517	1284	13917	14319	16517	16517		
QLCAEHGISPEGIVEEFATEGTDRK	25	Unmodified	_QLCAEHGISPEGIVEEFATEGTDRK_			0	0	1	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	694.082895	2772.30247	0.43004	0.00029848	1.7186	0.0011929	2.1487	0.0014914	694.334930135681	15.331	0.16848	15.331	15.216	15.384	0	489	34	0.997481546940468	0.0221854416206791	0.997481546940468	802.99952540154	0	17.8598783575213						274	20	4	NaN	NaN	NaN	0.025177	1	37819	9.5402	9.4931	1	57390			16518	815	13918	14320	16518	16518		
QLCDNAGFDATNILNK	16	Unmodified	_QLCDNAGFDATNILNK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.427975	1792.8414	2.1125	0.0018958	3.2453	0.0029124	5.3578	0.0048083	897.431266004104	12.502	0.28373	12.502	12.396	12.68	0	303	52	1.12200181823275	0.0339946501081771	1.12200181823275	452.852631585734	0	13.7206255027038						815	33	5	NaN	NaN	NaN	1.2357E-24	1	27042	205.26	167.16	1	369400			16519	2679	13919	14321	16519	16519		
QLDDEEVSEFALDGLK	16	Unmodified	_QLDDEEVSEFALDGLK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.433446	1806.85234	1.9683	0.0017802	2.3551	0.00213	4.3234	0.0039102	904.435807802034	15.446	0.21294	15.446	15.367	15.579	0	288	52	1.13199748998575	0.0339806182631683	1.13199748998575	456.859807663919	0	13.7141458893231						525	25	5	NaN	NaN	NaN	2.4538E-06	1	27394	75.012	72.711	1	179320			16520	2420	13920	14322	16520	16520		
QLDDKDEEINQQSQLVEK	18	Unmodified	_QLDDKDEEINQQSQLVEK_			0	0	1	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.3536	2158.03897	0.69536	0.00050091	2.3823	0.0017161	3.0777	0.002217	720.689779553676	6.5515	0.053193	6.5515	6.5249	6.5781	0	630	28	0.902373728295776	0.0182702218155131	0.902373728295776	545.60057303195	0	11.0466907218042						146	7	4	NaN	NaN	NaN	0.013158	1	34146	30.027	28.403	1	31273			16521	944	13921	14323	16521	16521		
QLDSTIGIHPVCAEVFTTLSVTK	23	Unmodified	_QLDSTIGIHPVCAEVFTTLSVTK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	839.440351	2515.29923	1.0174	0.00085403	-1.1883	-0.00099752	-0.17094	-0.00014349	839.77329717842	15.961	0.15074	15.961	15.925	16.076	0	468	55	1.01159370163332	0.0362909172147328	1.01159370163332	611.082614071654	0	21.9225846531371						628	18	6	NaN	NaN	NaN	2.1445E-06	1	36902	77.478	72.644	1	164170			16522	1914	13922	14324	16522	16522		
QLDSTIGIHPVCAEVFTTLSVTK	23	Unmodified	_QLDSTIGIHPVCAEVFTTLSVTK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	839.440351	2515.29923	1.4682	0.0012325	-0.35234	-0.00029577	1.1159	0.0009367	839.774995818142	15.961	0.079793	15.961	15.925	16.005	0	360	79	1.08395544855938	0.0521244755245256	1.08395544855938	654.794830105622	0	31.4873061810682						417	10	3	NaN	NaN	NaN	0.023553	1	36903	41.188	39.24	1	85645			16523	1914	13922	14324	16523	16523		
QLEAEADAIIQMVR	14	Unmodified	_QLEAEADAIIQMVR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.61174	1585.81339	-2.4177	-0.0012805	0.0011687	6.1896E-07	-2.4165	-0.0012798	529.612002512238	17.025	0.053191	17.025	17.016	17.069	0	714	13	0.845418525735192	0.00815228506664301	0.845418525735192	512.340448952327	0	4.9404469666656						38	7	2	NaN	NaN	NaN	0.071431	1	21136	4.2462	3.8851	1	6957.1			16524	2149	13923	14325	16524	16524		
QLEAIDQLHLEYAK	14	Unmodified	_QLEAIDQLHLEYAK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.629788	1669.86754	-0.18167	-0.0001013	1.3261	0.00073945	1.1444	0.00063815	558.299550069039	11.89	0.21284	11.89	11.766	11.979	0	618	40	0.910492137470517	0.0263830055416011	0.910492137470517	551.536122711747	0	15.9816652808476						443	25	4	NaN	NaN	NaN	0.00015297	1	23622	66.953	58.147	1	159760			16525	221	13924	14326	16525	16525		
QLEAIDQLHLEYAK	14	Unmodified	_QLEAIDQLHLEYAK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.941044	1669.86754	1.6941	0.0014162	-0.26555	-0.00022198	1.4285	0.0011942	835.9413260557	11.89	0.17737	11.89	11.837	12.015	0	279	43	1.13799159301878	0.0279667154484231	1.13799159301878	459.565815919266	0	11.2940609425261						669	21	5	NaN	NaN	NaN	9.9331E-08	1	23623	138	86.127	1	181570			16526	221	13924	14326	16526	16526		
QLEDCLILQTLLHSK	15	Unmodified	_QLEDCLILQTLLHSK_			0	0	0	Q9H2M9	Q9H2M9	Q9H2M9	RAB3GAP2	Rab3 GTPase-activating protein non-catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.329233	1809.96587	-1.1329	-0.00068466	-0.40752	-0.00024628	-1.5404	-0.00093094	604.32853403933	17.131	0.088631	17.131	17.087	17.176	0	645	19	0.892219381832517	0.0121894422500569	0.892219381832517	540.123263373177	0	7.37912834092128						123	11	3	NaN	NaN	NaN	0.040105	1	27482	34.472	26.897	1	25780			16527	2870	13925	14327	16527	16527		
QLEDGRTLSDYNIQK	15	Unmodified	_QLEDGRTLSDYNIQK_			0	0	1	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.447222	1778.87989	2.9978	0.0026693	-2.1262	-0.0018932	0.87159	0.00077611	890.445633105106	7.1545	0.21287	7.1545	7.1102	7.3231	0	264	124	1.14797626962532	0.0818407366127798	1.14797626962532	463.364143157327	0	33.033838589993						1243	25	5	NaN	NaN	NaN	2.0775E-16	1	26648	149.58	71.542	1	564740			16528	1419	13926	14328	16528	16528		
QLEDGRTLSDYNIQK	15	Unmodified	_QLEDGRTLSDYNIQK_			0	0	1	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.96724	1778.87989	0.38526	0.00022883	1.1335	0.00067324	1.5187	0.00090208	593.967887589841	7.1545	0.29261	7.1545	7.1102	7.4028	0	711	76	0.847456455381371	0.0509412014285627	0.847456455381371	513.093191896935	0	30.8423913394861						1028	34	6	NaN	NaN	NaN	4.0513E-08	1	26649	150.44	97.417	1	879550			16529	1419	13926	14328	16529	16529		
QLEEEQQALQK	11	Unmodified	_QLEEEQQALQK_			0	0	0	CON__Q3SX28;P07951	CON__Q3SX28	CON__Q3SX28	TPM2	Tropomyosin beta chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.343706	1342.67286	2.2276	0.0014977	-1.47	-0.00098832	0.7576	0.00050937	672.343109410243	4.6361	0.1862	4.6361	4.5741	4.7603	0	531	43	0.969216233931596	0.028284867590345	0.969216233931596	392.191643681066	0	11.4454219019423						469	22	5	NaN	NaN	NaN	2.4088E-11	1	13687	146.27	92.397	1	227590		+	16530	41	13927	14329	16530	16530		
QLENSLNEFGEK	12	Unmodified	_QLENSLNEFGEK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.341163	1406.66777	1.9171	0.0013503	-7.0687	-0.0049788	-5.1516	-0.0036285	704.336249862284	8.5027	0.24829	8.5027	8.3785	8.6268	0	468	46	1.01159370163332	0.030219453730939	1.01159370163332	409.149841962809	0	12.222579775114						488	29	2	NaN	NaN	NaN	0.00071778	1	15666	85.821	26.931	1	277060			16531	857	13928	14330	16531	16531		
QLEPVYNSLAK	11	Unmodified	_QLEPVYNSLAK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.342978	1260.6714	1.629	0.0010285	-0.57817	-0.00036502	1.0508	0.00066344	631.342511355669	8.4761	0.16849	8.4761	8.3874	8.5559	0	522	58	0.975277694896658	0.0383945804732124	0.975277694896658	394.905825449614	0	15.5465910621202						539	20	4	NaN	NaN	NaN	0.0028478	1	11242	74.424	52.038	1	203310			16532	680	13929	14331	16532	16532		
QLETLGQEK	9	Unmodified	_QLETLGQEK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.279846	1044.54514	1.7362	0.00090853	1.2063	0.00063122	2.9425	0.0015398	523.280998506574	4.2371	0.41675	4.2371	4.1839	4.6007	0	681	58	0.867820189810857	0.0386508360142306	0.867820189810857	352.181140680915	0	15.6853869909727						793	48	4	NaN	NaN	NaN	8.6595E-05	1	5342	118.06	84.663	1	588660		+	16533	28	13930	14332	16533	16533		
QLETVLDDLDPENALLPAGFR	21	Unmodified	_QLETVLDDLDPENALLPAGFR_			0	0	0	Q9NYL9	Q9NYL9	Q9NYL9	TMOD3	Tropomodulin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1163.5999	2325.18524	0.10843	0.00012617	0.1452	0.00016896	0.25363	0.00029513	1164.10171309132	19.924	0.035482	19.924	19.907	19.942	0	72	43	1.27517645957152	0.0277069358040583	1.27517645957152	513.77023316034	0	11.1631600170793						162	5	5	NaN	NaN	NaN	0.0013628	1	35860	40.53	38.559	1	33734			16534	3119	13931	14333	16534	16534		
QLEVYTSGGDPESVAGEYGR	20	Unmodified	_QLEVYTSGGDPESVAGEYGR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.48727	2112.95999	2.247	0.0023761	-0.26817	-0.00028359	1.9788	0.0020925	1057.98850185769	10.56	0.079817	10.56	10.516	10.596	0	198	46	1.1918274123006	0.0298554064334218	1.1918274123006	480.475266798368	0	12.0359577430613						272	10	3	NaN	NaN	NaN	7.1561E-17	1	33500	116.06	105.57	1	46553			16535	3329	13932	14334	16535	16535		
QLFDVVIVQADK	12	Unmodified	_QLFDVVIVQADK_			0	0	0	Q9H857	Q9H857	Q9H857	NT5DC2	5-nucleotidase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.88501	1373.75547	0.87986	0.00060525	-7.2547	-0.0049904	-6.3748	-0.0043851	688.379194699265	14.693	0.1685	14.693	14.613	14.781	0	453	58	1.02166545906632	0.0382779809350662	1.02166545906632	413.319837589152	0	15.485547370644						836	20	6	NaN	NaN	NaN	0.066423	1	14636	35.33	14.241	1	189290			16536	2923	13933	14335	16536	16536		
QLFEEQAK	8	Unmodified	_QLFEEQAK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.756007	991.497461	1.3672	0.00067915	-0.82648	-0.00041056	0.54069	0.00026859	496.755700818126	5.0085	0.23939	5.0085	4.9731	5.2125	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	355.730886217738	0	8.25948814617885						311	28	3	NaN	NaN	NaN	0.05405	1	4087	51.43	18.034	1	112330			16537	1801	13934	14336	16537	16537		
QLFHPEQLITGK	12	Unmodified	_QLFHPEQLITGK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.92951	1409.7667	0.21787	0.0001026	-0.76358	-0.00035959	-0.54571	-0.00025699	470.929253546737	11.004	0.43451	11.004	10.844	11.279	0	735	121	0.831145085810763	0.081579672612162	0.831145085810763	504.23389793529	0	49.4922451155309						2092	50	6	NaN	NaN	NaN	0.0039468	1	15755	71.066	0	1	3607300			16538	1447;2696;1448	13935	14337	16538	16538		
QLFHPEQLITGK	12	Unmodified	_QLFHPEQLITGK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.890626	1409.7667	2.6752	0.0018884	1.2107	0.0008546	3.8858	0.002743	705.891829529556	10.995	0.37244	10.995	10.862	11.234	0	426	58	1.03977710643793	0.0382251566582583	1.03977710643793	420.53988627419	0	15.4602394439589						1492	43	5	NaN	NaN	NaN	2.0196E-07	1	15756	148.76	0	1	1841500			16539	1447;2696;1448	13935	14337	16539	16539		
QLFNSLATQEGEWK	14	Unmodified	_QLFNSLATQEGEWK_			0	0	0	P78316	P78316	P78316	NOP14	Nucleolar protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.909744	1649.80494	2.2759	0.0018797	-0.39637	-0.00032737	1.8795	0.0015523	826.409805915141	12.76	0.12415	12.76	12.689	12.813	-1.7764E-15	375	49	1.07392668217569	0.0321164047126832	1.07392668217569	433.737283730302	0	12.9711668165662						268	15	2	NaN	NaN	NaN	1.0622E-05	1	23029	115.04	101.26	1	89772			16540	1455	13936	14338	16540	16540		
QLFSSLFSGILK	12	Unmodified	_QLFSSLFSGILK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.384645	1338.75474	0.73994	0.00049604	-0.43261	-0.00029001	0.30733	0.00020603	670.384199322381	19.446	0.15072	19.446	19.41	19.561	0	489	49	0.997481546940468	0.03226750840465	0.997481546940468	403.641183967373	0	13.0573796939699						477	18	4	NaN	NaN	NaN	0.00039743	1	13566	70.389	54.807	1	233230			16541	1465	13937	14339	16541	16541		
QLGDNEAITQEIVGCAHLENYALK	24	Unmodified	_QLGDNEAITQEIVGCAHLENYALK_			0	0	0	Q9NP79	Q9NP79	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.109553	2685.30683	1.3212	0.001184	1.7174	0.001539	3.0386	0.0027229	896.445426009058	15.42	0.07991	15.42	15.384	15.464	0	462	73	1.01562323939346	0.0483478066560342	1.01562323939346	613.303308181221	0	29.1957377650793						441	10	5	NaN	NaN	NaN	0.016232	1	37562	14.852	11.411	1	80023			16542	2979	13938	14340	16542	16542		
QLHDDYFYHDEL	12	Unmodified	_QLHDDYFYHDEL_			0	0	0	Q14257	Q14257	Q14257	RCN2	Reticulocalbin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.231805	1593.67359	-1.0942	-0.00058236	0.50791	0.00027033	-0.58627	-0.00031203	532.231925094407	10.268	0.13301	10.268	10.223	10.356	0	750	31	0.820941264895493	0.0204175783261862	0.820941264895493	497.485522558636	0	12.3729309968085						301	16	4	NaN	NaN	NaN	0.017259	1	21376	57.032	49.475	1	96562			16543	1744	13939	14341	16543	16543		
QLICDPSYVK	10	Unmodified	_QLICDPSYVK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.810456	1221.60636	1.9911	0.0012182	-0.42064	-0.00025735	1.5705	0.00096084	611.809953959674	7.8197	0.27499	7.8197	7.6777	7.9527	0	546	67	0.959108205975751	0.0444907380915777	0.959108205975751	388.493062487858	0	18.021264947846						1197	32	5	NaN	NaN	NaN	3.9675E-07	1	10066	114.39	71.559	1	532500			16544	1161	13940	14342	16544	16544		
QLIDEGIAPEEGGVDAK	17	Unmodified	_QLIDEGIAPEEGGVDAK_			0	0	0	Q86WB0	Q86WB0	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.936156	1739.85776	2.6048	0.0022686	-0.66221	-0.00057675	1.9426	0.0016919	870.935163598801	9.8952	0.11525	9.8952	9.842	9.9573	0	330	49	1.10399226369747	0.0320324262624319	1.10399226369747	445.687917047848	0	12.9316715418617						272	14	3	NaN	NaN	NaN	0.00013248	1	25591	83.474	76.727	1	62545			16545	2179	13941	14343	16545	16545		
QLILVLCSEENMQK	14	Unmodified	_QLILVLCSEENMQK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.93659	1703.85863	2.0662	0.0017623	-2.9808	-0.0025425	-0.91467	-0.00078016	852.932725394822	13.629	0.14189	13.629	13.549	13.691	0	336	61	1.09998710857178	0.0400295138193232	1.09998710857178	444.145178635071	0	16.1628399345901						378	17	3	NaN	NaN	NaN	0.00060918	1	24603	61.577	59.098	1	76840			16546	1055	13942	14344	16546	16546		
QLIPIFTDVALK	12	Unmodified	_QLIPIFTDVALK_			0	0	0	Q9UKN8	Q9UKN8	Q9UKN8	GTF3C4	General transcription factor 3C polypeptide 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.408121	1356.80169	0.95842	0.00065116	-4.7484	-0.0032261	-3.79	-0.002575	679.407048950162	17.796	0.133	17.796	17.734	17.867	0	486	37	0.999498404980629	0.0241972834927519	0.999498404980629	404.402371309946	0	9.7903496143324						297	16	3	NaN	NaN	NaN	0.00856	1	14114	56.202	41.747	1	97740			16547	3267	13943	14345	16547	16547		
QLIVGVNK	8	Unmodified	_QLIVGVNK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.774003	869.533452	-1.427	-0.00062187	1.0637	0.00046355	-0.36331	-0.00015832	435.774564471662	6.055	0.34585	6.055	5.9929	6.3387	0	792	46	0.792332785124922	0.0306796823785485	0.792332785124922	322.387165577152	0	12.4830576602584						808	40	4	NaN	NaN	NaN	0.00045536	1	1860	122.54	42.709	1	1097300			16548	1446	13944	14346	16548	16548		
QLLCGAAIGTHEDDK	15	Unmodified	_QLLCGAAIGTHEDDK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.390861	1626.76717	2.766	0.0022526	-0.84709	-0.00068987	1.9189	0.0015628	814.390211145903	6.5072	0.21282	6.5072	6.454	6.6668	0	252	49	1.15595906938629	0.031926818196472	1.15595906938629	466.923566378488	0	12.8961173541628						696	25	5	NaN	NaN	NaN	8.5795E-25	1	22376	225.89	198.3	1	345810			16549	666	13945	14347	16549	16549		
QLLCGAAIGTHEDDK	15	Unmodified	_QLLCGAAIGTHEDDK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.263	1626.76717	0.70768	0.00038446	1.4556	0.00079075	2.1632	0.0011752	543.263269046352	6.4983	0.23053	6.4983	6.4008	6.6313	0	657	28	0.884090832094921	0.0182955837794518	0.884090832094921	535.659986153215	0	11.0850738387862						337	27	4	NaN	NaN	NaN	0.002091	1	22377	83.214	73.952	1	104640			16550	666	13945	14347	16550	16550		
QLLDDEEQLTAK	12	Unmodified	_QLLDDEEQLTAK_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.856646	1401.69874	1.8822	0.001321	1.4345	0.0010068	3.3167	0.0023278	701.857597177898	8.8665	0.17751	8.8665	8.8133	8.9908	0	432	43	1.035754240522	0.0281678436132822	1.035754240522	418.936251773924	0	11.393176452703						485	21	4	NaN	NaN	NaN	3.3291E-11	1	15500	156.57	116.07	1	147000			16551	2726	13946	14348	16551	16551		
QLLDHMDSWTAK	12	Unmodified	_QLLDHMDSWTAK_			0	0	0	Q96SK2	Q96SK2	Q96SK2	TMEM209	Transmembrane protein 209	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.234493	1443.68165	-1.8864	-0.00090967	0.80138	0.00038645	-1.085	-0.00052322	482.235137111194	10.099	0.053189	10.099	10.073	10.126	0	798	13	0.788241307691771	0.00818409423019217	0.788241307691771	478.096300076293	0	4.96394331627778						57	7	2	NaN	NaN	NaN	0.037643	1	16769	22.004	14.002	1	11350			16552	2623	13947	14349	16552	16552		
QLLDLDPEVECLK	13	Unmodified	_QLLDLDPEVECLK_			0	0	0	Q9H4A6	Q9H4A6	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.402906	1570.79126	1.3991	0.0011002	1.2543	0.00098637	2.6534	0.0020866	786.403918460379	14.95	0.22169	14.95	14.826	15.047	0	372	52	1.07593298845566	0.0341213287703452	1.07593298845566	434.729572322968	0	13.7866863666991						513	26	4	NaN	NaN	NaN	1.2599E-05	1	20686	94.66	66.013	1	124400			16553	2894	13948	14350	16553	16553		
QLLEEELAR	9	Unmodified	_QLLEEELAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.800946	1099.58734	0.57199	0.00031505	1.341	0.00073864	1.913	0.0010537	550.801721501093	9.0085	0.15077	9.0085	8.9553	9.106	0	621	46	0.908462957275599	0.0304292729379168	0.908462957275599	368.434707742047	0	12.3408447112756						357	18	4	NaN	NaN	NaN	0.026966	1	6709	46.447	24.06	1	101890			16554	1816	13949	14351	16554	16554		
QLLGEHLTAILQK	13	Unmodified	_QLLGEHLTAILQK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.624198	1462.85076	-0.26678	-0.00013036	0.074663	3.6482E-05	-0.19212	-9.3874E-05	488.623866019045	12.334	0.088658	12.334	12.307	12.396	0	681	37	0.867820189810857	0.0244161317005186	0.867820189810857	526.29833702482	0	14.8074101771734						210	11	3	NaN	NaN	NaN	0.037334	1	17366	39.039	27.081	1	56573			16555	1696	13950	14352	16555	16555		
QLLGEHLTAILQK	13	Unmodified	_QLLGEHLTAILQK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.432658	1462.85076	1.1936	0.0008742	-0.85534	-0.00062648	0.33823	0.00024773	732.4317003877	12.343	0.088658	12.343	12.307	12.396	0	399	46	1.0578662689527	0.0301361332726353	1.0578662689527	427.70523126985	0	12.1843206738336						293	11	3	NaN	NaN	NaN	0.0016707	1	17367	81.799	69.841	1	80180			16556	1696	13950	14352	16556	16556		
QLLHLAEEK	9	Unmodified	_QLLHLAEEK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.806031	1079.59751	1.423	0.00076955	1.5495	0.00083796	2.9724	0.0016075	540.807036799033	5.8066	0.15959	5.8066	5.7623	5.9219	0	609	28	0.916577990479294	0.0182524998058907	0.916577990479294	371.811001577762	0	7.40414924274734						261	19	3	NaN	NaN	NaN	3.9638E-06	1	6204	154.35	110.62	1	68535			16557	1498	13951	14353	16557	16557		
QLLHNFPPDQLTSSGAPFWSGPK	23	Unmodified	_QLLHNFPPDQLTSSGAPFWSGPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.092163	2523.25466	1.0205	0.00085936	-0.48127	-0.00040527	0.53923	0.00045409	842.425865836531	15.322	0.68289	15.322	14.781	15.464	0	543	52	0.961130371139249	0.0343530427274077	0.961130371139249	580.588711138334	0	20.751595620836						553	78	2	NaN	NaN	NaN	1.1464E-09	1	36941	130.81	126.21	1	201980			16558	804	13952	14354	16558	16558		
QLLHNFPPDQLTSSGAPFWSGPK	23	Unmodified	_QLLHNFPPDQLTSSGAPFWSGPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.092163	2523.25466	0.43373	0.00036524	0.27882	0.00023479	0.71255	0.00060004	842.426208371561	16.245	0.16849	16.245	16.129	16.298	0	534	34	0.967195187796614	0.0222376640579702	0.967195187796614	584.252274221543	0	13.4330753121735						198	20	2	NaN	NaN	NaN	1.3175E-06	1	36942	54.813	50.654	1	56268			16559	804	13952	14354	16559	16559		
QLLHSCTVIATNILLVDEIMR	21	Unmodified	_QLLHSCTVIATNILLVDEIMR_			0	0	0	P40227;Q92526	P40227;Q92526	P40227	CCT6A;CCT6B	T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.774789	2438.30254	-0.16509	-0.00013435	0.44414	0.00036143	0.27905	0.00022708	814.109987947158	19.117	0.053208	19.117	19.091	19.144	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	585.584831096363	0	12.2099918038629						57	7	2	NaN	NaN	NaN	0.025427	1	36522	8.074	6.6481	1	13218			16560	1016;2407	13953	14355	16560	16560		
QLLLESQSQLDAAK	14	Unmodified	_QLLLESQSQLDAAK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.419945	1542.82534	1.9623	0.0015157	-0.0062309	-4.8128E-06	1.956	0.0015109	772.419791577653	9.9218	0.13292	9.9218	9.8776	10.01	0	381	37	1.06991323971056	0.0240806587960416	1.06991323971056	432.365772008685	0	9.73130553431116						323	16	4	NaN	NaN	NaN	1.181E-07	1	19831	97.175	33.777	1	87810			16561	3158	13954	14356	16561	16561		
QLLLTADDR	9	Unmodified	_QLLLTADDR_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.787838	1043.56112	1.5666	0.00081897	0.72848	0.00038084	2.295	0.0011998	522.788275568536	7.8374	0.32826	7.8374	7.7664	8.0947	-8.8818E-16	642	49	0.894250814548268	0.0325051879347241	0.894250814548268	362.911742517878	0	13.1915053387129						841	38	3	NaN	NaN	NaN	1.8314E-08	1	5322	163.2	85.024	1	738290			16562	504	13955	14357	16562	16562		
QLLLTADDRVNPCIGGVILFHETLYQK	27	Unmodified	_QLLLTADDRVNPCIGGVILFHETLYQK_			0	0	1	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	779.166762	3112.63794	0.55725	0.00043419	0.60724	0.00047315	1.1645	0.00090734	779.417732044921	16.972	0.27489	16.972	16.874	17.149	0	408	40	1.0518390438467	0.026117980429907	1.0518390438467	846.296825522145	0	21.0142075027414						764	32	6	NaN	NaN	NaN	0.010695	1	38373	39.557	38.916	1	279300			16563	504	13956	14358	16563	16563		
QLLMLQSLE	9	Unmodified	_QLLMLQSLE_			0	0	0	P53680	P53680	P53680	AP2S1	AP-2 complex subunit sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.796817	1073.57908	-0.8689	-0.00046729	0.58145	0.0003127	-0.28745	-0.00015459	537.797082426359	17.619	0.079795	17.619	17.592	17.672	0	678	19	0.869855008346864	0.0122063695890653	0.869855008346864	352.8826918256	0	4.95187878057243						76	10	2	NaN	NaN	NaN	0.0036875	1	6048	67.903	32.971	1	13674			16564	1243	13957	14359	16564	16564		
QLLPCEMACNEK	12	Unmodified	_QLLPCEMACNEK_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.833279	1491.65201	1.8046	0.0013477	0.2968	0.00022166	2.1014	0.0015694	746.834212048615	8.2188	0.15081	8.2188	8.1567	8.3076	0	438	43	1.03173026378327	0.0281756225975058	1.03173026378327	417.062722940839	0	11.3896066574409						429	18	4	NaN	NaN	NaN	0.012893	1	18274	38.1	32.234	1	122390			16565	3013	13958	14360	16565	16565		
QLLQANPILEAFGNAK	16	Unmodified	_QLLQANPILEAFGNAK_			0	0	0	P35579;P35749;Q7Z406	P35579	P35579	MYH9;MYH11;MYH14	Myosin-9;Myosin-11;Myosin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.977961	1725.94137	2.1787	0.0018824	-0.38479	-0.00033245	1.794	0.0015499	863.977884085251	17.672	0.26598	17.672	17.539	17.805	0	282	49	1.13599383354359	0.0319707579937258	1.13599383354359	458.636359517736	0	12.9075982846894						1001	31	5	NaN	NaN	NaN	2.5342E-33	1	25221	244.45	197.11	1	616780			16566	972	13959	14361	16566	16566		
QLLQEQESVK	10	Unmodified	_QLLQEQESVK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.324785	1200.63502	1.0162	0.00061106	-0.039256	-2.3606E-05	0.97694	0.00058746	601.324772934997	5.2479	0.12418	5.2479	5.2036	5.3278	0	570	34	0.942920803299286	0.0222746380512064	0.942920803299286	382.010770984698	0	9.02424851119292						234	15	3	NaN	NaN	NaN	0.00061181	1	9487	108.3	73.372	1	87266			16567	718	13960	14362	16567	16567		
QLLQLYLQALEK	12	Unmodified	_QLLQLYLQALEK_			0	0	0	O00273	O00273	O00273	DFFA	DNA fragmentation factor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.429584	1458.84462	0.30539	0.00022306	-0.51695	-0.00037759	-0.21156	-0.00015453	730.42949340268	18.018	0.0887	18.018	17.982	18.071	0	435	28	1.03374239103424	0.0181066471151929	1.03374239103424	417.962473888087	0	7.32087518875289						169	11	3	NaN	NaN	NaN	9.4318E-06	1	17240	90.142	68.099	1	46731			16568	70	13961	14363	16568	16568		
QLLTLSSELSQAR	13	Unmodified	_QLLTLSSELSQAR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.401555	1444.78856	1.7002	0.0012299	0.21153	0.00015302	1.9117	0.001383	723.402009056148	12.387	0.25713	12.387	12.29	12.547	0	423	40	1.04178812298108	0.0261432202901304	1.04178812298108	421.254015508796	0	10.5711864846712						431	30	4	NaN	NaN	NaN	1.0429E-16	1	16831	165.39	110.95	1	350120			16569	710	13962	14364	16569	16569		
QLMETPANEMTPTR	14	Unmodified	_QLMETPANEMTPTR_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.881815	1617.74908	2.6742	0.0021658	-2.6523	-0.0021481	0.021847	1.7694E-05	809.880688798623	8.2544	0.1508	8.2544	8.1922	8.343	0	423	40	1.04178812298108	0.0261360051694259	1.04178812298108	420.826603114687	0	10.5575462340313						452	18	5	NaN	NaN	NaN	1.384E-06	1	22126	89.382	73.503	1	107130			16570	880	13963	14365	16570	16570		
QLNDLWDQIEQAHLELR	17	Unmodified	_QLNDLWDQIEQAHLELR_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.695632	2120.06507	0.34329	0.00024295	-1.4826	-0.0010493	-1.1394	-0.00080632	708.028969701452	17.619	0.070929	17.619	17.583	17.654	0	546	31	0.959108205975751	0.0202230534711471	0.959108205975751	579.97021338764	0	12.2288273251489						190	9	4	NaN	NaN	NaN	0.056825	1	33617	20.29	13.903	1	46699			16571	2640	13964	14366	16571	16571		
QLPHFTSEHIK	11	Unmodified	_QLPHFTSEHIK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.238455	1335.69353	-1.0812	-0.00048249	-0.0081963	-3.6575E-06	-1.0894	-0.00048614	446.238389201292	5.3721	0.18622	5.3721	5.2745	5.4608	0	828	25	0.767766820543916	0.016391000507895	0.767766820543916	466.034444651908	0	9.9493369791291						315	22	4	NaN	NaN	NaN	0.031661	1	13466	21.088	18.417	1	83594			16572	350	13965	14367	16572	16572		
QLPHFTSEHIK	11	Unmodified	_QLPHFTSEHIK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.854044	1335.69353	1.2944	0.00086579	-0.52884	-0.00035372	0.76559	0.00051207	668.852973643513	5.3632	0.12411	5.3632	5.3189	5.443	0	492	25	0.995464410099171	0.0161404424258682	0.995464410099171	402.83436202578	0	6.53154925628201						198	15	3	NaN	NaN	NaN	0.020428	1	13467	27.589	18.075	1	40663			16573	350	13965	14367	16573	16573		
QLPTLILFQGGK	12	Unmodified	_QLPTLILFQGGK_			0	0	0	Q9Y320	Q9Y320	Q9Y320	TMX2	Thioredoxin-related transmembrane protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.892638	1313.77072	-0.058043	-3.8186E-05	2.0266	0.0013333	1.9685	0.0012951	657.892658514579	16.333	0.10641	16.333	16.262	16.369	0	525	49	0.973257487423603	0.0323166232596742	0.973257487423603	393.91517509655	0	13.0797948891845						307	13	3	NaN	NaN	NaN	0.031505	1	12784	43.272	29.998	1	79132			16574	3366	13966	14368	16574	16574		
QLQAETEPIVK	11	Unmodified	_QLQAETEPIVK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.34826	1254.68197	1.5066	0.0009467	-0.92205	-0.00057937	0.5846	0.00036733	628.347622880976	6.321	0.17736	6.321	6.2678	6.4451	0	555	46	0.953040030838688	0.0303534869943584	0.953040030838688	385.921393149441	0	12.2912570393267						445	21	4	NaN	NaN	NaN	6.39E-06	1	11068	124.81	77.457	1	231900			16575	1304	13967	14369	16575	16575		
QLQALSSELAQAR	13	Unmodified	_QLQALSSELAQAR_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.886072	1413.75759	1.998	0.0014144	-1.428	-0.0010108	0.57008	0.00040355	707.886204633236	10.002	0.13299	10.002	9.9573	10.09	0	426	37	1.03977710643793	0.0241305373401517	1.03977710643793	420.528364511443	0	9.75937567735053						293	16	4	NaN	NaN	NaN	9.0739E-05	1	15893	87.942	74.668	1	87344			16576	962	13968	14370	16576	16576		
QLQDELEMLVER	12	Unmodified	_QLQDELEMLVER_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.879598	1501.74464	0.82716	0.00062192	1.5775	0.0011861	2.4047	0.001808	751.880924702291	16.431	0.30148	16.431	16.298	16.599	0	411	70	1.04982941439551	0.0462215064140965	1.04982941439551	424.352831470167	0	18.6832516337258						872	35	4	NaN	NaN	NaN	0.00026478	1	18574	75.474	39.234	1	300260			16577	1642	13969	14371	16577	16577		
QLQDEMLR	8	Unmodified	_QLQDEMLR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.760766	1031.50698	1.2678	0.00065517	-1.3778	-0.000712	-0.10997	-5.683E-05	517.26106659855	6.7111	0.3458	6.7111	6.587	6.9328	0	645	85	0.892219381832517	0.056939393815902	0.892219381832517	362.142433701394	0	23.1110992092789						777	40	4	NaN	NaN	NaN	0.00041579	1	5033	113.1	68.682	1	466110			16578	493	13970	14372	16578	16578		
QLQDIATLADQR	12	Unmodified	_QLQDIATLADQR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.364973	1370.71539	1.4446	0.00099154	1.8059	0.0012395	3.2505	0.0022311	686.365950465415	10.418	0.11525	10.418	10.347	10.463	0	486	40	0.999498404980629	0.0262227841979634	0.999498404980629	404.360944047956	0	10.6087910906269						279	14	3	NaN	NaN	NaN	0.00063205	1	14516	67.548	44.495	1	69805			16579	429	13971	14373	16579	16579		
QLQNISLAAASGGAK	15	Unmodified	_QLQNISLAAASGGAK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.893897	1427.77324	2.3272	0.0016637	0.51563	0.00036862	2.8428	0.0020323	714.894627881805	8.352	0.097593	8.352	8.3076	8.4051	0	360	34	1.08395544855938	0.0220602476695482	1.08395544855938	438.354190803476	0	8.92121722249846						187	12	3	NaN	NaN	NaN	0.0042786	1	16329	37.504	14.606	1	42073			16580	1737	13972	14374	16580	16580		
QLQQAQAAGAEQEVEK	16	Unmodified	_QLQQAQAAGAEQEVEK_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.431572	1726.84859	3.769	0.003258	-3.4367	-0.0029708	0.33224	0.0002872	864.428459546388	4.9997	0.15959	4.9997	4.9642	5.1238	0	363	52	1.08195024817156	0.0340931168353487	1.08195024817156	436.815450369695	0	13.7644038717186						579	19	5	NaN	NaN	NaN	1.125E-33	1	25235	226.85	194.8	1	232730			16581	1013	13973	14375	16581	16581		
QLSAFGEYVAEILPK	15	Unmodified	_QLSAFGEYVAEILPK_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.948338	1663.88212	1.4401	0.0011995	-0.32457	-0.00027035	1.1155	0.00092915	833.449614535394	19.117	0.19501	19.117	18.984	19.179	0	306	76	1.12000185836644	0.0500541343932148	1.12000185836644	452.314242910801	0	20.2144288721483						525	23	2	NaN	NaN	NaN	0.0031376	1	23461	62.705	55.958	1	114690			16582	338	13974	14376	16582	16582		
QLSAQGQMTQLCELINK	17	Unmodified	_QLSAQGQMTQLCELINK_			0	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.492792	1960.97103	0.63231	0.00062061	1.3477	0.0013228	1.98	0.0019434	981.49464855282	14.746	0.070974	14.746	14.719	14.79	0	165	43	1.21370334790578	0.0278249138600277	1.21370334790578	489.541916852136	0	11.2230568456345						263	9	4	NaN	NaN	NaN	0.00012763	1	30945	95.656	82.438	1	53060			16583	3306	13975	14377	16583	16583		
QLSDAISIIGR	11	Unmodified	_QLSDAISIIGR_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.83532	1171.65609	1.0062	0.00059045	-1.0911	-0.00064029	-0.084928	-4.9839E-05	586.834824897645	12.626	0.23943	12.626	12.564	12.804	0	585	40	0.932794566565362	0.0263355149208984	0.932794566565362	378.014460565572	0	10.67245224551						573	28	4	NaN	NaN	NaN	2.6704E-05	1	8655	127.94	65.065	1	413880			16584	1264	13976	14378	16584	16584		
QLSESESSLEMDDER	15	Unmodified	_QLSESESSLEMDDER_			0	0	0	Q16204	Q16204	Q16204	CCDC6	Coiled-coil domain-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.872895	1753.73124	2.0595	0.001808	3.6671	0.0032192	5.7266	0.0050272	877.875340920364	7.066	0.097646	7.066	7.0214	7.1191	0	369	28	1.07793901817685	0.0180542692060639	1.07793901817685	435.142846098135	0	7.28815448190755						151	12	3	NaN	NaN	NaN	1.9896E-09	1	25992	135.21	123.19	1	27522			16585	1879	13977	14379	16585	16585		
QLSEVFIQLPSR	12	Unmodified	_QLSEVFIQLPSR_			0	0	0	P51531;P51532	P51531;P51532	P51532	SMARCA2;SMARCA4	Probable global transcription activator SNF2L2;Transcription activator BRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.895909	1415.77726	1.5713	0.0011139	-4.3145	-0.0030586	-2.7432	-0.0019447	708.892752007557	14.311	0.13298	14.311	14.249	14.382	-1.7764E-15	471	40	1.00957851518677	0.0261974290560794	1.00957851518677	408.309188333511	0	10.5951650450224						266	16	3	NaN	NaN	NaN	0.00050722	1	15975	73.655	62.299	1	83647			16586	1187;1186	13978	14380	16586	16586		
QLSQSLLPAIVELAEDAK	18	Unmodified	_QLSQSLLPAIVELAEDAK_			0	0	0	P30154;P30153	P30154;P30153	P30153	PPP2R1B;PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.357846	1924.05171	0.2866	0.0001841	-1.3444	-0.00086362	-1.0579	-0.00067952	642.691344704549	19.995	0.062077	19.995	19.969	20.031	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	569.33411350166	0	12.253878371521						166	8	4	NaN	NaN	NaN	8.3866E-05	1	30156	115.35	106.97	1	78765			16587	905;906	13979	14381	16587	16587		
QLSQSLLPAIVELAEDAK	18	Unmodified	_QLSQSLLPAIVELAEDAK_			0	0	0	P30154;P30153	P30154;P30153	P30153	PPP2R1B;PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform;Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.03313	1924.05171	1.1673	0.0011241	0.9071	0.00087357	2.0744	0.0019977	963.535617976824	19.995	0.079824	19.995	19.96	20.04	0	168	52	1.21171599086077	0.0337989921039494	1.21171599086077	488.806228205262	0	13.634513344777						280	10	5	NaN	NaN	NaN	8.2982E-26	1	30158	166.65	130.81	1	143310			16588	905;906	13979	14381	16588	16588		
QLSSEELEQFQK	12	Unmodified	_QLSSEELEQFQK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.362096	1464.70964	1.8295	0.0013417	2.8685	0.0021037	4.6981	0.0034454	733.365067316617	9.1238	0.24828	9.1238	8.9908	9.2391	0	447	103	1.02569221487577	0.0683699381700238	1.02569221487577	414.69201454138	0	27.6422760966657						848	29	5	NaN	NaN	NaN	3.9509E-05	1	17415	120.65	60.653	1	422450			16589	1036	13980	14382	16589	16589		
QLSSGVSEIR	10	Unmodified	_QLSSGVSEIR_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.290745	1074.56694	1.5219	0.00081922	-8.9166	-0.0047997	-7.3947	-0.0039805	538.286030045731	5.2213	0.32813	5.2213	5.1415	5.4697	0	615	46	0.912521036363781	0.0304377111147065	0.912521036363781	370.187175158855	0	12.3478252520663						553	38	3	NaN	NaN	NaN	2.9876E-05	1	6073	130.31	55.067	1	332500			16590	516	13981	14383	16590	16590		
QLSSSVTGLTNIEEENCQR	19	Unmodified	_QLSSSVTGLTNIEEENCQR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1083.01059	2164.00662	1.6615	0.0017994	-1.6779	-0.0018172	-0.016461	-1.7828E-05	1083.51135033226	10.569	0.088675	10.569	10.516	10.605	0	153	28	1.22165005014568	0.0178764027119285	1.22165005014568	492.422150605553	0	7.20561233345768						155	11	3	NaN	NaN	NaN	9.2425E-08	1	34234	96.27	93.376	1	26561			16591	1095	13982	14384	16591	16591		
QLSSSVTGLTNIEEENCQR	19	Unmodified	_QLSSSVTGLTNIEEENCQR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.342818	2164.00662	1.2055	0.00087076	1.885	0.0013616	3.0905	0.0022324	722.678912249655	10.569	0.088672	10.569	10.534	10.622	0	543	25	0.961130371139249	0.0161762030929075	0.961130371139249	581.11625640645	0	9.78041571309268						193	11	4	NaN	NaN	NaN	2.1148E-08	1	34235	156.02	143.34	1	40855			16592	1095	13982	14384	16592	16592		
QLTCTEEMAQR	11	Unmodified	_QLTCTEEMAQR_			0	0	0	Q15599	Q15599	Q15599	SLC9A3R2	Na(+)/H(+) exchange regulatory cofactor NHE-RF2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.808119	1365.60168	2.2376	0.0015301	-0.48956	-0.00033476	1.748	0.0011953	683.808320475846	4.5475	0.1596	4.5475	4.4854	4.645	0	519	37	0.97729762293174	0.024237464198638	0.97729762293174	395.394101533166	0	9.80596919034167						253	19	3	NaN	NaN	NaN	0.00023345	1	14355	97.277	95.118	1	55920			16593	1856	13983	14385	16593	16593		
QLTFEEIAK	9	Unmodified	_QLTFEEIAK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.792589	1077.57063	1.0275	0.00055461	2.1629	0.0011675	3.1904	0.0017222	539.792586769542	10.135	0.13302	10.135	10.081	10.214	0	630	40	0.902373728295776	0.0263830055416011	0.902373728295776	366.057697025612	0	10.7025525526015						311	16	3	NaN	NaN	NaN	0.013139	1	6155	49.96	27.574	1	139350			16594	3300	13984	14386	16594	16594		
QLVAEQVTYQR	11	Unmodified	_QLVAEQVTYQR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.856783	1333.69901	1.6771	0.0011201	-3.7616	-0.0025122	-2.0844	-0.0013921	667.855370054521	6.7732	0.14185	6.7732	6.7289	6.8707	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	394.671465572337	0	8.17473009750478						236	17	3	NaN	NaN	NaN	1.4813E-07	1	13401	101.82	72.508	1	127070			16595	1144	13985	14387	16595	16595		
QLVARPDVVEMHDVTAQDPK	20	Unmodified	_QLVARPDVVEMHDVTAQDPK_			0	0	1	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	750.051198	2247.13177	1.5586	0.001169	0.97652	0.00073244	2.5351	0.0019015	750.385539133635	8.3874	0.10646	8.3874	8.3253	8.4318	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	621.22206113343	0	10.9510613867182						219	13	4	NaN	NaN	NaN	0.00028944	1	35163	74.643	61.298	1	75501			16596	1667	13986	14388	16596	16596		
QLVDTTVELANK	12	Unmodified	_QLVDTTVELANK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.864274	1329.714	1.1761	0.00078314	-0.92471	-0.00061573	0.25142	0.00016741	665.863600648645	9.1858	0.14187	9.1858	9.1415	9.2834	0	510	28	0.983355730988811	0.0181718123582917	0.983355730988811	397.952671457116	0	7.35392192805745						262	17	4	NaN	NaN	NaN	3.7006E-05	1	13289	120.65	98.609	1	88278			16597	343	13987	14389	16597	16597		
QLVHELDEAEYR	12	Unmodified	_QLVHELDEAEYR_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.247567	1500.72087	-0.89931	-0.00045078	3.6754	0.0018423	2.7761	0.0013915	501.248646356133	7.066	0.15084	7.066	7.0214	7.1723	0	741	34	0.827064408645228	0.0224515301209383	0.827064408645228	501.463114782167	0	13.612741774868						348	18	5	NaN	NaN	NaN	0.0003242	1	18541	87.942	80.791	1	103410			16598	1560	13988	14390	16598	16598		
QLVHELDEAEYR	12	Unmodified	_QLVHELDEAEYR_			0	0	0	Q06323	Q06323	Q06323	PSME1	Proteasome activator complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.367712	1500.72087	1.614	0.0012127	1.2145	0.0009125	2.8285	0.0021252	751.368997074918	7.0747	0.15082	7.0747	7.0303	7.1811	0	423	52	1.04178812298108	0.0342014530242964	1.04178812298108	421.105075932585	0	13.8246973209759						383	18	3	NaN	NaN	NaN	0.0002957	1	18542	73.655	70.31	1	140510			16599	1560	13988	14390	16599	16599		
QLVPASGLTVMDLEAEGTCLR	21	Unmodified	_QLVPASGLTVMDLEAEGTCLR_			0	0	0	Q6P996;Q6P474	Q6P996	Q6P996	PDXDC1;PDXDC2P	Pyridoxal-dependent decarboxylase domain-containing protein 1;Putative pyridoxal-dependent decarboxylase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1130.56923	2259.1239	-0.23388	-0.00026441	0.14346	0.00016219	-0.09042	-0.00010223	1131.07141263824	16.945	0.097556	16.945	16.901	16.998	0	69	70	1.27715511956461	0.0455403764010889	1.27715511956461	514.656836336946	0	18.351463878693						431	12	4	NaN	NaN	NaN	1.6419E-05	1	35264	55.354	51.048	1	70777			16600	2069	13989	14391	16600	16600		
QLWGLLIEETEK	12	Unmodified	_QLWGLLIEETEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.895574	1457.7766	0.030982	2.2614E-05	-0.89511	-0.00065334	-0.86413	-0.00063073	729.894826380636	16.963	0.17737	16.963	16.892	17.069	0	435	37	1.03374239103424	0.0241405316442127	1.03374239103424	417.965352131746	0	9.76056113866645						354	21	4	NaN	NaN	NaN	4.8411E-05	1	17207	83.775	72.987	1	81397			16601	1511	13990	14392	16601	16601		
QLWIWLHPTLK	11	Unmodified	_QLWIWLHPTLK_			0	0	0	Q99575	Q99575	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.946724	1433.81834	-1.8909	-0.00090562	-0.45891	-0.00021979	-2.3498	-0.0011254	479.281005573349	15.482	0.053309	15.482	15.455	15.508	0	774	19	0.804600385996946	0.0122624806871617	0.804600385996946	488.050484252335	0	7.43811430078898						73	7	2	NaN	NaN	NaN	0.0030474	1	16509	49.16	47.657	1	19370			16602	2652	13991	14393	16602	16602		
QLYEEEIR	8	Unmodified	_QLYEEEIR_			0	0	0	P05787;CON__P05787;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.272021	1078.52949	1.776	0.00095951	1.7587	0.0009502	3.5347	0.0019097	540.272975765082	6.1968	0.28379	6.1968	6.1436	6.4274	0	612	37	0.914549654013882	0.0243383549190614	0.914549654013882	370.992832023736	0	9.87300708998396						582	33	3	NaN	NaN	NaN	0.00088158	1	6172	105.04	58.205	1	595460		+	16603	28	13992	14394	16603	16603		
QLYEEEIRELQSQISDTSVVLSMDNSR	27	Unmodified	_QLYEEEIRELQSQISDTSVVLSMDNSR_			0	0	1	P05787;CON__P05787	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1057.18211	3168.52449	1.3156	0.0013908	-1.2865	-0.00136	0.029097	3.0761E-05	1057.51538823665	18.984	0.070945	18.984	18.949	19.02	0	387	40	1.06589869032374	0.0260963753447068	1.06589869032374	643.157214018938	0	15.746404620871						324	9	5	NaN	NaN	NaN	0.003685	1	38430	17.992	15.622	1	79681		+	16604	28	13993	14395	16604	16604		
QLYETTDTTTR	11	Unmodified	_QLYETTDTTTR_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.820064	1327.62557	2.1963	0.0014601	-1.9238	-0.001279	0.27241	0.0001811	664.818355914905	4.2371	0.12413	4.2371	4.2017	4.3258	0	531	34	0.969216233931596	0.0222284349441159	0.969216233931596	392.236930879968	0	8.99573572491403						258	15	4	NaN	NaN	NaN	0.00025544	1	13205	101.82	75.361	1	53650			16605	3235	13994	14396	16605	16605		
QLYHLGVVEAYSGLTK	16	Unmodified	_QLYHLGVVEAYSGLTK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.320955	1776.94104	0.65161	0.00038662	-0.88013	-0.0005222	-0.22852	-0.00013559	593.319473683402	12.352	0.20396	12.352	12.245	12.449	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	554.947567501656	0	12.279833509363						521	24	5	NaN	NaN	NaN	7.4237E-05	1	26605	104.49	94.748	1	277650			16606	1575	13995	14397	16606	16606		
QLYHLGVVEAYSGLTK	16	Unmodified	_QLYHLGVVEAYSGLTK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.477794	1776.94104	2.1354	0.0018994	0.11142	9.9104E-05	2.2468	0.0019985	889.477951423972	12.352	0.133	12.352	12.307	12.44	0	252	49	1.15595906938629	0.031926818196472	1.15595906938629	466.590215196852	0	12.8869104169506						572	16	5	NaN	NaN	NaN	8.9049E-09	1	26606	109.47	90.656	1	247290			16607	1575	13995	14397	16607	16607		
QLYQILTDFDIR	12	Unmodified	_QLYQILTDFDIR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.906473	1523.79839	0.88758	0.00067714	-0.32696	-0.00024944	0.56061	0.0004277	762.906226309129	18.293	0.1064	18.293	18.248	18.355	0	420	31	1.04379886199097	0.0201060050174831	1.04379886199097	421.859454927392	0	8.12599881673015						174	13	3	NaN	NaN	NaN	0.00039642	1	19245	72.922	50.024	1	38931			16608	772	13996	14398	16608	16608		
QLYQTLTDYDIR	12	Unmodified	_QLYQTLTDYDIR_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.885738	1527.75692	1.7426	0.0013329	0.54361	0.0004158	2.2863	0.0017487	764.885813083986	12.298	0.16849	12.298	12.21	12.378	0	408	55	1.0518390438467	0.0361658587577258	1.0518390438467	425.099037616514	0	14.6163729540398						591	20	5	NaN	NaN	NaN	3.4836E-07	1	19352	110.52	93.53	1	177640			16609	1450	13997	14399	16609	16609		
QLYTVTMDVHSR	12	Unmodified	_QLYTVTMDVHSR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.910009	1448.7082	-0.032791	-1.5868E-05	-1.1011	-0.00053281	-1.1338	-0.00054868	484.243242480401	7.6334	0.12421	7.6334	7.5801	7.7044	-8.8818E-16	732	22	0.833184998970724	0.014277408192748	0.833184998970724	505.339631994928	0	8.65946963864877						166	15	3	NaN	NaN	NaN	0.038537	1	16940	16.288	13.185	1	39847			16610	2841	13998	14400	16610	16610		
QLYTVTMDVHSR	12	Unmodified	_QLYTVTMDVHSR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.361376	1448.7082	2.2093	0.0016025	0.3758	0.00027259	2.5851	0.0018751	725.361769166288	7.6334	0.097658	7.6334	7.5979	7.6956	-8.8818E-16	408	25	1.0518390438467	0.0160759277723759	1.0518390438467	425.307258238068	0	6.50024241303862						138	12	2	NaN	NaN	NaN	0.00068247	1	16942	47.334	20.387	1	43062			16611	2841	13998	14400	16611	16611		
QLYVLGHEAMK	11	Unmodified	_QLYVLGHEAMK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.839548	1287.66454	2.5498	0.0016442	-0.76489	-0.00049323	1.7849	0.001151	644.83920701833	7.7753	0.2129	7.7753	7.7309	7.9438	0	474	46	1.00756305028564	0.0302403378372377	1.00756305028564	407.886016085352	0	12.2420238832788						634	25	4	NaN	NaN	NaN	1.782E-08	1	11999	140.05	90.725	1	281650			16612	804	13999	14401	16612	16612		
QLYVLGHEAMK	11	Oxidation (M)	_QLYVLGHEAM(Oxidation (M))K_	QLYVLGHEAM(1)K	QLYVLGHEAM(100)K	0	1	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.837005	1303.65946	1.7441	0.0011386	-0.99211	-0.00064768	0.75201	0.00049094	652.83671980265	5.9219	0.088733	5.9219	5.8953	5.984	0	456	25	1.01965166402748	0.0161136996889994	1.01965166402748	412.726027142799	0	6.52236787310693						149	11	3	NaN	NaN	NaN	0.0015633	1	12466	102.55	67.614	1	38886			16613	804	13999	14402	16613	16613	269	
QMAEIAVNAVLTVADMER	18	Unmodified	_QMAEIAVNAVLTVADMER_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.332537	1959.97578	0.22532	0.00014744	0.54385	0.00035586	0.76917	0.0005033	654.332737335814	19.685	0.097534	19.685	19.649	19.747	0	552	40	0.955063035883597	0.0262881524128359	0.955063035883597	577.830702121934	0	15.9048156985198						238	12	4	NaN	NaN	NaN	0.0019647	1	30917	73.502	70.787	1	48344			16614	1113	14000	14403	16614	16614		
QMAEIAVNAVLTVADMER	18	Unmodified	_QMAEIAVNAVLTVADMER_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.995168	1959.97578	1.2433	0.0012197	-0.27597	-0.00027073	0.96737	0.00094898	981.496811029679	19.676	0.16846	19.676	19.632	19.8	0	213	37	1.18187287897418	0.0239023706584269	1.18187287897418	476.704943566917	0	9.64095078121329						401	20	4	NaN	NaN	NaN	5.5702E-14	1	30918	155.28	145.54	1	103720			16615	1113	14000	14403	16615	16615		
QMCICADFEK	10	Unmodified	_QMCICADFEK_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.269783	1300.52501	0.8372	0.00054525	2.1094	0.0013738	2.9466	0.0019191	651.271366957776	9.3455	0.12419	9.3455	9.3011	9.4253	0	528	34	0.971237000454584	0.0222253598495629	0.971237000454584	393.139069175975	0	8.99642134645671						240	15	3	NaN	NaN	NaN	0.0038918	1	12356	49.16	47.189	1	59248			16616	705	14001	14404	16616	16616		
QMEDGHTLFDYEVR	14	Unmodified	_QMEDGHTLFDYEVR_			0	0	0	Q96T88	Q96T88	Q96T88	UHRF1	E3 ubiquitin-protein ligase UHRF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.594638	1738.76208	-0.36565	-0.0002123	0.26689	0.00015495	-0.098766	-5.7343E-05	580.594830560583	10.605	0.079771	10.605	10.569	10.649	0	690	28	0.86171403876517	0.0183235429829339	0.86171403876517	521.818448035194	0	11.0959811860121						169	10	3	NaN	NaN	NaN	0.00012548	1	25557	44.82	30.457	1	39020			16617	2632	14002	14405	16617	16617		
QMEQISQFLQAAER	14	Unmodified	_QMEQISQFLQAAER_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.278761	1677.81445	-0.5846	-0.00032754	-1.7572	-0.00098454	-2.3418	-0.0013121	560.277517248593	15.375	0.1064	15.375	15.34	15.446	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	520.734943443056	0	9.86660949586792						205	13	4	NaN	NaN	NaN	2.9003E-06	1	23850	134.2	127.45	1	55931			16618	1001	14003	14406	16618	16618		
QMEQISQFLQAAER	14	Unmodified	_QMEQISQFLQAAER_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.914504	1677.81445	1.9163	0.0016096	-0.54936	-0.00046141	1.367	0.0011481	839.91428740574	15.375	0.21292	15.375	15.296	15.508	0	378	64	1.07192009927972	0.0421266461589811	1.07192009927972	432.866671713971	0	17.0117354134543						1002	25	5	NaN	NaN	NaN	3.0689E-55	1	23852	285.5	271.04	1	392470			16619	1001	14003	14406	16619	16619		
QMFGNADMNTFPTFK	15	Unmodified	_QMFGNADMNTFPTFK_			0	0	0	P18859	P18859	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.892183	1747.76981	1.412	0.0012354	1.677	0.0014672	3.089	0.0027026	874.893971253547	14.808	0.15074	14.808	14.764	14.914	0	300	79	1.12400150285141	0.0520312204017357	1.12400150285141	453.749513537414	0	21.0045457111516						991	18	6	NaN	NaN	NaN	0.069347	1	25824	21.668	20.929	1	396590			16620	760	14004	14407	16620	16620		
QMFGNADMNTFPTFK	15	Oxidation (M)	_QM(Oxidation (M))FGNADMNTFPTFK_	QM(1)FGNADMNTFPTFK	QM(40)FGNADM(-40)NTFPTFK	0	1	0	P18859	P18859	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.88964	1763.76473	2.1087	0.0018618	1.44	0.0012714	3.5487	0.0031331	883.392437071101	13.088	0.16848	13.088	13.017	13.185	0	315	46	1.11400032671325	0.0300241961633021	1.11400032671325	449.680031778889	0	12.1196387120312						424	20	3	NaN	NaN	NaN	0.042664	1	26232	48.822	47.77	2	101920			16621	760	14004	14408	16621	16621	258	
QMFHIITGPNMGGK	14	Unmodified	_QMFHIITGPNMGGK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.923373	1529.74829	-0.43664	-0.00022309	0.33511	0.00017121	-0.10153	-5.1876E-05	511.257814156841	10.099	0.079792	10.099	10.073	10.152	0	732	49	0.833184998970724	0.0326272809227941	0.833184998970724	505.086657917958	0	19.7790458284805						222	10	3	NaN	NaN	NaN	0.038988	1	19422	53.517	34.261	1	47177			16622	1063	14005	14409	16622	16622		
QMFLTQTDTGDDR	13	Unmodified	_QMFLTQTDTGDDR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.340837	1526.66712	2.3305	0.0017813	2.0666	0.0015796	4.3971	0.0033609	764.343224461254	8.2898	0.40812	8.2898	8.0591	8.4672	0	432	49	1.035754240522	0.0322007138420592	1.035754240522	418.601068004986	0	13.0139493303118						461	47	3	NaN	NaN	NaN	1.0091E-07	1	19306	141.44	135.95	1	239150			16623	1465	14006	14410	16623	16623		
QMGFPLIYVEAEQVEDDR	18	Unmodified	_QMGFPLIYVEAEQVEDDR_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.00679	2137.99902	0.75153	0.00080414	4.3601	0.0046653	5.1116	0.0054694	1070.01298307027	18.275	0.22168	18.275	18.142	18.364	0	150	58	1.22363604450103	0.037718386828598	1.22363604450103	493.260910192278	0	15.204689255166						433	26	3	NaN	NaN	NaN	0.042082	1	33849	31.801	30.706	1	79996			16624	1277	14007	14411	16624	16624		
QMGQPCDAYQK	11	Unmodified	_QMGQPCDAYQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.284279	1324.55401	2.1584	0.0014316	-5.42	-0.003595	-3.2617	-0.0021634	663.279382964255	3.6785	0.19504	3.6785	3.6253	3.8204	0	549	49	0.957085760909907	0.0323703311033066	0.957085760909907	387.337055856324	0	13.1004234507982						402	23	3	NaN	NaN	NaN	0.011315	1	13120	53.517	46.366	1	82190			16625	718	14008	14412	16625	16625		
QMIAVADENQNHHLEPEEVLK	21	Unmodified	_QMIAVADENQNHHLEPEEVLK_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	815.400667	2443.18017	1.62	0.0013209	-0.94312	-0.00076902	0.67683	0.00055189	815.398974711296	9.4608	0.19505	9.4608	9.3721	9.5672	0	414	61	1.04781950764076	0.0402064754479616	1.04781950764076	633.068507186049	0	24.2918300389005						615	23	4	NaN	NaN	NaN	0.0010628	1	36547	56.08	49.091	1	141880			16626	2709	14009	14413	16626	16626		
QMLPIVLK	8	Unmodified	_QMLPIVLK_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.296256	940.57796	0.39258	0.00018502	-1.49	-0.00070224	-1.0974	-0.00051722	471.295511749545	12.653	0.1064	12.653	12.6	12.706	0	603	31	0.920633820089869	0.0202763400038137	0.920633820089869	374.150889355236	0	8.24042141375548						191	13	3	NaN	NaN	NaN	0.028207	1	3079	46.835	30.288	1	52955			16627	906	14010	14414	16627	16627		
QMNPFIEDILNR	12	Unmodified	_QMNPFIEDILNR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.253776	1488.7395	-2.8656	-0.0014249	1.7968	0.00089344	-1.0688	-0.00053147	497.254694752126	17.246	0.088694	17.246	17.211	17.3	0	768	13	0.808687310729125	0.00817271247643947	0.808687310729125	490.356787963056	0	4.95561756160015						91	11	2	NaN	NaN	NaN	1.9076E-07	1	18192	97.277	85.32	1	19772			16628	209	14011	14415	16628	16628		
QMNPFIEDILNR	12	Unmodified	_QMNPFIEDILNR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.377026	1488.7395	0.23515	0.00017528	0.69528	0.00051824	0.93043	0.00069352	745.377785832193	17.238	0.22169	17.238	17.14	17.362	0	444	34	1.02770517576159	0.022139515615524	1.02770517576159	415.443106025544	0	8.94975460875565						580	26	4	NaN	NaN	NaN	5.4675E-05	1	18193	85.622	72.348	1	164920			16629	209	14011	14415	16629	16629		
QMQLENVSVALEFLDR	16	Unmodified	_QMQLENVSVALEFLDR_			0	0	0	O75369;P21333	O75369;P21333	O75369	FLNB;FLNA	Filamin-B;Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.48275	1890.95095	0.78994	0.00074767	-0.044283	-4.1913E-05	0.74566	0.00070575	946.986440070422	19.215	0.053204	19.215	19.188	19.242	0	258	55	1.15196821829984	0.0359127357341398	1.15196821829984	464.762222280752	0	14.489013327654						245	7	4	NaN	NaN	NaN	5.0339E-09	1	29393	88.42	81.673	1	49724			16630	326;792	14012	14416	16630	16630		
QMQSSFTSSEQELER	15	Unmodified	_QMQSSFTSSEQELER_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.899248	1785.78394	3.0527	0.0027288	-1.429	-0.0012773	1.6237	0.0014514	893.898308369619	7.997	0.12428	7.997	7.9615	8.0858	0	339	37	1.09798411722691	0.0240375557134762	1.09798411722691	443.172273548306	0	9.70212414637672						312	15	4	NaN	NaN	NaN	9.9813E-05	1	26840	90.156	88.172	1	68552			16631	2167	14013	14417	16631	16631		
QMSVPGIFNPHEIPEEMCD	19	Unmodified	_QMSVPGIFNPHEIPEEMCD_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1115.48431	2228.95406	1.219	0.0013597	0.49122	0.00054794	1.7102	0.0019077	1115.98594101464	16.032	0.079803	16.032	15.996	16.076	0	153	76	1.22165005014568	0.0496022599376962	1.22165005014568	492.330619018992	0	19.9899401116996						461	10	3	NaN	NaN	NaN	2.1642E-10	1	34974	86.135	84.287	1	87216			16632	135	14014	14418	16632	16632		
QMTDPNVALTFLEK	14	Unmodified	_QMTDPNVALTFLEK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.910898	1605.80724	1.9334	0.0015543	-2.3928	-0.0019236	-0.45938	-0.0003693	803.91140994312	15.606	0.2128	15.606	15.508	15.721	-1.7764E-15	357	34	1.08596037261705	0.0220572074083873	1.08596037261705	438.697519745688	0	8.91049289326884						350	25	4	NaN	NaN	NaN	0.0020429	1	21777	74.524	65.547	1	151170			16633	3300	14015	14419	16633	16633		
QMVETELK	8	Unmodified	_QMVETELK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.252243	976.489932	1.7044	0.00083387	0.62056	0.00030361	2.3249	0.0011375	489.252906386537	5.1327	0.29262	5.1327	5.044	5.3366	0	678	46	0.869855008346864	0.0305222862766339	0.869855008346864	353.326797139874	0	12.3978611929875						677	34	4	NaN	NaN	NaN	0.0085397	1	3763	85.813	74.164	1	469220			16634	1375	14016	14420	16634	16634		
QMVIDVLHPGK	11	Unmodified	_QMVIDVLHPGK_			0	0	0	P62847	P62847	P62847	RPS24	40S ribosomal protein S24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.897152	1235.66963	-1.6321	-0.00067388	-0.085085	-3.5131E-05	-1.7172	-0.00070901	413.231919112391	10.055	0.17733	10.055	9.975	10.152	0	831	55	0.76571780291124	0.0368643540148709	0.76571780291124	465.175169831593	0	22.3951723133533						355	21	2	NaN	NaN	NaN	0.058001	1	10497	20.183	7.5869	1	127620			16635	1403	14017	14421	16635	16635		
QMVIDVLHPGK	11	Unmodified	_QMVIDVLHPGK_			0	0	0	P62847	P62847	P62847	RPS24	40S ribosomal protein S24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.842091	1235.66963	1.7895	0.0011074	0.27678	0.00017128	2.0663	0.0012787	618.84224839852	10.046	0.19505	10.046	9.9484	10.143	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	394.992381845063	0	9.00013758479707						553	23	4	NaN	NaN	NaN	3.085E-05	1	10498	95.311	72.925	1	288180			16636	1403	14017	14421	16636	16636		
QNADPQAVTMPATETK	16	Unmodified	_QNADPQAVTMPATETK_			0	0	0	Q9UNF1	Q9UNF1	Q9UNF1	MAGED2	Melanoma-associated antigen D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.409251	1700.80395	2.6649	0.0022689	-3.0742	-0.0026174	-0.40927	-0.00034845	851.908272212504	6.2767	0.19513	6.2767	6.1879	6.3831	0	336	58	1.09998710857178	0.0380516101948882	1.09998710857178	444.15161525634	0	15.3644383642896						659	23	4	NaN	NaN	NaN	4.5634E-12	1	24513	132.9	113.58	1	151380			16637	3295	14018	14422	16637	16637		
QNCADQIEVVFR	12	Unmodified	_QNCADQIEVVFR_			0	0	0	Q9NP92	Q9NP92	Q9NP92	MRPS30	28S ribosomal protein S30, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.856457	1477.69836	0.90197	0.00066733	0.51423	0.00038046	1.4162	0.0010478	740.358631776012	11.553	0.088708	11.553	11.509	11.598	0	438	25	1.03173026378327	0.0161003532377459	1.03173026378327	417.098921805994	0	6.50891052815928						137	11	3	NaN	NaN	NaN	0.04548	1	17813	16.992	14.113	1	40472			16638	2981	14019	14423	16638	16638		
QNCFDDFQCAAEYLIK	16	Unmodified	_QNCFDDFQCAAEYLIK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.44023	2020.8659	1.4002	0.0014162	0.80644	0.00081567	2.2066	0.0022319	1011.4415564836	17.708	0.088666	17.708	17.672	17.761	0	183	49	1.20177511391933	0.0318217315415521	1.20177511391933	484.629739227593	0	12.8324819511848						352	11	4	NaN	NaN	NaN	1.2901E-06	1	31999	102.57	97.75	1	79222			16639	1105	14020	14424	16639	16639		
QNDQVSFASLVEELK	15	Unmodified	_QNDQVSFASLVEELK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.933416	1705.85228	1.152	0.00098369	3.0285	0.0025862	4.1805	0.0035699	854.43742202492	18.089	0.11526	18.089	18.045	18.16	0	297	46	1.12600091227925	0.0299911493699134	1.12600091227925	454.644542776775	0	12.1095038591343						315	14	4	NaN	NaN	NaN	3.4108E-06	1	24657	104.49	102.01	1	88644			16640	2167	14021	14425	16640	16640		
QNFLLFDMTTHPLTNNNIK	19	Unmodified	_QNFLLFDMTTHPLTNNNIK_			0	0	0	Q9H4A6	Q9H4A6	Q9H4A6	GOLPH3	Golgi phosphoprotein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.384289	2260.13104	-0.086658	-6.5373E-05	-0.93098	-0.00070232	-1.0176	-0.00076769	754.718110677181	15.97	0.088669	15.97	15.925	16.014	0	591	43	0.928742107665821	0.0283750805572571	0.928742107665821	561.381543452298	0	17.1514206014098						332	11	4	NaN	NaN	NaN	4.1046E-05	1	35280	72.031	66.949	1	81752			16641	2894	14022	14426	16641	16641		
QNFLLFDMTTHPVTNTTEK	19	Unmodified	_QNFLLFDMTTHPVTNTTEK_			0	0	0	Q9H4A5	Q9H4A5	Q9H4A5	GOLPH3L	Golgi phosphoprotein 3-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.368416	2236.08342	-0.59582	-0.0004447	1.1463	0.00085557	0.55048	0.00041086	746.703217365883	14.71	0.044332	14.71	14.684	14.728	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	551.612864211624	0	11.0381033794506						118	6	3	NaN	NaN	NaN	0.0014013	1	35052	27.467	19.819	1	19978			16642	2893	14023	14427	16642	16642		
QNHESVQWCYDNFINYR	17	Unmodified	_QNHESVQWCYDNFINYR_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.332476	2271.9756	1.2519	0.00094939	-0.82266	-0.00062385	0.42928	0.00032554	758.666012228183	12.839	0.10642	12.839	12.795	12.901	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	552.785267652592	0	12.2608144637619						258	13	4	NaN	NaN	NaN	5.565E-14	1	35379	158.59	156.62	1	65176			16643	181	14024	14428	16643	16643		
QNIFEFFER	9	Unmodified	_QNIFEFFER_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.301113	1228.58767	0.0048963	3.0127E-06	0.43448	0.00026734	0.43938	0.00027035	615.301716663366	17.424	0.20398	17.424	17.335	17.539	0	603	61	0.920633820089869	0.0405751847328444	0.920633820089869	372.885081630575	0	16.4342008094005						402	24	2	NaN	NaN	NaN	0.01087	1	10258	56.378	47.401	1	167400			16644	1540	14025	14429	16644	16644		
QNLDALLNQLK	11	Unmodified	_QNLDALLNQLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.361702	1268.70885	0.7524	0.00047804	0.91159	0.00057919	1.664	0.0010572	635.361984598338	14.959	0.11528	14.959	14.897	15.012	0	528	40	0.971237000454584	0.0262627024268471	0.971237000454584	393.24268112003	0	10.6334658903615						292	14	4	NaN	NaN	NaN	4.6225E-05	1	11480	98.009	66.057	1	76555			16645	1737	14026	14430	16645	16645		
QNLEGDHSDAPMETETSFK	19	Unmodified	_QNLEGDHSDAPMETETSFK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.46294	2134.91133	2.1556	0.0023031	-0.68015	-0.00072671	1.4754	0.0015764	1068.96370677908	6.9328	0.044328	6.9328	6.9062	6.9505	0	192	37	1.1958073123591	0.0238761260820608	1.1958073123591	482.047363156788	0	9.62481455105882						107	6	3	NaN	NaN	NaN	0.060486	1	33809	16.675	16.24	1	16807			16646	450	14027	14431	16646	16646		
QNLEGDHSDAPMETETSFK	19	Unmodified	_QNLEGDHSDAPMETETSFK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.644386	2134.91133	1.1551	0.00082319	0.68248	0.00048636	1.8376	0.0013096	712.979488388857	6.9328	0.11525	6.9328	6.8974	7.0126	0	642	46	0.894250814548268	0.0304799546936941	0.894250814548268	540.726660017182	0	18.4303148857871						351	14	5	NaN	NaN	NaN	0.00056089	1	33810	53.773	53.439	1	94339			16647	450	14027	14431	16647	16647		
QNLFQEAEEFLYR	13	Unmodified	_QNLFQEAEEFLYR_			0	0	0	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.909744	1685.80494	1.533	0.0012938	-0.46236	-0.00039019	1.0707	0.00090356	843.909504175518	19.942	0.053204	19.942	19.933	19.986	0	333	34	1.10198982404297	0.0220298733175506	1.10198982404297	444.992258202376	0	8.8958381117564						179	7	5	NaN	NaN	NaN	8.1494E-24	1	24074	151.66	123.02	1	79887			16648	3274	14028	14432	16648	16648		
QNLIAEVSTK	10	Unmodified	_QNLIAEVSTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.808771	1101.60299	0.98799	0.00054518	-1.4326	-0.00079049	-0.44457	-0.00024532	551.807962465303	8.1745	0.31047	8.1745	8.1036	8.414	0	618	55	0.910492137470517	0.0365227258333037	0.910492137470517	369.249308831384	0	14.8117602729131						444	36	3	NaN	NaN	NaN	0.0050863	1	6767	69.915	48.64	1	199720			16649	922	14029	14433	16649	16649		
QNLIEELR	8	Unmodified	_QNLIEELR_			0	0	0	Q9UKD2	Q9UKD2	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.782556	1013.55056	0.072027	3.6574E-05	2.4104	0.001224	2.4825	0.0012606	507.783812253997	10.321	0.13301	10.321	10.223	10.356	0	657	40	0.884090832094921	0.0264269571469923	0.884090832094921	358.926831095167	0	10.7289247212094						203	16	2	NaN	NaN	NaN	0.0046976	1	4595	82.716	0	1	75749			16650	3260	14030	14434	16650	16650		
QNQFYDTQVIK	11	Unmodified	_QNQFYDTQVIK_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.348791	1382.68303	1.3072	0.00090501	1.9827	0.0013727	3.2899	0.0022777	692.350328778641	8.5293	0.21282	8.5293	8.4318	8.6446	0	510	34	0.983355730988811	0.0222069226755673	0.983355730988811	397.79581745232	0	8.98334212172125						449	25	4	NaN	NaN	NaN	0.035373	1	14905	23.836	20.957	1	142520			16651	2746	14031	14435	16651	16651		
QNVAYEYLCHLEEAK	15	Unmodified	_QNVAYEYLCHLEEAK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.961209	1865.8618	0.7812	0.00048666	0.35951	0.00022396	1.1407	0.00071062	623.295615799307	13.398	0.19513	13.398	13.336	13.531	0	585	31	0.932794566565362	0.0202622968311691	0.932794566565362	564.557768801076	0	12.263404504928						431	23	5	NaN	NaN	NaN	0.0034554	1	28830	62.454	60.47	1	172820			16652	1095	14032	14436	16652	16652		
QNVAYEYLCHLEEAK	15	Unmodified	_QNVAYEYLCHLEEAK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.938176	1865.8618	1.6341	0.0015261	0.66967	0.00062543	2.3037	0.0021516	933.938890039387	13.407	0.15964	13.407	13.354	13.513	0	210	40	1.18386433251387	0.0258889011438428	1.18386433251387	477.677500778744	0	10.4459144993744						533	19	4	NaN	NaN	NaN	6.1592E-09	1	28831	128.41	112.8	1	208650			16653	1095	14032	14436	16653	16653		
QNVQVFEFQLTAEDMK	16	Unmodified	_QNVQVFEFQLTAEDMK_			0	0	0	P42330	P42330	P42330	AKR1C3	Aldo-keto reductase family 1 member C3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.966933	1925.91931	1.1201	0.0010798	1.8789	0.0018112	2.999	0.002891	963.970095296824	15.65	0.14184	15.65	15.606	15.748	0	219	31	1.17788915118882	0.0199186411818211	1.17788915118882	475.157178497636	0	8.0351239621391						221	17	3	NaN	NaN	NaN	0.0074229	1	30181	40.224	36.719	1	49902			16654	1048	14033	14437	16654	16654		
QPAEHLQLLEEAAK	14	Unmodified	_QPAEHLQLLEEAAK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.2825	1575.82567	0.82188	0.00043254	0.17774	9.354E-05	0.99962	0.00052608	526.282318629372	9.0174	0.1064	9.0174	8.9819	9.0883	0	609	49	0.916577990479294	0.0324601421719642	0.916577990479294	555.494939151466	0	19.6725700245479						282	13	3	NaN	NaN	NaN	0.0037384	1	20855	73.655	38.702	1	68295			16655	951	14034	14438	16655	16655		
QPAEHLQLLEEAAK	14	Unmodified	_QPAEHLQLLEEAAK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.920112	1575.82567	2.5216	0.0019894	0.52286	0.0004125	3.0445	0.0024019	788.920290283615	9.0174	0.088663	9.0174	8.9819	9.0706	0	342	43	1.09598084995137	0.0280515443878693	1.09598084995137	442.817529188303	0	11.3338801278358						256	11	3	NaN	NaN	NaN	0.00034069	1	20856	72.846	56.559	1	64445			16656	951	14034	14438	16656	16656		
QPAENVNQYLTDPK	14	Unmodified	_QPAENVNQYLTDPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.899377	1615.7842	3.1885	0.0025792	-0.4901	-0.00039644	2.6984	0.0021828	808.899039542722	8.4672	0.44352	8.4672	8.2987	8.7422	0	357	103	1.08596037261705	0.0682380231754722	1.08596037261705	438.674346830648	0	27.5647905764521						1742	51	5	NaN	NaN	NaN	6.3964E-17	1	22075	210.4	196.6	1	1247400			16657	804	14035	14439	16657	16657		
QPAENVNQYLTDPK	14	Unmodified	_QPAENVNQYLTDPK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.899377	1615.7842	3.1025	0.0025096	9.4801	0.0076685	12.583	0.010178	808.9072780016	8.343	0.29274	8.343	8.1567	8.4495	0	333	31	1.10198982404297	0.0200230200251346	1.10198982404297	445.149415620825	0	8.08831031710616						439	34	3	NaN	NaN	NaN	1.1802E-07	1	22079	135.5	112.6	1	100660			16658	804	14035	14439	16658	16658		
QPAIISQLDPVNER	14	Unmodified	_QPAIISQLDPVNER_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.425562	1578.83657	1.8456	0.0014588	-0.59177	-0.00046775	1.2539	0.00099108	790.425168456545	12.236	0.18625	12.236	12.157	12.343	0	402	64	1.05585747106793	0.0421847776548527	1.05585747106793	426.599090484057	0	17.0439555270945						909	22	5	NaN	NaN	NaN	2.0419E-11	1	20944	147.72	135.14	1	410210			16659	1575	14036	14440	16659	16659		
QPAIMPGQSYGLEDGSCSYK	20	Unmodified	_QPAIMPGQSYGLEDGSCSYK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1094.4879	2186.96125	2.0279	0.0022195	-0.5699	-0.00062375	1.458	0.0015957	1094.98915433748	10.498	0.13306	10.498	10.436	10.569	0	159	55	1.21767724410157	0.035765079225333	1.21767724410157	490.787930882908	0	14.4152067519464						656	16	5	NaN	NaN	NaN	1.0189E-05	1	34541	91.457	86.375	1	169530			16660	704	14037	14441	16660	16660		
QPAIMPGQSYGLEDGSCSYK	20	Unmodified	_QPAIMPGQSYGLEDGSCSYK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.994361	2186.96125	1.7676	0.0012903	1.9741	0.0014411	3.7417	0.0027314	730.330093046985	10.489	0.15078	10.489	10.445	10.596	0	435	37	1.03374239103424	0.0241471979634897	1.03374239103424	624.976949964035	0	14.5988422882619						435	18	5	NaN	NaN	NaN	0.00092534	1	34542	67.838	67.838	1	111490			16661	704	14037	14441	16661	16661		
QPALDVLYDVMK	12	Unmodified	_QPALDVLYDVMK_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.365595	1390.71664	0.52237	0.00036376	2.1184	0.0014752	2.6408	0.001839	696.36728527985	17.406	0.3015	17.406	17.211	17.513	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.712672327432	0	8.14198170709568						707	35	5	NaN	NaN	NaN	0.0013493	1	15175	83.775	65.267	1	194480			16662	1728	14038	14442	16662	16662		
QPCPSESDIITEEDK	15	Unmodified	_QPCPSESDIITEEDK_			0	0	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.388181	1746.76181	3.1036	0.0027138	-2.2657	-0.0019811	0.83791	0.00073266	874.385996292589	7.3231	0.23939	7.3231	7.2255	7.4649	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	440.822101186609	0	9.70914303292301						353	28	3	NaN	NaN	NaN	0.0046998	1	25788	51.454	43.896	1	72274			16663	336	14039	14443	16663	16663		
QPCPSESDIITEEDK	15	Unmodified	_QPCPSESDIITEEDK_			0	0	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.388181	1746.76181	2.9644	0.002592	-1.2975	-0.0011345	1.6669	0.0014575	874.888606608616	7.3142	0.23054	7.3142	7.2343	7.4649	0	297	37	1.12600091227925	0.0239912663055373	1.12600091227925	454.558732457207	0	9.68510725254527						515	27	3	NaN	NaN	NaN	0.00013567	1	25789	97.594	92.098	1	119060			16664	336	14039	14443	16664	16664		
QPDELLDSMSDWCK	14	Unmodified	_QPDELLDSMSDWCK_			0	0	0	Q9Y3B8	Q9Y3B8	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.368737	1722.72292	1.9504	0.001682	0.33681	0.00029046	2.2872	0.0019724	862.369267671696	14.905	0.079797	14.905	14.87	14.95	0	345	37	1.09397730668811	0.024044179420704	1.09397730668811	441.679540705341	0	9.70753420409022						252	10	4	NaN	NaN	NaN	0.01416	1	25118	50.116	48.406	1	65033			16665	3381	14040	14444	16665	16665		
QPEDDLFDRLNTGILNK	17	Unmodified	_QPEDDLFDRLNTGILNK_			0	0	1	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.340966	1987.00107	-0.96616	-0.00064089	0.63064	0.00041833	-0.33551	-0.00022256	663.675609461834	14.843	0.070939	14.843	14.817	14.888	0	621	82	0.908462957275599	0.0548487313487285	0.908462957275599	549.584283699555	0	33.1813207007576						481	9	4	NaN	NaN	NaN	0.001668	1	31392	44.045	37.189	1	92899			16666	651	14041	14445	16666	16666		
QPETVLTETPQDTIELNR	18	Unmodified	_QPETVLTETPQDTIELNR_			0	0	0	P30260	P30260	P30260	CDC27	Cell division cycle protein 27 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.52894	2083.04333	0.96023	0.0010011	-1.0881	-0.0011343	-0.12782	-0.00013326	1043.02906495432	12.148	0.07981	12.148	12.121	12.201	0	162	28	1.21569043230068	0.0178837612372205	1.21569043230068	490.141405770324	0	7.21036510642199						88	10	2	NaN	NaN	NaN	0.055726	1	33071	13.345	12.329	1	18228			16667	907	14042	14446	16667	16667		
QPGNETADTVLK	12	Unmodified	_QPGNETADTVLK_			0	0	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.825149	1271.63574	2.65	0.0016876	-1.3078	-0.00083285	1.3422	0.00085472	636.824357228834	5.1149	0.25716	5.1149	5.044	5.3012	0	546	64	0.959108205975751	0.042471368758535	0.959108205975751	388.322256598254	0	17.1957425182825						705	30	5	NaN	NaN	NaN	0.0066646	1	11539	64.906	37.959	1	277250			16668	1349	14043	14447	16668	16668		
QPLLEACDTLR	11	Unmodified	_QPLLEACDTLR_			0	0	0	Q9HA77	Q9HA77	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.337369	1314.66019	0.58702	0.00038646	9.7062	0.00639	10.293	0.0067764	658.345253243475	9.4874	0.16848	9.4874	9.4253	9.5938	0	495	22	0.993446994398923	0.0141238631290448	0.993446994398923	402.08379078355	0	5.71643626630561						140	20	3	NaN	NaN	NaN	0.045438	1	12798	43.168	36.018	1	44095			16669	2943	14044	14448	16669	16669		
QPLSEASNQQPLSGGEEK	18	Unmodified	_QPLSEASNQQPLSGGEEK_			0	0	0	Q9NQW6	Q9NQW6	Q9NQW6	ANLN	Actin-binding protein anillin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.958151	1897.90175	2.854	0.0027112	-1.4258	-0.0013545	1.4282	0.0013567	949.957238602756	5.7534	0.062079	5.7534	5.7179	5.78	0	315	28	1.11400032671325	0.0180045964949538	1.11400032671325	449.432070350752	0	7.26377083068832						97	8	2	NaN	NaN	NaN	0.00075169	1	29558	43.177	39.889	1	19811			16670	3004	14045	14449	16670	16670		
QPPVSPGTALVGSQK	15	Unmodified	_QPPVSPGTALVGSQK_			0	0	0	P17096	P17096	P17096	HMGA1	High mobility group protein HMG-I/HMG-Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.404098	1464.79364	2.47	0.0018115	-1.0079	-0.00073917	1.4621	0.0010723	733.403584885407	7.3142	0.266	7.3142	7.2255	7.4915	0	420	55	1.04379886199097	0.0361908186814239	1.04379886199097	422.012402945067	0	14.632104816789						914	31	4	NaN	NaN	NaN	0.00021688	1	17423	72.327	34.736	1	474070			16671	735	14046	14450	16671	16671		
QPQVAELLAEAR	12	Unmodified	_QPQVAELLAEAR_			0	0	0	P51570	P51570	P51570	GALK1	Galactokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.864608	1323.71466	0.81713	0.00054165	-0.93246	-0.00061809	-0.11532	-7.6445E-05	662.863953500172	12.635	0.15072	12.635	12.582	12.733	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.504279367464	0	8.16180817424015						266	18	3	NaN	NaN	NaN	6.8149E-05	1	13104	94.66	79.897	1	74649			16672	1189	14047	14451	16672	16672		
QPVLSQTEAR	10	Unmodified	_QPVLSQTEAR_			0	0	0	P28070	P28070	P28070	PSMB4	Proteasome subunit beta type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.80402	1127.59349	3.0223	0.001707	-0.15317	-8.6512E-05	2.8691	0.0016205	564.803401108224	3.9002	0.30147	3.9002	3.8381	4.1396	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	375.721610490112	0	9.86075241918769						401	35	2	NaN	NaN	NaN	0.0048669	1	7461	81.163	51.853	1	190880			16673	873	14048	14452	16673	16673		
QPYAVSELAGHQTSAESWGTGR	22	Unmodified	_QPYAVSELAGHQTSAESWGTGR_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1166.55127	2331.08799	1.591	0.001856	-0.87761	-0.0010238	0.71336	0.00083217	1167.05141181482	9.7356	0.053189	9.7356	9.709	9.7622	0	63	49	1.28111162701928	0.0316607365806079	1.28111162701928	516.153756569826	0	12.7559595722899						267	7	4	NaN	NaN	NaN	0.028834	1	35904	37.769	31.088	1	48152			16674	988	14049	14453	16674	16674		
QPYAVSELAGHQTSAESWGTGR	22	Unmodified	_QPYAVSELAGHQTSAESWGTGR_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.036605	2331.08799	1.9653	0.0015291	-0.55491	-0.00043174	1.4104	0.0010974	778.370721591452	9.7356	0.17732	9.7356	9.6824	9.8598	0	561	139	0.948993180460448	0.0930906818033946	0.948993180460448	573.51576140254	0	56.2585425830471						1369	21	6	NaN	NaN	NaN	2.8398E-12	1	35905	173.15	146.47	1	732840			16675	988	14049	14453	16675	16675		
QQAGAQGPGSADLEDGEMGK	20	Unmodified	_QQAGAQGPGSADLEDGEMGK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.431443	1944.84833	2.8293	0.0027541	-3.8639	-0.0037613	-1.0346	-0.0010071	973.426468074904	6.2057	0.044337	6.2057	6.1791	6.2234	0	285	40	1.13399579921816	0.0259708783379724	1.13399579921816	457.418890591897	0	10.4758504090076						140	6	3	NaN	NaN	NaN	0.00087534	1	30615	61.067	60.547	1	23570			16676	2819	14050	14454	16676	16676		
QQALEVIK	8	Unmodified	_QQALEVIK_			0	0	0	Q9Y3A5	Q9Y3A5	Q9Y3A5	SBDS	Ribosome maturation protein SBDS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.776742	927.538931	0.65693	0.00030533	0.94343	0.00043849	1.6004	0.00074381	464.777165528392	6.1347	0.15072	6.1347	6.0904	6.2411	0	669	37	0.875957769340875	0.0244059657771015	0.875957769340875	356.066327110562	0	9.92073236633047						288	18	3	NaN	NaN	NaN	0.0055091	1	2837	84.368	39.601	1	83797			16677	3376	14051	14455	16677	16677		
QQALTVSTDPEHR	13	Unmodified	_QQALTVSTDPEHR_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.370786	1480.72702	2.2492	0.0016675	-0.88013	-0.0006525	1.369	0.001015	741.370019871316	4.5918	0.070909	4.5918	4.5652	4.6361	0	408	31	1.0518390438467	0.0200976833254141	1.0518390438467	425.220260622135	0	8.12476223575061						100	9	2	NaN	NaN	NaN	0.00010896	1	17922	72.846	67.35	1	24062			16678	973	14052	14456	16678	16678		
QQDVFMFLTNR	11	Unmodified	_QQDVFMFLTNR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.845361	1397.67617	0.40657	0.00028454	-0.028257	-1.9776E-05	0.37832	0.00026476	699.845752366912	15.845	0.17735	15.845	15.766	15.943	0	489	40	0.997481546940468	0.0262191597817407	0.997481546940468	403.467269482602	0	10.6052817094353						364	21	3	NaN	NaN	NaN	3.1441E-05	1	15370	104.39	94.88	1	108440			16679	1531	14053	14457	16679	16679		
QQDVIYELIQTELHHVR	17	Unmodified	_QQDVIYELIQTELHHVR_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	531.032639	2120.10145	-2.1634	-0.0011488	0.53609	0.00028468	-1.6273	-0.00086417	531.283533245902	17.486	0.053196	17.486	17.459	17.513	0	762	13	0.812773098473386	0.00817043897500369	0.812773098473386	655.306905765259	0	6.58750282644701						76	7	3	NaN	NaN	NaN	1.1436E-06	1	33626	85.813	85.741	1	12995			16680	2449	14054	14458	16680	16680		
QQEAALELEELK	12	Unmodified	_QQEAALELEELK_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.867014	1399.71947	1.8416	0.0012907	-1.4943	-0.0010473	0.3473	0.00024341	700.866208970399	10.888	0.20397	10.888	10.826	11.03	0	459	31	1.01763759082241	0.0201393435247932	1.01763759082241	411.614225315361	0	8.14596508430708						457	24	4	NaN	NaN	NaN	0.0029062	1	15445	66.664	53.39	1	135330			16681	1554	14055	14459	16681	16681		
QQEELLAEENQR	12	Unmodified	_QQEELLAEENQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.860251	1485.70595	1.8848	0.001402	-0.19526	-0.00014525	1.6896	0.0012568	743.860411575033	5.7978	0.21279	5.7978	5.7445	5.9573	0	471	46	1.00957851518677	0.0302319815976242	1.00957851518677	408.123199770001	0	12.2213110515011						503	25	4	NaN	NaN	NaN	0.00056314	1	18086	99.174	78.024	1	129290			16682	1816	14056	14460	16682	16682		
QQEIILWR	8	Unmodified	_QQEIILWR_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.308741	1084.60293	-0.41427	-0.00022508	0.17725	9.6303E-05	-0.23702	-0.00012878	543.308580480652	11.89	0.1419	11.89	11.828	11.97	0	627	28	0.90440375274676	0.0182676885200254	0.90440375274676	366.851180306103	0	7.40987979614465						324	17	4	NaN	NaN	NaN	0.0036637	1	6330	81.32	49.193	1	95456			16683	334	14057	14461	16683	16683		
QQELDNLLHEK	11	Unmodified	_QQELDNLLHEK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.236891	1365.68884	-1.2061	-0.00055025	-0.9396	-0.00042868	-2.1457	-0.00097893	456.236554488392	8.3608	0.14192	8.3608	8.3164	8.4584	0	822	22	0.771863999559055	0.0143371313465699	0.771863999559055	468.416198405906	0	8.7006837541885						235	17	3	NaN	NaN	NaN	0.03273	1	14366	28.647	13.065	1	70873			16684	1594	14058	14462	16684	16684		
QQELDNLLHEK	11	Unmodified	_QQELDNLLHEK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.851698	1365.68884	1.6033	0.0010964	1.5269	0.0010442	3.1302	0.0021406	683.853098602121	8.3697	0.097585	8.3697	8.3164	8.414	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	412.529385221485	0	8.147950222757						203	12	3	NaN	NaN	NaN	0.00077909	1	14368	65.933	44.844	1	57015			16685	1594	14058	14462	16685	16685		
QQELLSAHTDFCNR	14	Unmodified	_QQELLSAHTDFCNR_			0	0	0	Q86UK7	Q86UK7	Q86UK7	ZNF598	Zinc finger protein 598	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.899385	1717.78422	2.6003	0.002236	-1.0097	-0.00086822	1.5907	0.0013678	860.399758445315	7.456	0.062078	7.456	7.4205	7.4826	0	273	19	1.14198628764525	0.0119824360817313	1.14198628764525	461.073146759686	0	4.83786851893183						82	8	3	NaN	NaN	NaN	0.057903	1	24987	17.415	15.704	1	13773			16686	2166	14059	14463	16686	16686		
QQEPLGEDCPSELR	14	Unmodified	_QQEPLGEDCPSELR_			0	0	0	Q8NB16	Q8NB16	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.377951	1656.74135	2.632	0.0021829	-2.2448	-0.0018618	0.3872	0.00032114	829.376596694959	7.1811	0.12413	7.1811	7.128	7.2521	0	393	52	1.0618830335572	0.034140156185883	1.0618830335572	428.858149979865	0	13.7880385684802						358	15	3	NaN	NaN	NaN	0.00020726	1	23234	58.313	49.507	1	80439			16687	2281	14060	14464	16687	16687		
QQEQQVPILEK	11	Unmodified	_QQEQQVPILEK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.364441	1338.71433	1.4655	0.00098241	0.091325	6.1221E-05	1.5568	0.0010436	670.365416208162	7.4383	0.23941	7.4383	7.3142	7.5536	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.742080471201	0	8.16876474462606						346	28	3	NaN	NaN	NaN	0.0040124	1	13565	76.85	52.029	1	93764			16688	1127	14061	14465	16688	16688		
QQEVETELK	9	Unmodified	_QQEVETELK_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.282586	1102.55062	1.8785	0.0010374	-1.167	-0.00064451	0.71146	0.00039293	552.283283534513	4.0953	0.3281	4.0953	4.0243	4.3524	0	612	85	0.914549654013882	0.0568683358521173	0.914549654013882	370.890891470313	0	23.0626600623095						780	38	4	NaN	NaN	NaN	0.009572	1	6782	58.916	36.529	1	205670			16689	586	14062	14466	16689	16689		
QQFEGYGLEIPDILNASNLK	20	Unmodified	_QQFEGYGLEIPDILNASNLK_			0	0	0	Q96EY4	Q96EY4	Q96EY4	TMA16	Translation machinery-associated protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1125.07606	2248.13756	0.48505	0.00054571	-0.87619	-0.00098578	-0.39114	-0.00044007	1125.57647087167	19.011	0.070919	19.011	18.976	19.046	0	96	43	1.2593374219024	0.0277297116333894	1.2593374219024	507.491979491166	0	11.1746113494266						224	9	3	NaN	NaN	NaN	0.06155	1	35170	26.21	25.399	1	36128			16690	2521	14063	14467	16690	16690		
QQFTEEEIYK	10	Unmodified	_QQFTEEEIYK_			0	0	0	Q8N7H5	Q8N7H5	Q8N7H5	PAF1	RNA polymerase II-associated factor 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.81425	1313.61395	1.4268	0.00093859	3.9047	0.0025686	5.3315	0.0035072	657.816752590938	7.4028	0.12411	7.4028	7.3496	7.4738	0	510	34	0.983355730988811	0.0222161383936255	0.983355730988811	398.002813748577	0	8.99174664126843						236	15	4	NaN	NaN	NaN	0.043227	1	12755	40.386	30.872	1	58769			16691	2269	14064	14468	16691	16691		
QQGASGEVYCPSGEK	15	Unmodified	_QQGASGEVYCPSGEK_			0	0	0	Q7Z5L9	Q7Z5L9	Q7Z5L9	IRF2BP2	Interferon regulatory factor 2-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.851569	1595.68859	3.0659	0.0024492	-2.3244	-0.0018568	0.74158	0.00059241	798.84941497967	3.8292	0.08867	3.8292	3.7849	3.8736	0	459	31	1.01763759082241	0.0201393435247932	1.01763759082241	411.119325111125	0	8.13617086550715						99	11	2	NaN	NaN	NaN	0.0059218	1	21442	47.57	47.28	1	18627			16692	2146	14065	14469	16692	16692		
QQGLASYDYVR	11	Unmodified	_QQGLASYDYVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.320034	1298.62551	1.9806	0.001288	1.5817	0.0010286	3.5622	0.0023166	650.320958658977	7.802	0.20399	7.802	7.7221	7.9261	0	507	37	0.985374541851584	0.0242274096445863	0.985374541851584	398.867822987447	0	9.80696550511931						447	24	4	NaN	NaN	NaN	4.3108E-05	1	12309	104.39	97.704	1	109570			16693	1816	14066	14470	16693	16693		
QQHVIETLIGK	11	Unmodified	_QQHVIETLIGK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	422.578588	1264.71394	-1.2719	-0.00053747	0.53466	0.00022593	-0.73723	-0.00031154	422.578838317036	7.9704	0.11529	7.9704	7.935	8.0502	0	780	52	0.800512323802183	0.034741288932732	0.800512323802183	486.189695940463	0	21.1000583008622						224	14	2	NaN	NaN	NaN	0.047493	1	11359	24.121	21.754	1	116520			16694	1113	14067	14471	16694	16694		
QQHVIETLIGK	11	Unmodified	_QQHVIETLIGK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.364244	1264.71394	1.8006	0.0011404	-0.50355	-0.00031893	1.2971	0.00082151	633.364044055902	7.9704	0.15096	7.9704	7.9261	8.077	0	543	34	0.961130371139249	0.0222438199941358	0.961130371139249	389.163864961559	0	9.00657311470286						417	18	4	NaN	NaN	NaN	0.00036518	1	11360	85.622	75.534	1	227880			16695	1113	14067	14471	16695	16695		
QQIAEIEK	8	Unmodified	_QQIAEIEK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.763832	957.513111	1.1824	0.00056728	2.0589	0.00098781	3.2414	0.0015551	479.764825423573	4.1396	0.17732	4.1396	4.1041	4.2815	0	669	31	0.875957769340875	0.0203383037367069	0.875957769340875	355.903584492553	0	8.26349791707304						211	21	2	NaN	NaN	NaN	0.029936	1	3385	45.489	23.103	1	50185			16696	2064	14068	14472	16696	16696		
QQIESEVANLK	11	Unmodified	_QQIESEVANLK_			0	0	0	Q9UBW8	Q9UBW8	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.835517	1257.65648	2.2995	0.0014483	0.45727	0.000288	2.7568	0.0017363	629.835505586455	7.6688	0.16854	7.6688	7.5979	7.7664	0	513	34	0.981336640919867	0.0222192115744939	0.981336640919867	397.369507577012	0	8.99715428319274						153	20	2	NaN	NaN	NaN	0.004159	1	11147	47.561	24.508	1	31892			16697	3193	14069	14473	16697	16697		
QQILHSEEFLSFFDHSTR	18	Unmodified	_QQILHSEEFLSFFDHSTR_			0	0	0	Q13409	Q13409	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	556.022272	2220.05998	-0.21436	-0.00011919	1.6023	0.00089089	1.3879	0.0007717	556.274513637141	15.074	0.097526	15.074	15.03	15.127	0	648	43	0.890187667287968	0.0284380921957725	0.890187667287968	717.513248080856	0	22.921804750201						256	12	4	NaN	NaN	NaN	0.025801	1	34890	39.166	35.725	1	75003			16698	1661	14070	14474	16698	16698		
QQIQNDLNQWK	11	Unmodified	_QQIQNDLNQWK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.857315	1413.70008	1.9039	0.0013477	-0.26174	-0.00018528	1.6422	0.0011624	707.857063531133	8.4229	0.15076	8.4229	8.3697	8.5205	0	474	43	1.00756305028564	0.0282223642455827	1.00756305028564	407.499839395541	0	11.4142821078811						273	18	2	NaN	NaN	NaN	0.057694	1	15874	44.82	30.365	1	138770			16699	718	14071	14475	16699	16699		
QQLGAAQILQSDLLPILTQHHQDK	24	Unmodified	_QQLGAAQILQSDLLPILTQHHQDK_			0	0	0	Q9UNS1	Q9UNS1	Q9UNS1	TIMELESS	Protein timeless homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	674.618605	2694.44531	-0.79118	-0.00053374	0.57974	0.0003911	-0.21144	-0.00014264	674.869387266613	17.672	0.06205	17.672	17.646	17.708	0	660	13	0.882057989648486	0.00813193414764157	0.882057989648486	710.182775419777	0	6.54736948168727						65	8	3	NaN	NaN	NaN	0.038809	1	37592	9.1553	8.6787	1	10893			16700	3305	14072	14476	16700	16700		
QQLLIGAYAK	10	Unmodified	_QQLLIGAYAK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.824224	1103.63389	0.47554	0.00026289	1.2879	0.000712	1.7635	0.00097489	552.824930268544	9.3189	0.18626	9.3189	9.2568	9.443	0	588	31	0.93076847747433	0.0202622968311691	0.93076847747433	377.463766398685	0	8.21717007277158						328	22	3	NaN	NaN	NaN	0.0042814	1	6827	77.072	43.676	1	111210			16701	2679	14073	14477	16701	16701		
QQLQQAEEALVAK	13	Unmodified	_QQLQQAEEALVAK_			0	0	0	Q9Y6K9	Q9Y6K9	Q9Y6K9	IKBKG	NF-kappa-B essential modulator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.39373	1454.77291	2.2306	0.0016247	-0.58616	-0.00042696	1.6444	0.0011978	728.3932936554	8.9021	0.097653	8.9021	8.8487	8.9464	0	342	37	1.09598084995137	0.024044179420704	1.09598084995137	443.138364338995	0	9.72179243901655						222	12	3	NaN	NaN	NaN	0.00013889	1	17101	94.66	78.78	1	52753			16702	3469	14074	14478	16702	16702		
QQLSAEELDAQLDAYNAR	18	Unmodified	_QQLSAEELDAQLDAYNAR_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.98998	2033.96541	2.5258	0.0025712	-0.10906	-0.00011103	2.4167	0.0024602	1018.49205877615	12.751	0.33699	12.751	12.662	12.999	0	180	73	1.203763835057	0.047752276464526	1.203763835057	485.410386061834	0	19.2558127092092						1166	39	6	NaN	NaN	NaN	4.2187E-57	1	32223	272.81	235.86	1	603900			16703	2172	14075	14479	16703	16703		
QQLSAEELDAQLDAYNAR	18	Unmodified	_QQLSAEELDAQLDAYNAR_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.995747	2033.96541	1.3628	0.00092535	1.3615	0.00092447	2.7243	0.0018498	679.331811543002	12.76	0.12416	12.76	12.724	12.848	0	501	31	0.98941132619024	0.0201839240087274	0.98941132619024	598.459062373515	0	12.2085243189935						216	15	4	NaN	NaN	NaN	7.7266E-05	1	32224	102.57	76.979	1	55279			16704	2172	14075	14479	16704	16704		
QQLVASHLEK	10	Unmodified	_QQLVASHLEK_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.822212	1151.62987	2.5759	0.0014859	-1.5438	-0.00089047	1.0322	0.00059538	576.821528397697	3.8026	0.13302	3.8026	3.776	3.909	0	552	31	0.955063035883597	0.0202314531592178	0.955063035883597	387.117050903886	0	8.20044351863186						216	16	3	NaN	NaN	NaN	7.4057E-06	1	8117	99.855	74.601	1	61490			16705	1684	14076	14480	16705	16705		
QQLVELVAEQADLEQTFNPSDPDCVDR	27	Unmodified	_QQLVELVAEQADLEQTFNPSDPDCVDR_			0	0	0	Q9BZZ5	Q9BZZ5	Q9BZZ5	API5	Apoptosis inhibitor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1039.48742	3115.44042	0.6982	0.00072577	0.82138	0.00085381	1.5196	0.0015796	1039.82288045836	18.009	0.10642	18.009	17.965	18.071	0	405	43	1.05384839605172	0.0281173586506349	1.05384839605172	635.933513090338	0	16.9671185461877						292	13	5	NaN	NaN	NaN	2.4981E-07	1	38380	61.003	60.268	1	52066			16706	2816	14077	14481	16706	16706		
QQMAEEMVEAAGEDER	16	Unmodified	_QQMAEEMVEAAGEDER_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.88274	1821.75093	2.9581	0.0026975	-1.8059	-0.0016468	1.1522	0.0010507	911.881238462915	9.8154	0.062053	9.8154	9.7889	9.8509	0	336	31	1.09998710857178	0.0200285363602049	1.09998710857178	443.913183627237	0	8.08275957942493						158	8	3	NaN	NaN	NaN	9.1399E-07	1	27758	84.102	83.363	1	31473			16707	1841	14078	14482	16707	16707		
QQMEEQVAQK	10	Unmodified	_QQMEEQVAQK_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.792795	1217.57104	2.0415	0.0012449	-1.3707	-0.00083587	0.67078	0.00040904	610.292718393832	2.774	0.14191	2.774	2.7208	2.8627	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	372.922572023877	0	7.39254378459361						201	17	3	NaN	NaN	NaN	0.037728	1	9945	34.781	10.66	1	34133			16708	3209	14079	14483	16708	16708		
QQMENYPK	8	Unmodified	_QQMENYPK_			0	0	0	P08962	P08962	P08962	CD63	CD63 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.239667	1036.46478	1.4753	0.00076605	0.31856	0.00016541	1.7939	0.00093147	519.239879615961	2.9424	0.15962	2.9424	2.8981	3.0577	0	675	67	0.871889544407995	0.0447940149078141	0.871889544407995	353.86846590038	0	18.180272304687						374	19	3	NaN	NaN	NaN	0.011207	1	5140	72.492	60.425	1	111940			16709	593	14080	14484	16709	16709		
QQMLEQHLQDVR	12	Unmodified	_QQMLEQHLQDVR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.92443	1523.75146	-0.4698	-0.0002391	1.1402	0.00058026	0.67037	0.00034117	508.925263906239	6.5161	0.088666	6.5161	6.4895	6.5781	0	723	28	0.839303037468863	0.0183490160938558	0.839303037468863	508.813415885224	0	11.1237838302164						161	11	3	NaN	NaN	NaN	0.0098676	1	19233	37.749	33.767	1	42179			16710	1020	14081	14485	16710	16710		
QQMLEQHLQDVR	12	Unmodified	_QQMLEQHLQDVR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.883007	1523.75146	2.2119	0.0016875	0.97809	0.00074616	3.19	0.0024336	762.884496605726	6.5249	0.17734	6.5249	6.4895	6.6668	0	423	82	1.04178812298108	0.0542375898478167	1.04178812298108	421.046910863485	0	21.9205509780214						322	21	2	NaN	NaN	NaN	1.0305E-05	1	19234	96.946	83.771	1	98180			16711	1020	14081	14485	16711	16711		
QQMQDFFLAHK	11	Unmodified	_QQMQDFFLAHK_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.895812	1391.66561	-1.2549	-0.0005834	-1.5928	-0.00074047	-2.8477	-0.0013239	464.895060937035	10.073	0.13301	10.073	10.028	10.161	0	831	28	0.76571780291124	0.0184411604837688	0.76571780291124	464.599495220892	0	11.1891793810619						314	16	4	NaN	NaN	NaN	0.0038715	1	15191	39.01	31.859	1	107680			16712	2786	14082	14486	16712	16712		
QQNELAELHANLAR	14	Unmodified	_QQNELAELHANLAR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.281382	1605.82232	-0.021652	-1.1612E-05	-1.1222	-0.00060179	-1.1438	-0.0006134	536.280775218334	8.7422	0.12427	8.7422	8.6979	8.8221	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	515.989415371156	0	12.3446417538216						268	15	4	NaN	NaN	NaN	0.0018236	1	21779	39.293	31.292	1	71473			16713	1782	14083	14487	16713	16713		
QQNQEITDQLEEEK	14	Unmodified	_QQNQEITDQLEEEK_			0	0	0	Q08379	Q08379	Q08379	GOLGA2	Golgin subfamily A member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.40522	1730.79589	2.8372	0.0024582	-0.57103	-0.00049474	2.2662	0.0019635	866.403264704	6.9417	0.12416	6.9417	6.8885	7.0126	0	363	43	1.08195024817156	0.0280670092920567	1.08195024817156	436.807507245454	0	11.3312792204788						300	15	4	NaN	NaN	NaN	9.4204E-08	1	25340	130.99	121.73	1	62556			16714	1577	14084	14488	16714	16714		
QQNQELQEQLR	11	Unmodified	_QQNQELQEQLR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.357679	1412.7008	2.6132	0.0018484	-1.9473	-0.0013775	0.66583	0.00047098	707.356100194689	5.0529	0.15958	5.0529	5.0174	5.177	0	519	28	0.97729762293174	0.0181793540549698	0.97729762293174	395.261973809659	0	7.35252721151238						234	19	3	NaN	NaN	NaN	5.2252E-05	1	15848	78.932	75.324	1	70560			16715	1782	14085	14489	16715	16715		
QQPDTELEIQQK	12	Unmodified	_QQPDTELEIQQK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.867545	1455.72054	1.9194	0.001399	-6.8929	-0.005024	-4.9736	-0.0036251	728.862656322571	6.1879	0.22168	6.1879	6.0461	6.2678	0	468	43	1.01159370163332	0.0282106679353067	1.01159370163332	409.015591822701	0	11.4063610940271						267	26	2	NaN	NaN	NaN	0.070478	1	17122	29.317	23.821	1	75745			16716	3037	14086	14490	16716	16716		
QQPLFVSGGDDYK	13	Unmodified	_QQPLFVSGGDDYK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.351531	1452.68851	1.718	0.0012496	-0.60275	-0.00043841	1.1152	0.00081116	727.351342442254	8.5825	0.17735	8.5825	8.4938	8.6712	0	468	64	1.01159370163332	0.0422897180004469	1.01159370163332	409.023604407075	0	17.0992492914625						616	21	4	NaN	NaN	NaN	0.0071051	1	17045	67.548	46.46	1	224420			16717	1241	14087	14491	16717	16717		
QQPPAVQFVPPLPEWK	16	Unmodified	_QQPPAVQFVPPLPEWK_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.003979	1859.99341	0.57529	0.0005356	-1.1765	-0.0010953	-0.60118	-0.0005597	931.50493517098	16.901	0.16852	16.901	16.821	16.989	0	258	49	1.15196821829984	0.0319355989061636	1.15196821829984	464.818564345994	0	12.8859971996457						429	20	3	NaN	NaN	NaN	0.0036662	1	28703	63.908	61.014	1	98424			16718	257	14088	14492	16718	16718		
QQPPEPEWIGDGESTSPSDK	20	Unmodified	_QQPPEPEWIGDGESTSPSDK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.49001	2182.96547	1.336	0.0014596	0.11535	0.00012602	1.4513	0.0015856	1092.99167513088	9.4608	0.13301	9.4608	9.4164	9.5494	0	183	52	1.20177511391933	0.0337989921039494	1.20177511391933	484.384130904612	0	13.6229276393738						470	16	3	NaN	NaN	NaN	0.00085281	1	34488	46.206	45.771	1	88591			16719	2308	14089	14493	16719	16719		
QQQEELEAEHGTGDK	15	Unmodified	_QQQEELEAEHGTGDK_			0	0	0	Q13895	Q13895	Q13895	BYSL	Bystin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.9237	1697.74927	0.82768	0.00046923	1.8751	0.001063	2.7028	0.0015323	567.259472373311	2.6232	0.10642	2.6232	2.6055	2.7119	0	723	22	0.839303037468863	0.0142734399244295	0.839303037468863	508.344252544779	0	8.64505527289492						114	13	2	NaN	NaN	NaN	0.0028006	1	24421	39.702	35.72	1	27652			16720	1709	14090	14494	16720	16720		
QQQEGLSHLISIIK	14	Unmodified	_QQQEGLSHLISIIK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.970145	1592.88861	-0.41882	-0.0002228	-0.08065	-4.2903E-05	-0.49947	-0.0002657	531.970246089016	13.513	0.088678	13.513	13.487	13.575	0	717	28	0.84338031290707	0.0183439172239627	0.84338031290707	511.085621967311	0	11.1163518999037						143	11	3	NaN	NaN	NaN	0.0037072	1	21368	43.306	38.477	1	29946			16721	2131	14091	14495	16721	16721		
QQQEGLSHLISIIK	14	Unmodified	_QQQEGLSHLISIIK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.451579	1592.88861	1.9816	0.0015802	0.40631	0.00032401	2.3879	0.0019042	797.452246131265	13.522	0.070945	13.522	13.487	13.558	0	306	25	1.12000185836644	0.0159985790763961	1.12000185836644	452.480692567813	0	6.46342511533595						132	9	3	NaN	NaN	NaN	6.8233E-06	1	21369	101.64	94.503	1	24303			16722	2131	14091	14495	16722	16722		
QQQFENLDQQLR	12	Unmodified	_QQQFENLDQQLR_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.884061	1545.75357	1.8564	0.0014367	-1.1726	-0.00090749	0.68378	0.00052917	773.883391511	8.8931	0.17749	8.8931	8.8221	8.9996	0	444	34	1.02770517576159	0.022139515615524	1.02770517576159	415.301954841137	0	8.94671383507358						344	21	4	NaN	NaN	NaN	1.4472E-07	1	19912	126.29	114.34	1	105830			16723	278	14092	14496	16723	16723		
QQSEEDLLLQDFSR	14	Unmodified	_QQSEEDLLLQDFSR_			0	0	0	Q9UNL2	Q9UNL2	Q9UNL2	SSR3	Translocon-associated protein subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.412848	1706.81114	1.5168	0.0012959	-2.8899	-0.0024692	-1.3732	-0.0011733	854.407827242838	14.737	0.23945	14.737	14.693	14.932	1.7764E-15	360	82	1.08395544855938	0.0540882631408484	1.08395544855938	437.665916738609	0	21.8390795523932						901	28	5	NaN	NaN	NaN	4.0381E-33	1	24676	230.23	205.54	1	386950			16724	3299	14093	14497	16724	16724		
QQSHFAMMHGGTGFAGIDSSSPEVK	25	Unmodified	_QQSHFAMMHGGTGFAGIDSSSPEVK_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	869.396928	2605.16896	1.3164	0.0011445	1.7607	0.0015308	3.0772	0.0026753	869.732779919529	9.5051	0.079781	9.5051	9.4785	9.5583	0	480	61	1.00353128488872	0.0403232450077355	1.00353128488872	606.097356309372	0	24.3538119488857						428	10	5	NaN	NaN	NaN	0.00044438	1	37258	60.14	57.954	1	88515			16725	1833	14094	14498	16725	16725		
QQSHFAMMHGGTGFAGIDSSSPEVK	25	Unmodified	_QQSHFAMMHGGTGFAGIDSSSPEVK_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	652.299515	2605.16896	1.0202	0.00066547	2.5554	0.0016669	3.5756	0.0023323	652.55155411529	9.514	0.097521	9.514	9.4785	9.576	0	528	43	0.971237000454584	0.028292695105214	0.971237000454584	782.122062048386	0	22.7836676591184						315	12	6	NaN	NaN	NaN	0.042817	1	37259	32.862	32.648	1	96566			16726	1833	14094	14498	16726	16726		
QQTDIAVNWAGGLHHAK	17	Unmodified	_QQTDIAVNWAGGLHHAK_			0	0	0	Q13547	Q13547	Q13547	HDAC1	Histone deacetylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.471366	1844.92818	2.272	0.0020981	-1.871	-0.0017278	0.40101	0.00037032	923.470540121882	7.864	0.053204	7.864	7.8374	7.8906	0	207	22	1.18585551256002	0.0139382611117842	1.18585551256002	478.520995741445	0	5.62442094797586						70	7	2	NaN	NaN	NaN	0.0026121	1	28358	50.116	43.26	1	14617			16727	1682	14095	14499	16727	16727		
QQTDIAVNWAGGLHHAK	17	Unmodified	_QQTDIAVNWAGGLHHAK_			0	0	0	Q13547	Q13547	Q13547	HDAC1	Histone deacetylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.983336	1844.92818	1.4989	0.00092327	0.32058	0.00019747	1.8194	0.0011207	616.318055609363	7.8729	0.13302	7.8729	7.7842	7.9172	0	567	40	0.944945209309785	0.0263209282177764	0.944945209309785	571.959571435404	0	15.9316187593752						248	16	3	NaN	NaN	NaN	0.01244	1	28360	46.068	42.563	1	64320			16728	1682	14095	14499	16728	16728		
QQTIILDDELIQWK	14	Unmodified	_QQTIILDDELIQWK_			0	0	0	P42229;P51692	P42229;P51692	P42229	STAT5A;STAT5B	Signal transducer and activator of transcription 5A;Signal transducer and activator of transcription 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.969802	1741.92505	1.3668	0.0011918	-0.84458	-0.00073645	0.5222	0.00045534	871.969040344104	16.599	0.088663	16.599	16.564	16.652	0	291	25	1.12999890578964	0.0159919751771491	1.12999890578964	456.182666488958	0	6.45599021499868						164	11	3	NaN	NaN	NaN	0.036196	1	25660	45.939	22.983	1	40355			16729	1046;1197	14096	14500	16729	16729		
QQTLEAEEAK	10	Unmodified	_QQTLEAEEAK_			0	0	0	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.785492	1145.55643	1.4208	0.00081526	-4.809	-0.0027593	-3.3881	-0.0019441	573.781806219137	2.9424	0.17734	2.9424	2.8804	3.0577	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	367.429032876881	0	6.58170603294093						161	21	2	NaN	NaN	NaN	0.052154	1	7938	34.781	27.134	1	36508			16730	1897	14097	14501	16730	16730		
QQTPPGLCPLAGNSVHEDK	19	Unmodified	_QQTPPGLCPLAGNSVHEDK_			0	0	0	Q9Y3B8	Q9Y3B8	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.333706	2046.97929	2.2727	0.001553	0.051961	3.5507E-05	2.3247	0.0015885	683.668199956896	7.3585	0.20394	7.3585	7.3053	7.5092	0	429	28	1.03776581230406	0.0181041477634616	1.03776581230406	627.679915316819	0	10.95007158679						398	24	4	NaN	NaN	NaN	0.0015291	1	32479	56.08	55.138	1	118670			16731	3381	14098	14502	16731	16731		
QQTQHAVEGDCDIHVLK	17	Unmodified	_QQTQHAVEGDCDIHVLK_			0	0	0	CON__P12763	CON__P12763	CON__P12763			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.986418	1976.93742	1.2799	0.00084474	0.77464	0.00051125	2.0546	0.001356	660.32059278731	5.2125	0.088665	5.2125	5.177	5.2657	0	570	25	0.942920803299286	0.0161941280103991	0.942920803299286	570.450045228248	0	9.79715478080504						145	11	3	NaN	NaN	NaN	0.0015201	1	31231	79.795	74.097	1	38994		+	16732	29	14099	14503	16732	16732		
QQVAFYGQTLGQAQAHSQEQ	20	Unmodified	_QQVAFYGQTLGQAQAHSQEQ_			0	0	0	Q96I24	Q96I24	Q96I24	FUBP3	Far upstream element-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1110.02743	2218.04031	1.7408	0.0019324	-0.66821	-0.00074174	1.0726	0.0011906	1110.52848943783	9.5228	0.053201	9.5228	9.4962	9.5494	0	174	43	1.20774045859593	0.0278401917044975	1.20774045859593	486.739828599551	0	11.2200680551676						227	7	3	NaN	NaN	NaN	2.237E-07	1	34874	86.135	83.42	1	46782			16733	2554	14100	14504	16733	16733		
QQVAPTDDETGK	12	Unmodified	_QQVAPTDDETGK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.804414	1287.59427	2.1685	0.0013982	-4.5414	-0.0029283	-2.373	-0.0015301	645.301107010423	2.5966	0.23058	2.5966	2.5345	2.7651	0	603	28	0.920633820089869	0.0182524998058907	0.920633820089869	372.695181323482	0	7.38906020647732						249	27	2	NaN	NaN	NaN	0.0013708	1	11981	72.922	62.834	1	58199			16734	1703	14101	14505	16734	16734		
QQVPSGESAILDR	13	Unmodified	_QQVPSGESAILDR_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.36243	1398.71031	1.8684	0.0013086	1.1007	0.00077091	2.9692	0.0020795	700.363381121336	7.4915	0.30153	7.4915	7.4205	7.7221	0	477	52	1.0055473068722	0.0342676498063071	1.0055473068722	406.726805552429	0	13.8606822814355						890	35	3	NaN	NaN	NaN	0.00024187	1	15411	79.889	68.534	1	521820			16735	611	14102	14506	16735	16735		
QQVQVVGLQEHLVNSADDVIK	21	Unmodified	_QQVQVVGLQEHLVNSADDVIK_			0	0	0	Q99661	Q99661	Q99661	KIF2C	Kinesin-like protein KIF2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.748284	2318.22302	0.9886	0.00076493	0.18117	0.00014018	1.1698	0.00090511	774.082642333647	13.389	0.070948	13.389	13.363	13.434	0	480	40	1.00353128488872	0.0262119132032216	1.00353128488872	606.495317951387	0	15.8414619172186						227	9	4	NaN	NaN	NaN	0.00077482	1	35796	31.767	28.693	1	49844			16736	2664	14103	14507	16736	16736		
QQWQQLYDTLNAWK	14	Unmodified	_QQWQQLYDTLNAWK_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.449568	1820.88458	1.3689	0.0012477	0.82905	0.00075564	2.1979	0.0020033	911.951968952542	17.575	0.16847	17.575	17.513	17.681	0	285	46	1.13399579921816	0.0299705228229417	1.13399579921816	457.639440587134	0	12.0950124403029						555	20	5	NaN	NaN	NaN	1.6608E-24	1	27746	232.17	204.58	1	198030			16737	2115	14104	14508	16737	16737		
QQYESVAAK	9	Unmodified	_QQYESVAAK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.258914	1022.50327	1.8313	0.00093809	0.17079	8.749E-05	2.0021	0.0010256	512.258883602031	2.6676	0.3636	2.6676	2.6409	3.0045	0	678	40	0.869855008346864	0.0264526463218361	0.869855008346864	353.105901813773	0	10.7380947918944						602	42	4	NaN	NaN	NaN	0.010244	1	4794	60.589	24.956	1	164590			16738	588	14105	14509	16738	16738		
QRLEELQLFK	10	Unmodified	_QRLEELQLFK_			0	0	1	Q96PZ0	Q96PZ0	Q96PZ0	PUS7	Pseudouridylate synthase 7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	435.250472	1302.72959	-2.2986	-0.0010005	-0.99297	-0.00043219	-3.2916	-0.0014327	435.250044856316	10.764	0.070941	10.764	10.72	10.791	0	834	25	0.763668499782291	0.016395568449004	0.763668499782291	463.666682748556	0	9.95468431222957						103	9	2	NaN	NaN	NaN	0.02101	1	12443	48.157	30.762	1	27173			16739	2601	14106	14510	16739	16739		
QSANDFFSYYDSHR	14	Unmodified	_QSANDFFSYYDSHR_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.581497	1735.72266	0.004101	2.3768E-06	0.71275	0.0004131	0.71685	0.00041547	579.581649001428	10.826	0.11529	10.826	10.782	10.897	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	523.058397835174	0	9.86117630784781						242	14	4	NaN	NaN	NaN	0.0019202	1	25483	70.195	69.985	1	76901			16740	2422	14107	14511	16740	16740		
QSDQINWESWLLEDSSR	17	Unmodified	_QSDQINWESWLLEDSSR_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.98216	2091.94976	1.0793	0.00113	0.32376	0.00033898	1.403	0.0014689	1047.48419572191	18.124	0.053196	18.124	18.098	18.151	0	192	31	1.1958073123591	0.0198940394269433	1.1958073123591	482.111342595547	0	8.02064175276769						125	7	3	NaN	NaN	NaN	0.031646	1	33214	28.277	23.461	1	19663			16741	978	14108	14512	16741	16741		
QSDVMIVAGTLTNK	14	Unmodified	_QSDVMIVAGTLTNK_			0	0	0	O75251	O75251	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.889966	1475.76538	1.0674	0.00078869	-0.47487	-0.00035088	0.59253	0.00043782	738.890009134722	11.828	0.23056	11.828	11.722	11.953	0	432	76	1.035754240522	0.0502546402134063	1.035754240522	418.730792046292	0	20.316755150291						580	27	4	NaN	NaN	NaN	2.3533E-06	1	17774	128.57	126.27	1	160560			16742	315	14109	14513	16742	16742		
QSGEAFVELGSEDDVK	16	Unmodified	_QSGEAFVELGSEDDVK_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.396864	1708.77917	2.8778	0.0024616	0.089189	7.6292E-05	2.967	0.0025379	855.396658606681	10.33	0.32809	10.33	10.214	10.543	0	339	61	1.09798411722691	0.0400681242078851	1.09798411722691	443.326112902898	0	16.1780534688019						1436	38	5	NaN	NaN	NaN	3.691E-12	1	24716	157.67	140.68	1	325760			16743	1217	14110	14514	16743	16743		
QSGGTTALPLYFVGLYCDK	19	Unmodified	_QSGGTTALPLYFVGLYCDK_			0	0	0	Q9H9J2	Q9H9J2	Q9H9J2	MRPL44	39S ribosomal protein L44, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.51679	2089.01903	1.002	0.0010476	0.42537	0.00044473	1.4273	0.0014923	1046.01950874636	18.577	0.070935	18.577	18.55	18.621	0	162	34	1.21569043230068	0.0218549328947115	1.21569043230068	490.132116006491	0	8.81129292478903						171	9	3	NaN	NaN	NaN	0.0024564	1	33168	44.16	36.513	1	30298			16744	2937	14111	14515	16744	16744		
QSIAIDDCTFHQCVR	15	Unmodified	_QSIAIDDCTFHQCVR_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.419627	1848.8247	2.0032	0.0018538	0.46126	0.00042686	2.4644	0.0022806	925.419676748146	8.139	0.062068	8.139	8.1036	8.1656	0	228	25	1.17191150690002	0.0159458621604354	1.17191150690002	472.88681110374	0	6.43443456519583						101	8	3	NaN	NaN	NaN	0.028357	1	28447	34.779	27.204	1	16276			16745	2499	14112	14516	16745	16745		
QSLETICLLLAYK	13	Unmodified	_QSLETICLLLAYK_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.426184	1550.83782	0.95321	0.0007401	-0.13085	-0.00010159	0.82236	0.0006385	776.425799153344	17.575	0.1241	17.575	17.539	17.663	0	384	40	1.06790610341098	0.0260927771036219	1.06790610341098	431.534832419261	0	10.5439440403977						315	15	4	NaN	NaN	NaN	0.00044359	1	20097	77.358	72.208	1	84915			16746	1366;992;1365	14113	14517	16746	16746		
QSLGELIGTLNAAK	14	Unmodified	_QSLGELIGTLNAAK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.898648	1413.78274	1.8598	0.0013166	1.3856	0.00098088	3.2455	0.0022975	707.899990393074	15.171	0.23053	15.171	15.109	15.34	1.7764E-15	438	97	1.03173026378327	0.0643570489940839	1.03173026378327	417.273809107365	0	26.0286161212305						983	27	3	NaN	NaN	NaN	2.8269E-67	1	15903	323.54	253.83	1	1454600			16747	1303	14114	14518	16747	16747		
QSLIDWNNPAIINK	14	Unmodified	_QSLIDWNNPAIINK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.435929	1624.85731	2.1526	0.001751	1.6355	0.0013304	3.7881	0.0030813	813.938799422158	14.205	0.12415	14.205	14.161	14.285	0	354	58	1.08796502040166	0.0381093274635713	1.08796502040166	439.463257721369	0	15.3935548318718						531	15	4	NaN	NaN	NaN	9.8744E-12	1	22334	180.81	148.26	1	153300			16748	2013	14115	14519	16748	16748		
QSLQVIESAMER	12	Unmodified	_QSLQVIESAMER_			0	0	0	Q16740	Q16740	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.853383	1389.69221	1.2923	0.00089925	0.0054582	3.7981E-06	1.2978	0.00090305	695.854485152886	11.412	0.088678	11.412	11.367	11.456	0	450	31	1.02367897599655	0.0201365621499445	1.02367897599655	414.087064881464	0	8.14541483511124						214	11	3	NaN	NaN	NaN	0.05089	1	15139	39.702	32.145	1	72519			16749	1904	14116	14520	16749	16749		
QSLTMDPVVK	10	Unmodified	_QSLTMDPVVK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.299724	1116.5849	1.1577	0.00064749	4.4316	0.0024786	5.5893	0.0031261	559.301277884202	7.9261	0.31939	7.9261	7.7753	8.0947	0	615	70	0.912521036363781	0.0466905920016633	0.912521036363781	370.010746028373	0	18.932189057124						549	37	2	NaN	NaN	NaN	0.03632	1	7183	37.591	24.764	1	317260			16750	955	14117	14521	16750	16750		
QSNASSDVEVEEK	13	Unmodified	_QSNASSDVEVEEK_			0	0	0	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.323167	1420.63178	2.5015	0.0017794	-1.3925	-0.00099054	1.109	0.00078886	711.322065667765	3.1375	0.12415	3.1375	3.0932	3.2173	0	519	22	0.97729762293174	0.014139497057216	0.97729762293174	395.24057835731	0	5.7183225083582						156	15	3	NaN	NaN	NaN	0.0030038	1	16104	76.255	64.298	1	29316			16751	336	14118	14522	16751	16751		
QSPEHNLTHPELSVAVEMLSSVALINR	27	Unmodified	_QSPEHNLTHPELSVAVEMLSSVALINR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	743.638103	2970.5233	-1.6324	-0.0012139	1.5413	0.0011462	-0.091125	-6.7764E-05	743.890256529684	19.224	0.053192	19.224	19.197	19.25	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	714.751235292511	0	13.08304724554						44	7	2	NaN	NaN	NaN	0.0040774	1	38174	22.796	22.593	1	8403.2			16752	1095	14119	14523	16752	16752		
QSQLVVDWLESIAK	14	Unmodified	_QSQLVVDWLESIAK_			0	0	0	P57740	P57740	P57740	NUP107	Nuclear pore complex protein Nup107	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.438138	1614.86172	1.6459	0.0013306	-1.162	-0.00093941	0.48391	0.00039121	808.938389162475	19.579	0.097569	19.579	19.552	19.649	0	336	37	1.09998710857178	0.0240375557134762	1.09998710857178	444.342615308171	0	9.71003231593318						119	12	3	NaN	NaN	NaN	0.00090202	1	22047	54.199	50.694	1	21288			16753	1297	14120	14524	16753	16753		
QSSSTNYTNELK	12	Unmodified	_QSSSTNYTNELK_			0	0	0	Q9UHB6	Q9UHB6	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.32297	1370.63139	1.8291	0.0012554	0.22357	0.00015344	2.0527	0.0014088	686.322343779109	4.6627	0.1064	4.6627	4.6184	4.7248	0	507	28	0.985374541851584	0.0181692995022645	0.985374541851584	398.647189565403	0	7.35064675949468						202	13	3	NaN	NaN	NaN	0.0018407	1	14504	42.061	36.91	1	51471			16754	3211	14121	14525	16754	16754		
QSTSFLVLQEILESEEK	17	Unmodified	_QSTSFLVLQEILESEEK_			0	0	0	O00151	O00151	O00151	PDLIM1	PDZ and LIM domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.512228	1979.0099	0.33807	0.00033486	1.5142	0.0014998	1.8523	0.0018347	990.514117809835	19.1	0.0532	19.1	19.073	19.126	0	141	31	1.2295923935727	0.0198531376705422	1.2295923935727	495.918921703915	0	8.00716292446106						172	7	4	NaN	NaN	NaN	1.1384E-06	1	31272	111.38	103.01	1	42889			16755	52	14122	14526	16755	16755		
QSVEDILK	8	Unmodified	_QSVEDILK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.258382	930.502212	-0.73462	-0.00034252	0.11626	5.4206E-05	-0.61836	-0.00028832	466.258393214257	8.8842	0.18635	8.8842	8.8221	9.0085	0	732	31	0.833184998970724	0.0203977162825675	0.833184998970724	338.663970263361	0	8.29104171233723						240	22	2	NaN	NaN	NaN	0.068587	1	2887	21.275	12.512	1	64971			16756	991	14123	14527	16756	16756		
QSVENDIHGLR	11	Unmodified	_QSVENDIHGLR_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.217831	1266.63166	-1.0966	-0.00046411	0.012746	5.3943E-06	-1.0839	-0.00045872	423.217959266864	5.2657	0.19511	5.2657	5.2213	5.4164	0	849	34	0.753417699604308	0.0225611942508325	0.753417699604308	457.579393384233	0	13.702276419497						406	23	3	NaN	NaN	NaN	0.0041874	1	11411	67.507	42.254	1	314090			16757	536	14124	14528	16757	16757		
QSVENDIHGLR	11	Unmodified	_QSVENDIHGLR_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.323108	1266.63166	1.6821	0.001067	0.21611	0.00013708	1.8982	0.0012041	634.323381401615	5.2657	0.26601	5.2657	5.2213	5.4873	0	516	46	0.979317271586824	0.0303031202144891	0.979317271586824	396.521294580964	0	12.2696012884794						590	31	4	NaN	NaN	NaN	6.3574E-23	1	11414	225.68	177.53	1	283280			16758	536	14124	14528	16758	16758		
QSVFPFESGK	10	Unmodified	_QSVFPFESGK_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.282389	1124.55022	0.8446	0.00047575	2.5065	0.0014119	3.3511	0.0018876	563.282059003463	10.569	0.27492	10.569	10.454	10.729	0	645	70	0.892219381832517	0.046729464203025	0.892219381832517	361.747553103742	0	18.9463148610085						919	32	5	NaN	NaN	NaN	0.00065666	1	7386	61.48	40.205	1	265600			16759	745	14125	14529	16759	16759		
QTAAQLILK	9	Unmodified	_QTAAQLILK_			0	0	0	O75367	O75367	O75367	H2AFY	Core histone macro-H2A.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.305667	984.596781	0.38837	0.00019159	-0.27381	-0.00013507	0.11456	5.6515E-05	493.305388872148	8.3697	0.13307	8.3697	8.3253	8.4584	0	669	34	0.875957769340875	0.0223705821148275	0.875957769340875	355.764997573115	0	9.08567783784758						230	16	3	NaN	NaN	NaN	0.056651	1	3947	22.386	18.571	1	73780			16760	324	14126	14530	16760	16760		
QTALVELLK	9	Unmodified	_QTALVELLK_			0	0	0	CON__P02769	CON__P02769	CON__P02769			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.813325	1013.6121	-0.099436	-5.0495E-05	-1.6683	-0.00084718	-1.7677	-0.00089768	507.812522387606	12.706	0.14191	12.706	12.653	12.795	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	351.494723534109	0	6.61020397586378						205	17	2	NaN	NaN	NaN	0.039201	1	4605	44.82	29.239	1	70345		+	16761	26	14127	14531	16761	16761		
QTATQLLK	8	Unmodified	_QTATQLLK_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.768917	901.523281	0.84367	0.00038114	-0.2208	-9.9749E-05	0.62287	0.00028139	451.768776186487	4.9553	0.14185	4.9553	4.911	5.0529	0	720	55	0.841341816837976	0.0366954931166669	0.841341816837976	342.139370530831	0	14.9225590182125						377	17	3	NaN	NaN	NaN	0.046389	1	2358	53.878	34.391	1	213800			16762	1391	14128	14532	16762	16762		
QTEDSLASER	10	Unmodified	_QTEDSLASER_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.264924	1134.5153	1.7911	0.0010178	2.8762	0.0016344	4.6672	0.0026522	568.266399000074	2.9956	0.17734	2.9956	2.9513	3.1286	0	654	22	0.886123392477847	0.0142318728029025	0.886123392477847	359.237734225399	0	5.76965441032144						129	21	2	NaN	NaN	NaN	0.040351	1	7645	34.953	22.886	1	30507			16763	2167	14129	14533	16763	16763		
QTEEQVNDLK	10	Unmodified	_QTEEQVNDLK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.296224	1202.5779	1.7855	0.0010754	-1.3574	-0.00081758	0.42808	0.00025783	602.295357999202	3.5189	0.16846	3.5189	3.4657	3.6342	0	585	37	0.932794566565362	0.0243181264417436	0.932794566565362	377.901340469258	0	9.85195766509844						270	20	3	NaN	NaN	NaN	0.0011811	1	9533	72.042	49.655	1	56397			16764	667	14130	14534	16764	16764		
QTELESLSSELSEVLK	16	Unmodified	_QTELESLSSELSEVLK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.464746	1790.91494	1.1891	0.001066	-0.017756	-1.5918E-05	1.1714	0.0010501	896.464536292973	19.57	0.062063	19.57	19.543	19.605	0	288	37	1.13199748998575	0.0239846644495882	1.13199748998575	456.890781385896	0	9.68056217314478						151	8	3	NaN	NaN	NaN	0.0049107	1	27000	46.768	33.593	1	30776			16765	1668	14131	14535	16765	16765		
QTFCEVPDLDR	11	Unmodified	_QTFCEVPDLDR_			0	0	0	P18858	P18858	P18858	LIG1	DNA ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.316634	1378.61871	1.5247	0.0010525	-0.16109	-0.0001112	1.3636	0.00094132	690.316453126171	9.7445	0.11527	9.7445	9.7002	9.8154	0	519	31	0.97729762293174	0.0201950922586444	0.97729762293174	395.356684861275	0	8.1697371798507						232	14	3	NaN	NaN	NaN	0.037747	1	14756	32.051	26.185	1	48111			16766	759	14132	14536	16766	16766		
QTFEAAILTQLHPR	14	Unmodified	_QTFEAAILTQLHPR_			0	0	0	Q9NPD3	Q9NPD3	Q9NPD3	EXOSC4	Exosome complex component RRP41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.298373	1623.87329	-0.3268	-0.00017722	-1.4177	-0.00076879	-1.7444	-0.00094601	542.297204356034	14.116	0.14189	14.116	14.054	14.196	0	669	25	0.875957769340875	0.0162683841309829	0.875957769340875	530.740250493496	0	9.85696636414241						188	17	3	NaN	NaN	NaN	0.015193	1	22314	58.889	56.41	1	40409			16767	2985	14133	14537	16767	16767		
QTFEAAILTQLHPR	14	Unmodified	_QTFEAAILTQLHPR_			0	0	0	Q9NPD3	Q9NPD3	Q9NPD3	EXOSC4	Exosome complex component RRP41	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.943921	1623.87329	1.7188	0.0013973	1.2699	0.0010323	2.9887	0.0024296	812.945306305051	14.107	0.11528	14.107	14.054	14.169	0	249	25	1.15795408347545	0.0159590169349364	1.15795408347545	467.736436881007	0	6.44638144447555						231	14	3	NaN	NaN	NaN	2.1606E-11	1	22315	121.71	110.36	1	54252			16768	2985	14133	14537	16768	16768		
QTFSPFGQIMEIR	13	Unmodified	_QTFSPFGQIMEIR_			0	0	0	P31483;Q01085	P31483;Q01085	Q01085	TIA1;TIAL1	Nucleolysin TIA-1 isoform p40;Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.392676	1552.7708	1.1292	0.00087786	0.74311	0.00057769	1.8723	0.0014555	777.393614680731	16.714	0.17733	16.714	16.652	16.83	0	348	52	1.09197348738011	0.0340790239869053	1.09197348738011	441.255462440538	0	13.7709895548311						613	21	5	NaN	NaN	NaN	1.0719E-05	1	20151	103.69	96.939	1	247830			16769	1512;924	14134	14538	16769	16769		
QTFSPFGQIMEIR	13	Oxidation (M)	_QTFSPFGQIM(Oxidation (M))EIR_	QTFSPFGQIM(1)EIR	QTFSPFGQIM(90)EIR	0	1	0	P31483;Q01085	P31483;Q01085	Q01085	TIA1;TIAL1	Nucleolysin TIA-1 isoform p40;Nucleolysin TIAR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.390133	1568.76571	1.7895	0.0014055	1.783	0.0014003	3.5725	0.0028058	785.391377483915	14.152	0.079831	14.152	14.116	14.196	0	348	40	1.09197348738011	0.0260424797711383	1.09197348738011	441.215694796518	0	10.5225547499463						152	10	3	NaN	NaN	NaN	0.00020462	1	20625	90.306	75.851	1	31829			16770	1512;924	14134	14539	16770	16770	322	
QTFTHNPLLQPGK	13	Unmodified	_QTFTHNPLLQPGK_			0	0	0	Q15070	Q15070	Q15070	OXA1L	Mitochondrial inner membrane protein OXA1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.898983	1479.78341	1.6655	0.001234	-2.7306	-0.0020231	-1.0651	-0.00078913	740.896773398076	7.1811	0.14186	7.1811	7.0925	7.2343	8.8818E-16	435	28	1.03374239103424	0.0181066471151929	1.03374239103424	417.906916691682	0	7.3199020695709						228	17	3	NaN	NaN	NaN	0.064854	1	17903	35.33	32.227	1	50107			16771	1809	14135	14540	16771	16771		
QTGEGVGPQEYTLLK	15	Unmodified	_QTGEGVGPQEYTLLK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.417402	1618.82025	2.2898	0.0018557	-0.23404	-0.00018967	2.0558	0.0016661	810.416750051309	10.25	0.30147	10.25	10.099	10.401	0	393	46	1.0618830335572	0.0301195105360905	1.0618830335572	428.941452192167	0	12.1666004450499						862	35	5	NaN	NaN	NaN	0.00024862	1	22159	73.502	67.474	1	315340			16772	3161	14136	14541	16772	16772		
QTIDNSQGAYQEAFDISK	18	Unmodified	_QTIDNSQGAYQEAFDISK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.97126	2013.92796	2.7228	0.0027445	-0.37918	-0.0003822	2.3436	0.0023623	1008.4726365818	10.986	0.23058	10.986	10.933	11.163	0	234	85	1.16792504164217	0.0558259059170683	1.16792504164217	470.990379031693	0	22.5129727081607						1420	27	6	NaN	NaN	NaN	2.0506E-34	1	31864	230.55	218.38	1	975280			16773	863	14137	14542	16773	16773		
QTIDNSQGAYQEAFDISK	18	Unmodified	_QTIDNSQGAYQEAFDISK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.316598	2013.92796	1.6133	0.0010847	0.75611	0.00050834	2.3694	0.001593	672.651173812642	10.977	0.17736	10.977	10.933	11.11	0	534	43	0.967195187796614	0.0283044424712918	0.967195187796614	585.060747887511	0	17.121485393779						462	21	3	NaN	NaN	NaN	2.3124E-05	1	31865	137.4	134.11	1	222590			16774	863	14137	14542	16774	16774		
QTIQYIHPADAVK	13	Unmodified	_QTIQYIHPADAVK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.398815	1482.78308	1.9182	0.0014241	-1.1348	-0.00084251	0.78334	0.00058155	742.397756619481	6.7111	0.10643	6.7111	6.6668	6.7732	0	399	43	1.0578662689527	0.0281173586506349	1.0578662689527	427.651359019169	0	11.3666793165432						307	13	4	NaN	NaN	NaN	3.559E-11	1	17999	153.25	132.16	1	84719			16775	2841	14138	14543	16775	16775		
QTIQYIHPADAVK	13	Unmodified	_QTIQYIHPADAVK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.268302	1482.78308	-0.30976	-0.00015342	1.2321	0.00061022	0.92234	0.00045681	495.269421653412	6.72	0.13301	6.72	6.6402	6.7732	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	503.992939042303	0	12.3705647871907						200	16	3	NaN	NaN	NaN	0.036602	1	18000	50.09	42.532	1	71594			16776	2841	14138	14543	16776	16776		
QTLAAFVPLLLK	12	Unmodified	_QTLAAFVPLLLK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.413206	1312.81186	-0.23967	-0.00015756	-0.0054614	-3.5904E-06	-0.24513	-0.00016115	657.413280398521	19.091	0.097542	19.091	19.055	19.153	0	498	40	0.991429299781895	0.0262372893807942	0.991429299781895	401.273073308192	0	10.6193328635978						253	12	4	NaN	NaN	NaN	0.00068166	1	12748	88.181	86.381	1	75212			16777	1794	14139	14544	16777	16777		
QTLATPAMGDIQIGMEDK	18	Unmodified	_QTLATPAMGDIQIGMEDK_			0	0	0	Q86UR5	Q86UR5	Q86UR5	RIMS1	Regulating synaptic membrane exocytosis protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.966076	1917.9176	1.3982	0.0013422	2.0419	0.0019602	3.4401	0.0033024	960.469867446699	13.682	0.12415	13.682	13.611	13.735	0	228	55	1.17191150690002	0.0358782008691478	1.17191150690002	472.759922011357	0	14.4735974900306						301	15	4	NaN	NaN	NaN	0.042364	1	30014	35.246	26.871	1	52543			16778	2168	14140	14545	16778	16778		
QTLDALNYLHDNK	13	Unmodified	_QTLDALNYLHDNK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.594967	1543.76307	-0.070278	-3.6235E-05	0.48759	0.0002514	0.41731	0.00021516	515.595302822842	10.197	0.097562	10.197	10.161	10.259	0	696	25	0.857641857947968	0.0162909868365219	0.857641857947968	519.870419710723	0	9.87498696072066						130	12	2	NaN	NaN	NaN	0.012024	1	19853	53.028	43.514	1	45879			16779	2866	14141	14546	16779	16779		
QTLEILK	7	Unmodified	_QTLEILK_			0	0	0	P61758	P61758	P61758	VBP1	Prefoldin subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.760561	843.506569	0.093883	3.969E-05	0.065082	2.7514E-05	0.15896	6.7204E-05	422.76059271401	8.0591	0.10648	8.0591	8.0237	8.1302	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	354.099283426033	0	8.28273505160507						173	13	2	NaN	NaN	NaN	0.06995	1	1473	33.813	0	1	57785			16780	1349	14142	14547	16780	16780		
QTLENERGELANEVK	15	Unmodified	_QTLENERGELANEVK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.439397	1728.86424	3.1937	0.0027639	-3.0379	-0.0026291	0.15577	0.00013481	865.436687285753	6.1879	0.13305	6.1879	6.1436	6.2767	0	357	52	1.08596037261705	0.0340837206319853	1.08596037261705	438.430384788869	0	13.760482544778						456	16	4	NaN	NaN	NaN	0.057395	1	25298	32.61	22.125	1	150950			16781	972	14143	14548	16781	16781		
QTLENERGELANEVK	15	Unmodified	_QTLENERGELANEVK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.295357	1728.86424	0.36916	0.00021312	1.3043	0.00075295	1.6734	0.00096607	577.296066703404	6.1791	0.088651	6.1791	6.1525	6.2411	0	687	43	0.863749705078866	0.0284973564255872	0.863749705078866	523.074816640095	0	17.2576029831239						306	11	4	NaN	NaN	NaN	0.047761	1	25299	36.46	34.158	1	90741			16782	972	14143	14548	16782	16782		
QTLLDMIAR	9	Unmodified	_QTLLDMIAR_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.794609	1059.57467	-0.35379	-0.00018779	-0.652	-0.00034608	-1.0058	-0.00053387	530.794236418251	15.225	0.10639	15.225	15.189	15.296	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	359.542636560944	0	7.42236325146916						189	13	4	NaN	NaN	NaN	0.0083642	1	5722	62.88	47.298	1	44637			16783	1695	14144	14549	16783	16783		
QTLMWSATWPK	11	Unmodified	_QTLMWSATWPK_			0	0	0	P17844;Q92841	P17844;Q92841	Q92841	DDX5;DDX17	Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.839548	1347.66454	1.1522	0.00077757	1.2129	0.00081849	2.3651	0.0015961	674.840330094303	14.028	0.35468	14.028	13.868	14.223	0	492	61	0.995464410099171	0.0403511222593885	0.995464410099171	402.797709416588	0	16.3273939817208						1170	41	5	NaN	NaN	NaN	0.0047828	1	13830	36.514	31.018	1	477250			16784	2435;743	14145	14550	16784	16784		
QTLQEDLLR	9	Unmodified	_QTLQEDLLR_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.306395	1114.59824	0.34338	0.00019171	-6.9008	-0.0038528	-6.5574	-0.003661	558.302823994328	9.3544	0.15079	9.3544	9.3011	9.4519	0	621	82	0.908462957275599	0.0547651324433178	0.908462957275599	368.373325498757	0	22.20675460453						495	18	2	NaN	NaN	NaN	0.017355	1	7119	48.157	28.902	1	183980			16785	1063	14146	14551	16785	16785		
QTLSIYQALK	10	Unmodified	_QTLSIYQALK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.834788	1163.65502	1.0728	0.00062528	0.044824	2.6125E-05	1.1176	0.0006514	582.834921321789	11.332	0.097583	11.332	11.296	11.394	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	382.148677285417	0	9.84614331219495						276	12	3	NaN	NaN	NaN	0.0022051	1	8446	62.969	45.573	1	76003			16786	1816	14147	14552	16786	16786		
QTLSTPGTIILGTIPVPK	18	Unmodified	_QTLSTPGTIILGTIPVPK_			0	0	0	Q9BSD7	Q9BSD7	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.545677	1835.0768	1.2631	0.0011602	1.5731	0.0014449	2.8361	0.0026051	919.048938617128	17.468	0.19509	17.468	17.353	17.548	0	231	34	1.16991841121525	0.0219300818025272	1.16991841121525	472.108894435653	0	8.84966556250697						386	23	3	NaN	NaN	NaN	0.00022295	1	28114	56.08	48.504	1	95094			16787	2722	14148	14553	16787	16787		
QTLYTCLDVGLR	12	Unmodified	_QTLYTCLDVGLR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.871576	1437.7286	2.4418	0.0017578	3.0976	0.0022299	5.5394	0.0039877	720.378050320854	12.919	0.20398	12.919	12.857	13.061	0	444	37	1.02770517576159	0.0241538670444676	1.02770517576159	415.57882242823	0	9.76723272410226						236	24	2	NaN	NaN	NaN	0.052861	1	16614	36.514	28.04	1	67994			16788	858	14149	14554	16788	16788		
QTNHCYIAILNIIQGEVDPTQVHK	24	Unmodified	_QTNHCYIAILNIIQGEVDPTQVHK_			0	0	0	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	698.610351	2790.4123	-0.61602	-0.00043036	-0.16653	-0.00011634	-0.78255	-0.0005467	698.860404614792	17.344	0.070943	17.344	17.317	17.388	0	585	22	0.932794566565362	0.0141826244538193	0.932794566565362	750.900463320924	0	11.417025415031						98	9	3	NaN	NaN	NaN	0.02233	1	37870	20.03	19.988	1	13397			16789	815	14150	14555	16789	16789		
QTNLENLDQAFSVAER	16	Unmodified	_QTNLENLDQAFSVAER_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.950129	1833.88571	2.0748	0.0019046	-1.9034	-0.0017472	0.1714	0.00015734	917.9488665311	14.054	0.15075	14.054	14.001	14.152	0	300	73	1.12400150285141	0.0479759546023661	1.12400150285141	453.581806293899	0	19.3603123234365						642	18	5	NaN	NaN	NaN	2.5403E-17	1	28073	120.75	112.37	1	260770			16790	1816	14151	14556	16790	16790		
QTNPSAMEVEEDDPVPEIR	19	Unmodified	_QTNPSAMEVEEDDPVPEIR_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.49424	2154.97393	1.829	0.0019725	1.3126	0.0014156	3.1416	0.0033882	1078.99547472859	11.704	0.24834	11.704	11.518	11.766	0	183	85	1.20177511391933	0.0556880648197788	1.20177511391933	484.423911031505	0	22.4473196734743						1942	29	9	NaN	NaN	NaN	2.3982E-07	1	34103	139.94	116.98	1	706110			16791	1265	14152	14557	16791	16791		
QTPAGPETEEEPYR	14	Unmodified	_QTPAGPETEEEPYR_			0	0	0	Q13505	Q13505	Q13505	MTX1	Metaxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.365367	1602.71618	2.8015	0.0022478	-2.7473	-0.0022044	0.054152	4.345E-05	802.363347524889	5.0883	0.10638	5.0883	5.0263	5.1327	0	447	52	1.02569221487577	0.034239256244545	1.02569221487577	414.357710219702	0	13.8319269770744						245	13	2	NaN	NaN	NaN	0.063813	1	21664	22.142	20.992	1	47696			16792	1674	14153	14558	16792	16792		
QTPDFHTVIGDTVTGLLER	19	Unmodified	_QTPDFHTVIGDTVTGLLER_			0	0	0	Q9H8H0	Q9H8H0	Q9H8H0	NOL11	Nucleolar protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.363771	2098.06948	-0.29668	-0.00020778	-0.861	-0.00060301	-1.1577	-0.0008108	700.697578625539	18.408	0.11533	18.408	18.373	18.488	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	548.155313796767	0	9.81903119510355						262	14	4	NaN	NaN	NaN	0.030499	1	33284	23.779	22.508	1	54896			16793	2925	14154	14559	16793	16793		
QTQIFTTYSDNQPGVLIQVYEGER	24	Unmodified	_QTQIFTTYSDNQPGVLIQVYEGER_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	929.459239	2785.35589	0.88927	0.00082654	0.67782	0.00063	1.5671	0.0014565	929.794147695942	16.315	0.15072	16.315	16.253	16.404	0	435	178	1.03374239103424	0.118519565723081	1.03374239103424	624.129397220046	0	71.5570395052882						1533	18	5	NaN	NaN	NaN	2.7079E-13	1	37856	133.29	132.81	1	282780			16794	618	14155	14560	16794	16794		
QTQTFTTYSDNQPGVLIQVYEGER	24	Unmodified	_QTQTFTTYSDNQPGVLIQVYEGER_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1387.66703	2773.3195	0.75403	0.0010463	-0.55559	-0.00077098	0.19844	0.00027537	1388.16783957013	15.03	0.088681	15.03	14.976	15.065	0	63	22	1.28111162701928	0.0138468290460385	1.28111162701928	515.665623137897	0	5.57354533197281						110	11	3	NaN	NaN	NaN	0.011042	1	37821	36.943	35.846	1	18037			16795	640	14156	14561	16795	16795		
QTQTFTTYSDNQPGVLIQVYEGER	24	Unmodified	_QTQTFTTYSDNQPGVLIQVYEGER_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	925.447111	2773.3195	1.6989	0.0015722	-0.70353	-0.00065108	0.99536	0.00092116	925.78094637941	15.003	0.18621	15.003	14.941	15.127	1.7764E-15	438	166	1.03173026378327	0.110560524261073	1.03173026378327	622.927995650795	0	66.7531506960999						2594	22	6	NaN	NaN	NaN	4.8953E-13	1	37822	178.05	174	1	651090			16796	640	14156	14561	16796	16796		
QTSGGPVDASSEYQQELER	19	Unmodified	_QTSGGPVDASSEYQQELER_			0	0	0	P18859	P18859	P18859	ATP5J	ATP synthase-coupling factor 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.97453	2079.93451	2.2133	0.0023039	-0.91101	-0.00094834	1.3022	0.0013556	1041.47497419404	8.5293	0.14192	8.5293	8.4761	8.618	0	228	73	1.17191150690002	0.0478310427337734	1.17191150690002	472.495318632108	0	19.2846845891822						681	17	4	NaN	NaN	NaN	1.387E-14	1	33019	122.13	103.32	1	211540			16797	760	14157	14562	16797	16797		
QTTVSNSQQAYQEAFEISK	19	Unmodified	_QTTVSNSQQAYQEAFEISK_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.0162	2158.01784	2.5061	0.0027066	-1.0398	-0.001123	1.4663	0.0015836	1080.51670871008	10.729	0.19508	10.729	10.684	10.879	0	195	85	1.19381749893585	0.0557110028588506	1.19381749893585	481.211933654077	0	22.4563632510096						1107	23	5	NaN	NaN	NaN	1.9549E-58	1	34142	254.16	247.96	1	450430			16798	932	14158	14563	16798	16798		
QTTVSNSQQAYQEAFEISK	19	Unmodified	_QTTVSNSQQAYQEAFEISK_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.346557	2158.01784	1.649	0.0011879	-0.0051915	-3.7397E-06	1.6438	0.0011841	720.680987903951	10.738	0.13299	10.738	10.684	10.817	0	540	61	0.963152256458504	0.0404461214700302	0.963152256458504	582.349028418888	0	24.454866178678						682	16	5	NaN	NaN	NaN	4.3552E-11	1	34143	197.17	192.07	1	231990			16799	932	14158	14563	16799	16799		
QTVADQVLVGSYCVFSNQGGLVHPK	25	Unmodified	_QTVADQVLVGSYCVFSNQGGLVHPK_			0	0	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	901.790155	2702.34863	1.4808	0.0013354	0.56248	0.00050724	2.0433	0.0018426	902.457375201933	15.704	0.23056	15.704	15.597	15.828	0	258	94	1.15196821829984	0.0619391344268518	1.15196821829984	695.615211484376	0	37.401903463173						1138	27	5	NaN	NaN	NaN	1.7691E-13	1	37610	207	192.99	1	563090			16800	1286	14159	14564	16800	16800		
QTVLESIR	8	Unmodified	_QTVLESIR_			0	0	0	Q5T9A4;Q9NVI7	Q5T9A4;Q9NVI7	Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.271824	944.529095	0.28801	0.00013631	-5.6739	-0.0026853	-5.3859	-0.002549	473.269156159886	7.261	0.15961	7.261	7.19	7.3496	0	699	46	0.85560534332665	0.0305519708780012	0.85560534332665	347.702015629222	0	12.4157497829823						279	19	3	NaN	NaN	NaN	0.011762	1	3155	65.313	26.99	1	86890			16801	3068;1996	14160	14565	16801	16801		
QTYFLPVIGLVDAEK	15	Unmodified	_QTYFLPVIGLVDAEK_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.963988	1691.91342	1.0089	0.00085453	-0.73209	-0.00062005	0.27685	0.00023448	846.963221524989	19.171	0.12413	19.171	19.109	19.233	0	348	79	1.09197348738011	0.0521460315405395	1.09197348738011	440.934602184855	0	21.0563625752599						799	15	4	NaN	NaN	NaN	0.00024207	1	24265	75.012	71.029	1	290500			16802	746	14161	14566	16802	16802		
QTYSTEPNNLK	11	Unmodified	_QTYSTEPNNLK_			0	0	0	P46779	P46779	P46779	RPL28	60S ribosomal protein L28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.817324	1293.62009	3.3095	0.0021439	-3.0328	-0.0019647	0.27662	0.0001792	647.816059798223	3.9534	0.39903	3.9534	3.847	4.246	-8.8818E-16	552	76	0.955063035883597	0.0505681634455363	0.955063035883597	386.613851596694	0	20.4702220725803						1291	46	5	NaN	NaN	NaN	1.8289E-11	1	12176	174.8	142.85	1	612290			16803	1088	14162	14567	16803	16803		
QVCEIIESPLFLK	13	Unmodified	_QVCEIIESPLFLK_			0	0	0	Q7L5N1	Q7L5N1	Q7L5N1	COPS6	COP9 signalosome complex subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.426184	1574.83782	1.4081	0.0011102	-1.2237	-0.00096483	0.1844	0.00014538	788.92680743157	16.014	0.11524	16.014	15.97	16.085	0	378	49	1.07192009927972	0.0320942731309124	1.07192009927972	433.098453131614	0	12.9673658108676						465	14	4	NaN	NaN	NaN	0.00029461	1	20832	64.906	49.027	1	124780			16804	2120	14163	14568	16804	16804		
QVCQLPGLFSYAQHIASIDGR	21	Unmodified	_QVCQLPGLFSYAQHIASIDGR_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.39871	2359.1743	0.83016	0.00065367	1.8022	0.001419	2.6323	0.0020727	787.399098385574	17.362	0.18619	17.362	17.282	17.468	0	414	55	1.04781950764076	0.0361808316121679	1.04781950764076	633.195935138984	0	21.8640284321059						502	22	4	NaN	NaN	NaN	0.00064827	1	36121	56.473	49.792	1	111040			16805	3458	14164	14569	16805	16805		
QVDGDNSHVEMK	12	Unmodified	_QVDGDNSHVEMK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.538353	1357.59323	-0.3782	-0.00017153	1.1241	0.00050983	0.74591	0.0003383	453.538859190902	2.499	0.28379	2.499	2.4724	2.7562	0	804	28	0.78414869089473	0.0184180594239544	0.78414869089473	475.899714390775	0	11.1779173022542						284	33	4	NaN	NaN	NaN	0.0017408	1	14117	35.33	31.722	1	61909			16806	495	14165	14570	16806	16806		
QVDGDNSHVEMK	12	Unmodified	_QVDGDNSHVEMK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.803891	1357.59323	2.284	0.0015526	-1.3905	-0.00094525	0.89348	0.00060739	679.803122250404	2.499	0.11529	2.499	2.4813	2.5966	0	531	22	0.969216233931596	0.0141453664732367	0.969216233931596	392.147724699318	0	5.72325667205996						100	14	2	NaN	NaN	NaN	0.0021973	1	14118	54.584	50.976	1	19758			16807	495	14165	14570	16807	16807		
QVEDDIQQLLK	11	Unmodified	_QVEDDIQQLLK_			0	0	0	P35998	P35998	P35998	PSMC2	26S protease regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.856449	1327.69835	1.4138	0.00094	0.14304	9.5103E-05	1.5569	0.0010351	664.856402229571	13.593	0.15961	13.593	13.522	13.682	0	480	40	1.00353128488872	0.0262046696285547	1.00353128488872	406.1238213006	0	10.6048916717614						379	19	4	NaN	NaN	NaN	2.2904E-11	1	13225	154.35	135.1	1	164550			16808	981	14166	14571	16808	16808		
QVEDLQATFSSIHSFQDLSSSILAQSR	27	Unmodified	_QVEDLQATFSSIHSFQDLSSSILAQSR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	998.831624	2993.47304	0.62072	0.00061999	0.41869	0.0004182	1.0394	0.0010382	999.166683185808	19.188	0.053204	19.188	19.162	19.215	0	363	31	1.08195024817156	0.0200561522597538	1.08195024817156	653.009564172892	0	12.1048627404634						201	7	5	NaN	NaN	NaN	0.0018603	1	38214	42.066	42.066	1	42755			16809	272	14167	14572	16809	16809		
QVEEIFNLK	9	Unmodified	_QVEEIFNLK_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.305864	1118.59717	-0.0070065	-3.9258E-06	2.009	0.0011256	2.002	0.0011217	560.30728086454	11.589	0.17739	11.589	11.527	11.704	0	621	28	0.908462957275599	0.0182626235094615	0.908462957275599	368.357198954682	0	7.40500070766052						164	21	2	NaN	NaN	NaN	0.0054918	1	7236	53.878	14.554	1	55179			16810	1459	14168	14573	16810	16810		
QVEELQQR	8	Unmodified	_QVEELQQR_			0	0	0	Q9BRP8	Q9BRP8	Q9BRP8	WIBG	Partner of Y14 and mago	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.269813	1028.52507	1.1014	0.00056752	-8.8839	-0.0045776	-7.7825	-0.0040101	515.264870873948	2.9602	0.17734	2.9602	2.9247	3.102	0	714	52	0.845418525735192	0.0346544452198196	0.845418525735192	343.159595017454	0	14.0664121085427						218	21	2	NaN	NaN	NaN	0.013198	1	4949	60.709	22.387	1	55825			16811	2710	14169	14574	16811	16811		
QVEHPLLSGLLYPGLQALDEEYLK	24	Unmodified	_QVEHPLLSGLLYPGLQALDEEYLK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	909.153088	2724.43743	1.1003	0.0010003	0.43961	0.00039967	1.5399	0.0014	909.487827092699	19.72	0.062073	19.72	19.685	19.747	0	387	61	1.06589869032374	0.0401676649584974	1.06589869032374	643.615475229468	0	24.25421009127						358	8	5	NaN	NaN	NaN	2.9936E-06	1	37674	77.347	76.969	1	73314			16812	1251	14170	14575	16812	16812		
QVELALWDTAGQEDYDR	17	Unmodified	_QVELALWDTAGQEDYDR_			0	0	0	P61586;P08134;P62745	P61586	P61586	RHOA;RHOC;RHOB	Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.96598	2007.9174	1.0703	0.0010756	0.32007	0.00032166	1.3904	0.0013973	1005.46741906256	14.613	0.15076	14.613	14.568	14.719	0	120	43	1.2434810169581	0.0277677338051987	1.2434810169581	501.470191634004	0	11.198153090104						430	18	4	NaN	NaN	NaN	9.3498E-12	1	31768	148.57	145.49	1	117920			16813	574	14171	14576	16813	16813		
QVELALWDTAGQEDYDR	17	Unmodified	_QVELALWDTAGQEDYDR_			0	0	0	P61586;P08134;P62745	P61586	P61586	RHOA;RHOC;RHOB	Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.96598	2007.9174	1.7832	0.0017921	0.22816	0.0002293	2.0114	0.0020214	1005.46745069596	14.613	0.11528	14.613	14.568	14.684	0	234	61	1.16792504164217	0.0398591940007655	1.16792504164217	471.000028813571	0	16.0743890690531						677	14	4	NaN	NaN	NaN	9.9372E-07	1	31770	85.081	80.774	1	250940			16814	574	14171	14576	16814	16814		
QVEPLDPPAGSAPGEHVFVK	20	Unmodified	_QVEPLDPPAGSAPGEHVFVK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.024978	2073.0531	1.8036	0.0012482	-0.17538	-0.00012136	1.6282	0.0011268	692.358797837563	9.9041	0.28372	9.9041	9.7534	10.037	0	480	97	1.00353128488872	0.0645350759866551	1.00353128488872	606.922197406489	0	39.0299442751889						1444	33	4	NaN	NaN	NaN	0.0028276	1	32914	62.711	55.504	1	388970			16815	1251	14172	14577	16815	16815		
QVEVINFGDCLVR	13	Unmodified	_QVEVINFGDCLVR_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.895583	1547.77661	1.6176	0.0012535	0.55784	0.00043226	2.1755	0.0016858	774.896680071876	14.391	0.15957	14.391	14.32	14.48	0	390	49	1.06389100039157	0.0321341264646959	1.06389100039157	429.91987308803	0	12.985446409841						460	19	4	NaN	NaN	NaN	2.9561E-07	1	19979	135.28	97.691	1	131790			16816	1075	14173	14578	16816	16816		
QVGVGYVDSIQR	12	Unmodified	_QVGVGYVDSIQR_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.848958	1319.68336	1.4187	0.00093754	0.16396	0.00010835	1.5826	0.0010459	660.848908037871	8.3697	0.11532	8.3697	8.3253	8.4406	0	525	43	0.973257487423603	0.0282770433233913	0.973257487423603	393.896814665021	0	11.4442862625323						309	14	4	NaN	NaN	NaN	0.00058925	1	12972	72.922	57.043	1	119420			16817	1063	14174	14579	16817	16817		
QVGYEDQWLQLLR	13	Unmodified	_QVGYEDQWLQLLR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.428104	1646.84166	1.2074	0.0009954	1.3617	0.0011226	2.569	0.002118	824.428697956192	17.903	0.088641	17.903	17.867	17.956	0	303	37	1.12200181823275	0.0239945682557239	1.12200181823275	453.160643477258	0	9.69106628351926						212	11	3	NaN	NaN	NaN	0.00085579	1	22950	44.598	40.351	1	71646			16818	268	14175	14580	16818	16818		
QVHCEEFIPEFEK	13	Unmodified	_QVHCEEFIPEFEK_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.595979	1690.76611	0.0060625	3.4228E-06	0.86288	0.00048718	0.86895	0.0004906	564.930735697646	10.214	0.13301	10.214	10.143	10.277	0	687	43	0.863749705078866	0.0284933997158956	0.863749705078866	523.168448949882	0	17.2582956000118						241	16	2	NaN	NaN	NaN	0.029932	1	24222	60.547	55.16	1	63153			16819	1733	14176	14581	16819	16819		
QVHPDTGISSK	11	Unmodified	_QVHPDTGISSK_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;Q96A08;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BA;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-A;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.801477	1167.5884	2.7552	0.0016112	-1.2579	-0.00073561	1.4973	0.00087562	584.800737156048	2.3306	0.52318	2.3306	2.2685	2.7917	0	639	94	0.896281965493857	0.0629482876634733	0.896281965493857	363.232474302731	0	25.5107914265851						1695	60	5	NaN	NaN	NaN	3.6303E-12	1	8543	183.57	129.69	1	1596800			16820	283;550	14177	14582	16820	16820		
QVHPDTGISSK	11	Unmodified	_QVHPDTGISSK_			0	0	0	Q99880;Q93079;Q99877;P62807;P58876;O60814;Q5QNW6;Q99879;P57053;Q96A08;P33778;Q16778;P23527;P06899;Q8N257	Q99880;P33778	Q99880	HIST1H2BL;HIST1H2BH;HIST1H2BN;HIST1H2BC;HIST1H2BD;HIST1H2BK;HIST2H2BF;HIST1H2BM;H2BFS;HIST1H2BA;HIST1H2BB;HIST2H2BE;HIST1H2BO;HIST1H2BJ;HIST3H2BB	Histone H2B type 1-L;Histone H2B type 1-H;Histone H2B type 1-N;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-D;Histone H2B type 1-K;Histone H2B type 2-F;Histone H2B type 1-M;Histone H2B type F-S;Histone H2B type 1-A;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 1-O;Histone H2B type 1-J;Histone H2B type 3-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	390.20341	1167.5884	0.3111	0.00012139	2.3369	0.00091185	2.6479	0.0010332	390.204338851072	2.3306	0.73602	2.3306	2.2685	3.0045	0	837	58	0.761618911097395	0.0389476287263517	0.761618911097395	462.982526454136	0	23.675976639212						1851	84	5	NaN	NaN	NaN	0.0015882	1	8545	102.55	88.898	1	1936200			16821	283;550	14177	14582	16821	16821		
QVIINLINQK	10	Unmodified	_QVIINLINQK_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.86388	1181.71321	0.31241	0.00018491	1.2011	0.00071087	1.5135	0.00089578	591.865055395531	11.66	0.07981	11.66	11.633	11.713	0	546	31	0.959108205975751	0.0202230534711471	0.959108205975751	388.639544688928	0	8.19456891754004						135	10	3	NaN	NaN	NaN	0.00017837	1	8930	94.806	17.734	1	29110			16822	3043	14178	14583	16822	16822		
QVINNACATQAIVSVLLNCTHQDVHLGETLSEFK	34	Unmodified	_QVINNACATQAIVSVLLNCTHQDVHLGETLSEFK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	953.229187	3808.88764	1.4477	0.00138	0.16188	0.00015431	1.6095	0.0015343	953.480519458093	19.898	0.03547	19.898	19.88	19.915	0	276	31	1.13998907770044	0.0199762230522604	1.13998907770044	916.474958630992	0	16.0595470198309						130	5	6	NaN	NaN	NaN	1.4116E-07	1	38739	61.529	59.229	1	26194			16823	3434	14179	14584	16823	16823		
QVIPGLEQSLLDMCVGEK	18	Unmodified	_QVIPGLEQSLLDMCVGEK_			0	0	0	Q9NYL4	Q9NYL4	Q9NYL4	FKBP11	Peptidyl-prolyl cis-trans isomerase FKBP11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.51065	2015.00675	1.3684	0.00138	-4.2855	-0.0043219	-2.9171	-0.0029419	1009.00811178992	17.557	0.21282	17.557	17.442	17.654	0	183	79	1.20177511391933	0.0517529516954596	1.20177511391933	484.639370528508	0	20.8703921741912						912	25	4	NaN	NaN	NaN	0.0064045	1	31898	46.206	33.523	1	249230			16824	3118	14180	14585	16824	16824		
QVLDLEDLVFTQGSHFMANK	20	Unmodified	_QVLDLEDLVFTQGSHFMANK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.715816	2291.12562	1.0114	0.0007734	0.73147	0.00055937	1.7428	0.0013328	765.050461021203	18.63	0.097538	18.63	18.594	18.692	0	390	43	1.06389100039157	0.0281134808149035	1.06389100039157	643.019660947759	0	16.9918919278451						320	12	5	NaN	NaN	NaN	8.4898E-06	1	35575	74.62	66.252	1	105390			16825	350	14181	14586	16825	16825		
QVLDLEDLVFTQGSHFMANK	20	Oxidation (M)	_QVLDLEDLVFTQGSHFM(Oxidation (M))ANK_	QVLDLEDLVFTQGSHFM(1)ANK	QVLDLEDLVFTQGSHFM(91)ANK	0	1	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.047454	2307.12053	0.36446	0.00028065	1.0228	0.00078757	1.3872	0.0010682	770.382462929147	16.989	0.07093	16.989	16.963	17.034	0	375	31	1.07392668217569	0.020067214614357	1.07392668217569	649.058155070798	0	12.128192279027						196	9	4	NaN	NaN	NaN	0.00099362	1	35691	91.457	84.468	1	42331			16826	350	14181	14587	16826	16826	57	
QVLEPSFR	8	Unmodified	_QVLEPSFR_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	488.266542	974.51853	0.5599	0.00027338	-1.3199	-0.00064447	-0.76001	-0.00037109	488.26613816632	7.4738	0.28372	7.4738	7.394	7.6777	0	702	79	0.853568545818287	0.0529825331575728	0.853568545818287	346.721141100117	0	21.5216041462231						1321	33	4	NaN	NaN	NaN	0.0015763	1	3728	105.04	62.811	1	904830			16827	859	14182	14588	16827	16827		
QVLLGDQIPK	10	Unmodified	_QVLLGDQIPK_			0	0	0	P28072	P28072	P28072	PSMB6	Proteasome subunit beta type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.829506	1109.64446	0.66411	0.00036913	2.0348	0.001131	2.6989	0.0015001	555.830608221715	9.2303	0.14192	9.2303	9.1947	9.3366	0	588	43	0.93076847747433	0.0283750805572571	0.93076847747433	377.438546410761	0	11.5064588230157						192	17	2	NaN	NaN	NaN	0.062791	1	6990	36.24	8.5357	1	52909			16828	874	14184	14589	16828	16828		
QVLLSAAEAAEVILR	15	Unmodified	_QVLLSAAEAAEVILR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.310279	1581.90901	-1.0842	-0.00057278	1.545	0.00081626	0.46086	0.00024348	528.311258041641	18.594	0.088658	18.594	18.559	18.648	0	672	22	0.873923798053065	0.0142397763386857	0.873923798053065	529.626506323824	0	8.62977185183911						113	11	3	NaN	NaN	NaN	1.4166E-06	1	21034	159.12	149.86	1	19895			16829	1461	14185	14590	16829	16829		
QVLLSAAEAAEVILR	15	Unmodified	_QVLLSAAEAAEVILR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.96178	1581.90901	1.1858	0.00093909	-0.50877	-0.00040293	0.677	0.00053616	791.961573057413	18.594	0.1596	18.594	18.55	18.71	0	366	46	1.07994477139643	0.0300987514489623	1.07994477139643	436.323736249992	0	12.1606215766846						406	19	4	NaN	NaN	NaN	3.6599E-12	1	21035	163.93	123.55	1	119100			16830	1461	14185	14590	16830	16830		
QVLLSAAEAAEVILR	15	Unmodified	_QVLLSAAEAAEVILR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.96178	1581.90901	0.9632	0.00076282	0.85839	0.00067981	1.8216	0.0014426	791.96267131737	18.585	0.14188	18.585	18.55	18.692	0	222	37	1.17589687683038	0.0239155091765686	1.17589687683038	475.090695596155	0	9.6624424421114						248	17	3	NaN	NaN	NaN	0.04372	1	21036	19.89	15.644	1	52680			16831	1461	14185	14590	16831	16831		
QVLLYEPQVNSPK	13	Unmodified	_QVLLYEPQVNSPK_			0	0	0	Q93034	Q93034	Q93034	CUL5	Cullin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.914298	1513.81404	2.4254	0.0018383	-0.47694	-0.00036148	1.9485	0.0014768	757.913787899721	10.117	0.062067	10.117	10.081	10.143	0	336	31	1.09998710857178	0.0200285363602049	1.09998710857178	444.594769266652	0	8.09516987283217						145	8	3	NaN	NaN	NaN	0.0029134	1	18940	57.293	51.427	1	23179			16832	2453	14186	14591	16832	16832		
QVLQGLDYLHSK	12	Unmodified	_QVLQGLDYLHSK_			0	0	0	P78362	P78362	P78362	SRPK2	SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.589265	1399.74596	-1.7394	-0.00081331	0.74838	0.00034994	-0.99098	-0.00046337	467.589615913475	9.6381	0.088671	9.6381	9.5938	9.6824	0	777	19	0.802556497112065	0.0122641870592189	0.802556497112065	486.923755957099	0	7.44087680820496						125	11	3	NaN	NaN	NaN	0.051349	1	15451	13.175	6.484	1	27358			16833	1460	14187	14592	16833	16833		
QVLVAPGNAGTACSEK	16	Unmodified	_QVLVAPGNAGTACSEK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.401229	1600.78791	2.991	0.002397	-2.2356	-0.0017916	0.7554	0.00060538	801.399990305552	5.7179	0.22167	5.7179	5.6647	5.8864	0	375	76	1.07392668217569	0.0501992080975948	1.07392668217569	433.847878660755	0	20.2796152708202						980	26	4	NaN	NaN	NaN	1.5187E-09	1	21606	110.58	88.538	1	362140			16834	801	14188	14593	16834	16834		
QVMVVPVGPTCDEYAQK	17	Unmodified	_QVMVVPVGPTCDEYAQK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.977983	1919.91212	0.72849	0.00046695	-1.1468	-0.00073509	-0.41834	-0.00026815	640.977180325673	10.746	0.08868	10.746	10.702	10.791	-1.7764E-15	648	79	0.890187667287968	0.0528209570773358	0.890187667287968	538.658851921577	0	31.9623346202487						504	11	3	NaN	NaN	NaN	0.00011346	1	30054	108.24	102.22	1	108920			16835	857	14189	14594	16835	16835		
QVMVVPVGPTCDEYAQK	17	Unmodified	_QVMVVPVGPTCDEYAQK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.963336	1919.91212	2.6644	0.0025604	-1.0878	-0.0010453	1.5767	0.0015151	961.464377381442	10.746	0.22169	10.746	10.676	10.897	0	258	124	1.15196821829984	0.0817170850711313	1.15196821829984	464.711157952751	0	32.9651813519431						1265	26	5	NaN	NaN	NaN	4.4479E-10	1	30055	106.47	98.89	1	524840			16836	857	14189	14594	16836	16836		
QVMVVPVGPTCDEYAQK	17	Oxidation (M)	_QVM(Oxidation (M))VVPVGPTCDEYAQK_	QVM(1)VVPVGPTCDEYAQK	QVM(48)VVPVGPTCDEYAQK	0	1	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.960794	1935.90703	2.5978	0.0025172	-2.9001	-0.0028101	-0.30231	-0.00029292	969.460108038764	9.0706	0.10641	9.0706	9.0262	9.1326	0	267	61	1.14597988355104	0.0399195054256132	1.14597988355104	462.268023364444	0	16.1028226862086						455	13	4	NaN	NaN	NaN	0.0054709	1	30435	47.915	45.2	1	86428			16837	857	14189	14595	16837	16837	289	
QVPDSAATATAYLCGVK	17	Unmodified	_QVPDSAATATAYLCGVK_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.435269	1750.85598	1.9022	0.0016672	-1.1096	-0.00097249	0.79261	0.00069467	876.935829813085	11.678	0.15961	11.678	11.607	11.766	0	312	40	1.11600111266355	0.0260066420921716	1.11600111266355	450.513586885216	0	10.4985071061632						489	19	6	NaN	NaN	NaN	0.00010459	1	25915	97.084	72.263	1	151380			16838	613	14190	14596	16838	16838		
QVPDSAATATAYLCGVK	17	Unmodified	_QVPDSAATATAYLCGVK_			0	0	0	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.435269	1750.85598	1.8458	0.0016177	-0.56788	-0.00049771	1.2779	0.00112	876.434967669758	11.678	0.097534	11.678	11.633	11.731	0	195	67	1.19381749893585	0.0437608989568621	1.19381749893585	481.926939980201	0	17.6656449950366						630	12	5	NaN	NaN	NaN	1.8828E-06	1	25916	96.313	85.525	1	246660			16839	613	14190	14596	16839	16839		
QVQEFLK	7	Unmodified	_QVQEFLK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.25036	890.486168	-0.16256	-7.2542E-05	-0.9184	-0.00040984	-1.081	-0.00048238	446.24988328842	6.1702	0.12414	6.1702	6.1259	6.25	0	735	25	0.831145085810763	0.016324979319214	0.831145085810763	338.055620886435	0	6.63993701452455						218	15	3	NaN	NaN	NaN	0.023612	1	2173	70.67	23.834	1	64162			16840	680	14191	14597	16840	16840		
QVQFHQGFGDLAVLK	15	Unmodified	_QVQFHQGFGDLAVLK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.951746	1685.88894	1.6297	0.0013754	1.7891	0.0015099	3.4188	0.0028853	844.454578481032	12.449	0.062055	12.449	12.423	12.485	0	282	28	1.13599383354359	0.0179823106306443	1.13599383354359	458.723152972881	0	7.2613970134816						126	8	4	NaN	NaN	NaN	1.8268E-06	1	24084	106.11	103.03	1	24580			16841	1611	14192	14598	16841	16841		
QVQHEESTEGEADHSGYAGELGFR	24	Unmodified	_QVQHEESTEGEADHSGYAGELGFR_			0	0	0	Q92890	Q92890	Q92890	UFD1L	Ubiquitin fusion degradation protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.388143	2632.1426	2.1255	0.001867	-0.80799	-0.00070973	1.3175	0.0011573	878.721912856034	7.1102	0.06208	7.1102	7.0836	7.1457	0	402	31	1.05585747106793	0.0200921384005985	1.05585747106793	637.665845270347	0	12.1342802107066						171	8	3	NaN	NaN	NaN	0.055939	1	37364	3.8671	3.829	1	31658			16842	2440	14193	14599	16842	16842		
QVQSLTCEVDALK	13	Unmodified	_QVQSLTCEVDALK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.879598	1489.74464	2.2229	0.001658	1.1188	0.0008345	3.3417	0.0024925	745.881198057117	10.702	0.31921	10.702	10.622	10.942	0	414	73	1.04781950764076	0.0482544393835054	1.04781950764076	423.571559564396	0	19.5064207113278						1328	37	5	NaN	NaN	NaN	1.7685E-11	1	18217	165.39	137.29	1	1449300			16843	588	14194	14600	16843	16843		
QVSDLISVLR	10	Unmodified	_QVSDLISVLR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.332413	1128.65027	0.3861	0.00021828	-2.3422	-0.0013241	-1.9561	-0.0011058	565.331149592097	14.249	0.21277	14.249	14.205	14.418	0	666	76	0.877991458330206	0.0507999489350157	0.877991458330206	355.963246650478	0	20.5957752561481						680	25	4	NaN	NaN	NaN	0.00014222	1	7500	120.33	91.023	1	236490			16844	743	14195	14601	16844	16844		
QVSIEEGERKAK	12	Unmodified	_QVSIEEGERKAK_			0	0	2	P20340;Q53S08	P20340	P20340	RAB6A;RAB6C	Ras-related protein Rab-6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.372798	1372.73104	2.4497	0.0016839	-9.8195	-0.0067496	-7.3698	-0.0050658	687.36590313213	4.2105	0.13299	4.2105	4.1751	4.3081	0	465	34	1.01360860968299	0.0221639917190946	1.01360860968299	410.063458536829	0	8.96661986933594						276	16	4	NaN	NaN	NaN	0.016817	1	14577	72.042	56.162	1	79079			16845	780	14196	14602	16845	16845		
QVSSECQGEMLDYR	14	Unmodified	_QVSSECQGEMLDYR_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.363986	1700.71342	2.1353	0.0018179	0.87146	0.00074193	3.0067	0.0025598	851.866722934538	7.3408	0.062066	7.3408	7.3053	7.3674	0	384	31	1.06790610341098	0.0200727492241548	1.06790610341098	431.198153147554	0	8.10495638746107						148	8	4	NaN	NaN	NaN	0.0034859	1	24505	62.454	56.756	1	39478			16846	2441	14197	14603	16846	16846		
QVSTEEAQAWCR	12	Unmodified	_QVSTEEAQAWCR_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.83044	1463.64633	1.2156	0.0008908	0.2728	0.00019991	1.4884	0.0010907	732.830535168599	6.321	0.19507	6.321	6.2767	6.4717	0	498	37	0.991429299781895	0.0242106659523326	0.991429299781895	400.842097319728	0	9.7885488354795						299	23	4	NaN	NaN	NaN	0.00068086	1	17374	87.895	83.367	1	70912			16847	1181	14198	14604	16847	16847		
QVTPDGESDEVGVIPSK	17	Unmodified	_QVTPDGESDEVGVIPSK_			0	0	0	Q12959	Q12959	Q12959	DLG1	Disks large homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.933613	1755.85267	2.9199	0.0025664	-1.0721	-0.00094231	1.8478	0.0016241	879.433969636948	8.1036	0.088759	8.1036	8.068	8.1567	0	333	34	1.10198982404297	0.0220298733175506	1.10198982404297	444.847485790605	0	8.89294396716303						164	11	3	NaN	NaN	NaN	0.070191	1	26046	21.668	15.64	1	31112			16848	1610	14199	14605	16848	16848		
QVTQLAIDTEER	12	Unmodified	_QVTQLAIDTEER_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.862263	1401.70997	2.3272	0.0016334	5.1382	0.0036063	7.4654	0.0052397	701.866411175564	7.66	0.35478	7.66	7.4738	7.8285	0	480	82	1.00353128488872	0.0544326408515292	1.00353128488872	405.90283914253	0	22.016616518449						972	41	3	NaN	NaN	NaN	0.00066471	1	15508	95.138	69.281	1	428710			16849	1544	14200	14606	16849	16849		
QVTSNSLSGTQEDGLDDPR	19	Unmodified	_QVTSNSLSGTQEDGLDDPR_			0	0	0	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.9667	2017.91886	2.4682	0.0024928	-1.0907	-0.0011016	1.3774	0.0013912	1010.46735523391	6.9239	0.062017	6.9239	6.8974	6.9594	0	276	31	1.13998907770044	0.0199734753997438	1.13998907770044	459.718390842865	0	8.05461574143487						95	8	2	NaN	NaN	NaN	0.002364	1	31948	48.892	48.457	1	23984			16850	912	14201	14607	16850	16850		
QVTSNSLSGTQEDGLDDPRLEK	22	Unmodified	_QVTSNSLSGTQEDGLDDPRLEK_			0	0	1	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.054102	2388.14048	1.5481	0.0012339	0.90519	0.00072149	2.4533	0.0019554	797.389561218973	7.8818	0.070934	7.8818	7.8463	7.9172	0	486	28	0.999498404980629	0.01814921540488	0.999498404980629	603.952682603682	0	10.9667682072406						163	9	4	NaN	NaN	NaN	0.00039842	1	36287	39.483	38.232	1	38893			16851	912	14202	14608	16851	16851		
QVVESAYEVIK	11	Unmodified	_QVVESAYEVIK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.84281	1263.67107	2.1305	0.0013483	1.8531	0.0011727	3.9836	0.002521	632.844120000668	9.1504	0.38134	9.1504	9.0883	9.4696	0	495	70	0.993446994398923	0.0464005903678208	0.993446994398923	402.252514173522	0	18.7878711595324						1665	44	5	NaN	NaN	NaN	3.119E-05	1	11333	121.8	75.35	1	2997000			16852	471	14203	14609	16852	16852		
QVVNFGPGPAK	11	Unmodified	_QVVNFGPGPAK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.306198	1112.59784	1.0062	0.00056076	-1.0198	-0.00056832	-0.013549	-7.5509E-06	557.305827127265	6.7377	0.20393	6.7377	6.6757	6.8796	0	648	55	0.890187667287968	0.0365784873736561	0.890187667287968	360.970765725215	0	14.8325629319996						532	24	4	NaN	NaN	NaN	0.0050296	1	7060	79.059	51.322	1	297220			16853	3450	14204	14610	16853	16853		
QVVNQVWEAADVLIK	15	Unmodified	_QVVNQVWEAADVLIK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.472512	1710.93047	1.6107	0.0013795	0.53719	0.00046009	2.1478	0.0018396	856.97476854847	17.867	0.16843	17.867	17.787	17.956	0	291	40	1.12999890578964	0.0259851749816993	1.12999890578964	456.247904435718	0	10.4917638159224						395	20	4	NaN	NaN	NaN	9.2443E-12	1	24798	140.01	127.99	1	102270			16854	2149	14205	14611	16854	16854		
QVVQGLLSETYLEAHR	16	Unmodified	_QVVQGLLSETYLEAHR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.99513	1841.96356	0.83092	0.00051101	-0.0075824	-4.6631E-06	0.82333	0.00050635	615.32962489531	12.476	0.22166	12.476	12.396	12.618	0	573	46	0.940896116921038	0.0303829256271585	0.940896116921038	569.515557339744	0	18.3904987075372						405	26	4	NaN	NaN	NaN	1.9676E-07	1	28287	144.51	133.31	1	118430			16855	952	14206	14612	16855	16855		
QVVQGLLSETYLEAHR	16	Unmodified	_QVVQGLLSETYLEAHR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.989057	1841.96356	1.7851	0.0016458	2.7267	0.002514	4.5118	0.0041598	921.994088988943	12.467	0.133	12.467	12.423	12.556	0	171	52	1.20972836110953	0.0337897172226653	1.20972836110953	488.160105888292	0	13.6351204680555						338	16	4	NaN	NaN	NaN	1.2495E-12	1	28288	122.2	115.82	1	89579			16856	952	14206	14612	16856	16856		
QWALEDFEIGRPLGK	15	Unmodified	_QWALEDFEIGRPLGK_			0	0	1	O14965	O14965	O14965	AURKA	Aurora kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.9773	1757.91007	-0.053799	-3.1579E-05	-3.2002	-0.0018784	-3.254	-0.00191	586.976503731855	15.508	0.062071	15.508	15.482	15.544	0	660	22	0.882057989648486	0.0142318728029025	0.882057989648486	534.091950365193	0	8.61749317148724						94	8	3	NaN	NaN	NaN	0.011461	1	26091	36.952	30.205	1	19989			16857	130	14207	14613	16857	16857		
QWCNCAFLESSAK	13	Unmodified	_QWCNCAFLESSAK_			0	0	0	P62834	P62834	P62834	RAP1A	Ras-related protein Rap-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.847775	1599.681	1.7331	0.0013879	4.7331	0.0037905	6.4661	0.0051784	801.353282742303	10.17	0.062077	10.17	10.143	10.206	0	393	22	1.0618830335572	0.0140577073592631	1.0618830335572	428.984972659503	0	5.67910496410059						82	8	2	NaN	NaN	NaN	0.010489	1	21562	46.068	40.572	1	43751			16858	1401	14208	14614	16858	16858		
QWDSVVLER	9	Unmodified	_QWDSVVLER_			0	0	0	Q9BRX2	Q9BRX2	Q9BRX2	PELO	Protein pelota homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	377.864617	1130.57202	-0.68518	-0.0002589	-1.4713	-0.00055597	-2.1565	-0.00081487	377.863919608867	6.0461	0.062074	6.0461	6.0195	6.0815	0	885	16	0.728786607772777	0.0102722617102058	0.728786607772777	443.193049402878	0	6.24681483311502						67	8	2	NaN	NaN	NaN	0.064544	1	7540	23.575	0	1	13701			16859	2716	14209	14615	16859	16859		
QWELLLEK	8	Unmodified	_QWELLLEK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.797675	1057.5808	-0.016281	-8.6259E-06	0.59903	0.00031737	0.58275	0.00030874	529.79778534797	13.673	0.14186	13.673	13.629	13.77	0	639	31	0.896281965493857	0.0203072864196308	0.896281965493857	363.673246284316	0	8.23983641284491						273	17	3	NaN	NaN	NaN	0.0024796	1	5661	74.486	39.555	1	99232			16860	1703	14210	14616	16860	16860		
QWFINITDIK	10	Unmodified	_QWFINITDIK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.348063	1276.68157	-0.19851	-0.00012692	-0.029553	-1.8895E-05	-0.22807	-0.00014581	639.34807977008	16.803	0.12412	16.803	16.759	16.883	0	507	34	0.985374541851584	0.0222038520438094	0.985374541851584	398.939983882644	0	8.9894796346627						288	15	3	NaN	NaN	NaN	4.9396E-05	1	11680	100.84	78.792	1	87888			16861	3037	14211	14617	16861	16861		
QWLIDTLYAFNSGNVER	17	Unmodified	_QWLIDTLYAFNSGNVER_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.50507	2024.99559	0.62799	0.00063647	-0.24387	-0.00024717	0.38411	0.0003893	1014.00660005299	19.188	0.097522	19.188	19.153	19.25	0	192	37	1.1958073123591	0.0238794042896202	1.1958073123591	482.216447822111	0	9.62951254239442						305	12	5	NaN	NaN	NaN	8.1031E-14	1	32059	126.63	113.28	1	65458			16862	3300	14212	14618	16862	16862		
QWLMTEALVNNPK	13	Unmodified	_QWLMTEALVNNPK_			0	0	0	P29084	P29084	P29084	GTF2E2	Transcription initiation factor IIE subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.400501	1542.78645	2.4097	0.0018613	1.3135	0.0010145	3.7232	0.0028758	772.401573115294	13.886	0.088669	13.886	13.841	13.93	0	357	28	1.08596037261705	0.018041831774515	1.08596037261705	438.850719095954	0	7.29093901370766						179	11	3	NaN	NaN	NaN	0.00035752	1	19823	58.889	50.888	1	40397			16863	882	14213	14619	16863	16863		
QWLQEIDR	8	Unmodified	_QWLQEIDR_			0	0	0	P62820;Q9H0U4;Q92928	P62820;Q9H0U4	P62820	RAB1A;RAB1B;RAB1C	Ras-related protein Rab-1A;Ras-related protein Rab-1B;Putative Ras-related protein Rab-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.28018	1086.54581	1.3662	0.0007436	1.3408	0.00072975	2.707	0.0014733	544.280686392949	9.7889	0.23054	9.7889	9.7179	9.9484	0	630	58	0.902373728295776	0.0385918846730076	0.902373728295776	366.019531388784	0	15.6535846517844						662	27	3	NaN	NaN	NaN	0.00029927	1	6378	125.5	64.796	1	333370			16864	1398;2850	14214	14620	16864	16864		
QWLQEVK	7	Unmodified	_QWLQEVK_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.75581	929.497067	0.48176	0.00022438	-0.83784	-0.00039023	-0.35608	-0.00016584	465.755653417844	7.3762	0.23941	7.3762	7.3142	7.5536	0	696	67	0.857641857947968	0.0447815756398717	0.857641857947968	348.61041821082	0	18.2026141416507						694	28	3	NaN	NaN	NaN	0.002851	1	2868	117.18	74.948	1	268640			16865	482	14215	14621	16865	16865		
QWVIPWHLNK	10	Unmodified	_QWVIPWHLNK_			0	0	0	Q9HD33	Q9HD33	Q9HD33	MRPL47	39S ribosomal protein L47, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.911902	1319.71388	-3.065	-0.0013514	-0.69913	-0.00030826	-3.7641	-0.0016596	440.911512076711	13.762	0.062063	13.762	13.726	13.788	0	777	16	0.802556497112065	0.010219444721198	0.802556497112065	487.212090564482	0	6.20397074217163						81	8	3	NaN	NaN	NaN	0.042553	1	12982	17.395	6.0354	1	15865			16866	2969	14216	14622	16866	16866		
QWYESHYALPLGR	13	Unmodified	_QWYESHYALPLGR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.603685	1618.78923	1.2389	0.00066975	-0.044909	-2.4278E-05	1.194	0.00064547	540.603732842306	11.385	0.15966	11.385	11.323	11.483	0	621	88	0.908462957275599	0.0588789330663351	0.908462957275599	550.449646435408	0	35.6755194356549						1136	19	5	NaN	NaN	NaN	9.0159E-05	1	22152	87.895	81.148	1	804030			16867	1370	14217	14623	16867	16867		
QWYESHYALPLGR	13	Unmodified	_QWYESHYALPLGR_			0	0	0	P62241	P62241	P62241	RPS8	40S ribosomal protein S8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.401889	1618.78923	3.1039	0.0025154	-0.58014	-0.00047015	2.5238	0.0020453	810.401716435325	11.385	0.22175	11.385	11.287	11.509	0	336	40	1.09998710857178	0.0260317206932301	1.09998710857178	444.333444403353	0	10.5153633431098						636	26	5	NaN	NaN	NaN	6.6832E-33	1	22153	200.06	171.73	1	261160			16868	1370	14217	14623	16868	16868		
QYAGLDHELAFSR	13	Unmodified	_QYAGLDHELAFSR_			0	0	0	Q99720	Q99720	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.91604	1505.72629	-0.58627	-0.00029485	2.1986	0.0011057	1.6124	0.00081089	503.251956527757	9.4608	0.19508	9.4608	9.3898	9.5849	0	702	46	0.853568545818287	0.030556215070185	0.853568545818287	517.51732711672	0	18.5261872961427						361	23	4	NaN	NaN	NaN	0.0032937	1	18673	61.577	43.847	1	126890			16869	2668	14218	14624	16869	16869		
QYAGLDHELAFSR	13	Unmodified	_QYAGLDHELAFSR_			0	0	0	Q99720	Q99720	Q99720	SIGMAR1	Sigma non-opioid intracellular receptor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.870422	1505.72629	1.2247	0.0009233	1.391	0.0010486	2.6158	0.0019719	753.872314722488	9.4608	0.14188	9.4608	9.4076	9.5494	0	405	58	1.05384839605172	0.0381987855157915	1.05384839605172	425.967063158488	0	15.440004979221						347	17	4	NaN	NaN	NaN	0.043048	1	18675	47.361	40.221	1	81604			16870	2668	14218	14624	16870	16870		
QYASYEFVQR	10	Unmodified	_QYASYEFVQR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.809302	1289.60405	1.6735	0.0010808	2.0339	0.0013135	3.7075	0.0023943	646.814399420759	7.864	0.088662	7.864	7.8374	7.9261	0	543	31	0.961130371139249	0.0202230534711471	0.961130371139249	389.082716679959	0	8.18665273764202						215	11	3	NaN	NaN	NaN	0.0089179	1	12046	49.96	46.067	1	80626			16871	1737	14219	14625	16871	16871		
QYDAYGSAGFDPGASGSQHSYWK	23	Unmodified	_QYDAYGSAGFDPGASGSQHSYWK_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.024365	2478.05127	1.4887	0.0012312	0.82725	0.00068415	2.316	0.0019154	827.359265494286	9.9396	0.10638	9.9396	9.9041	10.01	0	546	46	0.959108205975751	0.0303366841243174	0.959108205975751	579.425060487575	0	18.3272699828924						350	13	4	NaN	NaN	NaN	2.5801E-13	1	36720	132.4	130.55	1	79894			16872	2520	14220	14626	16872	16872		
QYELVVHTDIDAAK	14	Unmodified	_QYELVVHTDIDAAK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.41212	1600.80969	1.8953	0.0015189	-0.03507	-2.8106E-05	1.8603	0.0014908	801.41184725454	9.0174	0.11529	9.0174	8.973	9.0883	0	261	22	1.14997238118939	0.0139708605655524	1.14997238118939	464.568967991617	0	5.64398622180869						152	14	3	NaN	NaN	NaN	2.1201E-11	1	21612	143.22	113.46	1	31826			16873	728	14221	14627	16873	16873		
QYEMGECTR	9	Unmodified	_QYEMGECTR_			0	0	0	Q01081;Q8WU68	Q01081	Q01081	U2AF1;U2AF1L4	Splicing factor U2AF 35 kDa subunit;Splicing factor U2AF 26 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.236798	1172.45904	1.7015	0.00099916	1.028	0.00060369	2.7295	0.0016028	587.237531572941	3.5012	0.20395	3.5012	3.4746	3.6785	0	633	37	0.900343422309015	0.024365365507813	0.900343422309015	364.860736500852	0	9.87397140248322						331	24	4	NaN	NaN	NaN	0.00061928	1	8661	91.783	73.38	1	87983			16874	1510	14222	14628	16874	16874		
QYEQQTYQVIPEVIK	15	Unmodified	_QYEQQTYQVIPEVIK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.485816	1864.95708	2.8234	0.0026356	-0.94169	-0.00087905	1.8817	0.0017565	933.98632498473	12.857	0.19509	12.857	12.768	12.963	0	207	82	1.18585551256002	0.0538136297167064	1.18585551256002	478.482640871324	0	21.7133431425677						867	23	3	NaN	NaN	NaN	0.036659	1	28814	50.116	41.31	1	402430			16875	3329	14223	14629	16875	16875		
QYIISEELISEGK	13	Unmodified	_QYIISEELISEGK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.895771	1507.77699	1.8181	0.0013725	0.57438	0.0004336	2.3925	0.0018061	754.896101596146	12.644	0.31926	12.644	12.591	12.91	0	408	43	1.0518390438467	0.028132878019673	1.0518390438467	425.149616404682	0	11.3712096621572						579	37	5	NaN	NaN	NaN	4.4562E-05	1	18733	101.64	63.894	1	543120			16876	3264	14224	14630	16876	16876		
QYLFSLYECR	10	Unmodified	_QYLFSLYECR_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.826637	1377.63872	1.2288	0.00084764	1.1807	0.00081448	2.4095	0.0016621	689.827523087554	13.788	0.11526	13.788	13.744	13.859	0	465	31	1.01360860968299	0.0201476911078267	1.01360860968299	410.048848269687	0	8.15061894219855						266	14	3	NaN	NaN	NaN	0.00070422	1	14727	98.009	78.753	1	86385			16877	1790	14225	14631	16877	16877		
QYLLCPGSSGVENTELVK	18	Unmodified	_QYLLCPGSSGVENTELVK_			0	0	0	Q9NVU0	Q9NVU0	Q9NVU0	POLR3E	DNA-directed RNA polymerase III subunit RPC5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	997.498597	1992.98264	1.4052	0.0014017	-3.5101	-0.0035013	-2.1048	-0.0020996	997.492985000378	12.086	0.13301	12.086	12.024	12.157	0	198	43	1.1918274123006	0.0278516583469064	1.1918274123006	480.664102328345	0	11.2325763105496						267	16	4	NaN	NaN	NaN	0.0034847	1	31506	16.131	13.742	1	57771			16878	3075	14226	14632	16878	16878		
QYLSGELEVELTPQGTLAER	20	Unmodified	_QYLSGELEVELTPQGTLAER_			0	0	0	P55809	P55809	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1117.07097	2232.12739	0.79901	0.00089255	-0.73177	-0.00081743	0.067242	7.5114E-05	1117.57128798847	15.083	0.11527	15.083	15.047	15.163	0	84	43	1.26725910986255	0.0277183202097289	1.26725910986255	510.706786995979	0	11.170512916472						273	14	3	NaN	NaN	NaN	3.24E-07	1	35008	88.796	83.18	1	55536			16879	1279	14227	14633	16879	16879		
QYMEEENYDK	10	Unmodified	_QYMEEENYDK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.771725	1347.5289	2.3793	0.0016055	-0.29657	-0.00020012	2.0827	0.0014054	674.771908050164	4.4677	0.14188	4.4677	4.4411	4.5829	0	540	28	0.963152256458504	0.0181969696158962	0.963152256458504	389.723551325509	0	7.36310129007632						207	17	3	NaN	NaN	NaN	0.0095269	1	13814	39.01	32.319	1	49735			16880	389	14228	14634	16880	16880		
QYMEGFNDELEAFK	14	Unmodified	_QYMEGFNDELEAFK_			0	0	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.879795	1719.74504	2.4576	0.0021157	0.70745	0.00060903	3.1651	0.0027248	860.880330013732	14.666	0.15075	14.666	14.622	14.772	0	336	61	1.09998710857178	0.0400350261714058	1.09998710857178	444.112059210465	0	16.1638602625202						670	18	5	NaN	NaN	NaN	7.5313E-17	1	25042	198.33	195.66	1	258770			16881	1888	14229	14635	16881	16881		
QYMEGFNDELEAFK	14	Oxidation (M)	_QYM(Oxidation (M))EGFNDELEAFK_	QYM(1)EGFNDELEAFK	QYM(110)EGFNDELEAFK	0	1	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.877253	1735.73995	2.7558	0.0023944	1.2806	0.0011127	4.0364	0.0035071	869.380086701619	12.813	0.11528	12.813	12.76	12.875	0	324	34	1.1079963157843	0.022017741139529	1.1079963157843	447.312756789809	0	8.88885310095617						306	14	4	NaN	NaN	NaN	2.3378E-05	1	25484	106.11	103.81	1	82897			16882	1888	14229	14636	16882	16882	580	
QYMFSSLK	8	Unmodified	_QYMFSSLK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.249503	1002.48445	0.23418	0.00011762	1.2751	0.00064044	1.5093	0.00075806	502.249998405991	9.1681	0.15084	9.1681	9.0794	9.2303	0	675	31	0.871889544407995	0.0203411270160542	0.871889544407995	354.025642744464	0	8.25939548443029						248	18	3	NaN	NaN	NaN	0.040891	1	4349	33.396	20.843	1	132750			16883	674	14230	14637	16883	16883		
QYPYNNLYLER	11	Unmodified	_QYPYNNLYLER_			0	0	0	O95169	O95169	O95169	NDUFB8	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.862066	1471.70958	1.3545	0.00099811	0.63627	0.00046884	1.9908	0.0014669	736.861197850964	10.25	0.23941	10.25	10.161	10.401	0	435	49	1.03374239103424	0.0321962682472983	1.03374239103424	417.928143171921	0	13.0165181599995						490	28	3	NaN	NaN	NaN	0.05038	1	17639	43.168	29.895	1	123710			16884	409	14231	14638	16884	16884		
QYQDFLEDLEEDEAIRK	17	Unmodified	_QYQDFLEDLEEDEAIRK_			0	0	1	Q96D46	Q96D46	Q96D46	NMD3	60S ribosomal export protein NMD3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.339291	2139.99604	0.67601	0.0004829	1.1258	0.0008042	1.8018	0.0012871	714.674404670328	15.234	0.10639	15.234	15.198	15.304	0	576	28	0.938871150116794	0.0182272273449463	0.938871150116794	567.698526930568	0	11.021288823783						136	13	2	NaN	NaN	NaN	1.2102E-06	1	33874	126.17	119.97	1	58212			16885	2501	14232	14639	16885	16885		
QYQLLFTQGSGENK	14	Unmodified	_QYQLLFTQGSGENK_			0	0	0	Q8TCT9	Q8TCT9	Q8TCT9	HM13	Minor histocompatibility antigen H13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.901919	1611.78929	2.4549	0.0019808	-1.5597	-0.0012585	0.89515	0.0007223	806.901273549967	10.773	0.14189	10.773	10.729	10.871	0	396	40	1.05987478976334	0.0261071745349262	1.05987478976334	428.146083499432	0	10.5462311551543						406	17	4	NaN	NaN	NaN	7.9025E-17	1	21951	139.78	112.19	1	129760			16886	2346	14233	14640	16886	16886		
QYSHHSSVQDAVSQLDSELMDITK	24	Oxidation (M)	_QYSHHSSVQDAVSQLDSELM(Oxidation (M))DITK_	QYSHHSSVQDAVSQLDSELM(1)DITK	QYSHHSSVQDAVSQLDSELM(44)DITK	0	1	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	912.092339	2733.25519	0.25198	0.00022983	0.073243	6.6804E-05	0.32522	0.00029663	912.426940766759	16.51	0.0532	16.51	16.466	16.519	0	474	22	1.00756305028564	0.0141102047023627	1.00756305028564	608.381036308119	0	8.5199441929808						41	7	2	NaN	NaN	NaN	0.00033874	1	37704	43.727	38.397	1	9121.7			16887	352	14234	14641	16887	16887	58	
QYTSPEEIDAQLQAEK	16	Unmodified	_QYTSPEEIDAQLQAEK_			0	0	0	Q13442	Q13442	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.444345	1848.87414	2.4207	0.0022403	-0.80947	-0.00074912	1.6113	0.0014911	925.443589134456	10.241	0.33694	10.241	10.055	10.392	1.7764E-15	297	55	1.12600091227925	0.0359918600529883	1.12600091227925	454.360996195946	0	14.5233429300856						1369	39	5	NaN	NaN	NaN	1.9117E-17	1	28453	191.95	176.33	1	409670			16888	1669	14235	14642	16888	16888		
QYYAYLTDTQCK	12	Unmodified	_QYYAYLTDTQCK_			0	0	0	P48651	P48651	P48651	PTDSS1	Phosphatidylserine synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.350674	1552.68679	1.9759	0.001536	1.5361	0.0011941	3.5121	0.0027301	777.351407848337	8.343	0.11533	8.343	8.3076	8.4229	0	396	28	1.05987478976334	0.0180741958638628	1.05987478976334	428.28490455871	0	7.30360352495825						244	14	4	NaN	NaN	NaN	5.4675E-05	1	20135	94.804	89.653	1	57069			16889	1114	14236	14643	16889	16889		
QYYIGDIHPSDLKPESGSK	19	Unmodified	_QYYIGDIHPSDLKPESGSK_			0	0	1	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	534.266739	2133.03785	0.68202	0.00036438	0.49694	0.0002655	1.179	0.00062988	534.517693501502	8.9642	0.18636	8.9642	8.8842	9.0706	0	657	37	0.884090832094921	0.0243958062014034	0.884090832094921	712.779500071464	0	19.6686018187435						663	22	5	NaN	NaN	NaN	0.0697	1	33780	20.734	19.463	1	379430			16890	187	14237	14644	16890	16890		
QYYIGDIHPSDLKPESGSK	19	Unmodified	_QYYIGDIHPSDLKPESGSK_			0	0	1	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.019893	2133.03785	1.3159	0.00093693	-0.12135	-8.6405E-05	1.1945	0.00085052	712.353987201206	8.9642	0.11521	8.9642	8.9021	9.0174	0	597	85	0.924688525662974	0.0567109047160032	0.924688525662974	559.134605675606	0	34.2915786947339						770	14	4	NaN	NaN	NaN	3.5991E-07	1	33781	91.032	76.057	1	166510			16891	187	14237	14644	16891	16891		
QYYTLLNQAPDMLHR	15	Unmodified	_QYYTLLNQAPDMLHR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.645444	1861.9145	1.0573	0.00065726	-0.64151	-0.00039879	0.41578	0.00025846	621.979411175049	13.017	0.1862	13.017	12.963	13.15	0	576	46	0.938871150116794	0.0303703038284173	0.938871150116794	568.244400854801	0	18.3813882241567						662	22	4	NaN	NaN	NaN	1.7954E-09	1	28734	208.63	204.64	1	534870			16892	1649	14238	14645	16892	16892		
QYYTLLNQAPDMLHR	15	Unmodified	_QYYTLLNQAPDMLHR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.964528	1861.9145	1.6036	0.0014945	0.2048	0.00019086	1.8084	0.0016854	931.964594818514	13.017	0.15075	13.017	12.972	13.123	0	180	82	1.203763835057	0.0537397634963519	1.203763835057	485.714353220571	0	21.6838001846276						1208	18	5	NaN	NaN	NaN	2.0265E-17	1	28735	169.57	159.09	1	386620			16893	1649	14238	14645	16893	16893		
QYYTLLNQAPDMLHR	15	Oxidation (M)	_QYYTLLNQAPDM(Oxidation (M))LHR_	QYYTLLNQAPDM(1)LHR	QYYTLLNQAPDM(47)LHR	0	1	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	626.977082	1877.90942	1.1159	0.00069965	1.439	0.00090224	2.5549	0.0016019	627.312205563994	10.525	0.08873	10.525	10.48	10.569	0	588	34	0.93076847747433	0.0222900711025618	0.93076847747433	563.304865279691	0	13.4900416197748						194	11	5	NaN	NaN	NaN	0.0097923	1	29096	47.361	45.12	1	41538			16894	1649	14238	14646	16894	16894	554	
RAAEDDEDDDVDTK	14	Unmodified	_RAAEDDEDDDVDTK_			0	0	1	P06454	P06454	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.888544	1592.6438	-0.82437	-0.00043847	1.3216	0.00070292	0.49719	0.00026445	531.88958410857	1.9847	0.18631	1.9847	1.9581	2.1444	0	831	19	0.76571780291124	0.0122949627621918	0.76571780291124	464.023011543204	0	7.45071568929563						168	22	3	NaN	NaN	NaN	9.9371E-06	1	21340	141.44	135.58	1	29359			16895	539	14239	14647	16895	16895		
RAAEDDEDDDVDTK	14	Unmodified	_RAAEDDEDDDVDTK_			0	0	1	P06454	P06454	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.329178	1592.6438	2.237	0.0017836	-1.3139	-0.0010476	0.92311	0.00073602	797.328339688154	1.9758	0.1597	1.9758	1.9492	2.1089	0	435	34	1.03374239103424	0.0221364589535984	1.03374239103424	417.63243177624	0	8.94314024837155						196	19	2	NaN	NaN	NaN	0.030095	1	21341	30.875	29.501	1	45634			16896	539	14239	14647	16896	16896		
RAEDGSVIDYELIDQDAR	18	Unmodified	_RAEDGSVIDYELIDQDAR_			0	0	1	P07355	P07355	P07355	ANXA2	Annexin A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.999269	2063.97598	1.5597	0.0010746	1.6929	0.0011664	3.2526	0.002241	689.33494941755	11.429	0.24836	11.429	11.358	11.607	0	531	151	0.969216233931596	0.101185570252725	0.969216233931596	586.186045200686	0	61.1974574726398						1676	29	6	NaN	NaN	NaN	3.5204E-10	1	32773	191.95	185.09	1	1651800			16897	558	14240	14648	16897	16897		
RAEISNAIDQYVTGTIGEDEDLIK	24	Unmodified	_RAEISNAIDQYVTGTIGEDEDLIK_			0	0	1	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	884.111728	2649.31335	0.57237	0.00050604	-0.079198	-7.002E-05	0.49317	0.00043602	884.444932741781	17.043	0.17734	17.043	16.954	17.131	0	483	64	1.00151498427745	0.0423540410957373	1.00151498427745	604.826095651934	0	25.5780789235996						769	21	5	NaN	NaN	NaN	5.6724E-10	1	37437	100.23	87.358	1	200570			16898	929	14241	14649	16898	16898		
RAGGEESQFEMDI	13	Unmodified	_RAGGEESQFEMDI_			0	0	1	Q13541	Q13541	Q13541	EIF4EBP1	Eukaryotic translation initiation factor 4E-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.82228	1467.63001	1.7166	0.0012614	0.74919	0.00055052	2.4658	0.0018119	734.82222288872	10.915	0.41677	10.915	10.844	11.261	0	501	70	0.98941132619024	0.0463813530648067	0.98941132619024	400.016045849313	0	18.7518425987349						1216	48	5	NaN	NaN	NaN	0.015066	1	17496	79.311	62.659	1	426970			16899	1680	14242	14650	16899	16899		
RALEQQVEEMK	11	Unmodified	_RALEQQVEEMK_			0	0	1	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.848101	1359.68165	2.0516	0.0013968	-2.8131	-0.0019153	-0.76149	-0.00051846	681.347561504597	5.1947	0.15074	5.1947	5.0706	5.2213	0	495	31	0.993446994398923	0.0201699767195437	0.993446994398923	401.945344337572	0	8.16070538592044						139	18	2	NaN	NaN	NaN	0.032406	1	14188	35.33	30.501	1	57212			16900	972	14243	14651	16900	16900		
RAPFDLFENK	10	Unmodified	_RAPFDLFENK_			0	0	1	P08238;Q58FF7	P08238	P08238	HSP90AB1;HSP90AB3P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.822212	1235.62987	1.3087	0.00080988	-0.34498	-0.00021348	0.96377	0.0005964	618.820786064894	11.42	0.22174	11.42	11.296	11.518	0	561	43	0.948993180460448	0.0283318814612601	0.948993180460448	384.347160296675	0	11.474558942788						444	26	4	NaN	NaN	NaN	0.011728	1	10490	64.064	34.755	1	209980			16901	579	14244	14652	16901	16901		
RCEAFGWHAIIVDGHSVEELCK	22	Unmodified	_RCEAFGWHAIIVDGHSVEELCK_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	654.063879	2612.22641	0.64491	0.00042181	-0.067483	-4.4138E-05	0.57742	0.00037767	654.314714562535	12.05	0.18625	12.05	11.988	12.174	0	561	64	0.948993180460448	0.0425184363686346	0.948993180460448	764.198521155054	0	34.2389459310662						813	22	7	NaN	NaN	NaN	7.7195E-30	1	37288	195.74	181.74	1	404010			16902	888	14245	14653	16902	16902		
RCEAFGWHAIIVDGHSVEELCK	22	Unmodified	_RCEAFGWHAIIVDGHSVEELCK_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.749414	2612.22641	1.4353	0.0012512	0.59826	0.00052154	2.0335	0.0017727	872.084486042753	12.041	0.062057	12.041	12.015	12.077	0	390	109	1.06389100039157	0.0722919023511401	1.06389100039157	642.543277769442	0	43.6611230622252						350	8	2	NaN	NaN	NaN	0.00036982	1	37289	32.113	30.591	1	140600			16903	888	14245	14653	16903	16903		
RDEFEFLEK	9	Unmodified	_RDEFEFLEK_			0	0	1	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.798403	1211.58225	1.4831	0.00089992	-0.82896	-0.00050301	0.65411	0.00039691	606.798168510116	9.7445	0.19509	9.7445	9.6913	9.8864	0	576	34	0.938871150116794	0.0222777233789591	0.938871150116794	380.331062668434	0	9.02457190797577						295	23	3	NaN	NaN	NaN	0.036157	1	9777	65.933	51.17	1	153030			16904	1745	14246	14654	16904	16904		
RDELLAQHAAGALGLPDLVAVLTR	24	Unmodified	_RDELLAQHAAGALGLPDLVAVLTR_			0	0	1	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	625.606503	2498.39691	-1.0307	-0.00064479	0.26946	0.00016858	-0.76119	-0.00047621	625.857199233672	19.259	0.062067	19.259	19.224	19.286	0	618	25	0.910492137470517	0.0162345681702797	0.910492137470517	733.371312723523	0	13.076407890368						85	8	3	NaN	NaN	NaN	0.00070261	1	36820	35.537	34.015	1	13295			16905	1298	14247	14655	16905	16905		
RDELLAQHAAGALGLPDLVAVLTR	24	Unmodified	_RDELLAQHAAGALGLPDLVAVLTR_			0	0	1	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.806245	2498.39691	0.12883	0.00010742	0.50835	0.00042386	0.63718	0.00053129	834.141775878991	19.25	0.088672	19.25	19.215	19.304	0	492	31	0.995464410099171	0.0201755538999089	0.995464410099171	601.361591247508	0	12.1880833452803						150	11	3	NaN	NaN	NaN	0.071176	1	36821	21.125	20.428	1	29908			16906	1298	14247	14655	16906	16906		
RDELTLEGIK	10	Unmodified	_RDELTLEGIK_			0	0	1	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.327328	1172.6401	2.7435	0.0016114	-1.2261	-0.00072011	1.5174	0.00089124	587.326631928918	7.7044	0.34595	7.7044	7.5979	7.9438	0	585	49	0.932794566565362	0.0324106998985512	0.932794566565362	378.010770123677	0	13.1342892294176						688	40	4	NaN	NaN	NaN	0.0032161	1	8679	106.35	88.883	1	482640			16907	1008	14248	14656	16907	16907		
RDFNHINVELSLLGK	15	Unmodified	_RDFNHINVELSLLGK_			0	0	1	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.656449	1753.94752	-0.70601	-0.00041348	-1.0018	-0.00058671	-1.7078	-0.0010002	585.655970770361	12.449	0.14186	12.449	12.414	12.556	0	717	31	0.84338031290707	0.0203835468475623	0.84338031290707	510.68136988013	0	12.3425902500002						295	17	4	NaN	NaN	NaN	3.2436E-06	1	26017	105.08	83.716	1	96281			16908	943	14249	14657	16908	16908		
RDHFEEAMR	9	Unmodified	_RDHFEEAMR_			0	0	1	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	397.517223	1189.52984	-1.0166	-0.00040413	2.9752	0.0011827	1.9585	0.00077854	397.518292669467	2.774	0.12412	2.774	2.7474	2.8715	0	837	16	0.761618911097395	0.0102493718011892	0.761618911097395	462.882970785457	0	6.22917787215039						97	15	2	NaN	NaN	NaN	0.035864	1	9138	37.722	36.22	1	22430			16909	1265	14250	14658	16909	16909		
RDNYVPEVSALDQEIIEVDPDTK	23	Unmodified	_RDNYVPEVSALDQEIIEVDPDTK_			0	0	1	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	882.436212	2644.28681	0.8663	0.00076445	-0.29236	-0.00025799	0.57394	0.00050646	882.770276770122	15.695	0.11526	15.695	15.659	15.775	0	513	46	0.981336640919867	0.0302863591438532	0.981336640919867	592.646049463308	0	18.2904523797325						504	14	5	NaN	NaN	NaN	3.5856E-09	1	37413	94.865	90	1	116830			16910	589	14251	14659	16910	16910		
RDVDFELIK	9	Unmodified	_RDVDFELIK_			0	0	1	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.811313	1133.60807	0.94954	0.00053916	0.11237	6.3802E-05	1.0619	0.00060296	567.811465483361	9.2479	0.14195	9.2479	9.2036	9.3455	0	600	34	0.922661313351899	0.0222962488144068	0.922661313351899	374.053950381188	0	9.03906972907822						284	17	3	NaN	NaN	NaN	0.030027	1	7638	53.517	40.689	1	121160			16911	1113	14252	14660	16911	16911		
REDEEESLNEVGYDDIGGCR	20	Unmodified	_REDEEESLNEVGYDDIGGCR_			0	0	1	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	781.332759	2340.97645	0.9182	0.00071742	-0.11848	-9.257E-05	0.79972	0.00062485	781.666931600873	9.0528	0.12415	9.0528	9.0085	9.1326	0	618	91	0.910492137470517	0.0608122213353296	0.910492137470517	550.234225292707	0	36.7504167446556						632	15	5	NaN	NaN	NaN	2.785E-07	1	35971	99.909	97.807	1	207490			16912	1265	14253	14661	16912	16912		
REDIFYTSK	9	Unmodified	_REDIFYTSK_			0	0	1	P42330;Q04828;P52895;P17516	P42330	P42330	AKR1C3;AKR1C1;AKR1C2;AKR1C4	Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C2;Aldo-keto reductase family 1 member C4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.793121	1157.57169	1.6965	0.00098359	-0.4082	-0.00023667	1.2883	0.00074692	579.794062545281	5.0529	0.23939	5.0529	4.9642	5.2036	0	621	40	0.908462957275599	0.0263830055416011	0.908462957275599	368.2062040436	0	10.6932112574703						591	28	4	NaN	NaN	NaN	0.072104	1	8270	52.591	39.317	1	186980			16913	1048	14254	14662	16913	16913		
REDLVEEIK	9	Unmodified	_REDLVEEIK_			0	0	1	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.806228	1129.5979	2.1144	0.0011963	-0.57409	-0.00032483	1.5403	0.0008715	565.805925505809	6.0727	0.28381	6.0727	6.0283	6.3121	0	582	28	0.934820374997243	0.0182322776363114	0.934820374997243	378.999495776856	0	7.39182009275959						457	33	4	NaN	NaN	NaN	0.00093283	1	7522	72.365	15.987	1	180510			16914	664	14255	14663	16914	16914		
REDLVVAPAGITLK	14	Unmodified	_REDLVVAPAGITLK_			0	0	1	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.627719	1480.86133	0.166	8.211E-05	0.065337	3.2317E-05	0.23134	0.00011443	494.627646436491	11.101	0.10643	11.101	11.057	11.163	0	705	40	0.851531465363931	0.0264894101708458	0.851531465363931	516.361102848845	0	16.0629425992938						303	13	4	NaN	NaN	NaN	0.0026156	1	17944	71.219	70.256	1	151420			16915	666	14256	14664	16915	16915		
REEEEFNTGPLSVLTQSVK	19	Unmodified	_REEEEFNTGPLSVLTQSVK_			0	0	1	P62316	P62316	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.702452	2162.08553	-0.16228	-0.00011712	-1.1936	-0.00086145	-1.3559	-0.00097857	722.035960609201	14.861	0.4434	14.861	14.586	15.03	0	648	67	0.890187667287968	0.0446822477654109	0.890187667287968	538.226113049559	0	27.0158230908346						1486	51	5	NaN	NaN	NaN	5.3636E-07	1	34210	86.952	79.962	1	596320			16916	1386	14257	14665	16916	16916		
REEMHLEDSANFIK	14	Unmodified	_REEMHLEDSANFIK_			0	0	1	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.610399	1717.80937	0.86156	0.0004942	2.6389	0.0015137	3.5005	0.0020079	573.61115165776	8.0148	0.097567	8.0148	7.9615	8.0591	0	618	25	0.910492137470517	0.0162323175227004	0.910492137470517	551.409568727043	0	9.83056836657465						141	12	3	NaN	NaN	NaN	0.0061686	1	24990	48.822	33.206	1	35905			16917	730	14258	14666	16917	16917		
REVDDLGPEVGDIK	14	Unmodified	_REVDDLGPEVGDIK_			0	0	1	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.393927	1540.7733	2.3247	0.0017932	-2.4162	-0.0018639	-0.091564	-7.0632E-05	771.391999480694	8.0325	0.13317	8.0325	7.9881	8.1213	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	421.00504439923	0	8.93956297306499						255	16	3	NaN	NaN	NaN	0.028433	1	19742	38.14	29.334	1	65745			16918	181	14259	14667	16918	16918		
RFDDAVVQSDMK	12	Unmodified	_RFDDAVVQSDMK_			0	0	1	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.837733	1409.66091	2.3864	0.0016844	0.52117	0.00036786	2.9076	0.0020523	705.83858383096	6.2589	0.3813	6.2589	6.1525	6.5338	0	489	76	0.997481546940468	0.050435430095882	0.997481546940468	403.433661241891	0	20.3987234473677						1685	44	6	NaN	NaN	NaN	6.6687E-16	1	15744	176.45	131.63	1	2694100			16919	640	14260	14668	16919	16919		
RFDDAVVQSDMK	12	Oxidation (M)	_RFDDAVVQSDM(Oxidation (M))K_	RFDDAVVQSDM(1)K	RFDDAVVQSDM(58)K	0	1	1	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.835191	1425.65583	2.9467	0.0021035	-1.6649	-0.0011885	1.2818	0.00091502	713.834237195702	4.4499	0.24825	4.4499	4.3613	4.6095	0	501	70	0.98941132619024	0.0464262587282713	0.98941132619024	400.126030365684	0	18.7751586402414						962	29	4	NaN	NaN	NaN	0.038989	1	16245	58.476	52.61	1	294230			16920	640	14260	14669	16920	16920	188	
RFDDPGLMLMGFK	13	Unmodified	_RFDDPGLMLMGFK_			0	0	1	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.58799	1525.74214	-0.71106	-0.00036235	-1.4443	-0.00073599	-2.1553	-0.0010983	509.587499083622	15.464	0.12427	15.464	15.411	15.535	-1.7764E-15	717	34	0.84338031290707	0.0224234600075238	0.84338031290707	511.279209958397	0	13.5936880926977						356	15	4	NaN	NaN	NaN	0.0002569	1	19292	99.174	88.924	1	104990			16921	673	14261	14670	16921	16921		
RFDEILEASDGIMVAR	16	Unmodified	_RFDEILEASDGIMVAR_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.976971	1820.90908	1.1391	0.00069257	0.016435	9.9918E-06	1.1556	0.00070256	608.311345258373	14.24	0.33695	14.24	14.178	14.515	0	570	70	0.942920803299286	0.0466000786079988	0.942920803299286	570.790347683867	0	28.2090234701425						936	39	5	NaN	NaN	NaN	1.0397E-06	1	27749	169.57	156.89	1	696930			16922	699	14262	14671	16922	16922		
RFDEILEASDGIMVAR	16	Unmodified	_RFDEILEASDGIMVAR_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.461818	1820.90908	2.2871	0.0020846	0.5507	0.00050194	2.8378	0.0025865	911.963763306972	14.249	0.46105	14.249	14.143	14.604	0	255	118	1.15396378101328	0.0777949942601568	1.15396378101328	465.697745058541	0	31.3952257426876						1660	53	6	NaN	NaN	NaN	0.004272	1	27751	77.696	70.49	1	1325900			16923	699	14262	14671	16923	16923		
RFDEILEASDGIMVAR	16	Oxidation (M)	_RFDEILEASDGIM(Oxidation (M))VAR_	RFDEILEASDGIM(1)VAR	RFDEILEASDGIM(69)VAR	0	1	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.308609	1836.904	0.75026	0.00046014	0.049038	3.0075E-05	0.7993	0.00049021	613.308866794884	12.573	0.26602	12.573	12.511	12.777	0	570	40	0.942920803299286	0.0263245737571987	0.942920803299286	570.752817385245	0	15.9343442055948						636	31	5	NaN	NaN	NaN	0.011495	1	28155	69.327	52.567	1	231370			16924	699	14262	14672	16924	16924	229	
RFDEILEASDGIMVAR	16	Oxidation (M)	_RFDEILEASDGIM(Oxidation (M))VAR_	RFDEILEASDGIM(1)VAR	RFDEILEASDGIM(41)VAR	0	1	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.459275	1836.904	2.026	0.0018628	1.5687	0.0014423	3.5947	0.0033051	919.462419485925	12.564	0.24829	12.564	12.511	12.76	-1.7764E-15	246	139	1.1599488233373	0.0917771855888088	1.1599488233373	468.082273932677	0	37.0354905847936						1160	29	5	NaN	NaN	NaN	0.016072	1	28157	41.317	30.346	1	338520			16925	699	14262	14672	16925	16925	229	
RFEELGVK	8	Unmodified	_RFEELGVK_			0	0	1	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.274367	976.53418	1.4327	0.000701	1.0645	0.00052083	2.4972	0.0012218	489.274876963696	4.8578	0.19506	4.8578	4.8135	5.0085	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	357.457468681167	0	8.25892663383456						405	23	4	NaN	NaN	NaN	0.0020506	1	3773	133.68	100.71	1	192640			16926	1545	14263	14673	16926	16926		
RFPELESLVPNALDYIR	17	Unmodified	_RFPELESLVPNALDYIR_			0	0	1	Q8WWY3	Q8WWY3	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.033585	2031.07893	-1.1999	-0.00081358	-0.24932	-0.00016905	-1.4492	-0.00098263	678.367606473331	18.648	0.088678	18.648	18.603	18.692	0	696	22	0.857641857947968	0.0142556031742478	0.857641857947968	518.761484183948	0	8.62278093364569						126	11	3	NaN	NaN	NaN	0.0029319	1	32177	53.051	46.846	1	21877			16927	2393	14264	14674	16927	16927		
RGFEVVYMTEPIDEYCVQQLK	21	Unmodified	_RGFEVVYMTEPIDEYCVQQLK_			0	0	1	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	868.753942	2603.24	1.7775	0.0015442	-0.48126	-0.0004181	1.2962	0.0011261	869.08807659816	15.056	0.15961	15.056	15.003	15.163	0	486	208	0.999498404980629	0.1387800818527	0.999498404980629	603.66402071828	0	83.8185851916759						2985	19	7	NaN	NaN	NaN	2.3607E-37	1	37254	276.47	266.96	1	1162900			16928	579	14265	14675	16928	16928		
RGFEVVYMTEPIDEYCVQQLK	21	Oxidation (M)	_RGFEVVYM(Oxidation (M))TEPIDEYCVQQLK_	RGFEVVYM(1)TEPIDEYCVQQLK	RGFEVVYM(86)TEPIDEYCVQQLK	0	1	1	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	874.08558	2619.23491	1.5428	0.0013486	0.17418	0.00015225	1.717	0.0015008	874.41998488325	13.371	0.062099	13.371	13.345	13.407	0	426	169	1.03977710643793	0.112687325504999	1.03977710643793	627.970656014278	0	68.0572146508338						861	8	4	NaN	NaN	NaN	1.1811E-05	1	37312	85.742	78.752	1	155500			16929	579	14265	14676	16929	16929	151	
RGFGFVTFDDHDPVDK	16	Unmodified	_RGFGFVTFDDHDPVDK_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	463.721967	1850.85876	-1.6701	-0.00077448	0.40266	0.00018672	-1.2675	-0.00058776	463.722281622405	11.075	0.079816	11.075	11.057	11.137	0	780	22	0.800512323802183	0.0143092140004129	0.800512323802183	646.030964415789	0	11.5478488536086						155	10	4	NaN	NaN	NaN	0.032242	1	28512	45.183	41.895	1	38542			16930	808	14266	14677	16930	16930		
RGFGFVTFDDHDPVDK	16	Unmodified	_RGFGFVTFDDHDPVDK_			0	0	1	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.960197	1850.85876	0.8988	0.00055542	0.30865	0.00019074	1.2075	0.00074616	618.294541731415	11.083	0.11527	11.083	11.039	11.154	0	642	31	0.894250814548268	0.020312920651839	0.894250814548268	541.262171466851	0	12.2947783350938						314	14	5	NaN	NaN	NaN	2.307E-06	1	28513	84.58	81.075	1	100030			16931	808	14266	14677	16931	16931		
RGLFDEEMNEILTDPSDDTK	20	Unmodified	_RGLFDEEMNEILTDPSDDTK_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.689883	2324.04782	0.51368	0.00039846	-0.91796	-0.00071205	-0.40427	-0.00031359	776.02353451865	15.42	0.097653	15.42	15.375	15.473	-1.7764E-15	612	46	0.914549654013882	0.0304334915876326	0.914549654013882	552.710032443836	0	18.3925454992566						429	12	5	NaN	NaN	NaN	1.929E-07	1	35845	64.21	59.612	1	109700			16932	1816	14267	14678	16932	16932		
RGPFELEAFYSDPQGVPYPEAK	22	Unmodified	_RGPFELEAFYSDPQGVPYPEAK_			0	0	1	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.072657	2496.19614	1.4134	0.0011775	0.37043	0.0003086	1.7838	0.0014861	833.407351947287	14.879	0.15961	14.879	14.826	14.985	0	426	121	1.03977710643793	0.0806020433921173	1.03977710643793	628.134023077269	0	48.6920566635514						1488	19	6	NaN	NaN	NaN	2.2761E-11	1	36809	102.1	98.344	1	388610			16933	2415	14268	14679	16933	16933		
RGYFNEELSEILSDPSDDTK	20	Unmodified	_RGYFNEELSEILSDPSDDTK_			0	0	1	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.360643	2314.0601	0.47955	0.00037039	0.20756	0.00016031	0.68712	0.0005307	772.695145502493	15.163	0.088682	15.163	15.127	15.216	0	609	28	0.916577990479294	0.0182524998058907	0.916577990479294	553.950058857943	0	11.0312198708706						227	11	4	NaN	NaN	NaN	0.0019762	1	35760	53.773	47.386	1	53726			16934	718	14269	14680	16934	16934		
RHVFGESDELIGQK	14	Unmodified	_RHVFGESDELIGQK_			0	0	1	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.915361	1613.81617	3.3506	0.002707	-2.3785	-0.0019216	0.97207	0.00078535	807.91290189805	6.0461	0.062068	6.0461	6.0106	6.0727	0	351	28	1.08996939197032	0.0180393458304879	1.08996939197032	440.29836355733	0	7.28708026786944						145	8	3	NaN	NaN	NaN	0.024608	1	22007	35.845	26.103	1	29449			16935	1303	14270	14681	16935	16935		
RIEDNLPAGEE	11	Unmodified	_RIEDNLPAGEE_			0	0	1	O43617	O43617	O43617	TRAPPC3	Trafficking protein particle complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.801674	1241.58879	1.1798	0.00073359	1.9402	0.0012064	3.12	0.00194	621.802597431361	5.8509	0.097544	5.8509	5.8066	5.9041	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.199145351829	0	10.6787638238567						286	12	4	NaN	NaN	NaN	2.6461E-05	1	10664	121.8	111.09	1	108290			16936	212	14271	14682	16936	16936		
RIEEQSLHDVLFELSK	16	Unmodified	_RIEEQSLHDVLFELSK_			0	0	1	P98196	P98196	P98196	ATP11A	Probable phospholipid-transporting ATPase IH	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.34594	1942.01599	0.034173	2.2156E-05	-1.507	-0.00097707	-1.4728	-0.00095491	648.679507461173	13.735	0.11526	13.735	13.691	13.806	0	654	28	0.886123392477847	0.018290507163651	0.886123392477847	536.155782153411	0	11.06681220421						251	14	4	NaN	NaN	NaN	5.2862E-05	1	30559	80.379	74.175	1	80842			16937	1493	14272	14683	16937	16937		
RIELLEEVK	9	Unmodified	_RIELLEEVK_			0	0	1	O60306	O60306	O60306	AQR	Intron-binding protein aquarius	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.834788	1127.65502	1.0063	0.00056838	1.1077	0.00062569	2.114	0.0011941	564.83538967788	8.8576	0.079918	8.8576	8.831	8.9109	0	582	25	0.934820374997243	0.0162053462177963	0.934820374997243	379.007361180389	0	6.57018788988171						136	10	3	NaN	NaN	NaN	0.012882	1	7471	78.816	35.082	1	30503			16938	254	14273	14684	16938	16938		
RIEPLSPELVAAASAVADSLPFDK	24	Unmodified	_RIEPLSPELVAAASAVADSLPFDK_			0	0	1	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.782995	2495.32715	0.65096	0.00054211	-1.7262	-0.0014375	-1.0752	-0.00089543	833.115966344227	19.978	0.035498	19.978	19.96	19.995	0	513	52	0.981336640919867	0.0343245429890272	0.981336640919867	592.831024925019	0	20.7356508987516						156	5	4	NaN	NaN	NaN	5.524E-07	1	36805	69.223	61.149	1	31882			16939	2425	14274	14685	16939	16939		
RIEVEQALAHPYLEQYYDPSDEPIAEAPFK	30	Unmodified	_RIEVEQALAHPYLEQYYDPSDEPIAEAPFK_			0	0	1	P28482	P28482	P28482	MAPK1	Mitogen-activated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	880.433318	3517.70417	2.5747	0.0022669	0.18325	0.00016134	2.758	0.0024282	880.934416336086	15.544	0.15087	15.544	15.455	15.606	0	294	43	1.12800004657306	0.0280013716258987	1.12800004657306	907.109963596224	0	22.5180160881918						299	18	5	NaN	NaN	NaN	0.014604	1	38659	19.689	18.607	1	76624			16940	879	14275	14686	16940	16940		
RIITYNEAMDSPDQ	14	Unmodified	_RIITYNEAMDSPDQ_			0	0	1	Q7Z417	Q7Z417	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.882869	1651.75119	2.3512	0.0019442	-1.0339	-0.00085493	1.3173	0.0010893	826.882416939827	7.935	0.15073	7.935	7.8285	7.9793	0	393	28	1.0618830335572	0.0180766890154731	1.0618830335572	428.868891241189	0	7.30073777467521						248	18	4	NaN	NaN	NaN	5.819E-07	1	23093	115.05	92.154	1	54524			16941	2134	14276	14687	16941	16941		
RIQEIIEQLDVTTSEYEK	18	Unmodified	_RIQEIIEQLDVTTSEYEK_			0	0	1	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.046107	2193.11649	0.84981	0.0006221	-0.32853	-0.0002405	0.52128	0.0003816	732.379921557051	14.976	0.25715	14.976	14.923	15.18	0	507	64	0.985374541851584	0.0424009137494717	0.985374541851584	595.724321610309	0	25.6341670159221						997	30	6	NaN	NaN	NaN	1.7723E-10	1	34602	203.76	186.35	1	649930			16942	635	14277	14688	16942	16942		
RKPEDVLDDDDAGSAPLK	18	Unmodified	_RKPEDVLDDDDAGSAPLK_			0	0	2	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.656843	1939.9487	1.1478	0.00074339	0.77385	0.00050119	1.9217	0.0012446	647.657361146876	6.7555	0.10642	6.7555	6.72	6.8264	0	612	31	0.914549654013882	0.0202875850561227	0.914549654013882	553.359481234297	0	12.2752520794047						182	13	3	NaN	NaN	NaN	0.0022851	1	30509	39.587	38.705	1	36155			16943	976	14278	14689	16943	16943		
RLDECEEAFQGTK	13	Unmodified	_RLDECEEAFQGTK_			0	0	1	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.243717	1581.70932	0.51933	0.00027433	0.39958	0.00021107	0.91891	0.00048541	528.243934051471	5.0706	0.0798	5.0706	5.0351	5.1149	0	723	43	0.839303037468863	0.028552837009126	0.839303037468863	508.645750690339	0	17.3039755207423						163	10	3	NaN	NaN	NaN	0.031872	1	21015	39.702	32.955	1	31678			16944	1340	14279	14690	16944	16944		
RLDEYTQEEIDAFPR	15	Unmodified	_RLDEYTQEEIDAFPR_			0	0	1	Q9BYD1	Q9BYD1	Q9BYD1	MRPL13	39S ribosomal protein L13, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.970762	1880.89046	1.2321	0.00077375	0.84611	0.00053133	2.0783	0.0013051	628.305557506086	11.083	0.12415	11.083	11.039	11.163	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	557.164862818976	0	11.0448279418245						288	15	4	NaN	NaN	NaN	2.9934E-06	1	29160	114.93	88.47	1	91098			16945	2797	14280	14691	16945	16945		
RLDGIDYNPWVEFVK	15	Unmodified	_RLDGIDYNPWVEFVK_			0	0	1	Q16773	Q16773	Q16773	CCBL1	Kynurenine--oxoglutarate transaminase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.652705	1849.93628	-0.53739	-0.00033192	0.43027	0.00026576	-0.10711	-6.6158E-05	617.987524700454	16.298	0.097531	16.298	16.245	16.342	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	551.094579979849	0	14.7374305040311						213	12	3	NaN	NaN	NaN	0.040289	1	28493	28.277	24.295	1	43519			16946	1906	14281	14692	16946	16946		
RLDLVHTAALMLDK	14	Unmodified	_RLDLVHTAALMLDK_			0	0	1	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.636109	1594.8865	-0.17427	-9.282E-05	-3.2131	-0.0017114	-3.3874	-0.0018042	532.634182084331	14.444	0.17734	14.444	14.4	14.577	0	708	34	0.849494101904619	0.0224141150004975	0.849494101904619	514.785019684429	0	13.5827318940416						460	21	5	NaN	NaN	NaN	1.8019E-11	1	21439	128.57	105.67	1	219680			16947	350	14282	14693	16947	16947		
RLDQELDFILSQQK	14	Unmodified	_RLDQELDFILSQQK_			0	0	1	P37198	P37198	P37198	NUP62	Nuclear pore glycoprotein p62	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.312459	1731.91555	-0.57701	-0.00033369	0.017402	1.0064E-05	-0.55961	-0.00032363	578.312383265829	14.95	0.14191	14.95	14.905	15.047	0	663	28	0.880024865079826	0.018298122879973	0.880024865079826	532.923373050819	0	11.0809339061221						334	17	4	NaN	NaN	NaN	8.0527E-06	1	25386	145.95	128.95	1	114930			16948	998	14283	14694	16948	16948		
RLDQELDFILSQQK	14	Unmodified	_RLDQELDFILSQQK_			0	0	1	P37198	P37198	P37198	NUP62	Nuclear pore glycoprotein p62	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.965051	1731.91555	1.7976	0.0015585	0.83355	0.00072266	2.6312	0.0022811	866.966256711109	14.959	0.25716	14.959	14.879	15.136	0	306	40	1.12000185836644	0.026003062393495	1.12000185836644	452.167465434767	0	10.4979636669155						416	30	4	NaN	NaN	NaN	0.0031991	1	25389	56.938	48.131	1	108090			16949	998	14283	14694	16949	16949		
RLDYITAEIK	10	Unmodified	_RLDYITAEIK_			0	0	1	O15212	O15212	O15212	PFDN6	Prefoldin subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.34552	1220.67649	1.4738	0.00090101	0.28312	0.00017308	1.7569	0.0010741	611.345653376197	8.5293	0.73636	8.5293	8.4051	9.1415	0	519	73	0.97729762293174	0.0485219234493021	0.97729762293174	395.864170909207	0	19.6542901020845						823	84	4	NaN	NaN	NaN	2.2433E-09	1	10044	152.17	102.21	1	427730			16950	154	14284	14695	16950	16950		
RLEAELAAHEPAIQGVLDTGK	21	Unmodified	_RLEAELAAHEPAIQGVLDTGK_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.065725	2217.17535	0.15584	0.00011533	0.82594	0.00061125	0.98178	0.00072658	740.400697684885	11.624	0.13309	11.624	11.553	11.687	0	594	31	0.926715457081489	0.0202651042983174	0.926715457081489	560.22277201849	0	12.2507645885191						331	16	4	NaN	NaN	NaN	0.00063626	1	34867	47.267	43.417	1	70416			16951	1703	14285	14696	16951	16951		
RLEASDGGLDSAELAAELGMEHQAVVGAVK	30	Unmodified	_RLEASDGGLDSAELAAELGMEHQAVVGAVK_			0	0	1	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	756.633017	3022.50296	1.3839	0.0010471	-0.81321	-0.0006153	0.57064	0.00043177	756.883084290141	14.471	0.088685	14.471	14.435	14.524	0	474	25	1.00756305028564	0.0161248344128324	1.00756305028564	810.78043669252	0	12.9755654329767						275	11	6	NaN	NaN	NaN	1.1495E-15	1	38263	93.812	92.268	1	75397			16952	3337	14286	14697	16952	16952		
RLEDLSESIVNDFAYMK	17	Unmodified	_RLEDLSESIVNDFAYMK_			0	0	1	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.334824	2028.98264	-0.67459	-0.00045692	0.2934	0.00019873	-0.38119	-0.0002582	677.669757737106	17.415	0.088656	17.415	17.371	17.459	0	666	88	0.877991458330206	0.0589034369218339	0.877991458330206	531.074058125678	0	35.6291476264719						434	11	4	NaN	NaN	NaN	0.00017176	1	32135	58.338	49.97	1	93445			16953	1146	14287	14698	16953	16953		
RLEDLSESIVNDFAYMK	17	Oxidation (M)	_RLEDLSESIVNDFAYM(Oxidation (M))K_	RLEDLSESIVNDFAYM(1)K	RLEDLSESIVNDFAYM(77)K	0	1	1	P49755	P49755	P49755	TMED10	Transmembrane emp24 domain-containing protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.666462	2044.97756	0.5451	0.00037212	0.10537	7.1931E-05	0.65046	0.00044405	683.000920068501	15.331	0.08868	15.331	15.296	15.384	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	586.222406000261	0	14.667943776998						241	11	4	NaN	NaN	NaN	0.0036875	1	32438	76.563	76.375	1	60459			16954	1146	14287	14699	16954	16954	415	
RLEEALMADMLAHVEELAR	19	Unmodified	_RLEEALMADMLAHVEELAR_			0	0	1	O95983	O95983	O95983	MBD3	Methyl-CpG-binding domain protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.041646	2196.10311	0.60755	0.00044536	0.3291	0.00024124	0.93665	0.0006866	733.376246648371	19.658	0.062056	19.658	19.632	19.694	0	417	22	1.04580932352505	0.0140712896137907	1.04580932352505	632.255748759707	0	8.50695585768392						120	8	4	NaN	NaN	NaN	0.038367	1	34640	31.767	30.956	1	20410			16955	464	14288	14700	16955	16955		
RLEEELR	7	Unmodified	_RLEEELR_			0	0	1	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.761623	943.508694	0.87216	0.00041232	0.68627	0.00032444	1.5584	0.00073677	472.761987521266	3.173	0.18623	3.173	3.1375	3.3237	0	711	25	0.847456455381371	0.0163000411099919	0.847456455381371	344.395770074673	0	6.62413410704187						148	22	2	NaN	NaN	NaN	0.026818	1	3125	98.009	22.765	1	33446			16956	1567	14289	14701	16956	16956		
RLEEIPLIK	9	Unmodified	_RLEEIPLIK_			0	0	1	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.847699	1109.68084	0.54631	0.00030367	0.41516	0.00023077	0.96147	0.00053443	555.847958763479	9.3987	0.26605	9.3987	9.2656	9.5317	0	606	43	0.918606045818476	0.0283908138186021	0.918606045818476	372.506382073192	0	11.512834460237						615	31	3	NaN	NaN	NaN	0.010417	1	6993	63.397	18.577	1	277310			16957	1728	14290	14702	16957	16957		
RLEENDDDAYLNSPWADNTALK	22	Unmodified	_RLEENDDDAYLNSPWADNTALK_			0	0	1	P57076	P57076	P57076	C21orf59	UPF0769 protein C21orf59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	850.729618	2549.16702	0.51319	0.00043659	0.48186	0.00040993	0.99505	0.00084652	851.064742109427	12.103	0.079823	12.103	12.068	12.148	0	522	37	0.975277694896658	0.0242408171075922	0.975277694896658	589.101861628232	0	14.6423019414847						216	10	4	NaN	NaN	NaN	1.068E-11	1	37020	100.6	93.612	1	40742			16958	1291	14291	14703	16958	16958		
RLGPGGLDPVEVYESLPEELQK	22	Unmodified	_RLGPGGLDPVEVYESLPEELQK_			0	0	1	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.091828	2424.25366	0.313	0.00025324	-1.7104	-0.0013839	-1.3974	-0.0011306	809.425046363149	16.847	0.17739	16.847	16.759	16.936	0	570	61	0.942920803299286	0.040479730715125	0.942920803299286	569.716265783664	0	24.4580042589529						713	21	4	NaN	NaN	NaN	2.1635E-11	1	36465	103.63	94.503	1	172010			16959	1888	14292	14704	16959	16959		
RLLEDGEDFNLGDALDSSNSMQTIQK	26	Unmodified	_RLLEDGEDFNLGDALDSSNSMQTIQK_			0	0	1	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	966.12582	2895.35563	1.0492	0.0010137	0.8304	0.00080227	1.8796	0.0018159	966.460864133289	14.755	0.053221	14.755	14.728	14.781	0	411	52	1.04982941439551	0.0341684265404665	1.04982941439551	633.722405847662	0	20.6255389440784						281	7	4	NaN	NaN	NaN	9.9649E-10	1	38065	69.712	68.615	1	49417			16960	536	14293	14705	16960	16960		
RLLEDGEDFNLGDALDSSNSMQTIQK	26	Oxidation (M)	_RLLEDGEDFNLGDALDSSNSM(Oxidation (M))QTIQK_	RLLEDGEDFNLGDALDSSNSM(1)QTIQK	RLLEDGEDFNLGDALDSSNSM(40)QTIQK	0	1	1	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	971.457458	2911.35054	1.6531	0.001606	1.2547	0.0012189	2.9078	0.0028248	971.793009859253	13.655	0.053183	13.655	13.629	13.682	0	429	37	1.03776581230406	0.0241405316442127	1.03776581230406	626.42383695476	0	14.5718853708632						189	7	4	NaN	NaN	NaN	2.0441E-05	1	38091	40.472	40.235	1	29549			16961	536	14293	14706	16961	16961	104	
RLLEEELR	8	Unmodified	_RLLEEELR_			0	0	1		REV__A6NC98	REV__A6NC98			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.303655	1056.59276	1.0127	0.00053604	1.2962	0.00068608	2.3089	0.0012221	529.304371702096	5.9573	0.10646	5.9573	5.9307	6.0372	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	366.149423241592	0	9.06204375164401						204	13	3	NaN	NaN	NaN	0.015019	1	5638	65.404	0	1	52739	+		16962	3480	14294	14707	16962	16962		
RLSEDYGVLK	10	Unmodified	_RLSEDYGVLK_			0	0	1	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.322045	1178.62954	1.9628	0.0011587	-0.27719	-0.00016363	1.6856	0.00099503	590.322178613853	5.9485	0.12421	5.9485	5.913	6.0372	0	567	34	0.944945209309785	0.0222684693182358	0.944945209309785	382.91213347325	0	9.02366297201252						267	15	4	NaN	NaN	NaN	0.00024121	1	8850	90.263	71.007	1	123480			16963	936	14295	14708	16963	16963		
RMEELHNQEMQK	12	Unmodified	_RMEELHNQEMQK_			0	0	1	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.913425	1571.71845	0.7631	0.00040056	0.46709	0.00024518	1.2302	0.00064574	524.913863777753	2.6409	0.097537	2.6409	2.6143	2.7119	0	735	25	0.831145085810763	0.0163204408443606	0.831145085810763	503.729512499251	0	9.89127873177898						143	12	3	NaN	NaN	NaN	0.036436	1	20702	34.193	25.216	1	33701			16964	814	14296	14709	16964	16964		
RMEELHNQEVQK	12	Unmodified	_RMEELHNQEVQK_			0	0	1	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.256068	1539.74637	0.64053	0.0003294	0.62471	0.00032126	1.2652	0.00065066	514.256731671957	2.4636	0.12416	2.4636	2.4459	2.57	0	744	28	0.82502364452135	0.0183694328474171	0.82502364452135	500.110058551879	0	11.1351210330661						206	15	4	NaN	NaN	NaN	0.00033511	1	19715	62.705	48.907	1	46978			16965	1824	14297	14710	16965	16965		
RNDFQLIGIQDGYLSLLQDSGEVR	24	Unmodified	_RNDFQLIGIQDGYLSLLQDSGEVR_			0	0	1	P63241	P63241	P63241	EIF5A	Eukaryotic translation initiation factor 5A-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	912.803229	2735.38786	0.7221	0.00065913	-0.073662	-6.7239E-05	0.64843	0.00059189	913.13773428966	18.843	0.26599	18.843	18.781	19.046	0	501	124	0.98941132619024	0.0826228099151061	0.98941132619024	597.418407585864	0	49.8886420876299						1850	31	7	NaN	NaN	NaN	1.2845E-51	1	37713	300.98	284.56	1	1180900			16966	1434	14298	14711	16966	16966		
RPAEDMEEEQAFK	13	Unmodified	_RPAEDMEEEQAFK_			0	0	1	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.240084	1578.69842	0.10794	5.6913E-05	-0.12158	-6.4102E-05	-0.013635	-7.1889E-06	527.239961043393	5.044	0.16846	5.044	4.9997	5.1681	0	801	133	0.78619514174348	0.0899751345939704	0.78619514174348	476.468466333144	0	54.5288467352232						1118	20	5	NaN	NaN	NaN	4.2905E-11	1	20924	162.21	135.63	1	444040			16967	1360	14299	14712	16967	16967		
RPAEDMEEEQAFK	13	Unmodified	_RPAEDMEEEQAFK_			0	0	1	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.356487	1578.69842	3.5096	0.0027739	-2.2559	-0.0017829	1.2538	0.00099093	790.354711908599	5.044	0.3015	5.044	4.9908	5.2923	0	435	70	1.03374239103424	0.0462853457660803	1.03374239103424	417.664237665973	0	18.7007264306487						1661	35	8	NaN	NaN	NaN	0.0010428	1	20925	93.162	79.988	1	896180			16968	1360	14299	14712	16968	16968		
RPAEDMEEEQAFK	13	Oxidation (M)	_RPAEDM(Oxidation (M))EEEQAFK_	RPAEDM(1)EEEQAFK	RPAEDM(110)EEEQAFK	0	1	1	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.571722	1594.69334	-0.61498	-0.00032752	2.6939	0.0014347	2.0789	0.0011072	532.572964355417	3.6342	0.15954	3.6342	3.5544	3.714	-4.4409E-16	783	31	0.798467866007927	0.0204488487727063	0.798467866007927	483.864104971568	0	12.3918122824072						290	19	3	NaN	NaN	NaN	0.00016297	1	21411	105.94	101.96	1	74944			16969	1360	14299	14713	16969	16969	486	
RPEAAQLLEDVQAALK	16	Unmodified	_RPEAAQLLEDVQAALK_			0	0	1	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.659859	1750.95775	-1.5172	-0.00088704	-1.0485	-0.00061299	-2.5656	-0.0015	584.659173991319	16.883	0.11532	16.883	16.839	16.954	0	681	46	0.867820189810857	0.0305434851459953	0.867820189810857	525.487166946206	0	18.4948560387039						280	14	3	NaN	NaN	NaN	0.0032082	1	25932	75.5	62.326	1	64386			16970	1137	14300	14714	16970	16970		
RPENSLLEETLHFDHAVR	18	Unmodified	_RPENSLLEETLHFDHAVR_			0	0	1	O00566	O00566	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	541.528993	2162.08686	-0.45567	-0.00024676	0.10604	5.7423E-05	-0.34963	-0.00018933	541.528754711076	11.323	0.088704	11.323	11.287	11.376	0	720	22	0.841341816837976	0.0142694733102946	0.841341816837976	678.25516207501	0	11.5034623729664						126	11	3	NaN	NaN	NaN	0.0021145	1	34211	45.654	40.266	1	26514			16971	91	14301	14715	16971	16971		
RPIELSDYIHPVCLPDK	17	Unmodified	_RPIELSDYIHPVCLPDK_			0	0	1	CON__P00735	CON__P00735	CON__P00735			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.690942	2051.051	0.57066	0.00039072	-0.87407	-0.00059847	-0.30342	-0.00020775	685.024467077571	13.345	0.10645	13.345	13.292	13.398	0	567	28	0.944945209309785	0.0182171330553085	0.944945209309785	571.530879784602	0	11.0182622015286						216	13	4	NaN	NaN	NaN	0.00019095	1	32558	42.218	36.603	1	56410		+	16972	23	14302	14716	16972	16972		
RPPEPTTPWQEDPEPEDENLYEK	23	Unmodified	_RPPEPTTPWQEDPEPEDENLYEK_			0	0	1	Q9NX14	Q9NX14	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	932.759354	2795.25623	1.3804	0.0012876	0.70422	0.00065687	2.0847	0.0019445	933.094297120067	10.312	0.14185	10.312	10.259	10.401	0	486	55	0.999498404980629	0.0363160067366667	0.999498404980629	603.443726293498	0	21.9256642332497						551	17	4	NaN	NaN	NaN	1.7188E-06	1	37886	48.037	48.022	1	117050			16973	3090	14303	14717	16973	16973		
RPSPDEPMTNLELK	14	Unmodified	_RPSPDEPMTNLELK_			0	0	1	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.943379	1625.80831	-1.3561	-0.00073627	0.37346	0.00020277	-0.98261	-0.0005335	542.943626491413	8.068	0.11535	8.068	8.0237	8.139	0	798	34	0.788241307691771	0.0225046954516063	0.788241307691771	477.588293592955	0	13.6353918447073						250	14	3	NaN	NaN	NaN	3.4566E-06	1	22356	157.74	144.56	1	58433			16974	3213	14304	14718	16974	16974		
RPTPQDSPIFLPVDDTSFR	19	Unmodified	_RPTPQDSPIFLPVDDTSFR_			0	0	1	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	730.039287	2187.09603	-0.31523	-0.00023013	-0.90895	-0.00066357	-1.2242	-0.00089369	730.372872055154	14.063	0.1064	14.063	14.028	14.134	0	651	34	0.888155670855968	0.0223550653870297	0.888155670855968	536.958357779299	0	13.5153550128207						322	13	4	NaN	NaN	NaN	0.0027193	1	34548	29.408	27.56	1	65302			16975	1127	14305	14719	16975	16975		
RQDLEDSLQAQQYFADANEAESWMR	25	Unmodified	_RQDLEDSLQAQQYFADANEAESWMR_			0	0	1	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1001.11755	3000.33081	0.61902	0.00061971	0.84265	0.0008436	1.4617	0.0014633	1001.45253349801	16.333	0.062084	16.333	16.307	16.369	0	408	49	1.0518390438467	0.0321562992894993	1.0518390438467	634.829274459449	0	19.4076843474056						276	8	5	NaN	NaN	NaN	1.0145E-09	1	38224	98.889	97.345	1	45958			16976	1703	14306	14720	16976	16976		
RQELEAELAK	10	Unmodified	_RQELEAELAK_			0	0	1	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.824952	1185.63535	2.3755	0.0014106	-1.0307	-0.00061208	1.3447	0.00079853	593.824333412396	4.5209	0.17734	4.5209	4.4854	4.6627	0	537	28	0.965173861991602	0.0181944515400058	0.965173861991602	391.082485055493	0	7.37227934022638						278	21	4	NaN	NaN	NaN	0.015375	1	9033	79.059	52.602	1	84888			16977	1816	14307	14721	16977	16977		
RQHEEPESFFTWFTDHSDAGADELGEVIK	29	Unmodified	_RQHEEPESFFTWFTDHSDAGADELGEVIK_			0	0	1	Q01105	Q01105	Q01105	SET	Protein SET	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	845.139092	3376.52726	0.33691	0.00028473	-0.60407	-0.00051052	-0.26716	-0.00022579	845.389114739961	17.876	0.25711	17.876	17.787	18.045	0	585	25	0.932794566565362	0.0162075912580637	0.932794566565362	750.254107071013	0	13.035894872184						653	30	5	NaN	NaN	NaN	2.1998E-06	1	38593	21.743	21.507	1	143890			16978	1513	14308	14722	16978	16978		
RSDLYAVEMK	10	Unmodified	_RSDLYAVEMK_			0	0	1	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.308081	1210.60161	1.7051	0.0010338	0.3894	0.0002361	2.0945	0.0012699	606.308471843126	6.0904	0.12412	6.0904	6.0638	6.1879	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	389.351686047216	0	8.19117833623363						259	15	4	NaN	NaN	NaN	0.0053442	1	9749	60.547	40.314	1	63735			16979	3001	14309	14723	16979	16979		
RTDDIPVWDQEFLK	14	Unmodified	_RTDDIPVWDQEFLK_			0	0	1	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.96506	1760.87335	-1.1067	-0.00065071	-1.4916	-0.00087699	-2.5983	-0.0015277	587.964036266525	13.895	0.088663	13.895	13.868	13.957	0	783	97	0.798467866007927	0.0654546077244867	0.798467866007927	483.471211382104	0	39.6326763221099						515	11	5	NaN	NaN	NaN	0.00013432	1	26169	84.999	80.472	1	158310			16980	1431	14310	14724	16980	16980		
RTDDIPVWDQEFLK	14	Unmodified	_RTDDIPVWDQEFLK_			0	0	1	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.443951	1760.87335	3.1201	0.0027502	-0.080369	-7.084E-05	3.0397	0.0026793	881.444378501667	13.903	0.3724	13.903	13.673	14.045	0	312	79	1.11600111266355	0.0520527185893278	1.11600111266355	450.493448470654	0	21.0119940146048						1209	43	5	NaN	NaN	NaN	1.9257E-07	1	26170	86.729	77.922	1	719030			16981	1431	14310	14724	16981	16981		
RTDLCDHALHISHDEL	16	Unmodified	_RTDLCDHALHISHDEL_			0	0	1	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	483.731166	1930.89556	-0.38464	-0.00018606	0.76859	0.00037179	0.38395	0.00018573	483.731278560712	7.4738	0.18622	7.4738	7.4205	7.6068	0	753	61	0.81889964927511	0.0408124648651854	0.81889964927511	660.666552851109	0	32.9264159530499						547	22	5	NaN	NaN	NaN	0.0043815	1	30319	31.722	26.024	1	260970			16982	3341	14311	14725	16982	16982		
RTDLCDHALHISHDEL	16	Unmodified	_RTDLCDHALHISHDEL_			0	0	1	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.639129	1930.89556	0.8512	0.00054872	0.37664	0.0002428	1.2278	0.00079151	644.973484102335	7.4738	0.11529	7.4738	7.4383	7.5536	0	648	40	0.890187667287968	0.0264159589549013	0.890187667287968	538.636881941605	0	15.9838315984697						382	14	5	NaN	NaN	NaN	5.9407E-09	1	30320	104.49	91.273	1	135380			16983	3341	14311	14725	16983	16983		
RTDLCDHALHISHDEL	16	Unmodified	_RTDLCDHALHISHDEL_			0	0	1	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.455056	1930.89556	2.3684	0.0022889	-0.79413	-0.00076749	1.5742	0.0015214	966.454151353444	7.4738	0.070936	7.4738	7.4472	7.5181	0	204	49	1.18784641916898	0.0318567027040773	1.18784641916898	479.165087452632	0	12.8506678058858						225	9	3	NaN	NaN	NaN	0.022623	1	30321	31.801	30.09	1	47233			16984	3341	14311	14725	16984	16984		
RTELFIAAEGIHTGQFVYCGK	21	Unmodified	_RTELFIAAEGIHTGQFVYCGK_			0	0	1	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	799.738843	2396.1947	1.7446	0.0013953	2.4979	0.0019977	4.2425	0.0033929	800.074953278998	12.626	0.070922	12.626	12.591	12.662	0	348	40	1.09197348738011	0.0260496561958328	1.09197348738011	659.818453996182	0	15.7403490807312						150	9	2	NaN	NaN	NaN	5.6421E-05	1	36324	43.767	42.035	1	47328			16985	1416	14312	14726	16985	16985		
RTEMENEFVLIK	12	Unmodified	_RTEMENEFVLIK_			0	0	1	P05787;CON__P05787;CON__H-INV:HIT000016045	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.597431	1507.77046	-0.96333	-0.00048513	-0.76849	-0.00038701	-1.7318	-0.00087214	503.597323704155	10.684	0.13301	10.684	10.649	10.782	0	759	43	0.814815566123307	0.0286005208514435	0.814815566123307	494.015374664512	0	17.3402394498289						333	16	4	NaN	NaN	NaN	0.0054264	1	18732	65.933	60.782	1	112950		+	16986	28	14313	14727	16986	16986		
RTGAIVDVPVGEELLGR	17	Unmodified	_RTGAIVDVPVGEELLGR_			0	0	1	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.335375	1779.9843	-0.61413	-0.000365	-0.10737	-6.3813E-05	-0.7215	-0.00042881	594.669481406832	13.469	0.079847	13.469	13.416	13.496	0	702	22	0.853568545818287	0.0142575833837986	0.853568545818287	516.791289665423	0	8.6322240205817						142	10	3	NaN	NaN	NaN	0.0021615	1	26683	57.042	52.488	1	34237			16987	840	14314	14728	16987	16987		
RTGYESGEYEMLGEGLGVK	19	Unmodified	_RTGYESGEYEMLGEGLGVK_			0	0	1	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.32985	2073.96772	1.1946	0.00082708	-0.46062	-0.0003189	0.73401	0.00050818	692.329485248979	11.376	0.10647	11.376	11.341	11.447	0	522	31	0.975277694896658	0.0202034745303079	0.975277694896658	589.833078998733	0	12.2187533366554						280	13	4	NaN	NaN	NaN	0.0022536	1	32918	53.773	48.956	1	70158			16988	1684	14315	14729	16988	16988		
RTLEGELHDLR	11	Unmodified	_RTLEGELHDLR_			0	0	1	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.908997	1337.70516	-1.2009	-0.0005367	-0.13107	-5.8575E-05	-1.332	-0.00059527	446.909223737309	6.3121	0.31926	6.3121	6.1791	6.4983	0	798	37	0.788241307691771	0.024552286497425	0.788241307691771	478.455101352737	0	14.9030082665503						580	37	4	NaN	NaN	NaN	0.0071459	1	13531	69.276	35.85	1	311330			16989	493	14316	14730	16989	16989		
RVDIDEFDENK	11	Unmodified	_RVDIDEFDENK_			0	0	1	Q9BPX5	Q9BPX5	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.325513	1378.63647	1.5995	0.0011042	2.66	0.0018362	4.2595	0.0029404	690.328870100054	6.7821	0.25708	6.7821	6.658	6.9151	0	519	49	0.97729762293174	0.0323032171840146	0.97729762293174	395.356623206818	0	13.0679647273434						439	30	4	NaN	NaN	NaN	0.012072	1	14761	72.922	52.688	1	126260			16990	2688	14317	14731	16990	16990		
RVDIIPGFEFDR	12	Unmodified	_RVDIIPGFEFDR_			0	0	1	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.385708	1462.75686	1.1072	0.00081089	1.1846	0.00086757	2.2918	0.0016785	732.38584491638	14.028	0.18621	14.028	13.966	14.152	0	435	58	1.03374239103424	0.0382409924539848	1.03374239103424	417.951965076759	0	15.4612000835508						455	22	4	NaN	NaN	NaN	0.0023713	1	17355	73.655	59.2	1	137510			16991	2892	14318	14732	16991	16991		
RVEIMEEESEQ	11	Unmodified	_RVEIMEEESEQ_			0	0	1	P54578	P54578	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.811381	1377.60821	1.7711	0.0012217	-0.79409	-0.00054777	0.97697	0.00067393	689.810798225036	5.9307	0.24835	5.9307	5.8953	6.1436	0	537	34	0.965173861991602	0.0222376640579702	0.965173861991602	390.454975994016	0	8.99610622277021						441	29	4	NaN	NaN	NaN	9.7548E-07	1	14722	112.93	91.775	1	157370			16992	1252	14319	14733	16992	16992		
RVFIMDSCDELIPEYLNFIR	20	Unmodified	_RVFIMDSCDELIPEYLNFIR_			0	0	1	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	844.087144	2529.2396	0.42588	0.00035948	-0.80926	-0.00068309	-0.38338	-0.00032361	844.421368059894	19.481	0.070939	19.481	19.437	19.508	0	522	40	0.975277694896658	0.0262663358758335	0.975277694896658	589.127031291184	0	15.8664640423941						165	9	4	NaN	NaN	NaN	0.036158	1	36960	39.82	39.487	1	24103			16993	579	14320	14734	16993	16993		
RVFITDDFHDMMPK	14	Unmodified	_RVFITDDFHDMMPK_			0	0	1	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.612975	1750.8171	-0.088503	-5.174E-05	-0.93789	-0.0005483	-1.0264	-0.00060004	584.946910605588	12.165	0.28381	12.165	11.997	12.281	0	687	67	0.863749705078866	0.044762926451146	0.863749705078866	523.022714286996	0	27.1051059748494						1596	33	5	NaN	NaN	NaN	7.8021E-06	1	25907	104.04	94.78	1	577550			16994	700	14321	14735	16994	16994		
RVNEVIVGNDQLMEI	15	Unmodified	_RVNEVIVGNDQLMEI_			0	0	1	Q9NR50	Q9NR50	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.951086	1727.88762	2.3303	0.0020156	0.71024	0.00061432	3.0406	0.0026299	864.950820749706	14.258	0.070924	14.258	14.223	14.294	0	348	52	1.09197348738011	0.0340414857493967	1.09197348738011	440.860004088635	0	13.7434926031663						159	9	2	NaN	NaN	NaN	0.010634	1	25272	49.097	43.069	1	33180			16995	3015	14322	14736	16995	16995		
RYDDPEVQK	9	Unmodified	_RYDDPEVQK_			0	0	1	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.280377	1148.5462	2.3818	0.0013702	-0.94444	-0.00054332	1.4373	0.00082687	575.27985578651	2.4193	0.18622	2.4193	2.3661	2.5523	0	600	43	0.922661313351899	0.0283947491785544	0.922661313351899	373.995493110938	0	11.5096493882633						325	22	3	NaN	NaN	NaN	0.007174	1	8019	65.404	45.17	1	58797			16996	1007	14323	14737	16996	16996		
RYDQDLCYTDILFTEQER	18	Unmodified	_RYDQDLCYTDILFTEQER_			0	0	1	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.030352	2364.06923	0.4411	0.00034804	-1.5868	-0.0012521	-1.1457	-0.00090401	789.363843265968	14.4	0.088678	14.4	14.373	14.462	0	621	46	0.908462957275599	0.0304250551653156	0.908462957275599	548.976315336848	0	18.385597942997						312	11	4	NaN	NaN	NaN	4.4528E-07	1	36162	82.822	79.916	1	82373			16997	1796	14324	14738	16997	16997		
RYNEDLELEDAIHTAILTLK	20	Unmodified	_RYNEDLELEDAIHTAILTLK_			0	0	1	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	590.064137	2356.22744	-0.83717	-0.00049398	-0.35659	-0.00021041	-1.1938	-0.00070439	590.314763685813	18.444	0.07986	18.444	18.408	18.488	0	699	19	0.85560534332665	0.0122182397149359	0.85560534332665	689.391556839411	0	9.84466888222903						131	10	4	NaN	NaN	NaN	0.022327	1	36107	26.21	26.121	1	26113			16998	842	14325	14739	16998	16998		
RYNEDLELEDAIHTAILTLK	20	Unmodified	_RYNEDLELEDAIHTAILTLK_			0	0	1	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.416423	2356.22744	1.4082	0.0011075	-0.17121	-0.00013464	1.237	0.00097281	786.751150440355	18.435	0.11535	18.435	18.399	18.515	0	405	40	1.05384839605172	0.0261251880875029	1.05384839605172	636.843853124085	0	15.7875321607646						534	14	5	NaN	NaN	NaN	1.4992E-08	1	36108	117.9	110.59	1	203140			16999	842	14325	14739	16999	16999		
SAAAGPEPLPGAEGGPQVCEAK	22	Unmodified	_SAAAGPEPLPGAEGGPQVCEAK_			0	0	0	P78413	P78413	P78413	IRX4	Iroquois-class homeodomain protein IRX-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.00204	2091.98952	2.517	0.0026353	-0.53679	-0.00056202	1.9802	0.0020733	1047.50254607248	7.9881	0.062133	7.9881	7.9615	8.0237	8.8818E-16	228	25	1.17191150690002	0.0159414808498628	1.17191150690002	472.477259972683	0	6.42709551660096						104	8	3	NaN	NaN	NaN	0.033125	1	33216	21.21	18.969	1	17023			17000	1463	14326	14740	17000	17000		
SAAASNLSGLSLQEAQQILNVSK	23	Unmodified	_SAAASNLSGLSLQEAQQILNVSK_			0	0	0	Q9Y3D7	Q9Y3D7	Q9Y3D7	PAM16	Mitochondrial import inner membrane translocase subunit TIM16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.12153	2328.2285	0.53727	0.00062599	0.1741	0.00020285	0.71137	0.00082884	1165.6231882046	17.513	0.1153	17.513	17.468	17.583	0	78	43	1.27121832677567	0.0277183202097289	1.27121832677567	512.171518291982	0	11.1676600685332						382	14	5	NaN	NaN	NaN	1.1235E-06	1	35884	62.304	56.975	1	107650			17001	3389	14327	14741	17001	17001		
SAADAEGYLAHPVNAYK	17	Unmodified	_SAADAEGYLAHPVNAYK_			0	0	0	O15460	O15460	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.931208	1775.84786	2.5757	0.0022896	-0.9832	-0.000874	1.5925	0.0014156	889.430798942367	8.3164	0.062076	8.3164	8.281	8.343	0	276	28	1.13998907770044	0.0179748912036308	1.13998907770044	460.146300055478	0	7.25540256748309						159	8	4	NaN	NaN	NaN	0.0029409	1	26562	54.199	52.489	1	24884			17002	177	14328	14742	17002	17002		
SAADEVDGLGVARPHYGSVLDNER	24	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SAADEVDGLGVARPHYGSVLDNER_			1	0	1	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.080762	2568.22046	1.2315	0.0010555	1.2254	0.0010503	2.4569	0.0021058	857.415917266409	11.766	0.133	11.766	11.722	11.855	0	489	49	0.997481546940468	0.0322719687631251	0.997481546940468	602.489525465981	0	19.4926143802726						666	16	6	NaN	NaN	NaN	3.2238E-10	1	37106	77.698	76.738	1	266450			17003	1095	14329	14743	17003	17003		
SAADSISESVPVGPK	15	Unmodified	_SAADSISESVPVGPK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.369921	1442.72529	1.9241	0.0013899	-9.0892	-0.0065658	-7.1651	-0.0051759	722.363691107823	8.4318	0.16854	8.4318	8.343	8.5116	0	465	79	1.01360860968299	0.0524129921964456	1.01360860968299	409.8650355332	0	21.1938342904527						999	20	4	NaN	NaN	NaN	7.5282E-05	1	16748	112.93	60.088	1	320560			17004	1072	14330	14744	17004	17004		
SAALPIFSSFVSNWDEATK	19	Unmodified	_SAALPIFSSFVSNWDEATK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.51256	2069.01057	1.4346	0.0014855	0.52706	0.00054578	1.9616	0.0020313	1036.01424956219	19.986	0.11529	19.986	19.924	20.04	0	189	73	1.1977968526266	0.047745721392757	1.1977968526266	482.948766468824	0	19.2509582908249						670	14	5	NaN	NaN	NaN	1.0868E-19	1	32866	178.03	156.36	1	328970			17005	378	14331	14745	17005	17005		
SAALQSTQSQEEFK	14	Unmodified	_SAALQSTQSQEEFK_			0	0	0	Q96BJ3	Q96BJ3	Q96BJ3	AIDA	Axin interactor, dorsalization-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.375734	1552.73692	2.1113	0.0016413	-2.2481	-0.0017476	-0.13673	-0.00010629	777.373230456666	5.1859	0.088672	5.1859	5.1504	5.2391	0	453	25	1.02166545906632	0.016107024389808	1.02166545906632	412.844788527718	0	6.50868737805627						134	11	4	NaN	NaN	NaN	0.00010748	1	20144	104.49	65.481	1	33899			17006	2482	14332	14746	17006	17006		
SAAMLGNSEDHTALSR	16	Unmodified	_SAAMLGNSEDHTALSR_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.930021	1658.76823	-0.2537	-0.00014053	1.7388	0.00096318	1.4851	0.00082264	553.930989615268	5.5051	0.062053	5.5051	5.4785	5.5405	0	714	31	0.845418525735192	0.0203835468475623	0.845418525735192	512.145553317414	0	12.3481359362666						161	8	4	NaN	NaN	NaN	0.00014914	1	23283	61.042	57.537	1	35832			17007	278	14333	14747	17007	17007		
SAAMLGNSEDHTALSR	16	Unmodified	_SAAMLGNSEDHTALSR_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.391393	1658.76823	3.0779	0.0025559	-1.1316	-0.0009397	1.9463	0.0016162	830.390058434512	5.5051	0.11525	5.5051	5.4785	5.5937	0	273	34	1.14198628764525	0.0219693125101945	1.14198628764525	461.204429571187	0	8.87256209111598						293	14	4	NaN	NaN	NaN	4.2876E-09	1	23284	124.24	107.95	1	66392			17008	278	14333	14747	17008	17008		
SAAPGSLGYQWLSDGSGVFEIAEASGVR	28	Unmodified	_SAAPGSLGYQWLSDGSGVFEIAEASGVR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	937.790989	2810.35114	1.5343	0.0014389	-0.20929	-0.00019627	1.325	0.0012426	938.125461945469	19.729	0.062083	19.729	19.712	19.774	0	297	34	1.12600091227925	0.0219904803552342	1.12600091227925	679.801106523396	0	13.2763239491602						206	8	5	NaN	NaN	NaN	0.00052218	1	37924	36.502	33.734	1	44595			17009	1608	14334	14748	17009	17009		
SAAPSTLDSSSTAPAQLGK	19	Unmodified	_SAAPSTLDSSSTAPAQLGK_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.952337	1787.89012	2.7651	0.0024746	-2.1728	-0.0019446	0.59224	0.00053003	894.950497204508	7.0037	0.23948	7.0037	6.9151	7.1545	0	306	88	1.12000185836644	0.0579829310619109	1.12000185836644	452.055052255227	0	23.4030655710997						1204	28	4	NaN	NaN	NaN	4.7139E-07	1	26923	120.21	39.392	1	429430			17010	3439	14335	14749	17010	17010		
SAATLITHPFHVITLR	16	Unmodified	_SAATLITHPFHVITLR_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	445.008436	1776.00464	-1.1575	-0.0005151	0.64717	0.000288	-0.51033	-0.0002271	445.259383961207	12.609	0.097544	12.609	12.573	12.671	0	714	19	0.845418525735192	0.0122284278950673	0.845418525735192	682.484646105961	0	9.87169553345143						212	12	4	NaN	NaN	NaN	0.050337	1	26583	6.8556	6.1792	1	62447			17011	3458	14336	14750	17011	17011		
SAATLITHPFHVITLR	16	Unmodified	_SAATLITHPFHVITLR_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.008823	1776.00464	0.39312	0.00023312	-0.38633	-0.00022909	0.0067894	4.0262E-06	593.342705755087	12.609	0.10641	12.609	12.564	12.671	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	556.177731419109	0	12.2781816105852						295	13	4	NaN	NaN	NaN	0.00013193	1	26584	63.766	49.988	1	85695			17012	3458	14336	14750	17012	17012		
SADESGQALLAAGHYASDEVR	21	Unmodified	_SADESGQALLAAGHYASDEVR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.338173	2145.99269	2.1074	0.0015096	1.9794	0.0014179	4.0868	0.0029275	716.673033869122	10.56	0.17734	10.56	10.498	10.676	0	435	52	1.03374239103424	0.034215621891726	1.03374239103424	625.052185543366	0	20.6884707724446						586	21	4	NaN	NaN	NaN	3.9615E-06	1	33963	80.026	70.87	1	194560			17013	1703	14337	14751	17013	17013		
SADGSAPAGEGEGVTLQR	18	Unmodified	_SADGSAPAGEGEGVTLQR_			0	0	0	Q01650	Q01650	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.405554	1700.79656	3.1391	0.0026727	-1.3759	-0.0011715	1.7632	0.0015012	851.404679617205	5.7091	0.39912	5.7091	5.6292	6.0283	0	396	235	1.05987478976334	0.156482234072808	1.05987478976334	427.955115333322	0	63.1842300402273						2213	46	5	NaN	NaN	NaN	2.2828E-20	1	24512	217.16	212.85	1	1320800			17014	1518	14338	14752	17014	17014		
SADTLWDIQK	10	Unmodified	_SADTLWDIQK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.798403	1175.58225	1.3073	0.00076975	0.51802	0.00030501	1.8253	0.0010748	588.798804200634	10.622	0.42562	10.622	10.534	10.959	0	633	67	0.900343422309015	0.0446574674330033	0.900343422309015	364.849466859454	0	18.0967093005901						1698	49	5	NaN	NaN	NaN	5.5481E-10	1	8752	142.04	92.083	1	1914700			17015	553	14339	14753	17015	17015		
SAEEEAADLPTK	12	Unmodified	_SAEEEAADLPTK_			0	0	0	Q8WW12	Q8WW12	Q8WW12	PCNP	PEST proteolytic signal-containing nuclear protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.80134	1259.58813	2.3268	0.0014678	1.4414	0.00090921	3.7682	0.002377	630.803427194544	5.1327	0.266	5.1327	4.9731	5.2391	0	579	58	0.936845902828289	0.0384637307955292	0.936845902828289	379.347693237606	0	15.5747359374113						341	31	3	NaN	NaN	NaN	0.0010055	1	11191	61.577	40.489	1	83529			17016	2386	14340	14754	17016	17016		
SAEFLLHMLK	10	Unmodified	_SAEFLLHMLK_			0	0	0	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.825909	1187.63727	1.3653	0.0008121	-0.31212	-0.00018566	1.0531	0.00062644	594.82602169144	13.62	0.25713	13.62	13.567	13.824	0	534	70	0.967195187796614	0.0465098281605225	0.967195187796614	391.893912010235	0	18.8451294368761						998	30	5	NaN	NaN	NaN	0.00072042	1	9098	100.84	75.582	1	1426400			17017	756	14341	14755	17017	17017		
SAEFLLHMLK	10	Oxidation (M)	_SAEFLLHM(Oxidation (M))LK_	SAEFLLHM(1)LK	SAEFLLHM(54)LK	0	1	0	P18621	P18621	P18621	RPL17	60S ribosomal protein L17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.823366	1203.63218	1.1469	0.00069138	1.536	0.00092595	2.6829	0.0016173	602.823925231689	9.6292	0.133	9.6292	9.5849	9.7179	0	531	28	0.969216233931596	0.0181869004475753	0.969216233931596	392.652868621726	0	7.36795194103428						304	16	4	NaN	NaN	NaN	0.032227	1	9581	54.436	41.163	1	83309			17018	756	14341	14756	17018	17018	254	
SAEHYTETALDEIR	14	Unmodified	_SAEHYTETALDEIR_			0	0	0	Q96SB4	Q96SB4	Q96SB4	SRPK1	SRSF protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.886466	1633.75838	1.8071	0.001478	2.0355	0.0016648	3.8426	0.0031428	817.889107395111	8.618	0.088676	8.618	8.5825	8.6712	0	375	31	1.07392668217569	0.020067214614357	1.07392668217569	433.772751102266	0	8.10540517774865						178	11	3	NaN	NaN	NaN	0.0061981	1	22588	41.317	39.843	1	37791			17019	2621	14342	14757	17019	17019		
SAEIDSDDTGGSAAQK	16	Unmodified	_SAEIDSDDTGGSAAQK_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.342088	1550.66962	2.3019	0.001787	-2.2456	-0.0017433	0.056268	4.3683E-05	776.340185597218	2.8449	0.13299	2.8449	2.8183	2.9513	0	489	37	0.997481546940468	0.024207319296828	0.997481546940468	403.077060818219	0	9.78205074808864						216	16	3	NaN	NaN	NaN	1.9335E-08	1	20057	140.01	132.01	1	41311			17020	944	14343	14758	17020	17020		
SAELLGLDPTQLTDALTQR	19	Unmodified	_SAELLGLDPTQLTDALTQR_			0	0	0	Q9HD67	Q9HD67	Q9HD67	MYO10	Unconventional myosin-X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.54185	2041.06915	-0.014986	-1.5309E-05	1.1694	0.0011946	1.1544	0.0011793	1022.04497914448	19.321	0.070919	19.321	19.277	19.348	0	138	25	1.23157729878518	0.0158781542364044	1.23157729878518	496.614272236129	0	6.40261721155713						110	9	3	NaN	NaN	NaN	0.022655	1	32367	29.98	28.554	1	16834			17021	2972	14344	14759	17021	17021		
SAELPDAVGPIVQLQEK	17	Unmodified	_SAELPDAVGPIVQLQEK_			0	0	0	Q96PU8	Q96PU8	Q96PU8	QKI	Protein quaking	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.485816	1792.95708	1.6362	0.0014684	-2.7768	-0.0024921	-1.1406	-0.0010237	897.985486777277	14.143	0.10643	14.143	14.09	14.196	0	294	22	1.12800004657306	0.0139920153108426	1.12800004657306	455.273380037254	0	5.64733319245272						130	13	3	NaN	NaN	NaN	0.0034911	1	27051	50.641	46.335	1	31539			17022	2598	14345	14760	17022	17022		
SAELVGTFVSPEVFLK	16	Unmodified	_SAELVGTFVSPEVFLK_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.969271	1721.92399	1.0328	0.00089027	0.36092	0.0003111	1.3938	0.0012014	861.968764685229	18.115	0.088658	18.115	18.08	18.169	0	228	34	1.17191150690002	0.0219240556368867	1.17191150690002	473.146243325594	0	8.85159374404805						141	11	2	NaN	NaN	NaN	0.0016858	1	25113	37.504	35.794	1	29207			17023	2192	14346	14761	17023	17023		
SAEQISDSVR	10	Unmodified	_SAEQISDSVR_			0	0	0	O43819	O43819	O43819	SCO2	Protein SCO2 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.27001	1090.52547	2.1617	0.0011809	1.0141	0.00055396	3.1758	0.0017349	546.270815312861	3.8292	0.31919	3.8292	3.7672	4.0864	4.4409E-16	660	70	0.882057989648486	0.046761894798792	0.882057989648486	357.762743591014	0	18.9666257491724						506	37	2	NaN	NaN	NaN	0.040351	1	6471	41.796	6.8432	1	164510			17024	236	14347	14762	17024	17024		
SAEVETSEGVDESEK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SAEVETSEGVDESEK_			1	0	0	P30519	P30519	P30519	HMOX2	Heme oxygenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.354861	1636.69517	1.9964	0.0016358	1.6604	0.0013605	3.6568	0.0029962	819.356867914968	6.5072	0.20393	6.5072	6.4185	6.6225	0	375	37	1.07392668217569	0.0240806587960416	1.07392668217569	433.766208008194	0	9.72634000594593						356	24	3	NaN	NaN	NaN	5.6843E-05	1	22679	70.195	67.894	1	63200			17025	910	14348	14763	17025	17025		
SAEVPEAASAEEQK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SAEVPEAASAEEQK_			1	0	0	P56211	P56211	P56211	ARPP19	cAMP-regulated phosphoprotein 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.346642	1486.67873	1.3233	0.00098502	-1.0135	-0.00075442	0.3098	0.0002306	744.345878262232	7.0747	0.18629	7.0747	6.9683	7.1545	0	453	46	1.02166545906632	0.0301985912511542	1.02166545906632	413.006869012689	0	12.2077393441796						464	22	4	NaN	NaN	NaN	5.277E-06	1	18123	81.799	63.462	1	109700			17026	1285	14349	14764	17026	17026		
SAFLCGVMK	9	Unmodified	_SAFLCGVMK_			0	0	0	O43390;O60506	O43390;O60506	O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.751356	1011.48816	0.23454	0.00011886	0.37455	0.00018981	0.6091	0.00030866	506.751251895877	10.152	0.3192	10.152	9.9839	10.303	0	708	58	0.849494101904619	0.0386991694587414	0.849494101904619	344.890537122359	0	15.7116774688485						790	37	3	NaN	NaN	NaN	0.0082029	1	4541	72.492	57.957	1	463360			17027	263;196	14350	14765	17027	17027		
SAFLLQNLLVGHPEHK	16	Unmodified	_SAFLLQNLLVGHPEHK_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.668577	1801.9839	-0.69477	-0.00041802	-1.3868	-0.00083442	-2.0816	-0.0012524	602.001983713816	14.019	0.15072	14.019	13.966	14.116	0	714	55	0.845418525735192	0.0366700093761401	0.845418525735192	511.808629760995	0	22.1996877059254						694	18	4	NaN	NaN	NaN	1.2266E-08	1	27269	110.58	104.2	1	306670			17028	3134	14351	14766	17028	17028		
SAFLLQNLLVGHPEHK	16	Unmodified	_SAFLLQNLLVGHPEHK_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.999228	1801.9839	1.4253	0.0012856	0.61936	0.00055866	2.0446	0.0018443	901.999668178909	14.01	0.10637	14.01	13.974	14.081	-1.7764E-15	189	31	1.1977968526266	0.0198967707037836	1.1977968526266	483.425548737437	0	8.03024926512978						297	13	4	NaN	NaN	NaN	1.3609E-06	1	27271	115.35	106.09	1	76943			17029	3134	14351	14766	17029	17029		
SAFPHLQDAQVK	12	Unmodified	_SAFPHLQDAQVK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.851501	1339.68845	1.6838	0.0011296	-1.7685	-0.0011864	-0.084643	-5.6783E-05	670.849918750903	6.9683	0.26609	6.9683	6.853	7.1191	0	498	43	0.991429299781895	0.0282574968538493	0.991429299781895	401.189228276019	0	11.4346059353922						546	31	4	NaN	NaN	NaN	0.0060326	1	13584	46.068	28.598	1	211450			17030	135	14352	14767	17030	17030		
SAFPHLQDAQVK	12	Unmodified	_SAFPHLQDAQVK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.570093	1339.68845	0.25458	0.00011394	0.59986	0.00026848	0.85444	0.00038242	447.570395816537	6.9683	0.14184	6.9683	6.9062	7.0481	0	717	49	0.84338031290707	0.032613681095942	0.84338031290707	511.916220013442	0	19.7959000131393						467	17	4	NaN	NaN	NaN	0.036727	1	13585	22.898	21.099	1	146950			17031	135	14352	14767	17031	17031		
SAFQEEDFPALVSSVPK	17	Unmodified	_SAFQEEDFPALVSSVPK_			0	0	0	Q86UK7	Q86UK7	Q86UK7	ZNF598	Zinc finger protein 598	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.962174	1849.90979	2.2791	0.0021103	-1.7899	-0.0016574	0.4892	0.00045298	925.961584070557	15.5	0.24842	15.5	15.367	15.615	0	273	82	1.14198628764525	0.0539321328364528	1.14198628764525	460.809456078906	0	21.7624651595303						1022	29	4	NaN	NaN	NaN	0.00013459	1	28488	46.206	44.618	1	239560			17032	2166	14353	14768	17032	17032		
SAFSCFHYSTEEIK	14	Unmodified	_SAFSCFHYSTEEIK_			0	0	0	Q8N4Q1	Q8N4Q1	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.379962	1704.74537	1.2985	0.0011081	1.8594	0.0015868	3.1579	0.0026949	853.381632389032	9.4519	0.044344	9.4519	9.4253	9.4696	0	264	19	1.14797626962532	0.0119774933680286	1.14797626962532	463.519946283544	0	4.83616885597485						71	6	3	NaN	NaN	NaN	0.0045482	1	24616	38.584	34.848	1	11117			17033	2253	14354	14769	17033	17033		
SAFSSAETTELSGK	14	Unmodified	_SAFSSAETTELSGK_			0	0	0	Q96LJ7	Q96LJ7	Q96LJ7	DHRS1	Dehydrogenase/reductase SDR family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.838453	1413.66235	1.7487	0.0012378	0.37464	0.00026518	2.1233	0.001503	707.83837148215	7.1368	0.14186	7.1368	7.0925	7.2343	0	474	34	1.00756305028564	0.0221762449945386	1.00756305028564	407.499942225778	0	8.9689856644676						255	17	3	NaN	NaN	NaN	0.00010711	1	15871	99.589	88.887	1	62428			17034	2582	14355	14770	17034	17034		
SAGGLMFNTGIGQHILK	17	Unmodified	_SAGGLMFNTGIGQHILK_			0	0	0	Q9UNQ2	Q9UNQ2	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.978535	1742.91377	0.20983	0.00012212	-1.2141	-0.0007066	-1.0043	-0.00058449	582.312125176029	12.963	0.088663	12.963	12.928	13.017	0	666	37	0.877991458330206	0.0244059657771015	0.877991458330206	531.665381588513	0	14.7789673633008						284	11	4	NaN	NaN	NaN	0.00031903	1	25688	72.846	64.04	1	74317			17035	3304	14356	14771	17035	17035		
SAGGLMFNTGIGQHILK	17	Unmodified	_SAGGLMFNTGIGQHILK_			0	0	0	Q9UNQ2	Q9UNQ2	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.464164	1742.91377	2.29	0.001998	-1.1487	-0.0010022	1.1413	0.00099574	872.463710197164	12.963	0.12414	12.963	12.919	13.043	0	225	34	1.17390432875292	0.0219210434854844	1.17390432875292	473.905246154171	0	8.84952653678414						314	15	4	NaN	NaN	NaN	0.00018219	1	25689	59.731	50.469	1	78610			17036	3304	14356	14771	17036	17036		
SAGHHLIPVK	10	Unmodified	_SAGHHLIPVK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	353.541697	1057.60326	-0.46822	-0.00016554	0.96794	0.00034221	0.49972	0.00017667	353.541996357545	2.9424	0.12414	2.9424	2.9247	3.0488	0	891	22	0.724677416575734	0.0143831732446839	0.724677416575734	441.059569818822	0	8.75401393616755						152	15	3	NaN	NaN	NaN	0.05455	1	5667	25.254	17.607	1	32595			17037	3005	14357	14772	17037	17037		
SAGQGEVLVYVEDPAGHQEEAK	22	Unmodified	_SAGQGEVLVYVEDPAGHQEEAK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.704633	2312.09207	2.0314	0.0015677	-0.67141	-0.00051813	1.36	0.0010495	772.03839512755	9.8864	0.12415	9.8864	9.8243	9.9484	0	513	139	0.981336640919867	0.0927564717571623	0.981336640919867	593.09110472262	0	56.0592930200395						1074	15	4	NaN	NaN	NaN	1.4103E-06	1	35734	63.421	61.688	1	264500			17038	792	14358	14773	17038	17038		
SAGVEQLMYIK	11	Unmodified	_SAGVEQLMYIK_			0	0	0	Q14320	Q14320	Q14320	FAM50A	Protein FAM50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.826106	1237.63766	0.15333	9.504E-05	-4.0236	-0.0024939	-3.8703	-0.0023989	619.822769942153	11.926	0.21282	11.926	11.864	12.077	0	546	55	0.959108205975751	0.0364216673662339	0.959108205975751	388.436851312201	0	14.750700393484						469	25	3	NaN	NaN	NaN	0.00086114	1	10553	57.032	6.1979	1	115320			17039	1747	14359	14774	17039	17039		
SAGVQCFGPTAEAAQLESSK	20	Unmodified	_SAGVQCFGPTAEAAQLESSK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.989716	2036.94732	1.3511	0.00091871	0.091173	6.1997E-05	1.4422	0.00098071	680.32427024687	10.649	0.14188	10.649	10.578	10.72	0	531	46	0.969216233931596	0.0303198952028392	0.969216233931596	586.237975288783	0	18.3392243674853						463	17	4	NaN	NaN	NaN	1.6455E-07	1	32280	155.38	154.64	1	118910			17040	801	14360	14775	17040	17040		
SAGVQCFGPTAEAAQLESSK	20	Unmodified	_SAGVQCFGPTAEAAQLESSK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.48094	2036.94732	2.2324	0.0022759	-0.41955	-0.00042772	1.8128	0.0018481	1019.98208212278	10.649	0.20391	10.649	10.56	10.764	0	210	58	1.18386433251387	0.0378480292893026	1.18386433251387	477.381296787794	0	15.2618343223699						893	24	5	NaN	NaN	NaN	1.8115E-16	1	32281	164.48	156.11	1	246770			17041	801	14360	14775	17041	17041		
SAGYLDDVTLASAR	14	Unmodified	_SAGYLDDVTLASAR_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.862263	1437.70997	1.7691	0.0012735	1.1314	0.00081447	2.9005	0.002088	719.86250855667	11.27	0.19513	11.27	11.216	11.412	0	465	43	1.01360860968299	0.0281989788945491	1.01360860968299	409.878574382187	0	11.4029785835639						415	23	4	NaN	NaN	NaN	0.00014544	1	16608	66.953	58.952	1	131100			17042	639	14361	14776	17042	17042		
SAHLQWMVVR	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SAHLQWMVVR_			1	0	0	P46779	P46779	P46779	RPL28	60S ribosomal protein L28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.832057	1267.64956	0.90895	0.00057703	0.99357	0.00063075	1.9025	0.0012078	634.83294207901	13.026	0.17733	13.026	12.972	13.15	-1.7764E-15	504	49	0.987393073566096	0.0323032171840146	0.987393073566096	399.787685979765	0	13.0793184532446						532	21	4	NaN	NaN	NaN	4.0884E-05	1	11442	98.009	64.583	1	188700			17043	1088	14362	14777	17043	17043		
SAIDLTPIVVEDK	13	Unmodified	_SAIDLTPIVVEDK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.387582	1398.76061	1.0343	0.00072443	1.6256	0.0011386	2.6599	0.001863	700.389731618672	13.354	0.097578	13.354	13.309	13.407	0	477	40	1.0055473068722	0.0262010489671465	1.0055473068722	406.726660266605	0	10.5978754744391						212	12	3	NaN	NaN	NaN	0.00019629	1	15422	60	25.047	1	97078			17044	1776	14363	14778	17044	17044		
SAILGLPQPLLELNDSPVFK	20	Unmodified	_SAILGLPQPLLELNDSPVFK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.10663	2150.19871	0.70312	0.00075664	-0.25518	-0.0002746	0.44794	0.00048204	1076.60806518741	19.924	0.062081	19.924	19.907	19.969	0	111	64	1.24942920585258	0.041614527719587	1.24942920585258	503.639982230044	0	16.7746518994671						318	8	5	NaN	NaN	NaN	1.5258E-07	1	34026	84.105	72.425	1	123700			17045	2947	14364	14779	17045	17045		
SAINEVVTR	9	Unmodified	_SAINEVVTR_			0	0	0	P62899	P62899	P62899	RPL31	60S ribosomal protein L31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.774731	987.534909	-0.27309	-0.00013512	1.9261	0.000953	1.653	0.00081788	494.77574714658	5.443	0.18618	5.443	5.381	5.5671	0	750	46	0.820941264895493	0.0306199842244862	0.820941264895493	333.406697228436	0	12.4356129311789						584	22	4	NaN	NaN	NaN	5.3375E-06	1	4009	150.17	109.97	1	895890			17046	1412	14365	14780	17046	17046		
SAIPHPLIMGVIR	13	Unmodified	_SAIPHPLIMGVIR_			0	0	0	P61201	P61201	P61201	COPS2	COP9 signalosome complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.611235	1402.81188	-1.0249	-0.00048027	0.20759	9.728E-05	-0.81728	-0.00038299	468.611549211624	12.405	0.088661	12.405	12.361	12.449	0	714	31	0.845418525735192	0.0203835468475623	0.845418525735192	512.917880359954	0	12.366757203691						204	11	3	NaN	NaN	NaN	0.066241	1	15561	20.183	15.98	1	45292			17047	1333	14366	14781	17047	17047		
SAIPHPLIMGVIR	13	Unmodified	_SAIPHPLIMGVIR_			0	0	0	P61201	P61201	P61201	COPS2	COP9 signalosome complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.413214	1402.81188	1.2452	0.00087463	0.63312	0.00044471	1.8783	0.0013193	702.414250850908	12.396	0.10642	12.396	12.352	12.458	0	435	31	1.03374239103424	0.0201171086492766	1.03374239103424	418.119271889731	0	8.13679587285458						206	13	3	NaN	NaN	NaN	0.0058569	1	15562	33.723	26.583	1	60111			17048	1333	14366	14781	17048	17048		
SAIQNLHSFDPFADASK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SAIQNLHSFDPFADASK_			1	0	0	P41567	P41567	P41567	EIF1	Eukaryotic translation initiation factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.455047	1888.89554	1.1777	0.0011134	1.9244	0.0018194	3.102	0.0029328	945.959055394385	16.706	0.24829	16.706	16.644	16.892	0	180	88	1.203763835057	0.0577284207642754	1.203763835057	485.663035061391	0	23.2907479201279						1330	29	6	NaN	NaN	NaN	2.0741E-26	1	29344	222.25	202.7	1	887910			17049	1037	14367	14782	17049	17049		
SAIVHLINYQDDAELATR	18	Unmodified	_SAIVHLINYQDDAELATR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.016483	2028.02762	-0.41913	-0.00028376	-0.21928	-0.00014846	-0.63842	-0.00043222	677.350790900402	11.917	0.11527	11.917	11.864	11.979	0	621	37	0.908462957275599	0.0243518545960122	0.908462957275599	549.507229214772	0	14.7298467572368						391	14	5	NaN	NaN	NaN	2.3668E-05	1	32117	66.509	52.732	1	129700			17050	706	14368	14783	17050	17050		
SAIVHLINYQDDAELATR	18	Unmodified	_SAIVHLINYQDDAELATR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.02109	2028.02762	0.81424	0.00082647	-0.08321	-8.446E-05	0.73103	0.00074201	1015.52249218197	11.917	0.088677	11.917	11.882	11.97	0	177	43	1.2057522832638	0.0278363710639469	1.2057522832638	486.221866454466	0	11.2250687656961						303	11	4	NaN	NaN	NaN	0.00013463	1	32118	56.473	44.794	1	65382			17051	706	14368	14783	17051	17051		
SAIYQLEEEYENLLK	15	Unmodified	_SAIYQLEEEYENLLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.462007	1840.90946	1.2366	0.0011394	0.32457	0.00029908	1.5611	0.0014385	921.462066863765	18.869	0.12414	18.869	18.798	18.922	0	216	76	1.17988115188462	0.0498342760259569	1.17988115188462	476.117946679544	0	20.109646753693						553	15	4	NaN	NaN	NaN	9.5049E-07	1	28252	96.313	83.63	1	180390			17052	718	14369	14784	17052	17052		
SALAAAQTQVAEYK	14	Unmodified	_SALAAAQTQVAEYK_			0	0	0	O00461	O00461	O00461	GOLIM4	Golgi integral membrane protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.880456	1449.74636	1.8732	0.0013597	0.38635	0.00028044	2.2595	0.0016402	725.880982835935	8.068	0.079926	8.068	8.0414	8.1213	0	396	25	1.05987478976334	0.0160670595642813	1.05987478976334	428.553579730886	0	6.4966125796422						170	10	4	NaN	NaN	NaN	9.0331E-08	1	16983	135.5	118.85	1	40747			17053	82	14370	14785	17053	17053		
SALASVIMGLSPILGK	16	Unmodified	_SALASVIMGLSPILGK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.957652	1555.90075	1.011	0.00078752	-0.69996	-0.00054524	0.31103	0.00024228	778.957009183678	19.915	0.062044	19.915	19.898	19.96	0	387	52	1.06589869032374	0.0341354478713756	1.06589869032374	430.711247919301	0	13.7935448128742						229	8	5	NaN	NaN	NaN	4.855E-12	1	20245	130.99	119.64	1	120510			17054	905	14371	14786	17054	17054		
SALASVIMGLSPILGK	16	Unmodified	_SALASVIMGLSPILGK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.957652	1555.90075	1.2649	0.00098531	0.35883	0.00027951	1.6237	0.0012648	778.957952989105	19.915	0.053178	19.915	19.898	19.951	0	303	76	1.12200181823275	0.0499646417940307	1.12200181823275	453.381548515631	0	20.1898484472039						312	7	4	NaN	NaN	NaN	4.0264E-09	1	20246	124.06	112.7	1	110850			17055	905	14371	14786	17055	17055		
SALDEIMEIEEEK	13	Unmodified	_SALDEIMEIEEEK_			0	0	0	O60870	O60870	O60870	KIN	DNA/RNA-binding protein KIN17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.360904	1534.70725	0.92101	0.00070767	-0.85242	-0.00065497	0.068591	5.2702E-05	768.358867548431	16.005	0.097532	16.005	15.961	16.058	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.32848825067	0	7.32151682151709						188	12	3	NaN	NaN	NaN	3.8269E-05	1	19564	101.45	88.271	1	51422			17056	290	14372	14787	17056	17056		
SALLDFYMK	9	Unmodified	_SALLDFYMK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.27826	1086.54197	0.64395	0.00035049	0.8083	0.00043994	1.4522	0.00079043	544.27918252404	14.391	0.19507	14.391	14.267	14.462	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	373.426182528512	0	9.86935280192563						368	23	3	NaN	NaN	NaN	0.043426	1	6376	36.211	20.629	1	105290			17057	2420	14373	14788	17057	17057		
SALLNELHIR	10	Unmodified	_SALLNELHIR_			0	0	0		REV__Q2TAY7	REV__Q2TAY7			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.33803	1164.66151	-0.1244	-7.2567E-05	1.0532	0.00061439	0.92883	0.00054182	583.338653281206	12.006	0.1064	12.006	11.944	12.05	0	561	31	0.948993180460448	0.0202370558589571	0.948993180460448	384.60580355691	0	8.20162809440188						202	13	3	NaN	NaN	NaN	0.004671	1	8474	43.734	20.159	1	57941	+		17058	3496	14374	14789	17058	17058		
SALLPTIPDTEDEISPDK	18	Unmodified	_SALLPTIPDTEDEISPDK_			0	0	0	Q96SW2	Q96SW2	Q96SW2	CRBN	Protein cereblon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.988585	1939.96262	2.2027	0.0021388	-2.8516	-0.0027688	-0.64883	-0.00063	970.984692973053	14.329	0.15072	14.329	14.249	14.4	1.7764E-15	234	31	1.16792504164217	0.0199323285473259	1.16792504164217	471.113302064623	0	8.04022928266363						292	18	4	NaN	NaN	NaN	0.0026922	1	30510	29.98	27.878	1	56474			17059	2626	14375	14790	17059	17059		
SALLQEATDCLILLDR	16	Unmodified	_SALLQEATDCLILLDR_			0	0	0	Q6NXR4	Q6NXR4	Q6NXR4	TTI2	TELO2-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.985126	1829.9557	1.2939	0.0011852	-1.1543	-0.0010573	0.13966	0.00012793	915.984277517054	18.984	0.053196	18.984	18.958	19.011	0	282	43	1.13599383354359	0.0279705629566351	1.13599383354359	458.428602774206	0	11.287478608066						183	7	3	NaN	NaN	NaN	0.0039072	1	27987	66.509	57.353	1	34285			17060	2049	14376	14791	17060	17060		
SALQILFSEDSTK	13	Unmodified	_SALQILFSEDSTK_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.874839	1437.73512	0.21862	0.00015738	-0.64832	-0.00046671	-0.4297	-0.00030933	720.376062937135	14.799	0.20397	14.799	14.693	14.897	0	462	25	1.01562323939346	0.0161136996889994	1.01562323939346	410.693179956132	0	6.51598576070938						212	24	3	NaN	NaN	NaN	1.6938E-05	1	16613	99.276	87.319	1	48089			17061	2465	14377	14792	17061	17061		
SALQSINEWAAQTTDGK	17	Unmodified	_SALQSINEWAAQTTDGK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.44468	1818.87481	2.0056	0.001826	-0.28658	-0.00026091	1.719	0.0015651	910.444717667562	13.309	0.19513	13.309	13.23	13.425	0	309	73	1.11800162319566	0.0480155903203239	1.11800162319566	451.188545437996	0	19.3775070675208						958	23	5	NaN	NaN	NaN	1.2878E-34	1	27690	238.01	183.81	1	593860			17062	1164	14378	14793	17062	17062		
SALSGHLETVILGLLK	16	Unmodified	_SALSGHLETVILGLLK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.997812	1649.97161	-0.6289	-0.00034652	1.0522	0.00057977	0.42331	0.00023324	550.998600986468	19.366	0.2483	19.366	19.321	19.57	0	687	49	0.863749705078866	0.0325729325950134	0.863749705078866	523.27347026404	0	19.7332067095907						793	29	5	NaN	NaN	NaN	1.8718E-06	1	23058	117.21	101.59	1	536510			17063	558	14379	14794	17063	17063		
SALSGHLETVILGLLK	16	Unmodified	_SALSGHLETVILGLLK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.99308	1649.97161	0.96436	0.00079655	1.3093	0.0010815	2.2736	0.001878	825.994035306866	19.357	0.053204	19.357	19.339	19.392	0	210	28	1.18386433251387	0.0179230835476791	1.18386433251387	478.138469916317	0	7.23876504115327						103	7	3	NaN	NaN	NaN	0.0017361	1	23059	65.408	59.38	1	19017			17064	558	14379	14794	17064	17064		
SALSGHLETVILGLLK	16	Unmodified	_SALSGHLETVILGLLK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.99308	1649.97161	1.8659	0.0015412	1.5637	0.0012916	3.4297	0.0028329	825.994504844648	19.366	0.17736	19.366	19.321	19.499	0	270	91	1.14398322290989	0.0599534649854137	1.14398322290989	462.031308511698	0	24.2139721302564						516	21	5	NaN	NaN	NaN	1.0676E-12	1	23060	115.05	103.57	1	609890			17065	558	14379	14794	17065	17065		
SALTIQLIQNHFVDEYDPTIEDSYR	25	Unmodified	_SALTIQLIQNHFVDEYDPTIEDSYR_			0	0	0	P01116;P01112	P01116;P01112	P01112	KRAS;HRAS	GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	989.817204	2966.42978	0.45065	0.00044606	-1.5913	-0.0015751	-1.1406	-0.001129	990.150212984412	16.989	0.0798	16.989	16.954	17.034	0	429	34	1.03776581230406	0.0221242386339204	1.03776581230406	626.3685313204	0	13.3536166786447						275	10	5	NaN	NaN	NaN	2.6167E-13	1	38167	112.49	112.04	1	49602			17066	490;489	14380	14795	17066	17066		
SALTVQFVQGIFVEK	15	Unmodified	_SALTVQFVQGIFVEK_			0	0	0	P61224;A6NIZ1;P62834	P61224;P62834	P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1b-like protein;Ras-related protein Rap-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.464155	1664.91376	2.371	0.0019761	-0.70564	-0.00058813	1.6654	0.001388	833.46335543991	17.734	0.13299	17.734	17.69	17.823	0	339	79	1.09798411722691	0.0520455510466027	1.09798411722691	443.420081006824	0	21.0185576449099						569	16	4	NaN	NaN	NaN	3.8532E-08	1	23484	130.71	110.38	1	131200			17067	1401;1336	14381	14796	17067	17067		
SALVQIYELEEHK	13	Unmodified	_SALVQIYELEEHK_			0	0	0	P54619	P54619	P54619	PRKAG1	5-AMP-activated protein kinase subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.275234	1557.80387	-1.1277	-0.00058673	-1.2296	-0.00063973	-2.3573	-0.0012265	520.274490006738	11.616	0.10649	11.616	11.571	11.678	0	738	25	0.829104889055312	0.0163227098451795	0.829104889055312	502.532171229303	0	9.89342473687526						186	13	3	NaN	NaN	NaN	0.0023285	1	20295	40.533	39.354	1	47504			17068	1253	14382	14797	17068	17068		
SALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYK	34	Unmodified	_SALWDSGLDYLHGTGHGVGSFLNVHEGPCGISYK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	908.432218	3629.69977	0.97083	0.00088193	0.33876	0.00030774	1.3096	0.0011897	908.933804729791	16.041	0.062074	16.041	16.014	16.076	0	405	37	1.05384839605172	0.0241138939536367	1.05384839605172	847.375952592121	0	19.3894434305951						185	8	4	NaN	NaN	NaN	0.031088	1	38696	3.9006	3.5797	1	32249			17069	3005	14383	14798	17069	17069		
SALYYVDLIGGK	12	Unmodified	_SALYYVDLIGGK_			0	0	0	P13798	P13798	P13798	APEH	Acylamino-acid-releasing enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.853178	1297.6918	0.46024	0.00029909	2.0102	0.0013064	2.4705	0.0016055	649.853397719895	14.905	0.10641	14.905	14.834	14.941	0	531	46	0.969216233931596	0.0303115059679868	0.969216233931596	392.330102765728	0	12.2698277588318						311	13	3	NaN	NaN	NaN	0.0030574	1	12297	36.514	29.364	1	79766			17070	684	14384	14799	17070	17070		
SAMQSVVDDWIESYK	15	Unmodified	_SAMQSVVDDWIESYK_			0	0	0	Q8N3U4;Q8WVM7	Q8N3U4	Q8N3U4	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.406177	1756.7978	1.9963	0.0017556	0.065346	5.7466E-05	2.0616	0.001813	879.406159279145	17.761	0.12413	17.761	17.725	17.849	0	237	49	1.16593139812432	0.0319048822592995	1.16593139812432	470.657214042394	0	12.8791994303179						434	15	4	NaN	NaN	NaN	2.4835E-06	1	26061	102.03	96.001	1	123430			17071	2249	14385	14800	17071	17071		
SANVNEFPVLK	11	Unmodified	_SANVNEFPVLK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.32987	1216.64519	1.1062	0.00067406	0.26907	0.00016395	1.3753	0.00083801	609.330189370927	10.232	0.3458	10.232	10.064	10.41	0	582	55	0.934820374997243	0.0364569900651212	0.934820374997243	378.67236469793	0	14.7678153011685						808	40	4	NaN	NaN	NaN	0.052204	1	9932	44.57	36.923	1	559340			17072	1264	14386	14801	17072	17072		
SAQFEHTLLVTDTGCEILTR	20	Unmodified	_SAQFEHTLLVTDTGCEILTR_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.382725	2290.12635	0.87089	0.00066569	-0.97354	-0.00074416	-0.10265	-7.8465E-05	764.716751593273	13.256	0.1064	13.256	13.212	13.318	0	576	34	0.938871150116794	0.0222746380512064	0.938871150116794	567.4586977603	0	13.4629092608151						348	13	5	NaN	NaN	NaN	1.2926E-07	1	35564	125.75	120.67	1	90310			17073	1236	14387	14802	17073	17073		
SASAPAAEGEGTPTQPASEK	20	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SASAPAAEGEGTPTQPASEK_			1	0	0	P35659	P35659	P35659	DEK	Protein DEK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.447616	1926.88068	1.5264	0.0014721	-0.29835	-0.00028774	1.2281	0.0011844	964.948983276248	5.4785	0.05318	5.4785	5.4519	5.5051	0	126	31	1.23951419873743	0.0198395317796147	1.23951419873743	500.014772945275	0	8.0031830117228						123	7	3	NaN	NaN	NaN	6.9171E-16	1	30208	129.04	123.66	1	19991			17074	979	14388	14803	17074	17074		
SASLDNGGCALTTFSVLEGEK	21	Unmodified	_SASLDNGGCALTTFSVLEGEK_			0	0	0	P35610	P35610	P35610	SOAT1	Sterol O-acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.51243	2155.01031	1.3849	0.0014936	1.475	0.0015908	2.8598	0.0030844	1079.01617991333	15.18	0.088691	15.18	15.118	15.207	0	141	76	1.2295923935727	0.0496635180222542	1.2295923935727	495.636732980843	0	20.0188810125637						440	11	4	NaN	NaN	NaN	0.00029556	1	34107	40.372	39.101	1	97368			17075	974	14389	14804	17075	17075		
SASSGAEGDVSSEREP	16	Unmodified	_SASSGAEGDVSSEREP_			0	0	1	Q8TEA8	Q8TEA8	Q8TEA8	DTD1	D-tyrosyl-tRNA(Tyr) deacylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.839713	1563.66487	2.4062	0.0018836	-1.3128	-0.0010277	1.0934	0.00085592	782.839289080689	3.5898	0.09754	3.5898	3.5633	3.6608	0	477	31	1.0055473068722	0.0201616152840689	1.0055473068722	406.306502515072	0	8.14660368054228						185	12	3	NaN	NaN	NaN	0.0044999	1	20452	79.235	77.393	1	35392			17076	2351	14390	14805	17076	17076		
SATDADVVNSGWLVVGK	17	Unmodified	_SATDADVVNSGWLVVGK_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.441409	1716.86826	2.1273	0.0018283	3.6808	0.0031634	5.808	0.0049917	859.946589904762	14.205	0.1862	14.205	14.143	14.329	0	303	43	1.12200181823275	0.0280013716258987	1.12200181823275	453.006401497291	0	11.3055080581032						335	22	3	NaN	NaN	NaN	0.00020029	1	24968	78.157	72.458	1	65278			17077	2408	14391	14806	17077	17077		
SAVCIADPLPTPSQEK	16	Unmodified	_SAVCIADPLPTPSQEK_			0	0	0	Q99575	Q99575	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.929819	1711.84509	2.9381	0.0025177	-2.3981	-0.002055	0.53996	0.00046271	857.429210514192	10.871	0.16847	10.871	10.791	10.959	0	351	34	1.08996939197032	0.0220450526465417	1.08996939197032	440.08372489059	0	8.90086359816183						437	20	4	NaN	NaN	NaN	0.041258	1	24818	25.705	7.1748	1	86874			17078	2652	14392	14807	17078	17078		
SAVDYNTCAGVWSQDK	16	Unmodified	_SAVDYNTCAGVWSQDK_			0	0	0	Q9Y5A9	Q9Y5A9	Q9Y5A9	YTHDF2	YTH domain-containing family protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.896508	1799.77846	2.1315	0.0019203	1.9339	0.0017423	4.0655	0.0036626	900.899151637134	8.8221	0.11549	8.8221	8.7866	8.9021	0	309	37	1.11800162319566	0.0240077828755938	1.11800162319566	451.224762720703	0	9.68952630008312						322	14	4	NaN	NaN	NaN	3.0879E-12	1	27195	135.13	124.16	1	79711			17079	3426	14393	14808	17079	17079		
SAVEAQNEVTENPK	14	Unmodified	_SAVEAQNEVTENPK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.367909	1514.72127	3.3749	0.0025594	-3.3656	-0.0025523	0.0093212	7.0689E-06	758.365652591643	3.909	0.10638	3.909	3.8824	3.9888	0	471	70	1.00957851518677	0.046349317468141	1.00957851518677	408.051057572088	0	18.7334493812207						432	13	3	NaN	NaN	NaN	8.8013E-08	1	18958	126.17	104.17	1	111740			17080	1927	14394	14809	17080	17080		
SAVEDEGLK	9	Unmodified	_SAVEDEGLK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.237647	946.460741	0.41962	0.000199	1.1202	0.00053126	1.5399	0.00073026	474.238789487323	3.3947	0.31045	3.3947	3.3149	3.6253	0	759	49	0.814815566123307	0.0326772198028354	0.814815566123307	331.116088076411	0	13.279021216797						967	36	5	NaN	NaN	NaN	0.012881	1	3172	62.969	11.539	1	869130			17081	618	14395	14810	17081	17081		
SAVENCQDSWR	11	Unmodified	_SAVENCQDSWR_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.288408	1350.56226	2.4427	0.001652	-1.0129	-0.00068501	1.4298	0.00096695	676.288152551948	4.5652	0.26599	4.5652	4.4588	4.7248	0	564	52	0.946969335010767	0.0344101487926826	0.946969335010767	383.166666340725	0	13.9231773550836						849	31	5	NaN	NaN	NaN	2.0135E-11	1	13892	155.57	138.92	1	464330			17082	1205	14396	14811	17082	17082		
SAVGFDYQGK	10	Unmodified	_SAVGFDYQGK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.258914	1070.50327	0.68232	0.0003659	-0.14389	-7.7164E-05	0.53843	0.00028874	536.258917357366	6.2767	0.19511	6.2767	6.2234	6.4185	0	681	55	0.867820189810857	0.0366343767135493	0.867820189810857	352.07002399061	0	14.8623713067007						605	23	4	NaN	NaN	NaN	2.2684E-05	1	5964	111.39	91.905	1	336200			17083	1742	14397	14812	17083	17083		
SAVGFEYQGK	10	Unmodified	_SAVGFEYQGK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.266739	1084.51892	1.3208	0.00071756	-0.29638	-0.00016101	1.0244	0.00055655	543.266933409653	5.9751	0.33703	5.9751	5.8953	6.2323	0	672	46	0.873923798053065	0.0305053430673474	0.873923798053065	354.488014037528	0	12.3738231017034						732	39	4	NaN	NaN	NaN	0.0015496	1	6316	79.059	62.601	1	372910			17084	1742	14398	14813	17084	17084		
SAVQKPPSTGSAPAIESVD	19	Unmodified	_SAVQKPPSTGSAPAIESVD_			0	0	1	Q9NUQ3	Q9NUQ3	Q9NUQ3	TXLNG	Gamma-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.967987	1839.92142	2.8504	0.0026251	-1.8853	-0.0017363	0.96515	0.00088888	920.96650995657	7.4294	0.11527	7.4294	7.3674	7.4826	0	294	58	1.12800004657306	0.0379992536574683	1.12800004657306	455.184177494628	0	15.3339169391286						304	14	2	NaN	NaN	NaN	0.0082187	1	28228	83.061	68.112	1	84034			17085	3054	14399	14814	17085	17085		
SAYDSTMETMNYAQIR	16	Unmodified	_SAYDSTMETMNYAQIR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.911301	1879.80805	2.4166	0.0022738	-0.0163	-1.5337E-05	2.4003	0.0022585	941.413144854012	11.412	0.15075	11.412	11.367	11.518	0	276	55	1.13998907770044	0.0359621578176168	1.13998907770044	459.949088244273	0	14.5095791030518						669	18	6	NaN	NaN	NaN	9.0068E-45	1	29145	240.94	231.67	1	251620			17086	1235	14400	14815	17086	17086		
SAYDSTMETMNYAQIR	16	Oxidation (M)	_SAYDSTM(Oxidation (M))ETMNYAQIR_	SAYDSTM(0.996)ETM(0.004)NYAQIR	SAYDSTM(24)ETM(-24)NYAQIR	0	1	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.908758	1895.80296	1.8271	0.0017337	-1.6914	-0.001605	0.13567	0.00012874	948.906923022284	9.3189	0.062105	9.3189	9.2923	9.3544	0	294	40	1.12800004657306	0.0259851749816993	1.12800004657306	455.083771754343	0	10.4835380781186						192	8	3	NaN	NaN	NaN	0.0039682	1	29510	57.003	55.951	2	38825			17087	1235	14400	14816	17087	17087	438	
SAYEFSETESMLK	13	Unmodified	_SAYEFSETESMLK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.342514	1520.67048	1.1155	0.00084925	-2.7496	-0.0020934	-1.6341	-0.0012441	761.340407420641	13.132	0.062098	13.132	13.114	13.176	0	432	25	1.035754240522	0.0160936862293779	1.035754240522	418.615918989346	0	6.50450945529502						127	8	3	NaN	NaN	NaN	0.070777	1	19148	13.175	7.6786	1	34057			17088	614	14401	14817	17088	17088		
SAYEFSETESMLK	13	Unmodified	_SAYEFSETESMLK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.342514	1520.67048	1.4538	0.0011068	-2.9454	-0.0022425	-1.4916	-0.0011356	761.340310177412	11.713	0.16847	11.713	11.669	11.837	0	390	46	1.06389100039157	0.0301195105360905	1.06389100039157	429.987821625082	0	12.1732609064844						580	20	5	NaN	NaN	NaN	0.06126	1	19149	23.836	19.59	1	336580			17089	614	14401	14817	17089	17089		
SAYEFSETESMLK	13	Unmodified	_SAYEFSETESMLK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.342514	1520.67048	2.2298	0.0016976	0.35881	0.00027318	2.5886	0.0019708	761.342774918283	11.376	0.17739	11.376	11.305	11.483	0	420	91	1.04379886199097	0.0602764725628377	1.04379886199097	421.867263960162	0	24.361657678713						695	21	3	NaN	NaN	NaN	7.471E-06	1	19150	115.41	107.85	1	333300			17090	614	14401	14817	17090	17090		
SAYEFSETESMLK	13	Oxidation (M)	_SAYEFSETESM(Oxidation (M))LK_	SAYEFSETESM(1)LK	SAYEFSETESM(95)LK	0	1	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.339972	1536.66539	2.1236	0.0016338	3.3974	0.0026138	5.5211	0.0042476	769.340795886871	8.6002	0.10642	8.6002	8.5559	8.6623	0	411	34	1.04982941439551	0.0221028774104899	1.04982941439551	424.264750457546	0	8.93237667031343						208	13	3	NaN	NaN	NaN	0.001307	1	19622	94.66	86.658	1	71680			17091	614	14401	14818	17091	17091	170	
SAYQEAMDISK	11	Unmodified	_SAYQEAMDISK_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.787178	1241.5598	1.9418	0.0012074	-0.076763	-4.773E-05	1.865	0.0011596	621.787272524957	7.3762	0.28373	7.3762	7.2875	7.5713	0	585	49	0.932794566565362	0.0324106998985512	0.932794566565362	377.766699727474	0	13.1258088065581						858	33	5	NaN	NaN	NaN	0.0019027	1	10660	73.655	57.198	1	430510			17092	933	14402	14819	17092	17092		
SAYQEAMDISK	11	Oxidation (M)	_SAYQEAM(Oxidation (M))DISK_	SAYQEAM(1)DISK	SAYQEAM(49)DISK	0	1	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.784635	1257.55472	1.3564	0.00085422	1.2491	0.00078668	2.6055	0.0016409	629.785163661022	5.2835	0.097562	5.2835	5.2391	5.3366	0	540	31	0.963152256458504	0.0202202547375568	0.963152256458504	390.006502313619	0	8.18773020901364						222	12	3	NaN	NaN	NaN	0.0071317	1	11129	48.785	31.39	1	61396			17093	933	14402	14820	17093	17093	326	
SAYQTIDSAEAPADPFAVPEGR	22	Unmodified	_SAYQTIDSAEAPADPFAVPEGR_			0	0	0	Q6RW13	Q6RW13	Q6RW13	AGTRAP	Type-1 angiotensin II receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1146.54258	2291.07061	1.1121	0.0012751	0.20291	0.00023264	1.315	0.0015077	1147.0439748691	13.309	0.13301	13.309	13.221	13.354	0	102	100	1.25537494996371	0.0654211947185954	1.25537494996371	505.836927886603	0	26.3606153333568						997	16	5	NaN	NaN	NaN	2.3873E-11	1	35572	89.489	84.892	1	254980			17094	2082	14403	14821	17094	17094		
SCAAFEVTR	9	Unmodified	_SCAAFEVTR_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.745116	1039.47568	0.87059	0.00045335	-0.63047	-0.00032831	0.24012	0.00012504	520.744898516311	5.576	0.18625	5.576	5.5317	5.7179	0	702	40	0.853568545818287	0.0264820512722772	0.853568545818287	346.419485154869	0	10.747699891861						287	22	4	NaN	NaN	NaN	0.011627	1	5209	62.969	57.221	1	65776			17095	2516	14404	14822	17095	17095		
SCAEWVSLSK	10	Unmodified	_SCAEWVSLSK_			0	0	0	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.779156	1165.54376	0.83518	0.00048756	0.51971	0.0003034	1.3549	0.00079096	583.779574939424	8.7156	0.31957	8.7156	8.5914	8.9109	0	642	88	0.894250814548268	0.0588462850369675	0.894250814548268	362.416733171838	0	23.8488777817552						993	37	5	NaN	NaN	NaN	7.4057E-06	1	8484	142.56	122.33	1	507670			17096	372	14405	14823	17096	17096		
SCAHDWVYE	9	Unmodified	_SCAHDWVYE_			0	0	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.732206	1165.44986	1.4053	0.00082031	1.0371	0.00060538	2.4424	0.0014257	583.733115042233	7.1014	0.35476	7.1014	7.0392	7.394	0	603	49	0.920633820089869	0.0324421500815294	0.920633820089869	373.109432466898	0	13.1479769054583						1233	41	5	NaN	NaN	NaN	0.012838	1	8479	60.709	38.322	1	1365400			17097	805	14406	14824	17097	17097		
SCALAEDPQELR	12	Unmodified	_SCALAEDPQELR_			0	0	0	Q8IX12	Q8IX12	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.827366	1387.64018	1.3561	0.00094224	-1.2258	-0.00085174	0.13026	9.0505E-05	694.827737804901	7.128	0.20402	7.128	7.0392	7.2432	0	510	52	0.983355730988811	0.0343055628620362	0.983355730988811	397.781760693627	0	13.8771014057393						666	24	5	NaN	NaN	NaN	0.00041012	1	15066	60.547	56.655	1	187360			17098	2210	14407	14825	17098	17098		
SCCTSVNEVICHGIPDR	17	Unmodified	_SCCTSVNEVICHGIPDR_			0	0	0	P53582	P53582	P53582	METAP1	Methionine aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.629248	2002.86591	1.0188	0.00068119	-0.27622	-0.00018469	0.74257	0.0004965	668.96375123817	9.1326	0.1153	9.1326	9.0794	9.1947	0	591	34	0.928742107665821	0.0222931596374992	0.928742107665821	561.821529981582	0	13.4857426537294						333	14	5	NaN	NaN	NaN	1.0201E-06	1	31679	86.135	85.396	1	96980			17099	1236	14408	14826	17099	17099		
SCDGNQELLNFLR	13	Unmodified	_SCDGNQELLNFLR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.372472	1564.73039	1.8435	0.0014441	-3.9279	-0.003077	-2.0845	-0.0016329	783.868950735471	15.544	0.23066	15.544	15.393	15.624	-1.7764E-15	426	49	1.03977710643793	0.0321696140017538	1.03977710643793	420.135065914205	0	12.998538643886						498	27	5	NaN	NaN	NaN	1.2432E-05	1	20480	115.04	113.78	1	135700			17100	3238	14409	14827	17100	17100		
SCDLLLFLR	9	Unmodified	_SCDLLLFLR_			0	0	0	Q6PJG6	Q6PJG6	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.810259	1135.60597	-0.27784	-0.00015804	-1.2667	-0.0007205	-1.5445	-0.00087854	568.809652506034	17.326	0.12413	17.326	17.282	17.406	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	371.579875705105	0	8.2222885121032						240	15	3	NaN	NaN	NaN	0.0069061	1	7693	58.426	47.724	1	63413			17101	2077	14410	14828	17101	17101		
SCDPGLEDPCGLNR	14	Unmodified	_SCDPGLEDPCGLNR_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.337772	1588.66099	2.3165	0.0018424	-1.353	-0.0010761	0.96344	0.00076626	795.337600876662	7.261	0.14189	7.261	7.2077	7.3496	0	429	58	1.03776581230406	0.0382198802455282	1.03776581230406	419.266957380976	0	15.4411840436624						541	17	4	NaN	NaN	NaN	2.4875E-11	1	21226	165.39	154.6	1	147540			17102	2947	14411	14829	17102	17102		
SCENLAPFNTALK	13	Unmodified	_SCENLAPFNTALK_			0	0	0	Q13155	Q13155	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.861209	1463.70786	1.8676	0.0013687	0.11251	8.2457E-05	1.9801	0.0014512	732.861985283647	10.977	0.31037	10.977	10.844	11.154	0	456	61	1.01965166402748	0.0402842653635953	1.01965166402748	412.252443350672	0	16.2872159293426						1130	36	5	NaN	NaN	NaN	2.8641E-07	1	17386	145.95	128.48	1	410670			17103	1636	14412	14830	17103	17103		
SCFEDPEWK	9	Unmodified	_SCFEDPEWK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.247689	1196.48082	0.85753	0.00051387	1.1286	0.00067633	1.9862	0.0011902	599.248248839764	8.0414	0.1243	8.0414	7.9793	8.1036	0	606	31	0.918606045818476	0.0202819613609688	0.918606045818476	372.174673952401	0	8.2172683175715						248	15	3	NaN	NaN	NaN	0.012881	1	9326	39.01	33.514	1	56130			17104	2698	14413	14831	17104	17104		
SCFLCMVCK	9	Unmodified	_SCFLCMVCK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.752715	1203.49088	0.79245	0.00047765	-0.75262	-0.00045364	0.039828	2.4007E-05	602.752732864919	11.11	0.10643	11.11	11.057	11.163	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	372.149965910093	0	8.21558399355251						275	13	4	NaN	NaN	NaN	0.0054324	1	9557	53.878	51.279	1	78187			17105	791	14414	14832	17105	17105		
SCGSSTPDEFPTDIPGTK	18	Unmodified	_SCGSSTPDEFPTDIPGTK_			0	0	0	P41091	P41091	P41091	EIF2S3	Eukaryotic translation initiation factor 2 subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.420013	1894.82547	2.4445	0.0023184	-0.61645	-0.00058465	1.8281	0.0017338	948.419519089915	10.268	0.19507	10.268	10.206	10.401	0	303	61	1.12200181823275	0.040007475791868	1.12200181823275	452.665521300126	0	16.140798161765						1052	23	5	NaN	NaN	NaN	3.8027E-14	1	29489	176.58	171.77	1	346750			17106	1027	14415	14833	17106	17106		
SCLLHQFTEK	10	Unmodified	_SCLLHQFTEK_			0	0	0	P61106	P61106	P61106	RAB14	Ras-related protein Rab-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.544779	1261.61251	-1.3262	-0.00055904	-0.50322	-0.00021213	-1.8294	-0.00077117	421.544639125988	6.9505	0.133	6.9505	6.9062	7.0392	0	840	31	0.759569036796863	0.0205030308233051	0.759569036796863	461.335100196656	0	12.4528085282315						233	16	3	NaN	NaN	NaN	0.013377	1	11264	53.517	41.559	1	54599			17107	1329	14416	14834	17107	17107		
SCLLHQFTEK	10	Unmodified	_SCLLHQFTEK_			0	0	0	P61106	P61106	P61106	RAB14	Ras-related protein Rab-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.81353	1261.61251	1.6031	0.0010129	-0.25448	-0.00016078	1.3487	0.00085211	631.813551120012	6.9505	0.23948	6.9505	6.9151	7.1545	0	549	58	0.957085760909907	0.0384264728149466	0.957085760909907	387.536481491564	0	15.5593789804981						511	28	4	NaN	NaN	NaN	2.7988E-05	1	11265	118.91	81.317	1	155910			17108	1329	14416	14834	17108	17108		
SCLLLQFTDK	10	Unmodified	_SCLLLQFTDK_			0	0	0	P61019;Q8WUD1	P61019	P61019	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.818281	1223.62201	1.2879	0.00078922	-0.5635	-0.00034532	0.72437	0.0004439	612.818022381663	13.567	0.20393	13.567	13.504	13.708	0	558	34	0.951016745717027	0.0222592210224549	0.951016745717027	385.208474544816	0	9.01607738584141						523	24	4	NaN	NaN	NaN	0.0060394	1	10120	50.834	43.188	1	180110			17109	1322	14417	14835	17109	17109		
SCMLTGTPESVQSAK	15	Unmodified	_SCMLTGTPESVQSAK_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.373823	1594.73309	2.6292	0.0020991	-1.173	-0.00093647	1.4562	0.0011626	798.372905670248	6.8441	0.2039	6.8441	6.7821	6.986	0	399	115	1.0578662689527	0.0762765688806912	1.0578662689527	427.373662674531	0	30.8154230601004						1356	24	6	NaN	NaN	NaN	3.2378E-08	1	21417	140.57	129.6	1	684060			17110	2473	14418	14836	17110	17110		
SCMLTGTPESVQSAK	15	Oxidation (M)	_SCM(Oxidation (M))LTGTPESVQSAK_	SCM(1)LTGTPESVQSAK	SCM(110)LTGTPESVQSAK	0	1	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.37128	1610.72801	2.6005	0.0020969	0.63187	0.00050952	3.2323	0.0026065	806.372057028782	5.2213	0.16851	5.2213	5.1593	5.3278	0	408	43	1.0518390438467	0.028132878019673	1.0518390438467	424.902348131427	0	11.3645961330146						423	20	4	NaN	NaN	NaN	1.2103E-07	1	21905	112.73	94.996	1	99280			17111	2473	14418	14837	17111	17111	605	
SCNCLLLK	8	Unmodified	_SCNCLLLK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.254262	1006.49397	1.3595	0.00068555	-0.010903	-5.4978E-06	1.3486	0.00068005	504.254642418298	6.7644	0.74483	6.7644	6.658	7.4028	0	630	103	0.902373728295776	0.0691119439138577	0.902373728295776	366.383811739026	0	28.060986987814						2127	85	6	NaN	NaN	NaN	0.0032151	1	4421	98.009	81.461	1	2415100			17112	544	14419	14838	17112	17112		
SCNEQIEESEK	11	Unmodified	_SCNEQIEESEK_			0	0	0	Q99590	Q99590	Q99590	SCAF11	Protein SCAF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.785363	1351.55617	1.6189	0.0010956	1.7567	0.0011889	3.3755	0.0022845	676.785521718706	2.5256	0.053226	2.5256	2.5168	2.57	0	564	19	0.946969335010767	0.0121422325843117	0.946969335010767	383.163801098193	0	4.91300385220006						43	7	2	NaN	NaN	NaN	0.00090231	1	13918	69.276	65.931	1	6803.1			17113	2654	14420	14839	17113	17113		
SCPVVQSSQHLFLDLPK	17	Unmodified	_SCPVVQSSQHLFLDLPK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.006393	1953.99823	1.0278	0.0010052	0.49006	0.00047928	1.5179	0.0014845	978.508366287969	13.318	0.20399	13.318	13.185	13.389	0	93	67	1.26131825079847	0.0436051350877193	1.26131825079847	508.759940371204	0	17.5883809760642						801	24	4	NaN	NaN	NaN	1.4958E-06	1	30786	91.993	90.624	1	201050			17114	1284	14421	14840	17114	17114		
SCSGVEFSTSGHAYTDTGK	19	Unmodified	_SCSGVEFSTSGHAYTDTGK_			0	0	0	Q9Y277	Q9Y277	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.925994	1989.83743	2.2143	0.0022053	-0.68888	-0.00068607	1.5254	0.0015192	996.427058598756	5.8243	0.1596	5.8243	5.7889	5.9485	0	135	70	1.23356193185193	0.045671634018799	1.23356193185193	497.501067066547	0	18.4195751119796						701	19	5	NaN	NaN	NaN	5.6394E-11	1	31447	87.251	85.409	1	167970			17115	3334	14422	14841	17115	17115		
SCSGVEFSTSGHAYTDTGK	19	Unmodified	_SCSGVEFSTSGHAYTDTGK_			0	0	0	Q9Y277	Q9Y277	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.286421	1989.83743	1.4907	0.00099027	0.29871	0.00019843	1.7894	0.0011887	664.286186999586	5.8155	0.15958	5.8155	5.78	5.9396	0	537	58	0.965173861991602	0.0384211546657859	0.965173861991602	583.886379215215	0	23.2430547142902						466	19	4	NaN	NaN	NaN	2.432E-05	1	31448	62.711	59.422	1	111130			17116	3334	14422	14841	17116	17116		
SCSGVEFSTSGSSNTDTGK	19	Unmodified	_SCSGVEFSTSGSSNTDTGK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.399809	1906.78506	3.8756	0.0036989	-2.7242	-0.0026	1.1514	0.0010989	954.397405465308	5.1149	0.39016	5.1149	5.0617	5.4519	0	303	109	1.12200181823275	0.0720036208269053	1.12200181823275	452.644889527297	0	29.0481445440929						2112	45	5	NaN	NaN	NaN	1.7486E-36	1	29730	226.06	213.48	1	598790			17117	1070	14423	14842	17117	17117		
SCSLVLEHQPDNIK	14	Unmodified	_SCSLVLEHQPDNIK_			0	0	0	Q14318	Q14318	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.409054	1638.80356	2.376	0.0019493	-0.16358	-0.0001342	2.2124	0.0018151	820.409439882599	6.6047	0.12416	6.6047	6.5693	6.6934	0	315	46	1.11400032671325	0.0300241961633021	1.11400032671325	449.947370569541	0	12.1268439453693						438	15	4	NaN	NaN	NaN	3.3457E-08	1	22727	92.707	90.57	1	145800			17118	1746	14424	14843	17118	17118		
SCTVLNVEGDALGAGLLQNYVDR	23	Unmodified	_SCTVLNVEGDALGAGLLQNYVDR_			0	0	0	Q15758	Q15758	Q15758	SLC1A5	Neutral amino acid transporter B(0)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1232.61047	2463.20639	-0.10646	-0.00013122	0.0043909	5.4123E-06	-0.10207	-0.00012581	1233.11151208295	18.275	0.04435	18.275	18.248	18.293	0	66	22	1.27913350869533	0.0138468290460385	1.27913350869533	515.192908102237	0	5.57704733378398						77	6	3	NaN	NaN	NaN	0.06244	1	36638	30.392	27.646	1	12050			17119	1866	14425	14844	17119	17119		
SCVEEPEPEPEAAEGDGDK	19	Unmodified	_SCVEEPEPEPEAAEGDGDK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.91803	2043.82151	2.83	0.0028949	-1.5854	-0.0016217	1.2447	0.0012732	1023.41783210573	5.4697	0.30149	5.4697	5.3632	5.6647	0	279	91	1.13799159301878	0.0599864743251655	1.13799159301878	458.873134377577	0	24.1883873859114						1562	35	5	NaN	NaN	NaN	1.5678E-10	1	32411	146.34	138.38	1	551280			17120	1201	14426	14845	17120	17120		
SCVEEPEPEPEAAEGDGDKK	20	Unmodified	_SCVEEPEPEPEAAEGDGDKK_			0	0	1	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.979434	2171.91647	2.4408	0.0017695	-1.4209	-0.0010302	1.0198	0.00073937	725.312308723424	4.4233	0.133	4.4233	4.3613	4.4943	0	534	46	0.967195187796614	0.030328287920973	0.967195187796614	584.769592028751	0	18.3365889101252						424	16	4	NaN	NaN	NaN	1.9903E-05	1	34334	69.224	69.172	1	101690			17121	1201	14427	14846	17121	17121		
SCVLFNCAALASQIAAEQNLDNDEGLK	27	Unmodified	_SCVLFNCAALASQIAAEQNLDNDEGLK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	984.4673	2950.38007	1.1069	0.0010897	4.5546	0.0044839	5.6615	0.0055736	984.474424656637	17.513	0.16849	17.513	17.397	17.566	0	201	49	1.18983705239708	0.0318654545022787	1.18983705239708	718.173003772548	0	19.2336497929481						249	20	3	NaN	NaN	NaN	0.00066491	1	38147	57.71	54.137	1	64843			17122	2370	14428	14847	17122	17122		
SCYDLSCHAR	10	Unmodified	_SCYDLSCHAR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.50974	1267.50739	-0.33654	-0.00014253	-0.43854	-0.00018573	-0.77508	-0.00032826	423.509805820905	3.4657	0.18633	3.4657	3.4301	3.6164	0	855	28	0.749315378969369	0.0184617312654048	0.749315378969369	455.084513588828	0	11.2124323465512						349	22	4	NaN	NaN	NaN	0.00043007	1	11427	49.96	48.316	1	115510			17123	1035	14429	14848	17123	17123		
SCYDLSCHAR	10	Unmodified	_SCYDLSCHAR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.760972	1267.50739	2.2102	0.001403	-0.65257	-0.00041423	1.5577	0.00098875	634.760323135956	3.4657	0.15975	3.4657	3.439	3.5987	0	570	28	0.942920803299286	0.0182196558414446	0.942920803299286	381.781681953766	0	7.3770043331599						294	19	5	NaN	NaN	NaN	0.00068519	1	11428	103.8	102.16	1	78734			17124	1035	14429	14848	17124	17124		
SCYEDGWLIK	10	Unmodified	_SCYEDGWLIK_			0	0	0	P23434	P23434	P23434	GCSH	Glycine cleavage system H protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.792263	1269.56997	1.3672	0.00086924	0.62789	0.00039921	1.9951	0.0012684	635.792777438261	11.447	0.32822	11.447	11.341	11.669	0	546	76	0.959108205975751	0.0505401760734462	0.959108205975751	388.329036829127	0	20.4629861088604						943	38	5	NaN	NaN	NaN	0.00055671	1	11488	67.507	57.419	1	564520			17125	820	14430	14849	17125	17125		
SCYLSSLDLLLEHR	14	Unmodified	_SCYLSSLDLLLEHR_			0	0	0	Q9BQ69	Q9BQ69	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.290778	1704.85051	-0.13829	-7.8729E-05	-1.6564	-0.000943	-1.7947	-0.0010217	569.289672654316	16.129	0.10644	16.129	16.085	16.191	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	529.295339744938	0	12.3196825155042						316	13	4	NaN	NaN	NaN	0.00013256	1	24628	124.06	123.77	1	131020			17126	2693	14431	14850	17126	17126		
SCYLSSLDLLLEHR	14	Unmodified	_SCYLSSLDLLLEHR_			0	0	0	Q9BQ69	Q9BQ69	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.432529	1704.85051	1.4728	0.0012569	-1.4929	-0.0012741	-0.020137	-1.7186E-05	853.429746472538	16.129	0.10643	16.129	16.094	16.2	0	249	43	1.15795408347545	0.027935963941738	1.15795408347545	467.548481942668	0	11.279737011128						308	13	4	NaN	NaN	NaN	1.6247E-05	1	24630	86.243	78.241	1	74354			17127	2693	14431	14850	17127	17127		
SDAAVDTSSEITTK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDAAVDTSSEITTK_			1	0	0	P06454	P06454	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.846475	1465.6784	1.6817	0.0012341	1.3958	0.0010243	3.0775	0.0022584	733.847567095867	8.5116	0.47017	8.5116	8.414	8.8842	0	399	31	1.0578662689527	0.0200810554330217	1.0578662689527	427.697491031211	0	8.11881168539855						309	54	2	NaN	NaN	NaN	0.0016991	1	17436	51.454	48.109	1	93603			17128	539	14432	14851	17128	17128		
SDAAVDTSSEITTK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDAAVDTSSEITTK_			1	0	0	P06454	P06454	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.846475	1465.6784	2.8069	0.0020598	0.99445	0.00072977	3.8013	0.0027896	733.847316054006	7.7842	0.54113	7.7842	7.66	8.2011	0	396	103	1.05987478976334	0.0683416384885636	1.05987478976334	428.509541703883	0	27.6306639905698						2000	62	6	NaN	NaN	NaN	6.3788E-18	1	17437	189.56	176.96	1	2357100			17129	539	14432	14851	17129	17129		
SDAAVDTSSEITTKDLK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDAAVDTSSEITTKDLK_			1	0	1	P06454	P06454	P06454	PTMA	Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.94946	1821.88437	1.6902	0.0015414	-0.8262	-0.00075345	0.86404	0.00078796	911.949067518963	9.1415	0.053205	9.1415	9.1149	9.1681	0	189	19	1.1977968526266	0.0119380615222562	1.1977968526266	483.385225022911	0	4.81774730215631						79	7	2	NaN	NaN	NaN	1.5508E-06	1	27769	78.157	72.458	1	17483			17130	539	14433	14852	17130	17130		
SDAEDGEGTVASWELR	16	Unmodified	_SDAEDGEGTVASWELR_			0	0	0	Q96GM5	Q96GM5	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.384288	1720.75402	2.5536	0.0021996	0.49694	0.00042806	3.0505	0.0026277	861.384333896945	10.853	0.088668	10.853	10.817	10.906	0	372	31	1.07593298845566	0.0200644481678189	1.07593298845566	434.398341524726	0	8.10084187512439						213	11	3	NaN	NaN	NaN	6.1577E-18	1	25075	151.52	141.94	1	53456			17131	2544	14434	14853	17131	17131		
SDAEEDGGTVSQEEEDR	17	Unmodified	_SDAEEDGGTVSQEEEDR_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.869396	1851.72424	2.7744	0.0025715	-1.8543	-0.0017187	0.92014	0.00085285	926.867824895614	3.6253	0.062059	3.6253	3.6076	3.6696	0	390	52	1.06389100039157	0.0341307405307956	1.06389100039157	429.293646948306	0	13.7721910140408						210	8	3	NaN	NaN	NaN	1.2327E-13	1	28533	135.24	135.05	1	40149			17132	870	14435	14854	17132	17132		
SDAGLESDTAMK	12	Unmodified	_SDAGLESDTAMK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.774267	1223.53398	1.8768	0.00115	-0.14864	-9.1082E-05	1.7281	0.001059	612.774719257684	4.6805	0.31034	4.6805	4.6007	4.911	0	606	52	0.918606045818476	0.0344673973700341	0.918606045818476	372.080846672433	0	13.9609993363486						842	36	6	NaN	NaN	NaN	1.3347E-05	1	10110	110.88	94.232	1	325950			17133	3011	14436	14855	17133	17133		
SDAGLESDTAMK	12	Oxidation (M)	_SDAGLESDTAM(Oxidation (M))K_	SDAGLESDTAM(1)K	SDAGLESDTAM(43)K	0	1	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.771725	1239.5289	1.8252	0.001133	0.658	0.00040847	2.4832	0.0015415	620.772074248637	2.9247	0.10642	2.9247	2.907	3.0134	0	609	28	0.916577990479294	0.0182575606051391	0.916577990479294	371.205934286761	0	7.39414966606802						176	13	3	NaN	NaN	NaN	0.026985	1	10598	43.168	35.522	1	36053			17134	3011	14436	14856	17134	17134	632	
SDALETLGFLNHYQMK	16	Unmodified	_SDALETLGFLNHYQMK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.973338	1865.89818	0.54526	0.00033968	-1.0637	-0.00066265	-0.51843	-0.00032297	623.307088991773	15.038	0.1685	15.038	14.994	15.163	-1.7764E-15	609	94	0.916577990479294	0.0629133807759191	0.916577990479294	554.742892844629	0	38.07722988419						1328	20	5	NaN	NaN	NaN	1.7791E-12	1	28839	192.14	176.52	1	704970			17135	704	14437	14857	17135	17135		
SDALETLGFLNHYQMK	16	Unmodified	_SDALETLGFLNHYQMK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.956368	1865.89818	1.6551	0.0015458	1.2593	0.0011762	2.9145	0.002722	934.459328147947	15.038	0.23057	15.038	14.959	15.189	0	174	76	1.20774045859593	0.0497317157481028	1.20774045859593	487.311208277917	0	20.0662504252911						1079	27	6	NaN	NaN	NaN	3.83E-36	1	28840	232.48	207.79	1	889850			17136	704	14437	14857	17136	17136		
SDALETLGFLNHYQMK	16	Oxidation (M)	_SDALETLGFLNHYQM(Oxidation (M))K_	SDALETLGFLNHYQM(1)K	SDALETLGFLNHYQM(150)K	0	1	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	941.953826	1881.8931	2.4609	0.0023181	-0.98135	-0.00092439	1.4796	0.0013937	942.45393024872	13.895	0.266	13.895	13.744	14.01	0	162	130	1.21569043230068	0.0855856622266093	1.21569043230068	490.488182841157	0	34.5307940470851						1236	31	5	NaN	NaN	NaN	9.2148E-12	1	29181	145.08	111.55	1	584130			17137	704	14437	14858	17137	17137	235	
SDAPDTLLLEK	11	Unmodified	_SDAPDTLLLEK_			0	0	0	P53611	P53611	P53611	RABGGTB	Geranylgeranyl transferase type-2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.319168	1200.62378	1.1879	0.00071433	-1.2066	-0.00072553	-0.018635	-1.1206E-05	601.819632863934	10.108	0.17734	10.108	10.002	10.179	0	585	67	0.932794566565362	0.0445462106400273	0.932794566565362	377.908317340638	0	18.0472572528591						693	21	4	NaN	NaN	NaN	0.058595	1	9484	32.549	28.941	1	202430			17138	1239	14438	14859	17138	17138		
SDAYYCTGDVTAWTK	15	Unmodified	_SDAYYCTGDVTAWTK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.374877	1736.7352	3.2168	0.0027966	-1.2951	-0.001126	1.9216	0.0016706	869.373216858294	11.021	0.19509	11.021	10.968	11.163	0	342	73	1.09598084995137	0.0481082648963029	1.09598084995137	442.459954493866	0	19.4218545860008						1114	23	6	NaN	NaN	NaN	3.0251E-17	1	25504	166.71	159.16	1	789350			17139	611	14439	14860	17139	17139		
SDCSLFMFGSHNK	13	Unmodified	_SDCSLFMFGSHNK_			0	0	0	Q9H7B2	Q9H7B2	Q9H7B2	RPF2	Ribosome production factor 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.555238	1528.64388	-0.3929	-0.0002006	-0.40451	-0.00020652	-0.79741	-0.00040712	510.55527868604	10.356	0.13299	10.356	10.303	10.436	0	732	37	0.833184998970724	0.0244738587568686	0.833184998970724	505.08992957402	0	14.8364404198132						343	16	4	NaN	NaN	NaN	0.043145	1	19370	37.749	35.448	1	123780			17140	2914	14440	14861	17140	17140		
SDDDGFEIVPIEDPAK	16	Unmodified	_SDDDGFEIVPIEDPAK_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.907064	1745.79958	2.299	0.0020091	0.34028	0.00029737	2.6392	0.0023064	874.408801271567	14.444	0.15962	14.444	14.356	14.515	0	357	64	1.08596037261705	0.0420628401895933	1.08596037261705	438.396542186204	0	16.9805493447333						433	19	3	NaN	NaN	NaN	3.0485E-12	1	25771	115.05	108.67	1	90441			17141	2220	14441	14862	17141	17141		
SDDIYNQVSAYPLPEHR	17	Unmodified	_SDDIYNQVSAYPLPEHR_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.653433	2002.93847	0.64646	0.00043226	-0.42368	-0.00028329	0.22278	0.00014897	668.98778335652	10.64	0.062068	10.64	10.622	10.684	0	594	28	0.926715457081489	0.018242384517949	0.926715457081489	560.595414486255	0	11.0353151357418						154	8	3	NaN	NaN	NaN	7.1711E-05	1	31684	34.472	31.757	1	27711			17142	1592	14442	14863	17142	17142		
SDEFSLADALPEHSPAK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDEFSLADALPEHSPAK_			1	0	0	Q8NDC0	Q8NDC0	Q8NDC0	MAPK1IP1L	MAPK-interacting and spindle-stabilizing protein-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.439063	1854.86357	1.9431	0.001804	0.74735	0.00069386	2.6904	0.0024979	928.439372589839	14.152	0.27487	14.152	14.036	14.311	0	198	67	1.1918274123006	0.0438029779907059	1.1918274123006	480.911566663034	0	17.6748399580388						1473	32	5	NaN	NaN	NaN	5.9802E-15	1	28592	142.08	133.7	1	688440			17143	2305	14443	14864	17143	17143		
SDEGQLSPATR	11	Unmodified	_SDEGQLSPATR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.780741	1159.54693	1.5794	0.0009173	3.4391	0.0019973	5.0185	0.0029146	580.782498430529	3.51	0.2927	3.51	3.3415	3.6342	0	630	76	0.902373728295776	0.0507436123945042	0.902373728295776	365.730846317901	0	20.5663171747245						670	34	4	NaN	NaN	NaN	0.00029687	1	8335	114.39	103.03	1	265380			17144	1816	14444	14865	17144	17144		
SDENEDPSVVGEFK	14	Unmodified	_SDENEDPSVVGEFK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.3441	1550.67365	1.7975	0.0013955	0.69461	0.00053926	2.4921	0.0019347	776.345024150043	8.5825	0.19519	8.5825	8.5116	8.7068	0	456	52	1.01965166402748	0.0342297995657299	1.01965166402748	412.035868645255	0	13.8320817737992						507	23	4	NaN	NaN	NaN	6.7419E-08	1	20058	121.71	119.04	1	152680			17145	3136	14445	14866	17145	17145		
SDEREVAEAATGEDASSPPPK	21	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDEREVAEAATGEDASSPPPK_			1	0	1	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.001226	2183.98185	1.2393	0.00090344	0.68019	0.00049586	1.9195	0.0013993	729.336251450407	7.4472	0.19508	7.4472	7.4028	7.5979	0	498	28	0.991429299781895	0.0181567430371361	0.991429299781895	599.400586596681	0	10.977245104153						266	23	3	NaN	NaN	NaN	0.0022805	1	34500	56.943	55.849	1	58000			17146	2647	14446	14867	17146	17146		
SDFFELLSNHHLDSQSR	17	Unmodified	_SDFFELLSNHHLDSQSR_			0	0	0	O14776	O14776	O14776	TCERG1	Transcription elongation regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.988815	2030.94462	1.2223	0.00082873	-0.91609	-0.0006211	0.30625	0.00020763	678.322553961894	13.504	0.13301	13.504	13.46	13.593	0	591	43	0.928742107665821	0.0283672188304905	0.928742107665821	561.768118020149	0	17.1584759690948						489	16	5	NaN	NaN	NaN	1.7741E-10	1	32167	117.41	112.07	1	164860			17147	119	14447	14868	17147	17147		
SDFYDIVLVATPLNR	15	Unmodified	_SDFYDIVLVATPLNR_			0	0	0	Q9UHG3	Q9UHG3	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.956694	1721.89884	1.773	0.0015282	-5.0971	-0.0043935	-3.3242	-0.0028653	861.952936454851	18.718	0.16847	18.718	18.594	18.763	0	330	61	1.10399226369747	0.0400515700611948	1.10399226369747	445.724675351294	0	16.1703787697263						386	20	3	NaN	NaN	NaN	0.0013035	1	25111	65.408	58.268	1	81686			17148	3217	14448	14869	17148	17148		
SDGAEGQGQGQLLIK	15	Unmodified	_SDGAEGQGQGQLLIK_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.886269	1499.75799	1.7195	0.0012912	-0.72883	-0.00054727	0.9907	0.00074391	750.885410835098	6.9239	0.13303	6.9239	6.8796	7.0126	0	447	31	1.02569221487577	0.020133781351245	1.02569221487577	414.601328424247	0	8.13839899861233						225	16	3	NaN	NaN	NaN	0.004642	1	18520	65.879	61.896	1	64019			17149	1979	14449	14870	17149	17149		
SDGGYTYDTSDLAAIK	16	Unmodified	_SDGGYTYDTSDLAAIK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.886132	1675.75771	3.1191	0.0026166	-0.30193	-0.00025329	2.8172	0.0023633	838.885803149872	10.746	0.22169	10.746	10.676	10.897	0	345	46	1.09397730668811	0.0300614391365961	1.09397730668811	441.7783340437	0	12.1396416722086						720	26	5	NaN	NaN	NaN	8.0699E-18	1	23781	199.51	188.03	1	356490			17150	1250	14450	14871	17150	17150		
SDHLIQTDTVNLHR	14	Unmodified	_SDHLIQTDTVNLHR_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.284904	1647.83288	0.1047	5.7614E-05	0.5906	0.000325	0.6953	0.00038261	550.285276225756	6.1436	0.13299	6.1436	6.1081	6.2411	0	732	28	0.833184998970724	0.0183566683857203	0.833184998970724	504.762330107505	0	11.1208851801622						297	16	4	NaN	NaN	NaN	7.4669E-08	1	22973	140.57	126.11	1	126020			17151	1181	14451	14872	17151	17151		
SDHLIQTDTVNLHR	14	Unmodified	_SDHLIQTDTVNLHR_			0	0	0	P51151	P51151	P51151	RAB9A	Ras-related protein Rab-9A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.923717	1647.83288	2.8235	0.0023292	-2.0973	-0.0017301	0.72629	0.00059914	824.921899031172	6.1436	0.079788	6.1436	6.1081	6.1879	0	363	28	1.08195024817156	0.0180492926905949	1.08195024817156	436.98220123129	0	7.28981731270267						181	10	4	NaN	NaN	NaN	5.9643E-06	1	22974	93.162	85.605	1	41946			17152	1181	14451	14872	17152	17152		
SDHLTVVNAFEGWEEAR	17	Unmodified	_SDHLTVVNAFEGWEEAR_			0	0	0	Q9H2U1	Q9H2U1	Q9H2U1	DHX36	ATP-dependent RNA helicase DHX36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.978028	1958.91225	-0.36758	-0.00024039	-1.3216	-0.0008643	-1.6892	-0.0011047	654.31168326023	14.427	0.079793	14.427	14.391	14.471	1.7764E-15	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	523.817906569719	0	14.7763677969208						204	10	3	NaN	NaN	NaN	0.0024578	1	30877	50.314	48.604	1	40852			17153	2873	14452	14873	17153	17153		
SDHPGISITDLSK	13	Unmodified	_SDHPGISITDLSK_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.236779	1368.68851	-1.3724	-0.00062751	-0.32259	-0.0001475	-1.695	-0.00077501	457.236538183969	8.3342	0.10646	8.3342	8.2987	8.4051	0	849	25	0.753417699604308	0.0164047100616799	0.753417699604308	457.211779874359	0	9.95520371974624						183	13	3	NaN	NaN	NaN	0.015697	1	14455	54.584	48.32	1	47932			17154	1579	14453	14874	17154	17154		
SDHPGISITDLSK	13	Unmodified	_SDHPGISITDLSK_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.351531	1368.68851	1.862	0.0012761	2.4144	0.0016547	4.2764	0.0029308	685.353134183947	8.343	0.15965	8.343	8.281	8.4406	0	474	46	1.00756305028564	0.0302361592844221	1.00756305028564	407.629632922536	0	12.2326384503701						531	19	4	NaN	NaN	NaN	1.2956E-05	1	14457	117.45	104.85	1	192010			17155	1579	14453	14874	17155	17155		
SDIDEIVLVGGSTR	14	Unmodified	_SDIDEIVLVGGSTR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.883195	1459.75184	2.0665	0.0015104	-2.2613	-0.0016528	-0.19481	-0.00014238	730.881682336683	12.857	0.18623	12.857	12.822	13.008	0	483	43	1.00151498427745	0.0282262646321653	1.00151498427745	404.929938938822	0	11.4123700527753						562	22	4	NaN	NaN	NaN	1.107E-07	1	17256	93.772	78.624	1	216430			17156	638	14454	14875	17156	17156		
SDIDEIVLVGGSTR	14	Unmodified	_SDIDEIVLVGGSTR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.883195	1459.75184	2.6757	0.0019556	-0.57664	-0.00042146	2.0991	0.0015342	730.882894469601	12.857	0.23944	12.857	12.786	13.026	0	369	106	1.07793901817685	0.0702983306915637	1.07793901817685	435.829499057708	0	28.4228381506371						1179	28	2	NaN	NaN	NaN	0.0002686	1	17257	79.889	64.914	1	604800			17157	638	14454	14875	17157	17157		
SDIGEVILVGGMTR	14	Unmodified	_SDIGEVILVGGMTR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.884684	1445.75481	2.1157	0.0015315	-0.9126	-0.00066062	1.2031	0.00087088	723.884078034491	14.524	0.36356	14.524	14.4	14.764	0	372	172	1.07593298845566	0.114565127810364	1.07593298845566	435.057967868096	0	46.3248847544559						2240	42	5	NaN	NaN	NaN	4.3768E-06	1	16863	124.46	106.99	1	865320			17158	1007	14455	14876	17158	17158		
SDIGEVILVGGMTR	14	Oxidation (M)	_SDIGEVILVGGM(Oxidation (M))TR_	SDIGEVILVGGM(1)TR	SDIGEVILVGGM(82)TR	0	1	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.882141	1461.74973	1.8188	0.0013311	1.541	0.0011278	3.3598	0.002459	731.883369429784	12.334	0.23941	12.334	12.272	12.511	0	357	58	1.08596037261705	0.0381040750145818	1.08596037261705	439.067029002309	0	15.4059424555386						779	28	4	NaN	NaN	NaN	0.00069755	1	17322	81.799	69.841	1	323140			17159	1007	14455	14877	17159	17159	362	
SDIYVCMISFAHNVAAQGK	19	Unmodified	_SDIYVCMISFAHNVAAQGK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.339803	2109.99758	0.088643	6.2435E-05	-0.92994	-0.000655	-0.8413	-0.00059256	704.673775160395	16.839	0.15964	16.839	16.777	16.936	0	531	46	0.969216233931596	0.0303198952028392	0.969216233931596	586.1006913838	0	18.334929728718						610	19	5	NaN	NaN	NaN	0.001559	1	33468	50.314	50.191	1	204140			17160	1161	14456	14878	17160	17160		
SDKPDMAEIEK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDKPDMAEIEK_			1	0	1	P62328	P62328	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.805568	1303.59658	2.3692	0.0015466	1.038	0.0006776	3.4072	0.0022242	652.806694446746	6.3653	0.37243	6.3653	6.2589	6.6313	0	480	103	1.00353128488872	0.068625428227629	1.00353128488872	406.201152398489	0	27.7776372791345						2306	43	6	NaN	NaN	NaN	3.7287E-08	1	12453	141.44	100.94	1	2298700			17161	1388	14457	14879	17161	17161		
SDKPDMAEIEK	11	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SDKPDM(Oxidation (M))AEIEK_	SDKPDM(1)AEIEK	SDKPDM(57)AEIEK	1	1	1	P62328	P62328	P62328	TMSB4X	Thymosin beta-4;Hematopoietic system regulatory peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.803025	1319.5915	2.8612	0.0018907	-2.8605	-0.0018902	0.00072097	4.7642E-07	660.801147171546	3.7317	0.36353	3.7317	3.6874	4.0509	0	519	64	0.97729762293174	0.0424361193214464	0.97729762293174	395.532236228118	0	17.1747610740145						738	42	4	NaN	NaN	NaN	0.0051407	1	12947	57.003	43.205	1	202500			17162	1388	14457	14880	17162	17162	494	
SDLEQLDHEVK	11	Unmodified	_SDLEQLDHEVK_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.822606	1311.63066	1.4376	0.00094426	2.616	0.0017182	4.0536	0.0026625	656.82463979595	6.2678	0.088727	6.2678	6.2323	6.321	0	468	22	1.01159370163332	0.0141063059336848	1.01159370163332	409.438282417893	0	5.70946780651536						124	11	3	NaN	NaN	NaN	0.0054062	1	12705	57.888	24.462	1	25186			17163	3311	14458	14881	17163	17163		
SDLLELDCQLTR	12	Unmodified	_SDLLELDCQLTR_			0	0	0	Q7L5L3	Q7L5L3	Q7L5L3	GDPD3	Glycerophosphodiester phosphodiesterase domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.863948	1461.71334	1.4886	0.0010895	2.9473	0.002157	4.4359	0.0032465	732.369697850314	13.584	0.23944	13.584	13.407	13.646	0	438	31	1.03173026378327	0.0201226639147589	1.03173026378327	417.141226163853	0	8.13584033902964						285	28	4	NaN	NaN	NaN	0.021001	1	17320	33.723	22.368	1	68616			17164	2119	14459	14882	17164	17164		
SDLVNWFK	8	Unmodified	_SDLVNWFK_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.761092	1007.50763	-1.1142	-0.00056239	-1.1283	-0.00056952	-2.2425	-0.0011319	504.760611604253	14.001	0.17733	14.001	13.939	14.116	0	723	37	0.839303037468863	0.024467056718703	0.839303037468863	340.771089199705	0	9.93403478282147						284	21	3	NaN	NaN	NaN	0.011146	1	4457	53.679	17.11	1	73439			17165	240	14460	14883	17165	17165		
SDMETHMAAEHCQVTCK	17	Unmodified	_SDMETHMAAEHCQVTCK_			0	0	0	O14545	O14545	O14545	TRAFD1	TRAF-type zinc finger domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.942727	2033.80635	2.4523	0.001665	-0.85185	-0.00057836	1.6004	0.0010866	679.275977551548	3.8115	0.044344	3.8115	3.7849	3.8292	0	603	16	0.920633820089869	0.0101374666021949	0.920633820089869	556.858344239213	0	6.13178958201593						79	6	4	NaN	NaN	NaN	0.040239	1	32216	29.98	28.885	1	13531			17166	102	14461	14884	17166	17166		
SDMMEENIDTSAQAVAETK	19	Unmodified	_SDMMEENIDTSAQAVAETK_			0	0	0	P82970	P82970	P82970	HMGN5	High mobility group nucleosome-binding domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.45373	2068.8929	2.0731	0.0021466	0.090538	9.3748E-05	2.1636	0.0022403	1035.95558811357	10.933	0.070943	10.933	10.897	10.968	0	180	31	1.203763835057	0.0198885785601712	1.203763835057	485.354824657453	0	8.01902937987893						123	9	3	NaN	NaN	NaN	7.9328E-07	1	32853	67.927	62.229	1	17705			17167	1479	14462	14885	17167	17167		
SDMMSHLVK	9	Unmodified	_SDMMSHLVK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.25172	1046.48889	1.4768	0.00077424	-2.0258	-0.001062	-0.54891	-0.00028777	524.250678514915	6.0283	0.15075	6.0283	5.9751	6.1259	0	657	37	0.884090832094921	0.0243958062014034	0.884090832094921	358.775482128604	0	9.90013335064731						434	18	4	NaN	NaN	NaN	0.056729	1	5388	40.502	32.499	1	226520			17168	951	14463	14886	17168	17168		
SDMNTVLNYIFSHAQVTK	18	Unmodified	_SDMNTVLNYIFSHAQVTK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.010452	2067.00953	-0.60072	-0.0004145	0.35747	0.00024666	-0.24325	-0.00016784	690.345184545186	19.082	0.070955	19.082	19.046	19.117	0	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	559.250025955651	0	11.034491652914						186	9	4	NaN	NaN	NaN	8.0251E-05	1	32833	46.206	44.496	1	46767			17169	1625	14464	14887	17169	17169		
SDPEGENIHAGLLK	14	Unmodified	_SDPEGENIHAGLLK_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.375537	1478.73652	1.8712	0.0013854	-1.1026	-0.00081635	0.76862	0.00056906	740.375596364478	6.5338	0.15962	6.5338	6.4806	6.6402	0	432	55	1.035754240522	0.0362258060074347	1.035754240522	418.722979089073	0	14.6449580584785						319	19	3	NaN	NaN	NaN	0.0060369	1	17860	61.042	48.446	1	148080			17170	2069	14465	14888	17170	17170		
SDPFLEFFR	9	Unmodified	_SDPFLEFFR_			0	0	0	Q99829	Q99829	Q99829	CPNE1	Copine-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.284931	1156.55531	-0.44112	-0.00025553	-0.72274	-0.00041867	-1.1639	-0.00067421	579.284358292617	17.885	0.23052	17.885	17.796	18.027	0	639	46	0.896281965493857	0.0304714989453929	0.896281965493857	363.272925321734	0	12.3504332196751						737	27	4	NaN	NaN	NaN	0.00055096	1	8240	110.22	104.47	1	376290			17171	2678	14466	14889	17171	17171		
SDPGLLTNTMDVFVK	15	Unmodified	_SDPGLLTNTMDVFVK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.916181	1635.81781	0.86751	0.00071042	2.1336	0.0017473	3.0012	0.0024577	818.918141107482	16.856	0.19511	16.856	16.794	16.989	0	303	55	1.12200181823275	0.0360017689758143	1.12200181823275	453.186117029422	0	14.5414219684937						875	23	5	NaN	NaN	NaN	8.1269E-12	1	22668	183	167.38	1	376180			17172	1465	14467	14890	17172	17172		
SDPMVQCIIEESGEHIIAGAGELHLEICLK	30	Unmodified	_SDPMVQCIIEESGEHIIAGAGELHLEICLK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	837.912272	3347.61998	1.0712	0.00089754	0.28168	0.00023602	1.3528	0.0011336	838.413747977753	19.942	0.079832	19.942	19.915	19.995	0	399	40	1.0578662689527	0.0261071745349262	1.0578662689527	850.880426285751	0	20.9989527498469						201	10	7	NaN	NaN	NaN	0.00038545	1	38577	19.085	19.012	1	49974			17173	679	14468	14891	17173	17173		
SDPNQHLTIIQDPEYR	16	Unmodified	_SDPNQHLTIIQDPEYR_			0	0	0	P35573	P35573	P35573	AGL	Glycogen debranching enzyme;4-alpha-glucanotransferase;Amylo-alpha-1,6-glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.649911	1924.9279	0.38144	0.00024513	1.1611	0.00074617	1.5425	0.0009913	642.650839955065	8.8133	0.12406	8.8133	8.769	8.8931	0	657	31	0.884090832094921	0.0203270164952024	0.884090832094921	534.959612656638	0	12.2997914648333						272	15	4	NaN	NaN	NaN	0.0026817	1	30173	49.487	38.515	1	56572			17174	971	14469	14892	17174	17174		
SDPPTLLTPSK	11	Unmodified	_SDPPTLLTPSK_			0	0	0	O94804	O94804	O94804	STK10	Serine/threonine-protein kinase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.316428	1154.6183	0.1344	7.7724E-05	8.734	0.005051	8.8684	0.0051288	578.321435325889	17.583	0.16846	17.583	17.53	17.699	0	570	40	0.942920803299286	0.0263209282177764	0.942920803299286	382.183670797615	0	10.6683710125732						473	20	4	NaN	NaN	NaN	0.045972	1	8198	49.96	35.425	1	229100			17175	386	14470	14893	17175	17175		
SDPTSYAGYIEDLK	14	Unmodified	_SDPTSYAGYIEDLK_			0	0	0	P54709	P54709	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.867211	1557.71987	2.0398	0.0015908	0.34721	0.00027078	2.387	0.0018615	779.867373391004	13.522	0.17735	13.522	13.442	13.62	0	393	94	1.0618830335572	0.0623329805423609	1.0618830335572	429.084166529383	0	25.187420985261						809	21	2	NaN	NaN	NaN	9.1316E-06	1	20283	110.44	105.61	1	280660			17176	1254	14471	14894	17176	17176		
SDQDHSMDEMTAVVK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDQDHSMDEMTAVVK_			1	0	0	P08047	P08047	P08047	SP1	Transcription factor Sp1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.869102	1733.72365	2.9963	0.0026004	-0.88351	-0.00076678	2.1128	0.0018336	867.868473486109	9.842	0.11526	9.842	9.8066	9.9218	0	321	31	1.10999792833052	0.0200147497946634	1.10999792833052	448.1249711334	0	8.08029361592196						284	14	4	NaN	NaN	NaN	2.4502E-07	1	25425	102.26	92.997	1	68864			17177	572	14472	14895	17177	17177		
SDQDYILK	8	Unmodified	_SDQDYILK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.248015	980.481476	0.6583	0.00032339	1.3445	0.00066049	2.0028	0.00098388	491.248447084161	6.3387	0.47885	6.3387	6.1347	6.6136	0	690	79	0.86171403876517	0.0529678138088558	0.86171403876517	350.000220281937	0	21.5138034974086						956	55	4	NaN	NaN	NaN	0.0014726	1	3853	99.305	57.076	1	513360			17178	3319	14473	14896	17178	17178		
SDQLQQAVQSQGFINYCQK	19	Unmodified	_SDQLQQAVQSQGFINYCQK_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.53149	2241.04843	0.74827	0.00083921	0.14926	0.00016739	0.89753	0.0010066	1122.03326748021	11.89	0.07096	11.89	11.855	11.926	0	120	34	1.2434810169581	0.0218219896940597	1.2434810169581	501.111846547828	0	8.79406874878435						163	9	4	NaN	NaN	NaN	4.1585E-07	1	35106	104	102.9	1	24443			17179	400	14474	14897	17179	17179		
SDQNLQTALELTR	13	Unmodified	_SDQNLQTALELTR_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.886269	1487.75799	1.6114	0.0012003	0.45618	0.00033981	2.0676	0.0015401	744.886717804842	11.465	0.26609	11.465	11.367	11.633	0	441	94	1.02971785871157	0.0623674054350156	1.02971785871157	416.259250066567	0	25.211769607901						1379	31	4	NaN	NaN	NaN	3.3593E-11	1	18175	186.27	158.17	1	698120			17180	429	14475	14898	17180	17180		
SDQQGEALDSSQK	13	Unmodified	_SDQQGEALDSSQK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.81551	1391.61647	2.4467	0.0017049	-1.3957	-0.00097254	1.051	0.00073233	696.814233569171	2.3926	0.088657	2.3926	2.3661	2.4547	0	561	13	0.948993180460448	0.00809482152890306	0.948993180460448	383.870785894148	0	3.27438127686565						69	11	2	NaN	NaN	NaN	3.8324E-05	1	15185	112.7	91.615	1	11943			17181	1927	14476	14899	17181	17181		
SDQQLDCALDLMR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDQQLDCALDLMR_			1	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.863622	1605.71269	1.9136	0.0015383	-0.74724	-0.00060068	1.1664	0.00093762	803.863247912356	17.681	0.133	17.681	17.637	17.77	0	360	76	1.08395544855938	0.0501369565243259	1.08395544855938	437.887801017785	0	20.2539335646492						900	16	4	NaN	NaN	NaN	6.2244E-17	1	21767	197.3	172.48	1	415080			17182	1100	14477	14900	17182	17182		
SDSEDICLFTK	11	Unmodified	_SDSEDICLFTK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.797743	1313.58093	1.3515	0.00088904	1.0187	0.00067007	2.3702	0.0015591	657.798064997083	10.525	0.1951	10.525	10.445	10.64	0	540	40	0.963152256458504	0.0262845144362098	0.963152256458504	389.825785188473	0	10.6383818442881						495	23	5	NaN	NaN	NaN	1.1052E-11	1	12752	191.25	123.37	1	175470			17183	378	14478	14901	17183	17183		
SDSFENPVLQQHFR	14	Unmodified	_SDSFENPVLQQHFR_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	568.609387	1702.80633	0.2083	0.00011844	-0.67091	-0.00038148	-0.4626	-0.00026304	568.609011043912	9.9218	0.22167	9.9218	9.8332	10.055	0	726	73	0.837263974740672	0.0489341389555591	0.837263974740672	507.097074685487	0	29.6374374931192						1304	26	5	NaN	NaN	NaN	4.2314E-17	1	24578	211.84	187.15	1	712500			17184	673	14479	14902	17184	17184		
SDSFENPVLQQHFR	14	Unmodified	_SDSFENPVLQQHFR_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.410443	1702.80633	2.6623	0.0022693	-2.05	-0.0017474	0.61225	0.00052189	852.409464535808	9.9218	0.18618	9.9218	9.8509	10.037	0	330	82	1.10399226369747	0.0540584718089041	1.10399226369747	445.764571769351	0	21.8274641306772						1180	22	5	NaN	NaN	NaN	6.8215E-08	1	24579	119.94	108.96	1	316240			17185	673	14479	14902	17185	17185		
SDSHPSDALTR	11	Unmodified	_SDSHPSDALTR_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.278366	1184.54218	1.7866	0.00106	-1.905	-0.0011302	-0.11834	-7.0209E-05	593.277258726463	2.4547	0.2217	2.4547	2.4281	2.6498	0	642	25	0.894250814548268	0.0162503358179286	0.894250814548268	362.348754416395	0	6.58460562370198						183	26	2	NaN	NaN	NaN	0.042586	1	8986	33.723	26.077	1	37799			17186	1145	14480	14903	17186	17186		
SDSYVELSQYR	11	Unmodified	_SDSYVELSQYR_			0	0	0	P52298	P52298	P52298	NCBP2	Nuclear cap-binding protein subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.814781	1345.61501	1.4785	0.00099623	2.7513	0.0018539	4.2298	0.0028501	673.816019772885	8.6891	0.19529	8.6891	8.6446	8.8399	0	528	46	0.971237000454584	0.0303031202144891	0.971237000454584	393.000571276222	0	12.2618305832379						451	23	4	NaN	NaN	NaN	2.9061E-05	1	13767	92.732	86.041	1	154870			17187	1209	14481	14904	17187	17187		
SDTFINLR	8	Unmodified	_SDTFINLR_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.256174	964.497795	-0.60266	-0.00029124	-0.83405	-0.00040306	-1.4367	-0.0006943	483.256222418472	9.5672	0.15073	9.5672	9.4962	9.647	0	723	37	0.839303037468863	0.0244738587568686	0.839303037468863	340.975744519546	0	9.94276422024626						205	18	2	NaN	NaN	NaN	0.011146	1	3530	53.679	36.284	1	69020			17188	739	14482	14905	17188	17188		
SDTSESGAGLTR	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDTSESGAGLTR_			1	0	0	Q9UNF1	Q9UNF1	Q9UNF1	MAGED2	Melanoma-associated antigen D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.780938	1221.54732	1.839	0.0011251	2.1265	0.001301	3.9656	0.0024261	611.782131530338	4.8046	0.14189	4.8046	4.7514	4.8933	0	543	31	0.961130371139249	0.0202202547375568	0.961130371139249	389.312352842212	0	8.19035084451269						196	17	2	NaN	NaN	NaN	0.0050488	1	10052	40.533	36.64	1	47811			17189	3295	14483	14906	17189	17189		
SDTSFMFQR	9	Unmodified	_SDTSFMFQR_			0	0	0	P09525	P09525	P09525	ANXA4	Annexin A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.750398	1117.48624	0.56298	0.00031513	-0.050887	-2.8484E-05	0.51209	0.00028664	559.75041330303	9.1681	0.11528	9.1681	9.1238	9.2391	0	657	34	0.884090832094921	0.0223581674407913	0.884090832094921	358.479307159457	0	9.06574311435628						338	14	4	NaN	NaN	NaN	0.0045833	1	7189	75.243	59.662	1	130240			17190	604	14484	14907	17190	17190		
SDTWSSIQAHK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SDTWSSIQAHK_			1	0	0	Q86U44	Q86U44	Q86U44	METTL3	N6-adenosine-methyltransferase 70 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.309666	1300.60478	1.5248	0.00099312	2.2048	0.001436	3.7296	0.0024291	651.31130926475	7.8818	0.11526	7.8818	7.8374	7.9527	0	501	25	0.98941132619024	0.016144906020601	0.98941132619024	400.495447042528	0	6.53516003205419						191	14	3	NaN	NaN	NaN	0.001868	1	12361	67.507	60.357	1	47068			17191	2162	14485	14908	17191	17191		
SDVEAIFSK	9	Unmodified	_SDVEAIFSK_			0	0	0	P07910;O60812;B7ZW38;B2RXH8;P0DMR1	P07910	P07910	HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.25584	994.497126	-0.86747	-0.00043222	-0.11271	-5.6158E-05	-0.98018	-0.00048838	498.255788631825	9.31	0.2749	9.31	9.2391	9.514	0	732	40	0.833184998970724	0.0265188764600823	0.833184998970724	338.346678441349	0	10.7690054157835						692	32	4	NaN	NaN	NaN	0.01672	1	4151	58.916	48.837	1	269920			17192	568	14486	14909	17192	17192		
SDVEDHSVHLLFSANR	16	Unmodified	_SDVEDHSVHLLFSANR_			0	0	0	P23919	P23919	P23919	DTYMK	Thymidylate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.299101	1824.87547	-0.73684	-0.00044896	0.88577	0.0005397	0.14893	9.0743E-05	609.299467927774	9.381	0.15956	9.381	9.3455	9.5051	0	699	34	0.85560534332665	0.0223985529654932	0.85560534332665	517.926056409576	0	13.5585808307301						287	19	4	NaN	NaN	NaN	1.7302E-05	1	27849	95.656	85.406	1	73165			17193	827	14487	14910	17193	17193		
SDVLQPGAEVTTDDR	15	Unmodified	_SDVLQPGAEVTTDDR_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.883923	1601.75329	2.5493	0.0020443	-2.0874	-0.0016739	0.46186	0.00037036	801.882734141238	7.3319	0.2394	7.3319	7.261	7.5003	8.8818E-16	405	52	1.05384839605172	0.0341589991885669	1.05384839605172	425.734395347356	0	13.7995758400353						658	28	4	NaN	NaN	NaN	0.00012018	1	21627	99.589	76.536	1	179090			17194	1247	14488	14911	17194	17194		
SDVLVEYQGEGR	12	Unmodified	_SDVLVEYQGEGR_			0	0	0	P15586	P15586	P15586	GNS	N-acetylglucosamine-6-sulfatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.328056	1350.64156	1.8069	0.0012221	-0.68632	-0.00046418	1.1206	0.00075789	676.328543980889	7.4205	0.30147	7.4205	7.2964	7.5979	0	528	37	0.971237000454584	0.0242475250130607	0.971237000454584	392.985714916647	0	9.81112843493088						443	35	3	NaN	NaN	NaN	0.029228	1	13901	51.531	34.879	1	170320			17195	716	14489	14912	17195	17195		
SDWQLIVELK	10	Unmodified	_SDWQLIVELK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.840071	1229.66559	0.44408	0.00027349	-0.55468	-0.00034159	-0.11059	-6.8106E-05	615.839981176095	15.757	0.1419	15.757	15.704	15.845	0	561	37	0.948993180460448	0.0242911943445451	0.948993180460448	384.367757626324	0	9.83858692825152						201	17	2	NaN	NaN	NaN	0.045356	1	10301	50.297	33.645	1	51506			17196	288	14490	14913	17196	17196		
SDYDMVDYLNELR	13	Unmodified	_SDYDMVDYLNELR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.864145	1631.71374	0.74905	0.00061187	0.19993	0.00016331	0.94898	0.00077518	816.864386320047	16.892	0.21286	16.892	16.83	17.043	0	396	46	1.05987478976334	0.0301236649306122	1.05987478976334	428.101528678766	0	12.1674627331041						734	25	5	NaN	NaN	NaN	1.6889E-11	1	22533	176.45	173.35	1	493080			17197	1780	14491	14914	17197	17197		
SDYLNTFEFMDK	12	Unmodified	_SDYLNTFEFMDK_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.33195	1508.64935	1.2414	0.00093767	0.43823	0.00033101	1.6796	0.0012687	755.332127951723	15.287	0.15074	15.287	15.234	15.384	0	429	37	1.03776581230406	0.0241371995197355	1.03776581230406	419.459060331724	0	9.75611926076925						469	18	5	NaN	NaN	NaN	5.0376E-05	1	18743	108.4	103.25	1	223990			17198	367	14492	14915	17198	17198		
SEAALDQEQITAAYSVEHNQLEAHPK	26	Unmodified	_SEAALDQEQITAAYSVEHNQLEAHPK_			0	0	0	Q9Y520	Q9Y520	Q9Y520	PRRC2C	Protein PRRC2C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	720.600609	2878.37333	1.3068	0.00094167	1.2294	0.00088592	2.5362	0.0018276	720.851919554633	10.356	0.070915	10.356	10.321	10.392	0	534	19	0.967195187796614	0.0121271162843546	0.967195187796614	778.475068920195	0	9.7608608938317						157	9	5	NaN	NaN	NaN	0.0015882	1	38045	34.579	34.138	1	32074			17199	3422	14493	14916	17199	17199		
SEAHLTELLEEICDR	15	Unmodified	_SEAHLTELLEEICDR_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.624486	1813.85163	-1.22	-0.00073887	-1.3616	-0.0008246	-2.5816	-0.0015635	605.957976071166	15.26	0.1064	15.26	15.225	15.331	0	726	34	0.837263974740672	0.022429693259391	0.837263974740672	506.846639158478	0	13.578053026107						341	13	4	NaN	NaN	NaN	7.3917E-05	1	27568	78.043	70.467	1	120050			17200	3341	14494	14917	17200	17200		
SEALPTDLPAPSAPDLTEPK	20	Unmodified	_SEALPTDLPAPSAPDLTEPK_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.02296	2048.03137	1.885	0.0019322	-0.12122	-0.00012425	1.7638	0.0018079	1025.52485283166	13.256	0.20397	13.256	13.167	13.371	0	171	67	1.20972836110953	0.0437548926164015	1.20972836110953	487.792830385243	0	17.6430706253603						1155	24	5	NaN	NaN	NaN	1.0657E-10	1	32508	135.89	119.13	1	430160			17201	694	14495	14918	17201	17201		
SEAPETPMEEEAELVLTEK	19	Unmodified	_SEAPETPMEEEAELVLTEK_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.5012	2130.98785	0.44143	0.00047078	2.5937	0.0027662	3.0351	0.0032369	1067.00503875518	16.315	0.22167	16.315	16.2	16.422	0	141	64	1.2295923935727	0.0416944646743262	1.2295923935727	495.672510200578	0	16.8078463030689						602	26	3	NaN	NaN	NaN	0.043435	1	33753	33.456	31.868	1	123800			17202	1968	14496	14919	17202	17202		
SEASLHPVLMSEAPWNTR	18	Unmodified	_SEASLHPVLMSEAPWNTR_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.666796	2023.97856	0.27801	0.00018785	-0.79035	-0.00053402	-0.51234	-0.00034617	676.001313306417	12.493	0.13297	12.493	12.458	12.591	0	618	40	0.910492137470517	0.026386663985959	0.910492137470517	550.742116808973	0	15.9608705897526						413	16	4	NaN	NaN	NaN	1.7258E-05	1	32043	88.42	84.113	1	99641			17203	470	14497	14920	17203	17203		
SEAVVEYVFSGSR	13	Unmodified	_SEAVVEYVFSGSR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.351531	1428.68851	1.3401	0.00095862	-0.22294	-0.00015948	1.1171	0.00079914	715.351162090377	12.68	0.22169	12.68	12.6	12.822	0	516	55	0.979317271586824	0.0363360970921059	0.979317271586824	396.035828841183	0	14.6943148520281						387	26	3	NaN	NaN	NaN	0.00012575	1	16347	85.821	69.942	1	88960			17204	2108	14498	14921	17204	17204		
SECLNNIGDSSPLIR	15	Unmodified	_SECLNNIGDSSPLIR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.909418	1673.80428	2.4976	0.0020928	-1.0422	-0.00087324	1.4555	0.0012196	837.908775508627	10.729	0.2217	10.729	10.658	10.879	0	387	40	1.06589869032374	0.0260999743301487	1.06589869032374	430.443533686679	0	10.5399934175626						659	26	5	NaN	NaN	NaN	3.1718E-18	1	23734	226.85	199.26	1	328560			17205	2448	14499	14922	17205	17205		
SEDDESGAGELTR	13	Unmodified	_SEDDESGAGELTR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.291867	1364.56918	3.0313	0.0020712	-1.628	-0.0011124	1.4033	0.00095888	683.29083777452	3.9002	0.33697	3.9002	3.8647	4.2017	0	567	46	0.944945209309785	0.0303576898931419	0.944945209309785	382.307897409967	0	12.2821772933779						605	39	4	NaN	NaN	NaN	2.5627E-07	1	14315	115.04	101.04	1	205970			17206	952	14500	14923	17206	17206		
SEDFGVNEDLADSDAR	16	Unmodified	_SEDFGVNEDLADSDAR_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.371377	1738.7282	2.7814	0.0024208	0.37169	0.00032351	3.1531	0.0027443	870.372054986586	9.576	0.33687	9.576	9.4874	9.8243	0	318	79	1.11199926528787	0.0520598876127911	1.11199926528787	448.922690501925	0	21.0169786472943						1592	39	6	NaN	NaN	NaN	2.2554E-24	1	25555	209.7	206.61	1	1246600			17207	506	14501	14924	17207	17207		
SEDFSLPAYMDR	12	Unmodified	_SEDFSLPAYMDR_			0	0	0	P13073	P13073	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.816467	1429.61838	2.3752	0.0017002	-1.5367	-0.0011	0.8385	0.00060021	715.815555059321	12.848	0.26603	12.848	12.751	13.017	0	498	58	0.991429299781895	0.0383415147321906	0.991429299781895	400.931436639505	0	15.5052090833847						1232	31	5	NaN	NaN	NaN	8.2163E-08	1	16366	148.9	131.43	1	696970			17208	675	14502	14925	17208	17208		
SEDFSLPAYMDR	12	Oxidation (M)	_SEDFSLPAYM(Oxidation (M))DR_	SEDFSLPAYM(1)DR	SEDFSLPAYM(86)DR	0	1	0	P13073	P13073	P13073	COX4I1	Cytochrome c oxidase subunit 4 isoform 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.813924	1445.61329	1.55	0.0011219	1.1855	0.0008581	2.7356	0.00198	723.814678731227	10.534	0.16851	10.534	10.463	10.631	0	483	34	1.00151498427745	0.0221823754430851	1.00151498427745	404.967106801044	0	8.96954368749823						334	20	4	NaN	NaN	NaN	0.0049476	1	16838	85.622	80.126	1	74427			17209	675	14502	14926	17209	17209	206	
SEDGEIVSTPR	11	Unmodified	_SEDGEIVSTPR_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.288399	1188.56225	1.8853	0.0011223	0.050352	2.9974E-05	1.9357	0.0011523	595.28816849774	4.8578	0.23053	4.8578	4.7337	4.9642	0	567	76	0.944945209309785	0.0506592831368379	0.944945209309785	382.875109758116	0	20.5262468132431						362	27	2	NaN	NaN	NaN	1.6941E-05	1	9114	121.8	85.556	1	98999			17210	1593	14503	14927	17210	17210		
SEDGVEGDLGETQSR	15	Unmodified	_SEDGVEGDLGETQSR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.847538	1577.68052	2.2536	0.00178	-0.9351	-0.00073859	1.3185	0.0010414	789.846634408902	5.5228	0.17741	5.5228	5.4697	5.6471	0	477	37	1.0055473068722	0.0241939396115666	1.0055473068722	406.274816999197	0	9.77516256172339						438	21	4	NaN	NaN	NaN	4.9462E-24	1	20892	196.38	180.5	1	162360			17211	1584	14504	14928	17211	17211		
SEDPDQQYLILNTAR	15	Unmodified	_SEDPDQQYLILNTAR_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.933948	1761.85334	2.8539	0.002517	-1.3169	-0.0011614	1.537	0.0013555	882.435232190761	11.527	0.26607	11.527	11.447	11.713	0	336	76	1.09998710857178	0.0500541343932148	1.09998710857178	444.027189321418	0	20.2051428015307						1085	31	5	NaN	NaN	NaN	3.18E-33	1	26192	253.14	242.89	1	539070			17212	2605	14505	14929	17212	17212		
SEDPDTSMDSYAK	13	Unmodified	_SEDPDTSMDSYAK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.290479	1444.5664	1.4226	0.0010289	-0.057177	-4.1355E-05	1.3654	0.00098759	723.290407821965	5.3987	0.10643	5.3987	5.3632	5.4697	0	489	25	0.997481546940468	0.0161359806819593	0.997481546940468	403.338943591137	0	6.52470155666646						197	13	3	NaN	NaN	NaN	0.00017256	1	16802	69.276	62.125	1	54944			17213	1163	14506	14930	17213	17213		
SEDPPGQEAGSEEEGSSASGLAK	23	Unmodified	_SEDPPGQEAGSEEEGSSASGLAK_			0	0	0	O75153	O75153	O75153	CLUH	Clustered mitochondria protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1109.98275	2217.95094	3.3788	0.0037505	-2.1974	-0.0024391	1.1814	0.0013114	1109.97969870081	5.0529	0.12412	5.0529	5.0263	5.1504	0	252	49	1.15595906938629	0.0319004977847992	1.15595906938629	465.871174370583	0	12.8564434153371						221	15	3	NaN	NaN	NaN	0.0003595	1	34868	55.416	54.146	1	37525			17214	307	14507	14931	17214	17214		
SEDTTGPITGLALTSVNK	18	Unmodified	_SEDTTGPITGLALTSVNK_			0	0	0	Q92538	Q92538	Q92538	GBF1	Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.470363	1802.92617	2.1152	0.0019089	-0.81901	-0.00073913	1.2962	0.0011698	902.970722910914	12.742	0.15964	12.742	12.653	12.813	0	288	31	1.13199748998575	0.0199844694124975	1.13199748998575	456.867396474248	0	8.06561197456534						266	19	3	NaN	NaN	NaN	5.1849E-07	1	27295	107.6	98.849	1	54219			17215	2408	14508	14932	17215	17215		
SEDYVDIVQGR	11	Unmodified	_SEDYVDIVQGR_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.809499	1279.60444	0.96499	0.00061837	-1.4111	-0.00090425	-0.44611	-0.00028587	640.808704910392	9.5406	0.133	9.5406	9.4962	9.6292	0	552	34	0.955063035883597	0.0222530586923161	0.955063035883597	386.658582335977	0	9.00918138733084						305	16	5	NaN	NaN	NaN	1.4133E-05	1	11739	134.66	121.83	1	118640			17216	1531	14509	14933	17216	17216		
SEEAHAEDSVMDHHFR	16	Unmodified	_SEEAHAEDSVMDHHFR_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	474.953695	1895.78567	0.013832	6.5697E-06	0.83942	0.00039868	0.85325	0.00040525	474.954151222056	4.7691	0.36354	4.7691	4.7248	5.0883	0	831	58	0.76571780291124	0.0389205065550885	0.76571780291124	617.842306070914	0	31.4041745301192						1010	42	6	NaN	NaN	NaN	1.3461E-12	1	29507	198.33	157.47	1	1132700			17217	2296	14510	14934	17217	17217		
SEEAHAEDSVMDHHFR	16	Unmodified	_SEEAHAEDSVMDHHFR_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.900113	1895.78567	3.2241	0.0030593	-1.5799	-0.0014991	1.6442	0.0015602	948.898627275297	4.7691	0.079796	4.7691	4.7425	4.8223	0	255	64	1.15396378101328	0.0419241293629249	1.15396378101328	465.558690265407	0	16.91399944943						407	10	4	NaN	NaN	NaN	0.00033668	1	29508	45.183	44.22	1	106230			17218	2296	14510	14934	17218	17218		
SEEAHAEDSVMDHHFR	16	Unmodified	_SEEAHAEDSVMDHHFR_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.935834	1895.78567	1.8384	0.0011636	1.5578	0.00098598	3.3962	0.0021495	632.936811085759	4.7691	0.11528	4.7691	4.7248	4.8401	0	630	133	0.902373728295776	0.0894763143811742	0.902373728295776	546.082521205164	0	54.1476882729036						738	14	6	NaN	NaN	NaN	3.2545E-44	1	29509	264.98	231.23	1	561640			17219	2296	14510	14934	17219	17219		
SEEAHAEDSVMDHHFR	16	Oxidation (M)	_SEEAHAEDSVM(Oxidation (M))DHHFR_	SEEAHAEDSVM(1)DHHFR	SEEAHAEDSVM(60)DHHFR	0	1	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	478.952423	1911.78059	-0.28872	-0.00013828	2.3298	0.0011159	2.0411	0.00097757	479.204850083059	3.4301	0.1331	3.4301	3.3858	3.5189	0	828	25	0.767766820543916	0.016391000507895	0.767766820543916	619.458031315437	0	13.2247664710462						258	16	4	NaN	NaN	NaN	0.025059	1	29858	59.731	56.443	1	90743			17220	2296	14510	14935	17220	17220	594	
SEEAHAEDSVMDHHFR	16	Oxidation (M)	_SEEAHAEDSVM(Oxidation (M))DHHFR_	SEEAHAEDSVM(1)DHHFR	SEEAHAEDSVM(53)DHHFR	0	1	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.267473	1911.78059	1.6041	0.0010238	0.72247	0.00046113	2.3266	0.001485	638.267927259612	3.4213	0.10652	3.4213	3.3858	3.4923	0	639	37	0.896281965493857	0.0243721251806781	0.896281965493857	542.363082747462	0	14.74819471439						313	13	4	NaN	NaN	NaN	0.00019068	1	29859	52.863	52.244	1	97929			17221	2296	14510	14935	17221	17221	594	
SEEEFIHINNK	11	Unmodified	_SEEEFIHINNK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.889491	1358.64664	-1.2612	-0.00057244	0.99079	0.00044971	-0.2704	-0.00012273	453.889823828273	6.658	0.2394	6.658	6.6047	6.8441	0	780	31	0.800512323802183	0.0204460030373547	0.800512323802183	485.82701013019	0	12.4085791428807						371	28	4	NaN	NaN	NaN	0.029316	1	14146	36.211	27.737	1	116100			17222	1801	14511	14936	17222	17222		
SEEEFIHINNK	11	Unmodified	_SEEEFIHINNK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.330598	1358.64664	1.9229	0.0013082	0.46691	0.00031766	2.3898	0.0016259	680.331139842655	6.658	0.16848	6.658	6.5693	6.7377	0	489	58	0.997481546940468	0.0383362142097218	0.997481546940468	403.58079157976	0	15.5108229564613						698	20	5	NaN	NaN	NaN	2.2885E-19	1	14148	213.45	190.4	1	428320			17223	1801	14511	14936	17223	17223		
SEEEIDFLR	9	Unmodified	_SEEEIDFLR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.274761	1136.53497	0.67899	0.00038653	4.5089	0.0025668	5.1879	0.0029533	569.778637633717	11.252	0.21286	11.252	11.208	11.42	0	633	25	0.900343422309015	0.0162458284325523	0.900343422309015	364.994792605518	0	6.58597889707147						247	25	4	NaN	NaN	NaN	0.02675	1	7702	58.426	34.851	1	101420			17224	3329	14512	14937	17224	17224		
SEEGPGWTILR	11	Unmodified	_SEEGPGWTILR_			0	0	0	Q9Y3B9	Q9Y3B9	Q9Y3B9	RRP15	RRP15-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.817127	1243.6197	0.58445	0.00036401	-0.98509	-0.00061353	-0.40064	-0.00024953	622.816812493301	11.766	0.17735	11.766	11.695	11.873	0	564	40	0.946969335010767	0.0263136394103891	0.946969335010767	383.500269424501	0	10.6564039935978						304	21	3	NaN	NaN	NaN	0.0068348	1	10732	72.365	65.215	1	94747			17225	3382	14513	14938	17225	17225		
SEEIITPVYCTGVSAQVQK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SEEIITPVYCTGVSAQVQK_			1	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.03554	2150.05654	0.77968	0.00083896	-1.0915	-0.0011745	-0.31181	-0.00033552	1076.53580813444	14.604	0.097542	14.604	14.551	14.648	0	93	46	1.26131825079847	0.0297043028427506	1.26131825079847	508.432627847225	0	11.9736923993203						232	12	3	NaN	NaN	NaN	4.3345E-07	1	34019	77.696	76.885	1	37507			17226	559	14514	14939	17226	17226		
SEEITTGSAWFSFLESHNK	19	Unmodified	_SEEITTGSAWFSFLESHNK_			0	0	0	Q15121	Q15121	Q15121	PEA15	Astrocytic phosphoprotein PEA-15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.007764	2169.00146	0.53653	0.00038845	-0.40772	-0.00029519	0.12882	9.3265E-05	724.341880991896	16.191	0.10644	16.191	16.147	16.253	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	584.774578133688	0	12.2202666392914						250	13	4	NaN	NaN	NaN	0.0005271	1	34291	66.485	64.384	1	57437			17227	1813	14515	14940	17227	17227		
SEEMQTVQQEQLLQETQALQQSFLSEK	27	Unmodified	_SEEMQTVQQEQLLQETQALQQSFLSEK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1060.85036	3179.52924	0.74087	0.00078595	-2.1878	-0.0023209	-1.4469	-0.0015349	1061.18226474163	18.727	0.04432	18.727	18.71	18.754	0	357	34	1.08596037261705	0.0220541677756794	1.08596037261705	655.252402677808	0	13.3071581509441						128	6	4	NaN	NaN	NaN	2.5728E-06	1	38440	66.582	66.495	1	19199			17228	1816	14516	14941	17228	17228		
SEENEEPMETDQNAK	15	Unmodified	_SEENEEPMETDQNAK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.857245	1749.69994	3.3413	0.0029265	-2.6778	-0.0023454	0.66349	0.00058112	875.855126166524	3.3681	0.25723	3.3681	3.3326	3.5898	0	435	76	1.03374239103424	0.0503240595692491	1.03374239103424	417.309096085577	0	20.3152042446371						914	30	5	NaN	NaN	NaN	3.0528E-17	1	25866	172.92	172.24	1	242740			17229	955	14517	14942	17229	17229		
SEENEEPMETDQNAK	15	Oxidation (M)	_SEENEEPM(Oxidation (M))ETDQNAK_	SEENEEPM(1)ETDQNAK	SEENEEPM(73)ETDQNAK	0	1	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.854703	1765.69485	3.5292	0.0031193	-0.78089	-0.00069019	2.7483	0.0024291	883.853407092443	2.3572	0.035452	2.3572	2.3395	2.3749	0	432	16	1.035754240522	0.010059247726361	1.035754240522	418.091472411424	0	4.06050540632685						33	5	2	NaN	NaN	NaN	6.187E-05	1	26282	72.846	70.71	1	5143.4			17230	955	14517	14943	17230	17230	341	
SEEPAGQILSHLSSELK	17	Unmodified	_SEEPAGQILSHLSSELK_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.982779	1823.92651	-1.2442	-0.00075772	0.34242	0.00020853	-0.90182	-0.00054919	608.983113799314	14.817	0.17737	14.817	14.746	14.923	0	690	43	0.86171403876517	0.0285013139595033	0.86171403876517	521.625897665712	0	17.2528504932826						715	21	5	NaN	NaN	NaN	5.5309E-05	1	27831	77.696	76.958	1	266290			17231	3318	14518	14944	17231	17231		
SEEPAGQILSHLSSELK	17	Unmodified	_SEEPAGQILSHLSSELK_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.97053	1823.92651	0.73233	0.0006686	0.71122	0.00064932	1.4436	0.0013179	912.970940969042	14.808	0.1685	14.808	14.755	14.923	-1.7764E-15	189	37	1.1977968526266	0.0238761260820608	1.1977968526266	483.38113047869	0	9.63541421209271						368	20	3	NaN	NaN	NaN	1.2548E-06	1	27832	93.026	82.054	1	172100			17232	3318	14518	14944	17232	17232		
SEEPEVPDQEGLQR	14	Unmodified	_SEEPEVPDQEGLQR_			0	0	0	Q9H2V7	Q9H2V7	Q9H2V7	SPNS1	Protein spinster homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.876098	1611.73764	2.4682	0.0019915	-1.1317	-0.00091314	1.3365	0.0010784	806.87472665183	6.7821	0.23051	6.7821	6.6934	6.9239	0	435	40	1.03374239103424	0.0261576594975734	1.03374239103424	417.589775281335	0	10.5666278622365						434	27	4	NaN	NaN	NaN	0.0014472	1	21940	61.577	50.79	1	100150			17233	2875	14519	14945	17233	17233		
SEETNTEIVECILK	14	Unmodified	_SEETNTEIVECILK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.90601	1663.79747	2.4095	0.0020069	0.59205	0.00049312	3.0016	0.0025	833.408562214496	13.921	0.15961	13.921	13.859	14.019	0	363	31	1.08195024817156	0.0200533881003893	1.08195024817156	436.947229732454	0	8.09859084742823						305	19	5	NaN	NaN	NaN	2.7769E-08	1	23449	147.02	118.69	1	61299			17234	1074	14520	14946	17234	17234		
SEEWADNHLPLTDAELAR	18	Unmodified	_SEEWADNHLPLTDAELAR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.664109	2065.9705	0.37733	0.00026023	-0.28944	-0.00019962	0.087889	6.0614E-05	689.998217577744	12.334	0.18621	12.334	12.245	12.431	0	654	124	0.886123392477847	0.083208091719308	0.886123392477847	535.92769898925	0	50.3242793396068						1805	22	5	NaN	NaN	NaN	2.1587E-07	1	32807	127.62	113.85	1	636420			17235	272	14521	14947	17235	17235		
SEEWADNHLPLTDAELAR	18	Unmodified	_SEEWADNHLPLTDAELAR_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.99253	2065.9705	1.9539	0.0020203	-0.55784	-0.0005768	1.396	0.0014435	1034.49350083838	12.325	0.17735	12.325	12.245	12.423	0	189	91	1.1977968526266	0.059657603099011	1.1977968526266	482.953507488174	0	24.0540360427767						1237	21	4	NaN	NaN	NaN	0.0027545	1	32808	42.218	41.344	1	300220			17236	272	14521	14947	17236	17236		
SEFYHDEFK	9	Unmodified	_SEFYHDEFK_			0	0	0	Q9H2C0	Q9H2C0	Q9H2C0	GAN	Gigaxonin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.261653	1200.50875	0.36591	0.00022001	3.4999	0.0021044	3.8658	0.0023244	601.263828030194	5.8864	0.062066	5.8864	5.8598	5.9219	0	582	19	0.934820374997243	0.0121556930353043	0.934820374997243	378.729436564389	0	4.92470949226367						49	8	2	NaN	NaN	NaN	0.068436	1	9463	33.396	28.087	1	9628.9			17237	2864	14522	14948	17237	17237		
SEGALELADVSNELPGLK	18	Unmodified	_SEGALELADVSNELPGLK_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.478188	1840.94182	2.2509	0.0020742	0.090236	8.3151E-05	2.3412	0.0021573	921.478211168009	16.12	0.21281	16.12	15.996	16.209	0	288	76	1.13199748998575	0.0499302854607733	1.13199748998575	456.795372829372	0	20.1483868686121						1108	25	4	NaN	NaN	NaN	6.1944E-26	1	28258	167.01	131.17	1	594030			17238	1581	14523	14949	17238	17238		
SEGEGEAASADDGSLNTSGAGPK	23	Unmodified	_SEGEGEAASADDGSLNTSGAGPK_			0	0	0	Q9NWV8	Q9NWV8	Q9NWV8	BABAM1	BRISC and BRCA1-A complex member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1053.95653	2105.89851	3.6346	0.0038307	-4.2971	-0.0045289	-0.66251	-0.00069826	1054.45364125752	4.8755	0.070927	4.8755	4.8489	4.9199	0	201	85	1.18983705239708	0.0558028968847089	1.18983705239708	479.683385166106	0	22.496964963232						340	9	3	NaN	NaN	NaN	1.3436E-17	1	33395	111.03	100.27	1	69275			17239	3088	14524	14950	17239	17239		
SEGETIMSSSMGK	13	Unmodified	_SEGETIMSSSMGK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.29451	1342.57447	1.5952	0.0010724	1.263	0.00084914	2.8582	0.0019216	672.293823575221	6.2855	0.27491	6.2855	6.2323	6.5072	0	534	61	0.967195187796614	0.0404237385553284	0.967195187796614	391.374112232437	0	16.3574064364914						613	32	5	NaN	NaN	NaN	1.8023E-05	1	13679	108.4	77.808	1	193020			17240	1107	14526	14951	17240	17240		
SEGGEDYTGATVIEPLK	17	Unmodified	_SEGGEDYTGATVIEPLK_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.428164	1764.84177	2.9807	0.0026332	-0.98187	-0.00086741	1.9988	0.0017658	883.427585837228	10.711	0.12414	10.711	10.658	10.782	0	336	58	1.09998710857178	0.0380725831121829	1.09998710857178	444.021317570215	0	15.3683969430537						389	15	3	NaN	NaN	NaN	4.8115E-10	1	26260	130.65	127.98	1	102750			17241	878	14527	14952	17241	17241		
SEGGFIWACK	10	Unmodified	_SEGGFIWACK_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.768591	1153.52263	0.61363	0.00035454	0.35589	0.00020562	0.96952	0.00056016	577.769062524783	10.454	0.21284	10.454	10.392	10.605	0	645	88	0.892219381832517	0.0588626056563689	0.892219381832517	361.637513913726	0	23.8583994088229						693	25	4	NaN	NaN	NaN	0.0068156	1	8154	58.426	43.663	1	192590			17242	367	14528	14953	17242	17242		
SEGGLGGNWYAMDNSGEHVTWR	22	Unmodified	_SEGGLGGNWYAMDNSGEHVTWR_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.353829	2422.03966	1.7063	0.0013793	0.37959	0.00030684	2.0859	0.0016861	808.355529463744	12.511	0.079813	12.511	12.485	12.564	0	420	40	1.04379886199097	0.0261323987291064	1.04379886199097	630.670442162225	0	15.7893748128917						214	10	4	NaN	NaN	NaN	3.6322E-06	1	36450	65.421	62.515	1	42030			17243	657	14529	14954	17243	17243		
SEGTYLNSVIESHTEFIFTTIK	22	Unmodified	_SEGTYLNSVIESHTEFIFTTIK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	839.423355	2515.24824	0.58461	0.00049074	1.1309	0.00094928	1.7155	0.00144	839.75872955141	18.594	0.10641	18.594	18.55	18.656	0	522	34	0.975277694896658	0.0222161383936255	0.975277694896658	589.144931464699	0	13.4203062366864						269	13	4	NaN	NaN	NaN	6.7131E-05	1	36900	44.16	36.411	1	56798			17244	1036	14530	14955	17244	17244		
SEGVVAVLLTK	11	Unmodified	_SEGVVAVLLTK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.337164	1114.65977	0.67472	0.00037672	-1.0537	-0.00058834	-0.37902	-0.00021162	558.336652016132	13.176	0.25717	13.176	13.088	13.345	0	597	85	0.924688525662974	0.056781667722799	0.924688525662974	374.952363708087	0	23.0244238325398						1058	30	4	NaN	NaN	NaN	0.00029666	1	7134	94.804	84.102	1	490810			17245	1127	14531	14956	17245	17245		
SEHPGLSIGDTAK	13	Unmodified	_SEHPGLSIGDTAK_			0	0	0	P26583	P26583	P26583	HMGB2	High mobility group protein B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.889491	1310.64664	-1.7919	-0.00078464	0.77079	0.00033752	-1.0211	-0.00044712	437.889645490891	4.7071	0.079798	4.7071	4.6716	4.7514	0	831	46	0.76571780291124	0.030743838629966	0.76571780291124	464.881497807225	0	18.6651553565864						254	10	3	NaN	NaN	NaN	0.033332	1	12669	32.549	17.786	1	62798			17246	855	14532	14957	17246	17246		
SEHPGLSIGDTAK	13	Unmodified	_SEHPGLSIGDTAK_			0	0	0	P26583	P26583	P26583	HMGB2	High mobility group protein B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.330598	1310.64664	2.1352	0.0014014	0.52115	0.00034205	2.6564	0.0017435	656.330798225406	4.7071	0.23938	4.7071	4.6539	4.8933	0	516	43	0.979317271586824	0.028273132407321	0.979317271586824	396.377644249232	0	11.4435208530547						400	28	3	NaN	NaN	NaN	2.0585E-05	1	12673	92.707	79.433	1	229030			17247	855	14532	14957	17247	17247		
SEHQFNIDSMVHK	13	Unmodified	_SEHQFNIDSMVHK_			0	0	0	O60678	O60678	O60678	PRMT3	Protein arginine N-methyltransferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.580552	1570.71983	-0.59	-0.0003095	1.3727	0.00072009	0.7827	0.00041059	524.581004261238	7.1634	0.14186	7.1634	7.1191	7.261	0	759	25	0.814815566123307	0.0163386061083168	0.814815566123307	493.835465979974	0	9.9023429306244						284	17	4	NaN	NaN	NaN	0.021754	1	20675	43.168	36.028	1	80432			17248	273	14533	14958	17248	17248		
SEIDLFNIR	9	Unmodified	_SEIDLFNIR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.795663	1105.57677	0.93989	0.00052051	0.0048125	2.6651E-06	0.9447	0.00052317	553.795657807412	14.524	0.31035	14.524	14.435	14.746	0	612	46	0.914549654013882	0.0304250551653156	0.914549654013882	370.878353742073	0	12.3383069718516						878	36	4	NaN	NaN	NaN	1.7173E-08	1	6870	155.82	123.86	1	835370			17249	591	14534	14959	17249	17249		
SEIDLLDIR	9	Unmodified	_SEIDLLDIR_			0	0	0	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.295496	1072.57644	0.47167	0.00025343	-0.46524	-0.00024997	0.0064359	3.458E-06	537.295091455332	14.196	0.12415	14.196	14.134	14.258	0	627	40	0.90440375274676	0.0263903231913262	0.90440375274676	366.902772613961	0	10.7061505656836						385	15	4	NaN	NaN	NaN	0.00050156	1	6021	74.486	43.925	1	265790			17250	669	14535	14960	17250	17250		
SEIDLLNIR	9	Unmodified	_SEIDLLNIR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.803488	1071.59242	0.89476	0.00048031	-1.1229	-0.00060279	-0.22816	-0.00012248	536.802726288932	13.496	0.13301	13.496	13.46	13.593	0	618	43	0.910492137470517	0.0284104988036308	0.910492137470517	369.377040944975	0	11.5258392115393						339	16	4	NaN	NaN	NaN	7.3825E-06	1	6001	125.5	93.377	1	154810			17251	573	14536	14961	17251	17251		
SEIDMNDIK	9	Unmodified	_SEIDMNDIK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.750064	1063.48558	1.0051	0.00053549	2.1666	0.0011542	3.1717	0.0016897	533.253557710558	7.1368	0.38137	7.1368	6.9239	7.3053	-8.8818E-16	642	73	0.894250814548268	0.048791637772553	0.894250814548268	362.823186700955	0	19.7961659223525						975	44	5	NaN	NaN	NaN	0.00024822	1	5805	114.64	84.077	1	700120			17252	506	14537	14962	17252	17252		
SEIEYYAMLAK	11	Unmodified	_SEIEYYAMLAK_			0	0	0	P62888	P62888	P62888	RPL30	60S ribosomal protein L30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.323396	1316.63224	0.71834	0.00047362	0.72928	0.00048083	1.4476	0.00095445	659.323968581151	12.52	0.15958	12.52	12.449	12.609	0	498	52	0.991429299781895	0.0343150509571248	0.991429299781895	401.260943717021	0	13.8883223783911						454	19	3	NaN	NaN	NaN	0.0087773	1	12871	44.82	27.351	1	132360			17253	1411	14538	14963	17253	17253		
SEIIPMFSNLASDEQDSVR	19	Unmodified	_SEIIPMFSNLASDEQDSVR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.50715	2136.99975	1.1318	0.0012104	0.71224	0.00076175	1.844	0.0019722	1069.50826405091	16.502	0.30147	16.502	16.369	16.67	0	147	103	1.22562176648663	0.0675007518626181	1.22562176648663	494.062878971574	0	27.2103651468194						1700	35	4	NaN	NaN	NaN	8.2832E-11	1	33835	65.421	60.604	1	457430			17254	905	14539	14964	17254	17254		
SEISENTDASGK	12	Unmodified	_SEISENTDASGK_			0	0	0	Q9UHB6	Q9UHB6	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.280771	1236.54699	2.0044	0.0012413	-0.69157	-0.00042827	1.3128	0.00081298	619.280530813197	2.4193	0.15075	2.4193	2.4015	2.5523	0	645	25	0.892219381832517	0.0162548450794181	0.892219381832517	361.35051760915	0	6.58324264492035						115	18	2	NaN	NaN	NaN	2.1243E-05	1	10509	92.445	85.294	1	21431			17255	3211	14540	14965	17255	17255		
SEISLLPSDIDR	12	Unmodified	_SEISLLPSDIDR_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.853906	1343.69326	1.6266	0.0010944	-0.92323	-0.0006212	0.70334	0.00047325	672.853863883248	12.955	0.22169	12.955	12.822	13.043	0	492	49	0.995464410099171	0.0322853553889811	0.995464410099171	402.809803103125	0	13.064111097708						520	26	3	NaN	NaN	NaN	0.066633	1	13714	26.579	10.7	1	138110			17256	1064	14541	14966	17256	17256		
SELDMLDIR	9	Unmodified	_SELDMLDIR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.273706	1090.53286	0.12865	7.0277E-05	0.25641	0.00014007	0.38506	0.00021035	546.27384687863	13.15	0.17735	13.15	13.096	13.274	0	639	40	0.896281965493857	0.0264049676271125	0.896281965493857	363.531961256563	0	10.7098547532541						391	21	4	NaN	NaN	NaN	0.0011952	1	6472	99.305	64.373	1	191190			17257	573	14542	14967	17257	17257		
SELDQLRQEAEQLK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SELDQLRQEAEQLK_			1	0	1	P62873	P62873	P62873	GNB1	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.941773	1727.86899	2.0442	0.0017681	1.9256	0.0016655	3.9698	0.0034337	864.943355402915	15.136	0.09755	15.136	15.083	15.18	0	234	52	1.16792504164217	0.0339012683335864	1.16792504164217	471.523790433752	0	13.6868839824584						550	12	5	NaN	NaN	NaN	0.002435	1	25265	55.604	53.124	1	256610			17258	1408	14543	14968	17258	17258		
SELECVTNITLANVIR	16	Unmodified	_SELECVTNITLANVIR_			0	0	0	Q9Y6W5	Q9Y6W5	Q9Y6W5	WASF2	Wiskott-Aldrich syndrome protein family member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.48275	1830.95095	0.72513	0.00066457	-0.52301	-0.00047933	0.20212	0.00018524	916.48256645652	16.901	0.10644	16.901	16.865	16.972	0	264	34	1.14797626962532	0.0219602499318536	1.14797626962532	463.262200393624	0	8.86198954961401						272	13	4	NaN	NaN	NaN	1.2629E-06	1	28004	104.49	91.909	1	56416			17259	3476	14544	14969	17259	17259		
SELHIENLNMEADPGQYR	18	Unmodified	_SELHIENLNMEADPGQYR_			0	0	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.996982	2114.96912	1.5555	0.0010982	-0.035981	-2.5403E-05	1.5195	0.0010728	706.331542123535	10.968	0.26605	10.968	10.906	11.172	0	621	133	0.908462957275599	0.0891543024188109	0.908462957275599	549.353765657843	0	53.9122166359435						2058	31	7	NaN	NaN	NaN	1.6681E-07	1	33537	146.37	123.97	1	1290300			17260	976	14545	14970	17260	17260		
SELHIENLNMEADPGQYR	18	Oxidation (M)	_SELHIENLNM(Oxidation (M))EADPGQYR_	SELHIENLNM(1)EADPGQYR	SELHIENLNM(110)EADPGQYR	0	1	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.32862	2130.96403	0.99593	0.00070843	-0.038889	-2.7663E-05	0.95704	0.00068077	711.663014620841	9.1504	0.097529	9.1504	9.106	9.2036	0	639	103	0.896281965493857	0.0689874399689104	0.896281965493857	541.961321345115	0	41.7151360411074						711	12	4	NaN	NaN	NaN	2.502E-08	1	33746	111.38	104.52	1	160760			17261	976	14545	14971	17261	17261	354	
SELLGTDSAEPEMDVR	16	Unmodified	_SELLGTDSAEPEMDVR_			0	0	0	Q9NZ43	Q9NZ43	Q9NZ43	USE1	Vesicle transport protein USE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.903999	1747.79344	2.2067	0.0019307	0.66182	0.00057902	2.8686	0.0025097	875.405532839261	10.684	0.088683	10.684	10.631	10.72	0	318	31	1.11199926528787	0.0200119941897818	1.11199926528787	448.904271698714	0	8.0786651191512						131	11	2	NaN	NaN	NaN	0.0037769	1	25827	51.569	44.012	1	29319			17262	3126	14546	14972	17262	17262		
SELLLAEEPGFLEGEDGEDTAK	22	Unmodified	_SELLLAEEPGFLEGEDGEDTAK_			0	0	0	O15213	O15213	O15213	WDR46	WD repeat-containing protein 46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1175.05264	2348.09073	0.31713	0.00037264	0.61333	0.00072069	0.93046	0.0010933	1175.55495703448	15.916	0.062076	15.916	15.89	15.952	0	69	58	1.27715511956461	0.0376151518538832	1.27715511956461	514.537609178999	0	15.1543144660455						246	8	3	NaN	NaN	NaN	4.4683E-06	1	36030	59.997	54.655	1	41501			17263	155	14547	14973	17263	17263		
SELLNELMDSAK	12	Unmodified	_SELLNELMDSAK_			0	0	0	Q96EY7	Q96EY7	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.334492	1348.65443	0.10782	7.2814E-05	2.6171	0.0017674	2.7249	0.0018403	675.336049345245	14.843	0.11527	14.843	14.799	14.914	0	462	31	1.01562323939346	0.0201476911078267	1.01562323939346	410.951568216228	0	8.15235900041262						259	14	3	NaN	NaN	NaN	3.2593E-07	1	13851	83.775	71.179	1	74150			17264	2522	14548	14974	17264	17264		
SELLSQLQQHEEESR	15	Unmodified	_SELLSQLQQHEEESR_			0	0	0	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.939761	1811.86497	1.9367	0.0017565	-1.5463	-0.0014024	0.39047	0.00035413	906.937569968738	8.4672	0.070914	8.4672	8.4318	8.5027	0	264	22	1.14797626962532	0.0139747033128397	1.14797626962532	463.298890834669	0	5.63989406043669						94	9	2	NaN	NaN	NaN	2.4581E-08	1	27520	80.815	77.079	1	20689			17265	2425	14549	14975	17265	17265		
SELLSQLQQHEEESR	15	Unmodified	_SELLSQLQQHEEESR_			0	0	0	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.962266	1811.86497	0.10135	6.131E-05	0.63566	0.00038455	0.73701	0.00044586	605.297150548924	8.4672	0.13301	8.4672	8.414	8.547	0	669	40	0.875957769340875	0.0264453027366778	0.875957769340875	530.274737538957	0	16.0090776732103						340	16	4	NaN	NaN	NaN	3.0771E-06	1	27521	72.846	56.559	1	92518			17266	2425	14549	14975	17266	17266		
SELLVPGSQLILGPHESK	18	Unmodified	_SELLVPGSQLILGPHESK_			0	0	0	Q99575	Q99575	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.354436	1903.04148	0.54888	0.00034873	-0.54835	-0.0003484	0.0005231	3.3235E-07	635.353921124332	14.143	0.097549	14.143	14.099	14.196	0	570	28	0.942920803299286	0.0182221791516658	0.942920803299286	570.604298822066	0	11.027070058763						187	12	3	NaN	NaN	NaN	0.023068	1	29676	24.164	24.042	1	32677			17267	2652	14550	14976	17267	17267		
SELLVPGSQLILGPHESK	18	Unmodified	_SELLVPGSQLILGPHESK_			0	0	0	Q99575	Q99575	Q99575	POP1	Ribonucleases P/MRP protein subunit POP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.528015	1903.04148	0.96058	0.00091498	0.20644	0.00019664	1.167	0.0011116	953.029605219669	14.134	0.12415	14.134	14.081	14.205	0	99	49	1.25735632164274	0.031708472089486	1.25735632164274	507.257635410901	0	12.7922087778514						350	15	3	NaN	NaN	NaN	0.00033543	1	29677	67.838	61.462	1	64906			17268	2652	14550	14976	17268	17268		
SELPDSIESALQGDER	16	Unmodified	_SELPDSIESALQGDER_			0	0	0	Q9ULT8	Q9ULT8	Q9ULT8	HECTD1	E3 ubiquitin-protein ligase HECTD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.413045	1744.81154	2.0259	0.0017694	5.4062	0.0047219	7.4321	0.0064913	873.41870354274	13.815	0.12413	13.815	13.744	13.868	0	315	25	1.11400032671325	0.0160073906404907	1.11400032671325	449.718113828645	0	6.46212873868649						187	15	3	NaN	NaN	NaN	0.0029932	1	25740	54.199	29.51	1	34872			17269	3279	14551	14977	17269	17269		
SELPLDPLPVPTEEGNPLLK	20	Unmodified	_SELPLDPLPVPTEEGNPLLK_			0	0	0	Q15758	Q15758	Q15758	SLC1A5	Neutral amino acid transporter B(0)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1079.58573	2157.1569	0.90904	0.00098139	0.31084	0.00033558	1.2199	0.001317	1080.0875777691	18.107	0.20394	18.107	18.027	18.231	0	135	100	1.23356193185193	0.0654480984619874	1.23356193185193	497.233650099443	0	26.3813239125055						936	24	2	NaN	NaN	NaN	0.00074032	1	34136	59.997	57.756	1	768850			17270	1866	14552	14978	17270	17270		
SELTDSASVLDNFK	14	Unmodified	_SELTDSASVLDNFK_			0	0	0	O43815	O43815	O43815	STRN	Striatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.37266	1524.73077	1.5956	0.001218	3.6454	0.0027828	5.241	0.0040008	764.378609566879	13.629	0.16849	13.629	13.567	13.735	1.7764E-15	402	52	1.05585747106793	0.0341637123767462	1.05585747106793	426.730671438795	0	13.8074544347594						501	20	4	NaN	NaN	NaN	1.4343E-05	1	19264	101.45	93.888	1	82323			17271	234	14553	14979	17271	17271		
SELVAMLEEEELRK	14	Unmodified	_SELVAMLEEEELRK_			0	0	1	P40616	P40616	P40616	ARL1	ADP-ribosylation factor-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.290555	1674.84984	-0.32117	-0.00017963	-0.82839	-0.00046331	-1.1496	-0.00064294	559.289850317672	13.23	0.10641	13.23	13.194	13.3	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	525.674486821756	0	12.3265923788802						275	13	4	NaN	NaN	NaN	0.004468	1	23770	64.266	55.004	1	93621			17272	1019	14554	14980	17272	17272		
SELVAMLEEEELRK	14	Unmodified	_SELVAMLEEEELRK_			0	0	1	P40616	P40616	P40616	ARL1	ADP-ribosylation factor-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.432195	1674.84984	2.2406	0.0018786	2.4682	0.0020694	4.7088	0.003948	838.93831712042	13.238	0.23058	13.238	13.185	13.416	0	282	136	1.13599383354359	0.0898005368423045	1.13599383354359	458.747800227769	0	36.2641041872337						995	27	5	NaN	NaN	NaN	4.4373E-05	1	23772	82.437	55.06	1	352390			17273	1019	14554	14980	17273	17273		
SELVAMLEEEELRK	14	Oxidation (M)	_SELVAM(Oxidation (M))LEEEELRK_	SELVAM(1)LEEEELRK	SELVAM(69)LEEEELRK	0	1	1	P40616	P40616	P40616	ARL1	ADP-ribosylation factor-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.622194	1690.84475	0.28095	0.00015863	-0.35612	-0.00020107	-0.075175	-4.2445E-05	564.622251765219	11.004	0.1064	11.004	10.959	11.066	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	521.935265095836	0	12.3307720481522						247	13	3	NaN	NaN	NaN	0.00077554	1	24232	68.548	62.521	1	64160			17274	1019	14554	14981	17274	17274	371	
SELVNWYLK	9	Unmodified	_SELVNWYLK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.308406	1150.60226	0.39844	0.00022962	-1.1205	-0.00064573	-0.72203	-0.00041611	576.808848147558	13.017	0.15075	13.017	12.972	13.123	0	579	43	0.936845902828289	0.0283593603705795	0.936845902828289	379.737085655884	0	11.4950610614589						413	18	3	NaN	NaN	NaN	0.0039318	1	8092	49.325	33.743	1	113760			17275	1757	14555	14982	17275	17275		
SELVVDSQMQSIFTDIGK	18	Unmodified	_SELVVDSQMQSIFTDIGK_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.99843	1995.98231	0.92083	0.0009199	-1.1412	-0.00114	-0.22033	-0.00022011	999.499482759902	17.912	0.13298	17.912	17.849	17.982	0	219	61	1.17788915118882	0.039820885139483	1.17788915118882	475.037854578489	0	16.0595993476844						435	16	4	NaN	NaN	NaN	4.6193E-06	1	31564	59.997	50.418	1	76675			17276	1593	14556	14983	17276	17276		
SEMEMAHLYSLCDAAHAQTEVAK	23	Unmodified	_SEMEMAHLYSLCDAAHAQTEVAK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	648.793637	2591.14544	1.6498	0.0010704	1.978	0.0012833	3.6279	0.0023537	649.045220958889	10.986	0.14192	10.986	10.906	11.048	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	785.39851277464	0	16.2677604564184						317	17	5	NaN	NaN	NaN	0.035511	1	37210	8.4883	5.4139	1	82581			17277	389	14557	14984	17277	17277		
SEMEVQDAELK	11	Unmodified	_SEMEVQDAELK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.797743	1277.58093	1.9555	0.0012511	1.4795	0.00094661	3.4351	0.0021977	639.79922291555	6.5959	0.27486	6.5959	6.4806	6.7555	0	540	70	0.963152256458504	0.0465162659226231	0.963152256458504	389.940097209851	0	18.8324920946582						840	32	4	NaN	NaN	NaN	5.1229E-05	1	11686	94.804	61.408	1	867260			17278	3319	14558	14985	17278	17278		
SEMEVQDAELK	11	Oxidation (M)	_SEM(Oxidation (M))EVQDAELK_	SEM(1)EVQDAELK	SEM(53)EVQDAELK	0	1	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.7952	1293.57585	2.7149	0.0017587	3.3626	0.0021783	6.0775	0.003937	648.301371390816	4.4322	0.25712	4.4322	4.3613	4.6184	0	561	79	0.948993180460448	0.0525799752862226	0.948993180460448	384.156859408927	0	21.284618888361						821	30	4	NaN	NaN	NaN	0.012993	1	12173	53.028	48.121	1	223200			17279	3319	14558	14986	17279	17279	644	
SEMLEIVQAIYK	12	Unmodified	_SEMLEIVQAIYK_			0	0	0	P37235	P37235	P37235	HPCAL1	Hippocalcin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.378703	1422.74285	0.63507	0.00045241	-0.98069	-0.00069862	-0.34561	-0.00024621	712.378115120284	17.335	0.24827	17.335	17.264	17.513	0	480	37	1.00353128488872	0.0241972834927519	1.00353128488872	405.844238283756	0	9.78577173978283						587	29	5	NaN	NaN	NaN	2.1032E-11	1	16179	163.43	23.377	1	322510			17280	999	14559	14987	17280	17280		
SEMTPEELQK	10	Unmodified	_SEMTPEELQK_			0	0	0	P62316	P62316	P62316	SNRPD2	Small nuclear ribonucleoprotein Sm D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.281728	1190.5489	1.3423	0.0008004	-0.80355	-0.00047914	0.53876	0.00032125	596.782710725304	5.3278	0.33695	5.3278	5.2568	5.5937	0	609	61	0.916577990479294	0.0405864368098531	0.916577990479294	371.374106116116	0	16.4445926557931						1566	39	6	NaN	NaN	NaN	0.0047017	1	9165	76.605	61.842	1	1276900			17281	1386	14560	14988	17281	17281		
SENENQEQIEESK	13	Unmodified	_SENENQEQIEESK_			0	0	0	Q96JJ7	Q96JJ7	Q96JJ7	TMX3	Protein disulfide-isomerase TMX3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.342088	1562.66962	2.6388	0.0020644	-2.0504	-0.0016041	0.58838	0.00046031	782.340159862773	2.7208	0.070959	2.7208	2.703	2.774	0	510	31	0.983355730988811	0.0201867152025123	0.983355730988811	397.341886572349	0	8.1567913314538						93	9	2	NaN	NaN	NaN	2.2816E-05	1	20422	84.102	79.574	1	16829			17282	2569	14561	14989	17282	17282		
SENEPIENEAAK	12	Unmodified	_SENEPIENEAAK_			0	0	0	Q96I99	Q96I99	Q96I99	SUCLG2	Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.809696	1329.60484	2.1157	0.0014086	-2.2256	-0.0014818	-0.10991	-7.3179E-05	665.808660546701	3.3681	0.15071	3.3681	3.2971	3.4479	0	570	40	0.942920803299286	0.0263209282177764	0.942920803299286	381.589452016827	0	10.6517838402252						311	18	3	NaN	NaN	NaN	0.0057741	1	13265	58.889	47.534	1	92800			17283	2557	14562	14990	17283	17283		
SENGLEFTSSGSANTETTK	19	Unmodified	_SENGLEFTSSGSANTETTK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.442531	1958.87051	2.676	0.0026237	-2.0565	-0.0020163	0.61953	0.00060741	980.440288999227	6.6757	0.33695	6.6757	6.6225	6.9594	0	264	73	1.14797626962532	0.047923183275731	1.14797626962532	463.03468886902	0	19.3297517072662						1137	39	5	NaN	NaN	NaN	3.8586E-35	1	30872	219.59	202.18	1	280370			17284	794	14563	14991	17284	17284		
SENQEFYQDTFGQQWK	16	Unmodified	_SENQEFYQDTFGQQWK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.94504	2033.87553	1.3182	0.0013418	1.0023	0.0010203	2.3205	0.0023621	1018.44773778601	12.582	0.088633	12.582	12.538	12.626	0	222	34	1.17589687683038	0.0219180319547998	1.17589687683038	474.17334449302	0	8.83831458480131						259	11	4	NaN	NaN	NaN	1.0977E-06	1	32217	90.156	85.602	1	55801			17285	263	14564	14992	17285	17285		
SEPDDSDPFSFDGPEIMGCTGCQIDWK	27	Unmodified	_SEPDDSDPFSFDGPEIMGCTGCQIDWK_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1030.75278	3089.2365	0.67115	0.00069179	0.17779	0.00018325	0.84893	0.00087504	1031.42088218185	18.142	0.11528	18.142	18.098	18.213	0	447	34	1.02569221487577	0.0221486894009117	1.02569221487577	618.966316991992	0	13.3658933019611						285	14	4	NaN	NaN	NaN	7.6104E-05	1	38344	48.037	46.4	1	48002			17286	1269	14565	14993	17286	17286		
SEPHSLSSEALMR	13	Unmodified	_SEPHSLSSEALMR_			0	0	0	Q9NR28	Q9NR28	Q9NR28	DIABLO	Diablo homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.348465	1442.68238	2.3787	0.0017183	-2.1692	-0.0015669	0.20959	0.0001514	722.347337697835	6.0638	0.24829	6.0638	5.9751	6.2234	0	474	31	1.00756305028564	0.0201616152840689	1.00756305028564	407.420527942962	0	8.15259743882979						397	29	3	NaN	NaN	NaN	0.022743	1	16744	43.306	36.615	1	84240			17287	3010	14566	14994	17287	17287		
SEPIPESNDGPVK	13	Unmodified	_SEPIPESNDGPVK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.835714	1367.65687	2.0151	0.00138	0.3015	0.00020648	2.3166	0.0015865	684.83629484296	5.3898	0.43451	5.3898	5.3012	5.7357	0	534	103	0.967195187796614	0.0687109098914769	0.967195187796614	391.30097245275	0	27.7985728195145						1894	50	4	NaN	NaN	NaN	2.6809E-05	1	14421	99.174	83.295	1	1984100			17288	904	14567	14995	17288	17288		
SEPTQALELTEDDIK	15	Unmodified	_SEPTQALELTEDDIK_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.914889	1687.81523	1.9552	0.001652	-0.37622	-0.00031787	1.579	0.0013341	844.915143421399	11.704	0.37249	11.704	11.509	11.882	0	345	115	1.09397730668811	0.0761819952106531	1.09397730668811	441.752449590774	0	30.7625969874099						1613	43	3	NaN	NaN	NaN	0.0036739	1	24134	59.731	45.368	1	424250			17289	198	14568	14996	17289	17289		
SEQDQAENEGEDSAVLMER	19	Unmodified	_SEQDQAENEGEDSAVLMER_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.95294	2135.89132	2.5914	0.0027701	-1.177	-0.0012581	1.4144	0.001512	1069.45344390858	8.0858	0.14197	8.0858	8.0414	8.1833	0	237	61	1.16593139812432	0.0398756290089839	1.16593139812432	470.002554146439	0	16.0743998425368						686	17	5	NaN	NaN	NaN	1.9575E-45	1	33821	221.46	207.07	1	250010			17290	21	14569	14997	17290	17290		
SEQDQAENEGEDSAVLMER	19	Oxidation (M)	_SEQDQAENEGEDSAVLM(Oxidation (M))ER_	SEQDQAENEGEDSAVLM(1)ER	SEQDQAENEGEDSAVLM(53)ER	0	1	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.95039	2151.88623	2.4125	0.0025982	-2.1849	-0.0023531	0.22759	0.0002451	1076.94823937114	6.4363	0.053205	6.4363	6.4096	6.4629	0	240	25	1.16393748060522	0.0159524375137323	1.16393748060522	469.176249412566	0	6.43033232144853						116	7	3	NaN	NaN	NaN	0.00016365	1	34050	53.193	50.742	1	23552			17291	21	14569	14998	17291	17291	0	
SEQFINLR	8	Unmodified	_SEQFINLR_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.769448	1005.52434	-0.068524	-3.452E-05	0.52065	0.00026229	0.45213	0.00022777	503.769207092971	8.8399	0.16861	8.8399	8.7778	8.9464	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	349.879620578846	0	8.26594049907618						205	20	2	NaN	NaN	NaN	0.014183	1	4408	53.679	38.181	1	80299			17292	559	14570	14999	17292	17292		
SEQLEELFSQVGPVK	15	Unmodified	_SEQLEELFSQVGPVK_			0	0	0	Q9NW13	Q9NW13	Q9NW13	RBM28	RNA-binding protein 28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.438335	1688.86212	2.0602	0.0017417	0.89708	0.00075842	2.9572	0.0025002	845.439517502583	15.801	0.22171	15.801	15.704	15.925	0	336	79	1.09998710857178	0.0520885785221856	1.09998710857178	444.176984887953	0	21.0334717332498						954	22	4	NaN	NaN	NaN	9.7085E-12	1	24184	135.21	128.07	1	300110			17293	3078	14571	15000	17293	17293		
SEQPSLVIQK	10	Unmodified	_SEQPSLVIQK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.816596	1127.61864	0.82845	0.00046792	0.5484	0.00030975	1.3769	0.00077767	564.817051129724	6.3299	0.10642	6.3299	6.2855	6.3919	0	624	43	0.906433495720521	0.028418378530508	0.906433495720521	367.498519173726	0	11.5217631261281						208	13	2	NaN	NaN	NaN	0.0049361	1	7466	72.038	56.457	1	96093		+	17294	22	14572	15001	17294	17294		
SEQSVAQLEEEK	12	Unmodified	_SEQSVAQLEEEK_			0	0	0	Q07866	Q07866	Q07866	KLC1	Kinesin light chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.830628	1375.6467	1.2518	0.00086229	1.0735	0.00073949	2.3254	0.0016018	688.831810850856	5.443	0.13298	5.443	5.4076	5.5405	0	525	37	0.973257487423603	0.0242475250130607	0.973257487423603	393.730726221286	0	9.80932153703122						250	16	3	NaN	NaN	NaN	2.1832E-07	1	14663	127.03	90.788	1	67651			17295	1571	14573	15002	17295	17295		
SESELIDELSEDFDR	15	Unmodified	_SESELIDELSEDFDR_			0	0	0	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.397061	1782.77957	1.5929	0.0014215	1.141	0.0010183	2.7339	0.0024398	892.397087575435	17.477	0.14186	17.477	17.433	17.575	0	312	37	1.11600111266355	0.0240110882362814	1.11600111266355	450.450197534127	0	9.69156689568916						445	17	5	NaN	NaN	NaN	7.9571E-12	1	26745	112.95	99.776	1	146790			17296	785	14574	15003	17296	17296		
SESELIDELSEDFDRSECK	19	Unmodified	_SESELIDELSEDFDRSECK_			0	0	1	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.333877	2286.9798	0.29751	0.0002271	-0.42843	-0.00032704	-0.13092	-9.9937E-05	763.667907475821	15.934	0.088679	15.934	15.89	15.978	0	564	82	0.946969335010767	0.0546438748067893	0.946969335010767	572.358027336511	0	33.0273211962894						612	11	4	NaN	NaN	NaN	9.227E-08	1	35534	83.474	80.58	1	134140			17297	785	14575	15004	17297	17297		
SESEVEEAAAIIAQRPDNPR	20	Unmodified	_SESEVEEAAAIIAQRPDNPR_			0	0	1	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.029339	2181.06619	0.96708	0.00070406	4.1135	0.0029947	5.0806	0.0036988	728.366896902782	12.148	0.12417	12.148	12.068	12.192	0	429	52	1.03776581230406	0.034210897957768	1.03776581230406	627.420103718739	0	20.6834768408087						276	15	3	NaN	NaN	NaN	0.059974	1	34465	14.004	13.748	1	75877			17298	1897	14576	15005	17298	17298		
SESHTDLTFSR	11	Unmodified	_SESHTDLTFSR_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.299298	1278.58404	1.8862	0.0012078	-5.2047	-0.0033325	-3.3184	-0.0021248	640.795820532347	4.6273	0.11525	4.6273	4.5829	4.6982	0	570	40	0.942920803299286	0.0263245737571987	0.942920803299286	381.746051514889	0	10.6576311122423						225	14	3	NaN	NaN	NaN	0.019052	1	11715	57.888	32.031	1	54049			17299	156	14577	15006	17299	17299		
SESHTDLTFSR	11	Unmodified	_SESHTDLTFSR_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	427.201958	1278.58404	-0.60868	-0.00026003	0.27203	0.00011621	-0.33666	-0.00014382	427.202271976598	4.6184	0.08869	4.6184	4.5918	4.6805	0	867	19	0.741107305531458	0.0123155442994251	0.741107305531458	450.057507582523	0	7.47894823131793						104	11	2	NaN	NaN	NaN	0.0033017	1	11716	69.915	59.827	1	23681			17300	156	14577	15006	17300	17300		
SESLVVCDVAEDLVEK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SESLVVCDVAEDLVEK_			1	0	0	P60983	P60983	P60983	GMFB	Glia maturation factor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.442957	1832.87136	1.2654	0.0011609	0.1616	0.00014826	1.427	0.0013092	917.443452411535	19.383	0.070988	19.383	19.348	19.419	0	222	70	1.17589687683038	0.0457908805043117	1.17589687683038	474.525732818018	0	18.4786196441485						346	9	4	NaN	NaN	NaN	9.1554E-07	1	28045	84.999	75.738	1	77049			17301	1318	14578	15007	17301	17301		
SESQEEMLQVFNVETHTSK	19	Unmodified	_SESQEEMLQVFNVETHTSK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	741.679319	2222.01613	1.4091	0.0010451	-0.6851	-0.00050812	0.72396	0.00053695	742.013504407402	12.786	0.13302	12.786	12.724	12.857	0	483	28	1.00151498427745	0.0181467072344021	1.00151498427745	605.432764414783	0	10.9699917609083						307	16	5	NaN	NaN	NaN	6.2357E-09	1	34909	117.8	110.81	1	81954			17302	2900	14579	15008	17302	17302		
SESVPPVTDWAWYK	14	Unmodified	_SESVPPVTDWAWYK_			0	0	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.901388	1663.78822	2.2819	0.0019006	1.6847	0.0014032	3.9666	0.0033038	832.900735946811	15.065	0.31921	15.065	14.95	15.269	0	387	133	1.06589869032374	0.0881743259028329	1.06589869032374	430.464799896049	0	35.6093350149476						1939	37	7	NaN	NaN	NaN	7.3194E-06	1	23447	94.791	81.617	1	983310			17303	976	14580	15009	17303	17303		
SETAPAAPAAPAPAEK	16	Unmodified	_SETAPAAPAAPAPAEK_			0	0	0	P10412	P10412	P10412	HIST1H1E	Histone H1.4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.877913	1477.74127	2.36	0.0017461	-1.1315	-0.00083718	1.2285	0.00090896	739.87703123329	4.7159	0.26603	4.7159	4.6361	4.9021	0	459	88	1.01763759082241	0.0584646961375784	1.01763759082241	411.401554228147	0	23.6355919586638						1237	31	4	NaN	NaN	NaN	3.0838E-06	1	17824	87.573	0	1	386810			17304	625	14581	15010	17304	17304		
SETDTSLIR	9	Unmodified	_SETDTSLIR_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.261653	1020.50875	0.90692	0.00046368	0.1468	7.5052E-05	1.0537	0.00053873	511.262190962119	5.177	0.33696	5.177	5.1149	5.4519	0	702	49	0.853568545818287	0.0325910336061924	0.853568545818287	346.503626334051	0	13.2302336887244						722	39	4	NaN	NaN	NaN	6.7758E-06	1	4748	113.7	78.767	1	391200			17305	1016	14582	15011	17305	17305		
SETEDSILHQLFIVR	15	Unmodified	_SETEDSILHQLFIVR_			0	0	0	Q9UKG1	Q9UKG1	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.315981	1785.92611	-1.6382	-0.0009769	-2.4169	-0.0014412	-4.0551	-0.0024181	596.314507106031	16.404	0.10638	16.404	16.333	16.44	0	696	34	0.857641857947968	0.0224078882408908	0.857641857947968	519.244138234636	0	13.566460768529						144	13	3	NaN	NaN	NaN	0.035275	1	26857	18.098	16.256	1	24768			17306	3262	14583	15012	17306	17306		
SETEDSILHQLFIVR	15	Unmodified	_SETEDSILHQLFIVR_			0	0	0	Q9UKG1	Q9UKG1	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.315981	1785.92611	-2.0841	-0.0012428	0.26748	0.0001595	-1.8166	-0.0010833	596.316009827139	16.404	0.097552	16.404	16.36	16.457	0	741	31	0.827064408645228	0.020406225036543	0.827064408645228	500.731550431058	0	12.3545888254712						219	12	3	NaN	NaN	NaN	0.0019325	1	26858	43.306	43.306	1	56344			17307	3262	14583	15012	17307	17307		
SETEDSILHQLFIVR	15	Unmodified	_SETEDSILHQLFIVR_			0	0	0	Q9UKG1	Q9UKG1	Q9UKG1	APPL1	DCC-interacting protein 13-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.970333	1785.92611	0.95874	0.00085708	0.16447	0.00014703	1.1232	0.0010041	893.970791500063	16.404	0.08866	16.404	16.369	16.457	0	240	31	1.16393748060522	0.0199378074440928	1.16393748060522	469.792311858077	0	8.04736406260514						160	11	2	NaN	NaN	NaN	0.036124	1	26859	29.131	26.742	1	50726			17308	3262	14583	15012	17308	17308		
SETITADVNHNLK	13	Unmodified	_SETITADVNHNLK_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.367712	1440.72087	1.93	0.0013922	-1.9588	-0.001413	-0.02877	-2.0754E-05	721.367025688992	5.3898	0.16844	5.3898	5.3189	5.4873	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	414.756641075943	0	11.3980280866146						311	20	4	NaN	NaN	NaN	1.1322E-05	1	16693	136.84	100.6	1	104670			17309	1880	14584	15013	17309	17309		
SETITEEELVGLMNK	15	Unmodified	_SETITEEELVGLMNK_			0	0	0	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.92166	1691.82877	2.13	0.001804	0.51464	0.00043586	2.6447	0.0022398	846.922669488599	15.092	0.23057	15.092	14.976	15.207	0	330	76	1.10399226369747	0.0500610283962133	1.10399226369747	445.787913531555	0	20.2144545137023						880	27	4	NaN	NaN	NaN	6.8921E-44	1	24252	266.12	239.55	1	370560			17310	724	14585	15014	17310	17310		
SEVMFFADATSHLEEK	16	Unmodified	_SEVMFFADATSHLEEK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.924734	1839.83492	1.9436	0.0017899	0.27553	0.00025374	2.2191	0.0020436	921.426602163391	13.504	0.12413	13.504	13.478	13.602	0	144	34	1.22760721615852	0.0218399494714345	1.22760721615852	495.379029647464	0	8.81312266195738						256	15	3	NaN	NaN	NaN	3.0838E-06	1	28214	72.327	60.845	1	50438			17311	3308	14586	15015	17311	17311		
SEVPEDLAGFIELFQTPSHTK	21	Unmodified	_SEVPEDLAGFIELFQTPSHTK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.393507	2344.15869	0.94856	0.00074215	0.80299	0.00062825	1.7515	0.0013704	782.72840551891	19.703	0.053198	19.703	19.676	19.729	0	390	55	1.06389100039157	0.0361608698716229	1.06389100039157	642.932021684506	0	21.8527848848012						203	7	4	NaN	NaN	NaN	0.04525	1	35990	20.734	17.481	1	31343			17312	1074	14587	15016	17312	17312		
SEVQAMLGQSTEELR	15	Oxidation (M)	_SEVQAM(Oxidation (M))LGQSTEELR_	SEVQAM(1)LGQSTEELR	SEVQAM(64)LGQSTEELR	0	1	0	CON__Q03247	CON__Q03247	CON__Q03247			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.406708	1692.79886	2.3734	0.0020112	-1.6419	-0.0013914	0.73148	0.00061986	847.40537559526	8.0325	0.21297	8.0325	7.9793	8.1922	0	363	46	1.08195024817156	0.0300904538229143	1.08195024817156	436.885404189592	0	12.1503554372194						514	25	3	NaN	NaN	NaN	0.017285	1	24279	63.766	58.672	1	147070		+	17313	35	14588	15017	17313	17313	14	
SEVSSDEDIQFR	12	Unmodified	_SEVSSDEDIQFR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.320428	1410.6263	2.0003	0.0014128	-0.3213	-0.00022694	1.679	0.0011859	706.31984716285	7.3408	0.35468	7.3408	7.2698	7.6245	0	516	37	0.979317271586824	0.024237464198638	0.979317271586824	396.084448877411	0	9.80283196042092						355	41	2	NaN	NaN	NaN	6.9751E-05	1	15764	92.428	76.548	1	199900			17314	1026	14589	15018	17314	17314		
SEVTFLAPVTRPDK	14	Unmodified	_SEVTFLAPVTRPDK_			0	0	1	Q96GK7	Q96GK7	Q96GK7	FAHD2A	Fumarylacetoacetate hydrolase domain-containing protein 2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.42503	1558.83551	1.9138	0.0014936	-0.98927	-0.00077205	0.92456	0.00072155	780.42378519079	9.6647	0.11528	9.6647	9.5938	9.709	0	399	46	1.0578662689527	0.0301195105360905	1.0578662689527	427.458387764281	0	12.1705718311189						308	14	3	NaN	NaN	NaN	1.8168E-06	1	20325	99.276	92.529	1	79151			17315	2543	14590	15019	17315	17315		
SEWGSLLEELVAEGK	15	Unmodified	_SEWGSLLEELVAEGK_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.917235	1645.81992	0.97634	0.00080443	0.46238	0.00038097	1.4387	0.0011854	823.917799623361	19.605	0.079803	19.605	19.579	19.658	0	381	46	1.06991323971056	0.030094602206975	1.06991323971056	432.125045632149	0	12.1548466448443						217	10	3	NaN	NaN	NaN	2.0927E-09	1	22918	123.92	113.67	1	65592			17316	744	14591	15020	17316	17316		
SEWSDLLSDLQK	12	Unmodified	_SEWSDLLSDLQK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.851364	1419.68817	1.2013	0.00085398	0.043239	3.0736E-05	1.2446	0.00088471	710.851694486598	17.805	0.22167	17.805	17.743	17.965	0	495	55	0.993446994398923	0.0363109867512514	0.993446994398923	401.774307282582	0	14.6850527818627						710	26	5	NaN	NaN	NaN	1.7424E-05	1	16083	94.66	74.477	1	329910			17317	578	14592	15021	17317	17317		
SFAELLHQCWEADAK	15	Unmodified	_SFAELLHQCWEADAK_			0	0	0	Q9NYL2	Q9NYL2	Q9NYL2	ZAK	Mitogen-activated protein kinase kinase kinase MLT	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.919786	1803.82502	1.7681	0.0015964	0.34918	0.00031528	2.1172	0.0019117	903.42102944538	13.912	0.070942	13.912	13.877	13.948	0	240	31	1.16393748060522	0.0199405477396462	1.16393748060522	469.756394140332	0	8.04785476835804						119	9	3	NaN	NaN	NaN	0.0010138	1	27312	53.051	49.763	1	22942			17318	3117	14593	15022	17318	17318		
SFAGAVSPQEEEEFRR	16	Unmodified	_SFAGAVSPQEEEEFRR_			0	0	1	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.627107	1837.85949	0.56364	0.00034586	1.5785	0.0009686	2.1421	0.0013145	613.628179972189	7.8995	0.11526	7.8995	7.8374	7.9527	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	537.601218362261	0	9.84043369468941						172	14	2	NaN	NaN	NaN	0.00017648	1	28179	86.243	59.777	1	60264			17319	951	14594	15023	17319	17319		
SFALLFDDIDHNMCAADK	18	Unmodified	_SFALLFDDIDHNMCAADK_			0	0	0	O60502	O60502	O60502	MGEA5	Protein O-GlcNAcase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.980164	2081.91866	-1.2352	-0.00085842	-0.098388	-6.8378E-05	-1.3336	-0.0009268	695.314463862491	16.856	0.088672	16.856	16.812	16.901	0	651	25	0.888155670855968	0.0162593562180621	0.888155670855968	537.12937574734	0	9.83316116987066						210	11	4	NaN	NaN	NaN	3.2702E-05	1	33058	61.067	56.76	1	45706			17320	262	14595	15024	17320	17320		
SFANTLVDVCAYAGSGNVLK	20	Unmodified	_SFANTLVDVCAYAGSGNVLK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.013973	2085.02009	0.19225	0.00013381	-0.59843	-0.00041651	-0.40617	-0.0002827	696.347312152287	15.987	0.15074	15.987	15.925	16.076	0	501	25	0.98941132619024	0.0161471385123466	0.98941132619024	598.359808404544	0	9.76519921571185						187	18	4	NaN	NaN	NaN	0.0039021	1	33101	66.485	58.91	1	40519			17321	1642	14596	15025	17321	17321		
SFANTLVDVCAYAGSGNVLK	20	Unmodified	_SFANTLVDVCAYAGSGNVLK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.51732	2085.02009	1.0447	0.0010901	1.447	0.00151	2.4917	0.0026001	1044.0208904678	15.978	0.21281	15.978	15.872	16.085	0	144	55	1.22760721615852	0.0357405583621779	1.22760721615852	494.942892416776	0	14.4097681241415						621	25	4	NaN	NaN	NaN	4.2572E-06	1	33102	114.35	94.458	1	166760			17322	1642	14596	15025	17322	17322		
SFAPILPHLAEEVFQHIPYIK	21	Unmodified	_SFAPILPHLAEEVFQHIPYIK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.114127	2448.32055	0.75603	0.00061776	-0.13671	-0.00011171	0.61932	0.00050606	817.447481248073	20.013	0.044358	20.013	19.986	20.031	0	372	31	1.07593298845566	0.0200616822933108	1.07593298845566	650.046307461587	0	12.1206642385345						103	6	4	NaN	NaN	NaN	0.00037595	1	36571	51.07	46.472	1	24096			17323	3037	14597	15026	17323	17323		
SFDAVLEALSR	11	Unmodified	_SFDAVLEALSR_			0	0	0	Q6P1N0	Q6P1N0	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.319502	1206.62445	-1.033	-0.00062425	0.05607	3.3884E-05	-0.97692	-0.00059037	604.318960730479	16.812	0.088655	16.812	16.759	16.847	0	618	43	0.910492137470517	0.0283947491785544	0.910492137470517	368.851958754152	0	11.5030744603018						249	11	3	NaN	NaN	NaN	1.0879E-07	1	9643	105.36	77.622	1	75401			17324	2060	14598	15027	17324	17324		
SFDDEEIQK	9	Unmodified	_SFDDEEIQK_			0	0	0	O43823	O43823	O43823	AKAP8	A-kinase anchor protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.751118	1109.48768	1.4031	0.00077976	2.797	0.0015544	4.2	0.0023342	555.75289104005	5.0706	0.17732	5.0706	5.0351	5.2125	0	657	25	0.884090832094921	0.0162638692349029	0.884090832094921	358.510781101783	0	6.59521878461948						278	21	4	NaN	NaN	NaN	0.052595	1	6968	43.734	24.247	1	60426			17325	237	14599	15028	17325	17325		
SFDFEIETK	9	Unmodified	_SFDFEIETK_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.266404	1114.51826	0.4604	0.00025703	2.1413	0.0011954	2.6017	0.0014525	558.267029787004	11.5	0.1508	11.5	11.456	11.607	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.841708759627	0	8.22529407455869						291	18	4	NaN	NaN	NaN	0.0016475	1	7104	88.921	62.464	1	71914			17326	1579	14600	15029	17326	17326		
SFDLIHSPHGELK	13	Unmodified	_SFDLIHSPHGELK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.924536	1478.75178	-0.16324	-8.0626E-05	0.23924	0.00011816	0.076001	3.7539E-05	493.924655852101	7.8729	0.14186	7.8729	7.8197	7.9615	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	504.005630242839	0	12.3708762941708						323	17	4	NaN	NaN	NaN	1.3889E-05	1	17867	94.66	79.512	1	126030			17327	3308	14601	15030	17327	17327		
SFDLLILK	8	Unmodified	_SFDLLILK_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.791861	947.569169	-1.168	-0.00055457	-1.1932	-0.00056651	-2.3612	-0.0011211	474.791463423051	16.191	0.08867	16.191	16.156	16.245	0	717	43	0.84338031290707	0.028536968892656	0.84338031290707	342.718199187899	0	11.59635628138						225	11	2	NaN	NaN	NaN	0.0063831	1	3205	49.325	15.512	1	63648			17328	2328	14602	15031	17328	17328		
SFDLLVK	7	Unmodified	_SFDLLVK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.242004	820.469455	-2.125	-0.00087389	-1.0461	-0.0004302	-3.1711	-0.0013041	411.241523462559	11.367	0.19513	11.367	11.323	11.518	0	804	28	0.78414869089473	0.0184180594239544	0.78414869089473	319.35341844945	0	7.50096289969395						254	23	3	NaN	NaN	NaN	0.036857	1	1212	49.058	36.505	1	73529			17329	2950	14603	15032	17329	17329		
SFDVNKPGCEVDDLK	15	Unmodified	_SFDVNKPGCEVDDLK_			0	0	1	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.938293	1721.79305	-0.51198	-0.00029436	0.036709	2.1106E-05	-0.47527	-0.00027325	574.938397948363	7.935	0.15076	7.935	7.8906	8.0414	0	753	46	0.81889964927511	0.0306285018586598	0.81889964927511	495.930431901837	0	18.5488004161649						511	18	5	NaN	NaN	NaN	3.3976E-05	1	25094	68.108	52.96	1	257520			17330	1027	14604	15033	17330	17330		
SFDVNKPGCEVDDLK	15	Unmodified	_SFDVNKPGCEVDDLK_			0	0	1	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.903802	1721.79305	3.3398	0.0028786	-3.4576	-0.0029801	-0.11785	-0.00010158	861.900120029833	7.935	0.24849	7.935	7.8285	8.077	0	330	64	1.10399226369747	0.0420744304878624	1.10399226369747	445.724888197268	0	16.9870944225251						890	29	5	NaN	NaN	NaN	5.7245E-06	1	25095	94.507	74.171	1	328430			17331	1027	14604	15033	17331	17331		
SFEAPATINSASLHPEK	17	Unmodified	_SFEAPATINSASLHPEK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.95214	1797.88973	2.02	0.0018179	-0.22165	-0.00019947	1.7983	0.0016184	899.952023508866	8.618	0.12431	8.618	8.5648	8.6891	0	162	46	1.21569043230068	0.0298144541275307	1.21569043230068	490.655854831503	0	12.0331920755465						443	15	4	NaN	NaN	NaN	1.6313E-25	1	27162	172.09	154.67	1	115800			17332	3394	14605	15034	17332	17332		
SFEDIHHYR	9	Unmodified	_SFEDIHHYR_			0	0	0	P01116	P01116	P01116	KRAS	GTPase KRas;GTPase KRas, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.856233	1202.54687	0.047457	1.9071E-05	-0.69918	-0.00028097	-0.65172	-0.0002619	401.855885519917	3.7938	0.09753	3.7938	3.7672	3.8647	-4.4409E-16	894	22	0.722622390967862	0.0143871873657558	0.722622390967862	439.127968348268	0	8.7429014615895						152	12	3	NaN	NaN	NaN	0.0012323	1	9527	47.349	38.586	1	39277			17333	490	14606	15035	17333	17333		
SFENDAQSSDNINFLK	16	Unmodified	_SFENDAQSSDNINFLK_			0	0	0	O15357	O15357	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.921037	1827.82752	1.4909	0.0013641	-1.6479	-0.0015077	-0.15697	-0.00014362	914.918729132728	11.731	0.13299	11.731	11.678	11.811	0	306	40	1.12000185836644	0.0260066420921716	1.12000185836644	451.979025458943	0	10.4950332541622						356	16	4	NaN	NaN	NaN	3.0879E-12	1	27912	144.2	137.45	1	79536			17334	167	14607	15036	17334	17334		
SFENIQNWMK	10	Unmodified	_SFENIQNWMK_			0	0	0	P51153	P51153	P51153	RAB13	Ras-related protein Rab-13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.805705	1295.59686	0.6326	0.00041043	-0.52916	-0.00034332	0.10344	6.7109E-05	648.805460786433	13.043	0.12415	13.043	12.999	13.123	0	561	40	0.948993180460448	0.0263027118748081	0.948993180460448	384.150543620758	0	10.6472852212755						324	15	4	NaN	NaN	NaN	1.6755E-05	1	12224	88.921	76.854	1	90612			17335	1182	14608	15037	17335	17335		
SFEQISANITK	11	Unmodified	_SFEQISANITK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.324785	1236.63502	1.3243	0.0008202	-1.6181	-0.0010021	-0.29379	-0.00018195	619.32343366583	9.0883	0.17736	9.0883	9.0174	9.1947	0	567	43	0.944945209309785	0.0283318814612601	0.944945209309785	382.704279455465	0	11.4744560567369						379	21	3	NaN	NaN	NaN	0.0061393	1	10523	51.531	41.452	1	117120			17336	578	14609	15038	17336	17336		
SFESTVGQGSDTYIYIFR	18	Unmodified	_SFESTVGQGSDTYIYIFR_			0	0	0	P20645	P20645	P20645	M6PR	Cation-dependent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.49437	2068.97419	1.1369	0.0011773	1.3757	0.0014245	2.5126	0.0026018	1035.49662173937	16.236	0.28375	16.236	16.191	16.475	0	180	49	1.203763835057	0.0318129977486037	1.203763835057	485.354693369006	0	12.8269244495879						512	33	4	NaN	NaN	NaN	1.1966E-10	1	32863	130.78	125.39	1	106580			17337	782	14610	15039	17337	17337		
SFEWLSQMR	9	Unmodified	_SFEWLSQMR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.281866	1182.54918	0.31108	0.00018425	-0.50546	-0.00029938	-0.19438	-0.00011513	592.281654468064	14.054	0.15961	14.054	14.001	14.161	0	612	43	0.914549654013882	0.0283986853568062	0.914549654013882	370.580990217443	0	11.5073171743161						339	19	3	NaN	NaN	NaN	5.1727E-06	1	8934	109.36	95.709	1	96391			17338	1737	14611	15040	17338	17338		
SFFDNISCDDNR	12	Unmodified	_SFFDNISCDDNR_			0	0	0	Q8ND56	Q8ND56	Q8ND56	LSM14A	Protein LSM14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.304255	1488.59396	1.589	0.0011843	0.07757	5.7813E-05	1.6666	0.0012421	745.30429849012	10.888	0.14189	10.888	10.844	10.986	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.559434182896	0	8.14345488643374						291	17	3	NaN	NaN	NaN	0.044828	1	18181	51.531	45.665	1	89321			17339	2304	14612	15041	17339	17339		
SFFDPTSQHR	10	Unmodified	_SFFDPTSQHR_			0	0	0	Q86WB0	Q86WB0	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.285994	1220.55744	1.3346	0.00081581	9.3005	0.0056853	10.635	0.0065011	611.792226186935	6.5781	0.34581	6.5781	6.4096	6.7555	0	600	46	0.922661313351899	0.030408192841195	0.922661313351899	373.733557416581	0	12.3171546489398						713	40	4	NaN	NaN	NaN	0.02877	1	10025	39.01	20.674	1	248990			17340	2179	14613	15042	17340	17340		
SFFEGHFK	8	Unmodified	_SFFEGHFK_			0	0	0	P57678	P57678	P57678	GEMIN4	Gem-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.74016	997.465767	0.064013	3.199E-05	2.6457	0.0013222	2.7097	0.0013542	499.740728893276	7.2166	0.15075	7.2166	7.1634	7.3142	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	346.610109746202	0	7.44377486168617						192	18	3	NaN	NaN	NaN	0.012404	1	4229	51.43	36.895	1	54487			17341	1294	14614	15043	17341	17341		
SFFQIMFK	8	Unmodified	_SFFQIMFK_			0	0	0	Q9Y2P8	Q9Y2P8	Q9Y2P8	RCL1	RNA 3-terminal phosphate cyclase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.270238	1046.52592	-1.6364	-0.00085791	-0.65171	-0.00034167	-2.2881	-0.0011996	524.269894131167	16.723	0.11528	16.723	16.688	16.803	0	705	25	0.851531465363931	0.0162977768340994	0.851531465363931	345.562305446597	0	6.61384524885239						209	14	3	NaN	NaN	NaN	0.0035868	1	5393	63.301	51.652	1	43488			17342	3344	14615	15044	17342	17342		
SFFSEIISSISDVK	14	Unmodified	_SFFSEIISSISDVK_			0	0	0	P63151;Q66LE6;Q00005	P63151	P63151	PPP2R2A;PPP2R2D;PPP2R2B	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B delta isoform;Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.903596	1557.79264	0.93221	0.00072703	-0.4565	-0.00035603	0.47571	0.00037101	779.903125160986	20.111	0.044326	20.111	20.111	20.155	0	399	79	1.0578662689527	0.0521747937018635	1.0578662689527	427.460905175515	0	21.0827069523866						141	6	3	NaN	NaN	NaN	0.0039785	1	20294	47.361	39.804	1	55025			17343	1428	14616	15045	17343	17343		
SFGGEVSWDK	10	Unmodified	_SFGGEVSWDK_			0	0	0	O00541	O00541	O00541	PES1	Pescadillo homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.256371	1110.49819	0.21709	0.00012076	-0.21354	-0.00011878	0.0035478	1.9735E-06	556.256169322897	8.4495	0.20395	8.4495	8.3608	8.5648	0	675	34	0.871889544407995	0.0223798999073166	0.871889544407995	353.559059659029	0	9.07525089300918						318	24	3	NaN	NaN	NaN	0.0045502	1	6994	69.915	47.529	1	92756			17344	90	14617	15046	17344	17344		
SFGSAQEFAWAHDSSEYAIR	20	Unmodified	_SFGSAQEFAWAHDSSEYAIR_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	753.674897	2258.00286	1.2446	0.00093802	-0.34439	-0.00025955	0.90021	0.00067847	754.008847543728	12.742	0.14189	12.742	12.697	12.839	0	573	52	0.940896116921038	0.0344196803127764	0.940896116921038	568.731349036043	0	20.8052205398967						523	17	5	NaN	NaN	NaN	3.4638E-11	1	35251	106.58	105.1	1	171690			17345	973	14618	15047	17345	17345		
SFGSTCQLSEK	11	Unmodified	_SFGSTCQLSEK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.284802	1242.55505	2.3641	0.0014711	-1.0499	-0.00065336	1.3142	0.00081778	622.284322368535	4.9199	0.18616	4.9199	4.8844	5.0706	0	519	31	0.97729762293174	0.0202006798599824	0.97729762293174	395.78623506634	0	8.18087636760913						351	22	4	NaN	NaN	NaN	0.00042407	1	10690	64.064	43.831	1	126980			17346	652	14619	15048	17346	17346		
SFGWETLDSFMQHDVQELCR	20	Unmodified	_SFGWETLDSFMQHDVQELCR_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.03522	2484.08383	0.0096249	7.9794E-06	-1.1906	-0.00098708	-1.181	-0.0009791	829.368112677608	19.117	0.053208	19.117	19.091	19.144	0	555	25	0.953040030838688	0.016187402676465	0.953040030838688	575.75131052401	0	9.77914673400755						154	7	4	NaN	NaN	NaN	1.7784E-07	1	36747	63.79	63.355	1	33700			17347	2452	14620	15049	17347	17347		
SFIDPYQHIIVEHQYSHK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SFIDPYQHIIVEHQYSHK_			1	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	571.535281	2282.11202	-1.0407	-0.00059482	-0.35289	-0.00020169	-1.3936	-0.00079651	571.785997411053	12.431	0.15073	12.431	12.396	12.547	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	655.004601380039	0	16.4611614164191						451	18	6	NaN	NaN	NaN	0.00021965	1	35485	73.891	61.04	1	270800			17348	1098	14621	15050	17348	17348		
SFIDPYQHIIVEHQYSHK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SFIDPYQHIIVEHQYSHK_			1	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.711282	2282.11202	1.1664	0.00088846	-0.0090249	-6.8744E-06	1.1574	0.00088159	762.045478226879	12.44	0.16847	12.44	12.396	12.564	0	486	34	0.999498404980629	0.0221854416206791	0.999498404980629	604.114913055182	0	13.4092821649147						442	20	5	NaN	NaN	NaN	1.7056E-10	1	35486	176	156.99	1	168370			17349	1098	14621	15050	17349	17349		
SFITTDVNPYYDSFVR	16	Unmodified	_SFITTDVNPYYDSFVR_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.459798	1922.90504	1.7123	0.001648	1.1134	0.0010716	2.8257	0.0027197	962.962492031649	15.73	0.25715	15.73	15.624	15.881	0	216	76	1.17988115188462	0.0498342760259569	1.17988115188462	475.966085834464	0	20.1032326540533						1074	30	5	NaN	NaN	NaN	1.4533E-24	1	30112	146.58	136.33	1	513420			17350	3161	14622	15051	17350	17350		
SFLDDPIWR	9	Unmodified	_SFLDDPIWR_			0	0	0	Q7L576	Q7L576	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.790381	1147.56621	0.22315	0.00012826	-1.3565	-0.00077969	-1.1333	-0.00065143	574.789486587696	15.482	0.142	15.482	15.42	15.562	0	639	46	0.896281965493857	0.0304714989453929	0.896281965493857	363.306457606507	0	12.3515732392442						370	17	4	NaN	NaN	NaN	0.0015195	1	7996	53.878	48.13	1	105640			17351	2117	14623	15052	17351	17351		
SFLDSGYR	8	Unmodified	_SFLDSGYR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.727249	943.439946	-0.37017	-0.00017499	2.3926	0.001131	2.0224	0.00095604	472.728668721134	7.8463	0.21283	7.8463	7.7487	7.9615	0	759	52	0.814815566123307	0.0346978263217897	0.814815566123307	331.131256678733	0	14.1007797489916						374	25	3	NaN	NaN	NaN	0.0094452	1	3117	53.679	34.724	1	112490			17352	753	14624	15053	17352	17352		
SFLEEVLASGLHSR	14	Unmodified	_SFLEEVLASGLHSR_			0	0	0	Q9NRW7	Q9NRW7	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.607095	1543.79946	-0.86239	-0.00044466	-2.0288	-0.001046	-2.8912	-0.0014907	515.605805236848	16.564	0.1064	16.564	16.51	16.617	0	699	22	0.85560534332665	0.0142575833837986	0.85560534332665	518.635863809464	0	8.64241221933185						186	13	3	NaN	NaN	NaN	0.058072	1	19856	33.1	27.95	1	46826			17353	3027	14625	15054	17353	17353		
SFLEFAEDVIQVPR	14	Unmodified	_SFLEFAEDVIQVPR_			0	0	0	Q06787	Q06787	Q06787	FMR1	Fragile X mental retardation protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.430313	1648.84607	1.48	0.0012217	-0.85112	-0.00070254	0.6289	0.00051911	825.428673532329	19.641	0.097538	19.641	19.587	19.685	0	357	52	1.08596037261705	0.0340837206319853	1.08596037261705	438.599573903457	0	13.7657926782424						252	12	3	NaN	NaN	NaN	2.7894E-09	1	23002	103.69	99.158	1	54099			17354	1563	14626	15055	17354	17354		
SFLLALPAPLVTPEASAEAR	20	Unmodified	_SFLLALPAPLVTPEASAEAR_			0	0	0	O00459	O00459	O00459	PIK3R2	Phosphatidylinositol 3-kinase regulatory subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.07005	2052.12554	0.36053	0.00037029	0.68185	0.00070031	1.0424	0.0010706	1027.06923063264	19.082	0.035451	19.082	19.055	19.091	0	207	13	1.18585551256002	0.00796417342289124	1.18585551256002	478.160272368957	0	3.21131140577347						31	5	2	NaN	NaN	NaN	0.010671	1	32575	20.29	18.188	1	5274.2			17355	81	14627	15056	17355	17355		
SFLLDFMLR	9	Unmodified	_SFLLDFMLR_			0	0	0	Q8NHH9	Q8NHH9	Q8NHH9	ATL2	Atlastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.307352	1140.60015	-0.25447	-0.00014538	-0.41263	-0.00023574	-0.66709	-0.00038112	571.307114934295	19.375	0.0533	19.375	19.348	19.401	0	603	19	0.920633820089869	0.0121658030676073	0.920633820089869	373.204498596354	0	4.93174629781163						56	7	2	NaN	NaN	NaN	0.0015195	1	7811	53.878	0	1	10794			17356	2323	14628	15057	17356	17356		
SFLLDLLNATGK	12	Unmodified	_SFLLDLLNATGK_			0	0	0	O00571	O00571	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.366453	1290.71835	0.22003	0.00014222	-0.32287	-0.0002087	-0.10285	-6.6478E-05	646.366344693873	19.197	0.13299	19.197	19.153	19.286	-3.5527E-15	543	61	0.961130371139249	0.0404293325417993	0.961130371139249	389.079166650999	0	16.3663655690893						614	16	5	NaN	NaN	NaN	5.0455E-11	1	12106	148.9	83.743	1	443150			17357	93	14629	15058	17357	17357		
SFLSQGQVLK	10	Unmodified	_SFLSQGQVLK_			0	0	0	P48047	P48047	P48047	ATP5O	ATP synthase subunit O, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.813856	1105.61316	0.035495	1.9658E-05	-0.7102	-0.00039332	-0.6747	-0.00037366	553.8141828409	9.3011	0.18625	9.3011	9.2479	9.4342	0	639	37	0.896281965493857	0.0243687449926693	0.896281965493857	363.47009332793	0	9.88228075289857						286	22	2	NaN	NaN	NaN	0.0010791	1	6875	72.042	56.543	1	95065			17358	1104	14630	15059	17358	17358		
SFLYEIVSNK	10	Unmodified	_SFLYEIVSNK_			0	0	0	Q9Y3Z3	Q9Y3Z3	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.318971	1198.62339	0.2803	0.00016827	1.72	0.0010326	2.0003	0.0012008	600.319537324032	13.159	0.13303	13.159	13.079	13.212	0	582	37	0.934820374997243	0.0243147574808095	0.934820374997243	378.736213617345	0	9.8509611360717						417	16	6	NaN	NaN	NaN	0.0022566	1	9425	78.816	49.506	1	94771			17359	3402	14631	15060	17359	17359		
SFMALSQDIQK	11	Unmodified	_SFMALSQDIQK_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.321188	1266.62782	1.6734	0.0010615	-2.189	-0.0013885	-0.51563	-0.00032707	634.32182138951	10.746	0.11527	10.746	10.667	10.782	0	531	46	0.969216233931596	0.0303240911263755	0.969216233931596	392.431451489322	0	12.2780930397189						328	14	4	NaN	NaN	NaN	0.00077909	1	11410	57.888	44.614	1	190160			17360	1752	14632	15061	17360	17360		
SFMALSQDIQK	11	Oxidation (M)	_SFM(Oxidation (M))ALSQDIQK_	SFM(1)ALSQDIQK	SFM(49)ALSQDIQK	0	1	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.318645	1282.62274	1.5065	0.00096768	0.43214	0.00027757	1.9387	0.0012452	642.318049526765	8.2188	0.12422	8.2188	8.1745	8.2987	0	519	22	0.97729762293174	0.014139497057216	0.97729762293174	395.650335167605	0	5.72425085104254						120	15	2	NaN	NaN	NaN	0.002852	1	11838	48.785	41.635	1	39978			17361	1752	14632	15062	17361	17361	561	
SFMDQPLAEHFSPFR	15	Unmodified	_SFMDQPLAEHFSPFR_			0	0	0	Q13309	Q13309	Q13309	SKP2	S-phase kinase-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.619006	1807.83519	-0.66629	-0.00040219	0.43007	0.0002596	-0.23622	-0.00014259	603.953347421679	14.994	0.079827	14.994	14.959	15.038	0	654	22	0.886123392477847	0.0142259494684417	0.886123392477847	536.437730112399	0	8.61204670402083						168	10	4	NaN	NaN	NaN	0.022649	1	27417	23.931	22.879	1	34979			17362	1652	14633	15063	17362	17362		
SFMESGGTVLSTNWSDVGK	19	Unmodified	_SFMESGGTVLSTNWSDVGK_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.46475	2000.91496	1.2942	0.001296	2.1068	0.0021099	3.4009	0.0034059	1001.96769956254	14.701	0.14188	14.701	14.657	14.799	0	183	61	1.20177511391933	0.0397990191528599	1.20177511391933	484.662702327985	0	16.0505072448379						572	17	5	NaN	NaN	NaN	1.8561E-10	1	31648	128.68	125.39	1	153680			17363	3359	14634	15064	17363	17363		
SFNFYVFPK	9	Unmodified	_SFNFYVFPK_			0	0	0	O95453	O95453	O95453	PARN	Poly(A)-specific ribonuclease PARN	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.792392	1147.57023	-0.16658	-9.5749E-05	0.64338	0.00036981	0.4768	0.00027406	574.792551447247	15.047	0.11526	15.047	14.976	15.092	0	627	49	0.90440375274676	0.0324646425332216	0.90440375274676	366.598587068108	0	13.1594899359985						348	14	3	NaN	NaN	NaN	0.012571	1	7999	67.464	49.061	1	71699			17364	435	14635	15065	17364	17364		
SFPAAIEHTIQWAR	14	Unmodified	_SFPAAIEHTIQWAR_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.922989	1625.83143	1.812	0.0014748	1.3049	0.0010621	3.1169	0.002537	814.425507070987	13.655	0.11529	13.655	13.602	13.717	0	273	28	1.14198628764525	0.0179748912036308	1.14198628764525	461.28180996541	0	7.26058660952839						222	14	4	NaN	NaN	NaN	0.00014544	1	22362	82.437	66.15	1	47492			17365	3	14636	15066	17365	17365		
SFPGFQAFCETQGDR	15	Unmodified	_SFPGFQAFCETQGDR_			0	0	0	Q01780	Q01780	Q01780	EXOSC10	Exosome component 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.880661	1745.74677	2.3312	0.0020372	0.27493	0.00024026	2.6062	0.0022775	874.382492046116	13.567	0.079813	13.567	13.522	13.602	0	369	22	1.07793901817685	0.0140402733373235	1.07793901817685	435.158467134238	0	5.66798651926428						149	10	3	NaN	NaN	NaN	0.0037574	1	25764	62.454	57.625	1	30701			17366	1520	14637	15067	17366	17366		
SFPLHFDENSFFAGDK	16	Unmodified	_SFPLHFDENSFFAGDK_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.952931	1856.83696	-1.2406	-0.00076911	-0.83315	-0.00051651	-2.0737	-0.0012856	620.286643173845	15.322	0.13299	15.322	15.278	15.411	0	747	28	0.822982596624503	0.0183719873373771	0.822982596624503	498.113825408356	0	11.1197258976184						402	16	5	NaN	NaN	NaN	0.00011347	1	28619	86.729	80.352	1	151950			17367	2549	14638	15068	17367	17367		
SFQEILQIVSPVR	13	Unmodified	_SFQEILQIVSPVR_			0	0	0	Q7Z3U7	Q7Z3U7	Q7Z3U7	MON2	Protein MON2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.430116	1514.84568	1.1111	0.00084271	-2.0895	-0.0015847	-0.97833	-0.00074199	758.428160383696	18.408	0.15957	18.408	18.302	18.461	0	438	43	1.03173026378327	0.0281678436132822	1.03173026378327	417.00402788369	0	11.3848596439						378	19	3	NaN	NaN	NaN	0.00017206	1	18984	70.195	39.155	1	105020			17368	2133	14639	15069	17368	17368		
SFSHSFSALAK	11	Unmodified	_SFSHSFSALAK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.301113	1180.58767	1.6847	0.00099615	-5.6976	-0.003369	-4.013	-0.0023729	591.29749138542	6.7998	0.31034	6.7998	6.6225	6.9328	0	564	73	0.946969335010767	0.0486160685052341	0.946969335010767	383.725013585174	0	19.6999003641618						622	36	5	NaN	NaN	NaN	2.4798E-07	1	8896	129.28	113.7	1	225590			17369	1583	14640	15070	17369	17369		
SFSLGDIYFK	10	Unmodified	_SFSLGDIYFK_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.800414	1175.58628	0.17474	0.00010289	-0.03338	-1.9654E-05	0.14136	8.3234E-05	588.800293657449	15.659	0.133	15.659	15.624	15.757	0	585	43	0.932794566565362	0.0283750805572571	0.932794566565362	377.999750474492	0	11.4985375717079						291	16	4	NaN	NaN	NaN	0.00087177	1	8753	52.591	32.357	1	94082			17370	657	14641	15071	17370	17370		
SFTFVVFK	8	Unmodified	_SFTFVVFK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.770929	973.527304	-1.6568	-0.00080812	0.11232	5.4785E-05	-1.5444	-0.00075334	487.771064795217	14.861	0.10641	14.861	14.834	14.941	0	738	61	0.829104889055312	0.0407897772033428	0.829104889055312	336.78872255029	0	16.5691182608722						331	13	4	NaN	NaN	NaN	0.0035605	1	3716	78.178	56.25	1	93899			17371	1163	14642	15072	17371	17371		
SFTGNFVIDENILK	14	Unmodified	_SFTGNFVIDENILK_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.917038	1595.81952	0.94707	0.00075663	-0.12031	-9.6114E-05	0.82677	0.00066052	798.91700150787	15.987	0.12413	15.987	15.934	16.058	0	396	43	1.05987478976334	0.0281134808149035	1.05987478976334	428.182583153437	0	11.3576650308361						375	15	4	NaN	NaN	NaN	4.5108E-06	1	21453	128.57	114.77	1	114080			17372	2097	14643	15073	17372	17372		
SFTPDHVVYAR	11	Unmodified	_SFTPDHVVYAR_			0	0	0	Q6NZI2	Q6NZI2	Q6NZI2	PTRF	Polymerase I and transcript release factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.325119	1290.63569	1.6103	0.0010408	3.872	0.0025026	5.4823	0.0035433	646.328676471209	6.4008	0.14186	6.4008	6.3299	6.4717	0	522	22	0.975277694896658	0.0141355861424926	0.975277694896658	394.806453579585	0	5.72228880388525						132	17	2	NaN	NaN	NaN	0.034334	1	12093	36.24	26.726	1	39452			17373	2053	14644	15074	17373	17373		
SFTPVFLGSALK	12	Unmodified	_SFTPVFLGSALK_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.858264	1265.70197	0.57539	0.00036471	0.98119	0.00062193	1.5566	0.00098665	633.858907308882	15.225	0.11527	15.225	15.18	15.296	0	555	40	0.953040030838688	0.0263027118748081	0.953040030838688	385.88480802346	0	10.6499376667051						236	14	3	NaN	NaN	NaN	0.00065174	1	11388	48.785	31.39	1	69680			17374	2612	14645	15075	17374	17374		
SFVCFGDDGEPQLK	14	Unmodified	_SFVCFGDDGEPQLK_			0	0	0	Q08AD1	Q08AD1	Q08AD1	CAMSAP2	Calmodulin-regulated spectrin-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.861405	1597.70826	1.1387	0.00091083	3.9816	0.0031847	5.1204	0.0040956	800.366638718437	12.378	0.14187	12.378	12.307	12.449	0	399	28	1.0578662689527	0.0180766890154731	1.0578662689527	427.366791606619	0	7.30279130183595						185	17	3	NaN	NaN	NaN	0.0090211	1	21494	24.744	23.487	1	32550			17375	1580	14646	15076	17375	17375		
SFVEFILEPLYK	12	Unmodified	_SFVEFILEPLYK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.905411	1483.79627	0.67106	0.00049853	-0.56125	-0.00041696	0.10981	8.1575E-05	742.905249157255	19.915	0.053178	19.915	19.898	19.951	0	423	85	1.04178812298108	0.0563124017776579	1.04178812298108	421.148971701697	0	22.7646193881059						245	7	4	NaN	NaN	NaN	3.1625E-07	1	18032	116.13	105.34	1	71026			17376	1796	14647	15077	17376	17376		
SFVELSGAER	10	Unmodified	_SFVELSGAER_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.77747	1093.54039	0.21075	0.00011544	0.16295	8.9262E-05	0.3737	0.00020471	547.777808037474	7.9083	0.17732	7.9083	7.8197	7.997	0	681	43	0.867820189810857	0.0284854887682705	0.867820189810857	351.97578713125	0	11.5533176673564						258	21	3	NaN	NaN	NaN	0.0043715	1	6541	63.397	46.002	1	62735			17377	1593	14648	15078	17377	17377		
SFVLNLGK	8	Unmodified	_SFVLNLGK_			0	0	0	P09382	P09382	P09382	LGALS1	Galectin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.260728	876.506903	-2.9406	-0.0012917	-0.093633	-4.1129E-05	-3.0343	-0.0013328	439.26079239119	11.234	0.11527	11.234	11.181	11.296	0	777	22	0.802556497112065	0.0143092140004129	0.802556497112065	326.506669519088	0	5.82146406330605						168	14	3	NaN	NaN	NaN	0.058794	1	1964	40.203	23.655	1	40394			17378	600	14649	15079	17378	17378		
SFVPNMIGGASQADLAVLVISAR	23	Unmodified	_SFVPNMIGGASQADLAVLVISAR_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.75086	2315.23075	0.81218	0.00062762	0.95163	0.00073538	1.7638	0.001363	773.085567439552	19.729	0.062083	19.729	19.712	19.774	0	459	28	1.01763759082241	0.0181241570782431	1.01763759082241	615.025351315837	0	10.9536205962494						134	8	3	NaN	NaN	NaN	0.015556	1	35779	29.664	28.721	1	22137			17379	709;2224	14650	15080	17379	17379		
SFYPEEVSSMVLTK	14	Unmodified	_SFYPEEVSSMVLTK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.897457	1615.78036	2.2321	0.0018055	0.37511	0.00030343	2.6072	0.002109	808.898374374228	14.719	0.42563	14.719	14.515	14.941	0	405	127	1.05384839605172	0.0843173397877488	1.05384839605172	425.702700013423	0	34.0600406472814						3439	49	6	NaN	NaN	NaN	0.00014176	1	22074	77.157	70.467	1	3867600			17380	640	14651	15081	17380	17380		
SFYPEEVSSMVLTK	14	Oxidation (M)	_SFYPEEVSSM(Oxidation (M))VLTK_	SFYPEEVSSM(1)VLTK	SFYPEEVSSM(98)VLTK	0	1	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.894914	1631.77527	1.9453	0.0015891	1.0587	0.00086482	3.0039	0.0024539	816.895743898152	12.29	0.35472	12.29	12.086	12.44	0	387	73	1.06589869032374	0.0481613423106055	1.06589869032374	430.53454519193	0	19.4531823669205						1634	41	5	NaN	NaN	NaN	0.00039683	1	22542	97.594	76.444	1	737380			17381	640	14651	15082	17381	17381	192	
SFYSTEAVQAHMNDK	15	Unmodified	_SFYSTEAVQAHMNDK_			0	0	0	Q969S3	Q969S3	Q969S3	ZNF622	Zinc finger protein 622	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.388319	1726.76208	2.7144	0.0023463	-0.85914	-0.00074263	1.8553	0.0016037	864.387863731509	7.3319	0.062066	7.3319	7.3053	7.3674	0	261	28	1.14997238118939	0.0179650057750098	1.14997238118939	464.278181483304	0	7.25300915743037						133	8	3	NaN	NaN	NaN	2.3464E-08	1	25224	111.38	106.29	1	27894			17382	2462	14652	15083	17382	17382		
SFYTAIAQAFLSNEK	15	Unmodified	_SFYTAIAQAFLSNEK_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.42777	1688.84099	0.89775	0.00075898	1.0678	0.00090274	1.9655	0.0016617	845.429131074538	19.321	0.044312	19.321	19.295	19.339	0	330	31	1.10399226369747	0.0200257779077562	1.10399226369747	445.794319277555	0	8.08644980943279						86	6	2	NaN	NaN	NaN	0.00015663	1	24181	65.408	61.161	1	19484			17383	402	14653	15084	17383	17383		
SGAAAAAVTTETAQHAQGAK	20	Unmodified	_SGAAAAAVTTETAQHAQGAK_			0	0	0	P22830	P22830	P22830	FECH	Ferrochelatase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.961028	1839.9075	2.436	0.0022435	0.44043	0.00040562	2.8765	0.0026491	920.962180619963	4.1307	0.035472	4.1307	4.1307	4.1662	0	141	13	1.2295923935727	0.00793907667041216	1.2295923935727	496.179965552469	0	3.20367205379165						19	5	2	NaN	NaN	NaN	3.7701E-08	1	28226	106.97	98.165	1	2542.8			17384	812	14654	15085	17384	17384		
SGAAQGLAEVMAGLGVEK	18	Unmodified	_SGAAQGLAEVMAGLGVEK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.2943	1686.86107	-1.1353	-0.00063953	-4.6691	-0.0026301	-5.8045	-0.0032696	563.626088114469	17.078	0.10639	17.078	17.043	17.149	0	675	22	0.871889544407995	0.0142397763386857	0.871889544407995	528.108656031939	0	8.6251167853203						267	13	4	NaN	NaN	NaN	0.0012699	1	24104	81.908	73.533	1	77830			17385	2420	14655	15086	17385	17385		
SGAAQGLAEVMAGLGVEK	18	Unmodified	_SGAAQGLAEVMAGLGVEK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.437812	1686.86107	1.2754	0.001077	0.41113	0.00034717	1.6866	0.0014242	844.941062906494	17.087	0.24825	17.087	16.963	17.211	0	333	46	1.10198982404297	0.0300407400465015	1.10198982404297	444.989983408465	0	12.1306278181652						760	29	4	NaN	NaN	NaN	6.0969E-07	1	24106	117.03	85.234	1	204050			17386	2420	14655	15086	17386	17386		
SGAEVEAGDAAER	13	Unmodified	_SGAEVEAGDAAER_			0	0	0	Q8IY67	Q8IY67	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.286388	1260.55822	2.0322	0.0012829	-0.85684	-0.00054091	1.1753	0.00074197	631.285988319363	3.0222	0.18622	3.0222	2.9956	3.1818	0	624	31	0.906433495720521	0.0202988394656143	0.906433495720521	367.030045920221	0	8.21933877815201						234	22	3	NaN	NaN	NaN	2.0621E-05	1	11219	115.41	109.55	1	49126			17387	2219	14656	15087	17387	17387		
SGAGSSPETK	10	Unmodified	_SGAGSSPETK_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	1	920.431966	919.42469	3.1654	0.0029135	-2.0064	-0.0018468	1.159	0.0010668	920.429719483086	8.2632	0.1597	8.2632	8.2277	8.3874	0	273	277	1.14198628764525	0.183707248982227	1.14198628764525	232.135517207342	0	37.3428102583966						2250	19	3	NaN	NaN	NaN	0.062754	1	2681	45.489	8.9196	1	954310			17388	3318	14657	15088	17388	17388		
SGALDVLQMK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGALDVLQMK_			1	0	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.291899	1102.56925	0.3433	0.0001896	-0.8853	-0.00048894	-0.54201	-0.00029935	552.291653346376	15.943	0.28379	15.943	15.872	16.156	0	603	49	0.920633820089869	0.0324421500815294	0.920633820089869	373.358214452515	0	13.1567437162561						1085	33	5	NaN	NaN	NaN	2.9844E-08	1	6789	162.59	132.02	1	1455000			17389	592	14658	15089	17389	17389		
SGALDVLQMK	10	Acetyl (Protein N-term),Oxidation (M)	_(Acetyl (Protein N-term))SGALDVLQM(Oxidation (M))K_	SGALDVLQM(1)K	SGALDVLQM(43)K	1	1	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.289356	1118.56416	0.60166	0.0003371	-0.19786	-0.00011086	0.4038	0.00022624	560.289264609683	13.23	0.23059	13.23	13.15	13.38	0	612	49	0.914549654013882	0.0324511442563469	0.914549654013882	370.825333335768	0	13.1580678349962						685	27	4	NaN	NaN	NaN	0.038685	1	7226	43.272	28.509	1	278610			17390	592	14658	15090	17390	17390	162	
SGALQIESSEESDQGK	16	Unmodified	_SGALQIESSEESDQGK_			0	0	0	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.88412	1663.75369	2.4593	0.0020483	-0.79856	-0.00066511	1.6607	0.0013832	832.882588635506	5.4697	0.088632	5.4697	5.4342	5.5228	0	408	49	1.0518390438467	0.0321562992894993	1.0518390438467	424.786871928218	0	12.9863726469208						228	11	2	NaN	NaN	NaN	1.5338E-17	1	23440	158.02	147.77	1	72136			17391	627	14659	15091	17391	17391		
SGAVEETFR	9	Unmodified	_SGAVEETFR_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.243264	994.471974	0.15143	7.5448E-05	1.9456	0.00096936	2.097	0.0010448	498.243278211456	4.6539	0.2394	4.6539	4.5829	4.8223	0	732	37	0.833184998970724	0.0244772608396998	0.833184998970724	338.346785676007	0	9.93993235295477						462	28	3	NaN	NaN	NaN	0.046517	1	4148	34.781	28.019	1	104120			17392	2097	14660	15092	17392	17392		
SGAWDESGVFIYTTSNHIK	19	Unmodified	_SGAWDESGVFIYTTSNHIK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.672604	2110.99598	0.86371	0.00060863	0.42147	0.000297	1.2852	0.00090563	705.006947427545	13.123	0.12415	13.123	13.096	13.221	0	492	31	0.995464410099171	0.0201727650206149	0.995464410099171	601.971521716013	0	12.1987586230928						242	15	3	NaN	NaN	NaN	0.051503	1	33475	29.217	28.123	1	96557			17393	1241	14661	15093	17393	17393		
SGAYLIPLLER	11	Unmodified	_SGAYLIPLLER_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.355888	1230.69722	0.35434	0.0002184	-2.2931	-0.0014134	-1.9387	-0.001195	616.354589694698	15.97	0.17733	15.97	15.89	16.067	0	591	61	0.928742107665821	0.0405189944749071	0.928742107665821	376.162035444167	0	16.4111299681873						695	21	3	NaN	NaN	NaN	0.0084342	1	10340	43.272	36.581	1	295260			17394	847	14662	15094	17394	17394		
SGCIVNNLAEFTVDPK	16	Unmodified	_SGCIVNNLAEFTVDPK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.435269	1762.85598	2.6101	0.0023032	0.57992	0.00051174	3.19	0.002815	882.435813811452	14.551	0.19507	14.551	14.489	14.684	0	267	67	1.14597988355104	0.0439416658327225	1.14597988355104	462.590839039031	0	17.7376691843357						968	23	5	NaN	NaN	NaN	3.1505E-06	1	26222	91.032	86.786	1	316220			17395	326	14663	15095	17395	17395		
SGDAAIVDMVPGK	13	Unmodified	_SGDAAIVDMVPGK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.318645	1258.62274	1.7951	0.0011315	1.826	0.001151	3.6211	0.0022825	630.320409092715	10.285	0.42565	10.285	10.126	10.551	0	558	109	0.951016745717027	0.0728030967472719	0.951016745717027	385.088952983399	0	29.4796789085121						3039	49	6	NaN	NaN	NaN	0.0021091	1	11170	87.942	81.678	1	4644400			17396	1446	14664	15096	17396	17396		
SGDAAIVDMVPGK	13	Oxidation (M)	_SGDAAIVDM(Oxidation (M))VPGK_	SGDAAIVDM(1)VPGK	SGDAAIVDM(120)VPGK	0	1	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.316103	1274.61765	2.142	0.0013673	0.087759	5.6018E-05	2.2298	0.0014233	638.316562999782	6.9239	0.2039	6.9239	6.7821	6.986	0	552	109	0.955063035883597	0.0727930212774933	0.955063035883597	386.674729408703	0	29.4715853799908						1233	24	4	NaN	NaN	NaN	2.5994E-05	1	11615	115.41	109.15	1	1230900			17397	1446	14664	15097	17397	17397	517	
SGDGATEQAAEYVPEK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGDGATEQAAEYVPEK_			1	0	0	Q12996	Q12996	Q12996	CSTF3	Cleavage stimulation factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.381214	1692.74787	2.0144	0.001707	-1.5273	-0.0012942	0.48716	0.00041281	847.380024903897	8.9375	0.097729	8.9375	8.8931	8.9908	0	264	55	1.14797626962532	0.0359473204858849	1.14797626962532	463.546451987133	0	14.5153286793245						310	12	3	NaN	NaN	NaN	2.2275E-06	1	24272	92.747	87.596	1	60272			17398	1617	14665	15098	17398	17398		
SGDHLHNDSQIEADFR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGDHLHNDSQIEADFR_			1	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.281999	1881.82417	0.59683	0.00037498	0.93763	0.0005891	1.5345	0.00096408	628.28256547914	7.6245	0.1508	7.6245	7.5801	7.7309	0	678	67	0.869855008346864	0.0447877946260573	0.869855008346864	526.431765411905	0	27.1053423474677						737	18	4	NaN	NaN	NaN	3.0964E-12	1	29178	137.4	127.66	1	239090			17399	651	14666	15099	17399	17399		
SGDLYTQAAEAAMEAMK	17	Unmodified	_SGDLYTQAAEAAMEAMK_			0	0	0	O00418	O00418	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.902944	1785.79134	1.479	0.001322	1.1348	0.0010144	2.6137	0.0023364	894.406440554269	17.193	0.17735	17.193	17.14	17.317	0	339	52	1.09798411722691	0.034050864491993	1.09798411722691	443.172250646721	0	13.7437309125158						370	21	4	NaN	NaN	NaN	2.0713E-10	1	26841	113.34	90.383	1	60561			17400	76	14667	15100	17400	17400		
SGDSEVYQLGDVSQK	15	Unmodified	_SGDSEVYQLGDVSQK_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.378474	1610.74239	2.954	0.002382	0.67839	0.00054704	3.6324	0.0029291	806.37926605845	8.2632	0.39027	8.2632	8.2011	8.5914	0	411	73	1.04982941439551	0.048214507613157	1.04982941439551	424.090502985568	0	19.4767973772565						1368	45	5	NaN	NaN	NaN	5.954E-33	1	21911	249.45	219.1	1	1087900			17401	1546	14668	15101	17401	17401		
SGDTLLLLHHGDFSAEEVFHR	21	Unmodified	_SGDTLLLLHHGDFSAEEVFHR_			0	0	0	Q9BTV4	Q9BTV4	Q9BTV4	TMEM43	Transmembrane protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	595.797466	2379.16076	-0.14108	-8.4056E-05	0.72773	0.00043358	0.58665	0.00034952	596.299754071172	13.043	0.17734	13.043	12.937	13.114	0	630	43	0.902373728295776	0.0284104988036308	0.902373728295776	727.033463229423	0	22.8900539649894						381	21	5	NaN	NaN	NaN	1.3375E-06	1	36251	91.993	88.919	1	118300			17402	2738	14669	15102	17402	17402		
SGDVYSFSVLEPHGCGR	17	Unmodified	_SGDVYSFSVLEPHGCGR_			0	0	0	P57081	P57081	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.952825	1865.83665	1.126	0.00070145	1.193	0.00074321	2.319	0.0014447	623.288739310534	11.261	0.19509	11.261	11.146	11.341	0	579	31	0.936845902828289	0.0202538779292779	0.936845902828289	567.009822821627	0	12.2583102530103						344	23	4	NaN	NaN	NaN	0.013445	1	28824	39.166	38.647	1	72449			17403	1292	14670	15103	17403	17403		
SGEDEQQEQTIAEDLVVTK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGEDEQQEQTIAEDLVVTK_			1	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.00961	2160.007	-0.033584	-2.4215E-05	1.7898	0.0012905	1.7562	0.0012662	721.345352870478	14.799	0.11529	14.799	14.755	14.87	0	519	31	0.97729762293174	0.0201978857694813	0.97729762293174	590.89823231117	0	12.2121395955171						250	14	4	NaN	NaN	NaN	0.0014891	1	34176	57.279	56.844	1	49768			17404	3319	14671	15104	17404	17404		
SGEDEQQEQTIAEDLVVTK	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGEDEQQEQTIAEDLVVTK_			1	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.01078	2160.007	0.68423	0.00073966	1.9941	0.0021556	2.6783	0.0028953	1081.5126613913	14.79	0.15963	14.79	14.737	14.897	0	138	79	1.23157729878518	0.0516040383789338	1.23157729878518	496.429472604136	0	20.8007776547739						752	19	4	NaN	NaN	NaN	2.0621E-45	1	34177	198.44	184.05	1	418250			17405	3319	14671	15104	17405	17405		
SGEEDEEILFK	11	Unmodified	_SGEEDEEILFK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.303715	1294.59288	1.6685	0.0010817	2.3059	0.0014949	3.9745	0.0025767	648.305086524529	10.108	0.15072	10.108	10.073	10.223	0	516	34	0.979317271586824	0.0222161383936255	0.979317271586824	396.428906581164	0	8.99312174651044						317	18	3	NaN	NaN	NaN	0.00031993	1	12197	85.716	75.628	1	92126			17406	1151	14672	15105	17406	17406		
SGEEDFESLASQFSDCSSAK	20	Unmodified	_SGEEDFESLASQFSDCSSAK_			0	0	0	Q13526	Q13526	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.94986	2179.88517	0.90571	0.00098808	0.57605	0.00062844	1.4818	0.0016165	1091.45237479155	14.631	0.10641	14.631	14.595	14.701	0	126	49	1.23951419873743	0.0317519617510027	1.23951419873743	499.599603942971	0	12.7979716015934						437	13	5	NaN	NaN	NaN	3.2059E-07	1	34443	90.376	84.988	1	116440			17407	1678	14673	15106	17407	17407		
SGEHDFGAAFDGDGDR	16	Unmodified	_SGEHDFGAAFDGDGDR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.55724	1651.64989	-0.77832	-0.00042929	1.0875	0.00059982	0.30919	0.00017054	551.557738123018	6.8974	0.12411	6.8974	6.8619	6.986	0	768	34	0.808687310729125	0.0224765256052036	0.808687310729125	489.911645187151	0	13.6165258082364						323	15	4	NaN	NaN	NaN	0.00086855	1	23088	62.705	62.705	1	121450			17408	991	14675	15107	17408	17408		
SGEHDFGAAFDGDGDR	16	Unmodified	_SGEHDFGAAFDGDGDR_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.832222	1651.64989	2.1524	0.0017797	2.6542	0.0021945	4.8065	0.0039742	827.335877248554	6.9062	0.035479	6.9062	6.8707	6.9062	0	426	4	1.03977710643793	0.00201101654314684	1.03977710643793	419.941042919985	0	0.812201364340069						16	5	2	NaN	NaN	NaN	0.00089538	1	23090	61.042	60.808	1	6101.2			17409	991	14675	15107	17409	17409		
SGELQGGPDDNLIEGGGTK	19	Unmodified	_SGELQGGPDDNLIEGGGTK_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.437051	1842.85955	2.5638	0.0023649	-3.1824	-0.0029355	-0.61859	-0.00057061	922.43531754959	8.4761	0.12415	8.4761	8.4229	8.547	0	324	43	1.1079963157843	0.0280206529000475	1.1079963157843	447.106701513498	0	11.3070968864429						300	15	3	NaN	NaN	NaN	0.046244	1	28299	30.959	30.152	1	54055			17410	2471	14676	15108	17410	17410		
SGETEDTFIADLVVGLCTGQIK	22	Unmodified	_SGETEDTFIADLVVGLCTGQIK_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1177.08322	2352.15189	0.78489	0.00092388	-0.25754	-0.00030315	0.52734	0.00062073	1177.58451569698	20.075	0.088688	20.075	20.057	20.146	0	63	49	1.28111162701928	0.0316564023349579	1.28111162701928	516.126357168928	0	12.7535362833529						346	11	6	NaN	NaN	NaN	2.0213E-29	1	36059	173.26	168.89	1	293490			17411	544;596;688	14677	15109	17411	17411		
SGETEDTFIADLVVGLCTGQIK	22	Unmodified	_SGETEDTFIADLVVGLCTGQIK_			0	0	0	P06733;P09104;P13929	P06733;P09104;P13929	P06733	ENO1;ENO2;ENO3	Alpha-enolase;Gamma-enolase;Beta-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.057907	2352.15189	1.3029	0.0010229	-0.16753	-0.00013152	1.1354	0.00089133	785.392724251992	20.075	0.14186	20.075	20.066	20.208	0	405	49	1.05384839605172	0.0321607366082963	1.05384839605172	636.850319018557	0	19.4350301671475						348	17	5	NaN	NaN	NaN	4.6047E-12	1	36060	196.42	188.42	1	359150			17412	544;596;688	14677	15109	17412	17412		
SGEVLVNVK	9	Unmodified	_SGEVLVNVK_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.7742	943.533846	-0.22619	-0.00010694	-1.989	-0.00094037	-2.2152	-0.0010473	472.773364751213	5.984	0.19515	5.984	5.9219	6.117	0	750	31	0.820941264895493	0.0204175783261862	0.820941264895493	333.620211389571	0	8.2974471969228						204	23	2	NaN	NaN	NaN	0.017696	1	3129	62.88	47.382	1	64570			17413	1655	14678	15110	17413	17413		
SGFEDMFAK	9	Unmodified	_SGFEDMFAK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.228768	1030.44298	-1.0025	-0.00051751	0.032387	1.6719E-05	-0.9701	-0.00050079	516.228745235232	11.784	0.12415	11.784	11.731	11.855	0	717	25	0.84338031290707	0.0163068367696065	0.84338031290707	342.323819301327	0	6.61886287629062						185	15	3	NaN	NaN	NaN	0.048758	1	4998	29.31	17.661	1	41724			17414	1151	14679	15111	17414	17414		
SGFEGMFIR	9	Unmodified	_SGFEGMFIR_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.252577	1042.4906	0.40121	0.00020953	-1.3363	-0.00069787	-0.93506	-0.00048834	522.251829372031	12.777	0.13303	12.777	12.733	12.866	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	349.712103493752	0	8.26198289144054						272	16	4	NaN	NaN	NaN	0.0050771	1	5275	79.809	56.234	1	84092			17415	1151	14680	15112	17415	17415		
SGFEGMFTK	9	Unmodified	_SGFEGMFTK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.23131	1002.44807	-0.39054	-0.00019614	-0.40528	-0.00020355	-0.79582	-0.00039969	502.231162592356	10.161	0.18621	10.161	10.117	10.303	0	720	34	0.841341816837976	0.022426576308619	0.841341816837976	341.622092547057	0	9.10618463731026						382	22	4	NaN	NaN	NaN	0.0010336	1	4347	106.93	80.703	1	111760			17416	1151	14681	15113	17416	17416		
SGFEPASLK	9	Unmodified	_SGFEPASLK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.245275	934.475997	-1.1128	-0.00052106	0.43759	0.0002049	-0.67521	-0.00031616	468.245753889201	6.5427	0.22169	6.5427	6.4717	6.6934	0	774	49	0.804600385996946	0.0326908593964281	0.804600385996946	327.024969321446	0	13.2870024390582						343	26	2	NaN	NaN	NaN	0.012358	1	2961	40.502	31.739	1	98114			17417	972	14682	15114	17417	17417		
SGGELDIVVTSNK	13	Unmodified	_SGGELDIVVTSNK_			0	0	0	Q96M27	Q96M27	Q96M27	PRRC1	Protein PRRC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.846081	1317.67761	1.0956	0.00072295	0.77174	0.00050923	1.8674	0.0012322	659.847638838076	8.8221	0.24854	8.8221	8.7334	8.9819	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	395.538174462877	0	6.53969422120218						283	29	2	NaN	NaN	NaN	0.0002284	1	12910	74.524	57.872	1	79368			17418	2583	14683	15115	17418	17418		
SGGGGDIHQGFQSLLTEVNK	20	Unmodified	_SGGGGDIHQGFQSLLTEVNK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.007987	2043.00213	-0.17855	-0.00012178	-0.89557	-0.00061078	-1.0741	-0.00073256	682.341773495397	13.043	0.16841	13.043	12.99	13.159	0	681	43	0.867820189810857	0.0284933997158956	0.867820189810857	524.897271864954	0	17.2341090385222						670	20	5	NaN	NaN	NaN	2.3561E-37	1	32399	246.8	237.65	1	425740			17419	961	14684	15116	17419	17419		
SGGGGDIHQGFQSLLTEVNK	20	Unmodified	_SGGGGDIHQGFQSLLTEVNK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.007987	2043.00213	0.507	0.00034578	-0.16814	-0.00011467	0.33887	0.00023111	682.342309352821	13.043	0.097523	13.043	13.008	13.105	0	585	94	0.932794566565362	0.0628349463616389	0.932794566565362	564.196738614729	0	38.0054441556226						667	12	4	NaN	NaN	NaN	1.4469E-05	1	32400	88.421	82.034	1	162620			17420	961	14684	15116	17420	17420		
SGGGGDIHQGFQSLLTEVNK	20	Unmodified	_SGGGGDIHQGFQSLLTEVNK_			0	0	0	P35237	P35237	P35237	SERPINB6	Serpin B6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.50834	2043.00213	1.6456	0.0016826	-0.37945	-0.00038799	1.2661	0.0012946	1023.00934665451	13.043	0.19509	13.043	12.981	13.176	0	180	88	1.203763835057	0.0577046463767035	1.203763835057	485.395830443499	0	23.2683471065918						1026	23	5	NaN	NaN	NaN	0.00074633	1	32401	45.17	38.314	1	309140			17421	961	14684	15116	17421	17421		
SGGGGLMEEMNAMLAR	16	Unmodified	_SGGGGLMEEMNAMLAR_			0	0	0	P50552	P50552	P50552	VASP	Vasodilator-stimulated phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.368017	1622.72148	0.5941	0.00048263	6.5261	0.0053016	7.1202	0.0057842	813.377369358901	16.759	0.337	16.759	16.617	16.954	0	396	34	1.05987478976334	0.0220876383289843	1.05987478976334	428.121476490668	0	8.92199005479512						475	39	4	NaN	NaN	NaN	2.3247E-06	1	22258	95.138	93.881	1	76077			17422	1166	14685	15117	17422	17422		
SGGIETIANEYSDR	14	Unmodified	_SGGIETIANEYSDR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.352259	1510.68997	1.2334	0.00093289	-0.23917	-0.00018089	0.99424	0.00075199	756.352864617801	9.4076	0.25715	9.4076	9.3278	9.5849	0	465	52	1.01360860968299	0.0342487168428018	1.01360860968299	409.689827397723	0	13.8429673523682						546	30	3	NaN	NaN	NaN	2.597E-12	1	18823	172.51	147.69	1	296620			17423	450	14686	15118	17423	17423		
SGGLSVEVCGPALSQQWK	18	Unmodified	_SGGLSVEVCGPALSQQWK_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.97255	1901.93055	2.0293	0.0019318	-1.3397	-0.0012753	0.68964	0.00065651	951.97200835085	13.052	0.20396	13.052	12.919	13.123	0	270	55	1.14398322290989	0.0359374340321577	1.14398322290989	461.521268488445	0	14.4983683401864						526	24	4	NaN	NaN	NaN	3.1233E-10	1	29644	115.35	106.19	1	145350			17424	1586	14687	15119	17424	17424		
SGGMSNELNNIISR	14	Unmodified	_SGGMSNELNNIISR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.364647	1490.71474	0.99872	0.00074541	6.4733	0.0048315	7.472	0.0055769	746.871128710576	11.571	0.088732	11.571	11.518	11.607	0	426	16	1.03977710643793	0.0100536953366968	1.03977710643793	420.317953365883	0	4.06409087247664						81	11	3	NaN	NaN	NaN	0.021093	1	18250	54.199	44.457	1	48916			17425	1235	14688	15120	17425	17425		
SGGNEVSIEER	11	Unmodified	_SGGNEVSIEER_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.778199	1175.54184	2.3653	0.0013927	-3.7928	-0.0022331	-1.4275	-0.00084048	588.776423945678	3.9268	0.13301	3.9268	3.9002	4.0332	0	648	34	0.890187667287968	0.0223395647977513	0.890187667287968	360.734174890329	0	9.05274783156364						198	16	3	NaN	NaN	NaN	0.0014241	1	8744	92.428	81.068	1	75185			17426	1807	14689	15121	17426	17426		
SGGNLVLVGLGSEMTTVPLLHAAIR	25	Unmodified	_SGGNLVLVGLGSEMTTVPLLHAAIR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	835.800103	2504.37848	0.94808	0.00079241	1.1756	0.00098258	2.1237	0.001775	836.1351711819	19.312	0.062083	19.312	19.268	19.33	0	321	28	1.10999792833052	0.0180169954366338	1.10999792833052	670.542606378403	0	10.8839510154389						77	8	2	NaN	NaN	NaN	0.0075456	1	36847	22.906	22.573	1	17312			17427	1508	14690	15122	17427	17427		
SGGTEGLLAEK	11	Unmodified	_SGGTEGLLAEK_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.277303	1060.54005	0.37019	0.00019667	0.17949	9.5358E-05	0.54967	0.00029203	531.277454529131	5.5228	0.14186	5.5228	5.4785	5.6203	0	702	31	0.853568545818287	0.0203693921717962	0.853568545818287	346.329529756583	0	8.26473989329435						190	17	2	NaN	NaN	NaN	1.6802E-05	1	5742	85.622	55.061	1	57178			17428	3212	14691	15123	17428	17428		
SGHELGMTPLQELSLR	16	Unmodified	_SGHELGMTPLQELSLR_			0	0	0	Q9Y6D5	Q9Y6D5	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.973449	1766.89852	-1.0967	-0.00064704	-0.31017	-0.00018299	-1.4069	-0.00083004	589.973443613308	13.088	0.079784	13.088	13.061	13.141	0	720	22	0.841341816837976	0.0142734399244295	0.841341816837976	509.417769975792	0	8.64231848538515						129	10	3	NaN	NaN	NaN	0.00014192	1	26319	61.194	59.484	1	28544			17429	3459	14692	15124	17429	17429		
SGIGSCAFATVEDYLH	16	Unmodified	_SGIGSCAFATVEDYLH_			0	0	0	Q96S59	Q96S59	Q96S59	RANBP9	Ran-binding protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.890694	1725.76684	1.1408	0.00098557	2.3263	0.0020097	3.4672	0.0029952	864.394237502227	17.122	0.097532	17.122	17.078	17.176	0	315	34	1.11400032671325	0.0220086485817799	1.11400032671325	449.757243299035	0	8.88558905910133						250	12	4	NaN	NaN	NaN	1.1904E-08	1	25202	135.28	132.57	1	53168			17430	2618	14693	15125	17430	17430		
SGILPILVHCLER	13	Unmodified	_SGILPILVHCLER_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.953549	1505.83882	-0.96215	-0.00048392	-1.0939	-0.00055019	-2.0561	-0.0010341	502.953158737529	15.943	0.23943	15.943	15.819	16.058	0	690	28	0.86171403876517	0.0183235429829339	0.86171403876517	522.45558780221	0	11.109529367174						564	28	4	NaN	NaN	NaN	0.057199	1	18687	8.3744	7.3223	1	171500			17431	96	14694	15126	17431	17431		
SGILPILVHCLER	13	Unmodified	_SGILPILVHCLER_			0	0	0	O00629	O00629	O00629	KPNA4	Importin subunit alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.926686	1505.83882	1.1857	0.0008939	1.3046	0.00098357	2.4903	0.0018775	753.927553623946	15.952	0.16847	15.952	15.854	16.023	0	330	34	1.10399226369747	0.0220268393331327	1.10399226369747	446.23498443631	0	8.90327462448147						314	20	3	NaN	NaN	NaN	3.3224E-05	1	18688	82.437	76.941	1	75533			17432	96	14694	15126	17432	17432		
SGILPILVK	9	Unmodified	_SGILPILVK_			0	0	0	O00505	O00505	O00505	KPNA3	Importin subunit alpha-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.315503	938.616454	-1.6647	-0.00078292	-1.789	-0.00084139	-3.4537	-0.0016243	470.31486002718	14.081	0.088671	14.081	14.036	14.125	0	756	28	0.816857749704129	0.0183770979161022	0.816857749704129	331.985687765072	0	7.46878326491122						146	11	2	NaN	NaN	NaN	0.04731	1	3052	33.396	25.392	1	33263			17433	87	14695	15127	17433	17433		
SGLAIVSQHDLDQLQADAINAFGESLQK	28	Unmodified	_SGLAIVSQHDLDQLQADAINAFGESLQK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	990.171869	2967.49378	1.8503	0.0018321	-0.85123	-0.00084286	0.99902	0.0009892	990.505392036277	19.729	0.044346	19.729	19.712	19.756	0	354	34	1.08796502040166	0.0220480903949298	1.08796502040166	656.666370113466	0	13.3076332566529						181	6	5	NaN	NaN	NaN	3.9661E-15	1	38169	89.913	88.369	1	43473			17434	2422	14696	15128	17434	17434		
SGLGDDLVQALGLSK	15	Unmodified	_SGLGDDLVQALGLSK_			0	0	0	Q9Y613	Q9Y613	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.901388	1471.78822	0.39612	0.0002919	-0.32647	-0.00024057	0.069658	5.1331E-05	736.900973839239	18.302	0.079824	18.302	18.257	18.337	0	444	25	1.02770517576159	0.0161048002118316	1.02770517576159	415.487175189396	0	6.51095090772969						165	10	4	NaN	NaN	NaN	3.4108E-06	1	17651	88.42	77.633	1	39898			17435	3449	14697	15129	17435	17435		
SGLGELILPENEPGSSIMPGK	21	Unmodified	_SGLGELILPENEPGSSIMPGK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1063.04591	2124.07727	0.73144	0.00077755	0.056334	5.9886E-05	0.78777	0.00083744	1063.54778534875	15.881	0.28377	15.881	15.757	16.041	0	132	109	1.23554629282893	0.0714811984013932	1.23554629282893	498.083143469351	0	28.8160631498507						2499	33	6	NaN	NaN	NaN	2.839E-11	1	33672	142.73	130.36	1	1159000			17436	571	14698	15130	17436	17436		
SGLGELILPENEPGSSIMPGK	21	Oxidation (M)	_SGLGELILPENEPGSSIM(Oxidation (M))PGK_	SGLGELILPENEPGSSIM(1)PGK	SGLGELILPENEPGSSIM(65)PGK	0	1	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.04337	2140.07219	1.6335	0.0017496	-2.4034	-0.0025742	-0.7699	-0.0008246	1071.54290963781	14.471	0.11526	14.471	14.365	14.48	0	123	67	1.24149774378079	0.0436649457000144	1.24149774378079	500.458046771598	0	17.6017020948171						545	14	3	NaN	NaN	NaN	5.5779E-05	1	33883	65.212	61.362	1	148320			17437	571	14698	15131	17437	17437	148	
SGLLVLTTPLASLAPR	16	Unmodified	_SGLLVLTTPLASLAPR_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.987798	1607.96104	1.5591	0.0012551	-0.28895	-0.0002326	1.2702	0.0010225	804.987427943921	18.878	0.13299	18.878	18.807	18.94	0	333	55	1.10198982404297	0.036061308536395	1.10198982404297	445.167861000763	0	14.5675896780418						561	16	4	NaN	NaN	NaN	2.1502E-06	1	21860	121.96	94.375	1	143430			17438	1623	14699	15132	17438	17438		
SGLQVSQDFPFLHPSETSVLNR	22	Unmodified	_SGLQVSQDFPFLHPSETSVLNR_			0	0	0	Q9UGJ1	Q9UGJ1	Q9UGJ1	TUBGCP4	Gamma-tubulin complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.083556	2457.22884	-0.13298	-0.00010905	-0.53574	-0.00043935	-0.66871	-0.0005484	820.417657210488	15.89	0.088689	15.89	15.845	15.934	0	516	34	0.979317271586824	0.0222161383936255	0.979317271586824	591.661899302575	0	13.4220471940038						175	11	3	NaN	NaN	NaN	0.00023189	1	36607	48.476	42.574	1	35512			17439	3204	14700	15133	17439	17439		
SGLSSPIYIDLR	12	Unmodified	_SGLSSPIYIDLR_			0	0	0	P11172	P11172	P11172	UMPS	Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.861534	1319.70852	0.56806	0.00037541	0.11763	7.7739E-05	0.68569	0.00045315	661.363323593169	14.036	0.15075	14.036	14.001	14.152	0	507	49	0.985374541851584	0.0322987503458569	0.985374541851584	398.800750920804	0	13.0719491367491						225	18	2	NaN	NaN	NaN	0.00043237	1	12983	71.066	60.278	1	77113			17440	643	14701	15134	17440	17440		
SGMSHEEDQLIPNLYR	16	Unmodified	_SGMSHEEDQLIPNLYR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.300114	1887.87851	0.85352	0.00053797	-0.71451	-0.00045036	0.13901	8.7615E-05	630.634037835763	11.385	0.20401	11.385	11.27	11.474	0	624	85	0.906433495720521	0.0568604487346249	0.906433495720521	548.556022593843	0	34.4108439814145						1356	24	5	NaN	NaN	NaN	0.070095	1	29321	27.378	21.35	1	306220			17441	2064	14702	15135	17441	17441		
SGMVQTEAQYR	11	Unmodified	_SGMVQTEAQYR_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.298244	1268.58194	1.6593	0.0010541	-2.8421	-0.0018056	-1.1828	-0.00075144	635.296736513718	4.6007	0.088691	4.6007	4.5652	4.6539	0	585	28	0.932794566565362	0.0182348035691394	0.932794566565362	377.678204314424	0	7.38307030815696						116	11	2	NaN	NaN	NaN	0.012996	1	11457	48.157	28.902	1	27032			17442	1556	14703	15136	17442	17442		
SGMYVVIEVK	10	Unmodified	_SGMYVVIEVK_			0	0	0	O75223	O75223	O75223	GGCT	Gamma-glutamylcyclotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.804642	1123.59473	2.1461	0.0012079	-6.389	-0.0035958	-4.2429	-0.0023879	562.801118961808	9.78	0.2394	9.78	9.6824	9.9218	0	546	61	0.959108205975751	0.0404685229802539	0.959108205975751	388.871463814507	0	16.4080065958066						733	28	4	NaN	NaN	NaN	0.011176	1	7362	60.589	15.822	1	519750			17443	314	14704	15137	17443	17443		
SGNIVAGIANESK	13	Unmodified	_SGNIVAGIANESK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.333141	1258.65173	1.7994	0.0011342	-0.5002	-0.00031529	1.2992	0.00081894	630.33296909428	7.3496	0.13299	7.3496	7.3142	7.4472	0	576	37	0.938871150116794	0.024301288635538	0.938871150116794	380.170831460462	0	9.8401586894899						292	16	4	NaN	NaN	NaN	3.6754E-05	1	11174	124.06	80.326	1	121670			17444	1155	14705	15138	17444	17444		
SGNVAELALK	10	Unmodified	_SGNVAELALK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.284931	1000.55531	0.24705	0.00012384	-0.86079	-0.0004315	-0.61374	-0.00030766	501.28448578055	7.6422	0.12421	7.6422	7.5801	7.7044	0	717	46	0.84338031290707	0.030573200685858	0.84338031290707	342.458585051103	0	12.4143934677261						360	15	3	NaN	NaN	NaN	0.0010791	1	4302	55.235	45.156	1	204880			17445	1126	14706	15139	17445	17445		
SGPFTHPDFEPSTESLQFLLDTCK	24	Unmodified	_SGPFTHPDFEPSTESLQFLLDTCK_			0	0	0	Q8TBC4	Q8TBC4	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.430292	2752.26905	1.0989	0.0010093	0.97249	0.00089316	2.0714	0.0019025	918.765141324927	17.663	0.12413	17.663	17.592	17.716	0	438	25	1.03173026378327	0.0161003532377459	1.03173026378327	622.951760265769	0	9.72128446981503						276	15	4	NaN	NaN	NaN	1.9093E-09	1	37762	80.026	79.329	1	48991			17446	2336	14707	15140	17446	17446		
SGPLFNFDVHDDVR	14	Unmodified	_SGPLFNFDVHDDVR_			0	0	0	Q14320	Q14320	Q14320	FAM50A	Protein FAM50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.926716	1616.75832	0.031754	1.7145E-05	-0.2676	-0.00014448	-0.23584	-0.00012734	540.261194178096	12.653	0.21282	12.653	12.573	12.786	0	690	37	0.86171403876517	0.024433089026624	0.86171403876517	522.129421044348	0	14.8044873982525						455	25	5	NaN	NaN	NaN	0.00084474	1	22096	55.578	49.712	1	161190			17447	1747	14708	15141	17447	17447		
SGPLFNFDVHDDVR	14	Unmodified	_SGPLFNFDVHDDVR_			0	0	0	Q14320	Q14320	Q14320	FAM50A	Protein FAM50A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.386436	1616.75832	2.1621	0.00175	0.51421	0.00041619	2.6763	0.0021662	809.38689276021	12.653	0.14189	12.653	12.6	12.742	0	372	43	1.07593298845566	0.0280786163643747	1.07593298845566	434.621549390077	0	11.3423158133022						337	17	3	NaN	NaN	NaN	6.9104E-05	1	22097	72.846	65.706	1	95206			17448	1747	14708	15141	17448	17448		
SGPNIYELR	9	Unmodified	_SGPNIYELR_			0	0	0	O75323	O75323	O75323	GBAS	Protein NipSnap homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.774731	1047.53491	0.43414	0.00022783	-1.8122	-0.00095101	-1.3781	-0.00072318	524.774080823038	8.2188	0.23951	8.2188	8.1479	8.3874	0	702	34	0.853568545818287	0.0224047758340703	0.853568545818287	346.38465124233	0	9.09202957567646						379	28	3	NaN	NaN	NaN	0.0014349	1	5407	86.205	73.378	1	145550			17449	318	14709	15142	17449	17449		
SGPNTQNEDIEK	12	Unmodified	_SGPNTQNEDIEK_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.30732	1330.60009	2.326	0.0015498	-0.55423	-0.00036929	1.7717	0.0011805	666.306879392259	2.703	0.088708	2.703	2.6853	2.774	0	552	22	0.955063035883597	0.0141610361284813	0.955063035883597	386.500296732527	0	5.73076798081121						77	11	2	NaN	NaN	NaN	0.0075478	1	13302	55.754	37.418	1	14034			17450	1768	14710	15143	17450	17450		
SGPPGEEAQVASQFIADVIENSQIIQK	27	Unmodified	_SGPPGEEAQVASQFIADVIENSQIIQK_			0	0	0	Q96B26	Q96B26	Q96B26	EXOSC8	Exosome complex component RRP43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	952.485565	2854.43487	1.3289	0.0012658	-0.93458	-0.00089018	0.39432	0.00037558	952.818982264842	20.128	0.03547	20.128	20.119	20.155	0	318	31	1.11199926528787	0.0200119941897818	1.11199926528787	671.296828844029	0	12.0809326568826						107	5	4	NaN	NaN	NaN	0.0035477	1	38008	13.153	12.455	1	24144			17451	2479	14711	15144	17451	17451		
SGQPVTADDLGVTGALTVLMK	21	Unmodified	_SGQPVTADDLGVTGALTVLMK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.04845	2072.08236	0.81781	0.00084811	-0.24614	-0.00025526	0.57167	0.00059285	1037.55026992207	18.612	0.070937	18.612	18.585	18.656	0	159	40	1.21767724410157	0.0258321022391843	1.21767724410157	490.959642208048	0	10.4153376720028						190	9	3	NaN	NaN	NaN	0.001386	1	32902	53.782	52.307	1	37883			17452	2083	14712	15145	17452	17452		
SGQSALYDALFSSQSPK	17	Unmodified	_SGQSALYDALFSSQSPK_			0	0	0	P49792;A6NKT7;Q7Z3J3	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.436323	1784.85809	1.5897	0.0014203	-0.2129	-0.00019021	1.3768	0.00123	893.436406028928	14.506	0.1064	14.506	14.462	14.568	0	126	34	1.23951419873743	0.0218249814515028	1.23951419873743	500.299145757187	0	8.80911214044613						311	13	4	NaN	NaN	NaN	7.62E-07	1	26827	113.86	105.49	1	97669			17453	1151;19	14713	15146	17453	17453		
SGQVYSFGCNDEGALGR	17	Unmodified	_SGQVYSFGCNDEGALGR_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.899582	1815.78461	2.0702	0.0018816	1.8635	0.0016937	3.9337	0.0035753	908.902039261298	9.4696	0.20394	9.4696	9.4342	9.6381	0	318	58	1.11199926528787	0.0380306546027454	1.11199926528787	448.771963979409	0	15.3481140593004						845	24	4	NaN	NaN	NaN	1.5914E-06	1	27616	96.27	77.459	1	569010			17454	758	14714	15147	17454	17454		
SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK	39	Unmodified	_SGSAADTQAVADAVTYQLGFHSIELNEPPLVHTAASLFK_			0	0	0	P28072	P28072	P28072	PSMB6	Proteasome subunit beta type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	1014.76418	4055.02762	1.43	0.0014512	0.32751	0.00033235	1.7576	0.0017835	1015.26531413649	19.898	0.062061	19.898	19.853	19.915	0	288	37	1.13199748998575	0.0239780653182871	1.13199748998575	909.848990478722	0	19.2724972594691						209	8	6	NaN	NaN	NaN	1.1501E-05	1	38771	45.897	45.588	1	50490			17455	874	14715	15148	17455	17455		
SGSGVNPYCGLIEEAYGLDK	20	Unmodified	_SGSGVNPYCGLIEEAYGLDK_			0	0	0	O60684	O60684	O60684	KPNA6	Importin subunit alpha-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.99642	2127.97828	0.98668	0.0010508	-2.2657	-0.0024129	-1.279	-0.0013621	1065.49925215051	16.546	0.266	16.546	16.457	16.723	0	150	61	1.22363604450103	0.0397171819011048	1.22363604450103	493.275923448882	0	16.0109124499056						1550	31	7	NaN	NaN	NaN	2.0745E-06	1	33713	63.025	58.471	1	393880			17456	274	14716	15149	17456	17456		
SGSLSLTQFADMISLK	16	Unmodified	_SGSLSLTQFADMISLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.442563	1696.87057	0.71492	0.00060728	2.1658	0.0018397	2.8807	0.002447	849.444835024579	19.233	0.1064	19.233	19.206	19.312	0	312	58	1.11600111266355	0.0380306546027454	1.11600111266355	450.626156335152	0	15.3562639965857						451	13	5	NaN	NaN	NaN	4.9295E-12	1	24413	151.52	115.01	1	176570			17457	718	14717	15150	17457	17457		
SGSMATAEASGSDGK	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGSMATAEASGSDGK_			1	0	0	O43169	O43169	O43169	CYB5B	Cytochrome b5 type B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.296095	1396.57764	2.5285	0.0017682	-0.87406	-0.00061123	1.6545	0.001157	699.29572436393	4.7869	0.24828	4.7869	4.7248	4.9731	0	447	37	1.02569221487577	0.0241572026210712	1.02569221487577	414.881288668551	0	9.77132438825345						521	29	4	NaN	NaN	NaN	2.5941E-06	1	15330	112.7	102.61	1	194730			17458	187	14718	15151	17458	17458		
SGSMDPSGAHPSVR	14	Unmodified	_SGSMDPSGAHPSVR_			0	0	0	Q07666	Q07666	Q07666	KHDRBS1	KH domain-containing, RNA-binding, signal transduction-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.21398	1383.62011	-0.10807	-4.9952E-05	1.8963	0.00087647	1.7882	0.00082652	462.214921483643	3.2794	0.17735	3.2794	3.1996	3.3769	0	768	40	0.808687310729125	0.0265668641501883	0.808687310729125	490.699267220005	0	16.1203726061647						459	21	4	NaN	NaN	NaN	0.010979	1	14931	39.293	37.493	1	148560			17459	1569	14719	15152	17459	17459		
SGTFCLADTCLLLMDK	16	Unmodified	_SGTFCLADTCLLLMDK_			0	0	0	P18031	P18031	P18031	PTPN1	Tyrosine-protein phosphatase non-receptor type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.93319	1843.85183	1.1297	0.0010427	0.9556	0.00088195	2.0853	0.0019246	923.435888350386	17.601	0.070923	17.601	17.566	17.637	0	228	34	1.17191150690002	0.0219240556368867	1.17191150690002	472.896306717396	0	8.84691794380927						199	9	4	NaN	NaN	NaN	1.9796E-08	1	28320	96.313	88.737	1	38598			17460	748	14720	15153	17460	17460		
SGTGIHIDPLGTSAWNALVQGHK	23	Unmodified	_SGTGIHIDPLGTSAWNALVQGHK_			0	0	0	Q6NYC1	Q6NYC1	Q6NYC1	JMJD6	Bifunctional arginine demethylase and lysyl-hydroxylase JMJD6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	590.559287	2358.20804	-0.28659	-0.00016925	2.8654	0.0016922	2.5788	0.0015229	590.81221116427	14.799	0.070967	14.799	14.755	14.826	0	573	31	0.940896116921038	0.0202454642733264	0.940896116921038	758.109614543445	0	16.3124077573301						150	9	4	NaN	NaN	NaN	0.06369	1	36115	29.217	26.828	1	25867			17461	2050	14721	15154	17461	17461		
SGTICSSELPGAFEAAGFHLNEHLYNMIIR	30	Unmodified	_SGTICSSELPGAFEAAGFHLNEHLYNMIIR_			0	0	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	834.405043	3333.59107	1.3148	0.0010971	1.1592	0.00096721	2.474	0.0020643	834.90802961155	18.568	0.10638	18.568	18.515	18.621	0	375	22	1.07392668217569	0.0140441447605724	1.07392668217569	863.813446585071	0	11.2964146354873						234	13	5	NaN	NaN	NaN	0.011467	1	38570	37.061	36.784	1	45075			17462	515	14722	15155	17462	17462		
SGTIFDNFLITNDEAYAEEFGNETWGVTK	29	Unmodified	_SGTIFDNFLITNDEAYAEEFGNETWGVTK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1090.17008	3267.48842	0.85839	0.00093579	0.60881	0.0006637	1.4672	0.0015995	1090.50516734459	20.031	0.017739	20.031	20.031	20.049	0	168	133	1.21171599086077	0.0876061059274535	1.21171599086077	731.045680193089	0	52.8540233683867						335	3	5	NaN	NaN	NaN	0.014069	1	38522	56.748	56.734	1	80157			17463	868	14723	15156	17463	17463		
SGTLGHPGSLDETTYER	17	Unmodified	_SGTLGHPGSLDETTYER_			0	0	0	Q16595	Q16595	Q16595	FXN	Frataxin, mitochondrial;Frataxin intermediate form;Frataxin(56-210);Frataxin(78-210);Frataxin mature form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.28675	1818.83842	-0.20001	-0.00012147	0.86967	0.00052814	0.66965	0.00040667	607.621608441123	6.0283	0.062074	6.0283	6.0017	6.0638	0	744	31	0.82502364452135	0.020406225036543	0.82502364452135	499.426437766356	0	12.3528681219458						156	8	3	NaN	NaN	NaN	0.0022596	1	27682	39.82	38.11	1	37106			17464	1892	14724	15157	17464	17464		
SGTMNSYEMR	10	Unmodified	_SGTMNSYEMR_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.244623	1174.47469	2.212	0.0013012	-0.36618	-0.0002154	1.8458	0.0010858	588.244517676389	4.4677	0.14185	4.4677	4.4322	4.5741	0	609	28	0.916577990479294	0.0182550299424538	0.916577990479294	371.432326654919	0	7.39763371487373						246	17	4	NaN	NaN	NaN	0.00095772	1	8712	52.591	44.944	1	57114			17465	739	14725	15158	17465	17465		
SGTNLDGNDEFDEQLR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SGTNLDGNDEFDEQLR_			1	0	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.403209	1850.79186	1.1495	0.0010649	1.5584	0.0014437	2.7079	0.0025086	926.4054861791	11.97	0.17734	11.97	11.882	12.059	0	300	43	1.12400150285141	0.0280013716258987	1.12400150285141	453.550692031258	0	11.2989541798056						316	21	2	NaN	NaN	NaN	3.3009E-12	1	28502	144.51	136.55	1	119820			17466	224	14726	15159	17466	17466		
SGTSEFLNK	9	Unmodified	_SGTSEFLNK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.745639	981.476725	0.53191	0.00026156	-0.1033	-5.0796E-05	0.42861	0.00021077	491.74550453462	4.8578	0.31024	4.8578	4.7958	5.1061	0	747	52	0.822982596624503	0.034702651471917	0.822982596624503	334.2640859748	0	14.0948910982318						455	36	3	NaN	NaN	NaN	0.00081495	1	3868	90.308	74.81	1	564670			17467	700	14727	15160	17467	17467		
SGTTAPLGFDEMEVEIQTVK	20	Unmodified	_SGTTAPLGFDEMEVEIQTVK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.52755	2151.04055	0.52944	0.00056996	0.71559	0.00077035	1.245	0.0013403	1077.02865461952	16.298	0.10641	16.298	16.262	16.369	0	138	58	1.23157729878518	0.0377235597293333	1.23157729878518	496.442698801737	0	15.206179765502						244	13	3	NaN	NaN	NaN	0.021475	1	34034	29.217	28.783	1	48417			17468	3048	14728	15161	17468	17468		
SGTTSESGALSLEPSHIGDLQK	22	Unmodified	_SGTTSESGALSLEPSHIGDLQK_			0	0	0	Q7Z417	Q7Z417	Q7Z417	NUFIP2	Nuclear fragile X mental retardation-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.701	2213.08117	0.80402	0.00059393	1.5181	0.0011214	2.3221	0.0017153	739.036559311162	10.206	0.11525	10.206	10.17	10.285	0	570	28	0.942920803299286	0.0182221791516658	0.942920803299286	570.025869286656	0	11.0158917640599						296	14	4	NaN	NaN	NaN	1.2395E-16	1	34824	111.75	108.31	1	83975			17469	2134	14729	15162	17469	17469		
SGTVDPQELQK	11	Unmodified	_SGTVDPQELQK_			0	0	0	P30626	P30626	P30626	SRI	Sorcin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.306592	1200.59863	1.5705	0.00094433	-4.7397	-0.00285	-3.1692	-0.0019057	601.30488839824	4.7071	0.27487	4.7071	4.6007	4.8755	0	615	61	0.912521036363781	0.0405639373344322	0.912521036363781	369.694890714596	0	16.4339010085333						846	32	5	NaN	NaN	NaN	1.2525E-05	1	9474	144.47	112.52	1	483520			17470	915	14730	15163	17470	17470		
SGTWWDEHLSEENVPFIK	18	Unmodified	_SGTWWDEHLSEENVPFIK_			0	0	0	P09001	P09001	P09001	MRPL3	39S ribosomal protein L3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.344488	2173.01163	-0.64446	-0.00046745	-0.91349	-0.00066259	-1.5579	-0.00113	725.678047756905	15.65	0.062057	15.65	15.615	15.677	0	663	61	0.880024865079826	0.0406314919557856	0.880024865079826	532.064405844367	0	24.565863402126						240	8	3	NaN	NaN	NaN	0.013749	1	34353	41.87	41.747	1	46531			17471	594	14731	15164	17471	17471		
SGVAITFLTK	10	Unmodified	_SGVAITFLTK_			0	0	0	Q9BUQ8	Q9BUQ8	Q9BUQ8	DDX23	Probable ATP-dependent RNA helicase DDX23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.8055	1035.59645	-0.34243	-0.00017765	-3.938	-0.002043	-4.2804	-0.0022207	518.803391142257	12.21	0.062088	12.21	12.165	12.227	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	349.742459246403	0	7.43591355642377						70	8	2	NaN	NaN	NaN	0.042858	1	5134	37.749	32.441	1	27177			17472	2749	14732	15165	17472	17472		
SGVAYIAAPSGSAADK	16	Unmodified	_SGVAYIAAPSGSAADK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.870088	1463.72562	1.9355	0.0014185	-0.74883	-0.0005488	1.1867	0.00086968	732.869274939324	6.8087	0.19506	6.8087	6.7377	6.9328	0	471	52	1.00957851518677	0.0342629150938795	1.00957851518677	408.179754322664	0	13.8527395888676						586	23	4	NaN	NaN	NaN	0.0040201	1	17390	56.938	45.582	1	244870			17473	929	14733	15166	17473	17473		
SGVDADSSYFK	11	Unmodified	_SGVDADSSYFK_			0	0	0	Q9Y394	Q9Y394	Q9Y394	DHRS7	Dehydrogenase/reductase SDR family member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.264393	1174.51423	1.0158	0.00059753	1.7476	0.001028	2.7633	0.0016256	588.265138365864	6.7821	0.088676	6.7821	6.7377	6.8264	0	618	25	0.910492137470517	0.0162345681702797	0.910492137470517	368.965953860095	0	6.57886288518108						177	11	3	NaN	NaN	NaN	0.065175	1	8715	33.723	21.127	1	44035			17474	3373	14734	15167	17474	17474		
SGVDQMDLFGDMSTPPDLNSPTESK	25	Unmodified	_SGVDQMDLFGDMSTPPDLNSPTESK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	890.063281	2667.16801	0.51652	0.00045974	-0.63029	-0.000561	-0.11376	-0.00010126	890.39655587343	16.457	0.11527	16.457	16.422	16.537	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	592.619461514855	0	13.4142500890001						292	14	4	NaN	NaN	NaN	0.00055538	1	37501	48.037	46.189	1	55629			17475	1489	14735	15168	17475	17475		
SGVGNIFIK	9	Unmodified	_SGVGNIFIK_			0	0	0	P11940;Q4VXU2;Q96DU9	P11940	P11940	PABPC1;PABPC1L;PABPC5	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like;Polyadenylate-binding protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.77146	933.528367	-0.39053	-0.00018268	-1.9343	-0.00090481	-2.3248	-0.0010875	467.770458297462	9.7268	0.39012	9.7268	9.6558	10.046	0	750	37	0.820941264895493	0.0244908762672863	0.820941264895493	333.671540533539	0	9.95431556746269						507	45	3	NaN	NaN	NaN	0.040603	1	2945	49.96	28.686	1	252070			17476	661	14736	15169	17476	17476		
SGVGNVFIK	9	Unmodified	_SGVGNVFIK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.763635	919.512717	-0.66065	-0.0003044	-0.67906	-0.00031288	-1.3397	-0.00061729	460.763564213189	7.997	0.21295	7.997	7.935	8.1479	0	750	43	0.820941264895493	0.0285846129737781	0.820941264895493	333.74529687611	0	11.6207828147569						306	25	3	NaN	NaN	NaN	0.01134	1	2698	53.878	14.554	1	132910			17477	1653	14737	15170	17477	17477		
SGVGTALLLK	10	Unmodified	_SGVGTALLLK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.800217	957.585882	-0.10743	-5.1546E-05	-1.2169	-0.00058385	-1.3243	-0.00063539	479.799662295014	10.019	0.17732	10.019	9.9839	10.161	0	714	40	0.845418525735192	0.0264930907704451	0.845418525735192	343.495068578755	0	10.7641904619296						404	21	4	NaN	NaN	NaN	0.0089894	1	3397	40.502	30.423	1	146020			17478	495	14738	15171	17478	17478		
SGVISDTELQQALSNGTWTPFNPVTVR	27	Unmodified	_SGVISDTELQQALSNGTWTPFNPVTVR_			0	0	0	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	973.161193	2916.46175	0.7239	0.00070447	0.10154	9.882E-05	0.82544	0.00080329	973.495965253747	19.304	0.044346	19.304	19.286	19.33	0	411	25	1.04982941439551	0.0160803646300043	1.04982941439551	633.700479383153	0	9.70646719834679						104	6	4	NaN	NaN	NaN	0.022923	1	38097	27.977	25.728	1	19508			17479	319	14739	15172	17479	17479		
SGVISGGASDLK	12	Unmodified	_SGVISGGASDLK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.790578	1089.5666	0.7388	0.00040323	-0.21398	-0.00011679	0.52482	0.00028644	545.790652984403	5.2835	0.16848	5.2835	5.2213	5.3898	0	636	34	0.898312834727904	0.0223364666145487	0.898312834727904	364.359715391886	0	9.05977105514961						278	20	2	NaN	NaN	NaN	0.049168	1	6453	44.598	19.344	1	120500			17480	1764	14740	15173	17480	17480		
SGVLDTLTK	9	Unmodified	_SGVLDTLTK_			0	0	0	Q99417	Q99417	Q99417	MYCBP	C-Myc-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.266207	932.517862	-1.9169	-0.0008957	-0.91717	-0.00042856	-2.8341	-0.0013243	467.265672364517	9.106	0.13301	9.106	9.0617	9.1947	0	786	31	0.796423123669906	0.0204488487727063	0.796423123669906	323.71122638189	0	8.31156418940714						168	16	2	NaN	NaN	NaN	0.0156	1	2922	60.892	47.244	1	47593			17481	2636	14741	15174	17481	17481		
SGVPVLAVSLALEGK	15	Unmodified	_SGVPVLAVSLALEGK_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.427042	1438.83953	1.0417	0.0007505	0.84602	0.00060949	1.8878	0.00136	720.427699254433	16.918	0.20396	16.918	16.794	16.998	0	336	43	1.09998710857178	0.0280360922618905	1.09998710857178	444.804603862345	0	11.3370264207824						485	24	3	NaN	NaN	NaN	0.00031298	1	16650	63.908	58.042	1	99615			17482	1946	14742	15175	17482	17482		
SGVSLAALK	9	Unmodified	_SGVSLAALK_			0	0	0	P10412;P16402	P10412	P10412	HIST1H1E;HIST1H1D	Histone H1.4;Histone H1.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.258185	844.501818	-1.057	-0.00044739	-1.8844	-0.00079758	-2.9414	-0.001245	423.25755721529	8.0502	0.14202	8.0502	7.997	8.139	0	807	34	0.782101955086014	0.0225078287031693	0.782101955086014	318.370908899267	0	9.16228099799207						332	17	4	NaN	NaN	NaN	0.026055	1	1490	43.734	6.1261	1	313970			17483	625	14743	15176	17483	17483		
SGVYQHVTGEMMGGHAIR	18	Unmodified	_SGVYQHVTGEMMGGHAIR_			0	0	0	P07858	P07858	P07858	CTSB	Cathepsin B;Cathepsin B light chain;Cathepsin B heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.973455	1928.89854	1.1828	0.00076167	0.84659	0.00054518	2.0293	0.0013068	644.308588126666	7.6068	0.11526	7.6068	7.5536	7.6688	0	570	31	0.942920803299286	0.0202454642733264	0.942920803299286	570.548982538082	0	12.2502642870328						257	14	5	NaN	NaN	NaN	7.7464E-05	1	30267	74.733	60.955	1	58483			17484	566	14744	15177	17484	17484		
SGWAIDPFGHSPTMAYLLNR	20	Unmodified	_SGWAIDPFGHSPTMAYLLNR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.033479	2232.07861	0.0041656	3.1035E-06	0.15724	0.00011715	0.1614	0.00012025	745.367630075187	17.699	0.079787	17.699	17.654	17.734	0	606	46	0.918606045818476	0.0304208382695857	0.918606045818476	555.297362151244	0	18.3893969808126						292	10	5	NaN	NaN	NaN	1.4747E-08	1	35006	110.14	105.3	1	74222			17485	1901	14745	15178	17485	17485		
SGYAIQADEEQLR	13	Unmodified	_SGYAIQADEEQLR_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.357345	1478.70014	2.0183	0.0014942	3.5233	0.0026085	5.5415	0.0041027	740.359623598773	7.864	0.11527	7.864	7.8197	7.935	0	405	34	1.05384839605172	0.0221028774104899	1.05384839605172	426.037957995355	0	8.93550229147445						197	14	3	NaN	NaN	NaN	0.0049995	1	17850	53.028	47.877	1	78293			17486	2131	14746	15179	17486	17486		
SGYHQSASEHGLVVIAPDTSPR	22	Unmodified	_SGYHQSASEHGLVVIAPDTSPR_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	577.78837	2307.12437	0.46333	0.0002677	0.43247	0.00024987	0.89579	0.00051758	577.788161895389	7.1457	0.17734	7.1457	7.0747	7.2521	0	627	40	0.90440375274676	0.026386663985959	0.90440375274676	728.800956432342	0	21.2633194982004						427	21	4	NaN	NaN	NaN	0.0050987	1	35692	52.149	49.76	1	110240			17487	634	14747	15180	17487	17487		
SGYHQSASEHGLVVIAPDTSPR	22	Unmodified	_SGYHQSASEHGLVVIAPDTSPR_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.048734	2307.12437	1.4662	0.001129	0.059832	4.6073E-05	1.526	0.0011751	770.382610849116	7.1545	0.11525	7.1545	7.1014	7.2166	0	555	43	0.953040030838688	0.0283240376798207	0.953040030838688	575.996864404664	0	17.1184382218438						364	14	4	NaN	NaN	NaN	6.3966E-06	1	35693	59.689	57.588	1	72626			17488	634	14747	15180	17488	17488		
SGYLLPDTK	9	Unmodified	_SGYLLPDTK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.266207	992.517862	0.11771	5.8533E-05	-0.13744	-6.8345E-05	-0.019732	-9.8118E-06	497.266370729987	7.5801	0.38146	7.5801	7.4205	7.802	0	711	85	0.847456455381371	0.0570501934347132	0.847456455381371	344.151513332712	0	23.1680463129459						1571	44	3	NaN	NaN	NaN	0.0021924	1	4117	86.205	73.378	1	855610			17489	700	14748	15181	17489	17489		
SGYPDIGFPLFPLSK	15	Unmodified	_SGYPDIGFPLFPLSK_			0	0	0	Q9C0C9	Q9C0C9	Q9C0C9	UBE2O	E2/E3 hybrid ubiquitin-protein ligase UBE2O	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.432324	1636.85009	0.3963	0.00032474	2.1476	0.0017598	2.5439	0.0020846	819.934395003276	19.268	0.12414	19.268	19.224	19.348	0	369	43	1.07793901817685	0.0280863584131199	1.07793901817685	435.386469835651	0	11.344259957033						389	15	5	NaN	NaN	NaN	0.00021508	1	22692	68.108	61.361	1	88777			17490	2820	14749	15182	17490	17490		
SHCFVTYSTVEEAVATR	17	Unmodified	_SHCFVTYSTVEEAVATR_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.975518	1955.90473	1.0241	0.00066869	1.4069	0.0009187	2.431	0.0015874	653.310751461447	11.146	0.11528	11.146	11.11	11.225	0	588	64	0.93076847747433	0.0425596847399279	0.93076847747433	563.140277032549	0	25.7497683203629						290	14	2	NaN	NaN	NaN	0.037998	1	30813	40.224	32.26	1	111160			17491	3269	14750	15183	17491	17491		
SHEGETAYIR	10	Unmodified	_SHEGETAYIR_			0	0	0	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.778002	1161.54145	1.7688	0.001029	-0.22747	-0.00013233	1.5413	0.00089669	581.777844082742	2.8627	0.36357	2.8627	2.8094	3.173	0	615	82	0.912521036363781	0.0548335173161099	0.912521036363781	369.836087666732	0	22.2235024827543						903	42	4	NaN	NaN	NaN	3.9884E-14	1	8371	166.61	153.34	1	354430			17492	1572	14751	15184	17492	17492		
SHEGETSYIR	10	Unmodified	_SHEGETSYIR_			0	0	0	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.775459	1177.53637	2.5876	0.0015261	-0.64149	-0.00037833	1.9461	0.0011478	589.77524972399	2.6764	0.23057	2.6764	2.6409	2.8715	0	609	40	0.916577990479294	0.0263720347724746	0.916577990479294	371.421116527765	0	10.6866308181582						333	27	3	NaN	NaN	NaN	0.037768	1	8814	43.272	31.315	1	93318			17493	1644	14752	15185	17493	17493		
SHEQVLEEMLEAGLDPSQRPK	21	Unmodified	_SHEQVLEEMLEAGLDPSQRPK_			0	0	1	Q8WVB6	Q8WVB6	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	798.397034	2392.16927	0.92871	0.00074148	1.4259	0.0011385	2.3547	0.0018799	798.396913302667	14.675	0.10641	14.675	14.631	14.737	0	399	25	1.0578662689527	0.0160670595642813	1.0578662689527	639.215574264668	0	9.70851893812119						193	13	4	NaN	NaN	NaN	0.047857	1	36309	18.927	16.956	1	33375			17494	2377	14753	15186	17494	17494		
SHESFQEMDLNDDWK	15	Unmodified	_SHESFQEMDLNDDWK_			0	0	0	Q9NWM8	Q9NWM8	Q9NWM8	FKBP14	Peptidyl-prolyl cis-trans isomerase FKBP14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.596707	1879.76829	-0.33414	-0.0002097	0.66204	0.00041549	0.32791	0.00020579	627.931723973363	10.454	0.079831	10.454	10.418	10.498	0	732	37	0.833184998970724	0.0244772608396998	0.833184998970724	504.243297498835	0	14.8136305079864						194	10	4	NaN	NaN	NaN	1.8799E-06	1	29141	130.99	129.28	1	45267			17495	3081	14754	15187	17495	17495		
SHFEQWGTLTDCVVMR	16	Unmodified	_SHFEQWGTLTDCVVMR_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.96971	1964.8873	2.0986	0.0013766	-2.0611	-0.001352	0.037474	2.4582E-05	656.303052605667	12.884	0.34584	12.884	12.777	13.123	0	570	97	0.942920803299286	0.0648484056453918	0.942920803299286	570.474421917984	0	39.233789935925						1739	40	6	NaN	NaN	NaN	1.2617E-06	1	31011	126.21	114.53	1	717420			17496	608	14755	15188	17496	17496		
SHFEQWGTLTDCVVMR	16	Unmodified	_SHFEQWGTLTDCVVMR_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.450927	1964.8873	2.9728	0.0029236	-1.29	-0.0012686	1.6828	0.0016549	983.9513481708	12.884	0.30148	12.884	12.813	13.114	0	225	61	1.17390432875292	0.0398646712076904	1.17390432875292	473.482533628091	0	16.0790151832219						1458	35	6	NaN	NaN	NaN	6.8259E-09	1	31012	135.24	117.83	1	580610			17497	608	14755	15188	17497	17497		
SHFEQWGTLTDCVVMR	16	Oxidation (M)	_SHFEQWGTLTDCVVM(Oxidation (M))R_	SHFEQWGTLTDCVVM(1)R	SHFEQWGTLTDCVVM(140)R	0	1	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.301349	1980.88222	0.8971	0.00059325	0.21864	0.00014459	1.1157	0.00073784	661.635719986721	11.509	0.15078	11.509	11.447	11.598	0	549	76	0.957085760909907	0.05061719731732	0.957085760909907	579.011559683508	0	30.62206498365						766	18	5	NaN	NaN	NaN	1.7847E-05	1	31297	135.21	130.9	1	310720			17498	608	14755	15189	17498	17498	168	
SHFEQWGTLTDCVVMR	16	Oxidation (M)	_SHFEQWGTLTDCVVM(Oxidation (M))R_	SHFEQWGTLTDCVVM(1)R	SHFEQWGTLTDCVVM(95)R	0	1	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.448385	1980.88222	2.1131	0.0020951	-0.17895	-0.00017742	1.9342	0.0019176	991.449002279131	11.518	0.15089	11.518	11.465	11.616	0	246	91	1.1599488233373	0.0598957641668345	1.1599488233373	467.827218723536	0	24.1569871012687						726	18	5	NaN	NaN	NaN	9.8261E-06	1	31298	94.507	91.002	1	157780			17499	608	14755	15189	17499	17499	168	
SHFEQWGTLTDCVVMRDPNTK	21	Unmodified	_SHFEQWGTLTDCVVMRDPNTK_			0	0	1	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.058136	2520.15258	2.1404	0.0018002	-0.089698	-7.5441E-05	2.0507	0.0017248	841.392845415596	11.678	0.28376	11.678	11.607	11.89	0	351	64	1.08996939197032	0.0421092301402715	1.08996939197032	658.420759995561	0	25.43703659574						1280	33	6	NaN	NaN	NaN	5.3719E-29	1	36917	234.91	211.8	1	686010			17500	608	14756	15190	17500	17500		
SHGFAAEFK	9	Unmodified	_SHGFAAEFK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.243067	992.47158	0.86484	0.00043003	2.0643	0.0010265	2.9292	0.0014565	497.24420243306	4.778	0.18621	4.778	4.7071	4.8933	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	353.247765602197	0	8.26281720128264						309	22	3	NaN	NaN	NaN	0.0090693	1	4106	63.397	37.174	1	69086			17501	1273	14757	15191	17501	17501		
SHGIDLDHNR	10	Unmodified	_SHGIDLDHNR_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	388.523254	1162.54793	0.070543	2.7408E-05	1.4212	0.00055215	1.4917	0.00057956	388.523650424791	2.4015	0.13301	2.4015	2.3749	2.5079	0	879	16	0.732894652678068	0.0102693962804801	0.732894652678068	445.543779562595	0	6.24300588892544						104	16	2	NaN	NaN	NaN	0.009561	1	8402	50.834	41.441	1	22294			17502	3042	14758	15192	17502	17502		
SHGLLVQQALPK	12	Unmodified	_SHGLLVQQALPK_			0	0	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.880062	1289.74557	1.2532	0.00080941	1.3398	0.00086535	2.593	0.0016748	645.881253302201	7.5979	0.16846	7.5979	7.4915	7.66	0	501	40	0.98941132619024	0.0262372893807942	0.98941132619024	400.530888896418	0	10.6213104294922						401	20	3	NaN	NaN	NaN	3.6071E-05	1	12071	72.922	66.231	1	95438			17503	2848	14759	15193	17503	17503		
SHIEIIR	7	Unmodified	_SHIEIIR_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.255977	866.497401	-0.26725	-0.00011605	1.325	0.00057539	1.0578	0.00045934	434.256571652908	4.2549	0.20396	4.2549	4.2194	4.4233	0	738	37	0.829104889055312	0.0244840671338465	0.829104889055312	337.367489279103	0	9.96270600418057						367	24	3	NaN	NaN	NaN	0.011873	1	1814	81.32	7.6833	1	133780			17504	475	14760	15194	17504	17504		
SHILPHPVVVADLLK	15	Unmodified	_SHILPHPVVVADLLK_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.662764	1636.96646	-0.15832	-8.6549E-05	-0.50396	-0.0002755	-0.66228	-0.00036205	546.662902099081	12.44	0.079804	12.44	12.423	12.502	0	648	28	0.890187667287968	0.0182854326605286	0.890187667287968	539.325652912426	0	11.0783414226246						162	10	4	NaN	NaN	NaN	2.1394E-06	1	22699	59.67	53.972	1	38386			17505	253	14761	15195	17505	17505		
SHISDQSPLSSK	12	Unmodified	_SHISDQSPLSSK_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.322773	1284.63099	2.2326	0.0014363	4.3222	0.0027806	6.5548	0.0042169	643.326106866779	3.4657	0.19519	3.4657	3.4035	3.5987	0	561	49	0.948993180460448	0.0323792954262402	0.948993180460448	384.185116205371	0	13.1082537073053						366	23	3	NaN	NaN	NaN	4.6955E-05	1	11897	75.474	62.201	1	100160			17506	1042	14762	15196	17506	17506		
SHLLNCCPHDVLSGTR	16	Unmodified	_SHLLNCCPHDVLSGTR_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.440894	1864.86724	2.3243	0.0021696	-1.46	-0.0013628	0.86429	0.00080676	933.439152548481	6.5338	0.08867	6.5338	6.4983	6.587	0	291	52	1.12999890578964	0.0339852945793708	1.12999890578964	455.945137749727	0	13.7127830293147						345	11	4	NaN	NaN	NaN	0.0032242	1	28794	30.875	28.573	1	68713			17507	3372	14763	15197	17507	17507		
SHLLNCCPHDVLSGTR	16	Unmodified	_SHLLNCCPHDVLSGTR_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.629688	1864.86724	0.73626	0.00045842	1.5734	0.00097962	2.3096	0.001438	622.965089477292	6.5338	0.10642	6.5338	6.4895	6.5959	0	669	64	0.875957769340875	0.0427134196755701	0.875957769340875	530.160360509637	0	25.8516594822136						606	13	4	NaN	NaN	NaN	3.4872E-07	1	28795	80.128	69.156	1	180920			17508	3372	14763	15197	17508	17508		
SHLPLALLPQTLLDQK	16	Unmodified	_SHLPLALLPQTLLDQK_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.352366	1786.03527	-2.3987	-0.0014305	0.6781	0.00040439	-1.7206	-0.0010261	596.352669066305	16.723	0.13301	16.723	16.661	16.794	0	753	49	0.81889964927511	0.0326545061088502	0.81889964927511	495.788106199286	0	19.7700850854083						413	16	4	NaN	NaN	NaN	0.001684	1	26872	71.896	45.431	1	102890			17509	617	14764	15198	17509	17509		
SHLPLALLPQTLLDQK	16	Unmodified	_SHLPLALLPQTLLDQK_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.352366	1786.03527	-0.80209	-0.00047833	-0.79924	-0.00047663	-1.6013	-0.00095495	596.351758158467	16.723	0.13299	16.723	16.67	16.803	0	603	31	0.920633820089869	0.0202791503902223	0.920633820089869	557.381241727612	0	12.2776480496663						220	16	3	NaN	NaN	NaN	0.055271	1	26873	41.317	26.342	1	61415			17510	617	14764	15198	17510	17510		
SHLPLALLPQTLLDQK	16	Unmodified	_SHLPLALLPQTLLDQK_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.024911	1786.03527	0.73654	0.00065848	0.2095	0.0001873	0.94604	0.00084578	894.02517512416	16.732	0.10642	16.732	16.67	16.777	0	255	40	1.15396378101328	0.0259387539969269	1.15396378101328	465.766474624506	0	10.4694811085773						309	13	3	NaN	NaN	NaN	0.00023522	1	26874	75.5	58.741	1	81028			17511	617	14764	15198	17511	17511		
SHMMDVQGSTQDSAIK	16	Unmodified	_SHMMDVQGSTQDSAIK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.892911	1733.77127	3.1444	0.002729	-2.1468	-0.0018632	0.99762	0.00086583	867.891004158866	5.2213	0.15076	5.2213	5.1859	5.3366	0	345	64	1.09397730668811	0.0420686347399961	1.09397730668811	441.657082938074	0	16.9838171129002						611	18	5	NaN	NaN	NaN	0.0045158	1	25428	67.838	67.031	1	201810			17512	680	14765	15199	17512	17512		
SHMMDVQGSTQDSAIK	16	Unmodified	_SHMMDVQGSTQDSAIK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.931033	1733.77127	0.18602	0.00010769	1.9973	0.0011563	2.1833	0.001264	578.932314230788	5.2213	0.088684	5.2213	5.1859	5.2745	0	660	100	0.882057989648486	0.0671957373111673	0.882057989648486	534.150044922886	0	40.6918893367659						709	11	4	NaN	NaN	NaN	0.0017315	1	25429	83.214	70.618	1	183100			17513	680	14765	15199	17513	17513		
SHMMDVQGSTQDSAIK	16	Oxidation (M)	_SHM(Oxidation (M))MDVQGSTQDSAIK_	SHM(0.973)M(0.027)DVQGSTQDSAIK	SHM(16)M(-16)DVQGSTQDSAIK	0	1	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.890368	1749.76618	4.1574	0.0036415	-2.5699	-0.0022509	1.5876	0.0013906	875.887990738104	3.9445	0.053201	3.9445	3.9179	3.9711	0	348	22	1.09197348738011	0.0140286686675297	1.09197348738011	440.816142310127	0	5.66319940478076						87	7	3	NaN	NaN	NaN	0.00029031	1	25869	59.67	57.534	2	14651			17514	680	14765	15200	17514	17514	214	
SHMMDVQGSTQDSAIK	16	Oxidation (M)	_SHM(Oxidation (M))MDVQGSTQDSAIK_	SHM(0.775)M(0.225)DVQGSTQDSAIK	SHM(5.4)M(-5.4)DVQGSTQDSAIK	0	1	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.262671	1749.76618	0.61181	0.00035746	1.9951	0.0011657	2.607	0.0015231	584.26372560015	3.9445	0.053201	3.9445	3.9179	3.9711	0	747	37	0.822982596624503	0.0244942818992349	0.822982596624503	498.33951630925	0	14.8319887250016						123	7	3	NaN	NaN	NaN	0.00014591	1	25870	56.938	50.561	2	20999			17515	680	14765	15200	17515	17515	214	
SHPLDPIDTVDFER	14	Unmodified	_SHPLDPIDTVDFER_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.899377	1639.7842	1.6679	0.0013692	1.2074	0.00099116	2.8753	0.0023603	820.900258683872	11.474	0.16849	11.474	11.385	11.553	0	375	55	1.07392668217569	0.036130958221537	1.07392668217569	433.759351094913	0	14.5933062775392						564	20	4	NaN	NaN	NaN	0.01012	1	22748	37.504	35.662	1	145190			17516	1101	14766	15201	17516	17516		
SHSAHFFEFLTK	12	Unmodified	_SHSAHFFEFLTK_			0	0	0	P30046;A6NHG4	P30046	P30046	DDT;DDTL	D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.241976	1449.7041	0.14641	7.0898E-05	-0.17597	-8.5213E-05	-0.029563	-1.4316E-05	484.24190281903	10.418	0.20397	10.418	10.365	10.569	0	720	52	0.841341816837976	0.0346592613234649	0.841341816837976	510.283552854191	0	21.0212432729294						551	24	5	NaN	NaN	NaN	0.00015045	1	16971	120.65	116.41	1	325740			17517	896	14767	15202	17517	17517		
SHSAHFFEFLTK	12	Unmodified	_SHSAHFFEFLTK_			0	0	0	P30046;A6NHG4	P30046	P30046	DDT;DDTL	D-dopachrome decarboxylase;D-dopachrome decarboxylase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.859326	1449.7041	1.964	0.0014256	1.295	0.00093996	3.2589	0.0023655	725.860042755914	10.418	0.15075	10.418	10.365	10.516	0	387	37	1.06589869032374	0.0240906221251305	1.06589869032374	430.989420367449	0	9.74089128756475						372	18	4	NaN	NaN	NaN	0.00046727	1	16974	54.27	46.269	1	102800			17518	896	14767	15202	17518	17518		
SHSSAQFLIGDQEPWAFR	18	Unmodified	_SHSSAQFLIGDQEPWAFR_			0	0	0	O60502	O60502	O60502	MGEA5	Protein O-GlcNAcase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.669306	2074.98609	0.055555	3.8481E-05	-0.26235	-0.00018172	-0.20679	-0.00014324	693.003428069368	14.294	0.070932	14.294	14.258	14.329	0	630	28	0.902373728295776	0.0182727556379993	0.902373728295776	545.740091280769	0	11.0510479384926						139	9	3	NaN	NaN	NaN	0.00063258	1	32945	46.206	44.358	1	25491			17519	262	14768	15203	17519	17519		
SHSTEPGLVLTLGQGDVGQLGLGENVMER	29	Unmodified	_SHSTEPGLVLTLGQGDVGQLGLGENVMER_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	998.504743	2992.4924	1.3685	0.0013665	3.3639	0.0033588	4.7324	0.0047253	999.178111227613	16.351	0.88671	16.351	16.28	17.167	0	396	88	1.05987478976334	0.0581749199514996	1.05987478976334	639.686913105757	0	35.1114446002236						1643	101	5	NaN	NaN	NaN	1.458E-21	1	38213	164.13	149.73	1	633790			17520	758	14769	15204	17520	17520		
SHTDQLVLIFAGK	13	Unmodified	_SHTDQLVLIFAGK_			0	0	0	Q9UMX0	Q9UMX0	Q9UMX0	UBQLN1	Ubiquilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.933031	1427.77726	-2.4861	-0.0011857	0.7305	0.0003484	-1.7556	-0.00083732	476.933460066381	13.026	0.088668	13.026	12.999	13.088	0	783	19	0.798467866007927	0.0122676008720245	0.798467866007927	484.350198248488	0	7.44152040094662						128	11	3	NaN	NaN	NaN	0.0024818	1	16328	64.906	49.29	1	26978			17521	3289	14770	15205	17521	17521		
SHTEEDCTEELFDFLHAR	18	Unmodified	_SHTEEDCTEELFDFLHAR_			0	0	0	P07919	P07919	P07919	UQCRH	Cytochrome b-c1 complex subunit 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.991897	2234.95386	0.92565	0.00069053	0.24155	0.00018019	1.1672	0.00087072	746.326775766733	14.967	0.16849	14.967	14.914	15.083	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	605.411001812894	0	15.8471657765983						672	20	6	NaN	NaN	NaN	5.7812E-35	1	35039	245.85	237.48	1	430790			17522	569	14771	15206	17522	17522		
SHTFPELAYR	10	Unmodified	_SHTFPELAYR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.806562	1219.59857	1.7781	0.0010861	2.4295	0.001484	4.2077	0.0025701	610.808876118872	7.6511	0.21288	7.6511	7.5624	7.7753	0	591	34	0.928742107665821	0.0222962488144068	0.928742107665821	376.199982500372	0	9.03140747530517						355	25	4	NaN	NaN	NaN	0.0055642	1	10006	56.378	21.599	1	123800			17523	3036	14772	15207	17523	17523		
SHTILLVQPTK	11	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SHTILLVQPTK_			1	0	0	P84090	P84090	P84090	ERH	Enhancer of rudimentary homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.874445	1277.73434	1.9235	0.0012308	1.231	0.00078769	3.1545	0.0020185	639.875319160619	10.019	0.2926	10.019	9.9218	10.214	0	495	73	0.993446994398923	0.0484414451748214	0.993446994398923	402.204655175843	0	19.6118915881837						1698	34	4	NaN	NaN	NaN	2.6953E-30	1	11709	225.68	199.23	1	1309800			17524	1484	14773	15208	17524	17524		
SHYADVDPENQNFLLESNLGK	21	Unmodified	_SHYADVDPENQNFLLESNLGK_			0	0	0	Q96QD8	Q96QD8	Q96QD8	SLC38A2	Sodium-coupled neutral amino acid transporter 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.380149	2389.11862	0.65055	0.00051873	0.36343	0.0002898	1.014	0.00080853	797.715036253584	12.369	0.088673	12.369	12.325	12.414	0	576	31	0.938871150116794	0.0202482682426971	0.938871150116794	567.316972444245	0	12.2351040771216						274	11	5	NaN	NaN	NaN	3.6366E-11	1	36292	111.75	110.66	1	59907			17525	2604	14774	15209	17525	17525		
SIADSEESEAYK	12	Unmodified	_SIADSEESEAYK_			0	0	0	Q9BY42	Q9BY42	Q9BY42	RTFDC1	Protein RTF2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.796254	1327.57796	1.8709	0.0012438	-0.2306	-0.0001533	1.6403	0.0010905	664.796462745648	4.5475	0.10641	4.5475	4.5209	4.6273	0	582	31	0.934820374997243	0.0202566836468107	0.934820374997243	378.317233093639	0	8.19778078642878						190	13	3	NaN	NaN	NaN	0.0042589	1	13198	58.889	33.033	1	42205			17526	2794	14775	15210	17526	17526		
SIAEEQYSDLEK	12	Unmodified	_SIAEEQYSDLEK_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.333004	1410.65145	1.6945	0.0011969	0.6263	0.00044238	2.3208	0.0016393	706.333356262172	7.0836	0.1774	7.0836	7.0392	7.2166	8.8818E-16	444	37	1.02770517576159	0.0241572026210712	1.02770517576159	415.654840107314	0	9.77036841860826						350	21	4	NaN	NaN	NaN	0.0016384	1	15769	66.664	55.309	1	105320			17527	301	14776	15211	17527	17527		
SIAFHSAVSLDPIK	14	Unmodified	_SIAFHSAVSLDPIK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.608436	1483.80348	-0.6291	-0.00031179	-0.81357	-0.00040321	-1.4427	-0.000715	495.607973542812	11.341	0.079849	11.341	11.314	11.394	0	714	22	0.845418525735192	0.0142694733102946	0.845418525735192	512.644876567114	0	8.65272307283817						92	10	2	NaN	NaN	NaN	0.051645	1	18036	31.04	26.794	1	19785			17528	3394	14777	15212	17528	17528		
SIATLAITTLLK	12	Unmodified	_SIATLAITTLLK_			0	0	0	Q9Y678;Q9UBF2	Q9Y678;Q9UBF2	Q9Y678	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.894846	1243.77514	0.60606	0.00037751	-0.22538	-0.00014039	0.38068	0.00023713	622.894557382115	18.656	0.15074	18.656	18.621	18.772	0	498	73	0.991429299781895	0.0484615459622925	0.991429299781895	401.504953371668	0	19.6257572337126						532	18	4	NaN	NaN	NaN	0.0011928	1	10750	76.85	47.541	1	227660			17529	3452;3173	14778	15213	17529	17529		
SIATLMTDEIFHDVAYK	17	Unmodified	_SIATLMTDEIFHDVAYK_			0	0	0	Q9Y6M7	Q9Y6M7	Q9Y6M7	SLC4A7	Sodium bicarbonate cotransporter 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.992398	1952.95536	-0.40214	-0.00026219	0.94674	0.00061727	0.5446	0.00035507	652.32735875375	18.178	0.09753	18.178	18.142	18.24	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	553.333330527968	0	9.81837600370966						224	12	4	NaN	NaN	NaN	3.5785E-05	1	30767	69.327	66.242	1	62973			17530	3471	14779	15214	17530	17530		
SIATLMTDEIFHDVAYK	17	Unmodified	_SIATLMTDEIFHDVAYK_			0	0	0	Q9Y6M7	Q9Y6M7	Q9Y6M7	SLC4A7	Sodium bicarbonate cotransporter 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.484959	1952.95536	0.56718	0.00055441	1.173	0.0011466	1.7402	0.001701	977.987017494885	18.178	0.062083	18.178	18.151	18.213	0	159	28	1.21767724410157	0.017881307890701	1.21767724410157	491.158937688609	0	7.21255507616854						181	8	4	NaN	NaN	NaN	0.027638	1	30768	41.317	37.467	1	36342			17531	3471	14779	15214	17531	17531		
SICTTVLELLDK	12	Unmodified	_SICTTVLELLDK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.37616	1390.73777	0.78927	0.00054963	0.1865	0.00012987	0.97577	0.0006795	696.376517565872	18.674	0.36358	18.674	18.621	18.984	0	504	67	0.987393073566096	0.0444046531951731	0.987393073566096	399.406142302391	0	17.9619360392165						1290	42	6	NaN	NaN	NaN	2.4421E-07	1	15176	142.71	86.507	1	2000900			17532	863	14780	15215	17532	17532		
SIDAGPVDAWTLAFSPDSQYLATGTHVGK	29	Unmodified	_SIDAGPVDAWTLAFSPDSQYLATGTHVGK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1002.16108	3003.46142	0.74272	0.00074432	0.71108	0.00071262	1.4538	0.0014569	1002.49655613926	18	0.12414	18	17.938	18.062	0	405	25	1.05384839605172	0.0160737100321473	1.05384839605172	636.038943517888	0	9.70111601019903						345	15	5	NaN	NaN	NaN	0.0039398	1	38232	35.068	34.626	1	75107			17533	2830	14781	15216	17533	17533		
SIDGTADDEDEGVPTDQAIR	20	Unmodified	_SIDGTADDEDEGVPTDQAIR_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.46928	2102.924	3.1208	0.0032846	-2.8578	-0.0030078	0.26299	0.00027679	1052.46584329158	8.1656	0.079818	8.1656	8.1302	8.21	0	216	49	1.17988115188462	0.0318785889633038	1.17988115188462	475.674062442629	0	12.851987586116						229	10	3	NaN	NaN	NaN	1.048E-07	1	33349	101.43	99.718	1	50709			17534	3041	14782	15217	17534	17534		
SIDLPIQSSLCR	12	Unmodified	_SIDLPIQSSLCR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.863751	1387.71295	1.0249	0.00071218	-2.3777	-0.0016521	-1.3527	-0.00093996	694.861998250016	12.609	0.19508	12.609	12.52	12.715	0	483	43	1.00151498427745	0.0282340678314075	1.00151498427745	405.127238982664	0	11.4210871782809						367	23	2	NaN	NaN	NaN	0.070685	1	15078	32.549	24.991	1	229730			17535	450	14783	15218	17535	17535		
SIDMSWDSVTMK	12	Unmodified	_SIDMSWDSVTMK_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.315245	1398.61594	0.88522	0.00061993	0.35355	0.0002476	1.2388	0.00086753	700.315694205744	13.256	0.13301	13.256	13.212	13.345	0	507	43	0.985374541851584	0.0282535899920621	0.985374541851584	398.56753093703	0	11.4281048727758						464	16	4	NaN	NaN	NaN	0.00039642	1	15393	81.335	63.866	1	160250			17536	3225	14784	15219	17536	17536		
SIDPDSIQSALLASGLGSK	19	Unmodified	_SIDPDSIQSALLASGLGSK_			0	0	0	A3KN83	A3KN83	A3KN83	SBNO1	Protein strawberry notch homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.991463	1857.96837	0.49651	0.00046175	0.15277	0.00014207	0.64927	0.00060382	930.492570585501	17.06	0.10641	17.06	16.998	17.105	0	252	46	1.15595906938629	0.029933448623392	1.15595906938629	466.432629406185	0	12.0782279566492						330	13	3	NaN	NaN	NaN	0.071281	1	28660	24.471	22.082	1	69594			17537	8	14785	15220	17537	17537		
SIDQFANLVLHQTVER	16	Unmodified	_SIDQFANLVLHQTVER_			0	0	0	O15116	O15116	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.998763	1868.97446	-0.59985	-0.00037431	-0.68951	-0.00043025	-1.2894	-0.00080456	624.332829344497	16.342	0.079809	16.342	16.307	16.386	0	624	43	0.906433495720521	0.0284262615360348	0.906433495720521	548.596455454213	0	17.2042917589746						305	10	3	NaN	NaN	NaN	8.5279E-05	1	28916	42.941	38.124	1	75283			17538	144	14786	15221	17538	17538		
SIDQFANLVLHQTVER	16	Unmodified	_SIDQFANLVLHQTVER_			0	0	0	O15116	O15116	O15116	LSM1	U6 snRNA-associated Sm-like protein LSm1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.494507	1868.97446	0.4335	0.00040554	1.4028	0.0013123	1.8363	0.0017179	935.495386281278	16.342	0.088661	16.342	16.298	16.386	0	162	22	1.21569043230068	0.0139095915497522	1.21569043230068	490.512984363216	0	5.61231303715232						152	11	3	NaN	NaN	NaN	0.031978	1	28918	34.472	23.501	1	32494			17539	144	14786	15221	17539	17539		
SIDSFGQVSHPK	12	Unmodified	_SIDSFGQVSHPK_			0	0	0	Q86XZ4	Q86XZ4	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.327859	1300.64116	1.6198	0.001055	0.15781	0.00010279	1.7776	0.0011578	651.328025979616	5.2479	0.088711	5.2479	5.2125	5.3012	0	477	25	1.0055473068722	0.0161270627425241	1.0055473068722	407.026883358379	0	6.52793562366816						159	11	3	NaN	NaN	NaN	0.0013493	1	12365	75.474	64.114	1	41155			17540	2190	14787	15222	17540	17540		
SIDSNPYDTDK	11	Unmodified	_SIDSNPYDTDK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.777864	1253.54118	2.2645	0.0014216	-0.011816	-7.4177E-06	2.2527	0.0014142	627.778078139525	4.4322	0.1862	4.4322	4.3701	4.5563	0	588	37	0.93076847747433	0.0243214961029116	0.93076847747433	376.906541814629	0	9.8487768008444						284	22	3	NaN	NaN	NaN	0.021894	1	11010	26.579	16.491	1	68261			17541	1082	14788	15223	17541	17541		
SIDTGMGLER	10	Unmodified	_SIDTGMGLER_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.763506	1077.51246	0.68505	0.00036977	-0.083045	-4.4825E-05	0.60201	0.00032494	539.763944643329	7.0303	0.17741	7.0303	6.9771	7.1545	0	669	46	0.875957769340875	0.0305053430673474	0.875957769340875	355.342028781821	0	12.3748322963027						645	21	5	NaN	NaN	NaN	2.0169E-05	1	6140	108.3	73.372	1	398230			17542	1136	14789	15224	17542	17542		
SIEAVHEDIR	10	Unmodified	_SIEAVHEDIR_			0	0	0	P23919	P23919	P23919	DTYMK	Thymidylate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.801477	1167.5884	1.9685	0.0011512	0.98605	0.00057664	2.9546	0.0017278	584.80202414944	4.5918	0.1596	4.5918	4.5563	4.7159	0	579	37	0.936845902828289	0.0243080216588687	0.936845902828289	379.671642959573	0	9.8512108474377						322	19	4	NaN	NaN	NaN	0.00528	1	8546	67.881	51.229	1	114380			17543	827	14790	15225	17543	17543		
SIEDLHR	7	Unmodified	_SIEDLHR_			0	0	0	Q96PY5	Q96PY5	Q96PY5	FMNL2	Formin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.227417	868.44028	-1.7193	-0.0007483	-1.1309	-0.00049219	-2.8502	-0.0012405	435.226810429981	7.2698	0.18619	7.2698	7.2255	7.4117	0	816	67	0.775960037304758	0.0450438926921323	0.775960037304758	315.731548639855	0	18.3279773606031						375	22	3	NaN	NaN	NaN	0.019864	1	1835	54.056	41.503	1	117260			17544	2600	14791	15226	17544	17544		
SIEGTADDEEEGVSPDTAIR	20	Unmodified	_SIEGTADDEEEGVSPDTAIR_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.97165	2089.92875	2.4394	0.0025516	-0.82315	-0.00086099	1.6163	0.0016906	1046.47259732032	8.547	0.088667	8.547	8.5116	8.6002	0	210	76	1.18386433251387	0.0498137386052175	1.18386433251387	477.299361602773	0	20.0834377574589						435	11	3	NaN	NaN	NaN	2.2971E-22	1	33178	146.48	125.86	1	85777			17545	1921	14792	15227	17545	17545		
SIEIPRPVDGVEVPGCGK	18	Unmodified	_SIEIPRPVDGVEVPGCGK_			0	0	1	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.999775	1907.9775	0.28862	0.00018385	-1.0785	-0.00068699	-0.78985	-0.00050314	637.333405239796	11.305	0.17738	11.305	11.225	11.403	0	723	160	0.839303037468863	0.107815807806379	0.839303037468863	507.890973266839	0	65.243032749496						1754	21	5	NaN	NaN	NaN	9.1921E-07	1	29788	148.57	117.53	1	565660			17546	850	14793	15228	17546	17546		
SIEVYSAYNNVK	12	Unmodified	_SIEVYSAYNNVK_			0	0	0	Q96S55	Q96S55	Q96S55	WRNIP1	ATPase WRNIP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.848624	1385.6827	1.7331	0.0012025	2.003	0.0013898	3.7361	0.0025923	693.850142732872	8.2721	0.08873	8.2721	8.2277	8.3164	0	441	52	1.02971785871157	0.034210897957768	1.02971785871157	416.541710598217	0	13.8390004950097						216	11	2	NaN	NaN	NaN	0.06657	1	15005	34.953	33.45	1	40490			17547	2617	14794	15229	17547	17547		
SIFDFSALK	9	Unmodified	_SIFDFSALK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.276575	1026.5386	-0.44798	-0.00023038	-0.85878	-0.00044165	-1.3068	-0.00067203	514.276279552678	15.81	0.28377	15.81	15.721	16.005	0	711	40	0.847456455381371	0.0264930907704451	0.847456455381371	343.995554847072	0	10.7539513107984						629	33	4	NaN	NaN	NaN	0.011783	1	4894	49.96	29.302	1	412500			17548	991	14795	15230	17548	17548		
SIFEMYEPSELESSHLTDQDNEIR	24	Unmodified	_SIFEMYEPSELESSHLTDQDNEIR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	957.099271	2868.27598	0.92606	0.00088633	1.0077	0.0009645	1.9338	0.0018508	957.434140112022	14.914	0.062075	14.914	14.879	14.941	0	423	28	1.04178812298108	0.0181016489291916	1.04178812298108	628.896721175018	0	10.9274308357965						117	8	4	NaN	NaN	NaN	0.00032925	1	38031	41.188	41.024	1	16706			17549	2107	14796	15231	17549	17549		
SIFGDALLIEPLDK	14	Unmodified	_SIFGDALLIEPLDK_			0	0	0	Q01970	Q01970	Q01970	PLCB3	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.924332	1529.83411	1.4856	0.0011379	0.2836	0.00021722	1.7692	0.0013551	765.924427848439	18.435	0.062073	18.435	18.399	18.461	0	276	25	1.13998907770044	0.0159787796395696	1.13998907770044	460.719114043981	0	6.45771906332345						144	8	3	NaN	NaN	NaN	0.001247	1	19442	72.846	60.828	1	44449			17550	1524	14797	15232	17550	17550		
SIFLFLDR	8	Unmodified	_SIFLFLDR_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.78711	1009.55967	-1.0854	-0.00054898	-0.5096	-0.00025775	-1.595	-0.00080673	505.786886448133	17.193	0.18621	17.193	17.14	17.326	0	684	37	0.86578508874114	0.0244229125119191	0.86578508874114	351.51361582029	0	9.91583985167716						404	22	4	NaN	NaN	NaN	0.0079735	1	4502	62.88	50.813	1	150590			17551	1696	14798	15233	17551	17551		
SIFSAVLDELK	11	Unmodified	_SIFSAVLDELK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.339904	1220.66525	0.79687	0.00048716	0.036801	2.2498E-05	0.83367	0.00050966	611.339996600759	19.392	0.21281	19.392	19.348	19.561	0	567	73	0.944945209309785	0.0485891419781381	0.944945209309785	382.759542826232	0	19.6815197184349						1046	25	5	NaN	NaN	NaN	3.3366E-05	1	10042	124.81	85.796	1	1619400			17552	922	14799	15234	17552	17552		
SIFTGLMIDPR	11	Unmodified	_SIFTGLMIDPR_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.334098	1248.65364	0.38224	0.00023903	-0.51696	-0.00032327	-0.13472	-8.4243E-05	625.334173587036	15.961	0.12414	15.961	15.908	16.032	0	486	31	0.999498404980629	0.0201699767195437	0.999498404980629	404.75538568232	0	8.16800373631469						247	15	3	NaN	NaN	NaN	0.00071255	1	10882	62.271	56.405	1	59215			17553	2200	14800	15235	17553	17553		
SIFVTCGDWDLK	12	Unmodified	_SIFVTCGDWDLK_			0	0	0	O43414	O43414	O43414	ERI3	ERI1 exoribonuclease 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.845027	1439.6755	1.2941	0.00093284	1.3763	0.00099212	2.6704	0.001925	720.846334926628	14.365	0.14185	14.365	14.32	14.462	0	456	28	1.01965166402748	0.0181241570782431	1.01965166402748	412.316872497273	0	7.3288712476903						305	17	3	NaN	NaN	NaN	0.001422	1	16662	68.49	63.662	1	79054			17554	201	14801	15236	17554	17554		
SIFYVPDMK	9	Unmodified	_SIFYVPDMK_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.27826	1098.54197	-0.10716	-5.8966E-05	-0.69129	-0.0003804	-0.79844	-0.00043937	550.278185828114	13.088	0.19515	13.088	13.008	13.203	0	654	64	0.886123392477847	0.0426837906416542	0.886123392477847	359.378953113595	0	17.3109706006334						776	23	5	NaN	NaN	NaN	0.029234	1	6665	34.781	24.693	1	319900			17555	1608	14802	15237	17555	17555		
SIGEAIQYLHSINIAHR	17	Unmodified	_SIGEAIQYLHSINIAHR_			0	0	0	P49137	P49137	P49137	MAPKAPK2	MAP kinase-activated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	641.346274	1921.01699	0.013501	8.6591E-06	-1.0287	-0.00065975	-1.0152	-0.00065109	641.345564201202	13.726	0.070942	13.726	13.7	13.77	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	543.573206685935	0	9.83042512024986						152	9	3	NaN	NaN	NaN	0.0027728	1	30089	24.164	20.659	1	43499			17556	1122	14803	15238	17556	17556		
SIGNLTQLQTLNVK	14	Unmodified	_SIGNLTQLQTLNVK_			0	0	0	Q6UWE0	Q6UWE0	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.938305	1527.86206	2.2921	0.0017533	-0.094753	-7.248E-05	2.1973	0.0016808	764.937448247854	12.848	0.07094	12.848	12.813	12.884	0	390	25	1.06389100039157	0.0160626282117899	1.06389100039157	429.969553030498	0	6.4916810746368						145	9	3	NaN	NaN	NaN	0.041314	1	19367	32.759	30.088	1	36613			17557	2087	14804	15239	17557	17557		
SIGSAVDQGNESIVAK	16	Unmodified	_SIGSAVDQGNESIVAK_			0	0	0	Q9H0H5	Q9H0H5	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.904659	1573.79476	2.3118	0.0018215	-4.3109	-0.0033966	-1.9991	-0.0015751	787.900224700442	7.2343	0.1064	7.2343	7.1723	7.2787	8.8818E-16	399	52	1.0578662689527	0.0341448654745873	1.0578662689527	427.422626117574	0	13.7959669363766						302	13	4	NaN	NaN	NaN	3.2064E-06	1	20785	81.48	71.738	1	96596			17558	2846	14805	15240	17558	17558		
SIIQSAQQDSIK	12	Unmodified	_SIIQSAQQDSIK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.354074	1316.69359	1.8028	0.0011887	-1.4563	-0.00096019	0.34658	0.00022852	659.352643114633	6.7466	0.2128	6.7466	6.6757	6.8885	0	480	67	1.00353128488872	0.0443801033988019	1.00353128488872	406.158789941413	0	17.9619403653479						626	25	4	NaN	NaN	NaN	0.00042472	1	12885	69.276	50.02	1	206270			17559	2420	14806	15241	17559	17559		
SIISMFDR	8	Unmodified	_SIISMFDR_			0	0	0	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.747127	967.479702	-1.0942	-0.0005304	-1.6198	-0.00078519	-2.714	-0.0013156	484.74592227176	13.425	0.12414	13.425	13.389	13.513	0	747	49	0.822982596624503	0.0326454272618066	0.822982596624503	334.330912825696	0	13.2619760621797						301	15	2	NaN	NaN	NaN	0.070039	1	3575	23.575	13.496	1	79909			17560	319	14807	15242	17560	17560		
SIITYVSSLYDAMPR	15	Unmodified	_SIITYVSSLYDAMPR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.627279	1714.86001	-0.82827	-0.00047429	-0.18371	-0.0001052	-1.012	-0.00057948	572.961300636457	19.561	0.062073	19.561	19.525	19.587	0	630	16	0.902373728295776	0.0101501225476944	0.902373728295776	546.500448524373	0	6.14717200972655						71	8	3	NaN	NaN	NaN	0.01836	1	24904	36.952	34.968	1	11095			17561	1816	14808	15243	17561	17561		
SILAETEGMLR	11	Unmodified	_SILAETEGMLR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.321188	1218.62782	0.37991	0.00023187	1.3258	0.00080914	1.7057	0.001041	610.320974858959	13.434	0.28377	13.434	13.247	13.531	0	591	25	0.928742107665821	0.0162098367648951	0.928742107665821	376.203340592701	0	6.56607974493835						259	33	3	NaN	NaN	NaN	0.013276	1	9983	55.235	41.961	1	57153			17562	3158	14809	15244	17562	17562		
SILALVDGQPWDMYK	15	Unmodified	_SILALVDGQPWDMYK_			0	0	0	Q9NYK5	Q9NYK5	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.439823	1734.86509	1.4235	0.0012363	-2.632	-0.0022857	-1.2084	-0.0010494	868.438134723104	18.692	0.11527	18.692	18.656	18.772	0	315	43	1.11400032671325	0.0280245115446394	1.11400032671325	449.73846623508	0	11.3139112591281						345	14	4	NaN	NaN	NaN	1.271E-11	1	25470	128.97	124.45	1	75343			17563	3116	14810	15245	17563	17563		
SILDQLDWIVNK	12	Unmodified	_SILDQLDWIVNK_			0	0	0	Q13416	Q13416	Q13416	ORC2	Origin recognition complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.395741	1442.77693	0.56084	0.00040515	-0.84684	-0.00061175	-0.286	-0.00020661	722.395283889232	19.561	0.053225	19.561	19.534	19.587	0	474	28	1.00756305028564	0.0181416924529938	1.00756305028564	407.420269230984	0	7.33581210764834						147	7	4	NaN	NaN	NaN	0.00016676	1	16755	64.906	45.582	1	35272			17564	1662	14811	15246	17564	17564		
SILDWTSFNQER	12	Unmodified	_SILDWTSFNQER_			0	0	0	P06280	P06280	P06280	GLA	Alpha-galactosidase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.36243	1494.71031	1.0957	0.00082002	2.452	0.001835	3.5477	0.002655	748.363727088211	15.402	0.23068	15.402	15.34	15.571	0	441	40	1.02971785871157	0.0261576594975734	1.02971785871157	416.241398682767	0	10.5736738305782						365	27	3	NaN	NaN	NaN	4.0043E-06	1	18374	123.42	103.24	1	100830			17565	538	14812	15247	17565	17565		
SILEIMHK	8	Unmodified	_SILEIMHK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.773145	969.531738	0.10012	4.8636E-05	-0.98782	-0.00047986	-0.8877	-0.00043122	485.772516955059	8.4584	0.18621	8.4584	8.4051	8.5914	0	714	58	0.845418525735192	0.0386991694587414	0.845418525735192	343.435162717084	0	15.7208000008292						498	22	3	NaN	NaN	NaN	0.057035	1	3626	29.102	5.5262	1	126960			17566	78	14813	15248	17566	17566		
SILGTLTVEQIYQDR	15	Unmodified	_SILGTLTVEQIYQDR_			0	0	0	Q14254	Q14254	Q14254	FLOT2	Flotillin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.464884	1734.91521	1.5364	0.0013343	-0.70656	-0.00061362	0.82981	0.00072066	868.464877407615	15.837	0.088685	15.837	15.801	15.89	0	318	28	1.11199926528787	0.0180120343234753	1.11199926528787	448.930498366867	0	7.27172382020018						178	11	3	NaN	NaN	NaN	1.4459E-08	1	25475	110.58	96.804	1	48726			17567	1743	14814	15249	17567	17567		
SILGTLTVEQIYQDRDQFAK	20	Unmodified	_SILGTLTVEQIYQDRDQFAK_			0	0	1	Q14254	Q14254	Q14254	FLOT2	Flotillin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.741018	2324.20123	0.91676	0.00071117	-1.3552	-0.0010513	-0.4384	-0.00034008	776.074439112247	15.606	0.070943	15.606	15.579	15.65	-1.7764E-15	477	31	1.0055473068722	0.0201616152840689	1.0055473068722	607.704421213717	0	12.184710419095						202	9	4	NaN	NaN	NaN	2.8596E-07	1	35853	65.12	44.831	1	43386			17568	1743	14815	15250	17568	17568		
SILLSVPLLVVDNK	14	Unmodified	_SILLSVPLLVVDNK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.466167	1508.91778	0.94147	0.00071125	0.075607	5.7118E-05	1.0171	0.00076837	755.466314596095	19.029	0.088613	19.029	18.984	19.073	0	393	157	1.0618830335572	0.10427794050659	1.0618830335572	429.206411764725	0	42.1484845850851						651	11	4	NaN	NaN	NaN	0.00023868	1	18776	93.162	74.655	1	188750			17569	1241	14816	15251	17569	17569		
SILTDNPTWIIDPIDGTTNFVHR	23	Unmodified	_SILTDNPTWIIDPIDGTTNFVHR_			0	0	0	P29218	P29218	P29218	IMPA1	Inositol monophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.781765	2624.32347	1.5999	0.0014012	-2.5661	-0.0022474	-0.96618	-0.00084617	876.11388779849	18.683	0.053198	18.683	18.656	18.71	0	351	43	1.08996939197032	0.0280670092920567	1.08996939197032	658.277426600372	0	16.9508233765586						262	7	4	NaN	NaN	NaN	1.2872E-06	1	37338	59.625	53.238	1	59978			17570	884	14817	15252	17570	17570		
SILTIPWVELGGK	13	Unmodified	_SILTIPWVELGGK_			0	0	0	Q9BXB5	Q9BXB5	Q9BXB5	OSBPL10	Oxysterol-binding protein-related protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.911027	1411.8075	0.40686	0.00028761	-2.1387	-0.0015119	-1.7318	-0.0012242	707.410267830001	18.727	0.070917	18.727	18.683	18.754	0	480	46	1.00353128488872	0.0302486975418772	1.00353128488872	405.874506429621	0	12.2339735390609						184	9	3	NaN	NaN	NaN	0.047827	1	15826	31.425	19.467	1	31334			17571	2784	14818	15253	17571	17571		
SILTLSHEPK	10	Unmodified	_SILTLSHEPK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.819138	1123.62372	2.1051	0.0011848	0.16993	9.564E-05	2.275	0.0012804	562.819145148803	6.0904	0.26601	6.0904	5.9751	6.2411	0	570	37	0.942920803299286	0.0242979231728671	0.942920803299286	382.308113818449	0	9.85161547546846						493	31	3	NaN	NaN	NaN	0.00498	1	7369	55.235	40.472	1	139890			17572	2149	14819	15254	17572	17572		
SIMGLEGEDEGAISMLSDNTAK	22	Unmodified	_SIMGLEGEDEGAISMLSDNTAK_			0	0	0	Q8WVM8	Q8WVM8	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1134.52214	2267.02973	0.47917	0.00054363	1.7016	0.0019305	2.1807	0.0024741	1134.52488647518	15.633	0.070922	15.633	15.597	15.668	0	90	46	1.26329880838669	0.0297165117023155	1.26329880838669	509.062283006238	0	11.9746454201766						196	9	3	NaN	NaN	NaN	0.040024	1	35340	30.172	25.339	1	33431			17573	2381	14820	15255	17573	17573		
SINDNIAIFTEVQK	14	Unmodified	_SINDNIAIFTEVQK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.419945	1590.82534	1.4484	0.0011535	0.37855	0.00030149	1.827	0.001455	796.420564139426	14.072	0.18622	14.072	14.019	14.205	0	378	34	1.07192009927972	0.0220754584082121	1.07192009927972	433.0605058274	0	8.91858375550186						345	22	3	NaN	NaN	NaN	0.032999	1	21302	38.14	28.398	1	140780			17574	1567	14821	15256	17574	17574		
SINNDTTYCIK	11	Unmodified	_SINNDTTYCIK_			0	0	0	Q53H82	Q53H82	Q53H82	LACTB2	Beta-lactamase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.811184	1327.60782	1.963	0.001305	0.37743	0.00025092	2.3404	0.0015559	664.811615083973	5.7268	0.20394	5.7268	5.6825	5.8864	0	534	43	0.967195187796614	0.0283005258697965	0.967195187796614	391.419068324602	0	11.4530816621282						299	24	3	NaN	NaN	NaN	0.0051651	1	13201	44.57	39.074	1	99297			17575	1951	14822	15257	17575	17575		
SINPDEAVAYGAAVQAAILMGDK	23	Unmodified	_SINPDEAVAYGAAVQAAILMGDK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1152.58065	2303.14675	0.49321	0.00056846	0.40943	0.0004719	0.90264	0.0010404	1153.08284149864	19.481	0.22168	19.481	19.41	19.632	0	81	91	1.2692388538616	0.0594208596978292	1.2692388538616	511.407038120566	0	23.9421018102224						1525	26	6	NaN	NaN	NaN	1.2652E-17	1	35665	137.56	132.97	1	553370			17576	618	14823	15258	17576	17576		
SINPDEAVAYGAAVQAAILMGDK	23	Unmodified	_SINPDEAVAYGAAVQAAILMGDK_			0	0	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.722859	2303.14675	1.6872	0.001297	-0.30213	-0.00023226	1.3851	0.0010647	769.057066326766	19.481	0.18621	19.481	19.41	19.596	0	369	58	1.07793901817685	0.0381250913283928	1.07793901817685	651.489854457652	0	23.042222038431						898	22	6	NaN	NaN	NaN	1.6801E-09	1	35666	156.96	149.31	1	433220			17577	618	14823	15258	17577	17577		
SINPDEAVAYGAAVQAAILMGDK	23	Oxidation (M)	_SINPDEAVAYGAAVQAAILM(Oxidation (M))GDK_	SINPDEAVAYGAAVQAAILM(1)GDK	SINPDEAVAYGAAVQAAILM(62)GDK	0	1	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1160.57811	2319.14166	0.26755	0.00031051	-1.2819	-0.0014877	-1.0143	-0.0011772	1161.07857811467	18.648	0.12414	18.648	18.594	18.718	0	66	70	1.27913350869533	0.0455403764010889	1.27913350869533	515.372517786716	0	18.3485604022076						760	15	5	NaN	NaN	NaN	0.00047127	1	35806	61.745	59.775	1	203550			17578	618	14823	15259	17578	17578	172	
SINPDEAVAYGAAVQAAILMGDK	23	Oxidation (M)	_SINPDEAVAYGAAVQAAILM(Oxidation (M))GDK_	SINPDEAVAYGAAVQAAILM(1)GDK	SINPDEAVAYGAAVQAAILM(87)GDK	0	1	0	P0DMV8;P0DMV9	P0DMV8	P0DMV8	HSPA1A;HSPA1B	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.054497	2319.14166	1.1269	0.00087231	-0.48168	-0.00037285	0.64526	0.00049947	774.388295495692	18.656	0.14187	18.656	18.577	18.718	0	378	37	1.07192009927972	0.0240839792188599	1.07192009927972	647.825334813759	0	14.5553870214669						537	17	6	NaN	NaN	NaN	0.00057734	1	35807	86.766	84.665	1	194650			17579	618	14823	15259	17579	17579	172	
SINPDEAVAYGAAVQAAILSGDK	23	Unmodified	_SINPDEAVAYGAAVQAAILSGDK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1130.57642	2259.13829	0.29335	0.00033165	-5.0391	-0.005697	-4.7457	-0.0053654	1131.57309420086	19.915	0.04433	19.915	19.898	19.942	0	84	43	1.26725910986255	0.0277145246283468	1.26725910986255	510.669024928174	0	11.1681574495374						164	6	4	NaN	NaN	NaN	0.019878	1	35265	33.63	18.681	1	29110			17580	640	14824	15260	17580	17580		
SINPDEAVAYGAAVQAAILSGDK	23	Unmodified	_SINPDEAVAYGAAVQAAILSGDK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.053373	2259.13829	1.2302	0.00092767	-0.38764	-0.0002923	0.8426	0.00063536	754.387724556329	18.736	0.25712	18.736	18.63	18.887	0	387	118	1.06589869032374	0.0783648776971209	1.06589869032374	644.288064850715	0	47.3680621451989						1815	30	6	NaN	NaN	NaN	6.4141E-13	1	35267	206.73	202.66	1	1453800			17581	640	14824	15260	17581	17581		
SINPDEAVAYGAAVQAAILSGDK	23	Unmodified	_SINPDEAVAYGAAVQAAILSGDK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1130.57642	2259.13829	1.0535	0.0011911	0.54301	0.00061391	1.5965	0.001805	1131.07848960214	18.745	0.39012	18.745	18.621	19.011	0	84	100	1.26725910986255	0.0653763919963806	1.26725910986255	510.669007486216	0	26.3448074304571						2924	45	7	NaN	NaN	NaN	1.7712E-41	1	35269	176.42	165.77	1	2339500			17582	640	14824	15260	17582	17582		
SINPLGGFVHYGEVTNDFVMLK	22	Unmodified	_SINPLGGFVHYGEVTNDFVMLK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.078866	2436.21477	0.80137	0.00065157	-0.70796	-0.00057563	0.093405	7.5946E-05	813.412657864791	18.169	0.15075	18.169	18.115	18.266	0	537	124	0.965173861991602	0.0828401322086614	0.965173861991602	583.145330034742	0	50.0509163574529						1634	18	6	NaN	NaN	NaN	3.3946E-08	1	36507	100.36	96.201	1	777190			17583	1010	14825	15261	17583	17583		
SINPLGGFVHYGEVTNDFVMLK	22	Oxidation (M)	_SINPLGGFVHYGEVTNDFVM(Oxidation (M))LK_	SINPLGGFVHYGEVTNDFVM(1)LK	SINPLGGFVHYGEVTNDFVM(90)LK	0	1	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.410504	2452.20968	0.22092	0.0001808	0.019693	1.6117E-05	0.24061	0.00019692	818.744943431171	17.291	0.15077	17.291	17.22	17.371	0	495	118	0.993446994398923	0.0786358665225724	0.993446994398923	600.205382483293	0	47.5089970669671						1405	18	6	NaN	NaN	NaN	5.3706E-08	1	36589	89.636	80.505	1	452770			17584	1010	14825	15262	17584	17584	366	
SINSILDYISTSK	13	Unmodified	_SINSILDYISTSK_			0	0	0	P61201	P61201	P61201	COPS2	COP9 signalosome complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.882664	1439.75077	0.9838	0.0007092	1.2336	0.00088932	2.2174	0.0015985	720.884142695903	16.555	0.17734	16.555	16.493	16.67	0	465	70	1.01360860968299	0.0463237128819054	1.01360860968299	409.873037278809	0	18.7319254350812						595	21	3	NaN	NaN	NaN	0.0013298	1	16672	74.524	52.129	1	217610			17585	1333	14826	15263	17585	17585		
SIPAGAEPGEK	11	Unmodified	_SIPAGAEPGEK_			0	0	0	Q9H910	Q9H910	Q9H910	HN1L	Hematological and neurological expressed 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.272021	1054.52949	1.0575	0.00055865	-1.0403	-0.00054957	0.017197	9.0845E-06	528.271387884225	3.2971	0.20393	3.2971	3.2173	3.4213	0	705	43	0.851531465363931	0.0285171523419938	0.851531465363931	345.528247233258	0	11.5714827526681						325	24	2	NaN	NaN	NaN	0.016639	1	5579	22.898	12.81	1	69029			17586	2929	14827	15264	17586	17586		
SIPAYLAETLYYAMK	15	Unmodified	_SIPAYLAETLYYAMK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.444574	1732.8746	1.44	0.0012491	-0.74697	-0.00064796	0.69302	0.00060115	867.94562605664	19.889	0.09752	19.889	19.827	19.924	0	204	55	1.18784641916898	0.0358535635982185	1.18784641916898	479.555589205747	0	14.4747473570685						265	12	4	NaN	NaN	NaN	0.0052167	1	25407	27.378	20.631	1	47597			17587	591	14828	15265	17587	17587		
SIPAYLAETLYYAMK	15	Unmodified	_SIPAYLAETLYYAMK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.444574	1732.8746	2.0457	0.0017745	-0.93445	-0.00081058	1.1113	0.00096396	867.444108380615	19.889	0.17734	19.889	19.782	19.96	0	315	88	1.11400032671325	0.0579749521593755	1.11400032671325	449.742555289135	0	23.4055614721867						929	21	5	NaN	NaN	NaN	0.0049928	1	25408	55.578	46.825	1	399070			17588	591	14828	15265	17588	17588		
SIPAYLAETLYYAMK	15	Oxidation (M)	_SIPAYLAETLYYAM(Oxidation (M))K_	SIPAYLAETLYYAM(1)K	SIPAYLAETLYYAM(61)K	0	1	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.442031	1748.86951	1.4315	0.0012532	1.4678	0.001285	2.8993	0.0025382	875.443537922645	17.495	0.24829	17.495	17.344	17.592	0	198	37	1.1918274123006	0.0238794042896202	1.1918274123006	481.127856137902	0	9.63985764477241						407	29	3	NaN	NaN	NaN	0.00032112	1	25857	61.194	54.339	1	104060			17589	591	14828	15266	17589	17589	159	
SIQADGLVWGSSK	13	Unmodified	_SIQADGLVWGSSK_			0	0	0	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.348791	1346.68303	1.147	0.00077347	-0.4441	-0.00029948	0.70289	0.000474	674.348863145422	10.268	0.10642	10.268	10.223	10.33	0	468	37	1.01159370163332	0.024180571015918	1.01159370163332	409.327187789482	0	9.78432854723053						160	13	2	NaN	NaN	NaN	0.043967	1	13806	48.822	33.674	1	60720			17590	829	14829	15267	17590	17590		
SIQEIQELDK	10	Unmodified	_SIQEIQELDK_			0	0	0	P52565	P52565	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.816793	1201.61903	1.4157	0.000852	0.8217	0.00049451	2.2374	0.0013465	601.817489564325	8.0502	0.17749	8.0502	7.9793	8.1567	0	600	46	0.922661313351899	0.030408192841195	0.922661313351899	373.799448862503	0	12.3193262364608						612	21	4	NaN	NaN	NaN	4.699E-10	1	9511	183.13	122.24	1	608010			17591	1214	14830	15268	17591	17591		
SIQEIQELDKDDESLR	16	Unmodified	_SIQEIQELDKDDESLR_			0	0	1	P52565	P52565	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.984848	1916.93271	0.58753	0.00037601	0.57135	0.00036565	1.1589	0.00074166	639.984989625002	9.6558	0.06207	9.6558	9.6381	9.7002	0	624	55	0.906433495720521	0.0365531253994683	0.906433495720521	548.495421560522	0	22.1188007945349						225	8	3	NaN	NaN	NaN	0.035247	1	29991	39.82	31.014	1	48488			17592	1214	14831	15269	17592	17592		
SIQEIQELDKDDESLRK	17	Unmodified	_SIQEIQELDKDDESLRK_			0	0	2	P52565	P52565	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.683169	2045.02768	1.4744	0.0010065	0.54061	0.00036907	2.015	0.0013756	683.017772420554	8.0237	0.088902	8.0237	7.9881	8.077	0	573	19	0.940896116921038	0.0121489600135238	0.940896116921038	569.093122313004	0	7.34819653584816						170	11	4	NaN	NaN	NaN	0.015638	1	32444	35.246	30.939	1	47797			17593	1214	14832	15270	17593	17593		
SIQFVDWCPTGFK	13	Unmodified	_SIQFVDWCPTGFK_			0	0	0	P68363;P68366	P68363;P68366	P68363	TUBA1B;TUBA4A	Tubulin alpha-1B chain;Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.879401	1583.74425	0.97688	0.00077455	-3.7253	-0.0029537	-2.7484	-0.0021791	793.376626250174	16.067	0.11527	16.067	16.014	16.129	0	408	10	1.0518390438467	0.00602805667242357	1.0518390438467	424.964082573462	0	2.43545586987227						48	14	2	NaN	NaN	NaN	0.0061234	1	21074	40.861	31.346	1	11528			17594	1447;1448	14833	15271	17594	17594		
SIQLDGLVWGASK	13	Unmodified	_SIQLDGLVWGASK_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.374809	1372.73507	1.3057	0.00089751	-1.3089	-0.00089969	-0.0031632	-2.1743E-06	687.37366612929	14.489	0.11528	14.489	14.418	14.533	0	447	43	1.02569221487577	0.0281834048046041	1.02569221487577	414.951930140184	0	11.401820206863						233	14	3	NaN	NaN	NaN	0.002595	1	14587	44.598	32.64	1	49941			17595	890	14834	15272	17595	17595		
SIQLDGLVWGASK	13	Unmodified	_SIQLDGLVWGASK_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.374809	1372.73507	1.2918	0.00088798	0.68786	0.00047282	1.9797	0.0013608	687.375687707183	15.074	0.28377	15.074	14.959	15.242	0	486	118	0.999498404980629	0.0785489973658715	0.999498404980629	404.35500829066	0	31.7776199770079						1649	33	5	NaN	NaN	NaN	2.2841E-07	1	14589	104.04	84.718	1	877390			17596	890	14834	15272	17596	17596		
SISDMWTMVK	10	Unmodified	_SISDMWTMVK_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.28576	1196.55697	0.014533	8.7091E-06	-2.4041	-0.0014407	-2.3895	-0.001432	599.284497978237	14.4	0.13297	14.4	14.347	14.48	-1.7764E-15	624	40	0.906433495720521	0.026386663985959	0.906433495720521	367.242694659924	0	10.6905907946251						479	16	5	NaN	NaN	NaN	0.0092271	1	9335	65.404	59.141	1	157810			17597	2239	14835	15273	17597	17597		
SISFHPSGDFILVGTQHPTLR	21	Unmodified	_SISFHPSGDFILVGTQHPTLR_			0	0	0	Q05048	Q05048	Q05048	CSTF1	Cleavage stimulation factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.406081	2308.19641	1.4607	0.0011253	0.40693	0.0003135	1.8676	0.0014388	770.740941691143	13.185	0.088688	13.185	13.15	13.238	0	426	31	1.03977710643793	0.0201143318791703	1.03977710643793	628.417136960439	0	12.1566350837279						249	11	5	NaN	NaN	NaN	6.7135E-06	1	35706	54.261	49.663	1	68983			17598	1548	14836	15274	17598	17598		
SISITSALLTEK	12	Unmodified	_SISITSALLTEK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.863743	1261.71293	0.73373	0.00046362	-4.2378	-0.0026777	-3.5041	-0.0022141	631.860474733952	13.221	0.10641	13.221	13.185	13.292	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	396.537984925047	0	8.17724901006028						177	13	3	NaN	NaN	NaN	0.025008	1	11282	34.193	27.929	1	47189			17599	914	14837	15275	17599	17599		
SISLLCLEGLQK	12	Unmodified	_SISLLCLEGLQK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.87887	1359.74319	0.79631	0.00054219	-0.41877	-0.00028513	0.37754	0.00025706	680.879123050407	15.145	0.097554	15.145	15.101	15.198	0	492	31	0.995464410099171	0.0201727650206149	0.995464410099171	402.761390846653	0	8.16182960887187						226	12	3	NaN	NaN	NaN	0.00073499	1	14206	68.49	39.844	1	68582			17600	3067	14838	15276	17600	17600		
SISLPSLDLVSAK	13	Unmodified	_SISLPSLDLVSAK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.384842	1328.75513	1.0207	0.00067914	-2.1473	-0.0014288	-1.1266	-0.00074963	665.383814483639	15.588	0.20395	15.588	15.491	15.695	0	510	49	0.983355730988811	0.0322987503458569	0.983355730988811	397.955630152202	0	13.0710272406602						548	24	4	NaN	NaN	NaN	0.0051776	1	13259	47.361	34.765	1	210510		+	17601	22	14839	15277	17601	17601		
SISLYYTGEK	10	Unmodified	_SISLYYTGEK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.795329	1159.5761	0.95136	0.00055255	1.7384	0.0010096	2.6897	0.0015622	580.796434258438	8.5648	0.33717	8.5648	8.4406	8.7778	0	615	61	0.912521036363781	0.0405639373344322	0.912521036363781	369.843434525263	0	16.4405041678986						798	39	3	NaN	NaN	NaN	5.8664E-05	1	8339	74.269	54.035	1	763260			17602	764	14840	15278	17602	17602		
SISSDEVNFLVYR	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SISSDEVNFLVYR_			1	0	0	Q9BZK7	Q9BZK7	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.89102	1569.76749	1.3711	0.0010776	1.1801	0.00092742	2.5512	0.002005	785.891171004396	17.761	0.070927	17.761	17.725	17.796	0	363	34	1.08195024817156	0.0220632885593353	1.08195024817156	437.163331356936	0	8.91469893702447						173	9	3	NaN	NaN	NaN	1.9704E-07	1	20653	94.66	85.145	1	34320			17603	2814	14841	15279	17603	17603		
SISSPSVSSETMDK	14	Unmodified	_SISSPSVSSETMDK_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.837596	1453.66064	1.967	0.0014317	-1.1656	-0.00084838	0.80138	0.00058328	727.836802450346	5.7623	0.15072	5.7623	5.7091	5.8598	0	483	34	1.00151498427745	0.0221823754430851	1.00151498427745	404.945865063153	0	8.96907320806224						223	18	3	NaN	NaN	NaN	0.057903	1	17069	17.415	8.9409	1	61671			17604	1151	14842	15280	17604	17604		
SITHDIEEK	9	Unmodified	_SITHDIEEK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.269478	1070.5244	1.7478	0.0009373	-0.23835	-0.00012782	1.5095	0.00080948	536.269287291484	3.1109	0.18621	3.1109	3.0843	3.2705	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	359.495446019877	0	8.24541595790737						283	22	3	NaN	NaN	NaN	0.00091058	1	5968	86.205	54.253	1	72457			17605	3215	14843	15281	17605	17605		
SITILSTPEGTSAACK	16	Unmodified	_SITILSTPEGTSAACK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.416545	1634.81854	1.9467	0.0015932	-1.2359	-0.0010115	0.71081	0.00058173	818.416469121944	9.4962	0.2394	9.4962	9.4253	9.6647	0	360	58	1.08395544855938	0.0380883241812764	1.08395544855938	437.8211231487	0	15.3842788410363						711	28	5	NaN	NaN	NaN	0.00020844	1	22624	78.864	76.88	1	281840			17606	78	14844	15282	17606	17606		
SITTDDWK	8	Unmodified	_SITTDDWK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.232364	964.450176	-0.89901	-0.00043443	0.87389	0.00042229	-0.02512	-1.2139E-05	483.232881937228	5.8421	0.14185	5.8421	5.7978	5.9396	0	768	46	0.808687310729125	0.0306455477926374	0.808687310729125	328.538001486286	0	12.4500865695146						334	17	3	NaN	NaN	NaN	0.047806	1	3522	41.025	32.262	1	87906			17607	614	14845	15283	17607	17607		
SITVLVEGENTR	12	Unmodified	_SITVLVEGENTR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.354074	1316.69359	1.3765	0.0009076	-1.8994	-0.0012524	-0.52289	-0.00034477	659.35272419227	8.769	0.28402	8.769	8.7156	8.9996	0	495	70	0.993446994398923	0.0463749432889504	0.993446994398923	402.07738119534	0	18.7693111518097						659	33	3	NaN	NaN	NaN	5.4002E-05	1	12884	123.42	116.27	1	181810			17608	952	14846	15284	17608	17608		
SIVDNWPENHVK	12	Unmodified	_SIVDNWPENHVK_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.908886	1436.70483	-1.4205	-0.00068173	-0.81736	-0.00039226	-2.2379	-0.001074	479.908699732843	7.5447	0.079808	7.5447	7.5181	7.5979	0	867	37	0.741107305531458	0.0246242241429218	0.741107305531458	449.528552211005	0	14.9361526268439						159	10	2	NaN	NaN	NaN	0.064741	1	16582	14.455	11.11	1	38331			17609	817	14847	15285	17609	17609		
SIVEEIEDLVAR	12	Unmodified	_SIVEEIEDLVAR_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.869556	1371.72456	0.95244	0.0006542	-0.67645	-0.00046463	0.276	0.00018957	686.869133545623	19.845	0.088678	19.845	19.818	19.907	0	495	37	0.993446994398923	0.0242106659523326	0.993446994398923	401.909819567924	0	9.79468903663917						316	11	5	NaN	NaN	NaN	2.9644E-11	1	14546	151.22	125.36	1	219400			17610	519	14848	15286	17610	17610		
SIVEHVASK	9	Unmodified	_SIVEHVASK_			0	0	0	P78330	P78330	P78330	PSPH	Phosphoserine phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.271824	968.529095	0.82243	0.0003991	0.7986	0.00038754	1.621	0.00078664	485.272192029742	2.7385	0.12412	2.7385	2.7208	2.8449	0	735	25	0.831145085810763	0.0163204408443606	0.831145085810763	337.641729041658	0	6.62996384083374						138	15	2	NaN	NaN	NaN	0.034796	1	3601	46.447	35.619	1	27908			17611	1456	14849	15287	17611	17611		
SIVTDLVSQMDPHGR	15	Unmodified	_SIVTDLVSQMDPHGR_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.278761	1653.81445	-0.34011	-0.00018783	-1.5714	-0.00086784	-1.9115	-0.0010557	552.278191997283	15.42	0.18633	15.42	15.34	15.526	-1.7764E-15	687	46	0.863749705078866	0.0305392436056822	0.863749705078866	523.263368854962	0	18.5008080436132						590	22	4	NaN	NaN	NaN	0.001814	1	23157	61.194	59.21	1	165030			17612	255	14850	15288	17612	17612		
SIVTDLVSQMDPHGR	15	Unmodified	_SIVTDLVSQMDPHGR_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.914504	1653.81445	2.2615	0.0018724	-0.57941	-0.0004797	1.6821	0.0013927	827.913959015675	15.393	0.21294	15.393	15.322	15.535	0	315	64	1.11400032671325	0.0419991790734675	1.11400032671325	449.913135349512	0	16.9622771968121						574	25	4	NaN	NaN	NaN	4.2419E-07	1	23160	97.594	86.807	1	125580			17613	255	14850	15288	17613	17613		
SIYGERFPDENFK	13	Unmodified	_SIYGERFPDENFK_			0	0	1	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.591334	1600.75217	-0.56636	-0.00030277	-0.41303	-0.0002208	-0.9794	-0.00052358	534.591089549295	9.0972	0.15961	9.0972	9.0174	9.177	0	738	58	0.829104889055312	0.0387799269101239	0.829104889055312	502.413515896651	0	23.4995109573292						357	19	2	NaN	NaN	NaN	0.04377	1	21599	22.004	20.747	1	100830			17614	816	14851	15289	17614	17614		
SIYNLNEDEELTHYGQSLADIEK	23	Unmodified	_SIYNLNEDEELTHYGQSLADIEK_			0	0	0	P78316	P78316	P78316	NOP14	Nucleolar protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	894.424083	2680.25042	0.5754	0.00051465	1.7019	0.0015222	2.2773	0.0020368	894.759600508028	14.87	0.070901	14.87	14.843	14.914	-1.7764E-15	468	52	1.01159370163332	0.0342581813626666	1.01159370163332	610.875931356086	0	20.6876519819123						405	9	5	NaN	NaN	NaN	0.00070524	1	37545	39.483	38.057	1	99884			17615	1455	14852	15290	17615	17615		
SIYVGNVDYGATAEELEAHFHGCGSVNR	28	Unmodified	_SIYVGNVDYGATAEELEAHFHGCGSVNR_			0	0	0	Q86U42	Q86U42	Q86U42	PABPN1	Polyadenylate-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	763.851801	3051.3781	1.1502	0.00087858	0.017341	1.3246E-05	1.1675	0.00089183	764.102768845207	14.435	0.15074	14.435	14.391	14.542	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	801.010010074033	0	12.985766927443						366	18	6	NaN	NaN	NaN	4.7056E-07	1	38291	37.242	37.138	1	89475			17616	2161	14853	15291	17616	17616		
SIYYITGESK	10	Unmodified	_SIYYITGESK_			0	0	0	P08238;Q58FF8	P08238;Q58FF8	P08238	HSP90AB1;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.795329	1159.5761	1.1424	0.00066351	1.4142	0.00082139	2.5567	0.0014849	580.796012501149	7.5801	0.51442	7.5801	7.5003	8.0148	0	609	67	0.916577990479294	0.0446265209957717	0.916577990479294	371.487713481808	0	18.0870634223915						1422	59	4	NaN	NaN	NaN	4.2576E-05	1	8338	95.311	83.244	1	2316000			17617	579;1959	14854	15292	17617	17617		
SKDDQVTVIGAGVTLHEALAAAELLK	26	Unmodified	_SKDDQVTVIGAGVTLHEALAAAELLK_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	663.1169	2648.4385	0.07902	5.24E-05	0.029617	1.964E-05	0.10864	7.2039E-05	663.367507014444	18.816	0.23052	18.816	18.727	18.958	0	561	37	0.948993180460448	0.0242878309785073	0.948993180460448	764.143255080731	0	19.5569184319767						599	27	6	NaN	NaN	NaN	5.2505E-06	1	37430	78.359	71.222	1	275730			17618	888	14855	15293	17618	17618		
SKDDQVTVIGAGVTLHEALAAAELLK	26	Unmodified	_SKDDQVTVIGAGVTLHEALAAAELLK_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.820108	2648.4385	0.85215	0.00075314	-0.5456	-0.00048222	0.30654	0.00027093	884.154479012874	18.816	0.053217	18.816	18.789	18.843	0	441	40	1.02971785871157	0.0261612711685622	1.02971785871157	621.859200570113	0	15.7991114140101						168	7	4	NaN	NaN	NaN	0.059406	1	37431	9.9197	9.9197	1	32013			17619	888	14855	15293	17619	17619		
SKDDQVTVIGAGVTLHEALAAAELLK	26	Unmodified	_SKDDQVTVIGAGVTLHEALAAAELLK_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	883.820108	2648.4385	1.704	0.001506	-0.25258	-0.00022323	1.4514	0.0012828	884.154230892741	18.816	0.10639	18.816	18.781	18.887	0	264	118	1.14797626962532	0.0780093120790197	1.14797626962532	693.276899268695	0	47.110776958724						986	13	5	NaN	NaN	NaN	1.2769E-18	1	37432	113.61	111.29	1	254840			17620	888	14855	15293	17620	17620		
SLADELALVDVLEDK	15	Unmodified	_SLADELALVDVLEDK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.957571	1628.85088	-1.0147	-0.00055194	0.69792	0.00037964	-0.31675	-0.0001723	544.292231058389	19.543	0.044332	19.543	19.525	19.57	0	669	16	0.875957769340875	0.0101698567329617	0.875957769340875	530.726539044405	0	6.16172726057732						69	6	3	NaN	NaN	NaN	0.010116	1	22443	46.068	36.326	1	13036			17621	553	14856	15294	17621	17621		
SLADELALVDVLEDK	15	Unmodified	_SLADELALVDVLEDK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.432718	1628.85088	1.3567	0.0011063	0.13174	0.00010742	1.4885	0.0012137	815.934267349388	19.472	0.044334	19.472	19.446	19.49	0	345	7	1.09397730668811	0.00400736257125267	1.09397730668811	441.882656026778	0	1.61866613303732						23	6	2	NaN	NaN	NaN	0.0020034	1	22444	66.953	60.577	1	4102.9			17622	553	14856	15294	17622	17622		
SLADELALVDVLEDK	15	Unmodified	_SLADELALVDVLEDK_			0	0	0	P07195	P07195	P07195	LDHB	L-lactate dehydrogenase B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.432718	1628.85088	2.2085	0.0018009	0.74836	0.00061024	2.9568	0.0024111	815.433633958019	19.552	0.36355	19.552	19.446	19.809	0	354	283	1.08796502040166	0.187649347729071	1.08796502040166	439.454152693266	0	75.7958974446431						2741	42	5	NaN	NaN	NaN	1.387E-24	1	22445	209.43	167.37	1	3802900			17623	553	14856	15294	17623	17623		
SLADLPNFTPFPDEWTVEDK	20	Unmodified	_SLADLPNFTPFPDEWTVEDK_			0	0	0	Q9UKL0;Q9P2K3	Q9UKL0	Q9UKL0	RCOR1;RCOR3	REST corepressor 1;REST corepressor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.05225	2320.08994	-0.20396	-0.00023681	1.3172	0.0015294	1.1133	0.0012926	1161.55494893132	19.277	0.0532	19.277	19.259	19.312	0	114	25	1.24744674793813	0.0158607512262854	1.24744674793813	502.604451821567	0	6.39040038281513						116	7	3	NaN	NaN	NaN	0.022888	1	35815	43.518	41.129	1	23054			17624	3265	14857	15295	17624	17624		
SLAEACSDGDVNAVR	15	Unmodified	_SLAEACSDGDVNAVR_			0	0	0	Q8IWZ3	Q8IWZ3	Q8IWZ3	ANKHD1	Ankyrin repeat and KH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.357019	1562.69948	2.0378	0.0015943	-1.0588	-0.00082837	0.979	0.00076592	782.356398791881	5.7978	0.079784	5.7978	5.7623	5.8421	0	453	37	1.02166545906632	0.0241638758474618	1.02166545906632	412.82152174302	0	9.76383013640776						229	10	4	NaN	NaN	NaN	3.7068E-08	1	20426	95.138	92.035	1	57220			17625	2207	14858	15296	17625	17625		
SLAEACSEGDVNAVR	15	Unmodified	_SLAEACSEGDVNAVR_			0	0	0	O75179	O75179	O75179	ANKRD17	Ankyrin repeat domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.364844	1576.71513	2.4929	0.0019678	-1.4277	-0.001127	1.0652	0.00084085	789.365331488845	6.0372	0.12414	6.0372	6.0017	6.1259	0	450	34	1.02367897599655	0.0221456308390058	1.02367897599655	413.602824309283	0	8.94762486667935						244	15	3	NaN	NaN	NaN	7.0255E-09	1	20867	147.72	126.57	1	55396			17626	311	14859	15297	17626	17626		
SLAEDFAEQPIK	12	Unmodified	_SLAEDFAEQPIK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.343175	1346.6718	1.6076	0.001084	-0.42114	-0.00028399	1.1864	0.00080005	674.343443831496	10.649	0.34586	10.649	10.454	10.8	0	516	85	0.979317271586824	0.0565072196831565	0.979317271586824	396.267017045259	0	22.8648549709361						866	40	4	NaN	NaN	NaN	1.6597E-05	1	13804	132.39	97.61	1	417520			17627	3410	14860	15298	17627	17627		
SLAEEYGLDTINK	13	Unmodified	_SLAEEYGLDTINK_			0	0	0	Q13564	Q13564	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.864471	1451.71439	1.9748	0.0014354	0.48092	0.00034957	2.4557	0.001785	726.864334566248	10.897	0.19512	10.897	10.853	11.048	0	432	43	1.035754240522	0.0281717327026458	1.035754240522	418.795223236887	0	11.3909136208107						380	23	4	NaN	NaN	NaN	0.0038147	1	17030	46.068	33.486	1	111720			17628	1685	14861	15299	17628	17628		
SLAEGNLLYQPQLDTLK	17	Unmodified	_SLAEGNLLYQPQLDTLK_			0	0	0	Q9H9H4	Q9H9H4	Q9H9H4	VPS37B	Vacuolar protein sorting-associated protein 37B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.012198	1902.00984	1.6033	0.0015263	-0.22775	-0.00021682	1.3755	0.0013095	952.513797969303	14.648	0.079797	14.648	14.613	14.693	0	183	31	1.20177511391933	0.0198913087124573	1.20177511391933	484.836308755875	0	8.02481976933217						227	10	4	NaN	NaN	NaN	3.9174E-10	1	29649	139.7	131.74	1	56368			17629	2936	14862	15300	17629	17629		
SLAEGYFDAAGR	12	Unmodified	_SLAEGYFDAAGR_			0	0	0	O43813	O43813	O43813	LANCL1	LanC-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.798934	1255.58332	1.3388	0.00084183	1.3596	0.00085489	2.6984	0.0016967	628.799144617903	9.6204	0.19508	9.6204	9.5583	9.7534	0	555	37	0.953040030838688	0.0242777450705638	0.953040030838688	385.918367894123	0	9.83088585013218						407	23	4	NaN	NaN	NaN	2.4121E-05	1	11079	78.932	59.676	1	145570			17630	233	14863	15301	17630	17630		
SLAGSSGPGASSGTSGDHGELVVR	24	Unmodified	_SLAGSSGPGASSGTSGDHGELVVR_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.02763	2184.0407	2.439	0.0026659	-1.4249	-0.0015575	1.0141	0.0011084	1093.5274211366	6.0461	0.097549	6.0461	6.0106	6.1081	0	129	145	1.23753038177212	0.0952038944233431	1.23753038177212	498.794001646231	0	38.3724974927274						1081	12	4	NaN	NaN	NaN	1.0136E-09	1	34505	102.1	99.029	1	265950			17631	890	14864	15302	17631	17631		
SLAGSSGPGASSGTSGDHGELVVR	24	Unmodified	_SLAGSSGPGASSGTSGDHGELVVR_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.020844	2184.0407	2.3498	0.0017131	-0.019108	-1.393E-05	2.3307	0.0016991	729.355373625559	6.055	0.23942	6.055	5.9929	6.2323	0	492	220	0.995464410099171	0.147762119619482	0.995464410099171	601.840043044099	0	89.3343443822539						2432	28	5	NaN	NaN	NaN	4.8021E-18	1	34507	186.56	173.7	1	1004500			17632	890	14864	15302	17632	17632		
SLAMLGSSEDNTALSR	16	Unmodified	_SLAMLGSSEDNTALSR_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.401426	1650.7883	2.4456	0.002021	-2.5217	-0.002084	-0.076162	-6.294E-05	826.40127755378	10.356	0.15075	10.356	10.294	10.445	0	363	43	1.08195024817156	0.0280786163643747	1.08195024817156	436.975679804137	0	11.3403296450252						343	18	4	NaN	NaN	NaN	7.1413E-07	1	23069	102.03	67.076	1	81681			17633	1689	14865	15303	17633	17633		
SLAPSIHGHDYVK	13	Unmodified	_SLAPSIHGHDYVK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.249131	1422.72556	-0.52863	-0.00025123	0.7866	0.00037383	0.25797	0.0001226	475.24939200077	4.8312	0.1862	4.8312	4.778	4.9642	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	485.606884417679	0	12.40123095967						405	22	4	NaN	NaN	NaN	0.0040269	1	16173	63.212	55.654	1	182960			17634	835	14866	15304	17634	17634		
SLAPSIHGHDYVK	13	Unmodified	_SLAPSIHGHDYVK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.370058	1422.72556	2.774	0.0019761	-2.2543	-0.0016059	0.51969	0.00037021	712.368486276537	4.8312	0.12416	4.8312	4.7869	4.911	0	438	43	1.03173026378327	0.0281756225975058	1.03173026378327	417.248414131969	0	11.3946777163258						315	15	4	NaN	NaN	NaN	4.2991E-06	1	16174	119.94	104.79	1	81208			17635	835	14866	15304	17635	17635		
SLASDITDEQK	11	Unmodified	_SLASDITDEQK_			0	0	0	P16083	P16083	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.796057	1205.57756	1.414	0.00085377	5.3544	0.003233	6.7684	0.0040868	603.79931291068	6.6934	0.38127	6.6934	6.5427	6.9239	0	585	76	0.932794566565362	0.0506522651893861	0.932794566565362	377.89064454489	0	20.5200778672574						1119	44	4	NaN	NaN	NaN	0.0023271	1	9617	67.881	9.9928	1	547200			17636	722	14867	15305	17636	17636		
SLAYLTAATHGLDEEAESLK	20	Unmodified	_SLAYLTAATHGLDEEAESLK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.03132	2118.04808	-0.71942	-0.00076261	1.0912	0.0011567	0.37177	0.00039409	1060.53356881884	14.764	0.053208	14.764	14.746	14.799	0	57	31	1.28506705146927	0.0197798317073412	1.28506705146927	518.05591737401	0	7.97394879040303						130	7	3	NaN	NaN	NaN	9.3916E-08	1	33591	91.457	80.248	1	24134			17637	1241	14868	15306	17637	17637		
SLAYLTAATHGLDEEAESLK	20	Unmodified	_SLAYLTAATHGLDEEAESLK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.023303	2118.04808	0.3436	0.00024293	0.081548	5.7656E-05	0.42514	0.00030059	707.357460434215	14.764	0.10642	14.764	14.728	14.834	0	513	49	0.981336640919867	0.0323166232596742	0.981336640919867	593.415357908552	0	19.5418980178498						443	13	5	NaN	NaN	NaN	7.4059E-06	1	33592	77.431	71.529	1	139560			17638	1241	14868	15306	17638	17638		
SLAYVDNILK	10	Unmodified	_SLAYVDNILK_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.321514	1134.62847	0.92442	0.00052537	-4.2012	-0.0023876	-3.2768	-0.0018623	568.320896947207	12.972	0.18619	12.972	12.901	13.088	0	603	43	0.920633820089869	0.0283829455526903	0.920633820089869	373.227975302983	0	11.506539376026						237	22	3	NaN	NaN	NaN	0.042656	1	7668	49.16	27.885	1	48818			17639	1883	14869	15307	17639	17639		
SLCIGATYDVTDSR	14	Unmodified	_SLCIGATYDVTDSR_			0	0	0	O00541	O00541	O00541	PES1	Pescadillo homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.364312	1556.71407	1.966	0.0015322	0.86743	0.00067605	2.8335	0.0022083	779.365448549706	10.099	0.2128	10.099	10.064	10.277	0	402	37	1.05585747106793	0.0241039161855134	1.05585747106793	426.651792603094	0	9.73993112811178						347	25	4	NaN	NaN	NaN	0.0016973	1	20251	55.578	47.932	1	58847			17640	90	14870	15308	17640	17640		
SLCLGPALIHTAK	13	Unmodified	_SLCLGPALIHTAK_			0	0	0	Q99643	Q99643	Q99643	SDHC	Succinate dehydrogenase cytochrome b560 subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.887029	1379.75951	1.4957	0.0010334	0.77068	0.00053245	2.2664	0.0015658	690.887714600951	10.321	0.15073	10.321	10.232	10.383	0	387	31	1.06589869032374	0.0200755173877298	1.06589869032374	431.195880706475	0	8.12129752970344						306	18	3	NaN	NaN	NaN	0.0073384	1	14826	40.533	27.937	1	71490			17641	2662	14871	15309	17641	17641		
SLCSDDTPMVR	11	Unmodified	_SLCSDDTPMVR_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.784112	1279.55367	1.7175	0.0011006	1.0292	0.00065951	2.7467	0.0017601	640.784700831562	6.1879	0.16852	6.1879	6.1347	6.3033	0	573	37	0.940896116921038	0.0242979231728671	0.940896116921038	380.923237191419	0	9.83705149334105						352	20	4	NaN	NaN	NaN	0.0005619	1	11732	90.761	83.115	1	91432			17642	906	14872	15310	17642	17642		
SLDDDLDGVPLDATEDSK	18	Unmodified	_SLDDDLDGVPLDATEDSK_			0	0	0	O15042	O15042	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.934007	1903.85346	2.452	0.0023366	-0.44452	-0.0004236	2.0075	0.001913	952.932910938062	12.742	0.20395	12.742	12.635	12.839	0	258	37	1.15196821829984	0.0239484029047847	1.15196821829984	464.739281362837	0	9.66151963131722						522	24	4	NaN	NaN	NaN	8.4618E-06	1	29684	85.813	84.225	1	108030			17643	140	14873	15311	17643	17643		
SLDEQANQENDALHK	15	Unmodified	_SLDEQANQENDALHK_			0	0	0	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.397729	1710.78091	3.3374	0.0028581	-1.579	-0.0013522	1.7584	0.0015059	856.39594944674	4.0953	0.026627	4.0953	4.0864	4.113	0	324	19	1.1079963157843	0.012010502670277	1.1079963157843	447.364469438867	0	4.84935922461017						52	4	3	NaN	NaN	NaN	3.3406E-05	1	24774	56.938	48.131	1	7418.5			17644	9	14874	15312	17644	17644		
SLDEQANQENDALHK	15	Unmodified	_SLDEQANQENDALHK_			0	0	0	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.267578	1710.78091	0.52277	0.00029864	1.6967	0.00096926	2.2194	0.0012679	571.268693261146	4.1041	0.053225	4.1041	4.0864	4.1396	0	732	19	0.833184998970724	0.0122386288236357	0.833184998970724	504.607624392268	0	7.41216587449696						86	7	3	NaN	NaN	NaN	0.022815	1	24775	43.306	43.072	1	16997			17645	9	14874	15312	17645	17645		
SLDIQSLDIQCEELSDAR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLDIQSLDIQCEELSDAR_			1	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.50207	2132.98958	0.80188	0.00085601	0.87066	0.00092943	1.6725	0.0017854	1068.0046296734	17.672	0.1596	17.672	17.637	17.796	0	114	82	1.24744674793813	0.0535484215609205	1.24744674793813	502.866895970422	0	21.5862749884625						684	19	4	NaN	NaN	NaN	4.6298E-14	1	33778	141.87	140.78	1	159340			17646	678	14875	15313	17646	17646		
SLDIQVPNFPADETK	15	Unmodified	_SLDIQVPNFPADETK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.422684	1672.83082	2.2868	0.0019151	2.0299	0.0016999	4.3167	0.0036149	837.925980350752	14.187	0.28373	14.187	14.09	14.373	-1.7764E-15	360	64	1.08395544855938	0.0421034272006935	1.08395544855938	437.737503062967	0	17.0027736081954						811	33	4	NaN	NaN	NaN	0.056872	1	23701	29.98	24.484	1	207620			17647	1101	14876	15314	17647	17647		
SLDIYSFIK	9	Unmodified	_SLDIYSFIK_			0	0	0	Q9NR50	Q9NR50	Q9NR50	EIF2B3	Translation initiation factor eIF-2B subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.297507	1084.58046	-0.18097	-9.8322E-05	-0.62221	-0.00033804	-0.80318	-0.00043637	543.297117148359	16.067	0.15963	16.067	16.014	16.174	0	657	34	0.884090832094921	0.0223643734856528	0.884090832094921	358.611794559132	0	9.07161099145924						354	19	4	NaN	NaN	NaN	0.040181	1	6327	30.593	19.891	1	119410			17648	3015	14877	15315	17648	17648		
SLDLDGIIAEVK	12	Unmodified	_SLDLDGIIAEVK_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.855918	1271.69728	0.50198	0.00031969	0.44801	0.00028532	0.94999	0.00060501	636.856578713419	16.856	0.30152	16.856	16.785	17.087	0	486	121	0.999498404980629	0.0807805139106839	0.999498404980629	404.675160274665	0	32.7062727173731						2241	35	5	NaN	NaN	NaN	2.1684E-05	1	11550	135.28	113.24	1	2033100		+	17649	39	14878	15316	17649	17649		
SLDLDSCTLSEILR	14	Unmodified	_SLDLDSCTLSEILR_			0	0	0	Q9NRL2	Q9NRL2	Q9NRL2	BAZ1A	Bromodomain adjacent to zinc finger domain protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.40872	1620.80289	1.1224	0.00091074	-1.1668	-0.00094678	-0.044414	-3.6038E-05	811.908420244138	17.38	0.15074	17.38	17.335	17.486	0	372	37	1.07593298845566	0.0240773390598485	1.07593298845566	434.612342259773	0	9.7257996886994						253	18	3	NaN	NaN	NaN	0.0044325	1	22218	40.861	34.833	1	53738			17650	3021	14879	15317	17650	17650		
SLDLFNCEITNLEDYR	16	Unmodified	_SLDLFNCEITNLEDYR_			0	0	0	Q9BTT0	Q9BTT0	Q9BTT0	ANP32E	Acidic leucine-rich nuclear phosphoprotein 32 family member E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.46475	2000.91496	1.1529	0.0011546	0.85912	0.00086038	2.012	0.0020149	1001.96703153174	18.053	0.15074	18.053	18.009	18.16	0	201	49	1.18983705239708	0.0318523281569778	1.18983705239708	479.848217380754	0	12.8456941685927						741	18	6	NaN	NaN	NaN	3.4537E-33	1	31647	202.24	181.63	1	296810			17651	2737	14880	15318	17651	17651		
SLDLIESLLR	10	Unmodified	_SLDLIESLLR_			0	0	0	A5YKK6	A5YKK6	A5YKK6	CNOT1	CCR4-NOT transcription complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.840071	1157.66559	-0.96178	-0.00055768	1.024	0.00059375	0.062205	3.6069E-05	579.840514344982	19.029	0.079787	19.029	19.002	19.082	0	630	31	0.902373728295776	0.0203016545312636	0.902373728295776	365.737842748162	0	8.22839041037446						180	10	3	NaN	NaN	NaN	0.0086045	1	8303	67.507	47.274	1	57560			17652	10	14881	15319	17652	17652		
SLDMDSIIAEVK	12	Unmodified	_SLDMDSIIAEVK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.83941	1319.66427	0.97564	0.00064474	0.66252	0.00043782	1.6382	0.0010826	660.840103241628	15.863	0.33696	15.863	15.792	16.129	1.7764E-15	477	70	1.0055473068722	0.0463685348417228	1.0055473068722	406.965210777559	0	18.7662782510009						1961	39	6	NaN	NaN	NaN	1.216E-07	1	12964	130.79	107.89	1	2830900		+	17653	28	14882	15320	17653	17653		
SLDMDSIIAEVK	12	Oxidation (M)	_SLDM(Oxidation (M))DSIIAEVK_	SLDM(1)DSIIAEVK	SLDM(68)DSIIAEVK	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.836868	1335.65918	1.5964	0.0010677	-3.7184	-0.002487	-2.1221	-0.0014193	668.834381069252	11.323	0.24832	11.323	11.163	11.412	0	525	52	0.973257487423603	0.0343340389599219	0.973257487423603	393.848008166752	0	13.8939520439562						445	29	2	NaN	NaN	NaN	0.020074	1	13459	67.548	59.074	1	352120		+	17654	28	14882	15321	17654	17654	11	
SLDQDPVVR	9	Unmodified	_SLDQDPVVR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.772188	1027.52982	1.5621	0.00080412	-0.99594	-0.00051268	0.56614	0.00029143	514.771640703922	5.0883	0.33698	5.0883	4.9908	5.3278	0	696	34	0.857641857947968	0.0223954425033767	0.857641857947968	348.125523023299	0	9.09053710773901						369	39	2	NaN	NaN	NaN	1.5916E-05	1	4926	129.72	85.987	1	326510			17655	2415	14883	15322	17655	17655		
SLDVNQDSELK	11	Unmodified	_SLDVNQDSELK_			0	0	0	Q99584	Q99584	Q99584	S100A13	Protein S100-A13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.309332	1246.60411	2.4066	0.0015025	0.45765	0.00028571	2.8643	0.0017882	624.309737871739	6.0283	0.23948	6.0283	5.9307	6.1702	0	546	52	0.959108205975751	0.0343910976262953	0.959108205975751	388.406010184599	0	13.9272179423269						409	28	2	NaN	NaN	NaN	4.083E-05	1	10817	96.957	81.375	1	351260			17656	2653	14884	15323	17656	17656		
SLDWQIDVDLLNK	13	Unmodified	_SLDWQIDVDLLNK_			0	0	0	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.909213	1557.80387	0.83902	0.00065436	-0.62656	-0.00048866	0.21246	0.0001657	779.90971690046	17.557	0.18623	17.557	17.468	17.654	0	429	37	1.03776581230406	0.0241338680851122	1.03776581230406	419.338718882361	0	9.75197410099452						261	22	4	NaN	NaN	NaN	4.0792E-05	1	20296	82.437	72.695	1	62187			17657	1790	14885	15324	17657	17657		
SLEAQVAHADQQLR	14	Unmodified	_SLEAQVAHADQQLR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.40516	1564.79577	3.1763	0.0024883	-0.63469	-0.00049722	2.5416	0.0019911	783.404567359174	7.6422	0.12418	7.6422	7.6068	7.7309	0	333	46	1.10198982404297	0.0300407400465015	1.10198982404297	445.272723766641	0	12.1383354479594						382	15	4	NaN	NaN	NaN	3.2225E-05	1	20496	102.03	89.447	1	125310			17658	1782	14886	15325	17658	17658		
SLEDALSSDTSGHFR	15	Unmodified	_SLEDALSSDTSGHFR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.253269	1620.73798	0.57003	0.00030853	0.41411	0.00022414	0.98413	0.00053267	541.253473026564	9.647	0.14187	9.647	9.6026	9.7445	0	672	43	0.873923798053065	0.0284775811147984	0.873923798053065	529.516518483209	0	17.254764820829						366	17	3	NaN	NaN	NaN	0.0076424	1	22203	46.068	44.812	1	175590			17659	573	14887	15326	17659	17659		
SLEDALSSDTSGHFR	15	Unmodified	_SLEDALSSDTSGHFR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.376266	1620.73798	2.9677	0.0024079	0.69465	0.00056362	3.6623	0.0029715	811.375861346234	9.647	0.17732	9.647	9.5849	9.7622	0	303	94	1.12200181823275	0.0620671513679067	1.12200181823275	453.221530768585	0	25.0714115577064						700	21	3	NaN	NaN	NaN	2.6696E-17	1	22205	198.33	175.43	1	434160			17660	573	14887	15326	17660	17660		
SLEDLQDEYDFK	12	Unmodified	_SLEDLQDEYDFK_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.338286	1500.66202	1.0315	0.000775	1.9431	0.0014599	2.9745	0.0022349	751.33991713997	12.21	0.13303	12.21	12.174	12.307	0	441	34	1.02971785871157	0.022139515615524	1.02971785871157	416.226255628029	0	8.94909960831222						289	16	3	NaN	NaN	NaN	0.00060384	1	18535	60.547	56.301	1	93058			17661	1044	14888	15327	17661	17661		
SLEDPYSQQIR	11	Unmodified	_SLEDPYSQQIR_			0	0	0	Q9NVH2	Q9NVH2	Q9NVH2	INTS7	Integrator complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.330598	1334.64664	1.4251	0.00095243	-1.4365	-0.00096004	-0.011396	-7.616E-06	668.331016002832	7.4826	0.24826	7.4826	7.3142	7.5624	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	392.215672509277	0	9.81367715382231						273	29	3	NaN	NaN	NaN	0.00088533	1	13420	61.48	46.717	1	64700			17662	3066	14889	15328	17662	17662		
SLEDQVEMLR	10	Unmodified	_SLEDQVEMLR_			0	0	0	P14314	P14314	P14314	PRKCSH	Glucosidase 2 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.302995	1218.59144	1.2028	0.0007341	-0.89812	-0.00054813	0.30473	0.00018598	610.302697857541	11.394	0.23949	11.394	11.27	11.509	0	585	67	0.932794566565362	0.0445585519618686	0.932794566565362	377.844996182123	0	18.0492323812582						787	28	4	NaN	NaN	NaN	3.3015E-10	1	9973	170.69	127.85	1	517010			17663	694	14890	15329	17663	17663		
SLEEGEGPIAVIMTPTR	17	Unmodified	_SLEEGEGPIAVIMTPTR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.464026	1798.9135	1.8981	0.0017092	-0.093038	-8.3778E-05	1.8051	0.0016254	900.464228377469	15.171	0.30147	15.171	14.967	15.269	0	288	46	1.13199748998575	0.0299787708874888	1.13199748998575	456.875172660178	0	12.0994580346055						933	35	5	NaN	NaN	NaN	1.9344E-14	1	27192	141.88	130.4	1	274020			17664	2110	14891	15330	17664	17664		
SLEEGEGPIAVIMTPTR	17	Oxidation (M)	_SLEEGEGPIAVIM(Oxidation (M))TPTR_	SLEEGEGPIAVIM(1)TPTR	SLEEGEGPIAVIM(90)TPTR	0	1	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.461484	1814.90841	1.6064	0.0014594	0.23927	0.00021737	1.8457	0.0016767	908.462294911457	12.361	0.18621	12.361	12.245	12.431	0	282	34	1.13599383354359	0.0219814046771438	1.13599383354359	458.457187451263	0	8.87111590480714						308	22	3	NaN	NaN	NaN	5.2402E-06	1	27604	90.156	82.58	1	65693			17665	2110	14891	15331	17665	17665	586	
SLEEIYLFSLPIK	13	Unmodified	_SLEEIYLFSLPIK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.437075	1550.8596	1.4939	0.0011599	0.79984	0.00062103	2.2938	0.001781	776.437585039614	19.357	0.15076	19.357	19.321	19.472	0	405	139	1.05384839605172	0.0923730763908344	1.05384839605172	425.854135738569	0	37.3274341540118						1759	18	5	NaN	NaN	NaN	1.1869E-11	1	20099	157.77	135.62	1	1069200			17666	717	14892	15332	17666	17666		
SLEELLLDANQLR	13	Unmodified	_SLEELLLDANQLR_			0	0	0	Q14160;Q9BTT6	Q14160	Q14160	SCRIB;LRRC1	Protein scribble homolog;Leucine-rich repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.414662	1512.81477	1.3371	0.0010127	-0.037611	-2.8487E-05	1.2995	0.00098424	757.414577044549	17.805	0.08866	17.805	17.779	17.867	0	399	85	1.0578662689527	0.0562114943840477	1.0578662689527	427.572849731461	0	22.7197988506107						288	11	2	NaN	NaN	NaN	3.9436E-05	1	18902	94.804	86.33	1	87315			17667	1730	14893	15333	17667	17667		
SLEELPVDIILASVG	15	Unmodified	_SLEELPVDIILASVG_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.934896	1553.85524	0.53216	0.00041399	0.38996	0.00030336	0.92212	0.00071735	777.935342278588	20.288	0.026605	20.288	20.279	20.306	0	417	52	1.04580932352505	0.0341967320242422	1.04580932352505	422.598384587955	0	13.818468994827						128	4	3	NaN	NaN	NaN	4.3374E-06	1	20185	99.34	81.61	1	54813			17668	3452	14894	15334	17668	17668		
SLEELRLEDYQANR	14	Unmodified	_SLEELRLEDYQANR_			0	0	1	P52948	P52948	P52948	NUP98	Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.291835	1734.85368	-1.781	-0.0010317	0.52704	0.00030531	-1.2539	-0.00072638	579.626664304996	9.5583	0.062066	9.5583	9.5228	9.5849	0	762	19	0.812773098473386	0.0122556587589242	0.812773098473386	492.190594212562	0	7.42165307679511						89	8	3	NaN	NaN	NaN	0.0044284	1	25467	43.306	30.131	1	17064			17669	1227	14895	15335	17669	17669		
SLEGADLPNLLFYGPPGTGK	20	Unmodified	_SLEGADLPNLLFYGPPGTGK_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.53075	2045.04696	0.96781	0.00099059	-1.0157	-0.0010396	-0.047885	-4.9012E-05	1024.03156838351	18.222	0.1596	18.222	18.16	18.319	0	195	88	1.19381749893585	0.0576967248444535	1.19381749893585	481.381904720412	0	23.2649959700792						807	19	4	NaN	NaN	NaN	2.2289E-05	1	32447	88.421	86.45	1	223910			17670	964	14896	15336	17670	17670		
SLEGDLEDLK	10	Unmodified	_SLEGDLEDLK_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.782418	1117.55028	0.97907	0.00054806	0.17814	9.9717E-05	1.1572	0.00064778	559.782392581539	11.332	0.30155	11.332	11.154	11.456	0	627	64	0.90440375274676	0.0426246249865688	0.90440375274676	366.71549080412	0	17.283331946399						600	35	2	NaN	NaN	NaN	0.00069394	1	7198	81.099	51.789	1	518280			17671	784	14897	15337	17671	17671		
SLELNPNNSTAMLR	14	Unmodified	_SLELNPNNSTAMLR_			0	0	0	Q9Y2Z0	Q9Y2Z0	Q9Y2Z0	SUGT1	Suppressor of G2 allele of SKP1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.395947	1558.77734	2.2537	0.0017588	-2.4678	-0.0019259	-0.2141	-0.00016708	780.394894427689	10.942	0.1951	10.942	10.862	11.057	0	411	43	1.04982941439551	0.0281406425229616	1.04982941439551	424.211032488043	0	11.3709626114982						543	23	4	NaN	NaN	NaN	0.00016988	1	20319	70.195	53.543	1	171620			17672	3359	14898	15338	17672	17672		
SLENYHFVDEHGK	13	Unmodified	_SLENYHFVDEHGK_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.579317	1573.71612	-0.32432	-0.00017046	0.27025	0.00014204	-0.05407	-2.8418E-05	525.579445502366	5.6736	0.13308	5.6736	5.6381	5.7711	0	777	31	0.802556497112065	0.020440313348464	0.802556497112065	486.397530874549	0	12.3880598796108						304	16	4	NaN	NaN	NaN	0.00014925	1	20773	61.577	56.749	1	117150			17673	1763	14899	15339	17673	17673		
SLENYHFVDEHGK	13	Unmodified	_SLENYHFVDEHGK_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.865337	1573.71612	2.7337	0.0021538	-1.1032	-0.00086914	1.6306	0.0012847	787.863949576547	5.6736	0.14194	5.6736	5.6292	5.7711	0	435	40	1.03374239103424	0.0261612711685622	1.03374239103424	417.675731503129	0	10.5702621534643						328	17	4	NaN	NaN	NaN	6.0218E-05	1	20774	98.167	86.811	1	67275			17674	1763	14899	15339	17674	17674		
SLEQNIQLPAALLSR	15	Unmodified	_SLEQNIQLPAALLSR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.970136	1651.92572	2.3696	0.0019596	-1.0663	-0.00088181	1.3033	0.0010778	826.969998928322	16.147	0.18624	16.147	16.067	16.253	0	333	67	1.10198982404297	0.0440506641076943	1.10198982404297	445.066663487254	0	17.7909828848336						789	22	4	NaN	NaN	NaN	0.00089719	1	23121	80.815	70.565	1	282840			17675	952	14900	15340	17675	17675		
SLESFVELMK	10	Unmodified	_SLESFVELMK_			0	0	0	Q6KB66;CON__Q6KB66-1	Q6KB66	Q6KB66	KRT80	Keratin, type II cytoskeletal 80	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.807382	1181.60021	-0.50184	-0.00029699	2.744	0.0016239	2.2422	0.0013269	591.807051716237	16.324	0.097545	16.324	16.271	16.369	0	615	34	0.912521036363781	0.0223117043347298	0.912521036363781	369.762392720297	0	9.04091944373391						202	12	3	NaN	NaN	NaN	0.012437	1	8920	37.591	22.009	1	41607		+	17676	44	14901	15341	17676	17676		
SLESLDTSLFAK	12	Unmodified	_SLESLDTSLFAK_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.84555	1309.67655	0.96914	0.00063561	1.3874	0.00090991	2.3565	0.0015455	655.846544828089	13.974	0.16847	13.974	13.886	14.054	0	513	64	0.981336640919867	0.0423950504136956	0.981336640919867	397.198047289983	0	17.1594848667791						701	18	4	NaN	NaN	NaN	0.0010477	1	12645	66.664	58.482	1	288260			17677	1601	14902	15342	17677	17677		
SLESLHSFVAAATK	14	Unmodified	_SLESLHSFVAAATK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.596308	1459.76709	-2.3468	-0.0011443	-0.9356	-0.00045619	-3.2824	-0.0016005	487.595599629682	11.624	0.079743	11.624	11.58	11.66	0	783	22	0.798467866007927	0.0143131971978526	0.798467866007927	484.248494018237	0	8.68055495119614						124	10	3	NaN	NaN	NaN	0.037115	1	17259	30.875	23.299	1	24628			17678	1816	14903	15343	17678	17678		
SLESLHSFVAAATK	14	Unmodified	_SLESLHSFVAAATK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.596308	1459.76709	-1.787	-0.00087133	-0.9046	-0.00044108	-2.6916	-0.0013124	487.595991906669	11.616	0.12421	11.616	11.571	11.695	0	831	43	0.76571780291124	0.0286802597846787	0.76571780291124	464.386493909385	0	17.3937777536056						219	15	2	NaN	NaN	NaN	0.0028498	1	17260	40.861	37.356	1	73828			17679	1816	14903	15343	17679	17679		
SLESLHSFVAAATK	14	Unmodified	_SLESLHSFVAAATK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.890823	1459.76709	1.1959	0.00087405	0.79604	0.00058182	1.9919	0.0014559	730.891267614779	11.607	0.204	11.607	11.509	11.713	0	405	64	1.05384839605172	0.0422255413252488	1.05384839605172	426.089194094715	0	17.0725191032177						362	24	2	NaN	NaN	NaN	2.5381E-07	1	17262	121.69	101.08	1	176570			17680	1816	14903	15343	17680	17680		
SLESQVENLQK	11	Unmodified	_SLESQVENLQK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.832974	1273.6514	1.4841	0.00094664	-2.3613	-0.0015061	-0.87712	-0.00055946	637.832669121929	8.6623	0.26624	8.6623	8.5648	8.831	0	528	52	0.971237000454584	0.0343577961345568	0.971237000454584	393.226262673668	0	13.910495338802						393	31	3	NaN	NaN	NaN	0.0029199	1	11598	72.365	43.056	1	112270			17681	667	14904	15344	17681	17681		
SLETCMYDHK	10	Unmodified	_SLETCMYDHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.27338	1282.53221	2.1484	0.0013799	0.17376	0.0001116	2.3222	0.0014915	642.273562394429	4.7071	0.14188	4.7071	4.6716	4.8135	0	525	37	0.973257487423603	0.0242441707123356	0.973257487423603	394.015019281924	0	9.81504639227853						223	17	4	NaN	NaN	NaN	0.0076033	1	11830	57.032	48.85	1	65616			17682	1737	14905	15345	17682	17682		
SLETENAGLR	10	Unmodified	_SLETENAGLR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.280377	1088.5462	1.2304	0.0006709	0.87527	0.00047727	2.1056	0.0011482	545.281054063865	4.7337	0.36353	4.7337	4.6273	4.9908	0	693	46	0.85967808974117	0.0305350029488345	0.85967808974117	348.693366379689	0	12.3852789755855						827	42	5	NaN	NaN	NaN	2.4559E-07	1	6433	118.06	90.323	1	701760			17683	493	14906	15346	17683	17683		
SLETENSALQLQVTER	16	Unmodified	_SLETENSALQLQVTER_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.465612	1816.91667	1.9235	0.0017493	0.82613	0.00075133	2.7496	0.0025006	909.467003942728	10.613	0.079771	10.613	10.569	10.649	0	312	37	1.11600111266355	0.0240044781973821	1.11600111266355	450.384874680837	0	9.68749384030951						224	10	3	NaN	NaN	NaN	3.2961E-12	1	27651	137.4	117.07	1	42896			17684	784	14907	15347	17684	17684		
SLEYCSTASIDSENPPDLNK	20	Unmodified	_SLEYCSTASIDSENPPDLNK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1120.50481	2238.99506	2.2192	0.0024866	-3.7626	-0.004216	-1.5434	-0.0017294	1120.49988190177	9.9041	0.088664	9.9041	9.8509	9.9396	0	171	34	1.20972836110953	0.0218579314296279	1.20972836110953	487.512591611262	0	8.80860294020533						133	11	2	NaN	NaN	NaN	2.3661E-05	1	35080	65.212	63.738	1	27957			17685	1465	14908	15348	17685	17685		
SLFFPDEAINK	11	Unmodified	_SLFFPDEAINK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.829703	1279.64485	1.1396	0.00073029	-0.46886	-0.00030046	0.67074	0.00042983	640.829820962655	13.478	0.23943	13.478	13.389	13.629	0	549	52	0.957085760909907	0.0343815779756202	0.957085760909907	387.477350780969	0	13.9194242499202						558	28	3	NaN	NaN	NaN	0.0047134	1	11747	46.033	24.945	1	159540			17686	1108	14909	15349	17686	17686		
SLFSSIGEVESAK	13	Unmodified	_SLFSSIGEVESAK_			0	0	0	Q15717	Q15717	Q15717	ELAVL1	ELAV-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.348457	1352.68236	1.7278	0.0011703	-0.38557	-0.00026117	1.3422	0.00090913	677.34898412565	12.972	0.20396	12.972	12.919	13.123	0	486	76	0.999498404980629	0.0503866600454252	0.999498404980629	404.414772988203	0	20.3873358700351						558	24	3	NaN	NaN	NaN	3.8951E-05	1	13966	94.66	88.794	1	562050			17687	1864	14910	15350	17687	17687		
SLFSTTPLTTDDGVLLR	17	Unmodified	_SLFSTTPLTTDDGVLLR_			0	0	0	Q9NR09	Q9NR09	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.491098	1834.96764	0.74849	0.00068748	-2.4436	-0.0022445	-1.6951	-0.001557	918.487942770651	16.777	0.20394	16.777	16.652	16.856	0	258	49	1.15196821829984	0.0319399906194668	1.15196821829984	464.865494767351	0	12.8890704676701						381	24	3	NaN	NaN	NaN	0.0027709	1	28108	46.768	35.286	1	84458			17688	3008	14911	15351	17688	17688		
SLFVGHMDYK	10	Unmodified	_SLFVGHMDYK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.792066	1195.56958	1.2122	0.00072584	-0.1682	-0.00010072	1.044	0.00062512	598.792151444533	7.9881	0.23069	7.9881	7.8906	8.1213	0	558	40	0.951016745717027	0.0263136394103891	0.951016745717027	385.309273431419	0	10.66110489454						370	27	4	NaN	NaN	NaN	0.023201	1	9307	46.033	41.126	1	99463			17689	2808	14912	15352	17689	17689		
SLGAEHVITEEELR	14	Unmodified	_SLGAEHVITEEELR_			0	0	0	Q9BV79	Q9BV79	Q9BV79	MECR	Trans-2-enoyl-CoA reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.273893	1581.79985	-1.5474	-0.00081747	0.28762	0.00015194	-1.2598	-0.00066553	528.273948861407	8.2987	0.053202	8.2987	8.281	8.3342	0	780	19	0.800512323802183	0.0122658937874733	0.800512323802183	485.137038816586	0	7.43353876456251						80	7	2	NaN	NaN	NaN	0.0017819	1	21025	61.194	54.054	1	19852			17690	2759	14913	15353	17690	17690		
SLGAEHVITEEELR	14	Unmodified	_SLGAEHVITEEELR_			0	0	0	Q9BV79	Q9BV79	Q9BV79	MECR	Trans-2-enoyl-CoA reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.907202	1581.79985	2.1256	0.0016833	0.33018	0.00026147	2.4558	0.0019448	791.907479477905	8.2987	0.070942	8.2987	8.2721	8.343	0	366	22	1.07994477139643	0.0140383382259719	1.07994477139643	436.323994370605	0	5.67183060774607						111	9	3	NaN	NaN	NaN	0.037325	1	21026	45.939	35.152	1	19573			17691	2759	14913	15353	17691	17691		
SLGAEPLEVDLK	12	Unmodified	_SLGAEPLEVDLK_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.848093	1269.68163	0.80076	0.00050916	0.72591	0.00046157	1.5267	0.00097073	635.848288080953	11.837	0.15965	11.837	11.766	11.926	0	534	67	0.967195187796614	0.0444599647711276	0.967195187796614	391.6029677763	0	18.0011794633375						494	19	3	NaN	NaN	NaN	0.00016676	1	11508	57.293	30.346	1	151590			17692	1664	14914	15354	17692	17692		
SLGDDISSETSGDFRK	16	Unmodified	_SLGDDISSETSGDFRK_			0	0	1	P12429	P12429	P12429	ANXA3	Annexin A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	571.935717	1712.78532	0.36818	0.00021057	0.67536	0.00038626	1.0435	0.00059683	571.936057108689	8.1656	0.11528	8.1656	8.1302	8.2454	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	525.579042785335	0	12.3243543023491						231	14	4	NaN	NaN	NaN	1.7841E-08	1	24847	93.772	85.397	1	66942			17693	669	14915	15355	17693	17693		
SLGEIPIVESEIK	13	Unmodified	_SLGEIPIVESEIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.395407	1412.77626	1.4289	0.0010108	-0.67237	-0.00047563	0.75653	0.00053517	707.395814690664	14.099	0.20397	14.099	14.001	14.205	0	465	79	1.01360860968299	0.0523406388660725	1.01360860968299	409.947510282763	0	21.1688361609974						935	24	4	NaN	NaN	NaN	0.0038056	1	15863	50.09	42.532	1	228880			17694	1240	14916	15356	17694	17694		
SLGEISALTSK	11	Unmodified	_SLGEISALTSK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.308603	1104.60265	0.62473	0.00034567	0.025411	1.406E-05	0.65014	0.00035973	553.308749977861	9.647	0.16846	9.647	9.5849	9.7534	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	366.767856911983	0	9.0557188062815						349	20	4	NaN	NaN	NaN	0.00062957	1	6845	76.85	64.023	1	169580			17695	753	14917	15357	17695	17695		
SLGELGLEHFQAPLVR	16	Unmodified	_SLGELGLEHFQAPLVR_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.324699	1764.95227	0.97407	0.00057405	-0.27808	-0.00016388	0.696	0.00041017	589.324402816752	14.258	0.23941	14.258	14.081	14.32	0	564	37	0.946969335010767	0.0242979231728671	0.946969335010767	573.378303768724	0	14.7120941078866						266	28	4	NaN	NaN	NaN	8.2369E-05	1	26276	78.043	69.236	1	60901			17696	3137	14918	15358	17696	17696		
SLGELGLEHFQAPLVR	16	Unmodified	_SLGELGLEHFQAPLVR_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.483411	1764.95227	2.009	0.0017749	-0.16218	-0.00014328	1.8468	0.0016316	883.482796011897	14.258	0.070924	14.258	14.223	14.294	0	222	28	1.17589687683038	0.0179304709178465	1.17589687683038	474.662855933651	0	7.23781881030362						185	9	4	NaN	NaN	NaN	2.4649E-06	1	26277	56.938	52.121	1	39771			17697	3137	14918	15358	17697	17697		
SLGGDVASDGDFLIFEGNR	19	Unmodified	_SLGGDVASDGDFLIFEGNR_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.968519	1967.92248	1.1829	0.0011651	-0.66657	-0.00065655	0.51632	0.00050856	984.9672358778	16.502	0.22166	16.502	16.466	16.688	0	243	43	1.16194328902838	0.027916769999432	1.16194328902838	468.653096266138	0	11.2598272407286						402	26	4	NaN	NaN	NaN	4.4385E-07	1	31067	105.08	102.36	1	82260			17698	69	14919	15359	17698	17698		
SLGHGLINK	9	Unmodified	_SLGHGLINK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.774534	937.534515	1.2363	0.0005808	1.713	0.00080473	2.9493	0.0013855	469.775584434182	3.9534	0.12412	3.9534	3.909	4.0332	0	711	31	0.847456455381371	0.0203750522723063	0.847456455381371	344.427269989567	0	8.28092533307455						169	15	2	NaN	NaN	NaN	0.051563	1	3036	44.767	6.4448	1	42884			17699	2329	14920	15360	17699	17699		
SLGLQLPDGQR	11	Unmodified	_SLGLQLPDGQR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.325119	1182.63569	1.2733	0.00075418	-1.0984	-0.00065064	0.17481	0.00010354	592.324773115151	10.436	0.18623	10.436	10.347	10.534	0	609	64	0.916577990479294	0.0425655822640078	0.916577990479294	371.402573549836	0	17.2478141104315						530	22	4	NaN	NaN	NaN	1.2525E-05	1	8953	144.47	111.08	1	200040			17700	141	14921	15361	17700	17700		
SLGLSDEEIVK	11	Unmodified	_SLGLSDEEIVK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.319168	1188.62378	1.7204	0.0010242	-0.034232	-2.0379E-05	1.6862	0.0010038	595.319516923521	9.7711	0.25716	9.7711	9.6913	9.9484	0	558	46	0.951016745717027	0.0303534869943584	0.951016745717027	385.334960536256	0	12.298689550719						572	28	4	NaN	NaN	NaN	0.0008605	1	9120	72.365	54.029	1	234760			17701	3161	14922	15362	17701	17701		
SLGPPQGEEDSVPR	14	Unmodified	_SLGPPQGEEDSVPR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.357345	1466.70014	2.0736	0.0015227	-1.772	-0.0013013	0.30159	0.00022147	734.355946650662	6.4717	0.38131	6.4717	6.25	6.6313	0	468	70	1.01159370163332	0.046349317468141	1.01159370163332	408.986745340693	0	18.7390021007946						1149	44	4	NaN	NaN	NaN	0.00013083	1	17477	108.24	99.77	1	650440			17702	1465	14923	15363	17702	17702		
SLGQWLQEEK	10	Unmodified	_SLGQWLQEEK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.311677	1216.6088	1.6958	0.0010333	-0.1512	-9.2126E-05	1.5446	0.00094116	609.312215389991	10.942	0.3281	10.942	10.8	11.128	0	558	76	0.951016745717027	0.0506242079777197	0.951016745717027	385.233240639394	0	20.506608092748						1406	38	5	NaN	NaN	NaN	1.1928E-07	1	9921	152.17	95.793	1	1482100			17703	922	14924	15364	17703	17703		
SLGTADVHFER	11	Unmodified	_SLGTADVHFER_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.306926	1230.5993	2.0854	0.0012852	1.8097	0.0011153	3.8951	0.0024006	616.307364785052	6.4451	0.25716	6.4451	6.3919	6.6491	0	531	49	0.969216233931596	0.0323434604594182	0.969216233931596	392.55532133232	0	13.0998605565476						424	30	3	NaN	NaN	NaN	2.5508E-11	1	10323	167.06	133.64	1	599230			17704	2172	14925	15365	17704	17704		
SLGTDLMNEMR	11	Unmodified	_SLGTDLMNEMR_			0	0	0	P05556	P05556	P05556	ITGB1	Integrin beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.79448	1265.57441	1.502	0.00095197	-1.8921	-0.0011992	-0.39006	-0.00024722	633.793954405547	12.955	0.15961	12.955	12.901	13.061	0	558	37	0.951016745717027	0.0242811063417099	0.951016745717027	385.066013079944	0	9.83140292143116						433	19	4	NaN	NaN	NaN	8.0391E-07	1	11368	114.39	66.237	1	157380			17705	535	14926	15366	17705	17705		
SLGVDMDDKDDAHYAVQAR	19	Unmodified	_SLGVDMDDKDDAHYAVQAR_			0	0	1	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.656737	2104.94838	1.7647	0.0012399	0.017614	1.2376E-05	1.7823	0.0012523	702.991110731828	7.2787	0.10642	7.2787	7.2432	7.3496	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	586.109871908159	0	9.77675109584789						262	13	5	NaN	NaN	NaN	3.6212E-07	1	33383	71.912	70.817	1	85002			17706	2808	14927	15367	17706	17706		
SLGVGYAAVDNPIFYK	16	Unmodified	_SLGVGYAAVDNPIFYK_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.445963	1712.87737	1.4783	0.0012676	3.6679	0.003145	5.1462	0.0044126	857.950539351962	14.746	0.12418	14.746	14.693	14.817	0	285	58	1.13399579921816	0.0379626683497278	1.13399579921816	457.857494936999	0	15.3276513402557						270	15	2	NaN	NaN	NaN	5.246E-09	1	24858	132.9	118.54	1	96993			17707	1664	14928	15368	17707	17707		
SLGYAYVNFQQPADAER	17	Unmodified	_SLGYAYVNFQQPADAER_			0	0	0	P11940;Q13310	P11940;Q13310	P11940	PABPC1;PABPC4	Polyadenylate-binding protein 1;Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.960497	1927.90644	1.5812	0.0015258	0.5392	0.00052031	2.1204	0.0020461	965.462395694088	11.979	0.25716	11.979	11.899	12.157	0	243	79	1.16194328902838	0.05188110531156	1.16194328902838	468.721210860517	0	20.9285381929018						1561	30	5	NaN	NaN	NaN	5.4002E-26	1	30232	215.61	178.1	1	659450			17708	661;1653	14929	15369	17708	17708		
SLHDALCVIR	10	Unmodified	_SLHDALCVIR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	395.213252	1182.61793	-1.7267	-0.00068242	-0.98648	-0.00038987	-2.7132	-0.0010723	395.213140024216	8.21	0.16853	8.21	8.1656	8.3342	0	837	31	0.761618911097395	0.0205001737706053	0.761618911097395	462.913957288861	0	12.4600589966794						338	20	4	NaN	NaN	NaN	0.0026324	1	8945	82.716	0	1	136470			17709	1113	14930	15370	17709	17709		
SLHDALCVIR	10	Unmodified	_SLHDALCVIR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	395.213252	1182.61793	-1.9535	-0.00077206	0.26533	0.00010486	-1.6882	-0.0006672	395.213624751577	8.6268	0.16858	8.6268	8.5914	8.7599	0	834	28	0.763668499782291	0.0184462999547469	0.763668499782291	464.159695922569	0	11.2117089814923						311	20	4	NaN	NaN	NaN	0.015022	1	8946	49.96	0	1	101420			17710	1113	14930	15370	17710	17710		
SLHDALCVIR	10	Unmodified	_SLHDALCVIR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.31624	1182.61793	1.6665	0.00098707	-1.4524	-0.00086026	0.21409	0.00012681	592.315887048747	8.21	0.31933	8.21	8.0858	8.4051	0	582	43	0.934820374997243	0.0283593603705795	0.934820374997243	378.794557825897	0	11.4913748770512						685	37	5	NaN	NaN	NaN	1.1496E-07	1	8947	125.98	0	1	397880			17711	1113	14930	15370	17711	17711		
SLHDALCVLAQTVK	14	Unmodified	_SLHDALCVLAQTVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.948464	1553.82356	-1.3758	-0.00071395	-0.78067	-0.00040513	-2.1564	-0.0011191	518.948239590152	15.021	0.23056	15.021	14.967	15.198	1.7764E-15	786	73	0.796423123669906	0.0490567802946507	0.796423123669906	482.734170010133	0	29.7346767253368						1310	27	6	NaN	NaN	NaN	5.0521E-06	1	20181	139.78	120.45	1	1169100			17712	1461	14931	15371	17712	17712		
SLHDALCVLAQTVK	14	Unmodified	_SLHDALCVLAQTVK_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.919058	1553.82356	2.1451	0.0016687	0.55778	0.00043391	2.7029	0.0021026	777.919801178374	15.021	0.20394	15.021	14.967	15.171	0	333	100	1.10198982404297	0.0660623955247506	1.10198982404297	445.300297248971	0	26.6949873059839						1788	24	5	NaN	NaN	NaN	7.0376E-24	1	20182	213.77	191.77	1	1255200			17713	1461	14931	15371	17713	17713		
SLHDALCVVK	10	Unmodified	_SLHDALCVVK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	381.205986	1140.59613	-1.1589	-0.00044179	-1.3319	-0.00050772	-2.4908	-0.00094951	381.205482186561	6.9949	0.13308	6.9949	6.9594	7.0925	0	882	40	0.730840773481911	0.0267153383629363	0.730840773481911	444.395260879175	0	16.2445366925965						294	16	4	NaN	NaN	NaN	0.063515	1	7808	21.275	16.735	1	91211			17714	747	14932	15372	17714	17714		
SLHDALCVVK	10	Unmodified	_SLHDALCVVK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.305341	1140.59613	1.4615	0.00083496	0.015104	8.6289E-06	1.4766	0.00084359	571.305729890697	6.9949	0.2661	6.9949	6.9239	7.19	0	603	46	0.920633820089869	0.0304166222504839	0.920633820089869	373.204512407638	0	12.3302234051874						783	31	5	NaN	NaN	NaN	0.00059211	1	7810	100.84	74.38	1	519770			17715	747	14932	15372	17715	17715		
SLHDPDGLVATYISEVHEHDGHLYLGSFR	29	Unmodified	_SLHDPDGLVATYISEVHEHDGHLYLGSFR_			0	0	0	Q9HDC9	Q9HDC9	Q9HDC9	APMAP	Adipocyte plasma membrane-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	816.898174	3263.56359	0.50241	0.00041042	1.4048	0.0011476	1.9072	0.001558	817.400297227256	15.872	0.097536	15.872	15.828	15.925	0	447	25	1.02569221487577	0.0161048002118316	1.02569221487577	825.089607300737	0	12.9550591198026						210	12	5	NaN	NaN	NaN	1.2874E-06	1	38519	42.959	42.899	1	39104			17716	2973	14933	15373	17716	17716		
SLHQAIEGDTSGDFLK	16	Unmodified	_SLHQAIEGDTSGDFLK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	573.284569	1716.83188	0.24579	0.00014091	-0.61858	-0.00035462	-0.37279	-0.00021372	573.284014354368	9.0617	0.15961	9.0617	9.0174	9.177	0	687	58	0.863749705078866	0.0386508360142306	0.863749705078866	523.103949204693	0	23.4077127207365						571	19	5	NaN	NaN	NaN	0.0018448	1	24959	90.156	86.651	1	192740			17717	573	14934	15374	17717	17717		
SLHQAIEGDTSGDFLK	16	Unmodified	_SLHQAIEGDTSGDFLK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.423216	1716.83188	2.6856	0.0023081	-1.1394	-0.00097922	1.5462	0.0013288	859.421894241548	9.0528	0.12415	9.0528	9.0174	9.1415	0	309	55	1.11800162319566	0.0360166400343891	1.11800162319566	451.391423345135	0	14.5416626165194						457	15	4	NaN	NaN	NaN	1.3045E-06	1	24961	110.9	92.397	1	135690			17718	573	14934	15374	17718	17718		
SLHQFLLEPITCHAWNR	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLHQFLLEPITCHAWNR_			1	0	0	Q92747	Q92747	Q92747	ARPC1A	Actin-related protein 2/3 complex subunit 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.030069	2163.06838	0.67254	0.00048559	-2.2008	-0.001589	-1.5283	-0.0011034	722.36325590381	16.182	0.10642	16.182	16.129	16.236	0	531	28	0.969216233931596	0.0181869004475753	0.969216233931596	586.006745654744	0	10.996149230392						164	13	2	NaN	NaN	NaN	2.5196E-07	1	34221	116.36	100.83	1	64028			17719	2430	14935	15375	17719	17719		
SLHTLFGDELCK	12	Unmodified	_SLHTLFGDELCK_			0	0	0	CON__P02769	CON__P02769	CON__P02769			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.902743	1418.6864	-1.665	-0.00078906	1.1395	0.00054002	-0.52553	-0.00024905	474.237495439928	10.684	0.088663	10.684	10.64	10.729	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	488.10014379317	0	9.91849518280407						155	11	3	NaN	NaN	NaN	0.0042721	1	16053	55.235	46.761	1	31501		+	17720	26	14936	15376	17720	17720		
SLHVLDTFDGHFDGVPVVSK	20	Unmodified	_SLHVLDTFDGHFDGVPVVSK_			0	0	0	CON__Q9TRI1	CON__Q9TRI1	CON__Q9TRI1			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.704016	2168.09022	0.63115	0.00045676	-0.519	-0.0003756	0.11215	8.1165E-05	724.038048021943	14.223	0.053193	14.223	14.205	14.258	0	573	34	0.940896116921038	0.0222684693182358	0.940896116921038	568.875452869058	0	13.4637451896034						135	7	3	NaN	NaN	NaN	0.035133	1	34285	22.724	20.177	1	23642		+	17721	45	14937	15377	17721	17721		
SLIDNFALNPDILCSAK	17	Unmodified	_SLIDNFALNPDILCSAK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.985126	1889.9557	1.3727	0.0012986	0.077432	7.325E-05	1.4502	0.0013718	946.486665927337	18.452	0.10648	18.452	18.399	18.506	0	240	31	1.16393748060522	0.0199323285473259	1.16393748060522	469.593028588314	0	8.04173994335935						140	13	2	NaN	NaN	NaN	0.051527	1	29371	34.472	31.184	1	48181			17722	2005	14938	15378	17722	17722		
SLIHTVLLQK	10	Unmodified	_SLIHTVLLQK_			0	0	0	Q96ME1	Q96ME1	Q96ME1	FBXL18	F-box/LRR-repeat protein 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.360973	1150.70739	0.80446	0.00046366	-0.90736	-0.00052297	-0.1029	-5.9309E-05	576.360407836715	9.2036	0.088675	9.2036	9.1681	9.2568	0	561	34	0.948993180460448	0.0222592210224549	0.948993180460448	384.660393696134	0	9.02244705037015						184	11	3	NaN	NaN	NaN	1.8983E-07	1	8101	130.31	102.21	1	50360			17723	2584	14939	15379	17723	17723		
SLIINTFYSNK	11	Unmodified	_SLIINTFYSNK_			0	0	0	Q58FF6	Q58FF6	Q58FF6	HSP90AB4P	Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.350803	1298.68705	1.3416	0.00087253	0.51779	0.00033675	1.8594	0.0012093	650.351259146681	12.485	0.266	12.485	12.44	12.706	0	507	58	0.985374541851584	0.0383680338413804	0.985374541851584	398.867628523665	0	15.530913393267						916	31	4	NaN	NaN	NaN	7.9749E-08	1	12324	143.39	126.94	1	695900			17724	1958	14940	15380	17724	17724		
SLIIVHPSWFIR	12	Unmodified	_SLIIVHPSWFIR_			0	0	0	Q12982;Q86WG3	Q12982	Q12982	BNIP2;ATCAY	BCL2/adenovirus E1B 19 kDa protein-interacting protein 2;Caytaxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.953878	1466.8398	-2.3325	-0.0011428	-0.11201	-5.4882E-05	-2.4445	-0.0011977	489.954049324303	15.331	0.044312	15.331	15.304	15.349	0	831	16	0.76571780291124	0.0102465159431113	0.76571780291124	464.365495508577	0	6.21394518328964						57	6	3	NaN	NaN	NaN	0.0098676	1	17492	25.613	24.111	1	8964			17725	1615	14941	15381	17725	17725		
SLIWTLLK	8	Unmodified	_SLIWTLLK_			0	0	0	Q9BZF1	Q9BZF1	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.307678	972.600803	-1.7897	-0.00087215	-1.0176	-0.0004959	-2.8074	-0.001368	487.307102661461	16.688	0.12417	16.688	16.644	16.768	0	723	25	0.839303037468863	0.0163136366798808	0.839303037468863	340.935816975485	0	6.62681153409119						177	15	3	NaN	NaN	NaN	0.015283	1	3693	56.014	37.612	1	39396			17726	2809	14942	15382	17726	17726		
SLLDELLEVDHIR	13	Unmodified	_SLLDELLEVDHIR_			0	0	0	P35610	P35610	P35610	SOAT1	Sterol O-acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.95075	1550.83042	-1.5038	-0.00077887	0.44048	0.00022814	-1.0633	-0.00055073	517.950789143805	18.825	0.062099	18.825	18.798	18.86	0	717	22	0.84338031290707	0.0142694733102946	0.84338031290707	511.204923325077	0	8.64927115067979						109	8	3	NaN	NaN	NaN	0.00012717	1	20094	74.849	63.493	1	27937			17727	974	14943	15383	17727	17727		
SLLDELLEVDHIR	13	Unmodified	_SLLDELLEVDHIR_			0	0	0	P35610	P35610	P35610	SOAT1	Sterol O-acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.422487	1550.83042	0.79611	0.00061812	-0.052866	-4.1046E-05	0.74324	0.00057707	776.422592637897	18.834	0.04434	18.834	18.807	18.851	0	357	22	1.08596037261705	0.0140325352916841	1.08596037261705	438.830478972025	0	5.67046859030569						66	6	2	NaN	NaN	NaN	0.0058546	1	20095	55.754	45.733	1	15587			17728	974	14943	15383	17728	17728		
SLLDFLPR	8	Unmodified	_SLLDFLPR_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.779285	959.544017	-1.0497	-0.00050468	-1.2152	-0.00058425	-2.2649	-0.0010889	480.778542718909	17.583	0.45219	17.583	17.371	17.823	0	729	46	0.835224628594324	0.030585949193784	0.835224628594324	339.343468724899	0	12.4267672890947						749	52	3	NaN	NaN	NaN	0.013237	1	3441	42.835	15.13	1	249570			17729	1247	14944	15384	17729	17729		
SLLDILTDPSK	11	Unmodified	_SLLDILTDPSK_			0	0	0	Q96RN5	Q96RN5	Q96RN5	MED15	Mediator of RNA polymerase II transcription subunit 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.337361	1200.66017	-0.56207	-0.00033799	-0.083797	-5.039E-05	-0.64587	-0.00038838	601.337380732549	17.238	0.14189	17.238	17.176	17.317	0	561	34	0.948993180460448	0.0222623031474618	0.948993180460448	384.470815737587	0	9.01924906051403						267	17	3	NaN	NaN	NaN	0.0039667	1	9491	47.334	31.752	1	68030			17730	2611	14945	15385	17730	17730		
SLLENDQLLSHGGQDLSADAFHR	23	Unmodified	_SLLENDQLLSHGGQDLSADAFHR_			0	0	0	Q9UBB9	Q9UBB9	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	631.561021	2522.21498	0.24851	0.00015695	0.46979	0.0002967	0.7183	0.00045365	631.812274801552	12.591	0.06206	12.591	12.564	12.626	0	597	19	0.924688525662974	0.0121624316558541	0.924688525662974	744.767162223887	0	9.79592528584476						146	8	4	NaN	NaN	NaN	0.0222	1	36931	14.659	14.403	1	34486			17731	3169	14946	15386	17731	17731		
SLLENDQLLSHGGQDLSADAFHR	23	Unmodified	_SLLENDQLLSHGGQDLSADAFHR_			0	0	0	Q9UBB9	Q9UBB9	Q9UBB9	TFIP11	Tuftelin-interacting protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.745603	2522.21498	1.5038	0.0012658	4.0655	0.0034221	5.5693	0.0046879	842.083404027631	12.591	0.079811	12.591	12.556	12.635	0	315	22	1.11400032671325	0.0140074307741842	1.11400032671325	672.934158984241	0	8.46146847673424						177	10	5	NaN	NaN	NaN	1.4269E-09	1	36932	96.453	89.463	1	41353			17732	3169	14946	15386	17732	17732		
SLLEQYHLGLDQK	13	Unmodified	_SLLEQYHLGLDQK_			0	0	0	P08236	P08236	P08236	GUSB	Beta-glucuronidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.275346	1542.80421	-1.3119	-0.00067601	-0.63974	-0.00032964	-1.9517	-0.0010057	515.275035417912	11.66	0.11527	11.66	11.624	11.74	0	747	37	0.822982596624503	0.0244908762672863	0.822982596624503	498.864028942692	0	14.8455353213379						264	14	4	NaN	NaN	NaN	0.0010055	1	19825	57.293	50.546	1	73405			17733	577	14947	15387	17733	17733		
SLLEQYHLGLDQK	13	Unmodified	_SLLEQYHLGLDQK_			0	0	0	P08236	P08236	P08236	GUSB	Beta-glucuronidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.40938	1542.80421	1.5431	0.0011919	0.04077	3.1491E-05	1.5839	0.0012234	772.409658032183	11.669	0.10634	11.669	11.616	11.722	0	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	438.040463313338	0	8.10271756354672						288	13	5	NaN	NaN	NaN	0.000121	1	19826	84.999	70.636	1	71259			17734	577	14947	15387	17734	17734		
SLLGDSAPTLHLNK	14	Unmodified	_SLLGDSAPTLHLNK_			0	0	0	P52594	P52594	P52594	AGFG1	Arf-GAP domain and FG repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.404098	1464.79364	1.3818	0.0010134	1.3754	0.0010087	2.7571	0.0020221	733.404808780006	10.33	0.07982	10.33	10.285	10.365	0	396	40	1.05987478976334	0.0261143777195971	1.05987478976334	428.511960635273	0	10.5581558364015						146	10	3	NaN	NaN	NaN	0.058714	1	17424	37.504	29.503	1	28300			17735	1216	14948	15388	17735	17735		
SLLGMLSDLQVYK	13	Unmodified	_SLLGMLSDLQVYK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.899802	1465.78505	0.31271	0.0002295	0.85206	0.00062533	1.1648	0.00085483	733.900379940813	19.312	0.097514	19.312	19.277	19.375	0	429	43	1.03776581230406	0.0281639553291928	1.03776581230406	419.570552031807	0	11.3867369157525						210	12	2	NaN	NaN	NaN	0.015326	1	17459	57.293	47.042	1	109170			17736	1696	14949	15389	17736	17736		
SLLHGDFHAFSAGPGLFSYIR	21	Unmodified	_SLLHGDFHAFSAGPGLFSYIR_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	573.794461	2291.14874	-0.11699	-6.7128E-05	-1.7948	-0.0010298	-1.9118	-0.001097	574.044243980344	16.581	0.20397	16.581	16.528	16.732	0	621	40	0.908462957275599	0.026386663985959	0.908462957275599	732.102530068132	0	21.2642059970287						654	24	6	NaN	NaN	NaN	5.1773E-06	1	35576	94.507	81.162	1	324010			17737	576	14950	15390	17737	17737		
SLLHGDFHAFSAGPGLFSYIR	21	Unmodified	_SLLHGDFHAFSAGPGLFSYIR_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.723522	2291.14874	0.75107	0.00057436	-1.9763	-0.0015113	-1.2252	-0.00093695	765.056306811063	16.599	0.20393	16.599	16.537	16.741	0	546	58	0.959108205975751	0.0384317920683693	0.959108205975751	579.688526153539	0	23.2283164326462						1033	24	5	NaN	NaN	NaN	1.2583E-11	1	35578	103.63	97.799	1	402780			17738	576	14950	15390	17738	17738		
SLLIDFFR	8	Unmodified	_SLLIDFFR_			0	0	0	Q9H7B2	Q9H7B2	Q9H7B2	RPF2	Ribosome production factor 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.78711	1009.55967	-0.54283	-0.00027456	1.1828	0.00059822	0.63992	0.00032366	505.787555754331	18.311	0.1862	18.311	18.257	18.444	0	663	37	0.880024865079826	0.0243991920216602	0.880024865079826	357.295036961522	0	9.90620897333349						403	22	4	NaN	NaN	NaN	0.0095296	1	4503	78.178	39.856	1	162740			17739	2914	14951	15391	17739	17739		
SLLINAVEASCIR	13	Unmodified	_SLLINAVEASCIR_			0	0	0	Q96C36;P32322	Q96C36;P32322	P32322	PYCR2;PYCR1	Pyrroline-5-carboxylate reductase 2;Pyrroline-5-carboxylate reductase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.392676	1444.7708	1.3807	0.00099881	-0.71233	-0.00051529	0.6684	0.00048352	723.39253536697	13.673	0.23938	13.673	13.558	13.797	-1.7764E-15	435	79	1.03374239103424	0.0522540124591162	1.03374239103424	418.000722223503	0	21.1292630895535						655	28	4	NaN	NaN	NaN	0.0065377	1	16828	54.199	39.051	1	179780			17740	938;2490	14952	15392	17740	17740		
SLLIPYLDNLVK	12	Unmodified	_SLLIPYLDNLVK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.413403	1386.81225	0.33335	0.00023148	-0.49493	-0.00034369	-0.16159	-0.00011221	694.4130959158	19.144	0.2128	19.144	19.055	19.268	0	468	46	1.01159370163332	0.0302278047766038	1.01159370163332	409.206839588894	0	12.2276606115404						706	25	5	NaN	NaN	NaN	0.0030634	1	15059	62.271	21.769	1	419310			17741	74	14953	15393	17741	17741		
SLLLTTIPQIGSTEWSETLHNLK	23	Unmodified	_SLLLTTIPQIGSTEWSETLHNLK_			0	0	0	Q13126	Q13126	Q13126	MTAP	S-methyl-5-thioadenosine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	861.133916	2580.37992	1.7317	0.0014913	0.22075	0.00019009	1.9525	0.0016814	861.468494713171	19.02	0.14184	19.02	18.931	19.073	0	288	49	1.13199748998575	0.0319883593147245	1.13199748998575	683.721255605911	0	19.3208212817784						532	17	5	NaN	NaN	NaN	0.0038592	1	37165	53.773	51.179	1	139180			17742	1630	14954	15394	17742	17742		
SLLNLLSSQEEDFNSK	16	Unmodified	_SLLNLLSSQEEDFNSK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.454713	1822.89487	1.2182	0.0011116	-1.1038	-0.0010071	0.11444	0.00010442	912.454439604085	16.644	0.20391	16.644	16.555	16.759	0	276	46	1.13998907770044	0.0299499175476563	1.13998907770044	460.054281278098	0	12.086596320308						506	24	4	NaN	NaN	NaN	1.1635E-08	1	27801	126.32	114.84	1	114440			17743	3067	14955	15395	17743	17743		
SLLPLSTSLDHR	12	Unmodified	_SLLPLSTSLDHR_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.872434	1337.73031	1.4822	0.00099286	1.45	0.00097134	2.9322	0.0019642	669.873623767379	11.066	0.1685	11.066	11.012	11.181	0	465	25	1.01360860968299	0.0161159257109076	1.01360860968299	410.170367497122	0	6.52152626590913						178	20	2	NaN	NaN	NaN	0.039504	1	13538	22.898	19.795	1	42224			17744	2355	14956	15396	17744	17744		
SLLQALNEVK	10	Unmodified	_SLLQALNEVK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.826963	1113.63937	0.45895	0.00025601	-0.47343	-0.00026409	-0.014486	-8.0805E-06	557.826898103993	13.07	0.19502	13.07	12.99	13.185	0	600	46	0.922661313351899	0.0304166222504839	0.922661313351899	374.134532901802	0	12.3337877002709						396	23	3	NaN	NaN	NaN	0.02017	1	7093	55.235	29.981	1	185140			17745	1737	14957	15397	17745	17745		
SLLQGTILQYVK	12	Unmodified	_SLLQGTILQYVK_			0	0	0	Q7L576;Q96F07	Q7L576	Q7L576	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.903202	1361.79185	0.58473	0.00039873	-0.44047	-0.00030036	0.14426	9.8372E-05	681.902793096631	16.351	0.15961	16.351	16.307	16.466	0	438	31	1.03173026378327	0.0201198859944203	1.03173026378327	417.4281076973	0	8.14031170021065						290	19	4	NaN	NaN	NaN	0.054292	1	14268	33.723	30.378	1	125550			17746	2117	14958	15398	17746	17746		
SLLQQLENVTK	11	Unmodified	_SLLQQLENVTK_			0	0	0	Q9UPN9	Q9UPN9	Q9UPN9	TRIM33	E3 ubiquitin-protein ligase TRIM33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.861534	1271.70852	0.33555	0.0002137	-0.0027038	-1.722E-06	0.33285	0.00021198	636.861597259182	14.941	0.088679	14.941	14.905	14.994	0	558	25	0.951016745717027	0.016187402676465	0.951016745717027	385.045956475989	0	6.55392659960171						143	11	3	NaN	NaN	NaN	0.0036397	1	11552	47.561	36.201	1	36763			17747	3313	14959	15399	17747	17747		
SLLSMLVEVHK	11	Unmodified	_SLLSMLVEVHK_			0	0	0	O75976	O75976	O75976	CPD	Carboxypeptidase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.240808	1254.70059	-2.4927	-0.001045	-0.24426	-0.0001024	-2.7369	-0.0011474	419.241067402075	15.216	0.053208	15.216	15.18	15.234	-1.7764E-15	822	16	0.771863999559055	0.010242234393518	0.771863999559055	468.830535629778	0	6.22113771273428						48	7	2	NaN	NaN	NaN	0.069628	1	11070	8.4737	2.6077	1	8723			17748	376	14960	15400	17748	17748		
SLLSNLDEVK	10	Unmodified	_SLLSNLDEVK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.308603	1116.60265	-0.0015433	-8.6321E-07	1.4743	0.00082457	1.4727	0.00082371	559.308775323691	11.917	0.23059	11.917	11.784	12.015	0	609	55	0.916577990479294	0.0365024805192742	0.916577990479294	371.655708764563	0	14.8010921165163						612	27	4	NaN	NaN	NaN	0.00083359	1	7186	78.816	52.36	1	239670			17749	2370	14961	15401	17749	17749		
SLLSQMLHYDPNK	13	Unmodified	_SLLSQMLHYDPNK_			0	0	0	P24941	P24941	P24941	CDK2	Cyclin-dependent kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.929181	1544.76571	-0.32561	-0.00016799	-1.9174	-0.00098922	-2.243	-0.0011572	515.928053016022	14.409	0.11525	14.409	14.347	14.462	0	705	28	0.851531465363931	0.018336272903194	0.851531465363931	516.163565310297	0	11.1146990818129						269	14	4	NaN	NaN	NaN	0.04226	1	19879	12.018	7.1898	1	71890			17750	834	14962	15402	17750	17750		
SLLSQMLHYDPNK	13	Unmodified	_SLLSQMLHYDPNK_			0	0	0	P24941	P24941	P24941	CDK2	Cyclin-dependent kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.390133	1544.76571	2.0846	0.0016122	0.68472	0.00052955	2.7693	0.0021418	773.390393391311	14.409	0.10638	14.409	14.347	14.453	0	327	37	1.10599442759226	0.0240276252834357	1.10599442759226	446.941650724651	0	9.70976547372908						294	13	3	NaN	NaN	NaN	1.0091E-07	1	19881	112.7	76.462	1	69974			17751	834	14962	15402	17751	17751		
SLLSSASATVGHGLTAVK	18	Unmodified	_SLLSSASATVGHGLTAVK_			0	0	0	Q8IWE2	Q8IWE2	Q8IWE2	FAM114A1	Protein NOXP20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.972876	1697.9312	1.191	0.0010123	1.0388	0.00088299	2.2298	0.0018953	850.475426010899	12.431	0.062067	12.431	12.405	12.467	0	174	37	1.20774045859593	0.0238630200000793	1.20774045859593	487.666800113314	0	9.63551607603478						174	8	4	NaN	NaN	NaN	2.2141E-10	1	24445	128.46	110.73	1	36044			17752	2203	14963	15403	17752	17752		
SLLTEADAGHTEFTDEVYQNESR	23	Unmodified	_SLLTEADAGHTEFTDEVYQNESR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.396416	2611.16742	1.0861	0.00094646	0.74478	0.000649	1.8309	0.0015955	871.731502997464	12.183	0.08868	12.183	12.148	12.236	1.7764E-15	504	121	0.987393073566096	0.0806020433921173	0.987393073566096	596.34318093064	0	48.680186475652						492	11	5	NaN	NaN	NaN	3.1075E-24	1	37283	137.68	130.24	1	111110			17753	3136	14964	15404	17753	17753		
SLLVIPNTLAVNAAQDSTDLVAK	23	Unmodified	_SLLVIPNTLAVNAAQDSTDLVAK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.103957	2352.29004	0.78829	0.00061889	0.2474	0.00019423	1.0357	0.00081312	785.437756922029	18.062	0.070933	18.062	18.027	18.098	0	420	31	1.04379886199097	0.0201060050174831	1.04379886199097	630.777073784526	0	12.1502403118492						235	9	4	NaN	NaN	NaN	0.00052799	1	36072	64.56	62.828	1	64247			17754	747	14965	15405	17754	17754		
SLLVNPEGPTLMR	13	Unmodified	_SLLVNPEGPTLMR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.889769	1425.76499	2.4229	0.0017297	-0.54381	-0.00038822	1.8791	0.0013415	713.889865278656	12.768	0.24829	12.768	12.689	12.937	0	441	55	1.02971785871157	0.0362258060074347	1.02971785871157	416.426010862571	0	14.6500012195893						1043	29	4	NaN	NaN	NaN	1.6938E-05	1	16262	117.45	77.06	1	754260			17755	1127	14966	15406	17755	17755		
SLLVNPVLFPNREDYIHLMGYDK	23	Unmodified	_SLLVNPVLFPNREDYIHLMGYDK_			0	0	1	Q9BUB7	Q9BUB7	Q9BUB7	TMEM70	Transmembrane protein 70, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	684.107178	2732.39961	-0.22861	-0.0001564	0.28353	0.00019397	0.05492	3.7571E-05	684.357910545182	17.176	0.070921	17.176	17.14	17.211	0	555	22	0.953040030838688	0.0141629966659658	0.953040030838688	767.278789427417	0	11.4024244364255						158	9	4	NaN	NaN	NaN	0.014104	1	37696	16.417	11.324	1	32840			17756	2743	14967	15407	17756	17756		
SLLVPDHVITR	11	Unmodified	_SLLVPDHVITR_			0	0	0	P27144	P27144	P27144	AK4	Adenylate kinase 4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.366787	1248.71902	0.8979	0.00056152	1.5451	0.00096623	2.443	0.0015278	625.36801077683	9.2923	0.14192	9.2923	9.2213	9.3632	0	498	25	0.991429299781895	0.0161426739918176	0.991429299781895	401.487493904758	0	6.537109330259						217	17	3	NaN	NaN	NaN	0.0072277	1	10891	53.517	46.826	1	55153			17757	862	14968	15408	17757	17757		
SLMASEEEYSTK	12	Oxidation (M)	_SLM(Oxidation (M))ASEEEYSTK_	SLM(1)ASEEEYSTK	SLM(46)ASEEEYSTK	0	1	0	CON__Q3SX28	CON__Q3SX28	CON__Q3SX28			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.805765	1389.59698	2.364	0.0016449	0.11335	7.8868E-05	2.4774	0.0017238	695.805380515765	4.4677	0.16847	4.4677	4.3701	4.5386	0	534	43	0.967195187796614	0.0282887809416775	0.967195187796614	391.239144166729	0	11.4430660788909						238	20	2	NaN	NaN	NaN	0.0088979	1	15123	45.939	40.789	1	57173		+	17758	41	14969	15409	17758	17758	18	
SLMPYFLLTQAVR	13	Unmodified	_SLMPYFLLTQAVR_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.923612	1537.83267	1.1157	0.00085903	-0.95627	-0.00073625	0.15947	0.00012278	769.923041771283	18.869	0.12411	18.869	18.816	18.94	0	417	121	1.04580932352505	0.0803132877009227	1.04580932352505	422.637274024466	0	32.4565752267819						810	15	4	NaN	NaN	NaN	3.0132E-07	1	19671	117.99	114.64	1	239080			17759	191	14970	15410	17759	17759		
SLMVDHVTEVSQWMVGVK	18	Unmodified	_SLMVDHVTEVSQWMVGVK_			0	0	0	Q9HD15	Q9HD15	Q9HD15	SRA1	Steroid receptor RNA activator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.344666	2044.01217	-0.014589	-9.9548E-06	0.20089	0.00013708	0.1863	0.00012712	682.679187204613	15.642	0.088659	15.642	15.597	15.686	0	582	19	0.934820374997243	0.0121523258249554	0.934820374997243	565.420154526953	0	7.35025693661021						123	11	3	NaN	NaN	NaN	0.036914	1	32422	23.931	19.625	1	26640			17760	2968	14971	15411	17760	17760		
SLMYWLDPNLR	11	Unmodified	_SLMYWLDPNLR_			0	0	0	P48651	P48651	P48651	PTDSS1	Phosphatidylserine synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.358105	1406.70166	0.50121	0.00035303	-0.0051287	-3.6124E-06	0.49608	0.00034942	704.358241872658	17.521	0.19507	17.521	17.468	17.663	0	495	37	0.993446994398923	0.0242106659523326	0.993446994398923	401.810091141197	0	9.79225861846987						384	23	4	NaN	NaN	NaN	0.0017377	1	15673	76.572	70.874	1	88869			17761	1114	14972	15412	17761	17761		
SLNDLIEER	9	Unmodified	_SLNDLIEER_			0	0	0	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.782753	1087.55095	0.92683	0.00050492	3.1261	0.001703	4.0529	0.0022079	544.783773257291	10.081	0.23054	10.081	10.002	10.232	0	642	34	0.894250814548268	0.0223395647977513	0.894250814548268	362.720521085863	0	9.06123701812339						478	27	4	NaN	NaN	NaN	0.00012464	1	6401	111.39	48.512	1	248850			17762	2574	14973	15413	17762	17762		
SLNILTAFQK	10	Unmodified	_SLNILTAFQK_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.829506	1133.64446	0.65033	0.00036927	-1.5926	-0.00090434	-0.9423	-0.00053506	567.828625257686	14.967	0.23942	14.967	14.879	15.118	0	639	91	0.896281965493857	0.0608628136507996	0.896281965493857	363.359428409126	0	24.6742409542293						1345	28	4	NaN	NaN	NaN	2.7262E-07	1	7639	159.11	115.84	1	861790			17763	892	14974	15414	17763	17763		
SLNLSTEFISSTK	13	Unmodified	_SLNLSTEFISSTK_			0	0	0	P36952	P36952	P36952	SERPINB5	Serpin B5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.874839	1425.73512	1.7975	0.0012832	0.32187	0.00022977	2.1194	0.001513	713.874843913974	12.476	0.21281	12.476	12.431	12.644	0	420	40	1.04379886199097	0.0261396123563653	1.04379886199097	422.120560898278	0	10.5710671196612						552	25	4	NaN	NaN	NaN	0.0046243	1	16256	70.195	35.414	1	191680			17764	994	14975	15415	17764	17764		
SLNQSLAEWK	10	Unmodified	_SLNQSLAEWK_			0	0	0	P54709	P54709	P54709	ATP1B3	Sodium/potassium-transporting ATPase subunit beta-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.306395	1174.59824	0.96795	0.00056945	-0.011229	-6.6063E-06	0.95672	0.00056285	588.306852642231	9.5228	0.24827	9.5228	9.4342	9.6824	0	612	73	0.914549654013882	0.0486497581514337	0.914549654013882	370.60991338552	0	19.7147115802808						938	29	5	NaN	NaN	NaN	0.0064412	1	8725	57.888	0	1	350990			17765	1254	14976	15416	17765	17765		
SLNYCGHIYTPISCK	15	Unmodified	_SLNYCGHIYTPISCK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.951768	1811.83348	-0.59651	-0.00036086	0.30816	0.00018642	-0.28835	-0.00017444	604.952290857319	8.8931	0.13314	8.8931	8.8399	8.973	0	720	34	0.841341816837976	0.022426576308619	0.841341816837976	509.319497667086	0	13.5762805928593						294	16	4	NaN	NaN	NaN	8.4468E-05	1	27512	41.87	36.482	1	83401			17766	2452	14977	15417	17766	17766		
SLNYWCNLLGMK	12	Unmodified	_SLNYWCNLLGMK_			0	0	0	Q9HC38	Q9HC38	Q9HC38	GLOD4	Glyoxalase domain-containing protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.862697	1497.71084	0.31768	0.00023822	1.7039	0.0012777	2.0215	0.0015159	750.365660970843	17.3	0.21282	17.3	17.238	17.45	0	432	46	1.035754240522	0.0301735847803846	1.035754240522	418.67378456969	0	12.1968015575503						562	25	4	NaN	NaN	NaN	2.4451E-07	1	18465	148.9	135.1	1	143860			17767	2958	14978	15418	17767	17767		
SLPEEDVAEIQHAEEFLIK	19	Unmodified	_SLPEEDVAEIQHAEEFLIK_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.038953	2196.09503	-0.8166	-0.0005986	-0.47001	-0.00034453	-1.2866	-0.00094314	733.373018745324	17.034	0.08866	17.034	16.989	17.078	0	606	49	0.918606045818476	0.0324331596454394	0.918606045818476	555.353597053853	0	19.6078307506327						338	11	4	NaN	NaN	NaN	0.017966	1	34639	17.807	17.807	1	63419			17768	287	14979	15419	17768	17768		
SLPEEDVAEIQHAEEFLIKPESK	23	Unmodified	_SLPEEDVAEIQHAEEFLIKPESK_			0	0	1	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	660.336621	2637.31738	-0.058895	-3.8891E-05	-0.012989	-8.5772E-06	-0.071884	-4.7468E-05	660.587255754188	15.845	0.1685	15.845	15.783	15.952	0	615	46	0.912521036363781	0.0304250551653156	0.912521036363781	734.791514586459	0	24.4992405384795						623	20	6	NaN	NaN	NaN	4.3703E-05	1	37388	32.113	31.934	1	255940			17769	287	14980	15420	17769	17769		
SLPEEDVAEIQHAEEFLIKPESK	23	Unmodified	_SLPEEDVAEIQHAEEFLIKPESK_			0	0	1	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	880.113069	2637.31738	2.1186	0.0018646	-0.58804	-0.00051754	1.5305	0.001347	880.446223996389	15.854	0.18625	15.854	15.775	15.961	0	327	61	1.10599442759226	0.0400240026056418	1.10599442759226	667.938259045528	0	24.1715165587631						625	22	5	NaN	NaN	NaN	0.027429	1	37389	38.656	34.283	1	206080			17770	287	14980	15420	17770	17770		
SLPEETMDFMVQHTSFK	17	Unmodified	_SLPEETMDFMVQHTSFK_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.313143	2025.9176	0.98922	0.00066902	-1.3651	-0.00092322	-0.37586	-0.0002542	676.646824305183	15.571	0.19522	15.571	15.446	15.642	-1.7764E-15	564	34	0.946969335010767	0.0222623031474618	0.946969335010767	572.802860637583	0	13.4660230862726						431	23	4	NaN	NaN	NaN	0.013445	1	32072	33.526	33.007	1	98776			17771	617	14981	15421	17771	17771		
SLPEETMDFMVQHTSFK	17	Unmodified	_SLPEETMDFMVQHTSFK_			0	0	0	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1013.96608	2025.9176	0.82675	0.0008383	-0.035913	-3.6414E-05	0.79084	0.00080188	1014.46728165705	15.571	0.1508	15.571	15.482	15.633	0	75	46	1.27319752866042	0.0296880360637206	1.27319752866042	513.422923465182	0	11.9718409160064						425	18	4	NaN	NaN	NaN	0.0032511	1	32073	53.363	52.556	1	84900			17772	617	14981	15421	17772	17772		
SLPEYLYSSGLLQDR	15	Unmodified	_SLPEYLYSSGLLQDR_			0	0	0	Q68D91	Q68D91	Q68D91	MBLAC2	Metallo-beta-lactamase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.943784	1739.87302	2.1121	0.0018395	-0.35362	-0.00030798	1.7585	0.0015315	870.944365650887	15.517	0.12415	15.517	15.482	15.606	0	297	34	1.12600091227925	0.0219935068303474	1.12600091227925	454.572900263734	0	8.87890238614807						221	15	4	NaN	NaN	NaN	0.0017876	1	25593	59.731	50.469	1	55108			17773	2023	14982	15422	17773	17773		
SLPFSENVSAVQK	13	Unmodified	_SLPFSENVSAVQK_			0	0	0	Q16513	Q16513	Q16513	PKN2	Serine/threonine-protein kinase N2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.369724	1404.72489	1.4897	0.0010478	-2.1985	-0.0015464	-0.70875	-0.00049851	703.870083517732	10.046	0.11525	10.046	9.9928	10.108	0	480	28	1.00353128488872	0.0181467072344021	1.00353128488872	405.89435763487	0	7.33972740761385						213	14	3	NaN	NaN	NaN	0.047314	1	15612	30.068	18.111	1	53970			17774	1883	14983	15423	17774	17774		
SLPNEEIVQK	10	Unmodified	_SLPNEEIVQK_			0	0	0	P18583	P18583	P18583	SON	Protein SON	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.814053	1155.61355	0.65864	0.00038123	0.93959	0.00054385	1.5982	0.00092508	578.814501794113	6.1614	0.15964	6.1614	6.117	6.2767	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	367.390972822022	0	6.58102426838167						267	19	3	NaN	NaN	NaN	0.0057322	1	8221	33.426	21.359	1	73724			17775	754	14984	15424	17775	17775		
SLPSVETLGCTSVICSDK	18	Unmodified	_SLPSVETLGCTSVICSDK_			0	0	0	P16615;O14983;Q93084	P16615	P16615	ATP2A2;ATP2A1;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.968816	1951.92308	2.971	0.0029026	-0.74822	-0.00073099	2.2228	0.0021716	977.469587537236	12.839	0.23946	12.839	12.733	12.972	0	222	76	1.17589687683038	0.0498068956194959	1.17589687683038	474.308300280594	0	20.0900474089308						773	28	2	NaN	NaN	NaN	5.2279E-07	1	30746	110.14	107.51	1	440010			17776	730	14985	15425	17776	17776		
SLPVEEQPK	9	Unmodified	_SLPVEEQPK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.776939	1025.53933	1.3119	0.00067403	-0.40864	-0.00020995	0.90326	0.00046407	513.776961709164	4.3968	0.14187	4.3968	4.3435	4.4854	0	699	55	0.85560534332665	0.0366394639132938	0.85560534332665	347.30778858275	0	14.8727112164905						321	17	2	NaN	NaN	NaN	0.022642	1	4873	39.324	33.576	1	92384			17777	2064	14986	15426	17777	17777		
SLPVPQLVPETEDEK	15	Unmodified	_SLPVPQLVPETEDEK_			0	0	0	O00154	O00154	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.938167	1679.86178	2.7618	0.0023225	-1.5234	-0.001281	1.2385	0.0010415	840.937090353958	12.981	0.31036	12.981	12.839	13.15	0	345	46	1.09397730668811	0.0300490171163135	1.09397730668811	441.769486470401	0	12.1343822940916						817	36	4	NaN	NaN	NaN	0.0027088	1	23914	45.183	40.937	1	284220			17778	53	14987	15427	17778	17778		
SLPVSVPVWGFK	12	Unmodified	_SLPVSVPVWGFK_			0	0	0	Q96B36	Q96B36	Q96B36	AKT1S1	Proline-rich AKT1 substrate 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.374081	1314.73361	0.30825	0.00020295	-5.4197	-0.0035682	-5.1114	-0.0033652	658.369357640099	16.519	0.17733	16.519	16.475	16.652	0	516	58	0.979317271586824	0.0383839585153254	0.979317271586824	396.364815122877	0	15.5353643420985						471	21	3	NaN	NaN	NaN	0.039322	1	12806	29.755	20.241	1	131060			17779	2480	14988	15428	17779	17779		
SLPYNQPGTCYTLVALPK	18	Unmodified	_SLPYNQPGTCYTLVALPK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.52188	2021.0292	1.9059	0.0019278	-3.9255	-0.0039708	-2.0197	-0.002043	1012.02276234663	14.178	0.27488	14.178	14.01	14.285	0	186	70	1.1997861197946	0.0457720210854262	1.1997861197946	483.827403209743	0	18.458088267611						1202	32	5	NaN	NaN	NaN	0.0021393	1	32007	37.504	32.687	1	312930			17780	3452	14989	15429	17780	17780		
SLQALGEVIEAELR	14	Unmodified	_SLQALGEVIEAELR_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.95075	1526.83042	-2.0645	-0.0010528	1.719	0.00087662	-0.34545	-0.00017616	509.951223202675	18.816	0.062091	18.816	18.789	18.851	0	714	16	0.845418525735192	0.0101910644357553	0.845418525735192	512.51153305375	0	6.178050159093						40	8	2	NaN	NaN	NaN	0.035092	1	19334	38.584	24.129	1	7587.3			17781	3337	14990	15430	17781	17781		
SLQALGEVIEAELR	14	Unmodified	_SLQALGEVIEAELR_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.422487	1526.83042	0.74932	0.00057279	-0.3452	-0.00026388	0.40411	0.00030891	764.422085028864	18.816	0.12414	18.816	18.781	18.905	0	444	37	1.02770517576159	0.0241538670444676	1.02770517576159	415.347640608529	0	9.76179932251216						347	15	4	NaN	NaN	NaN	6.2976E-12	1	19335	165.72	129.21	1	133690			17782	3337	14990	15430	17782	17782		
SLQDIIAILGMDELSEEDK	19	Unmodified	_SLQDIIAILGMDELSEEDK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.02738	2118.04022	0.60862	0.00064516	1.427	0.0015127	2.0356	0.0021578	1060.53043148842	20.137	0.088688	20.137	20.093	20.182	0	117	82	1.24546401832526	0.0535631038620401	1.24546401832526	502.090546965917	0	21.5931795054561						394	11	6	NaN	NaN	NaN	1.5469E-14	1	33589	137.89	107.91	1	219250			17783	541	14991	15431	17783	17783		
SLQDIIAILGMDELSEEDK	19	Oxidation (M)	_SLQDIIAILGM(Oxidation (M))DELSEEDK_	SLQDIIAILGM(1)DELSEEDK	SLQDIIAILGM(130)DELSEEDK	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1068.02484	2134.03513	0.47161	0.0005037	1.9461	0.0020784	2.4177	0.0025821	1068.52819872635	20.031	0.070927	20.031	20.004	20.075	0	114	49	1.24744674793813	0.0317302057438846	1.24744674793813	502.865298559743	0	12.7909423076647						210	9	6	NaN	NaN	NaN	1.4532E-10	1	33796	129.53	118.32	1	83613			17784	541	14991	15432	17784	17784	112	
SLQELFLAHILSPWGAEVK	19	Unmodified	_SLQELFLAHILSPWGAEVK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.393002	2137.15718	0.05066	3.6141E-05	-0.95288	-0.00067978	-0.90222	-0.00064364	713.72661878586	19.933	0.035461	19.933	19.924	19.96	0	606	31	0.918606045818476	0.0202819613609688	0.918606045818476	555.449774764022	0	12.263810935062						129	5	4	NaN	NaN	NaN	3.6227E-07	1	33841	80.026	65.633	1	51800			17785	611	14992	15433	17785	17785		
SLQELFLAHILSPWGAEVK	19	Unmodified	_SLQELFLAHILSPWGAEVK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.393002	2137.15718	0.2737	0.00019525	0.42169	0.00030083	0.69538	0.00049608	713.727865383627	19.933	0.044346	19.933	19.924	19.969	0	501	31	0.98941132619024	0.0201839240087274	0.98941132619024	598.263309830072	0	12.2045309803722						105	6	4	NaN	NaN	NaN	0.024784	1	33842	10.645	9.8343	1	26333			17786	611	14992	15433	17786	17786		
SLSDWHLAVK	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLSDWHLAVK_			1	0	0	Q96S82	Q96S82	Q96S82	UBL7	Ubiquitin-like protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.316763	1196.61897	0.24808	0.00014868	1.502	0.0009002	1.7501	0.0010489	599.317257107923	13.7	0.11525	13.7	13.655	13.77	0	564	52	0.946969335010767	0.034395858934352	0.946969335010767	383.665598240203	0	13.9355175581095						289	14	4	NaN	NaN	NaN	0.0021326	1	9356	60.892	45.31	1	83471			17787	2619	14993	15434	17787	17787		
SLSEQPVMDTATATEQAK	18	Unmodified	_SLSEQPVMDTATATEQAK_			0	0	0	P18615	P18615	P18615	NELFE	Negative elongation factor E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.956762	1905.89897	2.8599	0.0027282	8.3438	0.0079596	11.204	0.010688	954.466514060194	8.0414	0.13315	8.0414	7.997	8.1302	0	276	55	1.13998907770044	0.0359473204858849	1.13998907770044	459.902928449816	0	14.5021371562009						515	16	4	NaN	NaN	NaN	0.0033703	1	29718	46.206	38.63	1	145820			17788	755	14994	15435	17788	17788		
SLSGGASYVDFLCHMHK	17	Unmodified	_SLSGGASYVDFLCHMHK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.962556	1907.86584	0.29196	0.00018596	-0.10592	-6.7469E-05	0.18603	0.0001185	637.297027426493	12.236	0.097545	12.236	12.201	12.298	0	615	22	0.912521036363781	0.0142022930717167	0.912521036363781	552.19791775458	0	8.59429684250688						224	12	4	NaN	NaN	NaN	8.0474E-05	1	29772	63.908	60.62	1	59900			17789	1247	14995	15436	17789	17789		
SLSIEIGHEVK	11	Unmodified	_SLSIEIGHEVK_			0	0	0	O15155	O15155	O15155	BET1	BET1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.335153	1210.65575	1.8422	0.001117	1.5896	0.00096385	3.4319	0.0020809	606.336064635446	7.66	0.10645	7.66	7.6245	7.7309	0	510	34	0.983355730988811	0.0222130658502994	0.983355730988811	398.354921616129	0	8.99845684201398						194	13	3	NaN	NaN	NaN	0.00051538	1	9759	107.08	91.199	1	54296			17790	150	14996	15437	17790	17790		
SLSLCNMFLDEMAK	14	Unmodified	_SLSLCNMFLDEMAK_			0	0	0	Q9Y2A7	Q9Y2A7	Q9Y2A7	NCKAP1	Nck-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.882969	1657.75139	1.5343	0.0012733	0.47575	0.00039482	2.0101	0.0016681	829.88315516727	18.036	0.070945	18.036	17.991	18.062	0	357	31	1.08596037261705	0.020047861495702	1.08596037261705	438.579935545913	0	8.09660280828581						182	9	3	NaN	NaN	NaN	0.00017534	1	23255	84.102	75.728	1	40847			17791	3340	14997	15438	17791	17791		
SLSNATIINEEVLNAMLK	18	Unmodified	_SLSNATIINEEVLNAMLK_			0	0	0	P61011	P61011	P61011	SRP54	Signal recognition particle 54 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.524615	1959.03468	1.131	0.001109	-3.0489	-0.0029896	-1.9179	-0.0018806	980.521541138478	18.435	0.070937	18.435	18.408	18.479	0	189	52	1.1977968526266	0.0338314842791501	1.1977968526266	483.129472754327	0	13.6458758648763						209	9	3	NaN	NaN	NaN	8.3356E-07	1	30897	91.457	78.774	1	40110			17792	1321	14998	15439	17792	17792		
SLSNVIAHEISHSWTGNLVTNK	22	Unmodified	_SLSNVIAHEISHSWTGNLVTNK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	602.564569	2406.22917	-0.67205	-0.00040495	-1.1245	-0.00067758	-1.7965	-0.0010825	602.814582588696	14.356	0.10639	14.356	14.311	14.418	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	682.742629306124	0	13.1337475741914						322	13	5	NaN	NaN	NaN	0.00019691	1	36380	61.867	58.227	1	110270			17793	614	14999	15440	17793	17793		
SLSNVIAHEISHSWTGNLVTNK	22	Unmodified	_SLSNVIAHEISHSWTGNLVTNK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.083667	2406.22917	1.3725	0.0011022	-0.76049	-0.00061074	0.61197	0.00049146	803.417452965855	14.356	0.10639	14.356	14.311	14.418	0	519	55	0.97729762293174	0.036351175801219	0.97729762293174	590.512066063923	0	21.964453225453						682	13	5	NaN	NaN	NaN	2.1552E-23	1	36381	217.82	210.17	1	265350			17794	614	14999	15440	17794	17794		
SLSPDCGGSIEVMQSFLK	18	Unmodified	_SLSPDCGGSIEVMQSFLK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.966076	1953.9176	1.1725	0.0011466	4.8621	0.0047549	6.0345	0.0059016	978.476616502528	16.635	0.23054	16.635	16.573	16.803	0	231	43	1.16991841121525	0.0279014290845747	1.16991841121525	471.89341437715	0	11.2542041483433						315	27	4	NaN	NaN	NaN	0.003138	1	30780	70.806	70.067	1	114120			17795	2329	15000	15441	17795	17795		
SLSPFAITYLDR	12	Unmodified	_SLSPFAITYLDR_			0	0	0	Q6NUQ4	Q6NUQ4	Q6NUQ4	TMEM214	Transmembrane protein 214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.86936	1381.72417	0.53996	0.00037358	2.6298	0.0018194	3.1697	0.002193	691.869662935925	15.677	0.23052	15.677	15.517	15.748	0	471	40	1.00957851518677	0.0262046696285547	1.00957851518677	408.406494920065	0	10.6006190826639						463	27	4	NaN	NaN	NaN	0.0020696	1	14885	64.906	38.327	1	137610			17796	2047	15001	15442	17796	17796		
SLSQIHEAAVR	11	Unmodified	_SLSQIHEAAVR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.830569	1209.64658	1.8121	0.0010979	-2.6213	-0.0015881	-0.80915	-0.00049021	605.829522895951	4.2726	0.11528	4.2726	4.2371	4.3524	0	552	28	0.955063035883597	0.0182070471487186	0.955063035883597	386.89727859262	0	7.37569849149236						129	14	3	NaN	NaN	NaN	0.0079935	1	9726	43.306	8.3531	1	34401			17797	3136	15002	15443	17797	17797		
SLSREDMESVLDK	13	Unmodified	_SLSREDMESVLDK_			0	0	1	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.580217	1507.71882	-1.5653	-0.00078827	-1.4803	-0.00074547	-3.0457	-0.0015337	503.579639530842	8.5116	0.070946	8.5116	8.4761	8.547	0	825	16	0.769815552739974	0.01024366127849	0.769815552739974	466.732418124475	0	6.21064199331994						99	9	3	NaN	NaN	NaN	0.0043382	1	18719	32.051	24.493	1	18950			17798	580	15003	15444	17798	17798		
SLSVLSSSTIIANPDIPEAYK	21	Unmodified	_SLSVLSSSTIIANPDIPEAYK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1103.08609	2204.15763	0.49838	0.00054976	-1.1512	-0.0012699	-0.65281	-0.0007201	1103.58746897795	15.695	0.14187	15.695	15.642	15.783	0	111	79	1.24942920585258	0.0515192334465751	1.24942920585258	503.560842063272	0	20.7639364081527						711	17	4	NaN	NaN	NaN	1.6894E-07	1	34728	105.78	85.045	1	142420			17799	865	15004	15445	17799	17799		
SLSVYHPQLAYCVVQFLEK	19	Unmodified	_SLSVYHPQLAYCVVQFLEK_			0	0	0	Q13362;Q14738	Q13362;Q14738	Q14738	PPP2R5C;PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform;Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.061035	2280.16128	0.13413	0.00010208	-0.86581	-0.00065893	-0.73168	-0.00055685	761.394636838343	18.302	0.088649	18.302	18.266	18.355	0	588	31	0.93076847747433	0.0202622968311691	0.93076847747433	562.576215244332	0	12.246962095631						221	11	4	NaN	NaN	NaN	3.0215E-05	1	35461	49.967	47.061	1	48240			17800	1772;1656	15005	15446	17800	17800		
SLTAVFMWPGK	11	Unmodified	_SLTAVFMWPGK_			0	0	0	Q99808	Q99808	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.825909	1235.63727	0.23876	0.00014775	-2.2047	-0.0013644	-1.966	-0.0012166	618.824291878032	15.996	0.11528	15.996	15.943	16.058	0	585	43	0.932794566565362	0.0283672188304905	0.932794566565362	377.786620450176	0	11.4888702375291						296	14	3	NaN	NaN	NaN	0.001226	1	10491	81.642	65.763	1	63698			17801	2676	15006	15447	17801	17801		
SLTFSPDSQLLVTASDDGYIK	21	Unmodified	_SLTFSPDSQLLVTASDDGYIK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1129.06536	2256.11616	0.31681	0.0003577	0.19682	0.00022222	0.51363	0.00057992	1129.56678009789	16.448	0.2128	16.448	16.315	16.528	0	69	67	1.27715511956461	0.0435514105448778	1.27715511956461	514.661030560819	0	17.5501107814101						618	25	4	NaN	NaN	NaN	3.4603E-16	1	35244	128.28	124.64	1	123980			17802	2830	15007	15448	17802	17802		
SLTGVVNAQALTSAFSPHTK	20	Unmodified	_SLTGVVNAQALTSAFSPHTK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.03928	2028.064	0.19034	0.0001932	-0.47843	-0.00048562	-0.28809	-0.00029242	1015.53972733129	14.347	0.062041	14.347	14.32	14.382	0	60	16	1.28308947459206	0.00988788466386747	1.28308947459206	517.408171978189	0	3.9873075338644						46	8	2	NaN	NaN	NaN	9.2853E-08	1	32124	104.15	101.08	1	9115.1			17803	189	15008	15449	17803	17803		
SLTMSGHVGFESLPDQLVNR	20	Unmodified	_SLTMSGHVGFESLPDQLVNR_			0	0	0	Q9P0V9	Q9P0V9	Q9P0V9	SEPT10	Septin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.700277	2186.079	0.54182	0.00039537	0.16179	0.00011806	0.70361	0.00051342	730.034615264579	13.806	0.070924	13.806	13.779	13.85	0	591	22	0.928742107665821	0.0141865549073745	0.928742107665821	561.497621363175	0	8.57688778195791						156	9	4	NaN	NaN	NaN	0.000856	1	34532	33.456	33.058	1	33540			17804	3149	15009	15450	17804	17804		
SLTNDWEDHLAVK	13	Unmodified	_SLTNDWEDHLAVK_			0	0	0	P08238;P07900	P08238;P07900	P08238	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.91945	1526.73652	-0.043118	-2.1987E-05	0.48596	0.0002478	0.44284	0.00022581	509.9195950131	10.41	0.38128	10.41	10.312	10.693	0	759	139	0.814815566123307	0.0938297233363465	0.814815566123307	493.959615665753	0	56.8816993737104						2480	44	6	NaN	NaN	NaN	1.2408E-05	1	19314	96.957	72.136	1	4387900			17805	579;567	15010	15451	17805	17805		
SLTNDWEDHLAVK	13	Unmodified	_SLTNDWEDHLAVK_			0	0	0	P08238;P07900	P08238;P07900	P08238	HSP90AB1;HSP90AA1	Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.375537	1526.73652	2.7199	0.002079	1.3574	0.0010376	4.0773	0.0031166	764.376531557527	10.41	0.28377	10.41	10.339	10.622	0	390	118	1.06389100039157	0.0783756903369932	1.06389100039157	429.972393560907	0	31.6755975553721						1324	33	6	NaN	NaN	NaN	1.5164E-25	1	19318	244.45	215.8	1	2038000			17806	579;567	15010	15451	17806	17806		
SLTPAVPVESKPDK	14	Unmodified	_SLTPAVPVESKPDK_			0	0	1	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.406306	1466.79806	2.5755	0.0018915	-5.1879	-0.0038101	-2.6125	-0.0019186	734.401681939423	6.0017	0.20401	6.0017	5.9307	6.1347	0	429	94	1.03776581230406	0.0623071805740214	1.03776581230406	419.567866110608	0	25.190741963998						730	24	3	NaN	NaN	NaN	0.0027632	1	17489	79.889	68.534	1	160250			17807	785	15011	15452	17807	17807		
SLTTSQYLMHEVAK	14	Unmodified	_SLTTSQYLMHEVAK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	536.608107	1606.80249	-0.075207	-4.0357E-05	-0.11102	-5.9574E-05	-0.18623	-9.9931E-05	536.942018387278	9.0174	0.079772	9.0174	8.9908	9.0706	0	702	28	0.853568545818287	0.018336272903194	0.853568545818287	517.221094362323	0	11.110891074863						138	10	3	NaN	NaN	NaN	0.064491	1	21820	9.5785	9.1754	1	31979			17808	3129	15012	15453	17808	17808		
SLTTSQYLMHEVAK	14	Unmodified	_SLTTSQYLMHEVAK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.408523	1606.80249	2.1712	0.0017465	0.48474	0.00038993	2.656	0.0021365	804.408921099364	9.0262	0.11526	9.0262	8.9908	9.106	0	306	31	1.12000185836644	0.0200037307887677	1.12000185836644	452.446917094424	0	8.08090295400524						201	14	4	NaN	NaN	NaN	0.00020008	1	21822	77.157	58.346	1	46118			17809	3129	15012	15453	17809	17809		
SLTYLSILR	9	Unmodified	_SLTYLSILR_			0	0	0	P09661	P09661	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.318774	1064.623	0.25579	0.00013642	-1.5588	-0.00083136	-1.3031	-0.00069494	533.317748625314	14.542	0.11527	14.542	14.498	14.613	0	648	40	0.890187667287968	0.0264049676271125	0.890187667287968	361.169735343282	0	10.7131063708021						268	14	3	NaN	NaN	NaN	0.0047803	1	5841	60.589	51.196	1	65614			17810	609	15013	15454	17810	17810		
SLVALLVETQMK	12	Unmodified	_SLVALLVETQMK_			0	0	0	Q92922;Q8TAQ2	Q92922;Q8TAQ2	Q8TAQ2	SMARCC1;SMARCC2	SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.383788	1330.75302	-0.047694	-3.1783E-05	0.6098	0.00040636	0.56211	0.00037458	666.384271725749	16.759	0.14185	16.759	16.706	16.847	0	438	31	1.03173026378327	0.0201254424104516	1.03173026378327	417.525924771426	0	8.14446784089205						276	17	3	NaN	NaN	NaN	6.7253E-08	1	13328	132.39	75.359	1	71921			17811	2333;2445	15014	15455	17811	17811		
SLVASLAEPDFVVTDFAK	18	Unmodified	_SLVASLAEPDFVVTDFAK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.001299	1907.98804	1.9759	0.001887	0.69148	0.00066036	2.6674	0.0025474	955.503560265223	18.381	0.1774	18.381	18.337	18.515	0	216	76	1.17988115188462	0.0498274288080602	1.17988115188462	475.992747236905	0	20.1015964092789						1184	21	6	NaN	NaN	NaN	1.8354E-14	1	29795	172.09	158.31	1	967910			17812	804	15015	15456	17812	17812		
SLVATGNLLDLEETAK	16	Unmodified	_SLVATGNLLDLEETAK_			0	0	0	Q5SW96	Q5SW96	Q5SW96	LDLRAP1	Low density lipoprotein receptor adapter protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.451442	1672.88833	0.80968	0.00067806	1.8056	0.0015121	2.6153	0.0021902	837.452853113535	14.799	0.079827	14.799	14.772	14.852	0	300	28	1.12400150285141	0.0179946865546097	1.12400150285141	453.909313234816	0	7.26685488867935						111	10	3	NaN	NaN	NaN	0.0050016	1	23712	45.183	37.608	1	16801			17813	1982	15016	15457	17813	17813		
SLVEASSSGVSVLSLCEK	18	Unmodified	_SLVEASSSGVSVLSLCEK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.472048	1850.92954	1.2648	0.0011718	-0.43148	-0.00039975	0.83337	0.00077209	926.471957764973	13.442	0.31923	13.442	13.38	13.7	0	87	109	1.26527909472281	0.0713930500993993	1.26527909472281	510.55794723181	0	28.8081019099998						1909	37	5	NaN	NaN	NaN	1.8386E-34	1	28525	193.62	164.3	1	411860			17814	3319	15017	15458	17814	17814		
SLVEASSSGVSVLSLCEK	18	Unmodified	_SLVEASSSGVSVLSLCEK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.472048	1850.92954	2.0855	0.0019321	0.60765	0.00056297	2.6931	0.0024951	926.473303394602	13.434	0.3281	13.434	13.371	13.7	0	255	46	1.15396378101328	0.029933448623392	1.15396378101328	465.640645698123	0	12.0785683002363						996	38	5	NaN	NaN	NaN	4.0747E-07	1	28526	99.668	91.3	1	273310			17815	3319	15017	15458	17815	17815		
SLVEIIEHGLVDEQQK	16	Unmodified	_SLVEIIEHGLVDEQQK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.994907	1835.96289	-0.4881	-0.00029921	-2.3255	-0.0014255	-2.8136	-0.0017247	613.327410800305	16.546	0.21278	16.546	16.475	16.688	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	531.452937104519	0	13.5410332946446						542	25	5	NaN	NaN	NaN	1.2273E-08	1	28141	104.04	93.07	1	240620			17816	343	15018	15459	17816	17816		
SLVEIIEHGLVDEQQK	16	Unmodified	_SLVEIIEHGLVDEQQK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.988723	1835.96289	1.5433	0.0014183	1.9228	0.0017671	3.4661	0.0031853	918.990927337773	16.519	0.25715	16.519	16.395	16.652	0	189	94	1.1977968526266	0.0617520914842089	1.1977968526266	483.357209847873	0	24.9193497015998						999	30	3	NaN	NaN	NaN	4.6456E-09	1	28142	128.41	113.96	1	260610			17817	343	15018	15459	17817	17817		
SLVHDLFQK	9	Unmodified	_SLVHDLFQK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.800749	1085.58694	0.36309	0.00019745	2.9721	0.0016162	3.3351	0.0018137	543.802415175043	9.5051	0.23052	9.5051	9.4342	9.6647	0	636	55	0.898312834727904	0.0365480561699901	0.898312834727904	364.376379876099	0	14.8247335270046						530	21	4	NaN	NaN	NaN	0.00015486	1	6361	110.22	82.482	1	186900			17818	3042	15019	15460	17818	17818		
SLVQANPEVAMDSIIHMTQHISPTQR	26	Unmodified	_SLVQANPEVAMDSIIHMTQHISPTQR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	726.618013	2902.44295	0.47374	0.00034423	0.4363	0.00031703	0.91004	0.00066125	726.869340031192	17.69	0.16845	17.69	17.601	17.77	0	507	34	0.985374541851584	0.0222069226755673	0.985374541851584	793.075641781258	0	17.8731727935843						389	20	5	NaN	NaN	NaN	0.021779	1	38079	20.03	19.905	1	76942			17819	1625	15020	15461	17819	17819		
SLVQANPEVAMDSIIHMTQHISPTQR	26	Unmodified	_SLVQANPEVAMDSIIHMTQHISPTQR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	968.488258	2902.44295	1.3854	0.0013417	-0.037479	-3.6298E-05	1.3479	0.0013054	968.82259410786	17.69	0.053217	17.69	17.663	17.716	0	315	16	1.11400032671325	0.0100039300359205	1.11400032671325	672.450893408966	0	6.03873403709258						46	7	2	NaN	NaN	NaN	0.007831	1	38080	14.852	11.624	1	9643.4			17820	1625	15020	15461	17820	17820		
SLVQGELVTASK	12	Unmodified	_SLVQGELVTASK_			0	0	0	P35611	P35611	P35611	ADD1	Alpha-adducin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.34826	1230.68197	1.2703	0.00078295	-1.2262	-0.00075577	0.044099	2.718E-05	616.347861391579	7.9172	0.062063	7.9172	7.8818	7.9438	0	540	25	0.963152256458504	0.0161739645709869	0.963152256458504	390.09899062816	0	6.55083057874702						108	8	3	NaN	NaN	NaN	0.06914	1	10337	20.336	8.3781	1	26992			17821	975	15021	15462	17821	17821		
SLVSVTK	7	Unmodified	_SLVSVTK_			0	0	0	P08238;Q58FF7;Q58FF8	P08238;Q58FF8	P08238	HSP90AB1;HSP90AB3P;HSP90AB2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	367.226354	732.438155	0.09801	3.5992E-05	-1.3364	-0.00049077	-1.2384	-0.00045478	367.225856224227	4.3701	0.2128	4.3701	4.3258	4.5386	0	885	31	0.728786607772777	0.0205430923545996	0.728786607772777	297.391890655597	0	8.38290524289067						243	25	2	NaN	NaN	NaN	0.027029	1	505	51.43	4.5947	1	76341			17822	579;1959	15022	15463	17822	17822		
SLVSWHYCMIDIEK	14	Unmodified	_SLVSWHYCMIDIEK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.923483	1779.83241	1.8698	0.0016659	2.3615	0.0021039	4.2314	0.0037698	890.924439644541	13.948	0.11528	13.948	13.921	14.036	0	243	28	1.16194328902838	0.0179501929154187	1.16194328902838	468.999772435414	0	7.24530747067945						227	14	4	NaN	NaN	NaN	9.9422E-08	1	26668	87.573	83.837	1	47455			17823	718	15023	15464	17823	17823		
SLVTEAENSQHQQK	14	Unmodified	_SLVTEAENSQHQQK_			0	0	0	P11171	P11171	P11171	EPB41	Protein 4.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.892083	1597.76961	2.9813	0.0023847	-3.2969	-0.0026372	-0.31563	-0.00025247	799.889696653454	4.2549	0.03548	4.2549	4.2371	4.2726	0	327	19	1.10599442759226	0.0120138111036086	1.10599442759226	446.80993953795	0	4.85345140889143						56	5	3	NaN	NaN	NaN	9.0521E-08	1	21505	101.45	97.462	1	9534.2			17824	642	15024	15465	17824	17824		
SLWGLVSK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SLWGLVSK_			1	0	0	P42226	P42226	P42226	STAT6	Signal transducer and activator of transcription 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.26601	930.517468	-2.4298	-0.0011329	2.2718	0.0010593	-0.15795	-7.3647E-05	466.266980721946	18.089	0.05317	18.089	18.071	18.124	0	741	16	0.827064408645228	0.0102024023462217	0.827064408645228	336.176048555844	0	4.14696034635062						45	7	2	NaN	NaN	NaN	0.0039774	1	2890	65.156	52.329	1	6667.3			17825	1045	15025	15466	17825	17825		
SLYDEVAAQGEVVRK	15	Unmodified	_SLYDEVAAQGEVVRK_			0	0	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.293176	1662.8577	0.4956	0.0002752	-1.2129	-0.00067351	-0.71728	-0.0003983	555.292510686595	9.7622	0.070942	9.7622	9.7356	9.8066	0	666	25	0.877991458330206	0.0162683841309829	0.877991458330206	531.86707973965	0	9.85501382471818						128	9	3	NaN	NaN	NaN	0.055775	1	23423	57.003	49.446	1	30977			17826	565	15026	15467	17826	17826		
SLYDEVAAQGEVVRK	15	Unmodified	_SLYDEVAAQGEVVRK_			0	0	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.436126	1662.8577	2.972	0.002474	-1.1848	-0.00098624	1.7872	0.0014878	832.434820542193	9.7622	0.062083	9.7622	9.7179	9.78	0	282	40	1.13599383354359	0.0259780251845936	1.13599383354359	458.774960875192	0	10.4913135404087						149	8	3	NaN	NaN	NaN	1.4242E-07	1	23424	130.71	109.56	1	34226			17827	565	15026	15467	17827	17827		
SLYHDISGDTSGDYR	15	Unmodified	_SLYHDISGDTSGDYR_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.584907	1684.73289	-0.11409	-6.4188E-05	0.98557	0.00055447	0.87147	0.00049028	562.585155451019	6.8796	0.088677	6.8796	6.8441	6.9328	0	735	40	0.831145085810763	0.0265188764600823	0.831145085810763	503.43464891413	0	16.0628047836625						257	11	4	NaN	NaN	NaN	0.00012228	1	24031	79.889	78.837	1	70382			17828	1176	15027	15468	17828	17828		
SLYHDISGDTSGDYR	15	Unmodified	_SLYHDISGDTSGDYR_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.373723	1684.73289	2.4937	0.0021032	-0.4374	-0.00036889	2.0563	0.0017343	843.373210003562	6.8707	0.15071	6.8707	6.8264	6.9771	0	375	34	1.07392668217569	0.0220754584082121	1.07392668217569	433.662388104753	0	8.91429198166276						399	18	4	NaN	NaN	NaN	0.00018282	1	24032	49.097	44.569	1	126850			17829	1176	15027	15468	17829	17829		
SLYHDISGDTSGDYRK	16	Unmodified	_SLYHDISGDTSGDYRK_			0	0	1	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.421204	1812.82786	1.8697	0.0016966	-1.384	-0.0012558	0.4857	0.00044073	907.42039185965	5.4608	0.053171	5.4608	5.4342	5.4873	0	270	34	1.14398322290989	0.0219693125101945	1.14398322290989	461.685518483645	0	8.86631310133936						112	7	3	NaN	NaN	NaN	0.00071814	1	27544	39.166	38.489	1	16009			17830	1176	15028	15469	17830	17830		
SLYPLTFIQVK	11	Unmodified	_SLYPLTFIQVK_			0	0	0	P16278	P16278	P16278	GLB1	Beta-galactosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.881739	1307.74892	0.42841	0.00028056	-2.3739	-0.0015546	-1.9455	-0.001274	654.8799744434	16.581	0.17733	16.581	16.51	16.688	0	510	46	0.983355730988811	0.0302947379404193	0.983355730988811	398.021418105683	0	12.2620473712609						418	21	3	NaN	NaN	NaN	0.044803	1	12602	36.24	32.895	1	135020			17831	725	15029	15470	17831	17831		
SLYQSAGVAPESFEYIEAHGTGTK	24	Unmodified	_SLYQSAGVAPESFEYIEAHGTGTK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.074726	2541.20235	2.9229	0.0024789	0.98916	0.00083888	3.9121	0.0033177	848.4098533692	12.777	0.204	12.777	12.706	12.91	0	345	157	1.09397730668811	0.104335453212933	1.09397730668811	660.811809238049	0	63.0233362098123						2051	24	7	NaN	NaN	NaN	1.9261E-24	1	36992	170.08	158.6	1	1129300			17832	1127	15030	15471	17832	17832		
SLYSDHELR	9	Unmodified	_SLYSDHELR_			0	0	0	Q9H2W6	Q9H2W6	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.275095	1118.53564	1.6054	0.00089947	1.8263	0.0010232	3.4317	0.0019227	560.276071040195	4.6539	0.15962	4.6539	4.6095	4.7691	0	597	28	0.924688525662974	0.018242384517949	0.924688525662974	374.936480736603	0	7.3967993130442						160	19	3	NaN	NaN	NaN	0.0077402	1	7219	65.156	40.305	1	43736			17833	2876	15031	15472	17833	17833		
SLYVAEYHSEPVEDEKP	17	Unmodified	_SLYVAEYHSEPVEDEKP_			0	0	1	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.465278	1990.916	2.3902	0.0023817	0.029681	2.9576E-05	2.4199	0.0024113	996.966760432736	8.0237	0.12431	8.0237	7.9881	8.1124	0	159	58	1.21767724410157	0.037749440202328	1.21767724410157	491.092855671301	0	15.2244615547796						395	15	4	NaN	NaN	NaN	7.8553E-06	1	31471	74.733	70.883	1	107440			17834	847	15032	15473	17834	17834		
SMAASGNLGHTPFVDEL	17	Unmodified	_SMAASGNLGHTPFVDEL_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.411794	1744.80903	2.2055	0.0019263	1.6735	0.0014617	3.879	0.003388	873.413400552241	14.125	0.20393	14.125	14.036	14.24	3.5527E-15	315	73	1.11400032671325	0.0480354266011112	1.11400032671325	449.718132160489	0	19.3917378752661						994	24	5	NaN	NaN	NaN	3.531E-07	1	25739	132.9	119.73	1	349340			17835	811	15033	15474	17835	17835		
SMAASGNLGHTPFVDEL	17	Oxidation (M)	_SM(Oxidation (M))AASGNLGHTPFVDEL_	SM(1)AASGNLGHTPFVDEL	SM(78)AASGNLGHTPFVDEL	0	1	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.409251	1760.80395	2.0879	0.0018403	1.9412	0.001711	4.0291	0.0035512	881.410706241228	13.123	0.18622	13.123	13.043	13.23	1.7764E-15	303	40	1.12200181823275	0.026003062393495	1.12200181823275	452.915870952896	0	10.4965958699981						363	22	3	NaN	NaN	NaN	0.00067842	1	26161	78.157	67.185	1	87992			17836	811	15033	15475	17836	17836	271	
SMASGGGVPTDEEQATGLER	20	Unmodified	_SMASGGGVPTDEEQATGLER_			0	0	0	P10606	P10606	P10606	COX5B	Cytochrome c oxidase subunit 5B, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.452376	1990.8902	3.4243	0.0034121	-1.3303	-0.0013256	2.094	0.0020866	996.450772337074	7.6865	0.11535	7.6865	7.6422	7.7576	0	258	49	1.15196821829984	0.0319355989061636	1.15196821829984	464.592256123511	0	12.8797233385203						248	14	2	NaN	NaN	NaN	0.002171	1	31469	44.571	42.861	1	59152			17837	629	15034	15476	17837	17837		
SMATVDEEEQAVLDR	15	Unmodified	_SMATVDEEEQAVLDR_			0	0	0	Q8IVD9	Q8IVD9	Q8IVD9	NUDCD3	NudC domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.890891	1691.76723	2.4892	0.0021081	0.22014	0.00018644	2.7094	0.0022945	846.891935048291	10.888	0.18621	10.888	10.8	10.986	0	360	46	1.08395544855938	0.0300780138159316	1.08395544855938	437.697253533899	0	12.1453921897664						484	22	4	NaN	NaN	NaN	1.6106E-06	1	24249	82.437	74.879	1	108350			17838	2196	15035	15477	17838	17838		
SMCGYQTFFAGK	12	Unmodified	_SMCGYQTFFAGK_			0	0	0	P15586	P15586	P15586	GNS	N-acetylglucosamine-6-sulfatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.804848	1395.59514	0.85463	0.00059722	4.6347	0.0032387	5.4893	0.003836	698.80757036353	11.456	0.088671	11.456	11.447	11.536	0	498	22	0.991429299781895	0.0141277691793039	0.991429299781895	401.025060208415	0	5.71456732919569						175	11	4	NaN	NaN	NaN	0.0023971	1	15301	46.033	38.386	1	44425			17839	716	15036	15478	17839	17839		
SMDELNHDFQALALEGR	17	Unmodified	_SMDELNHDFQALALEGR_			0	0	0	Q14671	Q14671	Q14671	PUM1	Pumilio homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.307268	1944.89997	0.80836	0.00052487	-1.1252	-0.00073061	-0.31685	-0.00020573	649.306172992257	14.489	0.079799	14.489	14.444	14.524	0	603	25	0.920633820089869	0.0162210713020401	0.920633820089869	557.030725907099	0	9.81458091718173						164	10	4	NaN	NaN	NaN	6.3185E-05	1	30617	104	102.29	1	37239			17840	1762	15037	15479	17840	17840		
SMDFEEAER	9	Unmodified	_SMDFEEAER_			0	0	0	O43396	O43396	O43396	TXNL1	Thioredoxin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.229496	1112.44444	0.81971	0.00045677	0.39502	0.00022012	1.2147	0.00067689	557.229814072283	6.1614	0.13302	6.1614	6.1259	6.2589	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	356.025802125251	0	9.07127781924828						322	16	4	NaN	NaN	NaN	0.00058474	1	7047	60.892	45.393	1	101940			17841	198	15038	15480	17841	17841		
SMDIDDFIR	9	Unmodified	_SMDIDDFIR_			0	0	0	Q9UNQ2	Q9UNQ2	Q9UNQ2	DIMT1	Probable dimethyladenosine transferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.258056	1110.50156	-0.1332	-7.4096E-05	-1.1827	-0.00065787	-1.3159	-0.00073196	556.257632675504	14.107	0.14189	14.107	14.054	14.196	0	660	43	0.882057989648486	0.0284657258071274	0.882057989648486	357.682446695664	0	11.5431077924011						455	17	5	NaN	NaN	NaN	0.0066121	1	6995	56.378	44.312	1	158040			17842	3304	15039	15481	17842	17842		
SMDLSEYIIR	10	Unmodified	_SMDLSEYIIR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.807913	1225.60127	0.94612	0.00058074	-0.34299	-0.00021053	0.60314	0.00037021	613.807158908147	14.276	0.18618	14.276	14.169	14.356	0	549	49	0.957085760909907	0.0323703311033066	0.957085760909907	387.659739371431	0	13.1113371772919						387	22	4	NaN	NaN	NaN	0.0096326	1	10160	52.591	37.009	1	94546			17843	2841	15040	15482	17843	17843		
SMEAEMIQLQEELAAAER	18	Unmodified	_SMEAEMIQLQEELAAAER_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.65909	2047.95544	0.10362	7.084E-05	-0.067128	-4.5893E-05	0.036491	2.4947E-05	683.993766158171	18.577	0.088664	18.577	18.541	18.63	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	566.637929266557	0	9.80021574040438						215	11	4	NaN	NaN	NaN	5.4255E-07	1	32498	115.79	97.693	1	61852			17844	972	15041	15483	17844	17844		
SMEAEMIQLQEELAAAER	18	Unmodified	_SMEAEMIQLQEELAAAER_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.985	2047.95544	1.3397	0.0013731	-0.31839	-0.00032635	1.0213	0.0010468	1024.98453753801	18.577	0.1064	18.577	18.541	18.648	0	231	67	1.16991841121525	0.0438270504083127	1.16991841121525	471.740578047275	0	17.6721708928816						581	13	6	NaN	NaN	NaN	7.2694E-14	1	32499	102.26	93.103	1	183660			17845	972	15041	15483	17845	17845		
SMEAHNILSK	10	Unmodified	_SMEAHNILSK_			0	0	0	Q9NP77	Q9NP77	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.287148	1128.55974	2.1319	0.0012051	1.4618	0.00082633	3.5936	0.0020314	565.287736939797	4.4145	0.10641	4.4145	4.379	4.4854	0	600	40	0.922661313351899	0.0263574177216448	0.922661313351899	374.074048620389	0	10.6860727935974						235	13	3	NaN	NaN	NaN	0.00382	1	7485	58.889	44.895	1	52173			17846	2978	15042	15484	17846	17846		
SMEEDPQTSR	10	Unmodified	_SMEEDPQTSR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.25096	1178.48737	1.5455	0.00091225	-0.82965	-0.0004897	0.71588	0.00042255	590.250561205985	2.5168	0.19507	2.5168	2.4636	2.6587	0	660	28	0.882057989648486	0.0182955837794518	0.882057989648486	357.429379905974	0	7.41377465206483						332	23	3	NaN	NaN	NaN	5.5876E-05	1	8834	70.389	64.641	1	74523			17847	1465	15043	15485	17847	17847		
SMEMLVEHQAHDILT	15	Unmodified	_SMEMLVEHQAHDILT_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.279773	1752.81749	-0.07726	-4.5219E-05	-6.9065	-0.0040422	-6.9837	-0.0040874	585.274106466433	12.875	0.14189	12.875	12.83	12.972	0	756	34	0.816857749704129	0.0224608985391257	0.816857749704129	494.6240198721	0	13.6005319523328						339	17	5	NaN	NaN	NaN	0.044126	1	25967	28.228	21.481	1	108620			17848	3300	15044	15486	17848	17848		
SMEMLVEHQAHDILT	15	Unmodified	_SMEMLVEHQAHDILT_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.416022	1752.81749	3.3191	0.0029122	-0.70455	-0.00061818	2.6145	0.002294	877.41534133634	12.884	0.15077	12.884	12.83	12.981	0	234	43	1.16792504164217	0.0279129335847876	1.16792504164217	471.470383278582	0	11.2679504475266						614	18	5	NaN	NaN	NaN	2.5012E-06	1	25968	110.58	96.804	1	235590			17849	3300	15044	15486	17849	17849		
SMETHIMHTFK	11	Unmodified	_SMETHIMHTFK_			0	0	0	Q969G6	Q969G6	Q969G6	RFK	Riboflavin kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.549535	1360.62678	-0.81071	-0.00036851	-0.054381	-2.4719E-05	-0.86509	-0.00039323	454.549459315863	6.0461	0.079806	6.0461	6.0195	6.0993	0	825	19	0.769815552739974	0.0122932499633859	0.769815552739974	467.190457189623	0	7.46060410224078						74	10	3	NaN	NaN	NaN	0.0028607	1	14217	44.57	35.056	1	13136			17850	2459	15045	15487	17850	17850		
SMETHIMHTFK	11	Unmodified	_SMETHIMHTFK_			0	0	0	Q969G6	Q969G6	Q969G6	RFK	Riboflavin kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.320665	1360.62678	2.5463	0.0017348	-1.4305	-0.00097461	1.1158	0.00076022	681.320043146093	6.0461	0.079806	6.0461	6.0195	6.0993	0	414	25	1.04781950764076	0.0160825837476568	1.04781950764076	423.9413124675	0	6.50691422724276						143	10	3	NaN	NaN	NaN	0.00081968	1	14218	90.263	82.08	1	31932			17851	2459	15045	15487	17851	17851		
SMFTQALNLDSTSVR	15	Unmodified	_SMFTQALNLDSTSVR_			0	0	0	O60287	O60287	O60287	URB1	Nucleolar pre-ribosomal-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.414337	1668.81412	2.3278	0.0019447	-4.849	-0.0040509	-2.5212	-0.0021062	835.409207980295	14.356	0.18619	14.356	14.232	14.418	0	348	40	1.09197348738011	0.0260604263960942	1.09197348738011	440.984200348009	0	10.5242814297462						198	22	2	NaN	NaN	NaN	0.0010138	1	23595	66.619	64.483	1	45698			17852	253	15046	15488	17852	17852		
SMGFIGHYLDQK	12	Unmodified	_SMGFIGHYLDQK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.339912	1394.66527	1.746	0.0012193	0.98746	0.00068958	2.7334	0.0019089	698.34070690088	11.128	0.097532	11.128	11.083	11.181	0	429	31	1.03776581230406	0.0201171086492766	1.03776581230406	419.770562161906	0	8.13725978121232						274	12	4	NaN	NaN	NaN	5.0376E-05	1	15282	117.99	108.24	1	94670			17853	1235	15047	15489	17853	17853		
SMGGTLDLYSIDEHFQPK	18	Unmodified	_SMGGTLDLYSIDEHFQPK_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.991057	2036.95134	0.50259	0.00034175	-6.8662	-0.0046689	-6.3636	-0.0043272	680.320496121057	12.094	0.088693	12.094	12.059	12.148	0	558	40	0.951016745717027	0.0263099961420051	0.951016745717027	575.229892754703	0	15.9138062787018						335	11	4	NaN	NaN	NaN	0.051122	1	32278	14.363	2.6833	1	83623			17854	2254	15048	15490	17854	17854		
SMGGTLDLYSIDEHFQPK	18	Unmodified	_SMGGTLDLYSIDEHFQPK_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.48295	2036.95134	0.69304	0.00070654	-0.03701	-3.7731E-05	0.65603	0.00066881	1019.9844787218	14.232	0.070908	14.232	14.196	14.267	0	84	52	1.26725910986255	0.0336648790811453	1.26725910986255	511.009387614071	0	13.5750211692885						265	9	3	NaN	NaN	NaN	1.5769E-10	1	32282	106.97	98.604	1	49589			17855	2254	15048	15490	17855	17855		
SMGGTLDLYSIDEHFQPK	18	Unmodified	_SMGGTLDLYSIDEHFQPK_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.991057	2036.95134	0.80285	0.00054593	1.3026	0.00088574	2.1054	0.0014317	680.326687554472	14.232	0.12414	14.232	14.187	14.311	0	549	28	0.957085760909907	0.0182020073361659	0.957085760909907	578.900751878611	0	11.0096254306288						236	15	4	NaN	NaN	NaN	0.0011224	1	32283	39.82	38.877	1	58023			17856	2254	15048	15490	17856	17856		
SMGLPTSDEQK	11	Oxidation (M)	_SM(Oxidation (M))GLPTSDEQK_	SM(1)GLPTSDEQK	SM(46)GLPTSDEQK	0	1	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.77681	1207.53907	1.4542	0.00087948	0.34652	0.00020957	1.8007	0.001089	604.776924190939	3.3237	0.19504	3.3237	3.2351	3.4301	0	624	31	0.906433495720521	0.0202988394656143	0.906433495720521	367.204605132116	0	8.22324788945059						303	23	2	NaN	NaN	NaN	0.025947	1	9663	46.033	26.777	1	82502			17857	3332	15049	15491	17857	17857	646	
SMGSQEDDSGNKPSSYS	17	Unmodified	_SMGSQEDDSGNKPSSYS_			0	0	1	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.35487	1774.69519	3.1852	0.0028295	-1.5973	-0.001419	1.5878	0.0014106	888.353953040482	3.2617	0.062057	3.2617	3.2439	3.306	0	396	28	1.05987478976334	0.0180766890154731	1.05987478976334	427.81104571604	0	7.29652908578004						103	8	3	NaN	NaN	NaN	2.1461E-12	1	26525	146.34	134.32	1	18383			17858	3306	15050	15492	17858	17858		
SMLQATAEANNLAAAASAK	19	Unmodified	_SMLQATAEANNLAAAASAK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.962182	1831.90981	1.8404	0.0016876	1.6421	0.0015057	3.4825	0.0031933	916.962152483482	11.642	0.21288	11.642	11.536	11.749	0	246	61	1.1599488233373	0.0399030432867902	1.1599488233373	468.091836973432	0	16.1026835470245						994	25	6	NaN	NaN	NaN	7.6175E-11	1	28026	128.28	116.26	1	323090			17859	2029	15051	15493	17859	17859		
SMLQATAEANNLAAAASAK	19	Oxidation (M)	_SM(Oxidation (M))LQATAEANNLAAAASAK_	SM(1)LQATAEANNLAAAASAK	SM(91)LQATAEANNLAAAASAK	0	1	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.959639	1847.90473	1.7493	0.001618	0.82481	0.00076291	2.5741	0.0023809	924.961207137361	9.5051	0.11528	9.5051	9.4696	9.5849	0	237	49	1.16593139812432	0.0319048822592995	1.16593139812432	470.47547545493	0	12.8742262833177						317	14	3	NaN	NaN	NaN	1.6522E-06	1	28431	91.457	87.721	1	69700			17860	2029	15051	15494	17860	17860	583	
SMMGGGLAEIPGLSINFAK	19	Unmodified	_SMMGGGLAEIPGLSINFAK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.984072	1891.95359	1.6419	0.0015548	0.33787	0.00031996	1.9797	0.0018748	946.984560434979	18.444	0.12421	18.444	18.39	18.515	0	216	76	1.17988115188462	0.0498068956194959	1.17988115188462	476.021872176546	0	20.0945422869274						653	15	4	NaN	NaN	NaN	7.204E-07	1	29417	62.398	57.304	1	170190			17861	1195	15052	15495	17861	17861		
SMNLRPEEDDIPWEDLR	17	Unmodified	_SMNLRPEEDDIPWEDLR_			0	0	1	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.665233	2113.97387	0.088436	6.2406E-05	-0.56831	-0.00040103	-0.47987	-0.00033863	705.999276662259	13.93	0.070942	13.93	13.895	13.966	0	666	22	0.877991458330206	0.0142338480698521	0.877991458330206	530.92907272965	0	8.60733175180735						145	9	4	NaN	NaN	NaN	0.032743	1	33520	30.862	18.179	1	28626			17862	1785	15053	15496	17862	17862		
SMPWNVDTLSK	11	Unmodified	_SMPWNVDTLSK_			0	0	0	Q16543	Q16543	Q16543	CDC37	Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.313363	1276.61217	0.21488	0.00013738	0.70273	0.00044926	0.91761	0.00058664	639.314392334653	11.935	0.1951	11.935	11.855	12.05	0	567	37	0.944945209309785	0.0242945584092671	0.944945209309785	382.571932728523	0	9.83593130463964						555	23	5	NaN	NaN	NaN	0.00109	1	11669	78.932	71.781	1	275850			17863	1888	15054	15497	17863	17863		
SMQDVVEDFK	10	Unmodified	_SMQDVVEDFK_			0	0	0	P08729;CON__Q3KNV1	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.276446	1196.53834	1.2043	0.00072169	0.48191	0.00028879	1.6862	0.0010105	599.277085548772	11.385	0.26607	11.385	11.287	11.553	0	564	46	0.946969335010767	0.0303618936649183	0.946969335010767	383.665897441542	0	12.3011619809664						801	31	5	NaN	NaN	NaN	0.009588	1	9334	50.297	32.901	1	698070		+	17864	39	15055	15498	17864	17864		
SMQNWHQLENLSNFIK	16	Unmodified	_SMQNWHQLENLSNFIK_			0	0	0	Q99439	Q99439	Q99439	CNN2	Calponin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.659753	1987.95743	-0.61229	-0.00040635	-0.98862	-0.0006561	-1.6009	-0.0010625	663.993729067838	15.171	0.15074	15.171	15.127	15.278	1.7764E-15	711	46	0.847456455381371	0.030556215070185	0.847456455381371	512.67605102028	0	18.4852443766672						497	18	5	NaN	NaN	NaN	8.4218E-06	1	31412	70.598	68.888	1	198070			17865	2639	15056	15499	17865	17865		
SMQVVPLDK	9	Unmodified	_SMQVVPLDK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.775885	1015.53722	1.0156	0.00051671	5.5108	0.0028038	6.5264	0.0033205	508.779136053299	7.6688	0.25717	7.6688	7.527	7.7842	0	678	67	0.869855008346864	0.0447815756398717	0.869855008346864	353.138043991074	0	18.1801310293733						453	30	2	NaN	NaN	NaN	0.069102	1	4642	21.088	0	1	203250			17866	2769	15057	15500	17866	17866		
SMSAPVIFDR	10	Unmodified	_SMSAPVIFDR_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.784241	1121.55393	0.58602	0.00032922	-1.6139	-0.00090664	-1.0278	-0.00057743	561.7829589504	10.755	0.1596	10.755	10.676	10.835	0	663	52	0.880024865079826	0.0345535384849188	0.880024865079826	356.814885362163	0	14.0100778541469						411	19	3	NaN	NaN	NaN	0.0011171	1	7303	74.269	68.403	1	104830			17867	278	15058	15501	17867	17867		
SMSTEGLMK	9	Unmodified	_SMSTEGLMK_			0	0	0	O75390	O75390	O75390	CS	Citrate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.230453	982.446353	0.17802	8.7625E-05	0.038853	1.9125E-05	0.21687	0.00010675	492.230894396299	5.8155	0.19507	5.8155	5.7534	5.9485	0	735	58	0.831145085810763	0.0387422086728575	0.831145085810763	337.574772351235	0	15.7353902422058						802	23	4	NaN	NaN	NaN	0.0057195	1	3886	58.426	52.195	1	284740			17868	329	15059	15502	17868	17868		
SMTEAEQQQLIDDHFLFDK	19	Unmodified	_SMTEAEQQQLIDDHFLFDK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1148.03353	2294.05251	0.47977	0.00055079	0.8962	0.0010289	1.376	0.0015797	1148.53572874376	13.983	0.088665	13.983	13.939	14.028	0	66	58	1.27913350869533	0.0376048516734613	1.27913350869533	515.406087138861	0	15.1522646593979						493	11	5	NaN	NaN	NaN	0.05177	1	35589	35.182	33.081	1	127430			17869	668	15060	15503	17869	17869		
SMTEAEQQQLIDDHFLFDK	19	Unmodified	_SMTEAEQQQLIDDHFLFDK_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	765.691447	2294.05251	1.4299	0.0010948	0.26177	0.00020043	1.6916	0.0012953	766.02618201161	13.974	0.1596	13.974	13.93	14.09	0	528	70	0.971237000454584	0.0464840904721099	0.971237000454584	587.014730299965	0	28.0949405952957						1147	19	7	NaN	NaN	NaN	4.2135E-27	1	35590	237.89	221.21	1	769410			17870	668	15060	15503	17870	17870		
SMTEAEQQQLIDDHFLFDK	19	Oxidation (M)	_SM(Oxidation (M))TEAEQQQLIDDHFLFDK_	SM(1)TEAEQQQLIDDHFLFDK	SM(86)TEAEQQQLIDDHFLFDK	0	1	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.023085	2310.04743	1.0416	0.00080312	-0.053005	-4.0868E-05	0.98862	0.00076225	771.357447926023	13.425	0.14189	13.425	13.371	13.513	0	540	34	0.963152256458504	0.0222407417065758	0.963152256458504	582.104069405503	0	13.4417234317638						494	17	5	NaN	NaN	NaN	4.3154E-07	1	35716	85.742	85.142	1	154990			17871	668	15060	15504	17871	17871	203	
SMVAVMDSDTTGK	13	Unmodified	_SMVAVMDSDTTGK_			0	0	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.304878	1340.5952	1.9832	0.0013313	0.77519	0.00052039	2.7584	0.0018517	671.305757233445	7.3408	0.15958	7.3408	7.2964	7.456	0	516	43	0.979317271586824	0.0282770433233913	0.979317271586824	396.285258933831	0	11.4424362363549						528	19	4	NaN	NaN	NaN	0.0022509	1	13600	81.799	72.822	1	342180			17872	515	15061	15505	17872	17872		
SMVEDITGLR	10	Unmodified	_SMVEDITGLR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.786981	1119.55941	0.18066	0.00010131	-0.8934	-0.00050101	-0.71274	-0.0003997	560.786475497198	11.536	0.20402	11.536	11.474	11.678	0	654	43	0.886123392477847	0.0284499302427105	0.886123392477847	359.29536238308	0	11.535558233876						544	24	4	NaN	NaN	NaN	4.9396E-05	1	7250	90.761	43.926	1	184460			17873	718	15062	15506	17873	17873		
SMVEQLDK	8	Unmodified	_SMVEQLDK_			0	0	0	Q9P287	Q9P287	Q9P287	BCCIP	BRCA2 and CDKN1A-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.236593	948.458632	-1.2276	-0.00058339	3.0435	0.0014464	1.8159	0.000863	475.238243587704	5.3366	0.18622	5.3366	5.2745	5.4608	0	774	46	0.804600385996946	0.0306540760963989	0.804600385996946	326.955084331471	0	12.4565016493038						235	22	2	NaN	NaN	NaN	0.014287	1	3214	33.396	9.8203	1	63586			17874	3154	15063	15507	17874	17874		
SMVPVQVQLDVPVVK	15	Unmodified	_SMVPVQVQLDVPVVK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.468383	1636.92221	2.3375	0.0019155	-0.65992	-0.00054078	1.6776	0.0013747	819.4678025926	15.455	0.15094	15.455	15.402	15.553	0	345	58	1.09397730668811	0.0380725831121829	1.09397730668811	441.86428427432	0	15.3777547162003						790	18	5	NaN	NaN	NaN	1.7276E-12	1	22698	165.72	150.75	1	510800			17875	758	15064	15508	17875	17875		
SMVPVQVQLDVPVVK	15	Oxidation (M)	_SM(Oxidation (M))VPVQVQLDVPVVK_	SM(1)VPVQVQLDVPVVK	SM(69)VPVQVQLDVPVVK	0	1	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.465841	1652.91713	3.1191	0.002581	0.24591	0.00020348	3.365	0.0027844	827.466392267734	13.841	0.13301	13.841	13.815	13.948	0	345	55	1.09397730668811	0.036061308536395	1.09397730668811	441.828395205298	0	14.5642052922227						500	16	4	NaN	NaN	NaN	0.00047506	1	23144	69.327	59.076	1	145060			17876	758	15064	15509	17876	17876	257	
SMYEEEINETR	11	Oxidation (M)	_SM(Oxidation (M))YEEEINETR_	SM(1)YEEEINETR	SM(79)YEEEINETR	0	1	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.801014	1415.58747	2.6709	0.0018931	-1.0623	-0.00075298	1.6086	0.0011402	708.799632149052	5.1061	0.12412	5.1061	5.0617	5.1859	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	391.985753119549	0	8.17326982985514						218	15	3	NaN	NaN	NaN	0.00084183	1	15944	79.311	74.771	1	58673			17877	784	15065	15510	17877	17877	261	
SNAAGVPCDLVTGEER	16	Unmodified	_SNAAGVPCDLVTGEER_			0	0	0	Q8IYB8	Q8IYB8	Q8IYB8	SUPV3L1	ATP-dependent RNA helicase SUPV3L1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.891226	1673.7679	2.3646	0.0019813	1.3706	0.0011484	3.7353	0.0031297	837.892214490049	8.7599	0.19527	8.7599	8.6712	8.8665	0	396	88	1.05987478976334	0.0582150376473023	1.05987478976334	428.010960417478	0	23.5090733498105						757	23	3	NaN	NaN	NaN	0.053328	1	23728	29.98	23.233	1	188170			17878	2223	15066	15511	17878	17878		
SNADYQYQLLR	11	Unmodified	_SNADYQYQLLR_			0	0	0	Q9UIV1	Q9UIV1	Q9UIV1	CNOT7	CCR4-NOT transcription complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.838591	1369.66263	0.68386	0.00046902	1.2419	0.00085174	1.9258	0.0013208	685.838805176278	9.3366	0.15079	9.3366	9.2656	9.4164	0	501	31	0.98941132619024	0.0201755538999089	0.98941132619024	400.28315063817	0	8.16236287896805						212	18	3	NaN	NaN	NaN	0.033186	1	14472	37.591	34.246	1	61871			17879	3242	15067	15512	17879	17879		
SNASTLESHETEEPAAK	17	Unmodified	_SNASTLESHETEEPAAK_			0	0	0	Q9UJA5	Q9UJA5	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.946393	1799.81735	0.082742	4.9724E-05	2.9386	0.0017659	3.0213	0.0018157	601.282472454155	3.439	0.03547	3.439	3.4213	3.4567	0	711	16	0.847456455381371	0.0101882329112165	0.847456455381371	513.047067934131	0	6.16791929465842						46	5	2	NaN	NaN	NaN	0.030532	1	27200	30.862	28.878	1	8950.4			17880	3246	15068	15513	17880	17880		
SNDLAVLDASNQISVYK	17	Unmodified	_SNDLAVLDASNQISVYK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.97053	1835.92651	2.4943	0.0022922	-3.4086	-0.0031324	-0.9143	-0.00084022	919.467964441848	13.54	0.10643	13.54	13.513	13.62	0	255	37	1.15396378101328	0.0239484029047847	1.15396378101328	465.668963348374	0	9.66410570072469						197	13	2	NaN	NaN	NaN	1.0289E-06	1	28136	77.431	74.952	1	61187			17881	408	15069	15514	17881	17881		
SNEDQSMGNWQIK	13	Unmodified	_SNEDQSMGNWQIK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.841004	1535.66746	2.322	0.0017853	-0.033477	-2.5739E-05	2.2886	0.0017595	768.84141597994	8.618	0.35511	8.618	8.547	8.9021	0	459	58	1.01763759082241	0.0382674073234339	1.01763759082241	411.257553748902	0	15.4649950690498						1445	41	6	NaN	NaN	NaN	7.5841E-67	1	19590	310.69	300.44	1	1084800			17882	493	15070	15515	17882	17882		
SNEDQSMGNWQIK	13	Oxidation (M)	_SNEDQSM(Oxidation (M))GNWQIK_	SNEDQSM(1)GNWQIK	SNEDQSM(93)GNWQIK	0	1	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.838462	1551.66237	2.1718	0.0016871	-1.4086	-0.0010943	0.76317	0.00059286	776.837349503576	5.9307	0.19514	5.9307	5.8775	6.0727	0	462	37	1.01562323939346	0.024173890872869	1.01562323939346	410.40569681986	0	9.76848711580487						553	23	5	NaN	NaN	NaN	7.2357E-07	1	20104	92.707	85.567	1	153650			17883	493	15070	15516	17883	17883	80	
SNEDVNSSELDEEYLIELEK	20	Unmodified	_SNEDVNSSELDEEYLIELEK_			0	0	0	Q99614	Q99614	Q99614	TTC1	Tetratricopeptide repeat protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1178.03973	2354.06491	0.66907	0.00078819	0.40648	0.00047885	1.0756	0.001267	1178.54157896137	15.012	0.079806	15.012	14.976	15.056	0	66	43	1.27913350869533	0.027703142560725	1.27913350869533	515.32696280341	0	11.1608180216383						249	10	4	NaN	NaN	NaN	0.00097517	1	36084	63.025	61.931	1	47113			17884	2657	15071	15517	17884	17884		
SNEILTAIIQGMR	13	Unmodified	_SNEILTAIIQGMR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.392676	1444.7708	1.3995	0.0010124	-0.30098	-0.00021773	1.0985	0.00079467	723.392707333238	18.381	0.28377	18.381	18.266	18.55	0	450	103	1.02367897599655	0.0684076984303539	1.02367897599655	413.93151072367	0	27.6611150764721						1200	33	3	NaN	NaN	NaN	4.2286E-24	1	16829	215.79	188.85	1	910260			17885	1780	15072	15518	17885	17885		
SNEILTAIIQGMR	13	Oxidation (M)	_SNEILTAIIQGM(Oxidation (M))R_	SNEILTAIIQGM(1)R	SNEILTAIIQGM(66)R	0	1	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.390133	1460.76571	0.86115	0.00062984	0.64679	0.00047305	1.5079	0.0011029	731.389688401609	14.71	0.20397	14.71	14.648	14.852	0	438	103	1.03173026378327	0.0683133563741802	1.03173026378327	417.143772543196	0	27.6200981916717						681	24	2	NaN	NaN	NaN	0.0078316	1	17302	65.879	38.29	1	200310			17886	1780	15072	15519	17886	17886	568	
SNELGDVGVHCVLQGLQTPSCK	22	Unmodified	_SNELGDVGVHCVLQGLQTPSCK_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.054503	2397.14168	0.58976	0.00047184	-0.847	-0.00067765	-0.25724	-0.00020581	800.388174012352	13.141	0.1065	13.141	13.096	13.203	0	555	40	0.953040030838688	0.0263027118748081	0.953040030838688	575.867443140096	0	15.8932205834701						418	13	5	NaN	NaN	NaN	1.2315E-16	1	36327	113.13	108.27	1	106080			17887	678	15073	15520	17887	17887		
SNELWTEIK	9	Unmodified	_SNELWTEIK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.287671	1118.56079	0.82288	0.00046105	-1.3649	-0.00076474	-0.54203	-0.00030369	560.288011043646	10.605	0.30151	10.605	10.48	10.782	0	639	67	0.896281965493857	0.0446884460712992	0.896281965493857	363.418294545995	0	18.1199661294016						959	35	5	NaN	NaN	NaN	0.00093127	1	7224	76.605	40.394	1	331120			17888	1264	15074	15521	17888	17888		
SNESVDIQDQEEK	13	Unmodified	_SNESVDIQDQEEK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.839182	1519.66381	2.4881	0.001893	-1.0648	-0.00081016	1.4233	0.0010829	760.838691871147	4.2549	0.062074	4.2549	4.2371	4.2992	0	477	22	1.0055473068722	0.0141121546928573	1.0055473068722	406.40974699352	0	5.70367717069183						106	8	3	NaN	NaN	NaN	1.5104E-05	1	19116	110.44	95.984	1	18791			17889	2005	15075	15522	17889	17889		
SNEYQLIDCAQYFLDK	16	Unmodified	_SNEYQLIDCAQYFLDK_			0	0	0	P63092;Q5JWF2	P63092	P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.96185	2005.90914	1.081	0.0010853	0.98261	0.00098651	2.0636	0.0020718	1004.46465737932	17.433	0.12415	17.433	17.38	17.504	0	216	58	1.17988115188462	0.0378428307662209	1.17988115188462	475.824949306747	0	15.2613362813696						551	15	4	NaN	NaN	NaN	4.8378E-08	1	31726	141.88	129.71	1	135970			17890	1424	15076	15523	17890	17890		
SNFAEALAAHK	11	Unmodified	_SNFAEALAAHK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	386.86825	1157.58292	-1.2266	-0.00047452	-0.32613	-0.00012617	-1.5527	-0.00060069	386.867998908794	6.6047	0.1862	6.6047	6.5604	6.7466	0	873	28	0.737001551771189	0.0184771819478337	0.737001551771189	448.062960512522	0	11.2332746458656						354	22	4	NaN	NaN	NaN	0.062082	1	8273	22.044	19.884	1	106150			17891	554	15077	15524	17891	17891		
SNFAEALAAHK	11	Unmodified	_SNFAEALAAHK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.798737	1157.58292	1.5057	0.00087301	2.1968	0.0012737	3.7025	0.0021467	579.799945105964	6.5959	0.41675	6.5959	6.5338	6.9505	0	576	49	0.938871150116794	0.0324062107488191	0.938871150116794	380.530795872172	0	13.134455314678						708	48	3	NaN	NaN	NaN	5.7929E-05	1	8278	112.93	92.692	1	915660			17892	554	15077	15524	17892	17892		
SNFGYNIPLK	10	Unmodified	_SNFGYNIPLK_			0	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.806031	1151.59751	1.1011	0.00063514	-0.98172	-0.00056626	0.11941	6.8879E-05	576.805662247071	10.871	0.25719	10.871	10.764	11.021	0	606	58	0.918606045818476	0.0385437520170938	0.918606045818476	372.340008899845	0	15.6229986014201						890	30	4	NaN	NaN	NaN	0.0030579	1	8113	67.507	58.114	1	375110			17893	843	15078	15525	17893	17893		
SNFLNCYVSGFHPSDIEVDLLK	22	Unmodified	_SNFLNCYVSGFHPSDIEVDLLK_			0	0	0	P61769	P61769	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	852.080935	2553.22097	0.67642	0.00057636	-1.0775	-0.00091811	-0.40107	-0.00034174	852.414384895985	18.302	0.12413	18.302	18.248	18.373	0	522	49	0.975277694896658	0.0323210938061441	0.975277694896658	589.096794943931	0	19.5229039584457						681	15	6	NaN	NaN	NaN	1.3679E-08	1	37044	107.84	90.032	1	288710			17894	1351	15079	15526	17894	17894		
SNFLVLCYLHDVK	13	Unmodified	_SNFLVLCYLHDVK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.416151	1606.81775	1.753	0.0014102	0.27621	0.00022219	2.0292	0.0016323	804.416557660937	15.18	0.08867	15.18	15.145	15.234	-1.7764E-15	303	37	1.12200181823275	0.0239978708876349	1.12200181823275	453.254804493519	0	9.69441412721426						173	11	2	NaN	NaN	NaN	0.00014809	1	21825	83.214	78.063	1	80027			17895	1105	15080	15527	17895	17895		
SNFSNSADDIK	11	Unmodified	_SNFSNSADDIK_			0	0	0	P45973	P45973	P45973	CBX5	Chromobox protein homolog 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.272749	1196.53095	2.0438	0.0012248	0.44088	0.00026421	2.4846	0.001489	599.273028988973	4.4765	0.2483	4.4765	4.4056	4.6539	0	594	40	0.926715457081489	0.0263537653577723	0.926715457081489	375.460038231267	0	10.6772641733298						478	29	4	NaN	NaN	NaN	0.040001	1	9332	28.647	21.956	1	159250			17896	1071	15081	15528	17896	17896		
SNILSDNPDFSDEADIIK	18	Unmodified	_SNILSDNPDFSDEADIIK_			0	0	0	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.973467	1991.93238	1.9098	0.001904	0.65087	0.0006489	2.5607	0.0025529	997.475436140721	14.365	0.088648	14.365	14.32	14.409	0	195	58	1.19381749893585	0.0378324369326786	1.19381749893585	481.468446423304	0	15.2578804135649						291	11	2	NaN	NaN	NaN	9.0282E-07	1	31491	91.457	84.25	1	131360			17897	354	15082	15529	17897	17897		
SNILTLMYQCMQDK	14	Unmodified	_SNILTLMYQCMQDK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.906975	1743.7994	1.2886	0.0011248	0.27964	0.0002441	1.5682	0.0013689	872.907661955259	18.178	0.14189	18.178	18.124	18.266	0	240	118	1.16393748060522	0.077923478801557	1.16393748060522	469.879740535678	0	31.4575865207763						754	17	5	NaN	NaN	NaN	6.011E-06	1	25707	128.41	123.02	1	252470			17898	2448	15083	15530	17898	17898		
SNIWVAGDAACFYDIK	16	Unmodified	_SNIWVAGDAACFYDIK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.429987	1828.84542	1.9029	0.001742	7.9147	0.0072453	9.8176	0.0089873	915.93944432826	15.588	0.2128	15.588	15.544	15.757	0	243	94	1.16194328902838	0.0618880385252689	1.16194328902838	468.902575790612	0	24.9749372014475						885	25	4	NaN	NaN	NaN	0.0043381	1	27930	49.967	0	1	297050			17899	458	15084	15531	17899	17899		
SNLAYDIVQLPTGLTGIK	18	Unmodified	_SNLAYDIVQLPTGLTGIK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.022686	1902.04623	0.036201	2.2988E-05	-0.8421	-0.00053475	-0.8059	-0.00051176	635.022069766631	18.311	0.070933	18.311	18.284	18.355	0	624	58	0.906433495720521	0.0385490956418131	0.906433495720521	548.526244599317	0	23.3279007946362						364	9	4	NaN	NaN	NaN	7.7464E-05	1	29653	81.908	71.887	1	102140			17900	955	15085	15532	17900	17900		
SNLAYDIVQLPTGLTGIK	18	Unmodified	_SNLAYDIVQLPTGLTGIK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	952.030391	1902.04623	1.952	0.0018584	-0.58109	-0.00055321	1.371	0.0013052	952.531317700198	18.311	0.16846	18.311	18.275	18.444	0	198	121	1.1918274123006	0.0797294553198915	1.1918274123006	480.823007556513	0	32.1655267382656						1313	20	6	NaN	NaN	NaN	3.2255E-19	1	29656	194.55	142.98	1	822030			17901	955	15085	15532	17901	17901		
SNLGSVVLQLK	11	Unmodified	_SNLGSVVLQLK_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.348063	1156.68157	0.54216	0.0003141	0.10001	5.7943E-05	0.64217	0.00037204	579.348244672302	12.556	0.1862	12.556	12.493	12.68	0	537	37	0.965173861991602	0.0242609491796308	0.965173861991602	391.195060679516	0	9.83321643924808						416	22	3	NaN	NaN	NaN	0.0008605	1	8259	81.099	54.152	1	221660			17902	181	15086	15533	17902	17902		
SNLLWDTGVFR	11	Unmodified	_SNLLWDTGVFR_			0	0	0	Q9UH17;Q96AK3	Q9UH17	Q9UH17	APOBEC3B;APOBEC3D	DNA dC->dU-editing enzyme APOBEC-3B;DNA dC->dU-editing enzyme APOBEC-3D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.340769	1306.66699	0.57178	0.00037414	-4.9506	-0.0032394	-4.3788	-0.0028652	654.337804988795	15.819	0.088675	15.819	15.775	15.863	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	391.483702964479	0	8.18099044324282						111	11	2	NaN	NaN	NaN	0.042586	1	12561	27.589	23.981	1	43299			17903	3208	15087	15534	17903	17903		
SNLMDAISFVLGEK	14	Unmodified	_SNLMDAISFVLGEK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.392341	1522.77013	0.53469	0.00040764	-1.8136	-0.0013827	-1.2789	-0.00097506	762.391075090578	20.102	0.026603	20.102	20.093	20.119	0	447	25	1.02569221487577	0.0161048002118316	1.02569221487577	414.544037741755	0	6.50892032718173						59	4	3	NaN	NaN	NaN	0.029981	1	19203	45.183	41.201	1	23064			17904	1764	15088	15535	17904	17904		
SNLNSLDEQEGVK	13	Unmodified	_SNLNSLDEQEGVK_			0	0	0	O75223	O75223	O75223	GGCT	Gamma-glutamylcyclotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.849352	1431.68415	2.5209	0.0018071	0.069022	4.9478E-05	2.59	0.0018566	716.849490116414	5.7445	0.34593	5.7445	5.6381	5.984	0	483	73	1.00151498427745	0.0484012810998887	1.00151498427745	405.004455128805	0	19.5730815685589						694	40	4	NaN	NaN	NaN	3.4921E-05	1	16439	112.7	89.805	1	352280			17905	314	15089	15536	17905	17905		
SNLVDNTNQVEVLQR	15	Unmodified	_SNLVDNTNQVEVLQR_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.947389	1727.88023	2.8687	0.0024813	-1.7235	-0.0014908	1.1452	0.00099051	864.946147171212	9.5672	0.29262	9.5672	9.4164	9.709	0	345	64	1.09397730668811	0.0420976254605598	1.09397730668811	441.66902516393	0	16.9959807074705						964	34	5	NaN	NaN	NaN	3.4827E-17	1	25267	202.24	164.14	1	515480			17906	3058	15090	15537	17906	17906		
SNMDNMFESYINNLR	15	Unmodified	_SNMDNMFESYINNLR_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.606549	1846.79782	-0.23952	-0.00014769	-0.519	-0.00032002	-0.75852	-0.00046771	616.606510438846	17.619	0.10638	17.619	17.583	17.69	0	642	28	0.894250814548268	0.0182854326605286	0.894250814548268	541.271018676906	0	11.0677838947365						265	13	4	NaN	NaN	NaN	0.0096073	1	28395	70.195	68.485	1	75427		+	17907	28	15091	15538	17907	17907		
SNMDNMFESYINNLR	15	Unmodified	_SNMDNMFESYINNLR_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.406186	1846.79782	1.9842	0.0018342	-0.28932	-0.00026745	1.6949	0.0015668	924.406998654894	17.628	0.29261	17.628	17.468	17.761	0	294	91	1.12800004657306	0.0599947309197233	1.12800004657306	455.171490648759	0	24.2091223194226						1445	34	6	NaN	NaN	NaN	2.0342E-34	1	28397	237.27	233.02	1	908430		+	17908	28	15091	15538	17908	17908		
SNMDNMFESYINNLR	15	Oxidation (M)	_SNMDNM(Oxidation (M))FESYINNLR_	SNMDNM(1)FESYINNLR	SNM(-64)DNM(64)FESYINNLR	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.403643	1862.79273	1.7735	0.0016536	0.94333	0.00087956	2.7168	0.0025331	932.404870392368	15.074	0.16848	15.074	15.03	15.198	0	285	43	1.13399579921816	0.0279744112588804	1.13399579921816	457.561605279788	0	11.2875343376011						700	20	5	NaN	NaN	NaN	1.3305E-11	1	28743	163.09	159.36	2	222980		+	17909	28	15091	15539	17909	17909	12;13	
SNMDNMFESYINNLR	15	Oxidation (M)	_SNM(Oxidation (M))DNMFESYINNLR_	SNM(1)DNMFESYINNLR	SNM(37)DNM(-37)FESYINNLR	0	1	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	932.403643	1862.79273	1.2303	0.0011471	3.934	0.0036681	5.1643	0.0048152	932.908839993528	15.89	0.17733	15.89	15.828	16.005	0	273	43	1.14198628764525	0.0279667154484231	1.14198628764525	460.785717000828	0	11.2844288670328						453	21	5	NaN	NaN	NaN	0.00059201	1	28744	105.08	103.6	2	229020		+	17910	28	15091	15539	17910	17910	12;13	
SNMDNMFESYINNLR	15	2 Oxidation (M)	_SNM(Oxidation (M))DNM(Oxidation (M))FESYINNLR_	SNM(1)DNM(1)FESYINNLR	SNM(54)DNM(54)FESYINNLR	0	2	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.4011	1878.78765	1.725	0.0016222	1.2883	0.0012115	3.0133	0.0028337	940.402594220782	13.682	0.1064	13.682	13.646	13.753	0	273	28	1.14198628764525	0.0179724190816779	1.14198628764525	460.756727404739	0	7.2513243715872						246	13	4	NaN	NaN	NaN	0.0057861	1	29121	54.199	51.72	1	60479		+	17911	28	15091	15540	17911	17911	12;13	
SNMGHPEPASGLAALAK	17	Unmodified	_SNMGHPEPASGLAALAK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.947123	1649.81954	-1.2961	-0.00071408	-0.56653	-0.00031213	-1.8626	-0.0010262	550.946464198681	8.0858	0.10652	8.0858	8.0591	8.1656	0	813	34	0.778007628350577	0.0225203682551777	0.778007628350577	471.329908153564	0	13.6432121157999						233	13	3	NaN	NaN	NaN	0.013663	1	23031	36.46	35.203	1	45697			17912	1127	15092	15541	17912	17912		
SNMGHPEPASGLAALAK	17	Unmodified	_SNMGHPEPASGLAALAK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.917046	1649.81954	3.1679	0.0026164	-1.6203	-0.0013383	1.5476	0.0012782	825.916109325655	8.0858	0.19523	8.0858	7.997	8.1922	0	354	61	1.08796502040166	0.0400957372685233	1.08796502040166	439.407056927802	0	16.1938569514007						748	23	5	NaN	NaN	NaN	0.052077	1	23033	28.432	24.36	1	349990			17913	1127	15092	15541	17913	17913		
SNMGHPEPASGLAALAK	17	Unmodified	_SNMGHPEPASGLAALAK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.947123	1649.81954	0.8623	0.00047508	1.0839	0.0005972	1.9462	0.0010723	551.282314793536	8.077	0.17749	8.077	7.9615	8.139	0	627	88	0.90440375274676	0.0589279560773067	0.90440375274676	547.90276639938	0	35.6995313818188						840	21	4	NaN	NaN	NaN	0.0055023	1	23034	47.915	42.764	1	299130			17914	1127	15092	15541	17914	17914		
SNMGHPEPASGLAALAK	17	Oxidation (M)	_SNM(Oxidation (M))GHPEPASGLAALAK_	SNM(1)GHPEPASGLAALAK	SNM(91)GHPEPASGLAALAK	0	1	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.278761	1665.81445	-1.269	-0.00070593	-0.64397	-0.00035822	-1.913	-0.0010642	556.27842556786	7.1457	0.15073	7.1457	7.0836	7.2343	0	846	22	0.755468431110051	0.0143531208129216	0.755468431110051	457.63873424305	0	8.69466382812521						238	18	3	NaN	NaN	NaN	4.4476E-05	1	23509	91.032	90.293	1	49722			17915	1127	15092	15542	17915	17915	400	
SNNVEMDWVLK	11	Oxidation (M)	_SNNVEM(Oxidation (M))DWVLK_	SNNVEM(1)DWVLK	SNNVEM(61)DWVLK	0	1	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.821552	1349.62855	1.3384	0.00090453	6.3501	0.0042916	7.6886	0.0051961	676.32840393312	10.206	0.23055	10.206	10.081	10.312	0	510	46	0.983355730988811	0.0302905481075687	0.983355730988811	397.892239878216	0	12.2563723928675						509	27	4	NaN	NaN	NaN	0.023823	1	13878	60.547	56.008	1	176090			17916	931	15093	15543	17916	17916	325	
SNPEDQILYQTER	13	Unmodified	_SNPEDQILYQTER_			0	0	0	Q14165	Q14165	Q14165	MLEC	Malectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.881184	1591.74781	2.1509	0.001714	-0.66625	-0.00053092	1.4847	0.0011831	796.880914413497	9.1681	0.32813	9.1681	8.9996	9.3278	0	420	70	1.04379886199097	0.0462470262962584	1.04379886199097	421.697294965314	0	18.6839118143153						1025	38	6	NaN	NaN	NaN	0.00016467	1	21318	76.255	68.254	1	304410			17917	1732	15094	15544	17917	17917		
SNPGGFGIAPHCLDEGTVR	19	Unmodified	_SNPGGFGIAPHCLDEGTVR_			0	0	0	Q7Z7K6	Q7Z7K6	Q7Z7K6	CENPV	Centromere protein V	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.982896	1982.92686	-0.38564	-0.00025529	0.87141	0.00057686	0.48578	0.00032158	662.317993318445	9.4874	0.079804	9.4874	9.4519	9.5317	0	669	49	0.875957769340875	0.0325412920913477	0.875957769340875	529.927470766557	0	19.6864794365823						326	10	4	NaN	NaN	NaN	2.1005E-05	1	31329	53.193	48.595	1	67086			17918	2155	15095	15545	17918	17918		
SNPGGFGIAPHCLDEGTVR	19	Unmodified	_SNPGGFGIAPHCLDEGTVR_			0	0	0	Q7Z7K6	Q7Z7K6	Q7Z7K6	CENPV	Centromere protein V	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.470706	1982.92686	1.5282	0.0015167	-0.60772	-0.00060314	0.9205	0.00091357	992.470306218353	9.4785	0.070935	9.4785	9.4608	9.5317	0	252	22	1.15595906938629	0.0139631798244857	1.15595906938629	466.214738984873	0	5.63154908307234						77	9	2	NaN	NaN	NaN	0.0018121	1	31330	37.886	34.801	1	14855			17919	2155	15095	15545	17919	17919		
SNPGHYLGHLIGHEGPGSLLSELK	24	Unmodified	_SNPGHYLGHLIGHEGPGSLLSELK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.10295	2511.28702	1.4794	0.0012399	0.25781	0.00021607	1.7372	0.001456	838.43741403859	13.664	0.16846	13.664	13.558	13.726	0	471	28	1.00957851518677	0.0181366797500251	1.00957851518677	609.87063044239	0	10.9560852839992						336	20	4	NaN	NaN	NaN	1.9017E-06	1	36884	57.476	53.104	1	75669			17920	702	15096	15546	17920	17920		
SNPSAVAGNETPGASTK	17	Unmodified	_SNPSAVAGNETPGASTK_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.384091	1586.75363	2.3297	0.0018507	-2.6822	-0.0021307	-0.35256	-0.00028007	794.382210040428	3.6164	0.088683	3.6164	3.5721	3.6608	0	459	25	1.01763759082241	0.0161159257109076	1.01763759082241	411.139246017073	0	6.51105030455386						125	11	3	NaN	NaN	NaN	0.00020934	1	21166	49.967	45.439	1	23657			17921	3196	15097	15547	17921	17921		
SNPSEVVEFTTCPDK	15	Unmodified	_SNPSEVVEFTTCPDK_			0	0	0	Q9Y2H6	Q9Y2H6	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.387984	1708.76142	1.8565	0.001588	1.2812	0.0010959	3.1377	0.002684	855.390156990756	9.5228	0.11527	9.5228	9.4608	9.576	0	381	61	1.06991323971056	0.0401123188084369	1.06991323971056	431.992143938542	0	16.1958988423124						418	14	3	NaN	NaN	NaN	6.9468E-12	1	24713	156.02	134.87	1	92978			17922	3342	15098	15548	17922	17922		
SNQQLENDLNLMDIK	15	Unmodified	_SNQQLENDLNLMDIK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.935633	1773.85671	2.5423	0.0022574	0.32264	0.00028648	2.8649	0.0025439	887.93305992642	14.409	0.30147	14.409	14.267	14.568	0	285	70	1.13399579921816	0.0459548181875775	1.13399579921816	457.731143232165	0	18.5494086314331						1266	35	6	NaN	NaN	NaN	1.1855E-17	1	26508	186.39	158.8	1	549970			17923	1095	15099	15549	17923	17923		
SNQQLVDIIEK	11	Unmodified	_SNQQLVDIIEK_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.851167	1285.68778	1.8023	0.0011604	-0.27756	-0.00017871	1.5248	0.00098172	643.851327131849	10.835	0.22169	10.835	10.782	11.004	0	564	52	0.946969335010767	0.034395858934352	0.946969335010767	383.362460622053	0	13.9245069811392						622	26	4	NaN	NaN	NaN	7.3875E-17	1	11937	199.59	138.7	1	460700			17924	1340	15100	15550	17924	17924		
SNTAGSQSQVETEA	14	Unmodified	_SNTAGSQSQVETEA_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.812967	1407.61138	2.0375	0.001436	0.13375	9.427E-05	2.1712	0.0015303	704.812637918979	3.5898	0.13298	3.5898	3.5633	3.6962	0	579	22	0.936845902828289	0.0141767318354546	0.936845902828289	378.914799483837	0	5.73389229173154						138	16	3	NaN	NaN	NaN	0.00010279	1	15683	75.474	68.324	1	28377			17925	1530	15101	15551	17925	17925		
SNTHEFVNLVK	11	Unmodified	_SNTHEFVNLVK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	429.894577	1286.6619	-1.9115	-0.00082174	0.78314	0.00033667	-1.1284	-0.00048508	429.894866260967	6.986	0.14195	6.986	6.9505	7.0925	0	798	25	0.788241307691771	0.0163681894120964	0.788241307691771	478.648838472682	0	9.93936092101421						192	17	2	NaN	NaN	NaN	0.044988	1	11962	25.857	19.593	1	70945			17926	334	15102	15552	17926	17926		
SNTHEFVNLVK	11	Unmodified	_SNTHEFVNLVK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.338227	1286.6619	1.6839	0.001085	0.51739	0.00033337	2.2013	0.0014184	644.338811678879	6.986	0.21289	6.986	6.9151	7.128	0	498	52	0.991429299781895	0.0343008202901166	0.991429299781895	401.357995536836	0	13.8859205391035						477	25	4	NaN	NaN	NaN	5.6813E-06	1	11964	108.4	79.091	1	150150			17927	334	15102	15552	17927	17927		
SNTPILVDGK	10	Unmodified	_SNTPILVDGK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.290214	1042.56587	0.74008	0.00038654	3.448	0.0018009	4.1881	0.0021874	522.292199158904	5.913	0.38135	5.913	5.8421	6.2234	0	720	76	0.841341816837976	0.0509270496849782	0.841341816837976	341.444038289441	0	20.6678631141363						1243	44	3	NaN	NaN	NaN	0.0080273	1	5300	40.386	15.565	1	831900			17928	546	15103	15553	17928	17928		
SNTSPEELGPLANQLTSDYGR	21	Unmodified	_SNTSPEELGPLANQLTSDYGR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1125.03766	2248.06077	1.3918	0.0015658	2.4179	0.0027202	3.8097	0.004286	1125.54039701468	14.187	0.17733	14.187	14.072	14.249	1.7764E-15	123	31	1.24149774378079	0.0198368122798747	1.24149774378079	500.302981562973	0	7.99390605262226						310	21	4	NaN	NaN	NaN	4.4267E-06	1	35169	49.155	48.403	1	47256			17929	3406	15104	15554	17929	17929		
SNYNFEK	7	Unmodified	_SNYNFEK_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.20615	900.397747	0.35413	0.00015979	1.9236	0.00086795	2.2778	0.0010277	451.207039858831	3.6874	0.38124	3.6874	3.581	3.9622	-4.4409E-16	780	52	0.800512323802183	0.034741288932732	0.800512323802183	325.541776887182	0	14.1281284425389						949	44	4	NaN	NaN	NaN	0.050781	1	2327	30.562	26.344	1	607070			17930	1399	15105	15555	17930	17930		
SNYNLPMHK	9	Unmodified	_SNYNLPMHK_			0	0	0	P36578	P36578	P36578	RPL4	60S ribosomal protein L4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.268758	1102.52296	1.3128	0.00072503	2.6388	0.0014573	3.9516	0.0021823	552.7722777266	4.6095	0.24828	4.6095	4.4588	4.7071	0	660	61	0.882057989648486	0.0406709767799367	0.882057989648486	357.714158627282	0	16.4939090287959						584	29	4	NaN	NaN	NaN	0.011181	1	6777	43.734	38.426	1	242580			17931	988	15106	15556	17931	17931		
SPAESCDLLGDIQTCIR	17	Unmodified	_SPAESCDLLGDIQTCIR_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.950957	1933.88736	1.8146	0.0017565	0.21847	0.00021147	2.0331	0.0019679	967.951895462977	14.693	0.1951	14.693	14.586	14.781	0	219	91	1.17788915118882	0.0597231606261268	1.17788915118882	475.143178896936	0	24.0914455872438						905	23	4	NaN	NaN	NaN	7.584E-14	1	30399	130.65	125.27	1	241990			17932	2698	15107	15557	17932	17932		
SPAGLQVLNDYLADK	15	Unmodified	_SPAGLQVLNDYLADK_			0	0	0	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.419945	1602.82534	2.2949	0.0018415	1.2094	0.00097047	3.5043	0.002812	802.421349533313	15.437	0.38142	15.437	15.313	15.695	0	375	97	1.07392668217569	0.0641620688168467	1.07392668217569	433.843135166303	0	25.9200870564673						1484	44	4	NaN	NaN	NaN	1.0093E-24	1	21684	214.78	198.9	1	2133400			17933	829	15108	15558	17933	17933		
SPAGSIVHELNPNFQPPK	18	Unmodified	_SPAGSIVHELNPNFQPPK_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.670647	1930.99011	1.1398	0.00073478	-0.48092	-0.00031004	0.65886	0.00042475	644.67040770885	11.518	0.38142	11.518	11.279	11.66	0	564	82	0.946969335010767	0.0547044532289912	0.946969335010767	572.99427271284	0	33.1006899940883						1228	44	4	NaN	NaN	NaN	0.00055952	1	30339	75.5	66.747	1	353780			17934	229	15109	15559	17934	17934		
SPAGSIVHELNPNFQPPK	18	Unmodified	_SPAGSIVHELNPNFQPPK_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.502332	1930.99011	1.7685	0.0017093	-0.11737	-0.00011344	1.6512	0.0015959	967.003650796676	11.553	0.25724	11.553	11.385	11.642	0	150	49	1.22363604450103	0.0317650260973323	1.22363604450103	493.602081144336	0	12.8136818621106						907	30	4	NaN	NaN	NaN	5.3857E-08	1	30341	78.157	74.869	1	214640			17935	229	15109	15559	17935	17935		
SPAIAAVGPIK	11	Unmodified	_SPAIAAVGPIK_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.313492	1022.61243	0.014148	7.248E-06	-1.3797	-0.00070683	-1.3655	-0.00069959	512.313093240917	8.1745	0.15966	8.1745	8.1213	8.281	0	720	64	0.841341816837976	0.0427846553526837	0.841341816837976	341.53087936704	0	17.3678291909171						437	19	3	NaN	NaN	NaN	5.8451E-05	1	4816	67.507	48.02	1	125250			17936	335	15110	15560	17936	17936		
SPAPPLLHVAALGQK	15	Unmodified	_SPAPPLLHVAALGQK_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.296192	1497.86675	-0.25001	-0.00012508	-0.89249	-0.00044651	-1.1425	-0.00057159	500.295723642306	10.844	0.15076	10.844	10.764	10.915	0	723	67	0.839303037468863	0.0448687594745818	0.839303037468863	508.892472151254	0	27.2051606059235						502	18	3	NaN	NaN	NaN	0.0026253	1	18482	76.85	71.354	1	118190			17937	2237	15111	15561	17937	17937		
SPASDTYIVFGEAK	14	Unmodified	_SPASDTYIVFGEAK_			0	0	0	E9PAV3;Q13765	E9PAV3	E9PAV3	NACA	Nascent polypeptide-associated complex subunit alpha, muscle-specific form;Nascent polypeptide-associated complex subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.867014	1483.71947	2.0229	0.0015028	0.46268	0.00034371	2.4856	0.0018465	742.867485886094	11.314	0.23948	11.314	11.234	11.474	0	450	88	1.02367897599655	0.0583436935193666	1.02367897599655	413.828436587018	0	23.585792069557						1860	28	6	NaN	NaN	NaN	8.551E-17	1	18022	165.09	144.91	1	1428200			17938	46	15112	15562	17938	17938		
SPAVATSTAAPPPPSSPLPSK	21	Unmodified	_SPAVATSTAAPPPPSSPLPSK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.52293	1959.03131	2.3562	0.0023103	-1.1891	-0.001166	1.1671	0.0011444	981.023927113433	8.0148	0.097762	8.0148	7.9793	8.077	0	255	43	1.15396378101328	0.0279282839901285	1.15396378101328	465.449471938925	0	11.2648293206839						288	12	3	NaN	NaN	NaN	1.1973E-08	1	30898	87.251	78.884	1	53617			17939	1729	15113	15563	17939	17939		
SPDELPSAGGDGGK	14	Unmodified	_SPDELPSAGGDGGK_			0	0	0	O60610	O60610	O60610	DIAPH1	Protein diaphanous homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.796588	1285.57862	2.3257	0.0014972	0.09348	6.0182E-05	2.4191	0.0015574	643.796195825349	4.3347	0.16849	4.3347	4.2637	4.4322	0	573	31	0.940896116921038	0.0202482682426971	0.940896116921038	380.904176456023	0	8.19713228797644						280	20	3	NaN	NaN	NaN	0.0016621	1	11915	54.27	47.119	1	49990			17940	270	15114	15564	17940	17940		
SPDGAHLTWEPPSVTSGK	18	Unmodified	_SPDGAHLTWEPPSVTSGK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.639124	1864.89554	-0.1537	-9.5698E-05	-0.11429	-7.1161E-05	-0.26799	-0.00016686	622.639084162468	9.6558	0.12414	9.6558	9.5849	9.709	0	726	55	0.837263974740672	0.0366903942438199	0.837263974740672	506.741468670454	0	22.2063110633298						424	15	3	NaN	NaN	NaN	7.5462E-05	1	28800	67.887	55.869	1	84681			17941	1193	15115	15565	17941	17941		
SPDLLMYQGPPDTAEIIK	18	Unmodified	_SPDLLMYQGPPDTAEIIK_			0	0	0	P82909	P82909	P82909	MRPS36	28S ribosomal protein S36, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.505891	1986.99723	1.7301	0.0017206	0.73169	0.00072767	2.4618	0.0024483	994.507901899834	15.393	0.2218	15.393	15.296	15.517	0	165	67	1.21370334790578	0.0437368810126801	1.21370334790578	489.496853107394	0	17.6394550261235						872	26	4	NaN	NaN	NaN	1.3789E-06	1	31393	84.102	77.246	1	177910			17942	1474	15116	15566	17942	17942		
SPDMLAHFR	9	Unmodified	_SPDMLAHFR_			0	0	0	O43747	O43747	O43747	AP1G1	AP-1 complex subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	358.51141	1072.5124	-1.0856	-0.0003892	-0.72131	-0.0002586	-1.8069	-0.0006478	358.510940655845	7.7931	0.062102	7.7931	7.7664	7.8285	0	873	19	0.737001551771189	0.0123189795795753	0.737001551771189	448.480394301761	0	7.49634896421293						92	8	3	NaN	NaN	NaN	0.041458	1	6012	23.575	17.827	1	20094			17943	225	15117	15567	17943	17943		
SPDTNYLFMGDYVDR	15	Unmodified	_SPDTNYLFMGDYVDR_			0	0	0	P67775;P62714	P67775	P67775	PPP2CA;PPP2CB	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.895977	1791.7774	1.9118	0.0017147	2.3976	0.0021504	4.3094	0.0038651	896.898661259811	14.675	0.1774	14.675	14.613	14.79	1.7764E-15	324	61	1.1079963157843	0.0400184925300473	1.1079963157843	447.201893416761	0	16.1519901972361						819	21	4	NaN	NaN	NaN	1.2108E-11	1	27004	146.37	144.06	1	240200			17944	1439	15118	15568	17944	17944		
SPDVGLYGVIPECGETYHSDLAEAK	25	Unmodified	_SPDVGLYGVIPECGETYHSDLAEAK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	903.090047	2706.24831	1.4876	0.0013435	-0.39558	-0.00035725	1.092	0.00098622	903.424290006708	13.256	0.21287	13.256	13.185	13.398	0	462	100	1.01562323939346	0.066492051938227	1.01562323939346	613.278869831408	0	40.1508835991192						1662	25	6	NaN	NaN	NaN	2.2561E-10	1	37622	51.785	51.088	1	595690			17945	1095	15119	15569	17945	17945		
SPEDHIGAVLER	12	Unmodified	_SPEDHIGAVLER_			0	0	0	Q13823	Q13823	Q13823	GNL2	Nucleolar GTP-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.561486	1321.66263	-1.9579	-0.00086453	-0.37362	-0.00016498	-2.3315	-0.0010295	441.561536852433	7.5092	0.17734	7.5092	7.4294	7.6068	0	855	34	0.749315378969369	0.0225643393094115	0.749315378969369	454.883790957904	0	13.6980402292599						321	21	4	NaN	NaN	NaN	0.027052	1	13032	29.317	24.789	1	77316			17946	1704	15120	15570	17946	17946		
SPEDLER	7	Unmodified	_SPEDLER_			0	0	0	P06744;Q8N196	P06744	P06744	GPI;SIX5	Glucose-6-phosphate isomerase;Homeobox protein SIX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.203607	844.392661	-0.26657	-0.00011281	1.6988	0.00071893	1.4322	0.00060612	423.204159242395	2.8183	0.35466	2.8183	2.7385	3.0932	0	807	49	0.782101955086014	0.0327637483280586	0.782101955086014	318.371548231253	0	13.3371937165353						656	41	3	NaN	NaN	NaN	0.031699	1	1479	49.325	21.621	1	167710			17947	546	15121	15571	17947	17947		
SPEEGAETPVYLALLPPDAEGPHGQFVSEK	30	Unmodified	_SPEEGAETPVYLALLPPDAEGPHGQFVSEK_			0	0	0	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1055.51893	3163.53497	1.6616	0.0017539	-0.38381	-0.00040512	1.2778	0.0013487	1055.85299533522	15.872	0.18621	15.872	15.828	16.014	0	390	112	1.06389100039157	0.0742641638089898	1.06389100039157	641.950210842346	0	44.8108834435719						1433	22	5	NaN	NaN	NaN	0.00022552	1	38426	30.988	30.786	1	290540			17948	724	15122	15572	17948	17948		
SPELQEEFGYNAETQK	16	Unmodified	_SPELQEEFGYNAETQK_			0	0	0	P53365	P53365	P53365	ARFIP2	Arfaptin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.428695	1868.84284	1.5319	0.001433	-0.34769	-0.00032524	1.1842	0.0011078	935.428600961227	9.4608	0.11529	9.4608	9.4253	9.5406	0	291	31	1.12999890578964	0.0199899698231232	1.12999890578964	455.937972088456	0	8.06565940601081						151	14	2	NaN	NaN	NaN	0.0047702	1	28899	33.456	32.493	1	32280			17949	1232	15123	15573	17949	17949		
SPEVLLGSAR	10	Unmodified	_SPEVLLGSAR_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.790381	1027.56621	0.99125	0.00051029	-4.9233	-0.0025345	-3.932	-0.0020242	514.789300577609	7.3319	0.27489	7.3319	7.2343	7.5092	0	693	67	0.85967808974117	0.0447691415527759	0.85967808974117	348.951904967177	0	18.1722407666454						1026	32	4	NaN	NaN	NaN	3.7376E-07	1	4929	142.04	92.985	1	394440			17950	540	15124	15574	17950	17950		
SPEYFEPILNYLR	13	Unmodified	_SPEYFEPILNYLR_			0	0	0	Q7L273	Q7L273	Q7L273	KCTD9	BTB/POZ domain-containing protein KCTD9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.919581	1639.82461	0.71861	0.00058992	-3.431	-0.0028166	-2.7124	-0.0022266	821.418313346568	18.71	0.070927	18.71	18.665	18.736	0	399	61	1.0578662689527	0.0401399775748084	1.0578662689527	427.272473163128	0	16.2125478375261						227	9	2	NaN	NaN	NaN	0.00046743	1	22756	35.33	32.85	1	51579			17951	2113	15125	15575	17951	17951		
SPEYLSLFIDDK	12	Unmodified	_SPEYLSLFIDDK_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.858657	1425.70276	0.78853	0.0005629	1.4692	0.0010488	2.2578	0.0016117	713.860079479775	16.209	0.13298	16.209	16.174	16.307	0	447	31	1.02569221487577	0.020133781351245	1.02569221487577	414.798174693309	0	8.1422629840103						222	16	3	NaN	NaN	NaN	0.0042589	1	16252	38.1	33.572	1	47078			17952	1695	15126	15576	17952	17952		
SPFEVQVGPEAGMQK	15	Unmodified	_SPFEVQVGPEAGMQK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.392873	1602.77119	2.251	0.0018062	-4.3947	-0.0035263	-2.1437	-0.0017201	802.39280831655	10.543	0.20397	10.543	10.454	10.658	0	381	64	1.06991323971056	0.0421382628414091	1.06991323971056	432.221937149119	0	17.0229518781725						861	24	5	NaN	NaN	NaN	0.00015887	1	21672	91.245	77.446	1	237060			17953	326	15127	15577	17953	17953		
SPFEVQVGPEAGMQK	15	Oxidation (M)	_SPFEVQVGPEAGM(Oxidation (M))QK_	SPFEVQVGPEAGM(1)QK	SPFEVQVGPEAGM(56)QK	0	1	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.39033	1618.76611	2.0391	0.0016524	-1.862	-0.0015089	0.17707	0.0001435	810.390108904411	9.2479	0.19512	9.2479	9.1326	9.3278	0	390	34	1.06389100039157	0.0220845924039434	1.06389100039157	429.752686571047	0	8.92094482792703						378	23	5	NaN	NaN	NaN	0.017372	1	22145	55.578	37.847	1	84768			17954	326	15127	15578	17954	17954	52	
SPGADLLQVLTK	12	Unmodified	_SPGADLLQVLTK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.358628	1240.7027	0.94084	0.0005846	-1.5538	-0.00096549	-0.61301	-0.0003809	621.357626784317	15.801	0.22171	15.801	15.704	15.925	0	573	40	0.940896116921038	0.0263209282177764	0.940896116921038	381.050597534435	0	10.6596310099198						592	26	4	NaN	NaN	NaN	1.7158E-05	1	10653	131.54	118.37	1	260770			17955	1932	15128	15579	17955	17955		
SPGAPGPLTLK	11	Unmodified	_SPGAPGPLTLK_			0	0	0	Q15942	Q15942	Q15942	ZYX	Zyxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.303124	1036.5917	0.15104	7.8436E-05	-0.71697	-0.00037232	-0.56593	-0.00029389	519.302765789796	7.5181	0.15072	7.5181	7.4649	7.6156	0	708	46	0.849494101904619	0.0305604601468165	0.849494101904619	344.778416267254	0	12.4033669288512						313	18	3	NaN	NaN	NaN	0.0026705	1	5162	83.358	76.207	1	96359			17956	1876	15129	15580	17956	17956		
SPGLYFLTAGDQGTLR	16	Unmodified	_SPGLYFLTAGDQGTLR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.438669	1694.86278	1.9176	0.0016269	1.0963	0.00093011	3.0138	0.002557	848.440517311912	14.959	0.24832	14.959	14.799	15.047	0	342	64	1.09598084995137	0.0420512546798575	1.09598084995137	442.546495908779	0	16.9798910336475						895	25	4	NaN	NaN	NaN	0.00020858	1	24347	87.573	63.737	1	380540			17957	1594	15130	15581	17957	17957		
SPGVVISDDEPGYDLDLFCIPNHYAEDLER	30	Unmodified	_SPGVVISDDEPGYDLDLFCIPNHYAEDLER_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1145.86103	3434.56127	1.3877	0.0015901	-2.2271	-0.002552	-0.83938	-0.00096181	1146.52690628819	18.701	0.070927	18.701	18.665	18.736	0	351	94	1.08996939197032	0.062041516248821	1.08996939197032	657.458485440078	0	37.4228135283881						646	9	5	NaN	NaN	NaN	0.018545	1	38624	22.796	22.73	1	100400			17958	481	15131	15582	17958	17958		
SPIAEAVFR	9	Unmodified	_SPIAEAVFR_			0	0	0	P24666	P24666	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.274367	988.53418	-0.59361	-0.000294	-1.2552	-0.00062167	-1.8488	-0.00091568	495.273880510932	9.5406	0.32805	9.5406	9.443	9.7711	0	744	76	0.82502364452135	0.0509836920700807	0.82502364452135	335.060025103065	0	20.7055849347917						1056	38	4	NaN	NaN	NaN	2.3143E-06	1	4023	137.88	104.07	1	565110			17959	831	15132	15583	17959	17959		
SPIAPEELALVHNLR	15	Unmodified	_SPIAPEELALVHNLR_			0	0	0	P51398	P51398	P51398	DAP3	28S ribosomal protein S29, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.645661	1657.91515	1.2469	0.00069035	-1.8555	-0.0010273	-0.60861	-0.00033696	553.644552621426	12.893	0.16849	12.893	12.83	12.999	0	654	40	0.886123392477847	0.0264196242559493	0.886123392477847	536.806430096993	0	16.0047960608315						443	20	5	NaN	NaN	NaN	0.00015157	1	23269	90.306	89.787	1	205970			17960	1183	15133	15584	17960	17960		
SPIAPEELALVHNLR	15	Unmodified	_SPIAPEELALVHNLR_			0	0	0	P51398	P51398	P51398	DAP3	28S ribosomal protein S29, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.964854	1657.91515	3.3143	0.0027507	-1.5251	-0.0012658	1.7891	0.0014849	829.963932777036	12.893	0.10643	12.893	12.848	12.955	0	231	37	1.16991841121525	0.0239220824983335	1.16991841121525	472.487157659983	0	9.66125214937364						328	13	4	NaN	NaN	NaN	3.9177E-08	1	23270	119.55	115.81	1	81800			17961	1183	15133	15584	17961	17961		
SPIIFIGTGEHIDDFEPFK	19	Unmodified	_SPIIFIGTGEHIDDFEPFK_			0	0	0	P61011	P61011	P61011	SRP54	Signal recognition particle 54 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	721.365	2161.07317	0.089482	6.4549E-05	-0.80364	-0.00057972	-0.71416	-0.00051517	721.698458639619	17.158	0.079781	17.158	17.131	17.211	0	558	55	0.951016745717027	0.0364166254573408	0.951016745717027	575.006364715818	0	22.018320406814						265	10	3	NaN	NaN	NaN	3.742E-05	1	34190	54.912	54.699	1	49400			17962	1321	15134	15585	17962	17962		
SPILLGSLAHQIYR	14	Unmodified	_SPILLGSLAHQIYR_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.303347	1566.88821	-0.028468	-1.4897E-05	-0.77718	-0.0004067	-0.80565	-0.0004216	523.302857206819	13.584	0.088676	13.584	13.558	13.646	0	699	40	0.85560534332665	0.0264746954397943	0.85560534332665	518.568013029371	0	16.0458677787037						183	11	3	NaN	NaN	NaN	0.022442	1	20568	42.061	36.91	1	38689			17963	928	15135	15586	17963	17963		
SPILLGSLAHQIYR	14	Unmodified	_SPILLGSLAHQIYR_			0	0	0	P31937	P31937	P31937	HIBADH	3-hydroxyisobutyrate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.451382	1566.88821	2.3324	0.0018297	0.25475	0.00019984	2.5872	0.0020295	784.451646693676	13.593	0.15074	13.593	13.531	13.682	0	300	34	1.12400150285141	0.0219965339302892	1.12400150285141	454.161493555997	0	8.88786952463346						460	18	5	NaN	NaN	NaN	1.0013E-16	1	20569	141.44	126.3	1	243580			17964	928	15135	15586	17964	17964		
SPILVATAVAAR	12	Unmodified	_SPILVATAVAAR_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.856055	1167.69756	1.4101	0.00082469	1.0074	0.00058917	2.4174	0.0014139	584.856757846722	10.161	0.1685	10.161	10.09	10.259	0	516	40	0.979317271586824	0.026255437790293	0.979317271586824	396.883404687189	0	10.6404204685165						354	20	3	NaN	NaN	NaN	0.00035366	1	8556	81.099	59.824	1	118590			17965	93	15136	15587	17965	17965		
SPISVPGGSALISNLGK	17	Unmodified	_SPISVPGGSALISNLGK_			0	0	0	P51610	P51610	P51610	HCFC1	Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.951412	1595.88827	2.0826	0.0016639	0.54913	0.00043873	2.6318	0.0021026	798.951831051963	14.365	0.15071	14.365	14.32	14.471	0	348	58	1.09197348738011	0.0380725831121829	1.09197348738011	441.150084025909	0	15.3810723732126						490	18	4	NaN	NaN	NaN	0.0020561	1	21460	39.166	27.147	1	142260			17966	1193	15137	15588	17966	17966		
SPITGNDLSPPVSFNLMFK	19	Unmodified	_SPITGNDLSPPVSFNLMFK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.52716	2063.03976	1.6623	0.0017163	-1.4677	-0.0015155	0.19454	0.00020087	1033.02776187463	18.355	0.17733	18.355	18.248	18.426	0	183	85	1.20177511391933	0.0556651409443047	1.20177511391933	484.562146931819	0	22.4444822436598						1098	21	4	NaN	NaN	NaN	0.00023129	1	32756	51.829	41.071	1	257580			17967	1035	15138	15589	17967	17967		
SPLAGDFITMQCR	13	Unmodified	_SPLAGDFITMQCR_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.355236	1494.69592	1.1411	0.00085393	-2.238	-0.0016748	-1.0969	-0.0008209	748.35435672175	12.502	0.19507	12.502	12.44	12.635	0	453	85	1.02166545906632	0.0563590660873043	1.02166545906632	412.986442786332	0	22.7819488420669						850	23	4	NaN	NaN	NaN	0.0042432	1	18370	64.266	49.81	1	241750			17968	470	15139	15590	17968	17968		
SPLFGQYFVLENPGTIK	17	Unmodified	_SPLFGQYFVLENPGTIK_			0	0	0	Q5VT66	Q5VT66	Q5VT66	MARC1	Mitochondrial amidoxime-reducing component 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.506551	1908.99855	1.8428	0.0017608	-0.8404	-0.000803	1.0024	0.00095779	956.007750927125	17.761	0.23939	17.761	17.619	17.858	0	228	94	1.17191150690002	0.0617266512874046	1.17191150690002	472.775797085149	0	24.901937212815						1137	28	5	NaN	NaN	NaN	0.01673	1	29824	47.27	42.964	1	380100			17969	2008	15140	15591	17969	17969		
SPLIESTANMDNNQSQK	17	Unmodified	_SPLIESTANMDNNQSQK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.938904	1875.86326	2.4888	0.0023368	-1.6931	-0.0015897	0.79572	0.00074713	938.937953271537	6.6402	0.097552	6.6402	6.6136	6.7111	0	294	49	1.12800004657306	0.0319883593147245	1.12800004657306	455.118915213767	0	12.9064776504355						389	12	4	NaN	NaN	NaN	1.6776E-06	1	29050	105.08	103.24	1	77636			17970	131	15141	15592	17970	17970		
SPLIIFSDCDMNNAVK	16	Unmodified	_SPLIIFSDCDMNNAVK_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.436954	1822.85936	1.1551	0.0010539	2.7612	0.0025194	3.9163	0.0035733	912.439383399449	14.772	0.15961	14.772	14.719	14.879	0	270	148	1.14398322290989	0.0976485472942665	1.14398322290989	461.666213965563	0	39.407077154428						1156	19	5	NaN	NaN	NaN	2.8856E-06	1	27794	123.99	120.49	1	388430			17971	1123	15142	15593	17971	17971		
SPLLAGGSPPQPVVPAHK	18	Unmodified	_SPLLAGGSPPQPVVPAHK_			0	0	0	Q8NFH5	Q8NFH5	Q8NFH5	NUP35	Nucleoporin NUP53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.493778	1750.973	1.945	0.0017048	-1.5037	-0.0013179	0.44139	0.00038688	876.492685846574	8.4938	0.044347	8.4938	8.4672	8.5116	0	237	19	1.16593139812432	0.0119626835627247	1.16593139812432	470.669478838898	0	4.82916065820012						39	6	2	NaN	NaN	NaN	0.018011	1	25934	47.57	44.066	1	5805.8			17972	2319	15143	15594	17972	17972		
SPLLQLPHIEEDNLR	15	Unmodified	_SPLLQLPHIEEDNLR_			0	0	0	Q9UGP8	Q9UGP8	Q9UGP8	SEC63	Translocation protein SEC63 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.478325	1772.9421	1.8951	0.0016818	-4.7251	-0.0041934	-2.83	-0.0025116	887.472022855731	13.691	0.20395	13.691	13.567	13.77	0	204	49	1.18784641916898	0.0318567027040773	1.18784641916898	479.469585839062	0	12.8588341095543						499	24	4	NaN	NaN	NaN	0.0023058	1	26493	68.108	66.837	1	133790			17973	3205	15144	15595	17973	17973		
SPLLQLPHIEEDNLR	15	Unmodified	_SPLLQLPHIEEDNLR_			0	0	0	Q9UGP8	Q9UGP8	Q9UGP8	SEC63	Translocation protein SEC63 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.987976	1772.9421	0.44431	0.00026303	-1.6511	-0.00097742	-1.2068	-0.00071439	592.321252302335	13.691	0.19507	13.691	13.558	13.753	0	606	79	0.918606045818476	0.0527550707333684	0.918606045818476	556.185170951385	0	31.9414270872205						478	23	3	NaN	NaN	NaN	0.0009373	1	26494	63.908	59.08	1	130170			17974	3205	15144	15595	17974	17974		
SPLPVAFEYVGWGPAK	16	Unmodified	_SPLPVAFEYVGWGPAK_			0	0	0	P52569	P52569	P52569	SLC7A2	Cationic amino acid transporter 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.451048	1716.88754	1.3746	0.0011814	-1.0963	-0.0009422	0.27827	0.00023916	859.449966546669	17.309	0.28376	17.309	17.167	17.45	0	300	55	1.12400150285141	0.0360116819912435	1.12400150285141	453.813747467046	0	14.5396570338911						469	33	2	NaN	NaN	NaN	0.0041953	1	24972	34.472	29.378	1	120990			17975	1215	15145	15596	17975	17975		
SPLSWIEEK	9	Unmodified	_SPLSWIEEK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.784764	1087.55498	0.20876	0.00011373	0.2155	0.0001174	0.42426	0.00023113	544.784810221427	12.582	0.24828	12.582	12.467	12.715	0	639	64	0.896281965493857	0.0426778685344582	0.896281965493857	363.54438049215	0	17.3107346509377						795	29	4	NaN	NaN	NaN	0.00012873	1	6402	79.059	44.278	1	265710			17976	1228	15146	15597	17976	17976		
SPLTLEDFK	9	Unmodified	_SPLTLEDFK_			0	0	0	Q16512	Q16512	Q16512	PKN1	Serine/threonine-protein kinase N1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.279315	1048.54408	0.38718	0.00020338	2.7872	0.0014641	3.1744	0.0016675	525.28069307957	11.261	0.15076	11.261	11.19	11.341	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	361.24043885702	0	9.06922602138627						271	18	3	NaN	NaN	NaN	0.036727	1	5437	39.01	23.131	1	60225			17977	1882	15147	15598	17977	17977		
SPLVAAMQHFLPVLK	15	Unmodified	_SPLVAAMQHFLPVLK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.984849	1649.93272	-0.33303	-0.0001835	-0.6513	-0.00035886	-0.98434	-0.00054236	550.984555910695	18.506	0.29265	18.506	18.311	18.603	0	633	121	0.900343422309015	0.0813646550431577	0.900343422309015	545.442647670336	0	49.2920276572994						1834	34	4	NaN	NaN	NaN	2.8142E-05	1	23055	85.821	78.264	1	516320			17978	429	15148	15599	17978	17978		
SPLVAAMQHFLPVLK	15	Unmodified	_SPLVAAMQHFLPVLK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.973636	1649.93272	1.7182	0.0014192	-0.2833	-0.000234	1.4349	0.0011852	825.973447957271	18.497	0.28378	18.497	18.337	18.621	0	240	49	1.16393748060522	0.0319180411076747	1.16393748060522	470.090522525706	0	12.8910434386062						1003	33	4	NaN	NaN	NaN	3.4329E-08	1	23057	88.734	78.484	1	273410			17979	429	15148	15599	17979	17979		
SPLVMDVLNIQGVQR	15	Unmodified	_SPLVMDVLNIQGVQR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.958714	1667.90288	1.2942	0.0010806	-0.35922	-0.00029993	0.93499	0.00078068	834.957936936933	16.635	0.15962	16.635	16.546	16.706	0	393	46	1.0618830335572	0.030107052507665	1.0618830335572	428.834340105899	0	12.1585312003788						350	19	3	NaN	NaN	NaN	1.3216E-08	1	23584	86.838	79.698	1	61825			17980	1737	15149	15600	17980	17980		
SPNELVDDLFK	11	Unmodified	_SPNELVDDLFK_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.824618	1275.63468	0.93937	0.00060009	1.0204	0.00065187	1.9598	0.001252	638.824625560864	15.606	0.19507	15.606	15.508	15.704	0	567	103	0.944945209309785	0.0687489530176811	0.944945209309785	382.575068982457	0	27.8340322635452						905	23	3	NaN	NaN	NaN	2.7194E-05	1	11649	126.29	81.473	1	214210			17981	3309	15150	15601	17981	17981		
SPNLWLK	7	Unmodified	_SPNLWLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.247621	856.480688	-1.6111	-0.00069155	-1.4749	-0.00063308	-3.0859	-0.0013246	429.247044566519	9.1681	0.21285	9.1681	9.0972	9.31	0	801	40	0.78619514174348	0.0266038664488725	0.78619514174348	319.965593696119	0	10.8272380112254						464	25	3	NaN	NaN	NaN	0.04646	1	1655	40.203	20.716	1	175630			17982	1465	15151	15602	17982	17982		
SPNTEEIFNMLTK	13	Unmodified	_SPNTEEIFNMLTK_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.374149	1522.73374	0.98447	0.00075054	0.24045	0.00018332	1.2249	0.00093385	762.374583644874	16.227	0.13299	16.227	16.165	16.298	0	429	40	1.03776581230406	0.0261540485744427	1.03776581230406	419.4237885935	0	10.570429291553						331	16	3	NaN	NaN	NaN	0.00010229	1	19200	89.382	84.855	1	76134			17983	2107	15152	15603	17983	17983		
SPPGQVTEAVK	11	Unmodified	_SPPGQVTEAVK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.800946	1111.58734	1.9475	0.0010844	0.42143	0.00023465	2.3689	0.001319	556.80135613915	4.1041	0.28377	4.1041	3.9977	4.2815	0	630	97	0.902373728295776	0.0649833887331899	0.902373728295776	365.916272625732	0	26.3510324405675						1116	33	3	NaN	NaN	NaN	0.01229	1	7037	54.584	43.882	1	353010			17984	708	15153	15604	17984	17984		
SPPLHEHPLYK	11	Unmodified	_SPPLHEHPLYK_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.903183	1316.68772	-1.6109	-0.00070866	1.4028	0.00061712	-0.20809	-9.1541E-05	439.904288425617	3.4834	0.10657	3.4834	3.4479	3.5544	0	804	22	0.78414869089473	0.0143271514943355	0.78414869089473	476.048477845154	0	8.69786398923026						149	13	3	NaN	NaN	NaN	0.065994	1	12883	8.9771	8.4739	1	36227			17985	2807	15154	15605	17985	17985		
SPPPELTDTATSTK	14	Unmodified	_SPPPELTDTATSTK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.861928	1443.7093	2.038	0.0014732	0.69779	0.0005044	2.7358	0.0019776	722.861419612263	5.3898	0.16844	5.3898	5.3278	5.4962	0	414	25	1.04781950764076	0.0160825837476568	1.04781950764076	423.695848294003	0	6.50314669085071						236	20	3	NaN	NaN	NaN	0.0051946	1	16775	54.199	49.671	1	48588			17986	1074	15155	15606	17986	17986		
SPPYIFSPIPFLGHAIAFGK	20	Unmodified	_SPPYIFSPIPFLGHAIAFGK_			0	0	0	Q16850	Q16850	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.394454	2158.16153	0.78646	0.00056656	-0.63555	-0.00045785	0.15091	0.00010871	720.728216919939	19.836	0.035453	19.836	19.827	19.862	0	483	28	1.00151498427745	0.01814921540488	1.00151498427745	605.543960846552	0	10.9735230676125						49	5	2	NaN	NaN	NaN	0.02055	1	34152	45.654	43.107	1	11628			17987	1911	15156	15607	17987	17987		
SPPYTAFLGNLPYDVTEESIK	21	Unmodified	_SPPYTAFLGNLPYDVTEESIK_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1171.08355	2340.15254	0.82821	0.0009699	-0.68677	-0.00080426	0.14144	0.00016564	1171.58446976614	18.683	0.38136	18.683	18.435	18.816	0	66	55	1.27913350869533	0.0356280865496466	1.27913350869533	515.344949496081	0	14.3540563504563						1430	44	5	NaN	NaN	NaN	1.4236E-05	1	35967	69.369	65.415	1	294140			17988	824	15157	15608	17988	17988		
SPPYTAFLGNLPYDVTEESIK	21	Unmodified	_SPPYTAFLGNLPYDVTEESIK_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	781.058124	2340.15254	-0.080585	-6.2941E-05	0.21534	0.0001682	0.13476	0.00010526	781.392755965618	18.71	0.16845	18.71	18.585	18.754	0	558	28	0.951016745717027	0.0182171330553085	0.951016745717027	574.725498708913	0	11.0091130649492						138	20	2	NaN	NaN	NaN	0.023319	1	35968	10.252	9.9966	1	32438			17989	824	15157	15608	17989	17989		
SPQSDPADTPTNTK	14	Unmodified	_SPQSDPADTPTNTK_			0	0	0	P46013	P46013	P46013	MKI67	Antigen KI-67	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.838985	1457.66342	1.5047	0.0010982	-0.67779	-0.00049468	0.82693	0.00060353	729.838846868385	2.57	0.05325	2.57	2.5345	2.5878	0	516	16	0.979317271586824	0.0100982435652083	0.979317271586824	395.960337670611	0	4.08295048802825						41	7	2	NaN	NaN	NaN	0.043302	1	17174	26.517	23.172	1	6788.8			17990	1074	15158	15609	17990	17990		
SPSAQLMEQVAQLK	14	Unmodified	_SPSAQLMEQVAQLK_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.40324	1528.79193	1.6365	0.0012526	0.38813	0.00029707	2.0246	0.0015496	765.402438102505	13.327	0.17738	13.327	13.256	13.434	0	378	55	1.07192009927972	0.0361110377354152	1.07192009927972	433.212130460224	0	14.5941284252442						462	21	3	NaN	NaN	NaN	2.8559E-07	1	19393	136.06	116.74	1	113790			17991	1736	15159	15610	17991	17991		
SPSDSSTASTPVAEQIER	18	Unmodified	_SPSDSSTASTPVAEQIER_			0	0	0	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.442334	1860.87011	2.5293	0.0023559	-2.4615	-0.0022928	0.067791	6.3144E-05	931.440227344025	6.7289	0.16843	6.7289	6.658	6.8264	0	294	58	1.12800004657306	0.0379887953176345	1.12800004657306	455.145836693293	0	15.3284054219187						659	20	4	NaN	NaN	NaN	5.4409E-05	1	28707	67.887	62.793	1	154340			17992	1897	15160	15611	17992	17992		
SPSELFAQHIVTIVHHVK	18	Unmodified	_SPSELFAQHIVTIVHHVK_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.377575	2041.11089	0.95717	0.00065219	0.072244	4.9226E-05	1.0294	0.00070142	681.711980615773	12.352	0.2217	12.352	12.219	12.44	0	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	582.562094373187	0	12.2285171134981						585	26	4	NaN	NaN	NaN	2.7687E-05	1	32375	91.032	83.825	1	188890			17993	3355	15161	15612	17993	17993		
SPSIGFMNK	9	Unmodified	_SPSIGFMNK_			0	0	0	P62256	P62256	P62256	UBE2H	Ubiquitin-conjugating enzyme E2 H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.747127	979.479702	0.045715	2.2435E-05	0.48794	0.00023945	0.53365	0.00026189	490.748537794177	7.8463	0.14188	7.8463	7.7842	7.9261	0	726	46	0.837263974740672	0.0305944526295086	0.837263974740672	340.074214481019	0	12.4266476993465						396	17	3	NaN	NaN	NaN	0.067562	1	3825	26.456	8.0537	1	139470			17994	1374	15162	15613	17994	17994		
SPSLLQSGAK	10	Unmodified	_SPSLLQSGAK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.277106	986.53966	0.10134	5.0088E-05	-1.5619	-0.00077201	-1.4606	-0.00072192	494.276414357508	4.8489	0.15073	4.8489	4.8135	4.9642	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	335.069322676572	0	7.45939550979864						211	18	2	NaN	NaN	NaN	0.00498	1	3986	55.235	41.587	1	64903			17995	2698	15163	15614	17995	17995		
SPTDWALFTYEGNSNDIR	18	Unmodified	_SPTDWALFTYEGNSNDIR_			0	0	0	Q9UJU6	Q9UJU6	Q9UJU6	DBNL	Drebrin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.47925	2084.94395	2.0069	0.0020941	-1.5256	-0.001592	0.48124	0.00050217	1043.9782299683	15.562	0.15961	15.562	15.508	15.668	0	195	43	1.19381749893585	0.0278631320749874	1.19381749893585	481.319784178142	0	11.2337746169866						495	19	4	NaN	NaN	NaN	1.5664E-07	1	33096	83.474	74.318	1	111920			17996	3249	15164	15615	17996	17996		
SPTEQEEPDPANLEVDHDFFQDK	23	Unmodified	_SPTEQEEPDPANLEVDHDFFQDK_			0	0	0	Q96CU9	Q96CU9	Q96CU9	FOXRED1	FAD-dependent oxidoreductase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	896.396305	2686.16708	2.0641	0.0018503	0.25817	0.00023142	2.3223	0.0020817	896.730446201029	12.848	0.079835	12.848	12.822	12.901	0	483	40	1.00151498427745	0.0262082910405103	1.00151498427745	604.782778356411	0	15.8263464054795						211	10	3	NaN	NaN	NaN	0.053806	1	37565	3.2279	2.9943	1	39261			17997	2498	15165	15616	17997	17997		
SPTLYGISHDDLK	13	Unmodified	_SPTLYGISHDDLK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.580546	1444.71981	-0.20531	-9.9076E-05	-0.27162	-0.00013108	-0.47692	-0.00023015	482.580328627969	8.3785	0.19516	8.3785	8.3253	8.5205	0	732	43	0.833184998970724	0.0285607760310633	0.833184998970724	505.352805548276	0	17.3230054714907						469	22	4	NaN	NaN	NaN	0.061896	1	16815	19.557	16.454	1	166320			17998	350	15166	15617	17998	17998		
SPTLYGISHDDLK	13	Unmodified	_SPTLYGISHDDLK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.367181	1444.71981	2.2341	0.0016161	1.4429	0.0010437	3.677	0.0026598	723.367725240122	8.3697	0.14193	8.3697	8.3253	8.4672	0	390	67	1.06389100039157	0.0441600684452672	1.06389100039157	430.191651365486	0	17.856427737325						524	17	4	NaN	NaN	NaN	1.1486E-07	1	16817	124.46	108.58	1	238730			17999	350	15166	15617	17999	17999		
SPVDVLQIFR	10	Unmodified	_SPVDVLQIFR_			0	0	0	Q9UKK3	Q9UKK3	Q9UKK3	PARP4	Poly [ADP-ribose] polymerase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.334956	1172.65536	-0.65647	-0.00038557	-1.1708	-0.00068762	-1.8272	-0.0010732	587.334792146242	17.326	0.14188	17.326	17.273	17.415	0	633	37	0.900343422309015	0.0243619867259138	0.900343422309015	364.860035578329	0	9.87258319806432						327	17	3	NaN	NaN	NaN	5.6984E-05	1	8682	88.921	69.665	1	77517			18000	3263	15167	15618	18000	18000		
SPVESTTEPPAVR	13	Unmodified	_SPVESTTEPPAVR_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.351531	1368.68851	2.406	0.001649	-1.3888	-0.00095179	1.0173	0.00069718	685.350674049444	5.1149	0.18619	5.1149	5.0706	5.2568	0	537	58	0.965173861991602	0.0384158376205809	0.965173861991602	390.480260210283	0	15.5418902863025						478	22	3	NaN	NaN	NaN	2.4165E-07	1	14456	126.29	103.24	1	133750			18001	1247	15168	15619	18001	18001		
SPVFSSSDGSLWETVAR	17	Unmodified	_SPVFSSSDGSLWETVAR_			0	0	0	Q6PJG6	Q6PJG6	Q6PJG6	BRAT1	BRCA1-associated ATM activator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.941773	1823.86899	1.4951	0.0013649	3.1325	0.0028598	4.6276	0.0042247	913.445798859226	14.675	0.14188	14.675	14.586	14.728	0	276	37	1.13998907770044	0.0239681717267723	1.13998907770044	460.05241119389	0	9.67256214160716						265	17	4	NaN	NaN	NaN	0.0016152	1	27825	66.485	58.111	1	65437			18002	2077	15169	15620	18002	18002		
SPVPVETLK	9	Unmodified	_SPVPVETLK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.2844	968.554247	-0.33299	-0.00016159	3.1765	0.0015415	2.8435	0.0013799	485.286270936733	6.5427	0.23944	6.5427	6.4451	6.6845	0	741	58	0.827064408645228	0.0387745352190065	0.827064408645228	335.983874425448	0	15.7516372796983						406	28	2	NaN	NaN	NaN	0.012358	1	3605	40.502	27.675	1	132000			18003	1927	15170	15621	18003	18003		
SPVTTLLECMHK	12	Unmodified	_SPVTTLLECMHK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.354705	1414.69486	1.4284	0.0010118	-1.0534	-0.00074617	0.37498	0.00026562	708.854062527885	12.316	0.2217	12.316	12.227	12.449	0	447	52	1.02569221487577	0.034215621891726	1.02569221487577	414.829194617539	0	13.8381072477985						454	26	3	NaN	NaN	NaN	0.061364	1	15921	32.051	29.172	1	131180			18004	1273	15171	15622	18004	18004		
SPVVTIMGHVDHGK	14	Unmodified	_SPVVTIMGHVDHGK_			0	0	0	P46199	P46199	P46199	MTIF2	Translation initiation factor IF-2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.925771	1475.75548	-1.3275	-0.00065436	-0.024217	-1.1937E-05	-1.3517	-0.0006663	492.925801870065	6.6402	0.14188	6.6402	6.5604	6.7023	-8.8818E-16	804	22	0.78414869089473	0.0143251567743449	0.78414869089473	475.515998221888	0	8.68692545474403						207	17	3	NaN	NaN	NaN	0.0030537	1	17769	32.759	32.398	1	43444			18005	1080	15172	15623	18005	18005		
SPVYLTVLK	9	Unmodified	_SPVYLTVLK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.310418	1018.60628	0.0018354	9.3661E-07	-0.51915	-0.00026493	-0.51732	-0.00026399	510.31014341521	11.545	0.23949	11.545	11.483	11.722	0	663	43	0.880024865079826	0.0284657258071274	0.880024865079826	357.252372506267	0	11.5558644797913						571	28	4	NaN	NaN	NaN	0.01291	1	4719	39.01	30.827	1	288450			18006	1277	15173	15624	18006	18006		
SPYLYPLYGLGELPQGFAR	19	Unmodified	_SPYLYPLYGLGELPQGFAR_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.373719	2140.09933	0.23397	0.00016714	-0.52336	-0.00037388	-0.2894	-0.00020674	714.70778655744	19.117	0.070947	19.117	19.091	19.162	0	468	61	1.01159370163332	0.0403343924406536	1.01159370163332	611.670815266943	0	24.3886163660735						309	9	3	NaN	NaN	NaN	0.0060451	1	33887	56.938	56.873	1	79604			18007	1161;920	15174	15625	18007	18007		
SPYLYPLYGLGELPQGFAR	19	Unmodified	_SPYLYPLYGLGELPQGFAR_			0	0	0	P31150;P50395	P31150;P50395	P50395	GDI1;GDI2	Rab GDP dissociation inhibitor alpha;Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.05694	2140.09933	0.73129	0.00078325	0.94597	0.0010132	1.6773	0.0017964	1071.55959184927	19.117	0.16844	19.117	19.064	19.233	0	120	88	1.2434810169581	0.0575307487530137	1.2434810169581	501.257468824376	0	23.1911200140808						1300	20	6	NaN	NaN	NaN	2.4853E-14	1	33888	110.14	103.93	1	743070			18008	1161;920	15174	15625	18008	18008		
SPYNYLQVAYFK	12	Unmodified	_SPYNYLQVAYFK_			0	0	0	Q32P28	Q32P28	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.877185	1491.73982	1.5039	0.0011232	-0.81831	-0.00061118	0.68561	0.00051207	746.878108177383	14.533	0.2128	14.533	14.391	14.604	0	399	58	1.0578662689527	0.0381829759272949	1.0578662689527	427.627615394357	0	15.4349329623813						568	25	4	NaN	NaN	NaN	0.00068247	1	18294	62.271	54.27	1	127670			18009	1928	15175	15626	18009	18009		
SPYQEFTDHLVK	12	Unmodified	_SPYQEFTDHLVK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.577025	1462.70924	-0.62248	-0.00030413	-0.055218	-2.6978E-05	-0.6777	-0.00033111	488.577053765943	10.277	0.39014	10.277	10.09	10.48	0	768	160	0.808687310729125	0.108175905590231	0.808687310729125	490.437048618071	0	65.6044322266245						3573	45	5	NaN	NaN	NaN	0.00034559	1	17346	90.306	66.185	1	3047400			18010	717	15176	15627	18010	18010		
SPYQEFTDHLVK	12	Unmodified	_SPYQEFTDHLVK_			0	0	0	P15880	P15880	P15880	RPS2	40S ribosomal protein S2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.361899	1462.70924	1.5231	0.0011154	-0.79278	-0.0005806	0.73028	0.00053483	732.361318222015	10.259	0.34579	10.259	10.117	10.463	0	459	64	1.01763759082241	0.0422838777135148	1.01763759082241	411.440773003707	0	17.0957829083172						1061	40	4	NaN	NaN	NaN	0.006807	1	17348	40.533	22.197	1	581020			18011	717	15176	15627	18011	18011		
SPYTLDSLYWSVK	13	Unmodified	_SPYTLDSLYWSVK_			0	0	0	Q9Y4W2	Q9Y4W2	Q9Y4W2	LAS1L	Ribosomal biogenesis protein LAS1L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.893032	1557.77151	1.3352	0.0010413	2.0961	0.0016347	3.4313	0.002676	779.894377346722	15.411	0.10653	15.411	15.358	15.464	0	378	37	1.07192009927972	0.0240806587960416	1.07192009927972	433.139796397722	0	9.73047492536909						299	13	4	NaN	NaN	NaN	1.8413E-07	1	20290	108.2	87.107	1	76602			18012	3415	15177	15628	18012	18012		
SQACEPSEPEIEIK	14	Unmodified	_SQACEPSEPEIEIK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.877253	1615.73995	2.8097	0.0022727	-0.95024	-0.00076863	1.8595	0.0015041	808.876254079841	8.0059	0.2484	8.0059	7.9083	8.1567	0	399	61	1.0578662689527	0.0401732058727873	1.0578662689527	427.325817872664	0	16.2279945584724						744	29	4	NaN	NaN	NaN	1.3157E-05	1	22061	113.34	103.09	1	201710			18013	849	15178	15629	18013	18013		
SQACGGNLGSIEELR	15	Unmodified	_SQACGGNLGSIEELR_			0	0	0	Q9Y6E0	Q9Y6E0	Q9Y6E0	STK24	Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.880661	1589.74677	1.3806	0.0010988	1.6709	0.0013299	3.0515	0.0024286	795.88263936416	9.443	0.15073	9.443	9.4076	9.5583	0	414	25	1.04781950764076	0.0160848033247041	1.04781950764076	423.326233225071	0	6.49837033378418						272	18	4	NaN	NaN	NaN	8.5587E-07	1	21264	89.359	87.058	1	69034			18014	3462	15179	15630	18014	18014		
SQAEEEIDEIRK	12	Unmodified	_SQAEEEIDEIRK_			0	0	1	Q5T1M5	Q5T1M5	Q5T1M5	FKBP15	FK506-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.857177	1445.6998	1.9492	0.001411	-6.2088	-0.0044943	-4.2596	-0.0030833	723.853046179881	5.8066	0.19506	5.8066	5.7357	5.9307	0	468	22	1.01159370163332	0.0141063059336848	1.01159370163332	409.042278386552	0	5.70394567444987						222	23	3	NaN	NaN	NaN	0.036568	1	16852	54.27	39.295	1	58207			18015	1988	15180	15631	18015	18015		
SQAFIEMETR	10	Unmodified	_SQAFIEMETR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.289888	1210.56522	1.2561	0.00076154	0.76803	0.00046565	2.0241	0.0012272	606.290400790182	8.3785	0.23059	8.3785	8.3164	8.547	0	579	43	0.936845902828289	0.0283554323651288	0.936845902828289	379.514231158322	0	11.4867237832026						539	27	3	NaN	NaN	NaN	2.89E-07	1	9741	107.08	87.755	1	205260			18016	1062	15181	15632	18016	18016		
SQALIEELLLYK	12	Unmodified	_SQALIEELLLYK_			0	0	0	Q5VT52	Q5VT52	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.408317	1418.80208	0.33008	0.00023449	-4.2602	-0.0030265	-3.9302	-0.002792	710.404690931259	18.178	0.079812	18.178	18.151	18.231	0	468	43	1.01159370163332	0.0281989788945491	1.01159370163332	409.11576247266	0	11.4044272248501						177	10	3	NaN	NaN	NaN	0.014735	1	16074	51.531	39.512	1	34598			18017	2007	15182	15633	18017	18017		
SQAPLESSLDSLGDVFLDSGR	21	Unmodified	_SQAPLESSLDSLGDVFLDSGR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1097.03713	2192.05971	0.55655	0.00061055	8.2957	0.0091007	8.8522	0.0097112	1097.54689442089	19.419	0.13303	19.419	19.375	19.508	0	105	52	1.25339330680955	0.0336971780106132	1.25339330680955	505.175936454054	0	13.581533717219						441	16	4	NaN	NaN	NaN	0.0018474	1	34592	43.767	42.398	1	92371			18018	1782	15183	15634	18018	18018		
SQDAEVGDGTTSVTLLAAEFLK	22	Unmodified	_SQDAEVGDGTTSVTLLAAEFLK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.56826	2251.12197	0.85048	0.00095812	0.14025	0.000158	0.99072	0.0011161	1127.06987152474	19.649	0.15961	19.649	19.614	19.774	0	69	106	1.27715511956461	0.0693576099946456	1.27715511956461	514.668019943482	0	27.9497323834284						1077	19	6	NaN	NaN	NaN	1.1152E-29	1	35191	176.01	168.36	1	355440			18019	2679	15184	15635	18019	18019		
SQDATFSPGSEQAEK	15	Unmodified	_SQDATFSPGSEQAEK_			0	0	0	Q86WB0	Q86WB0	Q86WB0	ZC3HC1	Nuclear-interacting partner of ALK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.354999	1580.69544	2.6668	0.0021104	0.17652	0.00013969	2.8433	0.0022501	791.355519435912	4.3879	0.14188	4.3879	4.3347	4.4765	0	453	31	1.02166545906632	0.0201393435247932	1.02166545906632	412.780236086545	0	8.13683471533761						232	17	3	NaN	NaN	NaN	0.0028537	1	20983	63.766	57.738	1	49153			18020	2179	15185	15636	18020	18020		
SQDDAMVDYFFQR	13	Unmodified	_SQDDAMVDYFFQR_			0	0	0	Q14671	Q14671	Q14671	PUM1	Pumilio homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.351205	1620.68786	1.3554	0.0010997	0.44775	0.00036328	1.8031	0.001463	811.351685444764	15.996	0.1064	15.996	15.952	16.058	0	393	37	1.0618830335572	0.0241005916389636	1.0618830335572	428.937255968937	0	9.73519805680945						277	13	3	NaN	NaN	NaN	0.0029265	1	22200	66.953	57.692	1	69837			18021	1762	15186	15637	18021	18021		
SQDLESVQEVGGSYWQR	17	Unmodified	_SQDLESVQEVGGSYWQR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.458318	1966.90208	1.5679	0.0015436	-0.41698	-0.0004105	1.151	0.0011331	984.958896050539	11.651	0.19509	11.651	11.607	11.802	0	261	58	1.14997238118939	0.0379104952093297	1.14997238118939	463.826487318621	0	15.2907079448867						540	23	5	NaN	NaN	NaN	1.1551E-14	1	31040	139.61	124.64	1	121130			18022	2900	15187	15638	18022	18022		
SQDTVLMNLYK	11	Unmodified	_SQDTVLMNLYK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.334295	1310.65404	0.40295	0.00026447	4.0119	0.0026332	4.4149	0.0028976	656.336842720222	11.882	0.14192	11.882	11.793	11.935	0	516	43	0.979317271586824	0.028273132407321	0.979317271586824	396.377606468541	0	11.4435197623168						337	17	3	NaN	NaN	NaN	0.022088	1	12678	48.785	41.646	1	103940			18023	1923	15188	15639	18023	18023		
SQDVELWEGEVVK	13	Unmodified	_SQDVELWEGEVVK_			0	0	0	Q9UHB6	Q9UHB6	Q9UHB6	LIMA1	LIM domain and actin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.377746	1516.74094	1.2043	0.00091455	1.0946	0.00083124	2.299	0.0017458	759.379257214975	12.059	0.31038	12.059	11.855	12.165	0	420	106	1.04379886199097	0.0704051150022709	1.04379886199097	421.877120143493	0	28.4559681391821						918	36	2	NaN	NaN	NaN	0.00023261	1	19030	63.766	52.284	1	421200			18024	3211	15189	15640	18024	18024		
SQEADVQDWEFR	12	Unmodified	_SQEADVQDWEFR_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.333869	1508.65319	1.2463	0.0009414	1.1311	0.00085432	2.3774	0.0017957	755.334981942316	10.649	0.079777	10.649	10.613	10.693	0	474	28	1.00756305028564	0.0181391858417761	1.00756305028564	407.251263090885	0	7.3317559068978						137	10	3	NaN	NaN	NaN	0.00030777	1	18744	59.731	50.469	1	24823			18025	2819	15190	15641	18025	18025		
SQEATEAAPSCVGDMADTPR	20	Unmodified	_SQEATEAAPSCVGDMADTPR_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.94914	2091.88373	2.5435	0.002663	-0.93981	-0.00098393	1.6037	0.001679	1046.94853631581	7.6068	0.088684	7.6068	7.5713	7.66	0	165	112	1.21370334790578	0.0736030038005464	1.21370334790578	489.326558887382	0	29.6743884208946						883	11	4	NaN	NaN	NaN	1.0431E-15	1	33211	137.68	132.06	1	221180			18026	3215	15191	15642	18026	18026		
SQEATEAAPSCVGDMADTPR	20	Oxidation (M)	_SQEATEAAPSCVGDM(Oxidation (M))ADTPR_	SQEATEAAPSCVGDM(1)ADTPR	SQEATEAAPSCVGDM(88)ADTPR	0	1	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.9466	2107.87865	2.4162	0.002549	-0.83703	-0.00088302	1.5792	0.0016659	1055.44678739418	5.381	0.035449	5.381	5.3632	5.3987	0	216	19	1.17988115188462	0.0119544677589298	1.17988115188462	475.666720792363	0	4.81941970903193						49	5	2	NaN	NaN	NaN	2.8846E-07	1	33431	88.421	86.32	1	8978.2			18027	3215	15191	15643	18027	18027	640	
SQECYFDPELYR	12	Unmodified	_SQECYFDPELYR_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.845755	1605.67696	0.6067	0.0004877	2.2695	0.0018243	2.8762	0.002312	803.847245070656	11.97	0.097539	11.97	11.926	12.024	0	390	31	1.06389100039157	0.0200810554330217	1.06389100039157	429.78239367159	0	8.11218824887095						220	12	4	NaN	NaN	NaN	0.00066715	1	21763	58.476	48.226	1	45598			18028	639	15192	15644	18028	18028		
SQEMVHLVNK	10	Unmodified	_SQEMVHLVNK_			0	0	0	P16070	P16070	P16070	CD44	CD44 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	395.541257	1183.60194	-0.86416	-0.00034181	-1.2656	-0.0005006	-2.1298	-0.00084241	395.540927254445	4.7071	0.10642	4.7071	4.6716	4.778	0	897	25	0.720567078607086	0.0164459420824562	0.720567078607086	437.958356517442	0	9.99579078707956						194	13	3	NaN	NaN	NaN	0.051469	1	8973	23.053	0	1	66252			18029	721	15193	15645	18029	18029		
SQENILQGFSTSHK	14	Unmodified	_SQENILQGFSTSHK_			0	0	0	Q86V48	Q86V48	Q86V48	LUZP1	Leucine zipper protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.930238	1574.76888	-0.81187	-0.00042698	0.080406	4.2288E-05	-0.73146	-0.0003847	525.930559727569	8.6534	0.12425	8.6534	8.5825	8.7068	0	753	25	0.81889964927511	0.0163340619501384	0.81889964927511	496.299574956858	0	9.89936680318357						183	15	3	NaN	NaN	NaN	0.00012267	1	20820	77.157	65.139	1	42141			18030	2171	15194	15646	18030	18030		
SQEQEVLER	9	Unmodified	_SQEQEVLER_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.277835	1116.54112	1.9764	0.0011054	1.176	0.00065771	3.1524	0.0017631	559.780655258094	4.0243	0.1951	4.0243	3.9445	4.1396	0	654	67	0.886123392477847	0.0446822477654109	0.886123392477847	359.307165816365	0	18.1178512419147						557	23	3	NaN	NaN	NaN	0.019985	1	7171	57.032	25.08	1	126140			18031	3269	15195	15647	18031	18031		
SQEQLAAELAEYTAK	15	Unmodified	_SQEQLAAELAEYTAK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.277303	1650.81008	-1.2251	-0.00067536	0.30651	0.00016897	-0.91858	-0.00050639	551.277883221835	13.026	0.10633	13.026	12.99	13.096	0	714	25	0.845418525735192	0.0163045710776146	0.845418525735192	512.165986422274	0	9.87752985646569						175	13	4	NaN	NaN	NaN	6.7475E-05	1	23072	135.5	125.25	1	42378			18032	710	15196	15648	18032	18032		
SQEQLAAELAEYTAK	15	Unmodified	_SQEQLAAELAEYTAK_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.412317	1650.81008	2.5938	0.0021435	-0.09921	-8.1989E-05	2.4946	0.0020616	826.412624055558	13.034	0.21283	13.034	12.963	13.176	0	339	133	1.09798411722691	0.0880772179082701	1.09798411722691	443.45134582169	0	35.5724278747292						1435	25	6	NaN	NaN	NaN	9.5324E-18	1	23074	196.42	191.61	1	900930			18033	710	15196	15648	18033	18033		
SQESGYYDR	9	Unmodified	_SQESGYYDR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.73326	1103.45197	1.5285	0.00084486	1.2424	0.00068672	2.7709	0.0015316	552.733653233241	2.7385	0.28378	2.7385	2.703	2.9868	0	681	31	0.867820189810857	0.0203524260142245	0.867820189810857	351.936439155697	0	8.25373784076987						433	33	3	NaN	NaN	NaN	0.0013312	1	6798	69.716	60.953	1	134780			18034	1062	15197	15649	18034	18034		
SQETECTYFSTPLLLGK	17	Unmodified	_SQETECTYFSTPLLLGK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.479873	1972.94519	2.4848	0.0024537	0.32296	0.00031892	2.8078	0.0027726	987.981384096716	15.464	0.28387	15.464	15.34	15.624	0	210	88	1.18386433251387	0.057760142809697	1.18386433251387	477.486116828089	0	23.2963064602803						2141	33	7	NaN	NaN	NaN	6.1395E-57	1	31166	253.15	233.59	1	1966900			18035	1023	15198	15650	18035	18035		
SQFEELCAELLQK	13	Unmodified	_SQFEELCAELLQK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.892706	1593.77086	1.5163	0.0012099	-0.062427	-4.981E-05	1.4539	0.0011601	797.892496287509	14.959	0.23056	14.959	14.834	15.065	0	378	49	1.07192009927972	0.0321075493337244	1.07192009927972	433.053599802456	0	12.9713864206365						922	27	4	NaN	NaN	NaN	1.2636E-07	1	21396	163.93	48.999	1	479800			18036	2415	15199	15651	18036	18036		
SQGCSEQVLTVLK	13	Unmodified	_SQGCSEQVLTVLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.874316	1447.73408	1.8492	0.0013404	-0.12292	-8.9101E-05	1.7262	0.0012513	724.874535378908	9.9396	0.32803	9.9396	9.7977	10.126	0	450	64	1.02367897599655	0.0422663641098704	1.02367897599655	413.923474469648	0	17.0903581061879						950	38	5	NaN	NaN	NaN	8.3214E-17	1	16921	157.74	145.14	1	374950			18037	1465	15200	15652	18037	18037		
SQGDSNPAAIPHAAEDIQGDDR	22	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SQGDSNPAAIPHAAEDIQGDDR_			1	0	0	P68402	P68402	P68402	PAFAH1B2	Platelet-activating factor acetylhydrolase IB subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1153.51762	2305.0207	1.6027	0.0018488	-1.3727	-0.0015834	0.23	0.00026531	1154.01772857405	9.177	0.088747	9.177	9.1415	9.2303	0	129	82	1.23753038177212	0.0535924865857382	1.23753038177212	498.628501505959	0	21.5936042232422						483	11	3	NaN	NaN	NaN	0.00047431	1	35673	58.539	57.596	1	80887			18038	1451	15201	15653	18038	18038		
SQGFPDTYR	9	Unmodified	_SQGFPDTYR_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.748713	1069.48287	0.76245	0.00040848	1.817	0.00097345	2.5794	0.0013819	535.7494764089	5.78	0.24829	5.78	5.6913	5.9396	0	684	31	0.86578508874114	0.0203552522347787	0.86578508874114	351.248642724197	0	8.25811718491303						411	29	3	NaN	NaN	NaN	0.034151	1	5942	21.088	18.929	1	108800			18039	849	15202	15654	18039	18039		
SQGMALSLGDK	11	Unmodified	_SQGMALSLGDK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.779156	1105.54376	1.6074	0.00089013	4.9051	0.0027164	6.5125	0.0036065	554.283821090263	7.7044	0.23066	7.7044	7.6156	7.8463	8.8818E-16	651	61	0.888155670855968	0.0406371291236521	0.888155670855968	360.174882605415	0	16.4796259167342						501	27	4	NaN	NaN	NaN	0.0047828	1	6864	36.514	20.932	1	155320			18040	1240	15203	15655	18040	18040		
SQGQDVTSSVYFMK	14	Unmodified	_SQGQDVTSSVYFMK_			0	0	0	P15374	P15374	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.869231	1575.72391	2.0063	0.0015827	0.91481	0.00072166	2.9211	0.0023044	788.870869500821	10.321	0.15958	10.321	10.268	10.427	0	396	40	1.05987478976334	0.0261107757546724	1.05987478976334	428.229560858196	0	10.5497424253169						376	19	5	NaN	NaN	NaN	7.0498E-05	1	20844	93.162	86.415	1	130670			18041	712	15204	15656	18041	18041		
SQICDNAALYAQK	13	Unmodified	_SQICDNAALYAQK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.35629	1480.69803	2.0848	0.0015456	-0.70675	-0.00052395	1.378	0.0010216	741.356082847651	6.5338	0.29261	6.5338	6.454	6.7466	0	468	64	1.01159370163332	0.0423072461230747	1.01159370163332	408.950606328062	0	17.1032835872413						1251	34	5	NaN	NaN	NaN	2.962E-17	1	17918	212.93	191.84	1	1008300			18042	1264	15205	15657	18042	18042		
SQIDVALSQDSTYQGER	17	Unmodified	_SQIDVALSQDSTYQGER_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.950326	1895.8861	2.413	0.0022899	-1.1162	-0.0010592	1.2969	0.0012307	949.451262546077	9.0174	0.15073	9.0174	8.9908	9.1415	0	291	34	1.12999890578964	0.0219844292788041	1.12999890578964	455.890050450118	0	8.86946219299864						319	18	4	NaN	NaN	NaN	4.9929E-07	1	29515	112.68	109.79	1	58066			18043	2442	15206	15658	18043	18043		
SQIFSTASDNQPTVTIK	17	Unmodified	_SQIFSTASDNQPTVTIK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.97053	1835.92651	3.1112	0.0028591	-1.6205	-0.0014892	1.4906	0.0013699	918.969562078354	10.161	0.37241	10.161	10.019	10.392	0	273	133	1.14198628764525	0.0879439561358755	1.14198628764525	460.83557589766	0	35.4887831062858						2609	43	6	NaN	NaN	NaN	1.3126E-45	1	28137	260.78	237.82	1	2439700			18044	638	15207	15659	18044	18044		
SQIFSTASDNQPTVTIK	17	Unmodified	_SQIFSTASDNQPTVTIK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.982779	1835.92651	0.96127	0.00058924	0.98115	0.00060143	1.9424	0.0011907	612.983428786609	10.161	0.22169	10.161	10.099	10.321	0	645	64	0.892219381832517	0.0426837906416542	0.892219381832517	540.065242253535	0	25.8367305200632						1062	26	5	NaN	NaN	NaN	2.0836E-10	1	28138	176.58	151.89	1	800010			18045	638	15207	15659	18045	18045		
SQIHDIVLVGGSTR	14	Unmodified	_SQIHDIVLVGGSTR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.607207	1480.79979	-0.48035	-0.00023758	0.050809	2.513E-05	-0.42954	-0.00021245	494.60719618108	7.9704	0.15975	7.9704	7.9261	8.0858	0	756	43	0.816857749704129	0.0285885886986983	0.816857749704129	495.335460614078	0	17.3358724410772						302	19	4	NaN	NaN	NaN	0.00014238	1	17939	88.24	88.24	1	128710			18046	640	15208	15660	18046	18046		
SQIHDIVLVGGSTR	14	Unmodified	_SQIHDIVLVGGSTR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.407172	1480.79979	2.662	0.0019737	1.3326	0.000988	3.9946	0.0029617	741.40839659941	7.9704	0.47907	7.9704	7.9083	8.3874	8.8818E-16	420	112	1.04379886199097	0.0743153908850482	1.04379886199097	421.969706937578	0	30.0429947326257						2077	55	6	NaN	NaN	NaN	2.7191E-17	1	17941	226.85	180.82	1	3021700			18047	640	15208	15660	18047	18047		
SQIVMLEASAENILQQDFCHAIK	23	Unmodified	_SQIVMLEASAENILQQDFCHAIK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	882.440246	2644.29891	0.95725	0.00084472	1.3594	0.0011996	2.3167	0.0020443	882.775742005309	19.649	0.053204	19.649	19.632	19.685	0	474	22	1.00756305028564	0.0141102047023627	1.00756305028564	608.484608627405	0	8.52139464973004						83	7	4	NaN	NaN	NaN	0.070751	1	37414	3.3965	2.5854	1	15234			18048	2345	15209	15661	18048	18048		
SQLDIIIHSLK	11	Unmodified	_SQLDIIIHSLK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.874445	1265.73434	1.4239	0.00090255	0.69361	0.00043966	2.1175	0.0013422	633.875162947091	13.682	0.22164	13.682	13.62	13.841	0	474	49	1.00756305028564	0.0322541328760771	1.00756305028564	407.961004331059	0	13.0596575948488						650	26	5	NaN	NaN	NaN	5.8472E-17	1	11394	195.8	150.98	1	522850			18049	674	15210	15662	18049	18049		
SQLEGLEESVR	11	Unmodified	_SQLEGLEESVR_			0	0	0	O15031	O15031	O15031	PLXNB2	Plexin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.817324	1245.62009	1.2891	0.00080415	6.8903	0.0042983	8.1794	0.0051024	623.821710634414	8.485	0.16847	8.485	8.4229	8.5914	0	567	52	0.944945209309785	0.0344292157937285	0.944945209309785	382.673765422797	0	13.942774161439						335	20	3	NaN	NaN	NaN	0.06576	1	10788	21.15	10.448	1	77871			18050	139	15211	15663	18050	18050		
SQLLGSAHEVQR	12	Unmodified	_SQLLGSAHEVQR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.852032	1323.68951	2.2493	0.001491	-1.2014	-0.00079632	1.048	0.00069467	662.85136494052	4.1662	0.11528	4.1662	4.1307	4.246	0	459	31	1.01763759082241	0.02014212547595	1.01763759082241	411.845421896631	0	8.15166640791392						179	14	3	NaN	NaN	NaN	0.00054665	1	13098	79.889	67.293	1	45143			18051	1703	15212	15664	18051	18051		
SQLLSYIDR	9	Unmodified	_SQLLSYIDR_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.795663	1093.57677	1.0175	0.00055738	0.017851	9.7789E-06	1.0353	0.00056716	547.795728222717	10.995	0.19511	10.995	10.933	11.128	0	612	37	0.914549654013882	0.0243417287857135	0.914549654013882	370.928454341881	0	9.87266223858524						472	23	4	NaN	NaN	NaN	0.025199	1	6547	44.82	0	1	198940			18052	952	15213	15665	18052	18052		
SQLNDISSFK	10	Unmodified	_SQLNDISSFK_			0	0	0	Q9BTE7	Q9BTE7	Q9BTE7	DCUN1D5	DCN1-like protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.790578	1137.5666	1.2742	0.00072603	0.17362	9.893E-05	1.4478	0.00082496	569.791219380435	8.2366	0.21294	8.2366	8.1833	8.3963	0	612	34	0.914549654013882	0.0223086119453004	0.914549654013882	370.74991840618	0	9.04370366570583						261	25	3	NaN	NaN	NaN	0.00072042	1	7736	63.397	42.122	1	73733			18053	2736	15214	15666	18053	18053		
SQLQDTLIHLIK	12	Unmodified	_SQLQDTLIHLIK_			0	0	0	Q9NPI6	Q9NPI6	Q9NPI6	DCP1A	mRNA-decapping enzyme 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.276798	1407.80856	-2.2964	-0.0010799	0.46081	0.00021671	-1.8356	-0.00086324	470.276915430063	14.746	0.10643	14.746	14.701	14.808	0	768	28	0.808687310729125	0.0183873254729269	0.808687310729125	490.615969293599	0	11.1552578974973						179	13	3	NaN	NaN	NaN	0.071095	1	15709	19.324	15.716	1	51587			18054	2990	15215	15667	18054	18054		
SQMDGLIPGVEPR	13	Unmodified	_SQMDGLIPGVEPR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.855926	1397.6973	0.50658	0.00035453	1.2068	0.00084461	1.7134	0.0011991	700.359119147491	12.006	0.27491	12.006	11.899	12.174	0	483	106	1.00151498427745	0.0706780300836765	1.00151498427745	405.098673306624	0	28.5882654461525						756	32	2	NaN	NaN	NaN	0.00078539	1	15375	70.195	64.699	1	289700			18055	3357	15216	15668	18055	18055		
SQMLAMNIEK	10	Unmodified	_SQMLAMNIEK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.791209	1163.56787	0.88024	0.00051299	0.83984	0.00048945	1.7201	0.0010024	582.791319393009	8.9021	0.14205	8.9021	8.8487	8.9908	0	585	46	0.932794566565362	0.0303955552959029	0.932794566565362	378.045025621201	0	12.3187772447268						264	17	2	NaN	NaN	NaN	0.034267	1	8434	40.533	29.173	1	71455			18056	1304	15217	15669	18056	18056		
SQMSGVEAAASDPSEK	16	Unmodified	_SQMSGVEAAASDPSEK_			0	0	0	Q5T1M5	Q5T1M5	Q5T1M5	FKBP15	FK506-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.356684	1592.69882	1.8494	0.0014747	-2.2169	-0.0017677	-0.36747	-0.000293	797.354265801552	5.3278	0.088657	5.3278	5.2835	5.3721	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	418.445098613893	0	8.12731938063854						176	11	3	NaN	NaN	NaN	0.00017357	1	21344	80.379	72.822	1	40953			18057	1988	15218	15670	18057	18057		
SQNEAVCEGLR	11	Unmodified	_SQNEAVCEGLR_			0	0	0	O43663	O43663	O43663	PRC1	Protein regulator of cytokinesis 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.793326	1261.5721	1.8491	0.0011682	-2.2055	-0.0013934	-0.35642	-0.00022519	631.793872971142	4.2549	0.079875	4.2549	4.2105	4.2904	0	597	31	0.924688525662974	0.0202679123489945	0.924688525662974	374.418557039915	0	8.20674452565652						118	10	3	NaN	NaN	NaN	0.00047497	1	11258	90.142	67.245	1	21619			18058	215	15219	15671	18058	18058		
SQNIVTDSSSLSAEAIR	17	Unmodified	_SQNIVTDSSSLSAEAIR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.449962	1776.88537	2.8503	0.0025352	-5.805	-0.0051633	-2.9548	-0.0026281	889.444433084058	10.463	0.15965	10.463	10.418	10.578	0	309	64	1.11800162319566	0.0419933988669257	1.11800162319566	451.26923800799	0	16.9501803171593						619	19	5	NaN	NaN	NaN	0.00022366	1	26597	93.026	62.151	1	218500			18059	1511	15220	15672	18059	18059		
SQNVMAAASIANIVK	15	Unmodified	_SQNVMAAASIANIVK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.911233	1515.80791	2.2962	0.0017426	1.4081	0.0010686	3.7043	0.0028113	758.911875579087	13.487	0.18622	13.487	13.416	13.602	0	282	157	1.13599383354359	0.104177407634357	1.13599383354359	459.142552100448	0	42.1061095580425						1408	22	4	NaN	NaN	NaN	4.2139E-08	1	19015	128.41	122.38	1	390520			18060	747	15221	15673	18060	18060		
SQPAILLLTAAR	12	Unmodified	_SQPAILLLTAAR_			0	0	0	Q5JTV8	Q5JTV8	Q5JTV8	TOR1AIP1	Torsin-1A-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.382437	1252.75032	1.0544	0.00066149	-0.76911	-0.00048253	0.28525	0.00017896	627.382049516543	14.373	0.10638	14.373	14.32	14.427	0	483	31	1.00151498427745	0.020167188996535	1.00151498427745	405.557512711927	0	8.16658276333908						221	13	3	NaN	NaN	NaN	0.0060769	1	11007	50.09	46.745	1	55130			18061	1970	15222	15674	18061	18061		
SQPELIEAHTCER	13	Unmodified	_SQPELIEAHTCER_			0	0	0	Q9BTW9	Q9BTW9	Q9BTW9	TBCD	Tubulin-specific chaperone D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.369929	1568.72531	2.4766	0.0019451	0.0476	3.7384E-05	2.5242	0.0019824	785.370404137401	4.8933	0.12412	4.8933	4.8489	4.9731	0	393	25	1.0618830335572	0.0160670595642813	1.0618830335572	429.057645240204	0	6.49195299739512						106	15	2	NaN	NaN	NaN	0.0049547	1	20617	51.569	44.822	1	21360			18062	2739	15223	15675	18062	18062		
SQPFVDHVFTFTILDNR	17	Unmodified	_SQPFVDHVFTFTILDNR_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.346052	2035.01633	-0.56601	-0.00038452	-0.55508	-0.00037709	-1.1211	-0.00076161	679.679920731758	17.184	0.1596	17.184	17.114	17.273	0	648	28	0.890187667287968	0.0182879696480781	0.890187667287968	538.440389963432	0	11.0616916755882						419	19	5	NaN	NaN	NaN	0.038286	1	32248	24.164	12.485	1	108820			18063	2348	15224	15676	18063	18063		
SQPFVDHVFTFTILDNR	17	Unmodified	_SQPFVDHVFTFTILDNR_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.346052	2035.01633	0.13748	9.3394E-05	-0.58228	-0.00039557	-0.4448	-0.00030217	679.680199147692	17.184	0.12411	17.184	17.122	17.246	0	579	40	0.936845902828289	0.0263355149208984	0.936845902828289	566.662167859849	0	15.9293432695056						428	15	5	NaN	NaN	NaN	0.0016589	1	32249	55.782	43.099	1	129410			18064	2348	15224	15676	18064	18064		
SQPVSQPLTYESGPDEVR	18	Unmodified	_SQPVSQPLTYESGPDEVR_			0	0	0	Q9H6S3	Q9H6S3	Q9H6S3	EPS8L2	Epidermal growth factor receptor kinase substrate 8-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.981626	1987.9487	2.115	0.0021044	-0.7045	-0.00070096	1.4105	0.0014034	994.979933875069	8.3963	0.044344	8.3963	8.3785	8.4229	0	225	76	1.17390432875292	0.0498822460949822	1.17390432875292	473.444003911569	0	20.1178662833616						156	6	3	NaN	NaN	NaN	0.0011769	1	31409	42.495	33.339	1	23691			18065	2908	15225	15677	18065	18065		
SQQEICEQLNINHMIQR	17	Unmodified	_SQQEICEQLNINHMIQR_			0	0	0	Q14139	Q14139	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.345728	2140.01536	1.3526	0.00096623	0.96608	0.00069011	2.3187	0.0016563	714.680531117236	11.119	0.10639	11.119	11.083	11.19	0	522	22	0.975277694896658	0.0141414531232522	0.975277694896658	589.712101658032	0	8.5507810600501						145	13	4	NaN	NaN	NaN	0.024015	1	33877	15.528	14.258	1	24413			18066	1724	15226	15678	18066	18066		
SQQLSALQEENVK	13	Unmodified	_SQQLSALQEENVK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.38082	1472.74709	1.7441	0.0012861	-2.0987	-0.0015476	-0.35459	-0.00026147	737.379966058621	6.5338	0.133	6.5338	6.4895	6.6225	0	441	37	1.02971785871157	0.0241505321586708	1.02971785871157	416.29835788445	0	9.76367147042595						274	16	3	NaN	NaN	NaN	3.5257E-05	1	17668	126.48	113.88	1	103760			18067	914	15227	15679	18067	18067		
SQQNDEEPVATSQLLK	16	Unmodified	_SQQNDEEPVATSQLLK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.944512	1785.87447	2.4184	0.0021619	-1.1873	-0.0010614	1.2311	0.0011006	894.444864897221	8.8753	0.15978	8.8753	8.831	8.9908	0	309	43	1.11800162319566	0.0280090817466732	1.11800162319566	451.251633755846	0	11.3051212412913						407	19	4	NaN	NaN	NaN	1.1539E-13	1	26850	119.79	107.11	1	99010			18068	1991	15228	15680	18068	18068		
SQQQDDIEELETK	13	Unmodified	_SQQQDDIEELETK_			0	0	0	Q9H4A3	Q9H4A3	Q9H4A3	WNK1	Serine/threonine-protein kinase WNK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.862657	1561.71076	2.3954	0.0018729	3.1507	0.0024634	5.5461	0.0043363	782.367795927611	7.2964	0.15073	7.2964	7.2432	7.394	0	414	46	1.04781950764076	0.0301527697739288	1.04781950764076	423.391853983578	0	12.1838131512442						453	18	4	NaN	NaN	NaN	0.0003404	1	20387	76.255	66.993	1	113630			18069	2891	15229	15681	18069	18069		
SQQQQLVESLHK	12	Unmodified	_SQQQQLVESLHK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.587924	1423.74194	-1.024	-0.00048702	-0.52617	-0.00025024	-1.5502	-0.00073726	475.587736079289	5.5051	0.097527	5.5051	5.4785	5.576	0	825	25	0.769815552739974	0.016388717253182	0.769815552739974	466.982406110782	0	9.94165756812822						160	12	3	NaN	NaN	NaN	0.063635	1	16204	26.579	23.701	1	41954			18070	2131	15230	15682	18070	18070		
SQSSIVPEEEQAANK	15	Unmodified	_SQSSIVPEEEQAANK_			0	0	0	Q969G3	Q969G3	Q969G3	SMARCE1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.891748	1615.76894	2.4485	0.0019805	-2.0717	-0.0016758	0.37672	0.00030473	808.890219645368	5.3012	0.17736	5.3012	5.2036	5.381	0	432	43	1.035754240522	0.0281600678501546	1.035754240522	418.3935887313	0	11.3752774411092						448	21	3	NaN	NaN	NaN	0.00015019	1	22069	87.573	72.425	1	103250			18071	2458	15231	15683	18071	18071		
SQSSNDTFPTAMHIAAAIEVHEVLLPGLQK	30	Unmodified	_SQSSNDTFPTAMHIAAAIEVHEVLLPGLQK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	801.914401	3203.6285	1.1114	0.00089128	-0.45458	-0.00036453	0.65686	0.00052675	802.414843637553	18.417	0.18628	18.417	18.319	18.506	0	399	22	1.0578662689527	0.014061585996056	1.0578662689527	851.038713838458	0	11.3123505416804						327	22	5	NaN	NaN	NaN	0.066517	1	38464	1.6376	1.5508	1	57847			18072	571	15232	15684	18072	18072		
SQSVFSGNPSIWLK	14	Unmodified	_SQSVFSGNPSIWLK_			0	0	0	Q6NUQ4	Q6NUQ4	Q6NUQ4	TMEM214	Transmembrane protein 214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.404098	1548.79364	1.7899	0.0013879	-3.4626	-0.0026849	-1.6727	-0.001297	775.402964210209	14.524	0.10641	14.524	14.48	14.586	0	423	37	1.04178812298108	0.0241305373401517	1.04178812298108	420.985632846451	0	9.75112818909844						296	13	4	NaN	NaN	NaN	5.9696E-05	1	20007	84.102	73.13	1	95316			18073	2047	15233	15685	18073	18073		
SQTDQLVLIFAGK	13	Unmodified	_SQTDQLVLIFAGK_			0	0	0	Q9UHD9	Q9UHD9	Q9UHD9	UBQLN2	Ubiquilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.395741	1418.77693	1.02	0.00072464	-1.5558	-0.0011052	-0.53575	-0.0003806	710.394832911318	16.032	0.12413	16.032	15.978	16.103	0	483	37	1.00151498427745	0.0241972834927519	1.00151498427745	405.039716212316	0	9.78603514962288						401	15	4	NaN	NaN	NaN	8.6673E-17	1	16071	168.69	123.86	1	162110			18074	3216	15234	15686	18074	18074		
SQTDVYNDSTNLACR	15	Unmodified	_SQTDVYNDSTNLACR_			0	0	0	Q9UBP0	Q9UBP0	Q9UBP0	SPAST	Spastin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.383765	1742.75298	2.5416	0.0022172	-0.89307	-0.0007791	1.6485	0.0014381	872.382363859151	6.5515	0.053193	6.5515	6.5249	6.5781	0	348	28	1.09197348738011	0.0180368604002248	1.09197348738011	440.830080774962	0	7.2814868850291						97	7	3	NaN	NaN	NaN	0.0001203	1	25664	76.563	72.58	1	15964			18075	3181	15235	15687	18075	18075		
SQTEAVTFLANHDDSR	16	Unmodified	_SQTEAVTFLANHDDSR_			0	0	0	Q9Y2S7	Q9Y2S7	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.918829	1789.8231	2.4726	0.0022152	-0.72282	-0.00064759	1.7497	0.0015676	895.918005749209	7.9615	0.097561	7.9615	7.9172	8.0148	8.8818E-16	243	43	1.16194328902838	0.0279282839901285	1.16194328902838	468.979545518318	0	11.2723177253765						271	12	3	NaN	NaN	NaN	6.0119E-05	1	26956	69.201	64.107	1	72015			18076	3351	15236	15688	18076	18076		
SQTIIQSGAVIDCEDK	16	Unmodified	_SQTIIQSGAVIDCEDK_			0	0	0	O15084	O15084	O15084	ANKRD28	Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.427641	1762.84073	2.7405	0.0024183	-1.7404	-0.0015358	1.0001	0.00088255	882.426509967494	8.8931	0.11541	8.8931	8.8576	8.973	0	327	34	1.10599442759226	0.0220207732442941	1.10599442759226	446.45018765345	0	8.88899446680898						251	14	4	NaN	NaN	NaN	1.8283E-08	1	26217	103.23	91.212	1	51668			18077	142	15237	15689	18077	18077		
SQTIYEIIDNSQGFYVCPVEPQNR	24	Unmodified	_SQTIYEIIDNSQGFYVCPVEPQNR_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	953.120229	2856.33886	0.80166	0.00076408	0.60871	0.00058017	1.4104	0.0013443	953.455041107227	17.326	0.15963	17.326	17.273	17.433	0	447	37	1.02569221487577	0.0241605388886725	1.02569221487577	619.192585778005	0	14.5852979395764						640	19	6	NaN	NaN	NaN	5.8864E-18	1	38011	111.6	106.73	1	236950			18078	3450	15238	15690	18078	18078		
SQVAELNDDDKDDEIVFK	18	Unmodified	_SQVAELNDDDKDDEIVFK_			0	0	1	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.995413	2078.96441	0.73975	0.00051338	0.44416	0.00030824	1.1839	0.00082163	694.33010294951	9.8952	0.10639	9.8952	9.8509	9.9573	0	636	46	0.898312834727904	0.0304630467152948	0.898312834727904	543.27722585084	0	18.423291831807						402	13	5	NaN	NaN	NaN	0.00088667	1	33005	36.96	35.485	1	129390			18079	2801	15239	15691	18079	18079		
SQVDHVIWPDGK	12	Unmodified	_SQVDHVIWPDGK_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.901731	1379.68336	-1.0189	-0.00046961	-0.72705	-0.0003351	-1.7459	-0.00080471	460.901555894024	7.8197	0.19513	7.8197	7.7221	7.9172	0	855	22	0.749315378969369	0.0143591237595029	0.749315378969369	454.686103026769	0	8.7131456371115						236	23	2	NaN	NaN	NaN	0.056381	1	14800	28.328	25.225	1	54272			18080	242	15240	15692	18080	18080		
SQVEEELFSVR	11	Unmodified	_SQVEEELFSVR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.832974	1321.6514	0.57794	0.0003825	0.33406	0.00022109	0.912	0.00060359	661.833070894277	11.82	0.23943	11.82	11.687	11.926	0	546	76	0.959108205975751	0.0505192007893855	0.959108205975751	388.164326875325	0	20.445817736218						566	28	4	NaN	NaN	NaN	2.135E-11	1	13028	165.39	127.8	1	231370			18081	1816	15241	15693	18081	18081		
SQVEQQQLITVEK	13	Unmodified	_SQVEQQQLITVEK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.41212	1528.80969	2.2853	0.0017492	-0.21607	-0.00016538	2.0692	0.0015838	765.411938025883	7.4117	0.097522	7.4117	7.3851	7.4826	0	414	28	1.04781950764076	0.0180891625147663	1.04781950764076	423.471932932366	0	7.31066043282908						155	12	3	NaN	NaN	NaN	2.282E-07	1	19395	119.43	108.46	1	44767			18082	2080	15242	15694	18082	18082		
SQVFSTAADGQTQVEIK	17	Unmodified	_SQVFSTAADGQTQVEIK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.95488	1807.89521	2.6492	0.0023974	-0.95764	-0.00086662	1.6916	0.0015308	904.954170167086	9.0972	0.4434	9.0972	9.0262	9.4696	0	294	88	1.12800004657306	0.0579669749036662	1.12800004657306	455.244501571369	0	23.3946325426062						1952	51	6	NaN	NaN	NaN	1.1241E-56	1	27428	307.3	280.72	1	1211700			18083	1007	15243	15695	18083	18083		
SQVMDEATALQLR	13	Unmodified	_SQVMDEATALQLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.37194	1460.72933	1.7068	0.0012483	-2.7942	-0.0020436	-1.0874	-0.00079531	731.371302851211	11.092	0.13301	11.092	11.03	11.163	0	465	73	1.01360860968299	0.0483211026601307	1.01360860968299	409.817029368386	0	19.5369401550101						457	16	4	NaN	NaN	NaN	1.1486E-07	1	17292	154.66	129.84	1	182120			18084	1816	15244	15696	18084	18084		
SQVTHYSNLLCDLLR	15	Unmodified	_SQVTHYSNLLCDLLR_			0	0	0	P56945	P56945	P56945	BCAR1	Breast cancer anti-estrogen resistance protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.977082	1817.90942	-2.1314	-0.0012937	-0.25938	-0.00015744	-2.3908	-0.0014511	607.311099559515	15.695	0.053193	15.695	15.677	15.73	0	738	22	0.829104889055312	0.0142833636988314	0.829104889055312	501.898954187056	0	8.64643954866204						100	7	3	NaN	NaN	NaN	9.353E-05	1	27663	61.067	57.778	1	19719			18085	1290	15245	15697	18085	18085		
SQVVAGTNYFIK	12	Unmodified	_SQVVAGTNYFIK_			0	0	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.856252	1325.69795	1.5293	0.0010152	1.0542	0.00069986	2.5835	0.0017151	663.857517386832	9.9484	0.31033	9.9484	9.8332	10.143	0	510	85	0.983355730988811	0.0564837881999326	0.983355730988811	397.965062667094	0	22.8590464287606						1121	36	5	NaN	NaN	NaN	0.00021281	1	13161	87.942	78.428	1	892690			18086	505	15246	15698	18086	18086		
SQWYELQQLDSK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SQWYELQQLDSK_			1	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.87537	1565.73619	0.93018	0.00072915	1.9431	0.0015231	2.8733	0.0022523	783.877009841743	15.642	0.15958	15.642	15.588	15.748	1.7764E-15	378	46	1.07192009927972	0.030107052507665	1.07192009927972	433.120385069669	0	12.1650654598181						280	19	3	NaN	NaN	NaN	0.00040545	1	20522	88.24	79.767	1	59418			18087	1044	15247	15699	18087	18087		
SQYNFIADVVEK	12	Unmodified	_SQYNFIADVVEK_			0	0	0	O43464	O43464	O43464	HTRA2	Serine protease HTRA2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.856449	1411.69835	1.1388	0.00080499	-1.1857	-0.00083815	-0.04692	-3.3165E-05	706.85529004123	13.655	0.1862	13.655	13.575	13.762	0	477	49	1.0055473068722	0.0322407656624188	1.0055473068722	406.690180330157	0	13.0396677626405						281	22	4	NaN	NaN	NaN	0.00045175	1	15811	64.266	56.264	1	63946			18088	204	15248	15700	18088	18088		
SREIFLSQPILLELEAPLK	19	Unmodified	_SREIFLSQPILLELEAPLK_			0	0	1	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.759462	2195.25656	-0.58422	-0.00042809	-0.52028	-0.00038124	-1.1045	-0.00080934	733.093439324014	18.94	0.079806	18.94	18.896	18.976	0	618	28	0.910492137470517	0.018260091794093	0.910492137470517	550.449563274335	0	11.0393699624159						189	10	4	NaN	NaN	NaN	6.082E-07	1	34627	73.345	62.587	1	36810			18089	1366;992;1365	15249	15701	18089	18089		
SSADTEFSDECTTAER	16	Unmodified	_SSADTEFSDECTTAER_			0	0	0	Q9H6S0	Q9H6S0	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.360152	1804.70575	1.744	0.0015754	0.12249	0.00011065	1.8665	0.0016861	903.360163172711	5.381	0.062088	5.381	5.3544	5.4164	0	384	22	1.06790610341098	0.0140499548984649	1.06790610341098	430.997250148271	0	5.67043479441116						108	8	3	NaN	NaN	NaN	3.0325E-06	1	27341	61.042	59.568	1	19704			18090	2907	15250	15702	18090	18090		
SSAQDPQAVLGALGR	15	Unmodified	_SSAQDPQAVLGALGR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.388979	1468.76341	0.53973	0.00039691	0.13626	0.00010021	0.67599	0.00049712	735.389360346976	11.988	0.15962	11.988	11.917	12.077	0	450	52	1.02367897599655	0.0342297995657299	1.02367897599655	413.867373951727	0	13.8389061310667						550	19	4	NaN	NaN	NaN	4.4498E-08	1	17549	133.07	118.31	1	368550			18091	858	15251	15703	18091	18091		
SSASAPDVDDPEAFPALA	18	Unmodified	_SSASAPDVDDPEAFPALA_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	880.404689	1758.79482	2.6255	0.0023115	-0.90881	-0.00080012	1.7167	0.0015114	880.403940920862	15.198	0.12418	15.198	15.136	15.26	0	351	109	1.08996939197032	0.0720532013753512	1.08996939197032	439.989352126307	0	29.0858088541906						1199	15	5	NaN	NaN	NaN	3.6442E-14	1	26101	187.85	183.32	1	529330			18092	2296	15252	15704	18092	18092		
SSATVTGEPPSYSSGSDSSK	20	Unmodified	_SSATVTGEPPSYSSGSDSSK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.929256	1929.84396	3.1327	0.003026	-4.3282	-0.0041808	-1.1955	-0.0011548	965.927339037716	4.5386	0.035484	4.5386	4.5209	4.5563	0	294	19	1.12800004657306	0.011997282593982	1.12800004657306	455.025454016116	0	4.83959994139292						34	5	2	NaN	NaN	NaN	0.020376	1	30280	39.82	36.315	1	5386.3			18093	978	15253	15705	18093	18093		
SSAVVVDAIPVFLEK	15	Unmodified	_SSAVVVDAIPVFLEK_			0	0	0	Q14669	Q14669	Q14669	TRIP12	E3 ubiquitin-protein ligase TRIP12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.445431	1572.87631	0.64566	0.00050842	-0.55881	-0.00044003	0.086851	6.8391E-05	787.444962272778	17.202	0.079808	17.202	17.158	17.238	0	411	25	1.04982941439551	0.0160759277723759	1.04982941439551	424.177544121391	0	6.49538626795447						150	10	3	NaN	NaN	NaN	0.0018072	1	20763	74.524	66.149	1	27730			18094	1761	15254	15706	18094	18094		
SSAYESLMEIVK	12	Unmodified	_SSAYESLMEIVK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.83941	1355.66427	1.3496	0.00091615	0.22415	0.00015216	1.5737	0.0010683	678.839865146309	15.429	0.31048	15.429	15.349	15.659	0	501	70	0.98941132619024	0.0464198396417231	0.98941132619024	400.324452687616	0	18.7818720147202						1022	36	4	NaN	NaN	NaN	0.0023598	1	14060	81.335	62.999	1	665960			18095	1780	15255	15707	18095	18095		
SSCQIIQFMEGDK	13	Unmodified	_SSCQIIQFMEGDK_			0	0	0	Q5TAQ9	Q5TAQ9	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.849984	1541.68541	1.3474	0.00104	-0.7665	-0.00059162	0.58086	0.00044833	771.849535806381	13.629	0.10641	13.629	13.584	13.691	0	444	28	1.02770517576159	0.0181141482765854	1.02770517576159	415.311681566624	0	7.32020968496226						204	13	3	NaN	NaN	NaN	0.0068864	1	19760	37.504	30.364	1	45783			18096	1998	15256	15708	18096	18096		
SSCTLFQDIFQHLDK	15	Unmodified	_SSCTLFQDIFQHLDK_			0	0	0	Q9UNW1	Q9UNW1	Q9UNW1	MINPP1	Multiple inositol polyphosphate phosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.629571	1837.86688	-1.5346	-0.00094167	0.71759	0.00044033	-0.817	-0.00050134	613.964357523558	18.133	0.053202	18.133	18.115	18.169	0	702	16	0.853568545818287	0.0101839878365509	0.853568545818287	516.665596351485	0	6.16437446598229						78	7	3	NaN	NaN	NaN	0.064424	1	28180	13.778	12.067	1	13150			18097	3307	15257	15709	18097	18097		
SSCTLPEGTNSSPQEIDPTK	20	Unmodified	_SSCTLPEGTNSSPQEIDPTK_			0	0	0	Q92544	Q92544	Q92544	TM9SF4	Transmembrane 9 superfamily member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.4917	2146.96884	2.0354	0.002187	-1.1293	-0.0012135	0.90609	0.00097359	1074.99237799136	7.5713	0.11526	7.5713	7.5181	7.6334	0	192	52	1.1958073123591	0.0338314842791501	1.1958073123591	482.029865569673	0	13.6374695576405						511	14	4	NaN	NaN	NaN	8.6738E-08	1	33977	106.58	104.03	1	100840			18098	2411	15258	15710	18098	18098		
SSDEAVILCK	10	Unmodified	_SSDEAVILCK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.278989	1120.54342	0.93947	0.0005273	4.1931	0.0023535	5.1326	0.0028808	561.280728236989	6.2234	0.27489	6.2234	6.1702	6.4451	0	633	61	0.900343422309015	0.0406314919557856	0.900343422309015	365.057218770188	0	16.4746241049023						508	32	2	NaN	NaN	NaN	0.00096967	1	7278	96.311	76.077	1	209460			18099	3300	15259	15711	18099	18099		
SSDGSLSHEEDLAK	14	Unmodified	_SSDGSLSHEEDLAK_			0	0	0	Q13136	Q13136	Q13136	PPFIA1	Liprin-alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.836442	1473.65833	2.6155	0.0019298	-2.09	-0.0015421	0.5255	0.00038774	737.834758157535	4.113	0.053225	4.113	4.0864	4.1396	0	417	22	1.04580932352505	0.0140712896137907	1.04580932352505	422.801444616308	0	5.68876318320815						78	7	2	NaN	NaN	NaN	0.0011902	1	17687	55.754	44.399	1	17381			18100	1632	15260	15712	18100	18100		
SSDPLGDTASNLGSAVDELMR	21	Unmodified	_SSDPLGDTASNLGSAVDELMR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.99969	2133.98483	0.90016	0.00096137	1.1799	0.0012602	2.0801	0.0022216	1068.50334390835	18.976	0.16845	18.976	18.878	19.046	0	150	37	1.22363604450103	0.0238368401892524	1.22363604450103	493.266909155183	0	9.60900468486381						436	20	4	NaN	NaN	NaN	1.4492E-05	1	33793	71.912	66.297	1	86428			18101	2149	15261	15713	18101	18101		
SSEAETQQPPAAPPAAPALSAADTK	25	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSEAETQQPPAAPPAAPALSAADTK_			1	0	0	P67809	P67809	P67809	YBX1	Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.734481	2447.18161	1.9448	0.0015884	0.12679	0.00010356	2.0716	0.001692	817.068875867193	10.729	0.19507	10.729	10.667	10.862	0	465	67	1.01360860968299	0.0443617044097231	1.01360860968299	612.393402078401	0	26.8020760932202						1259	23	5	NaN	NaN	NaN	1.6692E-13	1	36563	142.76	142.16	1	311040			18102	1440	15262	15714	18102	18102		
SSEAVIWEVLR	11	Unmodified	_SSEAVIWEVLR_			0	0	0	Q9UNF1	Q9UNF1	Q9UNF1	MAGED2	Melanoma-associated antigen D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.848427	1287.6823	0.92948	0.00059937	-1.6972	-0.0010944	-0.76771	-0.00049506	644.846466278804	16.103	0.15076	16.103	16.049	16.2	0	501	97	0.98941132619024	0.0646780299833856	0.98941132619024	400.537702256587	0	26.1832352534104						585	18	4	NaN	NaN	NaN	0.00088533	1	12001	69.915	63.224	1	195950			18103	3295	15263	15715	18103	18103		
SSEHINEGETAMLVCK	16	Unmodified	_SSEHINEGETAMLVCK_			0	0	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.913843	1803.81313	2.8268	0.0025524	-2.0607	-0.0018606	0.76616	0.00069177	902.912668342522	6.853	0.16846	6.853	6.8087	6.9771	0	309	61	1.11800162319566	0.0400184925300473	1.11800162319566	451.217059313315	0	16.151163059984						765	20	4	NaN	NaN	NaN	3.3111E-06	1	27310	73.305	66.45	1	339040			18104	976	15264	15716	18104	18104		
SSEHINEGETAMLVCK	16	Unmodified	_SSEHINEGETAMLVCK_			0	0	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.278321	1803.81313	1.1499	0.00069258	0.48375	0.00029135	1.6337	0.00098393	602.278897030846	6.8441	0.16846	6.8441	6.8087	6.9771	0	615	46	0.912521036363781	0.0304377111147065	0.912521036363781	552.427593355567	0	18.4265686250394						592	20	6	NaN	NaN	NaN	6.8939E-07	1	27311	150.44	140.7	1	300720			18105	976	15264	15716	18105	18105		
SSEIEQAVQSLDR	13	Unmodified	_SSEIEQAVQSLDR_			0	0	0	Q9BPX5	Q9BPX5	Q9BPX5	ARPC5L	Actin-related protein 2/3 complex subunit 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.362627	1460.7107	0.82138	0.00060072	1.4592	0.0010672	2.2805	0.0016679	731.362416606125	12.352	0.14188	12.352	12.272	12.414	0	495	55	0.993446994398923	0.0363059678066375	0.993446994398923	401.665420589756	0	14.6790436844539						421	17	3	NaN	NaN	NaN	3.0262E-11	1	17287	175.54	133.74	1	136420			18106	2688	15265	15717	18106	18106		
SSELEQYLQR	10	Unmodified	_SSELEQYLQR_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.812042	1251.60953	1.9236	0.0012057	-0.96511	-0.00060494	0.95845	0.00060077	626.811644463439	9.78	0.19513	9.78	9.6824	9.8776	0	564	49	0.946969335010767	0.0323703311033066	0.946969335010767	383.473388799448	0	13.1083025667394						456	23	3	NaN	NaN	NaN	4.1495E-10	1	10957	118.06	101.6	1	127700			18107	3209	15266	15718	18107	18107		
SSEMNVLIPTEGGDFNEFPVPEQFK	25	Unmodified	_SSEMNVLIPTEGGDFNEFPVPEQFK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	937.77758	2810.31091	0.65926	0.00061824	0.12602	0.00011817	0.78528	0.00073642	938.1117837196	18.656	0.079789	18.656	18.621	18.701	0	480	82	1.00353128488872	0.0544175996021309	1.00353128488872	605.862497458593	0	32.8535674942158						464	10	4	NaN	NaN	NaN	0.00052074	1	37923	53.193	52.546	1	82250			18108	1516	15267	15719	18108	18108		
SSENILTVHEQANVESLK	18	Unmodified	_SSENILTVHEQANVESLK_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.676126	1997.00655	-0.63114	-0.00042076	0.77308	0.00051539	0.14194	9.4629E-05	666.676590165303	9.31	0.07099	9.31	9.2834	9.3544	0	684	28	0.86578508874114	0.018315911392907	0.86578508874114	523.747668129154	0	11.080019749062						142	9	3	NaN	NaN	NaN	0.013254	1	31581	30.027	22.379	1	29844			18109	1974	15268	15720	18109	18109		
SSENPNEVFR	10	Unmodified	_SSENPNEVFR_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.775459	1177.53637	0.94196	0.00055554	-2.3835	-0.0014057	-1.4415	-0.00085016	589.774004597357	5.3278	0.23945	5.3278	5.2125	5.4519	0	654	52	0.886123392477847	0.0345295780335751	0.886123392477847	359.080132715685	0	13.9922786918445						599	28	3	NaN	NaN	NaN	0.0050796	1	8812	81.163	54.707	1	168450			18110	1072	15269	15721	18110	18110		
SSESELCIETPK	12	Unmodified	_SSESELCIETPK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.321582	1378.62861	1.1763	0.00081199	-0.67311	-0.00046466	0.50314	0.00034733	690.320976832242	7.5447	0.25713	7.5447	7.394	7.6511	0	522	40	0.975277694896658	0.0262627024268471	0.975277694896658	394.539515607448	0	10.6243318679904						486	30	3	NaN	NaN	NaN	5.4335E-05	1	14757	87.942	78.428	1	134650			18111	2149	15270	15722	18111	18111		
SSEVFTTFK	9	Unmodified	_SSEVFTTFK_			0	0	0	P40222	P40222	P40222	TXLNA	Alpha-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.263665	1044.51278	0.14639	7.6602E-05	-1.1934	-0.00062446	-1.047	-0.00054786	523.26304280467	8.414	0.204	8.414	8.343	8.547	0	711	40	0.847456455381371	0.0264783729728815	0.847456455381371	343.917224186489	0	10.7455297271998						242	24	2	NaN	NaN	NaN	0.0017759	1	5333	58.426	52.678	1	67755			18112	1015	15271	15723	18112	18112		
SSFADISNLLQIEPR	15	Unmodified	_SSFADISNLLQIEPR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.443951	1688.87335	1.729	0.0014618	-0.34325	-0.00029019	1.3857	0.0011716	845.443903469486	18.311	0.12413	18.311	18.248	18.373	0	315	79	1.11400032671325	0.0520527185893278	1.11400032671325	449.835530472861	0	21.0189904955137						795	15	4	NaN	NaN	NaN	1.9837E-18	1	24185	180.17	169.38	1	304070			18113	1867	15272	15724	18113	18113		
SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK	30	Unmodified	_SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	809.386102	3233.5153	0.94181	0.00076229	0.64069	0.00051856	1.5825	0.0012809	809.637191069882	16.759	0.17737	16.759	16.697	16.874	0	432	40	1.035754240522	0.0261576594975734	1.035754240522	833.216592216191	0	21.0426325611136						772	21	7	NaN	NaN	NaN	3.2757E-22	1	38490	196.04	194.01	1	386210			18114	1465	15273	15725	18114	18114		
SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK	30	Unmodified	_SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1078.84571	3233.5153	0.85388	0.00092121	0.93933	0.0010134	1.7932	0.0019346	1079.18128300061	16.75	0.079809	16.75	16.714	16.794	0	288	85	1.13199748998575	0.0559719608145099	1.13199748998575	682.980801788314	0	33.7701938501995						735	10	5	NaN	NaN	NaN	0.00019966	1	38491	24.457	19.551	1	159190			18115	1465	15273	15725	18115	18115		
SSFESSCPQQWIK	13	Unmodified	_SSFESSCPQQWIK_			0	0	0	Q5JTJ3	Q5JTJ3	Q5JTJ3	COA6	Cytochrome c oxidase assembly factor 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.361573	1582.70859	2.3072	0.0018281	0.21048	0.00016678	2.5176	0.0019949	792.361977711817	10.507	0.26605	10.507	10.418	10.684	0	426	52	1.03977710643793	0.0341825748875688	1.03977710643793	420.093186302136	0	13.8105241129267						792	31	4	NaN	NaN	NaN	2.1161E-11	1	21047	165.39	155.65	1	263700			18116	1969	15274	15726	18116	18116		
SSFLPSYIIDVR	12	Unmodified	_SSFLPSYIIDVR_			0	0	0	Q10570	Q10570	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.877185	1395.73982	0.37923	0.00026504	-1.1178	-0.00078118	-0.73853	-0.00051614	699.376798363935	16.369	0.10643	16.369	16.324	16.431	0	435	46	1.03374239103424	0.030194421347751	1.03374239103424	418.13995869495	0	12.213385273419						306	13	4	NaN	NaN	NaN	0.00062481	1	15327	65.933	32.507	1	66578			18117	1588	15275	15727	18117	18117		
SSFLQVFNNSPDESSYYR	18	Unmodified	_SSFLQVFNNSPDESSYYR_			0	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.48453	2138.95451	1.5848	0.0016965	8.4246	0.0090184	10.009	0.010715	1071.49976988726	15.189	0.10643	15.189	15.101	15.207	1.7764E-15	174	67	1.20774045859593	0.0437308796161957	1.20774045859593	486.851811258705	0	17.6283387689377						353	13	3	NaN	NaN	NaN	0.0015826	1	33859	66.485	65.966	1	80245			18118	1850	15276	15728	18118	18118		
SSFLVDCSK	9	Unmodified	_SSFLVDCSK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.747324	1041.4801	0.31134	0.00016244	0.41384	0.00021592	0.72518	0.00037836	521.747826689699	6.658	0.20395	6.658	6.5781	6.7821	0	705	37	0.851531465363931	0.0244500640244978	0.851531465363931	345.584040418271	0	9.92277121604678						224	24	3	NaN	NaN	NaN	0.0014723	1	5251	60.892	47.244	1	68728			18119	326	15277	15729	18119	18119		
SSFSHYSGLK	10	Unmodified	_SSFSHYSGLK_			0	0	0	Q8NC51	Q8NC51	Q8NC51	SERBP1	Plasminogen activator inhibitor 1 RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.772188	1111.52982	1.9645	0.0010938	1.2418	0.00069141	3.2063	0.0017852	556.772790995969	4.3169	0.3458	4.3169	4.2549	4.6007	0	627	73	0.90440375274676	0.0487442756818737	0.90440375274676	366.739684636034	0	19.7660173756353						729	40	4	NaN	NaN	NaN	6.2332E-09	1	7024	166.61	110.6	1	352500			18120	2296	15278	15730	18120	18120		
SSFYPDGGDQETAK	14	Unmodified	_SSFYPDGGDQETAK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.32571	1500.63687	2.1891	0.0016447	-1.0574	-0.00079445	1.1317	0.00085026	751.324973847527	5.5583	0.23946	5.5583	5.4873	5.7268	0	474	43	1.00756305028564	0.0282184646673942	1.00756305028564	407.271048015916	0	11.4062972785987						526	28	5	NaN	NaN	NaN	0.0002787	1	18533	71.896	48.843	1	171940			18121	3113	15279	15731	18121	18121		
SSFYVNGLTLGGQK	14	Unmodified	_SSFYVNGLTLGGQK_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.882998	1469.75144	1.1351	0.00083529	0.29241	0.00021518	1.4275	0.0010505	735.883504436406	12.307	0.16848	12.307	12.227	12.396	0	453	46	1.02166545906632	0.0301985912511542	1.02166545906632	413.050728911261	0	12.2090357638025						400	20	3	NaN	NaN	NaN	0.00015709	1	17579	62.705	43.381	1	205110			18122	563	15280	15732	18122	18122		
SSGCDVNLPGVNVK	14	Unmodified	_SSGCDVNLPGVNVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.35629	1444.69803	1.7659	0.0012774	-4.3046	-0.0031138	-2.5387	-0.0018364	723.354954111357	9.044	0.21284	9.044	8.9553	9.1681	0	480	49	1.00353128488872	0.0322541328760771	1.00353128488872	405.784864974916	0	13.0421832892368						679	25	4	NaN	NaN	NaN	7.4143E-08	1	16811	138.71	132.02	1	247000			18123	1584	15281	15733	18123	18123		
SSGEIVYCGQVFEK	14	Unmodified	_SSGEIVYCGQVFEK_			0	0	0	Q02543	Q02543	Q02543	RPL18A	60S ribosomal protein L18a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.877056	1601.73956	2.9634	0.0023763	1.023	0.00082034	3.9864	0.0031966	801.878302982711	9.78	0.34579	9.78	9.709	10.055	0	402	67	1.05585747106793	0.044190530874429	1.05585747106793	426.546042815634	0	17.8521217028895						1341	40	6	NaN	NaN	NaN	2.2689E-24	1	21625	224.49	192.44	1	1039700			18124	1528	15282	15734	18124	18124		
SSGIHVALVTGGNK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSGIHVALVTGGNK_			1	0	0	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.37534	1380.73613	1.7537	0.0012124	2.615	0.0018079	4.3686	0.0030204	691.376521442896	9.5849	0.22168	9.5849	9.5317	9.7534	0	462	73	1.01562323939346	0.0483211026601307	1.01562323939346	410.854690091441	0	19.5475555188763						834	26	5	NaN	NaN	NaN	6.9652E-06	1	14863	108.2	97.408	1	504510			18125	724	15283	15735	18125	18125		
SSGPYGGGGQYFAK	14	Unmodified	_SSGPYGGGGQYFAK_			0	0	0	P09651;Q32P51	P09651	P09651	HNRNPA1;HNRNPA1L2	Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.317491	1374.62043	1.8224	0.0012544	0.4106	0.00028262	2.233	0.001537	688.317659534976	6.4451	0.28374	6.4451	6.3476	6.6313	0	510	49	0.983355730988811	0.0322987503458569	0.983355730988811	397.81892228521	0	13.0665370108002						912	33	4	NaN	NaN	NaN	2.2884E-11	1	14642	155.57	149.71	1	461440			18126	608	15284	15736	18126	18126		
SSGSSYPSLLQCLK	14	Unmodified	_SSGSSYPSLLQCLK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.879598	1525.74464	2.1053	0.0016082	-1.8855	-0.0014403	0.21981	0.00016791	763.878265141891	13.026	0.45225	13.026	12.795	13.247	0	396	121	1.05987478976334	0.0803132877009227	1.05987478976334	428.351753494192	0	32.4588696210572						1951	52	4	NaN	NaN	NaN	0.0025452	1	19294	69.276	65.931	1	845060		+	18127	24	15285	15737	18127	18127		
SSGTFLSGLSDCTNVTFSK	19	Unmodified	_SSGTFLSGLSDCTNVTFSK_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.47004	2006.92552	1.6319	0.0016392	1.7759	0.0017838	3.4078	0.003423	1004.47295392449	14.444	0.21279	14.444	14.32	14.533	0	174	49	1.20774045859593	0.0318260997868145	1.20774045859593	487.058411094439	0	12.834851629894						313	25	4	NaN	NaN	NaN	2.1642E-10	1	31751	93.649	86.073	1	62750			18128	1968	15286	15738	18128	18128		
SSGVPVDGFYTEEVR	15	Unmodified	_SSGVPVDGFYTEEVR_			0	0	0	Q9BSD7	Q9BSD7	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.391384	1640.76822	2.0943	0.0017202	-1.378	-0.0011319	0.71624	0.00058832	821.391232501839	11.039	0.133	11.039	10.977	11.11	0	384	49	1.06790610341098	0.032111976565327	1.06790610341098	431.325479444355	0	12.9699733372674						476	16	5	NaN	NaN	NaN	7.402E-05	1	22770	77.157	71.77	1	157930			18129	2722	15287	15739	18129	18129		
SSHSTWPVDVSQIK	14	Unmodified	_SSHSTWPVDVSQIK_			0	0	0	Q6P2E9	Q6P2E9	Q6P2E9	EDC4	Enhancer of mRNA-decapping protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.26685	1569.77872	-0.87777	-0.00046018	-0.46127	-0.00024183	-1.339	-0.00070201	524.266285874074	9.913	0.097453	9.913	9.8776	9.975	0	753	22	0.81889964927511	0.0142913101718418	0.81889964927511	496.313312106349	0	8.66158325016335						157	12	3	NaN	NaN	NaN	0.015193	1	20656	51.531	44.391	1	36281			18130	2063	15288	15740	18130	18130		
SSHYDELLAAEAR	13	Unmodified	_SSHYDELLAAEAR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.352062	1460.68957	1.4889	0.0010889	1.7546	0.0012832	3.2434	0.0023721	731.35323021056	7.5358	0.16847	7.5358	7.4738	7.6422	0	459	67	1.01763759082241	0.0442943392475985	1.01763759082241	411.446093826622	0	17.9088636528524						748	20	4	NaN	NaN	NaN	2.6188E-07	1	17284	101.64	90.161	1	358430			18131	2108	15289	15741	18131	18131		
SSIAGLLLK	9	Unmodified	_SSIAGLLLK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.289485	900.564418	-0.71863	-0.00032431	-0.09873	-4.4556E-05	-0.81736	-0.00036886	451.288639050123	12.751	0.13303	12.751	12.697	12.83	0	750	46	0.820941264895493	0.0306327620085797	0.820941264895493	333.848630872296	0	12.4572927366528						263	16	3	NaN	NaN	NaN	0.04731	1	2344	41.025	34.794	1	62330			18132	1816	15290	15742	18132	18132		
SSIGTGYDLSASTFSPDGR	19	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSIGTGYDLSASTFSPDGR_			1	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.450159	1958.88576	1.2311	0.001207	1.3176	0.0012918	2.5487	0.0024988	980.952901973802	14.914	0.2128	14.914	14.852	15.065	0	162	76	1.21569043230068	0.0496635180222542	1.21569043230068	490.347067058352	0	20.031711819863						1105	25	4	NaN	NaN	NaN	1.579E-07	1	30874	107.6	93.824	1	286550			18133	843	15291	15743	18133	18133		
SSILLDVKPWDDETDMAK	18	Unmodified	_SSILLDVKPWDDETDMAK_			0	0	1	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.338234	2061.99287	0.8371	0.00057621	-1.3011	-0.00089558	-0.46399	-0.00031938	688.671989224616	14.267	0.20393	14.267	14.223	14.427	1.7764E-15	618	67	0.910492137470517	0.0446265209957717	0.910492137470517	550.673011863384	0	26.9904809875659						917	24	6	NaN	NaN	NaN	1.6973E-10	1	32733	128.68	124.13	1	612190			18134	829	15292	15744	18134	18134		
SSILLDVKPWDDETDMAK	18	Unmodified	_SSILLDVKPWDDETDMAK_			0	0	1	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.00371	2061.99287	2.1834	0.0022533	1.004	0.0010361	3.1874	0.0032894	1032.00743903362	14.267	0.26597	14.267	14.205	14.471	0	159	118	1.21767724410157	0.0774220574654709	1.21767724410157	490.97562914332	0	31.2170926719799						1631	31	5	NaN	NaN	NaN	7.6312E-09	1	32734	110.9	106.6	1	532930			18135	829	15292	15744	18135	18135		
SSILLDVKPWDDETDMAK	18	Oxidation (M)	_SSILLDVKPWDDETDM(Oxidation (M))AK_	SSILLDVKPWDDETDM(1)AK	SSILLDVKPWDDETDM(48)AK	0	1	1	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.669872	2077.98779	0.17933	0.00012439	-0.45207	-0.00031359	-0.27274	-0.00018919	694.003991598442	13.354	0.10646	13.354	13.318	13.425	0	630	76	0.902373728295776	0.0507084496330698	0.902373728295776	545.73485651641	0	30.6673029332724						545	13	4	NaN	NaN	NaN	0.0018583	1	32985	48.363	39.996	1	138160			18136	829	15292	15745	18136	18136	279	
SSILLDVKPWDDETDMAQLEACVR	24	Unmodified	_SSILLDVKPWDDETDMAQLEACVR_			0	0	1	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	931.114087	2790.32043	0.62738	0.00058416	1.1003	0.0010245	1.7276	0.0016086	931.449565825381	17.406	0.14186	17.406	17.344	17.486	0	444	55	1.02770517576159	0.0362358117053279	1.02770517576159	620.478899397101	0	21.8774382925734						612	17	5	NaN	NaN	NaN	5.7652E-13	1	37869	96.26	95.233	1	137390			18137	890	15293	15746	18137	18137		
SSLEWNSCVVQTLK	14	Unmodified	_SSLEWNSCVVQTLK_			0	0	0	P49792;A6NKT7;Q7Z3J3;Q99666;O14715;P0DJD0;P0DJD1	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4;RGPD5;RGPD8;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.91143	1649.80831	2.4786	0.0020471	4.2336	0.0034966	6.7123	0.0055437	825.914504492241	12.813	0.10641	12.813	12.768	12.875	0	267	10	1.14597988355104	0.00598833474879878	1.14597988355104	462.838089884746	0	2.41856725105504						73	13	2	NaN	NaN	NaN	5.9643E-06	1	23032	110.44	95.292	1	25612			18138	1151;19	15294	15747	18138	18138		
SSLGPVGLDK	10	Unmodified	_SSLGPVGLDK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.771657	971.528761	0.24152	0.00011756	-0.34013	-0.00016556	-0.09861	-4.8E-05	486.771671331366	7.2077	0.37241	7.2077	7.1368	7.5092	0	735	67	0.831145085810763	0.0448562890610408	0.831145085810763	337.627141381494	0	18.2214885309559						954	43	4	NaN	NaN	NaN	0.0067858	1	3666	76.572	55.914	1	604270			18139	747	15295	15748	18139	18139		
SSLGQSASETEEDTVSVSK	19	Unmodified	_SSLGQSASETEEDTVSVSK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.950189	1939.88582	3.0229	0.0029351	-2.0493	-0.0019898	0.97363	0.00094535	970.948304012223	6.8885	0.15958	6.8885	6.8619	7.0214	0	249	43	1.15795408347545	0.027935963941738	1.15795408347545	467.091382348802	0	11.2687093564443						420	19	4	NaN	NaN	NaN	1.5224E-14	1	30502	112.67	92.784	1	96120			18140	1667	15296	15749	18140	18140		
SSLNPILFR	9	Unmodified	_SSLNPILFR_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.803291	1045.59203	-0.20391	-0.00010681	0.37453	0.00019618	0.17062	8.9371E-05	524.305715052809	12.13	0.31925	12.13	11.944	12.263	0	678	55	0.869855008346864	0.0366343767135493	0.869855008346864	353.002321869032	0	14.8668685194843						635	37	4	NaN	NaN	NaN	0.0077494	1	5382	67.903	51.445	1	219790			18141	1011	15297	15750	18141	18141		
SSLQSQCLNEVLK	13	Unmodified	_SSLQSQCLNEVLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.385048	1504.75554	1.6909	0.0012739	-0.67911	-0.00051163	1.0118	0.00076226	753.385379187161	9.9839	0.17731	9.9839	9.9307	10.108	0	441	37	1.02971785871157	0.0241505321586708	1.02971785871157	416.215918148648	0	9.7617379665308						416	21	4	NaN	NaN	NaN	1.7472E-05	1	18658	128.97	83.484	1	198930			18142	1737	15298	15751	18142	18142		
SSLSHAMVIDSR	12	Unmodified	_SSLSHAMVIDSR_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.827169	1301.63978	2.2217	0.0014482	-0.44567	-0.0002905	1.776	0.0011577	651.826299770421	5.7002	0.13308	5.7002	5.6381	5.7711	0	498	40	0.991429299781895	0.0262372893807942	0.991429299781895	401.308942871657	0	10.6202821195022						262	16	3	NaN	NaN	NaN	4.1969E-05	1	12396	99.174	96.072	1	83919			18143	3421	15299	15752	18143	18143		
SSLSNNECGSLDK	13	Unmodified	_SSLSNNECGSLDK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.811913	1409.60927	2.5298	0.0017856	0.21206	0.00014968	2.7419	0.0019352	705.811679428515	3.7051	0.07979	3.7051	3.6785	3.7583	0	525	25	0.973257487423603	0.0161650151283204	0.973257487423603	393.636327024085	0	6.53797917162217						143	10	3	NaN	NaN	NaN	0.028248	1	15733	40.861	39.061	1	26674			18144	2005	15300	15753	18144	18144		
SSLSSAQADFNQLAELDR	18	Unmodified	_SSLSSAQADFNQLAELDR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.471426	1950.9283	1.0996	0.0010737	2.5387	0.002479	3.6383	0.0035527	976.474531606936	14.799	0.17734	14.799	14.719	14.897	0	231	61	1.16991841121525	0.0398591940007655	1.16991841121525	471.898521606195	0	16.0776123711374						795	21	5	NaN	NaN	NaN	5.7624E-19	1	30734	173.15	148.46	1	291120			18145	1703	15301	15754	18145	18145		
SSMDGAGAEEVLAPLR	16	Unmodified	_SSMDGAGAEEVLAPLR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.893237	1601.77192	1.2925	0.0010364	-3.5509	-0.0028474	-2.2584	-0.001811	801.891887695512	12.485	0.088676	12.485	12.467	12.556	0	411	25	1.04982941439551	0.0160803646300043	1.04982941439551	424.110767436921	0	6.49615612820634						80	11	2	NaN	NaN	NaN	0.0074229	1	21634	40.224	34.197	1	22606			18146	1035	15302	15755	18146	18146		
SSMNPEYDYLFK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSMNPEYDYLFK_			1	0	0	P62820	P62820	P62820	RAB1A	Ras-related protein Rab-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.339775	1534.665	0.76255	0.0005859	0.52116	0.00040043	1.2837	0.00098633	768.340047390669	16.315	0.10639	16.315	16.271	16.377	0	429	31	1.03776581230406	0.0201143318791703	1.03776581230406	419.394410915928	0	8.12884590089044						285	13	4	NaN	NaN	NaN	0.0046731	1	19560	72.922	69.577	1	81266			18147	1398	15303	15756	18147	18147		
SSNFLVTQGYQVK	13	Unmodified	_SSNFLVTQGYQVK_			0	0	0	Q8NB16	Q8NB16	Q8NB16	MLKL	Mixed lineage kinase domain-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.882998	1469.75144	1.4642	0.0010775	-0.13439	-9.8897E-05	1.3298	0.00097858	735.882872851935	9.9662	0.14186	9.9662	9.913	10.055	0	441	46	1.02971785871157	0.0301860841315895	1.02971785871157	416.30624783753	0	12.2039792894861						383	17	3	NaN	NaN	NaN	0.0043847	1	17578	55.754	50.258	1	101700			18148	2281	15304	15757	18148	18148		
SSNVLSEDQDSYLCNVTLFR	20	Unmodified	_SSNVLSEDQDSYLCNVTLFR_			0	0	0	P21283	P21283	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.04717	2346.07979	0.407	0.00047784	1.6733	0.0019645	2.0803	0.0024424	1174.55013536324	16.236	0.088668	16.236	16.191	16.28	0	63	40	1.28111162701928	0.0257225849725	1.28111162701928	516.13419890892	0	10.3631139618469						239	11	4	NaN	NaN	NaN	6.6823E-08	1	36010	96.453	95.51	1	43245			18149	790	15305	15758	18149	18149		
SSPDMLYQYLK	11	Unmodified	_SSPDMLYQYLK_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.828846	1343.64314	0.80041	0.00053854	0.6049	0.00040699	1.4053	0.00094553	672.829108727229	13.646	0.11527	13.646	13.584	13.7	0	492	28	0.995464410099171	0.0181567430371361	0.995464410099171	402.809949803452	0	7.34703991140617						273	14	4	NaN	NaN	NaN	0.0026416	1	13705	39.039	33.173	1	72603			18150	2909	15306	15759	18150	18150		
SSPEPVALTESETEYVIR	18	Unmodified	_SSPEPVALTESETEYVIR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.99948	2005.98442	2.0352	0.0020434	-1.4044	-0.00141	0.63083	0.00063335	1004.49938887767	13.496	0.16849	13.496	13.416	13.584	0	165	88	1.21370334790578	0.0576888049432616	1.21370334790578	489.464717367948	0	23.2648568165935						957	20	5	NaN	NaN	NaN	4.261E-14	1	31736	113.34	97.81	1	268870			18151	3452	15307	15760	18151	18151		
SSPEVSSINQEALVLTAK	18	Unmodified	_SSPEVSSINQEALVLTAK_			0	0	0	Q9NRG0	Q9NRG0	Q9NRG0	CHRAC1	Chromatin accessibility complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.999288	1871.98402	1.9812	0.0018563	-1.2345	-0.0011568	0.74663	0.0006996	936.997767095709	12.671	0.18622	12.671	12.635	12.822	0	231	64	1.16991841121525	0.0418550311112162	1.16991841121525	472.039073184866	0	16.8876819994135						662	22	4	NaN	NaN	NaN	1.0466E-10	1	28989	111.98	85.513	1	134770			18152	3018	15308	15761	18152	18152		
SSPGQTPEEGAQALAEFAALHGPALR	26	Unmodified	_SSPGQTPEEGAQALAEFAALHGPALR_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	869.105019	2604.29323	1.7026	0.0014798	1.7937	0.0015589	3.4963	0.0030387	869.44073449114	16.218	0.29263	16.218	16.076	16.369	0	303	61	1.12200181823275	0.0399909592124241	1.12200181823275	677.650572037411	0	24.1531661947828						447	34	2	NaN	NaN	NaN	0.002576	1	37256	42.028	40.602	1	253890			18153	1733	15309	15762	18153	18153		
SSPPSIAPLALDSADLSEEK	20	Unmodified	_SSPPSIAPLALDSADLSEEK_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.01259	2026.01063	1.8031	0.0018284	-2.0836	-0.0021128	-0.28054	-0.00028447	1014.0127787595	14.24	0.16846	14.24	14.143	14.311	0	192	37	1.1958073123591	0.0238728485495119	1.1958073123591	482.214808842363	0	9.62683618075135						368	20	4	NaN	NaN	NaN	0.0021279	1	32079	33.456	22.484	1	72666			18154	1030	15310	15763	18154	18154		
SSPPSIAPLALDSADLSEEK	20	Unmodified	_SSPPSIAPLALDSADLSEEK_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.01259	2026.01063	1.3608	0.0013799	0.098849	0.00010023	1.4597	0.0014801	1014.01276178086	14.24	0.088639	14.24	14.205	14.294	0	132	61	1.23554629282893	0.0396954012636659	1.23554629282893	498.239728421298	0	16.007353233119						359	11	3	NaN	NaN	NaN	0.012471	1	32080	30.027	24.124	1	66528			18155	1030	15310	15763	18155	18155		
SSPQFGVTLLTYELLQR	17	Unmodified	_SSPQFGVTLLTYELLQR_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.528015	1951.04148	1.1535	0.0011265	-7.8176	-0.0076341	-6.664	-0.0065076	977.021880654008	19.667	0.088676	19.667	19.605	19.694	0	192	22	1.1958073123591	0.0139248709632032	1.1958073123591	482.340911570934	0	5.61673681410144						139	11	3	NaN	NaN	NaN	0.0030823	1	30739	48.363	39.996	1	27110			18156	3248	15311	15764	18156	18156		
SSPSGPSNPSNPSVEEK	17	Unmodified	_SSPSGPSNPSNPSVEEK_			0	0	0	Q8WY22	Q8WY22	Q8WY22	BRI3BP	BRI3-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.392113	1698.76967	2.7852	0.0023685	-1.0677	-0.00090799	1.7175	0.0014605	850.391107658307	3.51	0.11528	3.51	3.4657	3.581	0	411	28	1.04982941439551	0.0180891625147663	1.04982941439551	423.903091409282	0	7.30409322302103						225	14	3	NaN	NaN	NaN	5.2806E-07	1	24454	95.345	79.058	1	48340			18157	2399	15312	15765	18157	18157		
SSPVVNDGVVR	11	Unmodified	_SSPVVNDGVVR_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.80402	1127.59349	1.8703	0.0010564	-1.6536	-0.00093399	0.21669	0.00012239	564.803094838791	5.0263	0.12412	5.0263	4.9819	5.1061	0	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	360.912022679987	0	9.88539236632306						214	15	2	NaN	NaN	NaN	0.0036397	1	7460	55.235	31.113	1	141370			18158	1600	15313	15766	18158	18158		
SSPYPTDVAR	10	Unmodified	_SSPYPTDVAR_			0	0	0	Q02218;Q9ULD0	Q02218	Q02218	OGDH;OGDHL	2-oxoglutarate dehydrogenase, mitochondrial;2-oxoglutarate dehydrogenase-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.769645	1091.52474	0.97538	0.00053331	-0.37432	-0.00020467	0.60105	0.00032864	546.769148401259	4.911	0.204	4.911	4.7425	4.9465	0	663	34	0.880024865079826	0.0223736873989809	0.880024865079826	356.934037338871	0	9.07466469456142						275	24	3	NaN	NaN	NaN	0.052154	1	6489	28.096	12.598	1	73876			18159	1526	15314	15767	18159	18159		
SSQVAIEALSAMPTVR	16	Unmodified	_SSQVAIEALSAMPTVR_			0	0	0	Q03518	Q03518	Q03518	TAP1	Antigen peptide transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.440354	1658.86616	2.0221	0.0016792	0.18388	0.0001527	2.206	0.001832	830.440434792484	14.152	0.11526	14.152	14.099	14.214	-1.7764E-15	186	37	1.1997861197946	0.0238728485495119	1.1997861197946	484.547321059739	0	9.64132241562453						208	14	2	NaN	NaN	NaN	5.6478E-07	1	23296	103.23	82.895	1	80213			18160	1538	15315	15768	18160	18160		
SSSAEGHTDAVLDLSWNK	18	Unmodified	_SSSAEGHTDAVLDLSWNK_			0	0	0	Q13610	Q13610	Q13610	PWP1	Periodic tryptophan protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.637671	1915.89118	1.2028	0.00076938	2.1342	0.0013651	3.337	0.0021345	639.973468558125	10.897	0.12416	10.897	10.862	10.986	0	594	34	0.926715457081489	0.0222962488144068	0.926715457081489	560.770498600052	0	13.4918204601246						235	15	3	NaN	NaN	NaN	0.001125	1	29965	30.027	27.312	1	45837			18161	1691	15316	15769	18161	18161		
SSSGLLEWESK	11	Unmodified	_SSSGLLEWESK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.801143	1221.58773	1.3187	0.00080676	0.61542	0.00037651	1.9341	0.0011833	611.801373296143	10.321	0.35471	10.321	10.188	10.543	0	600	85	0.922661313351899	0.0567502011556932	0.922661313351899	373.730069180825	0	22.9870444300875						1364	41	5	NaN	NaN	NaN	1.5342E-07	1	10060	147.78	121.32	1	994500			18162	704	15317	15770	18162	18162		
SSSPAPADIAQTVQEDLR	18	Unmodified	_SSSPAPADIAQTVQEDLR_			0	0	0	Q13283	Q13283	Q13283	G3BP1	Ras GTPase-activating protein-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.968519	1883.92248	2.3062	0.0021747	0.44508	0.00041969	2.7513	0.0025944	943.470632247147	14.462	0.25714	14.462	14.338	14.595	0	243	61	1.16194328902838	0.0398920741841871	1.16194328902838	468.79940689598	0	16.0949169326804						1179	30	5	NaN	NaN	NaN	1.5961E-07	1	29240	115.24	103.07	1	458690			18163	1649	15318	15771	18163	18163		
SSSPELVTHLK	11	Unmodified	_SSSPELVTHLK_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.327328	1196.6401	0.88242	0.00052886	0.98623	0.00059108	1.8686	0.0011199	599.328003167907	5.443	0.15073	5.443	5.4076	5.5583	0	549	34	0.957085760909907	0.0222499784868294	0.957085760909907	387.76420281209	0	9.01459986441455						257	18	3	NaN	NaN	NaN	0.0036397	1	9361	40.386	32.385	1	80787			18164	1573	15319	15772	18164	18164		
SSSQVPPILQETDK	14	Unmodified	_SSSQVPPILQETDK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.896303	1527.77805	1.9334	0.0014789	-0.44089	-0.00033724	1.4925	0.0011416	764.896349233198	9.6558	0.30147	9.6558	9.4608	9.7622	0	453	49	1.02166545906632	0.032209607794301	1.02166545906632	412.904384814425	0	13.0174590649017						654	35	3	NaN	NaN	NaN	0.054907	1	19358	39.702	25.708	1	173030			18165	2165	15320	15773	18165	18165		
SSSSGHYVSWVK	12	Unmodified	_SSSSGHYVSWVK_			0	0	0	P54578	P54578	P54578	USP14	Ubiquitin carboxyl-terminal hydrolase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.320034	1322.62551	1.0827	0.00071711	3.1141	0.0020625	4.1968	0.0027797	662.320803366943	5.4785	0.11524	5.4785	5.4342	5.5494	0	501	22	0.98941132619024	0.0141258159516562	0.98941132619024	400.425354862361	0	5.71686892542681						126	14	3	NaN	NaN	NaN	0.019793	1	13062	27.589	13.791	1	24458			18166	1252	15321	15774	18166	18166		
SSSSLLASPGHISVK	15	Unmodified	_SSSSLLASPGHISVK_			0	0	0	A0FGR8	A0FGR8	A0FGR8	ESYT2	Extended synaptotagmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.401555	1468.78856	1.5691	0.0011539	0.78379	0.0005764	2.3529	0.0017303	735.402634659181	7.6068	0.1064	7.6068	7.5801	7.6865	0	378	28	1.07192009927972	0.0180617378392283	1.07192009927972	433.370903763913	0	7.30225289757396						173	13	3	NaN	NaN	NaN	3.1483E-06	1	17557	117.21	93.372	1	48553			18167	4	15322	15775	18167	18167		
SSSSQVVGPVQEEEYVAEK	19	Unmodified	_SSSSQVVGPVQEEEYVAEK_			0	0	0	Q92667	Q92667	Q92667	AKAP1	A-kinase anchor protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.49202	2050.96949	1.9954	0.0020483	-0.71123	-0.00073008	1.2842	0.0013182	1026.99268884065	9.0706	0.088689	9.0706	9.0174	9.106	0	198	22	1.1918274123006	0.013932520112734	1.1918274123006	480.570084738288	0	5.61788754151075						125	11	2	NaN	NaN	NaN	3.4635E-05	1	32553	48.363	44.205	1	27606			18168	2426	15323	15776	18168	18168		
SSSTALTTNVTEQTEK	16	Unmodified	_SSSTALTTNVTEQTEK_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.915421	1695.81629	2.9911	0.0025392	-0.36039	-0.00030594	2.6307	0.0022333	848.9155341832	5.7179	0.097528	5.7179	5.6736	5.7711	0	354	34	1.08796502040166	0.0220480903949298	1.08796502040166	439.307783020343	0	8.90276574117513						265	12	4	NaN	NaN	NaN	5.6254E-07	1	24365	108.91	102.17	1	57714			18169	2401	15324	15777	18169	18169		
SSTAISSIAADGEFLHELEEK	21	Unmodified	_SSTAISSIAADGEFLHELEEK_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.365617	2233.07502	0.72612	0.00054123	0.164	0.00012224	0.89012	0.00066346	745.700214452463	15.775	0.13301	15.775	15.73	15.863	0	495	46	0.993446994398923	0.0302570607134584	0.993446994398923	600.537059922101	0	18.2903430028883						435	16	5	NaN	NaN	NaN	1.0658E-07	1	35016	58.045	51.84	1	143110			18170	352	15325	15778	18170	18170		
SSTETCYSAIPK	12	Unmodified	_SSTETCYSAIPK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.311017	1342.60748	2.2339	0.0015019	-0.1784	-0.00011994	2.0555	0.0013819	672.310972842466	5.6026	0.30152	5.6026	5.5051	5.8066	0	522	58	0.975277694896658	0.0383998931056473	0.975277694896658	394.644593785594	0	15.5384566830416						660	35	4	NaN	NaN	NaN	0.0058009	1	13681	54.584	41.988	1	192880			18171	326	15326	15779	18171	18171		
SSTGPEPPAPTPLLAER	17	Unmodified	_SSTGPEPPAPTPLLAER_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.449234	1718.88391	3.1953	0.0027494	-1.8366	-0.0015803	1.3588	0.0011692	860.447870214126	10.392	0.21284	10.392	10.294	10.507	0	336	49	1.09998710857178	0.0320544938914422	1.09998710857178	444.11384717562	0	12.9418285818637						608	25	4	NaN	NaN	NaN	0.00012079	1	25032	77.696	68.89	1	164130			18172	3318	15327	15780	18172	18172		
SSTTSTWELLDQR	13	Unmodified	_SSTTSTWELLDQR_			0	0	0	Q9HA77	Q9HA77	Q9HA77	CARS2	Probable cysteine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.370452	1522.72635	0.75851	0.00057826	0.23399	0.00017839	0.9925	0.00075665	762.871984966047	11.953	0.13303	11.953	11.882	12.015	0	423	43	1.04178812298108	0.028152295306344	1.04178812298108	421.049465505563	0	11.3780418782009						337	16	3	NaN	NaN	NaN	0.00013889	1	19198	69.276	55.477	1	105510			18173	2943	15328	15781	18173	18173		
SSTVATLQGTPDHGDPR	17	Unmodified	_SSTVATLQGTPDHGDPR_			0	0	0	Q8IVT2	Q8IVT2	Q8IVT2	MISP	Mitotic interactor and substrate of PLK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.921372	1737.82819	2.7145	0.0023614	-0.99712	-0.00086742	1.7173	0.0014939	869.920465216213	4.6361	0.070956	4.6361	4.6095	4.6805	0	255	31	1.15396378101328	0.0199570013831343	1.15396378101328	465.866002987998	0	8.0568286621812						123	9	3	NaN	NaN	NaN	1.5061E-06	1	25538	75.012	68.265	1	23451			18174	2199	15329	15782	18174	18174		
SSVAVLTQESFAEHR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SSVAVLTQESFAEHR_			1	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.923383	1701.83221	1.6836	0.0014343	1.5564	0.001326	3.24	0.0027602	851.92466472917	13.034	0.28375	13.034	12.955	13.238	0	246	52	1.1599488233373	0.0339152510524858	1.1599488233373	468.360587223348	0	13.6941963120992						828	33	5	NaN	NaN	NaN	6.0015E-44	1	24553	220.81	200.47	1	340120			18175	1498	15330	15783	18175	18175		
SSVLENFVGR	10	Unmodified	_SSVLENFVGR_			0	0	0	P50570;Q9UQ16;Q05193	P50570	P50570	DNM2;DNM3;DNM1	Dynamin-2;Dynamin-3;Dynamin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.293288	1106.57202	-0.3877	-0.0002149	-3.3172	-0.0018387	-3.7049	-0.0020536	554.290556183144	11.58	0.15967	11.58	11.527	11.687	0	672	28	0.873923798053065	0.0183057433537801	0.873923798053065	354.399394636502	0	7.42346687137234						240	19	2	NaN	NaN	NaN	0.0028838	1	6895	88.921	71.525	1	117540			18176	1167	15331	15784	18176	18176		
SSVLIAQQTDTSDPEK	16	Unmodified	_SSVLIAQQTDTSDPEK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.925788	1717.83702	2.8889	0.0024842	-2.1821	-0.0018764	0.70683	0.00060782	859.924093816453	6.5338	0.17739	6.5338	6.4806	6.658	0	369	55	1.07793901817685	0.0360961081802142	1.07793901817685	435.214172778472	0	14.5736795841607						622	21	4	NaN	NaN	NaN	1.5934E-17	1	24992	180.17	154.56	1	199780			18177	1075	15332	15785	18177	18177		
SSVLIAQQTDTSDPEK	16	Unmodified	_SSVLIAQQTDTSDPEK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.925788	1717.83702	2.4233	0.0020839	-0.65202	-0.00056069	1.7713	0.0015232	859.925322612831	6.5338	0.053198	6.5338	6.5072	6.5604	0	309	31	1.11800162319566	0.020009239153943	1.11800162319566	451.38930629029	0	8.07866142025642						75	7	2	NaN	NaN	NaN	0.0017361	1	24993	51.569	46.181	1	12470			18178	1075	15332	15785	18178	18178		
SSVNCPFSSQDMK	13	Unmodified	_SSVNCPFSSQDMK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.818683	1485.62281	2.0486	0.0015238	0.58116	0.00043228	2.6298	0.0019561	743.818646927699	6.7555	0.32799	6.7555	6.658	6.986	0	462	55	1.01562323939346	0.036265853684099	1.01562323939346	410.566995106774	0	14.660517792951						1188	38	6	NaN	NaN	NaN	2.8601E-11	1	18066	189.56	138.72	1	572430			18179	1575	15333	15786	18179	18179		
SSVQEECVSTISSSK	15	Unmodified	_SSVQEECVSTISSSK_			0	0	0	Q7L0Y3	Q7L0Y3	Q7L0Y3	TRMT10C	Mitochondrial ribonuclease P protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.377617	1626.74068	2.4033	0.0019572	-2.0118	-0.0016383	0.39152	0.00031885	814.376351858021	5.3189	0.13306	5.3189	5.2923	5.4254	0	414	43	1.04781950764076	0.0281406425229616	1.04781950764076	423.243094390103	0	11.3667788514082						414	16	4	NaN	NaN	NaN	3.025E-08	1	22372	85.081	67.35	1	112430			18180	2111	15334	15787	18180	18180		
SSVVGGFVSHYLLEK	15	Unmodified	_SSVVGGFVSHYLLEK_			0	0	0	Q9UM54	Q9UM54	Q9UM54	MYO6	Unconventional myosin-VI	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.432855	1620.85116	2.0369	0.0016528	1.2532	0.0010169	3.2901	0.0026697	811.433954674104	14.356	0.088648	14.356	14.32	14.409	0	258	28	1.15196821829984	0.017960066118488	1.15196821829984	465.325883958705	0	7.2547866423576						198	11	3	NaN	NaN	NaN	0.0040985	1	22223	75.5	40.171	1	50370			18181	3286	15335	15788	18181	18181		
SSYDVFQLEFNDGAYNIK	18	Unmodified	_SSYDVFQLEFNDGAYNIK_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.49183	2108.9691	1.1292	0.0011919	0.57773	0.00060979	1.7069	0.0018017	1055.99393631615	16.821	0.1685	16.821	16.768	16.936	0	171	67	1.20972836110953	0.0437128828362645	1.20972836110953	487.697908304051	0	17.6227012695919						798	20	6	NaN	NaN	NaN	1.1537E-19	1	33454	203.76	177.3	1	285010			18182	1898	15336	15789	18182	18182		
SSYPGQITGNMICVGFLEGGK	21	Unmodified	_SSYPGQITGNMICVGFLEGGK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	739.022251	2214.04492	0.40216	0.0002972	-1.3121	-0.00096968	-0.90995	-0.00067247	739.356189714762	16.555	0.15073	16.555	16.493	16.644	0	531	34	0.969216233931596	0.0222315106769172	0.969216233931596	585.92072115095	0	13.4396250414163						557	18	5	NaN	NaN	NaN	0.00033024	1	34836	71.935	66.32	1	165900		+	18183	24	15337	15790	18183	18183		
SSYPGQITGNMICVGFLEGGK	21	Unmodified	_SSYPGQITGNMICVGFLEGGK_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1108.02974	2214.04492	1.392	0.0015423	-0.13488	-0.00014945	1.2571	0.0013929	1108.53155745669	16.555	0.73598	16.555	16.253	16.989	0	108	157	1.25141139212444	0.103236631864944	1.25141139212444	504.345616962818	0	41.6065756782809						4341	84	7	NaN	NaN	NaN	1.9856E-22	1	34837	160.04	133.12	1	2916600		+	18184	24	15337	15790	18184	18184		
SSYPGQITGNMICVGFLEGGK	21	Oxidation (M)	_SSYPGQITGNM(Oxidation (M))ICVGFLEGGK_	SSYPGQITGNM(1)ICVGFLEGGK	SSYPGQITGNM(81)ICVGFLEGGK	0	1	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1116.0272	2230.03984	1.5603	0.0017413	-0.70346	-0.00078508	0.85685	0.00095626	1116.52813377622	14.657	0.26606	14.657	14.586	14.852	0	114	112	1.24744674793813	0.0733812254315218	1.24744674793813	502.725294909303	0	29.5728841786979						1878	31	6	NaN	NaN	NaN	2.4389E-05	1	34985	81.373	50.982	1	623370		+	18185	24	15337	15791	18185	18185	2	
SSYYMIGEQK	10	Unmodified	_SSYYMIGEQK_			0	0	0	P40261	P40261	P40261	NNMT	Nicotinamide N-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.278989	1204.54342	1.2818	0.00077326	1.5734	0.00094919	2.8551	0.0017224	603.279873524166	7.1811	0.13299	7.1811	7.1368	7.2698	0	579	31	0.936845902828289	0.0202538779292779	0.936845902828289	379.535612231615	0	8.2052639999236						340	16	4	NaN	NaN	NaN	0.00052964	1	9591	96.311	65.718	1	185120			18186	1017	15338	15792	18186	18186		
STAALSGEAASCSPIIMPYK	20	Unmodified	_STAALSGEAASCSPIIMPYK_			0	0	0	Q14244	Q14244	Q14244	MAP7	Ensconsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.50028	2052.98601	1.6829	0.0017292	-1.002	-0.0010296	0.68088	0.00069961	1027.49979918779	12.352	0.13301	12.352	12.29	12.423	0	171	79	1.20972836110953	0.0516890528777489	1.20972836110953	487.784906114579	0	20.8419845443645						397	16	2	NaN	NaN	NaN	1.9387E-07	1	32578	109.47	107.23	1	125580			18187	1741	15339	15793	18187	18187		
STACQMLVCYAK	12	Unmodified	_STACQMLVCYAK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.32509	1430.63563	1.9139	0.0013709	2.5342	0.0018153	4.448	0.0031862	716.327282083446	9.6913	0.11527	9.6913	9.647	9.7622	0	474	31	1.00756305028564	0.0201588292942909	1.00756305028564	407.453091339495	0	8.15212240208234						238	14	4	NaN	NaN	NaN	8.9383E-05	1	16399	83.358	64.034	1	81099			18188	74	15340	15794	18188	18188		
STADALDDENTFK	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STADALDDENTFK_			1	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.825543	1467.63653	1.5175	0.0011151	1.905	0.0013998	3.4224	0.0025149	734.826515845912	10.56	0.097546	10.56	10.516	10.613	0	384	28	1.06790610341098	0.0180642284135071	1.06790610341098	431.751227382795	0	7.30331324480994						180	12	3	NaN	NaN	NaN	0.0093506	1	17498	51.531	43.974	1	37911			18189	1157	15341	15795	18189	18189		
STAGDTHLGGEDFDNR	16	Unmodified	_STAGDTHLGGEDFDNR_			0	0	0	P11142;P54652	P11142	P11142	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.366429	1690.71831	1.8409	0.0015581	-3.326	-0.002815	-1.4851	-0.001257	846.863610579158	5.4785	0.15073	5.4785	5.4076	5.5583	0	387	25	1.06589869032374	0.0160604132229905	1.06589869032374	430.408182529128	0	6.48516911478202						191	18	3	NaN	NaN	NaN	0.0050016	1	24218	39.166	36.495	1	36043			18190	640	15342	15796	18190	18190		
STAGDTHLGGEDFDNR	16	Unmodified	_STAGDTHLGGEDFDNR_			0	0	0	P11142;P54652	P11142	P11142	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.366429	1690.71831	3.5989	0.003046	-1.2014	-0.0010169	2.3974	0.0020291	846.365517946911	5.1238	0.47883	5.1238	5.0529	5.5317	0	399	196	1.0578662689527	0.130861185994567	1.0578662689527	427.164696267985	0	52.8415362217559						2937	55	6	NaN	NaN	NaN	1.6673E-17	1	24219	187.47	182.95	1	2362600			18191	640	15342	15796	18191	18191		
STAGDTHLGGEDFDNR	16	Unmodified	_STAGDTHLGGEDFDNR_			0	0	0	P11142;P54652	P11142	P11142	HSPA8;HSPA2	Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.580045	1690.71831	0.83245	0.00046998	1.6892	0.00095367	2.5216	0.0014237	564.581042675525	5.1238	0.43448	5.1238	5.044	5.4785	0	765	103	0.810730346695089	0.0694391676468086	0.810730346695089	491.055024426146	0	42.0589315595942						1907	50	6	NaN	NaN	NaN	1.0334E-06	1	24220	130.71	120.69	1	3072600			18192	640	15342	15796	18192	18192		
STAISLFYELSENDLNFIK	19	Unmodified	_STAISLFYELSENDLNFIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.375565	2203.10487	0.12026	8.8437E-05	-1.9701	-0.0014487	-1.8498	-0.0013603	735.708635418403	20.075	0.035463	20.075	20.075	20.111	0	498	31	0.991429299781895	0.0201783433575858	0.991429299781895	599.367740649082	0	12.1988003289173						117	5	5	NaN	NaN	NaN	6.7427E-06	1	34717	94.507	88.12	1	54238			18193	679	15343	15797	18193	18193		
STAISLFYELSENDLNFIK	19	Unmodified	_STAISLFYELSENDLNFIK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1102.55971	2203.10487	0.43741	0.00048227	0.9513	0.0010489	1.3887	0.0015311	1103.06214843415	20.075	0.10639	20.075	20.031	20.137	0	99	76	1.25735632164274	0.0495071946217644	1.25735632164274	506.757239110484	0	19.9530784001253						283	13	5	NaN	NaN	NaN	4.4777E-08	1	34718	100.69	98.451	1	103620			18194	679	15343	15797	18194	18194		
STAMDTLSSLVFQLGK	16	Unmodified	_STAMDTLSSLVFQLGK_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.442563	1696.87057	0.98212	0.00083426	-0.8144	-0.00069178	0.16772	0.00014247	849.442676142208	19.96	0.017751	19.96	19.96	19.978	0	330	28	1.10399226369747	0.01801947676188	1.10399226369747	445.777156307361	0	7.27602119434653						74	3	4	NaN	NaN	NaN	2.7282E-05	1	24412	90.689	88.388	1	14633			18195	1049	15344	15798	18195	18195		
STAPETAIECTQAPAPASEDEK	22	Unmodified	_STAPETAIECTQAPAPASEDEK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1152.02082	2302.02709	1.6754	0.0019301	-1.3737	-0.0015825	0.30171	0.00034758	1152.52070299053	7.2432	0.097523	7.2432	7.19	7.2875	0	120	76	1.2434810169581	0.0496022599376962	1.2434810169581	501.03004955669	0	19.986008966589						322	12	3	NaN	NaN	NaN	0.00038065	1	35659	43.904	42.535	1	57237			18196	1776	15345	15799	18196	18196		
STAYEDYYYHPPPR	14	Unmodified	_STAYEDYYYHPPPR_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.891552	1757.76855	2.9544	0.0025996	-1.66	-0.0014607	1.2944	0.0011389	879.890136598016	7.1634	0.32818	7.1634	7.0303	7.3585	-8.8818E-16	294	37	1.12800004657306	0.0239912663055373	1.12800004657306	455.343317527451	0	9.6846297342243						811	38	4	NaN	NaN	NaN	6.3957E-05	1	26078	87.942	85.463	1	180800			18197	196	15346	15800	18197	18197		
STAYEDYYYHPPPR	14	Unmodified	_STAYEDYYYHPPPR_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.930126	1757.76855	1.5024	0.00088182	0.88399	0.00051884	2.3864	0.0014007	587.265094397334	7.1457	0.41684	7.1457	6.986	7.4028	0	606	40	0.918606045818476	0.0263610708448411	0.918606045818476	556.22237249294	0	15.9618123933723						1220	48	5	NaN	NaN	NaN	0.0023398	1	26079	51.531	47.285	1	462100			18198	196	15346	15800	18198	18198		
STDNAFENPFFK	12	Unmodified	_STDNAFENPFFK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.825149	1415.63574	1.2795	0.00090693	-0.066302	-4.6997E-05	1.2132	0.00085994	708.824972905065	14.099	0.28374	14.099	14.019	14.302	0	489	52	0.997481546940468	0.0342960787015847	0.997481546940468	403.417120909692	0	13.8705576767038						716	33	4	NaN	NaN	NaN	7.3347E-09	1	15949	144.47	133.12	1	312900			18199	1489	15347	15801	18199	18199		
STDTGVSLPSYEEDQGSK	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STDTGVSLPSYEEDQGSK_			1	0	0	Q9Y241	Q9Y241	Q9Y241	HIGD1A	HIG1 domain family member 1A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.431632	1940.84871	3.1766	0.0030859	2.4493	0.0023794	5.6259	0.0054652	971.934469976967	10.942	0.27488	10.942	10.826	11.101	0	270	79	1.14398322290989	0.05189537397897	1.14398322290989	461.454225638061	0	20.9332961656112						1010	32	4	NaN	NaN	NaN	9.0932E-07	1	30522	81.48	79.343	1	319730			18200	3327	15348	15802	18200	18200		
STEEATSSALPEK	13	Unmodified	_STEEATSSALPEK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.325179	1348.6358	2.6175	0.0017677	-2.7553	-0.0018608	-0.13783	-9.3079E-05	675.323827731959	4.042	0.23055	4.042	3.9179	4.1484	0	543	37	0.961130371139249	0.0242710246218105	0.961130371139249	388.902198038506	0	9.82078509586637						375	27	3	NaN	NaN	NaN	0.0058546	1	13850	42.061	38.716	1	81322			18201	978	15349	15803	18201	18201		
STELDSNWNWFQLR	14	Unmodified	_STELDSNWNWFQLR_			0	0	0	Q8N6H7	Q8N6H7	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.42355	1794.83255	0.98149	0.00088179	0.80729	0.00072529	1.7888	0.0016071	898.424036655704	17.876	0.035468	17.876	17.858	17.894	0	357	22	1.08596037261705	0.0140344692032623	1.08596037261705	438.302172374928	0	5.6644224734415						55	5	2	NaN	NaN	NaN	0.00019821	1	27096	53.028	47.125	1	9278.6			18202	2263	15350	15804	18202	18202		
STELLIR	7	Unmodified	_STELLIR_			0	0	0	Q5TEC6	Q5TEC6	Q5TEC6	HIST2H3PS2	Histone H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.25036	830.486168	-1.0526	-0.00043815	-0.25791	-0.00010735	-1.3105	-0.00054551	416.250539160322	7.1191	0.4789	7.1191	7.0569	7.5358	0	813	46	0.778007628350577	0.0307095969464217	0.778007628350577	316.789605303895	0	12.504351809922						1083	55	4	NaN	NaN	NaN	0.0046059	1	1325	96.51	31.963	1	913890			18203	2000	15351	15805	18203	18203		
STESLQANVQR	11	Unmodified	_STESLQANVQR_			0	0	0	P26373	P26373	P26373	RPL13	60S ribosomal protein L13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.815116	1231.61568	2.7512	0.001697	-1.5136	-0.00093363	1.2375	0.00076333	616.814596686243	4.0243	0.28378	4.0243	3.9888	4.2726	0	600	49	0.922661313351899	0.0324331596454394	0.922661313351899	373.696078762571	0	13.1360710652866						646	33	4	NaN	NaN	NaN	3.4996E-08	1	10360	154.35	146.71	1	461240			18204	851	15352	15806	18204	18204		
STFFNVLTNSQASAENFPFCTIDPNESR	28	Unmodified	_STFFNVLTNSQASAENFPFCTIDPNESR_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1065.15589	3192.44584	0.75167	0.00080065	0.86235	0.00091854	1.614	0.0017192	1065.49098115407	19.49	0.15075	19.49	19.437	19.587	0	372	19	1.07593298845566	0.0120370084609909	1.07593298845566	649.190570388275	0	7.26282442531613						111	18	2	NaN	NaN	NaN	0.047338	1	38454	18.481	18.263	1	27972			18205	3044	15353	15807	18205	18205		
STFVLDEFK	9	Unmodified	_STFVLDEFK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.279315	1084.54408	1.7924	0.00097377	-1.5022	-0.00081609	0.29023	0.00015768	543.278410558436	12.91	0.28378	12.91	12.839	13.123	0	630	85	0.902373728295776	0.0568762246107581	0.902373728295776	366.028003089504	0	23.0705862379919						1496	33	5	NaN	NaN	NaN	0.0012821	1	6321	81.642	69.576	1	1720300			18206	859	15354	15808	18206	18206		
STFVLDEFKR	10	Unmodified	_STFVLDEFKR_			0	0	1	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.32987	1240.64519	1.1091	0.00068913	1.2332	0.00076622	2.3423	0.0014554	621.330742689276	10.312	0.11525	10.312	10.259	10.374	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	397.428670352245	0	8.17762054159641						202	14	3	NaN	NaN	NaN	0.0033198	1	10638	50.834	43.684	1	46271			18207	859	15355	15809	18207	18207		
STFVLSNLAEVVER	14	Unmodified	_STFVLSNLAEVVER_			0	0	0	Q8NEZ5	Q8NEZ5	Q8NEZ5	FBXO22	F-box only protein 22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.422487	1562.83042	0.99265	0.00077667	0.83702	0.0006549	1.8297	0.0014316	782.422837652319	17.397	0.18622	17.397	17.344	17.53	0	372	37	1.07593298845566	0.024074020010092	1.07593298845566	434.748924318331	0	9.72751501785262						466	22	4	NaN	NaN	NaN	8.7249E-12	1	20449	143.22	119.38	1	162810			18208	2314	15356	15810	18208	18208		
STGDIAGTVVPETNK	15	Unmodified	_STGDIAGTVVPETNK_			0	0	0	Q9UDY2	Q9UDY2	Q9UDY2	TJP2	Tight junction protein ZO-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.880652	1487.74675	2.1107	0.0015722	-3.0056	-0.0022388	-0.89496	-0.00066664	744.878730982519	7.3762	0.22165	7.3762	7.3408	7.5624	0	390	61	1.06389100039157	0.0401842911414492	1.06389100039157	430.073647060954	0	16.2443376618483						536	26	4	NaN	NaN	NaN	1.0545E-08	1	18168	148.76	105.82	1	154340			18209	3196	15357	15811	18209	18209		
STGEAFVQFASK	12	Unmodified	_STGEAFVQFASK_			0	0	0	P31942	P31942	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.31696	1270.61937	1.6666	0.0010605	0.58196	0.00037031	2.2485	0.0014308	636.317215935337	9.6736	0.2926	9.6736	9.576	9.8686	0	567	49	0.944945209309785	0.0323837789841732	0.944945209309785	382.591244388496	0	13.1116070831309						706	34	3	NaN	NaN	NaN	1.9926E-07	1	11524	148.9	134.14	1	287160			18210	930	15358	15812	18210	18210		
STGEAFVQFASQEIAEK	17	Unmodified	_STGEAFVQFASQEIAEK_			0	0	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.449431	1840.88431	1.3272	0.001223	-0.5996	-0.0005525	0.72763	0.00067047	921.950682577678	14.905	0.079802	14.905	14.879	14.959	0	222	46	1.17589687683038	0.0298718109844258	1.17589687683038	474.510222226713	0	12.0541859986408						225	10	3	NaN	NaN	NaN	0.05261	1	28247	30.027	26.291	1	40527			18211	931;1278	15359	15813	18211	18211		
STGEAFVQFASQEIAEK	17	Unmodified	_STGEAFVQFASQEIAEK_			0	0	0	P31943;P55795	P31943;P55795	P31943	HNRNPH1;HNRNPH2	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.449431	1840.88431	2.3196	0.0021374	2.1958	0.0020233	4.5154	0.0041607	921.45170555852	15.047	0.39014	15.047	14.976	15.367	0	219	100	1.17788915118882	0.0657541709506795	1.17788915118882	475.314155692427	0	26.5338111121355						2221	45	6	NaN	NaN	NaN	9.9916E-45	1	28248	258.79	237.64	1	3450900			18212	931;1278	15359	15813	18212	18212		
STGEALVQGLMGAAVTLK	18	Unmodified	_STGEALVQGLMGAAVTLK_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.653717	1744.93932	-0.27039	-0.00015754	-0.39082	-0.00022771	-0.66121	-0.00038526	582.653479063531	18.461	0.053259	18.461	18.444	18.497	0	609	22	0.916577990479294	0.0141963881924577	0.916577990479294	555.026271045308	0	8.59650622491074						104	7	3	NaN	NaN	NaN	0.013807	1	25760	34.338	19.975	1	20741			18213	313	15360	15814	18213	18213		
STGEALVQGLMGAAVTLK	18	Unmodified	_STGEALVQGLMGAAVTLK_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.476937	1744.93932	0.87493	0.00076423	0.42767	0.00037356	1.3026	0.0011378	873.477418362211	18.461	0.062132	18.461	18.435	18.497	0	135	31	1.23356193185193	0.019847693635112	1.23356193185193	497.984456143966	0	8.01244158512156						159	8	3	NaN	NaN	NaN	1.1531E-06	1	25762	72.031	61.06	1	36207			18214	313	15360	15814	18214	18214		
STGLILDSGATHTTAIPVHDGYVLQQGIVK	30	Unmodified	_STGLILDSGATHTTAIPVHDGYVLQQGIVK_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	773.666017	3090.63496	1.4329	0.0011086	-1.5896	-0.0012298	-0.15672	-0.00012125	773.913926048378	13.451	0.11527	13.451	13.407	13.522	0	426	22	1.03977710643793	0.014077116606523	1.03977710643793	836.618439664539	0	11.3266345810125						191	14	5	NaN	NaN	NaN	0.00020821	1	38346	37.054	33.004	1	56164			18215	470	15361	15815	18215	18215		
STGLILDSGATHTTAIPVHDGYVLQQGIVK	30	Unmodified	_STGLILDSGATHTTAIPVHDGYVLQQGIVK_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1031.21893	3090.63496	1.7102	0.0017636	1.165	0.0012013	2.8751	0.0029649	1031.55382048657	13.451	0.062065	13.451	13.425	13.487	0	237	34	1.16593139812432	0.0219330958171067	1.16593139812432	703.593909841176	0	13.2357638414278						219	8	5	NaN	NaN	NaN	0.00031427	1	38347	32.37	32.283	1	40329			18216	470	15361	15815	18216	18216		
STGLILDSGATHTTAIPVHDGYVLQQGIVK	30	Unmodified	_STGLILDSGATHTTAIPVHDGYVLQQGIVK_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	773.666017	3090.63496	1.8875	0.0014603	1.506	0.0011651	3.3935	0.0026255	773.917311379152	13.451	0.12414	13.451	13.416	13.54	0	357	31	1.08596037261705	0.020047861495702	1.08596037261705	873.778095551206	0	16.1307748231861						315	15	6	NaN	NaN	NaN	0.00011012	1	38348	42.959	42.873	1	91676			18217	470	15361	15815	18217	18217		
STGNFLTLTQAIDK	14	Unmodified	_STGNFLTLTQAIDK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.901388	1507.78822	1.8665	0.001409	-1.6929	-0.001278	0.17357	0.00013103	754.900337583744	14.453	0.21282	14.453	14.382	14.595	0	420	52	1.04379886199097	0.0341778577956089	1.04379886199097	421.899783494558	0	13.8145684282227						749	25	4	NaN	NaN	NaN	6.2452E-17	1	18735	217.24	172.67	1	392130			18218	3161	15362	15816	18218	18218		
STGSFVGELMYK	12	Unmodified	_STGSFVGELMYK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.821021	1317.62749	0.88198	0.00058195	0.24922	0.00016444	1.1312	0.00074639	659.821289724503	12.662	0.17739	12.662	12.618	12.795	0	537	70	0.965173861991602	0.0465162659226231	0.965173861991602	390.631524340701	0	18.8263696102348						261	21	2	NaN	NaN	NaN	0.035373	1	12904	47.334	28.078	1	88743			18219	3248	15363	15817	18219	18219		
STGVFQDEELLFSHK	15	Unmodified	_STGVFQDEELLFSHK_			0	0	0	Q641Q2;Q9Y4E1	Q641Q2	Q641Q2	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.621181	1735.84172	-0.89966	-0.00052146	-0.76352	-0.00044255	-1.6632	-0.00096401	579.620628736321	13.309	0.10643	13.309	13.274	13.38	0	705	22	0.851531465363931	0.0142615450408974	0.851531465363931	515.659160071621	0	8.63631778300726						197	13	4	NaN	NaN	NaN	1.9469E-05	1	25493	95.656	85.913	1	60518			18220	2016	15364	15818	18220	18220		
STHSELLEDYYQSGR	15	Unmodified	_STHSELLEDYYQSGR_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.607712	1783.80131	0.0041023	2.4433E-06	1.017	0.00060574	1.0211	0.00060818	595.60836292722	8.077	0.071058	8.077	8.0414	8.1124	0	696	34	0.857641857947968	0.0224016640756647	0.857641857947968	519.248884382083	0	13.5628164271534						175	9	3	NaN	NaN	NaN	0.00012156	1	26782	75.474	75.474	1	39213			18221	876	15365	15819	18221	18221		
STHSELLEDYYQSGR	15	Unmodified	_STHSELLEDYYQSGR_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.90793	1783.80131	2.7196	0.0024283	-0.67983	-0.00060703	2.0397	0.0018213	893.409172420015	8.068	0.10653	8.068	8.0148	8.1213	0	321	40	1.10999792833052	0.0260209682813848	1.10999792833052	448.025165126006	0	10.5027660984377						311	13	4	NaN	NaN	NaN	0.0048975	1	26783	34.779	33.523	1	66988			18222	876	15365	15819	18222	18222		
STIGAYFLK	9	Unmodified	_STIGAYFLK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.279118	998.543683	-0.64679	-0.00032358	-1.2201	-0.00061041	-1.8669	-0.00093399	500.278418590166	11.651	0.23948	11.651	11.474	11.713	0	684	55	0.86578508874114	0.0366496414922302	0.86578508874114	351.565758597981	0	14.8821678510247						419	28	3	NaN	NaN	NaN	0.0094958	1	4256	47.349	22.498	1	93358			18223	2329	15366	15820	18223	18223		
STIIGESISR	10	Unmodified	_STIIGESISR_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.793121	1061.57169	0.37963	0.00020188	-1.8397	-0.00097831	-1.46	-0.00077643	531.792488470372	7.0392	0.26609	7.0392	6.9594	7.2255	0	660	40	0.882057989648486	0.0264306247374108	0.882057989648486	357.884475199208	0	10.7239097364846						349	31	3	NaN	NaN	NaN	0.069467	1	5772	16.652	8.4695	1	164790			18224	1250	15367	15821	18224	18224		
STIQNLQSFDPFADATK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STIQNLQSFDPFADATK_			1	0	0	O60739	O60739	O60739	EIF1B	Eukaryotic translation initiation factor 1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.967987	1923.92142	1.3329	0.0012835	0.47572	0.00045811	1.8086	0.0017416	962.969067450667	19.401	0.062115	19.401	19.366	19.428	0	237	52	1.16593139812432	0.0339012683335864	1.16593139812432	470.336953108965	0	13.6757782492176						301	8	4	NaN	NaN	NaN	0.0001021	1	30145	88.42	84.684	1	62397			18225	277	15368	15822	18225	18225		
STLDIVLANK	10	Unmodified	_STLDIVLANK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.313689	1072.61282	0.8157	0.00043829	-0.054708	-2.9395E-05	0.76099	0.00040889	537.313625995541	10.879	0.15076	10.879	10.835	10.986	0	657	40	0.884090832094921	0.026423290319909	0.884090832094921	358.661975187518	0	10.7195201590715						358	18	3	NaN	NaN	NaN	0.035671	1	6028	49.96	40.567	1	101140			18226	828	15369	15823	18226	18226		
STLEPVEK	8	Unmodified	_STLEPVEK_			0	0	0	P0DMV8;P0DMV9;P17066;P48741	P0DMV8;P17066	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA7	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.745108	901.475663	0.26505	0.00011973	1.9948	0.00090112	2.2598	0.0010209	451.745657677086	3.581	0.30145	3.581	3.5278	3.8292	0	774	85	0.804600385996946	0.057209040482862	0.804600385996946	327.198378910931	0	23.26459896219						698	35	2	NaN	NaN	NaN	0.044662	1	2348	31.952	20.303	1	657610			18227	618;734	15370	15824	18227	18227		
STLHNWMSEFK	11	Unmodified	_STLHNWMSEFK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.551933	1378.63397	-1.339	-0.00061668	-1.6305	-0.00075095	-2.9695	-0.0013676	460.551203362156	10.844	0.11525	10.844	10.791	10.906	0	828	28	0.767766820543916	0.0184411604837688	0.767766820543916	465.885992906064	0	11.1902183481101						246	14	4	NaN	NaN	NaN	0.049241	1	14758	15.616	13.817	1	63225			18228	251	15371	15825	18228	18228		
STLINSLFLTDLYSPEYPGPSHR	23	Unmodified	_STLINSLFLTDLYSPEYPGPSHR_			0	0	0	Q16181	Q16181	Q16181	SEPT7	Septin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	869.774499	2606.30167	1.1085	0.00096411	-1.5466	-0.0013452	-0.43817	-0.00038111	870.10738946427	18.452	0.11535	18.452	18.408	18.523	0	477	37	1.0055473068722	0.0241939396115666	1.0055473068722	607.313572103455	0	14.6122492580284						434	14	5	NaN	NaN	NaN	1.5337E-09	1	37262	96.26	96.082	1	135280			18229	1877	15372	15826	18229	18229		
STLINTLFK	9	Unmodified	_STLINTLFK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.8055	1035.59645	0.060469	3.1371E-05	-0.87434	-0.00045361	-0.81387	-0.00042224	518.805055688043	14.187	0.23054	14.187	14.134	14.365	0	699	49	0.85560534332665	0.0325774564338044	0.85560534332665	347.263119094763	0	13.2221581148513						467	27	4	NaN	NaN	NaN	0.0011738	1	5136	91.783	48.948	1	193020			18230	3215	15373	15827	18230	18230		
STLLLLLTGK	10	Unmodified	_STLLLLLTGK_			0	0	0	Q8NE71	Q8NE71	Q8NE71	ABCF1	ATP-binding cassette sub-family F member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.844625	1057.6747	-0.497	-0.00026333	-0.62818	-0.00033284	-1.1252	-0.00059617	529.844305440343	17.176	0.22168	17.176	17.122	17.344	0	651	34	0.888155670855968	0.0223550653870297	0.888155670855968	360.375534673333	0	9.07072814582591						555	26	4	NaN	NaN	NaN	0.00096967	1	5673	76.605	61.106	1	331860			18231	2308	15374	15828	18231	18231		
STLLLYQSPTTGLFPTK	17	Unmodified	_STLLLYQSPTTGLFPTK_			0	0	0	Q93100	Q93100	Q93100	PHKB	Phosphorylase b kinase regulatory subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.014209	1866.01387	0.92484	0.00086381	-1.3159	-0.0012291	-0.39109	-0.00036529	934.514262334907	16.236	0.1064	16.236	16.156	16.262	0	234	31	1.16792504164217	0.0199378074440928	1.16792504164217	471.245878708574	0	8.04470257380819						187	13	3	NaN	NaN	NaN	0.0039896	1	28854	37.146	36.094	1	37712			18232	2457	15375	15829	18232	18232		
STLMDTLFNTK	11	Unmodified	_STLMDTLFNTK_			0	0	0	Q14141;Q9NVA2	Q14141	Q14141	SEPT6;SEPT11	Septin-6;Septin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.821021	1269.62749	0.66799	0.00042472	-0.53595	-0.00034077	0.13204	8.3957E-05	635.820965470642	15.606	0.15954	15.606	15.553	15.712	0	558	37	0.951016745717027	0.0242777450705638	0.951016745717027	385.052738763003	0	9.82970307569337						361	19	3	NaN	NaN	NaN	4.0463E-05	1	11498	111.61	107.71	1	104710			18233	1725	15376	15830	18233	18233		
STLQQLLQLPQGEEEIPEQIANTETTEDVK	30	Unmodified	_STLQQLLQLPQGEEEIPEQIANTETTEDVK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1127.90177	3380.68349	1.359	0.0015328	-0.90672	-0.0010227	0.4523	0.00051015	1128.56783926471	18.594	0.04433	18.594	18.577	18.621	0	267	22	1.14597988355104	0.0139747033128397	1.14597988355104	691.287925180891	0	8.4299417440177						70	6	3	NaN	NaN	NaN	0.030333	1	38598	14.9	14.84	1	13065			18234	1794	15377	15831	18234	18234		
STLQTMESDIYTEVR	15	Oxidation (M)	_STLQTM(Oxidation (M))ESDIYTEVR_	STLQTM(1)ESDIYTEVR	STLQTM(58)ESDIYTEVR	0	1	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.919649	1787.82474	2.5174	0.0022529	-0.29854	-0.00026717	2.2189	0.0019857	894.919487448339	9.6913	0.11527	9.6913	9.647	9.7622	0	294	58	1.12800004657306	0.0379731159015164	1.12800004657306	455.283401837743	0	15.3267098157884						305	14	3	NaN	NaN	NaN	0.00091376	1	26913	58.313	54.33	1	63106			18235	1567	15378	15832	18235	18235	546	
STLTDSLVCK	10	Unmodified	_STLTDSLVCK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.286814	1122.55907	1.9576	0.0011007	-0.98093	-0.00055157	0.97668	0.00054917	562.286307739061	7.7576	0.41687	7.7576	7.6956	8.1124	0	645	73	0.892219381832517	0.0487442756818737	0.892219381832517	361.755338567518	0	19.7636392030707						1349	48	5	NaN	NaN	NaN	3.1662E-07	1	7337	146.03	123.64	1	2129300			18236	679	15379	15833	18236	18236		
STLYVSPHPDAFPSLR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STLYVSPHPDAFPSLR_			1	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.965051	1827.91555	2.2856	0.0020912	0.46244	0.00042312	2.748	0.0025143	915.466852615357	14.453	0.19508	14.453	14.373	14.568	0	243	67	1.16194328902838	0.0438873183410309	1.16194328902838	468.904397499436	0	17.710809777795						1126	23	5	NaN	NaN	NaN	5.9854E-18	1	27922	199.51	177.37	1	736680			18237	858	15380	15834	18237	18237		
STMDNPTTTQYASLMHSFILK	21	Unmodified	_STMDNPTTTQYASLMHSFILK_			0	0	0	Q9NP97	Q9NP97	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	796.052099	2385.13447	0.95483	0.00076009	0.69448	0.00055284	1.6493	0.0013129	796.721724637812	16.218	0.16846	16.218	16.174	16.342	0	432	43	1.035754240522	0.0281756225975058	1.035754240522	625.865042464158	0	17.0254067456724						455	20	6	NaN	NaN	NaN	6.8151E-06	1	36272	73.262	70.873	1	135700			18238	2982	15381	15835	18238	18238		
STMDNPTTTQYASLMHSFILK	21	Oxidation (M)	_STM(Oxidation (M))DNPTTTQYASLMHSFILK_	STM(1)DNPTTTQYASLMHSFILK	STM(82)DNPTTTQYASLM(-82)HSFILK	0	1	0	Q9NP97	Q9NP97	Q9NP97	DYNLRB1	Dynein light chain roadblock-type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.383737	2401.12938	1.5258	0.0012227	-1.0458	-0.00083805	0.48004	0.0003847	801.717937196378	15.562	0.088685	15.562	15.526	15.615	0	432	22	1.035754240522	0.0140829472194866	1.035754240522	625.840909845351	0	8.5094360769458						198	11	4	NaN	NaN	NaN	1.1146E-06	1	36355	86.952	85.857	2	42619			18239	2982	15381	15836	18239	18239	631	
STMVGTPYWMAPEVVTR	17	Unmodified	_STMVGTPYWMAPEVVTR_			0	0	0	Q13177;O75914;Q13153	Q13177	Q13177	PAK2;PAK3;PAK1	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34;Serine/threonine-protein kinase PAK 3;Serine/threonine-protein kinase PAK 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.968422	1923.92229	1.7109	0.0016476	-6.8372	-0.006584	-5.1263	-0.0049365	963.463748862078	15.234	0.23052	15.234	15.118	15.349	0	231	73	1.16991841121525	0.0478770797560264	1.16991841121525	471.945338181605	0	19.3136242493479						891	27	5	NaN	NaN	NaN	0.036212	1	30144	34.472	31.184	1	154870			18240	1638	15382	15837	18240	18240		
STNCFGDNDPIDVCEIGSK	19	Unmodified	_STNCFGDNDPIDVCEIGSK_			0	0	0	Q9H2U2	Q9H2U2	Q9H2U2	PPA2	Inorganic pyrophosphatase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.45152	2126.88848	1.2998	0.0013836	0.3763	0.00040055	1.6761	0.0017841	1064.9535346644	11.837	0.10643	11.837	11.802	11.908	0	198	61	1.1918274123006	0.0398044839607503	1.1918274123006	480.4547179621	0	16.0461589636316						568	13	5	NaN	NaN	NaN	8.1815E-06	1	33701	92.319	89.604	1	170000			18241	2874	15383	15838	18241	18241		
STNEAMEWMNNK	12	Unmodified	_STNEAMEWMNNK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.805576	1453.5966	1.505	0.0010953	-0.67236	-0.00048935	0.83261	0.00060598	727.805546460378	8.9996	0.18625	8.9996	8.9464	9.1326	0	492	43	0.995464410099171	0.0282418742669083	0.995464410099171	402.499581697862	0	11.4191350925964						696	22	5	NaN	NaN	NaN	1.4656E-16	1	17065	203.52	157.07	1	388450			18242	955	15384	15839	18242	18242		
STNGDTFLGGEDFDQALLR	19	Unmodified	_STNGDTFLGGEDFDQALLR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.48453	2054.95451	1.7192	0.0017681	0.36062	0.00037089	2.0798	0.002139	1028.98626987362	16.209	0.21281	16.209	16.156	16.369	0	201	49	1.18983705239708	0.0318523281569778	1.18983705239708	479.761269906637	0	12.843366556192						841	25	6	NaN	NaN	NaN	2.543E-26	1	32618	187.01	181.39	1	367700			18243	1007	15385	15840	18243	18243		
STNLHDYGMLLPCGIDK	17	Unmodified	_STNLHDYGMLLPCGIDK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.309733	1932.90737	0.23206	0.00014975	1.7402	0.001123	1.9723	0.0012727	645.310909185523	12.715	0.097564	12.715	12.662	12.76	1.7764E-15	672	28	0.873923798053065	0.0183032026669903	0.873923798053065	528.791972730771	0	11.074863354369						216	12	3	NaN	NaN	NaN	0.015564	1	30376	29.98	29.241	1	48097			18244	523	15386	15841	18244	18244		
STNPGISIGDVAK	13	Unmodified	_STNPGISIGDVAK_			0	0	0	O15347	O15347	O15347	HMGB3	High mobility group protein B3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.835517	1257.65648	1.47	0.00092588	0.083528	5.2609E-05	1.5536	0.00097849	629.836055244187	8.485	0.18621	8.485	8.414	8.6002	0	558	76	0.951016745717027	0.0505471707378068	0.951016745717027	385.092170944655	0	20.4679042742366						591	22	3	NaN	NaN	NaN	0.00042144	1	11146	64.266	57.575	1	211990			18245	165	15387	15842	18245	18245		
STPTDLILCVPHLYSCLEDR	20	Unmodified	_STPTDLILCVPHLYSCLEDR_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.055732	2388.14537	-0.24744	-0.00019722	3.4245	0.0027295	3.177	0.0025323	797.392571150275	17.929	0.10638	17.929	17.867	17.974	0	558	22	0.951016745717027	0.0141629966659658	0.951016745717027	574.657344858693	0	8.5580722904831						169	13	3	NaN	NaN	NaN	0.0033575	1	36288	49.967	43.58	1	32646			18246	1713	15388	15843	18246	18246		
STPVNVPISQK	11	Unmodified	_STPVNVPISQK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.32987	1168.64519	1.4066	0.00082334	-1.5422	-0.00090269	-0.13556	-7.935E-05	585.829613026173	6.25	0.23055	6.25	6.2146	6.4451	0	609	76	0.916577990479294	0.0506522651893861	0.916577990479294	371.45383957906	0	20.5274167429392						480	27	4	NaN	NaN	NaN	0.00063179	1	8578	94.66	62.532	1	285130			18247	2370	15389	15844	18247	18247		
STQAPLIIRPDSGNPLDTVLK	21	Unmodified	_STQAPLIIRPDSGNPLDTVLK_			0	0	1	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.749625	2234.22705	0.60758	0.0004531	0.29133	0.00021726	0.89891	0.00067036	746.084093312216	15.047	0.1862	15.047	14.967	15.154	1.7764E-15	573	67	0.940896116921038	0.0445708984130808	0.940896116921038	568.768329370834	0	26.9429482947825						1273	22	5	NaN	NaN	NaN	2.0175E-07	1	35035	99.909	96.059	1	605600			18248	1067	15390	15845	18248	18248		
STQGVTLTDLQEAEK	15	Unmodified	_STQGVTLTDLQEAEK_			0	0	0	O14974	O14974	O14974	PPP1R12A	Protein phosphatase 1 regulatory subunit 12A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.409774	1618.805	2.7944	0.0022646	-1.7622	-0.0014281	1.0322	0.0008365	810.409323311583	9.6736	0.10641	9.6736	9.6292	9.7356	0	363	46	1.08195024817156	0.0300863062965449	1.08195024817156	437.047527003636	0	12.1531889158492						344	13	3	NaN	NaN	NaN	3.7967E-06	1	22157	84.999	76.998	1	117740			18249	131	15391	15846	18249	18249		
STSESFIQHIVSLVHHVK	18	Unmodified	_STSESFIQHIVSLVHHVK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.368968	2047.08507	0.52998	0.00036217	-1.1318	-0.00077346	-0.60185	-0.00041129	683.702898883065	15.837	0.1951	15.837	15.783	15.978	0	570	40	0.942920803299286	0.0263136394103891	0.942920803299286	570.313881822196	0	15.9154764477555						588	23	5	NaN	NaN	NaN	8.0251E-05	1	32488	58.508	58.11	1	230530			18250	3113	15392	15847	18250	18250		
STSIQSFK	8	Unmodified	_STSIQSFK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	449.23745	896.460347	0.30578	0.00013737	1.3165	0.00059142	1.6223	0.00072878	449.237992579044	4.4233	0.25713	4.4233	4.3347	4.5918	0	771	52	0.806643990516186	0.0347364557222563	0.806643990516186	328.056965411176	0	14.1270949605549						306	30	2	NaN	NaN	NaN	0.068005	1	2270	33.396	25.392	1	105380			18251	683	15393	15848	18251	18251		
STSLDVEPIYTFR	13	Unmodified	_STSLDVEPIYTFR_			0	0	0	O43815	O43815	O43815	STRN	Striatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.388113	1526.76167	2.0886	0.0015965	-4.7616	-0.0036397	-2.6729	-0.0020432	764.384705293454	13.886	0.12414	13.886	13.832	13.957	0	411	37	1.04982941439551	0.0241238779184587	1.04982941439551	424.289352954322	0	9.7496835318388						169	15	2	NaN	NaN	NaN	0.0019281	1	19321	54.584	47.026	1	56060			18252	234	15394	15849	18252	18252		
STSPPNHAEAIVK	13	Unmodified	_STSPPNHAEAIVK_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.854241	1349.69393	2.5329	0.0017119	-1.5848	-0.0010711	0.94805	0.00064075	675.853172682018	3.3415	0.11528	3.3415	3.2794	3.3947	0	453	37	1.02166545906632	0.0241672134976301	1.02166545906632	413.393218995208	0	9.77870211160888						238	14	3	NaN	NaN	NaN	0.031642	1	13882	39.702	27.745	1	44073		+	18253	22	15395	15850	18253	18253		
STSSHGTDEMESSSYR	16	Unmodified	_STSSHGTDEMESSSYR_			0	0	0	Q8IWS0	Q8IWS0	Q8IWS0	PHF6	PHD finger protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.57245	1759.69552	-0.36552	-0.00021477	2.3306	0.0013694	1.9651	0.0011546	587.573978194976	2.9424	0.079784	2.9424	2.9158	2.9956	0	771	22	0.806643990516186	0.0143052324654583	0.806643990516186	488.42438011603	0	8.6618438635935						110	10	3	NaN	NaN	NaN	7.5373E-05	1	26122	65.408	62.692	1	23385			18254	2205	15396	15851	18254	18254		
STTELPLTVSYDK	13	Unmodified	_STTELPLTVSYDK_			0	0	0	Q96KA5	Q96KA5	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.374672	1452.73479	1.7047	0.00124	-0.97088	-0.00070619	0.73386	0.00053379	727.373990614686	10.844	0.12412	10.844	10.791	10.915	0	477	37	1.0055473068722	0.024187253928307	1.0055473068722	406.578709432911	0	9.77977109549062						272	15	3	NaN	NaN	NaN	0.0011303	1	17052	46.068	39.805	1	83143			18255	2573	15397	15852	18255	18255		
STTSDIPHMLNQVESK	16	Unmodified	_STTSDIPHMLNQVESK_			0	0	0	Q52LJ0	Q52LJ0	Q52LJ0	FAM98B	Protein FAM98B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.292848	1785.85671	-1.2139	-0.00072382	-0.50572	-0.00030155	-1.7196	-0.0010254	596.292539068481	9.9484	0.14179	9.9484	9.8776	10.019	0	762	31	0.812773098473386	0.0204232585244036	0.812773098473386	492.079278994458	0	12.3649052217432						239	17	3	NaN	NaN	NaN	0.0019928	1	26845	28.277	24.772	1	44733			18256	1945	15398	15853	18256	18256		
STTSTIESFAAQEK	14	Unmodified	_STTSTIESFAAQEK_			0	0	0	O95232	O95232	O95232	LUC7L3	Luc7-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.364835	1498.71512	1.6189	0.0012148	-2.7725	-0.0020804	-1.1536	-0.0008656	750.361927624848	9.2479	0.25719	9.2479	9.1326	9.3898	0	423	67	1.04178812298108	0.0442454427347931	1.04178812298108	421.110241163489	0	17.8848353608774						639	30	3	NaN	NaN	NaN	6.8189E-06	1	18492	112.93	97.046	1	204200			18257	413	15399	15854	18257	18257		
STTSTIESFAAQEK	14	Unmodified	_STTSTIESFAAQEK_			0	0	0	O95232	O95232	O95232	LUC7L3	Luc7-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.364835	1498.71512	1.5867	0.0011906	1.3534	0.0010155	2.9401	0.0022061	750.365618882338	9.1681	0.16848	9.1681	9.1238	9.2923	0	396	31	1.05987478976334	0.0200838253150546	1.05987478976334	428.421193909525	0	8.11825746102255						179	20	2	NaN	NaN	NaN	0.00023833	1	18493	62.705	37.884	1	56177			18258	413	15399	15854	18258	18258		
STTSVSEEDVSSR	13	Unmodified	_STTSVSEEDVSSR_			0	0	0	Q96IZ0	Q96IZ0	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.315342	1382.61613	2.2242	0.0015399	-0.87143	-0.00060331	1.3528	0.00093655	692.314738127509	3.5721	0.17732	3.5721	3.51	3.6874	0	537	40	0.965173861991602	0.0262845144362098	0.965173861991602	390.440923969798	0	10.6328512475409						360	21	3	NaN	NaN	NaN	0.00052755	1	14898	75.474	65.224	1	106580			18259	2563	15400	15855	18259	18259		
STTTGHLIYK	10	Unmodified	_STTTGHLIYK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.803488	1119.59242	2.3987	0.0013452	-0.61671	-0.00034585	1.782	0.00099933	560.80326845847	3.776	0.25716	3.776	3.7228	3.98	0	657	22	0.884090832094921	0.0142239758453706	0.884090832094921	358.471092852641	0	5.76737590855606						273	30	3	NaN	NaN	NaN	0.0061715	1	7255	62.969	28.188	1	298800			18260	1446	15401	15856	18260	18260		
STVDAPTAAGR	11	Unmodified	_STVDAPTAAGR_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.26727	1044.51999	0.72035	0.00037694	0.88568	0.00046345	1.606	0.00084038	523.267597590445	3.0666	0.097509	3.0666	3.0311	3.1286	0	738	22	0.829104889055312	0.0142813781161694	0.829104889055312	336.469699246291	0	5.79570940058647						104	12	2	NaN	NaN	NaN	0.063225	1	5336	34.953	30.046	1	21085			18261	2679	15402	15857	18261	18261		
STVHEILCK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))STVHEILCK_			1	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.789524	1127.56449	1.6965	0.00095814	0.022635	1.2784E-05	1.7191	0.00097093	564.789533277515	8.1302	0.53225	8.1302	8.068	8.6002	0	615	85	0.912521036363781	0.0567974108214384	0.912521036363781	369.966829097693	0	23.0275874694351						1191	61	4	NaN	NaN	NaN	1.7982E-06	1	7454	137.84	98.519	1	1659300			18262	558	15403	15858	18262	18262		
STVLSLDWHPNNVLLAAGSCDFK	23	Unmodified	_STVLSLDWHPNNVLLAAGSCDFK_			0	0	0	O15143;Q92747	O15143;Q92747	O15143	ARPC1B;ARPC1A	Actin-related protein 2/3 complex subunit 1B;Actin-related protein 2/3 complex subunit 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.756563	2543.24786	-0.39265	-0.00033326	-0.32729	-0.00027779	-0.71993	-0.00061105	849.091236862355	17.06	0.062061	17.06	17.034	17.096	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	589.109298275578	0	12.2020716758675						186	8	4	NaN	NaN	NaN	2.1951E-06	1	37001	47.491	36.845	1	36185			18263	147;2430	15404	15859	18263	18263		
STVLTPMFVETQASQGTLQTR	21	Unmodified	_STVLTPMFVETQASQGTLQTR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1148.0861	2294.15765	0.4343	0.00049861	-1.0493	-0.0012047	-0.61504	-0.00070612	1148.58557039538	14.444	0.079792	14.444	14.4	14.48	0	63	34	1.28111162701928	0.0217652629836462	1.28111162701928	516.203001421702	0	8.76995715434379						235	10	3	NaN	NaN	NaN	6.0931E-16	1	35594	105.19	94.436	1	43922			18264	1465	15405	15860	18264	18264		
STYNHLSSWLTDAR	14	Unmodified	_STYNHLSSWLTDAR_			0	0	0	P61106	P61106	P61106	RAB14	Ras-related protein Rab-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.933871	1649.77978	-1.2888	-0.00071007	-3.0359	-0.0016726	-4.3248	-0.0023827	551.266183169207	10.942	0.12414	10.942	10.888	11.012	0	783	46	0.798467866007927	0.0306583415833394	0.798467866007927	483.725165942893	0	18.5733352602915						373	15	4	NaN	NaN	NaN	9.9329E-06	1	23021	104.04	80.206	1	113410			18265	1329	15406	15861	18265	18265		
SVAAIHPSLEIPMLIPK	17	Unmodified	_SVAAIHPSLEIPMLIPK_			0	0	0	O60256	O60256	O60256	PRPSAP2	Phosphoribosyl pyrophosphate synthase-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.018219	1815.03283	-0.51308	-0.00031094	-1.1426	-0.00069243	-1.6557	-0.0010034	606.017624614347	16.209	0.16849	16.209	16.103	16.271	0	633	28	0.900343422309015	0.0182727556379993	0.900343422309015	545.029763288189	0	11.0615521069286						257	20	3	NaN	NaN	NaN	0.036759	1	27612	25.705	22.811	1	59120			18266	250	15407	15862	18266	18266		
SVAEGLSGSLVQEPFQLATEK	21	Unmodified	_SVAEGLSGSLVQEPFQLATEK_			0	0	0	Q9ULW0	Q9ULW0	Q9ULW0	TPX2	Targeting protein for Xklp2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1095.56807	2189.12158	0.46358	0.00050789	-3.0425	-0.0033332	-2.5789	-0.0028253	1095.56316136541	16.103	0.11526	16.103	16.032	16.147	0	102	64	1.25537494996371	0.0415860345111612	1.25537494996371	505.978943846764	0	16.7612535373122						274	14	3	NaN	NaN	NaN	0.00023805	1	34560	65.212	57.565	1	58039			18267	3281	15408	15863	18267	18267		
SVANVIQQAGCPVPEYIK	18	Unmodified	_SVANVIQQAGCPVPEYIK_			0	0	0	Q9Y2R4	Q9Y2R4	Q9Y2R4	DDX52	Probable ATP-dependent RNA helicase DDX52	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.011675	1972.0088	1.3387	0.0013213	-0.42025	-0.00041479	0.91847	0.00090654	987.512562409171	13.15	0.062069	13.15	13.123	13.185	0	219	40	1.17788915118882	0.0258924572936763	1.17788915118882	475.077734832727	0	10.4431982822134						155	8	3	NaN	NaN	NaN	7.6203E-05	1	31145	94.63	90.894	1	27484			18268	3349	15409	15864	18268	18268		
SVAPAAPTSCDFSPGDLVWAK	21	Unmodified	_SVAPAAPTSCDFSPGDLVWAK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.5226	2175.03065	1.1057	0.0012035	3.0409	0.0033101	4.1466	0.0045136	1089.02536495083	15.18	0.13299	15.18	15.118	15.251	0	135	94	1.23356193185193	0.061506826598742	1.23356193185193	497.207497572339	0	24.7913416806437						911	16	5	NaN	NaN	NaN	0.0056827	1	34377	56.08	34.042	1	194410			18269	1218	15410	15865	18269	18269		
SVAVYGGGSMWEQAK	15	Unmodified	_SVAVYGGGSMWEQAK_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.37194	1568.72933	1.8659	0.0014654	-0.073996	-5.8114E-05	1.7919	0.0014073	785.372547667955	10.002	0.133	10.002	9.9662	10.099	0	408	31	1.0518390438467	0.0200976833254141	1.0518390438467	424.999326119346	0	8.12054079930681						209	16	3	NaN	NaN	NaN	0.022904	1	20618	30.068	28.694	1	46696			18270	2189	15411	15866	18270	18270		
SVDEALR	7	Unmodified	_SVDEALR_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	395.208692	788.402832	-0.99713	-0.00039408	0.94864	0.00037491	-0.048495	-1.9166E-05	395.209219651735	3.4213	0.29273	3.4213	3.3503	3.6431	0	852	46	0.751366682244005	0.0307566940275966	0.751366682244005	306.206945198141	0	12.5343770826477						375	34	2	NaN	NaN	NaN	0.046795	1	894	56.091	34.163	1	115800			18271	936	15412	15867	18271	18271		
SVDETLR	7	Unmodified	_SVDETLR_			0	0	0	Q06830;Q13162	Q06830;Q13162	Q06830	PRDX1;PRDX4	Peroxiredoxin-1;Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	410.213975	818.413397	-0.16742	-6.8677E-05	0.57434	0.0002356	0.40692	0.00016693	410.214435100621	3.2439	0.57648	3.2439	3.0932	3.6696	0	825	61	0.769815552739974	0.0409661028809166	0.769815552739974	313.529016776107	0	16.6845966045857						1419	66	4	NaN	NaN	NaN	0.0092387	1	1184	66.087	27.765	1	962650			18272	1564;1637	15413	15868	18272	18272		
SVDETTQAMAFDGIIFQGQSLK	22	Unmodified	_SVDETTQAMAFDGIIFQGQSLK_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1193.58339	2385.15223	0.12985	0.00015499	0.42706	0.00050973	0.55691	0.00066471	1194.08572799351	17.415	0.079801	17.415	17.38	17.459	0	63	43	1.28111162701928	0.027703142560725	1.28111162701928	516.084401382204	0	11.1599640837874						275	10	4	NaN	NaN	NaN	3.2482E-08	1	36273	81.409	77.968	1	46865			18273	850	15414	15869	18273	18273		
SVDEVFDEVVQIFDK	15	Unmodified	_SVDEVFDEVVQIFDK_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.935625	1767.8567	1.8878	0.0016706	-1.625	-0.001438	0.26287	0.00023262	885.435044907143	20.155	0.053206	20.155	20.146	20.199	0	324	34	1.1079963157843	0.0220207732442941	1.1079963157843	447.248374598038	0	8.88879764363747						147	7	4	NaN	NaN	NaN	0.00019573	1	26339	68.548	66.96	1	87870			18274	902	15415	15870	18274	18274		
SVDPDSPAEASGLR	14	Unmodified	_SVDPDSPAEASGLR_			0	0	0	O14745	O14745	O14745	SLC9A3R1	Na(+)/H(+) exchange regulatory cofactor NHE-RF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.836245	1399.65794	2.0878	0.0014632	-2.6249	-0.0018396	-0.53708	-0.00037641	700.835645930706	6.1614	0.28378	6.1614	6.0638	6.3476	0	522	67	0.975277694896658	0.0444169357329506	0.975277694896658	394.48066146356	0	17.965777623957						824	33	3	NaN	NaN	NaN	0.0052636	1	15437	63.212	53.697	1	366700			18275	116	15416	15871	18275	18275		
SVDPENNPTLVEVLEGVVR	19	Unmodified	_SVDPENNPTLVEVLEGVVR_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.363659	2065.06915	-0.21282	-0.00014671	-0.16628	-0.00011463	-0.3791	-0.00026134	689.697710514579	19.516	0.035465	19.516	19.508	19.543	0	546	16	0.959108205975751	0.0101094268867077	0.959108205975751	580.070624699467	0	6.11420226934683						46	5	4	NaN	NaN	NaN	0.00095323	1	32795	56.08	54.81	1	5518.7			18276	3437	15417	15872	18276	18276		
SVDPENNPTLVEVLEGVVR	19	Unmodified	_SVDPENNPTLVEVLEGVVR_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.54185	2065.06915	1.3592	0.0014048	-0.55044	-0.0005689	0.80874	0.00083586	1034.04264268106	19.525	0.079791	19.525	19.49	19.57	0	183	67	1.20177511391933	0.0437849366905276	1.20177511391933	484.558960417661	0	17.6542043174139						378	10	4	NaN	NaN	NaN	2.1528E-10	1	32796	95.677	94.202	1	87898			18277	3437	15417	15872	18277	18277		
SVDPTLALSVYLR	13	Unmodified	_SVDPTLALSVYLR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.403566	1432.79258	0.57854	0.00041504	-0.15653	-0.0001123	0.422	0.00030275	717.403311672774	16.856	0.28376	16.856	16.785	17.069	0	444	49	1.02770517576159	0.032209607794301	1.02770517576159	415.592478384408	0	13.0252051334697						748	33	5	NaN	NaN	NaN	7.413E-08	1	16484	133.76	125.75	1	323040			18278	1503	15418	15873	18278	18278		
SVDYPCLLRPSYVLSGSAMNVVFSEDEMK	29	Unmodified	_SVDYPCLLRPSYVLSGSAMNVVFSEDEMK_			0	0	1	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1098.52242	3292.54542	0.58058	0.00063778	1.3714	0.0015065	1.9519	0.0021442	1099.19274321364	19.055	0.088678	19.055	19.011	19.1	0	261	22	1.14997238118939	0.0139708605655524	1.14997238118939	693.772470198337	0	8.42854889726561						113	11	3	NaN	NaN	NaN	3.9821E-06	1	38539	43.865	43.751	1	20596			18279	922	15419	15874	18279	18279		
SVEEEEQVWR	10	Unmodified	_SVEEEEQVWR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.801674	1289.58879	1.4648	0.00094598	-0.2666	-0.00017217	1.1982	0.00077381	645.801356888101	7.2787	0.11528	7.2787	7.2432	7.3585	0	597	31	0.924688525662974	0.0202707209833614	0.924688525662974	374.330463735721	0	8.20595062593509						217	14	3	NaN	NaN	NaN	4.9396E-05	1	12041	100.84	63.245	1	65208			18280	3158	15420	15875	18280	18280		
SVEEFQCLNR	10	Unmodified	_SVEEFQCLNR_			0	0	0	P21127;Q9UQ88	P21127	P21127	CDK11B;CDK11A	Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.298244	1280.58194	1.2693	0.00081399	1.4791	0.00094854	2.7484	0.0017625	641.300025873021	7.4383	0.11534	7.4383	7.4117	7.527	0	588	28	0.93076847747433	0.0182322776363114	0.93076847747433	376.819813858066	0	7.38130225871652						186	14	3	NaN	NaN	NaN	0.0077045	1	11766	58.426	44.431	1	49146			18281	787	15421	15876	18281	18281		
SVEELLEAELLK	12	Unmodified	_SVEELLEAELLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.882133	1371.74971	0.3872	0.00026596	1.1412	0.0007839	1.5285	0.0010499	686.88278141522	17.956	0.13301	17.956	17.92	18.053	0	474	61	1.00756305028564	0.040289830422827	1.00756305028564	407.620541998898	0	16.2996871603624						558	16	4	NaN	NaN	NaN	0.00028168	1	14549	54.584	37.114	1	149870			18282	2167	15422	15877	18282	18282		
SVEEPTQPGGTGLSDSR	17	Unmodified	_SVEEPTQPGGTGLSDSR_			0	0	0	Q9H0B6	Q9H0B6	Q9H0B6	KLC2	Kinesin light chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.905387	1715.79622	2.2875	0.0019648	-3.8408	-0.0032989	-1.5533	-0.0013341	858.901619619891	5.4873	0.088649	5.4873	5.4608	5.5494	0	384	46	1.06790610341098	0.030094602206975	1.06790610341098	431.167528493321	0	12.1507080192961						187	11	3	NaN	NaN	NaN	1.2374E-06	1	24925	82.437	61.348	1	33977			18283	2842	15423	15878	18283	18283		
SVEETLR	7	Unmodified	_SVEETLR_			0	0	0	P30048	P30048	P30048	PRDX3	Thioredoxin-dependent peroxide reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	417.2218	832.429047	-0.55285	-0.00023066	0.80451	0.00033566	0.25166	0.000105	417.222515449993	3.4923	0.23952	3.4923	3.4035	3.6431	0	816	49	0.775960037304758	0.0327500630966873	0.775960037304758	315.943885912372	0	13.3346843924887						535	28	3	NaN	NaN	NaN	0.06995	1	1344	26.223	10.725	1	136870			18284	898	15424	15879	18284	18284		
SVEEVASEIQPFLR	14	Unmodified	_SVEEVASEIQPFLR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	535.282389	1602.82534	-0.41822	-0.00022386	-1.0841	-0.00058032	-1.5024	-0.00080419	535.28159040667	16.076	0.18623	16.076	16.023	16.209	0	687	37	0.863749705078866	0.0244364826116721	0.863749705078866	523.401472383479	0	14.8076357116147						423	22	4	NaN	NaN	NaN	0.07282	1	21681	18.507	10.506	1	109050			18285	718	15425	15880	18285	18285		
SVEEVASEIQPFLR	14	Unmodified	_SVEEVASEIQPFLR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.419945	1602.82534	1.7366	0.0013935	1.3138	0.0010542	3.0504	0.0024477	802.421282445222	16.076	0.133	16.076	16.014	16.147	0	303	55	1.12200181823275	0.0359918600529883	1.12200181823275	453.264449173073	0	14.5399324283874						610	16	4	NaN	NaN	NaN	5.6055E-08	1	21683	117.99	105.4	1	199970			18286	718	15425	15880	18286	18286		
SVEFEEMDILDQGALQR	17	Unmodified	_SVEFEEMDILDQGALQR_			0	0	0	Q14376	Q14376	Q14376	GALE	UDP-glucose 4-epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.47258	1978.93061	1.0274	0.0010176	0.085925	8.5106E-05	1.1133	0.0011027	990.472520937518	16.324	0.12414	16.324	16.262	16.386	0	225	58	1.17390432875292	0.0378428307662209	1.17390432875292	473.458961040924	0	15.2627662225731						444	15	5	NaN	NaN	NaN	4.0002E-19	1	31267	140.01	121.48	1	94929			18287	1750	15426	15881	18287	18287		
SVEGWILFVTGVHEEATEEDIHDK	24	Unmodified	_SVEGWILFVTGVHEEATEEDIHDK_			0	0	0	Q9Y5S9	Q9Y5S9	Q9Y5S9	RBM8A	RNA-binding protein 8A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	914.108207	2739.30279	0.83146	0.00076004	1.3156	0.0012026	2.1471	0.0019626	914.44356722504	18.222	0.13301	18.222	18.186	18.319	0	297	28	1.12600091227925	0.0179946865546097	1.12600091227925	679.887916303337	0	10.8653286269374						258	16	5	NaN	NaN	NaN	0.00054519	1	37730	51.128	45.081	1	45504			18288	3442	15427	15882	18288	18288		
SVELEEALPVTTAEGMAK	18	Unmodified	_SVELEEALPVTTAEGMAK_			0	0	0	Q92522	Q92522	Q92522	H1FX	Histone H1x	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.974424	1873.93429	2.3189	0.0021751	-5.0309	-0.0047188	-2.712	-0.0025438	938.471462458131	13.806	0.23052	13.806	13.735	13.966	0	255	58	1.15396378101328	0.0379104952093297	1.15396378101328	465.598142016631	0	15.2960226506374						1051	27	5	NaN	NaN	NaN	0.033926	1	29022	47.57	44.855	1	286570			18289	2406	15428	15883	18289	18289		
SVEMHHEALSEALPGDNVGFNVK	23	Unmodified	_SVEMHHEALSEALPGDNVGFNVK_			0	0	0	P68104;Q05639	P68104	P68104	EEF1A1;EEF1A2	Elongation factor 1-alpha 1;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	620.80232	2479.18017	1.5374	0.00095439	6.7919	0.0042165	8.3293	0.0051708	620.810197322363	10.782	0.15076	10.782	10.729	10.879	0	549	40	0.957085760909907	0.0262881524128359	0.957085760909907	770.933929196077	0	21.1751438153938						400	18	5	NaN	NaN	NaN	0.00058676	1	36728	81.908	77.074	1	123570			18290	1446	15429	15884	18290	18290		
SVESSQSETLIVPR	14	Unmodified	_SVESSQSETLIVPR_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.401752	1530.78895	2.4718	0.0018944	-0.99442	-0.00076213	1.4774	0.0011323	766.400713445997	8.3697	0.079854	8.3697	8.343	8.4229	0	324	31	1.1079963157843	0.0200175059687449	1.1079963157843	447.786949361193	0	8.0898986791475						175	10	3	NaN	NaN	NaN	5.6548E-06	1	19469	103.76	91.164	1	38754			18291	1668	15430	15885	18291	18291		
SVEVEGYGSK	10	Unmodified	_SVEVEGYGSK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.756204	1053.49785	1.0456	0.0005518	3.5984	0.0018991	4.6439	0.0024509	527.758225793644	4.3879	0.20393	4.3879	4.2726	4.4765	0	702	37	0.853568545818287	0.0244398769037869	0.853568545818287	346.359190005849	0	9.91716015041675						224	24	2	NaN	NaN	NaN	0.054434	1	5553	33.426	24.033	1	63402			18292	2114	15431	15886	18292	18292		
SVEVQGETETIIATK	15	Unmodified	_SVEVQGETETIIATK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.922517	1603.83048	1.8565	0.0014906	-0.39712	-0.00031885	1.4593	0.0011717	802.922347356767	8.9996	0.088677	8.9996	8.9642	9.0528	0	396	34	1.05987478976334	0.0220937320698047	1.05987478976334	428.164181735744	0	8.92534175217889						231	11	4	NaN	NaN	NaN	4.3121E-06	1	21718	115.05	104.26	1	59637			18293	280	15432	15887	18293	18293		
SVFALTNGIYPHK	13	Unmodified	_SVFALTNGIYPHK_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.92951	1445.7667	-2.422	-0.0011697	-1.9589	-0.00094602	-4.3809	-0.0021157	482.929667393293	11.695	0.097564	11.695	11.66	11.758	0	801	31	0.78619514174348	0.0204602376573505	0.78619514174348	476.848722163133	0	12.4096902461463						158	12	3	NaN	NaN	NaN	0.0085893	1	16864	34.953	20.958	1	39520			18294	1533	15433	15888	18294	18294		
SVFALTNGIYPHK	13	Unmodified	_SVFALTNGIYPHK_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.890626	1445.7667	1.1132	0.00080587	1.4602	0.001057	2.5734	0.0018629	723.891961438211	11.695	0.12412	11.695	11.642	11.766	0	378	31	1.07192009927972	0.020067214614357	1.07192009927972	433.435295948514	0	8.11426067211602						245	15	3	NaN	NaN	NaN	0.0004692	1	16866	63.212	53.95	1	69477			18295	1533	15433	15888	18295	18295		
SVFDEELTNTSK	12	Unmodified	_SVFDEELTNTSK_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.327721	1368.64089	1.2397	0.0008496	0.25827	0.000177	1.498	0.0010266	685.326495334503	9.2303	0.2306	9.2303	9.1326	9.3632	0	492	55	0.995464410099171	0.0363310729406037	0.995464410099171	402.735036675272	0	14.698462189852						582	27	4	NaN	NaN	NaN	0.0054398	1	14447	48.785	44.583	1	158840			18296	2546	15434	15889	18296	18296		
SVFFGPDFITVTK	13	Unmodified	_SVFFGPDFITVTK_			0	0	0	Q9UMS0	Q9UMS0	Q9UMS0	NFU1	NFU1 iron-sulfur cluster scaffold homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.387385	1456.76022	-0.011367	-8.2907E-06	-0.41211	-0.00030059	-0.42348	-0.00030888	729.387165695505	16.83	0.20397	16.83	16.732	16.936	0	459	46	1.01763759082241	0.0302069336497983	1.01763759082241	411.456515326886	0	12.2134242782955						508	24	4	NaN	NaN	NaN	0.002595	1	17156	44.598	40.615	1	142770			18297	3287	15435	15890	18297	18297		
SVFPEQANNNEWAR	14	Unmodified	_SVFPEQANNNEWAR_			0	0	0	O43242	O43242	O43242	PSMD3	26S proteasome non-ATPase regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.386968	1660.75938	2.3658	0.0019669	0.1374	0.00011424	2.5032	0.0020811	831.386889669961	9.5051	0.23941	9.5051	9.3987	9.6381	0	393	76	1.0618830335572	0.0501576941762703	1.0618830335572	428.849535950639	0	20.256566111421						871	28	4	NaN	NaN	NaN	1.3505E-05	1	23358	99.589	95.606	1	374480			18298	191	15436	15891	18298	18298		
SVFVGNIPYEATEEQLK	17	Unmodified	_SVFVGNIPYEATEEQLK_			0	0	0	P33240;Q9H0L4	P33240	P33240	CSTF2;CSTF2T	Cleavage stimulation factor subunit 2;Cleavage stimulation factor subunit 2 tau variant	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.488556	1922.96256	1.7703	0.0017039	-0.39598	-0.00038113	1.3743	0.0013227	962.989445047154	13.691	0.21279	13.691	13.611	13.824	0	228	64	1.17191150690002	0.0418377832403103	1.17191150690002	472.751021153069	0	16.8774302779543						433	25	2	NaN	NaN	NaN	2.0326E-06	1	30121	81.908	66.292	1	273760			18299	945	15437	15892	18299	18299		
SVGDGETVEFDVVEGEK	17	Unmodified	_SVGDGETVEFDVVEGEK_			0	0	0	P16989;Q9Y2T7;P67809	P16989;P67809	P67809	YBX3;YBX2;YBX1	Y-box-binding protein 3;Y-box-binding protein 2;Nuclease-sensitive element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.415253	1794.81595	2.4694	0.0022185	0.066355	5.9614E-05	2.5357	0.0022781	898.415220361792	11.483	0.6208	11.483	11.438	12.059	0	300	97	1.12400150285141	0.0640208210659392	1.12400150285141	453.655907339701	0	25.8393103528978						2580	71	5	NaN	NaN	NaN	1.2838E-26	1	27090	189.13	171.4	1	1511400			18300	1440;733	15438	15893	18300	18300		
SVGEVMAIGR	10	Unmodified	_SVGEVMAIGR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.771134	1017.52771	0.2639	0.00013453	-1.3996	-0.0007135	-1.1357	-0.00057897	509.771140051858	7.9615	0.29275	7.9615	7.8463	8.139	8.8818E-16	714	58	0.845418525735192	0.0387099225361016	0.845418525735192	343.208535760297	0	15.7147914655129						741	34	4	NaN	NaN	NaN	3.2777E-05	1	4679	86.205	54.253	1	327670			18301	922	15439	15894	18301	18301		
SVGGSGGGSFGDNLVTR	17	Unmodified	_SVGGSGGGSFGDNLVTR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.878975	1565.7434	2.1128	0.0016562	-1.4514	-0.0011377	0.6614	0.00051846	783.877960306032	8.281	0.12424	8.281	8.2277	8.352	0	423	31	1.04178812298108	0.0201087800634321	1.04178812298108	420.94524444299	0	8.12516014775633						242	15	3	NaN	NaN	NaN	7.3188E-05	1	20525	83.474	77.978	1	58448			18302	493	15440	15895	18302	18302		
SVGMIAGGTGITPMLQVIR	19	Unmodified	_SVGMIAGGTGITPMLQVIR_			0	0	0	P00387	P00387	P00387	CYB5R3	NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.020989	1900.02742	1.1084	0.0010541	-6.9572	-0.0066164	-5.8488	-0.0055623	951.015094175322	17.034	0.45227	17.034	16.91	17.362	0	219	52	1.17788915118882	0.0338733288251551	1.17788915118882	475.20352567487	0	13.6657386374702						563	52	2	NaN	NaN	NaN	0.0018454	1	29608	66.485	48.387	1	302290			18303	474	15441	15896	18303	18303		
SVGWGNIFQLPFK	13	Unmodified	_SVGWGNIFQLPFK_			0	0	0	Q9H1C4	Q9H1C4	Q9H1C4	UNC93B1	Protein unc-93 homolog B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.900994	1491.78744	0.33745	0.00025204	0.75494	0.00056387	1.0924	0.00081591	746.901412516956	19.552	0.088662	19.552	19.49	19.579	0	450	43	1.02367897599655	0.0281834048046041	1.02367897599655	413.807753874592	0	11.3927429518402						208	11	3	NaN	NaN	NaN	0.00028329	1	18304	72.922	69.029	1	43786			18304	2855	15442	15897	18304	18304		
SVGYKPDFVGFEIPDK	16	Unmodified	_SVGYKPDFVGFEIPDK_			0	0	1	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.973444	1796.8985	-2.2685	-0.001361	-0.16395	-9.8364E-05	-2.4324	-0.0014594	600.307704167183	13.336	0.14192	13.336	13.283	13.425	0	795	40	0.790287188799094	0.0265927576463694	0.790287188799094	478.442947990462	0	16.0993592504753						470	17	5	NaN	NaN	NaN	0.013153	1	27138	57.042	53.06	1	194840			18305	481	15443	15898	18305	18305		
SVGYKPDFVGFEIPDK	16	Unmodified	_SVGYKPDFVGFEIPDK_			0	0	1	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.456527	1796.8985	1.9639	0.0017664	-0.50463	-0.00045389	1.4592	0.0013125	899.455756223311	13.336	0.13303	13.336	13.283	13.416	0	309	82	1.11800162319566	0.0539989629372133	1.11800162319566	451.230300793408	0	21.7942154851653						753	16	5	NaN	NaN	NaN	0.038846	1	27139	69.201	54.838	1	272820			18306	481	15443	15898	18306	18306		
SVHAWEISDQLLQIR	15	Unmodified	_SVHAWEISDQLLQIR_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	598.988087	1793.94243	-0.71461	-0.00042804	-0.73525	-0.00044041	-1.4499	-0.00086845	598.987617603936	15.012	0.097545	15.012	14.976	15.074	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	534.008082443498	0	9.84633405645286						215	12	4	NaN	NaN	NaN	6.5669E-07	1	27081	106	83.105	1	62551			18307	3437	15444	15899	18307	18307		
SVHPYEVAEVIALPVEQGNFPYLQWVR	27	Unmodified	_SVHPYEVAEVIALPVEQGNFPYLQWVR_			0	0	0	O60888	O60888	O60888	CUTA	Protein CutA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1047.54498	3139.61311	1.7796	0.0018642	-0.37358	-0.00039134	1.406	0.0014728	1048.21339993681	19.933	0.035468	19.933	19.915	19.951	0	354	34	1.08796502040166	0.0220480903949298	1.08796502040166	656.498347565868	0	13.3042282057107						154	5	6	NaN	NaN	NaN	0.0016023	1	38405	36.136	36.041	1	34003			18308	293	15445	15900	18308	18308		
SVIDPVPAPVGDSHVDGAAK	20	Unmodified	_SVIDPVPAPVGDSHVDGAAK_			0	0	0	Q13177	Q13177	Q13177	PAK2	Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.333812	1929.97961	1.3713	0.0008836	0.75278	0.00048504	2.1241	0.0013686	644.668722776017	8.8221	0.20418	8.8221	8.7334	8.9375	0	591	103	0.928742107665821	0.0688156045560857	0.928742107665821	561.967394475999	0	41.6392512759734						1036	24	4	NaN	NaN	NaN	0.011669	1	30298	41.499	39.911	1	198620			18309	1638	15446	15901	18309	18309		
SVIEQGGIQTVDQLIK	16	Unmodified	_SVIEQGGIQTVDQLIK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.480534	1726.94651	2.454	0.0021214	-0.35962	-0.00031089	2.0943	0.0018105	864.480422168239	14.622	0.13302	14.622	14.577	14.71	0	327	139	1.10599442759226	0.0919034870038662	1.10599442759226	446.522587165497	0	37.1041496798805						1061	16	4	NaN	NaN	NaN	1.7273E-33	1	25247	269.15	251.42	1	447940			18310	2370	15447	15902	18310	18310		
SVIFHNHLDYLAK	13	Unmodified	_SVIFHNHLDYLAK_			0	0	0	O75717	O75717	O75717	WDHD1	WD repeat and HMG-box DNA-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.612181	1555.81471	-0.23104	-0.00012005	-1.4569	-0.00075704	-1.688	-0.00087709	519.612014535032	8.4672	0.088693	8.4672	8.4318	8.5205	0	726	22	0.837263974740672	0.0142754238517586	0.837263974740672	507.483217936438	0	8.65263316260672						162	11	4	NaN	NaN	NaN	0.029826	1	20235	34.779	32.3	1	39871			18311	354	15448	15903	18311	18311		
SVISGGLDALEFIGK	15	Unmodified	_SVISGGLDALEFIGK_			0	0	0	Q9NRY5	Q9NRY5	Q9NRY5	FAM114A2	Protein FAM114A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.414131	1504.81371	0.37723	0.00028421	-0.52387	-0.00039469	-0.14664	-0.00011048	753.41386522883	18.018	0.07983	18.018	18	18.08	0	429	28	1.03776581230406	0.0181016489291916	1.03776581230406	419.468783569115	0	7.3167535169278						124	10	2	NaN	NaN	NaN	0.00026262	1	18664	45.183	42.305	1	40898			18312	3031	15449	15904	18312	18312		
SVLCSTPTINIPASPFMQK	19	Unmodified	_SVLCSTPTINIPASPFMQK_			0	0	0	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.03429	2090.05403	1.7082	0.0017869	-1.3349	-0.0013964	0.37329	0.00039048	1046.03349272491	15.996	0.20394	15.996	15.899	16.103	0	174	73	1.20774045859593	0.0477129662713132	1.20774045859593	486.925324050328	0	19.2364604478606						1045	24	6	NaN	NaN	NaN	7.0638E-05	1	33189	70.598	68.865	1	291510			18313	2574	15450	15905	18313	18313		
SVLDAAQIVGLNCLR	15	Unmodified	_SVLDAAQIVGLNCLR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.943064	1627.87158	1.6499	0.0013446	-1.2152	-0.00099033	0.4347	0.00035426	814.94223955135	16.484	0.17733	16.484	16.395	16.573	0	366	130	1.07994477139643	0.0860932360681257	1.07994477139643	436.216809466404	0	34.7752197602796						1342	20	5	NaN	NaN	NaN	4.6502E-17	1	22418	195.8	183.2	1	476660			18314	2415	15451	15906	18314	18314		
SVLELIPELNEK	12	Unmodified	_SVLELIPELNEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.390125	1382.7657	0.49958	0.00034591	-0.14117	-9.7745E-05	0.35841	0.00024816	692.390086896415	16.422	0.32808	16.422	16.271	16.599	0	495	55	0.993446994398923	0.0363109867512514	0.993446994398923	401.877795792365	0	14.6888353388877						941	38	5	NaN	NaN	NaN	2.2684E-07	1	14923	121.8	111.71	1	731260			18315	1055	15452	15907	18315	18315		
SVLHEVMEQQTLSIAK	16	Unmodified	_SVLHEVMEQQTLSIAK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	604.988988	1811.94513	0.31923	0.00019313	0.15478	9.3641E-05	0.47401	0.00028677	604.989000507527	11.35	0.15079	11.35	11.314	11.465	0	651	70	0.888155670855968	0.0467813693639737	0.888155670855968	537.658749497046	0	28.3198243025939						476	18	4	NaN	NaN	NaN	5.7515E-05	1	27530	78.864	75.779	1	139970			18316	950	15453	15908	18316	18316		
SVLHHFHFK	9	Unmodified	_SVLHHFHFK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	384.541809	1150.6036	-0.53004	-0.00020382	-0.8045	-0.00030936	-1.3345	-0.00051319	384.541513847933	4.5829	0.17734	4.5829	4.5209	4.6982	0	906	22	0.714399420407021	0.0143952206507976	0.714399420407021	434.352871955446	0	8.75225434609666						152	21	2	NaN	NaN	NaN	0.059338	1	8093	12.827	5.1807	1	38151			18317	1826	15454	15909	18317	18317		
SVLLTGYLEYLIK	13	Unmodified	_SVLLTGYLEYLIK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.439618	1510.86468	1.025	0.00077533	-0.03777	-2.8571E-05	0.9872	0.00074676	756.439907572367	19.862	0.044336	19.862	19.845	19.889	0	378	34	1.07192009927972	0.0220785024437311	1.07192009927972	433.258256091002	0	8.92388665190589						108	6	3	NaN	NaN	NaN	3.0538E-05	1	18842	79.311	70.837	1	27918			18318	1903	15455	15910	18318	18318		
SVLNSITEEVLDHMGTFR	18	Unmodified	_SVLNSITEEVLDHMGTFR_			0	0	0	Q13416	Q13416	Q13416	ORC2	Origin recognition complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.34209	2047.00444	0.37957	0.00025937	-2.0148	-0.0013768	-1.6352	-0.0011174	683.675496893856	19.827	0.026601	19.827	19.809	19.836	0	582	19	0.934820374997243	0.012154009255217	0.934820374997243	565.414592103991	0	7.35120282919263						70	4	4	NaN	NaN	NaN	0.00024602	1	32481	59.77	56.876	1	13616			18319	1662	15456	15911	18319	18319		
SVLTGGLDALEFIGK	15	Unmodified	_SVLTGGLDALEFIGK_			0	0	0	Q8IWE2	Q8IWE2	Q8IWE2	FAM114A1	Protein NOXP20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.421956	1518.82936	0.9841	0.00074833	-0.47658	-0.0003624	0.50752	0.00038593	760.421929528447	18.568	0.097536	18.568	18.532	18.63	0	411	40	1.04982941439551	0.0261323987291064	1.04982941439551	424.309246690312	0	10.5619239344161						281	12	4	NaN	NaN	NaN	3.0637E-06	1	19109	101.64	83.912	1	72349			18320	2203	15457	15912	18320	18320		
SVMDATQIAGLNCLR	15	Unmodified	_SVMDATQIAGLNCLR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.910907	1647.80726	2.8528	0.0023533	1.722	0.0014205	4.5748	0.0037738	825.414365912557	13.832	0.23054	13.832	13.779	14.01	0	360	55	1.08395544855938	0.0360961081802142	1.08395544855938	437.792112024899	0	14.5786355491801						1003	27	5	NaN	NaN	NaN	5.0308E-17	1	22970	204.34	186.6	1	528460			18321	955	15458	15913	18321	18321		
SVNDQPSGNLPFLKPDDIQYFDK	23	Unmodified	_SVNDQPSGNLPFLKPDDIQYFDK_			0	0	1	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	879.765892	2636.27585	1.0954	0.00096366	0.29305	0.00025782	1.3884	0.0012215	880.100683812704	15.686	0.133	15.686	15.624	15.757	0	462	85	1.01562323939346	0.0564681753070051	1.01562323939346	613.362059994112	0	34.1026425814142						1006	16	5	NaN	NaN	NaN	3.2193E-09	1	37382	78.75	77.91	1	235340			18322	343	15459	15914	18322	18322		
SVNESLNNLFITEEDYQALR	20	Unmodified	_SVNESLNNLFITEEDYQALR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.720283	2354.13902	-0.2789	-0.00021914	-0.99673	-0.00078315	-1.2756	-0.0010023	786.05381749295	16.794	0.14188	16.794	16.75	16.892	0	588	46	0.93076847747433	0.0303829256271585	0.93076847747433	562.469203335443	0	18.3605916896548						463	17	5	NaN	NaN	NaN	6.1972E-09	1	36089	146.37	127.36	1	145400			18323	1503	15460	15915	18323	18323		
SVNESLNNLFITEEDYQALR	20	Unmodified	_SVNESLNNLFITEEDYQALR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1178.07679	2354.13902	0.37939	0.00044695	0.28343	0.0003339	0.66282	0.00078086	1178.57820228446	16.794	0.18633	16.794	16.741	16.927	0	69	94	1.27715511956461	0.0614057649103075	1.27715511956461	514.52983068336	0	24.738653385388						1300	22	6	NaN	NaN	NaN	9.7266E-29	1	36090	187.01	167.37	1	463840			18324	1503	15460	15915	18324	18324		
SVNEVMEWMNNVMNAQAK	18	Unmodified	_SVNEVMEWMNNVMNAQAK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.97391	2093.93327	1.8766	0.0019666	-1.3434	-0.0014079	0.53319	0.00055877	1047.97231793585	19.401	0.17738	19.401	19.286	19.463	0	195	79	1.19381749893585	0.0517245376010027	1.19381749893585	481.306112041706	0	20.8535526678784						539	21	5	NaN	NaN	NaN	5.3737E-14	1	33235	146.37	142.21	1	128170			18325	2415	15461	15916	18325	18325		
SVNSLDGLASVLYPGCDTLDK	21	Unmodified	_SVNSLDGLASVLYPGCDTLDK_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1112.54373	2223.07291	1.1061	0.0012306	1.6644	0.0018517	2.7705	0.0030823	1112.54732422375	17.832	0.25711	17.832	17.743	18	0	99	73	1.25735632164274	0.0475627259919114	1.25735632164274	506.728712132076	0	19.1683124922644						1136	29	5	NaN	NaN	NaN	0.00080589	1	34921	38.668	33.574	1	225610			18326	443	15462	15917	18326	18326		
SVPAFIDISEEDQAAELR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVPAFIDISEEDQAAELR_			1	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.49711	2030.97967	0.34738	0.00035311	0.50809	0.00051647	0.85547	0.00086958	1016.99888120716	18.914	0.18619	18.914	18.816	19.002	0	87	94	1.26527909472281	0.0614478436547279	1.26527909472281	510.221120287792	0	24.7787130598667						996	22	5	NaN	NaN	NaN	2.1685E-10	1	32170	113.86	110.61	1	293050			18327	2115	15463	15918	18327	18327		
SVPLAATSMLITQGLISK	18	Unmodified	_SVPLAATSMLITQGLISK_			0	0	0	Q9NX40	Q9NX40	Q9NX40	OCIAD1	OCIA domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.523887	1829.03322	1.1753	0.001076	-0.035096	-3.2131E-05	1.1402	0.0010439	915.524050025329	18.311	0.133	18.311	18.222	18.355	0	216	46	1.17988115188462	0.029896443173731	1.17988115188462	476.141066472326	0	12.0647103428444						454	16	4	NaN	NaN	NaN	1.2226E-10	1	27953	113.86	110.57	1	100930			18328	3094	15464	15919	18328	18328		
SVPLATAPMAEQR	13	Unmodified	_SVPLATAPMAEQR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.858469	1369.70238	1.9784	0.0013569	-0.66067	-0.00045313	1.3177	0.00090377	685.858225751313	7.8374	0.28386	7.8374	7.6511	7.935	0	507	73	0.985374541851584	0.0484146635728933	0.985374541851584	398.64989296445	0	19.5869688443309						1102	33	6	NaN	NaN	NaN	0.0063847	1	14483	60	41.493	1	285980			18329	3452	15465	15920	18329	18329		
SVPTSTVFYPSDGVATEK	18	Unmodified	_SVPTSTVFYPSDGVATEK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.979034	1883.91527	0.82784	0.0005207	0.67083	0.00042194	1.4987	0.00094263	629.313823058219	10.525	0.070962	10.525	10.498	10.569	0	615	31	0.912521036363781	0.0202875850561227	0.912521036363781	552.24854525513	0	12.277842249674						174	9	3	NaN	NaN	NaN	0.031104	1	29236	46.768	34.749	1	37968			18330	888	15466	15921	18330	18330		
SVPTSTVFYPSDGVATEK	18	Unmodified	_SVPTSTVFYPSDGVATEK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.964913	1883.91527	3.0408	0.0028674	0.10663	0.00010055	3.1474	0.0029679	943.466530640849	10.534	0.51432	10.534	10.383	10.897	0	249	178	1.15795408347545	0.117722497954417	1.15795408347545	467.18993018466	0	47.496499546352						5156	59	6	NaN	NaN	NaN	2.8191E-11	1	29237	176.58	155.22	1	4135600			18331	888	15466	15921	18331	18331		
SVQNDSQAIAEVLNQLK	17	Unmodified	_SVQNDSQAIAEVLNQLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.661928	1855.96396	0.24745	0.00015334	-1.1935	-0.00073958	-0.94607	-0.00058624	619.661199849951	17.575	0.13299	17.575	17.53	17.663	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	560.900549864564	0	12.2672855991418						296	16	4	NaN	NaN	NaN	8.3206E-05	1	28610	106.11	97.738	1	105470			18332	718	15467	15922	18332	18332		
SVQNDSQAIAEVLNQLK	17	Unmodified	_SVQNDSQAIAEVLNQLK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.989254	1855.96396	1.5265	0.0014181	-0.9131	-0.00084826	0.61343	0.00056987	929.990715537397	17.583	0.18622	17.583	17.521	17.708	0	267	112	1.14597988355104	0.0737953497751875	1.14597988355104	462.40970530117	0	29.7768629553972						844	22	5	NaN	NaN	NaN	5.7014E-19	1	28611	186.39	159.01	1	322930			18333	718	15467	15922	18333	18333		
SVQTTLQTDEVK	12	Unmodified	_SVQTTLQTDEVK_			0	0	0	O94905;O75477	O94905;O75477	O94905	ERLIN2;ERLIN1	Erlin-2;Erlin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.851364	1347.68817	2.2408	0.0015122	-1.7136	-0.0011564	0.52723	0.00035581	674.85050178694	5.9396	0.29269	5.9396	5.8421	6.1347	0	480	34	1.00353128488872	0.0221762449945386	1.00353128488872	406.06177262772	0	8.97323829192584						593	34	5	NaN	NaN	NaN	0.0078634	1	13834	54.584	35.328	1	271220			18334	395;337	15468	15923	18334	18334		
SVSAFAPICNPVLCPWGK	18	Unmodified	_SVSAFAPICNPVLCPWGK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.99751	2001.98047	0.85526	0.00085697	0.96326	0.00096518	1.8185	0.0018221	1002.50020269299	17.016	0.29263	17.016	16.865	17.158	0	204	109	1.18784641916898	0.0716481467722261	1.18784641916898	479.043659889994	0	28.8948048335362						1679	34	4	NaN	NaN	NaN	2.9502E-10	1	31671	106.11	102.04	1	653470			18335	634	15469	15924	18335	18335		
SVSGTDVQEECR	12	Unmodified	_SVSGTDVQEECR_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.798805	1365.58306	2.3218	0.0015876	-1.7708	-0.0012109	0.551	0.00037678	683.798096248295	3.1198	0.17736	3.1198	3.0843	3.2617	0	573	43	0.940896116921038	0.0283515051757137	0.940896116921038	380.666873318856	0	11.4704255177918						351	21	3	NaN	NaN	NaN	3.0442E-05	1	14353	101.82	92.303	1	72831			18336	1126	15470	15925	18336	18336		
SVSHDLEQLHR	11	Unmodified	_SVSHDLEQLHR_			0	0	0	Q9Y6J9	Q9Y6J9	Q9Y6J9	TAF6L	TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.893347	1319.65821	-0.84445	-0.00037231	-0.61291	-0.00027023	-1.4574	-0.00064254	440.89296924716	4.4322	0.062061	4.4322	4.4145	4.4765	0	882	19	0.730840773481911	0.0123241351954552	0.730840773481911	443.675451474681	0	7.48167924571038						96	8	3	NaN	NaN	NaN	0.00093614	1	12962	50.834	46.632	1	24587			18337	3467	15471	15926	18337	18337		
SVSIQEEQSAPSSEK	15	Unmodified	_SVSIQEEQSAPSSEK_			0	0	0	Q86XZ4	Q86XZ4	Q86XZ4	SPATS2	Spermatogenesis-associated serine-rich protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.383756	1604.75296	2.9626	0.0023801	-2.8691	-0.002305	0.093508	7.5123E-05	803.381412143736	4.2726	0.11527	4.2726	4.2283	4.3435	0	432	46	1.035754240522	0.0301819168183546	1.035754240522	418.418003574698	0	12.1927160759959						289	14	3	NaN	NaN	NaN	3.1985E-24	1	21730	166.71	140.13	1	68447			18338	2190	15472	15927	18338	18338		
SVSLTGAPESVQK	13	Unmodified	_SVSLTGAPESVQK_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.848624	1301.6827	1.721	0.0011218	-0.7829	-0.00051033	0.93809	0.00061149	651.84829545878	6.2855	0.21282	6.2855	6.2323	6.4451	0	540	34	0.963152256458504	0.0222407417065758	0.963152256458504	389.862879284985	0	9.00256375979626						472	25	4	NaN	NaN	NaN	3.1338E-05	1	12404	94.66	75.404	1	315760			18339	2446	15473	15928	18339	18339		
SVSLVGEDERK	11	Unmodified	_SVSLVGEDERK_			0	0	1	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.819867	1217.62518	2.2304	0.0013602	-0.3486	-0.00021258	1.8818	0.0011476	609.819598613484	3.6874	0.15956	3.6874	3.6608	3.8204	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	380.309801724091	0	6.56250318978931						221	19	3	NaN	NaN	NaN	0.07288	1	9956	53.517	42.161	1	50812			18340	2546	15474	15929	18340	18340		
SVSSNVASVSPIPAGSK	17	Unmodified	_SVSSNVASVSPIPAGSK_			0	0	0	Q9Y6G9	Q9Y6G9	Q9Y6G9	DYNC1LI1	Cytoplasmic dynein 1 light intermediate chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.922852	1585.83115	2.1262	0.001688	-3.5316	-0.0028038	-1.4054	-0.0011158	794.421777623861	8.077	0.20408	8.077	7.9793	8.1833	0	405	25	1.05384839605172	0.0160714927508061	1.05384839605172	425.771043428101	0	6.49313152024007						207	24	2	NaN	NaN	NaN	0.071958	1	21141	38.839	12.26	1	60262			18341	3465	15475	15930	18341	18341		
SVSTPSEAGSQDSGDGAVGSR	21	Unmodified	_SVSTPSEAGSQDSGDGAVGSR_			0	0	0	Q13409	Q13409	Q13409	DYNC1I2	Cytoplasmic dynein 1 intermediate chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.935404	1949.85626	4.1266	0.0040272	-3.1685	-0.0030922	0.95806	0.000935	976.434061768586	4.0509	0.133	4.0509	3.98	4.113	0	333	76	1.10198982404297	0.0500748206757269	1.10198982404297	444.500577402104	0	20.1982688206743						589	16	3	NaN	NaN	NaN	2.5975E-11	1	30710	106.79	99.93	1	128030			18342	1661	15476	15931	18342	18342		
SVSTTNIAGHFNDESPLGLR	20	Unmodified	_SVSTTNIAGHFNDESPLGLR_			0	0	0	Q92974	Q92974	Q92974	ARHGEF2	Rho guanine nucleotide exchange factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.687025	2114.03925	-0.099315	-7.0085E-05	-0.33084	-0.00023347	-0.43016	-0.00030356	706.021253906864	11.562	0.079843	11.562	11.527	11.607	0	654	28	0.886123392477847	0.018290507163651	0.886123392477847	535.846415165407	0	11.0604265482639						185	10	4	NaN	NaN	NaN	0.00026147	1	33528	59.171	57.901	1	44225			18343	2449	15477	15932	18343	18343		
SVTDSIRDEYAFLQK	15	Unmodified	_SVTDSIRDEYAFLQK_			0	0	1	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.300219	1770.87883	0.085805	5.0737E-05	-1.3069	-0.0007728	-1.2211	-0.00072206	591.299428928286	12.697	0.1419	12.697	12.662	12.804	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	516.8118104655	0	11.0990148723085						346	17	5	NaN	NaN	NaN	0.052323	1	26444	21.361	18.073	1	128210			18344	79	15478	15933	18344	18344		
SVTEQGAELSNEER	14	Unmodified	_SVTEQGAELSNEER_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.860448	1547.70634	3.0116	0.0023335	-0.048833	-3.7839E-05	2.9627	0.0022957	774.860464041003	4.7425	0.46992	4.7425	4.6805	5.1504	0	477	124	1.0055473068722	0.082737083322821	1.0055473068722	406.343268940214	0	33.4341872035334						2170	54	6	NaN	NaN	NaN	5.6744E-33	1	19966	209.43	184.74	1	2158100			18345	1427	15479	15934	18345	18345		
SVTGEIVLITGAGHGIGR	18	Unmodified	_SVTGEIVLITGAGHGIGR_			0	0	0	Q8NBQ5	Q8NBQ5	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.986318	1735.95808	1.6238	0.0014111	0.77409	0.00067267	2.3979	0.0020837	868.986804854052	13.265	0.097543	13.265	13.221	13.318	0	198	28	1.1918274123006	0.0179132408204183	1.1918274123006	481.156001332949	0	7.23180490321926						205	12	4	NaN	NaN	NaN	4.2122E-10	1	25500	123.92	114.18	1	44542			18346	2293	15480	15935	18346	18346		
SVTHFDSLAVIDIPGADTLDK	21	Unmodified	_SVTHFDSLAVIDIPGADTLDK_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.714469	2213.12158	-0.14478	-0.00010695	-2.783	-0.0020558	-2.9278	-0.0021628	739.04722956527	15.987	0.11525	15.987	15.952	16.067	0	606	43	0.918606045818476	0.0283986853568062	0.918606045818476	555.326770214807	0	17.1679146782561						420	14	4	NaN	NaN	NaN	0.00050011	1	34829	63.947	63.867	1	116300			18347	260	15481	15936	18347	18347		
SVTSNQSDGTQESCESPDVLDR	22	Unmodified	_SVTSNQSDGTQESCESPDVLDR_			0	0	0	Q9UGV2	Q9UGV2	Q9UGV2	NDRG3	Protein NDRG3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1206.0168	2410.01904	2.1192	0.0025557	-0.4654	-0.00056128	1.6538	0.0019945	1206.51757045325	6.8264	0.062051	6.8264	6.7998	6.8619	0	114	73	1.24744674793813	0.0475757621737924	1.24744674793813	502.492761102573	0	19.1643259608337						321	8	4	NaN	NaN	NaN	1.5383E-16	1	36400	131.57	128.49	1	56774			18348	3206	15482	15937	18348	18348		
SVTWISAGLAEAGHLEGHCLVR	22	Unmodified	_SVTWISAGLAEAGHLEGHCLVR_			0	0	0	Q8NEZ5	Q8NEZ5	Q8NEZ5	FBXO22	F-box only protein 22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.402343	2362.1852	1.7084	0.0013469	2.1377	0.0016854	3.8461	0.0030323	788.404464294185	15.18	0.0798	15.18	15.136	15.216	0	354	25	1.08796502040166	0.0160360785549387	1.08796502040166	657.450909331067	0	9.69050863800442						161	10	3	NaN	NaN	NaN	0.00034001	1	36152	28.664	27.04	1	42366			18349	2314	15483	15938	18349	18349		
SVVAPPGAPK	10	Unmodified	_SVVAPPGAPK_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.77146	921.528367	-0.42041	-0.00019413	0.82702	0.0003819	0.40662	0.00018776	461.771821120286	4.5563	0.15959	4.5563	4.4677	4.6273	0	810	34	0.78005493425781	0.0225203682551777	0.78005493425781	317.113159436672	0	9.1551310240369						272	19	3	NaN	NaN	NaN	0.045919	1	2738	36.211	26.818	1	81283			18350	709	15484	15939	18350	18350		
SVVCSDVEQQVIVIEEEK	18	Unmodified	_SVVCSDVEQQVIVIEEEK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.51973	2089.0249	1.858	0.0019425	-3.9191	-0.0040975	-2.0611	-0.0021549	1046.01648296203	14.178	0.12413	14.178	14.125	14.249	0	171	43	1.20972836110953	0.0278287321419277	1.20972836110953	487.728381904061	0	11.2197605134885						432	15	5	NaN	NaN	NaN	1.3322E-10	1	33167	101.52	93.155	1	108820			18351	2110	15485	15940	18351	18351		
SVVCSDVEQQVIVIEEEK	18	Unmodified	_SVVCSDVEQQVIVIEEEK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.34891	2089.0249	0.33729	0.00023521	-0.54607	-0.0003808	-0.20878	-0.00014559	697.682324149639	14.178	0.070918	14.178	14.143	14.214	0	558	22	0.951016745717027	0.014164957610621	0.951016745717027	575.132881411988	0	8.56634010112293						158	9	4	NaN	NaN	NaN	0.0013189	1	33170	53.363	48.529	1	31425			18352	2110	15485	15940	18352	18352		
SVVDSLDIESMTIEDEYSGPK	21	Unmodified	_SVVDSLDIESMTIEDEYSGPK_			0	0	0	P53041	P53041	P53041	PPP5C	Serine/threonine-protein phosphatase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1157.53577	2313.05699	0.20956	0.00024257	-0.33203	-0.00038434	-0.12247	-0.00014176	1158.03761661498	16.608	0.079787	16.608	16.564	16.644	0	99	37	1.25735632164274	0.0237846096492644	1.25735632164274	506.606261151102	0	9.58314835655312						188	10	3	NaN	NaN	NaN	2.3751E-06	1	35743	77.431	76.679	1	30535			18353	1230	15486	15941	18353	18353		
SVVGLDVGSQSCYIAVAR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SVVGLDVGSQSCYIAVAR_			1	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.985657	1921.95676	0.29751	0.0002862	0.16433	0.00015808	0.46184	0.00044428	962.487330778959	16.493	0.13296	16.493	16.448	16.581	0	75	79	1.27319752866042	0.0514910115870786	1.27319752866042	513.611891807498	0	20.7716361970529						744	16	4	NaN	NaN	NaN	8.4606E-15	1	30104	115.79	112.5	1	146830			18354	2415	15487	15942	18354	18354		
SVVLMSHLGRPDGVPMPDK	19	Unmodified	_SVVLMSHLGRPDGVPMPDK_			0	0	1	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	509.517039	2034.03905	0.18542	9.4477E-05	-0.53976	-0.00027502	-0.35433	-0.00018054	509.767278790466	10.312	0.23052	10.312	10.206	10.436	0	675	67	0.871889544407995	0.0447691415527759	0.871889544407995	703.163339066885	0	36.1055127490748						894	27	5	NaN	NaN	NaN	0.071863	1	32229	16.687	0	1	310990			18355	484	15488	15943	18355	18355		
SVVLMSHLGRPDGVPMPDK	19	Unmodified	_SVVLMSHLGRPDGVPMPDK_			0	0	1	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.020294	2034.03905	1.203	0.00081685	-0.43135	-0.0002929	0.77162	0.00052395	679.354412910444	10.312	0.15962	10.312	10.223	10.383	0	585	85	0.932794566565362	0.056671649078182	0.932794566565362	564.213504358384	0	34.2786191839693						792	19	4	NaN	NaN	NaN	4.1069E-07	1	32230	52.662	24.992	1	173310			18356	484	15488	15943	18356	18356		
SVVLMSHLGRPDGVPMPDK	19	Unmodified	_SVVLMSHLGRPDGVPMPDK_			0	0	1	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1018.0268	2034.03905	0.81809	0.00083284	0.60245	0.00061331	1.4205	0.0014462	1018.52929076509	10.33	0.044343	10.33	10.294	10.339	0	102	16	1.25537494996371	0.00990957370460754	1.25537494996371	506.22212502149	0	3.99597383948799						43	6	3	NaN	NaN	NaN	0.051855	1	32231	34.338	15.941	1	4739.9			18357	484	15488	15943	18357	18357		
SVVNMEWDK	9	Unmodified	_SVVNMEWDK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.260599	1106.50665	0.49962	0.00027692	-0.75395	-0.00041789	-0.25433	-0.00014096	554.260474902836	9.1592	0.20396	9.1592	9.044	9.2479	0	675	73	0.871889544407995	0.0487848675344291	0.871889544407995	353.574696367766	0	19.7835779044001						672	24	4	NaN	NaN	NaN	0.00011462	1	6881	131.22	99.273	1	368580			18358	565	15489	15944	18358	18358		
SVVTSIFGVK	10	Unmodified	_SVVTSIFGVK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.8055	1035.59645	-0.082225	-4.2659E-05	-2.6181	-0.0013583	-2.7003	-0.0014009	518.80431202177	13.637	0.13298	13.637	13.575	13.708	0	696	28	0.857641857947968	0.0183260879062385	0.857641857947968	348.089683878602	0	7.43797901991053						231	16	3	NaN	NaN	NaN	0.034795	1	5135	40.502	35.194	1	80697			18359	1036	15490	15945	18359	18359		
SVYAHFPINVVIQENGSLVEIR	22	Unmodified	_SVYAHFPINVVIQENGSLVEIR_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.779696	2483.31726	0.18603	0.00015418	-1.3651	-0.0011314	-1.1791	-0.00097722	829.112704395005	16.98	0.088667	16.98	16.954	17.043	0	540	37	0.963152256458504	0.0242542357032265	0.963152256458504	581.861316022485	0	14.6525135675753						232	11	3	NaN	NaN	NaN	5.0424E-06	1	36746	69.613	65.016	1	58048			18360	943	15491	15946	18360	18360		
SWCPDCVQAEPVVR	14	Unmodified	_SWCPDCVQAEPVVR_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.887432	1701.76031	2.8651	0.0024408	-0.96199	-0.00081951	1.9031	0.0016213	851.887093011119	9.842	0.22165	9.842	9.78	10.002	0	387	64	1.06589869032374	0.0421673255783088	1.06589869032374	430.385467908575	0	17.026199876427						1200	26	6	NaN	NaN	NaN	1.2294E-11	1	24544	186.27	166.09	1	742060			18361	2704	15492	15947	18361	18361		
SWDIFFR	7	Unmodified	_SWDIFFR_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.742702	969.470852	-1.6708	-0.00081158	-0.10675	-5.1854E-05	-1.7775	-0.00086343	485.742625073541	16.289	0.16845	16.289	16.245	16.413	0	738	37	0.829104889055312	0.024487471345556	0.829104889055312	336.808350382739	0	9.94757712542093						326	20	3	NaN	NaN	NaN	0.00045578	1	3615	105.22	90.552	1	116340			18362	1526	15493	15948	18362	18362		
SWEEQMIEVGR	11	Unmodified	_SWEEQMIEVGR_			0	0	0	Q00059	Q00059	Q00059	TFAM	Transcription factor A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.319177	1362.6238	0.73815	0.00050366	-0.25429	-0.00017351	0.48386	0.00033015	682.319003837374	12.157	0.1153	12.157	12.112	12.227	0	546	40	0.959108205975751	0.0262881524128359	0.959108205975751	388.043542479609	0	10.6358674901992						396	14	4	NaN	NaN	NaN	2.1525E-05	1	14271	118.91	92.452	1	171650			18363	1495	15494	15949	18363	18363		
SWEEQMIEVGRK	12	Unmodified	_SWEEQMIEVGRK_			0	0	1	Q00059	Q00059	Q00059	TFAM	Transcription factor A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.913531	1490.71876	-1.6323	-0.00081274	-1.3837	-0.00068897	-3.016	-0.0015017	497.912621187342	9.8952	0.079814	9.8952	9.8598	9.9396	0	783	31	0.798467866007927	0.0204431578959955	0.798467866007927	484.154212531277	0	12.3957912824634						179	10	3	NaN	NaN	NaN	0.013996	1	18247	57.888	53.685	1	47374			18364	1495	15495	15950	18364	18364		
SWFEGQGLAGK	11	Unmodified	_SWFEGQGLAGK_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.293288	1178.57202	1.1241	0.00066352	3.0945	0.0018267	4.2186	0.0024902	590.294750007109	10.179	0.15963	10.179	10.108	10.268	0	591	25	0.928742107665821	0.01621208273842	0.928742107665821	376.346485772542	0	6.56948825222582						212	19	2	NaN	NaN	NaN	0.0056316	1	8842	52.591	36.134	1	80773			18365	2886	15496	15951	18365	18365		
SWFEPLVEDMQR	12	Unmodified	_SWFEPLVEDMQR_			0	0	0	CON__Q03247;P02649	CON__Q03247	CON__Q03247	APOE	Apolipoprotein E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.861209	1535.70786	0.52461	0.00040335	0.19619	0.00015084	0.7208	0.0005542	768.861375686563	16.803	0.15961	16.803	16.759	16.918	0	444	52	1.02770517576159	0.0342061750020484	1.02770517576159	415.326065137589	0	13.8237272732235						614	19	5	NaN	NaN	NaN	0.00063853	1	19595	58.889	53.393	1	203060		+	18366	35	15497	15952	18366	18366		
SWGIDCLFEK	10	Unmodified	_SWGIDCLFEK_			0	0	0	P51580	P51580	P51580	TPMT	Thiopurine S-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.794806	1253.57506	0.18502	0.00011616	-1.1667	-0.00073245	-0.98167	-0.00061629	627.794228133142	16.466	0.1064	16.466	16.422	16.528	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	380.187540959719	0	6.56039349750012						227	13	4	NaN	NaN	NaN	0.0032022	1	11017	61.48	40.205	1	60861			18367	1192	15498	15953	18367	18367		
SWHDVQVSSAYVK	13	Unmodified	_SWHDVQVSSAYVK_			0	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.372798	1504.73104	2.3812	0.0017939	-4.3576	-0.0032829	-1.9764	-0.001489	753.871156825194	7.7753	0.21287	7.7753	7.7221	7.935	0	432	37	1.035754240522	0.0241471979634897	1.035754240522	418.655923069764	0	9.76039204807716						335	25	4	NaN	NaN	NaN	0.00033264	1	18651	83.214	77.718	1	117920			18368	199	15499	15954	18368	18368		
SWHDVQVSSAYVK	13	Unmodified	_SWHDVQVSSAYVK_			0	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.584291	1504.73104	0.70061	0.00035212	0.95552	0.00048023	1.6561	0.00083234	502.584424073906	7.7753	0.097584	7.7753	7.7398	7.8374	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	526.161248945341	0	12.3380065114534						253	12	4	NaN	NaN	NaN	0.020489	1	18653	31.425	28.546	1	90568			18369	199	15499	15954	18369	18369		
SWIEEQAMGSFLSVAK	16	Unmodified	_SWIEEQAMGSFLSVAK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.96255	1781.86582	-2.4977	-0.001486	-5.262	-0.0031307	-7.7596	-0.0046167	595.293476261612	15.624	0.070922	15.624	15.597	15.668	0	774	16	0.804600385996946	0.010218022892906	0.804600385996946	487.139667540045	0	6.186430384071						95	9	3	NaN	NaN	NaN	0.067586	1	26720	1.588	0	1	17164			18370	880	15500	15955	18370	18370		
SWIEEQAMGSFLSVAK	16	Unmodified	_SWIEEQAMGSFLSVAK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.940187	1781.86582	1.3908	0.0012405	1.5491	0.0013817	2.9399	0.0026222	892.441956776079	17.92	0.16843	17.92	17.832	18	0	276	49	1.13998907770044	0.0319663599333924	1.13998907770044	460.134250855636	0	12.9025947425772						457	20	4	NaN	NaN	NaN	2.6783E-09	1	26722	86.729	77.467	1	123100			18371	880	15500	15955	18371	18371		
SWLFGINK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SWLFGINK_			1	0	0	Q9NVI7	Q9NVI7	Q9NVI7	ATAD3A	ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.77146	1005.52837	-2.0235	-0.0010194	2.1252	0.0010706	0.10171	5.1237E-05	503.77255480609	19.286	0.079814	19.286	19.25	19.33	0	714	28	0.845418525735192	0.0183439172239627	0.845418525735192	343.263167726766	0	7.44813479139128						172	10	3	NaN	NaN	NaN	0.010172	1	4409	66.087	55.259	1	50477			18372	3068	15501	15956	18372	18372		
SWLFGVNK	8	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))SWLFGVNK_			1	0	0	Q5T9A4	Q5T9A4	Q5T9A4	ATAD3B	ATPase family AAA domain-containing protein 3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.763635	991.512717	-1.5701	-0.00077997	-0.32787	-0.00016287	-1.898	-0.00094284	496.763393356621	18.506	0.097599	18.506	18.461	18.559	0	723	22	0.839303037468863	0.0142734399244295	0.839303037468863	340.845139880344	0	5.79651497781731						118	12	2	NaN	NaN	NaN	0.0020241	1	4090	67.903	35.775	1	28533			18373	1996	15502	15957	18373	18373		
SWLHNDLK	8	Unmodified	_SWLHNDLK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.764166	1011.51378	0.3554	0.0001801	2.1435	0.0010863	2.4989	0.0012664	506.764830941531	5.8155	0.16846	5.8155	5.7623	5.9307	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	355.634530003345	0	6.6058004438953						250	20	3	NaN	NaN	NaN	0.023971	1	4545	58.286	37.938	1	62034			18374	877	15503	15958	18374	18374		
SWLLPVIR	8	Unmodified	_SWLLPVIR_			0	0	0	Q5JTH9	Q5JTH9	Q5JTH9	RRP12	RRP12-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.30547	982.596387	-0.63366	-0.00031195	-1.5633	-0.00076965	-2.197	-0.0010816	492.304745353695	16.191	0.15074	16.191	16.138	16.289	0	687	61	0.863749705078866	0.040738799082341	0.863749705078866	350.816610530198	0	16.5462834049045						464	18	3	NaN	NaN	NaN	0.00099046	1	3902	104.76	81.189	1	145670			18375	1968	15504	15959	18375	18375		
SWLPQNCTLVDMK	13	Unmodified	_SWLPQNCTLVDMK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.383994	1590.75343	2.375	0.0018914	0.24735	0.00019699	2.6224	0.0020884	796.384295540372	13.558	0.26599	13.558	13.442	13.708	0	393	73	1.0618830335572	0.0481746253891453	1.0618830335572	429.00565430836	0	19.4627713533547						1060	31	5	NaN	NaN	NaN	0.00019321	1	21295	81.48	75.614	1	479300			18376	802	15505	15960	18376	18376		
SWLPQNCTLVDMK	13	Oxidation (M)	_SWLPQNCTLVDM(Oxidation (M))K_	SWLPQNCTLVDM(1)K	SWLPQNCTLVDM(52)K	0	1	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.381451	1606.74835	1.7045	0.001371	0.14038	0.00011292	1.8448	0.001484	804.883905411848	11.412	0.14193	11.412	11.341	11.483	0	387	10	1.06589869032374	0.00602390056039281	1.06589869032374	430.59099686454	0	2.43347456081841						102	17	3	NaN	NaN	NaN	0.0011444	1	21804	51.531	44.84	1	26481			18377	802	15505	15961	18377	18377	265	
SWMEGLTLQDYSEHCK	16	Unmodified	_SWMEGLTLQDYSEHCK_			0	0	0	O00487	O00487	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.957359	1982.85025	0.95371	0.00063131	-1.2073	-0.00079916	-0.25356	-0.00016784	662.291114699787	12.706	0.12416	12.706	12.662	12.786	0	591	34	0.928742107665821	0.0222931596374992	0.928742107665821	561.860528555338	0	13.4866787601287						441	15	5	NaN	NaN	NaN	0.00036485	1	31325	77.157	65.139	1	150160			18378	85	15506	15962	18378	18378		
SWMEGLTLQDYSEHCK	16	Unmodified	_SWMEGLTLQDYSEHCK_			0	0	0	O00487	O00487	O00487	PSMD14	26S proteasome non-ATPase regulatory subunit 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.4324	1982.85025	1.5313	0.0015197	-1.1359	-0.0011273	0.39539	0.0003924	992.933180799838	12.715	0.10642	12.715	12.671	12.777	0	93	49	1.26131825079847	0.0316997848796292	1.26131825079847	508.707734330878	0	12.7849777284076						534	13	5	NaN	NaN	NaN	2.4431E-12	1	31326	135.21	127.24	1	145770			18379	85	15506	15962	18379	18379		
SWMGYELPFDR	11	Unmodified	_SWMGYELPFDR_			0	0	0	P53701	P53701	P53701	HCCS	Cytochrome c-type heme lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.818812	1399.62307	0.36067	0.00025276	-0.77972	-0.00054644	-0.41905	-0.00029368	700.818299429248	16.227	0.11525	16.227	16.174	16.289	0	525	40	0.973257487423603	0.0262590697317363	0.973257487423603	393.663616060399	0	10.6212800605748						319	14	3	NaN	NaN	NaN	0.00124	1	15431	51.872	48.265	1	77197			18380	1244	15507	15963	18380	18380		
SWNDCLNK	8	Unmodified	_SWNDCLNK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.729466	1035.44438	0.89663	0.00046511	0.11956	6.2022E-05	1.0162	0.00052713	518.729532249673	5.5937	0.16853	5.5937	5.5494	5.7179	0	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	343.956401662096	0	8.27075342569384						243	20	2	NaN	NaN	NaN	0.007951	1	5117	60.589	45.091	1	85258			18381	3430	15508	15964	18381	18381		
SWQGLDEVVR	10	Unmodified	_SWQGLDEVVR_			0	0	0	Q9H267	Q9H267	Q9H267	VPS33B	Vacuolar protein sorting-associated protein 33B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.80402	1187.59349	0.71073	0.00042275	-0.19384	-0.0001153	0.51689	0.00030745	594.803682716011	11.11	0.088679	11.11	11.075	11.163	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	372.206430861749	0	8.2168305140296						116	11	2	NaN	NaN	NaN	0.04003	1	9087	39.039	19.783	1	30059			18382	2861	15509	15965	18382	18382		
SWQGTADGGMMDR	13	Unmodified	_SWQGTADGGMMDR_			0	0	0	Q15424	Q15424	Q15424	SAFB	Scaffold attachment factor B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.290093	1410.56563	1.4165	0.0010004	0.47644	0.00033651	1.8929	0.001337	706.290896884094	7.0925	0.12424	7.0925	7.0481	7.1723	0	531	40	0.969216233931596	0.0262663358758335	0.969216233931596	391.999249193839	0	10.623412590432						354	15	4	NaN	NaN	NaN	8.6994E-05	1	15759	95.138	87.137	1	97116			18383	1846	15510	15966	18383	18383		
SWVGFSGGQHHTVCMDSEGK	20	Unmodified	_SWVGFSGGQHHTVCMDSEGK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.9862	2204.93677	0.97656	0.00071873	1.0737	0.00079023	2.0503	0.001509	736.321419191062	7.1014	0.13293	7.1014	7.066	7.1989	0	561	34	0.948993180460448	0.0222592210224549	0.948993180460448	573.710025593713	0	13.4567228989913						400	16	5	NaN	NaN	NaN	5.0566E-06	1	34731	70.552	67.047	1	118370			18384	758	15511	15967	18384	18384		
SWVNQMESQTGEASK	15	Unmodified	_SWVNQMESQTGEASK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.377951	1680.74135	2.4285	0.0020433	0.18547	0.00015605	2.614	0.0021993	841.377999118717	8.9109	0.17749	8.9109	8.8399	9.0174	0	399	85	1.0578662689527	0.0562037435134362	1.0578662689527	427.185306321839	0	22.6960761429618						1131	21	5	NaN	NaN	NaN	4.9214E-24	1	23929	231.22	209.22	1	534040			18385	1095	15512	15968	18385	18385		
SWVQCGISMK	10	Unmodified	_SWVQCGISMK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.283551	1194.55255	0.27412	0.000164	4.0597	0.0024288	4.3338	0.0025928	598.285556596136	9.3278	0.14191	9.3278	9.2834	9.4253	0	561	37	0.948993180460448	0.0242844683109597	0.948993180460448	384.493131876197	0	9.83907099553528						297	17	4	NaN	NaN	NaN	0.01032	1	9277	60.892	38.506	1	68669			18386	2110	15513	15969	18386	18386		
SWWDAVCTLIHR	12	Unmodified	_SWWDAVCTLIHR_			0	0	0	P49792;A6NKT7;Q7Z3J3;Q99666;O14715;P0DJD0;P0DJD1	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4;RGPD5;RGPD8;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.253999	1542.74017	-2.1912	-0.001129	2.9352	0.0015124	0.74403	0.00038337	515.255513182325	18.639	0.035459	18.639	18.63	18.665	0	762	16	0.812773098473386	0.0102137591879432	0.812773098473386	492.675544757671	0	6.19123514471033						56	5	3	NaN	NaN	NaN	0.041444	1	19807	33.723	31.052	1	9653.1			18387	1151;19	15514	15970	18387	18387		
SWWTLPGK	8	Unmodified	_SWWTLPGK_			0	0	0	P54852	P54852	P54852	EMP3	Epithelial membrane protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.758352	973.502152	-0.98291	-0.00047942	-0.1842	-8.9846E-05	-1.1671	-0.00056927	487.758276476953	13.185	0.14188	13.185	13.132	13.274	0	741	49	0.827064408645228	0.0326545061088502	0.827064408645228	335.959986151235	0	13.2645139912079						383	17	3	NaN	NaN	NaN	0.017139	1	3707	46.835	32.3	1	140480			18388	1258	15515	15971	18388	18388		
SYCAEIAHNVSSK	13	Unmodified	_SYCAEIAHNVSSK_			0	0	0	P62910	P62910	P62910	RPL32	60S ribosomal protein L32	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.229519	1464.66673	-0.14464	-7.076E-05	0.32267	0.00015786	0.17804	8.7102E-05	489.229826005597	4.9997	0.2128	4.9997	4.9553	5.1681	0	786	37	0.796423123669906	0.0245386198343958	0.796423123669906	482.993259302626	0	14.8815216690206						568	25	5	NaN	NaN	NaN	0.00024992	1	17407	43.306	40.427	1	295980			18389	1414	15517	15972	18389	18389		
SYCAEIAHNVSSK	13	Unmodified	_SYCAEIAHNVSSK_			0	0	0	P62910	P62910	P62910	RPL32	60S ribosomal protein L32	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.34064	1464.66673	3.063	0.0022462	-0.38098	-0.00027939	2.682	0.0019668	733.34145255429	4.9997	0.50543	4.9997	4.8578	5.3632	0	441	142	1.02971785871157	0.0947794768020717	1.02971785871157	416.319727416864	0	38.3197840195992						1464	58	6	NaN	NaN	NaN	2.0523E-24	1	17408	197.3	185.34	1	1016800			18390	1414	15517	15972	18390	18390		
SYCNDQSTGDIK	12	Unmodified	_SYCNDQSTGDIK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.293356	1386.57216	2.3811	0.0016532	-1.5033	-0.0010437	0.87784	0.00060948	694.292593373961	3.1818	0.27489	3.1818	3.1375	3.4124	0	552	46	0.955063035883597	0.0303408835335462	0.955063035883597	386.339889049974	0	12.2734239915208						527	32	4	NaN	NaN	NaN	4.4809E-11	1	15033	117.45	111.18	1	151760			18391	481	15518	15973	18391	18391		
SYDFEFMQVEK	11	Unmodified	_SYDFEFMQVEK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.815935	1421.61732	1.1895	0.00084669	0.16433	0.00011697	1.3538	0.00096366	711.815987895549	13.673	0.14186	13.673	13.629	13.77	-1.7764E-15	483	37	1.00151498427745	0.0241972834927519	1.00151498427745	405.031896660755	0	9.78584622393646						409	17	5	NaN	NaN	NaN	6.995E-08	1	16128	135.63	131.43	1	196890			18392	334	15519	15974	18392	18392		
SYDSLPNFTAADCLR	15	Unmodified	_SYDSLPNFTAADCLR_			0	0	0	Q658Y4	Q658Y4	Q658Y4	FAM91A1	Protein FAM91A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.396144	1728.77773	2.615	0.002263	1.2209	0.0010565	3.8359	0.0033195	865.397595181092	13.567	0.062074	13.567	13.531	13.593	0	363	37	1.08195024817156	0.0240541201161169	1.08195024817156	436.811552525287	0	9.71127606866145						169	8	3	NaN	NaN	NaN	0.0034094	1	25287	47.57	46.832	1	27870			18393	2018	15520	15975	18393	18393		
SYDVPPPPMEPDHPFYSNISK	21	Unmodified	_SYDVPPPPMEPDHPFYSNISK_			0	0	0	P18669;Q8N0Y7	P18669	P18669	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1209.05955	2416.10455	0.48113	0.00058172	0.6573	0.00079471	1.1384	0.0013764	1209.56214063176	11.944	0.24836	11.944	11.882	12.13	0	78	79	1.27121832677567	0.0514910115870786	1.27121832677567	512.060956415347	0	20.7411552246493						1017	29	4	NaN	NaN	NaN	0.0015237	1	36424	38.668	29.537	1	180850			18394	757	15521	15976	18394	18394		
SYDVPPPPMEPDHPFYSNISK	21	Unmodified	_SYDVPPPPMEPDHPFYSNISK_			0	0	0	P18669;Q8N0Y7	P18669	P18669	PGAM1;PGAM4	Phosphoglycerate mutase 1;Probable phosphoglycerate mutase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	806.375459	2416.10455	1.1496	0.00092703	0.19857	0.00016013	1.3482	0.0010872	806.710027594783	11.926	0.50549	11.926	11.82	12.325	0	504	151	0.987393073566096	0.101087573319211	0.987393073566096	596.598035300254	0	61.0786618319078						6867	58	6	NaN	NaN	NaN	1.1178E-07	1	36425	107.46	87.168	1	2315000			18395	757	15521	15976	18395	18395		
SYDYDLIIIGGGSGGLAAAK	20	Unmodified	_SYDYDLIIIGGGSGGLAAAK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.00183	1939.98911	0.87535	0.00084997	0.036415	3.5359E-05	0.91176	0.00088533	971.503533945693	16.041	0.097525	16.041	15.996	16.094	0	63	82	1.28111162701928	0.0534677767108933	1.28111162701928	516.770029301476	0	21.5676323240156						557	12	4	NaN	NaN	NaN	8.9339E-11	1	30513	91.032	83.456	1	131040			18396	1914	15522	15977	18396	18396		
SYDYDLIIIGGGSGGLAAAK	20	Unmodified	_SYDYDLIIIGGGSGGLAAAK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.00183	1939.98911	1.9024	0.0018472	0.2558	0.00024839	2.1582	0.0020956	971.503955586675	16.032	0.18619	16.032	15.961	16.147	0	222	70	1.17589687683038	0.0458097515815539	1.17589687683038	474.328895102706	0	18.478566684502						507	22	5	NaN	NaN	NaN	9.9164E-16	1	30515	137.4	129.83	1	156970			18397	1914	15522	15977	18397	18397		
SYDYEAWAK	9	Unmodified	_SYDYEAWAK_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.750921	1131.48729	0.77712	0.00044043	2.1263	0.0012051	2.9034	0.0016455	566.751960306539	8.831	0.088665	8.831	8.8044	8.8931	0	612	25	0.914549654013882	0.016227817631378	0.914549654013882	370.773762678065	0	6.57902933627713						120	11	2	NaN	NaN	NaN	0.01024	1	7564	37.722	31.492	1	26690			18398	2909	15523	15978	18398	18398		
SYEAQDPEIASLSGK	15	Unmodified	_SYEAQDPEIASLSGK_			0	0	0	Q99622	Q99622	Q99622	C12orf57	Protein C10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.883392	1593.75223	1.9511	0.0015567	-1.9889	-0.0015869	-0.037809	-3.0167E-05	798.383684755076	8.6891	0.16868	8.6891	8.6268	8.7955	0	411	58	1.04982941439551	0.0381777082454866	1.04982941439551	424.129056558151	0	15.4237204232214						440	20	3	NaN	NaN	NaN	1.1387E-11	1	21388	121.86	115.49	1	109820			18399	2659	15524	15979	18399	18399		
SYEGEEDTPMGLLLGGVK	18	Unmodified	_SYEGEEDTPMGLLLGGVK_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.958774	1893.90299	1.0038	0.00095156	3.4053	0.0032281	4.4091	0.0041796	948.464020522369	18.027	0.11528	18.027	17.965	18.08	0	231	37	1.16991841121525	0.0239253701755411	1.16991841121525	471.998867029795	0	9.65259415346196						269	14	3	NaN	NaN	NaN	2.8177E-07	1	29466	65.408	62.119	1	51455			18400	2572	15525	15980	18400	18400		
SYELPDGQVITIGNER	16	Unmodified	_SYELPDGQVITIGNER_			0	0	0	P60709;Q6S8J3;A5A3E0;Q9BYX7;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;POTEE;POTEF;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.949598	1789.88464	1.9699	0.0017649	-3.4449	-0.0030865	-1.4751	-0.0013216	895.947170761431	14.045	0.18616	14.045	13.974	14.161	0	297	58	1.12600091227925	0.0380097163166782	1.12600091227925	454.472496691081	0	15.3413469603623						395	22	2	NaN	NaN	NaN	0.00010664	1	26967	72.327	63.952	1	203970			18401	1310;1436;1444;1955	15526	15981	18401	18401		
SYELPDGQVITIGNER	16	Unmodified	_SYELPDGQVITIGNER_			0	0	0	P60709;Q6S8J3;A5A3E0;Q9BYX7;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;POTEE;POTEF;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.949598	1789.88464	2.8006	0.0025092	-1.1712	-0.0010493	1.6294	0.0014599	895.948682412603	12.733	0.24831	12.733	12.644	12.893	0	318	85	1.11199926528787	0.0560567810413077	1.11199926528787	448.821193712125	0	22.6254388541396						1028	29	5	NaN	NaN	NaN	1.4381E-06	1	26973	111.98	103.17	1	611640			18402	1310;1436;1444;1955	15526	15981	18402	18402		
SYELPDGQVITIGNER	16	Unmodified	_SYELPDGQVITIGNER_			0	0	0	P60709;Q6S8J3;A5A3E0;Q9BYX7;P63261;P68133;P68032;P62736;P63267;Q562R1	P60709;P63261;P68133;Q562R1	P60709	ACTB;POTEE;POTEF;POTEKP;ACTG1;ACTA1;ACTC1;ACTA2;ACTG2;ACTBL2	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;POTE ankyrin domain family member E;POTE ankyrin domain family member F;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle;Beta-actin-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.949598	1789.88464	2.811	0.0025185	1.6342	0.0014642	4.4452	0.0039827	895.951110232876	13.753	0.59409	13.753	13.513	14.107	0	300	199	1.12400150285141	0.132280093389743	1.12400150285141	453.665484411226	0	53.3904202915938						6652	68	6	NaN	NaN	NaN	1.7341E-33	1	26974	230.5	217.91	1	13314000			18403	1310;1436;1444;1955	15526	15981	18403	18403		
SYESQIEVMAAEVAK	15	Unmodified	_SYESQIEVMAAEVAK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.90327	1653.79199	1.6807	0.0013914	-0.020603	-1.7057E-05	1.6601	0.0013744	827.903858576115	15.384	0.070956	15.384	15.349	15.42	0	381	49	1.06991323971056	0.0321031230176227	1.06991323971056	432.107658121801	0	12.9655422427464						234	9	3	NaN	NaN	NaN	6.9873E-08	1	23151	94.507	70.703	1	49210			18404	423	15527	15982	18404	18404		
SYESSEDCSEAAGSPAR	17	Unmodified	_SYESSEDCSEAAGSPAR_			0	0	0	Q6P6C2	Q6P6C2	Q6P6C2	ALKBH5	RNA demethylase ALKBH5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.860319	1801.70609	2.5865	0.0023326	0.59385	0.00053557	3.1803	0.0028682	901.86117571255	3.4834	0.035481	3.4834	3.4746	3.51	0	366	13	1.07994477139643	0.00802135444019658	1.07994477139643	435.861479738624	0	3.2373872335076						24	5	2	NaN	NaN	NaN	0.00098503	1	27248	66.619	62.092	1	3962.6			18405	2068	15528	15983	18405	18405		
SYETLVDFDNHLDDIR	16	Unmodified	_SYETLVDFDNHLDDIR_			0	0	0	O43402	O43402	O43402	EMC8	ER membrane protein complex subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.455244	1950.89594	1.1625	0.0011351	0.50401	0.00049215	1.6665	0.0016273	976.455505481049	14.116	0.062071	14.116	14.081	14.143	0	141	37	1.2295923935727	0.0238237664367487	1.2295923935727	495.968696174616	0	9.6095604034038						159	8	3	NaN	NaN	NaN	1.3528E-09	1	30729	112.95	106.2	1	31431			18406	200	15529	15984	18406	18406		
SYFSQYGEVVDCVIMK	16	Unmodified	_SYFSQYGEVVDCVIMK_			0	0	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.944612	1923.87467	0.75801	0.00072992	2.5597	0.0024648	3.3177	0.0031947	963.448460204292	16.821	0.15072	16.821	16.768	16.918	0	225	43	1.17390432875292	0.0278975958316861	1.17390432875292	473.553310206818	0	11.253897382712						478	18	5	NaN	NaN	NaN	3.38E-06	1	30141	93.772	90.878	1	170800			18407	2517	15530	15985	18407	18407		
SYFSQYGEVVDCVIMK	16	Oxidation (M)	_SYFSQYGEVVDCVIM(Oxidation (M))K_	SYFSQYGEVVDCVIM(1)K	SYFSQYGEVVDCVIM(86)K	0	1	0	Q96EP5	Q96EP5	Q96EP5	DAZAP1	DAZ-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.942069	1939.86959	2.0655	0.0020054	3.7692	0.0036597	5.8347	0.0056652	971.444799943661	15.775	0.15073	15.775	15.712	15.863	0	204	43	1.18784641916898	0.0278669582266173	1.18784641916898	479.149254620495	0	11.2408742808396						328	18	3	NaN	NaN	NaN	7.0495E-05	1	30499	85.813	80.719	1	113360			18408	2517	15530	15986	18408	18408	607	
SYFSSFTDDIISQPMLK	17	Unmodified	_SYFSSFTDDIISQPMLK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.976967	1977.93938	1.463	0.0014484	-0.085475	-8.4618E-05	1.3776	0.0013637	990.478432267267	18.479	0.097601	18.479	18.435	18.532	0	204	52	1.18784641916898	0.0338314842791501	1.18784641916898	479.083756156061	0	13.6449580545345						405	12	5	NaN	NaN	NaN	1.7404E-06	1	31247	94.507	80.729	1	92303			18409	389	15531	15987	18409	18409		
SYGPAPGAGHVQEESNLSLQALESR	25	Unmodified	_SYGPAPGAGHVQEESNLSLQALESR_			0	0	0	Q13155	Q13155	Q13155	AIMP2	Aminoacyl tRNA synthase complex-interacting multifunctional protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	866.424529	2596.25176	1.7029	0.0014754	-0.14354	-0.00012437	1.5593	0.001351	866.75904544918	11.252	0.18626	11.252	11.208	11.394	0	507	55	0.985374541851584	0.0363360970921059	0.985374541851584	595.142180363599	0	21.9461160511255						729	22	5	NaN	NaN	NaN	8.1715E-25	1	37232	125.77	119.66	1	224090			18410	1636	15532	15988	18410	18410		
SYHEEFNPPK	10	Unmodified	_SYHEEFNPPK_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.527894	1246.56185	-0.13303	-5.5411E-05	-1.3655	-0.00056876	-1.4985	-0.00062417	416.527151866638	4.4588	0.17732	4.4588	4.3524	4.5297	0	897	22	0.720567078607086	0.0143871873657558	0.720567078607086	437.703821952884	0	8.73940412225988						192	21	3	NaN	NaN	NaN	0.0042633	1	10806	43.734	39.532	1	35928			18411	1257	15534	15989	18411	18411		
SYHEEFNPPK	10	Unmodified	_SYHEEFNPPK_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.527894	1246.56185	-0.37825	-0.00015755	0.28904	0.00012039	-0.089212	-3.7159E-05	416.52787708427	4.4322	0.35467	4.4322	4.2194	4.5741	0	828	34	0.767766820543916	0.022539197240526	0.767766820543916	466.374992144497	0	13.6912896659778						550	41	3	NaN	NaN	NaN	0.038285	1	10807	37.722	36.22	1	121240			18412	1257	15534	15989	18412	18412		
SYHEEFNPPK	10	Unmodified	_SYHEEFNPPK_			0	0	0	P54819	P54819	P54819	AK2	Adenylate kinase 2, mitochondrial;Adenylate kinase 2, mitochondrial, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.288202	1246.56185	2.478	0.001547	-0.17716	-0.0001106	2.3009	0.0014364	624.287609819395	4.4499	0.3458	4.4499	4.2637	4.6095	0	591	46	0.928742107665821	0.0303997669355048	0.928742107665821	376.108921544884	0	12.3108702221592						576	40	3	NaN	NaN	NaN	5.949E-05	1	10808	92.732	82.644	1	202060			18413	1257	15534	15989	18413	18413		
SYHLSELVQQILK	13	Unmodified	_SYHLSELVQQILK_			0	0	0	P09884	P09884	P09884	POLA1	DNA polymerase alpha catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.959357	1556.85624	-2.1195	-0.0011021	-0.57232	-0.00029758	-2.6918	-0.0013996	519.95886940892	16.635	0.070945	16.635	16.608	16.679	0	768	25	0.808687310729125	0.0163477001153799	0.808687310729125	490.15941114446	0	9.90862470056089						112	9	3	NaN	NaN	NaN	0.00098005	1	20271	81.163	76.636	1	19488			18414	612	15535	15990	18414	18414		
SYIEGYVPSQADVAVFEAVSSPPPADLCHALR	32	Unmodified	_SYIEGYVPSQADVAVFEAVSSPPPADLCHALR_			0	0	0	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1149.22928	3444.66601	1.4114	0.001622	0.47022	0.0005404	1.8816	0.0021624	1149.89845960556	18.24	0.24826	18.24	18.107	18.355	0	327	124	1.10599442759226	0.0819421149297042	1.10599442759226	667.116714670353	0	49.4260668419912						2583	29	5	NaN	NaN	NaN	6.7717E-07	1	38631	54.747	51.979	1	506950			18415	829	15536	15991	18415	18415		
SYISFDILR	9	Unmodified	_SYISFDILR_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.300581	1112.58661	0.35908	0.00020011	0.46201	0.00025748	0.82109	0.00045759	557.300933813726	15.473	0.15086	15.473	15.393	15.544	0	633	64	0.900343422309015	0.0426423617596632	0.900343422309015	365.088959056278	0	17.2914635468879						508	18	4	NaN	NaN	NaN	0.018987	1	7059	58.426	48.347	1	154960			18416	1137	15537	15992	18416	18416		
SYIYSGSHDGHINYWDSETGENDSFAGK	28	Unmodified	_SYIYSGSHDGHINYWDSETGENDSFAGK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	784.835239	3135.31185	1.8468	0.0014494	0.69502	0.00054547	2.5418	0.0019949	785.086067173671	10.179	0.16848	10.179	10.135	10.303	0	447	34	1.02569221487577	0.022139515615524	1.02569221487577	825.232857742641	0	17.8126103283814						519	20	6	NaN	NaN	NaN	6.907E-10	1	38398	70.337	68.964	1	191280			18417	300	15538	15993	18417	18417		
SYLENPAFMLLDLK	14	Unmodified	_SYLENPAFMLLDLK_			0	0	0	P11182	P11182	P11182	DBT	Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.431467	1652.84838	2.254	0.001865	0.00049373	4.0853E-07	2.2545	0.0018654	827.431788643711	19.782	0.079797	19.782	19.738	19.818	0	345	34	1.09397730668811	0.0220420155259144	1.09397730668811	441.828548871098	0	8.90218807508177						171	10	3	NaN	NaN	NaN	1.4199E-05	1	23141	80.623	73.483	1	39379			18418	645	15539	15994	18418	18418		
SYLFNIMDTPGHVNFSDEVTAGLR	24	Unmodified	_SYLFNIMDTPGHVNFSDEVTAGLR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	895.098877	2682.2748	1.136	0.0010168	0.080744	7.2274E-05	1.2167	0.0010891	895.432451172269	17.841	0.088672	17.841	17.805	17.894	0	453	52	1.02166545906632	0.0342345274153426	1.02166545906632	616.955614103685	0	20.6732876184191						461	11	5	NaN	NaN	NaN	1.5838E-06	1	37555	48.201	41.814	1	97310			18419	1796	15540	15995	18419	18419		
SYLSGGAGAAGGGGADPGNK	20	Unmodified	_SYLSGGAGAAGGGGADPGNK_			0	0	0	P25490	P25490	P25490	YY1	Transcriptional repressor protein YY1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.387165	1662.75978	2.9979	0.0024954	-3.6503	-0.0030385	-0.65244	-0.00054308	832.384018278239	4.8489	0.053204	4.8489	4.8223	4.8755	0	411	28	1.04982941439551	0.0180891625147663	1.04982941439551	423.97738307961	0	7.30537331108064						93	7	3	NaN	NaN	NaN	0.0013248	1	23413	51.577	46.426	1	15690			18420	838	15541	15996	18420	18420		
SYLSGMPECK	10	Unmodified	_SYLSGMPECK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.259742	1170.50493	0.68122	0.00039937	2.1462	0.0012582	2.8274	0.0016576	586.260477306941	7.0481	0.11535	7.0481	7.0037	7.1191	0	612	28	0.914549654013882	0.0182575606051391	0.914549654013882	370.624947455586	0	7.39895030329774						180	14	3	NaN	NaN	NaN	0.0080273	1	8616	55.235	42.408	1	61821			18421	2499	15542	15997	18421	18421		
SYLTEQVNQDLPK	13	Unmodified	_SYLTEQVNQDLPK_			0	0	0	Q16822	Q16822	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.89102	1533.76749	2.1269	0.0016333	-1.4243	-0.0010937	0.7026	0.00053952	767.889697792781	10.755	0.20393	10.755	10.64	10.844	0	426	64	1.03977710643793	0.042237198940938	1.03977710643793	420.209444886818	0	17.0694948086984						422	24	2	NaN	NaN	NaN	0.00049681	1	19545	65.879	59.132	1	122250			18422	1908	15543	15998	18422	18422		
SYNDELQFLEK	11	Unmodified	_SYNDELQFLEK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.332807	1384.65106	1.0754	0.00074563	2.1308	0.0014773	3.2062	0.002223	693.334358906493	12.6	0.19507	12.6	12.529	12.724	0	477	46	1.0055473068722	0.0302445172563094	1.0055473068722	406.767226791213	0	12.2346092778622						452	23	3	NaN	NaN	NaN	4.4562E-05	1	14963	123.42	113.33	1	228470			18423	3395	15544	15999	18423	18423		
SYNQEHSQSFTFDDAQQEDR	20	Unmodified	_SYNQEHSQSFTFDDAQQEDR_			0	0	0	Q9NPQ8	Q9NPQ8	Q9NPQ8	RIC8A	Synembryn-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	811.338901	2430.99487	1.5398	0.0012493	-0.29386	-0.00023842	1.246	0.0010109	811.673023799446	6.8885	0.035479	6.8885	6.8707	6.9062	0	585	19	0.932794566565362	0.0121556930353043	0.932794566565362	563.589046494106	0	7.34439896285801						54	5	3	NaN	NaN	NaN	0.02564	1	36487	16.687	16.253	1	8876			18424	2994	15545	16000	18424	18424		
SYPDEEGPK	9	Unmodified	_SYPDEEGPK_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.227279	1020.44001	0.74911	0.00038297	-6.3036	-0.0032226	-5.5545	-0.0028396	511.725600574459	2.8892	0.266	2.8892	2.8272	3.0932	0	717	49	0.84338031290707	0.0326046192681035	0.84338031290707	342.368079693827	0	13.2357617520045						485	31	3	NaN	NaN	NaN	0.062368	1	4737	20.234	1.8972	1	107900			18425	2289	15546	16001	18425	18425		
SYPGSQLDILIDQGK	15	Unmodified	_SYPGSQLDILIDQGK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.425227	1632.8359	2.0761	0.0016971	-1.2182	-0.00099577	0.85796	0.00070132	817.424955010048	14.356	0.26599	14.356	14.232	14.498	0	366	88	1.07994477139643	0.0581428556453119	1.07994477139643	436.205618490927	0	23.4847567943656						994	31	5	NaN	NaN	NaN	8.2592E-05	1	22576	89.382	84.554	1	487450			18426	634	15547	16002	18426	18426		
SYQDPSNAQFLESIR	15	Unmodified	_SYQDPSNAQFLESIR_			0	0	0	Q9UNZ2	Q9UNZ2	Q9UNZ2	NSFL1C	NSFL1 cofactor p47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.92084	1753.82713	2.4673	0.0021661	-0.038174	-3.3514E-05	2.4291	0.0021326	877.921004683828	12.201	0.18624	12.201	12.112	12.298	0	330	46	1.10399226369747	0.0300407400465015	1.10399226369747	445.65985233293	0	12.1268528895819						563	22	4	NaN	NaN	NaN	1.1644E-06	1	26003	126.32	120.93	1	176700			18427	3309	15548	16003	18427	18427		
SYQFWDTQPVPK	12	Unmodified	_SYQFWDTQPVPK_			0	0	0	P30419	P30419	P30419	NMT1	Glycylpeptide N-tetradecanoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.364441	1494.71433	0.68407	0.00051193	1.5166	0.001135	2.2007	0.0016469	748.365550656459	11.837	0.22171	11.837	11.775	11.997	0	447	43	1.02569221487577	0.0281911902363581	1.02569221487577	414.614111674888	0	11.3956849115024						470	26	4	NaN	NaN	NaN	1.1553E-06	1	18375	112.93	99.652	1	112040			18428	909	15549	16004	18428	18428		
SYSMIVNNLLK	11	Unmodified	_SYSMIVNNLLK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.347206	1280.67986	1.4978	0.00096063	-1.0434	-0.00066918	0.45444	0.00029145	641.347014074102	14.471	0.1862	14.471	14.418	14.604	0	504	58	0.987393073566096	0.0383627278189489	0.987393073566096	399.743856455918	0	15.5310637405325						686	22	5	NaN	NaN	NaN	4.3332E-08	1	11783	162.59	146.13	1	479690			18429	2950	15550	16005	18429	18429		
SYSMIVNNLLK	11	Oxidation (M)	_SYSM(Oxidation (M))IVNNLLK_	SYSM(1)IVNNLLK	SYSM(89)IVNNLLK	0	1	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.344663	1296.67477	1.3246	0.00086011	0.54506	0.00035393	1.8696	0.001214	649.345361113862	13.487	0.28379	13.487	13.345	13.629	0	513	49	0.981336640919867	0.0323032171840146	0.981336640919867	397.239623495143	0	13.0761629565075						683	33	4	NaN	NaN	NaN	5.422E-05	1	12257	88.921	79.944	1	210790			18430	2950	15550	16006	18430	18430	630	
SYSPSDLVELVAR	13	Unmodified	_SYSPSDLVELVAR_			0	0	0	Q9H9T3	Q9H9T3	Q9H9T3	ELP3	Elongator complex protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.375006	1434.73546	0.57523	0.00041323	-0.080501	-5.783E-05	0.49473	0.0003554	718.375047686897	16.333	0.20393	16.333	16.218	16.422	0	459	37	1.01763759082241	0.0241705518393689	1.01763759082241	411.515930845786	0	9.77417425313058						373	24	2	NaN	NaN	NaN	0.00034752	1	16537	47.361	30.709	1	115710			18431	2939	15551	16007	18431	18431		
SYSPYDMLESIR	12	Unmodified	_SYSPYDMLESIR_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.839942	1459.66533	1.255	0.00091723	1.4665	0.0010718	2.7215	0.001989	730.841209710716	15.642	0.41677	15.642	15.491	15.908	0	453	73	1.02166545906632	0.0483344518917967	1.02166545906632	413.077341974564	0	19.5424703224353						1939	48	6	NaN	NaN	NaN	4.3944E-05	1	17245	108.93	97.573	1	2699400			18432	558	15552	16008	18432	18432		
SYSPYDMLESIRK	13	Unmodified	_SYSPYDMLESIRK_			0	0	1	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.887423	1587.76029	1.4377	0.0011428	4.964	0.0039458	6.4017	0.0050887	795.393204571728	13.327	0.13305	13.327	13.274	13.407	0	375	31	1.07392668217569	0.0200589169906749	1.07392668217569	433.878385582811	0	8.10402671327779						208	16	3	NaN	NaN	NaN	0.020499	1	21200	55.754	50.925	1	44275			18433	558	15553	16009	18433	18433		
SYSSGGEDGYVR	12	Unmodified	_SYSSGGEDGYVR_			0	0	0	Q13347	Q13347	Q13347	EIF3I	Eukaryotic translation initiation factor 3 subunit I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.775656	1275.53676	3.0703	0.0019613	-0.42029	-0.00026847	2.65	0.0016928	638.774920376065	3.9268	0.32808	3.9268	3.8824	4.2105	4.4409E-16	579	49	0.936845902828289	0.0324106998985512	0.936845902828289	379.296262492175	0	13.1219630668857						717	38	4	NaN	NaN	NaN	5.0432E-05	1	11635	117.3	90.843	1	285000			18434	1655	15554	16010	18434	18434		
SYSYVCGISSK	11	Unmodified	_SYSYVCGISSK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.789721	1249.56489	1.673	0.001047	2.2478	0.0014067	3.9209	0.0024536	625.791434522936	6.7466	0.31027	6.7466	6.658	6.9683	0	570	34	0.942920803299286	0.0222684693182358	0.942920803299286	381.840747448714	0	9.01773398069264						368	36	3	NaN	NaN	NaN	0.062431	1	10901	28.647	19.253	1	117570			18435	1155	15555	16011	18435	18435		
SYTLNAVSFHFLGEQK	16	Unmodified	_SYTLNAVSFHFLGEQK_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.965051	1839.91555	1.5708	0.0014467	1.1219	0.0010333	2.6928	0.0024799	921.467710934927	14.125	0.097542	14.125	14.09	14.187	0	174	34	1.20774045859593	0.021866930737948	1.20774045859593	487.361990533826	0	8.82400752203102						220	12	4	NaN	NaN	NaN	3.372E-06	1	28227	106.47	100.77	1	46999			18436	878	15556	16012	18436	18436		
SYVDMYLK	8	Unmodified	_SYVDMYLK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.749336	1017.48412	0.21474	0.00010946	2.067	0.0010536	2.2817	0.0011631	509.750555904257	10.303	0.15961	10.303	10.25	10.41	0	660	34	0.882057989648486	0.0223550653870297	0.882057989648486	358.082986031803	0	9.07533139619756						304	19	4	NaN	NaN	NaN	0.044329	1	4674	27.736	21.506	1	108530			18437	652	15557	16013	18437	18437		
SYVDPSTDER	10	Unmodified	_SYVDPSTDER_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.759475	1167.5044	2.6318	0.001539	0.35445	0.00020727	2.9862	0.0017462	584.759481611322	3.9622	0.25717	3.9622	3.8647	4.1219	0	603	46	0.920633820089869	0.0304208382695857	0.920633820089869	373.10175579494	0	12.3285370615956						451	30	3	NaN	NaN	NaN	0.0010127	1	8527	57.032	39.637	1	152940			18438	1816	15558	16014	18438	18438		
SYYFPVK	7	Unmodified	_SYYFPVK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.234179	902.453805	-0.12463	-5.6361E-05	-0.75505	-0.00034146	-0.87968	-0.00039782	452.23374967846	8.7599	0.097666	8.7599	8.7245	8.8221	0	702	43	0.853568545818287	0.0285211140004684	0.853568545818287	347.106115336895	0	11.5981934131519						261	12	2	NaN	NaN	NaN	0.072202	1	2366	42.229	25.681	1	67439			18439	1841	15559	16015	18439	18439		
TAAAVAAQSGILDR	14	Unmodified	_TAAAVAAQSGILDR_			0	0	0	Q9Y6N5	Q9Y6N5	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.367515	1342.72048	1.6213	0.0010901	-3.0174	-0.0020288	-1.3961	-0.00093871	672.363071839534	7.8906	0.16844	7.8906	7.8197	7.9881	0	513	43	0.981336640919867	0.0282653130088721	0.981336640919867	397.096007829804	0	11.4375052228377						520	20	4	NaN	NaN	NaN	0.022607	1	13696	48.701	40.699	1	162160			18440	3473	15560	16016	18440	18440		
TAADELEAFLGGGAPGGR	18	Unmodified	_TAADELEAFLGGGAPGGR_			0	0	0	Q3YEC7	Q3YEC7	Q3YEC7	RABL6	Rab-like protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.915558	1687.81656	0.55439	0.00046841	2.2292	0.0018835	2.7836	0.0023519	844.917203984039	17.087	0.11526	17.087	17.016	17.131	0	369	28	1.07793901817685	0.0180542692060639	1.07793901817685	435.276111935107	0	7.29038653516471						237	14	3	NaN	NaN	NaN	1.3062E-07	1	24138	106.11	103.63	1	51146			18441	1935	15561	16017	18441	18441		
TAAELLQSQGSQAGGSQTLK	20	Unmodified	_TAAELLQSQGSQAGGSQTLK_			0	0	0	Q14141	Q14141	Q14141	SEPT6	Septin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.008175	1974.0018	2.7524	0.0027194	-0.8122	-0.00080246	1.9402	0.0019169	988.509069948803	7.8463	0.15065	7.8463	7.802	7.9527	0	246	49	1.1599488233373	0.0319136539204889	1.1599488233373	467.838566925326	0	12.8716352093499						438	18	4	NaN	NaN	NaN	1.893E-37	1	31184	217.77	180.27	1	132900			18442	1725	15562	16018	18442	18442		
TAAFLLPILSQIYSDGPGEALR	22	Unmodified	_TAAFLLPILSQIYSDGPGEALR_			0	0	0	O00571	O00571	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1166.631	2331.24745	0.3797	0.00044297	0.11253	0.00013129	0.49224	0.00057426	1167.13257446457	20.137	0.044338	20.137	20.119	20.164	0	66	46	1.27913350869533	0.0296839714567931	1.27913350869533	515.356570178804	0	11.9595254250368						186	6	5	NaN	NaN	NaN	6.1596E-08	1	35908	69.369	61.721	1	49710			18443	93	15564	16019	18443	18443		
TAAFLLPVIMR	11	Unmodified	_TAAFLLPVIMR_			0	0	0	Q5T1V6	Q5T1V6	Q5T1V6	DDX59	Probable ATP-dependent RNA helicase DDX59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.365201	1230.71585	0.29893	0.00018425	-1.2955	-0.00079853	-0.99661	-0.00061428	616.364423521817	17.761	0.097526	17.761	17.716	17.814	0	594	40	0.926715457081489	0.0263428128199913	0.926715457081489	375.341127910257	0	10.6694465929415						173	12	3	NaN	NaN	NaN	0.028553	1	10344	40.502	36.609	1	31022			18444	1989	15565	16020	18444	18444		
TAAGLMHTFNAHAATDITGFGILGHAQNLAK	31	Unmodified	_TAAGLMHTFNAHAATDITGFGILGHAQNLAK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	788.154186	3148.58764	1.0608	0.00083611	5.086	0.0040086	6.1469	0.0048447	788.410957290458	14.755	0.097557	14.755	14.71	14.808	1.7764E-15	366	25	1.07994477139643	0.0160449211219345	1.07994477139643	868.866199327827	0	12.908891272008						190	12	3	NaN	NaN	NaN	1.9478E-07	1	38414	61.529	61.014	1	92542			18445	1154	15566	16021	18445	18445		
TAAGSSWEDPSLLEWDADDFR	21	Unmodified	_TAAGSSWEDPSLLEWDADDFR_			0	0	0	Q9BTD8	Q9BTD8	Q9BTD8	RBM42	RNA-binding protein 42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1184.52184	2367.02913	0.37913	0.00044908	0.4128	0.00048897	0.79192	0.00093805	1185.02358576998	17.929	0.062077	17.929	17.903	17.965	0	96	58	1.2593374219024	0.0376306100611712	1.2593374219024	507.335363636765	0	15.1598284202637						255	8	3	NaN	NaN	NaN	1.648E-05	1	36194	58.794	56.692	1	46620			18446	2733	15567	16022	18446	18446		
TAAPTVCLLVLSQAEK	16	Unmodified	_TAAPTVCLLVLSQAEK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.966205	1699.91786	1.2907	0.0010984	-0.57811	-0.00049196	0.71262	0.00060641	850.965933278545	15.012	0.097544	15.012	14.967	15.065	0	297	40	1.12600091227925	0.0259959052130696	1.12600091227925	454.657347416614	0	10.4966427460022						239	12	3	NaN	NaN	NaN	0.014372	1	24501	37.146	25.664	1	50088			18447	3067	15568	16023	18447	18447		
TAAQCLEHYEFLLDK	15	Unmodified	_TAAQCLEHYEFLLDK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.297821	1836.87163	-0.68956	-0.00042291	-0.89153	-0.00054677	-1.5811	-0.00096968	613.631405850966	13.434	0.11528	13.434	13.389	13.504	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	511.734464644528	0	12.3365100540586						392	14	5	NaN	NaN	NaN	4.1826E-05	1	28150	55.782	53.798	1	157480			18448	2640	15569	16024	18448	18448		
TAASFDECSTAGVFLSTLHCQDYR	24	Unmodified	_TAASFDECSTAGVFLSTLHCQDYR_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	912.739131	2735.19556	1.3874	0.0012664	7.9843	0.0072876	9.3718	0.008554	913.416139268399	15.021	0.10641	15.021	14.967	15.074	0	291	58	1.12999890578964	0.0379783412948009	1.12999890578964	682.307086535456	0	22.931784506638						329	13	4	NaN	NaN	NaN	0.040041	1	37711	31.381	30.867	1	56497			18449	1786	15570	16025	18449	18449		
TAASGIPYHSEVPVSLK	17	Unmodified	_TAASGIPYHSEVPVSLK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.467426	1754.9203	1.9064	0.0016747	0.14231	0.00012501	2.0487	0.0017997	878.467363627193	9.4519	0.11529	9.4519	9.4076	9.5228	0	228	49	1.17191150690002	0.0318961142140304	1.17191150690002	473.075196240277	0	12.8757678393476						342	14	4	NaN	NaN	NaN	3.4515E-07	1	26032	81.908	78.62	1	104540			18450	1511	15571	16026	18450	18450		
TAASGIPYHSEVPVSLK	17	Unmodified	_TAASGIPYHSEVPVSLK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.98071	1754.9203	0.417	0.00024435	2.0696	0.0012128	2.4866	0.0014571	586.316342947283	9.443	0.088678	9.443	9.4076	9.4962	0	600	64	0.922661313351899	0.042577380990271	0.922661313351899	558.684947790126	0	25.7812282051511						333	11	4	NaN	NaN	NaN	0.002498	1	26033	54.556	43.585	1	87589			18451	1511	15571	16026	18451	18451		
TAATLATHELR	11	Unmodified	_TAATLATHELR_			0	0	0	Q8N1G4	Q8N1G4	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.325119	1182.63569	2.3886	0.0014148	-1.7416	-0.0010316	0.64703	0.00038325	592.323580115695	4.4411	0.097532	4.4411	4.4056	4.5031	0	531	28	0.969216233931596	0.0181894169559895	0.969216233931596	392.731889726404	0	7.37045443942856						143	12	3	NaN	NaN	NaN	2.5896E-05	1	8954	97.277	86.575	1	31864			18452	2241	15572	16027	18452	18452		
TAATSVPAYEPLDSLDR	17	Unmodified	_TAATSVPAYEPLDSLDR_			0	0	0	Q96T37	Q96T37	Q96T37	RBM15	Putative RNA-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.449431	1804.88431	1.6257	0.0014687	0.91923	0.00083047	2.5449	0.0022992	903.450973169956	12.343	0.15074	12.343	12.272	12.423	0	303	31	1.12200181823275	0.0199982246978856	1.12200181823275	452.829447288033	0	8.07109657892448						285	18	3	NaN	NaN	NaN	0.059351	1	27351	32.759	12.148	1	66245			18453	2628	15573	16028	18453	18453		
TAAVGEICEEGLHVLEGLAASGLR	24	Unmodified	_TAAVGEICEEGLHVLEGLAASGLR_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.088201	2451.24277	0.86743	0.00070964	1.1787	0.00096431	2.0462	0.0016739	818.423470884981	19.96	0.026617	19.96	19.951	19.978	0	360	34	1.08395544855938	0.0220602476695482	1.08395544855938	654.88882623252	0	13.3280474967027						107	4	5	NaN	NaN	NaN	0.00075592	1	36583	17.378	17.314	1	22691			18454	3104	15574	16029	18454	18454		
TAAYAIPMLQLLLHR	15	Unmodified	_TAAYAIPMLQLLLHR_			0	0	0	Q9NY93	Q9NY93	Q9NY93	DDX56	Probable ATP-dependent RNA helicase DDX56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.989817	1709.96508	0.78205	0.00066943	1.0785	0.0009232	1.8606	0.0015926	856.492418289294	19.33	0.088666	19.33	19.286	19.375	0	210	31	1.18386433251387	0.0199159054005791	1.18386433251387	477.99875399231	0	8.0412744135055						154	11	3	NaN	NaN	NaN	0.00013584	1	24764	70.389	59.602	1	31948			18455	3111	15575	16030	18455	18455		
TAAYVNAIEK	10	Unmodified	_TAAYVNAIEK_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.290214	1078.56587	0.87514	0.00047283	-0.23931	-0.0001293	0.63583	0.00034353	540.290171307509	5.8953	0.22175	5.8953	5.8598	6.0815	0	651	40	0.888155670855968	0.0264196242559493	0.888155670855968	360.285802192688	0	10.7172828266811						352	26	3	NaN	NaN	NaN	0.045366	1	6178	39.039	20.636	1	132920			18456	472	15576	16031	18456	18456		
TACFLLPMFER	11	Unmodified	_TACFLLPMFER_			0	0	0	Q8TDD1	Q8TDD1	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.841233	1383.66791	0.44532	0.00030853	-1.0911	-0.00075593	-0.64574	-0.00044739	692.840349300654	17.681	0.15072	17.681	17.619	17.77	0	546	58	0.959108205975751	0.0384052068408169	0.959108205975751	387.984270370467	0	15.5359072748231						472	18	4	NaN	NaN	NaN	0.00073612	1	14942	67.881	58.366	1	103700			18457	2347	15577	16032	18457	18457		
TADGIVSHLK	10	Unmodified	_TADGIVSHLK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	347.529346	1039.56621	-0.51622	-0.0001794	-1.1499	-0.00039962	-1.6661	-0.00057903	347.529038058728	5.1061	0.18619	5.1061	5.0617	5.2479	0	882	28	0.730840773481911	0.0184849145635965	0.730840773481911	444.909778036172	0	11.2529562305693						298	22	3	NaN	NaN	NaN	0.064551	1	5221	14.763	9.4542	1	96739			18458	904	15578	16033	18458	18458		
TADGIVSHLK	10	Unmodified	_TADGIVSHLK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.790381	1039.56621	2.5659	0.0013363	0.7349	0.00038273	3.3008	0.001719	520.790891186434	5.0972	0.42562	5.0972	5.0529	5.4785	0	615	97	0.912521036363781	0.0650014183163196	0.912521036363781	370.34483484331	0	26.3806954268849						1309	49	5	NaN	NaN	NaN	0.0042445	1	5224	65.404	51.756	1	1026600			18459	904	15578	16033	18459	18459		
TAEDDETPVDLNK	13	Unmodified	_TAEDDETPVDLNK_			0	0	0	O00443	O00443	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.833368	1445.65218	1.5869	0.0011487	-0.75146	-0.00054393	0.83548	0.00060475	724.334101589492	5.913	0.13307	5.913	5.8687	6.0017	0	486	31	0.999498404980629	0.0201699767195437	0.999498404980629	404.151598236476	0	8.15581924590873						158	16	2	NaN	NaN	NaN	0.043048	1	16844	47.361	45.562	1	43503			18460	80	15579	16034	18460	18460		
TAEDSTAAMSSDSAAGSSAK	20	Unmodified	_TAEDSTAAMSSDSAAGSSAK_			0	0	0	A0AV96	A0AV96	A0AV96	RBM47	RNA-binding protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.894359	1843.77417	3.3292	0.0030725	-1.9692	-0.0018174	1.36	0.0012552	922.892543003742	3.5987	0.044325	3.5987	3.5721	3.6164	0	327	22	1.10599442759226	0.0140151480609543	1.10599442759226	446.297227140357	0	5.65547308514238						75	6	3	NaN	NaN	NaN	2.5664E-07	1	28315	84.58	83.841	1	12214			18461	2	15580	16035	18461	18461		
TAEEENPEHVEIQK	14	Unmodified	_TAEEENPEHVEIQK_			0	0	0	O00566	O00566	O00566	MPHOSPH10	U3 small nucleolar ribonucleoprotein protein MPP10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.891748	1651.76894	3.1966	0.0026432	-2.4973	-0.002065	0.69933	0.00057827	826.889175437862	4.2992	0.1064	4.2992	4.2549	4.3613	0	390	25	1.06389100039157	0.0160648436588446	1.06389100039157	429.679827321743	0	6.48820156082019						184	13	3	NaN	NaN	NaN	1.2639E-05	1	23098	93.162	86.786	1	35781			18462	91	15581	16036	18462	18462		
TAEELMNFSK	10	Unmodified	_TAEELMNFSK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.278989	1168.54342	0.54747	0.00032042	1.2904	0.00075525	1.8379	0.0010757	585.279732630566	9.2479	0.28378	9.2479	9.1858	9.4696	0	636	70	0.898312834727904	0.0466711740875143	0.898312834727904	364.052031573933	0	18.9140520825874						844	33	4	NaN	NaN	NaN	2.4208E-07	1	8562	150.53	114.32	1	314660			18463	1174	15582	16037	18463	18463		
TAEEQGELAFQDAK	14	Unmodified	_TAEEQGELAFQDAK_			0	0	0	Q6KB66;CON__Q6KB66-1	Q6KB66	Q6KB66	KRT80	Keratin, type II cytoskeletal 80	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.86246	1535.71037	2.2683	0.001744	-1.1847	-0.00091088	1.0836	0.0008331	768.86166713194	7.3231	0.15073	7.3231	7.2875	7.4383	0	438	31	1.03173026378327	0.0201254424104516	1.03173026378327	416.952721366015	0	8.13328665087562						213	18	3	NaN	NaN	NaN	0.00010347	1	19596	85.081	78.225	1	48411		+	18464	44	15583	16038	18464	18464		
TAEFQVAR	8	Unmodified	_TAEFQVAR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	461.243067	920.47158	-0.77317	-0.00035662	-3.4185	-0.0015768	-4.1917	-0.0019334	461.243093563553	4.8312	0.2394	4.8312	4.7159	4.9553	0	777	31	0.802556497112065	0.020440313348464	0.802556497112065	326.266167580842	0	8.30967380409061						299	28	3	NaN	NaN	NaN	0.040654	1	2713	36.57	23.742	1	89925			18465	3036	15584	16039	18465	18465		
TAEHEAAQQDLQSK	14	Unmodified	_TAEHEAAQQDLQSK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.249748	1554.72741	-0.067947	-3.5281E-05	0.26264	0.00013637	0.19469	0.00010109	519.249789347237	2.233	0.070963	2.233	2.2153	2.2862	0	837	13	0.761618911097395	0.00819892609025075	0.761618911097395	461.635998816025	0	4.96957123798052						40	9	2	NaN	NaN	NaN	0.054525	1	20191	34.193	31.522	1	7784.9			18466	2167	15585	16040	18466	18466		
TAEHFQEAMEESK	13	Unmodified	_TAEHFQEAMEESK_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.892684	1535.65622	-0.47149	-0.00024183	2.2215	0.0011394	1.75	0.00089757	512.893602083407	4.5297	0.10639	4.5297	4.5031	4.6095	0	783	43	0.798467866007927	0.0286244075786561	0.798467866007927	484.024031750821	0	17.351858168031						224	13	3	NaN	NaN	NaN	2.4408E-05	1	19588	134.2	126.64	1	50467			18467	2709	15586	16041	18467	18467		
TAEHFQEAMEESK	13	Unmodified	_TAEHFQEAMEESK_			0	0	0	Q9BRK5	Q9BRK5	Q9BRK5	SDF4	45 kDa calcium-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.835388	1535.65622	2.989	0.002298	0.73417	0.00056446	3.7232	0.0028625	768.836728849159	4.5386	0.15073	4.5386	4.4943	4.645	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	414.512690632304	0	11.3913240251651						433	18	4	NaN	NaN	NaN	0.00010229	1	19589	106.11	84.751	1	118720			18468	2709	15586	16041	18468	18468		
TAENATSGETLEENEAGD	18	Unmodified	_TAENATSGETLEENEAGD_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.382139	1836.74972	3.0118	0.002769	-1.6699	-0.0015353	1.3418	0.0012336	919.380802054782	5.9041	0.28381	5.9041	5.8066	6.0904	0	315	70	1.11400032671325	0.0460561408828231	1.11400032671325	449.540649121181	0	18.585369296584						1058	33	5	NaN	NaN	NaN	5.1039E-05	1	28144	106.47	102.96	1	564400			18469	3319	15587	16042	18469	18469		
TAEPAESSVPPVTSIGIDNLGLK	23	Unmodified	_TAEPAESSVPPVTSIGIDNLGLK_			0	0	0	Q8IXU6	Q8IXU6	Q8IXU6	SLC35F2	Solute carrier family 35 member F2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1148.10755	2294.20056	-0.22413	-0.00025733	-0.30397	-0.00034899	-0.5281	-0.00060632	1148.60818596548	15.686	0.079786	15.686	15.65	15.73	0	78	43	1.27121832677567	0.0277183202097289	1.27121832677567	512.216597721923	0	11.1686430043889						251	10	3	NaN	NaN	NaN	0.013736	1	35597	32.6	32.294	1	47002			18470	2215	15588	16043	18470	18470		
TAESQTPTPSATSFFSGK	18	Unmodified	_TAESQTPTPSATSFFSGK_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.439063	1842.86357	2.734	0.002522	-0.64675	-0.00059659	2.0873	0.0019254	922.438450231202	10.791	0.14189	10.791	10.738	10.879	0	309	46	1.11800162319566	0.0300035355206882	1.11800162319566	451.144099743174	0	12.107243621796						559	17	4	NaN	NaN	NaN	3.5847E-10	1	28301	110.14	102.17	1	142400			18471	1273	15589	16044	18471	18471		
TAFDDAIAELDTLNEDSYK	19	Unmodified	_TAFDDAIAELDTLNEDSYK_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.995301	2129.96407	0.62256	0.00044263	-1.2888	-0.00091636	-0.66629	-0.00047373	711.328579396604	18.736	0.088672	18.736	18.701	18.789	0	522	34	0.975277694896658	0.0222222853930807	0.975277694896658	589.730038298082	0	13.4373515199904						332	11	5	NaN	NaN	NaN	3.6484E-05	1	33733	78.157	78.157	1	129940			18472	1361	15590	16045	18472	18472		
TAFDDAIAELDTLNEDSYK	19	Unmodified	_TAFDDAIAELDTLNEDSYK_			0	0	0	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.98931	2129.96407	1.2678	0.0013514	3.3593	0.003581	4.6271	0.0049324	1066.49448481914	18.736	0.20392	18.736	18.692	18.896	0	180	76	1.203763835057	0.0497112416880776	1.203763835057	485.262025900779	0	20.0396266685131						1227	24	6	NaN	NaN	NaN	5.067E-35	1	33735	202.58	197.76	1	831460			18473	1361	15590	16045	18473	18473		
TAFDEAIAELDTLNEDSYK	19	Unmodified	_TAFDEAIAELDTLNEDSYK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.667185	2143.97972	0.9431	0.00067495	-0.45552	-0.000326	0.48758	0.00034894	716.001493718493	18.967	0.133	18.967	18.922	19.055	0	528	43	0.971237000454584	0.028292695105214	0.971237000454584	587.261861921186	0	17.107277418879						547	16	6	NaN	NaN	NaN	8.0237E-11	1	33929	168.43	144.99	1	321700			18474	863	15591	16046	18474	18474		
TAFDEAIAELDTLNEDSYK	19	Unmodified	_TAFDEAIAELDTLNEDSYK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.99714	2143.97972	1.8031	0.0019347	-0.053956	-5.7895E-05	1.7491	0.0018768	1073.49866746345	18.967	0.21278	18.967	18.914	19.126	0	156	127	1.21966378336455	0.0834978077282542	1.21966378336455	491.650810381935	0	33.6582633629296						1697	25	7	NaN	NaN	NaN	6.9902E-07	1	33931	86.729	76.403	1	1580100			18475	863	15591	16046	18475	18475		
TAFDEAIAELDTLNEESYK	19	Unmodified	_TAFDEAIAELDTLNEESYK_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.339068	2157.99537	0.69295	0.00049916	-0.12396	-8.9292E-05	0.56899	0.00040987	720.673353735396	19.011	0.11526	19.011	18.967	19.082	0	519	43	0.97729762293174	0.028284867590345	0.97729762293174	590.901755839557	0	17.1018301187372						523	14	6	NaN	NaN	NaN	3.0448E-08	1	34139	183	176.79	1	284790			18476	932	15592	16047	18476	18476		
TAFDEAIAELDTLNEESYK	19	Unmodified	_TAFDEAIAELDTLNEESYK_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.00496	2157.99537	1.482	0.0016006	0.57852	0.0006248	2.0605	0.0022254	1080.50695225497	19.011	0.28373	19.011	18.958	19.242	0	162	133	1.21569043230068	0.087377957977923	1.21569043230068	490.028649324322	0	35.2208930752272						1873	33	6	NaN	NaN	NaN	2.1951E-45	1	34141	202.58	190.2	1	1864600			18477	932	15592	16047	18477	18477		
TAFDEAIAELDTLSEESYK	19	Unmodified	_TAFDEAIAELDTLSEESYK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.335435	2130.98448	0.60182	0.00042809	-0.41493	-0.00029516	0.18688	0.00013294	711.669296308824	19.907	0.053178	19.907	19.898	19.951	0	516	37	0.979317271586824	0.0242408171075922	0.979317271586824	592.170847245176	0	14.6578699477634						160	7	5	NaN	NaN	NaN	3.0741E-07	1	33749	106.97	101.36	1	80403			18478	1427	15593	16048	18478	18478		
TAFDEAIAELDTLSEESYK	19	Unmodified	_TAFDEAIAELDTLSEESYK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1066.49951	2130.98448	1.5169	0.0016178	0.51432	0.00054852	2.0312	0.0021663	1067.00173038289	19.907	0.14189	19.907	19.889	20.031	0	171	145	1.20972836110953	0.0953999412971795	1.20972836110953	487.664945529675	0	38.4575650797781						1346	17	6	NaN	NaN	NaN	3.8012E-72	1	33752	275.23	256.03	1	1522600			18479	1427	15593	16048	18479	18479		
TAFHQEQGHQLLK	13	Unmodified	_TAFHQEQGHQLLK_			0	0	0	P51580	P51580	P51580	TPMT	Thiopurine S-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.935435	1535.78447	0.5247	0.00026914	1.8349	0.00094116	2.3596	0.0012103	512.936515361538	3.7317	0.07091	3.7317	3.7051	3.776	0	747	25	0.822982596624503	0.0163295196874556	0.822982596624503	498.884270733287	0	9.89880047781628						116	9	3	NaN	NaN	NaN	0.001315	1	19606	54.27	45.796	1	29588			18480	1192	15594	16049	18480	18480		
TAFQEALDAAGDK	13	Unmodified	_TAFQEALDAAGDK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.822606	1335.63066	1.7566	0.0011748	1.896	0.0012681	3.6526	0.0024429	668.823999949936	10.197	0.3458	10.197	10.108	10.454	0	543	70	0.961130371139249	0.0464969566450577	0.961130371139249	388.940591919652	0	18.8159217344834						2136	40	6	NaN	NaN	NaN	4.0711E-08	1	13456	141.44	130.74	1	5445400			18481	628	15595	16050	18481	18481		
TAGAPDPAWDWQHVGPGYR	19	Unmodified	_TAGAPDPAWDWQHVGPGYR_			0	0	0	O60936	O60936	O60936	NOL3	Nucleolar protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.32565	2079.95512	-0.56868	-0.00039485	0.023341	1.6206E-05	-0.54534	-0.00037864	694.659956603582	11.82	0.070943	11.82	11.784	11.855	0	663	46	0.880024865079826	0.0305095775467987	0.880024865079826	532.215438464207	0	18.4513743142409						222	9	3	NaN	NaN	NaN	0.00028825	1	33021	62.398	61.721	1	44343			18482	296	15596	16051	18482	18482		
TAGNSEFLGK	10	Unmodified	_TAGNSEFLGK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.258914	1022.50327	0.28981	0.00014846	0.64603	0.00033094	0.93584	0.00047939	512.259260170584	4.6982	0.19508	4.6982	4.645	4.8401	0	723	28	0.839303037468863	0.0183490160938558	0.839303037468863	340.703739384588	0	7.44853541345196						289	23	3	NaN	NaN	NaN	0.0079527	1	4792	60.892	47.244	1	63829			18483	1457	15597	16052	18483	18483		
TAGPLESSETEEASQLK	17	Unmodified	_TAGPLESSETEEASQLK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.928528	1775.8425	3.4462	0.0030634	-1.1976	-0.0010646	2.2485	0.0019988	888.925769250111	7.8463	0.36372	7.8463	7.7487	8.1124	0	342	79	1.09598084995137	0.0520455510466027	1.09598084995137	442.382787285955	0	21.007717369196						1003	42	5	NaN	NaN	NaN	0.00095485	1	26561	65.173	48.885	1	273200			18484	3158	15598	16053	18484	18484		
TAGTICLETFK	11	Unmodified	_TAGTICLETFK_			0	0	0	P15170;Q8IYD1	P15170;Q8IYD1	P15170	GSPT1;GSPT2	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A;Eukaryotic peptide chain release factor GTP-binding subunit ERF3B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.815738	1239.61692	1.2881	0.00079965	-1.8631	-0.0011567	-0.57508	-0.00035702	621.314930903375	10.294	0.3015	10.294	10.188	10.489	0	555	142	0.953040030838688	0.0952924358785301	0.953040030838688	385.972445180834	0	38.5925599063315						970	35	2	NaN	NaN	NaN	0.0078704	1	10609	62.271	44.801	1	463120			18485	709;2224	15599	16054	18485	18485		
TAGYYPNPPLVLSSDETLISK	21	Unmodified	_TAGYYPNPPLVLSSDETLISK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.08609	2264.15763	0.1216	0.00013778	-2.6495	-0.0030021	-2.5279	-0.0028643	1133.58471845462	15.677	0.17732	15.677	15.588	15.766	0	60	40	1.28308947459206	0.0257225849725	1.28308947459206	517.041192454902	0	10.3653223493494						288	21	3	NaN	NaN	NaN	0.00029779	1	35316	49.967	48.119	1	58616			18486	2001	15600	16055	18486	18486		
TAHLDEEVNK	10	Unmodified	_TAHLDEEVNK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.28566	1154.55677	1.2242	0.00070795	0.32055	0.00018537	1.5448	0.00089332	578.285665731553	2.6143	0.27492	2.6143	2.4813	2.7562	0	654	58	0.886123392477847	0.0386401075458892	0.886123392477847	359.16286550327	0	15.6615792646316						375	32	4	NaN	NaN	NaN	0.0024953	1	8182	67.881	45.494	1	73226			18487	656	15601	16056	18487	18487		
TAICNLILGNPPSK	14	Unmodified	_TAICNLILGNPPSK_			0	0	0	Q9NRX1	Q9NRX1	Q9NRX1	PNO1	RNA-binding protein PNO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.408326	1496.8021	2.0234	0.0015163	-2.1967	-0.0016462	-0.17332	-0.00012988	749.407042981444	12.813	0.19512	12.813	12.706	12.901	0	417	46	1.04580932352505	0.0301486093573291	1.04580932352505	422.740626945824	0	12.1867741418703						563	23	4	NaN	NaN	NaN	0.00031588	1	18453	65.173	24.786	1	158660			18488	3028	15602	16057	18488	18488		
TAIEEVQAER	10	Unmodified	_TAIEEVQAER_			0	0	0	Q32P28	Q32P28	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.293485	1144.57242	1.491	0.00085481	-9.873	-0.0056601	-8.382	-0.0048053	573.288865573749	4.8667	0.25712	4.8667	4.8135	5.0706	0	636	46	0.898312834727904	0.0304714989453929	0.898312834727904	364.141012669247	0	12.3519580869465						589	30	4	NaN	NaN	NaN	0.00094314	1	7912	65.933	46.677	1	151330			18489	1928	15603	16058	18489	18489		
TAIHEVMEQQTISIAK	16	Unmodified	_TAIHEVMEQQTISIAK_			0	0	0	P33993	P33993	P33993	MCM7	DNA replication licensing factor MCM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.972019	1797.92948	2.1818	0.0019635	-1.9853	-0.0017867	0.19645	0.0001768	899.970031248769	9.106	0.097531	9.106	9.0617	9.1592	0	267	31	1.14597988355104	0.0199679817951182	1.14597988355104	462.52042203903	0	8.05912869825198						250	12	4	NaN	NaN	NaN	0.00025719	1	27174	63.79	34.676	1	60643			18490	952	15604	16059	18490	18490		
TAIHTAAMDMLGGPGIESQCR	21	Unmodified	_TAIHTAAMDMLGGPGIESQCR_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	739.346741	2215.01839	0.636	0.00047023	-0.48169	-0.00035614	0.15431	0.00011409	739.681117960725	11.332	0.12418	11.332	11.296	11.42	0	642	34	0.894250814548268	0.0223426636256	0.894250814548268	540.600359766784	0	13.5067833292934						443	15	6	NaN	NaN	NaN	1.0512E-07	1	34847	88.796	84.946	1	164200			18491	2097	15605	16060	18491	18491		
TAITVEHLAIK	11	Unmodified	_TAITVEHLAIK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.355888	1194.69722	1.6018	0.00095847	0.93123	0.0005572	2.5331	0.0015157	598.356420445396	8.0237	0.16862	8.0237	7.9704	8.139	0	540	40	0.963152256458504	0.0262845144362098	0.963152256458504	390.229283373944	0	10.6493933472046						489	20	4	NaN	NaN	NaN	1.6802E-05	1	9296	114.39	98.812	1	316080			18492	3011	15606	16061	18492	18492		
TALAEAELEYNPEHVSR	17	Unmodified	_TALAEAELEYNPEHVSR_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.971061	1927.92757	1.4182	0.0013685	0.042151	4.0675E-05	1.4603	0.0014092	964.97084107737	9.4785	0.12412	9.4785	9.4342	9.5583	0	138	40	1.23157729878518	0.0258108508316472	1.23157729878518	496.811131013115	0	10.41194735136						391	15	4	NaN	NaN	NaN	2.3571E-07	1	30237	69.201	66.486	1	91299			18493	3037	15607	16062	18493	18493		
TALAEAELEYNPEHVSR	17	Unmodified	_TALAEAELEYNPEHVSR_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.6498	1927.92757	0.83695	0.0005387	1.2414	0.00079902	2.0783	0.0013377	643.985064612983	9.4874	0.13299	9.4874	9.4342	9.5672	0	555	43	0.953040030838688	0.0283201170105575	0.953040030838688	576.674064779072	0	17.1361920412988						228	16	2	NaN	NaN	NaN	0.00012711	1	30238	50.641	43.066	1	116180			18494	3037	15607	16062	18494	18494		
TALALAIAQELGSK	14	Unmodified	_TALALAIAQELGSK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.403566	1384.79258	0.85809	0.000595	0.61361	0.00042548	1.4717	0.0010205	693.403993382542	16.413	0.16849	16.413	16.36	16.528	0	393	79	1.0618830335572	0.0522612231093689	1.0618830335572	429.555908367097	0	21.1408568135026						832	20	4	NaN	NaN	NaN	1.0127E-11	1	14990	181.87	158.03	1	379610			18495	3331	15608	16063	18495	18495		
TALAMGADR	9	Unmodified	_TALAMGADR_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.229102	904.443651	0.72027	0.00032645	2.0599	0.00093361	2.7802	0.0012601	453.230200814504	4.2194	0.20392	4.2194	4.1751	4.379	0	714	34	0.845418525735192	0.0224234600075238	0.845418525735192	343.780535345094	0	9.11826373685409						337	24	3	NaN	NaN	NaN	0.00010411	1	2401	87.251	69.557	1	96614			18496	1003	15609	16064	18496	18496		
TALEMVQAAGTDR	13	Unmodified	_TALEMVQAAGTDR_			0	0	0	P0DPB6	P0DPB6	P0DPB6			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.837733	1361.66091	1.4013	0.00095543	0.56594	0.00038588	1.9672	0.0013413	681.838412025215	8.7422	0.31959	8.7422	8.6357	8.9553	0	513	64	0.981336640919867	0.0423950504136956	0.981336640919867	397.039713858817	0	17.1526446515904						707	37	3	NaN	NaN	NaN	0.00039748	1	14248	44.82	36.818	1	175740			18497	620	15610	16065	18497	18497		
TALGVAELTVTDLFR	15	Unmodified	_TALGVAELTVTDLFR_			0	0	0	Q8NF37	Q8NF37	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.445963	1604.87737	1.462	0.0011746	-1.3658	-0.0010973	0.09619	7.7284E-05	803.444997489031	19.871	0.062061	19.871	19.853	19.915	0	384	52	1.06790610341098	0.034116624349938	1.06790610341098	431.40623532504	0	13.7822271319495						312	8	5	NaN	NaN	NaN	5.1912E-17	1	21755	150.44	134.83	1	153830			18498	2315	15611	16066	18498	18498		
TALIHDGLAR	10	Unmodified	_TALIHDGLAR_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	356.204974	1065.59309	-1.4274	-0.00050843	1.3328	0.00047476	-0.094537	-3.3675E-05	356.205509343342	5.2125	0.20396	5.2125	5.177	5.381	0	840	34	0.759569036796863	0.0225517630193636	0.759569036796863	462.251139482705	0	13.7243326781798						344	24	4	NaN	NaN	NaN	0.015022	1	5864	28.096	18.582	1	130850			18499	837	15612	16067	18499	18499		
TALIHDGLAR	10	Unmodified	_TALIHDGLAR_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.803823	1065.59309	1.3566	0.00072414	2.0377	0.0010877	3.3943	0.0018119	533.804842264531	5.2125	0.33695	5.2125	5.1681	5.5051	0	645	46	0.892219381832517	0.0304714989453929	0.892219381832517	361.989823407266	0	12.3628479125194						823	39	5	NaN	NaN	NaN	3.5393E-05	1	5866	134.66	107.71	1	880510			18500	837	15612	16067	18500	18500		
TALINSTGEEVAMR	14	Unmodified	_TALINSTGEEVAMR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.377223	1490.73989	2.0534	0.0015326	1.1261	0.00084047	3.1795	0.0023731	746.378710439375	8.8487	0.37269	8.8487	8.7156	9.0883	0	435	61	1.03374239103424	0.0402508992087349	1.03374239103424	417.87844470274	0	16.2709619970261						1349	43	6	NaN	NaN	NaN	8.551E-17	1	18254	197.3	166.38	1	1395400			18501	493	15613	16068	18501	18501		
TALLDAAGVASLLTTAEVVVTEIPK	25	Unmodified	_TALLDAAGVASLLTTAEVVVTEIPK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1241.70436	2481.39417	0.11633	0.00014444	0.19811	0.000246	0.31444	0.00039044	1242.20556783906	20.332	0.0088643	20.332	20.323	20.332	0	69	61	1.27715511956461	0.0396030331440058	1.27715511956461	514.374912831164	0	15.9501429460207						132	2	4	NaN	NaN	NaN	3.084E-13	1	36737	116.06	114.43	1	22933			18502	635	15614	16069	18502	18502		
TALLDAAGVASLLTTAEVVVTEIPK	25	Unmodified	_TALLDAAGVASLLTTAEVVVTEIPK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.138667	2481.39417	1.6952	0.0014038	0.035731	2.9591E-05	1.7309	0.0014334	828.473074379993	20.332	0.088664	20.332	20.315	20.403	0	363	211	1.08195024817156	0.140432576678838	1.08195024817156	653.63259107198	0	84.8387521705608						701	11	6	NaN	NaN	NaN	4.1387E-19	1	36738	200.13	198.71	1	369140			18503	635	15614	16069	18503	18503		
TALNLFFK	8	Unmodified	_TALNLFFK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.276378	952.538203	-0.67989	-0.0003245	-2.2283	-0.0010635	-2.9082	-0.001388	477.275273655553	14.568	0.18621	14.568	14.515	14.701	0	732	46	0.833184998970724	0.0306029596118851	0.833184998970724	338.549956719209	0	12.4349702225584						519	22	4	NaN	NaN	NaN	0.032689	1	3299	53.679	28.828	1	263400			18504	1241	15615	16070	18504	18504		
TALPTSGSSAGELELLAGEVPAR	23	Unmodified	_TALPTSGSSAGELELLAGEVPAR_			0	0	0	Q9Y6I3	Q9Y6I3	Q9Y6I3	EPN1	Epsin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1113.58425	2225.15394	0.84935	0.00094582	0.66059	0.00073562	1.5099	0.0016814	1114.0862023799	15.659	0.097529	15.659	15.615	15.712	0	129	34	1.23753038177212	0.0218249814515028	1.23753038177212	498.735741883305	0	8.7956614852701						302	12	4	NaN	NaN	NaN	2.8204E-09	1	34946	71.114	67.673	1	92499			18505	3466	15616	16071	18505	18505		
TALQEVYTLAEHR	13	Unmodified	_TALQEVYTLAEHR_			0	0	0	O15397	O15397	O15397	IPO8	Importin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.935212	1529.78381	-1.4761	-0.00075421	-0.79236	-0.00040485	-2.2685	-0.0011591	510.934975266966	12.077	0.17736	12.077	12.041	12.219	0	759	28	0.814815566123307	0.0183796540051641	0.814815566123307	493.950791487939	0	11.1419626975455						375	21	4	NaN	NaN	NaN	0.024195	1	19432	34.193	26.635	1	131100			18506	172	15617	16072	18506	18506		
TALQEVYTLAEHR	13	Unmodified	_TALQEVYTLAEHR_			0	0	0	O15397	O15397	O15397	IPO8	Importin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.89918	1529.78381	1.6695	0.0012787	1.3758	0.0010537	3.0453	0.0023324	765.900117007891	12.094	0.097559	12.094	12.05	12.148	0	351	25	1.08996939197032	0.0160360785549387	1.08996939197032	440.504111472402	0	6.48087789197047						160	12	3	NaN	NaN	NaN	3.1791E-05	1	19434	84.999	75.257	1	31698			18507	172	15617	16072	18507	18507		
TAMNVNDLFLAIAK	14	Unmodified	_TAMNVNDLFLAIAK_			0	0	0	P61020	P61020	P61020	RAB5B	Ras-related protein Rab-5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.910701	1519.80685	1.1124	0.00084641	-0.1668	-0.00012692	0.94557	0.00071949	760.911122119568	18.452	0.14193	18.452	18.408	18.55	0	426	34	1.03977710643793	0.0221211851351335	1.03977710643793	420.243966091623	0	8.94066095346415						275	17	4	NaN	NaN	NaN	0.0017547	1	19142	55.578	53.277	1	62565			18508	1323	15618	16073	18508	18508		
TAMNVNEIFMAIAK	14	Unmodified	_TAMNVNEIFMAIAK_			0	0	0	P51148	P51148	P51148	RAB5C	Ras-related protein Rab-5C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.896737	1551.77892	1.4391	0.001118	-1.432	-0.0011125	0.0071138	5.5267E-06	776.896077490149	18.364	0.1773	18.364	18.302	18.479	0	426	46	1.03977710643793	0.030161093191106	1.03977710643793	420.165813447209	0	12.1878623568778						612	21	5	NaN	NaN	NaN	7.7743E-18	1	20118	180.81	152.48	1	262490			18509	1179	15619	16074	18509	18509		
TAMNVNEIFMAIAK	14	Oxidation (M)	_TAMNVNEIFM(Oxidation (M))AIAK_	TAMNVNEIFM(1)AIAK	TAM(-79)NVNEIFM(79)AIAK	0	1	0	P51148	P51148	P51148	RAB5C	Ras-related protein Rab-5C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.894194	1567.77384	1.0899	0.00085549	-0.67931	-0.00053319	0.41063	0.0003223	784.894326197308	17.601	0.15072	17.601	17.548	17.699	0	405	37	1.05384839605172	0.0241138939536367	1.05384839605172	425.813484998684	0	9.74335707086163						427	18	5	NaN	NaN	NaN	5.0782E-05	1	20588	83.214	70.039	2	103110			18510	1179	15619	16075	18510	18510	430	
TAMSTPHVAEPAENEQDEQDENGAEASADLR	31	Unmodified	_TAMSTPHVAEPAENEQDEQDENGAEASADLR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1104.81129	3311.41204	2.1167	0.0023386	-0.4496	-0.00049673	1.6671	0.0018419	1105.47960954214	7.9083	0.08866	7.9083	7.864	7.9527	0	390	37	1.06389100039157	0.0240939446089616	1.06389100039157	641.824619926903	0	14.535405258147						245	11	4	NaN	NaN	NaN	0.0060273	1	38554	9.093	8.8742	1	41315			18511	846	15620	16076	18511	18511		
TANDMIHAENMR	12	Unmodified	_TANDMIHAENMR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.211582	1401.61292	-0.24763	-0.00011594	0.56791	0.0002659	0.32028	0.00014996	468.212250904941	4.9287	0.22167	4.9287	4.8135	5.0351	0	768	40	0.808687310729125	0.0265557785134225	0.808687310729125	490.637034560968	0	16.111602404811						384	26	4	NaN	NaN	NaN	9.4698E-05	1	15484	97.277	89.72	1	129500			18512	846	15621	16077	18512	18512		
TANEEEEIVHK	11	Unmodified	_TANEEEEIVHK_			0	0	0	Q6GMV2	Q6GMV2	Q6GMV2	SMYD5	SET and MYND domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.814781	1297.61501	2.1252	0.001381	-1.1219	-0.00072901	1.0033	0.00065198	649.813794080112	3.3237	0.07095	3.3237	3.306	3.3769	0	576	13	0.938871150116794	0.00809930648149604	0.938871150116794	380.046932455296	0	3.27852930929333						67	9	2	NaN	NaN	NaN	0.019314	1	12282	33.723	26.077	1	11837			18513	2032	15622	16078	18513	18513		
TANLAEANASEEDK	14	Unmodified	_TANLAEANASEEDK_			0	0	0	Q7Z6E9	Q7Z6E9	Q7Z6E9	RBBP6	E3 ubiquitin-protein ligase RBBP6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.836442	1461.65833	2.3932	0.0017514	-1.6077	-0.0011766	0.78552	0.00057487	731.836043966035	3.7317	0.07091	3.7317	3.7051	3.776	0	531	28	0.969216233931596	0.0181894169559895	0.969216233931596	391.866190616029	0	7.35420774284438						122	9	3	NaN	NaN	NaN	0.0051946	1	17308	47.57	43.043	1	20595			18514	2147	15623	16079	18514	18514		
TANLNLETR	9	Unmodified	_TANLNLETR_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.277638	1030.54072	0.74956	0.00038698	0.46553	0.00024034	1.2151	0.00062732	516.277421620726	5.3366	0.18629	5.3366	5.2391	5.4254	0	651	25	0.888155670855968	0.0162548450794181	0.888155670855968	360.497458699189	0	6.59775142462553						178	22	3	NaN	NaN	NaN	0.023342	1	5013	48.157	27.924	1	46490			18515	3261	15624	16080	18515	18515		
TAPGMGDQSGCYR	13	Unmodified	_TAPGMGDQSGCYR_			0	0	0	Q9BWF3;Q9BQ04	Q9BWF3	Q9BWF3	RBM4;RBM4B	RNA-binding protein 4;RNA-binding protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.290093	1398.56563	2.8722	0.0020113	0.32382	0.00022676	3.196	0.0022381	700.290135707978	3.9268	0.10632	3.9268	3.8914	3.9977	0	522	37	0.975277694896658	0.0242475250130607	0.975277694896658	394.483664145935	0	9.80772200951026						199	13	2	NaN	NaN	NaN	0.006013	1	15389	23.804	20.702	1	50288			18516	2778	15625	16081	18516	18516		
TAPLLLSYYLIK	12	Unmodified	_TAPLLLSYYLIK_			0	0	0	Q12769	Q12769	Q12769	NUP160	Nuclear pore complex protein Nup160	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.918321	1393.82209	0.55782	0.00038931	0.56979	0.00039766	1.1276	0.00078697	697.918808733805	18.275	0.07981	18.275	18.24	18.319	0	405	25	1.05384839605172	0.0160737100321473	1.05384839605172	426.278412137593	0	6.50176592319605						178	10	3	NaN	NaN	NaN	0.0073617	1	15271	50.297	42.739	1	45040			18517	1593	15626	16082	18517	18517		
TAPYVVTGSVDQTVK	15	Unmodified	_TAPYVVTGSVDQTVK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.914495	1563.81444	2.4672	0.0019316	-0.91409	-0.00071566	1.5531	0.0012159	782.913649207136	8.4051	0.097532	8.4051	8.3697	8.4672	0	330	37	1.10399226369747	0.0240309347429271	1.10399226369747	446.084290880281	0	9.71005217743675						243	12	3	NaN	NaN	NaN	0.00012577	1	20469	86.838	74.82	1	58802			18518	1060	15627	16083	18518	18518		
TAPYVVTGSVDQTVK	15	Unmodified	_TAPYVVTGSVDQTVK_			0	0	0	P43034	P43034	P43034	PAFAH1B1	Platelet-activating factor acetylhydrolase IB subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.914495	1563.81444	2.2305	0.0017463	-0.57982	-0.00045395	1.6507	0.0012923	782.914025638457	8.4051	0.18622	8.4051	8.3608	8.547	0	375	58	1.07392668217569	0.0381408649762871	1.07392668217569	433.935849753139	0	15.4113767061588						512	22	4	NaN	NaN	NaN	2.709E-06	1	20470	124.06	112.1	1	240270			18519	1060	15627	16083	18519	18519		
TAQEVETYR	9	Unmodified	_TAQEVETYR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.767103	1095.51965	1.4009	0.00076877	1.5694	0.00086121	2.9703	0.00163	548.768151959591	3.306	0.24837	3.306	3.2262	3.4746	0	660	34	0.882057989648486	0.0223643734856528	0.882057989648486	357.742391467601	0	9.07047444535976						464	29	3	NaN	NaN	NaN	0.00014137	1	6591	67.507	56.147	1	158270			18520	743	15628	16084	18520	18520		
TAQNFLSIFLK	11	Unmodified	_TAQNFLSIFLK_			0	0	0	Q6KC79	Q6KC79	Q6KC79	NIPBL	Nipped-B-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.363713	1280.71287	-0.032327	-2.0733E-05	0.092824	5.9534E-05	0.060497	3.8801E-05	641.363805128369	18.914	0.079783	18.914	18.869	18.949	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	388.292680162303	0	6.54980386654336						130	10	3	NaN	NaN	NaN	0.0019092	1	11796	34.953	31.345	1	25376			18521	2042	15629	16085	18521	18521		
TAQNHPMLVELK	12	Unmodified	_TAQNHPMLVELK_			0	0	0	Q9Y4Z0	Q9Y4Z0	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.914983	1379.72312	-0.48377	-0.00022298	1.2791	0.00058956	0.79534	0.00036659	461.249866617824	6.9239	0.19508	6.9239	6.8441	7.0392	0	744	64	0.82502364452135	0.0428262918246602	0.82502364452135	500.625880372488	0	25.9870734495717						421	23	4	NaN	NaN	NaN	0.028699	1	14817	43.306	20.253	1	118000			18522	3419	15630	16086	18522	18522		
TAQNHPMLVELK	12	Unmodified	_TAQNHPMLVELK_			0	0	0	Q9Y4Z0	Q9Y4Z0	Q9Y4Z0	LSM4	U6 snRNA-associated Sm-like protein LSm4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.868837	1379.72312	1.8034	0.0012459	0.25794	0.0001782	2.0613	0.0014241	690.869459735203	6.9151	0.18621	6.9151	6.8175	7.0037	0	465	43	1.01360860968299	0.0282106679353067	1.01360860968299	410.042697009055	0	11.4122731931389						274	22	3	NaN	NaN	NaN	0.0029441	1	14818	51.454	34.802	1	67612			18523	3419	15630	16086	18523	18523		
TASDMVSTSR	10	Unmodified	_TASDMVSTSR_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.745313	1053.47607	0.46815	0.00024706	0.93137	0.00049153	1.3995	0.00073859	527.745629166518	3.0666	0.14187	3.0666	3.0311	3.173	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	334.776402823647	0	6.62523772957678						159	17	2	NaN	NaN	NaN	0.0033936	1	5550	50.834	45.087	1	32854			18524	64	15631	16087	18524	18524		
TASESISNLSEAGSIK	16	Unmodified	_TASESISNLSEAGSIK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.401949	1592.78935	1.9217	0.0015323	-1.3621	-0.0010861	0.5596	0.00044623	797.401700604413	8.6002	0.15977	8.6002	8.5293	8.6891	0	393	46	1.0618830335572	0.0301236649306122	1.0618830335572	429.000927358182	0	12.1699657893288						431	19	5	NaN	NaN	NaN	5.6478E-07	1	21353	137.39	107.64	1	96973			18525	914	15632	16088	18525	18525		
TASNIIDVSAADSQGMEQHEYMDR	24	Unmodified	_TASNIIDVSAADSQGMEQHEYMDR_			0	0	0	Q6IAA8	Q6IAA8	Q6IAA8	LAMTOR1	Ragulator complex protein LAMTOR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	890.058641	2667.15409	2.7097	0.0024118	0.021243	1.8907E-05	2.7309	0.0024307	890.393091505262	10.764	0.062079	10.764	10.738	10.8	0	336	67	1.09998710857178	0.04410531539273	1.09998710857178	664.271317515184	0	26.6347630231702						229	8	4	NaN	NaN	NaN	0.0001653	1	37500	40.324	39.627	1	34551			18526	2036	15633	16089	18526	18526		
TASNVEEAFINTAK	14	Unmodified	_TASNVEEAFINTAK_			0	0	0	P61019	P61019	P61019	RAB2A	Ras-related protein Rab-2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.87537	1493.73619	2.0618	0.001542	0.52086	0.00038954	2.5826	0.0019315	747.875658338445	10.392	0.1951	10.392	10.33	10.525	0	441	115	1.02971785871157	0.0763397158657055	1.02971785871157	416.243896284646	0	30.8588809103143						1517	23	4	NaN	NaN	NaN	1.0715E-11	1	18351	157.74	141.86	1	459960			18527	1322	15634	16090	18527	18527		
TASTSFTNIAYDLCAK	16	Unmodified	_TASTSFTNIAYDLCAK_			0	0	0	Q7LGA3	Q7LGA3	Q7LGA3	HS2ST1	Heparan sulfate 2-O-sulfotransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.919452	1761.82435	2.6476	0.002335	2.9245	0.0025792	5.5721	0.0049142	881.922442280084	13.832	0.11526	13.832	13.779	13.895	0	282	40	1.13599383354359	0.0259780251845936	1.13599383354359	458.561916907002	0	10.4864416287771						201	14	3	NaN	NaN	NaN	4.0113E-05	1	26188	82.437	75.297	1	60697			18528	2124	15635	16091	18528	18528		
TASVFLLEK	9	Unmodified	_TASVFLLEK_			0	0	0	Q96J01	Q96J01	Q96J01	THOC3	THO complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.292225	1006.5699	-0.14439	-7.2814E-05	-2.2524	-0.0011358	-2.3967	-0.0012087	504.291120661799	11.092	0.097513	11.092	11.048	11.146	0	702	31	0.853568545818287	0.0203750522723063	0.853568545818287	346.567479671882	0	8.27271640782703						146	12	2	NaN	NaN	NaN	0.03518	1	4441	39.01	30.247	1	55114			18529	2564	15636	16092	18529	18529		
TASWLAAELSK	11	Unmodified	_TASWLAAELSK_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.816596	1175.61864	0.73406	0.00043222	-1.7697	-0.001042	-1.0356	-0.00060979	588.815886700402	12.378	0.13301	12.378	12.29	12.423	0	603	61	0.920633820089869	0.0405526946120233	0.920633820089869	373.071695160448	0	16.4333116947134						456	16	4	NaN	NaN	NaN	0.024386	1	8761	31.425	22.662	1	130850			18530	3058	15637	16093	18530	18530		
TATEEWGTEDWNEDLSETK	19	Unmodified	_TATEEWGTEDWNEDLSETK_			0	0	0	Q14157	Q14157	Q14157	UBAP2L	Ubiquitin-associated protein 2-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1120.97693	2239.93932	1.2872	0.0014429	-0.28424	-0.00031862	1.003	0.0011243	1121.47911647685	12.511	0.017722	12.511	12.502	12.52	0	159	16	1.21767724410157	0.00993133418594727	1.21767724410157	490.714652933286	0	4.00225201861053						28	3	2	NaN	NaN	NaN	0.027705	1	35090	22.724	20.483	1	4441.2			18531	1729	15638	16094	18531	18531		
TATESFASDPILYR	14	Unmodified	_TATESFASDPILYR_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.89102	1569.76749	1.6939	0.0013312	2.0857	0.0016392	3.7796	0.0029704	785.892806619293	11.624	0.29267	11.624	11.491	11.784	0	399	76	1.0578662689527	0.0501922855323891	1.0578662689527	427.432166479116	0	20.2802546742388						1378	34	4	NaN	NaN	NaN	8.3021E-12	1	20654	180.81	164.93	1	597680			18532	699	15639	16095	18532	18532		
TATESFASDPILYRPVAVALDTK	23	Unmodified	_TATESFASDPILYRPVAVALDTK_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.435595	2464.28496	1.1536	0.00094878	-1.3424	-0.001104	-0.18873	-0.00015522	822.76935301416	15.508	0.070936	15.508	15.464	15.535	0	528	16	0.971237000454584	0.0101052309650996	0.971237000454584	586.770699060442	0	6.10505307642052						136	9	4	NaN	NaN	NaN	2.5221E-09	1	36646	91.1	88.194	1	44836			18533	699	15640	16096	18533	18533		
TATESFASDPILYRPVAVALDTK	23	Unmodified	_TATESFASDPILYRPVAVALDTK_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1233.14975	2464.28496	0.79289	0.00097775	-0.34488	-0.00042529	0.44801	0.00055246	1233.65100719285	15.642	0.14186	15.642	15.579	15.721	0	63	85	1.28111162701928	0.0554518656540803	1.28111162701928	515.988362418862	0	22.3341329111902						901	17	5	NaN	NaN	NaN	0.029199	1	36647	30.959	30.703	1	223550			18534	699	15640	16096	18534	18534		
TATESFASDPILYRPVAVALDTK	23	Unmodified	_TATESFASDPILYRPVAVALDTK_			0	0	1	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.435595	2464.28496	1.3702	0.0011269	0.76679	0.00063064	2.137	0.0017575	822.770812013173	15.642	0.45235	15.642	15.455	15.908	1.7764E-15	525	160	0.973257487423603	0.106879061040952	0.973257487423603	587.991364860527	0	64.5707490448814						3797	52	7	NaN	NaN	NaN	4.4821E-24	1	36648	191.18	178.8	1	7139300			18535	699	15640	16096	18535	18535		
TATPQQAQEVHEK	13	Unmodified	_TATPQQAQEVHEK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.865337	1465.71612	3.0914	0.0022686	-2.3818	-0.0017479	0.70955	0.00052072	733.863595192982	2.2508	0.3902	2.2508	2.1976	2.5878	0	444	64	1.02770517576159	0.0422955594974614	1.02770517576159	415.503214206162	0	17.1001774947955						742	45	4	NaN	NaN	NaN	9.4945E-12	1	17447	162.23	137.41	1	170200			18536	1303	15641	16097	18536	18536		
TATPQQAQEVHEK	13	Unmodified	_TATPQQAQEVHEK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	489.579317	1465.71612	0.7825	0.00038309	0.49101	0.00024039	1.2735	0.00062348	489.579645858879	2.2508	0.39907	2.2508	2.1887	2.5878	0	768	79	0.808687310729125	0.0531374574601859	0.808687310729125	490.42763115676	0	32.2251592700223						1106	46	5	NaN	NaN	NaN	0.00015388	1	17449	79.311	59.987	1	542790			18537	1303	15641	16097	18537	18537		
TATQLAVNK	9	Unmodified	_TATQLAVNK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.271824	944.529095	0.3069	0.00014525	-0.98016	-0.00046388	-0.67327	-0.00031864	473.271437086472	3.2173	0.26601	3.2173	3.1552	3.4213	0	756	37	0.816857749704129	0.024507911533163	0.816857749704129	331.955695589447	0	9.95955638957025						348	31	3	NaN	NaN	NaN	0.0083642	1	3157	72.492	58.94	1	95443			18538	2679	15642	16098	18538	18538		
TATQTGHTLLEDYQIVDNSQR	21	Unmodified	_TATQTGHTLLEDYQIVDNSQR_			0	0	0	Q8N0X7	Q8N0X7	Q8N0X7	SPG20	Spartin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.390937	2389.15098	2.1315	0.0016996	2.3446	0.0018695	4.4761	0.0035692	797.394372641842	11.092	0.16849	11.092	11.057	11.225	0	411	43	1.04982941439551	0.028132878019673	1.04982941439551	634.36392887587	0	16.9994122725371						482	20	5	NaN	NaN	NaN	3.346E-06	1	36294	104.86	99.021	1	153020			18539	2235	15643	16099	18539	18539		
TATTQETDGFQVK	13	Unmodified	_TATTQETDGFQVK_			0	0	0	Q96GM5	Q96GM5	Q96GM5	SMARCD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.346446	1424.67834	2.2004	0.0015697	-2.6022	-0.0018563	-0.40176	-0.0002866	713.345304192372	5.576	0.1242	5.576	5.5494	5.6736	0	492	46	0.995464410099171	0.0302696119755409	0.995464410099171	402.576604593901	0	12.241359397544						266	15	3	NaN	NaN	NaN	4.0805E-05	1	16219	115.41	102.24	1	65850			18540	2544	15644	16100	18540	18540		
TATVYPEPQNK	11	Unmodified	_TATVYPEPQNK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.31696	1246.61937	2.3807	0.0014863	-1.8912	-0.0011807	0.48948	0.00030559	624.315875115866	4.113	0.22168	4.113	4.0154	4.2371	0	594	49	0.926715457081489	0.0324376543962731	0.926715457081489	375.288014473124	0	13.1361388433951						546	26	3	NaN	NaN	NaN	0.0050632	1	10820	58.916	46.32	1	190280			18541	1106	15645	16101	18541	18541		
TAVCDIPPR	9	Unmodified	_TAVCDIPPR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885	P04350;P07437;P68371;Q3ZCM7;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.763309	1027.51206	0.45262	0.00023299	-0.21104	-0.00010864	0.24158	0.00012435	514.763265068178	5.7534	0.75385	5.7534	5.576	6.3299	0	741	58	0.827064408645228	0.0387637552095295	0.827064408645228	335.713899630323	0	15.7346045721194						673	86	2	NaN	NaN	NaN	0.00012873	1	4920	88.921	44.154	1	652280			18542	1449;560;512;2761;1936	15646	16102	18542	18542		
TAVCDIPPR	9	Unmodified	_TAVCDIPPR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885	P04350;P07437;P68371;Q3ZCM7;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.763309	1027.51206	-0.056417	-2.9041E-05	0.34149	0.00017579	0.28507	0.00014674	514.763603905616	6.454	0.43449	6.454	6.2767	6.7111	0	741	46	0.827064408645228	0.0306029596118851	0.827064408645228	335.713897173546	0	12.4220541096426						480	50	2	NaN	NaN	NaN	0.0081985	1	4921	39.01	21.614	1	286910			18543	1449;560;512;2761;1936	15646	16102	18543	18543		
TAVCDIPPR	9	Unmodified	_TAVCDIPPR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885	P04350;P07437;P68371;Q3ZCM7;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.763309	1027.51206	0.53891	0.00027741	0.12391	6.3784E-05	0.66282	0.00034119	514.763649607914	4.7425	0.26601	4.7425	4.6273	4.8933	0	738	40	0.829104889055312	0.0265225632029411	0.829104889055312	336.54214999827	0	10.7657795311678						444	31	3	NaN	NaN	NaN	0.00014747	1	4923	99.305	70.203	1	280010			18544	1449;560;512;2761;1936	15646	16102	18544	18544		
TAVCDIPPR	9	Unmodified	_TAVCDIPPR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885	P04350;P07437;P68371;Q3ZCM7;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.763309	1027.51206	0.54119	0.00027858	0.24548	0.00012636	0.78667	0.00040495	514.763579058782	4.4233	0.062073	4.4233	4.379	4.4411	0	735	16	0.831145085810763	0.0102038209152703	0.831145085810763	337.370286174023	0	4.14183521147231						75	8	2	NaN	NaN	NaN	0.001223	1	4924	72.038	41.477	1	48814			18545	1449;560;512;2761;1936	15646	16102	18545	18545		
TAVCDIPPR	9	Unmodified	_TAVCDIPPR_			0	0	0	P04350;P07437;A6NNZ2;P68371;Q3ZCM7;Q9BVA1;Q13885	P04350;P07437;P68371;Q3ZCM7;Q9BVA1	P68371	TUBB4A;TUBB;TUBB4B;TUBB8;TUBB2B;TUBB2A	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-2B chain;Tubulin beta-2A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.763309	1027.51206	1.2369	0.00063671	-0.22919	-0.00011798	1.0077	0.00051873	514.763573960421	4.4677	0.46109	4.4677	4.3701	4.8312	0	732	61	0.833184998970724	0.0407727738696773	0.833184998970724	338.198309903551	0	16.5500857910778						1124	53	4	NaN	NaN	NaN	0.00079469	1	4925	88.921	58.359	1	784390			18546	1449;560;512;2761;1936	15646	16102	18546	18546		
TAVDGPDLEMLTGQER	16	Unmodified	_TAVDGPDLEMLTGQER_			0	0	0	Q14318	Q14318	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.414533	1730.81451	2.4934	0.0021603	1.6786	0.0014543	4.1719	0.0036146	866.416517487593	13.292	0.14187	13.292	13.212	13.354	0	348	55	1.09197348738011	0.036061308536395	1.09197348738011	440.854067444995	0	14.5587550699614						730	17	4	NaN	NaN	NaN	2.9937E-08	1	25342	122.2	63.884	1	292240			18547	1746	15647	16103	18547	18547		
TAVDSGIPLLTNFQVTK	17	Unmodified	_TAVDSGIPLLTNFQVTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.999881	1802.97781	-1.0911	-0.00065682	-0.83864	-0.00050486	-1.9297	-0.0011617	602.333057628666	17.06	0.25715	17.06	16.901	17.158	0	618	28	0.910492137470517	0.0182626235094615	0.910492137470517	551.201277798977	0	11.0559784100309						352	30	3	NaN	NaN	NaN	0.0293	1	27304	66.953	60.206	1	77436			18548	922	15648	16104	18548	18548		
TAVDSGIPLLTNFQVTK	17	Unmodified	_TAVDSGIPLLTNFQVTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.496184	1802.97781	1.3661	0.0012329	0.29422	0.00026553	1.6603	0.0014984	902.497257098072	17.078	0.5143	17.078	16.785	17.3	0	294	100	1.12800004657306	0.0659352175992063	1.12800004657306	455.253948887501	0	26.6110522548202						3107	59	5	NaN	NaN	NaN	4.5703E-10	1	27305	135.24	116.43	1	2824900			18549	922	15648	16104	18549	18549		
TAVDSLVAYSVK	12	Unmodified	_TAVDSLVAYSVK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.84281	1251.67107	1.6663	0.0010445	0.65711	0.0004119	2.3234	0.0014564	626.842699307765	11.083	0.133	11.083	11.021	11.154	0	507	67	0.985374541851584	0.0444415161017796	0.985374541851584	399.025281420139	0	17.9964954604249						475	16	4	NaN	NaN	NaN	0.0073192	1	10971	44.598	34.51	1	177630			18550	1567	15649	16105	18550	18550		
TAVETAVLLLR	11	Unmodified	_TAVETAVLLLR_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.363713	1184.71287	1.4254	0.00084576	-0.88004	-0.00052218	0.54533	0.00032358	593.363338467023	14.506	0.23055	14.506	14.453	14.684	0	513	64	0.981336640919867	0.0424243792604825	0.981336640919867	397.635103802302	0	17.1902502643511						686	27	4	NaN	NaN	NaN	2.8626E-12	1	9010	166.61	130.04	1	476630			18551	1129	15650	16106	18551	18551		
TAVIDHHNYDISDLGQHTLIVADTENLLK	29	Unmodified	_TAVIDHHNYDISDLGQHTLIVADTENLLK_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	812.166382	3244.63642	0.93126	0.00075634	-0.66638	-0.00054122	0.26488	0.00021513	812.416226874403	15.269	0.097535	15.269	15.234	15.331	0	582	31	0.934820374997243	0.0202566836468107	0.934820374997243	752.008907229797	0	16.2953300342674						373	12	6	NaN	NaN	NaN	4.5214E-07	1	38498	83.701	83.102	1	126290			18552	1011	15652	16107	18552	18552		
TAVIDHHNYDISDLGQHTLIVADTENLLK	29	Unmodified	_TAVIDHHNYDISDLGQHTLIVADTENLLK_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	812.166382	3244.63642	1.7182	0.0013955	1.1402	0.00092607	2.8585	0.0023216	812.417971832554	15.269	0.088648	15.269	15.234	15.322	0	411	31	1.04982941439551	0.0200976833254141	1.04982941439551	844.527019003673	0	16.1674233498829						229	11	3	NaN	NaN	NaN	3.6313E-15	1	38499	110.95	110.22	1	131120			18553	1011	15652	16107	18553	18553		
TAVSCLSQNDWK	12	Unmodified	_TAVSCLSQNDWK_			0	0	0	Q96GG9	Q96GG9	Q96GG9	DCUN1D1	DCN1-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.829908	1407.64526	1.8498	0.0013038	-0.12877	-9.0761E-05	1.721	0.001213	704.829267062446	7.8197	0.204	7.8197	7.7309	7.935	0	486	49	0.999498404980629	0.0322808922550346	0.999498404980629	404.255010180671	0	13.0562613828814						285	24	2	NaN	NaN	NaN	0.0007048	1	15686	71.066	61.552	1	96694			18554	2542	15653	16108	18554	18554		
TAVTGSLSENDPLR	14	Unmodified	_TAVTGSLSENDPLR_			0	0	0	Q8NEJ9	Q8NEJ9	Q8NEJ9	NGDN	Neuroguidin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.372995	1458.73144	1.1432	0.00083497	-0.47939	-0.00035013	0.66382	0.00048483	730.372751347939	8.6002	0.14187	8.6002	8.5293	8.6712	0	492	25	0.995464410099171	0.0161382113226246	0.995464410099171	402.486223112294	0	6.52500245828395						264	17	3	NaN	NaN	NaN	0.00015709	1	17234	78.043	63.587	1	61585			18555	2311	15654	16109	18555	18555		
TAVVVGTITDDVR	13	Unmodified	_TAVVVGTITDDVR_			0	0	0	Q07020	Q07020	Q07020	RPL18	60S ribosomal protein L18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.369724	1344.72489	1.8795	0.0012656	0.6174	0.00041574	2.4969	0.0016814	673.370913601548	10.002	0.43449	10.002	9.8864	10.321	0	495	91	0.993446994398923	0.0604765456253392	0.993446994398923	401.990319610783	0	24.4713467773843						1591	50	5	NaN	NaN	NaN	1.6535E-07	1	13753	147.19	123.07	1	1329600			18556	1565	15655	16110	18556	18556		
TAWNPLGEAAPPGELYR	17	Unmodified	_TAWNPLGEAAPPGELYR_			0	0	0	Q9BW71	Q9BW71	Q9BW71	HIRIP3	HIRA-interacting protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.462675	1840.9108	1.8661	0.0017195	-1.1122	-0.0010248	0.75392	0.00069471	921.460965533085	14.4	0.11525	14.4	14.347	14.462	0	249	22	1.15795408347545	0.0139612606288984	1.15795408347545	467.269709858162	0	5.63379351255418						170	14	3	NaN	NaN	NaN	0.0053526	1	28251	53.773	47.87	1	44772			18557	2774	15656	16111	18557	18557		
TAWVFDDK	8	Unmodified	_TAWVFDDK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.23745	980.460347	0.12727	6.2522E-05	0.080645	3.9616E-05	0.20792	0.00010214	491.237106969597	9.842	0.22164	9.842	9.7889	10.01	0	735	31	0.831145085810763	0.0204033881937532	0.831145085810763	337.584212217659	0	8.28719539770884						418	26	4	NaN	NaN	NaN	0.0088866	1	3849	45.489	36.726	1	134760			18558	527	15657	16112	18558	18558		
TCATVTIGGINIAEALVSK	19	Unmodified	_TCATVTIGGINIAEALVSK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.519333	1917.02411	1.5299	0.001468	-0.19792	-0.00018991	1.332	0.0012781	960.021094712324	17.841	0.17732	17.841	17.796	17.974	0	210	40	1.18386433251387	0.025885345726578	1.18386433251387	477.583408773839	0	10.4424225900426						602	21	5	NaN	NaN	NaN	6.5684E-11	1	30001	125.75	116.18	1	210420			18559	2108	15658	16113	18559	18559		
TCDGVQCAFEELVEK	15	Unmodified	_TCDGVQCAFEELVEK_			0	0	0	Q9NP72	Q9NP72	Q9NP72	RAB18	Ras-related protein Rab-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.895119	1783.77569	2.4151	0.0021565	-0.65855	-0.00058801	1.7566	0.0015685	892.895022771085	15.473	0.13319	15.473	15.42	15.553	0	327	46	1.10599442759226	0.0300200623278843	1.10599442759226	446.409293405679	0	12.1169098844012						495	16	5	NaN	NaN	NaN	3.0084E-07	1	26781	132.9	128.66	1	128250			18560	2976	15659	16114	18560	18560		
TCDISFSDPDDLLNFK	16	Unmodified	_TCDISFSDPDDLLNFK_			0	0	0	P61081	P61081	P61081	UBE2M	NEDD8-conjugating enzyme Ubc12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.927474	1885.84039	1.419	0.0013394	1.4527	0.0013712	2.8717	0.0027106	944.430441590996	17.14	0.16845	17.14	17.078	17.246	0	240	73	1.16393748060522	0.0478902453991759	1.16393748060522	469.600491617356	0	19.3217274620583						985	20	5	NaN	NaN	NaN	1.5075E-07	1	29278	128.57	126.43	1	379180			18561	1326	15660	16115	18561	18561		
TCEEHQLCVVAVLPHILDTGAAGR	24	Unmodified	_TCEEHQLCVVAVLPHILDTGAAGR_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	662.333624	2645.30539	0.81798	0.00054178	-1.3172	-0.00087245	-0.49925	-0.00033067	662.583644193396	15.508	0.1686	15.508	15.42	15.588	0	591	34	0.928742107665821	0.0222900711025618	0.928742107665821	747.841420259584	0	17.9484038609186						562	20	5	NaN	NaN	NaN	4.3837E-07	1	37417	100.36	95.525	1	145020			18562	1811	15661	16116	18562	18562		
TCEEHQLCVVAVLPHILDTGAAGR	24	Unmodified	_TCEEHQLCVVAVLPHILDTGAAGR_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	882.77574	2645.30539	2.6191	0.0023121	1.3707	0.00121	3.9898	0.0035221	883.447398950449	15.5	0.19521	15.5	15.402	15.597	0	312	76	1.11600111266355	0.0499715173158064	1.11600111266355	673.970873460866	0	30.1785964111781						803	23	5	NaN	NaN	NaN	0.02241	1	37418	27.344	26.646	1	258890			18563	1811	15661	16116	18563	18563		
TCEESSFCK	9	Unmodified	_TCEESSFCK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.223356	1146.43216	1.3503	0.00077535	-1.2941	-0.00074309	0.056173	3.2256E-05	574.223269153731	2.9158	0.39014	2.9158	2.8804	3.2705	0	663	34	0.880024865079826	0.0223705821148275	0.880024865079826	356.720857453466	0	9.06798608810965						662	45	4	NaN	NaN	NaN	0.00048159	1	7957	65.156	62.557	1	160930			18564	1771	15662	16117	18564	18564		
TCESDTLEALLLTASERPK	19	Unmodified	_TCESDTLEALLLTASERPK_			0	0	1	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.028059	2133.06235	0.52179	0.00037153	-0.23618	-0.00016817	0.28561	0.00020336	712.36153033275	16.333	0.15964	16.333	16.289	16.448	0	459	52	1.01763759082241	0.0342534486123975	1.01763759082241	615.338392828023	0	20.7121495983027						341	19	4	NaN	NaN	NaN	4.782E-05	1	33782	71.912	69.671	1	99697			18565	3121	15663	16118	18565	18565		
TCFIILSK	8	Unmodified	_TCFIILSK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.275521	980.536489	-0.14547	-7.1468E-05	-1.6115	-0.00079168	-1.757	-0.00086315	491.274905945659	11.216	0.14188	11.216	11.163	11.305	0	705	40	0.851531465363931	0.0264857303381943	0.851531465363931	345.864135850987	0	10.7576344602684						399	17	4	NaN	NaN	NaN	0.012198	1	3858	74.486	43.925	1	140290			18566	209	15664	16119	18566	18566		
TCFVDCLIEQTHPEIR	16	Unmodified	_TCFVDCLIEQTHPEIR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.47714	2016.93973	1.9566	0.0019751	0.71745	0.00072425	2.674	0.0026994	1009.9795695407	14.267	0.1773	14.267	14.196	14.373	0	177	67	1.2057522832638	0.0437188805283268	1.2057522832638	486.240036824667	0	17.6303792852747						763	21	5	NaN	NaN	NaN	0.053129	1	31929	27.357	25.769	1	197400			18567	1796	15665	16120	18567	18567		
TCFYAEQGGQIYDEGYLVK	19	Unmodified	_TCFYAEQGGQIYDEGYLVK_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.01207	2240.00958	1.4108	0.0015815	-0.59597	-0.00066809	0.81484	0.00091345	1121.51291855065	13.132	0.053217	13.132	13.114	13.167	0	159	28	1.21767724410157	0.0178764027119285	1.21767724410157	490.714558977113	0	7.20405272856487						106	7	3	NaN	NaN	NaN	6.9692E-05	1	35093	66.485	65.391	1	16600			18568	1136	15666	16121	18568	18568		
TCGDVLDNLK	10	Unmodified	_TCGDVLDNLK_			0	0	0	P52788	P52788	P52788	SMS	Spermine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.776613	1133.53867	1.5477	0.00087872	0.53243	0.0003023	2.0801	0.001181	567.777061227463	8.68	0.21304	8.68	8.6268	8.8399	0	582	49	0.934820374997243	0.0324196809968852	0.934820374997243	378.983603813864	0	13.1431961340505						627	25	4	NaN	NaN	NaN	4.6625E-05	1	7626	120.33	102.94	1	266940			18569	1222	15667	16122	18569	18569		
TCGFDFTGAVEDISK	15	Unmodified	_TCGFDFTGAVEDISK_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.87197	1645.72939	2.2423	0.0018474	2.0948	0.0017258	4.337	0.0035732	823.872763009754	14.95	0.26603	14.95	14.879	15.145	0	354	76	1.08796502040166	0.0501507801962666	1.08796502040166	439.416137785757	0	20.2553039183651						1282	31	6	NaN	NaN	NaN	3.6147E-24	1	22902	217.24	200.95	1	977910			18570	482	15668	16123	18570	18570		
TCHSFIINEK	10	Unmodified	_TCHSFIINEK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.872895	1247.59686	-0.24768	-0.00010325	-1.7822	-0.00074296	-2.0299	-0.00084621	416.872302505977	5.044	0.18619	5.044	4.9997	5.1859	0	858	43	0.747263789720611	0.0287282633149519	0.747263789720611	453.916450384766	0	17.4506399065816						360	22	4	NaN	NaN	NaN	0.0020926	1	10847	88.181	46.385	1	104590			18571	21	15669	16124	18571	18571		
TCLHAILNILEK	12	Unmodified	_TCLHAILNILEK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.900137	1423.78572	1.6922	0.0012064	-1.3061	-0.00093113	0.3861	0.00027525	712.899300236886	14.453	0.097549	14.453	14.418	14.515	0	414	31	1.04781950764076	0.0201032305459359	1.04781950764076	423.752122935854	0	8.13001338454734						188	12	3	NaN	NaN	NaN	0.00014785	1	16208	80.623	68.666	1	44636			18572	2422	15670	16125	18572	18572		
TCLHAILNILEK	12	Unmodified	_TCLHAILNILEK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.602517	1423.78572	-0.27283	-0.00012976	1.6785	0.00079828	1.4056	0.00066852	475.938293953219	14.462	0.097549	14.462	14.418	14.515	0	678	37	0.869855008346864	0.0244229125119191	0.869855008346864	527.667770150431	0	14.8153240046696						216	12	3	NaN	NaN	NaN	0.003007	1	16209	55.754	43.797	1	46165			18573	2422	15670	16125	18573	18573		
TCLLISYTTNK	11	Unmodified	_TCLLISYTTNK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.34212	1312.66969	1.6436	0.0010804	0.35848	0.00023564	2.002	0.001316	657.342159136158	10.126	0.20396	10.126	10.055	10.259	0	531	40	0.969216233931596	0.0262699700789047	0.969216233931596	392.282953704841	0	10.6325720675226						364	24	2	NaN	NaN	NaN	3.8432E-08	1	12736	150.53	136.54	1	261460			18574	1316	15671	16126	18574	18574		
TCLLIVFSK	9	Unmodified	_TCLLIVFSK_			0	0	0	P61586;P08134;P62745	P61586	P61586	RHOA;RHOC;RHOB	Transforming protein RhoA;Rho-related GTP-binding protein RhoC;Rho-related GTP-binding protein RhoB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.809728	1079.6049	0.32105	0.00017363	-1.8064	-0.00097694	-1.4854	-0.00080331	540.808953524673	14.648	0.18623	14.648	14.595	14.781	0	645	43	0.892219381832517	0.0284420373903148	0.892219381832517	361.929885793325	0	11.5375473275007						573	22	4	NaN	NaN	NaN	0.0023649	1	6205	72.042	63.859	1	289290			18575	574	15672	16127	18575	18575		
TCNCETEDYGEK	12	Unmodified	_TCNCETEDYGEK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.279588	1504.54462	2.9947	0.0022558	-2.3799	-0.0017927	0.61479	0.00046311	753.278126621568	2.6498	0.42564	2.6498	2.6143	3.04	0	495	76	0.993446994398923	0.0504424030257907	0.993446994398923	401.55561460726	0	20.3890396402517						1507	49	5	NaN	NaN	NaN	3.4621E-07	1	18642	112.7	99.528	1	451040			18576	1509	15673	16128	18576	18576		
TCPVIISSTAHYSK	14	Unmodified	_TCPVIISSTAHYSK_			0	0	0	Q8IYQ7	Q8IYQ7	Q8IYQ7	THNSL1	Threonine synthase-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.395415	1562.77628	2.6125	0.002044	-1.045	-0.00081758	1.5676	0.0012265	782.394537147067	6.0372	0.053213	6.0372	6.0106	6.0638	0	291	19	1.12999890578964	0.0119923306921799	1.12999890578964	456.595319271344	0	4.84570563134929						54	7	2	NaN	NaN	NaN	0.00016841	1	20444	71.219	69.235	1	10208			18577	2225	15674	16129	18577	18577		
TCSDDVVDYFK	11	Unmodified	_TCSDDVVDYFK_			0	0	0	Q96P11	Q96P11	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.789918	1347.56528	1.2788	0.00086291	1.468	0.00099057	2.7468	0.0018535	674.790872050775	11.403	0.097535	11.403	11.367	11.465	0	462	28	1.01562323939346	0.0181291645901349	1.01562323939346	410.954942383973	0	7.33566297090425						214	12	3	NaN	NaN	NaN	0.016063	1	13816	40.386	35.558	1	52351			18578	2591	15675	16130	18578	18578		
TCTDIKPEWLVK	12	Unmodified	_TCTDIKPEWLVK_			0	0	1	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.26216	1488.76465	-0.82525	-0.00041037	-1.0718	-0.00053298	-1.8971	-0.00094335	497.262268036522	9.78	0.088664	9.78	9.7445	9.8332	0	768	25	0.808687310729125	0.0163431521630455	0.808687310729125	490.356724730099	0	9.90985571321892						133	11	3	NaN	NaN	NaN	0.047527	1	18195	18.507	12.641	1	27421			18579	181	15676	16131	18579	18579		
TCTDIKPEWLVK	12	Unmodified	_TCTDIKPEWLVK_			0	0	1	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.389602	1488.76465	2.1936	0.0016351	1.2538	0.00093459	3.4474	0.0025697	745.39028004423	9.7711	0.097549	9.7711	9.7445	9.842	0	375	43	1.07392668217569	0.0280863584131199	1.07392668217569	434.127778364865	0	11.3537251496024						278	12	3	NaN	NaN	NaN	0.033189	1	18199	55.754	54.38	1	61832			18580	181	15676	16131	18580	18580		
TCTTVAFTQVNSEDK	15	Unmodified	_TCTTVAFTQVNSEDK_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.893434	1699.77231	3.0163	0.0025666	0.30207	0.00025703	3.3184	0.0028236	850.893929285396	7.3762	0.32806	7.3762	7.3142	7.6422	0	366	136	1.07994477139643	0.0901720853780228	1.07994477139643	436.061069099073	0	36.4097655679094						1668	38	6	NaN	NaN	NaN	7.3805E-56	1	24478	281.19	248.64	1	1560000			18581	1391	15677	16132	18581	18581		
TCVHTFFDHQDQVWGVK	17	Unmodified	_TCVHTFFDHQDQVWGVK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	526.748087	2102.96324	0.32512	0.00017125	-0.82583	-0.000435	-0.50071	-0.00026375	526.998414050306	10.817	0.14183	10.817	10.773	10.915	0	705	37	0.851531465363931	0.0244432719031649	0.851531465363931	686.592598963147	0	19.7086898908477						512	17	5	NaN	NaN	NaN	0.01389	1	33351	35.45	33.975	1	178980			18582	2830	15678	16133	18582	18582		
TCVHTFFDHQDQVWGVK	17	Unmodified	_TCVHTFFDHQDQVWGVK_			0	0	0	Q9GZS3	Q9GZS3	Q9GZS3	WDR61	WD repeat-containing protein 61;WD repeat-containing protein 61, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.995024	2102.96324	1.4166	0.00099446	0.824	0.00057845	2.2406	0.0015729	702.330420874289	10.817	0.088696	10.817	10.782	10.871	0	531	22	0.969216233931596	0.0141473237574097	0.969216233931596	586.113491661093	0	8.55530173228669						167	11	4	NaN	NaN	NaN	7.3364E-07	1	33352	73.502	66.295	1	36046			18583	2830	15678	16133	18583	18583		
TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK	34	Unmodified	_TDADSESDNSDNNTIFVQGLGEGVSTDQVGEFFK_			0	0	0	Q92804	Q92804	Q92804	TAF15	TATA-binding protein-associated factor 2N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1208.20284	3621.58669	1.5611	0.0018861	-0.90321	-0.0010913	0.65787	0.00079484	1208.86992650405	18.665	0.070923	18.665	18.63	18.701	0	306	55	1.12000185836644	0.0360067249718126	1.12000185836644	675.43285947255	0	21.7143614774217						274	9	5	NaN	NaN	NaN	0.0062469	1	38692	35.06	34.887	1	57837			18584	2434	15679	16134	18584	18584		
TDAGFTLR	8	Unmodified	_TDAGFTLR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.729792	879.445031	-2.3232	-0.0010239	-0.088843	-3.9156E-05	-2.412	-0.0010631	440.729623000209	6.7111	0.097556	6.7111	6.6668	6.7644	8.8818E-16	783	37	0.798467866007927	0.024531790781615	0.798467866007927	324.826548068454	0	9.97983420093004						122	12	2	NaN	NaN	NaN	0.051106	1	1999	47.349	21.126	1	41872			18585	753	15680	16135	18585	18585		
TDAPASALWDIMR	13	Unmodified	_TDAPASALWDIMR_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.855926	1445.6973	0.042274	3.06E-05	2.5174	0.0018222	2.5596	0.0018528	723.858990866959	17.06	0.23938	17.06	16.936	17.176	0	489	64	0.997481546940468	0.0423189375930296	0.997481546940468	403.335940952364	0	17.1118438897875						528	28	4	NaN	NaN	NaN	2.5608E-05	1	16853	76.255	69.508	1	142220			18586	3104	15681	16136	18586	18586		
TDAPLNIR	8	Unmodified	_TDAPLNIR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.250892	898.48723	-0.0397	-1.7875E-05	0.4899	0.00022058	0.4502	0.0002027	450.251446584412	6.1702	0.22169	6.1702	6.0372	6.2589	0	747	61	0.822982596624503	0.0408465318656115	0.822982596624503	334.69038695853	0	16.6114588717761						668	26	3	NaN	NaN	NaN	0.00069162	1	2296	109.11	92.56	1	236810			18587	1608	15682	16137	18587	18587		
TDAPQPDVK	9	Unmodified	_TDAPQPDVK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.745639	969.476725	0.16297	7.9162E-05	2.372	0.0011522	2.5349	0.0012313	485.74693647548	2.8981	0.23941	2.8981	2.8183	3.0577	0	762	55	0.812773098473386	0.0367465403567987	0.812773098473386	330.173826550449	0	14.9275927868226						388	28	2	NaN	NaN	NaN	0.0066121	1	3616	56.378	36.891	1	84940			18588	870	15683	16138	18588	18588		
TDAPQPDVKEEEEEKEEEK	19	Unmodified	_TDAPQPDVKEEEEEKEEEK_			0	0	2	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	753.676408	2258.0074	2.1562	0.0016251	-0.1901	-0.00014327	1.9661	0.0014818	754.010325913153	3.6342	0.11523	3.6342	3.5987	3.714	0	510	40	0.983355730988811	0.0262518066023084	0.983355730988811	594.396356852375	0	15.8680909801733						404	14	5	NaN	NaN	NaN	9.0545E-07	1	35252	65.212	61.141	1	117860			18589	870	15684	16139	18589	18589		
TDAPQPDVKEEEEEKEEEK	19	Unmodified	_TDAPQPDVKEEEEEKEEEK_			0	0	2	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	753.676408	2258.0074	1.8929	0.0014266	0.38036	0.00028667	2.2733	0.0017133	754.011151550672	3.6253	0.088643	3.6253	3.5987	3.6874	0	576	25	0.938871150116794	0.016200857536437	0.938871150116794	567.507333967611	0	9.79272338632268						193	11	4	NaN	NaN	NaN	0.0034046	1	35253	29.217	29.119	1	47764			18590	870	15684	16139	18590	18590		
TDASSASSFLDSDELER	17	Unmodified	_TDASSASSFLDSDELER_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.405417	1828.79628	1.6259	0.0014883	1.3061	0.0011956	2.9319	0.0026839	915.40664273098	11.899	0.25716	11.899	11.802	12.059	0	291	61	1.12999890578964	0.0399689530119671	1.12999890578964	456.01152492799	0	16.1294874883315						1112	30	5	NaN	NaN	NaN	1.4826E-25	1	27925	184.65	147.15	1	578190			18591	1753	15685	16140	18591	18591		
TDAVEALTALNHYQIR	16	Unmodified	_TDAVEALTALNHYQIR_			0	0	0	Q8WVV9	Q8WVV9	Q8WVV9	HNRNPLL	Heterogeneous nuclear ribonucleoprotein L-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.973407	1813.93226	1.8697	0.0016977	0.36961	0.0003356	2.2393	0.0020332	908.475429590915	13.921	0.1064	13.921	13.886	13.992	0	180	40	1.203763835057	0.0258533799036051	1.203763835057	485.809357005789	0	10.4337856825563						390	13	5	NaN	NaN	NaN	2.4393E-17	1	27580	168.05	161.19	1	137560			18592	2382	15686	16141	18592	18592		
TDCDIEDDRLAAMFR	15	Unmodified	_TDCDIEDDRLAAMFR_			0	0	1	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.938187	1826.79273	0.41548	0.00025342	-2.0538	-0.0012527	-1.6383	-0.00099925	609.93704179615	12.848	0.088706	12.848	12.822	12.91	0	690	34	0.86171403876517	0.0223923326891349	0.86171403876517	521.619737365542	0	13.5547086050102						228	11	4	NaN	NaN	NaN	0.024299	1	27887	34.779	32.796	1	57665			18593	1625	15687	16142	18593	18593		
TDCSPIQFESAWALTNIASGTSEQTK	26	Unmodified	_TDCSPIQFESAWALTNIASGTSEQTK_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	948.111511	2841.3127	1.3391	0.0012697	1.0543	0.0009996	2.3934	0.0022693	948.446695726343	18.169	0.070921	18.169	18.133	18.204	0	345	43	1.09397730668811	0.0280554094154091	1.09397730668811	660.432033269008	0	16.9369976608625						242	9	4	NaN	NaN	NaN	0.007842	1	37986	26.724	26.283	1	41302			18594	1207	15688	16143	18594	18594		
TDDCHPWVLPVVK	13	Unmodified	_TDDCHPWVLPVVK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.392676	1564.7708	1.5398	0.0012062	-1.1503	-0.00090117	0.38942	0.00030507	783.393072119093	12.139	0.26605	12.139	12.024	12.29	0	390	76	1.06389100039157	0.0502338424152609	1.06389100039157	429.878481315644	0	20.2976130827067						1129	31	5	NaN	NaN	NaN	0.0049995	1	20490	45.939	38.799	1	307800			18595	736	15689	16144	18595	18595		
TDDCHPWVLPVVK	13	Unmodified	_TDDCHPWVLPVVK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.597543	1564.7708	0.39169	0.0002047	0.15837	8.2761E-05	0.55005	0.00028746	522.597578686437	12.139	0.17737	12.139	12.059	12.236	0	639	31	0.896281965493857	0.0203101032426732	0.896281965493857	543.227856251261	0	12.3097577208082						539	21	5	NaN	NaN	NaN	0.0019389	1	20491	72.922	70.785	1	262760			18596	736	15689	16144	18596	18596		
TDDYLDQPCLETVNR	15	Unmodified	_TDDYLDQPCLETVNR_			0	0	0	P31150	P31150	P31150	GDI1	Rab GDP dissociation inhibitor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.914898	1837.81524	2.5275	0.0023251	0.59569	0.00054799	3.1232	0.0028731	920.41741459105	10.622	0.14185	10.622	10.569	10.711	0	285	58	1.13399579921816	0.0379678915865906	1.13399579921816	457.607571218731	0	15.3213924295088						528	17	4	NaN	NaN	NaN	2.0927E-09	1	28176	123.92	117.54	1	135400			18597	920	15690	16145	18597	18597		
TDDYLDQPCYETINR	15	Unmodified	_TDDYLDQPCYETINR_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.943995	1901.81016	-0.24975	-0.00015858	0.34208	0.0002172	0.092326	5.8622E-05	635.278730483506	9.9396	0.079799	9.9396	9.913	9.9928	0	711	49	0.847456455381371	0.032586506939132	0.847456455381371	512.836873936472	0	19.7196708397874						233	10	3	NaN	NaN	NaN	0.0025182	1	29630	55.754	55.545	1	41111			18598	1161	15691	16146	18598	18598		
TDDYLDQPCYETINR	15	Unmodified	_TDDYLDQPCYETINR_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.912355	1901.81016	2.8291	0.0026931	-0.73324	-0.00069798	2.0959	0.0019951	951.91148532468	9.9396	0.2128	9.9396	9.8864	10.099	0	282	112	1.13599383354359	0.0739070527874146	1.13599383354359	458.29828848121	0	29.8166018150862						1832	25	5	NaN	NaN	NaN	5.4668E-17	1	29632	178.52	162.24	1	1008000			18599	1161	15691	16146	18599	18599		
TDEAFFDSENDPEK	14	Unmodified	_TDEAFFDSENDPEK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.339014	1642.66348	2.0634	0.0016968	-0.047816	-3.9321E-05	2.0156	0.0016575	822.339413636819	8.547	0.15075	8.547	8.5027	8.6534	0	414	34	1.04781950764076	0.0221150800336967	1.04781950764076	423.208443998562	0	8.93215724818629						366	18	4	NaN	NaN	NaN	1.3906E-07	1	22818	108.2	96.84	1	112960			18600	2900	15692	16147	18600	18600		
TDEFQLHTNVNDGTEFGGSIYQK	23	Unmodified	_TDEFQLHTNVNDGTEFGGSIYQK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	867.401501	2599.18267	1.3344	0.0011574	0.97088	0.00084214	2.3053	0.0019996	867.736619092239	11.758	0.34584	11.758	11.713	12.059	0	480	40	1.00353128488872	0.026215536116896	1.00353128488872	606.104767037132	0	15.8334489917239						1045	40	6	NaN	NaN	NaN	8.7713E-42	1	37240	191.11	173.3	1	316410			18601	794	15693	16148	18601	18601		
TDEGIAYR	8	Unmodified	_TDEGIAYR_			0	0	0	P32119	P32119	P32119	PRDX2	Peroxiredoxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.724707	923.43486	0.61245	0.0002834	0.91708	0.00042435	1.5295	0.00070775	462.725293107683	3.8914	0.39015	3.8914	3.8026	4.1928	4.4409E-16	771	52	0.806643990516186	0.034741288932732	0.806643990516186	327.912376338505	0	14.1228333006048						744	45	4	NaN	NaN	NaN	4.6443E-05	1	2755	140.12	119.77	1	540240			18602	936	15694	16149	18602	18602		
TDEYLLAR	8	Unmodified	_TDEYLLAR_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.756007	979.497461	0.42578	0.00020895	-1.4812	-0.00072693	-1.0555	-0.00051798	490.755228351261	7.3142	0.35467	7.3142	7.19	7.5447	0	711	52	0.847456455381371	0.0346544452198196	0.847456455381371	344.214050276719	0	14.0757048618371						702	41	4	NaN	NaN	NaN	0.0018708	1	3829	89.123	68.464	1	268620			18603	1489	15695	16150	18603	18603		
TDFEEFFLR	9	Unmodified	_TDFEEFFLR_			0	0	0	Q9NVA1	Q9NVA1	Q9NVA1	UQCC1	Ubiquinol-cytochrome-c reductase complex assembly factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.287671	1202.56079	-0.77501	-0.00046678	-0.37007	-0.00022289	-1.1451	-0.00068967	602.287454892379	16.706	0.13301	16.706	16.661	16.794	0	609	28	0.916577990479294	0.0182524998058907	0.916577990479294	371.331604699427	0	7.39460265585603						248	16	3	NaN	NaN	NaN	0.0022344	1	9528	91.783	71.549	1	72774			18604	3062	15696	16151	18604	18604		
TDFFIGGEEGMAEK	14	Unmodified	_TDFFIGGEEGMAEK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.842681	1529.67081	1.1421	0.00087469	1.5685	0.0012012	2.7107	0.0020759	765.843974382905	11.917	0.2749	11.917	11.864	12.139	0	426	37	1.03977710643793	0.0241338680851122	1.03977710643793	420.219500111645	0	9.75355383350291						804	32	5	NaN	NaN	NaN	0.00031208	1	19408	78.864	69.887	1	361870			18605	3332	15697	16152	18605	18605		
TDFIITASHDGHVK	14	Unmodified	_TDFIITASHDGHVK_			0	0	0	Q96BP3	Q96BP3	Q96BP3	PPWD1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.891355	1539.76816	2.7839	0.0021461	-1.8897	-0.0014568	0.89422	0.00068934	770.889776483209	6.1968	0.079824	6.1968	6.1791	6.2589	0	348	25	1.09197348738011	0.0160316600123953	1.09197348738011	441.288402839143	0	6.47871557642264						119	10	3	NaN	NaN	NaN	1.6195E-05	1	19718	78.043	59.706	1	23717			18606	2485	15698	16153	18606	18606		
TDGALLVNAMFFK	13	Unmodified	_TDGALLVNAMFFK_			0	0	0	P50454	P50454	P50454	SERPINH1	Serpin H1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.873588	1425.73262	1.4127	0.0010085	-1.364	-0.00097376	0.048678	3.475E-05	713.872723105004	17.761	0.17733	17.761	17.708	17.885	0	459	85	1.01763759082241	0.0563279501059264	1.01763759082241	411.540748398514	0	22.7794717406352						717	21	4	NaN	NaN	NaN	4.0441E-05	1	16255	104.39	90.4	1	259480			18607	1164	15699	16154	18607	18607		
TDGCHAYLSK	10	Unmodified	_TDGCHAYLSK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.26113	1150.50771	1.4997	0.00086424	0.69882	0.0004027	2.1986	0.0012669	576.261706052262	2.4547	0.23056	2.4547	2.4281	2.6587	0	648	28	0.890187667287968	0.0182854326605286	0.890187667287968	360.825180700444	0	7.41174561991176						185	27	2	NaN	NaN	NaN	0.045772	1	8069	31.425	21.337	1	41318			18608	1516	15700	16155	18608	18608		
TDGEPGPQGWSPR	13	Unmodified	_TDGEPGPQGWSPR_			0	0	0	Q9H773	Q9H773	Q9H773	DCTPP1	dCTP pyrophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.318022	1382.62149	1.5653	0.0010837	-2.3111	-0.0016	-0.74581	-0.00051634	692.316112652725	6.5338	0.17733	6.5338	6.4363	6.6136	0	525	34	0.973257487423603	0.0222222853930807	0.973257487423603	393.710976284267	0	8.98956112892387						260	21	2	NaN	NaN	NaN	0.036321	1	14900	34.779	27.629	1	131170			18609	2912	15701	16156	18609	18609		
TDGTVEIYNLSANYFQEK	18	Unmodified	_TDGTVEIYNLSANYFQEK_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.49711	2090.97967	2.1879	0.0022896	-0.099706	-0.00010434	2.0882	0.0021853	1046.99855179245	15.473	0.17746	15.473	15.384	15.562	0	183	58	1.20177511391933	0.0377753473176443	1.20177511391933	484.518853418984	0	15.229861026293						607	21	4	NaN	NaN	NaN	5.3798E-07	1	33196	80.815	76.743	1	124350			18610	2465	15702	16157	18610	18610		
TDHLSWEWNLTIK	13	Unmodified	_TDHLSWEWNLTIK_			0	0	0	P52565	P52565	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.278979	1641.81511	-1.5957	-0.00087488	-1.5603	-0.0008555	-3.156	-0.0017304	548.278389683709	14.622	0.1596	14.622	14.577	14.737	0	765	28	0.810730346695089	0.018384767783428	0.810730346695089	491.17379396194	0	11.1382485928972						518	19	5	NaN	NaN	NaN	0.0032931	1	22806	70.389	67.718	1	126450			18611	1214	15703	16158	18611	18611		
TDHPEIGEGKPTPALSEEASSSSIR	25	Unmodified	_TDHPEIGEGKPTPALSEEASSSSIR_			0	0	1	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	649.568777	2594.246	1.3371	0.00086854	1.8779	0.0012198	3.215	0.0020884	649.819967308616	7.0481	0.16855	7.0481	7.0037	7.1723	0	498	28	0.991429299781895	0.0181642753536437	0.991429299781895	798.400435640948	0	14.6277352894871						283	20	4	NaN	NaN	NaN	0.00083574	1	37221	62.304	58.731	1	64824			18612	1915	15704	16159	18612	18612		
TDIQIALPSGCYGR	14	Unmodified	_TDIQIALPSGCYGR_			0	0	0	P33316	P33316	P33316	DUT	Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.885215	1549.75588	1.697	0.0013167	0.16421	0.00012741	1.8612	0.0014441	775.884844820959	12.148	0.32811	12.148	12.068	12.396	0	414	58	1.04781950764076	0.0381882446994148	1.04781950764076	423.420566943959	0	15.4317495554441						997	38	5	NaN	NaN	NaN	0.0024161	1	20043	63.908	53.658	1	429960			18613	946	15705	16160	18613	18613		
TDITYPAGFMDVISIDK	17	Unmodified	_TDITYPAGFMDVISIDK_			0	0	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.466235	1884.91792	2.0159	0.0019019	0.5686	0.00053645	2.5845	0.0024384	943.968599936979	18.328	0.22172	18.328	18.275	18.497	0	243	70	1.16194328902838	0.0458916612030629	1.16194328902838	468.797596599709	0	18.5154479389041						1584	26	7	NaN	NaN	NaN	1.8458E-06	1	29263	109.47	102.48	1	1339000			18614	1394	15706	16161	18614	18614		
TDITYPAGFMDVISIDK	17	Oxidation (M)	_TDITYPAGFM(Oxidation (M))DVISIDK_	TDITYPAGFM(1)DVISIDK	TDITYPAGFM(98)DVISIDK	0	1	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.463692	1900.91283	1.5256	0.0014515	1.761	0.0016756	3.2866	0.0031271	951.465563794699	15.712	0.097528	15.712	15.659	15.757	0	228	55	1.17191150690002	0.0358831313706358	1.17191150690002	472.790299166709	0	14.4765166276404						514	12	4	NaN	NaN	NaN	4.7112E-06	1	29616	98.167	95.082	1	288130			18615	1394	15706	16162	18615	18615	498	
TDITYPAGFMDVISIDK	17	Oxidation (M)	_TDITYPAGFM(Oxidation (M))DVISIDK_	TDITYPAGFM(1)DVISIDK	TDITYPAGFM(47)DVISIDK	0	1	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.463692	1900.91283	1.9783	0.0018823	1.3701	0.0013036	3.3485	0.0031859	951.966454293213	15.792	0.21285	15.792	15.739	15.952	0	225	64	1.17390432875292	0.0418665356179466	1.17390432875292	473.594274900484	0	16.8904322890098						889	25	6	NaN	NaN	NaN	0.00060415	1	29617	46.768	40.865	1	359290			18616	1394	15706	16162	18616	18616	498	
TDLCDHALHISHDEL	15	Unmodified	_TDLCDHALHISHDEL_			0	0	0	Q9Y2B0	Q9Y2B0	Q9Y2B0	CNPY2	Protein canopy homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.605426	1774.79445	-0.46506	-0.0002756	0.071735	4.251E-05	-0.39332	-0.00023309	592.60557283477	8.9021	0.10656	8.9021	8.8576	8.9642	0	729	31	0.835224628594324	0.0203977162825675	0.835224628594324	505.696419771139	0	12.3500334430536						272	13	4	NaN	NaN	NaN	0.0007482	1	26528	94.66	87.913	1	80405			18617	3341	15707	16163	18617	18617		
TDLDCIFGK	9	Unmodified	_TDLDCIFGK_			0	0	0	Q96BK5	Q96BK5	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.755149	1067.49575	-0.63134	-0.00033761	-0.40451	-0.00021631	-1.0359	-0.00055393	534.754996299694	12.077	0.10642	12.077	12.032	12.139	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	352.908170000532	0	7.42990191846411						140	13	3	NaN	NaN	NaN	0.058279	1	5892	31.952	15.495	1	30437			18618	2483	15708	16164	18618	18618		
TDLDLDGYVSGQEVK	15	Unmodified	_TDLDLDGYVSGQEVK_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.8965	1637.77845	1.5341	0.0012578	2.5004	0.00205	4.0344	0.0033078	819.898152960178	11.758	0.062056	11.758	11.722	11.784	0	342	25	1.09598084995137	0.016027243295812	1.09598084995137	442.671573965769	0	6.47347534986972						99	8	2	NaN	NaN	NaN	0.0055828	1	22705	58.338	52.95	1	43511			18619	3170	15709	16165	18619	18619		
TDLLLEPYNK	10	Unmodified	_TDLLLEPYNK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.324254	1204.63395	1.2719	0.00076737	-3.3722	-0.0020345	-2.1003	-0.0012671	603.322550781128	10.746	0.31034	10.746	10.605	10.915	0	573	46	0.940896116921038	0.0303703038284173	0.940896116921038	381.176134489894	0	12.3036271575677						567	36	3	NaN	NaN	NaN	1.4347E-05	1	9599	111.39	92.136	1	320730			18620	972	15710	16166	18620	18620		
TDLNPDNLQGGDDLDPNYVLSSR	23	Unmodified	_TDLNPDNLQGGDDLDPNYVLSSR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	840.061256	2517.16194	1.2802	0.0010755	-1.2494	-0.0010496	0.030855	2.592E-05	840.394468327643	14.329	0.14185	14.329	14.258	14.4	0	567	46	0.944945209309785	0.0303534869943584	0.944945209309785	570.819332131135	0	18.3358325998884						552	17	5	NaN	NaN	NaN	5.6907E-10	1	36909	117.33	108.57	1	125160			18621	668	15711	16167	18621	18621		
TDLNPDNLQGGDDLDPNYVLSSR	23	Unmodified	_TDLNPDNLQGGDDLDPNYVLSSR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1259.58825	2517.16194	1.3509	0.0017015	-1.1198	-0.0014105	0.23107	0.00029105	1260.08834162007	14.338	0.11525	14.338	14.285	14.4	0	60	67	1.28308947459206	0.0435514105448778	1.28308947459206	516.724059008357	0	17.538965191374						594	14	4	NaN	NaN	NaN	3.6837E-06	1	36910	52.481	51.967	1	131640			18622	668	15711	16167	18622	18622		
TDLVPAFQNLMK	12	Unmodified	_TDLVPAFQNLMK_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.865763	1375.71697	0.67896	0.00046771	-2.455	-0.0016912	-1.7761	-0.0012235	688.864169690379	16.227	0.41677	16.227	16.005	16.422	0	489	73	0.997481546940468	0.0484414451748214	0.997481546940468	403.530363913335	0	19.5969479935153						1159	48	5	NaN	NaN	NaN	0.0053224	1	14675	52.591	42.848	1	439120			18623	905	15712	16168	18623	18623		
TDMDNQIVVSDYAQMDR	17	Unmodified	_TDMDNQIVVSDYAQMDR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.93805	1999.86154	1.6404	0.0016419	0.81244	0.00081321	2.4528	0.0024551	1001.44014123008	11.695	0.3281	11.695	11.642	11.97	0	234	49	1.16792504164217	0.0318961142140304	1.16792504164217	471.013053565226	0	12.8633992911837						495	38	2	NaN	NaN	NaN	9.858E-19	1	31631	157.54	151.93	1	443720			18624	1175	15713	16169	18624	18624		
TDMDNQIVVSDYAQMDR	17	Oxidation (M)	_TDM(Oxidation (M))DNQIVVSDYAQMDR_	TDM(1)DNQIVVSDYAQMDR	TDM(110)DNQIVVSDYAQM(-110)DR	0	1	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.9355	2015.85646	2.1963	0.002216	-1.0308	-0.0010401	1.1655	0.0011759	1009.43607133962	10.41	0.11529	10.41	10.374	10.489	0	228	34	1.17191150690002	0.0219270684091772	1.17191150690002	472.594912090219	0	8.84249442574634						322	14	4	NaN	NaN	NaN	1.9088E-09	1	31902	114.5	110.52	2	64077			18625	1175	15713	16170	18625	18625	427;428	
TDMDNQIVVSDYAQMDR	17	Oxidation (M)	_TDMDNQIVVSDYAQM(Oxidation (M))DR_	TDMDNQIVVSDYAQM(1)DR	TDM(-84)DNQIVVSDYAQM(84)DR	0	1	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.9355	2015.85646	2.4627	0.0024847	-0.79387	-0.00080096	1.6688	0.0016837	1009.4362186895	9.7445	0.10641	9.7445	9.7002	9.8066	0	225	46	1.17390432875292	0.0298841232722196	1.17390432875292	473.398553459661	0	12.0513234187559						381	13	4	NaN	NaN	NaN	4.9731E-06	1	31903	84.102	78.714	2	81337			18626	1175	15713	16170	18626	18626	427;428	
TDMDNQIVVSDYAQMDR	17	2 Oxidation (M)	_TDM(Oxidation (M))DNQIVVSDYAQM(Oxidation (M))DR_	TDM(1)DNQIVVSDYAQM(1)DR	TDM(41)DNQIVVSDYAQM(41)DR	0	2	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.93296	2031.85137	2.1482	0.0021846	0.028	2.8474E-05	2.1762	0.0022131	1016.93284965208	8.3076	0.071	8.3076	8.281	8.352	0	225	43	1.17390432875292	0.0278822707169228	1.17390432875292	473.373061787321	0	11.2434340138043						160	9	2	NaN	NaN	NaN	0.0071738	1	32179	40.83	39.887	1	33895			18627	1175	15713	16171	18627	18627	427;428	
TDMELEVLR	9	Unmodified	_TDMELEVLR_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.281531	1104.54851	0.36414	0.00020147	2.2055	0.0012202	2.5696	0.0014217	553.282743543838	11.225	0.19512	11.225	11.172	11.367	1.7764E-15	639	46	0.896281965493857	0.0304714989453929	0.896281965493857	363.474393364167	0	12.3572826637997						357	23	2	NaN	NaN	NaN	0.00058474	1	6838	110.22	42.315	1	113990			18628	672	15714	16172	18628	18628		
TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK	35	Unmodified	_TDNAGDQHGGGGGGGGGAGAAGGGGGGENYDDPHK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	746.056091	2980.19526	2.4435	0.001823	-1.2538	-0.00093542	1.1897	0.00088756	746.305927935789	2.5079	0.079836	2.5079	2.4724	2.5523	0	471	46	1.00957851518677	0.0302278047766038	1.00957851518677	812.455084101564	0	24.3257293044096						279	10	4	NaN	NaN	NaN	0.00013438	1	38186	86.612	86.59	1	53505			18629	704	15715	16173	18629	18629		
TDPFIFPECPHVYFCGNTPSFGSK	24	Unmodified	_TDPFIFPECPHVYFCGNTPSFGSK_			0	0	0	P49005	P49005	P49005	POLD2	DNA polymerase delta subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	935.420963	2803.24106	0.43932	0.00041095	0.69069	0.00064609	1.13	0.001057	935.755809340136	16.28	0.070933	16.28	16.245	16.315	0	459	46	1.01763759082241	0.0302111061455164	1.01763759082241	614.386533673112	0	18.2395942824535						314	9	4	NaN	NaN	NaN	0.0053636	1	37903	21.21	20.801	1	60227			18630	1120	15716	16174	18630	18630		
TDPSTLTEEEVSK	13	Unmodified	_TDPSTLTEEEVSK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.343568	1434.67258	1.7067	0.001226	0.25187	0.00018093	1.9586	0.001407	718.344118704568	6.5693	0.21282	6.5693	6.4717	6.6845	0	498	31	0.991429299781895	0.0201811333938051	0.991429299781895	400.917894827399	0	8.16092233430578						300	25	2	NaN	NaN	NaN	0.0022509	1	16526	73.655	52.504	1	99688			18631	2083	15717	16175	18631	18631		
TDPTTLTDEEINR	13	Unmodified	_TDPTTLTDEEINR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.859917	1503.70528	2.2676	0.0017071	-0.14385	-0.0001083	2.1237	0.0015988	752.859669061881	7.8463	0.29257	7.8463	7.6956	7.9881	0	441	43	1.02971785871157	0.0281756225975058	1.02971785871157	416.218565587375	0	11.3887674403732						769	34	4	NaN	NaN	NaN	1.5683E-07	1	18621	115.41	93.368	1	433700			18632	656	15718	16176	18632	18632		
TDPVDIYK	8	Unmodified	_TDPVDIYK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.745108	949.475663	-0.031145	-1.4817E-05	3.5602	0.0016938	3.5291	0.0016789	475.74611683094	6.5959	0.21281	6.5959	6.5338	6.7466	0	714	46	0.845418525735192	0.030568952954407	0.845418525735192	343.5365664835	0	12.4217210994049						476	25	4	NaN	NaN	NaN	0.047806	1	3235	26.456	4.0701	1	142460			18633	1095	15719	16177	18633	18633		
TDQVIQSLIALVNDPQPEHPLR	22	Unmodified	_TDQVIQSLIALVNDPQPEHPLR_			0	0	0	P68036;A0A1B0GUS4	P68036	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.446605	2482.31799	0.30155	0.00024982	-0.55566	-0.00046033	-0.25411	-0.00021052	828.780149948661	19.073	0.062079	19.073	19.055	19.117	0	507	31	0.985374541851584	0.0201895069753196	0.985374541851584	595.287614655992	0	12.1969494217243						203	8	4	NaN	NaN	NaN	1.1402E-08	1	36741	90.806	75.497	1	51325			18634	1445	15720	16178	18634	18634		
TDQVIQSLIALVNDPQPEHPLR	22	Unmodified	_TDQVIQSLIALVNDPQPEHPLR_			0	0	0	P68036;A0A1B0GUS4	P68036	P68036	UBE2L3	Ubiquitin-conjugating enzyme E2 L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.446605	2482.31799	1.2472	0.0010333	-0.0088275	-7.3131E-06	1.2384	0.001026	828.780795492882	19.082	0.13299	19.082	19.038	19.171	0	393	79	1.0618830335572	0.0522612231093689	1.0618830335572	641.508167012068	0	31.5722168856878						854	16	6	NaN	NaN	NaN	7.0623E-23	1	36742	157.98	142.67	1	351930			18635	1445	15720	16178	18635	18635		
TDSEIALLEGLTVVYK	16	Unmodified	_TDSEIALLEGLTVVYK_			0	0	0	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.977293	1749.94003	1.2117	0.0010614	0.38113	0.00033386	1.5928	0.0013953	875.97692923433	19.055	0.10638	19.055	19.02	19.126	0	297	31	1.12600091227925	0.0199954725049127	1.12600091227925	454.552225831417	0	8.07191755756315						241	13	4	NaN	NaN	NaN	1.4501E-06	1	25892	83.214	69.436	1	55000			18636	1353	15721	16179	18636	18636		
TDSPSCEYSR	10	Unmodified	_TDSPSCEYSR_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.243135	1200.47172	1.2464	0.00074937	1.2537	0.00075381	2.5001	0.0015032	601.244118108668	2.6676	0.12417	2.6676	2.6143	2.7385	0	672	25	0.873923798053065	0.0162706422840635	0.873923798053065	354.058170949729	0	6.59182626689733						141	15	2	NaN	NaN	NaN	0.033796	1	9462	30.918	21.525	1	24918			18637	2947	15722	16180	18637	18637		
TDTESELDLISR	12	Unmodified	_TDTESELDLISR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.838453	1377.66235	1.6863	0.0011633	-0.15358	-0.00010594	1.5327	0.0010573	689.838946330766	10.844	0.31039	10.844	10.764	11.075	0	501	61	0.98941132619024	0.0403511222593885	0.98941132619024	400.259929852436	0	16.3237845954317						697	36	4	NaN	NaN	NaN	4.0617E-11	1	14730	150.21	130.95	1	278020			18638	656	15723	16181	18638	18638		
TDTGEPMGR	9	Unmodified	_TDTGEPMGR_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.213649	962.412745	0.1364	6.5774E-05	0.93964	0.00045311	1.076	0.00051888	482.214182010399	2.3217	0.40789	2.3217	2.2862	2.6941	0	795	37	0.790287188799094	0.0245420354301715	0.790287188799094	321.072304790893	0	9.97076504782882						699	47	3	NaN	NaN	NaN	0.0047803	1	3482	69.905	62.258	1	174240			18639	567	15724	16182	18639	18639		
TDTLEDLFPTTK	12	Unmodified	_TDTLEDLFPTTK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.84829	1379.68203	1.3158	0.00090902	-0.90906	-0.00062802	0.40674	0.00028099	690.847426778707	14.515	0.3192	14.515	14.302	14.622	0	495	49	0.993446994398923	0.0322853553889811	0.993446994398923	401.88669090217	0	13.0606410961348						963	37	5	NaN	NaN	NaN	5.1933E-17	1	14801	164.31	142.26	1	466680			18640	674	15725	16183	18640	18640		
TDTVLILCR	9	Unmodified	_TDTVLILCR_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.799891	1089.58523	1.0295	0.0005619	-0.83835	-0.00045757	0.19116	0.00010433	545.800140250327	10.374	0.23944	10.374	10.294	10.534	0	642	82	0.894250814548268	0.0548411235410415	0.894250814548268	362.71206718776	0	22.2438011381837						1044	28	4	NaN	NaN	NaN	1.2775E-12	1	6457	178.87	122.78	1	743390			18641	2950	15726	16184	18641	18641		
TDVAVQIISNIYHNFPEQR	19	Unmodified	_TDVAVQIISNIYHNFPEQR_			0	0	0	O60306	O60306	O60306	AQR	Intron-binding protein aquarius	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.718437	2243.13348	-0.37677	-0.00028209	0.47837	0.00035817	0.10161	7.6075E-05	749.052651605847	18.727	0.062071	18.727	18.71	18.772	0	564	25	0.946969335010767	0.0161941280103991	0.946969335010767	572.425532149048	0	9.78905229696488						97	8	3	NaN	NaN	NaN	0.0012585	1	35135	32.6	31.505	1	17630			18642	254	15727	16185	18642	18642		
TDVSTEHPPFYYNIHR	16	Unmodified	_TDVSTEHPPFYYNIHR_			0	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	494.737883	1974.92242	-0.84485	-0.00041798	0.76777	0.00037985	-0.077073	-3.8131E-05	494.73800437439	8.5027	0.14187	8.5027	8.414	8.5559	0	756	22	0.816857749704129	0.0142932978262608	0.816857749704129	658.914575278821	0	11.5296234502709						272	17	4	NaN	NaN	NaN	0.058571	1	31194	14.975	14.876	1	64108			18643	2128	15728	16186	18643	18643		
TDYIPLLDVDEK	12	Unmodified	_TDYIPLLDVDEK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.86394	1419.71333	1.3745	0.00097709	0.27168	0.00019313	1.6462	0.0011702	710.863912683113	15.358	0.17734	15.358	15.278	15.455	0	471	64	1.00957851518677	0.0423130912523418	1.00957851518677	408.298218874587	0	17.1124479508292						553	21	4	NaN	NaN	NaN	0.0029062	1	16088	44.598	37.458	1	287790			18644	869	15729	16187	18644	18644		
TDYMVGSYGPR	11	Unmodified	_TDYMVGSYGPR_			0	0	0	P52565	P52565	P52565	ARHGDIA	Rho GDP-dissociation inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.282063	1244.54957	2.4278	0.0015132	-0.1531	-9.5424E-05	2.2747	0.0014178	623.783177441875	7.7398	0.29271	7.7398	7.6245	7.9172	0	561	61	0.948993180460448	0.0404909431066049	0.948993180460448	384.316722881957	0	16.397743294193						1061	34	4	NaN	NaN	NaN	0.00073112	1	10755	99.855	94.107	1	439500			18645	1214	15730	16188	18645	18645		
TDYNASVSVPDSSGPER	17	Unmodified	_TDYNASVSVPDSSGPER_			0	0	0	P61978	P61978	P61978	HNRNPK	Heterogeneous nuclear ribonucleoprotein K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.902844	1779.79114	3.09	0.0027529	0.23843	0.00021242	3.3284	0.0029653	890.903032739812	7.0481	0.35482	7.0481	6.9683	7.3231	0	354	100	1.08796502040166	0.0661899417628178	1.08796502040166	439.139716772097	0	26.7165136137874						2211	41	6	NaN	NaN	NaN	6.8247E-19	1	26661	217.16	195.15	1	2944100			18646	1360	15731	16189	18646	18646		
TEAASDPQHPAASEGAAAAAASPPLLR	27	Unmodified	_TEAASDPQHPAASEGAAAAAASPPLLR_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	853.092891	2556.25684	2.4548	0.0020942	-1.234	-0.0010527	1.2208	0.0010415	853.425907276948	8.9198	0.23063	8.9198	8.769	8.9996	0	261	139	1.14997238118939	0.0919034870038662	1.14997238118939	694.613126719054	0	55.5120883843438						1947	27	4	NaN	NaN	NaN	5.5077E-21	1	37049	184.37	173.77	1	479050			18647	2647	15732	16190	18647	18647		
TEADMEEYIWENSSSER	17	Unmodified	_TEADMEEYIWENSSSER_			0	0	0	P82673	P82673	P82673	MRPS35	28S ribosomal protein S35, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.42857	2074.84258	2.1624	0.0022455	-1.2507	-0.0012987	0.91178	0.00094682	1038.92856710391	12.955	0.053203	12.955	12.928	12.981	0	246	28	1.1599488233373	0.0179501929154187	1.1599488233373	467.679775301335	0	7.23733842424662						129	7	3	NaN	NaN	NaN	0.016429	1	32941	54.309	54.186	1	25711			18648	1472	15733	16191	18648	18648		
TEAEIAHIALETLEGHQR	18	Unmodified	_TEAEIAHIALETLEGHQR_			0	0	0	O75955	O75955	O75955	FLOT1	Flotillin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.348232	2017.02287	0.86869	0.00058493	-0.97657	-0.00065757	-0.10788	-7.2641E-05	673.682071852137	14.223	0.15961	14.223	14.169	14.329	1.7764E-15	546	31	0.959108205975751	0.0202202547375568	0.959108205975751	580.162814591385	0	12.2311954242548						292	19	5	NaN	NaN	NaN	5.0844E-05	1	31934	90.376	79.891	1	104160			18649	373	15734	16192	18649	18649		
TEAEIALK	8	Unmodified	_TEAEIALK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.74765	873.480748	-2.354	-0.0010305	5.6099	0.0024557	3.2559	0.0014253	437.750541787329	5.31	0.23942	5.31	5.2391	5.4785	0	768	58	0.808687310729125	0.0388393098094783	0.808687310729125	329.018429366724	0	15.8019651621348						358	28	2	NaN	NaN	NaN	0.028342	1	1915	42.835	17.984	1	89075			18650	1816	15735	16193	18650	18650		
TEAGAVGEAGGAEDPGAAAGGSVR	24	Unmodified	_TEAGAVGEAGGAEDPGAAAGGSVR_			0	0	0	Q8ND04	Q8ND04	Q8ND04	SMG8	Protein SMG8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.98015	2055.94574	1.9561	0.0020128	-1.9013	-0.0019564	0.05486	5.645E-05	1028.97904354492	5.9041	0.053215	5.9041	5.8775	5.9307	0	234	19	1.16792504164217	0.0119610397245404	1.16792504164217	470.924481183998	0	4.82286638770972						74	7	3	NaN	NaN	NaN	1.824E-13	1	32634	116.95	108.57	1	10671			18651	2303	15736	16194	18651	18651		
TEALSVIELLLK	12	Unmodified	_TEALSVIELLLK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.905411	1327.79627	-0.014514	-9.6506E-06	-0.82989	-0.0005518	-0.8444	-0.00056145	664.904823730466	20.031	0.017739	20.031	20.022	20.04	0	525	22	0.973257487423603	0.0141434095952221	0.973257487423603	393.871879786267	0	5.72375902147326						42	3	3	NaN	NaN	NaN	0.027908	1	13229	30.349	17.753	1	16767			18652	2013	15737	16195	18652	18652		
TEALYYTDDTAMAR	14	Unmodified	_TEALYYTDDTAMAR_			0	0	0	Q9NX46	Q9NX46	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.864145	1619.71374	2.144	0.0017385	-0.20301	-0.00016461	1.941	0.0015739	810.864640025935	8.9642	0.10642	8.9642	8.9198	9.0262	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	432.183184253745	0	7.2969054565101						227	13	3	NaN	NaN	NaN	0.00033072	1	22169	65.879	61.896	1	58295			18653	3095	15738	16196	18653	18653		
TEAPAAPAAQETK	13	Unmodified	_TEAPAAPAAQETK_			0	0	0	P80723	P80723	P80723	BASP1	Brain acid soluble protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.825149	1283.63574	2.7674	0.001779	-0.99784	-0.00064143	1.7696	0.0011375	642.824426435058	3.0932	0.14188	3.0932	2.969	3.1109	0	582	64	0.934820374997243	0.0425537884414288	0.934820374997243	378.450619294073	0	17.2273818796634						461	17	4	NaN	NaN	NaN	0.00027592	1	11867	96.946	86.244	1	231300			18654	1468	15739	16197	18654	18654		
TECNHYNNIMALYLK	15	Unmodified	_TECNHYNNIMALYLK_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	628.630806	1882.87059	-0.36635	-0.0002303	0.0036695	2.3068E-06	-0.36269	-0.000228	628.965328490984	12.387	0.079789	12.387	12.361	12.44	0	690	34	0.86171403876517	0.0223892235225879	0.86171403876517	521.502777310723	0	13.5497876599431						260	10	4	NaN	NaN	NaN	0.0013415	1	29203	42.061	38.325	1	59122			18655	1884	15740	16198	18655	18655		
TECYGYALGDATR	13	Unmodified	_TECYGYALGDATR_			0	0	0	P53041	P53041	P53041	PPP5C	Serine/threonine-protein phosphatase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.824823	1475.63509	1.7134	0.0012659	-0.23822	-0.00017601	1.4752	0.0010899	738.824802964094	7.864	0.133	7.864	7.8285	7.9615	0	462	34	1.01562323939346	0.022160929987054	1.01562323939346	410.592643184572	0	8.95914396784264						290	16	3	NaN	NaN	NaN	0.007783	1	17752	44.82	43.563	1	90180			18656	1230	15741	16199	18656	18656		
TEDGGEFEEGASENNAK	17	Unmodified	_TEDGGEFEEGASENNAK_			0	0	0	O43719	O43719	O43719	HTATSF1	HIV Tat-specific factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.366292	1782.71803	3.0714	0.0027408	-1.9685	-0.0017566	1.1029	0.00098422	892.36472335111	4.2371	0.088676	4.2371	4.2105	4.2992	0	387	40	1.06589869032374	0.0261071745349262	1.06589869032374	430.227541539275	0	10.5376107679488						253	11	4	NaN	NaN	NaN	6.3113E-14	1	26742	151.52	149.68	1	54689			18657	224	15742	16200	18657	18657		
TEDIIIK	7	Unmodified	_TEDIIIK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.244744	830.474934	-0.81423	-0.00033892	0.32618	0.00013577	-0.48805	-0.00020315	416.244821964176	6.1259	0.15959	6.1259	6.0815	6.2411	0	765	28	0.810730346695089	0.018384767783428	0.810730346695089	330.113730440233	0	7.48592217005955						216	19	3	NaN	NaN	NaN	0.0086281	1	1324	58.687	23.054	1	60859			18658	3161	15743	16201	18658	18658		
TEDIITAIR	9	Unmodified	_TEDIITAIR_			0	0	0	P32754	P32754	P32754	HPD	4-hydroxyphenylpyruvate dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.290214	1030.56587	1.1181	0.00057725	-4.0371	-0.0020843	-2.919	-0.001507	516.289608896986	9.8154	0.27485	9.8154	9.7356	10.01	0	678	40	0.869855008346864	0.0264526463218361	0.869855008346864	353.069228744713	0	10.7369795488756						393	32	4	NaN	NaN	NaN	0.0012131	1	5019	65.156	9.1418	1	175510			18659	939	15744	16202	18659	18659		
TEDLEATSEHFK	12	Unmodified	_TEDLEATSEHFK_			0	0	0	Q9BV40	Q9BV40	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.825346	1405.63614	2.2311	0.0015703	-0.62782	-0.00044188	1.6033	0.0011284	703.824818284957	5.5405	0.18623	5.5405	5.5051	5.6913	0	456	40	1.01965166402748	0.0261829569110703	1.01965166402748	412.411891392104	0	10.5900506642448						374	22	4	NaN	NaN	NaN	4.0697E-11	1	15633	136.84	110.98	1	126910			18660	2755	15745	16203	18660	18660		
TEDLEATSEHFK	12	Unmodified	_TEDLEATSEHFK_			0	0	0	Q9BV40	Q9BV40	Q9BV40	VAMP8	Vesicle-associated membrane protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.552656	1405.63614	-0.51784	-0.00024315	2.951	0.0013856	2.4331	0.0011425	469.553483211587	5.5317	0.070932	5.5317	5.5051	5.576	0	753	34	0.81889964927511	0.0224577750816375	0.81889964927511	496.819056846195	0	13.6249302888329						196	9	3	NaN	NaN	NaN	0.035787	1	15634	23.836	23.546	1	58003			18661	2755	15745	16203	18661	18661		
TEDPDLPAFYFDPLINPISHR	21	Unmodified	_TEDPDLPAFYFDPLINPISHR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	819.741018	2456.20123	0.44846	0.00036762	-0.29023	-0.00023791	0.15823	0.0001297	820.074916391224	19.002	0.097552	19.002	18.967	19.064	0	537	175	0.965173861991602	0.117229257600176	0.965173861991602	583.118422750971	0	70.8251046614818						1163	12	5	NaN	NaN	NaN	2.8445E-11	1	36599	122.13	110.92	1	309310			18662	2064	15746	16204	18662	18662		
TEDSDDIHFEPVVQMPEK	18	Unmodified	_TEDSDDIHFEPVVQMPEK_			0	0	0	P49792;A6NKT7;Q7Z3J3;Q99666;O14715;P0DJD0;P0DJD1	P49792;A6NKT7	P49792	RANBP2;RGPD3;RGPD4;RGPD5;RGPD8;RGPD1;RGPD2	E3 SUMO-protein ligase RanBP2;RanBP2-like and GRIP domain-containing protein 3;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RANBP2-like and GRIP domain-containing protein 1;RANBP2-like and GRIP domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.989493	2114.94665	0.078948	5.5737E-05	0.99901	0.00070529	1.078	0.00076103	705.990558171879	11.713	0.079781	11.713	11.687	11.766	0	606	52	0.918606045818476	0.0344817318374574	0.918606045818476	555.487395402021	0	20.8513404571312						203	10	4	NaN	NaN	NaN	0.024075	1	33534	14.949	14.869	1	35605			18663	1151;19	15747	16205	18663	18663		
TEDSEASTCVIIK	13	Unmodified	_TEDSEASTCVIIK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.847964	1451.68137	1.6667	0.0012115	-3.6121	-0.0026255	-1.9454	-0.001414	727.345184229468	6.6313	0.17735	6.6313	6.5604	6.7377	0	477	58	1.0055473068722	0.0382832693843467	1.0055473068722	406.581502717414	0	15.4794002120494						455	21	4	NaN	NaN	NaN	0.00054924	1	17021	70.389	56.591	1	85960			18664	1942	15748	16206	18664	18664		
TEDSLMPEEEFLRR	14	Unmodified	_TEDSLMPEEEFLRR_			0	0	1	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.61381	1750.8196	-0.54315	-0.00031753	-0.28858	-0.00016871	-0.83173	-0.00048624	584.614093372891	11.864	0.088684	11.864	11.828	11.917	0	654	49	0.886123392477847	0.032536775783098	0.886123392477847	536.570550054152	0	19.701856228067						326	11	4	NaN	NaN	NaN	0.00016964	1	25908	79.311	45.118	1	73814			18665	1852	15749	16207	18665	18665		
TEDTEHVIIPVCLR	14	Unmodified	_TEDTEHVIIPVCLR_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.290778	1680.85051	-0.61815	-0.00034696	-0.55828	-0.00031336	-1.1764	-0.00066032	561.290713055199	11.571	0.071067	11.571	11.545	11.616	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	518.260284243026	0	12.3365063283463						164	9	3	NaN	NaN	NaN	0.0010882	1	23939	83.438	81.727	1	40912			18666	3409	15750	16208	18666	18666		
TEEADLLQTK	10	Unmodified	_TEEADLLQTK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.295693	1146.57683	0.81561	0.0004684	-5.0922	-0.0029244	-4.2766	-0.002456	574.292827188882	6.6047	0.20396	6.6047	6.5338	6.7377	0	633	49	0.900343422309015	0.032478149233901	0.900343422309015	364.956517977465	0	13.1651011836778						452	24	4	NaN	NaN	NaN	5.0374E-05	1	7969	127.94	90.222	1	166990			18667	423	15751	16209	18667	18667		
TEEALQLYNQIIK	13	Unmodified	_TEEALQLYNQIIK_			0	0	0	O76094	O76094	O76094	SRP72	Signal recognition particle subunit SRP72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.924863	1561.83517	1.1225	0.00087775	-7.8174	-0.0061126	-6.6948	-0.0052348	781.919179054175	14.914	0.22167	14.914	14.843	15.065	0	396	37	1.05987478976334	0.0241039161855134	1.05987478976334	428.26276674428	0	9.73965031971852						271	26	3	NaN	NaN	NaN	0.0026286	1	20409	85.821	68.09	1	86450			18668	383	15752	16210	18668	18668		
TEEASSGFLPGDR	13	Unmodified	_TEEASSGFLPGDR_			0	0	0	Q8WWI1	Q8WWI1	Q8WWI1	LMO7	LIM domain only protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.317688	1364.62082	1.4982	0.0010237	0.18708	0.00012784	1.6853	0.0011516	683.318705261979	7.4294	0.12413	7.4294	7.3851	7.5092	0	534	28	0.967195187796614	0.0181944515400058	0.967195187796614	391.309684322707	0	7.36114610409084						276	15	5	NaN	NaN	NaN	8.7909E-07	1	14321	112.93	105.77	1	58195			18669	2389	15753	16211	18669	18669		
TEEIAEEEETVFPK	14	Unmodified	_TEEIAEEEETVFPK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.890883	1649.76721	3.0808	0.0025444	-0.33405	-0.00027589	2.7467	0.0022685	825.890734882881	10.853	0.39907	10.853	10.649	11.048	0	267	163	1.14597988355104	0.108080009537288	1.14597988355104	462.838203523297	0	43.6513399310393						2234	46	5	NaN	NaN	NaN	9.3325E-09	1	23020	176.45	145.02	1	848740			18670	3011	15754	16212	18670	18670		
TEELEEESFPER	12	Unmodified	_TEELEEESFPER_			0	0	0	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.833368	1493.65218	1.6991	0.0012707	0.85151	0.00063679	2.5506	0.0019075	747.833532861569	7.8374	0.2749	7.8374	7.7132	7.9881	-8.8818E-16	489	46	0.997481546940468	0.0302403378372377	0.997481546940468	403.213186168357	0	12.2240887639077						521	32	3	NaN	NaN	NaN	2.9812E-05	1	18344	87.942	77.692	1	137880			18671	3355	15755	16213	18671	18671		
TEELKPQVEEK	11	Unmodified	_TEELKPQVEEK_			0	0	1	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.901397	1328.68236	-0.43272	-0.00019209	3.5701	0.0015848	3.1374	0.0013927	443.902780748874	3.4124	0.14195	3.4124	3.3769	3.5189	0	759	25	0.814815566123307	0.0163363337922245	0.814815566123307	494.619699381804	0	9.91668893582244						206	17	3	NaN	NaN	NaN	0.0083796	1	13252	62.271	55.121	1	52685			18672	3292	15756	16214	18672	18672		
TEELMELTDEQR	12	Unmodified	_TEELMELTDEQR_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.343046	1492.67154	1.079	0.00080639	1.5893	0.0011877	2.6683	0.0019941	747.34481852844	10.055	0.079794	10.055	10.002	10.081	0	459	19	1.01763759082241	0.012085274363222	1.01763759082241	411.363366646969	0	4.88527467316698						109	10	3	NaN	NaN	NaN	0.0051401	1	18313	47.334	39.777	1	23566			18673	2572	15757	16215	18673	18673		
TEEMPNDSVLENK	13	Unmodified	_TEEMPNDSVLENK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.343046	1504.67154	2.4351	0.0018345	-0.34617	-0.00026078	2.0889	0.0015737	753.343043921794	7.3496	0.30153	7.3496	7.2255	7.527	0	435	46	1.03374239103424	0.0301819168183546	1.03374239103424	417.842860928288	0	12.1996530093571						1033	35	5	NaN	NaN	NaN	0.00010896	1	18646	88.734	78.646	1	504090			18674	1126	15758	16216	18674	18674		
TEESPASDEAGEK	13	Unmodified	_TEESPASDEAGEK_			0	0	0	P05114	P05114	P05114	HMGN1	Non-histone chromosomal protein HMG-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.288793	1348.56303	2.1484	0.0014508	-0.9477	-0.00063997	1.2007	0.00081084	675.288069525095	2.1355	0.36356	2.1355	2.1	2.4636	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	371.695776223159	0	9.02673879756748						539	42	3	NaN	NaN	NaN	6.4377E-06	1	13849	127.03	120.76	1	118400			18675	524	15759	16217	18675	18675		
TEFDQEIDMGSLNPGK	16	Unmodified	_TEFDQEIDMGSLNPGK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.906541	1779.79853	2.2513	0.0020057	0.88278	0.00078647	3.1341	0.0027922	890.906697691975	12.626	0.11526	12.626	12.564	12.68	0	324	43	1.1079963157843	0.0280322312253412	1.1079963157843	447.225012865353	0	11.3147623252913						449	14	5	NaN	NaN	NaN	0.0025234	1	26663	61.042	55.014	1	104390			18676	1223	15760	16218	18676	18676		
TEFLSFMNTELAAFTK	16	Unmodified	_TEFLSFMNTELAAFTK_			0	0	0	P31949	P31949	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.45567	1848.89679	1.6753	0.0015504	1.2769	0.0011817	2.9521	0.0027321	925.958762889853	19.986	0.13301	19.986	19.969	20.102	0	243	157	1.16194328902838	0.103548802843174	1.16194328902838	468.864321686474	0	41.7837425156171						909	16	6	NaN	NaN	NaN	0.00013672	1	28463	59.731	53.354	1	1091200			18677	935	15761	16219	18677	18677		
TEFLSFMNTELAAFTK	16	Oxidation (M)	_TEFLSFM(Oxidation (M))NTELAAFTK_	TEFLSFM(1)NTELAAFTK	TEFLSFM(92)NTELAAFTK	0	1	0	P31949	P31949	P31949	S100A11	Protein S100-A11;Protein S100-A11, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.453127	1864.8917	1.2245	0.001143	1.1029	0.0010295	2.3274	0.0021725	933.452600341817	17.415	0.26601	17.415	17.291	17.557	0	240	115	1.16393748060522	0.0758784513819251	1.16393748060522	469.639015351622	0	30.6163189923942						1216	31	4	NaN	NaN	NaN	6.5734E-08	1	28802	91.993	81.022	1	431340			18678	935	15761	16220	18678	18678	335	
TEFLSLLAK	9	Unmodified	_TEFLSLLAK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.30005	1020.58555	-0.47795	-0.00024438	-4.8634	-0.0024867	-5.3414	-0.0027311	511.296263342274	14.666	0.29264	14.666	14.533	14.826	0	672	76	0.873923798053065	0.0508987638835233	0.873923798053065	354.766449253298	0	20.6621833328804						570	34	3	NaN	NaN	NaN	0.0573	1	4758	36.211	28.207	1	202740			18679	1611	15762	16221	18679	18679		
TEFVEGEEHDHR	12	Unmodified	_TEFVEGEEHDHR_			0	0	0	Q15058	Q15058	Q15058	KIF14	Kinesin-like protein KIF14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.551538	1483.63278	-0.1188	-5.8871E-05	2.0839	0.0010327	1.9651	0.0009738	495.552467724715	2.7385	0.044329	2.7385	2.7208	2.7651	0	825	16	0.769815552739974	0.01024366127849	0.769815552739974	466.801229681075	0	6.21155764418643						49	6	3	NaN	NaN	NaN	0.055782	1	18013	16.288	10.26	1	7347.8			18680	1805	15763	16222	18680	18680		
TEFWLISAPGEK	12	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TEFWLISAPGEK_			1	0	0	P21283	P21283	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.361367	1418.70818	0.28917	0.00020541	1.083	0.00076933	1.3722	0.00097474	710.36223168098	19.233	0.15073	19.233	19.153	19.304	0	465	43	1.01360860968299	0.0282067707809603	1.01360860968299	409.930886358813	0	11.4075851735072						322	18	4	NaN	NaN	NaN	0.00030419	1	16060	94.804	71.906	1	85246			18681	790	15764	16223	18681	18681		
TEGDEEAEEEQEENLEASGDYK	22	Unmodified	_TEGDEEAEEEQEENLEASGDYK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1251.00153	2499.98851	1.9911	0.0024909	-0.97802	-0.0012235	1.0131	0.0012674	1251.50171755834	7.5536	0.10641	7.5536	7.5181	7.6245	0	126	88	1.23951419873743	0.0575465251228893	1.23951419873743	499.194322780288	0	23.1759334958331						731	13	4	NaN	NaN	NaN	2.4136E-11	1	36824	99.909	98.966	1	150980			18682	673	15765	16224	18682	18682		
TEGEHDPVTEFIAHCK	16	Unmodified	_TEGEHDPVTEFIAHCK_			0	0	0	Q8IXH7	Q8IXH7	Q8IXH7	NELFCD	Negative elongation factor C/D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.952714	1868.83631	0.21117	0.00013176	2.5524	0.0015926	2.7635	0.0017243	624.288793742444	9.5317	0.17735	9.5317	9.4253	9.6026	0	636	25	0.898312834727904	0.0162458284325523	0.898312834727904	543.681909033499	0	9.83239098294314						219	21	3	NaN	NaN	NaN	0.0082969	1	28898	31.04	25.653	1	43886			18683	2211	15766	16225	18683	18683		
TEGISTSDIITR	12	Unmodified	_TEGISTSDIITR_			0	0	0	P49585;Q9Y5K3	P49585	P49585	PCYT1A;PCYT1B	Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.838256	1291.66196	1.5087	0.00097587	-4.8657	-0.0031474	-3.3571	-0.0021715	646.835296770535	8.5914	0.15971	8.5914	8.5559	8.7156	0	534	34	0.967195187796614	0.0222345870481429	0.967195187796614	391.53128037111	0	9.00080608890801						275	19	3	NaN	NaN	NaN	0.0029062	1	12131	44.598	35.62	1	93050			18684	1135	15767	16226	18684	18684		
TEGLSVLSQAMAVIK	15	Unmodified	_TEGLSVLSQAMAVIK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.929091	1545.84363	0.75625	0.00058529	1.1984	0.0009275	1.9547	0.0015128	773.929787948788	18.204	0.12414	18.204	18.169	18.293	0	384	70	1.06790610341098	0.0461514355558554	1.06790610341098	431.547163597518	0	18.6500676852281						502	15	5	NaN	NaN	NaN	1.7186E-08	1	19928	115.04	97.306	1	146560			18685	527	15768	16227	18685	18685		
TEGLSVLSQAMAVIK	15	Unmodified	_TEGLSVLSQAMAVIK_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.929091	1545.84363	0.95028	0.00073545	7.0632	0.0054664	8.0135	0.0062019	774.436833824506	18.204	0.079789	18.204	18.169	18.248	0	333	58	1.10198982404297	0.0380201832976437	1.10198982404297	445.320573195124	0	15.3641798224356						289	10	3	NaN	NaN	NaN	0.00026189	1	19929	76.255	66.005	1	55273			18686	527	15768	16227	18686	18686		
TEGSDLCDR	9	Unmodified	_TEGSDLCDR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.719295	1051.42404	0.93755	0.00049383	0.79058	0.00041641	1.7281	0.00091024	526.719665019687	2.4813	0.2838	2.4813	2.4547	2.7385	0	711	28	0.847456455381371	0.018341368585978	0.847456455381371	343.887802707706	0	7.44271036185057						346	33	3	NaN	NaN	NaN	0.001557	1	5496	67.507	63.614	1	63409			18687	518	15769	16228	18687	18687		
TEGSLEDWDIAVQK	14	Unmodified	_TEGSLEDWDIAVQK_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.885935	1589.75732	1.5177	0.0012079	0.48113	0.00038292	1.9988	0.0015908	795.885855712561	12.644	0.14186	12.644	12.582	12.724	0	396	37	1.05987478976334	0.0241039161855134	1.05987478976334	428.196629358	0	9.73814620807156						232	17	2	NaN	NaN	NaN	4.8311E-17	1	21267	181.87	166.25	1	110640			18688	1793	15770	16229	18688	18688		
TEGYEAGLAPQR	12	Unmodified	_TEGYEAGLAPQR_			0	0	0	O75312	O75312	O75312	ZPR1	Zinc finger protein ZPR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.317491	1290.62043	1.28	0.00082728	-3.6933	-0.0023871	-2.4134	-0.0015598	646.31599377627	5.4519	0.15073	5.4519	5.3987	5.5494	0	564	58	0.946969335010767	0.0384637307955292	0.946969335010767	383.346900639088	0	15.5706752503393						312	18	3	NaN	NaN	NaN	0.039504	1	12085	34.953	27.802	1	61791			18689	317	15771	16230	18689	18689		
TEHSPFHEHVLGALCSLVTDFPQGVR	26	Unmodified	_TEHSPFHEHVLGALCSLVTDFPQGVR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	734.114529	2932.42901	-0.66536	-0.00048845	-0.40321	-0.00029601	-1.0686	-0.00078445	734.364876150793	16.714	0.15075	16.714	16.661	16.812	0	579	22	0.936845902828289	0.0141786956334647	0.936845902828289	753.980767390082	0	11.4111229840853						212	18	3	NaN	NaN	NaN	2.8282E-06	1	38124	26.55	26.294	1	47414			18690	3134	15772	16231	18690	18690		
TEIIILATR	9	Unmodified	_TEIIILATR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.318774	1028.623	-0.24405	-0.00012576	0.14178	7.3062E-05	-0.10227	-5.2703E-05	515.319039673868	11.367	0.062105	11.367	11.341	11.403	0	693	16	0.85967808974117	0.0101797454144904	0.85967808974117	348.947142778928	0	4.13200373371484						47	8	2	NaN	NaN	NaN	0.067521	1	4968	18.336	13.028	1	7382.4			18691	819	15773	16232	18691	18691		
TEIIILATR	9	Unmodified	_TEIIILATR_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.318774	1028.623	1.0318	0.00053169	-0.52452	-0.00027029	0.50725	0.0002614	515.318513817427	11.358	0.28387	11.358	11.305	11.589	0	618	49	0.910492137470517	0.0324736460639303	0.910492137470517	369.572792985231	0	13.1811968279069						670	33	4	NaN	NaN	NaN	6.9704E-06	1	4969	129.72	97.594	1	276950			18692	819	15773	16232	18692	18692		
TEILPPFFK	9	Unmodified	_TEILPPFFK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.310418	1090.60628	0.13789	7.5333E-05	-2.6577	-0.0014519	-2.5198	-0.0013766	546.308917771568	15.491	0.20412	15.491	15.429	15.633	0	696	64	0.857641857947968	0.042749015256945	0.857641857947968	347.859254285427	0	17.338986467262						893	24	4	NaN	NaN	NaN	0.00064138	1	6483	82.716	26.702	1	560900			18693	343	15774	16233	18693	18693		
TEIMSPLYQDEAPK	14	Unmodified	_TEIMSPLYQDEAPK_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.392538	1620.77052	2.751	0.0022321	-1.4954	-0.0012134	1.2555	0.0010187	811.391793269568	10.489	0.30152	10.489	10.418	10.72	0	375	67	1.07392668217569	0.0441418061046637	1.07392668217569	433.801989567096	0	17.8306430309509						947	35	5	NaN	NaN	NaN	9.0029E-06	1	22215	121.96	108.79	1	255480			18694	2220	15775	16234	18694	18694		
TEISEMNR	8	Unmodified	_TEISEMNR_			0	0	0	P05787;CON__P05787;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.229299	978.444045	1.0949	0.00053675	1.7336	0.00084984	2.8285	0.0013866	490.230550294522	3.5544	0.36352	3.5544	3.4834	3.847	4.4409E-16	732	76	0.833184998970724	0.050962440106728	0.833184998970724	338.422397634467	0	20.6998820088309						995	42	4	NaN	NaN	NaN	0.0035605	1	3802	78.178	61.631	1	649920		+	18695	28	15776	16235	18695	18695		
TEIVFTGEK	9	Unmodified	_TEIVFTGEK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.27149	1022.52843	0.27509	0.00014092	-5.81	-0.0029763	-5.535	-0.0028354	512.27090821996	6.8974	0.21277	6.8974	6.7644	6.9771	0	717	52	0.84338031290707	0.0346400029303776	0.84338031290707	342.358771880452	0	14.0616382427771						506	25	3	NaN	NaN	NaN	0.032272	1	4797	56.378	22.565	1	164370			18696	1498	15777	16236	18696	18696		
TELAEPIAIRPTSETVMYPAYAK	23	Unmodified	_TELAEPIAIRPTSETVMYPAYAK_			0	0	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.108602	2550.30398	1.3797	0.0011743	0.24932	0.0002122	1.629	0.0013865	851.443260492413	13.15	0.15077	13.15	13.096	13.247	0	459	154	1.01763759082241	0.102774827581448	1.01763759082241	614.687236260194	0	62.0794429106177						1752	18	6	NaN	NaN	NaN	4.6426E-13	1	37033	112.67	100.49	1	576810			18697	565	15778	16237	18697	18697		
TELAEPIAIRPTSETVMYPAYAK	23	Oxidation (M)	_TELAEPIAIRPTSETVM(Oxidation (M))YPAYAK_	TELAEPIAIRPTSETVM(1)YPAYAK	TELAEPIAIRPTSETVM(56)YPAYAK	0	1	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.44024	2566.29889	0.89705	0.00076827	0.83995	0.00071937	1.737	0.0014876	856.775513113741	12.024	0.070951	12.024	11.988	12.059	0	483	97	1.00151498427745	0.0645350759866551	1.00151498427745	604.92820397428	0	38.9800334721061						629	9	4	NaN	NaN	NaN	0.00010353	1	37095	56.473	53.568	1	132170			18698	565	15778	16238	18698	18698	144	
TELDAHFENLLAR	13	Unmodified	_TELDAHFENLLAR_			0	0	0	Q9NR46	Q9NR46	Q9NR46	SH3GLB2	Endophilin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.263329	1527.76816	-0.6465	-0.00032988	-0.89457	-0.00045647	-1.5411	-0.00078635	510.262899124312	12.724	0.11532	12.724	12.68	12.795	0	735	46	0.831145085810763	0.0305944526295086	0.831145085810763	503.855892711537	0	18.5469366357676						284	14	3	NaN	NaN	NaN	0.0037971	1	19353	23.804	21.325	1	63492			18699	3014	15779	16239	18699	18699		
TELDSFLIEITANILK	16	Unmodified	_TELDSFLIEITANILK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.506217	1818.99788	0.20594	0.00018751	0.69056	0.00062876	0.8965	0.00081627	910.506285547537	20.261	0.017747	20.261	20.261	20.279	0	252	16	1.15595906938629	0.00997644214791249	1.15595906938629	466.506675284111	0	4.02616059758742						23	3	2	NaN	NaN	NaN	0.0073924	1	27706	24.744	22.76	1	5533.2			18700	1205	15780	16240	18700	18700		
TELEDTLDSTAAQQELR	17	Unmodified	_TELEDTLDSTAAQQELR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.463266	1918.91198	2.4763	0.0023784	-0.23886	-0.00022942	2.2374	0.002149	960.463214923256	11.403	0.1508	11.403	11.341	11.491	0	264	76	1.14797626962532	0.0499302854607733	1.14797626962532	463.102510123323	0	20.1422635117754						970	18	5	NaN	NaN	NaN	1.2971E-25	1	30030	200.9	189.42	1	539260			18701	972	15781	16241	18701	18701		
TELFIAAEGIHTGQFVYCGK	20	Unmodified	_TELFIAAEGIHTGQFVYCGK_			0	0	0	P62917	P62917	P62917	RPL8	60S ribosomal protein L8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	747.70514	2240.09359	1.3549	0.0010131	-1.5475	-0.0011571	-0.19262	-0.00014402	748.370224249229	14.267	0.21279	14.267	14.223	14.435	1.7764E-15	441	70	1.02971785871157	0.0463173150504996	1.02971785871157	622.450694749408	0	27.9981984270764						537	25	5	NaN	NaN	NaN	0.00036046	1	35100	77.696	76.602	1	149470			18702	1416	15782	16242	18702	18702		
TELGLDLGLEPK	12	Unmodified	_TELGLDLGLEPK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.855918	1283.69728	1.0065	0.00064703	2.5911	0.0016657	3.5976	0.0023128	642.857230779839	14.019	0.12414	14.019	13.939	14.063	0	501	67	0.98941132619024	0.0443801033988019	0.98941132619024	400.550879860216	0	17.9667333434785						511	15	3	NaN	NaN	NaN	0.00033677	1	11880	77.358	58.035	1	117460			18703	2165	15783	16243	18703	18703		
TELISVSEVHPSR	13	Unmodified	_TELISVSEVHPSR_			0	0	0	P42224	P42224	P42224	STAT1	Signal transducer and activator of transcription 1-alpha/beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.385905	1452.75726	2.7481	0.0019989	0.50295	0.00036584	3.251	0.0023647	727.38620391161	7.7398	0.11547	7.7398	7.6865	7.802	0	393	34	1.0618830335572	0.0220937320698047	1.0618830335572	429.357188276276	0	8.93328396842657						244	14	3	NaN	NaN	NaN	0.00044548	1	17054	99.174	60.164	1	55214			18704	1044	15784	16244	18704	18704		
TELLNVCMNAK	11	Unmodified	_TELLNVCMNAK_			0	0	0	P15328	P15328	P15328	FOLR1	Folate receptor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.820498	1291.62644	1.7217	0.0011136	4.0307	0.0026071	5.7524	0.0037207	647.325079586905	9.975	0.27486	9.975	9.9218	10.197	0	510	67	0.983355730988811	0.0444353690970316	0.983355730988811	398.073324800754	0	17.9879310790383						930	32	5	NaN	NaN	NaN	0.00052718	1	12123	100.84	88.769	1	337580			18705	711	15785	16245	18705	18705		
TELLQRPGIEDVAVLK	16	Unmodified	_TELLQRPGIEDVAVLK_			0	0	1	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.343759	1780.00945	-0.80597	-0.00047902	-0.56437	-0.00033543	-1.3703	-0.00081445	594.343269700991	12.325	0.09752	12.325	12.281	12.378	0	711	31	0.847456455381371	0.0203750522723063	0.847456455381371	513.090683136995	0	12.3360314538461						196	12	3	NaN	NaN	NaN	0.0016669	1	26685	56.938	38.126	1	49574			18706	1810	15786	16246	18706	18706		
TELNSSAESEQPLDK	15	Unmodified	_TELNSSAESEQPLDK_			0	0	0	Q9Y5B6	Q9Y5B6	Q9Y5B6	PAXBP1	PAX3- and PAX7-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.389039	1646.76352	2.0218	0.0016667	-1.8229	-0.0015027	0.19893	0.00016399	824.387912724467	5.3987	0.070912	5.3987	5.3721	5.443	0	402	31	1.05585747106793	0.020089366798685	1.05585747106793	426.446058599356	0	8.11381415182007						176	9	4	NaN	NaN	NaN	1.1419E-07	1	22937	137.39	102.44	1	34024			18707	3428	15787	16247	18707	18707		
TELPQFVSYFQQR	13	Unmodified	_TELPQFVSYFQQR_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.91483	1641.81511	1.3937	0.0011455	-0.15673	-0.00012882	1.237	0.0010167	821.914142714907	16.014	0.1862	16.014	15.908	16.094	0	360	37	1.08395544855938	0.0240607506716419	1.08395544855938	437.80544103401	0	9.71804475304538						429	22	4	NaN	NaN	NaN	0.00039748	1	22808	65.879	63	1	114730			18708	1733	15788	16248	18708	18708		
TELQGLIGQLDEVSLEK	17	Unmodified	_TELQGLIGQLDEVSLEK_			0	0	0	Q9UL15	Q9UL15	Q9UL15	BAG5	BAG family molecular chaperone regulator 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.501663	1870.98877	0.75964	0.00071141	0.42991	0.00040261	1.1896	0.001114	937.003283392705	18.062	0.088676	18.062	18.027	18.115	0	237	31	1.16593139812432	0.0199378074440928	1.16593139812432	470.432226853545	0	8.04454461865487						182	11	4	NaN	NaN	NaN	0.00021602	1	28967	79.235	75.499	1	35764			18709	3272	15789	16249	18709	18709		
TELQNTLR	8	Unmodified	_TELQNTLR_			0	0	0	P22059	P22059	P22059	OSBP	Oxysterol-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.766906	973.519259	0.60831	0.00029671	-3.1384	-0.0015308	-2.5301	-0.0012341	487.765203836727	4.7603	0.097538	4.7603	4.7159	4.8135	0	711	28	0.847456455381371	0.0183388204791043	0.847456455381371	344.243323848695	0	7.44936979015682						144	12	2	NaN	NaN	NaN	0.015747	1	3713	67.903	31.333	1	52171			18710	798	15790	16250	18710	18710		
TELSQSDMFDQR	12	Unmodified	_TELSQSDMFDQR_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.82228	1455.63001	1.7878	0.001303	-0.55184	-0.00040219	1.236	0.00090082	728.822178695278	8.4318	0.18623	8.4318	8.3785	8.5648	0	459	46	1.01763759082241	0.030215279505817	1.01763759082241	411.459521367963	0	12.2168879722844						720	22	5	NaN	NaN	NaN	9.6115E-17	1	17109	203.8	189.8	1	422490			18711	1392	15791	16251	18711	18711		
TEMDWVLK	8	Unmodified	_TEMDWVLK_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.254785	1020.49502	-0.93873	-0.00047993	-0.63512	-0.00032471	-1.5739	-0.00080464	511.254699912266	11.944	0.19508	11.944	11.882	12.077	0	696	49	0.857641857947968	0.032586506939132	0.857641857947968	348.157241331214	0	13.2283986088246						628	23	5	NaN	NaN	NaN	0.0028727	1	4743	79.809	46.414	1	463710			18712	1217	15792	16252	18712	18712		
TEMEDLMSSK	10	Unmodified	_TEMEDLMSSK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.754489	1169.49443	1.4956	0.00087606	0.033161	1.9424E-05	1.5288	0.00089549	585.754942294978	8.0858	0.22181	8.0858	8.0059	8.2277	0	588	58	0.93076847747433	0.0385063777351686	0.93076847747433	377.201496540309	0	15.6050227952123						621	26	4	NaN	NaN	NaN	0.0024598	1	8592	90.263	66.687	1	229210			18713	972	15793	16253	18713	18713		
TEMENEFVLIK	11	Unmodified	_TEMENEFVLIK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000016045	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.841953	1351.66935	1.1974	0.00081046	0.85701	0.00058006	2.0544	0.0013905	676.842765581632	13.061	0.34575	13.061	12.99	13.336	0	495	70	0.993446994398923	0.0464005903678208	0.993446994398923	401.969307038915	0	18.7746435003656						854	40	3	NaN	NaN	NaN	3.3366E-05	1	13933	124.81	103.53	1	1020600		+	18714	28	15794	16254	18714	18714		
TEMSEVLTEILR	12	Unmodified	_TEMSEVLTEILR_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.871242	1419.72793	0.72856	0.00051791	-2.1183	-0.0015059	-1.3898	-0.00098794	710.870116267189	18.718	0.16846	18.718	18.674	18.843	0	489	61	0.997481546940468	0.0403343924406536	0.997481546940468	403.40587862648	0	16.3122125630242						536	20	4	NaN	NaN	NaN	1.4278E-11	1	16090	141.29	118.24	1	218320			18715	211	15795	16255	18715	18715		
TEMVTISDASQR	12	Unmodified	_TEMVTISDASQR_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.321916	1336.62928	1.4845	0.00099363	0.40936	0.000274	1.8939	0.0012676	669.322504934044	6.6047	0.16849	6.6047	6.5249	6.6934	0	510	46	0.983355730988811	0.0302779838228682	0.983355730988811	397.931488857661	0	12.2524970390183						250	20	2	NaN	NaN	NaN	1.7058E-08	1	13488	140.05	109.13	1	141250			18716	206	15796	16256	18716	18716		
TENLVDSSVTFK	12	Unmodified	_TENLVDSSVTFK_			0	0	0	P51809	P51809	P51809	VAMP7	Vesicle-associated membrane protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.340632	1338.66671	1.8985	0.0012726	-0.43759	-0.00029333	1.4609	0.0009793	670.339903227733	9.78	0.25715	9.78	9.6736	9.9307	0	513	52	0.981336640919867	0.0343150509571248	0.981336640919867	397.108248251825	0	13.8859482119028						635	30	5	NaN	NaN	NaN	0.00053356	1	13555	69.276	41.687	1	151810			18717	1199	15797	16257	18717	18717		
TENNDHINLK	10	Unmodified	_TENNDHINLK_			0	0	0	P61956	P61956	P61956	SUMO2	Small ubiquitin-related modifier 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.296559	1196.57856	1.3863	0.00083081	-1.4789	-0.0008863	-0.092584	-5.5485E-05	599.296320894596	2.774	0.25715	2.774	2.7474	3.0045	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.013952584517	0	9.05718148624936						343	30	3	NaN	NaN	NaN	1.1168E-07	1	9342	162.8	126.23	1	89879			18718	1354	15798	16258	18718	18718		
TENPLILIDEVDK	13	Unmodified	_TENPLILIDEVDK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.903596	1497.79264	0.86369	0.00064768	0.16504	0.00012377	1.0287	0.00077145	750.405458997814	16.608	0.31035	16.608	16.44	16.75	0	432	49	1.035754240522	0.0321784950713864	1.035754240522	418.673581126479	0	13.007222408289						836	36	4	NaN	NaN	NaN	3.048E-05	1	18475	108.24	96.225	1	270910			18719	990	15799	16259	18719	18719		
TENVFVDEPLIHATTYIPLMDNADSSPVVDK	31	Unmodified	_TENVFVDEPLIHATTYIPLMDNADSSPVVDK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1144.22894	3429.665	0.93503	0.0010699	0.14258	0.00016314	1.0776	0.001233	1144.5634456401	18.781	0.062067	18.781	18.745	18.807	0	249	34	1.15795408347545	0.0219511929599736	1.15795408347545	698.47018187652	0	13.2408132221803						137	8	3	NaN	NaN	NaN	0.029373	1	38622	12.657	12.476	1	26303			18720	2167	15800	16260	18720	18720		
TEPATGFIDGDLIESFLDISRPK	23	Unmodified	_TEPATGFIDGDLIESFLDISRPK_			0	0	1	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.098871	2520.27478	1.0634	0.00089443	-0.96085	-0.00080817	0.10256	8.6262E-05	841.432100568003	20.04	0.03547	20.04	20.031	20.066	0	399	52	1.0578662689527	0.0341684265404665	1.0578662689527	639.027972742988	0	20.6402084883457						160	5	4	NaN	NaN	NaN	0.059258	1	36922	9.8729	9.1206	1	62787			18721	1884	15801	16261	18721	18721		
TEPELLVAHAYTR	13	Unmodified	_TEPELLVAHAYTR_			0	0	0	P09601	P09601	P09601	HMOX1	Heme oxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.599941	1498.77799	-0.036991	-1.8517E-05	1.7662	0.00088418	1.7292	0.00086566	500.600813682504	8.8665	0.11539	8.8665	8.8221	8.9375	0	678	25	0.869855008346864	0.0162774195650359	0.869855008346864	527.414026165137	0	9.86939122726915						173	14	2	NaN	NaN	NaN	0.032097	1	18500	22.142	19.471	1	55324			18722	606	15802	16262	18722	18722		
TEPTAQQNLALQLAEK	16	Unmodified	_TEPTAQQNLALQLAEK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.96779	1753.92103	2.9707	0.0026081	-0.78513	-0.00068932	2.1855	0.0019188	878.468776649337	10.746	0.18622	10.746	10.684	10.871	0	309	73	1.11800162319566	0.0479957663241226	1.11800162319566	451.314966959438	0	19.3749340281356						894	22	4	NaN	NaN	NaN	1.2901E-06	1	26016	110.91	96.543	1	336200			18723	21	15803	16263	18723	18723		
TEQCLVALLHK	11	Unmodified	_TEQCLVALLHK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.907829	1310.70166	-2.4854	-0.0010884	-0.36575	-0.00016017	-2.8511	-0.0012485	437.907651119799	10.064	0.11528	10.064	10.028	10.143	0	840	25	0.759569036796863	0.0164001382999108	0.759569036796863	461.148271588793	0	9.95682428382565						197	14	3	NaN	NaN	NaN	0.034916	1	12687	36.24	32.632	1	55798			18724	3238	15804	16264	18724	18724		
TEQDLALGTDAEGQK	15	Unmodified	_TEQDLALGTDAEGQK_			0	0	0	O00186	O00186	O00186	STXBP3	Syntaxin-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.378474	1574.74239	2.1663	0.0017079	-5.2635	-0.0041496	-3.0972	-0.0024417	788.374675327574	6.2855	0.13303	6.2855	6.2323	6.3653	0	420	43	1.04379886199097	0.0281484102411274	1.04379886199097	421.736589809214	0	11.3730863061111						355	16	4	NaN	NaN	NaN	3.5613E-08	1	20813	115.35	102.07	1	83036			18725	59	15805	16265	18725	18725		
TEQEEDEELLTESSK	15	Unmodified	_TEQEEDEELLTESSK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.894351	1765.77415	3.0656	0.0027097	0.89552	0.00079155	3.9611	0.0035012	884.397040572061	7.5092	0.26599	7.5092	7.3674	7.6334	0	345	46	1.09397730668811	0.0300614391365961	1.09397730668811	441.593574068282	0	12.1345646466415						800	31	4	NaN	NaN	NaN	1.8335E-06	1	26286	90.376	81.569	1	216860			18726	251	15806	16266	18726	18726		
TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR	31	Unmodified	_TEQGGAHFSVSSLAEGSVTSVGSVNPAENFR_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1041.16555	3120.47483	1.4911	0.0015525	0.1755	0.00018272	1.6666	0.0017352	1041.50049361991	14.471	0.053187	14.471	14.444	14.498	0	396	43	1.05987478976334	0.028121237288756	1.05987478976334	639.565488685575	0	16.9693373620503						162	7	4	NaN	NaN	NaN	0.010344	1	38384	16.378	15.999	1	31414			18727	674	15807	16267	18727	18727		
TEQQESDSVQCMPVAK	16	Unmodified	_TEQQESDSVQCMPVAK_			0	0	0	Q96RE7	Q96RE7	Q96RE7	NACC1	Nucleus accumbens-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.908758	1835.80296	3.296	0.0030287	-4.1441	-0.0038081	-0.84812	-0.00077934	918.904654455916	5.6913	0.29264	5.6913	5.4608	5.7534	0	291	67	1.12999890578964	0.0439961143381138	1.12999890578964	455.998443050127	0	17.7541407656637						376	34	4	NaN	NaN	NaN	6.4904E-09	1	28118	121.86	83.025	1	71086			18728	2609	15808	16268	18728	18728		
TEQQTADQLLAR	12	Unmodified	_TEQQTADQLLAR_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.354605	1372.69466	1.7192	0.0011817	-0.9248	-0.00063567	0.79445	0.00054607	687.354727241274	7.2255	0.17735	7.2255	7.1634	7.3408	8.8818E-16	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.090711953522	0	9.79597419265923						367	21	4	NaN	NaN	NaN	0.039504	1	14573	28.647	26.676	1	212720			18729	639	15809	16269	18729	18729		
TESAVSQMQSVIELGR	16	Unmodified	_TESAVSQMQSVIELGR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.938176	1733.8618	2.3647	0.0020524	-0.36785	-0.00031927	1.9969	0.0017332	867.938175723006	14.613	0.19507	14.613	14.551	14.746	0	342	64	1.09598084995137	0.0420512546798575	1.09598084995137	442.465757634422	0	16.9767932188111						587	23	4	NaN	NaN	NaN	1.8922E-17	1	25442	149.02	131.29	1	182890			18730	1036	15810	16270	18730	18730		
TESNQEVANPEHYIK	15	Unmodified	_TESNQEVANPEHYIK_			0	0	0	P06730	P06730	P06730	EIF4E	Eukaryotic translation initiation factor 4E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.918298	1757.82204	3.0418	0.0026765	-1.4741	-0.0012971	1.5677	0.0013794	879.917153321232	6.6845	0.27489	6.6845	6.5604	6.8353	0	312	40	1.11600111266355	0.0260102225300953	1.11600111266355	450.499562294308	0	10.4996256115008						749	32	4	NaN	NaN	NaN	3.6895E-08	1	26084	98.865	89.123	1	220660			18731	543	15811	16271	18731	18731		
TESNQEVANPEHYIK	15	Unmodified	_TESNQEVANPEHYIK_			0	0	0	P06730	P06730	P06730	EIF4E	Eukaryotic translation initiation factor 4E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	586.947957	1757.82204	1.1013	0.00064638	0.44088	0.00025877	1.5421	0.00090516	587.283148697592	6.6934	0.26602	6.6934	6.5693	6.8353	0	636	31	0.898312834727904	0.0203072864196308	0.898312834727904	543.934564034456	0	12.2962007870346						519	31	5	NaN	NaN	NaN	0.0087548	1	26085	58.476	52.448	1	184060			18732	543	15811	16271	18732	18732		
TETMNVVMETNK	12	Unmodified	_TETMNVVMETNK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.825977	1395.6374	1.2314	0.00086055	3.6145	0.0025259	4.8459	0.0033864	698.829336815199	7.1014	0.1596	7.1014	7.0747	7.2343	0	501	34	0.98941132619024	0.0222007820488888	0.98941132619024	400.208691484808	0	8.98003256940359						207	19	2	NaN	NaN	NaN	0.00065044	1	15304	96.946	88.472	1	89171			18733	667	15812	16272	18733	18733		
TETVEEPMEEEEAAK	15	Unmodified	_TETVEEPMEEEEAAK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.37474	1720.73493	3.2166	0.0027707	-2.1903	-0.0018867	1.0263	0.00088401	861.373201219085	6.2678	0.44339	6.2678	6.1791	6.6225	0	372	97	1.07593298845566	0.0641886048054721	1.07593298845566	434.398389386151	0	25.9155791704682						2418	51	6	NaN	NaN	NaN	1.5435E-33	1	25074	220.81	215.42	1	1581200			18734	700	15813	16273	18734	18734		
TETVEEPMEEEEAAK	15	Oxidation (M)	_TETVEEPM(Oxidation (M))EEEEAAK_	TETVEEPM(1)EEEEAAK	TETVEEPM(160)EEEEAAK	0	1	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.372197	1736.72984	3.346	0.0029089	-1.9747	-0.0017167	1.3713	0.0011922	869.370656635759	4.5563	0.18621	4.5563	4.5031	4.6893	0	393	103	1.0618830335572	0.0681910031881943	1.0618830335572	428.694290361309	0	27.5294856372842						929	22	4	NaN	NaN	NaN	2.041E-16	1	25503	160.62	148.6	1	272080			18735	700	15813	16274	18735	18735	231	
TEVIPPLIENR	11	Unmodified	_TEVIPPLIENR_			0	0	0	P04114	P04114	P04114	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.864077	1279.7136	0.056533	3.623E-05	1.1203	0.00071796	1.1768	0.00075419	640.864529146539	11.917	0.15074	11.917	11.837	11.988	0	555	28	0.953040030838688	0.0182095678399629	0.953040030838688	385.839204081501	0	7.37216164556742						302	18	4	NaN	NaN	NaN	0.0040343	1	11758	61.48	52.503	1	76056			18736	507	15814	16275	18736	18736		
TEVIQLEDTLAQVR	14	Unmodified	_TEVIQLEDTLAQVR_			0	0	0	O75150;Q5VTR2	O75150;Q5VTR2	Q5VTR2	RNF40;RNF20	E3 ubiquitin-protein ligase BRE1B;E3 ubiquitin-protein ligase BRE1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.938502	1613.86245	1.9071	0.0015408	-1.1862	-0.00095836	0.72088	0.00058243	807.93861311383	14.71	0.12416	14.71	14.657	14.781	-1.7764E-15	345	37	1.09397730668811	0.024044179420704	1.09397730668811	441.917267591598	0	9.71275912774388						200	15	2	NaN	NaN	NaN	8.6074E-06	1	22018	78.043	62.163	1	71867			18737	2009;305	15815	16276	18737	18737		
TEVSLTLTNK	10	Unmodified	_TEVSLTLTNK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.308603	1104.60265	1.5274	0.00084513	-0.24911	-0.00013784	1.2783	0.00070729	553.308319746836	7.7309	0.22179	7.7309	7.6865	7.9083	0	642	40	0.894250814548268	0.026401305375596	0.894250814548268	362.650480948416	0	10.7066674543231						275	26	2	NaN	NaN	NaN	0.0062512	1	6846	65.404	50.641	1	95197			18738	1095	15816	16277	18738	18738		
TEVTGDHIPTPQDLPQR	17	Unmodified	_TEVTGDHIPTPQDLPQR_			0	0	0	P56211	P56211	P56211	ARPP19	cAMP-regulated phosphoprotein 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.321795	1902.94355	0.67371	0.00042802	0.42465	0.00026979	1.0984	0.00069781	635.656322725753	8.6534	0.22178	8.6534	8.4938	8.7156	0	645	25	0.892219381832517	0.0162503358179286	0.892219381832517	539.922757905938	0	9.83382149095769						183	26	2	NaN	NaN	NaN	0.0062809	1	29663	54.309	54.099	1	55723			18739	1285	15817	16278	18739	18739		
TEWETAAPAVAETPDIK	17	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TEWETAAPAVAETPDIK_			1	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.957088	1869.89962	0.72771	0.0006811	2.2624	0.0021175	2.9901	0.0027986	936.460452662244	14.808	0.24831	14.808	14.737	14.985	0	96	208	1.2593374219024	0.137166041864176	1.2593374219024	508.122039115019	0	55.3442529993862						3295	29	6	NaN	NaN	NaN	5.0825E-19	1	28930	171.2	154.44	1	2998300			18740	1090	15818	16279	18740	18740		
TEWLDGK	7	Unmodified	_TEWLDGK_			0	0	0	P62937;F5H284;Q9Y536;P0DN26;A0A0B4J2A2;A0A075B767;A0A075B759;P0DN37	P62937	P62937	PPIA;PPIAL4D;PPIAL4A;PPIAL4C;PPIAL4E	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	424.711068	847.407583	-0.36545	-0.00015521	-0.53122	-0.00022562	-0.89667	-0.00038083	424.710971919816	6.117	0.31926	6.117	6.0372	6.3565	0	840	73	0.759569036796863	0.0491661822907883	0.759569036796863	309.181466629091	0	20.0130226652255						955	37	4	NaN	NaN	NaN	0.0068453	1	1517	73.637	12.143	1	789140			18741	1417	15819	16280	18741	18741		
TEYEEAQDAIVK	12	Unmodified	_TEYEEAQDAIVK_			0	0	0	P43246	P43246	P43246	MSH2	DNA mismatch repair protein Msh2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.335546	1394.65654	1.7245	0.0012043	0.73806	0.00051542	2.4626	0.0017197	698.336245195036	6.9683	0.15963	6.9683	6.853	7.0126	0	486	49	0.999498404980629	0.0322808922550346	0.999498404980629	404.291632253164	0	13.0574441693375						349	19	5	NaN	NaN	NaN	0.0061953	1	15280	66.664	15.133	1	175330			18742	1063	15820	16281	18742	18742		
TFAAQSLVQLLSK	13	Unmodified	_TFAAQSLVQLLSK_			0	0	0	P42695	P42695	P42695	NCAPD3	Condensin-2 complex subunit D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.406109	1404.79767	1.037	0.0007294	-1.7136	-0.0012053	-0.67662	-0.00047594	703.404962924619	17.779	0.079795	17.779	17.743	17.823	0	438	28	1.03173026378327	0.0181116473716121	1.03173026378327	417.299675175311	0	7.32554314860266						139	10	3	NaN	NaN	NaN	0.00057807	1	15620	71.219	62.242	1	34524			18743	1053	15821	16282	18743	18743		
TFAEVTDLDNEVNNMLK	17	Unmodified	_TFAEVTDLDNEVNNMLK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.96713	1951.91971	1.4755	0.0014415	0.01327	1.2964E-05	1.4887	0.0014544	977.468638638368	17.566	0.1685	17.566	17.477	17.646	0	231	85	1.16991841121525	0.0557645800962567	1.16991841121525	471.896837046835	0	22.4931317555159						994	20	5	NaN	NaN	NaN	6.1555E-10	1	30745	98.167	35.713	1	214310			18744	639	15822	16283	18744	18744		
TFAPEEISAMVLTK	14	Unmodified	_TFAPEEISAMVLTK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.902542	1535.79053	1.9886	0.001529	-1.1966	-0.00092003	0.79206	0.00060902	768.901839183234	16.129	0.50544	16.129	15.978	16.484	0	429	160	1.03776581230406	0.106334587506747	1.03776581230406	419.391669540593	0	42.9729324820909						3462	58	6	NaN	NaN	NaN	3.4085E-08	1	19607	165.09	151.92	1	1544200			18745	638	15823	16284	18745	18745		
TFAPEEISAMVLTK	14	Oxidation (M)	_TFAPEEISAM(Oxidation (M))VLTK_	TFAPEEISAM(1)VLTK	TFAPEEISAM(75)VLTK	0	1	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.899999	1551.78545	2.3152	0.0017987	0.54498	0.0004234	2.8602	0.0022221	777.402153813623	13.513	0.28375	13.513	13.416	13.7	0	408	64	1.0518390438467	0.0421905974214265	1.0518390438467	425.03992496683	0	17.0488901959056						1092	33	5	NaN	NaN	NaN	0.016706	1	20121	74.524	61.25	1	533220			18746	638	15823	16285	18746	18746	187	
TFAVDETSVSGYIYHK	16	Unmodified	_TFAVDETSVSGYIYHK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.296586	1815.86793	0.32669	0.00019807	2.119	0.0012847	2.4457	0.0014828	606.298101524389	11.66	0.18619	11.66	11.589	11.775	0	576	64	0.938871150116794	0.0425537884414288	0.938871150116794	568.350823462618	0	25.7601702844224						453	22	4	NaN	NaN	NaN	0.00074679	1	27625	76.255	70.227	1	145530			18747	2442	15824	16286	18747	18747		
TFAVDETSVSGYIYHK	16	Unmodified	_TFAVDETSVSGYIYHK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.941241	1815.86793	1.4118	0.0012833	1.6969	0.0015424	3.1087	0.0028256	908.94285333794	11.651	0.13294	11.651	11.616	11.749	0	246	70	1.1599488233373	0.0459169083638418	1.1599488233373	468.122909273219	0	18.5307802341405						524	16	4	NaN	NaN	NaN	1.5646E-12	1	27626	130.71	120.97	1	120960			18748	2442	15824	16286	18748	18748		
TFAYTNHTVLPEALER	16	Unmodified	_TFAYTNHTVLPEALER_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	621.319614	1860.93701	0.55923	0.00034746	0.028017	1.7408E-05	0.58725	0.00036487	621.653994076897	11.066	0.11526	11.066	11.03	11.146	0	675	64	0.871889544407995	0.0426837906416542	0.871889544407995	527.706354346963	0	25.8341296712191						344	14	3	NaN	NaN	NaN	0.020184	1	28721	40.83	35.736	1	72412			18749	545	15825	16287	18749	18749		
TFCQLILDPIFK	12	Unmodified	_TFCQLILDPIFK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.904888	1493.79522	1.3194	0.00098679	1.473	0.0011017	2.7924	0.0020885	747.906265099448	18.639	0.5054	18.639	18.577	19.082	0	429	112	1.03776581230406	0.0744385523392557	1.03776581230406	419.496972882696	0	30.0903604665467						2188	58	6	NaN	NaN	NaN	2.8402E-11	1	18358	138.71	119.39	1	4599400			18750	679	15826	16288	18750	18750		
TFDAQIVIIEHK	12	Unmodified	_TFDAQIVIIEHK_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.929398	1412.76637	-0.65236	-0.00030787	-0.8148	-0.00038453	-1.4672	-0.0006924	471.92900307681	10.844	0.31926	10.844	10.764	11.083	0	768	37	0.808687310729125	0.0245147306165753	0.808687310729125	490.599250529268	0	14.8721369902232						646	37	4	NaN	NaN	NaN	0.0033414	1	15861	56.202	52.594	1	274900			18751	709	15827	16289	18751	18751		
TFDAQIVIIEHK	12	Unmodified	_TFDAQIVIIEHK_			0	0	0	P15170	P15170	P15170	GSPT1	Eukaryotic peptide chain release factor GTP-binding subunit ERF3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.390459	1412.76637	2.1393	0.0015133	0.034475	2.4387E-05	2.1737	0.0015377	707.390360568993	10.853	0.15074	10.853	10.8	10.95	0	405	25	1.05384839605172	0.0160759277723759	1.05384839605172	426.222260171688	0	6.5018064222233						225	18	3	NaN	NaN	NaN	3.7042E-07	1	15862	139.78	126.5	1	48232			18752	709	15827	16289	18752	18752		
TFDECVAEGGSDCAPEK	17	Unmodified	_TFDECVAEGGSDCAPEK_			0	0	0	Q7LGA3	Q7LGA3	Q7LGA3	HS2ST1	Heparan sulfate 2-O-sulfotransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.374748	1870.73494	2.67	0.0025001	-1.4544	-0.0013618	1.2157	0.0011383	936.8746815641	6.1791	0.062076	6.1791	6.1525	6.2146	0	327	31	1.10599442759226	0.020020262712183	1.10599442759226	446.249195376261	0	8.07782200673688						142	8	3	NaN	NaN	NaN	1.3607E-07	1	28946	105.78	103.64	1	25265			18753	2124	15828	16290	18753	18753		
TFDEFQELHNK	11	Unmodified	_TFDEFQELHNK_			0	0	0	O00443	O00443	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.330598	1406.64664	2.5048	0.0017642	4.3403	0.003057	6.8451	0.0048212	704.333161514514	7.7487	0.10645	7.7487	7.7044	7.8108	0	453	28	1.02166545906632	0.0181216541002778	1.02166545906632	413.223485944292	0	7.32949617895162						183	13	3	NaN	NaN	NaN	0.037862	1	15665	53.517	23.762	1	44857			18754	80	15829	16291	18754	18754		
TFDEIASGFR	10	Unmodified	_TFDEIASGFR_			0	0	0	P11166	P11166	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.77747	1141.54039	0.62138	0.00035529	-0.61282	-0.0003504	0.0085631	4.8962E-06	571.777058487863	11.092	0.20395	11.092	11.039	11.243	0	669	34	0.875957769340875	0.0223705821148275	0.875957769340875	355.090327607888	0	9.06844782929488						467	24	4	NaN	NaN	NaN	3.9612E-10	1	7826	162.59	148.05	1	232710			18755	641	15830	16292	18755	18755		
TFDHYCEYR	9	Unmodified	_TFDHYCEYR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	430.845117	1289.51352	-1.1212	-0.00048305	0.30825	0.00013281	-0.81293	-0.00035025	430.845381931276	4.6627	0.088685	4.6627	4.6184	4.7071	0	846	25	0.755468431110051	0.0164047100616799	0.755468431110051	458.737197752341	0	9.96130402507634						153	11	3	NaN	NaN	NaN	0.02647	1	12037	48.157	43.618	1	39113			18756	1737	15831	16293	18756	18756		
TFDHYCEYR	9	Unmodified	_TFDHYCEYR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.764037	1289.51352	2.115	0.0013658	0.11196	7.2302E-05	2.227	0.0014381	645.764237438754	4.645	0.11529	4.645	4.6184	4.7337	0	522	31	0.975277694896658	0.0202006798599824	0.975277694896658	394.81010745472	0	8.17760175169713						222	14	3	NaN	NaN	NaN	0.0025252	1	12038	65.156	56.974	1	60611			18757	1737	15831	16293	18757	18757		
TFDQNEELGLNDMK	14	Unmodified	_TFDQNEELGLNDMK_			0	0	0	O75312	O75312	O75312	ZPR1	Zinc finger protein ZPR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.374877	1652.7352	2.3624	0.0019546	4.0781	0.0033741	6.4405	0.0053287	827.379527261892	10.525	0.1419	10.525	10.445	10.587	0	375	46	1.07392668217569	0.030094602206975	1.07392668217569	433.730863234525	0	12.1544217222415						279	17	4	NaN	NaN	NaN	0.065941	1	23124	35.45	32.971	1	52188			18758	317	15832	16294	18758	18758		
TFDSIVMDPK	10	Oxidation (M)	_TFDSIVM(Oxidation (M))DPK_	TFDSIVM(1)DPK	TFDSIVM(65)DPK	0	1	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.781364	1167.54818	1.4859	0.00086892	1.7621	0.0010304	3.2479	0.0018993	584.783339985335	7.9704	0.16851	7.9704	7.8995	8.068	0	573	40	0.940896116921038	0.0263282200540531	0.940896116921038	381.313206302715	0	10.669932444728						477	20	5	NaN	NaN	NaN	0.003956	1	8530	65.404	56.641	1	110690			18759	680	15833	16295	18759	18759	215	
TFDTFCPLGPALVTK	15	Unmodified	_TFDTFCPLGPALVTK_			0	0	0	Q96GK7;Q6P2I3	Q96GK7	Q96GK7	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.929091	1665.84363	2.9867	0.0024907	-3.6662	-0.0030574	-0.67953	-0.00056668	833.926923312916	15.535	0.24842	15.535	15.446	15.695	0	339	40	1.09798411722691	0.0260424797711383	1.09798411722691	443.418048881466	0	10.5171881696415						671	29	5	NaN	NaN	NaN	3.8047E-08	1	23513	78.157	73.328	1	219420			18760	2543	15834	16296	18760	18760		
TFEESFQK	8	Unmodified	_TFEESFQK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.24019	1014.46583	0.67731	0.00034424	0.8324	0.00042306	1.5097	0.0007673	508.240626797486	5.6913	0.33713	5.6913	5.6292	5.9663	0	726	46	0.837263974740672	0.030590200468438	0.837263974740672	339.911770181912	0	12.4189855351974						751	39	4	NaN	NaN	NaN	0.00021964	1	4612	125.5	115.43	1	698610			18761	922	15835	16297	18761	18761		
TFEGHDASVLK	11	Unmodified	_TFEGHDASVLK_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.303852	1202.59315	1.629	0.00098113	1.6943	0.0010205	3.3233	0.0020016	602.304887165948	4.7248	0.14186	4.7248	4.6805	4.8223	0	573	43	0.940896116921038	0.0283554323651288	0.940896116921038	381.183438528885	0	11.4875819078549						241	17	3	NaN	NaN	NaN	0.00060071	1	9542	74.849	60.086	1	62061			18762	1594	15836	16298	18762	18762		
TFEGVDPQTTSMR	13	Unmodified	_TFEGVDPQTTSMR_			0	0	0	P31150	P31150	P31150	GDI1	Rab GDP dissociation inhibitor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.840473	1467.66639	2.3256	0.0017089	-4.6267	-0.0033999	-2.3011	-0.001691	734.837792583289	7.6688	0.28387	7.6688	7.5358	7.8197	0	465	46	1.01360860968299	0.030219453730939	1.01360860968299	409.798861056116	0	12.2176327256631						541	33	4	NaN	NaN	NaN	3.5675E-05	1	17501	86.243	65.092	1	112580			18763	920	15837	16299	18763	18763		
TFEHVTSEIGAEEAEEVGVEHLLR	24	Unmodified	_TFEHVTSEIGAEEAEEVGVEHLLR_			0	0	0	P51665	P51665	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	671.081786	2680.29804	0.9355	0.0006278	-0.28168	-0.00018903	0.65382	0.00043877	671.33255197384	14.338	0.15075	14.338	14.294	14.444	0	558	37	0.951016745717027	0.0242777450705638	0.951016745717027	765.725166601516	0	19.5475847008881						569	18	6	NaN	NaN	NaN	5.2227E-13	1	37547	119.58	119.38	1	179040			18764	1196	15838	16300	18764	18764		
TFEINPR	7	Unmodified	_TFEINPR_			0	0	0	P14625;Q58FF3	P14625	P14625	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	438.732335	875.450116	-1.759	-0.00077172	0.43161	0.00018936	-1.3274	-0.00058236	438.732491730941	6.2323	0.37245	6.2323	6.117	6.4895	0	759	46	0.814815566123307	0.0306498114995809	0.814815566123307	331.500232252854	0	12.4695944125835						466	43	2	NaN	NaN	NaN	0.0054947	1	1940	69.093	47.165	1	229690			18765	700	15839	16301	18765	18765		
TFFENVNLCDHR	12	Unmodified	_TFFENVNLCDHR_			0	0	0	Q9UPU5	Q9UPU5	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.905147	1550.69361	-1.0193	-0.00052789	0.2456	0.0001272	-0.77367	-0.00040069	517.905333775851	10.126	0.070944	10.126	10.099	10.17	0	774	19	0.804600385996946	0.0122624806871617	0.804600385996946	487.699313986744	0	7.43276230410254						119	9	3	NaN	NaN	NaN	0.0042488	1	20060	44.598	36.596	1	30800			18766	3316	15840	16302	18766	18766		
TFFPEYTHQLFGDDETAFGYK	21	Unmodified	_TFFPEYTHQLFGDDETAFGYK_			0	0	0	O14929	O14929	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	838.381379	2512.12231	0.58679	0.00049195	-0.84654	-0.00070972	-0.25975	-0.00021777	838.714784517198	16.342	0.16846	16.342	16.253	16.422	0	534	49	0.967195187796614	0.0323479365760566	0.967195187796614	584.266458119375	0	19.5408481857927						641	20	6	NaN	NaN	NaN	6.1897E-08	1	36886	95.263	92.358	1	218410			18767	126	15841	16303	18767	18767		
TFFSFPAVVAPFK	13	Unmodified	_TFFSFPAVVAPFK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.395013	1456.77547	0.68478	0.00049947	0.69503	0.00050695	1.3798	0.0010064	729.394979120311	19.046	0.25713	19.046	18.949	19.206	0	477	88	1.0055473068722	0.0584404655180625	1.0055473068722	406.568064638227	0	23.6289499259287						1610	30	6	NaN	NaN	NaN	2.3884E-05	1	17159	90.263	76.989	1	1068200			18768	1035	15842	16304	18768	18768		
TFGENYVQELLEK	13	Unmodified	_TFGENYVQELLEK_			0	0	0	O94903	O94903	O94903	PROSC	Proline synthase co-transcribed bacterial homolog protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.393396	1568.77224	1.1744	0.0009224	-2.1821	-0.0017138	-1.0076	-0.00079139	785.390513159678	16.484	0.14184	16.484	16.431	16.573	0	369	82	1.07793901817685	0.0542226293674211	1.07793901817685	435.545017861845	0	21.9088424095573						583	17	3	NaN	NaN	NaN	0.034281	1	20624	30.068	0	1	175290			18769	394	15843	16305	18769	18769		
TFGETHPFTK	10	Unmodified	_TFGETHPFTK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	388.860984	1163.56112	-0.91069	-0.00035413	-0.22122	-8.6022E-05	-1.1319	-0.00044016	388.860958941704	4.8578	0.13301	4.8578	4.8046	4.9376	0	858	28	0.747263789720611	0.018464305033006	0.747263789720611	454.274492356127	0	11.224768162142						224	16	3	NaN	NaN	NaN	0.041356	1	8431	29.755	25.215	1	67562			18770	614	15844	16306	18770	18770		
TFGGFASSSFGEQK	14	Unmodified	_TFGGFASSSFGEQK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.335881	1448.65721	1.32	0.00095747	3.3049	0.0023972	4.625	0.0033547	725.337707375193	10.214	0.14188	10.214	10.179	10.321	0	444	31	1.02770517576159	0.0201282214816578	1.02770517576159	415.54894404437	0	8.13877499059549						238	17	3	NaN	NaN	NaN	0.0039318	1	16931	70.195	65.044	1	72125			18771	978	15845	16307	18771	18771		
TFGMAEEYHR	10	Unmodified	_TFGMAEEYHR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.774405	1239.53426	1.5476	0.00096069	0.20629	0.00012806	1.7539	0.0010887	620.774845744478	5.4697	0.15956	5.4697	5.4342	5.5937	0	534	28	0.967195187796614	0.0181919339867516	0.967195187796614	391.70543231573	0	7.36757115507714						282	19	4	NaN	NaN	NaN	3.8131E-07	1	10599	119.07	97.14	1	74497			18772	2239	15846	16308	18772	18772		
TFHFNTVEEVHSR	13	Unmodified	_TFHFNTVEEVHSR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	401.44694	1601.75865	-2.0363	-0.00081747	1.0536	0.00042295	-0.98275	-0.00039452	401.698168423387	6.4008	0.070897	6.4008	6.3742	6.4451	0	834	16	0.763668499782291	0.0102479437229266	0.763668499782291	617.007966219415	0	8.2798529940892						87	9	3	NaN	NaN	NaN	0.063894	1	21631	14.975	14.572	1	16779			18773	916	15847	16309	18773	18773		
TFHFNTVEEVHSR	13	Unmodified	_TFHFNTVEEVHSR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.886604	1601.75865	2.5126	0.0020148	-2.3892	-0.0019159	0.12337	9.8932E-05	801.884609241419	6.4008	0.23052	6.4008	6.3121	6.5427	0	378	58	1.07192009927972	0.0381303481236166	1.07192009927972	433.035003068036	0	15.4039236952368						696	27	3	NaN	NaN	NaN	0.00045885	1	21632	77.157	52.414	1	256480			18774	916	15847	16309	18774	18774		
TFHFNTVEEVHSR	13	Unmodified	_TFHFNTVEEVHSR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.926828	1601.75865	0.53951	0.0002886	0.83345	0.00044583	1.373	0.00073443	534.927222907169	6.4008	0.22166	6.4008	6.3476	6.5693	0	705	43	0.851531465363931	0.0285250764845424	0.851531465363931	516.000587274573	0	17.2852757845952						527	26	4	NaN	NaN	NaN	6.3083E-08	1	21633	208.63	199.36	1	218160			18775	916	15847	16309	18775	18775		
TFHIFYYLLSGAGEHLK	17	Unmodified	_TFHIFYYLLSGAGEHLK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.015754	1995.02543	-0.15158	-0.00010095	0.51529	0.00034319	0.36372	0.00024224	666.350096756675	17.371	0.1596	17.371	17.309	17.468	0	549	28	0.957085760909907	0.0182020073361659	0.957085760909907	578.983024278952	0	11.0111901000615						302	19	4	NaN	NaN	NaN	0.023323	1	31547	34.472	33.734	1	73310			18776	972	15848	16310	18776	18776		
TFITQQGIK	9	Unmodified	_TFITQQGIK_			0	0	0	Q96CW1	Q96CW1	Q96CW1	AP2M1	AP-2 complex subunit mu	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.295299	1034.57605	0.73822	0.00038262	-0.14778	-7.6593E-05	0.59044	0.00030602	518.295212311136	6.8441	0.1596	6.8441	6.7909	6.9505	0	690	37	0.86171403876517	0.0244296961484468	0.86171403876517	349.746967055296	0	9.91536838165655						243	19	3	NaN	NaN	NaN	0.0086217	1	5113	65.313	44.654	1	99678			18777	2499	15849	16311	18777	18777		
TFLAQHASL	9	Unmodified	_TFLAQHASL_			0	0	0	Q9NPA8	Q9NPA8	Q9NPA8	ENY2	Transcription and mRNA export factor ENY2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.266542	986.51853	-0.21173	-0.00010465	-1.3589	-0.00067164	-1.5706	-0.00077629	494.265888753695	8.831	0.27514	8.831	8.7422	9.0174	0	714	37	0.845418525735192	0.0244568589772431	0.845418525735192	343.352457000517	0	9.93274025199429						388	32	3	NaN	NaN	NaN	0.0044558	1	3983	69.716	63.485	1	98271			18778	2984	15850	16312	18778	18778		
TFLTLSLQDMASR	13	Unmodified	_TFLTLSLQDMASR_			0	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.884684	1481.75481	0.63742	0.00047289	0.70646	0.00052411	1.3439	0.00099701	741.885816161339	16.218	0.11528	16.218	16.182	16.298	0	426	37	1.03977710643793	0.0241338680851122	1.03977710643793	420.341352417803	0	9.75638210070031						235	14	3	NaN	NaN	NaN	0.00037285	1	17970	67.548	55.59	1	56514			18779	3306	15851	16313	18779	18779		
TFLVGER	7	Unmodified	_TFLVGER_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.229428	820.444303	-1.518	-0.00062425	-1.656	-0.00068099	-3.174	-0.0013052	411.228759611089	6.7023	0.19505	6.7023	6.6491	6.8441	8.8818E-16	837	34	0.761618911097395	0.0225454788167756	0.761618911097395	310.17807028322	0	9.18190582075033						310	23	3	NaN	NaN	NaN	0.02927	1	1209	56.091	42.538	1	92888			18780	859	15852	16314	18780	18780		
TFLVWVNEEDHLR	13	Unmodified	_TFLVWVNEEDHLR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.282612	1656.82601	-0.33023	-0.00018271	-0.92195	-0.0005101	-1.2522	-0.00069281	553.281902528079	13.921	0.12415	13.921	13.895	14.019	0	702	22	0.853568545818287	0.0142595640059772	0.853568545818287	517.087775443314	0	8.63837622270114						203	15	4	NaN	NaN	NaN	1.6757E-05	1	23239	106	98.446	1	50279			18781	668	15853	16315	18781	18781		
TFLVWVNEEDHLR	13	Unmodified	_TFLVWVNEEDHLR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.420279	1656.82601	2.7415	0.0022739	0.84138	0.00069786	3.5829	0.0029717	829.42084552891	13.921	0.23939	13.921	13.877	14.116	0	306	46	1.12000185836644	0.0300035355206882	1.12000185836644	452.330147404923	0	12.117393862664						734	28	5	NaN	NaN	NaN	1.5931E-07	1	23243	108.4	95.226	1	280510			18782	668	15853	16315	18782	18782		
TFMDMDQDSEDEK	13	Unmodified	_TFMDMDQDSEDEK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.800353	1589.58615	2.0699	0.0016473	0.44101	0.00035096	2.5109	0.0019982	795.800736025993	8.1213	0.14198	8.1213	8.068	8.21	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	423.326607137416	0	8.12072885924499						260	17	4	NaN	NaN	NaN	3.3948E-05	1	21258	91.245	91.011	1	53567			18783	1921	15854	16316	18783	18783		
TFMDMDQDSEEEK	13	Unmodified	_TFMDMDQDSEEEK_			0	0	0	Q9NTI5	Q9NTI5	Q9NTI5	PDS5B	Sister chromatid cohesion protein PDS5 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.808178	1603.6018	1.8786	0.0015081	0.58838	0.00047236	2.467	0.0019805	802.808823041463	8.1213	0.079813	8.1213	8.0858	8.1656	0	402	22	1.05585747106793	0.0140635259164386	1.05585747106793	426.541797815236	0	5.68133653678802						115	10	3	NaN	NaN	NaN	0.0017156	1	21695	47.361	47.361	1	19032			18784	3041	15855	16317	18784	18784		
TFNDYFR	7	Unmodified	_TFNDYFR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.721967	961.429381	-0.51098	-0.00024615	-0.27959	-0.00013468	-0.79056	-0.00038083	481.722003360433	9.0617	0.12415	9.0617	9.0085	9.1326	0	726	28	0.837263974740672	0.0183490160938558	0.837263974740672	340.162607888881	0	7.45481634823022						191	15	2	NaN	NaN	NaN	0.0086281	1	3463	80.294	66.646	1	44885			18785	1901	15856	16318	18785	18785		
TFNLPLLMLGGGGYTIR	17	Unmodified	_TFNLPLLMLGGGGYTIR_			0	0	0	Q92769	Q92769	Q92769	HDAC2	Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.997839	1821.98113	0.99978	0.0009118	-0.82918	-0.00075621	0.17061	0.00015559	912.498805667931	19.951	0.070947	19.951	19.907	19.978	0	270	34	1.14398322290989	0.0219662910275218	1.14398322290989	461.667906842219	0	8.86475552846616						145	9	4	NaN	NaN	NaN	0.026718	1	27776	41.499	35.801	1	34979			18786	2431	15857	16319	18786	18786		
TFNLTAGSLESTEPIYVYK	19	Unmodified	_TFNLTAGSLESTEPIYVYK_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.04115	2132.06775	1.1473	0.0012242	0.38728	0.00041324	1.5346	0.0016374	1067.54298347407	15.5	0.09767	15.5	15.437	15.535	0	93	97	1.26131825079847	0.0634430763946456	1.26131825079847	508.460157353011	0	25.5750494263916						393	12	2	NaN	NaN	NaN	2.397E-14	1	33769	153.05	140.36	1	204730			18787	2069	15858	16320	18787	18787		
TFNPGAGLPTDK	12	Unmodified	_TFNPGAGLPTDK_			0	0	0	P09661	P09661	P09661	SNRPA1	U2 small nuclear ribonucleoprotein A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.311677	1216.6088	1.4851	0.00090488	0.95121	0.00057958	2.4363	0.0014845	609.31234620086	7.997	0.24842	7.997	7.9172	8.1656	0	564	58	0.946969335010767	0.0384743858858818	0.946969335010767	383.593730432943	0	15.5850170247742						537	29	2	NaN	NaN	NaN	0.0060769	1	9922	36.952	33.059	1	233030			18788	609	15859	16321	18788	18788		
TFNQVEIK	8	Unmodified	_TFNQVEIK_			0	0	0	P62841	P62841	P62841	RPS15	40S ribosomal protein S15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.766374	977.518196	0.78951	0.00038668	-1.864	-0.00091291	-1.0745	-0.00052624	489.765885727917	6.1525	0.20399	6.1525	6.0727	6.2767	0	690	28	0.86171403876517	0.0183209985897086	0.86171403876517	350.014911898938	0	7.44170620275219						289	24	3	NaN	NaN	NaN	0.032867	1	3789	41.025	22.622	1	104220			18789	1402	15860	16322	18789	18789		
TFNQVEIKPEMIGHYLGEFSITYK	24	Unmodified	_TFNQVEIKPEMIGHYLGEFSITYK_			0	0	1	P62841	P62841	P62841	RPS15	40S ribosomal protein S15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	711.862377	2843.4204	0.73762	0.00052508	0.71247	0.00050718	1.4501	0.0010323	712.364627326464	17.486	0.27487	17.486	17.362	17.637	0	504	40	0.987393073566096	0.0262336619569801	0.987393073566096	794.778872303319	0	21.1161702717367						660	32	6	NaN	NaN	NaN	0.030604	1	37989	16.417	15.456	1	198190			18790	1402	15861	16323	18790	18790		
TFNQVEIKPEMIGHYLGEFSITYK	24	Unmodified	_TFNQVEIKPEMIGHYLGEFSITYK_			0	0	1	P62841	P62841	P62841	RPS15	40S ribosomal protein S15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	948.814077	2843.4204	1.7067	0.0016193	0.5056	0.00047972	2.2123	0.002099	949.148886460575	17.486	0.18623	17.486	17.397	17.583	0	264	49	1.14797626962532	0.0319443832387405	1.14797626962532	693.028604621754	0	19.2846942286294						864	22	5	NaN	NaN	NaN	1.4359E-09	1	37990	73.012	71.173	1	222920			18791	1402	15861	16323	18791	18791		
TFNTSTGGLLLPSDTK	16	Unmodified	_TFNTSTGGLLLPSDTK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.430509	1650.84647	1.9755	0.0016326	1.0232	0.00084556	2.9987	0.0024782	826.431865193473	11.961	0.26603	11.961	11.846	12.112	0	327	61	1.10599442759226	0.040046054292028	1.10599442759226	446.686445763947	0	16.1737068581061						1180	31	6	NaN	NaN	NaN	1.5851E-24	1	23084	195.36	157.26	1	1256200			18792	673	15862	16324	18792	18792		
TFNVDMYEEIHR	12	Unmodified	_TFNVDMYEEIHR_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	518.573286	1552.69803	-0.7682	-0.00039837	-0.93432	-0.00048451	-1.7025	-0.00088288	518.572807233074	10.658	0.15078	10.658	10.622	10.773	0	765	25	0.810730346695089	0.0163408788985463	0.810730346695089	491.409317875356	0	9.90472379102704						256	18	4	NaN	NaN	NaN	1.2308E-05	1	20136	64.906	61.298	1	69551			18793	1626	15863	16325	18793	18793		
TFPLDVGSIVGYSGQK	16	Unmodified	_TFPLDVGSIVGYSGQK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.435595	1666.85664	1.5398	0.0012849	-6.4834	-0.00541	-4.9436	-0.0041251	834.932038608013	16.351	0.30145	16.351	16.165	16.466	0	354	64	1.08796502040166	0.042115034279625	1.08796502040166	439.36966997003	0	17.0079629080207						725	35	4	NaN	NaN	NaN	0.0001569	1	23547	61.042	56.514	1	163050			18794	1105	15864	16326	18794	18794		
TFQGHTNEVNAIK	13	Unmodified	_TFQGHTNEVNAIK_			0	0	0	Q9BZK7;O60907;Q9BQ87	Q9BZK7	Q9BZK7	TBL1XR1;TBL1X;TBL1Y	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.91604	1457.72629	-0.21011	-0.0001023	0.89057	0.00043363	0.68046	0.00033133	486.916477023325	4.1484	0.097511	4.1484	4.1219	4.2194	0	810	25	0.78005493425781	0.0163773081327158	0.78005493425781	473.087766022787	0	9.93251087546179						180	12	4	NaN	NaN	NaN	0.0013614	1	17191	77.358	68.381	1	50134			18795	2814	15865	16327	18795	18795		
TFQGHTNEVNAIK	13	Unmodified	_TFQGHTNEVNAIK_			0	0	0	Q9BZK7;O60907;Q9BQ87	Q9BZK7	Q9BZK7	TBL1XR1;TBL1X;TBL1Y	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.870422	1457.72629	2.2106	0.0016134	-1.0947	-0.000799	1.1159	0.00081444	729.869859855522	4.1484	0.053195	4.1484	4.1219	4.1751	0	456	31	1.01965166402748	0.02014212547595	1.01965166402748	412.268288084908	0	8.14391804703365						139	7	3	NaN	NaN	NaN	0.00049027	1	17193	66.953	55.598	1	31323			18796	2814	15865	16327	18796	18796		
TFQNSLIHLGLNTMK	15	Unmodified	_TFQNSLIHLGLNTMK_			0	0	0	Q8NB90	Q8NB90	Q8NB90	SPATA5	Spermatogenesis-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.958714	1715.90288	1.3733	0.0011796	0.22148	0.00019024	1.5947	0.0013698	858.958226909299	13.717	0.053221	13.717	13.7	13.753	0	174	22	1.20774045859593	0.0139172281111795	1.20774045859593	487.62544813902	0	5.61908359222849						88	7	3	NaN	NaN	NaN	0.040214	1	24944	32.759	26.731	1	13893			18797	2285	15866	16328	18797	18797		
TFSFAIPLIEK	11	Unmodified	_TFSFAIPLIEK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.360639	1264.70673	0.93346	0.00059122	-1.6656	-0.0010549	-0.73212	-0.0004637	633.359656161448	17.832	0.29258	17.832	17.743	18.036	0	606	94	0.918606045818476	0.0627914350498548	0.918606045818476	371.945696869909	0	25.4243962070494						1740	34	5	NaN	NaN	NaN	3.4923E-08	1	11358	159.11	104.68	1	1436300			18798	3011	15867	16329	18798	18798		
TFSHELSDFGLESTAGEIPVVAIR	24	Unmodified	_TFSHELSDFGLESTAGEIPVVAIR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1288.15557	2574.29658	-0.11553	-0.00014882	-0.48597	-0.000626	-0.60149	-0.00077482	1288.65649831651	17.051	0.062049	17.051	17.016	17.078	0	63	46	1.28111162701928	0.0296839714567931	1.28111162701928	515.864620760991	0	11.9528309284545						251	8	4	NaN	NaN	NaN	0.045359	1	37135	16.155	15.508	1	41856			18799	904	15868	16330	18799	18799		
TFSHELSDFGLESTAGEIPVVAIR	24	Unmodified	_TFSHELSDFGLESTAGEIPVVAIR_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.106137	2574.29658	1.0804	0.00092814	-0.88264	-0.00075828	0.19771	0.00016986	859.440083984902	17.043	0.30146	17.043	16.954	17.255	0	528	304	0.971237000454584	0.203255382319933	0.971237000454584	586.630092504554	0	122.766867074239						5058	35	7	NaN	NaN	NaN	1.5519E-24	1	37136	206.14	201.27	1	2770800			18800	904	15868	16330	18800	18800		
TFSVWYVPEVTGTHK	15	Unmodified	_TFSVWYVPEVTGTHK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.29815	1749.87262	-0.05225	-3.053E-05	-1.278	-0.00074672	-1.3302	-0.00077725	584.631729080779	13.779	0.10637	13.779	13.735	13.841	0	666	37	0.877991458330206	0.0244059657771015	0.877991458330206	531.648716218847	0	14.7785041077212						386	13	4	NaN	NaN	NaN	1.8253E-06	1	25884	125.17	122.87	1	126940			18801	792	15869	16331	18801	18801		
TFSVWYVPEVTGTHK	15	Unmodified	_TFSVWYVPEVTGTHK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.943587	1749.87262	2.4749	0.0021679	0.96835	0.00084822	3.4433	0.0030161	876.446052593599	13.779	0.15071	13.779	13.717	13.868	0	267	67	1.14597988355104	0.0439235387907617	1.14597988355104	462.617619991351	0	17.7313784200254						761	18	3	NaN	NaN	NaN	1.2247E-11	1	25885	145.08	130.69	1	390670			18802	792	15869	16331	18802	18802		
TFSYAGFEMQPK	12	Unmodified	_TFSYAGFEMQPK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.32647	1404.63839	0.68157	0.00047936	4.0798	0.0028695	4.7614	0.0033488	703.32966590142	11.766	0.15961	11.766	11.695	11.855	0	489	31	0.997481546940468	0.020167188996535	0.997481546940468	403.447661376486	0	8.15694812815946						236	19	3	NaN	NaN	NaN	3.5798E-05	1	15599	66.664	63.319	1	72726			18803	2679	15870	16332	18803	18803		
TFSYAGFEMQPK	12	Oxidation (M)	_TFSYAGFEM(Oxidation (M))QPK_	TFSYAGFEM(1)QPK	TFSYAGFEM(45)QPK	0	1	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.323928	1420.6333	1.4116	0.0010041	2.6219	0.001865	4.0335	0.0028691	711.325977329876	9.4696	0.1596	9.4696	9.4164	9.576	0	444	34	1.02770517576159	0.0221425729106015	1.02770517576159	415.626477116546	0	8.95494134911746						266	19	2	NaN	NaN	NaN	0.014298	1	16105	44.57	41.225	1	118310			18804	2679	15870	16333	18804	18804	620	
TFTDCFNCLPIAAIVDEK	18	Unmodified	_TFTDCFNCLPIAAIVDEK_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.50028	2112.98601	0.67562	0.00071447	1.336	0.0014128	2.0116	0.0021273	1058.00327562481	19.091	0.17733	19.091	18.993	19.171	0	120	115	1.2434810169581	0.0753800056452807	1.2434810169581	501.298940524352	0	30.3888169190862						1575	21	5	NaN	NaN	NaN	7.6426E-07	1	33504	87.251	84.862	1	443280			18805	1366;992;1365	15871	16334	18805	18805		
TFTDHMLMVEWNDK	14	Unmodified	_TFTDHMLMVEWNDK_			0	0	0	O15382	O15382	O15382	BCAT2	Branched-chain-amino-acid aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.600736	1765.78038	-0.52345	-0.00030862	-0.32425	-0.00019118	-0.84769	-0.0004998	589.934426710322	13.558	0.062074	13.558	13.531	13.593	0	738	19	0.829104889055312	0.0122420319698213	0.829104889055312	502.010996299704	0	7.41237296635074						93	8	3	NaN	NaN	NaN	0.030874	1	26285	42.061	41.827	1	17581			18806	171	15872	16335	18806	18806		
TFTDHVMLFTQTK	13	Unmodified	_TFTDHVMLFTQTK_			0	0	0	Q96GQ7	Q96GQ7	Q96GQ7	DDX27	Probable ATP-dependent RNA helicase DDX27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.597431	1567.77046	-2.1577	-0.0011298	0.02333	1.2216E-05	-2.1344	-0.0011175	523.597508258424	11.571	0.15081	11.571	11.536	11.687	0	798	28	0.788241307691771	0.0184129317501174	0.788241307691771	477.737448241509	0	11.1597133303065						216	18	4	NaN	NaN	NaN	0.00017661	1	20587	90.306	83.559	1	55817			18807	2546	15873	16336	18807	18807		
TFTEMDSHEEK	11	Unmodified	_TFTEMDSHEEK_			0	0	0	P48444	P48444	P48444	ARCN1	Coatomer subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.284999	1352.55545	2.3108	0.0015651	-0.8455	-0.00057265	1.4653	0.0009924	677.284441585749	3.4479	0.18634	3.4479	3.4124	3.5987	0	495	34	0.993446994398923	0.0221946439688537	0.993446994398923	401.966648375098	0	8.9803549644202						429	22	4	NaN	NaN	NaN	1.004E-07	1	13950	167.06	157.55	1	106890			18808	1107	15874	16337	18808	18808		
TFTTQETITNAETAK	15	Unmodified	_TFTTQETITNAETAK_			0	0	0	P06744;CON__Q3ZBD7	P06744;CON__Q3ZBD7	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.409774	1654.805	3.5337	0.0029273	-1.0592	-0.00087748	2.4744	0.0020499	828.409112087169	7.261	0.48766	7.261	7.1989	7.6865	0	369	118	1.07793901817685	0.0781706321775537	1.07793901817685	435.346832319941	0	31.5707442861689						2157	56	6	NaN	NaN	NaN	2.8696E-56	1	23190	314.39	276.8	1	2110500		+	18809	546;42	15875	16338	18809	18809		
TFTWLVGK	8	Unmodified	_TFTWLVGK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.268553	950.522553	-0.71296	-0.00033956	-1.7784	-0.00084698	-2.4913	-0.0011865	476.267698018196	12.955	0.11526	12.955	12.91	13.026	0	753	37	0.81889964927511	0.024501095294577	0.81889964927511	332.755393154362	0	9.95588605353095						201	14	3	NaN	NaN	NaN	0.068587	1	3262	34.931	28.169	1	44151			18810	54	15876	16339	18810	18810		
TFVLEVMGR	9	Unmodified	_TFVLEVMGR_			0	0	0	P08237;P17858;Q01813	P08237;P17858;Q01813	Q01813	PFKM;PFKL;PFKP	ATP-dependent 6-phosphofructokinase, muscle type;ATP-dependent 6-phosphofructokinase, liver type;ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.283877	1050.5532	-0.039039	-2.0545E-05	-1.7045	-0.00089706	-1.7436	-0.00091761	526.283217646576	13.327	0.21287	13.327	13.274	13.487	0	678	64	0.869855008346864	0.0427430795707772	0.869855008346864	352.980664226567	0	17.3448223821293						809	25	4	NaN	NaN	NaN	1.8712E-06	1	5483	142.36	108.55	1	346670			18811	578;1521;744	15877	16340	18811	18811		
TFVNITPAEVGVLVGK	16	Unmodified	_TFVNITPAEVGVLVGK_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.650412	1642.92941	-1.6895	-0.00092694	-0.63638	-0.00034915	-2.3259	-0.0012761	548.64991704951	16.865	0.24828	16.865	16.732	16.98	0	726	103	0.837263974740672	0.0692560215808579	0.837263974740672	507.246078059892	0	41.9579086032003						1245	29	4	NaN	NaN	NaN	0.044211	1	22849	47.57	42.742	1	386410			18812	563	15878	16341	18812	18812		
TFVNITPAEVGVLVGK	16	Unmodified	_TFVNITPAEVGVLVGK_			0	0	0	P07737	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.47198	1642.92941	1.7019	0.0013998	1.8317	0.0015065	3.5335	0.0029062	822.473803239896	16.892	0.46998	16.892	16.714	17.184	0	345	184	1.09397730668811	0.121964512168455	1.09397730668811	441.850715996707	0	49.2607174740828						4089	54	6	NaN	NaN	NaN	2.6854E-17	1	22850	186.39	167.57	1	5759600			18813	563	15878	16341	18813	18813		
TFVSGACDASSK	12	Unmodified	_TFVSGACDASSK_			0	0	0	Q9HAV0	Q9HAV0	Q9HAV0	GNB4	Guanine nucleotide-binding protein subunit beta-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.276977	1228.5394	2.6628	0.0016384	-0.2412	-0.00014841	2.4216	0.00149	615.277233646073	3.8824	0.10638	3.8824	3.8381	3.9445	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.420971275883	0	8.21596208883489						203	13	3	NaN	NaN	NaN	1.1945E-05	1	10253	101.82	87.282	1	63658			18814	2946	15879	16342	18814	18814		
TFYEDEMASHLDSK	14	Unmodified	_TFYEDEMASHLDSK_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	558.243494	1671.70865	0.12167	6.7919E-05	1.1596	0.00064736	1.2813	0.00071528	558.244295785917	8.831	0.11542	8.831	8.8044	8.9198	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	528.147587678711	0	12.3233598244067						252	14	4	NaN	NaN	NaN	0.00015297	1	23655	74.524	74.29	1	67942			18815	3283	15880	16343	18815	18815		
TFYEDEMASHLDSK	14	Unmodified	_TFYEDEMASHLDSK_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.861602	1671.70865	2.3835	0.0019946	-0.30618	-0.00025623	2.0773	0.0017384	836.861195150031	8.8399	0.079783	8.8399	8.8133	8.8931	0	279	28	1.13799159301878	0.0179798369779736	1.13799159301878	459.561650632403	0	7.26090035320914						166	10	3	NaN	NaN	NaN	3.5249E-06	1	23656	110.58	107.7	1	37888			18816	3283	15880	16343	18816	18816		
TFYGLHQDFPSVVLVGLGK	19	Unmodified	_TFYGLHQDFPSVVLVGLGK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.04208	2076.10441	-1.1618	-0.00080515	-0.80947	-0.000561	-1.9712	-0.0013662	693.375896659608	17.007	0.097542	17.007	16.972	17.069	0	636	28	0.898312834727904	0.0182778248645526	0.898312834727904	543.282191243826	0	11.0540742152401						249	12	4	NaN	NaN	NaN	1.1465E-05	1	32964	83.474	80.389	1	47480			18817	880	15881	16344	18817	18817		
TFYGLHQDFPSVVLVGLGK	19	Unmodified	_TFYGLHQDFPSVVLVGLGK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.04208	2076.10441	-0.24666	-0.00017095	0.95998	0.00066531	0.71332	0.00049436	693.377408553634	17.025	0.1862	17.025	16.954	17.14	0	492	34	0.995464410099171	0.0221915758833877	0.995464410099171	602.037573944508	0	13.421034816814						501	22	5	NaN	NaN	NaN	0.00031291	1	32965	46.768	46.149	1	133870			18818	880	15881	16344	18818	18818		
TGAAPIIDVVR	11	Unmodified	_TGAAPIIDVVR_			0	0	0	P46776	P46776	P46776	RPL27A	60S ribosomal protein L27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.327131	1110.63971	1.1574	0.00064387	0.027252	1.5161E-05	1.1846	0.00065903	556.327309814637	10.472	0.33696	10.472	10.365	10.702	0	645	82	0.892219381832517	0.0548411235410415	0.892219381832517	361.802425546057	0	22.2385345138628						1142	39	4	NaN	NaN	NaN	0.008086	1	7015	41.824	24.428	1	1305800			18819	1085	15882	16345	18819	18819		
TGAELVTCGSVLK	13	Unmodified	_TGAELVTCGSVLK_			0	0	0	Q9HCN8	Q9HCN8	Q9HCN8	SDF2L1	Stromal cell-derived factor 2-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.852852	1333.69115	1.2739	0.00085078	-5.0347	-0.0033624	-3.7608	-0.0025117	667.851965388616	8.9464	0.17752	8.9464	8.8753	9.0528	0	516	37	0.979317271586824	0.0242341119852805	0.979317271586824	396.306214406647	0	9.80696395237811						339	21	4	NaN	NaN	NaN	0.0013812	1	13398	81.799	58.746	1	137120			18820	2965	15883	16346	18820	18820		
TGAFSIPVIQIVYETLK	17	Unmodified	_TGAFSIPVIQIVYETLK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.032402	1878.05025	1.1711	0.0011009	-0.90169	-0.00084762	0.26942	0.00025326	940.532924028628	20.19	0.044352	20.19	20.155	20.199	0	231	67	1.16991841121525	0.0438390940592615	1.16991841121525	472.027855664765	0	17.6877920414843						142	6	2	NaN	NaN	NaN	1.7404E-06	1	29117	65.12	63.278	1	83205			18821	2404	15884	16347	18821	18821		
TGAICAIDYTWNLLK	15	Unmodified	_TGAICAIDYTWNLLK_			0	0	0	Q05209	Q05209	Q05209	PTPN12	Tyrosine-protein phosphatase non-receptor type 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.945272	1737.87599	1.1505	0.0010009	0.55546	0.00048322	1.706	0.0014841	870.446792414742	18.754	0.079791	18.754	18.718	18.798	0	279	34	1.13799159301878	0.0219753573460744	1.13799159301878	459.417775214058	0	8.87165585704003						176	10	4	NaN	NaN	NaN	0.0012827	1	25548	50.116	47.401	1	30750			18822	1550	15885	16348	18822	18822		
TGAIVDVPVGEELLGR	16	Unmodified	_TGAIVDVPVGEELLGR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.948869	1623.88319	2.8656	0.0023296	-0.62655	-0.00050935	2.239	0.0018202	812.948653485518	15.571	0.30149	15.571	15.491	15.792	-1.7764E-15	354	52	1.08796502040166	0.0340837206319853	1.08796502040166	439.465494615131	0	13.7675558174926						1056	35	6	NaN	NaN	NaN	0.00014039	1	22317	91.939	57.747	1	1080400			18823	840	15886	16349	18823	18823		
TGALLLQGFIQDR	13	Unmodified	_TGALLLQGFIQDR_			0	0	0	Q07812	Q07812	Q07812	BAX	Apoptosis regulator BAX	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.401358	1430.78816	1.2896	0.00092386	-0.80447	-0.00057632	0.48511	0.00034753	716.401110519707	16.076	0.16849	16.076	16.032	16.2	0	465	37	1.01360860968299	0.0241772305983219	1.01360860968299	409.897477789874	0	9.77713266000745						352	20	4	NaN	NaN	NaN	1.3873E-05	1	16426	92.707	73.451	1	209930			18824	1570	15887	16350	18824	18824		
TGCNVLLIQK	10	Unmodified	_TGCNVLLIQK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.320991	1144.62743	1.3906	0.00079727	-2.4849	-0.0014247	-1.0943	-0.0006274	573.319599426533	8.1479	0.31056	8.1479	8.068	8.3785	0	597	43	0.924688525662974	0.0283908138186021	0.924688525662974	374.832442348386	0	11.5085218303699						483	36	4	NaN	NaN	NaN	3.9612E-10	1	7929	150.17	123.23	1	292940			18825	1175	15888	16351	18825	18825		
TGDFQLHTNVNDGTEFGGSIYQK	23	Unmodified	_TGDFQLHTNVNDGTEFGGSIYQK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	843.394458	2527.16155	1.7335	0.001462	0.59173	0.00049906	2.3252	0.0019611	843.729388436591	11.243	0.39915	11.243	11.199	11.598	0	519	79	0.97729762293174	0.0525581496651012	0.97729762293174	590.349838657994	0	31.7484607011289						1628	46	6	NaN	NaN	NaN	7.5422E-42	1	36954	239.38	230.97	1	554140			18826	1070	15889	16352	18826	18826		
TGDLGDINAEQLPGR	15	Unmodified	_TGDLGDINAEQLPGR_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.389176	1554.7638	2.0014	0.0015579	-1.175	-0.00091459	0.82641	0.00064327	778.388439011854	9.8686	0.10641	9.8686	9.8332	9.9396	0	450	43	1.02367897599655	0.0281872971172881	1.02367897599655	413.653660507814	0	11.3900733587274						324	13	3	NaN	NaN	NaN	1.2219E-11	1	20197	142.51	112.16	1	104470			18827	3330	15890	16353	18827	18827		
TGDTGMLPANYVEAI	15	Unmodified	_TGDTGMLPANYVEAI_			0	0	0	Q14847	Q14847	Q14847	LASP1	LIM and SH3 domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.371606	1550.72866	0.47271	0.000367	0.90244	0.00070063	1.3751	0.0010676	776.37209600317	16.927	0.15965	16.927	16.865	17.025	0	429	64	1.03776581230406	0.0422255413252488	1.03776581230406	419.355568162192	0	17.0631135304903						608	19	4	NaN	NaN	NaN	4.8705E-06	1	20066	96.946	85.59	1	162290			18828	1777	15891	16354	18828	18828		
TGEAIVDAALSALR	14	Unmodified	_TGEAIVDAALSALR_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.924424	1385.75144	-1.708	-0.00079066	0.47283	0.00021889	-1.2351	-0.00057178	462.924564662558	17.903	0.20392	17.903	17.849	18.053	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	503.080708438176	0	12.380280375319						392	24	4	NaN	NaN	NaN	0.00086991	1	15023	96.957	80.304	1	231100			18829	1811	15892	16355	18829	18829		
TGEAIVDAALSALR	14	Unmodified	_TGEAIVDAALSALR_			0	0	0	Q15084	Q15084	Q15084	PDIA6	Protein disulfide-isomerase A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.882998	1385.75144	1.0223	0.00070938	0.57573	0.00039949	1.5981	0.0011089	693.883669550991	17.903	0.266	17.903	17.841	18.107	0	396	169	1.05987478976334	0.11278073199716	1.05987478976334	428.740595363949	0	45.6220665394268						1817	31	5	NaN	NaN	NaN	9.8744E-12	1	15025	169.81	137.67	1	1426300			18830	1811	15892	16355	18830	18830		
TGEAYVQFEEPEMANQALLK	20	Unmodified	_TGEAYVQFEEPEMANQALLK_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1134.54628	2267.078	1.0569	0.0011991	-0.46319	-0.00052551	0.59375	0.00067363	1135.04742258917	14.595	0.079774	14.595	14.56	14.639	0	90	61	1.26329880838669	0.0396247377924972	1.26329880838669	509.062223691804	0	15.9672889738679						400	10	4	NaN	NaN	NaN	1.1578E-10	1	35341	103.23	80.836	1	79091			18831	1600	15893	16356	18831	18831		
TGEEDEEEFFCNR	13	Unmodified	_TGEEDEEEFFCNR_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.322841	1660.63113	2.0396	0.0016956	0.77066	0.00064066	2.8102	0.0023362	831.32387173222	9.2568	0.11531	9.2568	9.2213	9.3366	0	408	34	1.0518390438467	0.0221028774104899	1.0518390438467	424.793463569371	0	8.92642073421609						274	14	4	NaN	NaN	NaN	1.1223E-16	1	23350	129.69	129.48	1	57287			18832	1151	15894	16357	18832	18832		
TGEEINFGK	9	Unmodified	_TGEEINFGK_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.745639	993.476725	-0.58521	-0.00029129	-0.39832	-0.00019826	-0.98353	-0.00048955	497.745559469217	5.9485	0.1508	5.9485	5.9041	6.055	0	762	31	0.812773098473386	0.0204232585244036	0.812773098473386	330.062271024068	0	8.29376255554934						198	18	3	NaN	NaN	NaN	1.9276E-05	1	4131	105.81	85.15	1	43321			18833	1157	15895	16358	18833	18833		
TGEGEEYMLALK	12	Unmodified	_TGEGEEYMLALK_			0	0	0	O15318	O15318	O15318	POLR3G	DNA-directed RNA polymerase III subunit RPC7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.82376	1339.63297	1.4011	0.00093989	3.0042	0.0020153	4.4053	0.0029552	670.825920663852	11.119	0.10639	11.119	11.083	11.19	0	477	28	1.0055473068722	0.0181416924529938	1.0055473068722	406.902336892201	0	7.34117331313286						193	13	3	NaN	NaN	NaN	0.0051401	1	13577	47.334	43.989	1	40501			18834	163	15896	16359	18834	18834		
TGEGFIDFIGQVHK	14	Unmodified	_TGEGFIDFIGQVHK_			0	0	0	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.599941	1546.77799	-1.566	-0.00080899	0.13217	6.828E-05	-1.4338	-0.00074071	516.599679406213	13.992	0.053212	13.992	13.957	14.01	0	765	16	0.810730346695089	0.0102137591879432	0.810730346695089	491.425914401164	0	6.19109173459367						95	7	3	NaN	NaN	NaN	0.0017289	1	19947	47.334	35.377	1	18135			18835	627	15897	16360	18835	18835		
TGEGFIDFIGQVHK	14	Unmodified	_TGEGFIDFIGQVHK_			0	0	0	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.396273	1546.77799	2.0749	0.0016068	1.5151	0.0011733	3.59	0.0027801	774.397138960826	13.974	0.133	13.974	13.921	14.054	0	348	37	1.09197348738011	0.0240474923010432	1.09197348738011	441.270568196402	0	9.71768153166346						358	16	4	NaN	NaN	NaN	0.05739	1	19949	44.598	29.623	1	100120			18836	627	15897	16360	18836	18836		
TGEGFLCVFAINNTK	15	Unmodified	_TGEGFLCVFAINNTK_			0	0	0	P01116;P01112	P01116;P01112	P01112	KRAS;HRAS	GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.913972	1669.81339	1.4699	0.0012287	4.5814	0.0038297	6.0513	0.0050584	836.419361876727	16.564	0.097538	16.564	16.51	16.608	0	330	10	1.10399226369747	0.00600649174132761	1.10399226369747	445.835649115324	0	2.4256584329965						54	12	2	NaN	NaN	NaN	2.1528E-07	1	23618	99.589	86.414	1	9188.6			18837	490;489	15898	16361	18837	18837		
TGEGFLCVFAINNTK	15	Unmodified	_TGEGFLCVFAINNTK_			0	0	0	P01116;P01112	P01116;P01112	P01112	KRAS;HRAS	GTPase KRas;GTPase KRas, N-terminally processed;GTPase HRas;GTPase HRas, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.913972	1669.81339	1.807	0.0015105	4.5429	0.0037975	6.3499	0.005308	835.916558242592	16.537	0.11526	16.537	16.484	16.599	0	336	25	1.09998710857178	0.0160250356219411	1.09998710857178	444.218209538675	0	6.47154187199067						156	14	3	NaN	NaN	NaN	0.0035266	1	23619	50.314	44.286	1	33418			18838	490;489	15898	16361	18838	18838		
TGEMSGPVFTDSGIHIILR	19	Unmodified	_TGEMSGPVFTDSGIHIILR_			0	0	0	Q13526	Q13526	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	677.350697	2029.03026	0.017939	1.2151E-05	-0.47323	-0.00032054	-0.45529	-0.00030839	677.350474828255	15.047	0.133	15.047	15.003	15.136	-1.7764E-15	630	37	0.902373728295776	0.0243619867259138	0.902373728295776	545.822171076754	0	14.7359260021839						425	16	5	NaN	NaN	NaN	8.1438E-11	1	32139	139.61	126.4	1	149680			18839	1678	15899	16362	18839	18839		
TGEMSGPVFTDSGIHIILR	19	Oxidation (M)	_TGEM(Oxidation (M))SGPVFTDSGIHIILR_	TGEM(1)SGPVFTDSGIHIILR	TGEM(89)SGPVFTDSGIHIILR	0	1	0	Q13526	Q13526	Q13526	PIN1	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.682335	2045.02518	0.75466	0.00051519	-0.49173	-0.00033569	0.26293	0.0001795	683.016232321705	13.939	0.088654	13.939	13.903	13.992	0	561	31	0.948993180460448	0.0202398580816178	0.948993180460448	573.990571990973	0	12.2419085368423						204	11	4	NaN	NaN	NaN	3.197E-07	1	32443	89.359	83.155	1	42774			18840	1678	15899	16363	18840	18840	556	
TGESILSLLR	10	Unmodified	_TGESILSLLR_			0	0	0	Q92685	Q92685	Q92685	ALG3	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.819138	1087.62372	-0.57397	-0.00031271	-0.6307	-0.00034362	-1.2047	-0.00065633	544.81915722681	15.987	0.16846	15.987	15.925	16.094	1.7764E-15	669	46	0.875957769340875	0.0305138129080004	0.875957769340875	355.300327818226	0	12.3768155368431						423	20	3	NaN	NaN	NaN	0.00014916	1	6418	93.467	76.072	1	162030			18841	2427	15900	16364	18841	18841		
TGESTVLSSIPLPSDDFK	18	Unmodified	_TGESTVLSSIPLPSDDFK_			0	0	0	Q9NP74	Q9NP74	Q9NP74	PALMD	Palmdelphin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.978021	1891.94149	1.0938	0.0010358	-2.8679	-0.0027159	-1.7742	-0.0016801	946.974967895277	16.324	0.18622	16.324	16.245	16.431	0	258	43	1.15196821829984	0.027932123570007	1.15196821829984	464.760459503287	0	11.2691881417167						366	22	3	NaN	NaN	NaN	0.00010549	1	29414	72.327	59.109	1	77390			18842	2977	15901	16365	18842	18842		
TGFFEFQAAK	10	Unmodified	_TGFFEFQAAK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.284931	1144.55531	0.5287	0.0003031	1.0643	0.00061014	1.593	0.00091324	573.285161542983	12.254	0.23056	12.254	12.183	12.414	0	609	40	0.916577990479294	0.0263683793700451	0.916577990479294	371.545012595329	0	10.688713832239						513	27	4	NaN	NaN	NaN	0.0077045	1	7910	49.96	33.503	1	171240			18843	3161	15902	16366	18843	18843		
TGFINLDK	8	Unmodified	_TGFINLDK_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.247818	906.481082	-1.5903	-0.00072237	-1.2931	-0.00058741	-2.8834	-0.0013098	454.247384562116	8.7599	0.21306	8.7599	8.7068	8.9198	0	780	31	0.800512323802183	0.020440313348464	0.800512323802183	325.508975396568	0	8.31155905663161						314	25	3	NaN	NaN	NaN	0.014717	1	2440	39.324	25.772	1	78357			18844	287	15903	16367	18844	18844		
TGFQAVTGK	9	Unmodified	_TGFQAVTGK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.745442	907.476331	-0.70169	-0.00031909	1.3647	0.00062057	0.66297	0.00030148	454.745562629205	4.5475	0.23055	4.5475	4.5031	4.7337	0	801	34	0.78619514174348	0.0225078287031693	0.78619514174348	319.681994663836	0	9.15211401513443						345	27	3	NaN	NaN	NaN	0.056572	1	2460	32.14	24.137	1	108940			18845	776	15904	16368	18845	18845		
TGFSSDQIEQLHR	13	Unmodified	_TGFSSDQIEQLHR_			0	0	0	Q96BS2	Q96BS2	Q96BS2	TESC	Calcineurin B homologous protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.58295	1516.72702	-1.7048	-0.00086364	1.103	0.00055874	-0.60188	-0.0003049	506.583700321634	7.4826	0.10642	7.4826	7.4383	7.5447	0	798	25	0.788241307691771	0.0163681894120964	0.788241307691771	477.877994491112	0	9.92335399499507						217	13	4	NaN	NaN	NaN	1.1466E-09	1	19028	136.94	122.49	1	75936			18846	2486	15905	16369	18846	18846		
TGFSTSPESPYTHWK	15	Unmodified	_TGFSTSPESPYTHWK_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.60201	1723.7842	-0.26722	-0.00015381	-0.0056645	-3.2605E-06	-0.27288	-0.00015707	575.602009166053	8.3874	0.18629	8.3874	8.3342	8.5205	0	735	34	0.831145085810763	0.0224421675628655	0.831145085810763	503.341702332639	0	13.5909831123022						599	22	5	NaN	NaN	NaN	2.0892E-12	1	25145	186.27	163.31	1	368760			18847	2681	15906	16370	18847	18847		
TGFSTSPESPYTHWK	15	Unmodified	_TGFSTSPESPYTHWK_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.899377	1723.7842	2.9838	0.0025747	-2.786	-0.002404	0.19781	0.00017069	863.397160532528	8.3785	0.3016	8.3785	8.2277	8.5293	0	324	82	1.1079963157843	0.0540882631408484	1.1079963157843	447.337351651107	0	21.8373473306257						657	35	5	NaN	NaN	NaN	0.0054089	1	25146	56.938	53.202	1	179390			18848	2681	15906	16370	18848	18848		
TGGADQSLQQGEGSK	15	Unmodified	_TGGADQSLQQGEGSK_			0	0	0	P09132	P09132	P09132	SRP19	Signal recognition particle 19 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.842059	1461.66956	1.9534	0.0014296	-1.7733	-0.0012978	0.18011	0.00013181	731.841470013819	2.5168	0.10641	2.5168	2.499	2.6055	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	391.866162985695	0	6.53662072935771						99	13	2	NaN	NaN	NaN	0.00016469	1	17309	75.5	70.672	1	21222			18849	598	15907	16371	18849	18849		
TGGAYGEDLGADYNLSQVCDGK	22	Unmodified	_TGGAYGEDLGADYNLSQVCDGK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1145.50005	2288.98556	1.5087	0.0017282	-0.0086903	-9.9547E-06	1.5	0.0017182	1146.0016783397	11.536	0.13315	11.536	11.483	11.616	0	129	112	1.23753038177212	0.0734617559896182	1.23753038177212	498.649431585333	0	29.6006170087136						1206	16	5	NaN	NaN	NaN	8.4295E-23	1	35550	164.22	157.83	1	321230			18850	1127	15908	16372	18850	18850		
TGGLEIDSDFGGFR	14	Unmodified	_TGGLEIDSDFGGFR_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.846613	1469.67867	1.4566	0.0010718	0.11319	8.3293E-05	1.5698	0.0011551	735.847257898765	13.921	0.17734	13.921	13.85	14.028	0	477	82	1.0055473068722	0.0544928682542128	1.0055473068722	406.534484327227	0	22.0310172816697						548	21	4	NaN	NaN	NaN	6.8434E-09	1	17568	129.69	118.33	1	243870			18851	458	15909	16373	18851	18851		
TGGMAFHSYFMEAIAPPLLQELK	23	Unmodified	_TGGMAFHSYFMEAIAPPLLQELK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.095639	2550.26509	0.3182	0.00027082	0.30425	0.00025895	0.62245	0.00052977	851.430219366696	19.685	0.12417	19.685	19.605	19.729	0	510	22	0.983355730988811	0.0141336312935816	0.983355730988811	593.979892023769	0	8.53718804406981						248	15	5	NaN	NaN	NaN	0.026858	1	37031	18.927	18.713	1	47025			18852	1127	15910	16374	18852	18852		
TGGTQTDLFTCGK	13	Unmodified	_TGGTQTDLFTCGK_			0	0	0	P23193;Q15560	P23193	P23193	TCEA1;TCEA2	Transcription elongation factor A protein 1;Transcription elongation factor A protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.321916	1384.62928	1.3613	0.00094381	-0.47969	-0.00033258	0.8816	0.00061123	693.322509396555	6.9949	0.2129	6.9949	6.9239	7.1368	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.606947377437	0	8.16599636249083						445	25	4	NaN	NaN	NaN	9.1408E-17	1	14958	181.87	166.72	1	146370			18853	813	15911	16375	18853	18853		
TGIEQGSDAGYLCESQK	17	Unmodified	_TGIEQGSDAGYLCESQK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.912355	1841.81016	2.8023	0.0025835	-0.56917	-0.00052472	2.2332	0.0020588	921.911367121298	7.0126	0.24835	7.0126	6.9505	7.1989	0	312	64	1.11600111266355	0.0420223118380454	1.11600111266355	450.338763160988	0	16.9572195973392						953	29	5	NaN	NaN	NaN	1.218E-25	1	28274	215.61	181.41	1	370670			18854	1026	15912	16376	18854	18854		
TGISDVFAK	9	Unmodified	_TGISDVFAK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.2531	936.491647	-0.69977	-0.00032837	0.21395	0.0001004	-0.48582	-0.00022797	469.253265662898	9.5051	0.35467	9.5051	9.4164	9.7711	0	747	52	0.822982596624503	0.0346978263217897	0.822982596624503	334.485875972868	0	14.1022822100984						1272	41	4	NaN	NaN	NaN	0.0056208	1	3003	74.486	37.917	1	1614300			18855	764	15913	16377	18855	18855		
TGISHGHTVYVVHDGFEGLAK	21	Unmodified	_TGISHGHTVYVVHDGFEGLAK_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	742.043032	2223.10727	2.8815	0.0021382	-1.1	-0.00081623	1.7815	0.001322	742.37602850606	7.6956	0.097611	7.6956	7.66	7.7576	-8.8818E-16	438	31	1.03173026378327	0.0201226639147589	1.03173026378327	623.696513542813	0	12.1644539928561						288	12	5	NaN	NaN	NaN	1.6183E-08	1	34922	89.923	82.275	1	81722			18856	744	15914	16378	18856	18856		
TGISHGHTVYVVHDGFEGLAK	21	Unmodified	_TGISHGHTVYVVHDGFEGLAK_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	556.784093	2223.10727	2.3548	0.0013111	0.51879	0.00028885	2.8736	0.0016	557.03491310328	7.6956	0.1331	7.6956	7.6511	7.7842	0	597	28	0.924688525662974	0.018242384517949	0.924688525662974	745.315454665201	0	14.7036874945804						342	16	5	NaN	NaN	NaN	0.0097861	1	34923	38.839	38.32	1	124510			18857	744	15914	16378	18857	18857		
TGIVDISILTTGMSATSR	18	Unmodified	_TGIVDISILTTGMSATSR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.982583	1821.95061	1.3629	0.0012429	-0.54595	-0.0004979	0.81693	0.00074503	912.483783988994	17.513	0.19509	17.513	17.459	17.654	0	261	58	1.14997238118939	0.0379365683259716	1.14997238118939	464.084959944848	0	15.3097509818404						651	23	5	NaN	NaN	NaN	2.2937E-07	1	27774	89.359	62.894	1	184340			18858	950	15915	16379	18858	18858		
TGIYEEK	7	Unmodified	_TGIYEEK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.210901	838.407249	-0.99826	-0.00041948	1.853	0.00077867	0.85479	0.00035919	420.211744843664	2.8804	0.18623	2.8804	2.8272	3.0134	0	804	19	0.78414869089473	0.0122795604485167	0.78414869089473	319.241128563113	0	4.9992313720125						161	22	2	NaN	NaN	NaN	0.050781	1	1411	30.562	14.014	1	27722			18859	870	15916	16380	18859	18859		
TGLFSATQTQEVENLVR	17	Unmodified	_TGLFSATQTQEVENLVR_			0	0	0	Q8NHQ9	Q8NHQ9	Q8NHQ9	DDX55	ATP-dependent RNA helicase DDX55	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.989254	1891.96396	1.5428	0.001461	-2.5	-0.0023675	-0.95722	-0.00090648	946.986429389705	15.331	0.13299	15.331	15.296	15.429	0	243	40	1.16194328902838	0.0259351883053607	1.16194328902838	468.78485032382	0	10.4635256149335						282	16	4	NaN	NaN	NaN	1.4958E-06	1	29418	91.993	74.722	1	62525			18860	2325	15917	16381	18860	18860		
TGLIPSNYVAEQAESIDNPLHEAAK	25	Unmodified	_TGLIPSNYVAEQAESIDNPLHEAAK_			0	0	0	Q92882	Q92882	Q92882	OSTF1	Osteoclast-stimulating factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.780201	2666.31877	2.2443	0.0019969	0.87343	0.00077716	3.1177	0.0027741	890.11557617207	14.657	0.10642	14.657	14.613	14.719	0	348	43	1.09197348738011	0.0280554094154091	1.09197348738011	659.43303937579	0	16.9424112540704						496	13	5	NaN	NaN	NaN	0.01552	1	37494	21.708	16.132	1	133900			18861	2438	15918	16382	18861	18861		
TGLLGIFWK	9	Unmodified	_TGLLGIFWK_			0	0	0	Q8TBQ9	Q8TBQ9	Q8TBQ9	TMEM167A	Protein kish-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.805303	1033.59605	-0.85434	-0.00044238	-0.62519	-0.00032373	-1.4795	-0.00076611	517.804886351468	18.133	0.14186	18.133	18.089	18.231	0	702	31	0.853568545818287	0.0203693921717962	0.853568545818287	346.445242011909	0	8.26750122783432						300	17	3	NaN	NaN	NaN	0.012269	1	5099	62.88	51.52	1	121320			18862	2337	15919	16383	18862	18862		
TGLSLWDTSPSYIDK	15	Unmodified	_TGLSLWDTSPSYIDK_			0	0	0	O14757	O14757	O14757	CHEK1	Serine/threonine-protein kinase Chk1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.917235	1681.81992	2.2765	0.0019166	3.1925	0.0026878	5.4689	0.0046044	841.919630478353	14.533	0.11527	14.533	14.471	14.586	0	330	28	1.10399226369747	0.0180219585997581	1.10399226369747	445.809458423704	0	7.27755063806705						183	14	3	NaN	NaN	NaN	0.0041029	1	23959	52.863	36.576	1	42312			18863	117	15920	16384	18863	18863		
TGLTPLMEAASGGYAEVGR	19	Unmodified	_TGLTPLMEAASGGYAEVGR_			0	0	0	Q8IWZ3;O75179	Q8IWZ3;O75179	Q8IWZ3	ANKHD1;ANKRD17	Ankyrin repeat and KH domain-containing protein 1;Ankyrin repeat domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.464558	1878.91456	1.1139	0.0010476	0.62917	0.00059171	1.7431	0.0016393	940.465774338277	14.755	0.20397	14.755	14.648	14.852	0	225	52	1.17390432875292	0.0338826381557076	1.17390432875292	473.634453816482	0	13.6706070704998						510	24	4	NaN	NaN	NaN	2.7089E-07	1	29132	115.79	113.81	1	118300			18864	2207;311	15921	16385	18864	18864		
TGLVEFAR	8	Unmodified	_TGLVEFAR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.747985	891.481417	-0.32151	-0.00014364	0.072901	3.2568E-05	-0.24861	-0.00011107	446.748002401556	8.3697	0.1242	8.3697	8.3342	8.4584	0	726	28	0.837263974740672	0.0183515663260597	0.837263974740672	340.53860880496	0	7.46409382776079						195	15	3	NaN	NaN	NaN	0.021432	1	2195	60.709	46.044	1	63669			18865	929	15922	16386	18865	18865		
TGNFQVTELGR	11	Unmodified	_TGNFQVTELGR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.314751	1220.61495	0.59198	0.00036188	0.077107	4.7137E-05	0.66909	0.00040902	611.31493985894	8.5736	0.1863	8.5736	8.5293	8.7156	0	630	40	0.902373728295776	0.0263903231913262	0.902373728295776	365.515705347004	0	10.6896702476374						336	22	3	NaN	NaN	NaN	1.9543E-07	1	10033	130.79	97.362	1	139260			18866	350	15923	16387	18866	18866		
TGPAAAQVQVGK	12	Unmodified	_TGPAAAQVQVGK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.814387	1125.61422	1.5922	0.00089772	0.2165	0.00012207	1.8087	0.0010198	563.814702202323	4.0864	0.13302	4.0864	4.0509	4.1839	0	654	31	0.886123392477847	0.0203270164952024	0.886123392477847	359.271850690566	0	8.2414310436248						162	16	3	NaN	NaN	NaN	0.0006427	1	7416	97.277	93.384	1	43016			18867	1666	15924	16388	18867	18867		
TGPAATTLPDGAAAESLVESSEVAVIGFFK	30	Unmodified	_TGPAATTLPDGAAAESLVESSEVAVIGFFK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	979.169354	2934.48623	1.3081	0.0012809	0.53186	0.00052078	1.84	0.0018016	979.504468901767	20.164	0.044352	20.164	20.155	20.199	0	192	103	1.1958073123591	0.0676119705568607	1.1958073123591	721.79494968733	0	40.8109052202345						402	6	5	NaN	NaN	NaN	1.1398E-21	1	38126	169.6	164.95	1	202130			18868	554	15925	16389	18868	18868		
TGPFAEHSNQLWNISAVPSWSK	22	Unmodified	_TGPFAEHSNQLWNISAVPSWSK_			0	0	0	Q15257	Q15257	Q15257	PPP2R4	Serine/threonine-protein phosphatase 2A activator	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	819.404629	2455.19206	0.54865	0.00044957	0.12988	0.00010642	0.67853	0.00055599	819.73886304279	15.189	0.12413	15.189	15.127	15.251	0	576	31	0.938871150116794	0.0202510727946275	0.938871150116794	567.228714088518	0	12.2348950426057						374	15	4	NaN	NaN	NaN	2.2036E-08	1	36596	73.345	68.263	1	84641			18869	1825	15926	16390	18869	18869		
TGPLLIELR	9	Unmodified	_TGPLLIELR_			0	0	0	Q9Y6W3	Q9Y6W3	Q9Y6W3	CAPN7	Calpain-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.313492	1010.61243	-0.60898	-0.00030834	-0.82712	-0.00041878	-1.4361	-0.00072712	506.313014106798	13.167	0.15963	13.167	13.105	13.265	0	687	34	0.863749705078866	0.0223892235225879	0.863749705078866	350.682327865468	0	9.09002339200163						268	19	3	NaN	NaN	NaN	0.0032423	1	4534	54.436	44.357	1	69550			18870	3475	15927	16391	18870	18870		
TGQATVASGIPAGWMGLDCGPESSK	25	Unmodified	_TGQATVASGIPAGWMGLDCGPESSK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1239.07541	2476.13626	0.39325	0.00048727	0.22683	0.00028106	0.62008	0.00076833	1239.57723837388	14.799	0.15961	14.799	14.719	14.879	0	66	64	1.27913350869533	0.041574645421063	1.27913350869533	515.177806123251	0	16.7444089868471						1044	19	4	NaN	NaN	NaN	2.4086E-13	1	36711	85.562	85.348	1	242300			18871	484	15928	16392	18871	18871		
TGQATVASGIPAGWMGLDCGPESSK	25	Unmodified	_TGQATVASGIPAGWMGLDCGPESSK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	826.386029	2476.13626	0.58351	0.0004822	0.65878	0.00054441	1.2423	0.0010266	826.720871384883	14.781	0.17734	14.781	14.719	14.897	0	522	97	0.975277694896658	0.0645886281438801	0.975277694896658	589.196058503024	0	39.0200302186998						1095	21	4	NaN	NaN	NaN	1.5436E-13	1	36712	100.23	97.167	1	209850			18872	484	15928	16392	18872	18872		
TGQATVASGIPAGWMGLDCGPESSK	25	Oxidation (M)	_TGQATVASGIPAGWM(Oxidation (M))GLDCGPESSK_	TGQATVASGIPAGWM(1)GLDCGPESSK	TGQATVASGIPAGWM(40)GLDCGPESSK	0	1	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1247.07286	2492.13117	1.4248	0.0017768	-0.54787	-0.00068324	0.8769	0.0010936	1247.57316099574	12.804	0.088668	12.804	12.751	12.839	0	63	40	1.28111162701928	0.0257261069079902	1.28111162701928	515.956012354302	0	10.3609547003568						205	11	3	NaN	NaN	NaN	0.0025026	1	36787	40.363	35.766	1	33209			18873	484	15928	16393	18873	18873	75	
TGQEIPVNVR	10	Unmodified	_TGQEIPVNVR_			0	0	0	Q96KP4	Q96KP4	Q96KP4	CNDP2	Cytosolic non-specific dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.806562	1111.59857	0.43756	0.00024364	0.47443	0.00026417	0.91199	0.0005078	556.806856726987	6.3476	0.12413	6.3476	6.3121	6.4363	0	660	46	0.882057989648486	0.0304968767527163	0.882057989648486	357.678112222732	0	12.3666079028975						279	15	3	NaN	NaN	NaN	4.306E-05	1	7040	103.8	95.041	1	78702			18874	2577	15929	16394	18874	18874		
TGQEVVFVAEPDNK	14	Unmodified	_TGQEVVFVAEPDNK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.883195	1531.75184	2.2544	0.0017289	-0.57615	-0.00044184	1.6783	0.001287	767.384042169742	8.5914	0.23953	8.5914	8.4938	8.7334	0	429	94	1.03776581230406	0.062350189424925	1.03776581230406	419.40154571389	0	25.1981376822476						899	28	4	NaN	NaN	NaN	3.5249E-06	1	19486	102.03	79.131	1	285400			18875	519	15930	16395	18875	18875		
TGQEVVFVAEPDNK	14	Unmodified	_TGQEVVFVAEPDNK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.883195	1531.75184	2.5713	0.0019719	-0.54224	-0.00041583	2.0291	0.0015561	767.384023176421	8.6002	0.16857	8.6002	8.547	8.7156	0	342	34	1.09598084995137	0.0220420155259144	1.09598084995137	442.928507523366	0	8.9080361578703						236	20	3	NaN	NaN	NaN	1.1543E-11	1	19487	145.08	113.03	1	47193			18876	519	15930	16395	18876	18876		
TGQGDYPLNNELDK	14	Unmodified	_TGQGDYPLNNELDK_			0	0	0	O94874	O94874	O94874	UFL1	E3 UFM1-protein ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.367909	1562.72127	2.5256	0.0019759	0.84494	0.00066106	3.3705	0.002637	782.870846822653	7.7664	0.19512	7.7664	7.7132	7.9083	0	423	79	1.04178812298108	0.0522323894599872	1.04178812298108	420.952372029914	0	21.105393462401						437	23	3	NaN	NaN	NaN	0.0027281	1	20430	72.031	58.857	1	110700			18877	391	15931	16396	18877	18877		
TGQPMIHIYLDK	12	Unmodified	_TGQPMIHIYLDK_			0	0	0	Q01844	Q01844	Q01844	EWSR1	RNA-binding protein EWS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.371212	1414.72787	2.422	0.0017156	-1.1463	-0.00081201	1.2756	0.00090363	708.370445770805	9.842	0.18617	9.842	9.7889	9.975	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	418.898568694431	0	8.13612697854398						298	22	2	NaN	NaN	NaN	0.0028655	1	15930	68.548	55.952	1	108950			18878	1523	15932	16397	18878	18878		
TGQPMINLYTDR	12	Unmodified	_TGQPMINLYTDR_			0	0	0	P35637	P35637	P35637	FUS	RNA-binding protein FUS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.848101	1407.68165	2.1925	0.0015454	0.75644	0.00053318	2.9489	0.0020785	704.849238623228	10.152	0.30147	10.152	10.055	10.356	0	471	49	1.00957851518677	0.0322496762146521	1.00957851518677	408.331884024627	0	13.0436324167189						1338	35	5	NaN	NaN	NaN	0.0033355	1	15692	84.309	75.048	1	1047900			18879	977	15933	16398	18879	18879		
TGQQAEPLVVDLK	13	Unmodified	_TGQQAEPLVVDLK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.385374	1396.75619	1.7015	0.00119	1.35	0.00094417	3.0515	0.0021342	699.386432331249	10.33	0.21278	10.33	10.241	10.454	0	465	49	1.01360860968299	0.0322407656624188	1.01360860968299	409.993079653737	0	13.0410206445106						775	25	4	NaN	NaN	NaN	2.6439E-05	1	15353	112.73	92.544	1	343540			18880	1489	15934	16399	18880	18880		
TGQYSGIYDCAK	12	Unmodified	_TGQYSGIYDCAK_			0	0	0	Q6NUK1	Q6NUK1	Q6NUK1	SLC25A24	Calcium-binding mitochondrial carrier protein SCaMC-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.803359	1361.59217	2.2056	0.0015038	0.075856	5.1719E-05	2.2814	0.0015555	681.803147750571	5.7002	0.15962	5.7002	5.6559	5.8155	0	495	37	0.993446994398923	0.0242106659523326	0.993446994398923	401.939656620707	0	9.7954161765087						348	19	4	NaN	NaN	NaN	0.00047362	1	14243	50.09	46.197	1	108620			18881	2045	15935	16400	18881	18881		
TGREDIANLADEFK	14	Unmodified	_TGREDIANLADEFK_			0	0	1	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	526.930126	1577.76855	-0.94158	-0.00049615	-0.91184	-0.00048048	-1.8534	-0.00097662	526.929499459972	11.279	0.088686	11.279	11.252	11.341	0	762	37	0.812773098473386	0.0245113207191667	0.812773098473386	492.578389184116	0	14.8550030744132						273	11	4	NaN	NaN	NaN	0.0047596	1	20904	55.578	52.907	1	70221			18882	2674	15936	16401	18882	18882		
TGSQYDIQDAIDK	13	Unmodified	_TGSQYDIQDAIDK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.343903	1452.67325	1.6842	0.001225	0.37893	0.00027561	2.0632	0.0015006	727.344074357835	8.7334	0.31069	8.7334	8.6446	8.9553	0	480	58	1.00353128488872	0.0382938495713495	1.00353128488872	405.763716675183	0	15.4835778035501						760	36	3	NaN	NaN	NaN	2.7475E-24	1	17043	233	133.82	1	403970			18883	718	15937	16402	18883	18883		
TGTAYTFFTPNNIK	14	Unmodified	_TGTAYTFFTPNNIK_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.896106	1573.77766	1.7721	0.0013962	2.231	0.0017578	4.003	0.003154	787.897709770185	12.609	0.26603	12.609	12.502	12.768	0	378	79	1.07192009927972	0.0522035796662552	1.07192009927972	433.100983111427	0	21.0924505386019						961	31	5	NaN	NaN	NaN	1.2867E-07	1	20784	123.42	99.584	1	450820			18884	743	15938	16403	18884	18884		
TGTDSNSTESSETSTGSLCK	20	Unmodified	_TGTDSNSTESSETSTGSLCK_			0	0	0	Q8N3X1	Q8N3X1	Q8N3X1	FNBP4	Formin-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1024.93167	2047.84879	2.7861	0.0028555	-1.7447	-0.0017882	1.0413	0.0010673	1024.93019153425	3.5721	0.026572	3.5721	3.5544	3.581	0	246	19	1.1599488233373	0.0119676171110454	1.1599488233373	467.720757574153	0	4.82564646725615						31	4	2	NaN	NaN	NaN	0.040103	1	32489	28.432	28.309	1	5222.8			18885	2250	15939	16404	18885	18885		
TGTITTFEHAHNMR	14	Unmodified	_TGTITTFEHAHNMR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.259701	1614.75727	1.0197	0.0005499	1.1325	0.00061072	2.1523	0.0011606	539.260484136521	4.8135	0.23942	4.8135	4.7603	4.9997	0	732	49	0.833184998970724	0.032640889258064	0.833184998970724	504.848418730777	0	19.7779620951612						908	28	6	NaN	NaN	NaN	6.9334E-12	1	22033	148.9	136.3	1	902870			18886	679	15940	16405	18886	18886		
TGTITTFEHAHNMR	14	Oxidation (M)	_TGTITTFEHAHNM(Oxidation (M))R_	TGTITTFEHAHNM(1)R	TGTITTFEHAHNM(53)R	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.591339	1630.75219	-0.017306	-9.4246E-06	2.1903	0.0011928	2.173	0.0011834	544.592528193376	3.5455	0.17735	3.5455	3.5012	3.6785	0	768	28	0.808687310729125	0.0183898836962016	0.808687310729125	489.963800169048	0	11.1419793298522						265	21	4	NaN	NaN	NaN	0.015204	1	22501	53.028	44.653	1	83221			18887	679	15940	16406	18887	18887	211	
TGTIVVEGHELHDEDIR	17	Unmodified	_TGTIVVEGHELHDEDIR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	960.476511	1918.93847	2.3449	0.0022522	-0.90299	-0.0008673	1.4419	0.0013849	960.977323865902	7.3762	0.070909	7.3762	7.3496	7.4205	0	150	67	1.22363604450103	0.0437188805283268	1.22363604450103	493.624202193483	0	17.6365330349416						327	9	3	NaN	NaN	NaN	1.2686E-10	1	30033	117.41	106.92	1	81359			18888	1036	15941	16407	18888	18888		
TGTIVVEGHELHDEDIR	17	Unmodified	_TGTIVVEGHELHDEDIR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	480.741894	1918.93847	0.72072	0.00034648	1.3554	0.00065158	2.0761	0.00099805	480.992826192825	7.3674	0.15073	7.3674	7.3319	7.4826	0	675	25	0.871889544407995	0.0162751600009597	0.871889544407995	703.448603560015	0	13.1309506448601						314	18	5	NaN	NaN	NaN	0.005148	1	30034	42.941	40.804	1	113830			18889	1036	15941	16407	18889	18889		
TGTIVVEGHELHDEDIR	17	Unmodified	_TGTIVVEGHELHDEDIR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	640.653433	1918.93847	1.8119	0.0011608	0.45411	0.00029093	2.266	0.0014517	640.988112298185	7.3762	0.17734	7.3762	7.3319	7.5092	0	591	46	0.928742107665821	0.0303997669355048	0.928742107665821	561.990453924194	0	18.3951806193129						548	21	5	NaN	NaN	NaN	4.0932E-14	1	30035	170.22	159.25	1	307130			18890	1036	15941	16407	18890	18890		
TGTLTENNMEFK	12	Unmodified	_TGTLTENNMEFK_			0	0	0	P98196	P98196	P98196	ATP11A	Probable phospholipid-transporting ATPase IH	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.824292	1383.63403	1.3777	0.00095449	3.5689	0.0024726	4.9466	0.0034271	692.826067213239	7.4915	0.071016	7.4915	7.456	7.527	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	405.13899705969	0	10.6048697987718						195	9	3	NaN	NaN	NaN	0.056707	1	14936	45.939	34.584	1	53305			18891	1493	15942	16408	18891	18891		
TGTLVEEAFWIDK	13	Unmodified	_TGTLVEEAFWIDK_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.885207	1507.75586	0.51292	0.00038719	-4.6603	-0.003518	-4.1474	-0.0031308	755.38058681553	15.943	0.23055	15.943	15.845	16.076	0	480	70	1.00353128488872	0.0463301120390063	1.00353128488872	405.623862362342	0	18.726470486693						559	27	4	NaN	NaN	NaN	1.475E-05	1	18728	94.66	81.485	1	143050			18892	3269	15943	16409	18892	18892		
TGTQEVGGQDPGEAVQPCR	19	Unmodified	_TGTQEVGGQDPGEAVQPCR_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.45271	1984.89087	2.3131	0.002298	-1.2263	-0.0012183	1.0868	0.0010797	993.451046055176	5.4164	0.079789	5.4164	5.3632	5.443	0	303	28	1.12200181823275	0.0179996405017726	1.12200181823275	452.516185935166	0	7.2594612020286						160	10	3	NaN	NaN	NaN	7.0701E-07	1	31359	66.509	56.598	1	28278			18893	3137	15944	16410	18893	18893		
TGTSCALDCGAGIGR	15	Unmodified	_TGTSCALDCGAGIGR_			0	0	0	Q9BV86	Q9BV86	Q9BV86	NTMT1	N-terminal Xaa-Pro-Lys N-methyltransferase 1;N-terminal Xaa-Pro-Lys N-methyltransferase 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.335032	1494.65551	1.4793	0.001107	-0.063309	-4.7376E-05	1.416	0.0010596	748.334702174349	6.2057	0.070919	6.2057	6.1702	6.2411	0	495	43	0.993446994398923	0.0282418742669083	0.993446994398923	401.579822665409	0	11.4161771325362						252	9	4	NaN	NaN	NaN	0.00020024	1	18364	73.655	56.185	1	68299			18894	2760	15945	16411	18894	18894		
TGTVSLEVR	9	Unmodified	_TGTVSLEVR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.269281	960.52401	1.0382	0.00049964	-0.31253	-0.00015041	0.72565	0.00034923	481.269340304691	6.0461	0.29269	6.0461	5.9396	6.2323	0	696	46	0.857641857947968	0.0305519708780012	0.857641857947968	348.446340286469	0	12.4127831941992						438	34	3	NaN	NaN	NaN	0.0001244	1	3457	94.806	76.403	1	210060			18895	1127	15946	16412	18895	18895		
TGVAGEDMQDNSGTYGK	17	Unmodified	_TGVAGEDMQDNSGTYGK_			0	0	0	Q05655	Q05655	Q05655	PRKCD	Protein kinase C delta type;Protein kinase C delta type regulatory subunit;Protein kinase C delta type catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.370323	1728.72609	2.7853	0.0024103	-0.68073	-0.00058909	2.1046	0.0018212	865.368896490085	4.8933	0.044331	4.8933	4.8755	4.9199	0	372	25	1.07593298845566	0.0160493451484018	1.07593298845566	434.382337533165	0	6.47954113893837						88	6	3	NaN	NaN	NaN	2.2726E-05	1	25283	93.649	81.97	1	14965			18896	1553	15947	16413	18896	18896		
TGVCICFYQHK	11	Unmodified	_TGVCICFYQHK_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.553168	1411.63768	-1.027	-0.00048427	-1.6317	-0.00076943	-2.6586	-0.0012537	471.552690268023	8.2898	0.23066	8.2898	8.2454	8.4761	0	843	28	0.757518876820989	0.0184514415745468	0.757518876820989	459.560905411375	0	11.1938612430745						408	27	4	NaN	NaN	NaN	0.00020519	1	15799	74.486	71.141	1	125170			18897	3011	15948	16414	18897	18897		
TGVHHYSGNNIELGTACGK	19	Unmodified	_TGVHHYSGNNIELGTACGK_			0	0	0	P62888	P62888	P62888	RPL30	60S ribosomal protein L30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.97361	2013.93267	3.1442	0.0031693	-2.1781	-0.0021954	0.96616	0.00097387	1008.47325722303	4.3347	0.070941	4.3347	4.3169	4.3879	0	228	58	1.17191150690002	0.0378844489628292	1.17191150690002	472.598003396393	0	15.2777021423453						289	9	4	NaN	NaN	NaN	0.0015949	1	31866	21.376	18.829	1	53499			18898	1411	15949	16415	18898	18898		
TGVHHYSGNNIELGTACGK	19	Unmodified	_TGVHHYSGNNIELGTACGK_			0	0	0	P62888	P62888	P62888	RPL30	60S ribosomal protein L30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.318167	2013.93267	1.5066	0.0010129	0.68262	0.00045893	2.1892	0.0014718	672.653074876008	4.3347	0.1862	4.3347	4.2992	4.4854	0	678	49	0.869855008346864	0.03255936673099	0.869855008346864	526.17922450148	0	19.695308036831						676	22	5	NaN	NaN	NaN	1.8071E-07	1	31867	86.729	77.467	1	260490			18899	1411	15949	16415	18899	18899		
TGVIEHEHPVNK	12	Unmodified	_TGVIEHEHPVNK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.905364	1358.69426	-0.56031	-0.00025433	1.5372	0.00069774	0.97689	0.00044342	453.905914729255	2.1	0.2128	2.1	2.0734	2.2862	0	807	28	0.782101955086014	0.0184231892400387	0.782101955086014	474.65367757906	0	11.180939350238						258	25	3	NaN	NaN	NaN	8.1837E-05	1	14156	92.732	80.136	1	49210			18900	1489	15950	16416	18900	18900		
TGVVPQLVK	9	Unmodified	_TGVVPQLVK_			0	0	0	P52292	P52292	P52292	KPNA2	Importin subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	470.794935	939.575317	-0.96279	-0.00045328	-0.73293	-0.00034506	-1.6957	-0.00079834	470.7945812665	8.4406	0.24834	8.4406	8.3076	8.5559	0	765	40	0.810730346695089	0.0265557785134225	0.810730346695089	329.490543912577	0	10.7925871309469						388	29	3	NaN	NaN	NaN	0.052595	1	3062	43.734	37.986	1	98897			18901	1207	15951	16417	18901	18901		
TGYAFVDCPDESWALK	16	Unmodified	_TGYAFVDCPDESWALK_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.919452	1857.82435	2.0003	0.0018601	1.0389	0.00096606	3.0392	0.0028262	930.42210184914	14.347	0.15073	14.347	14.267	14.418	0	261	67	1.14997238118939	0.0439416658327225	1.14997238118939	464.017247956688	0	17.7305917810337						657	18	5	NaN	NaN	NaN	4.9973E-07	1	28642	95.656	89.628	1	240730			18902	78	15952	16418	18902	18902		
TGYESGEYEMLGEGLGVK	18	Unmodified	_TGYESGEYEMLGEGLGVK_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.940581	1917.86661	2.1863	0.0020988	5.7416	0.0055116	7.9279	0.0076103	960.949659973875	13.469	0.23057	13.469	13.38	13.611	0	246	61	1.1599488233373	0.0399085295347643	1.1599488233373	467.93414192528	0	16.0994719315469						862	27	5	NaN	NaN	NaN	5.6974E-06	1	30012	85.081	83.606	1	180050			18903	1684	15953	16419	18903	18903		
TGYTLDVTTGQR	12	Unmodified	_TGYTLDVTTGQR_			0	0	0	O43390;O60506	O43390;O60506	O60506	HNRNPR;SYNCRIP	Heterogeneous nuclear ribonucleoprotein R;Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.330598	1310.64664	1.4642	0.00096101	1.7994	0.001181	3.2636	0.002142	656.331959690611	7.5181	0.39023	7.5181	7.4028	7.7931	0	555	82	0.953040030838688	0.0545909511929964	0.953040030838688	385.741953312035	0	22.0956302620542						1099	45	5	NaN	NaN	NaN	2.4471E-23	1	12674	203.97	173.41	1	1211700			18904	263;196	15954	16420	18904	18904		
THAVLVALK	9	Unmodified	_THAVLVALK_			0	0	0	P25786	P25786	P25786	PSMA1	Proteasome subunit alpha type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.302927	950.591301	1.406	0.00066967	0.5228	0.00024901	1.9288	0.00091868	476.303170996639	5.6381	0.21286	5.6381	5.5937	5.8066	0	654	37	0.886123392477847	0.0243924210858615	0.886123392477847	360.071010463591	0	9.9117163395041						402	25	4	NaN	NaN	NaN	4.8516E-05	1	3266	117.39	88.286	1	193820			18905	841	15955	16421	18905	18905		
THEAEIVEGENHTYCIR	17	Unmodified	_THEAEIVEGENHTYCIR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.4709	2056.92725	2.49	0.0025634	-1.1472	-0.001181	1.3428	0.0013823	1029.97102450678	6.1081	0.070945	6.1081	6.0904	6.1614	0	138	43	1.23157729878518	0.0277867742236872	1.23157729878518	496.588411379446	0	11.2039983870368						263	9	4	NaN	NaN	NaN	0.00016483	1	32651	61.042	56.225	1	53906			18906	792	15956	16422	18906	18906		
THEAEIVEGENHTYCIR	17	Unmodified	_THEAEIVEGENHTYCIR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.649694	2056.92725	2.1203	0.0014559	0.18004	0.00012363	2.3003	0.0015795	686.984178053847	6.117	0.15075	6.117	6.0727	6.2234	0	504	43	0.987393073566096	0.0282614045260448	0.987393073566096	597.193141779392	0	17.0930072448773						280	18	2	NaN	NaN	NaN	7.8212E-07	1	32652	119.79	114.7	1	240230			18907	792	15956	16422	18907	18907		
THEAQIQEMR	10	Unmodified	_THEAQIQEMR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.868033	1241.58227	-0.020885	-8.6645E-06	-0.23576	-9.7811E-05	-0.25665	-0.00010648	414.867893464711	2.9868	0.1064	2.9868	2.9602	3.0666	0	885	25	0.728786607772777	0.0164321808201215	0.728786607772777	442.716134239236	0	9.98205989547012						171	13	3	NaN	NaN	NaN	0.0058803	1	10661	74.269	62.202	1	37201			18908	972	15957	16423	18908	18908		
THEAQIQEMR	10	Unmodified	_THEAQIQEMR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.798411	1241.58227	2.1672	0.0013475	-1.212	-0.00075361	0.95518	0.00059393	621.798135902183	2.9779	0.20395	2.9779	2.9513	3.1552	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	361.334339339771	0	8.22754375413905						395	24	4	NaN	NaN	NaN	2.1532E-08	1	10662	83.438	66.98	1	108490			18909	972	15957	16423	18909	18909		
THEDIEAQIR	10	Unmodified	_THEDIEAQIR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.304384	1210.59421	2.2279	0.0013508	-0.64834	-0.00039309	1.5796	0.0009577	606.303968113102	4.3435	0.22166	4.3435	4.2726	4.4943	0	573	40	0.940896116921038	0.0263209282177764	0.940896116921038	381.154867257329	0	10.6625478844209						407	26	4	NaN	NaN	NaN	0.020454	1	9747	47.561	38.047	1	161900			18910	343	15958	16424	18910	18910		
THFFLNAGNLCNLNYGEGPK	20	Unmodified	_THFFLNAGNLCNLNYGEGPK_			0	0	0	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	756.028505	2265.06369	0.3052	0.00023074	1.2964	0.00098011	1.6016	0.0012109	756.36348060429	13.416	0.062069	13.416	13.389	13.451	0	591	34	0.928742107665821	0.0222931596374992	0.928742107665821	561.374072000466	0	13.4750020486446						222	8	4	NaN	NaN	NaN	6.0092E-08	1	35324	127.62	122.79	1	45874			18911	3421	15959	16425	18911	18911		
THFLMPFPVNYVGECIR	17	Unmodified	_THFLMPFPVNYVGECIR_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.009617	2079.00702	-0.68087	-0.00047253	-0.95177	-0.00066054	-1.6326	-0.0011331	694.343336689393	16.51	0.14186	16.51	16.466	16.608	0	627	25	0.90440375274676	0.0162390708699242	0.90440375274676	546.960792099909	0	9.82098431038605						229	17	3	NaN	NaN	NaN	0.022916	1	33007	14.393	13.918	1	40935			18912	1966	15960	16426	18912	18912		
THHNDTELIR	10	Unmodified	_THHNDTELIR_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.542426	1234.60545	-0.51054	-0.00021062	1.3593	0.00056078	0.8488	0.00035017	412.542962958911	2.2774	0.15073	2.2774	2.2508	2.4015	0	831	22	0.76571780291124	0.0143431242639176	0.76571780291124	465.179585224852	0	8.71356075377957						116	18	3	NaN	NaN	NaN	0.0019363	1	10455	78.932	67.572	1	22017			18913	1155	15961	16427	18913	18913		
THIDTVINALK	11	Unmodified	_THIDTVINALK_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.85097	1223.68739	1.2823	0.00078584	0.51997	0.00031866	1.8022	0.0011045	612.851588671393	9.6204	0.14188	9.6204	9.576	9.7179	0	537	34	0.965173861991602	0.0222376640579702	0.965173861991602	390.9425640039	0	9.00734027995873						282	17	4	NaN	NaN	NaN	4.8648E-08	1	10130	133.76	97.546	1	101910			18914	452	15962	16428	18914	18914		
THIDVIHYR	9	Unmodified	_THIDVIHYR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	385.208607	1152.60399	-0.77437	-0.00029829	-0.16036	-6.1771E-05	-0.93472	-0.00036006	385.208522625305	4.9021	0.28373	4.9021	4.8401	5.1238	0	849	31	0.753417699604308	0.0205087467208043	0.753417699604308	458.066475096774	0	12.4690053392497						363	33	4	NaN	NaN	NaN	0.00062381	1	8134	101.41	88.585	1	181540			18915	950	15963	16429	18915	18915		
THIDVIHYR	9	Unmodified	_THIDVIHYR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.309272	1152.60399	1.6449	0.00094964	-0.80909	-0.0004671	0.83585	0.00048254	577.308661193177	4.9021	0.10641	4.9021	4.8667	4.9731	0	576	25	0.938871150116794	0.0161986138950868	0.938871150116794	380.550161916778	0	6.56574135847694						138	13	2	NaN	NaN	NaN	8.1876E-06	1	8136	121.67	108.84	1	49446			18916	950	15963	16429	18916	18916		
THIETVINALK	11	Unmodified	_THIETVINALK_			0	0	0	O94973	O94973	O94973	AP2A2	AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.858795	1237.70304	1.2892	0.00079911	-1.0079	-0.00062474	0.2813	0.00017437	619.859292675219	9.6381	0.09754	9.6381	9.6026	9.7002	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	397.439076931825	0	8.17783467073531						185	12	3	NaN	NaN	NaN	5.6131E-05	1	10560	68.49	59.513	1	42228			18917	399	15964	16430	18917	18917		
THILLFLPK	9	Unmodified	_THILLFLPK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.342052	1080.66955	1.0434	0.00056485	0.27612	0.00014948	1.3195	0.00071433	541.342353277641	12.387	0.29259	12.387	12.325	12.618	0	603	58	0.920633820089869	0.0385330681003847	0.920633820089869	373.451592106917	0	15.6307918705921						922	34	5	NaN	NaN	NaN	0.00033709	1	6231	109.36	88.082	1	937750			18918	554	15965	16431	18918	18918		
THINIVVIGHVDSGK	15	Unmodified	_THINIVVIGHVDSGK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.298373	1587.87329	-0.62784	-0.00033294	-2.5105	-0.0013313	-3.1384	-0.0016643	530.296807688496	13.779	0.1862	13.779	13.726	13.912	0	711	16	0.847456455381371	0.0101896485259549	0.847456455381371	513.569725301472	0	6.17506063133141						137	22	2	NaN	NaN	NaN	0.056108	1	21213	22.395	18.412	1	42564			18919	1446	15966	16432	18919	18919		
THINIVVIGHVDSGK	15	Unmodified	_THINIVVIGHVDSGK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.298373	1587.87329	0.14852	7.8762E-05	-1.2055	-0.00063928	-1.057	-0.00056052	530.29791390318	8.7778	0.50579	8.7778	8.4495	8.9553	0	696	55	0.857641857947968	0.036644552172756	0.857641857947968	519.742206957441	0	22.2070789138077						599	58	3	NaN	NaN	NaN	0.038346	1	21214	37.146	35.772	1	198520			18920	1446	15966	16432	18920	18920		
THINIVVIGHVDSGK	15	Unmodified	_THINIVVIGHVDSGK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.298373	1587.87329	0.55975	0.00029684	-0.42372	-0.0002247	0.13604	7.2141E-05	530.298070776743	8.1656	0.479	8.1656	8.0237	8.5027	0	702	43	0.853568545818287	0.0285171523419938	0.853568545818287	517.273722919411	0	17.2817679743127						805	55	5	NaN	NaN	NaN	4.8678E-05	1	21215	69.201	64.107	1	644360			18921	1446	15966	16432	18921	18921		
THINIVVIGHVDSGK	15	Unmodified	_THINIVVIGHVDSGK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.298373	1587.87329	1.0124	0.00053688	0.5602	0.00029707	1.5726	0.00083395	530.298607481959	7.9704	0.24841	7.9704	7.8906	8.139	0	693	55	0.85967808974117	0.0366394639132938	0.85967808974117	520.976182153984	0	22.2039950226758						1276	29	6	NaN	NaN	NaN	2.7744E-08	1	21216	126.63	118.66	1	2886800			18922	1446	15966	16432	18922	18922		
THINIVVIGHVDSGK	15	Unmodified	_THINIVVIGHVDSGK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.943921	1587.87329	3.2957	0.0026199	-0.87398	-0.00069476	2.4217	0.0019251	794.943565792703	7.9704	0.4968	7.9704	7.8995	8.3963	0	342	70	1.09598084995137	0.0461005749641328	1.09598084995137	442.78826583587	0	18.6251371484372						1516	57	5	NaN	NaN	NaN	4.335E-08	1	21219	153.05	141.57	1	1148700			18923	1446	15966	16432	18923	18923		
THINIVVIGHVDSGK	15	Unmodified	_THINIVVIGHVDSGK_			0	0	0	P68104;Q5VTE0;Q05639	P68104	P68104	EEF1A1;EEF1A1P5;EEF1A2	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.298373	1587.87329	-0.083904	-4.4494E-05	5.1936	0.0027542	5.1097	0.0027097	530.300388259953	12.689	0.39016	12.689	12.538	12.928	0	705	43	0.851531465363931	0.0285131915088889	0.851531465363931	516.039200392795	0	17.2793668177666						246	45	2	NaN	NaN	NaN	0.0030672	1	21220	39.166	35.878	1	102170			18924	1446	15966	16432	18924	18924		
THIQDNHDGTYTVAYVPDVTGR	22	Unmodified	_THIQDNHDGTYTVAYVPDVTGR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.391048	2458.15132	1.2243	0.0010044	0.64558	0.00052963	1.8699	0.001534	820.72577857582	8.9908	0.097551	8.9908	8.9375	9.0351	0	531	67	0.969216233931596	0.0444968965895804	0.969216233931596	585.558042048483	0	26.8830780294869						494	12	4	NaN	NaN	NaN	3.121E-06	1	36613	62.304	58.863	1	105780			18925	792	15967	16433	18925	18925		
THLGLIMDGWNSMIR	15	Unmodified	_THLGLIMDGWNSMIR_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.960487	1742.85963	-1.7675	-0.0010286	-0.67298	-0.00039165	-2.4405	-0.0014203	581.960045192861	15.987	0.088663	15.987	15.952	16.041	0	735	43	0.831145085810763	0.0285647467837629	0.831145085810763	503.297806974083	0	17.2973102512105						291	11	4	NaN	NaN	NaN	2.3687E-06	1	25679	124.46	119.64	1	60397			18926	3043	15968	16434	18926	18926		
THLMSEEEWR	10	Unmodified	_THLMSEEEWR_			0	0	0	P33552	P33552	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.298244	1316.58194	1.5894	0.0010479	0.23807	0.00015696	1.8274	0.0012048	659.299725958545	6.1879	0.15964	6.1879	6.117	6.2767	0	549	43	0.957085760909907	0.0283122781138182	0.957085760909907	387.361247115095	0	11.4588261645557						446	19	5	NaN	NaN	NaN	0.0043715	1	12862	63.397	60.052	1	143370			18927	948	15969	16435	18927	18927		
THLMSESEWR	10	Unmodified	_THLMSESEWR_			0	0	0	P61024	P61024	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.292962	1274.57137	1.818	0.0011604	1.9001	0.0012128	3.7181	0.0023732	638.294138831744	5.7889	0.12412	5.7889	5.7534	5.8775	0	552	52	0.955063035883597	0.0343863373068095	0.955063035883597	386.674872388349	0	13.921942416829						349	15	4	NaN	NaN	NaN	0.0096326	1	11609	44.82	44.257	1	146850			18928	1324	15970	16436	18928	18928		
THLPGFVEQAEALK	14	Unmodified	_THLPGFVEQAEALK_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	513.943707	1538.80929	-0.21003	-0.00010794	-0.70697	-0.00036334	-0.917	-0.00047129	513.943466243882	11.252	0.24828	11.252	11.075	11.323	0	720	55	0.841341816837976	0.0366903942438199	0.841341816837976	510.004523389712	0	22.2409806036107						657	29	4	NaN	NaN	NaN	0.0015614	1	19698	71.066	62.592	1	163990			18929	895	15971	16437	18929	18929		
THLPGFVEQAEALK	14	Unmodified	_THLPGFVEQAEALK_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.411923	1538.80929	2.1706	0.0016723	-0.34671	-0.00026711	1.8239	0.0014052	770.411632632282	11.252	0.27491	11.252	11.083	11.358	0	381	46	1.06991323971056	0.030107052507665	1.06991323971056	432.375808830777	0	12.1669315757171						817	32	4	NaN	NaN	NaN	0.07189	1	19700	30.068	21.091	1	320210			18930	895	15971	16437	18930	18930		
THLSLSHNPEQK	12	Unmodified	_THLSLSHNPEQK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.240635	1389.70008	0.015348	7.1253E-06	0.78201	0.00036304	0.79736	0.00037017	464.24094682697	2.7651	0.23057	2.7651	2.6941	2.9247	0	813	25	0.778007628350577	0.0163795890035051	0.778007628350577	472.062898123663	0	9.93845815041919						315	27	4	NaN	NaN	NaN	0.00012792	1	15143	83.775	81.104	1	70544			18931	656	15972	16438	18931	18931		
THLSLSHNPEQK	12	Unmodified	_THLSLSHNPEQK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.857315	1389.70008	2.5878	0.0018007	-0.78852	-0.0005487	1.7993	0.001252	695.8566785237	2.7474	0.070949	2.7474	2.7296	2.8006	0	480	16	1.00353128488872	0.0100801102061459	1.00353128488872	405.937128839785	0	4.07749220885046						59	9	2	NaN	NaN	NaN	0.0055462	1	15145	51.454	38.18	1	10237			18932	656	15972	16438	18932	18932		
THLTELQR	8	Unmodified	_THLTELQR_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.274898	996.535243	1.124	0.00056117	0.36426	0.00018186	1.4882	0.00074303	499.275304573788	3.173	0.17735	3.173	3.1109	3.2883	0	693	46	0.85967808974117	0.0305265242845556	0.85967808974117	349.095468612323	0	12.3961182998521						238	21	2	NaN	NaN	NaN	0.050075	1	4215	34.931	20.396	1	58545			18933	1526	15973	16439	18933	18933		
THMVVANTMEDFQK	14	Unmodified	_THMVVANTMEDFQK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.925331	1649.75416	-0.34467	-0.00018989	1.3597	0.00074912	1.0151	0.00055923	550.926259758455	8.077	0.097625	8.077	8.0237	8.1213	0	723	37	0.839303037468863	0.0244704573832687	0.839303037468863	508.463841733181	0	14.8246130594118						254	12	4	NaN	NaN	NaN	0.0026377	1	23017	50.09	42.532	1	73690			18934	565	15974	16440	18934	18934		
THNDIIHNENMR	12	Unmodified	_THNDIIHNENMR_			0	0	0	P15311	P15311	P15311	EZR	Ezrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.568646	1492.68411	0.51281	0.00025567	1.0114	0.00050426	1.5242	0.00075993	498.569250354117	3.0666	0.13298	3.0666	3.0311	3.1641	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	499.012772000389	0	12.3766882686833						295	16	4	NaN	NaN	NaN	0.0018879	1	18316	69.276	56.68	1	75312			18935	710	15975	16441	18935	18935		
THNGESVSYLFSHVPL	16	Unmodified	_THNGESVSYLFSHVPL_			0	0	0	P60891;P21108;P11908	P60891;P11908	P60891	PRPS1;PRPS1L1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.296809	1785.8686	-1.6101	-0.00096012	-0.22993	-0.00013711	-1.8401	-0.0010972	596.296836225418	15.127	0.10643	15.127	15.083	15.189	0	759	25	0.814815566123307	0.0163363337922245	0.814815566123307	493.315829049303	0	9.89054748509534						194	13	4	NaN	NaN	NaN	0.00077005	1	26849	64.266	62.897	1	46732			18936	1313;660	15976	16442	18936	18936		
THNSSLEYNIFEGMECR	17	Unmodified	_THNSSLEYNIFEGMECR_			0	0	0	Q16555	Q16555	Q16555	DPYSL2	Dihydropyrimidinase-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.303418	2085.88842	-0.26975	-0.00018783	-0.86884	-0.00060498	-1.1386	-0.0007928	696.63680085748	12.999	0.079802	12.999	12.963	13.043	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	530.975684514053	0	11.0690775778021						246	10	5	NaN	NaN	NaN	9.8152E-05	1	33111	58.508	57.14	1	61674			18937	1889	15977	16443	18937	18937		
THNTLYAPEMLAK	13	Unmodified	_THNTLYAPEMLAK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.879401	1487.74425	2.3633	0.0017604	-0.49762	-0.00037067	1.8657	0.0013897	744.878916632962	8.2454	0.11535	8.2454	8.2011	8.3164	0	345	52	1.09397730668811	0.034074328312536	1.09397730668811	442.235911686241	0	13.7744097197134						392	14	3	NaN	NaN	NaN	0.00020561	1	18170	84.309	74.567	1	84745			18938	2947	15978	16444	18938	18938		
THPVHPELVSGTFLCLDCQTVIR	23	Unmodified	_THPVHPELVSGTFLCLDCQTVIR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	670.589996	2678.33088	1.4889	0.00099843	2.8983	0.0019436	4.3872	0.002942	670.841500646063	13.85	0.088654	13.85	13.806	13.895	0	480	16	1.00353128488872	0.0100801102061459	1.00353128488872	808.011069533022	0	8.11618008459175						132	11	4	NaN	NaN	NaN	0.052966	1	37539	19.51	19.396	1	26400			18939	1757	15979	16445	18939	18939		
THQALGILSK	10	Unmodified	_THQALGILSK_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	534.314023	1066.61349	1.013	0.00054124	-0.43843	-0.00023426	0.57453	0.00030698	534.313511733726	5.5228	0.12408	5.5228	5.4697	5.5937	0	621	37	0.908462957275599	0.0243586086467772	0.908462957275599	368.575653175241	0	9.88261548863829						203	15	3	NaN	NaN	NaN	0.016598	1	5887	57.293	47.214	1	51067			18940	1042	15980	16446	18940	18940		
THTDTESEASILGDSGEYK	19	Unmodified	_THTDTESEASILGDSGEYK_			0	0	0	Q9Y3E5	Q9Y3E5	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.45564	2038.89672	2.136	0.0021797	-0.40697	-0.00041529	1.7291	0.0017644	1020.95616718468	7.4649	0.070958	7.4649	7.4383	7.5092	0	219	40	1.17788915118882	0.0258995717918544	1.17788915118882	474.968791109542	0	10.4436723029635						230	9	3	NaN	NaN	NaN	0.002074	1	32320	35.246	34.811	1	51938			18941	3393	15981	16447	18941	18941		
THTQDAVPLTLGQEFSGYVQQVK	23	Unmodified	_THTQDAVPLTLGQEFSGYVQQVK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	849.434365	2545.28127	1.4601	0.0012402	0.01526	1.2962E-05	1.4753	0.0012532	849.768736118183	15.464	0.17749	15.464	15.411	15.588	0	492	82	0.995464410099171	0.0544702712697026	0.995464410099171	601.300322940149	0	32.9022226940758						1478	21	6	NaN	NaN	NaN	2.1653E-52	1	37009	300.05	295.68	1	768300			18942	571	15982	16448	18942	18942		
THTQGQAFSLSVFHHWQIVPGDPLDK	26	Unmodified	_THTQGQAFSLSVFHHWQIVPGDPLDK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	737.122783	2944.46203	0.43712	0.00032221	1.0316	0.00076042	1.4687	0.0010826	737.374701086751	15.074	0.070924	15.074	15.038	15.109	0	522	31	0.975277694896658	0.0202034745303079	0.975277694896658	784.89582789396	0	16.2595976005387						204	9	5	NaN	NaN	NaN	3.5518E-06	1	38139	41.261	40.42	1	40499			18943	1796	15983	16449	18943	18943		
THVADFAPEVAWVTR	15	Unmodified	_THVADFAPEVAWVTR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	566.958128	1697.85255	-1.2807	-0.00072612	-1.124	-0.00063726	-2.4047	-0.0013634	567.291715981734	13.496	0.15963	13.496	13.416	13.575	0	789	64	0.794378096728713	0.042915717750498	0.794378096728713	481.134146942649	0	25.9929337620809						606	19	4	NaN	NaN	NaN	9.0639E-07	1	24436	117.21	113.23	1	168720			18944	565	15984	16450	18944	18944		
THVDSHGHNVFK	12	Unmodified	_THVDSHGHNVFK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	459.893459	1376.65855	-0.89798	-0.00041297	1.2811	0.00058918	0.38314	0.0001762	459.894185957278	1.9935	0.12424	1.9935	1.9758	2.1	0	864	16	0.743159753061487	0.0102622379494217	0.743159753061487	450.960663782256	0	6.22728238241905						90	15	2	NaN	NaN	NaN	0.0011056	1	14697	71.066	55.186	1	19418			18945	1144	15985	16451	18945	18945		
THYIVGYNLPSYEYLYNLGDQYALK	25	Unmodified	_THYIVGYNLPSYEYLYNLGDQYALK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	999.827152	2996.45963	1.3384	0.0013381	0.51158	0.00051149	1.85	0.0018496	1000.16174139972	17.956	0.079791	17.956	17.92	18	0	339	52	1.09798411722691	0.0340696336086099	1.09798411722691	662.683727452987	0	20.5625850488011						423	10	5	NaN	NaN	NaN	3.2824E-07	1	38220	78.925	76.139	1	97885			18946	518	15986	16452	18946	18946		
THYQADIER	9	Unmodified	_THYQADIER_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.772719	1131.53089	1.549	0.0008779	1.3483	0.00076419	2.8973	0.0016421	566.77364716353	2.8715	0.13302	2.8715	2.8449	2.9779	0	621	49	0.908462957275599	0.0324871583843739	0.908462957275599	368.305946412781	0	13.1708326896469						232	16	2	NaN	NaN	NaN	0.063655	1	7571	39.324	26.497	1	59388			18947	443	15987	16453	18947	18947		
THYSNIEANESEEVR	15	Unmodified	_THYSNIEANESEEVR_			0	0	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.403012	1776.79147	3.7909	0.0033716	-2.8586	-0.0025425	0.93225	0.00082914	889.400502173111	4.3879	0.097529	4.3879	4.3524	4.4499	0	357	94	1.08596037261705	0.0621270284694069	1.08596037261705	438.336303840081	0	25.0769113814162						583	12	4	NaN	NaN	NaN	1.1788E-06	1	26585	86.729	82.993	1	142120			18948	515	15988	16454	18948	18948		
THYSNIEANESEEVR	15	Unmodified	_THYSNIEANESEEVR_			0	0	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.2711	1776.79147	1.1023	0.00065399	1.2144	0.0007205	2.3168	0.0013745	593.271685963985	4.3879	0.12413	4.3879	4.3524	4.4765	0	708	103	0.849494101904619	0.0691791241524355	0.849494101904619	514.331556741405	0	41.8849366223429						448	15	5	NaN	NaN	NaN	2.1726E-08	1	26586	145.08	143.09	1	146940			18949	515	15988	16454	18949	18949		
TIAALLPCLLDK	12	Unmodified	_TIAALLPCLLDK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.386331	1326.75811	0.31236	0.00020753	-1.0809	-0.00071816	-0.76858	-0.00051063	664.385748956579	17.592	0.15959	17.592	17.53	17.69	0	552	91	0.955063035883597	0.0606020975624142	0.955063035883597	386.511802713574	0	24.5255287839738						559	19	2	NaN	NaN	NaN	0.00032114	1	13196	76.85	73.114	1	147730			18950	2013	15989	16455	18950	18950		
TIADLELHYQEFIR	14	Unmodified	_TIADLELHYQEFIR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.305305	1746.89408	0.24138	0.0001408	0.49556	0.00028906	0.73694	0.00042986	583.30558100282	14.959	0.17735	14.959	14.914	15.092	0	594	40	0.926715457081489	0.0263537653577723	0.926715457081489	561.159982841478	0	15.9581653710082						370	21	4	NaN	NaN	NaN	0.0012069	1	25807	60	53.253	1	86024			18951	718	15990	16456	18951	18951		
TIADLELHYQEFIR	14	Unmodified	_TIADLELHYQEFIR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.454319	1746.89408	1.6818	0.0014707	1.7168	0.0015012	3.3986	0.0029719	874.456140736251	14.959	0.20396	14.959	14.914	15.118	0	237	49	1.16593139812432	0.0319048822592995	1.16593139812432	470.678099902383	0	12.8797709570002						408	24	3	NaN	NaN	NaN	2.9867E-08	1	25808	97.175	88.369	1	95476			18952	718	15990	16456	18952	18952		
TIADLELHYQEFIR	14	Unmodified	_TIADLELHYQEFIR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.454319	1746.89408	2.2946	0.0020065	3.961	0.0034637	6.2555	0.0054702	874.457194644463	14.586	0.18622	14.586	14.48	14.666	0	291	94	1.12999890578964	0.0620073607877274	1.12999890578964	456.172403724372	0	25.0319240790554						696	22	4	NaN	NaN	NaN	0.046989	1	25809	16.288	7.9131	1	164620			18953	718	15990	16456	18953	18953		
TIADSLINSFLK	12	Unmodified	_TIADSLINSFLK_			0	0	0	Q15058	Q15058	Q15058	KIF14	Kinesin-like protein KIF14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.371735	1320.72892	0.00014022	9.2736E-08	-0.16685	-0.00011035	-0.16671	-0.00011026	661.371554328028	19.011	0.070919	19.011	18.976	19.046	0	537	28	0.965173861991602	0.0181919339867516	0.965173861991602	390.622006494118	0	7.36257998248129						144	9	3	NaN	NaN	NaN	0.0010576	1	13012	58.889	44.895	1	35304			18954	1805	15991	16457	18954	18954		
TIAECLADELINAAK	15	Unmodified	_TIAECLADELINAAK_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	544.615151	1630.82362	-1.4624	-0.00079646	0.89054	0.000485	-0.57188	-0.00031146	544.615603132917	18.789	0.088688	18.789	18.754	18.843	0	714	28	0.845418525735192	0.0183439172239627	0.845418525735192	512.218158981859	0	11.1141253981899						198	11	4	NaN	NaN	NaN	6.3557E-06	1	22518	106	91.548	1	58593			18955	1090	15992	16458	18955	18955		
TIAECLADELINAAK	15	Unmodified	_TIAECLADELINAAK_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.419088	1630.82362	1.8625	0.0015205	0.23608	0.00019274	2.0985	0.0017133	816.419805041371	18.789	0.31921	18.789	18.683	19.002	0	297	148	1.12600091227925	0.0981603759102774	1.12600091227925	454.813088563198	0	39.6488344329208						2896	37	6	NaN	NaN	NaN	4.3853E-33	1	22520	273.75	243.4	1	3466900			18956	1090	15992	16458	18956	18956		
TIAFAHDSTR	10	Unmodified	_TIAFAHDSTR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.783087	1117.55162	1.5928	0.00089161	1.7818	0.00099742	3.3746	0.001889	560.285410810681	3.6431	0.16845	3.6431	3.5455	3.714	0	618	28	0.910492137470517	0.018260091794093	0.910492137470517	369.184182007342	0	7.40405850303074						281	20	3	NaN	NaN	NaN	0.0084041	1	7201	47.561	40.411	1	59026			18957	1842	15993	16459	18957	18957		
TIAFLLPMFR	10	Unmodified	_TIAFLLPMFR_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.846645	1207.67874	-0.10778	-6.5193E-05	-1.3136	-0.00079453	-1.4214	-0.00085972	604.845858417183	19.57	0.14187	19.57	19.525	19.667	0	609	46	0.916577990479294	0.0304166222504839	0.916577990479294	371.313755686563	0	12.3220395432153						443	17	5	NaN	NaN	NaN	5.7842E-08	1	9684	142.36	130.3	1	202200			18958	2110	15994	16460	18958	18958		
TIAFLLPMFR	10	Oxidation (M)	_TIAFLLPM(Oxidation (M))FR_	TIAFLLPM(1)FR	TIAFLLPM(56)FR	0	1	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.844102	1223.67365	-0.074644	-4.5745E-05	-1.4818	-0.00090809	-1.5564	-0.00095383	612.843048631267	17.61	0.11526	17.61	17.539	17.654	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	372.080378466573	0	8.21404778089777						236	14	3	NaN	NaN	NaN	0.027769	1	10128	56.014	43.948	1	61090			18959	2110	15994	16461	18959	18959	587	
TIAIIAEGIPEALTR	15	Unmodified	_TIAIIAEGIPEALTR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.45633	1566.89811	1.7788	0.0013954	0.69714	0.00054688	2.4759	0.0019422	784.456781932446	16.635	0.18624	16.635	16.581	16.768	0	339	124	1.09798411722691	0.0820888831594713	1.09798411722691	443.648941565126	0	33.1686456630559						1614	22	4	NaN	NaN	NaN	4.1784E-06	1	20571	124.46	97.877	1	694330			18960	1235	15995	16462	18960	18960		
TIAMDGTEGLVR	12	Unmodified	_TIAMDGTEGLVR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.824095	1261.63364	1.0832	0.00068442	-4.1903	-0.0026475	-3.1071	-0.0019631	631.821856397377	9.106	0.13301	9.106	9.0528	9.1858	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.717400185771	0	9.82901286220527						204	16	3	NaN	NaN	NaN	0.071899	1	11267	20.336	13.196	1	56462			18961	541	15996	16463	18961	18961		
TIAMDGTEGLVR	12	Unmodified	_TIAMDGTEGLVR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.824095	1261.63364	1.1196	0.00070741	0.92279	0.00058304	2.0424	0.0012905	631.824997443964	9.3011	0.25719	9.3011	9.2213	9.4785	0	597	97	0.924688525662974	0.0647855574261417	0.924688525662974	374.418346604729	0	26.2325103233765						1499	30	5	NaN	NaN	NaN	4.0331E-11	1	11269	171.34	126.52	1	1019900			18962	541	15996	16463	18962	18962		
TIAPALVSK	9	Unmodified	_TIAPALVSK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.28166	898.548768	0.10946	4.929E-05	0.91758	0.00041317	1.027	0.00046246	450.282066946887	6.4717	0.35468	6.4717	6.3919	6.7466	8.8818E-16	759	61	0.814815566123307	0.0408408510707656	0.814815566123307	331.368677023293	0	16.6091313795262						1336	41	4	NaN	NaN	NaN	0.011712	1	2303	56.378	41.843	1	1521500			18963	544	15997	16464	18963	18963		
TIAQDYGVLK	10	Unmodified	_TIAQDYGVLK_			0	0	0	Q06830	Q06830	Q06830	PRDX1	Peroxiredoxin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.305864	1106.59717	1.3885	0.00076963	0.71501	0.00039634	2.1035	0.001166	554.306417387285	8.3963	0.23061	8.3963	8.343	8.5736	0	618	64	0.910492137470517	0.0426009931647262	0.910492137470517	369.228709422727	0	17.2758325734006						1342	27	5	NaN	NaN	NaN	0.0028752	1	6901	52.591	26.368	1	2070600			18964	1564	15998	16465	18964	18964		
TIAQGNLSNTDVQAAK	16	Unmodified	_TIAQGNLSNTDVQAAK_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.923383	1629.83221	2.5917	0.0021147	-2.9965	-0.0024449	-0.40478	-0.00033027	815.921300782683	5.9041	0.26608	5.9041	5.8687	6.1347	0	375	94	1.07392668217569	0.0621784206897633	1.07392668217569	433.781555388112	0	25.1151707896288						874	31	5	NaN	NaN	NaN	2.5284E-17	1	22482	151.08	116.88	1	449880			18965	811	15999	16466	18965	18965		
TICAILENYQTEK	13	Unmodified	_TICAILENYQTEK_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.892706	1581.77086	1.0514	0.00083259	-0.18181	-0.00014397	0.86959	0.00068862	792.394442750856	11.89	0.12416	11.89	11.846	11.97	0	408	58	1.0518390438467	0.0381671761516003	1.0518390438467	424.968665295991	0	15.4204714135203						423	15	4	NaN	NaN	NaN	2.7609E-07	1	21022	108.4	97.614	1	99047			18966	1139	16000	16467	18966	18966		
TICSHVQNMIK	11	Unmodified	_TICSHVQNMIK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.225052	1329.65333	-1.6006	-0.00071102	0.50212	0.00022305	-1.0985	-0.00048797	444.225674704967	6.3476	0.17733	6.3476	6.3121	6.4895	0	786	43	0.796423123669906	0.0286283916090748	0.796423123669906	483.451272044195	0	17.3782401949984						540	21	5	NaN	NaN	NaN	0.040058	1	13273	24.121	14.607	1	220900			18967	943	16001	16468	18967	18967		
TICSHVQNMIK	11	Unmodified	_TICSHVQNMIK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.83394	1329.65333	1.9968	0.0013296	0.132	8.7887E-05	2.1288	0.0014174	665.835158430193	6.3565	0.28374	6.3565	6.3033	6.587	0	477	76	1.0055473068722	0.0504284586117327	1.0055473068722	406.933531656757	0	20.4078223059546						1002	33	5	NaN	NaN	NaN	2.3135E-08	1	13274	121.8	100.52	1	570690			18968	943	16001	16468	18968	18968		
TIDDLEEK	8	Unmodified	_TIDDLEEK_			0	0	0	P67936	P67936	P67936	TPM4	Tropomyosin alpha-4 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.73748	961.460406	1.087	0.00052367	1.3612	0.00065575	2.4483	0.0011794	481.73815841366	4.5297	0.15959	4.5297	4.4765	4.6361	0	714	40	0.845418525735192	0.0264967721372047	0.845418525735192	343.475464912956	0	10.765071797551						459	19	3	NaN	NaN	NaN	0.0004757	1	3469	105.81	52.129	1	332520			18969	1443	16002	16469	18969	18969		
TIDGILLLIER	11	Unmodified	_TIDGILLLIER_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.384645	1254.75474	-0.046755	-2.938E-05	-1.7982	-0.0011299	-1.8449	-0.0011593	628.383355310336	19.038	0.070941	19.038	19.011	19.082	0	549	31	0.957085760909907	0.0202258527858471	0.957085760909907	387.559418926769	0	8.1901957725596						147	9	3	NaN	NaN	NaN	3.1706E-06	1	11073	117.3	106.6	1	41873			18970	1696	16003	16470	18970	18970		
TIDGQQTIIACIESHQFQPK	20	Unmodified	_TIDGQQTIIACIESHQFQPK_			0	0	0	P52907	P52907	P52907	CAPZA1	F-actin-capping protein subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.05472	2313.14233	1.6572	0.0012795	1.122	0.00086622	2.7792	0.0021457	772.389778993556	14.028	0.22167	14.028	13.939	14.161	0	390	37	1.06389100039157	0.0240939446089616	1.06389100039157	642.982790303449	0	14.5616343482416						688	26	5	NaN	NaN	NaN	6.6238E-08	1	35747	74.62	71.367	1	274270			18971	1226	16004	16471	18971	18971		
TIDLGAAAHYTGDK	14	Unmodified	_TIDLGAAAHYTGDK_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.85698	1431.69941	2.4363	0.0017465	-0.32434	-0.00023251	2.112	0.001514	716.856722851951	7.8197	0.14188	7.8197	7.7842	7.9261	0	384	31	1.06790610341098	0.0200755173877298	1.06790610341098	431.852437417053	0	8.11837397371175						303	17	4	NaN	NaN	NaN	0.00019903	1	16445	74.524	57.054	1	92985			18972	1763	16005	16472	18972	18972		
TIDNADSSTLHAVTFLR	17	Unmodified	_TIDNADSSTLHAVTFLR_			0	0	0	Q8NFH3	Q8NFH3	Q8NFH3	NUP43	Nucleoporin Nup43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.986523	1859.93774	0.54796	0.00034028	-0.59042	-0.00036664	-0.042462	-2.6369E-05	621.320428783209	11.731	0.12413	11.731	11.687	11.811	0	588	61	0.93076847747433	0.0405358392902467	0.93076847747433	563.344744569039	0	24.5341914595356						420	15	4	NaN	NaN	NaN	1.5752E-05	1	28699	77.696	58.885	1	143090			18973	2317	16006	16473	18973	18973		
TIDNADSSTLHAVTFLR	17	Unmodified	_TIDNADSSTLHAVTFLR_			0	0	0	Q8NFH3	Q8NFH3	Q8NFH3	NUP43	Nucleoporin Nup43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.976147	1859.93774	1.1686	0.0010879	1.3136	0.001223	2.4822	0.0023109	930.97741394339	11.731	0.079781	11.731	11.687	11.766	0	234	40	1.16792504164217	0.0259173708713474	1.16792504164217	471.257229802798	0	10.4576475074373						262	10	4	NaN	NaN	NaN	0.00015239	1	28700	48.892	48.216	1	69405			18974	2317	16006	16473	18974	18974		
TIDPELLGK	9	Unmodified	_TIDPELLGK_			0	0	0	P15586	P15586	P15586	GNS	N-acetylglucosamine-6-sulfatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.281857	984.549162	-0.18766	-9.257E-05	-0.41106	-0.00020277	-0.59872	-0.00029534	493.281545413135	9.1415	0.1597	9.1415	9.0706	9.2303	0	714	55	0.845418525735192	0.0366852964336388	0.845418525735192	343.36189627351	0	14.8995232129035						329	19	3	NaN	NaN	NaN	0.019542	1	3940	49.96	41.778	1	91596			18975	716	16007	16474	18975	18975		
TIEAEAAHGTVTR	13	Unmodified	_TIEAEAAHGTVTR_			0	0	0	P48735	P48735	P48735	IDH2	Isocitrate dehydrogenase [NADP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.349323	1354.68409	2.2389	0.0015188	-1.7469	-0.001185	0.49198	0.00033374	678.34866318298	3.6342	0.062074	3.6342	3.6164	3.6785	0	471	22	1.00957851518677	0.0141063059336848	1.00957851518677	408.487264476547	0	5.70757621724363						87	8	3	NaN	NaN	NaN	0.00039748	1	14039	81.799	68.525	1	15753			18976	1117	16008	16475	18976	18976		
TIEDAIAVLSVAEEAADR	18	Unmodified	_TIEDAIAVLSVAEEAADR_			0	0	0	Q96CT7	Q96CT7	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.981095	1871.94764	0.51273	0.00048042	2.768	0.0025935	3.2807	0.003074	936.984461725031	19.268	0.11528	19.268	19.233	19.348	0	231	40	1.16991841121525	0.0259173708713474	1.16991841121525	472.039126765825	0	10.4571506840966						293	14	4	NaN	NaN	NaN	1.1531E-06	1	28984	86.729	54.928	1	62572			18977	2497	16009	16476	18977	18977		
TIEDAIAVLSVAEEAADRHPER	22	Unmodified	_TIEDAIAVLSVAEEAADRHPER_			0	0	1	Q96CT7	Q96CT7	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	798.074949	2391.20302	0.71838	0.00057332	0.21772	0.00017375	0.9361	0.00074707	798.409291887221	16.36	0.17733	16.36	16.315	16.493	0	423	31	1.04178812298108	0.0201087800634321	1.04178812298108	629.501829245314	0	12.1507565258086						444	21	5	NaN	NaN	NaN	1.5158E-11	1	36307	109.16	107.54	1	133560			18978	2497	16010	16477	18978	18978		
TIEDDLVSALVR	12	Unmodified	_TIEDDLVSALVR_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.864274	1329.714	-0.10785	-7.181E-05	-0.26811	-0.00017852	-0.37595	-0.00025033	665.864782144629	17.291	0.12418	17.291	17.246	17.371	0	516	91	0.979317271586824	0.0605016247799726	0.979317271586824	396.318351044965	0	24.4843064285873						438	15	3	NaN	NaN	NaN	3.9808E-05	1	13288	79.311	38.808	1	133290			18979	3447	16011	16478	18979	18979		
TIEDLDENQLK	11	Unmodified	_TIEDLDENQLK_			0	0	0	Q9H993	Q9H993	Q9H993	ARMT1	Protein-glutamate O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.330264	1316.64598	1.5881	0.0010471	1.1934	0.00078687	2.7815	0.001834	659.331082491648	7.8285	0.14188	7.8285	7.7842	7.9261	0	489	40	0.997481546940468	0.0262300352853753	0.997481546940468	403.710422576091	0	10.616074715091						298	17	2	NaN	NaN	NaN	0.0015755	1	12875	61.48	40.392	1	92237			18980	2930	16012	16479	18980	18980		
TIEQNINNLNVSEADR	16	Unmodified	_TIEQNINNLNVSEADR_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.453036	1828.89152	2.0204	0.0018496	-1.0875	-0.00099554	0.93288	0.00085401	915.452076841269	9.576	0.070909	9.576	9.5406	9.6115	0	321	43	1.10999792833052	0.0280167950523351	1.10999792833052	447.93995472196	0	11.3061849818701						197	9	3	NaN	NaN	NaN	0.021472	1	27937	40.224	38.636	1	36239			18981	1786	16013	16480	18981	18981		
TIESILEPVAQQISHLVIMHEEGEVDGK	28	Unmodified	_TIESILEPVAQQISHLVIMHEEGEVDGK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	776.151043	3100.57507	0.5711	0.00044326	-0.059481	-4.6167E-05	0.51162	0.00039709	776.40188346138	20.031	0.044324	20.031	20.013	20.057	0	459	52	1.01763759082241	0.0342297995657299	1.01763759082241	818.792927200303	0	27.5413546400674						188	6	6	NaN	NaN	NaN	0.01111	1	38361	16.157	15.316	1	59729			18982	753	16014	16481	18982	18982		
TIEYLEEVAITFAK	14	Unmodified	_TIEYLEEVAITFAK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.934896	1625.85524	0.78895	0.00064216	1.8801	0.0015303	2.669	0.0021724	814.438005583491	19.126	0.097538	19.126	19.091	19.188	0	285	31	1.13399579921816	0.0199817200584811	1.13399579921816	458.054158039732	0	8.07120270100091						184	12	3	NaN	NaN	NaN	4.7587E-05	1	22364	74.524	63.168	1	42751			18983	1026	16015	16482	18983	18983		
TIEYLQPNPASR	12	Unmodified	_TIEYLQPNPASR_			0	0	0	Q99961;Q99962	Q99961	Q99961	SH3GL1;SH3GL2	Endophilin-A2;Endophilin-A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.862066	1387.70958	1.7428	0.001211	-7.9337	-0.0055128	-6.1908	-0.0043018	695.359153681181	7.8552	0.23945	7.8552	7.7309	7.9704	0	486	61	0.999498404980629	0.0403455444968032	0.999498404980629	404.311535488306	0	16.3203552545243						312	28	2	NaN	NaN	NaN	0.0022193	1	15076	77.358	58.851	1	144900			18984	2684	16016	16483	18984	18984		
TIFAYFTGSK	10	Unmodified	_TIFAYFTGSK_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.795132	1133.57571	0.4339	0.00024637	-0.64497	-0.00036621	-0.21106	-0.00011984	567.79460012124	14.001	0.24827	14.001	13.93	14.178	0	660	76	0.882057989648486	0.0508069975986111	0.882057989648486	357.593178458483	0	20.5975525106463						1544	29	5	NaN	NaN	NaN	0.0067053	1	7635	44.82	31.993	1	553050			18985	2704	16017	16484	18985	18985		
TIFCLTCSPHHEDLVAIGYK	20	Unmodified	_TIFCLTCSPHHEDLVAIGYK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.717051	2360.12932	0.78265	0.0006165	0.12274	9.668E-05	0.90538	0.00071318	788.050972283755	12.547	0.088671	12.547	12.511	12.6	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	600.337281859535	0	9.75362489250745						242	11	5	NaN	NaN	NaN	0.0019453	1	36124	32.6	26.984	1	54106			18986	2355	16018	16485	18986	18986		
TIFIISMYK	9	Unmodified	_TIFIISMYK_			0	0	0	Q14116	Q14116	Q14116	IL18	Interleukin-18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.312103	1114.60965	-0.044469	-2.4828E-05	-0.47104	-0.00026298	-0.51551	-0.00028781	558.311510667844	15.003	0.18621	15.003	14.923	15.109	0	624	52	0.906433495720521	0.0345056424959307	0.906433495720521	367.550322708265	0	13.9917159885558						308	22	2	NaN	NaN	NaN	0.012358	1	7123	26.947	20.256	1	101260			18987	1719	16019	16486	18987	18987		
TIFQGIAAK	9	Unmodified	_TIFQGIAAK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.779285	947.544017	-0.39367	-0.0001869	-4.1409	-0.001966	-4.5346	-0.0021529	474.778643877421	8.6446	0.23961	8.6446	8.5559	8.7955	0	735	64	0.831145085810763	0.0428203400370405	0.831145085810763	337.746403192777	0	17.4005911577933						420	28	3	NaN	NaN	NaN	0.063594	1	3204	22.386	2.899	1	128060			18988	1205	16020	16487	18988	18988		
TIFTGHTAVVEDVSWHLLHESLFGSVADDQK	31	Unmodified	_TIFTGHTAVVEDVSWHLLHESLFGSVADDQK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	860.429573	3437.68918	1.0598	0.0009119	-1.4352	-0.0012349	-0.37537	-0.00032298	860.679291596489	18.763	0.10642	18.763	18.727	18.834	0	462	34	1.01562323939346	0.0221639917190946	1.01562323939346	816.81421762597	0	17.8253734783701						390	13	6	NaN	NaN	NaN	0.010083	1	38625	27.18	24.767	1	87189			18989	1582	16021	16488	18989	18989		
TIGGGDDSFNTFFSETGAGK	20	Unmodified	_TIGGGDDSFNTFFSETGAGK_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.45016	2006.88576	1.8368	0.001845	1.4648	0.0014713	3.3016	0.0033163	1004.45181118219	14.409	0.19505	14.409	14.276	14.471	0	264	49	1.14797626962532	0.0319224291995859	1.14797626962532	462.956731442048	0	12.8737012018148						439	23	3	NaN	NaN	NaN	1.0565E-07	1	31743	77.431	72.615	1	95258			18990	1447;2696	16022	16489	18990	18990		
TIGGGDDSFNTFFSETGAGK	20	Unmodified	_TIGGGDDSFNTFFSETGAGK_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.45016	2006.88576	1.6017	0.0016089	1.7222	0.0017298	3.3239	0.0033387	1004.45248804812	15.083	0.26603	15.083	14.932	15.198	0	249	46	1.15795408347545	0.0299252192547748	1.15795408347545	466.980590872275	0	12.0682648552303						553	31	3	NaN	NaN	NaN	0.06359	1	31744	17.238	15.764	1	122390			18991	1447;2696	16022	16489	18991	18991		
TIGGGDDSFNTFFSETGAGK	20	Unmodified	_TIGGGDDSFNTFFSETGAGK_			0	0	0	P68363;Q9BQE3	P68363;Q9BQE3	Q9BQE3	TUBA1B;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.45016	2006.88576	1.9002	0.0019087	2.039	0.0020481	3.9392	0.0039568	1004.95365070631	14.728	0.30149	14.728	14.595	14.897	0	252	148	1.15595906938629	0.0977559674795088	1.15595906938629	466.176039079263	0	39.4230997643826						3052	35	7	NaN	NaN	NaN	3.8755E-59	1	31745	304.64	290.28	1	5685900			18992	1447;2696	16022	16489	18992	18992		
TIGGGDDSFTTFFCETGAGK	20	Unmodified	_TIGGGDDSFTTFFCETGAGK_			0	0	0	P68366	P68366	P68366	TUBA4A	Tubulin alpha-4A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.45184	2066.88914	1.6199	0.0016757	0.44273	0.00045799	2.0627	0.0021337	1034.95371904632	15.659	0.22169	15.659	15.606	15.828	0	231	97	1.16991841121525	0.0637747573565637	1.16991841121525	471.71147480307	0	25.7140024120344						1576	26	6	NaN	NaN	NaN	4.8438E-29	1	32822	212.69	195.28	1	785410			18993	1448	16023	16490	18993	18993		
TIGTGLVTNTLAMTEEEK	18	Unmodified	_TIGTGLVTNTLAMTEEEK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.485156	1906.95576	2.5549	0.0024386	0.17898	0.00017084	2.7339	0.0026095	954.485710292714	14.462	0.31923	14.462	14.391	14.71	0	249	67	1.15795408347545	0.0438933519706592	1.15795408347545	467.148662092459	0	17.707714788055						1377	37	7	NaN	NaN	NaN	5.6709E-71	1	29748	287.34	249.84	1	1208800			18994	1131	16024	16491	18994	18994		
TIGTGLVTNTLAMTEEEK	18	Oxidation (M)	_TIGTGLVTNTLAM(Oxidation (M))TEEEK_	TIGTGLVTNTLAM(1)TEEEK	TIGTGLVTNTLAM(130)TEEEK	0	1	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.482613	1922.95067	2.4453	0.0023536	-1.9836	-0.0019091	0.46179	0.00044446	962.481274346339	12.733	0.13304	12.733	12.68	12.813	0	243	55	1.16194328902838	0.0359028635435696	1.16194328902838	468.729851831564	0	14.4832747587695						557	16	5	NaN	NaN	NaN	6.7437E-10	1	30119	126.32	111.96	1	277890			18995	1131	16024	16492	18995	18995	408	
TIGTGLVTNTLAMTEEEK	18	Oxidation (M)	_TIGTGLVTNTLAM(Oxidation (M))TEEEK_	TIGTGLVTNTLAM(1)TEEEK	TIGTGLVTNTLAM(190)TEEEK	0	1	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.482613	1922.95067	2.0624	0.001985	-0.30302	-0.00029165	1.7594	0.0016934	962.983777906818	12.644	0.088657	12.644	12.591	12.68	0	243	55	1.16194328902838	0.0359028635435696	1.16194328902838	468.729846182052	0	14.4832745842053						492	11	4	NaN	NaN	NaN	9.8364E-19	1	30120	190.06	170.5	1	339290			18996	1131	16024	16492	18996	18996	408	
TIHTDVLFGLLK	12	Unmodified	_TIHTDVLFGLLK_			0	0	0	Q14562	Q14562	Q14562	DHX8	ATP-dependent RNA helicase DHX8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.934372	1355.78129	-2.3509	-0.0010648	-0.0259	-1.1731E-05	-2.3768	-0.0010765	452.934230738975	15.65	0.079785	15.65	15.606	15.686	0	822	19	0.771863999559055	0.0122898254393368	0.771863999559055	468.450443378657	0	7.45879349133071						118	10	3	NaN	NaN	NaN	0.010625	1	14072	44.82	41.718	1	26073			18997	1756	16025	16493	18997	18997		
TIIGQQGDQSCANK	14	Unmodified	_TIIGQQGDQSCANK_			0	0	0	P35251	P35251	P35251	RFC1	Replication factor C subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.362104	1518.70965	2.3158	0.0017608	-0.88562	-0.00067339	1.4301	0.0010874	760.361078436881	3.4834	0.07094	3.4834	3.4657	3.5366	0	453	25	1.02166545906632	0.0161092490285764	1.02166545906632	412.92652458652	0	6.51087511674115						87	9	2	NaN	NaN	NaN	9.1316E-06	1	19083	110.44	104.18	1	17497			18998	966	16026	16494	18998	18998		
TIIPLISQCTPK	12	Unmodified	_TIIPLISQCTPK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.889238	1369.76392	1.5166	0.0010402	-0.65118	-0.00044664	0.86541	0.00059358	685.8892061766	12.653	0.36361	12.653	12.547	12.91	0	480	85	1.00353128488872	0.0564447681024964	1.00353128488872	405.995327352594	0	22.8356728367023						1345	42	5	NaN	NaN	NaN	0.00026478	1	14495	110.88	96.89	1	684990			18999	1023	16027	16495	18999	18999		
TIIQNPTDQQK	11	Unmodified	_TIIQNPTDQQK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.340966	1284.66738	2.5987	0.0016719	-1.021	-0.00065687	1.5777	0.001015	643.340804889399	4.9021	0.34578	4.9021	4.7425	5.0883	0	552	76	0.955063035883597	0.0505821658502509	0.955063035883597	386.642308205028	0	20.4773974319473						1297	40	5	NaN	NaN	NaN	1.0643E-11	1	11901	141.29	122.04	1	1176700			19000	3319	16028	16496	19000	19000		
TIISYIDEQFER	12	Unmodified	_TIISYIDEQFER_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.380288	1512.74602	0.90521	0.00068559	0.31597	0.00023931	1.2212	0.0009249	757.380341711598	16.342	0.19508	16.342	16.28	16.475	0	417	52	1.04580932352505	0.0341731416799977	1.04580932352505	422.699795492192	0	13.8122501631291						764	23	6	NaN	NaN	NaN	5.0364E-05	1	18889	81.335	73.334	1	301180			19001	1792	16029	16497	19001	19001		
TILATGELGTLTNVYK	16	Unmodified	_TILATGELGTLTNVYK_			0	0	0	Q9Y315	Q9Y315	Q9Y315	DERA	Deoxyribose-phosphate aldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.472177	1692.9298	1.2762	0.0010815	0.78455	0.00066488	2.0607	0.0017464	847.473032798106	14.932	0.079821	14.932	14.905	14.985	0	303	22	1.12200181823275	0.0139997198598183	1.12200181823275	453.057708661111	0	5.65300420954492						117	10	3	NaN	NaN	NaN	0.0020093	1	24295	37.504	33.521	1	31905			19002	3364	16030	16498	19002	19002		
TILEEEITPTIQK	13	Unmodified	_TILEEEITPTIQK_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.919246	1513.82394	1.7325	0.0013131	-1.5186	-0.001151	0.21395	0.00016215	757.918510864145	11.465	0.19509	11.465	11.358	11.553	0	390	55	1.06389100039157	0.0361558820177341	1.06389100039157	430.005357892309	0	14.6135487387577						537	23	4	NaN	NaN	NaN	8.1708E-17	1	18941	187.33	149.74	1	189390			19003	423	16031	16499	19003	19003		
TILESNDVPGMLAYSLK	17	Unmodified	_TILESNDVPGMLAYSLK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.982052	1849.94955	1.1792	0.0010919	-3.2003	-0.0029634	-2.0211	-0.0018715	926.480690078943	16.271	0.17734	16.271	16.209	16.386	0	240	46	1.16393748060522	0.0299169932793457	1.16393748060522	469.667038037126	0	12.0719762483984						628	21	5	NaN	NaN	NaN	2.8421E-10	1	28494	109.47	95.69	1	191800			19004	2641	16032	16500	19004	19004		
TILGPTENIK	10	Unmodified	_TILGPTENIK_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.313689	1084.61282	0.9933	0.00053967	-2.6641	-0.0014474	-1.6708	-0.00090778	543.312257683926	7.3231	0.15959	7.3231	7.2432	7.4028	0	651	58	0.888155670855968	0.0386347449867347	0.888155670855968	360.260480460809	0	15.6713200716128						439	19	3	NaN	NaN	NaN	0.058723	1	6332	30.918	15.42	1	146240			19005	335	16033	16501	19005	19005		
TILGTIMNTIK	11	Unmodified	_TILGTIMNTIK_			0	0	0	Q5T1M5	Q5T1M5	Q5T1M5	FKBP15	FK506-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.852124	1203.68969	-0.19618	-0.00011827	-0.69514	-0.00041907	-0.89132	-0.00053733	602.851581314301	17.628	0.16847	17.628	17.513	17.681	0	597	46	0.924688525662974	0.0304124071077684	0.924688525662974	374.613426832821	0	12.3207931413527						299	20	3	NaN	NaN	NaN	0.0052888	1	9589	57.888	38.632	1	63385			19006	1988	16034	16502	19006	19006		
TILPAAAQDVYYR	13	Unmodified	_TILPAAAQDVYYR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.893366	1479.77218	1.554	0.0011513	-0.25422	-0.00018835	1.2998	0.00096299	740.893083732471	11.5	0.13313	11.5	11.447	11.58	0	390	64	1.06389100039157	0.0421905974214265	1.06389100039157	430.094995213942	0	17.0562254867869						723	16	4	NaN	NaN	NaN	5.4503E-05	1	17901	92.445	80.487	1	302430			19007	518	16035	16503	19007	19007		
TILQHLSEAWR	11	Unmodified	_TILQHLSEAWR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.913971	1352.72008	-1.8949	-0.00085631	-1.6048	-0.00072525	-3.4997	-0.0015816	451.913390194304	12.183	0.08868	12.183	12.148	12.236	0	840	25	0.759569036796863	0.0163978531356664	0.759569036796863	460.999052142469	0	9.9522155149873						125	11	3	NaN	NaN	NaN	0.03273	1	13977	28.647	23.496	1	33390			19008	2064	16036	16504	19008	19008		
TILQHLSEAWR	11	Unmodified	_TILQHLSEAWR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.913971	1352.72008	-2.0954	-0.00094694	-0.20367	-9.2043E-05	-2.2991	-0.001039	451.914019106751	12.183	0.11523	12.183	12.13	12.245	0	801	37	0.78619514174348	0.0245591241108515	0.78619514174348	477.15901049728	0	14.9054690587712						273	14	4	NaN	NaN	NaN	0.004353	1	13978	53.517	44.54	1	68686			19009	2064	16036	16504	19009	19009		
TILQHLSEAWR	11	Unmodified	_TILQHLSEAWR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.367318	1352.72008	1.2043	0.00081578	-0.43363	-0.00029373	0.77071	0.00052205	677.367209055355	12.183	0.19505	12.183	12.13	12.325	0	477	31	1.0055473068722	0.0201560438819375	1.0055473068722	406.862151358497	0	8.15549036891179						408	23	4	NaN	NaN	NaN	0.019804	1	13979	47.361	25.318	1	147340			19010	2064	16036	16504	19010	19010		
TILSNQTVDIPENVDITLK	19	Unmodified	_TILSNQTVDIPENVDITLK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.051081	2112.13141	1.0517	0.00074153	-0.78403	-0.00055278	0.26771	0.00018875	705.385007973053	15.5	0.097548	15.5	15.464	15.562	0	549	34	0.957085760909907	0.0222499784868294	0.957085760909907	578.761378359727	0	13.4548320991308						277	12	4	NaN	NaN	NaN	0.0015586	1	33492	76.196	75.549	1	85848			19011	943	16037	16505	19011	19011		
TILSNQTVDIPENVDITLK	19	Unmodified	_TILSNQTVDIPENVDITLK_			0	0	0	P32969	P32969	P32969	RPL9	60S ribosomal protein L9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.07298	2112.13141	2.2295	0.0023567	0.73394	0.00077583	2.9634	0.0031326	1057.57566825784	15.5	0.24842	15.5	15.446	15.695	0	135	115	1.23356193185193	0.0754110144165701	1.23356193185193	497.30146041041	0	30.401398285767						1642	29	5	NaN	NaN	NaN	2.1252E-36	1	33494	209.93	188.96	1	1285200			19012	943	16037	16505	19012	19012		
TILTLTGVSTLGDVK	15	Unmodified	_TILTLTGVSTLGDVK_			0	0	0	A6NDG6	A6NDG6	A6NDG6	PGP	Phosphoglycolate phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.442889	1516.87122	1.8524	0.0014068	0.56791	0.00043129	2.4203	0.0018381	759.443035332687	15.154	0.15073	15.154	15.101	15.251	0	297	34	1.12600091227925	0.0219904803552342	1.12600091227925	455.100760051804	0	8.88798953396355						427	18	5	NaN	NaN	NaN	2.3173E-08	1	19050	130.99	111.67	1	197610			19013	12	16038	16506	19013	19013		
TIMVNYNPETVSTDYDMCDR	20	Unmodified	_TIMVNYNPETVSTDYDMCDR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1212.51125	2423.00795	1.6045	0.0019455	-0.16864	-0.00020448	1.4359	0.0017411	1213.01205891239	12.857	0.05322	12.857	12.839	12.893	0	66	25	1.27913350869533	0.0158281976076649	1.27913350869533	515.240883703	0	6.375671083089						87	7	3	NaN	NaN	NaN	1.1019E-10	1	36455	68.127	66.157	1	12301			19014	867	16039	16507	19014	19014		
TINEVENQILTR	12	Unmodified	_TINEVENQILTR_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.385905	1428.75726	2.2911	0.001639	-0.80345	-0.00057478	1.4876	0.0010642	715.385768092361	10.427	0.20396	10.427	10.374	10.578	0	477	82	1.0055473068722	0.0543875358007274	1.0055473068722	406.643067731154	0	21.994305243718						1121	24	5	NaN	NaN	NaN	2.6859E-07	1	16359	141.44	116.62	1	564830			19015	221;671	16040	16508	19015	19015		
TINLYPLTNYTFGTK	15	Unmodified	_TINLYPLTNYTFGTK_			0	0	0	O43809	O43809	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.45907	1744.90359	1.6509	0.001442	-2.5246	-0.0022051	-0.87371	-0.00076315	873.958753308197	16.377	0.30147	16.377	16.307	16.608	0	294	58	1.12800004657306	0.0379731159015164	1.12800004657306	455.369591892898	0	15.3296113271526						896	35	4	NaN	NaN	NaN	0.023962	1	25757	44.045	30.827	1	535190			19016	232	16041	16509	19016	19016		
TINQWVK	7	Unmodified	_TINQWVK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.750527	887.486502	-1.802	-0.00080145	1.2015	0.00053439	-0.60047	-0.00026706	444.751412606727	6.321	0.16848	6.321	6.2855	6.454	0	780	34	0.800512323802183	0.0224921689856458	0.800512323802183	325.612907436549	0	9.14881672674926						211	20	2	NaN	NaN	NaN	0.03477	1	2116	60.709	33.004	1	50282			19017	916	16042	16510	19017	19017		
TIPLTDNTVIEEHLGK	16	Unmodified	_TIPLTDNTVIEEHLGK_			0	0	0	Q6DKI1	Q6DKI1	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	593.987753	1778.94143	0.054906	3.2614E-05	-0.26389	-0.00015675	-0.20898	-0.00012413	594.322000808353	11.447	0.062089	11.447	11.42	11.483	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	537.734426715289	0	9.84287198523043						183	8	4	NaN	NaN	NaN	0.00044056	1	26654	97.594	93.066	1	56702			19018	2030	16043	16511	19018	19018		
TIPLTDNTVIEEHLGK	16	Unmodified	_TIPLTDNTVIEEHLGK_			0	0	0	Q6DKI1	Q6DKI1	Q6DKI1	RPL7L1	60S ribosomal protein L7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.477991	1778.94143	1.9587	0.0017442	-0.1252	-0.00011149	1.8335	0.0016327	890.477462483271	11.447	0.079844	11.447	11.42	11.5	0	243	34	1.16194328902838	0.0219361104530864	1.16194328902838	469.001597307821	0	8.85419360683369						184	10	3	NaN	NaN	NaN	0.012366	1	26655	42.941	40.047	1	42875			19019	2030	16043	16511	19019	19019		
TIQAVGECEQSESSAFK	17	Unmodified	_TIQAVGECEQSESSAFK_			0	0	0	Q9BR77	Q9BR77	Q9BR77	CCDC77	Coiled-coil domain-containing protein 77	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.928005	1869.84146	2.2403	0.0020968	0.22486	0.00021046	2.4652	0.0023073	936.430042012141	7.4205	0.097526	7.4205	7.3762	7.4738	0	309	25	1.11800162319566	0.016005187067117	1.11800162319566	451.095467589225	0	6.45783261320952						156	12	4	NaN	NaN	NaN	0.0074086	1	28923	46.206	44.837	1	23836			19020	2703	16044	16512	19020	19020		
TIQFVDWCPTGFK	13	Unmodified	_TIQFVDWCPTGFK_			0	0	0	Q9BQE3	Q9BQE3	Q9BQE3	TUBA1C	Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.887226	1597.7599	1.5435	0.0012346	0.45616	0.00036487	1.9997	0.0015995	799.888002820001	15.854	0.37242	15.854	15.695	16.067	-1.7764E-15	408	67	1.0518390438467	0.0442027246723937	1.0518390438467	424.931751223741	0	17.8574291511455						1638	43	6	NaN	NaN	NaN	2.154E-11	1	21504	190.68	159.25	1	2127200			19021	2696	16045	16513	19021	19021		
TIQGDEEDLR	10	Unmodified	_TIQGDEEDLR_			0	0	0	P54920	P54920	P54920	NAPA	Alpha-soluble NSF attachment protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.280574	1174.5466	2.0489	0.0012054	3.1551	0.0018561	5.2041	0.0030615	588.281927810709	4.7071	0.18621	4.7071	4.6627	4.8489	0	579	37	0.936845902828289	0.024311389219916	0.936845902828289	379.645371677259	0	9.85189385844734						310	22	3	NaN	NaN	NaN	0.0069129	1	8716	63.397	45.061	1	110780			19022	1260	16046	16514	19022	19022		
TIQGLIDFIK	10	Unmodified	_TIQGLIDFIK_			0	0	0	O94817	O94817	O94817	ATG12	Ubiquitin-like protein ATG12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.339707	1146.66486	-0.90791	-0.00052145	-0.87911	-0.00050491	-1.787	-0.0010264	574.339168322195	16.768	0.11523	16.768	16.732	16.847	0	612	31	0.914549654013882	0.0202847729162148	0.914549654013882	370.714693689846	0	8.22247687175718						252	14	3	NaN	NaN	NaN	0.0080273	1	7983	55.235	35.001	1	67732			19023	387	16047	16515	19023	19023		
TIQQCCENILLNAAWLK	17	Unmodified	_TIQQCCENILLNAAWLK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	692.351932	2074.03397	-0.50299	-0.00034824	-0.26531	-0.00018369	-0.7683	-0.00053193	692.686079403356	17.255	0.097548	17.255	17.22	17.317	0	567	22	0.944945209309785	0.0141688807218944	0.944945209309785	571.488332194521	0	8.56912118611933						191	12	4	NaN	NaN	NaN	0.0018999	1	32930	71.219	69.509	1	43811			19024	1277	16048	16516	19024	19024		
TIQQCCENILLNAAWLK	17	Unmodified	_TIQQCCENILLNAAWLK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.02426	2074.03397	0.62694	0.00065078	0.66615	0.00069148	1.2931	0.0013423	1038.5262830243	17.255	0.15075	17.255	17.202	17.353	0	171	61	1.20972836110953	0.0397607969895324	1.20972836110953	487.751645494757	0	16.031197400415						591	18	5	NaN	NaN	NaN	0.00011582	1	32933	76.563	72.713	1	133080			19025	1277	16048	16516	19025	19025		
TIQVDNTDAEGR	12	Unmodified	_TIQVDNTDAEGR_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.815313	1317.61607	2.2683	0.0014966	-0.4322	-0.00028517	1.8361	0.0012115	659.815127938846	4.0953	0.13302	4.0953	4.0509	4.1839	0	555	37	0.953040030838688	0.0242811063417099	0.953040030838688	385.720677668113	0	9.82721028456052						368	16	3	NaN	NaN	NaN	0.00043237	1	12901	55.754	42.58	1	155510			19026	880	16049	16517	19026	19026		
TIQVSDFVR	9	Unmodified	_TIQVSDFVR_			0	0	0	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.790381	1063.56621	0.69865	0.00037223	-2.4827	-0.0013228	-1.7841	-0.00095055	532.789512049514	11.039	0.20395	11.039	10.942	11.146	0	642	40	0.894250814548268	0.0264122944165538	0.894250814548268	362.822856636158	0	10.7162151318477						343	24	3	NaN	NaN	NaN	0.0016348	1	5817	51.864	42.471	1	80550			19027	420	16050	16518	19027	19027		
TIRPMDMETIEASVMK	16	Unmodified	_TIRPMDMETIEASVMK_			0	0	1	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.971952	1850.89403	0.35667	0.00022041	2.0451	0.0012638	2.4018	0.0014842	618.307024846383	14.001	0.088668	14.001	13.957	14.045	0	597	31	0.924688525662974	0.0202707209833614	0.924688525662974	559.685083716395	0	12.2692342942507						143	11	3	NaN	NaN	NaN	0.0043074	1	28520	23.149	16.293	1	30434			19028	644	16051	16519	19028	19028		
TISHVIIGLK	10	Unmodified	_TISHVIIGLK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.842416	1079.67028	1.493	0.00080747	-0.45241	-0.00024468	1.0406	0.00056278	540.842158648402	7.9261	0.13298	7.9261	7.8818	8.0148	0	585	34	0.932794566565362	0.0222869832094168	0.932794566565362	378.388964059945	0	9.04073500308243						321	16	4	NaN	NaN	NaN	0.0003545	1	6209	79.059	63.477	1	151700			19029	3331	16052	16520	19029	19029		
TISLTDFLAEDGGTGGGSTYVSK	23	Unmodified	_TISLTDFLAEDGGTGGGSTYVSK_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1138.55007	2275.08559	0.75631	0.00086109	-1.6163	-0.0018402	-0.85996	-0.00097911	1139.04995274237	16.573	0.27486	16.573	16.475	16.75	0	69	118	1.27715511956461	0.0772948105772264	1.27715511956461	514.634767649311	0	31.146253319228						2570	32	6	NaN	NaN	NaN	9.4267E-63	1	35418	233.03	222.71	1	771280			19030	824	16053	16521	19030	19030		
TISQTSAPVWDESASFLIR	19	Unmodified	_TISQTSAPVWDESASFLIR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.53657	2107.05858	1.1049	0.0011652	-3.4582	-0.0036468	-2.3534	-0.0024817	1054.53193805319	16.723	0.19508	16.723	16.608	16.803	0	156	52	1.21966378336455	0.0337758120573306	1.21966378336455	491.706269944012	0	13.6166858338829						615	23	4	NaN	NaN	NaN	0.002339	1	33424	62.494	50.323	1	158070			19031	2726	16054	16522	19031	19031		
TISSSLAVVDLIDAIQPGCINYDLVK	26	Unmodified	_TISSSLAVVDLIDAIQPGCINYDLVK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	935.496525	2803.46775	0.85338	0.00079834	-1.678	-0.0015698	-0.82466	-0.00077146	935.829667452563	20.102	0.03547	20.102	20.093	20.128	0	432	76	1.035754240522	0.0502338424152609	1.035754240522	625.324002124839	0	30.3280702624864						149	5	5	NaN	NaN	NaN	0.00060836	1	37904	34.417	34.417	1	42799			19032	683	16055	16523	19032	19032		
TISTSDPAEVLVK	13	Unmodified	_TISTSDPAEVLVK_			0	0	0	Q86UE4	Q86UE4	Q86UE4	MTDH	Protein LYRIC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.371932	1358.72931	1.6859	0.001147	0.52935	0.00036016	2.2152	0.0015072	680.372397382203	10.161	0.23054	10.161	10.055	10.285	1.7764E-15	489	58	0.997481546940468	0.0383097280775055	0.997481546940468	403.580544027087	0	15.5000971661807						678	27	4	NaN	NaN	NaN	0.059702	1	14160	36.952	32.123	1	236060			19033	2165	16056	16524	19033	19033		
TITGFQTHTTPVLLAHGER	19	Unmodified	_TITGFQTHTTPVLLAHGER_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	520.529998	2078.09089	0.51744	0.00026934	1.061	0.00055229	1.5785	0.00082163	520.780796457763	8.8044	0.11537	8.8044	8.7599	8.8753	0	660	28	0.882057989648486	0.0182955837794518	0.882057989648486	711.261961041812	0	14.7529447611074						270	14	4	NaN	NaN	NaN	0.047454	1	32995	25.922	24.651	1	77425			19034	1642	16057	16525	19034	19034		
TITGFQTHTTPVLLAHGER	19	Unmodified	_TITGFQTHTTPVLLAHGER_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	693.704239	2078.09089	1.3094	0.00090834	1.6115	0.0011179	2.9209	0.0020262	694.373372283108	8.8044	0.11539	8.8044	8.7422	8.8576	0	477	22	1.0055473068722	0.0141121546928573	1.0055473068722	608.131653167698	0	8.53470334460985						175	14	3	NaN	NaN	NaN	0.01672	1	32996	15.015	12.3	1	43817			19035	1642	16057	16525	19035	19035		
TITLEVEPSDTIENVK	16	Unmodified	_TITLEVEPSDTIENVK_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.467289	1786.92002	1.332	0.0011914	-2.9361	-0.0026263	-1.6042	-0.0014349	894.464858334006	11.988	0.17735	11.988	11.899	12.077	0	285	73	1.13399579921816	0.0479693534210168	1.13399579921816	457.705200477651	0	19.3614672466048						591	21	3	NaN	NaN	NaN	4.0805E-12	1	26900	140.01	103.77	1	132310			19036	1419	16058	16526	19036	19036		
TITLEVEPSDTIENVK	16	Unmodified	_TITLEVEPSDTIENVK_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.467289	1786.92002	2.8673	0.0025647	-1.3386	-0.0011973	1.5287	0.0013674	894.466876171287	12.76	0.57638	12.76	12.573	13.15	0	243	88	1.16194328902838	0.057903216089374	1.16194328902838	468.985405294776	0	23.3709885172225						1766	66	4	NaN	NaN	NaN	0.037439	1	26901	30.875	26.058	1	725930			19037	1419	16058	16526	19037	19037		
TITLEVEPSDTIENVK	16	Unmodified	_TITLEVEPSDTIENVK_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.467289	1786.92002	1.9477	0.0017421	0.082659	7.3936E-05	2.0303	0.0018161	894.968602391202	12.201	0.11529	12.201	12.148	12.263	0	297	88	1.12600091227925	0.0579350823400258	1.12600091227925	454.478280831815	0	23.383850167978						435	14	2	NaN	NaN	NaN	2.4851E-06	1	26902	80.623	68.453	1	146300			19038	1419	16058	16526	19038	19038		
TITLEVEPSDTIENVK	16	Unmodified	_TITLEVEPSDTIENVK_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.467289	1786.92002	2.7238	0.0024364	1.9106	0.001709	4.6345	0.0041454	894.468869559001	12.485	0.37239	12.485	12.352	12.724	0	243	151	1.16194328902838	0.0998813987673259	1.16194328902838	468.985393547598	0	40.3142886157112						4153	43	6	NaN	NaN	NaN	2.4717E-24	1	26903	203.93	182.78	1	11734000			19039	1419	16058	16526	19039	19039		
TITTLYVGGLGDTITETDLR	20	Unmodified	_TITTLYVGGLGDTITETDLR_			0	0	0	Q9NW64	Q9NW64	Q9NW64	RBM22	Pre-mRNA-splicing factor RBM22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.06262	2138.11068	0.16952	0.00018139	-0.072243	-7.7304E-05	0.097273	0.00010409	1070.56340926956	16.422	0.1064	16.422	16.395	16.502	0	87	67	1.26527909472281	0.0435991607863409	1.26527909472281	510.047516346206	0	17.5752873548613						327	13	3	NaN	NaN	NaN	1.0132E-10	1	33853	124.62	120.98	1	82910			19040	3079	16059	16527	19040	19040		
TITYQAVPSEVPNEEPK	17	Unmodified	_TITYQAVPSEVPNEEPK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.478188	1900.94182	2.3061	0.0021942	-1.188	-0.0011304	1.1181	0.0010638	951.478008300053	9.2656	0.13307	9.2656	9.2125	9.3455	0	282	73	1.13599383354359	0.0479495580494289	1.13599383354359	458.2998062432	0	19.3445356080422						710	16	3	NaN	NaN	NaN	0.00019498	1	29619	63.766	52.794	1	263910			19041	2796	16060	16528	19041	19041		
TIVEELLADSEFR	13	Unmodified	_TIVEELLADSEFR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.393396	1520.77224	0.51334	0.00039085	0.113	8.604E-05	0.62634	0.00047689	761.393186920555	18.559	0.079785	18.559	18.515	18.594	0	459	28	1.01763759082241	0.0181266605748145	1.01763759082241	411.293539007454	0	7.32616252135227						149	10	3	NaN	NaN	NaN	3.6339E-05	1	19163	58.476	43.501	1	35997			19042	1974	16061	16529	19042	19042		
TIVEELLADSEFRR	14	Unmodified	_TIVEELLADSEFRR_			0	0	1	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.96506	1676.87335	-0.66562	-0.00037272	-0.92288	-0.00051678	-1.5885	-0.0008895	559.964608527647	16.174	0.070965	16.174	16.147	16.218	0	666	31	0.877991458330206	0.0203383037367069	0.877991458330206	531.83038409565	0	12.3196276974243						164	9	3	NaN	NaN	NaN	0.04313	1	23822	44.598	37.04	1	31344			19043	1974	16062	16530	19043	19043		
TIVEEVQDGK	10	Unmodified	_TIVEEVQDGK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.290411	1116.56627	1.5713	0.00087881	-3.0085	-0.0016826	-1.4372	-0.0008038	559.289757454545	5.1504	0.16845	5.1504	5.044	5.2125	0	639	34	0.896281965493857	0.0223364666145487	0.896281965493857	363.426203989512	0	9.05703515722422						254	20	3	NaN	NaN	NaN	0.0095269	1	7176	39.01	26.943	1	62895		+	19044	36	16063	16531	19044	19044		
TIVEEVQDGK	10	Unmodified	_TIVEEVQDGK_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;CON__Q6IFX2	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.290411	1116.56627	1.6289	0.00091103	-0.14039	-7.8516E-05	1.4885	0.00083251	559.290998336495	5.7357	0.3458	5.7357	5.6471	5.9929	0	657	67	0.884090832094921	0.0447194569553507	0.884090832094921	358.482906275922	0	18.1329342127075						1201	40	5	NaN	NaN	NaN	2.7767E-07	1	7178	158.37	126.24	1	1545700		+	19045	36	16063	16531	19045	19045		
TIVITSHPGQIVK	13	Unmodified	_TIVITSHPGQIVK_			0	0	0	P31689	P31689	P31689	DNAJA1	DnaJ homolog subfamily A member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.94516	1391.81365	-0.10914	-5.0744E-05	1.1439	0.00053183	1.0347	0.00048109	464.945901696748	6.9151	0.19504	6.9151	6.8619	7.0569	0	729	34	0.835224628594324	0.0224359291106897	0.835224628594324	506.772238319821	0	13.612991792812						354	23	4	NaN	NaN	NaN	0.0078107	1	15215	45.939	37.466	1	195990			19046	926	16064	16532	19046	19046		
TIVITSHPGQIVK	13	Unmodified	_TIVITSHPGQIVK_			0	0	0	P31689	P31689	P31689	DNAJA1	DnaJ homolog subfamily A member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.914101	1391.81365	2.3198	0.0016167	0.1371	9.5545E-05	2.4569	0.0017122	696.914372884033	6.9151	0.26609	6.9151	6.8619	7.128	0	438	46	1.03173026378327	0.0301902523079756	1.03173026378327	417.337613524245	0	12.2120367039578						602	31	5	NaN	NaN	NaN	7.6366E-12	1	15217	165.39	136.74	1	412860			19047	926	16064	16532	19047	19047		
TIVQLENEIYQIK	13	Unmodified	_TIVQLENEIYQIK_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.940513	1589.86647	2.1826	0.0017372	-0.44925	-0.00035757	1.7334	0.0013796	795.940477924916	15.127	0.20388	15.127	15.021	15.225	1.7764E-15	336	55	1.09998710857178	0.036051375024104	1.09998710857178	444.402019257945	0	14.5649923829918						709	24	5	NaN	NaN	NaN	1.4548E-07	1	21283	134.2	88.26	1	290840			19048	370	16065	16533	19048	19048		
TIVTDVFQGSMR	12	Unmodified	_TIVTDVFQGSMR_			0	0	0	Q53GS9	Q53GS9	Q53GS9	USP39	U4/U6.U5 tri-snRNP-associated protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.345194	1352.67584	0.93077	0.00063046	-1.0063	-0.00068159	-0.075497	-5.1138E-05	677.34458469498	13.442	0.14186	13.442	13.398	13.54	-1.7764E-15	531	37	0.969216233931596	0.0242475250130607	0.969216233931596	392.162091363391	0	9.81097900200785						304	17	4	NaN	NaN	NaN	7.5039E-05	1	13964	90.142	69.909	1	80854			19049	1949	16066	16534	19049	19049		
TIVTNEYMK	9	Unmodified	_TIVTNEYMK_			0	0	0	P48739	P48739	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.778625	1097.5427	1.1943	0.00065661	1.2048	0.00066239	2.3991	0.001319	549.779315904968	6.4096	0.097516	6.4096	6.3742	6.4717	0	582	31	0.934820374997243	0.0202594899473871	0.934820374997243	379.132919739571	0	8.2165940983154						184	12	3	NaN	NaN	NaN	0.047521	1	6646	31.952	0	1	54123			19050	1118	16067	16535	19050	19050		
TKDDIIICEIGDVFK	15	Unmodified	_TKDDIIICEIGDVFK_			0	0	1	Q9Y512	Q9Y512	Q9Y512	SAMM50	Sorting and assembly machinery component 50 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.306205	1764.89679	-2.5071	-0.0014774	0.8996	0.00053014	-1.6075	-0.0009473	589.640895862026	17.016	0.062066	17.016	16.989	17.051	0	753	25	0.81889964927511	0.0163340619501384	0.81889964927511	495.833798523939	0	9.8900762617638						73	8	2	NaN	NaN	NaN	0.00023828	1	26267	62.454	41.093	1	15207			19051	3421	16068	16536	19051	19051		
TKPFPWGDGNHTLFHNPHVNPLPTGYEDE	29	Unmodified	_TKPFPWGDGNHTLFHNPHVNPLPTGYEDE_			0	0	1	P12074	P12074	P12074	COX6A1	Cytochrome c oxidase subunit 6A1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	829.89162	3315.53737	1.6298	0.0013526	0.28477	0.00023632	1.9146	0.0015889	830.142534024989	13.026	0.12412	13.026	12.981	13.105	0	447	49	1.02569221487577	0.0322140561522897	1.02569221487577	825.034705336128	0	25.9119782131764						495	15	5	NaN	NaN	NaN	0.018149	1	38559	19.5	19.492	1	97240			19052	663	16069	16537	19052	19052		
TKPSDEEMLFIYGHYK	16	Oxidation (M)	_TKPSDEEM(Oxidation (M))LFIYGHYK_	TKPSDEEM(1)LFIYGHYK	TKPSDEEM(40)LFIYGHYK	0	1	1	P07108	P07108	P07108	DBI	Acyl-CoA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.648631	1972.92406	0.97545	0.00064248	-0.32505	-0.00021409	0.6504	0.00042838	658.982722234924	9.0174	0.097548	9.0174	8.973	9.0706	0	570	22	0.942920803299286	0.014172805463205	0.942920803299286	570.458131730583	0	8.57441271592643						227	12	4	NaN	NaN	NaN	0.0042866	1	31164	40.224	39.548	1	54523			19053	552	16070	16538	19053	19053	128	
TLAAEMQELR	10	Unmodified	_TLAAEMQELR_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.300255	1160.58596	1.3428	0.00078058	0.93775	0.00054512	2.2806	0.0013257	581.802322034264	9.8243	0.25716	9.8243	9.6913	9.9484	0	609	49	0.916577990479294	0.0324556427464261	0.916577990479294	371.48391623264	0	13.1540898827226						424	30	4	NaN	NaN	NaN	0.0028336	1	8357	85.716	64.441	1	116000			19054	2237	16071	16539	19054	19054		
TLAEHQQLIPLVEK	14	Unmodified	_TLAEHQQLIPLVEK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	540.310279	1617.90901	1.6467	0.00088971	0.69074	0.00037321	2.3374	0.0012629	540.310601886	10.143	0.133	10.143	10.09	10.223	1.7764E-15	585	52	0.932794566565362	0.0344339850202118	0.932794566565362	565.195090453806	0	20.8641001735722						534	16	4	NaN	NaN	NaN	0.0001504	1	22137	93.772	89.526	1	218090			19055	3434	16072	16540	19055	19055		
TLAEHQQLIPLVEK	14	Unmodified	_TLAEHQQLIPLVEK_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.96178	1617.90901	3.0961	0.0025078	-0.65903	-0.00053379	2.4371	0.001974	809.961207816333	10.143	0.088655	10.143	10.099	10.188	0	339	49	1.09798411722691	0.0320368379647857	1.09798411722691	443.526395182216	0	12.9411555528191						382	11	4	NaN	NaN	NaN	0.00013573	1	22138	82.437	80.453	1	95716			19056	3434	16072	16540	19056	19056		
TLAESALQLLYTAK	14	Unmodified	_TLAESALQLLYTAK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.429781	1520.84501	1.4125	0.0010755	1.4084	0.0010724	2.8209	0.0021479	761.430632879569	18.115	0.1241	18.115	18.071	18.195	0	339	70	1.09798411722691	0.0460942233022623	1.09798411722691	443.766599456295	0	18.6296654099931						451	15	3	NaN	NaN	NaN	1.0407E-07	1	19169	154.94	144.69	1	144920			19057	3406	16073	16541	19057	19057		
TLAGDVHIVR	10	Unmodified	_TLAGDVHIVR_			0	0	0	Q9UBQ0	Q9UBQ0	Q9UBQ0	VPS29	Vacuolar protein sorting-associated protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.811648	1079.60874	1.5513	0.00083895	0.72793	0.00039367	2.2792	0.0012326	540.812238658939	6.2767	0.18623	6.2767	6.2323	6.4185	0	591	37	0.928742107665821	0.0243181264417436	0.928742107665821	376.745345356864	0	9.86467703908949						462	22	4	NaN	NaN	NaN	1.5762E-07	1	6206	146.03	116.93	1	296550			19058	3183	16074	16542	19058	19058		
TLAGLPLLVAYK	12	Unmodified	_TLAGLPLLVAYK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.892106	1257.76966	-0.0066098	-4.1634E-06	-0.92936	-0.00058539	-0.93596	-0.00058956	629.891498025915	16.723	0.23055	16.723	16.626	16.856	0	558	79	0.951016745717027	0.0525581496651012	0.951016745717027	385.09179886303	0	21.2821829800549						1023	27	4	NaN	NaN	NaN	0.00068414	1	11156	65.404	62.059	1	312230			19059	288	16075	16543	19059	19059		
TLAGLPLLVAYK	12	Unmodified	_TLAGLPLLVAYK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.892106	1257.76966	0.401	0.00025258	0.60243	0.00037947	1.0034	0.00063205	629.892371600802	16.723	0.19508	16.723	16.635	16.83	0	447	61	1.02569221487577	0.040289830422827	1.02569221487577	415.329861755343	0	16.3144162127482						730	23	4	NaN	NaN	NaN	0.015918	1	11157	41.796	24.326	1	248730			19060	288	16075	16543	19060	19060		
TLAPLLASLLSPGSVLVLSAR	21	Unmodified	_TLAPLLASLLSPGSVLVLSAR_			0	0	0	P35270	P35270	P35270	SPR	Sepiapterin reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.63281	2077.25108	-0.20152	-0.00020951	-0.11824	-0.00012292	-0.31976	-0.00033243	1040.1333397239	20.199	0.0088501	20.199	20.199	20.208	0	105	10	1.25339330680955	0.00594574411113902	1.25339330680955	505.351758186478	0	2.39724611896906						14	2	2	NaN	NaN	NaN	0.051277	1	32980	17.238	16.619	1	2805.2			19061	969	16076	16544	19061	19061		
TLAPTWEELSK	11	Unmodified	_TLAPTWEELSK_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.834985	1273.65542	1.5288	0.00097513	-1.8843	-0.0012018	-0.35544	-0.00022671	637.83427043191	11.341	0.32821	11.341	11.279	11.607	0	561	70	0.948993180460448	0.0465227050214623	0.948993180460448	384.220357054882	0	18.8357205326095						870	38	4	NaN	NaN	NaN	6.8199E-06	1	11600	109.88	94.296	1	455360			19062	2294	16077	16545	19062	19062		
TLAQAMLNNAQPDQYEAPDK	20	Unmodified	_TLAQAMLNNAQPDQYEAPDK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1109.52587	2217.0372	1.5235	0.0016903	-0.12928	-0.00014344	1.3942	0.0015469	1110.02687423868	11.518	0.13313	11.518	11.447	11.58	0	123	76	1.24149774378079	0.0496158630468113	1.24149774378079	500.345992923099	0	19.9960881002428						635	16	4	NaN	NaN	NaN	1.7848E-22	1	34864	187.01	157.79	1	125900			19063	2448	16078	16546	19063	19063		
TLAQLNPESSLFIIASK	17	Unmodified	_TLAQLNPESSLFIIASK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.511834	1831.00911	1.8257	0.0016733	1.3213	0.001211	3.147	0.0028843	917.014606939875	17.566	0.25713	17.566	17.504	17.761	0	240	73	1.16393748060522	0.0478902453991759	1.16393748060522	469.703178005685	0	19.3259524968374						1355	30	4	NaN	NaN	NaN	2.4246E-19	1	28011	201.65	176.97	1	1536400			19064	546	16079	16547	19064	19064		
TLATDILMGVLK	12	Oxidation (M)	_TLATDILM(Oxidation (M))GVLK_	TLATDILM(1)GVLK	TLATDILM(120)GVLK	0	1	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.870514	1289.72647	0.55791	0.00036034	-1.5802	-0.0010206	-1.0223	-0.00066025	645.869509892633	18.55	0.11525	18.55	18.515	18.63	0	546	43	0.959108205975751	0.0283122781138182	0.959108205975751	388.263732478177	0	11.4613040603149						434	14	4	NaN	NaN	NaN	1.8247E-05	1	12067	121.8	110.44	1	201740			19065	181	16080	16548	19065	19065	38	
TLATLSENNMEAK	13	Unmodified	_TLATLSENNMEAK_			0	0	0	Q9H2W6	Q9H2W6	Q9H2W6	MRPL46	39S ribosomal protein L46, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.350674	1420.68679	1.6371	0.0011645	-0.44912	-0.00031948	1.188	0.00084505	711.350524935208	7.066	0.11538	7.066	7.0214	7.1368	0	450	43	1.02367897599655	0.0281950841620375	1.02367897599655	413.998055748941	0	11.40270563181						315	14	4	NaN	NaN	NaN	0.00019629	1	16109	67.548	53.553	1	89462			19066	2876	16081	16549	19066	19066		
TLAYLLPAIVHINHQPYLER	20	Unmodified	_TLAYLLPAIVHINHQPYLER_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	591.082398	2360.30049	-0.22288	-0.00013174	-1.1989	-0.00070864	-1.4218	-0.00084038	591.332319373281	15.633	0.20392	15.633	15.562	15.766	0	666	40	0.877991458330206	0.0264306247374108	0.877991458330206	707.42169937588	0	21.2958762752259						676	24	5	NaN	NaN	NaN	0.07033	1	36130	1.8479	1.0956	1	233650			19067	2435	16082	16550	19067	19067		
TLAYLLPAIVHINHQPYLER	20	Unmodified	_TLAYLLPAIVHINHQPYLER_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.774105	2360.30049	1.1489	0.00090508	0.033797	2.6625E-05	1.1827	0.00093171	788.108383112844	15.633	0.15073	15.633	15.562	15.712	0	465	67	1.01360860968299	0.0443004570103382	1.01360860968299	612.52063089425	0	26.7706327843472						901	18	5	NaN	NaN	NaN	1.4349E-07	1	36133	74.62	62.941	1	230900			19068	2435	16082	16550	19068	19068		
TLDELGIHLTK	11	Unmodified	_TLDELGIHLTK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.350803	1238.68705	1.7109	0.0010614	0.81953	0.0005084	2.5305	0.0015698	620.351176260887	10.578	0.12412	10.578	10.534	10.658	0	474	28	1.00756305028564	0.0181416924529938	1.00756305028564	408.05712824569	0	7.34727908271992						233	15	4	NaN	NaN	NaN	5.1715E-05	1	10593	113.46	98.311	1	67098			19069	1796	16083	16551	19069	19069		
TLDGGLNVIQLETAVGAAIK	20	Unmodified	_TLDGGLNVIQLETAVGAAIK_			0	0	0	Q16851	Q16851	Q16851	UGP2	UTP--glucose-1-phosphate uridylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	992.059679	1982.10481	1.4669	0.0014552	-0.88344	-0.00087642	0.58342	0.00057878	992.560094652778	19.41	0.070953	19.41	19.383	19.454	0	189	52	1.1977968526266	0.0338129115877068	1.1977968526266	483.089905843421	0	13.6372676546757						271	9	3	NaN	NaN	NaN	6.4029E-06	1	31324	85.742	82.454	1	71033			19070	1912	16084	16552	19070	19070		
TLDGIFSEQVAMGYSHSLVIAR	22	Unmodified	_TLDGIFSEQVAMGYSHSLVIAR_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	798.742253	2393.20493	0.75654	0.00060428	1.6578	0.0013241	2.4143	0.0019284	799.077698615805	16.466	0.11525	16.466	16.431	16.546	0	384	31	1.06790610341098	0.0200755173877298	1.06790610341098	645.280530176352	0	12.1305988065258						172	14	2	NaN	NaN	NaN	0.052546	1	36313	33.5	31.049	1	77179			19071	3151	16085	16553	19071	19071		
TLDLPIYVTR	10	Unmodified	_TLDLPIYVTR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.842613	1189.67067	0.62754	0.00037392	-1.814	-0.0010808	-1.1864	-0.00070693	595.841917539618	14.019	0.20395	14.019	13.939	14.143	0	585	61	0.932794566565362	0.0405246082465108	0.932794566565362	377.947851247748	0	16.419680343788						566	24	3	NaN	NaN	NaN	0.034525	1	9157	55.235	24.642	1	286140			19072	1241	16086	16554	19072	19072		
TLDLSNNQLSEIPAELADCPK	21	Unmodified	_TLDLSNNQLSEIPAELADCPK_			0	0	0	Q8N1G4	Q8N1G4	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1164.57302	2327.13149	0.56631	0.00065951	-1.644	-0.0019145	-1.0777	-0.001255	1165.07276966173	16.129	0.13302	16.129	16.049	16.182	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.361977733893	0	9.56706487370025						406	16	4	NaN	NaN	NaN	7.4544E-06	1	35874	70.638	60.312	1	69021			19073	2241	16087	16555	19073	19073		
TLDQISDADNIPGLLVLK	18	Unmodified	_TLDQISDADNIPGLLVLK_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.03313	1924.05171	1.0034	0.00096631	-0.59247	-0.00057057	0.41093	0.00039574	963.032793442369	17.965	0.079783	17.965	17.929	18.009	0	222	55	1.17589687683038	0.0358732713837995	1.17589687683038	474.356802778324	0	14.4712777575247						396	10	4	NaN	NaN	NaN	4.1111E-10	1	30157	135.24	132.53	1	111840			19074	2072	16088	16556	19074	19074		
TLDQVLEDVDQCCQALSQR	19	Unmodified	_TLDQVLEDVDQCCQALSQR_			0	0	0	O75431	O75431	O75431	MTX2	Metaxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.019458	2277.03654	0.25382	0.00019291	-0.83296	-0.00063306	-0.57914	-0.00044016	760.353077349981	16.44	0.088674	16.44	16.404	16.493	0	534	28	0.967195187796614	0.0181894169559895	0.967195187796614	584.598147007034	0	10.994160828937						247	11	4	NaN	NaN	NaN	1.4709E-10	1	35439	127.62	126.44	1	60698			19075	333	16089	16557	19075	19075		
TLDSWRDEFLIQASPR	16	Unmodified	_TLDSWRDEFLIQASPR_			0	0	1	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.330402	1932.96938	0.12878	8.3103E-05	-0.56249	-0.00036299	-0.43371	-0.00027989	645.664565671511	14.134	0.12415	14.134	14.081	14.205	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	544.777787887028	0	11.0579716647702						227	15	3	NaN	NaN	NaN	0.0042745	1	30386	43.613	35.239	1	57850			19076	1180	16090	16558	19076	19076		
TLDTIQLAFK	10	Unmodified	_TLDTIQLAFK_			0	0	0	Q8NF37	Q8NF37	Q8NF37	LPCAT1	Lysophosphatidylcholine acyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.329339	1148.64412	0.13546	7.7934E-05	-1.8766	-0.0010797	-1.7411	-0.0010017	575.328461540015	13.318	0.12419	13.318	13.274	13.398	0	621	43	0.908462957275599	0.0284065601691176	0.908462957275599	368.239902221557	0	11.5144253877962						268	15	2	NaN	NaN	NaN	0.00058031	1	8039	86.205	52.81	1	166840			19077	2315	16091	16559	19077	19077		
TLEEGHDFIQEFPGSPAFAALTSIAQK	27	Unmodified	_TLEEGHDFIQEFPGSPAFAALTSIAQK_			0	0	0	Q9Y5Y2	Q9Y5Y2	Q9Y5Y2	NUBP2	Cytosolic Fe-S cluster assembly factor NUBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	968.818656	2903.43414	0.78418	0.00075973	-0.97292	-0.00094259	-0.18874	-0.00018286	969.485752215797	19.117	0.14186	19.117	19.029	19.171	0	435	25	1.03374239103424	0.0160959081053016	1.03374239103424	624.003286989908	0	9.71605658422004						341	17	5	NaN	NaN	NaN	1.0482E-06	1	38081	74.152	67.898	1	76452			19078	3446	16092	16560	19078	19078		
TLEGELHDLR	10	Unmodified	_TLEGELHDLR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	394.875293	1181.60405	-1.6269	-0.00064242	-0.19632	-7.7521E-05	-1.8232	-0.00071994	394.875113786709	7.8552	0.17732	7.8552	7.8108	7.9881	0	840	28	0.759569036796863	0.0184488704959693	0.759569036796863	461.672594222592	0	11.2133821808599						298	21	4	NaN	NaN	NaN	0.0041043	1	8919	67.507	53.86	1	116050			19079	493	16093	16561	19079	19079		
TLEGELHDLR	10	Unmodified	_TLEGELHDLR_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.809302	1181.60405	1.9532	0.0011559	0.94371	0.0005585	2.8969	0.0017144	591.809874586462	7.864	0.23058	7.864	7.7842	8.0148	0	540	43	0.963152256458504	0.0283044424712918	0.963152256458504	390.278648672944	0	11.4692349886145						632	27	4	NaN	NaN	NaN	3.6237E-14	1	8922	183.27	142.77	1	356690			19080	493	16093	16561	19080	19080		
TLEHLQLSHDQLLEVK	16	Unmodified	_TLEHLQLSHDQLLEVK_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	476.512546	1902.02108	-0.83219	-0.00039655	1.8251	0.00086966	0.99286	0.00047311	476.764819182983	10.25	0.11529	10.25	10.206	10.321	0	723	28	0.839303037468863	0.0183464663932061	0.839303037468863	677.200651661113	0	14.8030430517997						250	14	4	NaN	NaN	NaN	0.032634	1	29650	32.61	29.322	1	81201			19081	1223	16094	16562	19081	19081		
TLELQGLINDLQR	13	Unmodified	_TLELQGLINDLQR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.950862	1511.83076	-2.6123	-0.0013191	0.37039	0.00018703	-2.2419	-0.0011321	504.950937675009	17.264	0.070966	17.264	17.246	17.317	0	744	22	0.82502364452135	0.0142853496956143	0.82502364452135	500.192232215517	0	8.66086808502814						86	9	2	NaN	NaN	NaN	0.047644	1	18864	33.723	28.572	1	20821			19082	718	16095	16563	19082	19082		
TLELQGLINDLQR	13	Unmodified	_TLELQGLINDLQR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.922655	1511.83076	0.54963	0.00041603	0.92113	0.00069723	1.4708	0.0011133	756.923234141992	17.264	0.15962	17.264	17.202	17.362	0	402	73	1.05585747106793	0.0482344672999115	1.05585747106793	426.76343997542	0	19.4957252795418						508	19	4	NaN	NaN	NaN	4.8398E-08	1	18866	136.94	119.47	1	211930			19083	718	16095	16563	19083	19083		
TLENDEEQEALPSLDK	16	Unmodified	_TLENDEEQEALPSLDK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.93381	1829.85307	2.9641	0.002715	1.8561	0.0017	4.8202	0.004415	916.43660399738	9.8598	0.23054	9.8598	9.7711	10.002	0	291	73	1.12999890578964	0.0479891610535439	1.12999890578964	456.009540750461	0	19.3659614897894						1070	27	4	NaN	NaN	NaN	1.7551E-06	1	27961	115.79	107.42	1	303550			19084	2001	16096	16564	19084	19084		
TLEPICDADPSALAK	15	Unmodified	_TLEPICDADPSALAK_			0	0	0	Q5T8P6	Q5T8P6	Q5T8P6	RBM26	RNA-binding protein 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.897988	1599.78142	2.2343	0.0017894	2.3698	0.001898	4.6041	0.0036874	801.904781520677	10.871	0.21283	10.871	10.782	10.995	0	384	58	1.06790610341098	0.0381250913283928	1.06790610341098	431.41797971152	0	15.4019626113912						705	25	5	NaN	NaN	NaN	0.027036	1	21572	40.224	35.073	1	119360			19085	1995	16097	16565	19085	19085		
TLEQHDNIVTHYK	13	Unmodified	_TLEQHDNIVTHYK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.270483	1596.78962	0.39386	0.00021003	-5.0281	-0.0026813	-4.6342	-0.0024713	533.271112524444	4.2549	0.14188	4.2549	4.2105	4.3524	0	750	49	0.820941264895493	0.0326772198028354	0.820941264895493	497.47719258441	0	19.8018692251359						473	17	6	NaN	NaN	NaN	0.0019819	1	21473	76.255	61.8	1	144450			19086	280	16098	16566	19086	19086		
TLEQHDNIVTHYK	13	Unmodified	_TLEQHDNIVTHYK_			0	0	0	O60763	O60763	O60763	USO1	General vesicular transport factor p115	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.402086	1596.78962	2.5684	0.0020532	-1.48	-0.0011831	1.0884	0.00087007	799.401770829308	4.246	0.053203	4.246	4.2283	4.2815	0	390	25	1.06389100039157	0.0160648436588446	1.06389100039157	429.802864672162	0	6.49005943516818						105	7	3	NaN	NaN	NaN	0.00013075	1	21475	63.908	60.172	1	21255			19087	280	16098	16566	19087	19087		
TLETANCMSSQTK	13	Unmodified	_TLETANCMSSQTK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.831791	1469.64903	2.6812	0.0019729	-2.3319	-0.0017159	0.34927	0.00025701	735.830461278208	3.9711	0.18624	3.9711	3.9179	4.1041	4.4409E-16	501	34	0.98941132619024	0.0222007820488888	0.98941132619024	400.01092478498	0	8.97559500609373						371	22	4	NaN	NaN	NaN	2.6701E-05	1	17563	88.734	80.26	1	83170			19088	1163	16099	16567	19088	19088		
TLETVPLER	9	Unmodified	_TLETVPLER_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.298039	1056.58152	1.3977	0.0007398	-1.8043	-0.000955	-0.40658	-0.0002152	529.298351945447	7.6511	0.26613	7.6511	7.5713	7.8374	0	651	73	0.888155670855968	0.048791637772553	0.888155670855968	360.380332354908	0	19.7978206001507						1297	31	5	NaN	NaN	NaN	1.6961E-08	1	5636	176.75	137.43	1	738960			19089	808	16100	16568	19089	19089		
TLFGFLGK	8	Unmodified	_TLFGFLGK_			0	0	0	Q05519	Q05519	Q05519	SRSF11	Serine/arginine-rich splicing factor 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.757821	881.501089	-2.7964	-0.0012354	-0.63222	-0.00027929	-3.4287	-0.0015146	441.757550765314	15.358	0.21293	15.358	15.313	15.526	0	780	31	0.800512323802183	0.020440313348464	0.800512323802183	325.646589581607	0	8.31507290267723						290	25	3	NaN	NaN	NaN	0.069478	1	2031	26.223	13.67	1	95337			19090	1552	16101	16569	19090	19090		
TLFGLHLSQK	10	Unmodified	_TLFGLHLSQK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.329673	1142.64479	0.90259	0.00051658	2.7085	0.0015502	3.6111	0.0020668	572.331609508776	10.206	0.11528	10.206	10.161	10.277	0	564	37	0.946969335010767	0.0242945584092671	0.946969335010767	383.872112363683	0	9.84826341330495						271	14	3	NaN	NaN	NaN	5.0374E-05	1	7867	127.94	85.87	1	75040			19091	929	16102	16570	19091	19091		
TLFLELIR	8	Unmodified	_TLFLELIR_			0	0	0	Q96GM8	Q96GM8	Q96GM8	TOE1	Target of EGR1 protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.810585	1003.60662	-1.4298	-0.0007189	-0.70879	-0.00035639	-2.1386	-0.0010753	502.810316812892	16.723	0.15073	16.723	16.679	16.83	0	663	31	0.880024865079826	0.0203326589411038	0.880024865079826	357.323542455094	0	8.25583231640553						254	18	3	NaN	NaN	NaN	0.00030777	1	4374	105.04	48.949	1	70737			19092	2545	16103	16571	19092	19092		
TLFPLIEAK	9	Unmodified	_TLFPLIEAK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.310418	1030.60628	0.89769	0.00046349	-2.3038	-0.0011895	-1.4061	-0.00072599	516.309334932623	14.471	0.36357	14.471	14.356	14.719	0	648	76	0.890187667287968	0.0508422629318454	0.890187667287968	361.321945025395	0	20.6365758671921						1382	42	4	NaN	NaN	NaN	0.005248	1	5025	58.916	26.963	1	1134200			19093	674	16104	16572	19093	19093		
TLFQACTDEEAAVVQSCTR	19	Unmodified	_TLFQACTDEEAAVVQSCTR_			0	0	0	Q86Y56	Q86Y56	Q86Y56	DNAAF5	Dynein assembly factor 5, axonemal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.49626	2184.97797	0.61773	0.00067548	0.23833	0.00026061	0.85605	0.00093609	1093.99810108048	11.66	0.053217	11.66	11.633	11.687	0	147	22	1.22562176648663	0.0139000546836063	1.22562176648663	493.992818715116	0	5.60248469895623						108	7	3	NaN	NaN	NaN	0.038749	1	34518	26.21	25.845	1	19365			19094	2192	16105	16573	19094	19094		
TLFQPQTGAYQTLAK	15	Unmodified	_TLFQPQTGAYQTLAK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.943587	1665.87262	2.8264	0.002357	-1.0904	-0.00090934	1.736	0.0014477	833.942254922359	11.234	0.19507	11.234	11.128	11.323	0	333	37	1.10198982404297	0.0240309347429271	1.10198982404297	445.035669869421	0	9.7048293074709						503	23	4	NaN	NaN	NaN	4.2756E-06	1	23518	81.48	62.973	1	132470			19095	1247	16106	16574	19095	19095		
TLFSNIVLSGGSTLFK	16	Unmodified	_TLFSNIVLSGGSTLFK_			0	0	0	P61163	P61163	P61163	ACTR1A	Alpha-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.982051	1682.92432	-0.51966	-0.00029204	-0.93872	-0.00052754	-1.4584	-0.00081959	562.31537637263	18.984	0.044324	18.984	18.967	19.011	0	639	19	0.896281965493857	0.0121860610078076	0.896281965493857	542.893608897352	0	7.3813095582334						58	6	2	NaN	NaN	NaN	0.0014237	1	23993	83.214	78.063	1	15006			19096	1332	16107	16575	19096	19096		
TLFSNIVLSGGSTLFK	16	Unmodified	_TLFSNIVLSGGSTLFK_			0	0	0	P61163	P61163	P61163	ACTR1A	Alpha-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.469438	1682.92432	1.6047	0.0013519	-0.75481	-0.0006359	0.84991	0.00071602	842.468567190913	18.993	0.079787	18.993	18.967	19.046	0	273	100	1.14198628764525	0.065971516649187	1.14198628764525	461.149585194843	0	26.6401951289436						635	10	4	NaN	NaN	NaN	1.9815E-13	1	23996	178.52	170.05	1	178080			19097	1332	16107	16575	19097	19097		
TLFSTHYHSLVEDYSQNVAVR	21	Unmodified	_TLFSTHYHSLVEDYSQNVAVR_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.739789	2465.19754	0.13207	0.00010866	0.56372	0.00046379	0.69579	0.00057245	823.074955181329	11.961	0.079804	11.961	11.926	12.006	0	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	605.061814226271	0	12.1822536442789						222	10	4	NaN	NaN	NaN	5.3492E-08	1	36651	84.58	84.275	1	48316			19098	1218	16108	16576	19098	19098		
TLFSTHYHSLVEDYSQNVAVR	21	Unmodified	_TLFSTHYHSLVEDYSQNVAVR_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	617.306661	2465.19754	-0.56851	-0.00035095	1.7261	0.0010655	1.1576	0.00071457	617.558609287402	11.953	0.070935	11.953	11.926	11.997	0	609	25	0.916577990479294	0.0162255683873757	0.916577990479294	738.328202722797	0	13.0701313691184						126	9	4	NaN	NaN	NaN	0.022924	1	36652	20.966	20.894	1	24610			19099	1218	16108	16576	19099	19099		
TLGDFAAEYAK	11	Unmodified	_TLGDFAAEYAK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.292953	1184.57135	1.5408	0.00091415	1.5502	0.0009197	3.091	0.0018339	593.293937778653	10.383	0.17736	10.383	10.33	10.507	0	552	46	0.955063035883597	0.0303408835335462	0.955063035883597	386.989627403265	0	12.2940651795511						694	21	5	NaN	NaN	NaN	0.00019819	1	8990	104.39	84.161	1	433900			19100	611	16109	16577	19100	19100		
TLGDTGFMPPDK	12	Unmodified	_TLGDTGFMPPDK_			0	0	0	Q96HS1	Q96HS1	Q96HS1	PGAM5	Serine/threonine-protein phosphatase PGAM5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.805371	1277.59619	0.80781	0.00051684	2.553	0.0016334	3.3608	0.0021503	639.806767346951	9.3366	0.21284	9.3366	9.2125	9.4253	0	546	22	0.959108205975751	0.0141531980479981	0.959108205975751	388.302776120754	0	5.73003761075466						189	25	2	NaN	NaN	NaN	0.015929	1	11689	63.212	53.124	1	86966			19101	2551	16110	16578	19101	19101		
TLGEDDPWLDDTAAWIER	18	Unmodified	_TLGEDDPWLDDTAAWIER_			0	0	0	O43290	O43290	O43290	SART1	U4/U6.U5 tri-snRNP-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.98691	2101.95926	1.9447	0.0020458	0.44674	0.00046996	2.3914	0.0025158	1052.48810215619	18.488	0.07986	18.488	18.461	18.541	0	174	37	1.20774045859593	0.023856471005451	1.20774045859593	486.907114983869	0	9.61786565009555						228	10	4	NaN	NaN	NaN	0.00080454	1	33337	54.556	54.037	1	40999			19102	194	16111	16579	19102	19102		
TLGETSANAETEQNK	15	Unmodified	_TLGETSANAETEQNK_			0	0	0	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.873556	1591.73256	2.741	0.0021842	-1.8341	-0.0014616	0.90686	0.00072265	796.872099449479	3.2439	0.088673	3.2439	3.2262	3.3149	0	441	28	1.02971785871157	0.0181141482765854	1.02971785871157	416.008573766178	0	7.31816091736067						147	11	3	NaN	NaN	NaN	1.3572E-12	1	21315	181.44	167.64	1	25856			19103	2005	16112	16580	19103	19103		
TLGHNLLVSELYNQLK	16	Unmodified	_TLGHNLLVSELYNQLK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.675509	1841.0047	0.4354	0.00026763	0.46228	0.00028415	0.89768	0.00055178	615.009920446612	15.313	0.070939	15.313	15.269	15.34	1.7764E-15	573	37	0.940896116921038	0.024301288635538	0.940896116921038	569.517769924278	0	14.7093982652277						240	9	4	NaN	NaN	NaN	0.00014793	1	28267	82.437	82.437	1	79730			19104	1696	16113	16581	19104	19104		
TLGILGLGR	9	Unmodified	_TLGILGLGR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.287277	898.560001	-0.79127	-0.0003563	-1.4876	-0.00066983	-2.2788	-0.0010261	450.286801517526	13.043	0.17736	13.043	12.999	13.176	0	720	31	0.841341816837976	0.0203892128493071	0.841341816837976	342.156303855389	0	8.29187087509661						291	21	3	NaN	NaN	NaN	0.0054324	1	2304	72.492	44.788	1	126470			19105	189	16114	16582	19105	19105		
TLGVDFIDVATK	12	Unmodified	_TLGVDFIDVATK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.850635	1277.68672	0.62385	0.00039917	3.5486	0.0022706	4.1724	0.0026697	639.85302318814	14.79	0.36356	14.79	14.648	15.012	0	543	64	0.961130371139249	0.0424596140677734	0.961130371139249	389.121167161039	0	17.1901076892154						841	42	2	NaN	NaN	NaN	4.9797E-05	1	11703	106	86.747	1	1918400			19106	922	16115	16583	19106	19106		
TLGVDLVALATR	12	Unmodified	_TLGVDLVALATR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.86662	1227.71869	0.21023	0.00012926	-0.3738	-0.00022984	-0.16357	-0.00010058	614.866230605519	15.908	0.16847	15.908	15.854	16.023	0	543	85	0.961130371139249	0.0565697749676675	0.961130371139249	389.290498227897	0	22.9126833810278						514	20	3	NaN	NaN	NaN	0.00050722	1	10245	90.306	66.185	1	170280			19107	867	16116	16584	19107	19107		
TLHEWLQQHGIPGLQGVDTR	20	Unmodified	_TLHEWLQQHGIPGLQGVDTR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.397697	2284.17126	1.3504	0.0010296	-0.72426	-0.00055217	0.62619	0.00047741	762.73151704559	13.806	0.13298	13.806	13.753	13.886	0	573	43	0.940896116921038	0.028347578802108	0.940896116921038	568.691532318414	0	17.1336959910535						579	16	5	NaN	NaN	NaN	1.7972E-07	1	35516	118.64	113.56	1	224600			19108	867	16117	16585	19108	19108		
TLHPDLGTDK	10	Unmodified	_TLHPDLGTDK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	366.192623	1095.55604	0.77345	0.00028323	0.34526	0.00012643	1.1187	0.00040966	366.192956010712	3.8736	0.44337	3.8736	3.8292	4.2726	0	852	49	0.751366682244005	0.0328277263003796	0.751366682244005	457.100116823548	0	19.9710179883674						829	51	4	NaN	NaN	NaN	0.0022219	1	6597	78.816	72.585	1	543860			19109	471	16118	16586	19109	19109		
TLHPDLGTDK	10	Unmodified	_TLHPDLGTDK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.785296	1095.55604	2.8872	0.0015844	0.85951	0.00047168	3.7467	0.0020561	548.785661791775	3.8736	0.5231	3.8736	3.7938	4.3169	-8.8818E-16	633	82	0.900343422309015	0.0548335173161099	0.900343422309015	365.158394105832	0	22.2392018758513						1431	60	5	NaN	NaN	NaN	2.8036E-07	1	6598	158.57	120.24	1	3170600			19110	471	16118	16586	19110	19110		
TLHSDDEGTVLDDSR	15	Unmodified	_TLHSDDEGTVLDDSR_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.376463	1658.73837	3.6805	0.0030562	-3.0426	-0.0025265	0.63793	0.00052973	830.374291782231	5.0351	0.12412	5.0351	4.9997	5.1238	0	375	46	1.07392668217569	0.0301029015491134	1.07392668217569	433.717838755278	0	12.157408524103						344	15	4	NaN	NaN	NaN	5.0736E-07	1	23277	81.48	73.106	1	80449			19111	57	16119	16587	19111	19111		
TLHSDDEGTVLDDSR	15	Unmodified	_TLHSDDEGTVLDDSR_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	553.920067	1658.73837	-0.14571	-8.0709E-05	1.1373	0.00063	0.99164	0.00054929	553.920829394055	5.044	0.10641	5.044	5.0085	5.1149	0	771	31	0.806643990516186	0.0204346260342226	0.806643990516186	488.656427401293	0	12.3790810699214						239	13	4	NaN	NaN	NaN	9.2393E-05	1	23279	75.474	75.474	1	63023			19112	57	16119	16587	19112	19112		
TLHTCLELLR	10	Unmodified	_TLHTCLELLR_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.232424	1254.67544	-2.2347	-0.00093684	-0.42323	-0.00017743	-2.6579	-0.0011143	419.232455207312	9.6026	0.1064	9.6026	9.5583	9.6647	0	801	19	0.78619514174348	0.0122778508671118	0.78619514174348	477.53538271613	0	7.45757370079355						123	13	3	NaN	NaN	NaN	0.0057548	1	11066	65.156	49.574	1	24348			19113	1157	16120	16588	19113	19113		
TLHTCLELLR	10	Unmodified	_TLHTCLELLR_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.344997	1254.67544	1.0256	0.00064443	0.078538	4.9349E-05	1.1041	0.00069378	628.345175740983	9.5849	0.079814	9.5849	9.5583	9.6381	0	513	25	0.981336640919867	0.0161538387666367	0.981336640919867	397.379762303341	0	6.54129107352543						131	10	3	NaN	NaN	NaN	0.030838	1	11067	50.834	43.684	1	29915			19114	1157	16120	16588	19114	19114		
TLHTDILFGLIK	12	Unmodified	_TLHTDILFGLIK_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.606255	1369.79694	-2.1381	-0.00097839	0.27716	0.00012683	-1.8609	-0.00085156	457.606357464002	16.067	0.079814	16.067	16.032	16.111	0	816	22	0.775960037304758	0.0143351345420983	0.775960037304758	470.887797515277	0	8.69921079320056						172	10	3	NaN	NaN	NaN	0.023592	1	14501	39.01	31.859	1	55340			19115	248	16121	16589	19115	19115		
TLHTTASNWLHLIPQTLSHLK	21	Unmodified	_TLHTTASNWLHLIPQTLSHLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	603.585305	2410.31211	-1.0183	-0.0006146	0.28914	0.00017452	-0.72911	-0.00044008	603.836227370972	16.298	0.20392	16.298	16.156	16.36	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	712.249728759171	0	13.1008360972526						289	24	4	NaN	NaN	NaN	0.016678	1	36402	41.284	40.341	1	58290			19116	1737	16122	16590	19116	19116		
TLHYECIVLVK	11	Unmodified	_TLHYECIVLVK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.919846	1373.73771	-2.0319	-0.00093248	-1.3711	-0.00062923	-3.403	-0.0015617	458.919479968007	10.259	0.088689	10.259	10.223	10.312	0	822	19	0.771863999559055	0.0122898254393368	0.771863999559055	468.388737497823	0	7.45781099376063						143	11	3	NaN	NaN	NaN	0.026823	1	14628	43.734	42.09	1	33816			19117	3264	16123	16591	19117	19117		
TLHYECIVLVK	11	Unmodified	_TLHYECIVLVK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.919846	1373.73771	-0.92724	-0.00042553	0.12933	5.9352E-05	-0.79791	-0.00036618	458.9200861882	10.259	0.1596	10.259	10.214	10.374	0	729	37	0.835224628594324	0.0244772608396998	0.835224628594324	506.837737846443	0	14.8534886160505						470	19	5	NaN	NaN	NaN	0.0053132	1	14631	58.426	53.275	1	237430			19118	3264	16123	16591	19118	19118		
TLHYECIVLVK	11	Unmodified	_TLHYECIVLVK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.87613	1373.73771	1.5473	0.0010643	1.7136	0.0011787	3.2609	0.0022431	687.877345594309	10.25	0.15073	10.25	10.206	10.356	0	423	40	1.04178812298108	0.0261468289709272	1.04178812298108	421.460577823227	0	10.577829986004						468	18	5	NaN	NaN	NaN	4.8241E-05	1	14633	72.365	57.91	1	178650			19119	3264	16123	16591	19119	19119		
TLIDDDNPPVSFVK	14	Unmodified	_TLIDDDNPPVSFVK_			0	0	0	P61964	P61964	P61964	WDR5	WD repeat-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.401221	1558.78789	2.0748	0.0016192	-3.2651	-0.0025481	-1.1903	-0.00092889	780.400491260788	12.972	0.31036	12.972	12.786	13.096	-1.7764E-15	414	58	1.04781950764076	0.0381987855157915	1.04781950764076	423.398854846683	0	15.4352175407915						1007	36	5	NaN	NaN	NaN	0.00032946	1	20321	86.838	79.698	1	229760			19120	1357	16124	16592	19120	19120		
TLIEDEIATILK	12	Unmodified	_TLIEDEIATILK_			0	0	0	Q13188	Q13188	Q13188	STK3	Serine/threonine-protein kinase 3;Serine/threonine-protein kinase 3 36kDa subunit;Serine/threonine-protein kinase 3 20kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.8925	1357.77045	-0.27902	-0.0001897	-1.0423	-0.00070865	-1.3213	-0.00089835	679.892177431587	19.179	0.070943	19.179	19.144	19.215	0	489	34	0.997481546940468	0.0221885084340552	0.997481546940468	403.583420710119	0	8.9775236060641						140	9	3	NaN	NaN	NaN	0.0010477	1	14136	66.664	15.83	1	31268			19121	1640	16125	16593	19121	19121		
TLIEFLLR	8	Unmodified	_TLIEFLLR_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.810585	1003.60662	-1.0989	-0.00055256	-0.52648	-0.00026472	-1.6254	-0.00081728	502.810456095822	17.929	0.20393	17.929	17.858	18.062	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	350.7152080559	0	9.09213811796303						403	24	4	NaN	NaN	NaN	0.0012378	1	4375	78.178	39.856	1	162620			19122	880	16126	16594	19122	19122		
TLINELVK	8	Unmodified	_TLINELVK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.286943	928.559333	-0.40023	-0.00018622	-0.67289	-0.00031309	-1.0731	-0.00049931	465.286628627846	11.119	0.15962	11.119	11.057	11.216	0	711	55	0.847456455381371	0.036700593052475	0.847456455381371	344.475367674095	0	14.9181119635455						322	19	3	NaN	NaN	NaN	0.01521	1	2857	62.88	6.8659	1	121300			19123	1737	16127	16595	19123	19123		
TLITFAGMIPYR	12	Unmodified	_TLITFAGMIPYR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.878673	1381.74279	-0.19048	-0.00013179	-0.35365	-0.00024469	-0.54413	-0.00037647	691.878527195562	17.007	0.16845	17.007	16.936	17.105	0	489	46	0.997481546940468	0.0302570607134584	0.997481546940468	403.51284606041	0	12.2399383922025						416	20	3	NaN	NaN	NaN	0.0063732	1	14888	47.561	36.206	1	150010			19124	2239	16128	16596	19124	19124		
TLITFAGMIPYR	12	Unmodified	_TLITFAGMIPYR_			0	0	0	Q8N1F7	Q8N1F7	Q8N1F7	NUP93	Nuclear pore complex protein Nup93	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.878673	1381.74279	0.13314	9.2119E-05	0.33177	0.00022955	0.46491	0.00032166	691.879157897129	17.007	0.088662	17.007	16.963	17.051	0	399	55	1.0578662689527	0.0361708486763277	1.0578662689527	427.940373777227	0	14.6322526359703						335	11	3	NaN	NaN	NaN	0.0021277	1	14889	69.716	51.379	1	67940			19125	2239	16128	16596	19125	19125		
TLITVAHTDGNYLGNSWHEILK	22	Unmodified	_TLITVAHTDGNYLGNSWHEILK_			0	0	0	Q9Y6D5;Q9Y6D6	Q9Y6D5;Q9Y6D6	Q9Y6D5	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.095684	2481.26522	2.467	0.0020429	0.62867	0.0005206	3.0956	0.0025635	828.429762164415	14.249	0.088671	14.249	14.223	14.311	0	327	31	1.10599442759226	0.0200230200251346	1.10599442759226	668.158458710284	0	12.0963992810018						208	11	5	NaN	NaN	NaN	4.0955E-06	1	36735	37.769	37.123	1	42217			19126	3459;3460	16129	16597	19126	19126		
TLIVTHSNQALNQLFEK	17	Unmodified	_TLIVTHSNQALNQLFEK_			0	0	0	O60306	O60306	O60306	AQR	Intron-binding protein aquarius	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.689818	1955.04763	0.36289	0.00023685	0.10666	6.9614E-05	0.46954	0.00030647	653.024220663165	12.618	0.062062	12.618	12.582	12.644	0	591	55	0.928742107665821	0.0364873075787652	0.928742107665821	561.916007163876	0	22.0758830870165						222	8	3	NaN	NaN	NaN	0.055293	1	30800	10.326	7.7789	1	40828			19127	254	16130	16598	19127	19127		
TLIVTHSNQALNQLFEK	17	Unmodified	_TLIVTHSNQALNQLFEK_			0	0	0	O60306	O60306	O60306	AQR	Intron-binding protein aquarius	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.531089	1955.04763	1.2216	0.0011954	0.24036	0.0002352	1.462	0.0014306	978.53197954666	12.618	0.079801	12.618	12.573	12.653	0	153	34	1.22165005014568	0.0218519349767741	1.22165005014568	492.757679977086	0	8.81406977463104						228	10	4	NaN	NaN	NaN	0.001587	1	30801	59.77	55.464	1	43372			19128	254	16130	16598	19128	19128		
TLLDQHGQYPIWMNQR	16	Unmodified	_TLLDQHGQYPIWMNQR_			0	0	0	Q9BRT6	Q9BRT6	Q9BRT6	LLPH	Protein LLP homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.331748	1998.97341	-0.46721	-0.00031178	-0.41619	-0.00027774	-0.88339	-0.00058952	667.66604170831	12.529	0.11529	12.529	12.485	12.6	0	684	34	0.86578508874114	0.0223892235225879	0.86578508874114	523.744118619027	0	13.5440356884087						326	14	4	NaN	NaN	NaN	0.0010565	1	31613	46.358	40.97	1	94325			19129	2715	16131	16599	19129	19129		
TLLEEEYFR	9	Unmodified	_TLLEEEYFR_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.300778	1198.587	0.36968	0.00022192	2.7154	0.0016301	3.0851	0.001852	600.301816006816	11.749	0.13302	11.749	11.704	11.837	0	528	37	0.971237000454584	0.0242441707123356	0.971237000454584	393.490296989015	0	9.82236666167393						333	16	4	NaN	NaN	NaN	0.0021273	1	9418	65.156	58.006	1	86252			19130	1218	16132	16600	19130	19130		
TLLEFLK	7	Unmodified	_TLLEFLK_			0	0	0	Q14232	Q14232	Q14232	EIF2B1	Translation initiation factor eIF-2B subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.265479	862.516405	-2.1024	-0.0009088	-1.7153	-0.00074146	-3.8177	-0.0016503	432.264571401864	14.506	0.16848	14.506	14.453	14.622	0	774	31	0.804600385996946	0.0204374693945948	0.804600385996946	327.420036186419	0	8.31672105208571						245	20	3	NaN	NaN	NaN	0.04646	1	1762	32.128	11.469	1	69625			19131	1738	16133	16601	19131	19131		
TLLEGSGLESIISIIHSSLAEPR	23	Unmodified	_TLLEGSGLESIISIIHSSLAEPR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	808.111111	2421.3115	1.5543	0.0012561	-2.0205	-0.0016328	-0.46617	-0.00037672	808.444068759202	20.102	0.079789	20.102	20.084	20.164	0	378	76	1.07192009927972	0.0501784446971434	1.07192009927972	647.662606486387	0	30.3182133666701						363	10	5	NaN	NaN	NaN	1.3551E-09	1	36448	97.933	88.021	1	206050			19132	1127	16134	16602	19132	19132		
TLLENTAITIGR	12	Unmodified	_TLLENTAITIGR_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.374809	1300.73507	0.30979	0.00020179	0.43323	0.0002822	0.74302	0.00048399	651.375167714625	11.935	0.2483	11.935	11.855	12.103	0	519	46	0.97729762293174	0.0302947379404193	0.97729762293174	395.591634428013	0	12.2627382029925						490	29	4	NaN	NaN	NaN	5.3149E-11	1	12376	131.54	77.108	1	183880			19133	2448	16135	16603	19133	19133		
TLLFTFNVPGSGNTYPK	17	Unmodified	_TLLFTFNVPGSGNTYPK_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.483076	1854.9516	1.0137	0.00094121	0.70179	0.0006516	1.7155	0.0015928	928.482888894805	16.706	0.32807	16.706	16.484	16.812	0	240	64	1.16393748060522	0.0418780448686187	1.16393748060522	469.657598517095	0	16.8981086281022						1250	38	4	NaN	NaN	NaN	0.04975	1	28600	47.915	45.2	1	308600			19134	2468	16136	16604	19134	19134		
TLLLCGYPNVGK	12	Unmodified	_TLLLCGYPNVGK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.86048	1333.70641	0.81694	0.0005456	-0.31793	-0.00021233	0.49901	0.00033327	667.860965772219	11.811	0.20395	11.811	11.713	11.917	0	486	37	0.999498404980629	0.0242006280672292	0.999498404980629	404.472968074844	0	9.79341219040492						556	24	4	NaN	NaN	NaN	0.0043955	1	13402	37.591	30.901	1	191620			19135	2808	16137	16605	19135	19135		
TLLLDGNPFR	10	Unmodified	_TLLLDGNPFR_			0	0	0	Q9H9A6	Q9H9A6	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.319306	1144.62406	0.38961	0.00022337	-6.0807	-0.0034862	-5.6911	-0.0032628	573.318072551772	14.435	0.15961	14.435	14.365	14.524	0	621	43	0.908462957275599	0.028418378530508	0.908462957275599	368.25526233429	0	11.5196963806336						579	19	5	NaN	NaN	NaN	0.0094968	1	7927	48.157	30.762	1	155210			19136	2932	16138	16606	19136	19136		
TLLPHDPTADVFVTPAEEK	19	Unmodified	_TLLPHDPTADVFVTPAEEK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1040.53349	2079.05244	1.3309	0.0013849	-1.4683	-0.0015278	-0.13738	-0.00014295	1041.03444492901	12.6	0.1241	12.6	12.538	12.662	0	150	112	1.22363604450103	0.0734617559896182	1.22363604450103	493.35118585921	0	29.618647305831						1077	15	4	NaN	NaN	NaN	7.1546E-07	1	33013	74.733	70.178	1	245870			19137	2348	16139	16607	19137	19137		
TLLPHDPTADVFVTPAEEK	19	Unmodified	_TLLPHDPTADVFVTPAEEK_			0	0	0	Q8TDN6	Q8TDN6	Q8TDN6	BRIX1	Ribosome biogenesis protein BRX1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.024755	2079.05244	0.81041	0.00056244	-0.52356	-0.00036336	0.28685	0.00019908	694.359001563953	12.591	0.20393	12.591	12.511	12.715	0	594	139	0.926715457081489	0.0930906818033946	0.926715457081489	560.454270658487	0	56.2989100662373						1957	24	5	NaN	NaN	NaN	3.8863E-06	1	33014	137.4	129.44	1	836950			19138	2348	16139	16607	19138	19138		
TLLQGSGCLAGIYLEDTK	18	Unmodified	_TLLQGSGCLAGIYLEDTK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	969.995691	1937.97683	2.1601	0.0020953	1.0838	0.0010513	3.2439	0.0031466	969.996640753891	15.145	0.12416	15.145	15.092	15.216	0	189	94	1.1977968526266	0.0616673519305266	1.1977968526266	483.166386035206	0	24.8753296548544						953	15	5	NaN	NaN	NaN	6.5227E-14	1	30472	130.81	110.52	1	268230			19139	1816	16140	16608	19139	19139		
TLLQVLGGTILESER	15	Unmodified	_TLLQVLGGTILESER_			0	0	0	Q86U38	Q86U38	Q86U38	NOP9	Nucleolar protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.964519	1627.91449	0.99876	0.00081395	-1.7166	-0.001399	-0.71788	-0.00058505	815.464100802286	19.055	0.079787	19.055	19.002	19.082	0	357	55	1.08596037261705	0.0361010836697162	1.08596037261705	438.646566139147	0	14.5821309735832						198	10	3	NaN	NaN	NaN	0.0039313	1	22419	51.569	38.987	1	38679			19140	2160	16141	16609	19140	19140		
TLLSDPTYR	9	Unmodified	_TLLSDPTYR_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.282389	1064.55022	1.3248	0.00070649	0.53348	0.0002845	1.8583	0.00099099	533.283077188631	7.4294	0.44341	7.4294	7.3142	7.7576	0	639	73	0.896281965493857	0.0487172425859949	0.896281965493857	363.6426408823	0	19.765729349149						773	51	2	NaN	NaN	NaN	0.00036794	1	5830	102.46	63.14	1	754750			19141	934	16142	16610	19141	19141		
TLLTGDGGGEATGSPLAQGK	20	Unmodified	_TLLTGDGGGEATGSPLAQGK_			0	0	0	Q6WCQ1	Q6WCQ1	Q6WCQ1	MPRIP	Myosin phosphatase Rho-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.465612	1828.91667	2.2448	0.002055	-4.1736	-0.0038208	-1.9288	-0.0017658	915.462297162655	9.1149	0.11529	9.1149	9.0706	9.1858	0	300	55	1.12400150285141	0.0359770043374552	1.12400150285141	453.591064484607	0	14.5185283587213						308	14	3	NaN	NaN	NaN	1.0088E-10	1	27940	110.14	104.52	1	65544			19142	2091	16143	16611	19142	19142		
TLLVADPR	8	Unmodified	_TLLVADPR_			0	0	0	P62249	P62249	P62249	RPS16	40S ribosomal protein S16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.763635	883.512717	-1.2729	-0.00056358	1.565	0.00069293	0.29214	0.00012935	442.764308867928	6.986	0.14196	6.986	6.9417	7.0836	0	738	31	0.829104889055312	0.0204033881937532	0.829104889055312	337.266195093374	0	8.29976182019732						208	17	2	NaN	NaN	NaN	0.068587	1	2057	21.275	7.6271	1	52434			19143	1372	16144	16612	19143	19143		
TLLVSTSAVDNNEAQK	16	Unmodified	_TLLVSTSAVDNNEAQK_			0	0	0	Q5T8P6	Q5T8P6	Q5T8P6	RBM26	RNA-binding protein 26	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.436323	1688.85809	2.6648	0.0022529	-0.76389	-0.00064582	1.9009	0.0016071	845.436108548499	7.9793	0.13317	7.9793	7.9438	8.077	-8.8818E-16	354	49	1.08796502040166	0.0320633273286326	1.08796502040166	439.322456207843	0	12.9472358504785						312	16	3	NaN	NaN	NaN	0.0035973	1	24183	40.224	37.553	1	72708			19144	1995	16145	16613	19144	19144		
TLLWTELFR	9	Unmodified	_TLLWTELFR_			0	0	0	O00217	O00217	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.832049	1177.64954	0.24585	0.00014501	-0.76297	-0.00045003	-0.51713	-0.00030502	589.831535011474	18.745	0.14188	18.745	18.71	18.851	0	603	49	0.920633820089869	0.0324421500815294	0.920633820089869	373.064228985808	0	13.1463839831848						470	17	4	NaN	NaN	NaN	0.00099199	1	8832	87.251	61.997	1	201980			19145	62	16146	16614	19145	19145		
TLLYNPFPPTNESDVIR	17	Unmodified	_TLLYNPFPPTNESDVIR_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.509822	1975.00509	1.6654	0.0016462	-0.54099	-0.00053478	1.1244	0.0011115	989.010722701744	15.331	0.16847	15.331	15.269	15.437	0	189	49	1.1977968526266	0.0318348389761491	1.1977968526266	483.101980934539	0	12.8398014558016						433	20	2	NaN	NaN	NaN	0.0043808	1	31205	44.571	33.093	1	192680			19146	2465	16147	16615	19146	19146		
TLMELLNQMDGFDTLHR	17	Unmodified	_TLMELLNQMDGFDTLHR_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.664287	2032.97103	-0.19029	-0.00012914	-0.2612	-0.00017727	-0.45149	-0.00030641	678.99856014322	19.1	0.09751	19.1	19.064	19.162	0	582	40	0.934820374997243	0.0263355149208984	0.934820374997243	565.440853356593	0	15.9294517200718						386	12	5	NaN	NaN	NaN	6.4973E-05	1	32201	54.309	51.403	1	134470			19147	1390	16148	16616	19147	19147		
TLMELLNQMDGFDTLHR	17	Unmodified	_TLMELLNQMDGFDTLHR_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1017.49279	2032.97103	0.31312	0.0003186	1.969	0.0020034	2.2821	0.002322	1017.49554138362	19.1	0.062036	19.1	19.064	19.126	0	162	49	1.21569043230068	0.0317868179326015	1.21569043230068	490.221331942676	0	12.817881765878						222	8	3	NaN	NaN	NaN	0.0016991	1	32202	39.166	37.691	1	42614			19148	1390	16148	16616	19148	19148		
TLMELLNQMDGFDTLHR	17	Oxidation (M)	_TLM(Oxidation (M))ELLNQMDGFDTLHR_	TLM(1)ELLNQMDGFDTLHR	TLM(47)ELLNQM(-47)DGFDTLHR	0	1	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.995925	2048.96595	-0.37464	-0.00025625	0.076264	5.2164E-05	-0.29838	-0.00020409	684.330411925779	17.291	0.079808	17.291	17.255	17.335	0	567	25	0.944945209309785	0.0161941280103991	0.944945209309785	571.534782893626	0	9.79475565925713						232	10	4	NaN	NaN	NaN	0.00014562	1	32518	69.327	67.739	2	57589			19149	1390	16148	16617	19149	19149	496	
TLMNLGGLAVAR	12	Unmodified	_TLMNLGGLAVAR_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.34754	1214.68053	1.0368	0.00063072	0.23639	0.00014381	1.2732	0.00077453	608.348361100817	13.478	0.17735	13.478	13.416	13.593	0	534	37	0.967195187796614	0.0242609491796308	0.967195187796614	391.793699969628	0	9.82768231665517						396	21	4	NaN	NaN	NaN	0.0037417	1	9874	61.48	45.898	1	156740			19150	1001	16149	16618	19150	19150		
TLNASDVLSAMEEMEFQR	18	Unmodified	_TLNASDVLSAMEEMEFQR_			0	0	0	Q9NRF9	Q9NRF9	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.987207	2069.93979	0.024705	1.7071E-05	1.1438	0.00079033	1.1685	0.0008074	691.322678583105	19.676	0.035457	19.676	19.658	19.694	0	537	19	0.965173861991602	0.0121287944788335	0.965173861991602	583.72997572998	0	7.33540472403001						66	5	3	NaN	NaN	NaN	0.061916	1	32874	32.61	31.515	1	11082			19151	3017	16150	16619	19151	19151		
TLNASDVLSAMEEMEFQR	18	Unmodified	_TLNASDVLSAMEEMEFQR_			0	0	0	Q9NRF9	Q9NRF9	Q9NRF9	POLE3	DNA polymerase epsilon subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.97717	2069.93979	1.3637	0.0014128	0.12388	0.00012834	1.4876	0.0015411	1036.47925740321	19.676	0.070937	19.676	19.649	19.72	0	204	49	1.18784641916898	0.0318610781524282	1.18784641916898	478.935343997536	0	12.8462705100724						319	9	5	NaN	NaN	NaN	6.4905E-19	1	32875	139.7	134.36	1	72699			19152	3017	16150	16619	19152	19152		
TLNDELEIIEGMK	13	Unmodified	_TLNDELEIIEGMK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.881807	1503.74906	1.7999	0.0013551	1.6675	0.0012555	3.4675	0.0026106	752.883021793882	16.094	0.38129	16.094	16.014	16.395	0	420	109	1.04379886199097	0.0723617469260598	1.04379886199097	421.910078458017	0	29.2490741604173						1978	44	4	NaN	NaN	NaN	1.1895E-16	1	18629	181.87	149.73	1	4440800			19153	635	16151	16620	19153	19153		
TLNDELEIIEGMK	13	Oxidation (M)	_TLNDELEIIEGM(Oxidation (M))K_	TLNDELEIIEGM(1)K	TLNDELEIIEGM(67)K	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.588601	1519.74397	-1.8566	-0.00094241	-0.78939	-0.00040068	-2.646	-0.0013431	507.588186513657	13.832	0.088654	13.832	13.806	13.895	0	786	25	0.796423123669906	0.0163568017170922	0.796423123669906	482.82964114254	0	9.9162724795226						144	11	3	NaN	NaN	NaN	0.0054718	1	19127	66.664	62.137	1	29430			19154	635	16151	16621	19154	19154	184	
TLNDELEIIEGMK	13	Oxidation (M)	_TLNDELEIIEGM(Oxidation (M))K_	TLNDELEIIEGM(1)K	TLNDELEIIEGM(250)K	0	1	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.879264	1519.74397	2.6159	0.0019904	-0.26038	-0.00019812	2.3555	0.0017923	760.879356926713	13.841	0.39902	13.841	13.673	14.072	0	420	85	1.04379886199097	0.0562735591105332	1.04379886199097	421.869586294263	0	22.7439442269404						1759	46	5	NaN	NaN	NaN	4.9345E-54	1	19129	248.5	230.16	1	1648700			19155	635	16151	16621	19155	19155	184	
TLNETELTELQSQISDTSVVLSMDNSR	27	Unmodified	_TLNETELTELQSQISDTSVVLSMDNSR_			0	0	0	P08729;CON__Q3KNV1;CON__P08729	P08729	P08729	KRT7	Keratin, type II cytoskeletal 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1004.15556	3009.44484	0.84962	0.00085316	1.3926	0.0013984	2.2422	0.0022515	1004.49149154706	18.772	0.079806	18.772	18.745	18.825	0	219	31	1.17788915118882	0.0199241144356994	1.17788915118882	710.895896588331	0	12.0248761788829						218	10	5	NaN	NaN	NaN	2.5734E-06	1	38241	75.686	70.82	1	47122		+	19156	39	16152	16622	19156	19156		
TLNEWDSR	8	Unmodified	_TLNEWDSR_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.740888	1019.46722	0.23857	0.00012185	4.5677	0.0023329	4.8062	0.0024547	510.742361622664	5.4697	0.27483	5.4697	5.3632	5.6381	0	699	40	0.85560534332665	0.0264783729728815	0.85560534332665	347.335159545217	0	10.7489626762679						395	32	4	NaN	NaN	NaN	0.0012515	1	4723	72.038	52.551	1	139050			19157	168	16153	16623	19157	19157		
TLNQLGTPQDSPELR	15	Unmodified	_TLNQLGTPQDSPELR_			0	0	0	O15400	O15400	O15400	STX7	Syntaxin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.931208	1667.84786	2.3305	0.0019458	-2.4308	-0.0020295	-0.10028	-8.373E-05	835.431246440672	8.7334	0.13306	8.7334	8.6891	8.8221	0	372	31	1.07593298845566	0.0200616822933108	1.07593298845566	434.508445656505	0	8.10177816281384						268	16	3	NaN	NaN	NaN	4.1104E-08	1	23580	106.47	92.011	1	84384			19158	173	16154	16624	19158	19158		
TLPAHSDPVSAVHFNR	16	Unmodified	_TLPAHSDPVSAVHFNR_			0	0	0	P61964	P61964	P61964	WDR5	WD repeat-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.44736	1746.88017	2.2487	0.0019663	2.2229	0.0019438	4.4716	0.0039102	874.450585092288	7.0037	0.097613	7.0037	6.9771	7.0747	0	297	28	1.12600091227925	0.0179946865546097	1.12600091227925	454.558477339166	0	7.26432566018246						102	12	2	NaN	NaN	NaN	0.0026268	1	25805	39.702	37.719	1	20925			19159	1357	16155	16625	19159	19159		
TLPGSDWTPNAQFITR	16	Unmodified	_TLPGSDWTPNAQFITR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.45485	1802.89515	2.3998	0.0021657	0.83622	0.00075465	3.236	0.0029203	902.457364724685	13.824	0.23054	13.824	13.708	13.939	0	291	88	1.12999890578964	0.0579669749036662	1.12999890578964	456.060834018676	0	23.3951261232699						912	27	4	NaN	NaN	NaN	0.00012985	1	27290	69.327	54.352	1	311840			19160	1284	16156	16626	19160	19160		
TLPGWNTDISNAR	13	Unmodified	_TLPGWNTDISNAR_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.862597	1443.71064	1.9872	0.0014365	1.2105	0.00087503	3.1977	0.0023115	722.863392436597	10.498	0.20396	10.498	10.427	10.631	0	447	40	1.02569221487577	0.0261757253352226	1.02569221487577	414.748459980695	0	10.584404964969						551	24	4	NaN	NaN	NaN	0.006265	1	16776	28.328	22.462	1	209340			19161	911	16157	16627	19161	19161		
TLQALQIPAAK	11	Unmodified	_TLQALQIPAAK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.350606	1152.68666	0.70693	0.00040815	1.1607	0.00067011	1.8676	0.0010783	577.351692284115	10.01	0.12415	10.01	9.975	10.099	0	603	55	0.920633820089869	0.0364974218210178	0.920633820089869	373.157748027742	0	14.7933906384409						285	15	2	NaN	NaN	NaN	0.00016792	1	8149	99.855	85.32	1	109370			19162	1095	16158	16628	19162	19162		
TLQEEVMEAMGIK	13	Unmodified	_TLQEEVMEAMGIK_			0	0	0	Q96A35	Q96A35	Q96A35	MRPL24	39S ribosomal protein L24, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.865102	1477.71565	0.17152	0.0001269	1.5395	0.001139	1.711	0.0012659	739.866088107472	17.991	0.088664	17.991	17.965	18.053	0	462	73	1.01562323939346	0.0483144301180574	1.01562323939346	410.587265844472	0	19.5321345490813						325	11	3	NaN	NaN	NaN	0.00045979	1	17816	57.003	48.529	1	58763			19163	2469	16159	16629	19163	19163		
TLQEQLENGPNTQLAR	16	Unmodified	_TLQEQLENGPNTQLAR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.465946	1810.91734	1.4843	0.0013455	-1.7789	-0.0016125	-0.29458	-0.00026703	906.463206586582	9.3366	0.16844	9.3366	9.2303	9.3987	0	309	40	1.11800162319566	0.0259994834338622	1.11800162319566	451.203553144505	0	10.4928821764575						251	20	3	NaN	NaN	NaN	0.00011425	1	27501	62.398	51.426	1	55607			19164	3158	16160	16630	19164	19164		
TLQEQMDELLQQCFLHALK	19	Unmodified	_TLQEQMDELLQQCFLHALK_			0	0	0	P41214	P41214	P41214	EIF2D	Eukaryotic translation initiation factor 2D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.392456	2344.15554	0.74264	0.00058104	-0.21823	-0.00017074	0.52441	0.00041029	782.726283615492	19.791	0.026591	19.791	19.774	19.8	0	453	22	1.02166545906632	0.0140965660785977	1.02166545906632	617.414235107137	0	8.51885564479051						44	4	2	NaN	NaN	NaN	0.012957	1	35989	40.83	38.441	1	12941			19165	1030	16161	16631	19165	19165		
TLQEVTEMDSVK	12	Unmodified	_TLQEVTEMDSVK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.339775	1378.665	1.7432	0.0012034	1.7619	0.0012163	3.5052	0.0024198	690.341504856006	8.4938	0.17733	8.4938	8.4318	8.6091	0	450	43	1.02367897599655	0.0281911902363581	1.02367897599655	414.119684915365	0	11.4044804004152						607	21	5	NaN	NaN	NaN	0.00016397	1	14767	69.641	39.885	1	243330			19166	1298	16162	16632	19166	19166		
TLQIFNIEMK	10	Unmodified	_TLQIFNIEMK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.836474	1235.65839	1.1398	0.00070538	-1.2796	-0.00079187	-0.13977	-8.6496E-05	618.836582985328	15.393	0.19518	15.393	15.331	15.526	0	543	55	0.961130371139249	0.0363964682875382	0.961130371139249	389.262690223105	0	14.7407548295802						625	23	5	NaN	NaN	NaN	4.0453E-05	1	10496	132.39	77.156	1	373160			19167	1503	16163	16633	19167	19167		
TLQIFNIEMK	10	Oxidation (M)	_TLQIFNIEM(Oxidation (M))K_	TLQIFNIEM(1)K	TLQIFNIEM(45)K	0	1	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.833931	1251.65331	0.63889	0.00040048	-2.0914	-0.001311	-1.4525	-0.00091049	626.833389827122	13.07	0.17742	13.07	13.026	13.203	0	555	37	0.953040030838688	0.0242777450705638	0.953040030838688	385.931562720367	0	9.8312219751819						332	21	3	NaN	NaN	NaN	0.018371	1	10967	44.57	33.214	1	108150			19168	1503	16163	16634	19168	19168	531	
TLQLDEDVLCVSYSPNQK	18	Unmodified	_TLQLDEDVLCVSYSPNQK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.01207	2108.00958	2.1308	0.002248	-2.783	-0.002936	-0.65214	-0.00068802	1055.51038534285	14.373	0.11525	14.373	14.302	14.418	0	177	58	1.2057522832638	0.0377597998493286	1.2057522832638	486.096424106955	0	15.2227816082329						440	14	4	NaN	NaN	NaN	1.3624E-06	1	33437	77.431	77.033	1	89305			19169	3308	16164	16635	19169	19169		
TLQLLNDLSIGYSSVR	16	Unmodified	_TLQLLNDLSIGYSSVR_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	889.985983	1777.95741	1.3707	0.0012199	0.10651	9.4794E-05	1.4772	0.0013147	889.986735332828	17.575	0.070937	17.575	17.53	17.601	0	264	31	1.14797626962532	0.0199652358426974	1.14797626962532	463.365994593312	0	8.05871306604712						151	9	3	NaN	NaN	NaN	0.00014321	1	26631	58.508	55.003	1	28340			19170	3235	16165	16636	19170	19170		
TLQQQTFK	8	Unmodified	_TLQQQTFK_			0	0	0	P54725;P54727	P54725;P54727	P54727	RAD23A;RAD23B	UV excision repair protein RAD23 homolog A;UV excision repair protein RAD23 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.271824	992.529095	1.6725	0.00083167	-1.9511	-0.00097023	-0.27863	-0.00013855	497.271150051362	3.8647	0.17733	3.8647	3.8204	3.9977	0	687	22	0.863749705078866	0.0142516439925704	0.863749705078866	350.768145843141	0	5.78758257061753						146	21	2	NaN	NaN	NaN	0.0031851	1	4119	72.492	54.089	1	37747			19171	1256;1255	16166	16637	19171	19171		
TLQQQTFK	8	Unmodified	_TLQQQTFK_			0	0	0	P54725;P54727	P54725;P54727	P54727	RAD23A;RAD23B	UV excision repair protein RAD23 homolog A;UV excision repair protein RAD23 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.271824	992.529095	1.8533	0.00092161	-0.7298	-0.00036291	1.1235	0.0005587	497.271751222603	3.7672	0.18625	3.7672	3.7051	3.8914	0	687	46	0.863749705078866	0.0305265242845556	0.863749705078866	350.768139975102	0	12.396799767614						392	22	3	NaN	NaN	NaN	0.0097287	1	4121	65.313	55.234	1	171070			19172	1256;1255	16166	16637	19172	19172		
TLQSLLTPQPPLLK	14	Unmodified	_TLQSLLTPQPPLLK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.971616	1547.92868	1.6239	0.0012585	0.74686	0.0005788	2.3707	0.0018373	774.971846516385	15.721	0.18622	15.721	15.642	15.828	0	348	37	1.09197348738011	0.0240541201161169	1.09197348738011	441.267661126729	0	9.72029581923857						357	22	3	NaN	NaN	NaN	0.00060918	1	19985	61.577	41.242	1	77879			19173	2422	16167	16638	19173	19173		
TLQTISLLGYMK	12	Unmodified	_TLQTISLLGYMK_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.383788	1366.75302	1.3439	0.00091973	-0.47893	-0.00032777	0.86495	0.00059196	684.383427344947	15.792	0.12415	15.792	15.73	15.854	0	423	100	1.04178812298108	0.0664186234580277	1.04178812298108	421.482045792478	0	26.8713538542792						613	15	3	NaN	NaN	NaN	0.00045793	1	14411	78.932	56.888	1	162440			19174	251	16168	16639	19174	19174		
TLQYLSQGNVVFK	13	Unmodified	_TLQYLSQGNVVFK_			0	0	0	P82663	P82663	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.909016	1495.80348	1.2571	0.00094147	0.3572	0.00026751	1.6143	0.001209	748.909562745507	12.29	0.10643	12.29	12.245	12.352	0	411	34	1.04982941439551	0.0221059271192692	1.04982941439551	424.368227428638	0	8.93578802292609						162	13	2	NaN	NaN	NaN	3.2788E-05	1	18421	69.276	64.748	1	94011			19175	1470	16169	16640	19175	19175		
TLRDPSLPLLELQDIMTSVSGR	22	Unmodified	_TLRDPSLPLLELQDIMTSVSGR_			0	0	1	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.440463	2440.29956	0.43489	0.00035419	-1.0634	-0.00086606	-0.62849	-0.00051187	814.773745503043	20.004	0.035482	20.004	19.986	20.022	0	498	40	0.991429299781895	0.0262409175570258	0.991429299781895	599.002835584044	0	15.854266187658						122	5	4	NaN	NaN	NaN	2.1508E-08	1	36533	70.337	69.526	1	38152			19176	1625	16170	16641	19176	19176		
TLSDDLDEAAK	11	Unmodified	_TLSDDLDEAAK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.282783	1176.55101	1.8206	0.0010728	0.55293	0.00032583	2.3735	0.0013987	589.282873680645	7.3319	0.15959	7.3319	7.2787	7.4383	0	588	40	0.93076847747433	0.0263391634913087	0.93076847747433	377.175121418769	0	10.6734138814635						282	19	2	NaN	NaN	NaN	0.0074574	1	8779	39.039	29.525	1	153230			19177	2841	16171	16642	19177	19177		
TLSDIFLLFK	10	Unmodified	_TLSDIFLLFK_			0	0	0	O75794	O75794	O75794	CDC123	Cell division cycle protein 123 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.849907	1195.68526	-0.4902	-0.00029356	-0.17865	-0.00010698	-0.66885	-0.00040054	598.849723139372	19.924	0.053219	19.924	19.915	19.969	0	612	46	0.914549654013882	0.0304208382695857	0.914549654013882	370.534036712966	0	12.3251438068455						166	7	3	NaN	NaN	NaN	0.0069463	1	9324	44.82	35.843	1	62854			19178	359	16172	16643	19178	19178		
TLSDYNIQK	9	Unmodified	_TLSDYNIQK_			0	0	0	P62979;P0CG48;P0CG47;P62987	P62979	P62979	RPS27A;UBC;UBB;UBA52	Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a;Polyubiquitin-C;Ubiquitin;Polyubiquitin-B;Ubiquitin;Ubiquitin-60S ribosomal protein L40;Ubiquitin;60S ribosomal protein L40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.279846	1080.54514	1.4579	0.00078916	1.389	0.00075186	2.847	0.001541	541.28028482773	5.4962	0.37246	5.4962	5.3987	5.7711	0	675	115	0.871889544407995	0.0772213551768708	0.871889544407995	353.6791705049	0	31.3245926842307						2044	43	5	NaN	NaN	NaN	3.5556E-06	1	6221	158.61	87.944	1	4856000			19179	1419	16173	16644	19179	19179		
TLSFSSDNIAVLSAAADSIK	20	Unmodified	_TLSFSSDNIAVLSAAADSIK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1005.52313	2009.0317	1.2517	0.0012586	0.99742	0.0010029	2.2491	0.0022616	1005.52444857528	17.672	0.19506	17.672	17.583	17.779	0	171	43	1.20972836110953	0.0278287321419277	1.20972836110953	487.856583037609	0	11.2227096672989						456	23	4	NaN	NaN	NaN	1.7307E-11	1	31798	134.49	120.72	1	105360			19180	3308	16174	16645	19180	19180		
TLSGLEVSMVTAVPGR	16	Unmodified	_TLSGLEVSMVTAVPGR_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.937447	1615.86034	2.2308	0.0018046	0.28186	0.00022801	2.5127	0.0020326	808.937896986409	14.187	0.18622	14.187	14.134	14.32	0	243	55	1.16194328902838	0.0359176733564297	1.16194328902838	469.367500617171	0	14.5089598868362						591	22	5	NaN	NaN	NaN	6.3558E-07	1	22084	128.97	119.23	1	231080			19181	475	16175	16646	19181	19181		
TLSGMESYCVR	11	Unmodified	_TLSGMESYCVR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.79448	1301.57441	1.5855	0.0010334	1.2961	0.00084476	2.8816	0.0018782	651.796054002191	7.5536	0.1862	7.5536	7.5003	7.6865	0	534	46	0.967195187796614	0.0303198952028392	0.967195187796614	391.499702588805	0	12.2728381036274						766	22	5	NaN	NaN	NaN	1.7324E-08	1	12385	158.57	150.92	1	699110			19182	1175	16176	16647	19182	19182		
TLSLDEVYLIDSGAQYK	17	Unmodified	_TLSLDEVYLIDSGAQYK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.988389	1913.96222	1.2348	0.0011829	2.9047	0.0027827	4.1395	0.0039656	958.489648604771	15.952	0.15961	15.952	15.899	16.058	-1.7764E-15	213	67	1.18187287897418	0.0438270504083127	1.18187287897418	476.785505835656	0	17.6804991213176						634	19	4	NaN	NaN	NaN	0.00012824	1	29932	95.138	84.653	1	149490			19183	3005	16177	16648	19183	19183		
TLSLHYFEEPELR	13	Unmodified	_TLSLHYFEEPELR_			0	0	0	Q10570	Q10570	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.278867	1632.81477	-1.7719	-0.00096618	-0.18897	-0.00010304	-1.9609	-0.0010692	545.613304801066	12.6	0.062077	12.6	12.573	12.635	0	756	19	0.816857749704129	0.0122522499294135	0.816857749704129	494.908818865872	0	7.42325887611628						99	8	3	NaN	NaN	NaN	0.0032923	1	22572	55.578	53.099	1	18834			19184	1588	16178	16649	19184	19184		
TLSPGDSFSTFDTPYCR	17	Unmodified	_TLSPGDSFSTFDTPYCR_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.930548	1949.84654	3.2304	0.0031527	-0.54219	-0.00052914	2.6882	0.0026235	976.431321939882	12.901	0.15969	12.901	12.83	12.99	0	255	46	1.15396378101328	0.029933448623392	1.15396378101328	465.464892958145	0	12.0740093307964						577	19	4	NaN	NaN	NaN	5.2698E-05	1	30709	61.042	59.058	1	171840			19185	3001	16179	16650	19185	19185		
TLSQWIAENQDSLGSK	16	Unmodified	_TLSQWIAENQDSLGSK_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.941773	1775.86899	3.014	0.0026793	-2.9498	-0.0026222	0.064256	5.712E-05	889.441515879855	12.848	0.17737	12.848	12.751	12.928	0	312	43	1.11600111266355	0.0280052262882846	1.11600111266355	450.463739865434	0	11.3040559067989						462	21	4	NaN	NaN	NaN	1.0653E-09	1	26570	108.34	91.578	1	141120			19186	956	16180	16651	19186	19186		
TLSSVQNEVQEALQR	15	Unmodified	_TLSSVQNEVQEALQR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.44194	1700.86933	1.9682	0.0016758	2.1552	0.001835	4.1234	0.0035108	851.444595049067	13.265	0.16842	13.265	13.203	13.371	0	321	40	1.10999792833052	0.0260209682813848	1.10999792833052	448.19361510959	0	10.506714963177						536	20	4	NaN	NaN	NaN	1.3687E-06	1	24523	139.7	126.53	1	227600			19187	667	16181	16652	19187	19187		
TLSTIATSTDAASVVHSTDLVVEAIVENLK	30	Unmodified	_TLSTIATSTDAASVVHSTDLVVEAIVENLK_			0	0	0	Q16836	Q16836	Q16836	HADH	Hydroxyacyl-coenzyme A dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1028.88187	3083.62379	1.5393	0.0015838	-0.4461	-0.00045898	1.0932	0.0011248	1029.21557981782	20.164	0.026615	20.164	20.155	20.182	0	267	46	1.14597988355104	0.0299581571070404	1.14597988355104	691.56100580524	0	18.0787582385984						156	4	5	NaN	NaN	NaN	2.4501E-22	1	38331	108.6	107.7	1	74576			19188	1910	16182	16653	19188	19188		
TLSYLLPAIVHINHQPFLER	20	Unmodified	_TLSYLLPAIVHINHQPFLER_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	591.082398	2360.30049	-0.3577	-0.00021143	-0.75102	-0.00044391	-1.1087	-0.00065535	591.33256552823	16.262	0.25715	16.262	16.174	16.431	0	660	43	0.882057989648486	0.0284657258071274	0.882057989648486	710.698212868427	0	22.9356127335689						706	30	6	NaN	NaN	NaN	0.023223	1	36131	9.8729	9.8205	1	343940			19189	743	16183	16654	19189	19189		
TLSYLLPAIVHINHQPFLER	20	Unmodified	_TLSYLLPAIVHINHQPFLER_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.774105	2360.30049	1.0079	0.00079399	-0.12539	-9.878E-05	0.8825	0.00069521	788.108245689032	16.262	0.22167	16.262	16.182	16.404	0	459	67	1.01763759082241	0.0443065760406083	1.01763759082241	614.955332639082	0	26.7743305208799						1378	26	5	NaN	NaN	NaN	1.3747E-07	1	36132	83.061	77.446	1	475020			19190	743	16183	16654	19190	19190		
TLTAAAVSGAQPILSK	16	Unmodified	_TLTAAAVSGAQPILSK_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.44068	1526.86681	2.7198	0.0020791	-0.25685	-0.00019635	2.4629	0.0018828	764.44053588236	10.48	0.11531	10.48	10.436	10.551	0	273	103	1.14198628764525	0.0679846915051281	1.14198628764525	461.534318822738	0	27.4760464496405						866	14	4	NaN	NaN	NaN	1.4303E-26	1	19340	193.34	155.59	1	337230			19191	272	16184	16655	19191	19191		
TLTAVHDAILEDLVFPSEIVGK	22	Unmodified	_TLTAVHDAILEDLVFPSEIVGK_			0	0	0	P62081	P62081	P62081	RPS7	40S ribosomal protein S7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.765052	2366.27333	0.39691	0.00031347	0.40122	0.00031687	0.79813	0.00063034	790.099938621529	19.224	0.097534	19.224	19.171	19.268	0	450	58	1.02367897599655	0.0382515551187681	1.02367897599655	618.596987323761	0	23.1149582161572						300	12	2	NaN	NaN	NaN	0.046756	1	36191	8.7645	8.7645	1	120450			19192	1364	16185	16656	19192	19192		
TLTAVHDAILEDLVFPSEIVGK	22	Unmodified	_TLTAVHDAILEDLVFPSEIVGK_			0	0	0	P62081	P62081	P62081	RPS7	40S ribosomal protein S7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.765052	2366.27333	0.3977	0.00031409	0.50573	0.00039941	0.90343	0.0007135	790.099972519498	19.215	0.24826	19.215	19.135	19.383	0	564	91	0.946969335010767	0.0607364510598223	0.946969335010767	572.242266475849	0	36.7023124479285						2071	29	6	NaN	NaN	NaN	1.0254E-11	1	36192	181.08	166.06	1	1597100			19193	1364	16185	16656	19193	19193		
TLTDEDEADQGGWLAAFWK	19	Unmodified	_TLTDEDEADQGGWLAAFWK_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.99473	2151.97491	1.0044	0.0010817	3.6476	0.0039284	4.652	0.0050101	1077.50046336863	19.383	0.053274	19.383	19.366	19.419	0	153	52	1.22165005014568	0.0337665467151151	1.22165005014568	492.43969305223	0	13.6110892786705						266	7	5	NaN	NaN	NaN	4.384E-05	1	34054	63.766	58.378	1	41987			19194	2841	16186	16657	19194	19194		
TLTDELAALQITGVK	15	Unmodified	_TLTDELAALQITGVK_			0	0	0	Q8NBQ5	Q8NBQ5	Q8NBQ5	HSD17B11	Estradiol 17-beta-dehydrogenase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.945795	1571.87704	0.78419	0.00061711	0.18649	0.00014676	0.97068	0.00076387	786.946067918985	16.768	0.088634	16.768	16.732	16.821	0	327	28	1.10599442759226	0.01801947676188	1.10599442759226	446.873171386772	0	7.28070641806175						194	11	4	NaN	NaN	NaN	7.4287E-07	1	20735	95.656	91.673	1	58905			19195	2293	16187	16658	19195	19195		
TLTEDEIATILQSTLK	16	Unmodified	_TLTEDEIATILQSTLK_			0	0	0	Q13043	Q13043	Q13043	STK4	Serine/threonine-protein kinase 4;Serine/threonine-protein kinase 4 37kDa subunit;Serine/threonine-protein kinase 4 18kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.485482	1774.95641	1.5881	0.001411	-0.23488	-0.00020869	1.3532	0.0012023	888.484962311411	19.712	0.062077	19.712	19.694	19.756	0	300	28	1.12400150285141	0.0179922103479333	1.12400150285141	453.694822496441	0	7.2624214998076						109	8	3	NaN	NaN	NaN	3.0015E-06	1	26546	66.619	59.413	1	20290			19196	1620	16188	16659	19196	19196		
TLTELILDAQEHVK	14	Unmodified	_TLTELILDAQEHVK_			0	0	0	P17480	P17480	P17480	UBTF	Nucleolar transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.44342	1608.87229	1.8834	0.0015169	-0.98788	-0.00079568	0.89549	0.00072126	805.441361052238	14.631	0.11526	14.631	14.577	14.693	0	264	61	1.14797626962532	0.0399524602797869	1.14797626962532	463.742641091397	0	16.1394097931089						375	14	4	NaN	NaN	NaN	8.015E-08	1	21877	117.45	101.83	1	104680			19197	737	16189	16660	19197	19197		
TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK	30	Unmodified	_TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1020.19703	3057.56925	0.93712	0.00095605	1.1149	0.0011374	2.052	0.0020934	1020.53269928713	17.22	0.06205	17.22	17.184	17.246	0	297	37	1.12600091227925	0.0239879650368882	1.12600091227925	679.530364600685	0	14.476498597634						267	8	5	NaN	NaN	NaN	1.2641E-06	1	38301	58.691	54.45	1	53764			19198	1330	16190	16661	19198	19198		
TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK	30	Unmodified	_TLTGTVIDSGDGVTHVIPVAEGYVIGSCIK_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1020.19703	3057.56925	0.58177	0.00059352	1.6296	0.0016625	2.2114	0.0022561	1020.53297412013	17.211	0.19507	17.211	17.087	17.282	0	102	139	1.25537494996371	0.0912245407325936	1.25537494996371	757.606309342343	0	55.0531039574018						1620	23	5	NaN	NaN	NaN	7.548E-07	1	38302	108.39	106.65	1	374070			19199	1330	16190	16661	19199	19199		
TLTIDCVQFQR	11	Unmodified	_TLTIDCVQFQR_			0	0	0	P23786	P23786	P23786	CPT2	Carnitine O-palmitoyltransferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.850644	1379.68673	1.2163	0.00084031	7.9902	0.00552	9.2066	0.0063604	690.85689305923	11.19	0.22172	11.19	11.137	11.358	0	492	43	0.995464410099171	0.0282340678314075	0.995464410099171	402.702762222952	0	11.4217414396215						496	26	4	NaN	NaN	NaN	0.0015227	1	14807	50.834	45.684	1	133440			19200	826	16191	16662	19200	19200		
TLTLVDTGIGMTK	13	Unmodified	_TLTLVDTGIGMTK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.370878	1348.7272	1.9826	0.001339	-0.20861	-0.00014089	1.774	0.0011981	675.371309379235	12.715	0.53205	12.715	12.6	13.132	0	504	88	0.987393073566096	0.0585051140049452	0.987393073566096	399.528590763722	0	23.6729083651021						2280	61	4	NaN	NaN	NaN	0.0013812	1	13864	58.476	0	1	3169200			19201	579	16192	16663	19201	19201		
TLTLVDTGIGMTK	13	Unmodified	_TLTLVDTGIGMTK_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.370878	1348.7272	1.4254	0.00096267	0.67341	0.0004548	2.0988	0.0014175	675.3718099085	12.369	0.29264	12.369	12.245	12.538	0	504	82	0.987393073566096	0.0544552144211901	0.987393073566096	399.528587183778	0	22.0341984007561						1377	34	5	NaN	NaN	NaN	1.3035E-16	1	13865	157.77	0	1	1814100			19202	579	16192	16663	19202	19202		
TLTPAGDLQETFSGMDQVR	19	Unmodified	_TLTPAGDLQETFSGMDQVR_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.49659	2064.97862	1.807	0.0018675	8.2429	0.008519	10.05	0.010387	1034.00617019018	15.074	0.28376	15.074	14.897	15.18	0	210	94	1.18386433251387	0.0616758180341945	1.18386433251387	477.337396855167	0	24.8678616466474						979	33	3	NaN	NaN	NaN	0.0001041	1	32788	49.967	45.895	1	254150			19203	1966	16193	16664	19203	19203		
TLTPDQWAR	9	Unmodified	_TLTPDQWAR_			0	0	0	Q9H3K6	Q9H3K6	Q9H3K6	BOLA2	BolA-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.28018	1086.54581	1.0651	0.00057973	0.13026	7.0899E-05	1.1954	0.00065063	544.279938508852	7.8374	0.25718	7.8374	7.7132	7.9704	0	666	85	0.877991458330206	0.0568999007381249	0.877991458330206	356.129635587008	0	23.079656097502						1085	30	4	NaN	NaN	NaN	0.00099199	1	6377	77.072	50.849	1	452510			19204	2879	16194	16665	19204	19204		
TLTPIIQEYFEHGDTNEVAEMLR	23	Unmodified	_TLTPIIQEYFEHGDTNEVAEMLR_			0	0	0	Q53EL6	Q53EL6	Q53EL6	PDCD4	Programmed cell death protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	902.77417	2705.30068	0.9044	0.00081647	-0.18688	-0.00016871	0.71752	0.00064776	903.10762976385	18.328	0.13298	18.328	18.266	18.399	0	474	76	1.00756305028564	0.0504284586117327	1.00756305028564	608.412854752619	0	30.4510198702112						772	16	5	NaN	NaN	NaN	1.8815E-06	1	37620	56.473	50.638	1	175210			19205	1946	16195	16666	19205	19205		
TLTTMAPYLSTEDVPLAR	18	Unmodified	_TLTTMAPYLSTEDVPLAR_			0	0	0	Q8TEX9	Q8TEX9	Q8TEX9	IPO4	Importin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.011341	1978.00813	1.8017	0.0017837	-0.37162	-0.00036791	1.4301	0.0014158	990.010663406336	15.34	0.16846	15.34	15.278	15.446	-1.7764E-15	195	76	1.19381749893585	0.0497317157481028	1.19381749893585	481.49190412531	0	20.0578551849987						816	19	5	NaN	NaN	NaN	8E-05	1	31254	59.77	56.696	1	285530			19206	2356	16196	16667	19206	19206		
TLTTVQGIADDYDK	14	Unmodified	_TLTTVQGIADDYDK_			0	0	0	P41567;O60739	P41567;O60739	P41567	EIF1;EIF1B	Eukaryotic translation initiation factor 1;Eukaryotic translation initiation factor 1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.380485	1538.74642	2.571	0.0019807	-0.50024	-0.00038537	2.0708	0.0015953	770.380327105491	10.161	0.28374	10.161	10.064	10.347	0	414	61	1.04781950764076	0.0402120243950188	1.04781950764076	423.447393670053	0	16.2505820898547						902	33	4	NaN	NaN	NaN	1.3205E-11	1	19685	147.72	115.17	1	603060			19207	1037;277	16197	16668	19207	19207		
TLVAVERPLDDIIAQLPPPIK	21	Unmodified	_TLVAVERPLDDIIAQLPPPIK_			0	0	1	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	766.785899	2297.33587	0.7222	0.00055377	-0.53241	-0.00040825	0.18979	0.00014553	767.119678689489	18.931	0.18619	18.931	18.851	19.038	0	450	28	1.02367897599655	0.0181241570782431	1.02367897599655	618.70529402748	0	10.9541293677331						385	22	3	NaN	NaN	NaN	8.6657E-06	1	35619	47.844	42.763	1	87735			19208	2465	16198	16669	19208	19208		
TLVEDLFADK	10	Unmodified	_TLVEDLFADK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.803154	1149.59175	-0.50736	-0.00029214	0.37954	0.00021854	-0.12783	-7.3604E-05	575.803291803183	14.781	0.20396	14.781	14.719	14.923	0	618	43	0.910492137470517	0.0284065601691176	0.910492137470517	369.058799167323	0	11.514312483372						600	24	4	NaN	NaN	NaN	0.0030182	1	8059	57.888	25.936	1	293050			19209	350	16199	16670	19209	19209		
TLVEHVGMK	9	Unmodified	_TLVEHVGMK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.276052	1012.53755	1.1725	0.00059476	1.1373	0.00057694	2.3098	0.0011717	507.276916473412	4.4322	0.1241	4.4322	4.3968	4.5209	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	353.978051889183	0	8.25943165346149						198	15	2	NaN	NaN	NaN	0.02572	1	4571	37.722	26.894	1	58594			19210	1842	16200	16671	19210	19210		
TLVLLDNLNVR	11	Unmodified	_TLVLLDNLNVR_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.379894	1268.74524	0.80819	0.00051351	1.4454	0.00091838	2.2536	0.0014319	635.381590659822	15.038	0.15962	15.038	14.985	15.145	0	504	46	0.987393073566096	0.0302779838228682	0.987393073566096	399.783963387318	0	12.2592032495892						462	19	4	NaN	NaN	NaN	0.00069378	1	11484	78.816	58.633	1	172150			19211	1011	16201	16672	19211	19211		
TLVLLMGK	8	Unmodified	_TLVLLMGK_			0	0	0	P07737;CON__P02584	P07737	P07737	PFN1	Profilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	437.775157	873.53576	-3.7313	-0.0016335	0.54339	0.00023788	-3.1879	-0.0013956	437.775565043058	11.961	0.17734	11.961	11.908	12.086	0	774	34	0.804600385996946	0.0224796529754165	0.804600385996946	327.355350688962	0	9.1459497300832						348	21	3	NaN	NaN	NaN	0.058794	1	1921	24.851	5.3635	1	104630			19212	563	16202	16673	19212	19212		
TLVLSNLSYSATEETLQEVFEK	22	Unmodified	_TLVLSNLSYSATEETLQEVFEK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1251.13651	2500.25847	0.59971	0.00075032	-1.1684	-0.0014619	-0.56873	-0.00071156	1251.63713809522	19.871	0.017725	19.871	19.862	19.88	0	63	55	1.28111162701928	0.0356329655820204	1.28111162701928	515.946707520098	0	14.3505927847955						119	3	4	NaN	NaN	NaN	1.1586E-11	1	36827	126.46	123.7	1	19456			19213	764	16203	16674	19213	19213		
TLVLSNLSYSATEETLQEVFEK	22	Unmodified	_TLVLSNLSYSATEETLQEVFEK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	834.426765	2500.25847	2.2166	0.0018496	-0.97635	-0.00081469	1.2403	0.0010349	834.760240492006	19.871	0.11528	19.871	19.853	19.969	0	354	76	1.08796502040166	0.0501507801962666	1.08796502040166	657.238652046789	0	30.2960394472245						433	14	7	NaN	NaN	NaN	1.2123E-38	1	36828	292.56	281.09	1	190910			19214	764	16203	16674	19214	19214		
TLVQILTEPR	10	Unmodified	_TLVQILTEPR_			0	0	0	O76031	O76031	O76031	CLPX	ATP-dependent Clp protease ATP-binding subunit clpX-like, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.348063	1168.68157	1.0471	0.00061291	-0.012799	-7.4919E-06	1.0343	0.00060541	585.348051538312	12.981	0.18619	12.981	12.901	13.088	0	543	37	0.961130371139249	0.024267665443817	0.961130371139249	389.50905909117	0	9.8347485598195						350	22	3	NaN	NaN	NaN	1.1929E-05	1	8587	95.311	54.809	1	96385			19215	379	16204	16675	19215	19215		
TLVQQLYTTLCIEQHQLNK	19	Unmodified	_TLVQQLYTTLCIEQHQLNK_			0	0	0	Q8NE86	Q8NE86	Q8NE86	MCU	Calcium uniporter protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.410615	2329.21002	0.65977	0.00051291	-0.24444	-0.00019003	0.41533	0.00032288	777.744868135645	18.08	0.133	18.08	18.027	18.16	0	471	34	1.00957851518677	0.0221701170870099	1.00957851518677	610.132892738437	0	13.3983810740513						482	16	5	NaN	NaN	NaN	1.2773E-15	1	35893	153.18	142.43	1	181910			19216	2309	16205	16676	19216	19216		
TLVSTVGSMVFNEGEAQR	18	Unmodified	_TLVSTVGSMVFNEGEAQR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.319285	1923.93603	-0.61697	-0.00039629	-0.22465	-0.0001443	-0.84162	-0.00054059	642.31913201319	15.899	0.088703	15.899	15.863	15.952	0	639	31	0.896281965493857	0.0203072864196308	0.896281965493857	542.338420225883	0	12.2878982952966						205	11	3	NaN	NaN	NaN	0.00053743	1	30148	75.5	70.406	1	44952			19217	3158	16206	16677	19217	19217		
TLVSTVGSMVFNEGEAQR	18	Unmodified	_TLVSTVGSMVFNEGEAQR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.97529	1923.93603	1.0866	0.0010464	-0.79789	-0.00076835	0.2887	0.00027801	962.976186829407	15.89	0.1153	15.89	15.854	15.97	0	249	37	1.15795408347545	0.0239385276642174	1.15795408347545	467.118881699258	0	9.65680628585397						344	14	5	NaN	NaN	NaN	1.0285E-06	1	30149	106.97	105.5	1	93761			19218	3158	16206	16677	19218	19218		
TLVTQNSGVEALIHAILR	18	Unmodified	_TLVTQNSGVEALIHAILR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.70558	1934.09491	0.45743	0.00029537	-0.19921	-0.00012863	0.25822	0.00016674	645.705455892675	19.658	0.088658	19.658	19.623	19.712	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	571.762966833304	0	11.0242629688499						236	11	4	NaN	NaN	NaN	3.6612E-05	1	30408	70.806	66.5	1	86022			19219	706	16207	16678	19219	19219		
TLYDFPGNDAEDLPFK	16	Unmodified	_TLYDFPGNDAEDLPFK_			0	0	0	P46109	P46109	P46109	CRKL	Crk-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.433249	1840.85195	1.9881	0.0018319	3.3113	0.0030512	5.2994	0.0048831	921.937727985906	15.642	0.28374	15.642	15.535	15.819	0	276	73	1.13998907770044	0.0479297749286622	1.13998907770044	460.020378090827	0	19.3411266965537						998	33	4	NaN	NaN	NaN	0.025764	1	28244	40.861	23.446	1	211910			19220	1079	16208	16679	19220	19220		
TLYDHVDEVTCLAFHPTEQILASGSR	26	Unmodified	_TLYDHVDEVTCLAFHPTEQILASGSR_			0	0	0	Q05048	Q05048	Q05048	CSTF1	Cleavage stimulation factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	740.611819	2958.41817	0.24081	0.00017834	1.0041	0.00074367	1.2449	0.00092201	740.863258613567	15.828	0.070929	15.828	15.801	15.872	0	531	19	0.969216233931596	0.0121254384381547	0.969216233931596	780.000319516777	0	9.75824127261706						165	9	5	NaN	NaN	NaN	0.0041964	1	38155	21.668	20.933	1	37265			19221	1548	16209	16680	19221	19221		
TLYNNQPIDFLK	12	Unmodified	_TLYNNQPIDFLK_			0	0	0	Q13867	Q13867	Q13867	BLMH	Bleomycin hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.387916	1464.76128	1.3009	0.00095405	1.0791	0.00079143	2.38	0.0017455	733.388700972725	13.7	0.16847	13.7	13.637	13.806	0	417	70	1.04580932352505	0.0462661800803514	1.04580932352505	422.825320402088	0	18.7056205908713						747	20	5	NaN	NaN	NaN	3.9808E-05	1	17420	96.957	90.929	1	262740			19222	1706	16210	16681	19222	19222		
TLYVEEVVPNVIEPSFGLGR	20	Unmodified	_TLYVEEVVPNVIEPSFGLGR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	740.063321	2217.16813	-0.49314	-0.00036495	0.23542	0.00017422	-0.25772	-0.00019073	740.398535371687	18.976	0.062061	18.976	18.949	19.011	0	615	19	0.912521036363781	0.0121725500979557	0.912521036363781	551.641901335713	0	7.35861247308674						112	8	4	NaN	NaN	NaN	0.0024393	1	34865	36.96	36.88	1	19100			19223	1035	16211	16682	19223	19223		
TLYVEEVVPNVIEPSFGLGR	20	Unmodified	_TLYVEEVVPNVIEPSFGLGR_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1109.59134	2217.16813	0.92091	0.0010218	-0.69242	-0.0007683	0.22849	0.00025353	1110.09199492124	18.984	0.133	18.984	18.922	19.055	0	93	82	1.26131825079847	0.0535044108607601	1.26131825079847	508.3338297293	0	21.5632351811628						998	16	5	NaN	NaN	NaN	1.8391E-05	1	34866	69.201	68.258	1	355150			19224	1035	16211	16682	19224	19224		
TLYVHWTDAGQLTPALLHSR	20	Unmodified	_TLYVHWTDAGQLTPALLHSR_			0	0	0	Q8IY67	Q8IY67	Q8IY67	RAVER1	Ribonucleoprotein PTB-binding 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.40256	2278.18585	1.7705	0.0013463	-1.3392	-0.0010184	0.4313	0.00032796	760.399974371659	13.939	0.23054	13.939	13.797	14.028	0	396	37	1.05987478976334	0.0241005916389636	1.05987478976334	640.614173314738	0	14.5669854008305						355	27	3	NaN	NaN	NaN	0.00099587	1	35454	69.224	68.919	1	114180			19225	2219	16212	16683	19225	19225		
TMAAEVLSR	9	Unmodified	_TMAAEVLSR_			0	0	0	Q969V3	Q969V3	Q969V3	NCLN	Nicalin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.257859	976.501166	-0.23798	-0.00011643	-3.8963	-0.0019063	-4.1342	-0.0020227	489.255866488572	6.8796	0.11525	6.8796	6.8353	6.9505	0	741	31	0.827064408645228	0.0204033881937532	0.827064408645228	335.94563164466	0	8.2876606256936						231	14	3	NaN	NaN	NaN	0.015423	1	3764	37.591	29.409	1	50387			19226	2463	16213	16684	19226	19226		
TMAQHEELMK	10	Unmodified	_TMAQHEELMK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.286291	1216.55803	1.7974	0.0010951	0.93011	0.0005667	2.7275	0.0016618	609.28694064685	3.439	0.12426	3.439	3.4124	3.5366	0	573	34	0.940896116921038	0.0222715533643577	0.940896116921038	381.13379931596	0	9.02165669277406						195	15	3	NaN	NaN	NaN	0.004939	1	9913	58.889	39.633	1	42725			19227	667	16214	16685	19227	19227		
TMAVLQIEAEK	11	Unmodified	_TMAVLQIEAEK_			0	0	0	O43674	O43674	O43674	NDUFB5	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.831388	1231.64822	1.2905	0.00079602	-2.0486	-0.0012636	-0.75809	-0.00046761	616.831931523961	10.339	0.25717	10.339	10.25	10.507	0	534	40	0.967195187796614	0.0262845144362098	0.967195187796614	391.733066223125	0	10.6457451031566						336	30	4	NaN	NaN	NaN	0.0024846	1	10371	50.297	34.715	1	66409			19228	217	16215	16686	19228	19228		
TMDLPFLEASTLR	13	Unmodified	_TMDLPFLEASTLR_			0	0	0	P19174	P19174	P19174	PLCG1	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.387059	1492.75957	0.010747	8.0323E-06	1.2007	0.00089736	1.2114	0.00090539	747.388878512651	17.353	0.16848	17.353	17.273	17.442	0	456	25	1.01965166402748	0.0161114741282644	1.01965166402748	412.177301022689	0	6.51279663042453						293	20	3	NaN	NaN	NaN	0.004874	1	18328	60	45.237	1	65962			19229	762	16216	16687	19229	19229		
TMEIFQLLR	9	Unmodified	_TMEIFQLLR_			0	0	0	Q96HR3	Q96HR3	Q96HR3	MED30	Mediator of RNA polymerase II transcription subunit 30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.818084	1149.62162	-0.52429	-0.0003019	-0.50903	-0.00029311	-1.0333	-0.000595	575.817511963939	17.637	0.10639	17.637	17.601	17.708	0	633	25	0.900343422309015	0.0162435754430814	0.900343422309015	364.945011391405	0	6.58416741681697						190	13	3	NaN	NaN	NaN	0.0089454	1	8062	67.464	57.385	1	46524			19230	2550	16217	16688	19230	19230		
TMGVMFTPLTVK	12	Unmodified	_TMGVMFTPLTVK_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.853809	1323.69307	0.67575	0.00044792	0.15318	0.00010154	0.82894	0.00054946	662.853884210469	14.675	0.19512	14.675	14.631	14.826	1.7764E-15	504	97	0.987393073566096	0.0645350759866551	0.987393073566096	399.605226506722	0	26.1178190810446						868	23	4	NaN	NaN	NaN	0.0018989	1	13101	74.849	60.854	1	299750			19231	72	16218	16689	19231	19231		
TMGYSVTAPEDTR	13	Unmodified	_TMGYSVTAPEDTR_			0	0	0	O15305	O15305	O15305	PMM2	Phosphomannomutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.327199	1426.63984	2.0034	0.0014311	-1.2634	-0.00090248	0.74004	0.00052863	714.327558611441	6.7909	0.088669	6.7909	6.7555	6.8441	0	477	43	1.0055473068722	0.0282262646321653	1.0055473068722	406.648856263341	0	11.4148565172531						268	11	3	NaN	NaN	NaN	0.0013812	1	16271	73.655	56.185	1	65659			19232	162	16219	16690	19232	19232		
TMHFGTPTAYEK	12	Unmodified	_TMHFGTPTAYEK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.824095	1381.63364	1.4248	0.00098572	0.79813	0.00055216	2.2229	0.0015379	691.825530985345	6.2411	0.14194	6.2411	6.1791	6.321	0	498	28	0.991429299781895	0.0181567430371361	0.991429299781895	401.064829921628	0	7.34498270297411						264	17	3	NaN	NaN	NaN	0.015442	1	14869	50.09	42.939	1	57449			19233	3005	16220	16691	19233	19233		
TMLDFPQHVSSDK	13	Unmodified	_TMLDFPQHVSSDK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	502.241536	1503.70278	-1.0211	-0.00051283	0.38288	0.0001923	-0.6382	-0.00032053	502.241731515006	8.4938	0.12415	8.4938	8.4495	8.5736	0	762	31	0.812773098473386	0.0204232585244036	0.812773098473386	492.789148732506	0	12.3827427377807						275	15	3	NaN	NaN	NaN	0.003584	1	18619	47.361	42.834	1	75138			19234	2804	16221	16692	19234	19234		
TMLEDLGMDDEGDDDPVPLPNVNAAILK	28	Unmodified	_TMLEDLGMDDEGDDDPVPLPNVNAAILK_			0	0	0	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	999.807099	2996.39947	0.57877	0.00057866	0.32911	0.00032905	0.90788	0.0009077	1000.47579223321	19.339	0.097514	19.339	19.277	19.375	0	432	58	1.035754240522	0.0381987855157915	1.035754240522	625.125203846609	0	23.054719592765						154	12	3	NaN	NaN	NaN	0.023991	1	38219	18.396	18.271	1	30624			19235	1431	16222	16693	19235	19235		
TMLELLNQLDGFDSR	15	Unmodified	_TMLELLNQLDGFDSR_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.435269	1750.85598	1.7592	0.0015418	-0.34908	-0.00030594	1.4101	0.0012358	876.936543120343	19.623	0.097538	19.623	19.587	19.685	0	273	82	1.14198628764525	0.0539692453433218	1.14198628764525	461.003425270364	0	21.7866074502788						568	12	5	NaN	NaN	NaN	3.2966E-17	1	25917	184.43	156.21	1	199790			19236	1368	16223	16694	19236	19236		
TMLELLNQLDGFEATK	16	Unmodified	_TMLELLNQLDGFEATK_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.966402	1821.91825	1.408	0.001284	-0.56679	-0.0005169	0.8412	0.00076715	911.965914124409	19.543	0.12416	19.543	19.516	19.641	0	276	70	1.13998907770044	0.0459295397578781	1.13998907770044	460.056141517562	0	18.535411659654						606	15	4	NaN	NaN	NaN	2.3174E-09	1	27770	135.13	103.71	1	217420			19237	1369	16224	16695	19237	19237		
TMLELLNQLDGFQPNTQVK	19	Unmodified	_TMLELLNQLDGFQPNTQVK_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1095.06718	2188.1198	0.12063	0.0001321	0.40198	0.0004402	0.52261	0.00057229	1095.56931659808	19.206	0.1064	19.206	19.162	19.268	0	144	112	1.22760721615852	0.0733510606084935	1.22760721615852	494.788574878426	0	29.564233792848						1101	13	5	NaN	NaN	NaN	3.3984E-45	1	34553	249.97	226.04	1	278900			19238	746	16225	16696	19238	19238		
TMLELLNQLDGFQPNTQVK	19	Oxidation (M)	_TM(Oxidation (M))LELLNQLDGFQPNTQVK_	TM(1)LELLNQLDGFQPNTQVK	TM(89)LELLNQLDGFQPNTQVK	0	1	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1103.06464	2204.11472	0.38955	0.0004297	-0.036031	-3.9745E-05	0.35352	0.00038995	1103.56569388262	16.564	0.1064	16.564	16.51	16.617	0	102	55	1.25537494996371	0.0356671468883052	1.25537494996371	505.957229600776	0	14.3750286142737						306	13	3	NaN	NaN	NaN	0.00023314	1	34726	88.796	83.18	1	51649			19239	746	16225	16697	19239	19239	246	
TMLESLIADK	10	Unmodified	_TMLESLIADK_			0	0	0	Q7L576;Q96F07	Q7L576	Q7L576	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.799557	1119.58456	0.010439	5.8541E-06	1.1129	0.0006241	1.1233	0.00062995	560.799232465318	13.105	0.29257	13.105	12.99	13.283	0	630	37	0.902373728295776	0.0243619867259138	0.902373728295776	365.884257151044	0	9.87802186214901						391	34	4	NaN	NaN	NaN	0.0043715	1	7254	40.386	27.559	1	105240			19240	2117	16226	16698	19240	19240		
TMLHLTDIQLQDNK	14	Unmodified	_TMLHLTDIQLQDNK_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.290778	1668.85051	-0.32177	-0.00017932	-0.60093	-0.00033489	-0.92271	-0.00051422	557.290126072185	11.039	0.10641	11.039	10.986	11.092	0	726	46	0.837263974740672	0.0305816988053002	0.837263974740672	507.180268657579	0	18.5251422299417						312	13	4	NaN	NaN	NaN	0.0027448	1	23598	63.212	54.837	1	69929			19241	3043	16227	16699	19241	19241		
TMLITHMQDLQEVTQDLHYENFR	23	Unmodified	_TMLITHMQDLQEVTQDLHYENFR_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	954.789826	2861.34765	1.2264	0.001171	1.6445	0.0015702	2.8709	0.0027412	955.460113023204	15.925	0.10643	15.925	15.881	15.987	0	237	52	1.16593139812432	0.0339059282789234	1.16593139812432	703.846572225219	0	20.4682466186485						578	13	6	NaN	NaN	NaN	0.00019463	1	38016	46.823	46.659	1	149310			19242	1792	16228	16700	19242	19242		
TMLITHMQDLQEVTQDLHYENFR	23	Unmodified	_TMLITHMQDLQEVTQDLHYENFR_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	716.344189	2861.34765	0.61174	0.00043822	2.8126	0.0020148	3.4243	0.002453	716.348461634263	15.925	0.15075	15.925	15.881	16.032	0	459	76	1.01763759082241	0.0504145199791161	1.01763759082241	819.098513971993	0	40.5787470607617						554	18	5	NaN	NaN	NaN	2.0018E-09	1	38017	81.373	81.178	1	106930			19243	1792	16228	16700	19243	19243		
TMLYTPQEMK	10	Unmodified	_TMLYTPQEMK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.298867	1240.58318	1.5336	0.00095283	1.3973	0.00086811	2.9309	0.0018209	621.300255271585	8.3608	0.14192	8.3608	8.2987	8.4406	0	555	46	0.953040030838688	0.0303534869943584	0.953040030838688	385.969120190805	0	12.2927771036288						473	17	3	NaN	NaN	NaN	0.00029099	1	10631	90.761	83.115	1	139260			19244	3331	16229	16701	19244	19244		
TMMACGGSIQTSVNALSADVLGR	23	Unmodified	_TMMACGGSIQTSVNALSADVLGR_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1170.06124	2338.10794	0.15048	0.00017607	0.35372	0.00041387	0.5042	0.00058994	1170.56328958732	17.335	0.088678	17.335	17.3	17.388	0	66	49	1.27913350869533	0.0316694077427442	1.27913350869533	515.347607191584	0	12.7592259841934						279	11	4	NaN	NaN	NaN	1.7772E-09	1	35953	90.806	86.734	1	48789			19245	2679	16230	16702	19245	19245		
TMPGGNDHEIFTDPR	15	Unmodified	_TMPGGNDHEIFTDPR_			0	0	0	O15305	O15305	O15305	PMM2	Phosphomannomutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.922866	1685.74677	-1.2203	-0.00068694	1.0356	0.00058299	-0.18467	-0.00010395	563.258637160675	7.3053	0.16847	7.3053	7.2343	7.4028	0	789	22	0.794378096728713	0.0143151894202939	0.794378096728713	481.162079719654	0	8.67084117930011						238	20	3	NaN	NaN	NaN	0.0514	1	24067	34.779	32.796	1	58151			19246	162	16231	16703	19246	19246		
TMPILSPGNTQTLTELELK	19	Unmodified	_TMPILSPGNTQTLTELELK_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.55866	2085.10276	0.81678	0.00085236	-2.7876	-0.0029091	-1.9709	-0.0020567	1044.05772233324	16.51	0.17731	16.51	16.431	16.608	0	129	40	1.23753038177212	0.0257896256378105	1.23753038177212	498.943566851459	0	10.3977793135606						554	21	4	NaN	NaN	NaN	0.00099815	1	33108	59.77	55.699	1	136650			19247	2772	16232	16704	19247	19247		
TMQALEIELQSQLSMK	16	Oxidation (M)	_TMQALEIELQSQLSM(Oxidation (M))K_	TMQALEIELQSQLSM(1)K	TM(-57)QALEIELQSQLSM(57)K	0	1	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.649755	1864.92744	0.021623	1.3464E-05	-1.6004	-0.00099651	-1.5788	-0.00098305	622.983378545543	15.748	0.1419	15.748	15.704	15.845	0	633	28	0.900343422309015	0.0182752899876304	0.900343422309015	544.91929588716	0	11.0608440128918						297	17	4	NaN	NaN	NaN	0.0036825	1	28809	56.938	52.41	2	65874		+	19248	36	16233	16705	19248	19248	16;17	
TMQALEIELQSQLSMK	16	Oxidation (M)	_TMQALEIELQSQLSM(Oxidation (M))K_	TMQALEIELQSQLSM(1)K	TM(-120)QALEIELQSQLSM(120)K	0	1	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.470994	1864.92744	0.91107	0.00085046	0.20233	0.00018887	1.1134	0.0010393	933.471567467506	15.748	0.15961	15.748	15.704	15.863	-1.7764E-15	126	55	1.23951419873743	0.0357307570773582	1.23951419873743	500.133520078456	0	14.4170589819543						497	19	4	NaN	NaN	NaN	1.9131E-08	1	28810	122.2	114.62	2	107550		+	19249	36	16233	16705	19249	19249	16;17	
TMQALEIELQSQLSMK	16	Oxidation (M)	_TM(Oxidation (M))QALEIELQSQLSMK_	TM(1)QALEIELQSQLSMK	TM(78)QALEIELQSQLSM(-78)K	0	1	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.470994	1864.92744	1.734	0.0016187	-0.024093	-2.249E-05	1.7099	0.0015962	933.972131075521	14.356	0.25715	14.356	14.249	14.506	-1.7764E-15	249	40	1.15795408347545	0.0259351883053607	1.15795408347545	467.22470256246	0	10.4646296556978						443	30	4	NaN	NaN	NaN	0.005809	1	28812	77.696	69.329	2	83245		+	19250	36	16233	16705	19250	19250	16;17	
TMQGEGPQLLLSEAVSR	17	Unmodified	_TMQGEGPQLLLSEAVSR_			0	0	0	P46379	P46379	P46379	BAG6	Large proline-rich protein BAG6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.4671	1814.91965	1.4357	0.0013042	1.0633	0.000966	2.499	0.0022703	908.969742310302	14.675	0.29263	14.675	14.471	14.764	0	243	46	1.16194328902838	0.0299128815634933	1.16194328902838	468.929679193256	0	12.0720504070763						566	34	4	NaN	NaN	NaN	7.9599E-07	1	27606	73.345	69.039	1	130810			19251	1081	16234	16706	19251	19251		
TMQGSEVVNVLK	12	Unmodified	_TMQGSEVVNVLK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.84757	1303.68059	1.9897	0.0012989	-2.6837	-0.001752	-0.69402	-0.00045309	652.846197574286	9.709	0.28372	9.709	9.5406	9.8243	0	522	94	0.975277694896658	0.0625572530905663	0.975277694896658	394.764644944564	0	25.321395059303						1021	33	4	NaN	NaN	NaN	3.9808E-05	1	12471	96.957	80.499	1	402400			19252	2370	16235	16707	19252	19252		
TMQNTSDLDTAR	12	Unmodified	_TMQNTSDLDTAR_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.809173	1351.60379	2.4751	0.0016752	-0.64789	-0.0004385	1.8272	0.0012367	676.809286822453	4.042	0.15965	4.042	3.9977	4.1573	0	558	37	0.951016745717027	0.0242777450705638	0.951016745717027	384.801341127432	0	9.82328534673627						345	19	4	NaN	NaN	NaN	0.0035732	1	13923	63.212	54.234	1	75498			19253	706	16236	16708	19253	19253		
TMQTLLSLVR	10	Unmodified	_TMQTLLSLVR_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.336641	1160.65873	0.82759	0.00048111	-4.7455	-0.0027587	-3.9179	-0.0022776	581.334099231388	15.517	0.15075	15.517	15.464	15.615	0	603	67	0.920633820089869	0.0445894277136889	0.920633820089869	373.127471419853	0	18.0718327437102						588	18	4	NaN	NaN	NaN	0.0037639	1	8365	65.404	47.068	1	251320			19254	481	16237	16709	19254	19254		
TMSEVGGSVEDLIAK	15	Unmodified	_TMSEVGGSVEDLIAK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.384713	1534.75487	2.6018	0.0019992	3.5607	0.002736	6.1625	0.0047352	768.388168769378	12.848	0.13302	12.848	12.76	12.893	0	408	43	1.0518390438467	0.0281289969730538	1.0518390438467	425.08162052367	0	11.3678225646412						307	16	4	NaN	NaN	NaN	8.8616E-05	1	19580	86.838	79.281	1	114200			19255	557	16238	16710	19255	19255		
TMVQLFEK	8	Unmodified	_TMVQLFEK_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.265153	994.515753	-0.35526	-0.00017701	-1.4046	-0.00069985	-1.7598	-0.00087686	498.264538776515	10.649	0.18624	10.649	10.587	10.773	0	711	37	0.847456455381371	0.0244534611468455	0.847456455381371	344.142068024817	0	9.93026206361577						320	22	2	NaN	NaN	NaN	0.028599	1	4154	43.734	35.552	1	98213			19256	580	16239	16711	19256	19256		
TMYLLGYIPK	10	Unmodified	_TMYLLGYIPK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.83066	1197.64677	0.14615	8.7663E-05	-1.9844	-0.0011903	-1.8383	-0.0011027	600.330322223603	15.606	0.17732	15.606	15.544	15.721	0	579	31	0.936845902828289	0.0202398580816178	0.936845902828289	379.560381177955	0	8.20011938490018						218	21	3	NaN	NaN	NaN	0.040564	1	9399	36.211	22.216	1	48417			19257	973	16240	16712	19257	19257		
TNADTDGMVK	10	Unmodified	_TNADTDGMVK_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.239864	1050.46517	0.47129	0.00024801	0.78984	0.00041565	1.2611	0.00066365	526.240435074748	2.836	0.17736	2.836	2.8094	2.9868	0	732	37	0.833184998970724	0.0244738587568686	0.833184998970724	338.100603973684	0	9.93131949985411						218	21	2	NaN	NaN	NaN	0.0038918	1	5469	49.16	37.093	1	52740			19258	607	16241	16713	19258	19258		
TNDEVIHGIFK	11	Unmodified	_TNDEVIHGIFK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	424.890944	1271.651	-1.4745	-0.0006265	-1.7938	-0.00076217	-3.2683	-0.0013887	424.890174019132	8.8665	0.13312	8.8665	8.8133	8.9464	0	843	28	0.757518876820989	0.0184514415745468	0.757518876820989	460.050649334331	0	11.2057902941615						245	16	3	NaN	NaN	NaN	0.055737	1	11541	13.274	9.291	1	71547			19259	3437	16242	16714	19259	19259		
TNDEVIHGIFK	11	Unmodified	_TNDEVIHGIFK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.832777	1271.651	1.3956	0.00088876	-2.8162	-0.0017935	-1.4206	-0.0009047	637.332886064426	8.8576	0.29296	8.8576	8.68	8.973	0	516	31	0.979317271586824	0.0201978857694813	0.979317271586824	396.504427357554	0	8.17768803146396						507	34	4	NaN	NaN	NaN	0.037679	1	11543	50.297	46.952	1	112210			19260	3437	16242	16714	19260	19260		
TNDWENIVK	9	Unmodified	_TNDWENIVK_			0	0	0		REV__Q8TE73	REV__Q8TE73			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.77747	1117.54039	1.1693	0.00065452	0.76782	0.00042981	1.9371	0.0010843	559.777816824083	7.9615	0.21284	7.9615	7.8374	8.0502	0	621	40	0.908462957275599	0.0263793478580419	0.908462957275599	368.361444528702	0	10.6962365442552						245	25	2	NaN	NaN	NaN	0.051988	1	7193	34.931	5.8298	1	266180	+		19261	3505	16243	16715	19261	19261		
TNEAQAIETAR	11	Unmodified	_TNEAQAIETAR_			0	0	0	P61088;Q5JXB2	P61088	P61088	UBE2N;UBE2NL	Ubiquitin-conjugating enzyme E2 N;Putative ubiquitin-conjugating enzyme E2 N-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.301841	1202.58913	1.8802	0.0011325	-0.23798	-0.00014333	1.6423	0.00098914	602.30187569718	4.3524	0.2926	4.3524	4.2283	4.5209	0	618	46	0.910492137470517	0.0304292729379168	0.910492137470517	368.865954767935	0	12.3277536984796						786	34	5	NaN	NaN	NaN	2.0582E-24	1	9539	245.4	161.78	1	375030			19262	1328	16244	16716	19262	19262		
TNEGVIEFR	9	Unmodified	_TNEGVIEFR_			0	0	0	Q13247	Q13247	Q13247	SRSF6	Serine/arginine-rich splicing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.772188	1063.52982	0.63224	0.00033684	-0.92214	-0.00049129	-0.28989	-0.00015445	532.771773193715	7.864	0.19507	7.864	7.7842	7.9793	0	693	43	0.85967808974117	0.028505272317873	0.85967808974117	348.795869587279	0	11.5654003103978						492	23	4	NaN	NaN	NaN	0.00074174	1	5813	105.36	74.797	1	219180			19263	1645	16245	16717	19263	19263		
TNEQMHQLVAAYK	13	Unmodified	_TNEQMHQLVAAYK_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.589047	1531.74531	-1.1238	-0.00057494	0.81165	0.00041523	-0.31217	-0.00015971	511.589612437345	6.5693	0.10643	6.5693	6.5338	6.6402	0	810	58	0.78005493425781	0.0388988292110642	0.78005493425781	472.87305677069	0	23.58065754861						371	13	4	NaN	NaN	NaN	0.00081718	1	19485	68.49	54.035	1	84197			19264	573	16246	16718	19264	19264		
TNFMYQVDTLK	11	Unmodified	_TNFMYQVDTLK_			0	0	0	Q32MZ4	Q32MZ4	Q32MZ4	LRRFIP1	Leucine-rich repeat flightless-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.334295	1358.65404	0.89614	0.00060968	2.3558	0.0016028	3.252	0.0022124	680.335857921545	11.731	0.10638	11.731	11.687	11.793	0	474	31	1.00756305028564	0.0201560438819375	1.00756305028564	407.659735274732	0	8.15512985591033						221	13	3	NaN	NaN	NaN	0.00047851	1	14150	99.174	87.156	1	79189			19265	1927	16247	16719	19265	19265		
TNHIGHTGYLNTVTVSPDGSLCASGGK	27	Unmodified	_TNHIGHTGYLNTVTVSPDGSLCASGGK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	915.108324	2742.30314	1.9174	0.0017547	0.40445	0.00037012	2.3219	0.0021248	915.443225280864	8.7156	0.13319	8.7156	8.6623	8.7955	0	462	58	1.01562323939346	0.0382832693843467	1.01562323939346	613.237652051018	0	23.115601651764						822	16	6	NaN	NaN	NaN	1.8428E-10	1	37734	95.052	84.8	1	251810			19266	1435	16248	16720	19266	19266		
TNHIGHTGYLNTVTVSPDGSLCASGGK	27	Unmodified	_TNHIGHTGYLNTVTVSPDGSLCASGGK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	686.583062	2742.30314	1.6088	0.0011046	0.97007	0.00066603	2.5789	0.0017706	686.834898458338	8.7068	0.25737	8.7068	8.6357	8.8931	0	516	49	0.979317271586824	0.0323210938061441	0.979317271586824	788.419808685848	0	26.0207711377001						1123	30	7	NaN	NaN	NaN	1.7949E-15	1	37735	134.24	125.47	1	742350			19267	1435	16248	16720	19267	19267		
TNHIYVSSDDIK	12	Unmodified	_TNHIYVSSDDIK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.343706	1390.67286	2.4736	0.0017225	-2.2576	-0.0015721	0.21595	0.00015038	696.341617399266	5.1149	0.20392	5.1149	5.0529	5.2568	0	489	55	0.997481546940468	0.0363210277631717	0.997481546940468	403.487182563575	0	14.6920704497506						435	24	3	NaN	NaN	NaN	3.3325E-05	1	15164	90.689	69.539	1	116640			19268	2064	16249	16721	19268	19268		
TNHSNIMDDPFIR	13	Unmodified	_TNHSNIMDDPFIR_			0	0	0	P61201	P61201	P61201	COPS2	COP9 signalosome complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.580552	1558.71983	0.062199	3.238E-05	-2.2485	-0.0011705	-2.1863	-0.0011381	520.579364626923	9.8332	0.14187	9.8332	9.7534	9.8952	0	750	28	0.820941264895493	0.0183719873373771	0.820941264895493	497.581515218049	0	11.1354632636997						284	17	3	NaN	NaN	NaN	0.0029748	1	20312	68.49	63.662	1	84860			19269	1333	16250	16722	19269	19269		
TNIIPVLEDAR	11	Unmodified	_TNIIPVLEDAR_			0	0	0	A6NHQ2	A6NHQ2	A6NHQ2	FBLL1	rRNA/tRNA 2-O-methyltransferase fibrillarin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.848427	1239.6823	0.92931	0.00057696	-0.98845	-0.00061367	-0.059132	-3.6712E-05	620.847788278527	12.174	0.1419	12.174	12.121	12.263	0	573	58	0.940896116921038	0.0384584049101124	0.940896116921038	381.054046746081	0	15.5752910006191						437	17	2	NaN	NaN	NaN	0.0048585	1	10617	64.906	0	1	245140			19270	15	16251	16723	19270	19270		
TNISDEESEQATEMLVHNAQNLMQSVK	27	Unmodified	_TNISDEESEQATEMLVHNAQNLMQSVK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1016.14125	3045.40193	1.2861	0.0013069	-0.67767	-0.00068861	0.60847	0.00061829	1016.80891968751	18.967	0.079777	18.967	18.931	19.011	0	375	73	1.07392668217569	0.0481148947733248	1.07392668217569	648.115820301311	0	29.0373868275145						384	10	5	NaN	NaN	NaN	4.6505E-08	1	38282	40.363	39.721	1	76226			19271	753	16252	16724	19271	19271		
TNIVTASVDAINFHDK	16	Unmodified	_TNIVTASVDAINFHDK_			0	0	0	O00154	O00154	O00154	ACOT7	Cytosolic acyl coenzyme A thioester hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.946858	1743.87916	3.1591	0.0027577	-1.3795	-0.0012042	1.7796	0.0015535	872.945702352106	12.884	0.21282	12.884	12.795	13.008	0	195	46	1.19381749893585	0.0298595063040779	1.19381749893585	481.942089651287	0	12.0542318042503						588	25	5	NaN	NaN	NaN	1.9285E-24	1	25715	169.05	157.03	1	220240			19272	53	16253	16725	19272	19272		
TNLANVVLLLK	11	Unmodified	_TNLANVVLLLK_			0	0	0	Q92620	Q92620	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.381906	1196.74926	-0.85103	-0.00051009	-2.9224	-0.0017516	-3.7735	-0.0022617	599.380289574519	16.883	0.097594	16.883	16.839	16.936	0	579	25	0.936845902828289	0.0162053462177963	0.936845902828289	379.563627425363	0	6.56560484017831						122	12	2	NaN	NaN	NaN	0.00088533	1	9371	61.48	54.33	1	32843			19273	2421	16254	16726	19273	19273		
TNLIVNYLPQNMTQDELR	18	Unmodified	_TNLIVNYLPQNMTQDELR_			0	0	0	Q15717	Q15717	Q15717	ELAVL1	ELAV-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.54915	2161.08375	1.0188	0.0011019	1.4326	0.0015494	2.4514	0.0026513	1082.05015654429	15.961	0.19509	15.961	15.872	16.067	0	138	94	1.23157729878518	0.061506826598742	1.23157729878518	496.427893934456	0	24.7923572650482						1660	23	6	NaN	NaN	NaN	9.9584E-07	1	34192	78.888	58.598	1	573000			19274	1864	16255	16727	19274	19274		
TNLLQVCER	9	Unmodified	_TNLLQVCER_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.792598	1131.57064	1.2978	0.00073556	-0.30706	-0.00017404	0.9907	0.00056152	566.792438845489	7.802	0.18625	7.802	7.7487	7.935	0	636	40	0.898312834727904	0.0263976438859336	0.898312834727904	364.190771679497	0	10.7020382273072						422	22	3	NaN	NaN	NaN	0.00010157	1	7577	78.816	59.56	1	122010			19275	753	16256	16728	19275	19275		
TNLVWDEVSGQWR	13	Unmodified	_TNLVWDEVSGQWR_			0	0	0	Q15050	Q15050	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.388979	1588.76341	0.85716	0.00068178	0.66084	0.00052562	1.518	0.0012074	795.389574945983	14.79	0.26604	14.79	14.693	14.959	0	387	94	1.06589869032374	0.0622899894930677	1.06589869032374	430.632652107596	0	25.1657156713524						1113	31	3	NaN	NaN	NaN	0.00014809	1	21237	99.589	81.858	1	388360			19276	1802	16257	16729	19276	19276		
TNMLLELAR	9	Unmodified	_TNMLLELAR_			0	0	0	Q9P0P0	Q9P0P0	Q9P0P0	RNF181	E3 ubiquitin-protein ligase RNF181	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.794609	1059.57467	-0.41152	-0.00021844	-2.2315	-0.0011845	-2.643	-0.0014029	530.792718162157	13.15	0.13302	13.15	13.105	13.238	0	666	31	0.877991458330206	0.0203326589411038	0.877991458330206	356.243129224826	0	8.24993224924492						154	16	2	NaN	NaN	NaN	0.010967	1	5721	47.561	20.614	1	48481			19277	3147	16258	16730	19277	19277		
TNMLLQLDGSTPICEDIGR	19	Unmodified	_TNMLLQLDGSTPICEDIGR_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1067.01937	2132.02419	1.0813	0.0011538	3.0763	0.0032825	4.1576	0.0044363	1067.52651459655	16.049	0.20395	16.049	15.943	16.147	0	135	79	1.23356193185193	0.0516181928902155	1.23356193185193	497.271141201383	0	20.8082278015301						867	24	5	NaN	NaN	NaN	6.5684E-11	1	33766	125.75	109.62	1	197440			19278	335	16259	16731	19278	19278		
TNPTEPVGVVCR	12	Unmodified	_TNPTEPVGVVCR_			0	0	0	Q16222	Q16222	Q16222	UAP1	UDP-N-acetylhexosamine pyrophosphorylase;UDP-N-acetylgalactosamine pyrophosphorylase;UDP-N-acetylglucosamine pyrophosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.834994	1327.65543	1.9652	0.0013065	-3.3759	-0.0022444	-1.4107	-0.00093788	664.832483598235	6.0195	0.15068	6.0195	5.9663	6.117	0	555	46	0.953040030838688	0.0303534869943584	0.953040030838688	385.690419337481	0	12.2839007265063						408	18	3	NaN	NaN	NaN	0.0018256	1	13211	81.099	77.491	1	120570			19279	1880	16260	16732	19279	19279		
TNQELQEINR	10	Unmodified	_TNQELQEINR_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.815116	1243.61568	2.3832	0.0014843	1.3048	0.00081264	3.688	0.0022969	622.81636353264	4.7337	0.28375	4.7337	4.645	4.9287	0	600	64	0.922661313351899	0.0425832821931338	0.922661313351899	373.65609722754	0	17.2452261747283						628	33	4	NaN	NaN	NaN	8.9035E-15	1	10734	225.68	199.23	1	1400000			19280	558	16261	16733	19280	19280		
TNVLGHLQQGGAPTPFDR	18	Unmodified	_TNVLGHLQQGGAPTPFDR_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.662263	1906.96496	0.02936	1.8692E-05	-0.52759	-0.0003359	-0.49823	-0.0003172	636.6617234057	10.401	0.070935	10.401	10.374	10.445	-1.7764E-15	711	43	0.847456455381371	0.0285211140004684	0.847456455381371	512.826847097138	0	17.2591675662865						221	9	3	NaN	NaN	NaN	0.00029635	1	29750	49.485	39.464	1	58783			19281	744	16262	16734	19281	19281		
TNVLYELAQYASEPSEQELLR	21	Unmodified	_TNVLYELAQYASEPSEQELLR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1227.11337	2452.21218	0.075307	9.241E-05	-0.97153	-0.0011922	-0.89623	-0.0010998	1227.61377495649	19.623	0.026619	19.623	19.605	19.632	0	66	37	1.27913350869533	0.0237488006707973	1.27913350869533	515.205876348075	0	9.56547661259674						89	4	3	NaN	NaN	NaN	1.2277E-05	1	36588	69.613	66.868	1	13660			19282	728	16263	16735	19282	19282		
TNVLYELAQYASEPSEQELLR	21	Unmodified	_TNVLYELAQYASEPSEQELLR_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	818.411338	2452.21218	0.14297	0.00011701	1.1223	0.00091849	1.2653	0.0010355	818.746080759015	19.623	0.053217	19.623	19.596	19.649	0	534	46	0.967195187796614	0.0303324855868733	0.967195187796614	584.344966518388	0	18.3258100312305						174	7	4	NaN	NaN	NaN	8.8787E-06	1	36590	62.304	61.926	1	31714			19283	728	16263	16735	19283	19283		
TNVLYELAQYASEPSEQELLRK	22	Unmodified	_TNVLYELAQYASEPSEQELLRK_			0	0	1	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	861.109659	2580.30715	1.221	0.0010515	0.51009	0.00043925	1.7311	0.0014907	861.443849633658	18.027	0.07983	18.027	18	18.08	0	369	31	1.07793901817685	0.0200589169906749	1.07793901817685	651.070285673017	0	12.1154950281866						219	10	4	NaN	NaN	NaN	0.00017467	1	37164	41.188	35.083	1	45962			19284	728	16264	16736	19284	19284		
TNYDIVVR	8	Unmodified	_TNYDIVVR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.263999	978.513445	-0.065148	-3.194E-05	-4.9464	-0.002425	-5.0115	-0.002457	490.260539459296	7.0392	0.15971	7.0392	6.986	7.1457	0	693	34	0.85967808974117	0.0224016640756647	0.85967808974117	349.183028586848	0	9.09908138950118						222	19	3	NaN	NaN	NaN	0.013592	1	3809	49.325	38.497	1	51074			19285	1842	16265	16737	19285	19285		
TNYNDRYDEIR	11	Unmodified	_TNYNDRYDEIR_			0	0	1	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.891783	1457.65352	-0.22471	-0.00010941	1.4135	0.00068822	1.1888	0.00057881	486.892637686928	4.4677	0.18618	4.4677	4.4322	4.6184	0	798	31	0.788241307691771	0.0204602376573505	0.788241307691771	478.052860023988	0	12.4087319878086						308	22	3	NaN	NaN	NaN	0.0041716	1	17171	55.235	48.544	1	137590			19286	1391	16266	16738	19286	19286		
TPAEASSTGQTGPQSAL	17	Unmodified	_TPAEASSTGQTGPQSAL_			0	0	0	Q9Y676	Q9Y676	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.883923	1601.75329	2.0053	0.001608	-1.8428	-0.0014778	0.16242	0.00013025	801.88232583374	6.9949	0.20401	6.9949	6.8796	7.0836	0	426	37	1.03977710643793	0.0241405316442127	1.03977710643793	420.049865269451	0	9.75230845332123						293	24	2	NaN	NaN	NaN	0.0029804	1	21626	69.327	47.965	1	72314			19287	3451	16267	16739	19287	19287		
TPAFAESVTEGDVR	14	Unmodified	_TPAFAESVTEGDVR_			0	0	0	P36957	P36957	P36957	DLST	Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.85972	1477.70489	1.6291	0.0012053	1.1598	0.00085805	2.7888	0.0020634	739.860541188672	8.8665	0.26617	8.8665	8.8044	9.0706	0	450	52	1.02367897599655	0.0342203468041924	1.02367897599655	413.843997893314	0	13.8343030020287						667	31	4	NaN	NaN	NaN	1.4557E-11	1	17815	154.94	135.62	1	259780			19288	996	16268	16740	19288	19288		
TPAGNFVTLEEGK	13	Unmodified	_TPAGNFVTLEEGK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.848624	1361.6827	1.0837	0.00073893	-0.40438	-0.00027573	0.67933	0.0004632	681.848452385757	9.3189	0.26611	9.3189	9.2213	9.4874	0	516	46	0.979317271586824	0.0302905481075687	0.979317271586824	396.222635909401	0	12.2552733036909						720	31	4	NaN	NaN	NaN	1.3896E-24	1	14255	228.28	196.33	1	397070			19289	1067	16269	16741	19289	19289		
TPAILYTYSGLR	12	Unmodified	_TPAILYTYSGLR_			0	0	0	Q8N684	Q8N684	Q8N684	CPSF7	Cleavage and polyadenylation specificity factor subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.871902	1353.72925	0.87586	0.00059372	-0.99951	-0.00067754	-0.12365	-8.382E-05	677.871687196181	12.635	0.11526	12.635	12.582	12.697	0	489	34	0.997481546940468	0.0221823754430851	0.997481546940468	403.595561941003	0	8.97531218456976						236	14	3	NaN	NaN	NaN	0.0042589	1	14020	51.531	44.84	1	64698			19290	2262	16270	16742	19290	19290		
TPAIPTAVNLADSR	14	Unmodified	_TPAIPTAVNLADSR_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.388448	1424.76234	2.1956	0.0015663	-0.19582	-0.00013969	1.9998	0.0014266	713.388395166711	10.862	0.20395	10.862	10.809	11.012	0	447	49	1.02569221487577	0.0322185054318638	1.02569221487577	414.800811944984	0	13.0295053613228						493	24	4	NaN	NaN	NaN	7.0151E-06	1	16236	112.73	107.9	1	212770			19291	3318	16271	16743	19291	19291		
TPALIALR	8	Unmodified	_TPALIALR_			0	0	0	P42330;Q04828;P52895	P42330	P42330	AKR1C3;AKR1C1;AKR1C2	Aldo-keto reductase family 1 member C3;Aldo-keto reductase family 1 member C1;Aldo-keto reductase family 1 member C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.776545	853.538538	-1.2331	-0.0005275	-0.96854	-0.00041432	-2.2017	-0.00094182	427.776098363747	9.8509	0.15957	9.8509	9.7977	9.9573	0	804	25	0.78414869089473	0.0163727478201636	0.78414869089473	319.150066118488	0	6.66374070379982						162	19	3	NaN	NaN	NaN	0.016431	1	1621	63.301	33.991	1	39742			19292	1048	16272	16744	19292	19292		
TPALVFEHVNNTDFK	15	Unmodified	_TPALVFEHVNNTDFK_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.961538	1730.86278	0.53617	0.00030988	0.72033	0.00041632	1.2565	0.0007262	578.29617654767	10.711	0.24825	10.711	10.596	10.844	0	627	70	0.90440375274676	0.0466582355403207	0.90440375274676	547.689321059742	0	28.2553198914901						600	29	5	NaN	NaN	NaN	4.5449E-06	1	25353	128.41	110.68	1	181630			19293	1450	16273	16745	19293	19293		
TPALVNAAVTYSK	13	Unmodified	_TPALVNAAVTYSK_			0	0	0	O75964	O75964	O75964	ATP5L	ATP synthase subunit g, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.86936	1333.72417	2.0142	0.0013453	-0.92029	-0.00061463	1.094	0.00073062	667.869736667578	9.7445	0.34581	9.7445	9.576	9.9218	0	489	82	0.997481546940468	0.0544251194474128	0.997481546940468	403.656741506242	0	22.024534127589						990	40	3	NaN	NaN	NaN	2.2659E-05	1	13405	124.06	97.481	1	406130			19294	375	16274	16746	19294	19294		
TPAQFDADELR	11	Unmodified	_TPAQFDADELR_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.804217	1261.59388	2.1919	0.0013848	3.3154	0.0020947	5.5073	0.0034795	631.806256446281	8.0947	0.39038	8.0947	8.0059	8.3963	0	537	58	0.965173861991602	0.0384158376205809	0.965173861991602	390.811506233217	0	15.5550745362399						1434	45	4	NaN	NaN	NaN	6.4368E-12	1	11261	179.95	161.61	1	2177600			19295	506	16275	16747	19295	19295		
TPAQYDASELK	11	Unmodified	_TPAQYDASELK_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.801143	1221.58773	1.6723	0.0010231	1.6553	0.0010127	3.3277	0.0020359	611.801941634336	5.2745	0.47894	5.2745	5.1681	5.6471	0	585	64	0.932794566565362	0.0425478933681714	0.932794566565362	377.834606038202	0	17.2343054995615						1260	55	5	NaN	NaN	NaN	1.2737E-11	1	10061	179.95	143.74	1	1639200			19296	558	16276	16748	19296	19296		
TPASINATPANINLADLTR	19	Unmodified	_TPASINATPANINLADLTR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.023628	1952.0327	1.713	0.0016737	-0.55848	-0.00054565	1.1546	0.001128	977.022807324957	14.4	0.11527	14.4	14.356	14.471	0	219	40	1.17788915118882	0.0258960141762798	1.17788915118882	475.111712576644	0	10.4453798829744						240	14	3	NaN	NaN	NaN	0.0012948	1	30757	49.097	44.28	1	56585			19297	2107	16277	16749	19297	19297		
TPAVEGLTEAEEEELR	16	Unmodified	_TPAVEGLTEAEEEELR_			0	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.931071	1771.84759	1.7178	0.0015236	0.073411	6.5111E-05	1.7912	0.0015887	887.433049791429	11.695	0.088654	11.695	11.642	11.731	0	264	34	1.14797626962532	0.0219662910275218	1.14797626962532	463.378358973334	0	8.8666500853592						203	11	3	NaN	NaN	NaN	6.9778E-05	1	26462	77.157	71.13	1	43566			19298	199	16278	16750	19298	19298		
TPAVEGLTEAEEEELRAELTK	21	Unmodified	_TPAVEGLTEAEEEELRAELTK_			0	0	1	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	772.391943	2314.154	0.7313	0.00056485	0.89263	0.00068946	1.6239	0.0012543	772.727025361256	14.817	0.26603	14.817	14.701	14.967	0	465	34	1.01360860968299	0.0221639917190946	1.01360860968299	612.592072498093	0	13.3951956330334						983	31	6	NaN	NaN	NaN	4.6026E-29	1	35765	233.92	227.81	1	562850			19299	199	16279	16751	19299	19299		
TPAYIPIR	8	Unmodified	_TPAYIPIR_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.774003	929.533452	-0.11323	-5.274E-05	-0.27221	-0.00012679	-0.38544	-0.00017953	465.774043832128	8.2011	0.18627	8.2011	8.1036	8.2898	0	708	46	0.849494101904619	0.030568952954407	0.849494101904619	345.298355125731	0	12.4255237904616						310	22	2	NaN	NaN	NaN	0.015912	1	2874	49.058	33.56	1	89395			19300	2289	16280	16752	19300	19300		
TPCNAGTFSQPEK	13	Unmodified	_TPCNAGTFSQPEK_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.827366	1435.64018	2.554	0.0018359	-1.7798	-0.0012794	0.77422	0.00055653	718.825496117693	4.1839	0.15961	4.1839	4.1396	4.2992	0	483	64	1.00151498427745	0.0423833273901605	1.00151498427745	404.993782952248	0	17.1390187499077						491	19	4	NaN	NaN	NaN	0.0043234	1	16549	54.199	49.996	1	99306			19301	220	16281	16753	19301	19301		
TPDGQGLSTYK	11	Unmodified	_TPDGQGLSTYK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.788035	1165.56152	1.5693	0.00091616	-2.2091	-0.0012896	-0.63977	-0.00037349	584.287859145471	4.3968	0.25712	4.3968	4.2726	4.5297	0	624	34	0.906433495720521	0.0223209853619647	0.906433495720521	367.354005137871	0	9.04611690769838						286	30	3	NaN	NaN	NaN	0.024386	1	8485	31.425	27.222	1	82763			19302	2013	16282	16754	19302	19302		
TPDQAILWLWK	11	Unmodified	_TPDQAILWLWK_			0	0	0	Q6ZRP7	Q6ZRP7	Q6ZRP7	QSOX2	Sulfhydryl oxidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.876988	1369.73942	-0.18298	-0.0001255	0.84222	0.00057766	0.65924	0.00045216	685.87820855757	18.222	0.079814	18.222	18.195	18.275	0	519	37	0.97729762293174	0.024237464198638	0.97729762293174	395.382126396555	0	9.80567220103342						215	10	3	NaN	NaN	NaN	0.00054833	1	14490	76.85	66.148	1	46921			19303	2099	16283	16755	19303	19303		
TPEELFHPLGADSQV	15	Unmodified	_TPEELFHPLGADSQV_			0	0	0	P11166	P11166	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.401752	1638.78895	2.1895	0.0017963	1.8939	0.0015538	4.0834	0.00335	820.904935388894	13.575	0.26601	13.575	13.478	13.744	0	372	58	1.07593298845566	0.0381198356201773	1.07593298845566	434.571907441202	0	15.3966927815674						832	31	4	NaN	NaN	NaN	0.02563	1	22726	54.27	35.763	1	407980			19304	641	16284	16756	19304	19304		
TPEELLR	7	Unmodified	_TPEELLR_			0	0	0	O43633	O43633	O43633	CHMP2A	Charged multivesicular body protein 2a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.239993	856.465432	-0.44556	-0.00019125	0.30724	0.00013188	-0.13832	-5.9372E-05	429.239867301179	6.1525	0.18623	6.1525	6.0727	6.2589	0	747	43	0.822982596624503	0.0285806380781382	0.822982596624503	334.937431779265	0	11.631747203121						350	22	3	NaN	NaN	NaN	0.012636	1	1654	76.833	18.147	1	92969			19305	213	16285	16757	19305	19305		
TPEITVSIIK	10	Unmodified	_TPEITVSIIK_			0	0	0	Q8TED0	Q8TED0	Q8TED0	UTP15	U3 small nucleolar RNA-associated protein 15 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.831714	1099.64888	0.031008	1.708E-05	-3.9238	-0.0021613	-3.8928	-0.0021443	550.829566802576	11.509	0.12413	11.509	11.447	11.571	0	645	25	0.892219381832517	0.0162458284325523	0.892219381832517	361.846763625228	0	6.58862669924963						187	15	3	NaN	NaN	NaN	0.0013898	1	6720	63.397	46.94	1	61001			19306	2352	16286	16758	19306	19306		
TPELNLDQFHDK	12	Unmodified	_TPELNLDQFHDK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	486.240412	1455.69941	-1.0932	-0.00053157	0.22295	0.00010841	-0.87026	-0.00042316	486.24059645436	9.2656	0.33698	9.2656	9.1947	9.5317	0	786	85	0.796423123669906	0.0572329247499821	0.796423123669906	483.021063901289	0	34.7110818123064						2161	39	6	NaN	NaN	NaN	1.3047E-07	1	17117	195.8	168.85	1	2950900			19307	870	16287	16759	19307	19307		
TPELNLDQFHDK	12	Unmodified	_TPELNLDQFHDK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.85698	1455.69941	1.7758	0.0012943	2.7825	0.0020281	4.5584	0.0033224	728.859049821267	9.2745	0.39907	9.2745	9.1858	9.5849	0	420	79	1.04379886199097	0.0523117394777037	1.04379886199097	422.037056961515	0	21.1510985283088						1582	46	5	NaN	NaN	NaN	3.6071E-07	1	17119	131.54	119.59	1	1154900			19308	870	16287	16759	19308	19308		
TPELTWER	8	Unmodified	_TPELTWER_			0	0	0	O43865;Q96HN2	O43865	O43865	AHCYL1;AHCYL2	Putative adenosylhomocysteinase 2;Putative adenosylhomocysteinase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.261456	1030.50836	0.59698	0.0003082	-0.32606	-0.00016833	0.27091	0.00013986	516.261308545996	8.3076	0.29274	8.3076	8.2277	8.5205	0	699	40	0.85560534332665	0.0264783729728815	0.85560534332665	347.28560875457	0	10.7474292305899						489	34	2	NaN	NaN	NaN	0.0036404	1	5004	67.464	32.533	1	229960			19309	242	16288	16760	19309	19309		
TPEMIIQK	8	Unmodified	_TPEMIIQK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.265153	958.515753	0.25955	0.00012465	-1.6243	-0.0007801	-1.3648	-0.00065545	480.264762179966	6.1081	0.1596	6.1081	6.0195	6.1791	0	735	37	0.831145085810763	0.0244806636319601	0.831145085810763	337.691109704754	0	9.94640118712999						306	19	3	NaN	NaN	NaN	0.00055744	1	3409	108.92	54.868	1	134010			19310	1584	16289	16761	19310	19310		
TPEQCPSVVSLLSESYNPHVR	21	Unmodified	_TPEQCPSVVSLLSESYNPHVR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.393513	2398.15871	1.5117	0.0012099	-0.48819	-0.00039074	1.0235	0.00081918	800.728651283138	14.019	0.21282	14.019	13.93	14.143	0	396	76	1.05987478976334	0.0502061320950493	1.05987478976334	640.419996006837	0	30.3366126134669						810	25	6	NaN	NaN	NaN	2.8064E-11	1	36331	134.49	131.9	1	278740			19311	2641	16290	16762	19311	19311		
TPETLLPFAEAEAFLK	16	Unmodified	_TPETLLPFAEAEAFLK_			0	0	0	Q3KQU3	Q3KQU3	Q3KQU3	MAP7D1	MAP7 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.974553	1775.93455	1.4522	0.0012909	3.3307	0.0029609	4.7829	0.0042519	888.978844509641	19.898	0.035468	19.898	19.889	19.924	0	264	55	1.14797626962532	0.0359473204858849	1.14797626962532	463.370067232186	0	14.5098054298613						133	5	4	NaN	NaN	NaN	0.00070804	1	26575	31.04	27.304	1	26861			19312	1931	16291	16763	19312	19312		
TPFGAYGGLLK	11	Unmodified	_TPFGAYGGLLK_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.310949	1122.60735	1.1998	0.00067464	-0.77386	-0.00043515	0.42591	0.00023949	562.31025464371	12.697	0.21281	12.697	12.635	12.848	0	594	46	0.926715457081489	0.030408192841195	0.926715457081489	375.741768280615	0	12.3291653992169						430	25	3	NaN	NaN	NaN	0.0004547	1	7343	86.205	59.749	1	259130			19313	1056	16292	16764	19313	19313		
TPFLGDMAHIR	11	Unmodified	_TPFLGDMAHIR_			0	0	0	Q9H857	Q9H857	Q9H857	NT5DC2	5-nucleotidase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.885135	1256.63358	-1.6968	-0.00071248	-0.40088	-0.00016832	-2.0977	-0.0008808	419.884972509737	10.525	0.097583	10.525	10.48	10.578	0	846	22	0.755468431110051	0.0143531208129216	0.755468431110051	458.864189801873	0	8.71794621950295						123	12	3	NaN	NaN	NaN	0.002881	1	11109	29.755	27.956	1	24246			19314	2923	16293	16765	19314	19314		
TPFLLSGTSYK	11	Unmodified	_TPFLLSGTSYK_			0	0	0	P55084	P55084	P55084	HADHB	Trifunctional enzyme subunit beta, mitochondrial;3-ketoacyl-CoA thiolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.326796	1212.63904	1.2782	0.00077627	1.1668	0.00070865	2.445	0.0014849	607.828827130902	11.279	0.24833	11.279	11.181	11.429	0	567	88	0.944945209309785	0.0586997044173638	0.944945209309785	382.787861867742	0	23.7786636990346						1205	29	4	NaN	NaN	NaN	1.0902E-05	1	9808	118.91	97.633	1	645370			19315	1267	16294	16766	19315	19315		
TPFLLVGTQIDLR	13	Unmodified	_TPFLLVGTQIDLR_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.927209	1471.83986	0.69233	0.0005102	1.2266	0.0009039	1.9189	0.0014141	736.928141929788	17.105	0.22167	17.105	17.051	17.273	0	378	55	1.07192009927972	0.0361110377354152	1.07192009927972	433.362517374624	0	14.5991946867543						822	26	5	NaN	NaN	NaN	2.1337E-05	1	17652	110.52	97.926	1	353930			19316	1316	16295	16767	19316	19316		
TPFLLVGTQIDLRDDPSTIEK	21	Unmodified	_TPFLLVGTQIDLRDDPSTIEK_			0	0	1	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.756557	2357.24784	1.2257	0.00096432	-0.70652	-0.00055586	0.51917	0.00040846	787.090821537377	15.792	0.079823	15.792	15.766	15.845	0	438	31	1.03173026378327	0.0201226639147589	1.03173026378327	623.476217685512	0	12.160157385832						250	10	4	NaN	NaN	NaN	0.014533	1	36112	13.525	12.099	1	52766			19317	1316	16296	16768	19317	19317		
TPGFSVQSISDFEK	14	Unmodified	_TPGFSVQSISDFEK_			0	0	0	Q9NY61	Q9NY61	Q9NY61	AATF	Protein AATF	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.377746	1540.74094	1.8553	0.0014311	-4.9176	-0.0037934	-3.0624	-0.0023623	771.374267831365	13.451	0.33695	13.451	13.389	13.726	0	426	100	1.03977710643793	0.0663544732688883	1.03977710643793	420.192444943142	0	26.8150242808149						1035	39	4	NaN	NaN	NaN	0.03676	1	19734	55.604	22.178	1	288510			19318	3110	16297	16769	19318	19318		
TPGGVFLNLLK	11	Unmodified	_TPGGVFLNLLK_			0	0	0	Q9H814	Q9H814	Q9H814	PHAX	Phosphorylated adapter RNA export protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.847699	1157.68084	-0.25631	-0.00014862	-1.3519	-0.0007839	-1.6082	-0.00093252	579.846971340009	16.537	0.32806	16.537	16.298	16.626	0	597	31	0.924688525662974	0.0202735302015807	0.924688525662974	374.782125180232	0	8.21699039512401						422	38	3	NaN	NaN	NaN	0.002805	1	8305	67.507	60.817	1	92993			19319	2920	16298	16770	19319	19319		
TPGTWNHITDQIGMFSFTGLNPK	23	Unmodified	_TPGTWNHITDQIGMFSFTGLNPK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.753041	2561.23729	0.96812	0.0008275	-0.40068	-0.00034248	0.56744	0.00048502	855.087374997908	17.69	0.133	17.69	17.628	17.761	0	483	34	1.00151498427745	0.0221854416206791	1.00151498427745	604.934647272774	0	13.4004408442064						426	16	5	NaN	NaN	NaN	1.5586E-06	1	37071	66.913	66.215	1	103730			19320	736	16299	16771	19320	19320		
TPGYVVTPHTMNLLK	15	Unmodified	_TPGYVVTPHTMNLLK_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	557.635997	1669.88616	0.71201	0.00039704	-0.16542	-9.2247E-05	0.54659	0.0003048	557.636241826891	10.844	0.1241	10.844	10.773	10.897	0	621	34	0.908462957275599	0.0223209853619647	0.908462957275599	550.306890828599	0	13.5210708993687						286	15	4	NaN	NaN	NaN	0.035738	1	23626	33.751	27.723	1	65147			19321	1101	16300	16772	19321	19321		
TPIAAGHPSMNLLLR	15	Unmodified	_TPIAAGHPSMNLLLR_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.964337	1589.87118	0.71882	0.00038167	-1.7332	-0.00092027	-1.0144	-0.0005386	531.296185551326	11.092	0.1685	11.092	11.012	11.181	0	645	37	0.892219381832517	0.0243822699655701	0.892219381832517	540.69077457128	0	14.7758148970191						384	20	4	NaN	NaN	NaN	0.06511	1	21284	9.5785	0	1	127900			19322	1158	16301	16773	19322	19322		
TPIAAGHPSMNLLLR	15	Unmodified	_TPIAAGHPSMNLLLR_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.942867	1589.87118	2.1383	0.001702	-0.58019	-0.0004618	1.5582	0.0012402	795.942074783666	11.092	0.079816	11.092	11.057	11.137	0	276	22	1.13998907770044	0.0139823935652827	1.13998907770044	460.563066359427	0	5.64897873272713						148	10	3	NaN	NaN	NaN	0.00013866	1	21286	41.317	37.071	1	28788			19323	1158	16301	16773	19323	19323		
TPIGSFLGSLSLLPATK	17	Unmodified	_TPIGSFLGSLSLLPATK_			0	0	0	P24752	P24752	P24752	ACAT1	Acetyl-CoA acetyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.492913	1700.97127	2.0368	0.0017343	-0.63838	-0.00054358	1.3984	0.0011907	851.492337753692	19.827	0.20393	19.827	19.729	19.933	0	261	64	1.14997238118939	0.0419298952729088	1.14997238118939	464.334236688365	0	16.9303943594128						843	24	5	NaN	NaN	NaN	4.0342E-26	1	24538	181.08	157.14	1	551830			19324	832	16302	16774	19324	19324		
TPISEHAVFNVDLMSK	16	Unmodified	_TPISEHAVFNVDLMSK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.638067	1786.89237	-1.5821	-0.00094397	0.4853	0.00028955	-1.0968	-0.00065442	596.638261138116	12.564	0.11528	12.564	12.52	12.635	0	741	25	0.827064408645228	0.016324979319214	0.827064408645228	500.729465789263	0	9.88362948288494						208	14	4	NaN	NaN	NaN	9.4865E-05	1	26894	81.48	77.975	1	49082			19325	3161	16303	16775	19325	19325		
TPLENLVLQAK	11	Unmodified	_TPLENLVLQAK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.36117	1224.70779	1.002	0.00061456	-1.3961	-0.00085629	-0.3941	-0.00024173	613.360476480284	12.697	0.22171	12.697	12.573	12.795	0	549	34	0.957085760909907	0.0222499784868294	0.957085760909907	387.662893598093	0	9.0122446649915						415	26	3	NaN	NaN	NaN	0.00085901	1	10146	87.895	84.55	1	120480			19326	2114	16304	16776	19326	19326		
TPLEQEIFNLLHK	13	Unmodified	_TPLEQEIFNLLHK_			0	0	0	Q9BVJ6	Q9BVJ6	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.959357	1580.85624	-2.4303	-0.0012831	2.1842	0.0011532	-0.24603	-0.00012989	527.960581516398	18.036	0.1862	18.036	17.912	18.098	0	771	25	0.806643990516186	0.0163477001153799	0.806643990516186	488.855553565047	0	9.90729997790646						359	22	4	NaN	NaN	NaN	1.978E-05	1	21008	108.2	105.72	1	86267			19327	2765	16305	16777	19327	19327		
TPLFDQIIDMLR	12	Unmodified	_TPLFDQIIDMLR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.392144	1460.76974	0.72561	0.0005307	-0.7069	-0.00051702	0.018707	1.3682E-05	731.892910373143	20.137	0.053194	20.137	20.111	20.164	0	408	34	1.0518390438467	0.0221089774592802	1.0518390438467	425.274043520881	0	8.93898576709466						112	7	4	NaN	NaN	NaN	0.0078027	1	17303	48.701	45.822	1	49687			19328	1259	16306	16778	19328	19328		
TPLHCVMEVDTER	13	Unmodified	_TPLHCVMEVDTER_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.581564	1585.72286	-0.6675	-0.00035349	0.40542	0.0002147	-0.26208	-0.00013879	529.582222087021	7.394	0.24827	7.394	7.3053	7.5536	0	774	55	0.804600385996946	0.0367772198461339	0.804600385996946	487.604083049874	0	22.2877379532674						831	29	5	NaN	NaN	NaN	0.0060826	1	21116	72.922	59.747	1	315790			19329	3202	16307	16779	19329	19329		
TPLHCVMEVDTER	13	Unmodified	_TPLHCVMEVDTER_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.868708	1585.72286	2.5355	0.0020128	0.61161	0.00048554	3.1471	0.0024984	793.869645171105	7.4028	0.266	7.4028	7.2698	7.5358	0	393	49	1.0618830335572	0.0321252637556668	1.0618830335572	429.017399414321	0	12.9791103882562						744	31	4	NaN	NaN	NaN	0.0061234	1	21118	40.861	38.559	1	293130			19330	3202	16307	16779	19330	19330		
TPLHEIALSIK	11	Unmodified	_TPLHEIALSIK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	407.911568	1220.71287	-1.2169	-0.00049637	-0.28148	-0.00011482	-1.4983	-0.00061119	407.911332061866	9.7622	0.22169	9.7622	9.6913	9.913	0	774	52	0.804600385996946	0.034746123152013	0.804600385996946	488.862477142291	0	21.111195235306						670	26	4	NaN	NaN	NaN	0.037451	1	10048	37.749	30.103	1	276030			19331	1575	16308	16780	19331	19331		
TPLHEIALSIK	11	Unmodified	_TPLHEIALSIK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.363713	1220.71287	1.9037	0.0011639	0.033007	2.0179E-05	1.9367	0.001184	611.363649596949	9.7622	0.23053	9.7622	9.6824	9.913	0	516	52	0.979317271586824	0.0343435388719882	0.979317271586824	396.682118698455	0	13.9111891096013						732	27	4	NaN	NaN	NaN	1.6957E-11	1	10049	147.78	122.52	1	309540			19332	1575	16308	16780	19332	19332		
TPLIDLCDGQADQAAK	16	Unmodified	_TPLIDLCDGQADQAAK_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.417076	1714.8196	2.8954	0.0024855	1.9244	0.0016519	4.8198	0.0041374	858.420171140878	10.605	0.21281	10.605	10.489	10.702	0	345	169	1.09397730668811	0.11195963926362	1.09397730668811	441.695782935235	0	45.2039546152941						753	25	5	NaN	NaN	NaN	1.9025E-06	1	24900	106.97	88.873	1	150500			19333	3129	16309	16781	19333	19333		
TPLLDDPVFIHPSSVLFK	18	Unmodified	_TPLLDDPVFIHPSSVLFK_			0	0	0	Q8IY37	Q8IY37	Q8IY37	DHX37	Probable ATP-dependent RNA helicase DHX37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.706698	2024.09826	-0.031668	-2.1398E-05	-1.2099	-0.00081752	-1.2415	-0.00083892	676.039585379632	17.406	0.097536	17.406	17.362	17.459	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	580.148966451652	0	9.78607668330972						168	12	3	NaN	NaN	NaN	0.0021596	1	32051	36.059	33.344	1	45709			19334	2218	16310	16782	19334	19334		
TPLLDEEEEENPDK	14	Unmodified	_TPLLDEEEEENPDK_			0	0	0	P23634	P23634	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.375597	1656.73664	3.189	0.0026449	-0.27735	-0.00023003	2.9116	0.0024148	829.375623694928	7.66	0.1508	7.66	7.5801	7.7309	0	390	40	1.06389100039157	0.0261071745349262	1.06389100039157	429.669102047563	0	10.5437927713385						353	18	3	NaN	NaN	NaN	0.00025648	1	23233	61.194	58.316	1	84578			19335	825	16311	16783	19335	19335		
TPLLLMLGQEDR	12	Unmodified	_TPLLLMLGQEDR_			0	0	0	P13798	P13798	P13798	APEH	Acylamino-acid-releasing enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.376494	1384.73844	0.79511	0.00055131	0.73473	0.00050945	1.5298	0.0010608	693.376865040708	15.881	0.18622	15.881	15.81	15.996	0	429	55	1.03776581230406	0.0362108052293146	1.03776581230406	419.800104025103	0	14.6481023192978						776	22	5	NaN	NaN	NaN	0.00066453	1	14983	70.389	64.126	1	211060			19336	684	16312	16784	19336	19336		
TPLSEAEFEEIMNR	14	Unmodified	_TPLSEAEFEEIMNR_			0	0	0	Q16630	Q16630	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.931139	1664.77159	-1.3772	-0.00076561	-0.29407	-0.00016349	-1.6712	-0.00092909	555.93105014347	14.684	0.070936	14.684	14.657	14.728	0	729	31	0.835224628594324	0.0203892128493071	0.835224628594324	505.955110620041	0	12.351200011892						178	9	4	NaN	NaN	NaN	3.0791E-06	1	23471	144.47	136.47	1	38983			19337	1895	16313	16785	19337	19337		
TPLVSVLLEGPPHSGK	16	Unmodified	_TPLVSVLLEGPPHSGK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.96178	1629.90901	1.8113	0.0014779	0.99474	0.00081167	2.806	0.0022896	816.464065929788	13.46	0.24834	13.46	13.309	13.558	0	243	31	1.16194328902838	0.0199460300258694	1.16194328902838	469.333110380464	0	8.05661722063172						490	29	3	NaN	NaN	NaN	1.9544E-18	1	22492	165.72	156.46	1	114440			19338	1082	16314	16786	19338	19338		
TPLYDLR	7	Unmodified	_TPLYDLR_			0	0	0	Q9Y316	Q9Y316	Q9Y316	MEMO1	Protein MEMO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.242535	876.470518	-1.2611	-0.00055394	1.211	0.00053193	-0.050091	-2.2002E-05	439.242917733951	7.9083	0.15077	7.9083	7.864	8.0148	8.8818E-16	711	28	0.847456455381371	0.018341368585978	0.847456455381371	344.773679237174	0	7.46188325013929						243	18	3	NaN	NaN	NaN	0.027508	1	1962	40.203	32.852	1	67644			19339	3365	16315	16787	19339	19339		
TPMENIGLQDSLLSR	15	Unmodified	_TPMENIGLQDSLLSR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.429987	1672.84542	2.9064	0.0024339	-0.055325	-4.6331E-05	2.8511	0.0023876	837.430121404017	13.815	0.17732	13.815	13.762	13.939	0	345	52	1.09397730668811	0.0340696336086099	1.09397730668811	441.784640817914	0	13.7584580178763						575	21	4	NaN	NaN	NaN	1.2607E-11	1	23704	165.02	157.06	1	285830			19340	835	16316	16788	19340	19340		
TPMGIVLDALEQQEEGINR	19	Unmodified	_TPMGIVLDALEQQEEGINR_			0	0	0	O75915	O75915	O75915	ARL6IP5	PRA1 family protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.024649	2112.05212	-0.47398	-0.00033417	0.38445	0.00027105	-0.089527	-6.3119E-05	705.359373241428	19.206	0.10638	19.206	19.135	19.242	0	585	34	0.932794566565362	0.0222931596374992	0.932794566565362	564.072332154561	0	13.4809474653357						219	13	3	NaN	NaN	NaN	3.4471E-07	1	33485	102.03	92.008	1	42025			19341	368	16317	16789	19341	19341		
TPMGIVLDALEQQEEGINR	19	Unmodified	_TPMGIVLDALEQQEEGINR_			0	0	0	O75915	O75915	O75915	ARL6IP5	PRA1 family protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.03334	2112.05212	0.60595	0.00064051	0.76113	0.00080453	1.3671	0.001445	1057.53424277132	19.215	0.13298	19.215	19.135	19.268	0	132	61	1.23554629282893	0.0397117350614558	1.23554629282893	498.101563081513	0	16.009499135399						380	16	2	NaN	NaN	NaN	0.0021833	1	33486	34.338	29.74	1	105300			19342	368	16317	16789	19342	19342		
TPMIAGGLFVMDK	13	Unmodified	_TPMIAGGLFVMDK_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.356716	1378.69888	1.4505	0.0010013	-0.86097	-0.00059438	0.58951	0.00040697	690.357066878725	15.553	0.21281	15.553	15.5	15.712	0	474	55	1.00756305028564	0.0362808886855345	1.00756305028564	407.600050182336	0	14.6770884905825						690	25	4	NaN	NaN	NaN	0.00046322	1	14774	68.548	63.72	1	229880			19343	1586	16318	16790	19343	19343		
TPMYGSQTPLQDGSR	15	Unmodified	_TPMYGSQTPLQDGSR_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.383036	1636.75152	2.1046	0.0017244	-1.1833	-0.0009696	0.92123	0.00075484	819.382244795746	6.9417	0.10635	6.9417	6.8974	7.0037	0	414	40	1.04781950764076	0.0261323987291064	1.04781950764076	423.221232486054	0	10.5550487629795						289	13	3	NaN	NaN	NaN	4.7744E-08	1	22682	102.57	97.179	1	62680			19344	69	16319	16791	19344	19344		
TPPGLQHEYAAPADYFR	17	Unmodified	_TPPGLQHEYAAPADYFR_			0	0	0	Q9BVL2	Q9BVL2	Q9BVL2	NUPL1	Nucleoporin p58/p45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.97948	1931.91661	0.99126	0.00063935	-0.18504	-0.00011935	0.80623	0.00052	645.313591095984	10.436	0.10643	10.436	10.401	10.507	0	606	52	0.918606045818476	0.0344912931175532	0.918606045818476	555.830250586664	0	20.8699955588754						311	13	3	NaN	NaN	NaN	0.053253	1	30356	9.9112	9.1724	1	51007			19345	2767	16320	16792	19345	19345		
TPPSEEDSAEAER	13	Unmodified	_TPPSEEDSAEAER_			0	0	0	O43765	O43765	O43765	SGTA	Small glutamine-rich tetratricopeptide repeat-containing protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.307517	1416.60048	2.6996	0.0019149	0.027691	1.9642E-05	2.7273	0.0019345	709.809068161878	2.7474	0.25716	2.7474	2.6143	2.8715	0	552	34	0.955063035883597	0.0222530586923161	0.955063035883597	386.259016437443	0	8.99987146426037						310	30	2	NaN	NaN	NaN	0.033928	1	15982	28.328	24.592	1	56925			19346	227	16321	16793	19346	19346		
TPQGPPEIYSDTQFPSLQSTAK	22	Unmodified	_TPQGPPEIYSDTQFPSLQSTAK_			0	0	0	Q9UKY7	Q9UKY7	Q9UKY7	CDV3	Protein CDV3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1196.58699	2391.15942	0.88701	0.0010614	-0.18879	-0.0002259	0.69822	0.00083549	1197.08867776868	13.327	0.079813	13.327	13.274	13.354	0	69	61	1.27715511956461	0.0395921875066181	1.27715511956461	514.483069754698	0	15.9491277564252						385	10	4	NaN	NaN	NaN	0.025074	1	36305	24.172	23.867	1	69970			19347	3271	16322	16794	19347	19347		
TPQPGSPSPNTPCLPEAAVSQPGSAVASDWR	31	Unmodified	_TPQPGSPSPNTPCLPEAAVSQPGSAVASDWR_			0	0	0	Q9Y4R8	Q9Y4R8	Q9Y4R8	TELO2	Telomere length regulation protein TEL2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	791.12937	3160.48838	1.852	0.0014652	-0.29433	-0.00023285	1.5577	0.0012323	791.380317953744	14.418	0.34579	14.418	14.32	14.666	0	510	130	0.983355730988811	0.0869172018348763	0.983355730988811	791.142704188647	0	69.9278073368313						3465	40	9	NaN	NaN	NaN	0.05996	1	38420	8.6942	0	1	5376400			19348	3414	16323	16795	19348	19348		
TPQQLWYTHEK	11	Unmodified	_TPQQLWYTHEK_			0	0	0	P17480	P17480	P17480	UBTF	Nucleolar transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.573614	1429.69901	-0.6462	-0.00030861	-0.55077	-0.00026304	-1.197	-0.00057164	477.573459278781	6.1347	0.088655	6.1347	6.0993	6.1879	0	816	25	0.775960037304758	0.0163841521747742	0.775960037304758	470.69090468331	0	9.93849043618286						169	11	3	NaN	NaN	NaN	0.014471	1	16377	49.16	45.815	1	44949			19349	737	16324	16796	19349	19349		
TPSALAILENANVLAR	16	Unmodified	_TPSALAILENANVLAR_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.970136	1651.92572	1.1765	0.0009729	0.067996	5.6231E-05	1.2445	0.0010291	827.472142489202	18.133	0.062067	18.133	18.107	18.169	0	318	34	1.11199926528787	0.02201470966097	1.11199926528787	449.109227080863	0	8.89120123446151						140	8	3	NaN	NaN	NaN	2.0306E-08	1	23120	101.64	90.161	1	29240			19350	615	16325	16797	19350	19350		
TPSALAILENANVLAR	16	Unmodified	_TPSALAILENANVLAR_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.970136	1651.92572	1.1365	0.00093983	1.6937	0.0014006	2.8302	0.0023405	826.97163328803	18.115	0.088658	18.115	18.08	18.169	0	249	34	1.15795408347545	0.0219421415899306	1.15795408347545	467.669244592259	0	8.86189265061375						189	11	3	NaN	NaN	NaN	1.0652E-17	1	23122	169.57	138.65	1	48519			19351	615	16325	16797	19351	19351		
TPSFGISAPQVSIPDVNVNLK	21	Unmodified	_TPSFGISAPQVSIPDVNVNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.08897	2182.16338	-0.15246	-0.0001665	0.18053	0.00019716	0.028072	3.0658E-05	1092.59083858799	17.043	0.11526	17.043	16.989	17.105	0	105	67	1.25339330680955	0.0436230653615215	1.25339330680955	505.190389987513	0	17.582632109736						651	14	5	NaN	NaN	NaN	1.0301E-05	1	34484	59.77	58.755	1	179960			19352	1584	16326	16798	19352	19352		
TPSIQPSLLPHAAPFAK	17	Unmodified	_TPSIQPSLLPHAAPFAK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	592.333195	1773.97776	0.87839	0.0005203	1.1201	0.00066344	1.9984	0.0011837	592.334119056397	12.29	0.13303	12.29	12.21	12.343	0	531	28	0.969216233931596	0.0181894169559895	0.969216233931596	586.825275387445	0	11.0130322219603						269	16	3	NaN	NaN	NaN	0.0013767	1	26523	54.309	43.824	1	61989			19353	978	16327	16799	19353	19353		
TPSNELYK	8	Unmodified	_TPSNELYK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.242732	950.470912	0.5545	0.00026408	0.76361	0.00036366	1.3181	0.00062774	476.243180662384	3.4834	0.31932	3.4834	3.4301	3.7494	0	723	46	0.839303037468863	0.0305987056772422	0.839303037468863	341.04645008952	0	12.433625857031						463	37	3	NaN	NaN	NaN	0.017897	1	3252	65.156	46.753	1	108470			19354	2370	16328	16800	19354	19354		
TPSSDVLVFDYTK	13	Unmodified	_TPSSDVLVFDYTK_			0	0	0	Q09028;Q16576	Q09028;Q16576	Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.369389	1470.72423	1.9991	0.0014721	0.99326	0.00073141	2.9924	0.0022035	736.370301536477	12.733	0.36358	12.733	12.635	12.999	0	450	79	1.02367897599655	0.0523189620804962	1.02367897599655	413.86222107575	0	21.1519845173465						1405	42	4	NaN	NaN	NaN	5.6352E-06	1	17608	122.51	101.36	1	1032700			19355	1582;1890	16329	16801	19355	19355		
TPTEAPADCR	10	Unmodified	_TPTEAPADCR_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.250763	1116.48697	1.6005	0.00089508	0.95301	0.00053297	2.5535	0.0014281	559.25180615486	2.3395	0.13298	2.3395	2.3217	2.4547	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	346.932849547825	0	6.60662487680162						186	16	3	NaN	NaN	NaN	0.017881	1	7165	49.16	43.851	1	32552			19356	2149	16330	16802	19356	19356		
TPTLYLDFK	9	Unmodified	_TPTLYLDFK_			0	0	0	O00625	O00625	O00625	PIR	Pirin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.297507	1096.58046	-0.18872	-0.00010366	-1.2232	-0.0006719	-1.4119	-0.00077556	549.296820430155	13.114	0.26604	13.114	13.017	13.283	0	660	49	0.882057989648486	0.0325322604149904	0.882057989648486	357.738105119655	0	13.1941769506059						405	31	2	NaN	NaN	NaN	5.7407E-05	1	6624	122.44	98.86	1	287550			19357	95	16331	16803	19357	19357		
TPTMGWLHWER	11	Unmodified	_TPTMGWLHWER_			0	0	0	P06280	P06280	P06280	GLA	Alpha-galactosidase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.895923	1412.66594	-2.4843	-0.0011723	1.4064	0.00066367	-1.0779	-0.00050866	471.897058156879	12.52	0.079813	12.52	12.485	12.564	0	792	34	0.792332785124922	0.0224952996214562	0.792332785124922	480.677914105826	0	13.6470355666558						162	10	3	NaN	NaN	NaN	0.008644	1	15842	43.168	38.641	1	29828			19358	538	16332	16804	19358	19358		
TPTSSPASSPLVAK	14	Unmodified	_TPTSSPASSPLVAK_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.864274	1341.714	1.5031	0.0010099	-0.69126	-0.00046444	0.81184	0.00054545	671.863716655182	5.381	0.15958	5.381	5.3189	5.4785	0	501	46	0.98941132619024	0.0302654273538991	0.98941132619024	400.366464181425	0	12.2469410000371						397	19	3	NaN	NaN	NaN	0.03683	1	13671	55.578	39.291	1	106820			19359	1765	16333	16805	19359	19359		
TPVEPEVAIHR	11	Unmodified	_TPVEPEVAIHR_			0	0	0	P60866	P60866	P60866	RPS20	40S ribosomal protein S20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.562938	1246.66699	-0.24169	-0.00010068	-1.17	-0.00048738	-1.4117	-0.00058806	416.562612425646	5.6825	0.41685	5.6825	5.6115	6.0283	0	852	79	0.751366682244005	0.0533376463368963	0.751366682244005	456.412420488673	0	32.3995791177309						1250	48	5	NaN	NaN	NaN	1.679E-08	1	10834	166.61	131.68	1	920090			19360	1312	16334	16806	19360	19360		
TPVEPEVAIHR	11	Unmodified	_TPVEPEVAIHR_			0	0	0	P60866	P60866	P60866	RPS20	40S ribosomal protein S20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.340769	1246.66699	2.6805	0.0016735	1.4	0.0008741	4.0805	0.0025476	624.341715322697	5.6825	0.23946	5.6825	5.6115	5.8509	0	549	58	0.957085760909907	0.0384264728149466	0.957085760909907	387.586770993864	0	15.5613980766669						580	28	5	NaN	NaN	NaN	0.0008264	1	10835	90.263	61.161	1	1165900			19361	1312	16334	16806	19361	19361		
TPVEVPVGGFK	11	Unmodified	_TPVEVPVGGFK_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.316232	1128.61791	1.3875	0.00078439	-4.1465	-0.0023441	-2.759	-0.0015597	565.313967559251	9.7002	0.38128	9.7002	9.5494	9.9307	0	633	88	0.900343422309015	0.0589034369218339	0.900343422309015	365.025516535777	0	23.8811735115286						714	44	4	NaN	NaN	NaN	0.00084526	1	7497	81.163	49.211	1	785110			19362	1816	16335	16807	19362	19362		
TPVIVTLK	8	Unmodified	_TPVIVTLK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	435.786579	869.558604	-1.51	-0.00065805	0.4958	0.00021606	-1.0142	-0.00044199	435.786759331178	8.485	0.16847	8.485	8.4229	8.5914	0	747	43	0.822982596624503	0.0285806380781382	0.822982596624503	334.857921764374	0	11.6289859698111						430	20	4	NaN	NaN	NaN	0.001596	1	1862	113.7	28.999	1	263450			19363	3410	16336	16808	19363	19363		
TPVLFDIYEIK	11	Unmodified	_TPVLFDIYEIK_			0	0	0	P50995	P50995	P50995	ANXA11	Annexin A11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.371204	1336.72785	0.10081	6.7482E-05	-0.023899	-1.5997E-05	0.076915	5.1485E-05	669.37121334695	16.901	0.27493	16.901	16.839	17.114	0	501	58	0.98941132619024	0.0383468163540439	0.98941132619024	400.381687261935	0	15.5176746278763						944	32	5	NaN	NaN	NaN	2.6723E-11	1	13507	163.43	125.7	1	592970			19364	1176	16337	16809	19364	19364		
TPVPSDIDISR	11	Unmodified	_TPVPSDIDISR_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.31696	1198.61937	0.87505	0.00052531	-0.31251	-0.00018761	0.56254	0.0003377	600.316905697185	8.3608	0.2129	8.3608	8.3076	8.5205	0	618	43	0.910492137470517	0.0284065601691176	0.910492137470517	368.879813768076	0	11.508728295103						574	25	4	NaN	NaN	NaN	1.0902E-05	1	9424	99.34	78.252	1	349870			19365	656	16338	16810	19365	19365		
TPVSITEHPK	10	Unmodified	_TPVSITEHPK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.803488	1107.59242	1.478	0.00081999	0.013715	7.6091E-06	1.4917	0.0008276	554.803745657609	3.3592	0.13299	3.3592	3.3237	3.4567	0	645	34	0.892219381832517	0.0223457630982734	0.892219381832517	361.814626304096	0	9.06169949847526						233	16	3	NaN	NaN	NaN	0.00092634	1	6931	85.716	65.482	1	68894			19366	1737	16339	16811	19366	19366		
TPVTDPATGAVK	12	Unmodified	_TPVTDPATGAVK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.814053	1155.61355	1.5917	0.00092128	0.14249	8.2473E-05	1.7342	0.0010038	578.813973130309	4.6273	0.12413	4.6273	4.5652	4.6893	0	555	46	0.953040030838688	0.0303576898931419	0.953040030838688	386.281298096757	0	12.3044231928244						321	15	2	NaN	NaN	NaN	3.8637E-05	1	8222	121.8	95.34	1	132600			19367	1145	16340	16812	19367	19367		
TPVTQVNEVTGTLR	14	Unmodified	_TPVTQVNEVTGTLR_			0	0	0	Q13405	Q13405	Q13405	MRPL49	39S ribosomal protein L49, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.912287	1513.81002	1.661	0.0012589	0.097399	7.382E-05	1.7584	0.0013327	757.912514533016	9.5583	0.15067	9.5583	9.4874	9.6381	0	429	43	1.03776581230406	0.0281678436132822	1.03776581230406	419.446061670588	0	11.3849299420576						505	18	4	NaN	NaN	NaN	5.82E-05	1	18938	117.21	97.954	1	143810			19368	1660	16341	16813	19368	19368		
TPWLYEQEGEVEK	13	Unmodified	_TPWLYEQEGEVEK_			0	0	0	Q15154	Q15154	Q15154	PCM1	Pericentriolar material 1 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.383028	1606.7515	1.9513	0.0015696	1.2669	0.0010191	3.2182	0.0025886	804.384199928308	10.25	0.097538	10.25	10.206	10.303	0	357	40	1.08596037261705	0.0260640179471912	1.08596037261705	438.695301243836	0	10.5290786784537						246	12	3	NaN	NaN	NaN	1.7687E-08	1	21805	126.48	107.16	1	56890			19369	1817	16342	16814	19369	19369		
TPYTDVNIVTIR	12	Unmodified	_TPYTDVNIVTIR_			0	0	0	P50213	P50213	P50213	IDH3A	Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.380091	1390.74563	1.0769	0.00074992	0.42293	0.00029452	1.4998	0.0010444	696.380603592981	11.678	0.16845	11.678	11.624	11.793	0	468	55	1.01159370163332	0.0362758759796945	1.01159370163332	409.195410961546	0	14.6737983397229						598	20	5	NaN	NaN	NaN	2.3711E-11	1	15178	154.66	135.41	1	391760			19370	1158	16343	16815	19370	19370		
TPYTIMFGPDK	11	Unmodified	_TPYTIMFGPDK_			0	0	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.312832	1268.61111	1.1748	0.00074637	0.91402	0.00058069	2.0888	0.0013271	635.313868176668	12.112	0.35473	12.112	11.97	12.325	0	549	67	0.957085760909907	0.0444907380915777	0.957085760909907	387.513328601304	0	18.0138026433548						1599	41	7	NaN	NaN	NaN	1.3366E-07	1	11464	159.11	115.38	1	1728100			19371	870	16344	16816	19371	19371		
TPYTIMFGPDK	11	Oxidation (M)	_TPYTIM(Oxidation (M))FGPDK_	TPYTIM(1)FGPDK	TPYTIM(86)FGPDK	0	1	0	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.310289	1284.60602	1.8566	0.0011943	-0.33186	-0.00021349	1.5247	0.00098085	643.310178978139	10.126	0.30148	10.126	10.01	10.312	0	534	49	0.967195187796614	0.0323434604594182	0.967195187796614	391.554015901289	0	13.0937498354187						642	35	3	NaN	NaN	NaN	2.7971E-06	1	11892	85.622	69.165	1	335210			19372	870	16344	16817	19372	19372	296	
TQADLDSLVR	10	Unmodified	_TQADLDSLVR_			0	0	0	Q7Z4W1	Q7Z4W1	Q7Z4W1	DCXR	L-xylulose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.296027	1116.5775	0.46406	0.00025955	-3.466	-0.0019385	-3.0019	-0.0016789	559.295094841597	8.9198	0.17752	8.9198	8.8753	9.0528	0	654	40	0.886123392477847	0.0264122944165538	0.886123392477847	359.307043414135	0	10.7097087123031						350	21	3	NaN	NaN	NaN	0.00072527	1	7181	51.872	30.598	1	95380			19373	2142	16345	16818	19373	19373		
TQAIVCQQLDLTHLK	15	Unmodified	_TQAIVCQQLDLTHLK_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.985578	1766.9349	0.45089	0.00026602	-0.98564	-0.00058152	-0.53476	-0.0003155	590.319242290035	11.146	0.15962	11.146	11.101	11.261	-1.7764E-15	666	55	0.877991458330206	0.0365937172301484	0.877991458330206	531.60840520835	0	22.1568529770915						568	19	5	NaN	NaN	NaN	1.6726E-06	1	26323	126.17	109.89	1	207710			19374	1335	16346	16819	19374	19374		
TQAIVCQQLDLTHLK	15	Unmodified	_TQAIVCQQLDLTHLK_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.474728	1766.9349	1.9845	0.0017553	-0.22805	-0.00020171	1.7565	0.0015536	884.975657418786	11.146	0.062086	11.146	11.11	11.172	0	228	22	1.17191150690002	0.013951670583596	1.17191150690002	473.049983362979	0	5.63168592389195						107	8	3	NaN	NaN	NaN	4.9225E-06	1	26325	85.813	72.639	1	17756			19375	1335	16346	16819	19375	19375		
TQASSSFQDSSQPAGK	16	Unmodified	_TQASSSFQDSSQPAGK_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.373723	1624.73289	3.194	0.0025979	-1.6826	-0.0013685	1.5114	0.0012293	813.371871500099	3.2351	0.12415	3.2351	3.1996	3.3237	0	435	28	1.03374239103424	0.0181091469845289	1.03374239103424	417.561315957553	0	7.31485843215091						220	15	3	NaN	NaN	NaN	7.8302E-05	1	22318	104	99.753	1	43212			19376	1077	16347	16820	19376	19376		
TQDECILHFLR	11	Unmodified	_TQDECILHFLR_			0	0	0	Q92922;Q8TAQ2	Q92922;Q8TAQ2	Q8TAQ2	SMARCC1;SMARCC2	SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	477.906488	1430.69763	-1.9922	-0.00095207	-0.16947	-8.0991E-05	-2.1616	-0.0010331	477.906472880222	12.547	0.21281	12.547	12.467	12.68	0	786	31	0.796423123669906	0.0204488487727063	0.796423123669906	483.100414327019	0	12.4040186943386						455	25	4	NaN	NaN	NaN	0.001482	1	16410	53.517	46.377	1	237610			19377	2333;2445	16348	16821	19377	19377		
TQDECILHFLR	11	Unmodified	_TQDECILHFLR_			0	0	0	Q92922;Q8TAQ2	Q92922;Q8TAQ2	Q8TAQ2	SMARCC1;SMARCC2	SWI/SNF complex subunit SMARCC1;SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.356093	1430.69763	1.5465	0.0011078	-1.3361	-0.00095713	0.21037	0.0001507	716.356798760414	12.547	0.16845	12.547	12.449	12.618	0	426	61	1.03977710643793	0.0402453422133766	1.03977710643793	420.480123898257	0	16.2749942996736						573	20	5	NaN	NaN	NaN	0.054848	1	16411	46.068	24.065	1	169480			19378	2333;2445	16348	16821	19378	19378		
TQDQISNIK	9	Unmodified	_TQDQISNIK_			0	0	0	Q14847	Q14847	Q14847	LASP1	LIM and SH3 domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.77747	1045.54039	1.4534	0.00076124	0.039347	2.0609E-05	1.4927	0.00078185	523.777817127007	3.6253	0.15956	3.6253	3.581	3.7406	0	666	40	0.877991458330206	0.0264379622091019	0.877991458330206	356.304465355096	0	10.7289927488674						348	19	3	NaN	NaN	NaN	0.00029044	1	5369	88.181	76.114	1	157570			19379	1777	16349	16822	19379	19379		
TQEELTPFFK	10	Unmodified	_TQEELTPFFK_			0	0	0	CON__P81644	CON__P81644	CON__P81644			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.316428	1238.6183	0.88105	0.00054653	0.79247	0.00049158	1.6735	0.0010381	620.316592569886	12.387	0.17732	12.387	12.307	12.485	0	579	40	0.936845902828289	0.0263282200540531	0.936845902828289	379.417330354719	0	10.6627812917183						307	21	4	NaN	NaN	NaN	0.0010121	1	10576	72.365	51.277	1	128060		+	19380	34	16350	16823	19380	19380		
TQEIQENLLSLEETMK	16	Unmodified	_TQEIQENLLSLEETMK_			0	0	0	Q92888	Q92888	Q92888	ARHGEF1	Rho guanine nucleotide exchange factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.477331	1904.94011	1.4336	0.0013669	-0.14478	-0.00013805	1.2888	0.0012289	953.47619275662	15.633	0.16845	15.633	15.588	15.757	0	210	52	1.18386433251387	0.0338686755985531	1.18386433251387	477.605179079228	0	13.6636052207729						451	20	4	NaN	NaN	NaN	2.3355E-06	1	29703	115.79	105.77	1	105830			19381	2439	16351	16824	19381	19381		
TQEPFSVR	8	Unmodified	_TQEPFSVR_			0	0	0	O60942	O60942	O60942	RNGTT	mRNA-capping enzyme;Polynucleotide 5-triphosphatase;mRNA guanylyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.248349	962.482145	-0.5327	-0.00025689	-0.49173	-0.00023714	-1.0244	-0.00049403	482.248228888946	5.8775	0.133	5.8775	5.8066	5.9396	0	729	31	0.835224628594324	0.0203948812138425	0.835224628594324	339.328833122476	0	8.28588023752593						151	16	2	NaN	NaN	NaN	0.051642	1	3490	51.864	39.797	1	29760			19382	297	16352	16825	19382	19382		
TQEQLALEMAELTAR	15	Unmodified	_TQEQLALEMAELTAR_			0	0	0	P26038	P26038	P26038	MSN	Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.435269	1702.85598	2.1493	0.0018321	-0.28606	-0.00024385	1.8632	0.0015883	852.435038193714	15.109	0.23057	15.109	14.976	15.207	0	348	76	1.09197348738011	0.0500955197846764	1.09197348738011	440.911579240077	0	20.2273177841592						917	27	5	NaN	NaN	NaN	2.0382E-34	1	24584	289.44	254.66	1	364570			19383	846	16353	16826	19383	19383		
TQETLSQAGQK	11	Unmodified	_TQETLSQAGQK_			0	0	0	O43399	O43399	O43399	TPD52L2	Tumor protein D54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.804217	1189.59388	2.1485	0.0012801	-2.321	-0.0013828	-0.17247	-0.00010276	595.803179350648	2.4015	0.2483	2.4015	2.3749	2.6232	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	369.733738299359	0	7.39859327256983						307	29	3	NaN	NaN	NaN	6.043E-08	1	9146	107.08	88.742	1	50886			19384	199	16354	16827	19384	19384		
TQFLPPNLLALFAPR	15	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TQFLPPNLLALFAPR_			1	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.49579	1738.97703	0.74682	0.0006501	0.2427	0.00021127	0.98953	0.00086138	870.495713385756	20.35	0.044336	20.35	20.341	20.385	0	165	82	1.21370334790578	0.0537250085035048	1.21370334790578	489.980859980672	0	21.6891762838407						169	6	3	NaN	NaN	NaN	0.00011528	1	25579	69.276	65.029	1	40565			19385	586	16355	16828	19385	19385		
TQGLVPEHVETR	12	Unmodified	_TQGLVPEHVETR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.35969	1364.70483	2.4296	0.0016603	-0.90287	-0.00061698	1.5268	0.0010433	683.359541802645	4.9553	0.15071	4.9553	4.8844	5.0351	0	474	28	1.00756305028564	0.0181391858417761	1.00756305028564	407.641544387128	0	7.33878215201571						236	18	3	NaN	NaN	NaN	0.00027057	1	14345	84.309	68.022	1	65024			19386	3136	16356	16829	19386	19386		
TQHGVLSQQFVELINK	16	Unmodified	_TQHGVLSQQFVELINK_			0	0	0	Q12846	Q12846	Q12846	STX4	Syntaxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.335375	1839.9843	-1.1697	-0.0007186	-0.42042	-0.00025828	-1.5901	-0.00097688	614.335285195756	13.043	0.097523	13.043	13.008	13.105	0	729	25	0.835224628594324	0.0163159042618426	0.835224628594324	505.557662468827	0	9.87594251568561						232	12	4	NaN	NaN	NaN	1.5408E-06	1	28238	85.813	70.197	1	56919			19387	1599	16357	16830	19387	19387		
TQHLQELFSR	10	Unmodified	_TQHLQELFSR_			0	0	0	Q9UHI6	Q9UHI6	Q9UHI6	DDX20	Probable ATP-dependent RNA helicase DDX20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	420.222805	1257.64658	-1.9825	-0.0008331	-1.3759	-0.0005782	-3.3584	-0.0014113	420.221910483495	7.5358	0.11526	7.5358	7.4649	7.5801	0	807	19	0.782101955086014	0.0122812703870125	0.782101955086014	475.036986514462	0	7.45945926522353						79	14	2	NaN	NaN	NaN	0.011067	1	11142	34.953	28.689	1	20315			19388	3218	16358	16831	19388	19388		
TQIAPGSQTVLGIGPGPADLIDK	23	Unmodified	_TQIAPGSQTVLGIGPGPADLIDK_			0	0	0	Q9Y3E5	Q9Y3E5	Q9Y3E5	PTRH2	Peptidyl-tRNA hydrolase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1124.61281	2247.21106	0.72213	0.00081211	-0.34917	-0.00039268	0.37296	0.00041943	1125.11421466813	15.642	0.13298	15.642	15.571	15.704	-1.7764E-15	75	73	1.27319752866042	0.0475236495784026	1.27319752866042	513.078669120554	0	19.1512866845515						724	16	4	NaN	NaN	NaN	0.00065633	1	35164	37.061	35.438	1	156340			19389	3393	16359	16832	19389	19389		
TQIDHYVGIAR	11	Unmodified	_TQIDHYVGIAR_			0	0	0	O95197	O95197	O95197	RTN3	Reticulon-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	424.894688	1271.66223	-1.3781	-0.00058553	0.64433	0.00027377	-0.73372	-0.00031175	424.895033765918	6.6047	0.24826	6.6047	6.5072	6.7555	0	795	40	0.790287188799094	0.0265964598073064	0.790287188799094	479.95119529141	0	16.1523593649976						621	29	5	NaN	NaN	NaN	0.002955	1	11544	83.358	76.667	1	367250			19390	410	16360	16833	19390	19390		
TQIDHYVGIAR	11	Unmodified	_TQIDHYVGIAR_			0	0	0	O95197	O95197	O95197	RTN3	Reticulon-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.838394	1271.66223	1.9519	0.001243	0.13124	8.3576E-05	2.0831	0.0013266	636.838800395555	6.6047	0.28374	6.6047	6.5249	6.8087	0	522	64	0.975277694896658	0.0424361193214464	0.975277694896658	394.868839940746	0	17.1814666691646						674	33	4	NaN	NaN	NaN	2.1715E-07	1	11547	153.33	118.55	1	577230			19391	410	16360	16833	19391	19391		
TQIIQDFLR	9	Unmodified	_TQIIQDFLR_			0	0	0	P49916	P49916	P49916	LIG3	DNA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.319306	1132.62406	0.20689	0.00011737	-1.5588	-0.00088433	-1.3519	-0.00076696	567.318625219286	13.717	0.13301	13.717	13.673	13.806	0	621	37	0.908462957275599	0.0243518545960122	0.908462957275599	368.301680370857	0	9.87253128598093						231	16	3	NaN	NaN	NaN	0.01087	1	7613	48.157	30.762	1	73233			19392	1156	16361	16834	19392	19392		
TQILAASYELHK	12	Unmodified	_TQILAASYELHK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.585632	1372.73507	-1.4554	-0.00066743	-0.98911	-0.00045359	-2.4445	-0.001121	458.58547921498	7.8285	0.12415	7.8285	7.7842	7.9083	0	783	28	0.798467866007927	0.0184001219300317	0.798467866007927	484.536229377157	0	11.1657914859269						218	15	3	NaN	NaN	NaN	0.048359	1	14585	40.533	33.786	1	66184			19393	1511	16362	16835	19393	19393		
TQILAASYELHK	12	Unmodified	_TQILAASYELHK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.374809	1372.73507	2.0788	0.0014289	-0.72425	-0.00049783	1.3545	0.00093108	687.374150528365	7.8285	0.15077	7.8285	7.7753	7.9261	0	444	28	1.02770517576159	0.0181141482765854	1.02770517576159	415.766287023609	0	7.32822247973002						332	18	4	NaN	NaN	NaN	0.0048085	1	14588	55.754	40.172	1	108950			19394	1511	16362	16835	19394	19394		
TQILEWAAER	10	Unmodified	_TQILEWAAER_			0	0	0	P17813	P17813	P17813	ENG	Endoglin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.81967	1215.62479	-0.39338	-0.0002395	-0.64138	-0.00039049	-1.0348	-0.00062998	608.819205924861	11.642	0.11526	11.642	11.589	11.704	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	367.999102227661	0	6.57627970834727						202	14	3	NaN	NaN	NaN	5.5876E-05	1	9895	87.895	55.943	1	46291			19395	742	16363	16836	19395	19395		
TQIQSQESDLK	11	Unmodified	_TQIQSQESDLK_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.822606	1275.63066	2.8947	0.0018492	-2.8449	-0.0018174	0.049737	3.1773E-05	638.820696078669	3.7849	0.17741	3.7849	3.714	3.8914	0	567	28	0.944945209309785	0.0182171330553085	0.944945209309785	382.575097768616	0	7.37547679064818						221	21	4	NaN	NaN	NaN	0.00078532	1	11646	72.922	52.688	1	57358			19396	3170	16364	16837	19396	19396		
TQIVDCAAVANWIFSSELSR	20	Unmodified	_TQIVDCAAVANWIFSSELSR_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1134.05988	2266.10522	0.43142	0.00048926	-0.82492	-0.00093551	-0.3935	-0.00044625	1134.55971655211	19.419	0.044277	19.419	19.401	19.446	0	84	46	1.26725910986255	0.0297043028427506	1.26725910986255	510.65941382931	0	11.9697556402121						165	6	3	NaN	NaN	NaN	2.9076E-07	1	35334	77.347	73.906	1	29901			19397	1583	16365	16838	19397	19397		
TQIVTEIISEIR	12	Unmodified	_TQIVTEIISEIR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.401024	1400.78749	0.32282	0.00022643	0.4485	0.00031458	0.77132	0.00054101	701.401458991263	17.105	0.1596	17.105	17.06	17.22	0	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	409.166532345782	0	9.78183973181325						347	19	4	NaN	NaN	NaN	3.61E-05	1	15483	90.689	76.234	1	100120			19398	2687	16366	16839	19398	19398		
TQLEELEDELQATEDAK	17	Unmodified	_TQLEELEDELQATEDAK_			0	0	0	P35579;P35580;P35749	P35579	P35579	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.64438	1960.91131	-0.050175	-3.2846E-05	-0.037296	-2.4416E-05	-0.08747	-5.7262E-05	654.644401625441	15.349	0.088665	15.349	15.322	15.411	0	615	22	0.912521036363781	0.0142003243693484	0.912521036363781	552.090162101878	0	8.59142865814158						154	11	3	NaN	NaN	NaN	1.6579E-05	1	30938	105.08	97.113	1	32581			19399	972	16367	16840	19399	19399		
TQLEELEDELQATEDAK	17	Unmodified	_TQLEELEDELQATEDAK_			0	0	0	P35579;P35580;P35749	P35579	P35579	MYH9;MYH10;MYH11	Myosin-9;Myosin-10;Myosin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.462932	1960.91131	1.7465	0.0017142	0.28637	0.00028106	2.0329	0.0019952	981.964715021435	15.358	0.28395	15.358	15.269	15.553	0	225	130	1.17390432875292	0.085738640363177	1.17390432875292	473.489262085421	0	34.5823118319146						1784	33	6	NaN	NaN	NaN	3.2002E-19	1	30939	199.04	184.64	1	569060			19400	972	16367	16840	19400	19400		
TQLEQLYQWAQVK	13	Unmodified	_TQLEQLYQWAQVK_			0	0	0	P48507	P48507	P48507	GCLM	Glutamate--cysteine ligase regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.622745	1633.84641	-1.4743	-0.00080441	-1.2988	-0.00070863	-2.773	-0.001513	545.622289196078	15.154	0.088691	15.154	15.118	15.207	0	747	22	0.822982596624503	0.0142873361066338	0.822982596624503	498.617033152232	0	8.65620873437359						188	11	4	NaN	NaN	NaN	0.017397	1	22597	56.202	40.323	1	39769			19401	1109	16368	16841	19401	19401		
TQLEWTEAILEDEQTQR	17	Unmodified	_TQLEWTEAILEDEQTQR_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.50547	2088.99638	1.6492	0.0017242	4.1156	0.0043029	5.7648	0.0060271	1046.01102485828	15.189	0.062086	15.189	15.171	15.234	1.7764E-15	183	46	1.20177511391933	0.0298349197406598	1.20177511391933	484.521874734226	0	12.0285992594285						183	8	3	NaN	NaN	NaN	0.0022154	1	33166	53.773	51.802	1	48798			19402	3158	16369	16842	19402	19402		
TQLLQDVQDENK	12	Unmodified	_TQLLQDVQDENK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.85972	1429.70489	2.1102	0.0015106	1.0091	0.0007224	3.1194	0.002233	715.859817959875	7.4117	0.18617	7.4117	7.3496	7.5358	0	486	55	0.999498404980629	0.0363009499025385	0.999498404980629	404.194317619723	0	14.6800010902355						505	22	3	NaN	NaN	NaN	0.00029621	1	16379	79.889	74.023	1	159050			19403	2167	16370	16843	19403	19403		
TQLQHSLPLLLICDNLR	17	Unmodified	_TQLQHSLPLLLICDNLR_			0	0	0	Q9HC36	Q9HC36	Q9HC36	RNMTL1	rRNA methyltransferase 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.710336	2033.10918	0.0299	2.0293E-05	-1.4153	-0.00096058	-1.3854	-0.00094029	679.043441852273	16.448	0.097533	16.448	16.404	16.502	0	546	25	0.959108205975751	0.016178442079587	0.959108205975751	580.131468568036	0	9.78578152527143						200	12	4	NaN	NaN	NaN	0.0024029	1	32214	43.518	36.529	1	40787			19404	2957	16371	16844	19404	19404		
TQLYEYLQNR	10	Unmodified	_TQLYEYLQNR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.335684	1326.65681	0.97728	0.00064924	-1.3895	-0.00092309	-0.41221	-0.00027384	664.335522225847	10.206	0.21284	10.206	10.108	10.321	0	504	31	0.987393073566096	0.0201839240087274	0.987393073566096	399.596009989588	0	8.1683938400451						267	25	3	NaN	NaN	NaN	0.008922	1	13181	54.436	43.734	1	72059			19405	3357	16372	16845	19405	19405		
TQMAEVLPSPR	11	Unmodified	_TQMAEVLPSPR_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.821355	1227.62816	1.4114	0.00086775	2.4445	0.001503	3.8559	0.0023707	614.822689576505	8.3608	0.28389	8.3608	8.2366	8.5205	0	564	43	0.946969335010767	0.0283397285014204	0.946969335010767	383.555099266125	0	11.4785632191708						403	33	2	NaN	NaN	NaN	0.045235	1	10236	24.689	15.175	1	128680			19406	652	16373	16846	19406	19406		
TQMDGMSLLPILR	13	Unmodified	_TQMDGMSLLPILR_			0	0	0	P15586	P15586	P15586	GNS	N-acetylglucosamine-6-sulfatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.891454	1473.76836	0.84852	0.00062611	-3.2282	-0.002382	-2.3797	-0.0017559	737.89072105778	17.823	0.16844	17.823	17.752	17.92	0	459	40	1.01763759082241	0.0261865738228477	1.01763759082241	411.411850688408	0	10.5867421730557						473	20	5	NaN	NaN	NaN	6.4723E-05	1	17708	105.94	95.693	1	154000			19407	716	16374	16847	19407	19407		
TQMLDQEELLASTR	14	Unmodified	_TQMLDQEELLASTR_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.906344	1633.79814	1.6453	0.0013457	0.44109	0.00036077	2.0864	0.0017065	817.906774426913	11.562	0.30158	11.562	11.456	11.758	0	369	43	1.07793901817685	0.0280824869885468	1.07793901817685	435.393301799464	0	11.3428742503112						456	35	3	NaN	NaN	NaN	0.0031997	1	22594	72.031	55.744	1	191380			19408	944	16375	16848	19408	19408		
TQNDVDIADVAYYFEK	16	Unmodified	_TQNDVDIADVAYYFEK_			0	0	0	P16422	P16422	P16422	EPCAM	Epithelial cell adhesion molecule	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.941438	1889.86832	0.95951	0.00090764	0.42297	0.00040011	1.3825	0.0013078	946.443494543865	17.255	0.1419	17.255	17.211	17.353	0	282	46	1.13599383354359	0.0299581571070404	1.13599383354359	458.319258576536	0	12.0866856387661						342	17	3	NaN	NaN	NaN	0.0001079	1	29366	66.509	58.933	1	75263			19409	727	16376	16849	19409	19409		
TQNDVLHAENVK	12	Unmodified	_TQNDVLHAENVK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.349323	1366.68409	2.7297	0.0018681	-2.7371	-0.0018732	-0.0074495	-5.0981E-06	684.34770425011	4.0243	0.2217	4.0243	3.9888	4.2105	0	522	34	0.975277694896658	0.0222192115744939	0.975277694896658	394.573758233464	0	8.98935540288505						363	26	3	NaN	NaN	NaN	2.8981E-05	1	14393	110.58	92.245	1	108960			19410	962	16377	16850	19410	19410		
TQNDVLHAENVK	12	Unmodified	_TQNDVLHAENVK_			0	0	0	P35241	P35241	P35241	RDX	Radixin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.568641	1366.68409	0.49407	0.00022558	1.587	0.00072458	2.0811	0.00095016	456.569390090622	4.0243	0.20398	4.0243	3.9888	4.1928	0	750	28	0.820941264895493	0.0183745423602224	0.820941264895493	498.1957635699	0	11.1507601735233						370	24	4	NaN	NaN	NaN	0.035639	1	14394	50.297	44.431	1	139790			19411	962	16377	16850	19411	19411		
TQNPMVTGTSVLGVK	15	Unmodified	_TQNPMVTGTSVLGVK_			0	0	0	P28070	P28070	P28070	PSMB4	Proteasome subunit beta type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.411066	1530.80758	2.4446	0.0018736	-1.2612	-0.00096659	1.1834	0.00090698	766.410283537509	11.11	0.27491	11.11	10.862	11.137	0	414	49	1.04781950764076	0.0321651748456302	1.04781950764076	423.466977353099	0	12.9992706459354						296	32	2	NaN	NaN	NaN	0.0025362	1	19472	83.214	68.066	1	290700			19412	873	16378	16851	19412	19412		
TQNVLGEK	8	Unmodified	_TQNVLGEK_			0	0	0	P23396	P23396	P23396	RPS3	40S ribosomal protein S3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.742899	887.471246	-0.53331	-0.00023719	0.94697	0.00042116	0.41366	0.00018397	444.743441155453	2.9868	0.37243	2.9868	2.9247	3.2971	0	786	34	0.796423123669906	0.0224921689856458	0.796423123669906	323.949688275298	0	9.14881915778631						320	43	2	NaN	NaN	NaN	0.033429	1	2113	29.31	13.811	1	80539			19413	819	16379	16852	19413	19413		
TQPDGTSVPGEPASPISQR	19	Unmodified	_TQPDGTSVPGEPASPISQR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.473968	1922.93338	2.4163	0.0023256	-2.0838	-0.0020056	0.33247	0.00032	962.973864052768	7.4472	0.15961	7.4472	7.394	7.5536	0	291	34	1.12999890578964	0.0219844292788041	1.12999890578964	455.843464291535	0	8.86855584689198						303	19	3	NaN	NaN	NaN	0.012898	1	30113	46.823	41.124	1	54630			19414	1782	16380	16853	19414	19414		
TQQAAQANITLQEQIEAIHK	20	Unmodified	_TQQAAQANITLQEQIEAIHK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.729113	2234.16551	1.1953	0.00089138	0.41696	0.00031094	1.6123	0.0012023	746.063901300522	10.746	0.12413	10.746	10.711	10.835	0	513	37	0.981336640919867	0.0242307604673273	0.981336640919867	593.214581574095	0	14.6474103100583						342	15	4	NaN	NaN	NaN	1.0179E-07	1	35030	106.79	105.45	1	89629			19415	1852	16381	16854	19415	19415		
TQQGAALQNYNNELVK	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TQQGAALQNYNNELVK_			1	0	0	O43805	O43805	O43805	SSNA1	Sjoegren syndrome nuclear autoantigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.960497	1831.90644	1.348	0.0012361	0.11734	0.0001076	1.4653	0.0013437	917.461271234929	11.225	0.04435	11.225	11.199	11.243	0	159	25	1.21767724410157	0.015889045666919	1.21767724410157	491.387879347376	0	6.41194905541789						91	6	3	NaN	NaN	NaN	3.891E-09	1	28025	106.97	100.77	1	13258			19416	231	16382	16855	19416	19416		
TQQLLLATLQEAATTQENVAWR	22	Unmodified	_TQQLLLATLQEAATTQENVAWR_			0	0	0	Q6UW78	Q6UW78	Q6UW78	UQCC3	Ubiquinol-cytochrome-c reductase complex assembly factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	829.10636	2484.29725	0.93923	0.00077872	-0.42142	-0.0003494	0.5178	0.00042932	829.439905816589	18.887	0.062067	18.887	18.869	18.931	0	378	22	1.07192009927972	0.0140480177852844	1.07192009927972	647.568920945854	0	8.48669571991195						81	8	3	NaN	NaN	NaN	0.014336	1	36751	27.236	26.425	1	15777			19417	2086	16383	16856	19417	19417		
TQQQVEAEVTNIK	13	Unmodified	_TQQQVEAEVTNIK_			0	0	0	Q9H9Q2	Q9H9Q2	Q9H9Q2	COPS7B	COP9 signalosome complex subunit 7b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.388645	1486.76274	1.6395	0.0012204	-1.1921	-0.00088742	0.44737	0.00033302	744.387826876146	7.1457	0.13299	7.1457	7.1014	7.2343	0	438	31	1.03173026378327	0.0201226639147589	1.03173026378327	417.075335955209	0	8.13455522937426						287	16	4	NaN	NaN	NaN	9.6163E-12	1	18136	179.98	151.34	1	85967			19418	2938	16384	16857	19418	19418		
TQSPCFGDDDPAK	13	Unmodified	_TQSPCFGDDDPAK_			0	0	0	Q12765	Q12765	Q12765	SCRN1	Secernin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.301181	1436.58781	1.6673	0.0011993	4.1048	0.0029526	5.7721	0.0041519	719.304755396889	5.2391	0.18625	5.2391	5.1415	5.3278	0	498	40	0.991429299781895	0.0262300352853753	0.991429299781895	400.912775918497	0	10.6068645147095						353	22	3	NaN	NaN	NaN	0.036321	1	16574	23.931	21.63	1	77966			19419	1591	16385	16858	19419	19419		
TQSSLVPALTDFVR	14	Unmodified	_TQSSLVPALTDFVR_			0	0	0	O60888	O60888	O60888	CUTA	Protein CutA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.417205	1532.81986	1.2752	0.00097858	-0.78184	-0.0006	0.49331	0.00037858	767.416949256214	16.661	0.39902	16.661	16.44	16.839	0	438	64	1.03173026378327	0.042237198940938	1.03173026378327	416.959744323462	0	17.0695891063366						1460	46	5	NaN	NaN	NaN	0.00018233	1	19523	63.908	55.435	1	846500			19420	293	16386	16859	19420	19420		
TQTAIASEDMPNTLTEAEK	19	Unmodified	_TQTAIASEDMPNTLTEAEK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.48588	2048.95722	2.1974	0.0022534	-1.8835	-0.0019315	0.31395	0.00032195	1025.98711656119	9.9573	0.12412	9.9573	9.913	10.037	0	201	73	1.18983705239708	0.0477653906585063	1.18983705239708	479.770701482462	0	19.2601456952843						672	15	4	NaN	NaN	NaN	3.3579E-11	1	32517	142.32	130.15	1	153690			19421	1511	16387	16860	19421	19421		
TQTAIASEDMPNTLTEAEK	19	Oxidation (M)	_TQTAIASEDM(Oxidation (M))PNTLTEAEK_	TQTAIASEDM(1)PNTLTEAEK	TQTAIASEDM(87)PNTLTEAEK	0	1	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.48334	2064.95213	2.1969	0.0022704	-0.17022	-0.00017592	2.0267	0.0020945	1033.482096612	7.2432	0.06207	7.2432	7.2077	7.2698	0	198	19	1.1918274123006	0.0119429798452311	1.1918274123006	480.548201012825	0	4.81544342756791						52	8	2	NaN	NaN	NaN	4.3165E-10	1	32785	86.952	82.135	1	8332.4			19422	1511	16387	16861	19422	19422	534	
TQTPPLGQTPQLGLK	15	Unmodified	_TQTPPLGQTPQLGLK_			0	0	0	P78344	P78344	P78344	EIF4G2	Eukaryotic translation initiation factor 4 gamma 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.94613	1577.87771	2.5315	0.0019997	0.6569	0.00051891	3.1884	0.0025187	789.946628705003	10.72	0.20393	10.72	10.64	10.844	0	357	40	1.08596037261705	0.0260640179471912	1.08596037261705	438.763907753399	0	10.5307252959008						469	24	3	NaN	NaN	NaN	0.00011429	1	20918	96.313	91.758	1	131000			19423	1457	16388	16862	19423	19423		
TQTPPVEENVTQK	13	Unmodified	_TQTPPVEENVTQK_			0	0	0	Q6P1Q9	Q6P1Q9	Q6P1Q9	METTL2B	Methyltransferase-like protein 2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.87537	1469.73619	2.0466	0.001506	-1.6814	-0.0012373	0.36513	0.00026869	735.874107726691	4.7071	0.14187	4.7071	4.6627	4.8046	0	462	55	1.01562323939346	0.0362808886855345	1.01562323939346	410.607957774543	0	14.6680590120305						327	17	3	NaN	NaN	NaN	0.002595	1	17575	44.598	35.083	1	71478			19424	2062	16389	16863	19424	19424		
TQTPPVSPAPQPTEER	16	Unmodified	_TQTPPVSPAPQPTEER_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.93649	1733.85843	2.6557	0.002305	-2.0278	-0.00176	0.62794	0.00054501	867.934831481317	5.3012	0.23943	5.3012	5.2657	5.5051	0	360	82	1.08395544855938	0.0542076750760496	1.08395544855938	437.61091494207	0	21.8845436114923						910	28	4	NaN	NaN	NaN	0.040012	1	25441	24.922	23.959	1	196020			19425	1742	16390	16864	19425	19425		
TQTSDPAMLPTMIGLLAEAGVR	22	Unmodified	_TQTSDPAMLPTMIGLLAEAGVR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	758.060706	2271.16029	0.78709	0.00059666	-0.67748	-0.00051357	0.1096	8.3087E-05	758.394824371245	20.102	0.026595	20.102	20.084	20.111	0	414	67	1.04781950764076	0.0442393363640883	1.04781950764076	633.339531498274	0	26.7398348306301						157	4	5	NaN	NaN	NaN	0.009534	1	35375	69.369	63.164	1	34153			19426	189	16391	16865	19426	19426		
TQTVENVEHLQTR	13	Unmodified	_TQTVENVEHLQTR_			0	0	0	O43156	O43156	O43156	TTI1	TELO2-interacting protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.897168	1553.77978	2.3393	0.0018197	-1.857	-0.0014445	0.48232	0.00037519	777.895135009457	4.9199	0.053187	4.9199	4.9021	4.9553	0	381	22	1.06991323971056	0.0140499548984649	1.06991323971056	432.338667756313	0	5.67741248298034						94	7	3	NaN	NaN	NaN	4.1139E-08	1	20178	128.41	108.08	1	18592			19427	184	16392	16866	19427	19427		
TQTVTISDNANAVK	14	Unmodified	_TQTVTISDNANAVK_			0	0	0	P11171	P11171	P11171	EPB41	Protein 4.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.38082	1460.74709	2.1138	0.001546	-2.0753	-0.0015178	0.038488	2.8149E-05	731.37881324165	5.6115	0.097596	5.6115	5.576	5.6736	0	450	31	1.02367897599655	0.020133781351245	1.02367897599655	413.888578169503	0	8.14038612889374						171	12	3	NaN	NaN	NaN	1.3308E-05	1	17299	106	79.056	1	51659			19428	642	16393	16867	19428	19428		
TQVTVQYMQDR	11	Unmodified	_TQVTVQYMQDR_			0	0	0	P31153	P31153	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.832451	1367.65035	1.7389	0.0011909	0.4026	0.00027571	2.1415	0.0014666	684.833000267757	6.7023	0.22165	6.7023	6.6491	6.8707	0	492	55	0.995464410099171	0.0363210277631717	0.995464410099171	402.737952825782	0	14.6945046125866						472	26	3	NaN	NaN	NaN	1.9589E-05	1	14419	115.41	97.942	1	197370			19429	921	16394	16868	19429	19429		
TQYIFNNMVLK	11	Unmodified	_TQYIFNNMVLK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.86048	1369.70641	1.0865	0.00074521	-0.4365	-0.00029938	0.65003	0.00044583	685.860903263151	13.442	0.15962	13.442	13.398	13.558	-1.7764E-15	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	409.257283411099	0	9.78400929434156						294	19	3	NaN	NaN	NaN	0.0054021	1	14485	49.16	46.057	1	115260			19430	1901	16395	16869	19430	19430		
TQYNQVPSEDFER	13	Unmodified	_TQYNQVPSEDFER_			0	0	0	P78310	P78310	P78310	CXADR	Coxsackievirus and adenovirus receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.865534	1611.71651	2.3007	0.0018563	-5.1736	-0.0041744	-2.873	-0.0023181	806.861370399602	7.5092	0.1862	7.5092	7.4472	7.6334	0	408	58	1.0518390438467	0.0381987855157915	1.0518390438467	424.900147245933	0	15.4307540542686						573	22	4	NaN	NaN	NaN	0.00048783	1	21938	69.641	27.194	1	169530			19431	1454	16396	16870	19431	19431		
TRDELEVIHLIEEHR	15	Unmodified	_TRDELEVIHLIEEHR_			0	0	1	P10155	P10155	P10155	TROVE2	60 kDa SS-A/Ro ribonucleoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	473.002345	1887.98027	-2.4092	-0.0011396	-0.089866	-4.2507E-05	-2.4991	-0.0011821	473.002413129153	11.926	0.13303	11.926	11.873	12.006	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	622.820220172367	0	13.2222810413664						289	16	4	NaN	NaN	NaN	0.0045692	1	29330	51.829	51.677	1	116240			19432	621	16397	16871	19432	19432		
TREGNDLYHEMIESGVINLK	20	Unmodified	_TREGNDLYHEMIESGVINLK_			0	0	1	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	580.291588	2317.13725	-0.92752	-0.00053823	-0.66439	-0.00038554	-1.5919	-0.00092378	580.541959036807	14.063	0.079786	14.063	14.036	14.116	0	690	19	0.86171403876517	0.012214846484207	0.86171403876517	694.382122825187	0	9.84290686947816						148	10	4	NaN	NaN	NaN	0.0025452	1	35790	33.456	31.354	1	32320			19433	541	16398	16872	19433	19433		
TREGNDLYHEMIESGVINLK	20	Unmodified	_TREGNDLYHEMIESGVINLK_			0	0	1	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	773.386358	2317.13725	1.171	0.00090564	-0.008679	-6.7122E-06	1.1623	0.00089893	773.720764277598	14.063	0.12414	14.063	14.019	14.143	0	531	55	0.969216233931596	0.0363813613911358	0.969216233931596	585.758269423857	0	21.9875426573382						762	15	6	NaN	NaN	NaN	5.1549E-16	1	35792	106.29	101.21	1	311540			19434	541	16398	16872	19434	19434		
TRYDSGQDLDEEGMNMGDFDPNNIFK	26	Unmodified	_TRYDSGQDLDEEGMNMGDFDPNNIFK_			0	0	1	Q99615	Q99615	Q99615	DNAJC7	DnaJ homolog subfamily C member 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1003.42728	3007.26002	0.99593	0.00099934	1.2483	0.0012526	2.2442	0.0022519	1003.76305262203	16.111	0.070925	16.111	16.076	16.147	0	441	31	1.02971785871157	0.0201254424104516	1.02971785871157	621.471594052552	0	12.146425032859						179	9	4	NaN	NaN	NaN	0.00095838	1	38238	24.457	24.362	1	28366			19435	2658	16399	16873	19435	19435		
TSACFEPSLDYMVTK	15	Unmodified	_TSACFEPSLDYMVTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.897131	1747.77971	2.6581	0.0023255	0.15235	0.00013329	2.8104	0.0024588	874.89718583584	13.212	0.20397	13.212	13.141	13.345	0	345	61	1.09397730668811	0.0400626050188091	1.09397730668811	441.628995438251	0	16.1729204992917						1134	24	5	NaN	NaN	NaN	5.2364E-24	1	25825	213.77	200.6	1	659600			19436	922	16400	16874	19436	19436		
TSACFEPSLDYMVTK	15	Oxidation (M)	_TSACFEPSLDYM(Oxidation (M))VTK_	TSACFEPSLDYM(1)VTK	TSACFEPSLDYM(150)VTK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.894588	1763.77462	3.3653	0.0029712	-1.5499	-0.0013684	1.8154	0.0016028	882.893909681262	11.075	0.17735	11.075	11.012	11.19	-1.7764E-15	336	61	1.09998710857178	0.0400515700611948	1.09998710857178	444.023413620184	0	16.1673120719661						1104	21	6	NaN	NaN	NaN	4.3558E-11	1	26233	152.23	139.64	1	459950			19437	922	16400	16875	19437	19437	317	
TSAGTTDPEEATR	13	Unmodified	_TSAGTTDPEEATR_			0	0	0	Q14244	Q14244	Q14244	MAP7	Ensconsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.304778	1334.595	2.6396	0.0017641	-0.28118	-0.00018791	2.3585	0.0015762	668.304677327549	2.6853	0.1951	2.6853	2.6409	2.836	0	573	46	0.940896116921038	0.0303745102206231	0.940896116921038	380.755431353643	0	12.2917498895147						253	23	2	NaN	NaN	NaN	0.04996	1	13412	14.975	9.8241	1	60582			19438	1741	16401	16876	19438	19438		
TSALENYINR	10	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSALENYINR_			1	0	0	O95777	O95777	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.806759	1221.59897	0.36846	0.00022542	-0.35101	-0.00021475	0.017445	1.0673E-05	611.806870420027	14.036	0.10641	14.036	13.992	14.099	0	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	386.854565697093	0	8.19374884572056						191	13	3	NaN	NaN	NaN	2.8607E-05	1	10064	103.8	90.977	1	49751			19439	451	16402	16877	19439	19439		
TSAQVVLDGLVDK	13	Unmodified	_TSAQVVLDGLVDK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.872099	1343.72965	1.9399	0.0013053	-2.6738	-0.0017991	-0.73386	-0.00049379	672.870869099	12.866	0.11529	12.866	12.83	12.946	0	531	31	0.969216233931596	0.0202090656110732	0.969216233931596	392.188505921482	0	8.17749741554104						231	14	3	NaN	NaN	NaN	0.00013322	1	13721	90.689	76.694	1	65979			19440	1713	16403	16878	19440	19440		
TSCEFTGDILR	11	Unmodified	_TSCEFTGDILR_			0	0	0	P21281	P21281	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.805902	1297.59725	1.3705	0.00089057	1.5183	0.00098659	2.8888	0.0018772	649.80661350755	10.179	0.18623	10.179	10.135	10.321	0	537	49	0.965173861991602	0.032338985271784	0.965173861991602	390.694088483971	0	13.0905434459084						458	22	3	NaN	NaN	NaN	0.00051159	1	12280	81.099	77.206	1	97548			19441	789	16404	16879	19441	19441		
TSDANETEDHLESLICK	17	Unmodified	_TSDANETEDHLESLICK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.630076	1960.8684	0.41776	0.00027348	-0.14162	-9.2712E-05	0.27613	0.00018076	654.964476306369	10.986	0.1596	10.986	10.942	11.101	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	522.582789114418	0	13.5477298604665						505	19	5	NaN	NaN	NaN	1.0461E-06	1	30928	78.157	75.263	1	213660			19442	1583	16405	16880	19442	19442		
TSDANINWNNLK	12	Unmodified	_TSDANINWNNLK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.341498	1388.66844	1.0102	0.00070241	2.0016	0.0013918	3.0117	0.0020942	695.342931356771	9.3011	0.19511	9.3011	9.2125	9.4076	0	501	46	0.98941132619024	0.0302654273538991	0.98941132619024	400.228400855178	0	12.2427177356979						541	23	3	NaN	NaN	NaN	3.0686E-05	1	15096	114.39	100.4	1	303070		+	19443	37	16406	16881	19443	19443		
TSDFNTFLAQEGCTK	15	Unmodified	_TSDFNTFLAQEGCTK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.888152	1717.76175	3.0036	0.0025828	1.285	0.0011049	4.2886	0.0036877	860.392366227488	11.438	0.22176	11.438	11.376	11.598	0	342	247	1.09598084995137	0.163581210281766	1.09598084995137	442.49864324397	0	66.0453726113007						1554	26	6	NaN	NaN	NaN	3.8083E-56	1	24984	281.24	222.35	1	631620			19444	3213	16407	16882	19444	19444		
TSDLIVLGLPWK	12	Unmodified	_TSDLIVLGLPWK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.39247	1340.77039	0.23636	0.00015869	0.10221	6.8625E-05	0.33857	0.00022731	671.392652151746	18.213	0.16848	18.213	18.16	18.328	0	522	64	0.975277694896658	0.0424067783017017	0.975277694896658	394.65010210836	0	17.1600760218622						559	20	4	NaN	NaN	NaN	1.3075E-09	1	13642	124.81	119.65	1	325460			19445	1634	16408	16883	19445	19445		
TSDLIVLGLPWK	12	Unmodified	_TSDLIVLGLPWK_			0	0	0	Q13148	Q13148	Q13148	TARDBP	TAR DNA-binding protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.39247	1340.77039	0.35796	0.00024033	0.54368	0.00036502	0.90165	0.00060536	671.392464674964	18.213	0.08868	18.213	18.178	18.266	0	432	40	1.035754240522	0.0261612711685622	1.035754240522	419.122181380974	0	10.5862651687923						250	11	4	NaN	NaN	NaN	2.3478E-05	1	13643	76.572	67.595	1	75814			19446	1634	16408	16883	19446	19446		
TSDLVEEYFEAHSSSK	16	Unmodified	_TSDLVEEYFEAHSSSK_			0	0	0	Q13416	Q13416	Q13416	ORC2	Origin recognition complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.915421	1827.81629	1.0955	0.0010023	2.5656	0.0023473	3.661	0.0033496	914.917685918978	11.775	0.070908	11.775	11.758	11.828	0	189	25	1.1977968526266	0.015915230866729	1.1977968526266	483.37336046631	0	6.42262384458456						115	9	3	NaN	NaN	NaN	1.0689E-08	1	27910	104.49	90.128	1	19106			19447	1662	16409	16884	19447	19447		
TSDPALCTLIVSAAADSAVR	20	Unmodified	_TSDPALCTLIVSAAADSAVR_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1009.51478	2017.015	0.34569	0.00034898	0.13781	0.00013912	0.4835	0.0004881	1010.01621189399	16.759	0.13301	16.759	16.697	16.83	0	174	34	1.20774045859593	0.02187293336483	1.20774045859593	487.041679895797	0	8.82062874886248						274	16	3	NaN	NaN	NaN	4.7762E-06	1	31933	69.224	67.75	1	67532			19448	2035	16410	16885	19448	19448		
TSDSPWFLSGSETLGR	16	Unmodified	_TSDSPWFLSGSETLGR_			0	0	0	O95071	O95071	O95071	UBR5	E3 ubiquitin-protein ligase UBR5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.415391	1738.81623	1.8943	0.0016488	2.9381	0.0025574	4.8324	0.0042062	870.419104796278	14.994	0.16848	14.994	14.932	15.101	0	351	58	1.08996939197032	0.0380620944866981	1.08996939197032	440.028875380359	0	15.3659550029446						453	20	4	NaN	NaN	NaN	1.3553E-08	1	25562	106.11	97.738	1	87645			19449	402	16411	16886	19449	19449		
TSDTIAPWFHGILTLK	16	Unmodified	_TSDTIAPWFHGILTLK_			0	0	0	Q9H788	Q9H788	Q9H788	SH2D4A	SH2 domain-containing protein 4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.6612	1798.96177	-1.6066	-0.00096504	0.61239	0.00036784	-0.99425	-0.00059721	600.661971748886	17.468	0.097514	17.468	17.424	17.521	0	711	22	0.847456455381371	0.0142655083494234	0.847456455381371	513.048940646403	0	8.63631859782163						136	12	2	NaN	NaN	NaN	0.00078282	1	27194	63.766	62.803	1	30818			19450	2913	16412	16887	19450	19450		
TSEFTAAFVGR	11	Unmodified	_TSEFTAAFVGR_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.29857	1184.58259	1.2098	0.00071776	4.8673	0.0028877	6.0771	0.0036055	593.300567178436	10.41	0.21283	10.41	10.33	10.543	0	582	34	0.934820374997243	0.0222838959578864	0.934820374997243	378.787285952914	0	9.02938863561872						285	25	3	NaN	NaN	NaN	0.0040343	1	8994	78.816	35.082	1	93009			19451	2594	16413	16888	19451	19451		
TSENLALTGVDHSLPQDGSNAFISQK	26	Unmodified	_TSENLALTGVDHSLPQDGSNAFISQK_			0	0	0	O60563	O60563	O60563	CCNT1	Cyclin-T1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	910.450744	2728.3304	0.96852	0.00088179	-0.46621	-0.00042446	0.50231	0.00045733	910.784806034042	12.316	0.062087	12.316	12.29	12.352	0	465	25	1.01360860968299	0.0161181521941178	1.01360860968299	612.037025117091	0	9.73246066088336						179	8	4	NaN	NaN	NaN	5.8246E-10	1	37680	62.327	62.004	1	43954			19452	266	16414	16889	19452	19452		
TSESLCQNNMVILK	14	Unmodified	_TSESLCQNNMVILK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.90529	1635.79603	1.9327	0.0015827	-0.45398	-0.00037177	1.4788	0.001211	818.904832416022	10.197	0.20395	10.197	10.126	10.33	0	378	73	1.07192009927972	0.0481281586395639	1.07192009927972	432.957740846427	0	19.4393769178186						879	24	5	NaN	NaN	NaN	1.3578E-11	1	22661	141.44	125.16	1	282390			19453	135	16415	16890	19453	19453		
TSESTGSLPSPFLR	14	Unmodified	_TSESTGSLPSPFLR_			0	0	0	O95456	O95456	O95456	PSMG1	Proteasome assembly chaperone 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.877913	1477.74127	0.80023	0.00059207	-0.014786	-1.094E-05	0.78544	0.00058113	739.877610744829	11.598	0.16854	11.598	11.545	11.713	0	471	37	1.00957851518677	0.024187253928307	1.00957851518677	408.143497940881	0	9.77820969383168						312	20	3	NaN	NaN	NaN	1.5276E-05	1	17823	88.24	77.99	1	89771			19454	436	16416	16891	19454	19454		
TSEVPYAGINIGPVHK	16	Unmodified	_TSEVPYAGINIGPVHK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.449037	1680.88352	2.3503	0.0019776	-1.2316	-0.0010363	1.1187	0.00094129	841.447668024285	10.339	0.079813	10.339	10.294	10.374	0	264	58	1.14797626962532	0.0379470051045476	1.14797626962532	463.573019840475	0	15.323668455236						397	10	3	NaN	NaN	NaN	5.683E-05	1	23944	88.24	87.277	1	101770			19455	288	16417	16892	19455	19455		
TSEVQDLQDEVQR	13	Unmodified	_TSEVQDLQDEVQR_			0	0	0	P42566	P42566	P42566	EPS15	Epidermal growth factor receptor substrate 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.870816	1545.72708	1.9727	0.0015266	-2.4628	-0.0019059	-0.49012	-0.00037929	774.368618675157	8.3342	0.13306	8.3342	8.2898	8.4229	0	438	25	1.03173026378327	0.0160981304413821	1.03173026378327	416.928585767902	0	6.50535415508813						171	16	2	NaN	NaN	NaN	0.00022447	1	19901	71.896	32.857	1	53567			19456	1050	16418	16893	19456	19456		
TSEVQELQNDLDRETSSLQELEAQK	25	Unmodified	_TSEVQELQNDLDRETSSLQELEAQK_			0	0	1	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	964.135261	2889.38395	0.37902	0.00036542	0.39256	0.00037848	0.77158	0.00074391	964.469726534332	16.874	0.070939	16.874	16.839	16.91	0	438	31	1.03173026378327	0.0201254424104516	1.03173026378327	622.80313202401	0	12.1487068922804						217	9	4	NaN	NaN	NaN	1.3121E-09	1	38060	64.56	62.535	1	42060			19457	3170	16419	16894	19457	19457		
TSFEDGSGECEVFCK	15	Unmodified	_TSFEDGSGECEVFCK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.348002	1750.68145	2.6043	0.0022822	-0.69133	-0.00060584	1.9129	0.0016764	876.347524119853	8.8044	0.1953	8.8044	8.7511	8.9464	0	372	46	1.07593298845566	0.030094602206975	1.07593298845566	434.339000577991	0	12.1487672425877						773	23	6	NaN	NaN	NaN	7.1723E-33	1	25898	220.81	219.93	1	377700			19458	450	16420	16895	19458	19458		
TSFLDDAFR	9	Unmodified	_TSFLDDAFR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.258914	1070.50327	1.2264	0.00065767	-1.8322	-0.00098251	-0.60575	-0.00032484	536.257708784105	12.884	0.17736	12.884	12.839	13.017	0	666	40	0.877991458330206	0.0264342930913768	0.877991458330206	356.196461051622	0	10.7242519960923						343	21	4	NaN	NaN	NaN	0.0062155	1	5963	51.864	43.101	1	137730			19459	1737	16421	16896	19459	19459		
TSFQMAGEWLK	11	Unmodified	_TSFQMAGEWLK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.315906	1296.61726	1.0043	0.00065208	-2.2779	-0.0014791	-1.2736	-0.00082698	649.315143568595	13.451	0.20395	13.451	13.389	13.593	0	555	49	0.953040030838688	0.0323703311033066	0.953040030838688	385.785504731355	0	13.10333681579						422	24	4	NaN	NaN	NaN	0.00088532	1	12249	53.028	49.42	1	109840			19460	2947	16422	16897	19460	19460		
TSFTPVGDVFELNFMNVK	18	Unmodified	_TSFTPVGDVFELNFMNVK_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1023.00606	2043.99756	0.97359	0.00099599	0.62738	0.00064181	1.601	0.0016378	1023.50867924368	19.649	0.062075	19.649	19.623	19.685	0	153	79	1.22165005014568	0.0516677795684457	1.22165005014568	492.606498057768	0	20.834021946463						386	8	4	NaN	NaN	NaN	1.7661E-10	1	32420	91.939	84.363	1	88470			19461	519	16423	16898	19461	19461		
TSFVNFTDICK	11	Unmodified	_TSFVNFTDICK_			0	0	0	P20042	P20042	P20042	EIF2S2	Eukaryotic translation initiation factor 2 subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.318645	1330.62274	1.6491	0.0010988	0.30297	0.00020188	1.952	0.0013007	666.318801760543	12.751	0.28377	12.751	12.653	12.937	0	519	55	0.97729762293174	0.036351175801219	0.97729762293174	395.498242153565	0	14.7107961712514						1059	33	7	NaN	NaN	NaN	0.00049419	1	13307	62.271	50.314	1	492940			19462	776	16424	16899	19462	19462		
TSGNVEDDLIIFPDDCEFK	19	Unmodified	_TSGNVEDDLIIFPDDCEFK_			0	0	0	Q16186	Q16186	Q16186	ADRM1	Proteasomal ubiquitin receptor ADRM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1107.49899	2212.98343	0.44976	0.00049811	1.7371	0.0019238	2.1869	0.0024219	1108.00303861517	16.839	0.13311	16.839	16.794	16.927	0	132	61	1.23554629282893	0.0396954012636659	1.23554629282893	497.953125496813	0	15.9981453077206						537	16	4	NaN	NaN	NaN	0.00048806	1	34818	57.62	57.185	1	121510			19463	1878	16425	16900	19463	19463		
TSGTLISFIYPAQNPELLNK	20	Unmodified	_TSGTLISFIYPAQNPELLNK_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1103.59134	2205.16813	0.64384	0.00071054	-0.64868	-0.00071588	-0.0048376	-5.3388E-06	1104.09169507811	17.752	0.097532	17.752	17.708	17.805	0	72	70	1.27517645957152	0.0455466139256677	1.27517645957152	513.936350829869	0	18.3567226150645						599	12	4	NaN	NaN	NaN	3.1388E-07	1	34739	95.656	88.08	1	125720			19464	1664	16426	16901	19464	19464		
TSGVPSGFNFTAPPVLGK	18	Unmodified	_TSGVPSGFNFTAPPVLGK_			0	0	0	P35658	P35658	P35658	NUP214	Nuclear pore complex protein Nup214	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.469969	1774.92539	2.0045	0.0017809	-1.6687	-0.0014826	0.33576	0.00029831	888.468352402497	15.189	0.097533	15.189	15.154	15.251	0	315	58	1.11400032671325	0.0380149492667927	1.11400032671325	449.657988276208	0	15.3444529609445						341	12	3	NaN	NaN	NaN	0.063216	1	26545	12.851	12.112	1	74621			19465	978	16427	16902	19465	19465		
TSGVVTSCTGVLPQLSMVK	19	Unmodified	_TSGVVTSCTGVLPQLSMVK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.513193	1963.01183	1.7754	0.0017444	-0.2441	-0.00023983	1.5313	0.0015045	982.513205052964	14.223	0.20394	14.223	14.125	14.329	1.7764E-15	222	37	1.17589687683038	0.0239089385637625	1.17589687683038	474.28938269932	0	9.64349505117247						623	24	4	NaN	NaN	NaN	2.244E-26	1	30987	153.05	133.16	1	204180			19466	1144	16428	16903	19466	19466		
TSIAIDTIINQK	12	Unmodified	_TSIAIDTIINQK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.874642	1315.73473	0.88989	0.00058632	0.38085	0.00025093	1.2707	0.00083726	658.875111814448	12.157	0.2838	12.157	12.068	12.352	0	513	58	0.981336640919867	0.0383468163540439	0.981336640919867	397.178959363853	0	15.5202078260722						710	33	5	NaN	NaN	NaN	2.6832E-17	1	12856	204.86	172.91	1	525540			19467	840	16429	16904	19467	19467		
TSIEDQDELSSLLQVPLVAGTVNR	24	Unmodified	_TSIEDQDELSSLLQVPLVAGTVNR_			0	0	0	P56537	P56537	P56537	EIF6	Eukaryotic translation initiation factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	862.120335	2583.33918	2.3246	0.0020041	-0.24035	-0.00020721	2.0843	0.0017969	862.454803673222	19.712	0.12413	19.712	19.649	19.774	0	336	40	1.09998710857178	0.0260424797711383	1.09998710857178	664.383057388282	0	15.729441006619						385	15	4	NaN	NaN	NaN	0.00039614	1	37174	89.489	82.353	1	150640			19468	1286	16430	16905	19468	19468		
TSIFWNDVK	9	Unmodified	_TSIFWNDVK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.284931	1108.55531	0.60034	0.00033336	-2.9286	-0.0016262	-2.3282	-0.0012928	555.284611561825	11.27	0.36361	11.27	11.154	11.518	0	654	55	0.886123392477847	0.0365784873736561	0.886123392477847	359.338745255488	0	14.8332251103752						784	42	4	NaN	NaN	NaN	0.00039098	1	6946	93.467	66.521	1	387070			19469	1280	16431	16906	19469	19469		
TSIHEAMEQQSISISK	16	Unmodified	_TSIHEAMEQQSISISK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.964731	1787.87236	-0.45121	-0.00026935	0.10672	6.3709E-05	-0.34448	-0.00020565	596.964655514774	7.6334	0.10646	7.6334	7.5979	7.7044	0	744	64	0.82502364452135	0.0428262918246602	0.82502364452135	499.491821839061	0	25.9282054134599						426	13	5	NaN	NaN	NaN	7.2875E-05	1	26921	79.795	68.313	1	118470			19470	1144	16432	16907	19470	19470		
TSIHEAMEQQSISISK	16	Unmodified	_TSIHEAMEQQSISISK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.943458	1787.87236	2.8248	0.002528	-1.5892	-0.0014222	1.2356	0.0011058	894.941405471079	7.6245	0.15968	7.6245	7.589	7.7487	0	300	49	1.12400150285141	0.0320059751751898	1.12400150285141	453.669421053231	0	12.9182498343082						457	19	5	NaN	NaN	NaN	0.0011006	1	26922	58.338	40.923	1	127410			19471	1144	16432	16907	19471	19471		
TSILAAANPISGHYDR	16	Unmodified	_TSILAAANPISGHYDR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.433918	1684.85328	2.5271	0.0021314	-1.4985	-0.0012639	1.0285	0.00086751	843.432845294187	10.117	0.11526	10.117	10.073	10.188	0	267	28	1.14597988355104	0.0179699474696835	1.14597988355104	462.757929253166	0	7.25644123358518						284	14	4	NaN	NaN	NaN	5.7161E-09	1	24051	126.17	121.93	1	83087			19472	1757	16433	16908	19472	19472		
TSILAAANPISGHYDRSK	18	Unmodified	_TSILAAANPISGHYDRSK_			0	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.997414	1899.98027	1.4305	0.0013604	7.9965	0.0076047	9.427	0.0089651	951.506262885484	19.446	0.10644	19.446	19.392	19.499	0	201	40	1.18983705239708	0.0258746838681829	1.18983705239708	480.02377988324	0	10.4387937227762						231	13	4	NaN	NaN	NaN	0.039549	1	29602	51.454	37.676	1	48114			19473	1757	16434	16909	19473	19473		
TSITDMELALPDFFK	15	Unmodified	_TSITDMELALPDFFK_			0	0	0	O75718	O75718	O75718	CRTAP	Cartilage-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.431664	1726.84877	1.4172	0.001225	-0.14488	-0.00012524	1.2723	0.0010998	864.9326694372	19.96	0.070959	19.96	19.924	19.995	0	315	34	1.11400032671325	0.0220116788084446	1.11400032671325	449.75500681877	0	8.88676826675015						143	9	4	NaN	NaN	NaN	5.1393E-24	1	25237	128.57	117.6	1	55994			19474	355	16435	16910	19474	19474		
TSLALDESLFR	11	Unmodified	_TSLALDESLFR_			0	0	0	Q86U42	Q86U42	Q86U42	PABPN1	Polyadenylate-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.33261	1250.65067	0.92119	0.00057697	-2.4396	-0.001528	-1.5184	-0.00095105	626.331000866762	14.152	0.32805	14.152	14.072	14.4	-1.7764E-15	561	55	0.948993180460448	0.0364115845953142	0.948993180460448	384.296162067791	0	14.7449238865939						450	38	4	NaN	NaN	NaN	4.5721E-05	1	10936	120.33	104.75	1	214730			19475	2161	16436	16911	19475	19475		
TSLDWWITDK	10	Unmodified	_TSLDWWITDK_			0	0	0	Q14108	Q14108	Q14108	SCARB2	Lysosome membrane protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.814053	1263.61355	0.56632	0.00035838	0.081679	5.1687E-05	0.648	0.00041006	632.81383850153	15.065	0.133	15.065	15.003	15.136	0	579	37	0.936845902828289	0.0243046547974741	0.936845902828289	379.3345941681	0	9.84110229458457						285	15	4	NaN	NaN	NaN	0.0016796	1	11320	92.732	61.814	1	82214			19476	1718	16437	16912	19476	19476		
TSLEVSLLEK	10	Unmodified	_TSLEVSLLEK_			0	0	0	O95456	O95456	O95456	PSMG1	Proteasome assembly chaperone 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.818804	1117.62306	0.016495	9.2341E-06	-2.9181	-0.0016336	-2.9016	-0.0016244	559.817748743358	11.58	0.15083	11.58	11.518	11.669	0	639	55	0.896281965493857	0.0365328548070064	0.896281965493857	363.422013184547	0	14.8132442160937						216	18	3	NaN	NaN	NaN	0.0025789	1	7208	67.881	49.544	1	60841			19477	436	16438	16913	19477	19477		
TSLGNVVLLLK	11	Unmodified	_TSLGNVVLLLK_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.868631	1155.72271	-0.25424	-0.00014717	-0.6182	-0.00035785	-0.87244	-0.00050503	578.86828630441	15.845	0.11528	15.845	15.801	15.916	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.611141858692	0	8.21487722291033						224	14	3	NaN	NaN	NaN	0.00086684	1	8235	95.311	78.854	1	73579			19478	248	16439	16914	19478	19478		
TSLLNLVDLAGSER	14	Unmodified	_TSLLNLVDLAGSER_			0	0	0	Q9NS87	Q9NS87	Q9NS87	KIF15	Kinesin-like protein KIF15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.406837	1486.79912	0.56454	0.00042025	0.95184	0.00070856	1.5164	0.0011288	744.407394131598	17.513	0.097552	17.513	17.477	17.575	0	429	28	1.03776581230406	0.0181016489291916	1.03776581230406	419.515093966257	0	7.31756130471661						173	12	3	NaN	NaN	NaN	0.035031	1	18141	30.068	25.822	1	38973			19479	3035	16440	16915	19479	19479		
TSLMNQYVNK	10	Unmodified	_TSLMNQYVNK_			0	0	0	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.300255	1196.58596	1.1948	0.00071607	-1.7672	-0.0010591	-0.57233	-0.000343	599.299827329677	6.9328	0.30154	6.9328	6.853	7.1545	0	588	34	0.93076847747433	0.0222900711025618	0.93076847747433	377.101936861215	0	9.03084836774786						457	35	5	NaN	NaN	NaN	2.7717E-05	1	9345	103.8	95.621	1	153050			19480	1180	16441	16916	19480	19480		
TSLPWQGLK	9	Unmodified	_TSLPWQGLK_			0	0	0	P48729	P48729	P48729	CSNK1A1	Casein kinase I isoform alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.290017	1028.56548	-0.22148	-0.00011413	-3.474	-0.0017901	-3.6955	-0.0019042	515.288284371676	11.305	0.088704	11.305	11.287	11.376	-1.7764E-15	717	43	0.84338031290707	0.0285330039304067	0.84338031290707	342.332072154451	0	11.5816817286361						151	11	2	NaN	NaN	NaN	0.012745	1	4956	42.835	33.442	1	47303			19481	1116	16442	16917	19481	19481		
TSLVEYLAAVTGR	13	Unmodified	_TSLVEYLAAVTGR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.380091	1378.74563	-0.18526	-0.0001279	-4.1885	-0.0028916	-4.3737	-0.0030195	690.377877095727	18.55	0.053188	18.55	18.515	18.568	0	510	22	0.983355730988811	0.0141297228120989	0.983355730988811	397.807088609225	0	5.71604325637509						53	7	3	NaN	NaN	NaN	0.067149	1	14782	22.004	17.175	1	10300			19482	3048	16443	16918	19482	19482		
TSLVEYLAAVTGR	13	Unmodified	_TSLVEYLAAVTGR_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.380091	1378.74563	0.6655	0.00045945	0.1432	9.8866E-05	0.80871	0.00055832	690.380531778436	18.55	0.062056	18.55	18.523	18.585	0	417	28	1.04580932352505	0.0180941555297223	1.04580932352505	423.072069652766	0	7.31981600888383						132	8	3	NaN	NaN	NaN	7.1532E-05	1	14783	110.88	90.651	1	31379			19483	3048	16443	16918	19483	19483		
TSLVQLLAHLTGHTLK	16	Unmodified	_TSLVQLLAHLTGHTLK_			0	0	0	Q9NU22	Q9NU22	Q9NU22	MDN1	Midasin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.008711	1731.0043	-0.95653	-0.00055289	-0.068033	-3.9324E-05	-1.0246	-0.00059221	578.008518956482	17.654	0.10641	17.654	17.61	17.716	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	530.462645970127	0	9.85317815507506						220	13	4	NaN	NaN	NaN	0.00013316	1	25367	58.338	55.05	1	47688			19484	3048	16444	16919	19484	19484		
TSMCSIQSAPPEPATLK	17	Unmodified	_TSMCSIQSAPPEPATLK_			0	0	0	P20810	P20810	P20810	CAST	Calpastatin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.442237	1816.86992	2.1504	0.0019556	3.0386	0.0027634	5.1889	0.004719	909.445148087808	8.7778	0.14198	8.7778	8.7245	8.8665	0	252	103	1.15595906938629	0.0679285871722863	1.15595906938629	466.510801324915	0	27.4139634125946						935	17	4	NaN	NaN	NaN	0.00083627	1	27647	69.327	10.989	1	194740			19485	785	16445	16920	19485	19485		
TSMESLIHHFK	11	Unmodified	_TSMESLIHHFK_			0	0	0	O75306	O75306	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.892179	1328.65471	-1.4141	-0.00062771	-1.4484	-0.00064291	-2.8625	-0.0012706	443.891580753086	8.6891	0.23962	8.6891	8.6268	8.8665	0	846	34	0.755468431110051	0.0225580498497536	0.755468431110051	458.594169131143	0	13.6934777180115						527	28	5	NaN	NaN	NaN	0.002881	1	13242	50.834	39.474	1	241390			19486	316	16446	16921	19486	19486		
TSMNVNEIFMAIAK	14	Unmodified	_TSMNVNEIFMAIAK_			0	0	0	P20339	P20339	P20339	RAB5A	Ras-related protein Rab-5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.894194	1567.77384	0.7433	0.00058341	0.013282	1.0425E-05	0.75658	0.00059383	785.396400530722	18.169	0.133	18.169	18.124	18.257	0	420	55	1.04379886199097	0.0361758396277134	1.04379886199097	421.752910597665	0	14.6170552698251						447	16	4	NaN	NaN	NaN	1.7891E-11	1	20589	150.44	4.4994	1	97262			19487	779	16447	16922	19487	19487		
TSMTEEYR	8	Unmodified	_TSMTEEYR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.721307	1015.42806	0.58543	0.00029782	3.2284	0.0016423	3.8138	0.0019402	508.72245626735	3.4567	0.13315	3.4567	3.4301	3.5633	0	705	25	0.851531465363931	0.0162977768340994	0.851531465363931	345.699679334636	0	6.61647449869355						156	16	2	NaN	NaN	NaN	0.013237	1	4631	34.931	31.473	1	34226			19488	2446	16448	16923	19488	19488		
TSNEVQYDQR	10	Unmodified	_TSNEVQYDQR_			0	0	0	Q13573	Q13573	Q13573	SNW1	SNW domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.283648	1238.55274	1.6959	0.0010519	-0.18653	-0.0001157	1.5093	0.00093621	620.284285781853	2.8006	0.1596	2.8006	2.774	2.9336	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	367.100694397462	0	6.57582455064789						189	19	3	NaN	NaN	NaN	0.0011811	1	10563	81.163	72.4	1	31918			19489	1687	16449	16924	19489	19489		
TSNTDGIDSFLDK	13	Unmodified	_TSNTDGIDSFLDK_			0	0	0	O14975	O14975	O14975	SLC27A2	Very long-chain acyl-CoA synthetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.830628	1411.6467	1.1502	0.00081298	7.4623	0.0052746	8.6125	0.0060876	707.341389127659	11.483	0.1951	11.483	11.376	11.571	0	504	52	0.987393073566096	0.0342960787015847	0.987393073566096	399.347870733605	0	13.8709358720989						342	23	4	NaN	NaN	NaN	0.043603	1	15805	35.845	22.572	1	79873			19490	132	16450	16925	19490	19490		
TSPADHGGSVGSESGGSAVDSVAGEHSVSGR	31	Unmodified	_TSPADHGGSVGSESGGSAVDSVAGEHSVSGR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	710.822398	2839.26048	1.4259	0.0010135	1.4196	0.0010091	2.8454	0.0020226	711.073918796223	5.3632	0.053183	5.3632	5.3455	5.3987	0	573	19	0.940896116921038	0.0121489600135238	0.940896116921038	757.357633546912	0	9.77908978518042						114	7	4	NaN	NaN	NaN	1.037E-06	1	37978	53.967	52.019	1	23824			19491	1991	16451	16926	19491	19491		
TSPDAFVQLALQLAHYK	17	Unmodified	_TSPDAFVQLALQLAHYK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.675509	1901.0047	0.26469	0.00016799	0.39974	0.00025371	0.66443	0.0004217	635.01028369307	19.676	0.08868	19.676	19.632	19.72	0	555	25	0.953040030838688	0.016187402676465	0.953040030838688	576.73236795033	0	9.79581001266808						205	11	4	NaN	NaN	NaN	0.057957	1	29627	18.811	15.727	1	59748			19492	1163	16452	16927	19492	19492		
TSPDAFVQLALQLAHYK	17	Unmodified	_TSPDAFVQLALQLAHYK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.509625	1901.0047	0.15419	0.00014672	0.71121	0.00067672	0.86541	0.00082344	952.011531297598	19.676	0.053194	19.676	19.649	19.703	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	516.047247188417	0	9.57978606309837						159	7	3	NaN	NaN	NaN	5.5485E-10	1	29628	135.5	125.48	1	34286			19493	1163	16452	16927	19493	19493		
TSPEIASLSWGQMK	14	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TSPEIASLSWGQMK_			1	0	0	Q9H7C9	Q9H7C9	Q9H7C9	AAMDC	Mth938 domain-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.887423	1575.76029	0.83898	0.00066186	0.72573	0.00057252	1.5647	0.0012344	788.888055200089	16.431	0.062088	16.431	16.413	16.475	0	294	22	1.12800004657306	0.0139939408517145	1.12800004657306	455.754654120847	0	5.65408103664254						83	8	3	NaN	NaN	NaN	1.0436E-05	1	20847	78.043	66.024	1	15260			19494	2915	16453	16928	19494	19494		
TSPFELYQFFVR	12	Unmodified	_TSPFELYQFFVR_			0	0	0	Q9Y2Z4	Q9Y2Z4	Q9Y2Z4	YARS2	Tyrosine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.390459	1532.76637	1.2026	0.00092283	-0.45434	-0.00034865	0.74822	0.00057418	767.3900368642	19.729	0.10639	19.729	19.676	19.782	0	432	34	1.035754240522	0.0221334029246503	1.035754240522	418.586109279443	0	8.94491632558936						252	13	4	NaN	NaN	NaN	0.00034978	1	19514	92.428	77.973	1	53183			19495	3360	16454	16929	19495	19495		
TSPHGILDILVHER	14	Unmodified	_TSPHGILDILVHER_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.62649	1585.85764	-1.2433	-0.00065848	-1.1427	-0.00060518	-2.386	-0.0012637	529.62576800193	13.043	0.11526	13.043	12.999	13.114	0	732	28	0.833184998970724	0.0183592202134729	0.833184998970724	504.926571496035	0	11.1260501919518						158	14	2	NaN	NaN	NaN	0.0038347	1	21155	58.313	56.011	1	66258			19496	2401	16455	16930	19496	19496		
TSPHGILDILVHER	14	Unmodified	_TSPHGILDILVHER_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.936096	1585.85764	1.4572	0.0011569	0.19096	0.00015161	1.6481	0.0013085	793.935436338326	13.043	0.15073	13.043	13.008	13.159	0	321	34	1.10999792833052	0.0220207732442941	1.10999792833052	448.456243162172	0	8.89673123580968						133	18	2	NaN	NaN	NaN	0.0059868	1	21156	44.82	40.292	1	31790			19497	2401	16455	16930	19497	19497		
TSPNEGLSGNPADLER	16	Unmodified	_TSPNEGLSGNPADLER_			0	0	0	P20020	P20020	P20020	ATP2B1	Plasma membrane calcium-transporting ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.894822	1655.77509	2.4519	0.0020324	-1.2082	-0.0010015	1.2437	0.0010309	828.89419327534	7.5181	0.15074	7.5181	7.4472	7.5979	0	405	46	1.05384839605172	0.03014029110692	1.05384839605172	425.615291656224	0	12.1726890111865						420	18	4	NaN	NaN	NaN	7.7804E-09	1	23209	128.68	93.902	1	114130			19498	775	16456	16931	19498	19498		
TSPVEGLSGNPADLEK	16	Unmodified	_TSPVEGLSGNPADLEK_			0	0	0	P23634	P23634	P23634	ATP2B4	Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.404492	1612.79443	2.4056	0.0019423	0.77845	0.00062852	3.184	0.0025708	807.405340593435	9.6824	0.11528	9.6824	9.6115	9.7268	0	411	43	1.04982941439551	0.0281289969730538	1.04982941439551	424.085902046092	0	11.3629041931903						318	14	3	NaN	NaN	NaN	0.0020318	1	21972	68.108	48.551	1	85203			19499	825	16457	16932	19499	19499		
TSQDFLFSQLQYLPFSNK	18	Unmodified	_TSQDFLFSQLQYLPFSNK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1082.04149	2162.06842	0.64622	0.00069923	-0.23036	-0.00024926	0.41585	0.00044997	1082.54219059081	19.632	0.062079	19.632	19.605	19.667	0	138	37	1.23157729878518	0.0238172335935567	1.23157729878518	496.426455289108	0	9.60029456478679						214	8	4	NaN	NaN	NaN	9.754E-07	1	34209	90.376	83.52	1	50119			19500	2422	16458	16933	19500	19500		
TSQDYQALTVHDNLAMK	17	Unmodified	_TSQDYQALTVHDNLAMK_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.647402	1933.92038	1.2128	0.00078304	-0.67371	-0.00043498	0.5391	0.00034807	645.981285038574	8.973	0.088692	8.973	8.9375	9.0262	0	576	43	0.938871150116794	0.0283593603705795	0.938871150116794	568.088070675551	0	17.1595583872303						204	11	2	NaN	NaN	NaN	1.2049E-06	1	30401	76.563	74.461	1	90532			19501	2687	16459	16934	19501	19501		
TSQEELLAEVVQGQSR	16	Unmodified	_TSQEELLAEVVQGQSR_			0	0	0	Q6PJT7	Q6PJT7	Q6PJT7	ZC3H14	Zinc finger CCCH domain-containing protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.452505	1772.89046	1.9511	0.0017315	-3.1832	-0.0028249	-1.2321	-0.0010934	887.448808626896	13.673	0.053171	13.673	13.655	13.708	0	333	28	1.10198982404297	0.0180219585997581	1.10198982404297	444.814000451962	0	7.27449503238375						95	7	3	NaN	NaN	NaN	0.0037769	1	26479	28.277	21.422	1	18530			19502	2078	16460	16935	19502	19502		
TSQLLETLNQLSTHTHVVDITR	22	Unmodified	_TSQLLETLNQLSTHTHVVDITR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.113515	2505.31871	1.0557	0.00088266	-0.2279	-0.00019055	0.82777	0.00069211	836.447973254712	15.908	0.097572	15.908	15.863	15.961	1.7764E-15	435	46	1.03374239103424	0.0301777503680323	1.03374239103424	624.475838627991	0	18.2301472131068						424	12	4	NaN	NaN	NaN	3.1697E-23	1	36852	119.55	110.04	1	114820			19503	1736	16461	16936	19503	19503		
TSQQLQLIDEQDSYIQSR	18	Unmodified	_TSQQLQLIDEQDSYIQSR_			0	0	0	Q13190	Q13190	Q13190	STX5	Syntaxin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.52947	2151.04439	1.1716	0.0012612	-1.2291	-0.0013231	-0.0575	-6.19E-05	1077.03027738576	11.802	0.079825	11.802	11.766	11.846	0	147	40	1.22562176648663	0.0258214732560063	1.22562176648663	494.042053791461	0	10.4085077698054						188	10	3	NaN	NaN	NaN	7.0793E-14	1	34035	89.923	81.555	1	37040			19504	1641	16462	16937	19504	19504		
TSQTVATFLDELAQK	15	Unmodified	_TSQTVATFLDELAQK_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	551.289432	1650.84647	-1.3498	-0.00074415	0.48414	0.0002669	-0.86569	-0.00047725	551.289519585301	17.406	0.088658	17.406	17.362	17.45	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	518.337202669827	0	12.338337270612						195	11	3	NaN	NaN	NaN	0.0024944	1	23081	82.437	75.297	1	46514			19505	1225	16463	16938	19505	19505		
TSRPENAIIYNNNEDFQVGQAK	22	Unmodified	_TSRPENAIIYNNNEDFQVGQAK_			0	0	1	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.74197	2507.20408	1.7941	0.0015012	-2.0848	-0.0017445	-0.29075	-0.00024329	837.074942287675	9.0174	0.10641	9.0174	8.973	9.0794	0	534	58	0.967195187796614	0.0384158376205809	0.967195187796614	584.272766854176	0	23.2066164315092						564	13	5	NaN	NaN	NaN	9.8694E-12	1	36862	111.03	102.27	1	136960			19506	888	16464	16939	19506	19506		
TSSAETPTIPLGSAVEAIK	19	Unmodified	_TSSAETPTIPLGSAVEAIK_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.501663	1870.98877	1.9105	0.0017892	0.2245	0.00021025	2.1351	0.0019995	937.003505973612	14.072	0.2483	14.072	13.957	14.205	0	198	55	1.1918274123006	0.03583387204855	1.1918274123006	480.880800829447	0	14.4583191405741						1128	29	5	NaN	NaN	NaN	6.4086E-11	1	28968	164.56	151.88	1	591460			19507	1915	16465	16940	19507	19507		
TSSAEVTIQNVIK	13	Unmodified	_TSSAEVTIQNVIK_			0	0	0	P48960	P48960	P48960	CD97	CD97 antigen;CD97 antigen subunit alpha;CD97 antigen subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.382831	1388.75111	1.2921	0.00089852	-1.3918	-0.00096785	-0.099698	-6.9328E-05	695.381586104286	10.729	0.079862	10.729	10.693	10.773	0	501	49	0.98941132619024	0.032276430046501	0.98941132619024	400.228179390826	0	13.0561845137627						243	10	3	NaN	NaN	NaN	0.0079854	1	15115	48.785	34.023	1	61215			19508	1119	16466	16941	19508	19508		
TSSAQVEGGVHSLHSYEK	18	Unmodified	_TSSAQVEGGVHSLHSYEK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.460861	1914.90717	2.0464	0.0019614	-0.30377	-0.00029116	1.7426	0.0016702	958.460379089203	4.6716	0.062081	4.6716	4.645	4.7071	0	102	37	1.25537494996371	0.0237846096492644	1.25537494996371	506.435572830991	0	9.59503964344265						195	8	4	NaN	NaN	NaN	0.00077669	1	29948	80.379	78.905	1	40544			19509	666	16467	16942	19509	19509		
TSSGLGGSTTDFLEEWK	17	Unmodified	_TSSGLGGSTTDFLEEWK_			0	0	0	Q96IZ0	Q96IZ0	Q96IZ0	PAWR	PRKC apoptosis WT1 regulator protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.925788	1813.83702	1.8088	0.0016422	2.8795	0.0026144	4.6883	0.0042566	907.928584220895	15.393	0.14197	15.393	15.331	15.473	0	279	43	1.13799159301878	0.0279705629566351	1.13799159301878	459.26547857014	0	11.2882327610861						560	17	4	NaN	NaN	NaN	4.4074E-19	1	27567	175.68	168.48	1	204000			19510	2563	16468	16943	19510	19510		
TSSMEISSILQELK	14	Unmodified	_TSSMEISSILQELK_			0	0	0	Q5SW79;Q96L14	Q5SW79	Q5SW79	CEP170;CEP170P1	Centrosomal protein of 170 kDa;Cep170-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.408188	1564.80182	0.91664	0.0007181	1.2343	0.000967	2.151	0.0016851	783.409298955702	17.637	0.088652	17.637	17.583	17.672	0	378	31	1.07192009927972	0.020067214614357	1.07192009927972	433.122654869682	0	8.10840777726833						179	11	3	NaN	NaN	NaN	0.00017425	1	20498	84.309	80.327	1	36650			19511	1981	16469	16944	19511	19511		
TSSTDLSDIPALPANPIPVIK	21	Unmodified	_TSSTDLSDIPALPANPIPVIK_			0	0	0	P51003	P51003	P51003	PAPOLA	Poly(A) polymerase alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1075.09118	2148.1678	0.59084	0.00063521	-2.4506	-0.0026346	-1.8598	-0.0019994	1075.08647676768	17.122	0.10639	17.122	17.069	17.176	0	120	58	1.2434810169581	0.0376925382781901	1.2434810169581	501.24533938859	0	15.1938058434433						477	13	3	NaN	NaN	NaN	0.00078565	1	34000	65.173	58.651	1	118150			19512	1177	16470	16945	19512	19512		
TSTVDLPIENQLLWQIDR	18	Unmodified	_TSTVDLPIENQLLWQIDR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.06549	2140.11643	1.2038	0.0012893	0.92916	0.00099519	2.133	0.0022845	1071.56790904536	18.772	0.1596	18.772	18.683	18.843	0	153	97	1.22165005014568	0.0635213981718685	1.22165005014568	492.457200453917	0	25.6059989592819						1047	19	5	NaN	NaN	NaN	5.8547E-19	1	33891	126.63	108.23	1	311960			19513	955	16471	16946	19513	19513		
TSVDAAEDYAEGVR	14	Unmodified	_TSVDAAEDYAEGVR_			0	0	0	Q02127	Q02127	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.838985	1481.66342	1.6852	0.0012501	0.86506	0.00064174	2.5502	0.0018919	741.839640713954	8.139	0.13295	8.139	8.077	8.21	0	435	28	1.03374239103424	0.0181091469845289	1.03374239103424	417.901990121928	0	7.32082637790802						221	16	3	NaN	NaN	NaN	0.00010485	1	17953	94.791	92.12	1	58340			19514	1525	16472	16947	19514	19514		
TSVIQGIHTDHNTLK	15	Unmodified	_TSVIQGIHTDHNTLK_			0	0	0	Q5U5X0	Q5U5X0	Q5U5X0	LYRM7	Complex III assembly factor LYRM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.441743	1662.86893	2.5877	0.0021541	-2.1293	-0.0017725	0.45839	0.00038158	832.440176106139	5.3012	0.053232	5.3012	5.2745	5.3278	0	291	37	1.12999890578964	0.0239813645434503	1.12999890578964	456.353867067918	0	9.68495490650184						138	7	3	NaN	NaN	NaN	2.2095E-06	1	23427	119.52	100.71	1	23667			19515	2004	16473	16948	19515	19515		
TSVIQGIHTDHNTLK	15	Unmodified	_TSVIQGIHTDHNTLK_			0	0	0	Q5U5X0	Q5U5X0	Q5U5X0	LYRM7	Complex III assembly factor LYRM7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.296921	1662.86893	0.26499	0.00014715	1.7751	0.00098572	2.0401	0.0011329	555.297884971039	5.3012	0.14191	5.3012	5.2657	5.4076	0	687	31	0.863749705078866	0.0203552522347787	0.863749705078866	523.239710297048	0	12.3307437556537						286	17	4	NaN	NaN	NaN	1.3209E-08	1	23429	121.71	106.09	1	116450			19516	2004	16473	16948	19516	19516		
TSVLAAANPIESQWNPK	17	Unmodified	_TSVLAAANPIESQWNPK_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.475783	1824.93701	2.0477	0.0018705	-0.75084	-0.00068587	1.2968	0.0011846	913.475521430323	13.265	0.16848	13.265	13.185	13.354	0	279	61	1.13799159301878	0.0399579567227417	1.13799159301878	459.244294138977	0	16.1253068501962						887	20	4	NaN	NaN	NaN	0.00021456	1	27857	52.863	43.602	1	400680			19517	950	16474	16949	19517	19517		
TSVPVDSFFSLLTSER	16	Unmodified	_TSVPVDSFFSLLTSER_			0	0	0	Q6JQN1	Q6JQN1	Q6JQN1	ACAD10	Acyl-CoA dehydrogenase family member 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.956891	1783.89923	1.7357	0.0015499	-1.7511	-0.0015636	-0.015427	-1.3775E-05	893.456663642021	19.8	0.079816	19.8	19.774	19.853	0	291	25	1.12999890578964	0.0159897747860325	1.12999890578964	456.097910873795	0	6.45390259927342						132	10	4	NaN	NaN	NaN	0.0040457	1	26803	39.166	28.915	1	20304			19518	2041	16475	16950	19518	19518		
TSVQTEDDQLIAGQSAR	17	Unmodified	_TSVQTEDDQLIAGQSAR_			0	0	0	P26232;P35221	P26232;P35221	P35221	CTNNA2;CTNNA1	Catenin alpha-2;Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	909.945044	1817.87553	2.2697	0.0020653	-2.4066	-0.0021898	-0.13684	-0.00012451	909.943307472643	7.1368	0.14186	7.1368	7.0925	7.2343	0	315	40	1.11400032671325	0.0260173856244983	1.11400032671325	449.575631581461	0	10.4998017448905						458	17	5	NaN	NaN	NaN	8.0489E-14	1	27662	150.81	126.12	1	122810			19519	959;848	16476	16951	19519	19519		
TSVTDFLR	8	Unmodified	_TSVTDFLR_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.750724	937.486896	-1.2832	-0.0006028	-0.68284	-0.00032077	-1.9661	-0.00092357	469.750415948639	11.651	0.15073	11.651	11.589	11.74	0	729	31	0.835224628594324	0.0203948812138425	0.835224628594324	339.456213805235	0	8.28899067489192						291	18	3	NaN	NaN	NaN	0.010865	1	3027	60.709	51.946	1	85315			19520	2220	16477	16952	19520	19520		
TSYEEFTHK	9	Unmodified	_TSYEEFTHK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	381.176861	1140.50875	-0.43417	-0.0001655	1.703	0.00064916	1.2689	0.00048366	381.177582056659	4.1573	0.088666	4.1573	4.1307	4.2194	0	897	22	0.720567078607086	0.0143891950564781	0.720567078607086	438.148619208108	0	8.74950595536404						110	11	3	NaN	NaN	NaN	0.045818	1	7797	33.396	24.003	1	24162			19521	2064	16478	16953	19521	19521		
TSYEEFTHK	9	Unmodified	_TSYEEFTHK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.261653	1140.50875	1.8488	0.0010561	5.6744	0.0032415	7.5231	0.0042977	571.265307207027	4.1662	0.21279	4.1662	4.1041	4.3169	0	642	40	0.894250814548268	0.0264086306406944	0.894250814548268	362.509734832132	0	10.705481655808						461	25	3	NaN	NaN	NaN	0.0088644	1	7799	60.892	52.709	1	222550			19522	2064	16478	16953	19522	19522		
TSYLTELIDR	10	Unmodified	_TSYLTELIDR_			0	0	0	Q9P289;Q9Y6E0	Q9P289;Q9Y6E0	Q9P289	STK26;STK24	Serine/threonine-protein kinase 26;Serine/threonine-protein kinase 24;Serine/threonine-protein kinase 24 36 kDa subunit;Serine/threonine-protein kinase 24 12 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.819335	1209.62412	1.2079	0.00073175	-0.20942	-0.00012687	0.99845	0.00060488	605.819222863888	13.886	0.20395	13.886	13.832	14.036	0	555	46	0.953040030838688	0.0303450838148018	0.953040030838688	386.077826980951	0	12.2928351797182						556	24	4	NaN	NaN	NaN	1.7275E-07	1	9718	126.82	93.429	1	247770			19523	3155;3462	16479	16954	19523	19523		
TTASEPVEQSEATSK	15	Unmodified	_TTASEPVEQSEATSK_			0	0	0	Q15007	Q15007	Q15007	WTAP	Pre-mRNA-splicing regulator WTAP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.870482	1563.72641	2.5953	0.0020318	-1.7871	-0.0013991	0.80824	0.00063275	782.868612478139	3.0488	0.079802	3.0488	3.0222	3.102	0	501	25	0.98941132619024	0.0161426739918176	0.98941132619024	399.786380570453	0	6.52268782162361						88	10	2	NaN	NaN	NaN	0.0036746	1	20457	55.578	48.831	1	19182			19524	1789	16480	16955	19524	19524		
TTCMSSQGSDDEQIK	15	Unmodified	_TTCMSSQGSDDEQIK_			0	0	0	Q9P0V9	Q9P0V9	Q9P0V9	SEPT10	Septin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.850909	1685.68726	2.726	0.0023003	-2.0361	-0.0017182	0.68988	0.00058216	843.848959961744	3.6253	0.062071	3.6253	3.5987	3.6608	0	411	40	1.04982941439551	0.0261360051694259	1.04982941439551	423.929716537266	0	10.5539329637386						109	8	2	NaN	NaN	NaN	1.4459E-08	1	24064	110.58	92.851	1	24883			19525	3149	16481	16956	19525	19525		
TTDDTTTDNYIAQGK	15	Unmodified	_TTDDTTTDNYIAQGK_			0	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.373389	1642.73222	2.9075	0.0023911	-2.7897	-0.0022942	0.1178	9.6879E-05	822.371369378087	4.9819	0.10641	4.9819	4.9553	5.0617	0	411	46	1.04982941439551	0.0301527697739288	1.04982941439551	424.020095428692	0	12.1785312372319						284	13	3	NaN	NaN	NaN	3.4785E-08	1	22821	130.99	119.03	1	58017			19526	2128	16482	16957	19526	19526		
TTDFSDFLSIVGCTK	15	Unmodified	_TTDFSDFLSIVGCTK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.90327	1689.79199	1.4884	0.001259	0.91976	0.00077803	2.4082	0.0020371	845.904159980231	18.47	0.13308	18.47	18.435	18.568	0	366	46	1.07994477139643	0.0300821596276293	1.07994477139643	436.081896017542	0	12.1471815542533						538	16	5	NaN	NaN	NaN	5.6274E-17	1	24202	166.71	150.83	1	214840			19527	3213	16483	16958	19527	19527		
TTDGVYEGVAIGGDRYPGSTFMDHVLR	27	Unmodified	_TTDGVYEGVAIGGDRYPGSTFMDHVLR_			0	0	1	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	729.101353	2912.37631	1.0414	0.00075926	0.68172	0.00049704	1.7231	0.0012563	729.353308614834	14.595	0.14187	14.595	14.506	14.648	1.7764E-15	468	46	1.01159370163332	0.0302361592844221	1.01159370163332	814.164813654231	0	24.335083294483						473	17	4	NaN	NaN	NaN	0.02004	1	38092	26.29	26.272	1	103670			19528	1235	16484	16959	19528	19528		
TTDGYLLR	8	Unmodified	_TTDGYLLR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.750724	937.486896	-0.018126	-8.5145E-06	0.63202	0.00029689	0.6139	0.00028838	469.751147560226	6.6313	0.24829	6.6313	6.5515	6.7998	0	729	49	0.835224628594324	0.0326363522004895	0.835224628594324	339.45620734359	0	13.2642309149253						837	29	4	NaN	NaN	NaN	0.00038787	1	3028	104.76	84.105	1	589310			19529	1338	16485	16960	19529	19529		
TTDLLTDWEK	10	Unmodified	_TTDLLTDWEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.303518	1220.59248	1.3283	0.00081202	-0.32884	-0.00020102	0.9995	0.000611	611.303302023073	12.777	0.14189	12.777	12.724	12.866	0	552	34	0.955063035883597	0.0222499784868294	0.955063035883597	386.858129505758	0	9.01258318619222						367	17	4	NaN	NaN	NaN	0.016557	1	10029	59.645	50.131	1	197070			19530	1737	16486	16961	19530	19530		
TTDTASVQNEAK	12	Unmodified	_TTDTASVQNEAK_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.804414	1263.59427	2.1032	0.0013309	-2.1175	-0.00134	-0.014275	-9.0334E-06	632.803134262095	2.4902	0.23941	2.4902	2.4636	2.703	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	371.94923552342	0	9.0328941295503						371	28	3	NaN	NaN	NaN	5.4424E-05	1	11313	101.82	75.961	1	57722			19531	3280	16487	16962	19531	19531		
TTEEALHASHGFMWYT	16	Unmodified	_TTEEALHASHGFMWYT_			0	0	0	Q9P0J0	Q9P0J0	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.917243	1879.81993	1.0508	0.00098872	1.6326	0.0015362	2.6834	0.0025249	941.420451829826	11.899	0.097562	11.899	11.864	11.961	0	231	40	1.16991841121525	0.0259173708713474	1.16991841121525	472.024588351168	0	10.4568286125051						289	12	4	NaN	NaN	NaN	0.0017726	1	29146	85.821	82.736	1	60721			19532	3145	16488	16963	19532	19532		
TTEEQVQASTPCPR	14	Unmodified	_TTEEQVQASTPCPR_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.372669	1602.73078	2.9231	0.0023454	-1.5333	-0.0012302	1.3899	0.0011152	802.37162824803	4.4411	0.15074	4.4411	4.4056	4.5563	0	456	46	1.01965166402748	0.0302069336497983	1.01965166402748	411.917420465006	0	12.2029538401726						425	18	3	NaN	NaN	NaN	4.8955E-06	1	21666	99.589	92.032	1	97873			19533	1723	16489	16964	19533	19533		
TTEMETIYDLGTK	13	Unmodified	_TTEMETIYDLGTK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.358164	1500.70178	1.1394	0.0008561	0.97815	0.00073494	2.1176	0.001591	751.359424940973	12.059	0.17737	12.059	12.006	12.183	0	432	82	1.035754240522	0.0542974937279912	1.035754240522	418.666147309583	0	21.947795739854						942	21	5	NaN	NaN	NaN	4.2972E-08	1	18538	169.81	149.62	1	307980			19534	3325	16490	16965	19534	19534		
TTEPGVTGLLLAVEGPAAK	19	Unmodified	_TTEPGVTGLLLAVEGPAAK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.509291	1823.00403	0.77769	0.00070964	0.48946	0.00044663	1.2671	0.0011563	912.50983070018	17.282	0.1685	17.282	17.202	17.371	0	255	58	1.15396378101328	0.0379157076818644	1.15396378101328	465.69369992916	0	15.3012655044471						607	20	3	NaN	NaN	NaN	5.4921E-05	1	27816	84.58	81.495	1	169510			19535	1766	16491	16966	19535	19535		
TTETQVLVASAQK	13	Unmodified	_TTETQVLVASAQK_			0	0	0	P12081	P12081	P12081	HARS	Histidine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.375006	1374.73546	1.6129	0.0011103	-0.48807	-0.00033598	1.1248	0.0007743	688.374615873286	6.5427	0.19508	6.5427	6.5072	6.7023	0	489	64	0.997481546940468	0.0423423350766804	0.997481546940468	403.533222460316	0	17.1296792130101						518	23	4	NaN	NaN	NaN	2.2833E-07	1	14651	101.45	86.297	1	174300			19536	664	16492	16967	19536	19536		
TTFDEAMADLHTLSEDSYK	19	Unmodified	_TTFDEAMADLHTLSEDSYK_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.324653	2172.95213	0.93261	0.00067644	-1.1038	-0.00080062	-0.17121	-0.00012418	725.65817973299	16.165	0.15961	16.165	16.111	16.271	0	516	100	0.979317271586824	0.0667407741189205	0.979317271586824	592.09685328009	0	40.3515831771855						1814	19	6	NaN	NaN	NaN	5.6634E-20	1	34350	220.06	168.99	1	898070			19537	933	16493	16968	19537	19537		
TTFDEAMADLHTLSEDSYK	19	Unmodified	_TTFDEAMADLHTLSEDSYK_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1087.48334	2172.95213	0.39072	0.0004249	0.86425	0.00093985	1.255	0.0013648	1087.98563819805	16.165	0.10642	16.165	16.12	16.227	0	63	73	1.28111162701928	0.0475171415249036	1.28111162701928	516.376328782498	0	19.1526847289309						607	13	3	NaN	NaN	NaN	5.9632E-05	1	34351	44.571	39.489	1	217440			19538	933	16493	16968	19538	19538		
TTFDEAMADLHTLSEDSYK	19	Oxidation (M)	_TTFDEAM(Oxidation (M))ADLHTLSEDSYK_	TTFDEAM(1)ADLHTLSEDSYK	TTFDEAM(71)ADLHTLSEDSYK	0	1	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	730.656291	2188.94704	0.70274	0.00051346	0.24601	0.00017975	0.94874	0.00069321	730.990573815285	12.653	0.070958	12.653	12.618	12.689	0	519	31	0.97729762293174	0.0202006798599824	0.97729762293174	590.848363387745	0	12.2127981840226						212	9	4	NaN	NaN	NaN	3.1614E-05	1	34556	70.552	67.837	1	47432			19539	933	16493	16969	19539	19539	327	
TTFEDLIQR	9	Unmodified	_TTFEDLIQR_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.793121	1121.57169	-0.52686	-0.00029599	-0.86153	-0.000484	-1.3884	-0.00077999	561.792252616021	11.953	0.23055	11.953	11.882	12.112	0	633	40	0.900343422309015	0.0263976438859336	0.900343422309015	365.053174140537	0	10.7031866414682						468	27	4	NaN	NaN	NaN	0.0018514	1	7309	67.464	41.007	1	169860			19540	400	16494	16970	19540	19540		
TTFFHHEYPWILSASDDQTIR	21	Unmodified	_TTFFHHEYPWILSASDDQTIR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	855.411672	2563.21319	2.077	0.0017767	0.7151	0.0006117	2.7921	0.0023884	855.746868563029	13.886	0.14185	13.886	13.815	13.957	0	468	37	1.01159370163332	0.0241839121258494	1.01159370163332	611.019844057171	0	14.6074952740117						462	17	5	NaN	NaN	NaN	4.0934E-08	1	37079	70.552	62.14	1	134380			19541	1241	16495	16971	19541	19541		
TTGEENGVEAEEWGK	15	Unmodified	_TTGEENGVEAEEWGK_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.360281	1634.70601	1.7486	0.001431	-0.43449	-0.00035557	1.3141	0.0010754	818.360353663933	6.4629	0.088673	6.4629	6.4185	6.5072	0	447	28	1.02569221487577	0.0181191516407753	1.02569221487577	414.288220833163	0	7.31852205505157						193	11	4	NaN	NaN	NaN	0.042181	1	22604	21.668	18.163	1	32322			19542	79	16496	16972	19542	19542		
TTGEVVSGVVSK	12	Unmodified	_TTGEVVSGVVSK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.819335	1161.62412	0.62136	0.00036152	1.4479	0.00084241	2.0693	0.0012039	581.820246461363	5.381	0.097546	5.381	5.3544	5.4519	0	615	25	0.912521036363781	0.0162323175227004	0.912521036363781	369.835771539236	0	6.5787981160409						154	12	3	NaN	NaN	NaN	0.056542	1	8391	38.1	34.284	1	52690			19543	1713	16497	16973	19543	19543		
TTGFGMIYDSLDYAK	15	Unmodified	_TTGFGMIYDSLDYAK_			0	0	0	P62847	P62847	P62847	RPS24	40S ribosomal protein S24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.392538	1680.77052	1.9721	0.0016593	2.3926	0.0020131	4.3647	0.0036724	841.395001040484	15.952	0.31922	15.952	15.89	16.209	0	282	64	1.13599383354359	0.0419587426730448	1.13599383354359	458.734539848453	0	16.943687495818						1709	37	6	NaN	NaN	NaN	3.8145E-25	1	23932	205.09	183.94	1	2207900			19544	1403	16498	16974	19544	19544		
TTGFGMIYDSLDYAK	15	Oxidation (M)	_TTGFGM(Oxidation (M))IYDSLDYAK_	TTGFGM(1)IYDSLDYAK	TTGFGM(150)IYDSLDYAK	0	1	0	P62847	P62847	P62847	RPS24	40S ribosomal protein S24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.389996	1696.76544	1.8961	0.0016105	1.9845	0.0016856	3.8805	0.0032961	849.391742974519	14.125	0.21281	14.125	14.063	14.276	0	306	58	1.12000185836644	0.0379992536574683	1.12000185836644	452.241831017797	0	15.3435924440589						954	25	6	NaN	NaN	NaN	9.5494E-08	1	24394	147.02	125.65	1	566280			19545	1403	16498	16975	19545	19545	503	
TTGIVETHFTFK	12	Unmodified	_TTGIVETHFTFK_			0	0	0	P04899;P09471;P08754;P63096	P04899;P08754;P63096	P04899	GNAI2;GNAO1;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.910115	1379.70852	-2.1161	-0.00097533	1.4776	0.00068103	-0.63852	-0.0002943	460.911090713862	9.3898	0.12413	9.3898	9.3366	9.4608	0	771	31	0.806643990516186	0.0204346260342226	0.806643990516186	489.473122536356	0	12.3997703205265						246	15	4	NaN	NaN	NaN	0.038537	1	14810	26.579	25.205	1	62177			19546	520;590;1425	16499	16976	19546	19546		
TTGIVETHFTFK	12	Unmodified	_TTGIVETHFTFK_			0	0	0	P04899;P09471;P08754;P63096	P04899;P08754;P63096	P04899	GNAI2;GNAO1;GNAI3;GNAI1	Guanine nucleotide-binding protein G(i) subunit alpha-2;Guanine nucleotide-binding protein G(o) subunit alpha;Guanine nucleotide-binding protein G(k) subunit alpha;Guanine nucleotide-binding protein G(i) subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.861534	1379.70852	1.0542	0.00072831	0.29267	0.00020219	1.3469	0.00093051	690.862381487728	9.381	0.31917	9.381	9.3455	9.6647	0	453	40	1.02166545906632	0.0261793407485973	1.02166545906632	413.302038008991	0	10.5905262716969						501	37	4	NaN	NaN	NaN	0.0066565	1	14811	54.27	48.572	1	200080			19547	520;590;1425	16499	16976	19547	19547		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Unmodified	_TTGIVMDSGDGVTHTVPIYEGYALPHAILR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1061.87629	3182.60703	0.47604	0.0005055	0.073517	7.8066E-05	0.54956	0.00058356	1062.54246609996	15.624	0.16846	15.624	15.535	15.704	0	99	121	1.25735632164274	0.079293032249661	1.25735632164274	758.666974161077	0	47.8440389676585						1254	20	5	NaN	NaN	NaN	0.0015273	1	38442	23.308	22.289	1	261660			19548	1310;1436	16500	16977	19548	19548		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Unmodified	_TTGIVMDSGDGVTHTVPIYEGYALPHAILR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	796.659035	3182.60703	0.9739	0.00077587	0.23986	0.00019109	1.2138	0.00096696	796.909801239715	15.287	0.13297	15.287	15.207	15.34	0	507	163	0.985374541851584	0.109084038621699	0.985374541851584	792.742761133775	0	87.7590990021882						2212	16	5	NaN	NaN	NaN	0.011587	1	38443	37.242	36.507	1	446120			19549	1310;1436	16500	16977	19549	19549		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Unmodified	_TTGIVMDSGDGVTHTVPIYEGYALPHAILR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1061.87629	3182.60703	0.6763	0.00071815	1.4354	0.0015242	2.1117	0.0022423	1062.21229343877	15.269	0.33704	15.269	15.189	15.526	0	60	163	1.28308947459206	0.107089778839015	1.28308947459206	774.193907274343	0	64.6161128668609						5070	39	8	NaN	NaN	NaN	2.4889E-82	1	38444	337.04	330.79	1	4063100			19550	1310;1436	16500	16977	19550	19550		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Unmodified	_TTGIVMDSGDGVTHTVPIYEGYALPHAILR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	796.659035	3182.60703	1.265	0.0010078	2.1883	0.0017433	3.4533	0.0027511	796.911954339052	15.952	0.13301	15.952	15.908	16.041	0	339	19	1.09798411722691	0.0120187763173571	1.09798411722691	883.338178949201	0	9.66921453489294						107	16	3	NaN	NaN	NaN	0.056668	1	38446	4.3207	4.3111	1	21965			19551	1310;1436	16500	16977	19551	19551		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Unmodified	_TTGIVMDSGDGVTHTVPIYEGYALPHAILR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	796.659035	3182.60703	2.2302	0.0017767	1.7472	0.0013919	3.9774	0.0031686	796.91123624872	15.615	0.31036	15.615	15.517	15.828	0	339	40	1.09798411722691	0.0260460676127405	1.09798411722691	883.338180646887	0	20.9542976233138						1203	36	8	NaN	NaN	NaN	1.6932E-06	1	38447	55.094	55.008	1	604120			19552	1310;1436	16500	16977	19552	19552		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Unmodified	_TTGIVMDSGDGVTHTVPIYEGYALPHAILR_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	796.659035	3182.60703	2.5018	0.0019931	1.8275	0.0014559	4.3293	0.003449	796.911501406504	15.278	0.55874	15.278	14.985	15.544	0	345	130	1.09397730668811	0.0862119235919876	1.09397730668811	880.114664920044	0	69.3582744179415						4263	64	8	NaN	NaN	NaN	9.6526E-29	1	38448	263.14	255.14	1	9085200			19553	1310;1436	16500	16977	19553	19553		
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Oxidation (M)	_TTGIVM(Oxidation (M))DSGDGVTHTVPIYEGYALPHAILR_	TTGIVM(1)DSGDGVTHTVPIYEGYALPHAILR	TTGIVM(250)DSGDGVTHTVPIYEGYALPHAILR	0	1	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1067.20793	3198.60195	1.4261	0.0015219	-0.67402	-0.00071932	0.75206	0.00080261	1067.54182613369	14.489	0.19507	14.489	14.418	14.613	0	69	139	1.27715511956461	0.0911870423089562	1.27715511956461	770.596447610979	0	55.0194802455856						2983	23	7	NaN	NaN	NaN	2.4919E-46	1	38459	254.2	251.7	1	1442300			19554	1310;1436	16500	16978	19554	19554	468	
TTGIVMDSGDGVTHTVPIYEGYALPHAILR	30	Oxidation (M)	_TTGIVM(Oxidation (M))DSGDGVTHTVPIYEGYALPHAILR_	TTGIVM(1)DSGDGVTHTVPIYEGYALPHAILR	TTGIVM(210)DSGDGVTHTVPIYEGYALPHAILR	0	1	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	800.657764	3198.60195	2.9029	0.0023242	1.7486	0.0014	4.6515	0.0037243	800.910472241696	14.489	0.39902	14.489	14.365	14.764	0	345	103	1.09397730668811	0.0681628145197419	1.09397730668811	880.095512944404	0	54.8364091665658						3016	46	7	NaN	NaN	NaN	1.7542E-22	1	38460	209.03	203.91	1	4733500			19555	1310;1436	16500	16978	19555	19555	468	
TTGTPPDSSLVTYELHSRPEQDK	23	Unmodified	_TTGTPPDSSLVTYELHSRPEQDK_			0	0	1	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	640.314683	2557.22963	1.1215	0.00071811	0.27238	0.00017441	1.3939	0.00089252	640.566031285205	8.618	0.23075	8.618	8.547	8.7778	0	606	31	0.918606045818476	0.0202819613609688	0.918606045818476	739.812714891345	0	16.3343720260523						602	27	5	NaN	NaN	NaN	0.00080307	1	37052	40.372	35.03	1	125510			19556	1684	16501	16979	19556	19556		
TTHFVEGGDAGNR	13	Unmodified	_TTHFVEGGDAGNR_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.815647	1359.61674	2.5496	0.0017358	-4.2688	-0.0029062	-1.7192	-0.0011705	680.81438165986	2.6764	0.097562	2.6764	2.6498	2.7474	0	582	28	0.934820374997243	0.0182297522282956	0.934820374997243	378.225396708432	0	7.3757006724033						136	12	3	NaN	NaN	NaN	0.025529	1	14168	34.193	28.327	1	23301			19557	752	16502	16980	19557	19557		
TTHFVEGGDAGNR	13	Unmodified	_TTHFVEGGDAGNR_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	454.212857	1359.61674	0.40215	0.00018266	0.25903	0.00011765	0.66118	0.00030032	454.212919756903	2.6764	0.20397	2.6764	2.6498	2.8538	0	855	31	0.749315378969369	0.0205116055659366	0.749315378969369	454.75257518599	0	12.4483037638151						315	24	3	NaN	NaN	NaN	0.00016098	1	14169	118.91	106.08	1	69666			19558	752	16502	16980	19558	19558		
TTHFVEGGDAGNREDQINR	19	Unmodified	_TTHFVEGGDAGNREDQINR_			0	0	1	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.998262	2114.97296	2.9611	0.0020905	-1.1603	-0.00081919	1.8008	0.0012713	706.331315416916	3.9711	0.17727	3.9711	3.8914	4.0686	0	576	181	0.938871150116794	0.12157429143503	0.938871150116794	567.741805359685	0	73.5168054701248						1214	21	4	NaN	NaN	NaN	6.891E-05	1	33539	46.206	40.001	1	340490			19559	752	16503	16981	19559	19559		
TTHLHNDLWEVFSNPEDWK	19	Unmodified	_TTHLHNDLWEVFSNPEDWK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	790.037946	2367.09201	0.58053	0.00045864	-1.0392	-0.00082103	-0.4587	-0.00036239	790.371359242873	16.147	0.097561	16.147	16.103	16.2	0	585	37	0.932794566565362	0.0243080216588687	0.932794566565362	563.675490579671	0	14.6890178445567						297	12	3	NaN	NaN	NaN	3.346E-05	1	36196	26.929	25.986	1	68825			19560	1531	16504	16982	19560	19560		
TTHQDEEVFK	10	Unmodified	_TTHQDEEVFK_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.290942	1232.56733	2.1734	0.0013416	-0.94621	-0.00058409	1.2272	0.00075752	617.290219857306	3.0311	0.14187	3.0311	2.9602	3.102	0	612	22	0.914549654013882	0.0142022930717167	0.914549654013882	370.407524093183	0	5.75216030103104						100	17	2	NaN	NaN	NaN	0.064564	1	10382	22.004	10.046	1	22582			19561	407	16505	16983	19561	19561		
TTHVVNLGSNQYLFSVIVDPK	21	Unmodified	_TTHVVNLGSNQYLFSVIVDPK_			0	0	0	Q96RS6	Q96RS6	Q96RS6	NUDCD1	NudC domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.749625	2330.22705	0.28056	0.00021821	-1.1378	-0.00088493	-0.85725	-0.00066672	778.083319836581	15.97	0.11527	15.97	15.925	16.041	0	546	40	0.959108205975751	0.0262881524128359	0.959108205975751	579.629959180147	0	15.887050715484						377	14	4	NaN	NaN	NaN	2.7259E-07	1	35901	77.347	75.724	1	84116			19562	2614	16506	16984	19562	19562		
TTHYTPLACGSNPLK	15	Unmodified	_TTHYTPLACGSNPLK_			0	0	0	O60832	O60832	O60832	DKC1	H/ACA ribonucleoprotein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.411597	1658.80864	2.9392	0.0024408	-1.844	-0.0015313	1.0952	0.00090948	830.410775784768	6.8974	0.15074	6.8974	6.8087	6.9594	0	378	46	1.07192009927972	0.030094602206975	1.07192009927972	432.907300588688	0	12.1540523519114						375	18	3	NaN	NaN	NaN	0.0002547	1	23287	65.879	56.136	1	86569			19563	287	16507	16985	19563	19563		
TTIEAIHGLMSQVIK	15	Unmodified	_TTIEAIHGLMSQVIK_			0	0	0	Q92905	Q92905	Q92905	COPS5	COP9 signalosome complex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.95564	1639.89673	1.6987	0.0013946	1.4304	0.0011743	3.1291	0.0025689	820.95701071535	15.145	0.12415	15.145	15.101	15.225	0	285	40	1.13399579921816	0.0259780251845936	1.13399579921816	458.021023674286	0	10.4925271295427						438	15	4	NaN	NaN	NaN	4.5581E-12	1	22762	132.9	126.87	1	152630			19564	2443	16508	16986	19564	19564		
TTIENIQLPHTLLSR	15	Unmodified	_TTIENIQLPHTLLSR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.328221	1734.96283	-0.21418	-0.00012408	-1.2293	-0.00071215	-1.4434	-0.00083623	579.327591203692	13.398	0.20402	13.398	13.292	13.496	0	651	82	0.888155670855968	0.05490203035659	0.888155670855968	537.839720005559	0	33.2469786588952						751	24	4	NaN	NaN	NaN	0.0088921	1	25477	38.584	38.351	1	231170			19565	950	16509	16987	19565	19565		
TTIENIQLPHTLLSR	15	Unmodified	_TTIENIQLPHTLLSR_			0	0	0	P33991	P33991	P33991	MCM4	DNA replication licensing factor MCM4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.488693	1734.96283	2.059	0.0017882	-1.6255	-0.0014117	0.43347	0.00037646	868.489180829489	13.407	0.20402	13.407	13.292	13.496	0	252	82	1.15595906938629	0.0539172985517062	1.15595906938629	466.677621281159	0	21.7672037880849						1169	24	5	NaN	NaN	NaN	3.0251E-17	1	25478	156.73	152.99	1	350520			19566	950	16509	16987	19566	19566		
TTIFTDAK	8	Unmodified	_TTIFTDAK_			0	0	0	Q15370	Q15370	Q15370	TCEB2	Transcription elongation factor B polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.739825	895.465098	-0.81138	-0.0003641	-0.84143	-0.00037758	-1.6528	-0.00074168	448.739497337524	5.5405	0.20395	5.5405	5.4697	5.6736	-8.8818E-16	786	31	0.796423123669906	0.0204460030373547	0.796423123669906	323.905644769079	0	8.31539868687906						235	24	3	NaN	NaN	NaN	0.0029902	1	2260	75.243	54.896	1	52226			19567	1836	16510	16988	19567	19567		
TTIIWDAHTGEAK	13	Unmodified	_TTIIWDAHTGEAK_			0	0	0	Q9BZK7;O60907;Q9BQ87	Q9BZK7	Q9BZK7	TBL1XR1;TBL1X;TBL1Y	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.580658	1441.72014	-0.29473	-0.00014194	1.4866	0.00071594	1.1919	0.000574	481.581522244105	7.0481	0.07098	7.0481	7.0126	7.0836	0	738	79	0.829104889055312	0.0529825331575728	0.829104889055312	502.887992394743	0	32.1361990302076						337	9	2	NaN	NaN	NaN	0.068718	1	16720	6.7469	0	1	89917			19568	2814	16511	16989	19568	19568		
TTIIWDAHTGEAK	13	Unmodified	_TTIIWDAHTGEAK_			0	0	0	Q9BZK7;O60907;Q9BQ87	Q9BZK7	Q9BZK7	TBL1XR1;TBL1X;TBL1Y	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X;F-box-like/WD repeat-containing protein TBL1Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.867348	1441.72014	1.9633	0.0014173	0.4128	0.00029799	2.3761	0.0017153	722.369079914596	7.0392	0.18629	7.0392	6.9683	7.1545	0	414	79	1.04781950764076	0.0523117394777037	1.04781950764076	423.701397606959	0	21.1530296642972						607	22	4	NaN	NaN	NaN	0.012607	1	16721	38.1	2.7702	1	161230			19569	2814	16511	16989	19569	19569		
TTIPEEEEEEEEAAGVVVEEELFHQQGTPR	30	Unmodified	_TTIPEEEEEEEEAAGVVVEEELFHQQGTPR_			0	0	0	P20700	P20700	P20700	LMNB1	Lamin-B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1137.86187	3410.56377	0.98232	0.0011177	0.55591	0.00063255	1.5382	0.0017503	1138.5307066906	17.672	0.15072	17.672	17.592	17.743	0	105	127	1.25339330680955	0.0832805226494588	1.25339330680955	756.055606000439	0	50.2353935334501						749	18	4	NaN	NaN	NaN	0.044154	1	38610	17.05	15.595	1	144210			19570	784	16512	16990	19570	19570		
TTIVICCSPSSYNESETK	18	Unmodified	_TTIVICCSPSSYNESETK_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.46664	2074.91872	1.8492	0.0019203	-1.1464	-0.0011905	0.70273	0.00072976	1038.46630979876	8.5559	0.088667	8.5559	8.5116	8.6002	0	234	25	1.16792504164217	0.0159480534930851	1.16792504164217	470.895591618611	0	6.43009424152103						132	11	3	NaN	NaN	NaN	0.0019075	1	32943	42.941	40.97	1	20579			19571	944	16513	16991	19571	19571		
TTLALHHLSSGHLK	14	Unmodified	_TTLALHHLSSGHLK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.619447	1513.83651	0.18113	9.1582E-05	1.6536	0.00083609	1.8347	0.00092767	505.620234655147	4.4233	0.070922	4.4233	4.3968	4.4677	0	747	34	0.822982596624503	0.0224484086173647	0.822982596624503	498.948797884044	0	13.609773207822						132	9	3	NaN	NaN	NaN	0.022508	1	18943	28.228	19.422	1	43480			19572	2268	16514	16992	19572	19572		
TTLLHMLK	8	Unmodified	_TTLLHMLK_			0	0	0	Q9NR31;Q9Y6B6	Q9NR31;Q9Y6B6	Q9NR31	SAR1A;SAR1B	GTP-binding protein SAR1a;GTP-binding protein SAR1b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.783513	955.552473	0.59031	0.00028263	-0.90521	-0.0004334	-0.31489	-0.00015077	478.783165890356	8.2632	0.17744	8.2632	8.21	8.3874	0	681	55	0.867820189810857	0.036644552172756	0.867820189810857	352.607522277757	0	14.8891958245748						556	21	4	NaN	NaN	NaN	0.0088558	1	3346	70.67	48.283	1	255250			19573	3012;3457	16515	16993	19573	19573		
TTLLPGLLK	9	Unmodified	_TTLLPGLLK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.312961	954.611368	-0.98954	-0.00047331	-1.7744	-0.00084871	-2.7639	-0.001322	478.312044280254	13.637	0.097545	13.637	13.593	13.691	0	726	34	0.837263974740672	0.0224359291106897	0.837263974740672	340.196863681386	0	9.11616043147995						207	12	3	NaN	NaN	NaN	0.0074365	1	3331	56.014	52.199	1	57649			19574	3036	16516	16994	19574	19574		
TTLPTFQSPEFSVTR	15	Unmodified	_TTLPTFQSPEFSVTR_			0	0	0	Q9Y5X3	Q9Y5X3	Q9Y5X3	SNX5	Sorting nexin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.938502	1709.86245	2.2587	0.0019333	-1.0455	-0.00089487	1.2132	0.0010384	855.937538339543	13.708	0.1862	13.708	13.673	13.859	0	366	109	1.07994477139643	0.0721823507256838	1.07994477139643	436.040261443755	0	29.1444636019247						418	22	2	NaN	NaN	NaN	0.0043598	1	24754	66.953	48.446	1	136940			19575	3445	16517	16995	19575	19575		
TTLTAAITK	9	Unmodified	_TTLTAAITK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.276575	918.538597	-0.3148	-0.0001449	-1.9886	-0.00091529	-2.3034	-0.0010602	460.275489790371	6.0815	0.14185	6.0815	6.055	6.1968	0	759	28	0.814815566123307	0.0183822106275564	0.814815566123307	331.260133581304	0	7.47321700906542						257	17	3	NaN	NaN	NaN	0.031685	1	2679	46.447	35.619	1	148890			19576	1131	16518	16996	19576	19576		
TTLVIMER	8	Unmodified	_TTLVIMER_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.770603	961.526652	0.10611	5.1123E-05	-0.080523	-3.8794E-05	0.025591	1.2329E-05	481.770797148737	8.547	0.14187	8.547	8.4672	8.6091	0	702	37	0.853568545818287	0.0244432719031649	0.853568545818287	346.786313999455	0	9.93076913027392						334	17	4	NaN	NaN	NaN	0.0019918	1	3475	51.864	34.468	1	122050			19577	1780	16519	16997	19577	19577		
TTPDVIFVFGFR	12	Unmodified	_TTPDVIFVFGFR_			0	0	0	P62847	P62847	P62847	RPS24	40S ribosomal protein S24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.874445	1397.73434	0.65328	0.00045721	0.46734	0.00032708	1.1206	0.00078429	699.874785823547	18.789	0.15959	18.789	18.745	18.905	0	498	145	0.991429299781895	0.0967225333048396	0.991429299781895	401.019055112475	0	39.1228894713165						1219	19	4	NaN	NaN	NaN	0.0053781	1	15381	63.397	58.87	1	458400			19578	1403	16520	16998	19578	19578		
TTPNSGDVQVTEDAVR	16	Unmodified	_TTPNSGDVQVTEDAVR_			0	0	0	P35269	P35269	P35269	GTF2F1	General transcription factor IIF subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.90793	1687.80131	2.2573	0.0019072	-1.9431	-0.0016417	0.31424	0.0002655	844.906860516871	6.5338	0.21282	6.5338	6.4629	6.6757	0	381	52	1.06991323971056	0.0341307405307956	1.06991323971056	432.035316805025	0	13.7821318128574						626	25	3	NaN	NaN	NaN	0.0040457	1	24133	23.432	20.329	1	141690			19579	968	16521	16999	19579	19579		
TTPSVVAFTADGER	14	Unmodified	_TTPSVVAFTADGER_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.862263	1449.70997	1.8354	0.0013322	1.2272	0.00089081	3.0626	0.0022231	725.863457662129	9.5406	0.24828	9.5406	9.4696	9.7179	0	486	145	0.999498404980629	0.0966157168688393	0.999498404980629	404.140868087046	0	39.0659549746672						1888	29	5	NaN	NaN	NaN	4.3928E-09	1	16975	165.39	144.3	1	1732700			19580	1007	16522	17000	19580	19580		
TTPSYVAFTDTER	13	Unmodified	_TTPSYVAFTDTER_			0	0	0	P0DMV8;P0DMV9;P17066;P48741;P11142;P54652	P0DMV8;P17066;P11142	P0DMV8	HSPA1A;HSPA1B;HSPA6;HSPA7;HSPA8;HSPA2	Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7;Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.354271	1486.69399	2.1665	0.0016127	2.0563	0.0015306	4.2228	0.0031433	744.356022942968	9.2125	0.54091	9.2125	9.1238	9.6647	0	444	208	1.02770517576159	0.139048654475389	1.02770517576159	415.448365157693	0	56.2102220963985						5012	62	5	NaN	NaN	NaN	1.2281E-16	1	18127	188.6	172.72	1	8006800			19581	618;640;734	16523	17001	19581	19581		
TTPYQIACGISQGLADNTVIAK	22	Unmodified	_TTPYQIACGISQGLADNTVIAK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.398375	2320.1733	1.2166	0.00094216	-0.80223	-0.00062124	0.41441	0.00032092	774.732268345349	17.583	0.31919	17.583	17.371	17.69	0	429	43	1.03776581230406	0.0281600678501546	1.03776581230406	627.182200719902	0	17.0187658114015						826	37	5	NaN	NaN	NaN	0.00040337	1	35824	82.725	81.299	1	252360			19582	857	16524	17002	19582	19582		
TTPYQIACGISQGLADNTVIAK	22	Unmodified	_TTPYQIACGISQGLADNTVIAK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.09392	2320.1733	0.78541	0.00091194	-0.32172	-0.00037354	0.4637	0.00053839	1161.59528176248	17.566	0.31033	17.566	17.371	17.681	0	93	85	1.26131825079847	0.0554670589212796	1.26131825079847	508.193267277363	0	22.3480361769337						2300	36	5	NaN	NaN	NaN	1.5801E-06	1	35825	100.6	97.349	1	645050			19583	857	16524	17002	19583	19583		
TTQGLTALLLSLK	13	Unmodified	_TTQGLTALLLSLK_			0	0	0	Q9NRW7	Q9NRW7	Q9NRW7	VPS45	Vacuolar protein sorting-associated protein 45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.91631	1357.81807	0.7946	0.00054026	-0.23641	-0.00016074	0.55819	0.00037952	679.916012393252	18.532	0.070923	18.532	18.506	18.577	0	426	34	1.03977710643793	0.0221242386339204	1.03977710643793	420.696153180999	0	8.95151665459787						175	9	3	NaN	NaN	NaN	0.0002638	1	14138	55.578	41.584	1	40171			19584	3027	16525	17003	19584	19584		
TTQIPQFLLDDCFK	14	Unmodified	_TTQIPQFLLDDCFK_			0	0	0	Q9H6S0	Q9H6S0	Q9H6S0	YTHDC2	Probable ATP-dependent RNA helicase YTHDC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.429455	1724.84436	1.6053	0.0013861	8.0399	0.0069419	9.6452	0.0083279	863.935152310085	16.519	0.19507	16.519	16.44	16.635	0	288	52	1.13199748998575	0.0339479110580481	1.13199748998575	457.025195332005	0	13.705905551622						302	23	3	NaN	NaN	NaN	0.050471	1	25191	31.801	23.426	1	74936			19585	2907	16526	17004	19585	19585		
TTQIPQWCVEYMR	13	Unmodified	_TTQIPQWCVEYMR_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.400175	1710.7858	2.2921	0.0019629	-0.92753	-0.00079434	1.3646	0.0011686	856.399572383604	13.079	0.17734	13.079	13.008	13.185	0	336	55	1.09998710857178	0.0360662768322055	1.09998710857178	444.130660291364	0	14.5621155183687						881	21	4	NaN	NaN	NaN	0.0044609	1	24777	54.27	49.742	1	260150			19586	181	16527	17005	19586	19586		
TTQQIDLQGPGPWGFR	16	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TTQQIDLQGPGPWGFR_			1	0	0	O00151	O00151	O00151	PDLIM1	PDZ and LIM domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.9603	1841.90605	1.1516	0.0010617	1.9498	0.0017976	3.1013	0.0028593	922.463629825304	17.149	0.15073	17.149	17.069	17.22	0	207	52	1.18585551256002	0.0338640233307155	1.18585551256002	478.526840948039	0	13.6651083834446						437	18	4	NaN	NaN	NaN	5.2462E-06	1	28283	121.96	108.79	1	97781			19587	52	16528	17006	19587	19587		
TTQVPQFILDDFIQNDR	17	Unmodified	_TTQVPQFILDDFIQNDR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.51564	2049.01672	1.5776	0.0016179	0.48122	0.00049349	2.0588	0.0021113	1026.01724854564	18.63	0.37242	18.63	18.497	18.869	0	192	73	1.1958073123591	0.0477326152978108	1.1958073123591	482.177950883252	0	19.2469258188358						1310	43	6	NaN	NaN	NaN	1.9837E-06	1	32532	108.34	92.809	1	672060			19588	1575	16529	17007	19588	19588		
TTSIATTTTTTTESVEEVVR	20	Unmodified	_TTSIATTTTTTTESVEEVVR_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.0368	2126.05904	0.52466	0.00055826	-0.26393	-0.00028083	0.26073	0.00027743	1064.53781871188	12.148	0.070964	12.148	12.112	12.183	0	138	31	1.23157729878518	0.019847693635112	1.23157729878518	496.480126035667	0	8.00110999707255						154	9	3	NaN	NaN	NaN	2.1137E-05	1	33695	89.359	88.265	1	27461			19589	523	16530	17008	19589	19589		
TTSNTLHYIHIEQLDK	16	Unmodified	_TTSNTLHYIHIEQLDK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.33029	1911.96904	0.90209	0.00057583	-0.062209	-3.971E-05	0.83989	0.00053612	638.664752597458	8.9021	0.071077	8.9021	8.8753	8.9464	0	600	25	0.922661313351899	0.0162165760860672	0.922661313351899	558.325506148625	0	9.81305699093286						169	9	4	NaN	NaN	NaN	0.0020732	1	29876	66.485	65.306	1	41456			19590	2149	16531	17009	19590	19590		
TTSQLCWPLLK	11	Unmodified	_TTSQLCWPLLK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.86048	1345.70641	0.61229	0.0004126	-2.1091	-0.0014212	-1.4968	-0.0010087	673.85974908356	14.657	0.31034	14.657	14.489	14.799	0	507	37	0.985374541851584	0.0242274096445863	0.985374541851584	398.720919251849	0	9.80335358210982						341	36	3	NaN	NaN	NaN	0.00031741	1	13784	88.181	72.301	1	121520			19591	2947	16532	17010	19591	19591		
TTSSANNPNLMYQDECDR	18	Unmodified	_TTSSANNPNLMYQDECDR_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1058.43894	2114.86333	2.3866	0.0025261	-1.6145	-0.0017089	0.77212	0.00081724	1058.93855015164	6.4363	0.088683	6.4363	6.3919	6.4806	0	216	37	1.17988115188462	0.0239023706584269	1.17988115188462	475.656440537437	0	9.63598454779412						257	11	3	NaN	NaN	NaN	2.3569E-10	1	33532	125.75	118.11	1	47910			19592	2435	16533	17011	19592	19592		
TTTGDVQVLGLVHTQK	16	Unmodified	_TTTGDVQVLGLVHTQK_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.965051	1695.91555	2.1766	0.0018478	0.30586	0.00025966	2.4824	0.0021075	848.965152428131	9.7268	0.079814	9.7268	9.6913	9.7711	0	204	31	1.18784641916898	0.0199077014377831	1.18784641916898	479.638514827318	0	8.03849739928836						231	10	4	NaN	NaN	NaN	1.997E-17	1	24388	128.41	94.22	1	61007			19593	657	16534	17012	19593	19593		
TTTHVPPELGQIMDSETFEK	20	Unmodified	_TTTHVPPELGQIMDSETFEK_			0	0	0	O75844	O75844	O75844	ZMPSTE24	CAAX prenyl protease 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.031581	2259.07291	1.0648	0.00080287	-1.6641	-0.0012548	-0.59931	-0.00045189	754.364830775737	13.522	0.23054	13.522	13.469	13.7	0	606	40	0.918606045818476	0.0263610708448411	0.918606045818476	555.256354312962	0	15.9340907451251						668	27	5	NaN	NaN	NaN	4.378E-11	1	35263	148.62	144.55	1	159740			19594	366	16535	17013	19594	19594		
TTTPGPSLSQGVSVDEK	17	Unmodified	_TTTPGPSLSQGVSVDEK_			0	0	0	O60934	O60934	O60934	NBN	Nibrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.928331	1701.84211	2.8787	0.0024525	-2.3848	-0.0020316	0.49396	0.00042082	851.926339939454	7.6422	0.15967	7.6422	7.5713	7.7309	0	339	31	1.09798411722691	0.0200340549752125	1.09798411722691	443.340661066812	0	8.08928930501457						209	19	3	NaN	NaN	NaN	7.4082E-05	1	24554	53.051	41.033	1	42301			19595	295	16536	17014	19595	19595		
TTTTNTQVEGDDEAAFLER	19	Unmodified	_TTTTNTQVEGDDEAAFLER_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.48219	2096.94982	3.6051	0.0037834	-2.2753	-0.0023879	1.3297	0.0013955	1049.98151501435	9.8332	0.12412	9.8332	9.7889	9.913	0	201	64	1.18983705239708	0.0418090604716055	1.18983705239708	479.696789573982	0	16.8558140317861						653	15	4	NaN	NaN	NaN	1.6034E-10	1	33267	112.68	91.015	1	183110			19596	1554	16537	17015	19596	19596		
TTTTNTQVEGDDEAAFLER	19	Unmodified	_TTTTNTQVEGDDEAAFLER_			0	0	0	Q05682	Q05682	Q05682	CALD1	Caldesmon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.99055	2096.94982	1.7563	0.0012294	0.065233	4.5663E-05	1.8215	0.0012751	700.324946743552	9.8243	0.088719	9.8243	9.7889	9.8776	0	543	25	0.961130371139249	0.0161762030929075	0.961130371139249	581.234660290773	0	9.78240849714916						202	11	4	NaN	NaN	NaN	3.0371E-05	1	33268	128.68	107.71	1	52011			19597	1554	16537	17015	19597	19597		
TTTVNIGSISTADGSALVK	19	Unmodified	_TTTVNIGSISTADGSALVK_			0	0	0	Q96B26	Q96B26	Q96B26	EXOSC8	Exosome complex component RRP43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.991463	1833.96837	1.9053	0.001749	-0.22164	-0.00020347	1.6837	0.0015456	918.492675814027	12.281	0.097554	12.281	12.245	12.343	0	255	43	1.15396378101328	0.027932123570007	1.15396378101328	465.672680281807	0	11.2717808503369						329	12	4	NaN	NaN	NaN	3.6802E-05	1	28087	105.78	86.223	1	98748			19598	2479	16538	17016	19598	19598		
TTVIENGEIR	10	Unmodified	_TTVIENGEIR_			0	0	0	P56179	P56179	P56179	DLX6	Homeobox protein DLX-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.303852	1130.59315	1.8095	0.0010247	-2.7654	-0.0015661	-0.95594	-0.00054135	566.302337069007	9.576	0.84234	9.576	9.3632	10.206	0	582	97	0.934820374997243	0.0648753685956291	0.934820374997243	378.995483157877	0	26.3018140421024						1242	96	3	NaN	NaN	NaN	0.070087	1	7544	24.121	0.546	1	1297500			19599	1282	16539	17017	19599	19599		
TTVLAMDQVPR	11	Unmodified	_TTVLAMDQVPR_			0	0	0	Q13423	Q13423	Q13423	NNT	NAD(P) transhydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.82918	1229.64381	0.76903	0.00047359	0.46209	0.00028457	1.2311	0.00075816	615.829519693221	9.381	0.1774	9.381	9.2656	9.443	0	519	43	0.97729762293174	0.028284867590345	0.97729762293174	395.83189132675	0	11.4561341105349						372	21	3	NaN	NaN	NaN	0.00028352	1	10299	78.816	66.749	1	78526			19600	1664	16540	17018	19600	19600		
TTVLLADINDFNTVNEIYK	19	Unmodified	_TTVLLADINDFNTVNEIYK_			0	0	0	P52758	P52758	P52758	HRSP12	Ribonuclease UK114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1092.06516	2182.11576	0.35359	0.00038615	-0.2923	-0.00031921	0.061295	6.6938E-05	1092.56628052962	17.885	0.09751	17.885	17.858	17.956	0	111	76	1.24942920585258	0.049575070497053	1.24942920585258	503.592697806423	0	19.9816391185756						465	12	3	NaN	NaN	NaN	1.3701E-14	1	34481	109.47	97.298	1	122290			19601	1221	16541	17019	19601	19601		
TTVVYPATEK	10	Unmodified	_TTVVYPATEK_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.797872	1107.58119	1.2463	0.00069146	-0.084448	-4.6851E-05	1.1619	0.00064461	554.797472293794	4.6273	0.20396	4.6273	4.5741	4.778	0	645	40	0.892219381832517	0.026401305375596	0.892219381832517	361.814671840769	0	10.7063126347016						333	24	3	NaN	NaN	NaN	3.7813E-05	1	6928	69.915	34.983	1	104930			19602	2491	16542	17020	19602	19602		
TTWGDGGENSPCNVVSK	17	Unmodified	_TTWGDGGENSPCNVVSK_			0	0	0	O00161	O00161	O00161	SNAP23	Synaptosomal-associated protein 23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.399415	1806.78428	2.108	0.0019065	-1.1291	-0.0010211	0.97895	0.00088536	904.39846606344	7.1102	0.10633	7.1102	7.066	7.1723	0	357	34	1.08596037261705	0.0220511287712513	1.08596037261705	438.27994928358	0	8.89955825572088						258	13	4	NaN	NaN	NaN	0.00078373	1	27388	65.12	52.269	1	59649			19603	55	16543	17021	19603	19603		
TTYDQMYNDLLR	12	Unmodified	_TTYDQMYNDLLR_			0	0	0	Q9NP77	Q9NP77	Q9NP77	SSU72	RNA polymerase II subunit A C-terminal domain phosphatase SSU72	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.856123	1531.69769	1.4229	0.0010911	1.9058	0.0014615	3.3287	0.0025526	766.857050389235	13.664	0.133	13.664	13.593	13.726	0	435	61	1.03374239103424	0.0402120243950188	1.03374239103424	417.775647593357	0	16.251248549323						337	16	3	NaN	NaN	NaN	0.00041453	1	19476	65.879	59.851	1	96281			19604	2978	16544	17022	19604	19604		
TTYDSSLSSYTVPLEK	16	Unmodified	_TTYDSSLSSYTVPLEK_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.938364	1789.86218	1.2982	0.0011631	0.62115	0.00055651	1.9194	0.0017196	895.939468856512	11.944	0.28377	11.944	11.802	12.086	0	297	49	1.12600091227925	0.0319883593147245	1.12600091227925	454.472526324455	0	12.9110290339906						700	33	5	NaN	NaN	NaN	4.4563E-12	1	26961	128.41	114.61	1	246810			19605	2391	16545	17023	19605	19605		
TTYLEDLPPPPEYELAPSK	19	Unmodified	_TTYLEDLPPPPEYELAPSK_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1080.54099	2159.06742	1.2839	0.0013873	-1.6785	-0.0018137	-0.39466	-0.00042645	1081.04036236432	14.675	0.19512	14.675	14.595	14.79	1.7764E-15	135	82	1.23356193185193	0.0535924865857382	1.23356193185193	497.230841344067	0	21.6023504833204						1272	23	6	NaN	NaN	NaN	0.00072317	1	34160	57.042	55.772	1	374430			19606	1600	16546	17024	19606	19606		
TTYLEFIQQNEER	13	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))TTYLEFIQQNEER_			1	0	0	Q15436	Q15436	Q15436	SEC23A	Protein transport protein Sec23A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.909941	1711.80533	1.4714	0.0012609	0.47941	0.00041081	1.9509	0.0016717	856.909996437206	17.876	0.11524	17.876	17.832	17.947	0	240	40	1.16393748060522	0.0259244956409976	1.16393748060522	469.948999921072	0	10.4672209658632						408	14	4	NaN	NaN	NaN	1.1816E-07	1	24811	117.99	103.53	1	133790			19607	1850	16547	17025	19607	19607		
TTYLVLDEADR	11	Unmodified	_TTYLVLDEADR_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.327524	1294.6405	1.8577	0.0012044	-0.40122	-0.00026012	1.4565	0.00094427	648.327454410813	10.374	0.23944	10.374	10.294	10.534	0	534	46	0.967195187796614	0.0303157001501234	0.967195187796614	391.521730448737	0	12.271830476722						597	28	5	NaN	NaN	NaN	0.0018559	1	12205	83.438	73.923	1	328650			19608	743	16548	17026	19608	19608		
TVAEVQETLAEMIR	14	Unmodified	_TVAEVQETLAEMIR_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.413805	1588.81306	0.74264	0.0005907	0.19806	0.00015754	0.94069	0.00074824	795.41490509999	17.096	0.25715	17.096	17.025	17.282	0	381	55	1.06991323971056	0.0361209959185984	1.06991323971056	432.254451142025	0	14.593203155165						638	30	4	NaN	NaN	NaN	1.9672E-11	1	21252	114.93	82.386	1	174790			19609	2355	16549	17027	19609	19609		
TVAGGAWTYNTTSAVTVK	18	Unmodified	_TVAGGAWTYNTTSAVTVK_			0	0	0	P61513	P61513	P61513	RPL37A	60S ribosomal protein L37a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.96779	1825.92103	2.2547	0.0020607	-0.4603	-0.0004207	1.7944	0.00164	914.468976148084	10.303	0.22163	10.303	10.259	10.48	0	285	43	1.13399579921816	0.0279744112588804	1.13399579921816	457.629903010429	0	11.2892191664217						655	26	4	NaN	NaN	NaN	1.9961E-10	1	27880	118.26	101.27	1	176780			19610	1346	16550	17028	19610	19610		
TVAGQDAVIVLLGTR	15	Unmodified	_TVAGQDAVIVLLGTR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.940847	1511.86714	0.67441	0.00051049	0.83365	0.00063102	1.5081	0.0011415	756.941349232359	15.712	0.14187	15.712	15.659	15.801	0	420	37	1.04379886199097	0.0241205492413457	1.04379886199097	421.889420008347	0	9.74920063651319						177	17	3	NaN	NaN	NaN	3.4108E-06	1	18871	96.313	81.165	1	36040			19611	894	16551	17029	19611	19611		
TVAGQDAVIVLLGTR	15	Unmodified	_TVAGQDAVIVLLGTR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.940847	1511.86714	1.5986	0.0012101	0.78933	0.00059748	2.388	0.0018075	756.941548455895	15.704	0.23942	15.704	15.65	15.89	1.7764E-15	303	106	1.12200181823275	0.0700372514484737	1.12200181823275	453.498000208783	0	28.3081123005933						1230	28	4	NaN	NaN	NaN	1.2045E-11	1	18872	156.02	130.17	1	722260			19612	894	16551	17029	19612	19612		
TVAIYSEQDTGQMHR	15	Unmodified	_TVAIYSEQDTGQMHR_			0	0	0	P11498	P11498	P11498	PC	Pyruvate carboxylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.407043	1734.79953	2.9256	0.0025406	-1.9165	-0.0016643	1.0091	0.00087631	868.906819827689	5.6203	0.053329	5.6203	5.5937	5.6471	0	300	25	1.12400150285141	0.015996377322206	1.12400150285141	453.77622284611	0	6.45797684618526						81	7	3	NaN	NaN	NaN	0.00015093	1	25459	55.604	50.775	1	13433			19613	655	16552	17030	19613	19613		
TVALDGTLFQK	11	Unmodified	_TVALDGTLFQK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.832246	1191.64994	0.21752	0.00012982	-2.3517	-0.0014036	-2.1342	-0.0012737	596.831612754954	11.722	0.11527	11.722	11.687	11.802	0	573	40	0.940896116921038	0.0263209282177764	0.940896116921038	381.223164349599	0	10.6644584490739						211	14	3	NaN	NaN	NaN	0.040001	1	9212	28.647	22.781	1	76646			19614	1764	16553	17031	19614	19614		
TVALWDLR	8	Unmodified	_TVALWDLR_			0	0	0	Q09028;Q16576	Q09028;Q16576	Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.276909	972.539266	-0.29002	-0.00014132	-0.37378	-0.00018213	-0.6638	-0.00032346	487.277047586967	13.238	0.24834	13.238	13.141	13.389	0	717	46	0.84338031290707	0.030573200685858	0.84338031290707	342.592358450256	0	12.4192428588207						733	29	4	NaN	NaN	NaN	0.0010189	1	3691	87.251	42.484	1	592030			19615	1582;1890	16554	17032	19615	19615		
TVAPMPPAQDHK	12	Unmodified	_TVAPMPPAQDHK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.326805	1290.63906	2.2524	0.0014558	-3.8399	-0.0024818	-1.5875	-0.001026	646.323482880364	3.3681	0.17743	3.3681	3.3326	3.51	0	573	52	0.940896116921038	0.0344053845172715	0.940896116921038	380.888316385768	0	13.9277957977674						325	21	3	NaN	NaN	NaN	0.035103	1	12090	34.953	20.958	1	70124			19616	801	16555	17033	19616	19616		
TVASPGVTVEEAVEQIDIGGVTLLR	25	Unmodified	_TVASPGVTVEEAVEQIDIGGVTLLR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.797192	2552.36975	1.3336	0.001136	-0.24035	-0.00020473	1.0932	0.00093122	852.131311549789	20.04	0.035463	20.04	20.022	20.057	0	342	46	1.09598084995137	0.0300655815217838	1.09598084995137	662.006290260459	0	18.160540020971						157	5	5	NaN	NaN	NaN	2.903E-13	1	37040	124.69	120.31	1	45452			19617	929	16556	17034	19617	19617		
TVAVITSDGR	10	Unmodified	_TVAVITSDGR_			0	0	0	O95777	O95777	O95777	LSM8	U6 snRNA-associated Sm-like protein LSm8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.780013	1017.54547	0.84637	0.00043146	1.5991	0.0008152	2.4455	0.0012467	509.780972382988	4.778	0.15961	4.778	4.7425	4.9021	0	687	31	0.863749705078866	0.0203496003822382	0.863749705078866	350.650218316058	0	8.26118003250122						182	19	3	NaN	NaN	NaN	0.0019529	1	4683	61.48	28.084	1	73989			19618	451	16557	17035	19618	19618		
TVCDWETGHEPFNDPALR	18	Unmodified	_TVCDWETGHEPFNDPALR_			0	0	0	Q7L576	Q7L576	Q7L576	CYFIP1	Cytoplasmic FMR1-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.321577	2142.9429	0.48917	0.00034991	0.13614	9.7381E-05	0.62531	0.0004473	715.656043647621	11.137	0.088678	11.137	11.101	11.19	0	651	31	0.888155670855968	0.0203241961529822	0.888155670855968	537.028113169481	0	12.2891347427906						261	11	4	NaN	NaN	NaN	7.5467E-06	1	33919	65.12	62.879	1	56659			19619	2117	16558	17036	19619	19619		
TVDFTQDSNYLLTGGQDK	18	Unmodified	_TVDFTQDSNYLLTGGQDK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.47363	2000.93271	1.8361	0.0018388	0.44306	0.00044372	2.2791	0.0022825	1001.97560209386	13.416	0.28377	13.416	13.363	13.646	0	219	67	1.17788915118882	0.0438270504083127	1.17788915118882	475.029732342238	0	17.6749671255552						1245	33	5	NaN	NaN	NaN	7.681E-26	1	31649	191.98	175.22	1	356890			19620	3394	16559	17037	19620	19620		
TVDGMQQEGTPYTGILYAGIMLTK	24	Unmodified	_TVDGMQQEGTPYTGILYAGIMLTK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.097597	2586.27096	1.2141	0.0010479	0.92882	0.00080166	2.1429	0.0018495	863.433332870786	19.259	0.070949	19.259	19.233	19.304	0	336	28	1.09998710857178	0.0180244409504104	1.09998710857178	664.379022915473	0	10.8865461912366						169	9	5	NaN	NaN	NaN	0.00016447	1	37184	68.789	68.19	1	32161			19621	801	16560	17038	19621	19621		
TVDLGLTGNHGVVHPSLADSANK	23	Unmodified	_TVDLGLTGNHGVVHPSLADSANK_			0	0	0	Q9H845	Q9H845	Q9H845	ACAD9	Acyl-CoA dehydrogenase family member 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.064384	2301.17132	1.6442	0.0012629	1.4193	0.0010901	3.0635	0.0023529	768.399257627227	9.2479	0.10646	9.2479	9.2125	9.3189	0	399	25	1.0578662689527	0.0160692759282262	1.0578662689527	639.361474416263	0	9.71207443871333						181	13	4	NaN	NaN	NaN	1.8154E-06	1	35655	96.78	94.539	1	44743			19622	2922	16561	17039	19622	19622		
TVDLKPDWGK	10	Unmodified	_TVDLKPDWGK_			0	0	1	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.811313	1157.60807	1.6015	0.00092857	0.23244	0.00013477	1.8339	0.0010633	579.811496924401	7.3053	0.32806	7.3053	7.1457	7.4738	0	573	61	0.940896116921038	0.0405021601572745	0.940896116921038	381.351439827124	0	16.4157942777243						966	38	4	NaN	NaN	NaN	0.00093888	1	8289	129.28	99.971	1	502230			19623	934	16562	17040	19623	19623		
TVDLSSHLAK	10	Unmodified	_TVDLSSHLAK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.795663	1069.57677	2.2213	0.0011902	-0.61296	-0.00032842	1.6083	0.00086174	535.795384855183	4.9819	0.20392	4.9819	4.9376	5.1415	0	606	73	0.918606045818476	0.0487172425859949	0.918606045818476	372.677678093973	0	19.7645431714012						521	24	4	NaN	NaN	NaN	0.0068966	1	5947	58.916	34.794	1	201470			19624	518	16563	17041	19624	19624		
TVDNFVALATGEK	13	Unmodified	_TVDNFVALATGEK_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.856449	1363.69835	2.4585	0.0016788	-0.71718	-0.00048973	1.7413	0.001189	682.856348953902	12.866	0.38132	12.866	12.733	13.114	0	504	115	0.987393073566096	0.0766036741943529	0.987393073566096	399.484097278669	0	30.992671969267						2452	44	5	NaN	NaN	NaN	1.1798E-16	1	14302	212.27	154.38	1	1837900			19625	816	16564	17042	19625	19625		
TVDSQGPTPVCTPTFLER	18	Unmodified	_TVDSQGPTPVCTPTFLER_			0	0	0	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.9884	2003.96224	1.2293	0.001233	0.33464	0.00033564	1.564	0.0015686	1003.49023532695	12.024	0.16848	12.024	11.926	12.094	0	243	76	1.16194328902838	0.0498342760259569	1.16194328902838	468.594061213509	0	20.0974057952219						886	20	5	NaN	NaN	NaN	2.4497E-10	1	31700	115.24	109.54	1	231340			19626	2801	16565	17043	19626	19626		
TVEAEAAHGTVTR	13	Unmodified	_TVEAEAAHGTVTR_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.341498	1340.66844	2.2218	0.0014916	-1.3243	-0.00088907	0.89747	0.00060251	671.340552591681	2.8715	0.16847	2.8715	2.8538	3.0222	0	486	37	0.999498404980629	0.0242039733351906	0.999498404980629	404.451431032198	0	9.79424439629071						335	20	4	NaN	NaN	NaN	7.3322E-08	1	13615	165.39	134.8	1	88800			19627	367	16566	17044	19627	19627		
TVEAEAAHGTVTR	13	Unmodified	_TVEAEAAHGTVTR_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.896757	1340.66844	-0.52898	-0.00023693	1.5151	0.00067861	0.98613	0.00044168	447.8975077207	2.8804	0.13302	2.8804	2.8449	2.9779	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	485.892519319301	0	12.4085253875268						177	16	3	NaN	NaN	NaN	0.025373	1	13616	22.142	19.471	1	45146			19628	367	16566	17044	19628	19628		
TVECEEGSEDDESLR	15	Unmodified	_TVECEEGSEDDESLR_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.854703	1753.69485	3.297	0.0028943	-2.4444	-0.0021458	0.85261	0.00074847	877.852740379801	4.4233	0.09751	4.4233	4.3968	4.4943	0	405	28	1.05384839605172	0.018084171566231	1.05384839605172	425.418023945032	0	7.30022701672476						159	12	3	NaN	NaN	NaN	3.5784E-06	1	25990	106.47	104.48	1	35751			19629	3261	16567	17045	19629	19629		
TVEDLDGLIQQIYR	14	Unmodified	_TVEDLDGLIQQIYR_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.938502	1661.86245	1.2016	0.00099965	-1.361	-0.0011322	-0.15937	-0.00013259	831.937682580144	18.204	0.13301	18.204	18.151	18.284	0	378	70	1.07192009927972	0.0461705299793509	1.07192009927972	432.900709122562	0	18.646217364574						322	16	2	NaN	NaN	NaN	2.3297E-11	1	23398	115.41	100.96	1	124020			19630	3283	16568	17046	19630	19630		
TVEELLETGLIQVATK	16	Unmodified	_TVEELLETGLIQVATK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.490567	1742.96658	1.1463	0.0010001	-2.4883	-0.002171	-1.342	-0.0011709	872.488426756256	18.86	0.1064	18.86	18.825	18.931	0	297	31	1.12600091227925	0.0199927208800443	1.12600091227925	454.566530256504	0	8.07106074402066						205	13	3	NaN	NaN	NaN	0.0001824	1	25693	87.573	69.842	1	66394			19631	2167	16569	17047	19631	19631		
TVEELLETGLIQVATK	16	Unmodified	_TVEELLETGLIQVATK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	581.996137	1742.96658	-1.2226	-0.00071154	0.61941	0.00036049	-0.60317	-0.00035104	581.996353991191	18.851	0.06204	18.851	18.825	18.887	0	627	22	0.90440375274676	0.0142101719766599	0.90440375274676	547.659137186588	0	8.60492949125307						104	8	3	NaN	NaN	NaN	0.066317	1	25694	23.931	17.076	1	21478			19632	2167	16569	17047	19632	19632		
TVEEVTVER	9	Unmodified	_TVEEVTVER_			0	0	0	Q07157	Q07157	Q07157	TJP1	Tight junction protein ZO-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.277303	1060.54005	0.96676	0.00051362	-0.29749	-0.00015805	0.66927	0.00035557	531.277668073103	4.4943	0.11526	4.4943	4.4588	4.5741	0	717	52	0.84338031290707	0.0346303797525405	0.84338031290707	342.195726863838	0	14.0510369872685						228	14	2	NaN	NaN	NaN	0.046517	1	5741	28.096	19.914	1	50315			19633	1568	16570	17048	19633	19633		
TVEFLQEYIVNR	12	Unmodified	_TVEFLQEYIVNR_			0	0	0	O43823	O43823	O43823	AKAP8	A-kinase anchor protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.898648	1509.78274	0.87624	0.00066235	1.5703	0.001187	2.4465	0.0018493	755.899928939868	14.719	0.12417	14.719	14.684	14.808	0	405	43	1.05384839605172	0.028132878019673	1.05384839605172	425.956638145923	0	11.3710721461697						324	15	3	NaN	NaN	NaN	3.4362E-07	1	18803	97.277	62.325	1	76969			19634	237	16571	17049	19634	19634		
TVEFQHIIPISAVTGEGIEELK	22	Unmodified	_TVEFQHIIPISAVTGEGIEELK_			0	0	0	A4D1E9	A4D1E9	A4D1E9	GTPBP10	GTP-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	804.100324	2409.27914	0.30686	0.00024674	1.4116	0.0011351	1.7185	0.0013818	804.43568384079	16.768	0.097545	16.768	16.714	16.812	0	375	34	1.07392668217569	0.0220724150021865	1.07392668217569	648.893472378828	0	13.3367074794519						204	12	4	NaN	NaN	NaN	0.015622	1	36399	27.94	22.859	1	43591			19635	9	16572	17050	19635	19635		
TVEGVLIVHEHR	12	Unmodified	_TVEGVLIVHEHR_			0	0	0	O43809	O43809	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.593009	1387.7572	-0.85439	-0.00039609	-0.76707	-0.00035561	-1.6215	-0.0007517	463.592557289114	5.5405	0.13298	5.5405	5.5051	5.6381	0	816	25	0.775960037304758	0.0163818703508136	0.775960037304758	470.826995928897	0	9.93997942440552						206	16	3	NaN	NaN	NaN	0.0038647	1	15083	41.824	34.684	1	68724			19636	232	16573	17051	19636	19636		
TVEGVLIVHEHR	12	Unmodified	_TVEGVLIVHEHR_			0	0	0	O43809	O43809	O43809	NUDT21	Cleavage and polyadenylation specificity factor subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.885875	1387.7572	2.0607	0.0014319	-1.2429	-0.00086369	0.81776	0.00056825	694.885547118234	5.5405	0.10641	5.5405	5.5139	5.6203	0	432	25	1.035754240522	0.0160936862293779	1.035754240522	418.977374898256	0	6.51012580496189						142	13	3	NaN	NaN	NaN	0.0057741	1	15084	51.531	40.829	1	33894			19637	232	16573	17051	19637	19637		
TVELSIPADPANLDSEAK	18	Unmodified	_TVELSIPADPANLDSEAK_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.475645	1868.93674	1.7637	0.0016499	-0.085961	-8.0415E-05	1.6777	0.0015694	935.475659442322	13.425	0.13304	13.425	13.363	13.496	0	276	46	1.13998907770044	0.0299622781618634	1.13998907770044	459.968688644267	0	12.0893349458289						385	16	3	NaN	NaN	NaN	4.4322E-07	1	28909	67.887	61.984	1	102400			19638	1625	16574	17052	19638	19638		
TVENVTVFGTASASK	15	Unmodified	_TVENVTVFGTASASK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.89102	1509.76749	1.8683	0.0014122	-1.2907	-0.00097563	0.57756	0.00043657	755.890202674119	8.8133	0.29296	8.8133	8.6534	8.9464	0	441	76	1.02971785871157	0.0502754509302745	1.02971785871157	416.203327401674	0	20.3209158574582						707	34	3	NaN	NaN	NaN	2.2491E-05	1	18795	110.58	76.858	1	230810			19639	2647	16575	17053	19639	19639		
TVEPPISQVGNVDTASELEK	20	Unmodified	_TVEPPISQVGNVDTASELEK_			0	0	0	O95104	O95104	O95104	SCAF4	Splicing factor, arginine/serine-rich 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.0366	2112.05864	0.9973	0.0010542	-0.5409	-0.00057175	0.4564	0.00048243	1057.53797869076	11.704	0.088675	11.704	11.66	11.749	0	129	43	1.23753038177212	0.0277753476234135	1.23753038177212	498.901428385556	0	11.1974306306592						257	11	3	NaN	NaN	NaN	0.05554	1	33487	20.734	18.632	1	42290			19640	404	16576	17054	19640	19640		
TVESLEETLK	10	Unmodified	_TVESLEETLK_			0	0	0	Q14914	Q14914	Q14914	PTGR1	Prostaglandin reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.805894	1147.59723	0.71951	0.00041358	-2.0086	-0.0011545	-1.2891	-0.00074097	574.8060672435	8.7866	0.30185	8.7866	8.6534	8.9553	0	624	52	0.906433495720521	0.0345056424959307	0.906433495720521	367.421249013978	0	13.9868024777779						811	35	5	NaN	NaN	NaN	0.0050863	1	8004	61.48	0	1	411820			19641	1778	16577	17055	19641	19641		
TVEYLHAQGVVHR	13	Unmodified	_TVEYLHAQGVVHR_			0	0	0	P51812	P51812	P51812	RPS6KA3	Ribosomal protein S6 kinase alpha-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.603797	1507.78956	-0.84837	-0.00042724	0.26271	0.0001323	-0.58566	-0.00029494	503.603849059465	5.0174	0.088659	5.0174	4.9908	5.0795	0	789	22	0.794378096728713	0.0143171820587036	0.794378096728713	481.624260217589	0	8.68037807917875						129	11	3	NaN	NaN	NaN	0.0033579	1	18736	40.386	33.639	1	34845			19642	1200	16578	17056	19642	19642		
TVEYLHSQGVVHR	13	Unmodified	_TVEYLHSQGVVHR_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.935435	1523.78447	-0.79579	-0.000405	1.6299	0.00082952	0.83413	0.00042452	508.936192736892	4.3435	0.10642	4.3435	4.3081	4.4145	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	480.338391031093	0	9.92017653409403						195	13	4	NaN	NaN	NaN	0.00020534	1	19241	48.785	42.919	1	54357			19643	1845	16579	17057	19643	19643		
TVEYLHSQGVVHR	13	Unmodified	_TVEYLHSQGVVHR_			0	0	0	Q15418	Q15418	Q15418	RPS6KA1	Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.899514	1523.78447	2.5936	0.0019787	-1.4458	-0.001103	1.1478	0.00087569	762.89808268999	4.3435	0.044338	4.3435	4.3258	4.3701	0	384	16	1.06790610341098	0.0100370657225251	1.06790610341098	431.602624502269	0	4.05655880634708						46	6	2	NaN	NaN	NaN	0.050425	1	19242	31.425	30.051	1	8777.9			19644	1845	16579	17057	19644	19644		
TVFAEHISDECK	12	Unmodified	_TVFAEHISDECK_			0	0	0	P39023	P39023	P39023	RPL3	60S ribosomal protein L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.329741	1434.64493	3.1224	0.0022429	-0.53736	-0.000386	2.585	0.0018569	718.32982847951	5.6026	0.6651	5.6026	5.5317	6.1968	0	471	73	1.00957851518677	0.0483611669559018	1.00957851518677	408.25722078439	0	19.5564736355881						1601	76	6	NaN	NaN	NaN	0.00021281	1	16523	106.35	80.74	1	1680800			19645	1010	16580	17058	19645	19645		
TVFEALQAPACHENMVK	17	Unmodified	_TVFEALQAPACHENMVK_			0	0	0	O95782	O95782	O95782	AP2A1	AP-2 complex subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.981727	1943.92335	0.030733	1.9945E-05	0.64841	0.00042081	0.67915	0.00044075	649.316126685591	10.241	0.10641	10.241	10.197	10.303	0	666	43	0.877991458330206	0.0284736285227984	0.877991458330206	531.23179006852	0	17.2280681166073						336	13	4	NaN	NaN	NaN	0.053122	1	30602	35.45	30.621	1	74687			19646	452	16581	17059	19646	19646		
TVFQFDVQR	9	Unmodified	_TVFQFDVQR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.29583	1138.57711	0.89306	0.00050931	-1.8171	-0.0010363	-0.92402	-0.00052697	570.29483131217	10.906	0.17737	10.906	10.844	11.021	0	648	46	0.890187667287968	0.0304799546936941	0.890187667287968	360.869968933576	0	12.3561589399688						371	21	3	NaN	NaN	NaN	0.00060709	1	7759	91.783	73.38	1	97916			19647	240	16582	17060	19647	19647		
TVFRPPLDIYDVLIR	15	Unmodified	_TVFRPPLDIYDVLIR_			0	0	1	Q9H6R4	Q9H6R4	Q9H6R4	NOL6	Nucleolar protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	606.348845	1816.02471	-0.89493	-0.00054264	0.36661	0.00022229	-0.52832	-0.00032035	606.683431677753	18.337	0.11526	18.337	18.275	18.39	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	522.875308011615	0	9.85772453068921						219	14	4	NaN	NaN	NaN	0.0029087	1	27639	57.003	55.634	1	56688			19648	2906	16583	17061	19648	19648		
TVFVCDEDATLELK	14	Unmodified	_TVFVCDEDATLELK_			0	0	0	P46926	P46926	P46926	GNPDA1	Glucosamine-6-phosphate isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.397821	1638.78109	1.6648	0.0013658	4.7696	0.003913	6.4344	0.0052788	820.402027660558	12.52	0.23936	12.52	12.458	12.697	0	351	73	1.08996939197032	0.0481414279912484	1.08996939197032	440.241251473357	0	19.4444382224991						624	28	3	NaN	NaN	NaN	0.0051666	1	22724	63.908	58.413	1	184800			19649	1092	16584	17062	19649	19649		
TVGAALDILCPSGPIK	16	Unmodified	_TVGAALDILCPSGPIK_			0	0	0	P16278	P16278	P16278	GLB1	Beta-galactosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.442366	1610.87018	1.7357	0.0013997	-1.1152	-0.00089935	0.6205	0.00050039	806.4415950557	14.959	0.18621	14.959	14.87	15.056	0	366	43	1.07994477139643	0.0280786163643747	1.07994477139643	436.255654751368	0	11.342668153959						386	22	3	NaN	NaN	NaN	7.2713E-05	1	21928	68.108	62.957	1	101170			19650	725	16585	17063	19650	19650		
TVGALQVLGTEAQSSLLK	18	Unmodified	_TVGALQVLGTEAQSSLLK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.014741	1814.01493	1.4665	0.0013316	0.33767	0.00030661	1.8042	0.0016383	908.516701698679	16.236	0.22166	16.236	16.156	16.377	0	264	157	1.14797626962532	0.103548802843174	1.14797626962532	463.294713182363	0	41.7897252608392						1557	26	5	NaN	NaN	NaN	2.7367E-19	1	27591	207.06	199.48	1	696600			19651	1465	16586	17064	19651	19651		
TVGFGTNNSEHITYLEHNPYEK	22	Unmodified	_TVGFGTNNSEHITYLEHNPYEK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	638.302847	2549.18228	0.30464	0.00019445	2.5569	0.0016321	2.8615	0.0018265	638.555079276274	9.4785	0.06207	9.4785	9.4519	9.514	0	594	22	0.926715457081489	0.0141885207468854	0.926715457081489	746.356462764153	0	11.4271258513927						114	8	3	NaN	NaN	NaN	0.0049759	1	37025	27.94	25.195	1	22193			19652	2640	16587	17065	19652	19652		
TVGFGTNNSEHITYLEHNPYEK	22	Unmodified	_TVGFGTNNSEHITYLEHNPYEK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	850.734703	2549.18228	2.0112	0.001711	0.94292	0.00080217	2.9541	0.0025132	851.069757126445	9.4874	0.14186	9.4874	9.4164	9.5583	0	345	28	1.09397730668811	0.0180343754835834	1.09397730668811	660.800558441571	0	10.8933935995203						355	17	5	NaN	NaN	NaN	0.00049821	1	37026	37.769	33.611	1	113600			19653	2640	16587	17065	19653	19653		
TVGLGDAISAEGLFYSEVHPHY	22	Unmodified	_TVGLGDAISAEGLFYSEVHPHY_			0	0	0	Q9BRR6	Q9BRR6	Q9BRR6	ADPGK	ADP-dependent glucokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.049852	2361.12773	0.60351	0.0004756	1.1302	0.00089065	1.7337	0.0013662	788.385488533343	17.229	0.11528	17.229	17.193	17.309	0	375	31	1.07392668217569	0.020067214614357	1.07392668217569	648.969326240954	0	12.1265324383489						264	14	5	NaN	NaN	NaN	0.021372	1	36138	29.98	29.647	1	61198			19654	2712	16588	17066	19654	19654		
TVGMLSNMIAFYDMAR	16	Unmodified	_TVGMLSNMIAFYDMAR_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	910.430618	1818.84668	0.66931	0.00060936	0.99261	0.0009037	1.6619	0.0015131	910.431703384446	19.339	0.062069	19.339	19.312	19.375	0	255	43	1.15396378101328	0.027932123570007	1.15396378101328	465.701735056928	0	11.2724841320017						170	8	5	NaN	NaN	NaN	0.010099	1	27684	57.042	56.366	1	45753			19655	1006	16589	17067	19655	19655		
TVGTPIASVPGSTNTGTVPGSEK	23	Unmodified	_TVGTPIASVPGSTNTGTVPGSEK_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1079.05532	2156.09609	2.2756	0.0024555	-1.6716	-0.0018037	0.60401	0.00065176	1079.55485845115	9.0617	0.12415	9.0617	9.0174	9.1415	0	195	82	1.19381749893585	0.0537323852402267	1.19381749893585	481.214678679859	0	21.658932392201						749	15	4	NaN	NaN	NaN	0.0010185	1	34127	32.692	19.347	1	156210			19656	2641	16590	17068	19656	19656		
TVGVEPAADGK	11	Unmodified	_TVGVEPAADGK_			0	0	0	P46779	P46779	P46779	RPL28	60S ribosomal protein L28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.272021	1042.52949	1.908	0.00099649	0.87402	0.00045648	2.782	0.001453	522.272161685967	3.2439	0.43462	3.2439	3.1641	3.5987	0	669	127	0.875957769340875	0.0854329046685316	0.875957769340875	355.492498119166	0	34.6714850477845						1216	50	4	NaN	NaN	NaN	0.0037922	1	5284	69.915	59.827	1	570340			19657	1088	16591	17069	19657	19657		
TVHYLPILFIDQLSNR	16	Unmodified	_TVHYLPILFIDQLSNR_			0	0	0	Q96KA5	Q96KA5	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.691271	1928.05198	-0.34574	-0.00022255	0.35607	0.0002292	0.010333	6.6515E-06	644.025737807607	18.319	0.10639	18.319	18.284	18.39	0	666	58	0.877991458330206	0.0386615689513493	0.877991458330206	531.262755710057	0	23.3936805037157						348	13	5	NaN	NaN	NaN	1.8829E-06	1	30254	95.138	81.36	1	117230			19658	2573	16592	17070	19658	19658		
TVIESSPESPVTITEPYR	18	Unmodified	_TVIESSPESPVTITEPYR_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.00985	2004.00515	1.8279	0.0018334	-0.15259	-0.00015305	1.6753	0.0016803	1003.51092387996	11.474	0.15076	11.474	11.42	11.571	0	237	43	1.16593139812432	0.0279090979609082	1.16593139812432	470.202337287555	0	11.2553132319086						504	18	4	NaN	NaN	NaN	6.8734E-08	1	31707	86.729	77.15	1	128130			19659	2355	16593	17071	19659	19659		
TVIGCSGFHGDCLTLTK	17	Unmodified	_TVIGCSGFHGDCLTLTK_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.634328	1864.88115	1.2815	0.00079788	-2.697	-0.0016793	-1.4156	-0.00088138	622.968416467462	9.8066	0.14189	9.8066	9.7622	9.9041	0	687	100	0.863749705078866	0.0670838885746758	0.863749705078866	522.771599613908	0	40.6015209409563						922	17	6	NaN	NaN	NaN	0.00072605	1	28797	51.07	44.693	1	332300			19660	781	16594	17072	19660	19660		
TVIGCSGFHGDCLTLTK	17	Unmodified	_TVIGCSGFHGDCLTLTK_			0	0	0	P20618	P20618	P20618	PSMB1	Proteasome subunit beta type-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.447853	1864.88115	2.3456	0.0021895	-2.0762	-0.001938	0.26941	0.00025148	933.947701964664	9.8154	0.10647	9.8154	9.7711	9.8776	0	141	40	1.2295923935727	0.0258108508316472	1.2295923935727	496.130254683075	0	10.4144626004754						357	13	5	NaN	NaN	NaN	3.5496E-14	1	28798	146.37	133.78	1	98741			19661	781	16594	17072	19661	19661		
TVIGELPPASSGSALAANVCK	21	Unmodified	_TVIGELPPASSGSALAANVCK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.53297	2041.05139	0.86083	0.00087937	-0.79768	-0.00081486	0.06315	6.451E-05	1022.03400313347	12.192	0.22174	12.192	12.112	12.334	0	129	22	1.23753038177212	0.0138867195400809	1.23753038177212	499.014795760926	0	5.59960273877033						241	26	3	NaN	NaN	NaN	8.2992E-06	1	32366	59.997	54.094	1	39334			19662	2175	16595	17073	19662	19662		
TVIIEQSWGSPK	12	Unmodified	_TVIIEQSWGSPK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.861534	1343.70852	2.1407	0.0014404	1.3857	0.00093241	3.5264	0.0023728	672.862716145662	9.7002	0.62953	9.7002	9.5317	10.161	0	495	73	0.993446994398923	0.048428051596847	0.993446994398923	401.993409779567	0	19.5961714114162						1780	72	4	NaN	NaN	NaN	1.8889E-07	1	13718	148.9	107.1	1	1734400			19663	635	16596	17074	19663	19663		
TVINYDVAR	9	Unmodified	_TVINYDVAR_			0	0	0	Q86XP3	Q86XP3	Q86XP3	DDX42	ATP-dependent RNA helicase DDX42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.782556	1049.55056	0.54831	0.00028829	-3.7157	-0.0019537	-3.1674	-0.0016654	525.781107703953	6.8087	0.1862	6.8087	6.7023	6.8885	0	681	52	0.867820189810857	0.0345919271139168	0.867820189810857	352.159311568983	0	14.037319460079						303	22	3	NaN	NaN	NaN	0.056852	1	5459	42.075	11.482	1	90102			19664	2189	16597	17075	19664	19664		
TVIPGMPTVIPPGLTR	16	Unmodified	_TVIPGMPTVIPPGLTR_			0	0	0	Q15637	Q15637	Q15637	SF1	Splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.976376	1647.9382	1.5229	0.0012564	2.0615	0.0017007	3.5844	0.0029571	825.48088639048	16.369	0.31033	16.369	16.218	16.528	0	363	166	1.08195024817156	0.110013328361356	1.08195024817156	436.981953214629	0	44.4325782892794						1779	36	4	NaN	NaN	NaN	0.0013845	1	22983	63.908	52.937	1	483040			19665	1858	16598	17076	19665	19665		
TVIVHGFTLGEK	12	Unmodified	_TVIVHGFTLGEK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	434.246839	1299.71869	-1.644	-0.00071391	0.7003	0.0003041	-0.94372	-0.00040981	434.247100244987	9.3189	0.09758	9.3189	9.2834	9.381	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	514.551606596559	0	9.89829933689958						181	12	3	NaN	NaN	NaN	0.055782	1	12351	16.288	9.597	1	53006			19666	3037	16599	17077	19666	19666		
TVIVHGFTLGEK	12	Unmodified	_TVIVHGFTLGEK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.86662	1299.71869	0.92981	0.00060518	1.9108	0.0012437	2.8406	0.0018488	650.868014620048	9.3278	0.1153	9.3278	9.2923	9.4076	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.581410562531	0	8.1633644742609						254	14	4	NaN	NaN	NaN	0.0013493	1	12352	83.775	71.179	1	73407			19667	3037	16599	17077	19667	19667		
TVIVNMVDVAK	11	Unmodified	_TVIVNMVDVAK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.836474	1187.65839	0.9531	0.00056694	0.94134	0.00055994	1.8944	0.0011269	594.837105994526	11.199	0.10639	11.199	11.172	11.279	0	525	37	0.973257487423603	0.0242475250130607	0.973257487423603	394.350184461412	0	9.82475458467388						241	13	3	NaN	NaN	NaN	0.0081917	1	9104	50.297	27.244	1	57512			19668	1261	16600	17078	19668	19668		
TVLCGTCGQPADK	13	Unmodified	_TVLCGTCGQPADK_			0	0	0	P02545	P02545	P02545	LMNA	Prelamin-A/C;Lamin-A/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.823769	1405.63298	3.1787	0.0022372	-2.0748	-0.0014603	1.1039	0.00077697	703.822625748044	3.9711	0.3813	3.9711	3.9002	4.2815	0	525	58	0.973257487423603	0.0383786491892638	0.973257487423603	393.647154025062	0	15.522763733031						1362	44	4	NaN	NaN	NaN	0.00031489	1	15632	82.437	70.955	1	421480			19669	493	16601	17079	19669	19669		
TVLDPVTGDLSDTR	14	Unmodified	_TVLDPVTGDLSDTR_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.880652	1487.74675	1.9691	0.0014667	0.21974	0.00016368	2.1888	0.0016304	744.880924532129	10.924	0.29264	10.924	10.817	11.11	0	447	52	1.02569221487577	0.034215621891726	1.02569221487577	414.631929700621	0	13.8315267729622						723	34	4	NaN	NaN	NaN	0.008277	1	18172	46.068	42.966	1	433440			19670	1841	16602	17080	19670	19670		
TVLDQQQTPSR	11	Unmodified	_TVLDQQQTPSR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.830766	1271.64698	2.6557	0.0016912	-1.4196	-0.00090405	1.2361	0.00078718	636.829939734304	3.9268	0.13293	3.9268	3.8914	4.0243	0	597	28	0.924688525662974	0.018242384517949	0.924688525662974	374.386434243861	0	7.38594791893161						202	16	3	NaN	NaN	NaN	0.00035771	1	11542	83.438	68.29	1	49343			19671	1055	16603	17081	19671	19671		
TVLEHYALEDDPLAAFK	17	Unmodified	_TVLEHYALEDDPLAAFK_			0	0	0	Q3ZCQ8	Q3ZCQ8	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.663158	1930.96764	-0.61643	-0.00039739	-0.70662	-0.00045553	-1.3231	-0.00085292	644.997315647984	15.331	0.097526	15.331	15.278	15.375	0	693	34	0.85967808974117	0.0223954425033767	0.85967808974117	520.175939422201	0	13.5510843907598						230	12	3	NaN	NaN	NaN	1.2049E-06	1	30331	69.327	50.796	1	56918			19672	1937	16604	17082	19672	19672		
TVLEHYALEDDPLAAFK	17	Unmodified	_TVLEHYALEDDPLAAFK_			0	0	0	Q3ZCQ8	Q3ZCQ8	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.663158	1930.96764	0.51614	0.00033273	-0.87294	-0.00056275	-0.35681	-0.00023002	644.662539868575	15.322	0.18622	15.322	15.269	15.455	0	606	82	0.918606045818476	0.0547423659121806	0.918606045818476	555.832199415213	0	33.1236331228899						646	22	5	NaN	NaN	NaN	0.00013584	1	30333	90.156	75.763	1	215140			19673	1937	16604	17082	19673	19673		
TVLEHYALEDDPLAAFK	17	Unmodified	_TVLEHYALEDDPLAAFK_			0	0	0	Q3ZCQ8	Q3ZCQ8	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.491098	1930.96764	1.7231	0.0016654	0.16533	0.00015979	1.8885	0.0018252	966.992823892714	15.322	0.17734	15.322	15.278	15.455	0	177	64	1.2057522832638	0.0417574339727618	1.2057522832638	486.387996859839	0	16.8445168596665						802	21	5	NaN	NaN	NaN	1.938E-10	1	30334	92.747	83.591	1	219500			19674	1937	16604	17082	19674	19674		
TVLELQYVLDK	11	Unmodified	_TVLELQYVLDK_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.874111	1319.73367	0.64232	0.00042449	1.9205	0.0012692	2.5628	0.0016937	660.874723895992	14.905	0.3015	14.905	14.799	15.101	0	495	52	0.993446994398923	0.0343008202901166	0.993446994398923	402.067746719429	0	13.8822238150909						762	35	5	NaN	NaN	NaN	0.0033317	1	12984	78.932	62.28	1	449220			19675	1752	16605	17083	19675	19675		
TVLEQVLPI	9	Unmodified	_TVLEQVLPI_			0	0	0	P25685	P25685	P25685	DNAJB1	DnaJ homolog subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.307875	1010.6012	-1.6343	-0.00082746	0.56553	0.00028633	-1.0688	-0.00054113	506.308036638366	18.248	0.11528	18.248	18.195	18.311	0	726	70	0.837263974740672	0.0468724117223618	0.837263974740672	339.92916733922	0	19.0301988006812						414	14	3	NaN	NaN	NaN	0.0012706	1	4533	67.903	65.304	1	117810			19676	839	16606	17084	19676	19676		
TVLGTPEVLLGALPGAGGTQR	21	Unmodified	_TVLGTPEVLLGALPGAGGTQR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	669.712623	2006.11604	0.89133	0.00059693	0.78419	0.00052518	1.6755	0.0011221	670.047375577361	17.477	0.19509	17.477	17.397	17.592	0	462	52	1.01562323939346	0.0342345274153426	1.01562323939346	614.371456509088	0	20.7091721174332						938	23	5	NaN	NaN	NaN	5.9919E-06	1	31739	105.78	104.26	1	406750			19677	1026	16607	17085	19677	19677		
TVLGTPEVLLGALPGAGGTQR	21	Unmodified	_TVLGTPEVLLGALPGAGGTQR_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.0653	2006.11604	1.404	0.0014097	0.46555	0.00046744	1.8695	0.0018771	1004.56718271232	17.486	0.19509	17.486	17.397	17.592	0	180	91	1.203763835057	0.0596985638958039	1.203763835057	485.456065570729	0	24.0753452671282						1324	23	5	NaN	NaN	NaN	3.4282E-11	1	31740	112.67	108.82	1	483660			19678	1026	16607	17085	19678	19678		
TVLIACNVK	9	Unmodified	_TVLIACNVK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.291702	1016.56885	0.20528	0.00010455	0.64431	0.00032814	0.84959	0.00043269	509.292113193247	6.5604	0.13302	6.5604	6.5161	6.6491	0	681	49	0.867820189810857	0.0325503275293179	0.867820189810857	352.307204467762	0	13.2143905281386						321	16	3	NaN	NaN	NaN	0.044796	1	4670	33.396	11.009	1	69570			19679	835	16608	17086	19679	19679		
TVLIMELINNVAK	13	Unmodified	_TVLIMELINNVAK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.423445	1456.83234	1.4947	0.0010903	0.12522	9.1338E-05	1.62	0.0011816	729.423958889691	19.729	0.17734	19.729	19.676	19.853	0	387	100	1.06589869032374	0.0663270087780938	1.06589869032374	430.969490803879	0	26.817668000847						1236	21	6	NaN	NaN	NaN	4.1756E-11	1	17165	150.21	116.78	1	1022700			19680	541	16609	17087	19680	19680		
TVLIMELINNVAK	13	Oxidation (M)	_TVLIM(Oxidation (M))ELINNVAK_	TVLIM(1)ELINNVAK	TVLIM(88)ELINNVAK	0	1	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.420902	1472.82725	0.91211	0.00067261	0.23512	0.00017338	1.1472	0.00084599	737.421452147015	17.504	0.12415	17.504	17.45	17.575	0	402	52	1.05585747106793	0.0341495757377568	1.05585747106793	426.865956923526	0	13.8061165690157						447	15	4	NaN	NaN	NaN	0.0011727	1	17683	87.942	72.063	1	157520			19681	541	16609	17088	19681	19681	113	
TVLMLADQMISR	12	Unmodified	_TVLMLADQMISR_			0	0	0	P48729;Q8N752	P48729	P48729	CSNK1A1;CSNK1A1L	Casein kinase I isoform alpha;Casein kinase I isoform alpha-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.365072	1376.71559	0.76418	0.0005268	0.73699	0.00050806	1.5012	0.0010349	689.365790708891	15.021	0.12413	15.021	14.967	15.092	0	468	52	1.01159370163332	0.0342345274153426	1.01159370163332	409.23645837311	0	13.8494503582923						321	15	3	NaN	NaN	NaN	0.012893	1	14709	38.1	31.353	1	82126			19682	1116	16610	17089	19682	19682		
TVLMNPNIASVQTNEVGLK	19	Unmodified	_TVLMNPNIASVQTNEVGLK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.54334	2027.07213	2.1327	0.0021637	0.58513	0.00059364	2.7178	0.0027574	1015.04606771133	13.212	0.204	13.212	13.159	13.363	0	210	109	1.18386433251387	0.0716284754478818	1.18386433251387	477.397037119404	0	28.8844093136814						2091	24	6	NaN	NaN	NaN	2.8153E-45	1	32103	240.82	207.06	1	1459000			19683	922	16611	17090	19683	19683		
TVLMNPNIASVQTNEVGLK	19	Oxidation (M)	_TVLM(Oxidation (M))NPNIASVQTNEVGLK_	TVLM(1)NPNIASVQTNEVGLK	TVLM(110)NPNIASVQTNEVGLK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.5408	2043.06704	1.5839	0.0016196	-0.71015	-0.00072616	0.87377	0.00089347	1023.04193923539	11.678	0.13299	11.678	11.642	11.775	0	219	100	1.17788915118882	0.0656819610255788	1.17788915118882	474.962234891654	0	26.4850482486315						882	16	5	NaN	NaN	NaN	5.6345E-10	1	32405	111.75	99.07	1	288140			19684	922	16611	17091	19684	19684	318	
TVLQELINVLK	11	Unmodified	_TVLQELINVLK_			0	0	0	P52732	P52732	P52732	KIF11	Kinesin-like protein KIF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.39247	1268.77039	0.024007	1.5254E-05	-1.1701	-0.00074345	-1.1461	-0.0007282	635.391684607607	19.969	0.053241	19.969	19.951	20.004	0	552	34	0.955063035883597	0.0222499784868294	0.955063035883597	386.693835779234	0	9.00875565675875						115	7	4	NaN	NaN	NaN	0.00057162	1	11485	97.277	66.685	1	36588			19685	1219	16612	17092	19685	19685		
TVLQIDDNVTSAVEGINR	18	Unmodified	_TVLQIDDNVTSAVEGINR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.672604	1942.99598	0.88037	0.00057107	-2.1462	-0.0013922	-1.2658	-0.0008211	649.005327050739	14.444	0.070952	14.444	14.418	14.489	0	591	43	0.928742107665821	0.0283593603705795	0.928742107665821	561.94055756928	0	17.1589881059703						232	9	3	NaN	NaN	NaN	0.00052706	1	30590	63.79	50.616	1	53705			19686	1867	16613	17093	19686	19686		
TVLQIDDNVTSAVEGINR	18	Unmodified	_TVLQIDDNVTSAVEGINR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.505268	1942.99598	2.3312	0.0022671	-0.36905	-0.00035891	1.9622	0.0019082	973.006762059398	14.444	0.15075	14.444	14.4	14.551	-1.7764E-15	225	34	1.17390432875292	0.0219210434854844	1.17390432875292	473.519945784925	0	8.84233158405902						435	18	5	NaN	NaN	NaN	9.1664E-26	1	30591	199.04	188.07	1	179780			19687	1867	16613	17093	19687	19687		
TVLQMDELK	9	Unmodified	_TVLQMDELK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.78645	1075.55835	0.31283	0.00016855	0.84653	0.0004561	1.1594	0.00062465	538.786705036888	9.4253	0.11533	9.4253	9.3721	9.4874	0	618	34	0.910492137470517	0.0223147973671984	0.910492137470517	369.359746227565	0	9.05245367144636						232	14	3	NaN	NaN	NaN	0.012265	1	6101	48.157	2.6683	1	65426			19688	1047	16614	17094	19688	19688		
TVLSANADHMAQIEGLMDDVDFK	23	Unmodified	_TVLSANADHMAQIEGLMDDVDFK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	840.729685	2519.16722	1.1986	0.0010077	0.49216	0.00041377	1.6908	0.0014215	841.064402551609	17.246	0.17735	17.246	17.202	17.38	0	318	37	1.11199926528787	0.0240143942796327	1.11199926528787	671.729843825891	0	14.5064712024383						631	21	6	NaN	NaN	NaN	2.1354E-06	1	36916	82.747	73.616	1	284860			19689	3410	16615	17095	19689	19689		
TVLVNADGEEVAMR	14	Unmodified	_TVLVNADGEEVAMR_			0	0	0	Q03252	Q03252	Q03252	LMNB2	Lamin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.377223	1502.73989	1.8568	0.001397	1.0322	0.0007766	2.889	0.0021736	752.37790637531	9.1149	0.1863	9.1149	9.044	9.2303	0	423	49	1.04178812298108	0.0321829369854028	1.04178812298108	421.09990652503	0	13.0086257054595						514	22	4	NaN	NaN	NaN	0.0026578	1	18596	68.548	60.991	1	170580			19690	1537	16616	17096	19690	19690		
TVMAHGCYLSAEELNVFHER	20	Unmodified	_TVMAHGCYLSAEELNVFHER_			0	0	0	Q9Y2T3	Q9Y2T3	Q9Y2T3	GDA	Guanine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	591.528135	2362.08344	-0.037032	-2.1905E-05	2.6448	0.0015645	2.6078	0.0015426	591.780724882951	11.899	0.070963	11.899	11.873	11.944	0	552	22	0.955063035883597	0.0141590759980551	0.955063035883597	769.516962251539	0	11.4083036835697						178	9	5	NaN	NaN	NaN	0.066588	1	36146	17.807	15.26	1	37016			19691	3353	16617	17097	19691	19691		
TVMDEGPQVFAPLSEESK	18	Unmodified	_TVMDEGPQVFAPLSEESK_			0	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.469506	1962.92446	2.0489	0.002013	-5.7292	-0.0056288	-3.6803	-0.0036158	982.967636609276	13.824	0.18619	13.824	13.744	13.93	0	225	52	1.17390432875292	0.0338826381557076	1.17390432875292	473.485869263621	0	13.6663184444877						700	22	6	NaN	NaN	NaN	0.0083113	1	30974	56.08	35.791	1	148160			19692	193	16618	17098	19692	19692		
TVMVQEGNVESAYR	14	Unmodified	_TVMVQEGNVESAYR_			0	0	0	P82921	P82921	P82921	MRPS21	28S ribosomal protein S21, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.88013	1581.74571	2.2009	0.0017428	-2.1762	-0.0017233	0.024642	1.9514E-05	791.877574792583	7.456	0.097551	7.456	7.4117	7.5092	0	423	34	1.04178812298108	0.0221211851351335	1.04178812298108	420.907913153154	0	8.93750050159935						279	12	4	NaN	NaN	NaN	7.1229E-06	1	21021	112.73	94.996	1	83724			19693	1475	16619	17099	19693	19693		
TVNELQNLSSAEVVVPR	17	Unmodified	_TVNELQNLSSAEVVVPR_			0	0	0	O00425	O00425	O00425	IGF2BP3	Insulin-like growth factor 2 mRNA-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.999622	1853.98469	1.9034	0.0017664	-1.5877	-0.0014734	0.31572	0.00029298	927.998253744831	13.309	0.16849	13.309	13.247	13.416	0	285	67	1.13399579921816	0.0439477106737494	1.13399579921816	457.57768217299	0	17.7333034220833						583	20	4	NaN	NaN	NaN	9.0793E-14	1	28577	133.13	119.33	1	180350			19694	78	16620	17100	19694	19694		
TVNTFSQSVSSLFGEDNVR	19	Unmodified	_TVNTFSQSVSSLFGEDNVR_			0	0	0	Q8WY22	Q8WY22	Q8WY22	BRI3BP	BRI3-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.339514	2085.99671	0.47652	0.00033182	-0.67681	-0.00047129	-0.20029	-0.00013947	696.673089554671	16.12	0.088686	16.12	16.094	16.182	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	586.144741169397	0	9.77733274120885						172	11	4	NaN	NaN	NaN	0.0009979	1	33121	63.79	63.171	1	35062			19695	2399	16621	17101	19695	19695		
TVNTFSQSVSSLFGEDNVR	19	Unmodified	_TVNTFSQSVSSLFGEDNVR_			0	0	0	Q8WY22	Q8WY22	Q8WY22	BRI3BP	BRI3-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.00563	2085.99671	1.5821	0.0016518	0.16732	0.00017469	1.7495	0.0018264	1044.50764465296	16.129	0.15074	16.129	16.076	16.227	0	189	43	1.1977968526266	0.0278516583469064	1.1977968526266	482.922550200403	0	11.2291110522656						323	18	2	NaN	NaN	NaN	4.5457E-15	1	33123	120.37	111.21	1	115800			19696	2399	16621	17101	19696	19696		
TVNVVQFEPSK	11	Unmodified	_TVNVVQFEPSK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.335153	1246.65575	1.5807	0.0009869	-0.92749	-0.00057906	0.65323	0.00040784	624.334501335969	8.8931	0.29288	8.8931	8.7422	9.0351	-1.7764E-15	579	52	0.936845902828289	0.034438755237733	0.936845902828289	379.390372667764	0	13.9465115281101						893	34	4	NaN	NaN	NaN	6.6517E-17	1	10830	215.84	160.61	1	493590			19697	1035	16622	17102	19697	19697		
TVPFCSTFAAFFTR	14	Unmodified	_TVPFCSTFAAFFTR_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.400501	1650.78645	0.9026	0.00074591	-0.50361	-0.00041618	0.39899	0.00032972	826.901310731523	19.153	0.13299	19.153	19.1	19.233	0	378	43	1.07192009927972	0.0281018521198355	1.07192009927972	432.924722151358	0	11.3497139657081						522	16	5	NaN	NaN	NaN	0.0016973	1	23068	36.46	35.84	1	178580			19698	888	16623	17103	19698	19698		
TVPPAVTGITFLSGGQSEEEASINLNAINK	30	Unmodified	_TVPPAVTGITFLSGGQSEEEASINLNAINK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1019.86281	3056.56661	1.7888	0.0018243	-0.226	-0.00023049	1.5628	0.0015939	1020.53084803574	17.814	0.23937	17.814	17.716	17.956	0	237	109	1.16593139812432	0.0718058095076846	1.16593139812432	703.62906608969	0	43.3341573655081						2146	28	5	NaN	NaN	NaN	4.0764E-15	1	38299	148.89	147.51	1	507430			19699	504	16624	17104	19699	19699		
TVPPAVTGITFLSGGQSEEEASINLNAINK	30	Unmodified	_TVPPAVTGITFLSGGQSEEEASINLNAINK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1019.86281	3056.56661	1.8704	0.0019075	-0.0025605	-2.6114E-06	1.8678	0.0019049	1020.19740902189	17.752	0.17733	17.752	17.716	17.894	0	360	55	1.08395544855938	0.0360911337192322	1.08395544855938	654.157320410586	0	21.7806731408847						727	21	5	NaN	NaN	NaN	3.5303E-11	1	38300	84.309	79.192	1	195700			19700	504	16624	17104	19700	19700		
TVPYTDPDHASLK	13	Unmodified	_TVPYTDPDHASLK_			0	0	0	Q5JRX3	Q5JRX3	Q5JRX3	PITRM1	Presequence protease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.359356	1442.70416	2.4027	0.0017356	-0.62434	-0.000451	1.7784	0.0012846	722.359048799586	5.5937	0.14192	5.5937	5.5317	5.6736	0	465	58	1.01360860968299	0.0382674073234339	1.01360860968299	409.865059546294	0	15.4738949841861						319	17	2	NaN	NaN	NaN	0.023176	1	16747	23.804	17.938	1	67279			19701	1966	16625	17105	19701	19701		
TVQDALESLVAR	12	Unmodified	_TVQDALESLVAR_			0	0	0	Q14694	Q14694	Q14694	USP10	Ubiquitin carboxyl-terminal hydrolase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.356616	1300.69868	0.78303	0.00051003	-1.3769	-0.00089684	-0.59386	-0.00038681	651.35587262693	15.03	0.15074	15.03	14.976	15.127	0	522	46	0.975277694896658	0.0302905481075687	0.975277694896658	394.77412925527	0	12.2610460758024						409	18	4	NaN	NaN	NaN	0.0021973	1	12374	40.533	23.063	1	111280			19702	1769	16626	17106	19702	19702		
TVQDLTSVVQTLLQQMQDK	19	Unmodified	_TVQDLTSVVQTLLQQMQDK_			0	0	0	O75506	O75506	O75506	HSBP1	Heat shock factor-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	725.715704	2174.12528	0.20767	0.00015071	-0.53056	-0.00038504	-0.32289	-0.00023433	726.049185885045	20.173	0.026601	20.173	20.164	20.19	0	525	22	0.973257487423603	0.014139497057216	0.973257487423603	588.431080461373	0	8.54873416138093						52	4	3	NaN	NaN	NaN	0.030389	1	34367	16.102	15.667	1	29641			19703	340	16627	17107	19703	19703		
TVQGSGHQEHINIHK	15	Unmodified	_TVQGSGHQEHINIHK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.288648	1683.84412	0.36811	0.00020698	1.0369	0.00058305	1.405	0.00079004	562.289500657395	2.1355	0.23942	2.1355	2.1178	2.3572	0	744	28	0.82502364452135	0.0183694328474171	0.82502364452135	499.728966965386	0	11.1266358989087						359	28	4	NaN	NaN	NaN	0.00084434	1	24013	70.195	58.238	1	72612			19704	1742	16628	17108	19704	19704		
TVQIPVYDFVSHSR	14	Unmodified	_TVQIPVYDFVSHSR_			0	0	0	Q9BZX2	Q9BZX2	Q9BZX2	UCK2	Uridine-cytidine kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	549.954495	1646.84166	-0.94842	-0.00052159	-1.104	-0.00060715	-2.0524	-0.0011287	549.95398224171	13.096	0.23941	13.096	12.946	13.185	0	723	52	0.839303037468863	0.0346592613234649	0.839303037468863	508.471332125114	0	20.9974705069126						711	28	4	NaN	NaN	NaN	0.0025193	1	22948	62.705	61.823	1	243190			19705	2815	16629	17109	19705	19705		
TVQLTSSELESTLETLK	17	Unmodified	_TVQLTSSELESTLETLK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.001728	1877.98335	-0.40689	-0.00025512	0.93871	0.00058857	0.53182	0.00033345	627.337917794294	16.457	0.15075	16.457	16.413	16.564	0	627	61	0.90440375274676	0.0406258559608167	0.90440375274676	547.348670875583	0	24.5869261331585						318	18	3	NaN	NaN	NaN	0.0062809	1	29105	54.309	53.427	1	81504			19706	1055	16630	17110	19706	19706		
TVQLTSSELESTLETLK	17	Unmodified	_TVQLTSSELESTLETLK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.998953	1877.98335	0.94307	0.00088648	0.56096	0.0005273	1.504	0.0014138	939.999904732427	16.457	0.16848	16.457	16.377	16.546	0	132	109	1.23554629282893	0.0714517975034492	1.23554629282893	498.506910967481	0	28.8287173562426						1291	20	5	NaN	NaN	NaN	1.9535E-10	1	29107	150.81	139.84	1	578230			19707	1055	16630	17110	19707	19707		
TVQSLEIDLDSMR	13	Unmodified	_TVQSLEIDLDSMR_			0	0	0	P05783;CON__H-INV:HIT000015463	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.877056	1505.73956	1.8362	0.0013842	1.2001	0.00090473	3.0363	0.002289	753.87835029317	13.948	0.35466	13.948	13.806	14.161	0	405	88	1.05384839605172	0.0582310963458759	1.05384839605172	425.96702971596	0	23.5370924703095						1323	41	5	NaN	NaN	NaN	3.0799E-11	1	18678	148.76	113.81	1	566900			19708	536	16631	17111	19708	19708		
TVQSLEIDLDSMR	13	Oxidation (M)	_TVQSLEIDLDSM(Oxidation (M))R_	TVQSLEIDLDSM(1)R	TVQSLEIDLDSM(95)R	0	1	0	P05783;CON__H-INV:HIT000015463	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.874513	1521.73447	2.042	0.0015557	-4.2154	-0.0032116	-2.1734	-0.0016559	761.874451446353	11.163	0.17734	11.163	11.092	11.27	0	432	97	1.035754240522	0.0642949135507298	1.035754240522	418.613284224679	0	25.9856091990011						1184	21	4	NaN	NaN	NaN	0.00010424	1	19175	95.138	81.34	1	302040			19709	536	16631	17112	19709	19709	105	
TVQSNSPISALAPTGK	16	Unmodified	_TVQSNSPISALAPTGK_			0	0	0	O95292	O95292	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.925394	1569.83624	1.4263	0.0011209	-0.70208	-0.00055178	0.7242	0.00056916	785.925223292977	9.3898	0.19517	9.3898	9.2923	9.4874	0	405	31	1.05384839605172	0.0200921384005985	1.05384839605172	425.808587331184	0	8.11825031083657						366	23	4	NaN	NaN	NaN	0.0001837	1	20667	75.012	67.455	1	97417			19710	415	16632	17113	19710	19710		
TVQTAVFLYSLYK	13	Unmodified	_TVQTAVFLYSLYK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.921592	1531.82863	1.538	0.0011795	1.8184	0.0013945	3.3564	0.0025741	766.92281926946	16.165	0.097543	16.165	16.129	16.227	0	300	28	1.12400150285141	0.0179946865546097	1.12400150285141	454.252530097822	0	7.27234961431304						189	12	3	NaN	NaN	NaN	0.00045979	1	19497	57.003	50.256	1	50095			19711	1776	16633	17114	19711	19711		
TVQVSATEDGNVTK	14	Unmodified	_TVQVSATEDGNVTK_			0	0	0	O60443	O60443	O60443	DFNA5	Non-syndromic hearing impairment protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.865002	1447.71545	2.61	0.0018919	-1.3606	-0.00098628	1.2494	0.00090564	724.86424343905	4.5031	0.1596	4.5031	4.4588	4.6184	0	486	61	0.999498404980629	0.0403121021954936	0.999498404980629	404.146140982091	0	16.3001566145572						343	19	3	NaN	NaN	NaN	0.00092541	1	16917	68.108	60.107	1	63008			19712	259	16634	17115	19712	19712		
TVQVVPHITDAIQEWVMR	18	Unmodified	_TVQVVPHITDAIQEWVMR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.041975	2121.10409	-0.60543	-0.00042867	-0.094929	-6.7214E-05	-0.70036	-0.00049588	708.041571844364	18.036	0.10639	18.036	17.991	18.098	0	624	25	0.906433495720521	0.0162368192859779	0.906433495720521	548.11620366557	0	9.81833062067039						189	13	3	NaN	NaN	NaN	0.010741	1	33638	36.96	34.413	1	35305			19713	741	16635	17116	19713	19713		
TVQVVPHITDAIQEWVMR	18	Unmodified	_TVQVVPHITDAIQEWVMR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.041975	2121.10409	0.4791	0.00033922	0.51471	0.00036444	0.99381	0.00070366	708.376629408862	18.045	0.16847	18.045	17.956	18.124	0	492	40	0.995464410099171	0.0262227841979634	0.995464410099171	601.95278943121	0	15.8567980276102						470	20	5	NaN	NaN	NaN	0.0010631	1	33639	28.277	22.374	1	174390			19714	741	16635	17116	19714	19714		
TVSDLIDQK	9	Unmodified	_TVSDLIDQK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	509.774396	1017.53424	0.48225	0.00024584	1.5966	0.00081393	2.0789	0.0010598	509.775237595789	6.8796	0.30146	6.8796	6.7466	7.0481	0	693	52	0.85967808974117	0.0346207605842022	0.85967808974117	348.997345521508	0	14.0547417550911						469	35	3	NaN	NaN	NaN	0.011627	1	4681	46.447	33.619	1	205410			19715	3329	16636	17117	19715	19715		
TVSLGAGAK	9	Unmodified	_TVSLGAGAK_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	402.23471	802.454868	-0.712	-0.00028639	-2.508	-0.0010088	-3.22	-0.0012952	402.234696522396	3.1375	0.29264	3.1375	3.0843	3.3769	0	852	28	0.751366682244005	0.0184617312654048	0.751366682244005	306.115411991819	0	7.52152125712217						348	34	3	NaN	NaN	NaN	0.029373	1	1009	34.931	17.237	1	97316			19716	547	16637	17118	19716	19716		
TVSLLDENNVSSYLSK	16	Unmodified	_TVSLLDENNVSSYLSK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.951806	1767.88906	2.2586	0.0019987	0.16475	0.0001458	2.4233	0.0021445	885.454204717774	14.125	0.20395	14.125	14.028	14.232	0	306	37	1.12000185836644	0.0240044781973821	1.12000185836644	452.09440250272	0	9.68952876905342						385	24	4	NaN	NaN	NaN	5.222E-12	1	26345	132.9	126.53	1	278200			19717	1465	16638	17119	19717	19717		
TVSPDRLELEAAQK	14	Unmodified	_TVSPDRLELEAAQK_			0	0	1	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.614138	1555.82059	0.41643	0.00021638	0.22217	0.00011544	0.6386	0.00033183	519.614192937339	6.8796	0.18619	6.8796	6.7909	6.9771	0	732	70	0.833184998970724	0.046937604792554	0.833184998970724	505.010841075012	0	28.4498632399971						891	22	4	NaN	NaN	NaN	0.002583	1	20236	52.837	35.846	1	393150			19718	1780	16639	17120	19718	19718		
TVSPDRLELEAAQK	14	Unmodified	_TVSPDRLELEAAQK_			0	0	1	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.917569	1555.82059	2.5175	0.0019609	-0.82085	-0.00063938	1.6966	0.0013215	778.916956039081	6.8707	0.23055	6.8707	6.7821	7.0126	0	402	46	1.05585747106793	0.0301361332726353	1.05585747106793	426.653959035375	0	12.1774964169953						686	27	4	NaN	NaN	NaN	0.0056478	1	20238	87.573	57.818	1	346540			19719	1780	16639	17120	19719	19719		
TVSQIISLQTLK	12	Unmodified	_TVSQIISLQTLK_			0	0	0	O76021	O76021	O76021	RSL1D1	Ribosomal L1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.90066	1329.78677	1.0756	0.00071624	0.56191	0.00037417	1.6375	0.0010904	665.901029923104	13.088	0.1685	13.088	13.043	13.212	0	459	82	1.01763759082241	0.0544326408515292	1.01763759082241	411.825904846236	0	22.0282463757408						900	20	4	NaN	NaN	NaN	0.00050119	1	13299	83.775	78.279	1	405170			19720	378	16640	17121	19720	19720		
TVTAAGAENIQQK	13	Unmodified	_TVTAAGAENIQQK_			0	0	0	Q29RF7	Q29RF7	Q29RF7	PDS5A	Sister chromatid cohesion protein PDS5 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.851698	1329.68884	2.9143	0.0019405	-2.3588	-0.0015706	0.55551	0.00036988	665.850136237747	3.8736	0.10638	3.8736	3.8381	3.9445	0	540	64	0.963152256458504	0.0424302486818954	0.963152256458504	389.776640978026	0	17.1710336514215						249	13	3	NaN	NaN	NaN	0.003331	1	13283	75.474	58.822	1	53891			19721	1921	16641	17122	19721	19721		
TVTAMDVVYALK	12	Unmodified	_TVTAMDVVYALK_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.854864	1309.69517	0.72086	0.00047278	-0.45175	-0.00029628	0.26911	0.0001765	655.854637026543	15.978	0.27489	15.978	15.872	16.147	0	468	25	1.01159370163332	0.0161248344128324	1.01159370163332	409.444602653656	0	6.52655943622244						310	32	2	NaN	NaN	NaN	0.062695	1	12648	19.324	15.121	1	77960			19722	1397	16642	17123	19722	19722		
TVTAMDVVYALK	12	Unmodified	_TVTAMDVVYALK_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.854864	1309.69517	1.6346	0.001072	1.1254	0.00073811	2.76	0.0018101	655.855865822863	15.225	0.62968	15.225	15.154	15.783	0	462	115	1.01562323939346	0.0766248499794255	1.01562323939346	411.075559457303	0	31.0140629436912						3697	72	6	NaN	NaN	NaN	3.2386E-05	1	12649	104.39	83.306	1	7082000			19723	1397	16642	17123	19723	19723		
TVTAMDVVYALK	12	Oxidation (M)	_TVTAM(Oxidation (M))DVVYALK_	TVTAM(1)DVVYALK	TVTAM(150)DVVYALK	0	1	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.852321	1325.69009	1.4865	0.00098683	2.0893	0.001387	3.5758	0.0023738	663.85381005398	12.165	0.20397	12.165	12.094	12.298	0	456	73	1.01965166402748	0.0483277765845833	1.01965166402748	412.654084451132	0	19.5583012352468						1355	24	6	NaN	NaN	NaN	1.8464E-07	1	13159	147.78	126.69	1	2404000			19724	1397	16642	17124	19724	19724	500	
TVTLPENEDELESTNR	16	Unmodified	_TVTLPENEDELESTNR_			0	0	0	P30876	P30876	P30876	POLR2B	DNA-directed RNA polymerase II subunit RPB2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.936884	1845.85922	2.3434	0.0021651	-2.0617	-0.0019048	0.28171	0.00026029	923.935354790872	8.9375	0.097729	8.9375	8.8931	8.9908	0	315	40	1.11400032671325	0.0260173856244983	1.11400032671325	449.52402233135	0	10.4985964151165						295	12	4	NaN	NaN	NaN	0.00025003	1	28375	58.338	56.496	1	69880			19725	918	16643	17125	19725	19725		
TVTNAVVTVPAYFNDSQR	18	Unmodified	_TVTNAVVTVPAYFNDSQR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.337445	1980.9905	1.0025	0.00066301	0.54386	0.00035968	1.5464	0.0010227	661.337966932276	13.017	0.23053	13.017	12.901	13.132	0	498	55	0.991429299781895	0.0363360970921059	0.991429299781895	599.788262662478	0	21.9823688402226						1066	27	5	NaN	NaN	NaN	0.010031	1	31302	69.327	65.081	1	364130			19726	640	16644	17126	19726	19726		
TVTNAVVTVPAYFNDSQR	18	Unmodified	_TVTNAVVTVPAYFNDSQR_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.502529	1980.9905	2.6197	0.0025974	-0.47723	-0.00047318	2.1424	0.0021242	992.003307521311	13.026	0.45225	13.026	12.795	13.247	0	201	181	1.18983705239708	0.119726041217671	1.18983705239708	479.881471655359	0	48.2875438609492						3195	52	6	NaN	NaN	NaN	1.6132E-14	1	31303	133.13	116.37	1	3072900			19727	640	16644	17126	19727	19727		
TVVAPMLDSR	10	Unmodified	_TVVAPMLDSR_			0	0	0	Q8NBJ5	Q8NBJ5	Q8NBJ5	COLGALT1	Procollagen galactosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.792066	1087.56958	0.45274	0.00024665	0.82507	0.00044949	1.2778	0.00069614	544.79300335408	8.5116	0.10641	8.5116	8.4495	8.5559	0	651	40	0.888155670855968	0.0264122944165538	0.888155670855968	360.248179552809	0	10.7131905966509						251	13	4	NaN	NaN	NaN	0.0010791	1	6408	63.397	48.635	1	64748			19728	2289	16645	17127	19728	19728		
TVVAPSAVAGK	11	Unmodified	_TVVAPSAVAGK_			0	0	0	Q9NX14	Q9NX14	Q9NX14	NDUFB11	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.295299	998.576045	-0.26249	-0.00013132	1.3801	0.00069046	1.1176	0.00055913	500.296011633035	4.6361	0.1862	4.6361	4.5741	4.7603	0	753	31	0.81889964927511	0.0204147391156737	0.81889964927511	332.527024501135	0	8.28972446149055						258	22	3	NaN	NaN	NaN	0.0067696	1	4261	47.561	39.379	1	60906			19729	3090	16646	17128	19729	19729		
TVVPCDFGLSTEEILAADDK	20	Unmodified	_TVVPCDFGLSTEEILAADDK_			0	0	0	Q8N9T8	Q8N9T8	Q8N9T8	KRI1	Protein KRI1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1090.52501	2179.03547	0.32133	0.00035042	1.9037	0.002076	2.225	0.0024264	1091.02870709203	16.626	0.088643	16.626	16.599	16.688	0	120	43	1.2434810169581	0.0277639280700372	1.2434810169581	501.199706291005	0	11.190579031297						280	11	3	NaN	NaN	NaN	0.024105	1	34436	31.767	29.92	1	54237			19730	2279	16647	17129	19730	19730		
TVVSGLVNHVPLEQMQNR	18	Unmodified	_TVVSGLVNHVPLEQMQNR_			0	0	0	Q12904	Q12904	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.358074	2020.05239	0.1277	8.6113E-05	0.20982	0.00014149	0.33751	0.0002276	674.358011920804	11.917	0.15964	11.917	11.802	11.961	0	579	82	0.936845902828289	0.0546741514328335	0.936845902828289	566.690579434919	0	33.0719560837571						663	19	3	NaN	NaN	NaN	0.015146	1	31992	45.183	42.099	1	154190			19731	1604	16648	17130	19731	19731		
TVVSGLVNHVPLEQMQNR	18	Unmodified	_TVVSGLVNHVPLEQMQNR_			0	0	0	Q12904	Q12904	Q12904	AIMP1	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1;Endothelial monocyte-activating polypeptide 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.03347	2020.05239	0.48886	0.00049425	0.67581	0.00068326	1.1647	0.0011775	1011.0339197227	11.917	0.097562	11.917	11.864	11.961	0	138	49	1.23157729878518	0.0317476087598902	1.23157729878518	496.64918062285	0	12.8026262686777						326	12	3	NaN	NaN	NaN	0.011664	1	31993	13.345	12.778	1	60241			19732	1604	16648	17130	19732	19732		
TVVSGLVQFVPK	12	Unmodified	_TVVSGLVQFVPK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.379363	1272.74417	0.93472	0.00059577	-0.87905	-0.00056029	0.055669	3.5482E-05	637.379080987596	14.719	0.18623	14.719	14.622	14.808	0	483	91	1.00151498427745	0.0605183528841725	1.00151498427745	405.48805192737	0	24.5023483443539						1150	22	3	NaN	NaN	NaN	0.0030574	1	11581	57.888	42.009	1	456390			19733	1251	16649	17131	19733	19733		
TVVSGSCAAHSLLITTEGK	19	Unmodified	_TVVSGSCAAHSLLITTEGK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.998765	1929.98298	0.93759	0.00090571	0.0087877	8.4889E-06	0.94638	0.0009142	965.998600198254	9.31	0.097597	9.31	9.2656	9.3632	0	90	46	1.26329880838669	0.0297083716264817	1.26329880838669	509.603525433185	0	11.9840934031025						387	12	4	NaN	NaN	NaN	1.3704E-14	1	30299	153.05	147.95	1	98184			19734	3151	16650	17132	19734	19734		
TVVSGSCAAHSLLITTEGK	19	Unmodified	_TVVSGSCAAHSLLITTEGK_			0	0	0	Q9P258	Q9P258	Q9P258	RCC2	Protein RCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.334935	1929.98298	0.80973	0.00052173	0.44723	0.00028817	1.257	0.0008099	644.335492354109	9.31	0.1419	9.31	9.2568	9.3987	0	552	25	0.955063035883597	0.0161829214477363	0.955063035883597	577.893772546955	0	9.79203379765511						318	17	5	NaN	NaN	NaN	1.5429E-05	1	30301	77.431	63.069	1	120310			19735	3151	16650	17132	19735	19735		
TVVTGIEMFHK	11	Unmodified	_TVVTGIEMFHK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.225158	1260.65364	-2.1308	-0.00089754	0.12589	5.3029E-05	-2.0049	-0.00084451	421.225325024333	9.514	0.22168	9.514	9.4608	9.6824	0	789	34	0.794378096728713	0.022498430910932	0.794378096728713	482.480843389632	0	13.6648555210062						500	26	5	NaN	NaN	NaN	0.01661	1	11234	44.82	40.618	1	237380			19736	1131	16651	17133	19736	19736		
TVVTGIEMFHK	11	Unmodified	_TVVTGIEMFHK_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.334098	1260.65364	1.3681	0.00086374	2.2854	0.0014429	3.6536	0.0023066	631.335761641323	9.514	0.37238	9.514	9.3189	9.6913	0	501	76	0.98941132619024	0.050498238560425	0.98941132619024	400.628811686605	0	20.4475618695716						899	43	4	NaN	NaN	NaN	1.1174E-07	1	11240	117.3	88.653	1	571410			19737	1131	16651	17133	19737	19737		
TVVVNCNPETVSTDFDECDK	20	Unmodified	_TVVVNCNPETVSTDFDECDK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.00157	2327.98859	1.8485	0.0021535	-0.63992	-0.00074551	1.2086	0.001408	1165.50258075438	10.649	0.16846	10.649	10.578	10.746	0	93	82	1.26131825079847	0.0535117422086984	1.26131825079847	508.183109189156	0	21.5597954889894						1160	20	6	NaN	NaN	NaN	2.1747E-22	1	35877	170.92	167.67	1	370460			19738	922	16652	17134	19738	19738		
TVVVNCNPETVSTDFDECDK	20	Unmodified	_TVVVNCNPETVSTDFDECDK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.003474	2327.98859	1.1316	0.00087927	1.3816	0.0010735	2.5132	0.0019528	777.339147109009	10.631	0.088652	10.631	10.587	10.676	0	555	70	0.953040030838688	0.0465098281605225	0.953040030838688	575.965974619313	0	28.1080307637008						314	11	3	NaN	NaN	NaN	1.4196E-06	1	35878	87.251	86	1	57706			19739	922	16652	17134	19739	19739		
TVWDWELMNDIK	12	Unmodified	_TVWDWELMNDIK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.371409	1548.72827	1.577	0.0012228	0.19963	0.00015479	1.7766	0.0013776	775.371983838824	17.53	0.23055	17.53	17.477	17.708	0	375	94	1.07392668217569	0.0622470429048412	1.07392668217569	433.972943595662	0	25.1539820063063						1624	27	6	NaN	NaN	NaN	4.0804E-11	1	19995	171.34	162.08	1	1140900			19740	700	16653	17135	19740	19740		
TVWEISQK	8	Unmodified	_TVWEISQK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.766374	989.518196	0.33277	0.00016498	-0.12391	-6.143E-05	0.20886	0.00010355	495.766590610868	7.3319	0.20393	7.3319	7.2432	7.4472	0	705	61	0.851531465363931	0.040738799082341	0.851531465363931	345.820702053373	0	16.5446852788291						475	24	3	NaN	NaN	NaN	0.068863	1	4043	41.025	28.958	1	100060			19741	828	16654	17136	19741	19741		
TVYFAEEVQCEGNSFHK	17	Unmodified	_TVYFAEEVQCEGNSFHK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.9571	2043.89964	1.4518	0.0014851	-0.30511	-0.00031212	1.1467	0.001173	1023.45820479964	10.214	0.07092	10.214	10.179	10.25	0	138	58	1.23157729878518	0.037718386828598	1.23157729878518	496.609630631932	0	15.2092070627307						377	9	4	NaN	NaN	NaN	9.1769E-19	1	32414	140.01	135.19	1	73022			19742	791	16655	17137	19742	19742		
TVYFAEEVQCEGNSFHK	17	Unmodified	_TVYFAEEVQCEGNSFHK_			0	0	0	P21291	P21291	P21291	CSRP1	Cysteine and glycine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.307157	2043.89964	1.2624	0.00086132	1.0895	0.00074334	2.3518	0.0016047	682.976627546139	10.206	0.28374	10.206	10.143	10.427	0	594	61	0.926715457081489	0.0405189944749071	0.926715457081489	560.518151139592	0	24.5076648884611						1307	33	7	NaN	NaN	NaN	0.00012442	1	32415	94.507	84.486	1	516980			19743	791	16655	17137	19743	19743		
TVYGGGCSEMLMAHAVTQLANR	22	Unmodified	_TVYGGGCSEMLMAHAVTQLANR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	789.373178	2365.09771	1.5932	0.0012577	-0.23643	-0.00018663	1.3568	0.001071	789.70796932235	13.903	0.088663	13.903	13.868	13.957	0	507	61	0.985374541851584	0.0403455444968032	0.985374541851584	595.451804275705	0	24.3804018114419						516	11	5	NaN	NaN	NaN	0.00013957	1	36175	36.053	32.612	1	121090			19744	1461	16656	17138	19744	19744		
TVYSHLFDHVVNR	13	Unmodified	_TVYSHLFDHVVNR_			0	0	0	Q9UM54	Q9UM54	Q9UM54	MYO6	Unconventional myosin-VI	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.607318	1585.80012	0.081687	4.3262E-05	0.70316	0.0003724	0.78485	0.00041566	529.607877649789	9.6736	0.097541	9.6736	9.6381	9.7356	0	678	22	0.869855008346864	0.0142417532513394	0.869855008346864	527.149478584795	0	8.63078642824019						150	12	3	NaN	NaN	NaN	0.048999	1	21133	20.336	18.962	1	37372			19745	3286	16657	17139	19745	19745		
TVYSVFGFSFK	11	Unmodified	_TVYSVFGFSFK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.329339	1280.64412	0.11478	7.3612E-05	-0.48136	-0.00030871	-0.36658	-0.0002351	641.329013401438	17.273	0.22169	17.273	17.193	17.415	0	522	76	0.975277694896658	0.0505261910996371	0.975277694896658	394.839087932813	0	20.455420353496						948	26	4	NaN	NaN	NaN	0.00077909	1	11775	43.168	36.478	1	292560			19746	857	16658	17140	19746	19746		
TVYTGIDHHWK	11	Unmodified	_TVYTGIDHHWK_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	452.894688	1355.66223	-0.49223	-0.00022293	-0.92451	-0.0004187	-1.4167	-0.00064163	452.894301786627	4.911	0.079792	4.911	4.8755	4.9553	0	849	34	0.753417699604308	0.0225643393094115	0.753417699604308	457.255645010318	0	13.694490493886						183	10	4	NaN	NaN	NaN	0.017715	1	14059	50.834	43.684	1	42155			19747	3059	16659	17141	19747	19747		
TVYVSVLPTTADF	13	Unmodified	_TVYVSVLPTTADF_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.869025	1411.7235	0.52258	0.00036939	-1.1661	-0.00082431	-0.64357	-0.00045492	706.868100066906	18.062	0.133	18.062	18.009	18.142	0	483	49	1.00151498427745	0.03226750840465	1.00151498427745	405.059251113009	0	13.0504815153613						455	16	3	NaN	NaN	NaN	0.0020505	1	15815	88.181	78.667	1	133320			19748	1036	16660	17142	19748	19748		
TWDHFWLNEGHTVYLER	17	Unmodified	_TWDHFWLNEGHTVYLER_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	735.016705	2202.02829	0.82677	0.00060769	1.1156	0.00081997	1.9424	0.0014277	735.352009835842	13.478	0.070935	13.478	13.451	13.522	0	525	25	0.973257487423603	0.0161627789282648	0.973257487423603	588.383776536547	0	9.77122398545566						175	9	4	NaN	NaN	NaN	9.2745E-07	1	34703	61.23	58.84	1	36756			19749	614	16661	17143	19749	19749		
TWELSLYELHR	11	Unmodified	_TWELSLYELHR_			0	0	0	Q06587	Q06587	Q06587	RING1	E3 ubiquitin-protein ligase RING1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.917381	1445.73031	-1.4192	-0.00068538	-1.0242	-0.00049461	-2.4435	-0.00118	482.917254462841	13.522	0.079793	13.522	13.487	13.567	0	774	16	0.804600385996946	0.010218022892906	0.804600385996946	488.012114975227	0	6.19751003058957						86	10	3	NaN	NaN	NaN	0.01275	1	16857	49.16	41.602	1	18408			19750	1562	16662	17144	19750	19750		
TWEQQQEVVSR	11	Unmodified	_TWEQQQEVVSR_			0	0	0	Q9UJU6	Q9UJU6	Q9UJU6	DBNL	Drebrin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.341498	1388.66844	2.0955	0.0014571	-2.1904	-0.0015231	-0.094978	-6.6042E-05	695.339974330912	5.6203	0.15967	5.6203	5.5849	5.7445	0	516	31	0.979317271586824	0.0201950922586444	0.979317271586824	396.145254641569	0	8.16915028195876						305	19	4	NaN	NaN	NaN	2.1251E-05	1	15094	83.775	69.012	1	122000			19751	3249	16663	17145	19751	19751		
TWGADVINMTTVPEVVLAK	19	Unmodified	_TWGADVINMTTVPEVVLAK_			0	0	0	Q13126	Q13126	Q13126	MTAP	S-methyl-5-thioadenosine phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.54281	2043.07106	0.38611	0.00039481	6.0492	0.0061855	6.4353	0.0065804	1022.55003649581	18.754	0.10641	18.754	18.71	18.816	0	120	115	1.2434810169581	0.0753180454534117	1.2434810169581	501.410924315183	0	30.3706210817696						433	13	2	NaN	NaN	NaN	1.3929E-10	1	32410	101.43	98.534	1	117590			19752	1630	16664	17146	19752	19752		
TWHAWMDNIR	10	Unmodified	_TWHAWMDNIR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	443.876751	1328.60842	-1.5064	-0.00066864	-1.4654	-0.00065048	-2.9718	-0.0013191	443.876333792065	10.055	0.14186	10.055	10.002	10.143	0	831	28	0.76571780291124	0.0184411604837688	0.76571780291124	464.816041200602	0	11.19439456497						355	17	4	NaN	NaN	NaN	0.0071207	1	13230	67.507	54.912	1	125230			19753	858	16665	17147	19753	19753		
TWIEGLTGLSIGPDFQK	17	Unmodified	_TWIEGLTGLSIGPDFQK_			0	0	0	Q99439	Q99439	Q99439	CNN2	Calponin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.488359	1860.96216	1.5159	0.001412	-0.58617	-0.00054601	0.9297	0.000866	931.487736443612	18.435	0.14193	18.435	18.364	18.506	0	255	61	1.15396378101328	0.0399030432867902	1.15396378101328	465.621976426477	0	16.1007946577942						632	17	5	NaN	NaN	NaN	1.2136E-25	1	28723	222.48	200.34	1	265470			19754	2639	16666	17148	19754	19754		
TWIEVSGSSAK	11	Unmodified	_TWIEVSGSSAK_			0	0	0	P61619;Q9H9S3	P61619	P61619	SEC61A1;SEC61A2	Protein transport protein Sec61 subunit alpha isoform 1;Protein transport protein Sec61 subunit alpha isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.798403	1163.58225	0.79753	0.0004648	-3.2809	-0.0019121	-2.4834	-0.0014473	582.796884328187	7.4915	0.28373	7.4915	7.4028	7.6865	0	615	61	0.912521036363781	0.0405695604489756	0.912521036363781	369.828489196687	0	16.4421187570705						503	33	3	NaN	NaN	NaN	0.00054833	1	8436	76.85	43.454	1	153920			19755	1348	16667	17149	19755	19755		
TWIPEVHDQK	10	Unmodified	_TWIPEVHDQK_			0	0	0	Q9GZR7	Q9GZR7	Q9GZR7	DDX24	ATP-dependent RNA helicase DDX24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	418.215539	1251.62479	-1.3525	-0.00056563	1.7282	0.00072276	0.37572	0.00015713	418.550798124852	6.8974	0.14184	6.8974	6.8264	6.9683	0	831	31	0.76571780291124	0.0204916061947072	0.76571780291124	465.109744139393	0	12.4469428267038						200	17	3	NaN	NaN	NaN	0.01128	1	10961	49.96	39.258	1	38617			19756	2829	16668	17150	19756	19756		
TWNDPSVQQDIK	12	Unmodified	_TWNDPSVQQDIK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.849155	1429.68376	3.6421	0.0026072	4.7943	0.003432	8.4364	0.0060392	715.854030776554	7.6956	0.4878	7.6956	7.5536	8.0414	0	471	91	1.00957851518677	0.0604681893723227	1.00957851518677	408.270728558839	0	24.4531667010611						1948	56	5	NaN	NaN	NaN	0.027093	1	16376	36.514	19.522	1	3488200			19757	638	16669	17151	19757	19757		
TWTDFEHMETIEK	13	Unmodified	_TWTDFEHMETIEK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.252101	1665.73447	-0.36585	-0.00020351	-1.0579	-0.00058846	-1.4237	-0.00079196	556.251659414727	11.633	0.10642	11.633	11.598	11.704	0	660	31	0.882057989648486	0.020329837424522	0.882057989648486	534.32287355775	0	12.3151734683129						271	13	4	NaN	NaN	NaN	0.021112	1	23489	42.061	39.582	1	103800			19758	2129	16670	17152	19758	19758		
TWTLCGTPEYLAPEIILSK	19	Unmodified	_TWTLCGTPEYLAPEIILSK_			0	0	0	P17612;P22694;P22612	P17612;P22694;P22612	P17612	PRKACA;PRKACB;PRKACG	cAMP-dependent protein kinase catalytic subunit alpha;cAMP-dependent protein kinase catalytic subunit beta;cAMP-dependent protein kinase catalytic subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.56902	2191.12349	-0.075099	-8.2351E-05	-1.1097	-0.0012169	-1.1848	-0.0012992	1097.0702918256	18.851	0.070907	18.851	18.816	18.887	0	99	49	1.25735632164274	0.0316997848796292	1.25735632164274	506.77460986615	0	12.7765263026049						280	9	4	NaN	NaN	NaN	2.0274E-10	1	34576	103.23	99.381	1	51840			19759	738;810;807	16671	17153	19759	19759		
TWTLELSPELASMTTR	16	Unmodified	_TWTLELSPELASMTTR_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	918.464026	1834.9135	1.5328	0.0014078	-3.8738	-0.0035579	-2.3409	-0.0021501	918.464082605151	17.468	0.21282	17.468	17.38	17.592	0	264	55	1.14797626962532	0.0359423767491323	1.14797626962532	463.254690493994	0	14.5041975667077						634	25	5	NaN	NaN	NaN	2.3247E-06	1	28105	91.245	66.501	1	142200			19760	2422	16672	17154	19760	19760		
TWTQTYK	7	Unmodified	_TWTQTYK_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.232168	926.449782	-0.0475	-2.2051E-05	-1.025	-0.00047585	-1.0725	-0.0004979	464.231313535829	4.0775	0.24828	4.0775	4.0154	4.2637	0	765	28	0.810730346695089	0.0183873254729269	0.810730346695089	329.557826326549	0	7.47435573309752						310	29	3	NaN	NaN	NaN	0.018941	1	2805	66.087	53.534	1	69971			19761	652	16673	17155	19761	19761		
TWTTADFR	8	Unmodified	_TWTTADFR_			0	0	0	Q9ULX6	Q9ULX6	Q9ULX6	AKAP8L	A-kinase anchor protein 8-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.240524	996.466495	-0.84953	-0.00042412	1.2419	0.00062001	0.39237	0.00019589	499.241151952867	8.2544	0.088737	8.2544	8.2188	8.3076	0	741	28	0.827064408645228	0.0183668788901949	0.827064408645228	335.852115503846	0	7.45837333343763						99	11	2	NaN	NaN	NaN	0.055714	1	4198	33.396	22.036	1	19306			19762	3283	16674	17156	19762	19762		
TYADYESVNECMEGVCK	17	Unmodified	_TYADYESVNECMEGVCK_			0	0	0	P84090	P84090	P84090	ERH	Enhancer of rudimentary homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.91064	2053.80673	3.2838	0.0033754	-1.6292	-0.0016747	1.6545	0.0017007	1028.4110852818	9.8243	0.18619	9.8243	9.78	9.9662	0	228	70	1.17191150690002	0.0458538294871818	1.17191150690002	472.535182795378	0	18.4890647212						1193	22	7	NaN	NaN	NaN	1.0256E-44	1	32588	238.02	233.78	1	764530			19763	1484	16675	17157	19763	19763		
TYADYESVNECMEGVCK	17	Oxidation (M)	_TYADYESVNECM(Oxidation (M))EGVCK_	TYADYESVNECM(1)EGVCK	TYADYESVNECM(89)EGVCK	0	1	0	P84090	P84090	P84090	ERH	Enhancer of rudimentary homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1035.9081	2069.80164	2.1553	0.0022327	-0.85615	-0.00088689	1.2992	0.0013458	1036.40890218849	7.0214	0.079881	7.0214	6.9949	7.0747	0	240	55	1.16393748060522	0.0358880628885423	1.16393748060522	469.295558955162	0	14.4699425989263						368	10	4	NaN	NaN	NaN	2.9534E-06	1	32873	89.382	89.283	1	81048			19764	1484	16675	17158	19764	19764	529	
TYCYLLPTFAFAHK	14	Unmodified	_TYCYLLPTFAFAHK_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.956959	1730.84905	-0.35779	-0.00020679	-1.3562	-0.0007838	-1.7139	-0.00099059	578.290643388381	15.615	0.11525	15.615	15.571	15.686	1.7764E-15	645	28	0.892219381832517	0.0182854326605286	0.892219381832517	540.310745980143	0	11.073303228504						289	14	4	NaN	NaN	NaN	7.5402E-06	1	25350	103.87	93.085	1	80535			19765	3447	16676	17159	19765	19765		
TYCYLLPTFAFAHK	14	Unmodified	_TYCYLLPTFAFAHK_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.431801	1730.84905	1.6547	0.0014337	1.1109	0.00096256	2.7657	0.0023963	866.432668733726	15.606	0.097528	15.606	15.562	15.659	0	243	31	1.16194328902838	0.0199432886001865	1.16194328902838	469.102365703129	0	8.05154946079239						229	12	4	NaN	NaN	NaN	1.256E-05	1	25351	113.46	88.638	1	49091			19766	3447	16676	17159	19766	19766		
TYDAASYICEAAFDEVK	17	Unmodified	_TYDAASYICEAAFDEVK_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.932756	1951.85096	1.9524	0.0019074	0.48852	0.00047725	2.4409	0.0023846	977.434995184019	15.579	0.12415	15.579	15.526	15.65	1.7764E-15	252	34	1.15595906938629	0.0219451580911374	1.15595906938629	466.26632864427	0	8.85177387820931						308	15	4	NaN	NaN	NaN	1.1026E-14	1	30743	135.13	131.69	1	80410			19767	1042	16677	17160	19767	19767		
TYDATTHFETTCDDIK	16	Unmodified	_TYDATTHFETTCDDIK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.943884	1916.80982	0.62032	0.00039697	1.0831	0.00069313	1.7034	0.0010901	640.278895560276	7.0747	0.18629	7.0747	7.0303	7.2166	0	672	103	0.873923798053065	0.0691407234567107	0.873923798053065	528.823596162978	0	41.8380253531757						1232	22	6	NaN	NaN	NaN	7.7465E-09	1	29981	156.73	142.93	1	589930			19768	1161	16678	17161	19768	19768		
TYDATTHFETTCDDIK	16	Unmodified	_TYDATTHFETTCDDIK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.412188	1916.80982	2.3445	0.0022494	-0.46032	-0.00044164	1.8842	0.0018077	959.913237536246	7.0747	0.17743	7.0747	7.0303	7.2077	0	231	82	1.16991841121525	0.0538506199508257	1.16991841121525	471.957856491732	0	21.7239278560823						1097	21	5	NaN	NaN	NaN	8.7884E-18	1	29983	156.02	148.82	1	473420			19769	1161	16678	17161	19769	19769		
TYDLLFK	7	Unmodified	_TYDLLFK_			0	0	0	P61026	P61026	P61026	RAB10	Ras-related protein Rab-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.247286	898.48002	-2.1094	-0.00094975	-0.94003	-0.00042325	-3.0494	-0.001373	450.246798477891	11.873	0.15962	11.873	11.82	11.979	0	780	34	0.800512323802183	0.0224859096742921	0.800512323802183	325.552227543834	0	9.14456625482779						355	19	3	NaN	NaN	NaN	0.0086281	1	2294	80.294	66.646	1	114880			19770	1325	16679	17162	19770	19770		
TYDLPGNFLTQALTQR	16	Unmodified	_TYDLPGNFLTQALTQR_			0	0	0	O94874	O94874	O94874	UFL1	E3 UFM1-protein ligase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.475783	1836.93701	1.1837	0.0010884	0.60288	0.00055434	1.7866	0.0016427	919.476492978199	18.027	0.12415	18.027	17.982	18.107	0	252	37	1.15595906938629	0.0239418187322806	1.15595906938629	466.472201122826	0	9.66140859023659						352	15	4	NaN	NaN	NaN	5.2838E-05	1	28162	100.69	83.278	1	86622			19771	391	16680	17163	19771	19771		
TYDRDNSGMIDK	12	Unmodified	_TYDRDNSGMIDK_			0	0	1	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.213757	1413.61944	-0.23406	-0.00011053	0.26572	0.00012548	0.031659	1.495E-05	472.213898102909	3.173	0.10642	3.173	3.1552	3.2617	-4.4409E-16	855	22	0.749315378969369	0.0143591237595029	0.749315378969369	454.57794010111	0	8.71107291195545						144	13	3	NaN	NaN	NaN	0.0079378	1	15868	36.514	32.906	1	27897			19772	319	16681	17164	19772	19772		
TYDSYLGDDYVR	12	Unmodified	_TYDSYLGDDYVR_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.825346	1465.63614	2.1104	0.0015487	0.97075	0.00071236	3.0812	0.002261	733.825652823608	9.7356	0.19509	9.7356	9.6913	9.8864	0	447	37	1.02569221487577	0.0241572026210712	1.02569221487577	414.68956878654	0	9.76680898297974						604	23	5	NaN	NaN	NaN	2.2684E-07	1	17433	101.82	89.222	1	294120		+	19773	37	16682	17165	19773	19773		
TYEAALETIQNMSK	14	Unmodified	_TYEAALETIQNMSK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.890163	1597.76577	1.9461	0.0015566	0.84638	0.00067701	2.7924	0.0022337	799.890865330955	13.487	0.13301	13.487	13.451	13.584	0	258	43	1.15196821829984	0.0279474898102239	1.15196821829984	465.382853120432	0	11.290487305832						385	16	4	NaN	NaN	NaN	7.0485E-13	1	21506	188.6	166.6	1	112800			19774	63	16683	17166	19774	19774		
TYEDMTLEELEDHEDEFNEEDER	23	Unmodified	_TYEDMTLEELEDHEDEFNEEDER_			0	0	0	Q9H2J4	Q9H2J4	Q9H2J4	PDCL3	Phosducin-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	973.054055	2916.14034	1.3624	0.0013257	1.4298	0.0013913	2.7922	0.002717	973.389432491027	14.036	0.0532	14.036	14.01	14.063	0	474	28	1.00756305028564	0.0181391858417761	1.00756305028564	608.187872490731	0	10.9492233192715						154	7	4	NaN	NaN	NaN	7.1413E-05	1	38094	34.417	34.417	1	27896			19775	2869	16684	17167	19775	19775		
TYEEGLK	7	Unmodified	_TYEEGLK_			0	0	0	P31948	P31948	P31948	STIP1	Stress-induced-phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	420.210901	838.407249	-0.266	-0.00011177	0.84227	0.00035393	0.57627	0.00024216	420.211300055701	3.0932	0.31921	3.0932	3.04	3.3592	0	813	31	0.778007628350577	0.0204744871478547	0.778007628350577	316.740995985127	0	8.33553453099819						254	37	2	NaN	NaN	NaN	0.059248	1	1410	33.813	4.5026	1	65394			19776	934	16685	17168	19776	19776		
TYEGMMHSSCQQEMMDVK	18	Unmodified	_TYEGMMHSSCQQEMMDVK_			0	0	0	O75608	O75608	O75608	LYPLA1	Acyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.4329	2190.85125	1.2861	0.0014101	0.18893	0.00020715	1.475	0.0016173	1096.93473872634	8.0591	0.026618	8.0591	8.0414	8.068	0	132	22	1.23554629282893	0.0138867195400809	1.23554629282893	497.984513071719	0	5.59701510859401						43	4	2	NaN	NaN	NaN	0.00012334	1	34569	33.456	32.649	1	6965.4			19777	347	16686	17169	19777	19777		
TYEGMMHSSCQQEMMDVK	18	Unmodified	_TYEGMMHSSCQQEMMDVK_			0	0	0	O75608	O75608	O75608	LYPLA1	Acyl-protein thioesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.291027	2190.85125	0.56292	0.00041166	1.1074	0.0008098	1.6703	0.0012215	731.627080407472	8.0502	0.071021	8.0502	8.0237	8.0947	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	546.775654975982	0	13.5002195210667						252	9	5	NaN	NaN	NaN	7.1361E-07	1	34570	59.997	50.841	1	54943			19778	347	16686	17169	19778	19778		
TYEHFNAMGK	10	Unmodified	_TYEHFNAMGK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.850091	1196.52844	-1.1613	-0.00046436	0.91174	0.00036456	-0.2496	-9.9804E-05	399.850618923902	4.3879	0.10639	4.3879	4.3524	4.4588	0	840	22	0.759569036796863	0.0143491209396079	0.759569036796863	461.606237339129	0	8.72026557847693						142	13	3	NaN	NaN	NaN	0.029308	1	9329	55.235	51.032	1	36954			19779	728	16687	17170	19779	19779		
TYEHFNAMGK	10	Unmodified	_TYEHFNAMGK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.271498	1196.52844	2.0012	0.0011993	1.7142	0.0010273	3.7154	0.0022265	599.272165360849	4.2549	0.27488	4.2549	4.2105	4.4854	0	552	58	0.955063035883597	0.0384584049101124	0.955063035883597	386.945102255083	0	15.5814756318603						369	32	4	NaN	NaN	NaN	4.2182E-05	1	9331	112.8	33.986	1	129710			19780	728	16687	17170	19780	19780		
TYEIWHR	7	Unmodified	_TYEIWHR_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.751059	1003.48756	-0.035436	-1.7816E-05	6.0043	0.0030187	5.9688	0.0030008	503.254073272752	6.2411	0.17738	6.2411	6.1702	6.3476	0	705	46	0.851531465363931	0.0305604601468165	0.851531465363931	345.754662504346	0	12.4087271155906						340	21	3	NaN	NaN	NaN	0.009011	1	4369	80.294	63.836	1	73330			19781	1776	16688	17171	19781	19781		
TYEQVLENLESK	12	Unmodified	_TYEQVLENLESK_			0	0	0	Q16762	Q16762	Q16762	TST	Thiosulfate sulfurtransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.864471	1451.71439	1.8228	0.0013249	-0.81306	-0.00059098	1.0098	0.00073395	726.86494563283	12.955	0.29263	12.955	12.786	13.079	0	465	43	1.01360860968299	0.0282028744341156	1.01360860968299	409.840899077966	0	11.4035055584975						361	34	4	NaN	NaN	NaN	0.00063019	1	17029	79.311	67.353	1	96723			19782	1905	16689	17172	19782	19782		
TYFGGGTASAYLAGEDFYIPR	21	Unmodified	_TYFGGGTASAYLAGEDFYIPR_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1128.53403	2255.0535	0.61058	0.00068906	-3.1601	-0.0035662	-2.5495	-0.0028772	1129.53228900614	16.626	0.23056	16.626	16.537	16.768	0	87	79	1.26527909472281	0.0514980648775307	1.26527909472281	509.876775861982	0	20.7524706544201						608	27	3	NaN	NaN	NaN	0.00023805	1	35235	58.794	58.319	1	91578			19783	2516	16690	17173	19783	19783		
TYFPHFDLSHGSAQVK	16	Unmodified	_TYFPHFDLSHGSAQVK_			0	0	0	CON__P01966;P69905	CON__P01966;P69905	CON__P01966	HBA1	Hemoglobin subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	459.228422	1832.88458	-1.6774	-0.0007703	1.0734	0.00049293	-0.60399	-0.00027737	459.479771258606	10.214	0.22168	10.214	10.161	10.383	0	792	112	0.792332785124922	0.0755609174677098	0.792332785124922	639.476436528831	0	60.9837522190654						1251	26	6	NaN	NaN	NaN	0.042055	1	28047	31.04	26.513	1	975150		+	19784	25;1453	16691	17174	19784	19784		
TYGADLASVDFQHASEDAR	19	Unmodified	_TYGADLASVDFQHASEDAR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.980097	2051.91846	1.3394	0.00091744	-0.081684	-5.5952E-05	1.2577	0.00086148	685.314309330218	10.356	0.15959	10.356	10.312	10.472	-1.7764E-15	597	61	0.924688525662974	0.0405414565630254	0.924688525662974	559.277445680666	0	24.52060519999						862	19	5	NaN	NaN	NaN	1.9742E-20	1	32564	185.57	180.23	1	430090			19785	916	16692	17175	19785	19785		
TYGADLASVDFQHASEDAR	19	Unmodified	_TYGADLASVDFQHASEDAR_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.96651	2051.91846	1.4139	0.001452	1.2658	0.0013	2.6797	0.002752	1026.96748502696	10.365	0.026595	10.365	10.347	10.374	0	138	22	1.23157729878518	0.0138924322508014	1.23157729878518	496.596530926736	0	5.60170577087428						48	4	2	NaN	NaN	NaN	2.56E-05	1	32565	84.58	81.495	1	8245.6			19786	916	16692	17175	19786	19786		
TYGEIFEK	8	Unmodified	_TYGEIFEK_			0	0	0	O95298	O95298	O95298	NDUFC2	NADH dehydrogenase [ubiquinone] 1 subunit C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.745108	985.475663	-0.15302	-7.5551E-05	1.8692	0.0009229	1.7162	0.00084735	493.746085953781	7.527	0.16846	7.527	7.4649	7.6334	0	699	31	0.85560534332665	0.0203665630059481	0.85560534332665	347.494701895204	0	8.27165561269749						279	20	3	NaN	NaN	NaN	0.044662	1	3958	47.349	37.27	1	73153			19787	418	16693	17176	19787	19787		
TYGEPESAGPSR	12	Unmodified	_TYGEPESAGPSR_			0	0	0	P50402	P50402	P50402	EMD	Emerin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.786024	1249.55749	1.8155	0.0011361	-0.27357	-0.00017119	1.5419	0.00096491	625.785798377288	3.2794	0.15073	3.2794	3.2439	3.3947	0	636	43	0.898312834727904	0.0284262615360348	0.898312834727904	363.776549104251	0	11.5113654461431						303	18	3	NaN	NaN	NaN	0.00042983	1	10897	87.942	73.947	1	65019			19788	1162	16694	17177	19788	19788		
TYGGCEGPDAMYVK	14	Unmodified	_TYGGCEGPDAMYVK_			0	0	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.328884	1546.64321	2.2009	0.0017042	-1.5551	-0.0012042	0.64572	0.0005	774.328516202636	7.1457	0.18612	7.1457	7.066	7.2521	0	462	70	1.01562323939346	0.0463173150504996	1.01562323939346	410.417476052914	0	18.7170151324287						1098	22	5	NaN	NaN	NaN	3.871E-17	1	19932	163.59	154.07	1	669140			19789	1835	16695	17178	19789	19789		
TYGGCEGPDAMYVK	14	Oxidation (M)	_TYGGCEGPDAM(Oxidation (M))YVK_	TYGGCEGPDAM(1)YVK	TYGGCEGPDAM(120)YVK	0	1	0	Q15369	Q15369	Q15369	TCEB1	Transcription elongation factor B polypeptide 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.326341	1562.63813	2.1675	0.0016957	-0.12453	-9.7425E-05	2.043	0.0015983	782.326393651636	5.5494	0.15957	5.5494	5.4785	5.6381	0	456	46	1.01965166402748	0.0302027620184235	1.01965166402748	412.007951873948	0	12.2039501911817						415	19	4	NaN	NaN	NaN	1.2868E-05	1	20419	119.94	116.83	1	94854			19790	1835	16695	17179	19790	19790	576	
TYHALCNEEFTIFNR	15	Unmodified	_TYHALCNEEFTIFNR_			0	0	0	Q8N3U4	Q8N3U4	Q8N3U4	STAG2	Cohesin subunit SA-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.964954	1913.87303	0.046884	2.9957E-05	0.7414	0.00047373	0.78828	0.00050368	639.299826872748	12.165	0.10641	12.165	12.121	12.227	0	639	34	0.896281965493857	0.0223364666145487	0.896281965493857	542.358814409971	0	13.5162594111769						292	13	4	NaN	NaN	NaN	0.0011803	1	29923	64.266	59.184	1	69556			19791	2249	16696	17180	19791	19791		
TYINPFVSFLDQR	13	Unmodified	_TYINPFVSFLDQR_			0	0	0	O95486	O95486	O95486	SEC24A	Protein transport protein Sec24A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.411923	1598.80929	0.99244	0.00079436	-0.65475	-0.00052407	0.33769	0.00027029	800.411478406856	18.745	0.1153	18.745	18.701	18.816	0	363	28	1.08195024817156	0.0180492926905949	1.08195024817156	437.093895144759	0	7.29168061107458						265	14	4	NaN	NaN	NaN	8.6636E-05	1	21541	82.437	0	1	69448			19792	439	16697	17181	19792	19792		
TYINPFVSFLDQR	13	Unmodified	_TYINPFVSFLDQR_			0	0	0	O95486	O95486	O95486	SEC24A	Protein transport protein Sec24A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.411923	1598.80929	0.66247	0.00053025	1.082	0.00086603	1.7445	0.0013963	800.412206726206	18.151	0.11526	18.151	18.115	18.231	0	366	31	1.07994477139643	0.0200589169906749	1.07994477139643	436.283701971456	0	8.10354269405252						253	14	4	NaN	NaN	NaN	0.00030813	1	21543	73.655	0	1	46241			19793	439	16697	17181	19793	19793		
TYITDPVSAPCAPPLQPK	18	Unmodified	_TYITDPVSAPCAPPLQPK_			0	0	0	Q93052	Q93052	Q93052	LPP	Lipoma-preferred partner	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.000776	1953.987	1.6155	0.00158	-2.3285	-0.0022773	-0.71302	-0.00069733	978.500796956379	11.828	0.1419	11.828	11.784	11.926	0	249	73	1.15795408347545	0.0478376153848137	1.15795408347545	467.067439717825	0	19.295577310743						540	17	3	NaN	NaN	NaN	0.0019521	1	30783	71.219	60.01	1	136170			19794	2455	16698	17182	19794	19794		
TYLQALPYFDR	11	Unmodified	_TYLQALPYFDR_			0	0	0	O75306	O75306	O75306	NDUFS2	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.856252	1385.69795	0.75007	0.00052044	2.3749	0.0016478	3.1249	0.0021683	693.857899033658	14.719	0.31039	14.719	14.498	14.808	0	444	43	1.02770517576159	0.0281911902363581	1.02770517576159	415.727492869766	0	11.4039056281785						535	36	3	NaN	NaN	NaN	0.019519	1	15007	46.033	27.696	1	174350			19795	316	16699	17183	19795	19795		
TYLSEGPYYVK	11	Unmodified	_TYLSEGPYYVK_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.329536	1318.64452	1.5796	0.0010431	0.66866	0.00044154	2.2483	0.0014846	660.329933889624	9.1238	0.15084	9.1238	9.0794	9.2303	0	453	55	1.02166545906632	0.0362608440937691	1.02166545906632	413.491864319898	0	14.6756101942099						425	18	4	NaN	NaN	NaN	0.00018129	1	12927	65.404	57.221	1	176110			19796	1881	16700	17184	19796	19796		
TYNASITLQQQLK	13	Unmodified	_TYNASITLQQQLK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.40938	1506.80421	1.2283	0.00092667	0.80905	0.00061035	2.0374	0.001537	754.410039827408	9.381	0.11524	9.381	9.3455	9.4608	0	417	43	1.04580932352505	0.0281367598695683	1.04580932352505	422.714906214409	0	11.3728454526988						296	14	3	NaN	NaN	NaN	0.0061234	1	18711	54.27	46.623	1	84850			19797	651	16701	17185	19797	19797		
TYNFLPEFLVSTQK	14	Unmodified	_TYNFLPEFLVSTQK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	562.962768	1685.86647	-1.2111	-0.00068178	0.83795	0.00047173	-0.37311	-0.00021005	562.96311822199	17.974	0.070929	17.974	17.947	18.018	0	687	22	0.863749705078866	0.0142496650202144	0.863749705078866	523.180795774961	0	8.63114747358634						139	9	3	NaN	NaN	NaN	0.020349	1	24078	44.598	35.336	1	31341			19798	916	16702	17186	19798	19798		
TYNFLPEFLVSTQK	14	Unmodified	_TYNFLPEFLVSTQK_			0	0	0	P30740	P30740	P30740	SERPINB1	Leukocyte elastase inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	843.940513	1685.86647	1.658	0.0013992	0.63499	0.00053589	2.293	0.0019351	843.940997522168	17.982	0.1862	17.982	17.912	18.098	0	348	55	1.09197348738011	0.0360662768322055	1.09197348738011	440.947446585557	0	14.5638450574148						833	22	5	NaN	NaN	NaN	1.4841E-05	1	24079	104.04	84.485	1	463450			19799	916	16702	17186	19799	19799		
TYQELLVNQNPIAQPLASR	19	Unmodified	_TYQELLVNQNPIAQPLASR_			0	0	0	Q9NX24	Q9NX24	Q9NX24	NHP2	H/ACA ribonucleoprotein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1078.07893	2154.14332	1.0757	0.0011597	-0.006191	-6.6744E-06	1.0695	0.001153	1078.0787966391	14.125	0.12414	14.125	14.072	14.196	0	108	76	1.25141139212444	0.0495682766299881	1.25141139212444	504.433064057719	0	19.9805418249214						529	15	3	NaN	NaN	NaN	6.4729E-07	1	34101	85.742	76.989	1	104850			19800	3093	16703	17187	19800	19800		
TYQGLESLEEVCVYHSGVPIFHEGMK	26	Unmodified	_TYQGLESLEEVCVYHSGVPIFHEGMK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	753.108484	3008.40483	0.73717	0.00055517	1.7831	0.0013429	2.5203	0.001898	753.360944560392	15.092	0.14189	15.092	15.056	15.198	-1.7764E-15	504	37	0.987393073566096	0.0242240595168645	0.987393073566096	794.566809034386	0	19.4933853471938						482	17	6	NaN	NaN	NaN	6.5105E-07	1	38239	85.562	75.31	1	142090			19801	3213	16704	17188	19801	19801		
TYQGLESLEEVCVYHSGVPIFHEGMK	26	Oxidation (M)	_TYQGLESLEEVCVYHSGVPIFHEGM(Oxidation (M))K_	TYQGLESLEEVCVYHSGVPIFHEGM(1)K	TYQGLESLEEVCVYHSGVPIFHEGM(77)K	0	1	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	757.107212	3024.39974	0.69038	0.00052269	1.4501	0.0010979	2.1405	0.0016206	757.358787088999	14.595	0.070912	14.595	14.56	14.631	0	495	22	0.993446994398923	0.0141219107113567	0.993446994398923	799.419020016112	0	11.3637910077512						158	9	5	NaN	NaN	NaN	4.9679E-14	1	38266	77.229	67.348	1	28681			19802	3213	16704	17189	19802	19802	639	
TYSECEDGTYSPEISWHHR	19	Unmodified	_TYSECEDGTYSPEISWHHR_			0	0	0	P48651	P48651	P48651	PTDSS1	Phosphatidylserine synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.330801	2352.97057	1.5255	0.001198	1.1403	0.00089553	2.6658	0.0020935	785.66581766618	7.4117	0.079791	7.4117	7.3674	7.4472	0	573	43	0.940896116921038	0.0283554323651288	0.940896116921038	568.591047914592	0	17.1354145400443						277	10	4	NaN	NaN	NaN	6.6453E-20	1	36073	95.345	94.471	1	48394			19803	1114	16705	17190	19803	19803		
TYSTSFTPMYHAVTK	15	Unmodified	_TYSTSFTPMYHAVTK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.611629	1732.81306	-0.29324	-0.00016967	0.46643	0.00026988	0.17319	0.00010021	578.946245891737	8.8753	0.13313	8.8753	8.8221	8.9553	0	705	37	0.851531465363931	0.0244500640244978	0.851531465363931	515.666287363731	0	14.8063509736893						440	16	5	NaN	NaN	NaN	0.022815	1	25400	25.588	24.536	1	139330			19804	475	16706	17191	19804	19804		
TYSTSFTPMYHAVTK	15	Unmodified	_TYSTSFTPMYHAVTK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.413805	1732.81306	2.438	0.0021148	-0.7887	-0.00068413	1.6493	0.0014306	867.412932129325	8.8753	0.11538	8.8753	8.831	8.9464	0	273	31	1.14198628764525	0.0199707283140815	1.14198628764525	461.041135221947	0	8.06255499977891						270	14	4	NaN	NaN	NaN	3.1592E-06	1	25401	112.73	108.74	1	65398			19805	475	16706	17191	19805	19805		
TYSVEYLPK	9	Unmodified	_TYSVEYLPK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.28714	1098.55973	1.0012	0.00055092	0.85486	0.00047042	1.856	0.0010213	550.287454680561	8.6091	0.13312	8.6091	8.5736	8.7068	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	382.41380339496	0	9.8529743437424						262	16	3	NaN	NaN	NaN	0.010947	1	6668	60.589	52.407	1	57365			19806	326	16707	17192	19806	19806		
TYTAYVDLEK	10	Unmodified	_TYTAYVDLEK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.800611	1201.58667	0.90969	0.00054745	0.53256	0.00032049	1.4423	0.00086795	601.801778495996	8.7245	0.29296	8.7245	8.68	8.973	0	570	37	0.942920803299286	0.0242911943445451	0.942920803299286	382.00733078293	0	9.84113859893677						356	34	3	NaN	NaN	NaN	0.0032022	1	9504	53.517	45.87	1	103450			19807	1251	16708	17193	19807	19807		
TYTDELTPIESAVSVFK	17	Unmodified	_TYTDELTPIESAVSVFK_			0	0	0	O75489	O75489	O75489	NDUFS3	NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	950.482939	1898.95133	1.7116	0.0016268	-0.085095	-8.0881E-05	1.6265	0.0015459	950.984306731361	18.461	0.21284	18.461	18.337	18.55	0	225	43	1.17390432875292	0.0279014290845747	1.17390432875292	473.597824661515	0	11.2565017401715						723	25	5	NaN	NaN	NaN	6.4436E-05	1	29581	75.5	67.126	1	241100			19808	338	16709	17194	19808	19808		
TYTIANQFPLNK	12	Unmodified	_TYTIANQFPLNK_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.374809	1408.73507	2.0514	0.001447	1.5201	0.0010723	3.5715	0.0025193	705.375189217399	11.279	0.24832	11.279	11.137	11.385	0	420	49	1.04379886199097	0.0321740540769211	1.04379886199097	422.169495168754	0	13.0129516919358						600	29	4	NaN	NaN	NaN	7.2017E-05	1	15725	109.88	95.115	1	158390			19809	3036	16710	17195	19809	19809		
TYVGPMTESLFPGYHTK	17	Unmodified	_TYVGPMTESLFPGYHTK_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.313472	1926.91859	0.34548	0.00022225	0.49684	0.00031963	0.84232	0.00054188	643.648033757531	12.618	0.13298	12.618	12.538	12.671	0	624	94	0.906433495720521	0.0629395582184972	0.906433495720521	548.475014960146	0	38.0841785949611						878	16	3	NaN	NaN	NaN	0.0021113	1	30209	61.042	59.568	1	199060			19810	268	16711	17196	19810	19810		
TYVPALEQSADGHK	14	Unmodified	_TYVPALEQSADGHK_			0	0	0	P98175	P98175	P98175	RBM10	RNA-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.375537	1514.73652	2.3822	0.0018066	-1.6836	-0.0012768	0.69866	0.00052985	758.374314378181	6.1879	0.15961	6.1879	6.0904	6.25	0	387	52	1.06589869032374	0.0341354478713756	1.06589869032374	430.814478524765	0	13.7968507771122						400	19	3	NaN	NaN	NaN	0.00015475	1	18961	57.003	53.658	1	84570			19811	1490	16712	17197	19811	19811		
TYVTPPGTGFLPGDTAR	17	Unmodified	_TYVTPPGTGFLPGDTAR_			0	0	0	Q9NPF4	Q9NPF4	Q9NPF4	OSGEP	Probable tRNA N6-adenosine threonylcarbamoyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.443951	1748.87335	2.051	0.0017956	1.0239	0.00089639	3.0749	0.0026919	875.446532315581	12.174	0.1153	12.174	12.112	12.227	0	321	46	1.10999792833052	0.0300159293461491	1.10999792833052	448.094170941118	0	12.1171063766029						420	14	4	NaN	NaN	NaN	1.9718E-06	1	25859	66.619	60.415	1	99139			19812	2988	16713	17198	19812	19812		
TYYMSGGLQPVPIVFR	16	Unmodified	_TYYMSGGLQPVPIVFR_			0	0	0	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.47674	1826.93893	1.1812	0.0010801	0.31227	0.00028556	1.4934	0.0013657	914.978868328304	16.386	0.23941	16.386	16.236	16.475	0	264	58	1.14797626962532	0.037931351551258	1.14797626962532	463.269846013213	0	15.3073298265649						528	28	3	NaN	NaN	NaN	2.7002E-17	1	27902	150.44	144.42	1	191700			19813	644	16714	17199	19813	19813		
TYYYNTETK	9	Unmodified	_TYYYNTETK_			0	0	0	O75400	O75400	O75400	PRPF40A	Pre-mRNA-processing factor 40 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.769311	1181.52407	2.3088	0.0013663	0.54216	0.00032084	2.851	0.0016871	591.769451535952	4.0953	0.13304	4.0953	4.0598	4.1928	0	564	28	0.946969335010767	0.0182171330553085	0.946969335010767	383.721473281462	0	7.38176504402639						230	16	3	NaN	NaN	NaN	0.0073524	1	8907	56.378	50.115	1	53264			19814	332	16715	17200	19814	19814		
VAAALENTHLLEVVNQCLSAR	21	Unmodified	_VAAALENTHLLEVVNQCLSAR_			0	0	0	Q9Y3D0	Q9Y3D0	Q9Y3D0	FAM96B	Mitotic spindle-associated MMXD complex subunit MIP18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.074114	2307.20051	0.78189	0.00060211	-1.5383	-0.0011846	-0.7564	-0.00058248	770.405704186075	15.721	0.079799	15.721	15.677	15.757	1.7764E-15	444	28	1.02770517576159	0.0181141482765854	1.02770517576159	621.12275288432	0	10.9477989496061						172	10	4	NaN	NaN	NaN	8.1573E-06	1	35695	91.1	87.25	1	34413			19815	3386	16716	17201	19815	19815		
VAACELLHSMVMFMLGK	17	Unmodified	_VAACELLHSMVMFMLGK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.322039	1935.94429	-0.26697	-0.00017255	-0.58116	-0.00037561	-0.84813	-0.00054816	646.656655527239	20.128	0.0088684	20.128	20.128	20.137	0	606	16	0.918606045818476	0.0101388716490922	0.918606045818476	555.822013504552	0	6.13473869491202						28	2	3	NaN	NaN	NaN	0.071123	1	30436	12.17	11.363	1	6972.8			19816	1465	16717	17202	19816	19816		
VAAETQSPSLFGSTK	15	Unmodified	_VAAETQSPSLFGSTK_			0	0	0	Q9UKX7	Q9UKX7	Q9UKX7	NUP50	Nuclear pore complex protein Nup50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.89102	1521.76749	2.1486	0.001637	-0.99848	-0.00076074	1.1501	0.00087628	761.888759714629	8.1922	0.15966	8.1922	8.1213	8.281	0	435	43	1.03374239103424	0.0281756225975058	1.03374239103424	417.800075759487	0	11.3875346100795						447	19	4	NaN	NaN	NaN	2.5012E-06	1	19180	110.58	54.38	1	129830			19817	3270	16718	17203	19817	19817		
VAAIEALNDGELQK	14	Unmodified	_VAAIEALNDGELQK_			0	0	0	P50502;Q8IZP2	P50502	P50502	ST13;ST13P4	Hsc70-interacting protein;Putative protein FAM10A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.893563	1469.77257	2.2407	0.0016489	-1.7273	-0.0012711	0.51345	0.00037785	735.893372941749	10.108	0.2926	10.108	9.9839	10.277	0	426	136	1.03977710643793	0.0905459446107545	1.03977710643793	420.373066766696	0	36.6069575716153						1764	34	4	NaN	NaN	NaN	1.1871E-05	1	17586	96.946	82.49	1	979480			19818	1165	16719	17204	19818	19818		
VAALQNLVK	9	Unmodified	_VAALQNLVK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.300384	954.586216	-0.55157	-0.00026381	-0.81928	-0.00039186	-1.3708	-0.00065568	478.299967042023	8.8399	0.19524	8.8399	8.7866	8.9819	0	744	34	0.82502364452135	0.0224484086173647	0.82502364452135	335.223496963448	0	9.12123438879541						345	23	3	NaN	NaN	NaN	0.021203	1	3329	60.709	38.322	1	203670			19819	1780	16720	17205	19819	19819		
VAALTGLPFVTAPNK	15	Unmodified	_VAALTGLPFVTAPNK_			0	0	0	P07954	P07954	P07954	FH	Fumarate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.935034	1497.85551	2.0189	0.001514	1.2834	0.00096245	3.3023	0.0024765	749.936064562782	15.074	0.24829	15.074	14.985	15.234	0	348	118	1.09197348738011	0.0782353003594853	1.09197348738011	441.39840531813	0	31.6243363207599						1692	29	5	NaN	NaN	NaN	3.9177E-08	1	18479	138.71	121.24	1	1199300			19820	571	16721	17206	19820	19820		
VAASCGAIQYIPTELDQVR	19	Unmodified	_VAASCGAIQYIPTELDQVR_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.0306	2090.04664	2.3186	0.0024253	-1.2296	-0.0012862	1.089	0.0011391	1046.53130540132	14.524	0.16848	14.524	14.453	14.622	0	162	58	1.21569043230068	0.0377701637614405	1.21569043230068	490.130530023303	0	15.2278161377213						767	20	6	NaN	NaN	NaN	6.4081E-07	1	33188	65.212	61.141	1	236320			19821	2115	16722	17207	19821	19821		
VAASNIVQMK	10	Unmodified	_VAASNIVQMK_			0	0	0	P49721	P49721	P49721	PSMB2	Proteasome subunit beta type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.794609	1059.57467	1.0851	0.00057594	-0.81444	-0.0004323	0.27062	0.00014364	530.794472500976	6.4983	0.19509	6.4983	6.454	6.6491	0	642	34	0.894250814548268	0.0223426636256	0.894250814548268	362.840321122514	0	9.06548712369937						591	23	5	NaN	NaN	NaN	0.0002709	1	5723	91.783	66.932	1	402960			19822	1143	16723	17208	19822	19822		
VAASNIVQMK	10	Oxidation (M)	_VAASNIVQM(Oxidation (M))K_	VAASNIVQM(1)K	VAASNIVQM(59)K	0	1	0	P49721	P49721	P49721	PSMB2	Proteasome subunit beta type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.792066	1075.56958	1.666	0.00089762	-0.70394	-0.00037928	0.96204	0.00051834	538.791741329079	4.2105	0.14189	4.2105	4.1307	4.2726	0	639	22	0.896281965493857	0.014218057439808	0.896281965493857	363.595058628368	0	5.76784497226828						168	17	2	NaN	NaN	NaN	0.032627	1	6106	58.916	44.38	1	46407			19823	1143	16723	17209	19823	19823	413	
VAASTFSSDSK	11	Unmodified	_VAASTFSSDSK_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.266936	1098.51932	0.80648	0.00044378	0.42512	0.00023393	1.2316	0.00067771	550.266791588853	3.3237	0.15959	3.3237	3.2705	3.4301	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	348.653798287982	0	6.60610723415914						173	19	3	NaN	NaN	NaN	0.045215	1	6662	21.15	18.991	1	30054			19824	3431	16724	17210	19824	19824		
VAASVLNPYVK	11	Unmodified	_VAASVLNPYVK_			0	0	0	P48047	P48047	P48047	ATP5O	ATP synthase subunit O, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.837331	1159.66011	1.163	0.00067554	1.0277	0.00059692	2.1907	0.0012725	580.837770020179	9.1238	0.13303	9.1238	9.0794	9.2125	0	543	52	0.961130371139249	0.0343720622770389	0.961130371139249	389.544398036535	0	13.9309345652168						464	16	4	NaN	NaN	NaN	7.8782E-06	1	8347	105.36	83.315	1	174230			19825	1104	16725	17211	19825	19825		
VACDQLYTLSQTDTSAHPDVQK	22	Unmodified	_VACDQLYTLSQTDTSAHPDVQK_			0	0	0	Q9UPU5	Q9UPU5	Q9UPU5	USP24	Ubiquitin carboxyl-terminal hydrolase 24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	826.391949	2476.15402	1.902	0.0015718	-0.35445	-0.00029291	1.5476	0.0012789	826.726024983428	8.9109	0.044482	8.9109	8.8931	8.9375	0	426	28	1.03977710643793	0.0181041477634616	1.03977710643793	628.162168572421	0	10.9372870866633						119	6	3	NaN	NaN	NaN	0.00077	1	36714	27.236	27.156	1	24468			19826	3316	16726	17212	19826	19826		
VACITEQVLTLVNK	14	Unmodified	_VACITEQVLTLVNK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.964003	1586.87018	-0.6868	-0.00036398	-1.8729	-0.00099258	-2.5597	-0.0013566	530.29733899676	16.067	0.18622	16.067	15.987	16.174	0	693	40	0.85967808974117	0.0264783729728815	0.85967808974117	520.979037009954	0	16.0463287567972						378	22	4	NaN	NaN	NaN	0.026091	1	21183	35.33	33.346	1	94979			19827	518	16727	17213	19827	19827		
VACITEQVLTLVNK	14	Unmodified	_VACITEQVLTLVNK_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.442366	1586.87018	1.977	0.0015706	-1.0115	-0.0008036	0.96546	0.000767	794.441608539089	16.067	0.23055	16.067	15.961	16.191	0	357	76	1.08596037261705	0.0500817189530267	1.08596037261705	438.742281765686	0	20.2336735319782						867	27	5	NaN	NaN	NaN	0.00030517	1	21184	64.266	62.424	1	431920			19828	518	16727	17213	19828	19828		
VACPQCNAEYLIVFPK	16	Unmodified	_VACPQCNAEYLIVFPK_			0	0	0	Q9NX47	Q9NX47	Q9NX47	MARCH5	E3 ubiquitin-protein ligase MARCH5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.970964	1907.92738	0.19378	0.00018506	-0.046308	-4.4223E-05	0.14748	0.00014083	955.472548741166	14.834	0.079815	14.834	14.799	14.879	0	123	58	1.24149774378079	0.0377028745088666	1.24149774378079	500.850496360928	0	15.2102599514138						388	10	4	NaN	NaN	NaN	2.6721E-06	1	29779	71.219	69.377	1	72527			19829	3096	16728	17214	19829	19829		
VADEDDVDNEEAALLHEEATMTIEELLTR	29	Unmodified	_VADEDDVDNEEAALLHEEATMTIEELLTR_			0	0	0	O15355	O15355	O15355	PPM1G	Protein phosphatase 1G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1091.1768	3270.50856	0.99976	0.0010909	1.0937	0.0011934	2.0935	0.0022843	1091.8459978855	20.04	0.03547	20.04	20.031	20.066	0	300	46	1.12400150285141	0.0299994059513333	1.12400150285141	678.123610285684	0	18.0990020196025						189	5	6	NaN	NaN	NaN	0.0001056	1	38527	39.699	39.099	1	47135			19830	166	16729	17215	19830	19830		
VADEMDVMLGQEVGYSIR	18	Unmodified	_VADEMDVMLGQEVGYSIR_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.47681	2010.93906	1.4159	0.001425	1.5632	0.0015733	2.9791	0.0029983	1006.98102794731	15.81	0.19512	15.81	15.739	15.934	0	216	55	1.17988115188462	0.0358437157950102	1.17988115188462	475.816767486437	0	14.4548804403242						380	23	3	NaN	NaN	NaN	9.3385E-05	1	31817	56.08	53.691	1	72699			19831	181	16730	17216	19831	19831		
VADGGGAGGTFQPYLDTLR	19	Unmodified	_VADGGGAGGTFQPYLDTLR_			0	0	0	Q9Y5M8	Q9Y5M8	Q9Y5M8	SRPRB	Signal recognition particle receptor subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.968322	1893.92209	1.7416	0.001651	-0.016234	-1.5389E-05	1.7254	0.0016356	947.968183864345	13.708	0.079823	13.708	13.673	13.753	0	255	40	1.15396378101328	0.0259387539969269	1.15396378101328	465.562013246992	0	10.464885233507						320	10	4	NaN	NaN	NaN	0.001193	1	29470	63.766	60.681	1	78528			19832	3439	16731	17217	19832	19832		
VADGLPLAASMQEDEQSGR	19	Unmodified	_VADGLPLAASMQEDEQSGR_			0	0	0	O75396	O75396	O75396	SEC22B	Vesicle-trafficking protein SEC22b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	987.465286	1972.91602	2.3025	0.0022736	-0.5206	-0.00051407	1.7819	0.0017596	987.464978706789	11.42	0.28382	11.42	11.225	11.509	0	237	67	1.16593139812432	0.0438873183410309	1.16593139812432	470.253306298475	0	17.7010041822742						1061	33	4	NaN	NaN	NaN	5.4145E-07	1	31163	74.643	73.274	1	234200			19833	331	16732	17218	19833	19833		
VADGMVFGALLPCEECSGQLVFK	23	Unmodified	_VADGMVFGALLPCEECSGQLVFK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	843.072506	2526.19569	0.3179	0.00026801	-0.53597	-0.00045186	-0.21807	-0.00018385	843.406636199579	18.922	0.07981	18.922	18.887	18.967	0	540	70	0.963152256458504	0.046458374141941	0.963152256458504	581.806358921282	0	28.0638677007449						281	10	5	NaN	NaN	NaN	0.00021075	1	36951	45.826	43.978	1	50368			19834	611	16733	17219	19834	19834		
VADIGLAAWGR	11	Unmodified	_VADIGLAAWGR_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.811648	1127.60874	0.77041	0.00043514	-0.23082	-0.00013037	0.53959	0.00030477	564.811652932398	12.325	0.26602	12.325	12.245	12.511	0	621	106	0.908462957275599	0.070923047443334	0.908462957275599	368.321373420306	0	28.7545838080413						1066	31	3	NaN	NaN	NaN	9.6828E-05	1	7464	106.93	64.851	1	729380			19835	822	16734	17220	19835	19835		
VADISGDTQK	10	Unmodified	_VADISGDTQK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.261653	1032.50875	1.2909	0.00066771	1.4118	0.00073026	2.7026	0.001398	517.261994257748	2.6409	0.27492	2.6409	2.6055	2.8804	0	729	34	0.835224628594324	0.0224328108600214	0.835224628594324	339.004520648898	0	9.10512457613675						301	32	2	NaN	NaN	NaN	6.7171E-06	1	5057	98.009	74.434	1	94750			19836	2108	16735	17221	19836	19836		
VADLTEQYNEQYGAVR	16	Unmodified	_VADLTEQYNEQYGAVR_			0	0	0	Q9BWF3	Q9BWF3	Q9BWF3	RBM4	RNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.44468	1854.87481	2.409	0.0022366	-1.1384	-0.001057	1.2706	0.0011797	928.442756894914	8.973	0.15961	8.973	8.9198	9.0794	0	303	76	1.12200181823275	0.0499783942568677	1.12200181823275	452.736386108188	0	20.1666674970136						809	19	4	NaN	NaN	NaN	2.0353E-24	1	28594	158.02	143.62	1	342270			19837	2778	16736	17222	19837	19837		
VADMALHYANK	11	Unmodified	_VADMALHYANK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	411.541257	1231.60194	-1.795	-0.00073871	3.4327	0.0014127	1.6377	0.000674	411.541914617994	5.4076	0.18616	5.4076	5.3278	5.5139	0	801	58	0.78619514174348	0.0388988292110642	0.78619514174348	477.632577209219	0	23.6319802298701						465	22	4	NaN	NaN	NaN	0.058018	1	10353	25.254	17.071	1	220140			19838	1174	16737	17223	19838	19838		
VADMALHYANK	11	Unmodified	_VADMALHYANK_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.808248	1231.60194	1.7556	0.0010829	-0.082494	-5.0883E-05	1.6731	0.001032	616.808231183144	5.4076	0.22166	5.4076	5.3544	5.576	0	531	58	0.969216233931596	0.0384158376205809	0.969216233931596	392.551784571349	0	15.5591756367822						668	26	3	NaN	NaN	NaN	2.8059E-05	1	10354	107.08	85.075	1	330110			19839	1174	16737	17223	19839	19839		
VADNLAIQLAAVTEDK	16	Unmodified	_VADNLAIQLAAVTEDK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.951609	1669.88867	2.4844	0.0020768	-2.0274	-0.0016948	0.457	0.00038203	835.951183158584	15.065	0.29266	15.065	14.914	15.207	1.7764E-15	336	67	1.09998710857178	0.0440628000558998	1.09998710857178	444.21806878913	0	17.7942921273755						846	34	6	NaN	NaN	NaN	6.5201E-09	1	23628	141.88	105.36	1	358430			19840	1606	16738	17224	19840	19840		
VADNSFDAK	9	Unmodified	_VADNSFDAK_			0	0	0	Q14978	Q14978	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.729989	965.445425	0.045921	2.2213E-05	1.2158	0.00058814	1.2618	0.00061035	483.730472708465	3.0755	0.18621	3.0755	3.04	3.2262	0	777	37	0.802556497112065	0.0245215525463975	0.802556497112065	326.042566172088	0	9.96200260981101						262	22	2	NaN	NaN	NaN	0.046517	1	3542	34.781	24.702	1	72600			19841	1781	16739	17225	19841	19841		
VADPDHDHTGFLTEYVATR	19	Unmodified	_VADPDHDHTGFLTEYVATR_			0	0	0	P28482	P28482	P28482	MAPK1	Mitogen-activated protein kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.339625	2142.99705	0.41212	0.0002948	1.9509	0.0013956	2.3631	0.0016904	715.675710300348	9.9484	0.070932	9.9484	9.913	9.9839	0	621	22	0.908462957275599	0.0142062317048673	0.908462957275599	549.306927636091	0	8.58987306922165						120	9	3	NaN	NaN	NaN	0.0015869	1	33921	44.571	44.052	1	28822			19842	879	16740	17226	19842	19842		
VADPTPFHIQAEVTMK	16	Unmodified	_VADPTPFHIQAEVTMK_			0	0	0	P16152	P16152	P16152	CBR1	Carbonyl reductase [NADPH] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.306428	1782.89746	0.88468	0.00052666	0.60926	0.0003627	1.4939	0.00088935	595.307510871442	11.447	0.22175	11.447	11.332	11.553	0	549	52	0.957085760909907	0.0344006212312528	0.957085760909907	579.458257216421	0	20.8275212525079						566	26	4	NaN	NaN	NaN	0.0013769	1	26762	44.571	42.27	1	131700			19843	724	16741	17227	19843	19843		
VADPVVTFCETVVETSSLK	19	Unmodified	_VADPVVTFCETVVETSSLK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.02719	2080.03982	0.74571	0.00077631	-1.9148	-0.0019934	-1.1691	-0.0012171	1041.52640739052	18.071	0.30145	18.071	17.841	18.142	0	144	58	1.22760721615852	0.0377442619775126	1.22760721615852	494.950743663664	0	15.2178565659342						975	35	4	NaN	NaN	NaN	2.3019E-05	1	33028	58.794	0	1	242940			19844	1796	16742	17228	19844	19844		
VADPVVTFCETVVETSSLK	19	Unmodified	_VADPVVTFCETVVETSSLK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.353884	2080.03982	-0.41394	-0.00028742	1.2173	0.00084524	0.80337	0.00055783	694.354939285744	18	0.12414	18	17.938	18.062	0	585	16	0.932794566565362	0.0101290424509727	0.932794566565362	564.128982111194	0	6.12577153903032						124	15	2	NaN	NaN	NaN	0.051314	1	33030	7.3112	7.1887	1	27145			19845	1796	16742	17228	19845	19845		
VADTFQDYFGECSEAAIK	18	Unmodified	_VADTFQDYFGECSEAAIK_			0	0	0	Q9Y2T2	Q9Y2T2	Q9Y2T2	AP3M1	AP-3 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.95676	2049.89897	1.464	0.001502	1.2294	0.0012613	2.6934	0.0027633	1026.45968149295	14.054	0.1064	14.054	14.019	14.125	0	180	31	1.203763835057	0.0198885785601712	1.203763835057	485.384801609824	0	8.01952465889866						232	13	4	NaN	NaN	NaN	0.0026655	1	32540	51.829	51.465	1	47301			19846	3352	16743	17229	19846	19846		
VADVVTPLWTVPYAEQLER	19	Unmodified	_VADVVTPLWTVPYAEQLER_			0	0	0	Q8IZ69	Q8IZ69	Q8IZ69	TRMT2A	tRNA (uracil-5-)-methyltransferase homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.57824	2185.14192	-0.78282	-0.00085608	1.3505	0.0014769	0.56771	0.00062084	1094.08159079952	18.24	0.062099	18.24	18.204	18.266	0	69	28	1.27715511956461	0.0178103798692488	1.27715511956461	514.763339882851	0	7.17855684531276						143	8	3	NaN	NaN	NaN	0.00011767	1	34526	49.487	45.637	1	23720			19847	2230	16744	17230	19847	19847		
VADYCENNYIQATDK	15	Unmodified	_VADYCENNYIQATDK_			0	0	0	Q8IZP0	Q8IZP0	Q8IZP0	ABI1	Abl interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.396341	1802.77813	2.7474	0.0024793	-1.1935	-0.001077	1.5539	0.0014023	902.394647112833	7.3053	0.11528	7.3053	7.261	7.3762	0	327	34	1.10599442759226	0.0220238059754376	1.10599442759226	446.372997552985	0	8.88868157517123						289	14	5	NaN	NaN	NaN	0.00015044	1	27275	79.235	71.66	1	54535			19848	2233	16745	17231	19848	19848		
VAEAHENIIHGSGATGK	17	Unmodified	_VAEAHENIIHGSGATGK_			0	0	0	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.288425	1689.84345	1.3732	0.00077486	1.2	0.00067715	2.5732	0.001452	564.289452976333	2.9513	0.14187	2.9513	2.907	3.0488	0	687	40	0.863749705078866	0.0264599929662752	0.863749705078866	523.170767112253	0	16.0267433222302						291	17	4	NaN	NaN	NaN	0.00075844	1	24210	76.009	65.988	1	84330			19849	1576	16746	17232	19849	19849		
VAEAHVPNFIFDEFR	15	Unmodified	_VAEAHVPNFIFDEFR_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	597.633533	1789.87877	-0.94226	-0.00056313	-1.0857	-0.00064882	-2.0279	-0.001212	597.632467430541	15.482	0.10654	15.482	15.437	15.544	0	726	28	0.837263974740672	0.0183541170899648	0.837263974740672	506.898088015466	0	11.1119875460984						256	13	4	NaN	NaN	NaN	0.00016106	1	26964	69.641	59.156	1	72043			19850	1592	16747	17233	19850	19850		
VAEAVATFLIR	11	Unmodified	_VAEAVATFLIR_			0	0	0	Q9Y570	Q9Y570	Q9Y570	PPME1	Protein phosphatase methylesterase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.350606	1188.68666	0.63435	0.00037766	1.3979	0.00083226	2.0323	0.0012099	595.35120313059	14.045	0.15075	14.045	13.992	14.143	0	507	58	0.985374541851584	0.0383680338413804	0.985374541851584	399.255875578171	0	15.5460307679235						385	18	3	NaN	NaN	NaN	0.0071088	1	9133	53.517	48.61	1	91468			19851	3424	16748	17234	19851	19851		
VAEDEAEAAAAAK	13	Unmodified	_VAEDEAEAAAAAK_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.301507	1244.58846	3.3135	0.0020653	-0.30242	-0.0001885	3.0111	0.0018768	623.301797564886	4.0243	0.31035	4.0243	3.9711	4.2815	0	519	73	0.97729762293174	0.0484883664800192	0.97729762293174	395.779126043911	0	19.6364780374578						1400	36	5	NaN	NaN	NaN	7.0442E-06	1	10760	145.75	129.29	1	1245100			19852	576	16749	17235	19852	19852		
VAEEEETSVK	10	Unmodified	_VAEEEETSVK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.772051	1119.52955	1.1588	0.00064985	-1.2377	-0.00069409	-0.078897	-4.4243E-05	560.771709124799	2.5611	0.25717	2.5611	2.5345	2.7917	0	681	25	0.867820189810857	0.0162819401050979	0.867820189810857	351.874100925142	0	6.6018204036564						299	30	3	NaN	NaN	NaN	0.0013898	1	7247	55.235	42.408	1	64496			19853	3357	16750	17236	19853	19853		
VAEEHAPSIVFIDEIDAIGTK	21	Unmodified	_VAEEHAPSIVFIDEIDAIGTK_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.058236	2253.15288	-0.34063	-0.00025617	0.10046	7.5554E-05	-0.24017	-0.00018062	752.392537643908	16.723	0.17734	16.723	16.661	16.839	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	576.079400061273	0	12.2292065613167						640	21	6	NaN	NaN	NaN	4.2846E-11	1	35219	139.7	133.5	1	318380			19854	1368	16751	17237	19854	19854		
VAEFHTELER	10	Unmodified	_VAEFHTELER_			0	0	0	P48556	P48556	P48556	PSMD8	26S proteasome non-ATPase regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	410.875293	1229.60405	-1.0245	-0.00042094	-0.52337	-0.00021504	-1.5479	-0.00063598	410.875031019923	5.6292	0.079871	5.6292	5.5937	5.6736	0	852	25	0.751366682244005	0.0164092837353766	0.751366682244005	456.481672606602	0	9.96921671244468						158	10	3	NaN	NaN	NaN	0.014058	1	10290	46.447	38.889	1	45262			19855	1110	16752	17238	19855	19855		
VAEGQVTCPYLPPFPAR	17	Unmodified	_VAEGQVTCPYLPPFPAR_			0	0	0	Q96DV4	Q96DV4	Q96DV4	MRPL38	39S ribosomal protein L38, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.482553	1900.95055	1.9811	0.001885	-0.19154	-0.00018224	1.7896	0.0017027	951.984675466114	13.478	0.20395	13.478	13.389	13.593	0	243	19	1.16194328902838	0.0119643277398083	1.16194328902838	468.76870888854	0	4.82682977755229						251	24	3	NaN	NaN	NaN	0.024651	1	29621	23.149	19.644	1	51621			19856	2507	16753	17239	19856	19856		
VAELENSEFR	10	Unmodified	_VAELENSEFR_			0	0	0	P19256	P19256	P19256	CD58	Lymphocyte function-associated antigen 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.293485	1192.57242	0.80678	0.00048188	-3.7367	-0.0022319	-2.93	-0.00175	597.291999963411	6.8087	0.15072	6.8087	6.7289	6.8796	0	618	34	0.910492137470517	0.0223178910428838	0.910492137470517	368.901114516537	0	9.04246675018112						292	18	3	NaN	NaN	NaN	0.00096955	1	9224	60.892	33.155	1	70254			19857	763	16754	17240	19857	19857		
VAELILHGQEEEK	13	Unmodified	_VAELILHGQEEEK_			0	0	0	Q8IWE2	Q8IWE2	Q8IWE2	FAM114A1	Protein NOXP20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.893563	1493.77257	1.5531	0.0011615	-0.671	-0.00050184	0.88208	0.0006597	747.893020347571	6.3033	0.12417	6.3033	6.2678	6.3919	0	384	28	1.06790610341098	0.0180667195029678	1.06790610341098	431.680677445555	0	7.30312682861262						210	15	3	NaN	NaN	NaN	3.4789E-06	1	18352	114.93	95.611	1	52256			19858	2203	16755	17241	19858	19858		
VAELLLLHGAEPNCADPATLTR	22	Unmodified	_VAELLLLHGAEPNCADPATLTR_			0	0	0	P42771;P42772	P42771	P42771	CDKN2A;CDKN2B	Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.745886	2360.21583	1.0787	0.00084978	-0.20937	-0.00016493	0.86937	0.00068484	788.080342822579	13.451	0.1064	13.451	13.407	13.513	0	552	100	0.955063035883597	0.0666577118874891	0.955063035883597	577.141838843823	0	40.2810630989136						860	13	5	NaN	NaN	NaN	2.2506E-17	1	36128	135.89	127.48	1	205120			19859	1058	16756	17242	19859	19859		
VAELLLLHGAEPNCADPATLTRPVHDAAR	29	Unmodified	_VAELLLLHGAEPNCADPATLTRPVHDAAR_			0	0	1	P42771;P42772	P42771	P42771	CDKN2A;CDKN2B	Cyclin-dependent kinase inhibitor 2A;Cyclin-dependent kinase 4 inhibitor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	777.656827	3106.5982	1.0558	0.00082104	1.596	0.0012412	2.6518	0.0020622	777.907722509523	11.908	0.16849	11.908	11.811	11.979	0	390	88	1.06389100039157	0.0582310963458759	1.06389100039157	856.001081359415	0	46.8524326481454						893	20	4	NaN	NaN	NaN	1.421E-28	1	38370	136.27	126.04	1	177940			19860	1058	16757	17243	19860	19860		
VAELSATQCCK	11	Unmodified	_VAELSATQCCK_			0	0	0	Q5TAQ9	Q5TAQ9	Q5TAQ9	DCAF8	DDB1- and CUL4-associated factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.79448	1265.57441	2.0798	0.0013181	1.5965	0.0010119	3.6763	0.00233	634.297648973937	3.8292	0.062003	3.8292	3.7938	3.8558	0	621	16	0.908462957275599	0.0101459012671226	0.908462957275599	367.836000123914	0	4.10806814946267						52	8	2	NaN	NaN	NaN	0.030757	1	11369	46.033	42.14	1	8884.9			19861	1998	16758	17244	19861	19861		
VAELSSDDFHLDR	13	Unmodified	_VAELSSDDFHLDR_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.907322	1502.70014	-1.2066	-0.00060563	0.64409	0.00032327	-0.56256	-0.00028235	501.907713674956	9.3632	0.133	9.3632	9.3278	9.4608	0	738	28	0.829104889055312	0.018364325465562	0.829104889055312	502.694263938555	0	11.1344670553775						335	16	5	NaN	NaN	NaN	0.001315	1	18589	54.27	44.756	1	133490			19862	2441	16759	17245	19862	19862		
VAELSSDDFHLDR	13	Unmodified	_VAELSSDDFHLDR_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.357345	1502.70014	1.0679	0.00080347	1.5164	0.0011408	2.5843	0.0019443	752.358866241734	9.3632	0.10641	9.3632	9.3278	9.4342	0	399	34	1.0578662689527	0.0220967798859319	1.0578662689527	427.598935645735	0	8.93171456329429						261	13	4	NaN	NaN	NaN	0.0055617	1	18590	62.705	54.704	1	64830			19863	2441	16759	17245	19863	19863		
VAETANEEEVK	11	Unmodified	_VAETANEEEVK_			0	0	0	P61221	P61221	P61221	ABCE1	ATP-binding cassette sub-family E member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.796057	1217.57756	1.6069	0.0009799	-2.7391	-0.0016703	-1.1321	-0.00069037	610.295182397662	2.7474	0.1862	2.7474	2.7208	2.907	0	657	34	0.884090832094921	0.0223581674407913	0.884090832094921	358.120031084836	0	9.05665722143414						303	22	3	NaN	NaN	NaN	0.00051159	1	9946	90.263	74.681	1	57133			19864	1335	16760	17246	19864	19864		
VAETAVQLFISGDK	14	Unmodified	_VAETAVQLFISGDK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.398481	1476.78241	1.4935	0.0011043	-1.2345	-0.00091281	0.25902	0.00019152	739.397406142009	14.551	0.35468	14.551	14.4	14.755	0	399	79	1.0578662689527	0.0522756488881593	1.0578662689527	427.667426031902	0	21.1336658141864						837	41	4	NaN	NaN	NaN	7.4235E-08	1	17802	147.72	131.43	1	221410			19865	1392	16761	17247	19865	19865		
VAEVEGEQVDNK	12	Unmodified	_VAEVEGEQVDNK_			0	0	0	O95202	O95202	O95202	LETM1	LETM1 and EF-hand domain-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.820064	1315.62557	2.1625	0.0014247	0.52297	0.00034454	2.6854	0.0017692	658.821938196952	3.5455	0.21279	3.5455	3.5012	3.714	0	567	61	0.944945209309785	0.0404517201034513	0.944945209309785	382.45048873915	0	16.3721451481875						498	25	3	NaN	NaN	NaN	2.8559E-05	1	12826	106	73.455	1	119400			19866	411	16762	17248	19866	19866		
VAEVLSSLLGGEGHFSK	17	Unmodified	_VAEVLSSLLGGEGHFSK_			0	0	0	Q9NYY8	Q9NYY8	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.308826	1728.90465	0.50872	0.00029369	0.74292	0.00042889	1.2516	0.00072258	577.309581760231	14.373	0.09752	14.373	14.329	14.427	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	568.567216648688	0	14.7185584817341						282	12	4	NaN	NaN	NaN	0.040863	1	25304	20.29	17.988	1	72353			19867	3123	16763	17249	19867	19867		
VAEVLSSLLGGEGHFSK	17	Unmodified	_VAEVLSSLLGGEGHFSK_			0	0	0	Q9NYY8	Q9NYY8	Q9NYY8	FASTKD2	FAST kinase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.459601	1728.90465	1.9141	0.0016565	0.62472	0.00054067	2.5388	0.0021972	865.460427151216	14.373	0.11525	14.373	14.302	14.418	0	207	61	1.18585551256002	0.0398099498942783	1.18585551256002	478.760542250607	0	16.0723064458408						331	14	4	NaN	NaN	NaN	1.9264E-06	1	25305	107.6	86.99	1	70342			19868	3123	16763	17249	19868	19868		
VAFDELVR	8	Unmodified	_VAFDELVR_			0	0	0	O60547	O60547	O60547	GMDS	GDP-mannose 4,6 dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.761092	947.507631	-0.73872	-0.00035072	2.0188	0.00095846	1.2801	0.00060774	474.762621043079	10.746	0.08868	10.746	10.702	10.791	0	741	25	0.827064408645228	0.016324979319214	0.827064408645228	336.088322861666	0	6.63386655597162						171	11	4	NaN	NaN	NaN	0.050075	1	3203	34.931	25.538	1	47014			19869	265	16764	17250	19869	19869		
VAFITGGGTGLGK	13	Unmodified	_VAFITGGGTGLGK_			0	0	0	Q16698	Q16698	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.332413	1176.65027	1.2722	0.00074973	-2.0872	-0.0012301	-0.81504	-0.00048033	589.330707606932	9.6204	0.12413	9.6204	9.5672	9.6913	0	591	55	0.928742107665821	0.0364569900651212	0.928742107665821	376.353619597774	0	14.7734447026767						335	15	3	NaN	NaN	NaN	0.0031974	1	8805	78.932	35.66	1	109640			19870	1900	16765	17251	19870	19870		
VAFTGSTEVGHLIQK	15	Unmodified	_VAFTGSTEVGHLIQK_			0	0	0	P30837	P30837	P30837	ALDH1B1	Aldehyde dehydrogenase X, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.93048	1585.84641	2.058	0.0016339	-0.4233	-0.00033607	1.6347	0.0012978	793.93019294182	9.709	0.070933	9.709	9.6824	9.7534	0	240	28	1.16393748060522	0.0179477258867462	1.16393748060522	470.248683618068	0	7.25115791252961						118	9	3	NaN	NaN	NaN	0.00076952	1	21154	52.837	38.382	1	28449			19871	917	16766	17252	19871	19871		
VAFVDMLLK	9	Unmodified	_VAFVDMLLK_			0	0	0	Q86XI2	Q86XI2	Q86XI2	NCAPG2	Condensin-2 complex subunit G2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.298996	1034.58344	-1.3847	-0.00071769	-1.0778	-0.00055865	-2.4626	-0.0012763	518.298260345497	16.777	0.088664	16.777	16.741	16.83	0	687	31	0.863749705078866	0.0203552522347787	0.863749705078866	350.573161633796	0	8.26165854510845						151	11	2	NaN	NaN	NaN	0.058279	1	5114	25.254	16.491	1	37845			19872	2187	16767	17253	19872	19872		
VAFVNWINK	9	Unmodified	_VAFVNWINK_			0	0	0	Q14651	Q14651	Q14651	PLS1	Plastin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.805834	1089.59712	0.094624	5.1647E-05	-2.8648	-0.0015636	-2.7702	-0.001512	545.804785822643	12.972	0.10641	12.972	12.928	13.034	0	666	31	0.877991458330206	0.0203354810451108	0.877991458330206	356.117161247478	0	8.24815972146189						236	13	3	NaN	NaN	NaN	0.011987	1	6458	63.301	51.235	1	61169			19873	1760	16768	17254	19873	19873		
VAGEDMLVWR	10	Unmodified	_VAGEDMLVWR_			0	0	0	Q8NC56	Q8NC56	Q8NC56	LEMD2	LEM domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.297516	1174.58048	0.52547	0.00030913	1.5183	0.00089321	2.0438	0.0012023	588.30003751361	12.538	0.15073	12.538	12.476	12.626	0	612	61	0.914549654013882	0.0405470750035098	0.914549654013882	370.609971834392	0	16.4312022415239						333	18	3	NaN	NaN	NaN	0.007163	1	8721	58.916	44.153	1	76575			19874	2297	16769	17255	19874	19874		
VAGHSLGYGFVNYVTAK	17	Unmodified	_VAGHSLGYGFVNYVTAK_			0	0	0	Q15717	Q15717	Q15717	ELAVL1	ELAV-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.9773	1781.91007	0.19486	0.00011594	-0.30219	-0.0001798	-0.10733	-6.386E-05	595.311858322926	11.545	0.23059	11.545	11.5	11.731	0	633	91	0.900343422309015	0.0609303683403489	0.900343422309015	545.106492910536	0	36.8898562201693						843	27	5	NaN	NaN	NaN	0.00049501	1	26726	106.97	105.38	1	247230			19875	1864	16770	17256	19875	19875		
VAGIESHSELQISR	14	Unmodified	_VAGIESHSELQISR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.270483	1524.78962	-1.1385	-0.00057982	-1.4518	-0.00073935	-2.5903	-0.0013192	509.269910357279	6.6845	0.13301	6.6845	6.6402	6.7732	0	813	28	0.778007628350577	0.0184283211995636	0.778007628350577	471.651223999127	0	11.1717930946901						230	16	4	NaN	NaN	NaN	0.00014238	1	19272	50.116	42.976	1	54411			19876	1782	16771	17257	19876	19876		
VAGIESHSELQISR	14	Unmodified	_VAGIESHSELQISR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.402086	1524.78962	2.167	0.0016543	-1.0715	-0.00081799	1.0955	0.0008363	763.400960053095	6.6757	0.17732	6.6757	6.6402	6.8175	0	396	31	1.05987478976334	0.0200865957702232	1.05987478976334	428.354162593549	0	8.11810696283311						266	21	3	NaN	NaN	NaN	0.01012	1	19274	37.504	30.757	1	67753			19877	1782	16771	17257	19877	19877		
VAGISLAYSSVQDVQK	16	Unmodified	_VAGISLAYSSVQDVQK_			0	0	0	Q9NX46	Q9NX46	Q9NX46	ADPRHL2	Poly(ADP-ribose) glycohydrolase ARH3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.946327	1663.8781	1.8348	0.0015283	0.71767	0.00059778	2.5525	0.0021261	832.946922489104	11.837	0.079817	11.837	11.802	11.882	0	300	28	1.12400150285141	0.0179996405017726	1.12400150285141	453.929509817351	0	7.26917888377437						174	10	3	NaN	NaN	NaN	3.8306E-07	1	23460	106.47	87.655	1	38211			19878	3095	16772	17258	19878	19878		
VAGLGTPSFAPYEANVDFEIR	21	Unmodified	_VAGLGTPSFAPYEANVDFEIR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1127.06295	2252.11135	-0.032546	-3.6682E-05	-1.1225	-0.0012652	-1.1551	-0.0013018	1127.56383914298	16.901	0.070989	16.901	16.865	16.936	0	96	40	1.2593374219024	0.0257472537189445	1.2593374219024	507.486479675876	0	10.3756014265107						203	9	3	NaN	NaN	NaN	1.9868E-05	1	35209	66.509	58.142	1	38779			19879	878	16773	17259	19879	19879		
VAGMDVELTVEER	13	Unmodified	_VAGMDVELTVEER_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.358499	1446.70244	1.8761	0.001359	2.157	0.0015624	4.0331	0.0029214	724.359774134514	11.252	0.34589	11.252	11.146	11.491	0	438	64	1.03173026378327	0.0422313695297207	1.03173026378327	417.181810613753	0	17.0763229727343						484	40	2	NaN	NaN	NaN	0.071659	1	16881	42.061	25.409	1	248210			19880	1375	16774	17260	19880	19880		
VAGQDGSVVQFK	12	Unmodified	_VAGQDGSVVQFK_			0	0	0	P61956;P55854;Q6EEV6	P61956	P61956	SUMO2;SUMO3;SUMO4	Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3;Small ubiquitin-related modifier 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.824952	1233.63535	1.7503	0.0010813	0.18336	0.00011329	1.9336	0.0011946	617.824716545465	6.8974	0.34586	6.8974	6.7732	7.1191	0	546	64	0.959108205975751	0.0424890099492728	0.959108205975751	388.450734663215	0	17.2085767039355						374	40	2	NaN	NaN	NaN	0.00057979	1	10435	74.849	58.969	1	144910			19881	1354	16775	17261	19881	19881		
VAGQDGSVVQFK	12	Unmodified	_VAGQDGSVVQFK_			0	0	0	P61956;P55854;Q6EEV6	P61956	P61956	SUMO2;SUMO3;SUMO4	Small ubiquitin-related modifier 2;Small ubiquitin-related modifier 3;Small ubiquitin-related modifier 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.824952	1233.63535	2.0028	0.0012374	1.3984	0.00086398	3.4012	0.0021013	617.825861791835	6.6757	0.23941	6.6757	6.6136	6.853	0	555	70	0.953040030838688	0.0465355872308373	0.953040030838688	385.993043173012	0	18.8474905039055						1075	28	5	NaN	NaN	NaN	2.6538E-11	1	10437	157.77	141.31	1	1287700			19882	1354	16775	17261	19882	19882		
VAGSVTELIQAAEAMK	16	Unmodified	_VAGSVTELIQAAEAMK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.429455	1616.84436	1.9699	0.0015945	0.12231	9.8998E-05	2.0922	0.0016935	809.429076590073	17.637	0.088652	17.637	17.583	17.672	0	348	37	1.09197348738011	0.024050805866118	1.09197348738011	441.100887429934	0	9.71528332286033						283	11	4	NaN	NaN	NaN	0.0001569	1	22114	83.214	62.064	1	62190			19883	3406	16776	17262	19883	19883		
VAGTGEGGLEEMVEELNSGK	20	Unmodified	_VAGTGEGGLEEMVEELNSGK_			0	0	0	Q9UJU6	Q9UJU6	Q9UJU6	DBNL	Drebrin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.47278	2004.931	1.1004	0.0011042	1.5152	0.0015204	2.6156	0.0026246	1003.4756735911	16.262	0.12413	16.262	16.218	16.342	0	234	73	1.16792504164217	0.0478244714372151	1.16792504164217	471.004841613207	0	19.2868178961628						699	15	4	NaN	NaN	NaN	0.0012677	1	31714	44.16	39.854	1	175250			19884	3249	16777	17263	19884	19884		
VAGTQACATETIDTSR	16	Unmodified	_VAGTQACATETIDTSR_			0	0	0	Q9BRR6	Q9BRR6	Q9BRR6	ADPGK	ADP-dependent glucokinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.896508	1679.77846	3.1594	0.0026567	-2.6996	-0.0022701	0.45983	0.00038667	840.894186257442	5.0972	0.079791	5.0972	5.0617	5.1415	0	405	31	1.05384839605172	0.0200921384005985	1.05384839605172	425.564822338202	0	8.11360281125826						170	10	3	NaN	NaN	NaN	0.0011294	1	23902	52.662	46.963	1	35345			19885	2712	16778	17264	19885	19885		
VAHALAEGLGVIACIGEK	18	Unmodified	_VAHALAEGLGVIACIGEK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.329344	1806.9662	-0.16711	-0.00010082	-3.2025	-0.0019321	-3.3696	-0.002033	603.328174401676	14.489	0.12412	14.489	14.444	14.568	0	690	64	0.86171403876517	0.042749015256945	0.86171403876517	521.662818220229	0	25.8793181634061						496	15	5	NaN	NaN	NaN	0.0012444	1	27400	54.309	50.002	1	181820			19886	1303	16779	17265	19886	19886		
VAHALAEGLGVIACIGEK	18	Unmodified	_VAHALAEGLGVIACIGEK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.490378	1806.9662	1.9727	0.0017843	-3.8904	-0.0035189	-1.9178	-0.0017346	905.483016250594	14.498	0.14187	14.498	14.453	14.595	0	258	55	1.15196821829984	0.0359127357341398	1.15196821829984	464.919538926322	0	14.4939176913588						419	17	4	NaN	NaN	NaN	0.045488	1	27401	47.915	41.887	1	106950			19887	1303	16779	17265	19887	19887		
VAHALAEGLGVIACIGEK	18	Unmodified	_VAHALAEGLGVIACIGEK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.490378	1806.9662	1.6497	0.0014922	-0.31741	-0.00028709	1.3323	0.0012051	904.490347001608	14.489	0.25714	14.489	14.444	14.701	1.7764E-15	108	115	1.25141139212444	0.0754420423257371	1.25141139212444	505.053509585354	0	30.4474359804387						1748	30	6	NaN	NaN	NaN	4.5824E-19	1	27406	153.05	141.57	1	839530			19888	1303	16779	17265	19888	19888		
VAHMEFCYQELCQLAAER	18	Unmodified	_VAHMEFCYQELCQLAAER_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	752.339586	2253.99693	0.64554	0.00048567	-1.733	-0.0013038	-1.0875	-0.00081815	752.672830073961	14.427	0.097534	14.427	14.4	14.498	0	579	28	0.936845902828289	0.0182272273449463	0.936845902828289	566.289323250974	0	11.0176969411405						272	12	5	NaN	NaN	NaN	1.8066E-08	1	35224	128.46	126.36	1	75407			19889	1511	16780	17266	19889	19889		
VAHNILSGASWVSWGLVK	18	Unmodified	_VAHNILSGASWVSWGLVK_			0	0	0	Q8N0X7	Q8N0X7	Q8N0X7	SPG20	Spartin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	642.019499	1923.03667	-0.96815	-0.00062157	-2.1666	-0.001391	-3.1348	-0.0020126	642.352572451181	16.519	0.06205	16.519	16.484	16.546	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	522.654970479365	0	11.0860367543423						118	8	3	NaN	NaN	NaN	0.027438	1	30135	24.922	21.417	1	24660			19890	2235	16781	17267	19890	19890		
VAHSFNCTPIEGMLSHQLK	19	Unmodified	_VAHSFNCTPIEGMLSHQLK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.690836	2168.05068	1.6215	0.0011734	0.3335	0.00024135	1.955	0.0014148	724.025582068984	11.456	0.27501	11.456	11.332	11.607	0	480	34	1.00353128488872	0.0221793099010968	1.00353128488872	606.74538561019	0	13.4098399732513						924	32	5	NaN	NaN	NaN	6.4802E-11	1	34282	162	149.32	1	457690			19891	3319	16782	17268	19891	19891		
VAHSFNCTPIEGMLSHQLK	19	Unmodified	_VAHSFNCTPIEGMLSHQLK_			0	0	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1085.03262	2168.05068	1.1369	0.0012336	1.1471	0.0012447	2.2841	0.0024783	1085.53536285456	11.465	0.079816	11.465	11.412	11.491	0	138	34	1.23157729878518	0.021833960416243	1.23157729878518	496.417706584497	0	8.8007180435846						168	10	3	NaN	NaN	NaN	0.017757	1	34283	26.682	25.058	1	27114			19892	3319	16782	17268	19892	19892		
VAHSFNCTPIEGMLSHQLK	19	Oxidation (M)	_VAHSFNCTPIEGM(Oxidation (M))LSHQLK_	VAHSFNCTPIEGM(1)LSHQLK	VAHSFNCTPIEGM(41)LSHQLK	0	1	0	Q9UQ80	Q9UQ80	Q9UQ80	PA2G4	Proliferation-associated protein 2G4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.022474	2184.04559	1.5609	0.001138	-0.0093674	-6.8291E-06	1.5516	0.0011311	729.356489133254	8.3342	0.17746	8.3342	8.2188	8.3963	0	459	37	1.01763759082241	0.024173890872869	1.01763759082241	615.245544242089	0	14.6151034323601						311	21	4	NaN	NaN	NaN	0.054114	1	34508	41.499	40.932	1	66820			19893	3319	16782	17269	19893	19893	645	
VAIAALEVLEEENLAENADK	20	Unmodified	_VAIAALEVLEEENLAENADK_			0	0	0	P04181	P04181	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.05225	2140.08994	0.72844	0.00078019	1.859	0.0019911	2.5874	0.0027713	1071.55574662941	17.406	0.1685	17.406	17.335	17.504	0	129	49	1.23753038177212	0.031743256663868	1.23753038177212	498.858729793554	0	12.7959692401024						471	20	5	NaN	NaN	NaN	7.1289E-11	1	33886	78.888	77.3	1	100400			19894	510	16783	17270	19894	19894		
VAIAENLLDVIK	12	Unmodified	_VAIAENLLDVIK_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.389928	1296.7653	0.090099	5.8509E-05	-0.92061	-0.00059783	-0.83051	-0.00053933	649.389198358521	17.087	0.13299	17.087	17.043	17.176	0	522	34	0.975277694896658	0.0222192115744939	0.975277694896658	394.786711372373	0	8.99420699630673						244	16	3	NaN	NaN	NaN	0.005045	1	12271	63.212	48.449	1	83647			19895	2401	16784	17271	19895	19895		
VAIEHLDK	8	Unmodified	_VAIEHLDK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.761092	923.507631	0.96607	0.00044706	1.2294	0.00056891	2.1955	0.001016	462.761766877757	3.6696	0.28373	3.6696	3.6253	3.909	-4.4409E-16	711	40	0.847456455381371	0.0264930907704451	0.847456455381371	344.502830417538	0	10.7698097040512						568	33	4	NaN	NaN	NaN	0.0034318	1	2771	67.464	50.068	1	405240			19896	1113	16785	17272	19896	19896		
VAIEPGAPR	9	Unmodified	_VAIEPGAPR_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.261259	908.507966	-0.26352	-0.00011997	-1.5187	-0.00069141	-1.7822	-0.00081138	455.260525349333	4.5741	0.24826	4.5741	4.4677	4.7159	0	780	61	0.800512323802183	0.0408465318656115	0.800512323802183	325.49813890311	0	16.6087013373558						507	29	3	NaN	NaN	NaN	0.0055515	1	2482	72.492	55.945	1	133100			19897	1508	16786	17273	19897	19897		
VAIHEAMEQQTISIAK	16	Unmodified	_VAIHEAMEQQTISIAK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.966736	1767.91892	2.5098	0.0022211	-2.1325	-0.0018872	0.37736	0.00033395	884.965018818871	8.4495	0.062066	8.4495	8.4229	8.485	0	276	28	1.13998907770044	0.0179773638356826	1.13998907770044	460.162292212177	0	7.2566528156982						152	8	4	NaN	NaN	NaN	0.00019603	1	26352	70.806	63.23	1	30183			19898	951	16787	17274	19898	19898		
VAIHEAMEQQTISIAK	16	Unmodified	_VAIHEAMEQQTISIAK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.313583	1767.91892	0.40401	0.00023849	0.35498	0.00020955	0.75899	0.00044804	590.313781478781	8.4584	0.079787	8.4584	8.4229	8.5027	0	660	52	0.882057989648486	0.0345775238845497	0.882057989648486	534.068301108357	0	20.9359924792636						250	10	4	NaN	NaN	NaN	0.028284	1	26353	48.822	40.448	1	52225			19899	951	16787	17274	19899	19899		
VAIHYINPPNPAK	13	Unmodified	_VAIHYINPPNPAK_			0	0	0	P78406	P78406	P78406	RAE1	mRNA export factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	478.601504	1432.78268	0.35642	0.00017058	0.32986	0.00015787	0.68628	0.00032846	478.601745290427	7.3142	0.25714	7.3142	7.1545	7.4117	0	702	34	0.853568545818287	0.0224078882408908	0.853568545818287	517.756913151066	0	13.5921585942644						338	30	2	NaN	NaN	NaN	0.046183	1	16482	60.892	57.547	1	89988			19900	1462	16788	17275	19900	19900		
VAILVDDMADTCGTICHAADK	21	Unmodified	_VAILVDDMADTCGTICHAADK_			0	0	0	P60891;P11908	P60891;P11908	P60891	PRPS1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.350039	2275.02829	0.9775	0.00074227	0.11465	8.7059E-05	1.0922	0.00082933	759.684588281432	12.148	0.1774	12.148	12.103	12.281	0	513	40	0.981336640919867	0.026255437790293	0.981336640919867	593.148782118588	0	15.8695602507054						698	21	6	NaN	NaN	NaN	3.1352E-08	1	35415	84.105	83.294	1	283270			19901	1313;660	16789	17276	19901	19901		
VAIQLNDTHPSLAIPELMR	19	Unmodified	_VAIQLNDTHPSLAIPELMR_			0	0	0	P11217	P11217	P11217	PYGM	Glycogen phosphorylase, muscle form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.71738	2117.13031	0.31532	0.00022284	-1.1574	-0.00081793	-0.84205	-0.00059509	707.050873932355	15.615	0.088664	15.615	15.562	15.65	0	600	34	0.922661313351899	0.022302429094845	0.922661313351899	557.935900692219	0	13.4863418294324						159	11	3	NaN	NaN	NaN	0.00026816	1	33579	36.181	0	1	25413			19902	647	16790	17277	19902	19902		
VALAGLLGFGLGK	13	Unmodified	_VALAGLLGFGLGK_			0	0	0	Q56VL3	Q56VL3	Q56VL3	OCIAD2	OCIA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.376623	1214.73869	-0.28336	-0.00017239	-1.2398	-0.00075427	-1.5232	-0.00092666	608.375856544257	18.488	0.053276	18.488	18.461	18.515	0	561	25	0.948993180460448	0.016187402676465	0.948993180460448	384.420187642969	0	6.5572277045444						69	7	2	NaN	NaN	NaN	0.060045	1	9878	25.857	22.249	1	12450			19903	1957	16791	17278	19903	19903		
VALDMTTLTIMR	12	Unmodified	_VALDMTTLTIMR_			0	0	0	P62333	P62333	P62333	PSMC6	26S protease regulatory subunit 10B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.867448	1363.72034	0.5382	0.00036752	0.84026	0.00057379	1.3785	0.00094131	682.867986053924	15.668	0.1862	15.668	15.597	15.783	0	483	55	1.00151498427745	0.0363009499025385	1.00151498427745	405.197533880725	0	14.6868050992251						490	22	3	NaN	NaN	NaN	5.5872E-06	1	14308	147.78	137.08	1	215890			19904	1390	16792	17279	19904	19904		
VALEIFQHSK	10	Unmodified	_VALEIFQHSK_			0	0	0	Q9NYK5	Q9NYK5	Q9NYK5	MRPL39	39S ribosomal protein L39, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	391.220513	1170.63971	-2.1841	-0.00085448	0.09775	3.8242E-05	-2.0864	-0.00081624	391.220567779632	8.8044	0.0886	8.8044	8.769	8.8576	0	846	22	0.755468431110051	0.0143531208129216	0.755468431110051	459.229754685675	0	8.72489157516054						128	11	3	NaN	NaN	NaN	0.060777	1	8632	23.053	12.351	1	28834			19905	3116	16793	17280	19905	19905		
VALHLDEEDK	10	Unmodified	_VALHLDEEDK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.79586	1167.57717	1.4857	0.00086881	1.5107	0.00088345	2.9964	0.0017523	584.796708854386	5.3189	0.18622	5.3189	5.2745	5.4608	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	380.492446911594	0	9.84984741951234						472	22	4	NaN	NaN	NaN	0.00079749	1	8540	78.816	61.346	1	183670			19906	1903	16794	17281	19906	19906		
VALIGSPVDLTYTYDHLGDSPK	22	Unmodified	_VALIGSPVDLTYTYDHLGDSPK_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	787.737274	2360.18999	1.0552	0.00083119	2.4543	0.0019333	3.5095	0.0027645	788.073194766035	15.686	0.23941	15.686	15.579	15.819	0	381	40	1.06991323971056	0.0260963753447068	1.06991323971056	646.54551718588	0	15.7699651408039						575	28	6	NaN	NaN	NaN	4.8237E-06	1	36126	74.643	72.541	1	225600			19907	877	16795	17282	19907	19907		
VALILQNVDLPN	12	Unmodified	_VALILQNVDLPN_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.879727	1307.7449	-0.072223	-4.7297E-05	-0.012729	-8.3363E-06	-0.084952	-5.5634E-05	654.879664041885	17.264	0.15077	17.264	17.211	17.362	0	495	85	0.993446994398923	0.056561949877953	0.993446994398923	402.105943966166	0	22.893920235777						569	18	4	NaN	NaN	NaN	0.0020218	1	12601	62.969	41.881	1	170270			19908	1543	16796	17283	19908	19908		
VALLDVFR	8	Unmodified	_VALLDVFR_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.781828	931.549102	-0.77121	-0.00035999	-1.0323	-0.00048187	-1.8035	-0.00084185	466.781482019255	15.65	0.28373	15.65	15.588	15.872	0	699	40	0.85560534332665	0.0264746954397943	0.85560534332665	347.771466593859	0	10.7609702680502						671	33	4	NaN	NaN	NaN	0.00013048	1	2908	100.75	85.256	1	553720			19909	835	16797	17284	19909	19909		
VALLLLEK	8	Unmodified	_VALLLLEK_			0	0	0	Q9Y4W6;Q01484	Q9Y4W6	Q9Y4W6	AFG3L2;ANK2	AFG3-like protein 2;Ankyrin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	449.802229	897.589904	-1.3003	-0.00058488	-0.13329	-5.9954E-05	-1.4336	-0.00064483	449.802240123152	13.221	0.097558	13.221	13.185	13.283	0	750	25	0.820941264895493	0.0163340619501384	0.820941264895493	333.865245249966	0	6.64283284578869						117	12	3	NaN	NaN	NaN	0.044662	1	2287	47.349	23.774	1	28848			19910	3416	16798	17285	19910	19910		
VALLSGGGSGHEPAHAGFIGK	21	Unmodified	_VALLSGGGSGHEPAHAGFIGK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.677913	1961.01191	1.2654	0.00082843	-0.42031	-0.00027517	0.84509	0.00055326	655.012205247795	7.6245	0.1064	7.6245	7.5713	7.6777	-8.8818E-16	576	25	0.938871150116794	0.016200857536437	0.938871150116794	568.032209136853	0	9.80178046283447						270	13	4	NaN	NaN	NaN	0.0009393	1	30947	59.997	55.18	1	70008			19911	1932	16799	17286	19911	19911		
VALRGEDVPLTEQTVSQVLQSAK	23	Unmodified	_VALRGEDVPLTEQTVSQVLQSAK_			0	0	1	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	823.450015	2467.32822	1.6819	0.001385	-0.60963	-0.000502	1.0723	0.00088297	823.447148584857	15.038	0.1064	15.038	14.976	15.083	0	306	70	1.12000185836644	0.0460497984015082	1.12000185836644	676.641979190968	0	27.8206919916973						492	13	4	NaN	NaN	NaN	2.9058E-06	1	36666	58.539	57.442	1	112390			19912	1353	16800	17287	19912	19912		
VALSNMNVIDR	11	Unmodified	_VALSNMNVIDR_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.326805	1230.63906	1.2318	0.0007592	-2.3778	-0.0014655	-1.146	-0.00070633	616.325850786105	9.8952	0.24826	9.8952	9.7711	10.019	0	561	31	0.948993180460448	0.0202370558589571	0.948993180460448	384.364390204513	0	8.19648001157248						200	29	3	NaN	NaN	NaN	0.0037343	1	10327	60.547	44.966	1	42390			19913	1277	16801	17288	19913	19913		
VALSSETEVALAR	13	Unmodified	_VALSSETEVALAR_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.369724	1344.72489	1.3562	0.00091322	1.6509	0.0011117	3.0071	0.0020249	673.37106330619	9.3632	0.33697	9.3632	9.2213	9.5583	0	492	70	0.995464410099171	0.0464198396417231	0.995464410099171	402.806646373007	0	18.7834137931585						1293	39	5	NaN	NaN	NaN	0.0039959	1	13754	74.849	58.196	1	2007900			19914	869	16802	17289	19914	19914		
VALTGLTVAEYFR	13	Unmodified	_VALTGLTVAEYFR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.398284	1438.78202	1.5765	0.0011357	1.1791	0.00084944	2.7556	0.0019852	720.399328287914	16.502	0.3192	16.502	16.448	16.768	0	402	112	1.05585747106793	0.0742334529838058	1.05585747106793	426.959950508549	0	30.0179828059437						1187	37	5	NaN	NaN	NaN	5.8457E-24	1	16644	220.17	188.03	1	1153300			19915	541	16803	17290	19915	19915		
VALVNDSLSDVTSTTSSR	18	Unmodified	_VALVNDSLSDVTSTTSSR_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	926.468352	1850.92215	2.4549	0.0022744	-1.4384	-0.0013326	1.0165	0.00094179	926.46714506831	11.101	0.1153	11.101	11.057	11.172	0	234	67	1.16792504164217	0.0438752548134298	1.16792504164217	471.274232267982	0	17.7042843423305						538	14	3	NaN	NaN	NaN	9.0838E-26	1	28524	177.74	147.4	1	253960			19916	2129	16804	17291	19916	19916		
VALVTFNSAAHNK	13	Unmodified	_VALVTFNSAAHNK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.372601	1370.73065	2.0123	0.0013812	-1.6099	-0.001105	0.40243	0.00027622	686.371493685023	6.6757	0.1419	6.6757	6.6313	6.7732	0	432	28	1.035754240522	0.0181066471151929	1.035754240522	419.028712976483	0	7.32529468880074						296	17	4	NaN	NaN	NaN	3.5501E-05	1	14518	107.08	84.025	1	122410			19917	2175	16805	17292	19917	19917		
VALVTFNSAAHNK	13	Unmodified	_VALVTFNSAAHNK_			0	0	0	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.917493	1370.73065	-1.1662	-0.00053404	3.1392	0.0014375	1.973	0.00090347	458.254047548904	6.6757	0.12414	6.6757	6.6225	6.7466	0	768	25	0.808687310729125	0.0163454259019459	0.808687310729125	490.74484444556	0	9.91907921049807						196	15	3	NaN	NaN	NaN	0.067323	1	14519	27.589	23.696	1	63753			19918	2175	16805	17292	19918	19918		
VALVYGQMNEPPGAR	15	Unmodified	_VALVYGQMNEPPGAR_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.408857	1600.80316	1.9537	0.0015657	0.60854	0.00048769	2.5622	0.0020534	801.910620376562	9.4076	0.31033	9.4076	9.3366	9.647	0	396	118	1.05987478976334	0.0782460861912477	1.05987478976334	428.171110740805	0	31.6100674902438						1411	36	3	NaN	NaN	NaN	4.929E-17	1	21611	171.09	149.94	1	1384700			19919	541	16806	17293	19919	19919		
VAMFLTDSNNIK	12	Unmodified	_VAMFLTDSNNIK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.84757	1351.68059	1.7163	0.0011617	-0.57899	-0.00039189	1.1373	0.00076979	676.847741095388	10.995	0.29263	10.995	10.871	11.163	0	507	100	0.985374541851584	0.0665840089000236	0.985374541851584	398.702997181325	0	26.9412723642154						833	34	6	NaN	NaN	NaN	1.0628E-07	1	13936	158.57	134.99	1	333790			19920	1801	16807	17294	19920	19920		
VAMQDATAQMAMLQFISSGLSK	22	Unmodified	_VAMQDATAQMAMLQFISSGLSK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.718063	2327.13236	-0.17328	-0.00013459	-0.69005	-0.00053597	-0.86333	-0.00067056	777.052186992565	19.969	0.017751	19.969	19.96	19.978	0	582	22	0.934820374997243	0.0141806598395486	0.934820374997243	564.956237200702	0	8.57004451149032						74	3	5	NaN	NaN	NaN	0.0014303	1	35875	34.579	31.326	1	14484			19921	2674	16808	17295	19921	19921		
VAMSHFEPNEYIHYDLLEK	19	Unmodified	_VAMSHFEPNEYIHYDLLEK_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.040299	2334.09907	1.3233	0.0010309	3.2156	0.0025051	4.5388	0.0035359	779.377747663992	13.327	0.10643	13.327	13.274	13.38	0	381	28	1.06991323971056	0.0180642284135071	1.06991323971056	646.587791592757	0	10.9168754280266						297	13	4	NaN	NaN	NaN	0.0006924	1	35930	43.904	42.056	1	82409			19922	2674	16809	17296	19922	19922		
VANAESLNAIGVLIYMDQTK	20	Unmodified	_VANAESLNAIGVLIYMDQTK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.376912	2149.10891	0.45791	0.00032849	-0.61965	-0.00044452	-0.16174	-0.00011603	717.710716044936	18.914	0.13299	18.914	18.878	19.011	0	504	40	0.987393073566096	0.0262336619569801	0.987393073566096	597.021525549611	0	15.86203235733						381	16	5	NaN	NaN	NaN	0.0013203	1	34007	54.912	53.288	1	102530			19923	495	16810	17297	19923	19923		
VANAESLNAIGVLIYMDQTK	20	Unmodified	_VANAESLNAIGVLIYMDQTK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1075.56173	2149.10891	0.73361	0.00078904	-0.84163	-0.00090522	-0.10801	-0.00011618	1076.06254457202	18.914	0.13299	18.914	18.878	19.011	0	108	91	1.25141139212444	0.0595186512666195	1.25141139212444	504.440637410338	0	23.9918116230091						656	16	5	NaN	NaN	NaN	3.3611E-11	1	34008	125.75	118.44	1	140620			19924	495	16810	17297	19924	19924		
VANHMDGFQR	10	Unmodified	_VANHMDGFQR_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	392.185585	1173.53493	-0.82467	-0.00032343	0.32281	0.0001266	-0.50186	-0.00019682	392.185731565906	3.439	0.1154	3.439	3.4124	3.5278	0	903	28	0.716455593386714	0.018502976221729	0.716455593386714	435.502364886216	0	11.2471588977421						122	14	3	NaN	NaN	NaN	0.061055	1	8691	14.763	5.9995	1	21324			19925	3043	16811	17298	19925	19925		
VANILHDDCAFLSAFGDVSKPER	23	Unmodified	_VANILHDDCAFLSAFGDVSKPER_			0	0	1	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	854.41995	2560.23802	1.6898	0.0014438	1.1034	0.00094273	2.7932	0.0023866	854.75511585791	15.296	0.14187	15.296	15.242	15.384	0	294	28	1.12800004657306	0.0179922103479333	1.12800004657306	681.33552948793	0	10.8676699095095						377	17	5	NaN	NaN	NaN	0.00055812	1	37067	48.201	48.166	1	119920			19926	2719	16812	17299	19926	19926		
VANPSGNLTETYVQDR	16	Unmodified	_VANPSGNLTETYVQDR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.431572	1762.84859	3.6149	0.0031899	-4.2192	-0.0037231	-0.60431	-0.00053326	882.428136425851	8.0059	0.21295	8.0059	7.8906	8.1036	0	345	100	1.09397730668811	0.0660714937390592	1.09397730668811	441.599301166461	0	26.6706862051125						1788	25	5	NaN	NaN	NaN	5.0756E-12	1	26218	169.05	140.72	1	795590			19927	792	16813	17300	19927	19927		
VANVELYYR	9	Unmodified	_VANVELYYR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.798206	1125.58186	1.5465	0.00087193	-0.61216	-0.00034514	0.93436	0.00052679	563.797688714484	8.3164	0.15966	8.3164	8.2632	8.4229	0	594	31	0.926715457081489	0.0202679123489945	0.926715457081489	375.729722651442	0	8.2174706674196						480	19	4	NaN	NaN	NaN	0.00033801	1	7410	74.486	53.398	1	274820			19928	1503	16814	17301	19928	19928		
VANVSLLALYK	11	Unmodified	_VANVSLLALYK_			0	0	0	P62266	P62266	P62266	RPS23	40S ribosomal protein S23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.860806	1189.70706	1.2802	0.00076281	0.15676	9.341E-05	1.437	0.00085622	595.860772354203	13.779	0.24831	13.779	13.726	13.974	0	522	94	0.975277694896658	0.0626611719432242	0.975277694896658	395.160933378054	0	25.3889198135213						992	29	5	NaN	NaN	NaN	0.00086114	1	9160	57.032	37.776	1	673900			19929	1377	16815	17302	19929	19929		
VAPADGFSDLAMQVMTSPSK	20	Unmodified	_VAPADGFSDLAMQVMTSPSK_			0	0	0	Q92896	Q92896	Q92896	GLG1	Golgi apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.49246	2050.97036	0.34593	0.0003551	2.0776	0.0021327	2.4236	0.0024878	1026.9961509523	17.184	0.17735	17.184	17.14	17.317	0	117	34	1.24546401832526	0.0218130181117815	1.24546401832526	502.197490767971	0	8.79547124656642						338	21	3	NaN	NaN	NaN	9.3916E-08	1	32556	84.266	83.646	1	64581			19930	2441	16816	17303	19930	19930		
VAPAEPQEAPDSTAAGGSASK	21	Unmodified	_VAPAEPQEAPDSTAAGGSASK_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.963433	1939.91231	3.9078	0.0037943	-3.3507	-0.0032534	0.55709	0.00054092	970.959958642145	4.2815	0.1064	4.2815	4.2371	4.3435	0	273	43	1.14198628764525	0.0279551776858049	1.14198628764525	460.650309482235	0	11.2764587385285						347	13	4	NaN	NaN	NaN	0.00032982	1	30503	48.201	36.992	1	98002			19931	1932	16817	17304	19931	19931		
VAPAPAAADAEVEQTDAESK	20	Unmodified	_VAPAPAAADAEVEQTDAESK_			0	0	0	O43823	O43823	O43823	AKAP8	A-kinase anchor protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.471091	1968.92763	2.3647	0.0023303	-0.60965	-0.00060079	1.755	0.0017295	985.972306854281	6.6047	0.088729	6.6047	6.5693	6.658	0	228	52	1.17191150690002	0.0338966093488604	1.17191150690002	472.67194330763	0	13.6716604608203						472	11	4	NaN	NaN	NaN	2.9018E-16	1	31093	127.62	122.81	1	128050			19932	237	16818	17305	19932	19932		
VAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR	33	Unmodified	_VAPAPAAVVPPTGPGMAPVPTGVFTDIPISNIR_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1070.58456	3208.73184	1.1084	0.0011866	-0.061283	-6.5608E-05	1.0471	0.001121	1070.91891662696	19.171	0.11527	19.171	19.144	19.259	0	309	106	1.11800162319566	0.0700083324538914	1.11800162319566	674.55885280466	0	42.2403147250167						797	14	5	NaN	NaN	NaN	0.030203	1	38468	6.2255	6.1387	1	129510			19933	626	16819	17306	19933	19933		
VAPAQPSEEGPGR	13	Unmodified	_VAPAQPSEEGPGR_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.822941	1293.63133	2.4491	0.0015866	-1.3996	-0.00090669	1.0495	0.00067988	647.822182218645	3.1552	0.30149	3.1552	3.0932	3.3947	0	606	61	0.918606045818476	0.0405639373344322	0.918606045818476	371.855856010679	0	16.4204641470861						701	35	4	NaN	NaN	NaN	2.3256E-05	1	12181	83.438	76.747	1	280360			19934	824	16820	17307	19934	19934		
VAPEEHPVLLTEAPLNPK	18	Unmodified	_VAPEEHPVLLTEAPLNPK_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.53584	1953.05713	2.8499	0.0027859	-0.12612	-0.00012329	2.7238	0.0026626	978.037186767963	10.551	0.4168	10.551	10.463	10.879	0	159	136	1.21767724410157	0.0894803825152781	1.21767724410157	491.158761617144	0	36.0925475762331						5036	48	6	NaN	NaN	NaN	6.9028E-26	1	30776	193.62	91.049	1	5586400			19935	1310;1436	16821	17308	19935	19935		
VAPEEHPVLLTEAPLNPK	18	Unmodified	_VAPEEHPVLLTEAPLNPK_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.026319	1953.05713	2.2248	0.0014506	2.3666	0.0015431	4.5914	0.0029937	652.362327043475	10.587	0.67393	10.587	10.445	11.119	0	555	250	0.953040030838688	0.16816678401209	0.953040030838688	576.621086788108	0	101.746527554964						9723	77	6	NaN	NaN	NaN	3.2247E-14	1	30777	222.48	74.762	1	18966000			19936	1310;1436	16821	17308	19936	19936		
VAPVLETSHVFCCPNR	16	Unmodified	_VAPVLETSHVFCCPNR_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.306434	1884.89747	0.6217	0.00039124	0.72221	0.00045449	1.3439	0.00084573	629.641422157568	9.6647	0.079807	9.6647	9.6204	9.7002	0	633	49	0.900343422309015	0.0325051879347241	0.900343422309015	544.876702156296	0	19.6717376569718						200	10	2	NaN	NaN	NaN	0.002651	1	29258	32.759	32.59	1	55673			19937	2035	16822	17309	19937	19937		
VAPVLETSHVFCCPNR	16	Unmodified	_VAPVLETSHVFCCPNR_			0	0	0	Q6IA86	Q6IA86	Q6IA86	ELP2	Elongator complex protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.456013	1884.89747	2.1504	0.0020288	0.26246	0.00024762	2.4128	0.0022764	943.957843248805	9.6558	0.079807	9.6558	9.6204	9.7002	0	213	31	1.18187287897418	0.0199186411818211	1.18187287897418	476.838427081752	0	8.03637489252588						247	10	4	NaN	NaN	NaN	0.052617	1	29259	44.598	40.615	1	44155			19938	2035	16822	17309	19938	19938		
VAPVPLYNSFHDVYK	15	Unmodified	_VAPVPLYNSFHDVYK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.953955	1747.89336	1.9699	0.0017235	-0.11965	-0.00010469	1.8502	0.0016188	875.456418409685	12.139	0.17737	12.139	12.068	12.245	0	219	148	1.17788915118882	0.0976083103688747	1.17788915118882	475.50322510406	0	39.4035944133743						1073	21	4	NaN	NaN	NaN	4.6697E-08	1	25841	101.64	95.616	1	344410			19939	1903	16823	17310	19939	19939		
VAQAPWK	7	Unmodified	_VAQAPWK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	400.226688	798.438824	-0.74679	-0.00029889	-0.849	-0.00033979	-1.5958	-0.00063868	400.226267741793	4.5829	0.20394	4.5829	4.512	4.7159	0	882	28	0.730840773481911	0.0184849145635965	0.730840773481911	297.778046780179	0	7.53160189383232						344	24	3	NaN	NaN	NaN	0.056691	1	977	31.058	17.506	1	112620			19940	922	16824	17311	19940	19940		
VAQGVSGAVQDK	12	Unmodified	_VAQGVSGAVQDK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.809302	1157.60405	1.6918	0.0009809	-0.25304	-0.00014671	1.4387	0.00083418	579.809084853529	3.1109	0.22164	3.1109	3.0755	3.2971	0	627	52	0.90440375274676	0.034500858375006	0.90440375274676	366.560859565527	0	13.9834274938397						437	26	4	NaN	NaN	NaN	7.3347E-09	1	8285	123.42	90.024	1	246680			19941	666	16825	17312	19941	19941		
VAQLEQVYIR	10	Unmodified	_VAQLEQVYIR_			0	0	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.845687	1217.67682	1.0386	0.0006334	-8.0282	-0.004896	-6.9896	-0.0042626	609.840511718944	9.2125	0.12413	9.2125	9.177	9.3011	0	495	76	0.993446994398923	0.0504912540500323	0.993446994398923	402.416755911198	0	20.452552346787						307	15	3	NaN	NaN	NaN	2.9295E-07	1	9964	125.98	113.38	1	69436			19942	1387	16826	17313	19942	19942		
VAQNLVGPDNVHVALSLVEYKPELQK	26	Unmodified	_VAQNLVGPDNVHVALSLVEYKPELQK_			0	0	1	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	715.894637	2859.54944	1.2027	0.00086103	0.0077194	5.5263E-06	1.2105	0.00086656	716.396509995918	15.207	0.2394	15.207	15.074	15.313	0	447	58	1.02569221487577	0.0382726935815298	1.02569221487577	825.584217728262	0	30.8058609908506						447	28	4	NaN	NaN	NaN	0.021691	1	38015	42.028	42.028	1	88696			19943	423	16827	17314	19943	19943		
VAQPTITDNK	10	Unmodified	_VAQPTITDNK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.793121	1085.57169	1.5012	0.00081637	-0.41361	-0.00022492	1.0876	0.00059145	543.793062946708	3.6696	0.25712	3.6696	3.581	3.8381	-4.4409E-16	663	49	0.880024865079826	0.032536775783098	0.880024865079826	356.958436133425	0	13.1976686809924						521	30	3	NaN	NaN	NaN	0.058723	1	6353	37.591	20.196	1	158280			19944	792	16828	17315	19944	19944		
VAQSIEDHHQEVIGFCR	17	Unmodified	_VAQSIEDHHQEVIGFCR_			0	0	0	Q9NZB2	Q9NZB2	Q9NZB2	FAM120A	Constitutive coactivator of PPAR-gamma-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.658412	2023.95341	1.2296	0.00083077	2.3062	0.0015582	3.5357	0.0023889	675.994156013983	6.8175	0.079792	6.8175	6.7909	6.8707	0	600	31	0.922661313351899	0.0202735302015807	0.922661313351899	558.103091891897	0	12.2631346143269						164	10	4	NaN	NaN	NaN	0.038922	1	32040	23.432	23.432	1	45803			19945	3129	16829	17316	19945	19945		
VAQWMIQQPHK	11	Unmodified	_VAQWMIQQPHK_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	455.908052	1364.70233	-0.861	-0.00039254	-1.2165	-0.00055461	-2.0775	-0.00094715	455.907480209623	6.9151	0.19504	6.9151	6.8353	7.0303	0	837	40	0.761618911097395	0.026655799678488	0.761618911097395	462.202171164133	0	16.1765527431052						521	23	4	NaN	NaN	NaN	0.027882	1	14341	49.96	43.697	1	184810			19946	1272	16830	17317	19946	19946		
VAQWMIQQPHK	11	Unmodified	_VAQWMIQQPHK_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	683.358439	1364.70233	1.9079	0.0013038	0.1815	0.00012403	2.0894	0.0014278	683.358761512891	6.9062	0.12413	6.9062	6.8441	6.9683	0	471	58	1.00957851518677	0.0383097280775055	1.00957851518677	408.456967610939	0	15.4994139882648						291	15	4	NaN	NaN	NaN	0.00087318	1	14344	72.038	56.159	1	65181			19947	1272	16830	17317	19947	19947		
VAQYMADVLEDSK	13	Unmodified	_VAQYMADVLEDSK_			0	0	0	P21283	P21283	P21283	ATP6V1C1	V-type proton ATPase subunit C 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.853049	1467.69155	1.477	0.0010854	1.3928	0.0010235	2.8698	0.0021089	734.853781013074	11.287	0.10645	11.287	11.252	11.358	0	444	49	1.02770517576159	0.0321918235731047	1.02770517576159	415.497969719896	0	13.0150530051519						221	13	3	NaN	NaN	NaN	0.0059311	1	17514	64.266	59.738	1	66145			19948	790	16831	17318	19948	19948		
VASLEESEGNK	11	Unmodified	_VASLEESEGNK_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.78295	1161.55135	1.6821	0.0009786	-1.9485	-0.0011336	-0.26648	-0.00015503	581.781640953218	2.9779	0.30149	2.9779	2.9247	3.2262	0	654	31	0.886123392477847	0.0203241961529822	0.886123392477847	359.137345300674	0	8.2372025315139						359	35	2	NaN	NaN	NaN	0.0063979	1	8374	41.796	33.613	1	129600			19949	1567	16832	17319	19949	19949		
VASMPLISSTCDMVSAAYASTK	22	Unmodified	_VASMPLISSTCDMVSAAYASTK_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	764.030307	2289.06909	0.35123	0.00026835	1.0939	0.0008358	1.4452	0.0011042	764.366212988814	17.335	0.23057	17.335	17.176	17.406	0	474	22	1.00756305028564	0.014108255116009	1.00756305028564	608.978133622871	0	8.52712777308261						258	27	3	NaN	NaN	NaN	0.039687	1	35552	11.766	11.331	1	47641			19950	272	16833	17320	19950	19950		
VASQGEVVR	9	Unmodified	_VASQGEVVR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.761623	943.508694	0.0053775	2.5423E-06	-0.2261	-0.00010689	-0.22072	-0.00010435	472.761727416931	2.4104	0.22172	2.4104	2.3661	2.5878	0	780	22	0.800512323802183	0.0143112053912641	0.800512323802183	325.31826275954	0	5.81589606736833						205	26	3	NaN	NaN	NaN	0.054965	1	3124	28.096	16.736	1	46850			19951	565	16834	17321	19951	19951		
VASSDLVNMGISVVSYTLK	19	Unmodified	_VASSDLVNMGISVVSYTLK_			0	0	0	O75955	O75955	O75955	FLOT1	Flotillin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.687086	1982.03943	-0.15363	-0.00010165	0.10806	7.1501E-05	-0.045568	-3.0152E-05	662.021659082482	19.889	0.017759	19.889	19.88	19.898	0	561	19	0.948993180460448	0.0121422325843117	0.948993180460448	574.113433044255	0	7.34569960810336						58	3	4	NaN	NaN	NaN	0.0037138	1	31323	47.27	45.56	1	11283			19952	373	16835	17322	19952	19952		
VATAQDDITGDGTTSNVLIIGELLK	25	Unmodified	_VATAQDDITGDGTTSNVLIIGELLK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1272.67379	2543.33303	-0.093544	-0.00011905	-0.056872	-7.238E-05	-0.15042	-0.00019143	1273.17590045119	19.171	0.053212	19.171	19.144	19.197	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.10178887516	0	9.56223478572605						209	7	4	NaN	NaN	NaN	0.020908	1	37002	45.459	44.517	1	40097			19953	1016	16836	17323	19953	19953		
VATAQDDITGDGTTSNVLIIGELLK	25	Unmodified	_VATAQDDITGDGTTSNVLIIGELLK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	848.784952	2543.33303	0.47747	0.00040527	-0.13617	-0.00011558	0.3413	0.00028969	849.119395238583	19.171	0.097512	19.171	19.135	19.233	0	399	43	1.0578662689527	0.028132878019673	1.0578662689527	638.996200333468	0	16.9934543586623						440	12	5	NaN	NaN	NaN	3.8106E-06	1	37003	104.3	99.705	1	159720			19954	1016	16836	17323	19954	19954		
VATFHDCEDAAR	12	Unmodified	_VATFHDCEDAAR_			0	0	0	Q9P2X0	Q9P2X0	Q9P2X0	DPM3	Dolichol-phosphate mannosyltransferase subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.538464	1390.59356	-0.64946	-0.0003017	1.9131	0.00088873	1.2637	0.00058703	464.539521096055	3.3947	0.12425	3.3947	3.3681	3.4923	-4.4409E-16	837	25	0.761618911097395	0.0164001382999108	0.761618911097395	462.115975240807	0	9.95086360661315						173	15	3	NaN	NaN	NaN	0.00048789	1	15155	62.271	60.768	1	41539			19955	3165	16837	17324	19955	19955		
VATGQELSNNILDTVFK	17	Unmodified	_VATGQELSNNILDTVFK_			0	0	0	Q8IYU8	Q8IYU8	Q8IYU8	MICU2	Calcium uptake protein 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.988723	1847.96289	1.556	0.0014393	-3.9667	-0.0036691	-2.4107	-0.0022299	925.486768665084	17.654	0.12413	17.654	17.575	17.699	0	264	61	1.14797626962532	0.0399030432867902	1.14797626962532	463.23014782386	0	16.1016330471662						533	15	4	NaN	NaN	NaN	0.023073	1	28437	49.967	39.717	1	135960			19956	2229	16838	17325	19956	19956		
VATLNSEEESDPPTYK	16	Unmodified	_VATLNSEEESDPPTYK_			0	0	0	Q00341	Q00341	Q00341	HDLBP	Vigilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.417796	1778.82104	2.9455	0.0026227	-1.903	-0.0016945	1.0425	0.00092829	890.416086178823	6.2855	0.1153	6.2855	6.25	6.3653	0	327	97	1.10599442759226	0.0640120085723384	1.10599442759226	446.418888693304	0	25.8375349974409						848	14	4	NaN	NaN	NaN	2.7566E-33	1	26640	222.48	189.94	1	237730			19957	1498	16839	17326	19957	19957		
VATPVDWK	8	Unmodified	_VATPVDWK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	458.25036	914.486168	-1.5601	-0.0007149	-0.94155	-0.00043147	-2.5016	-0.0011464	458.249629953518	7.2255	0.21281	7.2255	7.1457	7.3585	0	795	49	0.790287188799094	0.0327272734243672	0.790287188799094	321.309187615895	0	13.3060155673863						452	25	3	NaN	NaN	NaN	0.013463	1	2591	47.349	37.27	1	119030			19958	893	16840	17327	19958	19958		
VATQAVEDVLNIAK	14	Unmodified	_VATQAVEDVLNIAK_			0	0	0	Q4G0N4	Q4G0N4	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.911756	1469.80896	1.4701	0.0010819	0.49448	0.00036389	1.9646	0.0014458	735.912074440484	14.551	0.14187	14.551	14.506	14.648	0	381	40	1.06991323971056	0.0260927771036219	1.06991323971056	432.556741051587	0	10.5490858604399						386	17	4	NaN	NaN	NaN	4.7282E-08	1	17590	143.22	131.26	1	130730			19959	1941	16841	17328	19959	19959		
VATSSLDQTVK	11	Unmodified	_VATSSLDQTVK_			0	0	0	Q9BV38	Q9BV38	Q9BV38	WDR18	WD repeat-containing protein 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.81151	1147.60847	0.98554	0.0005665	-1.3291	-0.00076398	-0.34356	-0.00019748	574.810166083327	4.6627	0.070954	4.6627	4.6361	4.7071	0	627	22	0.90440375274676	0.0142121427273308	0.90440375274676	366.598450642555	0	5.76086674599333						85	9	2	NaN	NaN	NaN	0.052035	1	8008	41.824	30.464	1	49384			19960	2754	16842	17329	19960	19960		
VATTAGLYGSNLMEHTEIDHWLEFSATK	28	Unmodified	_VATTAGLYGSNLMEHTEIDHWLEFSATK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	781.128839	3120.48625	0.14363	0.00011219	0.13586	0.00010613	0.27949	0.00021832	781.379799659953	16.892	0.13305	16.892	16.847	16.98	0	483	46	1.00151498427745	0.0302486975418772	1.00151498427745	805.797689173438	0	24.3374597109359						577	16	6	NaN	NaN	NaN	0.071822	1	38385	1.0817	0	1	194630			19961	565	16843	17330	19961	19961		
VATTAGLYGSNLMEHTEIDHWLEFSATK	28	Unmodified	_VATTAGLYGSNLMEHTEIDHWLEFSATK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1041.16936	3120.48625	0.50709	0.00052797	3.4877	0.0036313	3.9948	0.0041592	1041.50826600387	16.892	0.15079	16.892	16.839	16.989	0	180	40	1.203763835057	0.0258569287367985	1.203763835057	726.393144762535	0	15.6029739655158						488	18	6	NaN	NaN	NaN	8.4836E-07	1	38386	73.012	72.171	1	119320			19962	565	16843	17330	19962	19962		
VATVSLPR	8	Unmodified	_VATVSLPR_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	421.758352	841.502152	-0.82859	-0.00034946	-0.56441	-0.00023805	-1.393	-0.00058751	421.758134547312	6.4629	0.41672	6.4629	6.321	6.7377	0	822	67	0.771863999559055	0.0450313492000831	0.771863999559055	314.22122428411	0	18.3319933108667						926	48	3	NaN	NaN	NaN	0.0050231	1	1450	51.43	9.2014	1	556550		+	19963	24	16844	17331	19963	19963		
VAVATPAK	8	Unmodified	_VAVATPAK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	378.734346	755.454139	0.1208	4.5753E-05	0.30848	0.00011683	0.42929	0.00016259	378.734381189043	2.7917	0.38129	2.7917	2.703	3.0843	0	876	31	0.734948245421186	0.0205344978621902	0.734948245421186	299.738776117649	0	8.37471930268509						483	44	3	NaN	NaN	NaN	0.011146	1	655	53.679	43.6	1	132590			19964	764	16845	17332	19964	19964		
VAVEYLDPSPEVQK	14	Unmodified	_VAVEYLDPSPEVQK_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.409046	1572.80354	2.5506	0.0020083	-1.5087	-0.0011879	1.0419	0.00082041	787.408161867296	9.8864	0.24823	9.8864	9.78	10.028	0	396	70	1.05987478976334	0.0461832661791177	1.05987478976334	428.236496805398	0	18.6600910886772						1311	29	5	NaN	NaN	NaN	9.2738E-05	1	20756	110.44	99.652	1	507330			19965	220	16846	17333	19965	19965		
VAVFFGGLSIK	11	Unmodified	_VAVFFGGLSIK_			0	0	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.336967	1136.65938	0.67182	0.00038249	-1.6235	-0.00092432	-0.95169	-0.00054183	569.336052851957	15.766	0.23055	15.766	15.712	15.943	0	621	82	0.908462957275599	0.0547423659121806	0.908462957275599	368.285956092675	0	22.192258261364						1006	27	4	NaN	NaN	NaN	0.00065075	1	7718	102.55	88.551	1	519920			19966	1705	16847	17334	19966	19966		
VAVHHAEAEALAR	13	Unmodified	_VAVHHAEAEALAR_			0	0	0	Q68D91	Q68D91	Q68D91	MBLAC2	Metallo-beta-lactamase domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.36785	1372.72115	2.344	0.0016112	-1.1557	-0.00079437	1.1883	0.00081683	687.367020074496	3.0755	0.035473	3.0755	3.0666	3.102	0	459	19	1.01763759082241	0.012085274363222	1.01763759082241	411.693409011461	0	4.88919419477503						43	5	2	NaN	NaN	NaN	0.001437	1	14580	55.754	46.777	1	6666.8			19967	2023	16848	17335	19967	19967		
VAVLGASGGIGQPLSLLLK	19	Unmodified	_VAVLGASGGIGQPLSLLLK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.048387	1792.08222	1.4628	0.0013122	1.2724	0.0011414	2.7351	0.0024535	897.551155004025	19.073	0.24827	19.073	19.011	19.259	0	264	145	1.14797626962532	0.0956885739342372	1.14797626962532	463.337727658245	0	38.6211175114428						2550	29	6	NaN	NaN	NaN	2.455E-07	1	27037	123.24	110.56	1	2017300			19968	1023	16849	17336	19968	19968		
VAVLISGTGSNLQALIDSTR	20	Unmodified	_VAVLISGTGSNLQALIDSTR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.06021	2014.10587	0.47771	0.00048156	0.81964	0.00082624	1.2973	0.0013078	1008.56303798595	17.335	0.13299	17.335	17.282	17.415	0	141	34	1.2295923935727	0.0218369546358563	1.2295923935727	495.858733996826	0	8.80620662317205						373	16	4	NaN	NaN	NaN	6.193E-12	1	31879	171.14	157.36	1	118320			19969	801	16850	17337	19969	19969		
VAVNDAHLLQYNHR	14	Unmodified	_VAVNDAHLLQYNHR_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.42897	1648.84339	2.7665	0.0022835	-1.6829	-0.0013891	1.0835	0.00089439	825.427164708458	6.3476	0.15072	6.3476	6.3121	6.4629	0	306	67	1.12000185836644	0.0440324695840966	1.12000185836644	452.348317961459	0	17.783911163421						479	18	4	NaN	NaN	NaN	2.6296E-11	1	22999	138.71	114.02	1	147480			19970	745	16851	17338	19970	19970		
VAVNDAHLLQYNHR	14	Unmodified	_VAVNDAHLLQYNHR_			0	0	0	P17931	P17931	P17931	LGALS3	Galectin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.621739	1648.84339	0.33571	0.00018485	1.6126	0.00088792	1.9483	0.0010728	550.622725705321	6.3476	0.19507	6.3476	6.3033	6.4983	0	702	49	0.853568545818287	0.0325910336061924	0.853568545818287	517.108500555181	0	19.7442848640648						675	23	5	NaN	NaN	NaN	7.3808E-08	1	23001	147.78	135.82	1	436580			19971	745	16851	17338	19971	19971		
VAVQGDVVR	9	Unmodified	_VAVQGDVVR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.771991	941.529429	0.35432	0.00016716	-0.083923	-3.9592E-05	0.2704	0.00012757	471.772082454903	4.379	0.10641	4.379	4.3258	4.4322	0	759	37	0.814815566123307	0.024507911533163	0.814815566123307	331.140915575791	0	9.96001132201479						335	13	4	NaN	NaN	NaN	0.049468	1	3088	33.426	19.778	1	305470			19972	565	16852	17339	19972	19972		
VAVTEGCQPSR	11	Unmodified	_VAVTEGCQPSR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.292962	1202.57137	1.4205	0.00085556	-1.1035	-0.00066466	0.31697	0.00019091	602.293307047895	3.0843	0.14187	3.0843	3.04	3.1818	0	648	31	0.890187667287968	0.0203157386472897	0.890187667287968	360.640107191924	0	8.23047817070193						193	17	3	NaN	NaN	NaN	0.0050639	1	9532	78.932	58.698	1	34242			19973	326	16853	17340	19973	19973		
VAVVAGYGDVGK	12	Unmodified	_VAVVAGYGDVGK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.811313	1133.60807	1.0955	0.00062202	-0.67886	-0.00038547	0.4166	0.00023655	567.811835806633	7.0747	0.31045	7.0747	7.0214	7.3319	0	627	73	0.90440375274676	0.0486834828288254	0.90440375274676	366.65219922081	0	19.7366563226939						1081	36	4	NaN	NaN	NaN	0.00024311	1	7637	76.85	44.898	1	607180			19974	822	16854	17341	19974	19974		
VAVVLMDTQGAFDSQSTVK	19	Unmodified	_VAVVLMDTQGAFDSQSTVK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.506422	1994.99829	0.30958	0.00030911	-0.68855	-0.00068752	-0.37897	-0.0003784	999.007008393159	13.283	0.097534	13.283	13.247	13.345	0	60	34	1.28308947459206	0.0217593046214073	1.28308947459206	517.466473876134	0	8.77546800858624						225	12	3	NaN	NaN	NaN	1.9554E-19	1	31543	124.62	116.25	1	42436			19975	2029	16855	17342	19975	19975		
VAVVLMDTQGAFDSQSTVK	19	Unmodified	_VAVVLMDTQGAFDSQSTVK_			0	0	0	Q6DD88	Q6DD88	Q6DD88	ATL3	Atlastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.506422	1994.99829	1.8312	0.0018284	7.1981	0.0071873	9.0292	0.0090157	999.517437478055	13.283	0.17739	13.283	13.221	13.398	0	210	79	1.18386433251387	0.051781389209637	1.18386433251387	477.449219564952	0	20.8832914271793						1128	21	5	NaN	NaN	NaN	0.022272	1	31546	34.338	33.771	1	242110			19976	2029	16855	17342	19976	19976		
VAWVSHDSTVCLADADK	17	Unmodified	_VAWVSHDSTVCLADADK_			0	0	0	O15143	O15143	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.296481	1872.86761	0.83949	0.00052493	-0.36266	-0.00022677	0.47683	0.00029816	625.295689054241	8.973	0.097557	8.973	8.9287	9.0262	0	615	46	0.912521036363781	0.0304461528019007	0.912521036363781	552.272337914902	0	18.4264990267214						422	12	5	NaN	NaN	NaN	0.00010905	1	28998	54.556	44.535	1	135240			19977	147	16856	17343	19977	19977		
VAWVSHDSTVCLADADK	17	Unmodified	_VAWVSHDSTVCLADADK_			0	0	0	O15143	O15143	O15143	ARPC1B	Actin-related protein 2/3 complex subunit 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.441083	1872.86761	1.9961	0.0018712	-0.25835	-0.00024219	1.7378	0.001629	937.942378643254	8.973	0.079838	8.973	8.9464	9.0262	0	234	46	1.16792504164217	0.0299087706952383	1.16792504164217	471.233148921665	0	12.0675588694255						303	10	4	NaN	NaN	NaN	0.00012593	1	28999	61.067	58.351	1	73863			19978	147	16856	17343	19978	19978		
VCADLIR	7	Unmodified	_VCADLIR_			0	0	0	P60866	P60866	P60866	RPS20	40S ribosomal protein S20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.728738	845.442923	-0.43273	-0.00018336	0.39996	0.00016948	-0.032768	-1.3885E-05	423.729234858805	5.8509	0.337	5.8509	5.7889	6.1259	0	747	49	0.822982596624503	0.0326635887437258	0.822982596624503	335.006255587579	0	13.2961579065819						659	39	4	NaN	NaN	NaN	0.0047409	1	1499	96.666	65.608	1	742970			19979	1312	16857	17344	19979	19979		
VCAHITNIPFSITK	14	Unmodified	_VCAHITNIPFSITK_			0	0	0	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.288709	1599.8443	-1.4583	-0.00077915	-1.0897	-0.00058221	-2.548	-0.0013614	534.288083472774	11.385	0.14193	11.385	11.314	11.456	0	786	37	0.796423123669906	0.0245352049516095	0.796423123669906	482.611663123905	0	14.8676949662375						424	17	4	NaN	NaN	NaN	0.017316	1	21582	40.861	33.303	1	116480			19980	3047	16858	17345	19980	19980		
VCALLSCTSHK	11	Unmodified	_VCALLSCTSHK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	425.877652	1274.61113	-0.66565	-0.00028349	-0.32024	-0.00013638	-0.98589	-0.00041987	425.877767509319	4.6539	0.23055	4.6539	4.5741	4.8046	0	840	28	0.759569036796863	0.0184488704959693	0.759569036796863	461.28423799482	0	11.2039495507692						386	27	5	NaN	NaN	NaN	0.00474	1	11613	43.272	36.122	1	102250			19981	708	16859	17346	19981	19981		
VCALLSCTSHK	11	Unmodified	_VCALLSCTSHK_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.31284	1274.61113	2.1635	0.001381	-0.057792	-3.6889E-05	2.1057	0.0013441	638.312907862792	4.6539	0.19509	4.6539	4.6184	4.8135	0	522	55	0.975277694896658	0.0363763278490683	0.975277694896658	394.85902593534	0	14.7276221498224						300	23	2	NaN	NaN	NaN	0.013276	1	11614	47.561	32.413	1	111580			19982	708	16859	17346	19982	19982		
VCCEGMLIQLR	11	Unmodified	_VCCEGMLIQLR_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.835625	1377.6567	0.21776	0.00015022	2.1949	0.0015141	2.4127	0.0016643	689.836486897282	11.944	0.15075	11.944	11.882	12.032	0	480	49	1.00353128488872	0.0322630489708209	1.00353128488872	405.972074568365	0	13.051807272792						360	18	4	NaN	NaN	NaN	0.037915	1	14729	39.01	31.009	1	102900			19983	2468	16860	17347	19983	19983		
VCDIAAELAR	10	Unmodified	_VCDIAAELAR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.287148	1116.55974	0.27495	0.00015378	2.4547	0.0013729	2.7296	0.0015267	559.287654534296	9.3721	0.21284	9.3721	9.2568	9.4696	0	633	64	0.900343422309015	0.0426187151879737	0.900343422309015	365.073053273485	0	17.2811219527369						690	25	3	NaN	NaN	NaN	0.0042445	1	7174	65.404	55.89	1	285160			19984	74	16861	17348	19984	19984		
VCEALEHGHVEWSSR	15	Unmodified	_VCEALEHGHVEWSSR_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.412659	1794.81077	2.5813	0.0023191	-1.8362	-0.0016497	0.74511	0.00066941	898.913232620856	5.9485	0.053257	5.9485	5.9307	5.984	0	276	22	1.13998907770044	0.013980470407166	1.13998907770044	460.108636067254	0	5.6426287728961						100	7	3	NaN	NaN	NaN	0.010834	1	27088	44.82	43.768	1	18725			19985	2254	16862	17349	19985	19985		
VCEALEHGHVEWSSR	15	Unmodified	_VCEALEHGHVEWSSR_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.277532	1794.81077	0.51274	0.00030727	0.71673	0.00042952	1.2295	0.0007368	599.277946541267	5.9485	0.079871	5.9485	5.9219	6.0017	0	660	31	0.882057989648486	0.0203326589411038	0.882057989648486	534.006096953334	0	12.3095805142575						207	10	4	NaN	NaN	NaN	2.5768E-05	1	27089	106.11	86.789	1	54188			19986	2254	16862	17349	19986	19986		
VCEDLDTSVNLAWTSGTNCTR	21	Unmodified	_VCEDLDTSVNLAWTSGTNCTR_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1200.03374	2398.05292	0.57961	0.00069555	-0.36522	-0.00043828	0.21438	0.00025727	1200.53454806256	13.336	0.044338	13.336	13.309	13.354	0	66	40	1.27913350869533	0.0257225849725	1.27913350869533	515.271473193978	0	10.3617911367642						160	6	4	NaN	NaN	NaN	1.2332E-05	1	36330	54.813	53.189	1	24786			19987	1070	16863	17350	19987	19987		
VCEEIAIIPSK	11	Unmodified	_VCEEIAIIPSK_			0	0	0	P08708	P08708	P08708	RPS17	40S ribosomal protein S17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.839213	1257.66387	1.9649	0.0012376	-0.98332	-0.00061934	0.9816	0.00061825	629.839521494311	10.126	0.25715	10.126	10.019	10.277	0	564	79	0.946969335010767	0.0525945332540456	0.946969335010767	383.453245833397	0	21.2969351210586						1785	30	6	NaN	NaN	NaN	0.0023024	1	11150	81.335	58.282	1	1202000			19988	589	16864	17351	19988	19988		
VCEHLNLLEK	10	Unmodified	_VCEHLNLLEK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.82918	1253.64381	1.3989	0.00087829	0.84194	0.0005286	2.2409	0.0014069	627.829971098906	7.0925	0.13311	7.0925	7.0569	7.19	0	525	40	0.973257487423603	0.0262699700789047	0.973257487423603	394.111739020389	0	10.6377846824666						311	16	4	NaN	NaN	NaN	0.00025201	1	11032	94.66	54.157	1	92234			19989	206	16865	17352	19989	19989		
VCENIPIVLCGNK	13	Unmodified	_VCENIPIVLCGNK_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.386536	1514.75852	2.2534	0.001709	-0.4125	-0.00031284	1.8409	0.0013961	758.387021130596	11.35	0.38142	11.35	11.243	11.624	0	465	88	1.01360860968299	0.0583920494477788	1.01360860968299	409.679837414496	0	23.6008702920813						2325	44	6	NaN	NaN	NaN	1.3551E-12	1	18970	164.31	132.5	1	2303200			19990	1399	16866	17353	19990	19990		
VCEVCSAYLGLHDNDR	16	Unmodified	_VCEVCSAYLGLHDNDR_			0	0	0	Q9Y383;Q9NQ29	Q9Y383;Q9NQ29	Q9Y383	LUC7L2;LUC7L	Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.617337	1906.83018	1.3359	0.00085046	2.1974	0.0013989	3.5333	0.0022494	637.289543271497	8.3963	0.11527	8.3963	8.352	8.4672	0	564	28	0.946969335010767	0.0182171330553085	0.946969335010767	573.046005386506	0	11.0238578388817						286	14	5	NaN	NaN	NaN	0.041216	1	29732	22.395	19.679	1	86582			19991	3372;2995	16867	17354	19991	19991		
VCFGDFPTMPK	11	Unmodified	_VCFGDFPTMPK_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.799034	1297.58352	0.97494	0.00063352	0.77543	0.00050387	1.7504	0.0011374	649.799526191609	13.203	0.14188	13.203	13.132	13.274	0	543	58	0.961130371139249	0.0383945804732124	0.961130371139249	389.057364552574	0	15.5417982206761						565	17	3	NaN	NaN	NaN	0.033186	1	12279	19.324	17.524	1	134090			19992	2691	16868	17355	19992	19992		
VCFVGDGFTR	10	Unmodified	_VCFVGDGFTR_			0	0	0	O95478	O95478	O95478	NSA2	Ribosome biogenesis protein NSA2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.274041	1156.53353	0.74654	0.00043245	1.005	0.00058217	1.7516	0.0010146	579.274798016022	9.8598	0.15959	9.8598	9.8066	9.9662	0	615	52	0.912521036363781	0.034500858375006	0.912521036363781	369.854873651349	0	13.983579672857						287	19	3	NaN	NaN	NaN	0.0019572	1	8238	56.378	36.891	1	67900			19993	438	16869	17356	19993	19993		
VCHAHPTLSEAFR	13	Unmodified	_VCHAHPTLSEAFR_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.872442	1523.73033	3.0714	0.0023431	-3.3751	-0.0025748	-0.30372	-0.0002317	762.869884737163	4.9731	0.15958	4.9731	4.9287	5.0883	0	408	46	1.0518390438467	0.0301444498017385	1.0518390438467	425.109139791012	0	12.18311984106						433	19	4	NaN	NaN	NaN	0.0012169	1	19228	43.168	40.689	1	101030			19994	607	16870	17357	19994	19994		
VCHAHPTLSEAFR	13	Unmodified	_VCHAHPTLSEAFR_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	508.917387	1523.73033	1.374	0.00069926	0.62822	0.00031971	2.0022	0.001019	509.252595744906	4.9731	0.22164	4.9731	4.911	5.1327	0	678	76	0.869855008346864	0.0508705016411977	0.869855008346864	527.335104944585	0	30.8393939957032						909	26	5	NaN	NaN	NaN	0.0031625	1	19230	74.849	65.106	1	371370			19995	607	16870	17357	19995	19995		
VCIESEHSMDTLLATLK	17	Unmodified	_VCIESEHSMDTLLATLK_			0	0	0	O00244	O00244	O00244	ATOX1	Copper transport protein ATOX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.656909	1945.9489	0.74751	0.00048562	-1.2078	-0.00078466	-0.4603	-0.00029904	649.656575975246	14.639	0.13303	14.639	14.586	14.719	0	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	559.481896798332	0	11.0390666672357						426	16	6	NaN	NaN	NaN	1.4473E-10	1	30642	96.313	77.501	1	188810			19996	66	16871	17358	19996	19996		
VCIESEHSMDTLLATLK	17	Unmodified	_VCIESEHSMDTLLATLK_			0	0	0	O00244	O00244	O00244	ATOX1	Copper transport protein ATOX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.981726	1945.9489	1.3209	0.0012865	-0.74566	-0.00072626	0.5752	0.00056023	974.483143327106	14.631	0.11529	14.631	14.586	14.701	0	108	49	1.25141139212444	0.0317258572257677	1.25141139212444	504.778681404755	0	12.7971796306503						499	14	5	NaN	NaN	NaN	0.0014612	1	30643	59.67	56.955	1	138170			19997	66	16871	17358	19997	19997		
VCLDIIYK	8	Unmodified	_VCLDIIYK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.280803	1022.54705	0.52581	0.00026936	-0.7787	-0.00039891	-0.25289	-0.00012955	512.280484985599	11.447	0.23064	11.447	11.394	11.624	0	642	46	0.894250814548268	0.030475726379646	0.894250814548268	363.008848285111	0	12.3712029709651						543	27	4	NaN	NaN	NaN	0.053079	1	4807	41.025	31.632	1	263710			19998	1465	16872	17359	19998	19998		
VCLLGCGISTGYGAAVNTAK	20	Unmodified	_VCLLGCGISTGYGAAVNTAK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1006.50062	2010.98668	2.2121	0.0022265	-1.0504	-0.0010572	1.1617	0.0011692	1007.00100723401	12.813	0.11528	12.813	12.76	12.875	0	165	52	1.21370334790578	0.0337943541860266	1.21370334790578	489.45634852311	0	13.6284218290492						468	14	4	NaN	NaN	NaN	1.2224E-10	1	31820	98.895	85.036	1	105760			19999	658	16873	17360	19999	19999		
VCLNLPYFLR	10	Unmodified	_VCLNLPYFLR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.852458	1293.69036	0.14895	9.6496E-05	-1.316	-0.00085257	-1.167	-0.00075608	647.851951640104	17.202	0.097569	17.202	17.167	17.264	0	543	40	0.961130371139249	0.0262845144362098	0.961130371139249	389.069706098667	0	10.640084439867						323	12	4	NaN	NaN	NaN	0.00040128	1	12189	85.813	72.165	1	72862			20000	1991	16874	17361	20000	20000		
VCMDFNIIR	9	Unmodified	_VCMDFNIIR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.286094	1166.55763	0.33539	0.00019596	-2.0277	-0.0011847	-1.6923	-0.00098879	584.285585297943	13.247	0.22172	13.247	13.185	13.407	0	621	46	0.908462957275599	0.0304377111147065	0.908462957275599	368.172815747807	0	12.3354922908763						646	26	5	NaN	NaN	NaN	6.9672E-05	1	8501	130	113.45	1	380600			20001	1036	16875	17362	20001	20001		
VCMVYDLYK	9	Unmodified	_VCMVYDLYK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.782853	1189.55115	1.4314	0.00085281	1.2521	0.00074596	2.6835	0.0015988	595.783863156646	11.057	0.1685	11.057	11.012	11.181	0	570	37	0.942920803299286	0.0242945584092671	0.942920803299286	382.051206379158	0	9.84363195321652						550	20	5	NaN	NaN	NaN	0.0062155	1	9140	51.864	46.957	1	298620			20002	929	16876	17363	20002	20002		
VCNDEQLLLELQQIK	15	Unmodified	_VCNDEQLLLELQQIK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.985126	1841.9557	1.3505	0.0012451	-0.57086	-0.00052632	0.77961	0.00071879	922.48606251442	16.253	0.12412	16.253	16.2	16.324	0	258	31	1.15196821829984	0.0199597456368612	1.15196821829984	464.85225718362	0	8.05433054897946						283	15	3	NaN	NaN	NaN	0.00014808	1	28286	93.772	82.29	1	83353			20003	2149	16877	17364	20003	20003		
VCNPIITK	8	Unmodified	_VCNPIITK_			0	0	0	P11142	P11142	P11142	HSPA8	Heat shock cognate 71 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.76532	943.516088	-0.424	-0.00020045	1.233	0.00058291	0.80898	0.00038246	472.76615012951	5.2568	0.39901	5.2568	5.1238	5.5228	0	774	70	0.804600385996946	0.0469898572272448	0.804600385996946	326.979556795082	0	19.0960916219185						1928	46	5	NaN	NaN	NaN	0.0015951	1	3127	102.46	76.241	1	3650800			20004	640	16878	17365	20004	20004		
VCNYGLTFTQK	11	Unmodified	_VCNYGLTFTQK_			0	0	0	Q9Y277	Q9Y277	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.826637	1329.63872	1.52	0.001012	-3.0085	-0.0020031	-1.4885	-0.0009911	665.824835584144	9.0972	0.30152	9.0972	8.973	9.2745	0	537	64	0.965173861991602	0.0424302486818954	0.965173861991602	390.594915542982	0	17.1710404239241						882	35	3	NaN	NaN	NaN	0.00027972	1	13268	97.277	58.267	1	440190			20005	3334	16879	17366	20005	20005		
VCNYVNWIQQTIAAN	15	Unmodified	_VCNYVNWIQQTIAAN_			0	0	0	CON__P00761	CON__P00761	CON__P00761			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.435603	1792.85665	1.5643	0.0014039	0.7033	0.00063117	2.2676	0.002035	897.436758618733	19.091	0.21281	19.091	19.046	19.259	0	315	121	1.11400032671325	0.0800591414788208	1.11400032671325	449.623118471759	0	32.312774054639						2040	25	6	NaN	NaN	NaN	1.5892E-43	1	27045	228.06	205.11	1	2185100		+	20006	24	16880	17367	20006	20006		
VCPPHMLPEDGANLSSAR	18	Unmodified	_VCPPHMLPEDGANLSSAR_			0	0	0	Q9GZY8	Q9GZY8	Q9GZY8	MFF	Mitochondrial fission factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	650.976865	1949.90877	0.68404	0.0004453	0.27546	0.00017932	0.95951	0.00062462	651.311543756411	8.6623	0.13312	8.6623	8.5736	8.7068	0	636	28	0.898312834727904	0.0182778248645526	0.898312834727904	543.515496694481	0	11.0588212432266						266	16	4	NaN	NaN	NaN	0.0011224	1	30711	51.829	43.864	1	49205			20007	2835	16881	17368	20007	20007		
VCPQIDADNATDNK	14	Unmodified	_VCPQIDADNATDNK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.851569	1559.68859	2.531	0.0019763	-2.8167	-0.0021995	-0.28574	-0.00022312	780.849382769541	4.778	0.18621	4.778	4.7159	4.9021	0	438	40	1.03173026378327	0.0261612711685622	1.03173026378327	416.895454058209	0	10.5710915007613						387	22	4	NaN	NaN	NaN	0.0070948	1	20331	32.759	30.088	1	83962			20008	2140	16882	17369	20008	20008		
VCPTTETIYNDEFYTK	16	Unmodified	_VCPTTETIYNDEFYTK_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.948406	1979.88226	2.4236	0.0024016	-0.88455	-0.00087654	1.539	0.0015251	990.947607603265	10.915	0.088674	10.915	10.879	10.968	0	213	40	1.18187287897418	0.0258960141762798	1.18187287897418	476.671243219934	0	10.4443426120094						276	11	4	NaN	NaN	NaN	2.3297E-06	1	31277	84.102	81.387	1	53755			20009	3	16883	17370	20009	20009		
VCSTLLGLEEHLNALDR	17	Unmodified	_VCSTLLGLEEHLNALDR_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.335047	1938.98331	0.6603	0.00042743	-0.48814	-0.00031599	0.17216	0.00011145	647.668919438038	15.26	0.13298	15.26	15.216	15.349	0	561	49	0.948993180460448	0.0323748127993709	0.948993180460448	574.201992827444	0	19.5888468005583						363	16	4	NaN	NaN	NaN	0.00032951	1	30489	80.815	73.608	1	106360			20010	1932	16884	17371	20010	20010		
VCSTLLGLEEHLNALDR	17	Unmodified	_VCSTLLGLEEHLNALDR_			0	0	0	Q3LXA3	Q3LXA3	Q3LXA3	DAK	Bifunctional ATP-dependent dihydroxyacetone kinase/FAD-AMP lyase (cyclizing);ATP-dependent dihydroxyacetone kinase;FAD-AMP lyase (cyclizing)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.498932	1938.98331	0.59701	0.00057939	1.5383	0.001493	2.1354	0.0020724	971.001947541258	15.269	0.062059	15.269	15.234	15.296	0	72	49	1.27517645957152	0.0316694077427442	1.27517645957152	514.377813194675	0	12.7747344907519						216	8	3	NaN	NaN	NaN	6.5228E-05	1	30491	59.67	55.599	1	40178			20011	1932	16884	17371	20011	20011		
VCTLAIIDPGDSDIIR	16	Unmodified	_VCTLAIIDPGDSDIIR_			0	0	0	P62888	P62888	P62888	RPL30	60S ribosomal protein L30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.458744	1756.90294	3.0142	0.0026508	-0.080058	-7.0408E-05	2.9341	0.0025804	879.459266446446	15.429	0.28387	15.429	15.34	15.624	0	327	52	1.10599442759226	0.0340414857493967	1.10599442759226	446.461956140595	0	13.7416861590291						1103	33	6	NaN	NaN	NaN	2.297E-12	1	26071	150.44	124.86	1	1583700			20012	1411	16885	17372	20012	20012		
VCVEHHTFFR	10	Unmodified	_VCVEHHTFFR_			0	0	0	P11171	P11171	P11171	EPB41	Protein 4.1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.548635	1330.62407	-0.97899	-0.00043521	0.80168	0.00035639	-0.17731	-7.8823E-05	444.548860295086	5.044	0.088647	5.044	4.9997	5.0883	0	786	19	0.796423123669906	0.0122693083129709	0.796423123669906	483.447648145049	0	7.44775995571257						101	11	2	NaN	NaN	NaN	0.051229	1	13305	25.254	21.361	1	31530			20013	642	16886	17373	20013	20013		
VCVEHHTFYR	10	Unmodified	_VCVEHHTFYR_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.880273	1346.61899	-0.3571	-0.00016065	2.2744	0.0010232	1.9173	0.00086254	450.21559146486	3.6519	0.13297	3.6519	3.6076	3.7406	0	777	22	0.802556497112065	0.0143092140004129	0.802556497112065	487.111349972547	0	8.68497180431376						220	16	4	NaN	NaN	NaN	0.0044058	1	13795	69.716	62.565	1	59638			20014	206	16887	17374	20014	20014		
VCVIDEIGK	9	Unmodified	_VCVIDEIGK_			0	0	0	Q9BSD7	Q9BSD7	Q9BSD7	NTPCR	Cancer-related nucleoside-triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.773342	1031.53213	0.49703	0.00025685	-3.4985	-0.0018079	-3.0015	-0.0015511	516.774836513891	8.9109	0.21296	8.9109	8.8133	9.0262	0	693	79	0.85967808974117	0.052916344363654	0.85967808974117	348.934164288559	0	21.4781795861477						791	25	3	NaN	NaN	NaN	0.0089454	1	5037	67.464	52.929	1	252890			20015	2722	16888	17375	20015	20015		
VCYYYDGDIGNYYYGQGHPMK	21	Unmodified	_VCYYYDGDIGNYYYGQGHPMK_			0	0	0	Q92769	Q92769	Q92769	HDAC2	Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	855.027954	2562.06203	2.3194	0.0019832	-0.43603	-0.00037282	1.8834	0.0016104	855.363232670532	11.287	0.0798	11.287	11.252	11.332	0	375	43	1.07392668217569	0.0280824869885468	1.07392668217569	648.671602889244	0	16.96234216946						425	10	5	NaN	NaN	NaN	0.0075124	1	37075	32.61	30.424	1	115370			20016	2431	16889	17376	20016	20016		
VCYYYDGDVGNYYYGQGHPMK	21	Unmodified	_VCYYYDGDVGNYYYGQGHPMK_			0	0	0	Q13547	Q13547	Q13547	HDAC1	Histone deacetylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	850.35607	2548.04638	2.07	0.0017602	0.4305	0.00036608	2.5005	0.0021263	850.690550225269	10.41	0.088651	10.41	10.374	10.463	0	366	55	1.07994477139643	0.0361259765549562	1.07994477139643	652.325994850254	0	21.8214062610598						495	11	4	NaN	NaN	NaN	1.5803E-06	1	37015	101.43	100.49	1	104320			20017	1682	16890	17377	20017	20017		
VDAFLGTWK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VDAFLGTWK_			1	0	0	P05413	P05413	P05413	FABP3	Fatty acid-binding protein, heart	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	539.782025	1077.5495	-0.37038	-0.00019992	0.31609	0.00017062	-0.054288	-2.9303E-05	539.782154142173	19.463	0.11523	19.463	19.419	19.534	0	684	34	0.86578508874114	0.0223861150035557	0.86578508874114	351.215213397879	0	9.08117298434331						297	14	4	NaN	NaN	NaN	0.00060177	1	6150	83.623	68.042	1	150130			20018	531	16891	17378	20018	20018		
VDALSPQLQQLACECYSR	18	Unmodified	_VDALSPQLQQLACECYSR_			0	0	0	Q8IZL8	Q8IZL8	Q8IZL8	PELP1	Proline-, glutamic acid- and leucine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.50389	2136.99322	1.9377	0.0020724	-2.3801	-0.0025456	-0.44245	-0.00047321	1070.00327001123	13.584	0.10643	13.584	13.54	13.646	0	159	40	1.21767724410157	0.0258321022391843	1.21767724410157	490.860365910948	0	10.413231600407						232	13	2	NaN	NaN	NaN	0.00044583	1	33834	47.844	45.603	1	68487			20019	2232	16892	17379	20019	20019		
VDAQFGGIDQR	11	Unmodified	_VDAQFGGIDQR_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.299101	1204.58365	1.318	0.00079514	1.6916	0.0010205	3.0096	0.0018157	603.299826131613	6.986	0.25722	6.986	6.8885	7.1457	0	579	52	0.936845902828289	0.034438755237733	0.936845902828289	379.535468170965	0	13.9518452852474						893	30	5	NaN	NaN	NaN	7.8216E-08	1	9593	142.71	104.99	1	386060			20020	1251	16893	17380	20020	20020		
VDATAETDLAK	11	Unmodified	_VDATAETDLAK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.287868	1132.56118	2.6247	0.0014889	-1.589	-0.00090143	1.0356	0.0005875	567.287795644522	5.0706	0.58523	5.0706	4.7159	5.3012	0	603	85	0.920633820089869	0.056781667722799	0.920633820089869	373.236142128771	0	23.0199783475546						1237	67	4	NaN	NaN	NaN	7.7686E-05	1	7603	72.365	17.13	1	717930			20021	680	16894	17381	20021	20021		
VDATEESDLAQQYGVR	16	Unmodified	_VDATEESDLAQQYGVR_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.283117	1779.82752	1.0223	0.00060753	0.54725	0.00032522	1.5695	0.00093275	594.283128640312	9.7977	0.14187	9.7977	9.7534	9.8952	0	669	43	0.875957769340875	0.0284736285227984	0.875957769340875	530.347156195774	0	17.2393104350269						454	17	5	NaN	NaN	NaN	3.948E-09	1	26666	177.47	167.22	1	220860			20022	554	16895	17382	20022	20022		
VDATEESDLAQQYGVR	16	Unmodified	_VDATEESDLAQQYGVR_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.921037	1779.82752	3.7397	0.0033318	-1.7699	-0.0015769	1.9698	0.0017549	890.919242365262	9.7889	0.35466	9.7889	9.7179	10.073	0	351	85	1.08996939197032	0.0561417942199354	1.08996939197032	439.948686676205	0	22.6607359955838						1636	41	5	NaN	NaN	NaN	3.2792E-102	1	26667	343.61	322.99	1	1184400			20023	554	16895	17382	20023	20023		
VDAVHADVYR	10	Unmodified	_VDAVHADVYR_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	382.196367	1143.56727	-0.78898	-0.00030154	0.32887	0.00012569	-0.4601	-0.00017585	382.196569098246	4.3701	0.070945	4.3701	4.3524	4.4233	0	810	19	0.78005493425781	0.0122829806826988	0.78005493425781	474.30573492486	0	7.46856141012478						97	9	2	NaN	NaN	NaN	0.052972	1	7881	25.254	17.071	1	24420			20024	1786	16896	17383	20024	20024		
VDAVHADVYR	10	Unmodified	_VDAVHADVYR_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.790912	1143.56727	1.977	0.0011324	-0.21711	-0.00012436	1.7599	0.001008	572.790932799894	4.3701	0.14181	4.3701	4.2904	4.4322	0	582	31	0.934820374997243	0.0202594899473871	0.934820374997243	378.94366778321	0	8.21249261720749						148	17	3	NaN	NaN	NaN	0.023201	1	7883	53.517	45.334	1	29387			20025	1786	16896	17383	20025	20025		
VDAVHLLK	8	Unmodified	_VDAVHLLK_			0	0	0	Q9NTZ6	Q9NTZ6	Q9NTZ6	RBM12	RNA-binding protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.774003	893.533452	0.1208	5.4089E-05	0.87516	0.00039187	0.99595	0.00044596	447.774350181169	6.587	0.13302	6.587	6.5515	6.6845	0	711	31	0.847456455381371	0.0203778832072955	0.847456455381371	344.672165777073	0	8.28796464338694						223	16	3	NaN	NaN	NaN	0.018831	1	2238	49.325	24.474	1	66521			20026	3047	16897	17384	20026	20026		
VDCDQHSDIAQR	12	Unmodified	_VDCDQHSDIAQR_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.317696	1442.62084	2.9502	0.002131	-1.7283	-0.0012484	1.2219	0.00088259	722.316007411885	2.3838	0.11526	2.3838	2.3572	2.4724	0	498	19	0.991429299781895	0.0121070050888834	0.991429299781895	400.896807969839	0	4.89561857338259						97	14	2	NaN	NaN	NaN	0.0025869	1	16739	67.548	44.495	1	18481			20027	2719	16898	17385	20027	20027		
VDCDQHSDIAQR	12	Unmodified	_VDCDQHSDIAQR_			0	0	0	Q9BS26	Q9BS26	Q9BS26	ERP44	Endoplasmic reticulum resident protein 44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.88089	1442.62084	0.44376	0.00021384	1.1825	0.00056982	1.6262	0.00078366	481.881549819934	2.3749	0.079799	2.3749	2.3572	2.437	0	837	37	0.761618911097395	0.0245967820914116	0.761618911097395	461.952090529173	0	14.9189243358549						176	10	3	NaN	NaN	NaN	0.064878	1	16740	17.731	17.228	1	32101			20028	2719	16898	17385	20028	20028		
VDCTAHSDVCSAQGVR	16	Unmodified	_VDCTAHSDVCSAQGVR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.385784	1760.75702	3.5381	0.0031184	-2.5233	-0.002224	1.0148	0.00089445	881.383816291374	3.3503	0.079803	3.3503	3.3237	3.4035	0	363	37	1.08195024817156	0.0240673839691297	1.08195024817156	436.748452784398	0	9.71522741350554						197	10	3	NaN	NaN	NaN	0.00050405	1	26150	49.097	45.592	1	45547			20029	2294	16899	17386	20029	20029		
VDCTAHSDVCSAQGVR	16	Unmodified	_VDCTAHSDVCSAQGVR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.926282	1760.75702	1.384	0.00081371	0.66308	0.00038984	2.0471	0.0012035	588.261385181562	3.3503	0.10638	3.3503	3.3237	3.4301	0	672	49	0.873923798053065	0.03255936673099	0.873923798053065	529.159939936367	0	19.7146622876274						278	13	5	NaN	NaN	NaN	6.7256E-05	1	26151	89.382	85.646	1	72162			20030	2294	16899	17386	20030	20030		
VDCTAHSDVCSAQGVR	16	Unmodified	_VDCTAHSDVCSAQGVR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	587.926282	1760.75702	0.27196	0.00015989	2.0986	0.0012338	2.3705	0.0013937	587.927791948042	3.3503	0.079775	3.3503	3.3326	3.4124	0	759	34	0.814815566123307	0.0224640226482813	0.814815566123307	493.369962176674	0	13.6019419180331						213	10	4	NaN	NaN	NaN	7.8908E-09	1	26152	100.07	95.825	1	57901			20031	2294	16899	17386	20031	20031		
VDCTQHYELCSGNQVR	16	Unmodified	_VDCTQHYELCSGNQVR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.956241	1964.84689	0.89462	0.00058683	1.4262	0.00093553	2.3208	0.0015224	655.957508650663	5.1947	0.13303	5.1947	5.1593	5.2923	0	681	88	0.867820189810857	0.0589279560773067	0.867820189810857	525.038029283886	0	35.6518761510951						539	16	5	NaN	NaN	NaN	1.2266E-08	1	31009	107.6	106.72	1	141400			20032	2294	16900	17387	20032	20032		
VDCTQHYELCSGNQVR	16	Unmodified	_VDCTQHYELCSGNQVR_			0	0	0	Q8NBS9	Q8NBS9	Q8NBS9	TXNDC5	Thioredoxin domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.430723	1964.84689	2.6974	0.0026527	-0.18297	-0.00017994	2.5145	0.0024728	983.932987485101	5.1947	0.0798	5.1947	5.1681	5.2479	0	264	34	1.14797626962532	0.0219542113279454	1.14797626962532	463.024774297331	0	8.85501208863445						254	10	4	NaN	NaN	NaN	0.058855	1	31010	22.724	21.014	1	68174			20033	2294	16900	17387	20033	20033		
VDDFLANEAK	10	Unmodified	_VDDFLANEAK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.277303	1120.54005	1.4743	0.00082748	-0.18153	-0.00010189	1.2927	0.00072558	561.277324177768	7.8285	0.35484	7.8285	7.6688	8.0237	0	642	106	0.894250814548268	0.0710903877331608	0.894250814548268	362.586915694534	0	28.8246250429376						910	41	2	NaN	NaN	NaN	2.7758E-05	1	7275	127.94	81.498	1	769020			20034	1205	16901	17388	20034	20034		
VDDIHAICSLLK	12	Unmodified	_VDDIHAICSLLK_			0	0	0	Q9H0H5	Q9H0H5	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.368669	1382.72279	0.90213	0.00062461	1.1293	0.00078192	2.0315	0.0014065	692.369373714052	13.079	0.062064	13.079	13.043	13.105	0	408	34	1.0518390438467	0.0221028774104899	1.0518390438467	425.499179518307	0	8.94125033499694						123	8	3	NaN	NaN	NaN	0.0032447	1	14917	43.306	33.218	1	23747			20035	2846	16902	17389	20035	20035		
VDDLLESYMGIR	12	Unmodified	_VDDLLESYMGIR_			0	0	0	O14908;Q8TF64	O14908	O14908	GIPC1;GIPC3	PDZ domain-containing protein GIPC1;PDZ domain-containing protein GIPC3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.850309	1409.68607	0.60727	0.00042864	0.72724	0.00051332	1.3345	0.00094196	705.8507828329	15.934	0.17737	15.934	15.863	16.041	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	410.771037642165	0	8.96179847269889						375	21	4	NaN	NaN	NaN	0.00043973	1	15746	76.85	66.6	1	115870			20036	124	16903	17390	20036	20036		
VDDLLIIEEK	10	Unmodified	_VDDLLIIEEK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.831911	1185.64927	0.99279	0.00058955	-1.1604	-0.00068909	-0.16761	-9.9534E-05	593.831369543077	12.68	0.18625	12.68	12.609	12.795	0	552	37	0.955063035883597	0.0242777450705638	0.955063035883597	386.985589115114	0	9.83719097643285						392	22	3	NaN	NaN	NaN	8.7554E-05	1	9037	99.855	78.58	1	122200			20037	1737	16904	17391	20037	20037		
VDDNEETIK	9	Unmodified	_VDDNEETIK_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.751118	1061.48768	0.99892	0.00053118	3.0404	0.0016167	4.0393	0.0021479	531.754032245024	2.7828	0.24829	2.7828	2.6498	2.8981	0	732	40	0.833184998970724	0.0265004542713385	0.833184998970724	338.055165471247	0	10.7522524587307						246	29	2	NaN	NaN	NaN	0.065008	1	5756	25.254	16.491	1	57294			20038	485	16905	17392	20038	20038		
VDDYSQEWAAQTEK	14	Unmodified	_VDDYSQEWAAQTEK_			0	0	0	O95602	O95602	O95602	POLR1A	DNA-directed RNA polymerase I subunit RPA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.370649	1668.72674	2.3378	0.0019529	0.33424	0.00027921	2.6721	0.0022322	835.371422331529	8.0858	0.088804	8.0858	8.0591	8.1479	0	396	37	1.05987478976334	0.0240972677801761	1.05987478976334	428.021580734492	0	9.73148030906202						209	11	3	NaN	NaN	NaN	0.0057223	1	23589	59.67	57.191	1	42646			20039	444	16906	17393	20039	20039		
VDEAVAVLQAHHAK	14	Unmodified	_VDEAVAVLQAHHAK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	496.603685	1486.78923	-0.6124	-0.00030412	2.2032	0.0010941	1.5908	0.00078999	496.604831605715	5.2213	0.31923	5.2213	5.177	5.4962	0	768	43	0.808687310729125	0.0286044998957902	0.808687310729125	490.36270214269	0	17.3448744356992						733	37	5	NaN	NaN	NaN	7.1415E-06	1	18139	106.35	76.005	1	378820			20040	1653	16907	17394	20040	20040		
VDEAVAVLQAHHAK	14	Unmodified	_VDEAVAVLQAHHAK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.401889	1486.78923	2.4865	0.0018509	-0.86507	-0.00064396	1.6214	0.001207	744.401354291495	5.2213	0.16849	5.2213	5.1859	5.3544	0	327	43	1.10599442759226	0.0280322312253412	1.10599442759226	447.09643252821	0	11.3319834747634						422	20	4	NaN	NaN	NaN	1.256E-05	1	18140	103.87	91.854	1	147040			20041	1653	16907	17394	20041	20041		
VDEAVAVLQAHQAK	14	Unmodified	_VDEAVAVLQAHQAK_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.603574	1477.78889	0.80295	0.00039634	0.35894	0.00017717	1.1619	0.00057351	493.938140953004	6.8441	0.33703	6.8441	6.7555	7.0925	0	684	97	0.86578508874114	0.0652092989565188	0.86578508874114	525.014463294406	0	39.5430985572186						1037	39	5	NaN	NaN	NaN	0.0092982	1	17830	70.389	66.781	1	634160			20042	661	16908	17395	20042	20042		
VDEAVAVLQAHQAK	14	Unmodified	_VDEAVAVLQAHQAK_			0	0	0	P11940;Q9H361	P11940	P11940	PABPC1;PABPC3	Polyadenylate-binding protein 1;Polyadenylate-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.901722	1477.78889	2.9516	0.0021839	-0.99992	-0.00073984	1.9517	0.0014441	740.401925906102	6.8441	0.28369	6.8441	6.7644	7.0481	0	342	136	1.09598084995137	0.0902466717572521	1.09598084995137	443.073343401591	0	36.4841179370296						1459	33	5	NaN	NaN	NaN	4.7132E-24	1	17831	215.84	176.81	1	844100			20043	661	16908	17395	20043	20043		
VDEFPLCGHMVSDEYEQLSSEALEAAR	27	Unmodified	_VDEFPLCGHMVSDEYEQLSSEALEAAR_			0	0	0	P27635	P27635	P27635	RPL10	60S ribosomal protein L10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1028.13047	3081.36957	2.3658	0.0024323	-0.40554	-0.00041695	1.9602	0.0020154	1028.46468654459	17.805	0.16844	17.805	17.752	17.92	0	285	166	1.13399579921816	0.110195274751456	1.13399579921816	684.331255787217	0	66.4994268977657						2545	20	7	NaN	NaN	NaN	1.3141E-56	1	38326	315.35	309.3	1	1007100			20044	864	16909	17396	20044	20044		
VDEFPLCGHMVSDEYEQLSSEALEAAR	27	Oxidation (M)	_VDEFPLCGHM(Oxidation (M))VSDEYEQLSSEALEAAR_	VDEFPLCGHM(1)VSDEYEQLSSEALEAAR	VDEFPLCGHM(57)VSDEYEQLSSEALEAAR	0	1	0	P27635	P27635	P27635	RPL10	60S ribosomal protein L10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1033.4621	3097.36448	1.7013	0.0017582	0.04256	4.3984E-05	1.7439	0.0018022	1033.79671290917	16.484	0.11532	16.484	16.44	16.555	0	303	79	1.12200181823275	0.0520240572987787	1.12200181823275	677.077539046507	0	31.3941743361459						919	14	6	NaN	NaN	NaN	5.1084E-10	1	38353	57.053	56.729	1	221510			20045	864	16909	17397	20045	20045	294	
VDEFVTHNLSFDEINK	16	Unmodified	_VDEFVTHNLSFDEINK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.310896	1905.91086	-0.21143	-0.00013453	-0.47638	-0.00030313	-0.68781	-0.00043766	636.644945581985	12.139	0.19511	12.139	12.094	12.29	0	702	82	0.853568545818287	0.054985943039609	0.853568545818287	516.527557432221	0	33.2741347962029						880	23	6	NaN	NaN	NaN	4.3839E-09	1	29714	151.52	138.94	1	566240			20046	658	16910	17398	20046	20046		
VDEFVTHNLSFDEINK	16	Unmodified	_VDEFVTHNLSFDEINK_			0	0	0	P11766	P11766	P11766	ADH5	Alcohol dehydrogenase class-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	953.962705	1905.91086	1.9114	0.0018234	0.769	0.0007336	2.6804	0.002557	954.465118096647	12.139	0.15076	12.139	12.077	12.227	0	207	85	1.18585551256002	0.0558028968847089	1.18585551256002	478.406713644272	0	22.5124226583148						895	18	5	NaN	NaN	NaN	2.6141E-17	1	29715	160.07	149.1	1	340890			20047	658	16910	17398	20047	20047		
VDEGAGDSAAVASGGAQTLALAGSPAPSGHPK	32	Unmodified	_VDEGAGDSAAVASGGAQTLALAGSPAPSGHPK_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	949.468686	2845.38423	2.2893	0.0021736	-2.1188	-0.0020117	0.17048	0.00016186	949.465631282785	9.6558	0.070941	9.6558	9.6292	9.7002	0	264	22	1.14797626962532	0.0139766252810534	1.14797626962532	693.026285210745	0	8.4376035939074						113	9	4	NaN	NaN	NaN	0.059994	1	37993	4.7601	3.9194	1	17489			20048	3137	16911	17399	20048	20048		
VDEGAGDSAAVASGGAQTLALAGSPAPSGHPK	32	Unmodified	_VDEGAGDSAAVASGGAQTLALAGSPAPSGHPK_			0	0	0	Q9NZT2	Q9NZT2	Q9NZT2	OGFR	Opioid growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	949.468686	2845.38423	1.7567	0.001668	-0.22133	-0.00021015	1.5354	0.0014578	949.802947354739	9.6647	0.044322	9.6647	9.647	9.6913	0	159	16	1.21767724410157	0.00993542225501542	1.21767724410157	735.104332377514	0	5.99795387409949						55	6	3	NaN	NaN	NaN	0.031018	1	37994	29.441	29.441	1	6435.8			20049	3137	16911	17399	20049	20049		
VDEIFGQLR	9	Unmodified	_VDEIFGQLR_			0	0	0	Q9NY12	Q9NY12	Q9NY12	GAR1	H/ACA ribonucleoprotein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.790381	1075.56621	0.52979	0.00028545	-3.7824	-0.0020379	-3.2526	-0.0017525	538.790303941404	11.181	0.22167	11.181	11.11	11.332	0	657	43	0.884090832094921	0.0284578263810398	0.884090832094921	358.649504932588	0	11.5444985656424						574	26	4	NaN	NaN	NaN	0.0011778	1	6103	93.561	84.168	1	168980			20050	3107	16912	17400	20050	20050		
VDELMQDIADQQELAEEISTAISK	24	Unmodified	_VDELMQDIADQQELAEEISTAISK_			0	0	0	Q9H444	Q9H444	Q9H444	CHMP4B	Charged multivesicular body protein 4b	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	892.768862	2675.28476	0.49532	0.0004422	-1.9098	-0.001705	-1.4145	-0.0012628	893.101385386288	20.04	0.035463	20.04	20.022	20.057	0	492	40	0.995464410099171	0.0262191597817407	0.995464410099171	601.141627776983	0	15.8332414802958						113	5	5	NaN	NaN	NaN	5.6677E-18	1	37529	119.56	114.47	1	27430			20051	2889	16913	17401	20051	20051		
VDELSLYSVPEGQSK	15	Unmodified	_VDELSLYSVPEGQSK_			0	0	0	Q9BUR5	Q9BUR5	Q9BUR5	APOO	Apolipoprotein O	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.914692	1649.81483	2.5111	0.002074	-4.0756	-0.0033661	-1.5645	-0.0012921	826.41334089783	11.128	0.20392	11.128	11.048	11.252	0	384	70	1.06790610341098	0.0461450733802129	1.06790610341098	431.305685324694	0	18.6370622239542						763	24	4	NaN	NaN	NaN	0.00016126	1	23030	80.623	76.377	1	306680			20052	2751	16914	17402	20052	20052		
VDENFDCVEADDVEGK	16	Unmodified	_VDENFDCVEADDVEGK_			0	0	0	O14929	O14929	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.88072	1839.74689	3.0401	0.0027995	-2.0966	-0.0019308	0.94342	0.00086878	920.87888014423	8.9287	0.16862	8.9287	8.8487	9.0174	0	336	61	1.09998710857178	0.0400681242078851	1.09998710857178	443.880374821403	0	16.168784027732						770	20	5	NaN	NaN	NaN	6.5842E-44	1	28210	243.29	234.92	1	372890			20053	126	16915	17403	20053	20053		
VDEVGGEALGR	11	Unmodified	_VDEVGGEALGR_			0	0	0	CON__Q3SX09;CON__P02070	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.280377	1100.5462	0.81455	0.00044904	2.4353	0.0013425	3.2498	0.0017916	551.281727979677	5.3898	0.28371	5.3898	5.3189	5.6026	0	660	67	0.882057989648486	0.0447008465529238	0.882057989648486	357.722091117566	0	18.1286043449476						680	33	2	NaN	NaN	NaN	2.9061E-05	1	6731	123.5	98.653	1	796820		+	20054	40	16916	17404	20054	20054		
VDEVPDGAVKPPTNK	15	Unmodified	_VDEVPDGAVKPPTNK_			0	0	1	O75475	O75475	O75475	PSIP1	PC4 and SFRS1-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.610505	1564.80969	0.99202	0.00051844	4.8254	0.0025218	5.8174	0.0030402	522.612072715329	5.3455	0.22169	5.3455	5.177	5.3987	0	621	46	0.908462957275599	0.0304461528019007	0.908462957275599	550.610495480862	0	18.4531148413737						407	26	3	NaN	NaN	NaN	0.016986	1	20501	43.613	40.942	1	89725			20055	336	16917	17405	20055	20055		
VDFEQLTENLGQLER	15	Unmodified	_VDFEQLTENLGQLER_			0	0	0	Q9Y613	Q9Y613	Q9Y613	FHOD1	FH1/FH2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.949598	1789.88464	1.2948	0.0011601	-1.1707	-0.0010489	0.12412	0.0001112	895.949937691402	17.433	0.16848	17.433	17.371	17.539	0	318	46	1.11199926528787	0.0300117972178613	1.11199926528787	448.82119371042	0	12.1132549932292						359	20	3	NaN	NaN	NaN	1.8167E-08	1	26968	144.2	133.71	1	75179			20056	3449	16918	17406	20056	20056		
VDFNVPMK	8	Unmodified	_VDFNVPMK_			0	0	0	P00558;P07205	P00558	P00558	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.244221	948.473888	-1.246	-0.00059216	-2.6592	-0.0012638	-3.9052	-0.0018559	475.244031342689	9.4076	0.28377	9.4076	9.2923	9.576	0	765	73	0.810730346695089	0.0490363080759948	0.810730346695089	329.445988619533	0	19.9262492864644						1226	33	5	NaN	NaN	NaN	0.026266	1	3215	47.349	32.814	1	579500			20057	484	16919	17407	20057	20057		
VDFPTAIGMVVER	13	Unmodified	_VDFPTAIGMVVER_			0	0	0	O96019	O96019	O96019	ACTL6A	Actin-like protein 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.376494	1432.73844	1.2226	0.00087704	-1.7065	-0.0012242	-0.48389	-0.00034713	717.375346436027	16.12	0.26601	16.12	15.961	16.227	0	492	67	0.995464410099171	0.0443555739559077	0.995464410099171	402.554824791895	0	17.9369047463842						893	31	4	NaN	NaN	NaN	0.00031794	1	16478	72.846	55.115	1	273950			20058	470	16920	17408	20058	20058		
VDFTEEEINNMK	12	Unmodified	_VDFTEEEINNMK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.834856	1467.65516	2.0363	0.0014963	0.69816	0.00051303	2.7345	0.0020094	734.835504081281	10.126	0.2128	10.126	10.064	10.277	0	441	52	1.02971785871157	0.0342203468041924	1.02971785871157	416.311790199828	0	13.8351818595611						818	25	5	NaN	NaN	NaN	1.1634E-07	1	17500	155.57	146.81	1	492550			20059	1095	16921	17409	20059	20059		
VDGEIILHLYDK	12	Unmodified	_VDGEIILHLYDK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.882467	1413.75038	2.1609	0.0015297	-0.33781	-0.00023913	1.8231	0.0012905	707.882296993921	12.724	0.23058	12.724	12.671	12.901	0	411	28	1.04982941439551	0.0180866667822672	1.04982941439551	424.59394524351	0	7.31498765426522						437	27	4	NaN	NaN	NaN	3.8008E-05	1	15889	86.243	76.981	1	114200			20060	581	16922	17410	20060	20060		
VDGIAWSPETR	11	Unmodified	_VDGIAWSPETR_			0	0	0	Q8NFH4	Q8NFH4	Q8NFH4	NUP37	Nucleoporin Nup37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.809302	1229.60405	0.66357	0.00040863	-1.4843	-0.00091407	-0.82077	-0.00050544	615.808637799469	9.5583	0.14188	9.5583	9.5051	9.647	0	606	34	0.918606045818476	0.0223055201987317	0.918606045818476	372.06036150073	0	9.03434061465111						219	17	3	NaN	NaN	NaN	0.0071088	1	10292	39.039	29.525	1	51624			20061	2318	16923	17411	20061	20061		
VDGMDILCVR	10	Unmodified	_VDGMDILCVR_			0	0	0	P08559	P08559	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.288834	1176.56311	1.2017	0.00070814	-1.021	-0.00060168	0.18065	0.00010646	589.288447810086	12.981	0.19509	12.981	12.875	13.07	0	585	43	0.932794566565362	0.0283672188304905	0.932794566565362	377.996114940268	0	11.4952411752009						431	23	4	NaN	NaN	NaN	0.00043462	1	8780	76.605	57.117	1	178100			20062	583	16924	17412	20062	20062		
VDGVAQDGTTMYIHNK	16	Unmodified	_VDGVAQDGTTMYIHNK_			0	0	0	Q9P2C4	Q9P2C4	Q9P2C4	TMEM181	Transmembrane protein 181	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.917243	1747.81993	2.188	0.0019143	-1.0624	-0.00092955	1.1255	0.00098476	874.916956727422	6.2146	0.044357	6.2146	6.1879	6.2323	0	219	16	1.17788915118882	0.00996000376094397	1.17788915118882	475.503385821142	0	4.02076503238033						39	6	2	NaN	NaN	NaN	1.0966E-17	1	25828	151.52	127.72	1	7769.4			20063	3156	16925	17413	20063	20063		
VDHLTLACTPGSSPTLLR	18	Unmodified	_VDHLTLACTPGSSPTLLR_			0	0	0	Q96IR7	Q96IR7	Q96IR7	HPDL	4-hydroxyphenylpyruvate dioxygenase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.675292	1937.00405	1.0157	0.0006568	-1.8031	-0.001166	-0.78744	-0.00050922	647.007577507274	11.083	0.088687	11.083	11.039	11.128	0	618	55	0.910492137470517	0.0365075402693392	0.910492137470517	550.910383483415	0	22.0895735197596						250	11	4	NaN	NaN	NaN	0.00068303	1	30460	73.891	70.997	1	71918			20064	2559	16926	17414	20064	20064		
VDHVIEVCFQK	11	Unmodified	_VDHVIEVCFQK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.567583	1372.68092	-1.3891	-0.00063699	-0.71794	-0.00032923	-2.107	-0.00096622	458.567430751959	8.2011	0.08875	8.2011	8.1745	8.2632	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	468.392321993272	0	9.94382442705421						157	11	3	NaN	NaN	NaN	0.051961	1	14565	13.995	12.195	1	40516			20065	1696	16927	17415	20065	20065		
VDHVIEVCFQK	11	Unmodified	_VDHVIEVCFQK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.347737	1372.68092	1.4328	0.00098483	0.79021	0.00054315	2.223	0.001528	687.348634592603	8.21	0.19507	8.21	8.077	8.2721	0	498	37	0.991429299781895	0.0242140133018964	0.991429299781895	401.090745102732	0	9.79597500227362						361	23	4	NaN	NaN	NaN	1.6926E-07	1	14567	118.91	114	1	74901			20066	1696	16927	17415	20066	20066		
VDHVQMIVLDEADK	14	Unmodified	_VDHVQMIVLDEADK_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.939746	1610.79741	-1.6465	-0.00088574	-0.28953	-0.00015575	-1.9361	-0.0010415	537.939231109826	10.179	0.079814	10.179	10.152	10.232	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	482.583527388478	0	9.91259731002992						163	10	4	NaN	NaN	NaN	0.0032965	1	21918	54.199	50.216	1	37808			20067	847	16928	17416	20067	20067		
VDHVQMIVLDEADK	14	Unmodified	_VDHVQMIVLDEADK_			0	0	0	P26196	P26196	P26196	DDX6	Probable ATP-dependent RNA helicase DDX6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.40598	1610.79741	2.0469	0.0016506	-2.0267	-0.0016344	0.02017	1.6265E-05	806.404466706466	10.179	0.14189	10.179	10.117	10.259	0	378	40	1.07192009927972	0.0260855828537037	1.07192009927972	433.014169691712	0	10.5375643277058						319	17	4	NaN	NaN	NaN	0.00032453	1	21920	62.454	54.897	1	60693			20068	847	16928	17416	20068	20068		
VDIDAPDVDVHGPDWHLK	18	Unmodified	_VDIDAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	507.75099	2026.97485	-1.015	-0.00051537	0.59587	0.00030255	-0.41913	-0.00021281	508.002181181045	11.828	0.21284	11.828	11.766	11.979	0	741	61	0.827064408645228	0.0408238157950056	0.827064408645228	667.028390693244	0	32.9244540897429						868	25	6	NaN	NaN	NaN	0.0035881	1	32097	33.526	33.007	1	902730			20069	1584	16929	17417	20069	20069		
VDIDAPDVDVHGPDWHLK	18	Unmodified	_VDIDAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.665561	2026.97485	0.8564	0.00057949	0.5307	0.00035911	1.3871	0.0009386	677.000409683599	11.828	0.15079	11.828	11.793	11.944	0	582	88	0.934820374997243	0.0587892162904202	0.934820374997243	565.452184404631	0	35.5602976357383						1156	18	6	NaN	NaN	NaN	2.0559E-05	1	32098	151.08	133.66	1	782110			20070	1584	16929	17417	20070	20070		
VDIDAPDVDVHGPDWHLK	18	Unmodified	_VDIDAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.4947	2026.97485	1.6393	0.0016631	-0.07858	-7.9719E-05	1.5607	0.0015833	1014.99602675084	11.828	0.097546	11.828	11.802	11.899	0	195	112	1.19381749893585	0.0736333241864111	1.19381749893585	481.410842285476	0	29.6928807363416						846	12	5	NaN	NaN	NaN	4.391E-07	1	32100	84.58	74.559	1	218600			20071	1584	16929	17417	20071	20071		
VDIDAPDVSIEGPDAK	16	Unmodified	_VDIDAPDVSIEGPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.904325	1639.7941	2.0891	0.0017149	-3.0028	-0.002465	-0.91375	-0.0007501	820.902689241697	11.261	0.25718	11.261	11.128	11.385	0	375	64	1.07392668217569	0.0421440729846028	1.07392668217569	433.75934448288	0	17.0220051098884						1146	30	7	NaN	NaN	NaN	0.0014635	1	22749	87.573	80.015	1	371250			20072	1584	16930	17418	20072	20072		
VDIDTPDIDIHGPEGK	16	Unmodified	_VDIDTPDIDIHGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	574.284458	1719.83154	0.31928	0.00018336	1.3107	0.0007527	1.6299	0.00093605	574.284884674145	10.596	0.19507	10.596	10.498	10.693	0	669	40	0.875957769340875	0.026448974146953	0.875957769340875	530.489984995686	0	16.0177994755685						495	23	4	NaN	NaN	NaN	3.9391E-05	1	25053	79.795	66.621	1	197580			20073	1584	16931	17419	20073	20073		
VDIDTPDINIEGSEGK	16	Unmodified	_VDIDTPDINIEGSEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.412514	1700.81047	1.6526	0.001407	0.4916	0.00041855	2.1442	0.0018256	851.412419410854	11.527	0.15089	11.527	11.465	11.616	0	366	46	1.07994477139643	0.0300904538229143	1.07994477139643	436.058915736553	0	12.1498904532631						461	18	4	NaN	NaN	NaN	2.1303E-06	1	24515	123.92	112.95	1	111630			20074	1584	16932	17420	20074	20074		
VDIDVPDVDVQGPDWHLK	18	Unmodified	_VDIDVPDVDVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.009217	2046.00582	0.021286	1.4538E-05	-0.75144	-0.00051324	-0.73015	-0.0004987	683.343883326913	14.781	0.14189	14.781	14.728	14.87	0	564	142	0.946969335010767	0.0953188536447374	0.946969335010767	572.764617603656	0	57.6526237331919						1490	17	7	NaN	NaN	NaN	0.001357	1	32461	65.12	48.989	1	480520			20075	1584	16933	17421	20075	20075		
VDIDVPDVNIEGPDAK	16	Unmodified	_VDIDVPDVNIEGPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.425424	1694.8363	1.9532	0.0016571	-1.9079	-0.0016187	0.045251	3.8392E-05	848.423631455304	13.318	0.15076	13.318	13.23	13.38	0	360	100	1.08395544855938	0.0661990663395557	1.08395544855938	437.690820980043	0	26.7305485043514						997	18	5	NaN	NaN	NaN	2.8464E-06	1	24343	90.156	13.593	1	529770			20076	1584	16934	17422	20076	20076		
VDIDVPDVNVQGPDWHLK	18	Unmodified	_VDIDVPDVNVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	682.681211	2045.0218	0.32168	0.0002196	-2.2321	-0.0015238	-1.9105	-0.0013042	683.014046747672	14.515	0.079827	14.515	14.48	14.56	1.7764E-15	660	139	0.882057989648486	0.0935564242965871	0.882057989648486	533.505394979688	0	56.5868204619167						904	10	4	NaN	NaN	NaN	2.3072E-05	1	32442	78.888	65.543	1	238710			20077	1584	16935	17423	20077	20077		
VDIEAPDVSLEGPEGK	16	Unmodified	_VDIEAPDVSLEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.91215	1653.80975	1.3606	0.0011264	-0.94503	-0.0007824	0.41553	0.00034402	827.911733532449	11.944	0.21282	11.944	11.864	12.077	0	399	76	1.0578662689527	0.0501784446971434	1.0578662689527	427.242192966081	0	20.2656511330673						776	25	3	NaN	NaN	NaN	0.00019413	1	23156	81.48	59.476	1	232580			20078	1584	16936	17424	20078	20078		
VDIEGPDVNIEGPEGK	16	Unmodified	_VDIEGPDVNIEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.409774	1666.805	2.7235	0.0022725	-1.8307	-0.0015276	0.89274	0.00074491	834.408631246073	10.729	0.15076	10.729	10.649	10.8	-1.7764E-15	393	100	1.0618830335572	0.0662629912397972	1.0618830335572	428.836672602048	0	26.7600100782688						906	18	4	NaN	NaN	NaN	4.975E-12	1	23535	155.57	139.28	1	406390			20079	1584	16937	17425	20079	20079		
VDIETPNLEGTLTGPR	16	Unmodified	_VDIETPNLEGTLTGPR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.446691	1710.87883	2.4094	0.0020635	0.68072	0.000583	3.0901	0.0026465	856.949879371917	13.247	0.20396	13.247	13.176	13.38	0	327	88	1.10599442759226	0.0580548153667424	1.10599442759226	446.555973758366	0	23.4401945983541						876	24	5	NaN	NaN	NaN	1.3382E-08	1	24790	102.57	84.836	1	340960			20080	1584	16938	17426	20080	20080		
VDIGDTIIYLVH	12	Unmodified	_VDIGDTIIYLVH_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.371735	1356.72892	0.53879	0.00036604	-1.6975	-0.0011532	-1.1587	-0.00078719	679.370458854026	18.727	0.13301	18.727	18.692	18.825	0	507	46	0.985374541851584	0.0302821710490335	0.985374541851584	398.687984532209	0	12.252333737091						517	16	5	NaN	NaN	NaN	3.9062E-08	1	14105	137.84	125.25	1	290830			20081	3161	16939	17427	20081	20081		
VDIIPGFEFDR	11	Unmodified	_VDIIPGFEFDR_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.335153	1306.65575	0.20231	0.00013238	-1.5264	-0.00099877	-1.3241	-0.0008664	654.334458643734	16.28	0.19505	16.28	16.218	16.413	0	549	52	0.957085760909907	0.0343910976262953	0.957085760909907	387.391813690256	0	13.9202046758936						594	23	4	NaN	NaN	NaN	0.00042407	1	12559	56.202	49.512	1	245850			20082	2892	16940	17428	20082	20082		
VDILDPALLR	10	Unmodified	_VDILDPALLR_			0	0	0	P17980	P17980	P17980	PSMC3	26S protease regulatory subunit 6A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.837331	1123.66011	0.26946	0.00015166	-0.67716	-0.00038113	-0.4077	-0.00022947	562.837206079143	15.331	0.23947	15.331	15.26	15.5	0	621	52	0.908462957275599	0.034500858375006	0.908462957275599	368.337007441278	0	13.9883996658655						586	28	6	NaN	NaN	NaN	0.00099128	1	7374	83.623	61.237	1	330350			20083	746	16941	17429	20083	20083		
VDINAPDVDVHGPDWHLK	18	Unmodified	_VDINAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.337556	2025.99084	0.70518	0.00047694	0.81311	0.00054994	1.5183	0.0010269	676.672595368108	11.509	0.079803	11.509	11.483	11.562	0	591	67	0.928742107665821	0.0445956067149914	0.928742107665821	561.777427997561	0	26.9749858798834						414	10	4	NaN	NaN	NaN	3.438E-05	1	32078	80.379	67.161	1	106140			20084	1584	16942	17430	20084	20084		
VDINAPDVDVQGPDWHLK	18	Unmodified	_VDINAPDVDVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	673.337445	2016.9905	0.79856	0.0005377	-3.0823	-0.0020754	-2.2837	-0.0015377	673.669532760925	12.981	0.15961	12.981	12.901	13.061	0	636	115	0.898312834727904	0.0772106423018905	0.898312834727904	543.387872130814	0	46.7045833080921						1415	19	5	NaN	NaN	NaN	9.8517E-11	1	31930	144.16	133.19	1	565050			20085	1584	16943	17431	20085	20085		
VDINAPDVEVHGPDWHLK	18	Unmodified	_VDINAPDVEVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	511.008899	2040.00649	-0.98366	-0.00050266	-0.22445	-0.0001147	-1.2081	-0.00061736	511.259545924703	11.509	0.14194	11.509	11.465	11.607	0	744	31	0.82502364452135	0.0204090624710167	0.82502364452135	665.353657746923	0	16.4592184193152						356	17	5	NaN	NaN	NaN	0.050979	1	32342	13.345	13.223	1	171090			20086	1584	16944	17432	20086	20086		
VDINAPDVEVHGPDWHLK	18	Unmodified	_VDINAPDVEVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	681.009439	2040.00649	1.0557	0.00071895	-0.96083	-0.00065434	0.094883	6.4616E-05	681.342777295197	11.509	0.12423	11.509	11.465	11.589	0	537	55	0.965173861991602	0.0363712953515518	0.965173861991602	583.786998559723	0	21.9992378401109						410	15	5	NaN	NaN	NaN	0.00068369	1	32343	51.07	44.548	1	141630			20087	1584	16944	17432	20087	20087		
VDINAPDVGVQGPDWHLK	18	Unmodified	_VDINAPDVGVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.002285	1958.98503	0.0039096	2.5569E-06	0.30259	0.00019789	0.3065	0.00020045	654.336662840712	12.635	0.15074	12.635	12.556	12.706	0	663	160	0.880024865079826	0.107726064306031	0.880024865079826	532.433121031103	0	65.1764818368565						1266	18	4	NaN	NaN	NaN	0.00046785	1	30887	87.251	83.747	1	404230			20088	1584	16945	17433	20088	20088		
VDINAPDVGVQGPDWHLK	18	Unmodified	_VDINAPDVGVQGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.499789	1958.98503	1.6442	0.0016122	-0.12492	-0.00012248	1.5193	0.0014897	980.500155571453	12.635	0.079806	12.635	12.591	12.671	0	180	88	1.203763835057	0.0577125695404581	1.203763835057	485.536322286728	0	23.2782776391219						554	10	4	NaN	NaN	NaN	0.00012802	1	30888	76.009	69.154	1	145140			20089	1584	16945	17433	20089	20089		
VDINTEDLEDGTCR	14	Unmodified	_VDINTEDLEDGTCR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.859591	1635.70463	1.7239	0.0014116	0.62642	0.00051295	2.3503	0.0019245	818.859175261376	8.6891	0.12442	8.6891	8.6446	8.769	0	378	25	1.07192009927972	0.016055984619652	1.07192009927972	432.957940078308	0	6.48515316722268						238	15	4	NaN	NaN	NaN	1.5365E-05	1	22647	79.795	75.812	1	55331			20090	792	16946	17434	20090	20090		
VDINTPDVDVHGPDWHLK	18	Unmodified	_VDINTPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	515.007627	2056.0014	-0.7427	-0.00038249	-0.040832	-2.1029E-05	-0.78353	-0.00040352	515.258383138731	11.429	0.13304	11.429	11.394	11.527	0	747	40	0.822982596624503	0.0265410084545386	0.822982596624503	663.672784523152	0	21.4033019134583						347	16	5	NaN	NaN	NaN	0.022955	1	32638	12.376	12.253	1	156620			20091	1584	16947	17435	20091	20091		
VDINTPDVDVHGPDWHLK	18	Unmodified	_VDINTPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.341078	2056.0014	0.7069	0.00048518	0.59323	0.00040716	1.3001	0.00089234	686.67569156321	11.429	0.13306	11.429	11.341	11.474	0	597	52	0.924688525662974	0.0344721745325131	0.924688525662974	559.269985559413	0	20.8494558091088						419	16	5	NaN	NaN	NaN	7.8948E-07	1	32640	90.376	82.008	1	94831			20092	1584	16947	17435	20092	20092		
VDIQTEDLEDGTCK	14	Unmodified	_VDIQTEDLEDGTCK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.864342	1621.71413	3.8341	0.0031127	-0.88036	-0.00071473	2.9537	0.002398	811.863726882762	7.7044	0.31933	7.7044	7.5801	7.8995	0	393	91	1.0618830335572	0.0603097490622018	1.0618830335572	428.934960373786	0	24.3614023453131						972	37	6	NaN	NaN	NaN	9.4827E-13	1	22232	188.88	146.82	1	458940			20093	326	16948	17436	20093	20093		
VDISAPDVDVHGPDWHLK	18	Unmodified	_VDISAPDVDVHGPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.333923	1998.97994	0.53448	0.00035668	0.47219	0.00031511	1.0067	0.00067179	667.668675884854	11.828	0.12417	11.828	11.775	11.899	0	555	52	0.953040030838688	0.0343910976262953	0.953040030838688	576.527712438644	0	20.8043945701775						475	15	5	NaN	NaN	NaN	7.0802E-07	1	31619	95.345	90.003	1	172570			20094	1584	16949	17437	20094	20094		
VDLGGFAGLFDLK	13	Unmodified	_VDLGGFAGLFDLK_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.366453	1350.71835	1.1111	0.0007515	-0.45146	-0.00030535	0.65962	0.00044615	676.366136416594	19.729	0.11529	19.729	19.694	19.809	0	477	70	1.0055473068722	0.0463877641696587	1.0055473068722	406.868250040219	0	18.7695877677749						522	14	4	NaN	NaN	NaN	0.0002097	1	13910	112.7	98.248	1	320080			20095	801	16950	17438	20095	20095		
VDLNSNGFICDYELHELFK	19	Unmodified	_VDLNSNGFICDYELHELFK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.700054	2312.07833	-0.071975	-5.5543E-05	0.36848	0.00028435	0.2965	0.00022881	772.034637216402	17.087	0.062073	17.087	17.06	17.122	0	537	40	0.965173861991602	0.0262845144362098	0.965173861991602	583.322811900313	0	15.8855906424222						249	8	4	NaN	NaN	NaN	2.9855E-07	1	35733	66.66	56.748	1	47877			20096	683	16951	17439	20096	20096		
VDLPATSVVITFHNEAR	17	Unmodified	_VDLPATSVVITFHNEAR_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.667014	1867.97921	0.90243	0.00056282	0.48957	0.00030533	1.392	0.00086815	624.001700164534	13.23	0.2306	13.23	13.132	13.363	0	540	40	0.963152256458504	0.0262917911447993	0.963152256458504	582.926363415703	0	15.9125186043556						372	27	2	NaN	NaN	NaN	0.034358	1	28887	7.6476	7.4959	1	130640			20097	1586	16952	17440	20097	20097		
VDLPATSVVITFHNEAR	17	Unmodified	_VDLPATSVVITFHNEAR_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.996882	1867.97921	0.62918	0.00058828	1.2937	0.0012096	1.9229	0.0017979	935.499358823129	13.247	0.20397	13.247	13.15	13.354	0	81	52	1.2692388538616	0.0336694903700661	1.2692388538616	512.120985736146	0	13.5851912704148						550	24	3	NaN	NaN	NaN	1.2402E-07	1	28888	92.747	63.43	1	122660			20098	1586	16952	17440	20098	20098		
VDLPLAVLSK	10	Unmodified	_VDLPLAVLSK_			0	0	0	Q9H773	Q9H773	Q9H773	DCTPP1	dCTP pyrophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.828975	1053.6434	-1.0214	-0.00053914	0.12683	6.6944E-05	-0.8946	-0.00047219	527.82899259464	14.861	0.11527	14.861	14.817	14.932	0	669	40	0.875957769340875	0.0264379622091019	0.875957769340875	355.443622952603	0	10.7279202262892						297	14	3	NaN	NaN	NaN	0.0015599	1	5568	59.645	55.443	1	125620			20099	2912	16953	17441	20099	20099		
VDLPLIDSLIR	11	Unmodified	_VDLPLIDSLIR_			0	0	0	Q96ER3	Q96ER3	Q96ER3	SAAL1	Protein SAAL1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.37682	1252.73909	0.24373	0.00015291	-0.13405	-8.4099E-05	0.10968	6.8814E-05	627.376818626558	19.49	0.13305	19.49	19.392	19.525	0	558	40	0.951016745717027	0.0263063536302146	0.951016745717027	385.108587513814	0	10.6526017914991						175	16	2	NaN	NaN	NaN	0.00042407	1	11006	56.202	50.336	1	35823			20100	2518	16954	17442	20100	20100		
VDLQSLPTR	9	Unmodified	_VDLQSLPTR_			0	0	0	Q9C005	Q9C005	Q9C005	DPY30	Protein dpy-30 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.790381	1027.56621	0.57782	0.00029745	0.19964	0.00010277	0.77745	0.00040023	514.79049599209	7.935	0.1862	7.935	7.8818	8.068	0	690	55	0.86171403876517	0.036644552172756	0.86171403876517	349.778293236504	0	14.8743879509842						386	22	2	NaN	NaN	NaN	0.00029044	1	4933	88.181	51.97	1	216910			20101	2817	16955	17443	20101	20101		
VDLSTSTDWK	10	Unmodified	_VDLSTSTDWK_			0	0	0	Q9BQ69	Q9BQ69	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.282586	1150.55062	0.90754	0.000523	1.6699	0.00096236	2.5775	0.0014854	576.284052850701	8.4406	0.18628	8.4406	8.343	8.5293	0	597	55	0.924688525662974	0.0365024805192742	0.924688525662974	374.809453553585	0	14.7957657060472						458	22	3	NaN	NaN	NaN	0.012085	1	8074	54.436	45.673	1	111060			20102	2693	16956	17444	20102	20102		
VDLTEEGALAGQEK	14	Unmodified	_VDLTEEGALAGQEK_			0	0	0	Q9NX57	Q9NX57	Q9NX57	RAB20	Ras-related protein Rab-20	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.367378	1458.7202	1.3848	0.0010114	-0.95147	-0.00069493	0.43333	0.00031649	730.366485073626	8.3697	0.11532	8.3697	8.2898	8.4051	0	456	25	1.01965166402748	0.0161159257109076	1.01965166402748	412.265646563376	0	6.51599243895868						170	14	3	NaN	NaN	NaN	0.0055115	1	17233	40.861	36.032	1	46077			20103	3098	16957	17445	20103	20103		
VDLTLDWLTETSEEAK	16	Unmodified	_VDLTLDWLTETSEEAK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.456921	1848.89929	0.92135	0.00085267	1.6798	0.0015546	2.6011	0.0024072	925.458499729893	18.053	0.12414	18.053	18.009	18.133	0	219	37	1.17788915118882	0.0239089385637625	1.17788915118882	475.298748126431	0	9.6476723271615						320	15	4	NaN	NaN	NaN	6.7832E-09	1	28465	119.43	114.04	1	69077			20104	1126	16958	17446	20104	20104		
VDLVLLGK	8	Unmodified	_VDLVLLGK_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.778754	855.542954	-2.298	-0.00098535	-0.55278	-0.00023702	-2.8508	-0.0012224	428.778442632233	12.298	0.1153	12.298	12.245	12.361	0	786	31	0.796423123669906	0.0204488487727063	0.796423123669906	324.133771620822	0	8.32241340188443						218	14	3	NaN	NaN	NaN	0.057035	1	1648	36.57	18.875	1	74623			20105	1003	16959	17447	20105	20105		
VDMTFEEEAQLLQLK	15	Unmodified	_VDMTFEEEAQLLQLK_			0	0	0	Q14318	Q14318	Q14318	FKBP8	Peptidyl-prolyl cis-trans isomerase FKBP8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.453127	1792.8917	0.58398	0.00052409	2.4084	0.0021614	2.9924	0.0026855	897.956284871635	17.069	0.1064	17.069	17.034	17.14	0	237	34	1.16593139812432	0.0219361104530864	1.16593139812432	470.58300886974	0	8.85366058116199						250	13	4	NaN	NaN	NaN	9.5088E-12	1	27048	114.93	110.95	1	53405			20106	1746	16961	17448	20106	20106		
VDNDENEHQLSLR	13	Unmodified	_VDNDENEHQLSLR_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.868608	1567.72266	3.2964	0.0025872	-0.46073	-0.00036161	2.8356	0.0022256	784.868558636827	4.6184	0.60293	4.6184	4.5386	5.1415	0	426	187	1.03977710643793	0.1250544147661	1.03977710643793	420.128019031642	0	50.5289674311358						2634	69	6	NaN	NaN	NaN	1.1192E-43	1	20579	299.09	266.95	1	3378300			20107	547	16962	17449	20107	20107		
VDNDENEHQLSLR	13	Unmodified	_VDNDENEHQLSLR_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.581497	1567.72266	1.5572	0.00081531	1.9016	0.00099566	3.4588	0.001811	523.582292294881	4.6184	0.46107	4.6184	4.5386	4.9997	0	708	133	0.849494101904619	0.0896878048480405	0.849494101904619	514.861682713052	0	54.3580161644098						2844	53	6	NaN	NaN	NaN	9.3583E-06	1	20580	115.41	100.26	1	5221300			20108	547	16962	17449	20108	20108		
VDNEFLNMLLDK	12	Unmodified	_VDNEFLNMLLDK_			0	0	0	Q8IX01	Q8IX01	Q8IX01	SUGP2	SURP and G-patch domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.86596	1449.71737	0.38786	0.00028154	-0.53194	-0.00038612	-0.14408	-0.00010458	726.366464954261	18.585	0.16848	18.585	18.55	18.718	0	468	25	1.01159370163332	0.0161181521941178	1.01159370163332	409.031511997713	0	6.51727284573286						180	20	4	NaN	NaN	NaN	0.010526	1	16976	39.702	36.824	1	34571			20109	2209	16963	17450	20109	20109		
VDNIQAGELTEGIWR	15	Unmodified	_VDNIQAGELTEGIWR_			0	0	0	Q08945	Q08945	Q08945	SSRP1	FACT complex subunit SSRP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.933751	1699.85295	2.2012	0.0018731	2.425	0.0020635	4.6262	0.0039366	850.936137299177	14.205	0.21279	14.205	14.161	14.373	0	339	58	1.09798411722691	0.0380516101948882	1.09798411722691	443.34483464182	0	15.364507159097						659	25	5	NaN	NaN	NaN	3.9942E-06	1	24493	108.91	85.957	1	238930			20110	1579	16964	17451	20110	20110		
VDNLTYR	7	Unmodified	_VDNLTYR_			0	0	0	Q01130;Q9BRL6	Q01130	Q01130	SRSF2;SRSF8	Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.729792	879.445031	-0.61329	-0.0002703	0.31342	0.00013813	-0.29988	-0.00013216	440.729943817356	4.0686	0.19508	4.0686	4.0154	4.2105	0	816	37	0.775960037304758	0.0245693858878535	0.775960037304758	315.670084577664	0	9.99512829060023						505	23	4	NaN	NaN	NaN	0.0082587	1	2000	85.813	62.504	1	282530			20111	1514	16965	17452	20111	20111		
VDNSSLTGESEPQTR	15	Unmodified	_VDNSSLTGESEPQTR_			0	0	0	P05023;P13637;P50993;P20648	P05023	P05023	ATP1A1;ATP1A3;ATP1A2;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Potassium-transporting ATPase alpha chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.379005	1618.74346	3.6127	0.0029276	-2.8222	-0.0022871	0.79045	0.00064056	810.376690200508	4.4056	0.25714	4.4056	4.3435	4.6007	0	444	82	1.02770517576159	0.0542974937279912	1.02770517576159	415.135682282614	0	21.9331649159999						1022	30	4	NaN	NaN	NaN	2.9858E-24	1	22143	176.58	156.4	1	299990			20112	522	16966	17453	20112	20112		
VDNVEVLDHEEEK	13	Unmodified	_VDNVEVLDHEEEK_			0	0	0	O00443	O00443	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.867742	1553.72093	2.6342	0.0020491	-0.77698	-0.00060439	1.8572	0.0014447	777.866717227845	5.5494	0.079797	5.5494	5.5139	5.5937	0	354	28	1.08796502040166	0.018041831774515	1.08796502040166	439.633311279284	0	7.29048277824728						130	10	3	NaN	NaN	NaN	0.0021884	1	20167	54.199	48.171	1	25402			20113	80	16967	17454	20113	20113		
VDPALFPPVPLFTAVPSR	18	Unmodified	_VDPALFPPVPLFTAVPSR_			0	0	0	Q13724	Q13724	Q13724	MOGS	Mannosyl-oligosaccharide glucosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.040561	1922.06657	1.8278	0.0017584	-1.195	-0.0011496	0.63278	0.00060876	962.540833738871	19.809	0.11528	19.809	19.774	19.889	0	228	106	1.17191150690002	0.0696722634877489	1.17191150690002	472.752602734438	0	28.1059992228942						817	14	3	NaN	NaN	NaN	0.0031614	1	30110	35.246	32.699	1	191700			20114	1701	16968	17455	20114	20114		
VDPEDTNLNQDSAK	14	Unmodified	_VDPEDTNLNQDSAK_			0	0	0	Q5F1R6	Q5F1R6	Q5F1R6	DNAJC21	DnaJ homolog subfamily C member 21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.354999	1544.69544	2.4386	0.0018859	-2.2262	-0.0017217	0.21238	0.00016425	773.353212482652	4.6805	0.11529	4.6805	4.6184	4.7337	0	471	52	1.00957851518677	0.0342439860536077	1.00957851518677	407.979344984422	0	13.8382887409425						374	14	3	NaN	NaN	NaN	0.0071065	1	19869	29.131	24.603	1	68908			20115	1961	16969	17456	20115	20115		
VDPLVSLMMVEK	12	Unmodified	_VDPLVSLMMVEK_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.864374	1359.7142	0.24108	0.00016414	-0.57758	-0.00039326	-0.33651	-0.00022911	680.864469603249	17.397	0.23942	17.397	17.246	17.486	0	543	37	0.961130371139249	0.0242609491796308	0.961130371139249	388.870043791345	0	9.81589662879958						624	28	5	NaN	NaN	NaN	0.00067216	1	14195	50.09	47.61	1	180980			20116	1369	16970	17457	20116	20116		
VDPMAIVVFHQADIGEYVR	19	Unmodified	_VDPMAIVVFHQADIGEYVR_			0	0	0	Q9Y221	Q9Y221	Q9Y221	NIP7	60S ribosome subunit biogenesis protein NIP7 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.36998	2158.08811	-0.42916	-0.00030916	-1.0104	-0.00072789	-1.4396	-0.001037	720.703648065667	16.998	0.15963	16.998	16.918	17.078	0	606	34	0.918606045818476	0.0223086119453004	0.918606045818476	555.415020668278	0	13.4884134728721						443	19	4	NaN	NaN	NaN	1.6358E-05	1	34150	57.62	56.251	1	115350			20117	3323	16971	17458	20117	20117		
VDPSLMEDSDDGPSLPTK	18	Unmodified	_VDPSLMEDSDDGPSLPTK_			0	0	0	O15258	O15258	O15258	RER1	Protein RER1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.935496	1901.85644	2.687	0.0025578	-2.1332	-0.0020307	0.55381	0.00052719	952.435228012899	10.862	0.15076	10.862	10.817	10.968	0	249	70	1.15795408347545	0.0458916612030629	1.15795408347545	467.157717566604	0	18.5142433615481						474	18	5	NaN	NaN	NaN	0.0001354	1	29635	76.196	65.224	1	139690			20118	157	16972	17459	20118	20118		
VDPTVENEETFMNR	14	Unmodified	_VDPTVENEETFMNR_			0	0	0	Q9UBU8	Q9UBU8	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.880327	1679.7461	1.538	0.0012933	1.4032	0.0011799	2.9411	0.0024731	840.882135215313	9.3278	0.14191	9.3278	9.2834	9.4253	0	390	55	1.06389100039157	0.0361459094054593	1.06389100039157	429.620277851126	0	14.5964348192057						340	17	3	NaN	NaN	NaN	4.7587E-05	1	23899	74.524	71.019	1	76987			20119	3190	16973	17460	20119	20119		
VDPVVIMQVIHPDGTK	16	Unmodified	_VDPVVIMQVIHPDGTK_			0	0	0	Q9BQG2	Q9BQG2	Q9BQG2	NUDT12	Peroxisomal NADH pyrophosphatase NUDT12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.474197	1746.93384	1.6065	0.0014049	-1.0567	-0.0009241	0.54978	0.00048077	874.471943725411	14.577	0.12414	14.577	14.533	14.657	0	216	19	1.17988115188462	0.0119511838070987	1.17988115188462	476.309439994439	0	4.82460598454105						158	15	3	NaN	NaN	NaN	4.62E-05	1	25814	70.598	68.119	1	26909			20120	2699	16974	17461	20120	20120		
VDQALHTQTDADPAEEYAR	19	Unmodified	_VDQALHTQTDADPAEEYAR_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.49035	2128.96614	1.7256	0.0018386	0.33989	0.00036215	2.0655	0.0022008	1065.99211737985	6.4274	0.062051	6.4274	6.4008	6.4629	0	135	37	1.23356193185193	0.0238204996792182	1.23356193185193	497.27577303571	0	9.60256399473741						225	8	3	NaN	NaN	NaN	0.052071	1	33723	36.902	36.15	1	45339			20121	1225	16975	17462	20121	20121		
VDQALHTQTDADPAEEYAR	19	Unmodified	_VDQALHTQTDADPAEEYAR_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.662657	2128.96614	1.6076	0.0011425	0.84679	0.00060178	2.4544	0.0017443	710.997328516947	6.4363	0.13299	6.4363	6.3831	6.5161	0	603	40	0.920633820089869	0.0263610708448411	0.920633820089869	556.689710502408	0	15.9400367191762						372	16	5	NaN	NaN	NaN	0.00048575	1	33724	61.867	60.772	1	119310			20122	1225	16975	17462	20122	20122		
VDQDSALHNDLQILK	15	Unmodified	_VDQDSALHNDLQILK_			0	0	0	Q7Z7E8	Q7Z7E8	Q7Z7E8	UBE2Q1	Ubiquitin-conjugating enzyme E2 Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.300331	1707.87916	-0.63949	-0.0003647	-0.87281	-0.00049777	-1.5123	-0.00086247	570.299755079019	10.888	0.070965	10.888	10.853	10.924	0	762	28	0.812773098473386	0.018384767783428	0.812773098473386	492.252146796293	0	11.1346468365429						175	9	4	NaN	NaN	NaN	0.0001271	1	24702	46.358	36.616	1	46369			20123	2151	16976	17463	20123	20123		
VDQFDPFTVPTISFICR	17	Unmodified	_VDQFDPFTVPTISFICR_			0	0	0	P49642	P49642	P49642	PRIM1	DNA primase small subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1021.50623	2040.9979	0.99814	0.0010196	0.20056	0.00020487	1.1987	0.0012245	1022.0081997873	19.641	0.062079	19.641	19.605	19.667	0	198	37	1.1918274123006	0.0238826831723766	1.1918274123006	480.58586907444	0	9.63032057306913						175	8	3	NaN	NaN	NaN	0.00010883	1	32357	79.235	70.079	1	33935			20124	1140	16977	17464	20124	20124		
VDQIQEIVTGNPTVIK	16	Unmodified	_VDQIQEIVTGNPTVIK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.488359	1752.96216	2.3297	0.0020443	-0.90579	-0.00079482	1.424	0.0012495	877.487206191253	13.123	0.17742	13.123	13.026	13.203	0	300	64	1.12400150285141	0.0419933988669257	1.12400150285141	453.738945640016	0	16.9519706845431						794	21	5	NaN	NaN	NaN	5.6011E-12	1	25988	135.24	123.22	1	475230			20125	1095	16978	17465	20125	20125		
VDQLTAQLADLAAR	14	Unmodified	_VDQLTAQLADLAAR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.907005	1483.79946	1.5339	0.0011396	-1.1854	-0.00088064	0.34851	0.00025891	742.906686241185	14.515	0.133	14.515	14.471	14.604	0	417	43	1.04580932352505	0.0281406425229616	1.04580932352505	422.774559704391	0	11.3760199730698						326	16	4	NaN	NaN	NaN	0.001252	1	18034	76.563	64.545	1	85579			20126	753	16979	17466	20126	20126		
VDQMEGGAAGPSASVR	16	Unmodified	_VDQMEGGAAGPSASVR_			0	0	0	O94901	O94901	O94901	SUN1	SUN domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.362104	1530.70965	2.5006	0.0019164	-0.068915	-5.2814E-05	2.4317	0.0018636	766.361982645492	4.7958	0.088678	4.7958	4.7514	4.8401	0	438	28	1.03173026378327	0.0181116473716121	1.03173026378327	416.96488648546	0	7.31966605561871						138	11	3	NaN	NaN	NaN	0.001171	1	19451	48.363	44.858	1	25759			20127	393	16980	17467	20127	20127		
VDQSAVGFEYQGK	13	Unmodified	_VDQSAVGFEYQGK_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.343706	1426.67286	2.426	0.001733	0.052323	3.7377E-05	2.4783	0.0017703	714.344309647283	7.3762	0.15073	7.3762	7.3142	7.4649	0	498	103	0.991429299781895	0.0685401059833448	0.991429299781895	400.939362457754	0	27.7179889698587						867	18	6	NaN	NaN	NaN	1.0955E-16	1	16275	209.43	200.95	1	704770			20128	1742	16981	17468	20128	20128		
VDQSILTGESVSVIK	15	Unmodified	_VDQSILTGESVSVIK_			0	0	0	P16615;O14983	P16615	P16615	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.935428	1573.8563	1.798	0.0014167	0.96975	0.0007641	2.7678	0.0021808	787.936159772234	12.325	0.12414	12.325	12.272	12.396	0	366	40	1.07994477139643	0.0260712032771278	1.07994477139643	436.343104126137	0	10.5338625340402						394	15	4	NaN	NaN	NaN	3.4508E-08	1	20796	104.49	85.983	1	134420			20129	730	16982	17469	20129	20129		
VDQSILTGESVSVIK	15	Unmodified	_VDQSILTGESVSVIK_			0	0	0	P16615;O14983	P16615	P16615	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.935428	1573.8563	2.056	0.00162	1.1552	0.00091025	3.2112	0.0025303	787.936402705575	12.325	0.1596	12.325	12.272	12.431	0	276	73	1.13998907770044	0.0479759546023661	1.13998907770044	460.603528257065	0	19.3843032302784						664	19	5	NaN	NaN	NaN	8.382E-10	1	20797	121.69	110.34	1	262370			20130	730	16982	17469	20130	20130		
VDQSLHTNTSLDAASEYAK	19	Unmodified	_VDQSLHTNTSLDAASEYAK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.48982	2048.96508	2.7403	0.0028102	-1.2096	-0.0012404	1.5308	0.0015698	1025.99017874829	7.7576	0.044348	7.7576	7.7309	7.7753	0	174	31	1.20774045859593	0.0198831199415834	1.20774045859593	486.989767435375	0	8.01734833616348						119	6	3	NaN	NaN	NaN	0.001502	1	32519	41.284	38.568	1	22395			20131	2804	16983	17470	20131	20131		
VDQSLHTNTSLDAASEYAK	19	Unmodified	_VDQSLHTNTSLDAASEYAK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.995636	2048.96508	1.6621	0.0011369	0.12794	8.7512E-05	1.7901	0.0012244	684.330025848781	7.7576	0.088725	7.7576	7.7221	7.8108	0	609	28	0.916577990479294	0.0182524998058907	0.916577990479294	554.377332085623	0	11.0397284807065						195	11	4	NaN	NaN	NaN	0.0012475	1	32520	60.324	59.229	1	45813			20132	2804	16983	17470	20132	20132		
VDQYLYHMR	9	Unmodified	_VDQYLYHMR_			0	0	0	P52789	P52789	P52789	HK2	Hexokinase-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.79514	1223.57573	1.4458	0.000886	-0.43708	-0.00026784	1.0088	0.00061816	612.794132532126	6.2411	0.15079	6.2411	6.1968	6.3476	0	543	61	0.961130371139249	0.0404629208582415	0.961130371139249	389.305153096867	0	16.3894764669569						329	18	4	NaN	NaN	NaN	0.0047803	1	10115	69.905	60.927	1	93775			20133	1223	16984	17471	20133	20133		
VDREQLVQK	9	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VDREQLVQK_			1	0	1	P61981	P61981	P61981	YWHAG	14-3-3 protein gamma;14-3-3 protein gamma, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.81967	1155.62479	1.3629	0.00078887	-0.93617	-0.00054187	0.42673	0.000247	578.820079696345	5.576	0.13307	5.576	5.5405	5.6736	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	375.611518582096	0	6.57190808579685						240	16	4	NaN	NaN	NaN	0.012312	1	8225	63.397	21.323	1	71489			20134	1361	16985	17472	20134	20134		
VDSAATSGYEIGNPPDYR	18	Unmodified	_VDSAATSGYEIGNPPDYR_			0	0	0	P24666	P24666	P24666	ACP1	Low molecular weight phosphotyrosine protein phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.439594	1910.86464	2.6909	0.0025736	-2.172	-0.0020774	0.51883	0.00049623	956.437593658497	8.9642	0.33723	8.9642	8.7156	9.0528	0	288	97	1.13199748998575	0.0639151911157265	1.13199748998575	456.67035970968	0	25.784662577387						2015	39	4	NaN	NaN	NaN	2.0544E-14	1	29847	167.01	160.16	1	585060			20135	831	16986	17473	20135	20135		
VDSDDQWGEYSCVFLPEPMGTANIQLHGPPR	31	Unmodified	_VDSDDQWGEYSCVFLPEPMGTANIQLHGPPR_			0	0	0	P35613	P35613	P35613	BSG	Basigin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1172.53801	3514.59219	1.8524	0.002172	0.16369	0.00019193	2.016	0.0023639	1173.20639172051	17.362	0.12415	17.362	17.3	17.424	0	330	52	1.10399226369747	0.0340227398849529	1.10399226369747	665.855696958947	0	20.5202843565905						576	15	5	NaN	NaN	NaN	0.01326	1	38657	18.138	18.138	1	101640			20136	976	16987	17474	20136	20136		
VDSDKEDDITELK	13	Unmodified	_VDSDKEDDITELK_			0	0	1	P52306	P52306	P52306	RAP1GDS1	Rap1 GTPase-GDP dissociation stimulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.862125	1505.7097	2.3739	0.0017896	0.055799	4.2065E-05	2.4297	0.0018317	753.862431624683	5.5937	0.11531	5.5937	5.5494	5.6647	0	432	34	1.035754240522	0.022130347528504	1.035754240522	418.653426147974	0	8.94511984810623						250	14	4	NaN	NaN	NaN	0.066489	1	18671	62.454	55.707	1	57391			20137	1210	16988	17475	20137	20137		
VDSDTLCTEEVFPTAGAGTDLR	22	Unmodified	_VDSDTLCTEEVFPTAGAGTDLR_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1177.54446	2353.07437	1.493	0.0017581	-1.0475	-0.0012335	0.44549	0.00052459	1178.04377207665	13.575	0.062079	13.575	13.54	13.602	0	78	34	1.27121832677567	0.0217712237935928	1.27121832677567	512.139428209285	0	8.77103631234422						159	8	3	NaN	NaN	NaN	2.7019E-11	1	36074	105.19	96.063	1	27482			20138	877	16989	17476	20138	20138		
VDSLIPWIK	9	Unmodified	_VDSLIPWIK_			0	0	0	Q9UPN3	Q9UPN3	Q9UPN3	MACF1	Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.815867	1069.61718	-1.0902	-0.00058414	-0.93497	-0.00050097	-2.0252	-0.0010851	535.815086781758	16.377	0.11528	16.377	16.307	16.422	0	675	22	0.871889544407995	0.0142417532513394	0.871889544407995	353.724665438955	0	5.77786422191201						156	14	2	NaN	NaN	NaN	0.012689	1	5951	45.489	32.662	1	38265			20139	3311	16990	17477	20139	20139		
VDSLLENLEK	10	Unmodified	_VDSLLENLEK_			0	0	0	P07910;O60812;B7ZW38;B2RXH8;P0DMR1	P07910	P07910	HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.313886	1158.61322	0.23594	0.00013692	0.79297	0.00046017	1.0289	0.00059709	580.314355529672	11.997	0.49659	11.997	11.926	12.423	0	615	94	0.912521036363781	0.0628436540510802	0.912521036363781	369.847051333488	0	25.4706896823232						1411	57	2	NaN	NaN	NaN	8.3296E-06	1	8327	126.82	57.109	1	2454000			20140	568	16991	17478	20140	20140		
VDSLLHGTFSAK	12	Unmodified	_VDSLLHGTFSAK_			0	0	0	Q9UJA5	Q9UJA5	Q9UJA5	TRMT6	tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.840602	1273.66665	1.4205	0.00090606	1.145	0.00073031	2.5655	0.0016364	637.841148698261	7.9438	0.11533	7.9438	7.9083	8.0237	0	498	22	0.991429299781895	0.0141238631290448	0.991429299781895	401.401484187008	0	5.71834988505981						132	14	3	NaN	NaN	NaN	0.006807	1	11602	40.533	31.019	1	26010			20141	3246	16992	17479	20141	20141		
VDSQASITQDSDSIK	15	Unmodified	_VDSQASITQDSDSIK_			0	0	0	Q6KC79	Q6KC79	Q6KC79	NIPBL	Nipped-B-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.383756	1592.75296	2.4967	0.0019908	-1.275	-0.0010167	1.2217	0.00097419	797.382962968066	5.7091	0.079795	5.7091	5.6736	5.7534	0	381	37	1.06991323971056	0.0240806587960416	1.06991323971056	432.2452168133	0	9.72859218483728						176	10	3	NaN	NaN	NaN	0.033997	1	21348	19.89	15.363	1	37362			20142	2042	16993	17480	20142	20142		
VDTCHTPFGK	10	Unmodified	_VDTCHTPFGK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.271498	1160.52844	1.4158	0.00082295	5.8555	0.0034036	7.2712	0.0042266	581.274503447969	4.1573	0.2217	4.1573	4.0598	4.2815	0	636	34	0.898312834727904	0.0223302721813649	0.898312834727904	364.081341937316	0	9.05033875429308						378	26	3	NaN	NaN	NaN	0.00079749	1	8350	78.816	66.22	1	83336			20143	1218	16994	17481	20143	20143		
VDTEDIEK	8	Unmodified	_VDTEDIEK_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	474.729655	947.444756	0.72668	0.00034498	2.2118	0.00105	2.9385	0.001395	474.730608373636	3.581	0.19505	3.581	3.5366	3.7317	0	711	28	0.847456455381371	0.018341368585978	0.847456455381371	344.375220694302	0	7.45325947371447						295	23	3	NaN	NaN	NaN	0.036157	1	3191	36.211	27.448	1	63716			20144	3172	16995	17482	20144	20144		
VDTILEFSQNMNTK	14	Unmodified	_VDTILEFSQNMNTK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.403437	1638.79232	1.5337	0.0012583	-1.4387	-0.0011803	0.095038	7.7969E-05	820.901900176809	13.105	0.17735	13.105	13.043	13.221	0	336	61	1.09998710857178	0.0400184925300473	1.09998710857178	444.28742885491	0	16.1635650220567						356	21	2	NaN	NaN	NaN	1.3773E-05	1	22725	121.96	102.64	1	73463			20145	135	16996	17483	20145	20145		
VDTMIVQAISLLDDLDK	17	Unmodified	_VDTMIVQAISLLDDLDK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.000442	1887.98633	1.128	0.001066	-0.86259	-0.00081515	0.26542	0.00025082	945.501202192159	20.19	0.044346	20.19	20.19	20.235	0	213	37	1.18187287897418	0.0238990877205962	1.18187287897418	476.832730753337	0	9.64221064977528						146	6	5	NaN	NaN	NaN	2.0302E-10	1	29331	122.2	104.78	1	56658			20146	3357	16997	17484	20146	20146		
VDTVNHLADELINSGHSDAATIAEWK	26	Unmodified	_VDTVNHLADELINSGHSDAATIAEWK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	702.346514	2805.35695	0.24928	0.00017508	-0.25734	-0.00018074	-0.0080589	-5.6601E-06	702.597193279009	16.271	0.1064	16.271	16.236	16.342	0	531	25	0.969216233931596	0.0161694889209075	0.969216233931596	780.199341490053	0	13.0161094776021						294	13	5	NaN	NaN	NaN	6.8418E-10	1	37909	100.23	96.66	1	91951			20147	1511	16998	17485	20147	20147		
VDVADQAQDK	10	Unmodified	_VDVADQAQDK_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.76456	1087.51457	1.1672	0.00063582	1.0184	0.00055481	2.1856	0.0011906	544.764598109246	2.907	0.24827	2.907	2.8538	3.102	0	684	34	0.86578508874114	0.0223923326891349	0.86578508874114	351.174584538469	0	9.08264444746658						383	29	3	NaN	NaN	NaN	0.0092967	1	6393	64.064	41.678	1	136550			20148	824	16999	17486	20148	20148		
VDVDVPDVNIEGPDAK	16	Unmodified	_VDVDVPDVNIEGPDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.417599	1680.82065	2.0251	0.001704	0.39644	0.00033357	2.4216	0.0020376	841.418004282727	12.157	0.24832	12.157	12.094	12.343	0	369	97	1.07793901817685	0.0641620688168467	1.07793901817685	435.290872528274	0	25.9097800965974						1232	29	5	NaN	NaN	NaN	1.1814E-08	1	23937	132.93	123.67	1	747500			20149	1584	17000	17487	20149	20149		
VDVECPDVNIEGPEGK	16	Unmodified	_VDVECPDVNIEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.906541	1755.79853	3.3521	0.0029462	-1.2517	-0.0011002	2.1003	0.001846	878.905578310414	9.7268	0.19508	9.7268	9.647	9.842	0	351	55	1.08996939197032	0.0360712461548371	1.08996939197032	439.995225769111	0	14.5611209017354						759	23	5	NaN	NaN	NaN	0.00019773	1	26044	84.58	77.833	1	244530			20150	1584	17001	17488	20150	20150		
VDVEGPDVNIEGPEGK	16	Unmodified	_VDVEGPDVNIEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	827.401949	1652.78935	2.3821	0.001971	-2.7913	-0.0023096	-0.40923	-0.00033859	827.399719486417	9.5583	0.26601	9.5583	9.4164	9.6824	0	402	73	1.05585747106793	0.0481879139637287	1.05585747106793	426.433090305841	0	19.4618323306088						1016	31	4	NaN	NaN	NaN	7.5097E-07	1	23129	111.38	88.424	1	427110			20151	1584	17002	17489	20151	20151		
VDVEVPDVSLEGPEGK	16	Unmodified	_VDVEVPDVSLEGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.919975	1667.8254	3.3157	0.0027683	-1.8171	-0.0015171	1.4986	0.0012512	834.918746502275	12.884	0.21282	12.884	12.795	13.008	0	399	61	1.0578662689527	0.0401565865684175	1.0578662689527	427.212365322065	0	16.2169745218723						995	25	5	NaN	NaN	NaN	1.9796E-08	1	23574	88.42	80.862	1	483280			20152	1584	17003	17490	20152	20152		
VDVFTNLGYR	10	Unmodified	_VDVFTNLGYR_			0	0	0	Q86W42	Q86W42	Q86W42	THOC6	THO complex subunit 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.308938	1182.60332	0.29466	0.00017453	-1.5588	-0.00092329	-1.2641	-0.00074876	592.30811856716	12.29	0.15076	12.29	12.227	12.378	0	615	28	0.912521036363781	0.018260091794093	0.912521036363781	369.758791492949	0	7.39909460195997						196	18	2	NaN	NaN	NaN	0.03632	1	8942	37.591	32.684	1	65345			20153	2177	17004	17491	20153	20153		
VDVIFCDK	8	Unmodified	_VDVIFCDK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.24696	994.479368	-0.5452	-0.00027164	-0.61658	-0.00030721	-1.1618	-0.00057885	498.246119784843	8.7778	0.15966	8.7778	8.6891	8.8487	0	723	55	0.839303037468863	0.0366852964336388	0.839303037468863	340.831227671825	0	14.8974733353635						327	19	3	NaN	NaN	NaN	0.028599	1	4149	51.864	37.329	1	84467			20154	2452	17005	17492	20154	20154		
VDVNAPDVQAPDWHLK	16	Unmodified	_VDVNAPDVQAPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.972326	1802.89515	0.30047	0.00018087	-0.031744	-1.9109E-05	0.26873	0.00016177	602.306591724305	11.438	0.1419	11.438	11.376	11.518	0	636	94	0.898312834727904	0.062965752002623	0.898312834727904	543.828257312475	0	38.1187419996375						861	17	4	NaN	NaN	NaN	0.00015063	1	27286	90.156	87.677	1	275360			20155	1584	17006	17493	20155	20155		
VDVNAPDVQAPDWHLK	16	Unmodified	_VDVNAPDVQAPDWHLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.45485	1802.89515	1.8309	0.0016523	0.1992	0.00017977	2.0301	0.0018321	902.455138735088	11.438	0.070957	11.438	11.403	11.474	0	306	46	1.12000185836644	0.0299870223573788	1.12000185836644	452.026087369191	0	12.1025838366274						213	9	2	NaN	NaN	NaN	0.043027	1	27288	24.922	23.869	1	55526			20156	1584	17006	17493	20156	20156		
VDVSAPDVEAHGPEWNLK	18	Unmodified	_VDVSAPDVEAHGPEWNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.990045	1961.94831	0.99317	0.00065052	3.093	0.0020259	4.0862	0.0026764	655.326796836752	11.004	0.25716	11.004	10.933	11.19	0	663	151	0.880024865079826	0.101424156912735	0.880024865079826	532.427459107898	0	61.3630458638348						1476	30	5	NaN	NaN	NaN	0.0010409	1	30958	77.696	51.991	1	503370			20157	1584	17007	17494	20157	20157		
VDWLTEK	7	Unmodified	_VDWLTEK_			0	0	0	P38919;P60842;Q14240	P38919;P60842;Q14240	P60842	EIF4A3;EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed;Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.734543	889.454533	-1.1818	-0.00052678	-1.2564	-0.00056004	-2.4383	-0.0010868	445.734168324709	8.5116	0.21282	8.5116	8.4406	8.6534	0	804	58	0.78414869089473	0.0388717579891509	0.78414869089473	318.946169824795	0	15.8107747535096						717	25	4	NaN	NaN	NaN	0.0080293	1	2143	78.178	45.207	1	489320			20158	1311;1008;1739	17008	17495	20158	20158		
VDYIMQLPVPMDAALNK	17	Unmodified	_VDYIMQLPVPMDAALNK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	959.494272	1916.97399	0.77229	0.00074101	2.0561	0.0019728	2.8284	0.0027138	959.997588109291	18.133	0.088662	18.133	18.089	18.178	0	210	37	1.18386433251387	0.0239023706584269	1.18386433251387	477.583490763789	0	9.6424711033751						229	11	3	NaN	NaN	NaN	0.014652	1	29996	20.966	16.15	1	39459			20159	1072	17009	17496	20159	20159		
VDYYEVLGVQR	11	Unmodified	_VDYYEVLGVQR_			0	0	0	O75190	O75190	O75190	DNAJB6	DnaJ homolog subfamily B member 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.845884	1339.67722	0.78986	0.00052988	2.7514	0.0018458	3.5413	0.0023756	670.847576712658	12.511	0.17732	12.511	12.449	12.626	0	516	43	0.979317271586824	0.0282692223025561	0.979317271586824	396.288021738476	0	11.4393511759606						412	21	4	NaN	NaN	NaN	0.0063502	1	13582	44.57	37.879	1	101760			20160	312	17010	17497	20160	20160		
VEAAIALQVLISNQEK	16	Unmodified	_VEAAIALQVLISNQEK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.490901	1724.96725	0.95319	0.00082307	0.83653	0.00072234	1.7897	0.0015454	863.491494077437	16.679	0.23942	16.679	16.617	16.856	0	189	28	1.1977968526266	0.0179034061988514	1.1977968526266	483.590348860885	0	7.22819936495495						319	28	3	NaN	NaN	NaN	0.00020706	1	25201	65.173	47.075	1	54711			20161	429	17011	17498	20161	20161		
VEAALALQSLISNQIQAK	18	Unmodified	_VEAALALQSLISNQIQAK_			0	0	0	O15397	O15397	O15397	IPO8	Importin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.04129	1896.06803	0.90085	0.00085494	0.42273	0.00040119	1.3236	0.0012561	949.542870898317	17.796	0.079803	17.796	17.77	17.849	0	105	31	1.25339330680955	0.0198205070176776	1.25339330680955	505.672288915093	0	7.99643742840692						167	10	3	NaN	NaN	NaN	1.226E-06	1	29524	66.619	58.654	1	34692			20162	172	17012	17499	20162	20162		
VEAFLITMEK	10	Unmodified	_VEAFLITMEK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.81775	1179.62095	0.57851	0.00034179	-2.125	-0.0012555	-1.5465	-0.00091368	590.816736310011	13.221	0.21282	13.221	13.088	13.3	0	600	40	0.922661313351899	0.0263537653577723	0.922661313351899	373.878592004702	0	10.6790092349177						256	25	3	NaN	NaN	NaN	0.0043715	1	8876	47.561	29.158	1	86884			20163	702	17013	17500	20163	20163		
VEAGDVIYIEANSGAVK	17	Unmodified	_VEAGDVIYIEANSGAVK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.949066	1733.88358	1.3129	0.0011395	0.33858	0.00029387	1.6515	0.0014334	867.949419704291	11.695	0.070927	11.695	11.66	11.731	0	177	34	1.2057522832638	0.02187293336483	1.2057522832638	486.782265773642	0	8.83046726117487						194	9	3	NaN	NaN	NaN	0.00017364	1	25444	53.051	44.677	1	47903			20164	3331	17014	17501	20164	20164		
VEANSTLLNVHIVFEGEK	18	Unmodified	_VEANSTLLNVHIVFEGEK_			0	0	0	Q9UHD1	Q9UHD1	Q9UHD1	CHORDC1	Cysteine and histidine-rich domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.021345	1998.04221	0.54242	0.00036181	0.43031	0.00028703	0.97273	0.00064883	667.355495712927	14.196	0.11525	14.196	14.152	14.267	0	585	55	0.932794566565362	0.0364822520341863	0.932794566565362	564.282337818571	0	22.0694793951659						369	14	3	NaN	NaN	NaN	8.5376E-05	1	31602	57.62	53.313	1	84066			20165	3213	17015	17502	20165	20165		
VEAPEYIPISDDPK	14	Unmodified	_VEAPEYIPISDDPK_			0	0	0	Q1ED39	Q1ED39	Q1ED39	KNOP1	Lysine-rich nucleolar protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.893229	1571.7719	2.1642	0.001703	-0.936	-0.00073653	1.2282	0.0009665	786.892683939642	10.613	0.22171	10.613	10.454	10.676	0	363	94	1.08195024817156	0.0622212962677171	1.08195024817156	437.158464618871	0	25.1403115706649						491	26	2	NaN	NaN	NaN	0.015047	1	20716	31.04	20.79	1	114310			20166	1918	17016	17503	20166	20166		
VEAPSLDVHMDSPDINIEGPDVK	23	Unmodified	_VEAPSLDVHMDSPDINIEGPDVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	826.400333	2476.17917	1.8524	0.0015309	-1.3266	-0.0010963	0.52587	0.00043458	826.733703931103	13.859	0.079815	13.859	13.832	13.912	0	552	58	0.955063035883597	0.0384317920683693	0.955063035883597	576.983695144589	0	23.2178574245846						519	10	5	NaN	NaN	NaN	2.1519E-09	1	36715	122.94	112.62	1	134950			20167	1584	17017	17504	20167	20167		
VEAQHILASAPTDR	14	Unmodified	_VEAQHILASAPTDR_			0	0	0	Q53H96	Q53H96	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.396804	1506.77906	2.2033	0.0016622	-3.7117	-0.0028001	-1.5084	-0.0011379	754.39391846896	6.1614	0.079801	6.1614	6.1259	6.2057	0	423	28	1.04178812298108	0.0180991506122403	1.04178812298108	421.089622982218	0	7.31565693588266						170	10	4	NaN	NaN	NaN	0.00012814	1	18704	98.167	67.818	1	40998			20168	1952	17018	17505	20168	20168		
VEAQHILASAPTDR	14	Unmodified	_VEAQHILASAPTDR_			0	0	0	Q53H96	Q53H96	Q53H96	PYCRL	Pyrroline-5-carboxylate reductase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.266962	1506.77906	-1.0639	-0.00053541	0.18242	9.1804E-05	-0.88146	-0.00044361	503.266993683902	6.1614	0.053189	6.1614	6.1347	6.1879	0	834	19	0.763668499782291	0.0122966759189851	0.763668499782291	463.008130145566	0	7.4554088925737						99	7	3	NaN	NaN	NaN	0.00032746	1	18706	95.656	88.099	1	23496			20169	1952	17018	17505	20169	20169		
VEAVNMAEGIIHDTETK	17	Unmodified	_VEAVNMAEGIIHDTETK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.640136	1855.89858	0.84009	0.00052055	-1.2722	-0.00078833	-0.43216	-0.00026778	619.639444868997	13.132	0.18622	13.132	13.061	13.247	0	603	49	0.920633820089869	0.0324376543962731	0.920633820089869	557.219745362703	0	19.6331061584184						671	22	5	NaN	NaN	NaN	3.851E-10	1	28605	117.77	103.4	1	418760			20170	1007	17019	17506	20170	20170		
VEAVNMAEGIIHDTETK	17	Unmodified	_VEAVNMAEGIIHDTETK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.956565	1855.89858	1.5565	0.0014459	0.79368	0.0007373	2.3502	0.0021832	928.957281657205	13.132	0.20394	13.132	13.034	13.238	0	222	46	1.17589687683038	0.0298882290597779	1.17589687683038	474.481508176646	0	12.0600813561462						626	24	5	NaN	NaN	NaN	1.6265E-25	1	28606	171.51	151.17	1	194790			20171	1007	17019	17506	20171	20171		
VEAVNMAEGIIHDTETK	17	Oxidation (M)	_VEAVNM(Oxidation (M))AEGIIHDTETK_	VEAVNM(1)AEGIIHDTETK	VEAVNM(65)AEGIIHDTETK	0	1	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.971774	1871.89349	1.4592	0.00091198	-2.7031	-0.0016893	-1.2438	-0.00077737	625.303607454083	9.7711	0.097549	9.7711	9.7445	9.842	0	606	31	0.918606045818476	0.0202763400038137	0.918606045818476	555.957217625594	0	12.2716126499112						183	12	3	NaN	NaN	NaN	1.5802E-05	1	28975	65.12	58.744	1	37007			20172	1007	17019	17507	20172	20172	359	
VECVGDDIAWMR	12	Unmodified	_VECVGDDIAWMR_			0	0	0	Q16822	Q16822	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.826311	1449.63807	0.91414	0.00066351	7.0974	0.0051515	8.0116	0.005815	725.8316377247	12.423	0.079776	12.423	12.387	12.467	0	477	37	1.0055473068722	0.0241839121258494	1.0055473068722	406.586871401822	0	9.7786161847435						158	10	3	NaN	NaN	NaN	0.025008	1	16959	54.584	53.434	1	34477			20173	1908	17020	17508	20173	20173		
VECYDYDNDGSHDLIGTFQTTMTK	24	Unmodified	_VECYDYDNDGSHDLIGTFQTTMTK_			0	0	0	O75131	O75131	O75131	CPNE3	Copine-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	937.402185	2809.18473	1.249	0.0011708	1.4319	0.0013423	2.6809	0.0025131	937.737696924629	13.664	0.088664	13.664	13.611	13.7	0	432	34	1.035754240522	0.0221334029246503	1.035754240522	625.317710703571	0	13.3626378782159						281	11	5	NaN	NaN	NaN	0.00029021	1	37921	36.943	36.565	1	52404			20174	304	17021	17509	20174	20174		
VEDALNLK	8	Unmodified	_VEDALNLK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.2531	900.491647	-0.34126	-0.00015399	0.72455	0.00032695	0.38329	0.00017296	451.253467596401	6.321	0.26603	6.321	6.2678	6.5338	0	744	49	0.82502364452135	0.0326590469526774	0.82502364452135	335.509197548689	0	13.281329218334						437	31	2	NaN	NaN	NaN	0.0032571	1	2333	70.67	40.108	1	145410			20175	1055	17022	17510	20175	20175		
VEDAMLMFDK	10	Unmodified	_VEDAMLMFDK_			0	0	0	Q96DH6	Q96DH6	Q96DH6	MSI2	RNA-binding protein Musashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.777767	1197.54098	-0.0021342	-1.28E-06	0.30177	0.000181	0.29964	0.00017972	599.777878037985	12.502	0.13297	12.502	12.458	12.591	0	609	28	0.916577990479294	0.0182550299424538	0.916577990479294	371.349259631728	0	7.39597931010803						195	16	4	NaN	NaN	NaN	0.0088308	1	9380	44.57	33.21	1	38495			20176	2505	17023	17511	20176	20176		
VEDLFLTFAK	10	Unmodified	_VEDLFLTFAK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.823889	1181.63323	0.0034997	2.0712E-06	-0.44334	-0.00026238	-0.43984	-0.00026031	591.823782883434	15.881	0.10639	15.881	15.837	15.943	0	573	31	0.940896116921038	0.0202510727946275	0.940896116921038	381.260142253126	0	8.20592917284409						199	13	3	NaN	NaN	NaN	0.0076033	1	8926	34.953	27.802	1	43858			20177	1703	17024	17512	20177	20177		
VEDMAELTCLNEASVLHNLK	20	Unmodified	_VEDMAELTCLNEASVLHNLK_			0	0	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.708332	2285.10317	1.4041	0.0010709	1.0324	0.00078745	2.4365	0.0018584	763.043618041282	15.136	0.20396	15.136	15.092	15.296	0	456	52	1.01965166402748	0.034239256244545	1.01965166402748	616.291024983092	0	20.6946617850474						674	24	6	NaN	NaN	NaN	9.2621E-23	1	35523	190.06	183.54	1	299570			20178	972	17025	17513	20178	20178		
VEDMAELTCLNEASVLHNLK	20	Oxidation (M)	_VEDM(Oxidation (M))AELTCLNEASVLHNLK_	VEDM(1)AELTCLNEASVLHNLK	VEDM(83)AELTCLNEASVLHNLK	0	1	0	P35579;P35580	P35579	P35579	MYH9;MYH10	Myosin-9;Myosin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	768.039971	2301.09808	1.3267	0.001019	-1.3131	-0.0010085	0.013603	1.0448E-05	768.372818835408	13.247	0.12415	13.247	13.167	13.292	1.7764E-15	453	46	1.02166545906632	0.030194421347751	1.02166545906632	617.482274328709	0	18.2491438859913						404	15	5	NaN	NaN	NaN	1.2612E-07	1	35650	82.822	81.947	1	98614			20179	972	17025	17514	20179	20179	353	
VEDPTFLNQLQSGVNR	16	Unmodified	_VEDPTFLNQLQSGVNR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.963039	1815.91153	2.0017	0.0018195	0.20962	0.00019054	2.2113	0.00201	909.465039433829	13.46	0.24832	13.46	13.371	13.62	0	276	64	1.13998907770044	0.041952970811898	1.13998907770044	460.067635545003	0	16.9310429924929						782	29	5	NaN	NaN	NaN	8.7891E-13	1	27634	160.52	113.16	1	263300			20180	1737	17026	17515	20180	20180		
VEDSGIFTIK	10	Unmodified	_VEDSGIFTIK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.797872	1107.58119	0.60512	0.00033572	-1.5203	-0.00084345	-0.91517	-0.00050774	554.797322932311	10.676	0.25712	10.676	10.596	10.853	0	636	49	0.898312834727904	0.032491664365396	0.898312834727904	364.28570805742	0	13.1760879971146						491	30	3	NaN	NaN	NaN	0.0076033	1	6926	34.953	19.371	1	171170			20181	1901	17027	17516	20181	20181		
VEDVSAVEIVGGATR	15	Unmodified	_VEDVSAVEIVGGATR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.39647	1500.77839	1.5418	0.0011585	-2.1442	-0.0016111	-0.6024	-0.00045264	751.896747085769	10.826	0.12416	10.826	10.755	10.879	0	453	28	1.02166545906632	0.0181241570782431	1.02166545906632	412.971086715203	0	7.32603101923331						225	15	4	NaN	NaN	NaN	2.2216E-06	1	18553	126.17	84.377	1	67989			20182	2415	17028	17517	20182	20182		
VEDVSAVEIVGGATR	15	Unmodified	_VEDVSAVEIVGGATR_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.39647	1500.77839	2.4579	0.0018469	-1.1669	-0.00087684	1.291	0.00097002	751.396366429151	10.835	0.40788	10.835	10.587	10.995	0	354	100	1.08796502040166	0.0662355835209707	1.08796502040166	439.770268025465	0	26.7733242996053						949	47	5	NaN	NaN	NaN	3.9974E-08	1	18554	126.21	114.86	1	311770			20183	2415	17028	17517	20183	20183		
VEDVVETLLQLHR	13	Unmodified	_VEDVVETLLQLHR_			0	0	0	Q92636	Q92636	Q92636	NSMAF	Protein FAN	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.622745	1549.84641	-1.9592	-0.0010141	-0.28975	-0.00014998	-2.2489	-0.0011641	517.956807496832	15.863	0.070932	15.863	15.837	15.908	1.7764E-15	762	28	0.812773098473386	0.018384767783428	0.812773098473386	492.655492553638	0	11.1437704383194						98	9	2	NaN	NaN	NaN	0.00030633	1	20054	57.888	52.737	1	25411			20184	2423	17029	17518	20184	20184		
VEDYEPYPDDGMGYGDYPK	19	Unmodified	_VEDYEPYPDDGMGYGDYPK_			0	0	0	O95169	O95169	O95169	NDUFB8	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.44897	2208.88338	1.6164	0.0017868	-0.79097	-0.00087437	0.82541	0.00091245	1105.94982028577	11.012	0.088663	11.012	10.968	11.057	0	114	70	1.24744674793813	0.0456153113582645	1.24744674793813	502.755108260413	0	18.3842162706846						323	11	3	NaN	NaN	NaN	3.2411E-07	1	34769	83.061	82.442	1	48954			20185	409	17030	17519	20185	20185		
VEEAEPEEFVVEK	13	Unmodified	_VEEAEPEEFVVEK_			0	0	0	Q13185	Q13185	Q13185	CBX3	Chromobox protein homolog 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.369586	1532.72462	1.6492	0.0012655	-0.86373	-0.0006628	0.78544	0.00060272	767.870049079613	9.3011	0.21283	9.3011	9.2391	9.4519	0	441	58	1.02971785871157	0.0382304341637099	1.02971785871157	416.146689948872	0	15.4503182575106						665	25	3	NaN	NaN	NaN	2.9279E-05	1	19510	103.76	87.473	1	267220			20186	1639	17031	17520	20186	20186		
VEEAIVAR	8	Unmodified	_VEEAIVAR_			0	0	0	Q15050	Q15050	Q15050	RRS1	Ribosome biogenesis regulatory protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.753267	885.491981	-0.23609	-0.00010476	0.13708	6.0828E-05	-0.099009	-4.3936E-05	443.7541591474	4.1839	0.12415	4.1839	4.1307	4.2549	0	747	34	0.822982596624503	0.0224515301209383	0.822982596624503	334.764307570827	0	9.13260008859061						246	15	3	NaN	NaN	NaN	0.010865	1	2082	51.43	23.725	1	76114			20187	1802	17032	17521	20187	20187		
VEEATVEER	9	Unmodified	_VEEATVEER_			0	0	0	Q14244	Q14244	Q14244	MAP7	Ensconsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.259111	1060.50367	1.3029	0.00069219	0.76927	0.00040868	2.0722	0.0011009	531.25948800586	2.8006	0.133	2.8006	2.774	2.907	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	356.239111455177	0	7.42640101222986						207	16	3	NaN	NaN	NaN	0.0012078	1	5733	84.368	43.343	1	39944			20188	1741	17033	17522	20188	20188		
VEEDVASDLVMK	12	Unmodified	_VEEDVASDLVMK_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.829043	1333.64353	1.355	0.00090494	-0.014687	-9.8084E-06	1.3404	0.00089513	667.828677613989	10.081	0.17734	10.081	10.019	10.197	0	525	25	0.973257487423603	0.0161605431921971	0.973257487423603	393.854088992109	0	6.53978633488811						186	21	3	NaN	NaN	NaN	0.025008	1	13389	47.334	36.547	1	50381			20189	3121	17034	17523	20189	20189		
VEEEDDAEHVLALTMLCLTEGAK	23	Unmodified	_VEEEDDAEHVLALTMLCLTEGAK_			0	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	858.4085	2572.20367	1.2986	0.0011147	-1.6124	-0.0013841	-0.31381	-0.00026937	858.741870731931	19.853	0.070933	19.853	19.836	19.907	0	513	61	0.981336640919867	0.0403957860305609	0.981336640919867	592.732898083318	0	24.3992839213706						393	9	6	NaN	NaN	NaN	3.0839E-24	1	37121	102.1	96.761	1	155470			20190	346	17035	17524	20190	20190		
VEEEHTNAIGTLHGGLTATLVDNISTMALLCTER	34	Unmodified	_VEEEHTNAIGTLHGGLTATLVDNISTMALLCTER_			0	0	0	Q9NPJ3	Q9NPJ3	Q9NPJ3	ACOT13	Acyl-coenzyme A thioesterase 13;Acyl-coenzyme A thioesterase 13, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	917.458004	3665.80291	0.48278	0.00044293	0.69215	0.00063502	1.1749	0.0010779	917.96023193848	19.046	0.062056	19.046	19.02	19.082	0	450	25	1.02367897599655	0.0161092490285764	1.02367897599655	823.086419415963	0	12.9525998025924						226	8	5	NaN	NaN	NaN	1.3164E-07	1	38706	45.705	38.951	1	46875			20191	2991	17036	17525	20191	20191		
VEEEIQTLSQVLAAK	15	Unmodified	_VEEEIQTLSQVLAAK_			0	0	0	P55327	P55327	P55327	TPD52	Tumor protein D52	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.453985	1656.89342	2.4161	0.002004	-2.3044	-0.0019114	0.11173	9.2675E-05	829.452977598197	15.26	0.18618	15.26	15.207	15.393	0	303	88	1.12200181823275	0.0579988938092726	1.12200181823275	453.137721201983	0	23.4237468655488						1233	22	5	NaN	NaN	NaN	2.7999E-06	1	23250	117.21	88.882	1	542200			20192	1274	17037	17526	20192	20192		
VEEFLYEK	8	Unmodified	_VEEFLYEK_			0	0	0	Q9NR46	Q9NR46	Q9NR46	SH3GLB2	Endophilin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.76604	1055.51753	0.42807	0.00022635	0.43185	0.00022835	0.85993	0.0004547	528.766213201837	8.0325	0.15089	8.0325	7.9704	8.1213	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	354.610159649885	0	8.25377488825814						194	18	2	NaN	NaN	NaN	0.072852	1	5599	39.324	33.094	1	58311			20193	3014	17038	17527	20193	20193		
VEEILEQADYLYESGETEK	19	Unmodified	_VEEILEQADYLYESGETEK_			0	0	0	Q96DB5	Q96DB5	Q96DB5	RMDN1	Regulator of microtubule dynamics protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1123.02335	2244.03215	0.24663	0.00027697	0.88978	0.00099924	1.1364	0.0012762	1123.52535834186	14.834	0.079773	14.834	14.79	14.87	1.7764E-15	111	49	1.24942920585258	0.0317171628708794	1.24942920585258	503.504786467223	0	12.7816311991451						224	10	3	NaN	NaN	NaN	2.039E-05	1	35140	53.773	53.409	1	38429			20194	2503	17039	17528	20194	20194		
VEEISPNIR	9	Unmodified	_VEEISPNIR_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.787838	1055.56112	0.54378	0.00028754	-2.6469	-0.0013996	-2.1031	-0.0011121	528.786205921475	6.1791	0.16851	6.1791	6.1081	6.2767	0	681	61	0.867820189810857	0.0407048667426549	0.867820189810857	352.133338492822	0	16.5167171578718						308	20	2	NaN	NaN	NaN	0.0011281	1	5610	98.009	73.158	1	75498			20195	3212	17040	17529	20195	20195		
VEEPETLVELQR	12	Unmodified	_VEEPETLVELQR_			0	0	0	Q8N5M1	Q8N5M1	Q8N5M1	ATPAF2	ATP synthase mitochondrial F1 complex assembly factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.380288	1440.74602	1.9177	0.0013834	-4.0455	-0.0029183	-2.1278	-0.0015349	721.375433108398	10.924	0.14189	10.924	10.879	11.021	0	438	40	1.03173026378327	0.0261684967549374	1.03173026378327	417.198171103364	0	10.5816891971849						186	17	3	NaN	NaN	NaN	0.0076537	1	16700	29.317	8.2289	1	42980			20196	2258	17041	17530	20196	20196		
VEEQEPELTSTPNFVVEVIK	20	Unmodified	_VEEQEPELTSTPNFVVEVIK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.061646	2286.16311	-0.16318	-0.00012452	-0.6279	-0.00047913	-0.79108	-0.00060364	763.395593650497	16.741	0.13301	16.741	16.688	16.821	0	558	64	0.951016745717027	0.042471368758535	0.951016745717027	574.805563910713	0	25.6701884370116						639	16	5	NaN	NaN	NaN	0.00069516	1	35530	77.431	69.784	1	196590			20197	1566	17042	17531	20197	20197		
VEEQEPELTSTPNFVVEVIK	20	Unmodified	_VEEQEPELTSTPNFVVEVIK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.061646	2286.16311	0.29936	0.00022843	0.71026	0.00054197	1.0096	0.0007704	763.396399848865	16.732	0.14188	16.732	16.688	16.83	0	453	67	1.02166545906632	0.0443126963387586	1.02166545906632	617.5064616068	0	26.7831079905651						700	17	5	NaN	NaN	NaN	0.0051276	1	35531	46.823	44.433	1	235500			20198	1566	17042	17531	20198	20198		
VEEQEPELTSTPNFVVEVIK	20	Unmodified	_VEEQEPELTSTPNFVVEVIK_			0	0	0	Q07021	Q07021	Q07021	C1QBP	Complement component 1 Q subcomponent-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.08883	2286.16311	0.17083	0.00019544	1.1048	0.001264	1.2756	0.0014594	1144.59155440279	16.732	0.24828	16.732	16.67	16.918	0	66	130	1.27913350869533	0.0852225162564235	1.27913350869533	515.416796347617	0	34.3397432769709						2931	29	7	NaN	NaN	NaN	9.1088E-38	1	35532	225.94	186.78	1	2614800			20199	1566	17042	17531	20199	20199		
VEESGEHVILGTGELYLDCVMHDLR	25	Unmodified	_VEESGEHVILGTGELYLDCVMHDLR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	957.793236	2870.35788	1.245	0.0011924	0.021924	2.0998E-05	1.2669	0.0012134	958.127733996426	18.967	0.070931	18.967	18.931	19.002	0	192	46	1.1958073123591	0.0298472092249094	1.1958073123591	721.871033575655	0	18.0178157047965						270	9	6	NaN	NaN	NaN	3.2824E-07	1	38034	78.925	77.964	1	61345			20200	1796	17043	17532	20200	20200		
VEESGEHVILGTGELYLDCVMHDLRK	26	Unmodified	_VEESGEHVILGTGELYLDCVMHDLRK_			0	0	1	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	750.620487	2998.45284	-0.16913	-0.00012695	1.6291	0.0012228	1.4599	0.0010959	750.872605875585	17.982	0.097544	17.982	17.947	18.045	0	501	22	0.98941132619024	0.0141277691793039	0.98941132619024	796.203078608914	0	11.368955475526						217	12	5	NaN	NaN	NaN	0.00069764	1	38222	29.971	29.948	1	47001			20201	1796	17044	17533	20201	20201		
VEESSWLIEDGK	12	Unmodified	_VEESSWLIEDGK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.338089	1390.66163	1.3047	0.00090853	0.11527	8.0269E-05	1.42	0.0009888	696.338769903258	10.268	0.34584	10.268	10.161	10.507	0	510	70	0.983355730988811	0.0464198396417231	0.983355730988811	397.773228829764	0	18.7771006098486						1176	40	5	NaN	NaN	NaN	1.8565E-07	1	15160	141.29	119.25	1	745320			20202	3332	17045	17534	20202	20202		
VEETTEHLVTK	11	Unmodified	_VEETTEHLVTK_			0	0	0	P52732	P52732	P52732	KIF11	Kinesin-like protein KIF11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	429.225992	1284.65615	-0.86885	-0.00037293	0.46557	0.00019983	-0.40328	-0.0001731	429.226212818623	3.4834	0.097654	3.4834	3.4479	3.5455	0	840	19	0.759569036796863	0.0123001033069321	0.759569036796863	461.245629390839	0	7.46919452549446						66	12	2	NaN	NaN	NaN	0.071484	1	11899	5.1508	1.543	1	13737			20203	1219	17046	17535	20203	20203		
VEFATLQEALAHALTEK	17	Unmodified	_VEFATLQEALAHALTEK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.335153	1869.98363	0.11907	7.434E-05	-0.91294	-0.00056998	-0.79387	-0.00049564	624.334414774514	18.355	0.11526	18.355	18.319	18.435	0	621	34	0.908462957275599	0.0223240803246195	0.908462957275599	549.822553888233	0	13.511043855985						379	14	5	NaN	NaN	NaN	2.6036E-10	1	28940	119.79	110.98	1	142200			20204	1782	17047	17536	20204	20204		
VEFATLQEALAHALTEK	17	Unmodified	_VEFATLQEALAHALTEK_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.999091	1869.98363	0.67097	0.00062803	0.40431	0.00037843	1.0753	0.0010065	936.501183287587	18.355	0.070923	18.355	18.328	18.399	0	123	34	1.24149774378079	0.0218189985517374	1.24149774378079	500.923862106239	0	8.8036060287489						199	9	4	NaN	NaN	NaN	2.8421E-10	1	28941	86.135	69.375	1	45275			20205	1782	17047	17536	20205	20205		
VEFEELCADLFER	13	Unmodified	_VEFEELCADLFER_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.882338	1655.75012	1.9634	0.0016275	0.52203	0.0004327	2.4855	0.0020602	828.882975830484	17.114	0.15072	17.114	17.06	17.211	0	342	43	1.09598084995137	0.0280476801589677	1.09598084995137	442.631276490008	0	11.3275523672683						576	18	4	NaN	NaN	NaN	1.0086E-16	1	23206	166.65	126.26	1	277410			20206	3410	17048	17537	20206	20206		
VEFETSEEVDVTPTFDTMGLR	21	Unmodified	_VEFETSEEVDVTPTFDTMGLR_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1201.55704	2401.09952	0.54442	0.00065416	0.6807	0.0008179	1.2251	0.0014721	1202.05918584414	16.111	0.13302	16.111	16.058	16.191	0	63	34	1.28111162701928	0.0217622834966473	1.28111162701928	516.064538404823	0	8.7664045431095						234	16	3	NaN	NaN	NaN	1.5141E-06	1	36354	58.794	57.699	1	43272			20207	1008	17049	17538	20207	20207		
VEFILEQMR	9	Unmodified	_VEFILEQMR_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.807716	1163.60088	0.36692	0.00021384	-0.93042	-0.00054226	-0.5635	-0.00032841	583.809668373763	13.425	0.24832	13.425	13.318	13.567	0	594	52	0.926715457081489	0.0344578460236871	0.926715457081489	375.581153778378	0	13.9651469794747						415	29	4	NaN	NaN	NaN	0.054081	1	8440	33.426	10.373	1	60080			20208	64	17050	17539	20208	20208		
VEFMDDTSR	9	Unmodified	_VEFMDDTSR_			0	0	0	P62857	P62857	P62857	RPS28	40S ribosomal protein S28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.239864	1098.46517	0.90989	0.00050066	1.1017	0.0006062	2.0116	0.0011069	550.240649251577	6.5427	0.50541	6.5427	6.4274	6.9328	0	657	46	0.884090832094921	0.0304884139621503	0.884090832094921	358.554924169501	0	12.3649862201868						1183	58	5	NaN	NaN	NaN	1.5716E-08	1	6656	133.68	125.5	1	1018400			20209	1406	17051	17540	20209	20209		
VEFMDDTSR	9	Oxidation (M)	_VEFM(Oxidation (M))DDTSR_	VEFM(1)DDTSR	VEFM(89)DDTSR	0	1	0	P62857	P62857	P62857	RPS28	40S ribosomal protein S28	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.237321	1114.46009	1.581	0.00088259	1.3117	0.00073224	2.8927	0.0016148	558.237884594348	4.0775	0.079845	4.0775	4.042	4.1219	0	657	34	0.884090832094921	0.0223612701402726	0.884090832094921	358.491160971846	0	9.06730100842248						191	10	3	NaN	NaN	NaN	0.013711	1	7098	88.921	85.781	1	63452			20210	1406	17051	17541	20210	20210	504	
VEFSISDK	8	Unmodified	_VEFSISDK_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.737283	923.460012	-1.2218	-0.00056539	0.19865	9.1923E-05	-1.0232	-0.00047347	462.737683508028	7.456	0.18619	7.456	7.394	7.5801	0	768	28	0.808687310729125	0.0183924424534009	0.808687310729125	328.742887594177	0	7.47678931253324						286	22	3	NaN	NaN	NaN	0.016799	1	2759	60.589	39.931	1	102130			20211	344	17052	17542	20211	20211		
VEGFPTIYFAPSGDK	15	Unmodified	_VEGFPTIYFAPSGDK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.403763	1626.79297	2.1914	0.0017847	0.015161	1.2347E-05	2.2066	0.001797	814.403725268686	15.154	0.30148	15.154	15.03	15.331	0	378	97	1.07192009927972	0.0642151572595406	1.07192009927972	432.977860723051	0	25.9382592367779						1401	35	4	NaN	NaN	NaN	1.4858E-06	1	22380	99.589	71.261	1	1020500			20212	680	17053	17543	20212	20212		
VEGTDVTGIEEVVIPK	16	Unmodified	_VEGTDVTGIEEVVIPK_			0	0	0	Q96EY7	Q96EY7	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.953817	1683.89308	2.1581	0.0018192	1.9706	0.0016611	4.1287	0.0034803	842.956247263613	14.24	0.21282	14.24	14.134	14.347	-1.7764E-15	294	64	1.12800004657306	0.0419876198535674	1.12800004657306	455.499600551107	0	16.9550915618273						829	25	4	NaN	NaN	NaN	0.00039757	1	24024	84.999	73.517	1	205550			20213	2522	17054	17544	20213	20213		
VEGTEPTTAFNLFVGNLNFNK	21	Unmodified	_VEGTEPTTAFNLFVGNLNFNK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1156.58151	2311.14846	-0.197	-0.00022785	0.53949	0.00062396	0.34248	0.00039611	1157.08375592605	19.224	0.17732	19.224	19.162	19.339	0	72	94	1.27517645957152	0.0614057649103075	1.27517645957152	513.788772723088	0	24.7413543079288						1508	21	5	NaN	NaN	NaN	7.7174E-38	1	35726	220.06	213.86	1	515760			20214	764	17055	17545	20214	20214		
VEGTEPTTAFNLFVGNLNFNK	21	Unmodified	_VEGTEPTTAFNLFVGNLNFNK_			0	0	0	P19338	P19338	P19338	NCL	Nucleolin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.390097	2311.14846	0.69501	0.00053612	0.21468	0.0001656	0.90969	0.00070172	771.724826154684	19.233	0.1596	19.233	19.179	19.339	0	474	46	1.00756305028564	0.0302361592844221	1.00756305028564	608.943058936547	0	18.2738929538245						882	19	6	NaN	NaN	NaN	2.089E-17	1	35727	214.78	204.02	1	635570			20215	764	17055	17545	20215	20215		
VEHIEWFR	8	Unmodified	_VEHIEWFR_			0	0	0	Q92665	Q92665	Q92665	MRPS31	28S ribosomal protein S31, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	372.525936	1114.55598	-1.605	-0.00059791	-1.5162	-0.00056482	-3.1212	-0.0011627	372.525379509043	9.0794	0.10642	9.0794	9.0351	9.1415	0	840	22	0.759569036796863	0.014351120667235	0.759569036796863	461.992414964648	0	8.72877720564344						164	13	3	NaN	NaN	NaN	0.033169	1	7113	46.835	37.442	1	41822			20216	2425	17056	17546	20216	20216		
VEHINLHPELDGQEYVVEFDFLGK	24	Unmodified	_VEHINLHPELDGQEYVVEFDFLGK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	707.603892	2826.38646	-0.15853	-0.00011218	0.48517	0.00034331	0.32664	0.00023113	707.854775584726	16.874	0.08879	16.874	16.839	16.927	0	492	28	0.995464410099171	0.0181567430371361	0.995464410099171	801.299195243244	0	14.6152724660906						159	11	3	NaN	NaN	NaN	0.017008	1	37946	31.381	30.355	1	41364			20217	651	17057	17547	20217	20217		
VEHINLHPELDGQEYVVEFDFLGK	24	Unmodified	_VEHINLHPELDGQEYVVEFDFLGK_			0	0	0	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	943.136097	2826.38646	0.4261	0.00040187	0.76998	0.0007262	1.1961	0.0011281	943.470950351324	16.865	0.062084	16.865	16.839	16.901	0	408	28	1.0518390438467	0.018084171566231	1.0518390438467	635.009579394858	0	10.9176610691118						144	8	4	NaN	NaN	NaN	0.024171	1	37947	31.381	30.355	1	25558			20218	651	17057	17547	20218	20218		
VEHLSEFLVDIK	12	Unmodified	_VEHLSEFLVDIK_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.929287	1427.76603	-2.1357	-0.0010186	-0.13046	-6.222E-05	-2.2661	-0.0010808	476.929078923739	13.283	0.14189	13.283	13.23	13.371	0	792	31	0.792332785124922	0.0204545420260502	0.792332785124922	480.628701533711	0	12.4077157464805						342	17	4	NaN	NaN	NaN	0.0036569	1	16324	59.645	56.974	1	126840			20219	1623	17058	17548	20219	20219		
VEHLSEFLVDIK	12	Unmodified	_VEHLSEFLVDIK_			0	0	0	Q13057	Q13057	Q13057	COASY	Bifunctional coenzyme A synthase;Phosphopantetheine adenylyltransferase;Dephospho-CoA kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.890292	1427.76603	1.6419	0.0011738	0.4534	0.00032413	2.0953	0.0014979	714.890537979172	13.283	0.16852	13.283	13.23	13.398	0	426	34	1.03977710643793	0.0221242386339204	1.03977710643793	420.488383606856	0	8.94709576130191						425	20	4	NaN	NaN	NaN	3.4769E-05	1	16326	110.52	95.759	1	152800			20220	1623	17058	17548	20220	20220		
VEHNQSYSQAGITETEWTSGSSK	23	Unmodified	_VEHNQSYSQAGITETEWTSGSSK_			0	0	0	P42167	P42167	P42167	TMPO	Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	842.71749	2525.13064	1.5309	0.0012901	1.4042	0.0011833	2.9351	0.0024734	843.052627870585	7.4472	0.062068	7.4472	7.4117	7.4738	0	510	34	0.983355730988811	0.0222099939443385	0.983355730988811	594.011930714872	0	13.4163059900774						166	8	4	NaN	NaN	NaN	6.7787E-07	1	36947	85.421	84.17	1	31617			20221	1043	17059	17549	20221	20221		
VEHSDLSFSK	10	Unmodified	_VEHSDLSFSK_			0	0	0	P61769	P61769	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	383.524261	1147.55095	-0.094699	-3.6319E-05	-0.61608	-0.00023628	-0.71078	-0.0002726	383.52408731936	4.2105	0.26601	4.2105	4.1573	4.4233	0	885	40	0.728786607772777	0.0267041596747721	0.728786607772777	443.114176150764	0	16.2365658038744						513	31	4	NaN	NaN	NaN	0.0047077	1	7991	90.761	34.383	1	278080			20222	1351	17060	17550	20222	20222		
VEHSDLSFSK	10	Unmodified	_VEHSDLSFSK_			0	0	0	P61769	P61769	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.782753	1147.55095	1.7253	0.00099169	1.5259	0.00087706	3.2512	0.0018688	574.783556399071	4.2105	0.23938	4.2105	4.1041	4.3435	0	621	40	0.908462957275599	0.0263793478580419	0.908462957275599	368.244048597306	0	10.692827678669						521	28	4	NaN	NaN	NaN	4.0453E-05	1	7992	132.39	62.675	1	304450			20223	1351	17060	17550	20223	20223		
VEHVVSVLEK	10	Unmodified	_VEHVVSVLEK_			0	0	0	Q9NYU2	Q9NYU2	Q9NYU2	UGGT1	UDP-glucose:glycoprotein glucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.826963	1137.63937	1.7778	0.0010131	-1.6898	-0.00096289	0.088049	5.0173E-05	569.826753629304	5.6026	0.11534	5.6026	5.5849	5.7002	0	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	374.85984385034	0	7.39631225034088						139	14	3	NaN	NaN	NaN	0.00055869	1	7743	90.263	59.67	1	32640			20224	3121	17061	17551	20224	20224		
VEIAGPGFINVHLR	14	Unmodified	_VEIAGPGFINVHLR_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.956059	1520.84635	-0.37403	-0.00018999	-0.84072	-0.00042705	-1.2147	-0.00061704	507.95560280876	13.034	0.14181	13.034	12.99	13.132	0	681	73	0.867820189810857	0.0488594177371753	0.867820189810857	526.110506870599	0	29.6207132916672						667	17	5	NaN	NaN	NaN	0.00054875	1	19168	99.855	87.898	1	326790			20225	1250	17062	17552	20225	20225		
VEIAGPGFINVHLR	14	Unmodified	_VEIAGPGFINVHLR_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.43045	1520.84635	1.9495	0.0014844	0.01114	8.4826E-06	1.9607	0.0014929	761.430096289955	13.034	0.15067	13.034	12.99	13.141	0	354	49	1.08796502040166	0.0320721644177464	1.08796502040166	439.717234629758	0	12.9624419736913						493	18	4	NaN	NaN	NaN	8.249E-17	1	19170	171.34	142.69	1	232800			20226	1250	17062	17552	20226	20226		
VEILANDQGNR	11	Unmodified	_VEILANDQGNR_			0	0	0	P17066;P48741	P17066	P17066	HSPA6;HSPA7	Heat shock 70 kDa protein 6;Putative heat shock 70 kDa protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.817658	1227.62076	2.5047	0.00154	-0.005661	-3.4805E-06	2.4991	0.0015365	614.817236952242	4.8844	0.5941	4.8844	4.778	5.3721	0	606	133	0.918606045818476	0.0891913688517694	0.918606045818476	372.067028226797	0	36.1255705895012						2142	68	5	NaN	NaN	NaN	6.043E-08	1	10232	127.94	0	1	5250200			20227	734	17063	17553	20227	20227		
VEILQHVIDYIR	12	Unmodified	_VEILQHVIDYIR_			0	0	0	P41134	P41134	P41134	ID1	DNA-binding protein inhibitor ID-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.952314	1496.83511	-1.0712	-0.00053553	-0.64116	-0.00032055	-1.7123	-0.00085608	499.952046065777	15.517	0.053204	15.517	15.491	15.544	0	735	22	0.831145085810763	0.0142793929475133	0.831145085810763	503.949256471007	0	8.65804247851275						75	7	2	NaN	NaN	NaN	0.00030661	1	18454	36.952	32.123	1	18993			20228	1028	17064	17554	20228	20228		
VEITPESILSALSK	14	Unmodified	_VEITPESILSALSK_			0	0	0	Q5VT52	Q5VT52	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.921789	1485.82903	0.51893	0.00038604	0.66173	0.00049227	1.1807	0.00087831	743.921901556519	19.579	0.10641	19.579	19.508	19.614	0	426	34	1.03977710643793	0.0221150800336967	1.03977710643793	420.330688104216	0	8.94003796629897						160	13	3	NaN	NaN	NaN	0.010958	1	18109	34.779	30.252	1	30679			20229	2007	17065	17555	20229	20229		
VELAQLQEEWNEHNAK	16	Unmodified	_VELAQLQEEWNEHNAK_			0	0	0	Q9H307	Q9H307	Q9H307	PNN	Pinin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.649911	1936.9279	1.0789	0.00069769	-0.28901	-0.00018689	0.78993	0.00051081	646.984053002875	11.19	0.18621	11.19	11.092	11.279	0	600	43	0.922661313351899	0.0283868792767229	0.922661313351899	558.273722043175	0	17.1760195444134						296	22	2	NaN	NaN	NaN	2.9404E-09	1	30453	162.23	128.5	1	221130			20230	2877	17066	17556	20230	20230		
VELDNMPLR	9	Unmodified	_VELDNMPLR_			0	0	0	Q15233	Q15233	Q15233	NONO	Non-POU domain-containing octamer-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.784241	1085.55393	0.76944	0.00041841	-0.32535	-0.00017692	0.4441	0.00024149	543.784367304346	9.6292	0.22166	9.6292	9.5494	9.7711	0	657	46	0.884090832094921	0.0304968767527163	0.884090832094921	358.60775950291	0	12.370240983286						651	26	4	NaN	NaN	NaN	1.1079E-08	1	6349	154.71	108.26	1	521020			20231	1824	17067	17557	20231	20231		
VELESRLEGLTDEINFLR	18	Unmodified	_VELESRLEGLTDEINFLR_			0	0	1	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.711059	2132.11135	-0.19631	-0.00013972	-0.88285	-0.00062833	-1.0792	-0.00076805	712.044650049481	17.92	0.09752	17.92	17.885	17.982	0	624	82	0.906433495720521	0.0548259126734941	0.906433495720521	548.097815713252	0	33.151867315915						592	12	4	NaN	NaN	NaN	4.0586E-10	1	33770	94.63	75.432	1	179200		+	20232	28	17068	17558	20232	20232		
VELESRLEGLTDEINFLR	18	Unmodified	_VELESRLEGLTDEINFLR_			0	0	1	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.711059	2132.11135	0.16781	0.00011943	-1.1517	-0.00081965	-0.98386	-0.00070022	712.376286113255	17.92	0.070919	17.92	17.885	17.956	0	495	22	0.993446994398923	0.0141219107113567	0.993446994398923	600.712717673673	0	8.53916858170851						151	9	3	NaN	NaN	NaN	0.0032859	1	33771	35.246	29.343	1	36391		+	20233	28	17068	17558	20233	20233		
VELHSTCQTISVDR	14	Unmodified	_VELHSTCQTISVDR_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.904136	1643.79372	2.1104	0.0017366	-4.3652	-0.0035921	-2.2548	-0.0018555	823.401023007869	5.8687	0.15958	5.8687	5.78	5.9396	0	375	40	1.07392668217569	0.0260855828537037	1.07392668217569	433.750507234947	0	10.5357609435596						429	19	5	NaN	NaN	NaN	0.028218	1	22857	31.801	29.499	1	89365			20234	69	17069	17559	20234	20234		
VELHSTCQTISVDR	14	Unmodified	_VELHSTCQTISVDR_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.938516	1643.79372	-1.6075	-0.00088243	1.2672	0.00069561	-0.34034	-0.00018683	548.939462163942	5.8687	0.097546	5.8687	5.8421	5.9396	0	780	34	0.800512323802183	0.0224859096742921	0.800512323802183	484.978404974541	0	13.6227516853752						264	12	4	NaN	NaN	NaN	3.5848E-06	1	22859	103.76	99.777	1	75327			20235	69	17069	17559	20235	20235		
VELLNQLEEEK	11	Unmodified	_VELLNQLEEEK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.356282	1342.69801	1.2804	0.00086087	0.35295	0.00023731	1.6333	0.0010982	672.85731439956	11.562	0.23949	11.562	11.465	11.704	0	468	43	1.01159370163332	0.0282067707809603	1.01159370163332	409.339525682791	0	11.4138177747441						682	28	5	NaN	NaN	NaN	0.0078704	1	13692	62.271	41.183	1	239970			20236	914	17070	17560	20236	20236		
VELNALMTDETISNVPILILGNK	23	Unmodified	_VELNALMTDETISNVPILILGNK_			0	0	0	Q9NR31	Q9NR31	Q9NR31	SAR1A	GTP-binding protein SAR1a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.124252	2496.35093	1.1467	0.00095538	-0.69285	-0.00057723	0.4539	0.00037815	833.457504920209	20.004	0.044358	20.004	19.986	20.031	0	387	22	1.06589869032374	0.0140518924123427	1.06589869032374	643.913972081592	0	8.48880849618695						100	6	5	NaN	NaN	NaN	0.017899	1	36810	56.08	56.046	1	33251			20237	3012	17071	17561	20237	20237		
VELQELNDR	9	Unmodified	_VELQELNDR_			0	0	0	P08670;P17661	P08670	P08670	VIM;DES	Vimentin;Desmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.288202	1114.56185	1.5185	0.00084778	0.030936	1.7271E-05	1.5495	0.00086505	558.288065529755	6.7111	0.39013	6.7111	6.587	6.9771	0	618	79	0.910492137470517	0.0527843383249464	0.910492137470517	369.196255201295	0	21.4035676321032						1495	45	5	NaN	NaN	NaN	3.3122E-06	1	7115	150.24	96.564	1	1957900			20238	588	17072	17562	20238	20238		
VELSDVQNPAISITENVLHFK	21	Unmodified	_VELSDVQNPAISITENVLHFK_			0	0	0	Q9P035	Q9P035	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.084785	2352.23253	0.70312	0.00055201	-0.55354	-0.00043457	0.14958	0.00011744	785.41860908396	18.825	0.23053	18.825	18.692	18.922	0	480	37	1.00353128488872	0.0241939396115666	1.00353128488872	606.443103368304	0	14.6206182524453						734	27	5	NaN	NaN	NaN	3.2167E-16	1	36067	136.39	120.29	1	255290			20239	3143	17073	17563	20239	20239		
VELSEQQLQLWPSDVDK	17	Unmodified	_VELSEQQLQLWPSDVDK_			0	0	0	P09543	P09543	P09543	CNP	2,3-cyclic-nucleotide 3-phosphodiesterase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.51002	2013.00549	1.6206	0.0016328	0.90769	0.0009145	2.5283	0.0025473	1007.5111434668	15.101	0.15962	15.101	15.03	15.189	0	168	67	1.21171599086077	0.0437428836446498	1.21171599086077	488.651530572548	0	17.640294595296						790	19	4	NaN	NaN	NaN	1.2366E-13	1	31855	101.43	85.9	1	223980			20240	605	17074	17564	20240	20240		
VELSQLR	7	Unmodified	_VELSQLR_			0	0	0	P42766	P42766	P42766	RPL35	60S ribosomal protein L35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.747985	843.481417	-1.7217	-0.00072785	0.75022	0.00031716	-0.97148	-0.00041069	422.748425957049	6.321	0.21285	6.321	6.2678	6.4806	0	795	37	0.790287188799094	0.0245488687614877	0.790287188799094	321.709083673383	0	9.99332165118017						363	25	3	NaN	NaN	NaN	0.013723	1	1469	58.687	5.0076	1	111040			20241	1057	17075	17565	20241	20241		
VELSTGMPR	9	Unmodified	_VELSTGMPR_			0	0	0	Q16629	Q16629	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.257859	988.501166	0.098214	4.8641E-05	4.8202	0.0023872	4.9184	0.0024359	495.258705785503	6.5604	0.27489	6.5604	6.4451	6.72	0	735	82	0.831145085810763	0.055062394349741	0.831145085810763	337.546201906705	0	22.3620429187932						889	32	4	NaN	NaN	NaN	0.0062155	1	4019	79.809	26.13	1	437300			20242	1894	17076	17566	20242	20242		
VELTITPDFQWDEK	14	Unmodified	_VELTITPDFQWDEK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	860.92506	1719.83557	2.1049	0.0018121	-0.24957	-0.00021486	1.8553	0.0015973	860.924473470782	15.987	0.15074	15.987	15.925	16.076	0	336	34	1.09998710857178	0.0220298733175506	1.09998710857178	444.11187569865	0	8.89440274728696						372	18	4	NaN	NaN	NaN	3.3457E-08	1	25054	92.707	83.445	1	128230			20243	350	17077	17567	20243	20243		
VELTPVAIQAGR	12	Unmodified	_VELTPVAIQAGR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.364244	1252.71394	1.4816	0.00092949	0.76816	0.00048192	2.2497	0.0014114	627.364926876782	9.9573	0.15064	9.9573	9.8776	10.028	0	555	58	0.953040030838688	0.0384264728149466	0.953040030838688	385.927985488185	0	15.5605753830071						560	18	4	NaN	NaN	NaN	2.6856E-07	1	11005	158.57	123.63	1	557650			20244	1914	17078	17568	20244	20244		
VEMGTSSQNDVDMSWIPQETLNQINK	26	Unmodified	_VEMGTSSQNDVDMSWIPQETLNQINK_			0	0	0	P43307	P43307	P43307	SSR1	Translocon-associated protein subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	988.795305	2963.36409	1.1806	0.0011674	1.6835	0.0016646	2.8641	0.002832	989.465260892857	16.59	0.088657	16.59	16.528	16.617	0	408	52	1.0518390438467	0.0341542869756604	1.0518390438467	634.865825117137	0	20.6147411136131						381	11	4	NaN	NaN	NaN	1.7233E-06	1	38161	89.489	89.165	1	64902			20245	1065	17079	17569	20245	20245		
VEMLETER	8	Unmodified	_VEMLETER_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.747324	1005.4801	0.25138	0.00012663	3.0914	0.0015573	3.3428	0.0016839	503.748662917851	5.3455	0.12411	5.3455	5.3189	5.443	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	354.837317402524	0	8.25906212807172						216	15	3	NaN	NaN	NaN	0.014287	1	4398	67.903	31.333	1	62943			20246	1782	17080	17570	20246	20246		
VEMQPTELVSK	11	Unmodified	_VEMQPTELVSK_			0	0	0	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.828846	1259.64314	1.5587	0.00098328	-2.0935	-0.0013206	-0.53478	-0.00033735	630.827054262098	8.3608	0.1508	8.3608	8.2987	8.4495	0	546	64	0.959108205975751	0.0424948927887633	0.959108205975751	388.361977211026	0	17.2070267796582						465	18	4	NaN	NaN	NaN	0.00057162	1	11201	62.271	47.509	1	159600			20247	206	17081	17571	20247	20247		
VENLQAVQTDFSSDPLQK	18	Unmodified	_VENLQAVQTDFSSDPLQK_			0	0	0	Q9HCU5	Q9HCU5	Q9HCU5	PREB	Prolactin regulatory element-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1010.0051	2017.99565	1.7605	0.0017781	-1.4527	-0.0014673	0.3078	0.00031088	1010.50407313899	12.706	0.12415	12.706	12.635	12.76	0	213	28	1.18187287897418	0.0179230835476791	1.18187287897418	476.608564770657	0	7.22776135902052						168	15	3	NaN	NaN	NaN	1.7485E-10	1	31956	97.268	92.187	1	24888			20248	2967	17082	17572	20248	20248		
VENMVDQLLR	10	Unmodified	_VENMVDQLLR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.821355	1215.62816	0.95217	0.0005797	-1.3978	-0.00085098	-0.44558	-0.00027128	608.820925082389	13.62	0.15961	13.62	13.567	13.726	0	582	49	0.934820374997243	0.0324106998985512	0.934820374997243	378.675925314659	0	13.1288877547365						608	19	4	NaN	NaN	NaN	1.7796E-06	1	9898	123.5	84.179	1	432740			20249	1036	17083	17573	20249	20249		
VENQENVSNLVIEDTELK	18	Unmodified	_VENQENVSNLVIEDTELK_			0	0	0	Q01518	Q01518	Q01518	CAP1	Adenylyl cyclase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.02095	2072.02734	1.8458	0.0019141	-0.058115	-6.0266E-05	1.7877	0.0018539	1037.52266152228	13.238	0.15962	13.238	13.194	13.354	0	174	67	1.20774045859593	0.0437308796161957	1.20774045859593	486.953279580022	0	17.6320128190309						948	19	5	NaN	NaN	NaN	2.8295E-14	1	32896	119.58	112.72	1	411700			20250	1516	17084	17574	20250	20250		
VEPAVDTSR	9	Unmodified	_VEPAVDTSR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.251089	972.487624	1.2158	0.0005924	8.7187	0.0042482	9.9345	0.0048406	487.255206132811	3.0488	0.24828	3.0488	2.9336	3.1818	0	714	46	0.845418525735192	0.03057744930274	0.845418525735192	343.420518376419	0	12.4209763218092						323	29	2	NaN	NaN	NaN	0.060304	1	3684	42.075	22.587	1	110060			20251	326	17085	17575	20251	20251		
VEPAVIEAQNAVK	13	Unmodified	_VEPAVIEAQNAVK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.380091	1366.74563	1.7972	0.00123	0.56985	0.00039	2.367	0.00162	684.38032457751	8.0414	0.19521	8.0414	7.9615	8.1567	0	483	43	1.00151498427745	0.0282301658273657	1.00151498427745	405.188534577131	0	11.4212365286897						422	23	4	NaN	NaN	NaN	0.015326	1	14409	50.09	43.826	1	120820			20252	1737	17086	17576	20252	20252		
VEPAVIEAQNAVK	13	Unmodified	_VEPAVIEAQNAVK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.380091	1366.74563	2.1587	0.0014774	0.21258	0.00014549	2.3713	0.0016229	684.380055395387	8.0414	0.15976	8.0414	7.9793	8.139	0	429	49	1.03776581230406	0.0321918235731047	1.03776581230406	419.854736902992	0	13.0240266700492						493	19	4	NaN	NaN	NaN	0.00035226	1	14410	57.293	53.047	1	148560			20253	1737	17086	17576	20253	20253		
VEPAVSSVVNSIQVLTSK	18	Unmodified	_VEPAVSSVVNSIQVLTSK_			0	0	0	Q9P2E9	Q9P2E9	Q9P2E9	RRBP1	Ribosome-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.020023	1856.02549	1.492	0.0013861	-0.10383	-9.6457E-05	1.3882	0.0012896	929.521482385139	17.814	0.24825	17.814	17.646	17.894	0	225	43	1.17390432875292	0.0279052631275762	1.17390432875292	473.677265823704	0	11.2599369613052						653	29	4	NaN	NaN	NaN	1.2296E-06	1	28615	118.26	114.28	1	185960			20254	3158	17087	17577	20254	20254		
VEPFLPGHYEVLDLK	15	Unmodified	_VEPFLPGHYEVLDLK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.982051	1754.92432	-0.49269	-0.00028871	-0.91875	-0.00053837	-1.4114	-0.00082708	586.315897163087	14.506	0.133	14.506	14.444	14.577	0	726	28	0.837263974740672	0.0183515663260597	0.837263974740672	506.975610458156	0	11.112142432617						348	16	4	NaN	NaN	NaN	0.00054401	1	26031	30.875	19.519	1	112050			20255	581	17088	17578	20255	20255		
VEPFLPGHYEVLDLK	15	Unmodified	_VEPFLPGHYEVLDLK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	585.982051	1754.92432	0.77209	0.00045243	3.5835	0.0020999	4.3556	0.0025523	585.982011250412	14.498	0.133	14.498	14.462	14.595	0	594	34	0.926715457081489	0.0222962488144068	0.926715457081489	561.139774503227	0	13.5007050291209						231	16	5	NaN	NaN	NaN	0.067085	1	26036	19.89	17.754	1	54573			20256	581	17088	17578	20256	20256		
VEPFLPGHYEVLDLK	15	Unmodified	_VEPFLPGHYEVLDLK_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.469438	1754.92432	2.5014	0.0021974	6.4756	0.0056886	8.977	0.0078861	878.977653008431	14.506	0.15073	14.506	14.453	14.604	0	270	49	1.14398322290989	0.0319575665348772	1.14398322290989	461.801123948131	0	12.9005739322944						449	18	4	NaN	NaN	NaN	0.063499	1	26037	40.224	33.084	1	103030			20257	581	17088	17578	20257	20257		
VEPGLGADNSVVR	13	Unmodified	_VEPGLGADNSVVR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.846416	1311.67828	1.9134	0.0012568	-3.1354	-0.0020595	-1.222	-0.00080269	656.845549072353	6.8264	0.29261	6.8264	6.7466	7.0392	0	534	61	0.967195187796614	0.0404125540648674	0.967195187796614	391.46804664111	0	16.3568055333197						1240	34	5	NaN	NaN	NaN	0.0014449	1	12711	73.655	61.059	1	528690			20258	792	17089	17579	20258	20258		
VEPHATIAEIK	11	Unmodified	_VEPHATIAEIK_			0	0	0	Q9NZ01	Q9NZ01	Q9NZ01	TECR	Very-long-chain enoyl-CoA reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.337695	1206.66084	1.2658	0.00076494	0.816	0.00049314	2.0818	0.0012581	604.33820155759	5.2745	0.26607	5.2745	5.2036	5.4697	0	558	43	0.951016745717027	0.0283279591633129	0.951016745717027	385.268858901582	0	11.4760129629806						553	31	2	NaN	NaN	NaN	0.0023625	1	9657	81.335	50.743	1	278780			20259	3124	17090	17580	20259	20259		
VEPLDFGGTQK	11	Unmodified	_VEPLDFGGTQK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.806228	1189.5979	0.92521	0.00055125	-2.4537	-0.0014619	-1.5285	-0.00091068	595.80531823362	8.6712	0.20415	8.6712	8.5825	8.7866	0	606	46	0.918606045818476	0.0304208382695857	0.918606045818476	372.199238329941	0	12.325863611326						497	24	4	NaN	NaN	NaN	0.00029382	1	9148	90.263	65.009	1	132820			20260	562	17091	17581	20260	20260		
VEQDLAMGTDAEGEK	15	Unmodified	_VEQDLAMGTDAEGEK_			0	0	0	P61764	P61764	P61764	STXBP1	Syntaxin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.85906	1591.70357	2.6444	0.0021072	-0.05339	-4.2545E-05	2.591	0.0020647	796.858979385645	6.0195	0.12415	6.0195	5.9751	6.0993	0	399	31	1.0578662689527	0.020089366798685	1.0578662689527	427.380662026824	0	8.11615525904023						279	15	4	NaN	NaN	NaN	8.9397E-05	1	21312	91.993	85.73	1	59762			20261	1350	17092	17582	20261	20261		
VEQIAAIAQELNELDYYDSHNVNTR	25	Unmodified	_VEQIAAIAQELNELDYYDSHNVNTR_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	969.136936	2904.38898	1.8692	0.0018115	0.41691	0.00040405	2.2861	0.0022155	969.471597662131	17.53	0.10643	17.53	17.486	17.592	0	267	133	1.14597988355104	0.0879560583406376	1.14597988355104	691.752698395907	0	53.0932886089305						907	13	5	NaN	NaN	NaN	1.4925E-13	1	38082	101.62	92.116	1	172400			20262	221	17093	17583	20262	20262		
VEQIEAGTPGR	11	Unmodified	_VEQIEAGTPGR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.801477	1155.5884	1.7114	0.00099057	-1.1859	-0.0006864	0.52553	0.00030418	578.801251971822	4.0775	0.44337	4.0775	3.9622	4.4056	0	663	94	0.880024865079826	0.0629570189246805	0.880024865079826	356.687262687345	0	25.5174230164084						1413	51	4	NaN	NaN	NaN	2.0409E-11	1	8216	183.13	154.03	1	633540			20263	1914	17094	17584	20263	20263		
VEQLGAEGNVEESQK	15	Unmodified	_VEQLGAEGNVEESQK_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.891748	1615.76894	3.6423	0.0029462	-3.4047	-0.002754	0.23764	0.00019222	808.888662825679	4.7691	0.2926	4.7691	4.7337	5.0263	0	396	142	1.05987478976334	0.0943746889370616	1.05987478976334	428.13710490046	0	38.1227164639108						1656	34	5	NaN	NaN	NaN	3.4557E-33	1	22068	258	235.11	1	570480			20264	3372	17095	17585	20264	20264		
VEQVLSLEPQHELK	14	Unmodified	_VEQVLSLEPQHELK_			0	0	0	O95292	O95292	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.301672	1647.88319	0.49522	0.00027252	0.9787	0.00053858	1.4739	0.0008111	550.301124173259	9.2036	0.24834	9.2036	9.0883	9.3366	0	648	37	0.890187667287968	0.0243755060720344	0.890187667287968	539.295697889585	0	14.7672294748576						472	29	4	NaN	NaN	NaN	0.040215	1	22979	35.845	29.099	1	160680			20265	415	17096	17586	20265	20265		
VEQVLSLEPQHELK	14	Unmodified	_VEQVLSLEPQHELK_			0	0	0	O95292	O95292	O95292	VAPB	Vesicle-associated membrane protein-associated protein B/C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.948869	1647.88319	2.443	0.0020153	-0.6234	-0.00051427	1.8196	0.0015011	825.449752406547	9.1947	0.097555	9.1947	9.1592	9.2568	0	327	64	1.10599442759226	0.0420107430674173	1.10599442759226	446.693137117939	0	16.9674549394372						286	12	3	NaN	NaN	NaN	0.0002508	1	22980	79.795	63.508	1	57880			20266	415	17096	17586	20266	20266		
VESEQQYFEIEK	12	Unmodified	_VESEQQYFEIEK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.861928	1527.7093	1.6896	0.0012923	2.0781	0.0015895	3.7678	0.0028818	764.863464736428	9.2745	0.18626	9.2745	9.2036	9.3898	0	435	58	1.03374239103424	0.0382357127621848	1.03374239103424	417.785416007374	0	15.452905193049						658	22	4	NaN	NaN	NaN	4.7386E-11	1	19345	171.09	132.08	1	232830			20267	667	17097	17587	20267	20267		
VESHFDLELR	10	Unmodified	_VESHFDLELR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	415.547177	1243.6197	-1.8362	-0.00076304	-0.93551	-0.00038875	-2.7717	-0.0011518	415.881229805507	9.1238	0.10642	9.1238	9.0883	9.1947	0	846	40	0.755468431110051	0.026644658335389	0.755468431110051	458.916294739013	0	16.1855444573599						171	13	3	NaN	NaN	NaN	0.020319	1	10731	30.918	23.768	1	29719			20268	2064	17098	17588	20268	20268		
VESLEQEAANER	12	Unmodified	_VESLEQEAANER_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.82842	1373.64229	1.9854	0.0013656	-1.4231	-0.00097882	0.56235	0.0003868	687.827079368426	5.7268	0.22168	5.7268	5.6913	5.913	0	522	43	0.975277694896658	0.028284867590345	0.975277694896658	394.553738050529	0	11.4427924440715						270	26	4	NaN	NaN	NaN	3.1499E-07	1	14609	85.821	74.849	1	89115			20269	523	17099	17589	20269	20269		
VESLESLYFTPIPAR	15	Unmodified	_VESLESLYFTPIPAR_			0	0	0	Q14980	Q14980	Q14980	NUMA1	Nuclear mitotic apparatus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	861.45907	1720.90359	2.1423	0.0018455	-2.6787	-0.0023076	-0.53644	-0.00046212	861.456427878752	16.049	0.12413	16.049	15.996	16.12	0	369	85	1.07793901817685	0.0561108579748777	1.07793901817685	435.207966927748	0	22.6542429673993						685	15	4	NaN	NaN	NaN	1.5709E-17	1	25087	143.22	126.93	1	212280			20270	1782	17100	17590	20270	20270		
VESLQEEIAFLK	12	Unmodified	_VESLQEEIAFLK_			0	0	0	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.3823	1404.75005	1.2329	0.00086721	-0.15221	-0.00010706	1.0807	0.00076014	703.38230427445	15.287	0.24824	15.287	15.189	15.437	0	453	55	1.02166545906632	0.0362558355413685	1.02166545906632	413.228935463421	0	14.6642525614876						768	29	5	NaN	NaN	NaN	1.3851E-11	1	15618	195.4	102.97	1	462020			20271	588	17101	17591	20271	20271		
VESLSQVEVILQHSAADIAR	20	Unmodified	_VESLSQVEVILQHSAADIAR_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.390208	2164.1488	-0.69749	-0.00050386	-0.77738	-0.00056158	-1.4749	-0.0010654	722.724073117429	17.406	0.070921	17.406	17.371	17.442	0	651	34	0.888155670855968	0.0223457630982734	0.888155670855968	536.99425880764	0	13.5106343248181						178	9	3	NaN	NaN	NaN	0.00066518	1	34243	41.284	35.668	1	37140			20272	570	17102	17592	20272	20272		
VESLWPIFR	9	Unmodified	_VESLWPIFR_			0	0	0	P41223	P41223	P41223	BUD31	Protein BUD31 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.818941	1145.62333	-0.90322	-0.00051828	-1.3907	-0.000798	-2.2939	-0.0013163	573.818339002128	16.972	0.25715	16.972	16.901	17.158	0	639	52	0.896281965493857	0.0345152137235557	0.896281965493857	363.313773361998	0	13.9909682656521						598	30	3	NaN	NaN	NaN	0.0013514	1	7950	72.492	56.035	1	144790			20273	1031	17103	17593	20273	20273		
VESPGTYQQDPWAMTDEEK	19	Unmodified	_VESPGTYQQDPWAMTDEEK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.656403	2209.94738	1.0779	0.00079513	1.1374	0.00083902	2.2153	0.0016341	737.991137891173	10.826	0.079801	10.826	10.782	10.862	1.7764E-15	552	40	0.955063035883597	0.0262990708755764	0.955063035883597	577.37134281206	0	15.8987724324321						225	10	3	NaN	NaN	NaN	9.2423E-06	1	34783	91.993	91.05	1	50979			20274	57	17104	17594	20274	20274		
VESPGTYQQDPWAMTDEEK	19	Unmodified	_VESPGTYQQDPWAMTDEEK_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.98097	2209.94738	1.8297	0.0020236	0.6392	0.00070695	2.4689	0.0027306	1106.48508921988	10.826	0.097544	10.826	10.764	10.862	0	102	88	1.25537494996371	0.0575307487530137	1.25537494996371	505.948863131033	0	23.1863929796478						445	12	4	NaN	NaN	NaN	2.1955E-07	1	34784	104.86	97.208	1	71543			20275	57	17104	17594	20275	20275		
VESTDVSDLLHQYR	14	Unmodified	_VESTDVSDLLHQYR_			0	0	0	P28062	P28062	P28062	PSMB8	Proteasome subunit beta type-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.609164	1660.80566	0.17089	9.4776E-05	-1.1795	-0.00065415	-1.0086	-0.00055938	554.608458060089	11.243	0.1419	11.243	11.199	11.341	0	669	37	0.875957769340875	0.0244059657771015	0.875957769340875	530.640529005145	0	14.784724839632						378	17	4	NaN	NaN	NaN	7.0177E-06	1	23362	90.306	84.608	1	182600			20276	871	17105	17595	20276	20276		
VESTGAVPEFK	11	Unmodified	_VESTGAVPEFK_			0	0	0	Q6YN16	Q6YN16	Q6YN16	HSDL2	Hydroxysteroid dehydrogenase-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.300778	1162.587	1.3437	0.00078245	0.5013	0.00029191	1.845	0.0010744	582.301088420657	6.8885	0.16844	6.8885	6.7998	6.9683	0	567	31	0.944945209309785	0.020242660886354	0.944945209309785	382.97325129577	0	8.20407107009646						251	20	2	NaN	NaN	NaN	1.1901E-05	1	8413	97.277	57.953	1	75844			20277	2097	17106	17596	20277	20277		
VESVFETLVEDSAEEESTLTK	21	Unmodified	_VESVFETLVEDSAEEESTLTK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1171.5603	2341.10605	0.5458	0.00063944	0.24632	0.00028858	0.79212	0.00092802	1172.06166060408	19.552	0.053202	19.552	19.525	19.579	0	69	43	1.27715511956461	0.0277069358040583	1.27715511956461	514.546644032467	0	11.1627089113977						249	7	4	NaN	NaN	NaN	1.1973E-08	1	35972	94.63	83.421	1	51351			20278	3410	17107	17597	20278	20278		
VESVFETLVEDSAEEESTLTK	21	Unmodified	_VESVFETLVEDSAEEESTLTK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	781.375959	2341.10605	0.035976	2.8111E-05	0.94226	0.00073626	0.97824	0.00076437	781.375940846805	19.552	0.035484	19.552	19.534	19.57	0	495	19	0.993446994398923	0.0121036580872126	0.993446994398923	600.365816413492	0	7.31455488827135						76	5	4	NaN	NaN	NaN	0.04042	1	35973	22.456	21.44	1	10315			20279	3410	17107	17597	20279	20279		
VESVTAGSPLTNQFYLAAPR	20	Unmodified	_VESVTAGSPLTNQFYLAAPR_			0	0	0	Q6NUM9	Q6NUM9	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.05239	2120.09022	0.38671	0.00041032	-0.047497	-5.0397E-05	0.33921	0.00035992	1061.55319791551	14.728	0.07096	14.728	14.693	14.764	0	144	46	1.22760721615852	0.0297899231761882	1.22760721615852	494.888726545233	0	12.0092949524015						200	9	3	NaN	NaN	NaN	0.00022683	1	33623	80.815	75.199	1	35575			20280	2046	17108	17598	20280	20280		
VETDHIVAAVGLEPNVELAK	20	Unmodified	_VETDHIVAAVGLEPNVELAK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1052.56787	2103.12118	1.5553	0.0016371	-0.62456	-0.00065739	0.93079	0.00097971	1053.06768921927	13.079	0.053198	13.079	13.043	13.096	0	120	31	1.2434810169581	0.0198340933392591	1.2434810169581	501.31430056383	0	7.9961933427918						140	7	3	NaN	NaN	NaN	0.00078129	1	33367	30.959	29.688	1	27339			20281	458	17109	17599	20281	20281		
VETDHIVAAVGLEPNVELAK	20	Unmodified	_VETDHIVAAVGLEPNVELAK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.047671	2103.12118	0.93888	0.00065914	0.8681	0.00060945	1.807	0.0012686	702.382227416495	13.07	0.079813	13.07	13.043	13.123	0	438	49	1.03173026378327	0.0322140561522897	1.03173026378327	623.917252281278	0	19.4807752616176						261	10	4	NaN	NaN	NaN	0.037629	1	33368	36.96	36.595	1	51211			20282	458	17109	17599	20282	20282		
VETELQGVCDTVLGLLDSHLIK	22	Unmodified	_VETELQGVCDTVLGLLDSHLIK_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.764835	2438.27268	1.776	0.0014453	-0.10703	-8.7096E-05	1.669	0.0013582	814.099275137393	20.066	0.12413	20.066	20.031	20.155	0	357	49	1.08596037261705	0.0320810051607971	1.08596037261705	656.119806108314	0	19.3828277869259						267	15	5	NaN	NaN	NaN	6.3839E-38	1	36521	269.09	217.26	1	275990			20283	933	17110	17600	20283	20283		
VETFSGVYK	9	Unmodified	_VETFSGVYK_			0	0	0	P62081	P62081	P62081	RPS7	40S ribosomal protein S7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.266207	1028.51786	0.69066	0.00035588	-1.2794	-0.00065922	-0.58872	-0.00030335	515.265412781419	6.7377	0.40787	6.7377	6.5338	6.9417	0	717	118	0.84338031290707	0.0794462833591315	0.84338031290707	342.332271515389	0	32.247642290867						1442	47	4	NaN	NaN	NaN	0.0010128	1	4950	94.806	54.603	1	1183100			20284	1364	17111	17601	20284	20284		
VETGVLK	7	Unmodified	_VETGVLK_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	373.226354	744.438155	0.12286	4.5854E-05	1.2105	0.00045181	1.3334	0.00049766	373.226906424417	3.6519	0.3635	3.6519	3.5987	3.9622	0	846	49	0.755468431110051	0.0328094277710715	0.755468431110051	308.188724412181	0	13.3844053266432						911	42	4	NaN	NaN	NaN	0.020595	1	579	58.687	35.378	1	706550			20285	1446	17112	17602	20285	20285		
VETPLEEAIK	10	Unmodified	_VETPLEEAIK_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.810979	1127.6074	0.67647	0.00038208	-0.73401	-0.00041457	-0.057539	-3.2498E-05	564.810221765382	9.9307	0.14187	9.9307	9.8509	9.9928	0	618	34	0.910492137470517	0.0223178910428838	0.910492137470517	369.14407871166	0	9.0484222639202						140	17	2	NaN	NaN	NaN	0.047284	1	7463	30.918	9.6433	1	63923			20286	2785	17113	17603	20286	20286		
VETPSHPGGVSEEFWER	17	Unmodified	_VETPSHPGGVSEEFWER_			0	0	0	Q92620	Q92620	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.302512	1941.88571	-0.51203	-0.00033195	0.68379	0.0004433	0.17176	0.00011135	648.636979121717	9.4519	0.1064	9.4519	9.4076	9.514	0	708	31	0.849494101904619	0.0203750522723063	0.849494101904619	513.993184265706	0	12.3280879449811						237	13	4	NaN	NaN	NaN	0.0011244	1	30540	54.309	48.61	1	61370			20287	2421	17114	17604	20287	20287		
VETSDEEIHDLHQR	14	Unmodified	_VETSDEEIHDLHQR_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.400272	1706.78599	3.6581	0.0031255	-2.7581	-0.0023565	0.9	0.00076896	854.397473410928	3.9534	0.05323	3.9534	3.9268	3.98	0	297	31	1.12600091227925	0.0199954725049127	1.12600091227925	454.642559480108	0	8.07352169834934						95	7	3	NaN	NaN	NaN	6.3161E-08	1	24671	121.96	103.87	1	15454			20288	551	17115	17605	20288	20288		
VETSDEEIHDLHQR	14	Unmodified	_VETSDEEIHDLHQR_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	427.703774	1706.78599	0.314	0.0001343	1.674	0.00071597	1.988	0.00085027	427.705031497085	3.9534	0.11529	3.9534	3.9002	4.0154	0	822	22	0.771863999559055	0.0143391285682861	0.771863999559055	623.301234410659	0	11.5792374590494						176	14	4	NaN	NaN	NaN	0.0020958	1	24672	39.293	31.292	1	68760			20289	551	17115	17605	20289	20289		
VETSDEEIHDLHQR	14	Unmodified	_VETSDEEIHDLHQR_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.93594	1706.78599	1.8118	0.0010326	0.91539	0.00052172	2.7272	0.0015543	569.936301355475	3.9445	0.088658	3.9445	3.9179	4.0066	0	696	37	0.857641857947968	0.0244364826116721	0.857641857947968	519.429364267192	0	14.7999150347873						273	11	4	NaN	NaN	NaN	1.6674E-06	1	24673	112.93	100.97	1	74687			20290	551	17115	17605	20290	20290		
VETTEDLVAK	10	Unmodified	_VETTEDLVAK_			0	0	0	P38117	P38117	P38117	ETFB	Electron transfer flavoprotein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	552.792786	1103.57102	0.83963	0.00046414	-2.7978	-0.0015466	-1.9581	-0.0010824	552.792429429503	5.3721	0.24829	5.3721	5.2568	5.5051	0	654	88	0.886123392477847	0.0588952672706323	0.886123392477847	359.358673203974	0	23.8843994911205						819	29	4	NaN	NaN	NaN	0.00051154	1	6812	93.467	32.759	1	469820			20291	1003	17116	17606	20291	20291		
VETYLNENLR	10	Unmodified	_VETYLNENLR_			0	0	0	Q9UQE7	Q9UQE7	Q9UQE7	SMC3	Structural maintenance of chromosomes protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.822409	1249.63027	1.4955	0.00093593	-2.2706	-0.001421	-0.77513	-0.00048509	625.821523434314	7.935	0.16849	7.935	7.8374	8.0059	0	552	49	0.955063035883597	0.0323479365760566	0.955063035883597	386.757606507249	0	13.099460512603						262	20	4	NaN	NaN	NaN	4.7799E-05	1	10913	108.3	81.847	1	97396			20292	3321	17117	17607	20292	20292		
VETYNDESR	9	Unmodified	_VETYNDESR_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.746367	1111.47818	1.7014	0.00094725	-0.18206	-0.00010136	1.5193	0.00084589	556.745915692412	2.3306	0.14186	2.3306	2.3128	2.4547	0	672	19	0.873923798053065	0.0122046752689691	0.873923798053065	354.380137302563	0	4.94905220247563						136	17	2	NaN	NaN	NaN	0.00038191	1	7019	93.467	84.074	1	27226			20293	865	17118	17608	20293	20293		
VEVERDNLAEDIMR	14	Unmodified	_VEVERDNLAEDIMR_			0	0	1	P08670	P08670	P08670	VIM	Vimentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.613921	1687.81993	-0.2557	-0.00014411	-0.91294	-0.00051454	-1.1686	-0.00065866	563.613470518106	10.152	0.19506	10.152	10.099	10.294	0	762	127	0.812773098473386	0.0856229660869932	0.812773098473386	492.299183581722	0	51.862095804654						1112	23	6	NaN	NaN	NaN	1.3786E-07	1	24135	190.68	151.64	1	719470			20294	588	17119	17609	20294	20294		
VEVGLSSCQGDYIR	14	Unmodified	_VEVGLSSCQGDYIR_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.88013	1581.74571	1.4632	0.0011587	-3.1867	-0.0025235	-1.7235	-0.0013648	791.87754626806	9.3455	0.15964	9.3455	9.2656	9.4253	0	396	43	1.05987478976334	0.028121237288756	1.05987478976334	428.215373202594	0	11.3616686016395						274	19	2	NaN	NaN	NaN	0.00020515	1	21019	90.689	78.732	1	88923			20295	248	17120	17610	20295	20295		
VEVNTNSGEIIHK	13	Unmodified	_VEVNTNSGEIIHK_			0	0	0	Q8WWQ0	Q8WWQ0	Q8WWQ0	PHIP	PH-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	480.587812	1438.74161	-0.95728	-0.00046006	1.0511	0.00050515	0.093824	4.509E-05	480.588426009971	5.2125	0.097568	5.2125	5.1947	5.2923	0	816	22	0.775960037304758	0.0143331381547551	0.775960037304758	470.662589269481	0	8.69383936279274						143	12	3	NaN	NaN	NaN	9.0007E-05	1	16639	85.622	79.359	1	44825			20296	2392	17121	17611	20296	20296		
VEVPQPLSWYPEELAWHTNLSR	22	Unmodified	_VEVPQPLSWYPEELAWHTNLSR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	884.446605	2650.31799	1.6602	0.0014683	0.80899	0.00071551	2.4692	0.0021838	884.781478420094	17.885	0.14185	17.885	17.805	17.947	0	363	76	1.08195024817156	0.0501853643990366	1.08195024817156	653.400554904804	0	30.3074425111931						689	17	4	NaN	NaN	NaN	0.00035051	1	37438	39.48	37.295	1	131980			20297	1581	17122	17612	20297	20297		
VEVQLPELFHK	11	Unmodified	_VEVQLPELFHK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	446.918722	1337.73434	-2.0029	-0.00089513	-0.91646	-0.00040958	-2.9194	-0.0013047	446.918223839438	13.398	0.21287	13.398	13.283	13.496	0	801	25	0.78619514174348	0.0163704683781356	0.78619514174348	477.212995331244	0	9.93671905982666						367	25	3	NaN	NaN	NaN	0.070778	1	13536	8.9771	2.7138	1	103280			20298	1651	17123	17613	20298	20298		
VEVQLPELFHK	11	Unmodified	_VEVQLPELFHK_			0	0	0	Q13303	Q13303	Q13303	KCNAB2	Voltage-gated potassium channel subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.874445	1337.73434	0.927	0.00062097	-1.6364	-0.0010962	-0.70942	-0.00047522	669.87403658308	13.425	0.15966	13.425	13.318	13.478	0	474	34	1.00756305028564	0.0221731807232346	1.00756305028564	407.723950861367	0	8.97267604749635						273	19	3	NaN	NaN	NaN	0.007668	1	13537	51.872	47.044	1	59257			20299	1651	17123	17613	20299	20299		
VEVTEFEDIK	10	Unmodified	_VEVTEFEDIK_			0	0	0	Q01105;P0DME0	Q01105	Q01105	SET;SETSIP	Protein SET;Protein SETSIP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.805894	1207.59723	1.6526	0.00099949	2.2348	0.0013516	3.8874	0.0023511	604.806692672228	10.454	0.26603	10.454	10.312	10.578	0	567	58	0.944945209309785	0.0384530801307934	0.944945209309785	382.805840507431	0	15.5776901290604						970	31	4	NaN	NaN	NaN	0.00021394	1	9672	83.623	55.887	1	1446200			20300	1513	17124	17614	20300	20300		
VEWSAFLEAADNLR	14	Unmodified	_VEWSAFLEAADNLR_			0	0	0	Q9UI30	Q9UI30	Q9UI30	TRMT112	Multifunctional methyltransferase subunit TRM112-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.904462	1619.79437	1.913	0.0015512	3.0696	0.0024892	4.9826	0.0040404	811.409020411652	18.497	0.17739	18.497	18.461	18.639	-3.5527E-15	354	91	1.08796502040166	0.0601270686031004	1.08796502040166	439.474863827157	0	24.287853737171						599	21	4	NaN	NaN	NaN	1.1399E-07	1	22181	119.55	106.97	1	122040			20301	3234	17125	17615	20301	20301		
VEYHAGGSTQNSIK	14	Unmodified	_VEYHAGGSTQNSIK_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.579317	1489.71612	-0.74939	-0.00037288	1.9002	0.00094552	1.1509	0.00057264	497.580408425743	2.8627	0.12413	2.8627	2.8449	2.969	0	804	31	0.78414869089473	0.0204687855658668	0.78414869089473	475.474648069045	0	12.4114070792191						197	15	3	NaN	NaN	NaN	0.024532	1	18211	60	55.797	1	44920			20302	1272	17126	17616	20302	20302		
VEYHAGGSTQNSIK	14	Unmodified	_VEYHAGGSTQNSIK_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.865337	1489.71612	1.7737	0.0013229	-0.37891	-0.00028262	1.3948	0.0010403	745.865276471015	2.8627	0.070949	2.8627	2.8449	2.9158	0	492	28	0.995464410099171	0.0181542333061034	0.995464410099171	402.407561346572	0	7.33868602303733						103	9	3	NaN	NaN	NaN	0.0058935	1	18212	41.317	38.646	1	18442			20303	1272	17126	17616	20303	20303		
VEYHFLSPYVSPK	13	Unmodified	_VEYHFLSPYVSPK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.604803	1564.79258	0.80998	0.0004233	-0.74733	-0.00039056	0.062656	3.2745E-05	522.604340154188	10.897	0.29264	10.897	10.817	11.11	0	699	82	0.85560534332665	0.0550012205584762	0.85560534332665	518.574088696489	0	33.3357055922655						1267	34	5	NaN	NaN	NaN	1.6406E-05	1	20493	134.2	119.74	1	767480			20304	495	17127	17617	20304	20304		
VEYHFLSPYVSPK	13	Unmodified	_VEYHFLSPYVSPK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.403566	1564.79258	2.6207	0.0020531	-2.1061	-0.0016499	0.51465	0.00040318	783.902063811329	10.906	0.17735	10.906	10.835	11.012	0	357	67	1.08596037261705	0.0440992380067871	1.08596037261705	438.795837636123	0	17.8188473246682						586	21	4	NaN	NaN	NaN	8.6636E-05	1	20495	99.276	92.529	1	162980			20305	495	17127	17617	20305	20305		
VEYPIMYSTDPENGHIFNCIQR	22	Unmodified	_VEYPIMYSTDPENGHIFNCIQR_			0	0	0	O14880	O14880	O14880	MGST3	Microsomal glutathione S-transferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	895.080829	2682.22066	1.9017	0.0017021	-0.27877	-0.00024952	1.6229	0.0014526	895.414904693621	13.859	0.23052	13.859	13.753	13.983	0	486	43	0.999498404980629	0.0282418742669083	0.999498404980629	603.569605000022	0	17.0544913436539						936	27	6	NaN	NaN	NaN	0.00031366	1	37554	58.045	54.648	1	264060			20306	123	17128	17618	20306	20306		
VEYSEEELK	9	Unmodified	_VEYSEEELK_			0	0	0	P12956	P12956	P12956	XRCC6	X-ray repair cross-complementing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.269144	1124.52373	1.7239	0.000971	1.927	0.0010854	3.6509	0.0020564	563.27030842915	5.2125	0.23941	5.2125	5.1593	5.3987	0	600	52	0.922661313351899	0.0344769526882287	0.922661313351899	374.090248208364	0	13.9785765393725						610	28	4	NaN	NaN	NaN	0.0015069	1	7381	69.905	31.582	1	457890			20307	673	17129	17619	20307	20307		
VEYTLGEESEAPGQR	15	Unmodified	_VEYTLGEESEAPGQR_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	832.891748	1663.76894	2.7146	0.002261	-1.408	-0.0011727	1.3067	0.0010883	832.890908708049	7.0925	0.26609	7.0925	7.0392	7.3053	0	399	67	1.0578662689527	0.044190530874429	1.0578662689527	427.220946176735	0	17.8464149640733						1290	31	5	NaN	NaN	NaN	3.4804E-33	1	23443	240.52	210.17	1	608440			20308	1544	17130	17620	20308	20308		
VFAECNDESFWFR	13	Unmodified	_VFAECNDESFWFR_			0	0	0	Q9NX40	Q9NX40	Q9NX40	OCIAD1	OCIA domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.867022	1705.71949	1.8834	0.0016082	1.8015	0.0015382	3.6849	0.0031464	853.869021488811	14.976	0.12414	14.976	14.932	15.056	0	339	28	1.09798411722691	0.0180294071906015	1.09798411722691	443.332505020453	0	7.27972484158562						256	15	4	NaN	NaN	NaN	0.00032145	1	24640	55.754	53.453	1	56530			20309	3094	17131	17621	20309	20309		
VFANAPDSACVIGLK	15	Unmodified	_VFANAPDSACVIGLK_			0	0	0	P17858	P17858	P17858	PFKL	ATP-dependent 6-phosphofructokinase, liver type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.405783	1560.79701	1.4457	0.0011297	-0.50297	-0.00039302	0.94276	0.00073668	781.405945135549	11.616	0.22173	11.616	11.527	11.749	0	396	67	1.05987478976334	0.0441661584106905	1.05987478976334	428.26524238916	0	17.8462878066718						765	26	5	NaN	NaN	NaN	3.2771E-06	1	20367	94.791	78.912	1	273420			20310	744	17132	17622	20310	20310		
VFANNADQQLVK	12	Unmodified	_VFANNADQQLVK_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.856783	1345.69901	1.9317	0.0013017	-0.11506	-7.7534E-05	1.8166	0.0012241	673.856938556251	6.7466	0.14185	6.7466	6.7111	6.853	0	459	37	1.01763759082241	0.0241705518393689	1.01763759082241	411.775820127253	0	9.78034704726372						377	17	4	NaN	NaN	NaN	3.446E-07	1	13783	111.61	94.955	1	127150			20311	1971	17133	17623	20311	20311		
VFANPEDCVAFGK	13	Unmodified	_VFANPEDCVAFGK_			0	0	0	P10620	P10620	P10620	MGST1	Microsomal glutathione S-transferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	727.342652	1452.67075	1.9077	0.0013876	0.80868	0.00058819	2.7164	0.0019758	727.343251049797	10.41	0.26602	10.41	10.321	10.587	0	450	46	1.02367897599655	0.0302069336497983	1.02367897599655	413.91015636594	0	12.2137475942124						832	31	5	NaN	NaN	NaN	0.0053184	1	17042	54.584	46.11	1	329080			20312	631	17134	17624	20312	20312		
VFASELNAGIIK	12	Unmodified	_VFASELNAGIIK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.36117	1260.70779	0.33763	0.00021316	-0.25518	-0.00016111	0.082448	5.2055E-05	631.361213234205	11.926	0.15963	11.926	11.89	12.05	0	525	58	0.973257487423603	0.0383733409647169	0.973257487423603	394.087685922017	0	15.5379859259176						508	19	4	NaN	NaN	NaN	0.0001214	1	11248	102.55	81.271	1	183220			20313	3161	17135	17625	20313	20313		
VFASLPQVER	10	Unmodified	_VFASLPQVER_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.319306	1144.62406	0.68913	0.00039509	-0.74257	-0.00042573	-0.053443	-3.064E-05	573.318643195221	9.9307	0.18618	9.9307	9.8509	10.037	0	627	55	0.90440375274676	0.0365227258333037	0.90440375274676	366.609796642755	0	14.8048800659232						343	22	2	NaN	NaN	NaN	0.00087177	1	7928	69.716	54.134	1	126770			20314	300	17136	17626	20314	20314		
VFCVEEEDSESSLQK	15	Unmodified	_VFCVEEEDSESSLQK_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.396006	1784.77746	3.0287	0.0027059	0.040982	3.6613E-05	3.0697	0.0027425	893.39556700896	8.1567	0.18627	8.1567	8.1036	8.2898	0	345	40	1.09397730668811	0.0260496561958328	1.09397730668811	441.556943936583	0	10.5143009001282						627	22	5	NaN	NaN	NaN	4.6995E-06	1	26821	90.689	81.111	1	152380			20315	1765	17137	17627	20315	20315		
VFDAIMNFK	9	Unmodified	_VFDAIMNFK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.778428	1083.5423	1.2289	0.00066704	-1.1922	-0.00064709	0.036755	1.995E-05	542.778084535419	13.859	0.41673	13.859	13.77	14.187	0	654	112	0.886123392477847	0.0752779583048743	0.886123392477847	359.440579686576	0	30.5351976941545						2119	48	5	NaN	NaN	NaN	0.00096817	1	6299	105.04	68.471	1	3229900			20316	679	17138	17628	20316	20316		
VFDAIMNFK	9	Oxidation (M)	_VFDAIM(Oxidation (M))NFK_	VFDAIM(1)NFK	VFDAIM(86)NFK	0	1	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.775885	1099.53722	0.8985	0.00049487	2.9258	0.0016115	3.8243	0.0021063	550.776824860247	10.853	0.31923	10.853	10.746	11.066	0	651	64	0.888155670855968	0.0426719476596595	0.888155670855968	360.199114985591	0	17.3059726870937						1065	37	3	NaN	NaN	NaN	0.0034654	1	6693	85.813	76.42	1	593460			20317	679	17138	17629	20317	20317	212	
VFDFELSSQDMTTLLSYNR	19	Unmodified	_VFDFELSSQDMTTLLSYNR_			0	0	0	P15121	P15121	P15121	AKR1B1	Aldose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1133.53845	2265.06235	0.49349	0.00055939	1.0338	0.0011719	1.5273	0.0017313	1134.04197373102	19.366	0.12419	19.366	19.339	19.463	0	96	34	1.2593374219024	0.0217891209230916	1.2593374219024	507.468679417723	0	8.78024922328666						250	15	4	NaN	NaN	NaN	6.024E-07	1	35323	72.031	66.643	1	50189			20318	708	17139	17630	20318	20318		
VFDFLVDSINK	11	Unmodified	_VFDFLVDSINK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	648.845353	1295.67615	0.37873	0.00024574	-1.6662	-0.0010811	-1.2875	-0.00083537	648.844594247435	16.404	0.15072	16.404	16.351	16.502	0	543	43	0.961130371139249	0.0283044424712918	0.961130371139249	389.063407636084	0	11.4575745078862						472	18	4	NaN	NaN	NaN	3.3914E-05	1	12237	90.263	66.141	1	205420			20319	1611	17140	17631	20319	20319		
VFDFTFSPEEMK	12	Unmodified	_VFDFTFSPEEMK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.83941	1475.66427	1.2271	0.0009066	1.6573	0.0012245	2.8844	0.0021311	738.840363573751	15.81	0.14191	15.81	15.748	15.89	0	423	85	1.04178812298108	0.0563046300275727	1.04178812298108	421.170406854128	0	22.7626360997731						877	17	4	NaN	NaN	NaN	0.00067695	1	17754	85.622	68.152	1	264420			20320	698	17141	17632	20320	20320		
VFDFTFSPEEMK	12	Oxidation (M)	_VFDFTFSPEEM(Oxidation (M))K_	VFDFTFSPEEM(1)K	VFDFTFSPEEM(62)K	0	1	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.836868	1491.65918	0.69577	0.00051963	1.4604	0.0010907	2.1562	0.0016103	746.837725483511	14.125	0.097529	14.125	14.072	14.169	0	447	28	1.02569221487577	0.0181166496995924	1.02569221487577	414.621902205936	0	7.32340525851936						144	12	2	NaN	NaN	NaN	0.011992	1	18275	62.271	58.378	1	36031			20321	698	17141	17633	20321	20321	221	
VFDGIPPPYDK	11	Unmodified	_VFDGIPPPYDK_			0	0	0	P40429;Q6NVV1	P40429	P40429	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.318971	1246.62339	1.9986	0.0012478	-2.6774	-0.0016715	-0.67872	-0.00042373	624.317483311963	9.8332	0.1596	9.8332	9.7534	9.913	0	567	64	0.944945209309785	0.0425302154964563	0.944945209309785	382.670429420195	0	17.2232798970959						444	19	3	NaN	NaN	NaN	0.0057291	1	10822	63.397	34.088	1	170470			20322	1018	17142	17634	20322	20322		
VFDLQFSTDSPR	12	Unmodified	_VFDLQFSTDSPR_			0	0	0	Q15003	Q15003	Q15003	NCAPH	Condensin complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.346249	1410.67794	2.2279	0.0015737	0.87243	0.00061624	3.1004	0.0021899	706.346793340492	12.804	0.17738	12.804	12.715	12.893	0	429	49	1.03776581230406	0.0321918235731047	1.03776581230406	419.723781962348	0	13.0199644063908						562	21	4	NaN	NaN	NaN	0.00053416	1	15778	73.655	64.141	1	166780			20323	1786	17143	17635	20323	20323		
VFDMLNR	7	Unmodified	_VFDMLNR_			0	0	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.728738	893.442923	-1.4237	-0.00063743	-0.90384	-0.00040468	-2.3275	-0.0010421	447.728563204798	9.3455	0.33697	9.3455	9.2745	9.6115	0	780	73	0.800512323802183	0.0490363080759948	0.800512323802183	325.57985146786	0	19.9437702896125						1094	39	6	NaN	NaN	NaN	0.00025303	1	2225	110.23	70.47	1	494540			20324	1311;1739	17144	17636	20324	20324		
VFDMLNR	7	Oxidation (M)	_VFDM(Oxidation (M))LNR_	VFDM(1)LNR	VFDM(54)LNR	0	1	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.726195	909.437837	-0.49276	-0.00022457	1.2331	0.00056193	0.74029	0.00033737	455.725686145021	5.6292	0.19512	5.6292	5.576	5.7711	0	777	49	0.802556497112065	0.0326908593964281	0.802556497112065	326.324342880794	0	13.2923018493217						356	23	4	NaN	NaN	NaN	0.069116	1	2495	54.056	46.706	1	110780			20325	1311;1739	17144	17637	20325	20325	476	
VFDWIEANLSEQQIVSNTLVR	21	Unmodified	_VFDWIEANLSEQQIVSNTLVR_			0	0	0	Q04637	Q04637	Q04637	EIF4G1	Eukaryotic translation initiation factor 4 gamma 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	821.095573	2460.26489	0.072773	5.9754E-05	1.1716	0.00096202	1.2444	0.0010218	821.430972795003	19.295	0.044326	19.295	19.277	19.321	0	402	31	1.05585747106793	0.020089366798685	1.05585747106793	637.899804896084	0	12.1370578061124						100	6	3	NaN	NaN	NaN	0.035592	1	36629	17.238	16.54	1	20567			20326	1544	17145	17638	20326	20326		
VFEEDALSWEDK	12	Unmodified	_VFEEDALSWEDK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.335546	1466.65654	0.86771	0.00063719	2.7609	0.0020274	3.6286	0.0026646	734.337686350897	12.05	0.15961	12.05	11.997	12.157	0	441	46	1.02971785871157	0.030194421347751	1.02971785871157	416.314429496089	0	12.2075898664923						406	19	4	NaN	NaN	NaN	4.4136E-05	1	17467	103.87	67.632	1	151770			20327	1737	17146	17639	20327	20327		
VFEFGGPEVLK	11	Unmodified	_VFEFGGPEVLK_			0	0	0	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.329339	1220.64412	0.8378	0.00051217	0.48199	0.00029465	1.3198	0.00080683	611.330883651491	13.283	0.27491	13.283	13.176	13.451	0	543	79	0.961130371139249	0.0526090972687659	0.961130371139249	389.315578505682	0	21.3098469810854						956	32	4	NaN	NaN	NaN	0.0054021	1	10038	41.796	19.409	1	265580			20328	1576	17147	17640	20328	20328		
VFEHDSVELNCK	12	Unmodified	_VFEHDSVELNCK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	492.897769	1475.67148	-0.92834	-0.00045758	0.83115	0.00040967	-0.097198	-4.7908E-05	492.89834338298	5.7978	0.13299	5.7978	5.7623	5.8953	0	804	40	0.78414869089473	0.0266075709299319	0.78414869089473	475.516245555284	0	16.1351187330436						331	16	4	NaN	NaN	NaN	2.5531E-05	1	17755	106.35	97.879	1	98259			20329	634	17148	17641	20329	20329		
VFEHDSVELNCK	12	Unmodified	_VFEHDSVELNCK_			0	0	0	P10768	P10768	P10768	ESD	S-formylglutathione hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.843016	1475.67148	2.3054	0.0017033	-2.0764	-0.0015341	0.22898	0.00016918	739.341889180789	5.7889	0.28372	5.7889	5.6736	5.9573	0	435	97	1.03374239103424	0.0644637766519482	1.03374239103424	417.91770242772	0	26.0611866765399						1392	33	4	NaN	NaN	NaN	5.6572E-06	1	17756	90.306	77.71	1	493920			20330	634	17148	17641	20330	20330		
VFEHFLENLDK	11	Unmodified	_VFEHFLENLDK_			0	0	0	P49642	P49642	P49642	PRIM1	DNA primase small subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.238232	1389.69287	-1.0597	-0.00049196	-1.829	-0.00084908	-2.8887	-0.001341	464.237407350867	12.839	0.10642	12.839	12.795	12.901	0	840	31	0.759569036796863	0.0205001737706053	0.759569036796863	460.875157647882	0	12.4386597670956						260	13	4	NaN	NaN	NaN	0.025837	1	15136	26.579	18.578	1	73691			20331	1140	17149	17642	20331	20331		
VFEISPFEPWITR	13	Unmodified	_VFEISPFEPWITR_			0	0	0	Q16795	Q16795	Q16795	NDUFA9	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.924666	1619.83478	1.5349	0.0012447	-4.5682	-0.0037044	-3.0332	-0.0024597	810.91951253944	18.692	0.2394	18.692	18.55	18.789	0	375	73	1.07392668217569	0.0481347926295363	1.07392668217569	433.804124518023	0	19.4436658685203						638	28	4	NaN	NaN	NaN	0.00028329	1	22189	72.922	68.394	1	168250			20332	1907	17150	17643	20332	20332		
VFEMSQDK	8	Unmodified	_VFEMSQDK_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.228768	982.442982	0.14711	7.2412E-05	2.1826	0.0010744	2.3298	0.0011468	492.229940108953	4.7337	0.10648	4.7337	4.6893	4.7958	0	738	40	0.829104889055312	0.0265225632029411	0.829104889055312	336.746139649231	0	10.7723050365433						229	13	3	NaN	NaN	NaN	0.0078814	1	3884	75.243	50.424	1	62234			20333	1757	17151	17644	20333	20333		
VFEPNEEALGVVLHK	15	Unmodified	_VFEPNEEALGVVLHK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.970034	1679.88827	0.20107	0.00011279	-0.6199	-0.00034774	-0.41883	-0.00023495	560.969694427551	12.644	0.18622	12.644	12.591	12.777	0	672	43	0.873923798053065	0.0284775811147984	0.873923798053065	529.358679914699	0	17.2496215112546						748	22	5	NaN	NaN	NaN	1.4474E-08	1	23917	147.72	136.37	1	407840			20334	211	17152	17645	20334	20334		
VFEPNEEALGVVLHK	15	Unmodified	_VFEPNEEALGVVLHK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.951412	1679.88827	2.0395	0.0017152	0.1609	0.00013531	2.2004	0.0018505	840.951570055846	12.644	0.10641	12.644	12.609	12.715	0	282	37	1.13599383354359	0.0239780653182871	1.13599383354359	458.73651833564	0	9.68281153976307						326	13	4	NaN	NaN	NaN	5.0736E-07	1	23918	89.382	81.825	1	97547			20335	211	17152	17645	20335	20335		
VFEVMLATDR	10	Unmodified	_VFEVMLATDR_			0	0	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.805174	1179.59579	0.17316	0.0001023	-1.9426	-0.0011477	-1.7694	-0.0010454	590.80582832845	12.015	0.15074	12.015	11.926	12.077	0	582	43	0.934820374997243	0.028363289192291	0.934820374997243	378.805750205014	0	11.4933064448871						331	18	4	NaN	NaN	NaN	0.00058548	1	8871	55.235	45.156	1	72532			20336	799	17153	17646	20336	20336		
VFEVNASNLEK	11	Unmodified	_VFEVNASNLEK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.324785	1248.63502	1.631	0.0010199	0.68187	0.00042639	2.3129	0.0014463	625.325108174042	8.8487	0.19528	8.8487	8.7955	8.9908	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.670597383087	0	11.4431155630469						553	23	4	NaN	NaN	NaN	1.6941E-05	1	10877	121.8	96.543	1	254550			20337	3161	17154	17647	20337	20337		
VFEVSLADLQNDEVAFR	17	Unmodified	_VFEVSLADLQNDEVAFR_			0	0	0	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.49163	1950.96871	2.0704	0.0020218	-0.057256	-5.591E-05	2.0132	0.0019659	976.993638394202	17.69	0.38123	17.69	17.619	18	0	225	115	1.17390432875292	0.0757117548869997	1.17390432875292	473.506221511265	0	30.5391045100029						2720	44	5	NaN	NaN	NaN	2.1394E-34	1	30735	235.6	191.99	1	1119400			20338	1338	17155	17648	20338	20338		
VFEVSLADLQNDEVAFRK	18	Unmodified	_VFEVSLADLQNDEVAFRK_			0	0	1	P61247	P61247	P61247	RPS3A	40S ribosomal protein S3a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.0285	2079.06367	0.72849	0.00050559	-0.14539	-0.0001009	0.5831	0.00040469	694.362438256475	15.437	0.09766	15.437	15.411	15.508	1.7764E-15	549	64	0.957085760909907	0.0424478642563108	0.957085760909907	578.821446682946	0	25.6714029201318						377	12	4	NaN	NaN	NaN	0.0011747	1	33015	49.487	47.899	1	94741			20339	1338	17156	17649	20339	20339		
VFFDLMR	7	Unmodified	_VFFDLMR_			0	0	0	P11234;P11233	P11234	P11234	RALB;RALA	Ras-related protein Ral-B;Ras-related protein Ral-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.241481	926.468409	-1.8634	-0.00086509	-0.63557	-0.00029506	-2.499	-0.0011601	464.241289066629	14.737	0.19509	14.737	14.684	14.879	0	744	55	0.82502364452135	0.0367414308410293	0.82502364452135	335.367879882776	0	14.9352031870121						315	23	4	NaN	NaN	NaN	0.019015	1	2806	72.355	50.427	1	117250			20340	648	17157	17650	20340	20340		
VFFDVDIGGER	11	Unmodified	_VFFDVDIGGER_			0	0	0	Q08752	Q08752	Q08752	PPID	Peptidyl-prolyl cis-trans isomerase D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.311677	1252.6088	0.95709	0.00060039	-0.32038	-0.00020098	0.63671	0.00039942	627.312150920499	14.214	0.29258	14.214	14.081	14.373	0	567	34	0.944945209309785	0.0222684693182358	0.944945209309785	382.650389538809	0	9.01749474477998						457	34	4	NaN	NaN	NaN	5.5591E-05	1	10982	81.099	60.865	1	105010			20341	1578	17158	17651	20341	20341		
VFFNILEEAR	10	Unmodified	_VFFNILEEAR_			0	0	0	Q9Y276	Q9Y276	Q9Y276	BCS1L	Mitochondrial chaperone BCS1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.332413	1236.65027	0.052218	3.2341E-05	-1.062	-0.00065775	-1.0098	-0.00062541	619.331714012288	15.908	0.17737	15.908	15.863	16.041	0	576	31	0.938871150116794	0.0202510727946275	0.938871150116794	380.244221909028	0	8.20171481108804						210	21	3	NaN	NaN	NaN	0.015211	1	10528	36.24	28.594	1	49301			20342	3333	17159	17652	20342	20342		
VFFVHEGYQGLVDGGDHIK	19	Unmodified	_VFFVHEGYQGLVDGGDHIK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.353206	2116.03779	1.1376	0.00080356	-1.0128	-0.00071539	0.12482	8.8169E-05	706.351319524432	11.163	0.088672	11.163	11.119	11.208	0	504	34	0.987393073566096	0.0221977126906285	0.987393073566096	597.081385436334	0	13.4230646352119						218	11	4	NaN	NaN	NaN	0.00056815	1	33564	72.031	64.455	1	53563			20343	578	17160	17653	20343	20343		
VFGAPEVLENLEVK	14	Unmodified	_VFGAPEVLENLEVK_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.421956	1542.82936	1.4209	0.0010975	-6.278	-0.0048493	-4.8571	-0.0037518	772.918432957015	16.218	0.30147	16.218	16.058	16.36	0	375	73	1.07392668217569	0.0481879139637287	1.07392668217569	433.987670170107	0	19.4733596423065						1296	35	5	NaN	NaN	NaN	0.008277	1	19827	39.702	16.747	1	342290			20344	2354	17161	17654	20344	20344		
VFGAPNVVEDEIDQYLSK	18	Unmodified	_VFGAPNVVEDEIDQYLSK_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.00457	2021.99459	0.96426	0.00097584	0.67289	0.00068097	1.6372	0.0016568	1012.50678986577	19.038	0.10641	19.038	18.993	19.1	0	162	61	1.21569043230068	0.0397553411756255	1.21569043230068	490.239385955188	0	16.0317409173763						540	13	5	NaN	NaN	NaN	1.2267E-06	1	32019	85.081	82.692	1	152350			20345	2334	17162	17655	20345	20345		
VFGFSLITNK	10	Unmodified	_VFGFSLITNK_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.318774	1124.623	0.20836	0.00011737	-1.2538	-0.00070628	-1.0454	-0.00058891	563.318278329976	15.012	0.21284	15.012	14.95	15.163	0	648	46	0.890187667287968	0.030475726379646	0.890187667287968	360.923534456107	0	12.3562786637673						505	25	3	NaN	NaN	NaN	8.9953E-05	1	7396	121.67	70.215	1	422520			20346	480	17163	17656	20346	20346		
VFGGMNEENMTELLSSGLK	19	Unmodified	_VFGGMNEENMTELLSSGLK_			0	0	0	Q9UL63	Q9UL63	Q9UL63	MKLN1	Muskelin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.48992	2054.96528	0.91572	0.00094181	1.0804	0.0011112	1.9961	0.002053	1028.99278266487	17.601	0.053176	17.601	17.583	17.637	0	186	28	1.1997861197946	0.0178984919249219	1.1997861197946	483.772873159546	0	7.21695702332732						99	7	3	NaN	NaN	NaN	0.043611	1	32621	25.705	20.09	1	13416			20347	3275	17164	17657	20347	20347		
VFGPGIEGK	9	Unmodified	_VFGPGIEGK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.25036	902.486168	-0.69312	-0.00031346	1.1255	0.000509	0.43236	0.00019554	452.251005908513	6.1347	0.16847	6.1347	6.0727	6.2411	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	325.530465211675	0	8.31326452123881						280	20	3	NaN	NaN	NaN	0.026055	1	2377	29.31	17.661	1	121890			20348	326	17165	17658	20348	20348		
VFHGADSDIEWLQK	14	Unmodified	_VFHGADSDIEWLQK_			0	0	0	Q01780	Q01780	Q01780	EXOSC10	Exosome component 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.938733	1643.79437	-2.0478	-0.0011241	0.48799	0.00026788	-1.5598	-0.00085624	548.938980823557	10.658	0.1064	10.658	10.613	10.72	0	789	25	0.794378096728713	0.0163636329074536	0.794378096728713	481.262076895188	0	9.91366200934033						183	13	3	NaN	NaN	NaN	0.00016895	1	22858	95.311	78.659	1	47224			20349	1520	17166	17659	20349	20349		
VFHLLGVDTLVVTNAAGGLNPK	22	Unmodified	_VFHLLGVDTLVVTNAAGGLNPK_			0	0	0	P00491	P00491	P00491	PNP	Purine nucleoside phosphorylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.754711	2234.2423	0.32878	0.00024519	-1.439	-0.0010731	-1.1102	-0.00082795	746.087952896095	16.573	0.22171	16.573	16.51	16.732	0	540	31	0.963152256458504	0.0202202547375568	0.963152256458504	582.222067608545	0	12.2230711104388						642	26	5	NaN	NaN	NaN	2.5201E-08	1	35036	121.69	121.33	1	232050			20350	480	17167	17660	20350	20350		
VFIEDVSR	8	Unmodified	_VFIEDVSR_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.758549	963.502546	1.8533	0.0008947	-0.22821	-0.00011017	1.6251	0.00078453	482.758213665342	7.7132	0.3105	7.7132	7.6334	7.9438	0	687	85	0.863749705078866	0.0570343451271362	0.863749705078866	350.912553314387	0	23.171142701982						1274	36	4	NaN	NaN	NaN	0.00055744	1	3507	97.033	40.942	1	1095200			20351	488	17168	17661	20351	20351		
VFIGEFAYTYAAMYDK	16	Unmodified	_VFIGEFAYTYAAMYDK_			0	0	0	P15559	P15559	P15559	NQO1	NAD(P)H dehydrogenase [quinone] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.944938	1887.87532	1.2531	0.0011841	0.85905	0.00081176	2.1121	0.0019958	945.447084718004	17.903	0.15957	17.903	17.858	18.018	0	213	58	1.18187287897418	0.0378272416216301	1.18187287897418	476.832929291338	0	15.2616027919252						807	19	5	NaN	NaN	NaN	1.3916E-06	1	29322	81.48	79.343	1	180620			20352	715	17169	17662	20352	20352		
VFIGNLNTALVK	12	Unmodified	_VFIGNLNTALVK_			0	0	0	Q9UKM9	Q9UKM9	Q9UKM9	RALY	RNA-binding protein Raly	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.884813	1287.75507	1.0944	0.00070579	0.089598	5.7781E-05	1.184	0.00076357	644.885052379915	13.292	0.1419	13.292	13.238	13.38	0	510	37	0.983355730988811	0.0242274096445863	0.983355730988811	398.086004136599	0	9.80783697299017						407	17	4	NaN	NaN	NaN	0.005683	1	12006	53.517	0	1	239120			20353	3266	17170	17663	20353	20353		
VFIGNLNTLVVK	12	Unmodified	_VFIGNLNTLVVK_			0	0	0	P07910;O60812;B7ZW38;B2RXH8;P0DMR1	P07910	P07910	HNRNPC;HNRNPCL1;HNRNPCL3;HNRNPCL2;HNRNPCL4	Heterogeneous nuclear ribonucleoproteins C1/C2;Heterogeneous nuclear ribonucleoprotein C-like 1;Heterogeneous nuclear ribonucleoprotein C-like 3;Heterogeneous nuclear ribonucleoprotein C-like 2;Heterogeneous nuclear ribonucleoprotein C-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.900463	1315.78637	1.2203	0.00080408	0.95873	0.00063171	2.1791	0.0014358	658.901424469103	14.613	0.34582	14.613	14.551	14.897	1.7764E-15	489	58	0.997481546940468	0.0383203192355812	0.997481546940468	403.71316254587	0	15.5094771585655						1128	40	5	NaN	NaN	NaN	3.0926E-07	1	12859	155.57	138.18	1	1257200			20354	568	17171	17664	20354	20354		
VFIMDSCDELIPEYLNFIR	19	Unmodified	_VFIMDSCDELIPEYLNFIR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	792.05344	2373.13849	0.97757	0.00077428	-1.2496	-0.00098974	-0.27202	-0.00021546	792.386982113848	20.057	0.044346	20.057	20.04	20.084	0	429	31	1.03776581230406	0.0201143318791703	1.03776581230406	627.098914357528	0	12.1546456193712						154	6	5	NaN	NaN	NaN	0.00067017	1	36227	61.194	57.753	1	86508			20355	579	17172	17665	20355	20355		
VFIPHGLIMDR	11	Unmodified	_VFIPHGLIMDR_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.241031	1296.70126	-2.7014	-0.0011703	-0.39279	-0.00017017	-3.0941	-0.0013405	433.240996760314	11.553	0.16854	11.553	11.509	11.678	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	486.060339117693	0	12.4128111012312						302	20	4	NaN	NaN	NaN	0.059568	1	12260	13.175	11.191	1	92939			20356	481	17173	17666	20356	20356		
VFIQHITLSDEER	13	Unmodified	_VFIQHITLSDEER_			0	0	0	Q14527	Q14527	Q14527	HLTF	Helicase-like transcription factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	529.610617	1585.81002	-2.1635	-0.0011458	0.92062	0.00048757	-1.2429	-0.00065824	529.61112075221	9.381	0.079808	9.381	9.3632	9.443	0	777	31	0.802556497112065	0.020440313348464	0.802556497112065	486.365211791932	0	12.3872367448181						189	10	3	NaN	NaN	NaN	0.0010055	1	21134	50.09	40.347	1	42427			20357	1754	17174	17667	20357	20357		
VFITDDFHDMMPK	13	Unmodified	_VFITDDFHDMMPK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.579272	1594.71599	-1.286	-0.00068488	-1.3049	-0.00069494	-2.5908	-0.0013798	532.578804406069	14.267	0.32806	14.267	14.081	14.409	0	789	58	0.794378096728713	0.0388447150173	0.794378096728713	481.385700593096	0	23.539534171381						1867	38	5	NaN	NaN	NaN	0.00024992	1	21414	57.293	48.819	1	991740			20358	700	17175	17668	20358	20358		
VFITDDFHDMMPK	13	Unmodified	_VFITDDFHDMMPK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.365269	1594.71599	2.3394	0.0018677	1.3974	0.0011157	3.7368	0.0029833	798.366911969179	14.258	0.33692	14.258	14.072	14.409	0	348	103	1.09197348738011	0.0682004032969015	1.09197348738011	441.152870927778	0	27.5526870025437						1455	39	5	NaN	NaN	NaN	0.00024527	1	21416	86.243	77.769	1	460610			20359	700	17175	17668	20359	20359		
VFITDDFHDMMPK	13	Oxidation (M)	_VFITDDFHDM(Oxidation (M))MPK_	VFITDDFHDM(0.5)M(0.5)PK	VFITDDFHDM(0)M(0)PK	0	1	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.91091	1610.7109	-1.0402	-0.00055953	-0.90591	-0.0004873	-1.9461	-0.0010468	537.910710960875	11.154	0.18622	11.154	11.039	11.225	0	777	67	0.802556497112065	0.0449436912789537	0.802556497112065	486.300200174319	0	27.2331308065856						619	22	4	NaN	NaN	NaN	0.0027167	1	21902	51.531	48.86	2	136110			20360	700	17175	17669	20360	20360	232;233	
VFIWTCDDASSNTWSPK	17	Unmodified	_VFIWTCDDASSNTWSPK_			0	0	0	P55735	P55735	P55735	SEC13	Protein SEC13 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.45419	2012.89383	2.0968	0.0021124	0.22911	0.00023082	2.3259	0.0023433	1007.95591715536	14.347	0.16847	14.347	14.276	14.444	0	222	94	1.17589687683038	0.0617012268083816	1.17589687683038	474.206855378911	0	24.8824070497503						1224	20	5	NaN	NaN	NaN	6.1088E-19	1	31845	119.79	112.93	1	434240			20361	1275	17176	17670	20361	20361		
VFLALVEEVEDR	12	Unmodified	_VFLALVEEVEDR_			0	0	0	Q9H3U1	Q9H3U1	Q9H3U1	UNC45A	Protein unc-45 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.879924	1417.7453	0.52359	0.00037169	1.4025	0.00099558	1.9261	0.0013673	709.881199061725	16.847	0.11528	16.847	16.803	16.918	0	414	34	1.04781950764076	0.0221089774592802	1.04781950764076	423.769481167629	0	8.94153032917018						221	14	3	NaN	NaN	NaN	3.2308E-07	1	16029	109.88	91.37	1	51294			20362	2886	17177	17671	20362	20362		
VFLATNSDYK	10	Unmodified	_VFLATNSDYK_			0	0	0	P49902	P49902	P49902	NT5C2	Cytosolic purine 5-nucleotidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.295496	1156.57644	0.69665	0.00040356	3.5711	0.0020687	4.2678	0.0024723	579.296934798196	7.1014	0.16855	7.1014	6.9949	7.1634	0	579	28	0.936845902828289	0.0182272273449463	0.936845902828289	379.713833686465	0	7.38769348484072						165	20	2	NaN	NaN	NaN	0.0033936	1	8242	67.507	51.926	1	62082			20363	1153	17178	17672	20363	20363		
VFLDFFTYAPPK	12	Unmodified	_VFLDFFTYAPPK_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.879196	1443.74384	0.85626	0.00061897	0.93416	0.00067529	1.7904	0.0012943	722.880271401173	18.302	0.17733	18.302	18.257	18.435	0	441	31	1.02971785871157	0.0201198859944203	1.02971785871157	416.376177804791	0	8.13566663659412						225	21	4	NaN	NaN	NaN	0.054292	1	16784	33.723	21.705	1	65544			20364	1842	17179	17673	20364	20364		
VFLDPNILSDDGTVALR	17	Unmodified	_VFLDPNILSDDGTVALR_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.991266	1843.96798	1.1489	0.0010604	3.2549	0.0030042	4.4038	0.0040647	922.992087125875	17.309	0.24831	17.309	17.167	17.415	0	243	58	1.16194328902838	0.0379000734883808	1.16194328902838	468.873646935534	0	15.2936428510908						956	29	5	NaN	NaN	NaN	0.063062	1	28335	28.228	23.134	1	314290			20365	1105	17180	17674	20365	20365		
VFLDVLMK	8	Unmodified	_VFLDVLMK_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.780439	963.546325	-0.63615	-0.00030712	-2.1777	-0.0010514	-2.8138	-0.0013585	482.779560097729	15.234	0.15074	15.234	15.18	15.331	0	702	31	0.853568545818287	0.0203722219271942	0.853568545818287	346.776077435475	0	8.27654585348489						240	18	4	NaN	NaN	NaN	0.019378	1	3514	51.43	19.302	1	66996			20366	1765	17181	17675	20366	20366		
VFLENVIR	8	Unmodified	_VFLENVIR_			0	0	0	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.292559	988.570566	0.078702	3.898E-05	-0.35342	-0.00017505	-0.27472	-0.00013607	495.29207223511	12.015	0.58526	12.015	11.899	12.485	0	669	103	0.875957769340875	0.0691887293250515	0.875957769340875	355.745295598735	0	28.0990315142271						2706	67	5	NaN	NaN	NaN	1.4472E-07	1	4029	140.12	106.3	1	7453500			20367	1397	17182	17676	20367	20367		
VFLENVIRDAVTYTEHAK	18	Unmodified	_VFLENVIRDAVTYTEHAK_			0	0	1	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	527.031102	2104.0953	-1.0078	-0.00053115	-0.098307	-5.1811E-05	-1.1061	-0.00058296	527.281801642246	17.486	0.1596	17.486	17.433	17.592	0	714	31	0.845418525735192	0.0203778832072955	0.845418525735192	681.661311050137	0	16.4306957567933						473	19	5	NaN	NaN	NaN	0.049197	1	33377	18.396	10.397	1	169990			20368	1397	17183	17677	20368	20368		
VFLENVIRDAVTYTEHAK	18	Unmodified	_VFLENVIRDAVTYTEHAK_			0	0	1	P62805	P62805	P62805	HIST1H4A	Histone H4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	702.372378	2104.0953	0.88846	0.00062403	0.90745	0.00063737	1.7959	0.0012614	702.707693713716	17.495	0.3458	17.495	17.424	17.77	0	543	43	0.961130371139249	0.0283122781138182	0.961130371139249	581.221683301694	0	17.1212048204385						1394	40	6	NaN	NaN	NaN	2.6425E-11	1	33379	205.37	181.44	1	1577400			20369	1397	17183	17677	20369	20369		
VFLGNVETFIK	11	Unmodified	_VFLGNVETFIK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.858264	1265.70197	0.76275	0.00048347	0.82807	0.00052488	1.5908	0.0010084	633.858816880482	15.304	0.10641	15.304	15.269	15.375	-1.7764E-15	486	37	0.999498404980629	0.0242006280672292	0.999498404980629	404.695750738497	0	9.79880637648466						267	13	4	NaN	NaN	NaN	0.00019247	1	11389	72.042	40.089	1	99265			20370	408	17184	17678	20370	20370		
VFLHLADIYAK	11	Unmodified	_VFLHLADIYAK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.366256	1288.71796	1.3318	0.00085951	1.1297	0.00072909	2.4616	0.0015886	645.366967855515	12.414	0.10638	12.414	12.369	12.476	0	441	37	1.02971785871157	0.0241538670444676	1.02971785871157	416.851196353708	0	9.77798752238112						261	13	4	NaN	NaN	NaN	0.00053495	1	12033	74.269	71.39	1	89555			20371	1766	17185	17679	20371	20371		
VFLLGEEVAQYDGAYK	16	Unmodified	_VFLLGEEVAQYDGAYK_			0	0	0	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.453985	1800.89342	1.398	0.0012603	2.5798	0.0023255	3.9778	0.0035858	901.957404727075	15.677	0.23935	15.677	15.633	15.872	0	204	103	1.18784641916898	0.0677793147011738	1.18784641916898	479.411807278633	0	27.3555598035391						1390	28	5	NaN	NaN	NaN	1.9335E-08	1	27238	140.01	117.05	1	503250			20372	644	17186	17680	20372	20372		
VFLMDPAWNPAAEDQCFDR	19	Unmodified	_VFLMDPAWNPAAEDQCFDR_			0	0	0	Q14527	Q14527	Q14527	HLTF	Helicase-like transcription factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1141.50389	2280.99322	-0.43057	-0.0004915	2.9595	0.0033783	2.529	0.0028868	1142.0083245153	17.051	0.088676	17.051	17.007	17.096	0	75	67	1.27319752866042	0.0435693076884749	1.27319752866042	513.031959451155	0	17.5561503947203						363	11	4	NaN	NaN	NaN	2.8135E-05	1	35463	56.473	55.998	1	56069			20373	1754	17187	17681	20373	20373		
VFLQDHCLAEGYGTK	15	Unmodified	_VFLQDHCLAEGYGTK_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.947012	1736.81921	-1.0174	-0.00059003	-0.20329	-0.0001179	-1.2207	-0.00070793	580.281378891904	8.5736	0.097516	8.5736	8.5382	8.6357	0	750	34	0.820941264895493	0.0224577750816375	0.820941264895493	497.132534782107	0	13.5996217138898						325	12	4	NaN	NaN	NaN	0.00012198	1	25508	54.199	36.468	1	98527			20374	156	17188	17682	20374	20374		
VFLWGSFR	8	Unmodified	_VFLWGSFR_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.27417	1010.53379	-0.70649	-0.00035768	-1.3405	-0.00067867	-2.047	-0.0010363	506.273560670188	15.118	0.16849	15.118	15.074	15.242	0	705	31	0.851531465363931	0.0203750522723063	0.851531465363931	345.722087092399	0	8.27227869164875						323	20	3	NaN	NaN	NaN	0.00032397	1	4522	84.699	75.306	1	86536			20375	758	17189	17683	20375	20375		
VFMQEFK	7	Unmodified	_VFMQEFK_			0	0	0	O15144	O15144	O15144	ARPC2	Actin-related protein 2/3 complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.733489	927.452425	-0.66141	-0.00030738	-0.17802	-8.273E-05	-0.83943	-0.00039011	464.733492724982	8.4229	0.17736	8.4229	8.3785	8.5559	0	729	25	0.835224628594324	0.0163159042618426	0.835224628594324	339.509261718709	0	6.63222852938867						271	21	3	NaN	NaN	NaN	0.036857	1	2820	40.203	28.554	1	55225			20376	148	17190	17684	20376	20376		
VFNCISYSPLCK	12	Unmodified	_VFNCISYSPLCK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.354705	1486.69486	1.4089	0.0010487	3.2852	0.0024454	4.6941	0.0034941	744.356734192973	11.261	0.079815	11.261	11.225	11.305	0	429	31	1.03776581230406	0.0201115556839417	1.03776581230406	419.515356243374	0	8.13006783160938						182	10	3	NaN	NaN	NaN	0.056424	1	18129	40.533	35.037	1	48301			20377	2823	17191	17685	20377	20377		
VFNDTCR	7	Unmodified	_VFNDTCR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.205627	910.396701	-0.39466	-0.00018005	1.6535	0.00075435	1.2589	0.00057431	456.206598922964	2.6853	0.23945	2.6853	2.6409	2.8804	0	801	22	0.78619514174348	0.0143231624709025	0.78619514174348	319.666705744488	0	5.82379350852108						190	28	2	NaN	NaN	NaN	0.006951	1	2507	80.294	66.646	1	38714			20378	1055	17192	17686	20378	20378		
VFNFLWR	7	Unmodified	_VFNFLWR_			0	0	0	Q96CW5	Q96CW5	Q96CW5	TUBGCP3	Gamma-tubulin complex component 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.268887	980.523222	-1.8267	-0.00089739	-1.0175	-0.00049987	-2.8442	-0.0013973	491.2685712666	15.757	0.062091	15.757	15.73	15.792	0	759	16	0.814815566123307	0.0102123385459847	0.814815566123307	330.951401726868	0	4.14791751314124						42	8	2	NaN	NaN	NaN	0.068224	1	3855	31.058	19.409	1	5898.3			20379	2500	17193	17687	20379	20379		
VFNPYTEFK	9	Unmodified	_VFNPYTEFK_			0	0	0	Q96C19	Q96C19	Q96C19	EFHD2	EF-hand domain-containing protein D2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.787307	1143.56006	1.4977	0.00085784	3.1228	0.0017887	4.6205	0.0026466	572.78721541256	10.826	0.31036	10.826	10.676	10.986	0	570	37	0.942920803299286	0.0242911943445451	0.942920803299286	382.227313168432	0	9.84680570783911						530	36	4	NaN	NaN	NaN	0.0057195	1	7880	67.464	47.977	1	172660			20380	2488	17194	17688	20380	20380		
VFNTTPDDLDLHVIYDVSHNIAK	23	Unmodified	_VFNTTPDDLDLHVIYDVSHNIAK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	657.334147	2625.30748	0.029061	1.9103E-05	-1.7726	-0.0011652	-1.7435	-0.0011461	657.583600206885	16.475	0.16847	16.475	16.422	16.59	0	603	34	0.920633820089869	0.0223055201987317	0.920633820089869	741.341965300103	0	17.9615584614899						491	20	6	NaN	NaN	NaN	2.4782E-06	1	37341	72.075	68.316	1	193840			20381	3395	17195	17689	20381	20381		
VFNTTPDDLDLHVIYDVSHNIAK	23	Unmodified	_VFNTTPDDLDLHVIYDVSHNIAK_			0	0	0	Q9Y3I0	Q9Y3I0	Q9Y3I0	RTCB	tRNA-splicing ligase RtcB homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	876.10977	2625.30748	1.6906	0.0014812	-2.3028	-0.0020175	-0.61215	-0.00053631	876.441519100536	16.475	0.088646	16.475	16.431	16.519	0	318	46	1.11199926528787	0.0300200623278843	1.11199926528787	671.58084759596	0	18.1303167478486						434	11	5	NaN	NaN	NaN	0.005428	1	37342	51.577	47.137	1	145430			20382	3395	17195	17689	20382	20382		
VFNVFCLYGNVEK	13	Unmodified	_VFNVFCLYGNVEK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.895051	1587.77555	0.86587	0.00068827	1.1493	0.00091361	2.0152	0.0016019	794.896120727426	16.768	0.18621	16.768	16.706	16.892	0	381	142	1.06991323971056	0.0941278735736042	1.06991323971056	432.256888320911	0	38.0287113244782						1541	22	5	NaN	NaN	NaN	1.2699E-05	1	21201	129.69	93.476	1	634570			20383	704	17196	17690	20383	20383		
VFNYNTLER	9	Unmodified	_VFNYNTLER_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.293288	1154.57202	0.92194	0.00053315	0.16164	9.3476E-05	1.0836	0.00062663	578.293452749512	8.3164	0.14193	8.3164	8.2632	8.4051	0	603	37	0.920633820089869	0.024331609289763	0.920633820089869	373.150548511449	0	9.86206801717867						344	17	3	NaN	NaN	NaN	0.00011552	1	8190	113.7	83.136	1	107730			20384	973	17197	17691	20384	20384		
VFPGSTTEDYNLIVIER	17	Unmodified	_VFPGSTTEDYNLIVIER_			0	0	0	Q13263	Q13263	Q13263	TRIM28	Transcription intermediary factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.00183	1951.98911	1.9047	0.0018609	-4.5979	-0.0044922	-2.6932	-0.0026313	977.499471298335	15.189	0.45221	15.189	14.897	15.349	0	228	82	1.17191150690002	0.0537840649639687	1.17191150690002	472.700666400848	0	21.6942688936184						1135	52	3	NaN	NaN	NaN	0.050839	1	30753	41.87	35.348	1	331990			20385	1648	17198	17692	20385	20385		
VFQASPEDHEK	11	Unmodified	_VFQASPEDHEK_			0	0	0	Q8TCC3	Q8TCC3	Q8TCC3	MRPL30	39S ribosomal protein L30, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.804217	1285.59388	2.4006	0.0015455	0.52529	0.00033818	2.9259	0.0018837	643.804479367542	2.7917	0.044339	2.7917	2.774	2.8183	0	528	16	0.971237000454584	0.0101038329050565	0.971237000454584	393.187063673386	0	4.0903470418923						47	6	2	NaN	NaN	NaN	0.00078554	1	11918	57.032	41.451	1	7550.9			20386	2341	17199	17693	20386	20386		
VFQFLNAK	8	Unmodified	_VFQFLNAK_			0	0	0	P83731	P83731	P83731	RPL24	60S ribosomal protein L24	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.774003	965.533452	0.19997	9.6739E-05	-0.59951	-0.00029003	-0.39955	-0.00019329	483.773804345468	11.057	0.22166	11.057	10.977	11.199	0	720	52	0.841341816837976	0.0346592613234649	0.841341816837976	341.798866284867	0	14.0804795263286						766	26	4	NaN	NaN	NaN	0.00052503	1	3557	105.22	71.404	1	537060			20387	1481	17200	17694	20387	20387		
VFQGTDEQLNDLYHNHQR	18	Unmodified	_VFQGTDEQLNDLYHNHQR_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	554.263525	2213.02499	-0.60696	-0.00033641	1.585	0.00087853	0.97808	0.00054212	554.515158157438	7.997	0.070953	7.997	7.9615	8.0325	0	744	31	0.82502364452135	0.0204090624710167	0.82502364452135	665.002559551493	0	16.4505331106559						141	9	4	NaN	NaN	NaN	0.00091767	1	34821	49.097	37.417	1	35036			20388	2436	17201	17695	20388	20388		
VFQGTDEQLNDLYHNHQR	18	Unmodified	_VFQGTDEQLNDLYHNHQR_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.682274	2213.02499	1.2956	0.00095704	1.4645	0.0010818	2.7601	0.0020388	739.01762839301	7.997	0.079832	7.997	7.9615	8.0414	0	516	25	0.979317271586824	0.0161560731115115	0.979317271586824	592.02879563558	0	9.76686594213766						168	10	4	NaN	NaN	NaN	2.4452E-07	1	34823	96.313	89.002	1	36134			20389	2436	17201	17695	20389	20389		
VFQNEVLGTLQR	12	Unmodified	_VFQNEVLGTLQR_			0	0	0	Q13144	Q13144	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.385708	1402.75686	1.268	0.00089062	-0.1695	-0.00011905	1.0985	0.00077157	702.384684810622	11.456	0.14191	11.456	11.385	11.527	0	447	28	1.02569221487577	0.0181216541002778	1.02569221487577	414.863367631683	0	7.32969436451094						193	17	3	NaN	NaN	NaN	1.8147E-07	1	15558	123.42	99.298	1	68590			20390	1633	17202	17696	20390	20390		
VFQSLPHENK	10	Unmodified	_VFQSLPHENK_			0	0	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.814387	1197.61422	2.1874	0.001312	-0.6963	-0.00041765	1.4911	0.00089438	599.814009059181	4.2017	0.36357	4.2017	4.0686	4.4322	0	558	67	0.951016745717027	0.0445277082686212	0.951016745717027	385.301770382827	0	18.0402762666965						1026	42	4	NaN	NaN	NaN	5.2641E-10	1	9389	180.34	126.46	1	551770			20391	505	17203	17697	20391	20391		
VFQSSTSQEQVYNDCAK	17	Unmodified	_VFQSSTSQEQVYNDCAK_			0	0	0	P33176	P33176	P33176	KIF5B	Kinesin-1 heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.944186	1989.87382	2.9499	0.0029379	-2.4073	-0.0023975	0.54263	0.00054043	996.443280939937	5.7711	0.079794	5.7711	5.7357	5.8155	0	270	40	1.14398322290989	0.0259601635966487	1.14398322290989	461.373518505526	0	10.46984936466						271	10	4	NaN	NaN	NaN	1.8572E-14	1	31451	135.24	128.72	1	57783			20392	944	17204	17698	20392	20392		
VFQTEAELQEVISDLQSK	18	Unmodified	_VFQTEAELQEVISDLQSK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.52841	2063.04227	1.1992	0.0012382	-1.9862	-0.0020508	-0.787	-0.0008126	1033.02588494313	19.02	0.11529	19.02	18.949	19.064	0	204	52	1.18784641916898	0.0338268396719554	1.18784641916898	478.946020566225	0	13.6391624268642						264	14	4	NaN	NaN	NaN	1.094E-14	1	32757	110.9	101.33	1	55168			20393	2436	17205	17699	20393	20393		
VFQTEAELQEVISDLQSK	18	Unmodified	_VFQTEAELQEVISDLQSK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	688.688032	2063.04227	-0.1981	-0.00013643	0.9685	0.00066699	0.7704	0.00053056	689.023081484054	19.029	0.053192	19.029	18.993	19.046	0	546	22	0.959108205975751	0.0141571162745744	0.959108205975751	580.074422955981	0	8.56230923948749						125	7	3	NaN	NaN	NaN	0.0018962	1	32758	90.156	82.949	1	26179			20394	2436	17205	17699	20394	20394		
VFQVEYAMK	9	Unmodified	_VFQVEYAMK_			0	0	0	P25788	P25788	P25788	PSMA3	Proteasome subunit alpha type-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.78371	1113.55287	0.76514	0.00042678	1.4407	0.00080359	2.2058	0.0012304	557.783817007355	9.647	0.18622	9.647	9.6026	9.7889	0	624	37	0.906433495720521	0.0243552312702084	0.906433495720521	367.554574731607	0	9.87593321989453						430	22	4	NaN	NaN	NaN	0.0016348	1	7077	60.589	44.132	1	172050			20395	843	17206	17700	20395	20395		
VFSATLGLVDIVK	13	Unmodified	_VFSATLGLVDIVK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.405578	1360.7966	-0.014284	-9.7334E-06	0.28067	0.00019125	0.26639	0.00018152	681.405710723073	16.768	0.14186	16.768	16.732	16.874	0	462	49	1.01562323939346	0.0322452204768515	1.01562323939346	410.914378011921	0	13.0462007978625						319	17	3	NaN	NaN	NaN	0.0002422	1	14240	81.799	71.711	1	99437			20396	611	17207	17701	20396	20396		
VFSATLGLVDIVK	13	Unmodified	_VFSATLGLVDIVK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.405578	1360.7966	0.45138	0.00030758	1.531	0.0010432	1.9824	0.0013508	681.406491318392	16.777	0.17735	16.777	16.723	16.901	0	399	43	1.0578662689527	0.0281251167294885	1.0578662689527	428.005620187008	0	11.3792342018374						530	21	4	NaN	NaN	NaN	2.2368E-05	1	14241	135.28	100.5	1	241820			20397	611	17207	17701	20397	20397		
VFSDEVQQQAQLSTIR	16	Unmodified	_VFSDEVQQQAQLSTIR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.976147	1847.93774	2.7158	0.002512	-1.5227	-0.0014085	1.1931	0.0011036	925.476170952808	10.41	0.1419	10.41	10.374	10.516	0	285	61	1.13399579921816	0.0399744528588621	1.13399579921816	457.588801524288	0	16.1304495024472						582	17	5	NaN	NaN	NaN	5.0099E-13	1	28436	135.13	131.06	1	211810			20398	3329	17208	17702	20398	20398		
VFSDIIYTVASCTENEASR	19	Unmodified	_VFSDIIYTVASCTENEASR_			0	0	0	Q8NI27	Q8NI27	Q8NI27	THOC2	THO complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1081.50715	2160.99975	0.023699	2.5631E-05	0.81405	0.0008804	0.83775	0.00090603	1082.01061358567	17.007	0.15077	17.007	16.918	17.069	0	132	37	1.23554629282893	0.023813968179581	1.23554629282893	498.027853641774	0	9.59900857459206						377	18	5	NaN	NaN	NaN	7.0638E-05	1	34185	70.598	69.582	1	64810			20399	2328	17209	17703	20399	20399		
VFSGLVSTGLK	11	Unmodified	_VFSGLVSTGLK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.324057	1106.63356	1.5835	0.0008778	-0.10903	-6.0438E-05	1.4745	0.00081736	554.323906651257	10.8	0.31922	10.8	10.738	11.057	0	600	79	0.922661313351899	0.0527112149665917	0.922661313351899	374.163485461277	0	21.3757872248367						1359	37	5	NaN	NaN	NaN	0.00044932	1	6906	92.732	73.245	1	1313400			20400	679	17210	17704	20400	20400		
VFSIGPVFR	9	Unmodified	_VFSIGPVFR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.295102	1020.57565	0.14433	7.3795E-05	-9.0344	-0.0046192	-8.8901	-0.0045454	511.290415157028	13.868	0.18624	13.868	13.788	13.974	0	723	64	0.839303037468863	0.0427905997016369	0.839303037468863	340.712329939352	0	17.3707043499026						680	22	3	NaN	NaN	NaN	0.00010024	1	4756	117.18	85.049	1	291890			20401	705	17211	17705	20401	20401		
VFSLSSEFK	9	Unmodified	_VFSLSSEFK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.274032	1042.53351	0.61427	0.00032082	-0.092879	-4.8508E-05	0.52139	0.00027231	522.273855723219	11.42	0.14191	11.42	11.358	11.5	0	639	40	0.896281965493857	0.0264049676271125	0.896281965493857	363.740712261757	0	10.7160046745361						325	17	3	NaN	NaN	NaN	0.00033058	1	5285	94.806	69.955	1	108160			20402	350	17212	17706	20402	20402		
VFSWLQQEGHLSEEEMAR	18	Unmodified	_VFSWLQQEGHLSEEEMAR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.51003	2175.0055	0.50204	0.00054647	-0.38001	-0.00041364	0.12203	0.00013283	1089.01134016949	13.114	0.062063	13.114	13.088	13.15	0	96	52	1.2593374219024	0.0336741026065075	1.2593374219024	507.596782564306	0	13.5729041649396						311	8	4	NaN	NaN	NaN	0.0016378	1	34373	59.997	59.186	1	60308			20403	801	17213	17707	20403	20403		
VFSWLQQEGHLSEEEMAR	18	Unmodified	_VFSWLQQEGHLSEEEMAR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.009111	2175.0055	0.80422	0.00058387	-0.16114	-0.00011699	0.64308	0.00046688	726.343433485754	13.114	0.15076	13.114	13.079	13.23	0	537	52	0.965173861991602	0.0343577961345568	0.965173861991602	583.542224499102	0	20.7726561760334						540	18	5	NaN	NaN	NaN	1.9507E-06	1	34374	113.34	106.35	1	173310			20404	801	17213	17707	20404	20404		
VFTAIANQPWAQK	13	Unmodified	_VFTAIANQPWAQK_			0	0	0	Q16401	Q16401	Q16401	PSMD5	26S proteasome non-ATPase regulatory subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.396076	1472.7776	1.7294	0.0012753	-8.1028	-0.005975	-6.3734	-0.0046997	737.890774241976	11.323	0.20401	11.323	11.243	11.447	0	432	58	1.035754240522	0.0382357127621848	1.035754240522	418.738712585615	0	15.4580811841635						510	24	3	NaN	NaN	NaN	0.0043146	1	17675	59.645	47.688	1	150450			20405	1881	17214	17708	20405	20405		
VFTSSTISGGYAEYALAADHTVYK	24	Unmodified	_VFTSSTISGGYAEYALAADHTVYK_			0	0	0	Q08257	Q08257	Q08257	CRYZ	Quinone oxidoreductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.083221	2550.22783	1.6962	0.0014436	0.46017	0.00039164	2.1564	0.0018352	851.418058421747	13.629	0.11527	13.629	13.575	13.691	0	375	49	1.07392668217569	0.0320898495597994	1.07392668217569	648.687839590467	0	19.3833485369386						386	14	5	NaN	NaN	NaN	4.7105E-13	1	37030	95.001	92.55	1	128410			20406	1576	17215	17709	20406	20406		
VFTTQELVQAFTHAPATLEADR	22	Unmodified	_VFTTQELVQAFTHAPATLEADR_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	815.751806	2444.23359	0.54813	0.00044714	-1.5721	-0.0012825	-1.024	-0.00083533	816.418981979447	18.656	0.079806	18.656	18.612	18.692	0	453	34	1.02166545906632	0.0221486894009117	1.02166545906632	617.265329111572	0	13.3816974344401						252	10	6	NaN	NaN	NaN	0.015219	1	36550	30.392	28.768	1	39045			20407	434	17216	17710	20407	20407		
VFTTQELVQAFTHAPATLEADR	22	Unmodified	_VFTTQELVQAFTHAPATLEADR_			0	0	0	O95433	O95433	O95433	AHSA1	Activator of 90 kDa heat shock protein ATPase homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	815.751806	2444.23359	0.89109	0.00072691	0.077452	6.3182E-05	0.96855	0.00079009	816.086599239982	18.656	0.1596	18.656	18.612	18.772	0	525	46	0.973257487423603	0.030307312656189	0.973257487423603	588.018408908631	0	18.3109382631773						735	19	6	NaN	NaN	NaN	7.8246E-30	1	36551	199.96	183.28	1	573380			20408	434	17216	17710	20408	20408		
VFTTVGSAEK	10	Unmodified	_VFTTVGSAEK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.776939	1037.53933	1.1416	0.0005934	-1.0103	-0.00052512	0.13137	6.8281E-05	519.776901488083	4.5741	0.22167	4.5741	4.5297	4.7514	0	714	52	0.845418525735192	0.0346351908401327	0.845418525735192	343.120183646135	0	14.056982050814						341	26	4	NaN	NaN	NaN	0.00077196	1	5182	72.042	52.554	1	202430			20409	1127	17217	17711	20409	20409		
VFVDLLPATQCTK	13	Unmodified	_VFVDLLPATQCTK_			0	0	0	Q14CX7	Q14CX7	Q14CX7	NAA25	N-alpha-acetyltransferase 25, NatB auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.397427	1490.7803	1.118	0.00083449	-4.5053	-0.0033628	-3.3873	-0.0025283	746.393455155475	13.708	0.20391	13.708	13.629	13.832	0	420	25	1.04379886199097	0.0160803646300043	1.04379886199097	421.943573845995	0	6.50030074547971						200	24	2	NaN	NaN	NaN	0.0044609	1	18262	54.27	22.13	1	66621			20410	1785	17218	17712	20410	20410		
VFVGGLSPDTSEEQIK	16	Unmodified	_VFVGGLSPDTSEEQIK_			0	0	0	O14979	O14979	O14979	HNRNPDL	Heterogeneous nuclear ribonucleoprotein D-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	853.435792	1704.85703	2.8178	0.0024048	0.54532	0.00046539	3.3631	0.0028702	853.436512271794	10.702	0.266	10.702	10.622	10.888	0	300	106	1.12400150285141	0.0700661883655243	1.12400150285141	453.839387062835	0	28.2907059296363						1914	31	6	NaN	NaN	NaN	8.1397E-13	1	24633	187.51	166.36	1	1493100			20411	134	17219	17713	20411	20411		
VFVHYTGWLLDGTK	14	Unmodified	_VFVHYTGWLLDGTK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	545.955836	1634.84568	-0.78155	-0.00042669	-1.1595	-0.00063301	-1.941	-0.0010597	545.955319493697	13.691	0.31034	13.691	13.637	13.948	0	729	43	0.835224628594324	0.0285568061062612	0.835224628594324	506.031464008276	0	17.3015041781899						716	36	5	NaN	NaN	NaN	4.9396E-08	1	22631	134.2	121.6	1	478310			20412	1530	17220	17714	20412	20412		
VFVHYTGWLLDGTK	14	Unmodified	_VFVHYTGWLLDGTK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.430116	1634.84568	2.1152	0.0017311	2.0158	0.0016498	4.131	0.0033809	818.432005583855	13.682	0.23938	13.682	13.646	13.886	0	336	52	1.09998710857178	0.034050864491993	1.09998710857178	444.29640683573	0	13.7535036779529						656	28	5	NaN	NaN	NaN	1.1818E-12	1	22633	192.95	146.88	1	372910			20413	1530	17220	17714	20413	20413		
VFVLDEADVMIATQGHQDQSIR	22	Unmodified	_VFVLDEADVMIATQGHQDQSIR_			0	0	0	Q9NUU7	Q9NUU7	Q9NUU7	DDX19A	ATP-dependent RNA helicase DDX19A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.744434	2471.21147	1.8753	0.0015467	1.3429	0.0011076	3.2182	0.0026542	825.079674740721	15.322	0.15958	15.322	15.287	15.446	0	351	46	1.08996939197032	0.0300697247632449	1.08996939197032	658.492254789171	0	18.166272379856						515	19	5	NaN	NaN	NaN	1.8826E-08	1	36684	81.373	75.268	1	123970			20414	3058	17221	17715	20414	20414		
VFWDPSVNLFGHVGSTTASR	20	Unmodified	_VFWDPSVNLFGHVGSTTASR_			0	0	0	O60341	O60341	O60341	KDM1A	Lysine-specific histone demethylase 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.363994	2176.07015	0.37525	0.00027256	-1.7806	-0.0012934	-1.4054	-0.0010208	726.696953624935	16.103	0.0887	16.103	16.067	16.156	0	579	25	0.936845902828289	0.0162053462177963	0.936845902828289	566.413444684921	0	9.79769025602081						215	11	4	NaN	NaN	NaN	0.00086211	1	34395	43.177	40.462	1	55520			20415	257	17222	17716	20415	20415		
VFWLPHNMDFR	11	Unmodified	_VFWLPHNMDFR_			0	0	0	O00411	O00411	O00411	POLRMT	DNA-directed RNA polymerase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	487.908052	1460.70233	-2.3235	-0.0011337	-0.66952	-0.00032666	-2.9931	-0.0014603	488.241852743135	14.595	0.070938	14.595	14.551	14.622	0	795	16	0.790287188799094	0.0102294058339829	0.790287188799094	479.284263005642	0	6.20381211490513						100	9	3	NaN	NaN	NaN	0.029906	1	17286	15.148	10.62	1	18526			20416	75	17223	17717	20416	20416		
VFYELQHSDK	10	Unmodified	_VFYELQHSDK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.311677	1264.6088	2.3211	0.00147	0.36322	0.00023003	2.6843	0.0017	633.312015045484	5.7179	0.36358	5.7179	5.5051	5.8687	0	507	73	0.985374541851584	0.0484883664800192	0.985374541851584	398.980739133397	0	19.6330668957783						718	42	4	NaN	NaN	NaN	1.4347E-05	1	11349	100.84	83.441	1	194080			20417	2452	17224	17718	20417	20417		
VFYYLVQDLK	10	Unmodified	_VFYYLVQDLK_			0	0	0	P61326;Q96A72	P61326	P61326	MAGOH;MAGOHB	Protein mago nashi homolog;Protein mago nashi homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.352814	1286.69108	1.0991	0.00070822	0.063119	4.0671E-05	1.1622	0.00074889	644.352776529956	14.684	0.15081	14.684	14.639	14.79	0	465	40	1.01360860968299	0.0261974290560794	1.01360860968299	410.336696648887	0	10.605441189896						456	18	4	NaN	NaN	NaN	0.003911	1	11971	67.507	52.745	1	206820			20418	1342	17225	17719	20418	20418		
VGAEDADGIDMAYR	14	Unmodified	_VGAEDADGIDMAYR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.830105	1481.64566	1.7305	0.0012838	0.60752	0.00045068	2.3381	0.0017344	741.831025771662	8.8221	0.26628	8.8221	8.7599	9.0262	0	474	46	1.00756305028564	0.0302361592844221	1.00756305028564	407.318743278513	0	12.2233089014214						973	31	6	NaN	NaN	NaN	5.2472E-24	1	17949	180.81	171.3	1	571020			20419	1136	17226	17720	20419	20419		
VGAEDADGIDMAYR	14	Oxidation (M)	_VGAEDADGIDM(Oxidation (M))AYR_	VGAEDADGIDM(1)AYR	VGAEDADGIDM(100)AYR	0	1	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.827563	1497.64057	1.8311	0.001373	3.4601	0.0025945	5.2912	0.0039675	750.332318756698	6.9151	0.14185	6.9151	6.8353	6.9771	0	474	73	1.00756305028564	0.0483544861138231	1.00756305028564	407.278477247011	0	19.5459147364688						546	17	3	NaN	NaN	NaN	3.1325E-05	1	18458	103.76	97.013	1	160600			20420	1136	17226	17721	20420	20420	412	
VGAEELTADQNLK	13	Unmodified	_VGAEELTADQNLK_			0	0	0	P56182	P56182	P56182	RRP1	Ribosomal RNA processing protein 1 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.356813	1386.69907	1.3169	0.00091441	-1.3061	-0.0009069	0.010806	7.503E-06	694.355509350021	7.0836	0.15971	7.0836	7.0303	7.19	0	525	106	0.973257487423603	0.0706194148516827	0.973257487423603	393.699509955131	0	28.566776397503						525	19	4	NaN	NaN	NaN	1.187E-11	1	15046	168.69	116.09	1	192830			20421	1283	17227	17722	20421	20421		
VGAFTMVCK	9	Unmodified	_VGAFTMVCK_			0	0	0	P00505	P00505	P00505	GOT2	Aspartate aminotransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.751356	1011.48816	-0.039484	-2.0009E-05	-0.45619	-0.00023118	-0.49568	-0.00025119	506.751611675161	7.8995	0.30161	7.8995	7.8197	8.1213	8.8818E-16	732	37	0.833184998970724	0.0244806636319601	0.833184998970724	338.269123215165	0	9.93903230703688						772	35	5	NaN	NaN	NaN	7.1997E-05	1	4540	90.308	65.458	1	558290			20422	482	17228	17723	20422	20422		
VGAIPANALDDGQWSQGLISAAR	23	Unmodified	_VGAIPANALDDGQWSQGLISAAR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.59548	2309.17641	-0.078677	-9.0919E-05	-0.2965	-0.00034263	-0.37517	-0.00043355	1156.09663018733	16.165	0.088691	16.165	16.129	16.218	0	75	40	1.27319752866042	0.0257296295668654	1.27319752866042	512.994051460413	0	10.3669278465921						236	11	3	NaN	NaN	NaN	0.00066317	1	35712	34.417	32.685	1	43086			20423	3406	17229	17724	20423	20423		
VGAPLICCEIK	11	Unmodified	_VGAPLICCEIK_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.327959	1258.64136	1.4539	0.00091644	-0.61661	-0.00038867	0.8373	0.00052777	630.328292665511	9.8952	0.18619	9.8952	9.8066	9.9928	0	546	40	0.959108205975751	0.0262917911447993	0.959108205975751	388.365322682199	0	10.6461605564671						446	22	4	NaN	NaN	NaN	0.033186	1	11172	19.324	15.121	1	108890			20424	260	17230	17725	20424	20424		
VGASASDGSVCVLDLR	16	Unmodified	_VGASASDGSVCVLDLR_			0	0	0	Q9BZK7;O60907	Q9BZK7	Q9BZK7	TBL1XR1;TBL1X	F-box-like/WD repeat-containing protein TBL1XR1;F-box-like/WD repeat-containing protein TBL1X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.398686	1604.78282	2.061	0.0016558	-1.902	-0.001528	0.15907	0.0001278	803.397757916871	11.367	0.15968	11.367	11.332	11.491	0	408	58	1.0518390438467	0.0381671761516003	1.0518390438467	424.915778151744	0	15.4185523433333						437	19	4	NaN	NaN	NaN	1.9335E-08	1	21735	130.71	123.57	1	104790			20425	2814	17231	17726	20425	20425		
VGASEAALFLK	11	Unmodified	_VGASEAALFLK_			0	0	0	Q9UBC2	Q9UBC2	Q9UBC2	EPS15L1	Epidermal growth factor receptor substrate 15-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.316232	1104.61791	0.156	8.632E-05	-3.1324	-0.0017332	-2.9764	-0.0016469	553.314528590124	11.438	0.079811	11.438	11.385	11.465	0	636	22	0.898312834727904	0.0142160854587913	0.898312834727904	364.297725436194	0	5.76512702149341						112	10	2	NaN	NaN	NaN	0.016639	1	6848	28.647	16.58	1	39244			20426	3170	17232	17727	20426	20426		
VGAVAGNDWLIWDITR	16	Unmodified	_VGAVAGNDWLIWDITR_			0	0	0	Q8NFH4	Q8NFH4	Q8NFH4	NUP37	Nucleoporin Nup37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.467761	1784.92097	1.2328	0.0011015	-0.71163	-0.00063582	0.52118	0.00046566	893.467124194585	18.834	0.070923	18.834	18.807	18.878	0	321	31	1.10999792833052	0.0200147497946634	1.10999792833052	448.022997426589	0	8.07845489336648						227	9	4	NaN	NaN	NaN	0.00011414	1	26833	68.108	65.971	1	61276			20427	2318	17233	17728	20427	20427		
VGCNPNEDVAIFAVDSLR	18	Unmodified	_VGCNPNEDVAIFAVDSLR_			0	0	0	Q9Y6D5;Q9Y6D6	Q9Y6D5;Q9Y6D6	Q9Y6D5	ARFGEF2;ARFGEF1	Brefeldin A-inhibited guanine nucleotide-exchange protein 2;Brefeldin A-inhibited guanine nucleotide-exchange protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.480739	1974.94693	1.3122	0.0012971	1.3673	0.0013516	2.6795	0.0026487	988.983162633728	15.996	0.16846	15.996	15.925	16.094	0	186	37	1.1997861197946	0.0238728485495119	1.1997861197946	483.9043960635	0	9.62852975965802						336	20	3	NaN	NaN	NaN	1.2801E-06	1	31198	70.552	69.876	1	94427			20428	3459;3460	17234	17729	20428	20428		
VGDAIPAVEVFEGEPGNK	18	Unmodified	_VGDAIPAVEVFEGEPGNK_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.459798	1826.90504	2.033	0.0018591	0.63675	0.00058229	2.6697	0.0024414	914.460676233726	14.249	0.27485	14.249	14.107	14.382	0	177	94	1.2057522832638	0.0617012268083816	1.2057522832638	486.585625563361	0	24.8997496926278						1767	32	4	NaN	NaN	NaN	0.0026085	1	27896	53.051	46.195	1	407480			20429	895	17235	17730	20429	20429		
VGDAIPAVEVFEGEPGNK	18	Unmodified	_VGDAIPAVEVFEGEPGNK_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	914.459798	1826.90504	2.526	0.0023099	0.70281	0.00064269	3.2288	0.0029526	914.461206345815	14.249	0.57635	14.249	14.001	14.577	0	297	94	1.12600091227925	0.0619561804566018	1.12600091227925	454.401675715893	0	25.0026371323704						2580	66	4	NaN	NaN	NaN	4.7362E-05	1	27897	91.032	88.317	1	1702700			20430	895	17235	17730	20430	20430		
VGDDPAVWQLK	11	Unmodified	_VGDDPAVWQLK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.322045	1226.62954	0.73776	0.00045322	-0.24171	-0.00014849	0.49605	0.00030473	614.321948828084	10.738	0.12415	10.738	10.693	10.817	0	624	49	0.906433495720521	0.0324646425332216	0.906433495720521	367.140026684686	0	13.1494144713633						348	15	3	NaN	NaN	NaN	5.564E-05	1	10197	102.55	93.783	1	115530			20431	3406	17236	17731	20431	20431		
VGDDVEFEVSSDRR	14	Unmodified	_VGDDVEFEVSSDRR_			0	0	1	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	537.253269	1608.73798	-0.11009	-5.9147E-05	0.33402	0.00017946	0.22393	0.00012031	537.253370222701	6.7289	0.088661	6.7289	6.6934	6.7821	0	723	28	0.839303037468863	0.0183515663260597	0.839303037468863	508.571664099716	0	11.1200439038405						165	11	3	NaN	NaN	NaN	0.0018485	1	21864	48.701	40.699	1	37602			20432	344	17237	17732	20432	20432		
VGDGDLSAEEIPENEVSLR	19	Unmodified	_VGDGDLSAEEIPENEVSLR_			0	0	0	Q14684	Q14684	Q14684	RRP1B	Ribosomal RNA processing protein 1 homolog B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.98965	2027.96474	1.048	0.0010637	0.43492	0.00044144	1.4829	0.0015051	1015.49176916791	11.917	0.097562	11.917	11.864	11.961	0	228	49	1.17191150690002	0.0318873497826937	1.17191150690002	472.575607957297	0	12.8586361862467						446	12	4	NaN	NaN	NaN	0.0022308	1	32108	44.045	34.889	1	114780			20433	1765	17238	17733	20433	20433		
VGDQILLAIK	10	Unmodified	_VGDQILLAIK_			0	0	0	Q6P1L8	Q6P1L8	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.334424	1068.6543	0.37475	0.00020062	-1.2151	-0.00065051	-0.84039	-0.00044989	535.333808517918	12.786	0.12413	12.786	12.742	12.866	0	684	31	0.86578508874114	0.0203524260142245	0.86578508874114	351.252119091349	0	8.25705230906755						234	15	3	NaN	NaN	NaN	0.0068966	1	5936	58.916	43.417	1	78980			20434	2058	17239	17734	20434	20434		
VGDQVWLFIDEPR	13	Unmodified	_VGDQVWLFIDEPR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	787.404098	1572.79364	0.82159	0.00064692	0.94847	0.00074683	1.7701	0.0013938	787.404588134709	16.972	0.21284	16.972	16.901	17.114	0	366	46	1.07994477139643	0.0300904538229143	1.07994477139643	436.345675525497	0	12.1578804286916						833	25	5	NaN	NaN	NaN	4.1279E-08	1	20754	151.52	112.23	1	308340			20435	1136	17240	17735	20435	20435		
VGDVQGQESESQLPTK	16	Unmodified	_VGDVQGQESESQLPTK_			0	0	0	Q96JH7	Q96JH7	Q96JH7	VCPIP1	Deubiquitinating protein VCIP135	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	851.41813	1700.82171	2.017	0.0017173	-2.021	-0.0017207	-0.0039145	-3.3329E-06	851.416785801554	5.2036	0.070939	5.2036	5.177	5.2479	0	390	28	1.06389100039157	0.0180692111077525	1.06389100039157	429.576727483236	0	7.29596600875016						106	9	2	NaN	NaN	NaN	0.0047702	1	24516	44.571	38.543	1	23597			20436	2568	17241	17736	20436	20436		
VGDVYIPR	8	Unmodified	_VGDVYIPR_			0	0	0	Q01130;Q9BRL6	Q01130	Q01130	SRSF2;SRSF8	Serine/arginine-rich splicing factor 2;Serine/arginine-rich splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.75581	917.497067	-0.81617	-0.00037524	0.38678	0.00017783	-0.42938	-0.00019741	459.756311194503	7.1811	0.31918	7.1811	7.1191	7.4383	8.8818E-16	774	73	0.804600385996946	0.0490363080759948	0.804600385996946	327.112650957879	0	19.9358551239706						1087	37	4	NaN	NaN	NaN	0.00022203	1	2656	97.033	40.942	1	633390			20437	1514	17242	17737	20437	20437		
VGDYVYFENSSSNPYLVR	18	Unmodified	_VGDYVYFENSSSNPYLVR_			0	0	0	O94776	O94776	O94776	MTA2	Metastasis-associated protein MTA2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.99982	2107.98508	2.493	0.0026301	0.1475	0.00015561	2.6405	0.0027858	1055.0010456471	13.567	0.097546	13.567	13.513	13.611	0	138	58	1.23157729878518	0.0377235597293333	1.23157729878518	496.507751473586	0	15.208172347173						409	12	4	NaN	NaN	NaN	0.0010643	1	33433	49.487	39.973	1	87349			20438	385	17243	17738	20438	20438		
VGEAQETTEEFNR	13	Unmodified	_VGEAQETTEEFNR_			0	0	0	O95273	O95273	O95273	CCNDBP1	Cyclin-D1-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.344434	1508.67432	1.5379	0.0011617	-1.7276	-0.0013049	-0.18968	-0.00014327	755.345662300919	5.2923	0.1597	5.2923	5.2657	5.4254	0	468	25	1.01159370163332	0.0161203791387572	1.01159370163332	408.880388057058	0	6.51576504207122						202	19	3	NaN	NaN	NaN	0.00034162	1	18746	86.243	57.915	1	36890			20439	414	17244	17739	20439	20439		
VGEATETALTCLVEK	15	Unmodified	_VGEATETALTCLVEK_			0	0	0	P16615;Q93084	P16615	P16615	ATP2A2;ATP2A3	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.911095	1619.80764	2.4594	0.0019943	-0.89625	-0.00072678	1.5631	0.0012675	810.91185551894	12.538	0.22169	12.538	12.467	12.689	0	357	76	1.08596037261705	0.0500955197846764	1.08596037261705	438.665086517143	0	20.2356882208404						1084	26	5	NaN	NaN	NaN	5.9425E-12	1	22183	175.54	137.79	1	615630			20440	730	17245	17740	20440	20440		
VGEEFEEQTVDGR	13	Unmodified	_VGEEFEEQTVDGR_			0	0	0	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.838985	1493.66342	1.1386	0.00085146	1.4349	0.001073	2.5734	0.0019245	747.839148828955	7.0303	0.10649	7.0303	6.9949	7.1014	0	456	37	1.01965166402748	0.0241705518393689	1.01965166402748	412.175009056478	0	9.77049101645315						165	13	2	NaN	NaN	NaN	0.0026227	1	18345	66.953	56.166	1	46621			20441	887	17246	17741	20441	20441		
VGEEFEEQTVDGRPCK	16	Unmodified	_VGEEFEEQTVDGRPCK_			0	0	1	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.428172	1878.84179	3.2804	0.003085	-1.9331	-0.0018179	1.3473	0.0012671	940.426406136182	6.0283	0.14187	6.0283	5.9929	6.1347	0	261	58	1.14997238118939	0.0379104952093297	1.14997238118939	463.978786168369	0	15.2957286957397						623	17	5	NaN	NaN	NaN	1.0526E-10	1	29127	142.08	132.82	1	209760			20442	887	17247	17742	20442	20442		
VGEEFEEQTVDGRPCK	16	Unmodified	_VGEEFEEQTVDGRPCK_			0	0	1	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	627.287874	1878.84179	1.5951	0.0010006	0.49118	0.00030811	2.0863	0.0013087	627.287905714158	6.0372	0.12414	6.0372	5.9929	6.117	0	642	40	0.894250814548268	0.0264122944165538	0.894250814548268	541.202263568856	0	15.9847699233093						381	15	5	NaN	NaN	NaN	3.0621E-06	1	29128	108.5	100.53	1	128720			20443	887	17247	17742	20443	20443		
VGEFFSHVVWK	11	Unmodified	_VGEFFSHVVWK_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	445.567912	1333.68191	-1.2317	-0.00054882	-0.39754	-0.00017713	-1.6293	-0.00072595	445.567695698775	12.706	0.08868	12.706	12.671	12.76	0	759	25	0.814815566123307	0.0163386061083168	0.814815566123307	494.600662247014	0	9.9176865751528						185	11	3	NaN	NaN	NaN	0.058418	1	13397	21.088	17.48	1	44864			20444	3043	17248	17743	20444	20444		
VGEFSGANK	9	Unmodified	_VGEFSGANK_			0	0	0	P10599	P10599	P10599	TXN	Thioredoxin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.727249	907.439946	0.22532	0.00010246	0.3398	0.00015452	0.56511	0.00025697	454.727690243173	2.7917	0.58524	2.7917	2.7562	3.3415	0	810	55	0.78005493425781	0.0368438240198924	0.78005493425781	317.185463208832	0	14.9814133273233						1047	67	4	NaN	NaN	NaN	9.3686E-06	1	2454	101.41	56.992	1	609790			20445	628	17249	17744	20445	20445		
VGEGPGVCWLAPEQTAGK	18	Unmodified	_VGEGPGVCWLAPEQTAGK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.453993	1854.89343	1.9276	0.0017897	-2.0679	-0.0019199	-0.14028	-0.00013025	928.452107378701	12.139	0.15076	12.139	12.077	12.227	0	306	97	1.12000185836644	0.0639679733859324	1.12000185836644	451.929356312983	0	25.8115688121403						1359	18	5	NaN	NaN	NaN	6.7929E-14	1	28595	137.4	120.64	1	463590			20446	2892	17250	17745	20446	20446		
VGENADSQIK	10	Unmodified	_VGENADSQIK_			0	0	0	P07305	P07305	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.767103	1059.51965	1.5085	0.00080067	-0.53554	-0.00028425	0.97298	0.00051643	530.767178651904	2.6764	0.15961	2.6764	2.6498	2.8094	0	699	25	0.85560534332665	0.0162932496974951	0.85560534332665	347.160235337807	0	6.61095497301096						179	19	2	NaN	NaN	NaN	0.031247	1	5709	26.947	16.868	1	43332			20447	555	17251	17746	20447	20447		
VGEQAQVVIIDMNDPSNPIR	20	Unmodified	_VGEQAQVVIIDMNDPSNPIR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.05988	2194.10522	1.188	0.0013045	-2.0157	-0.0022134	-0.82773	-0.0009089	1098.55931989165	14.639	0.22169	14.639	14.542	14.764	-1.7764E-15	135	70	1.23356193185193	0.0456403307819657	1.23356193185193	497.180081081804	0	18.3950742746346						830	26	4	NaN	NaN	NaN	2.9557E-05	1	34613	65.421	61.781	1	215150			20448	1503	17252	17747	20448	20448		
VGESVFHTTR	10	Unmodified	_VGESVFHTTR_			0	0	0	Q9P0J0	Q9P0J0	Q9P0J0	NDUFA13	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	378.196367	1131.56727	-0.6487	-0.00024534	0.45125	0.00017066	-0.19745	-7.4676E-05	378.196445159418	4.3968	0.11528	4.3968	4.3524	4.4677	0	840	25	0.759569036796863	0.0164001382999108	0.759569036796863	461.907704647538	0	9.97322148617275						156	14	3	NaN	NaN	NaN	0.0054627	1	7576	48.157	34.51	1	38357			20449	3145	17253	17748	20449	20449		
VGETIIDLENR	11	Unmodified	_VGETIIDLENR_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.835517	1257.65648	1.3997	0.0008816	-1.6141	-0.0010166	-0.21438	-0.00013503	629.835574869899	10.755	0.14187	10.755	10.693	10.835	0	549	40	0.957085760909907	0.0262917911447993	0.957085760909907	387.549685023734	0	10.6462511438783						291	17	3	NaN	NaN	NaN	0.00075837	1	11145	68.49	45.437	1	111040			20450	3136	17254	17749	20450	20450		
VGEVCHITCK	10	Unmodified	_VGEVCHITCK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.786458	1201.55836	2.0489	0.001233	-2.2218	-0.001337	-0.17284	-0.00010401	601.785420391578	3.0666	0.17731	3.0666	3.0311	3.2084	0	600	52	0.922661313351899	0.0344769526882287	0.922661313351899	373.799676081964	0	13.9677187724873						349	21	4	NaN	NaN	NaN	0.00089278	1	9500	61.48	47.485	1	78924			20451	1530	17255	17750	20451	20451		
VGEVCHITCK	10	Unmodified	_VGEVCHITCK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.526731	1201.55836	-0.51829	-0.00020811	0.45721	0.00018358	-0.061085	-2.4527E-05	401.527126013327	3.0666	0.22167	3.0666	3.0311	3.2528	0	855	25	0.749315378969369	0.0164115712895311	0.749315378969369	455.353177211444	0	9.97318530950048						386	26	4	NaN	NaN	NaN	0.017725	1	9501	39.01	9.7003	1	108270			20452	1530	17255	17750	20452	20452		
VGEVCHITCKPEYAYGSAGSPPK	23	Unmodified	_VGEVCHITCKPEYAYGSAGSPPK_			0	0	1	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.394636	2506.16208	2.3485	0.0019643	0.53607	0.00044836	2.8846	0.0024126	836.395939227366	6.3121	0.079807	6.3121	6.2767	6.3565	0	360	19	1.08395544855938	0.012028715983686	1.08395544855938	654.807942835486	0	7.26644141943098						106	10	3	NaN	NaN	NaN	1.2453E-09	1	36855	75.312	74.615	1	16083			20453	1530	17256	17751	20453	20453		
VGEVIVTK	8	Unmodified	_VGEVIVTK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	422.760561	843.506569	-0.16067	-6.7927E-05	1.2766	0.00053968	1.1159	0.00047175	422.761204566933	4.5918	0.24836	4.5918	4.5475	4.7958	0	819	49	0.773912161060781	0.0327683119781043	0.773912161060781	315.043005688708	0	13.339275458312						924	29	4	NaN	NaN	NaN	0.010479	1	1474	49.96	11.638	1	1094400			20454	635	17257	17752	20454	20454		
VGEVTYVELLMDAEGK	16	Unmodified	_VGEVTYVELLMDAEGK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.939853	1751.86515	1.6721	0.0014663	0.041119	3.6059E-05	1.7132	0.0015024	876.94027074141	17.982	0.1862	17.982	17.912	18.098	0	297	61	1.12600091227925	0.0400019691286564	1.12600091227925	454.548300892992	0	16.1481459752986						879	22	5	NaN	NaN	NaN	3.1864E-09	1	25953	112.95	96.82	1	406080			20455	1206	17258	17753	20455	20455		
VGEVTYVELLMDAEGK	16	Unmodified	_VGEVTYVELLMDAEGK_			0	0	0	P52272	P52272	P52272	HNRNPM	Heterogeneous nuclear ribonucleoprotein M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.939853	1751.86515	0.87675	0.00076886	1.3821	0.001212	2.2589	0.0019809	876.941059537998	17.982	0.044332	17.982	17.956	18	0	201	25	1.18983705239708	0.0159217872807365	1.18983705239708	480.317909965934	0	6.42736715434995						103	6	3	NaN	NaN	NaN	0.00014365	1	25954	86.838	78.873	1	16491			20456	1206	17258	17753	20456	20456		
VGFQYEGTYK	10	Unmodified	_VGFQYEGTYK_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.287671	1190.56079	1.5401	0.00091837	1.7477	0.0010422	3.2879	0.0019605	596.288613344542	7.3674	0.25707	7.3674	7.3231	7.5801	0	606	64	0.918606045818476	0.0425655822640078	0.918606045818476	372.195769131567	0	17.2464896147831						449	30	2	NaN	NaN	NaN	0.0028752	1	9172	69.716	34.784	1	485410			20457	653	17259	17754	20457	20457		
VGFVTYNK	8	Unmodified	_VGFVTYNK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.25036	926.486168	-0.95592	-0.00044379	-0.72958	-0.00033871	-1.6855	-0.0007825	464.24992467985	6.2146	0.12419	6.2146	6.1791	6.3033	0	762	25	0.812773098473386	0.0163431521630455	0.812773098473386	330.388003668948	0	6.6434056773636						131	15	2	NaN	NaN	NaN	0.068587	1	2807	21.275	12.512	1	39707			20458	1247	17260	17755	20458	20458		
VGGDVPETNYLFMGDFVDR	19	Unmodified	_VGGDVPETNYLFMGDFVDR_			0	0	0	P60510	P60510	P60510	PPP4C	Serine/threonine-protein phosphatase 4 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.99368	2129.97281	0.88688	0.00094541	0.86161	0.00091847	1.7485	0.0018639	1066.49621267007	17.637	0.097524	17.637	17.592	17.69	0	156	52	1.21966378336455	0.0337758120573306	1.21966378336455	491.671617858634	0	13.6157262232599						453	12	4	NaN	NaN	NaN	0.002339	1	33736	44.16	36.954	1	89421			20459	1306	17261	17756	20459	20459		
VGGGGTAGGDRWEGEDEDEDVK	22	Unmodified	_VGGGGTAGGDRWEGEDEDEDVK_			0	0	1	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	745.652597	2233.93596	1.4355	0.0010704	1.3203	0.00098447	2.7558	0.0020549	745.987849186124	5.1593	0.088686	5.1593	5.1327	5.2213	0	621	55	0.908462957275599	0.0365227258333037	0.908462957275599	549.163039004239	0	22.0778744479409						337	11	4	NaN	NaN	NaN	0.007856	1	35021	43.518	43.419	1	88375			20460	363	17262	17757	20460	20460		
VGGHAAEYGAEALER	15	Unmodified	_VGGHAAEYGAEALER_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.58295	1528.72702	0.19702	0.00010059	0.856	0.00043706	1.053	0.00053765	510.583225122135	5.6471	0.21285	5.6471	5.6115	5.8243	0	738	118	0.829104889055312	0.0796896348374553	0.829104889055312	502.616251710994	0	48.3090934463752						911	25	5	NaN	NaN	NaN	0.00083548	1	19376	101.45	17.136	1	384180		+	20461	25	17263	17758	20461	20461		
VGGHAAEYGAEALER	15	Unmodified	_VGGHAAEYGAEALER_			0	0	0	CON__P01966	CON__P01966	CON__P01966			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.370786	1528.72702	3.3397	0.0025561	-0.24241	-0.00018553	3.0972	0.0023705	765.370524263379	5.6559	0.31927	5.6559	5.6115	5.9307	0	426	67	1.03977710643793	0.0442637694346084	1.03977710643793	420.221833664002	0	17.8890285634522						1165	37	5	NaN	NaN	NaN	9.2443E-12	1	19377	149.58	32.377	1	980750		+	20462	25	17263	17758	20462	20462		
VGGTSDVEVNEK	12	Unmodified	_VGGTSDVEVNEK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.301507	1232.58846	2.6942	0.0016631	0.062617	3.8654E-05	2.7568	0.0017018	617.301503240366	3.4479	0.34592	3.4479	3.3592	3.7051	0	588	106	0.93076847747433	0.0710214112567196	0.93076847747433	376.976336295382	0	28.7648239729135						1396	40	5	NaN	NaN	NaN	3.9809E-11	1	10391	159.11	118.61	1	3051900			20463	635	17264	17759	20463	20463		
VGGYILGEFGNLIAGDPR	18	Unmodified	_VGGYILGEFGNLIAGDPR_			0	0	0	O95782;O94973	O95782;O94973	O95782	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.48615	1846.95775	1.518	0.0014033	-0.75257	-0.00069574	0.76538	0.00070759	924.485486132458	18.931	0.14187	18.931	18.878	19.02	0	264	79	1.14797626962532	0.0519167880195952	1.14797626962532	463.232014897962	0	20.9494908193501						631	17	5	NaN	NaN	NaN	7.0793E-14	1	28415	120.75	110.42	1	179480			20464	452;399	17265	17760	20464	20464		
VGGYILGEFGNLIAGDPR	18	Unmodified	_VGGYILGEFGNLIAGDPR_			0	0	0	O95782;O94973	O95782;O94973	O95782	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.659859	1846.95775	-0.87737	-0.00054104	2.3194	0.0014303	1.442	0.00088925	616.99517393527	18.94	0.035457	18.94	18.914	18.949	0	651	13	0.888155670855968	0.00812854973759669	0.888155670855968	537.581399671833	0	4.92003517922478						41	5	2	NaN	NaN	NaN	0.023662	1	28416	12.851	10.867	1	9147.3			20465	452;399	17265	17760	20465	20465		
VGIDTPDIDIHGPEGK	16	Unmodified	_VGIDTPDIDIHGPEGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	554.949298	1661.82606	-0.23423	-0.00012999	0.037988	2.1081E-05	-0.19625	-0.00010891	554.949342134513	10.25	0.22169	10.25	10.143	10.365	0	705	40	0.851531465363931	0.0264857303381943	0.851531465363931	515.840860895516	0	16.0445297617529						602	26	4	NaN	NaN	NaN	0.00011626	1	23390	83.214	67.598	1	249070			20466	1584	17266	17761	20466	20466		
VGIGAFPTEQDNEIGELLQTR	21	Unmodified	_VGIGAFPTEQDNEIGELLQTR_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.08187	2286.14919	0.79219	0.00090633	-1.0027	-0.0011472	-0.21049	-0.00024082	1144.58260839985	17.672	0.17733	17.672	17.601	17.779	0	99	82	1.25735632164274	0.0534824258545257	1.25735632164274	506.641875036193	0	21.5503243193779						1320	21	5	NaN	NaN	NaN	0.00040756	1	35526	43.904	32.224	1	320940			20467	911	17267	17762	20467	20467		
VGIGAFPTEQDNEIGELLQTR	21	Unmodified	_VGIGAFPTEQDNEIGELLQTR_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.057006	2286.14919	0.88807	0.00067765	-0.97094	-0.00074088	-0.082868	-6.3233E-05	763.390421189744	17.681	0.133	17.681	17.619	17.752	0	480	28	1.00353128488872	0.0181441995838212	1.00353128488872	606.545984712613	0	10.9665653369356						311	16	4	NaN	NaN	NaN	0.00087132	1	35527	57.279	52.462	1	68096			20468	911	17267	17762	20468	20468		
VGINYQPPTVVPGGDLAK	18	Unmodified	_VGINYQPPTVVPGGDLAK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.996351	1823.97815	1.3345	0.0012184	-0.203	-0.00018534	1.1315	0.001033	912.996638652914	11.837	0.12416	11.837	11.766	11.89	0	258	28	1.15196821829984	0.0179625356920501	1.15196821829984	464.886498310539	0	7.24893290110009						227	15	4	NaN	NaN	NaN	0.00014416	1	27836	66.485	64.643	1	50101			20469	1447;2696;1448	17268	17763	20469	20469		
VGINYQPPTVVPGGDLAK	18	Unmodified	_VGINYQPPTVVPGGDLAK_			0	0	0	P68363;P68366;Q9BQE3	P68363;P68366;Q9BQE3	Q9BQE3	TUBA1B;TUBA4A;TUBA1C	Tubulin alpha-1B chain;Tubulin alpha-4A chain;Tubulin alpha-1C chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.996351	1823.97815	2.417	0.0022067	2.6512	0.0024205	5.0682	0.0046272	913.500247731435	12.547	0.51432	12.547	12.227	12.742	0	288	157	1.13199748998575	0.103790996692417	1.13199748998575	456.827132475217	0	41.8857319165421						3138	59	6	NaN	NaN	NaN	4.694E-19	1	27837	185.57	145.04	1	6665200			20470	1447;2696;1448	17268	17763	20470	20470		
VGIPQENADHDDFDANQLLNK	21	Unmodified	_VGIPQENADHDDFDANQLLNK_			0	0	0	P98082	P98082	P98082	DAB2	Disabled homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.040015	2352.09822	1.4251	0.0011188	0.87578	0.00068752	2.3009	0.0018063	785.376147513346	11.42	0.16851	11.42	11.376	11.545	0	573	136	0.940896116921038	0.090959881543456	0.940896116921038	568.592286194376	0	54.9679035428558						1252	20	6	NaN	NaN	NaN	2.0704E-16	1	36058	133.34	131.24	1	616740			20471	1489	17269	17764	20471	20471		
VGKDELFALEQSCAQVVLQAANER	24	Unmodified	_VGKDELFALEQSCAQVVLQAANER_			0	0	1	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	892.453431	2674.33846	0.1204	0.00010745	-0.35573	-0.00031748	-0.23534	-0.00021003	892.787367307364	16.856	0.079808	16.856	16.812	16.892	0	501	43	0.98941132619024	0.0282457786988155	0.98941132619024	597.487376091736	0	17.0571083569528						309	10	4	NaN	NaN	NaN	1.8461E-06	1	37526	52.481	49.414	1	67283			20472	1898	17270	17765	20472	20472		
VGLADLHPDVFATAPR	16	Unmodified	_VGLADLHPDVFATAPR_			0	0	0	Q9BYD3	Q9BYD3	Q9BYD3	MRPL4	39S ribosomal protein L4, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.949204	1677.88385	1.9818	0.0016646	0.76479	0.00064239	2.7466	0.002307	839.950026628545	13.46	0.097518	13.46	13.425	13.522	0	267	43	1.14597988355104	0.0279513333515433	1.14597988355104	462.773601277122	0	11.2874051117801						279	12	3	NaN	NaN	NaN	0.0002118	1	23863	65.408	56.146	1	66269			20473	2799	17271	17766	20473	20473		
VGLGICYDMR	10	Unmodified	_VGLGICYDMR_			0	0	0	Q9NQR4	Q9NQR4	Q9NQR4	NIT2	Omega-amidase NIT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.283551	1182.55255	1.3493	0.00079915	2.3263	0.0013778	3.6755	0.002177	592.284489067898	10.959	0.15075	10.959	10.915	11.066	0	576	28	0.938871150116794	0.0182247029861181	0.938871150116794	380.436180969253	0	7.38475817738703						256	18	4	NaN	NaN	NaN	0.032281	1	8935	25.857	18.21	1	65754			20474	3001	17272	17767	20474	20474		
VGLGLGYLELPQINYK	16	Unmodified	_VGLGLGYLELPQINYK_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	888.998362	1775.98217	1.7374	0.0015445	-0.19832	-0.00017631	1.539	0.0013682	889.499552111252	18.488	0.11533	18.488	18.426	18.541	0	267	37	1.14597988355104	0.0239582842572883	1.14597988355104	462.564160924593	0	9.67053943418711						307	14	3	NaN	NaN	NaN	0.023805	1	26581	54.27	51.969	1	95435			20475	1621	17273	17768	20475	20475		
VGLIGSCTNSSYEDMGR	17	Unmodified	_VGLIGSCTNSSYEDMGR_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.408925	1844.8033	3.1174	0.0028786	-1.2945	-0.0011953	1.8229	0.0016833	923.407903793884	9.7977	0.12414	9.7977	9.7622	9.8864	0	303	40	1.12200181823275	0.0259994834338622	1.12200181823275	452.754733187026	0	10.4914172096795						388	15	4	NaN	NaN	NaN	3.5116E-05	1	28340	75.012	74.393	1	116540			20476	2674	17274	17769	20476	20476		
VGLNWLALVHK	11	Unmodified	_VGLNWLALVHK_			0	0	0	Q9H4L7	Q9H4L7	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	417.252036	1248.73428	-2.4208	-0.0010101	0.33446	0.00013955	-2.0864	-0.00087055	417.252417327186	15.047	0.079727	15.047	15.021	15.101	0	840	25	0.759569036796863	0.016402423941871	0.759569036796863	461.386522186017	0	9.96335681332471						153	10	3	NaN	NaN	NaN	0.028585	1	10892	43.734	30.46	1	45343			20477	2896	17275	17770	20477	20477		
VGLQVVAVK	9	Unmodified	_VGLQVVAVK_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.797478	911.580402	-0.70665	-0.0003228	-0.20725	-9.467E-05	-0.9139	-0.00041747	456.797425521201	8.3608	0.32813	8.3608	8.3076	8.6357	0	774	73	0.804600385996946	0.0490226670489013	0.804600385996946	327.143968297135	0	19.932217426189						1087	38	3	NaN	NaN	NaN	8.7455E-05	1	2536	113.14	59.457	1	1804500			20478	635	17276	17771	20478	20478		
VGLTNYAAAYCTGLLLAR	18	Unmodified	_VGLTNYAAAYCTGLLLAR_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.008935	1926.00332	1.4364	0.0013847	-1.3706	-0.0013212	0.065871	6.35E-05	964.509253531458	16.466	0.19507	16.466	16.413	16.608	0	222	61	1.17589687683038	0.039826354451779	1.17589687683038	474.353363646056	0	16.065834996419						645	23	3	NaN	NaN	NaN	3.6277E-10	1	30194	95.345	89.958	1	296360			20479	1086	17277	17772	20479	20479		
VGLTSEILNSFEHEFLSK	18	Unmodified	_VGLTSEILNSFEHEFLSK_			0	0	0	Q14181	Q14181	Q14181	POLA2	DNA polymerase alpha subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.021234	2049.04187	0.099075	6.7769E-05	-0.14276	-9.7652E-05	-0.043687	-2.9883E-05	684.021652376012	19.898	0.035468	19.898	19.889	19.924	0	570	25	0.942920803299286	0.0161986138950868	0.942920803299286	570.310212499806	0	9.79746644721877						75	5	4	NaN	NaN	NaN	8.5058E-05	1	32533	51.829	39.659	1	17606			20480	1734	17278	17773	20480	20480		
VGMIPVPYVEK	11	Unmodified	_VGMIPVPYVEK_			0	0	0	P46109	P46109	P46109	CRKL	Crk-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.341392	1230.66823	1.7517	0.0010796	0.21212	0.00013074	1.9638	0.0012104	616.339463286584	12.893	0.19509	12.893	12.76	12.955	0	552	22	0.955063035883597	0.0141551569579264	0.955063035883597	386.822710487192	0	5.73316731577927						202	23	2	NaN	NaN	NaN	0.022169	1	10335	39.039	29.525	1	64499			20481	1079	17279	17774	20481	20481		
VGMVETNSQDRPVDDVK	17	Unmodified	_VGMVETNSQDRPVDDVK_			0	0	1	Q9Y3C6	Q9Y3C6	Q9Y3C6	PPIL1	Peptidyl-prolyl cis-trans isomerase-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.957097	1887.89964	2.6511	0.0025052	-3.4756	-0.0032843	-0.8245	-0.00077911	945.45605932386	5.5405	0.088663	5.5405	5.5228	5.6115	0	222	64	1.17589687683038	0.0418607827717516	1.17589687683038	474.421849726825	0	16.8889554729652						221	11	2	NaN	NaN	NaN	0.01294	1	29323	50.641	48.799	1	46518			20482	3384	17280	17775	20482	20482		
VGNIIDTMITDAFLK	15	Unmodified	_VGNIIDTMITDAFLK_			0	0	0	Q9Y3Z3	Q9Y3Z3	Q9Y3Z3	SAMHD1	Deoxynucleoside triphosphate triphosphohydrolase SAMHD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.942198	1649.86984	1.5912	0.0013142	-1.2106	-0.0009999	0.38054	0.0003143	826.443214229202	20.066	0.044346	20.066	20.057	20.102	0	339	40	1.09798411722691	0.0260532455206195	1.09798411722691	443.453453285264	0	10.5223759744239						102	6	3	NaN	NaN	NaN	0.048343	1	23050	28.228	27.176	1	28378			20483	3402	17281	17776	20483	20483		
VGNLGLATSFFNER	14	Unmodified	_VGNLGLATSFFNER_			0	0	0	O00571	O00571	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.893897	1523.77324	1.6893	0.0012888	-0.080237	-6.1212E-05	1.6091	0.0012276	762.89405985767	15.384	0.22179	15.384	15.278	15.5	0	399	61	1.0578662689527	0.0401565865684175	1.0578662689527	427.544969801728	0	16.2296001825749						671	26	4	NaN	NaN	NaN	7.9555E-08	1	19238	94.791	78.139	1	330560			20484	93	17282	17777	20484	20484		
VGNLTVVGK	9	Unmodified	_VGNLTVVGK_			0	0	0	P17174	P17174	P17174	GOT1	Aspartate aminotransferase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.77146	885.528367	-2.0166	-0.0008949	0.86723	0.00038485	-1.1493	-0.00051005	443.772014211312	5.443	0.13302	5.443	5.3987	5.5317	0	801	31	0.78619514174348	0.0204630863651483	0.78619514174348	319.800084847061	0	8.32375628943066						207	16	3	NaN	NaN	NaN	0.0044558	1	2087	69.716	51.313	1	74472			20485	736	17283	17778	20485	20485		
VGNPWDPNVLYGPLHTK	17	Unmodified	_VGNPWDPNVLYGPLHTK_			0	0	0	P49419	P49419	P49419	ALDH7A1	Alpha-aminoadipic semialdehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.331854	1905.97373	1.4533	0.00092481	0.09438	6.0057E-05	1.5477	0.00098487	636.332152454905	13.886	0.22167	13.886	13.788	14.01	0	555	58	0.953040030838688	0.0384477564572652	0.953040030838688	576.721485812266	0	23.2662286081195						763	26	4	NaN	NaN	NaN	0.023508	1	29727	48.363	41.508	1	252580			20486	1132	17284	17779	20486	20486		
VGPATPSAQVGK	12	Unmodified	_VGPATPSAQVGK_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.308938	1110.60332	1.7224	0.00095819	-1.4239	-0.00079214	0.29849	0.00016605	556.309127703889	4.042	0.15964	4.042	3.9622	4.1219	0	654	40	0.886123392477847	0.0264196242559493	0.886123392477847	359.330601549551	0	10.7133832118541						221	19	2	NaN	NaN	NaN	0.00030831	1	7008	92.732	76.274	1	68983			20487	1666	17285	17780	20487	20487		
VGPGPALMLR	10	Unmodified	_VGPGPALMLR_			0	0	0	O15067	O15067	O15067	PFAS	Phosphoribosylformylglycinamidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.794412	1009.57427	0.070702	3.576E-05	0.09022	4.5633E-05	0.16092	8.1393E-05	505.794589471864	10.028	0.18619	10.028	9.9573	10.143	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	353.165954522787	0	7.43532914820622						301	22	3	NaN	NaN	NaN	0.0075583	1	4504	56.014	41.479	1	88664			20488	141	17286	17781	20488	20488		
VGQAMASTEEK	11	Unmodified	_VGQAMASTEEK_			0	0	0	P46977	P46977	P46977	STT3A	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.774071	1149.53359	1.2348	0.00071095	1.0607	0.00061071	2.2955	0.0013217	575.776090184996	2.4902	0.1685	2.4902	2.4547	2.6232	0	663	28	0.880024865079826	0.018298122879973	0.880024865079826	356.709408841083	0	7.41696383183967						167	20	3	NaN	NaN	NaN	0.00052911	1	8049	94.66	59.707	1	43949			20489	1097	17287	17782	20489	20489		
VGQDPVLR	8	Unmodified	_VGQDPVLR_			0	0	0	Q04837	Q04837	Q04837	SSBP1	Single-stranded DNA-binding protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.253434	882.492316	-0.72729	-0.00032165	1.169	0.00051699	0.4417	0.00019534	442.254019684274	4.2371	0.42559	4.2371	4.1219	4.5475	0	777	37	0.802556497112065	0.0245283773242136	0.802556497112065	326.472523546664	0	9.97791591290627						737	49	5	NaN	NaN	NaN	0.0025753	1	2044	75.243	61.691	1	446590			20490	1546	17288	17783	20490	20490		
VGQISFDLPR	10	Unmodified	_VGQISFDLPR_			0	0	0	Q9Y4W6	Q9Y4W6	Q9Y4W6	AFG3L2	AFG3-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.31148	1130.60841	0.6648	0.00037649	1.699	0.00096215	2.3638	0.0013386	566.312753826869	12.219	0.23944	12.219	12.157	12.396	0	588	64	0.93076847747433	0.042577380990271	0.93076847747433	377.352678562553	0	17.2617456990534						433	28	3	NaN	NaN	NaN	0.0011074	1	7551	88.181	64.605	1	103490			20491	3416	17289	17784	20491	20491		
VGQLSEGAIAAIMQK	15	Unmodified	_VGQLSEGAIAAIMQK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.413608	1514.81266	1.4195	0.0010766	-0.98993	-0.00075077	0.42956	0.00032578	758.413495761908	13.957	0.079796	13.957	13.903	13.983	0	393	25	1.0618830335572	0.0160648436588446	1.0618830335572	429.191234034838	0	6.49307866933242						97	10	2	NaN	NaN	NaN	0.00020224	1	18980	81.48	75.452	1	47830			20492	865	17290	17785	20492	20492		
VGQLSEGAIAAIMQK	15	Unmodified	_VGQLSEGAIAAIMQK_			0	0	0	P27694	P27694	P27694	RPA1	Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.413608	1514.81266	1.8664	0.0014155	0.20283	0.00015383	2.0693	0.0015694	758.413997760713	13.957	0.079793	13.957	13.921	14.001	0	276	70	1.13998907770044	0.0459801174919154	1.13998907770044	460.760082129069	0	18.5842155212703						426	10	4	NaN	NaN	NaN	3.2169E-06	1	18982	115.04	109.54	1	108570			20493	865	17290	17785	20493	20493		
VGQYLNCIVEK	11	Unmodified	_VGQYLNCIVEK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.842287	1321.67002	1.0458	0.00069213	-0.82688	-0.00054727	0.21889	0.00014487	661.84182644107	9.2303	0.133	9.2303	9.1504	9.2834	0	522	28	0.975277694896658	0.0181843844613631	0.975277694896658	394.708289376022	0	7.35947035563146						189	16	2	NaN	NaN	NaN	0.00083605	1	13035	62.271	52.757	1	81103			20494	1766	17291	17786	20494	20494		
VGSAADIPINISETDLSLLTATVVPPSGR	29	Unmodified	_VGSAADIPINISETDLSLLTATVVPPSGR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	965.188749	2892.54442	1.2468	0.0012034	0.73508	0.00070949	1.9819	0.0019129	965.523590434561	20.04	0.053217	20.04	20.022	20.075	0	210	34	1.18386433251387	0.021902983606175	1.18386433251387	714.634996259268	0	13.2216489487677						159	7	5	NaN	NaN	NaN	0.058149	1	38063	9.9197	9.9016	1	61950			20495	792	17292	17787	20495	20495		
VGSGDTNNFPYLEK	14	Unmodified	_VGSGDTNNFPYLEK_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.867545	1539.72054	2.4118	0.0018592	0.41913	0.0003231	2.8309	0.0021823	770.86719179888	9.9041	0.32803	9.9041	9.78	10.108	0	432	52	1.035754240522	0.0341872929561484	1.035754240522	418.569183558562	0	13.8157747667252						1278	38	5	NaN	NaN	NaN	1.5365E-05	1	19711	112.73	94.996	1	403610			20496	3013	17293	17788	20496	20496		
VGSHITGGDIYGIVSENSLIK	21	Unmodified	_VGSHITGGDIYGIVSENSLIK_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	720.382942	2158.127	1.3848	0.00099761	-0.65271	-0.0004702	0.73212	0.00052741	720.717275941479	14.329	0.079797	14.329	14.294	14.373	-1.7764E-15	456	79	1.01965166402748	0.0524274808649311	1.01965166402748	616.509967607194	0	31.6991239950495						351	10	4	NaN	NaN	NaN	0.017247	1	34151	41.499	40.32	1	74805			20497	1006	17294	17789	20497	20497		
VGSLDNVGHLPAGGAVK	17	Unmodified	_VGSLDNVGHLPAGGAVK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	530.958128	1589.85255	-0.36121	-0.00019179	-0.98339	-0.00052214	-1.3446	-0.00071393	531.291498949446	7.8197	0.204	7.8197	7.7309	7.935	0	783	148	0.798467866007927	0.0999560345624718	0.798467866007927	483.876789230957	0	60.5740157210876						1200	24	5	NaN	NaN	NaN	9.0174E-05	1	21279	110.58	97.986	1	583550			20498	869	17295	17790	20498	20498		
VGSLDNVGHLPAGGAVK	17	Unmodified	_VGSLDNVGHLPAGGAVK_			0	0	0	P27816	P27816	P27816	MAP4	Microtubule-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.933554	1589.85255	3.1086	0.0024742	-1.6781	-0.0013357	1.4305	0.0011386	795.932111571661	7.8285	0.14191	7.8285	7.7753	7.9172	0	342	46	1.09598084995137	0.0300572976074456	1.09598084995137	442.783502633438	0	12.1433467700746						494	17	5	NaN	NaN	NaN	6.536E-05	1	21280	89.359	87.223	1	203600			20499	869	17295	17790	20499	20499		
VGSLNCIVAVSQNMGIGK	18	Unmodified	_VGSLNCIVAVSQNMGIGK_			0	0	0	P00374	P00374	P00374	DHFR	Dihydrofolate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.321973	1845.94409	-0.097705	-6.0217E-05	1.0073	0.00062081	0.90957	0.00056059	616.322534732441	14.994	0.053216	14.994	14.976	15.03	0	603	19	0.920633820089869	0.0121641171865265	0.920633820089869	557.242004212026	0	7.36270696619454						59	7	3	NaN	NaN	NaN	0.038033	1	28384	36.46	35.721	1	7774			20500	473	17296	17791	20500	20500		
VGSLNCIVAVSQNMGIGK	18	Unmodified	_VGSLNCIVAVSQNMGIGK_			0	0	0	P00374	P00374	P00374	DHFR	Dihydrofolate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.979321	1845.94409	1.6086	0.0014863	6.6153	0.0061124	8.2239	0.0075987	924.486863089009	15.003	0.088681	15.003	14.976	15.065	0	264	76	1.14797626962532	0.04987538898843	1.14797626962532	463.233885565099	0	20.1258256346378						412	11	4	NaN	NaN	NaN	0.057971	1	28387	36.96	30.755	1	77461			20501	473	17296	17791	20501	20501		
VGSTSENITQK	11	Unmodified	_VGSTSENITQK_			0	0	0	O00571;O15523	O00571	O00571	DDX3X;DDX3Y	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.298767	1162.58298	1.5177	0.00088373	-0.37433	-0.00021797	1.1433	0.00066576	582.298403113074	2.6409	0.21282	2.6409	2.6143	2.8272	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	355.837838207563	0	9.06648863569148						305	25	3	NaN	NaN	NaN	0.00084199	1	8412	81.099	57.523	1	71346			20502	93	17297	17792	20502	20502		
VGTALPGK	8	Unmodified	_VGTALPGK_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	371.726521	741.438489	-0.018457	-6.8609E-06	-0.34762	-0.00012922	-0.36607	-0.00013608	371.726415843559	3.3592	0.20406	3.3592	3.3237	3.5278	0	903	43	0.716455593386714	0.0287723725022091	0.716455593386714	292.295011036047	0	11.7383701316532						259	24	2	NaN	NaN	NaN	0.053233	1	560	30.562	12.867	1	51720			20503	1543	17298	17793	20503	20503		
VGTDLLEEEITK	12	Unmodified	_VGTDLLEEEITK_			0	0	0	P29692	P29692	P29692	EEF1D	Elongation factor 1-delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.856115	1345.69768	1.1831	0.00079722	1.0612	0.00071513	2.2443	0.0015123	673.85706750128	12.068	0.33702	12.068	11.997	12.334	0	519	97	0.97729762293174	0.0645618437365257	0.97729762293174	395.452696585443	0	26.1242374923082						1101	39	5	NaN	NaN	NaN	1.3574E-16	1	13782	191.24	148.07	1	1993500			20504	890	17299	17794	20504	20504		
VGTFFSEVK	9	Unmodified	_VGTFFSEVK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.26875	1012.52295	0.52267	0.00026513	1.136	0.00057627	1.6587	0.00084141	507.268283481617	9.7622	0.18629	9.7622	9.6913	9.8776	0	696	55	0.857641857947968	0.0366700093761401	0.857641857947968	348.193707286723	0	14.887643825439						409	22	2	NaN	NaN	NaN	0.031463	1	4569	28.096	15.269	1	187640			20505	1259	17300	17795	20505	20505		
VGTGEPCCDWVGDEGAGHFVK	21	Unmodified	_VGTGEPCCDWVGDEGAGHFVK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.661494	2275.96265	1.9076	0.0014491	0.030493	2.3165E-05	1.9381	0.0014723	759.996243494943	9.913	0.22166	9.913	9.8509	10.073	0	501	133	0.98941132619024	0.0889693163929047	0.98941132619024	598.027870901949	0	53.775542536917						2146	26	7	NaN	NaN	NaN	2.2671E-16	1	35423	217.16	205.48	1	1272000			20506	1205	17301	17796	20506	20506		
VGTSFSIPVVSDVR	14	Unmodified	_VGTSFSIPVVSDVR_			0	0	0	Q92979	Q92979	Q92979	EMG1	Ribosomal RNA small subunit methyltransferase NEP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.898648	1461.78274	1.5699	0.001149	-0.53674	-0.00039284	1.0332	0.00075619	731.898490600977	14.32	0.31918	14.32	14.152	14.471	0	444	34	1.02770517576159	0.0221425729106015	1.02770517576159	415.513662226353	0	8.95251067931997						893	37	4	NaN	NaN	NaN	0.00024827	1	17325	73.655	48.042	1	458330			20507	2450	17302	17797	20507	20507		
VGVDPLIIPTDYWK	14	Unmodified	_VGVDPLIIPTDYWK_			0	0	0	Q9NQW7	Q9NQW7	Q9NQW7	XPNPEP1	Xaa-Pro aminopeptidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.440149	1614.86574	1.9399	0.0015683	-1.0182	-0.00082316	0.92173	0.00074516	808.439654713309	17.743	0.22165	17.743	17.681	17.903	0	369	55	1.07793901817685	0.0361209959185984	1.07793901817685	435.436222854808	0	14.5911686684747						604	26	4	NaN	NaN	NaN	0.059895	1	22048	26.465	24.164	1	206220			20508	3005	17303	17798	20508	20508		
VGVIGFPNVGK	11	Unmodified	_VGVIGFPNVGK_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.818941	1085.62333	-0.28484	-0.0001549	-1.6364	-0.0008899	-1.9212	-0.0010448	543.818024896896	11.855	0.16853	11.855	11.793	11.961	0	663	43	0.880024865079826	0.0284657258071274	0.880024865079826	356.95822881851	0	11.5463499604909						448	20	4	NaN	NaN	NaN	0.0065966	1	6364	60.589	35.336	1	215670			20509	2769	17304	17799	20509	20509		
VGVSEAGLQHEILR	14	Unmodified	_VGVSEAGLQHEILR_			0	0	0	Q6UWE0	Q6UWE0	Q6UWE0	LRSAM1	E3 ubiquitin-protein ligase LRSAM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	503.27909	1506.81544	-1.2804	-0.00064442	-0.62664	-0.00031538	-1.9071	-0.0009598	503.278612173055	9.5406	0.079828	9.5406	9.5051	9.5849	0	744	31	0.82502364452135	0.0204090624710167	0.82502364452135	500.207320392184	0	12.3739028791917						174	10	3	NaN	NaN	NaN	0.00052126	1	18712	54.199	20.773	1	50426			20510	2087	17305	17800	20510	20510		
VGVTVAQTTMEPHLLEACVR	20	Unmodified	_VGVTVAQTTMEPHLLEACVR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.713529	2210.11876	0.76833	0.00056681	-1.0292	-0.00075929	-0.26091	-0.00019248	738.047988574031	12.298	0.097554	12.298	12.263	12.361	0	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	605.452998965178	0	12.1901297184237						241	12	5	NaN	NaN	NaN	1.2129E-05	1	34792	59.997	57.895	1	59414			20511	1101	17306	17801	20511	20511		
VGVWNVPYISNIYLIK	16	Unmodified	_VGVWNVPYISNIYLIK_			0	0	0	Q02809	Q02809	Q02809	PLOD1	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.52983	1877.04511	1.236	0.0011613	-2.1698	-0.0020386	-0.93376	-0.00087729	940.029468215051	19.508	0.088674	19.508	19.454	19.543	0	222	52	1.17589687683038	0.0338733288251551	1.17589687683038	474.441859054823	0	13.6669510880078						294	11	3	NaN	NaN	NaN	0.0033178	1	29085	60	47.317	1	73900			20512	1531	17307	17802	20512	20512		
VGWEQLLTTIAR	12	Unmodified	_VGWEQLLTTIAR_			0	0	0	O43707;P12814	O43707;P12814	O43707	ACTN4;ACTN1	Alpha-actinin-4;Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.890626	1385.7667	0.40342	0.00027993	0.0026182	1.8167E-06	0.40604	0.00028175	693.890954530036	18.851	0.19506	18.851	18.772	18.967	0	501	52	0.98941132619024	0.0343103064176149	0.98941132619024	400.236670800584	0	13.8792051912429						755	23	5	NaN	NaN	NaN	3.4658E-11	1	15027	153.33	130.28	1	663420			20513	221;671	17308	17803	20513	20513		
VGWIFTDLVSEDTR	14	Unmodified	_VGWIFTDLVSEDTR_			0	0	0	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	819.41212	1636.80969	1.2134	0.00099427	2.747	0.0022509	3.9604	0.0032452	819.414510736824	18.417	0.11525	18.417	18.337	18.452	0	360	34	1.08395544855938	0.0220572074083873	1.08395544855938	437.816633087131	0	8.90904907178538						214	14	4	NaN	NaN	NaN	1.5276E-05	1	22687	96.946	79.215	1	47144			20514	2334	17309	17804	20514	20514		
VGWIFTDLVSEDTRK	15	Unmodified	_VGWIFTDLVSEDTRK_			0	0	1	Q8TAT6	Q8TAT6	Q8TAT6	NPLOC4	Nuclear protein localization protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.308826	1764.90465	-0.6028	-0.00035524	-0.56897	-0.0003353	-1.1718	-0.00069053	589.643104752426	16.067	0.10642	16.067	16.032	16.138	0	705	25	0.851531465363931	0.0163000411099919	0.851531465363931	515.59195513015	0	9.86947682668517						198	13	4	NaN	NaN	NaN	0.00415	1	26269	54.199	46.642	1	53204			20515	2334	17310	17805	20515	20515		
VGWSVDFSRPQLGEDEFSYGFDGR	24	Unmodified	_VGWSVDFSRPQLGEDEFSYGFDGR_			0	0	1	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	917.420896	2749.24086	0.8195	0.00075183	0.83078	0.00076217	1.6503	0.001514	917.755936568234	16.519	0.097509	16.519	16.484	16.581	0	465	46	1.01360860968299	0.0302319815976242	1.01360860968299	612.013417070515	0	18.2539672469452						287	12	4	NaN	NaN	NaN	7.7794E-13	1	37750	94.865	92.895	1	61447			20516	1919	17311	17806	20516	20516		
VGWVLGPDHIMK	12	Unmodified	_VGWVLGPDHIMK_			0	0	0	Q16773	Q16773	Q16773	CCBL1	Kynurenine--oxoglutarate transaminase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.244552	1350.71183	-2.4714	-0.0011152	-0.3548	-0.0001601	-2.8262	-0.0012753	451.244798924287	11.678	0.070937	11.678	11.633	11.704	0	795	25	0.790287188799094	0.0163659109219131	0.790287188799094	479.649766400973	0	9.93297811465646						144	9	3	NaN	NaN	NaN	0.056873	1	13909	20.183	11.709	1	37853			20517	1906	17312	17807	20517	20517		
VGYTPDWIFLLR	12	Unmodified	_VGYTPDWIFLLR_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.403369	1478.79219	0.81195	0.00060117	-0.085289	-6.3148E-05	0.72666	0.00053802	740.402949717039	19.579	0.11527	19.579	19.525	19.641	0	426	79	1.03977710643793	0.052326186179213	1.03977710643793	420.349147041895	0	21.1538295969403						486	14	4	NaN	NaN	NaN	0.00019869	1	17878	65.933	61.405	1	207860			20518	1503	17313	17808	20518	20518		
VGYYVNNEYTETELR	15	Unmodified	_VGYYVNNEYTETELR_			0	0	0	Q9Y294	Q9Y294	Q9Y294	ASF1A	Histone chaperone ASF1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.43378	1848.85301	2.3	0.0021285	0.93825	0.00086829	3.2382	0.0029967	925.434655716626	9.9839	0.14184	9.9839	9.9041	10.046	0	297	49	1.12600091227925	0.0319663599333924	1.12600091227925	454.361028943456	0	12.898984390264						362	17	3	NaN	NaN	NaN	0.0022437	1	28450	36.952	23.153	1	75939			20519	3338	17314	17809	20519	20519		
VHAAVQPGSLDSESGIFACAFDQSESR	27	Unmodified	_VHAAVQPGSLDSESGIFACAFDQSESR_			0	0	0	O43660	O43660	O43660	PLRG1	Pleiotropic regulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	955.775122	2864.30354	1.4096	0.0013472	0.51423	0.00049149	1.9238	0.0018387	956.109764789125	14.196	0.070941	14.196	14.161	14.232	0	444	46	1.02770517576159	0.030194421347751	1.02770517576159	620.399415653011	0	18.2276024310605						318	9	5	NaN	NaN	NaN	4.0616E-07	1	38021	75.686	73.057	1	60592			20520	214	17315	17810	20520	20520		
VHAELADVLTEAVVDSILAIK	21	Unmodified	_VHAELADVLTEAVVDSILAIK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.082493	2205.22565	-0.68717	-0.00050581	-0.18655	-0.00013731	-0.87371	-0.00064313	736.416057972263	20.217	0.0088888	20.217	20.208	20.217	0	594	25	0.926715457081489	0.0162165760860672	0.926715457081489	560.241662486484	0	9.80365815296636						56	2	4	NaN	NaN	NaN	9.5439E-06	1	34740	70.598	68.357	1	8276.2			20521	1016	17316	17811	20521	20521		
VHAELADVLTEAVVDSILAIK	21	Unmodified	_VHAELADVLTEAVVDSILAIK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.082493	2205.22565	0.67814	0.00049917	0.19214	0.00014143	0.87027	0.00064059	736.417153317995	20.217	0.079806	20.217	20.208	20.288	0	405	46	1.05384839605172	0.0301527697739288	1.05384839605172	637.099307560638	0	18.2287213378864						204	10	5	NaN	NaN	NaN	1.1674E-07	1	34741	103.23	90.855	1	124470			20522	1016	17316	17811	20522	20522		
VHAIPLR	7	Unmodified	_VHAIPLR_			0	0	0	P62873;P16520;P62879	P62873;P62879	P62873	GNB1;GNB3;GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-3;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	403.25578	804.497007	0.16945	6.8331E-05	1.7472	0.00070458	1.9167	0.00077292	403.256480975917	3.8026	0.14187	3.8026	3.776	3.9179	0	750	40	0.820941264895493	0.0265373178651986	0.820941264895493	334.446622572155	0	10.8111465602466						214	17	2	NaN	NaN	NaN	0.0027736	1	1030	97.926	77.578	1	57942			20523	1408;1410	17317	17812	20523	20523		
VHAIQCDVRDPDMVQNTVSELIK	23	Unmodified	_VHAIQCDVRDPDMVQNTVSELIK_			0	0	1	Q16698	Q16698	Q16698	DECR1	2,4-dienoyl-CoA reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	667.586182	2666.31562	0.69918	0.00046676	-0.8559	-0.00057139	-0.15672	-0.00010462	667.837202040965	13.832	0.079809	13.832	13.797	13.877	0	615	55	0.912521036363781	0.0365429879949484	0.912521036363781	734.749647165164	0	29.4239217132363						309	10	4	NaN	NaN	NaN	0.0084325	1	37491	30.172	29.617	1	68785			20524	1900	17318	17813	20524	20524		
VHAPGLNLSGVGGK	14	Unmodified	_VHAPGLNLSGVGGK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.367318	1304.72008	1.1828	0.00077278	-3.8105	-0.0024897	-2.6278	-0.0017169	653.867339382372	7.5801	0.13301	7.5801	7.5358	7.6688	0	525	28	0.973257487423603	0.0181843844613631	0.973257487423603	393.943635954456	0	7.36045971890394						207	16	3	NaN	NaN	NaN	0.0055115	1	12508	40.861	28.265	1	84119			20525	1584	17319	17814	20525	20525		
VHAVIGVLMDDTDPLVTVMK	20	Unmodified	_VHAVIGVLMDDTDPLVTVMK_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.383009	2152.1272	0.11194	8.0413E-05	-1.7332	-0.0012451	-1.6212	-0.0011647	718.716463636994	17.823	0.097538	17.823	17.77	17.867	0	636	58	0.898312834727904	0.0385597862255215	0.898312834727904	543.15478968224	0	23.314742668526						309	12	4	NaN	NaN	NaN	1.9657E-08	1	34067	92.747	89.306	1	59275			20526	1368	17320	17815	20526	20526		
VHCCFYFISPFGHGLK	16	Unmodified	_VHCCFYFISPFGHGLK_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.97977	1967.91748	0.25978	0.00017067	-0.13571	-8.9156E-05	0.12407	8.1513E-05	657.3139426002	13.398	0.088722	13.398	13.354	13.442	0	594	22	0.926715457081489	0.0141885207468854	0.926715457081489	560.664004619073	0	8.58407270622445						215	11	4	NaN	NaN	NaN	0.036983	1	31066	47.334	47.001	1	51120			20527	1792	17321	17816	20527	20527		
VHDLALR	7	Unmodified	_VHDLALR_			0	0	0	Q9Y383	Q9Y383	Q9Y383	LUC7L2	Putative RNA-binding protein Luc7-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	412.24287	822.471186	-1.0851	-0.00044734	2.271	0.0009362	1.1859	0.00048886	412.243863689469	3.6431	0.21277	3.6431	3.6076	3.8204	0	786	31	0.796423123669906	0.0204516951022167	0.796423123669906	324.339333119172	0	8.32885052363054						300	25	3	NaN	NaN	NaN	0.041853	1	1233	42.229	11.171	1	102980			20528	3372	17322	17817	20528	20528		
VHELNEEIGK	10	Unmodified	_VHELNEEIGK_			0	0	0	Q9Y383;Q9NQ29	Q9Y383;Q9NQ29	Q9Y383	LUC7L2;LUC7L	Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.303852	1166.59315	2.8274	0.0016521	-2.6095	-0.0015247	0.21792	0.00012733	584.302550826759	3.9002	0.39019	3.9002	3.714	4.1041	0	609	46	0.916577990479294	0.0304208382695857	0.916577990479294	371.461465926714	0	12.3286499301939						549	45	4	NaN	NaN	NaN	9.6554E-05	1	8513	101.82	82.562	1	289590			20529	3372;2995	17323	17818	20529	20529		
VHEYNVLLETLSR	13	Unmodified	_VHEYNVLLETLSR_			0	0	0	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.950862	1571.83076	-2.3262	-0.0012211	0.69722	0.000366	-1.629	-0.00085513	524.951224036944	13.15	0.07093	13.15	13.123	13.194	0	798	19	0.788241307691771	0.0122778508671118	0.788241307691771	477.726654676867	0	7.44119416748504						113	9	3	NaN	NaN	NaN	0.0051961	1	20730	54.27	44.527	1	26172			20530	912	17324	17819	20530	20530		
VHEYNVLLETLSR	13	Unmodified	_VHEYNVLLETLSR_			0	0	0	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.922655	1571.83076	1.5544	0.0012232	-0.80557	-0.00063392	0.7488	0.00058925	786.921532823833	13.15	0.21282	13.15	13.088	13.3	0	375	40	1.07392668217569	0.0260819868444595	1.07392668217569	433.916426599981	0	10.5383381547496						438	25	4	NaN	NaN	NaN	3.1215E-07	1	20731	93.162	86.786	1	119070			20531	912	17324	17819	20531	20531		
VHFALLGTWDEK	12	Unmodified	_VHFALLGTWDEK_			0	0	0	P22059	P22059	P22059	OSBP	Oxysterol-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.369527	1414.7245	0.97425	0.00069013	3.2005	0.0022672	4.1748	0.0029573	708.872937427672	13.726	0.062074	13.726	13.682	13.744	0	444	16	1.02770517576159	0.0100634150376897	1.02770517576159	415.643211595721	0	4.0700292696165						64	8	3	NaN	NaN	NaN	0.019932	1	15931	51.872	41.784	1	15486			20532	798	17325	17820	20532	20532		
VHGLALQISENLFSNK	16	Unmodified	_VHGLALQISENLFSNK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.656338	1768.94718	-0.75209	-0.00044423	-1.3773	-0.00081351	-2.1294	-0.0012577	590.655496203109	14.524	0.088662	14.524	14.489	14.577	0	735	25	0.831145085810763	0.0163204408443606	0.831145085810763	503.23929897228	0	9.88165285417404						148	11	3	NaN	NaN	NaN	0.00013091	1	26389	82.437	76.739	1	31384			20533	2083	17326	17821	20533	20533		
VHIDIGADGR	10	Unmodified	_VHIDIGADGR_			0	0	0	P31942	P31942	P31942	HNRNPH3	Heterogeneous nuclear ribonucleoprotein H3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.777805	1051.54106	0.70904	0.00037351	4.5625	0.0024034	5.2715	0.0027769	526.779282411346	5.4342	0.34581	5.4342	5.2391	5.5849	0	669	70	0.875957769340875	0.046755405979351	0.875957769340875	355.452769988821	0	18.9727623282771						698	40	5	NaN	NaN	NaN	2.7358E-05	1	5509	138.26	91.457	1	477710			20534	930	17327	17822	20534	20534		
VHIPNDDAQFDASHCDSDK	19	Unmodified	_VHIPNDDAQFDASHCDSDK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1085.95836	2169.90216	2.6783	0.0029085	-1.0928	-0.0011867	1.5855	0.0017218	1086.45865077984	5.7179	0.079795	5.7179	5.6736	5.7534	0	165	61	1.21370334790578	0.039766253926607	1.21370334790578	489.210517890064	0	16.02868584943						356	10	3	NaN	NaN	NaN	3.8794E-05	1	34303	56.473	56.039	1	67348			20535	1890	17328	17823	20535	20535		
VHIPNDDAQFDASHCDSDK	19	Unmodified	_VHIPNDDAQFDASHCDSDK_			0	0	0	Q16576	Q16576	Q16576	RBBP7	Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.307996	2169.90216	2.373	0.0017188	0.53475	0.00038733	2.9078	0.0021061	724.642578265803	5.7179	0.27492	5.7179	5.6115	5.8864	0	516	139	0.979317271586824	0.0931164650539906	0.979317271586824	592.102128748651	0	56.2988714481477						1511	32	6	NaN	NaN	NaN	1.737E-07	1	34304	116.06	115.96	1	489360			20536	1890	17328	17823	20536	20536		
VHIQSSQTVESSGLYTLQSILK	22	Unmodified	_VHIQSSQTVESSGLYTLQSILK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	806.767345	2417.2802	1.7929	0.0014465	0.11212	9.0458E-05	1.9051	0.0015369	807.101994703728	16.014	0.15073	16.014	15.978	16.129	0	354	34	1.08796502040166	0.0220541677756794	1.08796502040166	657.363320371143	0	13.3254292970656						342	18	4	NaN	NaN	NaN	1.9751E-06	1	36433	92.319	91.622	1	85532			20537	1061	17329	17824	20537	20537		
VHLEDVFQLFK	11	Unmodified	_VHLEDVFQLFK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.918722	1373.73434	-2.8108	-0.0012899	3.9095	0.0017941	1.0987	0.00050421	458.920680144176	17.637	0.044338	17.637	17.601	17.646	0	807	16	0.782101955086014	0.0102351044387214	0.782101955086014	474.601402839957	0	6.21094844890968						53	6	2	NaN	NaN	NaN	0.0039407	1	14630	60.589	57.244	1	10025			20538	2900	17330	17825	20538	20538		
VHLENMGSHDIVDGNHR	17	Unmodified	_VHLENMGSHDIVDGNHR_			0	0	0	Q01082;P11277;O15020	Q01082;O15020	Q01082	SPTBN1;SPTB;SPTBN2	Spectrin beta chain, non-erythrocytic 1;Spectrin beta chain, erythrocytic;Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	483.230062	1928.89114	-0.89832	-0.0004341	0.97514	0.00047122	0.076815	3.7119E-05	483.230180541927	4.9465	0.088663	4.9465	4.911	4.9997	0	795	22	0.790287188799094	0.0143191751131978	0.790287188799094	637.587494229419	0	11.5524167786768						176	11	4	NaN	NaN	NaN	0.067918	1	30261	29.131	29.009	1	48049			20539	1511;137	17331	17826	20539	20539		
VHLFGASLGGFLAQK	15	Unmodified	_VHLFGASLGGFLAQK_			0	0	0	Q9NZD8	Q9NZD8	Q9NZD8	SPG21	Maspardin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	515.624309	1543.8511	-2.7299	-0.0014076	0.17116	8.8253E-05	-2.5587	-0.0013194	515.624255620234	14.852	0.070939	14.852	14.817	14.888	0	822	19	0.771863999559055	0.0122898254393368	0.771863999559055	467.874854429711	0	7.44962880984355						78	9	2	NaN	NaN	NaN	0.0017019	1	19860	67.881	57.63	1	18468			20540	3131	17332	17827	20540	20540		
VHLTPYTVDSPICDFLELQR	20	Unmodified	_VHLTPYTVDSPICDFLELQR_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	801.73862	2402.19403	0.11806	9.4653E-05	-0.22765	-0.00018252	-0.10959	-8.7862E-05	802.07271727023	18.053	0.13299	18.053	17.991	18.124	0	549	40	0.957085760909907	0.0263027118748081	0.957085760909907	578.305036321471	0	15.8930279473105						465	16	5	NaN	NaN	NaN	5.7861E-12	1	36360	121.86	116.52	1	113190			20541	2237	17333	17828	20541	20541		
VHLVGIDIFTGK	12	Unmodified	_VHLVGIDIFTGK_			0	0	0	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.587084	1297.73942	-2.2666	-0.00098275	0.34711	0.0001505	-1.9194	-0.00083225	433.587372636558	14.081	0.16848	14.081	14.036	14.205	0	867	40	0.741107305531458	0.0266743841187955	0.741107305531458	449.986617056941	0	16.1961915394783						305	20	3	NaN	NaN	NaN	0.00039561	1	12301	100.84	91.322	1	89172			20542	1434	17334	17829	20542	20542		
VHLVGIDIFTGK	12	Unmodified	_VHLVGIDIFTGK_			0	0	0	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.876988	1297.73942	1.6096	0.0010461	2.1033	0.0013669	3.713	0.002413	649.878921314151	14.072	0.33695	14.072	13.983	14.32	0	510	88	0.983355730988811	0.0585293848466544	0.983355730988811	398.053491055836	0	23.6921647307982						1845	39	6	NaN	NaN	NaN	0.047881	1	12303	50.297	30.74	1	4173600			20543	1434	17334	17829	20543	20543		
VHMFEAHSDYIR	12	Unmodified	_VHMFEAHSDYIR_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	752.853718	1503.69288	2.0065	0.0015106	-1.3673	-0.0010293	0.63919	0.00048122	752.852167204529	6.3653	0.15961	6.3653	6.2855	6.4451	0	408	49	1.0518390438467	0.0321562992894993	1.0518390438467	425.160127279455	0	12.9977836235867						427	19	4	NaN	NaN	NaN	5.4675E-05	1	18618	85.622	74.267	1	102410			20544	973	17335	17830	20544	20544		
VHMWEQTVK	9	Unmodified	_VHMWEQTVK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.292233	1156.56991	1.3754	0.00079678	1.4025	0.00081243	2.7779	0.0016092	579.293955201312	5.1593	0.25717	5.1593	5.0617	5.3189	0	615	34	0.912521036363781	0.0223147973671984	0.912521036363781	369.854734803607	0	9.04443090466054						400	30	4	NaN	NaN	NaN	0.012104	1	8241	62.969	56.278	1	99887			20545	1764	17336	17831	20545	20545		
VHNDAQSFDYDHDAFLGAEEAK	22	Unmodified	_VHNDAQSFDYDHDAFLGAEEAK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1240.04347	2478.0724	0.63887	0.00079223	0.15169	0.0001881	0.79056	0.00098033	1240.54505346852	9.4608	0.035462	9.4608	9.4342	9.4696	0	63	37	1.28111162701928	0.0237455493197651	1.28111162701928	515.972252733308	0	9.56360422972324						95	5	2	NaN	NaN	NaN	0.0005479	1	36721	50.131	48.507	1	22002			20546	241	17337	17832	20546	20546		
VHNDAQSFDYDHDAFLGAEEAK	22	Unmodified	_VHNDAQSFDYDHDAFLGAEEAK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	620.525376	2478.0724	0.38809	0.00024082	0.79878	0.00049566	1.1869	0.00073648	620.776574851444	9.4519	0.1596	9.4519	9.4076	9.5672	0	645	37	0.892219381832517	0.0243755060720344	0.892219381832517	718.685782500116	0	19.6345540255309						522	19	6	NaN	NaN	NaN	1.019E-11	1	36722	151.55	147.79	1	279260			20547	241	17337	17832	20547	20547		
VHNDAQSFDYDHDAFLGAEEAK	22	Unmodified	_VHNDAQSFDYDHDAFLGAEEAK_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	827.031409	2478.0724	1.5887	0.0013139	0.80455	0.00066539	2.3932	0.0019793	827.366322760525	9.4519	0.17735	9.4519	9.4076	9.5849	0	531	121	0.969216233931596	0.0808699715368217	0.969216233931596	585.53158532621	0	48.8558909575411						1209	21	6	NaN	NaN	NaN	2.1217E-38	1	36723	200.17	198.55	1	577740			20548	241	17337	17832	20548	20548		
VHPAVVIR	8	Unmodified	_VHPAVVIR_			0	0	0	P62829	P62829	P62829	RPL23	60S ribosomal protein L23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	445.782162	889.549771	1.7671	0.00078776	0.47863	0.00021337	2.2458	0.0010011	445.782528989495	3.7494	0.25712	3.7494	3.6874	3.9445	0	705	58	0.851531465363931	0.0386991694587414	0.851531465363931	346.352998346327	0	15.7405497280352						589	30	4	NaN	NaN	NaN	0.00077188	1	2161	110.23	85.412	1	457230			20549	1400	17338	17833	20549	20549		
VHPVSTMIK	9	Unmodified	_VHPVSTMIK_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.28642	1010.55829	2.3847	0.0012074	0.43937	0.00022245	2.8241	0.0014298	506.286928633354	3.9888	0.3813	3.9888	3.9179	4.2992	0	648	70	0.890187667287968	0.046755405979351	0.890187667287968	361.416392873601	0	18.9827053298542						1440	44	5	NaN	NaN	NaN	0.061186	1	4528	37.722	21.265	1	1962200			20550	471	17339	17834	20550	20550		
VHQLYETIQR	10	Unmodified	_VHQLYETIQR_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.846219	1285.67788	2.1274	0.0013697	-1.6077	-0.0010351	0.51976	0.00033465	643.845773758247	5.1947	0.17738	5.1947	5.1327	5.31	0	528	28	0.971237000454584	0.0181818689972096	0.971237000454584	393.186799518963	0	7.36058333541655						350	21	4	NaN	NaN	NaN	0.00089278	1	11934	88.181	70.711	1	150850			20551	1684	17340	17835	20551	20551		
VHQVTPQTHFIS	12	Unmodified	_VHQVTPQTHFIS_			0	0	0	Q9GZP4	Q9GZP4	Q9GZP4	PITHD1	PITH domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.364776	1392.715	1.5482	0.0010797	-1.1579	-0.00080748	0.39031	0.00027219	697.363455303606	5.8332	0.14186	5.8332	5.7534	5.8953	0	504	31	0.987393073566096	0.0201867152025123	0.987393073566096	399.400565477343	0	8.16552767368967						293	17	3	NaN	NaN	NaN	2.0409E-05	1	15242	103.87	85.536	1	90015			20552	2826	17341	17836	20552	20552		
VHSFPTLK	8	Unmodified	_VHSFPTLK_			0	0	0	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.766178	927.517802	0.73639	0.00034225	1.2071	0.00056102	1.9435	0.00090327	464.766758665357	5.1947	0.34582	5.1947	5.1149	5.4608	0	690	103	0.86171403876517	0.0693041476010804	0.86171403876517	350.276536584084	0	28.1713140329075						1024	40	4	NaN	NaN	NaN	0.0003191	1	2829	121.31	92.003	1	504170			20553	554	17342	17837	20553	20553		
VHSPSGALEECYVTEIDQDK	20	Unmodified	_VHSPSGALEECYVTEIDQDK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.68284	2276.02669	1.0867	0.00082558	1.3812	0.0010493	2.468	0.0018749	760.018124342312	10.259	0.23052	10.259	10.17	10.401	0	582	40	0.934820374997243	0.0263355149208984	0.934820374997243	565.031472530347	0	15.9179187505878						837	27	5	NaN	NaN	NaN	1.7114E-07	1	35424	108.91	104.32	1	257480			20554	792	17343	17838	20554	20554		
VHSPSGAVEECHVSELEPDK	20	Unmodified	_VHSPSGAVEECHVSELEPDK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1103.50768	2205.00081	1.914	0.0021122	-0.81422	-0.00089849	1.0998	0.0012137	1104.00817418816	5.9219	0.10653	5.9219	5.8598	5.9663	0	153	22	1.22165005014568	0.0139038682527339	1.22165005014568	492.363753254758	0	5.60370030423974						159	13	3	NaN	NaN	NaN	0.00070833	1	34732	36.96	35.227	1	25365			20555	326	17344	17839	20555	20555		
VHSPSGAVEECHVSELEPDK	20	Unmodified	_VHSPSGAVEECHVSELEPDK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.007547	2205.00081	0.95341	0.00070172	1.1715	0.00086226	2.1249	0.001564	736.342682281568	5.9041	0.21286	5.9041	5.7889	6.0017	0	615	58	0.912521036363781	0.0385597862255215	0.912521036363781	551.660836420866	0	23.3111600431102						844	25	5	NaN	NaN	NaN	6.6703E-06	1	34733	59.997	49.976	1	222120			20556	326	17344	17839	20556	20556		
VHTVEDYQAIVDAEWNILYDK	21	Unmodified	_VHTVEDYQAIVDAEWNILYDK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.0797	2520.21727	0.40953	0.00034445	-0.21395	-0.00017995	0.19558	0.0001645	841.413773557643	18.231	0.17735	18.231	18.186	18.364	0	507	61	0.985374541851584	0.0403901990048783	0.985374541851584	595.237782476483	0	24.3986133884396						707	21	5	NaN	NaN	NaN	3.1352E-08	1	36919	77.347	76.096	1	193860			20557	2679	17345	17840	20557	20557		
VHVGDEDFVHLR	12	Unmodified	_VHVGDEDFVHLR_			0	0	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	356.433567	1421.70516	-1.3427	-0.00047859	-0.57909	-0.00020641	-1.9218	-0.000685	356.433310991818	7.935	0.10643	7.935	7.9083	8.0148	0	861	22	0.745211914437924	0.014365130472816	0.745211914437924	602.747452432079	0	11.6189041379927						205	13	4	NaN	NaN	NaN	0.041394	1	16145	19.256	15.053	1	62561			20558	505	17346	17841	20558	20558		
VHVGDEDFVHLR	12	Unmodified	_VHVGDEDFVHLR_			0	0	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.908997	1421.70516	-0.55397	-0.00026308	0.75493	0.00035852	0.20096	9.5439E-05	474.909453629776	7.9438	0.31936	7.9438	7.8906	8.21	0	771	61	0.806643990516186	0.0408578970116692	0.806643990516186	489.329853579396	0	24.7853935532183						750	37	6	NaN	NaN	NaN	5.0012E-08	1	16147	170.85	155.27	1	1189200			20559	505	17346	17841	20559	20559		
VHVGDEDFVHLR	12	Unmodified	_VHVGDEDFVHLR_			0	0	0	P04080	P04080	P04080	CSTB	Cystatin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.859857	1421.70516	2.4849	0.0017689	1.4824	0.0010553	3.9673	0.0028241	711.860365570663	7.935	0.2573	7.935	7.8906	8.1479	0	426	49	1.03977710643793	0.0321829369854028	1.03977710643793	420.505578107155	0	13.0153899700626						667	30	4	NaN	NaN	NaN	7.5608E-12	1	16148	118.91	92.452	1	290840			20560	505	17346	17841	20560	20560		
VHVIFNYK	8	Unmodified	_VHVIFNYK_			0	0	0	P27797	P27797	P27797	CALR	Calreticulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.287277	1018.56	1.1983	0.00061147	1.5655	0.00079887	2.7638	0.0014103	510.288134290545	6.8619	0.34587	6.8619	6.8087	7.1545	0	660	49	0.882057989648486	0.0325232324981577	0.882057989648486	358.077940855081	0	13.2030458989805						966	40	5	NaN	NaN	NaN	3.3115E-08	1	4714	150.06	93.167	1	1702400			20561	868	17347	17842	20561	20561		
VHVTQEDFEMAVAK	14	Unmodified	_VHVTQEDFEMAVAK_			0	0	0	P62195	P62195	P62195	PSMC5	26S protease regulatory subunit 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.392873	1602.77119	1.9004	0.0015249	0.47722	0.00038292	2.3776	0.0019078	802.392473952939	8.9021	0.079939	8.9021	8.8665	8.9464	0	306	22	1.12000185836644	0.0139997198598183	1.12000185836644	452.456642870554	0	5.65558548102797						118	10	3	NaN	NaN	NaN	0.0041369	1	21674	47.361	44.483	1	21828			20562	1369	17348	17843	20562	20562		
VHVTVDLK	8	Unmodified	_VHVTVDLK_			0	0	0	O60547	O60547	O60547	GMDS	GDP-mannose 4,6 dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.77146	909.528367	-0.5404	-0.0002463	0.8204	0.00037391	0.28	0.00012761	455.771910897881	5.2835	0.07984	5.2835	5.2568	5.3366	0	714	25	0.845418525735192	0.0163023058577868	0.845418525735192	343.751796991671	0	6.62860673516553						92	10	2	NaN	NaN	NaN	0.047806	1	2504	33.396	26.045	1	20672			20563	265	17349	17844	20563	20563		
VHYENNSPFLTITSMTR	17	Unmodified	_VHYENNSPFLTITSMTR_			0	0	0	P04843	P04843	P04843	RPN1	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.663163	2008.96766	-0.30276	-0.00020305	-0.58635	-0.00039324	-0.8891	-0.00059629	670.997067340382	13.141	0.15074	13.141	13.07	13.221	0	672	31	0.873923798053065	0.0203411270160542	0.873923798053065	528.649393501689	0	12.3046477097135						402	18	4	NaN	NaN	NaN	0.00013584	1	31793	82.437	81.342	1	125340			20564	518	17350	17845	20564	20564		
VIAALLQTMEDQGNQR	16	Unmodified	_VIAALLQTMEDQGNQR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.30872	1785.90433	-0.2027	-0.00012087	-0.49799	-0.00029695	-0.70068	-0.00041782	596.30844694105	14.391	0.17734	14.391	14.329	14.506	0	669	52	0.875957769340875	0.0345871250376812	0.875957769340875	530.333225715597	0	20.9401665599295						509	21	4	NaN	NaN	NaN	5.3061E-06	1	26853	83.775	81.295	1	159650			20565	74	17351	17846	20565	20565		
VIAALLQTMEDQGNQR	16	Unmodified	_VIAALLQTMEDQGNQR_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	893.959442	1785.90433	2.1323	0.0019062	0.75726	0.00067696	2.8896	0.0025831	893.960297942534	14.382	0.20394	14.382	14.302	14.506	0	219	52	1.17788915118882	0.0338686755985531	1.17788915118882	475.423573977984	0	13.6701885595209						759	24	5	NaN	NaN	NaN	4.0839E-44	1	26856	224.49	213.7	1	435750			20566	74	17351	17846	20566	20566		
VIACDGGGGALGHPK	15	Unmodified	_VIACDGGGGALGHPK_			0	0	0	O75380	O75380	O75380	NDUFS6	NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.853718	1407.69288	2.8293	0.0019942	-1.1319	-0.0007978	1.6974	0.0011964	704.853286387449	3.6785	0.088644	3.6785	3.6519	3.7406	0	402	31	1.05585747106793	0.0200921384005985	1.05585747106793	427.049742439934	0	8.12642119240269						165	11	3	NaN	NaN	NaN	2.4142E-07	1	15696	96.946	81.066	1	35062			20567	327	17352	17847	20567	20567		
VIAINVDDPDAANYNDINDVK	21	Unmodified	_VIAINVDDPDAANYNDINDVK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.55569	2287.09682	1.9837	0.0022704	-1.1887	-0.0013605	0.79498	0.0009099	1145.05611468109	12.768	0.16851	12.768	12.724	12.893	0	102	142	1.25537494996371	0.093188533338824	1.25537494996371	505.842231068186	0	37.5494951651261						2589	20	6	NaN	NaN	NaN	3.7555E-59	1	35537	273.55	264.39	1	1465700			20568	1822	17353	17848	20568	20568		
VIAQLSECEK	10	Unmodified	_VIAQLSECEK_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.800088	1175.58562	1.3431	0.00079083	1.4236	0.00083819	2.7667	0.001629	588.80175547779	5.3278	0.17738	5.3278	5.2391	5.4164	0	603	34	0.920633820089869	0.0222993386334626	0.920633820089869	373.07180283173	0	9.03644237741452						333	21	4	NaN	NaN	NaN	0.00030937	1	8754	111.39	95.81	1	83524			20569	2436	17354	17849	20569	20569		
VIASELGSMPELK	13	Unmodified	_VIASELGSMPELK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.370878	1372.7272	1.3871	0.00095345	-1.4576	-0.0010019	-0.070507	-4.8464E-05	687.371307860469	12.201	0.22172	12.201	12.148	12.369	0	435	73	1.03374239103424	0.0483277765845833	1.03374239103424	418.208717332351	0	19.5513869144345						858	26	5	NaN	NaN	NaN	1.571E-08	1	14583	150.21	104.17	1	323200			20570	3161	17355	17850	20570	20570		
VIATFTCSGEK	11	Unmodified	_VIATFTCSGEK_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.800088	1211.58562	1.8253	0.0011076	0.36523	0.00022162	2.1905	0.0013292	606.800382043442	6.0283	0.25717	6.0283	5.9751	6.2323	0	585	46	0.932794566565362	0.0303871346419722	0.932794566565362	377.869458246106	0	12.3096451420087						557	30	3	NaN	NaN	NaN	1.5765E-05	1	9778	83.358	68.823	1	160240			20571	1123	17356	17851	20571	20571		
VICAEEPYICK	11	Unmodified	_VICAEEPYICK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.328156	1380.64176	2.5823	0.0017852	0.34603	0.00023922	2.9283	0.0020244	691.328640334657	7.7398	0.26611	7.7398	7.6245	7.8906	0	492	58	0.995464410099171	0.0383415147321906	0.995464410099171	402.700029111277	0	15.5104782674103						732	31	4	NaN	NaN	NaN	1.7506E-07	1	14842	123.5	107.92	1	411390			20572	1155	17357	17852	20572	20572		
VICILSHPIK	10	Unmodified	_VICILSHPIK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.349551	1178.68455	1.3107	0.00077374	0.4011	0.00023679	1.7118	0.0010105	590.350020595569	8.6268	0.1331	8.6268	8.5825	8.7156	0	558	43	0.951016745717027	0.0283201170105575	0.951016745717027	385.372239569876	0	11.4759145581721						298	16	3	NaN	NaN	NaN	0.0042593	1	8854	69.905	37.952	1	80278			20573	1161	17358	17853	20573	20573		
VIDDTNITR	9	Unmodified	_VIDDTNITR_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.77747	1045.54039	1.5362	0.00080461	2.4715	0.0012945	4.0077	0.0020991	523.778832405527	4.7603	0.37242	4.7603	4.645	5.0174	0	684	61	0.86578508874114	0.0406935653833497	0.86578508874114	351.350893518323	0	16.5141681738539						1096	43	5	NaN	NaN	NaN	5.2422E-06	1	5370	125.98	72.301	1	1047200			20574	536	17359	17854	20574	20574		
VIDFDENTALDDAEEESFRK	20	Unmodified	_VIDFDENTALDDAEEESFRK_			0	0	1	Q14257	Q14257	Q14257	RCN2	Reticulocalbin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	781.692281	2342.05501	0.92935	0.00072647	0.45622	0.00035663	1.3856	0.0010831	782.026826420641	13.052	0.12413	13.052	13.008	13.132	0	486	49	0.999498404980629	0.032276430046501	0.999498404980629	604.021399448241	0	19.5054382765709						517	15	5	NaN	NaN	NaN	1.8353E-07	1	35978	95.263	93.162	1	182460			20575	1744	17360	17855	20575	20575		
VIDIEGCAHIVHK	13	Unmodified	_VIDIEGCAHIVHK_			0	0	0	P32929	P32929	P32929	CTH	Cystathionine gamma-lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.597654	1489.77113	-0.96664	-0.000481	0.93012	0.00046283	-0.036519	-1.8172E-05	497.598264889909	6.9062	0.070929	6.9062	6.8707	6.9417	0	768	28	0.808687310729125	0.0183898836962016	0.808687310729125	490.35366870645	0	11.150845101535						159	9	4	NaN	NaN	NaN	0.0020349	1	18224	54.584	49.433	1	44642			20576	942	17361	17856	20576	20576		
VIDLDMFK	8	Unmodified	_VIDLDMFK_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.759704	979.504854	-0.43705	-0.00021449	-1.677	-0.00082302	-2.1141	-0.0010375	490.758679006844	14.347	0.13301	14.347	14.294	14.427	0	714	34	0.845418525735192	0.0224203443559257	0.845418525735192	343.386263035431	0	9.10654076057028						320	16	3	NaN	NaN	NaN	0.018128	1	3836	47.349	39.167	1	102400			20577	1942	17362	17857	20577	20577		
VIDNFTSQLK	10	Unmodified	_VIDNFTSQLK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.816596	1163.61864	0.62517	0.00036436	-2.6167	-0.0015251	-1.9916	-0.0011607	582.81533645894	9.0174	0.07092	9.0174	8.9908	9.0617	0	603	31	0.920633820089869	0.0202763400038137	0.920633820089869	373.116316060455	0	8.21763563353966						119	9	2	NaN	NaN	NaN	0.026928	1	8442	44.57	29.807	1	31105			20578	914	17363	17858	20578	20578		
VIDPATATSVDLR	13	Unmodified	_VIDPATATSVDLR_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.369724	1356.72489	2.1048	0.00143	0.076068	5.1679E-05	2.1809	0.0014816	679.370075504192	9.9484	0.39899	9.9484	9.8243	10.223	0	450	91	1.02367897599655	0.0604681893723227	1.02367897599655	414.186175212708	0	24.4657638433755						2372	46	5	NaN	NaN	NaN	2.2221E-07	1	14106	147.19	115.23	1	1557100			20579	1175	17364	17859	20579	20579		
VIDPVAPR	8	Unmodified	_VIDPVAPR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	433.758352	865.502152	-1.8321	-0.00079471	-0.79452	-0.00034463	-2.6267	-0.0011393	433.758108068278	6.3299	0.1596	6.3299	6.2767	6.4363	0	774	67	0.804600385996946	0.0449624535592132	0.804600385996946	327.402346723708	0	18.2958062983058						430	19	3	NaN	NaN	NaN	0.071488	1	1792	40.203	18.275	1	139660			20580	565	17365	17860	20580	20580		
VIDVTVPLQCLVK	13	Unmodified	_VIDVTVPLQCLVK_			0	0	0	Q9NVH1	Q9NVH1	Q9NVH1	DNAJC11	DnaJ homolog subfamily C member 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.43127	1482.84799	0.46724	0.00034689	0.066175	4.9131E-05	0.53341	0.00039602	742.430890944244	16.333	0.15074	16.333	16.236	16.386	0	414	55	1.04781950764076	0.0362008098863784	1.04781950764076	423.589694895675	0	14.6344765514755						388	18	3	NaN	NaN	NaN	0.00035752	1	18007	83.438	76.691	1	90841			20581	3065	17366	17861	20581	20581		
VIEASDVVLEVLDAR	15	Unmodified	_VIEASDVVLEVLDAR_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.448702	1626.88285	0.83225	0.00067783	-2.5521	-0.0020786	-1.7199	-0.0014008	814.446245821277	19.135	0.13298	19.135	19.064	19.197	0	420	88	1.04379886199097	0.0582391281870487	1.04379886199097	421.618735936934	0	23.5243671002441						686	16	4	NaN	NaN	NaN	3.0527E-08	1	22387	130.99	103.61	1	209400			20582	2769	17367	17862	20582	20582		
VIEASDVVLEVLDAR	15	Unmodified	_VIEASDVVLEVLDAR_			0	0	0	Q9BVP2	Q9BVP2	Q9BVP2	GNL3	Guanine nucleotide-binding protein-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.30156	1626.88285	-1.6305	-0.00088587	1.38	0.00074975	-0.25054	-0.00013612	543.302486585503	19.135	0.04432	19.135	19.117	19.162	0	678	19	0.869855008346864	0.0122080642620082	0.869855008346864	527.034356311903	0	7.39671465750314						78	6	3	NaN	NaN	NaN	0.00013261	1	22388	62.705	58.177	1	13874			20583	2769	17367	17862	20583	20583		
VIEEEWQQVDR	11	Unmodified	_VIEEEWQQVDR_			0	0	0	P42166	P42166	P42166	TMPO	Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.849155	1429.68376	1.7068	0.0012218	0.026598	1.904E-05	1.7334	0.0012409	715.849120240702	8.6623	0.17745	8.6623	8.5736	8.7511	0	528	64	0.971237000454584	0.0424009137494717	0.971237000454584	392.765545180168	0	17.1468117433271						577	21	4	NaN	NaN	NaN	4.9684E-05	1	16374	92.445	82.93	1	151010			20584	1042	17368	17863	20584	20584		
VIEEQLEPAVEK	12	Unmodified	_VIEEQLEPAVEK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.371932	1382.72931	3.2874	0.0022761	-0.23239	-0.0001609	3.055	0.0021152	692.371914920166	7.7309	0.31045	7.7309	7.6511	7.9615	0	423	85	1.04178812298108	0.0563590660873043	1.04178812298108	421.433278626306	0	22.7988642580453						994	36	5	NaN	NaN	NaN	8.1342E-08	1	14919	124.46	102.41	1	718520			20585	1055	17369	17864	20585	20585		
VIEETEER	8	Unmodified	_VIEETEER_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.748379	1003.4822	0.2793	0.00014042	1.1329	0.00056954	1.4122	0.00070996	502.748090784635	2.5168	0.26606	2.5168	2.4547	2.7208	0	732	34	0.833184998970724	0.0224452877647342	0.833184998970724	338.305335353512	0	9.11365496706611						241	31	2	NaN	NaN	NaN	0.068587	1	4365	21.275	13.628	1	48576			20586	1298	17370	17865	20586	20586		
VIEINPYLLGTMAGGAADCSFWER	24	Unmodified	_VIEINPYLLGTMAGGAADCSFWER_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	890.761208	2669.26179	1.2089	0.0010769	-0.2623	-0.00023365	0.94662	0.00084321	891.095580563672	19.889	0.026607	19.889	19.88	19.907	0	219	25	1.17788915118882	0.0159371013447664	1.17788915118882	711.312677925651	0	9.62421822501449						81	4	5	NaN	NaN	NaN	0.00021786	1	37507	48.945	47.984	1	17223			20587	875	17371	17866	20587	20587		
VIELFSVCTNEDPK	14	Unmodified	_VIELFSVCTNEDPK_			0	0	0	Q96KB5	Q96KB5	Q96KB5	PBK	Lymphokine-activated killer T-cell-originated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.905813	1649.79707	2.9672	0.0024506	-0.65518	-0.00054111	2.312	0.0019095	825.906207403078	13.513	0.2394	13.513	13.442	13.682	0	348	82	1.09197348738011	0.0541031680427075	1.09197348738011	441.026042096611	0	21.8511771050511						1408	28	5	NaN	NaN	NaN	6.2994E-05	1	23028	80.623	73.768	1	421660			20588	2574	17372	17867	20588	20588		
VIEPQYFGLAYLFR	14	Unmodified	_VIEPQYFGLAYLFR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.461416	1714.90828	2.0445	0.0017551	-1.0051	-0.00086281	1.0394	0.00089229	858.961953600785	19.862	0.088668	19.862	19.836	19.924	0	312	49	1.11600111266355	0.0320103814139743	1.11600111266355	450.587767601229	0	12.9242579937596						283	11	3	NaN	NaN	NaN	5.5603E-08	1	24916	110.44	97.757	1	137610			20589	1055	17373	17868	20589	20589		
VIESTQDLGNDLAGVMALQR	20	Unmodified	_VIESTQDLGNDLAGVMALQR_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	710.700166	2129.07867	0.54884	0.00039006	-1.3252	-0.0009418	-0.77633	-0.00055174	711.368158910125	16.537	0.12414	16.537	16.475	16.599	0	498	28	0.991429299781895	0.018159253288641	0.991429299781895	599.498189963527	0	10.9805504840582						232	15	4	NaN	NaN	NaN	0.05555	1	33731	25.922	25.403	1	56935			20590	1511	17374	17869	20590	20590		
VIESTQGLGNDLAGVLALQR	20	Unmodified	_VIESTQGLGNDLAGVLALQR_			0	0	0	O15020	O15020	O15020	SPTBN2	Spectrin beta chain, non-erythrocytic 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1027.56566	2053.11677	0.24829	0.00025514	0.57857	0.00059452	0.82687	0.00084966	1028.06805950474	16.936	0.062106	16.936	16.91	16.972	0	156	37	1.21966378336455	0.0238368401892524	1.21966378336455	491.790836966146	0	9.61145173546322						166	8	3	NaN	NaN	NaN	4.0329E-08	1	32587	96.27	89.415	1	32103			20591	137	17375	17870	20591	20591		
VIEVGNNDIDDVNIIVFR	18	Unmodified	_VIEVGNNDIDDVNIIVFR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.53911	2043.06367	0.73211	0.00074861	0.26678	0.00027279	0.99889	0.0010214	1022.53949947645	17.362	0.12413	17.362	17.291	17.415	0	186	34	1.1997861197946	0.0218819419405492	1.1997861197946	483.791788776746	0	8.82349250309682						216	15	3	NaN	NaN	NaN	0.00089045	1	32403	44.571	37.715	1	51277			20592	1452;1818	17376	17871	20592	20592		
VIFFLPWQK	9	Unmodified	_VIFFLPWQK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.342052	1176.66955	-0.06152	-3.6256E-05	-5.7124	-0.0033666	-5.774	-0.0034028	589.337393672579	18.213	0.15961	18.213	18.151	18.311	0	597	34	0.924688525662974	0.0222931596374992	0.924688525662974	374.710933566028	0	9.03384267033556						280	19	3	NaN	NaN	NaN	0.0068712	1	8806	38.322	30.676	1	107480			20593	1064	17377	17872	20593	20593		
VIFFLPWQK	9	Unmodified	_VIFFLPWQK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.342052	1176.66955	-0.55525	-0.00032723	-2.0916	-0.0012327	-2.6468	-0.0015599	589.341642246624	18.222	0.08868	18.222	18.178	18.266	0	645	52	0.892219381832517	0.034524788934056	0.892219381832517	361.553468202696	0	13.9904573160429						361	11	4	NaN	NaN	NaN	0.0047669	1	8807	56.091	45.389	1	122330			20594	1064	17377	17872	20594	20594		
VIFHPEFLSSTSPLLPVDYEEFVR	24	Unmodified	_VIFHPEFLSSTSPLLPVDYEEFVR_			0	0	0	P13807	P13807	P13807	GYS1	Glycogen [starch] synthase, muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	941.153088	2820.43743	1.2471	0.0011737	-0.60815	-0.00057237	0.63897	0.00060137	941.486742869285	19.463	0.062073	19.463	19.437	19.499	0	414	28	1.04781950764076	0.0180916587638704	1.04781950764076	632.5894682607	0	10.9222940725346						213	8	6	NaN	NaN	NaN	2.759E-06	1	37938	84.266	81.198	1	49392			20595	686	17378	17873	20595	20595		
VIFLEDDDVAAVVDGR	16	Unmodified	_VIFLEDDDVAAVVDGR_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.941241	1731.86793	1.3814	0.0011976	2.4372	0.0021129	3.8186	0.0033105	866.943248860721	16.28	0.15961	16.28	16.227	16.386	0	306	55	1.12000185836644	0.0359918600529883	1.12000185836644	452.167558389604	0	14.5306468560656						537	19	5	NaN	NaN	NaN	3.9757E-09	1	25380	92.747	75.016	1	190100			20596	1558	17379	17874	20596	20596		
VIFLENYR	8	Unmodified	_VIFLENYR_			0	0	0	P06737;P11216;P11217	P06737;P11216;P11217	P06737	PYGL;PYGB;PYGM	Glycogen phosphorylase, liver form;Glycogen phosphorylase, brain form;Glycogen phosphorylase, muscle form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.290017	1052.56548	0.3622	0.00019099	-0.52317	-0.00027586	-0.16097	-8.4876E-05	527.289631099599	11.199	0.1596	11.199	11.128	11.287	0	639	34	0.896281965493857	0.0223395647977513	0.896281965493857	363.695524613619	0	9.06500415221598						278	19	3	NaN	NaN	NaN	0.0032571	1	5542	70.67	51.182	1	83738			20597	545;646;647	17380	17875	20597	20597		
VIFLQGGGCGQFSAVPLNLIGLK	23	Unmodified	_VIFLQGGGCGQFSAVPLNLIGLK_			0	0	0	Q9Y617	Q9Y617	Q9Y617	PSAT1	Phosphoserine aminotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	796.775117	2387.30352	0.90934	0.00072454	-0.72244	-0.00057562	0.1869	0.00014892	797.109156854597	19.898	0.044328	19.898	19.889	19.933	0	378	28	1.07192009927972	0.0180617378392283	1.07192009927972	647.715228765317	0	10.9139316114104						162	6	5	NaN	NaN	NaN	0.016533	1	36282	43.518	43.429	1	45534			20598	3450	17381	17876	20598	20598		
VIGDNPWTPEQLEQCK	16	Unmodified	_VIGDNPWTPEQLEQCK_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.456733	1912.89891	1.8285	0.0017507	-5.1137	-0.0048961	-3.2852	-0.0031454	957.952815359371	12.13	0.21283	12.13	12.006	12.219	0	264	64	1.14797626962532	0.0419241293629249	1.14797626962532	463.112977368669	0	16.9129004549809						639	25	3	NaN	NaN	NaN	0.00011346	1	29898	62.398	53.592	1	166340			20599	2013	17382	17877	20599	20599		
VIGELVGHTER	11	Unmodified	_VIGELVGHTER_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.332944	1208.65134	1.283	0.00077666	4.0956	0.0024792	5.3786	0.0032559	605.336652669462	5.31	0.17736	5.31	5.2125	5.3898	0	531	58	0.969216233931596	0.0384211546657859	0.969216233931596	392.634374575776	0	15.5646031345207						387	21	3	NaN	NaN	NaN	0.0081917	1	9704	50.297	32.827	1	108320			20600	2355	17383	17878	20600	20600		
VIGGDDLSTLTGK	13	Unmodified	_VIGGDDLSTLTGK_			0	0	0	P00492	P00492	P00492	HPRT1	Hypoxanthine-guanine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.343175	1274.6718	1.5996	0.0010211	-0.42201	-0.00026938	1.1776	0.00075174	638.343199084899	10.365	0.24831	10.365	10.285	10.534	0	549	43	0.957085760909907	0.0283122781138182	0.957085760909907	387.493492302411	0	11.4627382095107						600	29	5	NaN	NaN	NaN	0.00021938	1	11629	73.655	44.345	1	360410			20601	481	17384	17879	20601	20601		
VIGIDHIK	8	Unmodified	_VIGIDHIK_			0	0	0	P22061	P22061	P22061	PCMT1	Protein-L-isoaspartate(D-aspartate) O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.774003	893.533452	0.61912	0.00027722	-0.41412	-0.00018543	0.20499	9.1791E-05	447.77384204946	5.6203	0.21288	5.6203	5.5849	5.7978	8.8818E-16	732	34	0.833184998970724	0.0224390480115776	0.833184998970724	338.867775305529	0	9.12626882271132						338	25	3	NaN	NaN	NaN	0.005675	1	2237	78.178	50.474	1	123930			20602	799	17385	17880	20602	20602		
VIGMHYFSPVDK	12	Unmodified	_VIGMHYFSPVDK_			0	0	0	P40939	P40939	P40939	HADHA	Trifunctional enzyme subunit alpha, mitochondrial;Long-chain enoyl-CoA hydratase;Long chain 3-hydroxyacyl-CoA dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.904196	1391.69076	-1.8786	-0.00087338	-0.68064	-0.00031643	-2.5593	-0.0011898	464.904503347707	9.4076	0.15959	9.4076	9.3544	9.514	0	774	43	0.804600385996946	0.0286164420123584	0.804600385996946	488.191422532789	0	17.3630311108168						359	19	4	NaN	NaN	NaN	0.054786	1	15195	24.689	17.539	1	181750			20603	1026	17386	17881	20603	20603		
VIGQDSSEIHFK	12	Unmodified	_VIGQDSSEIHFK_			0	0	0	P63165;G2XKQ0	P63165	P63165	SUMO1	Small ubiquitin-related modifier 1;Small ubiquitin-related modifier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	453.90162	1358.68303	-0.88122	-0.00039999	-0.12276	-5.5721E-05	-1.004	-0.00045571	453.901789286283	6.4895	0.20393	6.4895	6.4185	6.6225	0	813	31	0.778007628350577	0.0204744871478547	0.778007628350577	472.168898775737	0	12.4258628030371						368	24	4	NaN	NaN	NaN	0.0098676	1	14154	37.749	29.276	1	121250			20604	47	17387	17882	20604	20604		
VIGSGCNLDSAR	12	Unmodified	_VIGSGCNLDSAR_			0	0	0	P07195;P07864;Q6ZMR3;P00338	P07195;P00338	P07195	LDHB;LDHC;LDHAL6A;LDHA	L-lactate dehydrogenase B chain;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.803694	1247.59283	2.5909	0.0016188	-5.5473	-0.003466	-2.9564	-0.0018472	624.803765417961	5.0795	0.39008	5.0795	4.9465	5.3366	0	558	52	0.951016745717027	0.0344006212312528	0.951016745717027	385.125927627412	0	13.9309546570145						1030	45	5	NaN	NaN	NaN	0.041714	1	10845	27.589	1.7324	1	379360			20605	553;471	17388	17883	20605	20605		
VIGSGCNLDSAR	12	Unmodified	_VIGSGCNLDSAR_			0	0	0	P07195;P07864;Q6ZMR3;P00338	P07195;P00338	P07195	LDHB;LDHC;LDHAL6A;LDHA	L-lactate dehydrogenase B chain;L-lactate dehydrogenase C chain;L-lactate dehydrogenase A-like 6A;L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.803694	1247.59283	2.7646	0.0017273	1.8385	0.0011487	4.6031	0.002876	624.805329598537	4.7159	0.51427	4.7159	4.6007	5.1149	0	552	106	0.955063035883597	0.0708641272112197	0.955063035883597	386.764491278463	0	28.6972975405574						1881	59	6	NaN	NaN	NaN	6.7153E-17	1	10848	216.26	172.52	1	4771900			20606	553;471	17388	17883	20606	20606		
VIGTLLGTVDK	11	Unmodified	_VIGTLLGTVDK_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.337164	1114.65977	0.73202	0.00040871	-1.1708	-0.00065369	-0.43876	-0.00024498	558.336466949046	11.146	0.16849	11.146	11.101	11.27	0	618	37	0.910492137470517	0.0243451033539596	0.910492137470517	369.195864441316	0	9.87170685806097						485	20	5	NaN	NaN	NaN	5.5633E-05	1	7133	104.39	77.938	1	297700			20607	72	17389	17884	20607	20607		
VIGVLEPLDPEDYTK	15	Unmodified	_VIGVLEPLDPEDYTK_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.443086	1686.87162	1.951	0.0016475	1.6017	0.0013525	3.5527	0.003	844.44490882796	15.615	0.31033	15.615	15.464	15.775	1.7764E-15	330	88	1.10399226369747	0.0580068776550058	1.10399226369747	445.798553294446	0	23.4235175282133						1409	36	5	NaN	NaN	NaN	0.00018667	1	24108	64.266	57.519	1	337140			20608	2612	17390	17885	20608	20608		
VIHDNFGIVEGLMTTVHAITATQK	24	Unmodified	_VIHDNFGIVEGLMTTVHAITATQK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.791496	2594.35266	1.8413	0.0015942	-0.55854	-0.00048358	1.2827	0.0011106	866.459365780426	19.907	0.20396	19.907	19.774	19.978	0	261	106	1.14997238118939	0.0699313026434745	1.14997238118939	694.557968081439	0	42.2369652209419						738	24	5	NaN	NaN	NaN	0.001297	1	37225	36.291	34.667	1	142960			20609	513	17391	17886	20609	20609		
VIHDNFGIVEGLMTTVHAITATQK	24	Unmodified	_VIHDNFGIVEGLMTTVHAITATQK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	649.595441	2594.35266	1.1158	0.00072485	0.92871	0.00060329	2.0446	0.0013281	649.846801223853	19.49	0.44336	19.49	19.428	19.871	0	597	415	0.924688525662974	0.279781078471184	0.924688525662974	744.653768055321	0	225.308337382877						4676	51	8	NaN	NaN	NaN	1.334E-13	1	37226	152.02	147.43	1	5721900			20610	513	17391	17886	20610	20610		
VIHDNFGIVEGLMTTVHAITATQK	24	Unmodified	_VIHDNFGIVEGLMTTVHAITATQK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	865.791496	2594.35266	2.3888	0.0020682	0.91335	0.00079077	3.3022	0.002859	866.12697932359	19.49	0.39905	19.49	19.428	19.827	0	264	403	1.14797626962532	0.268388069860331	1.14797626962532	693.352355254645	0	162.100476537415						7464	46	7	NaN	NaN	NaN	1.7175E-92	1	37227	375.77	368.12	1	8403500			20611	513	17391	17886	20611	20611		
VIHDNFGIVEGLMTTVHAITATQK	24	Oxidation (M)	_VIHDNFGIVEGLM(Oxidation (M))TTVHAITATQK_	VIHDNFGIVEGLM(1)TTVHAITATQK	VIHDNFGIVEGLM(160)TTVHAITATQK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	653.59417	2610.34757	0.22813	0.0001491	0.92368	0.00060371	1.1518	0.00075281	653.846099641897	17.114	0.11526	17.114	17.034	17.149	0	603	49	0.920633820089869	0.0324466467014676	0.920633820089869	741.364314131308	0	26.1285056585758						921	14	8	NaN	NaN	NaN	2.485E-13	1	37278	160.81	154.97	1	1703000			20612	513	17391	17887	20612	20612	92	
VIHDNFGIVEGLMTTVHAITATQK	24	Oxidation (M)	_VIHDNFGIVEGLM(Oxidation (M))TTVHAITATQK_	VIHDNFGIVEGLM(1)TTVHAITATQK	VIHDNFGIVEGLM(250)TTVHAITATQK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	871.123134	2610.34757	1.7475	0.0015223	1.0858	0.00094586	2.8333	0.0024682	871.458955356402	17.193	0.39902	17.193	17.043	17.442	0	249	259	1.15795408347545	0.171844275723789	1.15795408347545	699.355896994579	0	103.786764352079						3930	46	8	NaN	NaN	NaN	2.9431E-42	1	37281	249.33	218.66	1	3031600			20613	513	17391	17887	20613	20613	92	
VIHELANER	9	Unmodified	_VIHELANER_			0	0	0	Q02880	Q02880	Q02880	TOP2B	DNA topoisomerase 2-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	360.864729	1079.57236	-0.066235	-2.3902E-05	1.9524	0.00070456	1.8862	0.00068065	360.865186602317	3.04	0.044328	3.04	3.0134	3.0577	0	897	16	0.720567078607086	0.0102765621039947	0.720567078607086	438.443374047957	0	6.25297865564255						44	6	2	NaN	NaN	NaN	0.037664	1	6201	30.593	16.945	1	6886.1			20614	1534	17392	17888	20614	20614		
VIHLSNLPHSGYSDSAVLK	19	Unmodified	_VIHLSNLPHSGYSDSAVLK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	510.024549	2036.06909	-0.0096163	-4.9046E-06	0.65652	0.00033484	0.64691	0.00032994	510.27502028608	9.2479	0.2306	9.2479	9.1592	9.3898	0	693	67	0.85967808974117	0.0448002364855021	0.85967808974117	693.310336380766	0	36.1303462288458						744	27	5	NaN	NaN	NaN	0.0012744	1	32269	67.887	61.365	1	397240			20615	1062	17393	17889	20615	20615		
VIHLSNLPHSGYSDSAVLK	19	Unmodified	_VIHLSNLPHSGYSDSAVLK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.04182	2036.06909	1.0718	0.0010922	0.43356	0.00044182	1.5054	0.0015341	1019.54374694692	9.2568	0.053122	9.2568	9.2303	9.2834	0	120	43	1.2434810169581	0.0277715403229193	1.2434810169581	501.422581995613	0	11.1986248803206						206	7	3	NaN	NaN	NaN	7.2023E-05	1	32270	45.17	43.459	1	42161			20616	1062	17393	17889	20616	20616		
VIHLSNLPHSGYSDSAVLK	19	Unmodified	_VIHLSNLPHSGYSDSAVLK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.696973	2036.06909	0.99365	0.00067538	0.9937	0.00067542	1.9874	0.0013508	680.03205035689	9.2479	0.14195	9.2479	9.2036	9.3455	0	594	112	0.926715457081489	0.074903145199346	0.926715457081489	560.532681673316	0	45.3058816743825						750	17	5	NaN	NaN	NaN	8.4308E-11	1	32271	149.14	127	1	293720			20617	1062	17393	17889	20617	20617		
VIHSILNSPYAK	12	Unmodified	_VIHSILNSPYAK_			0	0	0	P23258;Q9NRH3	P23258	P23258	TUBG1;TUBG2	Tubulin gamma-1 chain;Tubulin gamma-2 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.922355	1340.74524	-0.5448	-0.00024403	-1.3551	-0.000607	-1.8999	-0.00085103	447.921955592894	7.3408	0.133	7.3408	7.2875	7.4205	0	813	25	0.778007628350577	0.0163795890035051	0.778007628350577	472.232426447247	0	9.94202727257624						228	16	4	NaN	NaN	NaN	0.019725	1	13636	53.517	49.624	1	66284			20618	815	17394	17890	20618	20618		
VIHVVTSEMDNYEPGVYTEK	20	Unmodified	_VIHVVTSEMDNYEPGVYTEK_			0	0	0	P35221	P35221	P35221	CTNNA1	Catenin alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.703464	2309.08856	1.5532	0.0011971	1.3282	0.0010237	2.8814	0.0022207	771.038822930266	10.516	0.062078	10.516	10.489	10.551	0	525	43	0.973257487423603	0.0282887809416775	0.973257487423603	588.212861709177	0	17.0970426706059						247	8	4	NaN	NaN	NaN	7.3679E-11	1	35708	109.47	106.75	1	48557			20619	959	17395	17891	20619	20619		
VIILGDSGVGK	11	Unmodified	_VIILGDSGVGK_			0	0	0	P51149	P51149	P51149	RAB7A	Ras-related protein Rab-7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.316232	1056.61791	0.50096	0.00026517	-0.43563	-0.00023059	0.065332	3.4581E-05	529.315889512317	9.0085	0.11528	9.0085	8.9553	9.0706	0	645	34	0.892219381832517	0.0223488632159498	0.892219381832517	362.029067404887	0	9.0683281179252						261	14	3	NaN	NaN	NaN	0.0057948	1	5641	50.834	25.581	1	110540			20620	1180	17396	17892	20620	20620		
VIISAPSADAPMFVMGVNHEK	21	Unmodified	_VIISAPSADAPMFVMGVNHEK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1107.0583	2212.10205	1.2209	0.0013517	-0.65568	-0.00072587	0.56526	0.00062578	1107.55947657032	14.01	0.19506	14.01	13.939	14.134	0	81	115	1.2692388538616	0.0752974090318537	1.2692388538616	511.533269520484	0	30.3466362625905						1925	23	6	NaN	NaN	NaN	3.4603E-16	1	34811	153.26	150.01	1	803040			20621	513	17397	17893	20621	20621		
VIISAPSADAPMFVMGVNHEK	21	Unmodified	_VIISAPSADAPMFVMGVNHEK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	738.374625	2212.10205	1.5727	0.0011612	2.2527	0.0016633	3.8254	0.0028246	738.710830325603	14.01	0.59407	14.01	13.841	14.435	0	456	229	1.01965166402748	0.153356449397101	1.01965166402748	616.413833464028	0	92.7091478337957						3165	68	6	NaN	NaN	NaN	2.4087E-08	1	34813	155.28	142.9	1	4468600			20622	513	17397	17893	20622	20622		
VIISAPSADAPMFVMGVNHEK	21	Oxidation (M)	_VIISAPSADAPMFVM(Oxidation (M))GVNHEK_	VIISAPSADAPM(0.17)FVM(0.83)GVNHEK	VIISAPSADAPM(-6.9)FVM(6.9)GVNHEK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.706263	2228.09696	1.4024	0.001043	0.042335	3.1485E-05	1.4447	0.0010745	744.041246506254	12.272	0.23055	12.272	12.201	12.431	0	456	55	1.01965166402748	0.0362608440937691	1.01965166402748	616.386247550329	0	21.9199226681824						1159	27	6	NaN	NaN	NaN	9.1341E-08	1	34970	123.92	117.72	2	1042500			20623	513	17397	17894	20623	20623	93;94	
VIISAPSADAPMFVMGVNHEK	21	2 Oxidation (M)	_VIISAPSADAPM(Oxidation (M))FVM(Oxidation (M))GVNHEK_	VIISAPSADAPM(1)FVM(1)GVNHEK	VIISAPSADAPM(47)FVM(47)GVNHEK	0	2	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	749.037901	2244.09187	1.8759	0.0014051	-1.0999	-0.00082385	0.77606	0.0005813	749.37140115357	10.879	0.20395	10.879	10.809	11.012	0	471	43	1.00957851518677	0.0282184646673942	1.00957851518677	610.270031965118	0	17.0574978325399						809	24	6	NaN	NaN	NaN	0.00098895	1	35142	47.491	44.585	1	360680			20624	513	17397	17895	20624	20624	93;94	
VILDEGHAIR	10	Unmodified	_VILDEGHAIR_			0	0	0	Q14527	Q14527	Q14527	HLTF	Helicase-like transcription factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.81693	1121.61931	1.1884	0.00066769	0.4571	0.00025681	1.6455	0.0009245	561.817153381439	5.4962	0.088649	5.4962	5.4608	5.5494	0	579	25	0.936845902828289	0.016203101643964	0.936845902828289	379.853265170545	0	6.56970484342077						127	11	3	NaN	NaN	NaN	0.00077756	1	7321	88.921	73.339	1	24379			20625	1754	17398	17896	20625	20625		
VILDLTPNYR	10	Unmodified	_VILDLTPNYR_			0	0	0	P08195	P08195	P08195	SLC3A2	4F2 cell-surface antigen heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.340238	1202.66592	0.63368	0.00038169	1.1367	0.00068467	1.7704	0.0010664	602.341206637163	11.846	0.28377	11.846	11.74	12.024	0	549	88	0.957085760909907	0.0587078334097211	0.957085760909907	387.742054236135	0	23.7841757298705						1546	33	5	NaN	NaN	NaN	1.4751E-10	1	9552	176.75	140.54	1	892110			20626	576	17399	17897	20626	20626		
VILDYNTAHNK	11	Unmodified	_VILDYNTAHNK_			0	0	0	Q14258	Q14258	Q14258	TRIM25	E3 ubiquitin/ISG15 ligase TRIM25	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.338227	1286.6619	2.2239	0.001433	-0.010758	-6.9318E-06	2.2132	0.001426	644.338383918456	4.8223	0.14189	4.8223	4.7869	4.9287	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	403.808114811965	0	7.34933568413345						239	17	4	NaN	NaN	NaN	0.0028184	1	11965	74.424	54.19	1	62268			20627	1745	17400	17898	20627	20627		
VILEDVAMLHIK	12	Unmodified	_VILEDVAMLHIK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.935496	1379.78466	-1.9411	-0.00089474	-0.85865	-0.00039578	-2.7998	-0.0012905	460.935404881102	13.859	0.062076	13.859	13.832	13.895	0	780	16	0.800512323802183	0.0102222892682338	0.800512323802183	485.752161104737	0	6.20290151174402						68	8	3	NaN	NaN	NaN	0.06324	1	14829	20.183	18.926	1	12222			20628	565	17401	17899	20628	20628		
VILEDVAMLHIK	12	Unmodified	_VILEDVAMLHIK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.899605	1379.78466	1.9449	0.0013437	0.045747	3.1607E-05	1.9906	0.0013753	690.900024405716	13.859	0.12416	13.859	13.824	13.948	0	390	31	1.06389100039157	0.0200782861239661	1.06389100039157	430.383620315237	0	8.12241617663585						323	15	4	NaN	NaN	NaN	0.00062471	1	14830	72.365	66.869	1	113680			20629	565	17401	17899	20629	20629		
VILEDVAMLHIKPDQFTYTSDHFETIMK	28	Unmodified	_VILEDVAMLHIKPDQFTYTSDHFETIMK_			0	0	1	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	831.168807	3320.64612	0.8819	0.000733	0.76351	0.00063461	1.6454	0.0013676	831.420283505206	16.768	0.15073	16.768	16.706	16.856	0	390	34	1.06389100039157	0.0220906848842135	1.06389100039157	855.755108729732	0	17.7689410268971						520	18	6	NaN	NaN	NaN	0.018883	1	38562	21.668	20.197	1	138350			20630	565	17402	17900	20630	20630		
VILESEVIAEAVGVK	15	Unmodified	_VILESEVIAEAVGVK_			0	0	0	O15226	O15226	O15226	NKRF	NF-kappa-B-repressing factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.450714	1554.88687	1.3954	0.0010863	0.98473	0.00076657	2.3801	0.0018528	778.451610796323	16.041	0.11525	16.041	15.987	16.103	0	279	43	1.13799159301878	0.0279821102463456	1.13799159301878	459.845382432616	0	11.3071522377144						283	14	3	NaN	NaN	NaN	1.7833E-06	1	20219	71.219	59.201	1	65378			20631	156	17403	17901	20631	20631		
VILGSEAAQQHPEEVR	16	Unmodified	_VILGSEAAQQHPEEVR_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.957757	1761.90096	3.5858	0.0031625	-2.1803	-0.001923	1.4054	0.0012395	881.956044291779	5.6825	0.097477	5.6825	5.6471	5.7445	0	264	55	1.14797626962532	0.0359226119970966	1.14797626962532	463.398678323028	0	14.5007273772293						403	12	4	NaN	NaN	NaN	9.8663E-14	1	26201	144.51	119.83	1	109700			20632	3109	17404	17902	20632	20632		
VILGSEAAQQHPEEVR	16	Unmodified	_VILGSEAAQQHPEEVR_			0	0	0	Q9NY33	Q9NY33	Q9NY33	DPP3	Dipeptidyl peptidase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	588.307597	1761.90096	1.6902	0.00099434	-0.15547	-9.1462E-05	1.5347	0.00090288	588.306897226057	5.6825	0.15967	5.6825	5.6115	5.7711	0	621	34	0.908462957275599	0.0223209853619647	0.908462957275599	550.070580933131	0	13.5152647521005						305	19	4	NaN	NaN	NaN	0.00097506	1	26202	78.864	62.576	1	97566			20633	3109	17404	17902	20633	20633		
VILPVSVDEYQVGQLYSVAEASK	23	Unmodified	_VILPVSVDEYQVGQLYSVAEASK_			0	0	0	Q00169	Q00169	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	832.107367	2493.30027	1.6442	0.0013681	-0.25653	-0.00021346	1.3877	0.0011547	832.441069091591	18.009	0.08868	18.009	17.956	18.045	0	348	52	1.09197348738011	0.0340837206319853	1.09197348738011	659.67033491527	0	20.590261269442						325	11	4	NaN	NaN	NaN	0.00062241	1	36797	66.913	66.699	1	69908			20634	1496	17405	17903	20634	20634		
VILQDFTGVPAVVDFAAMR	19	Unmodified	_VILQDFTGVPAVVDFAAMR_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.04552	2048.07648	1.1705	0.0011998	-0.14015	-0.00014366	1.0304	0.0010562	1025.54690385526	19.765	0.053196	19.765	19.729	19.782	0	150	43	1.22363604450103	0.0278096485881287	1.22363604450103	493.400684183111	0	11.2135464641938						209	7	4	NaN	NaN	NaN	0.00022275	1	32513	48.892	38.134	1	33754			20635	793	17406	17904	20635	20635		
VILTSPLIRDELEK	14	Unmodified	_VILTSPLIRDELEK_			0	0	1	Q96SI9	Q96SI9	Q96SI9	STRBP	Spermatid perinuclear RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.653934	1624.93997	-0.23271	-0.00012628	-0.14342	-7.7827E-05	-0.37613	-0.00020411	542.653967052825	12.281	0.097558	12.281	12.227	12.325	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	527.039676967373	0	12.3279831683594						240	12	4	NaN	NaN	NaN	0.029761	1	22343	30.068	23.321	1	63579			20636	2622	17407	17905	20636	20636		
VIMGEEVEPVGLMTGSGVVGVK	22	Unmodified	_VIMGEEVEPVGLMTGSGVVGVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1094.07361	2186.13268	0.15148	0.00016573	-0.14924	-0.00016328	0.0022447	2.4558E-06	1094.57552789989	15.908	0.097572	15.908	15.863	15.961	0	117	118	1.24546401832526	0.0772948105772264	1.24546401832526	501.988660982713	0	31.1539457516798						731	12	4	NaN	NaN	NaN	0.00098097	1	34535	41.284	40.013	1	160990			20637	867	17408	17906	20637	20637		
VIMGEEVEPVGLMTGSGVVGVK	22	Unmodified	_VIMGEEVEPVGLMTGSGVVGVK_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.718169	2186.13268	0.29898	0.00021817	2.2842	0.0016668	2.5832	0.001885	729.719417088068	15.908	0.062074	15.908	15.881	15.943	0	405	22	1.05384839605172	0.0140654662382922	1.05384839605172	637.134101258325	0	8.50367873034531						84	8	2	NaN	NaN	NaN	0.013651	1	34536	46.206	45.808	1	27799			20638	867	17408	17906	20638	20638		
VIMITGDNK	9	Unmodified	_VIMITGDNK_			0	0	0	P16615;O14983	P16615	P16615	ATP2A2;ATP2A1	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2;Sarcoplasmic/endoplasmic reticulum calcium ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.76806	989.521567	0.1285	6.3706E-05	-1.6598	-0.00082287	-1.5313	-0.00075916	495.767201776371	5.8864	0.23947	5.8864	5.8332	6.0727	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	346.64798450111	0	7.4445882573159						220	28	2	NaN	NaN	NaN	0.061186	1	4044	30.593	16.057	1	111180			20639	730	17409	17907	20639	20639		
VIMVGSGGVGK	11	Unmodified	_VIMVGSGGVGK_			0	0	0	P11234;P11233	P11234	P11234	RALB;RALA	Ras-related protein Ral-B;Ras-related protein Ral-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.283877	1002.5532	0.37973	0.00019073	-1.2355	-0.00062055	-0.85573	-0.00042982	502.28357151658	6.1081	0.14187	6.1081	6.0638	6.2057	0	714	43	0.845418525735192	0.0285250764845424	0.845418525735192	343.276933657341	0	11.5824298733453						299	17	3	NaN	NaN	NaN	0.0057948	1	4359	50.834	27.259	1	104510			20640	648	17410	17908	20640	20640		
VIMVTGDHPITAK	13	Unmodified	_VIMVTGDHPITAK_			0	0	0	P05023;P13637;P50993;Q13733;P54707;P20648	P05023	P05023	ATP1A1;ATP1A3;ATP1A2;ATP1A4;ATP12A;ATP4A	Sodium/potassium-transporting ATPase subunit alpha-1;Sodium/potassium-transporting ATPase subunit alpha-3;Sodium/potassium-transporting ATPase subunit alpha-2;Sodium/potassium-transporting ATPase subunit alpha-4;Potassium-transporting ATPase alpha chain 2;Potassium-transporting ATPase alpha chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.255117	1380.74352	-0.72772	-0.00033567	-0.71327	-0.000329	-1.441	-0.00066467	461.254217646026	6.3742	0.16846	6.3742	6.3299	6.4983	0	747	43	0.822982596624503	0.0285846129737781	0.822982596624503	499.38372238518	0	17.3450696142704						283	20	3	NaN	NaN	NaN	0.045678	1	14862	34.193	24.678	1	109720			20641	522	17411	17909	20641	20641		
VINEEYK	7	Unmodified	_VINEEYK_			0	0	0	Q09028;Q16576	Q09028;Q16576	Q16576	RBBP4;RBBP7	Histone-binding protein RBBP4;Histone-binding protein RBBP7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	447.732	893.449448	0.087617	3.9229E-05	0.36413	0.00016303	0.45175	0.00020226	447.732412167476	2.9336	0.39011	2.9336	2.8627	3.2528	0	774	37	0.804600385996946	0.0245283773242136	0.804600385996946	327.242482574912	0	9.97604180759157						482	45	3	NaN	NaN	NaN	0.036857	1	2227	40.203	23.655	1	105330			20642	1582;1890	17412	17910	20642	20642		
VINEPTAAALAYGLDK	16	Unmodified	_VINEPTAAALAYGLDK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.44342	1644.87229	2.3579	0.0019416	-0.46119	-0.00037976	1.8967	0.0015618	823.443719228149	13.07	0.34583	13.07	12.963	13.309	0	354	223	1.08796502040166	0.147824990469207	1.08796502040166	439.418058645338	0	59.7050172690877						2823	40	5	NaN	NaN	NaN	2.2507E-17	1	22894	131.48	123.92	1	2210500			20643	1007	17413	17911	20643	20643		
VINIDFRDPEESK	13	Unmodified	_VINIDFRDPEESK_			0	0	1	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.266739	1560.77839	-0.35268	-0.00018384	-1.0687	-0.00055709	-1.4214	-0.00074092	521.266115215827	9.78	0.15081	9.78	9.7268	9.8776	0	774	46	0.804600385996946	0.0306583415833394	0.804600385996946	487.671467831008	0	18.5821417705214						462	18	4	NaN	NaN	NaN	0.0060978	1	20364	53.028	44.051	1	153980			20644	1105	17414	17912	20644	20644		
VINLNDNTFTEK	12	Unmodified	_VINLNDNTFTEK_			0	0	0	P46060	P46060	P46060	RANGAP1	Ran GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	704.359356	1406.70416	1.3528	0.00095284	0.50098	0.00035287	1.8538	0.0013057	704.359741632169	9.4608	0.23054	9.4608	9.3987	9.6292	0	456	55	1.01965166402748	0.0362508280266105	1.01965166402748	412.408836352924	0	14.6620285443692						624	27	5	NaN	NaN	NaN	0.00043237	1	15676	71.066	52.559	1	243120			20645	1075	17415	17913	20645	20645		
VINQILTEMDGMSTK	15	Unmodified	_VINQILTEMDGMSTK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.420773	1678.82699	2.7268	0.0022916	-0.1627	-0.00013673	2.5641	0.0021549	840.420196842337	14.435	0.24827	14.435	14.356	14.604	0	333	112	1.10198982404297	0.0741107999863944	1.10198982404297	445.007337297306	0	29.9275447443992						1443	29	5	NaN	NaN	NaN	2.5923E-12	1	23884	191.95	177.49	1	770780			20646	1265	17416	17914	20646	20646		
VINQILTEMDGMSTK	15	Oxidation (M)	_VINQILTEMDGM(Oxidation (M))STK_	VINQILTEM(0.115)DGM(0.885)STK	VINQILTEM(-8.9)DGM(8.9)STK	0	1	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	848.41823	1694.82191	2.0297	0.001722	-8.8868	-0.0075397	-6.8571	-0.0058177	848.41057287806	12.449	0.19505	12.449	12.369	12.564	0	336	97	1.09998710857178	0.0641620688168467	1.09998710857178	444.164307392727	0	25.908031680409						774	23	5	NaN	NaN	NaN	0.0018142	1	24335	93.162	82.912	2	212490			20647	1265	17416	17915	20647	20647	450	
VINSVDIK	8	Unmodified	_VINSVDIK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.263468	886.512382	-1.9549	-0.00086851	0.73945	0.00032851	-1.2155	-0.00054	444.264143079365	5.3366	0.15072	5.3366	5.2923	5.443	0	792	28	0.792332785124922	0.0184103687161689	0.792332785124922	322.291230058368	0	7.48864680441898						149	18	2	NaN	NaN	NaN	0.024664	1	2101	37.722	14.147	1	55980			20648	300	17417	17916	20648	20648		
VIPEDGPAAQNPENVK	16	Unmodified	_VIPEDGPAAQNPENVK_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.425758	1676.83696	3.032	0.0025452	-2.5989	-0.0021816	0.43313	0.00036358	839.423547267974	5.9573	0.32816	5.9573	5.8421	6.1702	0	360	46	1.08395544855938	0.0300780138159316	1.08395544855938	437.728927792937	0	12.1462710993214						510	38	4	NaN	NaN	NaN	0.0046782	1	23816	59.67	55.143	1	127670			20649	1526	17418	17917	20649	20649		
VIPPAGQTEDAEPISEPEK	19	Unmodified	_VIPPAGQTEDAEPISEPEK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1003.99948	2005.98442	2.5695	0.0025798	-1.5005	-0.0015065	1.069	0.0010733	1003.99815212244	7.4649	0.46117	7.4649	7.3674	7.8285	0	219	103	1.17788915118882	0.0677793147011738	1.17788915118882	475.021496688811	0	27.3341778225889						2245	53	4	NaN	NaN	NaN	5.196E-05	1	31737	58.794	54.487	1	525560			20650	3410	17419	17918	20650	20650		
VIQCFAETGQVQK	13	Unmodified	_VIQCFAETGQVQK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.382308	1506.75006	2.3664	0.0017852	-1.1304	-0.00085272	1.236	0.00093244	754.381911049323	6.7377	0.23054	6.7377	6.6757	6.9062	0	438	70	1.03173026378327	0.0462597941637368	1.03173026378327	417.024310489379	0	18.6981611780706						947	27	5	NaN	NaN	NaN	2.0652E-17	1	18701	215.79	190.97	1	711660			20651	1503	17420	17919	20651	20651		
VIQCYIQYGNEEQR	14	Unmodified	_VIQCYIQYGNEEQR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.422693	1798.83083	2.2881	0.0020603	-1.1665	-0.0010504	1.1216	0.0010099	900.421338211146	8.4672	0.088693	8.4672	8.4318	8.5205	0	327	34	1.10599442759226	0.0220207732442941	1.10599442759226	446.380474632273	0	8.88760645381979						194	11	4	NaN	NaN	NaN	0.044203	1	27182	35.845	34.371	1	30994			20652	1842	17421	17920	20652	20652		
VIQEIWPVLSETLNK	15	Unmodified	_VIQEIWPVLSETLNK_			0	0	0	Q9Y5L0	Q9Y5L0	Q9Y5L0	TNPO3	Transportin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.99582	1767.97709	1.3694	0.0012119	0.8527	0.00075464	2.2221	0.0019666	885.498244606961	18.16	0.25711	18.16	18.062	18.319	0	279	40	1.13799159301878	0.0259637344402126	1.13799159301878	459.355869247246	0	10.4803883225978						336	30	2	NaN	NaN	NaN	0.019088	1	26362	54.199	40.421	1	71690			20653	3437	17422	17921	20653	20653		
VIQENEHALQK	11	Unmodified	_VIQENEHALQK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.848958	1307.68336	2.3853	0.001562	-1.8378	-0.0012035	0.54754	0.00035856	654.847631807812	2.9956	0.062063	2.9956	2.9779	3.04	0	516	22	0.979317271586824	0.014137541397	0.979317271586824	396.38702357009	0	5.72229053601336						81	8	3	NaN	NaN	NaN	0.0067046	1	12598	68.49	62.227	1	13207			20654	3042	17423	17922	20654	20654		
VIQGDGVDINTLQEIVEGMK	20	Unmodified	_VIQGDGVDINTLQEIVEGMK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1079.55664	2157.09873	1.0329	0.0011151	0.079923	8.6281E-05	1.1128	0.0012013	1080.05854100039	19.49	0.10639	19.49	19.454	19.561	0	126	55	1.23951419873743	0.0357062714970591	1.23951419873743	499.633022645226	0	14.3927615945333						629	13	6	NaN	NaN	NaN	2.7129E-22	1	34135	195.46	165.48	1	276500			20655	1067	17424	17923	20655	20655		
VIQGDGVDINTLQEIVEGMK	20	Oxidation (M)	_VIQGDGVDINTLQEIVEGM(Oxidation (M))K_	VIQGDGVDINTLQEIVEGM(1)K	VIQGDGVDINTLQEIVEGM(75)K	0	1	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1087.5541	2173.09365	0.66226	0.00072024	-0.24718	-0.00026883	0.41507	0.00045141	1088.056169081	17.513	0.15962	17.513	17.442	17.601	0	123	43	1.24149774378079	0.0277753476234135	1.24149774378079	500.408998666056	0	11.1953758768071						537	19	4	NaN	NaN	NaN	0.0047332	1	34360	74.62	70.77	1	121690			20656	1067	17424	17924	20656	20656	381	
VIQHNALEDR	10	Unmodified	_VIQHNALEDR_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	398.879038	1193.61528	-1.2257	-0.00048891	-2.0802	-0.00082976	-3.3059	-0.0013187	398.878036435525	2.8892	0.1241	2.8892	2.8627	2.9868	0	864	22	0.743159753061487	0.014365130472816	0.743159753061487	451.646527612884	0	8.7302377046467						145	15	3	NaN	NaN	NaN	0.054722	1	9262	22.044	8.7698	1	25373			20657	255	17425	17925	20657	20657		
VIQPHGGGSNPLEGTQHLQDVPYVMVR	27	Unmodified	_VIQPHGGGSNPLEGTQHLQDVPYVMVR_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	732.875079	2927.47121	1.1975	0.00087764	-0.17801	-0.00013046	1.0195	0.00074718	733.37559774158	12.236	0.18626	12.236	12.148	12.334	0	438	40	1.03173026378327	0.0261648835876145	1.03173026378327	830.351062935114	0	21.0578672170394						538	22	5	NaN	NaN	NaN	5.8036E-05	1	38116	78.75	72.703	1	163320			20658	1722	17426	17926	20658	20658		
VIQQESYTYK	10	Unmodified	_VIQQESYTYK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.819335	1257.62412	2.2653	0.0014267	-3.8665	-0.0024352	-1.6013	-0.0010085	629.81694374664	4.6716	0.26601	4.6716	4.5475	4.8135	0	549	70	0.957085760909907	0.0465291454574099	0.957085760909907	387.54980282566	0	18.8409042158586						717	31	4	NaN	NaN	NaN	0.00094314	1	11134	83.358	65.022	1	332730			20659	1304	17427	17927	20659	20659		
VIQQLEGAFALVFK	14	Unmodified	_VIQQLEGAFALVFK_			0	0	0	Q06210;O94808	Q06210	Q06210	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.950684	1561.88681	0.89722	0.00070159	0.25556	0.00019984	1.1528	0.00090142	781.950600339865	19.614	0.053196	19.614	19.587	19.641	0	285	28	1.13399579921816	0.0179823106306443	1.13399579921816	458.212618639267	0	7.26609538495046						105	7	4	NaN	NaN	NaN	1.0452E-07	1	20414	125.17	102.27	1	23410			20660	1558	17428	17928	20660	20660		
VIQQLEGAFALVFK	14	Unmodified	_VIQQLEGAFALVFK_			0	0	0	Q06210;O94808	Q06210	Q06210	GFPT1;GFPT2	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1;Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.950684	1561.88681	0.92532	0.00072355	0.46237	0.00036155	1.3877	0.0010851	781.950728217392	19.623	0.079803	19.623	19.579	19.658	0	369	34	1.07793901817685	0.0220663300779218	1.07793901817685	435.561806925573	0	8.9163212750305						211	10	4	NaN	NaN	NaN	1.1155E-07	1	20415	124.46	108.17	1	52950			20661	1558	17428	17928	20661	20661		
VIQQSLEQEEAEHK	14	Unmodified	_VIQQSLEQEEAEHK_			0	0	0	O75116	O75116	O75116	ROCK2	Rho-associated protein kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	556.612686	1666.81623	-0.04575	-2.5465E-05	2.1725	0.0012092	2.1267	0.0011838	556.614155608158	4.6273	0.097525	4.6273	4.6007	4.6982	0	738	25	0.829104889055312	0.0163227098451795	0.829104889055312	502.242858290324	0	9.88772899051099						156	12	3	NaN	NaN	NaN	3.1417E-05	1	23538	88.734	77.762	1	50145			20662	301	17429	17929	20662	20662		
VIQWCTHHK	9	Unmodified	_VIQWCTHHK_			0	0	0	P63208	P63208	P63208	SKP1	S-phase kinase-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.8033	1207.59205	1.9648	0.0011883	-5.8423	-0.0035334	-3.8775	-0.0023451	605.300922035293	2.9336	0.24828	2.9336	2.8981	3.1464	0	603	31	0.920633820089869	0.0202763400038137	0.920633820089869	372.95712931163	0	8.21412965258088						399	29	3	NaN	NaN	NaN	0.00016301	1	9667	106.93	79.19	1	81288			20663	1431	17430	17930	20663	20663		
VIQYLAYVASSHK	13	Unmodified	_VIQYLAYVASSHK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.604915	1477.79291	-0.70752	-0.00034923	1.4565	0.00071892	0.74894	0.00036968	493.605610472598	10.427	0.17735	10.427	10.365	10.543	0	762	52	0.812773098473386	0.0347219621408564	0.812773098473386	492.867828882149	0	21.055492765491						517	21	4	NaN	NaN	NaN	7.9635E-05	1	17832	101.48	88.307	1	141400			20664	972	17431	17931	20664	20664		
VIQYLAYVASSHK	13	Unmodified	_VIQYLAYVASSHK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.903734	1477.79291	2.3757	0.0017578	-0.2136	-0.00015805	2.1621	0.0015997	739.903844127816	10.418	0.1419	10.418	10.374	10.516	0	354	34	1.08796502040166	0.0220511287712513	1.08796502040166	439.832761147895	0	8.91463298177223						360	17	4	NaN	NaN	NaN	3.8736E-05	1	17833	96.946	71.332	1	141240			20665	972	17431	17931	20665	20665		
VIRPLDQPSSFDATPYIK	18	Unmodified	_VIRPLDQPSSFDATPYIK_			0	0	1	Q86VP6	Q86VP6	Q86VP6	CAND1	Cullin-associated NEDD8-dissociated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.033474	2046.07859	0.39954	0.0002729	-0.87268	-0.00059607	-0.47314	-0.00032317	683.367226247749	11.873	0.17736	11.873	11.82	11.997	0	597	52	0.924688525662974	0.0344435264465663	0.924688525662974	559.288166802477	0	20.832806107009						772	21	4	NaN	NaN	NaN	2.6366E-05	1	32466	85.081	79.693	1	264300			20666	2175	17432	17932	20666	20666		
VISESPPDQWEAR	13	Unmodified	_VISESPPDQWEAR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.367712	1512.72087	2.044	0.0015481	-1.3644	-0.0010334	0.67959	0.0005147	757.36671730763	8.1213	0.37256	8.1213	7.864	8.2366	0	447	49	1.02569221487577	0.0322229556332772	1.02569221487577	414.568843181079	0	13.0240175824878						806	43	3	NaN	NaN	NaN	0.0056147	1	18881	65.879	59.851	1	226460			20667	2420	17433	17933	20667	20667		
VISFEEQVASIR	12	Unmodified	_VISFEEQVASIR_			0	0	0	Q9BT78	Q9BT78	Q9BT78	COPS4	COP9 signalosome complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.372266	1376.72998	0.76453	0.00052705	-2.3946	-0.0016507	-1.63	-0.0011237	689.370335868615	12.635	0.14189	12.635	12.547	12.689	0	498	49	0.991429299781895	0.032276430046501	0.991429299781895	401.078995657086	0	13.0573084225921						292	17	2	NaN	NaN	NaN	0.0061502	1	14711	39.293	31.735	1	99892			20668	2731	17434	17934	20668	20668		
VISGTTLGYLSPK	13	Unmodified	_VISGTTLGYLSPK_			0	0	0	Q9NUL3	Q9NUL3	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.37956	1334.74457	1.8764	0.0012541	0.24137	0.00016133	2.1177	0.0014155	668.379659327067	10.782	0.12413	10.782	10.729	10.853	0	417	43	1.04580932352505	0.0281367598695683	1.04580932352505	423.210504856854	0	11.3861791835047						218	15	3	NaN	NaN	NaN	0.069702	1	13442	35.33	24.628	1	43840			20669	3052	17435	17935	20669	20669		
VISGVLQLGNIVFK	14	Unmodified	_VISGVLQLGNIVFK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.953227	1485.8919	1.4505	0.0010791	0.64226	0.00047781	2.0927	0.0015569	743.95366864676	18.381	0.13299	18.381	18.346	18.479	0	420	154	1.04379886199097	0.102279631274186	1.04379886199097	421.956321170577	0	41.346602793587						1148	16	4	NaN	NaN	NaN	1.4519E-11	1	18115	163.59	147.71	1	488900			20670	972	17436	17936	20670	20670		
VISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEK	36	Unmodified	_VISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	936.224265	3740.86795	2.1749	0.0020362	1.0303	0.00096464	3.2052	0.0030008	936.727129942486	12.236	0.29263	12.236	12.139	12.431	0	216	145	1.17988115188462	0.0958465623492362	1.17988115188462	948.608340408916	0	77.0593277965164						3534	34	8	NaN	NaN	NaN	1.3167E-31	1	38719	171.83	167.6	1	1539300			20671	922	17437	17937	20671	20671		
VISHAISEHVEDAGVHSGDATLMLPTQTISQGAIEK	36	Oxidation (M)	_VISHAISEHVEDAGVHSGDATLM(Oxidation (M))LPTQTISQGAIEK_	VISHAISEHVEDAGVHSGDATLM(1)LPTQTISQGAIEK	VISHAISEHVEDAGVHSGDATLM(130)LPTQTISQGAIEK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	940.222993	3756.86287	1.8932	0.0017801	1.3024	0.0012246	3.1957	0.0030046	940.474919704823	11.589	0.16854	11.589	11.509	11.678	0	225	70	1.17390432875292	0.0458727394950837	1.17390432875292	943.788153583291	0	36.880474027952						1123	20	7	NaN	NaN	NaN	5.8648E-12	1	38726	132.83	116.23	1	429650			20672	922	17437	17938	20672	20672	319	
VISLEDFMEK	10	Unmodified	_VISLEDFMEK_			0	0	0	Q9H488	Q9H488	Q9H488	POFUT1	GDP-fucose protein O-fucosyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.804839	1209.59513	0.53439	0.00032374	-1.5048	-0.00091162	-0.97042	-0.00058788	605.803751105259	15.411	0.17747	15.411	15.358	15.535	0	579	70	0.936845902828289	0.0465936234393901	0.936845902828289	379.517671619284	0	18.8751463038251						586	21	3	NaN	NaN	NaN	0.0043715	1	9714	63.397	51.331	1	144320			20673	2890	17438	17939	20673	20673		
VISTMSVGIDHLALDEIK	18	Unmodified	_VISTMSVGIDHLALDEIK_			0	0	0	Q9UBQ7	Q9UBQ7	Q9UBQ7	GRHPR	Glyoxylate reductase/hydroxypyruvate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.021708	1940.02886	-0.32705	-0.00031757	1.8227	0.0017699	1.4957	0.0014523	971.524792747984	14.772	0.035463	14.772	14.764	14.799	0	60	25	1.28308947459206	0.0158238646987734	1.28308947459206	517.567764172171	0	6.38297050586505						72	5	3	NaN	NaN	NaN	0.0036054	1	30518	48.363	46.653	1	9982.3			20674	3185	17439	17940	20674	20674		
VITDIAGVIPAEK	13	Unmodified	_VITDIAGVIPAEK_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.387385	1324.76022	1.1148	0.00073952	-0.013842	-9.1824E-06	1.1009	0.00073034	663.387322209736	12.573	0.133	12.573	12.485	12.618	0	417	37	1.04580932352505	0.0241305373401517	1.04580932352505	423.243190162635	0	9.76572437675327						291	16	3	NaN	NaN	NaN	0.00052549	1	13146	86.243	64.199	1	70872			20675	964	17440	17941	20675	20675		
VITESTVHLIQLLENYK	17	Unmodified	_VITESTVHLIQLLENYK_			0	0	0	O95361;Q309B1	O95361	O95361	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.373607	1999.09899	0.56388	0.00037632	-1.5159	-0.0010117	-0.95204	-0.00063537	667.371611305304	17.796	0.13298	17.796	17.752	17.885	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	571.630641137958	0	11.0217115736955						292	16	4	NaN	NaN	NaN	0.029499	1	31628	39.166	37.691	1	97997			20676	425	17441	17942	20676	20676		
VITESTVHLIQLLENYK	17	Unmodified	_VITESTVHLIQLLENYK_			0	0	0	O95361;Q309B1	O95361	O95361	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1000.55677	1999.09899	0.44737	0.00044762	0.69509	0.00069548	1.1425	0.0011431	1001.05887768381	17.796	0.079803	17.796	17.77	17.849	0	87	43	1.26527909472281	0.0277297116333894	1.26527909472281	510.276358740121	0	11.1831581982309						238	10	4	NaN	NaN	NaN	8.3518E-05	1	31629	45.654	45.135	1	45968			20677	425	17441	17942	20677	20677		
VITEYLNAQESAK	13	Unmodified	_VITEYLNAQESAK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	733.380288	1464.74602	2.1361	0.0015666	0.032199	2.3614E-05	2.1683	0.0015902	733.380420756872	8.3963	0.23061	8.3963	8.3342	8.5648	0	411	73	1.04982941439551	0.0482544393835054	1.04982941439551	424.45070639762	0	19.5094846860842						1101	27	5	NaN	NaN	NaN	0.00039748	1	17417	81.799	49.659	1	501200			20678	2108	17442	17943	20678	20678		
VITFANQDDYISFR	14	Unmodified	_VITFANQDDYISFR_			0	0	0	Q96G21	Q96G21	Q96G21	IMP4	U3 small nucleolar ribonucleoprotein protein IMP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.917569	1687.82059	2.0982	0.0017728	2.6529	0.0022415	4.7511	0.0040143	844.919966059334	14.285	0.08867	14.285	14.258	14.347	0	315	58	1.11400032671325	0.0379992536574683	1.11400032671325	449.837803106228	0	15.3442511416354						379	11	4	NaN	NaN	NaN	1.5276E-05	1	24142	50.116	47.637	1	108290			20679	2533	17443	17944	20679	20679		
VITIMQNPR	9	Unmodified	_VITIMQNPR_			0	0	0	P62269	P62269	P62269	RPS18	40S ribosomal protein S18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.302601	1070.59065	1.3656	0.00073239	-2.4078	-0.0012913	-1.0422	-0.00055893	536.301822388882	7.3319	0.25715	7.3319	7.2343	7.4915	0	627	70	0.90440375274676	0.0466647041412755	0.90440375274676	366.911410586983	0	18.9316025824739						655	30	4	NaN	NaN	NaN	0.0015359	1	5978	98.009	85.182	1	207200			20680	1378	17444	17945	20680	20680		
VITMFVQR	8	Unmodified	_VITMFVQR_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.281137	992.547722	-0.1703	-8.4685E-05	-1.915	-0.00095229	-2.0853	-0.001037	497.280267105462	9.576	0.16844	9.576	9.5228	9.6913	0	705	49	0.851531465363931	0.0325910336061924	0.851531465363931	345.806238430132	0	13.2351923520415						433	20	4	NaN	NaN	NaN	0.017139	1	4122	38.322	31.56	1	165420			20681	674	17445	17946	20681	20681		
VITYLDHSTQK	11	Unmodified	_VITYLDHSTQK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.845884	1303.67722	1.9381	0.0012653	-0.64085	-0.00041838	1.2972	0.00084688	652.846077947616	4.6982	0.088657	4.6982	4.6627	4.7514	0	501	25	0.98941132619024	0.0161426739918176	0.98941132619024	400.485538776837	0	6.53409489034783						141	11	3	NaN	NaN	NaN	0.0050055	1	12467	59.645	46.372	1	33540			20682	1696	17446	17947	20682	20682		
VIVDANNLTVEIENELNIIHK	21	Unmodified	_VIVDANNLTVEIENELNIIHK_			0	0	0	Q8WWY3	Q8WWY3	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	797.435706	2389.28529	0.92157	0.0007349	0.22179	0.00017686	1.1434	0.00091176	797.770170136901	19.401	0.062095	19.401	19.375	19.437	0	432	28	1.035754240522	0.0181041477634616	1.035754240522	625.858748996767	0	10.939505557981						194	8	4	NaN	NaN	NaN	5.7474E-06	1	36295	70.552	66.793	1	51244			20683	2393	17447	17948	20683	20683		
VIVESASNIPK	11	Unmodified	_VIVESASNIPK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.832246	1155.64994	1.17	0.00067724	0.99402	0.00057537	2.164	0.0012526	578.832920741411	6.5072	0.12415	6.5072	6.4629	6.587	0	546	73	0.959108205975751	0.0485689617606289	0.959108205975751	388.740671474608	0	19.6857150111056						463	15	3	NaN	NaN	NaN	0.0016517	1	8232	57.888	33.767	1	137570			20684	3136	17448	17949	20684	20684		
VIVVGNPANTNCLTASK	17	Unmodified	_VIVVGNPANTNCLTASK_			0	0	0	P40925	P40925	P40925	MDH1	Malate dehydrogenase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.464361	1756.91417	3.168	0.0027861	-2.8172	-0.0024776	0.35082	0.00030853	879.462684831356	9.1592	0.29267	9.1592	9.044	9.3366	0	321	61	1.10999792833052	0.0400295138193232	1.10999792833052	448.078055236885	0	16.1589010631914						1146	34	5	NaN	NaN	NaN	2.4606E-10	1	26074	137.39	130.64	1	527700			20685	1022	17449	17950	20685	20685		
VIYAMAEDGLLFK	13	Unmodified	_VIYAMAEDGLLFK_			0	0	0	P52569;P30825	P52569	P52569	SLC7A2;SLC7A1	Cationic amino acid transporter 2;High affinity cationic amino acid transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.38907	1468.76359	1.2833	0.0009437	0.58145	0.00042759	1.8647	0.0013713	735.389358095287	15.81	0.1153	15.81	15.775	15.89	-1.7764E-15	360	40	1.08395544855938	0.0260676102408008	1.08395544855938	438.236794060751	0	10.5389810586186						295	14	4	NaN	NaN	NaN	0.00028004	1	17550	54.584	47.444	1	67885			20686	1215	17450	17951	20686	20686		
VIYVLPMLTIK	11	Unmodified	_VIYVLPMLTIK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.39871	1288.78287	1.047	0.00067575	-1.734	-0.0011192	-0.68702	-0.0004434	645.39757550041	18.426	0.15967	18.426	18.355	18.515	0	480	91	1.00353128488872	0.060560203509864	1.00353128488872	406.250122249308	0	24.5160170388244						1018	19	4	NaN	NaN	NaN	0.00088533	1	12036	53.517	35.18	1	350920			20687	3161	17451	17952	20687	20687		
VIYVLPMLTIK	11	Oxidation (M)	_VIYVLPM(Oxidation (M))LTIK_	VIYVLPM(1)LTIK	VIYVLPM(53)LTIK	0	1	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.396167	1304.77778	0.82231	0.00053729	0.38438	0.00025115	1.2067	0.00078845	653.396554837556	16.147	0.11527	16.147	16.111	16.227	0	456	34	1.01965166402748	0.0221548084259287	1.01965166402748	412.72231175158	0	8.96755634551312						252	14	3	NaN	NaN	NaN	0.019594	1	12510	52.591	27.77	1	72666			20688	3161	17451	17953	20688	20688	637	
VKDDIESLHDK	11	Unmodified	_VKDDIESLHDK_			0	0	1	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	433.557741	1297.6514	-1.0272	-0.00044534	2.072	0.00089832	1.0448	0.00045298	433.558769215423	3.1198	0.12415	3.1198	3.0932	3.2173	0	810	22	0.78005493425781	0.0143291466309899	0.78005493425781	473.635224475816	0	8.70039824512247						138	15	3	NaN	NaN	NaN	0.069687	1	12290	28.328	10.858	1	25504			20689	1737	17452	17954	20689	20689		
VKPAPDETSFSEALLK	16	Unmodified	_VKPAPDETSFSEALLK_			0	0	1	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.976965	1730.90907	-1.6082	-0.00092951	0.18299	0.00010576	-1.4252	-0.00082374	578.311328876517	10.596	0.20393	10.596	10.525	10.729	0	783	43	0.798467866007927	0.0286244075786561	0.798467866007927	483.536508077609	0	17.3343808506331						784	24	4	NaN	NaN	NaN	0.004661	1	25359	40.224	35.697	1	276830			20690	1605	17453	17955	20690	20690		
VLADPSDDTK	10	Unmodified	_VLADPSDDTK_			0	0	0	Q15149;P58107	Q15149;P58107	Q15149	PLEC;EPPK1	Plectin;Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.761486	1059.50842	1.4621	0.00077605	0.23423	0.00012432	1.6964	0.00090037	530.761320877133	3.4213	0.43458	3.4213	3.2794	3.714	0	669	61	0.875957769340875	0.0406879164685867	0.875957769340875	355.418238189806	0	16.5090465465711						643	50	2	NaN	NaN	NaN	0.0050796	1	5703	72.042	66.294	1	399380			20691	1816;1298	17454	17956	20691	20691		
VLAEDEELYGDFEDLETGDVHK	22	Unmodified	_VLAEDEELYGDFEDLETGDVHK_			0	0	0	Q14692	Q14692	Q14692	BMS1	Ribosome biogenesis protein BMS1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	841.718496	2522.13366	1.3338	0.0011227	0.90481	0.0007616	2.2386	0.0018843	842.053498514184	15.287	0.088668	15.287	15.251	15.34	0	408	28	1.0518390438467	0.0180866667822672	1.0518390438467	635.384517134258	0	10.9256146244502						262	11	5	NaN	NaN	NaN	5.4336E-07	1	36927	86.952	81.336	1	58802			20692	1768	17455	17957	20692	20692		
VLAELYVSDR	10	Unmodified	_VLAELYVSDR_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.816596	1163.61864	0.99383	0.00057922	-5.7029	-0.0033237	-4.7091	-0.0027445	582.812773986541	9.6381	0.16847	9.6381	9.6026	9.7711	0	585	64	0.932794566565362	0.0425596847399279	0.932794566565362	378.044861406747	0	17.2486747840565						372	20	3	NaN	NaN	NaN	0.00051154	1	8441	74.269	58.687	1	84494			20693	229	17456	17958	20693	20693		
VLAEPVPLPADPMELK	16	Unmodified	_VLAEPVPLPADPMELK_			0	0	0	Q15526	Q15526	Q15526	SURF1	Surfeit locus protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.973499	1717.93244	1.6865	0.0014504	-4.1885	-0.003602	-2.5019	-0.0021516	860.968686531223	15.837	0.11528	15.837	15.801	15.916	0	294	43	1.12800004657306	0.0279936646882595	1.12800004657306	455.42594573603	0	11.302341036244						235	14	3	NaN	NaN	NaN	0.0011405	1	25006	31.801	28.296	1	59150			20694	1854	17457	17959	20694	20694		
VLAFLSSVAGDALTR	15	Unmodified	_VLAFLSSVAGDALTR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	507.287474	1518.84059	-1.3471	-0.00068337	0.47235	0.00023962	-0.87476	-0.00044375	507.287714876189	17.105	0.070929	17.105	17.069	17.14	0	663	25	0.880024865079826	0.0162661264479727	0.880024865079826	533.515854091541	0	9.86135356966747						138	9	3	NaN	NaN	NaN	0.06968	1	19110	8.3744	5.496	1	36228			20695	2420	17458	17960	20695	20695		
VLAFLSSVAGDALTR	15	Unmodified	_VLAFLSSVAGDALTR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	760.427573	1518.84059	0.79323	0.00060319	0.47877	0.00036407	1.272	0.00096726	760.428120002361	17.105	0.20392	17.105	17.034	17.238	0	402	46	1.05585747106793	0.0301361332726353	1.05585747106793	426.745572397119	0	12.1801112324933						565	24	4	NaN	NaN	NaN	0.00010854	1	19111	88.734	74.279	1	215080			20696	2420	17458	17960	20696	20696		
VLAGETLSVNDPPDVLDR	18	Unmodified	_VLAGETLSVNDPPDVLDR_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.496912	1908.97927	2.1038	0.0020102	-0.51253	-0.00048972	1.5913	0.0015205	955.998516896026	13.256	0.22166	13.256	13.203	13.425	0	219	82	1.17788915118882	0.053791453867615	1.17788915118882	475.187348460735	0	21.7006993462855						1454	26	4	NaN	NaN	NaN	5.1631E-14	1	29821	171.51	165.48	1	578950			20697	1606	17459	17961	20697	20697		
VLAGQTLDINMAGEPK	16	Unmodified	_VLAGQTLDINMAGEPK_			0	0	0	Q9UKM9	Q9UKM9	Q9UKM9	RALY	RNA-binding protein Raly	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.934905	1655.85526	2.6383	0.002187	-0.36359	-0.0003014	2.2747	0.0018856	828.934701964106	11.527	0.20403	11.527	11.438	11.642	0	345	52	1.09397730668811	0.0340602471110185	1.09397730668811	441.821880515039	0	13.7558268689822						499	24	2	NaN	NaN	NaN	0.00019471	1	23226	85.813	75.563	1	177780			20698	3266	17460	17962	20698	20698		
VLAIAQNFV	9	Unmodified	_VLAIAQNFV_			0	0	0	Q6P1L8	Q6P1L8	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.78711	973.559667	-1.1889	-0.00057995	-1.2782	-0.00062351	-2.4672	-0.0012035	487.786583388545	16.049	0.097547	16.049	16.014	16.111	0	729	25	0.835224628594324	0.0163181723166257	0.835224628594324	339.274456875616	0	6.62856297621812						146	12	3	NaN	NaN	NaN	0.0040155	1	3720	61.494	57.679	1	34595			20699	2058	17461	17963	20699	20699		
VLAINILGR	9	Unmodified	_VLAINILGR_			0	0	0	O43747	O43747	O43747	AP1G1	AP-1 complex subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.816202	967.617851	-0.90579	-0.00043914	-0.88174	-0.00042748	-1.7875	-0.00086663	484.81562668083	13.682	0.133	13.682	13.637	13.77	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	343.444661152462	0	8.27950589230545						193	16	3	NaN	NaN	NaN	0.00010979	1	3587	100.75	66.942	1	53567			20700	225	17462	17964	20700	20700		
VLALPEPSPAAPTLR	15	Unmodified	_VLALPEPSPAAPTLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	766.445766	1530.87698	2.3093	0.00177	-0.16465	-0.00012619	2.1447	0.0016438	766.445633843341	12.724	0.20396	12.724	12.644	12.848	0	402	43	1.05585747106793	0.0281251167294885	1.05585747106793	426.715271543726	0	11.3665121962758						675	24	4	NaN	NaN	NaN	0.0014777	1	19474	48.822	41.682	1	365260			20701	1816	17463	17965	20701	20701		
VLALSVETDYTFPLAEK	17	Unmodified	_VLALSVETDYTFPLAEK_			0	0	0	P05388	P05388	P05388	RPLP0	60S acidic ribosomal protein P0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.503674	1894.9928	0.19279	0.00018286	0.99035	0.00093935	1.1831	0.0011222	948.504244654575	16.989	0.19506	16.989	16.936	17.131	0	93	115	1.26131825079847	0.0753180454534117	1.26131825079847	508.871644509342	0	30.3866352737259						1381	23	4	NaN	NaN	NaN	6.5206E-07	1	29503	112.95	80.192	1	274080			20702	530	17464	17966	20702	20702		
VLALSVETDYTFPLAEK	17	Unmodified	_VLALSVETDYTFPLAEK_			0	0	0	P05388	P05388	P05388	RPLP0	60S acidic ribosomal protein P0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	948.503674	1894.9928	1.1384	0.0010798	1.2766	0.0012109	2.415	0.0022907	949.006378699541	16.98	0.24829	16.98	16.918	17.167	0	219	88	1.17788915118882	0.0577522098474965	1.17788915118882	475.212649771102	0	23.2997991738579						962	29	3	NaN	NaN	NaN	4.5192E-19	1	29504	163.09	130.33	1	929280			20703	530	17464	17966	20703	20703		
VLAMSGDPNYLHR	13	Unmodified	_VLAMSGDPNYLHR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	491.582004	1471.72418	-0.94274	-0.00046343	-1.4307	-0.00070328	-2.3734	-0.0011667	491.581192656313	7.8108	0.15964	7.8108	7.7664	7.9261	0	786	49	0.796423123669906	0.0327045075316305	0.796423123669906	482.971621460571	0	19.8328609029285						487	19	4	NaN	NaN	NaN	1.7362E-05	1	17642	81.099	77.996	1	141280			20704	905	17465	17967	20704	20704		
VLAMSGDPNYLHR	13	Unmodified	_VLAMSGDPNYLHR_			0	0	0	P30153	P30153	P30153	PPP2R1A	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.869368	1471.72418	2.2588	0.0016644	-0.91866	-0.00067693	1.3401	0.00098747	736.868822680504	7.8197	0.17742	7.8197	7.7664	7.9438	0	366	34	1.07994477139643	0.0220663300779218	1.07994477139643	436.607110032565	0	8.92111972715827						319	21	4	NaN	NaN	NaN	0.0012253	1	17643	64.906	60.077	1	79370			20705	905	17465	17967	20705	20705		
VLAPQISFAPEIASEEER	18	Unmodified	_VLAPQISFAPEIASEEER_			0	0	0	P16083	P16083	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	993.512562	1985.01057	1.584	0.0015737	-2.2626	-0.0022479	-0.67863	-0.00067422	993.509868790032	14.914	0.19515	14.914	14.826	15.021	0	213	67	1.18187287897418	0.0437909492185982	1.18187287897418	476.662674377912	0	17.6613841805064						700	23	4	NaN	NaN	NaN	0.0026085	1	31369	35.246	32.857	1	187570			20706	722	17466	17968	20706	20706		
VLAQNSGFDLQETLVK	16	Unmodified	_VLAQNSGFDLQETLVK_			0	0	0	P40227	P40227	P40227	CCT6A	T-complex protein 1 subunit zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.472709	1760.93086	2.6967	0.0023771	0.63761	0.00056204	3.3344	0.0029391	881.473388928444	13.425	0.41677	13.425	13.371	13.788	0	273	76	1.14198628764525	0.049916552848811	1.14198628764525	460.982700495771	0	20.1496879433923						1470	48	5	NaN	NaN	NaN	1.3319E-08	1	26177	150.85	121.1	1	1148600			20707	1016	17467	17969	20707	20707		
VLAQYYTVTDEHHR	14	Unmodified	_VLAQYYTVTDEHHR_			0	0	0	Q9NX58	Q9NX58	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.426093	1730.83763	3.3558	0.0029076	-2.0303	-0.0017591	1.3255	0.0011484	866.42410564431	5.6647	0.079874	5.6647	5.6292	5.7091	0	267	31	1.14597988355104	0.0199679817951182	1.14597988355104	462.6576194402	0	8.06151927704684						225	10	4	NaN	NaN	NaN	0.0001244	1	25348	82.437	70.419	1	56556			20708	3099	17468	17970	20708	20708		
VLAQYYTVTDEHHR	14	Unmodified	_VLAQYYTVTDEHHR_			0	0	0	Q9NX58	Q9NX58	Q9NX58	LYAR	Cell growth-regulating nucleolar protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.953154	1730.83763	0.60176	0.00034779	0.75396	0.00043576	1.3557	0.00078354	577.953702135793	5.6647	0.12421	5.6647	5.6292	5.7534	0	708	58	0.849494101904619	0.0386884208613425	0.849494101904619	514.437163748953	0	23.4289578388026						326	15	4	NaN	NaN	NaN	0.00020808	1	25349	60	59.261	1	79647			20709	3099	17468	17970	20709	20709		
VLATAFDTTLGGR	13	Unmodified	_VLATAFDTTLGGR_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.359159	1320.70376	0.97685	0.00064605	-1.8436	-0.0012193	-0.86672	-0.00057321	661.357754345301	11.571	0.19513	11.571	11.509	11.704	0	513	76	0.981336640919867	0.0504493774018596	0.981336640919867	397.163438701298	0	20.4177112865984						717	23	4	NaN	NaN	NaN	1.7127E-07	1	13008	116.13	90.275	1	549780			20710	955	17469	17971	20710	20710		
VLATTFDPYLGGR	13	Unmodified	_VLATTFDPYLGGR_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.374809	1408.73507	1.4734	0.0010393	-0.081908	-5.7776E-05	1.3914	0.00098149	705.374469142857	13.008	0.31931	13.008	12.884	13.203	0	471	97	1.00957851518677	0.0645439967199662	1.00957851518677	408.328916860464	0	26.1051318684544						949	37	5	NaN	NaN	NaN	3.3375E-05	1	15724	111.61	91.424	1	476530			20711	450	17470	17972	20711	20711		
VLAVNQENEHLMEDYEK	17	Unmodified	_VLAVNQENEHLMEDYEK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.98331	2059.95207	2.0328	0.0020958	-1.2256	-0.0012636	0.80719	0.0008322	1030.9824159232	9.0617	0.070955	9.0617	9.0351	9.106	0	156	46	1.21966378336455	0.0298062737780984	1.21966378336455	491.779881222522	0	12.018169251401						290	9	4	NaN	NaN	NaN	0.0011886	1	32700	50.641	46.57	1	60409			20712	221	17471	17973	20712	20712		
VLAVNQENEHLMEDYEK	17	Unmodified	_VLAVNQENEHLMEDYEK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	687.657967	2059.95207	1.4498	0.00099699	-0.082205	-5.6529E-05	1.3676	0.00094046	687.992396454174	9.0617	0.17736	9.0617	9.0174	9.1947	0	549	73	0.957085760909907	0.0485756871026857	0.957085760909907	578.857039687481	0	29.3791628561203						933	21	6	NaN	NaN	NaN	3.7888E-10	1	32701	106.97	98.218	1	657140			20713	221	17471	17973	20713	20713		
VLAVNQENEQLMEDYEK	17	Unmodified	_VLAVNQENEQLMEDYEK_			0	0	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.48314	2050.95174	2.0602	0.0021147	-0.99141	-0.0010177	1.0688	0.0010971	1026.98385472603	11.181	0.12414	11.181	11.146	11.27	0	219	58	1.17788915118882	0.0378636312873253	1.17788915118882	474.949910852634	0	15.2674199319367						563	15	5	NaN	NaN	NaN	1.1607E-13	1	32550	95.345	93.244	1	143500			20714	671	17472	17974	20714	20714		
VLAVNQENEQLMEDYEK	17	Oxidation (M)	_VLAVNQENEQLM(Oxidation (M))EDYEK_	VLAVNQENEQLM(1)EDYEK	VLAVNQENEQLM(51)EDYEK	0	1	0	P12814	P12814	P12814	ACTN1	Alpha-actinin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1034.4806	2066.94665	1.9177	0.0019838	-1.1184	-0.001157	0.79929	0.00082685	1034.47900092123	8.9287	0.079857	8.9287	8.9109	8.9908	0	219	34	1.17788915118882	0.0219150210446621	1.17788915118882	474.925196455563	0	8.83614189370826						156	10	3	NaN	NaN	NaN	0.0099395	1	32828	50.641	48.252	1	25500			20715	671	17472	17975	20715	20715	204	
VLCELADLQDK	11	Unmodified	_VLCELADLQDK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.331753	1302.64895	1.6306	0.0010637	0.84948	0.00055415	2.4801	0.0016178	652.332866789911	10.303	0.28376	10.303	10.232	10.516	0	516	52	0.979317271586824	0.0343245429890272	0.979317271586824	396.403027674022	0	13.8937126497632						952	33	5	NaN	NaN	NaN	2.4617E-07	1	12427	129.28	107.24	1	839130			20716	747	17473	17976	20716	20716		
VLCFHGPLLYEAK	13	Unmodified	_VLCFHGPLLYEAK_			0	0	0	Q9UBU8	Q9UBU8	Q9UBU8	MORF4L1	Mortality factor 4-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	516.2744	1545.80137	-2.2517	-0.0011625	0.075149	3.8797E-05	-2.1766	-0.0011237	516.274464181774	12.041	0.088691	12.041	11.988	12.077	0	780	31	0.800512323802183	0.020440313348464	0.800512323802183	485.234954605623	0	12.3900085293598						210	11	4	NaN	NaN	NaN	0.050376	1	19919	35.33	30.501	1	44827			20717	3190	17474	17977	20717	20717		
VLCGGDIYVPEDPK	14	Unmodified	_VLCGGDIYVPEDPK_			0	0	0	P49189	P49189	P49189	ALDH9A1	4-trimethylaminobutyraldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.381974	1560.74939	2.2559	0.0017627	-0.41523	-0.00032445	1.8407	0.0014383	781.382049368089	9.9396	0.30149	9.9396	9.8686	10.17	0	396	133	1.05987478976334	0.088271594583174	1.05987478976334	428.265356956271	0	35.6680490265301						1617	35	5	NaN	NaN	NaN	0.00015709	1	20360	62.705	55.129	1	524010			20718	1123	17475	17978	20718	20718		
VLCLAVAVGHVK	12	Unmodified	_VLCLAVAVGHVK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	422.584797	1264.73256	-1.5362	-0.00064919	-1.4064	-0.00059433	-2.9426	-0.0012435	422.584237656164	9.8686	0.15961	9.8686	9.8243	9.9839	0	792	28	0.792332785124922	0.0184103687161689	0.792332785124922	481.221801749543	0	11.1815022308731						365	19	4	NaN	NaN	NaN	0.024309	1	11361	48.157	44.55	1	159380			20719	1413	17476	17979	20719	20719		
VLCLAVAVGHVK	12	Unmodified	_VLCLAVAVGHVK_			0	0	0	P62906	P62906	P62906	RPL10A	60S ribosomal protein L10a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.373558	1264.73256	2.3209	0.00147	-0.24581	-0.00015569	2.075	0.0013143	633.373600202951	9.8686	0.23051	9.8686	9.8154	10.046	0	441	52	1.02971785871157	0.0342250726954365	1.02971785871157	416.935026595243	0	13.8578072369754						694	27	5	NaN	NaN	NaN	0.0002316	1	11362	110.22	96.223	1	367630			20720	1413	17476	17979	20720	20720		
VLCPIIQTADYPINLAAIK	19	Unmodified	_VLCPIIQTADYPINLAAIK_			0	0	0	O75122	O75122	O75122	CLASP2	CLIP-associating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1057.08993	2112.1653	0.44167	0.00046689	0.99766	0.0010546	1.4393	0.0015215	1057.59273270525	18.053	0.062097	18.053	18.018	18.08	0	120	79	1.2434810169581	0.0515192334465751	1.2434810169581	501.300213544953	0	20.7695995163796						317	8	3	NaN	NaN	NaN	5.7847E-05	1	33495	49.487	43.788	1	60573			20721	302	17477	17980	20721	20721		
VLCQFCDQDPAQDAVK	16	Unmodified	_VLCQFCDQDPAQDAVK_			0	0	0	O15344	O15344	O15344	MID1	E3 ubiquitin-protein ligase Midline-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	947.427118	1892.83968	2.373	0.0022483	-2.4433	-0.0023148	-0.070245	-6.6552E-05	947.426251713135	8.9198	0.1243	8.9198	8.8576	8.9819	0	270	25	1.14398322290989	0.0159765819712272	1.14398322290989	461.537325047807	0	6.4457142016916						260	15	5	NaN	NaN	NaN	0.003807	1	29433	66.485	64.184	1	47962			20722	164	17478	17981	20722	20722		
VLCYYGSQEER	11	Unmodified	_VLCYYGSQEER_			0	0	0	Q9H4L7	Q9H4L7	Q9H4L7	SMARCAD1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.316634	1402.61871	1.8603	0.0013065	1.1186	0.00078558	2.9788	0.0020921	702.318080842341	5.78	0.18621	5.78	5.6825	5.8687	0	516	49	0.979317271586824	0.0323032171840146	0.979317271586824	396.106396141352	0	13.065746223181						384	22	3	NaN	NaN	NaN	0.067036	1	15525	26.947	8.1355	1	84963			20723	2896	17479	17982	20723	20723		
VLDAESMHDCVSVVK	15	Unmodified	_VLDAESMHDCVSVVK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.604257	1687.79094	-1.1771	-0.0006634	-0.34608	-0.00019505	-1.5231	-0.00085845	563.604503686551	8.2544	0.10647	8.2544	8.21	8.3164	0	789	40	0.794378096728713	0.0265816558003595	0.794378096728713	481.157339048106	0	16.1005934391486						374	13	5	NaN	NaN	NaN	0.0028531	1	24129	54.199	47.452	1	132200			20724	2149	17480	17983	20724	20724		
VLDAESMHDCVSVVK	15	Unmodified	_VLDAESMHDCVSVVK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.902747	1687.79094	2.4362	0.0020584	-1.0624	-0.00089766	1.3738	0.0011607	844.901853961756	8.2454	0.088737	8.2454	8.2188	8.3076	0	273	37	1.14198628764525	0.0239681717267723	1.14198628764525	461.138726385152	0	9.67844562009122						238	11	4	NaN	NaN	NaN	1.866E-08	1	24130	126.21	105.88	1	53535			20725	2149	17480	17983	20725	20725		
VLDALFPCVQGGTTAIPGAFGCGK	24	Unmodified	_VLDALFPCVQGGTTAIPGAFGCGK_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	812.739855	2435.19774	0.97494	0.00079237	1.5774	0.0012821	2.5524	0.0020744	813.075483020536	17.912	0.10638	17.912	17.867	17.974	0	366	19	1.07994477139643	0.0120336904413609	1.07994477139643	652.489937875855	0	7.27061432812718						86	13	2	NaN	NaN	NaN	0.052843	1	36504	7.749	7.6843	1	19373			20726	1006	17481	17984	20726	20726		
VLDAMLPYLINYYGNPHSR	19	Unmodified	_VLDAMLPYLINYYGNPHSR_			0	0	0	Q9Y697	Q9Y697	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	746.045496	2235.11466	-0.030456	-2.2722E-05	0.83098	0.00061995	0.80052	0.00059722	746.380439923334	17.982	0.12414	17.982	17.92	18.045	0	483	37	1.00151498427745	0.0242039733351906	1.00151498427745	605.410730749388	0	14.631179177482						353	15	3	NaN	NaN	NaN	0.0010402	1	35043	47.844	35.469	1	73457			20727	3455	17482	17985	20727	20727		
VLDDGELLVQQTK	13	Unmodified	_VLDDGELLVQQTK_			0	0	0	P46459	P46459	P46459	NSF	Vesicle-fusing ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.395938	1456.77732	1.5504	0.0011309	-2.317	-0.00169	-0.76664	-0.00055919	729.895343888511	10.294	0.2128	10.294	10.25	10.463	0	432	64	1.035754240522	0.0422722007685605	1.035754240522	418.78149446452	0	17.0917141533886						544	25	4	NaN	NaN	NaN	8.9405E-08	1	17158	147.19	121.33	1	143520			20728	1082	17483	17986	20728	20728		
VLDELTLAR	9	Unmodified	_VLDELTLAR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7;P02533;CON__P02533;CON__Q6IFX2;CON__P19012;P19012;CON__P08779;CON__A2A4G1;P08779	Q04695	Q04695	KRT17;KRT14;KRT15;KRT16	Keratin, type I cytoskeletal 17;Keratin, type I cytoskeletal 14;Keratin, type I cytoskeletal 15;Keratin, type I cytoskeletal 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.300581	1028.58661	0.85641	0.00044131	-0.43728	-0.00022533	0.41912	0.00021597	515.300437149945	10.48	0.30151	10.48	10.383	10.684	0	693	61	0.85967808974117	0.0406992154745967	0.85967808974117	348.947308449715	0	16.5199995967693						899	35	4	NaN	NaN	NaN	0.0036061	1	4965	79.809	62.414	1	985150		+	20729	36	17484	17987	20729	20729		
VLDFEHFLPMLQTVAK	16	Unmodified	_VLDFEHFLPMLQTVAK_			0	0	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.00609	1886.99644	-0.28766	-0.00018123	-0.64475	-0.0004062	-0.93241	-0.00058742	630.340020861478	19.623	0.19509	19.623	19.525	19.72	0	690	109	0.86171403876517	0.0731976775722243	0.86171403876517	521.494448283025	0	44.2979698181851						1392	23	6	NaN	NaN	NaN	1.9352E-06	1	29316	92.747	80.729	1	611240			20730	1309	17485	17988	20730	20730		
VLDFEHFLPMLQTVAK	16	Unmodified	_VLDFEHFLPMLQTVAK_			0	0	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.505497	1886.99644	1.4482	0.0013678	-0.33172	-0.00031332	1.1165	0.0010545	945.006799372921	19.623	0.1685	19.623	19.534	19.703	0	219	67	1.17788915118882	0.0438270504083127	1.17788915118882	475.227291905649	0	17.6823179470952						837	20	5	NaN	NaN	NaN	5.2741E-12	1	29318	103.23	92.259	1	241000			20731	1309	17485	17988	20731	20731		
VLDFEHFLPMLQTVAK	16	Oxidation (M)	_VLDFEHFLPM(Oxidation (M))LQTVAK_	VLDFEHFLPM(1)LQTVAK	VLDFEHFLPM(44)LQTVAK	0	1	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.337729	1902.99136	-0.42148	-0.00026778	-5.3674	-0.0034101	-5.7889	-0.0036779	635.672202691682	18.036	0.17734	18.036	17.947	18.124	0	636	43	0.898312834727904	0.0284341478220305	0.898312834727904	543.610109030336	0	17.2068010164861						655	21	6	NaN	NaN	NaN	0.0016459	1	29668	44.045	34.889	1	142760			20732	1309	17485	17989	20732	20732	458	
VLDFEHFLPMLQTVAK	16	Oxidation (M)	_VLDFEHFLPM(Oxidation (M))LQTVAK_	VLDFEHFLPM(1)LQTVAK	VLDFEHFLPM(57)LQTVAK	0	1	0	P60660	P60660	P60660	MYL6	Myosin light polypeptide 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.337729	1902.99136	-0.82915	-0.00052679	-3.4462	-0.0021895	-4.2753	-0.0027163	635.672176140512	18.045	0.19505	18.045	17.938	18.133	0	696	52	0.857641857947968	0.0346063393446338	0.857641857947968	518.998236913903	0	20.9418756086398						842	23	5	NaN	NaN	NaN	0.0052831	1	29669	56.938	54.223	1	239440			20733	1309	17485	17989	20733	20733	458	
VLDGLHNELQTIGFQIETIGK	21	Unmodified	_VLDGLHNELQTIGFQIETIGK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.753147	2324.23761	0.012644	9.8086E-06	-0.72863	-0.00056524	-0.71599	-0.00055543	776.086698937024	18.674	0.062071	18.674	18.648	18.71	0	561	28	0.948993180460448	0.018214610793113	0.948993180460448	573.525772239238	0	11.0080334993437						173	8	4	NaN	NaN	NaN	0.00020359	1	35854	46.823	45.88	1	32875			20734	275	17486	17990	20734	20734		
VLDGLHNELQTIGFQIETIGK	21	Unmodified	_VLDGLHNELQTIGFQIETIGK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.753147	2324.23761	0.57821	0.00044855	-0.44344	-0.000344	0.13477	0.00010455	776.087008162673	18.683	0.070941	18.683	18.648	18.718	0	447	25	1.02569221487577	0.0161048002118316	1.02569221487577	619.878973559392	0	9.73296558158859						179	9	5	NaN	NaN	NaN	0.00013837	1	35855	77.325	68.193	1	45003			20735	275	17486	17990	20735	20735		
VLDIIYQPQAIFR	13	Unmodified	_VLDIIYQPQAIFR_			0	0	0	Q9NVX2	Q9NVX2	Q9NVX2	NLE1	Notchless protein homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.448308	1574.88206	0.72825	0.00057418	-0.29937	-0.00023604	0.42888	0.00033815	788.950001998542	17.211	0.12417	17.211	17.167	17.291	0	372	28	1.07593298845566	0.0180567582356488	1.07593298845566	434.71971036602	0	7.29564832993674						238	15	3	NaN	NaN	NaN	0.0058209	1	20836	40.386	27.804	1	59493			20736	3077	17487	17991	20736	20736		
VLDILEDYCMWR	12	Unmodified	_VLDILEDYCMWR_			0	0	0	O60264	O60264	O60264	SMARCA5	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.878544	1611.74254	1.3751	0.0011096	3.235	0.0026102	4.6101	0.0037198	807.383397966671	18.346	0.09752	18.346	18.311	18.408	0	384	28	1.06790610341098	0.0180692111077525	1.06790610341098	431.390494835185	0	7.29922405739353						162	12	4	NaN	NaN	NaN	0.020526	1	21943	36.514	25.159	1	51135			20737	251	17488	17992	20737	20737		
VLDILLEQYPALITGR	16	Unmodified	_VLDILLEQYPALITGR_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.524744	1813.03494	0.30434	0.00027619	2.6114	0.0023699	2.9157	0.0026461	908.028013171366	19.153	0.070947	19.153	19.126	19.197	0	237	28	1.16593139812432	0.0179452593666323	1.16593139812432	470.542878735974	0	7.24229059756266						153	9	3	NaN	NaN	NaN	0.0001241	1	27562	75.012	73.643	1	33003			20738	3102	17489	17993	20738	20738		
VLDLDLFR	8	Unmodified	_VLDLDLFR_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.784567	989.554582	0.0016816	8.337E-07	-1.1288	-0.00055963	-1.1271	-0.0005588	495.784174291593	16.014	0.22168	16.014	15.961	16.182	0	648	61	0.890187667287968	0.0406540476678932	0.890187667287968	361.519433680216	0	16.5102582632733						632	26	4	NaN	NaN	NaN	0.0008791	1	4048	89.123	52.553	1	490690			20739	1139	17490	17994	20739	20739		
VLDLELK	7	Unmodified	_VLDLELK_			0	0	0	P04083	P04083	P04083	ANXA1	Annexin A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	415.255111	828.49567	-1.5102	-0.0006271	0.15556	6.4596E-05	-1.3546	-0.0005625	415.25525742147	10.383	0.09753	10.383	10.347	10.445	0	768	40	0.808687310729125	0.0265557785134225	0.808687310729125	329.294619846795	0	10.8134193207864						171	12	2	NaN	NaN	NaN	0.041846	1	1296	38.322	0.71401	1	34771			20740	506	17491	17995	20740	20740		
VLDLQQIK	8	Unmodified	_VLDLQQIK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.792392	955.570232	-0.41971	-0.00020096	-1.1353	-0.00054357	-1.555	-0.00074452	478.791999513379	8.9464	0.1243	8.9464	8.8931	9.0174	0	732	49	0.833184998970724	0.0326272809227941	0.833184998970724	338.53467004613	0	13.2569186859407						335	15	3	NaN	NaN	NaN	0.0085397	1	3349	85.813	38.977	1	146840			20741	3300	17492	17996	20741	20741		
VLDLVEVLVTK	11	Unmodified	_VLDLVEVLVTK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.381571	1226.74859	0.24204	0.00014871	0.26863	0.00016504	0.51067	0.00031375	614.381611482134	18.027	0.20394	18.027	17.912	18.115	0	531	94	0.969216233931596	0.0627392811075295	0.969216233931596	392.568996368787	0	25.4117664923681						635	24	4	NaN	NaN	NaN	0.00047382	1	10208	87.942	71.29	1	190630			20742	2698	17493	17997	20742	20742		
VLDNFSDIVEGVDFDK	16	Unmodified	_VLDNFSDIVEGVDFDK_			0	0	0	Q9HCK8	Q9HCK8	Q9HCK8	CHD8	Chromodomain-helicase-DNA-binding protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	906.438531	1810.86251	0.80833	0.0007327	2.4927	0.0022594	3.301	0.0029921	906.441428183298	17.557	0.079791	17.557	17.53	17.61	0	252	22	1.15595906938629	0.013965099415836	1.15595906938629	466.522527020446	0	5.63604165762246						120	10	3	NaN	NaN	NaN	0.0033768	1	27492	55.782	48.206	1	21640			20743	2964	17494	17998	20743	20743		
VLDNYLTSPLPEEVDETSAEDEGVSQR	27	Unmodified	_VLDNYLTSPLPEEVDETSAEDEGVSQR_			0	0	0	O00299	O00299	O00299	CLIC1	Chloride intracellular channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	998.135038	2991.38328	1.4824	0.0014796	1.8973	0.0018938	3.3797	0.0033734	998.471116213407	14.737	0.14191	14.737	14.666	14.808	0	222	256	1.17589687683038	0.170044850136062	1.17589687683038	709.713209842102	0	102.630663270817						1560	17	5	NaN	NaN	NaN	5.1121E-11	1	38211	131.63	126.51	1	351590			20744	71	17495	17999	20744	20744		
VLDPFTIK	8	Unmodified	_VLDPFTIK_			0	0	0	P29401	P29401	P29401	TKT	Transketolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.776211	931.537869	-0.75929	-0.00035442	-0.2318	-0.0001082	-0.99109	-0.00046262	466.776253877989	12.405	0.38128	12.405	12.29	12.671	0	732	91	0.833184998970724	0.0612357606933649	0.833184998970724	338.658493317112	0	24.8900430026476						1660	44	4	NaN	NaN	NaN	0.040891	1	2906	33.396	0	1	1377900			20745	888	17496	18000	20745	20745		
VLDSFCEGLK	10	Unmodified	_VLDSFCEGLK_			0	0	0	CON__Q3SX09	CON__Q3SX09	CON__Q3SX09			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.289356	1166.56416	1.4152	0.00082686	-2.127	-0.0012428	-0.71183	-0.00041591	584.289128176259	9.78	0.31921	9.78	9.6913	10.01	0	618	58	0.910492137470517	0.0385544403778527	0.910492137470517	368.995157989829	0	15.624958451545						659	37	3	NaN	NaN	NaN	0.00072042	1	8503	90.761	75.999	1	260000		+	20746	40	17497	18001	20746	20746		
VLEALLPLK	9	Unmodified	_VLEALLPLK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.328611	994.642668	0.13115	6.5356E-05	-2.2546	-0.0011236	-2.1235	-0.0010582	498.327699077772	14.489	0.17734	14.489	14.435	14.613	0	696	49	0.857641857947968	0.0325819812150898	0.857641857947968	348.27763756677	0	13.2311352806253						671	21	4	NaN	NaN	NaN	0.0056914	1	4164	51.864	31.205	1	574740			20747	1127	17498	18002	20747	20747		
VLECLASGIVMPDGSGIYDPCEK	23	Unmodified	_VLECLASGIVMPDGSGIYDPCEK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1255.58422	2509.15388	0.033813	4.2455E-05	-0.30249	-0.0003798	-0.26868	-0.00033735	1256.08645075408	16.351	0.079809	16.351	16.307	16.386	0	66	34	1.27913350869533	0.0217652629836462	1.27913350869533	515.139948614938	0	8.76543095679045						223	10	4	NaN	NaN	NaN	4.4058E-06	1	36877	73.262	62.209	1	32554			20748	1606	17499	18003	20748	20748		
VLEDPAIASDESFGAVK	17	Unmodified	_VLEDPAIASDESFGAVK_			0	0	0	O95544	O95544	O95544	NADK	NAD kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.441074	1746.8676	1.7283	0.0015113	-0.14302	-0.00012507	1.5852	0.0013862	874.441857519811	11.766	0.16847	11.766	11.669	11.837	0	291	28	1.12999890578964	0.0179922103479333	1.12999890578964	456.172472945625	0	7.26332658033783						296	20	3	NaN	NaN	NaN	0.00011582	1	25803	69.327	64.51	1	64669			20749	441	17500	18004	20749	20749		
VLEDSDLK	8	Unmodified	_VLEDSDLK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.742565	917.470577	0.6195	0.00028481	1.0318	0.00047438	1.6513	0.00075919	459.743261710363	4.5209	0.49654	4.5209	4.4322	4.9287	0	744	46	0.82502364452135	0.0306072144336844	0.82502364452135	335.415926361596	0	12.4434581369826						998	57	4	NaN	NaN	NaN	0.020524	1	2651	47.349	24.04	1	1053800			20750	638	17501	18005	20750	20750		
VLEEANQAINPK	12	Unmodified	_VLEEANQAINPK_			0	0	0	Q92841	Q92841	Q92841	DDX17	Probable ATP-dependent RNA helicase DDX17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.356616	1324.69868	2.1635	0.0014352	-2.1352	-0.0014164	0.028301	1.8773E-05	663.356334428913	5.9573	0.31929	5.9573	5.8864	6.2057	0	489	43	0.997481546940468	0.0282457786988155	0.997481546940468	403.684949321862	0	11.4311846445299						702	37	4	NaN	NaN	NaN	3.8025E-07	1	13140	114.39	89.14	1	425990			20751	2435	17502	18006	20751	20751		
VLEEGGFFEEK	11	Unmodified	_VLEEGGFFEEK_			0	0	0	Q9NR12	Q9NR12	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.311343	1282.60813	1.4614	0.00093869	6.748	0.0043343	8.2094	0.005273	642.31362392151	10.48	0.12417	10.48	10.427	10.551	0	522	37	0.975277694896658	0.0242408171075922	0.975277694896658	394.832606380042	0	9.81368183590695						262	15	3	NaN	NaN	NaN	0.0039653	1	11836	40.502	35.595	1	50055			20752	3009	17503	18007	20752	20752		
VLEEGSVEAR	10	Unmodified	_VLEEGSVEAR_			0	0	0	Q96CT7	Q96CT7	Q96CT7	CCDC124	Coiled-coil domain-containing protein 124	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.782753	1087.55095	1.6408	0.00089386	0.74347	0.00040503	2.3842	0.0012989	544.783938417373	4.1928	0.24827	4.1928	4.1219	4.3701	0	642	40	0.894250814548268	0.0264049676271125	0.894250814548268	362.720531917049	0	10.710221055596						431	29	3	NaN	NaN	NaN	0.0010127	1	6400	49.16	34.625	1	144500			20753	2497	17504	18008	20753	20753		
VLEENQEHYHIVQK	14	Unmodified	_VLEENQEHYHIVQK_			0	0	0	P57740	P57740	P57740	NUP107	Nuclear pore complex protein Nup107	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.300442	1764.8795	1.316	0.00077555	1.1925	0.00070272	2.5085	0.0014783	589.301174113818	4.2726	0.079803	4.2726	4.246	4.3258	0	687	28	0.863749705078866	0.0183209985897086	0.863749705078866	522.990001656506	0	11.0931431020351						192	10	4	NaN	NaN	NaN	2.7387E-05	1	26264	96.946	78.438	1	55365			20754	1297	17505	18009	20754	20754		
VLEEYGAGVCSTR	13	Unmodified	_VLEEYGAGVCSTR_			0	0	0	O15270	O15270	O15270	SPTLC2	Serine palmitoyltransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.843016	1439.67148	1.7585	0.0012676	-0.75926	-0.00054731	0.99926	0.00072031	720.842444111957	6.5604	0.19509	6.5604	6.4983	6.6934	0	483	43	1.00151498427745	0.0282223642455827	1.00151498427745	404.98295646477	0	11.4122870751132						308	23	3	NaN	NaN	NaN	0.0055617	1	16660	62.705	56.839	1	68954			20755	160	17506	18010	20755	20755		
VLEFNCR	7	Unmodified	_VLEFNCR_			0	0	0	P22102	P22102	P22102	GART	Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.231645	936.448736	-0.67475	-0.00031662	0.99745	0.00046803	0.32269	0.00015142	469.231794302905	6.3033	0.2572	6.3033	6.2411	6.4983	0	750	34	0.820941264895493	0.0224546522756353	0.820941264895493	333.656432193885	0	9.12627916857917						391	30	3	NaN	NaN	NaN	0.041853	1	2994	33.813	19.278	1	147670			20756	801	17507	18011	20756	20756		
VLEGLREDMLETLVPK	16	Unmodified	_VLEGLREDMLETLVPK_			0	0	1	Q92917	Q92917	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.672888	1840.99684	-0.27991	-0.00017205	-2.2422	-0.0013782	-2.5221	-0.0015503	614.671424092924	16.635	0.21281	16.635	16.51	16.723	0	642	34	0.894250814548268	0.0223457630982734	0.894250814548268	541.283726277969	0	13.5257331831094						498	25	4	NaN	NaN	NaN	0.00015858	1	28266	66.485	64.502	1	131160			20757	2444	17508	18012	20757	20757		
VLEGMEVVR	9	Unmodified	_VLEGMEVVR_			0	0	0	P23284	P23284	P23284	PPIB	Peptidyl-prolyl cis-trans isomerase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.281334	1030.54812	0.95584	0.00049348	1.8894	0.00097546	2.8452	0.0014689	516.281602215472	8.485	0.39924	8.485	8.3785	8.7778	0	669	76	0.875957769340875	0.0508140477293471	0.875957769340875	355.546357848134	0	20.6251376836182						1034	46	4	NaN	NaN	NaN	0.0016636	1	5017	84.368	61.982	1	871450			20758	816	17509	18013	20758	20758		
VLEGNEQFINAAK	13	Unmodified	_VLEGNEQFINAAK_			0	0	0	P35030	P35030	P35030	PRSS3	Trypsin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.875173	1431.73579	2.0606	0.0014772	-3.3348	-0.0023906	-1.2742	-0.00091344	716.873820522056	8.4495	0.23055	8.4495	8.3697	8.6002	0	447	58	1.02569221487577	0.0382515551187681	1.02569221487577	414.781399489433	0	15.468610695004						568	27	3	NaN	NaN	NaN	0.0035228	1	16453	54.27	42.914	1	241790			20759	957	17510	18014	20759	20759		
VLEHQLLQTTK	11	Unmodified	_VLEHQLLQTTK_			0	0	0	O14530	O14530	O14530	TXNDC9	Thioredoxin domain-containing protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.377352	1308.74015	1.9058	0.001249	-0.46705	-0.00030609	1.4387	0.0009429	655.376820425551	5.5405	0.088657	5.5405	5.5051	5.5937	0	462	25	1.01562323939346	0.0161181521941178	1.01562323939346	411.078697666226	0	6.52390449109947						175	11	3	NaN	NaN	NaN	0.0047111	1	12626	66.664	57.687	1	45109			20760	101	17511	18015	20760	20760		
VLEHVPLLLYILAAK	15	Unmodified	_VLEHVPLLLYILAAK_			0	0	0	P58511	P58511	P58511	SMIM11	Small integral membrane protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.686798	1691.03856	-0.29215	-0.00016497	-0.20959	-0.00011836	-0.50174	-0.00028333	565.021025347701	19.756	0.11529	19.756	19.694	19.809	0	660	19	0.882057989648486	0.0121979015150934	0.882057989648486	534.256981953687	0	7.38819230266165						164	14	3	NaN	NaN	NaN	0.00015442	1	24242	43.306	38.778	1	37191			20761	1299	17512	18016	20761	20761		
VLELDPALAPVVSR	14	Unmodified	_VLELDPALAPVVSR_			0	0	0	O00170	O00170	O00170	AIP	AH receptor-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.932491	1477.85043	0.73962	0.00054727	0.065516	4.8477E-05	0.80514	0.00059575	739.932549968299	14.755	0.16849	14.755	14.701	14.87	0	432	40	1.035754240522	0.0261540485744427	1.035754240522	418.725302086781	0	10.5733208339139						502	20	5	NaN	NaN	NaN	0.00021309	1	17839	80.623	61.367	1	321950			20762	57	17513	18017	20762	20762		
VLELEPNNFEATNELR	16	Unmodified	_VLELEPNNFEATNELR_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.47598	1886.93741	1.6893	0.0015955	0.83883	0.00079226	2.5282	0.0023878	944.978260013058	13.434	0.070932	13.434	13.398	13.469	0	282	34	1.13599383354359	0.0219753573460744	1.13599383354359	458.324445258242	0	8.86610751536682						171	9	3	NaN	NaN	NaN	0.071179	1	29308	19.89	16.602	1	36303			20763	2909	17514	18018	20763	20763		
VLELLLPIR	9	Unmodified	_VLELLLPIR_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.35516	1064.69577	-0.69989	-0.00037329	-0.14586	-7.7793E-05	-0.84574	-0.00045108	533.35500117902	17.38	0.12414	17.38	17.326	17.45	0	663	46	0.880024865079826	0.0304968767527163	0.880024865079826	357.046133195803	0	12.3732775642864						392	15	3	NaN	NaN	NaN	0.00073814	1	5844	72.492	53.005	1	135370			20764	1975	17515	18019	20764	20764		
VLELNASDER	10	Unmodified	_VLELNASDER_			0	0	0	P35249	P35249	P35249	RFC4	Replication factor C subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.293485	1144.57242	1.2626	0.00072385	1.535	0.00088001	2.7976	0.0016039	573.294393670605	6.2234	0.15079	6.2234	6.1791	6.3299	-8.8818E-16	597	31	0.924688525662974	0.0202707209833614	0.924688525662974	374.832638825981	0	8.21695914486548						262	18	2	NaN	NaN	NaN	1.6949E-05	1	7916	102.55	65.976	1	88291			20765	964	17516	18020	20765	20765		
VLELTAENER	10	Unmodified	_VLELTAENER_			0	0	0	P17676	P17676	P17676	CEBPB	CCAAT/enhancer-binding protein beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.309135	1172.60372	1.3227	0.00077686	-0.075834	-4.4538E-05	1.2469	0.00073232	587.309148778121	6.6402	0.11527	6.6402	6.6047	6.72	0	591	43	0.928742107665821	0.0283593603705795	0.928742107665821	376.368660260582	0	11.4925062408848						326	14	3	NaN	NaN	NaN	0.007163	1	8674	50.834	20.242	1	63790			20766	740	17517	18021	20766	20766		
VLELVSITANK	11	Unmodified	_VLELVSITANK_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.855721	1185.69689	0.48005	0.00028508	0.33449	0.00019864	0.81454	0.00048372	593.855932633208	12.041	0.19511	12.041	11.997	12.192	-1.7764E-15	528	52	0.971237000454584	0.034362550528363	0.971237000454584	393.538990175108	0	13.9234846164672						334	23	3	NaN	NaN	NaN	2.9061E-05	1	9043	92.732	60.604	1	87622			20767	954	17518	18022	20767	20767		
VLENAEGAR	9	Unmodified	_VLENAEGAR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	479.751256	957.487959	0.99195	0.00047589	0.41289	0.00019808	1.4048	0.00067397	479.751504226243	2.6321	0.34584	2.6321	2.5966	2.9424	0	744	46	0.82502364452135	0.0306157267397379	0.82502364452135	335.20906906681	0	12.439242593084						972	40	4	NaN	NaN	NaN	9.4693E-05	1	3380	117.39	91.165	1	411700			20768	1007	17519	18023	20768	20768		
VLENIELNK	9	Unmodified	_VLENIELNK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.305864	1070.59717	0.82117	0.0004404	-1.4882	-0.00079814	-0.66705	-0.00035774	536.305450306023	7.9172	0.17738	7.9172	7.8729	8.0502	0	660	37	0.882057989648486	0.0243991920216602	0.882057989648486	357.845830886058	0	9.89861125278048						397	21	4	NaN	NaN	NaN	0.00091058	1	5980	86.205	38.856	1	200160			20769	3329	17520	18024	20769	20769		
VLEQLIVAHFPMQSR	15	Unmodified	_VLEQLIVAHFPMQSR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.990663	1766.95016	0.087336	5.1527E-05	-1.4909	-0.0008796	-1.4035	-0.00082807	589.989668718609	14.639	0.088671	14.639	14.604	14.693	0	621	58	0.908462957275599	0.0385865321490887	0.908462957275599	550.058327786738	0	23.363465927844						307	11	4	NaN	NaN	NaN	0.0009373	1	26327	38.14	37.401	1	68868			20770	1465	17521	18025	20770	20770		
VLEQLIVAHFPMQSR	15	Unmodified	_VLEQLIVAHFPMQSR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.482356	1766.95016	1.4783	0.0013075	-0.82793	-0.00073229	0.65036	0.00057523	884.983657815798	14.639	0.070946	14.639	14.613	14.684	0	165	19	1.21370334790578	0.0119233247686212	1.21370334790578	489.919511193977	0	4.81293015507401						129	9	3	NaN	NaN	NaN	0.00021654	1	26328	55.782	44.103	1	25815			20771	1465	17521	18025	20771	20771		
VLEQLIVAHFPMQSR	15	Unmodified	_VLEQLIVAHFPMQSR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.482356	1766.95016	1.5922	0.0014083	0.0084422	7.467E-06	1.6007	0.0014158	884.482740307541	14.639	0.07982	14.639	14.604	14.684	0	216	25	1.17988115188462	0.0159349122689614	1.17988115188462	476.266951415526	0	6.43223436130813						123	10	3	NaN	NaN	NaN	0.017715	1	26329	24.922	23.447	1	24049			20772	1465	17521	18025	20772	20772		
VLEQLTGQTPVFSK	14	Unmodified	_VLEQLTGQTPVFSK_			0	0	0	P62913	P62913	P62913	RPL11	60S ribosomal protein L11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.927406	1545.84026	1.4594	0.0011295	2.186	0.0016918	3.6454	0.0028213	773.929366866483	11.917	0.33699	11.917	11.837	12.174	0	396	73	1.05987478976334	0.0482078571373186	1.05987478976334	428.301666849197	0	19.4810799979041						1635	39	6	NaN	NaN	NaN	4.4306E-33	1	19927	264.98	235.23	1	2389700			20773	1415	17522	18026	20773	20773		
VLEQPVVVQSVGTDGR	16	Unmodified	_VLEQPVVVQSVGTDGR_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.957226	1681.8999	2.2048	0.0018563	-0.12419	-0.00010456	2.0806	0.0017518	841.957381640743	9.3011	0.12419	9.3011	9.2479	9.3721	0	342	55	1.09598084995137	0.0360563412671218	1.09598084995137	442.574163424214	0	14.5601130468132						348	15	4	NaN	NaN	NaN	9.1939E-05	1	23968	91.993	88.257	1	95269			20774	2807	17523	18027	20774	20774		
VLESINVQMDENTLHEILNEVDLNK	25	Unmodified	_VLESINVQMDENTLHEILNEVDLNK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	970.490211	2908.4488	1.5453	0.0014997	-1.8246	-0.0017707	-0.27932	-0.00027108	970.822381978342	19.845	0.017735	19.845	19.836	19.853	0	402	19	1.05585747106793	0.0120552821225834	1.05585747106793	637.347490328895	0	7.27693274572744						50	3	3	NaN	NaN	NaN	0.00029937	1	38084	55.354	53.982	1	9180			20775	1064	17524	18028	20775	20775		
VLESTMVCVDNSEYMR	16	Unmodified	_VLESTMVCVDNSEYMR_			0	0	0	P55036	P55036	P55036	PSMD4	26S proteasome non-ATPase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.928636	1931.84272	2.3238	0.0022469	-0.92594	-0.00089532	1.3978	0.0013516	966.927794452233	11.287	0.097534	11.287	11.234	11.332	0	240	46	1.16393748060522	0.0299211058430284	1.16393748060522	469.518824200571	0	12.0698256292036						278	12	3	NaN	NaN	NaN	2.625E-06	1	30347	69.641	65.658	1	50174			20776	1262	17525	18029	20776	20776		
VLETPQEIHTVSSEAVSLLEEVITPR	26	Unmodified	_VLETPQEIHTVSSEAVSLLEEVITPR_			0	0	0	Q9H0A0	Q9H0A0	Q9H0A0	NAT10	N-acetyltransferase 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	959.513233	2875.51787	1.2507	0.0012	-0.65425	-0.00062776	0.59643	0.00057228	959.847023978813	20.119	0.035472	20.119	20.111	20.146	0	312	40	1.11600111266355	0.0260138037074695	1.11600111266355	673.688728423996	0	15.7035742548046						143	5	5	NaN	NaN	NaN	0.016603	1	38042	13.153	13.122	1	52438			20777	2841	17526	18030	20777	20777		
VLETTVEIFNK	11	Unmodified	_VLETTVEIFNK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.85846	1291.70237	0.33897	0.00021926	-0.93713	-0.00060619	-0.59817	-0.00038693	646.858408085638	11.935	0.15962	11.935	11.899	12.059	0	525	40	0.973257487423603	0.0262663358758335	0.973257487423603	393.985219313259	0	10.6328985230728						264	19	2	NaN	NaN	NaN	0.00061628	1	12141	74.424	49.17	1	157300			20778	2605	17527	18031	20778	20778		
VLETVGVFEVPK	12	Unmodified	_VLETVGVFEVPK_			0	0	0	Q9Y2S7	Q9Y2S7	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.876653	1315.73875	1.8333	0.0012079	0.74441	0.00049047	2.5777	0.0016984	658.877171252884	13.531	0.1064	13.531	13.478	13.584	0	414	40	1.04781950764076	0.0261323987291064	1.04781950764076	424.086729766948	0	10.5766340836176						279	13	3	NaN	NaN	NaN	0.012893	1	12857	51.531	36.768	1	74697			20779	3351	17528	18032	20779	20779		
VLFASQEIPASPFR	14	Unmodified	_VLFASQEIPASPFR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.422291	1560.83003	1.0042	0.00078468	0.34266	0.00026776	1.3468	0.0010524	781.422915852056	14.781	0.2483	14.781	14.684	14.932	0	399	97	1.0578662689527	0.0642063046111834	1.0578662689527	427.453573597255	0	25.9439355984907						1200	29	5	NaN	NaN	NaN	3.1621E-12	1	20369	185.18	148.23	1	609270			20780	326	17529	18033	20780	20780		
VLFDPFELDTSVTPGR	16	Unmodified	_VLFDPFELDTSVTPGR_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.959434	1791.90432	1.7375	0.0015584	-2.1118	-0.0018942	-0.3743	-0.00033573	896.958359721483	18.452	0.15967	18.452	18.373	18.532	0	267	52	1.14597988355104	0.0339479110580481	1.14597988355104	462.532325650737	0	13.7018166531926						620	19	5	NaN	NaN	NaN	2.2934E-06	1	27025	59.731	48.759	1	207170			20781	1826	17530	18034	20781	20781		
VLFEQAFSFHGK	12	Unmodified	_VLFEQAFSFHGK_			0	0	0	Q9UKL0;Q9P2K3	Q9UKL0	Q9UKL0	RCOR1;RCOR3	REST corepressor 1;REST corepressor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.578588	1408.71394	-2.3629	-0.0011119	0.93179	0.00043848	-1.4311	-0.00067345	470.579080211986	12.405	0.088661	12.405	12.361	12.449	0	786	22	0.796423123669906	0.0143151894202939	0.796423123669906	483.172490055676	0	8.68471232471245						173	11	3	NaN	NaN	NaN	0.016839	1	15721	49.16	31.69	1	42571			20782	3265	17531	18035	20782	20782		
VLFEYIPQNEDELELK	16	Unmodified	_VLFEYIPQNEDELELK_			0	0	0	Q9Y5K6	Q9Y5K6	Q9Y5K6	CD2AP	CD2-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.004039	1977.99352	1.4957	0.0014808	0.68657	0.0006797	2.1823	0.0021605	990.507473198789	16.041	0.26604	16.041	15.908	16.174	0	195	148	1.19381749893585	0.0972873083827031	1.19381749893585	481.491925343496	0	39.2380355175137						978	31	3	NaN	NaN	NaN	0.066175	1	31253	35.845	20.317	1	270260			20783	3435	17532	18036	20783	20783		
VLFICTANVTDTIPEPLR	18	Unmodified	_VLFICTANVTDTIPEPLR_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.04826	2058.08196	1.3288	0.0013687	-1.9128	-0.0019703	-0.584	-0.00060155	1030.54805837885	17.681	0.15074	17.681	17.628	17.779	0	156	43	1.21966378336455	0.0278172796533693	1.21966378336455	491.78287535985	0	11.2162564464163						346	18	4	NaN	NaN	NaN	8.7858E-05	1	32677	73.502	69.43	1	68998			20784	990	17533	18037	20784	20784		
VLFICTANVTDTIPEPLRDR	20	Unmodified	_VLFICTANVTDTIPEPLRDR_			0	0	1	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	777.410615	2329.21002	0.90474	0.00070335	0.29707	0.00023094	1.2018	0.0009343	777.410462891027	15.978	0.11526	15.978	15.934	16.049	0	426	31	1.03977710643793	0.0201143318791703	1.03977710643793	628.38323337154	0	12.1559792238952						277	14	3	NaN	NaN	NaN	0.0012706	1	35894	52.201	49.812	1	70885			20785	990	17534	18038	20785	20785		
VLFLLGADGGCITR	14	Unmodified	_VLFLLGADGGCITR_			0	0	0	P28331	P28331	P28331	NDUFS1	NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.403044	1490.79153	1.2218	0.00091192	-1.2933	-0.0009653	-0.071512	-5.3377E-05	746.402273339546	15.597	0.21281	15.597	15.473	15.686	1.7764E-15	423	43	1.04178812298108	0.0281600678501546	1.04178812298108	421.130714296058	0	11.3833794288481						472	25	4	NaN	NaN	NaN	1.2055E-05	1	18267	129.69	113.81	1	143730			20786	877	17535	18039	20786	20786		
VLFNITLDSIK	11	Unmodified	_VLFNITLDSIK_			0	0	0	Q9NPQ8	Q9NPQ8	Q9NPQ8	RIC8A	Synembryn-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.871371	1261.72819	-0.017961	-1.1349E-05	0.75087	0.00047445	0.73291	0.0004631	631.871915272086	16.36	0.079781	16.36	16.333	16.413	0	498	28	0.991429299781895	0.0181617640607624	0.991429299781895	401.442224505206	0	7.35392727156142						143	10	3	NaN	NaN	NaN	0.010883	1	11283	22.898	12.111	1	30934			20787	2994	17536	18040	20787	20787		
VLFPATGYLSIVWK	14	Unmodified	_VLFPATGYLSIVWK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.455602	1592.89665	1.2665	0.00101	0.077181	6.1548E-05	1.3437	0.0010715	797.455631830889	19.614	0.11531	19.614	19.561	19.676	0	363	55	1.08195024817156	0.0360811878816949	1.08195024817156	437.107826238213	0	14.5767974356612						384	14	4	NaN	NaN	NaN	0.0030417	1	21371	60	51.526	1	105780			20788	1127	17537	18041	20788	20788		
VLGAHILGPGAGEMVNEAALALEYGASCEDIAR	33	Unmodified	_VLGAHILGPGAGEMVNEAALALEYGASCEDIAR_			0	0	0	P09622	P09622	P09622	DLD	Dihydrolipoyl dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1118.88675	3353.63841	1.7283	0.0019338	-0.72152	-0.0008073	1.0068	0.0011265	1119.5540594244	19.579	0.11527	19.579	19.525	19.641	0	294	61	1.12800004657306	0.0399854559587778	1.12800004657306	680.464478973618	0	24.1211713937192						555	14	6	NaN	NaN	NaN	2.7899E-07	1	38581	42.536	41.242	1	101180			20789	607	17538	18042	20789	20789		
VLGATLLPDLIQK	13	Unmodified	_VLGATLLPDLIQK_			0	0	0	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.926677	1379.8388	0.49719	0.00034352	0.29947	0.00020691	0.79666	0.00055043	690.926756949221	16.688	0.21281	16.688	16.608	16.821	0	468	67	1.01159370163332	0.0443555739559077	1.01159370163332	409.227250589341	0	17.9434782452488						1200	25	4	NaN	NaN	NaN	4.0409E-11	1	14833	183.13	169.13	1	651090			20790	1277	17539	18043	20790	20790		
VLGEAMTGISQNAK	14	Unmodified	_VLGEAMTGISQNAK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.869034	1417.72351	2.0702	0.0014696	0.52431	0.00037219	2.5945	0.0018417	709.870296743191	7.9881	0.15084	7.9881	7.9438	8.0947	0	468	46	1.01159370163332	0.0302236288211217	1.01159370163332	409.11874825519	0	12.2233394405897						307	18	3	NaN	NaN	NaN	0.053954	1	16019	37.504	16.416	1	66019			20791	3406	17540	18044	20791	20791		
VLGELWPLFGGR	12	Unmodified	_VLGELWPLFGGR_			0	0	0	P28288	P28288	P28288	ABCD3	ATP-binding cassette sub-family D member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.377155	1342.73976	0.38728	0.0002604	-0.42584	-0.00028633	-0.038563	-2.5929E-05	672.37673360089	18.976	0.10639	18.976	18.94	19.046	0	543	37	0.961130371139249	0.0242609491796308	0.961130371139249	388.919511967063	0	9.81714530945015						314	13	4	NaN	NaN	NaN	0.0067102	1	13698	69.915	54.333	1	100020			20792	876	17541	18045	20792	20792		
VLGENYTLEDEEDSQICTVGR	21	Unmodified	_VLGENYTLEDEEDSQICTVGR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1214.05265	2426.09075	0.55797	0.00067741	-0.24454	-0.00029689	0.31343	0.00038052	1214.55386915151	11.713	0.044342	11.713	11.695	11.74	0	84	58	1.26725910986255	0.0376151518538832	1.26725910986255	510.454120649569	0	15.1514470191944						220	6	4	NaN	NaN	NaN	7.0627E-08	1	36471	74.643	73.7	1	35955			20793	1796	17542	18046	20793	20793		
VLGFSEPTVVTAALNCVGK	19	Unmodified	_VLGFSEPTVVTAALNCVGK_			0	0	0	O43395	O43395	O43395	PRPF3	U4/U6 small nuclear ribonucleoprotein Prp3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.521876	1961.0292	1.2071	0.0011848	0.2816	0.0002764	1.4887	0.0014612	982.023925522818	17.725	0.088678	17.725	17.69	17.779	0	180	28	1.203763835057	0.0178984919249219	1.203763835057	485.532760412493	0	7.21927668737152						263	11	5	NaN	NaN	NaN	7.2182E-07	1	30949	70.806	55.278	1	59827			20794	197	17543	18047	20794	20794		
VLGILAMIDEGETDWK	16	Unmodified	_VLGILAMIDEGETDWK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.45567	1788.89679	2.2141	0.0019826	-1.0807	-0.00096774	1.1334	0.0010149	895.454782135015	19.845	0.12416	19.845	19.818	19.942	0	276	133	1.13998907770044	0.087786854506734	1.13998907770044	460.120295381261	0	35.4323687975232						865	15	6	NaN	NaN	NaN	3.0416E-12	1	26945	135.5	134.69	1	438470			20795	1822	17544	18048	20795	20795		
VLGILAMIDEGETDWK	16	Oxidation (M)	_VLGILAM(Oxidation (M))IDEGETDWK_	VLGILAM(1)IDEGETDWK	VLGILAM(89)IDEGETDWK	0	1	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.453127	1804.8917	0.90209	0.00081499	0.040749	3.6815E-05	0.94284	0.00085181	903.954799053044	17.273	0.2217	17.273	17.149	17.371	0	276	61	1.13998907770044	0.0399579567227417	1.13998907770044	460.088925809582	0	16.126657479207						641	26	3	NaN	NaN	NaN	0.00025606	1	27353	89.382	73.095	1	191320			20796	1822	17544	18049	20796	20796	573	
VLGIQVDTDGSGR	13	Unmodified	_VLGIQVDTDGSGR_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.843873	1315.67319	1.2181	0.00080257	-1.844	-0.0012149	-0.62583	-0.00041233	658.843861977559	9.2125	0.26605	9.2125	9.1504	9.4164	0	528	46	0.971237000454584	0.030307312656189	0.971237000454584	393.091505489856	0	12.2663645987509						633	31	5	NaN	NaN	NaN	3.9179E-05	1	12845	79.889	67.823	1	191480			20797	951	17545	18050	20797	20797		
VLGIYTFTK	9	Unmodified	_VLGIYTFTK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.302593	1040.59063	-0.2069	-0.00010786	-1.2822	-0.00066839	-1.4891	-0.00077625	521.302168744042	12.219	0.11529	12.219	12.174	12.29	0	675	28	0.871889544407995	0.0183082845696197	0.871889544407995	353.850081488814	0	7.43028521035779						200	14	3	NaN	NaN	NaN	0.0073524	1	5242	48.157	26.883	1	46078			20798	1991	17546	18051	20798	20798		
VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK	33	Unmodified	_VLGKPEPAAQPVPESLPGEPEILPQAPANAHLK_			0	0	1	Q9NY61	Q9NY61	Q9NY61	AATF	Protein AATF	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	849.464687	3393.82964	1.4669	0.0012461	2.638	0.0022409	4.1049	0.003487	849.718400156444	12.52	0.088678	12.52	12.485	12.573	0	324	16	1.1079963157843	0.0100080630157755	1.1079963157843	891.151611156035	0	8.0493963328264						135	11	5	NaN	NaN	NaN	0.066518	1	38605	7.6099	7.5497	1	22033			20799	3110	17547	18052	20799	20799		
VLGLLGALDPYK	12	Unmodified	_VLGLLGALDPYK_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.873914	1257.73327	0.55894	0.00035206	-1.1238	-0.00070786	-0.56487	-0.0003558	629.873228592547	17.646	0.11526	17.646	17.601	17.716	0	537	37	0.965173861991602	0.0242508800099599	0.965173861991602	390.824512767415	0	9.81982494274808						288	14	3	NaN	NaN	NaN	0.00068247	1	11154	54.584	43.882	1	66567			20800	1049	17548	18053	20800	20800		
VLGLVLLR	8	Unmodified	_VLGLVLLR_			0	0	0	P14678;P63162	P14678	P14678	SNRPB;SNRPN	Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	441.810388	881.606223	-1.7503	-0.00077329	-0.57303	-0.00025317	-2.3233	-0.0010265	441.810237103257	15.083	0.14187	15.083	15.047	15.189	0	729	49	0.835224628594324	0.0326454272618066	0.835224628594324	339.76685459041	0	13.2800611449539						314	17	3	NaN	NaN	NaN	0.01221	1	2037	61.494	60.493	1	115380			20801	701	17549	18054	20801	20801		
VLGMDPLPSK	10	Unmodified	_VLGMDPLPSK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.791535	1055.56852	0.4534	0.00023975	-0.22355	-0.00011821	0.22985	0.00012154	528.791514419162	9.9928	0.23938	9.9928	9.9041	10.143	0	660	64	0.882057989648486	0.0427015643610472	0.882057989648486	357.910533262565	0	17.3269103063154						660	28	3	NaN	NaN	NaN	0.03778	1	5614	41.796	27.033	1	282540			20802	1606	17550	18055	20802	20802		
VLGMTLIQK	9	Unmodified	_VLGMTLIQK_			0	0	0	Q04760	Q04760	Q04760	GLO1	Lactoylglutathione lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.804445	1001.59434	0.49715	0.00024947	-0.66758	-0.000335	-0.17044	-8.5526E-05	501.804479131707	11.075	0.23055	11.075	11.004	11.234	0	681	46	0.867820189810857	0.0305222862766339	0.867820189810857	352.377554012627	0	12.3935450077251						624	27	4	NaN	NaN	NaN	0.00072695	1	4343	105.04	84.382	1	478030			20803	1545	17551	18056	20803	20803		
VLGPYTFSICDTSNFSDYIR	20	Unmodified	_VLGPYTFSICDTSNFSDYIR_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1178.05173	2354.0889	0.50103	0.00059024	0.82136	0.0009676	1.3224	0.0015578	1179.05560068722	18.018	0.28374	18.018	17.929	18.213	0	66	64	1.27913350869533	0.0415689526304328	1.27913350869533	515.326930724091	0	16.7469623982453						769	33	5	NaN	NaN	NaN	2.1773E-08	1	36086	97.949	94.509	1	143410			20804	804	17552	18057	20804	20804		
VLGQLTETGVVSPEQFMK	18	Unmodified	_VLGQLTETGVVSPEQFMK_			0	0	0	Q96EK6	Q96EK6	Q96EK6	GNPNAT1	Glucosamine 6-phosphate N-acetyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	982.013883	1962.01321	1.3385	0.0013144	0.34599	0.00033977	1.6845	0.0016542	982.015122807264	15.296	0.16844	15.296	15.189	15.358	0	210	73	1.18386433251387	0.047752276464526	1.18386433251387	477.504701814905	0	19.2605993000548						689	20	4	NaN	NaN	NaN	4.0084E-14	1	30964	118.87	101.6	1	136780			20805	2513	17553	18058	20805	20805		
VLGQVSCELVSPK	13	Unmodified	_VLGQVSCELVSPK_			0	0	0	Q06265	Q06265	Q06265	EXOSC9	Exosome complex component RRP45	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.381777	1414.749	1.8805	0.0013321	0.75517	0.00053495	2.6357	0.0018671	708.382547021686	9.5583	0.17733	9.5583	9.4696	9.647	0	414	34	1.04781950764076	0.0221089774592802	1.04781950764076	423.778154385717	0	8.94171333395474						420	21	4	NaN	NaN	NaN	0.00030603	1	15937	74.524	63.164	1	109840			20806	1559	17554	18059	20806	20806		
VLGTAFDPFLGGK	13	Unmodified	_VLGTAFDPFLGGK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.36117	1320.70779	0.79233	0.00052402	-1.3955	-0.00092294	-0.60318	-0.00039892	661.36069177956	15.624	0.24828	15.624	15.535	15.783	0	504	79	0.987393073566096	0.0524927542768682	0.987393073566096	399.614564366268	0	21.2446994963978						1103	29	5	NaN	NaN	NaN	2.9316E-06	1	13009	123.42	100.37	1	794200			20807	2415	17555	18060	20807	20807		
VLGTEDLYDYIDK	13	Unmodified	_VLGTEDLYDYIDK_			0	0	0	P68400	P68400	P68400	CSNK2A1	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	772.379954	1542.74536	1.1957	0.00092356	2.9156	0.002252	4.1113	0.0031755	772.383352293833	14.737	0.24832	14.737	14.675	14.923	0	393	61	1.0618830335572	0.0401676649584974	1.0618830335572	429.120848580676	0	16.2322797594319						641	29	5	NaN	NaN	NaN	0.0062204	1	19812	64.266	52.308	1	335480			20808	1450	17556	18061	20808	20808		
VLGTPVETIELTEDRR	16	Unmodified	_VLGTPVETIELTEDRR_			0	0	1	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.99854	1826.97379	0.80289	0.00048976	-1.3097	-0.00079894	-0.50685	-0.00030918	610.331634743692	11.181	0.16849	11.181	11.101	11.27	0	603	40	0.920633820089869	0.0263610708448411	0.920633820089869	557.285118884287	0	15.9570854112771						555	20	4	NaN	NaN	NaN	6.6732E-05	1	27904	88.734	66.73	1	209120			20809	867	17557	18062	20809	20809		
VLGTSVESIMATEDR	15	Unmodified	_VLGTSVESIMATEDR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.400895	1606.78724	2.2213	0.0017868	3.801	0.0030576	6.0223	0.0048444	804.403855475075	12.423	0.28372	12.423	12.343	12.626	0	384	88	1.06790610341098	0.0581909620520009	1.06790610341098	431.401828596745	0	23.5073920421033						1235	33	4	NaN	NaN	NaN	2.7852E-24	1	21818	198.33	164.14	1	1983100			20810	922	17558	18063	20810	20810		
VLGTSVESIMATEDR	15	Oxidation (M)	_VLGTSVESIM(Oxidation (M))ATEDR_	VLGTSVESIM(1)ATEDR	VLGTSVESIM(160)ATEDR	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.398352	1622.78215	2.3464	0.0019062	-1.0457	-0.00084956	1.3006	0.0010566	812.398212487911	8.831	0.10632	8.831	8.769	8.8753	0	378	40	1.07192009927972	0.0260891796066893	1.07192009927972	432.986900191816	0	10.5383535713516						352	13	4	NaN	NaN	NaN	1.2532E-16	1	22266	163.93	159.1	1	178150			20811	922	17558	18064	20811	20811	320	
VLGVNVMLR	9	Unmodified	_VLGVNVMLR_			0	0	0	P29373	P29373	P29373	CRABP2	Cellular retinoic acid-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.802237	999.589921	-0.42812	-0.0002144	-0.37907	-0.00018984	-0.80718	-0.00040424	500.801756908672	12.174	0.20397	12.174	12.121	12.325	0	687	37	0.863749705078866	0.024426303976944	0.863749705078866	350.734265668475	0	9.91854670163525						454	24	4	NaN	NaN	NaN	0.00030349	1	4284	81.32	62.918	1	172860			20812	887	17559	18065	20812	20812		
VLGVPIIVQASQAEK	15	Unmodified	_VLGVPIIVQASQAEK_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.458873	1550.90319	2.0117	0.001562	0.3332	0.00025872	2.3449	0.0018207	776.459105161022	13.93	0.16847	13.93	13.832	14.001	0	378	43	1.07192009927972	0.0280941036643514	1.07192009927972	433.156702154488	0	11.3526645329385						609	20	4	NaN	NaN	NaN	4.6241E-06	1	20101	64.266	61.964	1	227320			20813	1753	17560	18066	20813	20813		
VLGVPIIVQASQAEK	15	Unmodified	_VLGVPIIVQASQAEK_			0	0	0	Q14498	Q14498	Q14498	RBM39	RNA-binding protein 39	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.458873	1550.90319	2.2655	0.0017591	0.49055	0.00038089	2.7561	0.00214	776.459311525014	13.939	0.22168	13.939	13.832	14.054	0	279	67	1.13799159301878	0.0439779535971259	1.13799159301878	459.855809360769	0	17.7712362459454						907	26	4	NaN	NaN	NaN	0.0020099	1	20102	73.655	64.678	1	329420			20814	1753	17560	18066	20814	20814		
VLHAAFIPFGDITDIQIPLDYETEK	25	Unmodified	_VLHAAFIPFGDITDIQIPLDYETEK_			0	0	0	Q9UNP9	Q9UNP9	Q9UNP9	PPIE	Peptidyl-prolyl cis-trans isomerase E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	949.160131	2844.45856	1.5642	0.0014847	0.6012	0.00057063	2.1654	0.0020554	949.494721648189	19.818	0.044354	19.818	19.8	19.845	0	372	22	1.07593298845566	0.0140441447605724	1.07593298845566	649.535214559844	0	8.47837800146021						90	6	4	NaN	NaN	NaN	0.0005767	1	37991	43.904	42.943	1	16754			20815	3303	17561	18067	20815	20815		
VLHEAEGHIVTCETNTGEVYR	21	Unmodified	_VLHEAEGHIVTCETNTGEVYR_			0	0	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1207.57389	2413.13322	1.6212	0.0019577	-0.52346	-0.00063212	1.0977	0.0013256	1208.07466175636	6.3653	0.070926	6.3653	6.3387	6.4096	0	57	73	1.28506705146927	0.0475106348081664	1.28506705146927	517.643027676341	0	19.1379498998169						427	9	4	NaN	NaN	NaN	0.00057441	1	36409	61.067	57.427	1	82608			20816	1387	17562	18068	20816	20816		
VLHEAEGHIVTCETNTGEVYR	21	Unmodified	_VLHEAEGHIVTCETNTGEVYR_			0	0	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	805.385017	2413.13322	2.2119	0.0017814	-0.064206	-5.1711E-05	2.1477	0.0017297	805.719380946705	6.3653	0.14186	6.3653	6.3299	6.4717	0	564	193	0.946969335010767	0.129284968967412	0.946969335010767	572.177420921956	0	78.1165106121501						1914	17	6	NaN	NaN	NaN	6.1742E-30	1	36410	249.71	246.64	1	603400			20817	1387	17562	18068	20817	20817		
VLHEAEGHIVTCETNTGEVYR	21	Unmodified	_VLHEAEGHIVTCETNTGEVYR_			0	0	0	P62318	P62318	P62318	SNRPD3	Small nuclear ribonucleoprotein Sm D3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	604.290582	2413.13322	0.73997	0.00044716	1.5359	0.00092815	2.2759	0.0013753	604.542420498314	6.3653	0.17733	6.3653	6.3299	6.5072	0	627	46	0.90440375274676	0.0304503749625084	0.90440375274676	728.609536498643	0	24.5315585215793						569	21	6	NaN	NaN	NaN	3.8596E-05	1	36411	88.42	86.179	1	190940			20818	1387	17562	18068	20818	20818		
VLHFYNVK	8	Unmodified	_VLHFYNVK_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.287277	1018.56	0.64897	0.00033116	1.52	0.00077564	2.169	0.0011068	510.287920648227	6.454	0.09755	6.454	6.4096	6.5072	0	630	34	0.902373728295776	0.0223333690758126	0.902373728295776	366.325264890072	0	9.06639575825864						182	12	3	NaN	NaN	NaN	0.060751	1	4712	35.633	28.871	1	43719			20819	1247	17563	18069	20819	20819		
VLHGEQYLELYK	12	Unmodified	_VLHGEQYLELYK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	497.93292	1490.77693	0.28072	0.00013978	0.049384	2.459E-05	0.3301	0.00016437	497.932958405949	9.6204	0.13302	9.6204	9.576	9.709	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	529.907024495154	0	14.800704620415						378	16	4	NaN	NaN	NaN	0.002671	1	18264	72.042	68.434	1	171580			20820	1195	17564	18070	20820	20820		
VLHGEQYLELYK	12	Unmodified	_VLHGEQYLELYK_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.395741	1490.77693	1.8415	0.0013745	1.2375	0.00092364	3.079	0.0022982	746.396571439235	9.6292	0.17733	9.6292	9.5494	9.7268	0	375	52	1.07392668217569	0.034116624349938	1.07392668217569	434.122381507638	0	13.7912489349749						497	21	4	NaN	NaN	NaN	0.00037622	1	18266	75.474	62.3	1	158140			20821	1195	17564	18070	20821	20821		
VLHVSENPVPLTVR	14	Unmodified	_VLHVSENPVPLTVR_			0	0	0	Q8N1G4	Q8N1G4	Q8N1G4	LRRC47	Leucine-rich repeat-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.44884	1558.88313	1.7335	0.0013529	1.3384	0.0010446	3.0719	0.0023975	780.449622286914	9.4696	0.079793	9.4696	9.4342	9.514	0	330	31	1.10399226369747	0.0200257779077562	1.10399226369747	446.096666843142	0	8.09193421851654						175	10	3	NaN	NaN	NaN	0.00018492	1	20326	76.255	75.105	1	39263			20822	2241	17565	18071	20822	20822		
VLIDPVSVQDK	11	Unmodified	_VLIDPVSVQDK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.845353	1211.67615	1.0923	0.00066285	0.68782	0.0004174	1.7801	0.0010802	606.845875823942	9.576	0.16844	9.576	9.5228	9.6913	0	555	43	0.953040030838688	0.0283240376798207	0.953040030838688	386.070447564943	0	11.4738872975479						634	20	5	NaN	NaN	NaN	1.3818E-07	1	9791	127.94	101	1	383640			20823	1036	17566	18072	20823	20823		
VLIEGSINSVR	11	Unmodified	_VLIEGSINSVR_			0	0	0	P59998	P59998	P59998	ARPC4	Actin-related protein 2/3 complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.843145	1185.67174	1.1527	0.00068453	-8.2244	-0.004884	-7.0716	-0.0041994	593.838526587438	8.7068	0.14209	8.7068	8.6712	8.8133	0	525	25	0.973257487423603	0.0161627789282648	0.973257487423603	394.357813616627	0	6.54905638279996						169	17	3	NaN	NaN	NaN	0.00023982	1	9040	74.424	52.38	1	39176			20824	1301	17567	18073	20824	20824		
VLIEILCTR	9	Unmodified	_VLIEILCTR_			0	0	0	P20073	P20073	P20073	ANXA7	Annexin A7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.825909	1115.63727	0.69054	0.00038589	-2.6471	-0.0014793	-1.9565	-0.0010934	558.824196558697	13.788	0.27484	13.788	13.646	13.921	0	615	52	0.912521036363781	0.034500858375006	0.912521036363781	370.014610368594	0	13.9896190447063						570	32	3	NaN	NaN	NaN	0.067568	1	7156	33.426	18.891	1	271900			20825	777	17568	18074	20825	20825		
VLIFDDSFEHEVWQDASSFR	20	Unmodified	_VLIFDDSFEHEVWQDASSFR_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	809.71324	2426.11789	0.095028	7.6945E-05	0.12518	0.00010136	0.22021	0.00017831	810.047426661455	19.109	0.062059	19.109	19.082	19.144	0	582	40	0.934820374997243	0.0263318671085498	0.934820374997243	564.819478052667	0	15.9097424854986						247	8	5	NaN	NaN	NaN	0.000856	1	36472	33.456	28.858	1	49151			20826	1596	17569	18075	20826	20826		
VLIFSQMVR	9	Unmodified	_VLIFSQMVR_			0	0	0	O14646;Q3L8U1;Q9P2D1;Q8TD26;O14647;Q9HCK8	O14646;Q9HCK8	O14646	CHD1;CHD9;CHD7;CHD6;CHD2;CHD8	Chromodomain-helicase-DNA-binding protein 1;Chromodomain-helicase-DNA-binding protein 9;Chromodomain-helicase-DNA-binding protein 7;Chromodomain-helicase-DNA-binding protein 6;Chromodomain-helicase-DNA-binding protein 2;Chromodomain-helicase-DNA-binding protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.815344	1091.61614	-0.31014	-0.00016959	-0.57093	-0.00031219	-0.88107	-0.00048178	546.815110220842	13.664	0.11527	13.664	13.62	13.735	0	630	28	0.902373728295776	0.0182727556379993	0.902373728295776	365.998252358922	0	7.41133791862484						141	14	3	NaN	NaN	NaN	0.070536	1	6507	25.254	16.491	1	34820			20827	110;2964	17570	18076	20827	20827		
VLIIGGGDGGVLR	13	Unmodified	_VLIIGGGDGGVLR_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.366787	1224.71902	1.0404	0.00063812	-4.3165	-0.0026476	-3.2762	-0.0020095	613.36371289231	12.245	0.1419	12.245	12.201	12.343	0	534	25	0.967195187796614	0.0161694889209075	0.967195187796614	391.757640104219	0	6.54937173103275						297	17	3	NaN	NaN	NaN	0.023176	1	10147	35.33	11.754	1	247620			20828	771	17571	18077	20828	20828		
VLILGSGGLSIGQAGEFDYSGSQAVK	26	Unmodified	_VLILGSGGLSIGQAGEFDYSGSQAVK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1277.16339	2552.31223	-0.00019347	-2.471E-07	-0.44967	-0.0005743	-0.44986	-0.00057455	1277.66445210901	16.688	0.10642	16.688	16.67	16.777	0	63	43	1.28111162701928	0.0277069358040583	1.28111162701928	515.888498981006	0	11.1572553256545						296	13	4	NaN	NaN	NaN	0.00014082	1	37038	55.866	55.717	1	49427			20829	922	17572	18078	20829	20829		
VLILGSGGLSIGQAGEFDYSGSQAVK	26	Unmodified	_VLILGSGGLSIGQAGEFDYSGSQAVK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	851.778021	2552.31223	0.53852	0.0004587	2.0215	0.0017219	2.5601	0.0021806	852.113999777202	16.688	0.21283	16.688	16.661	16.874	0	228	40	1.17191150690002	0.0259173708713474	1.17191150690002	707.870830399033	0	15.6548943605734						505	25	5	NaN	NaN	NaN	0.016501	1	37039	45.587	45.534	1	105590			20830	922	17572	18078	20830	20830		
VLIPVFALGR	10	Unmodified	_VLIPVFALGR_			0	0	0	Q5TA45	Q5TA45	Q5TA45	CPSF3L	Integrator complex subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.847502	1083.68045	-0.78233	-0.00042469	-0.79302	-0.00043049	-1.5753	-0.00085517	542.847164678446	17.122	0.097532	17.122	17.078	17.176	0	663	49	0.880024865079826	0.0325187199489114	0.880024865079826	356.966244739136	0	13.1906333610626						265	12	2	NaN	NaN	NaN	0.0059819	1	6314	42.835	32.756	1	70947			20831	1997	17573	18079	20831	20831		
VLIQVGYEPLPPTIGR	16	Unmodified	_VLIQVGYEPLPPTIGR_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.506355	1750.99816	2.1283	0.0018655	0.32465	0.00028456	2.4529	0.00215	877.008118596037	15.065	0.48768	15.065	14.959	15.446	0	303	64	1.12200181823275	0.0419645157254074	1.12200181823275	452.935691337009	0	16.9404600178351						711	56	2	NaN	NaN	NaN	0.072679	1	25935	22.395	21.342	1	249170			20832	3458	17574	18080	20832	20832		
VLISDSLDPCCR	12	Unmodified	_VLISDSLDPCCR_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.839419	1433.66428	2.1915	0.0015732	-0.47867	-0.00034361	1.7129	0.0012296	717.839445362107	10.427	0.25717	10.427	10.347	10.605	0	459	46	1.01763759082241	0.030215279505817	1.01763759082241	411.518868415714	0	12.218650080575						879	30	5	NaN	NaN	NaN	7.8594E-12	1	16492	183	168.24	1	378390			20833	189	17575	18081	20833	20833		
VLISSLQDCLHGIESK	16	Unmodified	_VLISSLQDCLHGIESK_			0	0	0	Q16630	Q16630	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.317105	1797.92948	0.0047807	2.8699E-06	-3.5539	-0.0021335	-3.5491	-0.0021306	600.313846113223	13.327	0.13303	13.327	13.283	13.416	0	630	79	0.902373728295776	0.0528209570773358	0.902373728295776	546.298194183734	0	31.9778740909296						662	16	5	NaN	NaN	NaN	8.668E-08	1	27173	117.21	110.46	1	282910			20834	1895	17576	18082	20834	20834		
VLISSLQDCLHGIESK	16	Unmodified	_VLISSLQDCLHGIESK_			0	0	0	Q16630	Q16630	Q16630	CPSF6	Cleavage and polyadenylation specificity factor subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.972019	1797.92948	1.7325	0.0015592	0.44674	0.00040205	2.1792	0.0019612	899.9726376266	13.327	0.13303	13.327	13.283	13.416	0	201	43	1.18983705239708	0.0278707851664095	1.18983705239708	480.221278990877	0	11.2487202109979						467	16	5	NaN	NaN	NaN	1.9421E-24	1	27175	144.16	132.2	1	175550			20835	1895	17576	18082	20835	20835		
VLITTDLLAR	10	Unmodified	_VLITTDLLAR_			0	0	0	P60842;Q14240	P60842;Q14240	P60842	EIF4A1;EIF4A2	Eukaryotic initiation factor 4A-I;Eukaryotic initiation factor 4A-II;Eukaryotic initiation factor 4A-II, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.845156	1113.67576	0.64918	0.00036214	0.22279	0.00012428	0.87196	0.00048642	557.845510220283	13.416	0.26603	13.416	13.363	13.629	0	618	61	0.910492137470517	0.0405695604489756	0.910492137470517	369.199842532615	0	16.4507464841939						711	31	4	NaN	NaN	NaN	5.4939E-10	1	7096	133.68	95.358	1	624250			20836	1311;1739	17577	18083	20836	20836		
VLIVSEDPELPYMRPPLSK	19	Unmodified	_VLIVSEDPELPYMRPPLSK_			0	0	1	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	728.397535	2182.17078	0.51938	0.00037832	-0.31881	-0.00023222	0.20057	0.00014609	728.731755668564	14.71	0.2483	14.71	14.577	14.826	0	549	121	0.957085760909907	0.0809483689146412	0.957085760909907	578.640127780608	0	48.9402062442855						1756	29	5	NaN	NaN	NaN	1.2176E-07	1	34485	117.77	97.876	1	497530			20837	458	17578	18084	20837	20837		
VLLALHDR	8	Unmodified	_VLLALHDR_			0	0	0	Q9UBL3	Q9UBL3	Q9UBL3	ASH2L	Set1/Ash2 histone methyltransferase complex subunit ASH2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	468.784902	935.55525	0.61896	0.00029016	0.47768	0.00022393	1.0966	0.00051409	468.785236719669	5.9929	0.097619	5.9929	5.9573	6.055	0	684	25	0.86578508874114	0.016279679599705	0.86578508874114	351.887239607438	0	6.61666687325737						111	12	2	NaN	NaN	NaN	0.029851	1	2987	47.349	44.209	1	29094			20838	3178	17579	18085	20838	20838		
VLLAPLGDDFR	11	Unmodified	_VLLAPLGDDFR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.340238	1214.66592	1.0659	0.00064841	-0.71723	-0.00043632	0.34865	0.0002121	608.339657895783	14.498	0.133	14.498	14.453	14.586	0	495	37	0.993446994398923	0.0242106659523326	0.993446994398923	402.427902166139	0	9.8073148987051						356	16	4	NaN	NaN	NaN	0.0012218	1	9870	90.761	63.025	1	133390			20839	1901	17580	18086	20839	20839		
VLLATLSIPITPER	14	Unmodified	_VLLATLSIPITPER_			0	0	0	Q14152	Q14152	Q14152	EIF3A	Eukaryotic translation initiation factor 3 subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.963791	1521.91303	0.72314	0.00055101	0.85101	0.00064844	1.5742	0.0011994	761.96434392031	16.714	0.19508	16.714	16.635	16.83	0	399	49	1.0578662689527	0.0321341264646959	1.0578662689527	427.549670756726	0	12.9874026550043						724	23	4	NaN	NaN	NaN	1.8845E-11	1	19189	127.03	119.47	1	274050			20840	1728	17581	18087	20840	20840		
VLLCDPEAK	9	Unmodified	_VLLCDPEAK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.773342	1043.53213	1.4112	0.00073774	0.80863	0.00042273	2.2198	0.0011605	522.773746535964	6.454	0.16848	6.454	6.4096	6.5781	0	603	34	0.920633820089869	0.0223086119453004	0.920633820089869	373.618831490008	0	9.05345572287757						296	20	3	NaN	NaN	NaN	0.0016542	1	5316	77.072	49.335	1	78879			20841	1766	17582	18088	20841	20841		
VLLDAPCSGTGVISK	15	Unmodified	_VLLDAPCSGTGVISK_			0	0	0	P46087	P46087	P46087	NOP2	Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.905616	1515.79668	2.1891	0.0016614	-0.37044	-0.00028113	1.8187	0.0013802	758.905604936679	9.9218	0.21281	9.9218	9.8598	10.073	0	411	79	1.04982941439551	0.0522035796662552	1.04982941439551	424.316913045708	0	21.0994867072528						881	25	4	NaN	NaN	NaN	3.8812E-06	1	19009	112.73	105.17	1	336320			20842	1077	17583	18089	20842	20842		
VLLDFLDQHPFSFTPLIQR	19	Unmodified	_VLLDFLDQHPFSFTPLIQR_			0	0	0	Q9UI26	Q9UI26	Q9UI26	IPO11	Importin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.747556	2285.22084	0.19262	0.00014692	-0.93153	-0.00071053	-0.73892	-0.00056361	763.081392778836	19.907	0.01771	19.907	19.898	19.915	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	567.466038429196	0	14.6900521670051						104	3	4	NaN	NaN	NaN	8.0411E-08	1	35525	53.051	41.372	1	21725			20843	3233	17584	18090	20843	20843		
VLLDIFTGVR	10	Unmodified	_VLLDIFTGVR_			0	0	0	P49916	P49916	P49916	LIG3	DNA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.839874	1131.66519	-0.97886	-0.00055486	-1.6121	-0.00091383	-2.591	-0.0014687	566.838813242804	16.874	0.13306	16.874	16.83	16.963	0	657	34	0.884090832094921	0.0223581674407913	0.884090832094921	358.424583493109	0	9.06435918314611						244	16	3	NaN	NaN	NaN	0.012614	1	7586	60.892	47.244	1	72070			20844	1156	17585	18091	20844	20844		
VLLDLSAFLK	10	Unmodified	_VLLDLSAFLK_			0	0	0	Q3ZCQ8	Q3ZCQ8	Q3ZCQ8	TIMM50	Mitochondrial import inner membrane translocase subunit TIM50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.844625	1117.6747	-0.9802	-0.00054876	0.30396	0.00017017	-0.67624	-0.00037859	559.844627844757	19.295	0.079791	19.295	19.259	19.339	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	366.714992904837	0	9.05441356217506						192	10	3	NaN	NaN	NaN	0.002916	1	7212	69.716	30.391	1	68432			20845	1937	17586	18092	20845	20845		
VLLDNVENK	9	Unmodified	_VLLDNVENK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.290214	1042.56587	1.0625	0.00055495	0.74107	0.00038705	1.8036	0.000942	522.290912983565	6.454	0.22168	6.454	6.4096	6.6313	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	361.267295426814	0	9.07115866781572						340	26	3	NaN	NaN	NaN	0.057578	1	5299	36.24	24.174	1	142100			20846	2452	17587	18093	20846	20846		
VLLESEQFLTELTR	14	Unmodified	_VLLESEQFLTELTR_			0	0	0	P37108	P37108	P37108	SRP14	Signal recognition particle 14 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.456527	1676.8985	2.519	0.0021146	0.30964	0.00025993	2.8286	0.0023745	839.457387575038	17.681	0.1862	17.681	17.628	17.814	0	339	67	1.09798411722691	0.044081013383825	1.09798411722691	443.393918978931	0	17.8010346143992						1056	22	6	NaN	NaN	NaN	3.1718E-24	1	23826	210.4	183.82	1	1194200			20847	997	17588	18094	20847	20847		
VLLFNATGDRDPAALLK	17	Unmodified	_VLLFNATGDRDPAALLK_			0	0	1	Q05932	Q05932	Q05932	FPGS	Folylpolyglutamate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.343871	1813.00978	-0.47503	-0.00028756	-1.8388	-0.0011131	-2.3138	-0.0014007	605.676983186318	14.365	0.088648	14.365	14.329	14.418	0	681	43	0.867820189810857	0.0284933997158956	0.867820189810857	525.346019294278	0	17.2488428970165						267	11	4	NaN	NaN	NaN	0.0030876	1	27561	45.183	40.367	1	64273			20848	1555	17589	18095	20848	20848		
VLLGETGK	8	Unmodified	_VLLGETGK_			0	0	0	P62280	P62280	P62280	RPS11	40S ribosomal protein S11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	408.744911	815.475269	-0.68955	-0.00028185	0.49561	0.00020258	-0.19394	-7.9271E-05	408.745235014803	4.5475	0.15073	4.5475	4.4765	4.6273	0	813	34	0.778007628350577	0.0225266419611888	0.778007628350577	316.884270463766	0	9.17515232980872						287	18	3	NaN	NaN	NaN	0.018831	1	1163	41.025	25.526	1	115730			20849	1380	17590	18096	20849	20849		
VLLGPLSPYTIEFLR	15	Unmodified	_VLLGPLSPYTIEFLR_			0	0	0	Q9Y2P8	Q9Y2P8	Q9Y2P8	RCL1	RNA 3-terminal phosphate cyclase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.497998	1716.98144	1.7978	0.0015452	-0.31951	-0.00027462	1.4783	0.0012706	859.497857046593	19.712	0.088674	19.712	19.667	19.756	0	285	34	1.13399579921816	0.0219814046771438	1.13399579921816	457.848724711351	0	8.87495183468343						205	11	3	NaN	NaN	NaN	0.00015663	1	24979	72.846	71.004	1	45433			20850	3344	17591	18097	20850	20850		
VLLGQDEPLIHVFAK	15	Unmodified	_VLLGQDEPLIHVFAK_			0	0	0	Q9BT73	Q9BT73	Q9BT73	PSMG3	Proteasome assembly chaperone 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	560.322407	1677.94539	-0.27696	-0.00015519	-1.4377	-0.00080557	-1.7147	-0.00096076	560.321702316986	15.038	0.16848	15.038	14.959	15.127	0	675	34	0.871889544407995	0.0223798999073166	0.871889544407995	528.131479615166	0	13.5562236380708						542	20	5	NaN	NaN	NaN	0.00089531	1	23870	67.548	63.02	1	241570			20851	2730	17592	18098	20851	20851		
VLLGQDEPLIHVFAK	15	Unmodified	_VLLGQDEPLIHVFAK_			0	0	0	Q9BT73	Q9BT73	Q9BT73	PSMG3	Proteasome assembly chaperone 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.979973	1677.94539	1.4757	0.0012396	3.2298	0.002713	4.7056	0.0039526	840.484845469337	15.038	0.15962	15.038	14.976	15.136	-1.7764E-15	222	37	1.17589687683038	0.0239089385637625	1.17589687683038	474.854633800444	0	9.65498802654815						338	19	3	NaN	NaN	NaN	0.020206	1	23873	29.98	23.952	1	73019			20852	2730	17592	18098	20852	20852		
VLLGSVSGLAGGFVGTPADLVNVR	24	Unmodified	_VLLGSVSGLAGGFVGTPADLVNVR_			0	0	0	Q9UBX3	Q9UBX3	Q9UBX3	SLC25A10	Mitochondrial dicarboxylate carrier	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1149.64444	2297.27433	-0.52181	-0.00059989	0.084647	9.7313E-05	-0.43716	-0.00050258	1150.14594652297	19.055	0.079801	19.055	19.029	19.109	0	66	46	1.27913350869533	0.0296839714567931	1.27913350869533	515.401737112011	0	11.9605735829867						245	10	4	NaN	NaN	NaN	7.6803E-14	1	35617	115.29	114.48	1	46997			20853	3194	17593	18099	20853	20853		
VLLIESLATMEPDSRPELQEK	21	Unmodified	_VLLIESLATMEPDSRPELQEK_			0	0	1	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.089319	2397.24613	0.58209	0.00046572	-0.17667	-0.00014135	0.40542	0.00032437	800.423422039679	15.748	0.088673	15.748	15.712	15.801	0	531	40	0.969216233931596	0.0262663358758335	0.969216233931596	585.641645854005	0	15.871236607829						262	11	4	NaN	NaN	NaN	0.0018565	1	36329	34.338	33.463	1	50603			20854	2013	17594	18100	20854	20854		
VLLISDPTTDK	11	Unmodified	_VLLISDPTTDK_			0	0	0	P14735	P14735	P14735	IDE	Insulin-degrading enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.337361	1200.66017	0.53203	0.00031993	2.922	0.0017571	3.454	0.002077	601.338682398481	9.5583	0.11527	9.5583	9.514	9.6292	0	558	34	0.951016745717027	0.0222592210224549	0.951016745717027	385.290620655774	0	9.01800007379427						193	14	4	NaN	NaN	NaN	0.0023271	1	9492	67.881	55.285	1	62012			20855	702	17595	18101	20855	20855		
VLLLIDDEYK	10	Unmodified	_VLLLIDDEYK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.842279	1219.67001	1.3251	0.00080941	-0.31941	-0.00019511	1.0057	0.0006143	610.842054954769	13.531	0.15962	13.531	13.469	13.629	0	516	37	0.979317271586824	0.0242341119852805	0.979317271586824	396.685912360583	0	9.81635992955859						329	19	4	NaN	NaN	NaN	0.00051154	1	10015	74.269	55.013	1	90169			20856	2268	17596	18102	20856	20856		
VLLLSSPGLEELYR	14	Unmodified	_VLLLSSPGLEELYR_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.950881	1587.88721	1.2118	0.00096335	0.2062	0.00016392	1.418	0.0011273	794.951137552269	16.714	0.17733	16.714	16.652	16.83	0	351	61	1.08996939197032	0.0400957372685233	1.08996939197032	440.359533485084	0	16.1991155791907						747	21	5	NaN	NaN	NaN	8.31E-08	1	21221	132.44	119.16	1	401720			20857	2237	17597	18103	20857	20857		
VLLMELEEAR	10	Unmodified	_VLLMELEEAR_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.826106	1201.63766	0.52438	0.00031559	0.45112	0.00027149	0.9755	0.00058708	601.826216636365	13.105	0.15969	13.105	13.043	13.203	0	534	43	0.967195187796614	0.0283005258697965	0.967195187796614	391.841470760109	0	11.4654413297572						405	19	3	NaN	NaN	NaN	0.00011427	1	9518	76.605	59.209	1	114120			20858	667	17598	18104	20858	20858		
VLLPEYGGTK	10	Unmodified	_VLLPEYGGTK_			0	0	0	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.802957	1075.59136	1.3299	0.00071653	-0.11728	-6.3193E-05	1.2126	0.00065334	538.803165237463	8.3608	0.31042	8.3608	8.2632	8.5736	0	657	79	0.884090832094921	0.0528356152487123	0.884090832094921	358.649382225788	0	21.4338392397622						1478	36	4	NaN	NaN	NaN	0.00023757	1	6113	90.761	65.507	1	1516000			20859	1347	17599	18105	20859	20859		
VLLPVLLNK	9	Unmodified	_VLLPVLLNK_			0	0	0	O00186	O00186	O00186	STXBP3	Syntaxin-binding protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.844428	1007.6743	-0.63456	-0.00032036	-1.8143	-0.00091595	-2.4489	-0.0012363	504.843480615288	14.631	0.12413	14.631	14.568	14.693	0	693	55	0.85967808974117	0.0366292905732287	0.85967808974117	349.042927045355	0	14.8720724069214						257	15	3	NaN	NaN	NaN	0.0021942	1	4462	63.301	46.754	1	60031			20860	59	17600	18106	20860	20860		
VLLQNTSFFSSLLNEMAHK	19	Unmodified	_VLLQNTSFFSSLLNEMAHK_			0	0	0	Q9UI26	Q9UI26	Q9UI26	IPO11	Importin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.045385	2178.11432	0.41661	0.0003029	0.62323	0.00045312	1.0398	0.00075602	727.379720085926	19.658	0.053204	19.658	19.632	19.685	0	477	28	1.0055473068722	0.0181441995838212	1.0055473068722	607.946425264584	0	10.9698481621741						133	7	4	NaN	NaN	NaN	0.065878	1	34425	11.478	11.398	1	29502			20861	3233	17601	18107	20861	20861		
VLLSDSNLHDA	11	Unmodified	_VLLSDSNLHDA_			0	0	0	Q6FI81	Q6FI81	Q6FI81	CIAPIN1	Anamorsin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.30131	1182.58807	1.5796	0.00093558	-0.1418	-8.3991E-05	1.4378	0.00085159	592.301050003808	7.9615	0.26615	7.9615	7.8995	8.1656	0	582	46	0.934820374997243	0.0303829256271585	0.934820374997243	378.794662379628	0	12.3113384804848						388	31	2	NaN	NaN	NaN	0.00076914	1	8939	83.623	57.167	1	192670			20862	2031	17602	18108	20862	20862		
VLLSEFRPSGELFAIK	16	Unmodified	_VLLSEFRPSGELFAIK_			0	0	1	Q16512	Q16512	Q16512	PKN1	Serine/threonine-protein kinase N1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.67685	1805.00872	-0.90588	-0.00054596	-1.6949	-0.0010215	-2.6008	-0.0015674	602.675746893203	15.757	0.079823	15.757	15.721	15.801	0	705	37	0.851531465363931	0.0244432719031649	0.851531465363931	515.502758362384	0	14.7975437221195						258	10	4	NaN	NaN	NaN	0.013929	1	27359	36.952	21.336	1	60756			20863	1882	17603	18109	20863	20863		
VLLSLEHGLWAPNLHFHSPNPEIPALLDGR	30	Unmodified	_VLLSLEHGLWAPNLHFHSPNPEIPALLDGR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	836.449105	3341.76732	0.88992	0.00074437	-0.12592	-0.00010533	0.764	0.00063905	836.700229705453	17.716	0.088666	17.716	17.672	17.761	0	510	34	0.983355730988811	0.0222038520438094	0.983355730988811	790.954618211404	0	17.859497598569						256	11	5	NaN	NaN	NaN	0.028134	1	38572	6.2255	5.8006	1	48632			20864	1127	17604	18110	20864	20864		
VLLSLEHGLWAPNLHFHSPNPEIPALLDGR	30	Unmodified	_VLLSLEHGLWAPNLHFHSPNPEIPALLDGR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	836.449105	3341.76732	1.5431	0.0012907	-0.065571	-5.4847E-05	1.4775	0.0012359	836.699832249207	17.716	0.097528	17.716	17.672	17.77	0	438	70	1.03173026378327	0.0462981295067895	1.03173026378327	829.86430135797	0	37.2395443324937						666	12	6	NaN	NaN	NaN	1.1965E-06	1	38573	60.329	58.602	1	144480			20865	1127	17604	18110	20865	20865		
VLLTHEVMCSR	11	Unmodified	_VLLTHEVMCSR_			0	0	0	Q9HAK2	Q9HAK2	Q9HAK2	EBF2	Transcription factor COE2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.841765	1343.66898	1.849	0.0012441	-0.99315	-0.00066823	0.85583	0.00057584	672.841105279791	6.4363	0.19506	6.4363	6.3831	6.5781	0	549	97	0.957085760909907	0.0646333058769899	0.957085760909907	387.280142015718	0	26.1535558267931						969	23	4	NaN	NaN	NaN	0.015141	1	13709	33.396	9.5597	1	423370			20866	2944	17605	18111	20866	20866		
VLLTTQGVDMISK	13	Unmodified	_VLLTTQGVDMISK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.891977	1403.7694	1.0038	0.00070553	0.70612	0.00049633	1.7099	0.0012019	702.892789117839	12.05	0.15076	12.05	11.997	12.148	0	456	43	1.01965166402748	0.0281950841620375	1.01965166402748	412.417228907732	0	11.4040303067798						509	18	5	NaN	NaN	NaN	4.6731E-06	1	15589	103.69	77.23	1	237530			20867	1737	17606	18112	20867	20867		
VLLTTQGVDMISK	13	Oxidation (M)	_VLLTTQGVDM(Oxidation (M))ISK_	VLLTTQGVDM(1)ISK	VLLTTQGVDM(47)ISK	0	1	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.889435	1419.76432	1.7026	0.0012103	1.2239	0.00087005	2.9265	0.0020804	710.890266631197	9.6204	0.097533	9.6204	9.576	9.6736	0	453	34	1.02166545906632	0.0221517485964946	1.02166545906632	413.186327335645	0	8.95870518615044						234	12	3	NaN	NaN	NaN	0.021306	1	16094	47.361	39.36	1	66806			20868	1737	17606	18113	20868	20868	560	
VLLVLELQGLQK	12	Unmodified	_VLLVLELQGLQK_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.92922	1351.84389	0.29836	0.00020197	-0.55269	-0.00037413	-0.25433	-0.00017217	676.928708498029	17.007	0.19506	17.007	16.954	17.149	0	453	61	1.02166545906632	0.0402675771022469	1.02166545906632	413.386550153679	0	16.2930777718155						719	23	4	NaN	NaN	NaN	9.5002E-08	1	13949	159.11	142.65	1	277120			20869	1771	17607	18114	20869	20869		
VLLVPGPEK	9	Unmodified	_VLLVPGPEK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.29731	950.580068	-0.5953	-0.00028354	-0.42619	-0.00020299	-1.0215	-0.00048654	476.297037868883	8.3076	0.15084	8.3076	8.21	8.3608	0	747	34	0.822982596624503	0.0224515301209383	0.822982596624503	334.414181598423	0	9.12304841174125						226	18	2	NaN	NaN	NaN	0.011181	1	3265	60.589	49.229	1	57465			20870	2647	17608	18115	20870	20870		
VLLYLLSPR	9	Unmodified	_VLLYLLSPR_			0	0	0	Q15397	Q15397	Q15397	KIAA0020	Pumilio domain-containing protein KIAA0020	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.33951	1072.66447	0.44869	0.0002411	-0.85125	-0.00045741	-0.40256	-0.00021631	537.339161611594	15.251	0.14186	15.251	15.18	15.322	0	600	49	0.922661313351899	0.0324421500815294	0.922661313351899	374.309198117383	0	13.1612705621154						328	17	3	NaN	NaN	NaN	0.0036061	1	6031	69.905	50.417	1	71727			20871	1842	17609	18116	20871	20871		
VLMAQHFDEVWNSEACNK	18	Unmodified	_VLMAQHFDEVWNSEACNK_			0	0	0	P46063	P46063	P46063	RECQL	ATP-dependent DNA helicase Q1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.662946	2176.96701	0.17914	0.00013017	1.7958	0.0013049	1.9749	0.0014351	726.998655490769	11.882	0.079806	11.882	11.837	11.917	0	546	52	0.959108205975751	0.034395858934352	0.959108205975751	579.871620781198	0	20.7955498077852						297	10	3	NaN	NaN	NaN	0.0014267	1	34403	43.518	37.314	1	62535			20872	1076	17610	18117	20872	20872		
VLNEECDQNWYK	12	Unmodified	_VLNEECDQNWYK_			0	0	0	P62993	P62993	P62993	GRB2	Growth factor receptor-bound protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.351205	1596.68786	2.2192	0.0017739	-0.83265	-0.00066558	1.3866	0.0011084	799.350375910762	8.077	0.19515	8.077	8.0237	8.2188	0	393	37	1.0618830335572	0.0240939446089616	1.0618830335572	428.991895962773	0	9.73375282623704						565	23	5	NaN	NaN	NaN	3.6071E-07	1	21466	141.44	123.71	1	229530			20873	1420	17611	18118	20873	20873		
VLNMKPPEILSMIEEAAGTR	20	Unmodified	_VLNMKPPEILSMIEEAAGTR_			0	0	1	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.721913	2198.14391	-0.45131	-0.00033114	-0.23652	-0.00017354	-0.68783	-0.00050468	734.055458827849	19.587	0.070941	19.587	19.543	19.614	0	591	25	0.928742107665821	0.0162098367648951	0.928742107665821	561.478179269758	0	9.79978140098297						74	9	2	NaN	NaN	NaN	0.00025933	1	34660	47.844	47.539	1	14488			20874	423	17612	18119	20874	20874		
VLNNMEIGTSLFDEEGAK	18	Unmodified	_VLNNMEIGTSLFDEEGAK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.974955	1965.93536	1.891	0.0018607	1.0397	0.001023	2.9307	0.0028837	984.477537586766	14.967	0.23942	14.967	14.914	15.154	0	231	82	1.16991841121525	0.0537988442940078	1.16991841121525	471.873081612058	0	21.6991426075694						1323	28	6	NaN	NaN	NaN	1.1267E-26	1	31032	199.84	191.88	1	1184000			20875	484	17613	18120	20875	20875		
VLNNMEIGTSLFDEEGAK	18	Oxidation (M)	_VLNNM(Oxidation (M))EIGTSLFDEEGAK_	VLNNM(1)EIGTSLFDEEGAK	VLNNM(190)EIGTSLFDEEGAK	0	1	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.972412	1981.93027	2.7186	0.0026967	-0.55809	-0.00055361	2.1605	0.0021431	991.972971387316	12.76	0.204	12.76	12.706	12.91	0	231	97	1.16991841121525	0.0637397212354487	1.16991841121525	471.846389234009	0	25.707226271008						1021	24	6	NaN	NaN	NaN	8.5728E-19	1	31311	185.57	176.8	1	394410			20876	484	17613	18121	20876	20876	76	
VLNSYWVGEDSTYK	14	Unmodified	_VLNSYWVGEDSTYK_			0	0	0	P61313	P61313	P61313	RPL15	60S ribosomal protein L15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.896303	1659.77805	3.2297	0.0026835	-0.16839	-0.00013992	3.0613	0.0025436	830.896587945459	10.817	0.26602	10.817	10.746	11.012	-1.7764E-15	396	100	1.05987478976334	0.0662173211543302	1.05987478976334	428.040586464902	0	26.7424994487915						1715	31	6	NaN	NaN	NaN	6.3007E-17	1	23323	181.44	153.85	1	1612100			20877	1341	17614	18122	20877	20877		
VLNTNIDGR	9	Unmodified	_VLNTNIDGR_			0	0	0	P62269	P62269	P62269	RPS18	40S ribosomal protein S18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.272355	1000.53016	0.3021	0.00015144	0.73783	0.00036986	1.0399	0.00052129	501.272738318151	4.9021	0.31919	4.9021	4.8578	5.177	0	759	61	0.814815566123307	0.0408351714609358	0.814815566123307	330.85983946397	0	16.5813207746259						810	37	4	NaN	NaN	NaN	4.5625E-06	1	4299	154.28	100.6	1	952710			20878	1378	17615	18123	20878	20878		
VLNYAPGPLDTDMQQLAR	18	Unmodified	_VLNYAPGPLDTDMQQLAR_			0	0	0	P35270	P35270	P35270	SPR	Sepiapterin reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.50676	2000.99896	2.0662	0.0020694	-1.5064	-0.0015086	0.55988	0.00056073	1001.5052158749	14.48	0.15962	14.48	14.4	14.56	0	225	73	1.17390432875292	0.0477916352586294	1.17390432875292	473.422595686698	0	19.2738364294884						1092	19	5	NaN	NaN	NaN	8.2701E-05	1	31653	79.235	73.848	1	275050			20879	969	17616	18124	20879	20879		
VLPAQATEYAFAFIQVPQDDDAR	23	Unmodified	_VLPAQATEYAFAFIQVPQDDDAR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	855.758849	2564.25472	0.31473	0.00026933	0.13097	0.00011208	0.4457	0.00038142	856.093437828634	19.082	0.097526	19.082	19.029	19.126	0	513	97	0.981336640919867	0.064606493676434	0.981336640919867	592.742767006508	0	39.0233384055258						628	12	4	NaN	NaN	NaN	0.011166	1	37085	29.664	28.413	1	134540			20880	2108	17617	18125	20880	20880		
VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR	32	Unmodified	_VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR_			0	0	1	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	877.690221	3506.73178	1.7167	0.0015068	-1.6988	-0.0014911	0.0179	1.571E-05	877.939874766046	18.781	0.070962	18.781	18.754	18.825	0	339	25	1.09798411722691	0.0160250356219411	1.09798411722691	882.982785053669	0	12.887099514502						183	9	6	NaN	NaN	NaN	0.03841	1	38653	11.303	11.3	1	37674			20881	2108	17618	18126	20881	20881		
VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR	32	Unmodified	_VLPAQATEYAFAFIQVPQDDDARTDAVDSVVR_			0	0	1	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1169.91787	3506.73178	1.5354	0.0017962	0.2573	0.00030102	1.7927	0.0020973	1170.25183900555	18.781	0.062095	18.781	18.754	18.816	0	198	37	1.1918274123006	0.0238859627305146	1.1918274123006	718.838454885175	0	14.4065729361806						215	8	4	NaN	NaN	NaN	0.0048964	1	38654	26.522	26.397	1	42609			20882	2108	17618	18126	20882	20882		
VLPEFDTPGHTLSWGK	16	Unmodified	_VLPEFDTPGHTLSWGK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.305305	1782.89408	-0.75295	-0.00044823	-0.37139	-0.00022109	-1.1243	-0.00066932	595.639316018686	12.706	0.14191	12.706	12.653	12.795	0	750	85	0.820941264895493	0.057153368635218	0.820941264895493	497.030908407122	0	34.6029514485496						993	17	4	NaN	NaN	NaN	0.029086	1	26758	29.98	28.928	1	274160			20883	562	17619	18127	20883	20883		
VLPEFDTPGHTLSWGK	16	Unmodified	_VLPEFDTPGHTLSWGK_			0	0	0	P07686	P07686	P07686	HEXB	Beta-hexosaminidase subunit beta;Beta-hexosaminidase subunit beta chain B;Beta-hexosaminidase subunit beta chain A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.454319	1782.89408	2.3999	0.0021418	-1.0403	-0.00092844	1.3595	0.0012133	892.954778377675	12.715	0.15964	12.715	12.653	12.813	0	258	40	1.15196821829984	0.0259458875864387	1.15196821829984	464.967334809974	0	10.4725026339274						439	19	3	NaN	NaN	NaN	0.0087745	1	26760	45.654	40.56	1	122890			20884	562	17619	18127	20884	20884		
VLPFFERPDFQLFTGNK	17	Unmodified	_VLPFFERPDFQLFTGNK_			0	0	1	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.694792	2054.06255	-0.2155	-0.00014777	1.1191	0.00076736	0.90359	0.00061959	686.0300870202	18.009	0.10642	18.009	17.974	18.08	0	606	46	0.918606045818476	0.0304334915876326	0.918606045818476	555.594693397243	0	18.4068965195768						396	13	5	NaN	NaN	NaN	0.017101	1	32600	46.358	45.415	1	131040			20885	2549	17620	18128	20885	20885		
VLPGDYEILATHPTWALK	18	Unmodified	_VLPGDYEILATHPTWALK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.54621	2023.07786	0.32193	0.00032596	-2.9004	-0.0029368	-2.5785	-0.0026108	1012.54234926935	15.278	0.19506	15.278	15.18	15.375	0	63	76	1.28111162701928	0.0495004147022173	1.28111162701928	516.61926653688	0	19.9614673673913						406	23	3	NaN	NaN	NaN	0.019937	1	32036	42.941	38.124	1	77406			20886	1452;1818	17621	18129	20886	20886		
VLPGDYEILATHPTWALK	18	Unmodified	_VLPGDYEILATHPTWALK_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.366564	2023.07786	0.82701	0.00055854	0.62171	0.00041988	1.4487	0.00097842	675.366729955551	15.313	0.18618	15.313	15.225	15.411	0	480	43	1.00353128488872	0.0282301658273657	1.00353128488872	607.021840916704	0	17.0760269141101						420	22	4	NaN	NaN	NaN	0.010921	1	32037	44.571	42.024	1	96535			20887	1452;1818	17621	18129	20887	20887		
VLPGMHHPIQMK	12	Unmodified	_VLPGMHHPIQMK_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	463.24942	1386.72643	-0.82809	-0.00038361	0.18037	8.3556E-05	-0.64772	-0.00030006	463.249746120382	5.2923	0.15076	5.2923	5.2302	5.381	0	753	31	0.81889964927511	0.0204147391156737	0.81889964927511	496.884971939041	0	12.387081960059						288	18	4	NaN	NaN	NaN	0.009157	1	15054	72.038	58.044	1	127680			20888	2437	17622	18130	20888	20888		
VLPGVDALSNI	11	Unmodified	_VLPGVDALSNI_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.313689	1096.61282	-0.81339	-0.00044681	-0.28185	-0.00015482	-1.0952	-0.00060163	549.313549073645	16.927	0.33698	16.927	16.821	17.158	0	663	79	0.880024865079826	0.0528429466226114	0.880024865079826	356.913391641946	0	21.4316163688395						1514	39	5	NaN	NaN	NaN	0.0059017	1	6632	69.716	50.228	1	1503200			20889	484	17623	18131	20889	20889		
VLPIMFPALYR	11	Unmodified	_VLPIMFPALYR_			0	0	0	Q14738	Q14738	Q14738	PPP2R5D	Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit delta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.380852	1318.74715	0.61025	0.00040299	-1.2809	-0.00084589	-0.67067	-0.0004429	660.380369296224	18.381	0.13299	18.381	18.311	18.444	0	525	43	0.973257487423603	0.0282809550509913	0.973257487423603	393.899718094394	0	11.4459537850718						458	16	4	NaN	NaN	NaN	0.048627	1	12943	37.722	35.563	1	145540			20890	1772	17624	18132	20890	20890		
VLPLEALVTDAGEVTEAGK	19	Unmodified	_VLPLEALVTDAGEVTEAGK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.013968	1911.02007	-0.28828	-0.00018393	1.0604	0.00067653	0.77209	0.0004926	638.014529303328	19.446	0.1419	19.446	19.357	19.499	0	627	28	0.90440375274676	0.0182676885200254	0.90440375274676	547.279349794501	0	11.0542759968923						237	17	3	NaN	NaN	NaN	0.00083098	1	29856	61.067	43.652	1	51873			20891	2420	17625	18133	20891	20891		
VLPMNTGVEAGETACK	16	Unmodified	_VLPMNTGVEAGETACK_			0	0	0	P04181	P04181	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.902747	1675.79094	3.7469	0.0031433	-2.6438	-0.0022179	1.1031	0.00092542	839.402466694173	7.6777	0.16858	7.6777	7.6156	7.7842	0	357	34	1.08596037261705	0.0220480903949298	1.08596037261705	438.540811147987	0	8.90362824451455						429	20	4	NaN	NaN	NaN	0.00069753	1	23784	37.146	32.9	1	121310			20892	510	17626	18134	20892	20892		
VLPQLISTITASVQNPALR	19	Unmodified	_VLPQLISTITASVQNPALR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.396635	2020.16807	-0.31861	-0.00021487	0.53456	0.00036051	0.21595	0.00014564	674.731938371249	19.038	0.079793	19.038	18.993	19.073	0	558	31	0.951016745717027	0.0202370558589571	0.951016745717027	575.262182849533	0	12.2412281174862						108	10	2	NaN	NaN	NaN	0.051314	1	31998	22.395	22.315	1	24358			20893	2420	17627	18135	20893	20893		
VLPSDLDLLLHMNNAR	16	Unmodified	_VLPSDLDLLLHMNNAR_			0	0	0	Q8WUY1	Q8WUY1	Q8WUY1	THEM6	Protein THEM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	607.661094	1819.96145	-0.78861	-0.00047921	-0.86318	-0.00052452	-1.6518	-0.0010037	607.994719466651	16.324	0.22171	16.324	16.227	16.448	0	624	34	0.906433495720521	0.0223240803246195	0.906433495720521	548.705178551892	0	13.5137751841245						463	26	4	NaN	NaN	NaN	0.001523	1	27729	46.068	38.104	1	104500			20894	2375	17628	18136	20894	20894		
VLPSFWIPSLTPEAK	15	Unmodified	_VLPSFWIPSLTPEAK_			0	0	0	Q9Y314	Q9Y314	Q9Y314	NOSIP	Nitric oxide synthase-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.969074	1683.92359	1.5619	0.0013166	-3.3777	-0.0028473	-1.8159	-0.0015307	842.966765251077	18.71	0.13301	18.71	18.639	18.772	0	345	85	1.09397730668811	0.0560722236139555	1.09397730668811	441.760774568075	0	22.6426167928886						565	16	4	NaN	NaN	NaN	0.041313	1	24027	32.051	26.663	1	140050			20895	3363	17629	18137	20895	20895		
VLPSITTEILK	11	Unmodified	_VLPSITTEILK_			0	0	0	P35232	P35232	P35232	PHB	Prohibitin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.373746	1212.73294	0.85176	0.00051734	-0.23615	-0.00014343	0.61561	0.00037391	607.3737254725	14.09	0.22168	14.09	14.001	14.223	0	561	61	0.948993180460448	0.0404853363286275	0.948993180460448	384.427325662558	0	16.4001911645055						1073	26	4	NaN	NaN	NaN	0.013276	1	9819	40.386	30.298	1	913100			20896	960	17630	18138	20896	20896		
VLPSIVNEVLK	11	Unmodified	_VLPSIVNEVLK_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.873914	1209.73327	0.54343	0.00032925	-0.91102	-0.00055197	-0.3676	-0.00022272	605.87335300747	15.402	0.15973	15.402	15.34	15.5	0	561	76	0.948993180460448	0.0506101881131192	0.948993180460448	384.438054083743	0	20.5022360914959						458	19	3	NaN	NaN	NaN	0.00066522	1	9735	72.365	53.109	1	124110			20897	2660	17631	18139	20897	20897		
VLPSIVNEVLK	11	Unmodified	_VLPSIVNEVLK_			0	0	0	Q99623	Q99623	Q99623	PHB2	Prohibitin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.873914	1209.73327	0.41787	0.00025317	-0.37656	-0.00022815	0.041311	2.5029E-05	605.873689426802	15.331	0.16844	15.331	15.207	15.375	0	564	73	0.946969335010767	0.0486026024446214	0.946969335010767	383.618190020714	0	19.6889610790723						742	20	4	NaN	NaN	NaN	0.00078508	1	9736	72.365	43.056	1	286800			20898	2660	17631	18139	20898	20898		
VLQALEGLK	9	Unmodified	_VLQALEGLK_			0	0	0	P39019	P39019	P39019	RPS19	40S ribosomal protein S19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.800217	969.585882	0.39066	0.00018978	-0.59564	-0.00028936	-0.20498	-9.9577E-05	485.800259377052	9.9396	0.26592	9.9396	9.8776	10.143	0	699	43	0.85560534332665	0.0285131915088889	0.85560534332665	347.57308987947	0	11.5829314909806						768	31	4	NaN	NaN	NaN	0.0017759	1	3632	77.072	44.944	1	535940			20899	1009	17632	18140	20899	20899		
VLQALGSEPIQYAVPVVK	18	Unmodified	_VLQALGSEPIQYAVPVVK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.051126	1910.0877	1.1763	0.0011246	0.37415	0.00035771	1.5504	0.0014823	956.552951918468	14.95	0.097567	14.95	14.905	15.003	0	90	130	1.26329880838669	0.0853160097594756	1.26329880838669	509.641414776279	0	34.4182798465656						952	12	4	NaN	NaN	NaN	6.1593E-14	1	29841	141.88	132.3	1	269350			20900	54	17633	18141	20900	20900		
VLQAQGSSDPEEESVLYSNR	20	Unmodified	_VLQAQGSSDPEEESVLYSNR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1104.52439	2207.03422	2.1322	0.0023551	-2.0662	-0.0022822	0.065987	7.2884E-05	1105.02367215786	8.9553	0.15069	8.9553	8.9021	9.0528	0	150	100	1.22363604450103	0.0655738689639465	1.22363604450103	493.161331006117	0	26.4281986811427						1013	18	5	NaN	NaN	NaN	7.4093E-16	1	34751	153.56	143.24	1	261500			20901	1867	17634	18142	20901	20901		
VLQATVVAVGSGSK	14	Unmodified	_VLQATVVAVGSGSK_			0	0	0	P61604	P61604	P61604	HSPE1	10 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.382634	1314.75072	2.0842	0.0013722	2.1685	0.0014277	4.2527	0.0027999	658.384361385583	7.5536	0.2927	7.5536	7.5003	7.7931	0	429	232	1.03776581230406	0.155363585696682	1.03776581230406	420.020945304054	0	62.881200514079						2814	34	6	NaN	NaN	NaN	2.59E-11	1	12809	162.23	99.258	1	4274900			20902	1347	17635	18143	20902	20902		
VLQDLVMDILR	11	Unmodified	_VLQDLVMDILR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.87613	1313.73771	0.63261	0.00041618	-0.94865	-0.00062409	-0.31603	-0.00020791	657.875540085921	19.401	0.15962	19.401	19.357	19.516	0	522	37	0.975277694896658	0.0242408171075922	0.975277694896658	394.732947146992	0	9.81120477603559						430	19	5	NaN	NaN	NaN	0.00066919	1	12779	81.799	69.841	1	240910			20903	1240	17636	18144	20903	20903		
VLQDLVMDILR	11	Unmodified	_VLQDLVMDILR_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.87613	1313.73771	0.35862	0.00023593	0.89033	0.00058573	1.249	0.00082165	657.876963993361	19.41	0.053223	19.41	19.383	19.437	0	471	19	1.00957851518677	0.0120919545047411	1.00957851518677	408.615820009345	0	4.89408583002216						60	7	2	NaN	NaN	NaN	0.00066522	1	12781	81.099	62.762	1	12318			20904	1240	17636	18144	20904	20904		
VLQDLVMDILR	11	Oxidation (M)	_VLQDLVM(Oxidation (M))DILR_	VLQDLVM(1)DILR	VLQDLVM(77)DILR	0	1	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.873588	1329.73262	-0.11696	-7.7879E-05	-0.020873	-1.3899E-05	-0.13783	-9.1778E-05	665.873955509564	18.178	0.070953	18.178	18.142	18.213	0	498	31	0.991429299781895	0.0201783433575858	0.991429299781895	401.219889666917	0	8.16594052382032						202	9	4	NaN	NaN	NaN	0.0056771	1	13295	76.85	56.617	1	58527			20905	1240	17636	18145	20905	20905	439	
VLQDMGLPTGAEGR	14	Unmodified	_VLQDMGLPTGAEGR_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.366658	1442.71876	2.3358	0.0016873	-1.4154	-0.0010225	0.92035	0.00066483	722.365709202241	9.7445	0.30149	9.7445	9.6026	9.9041	0	471	58	1.00957851518677	0.0382885589296732	1.00957851518677	408.235405285908	0	15.4824465233165						589	35	3	NaN	NaN	NaN	0.0001805	1	16749	73.891	65.417	1	382300			20906	1606	17637	18146	20906	20906		
VLQEALCVISGVPGLK	16	Unmodified	_VLQEALCVISGVPGLK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.655169	1681.94368	-1.5012	-0.00084317	-1.2206	-0.00068555	-2.7218	-0.0015287	561.654611230064	16.777	0.097535	16.777	16.741	16.839	0	699	49	0.85560534332665	0.0325819812150898	0.85560534332665	518.257535940027	0	19.7355678436081						377	12	4	NaN	NaN	NaN	0.036528	1	23972	42.446	39.967	1	102480			20907	2420	17638	18147	20907	20907		
VLQEALCVISGVPGLK	16	Unmodified	_VLQEALCVISGVPGLK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.979115	1681.94368	0.73639	0.00062003	0.64953	0.00054689	1.3859	0.0011669	841.979680927225	16.785	0.13298	16.785	16.732	16.865	0	231	40	1.16991841121525	0.0259138095878944	1.16991841121525	472.431200534213	0	10.4643982491967						518	16	5	NaN	NaN	NaN	1.8892E-08	1	23973	91.993	80.511	1	228050			20908	2420	17638	18147	20908	20908		
VLQELDMSDFEEQFK	15	Unmodified	_VLQELDMSDFEEQFK_			0	0	0	O95466	O95466	O95466	FMNL1	Formin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.432392	1856.85023	0.94183	0.00087537	2.1111	0.0019621	3.0529	0.0028375	929.433661415728	16.386	0.097523	16.386	16.342	16.44	0	264	40	1.14797626962532	0.0259494554847892	1.14797626962532	463.213608352919	0	10.4707224599911						354	12	4	NaN	NaN	NaN	2.6242E-05	1	28620	73.502	65.926	1	94784			20909	437	17639	18148	20909	20909		
VLQEYTSDDMNVAPGDR	17	Unmodified	_VLQEYTSDDMNVAPGDR_			0	0	0	Q9Y6D5	Q9Y6D5	Q9Y6D5	ARFGEF2	Brefeldin A-inhibited guanine nucleotide-exchange protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.433455	1908.85236	2.2749	0.0021735	-2.0614	-0.0019696	0.21347	0.00020396	955.430988783207	8.7068	0.097623	8.7068	8.6623	8.7599	0	291	28	1.12999890578964	0.0179872594676864	1.12999890578964	455.867555018737	0	7.25647427887719						158	12	2	NaN	NaN	NaN	0.0038628	1	29810	45.654	34.895	1	48605			20910	3459	17640	18149	20910	20910		
VLQGDLVMNVYR	12	Unmodified	_VLQGDLVMNVYR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.876662	1405.73877	1.5506	0.0010914	-0.20429	-0.0001438	1.3463	0.00094761	703.876715931739	12.254	0.21284	12.254	12.174	12.387	0	465	106	1.01360860968299	0.0704148347299354	1.01360860968299	409.967403125316	0	28.480210862414						1153	25	4	NaN	NaN	NaN	0.00037691	1	15651	70.389	51.065	1	367160			20911	1127	17641	18150	20911	20911		
VLQLINDNTATALSYGVFR	19	Unmodified	_VLQLINDNTATALSYGVFR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.044261	2094.11095	0.35121	0.00024551	0.26785	0.00018724	0.61905	0.00043275	699.044620030309	17.867	0.088643	17.867	17.832	17.92	0	498	46	0.991429299781895	0.0302570607134584	0.991429299781895	599.562997164976	0	18.2978393020608						279	11	4	NaN	NaN	NaN	0.0069554	1	33243	26.682	26.602	1	62413			20912	3410	17642	18151	20912	20912		
VLQLINDNTATALSYGVFR	19	Unmodified	_VLQLINDNTATALSYGVFR_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1048.06275	2094.11095	1.4926	0.0015643	-0.53755	-0.00056339	0.95502	0.0010009	1048.56379564908	17.867	0.16847	17.867	17.823	17.991	0	129	58	1.23753038177212	0.0377080442186564	1.23753038177212	498.929359786735	0	15.202576549178						784	20	5	NaN	NaN	NaN	1.3818E-19	1	33244	173.26	168.96	1	310450			20913	3410	17642	18151	20913	20913		
VLQLTSWDEDAWASK	15	Unmodified	_VLQLTSWDEDAWASK_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.928134	1747.84172	2.2524	0.0019707	2.0581	0.0018006	4.3105	0.0037714	874.929502005589	15.109	0.21282	15.109	15.03	15.242	-1.7764E-15	303	67	1.12200181823275	0.0440082277490712	1.12200181823275	452.942110462792	0	17.7657283887365						851	25	5	NaN	NaN	NaN	1.0104E-12	1	25833	137.4	126.43	1	379040			20914	753	17643	18152	20914	20914		
VLQLYPNNK	9	Unmodified	_VLQLYPNNK_			0	0	0	Q02790	Q02790	Q02790	FKBP4	Peptidyl-prolyl cis-trans isomerase FKBP4;Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.808574	1087.60259	1.0762	0.00058631	-0.7802	-0.00042506	0.29597	0.00016125	544.80787902257	7.4294	0.22164	7.4294	7.3496	7.5713	0	633	64	0.900343422309015	0.0426423617596632	0.900343422309015	365.191568168559	0	17.2963233534654						673	26	3	NaN	NaN	NaN	0.0070071	1	6417	44.767	11.371	1	310350			20915	1530	17644	18153	20915	20915		
VLQPHPVTPSDTETR	15	Unmodified	_VLQPHPVTPSDTETR_			0	0	0	P57678	P57678	P57678	GEMIN4	Gem-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.624926	1675.85295	-0.050811	-2.8435E-05	1.8914	0.0010585	1.8406	0.00103	559.625992650991	4.7958	0.12412	4.7958	4.7337	4.8578	0	750	28	0.820941264895493	0.0183719873373771	0.820941264895493	497.275537537279	0	11.128615735969						222	15	3	NaN	NaN	NaN	1.4707E-06	1	23789	100.07	90.329	1	49500			20916	1294	17645	18154	20916	20916		
VLQQAFNYLNQGVVHSITWK	20	Unmodified	_VLQQAFNYLNQGVVHSITWK_			0	0	0	O15397	O15397	O15397	IPO8	Importin-8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	782.41821	2344.2328	0.70847	0.00055432	-6.2846	-0.0049172	-5.5761	-0.0043628	782.747747363898	17.433	0.097516	17.433	17.388	17.486	0	429	28	1.03776581230406	0.0181041477634616	1.03776581230406	627.143922784733	0	10.9407210301559						260	12	4	NaN	NaN	NaN	0.033633	1	35992	13.345	8.003	1	61786			20917	172	17646	18155	20917	20917		
VLQQFADNDVSR	12	Unmodified	_VLQQFADNDVSR_			0	0	0	P51659	P51659	P51659	HSD17B4	Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.349323	1390.68409	1.8298	0.0012742	2.6652	0.0018559	4.495	0.0031301	696.349922985808	6.9417	0.19514	6.9417	6.8885	7.0836	0	486	49	0.999498404980629	0.0322719687631251	0.999498404980629	404.302961790461	0	13.0542004756812						403	23	2	NaN	NaN	NaN	0.00050188	1	15172	85.821	71.826	1	245860			20918	1195	17647	18156	20918	20918		
VLQQTLNYINQGVSHALTWK	20	Unmodified	_VLQQTLNYINQGVSHALTWK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.749848	2312.22772	0.43637	0.00033677	0.22912	0.00017682	0.66549	0.00051359	772.084585050987	17.255	0.15075	17.255	17.202	17.353	0	456	34	1.01965166402748	0.0221548084259287	1.01965166402748	616.247362607074	0	13.3897121371986						497	18	5	NaN	NaN	NaN	3.6511E-11	1	35740	166.48	149.24	1	193150			20919	429	17648	18157	20919	20919		
VLQSFTVDSSK	11	Unmodified	_VLQSFTVDSSK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.819335	1209.62412	1.7658	0.0010698	2.2282	0.0013499	3.994	0.0024197	605.820919068139	7.2964	0.24828	7.2964	7.2343	7.4826	0	525	40	0.973257487423603	0.0262699700789047	0.973257487423603	394.267935584655	0	10.6420007086701						513	29	4	NaN	NaN	NaN	4.3108E-05	1	9720	114.39	90.273	1	240450			20920	326	17649	18158	20920	20920		
VLSDVDAFIAYVGTDQK	17	Unmodified	_VLSDVDAFIAYVGTDQK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.315758	1839.92544	-0.40834	-0.00025085	0.65676	0.00040346	0.24842	0.00015261	614.650484995047	17.238	0.097544	17.238	17.202	17.3	0	555	31	0.953040030838688	0.0202342542182106	0.953040030838688	576.870921944485	0	12.2477047217484						209	12	3	NaN	NaN	NaN	0.038271	1	28229	14.393	13.512	1	55828			20921	2947	17650	18159	20921	20921		
VLSDVDAFIAYVGTDQK	17	Unmodified	_VLSDVDAFIAYVGTDQK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.969999	1839.92544	0.33168	0.00030547	1.9937	0.0018361	2.3254	0.0021416	921.473207768513	17.229	0.10641	17.229	17.193	17.3	0	129	40	1.23753038177212	0.0257896256378105	1.23753038177212	499.383156127699	0	10.4069401737995						264	13	3	NaN	NaN	NaN	0.00014013	1	28230	63.766	57.738	1	47131			20922	2947	17650	18159	20922	20922		
VLSDVDAFIAYVGTDQK	17	Unmodified	_VLSDVDAFIAYVGTDQK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.969999	1839.92544	1.0793	0.00099399	3.4724	0.003198	4.5517	0.004192	921.474371358811	17.246	0.23943	17.246	17.149	17.388	0	234	46	1.16792504164217	0.0299128815634933	1.16792504164217	471.295166200621	0	12.0708059039334						592	28	4	NaN	NaN	NaN	1.2217E-10	1	28231	135.21	130.9	1	163340			20923	2947	17650	18159	20923	20923		
VLSDVDAFIAYVGTDQK	17	Unmodified	_VLSDVDAFIAYVGTDQK_			0	0	0	Q9HAV4	Q9HAV4	Q9HAV4	XPO5	Exportin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.315758	1839.92544	0.20079	0.00012335	5.0146	0.0030805	5.2153	0.0032039	614.653639694208	12.822	0.11528	12.822	12.76	12.875	0	696	25	0.857641857947968	0.0162909868365219	0.857641857947968	519.126812245919	0	9.86086206778509						212	14	4	NaN	NaN	NaN	0.051986	1	28234	6.5219	1.4279	1	52679			20924	2947	17650	18159	20924	20924		
VLSECSPLMNDIFNK	15	Unmodified	_VLSECSPLMNDIFNK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.926222	1765.83789	2.1725	0.0019203	-0.138	-0.00012198	2.0345	0.0017983	883.926028950112	15.251	0.28371	15.251	15.163	15.446	0	285	46	1.13399579921816	0.0299787708874888	1.13399579921816	457.747265961144	0	12.1011915741529						689	33	5	NaN	NaN	NaN	0.00019122	1	26291	79.795	71.421	1	248330			20925	1240	17651	18160	20925	20925		
VLSEDEEDVDFDIIHNANDTFTVK	24	Unmodified	_VLSEDEEDVDFDIIHNANDTFTVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	922.431126	2764.27155	1.5623	0.0014411	1.1791	0.0010876	2.7414	0.0025287	922.766714985064	15.349	0.079802	15.349	15.322	15.402	0	423	79	1.04178812298108	0.0522395956348372	1.04178812298108	629.01089723753	0	31.5412262788791						517	10	4	NaN	NaN	NaN	0.00011401	1	37802	38.616	38.569	1	97373			20926	326	17652	18161	20926	20926		
VLSEHGFGPITTDIR	15	Unmodified	_VLSEHGFGPITTDIR_			0	0	0	Q9UJ68	Q9UJ68	Q9UJ68	MSRA	Mitochondrial peptide methionine sulfoxide reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.958017	1640.85222	-1.1229	-0.0006153	-0.30503	-0.00016715	-1.4279	-0.00078245	547.957945343028	10.667	0.088655	10.667	10.622	10.711	0	756	28	0.816857749704129	0.0183770979161022	0.816857749704129	494.888448667836	0	11.1336563581735						191	11	3	NaN	NaN	NaN	0.012499	1	22778	47.57	38.593	1	48811			20927	3243	17653	18162	20927	20927		
VLSFDIECAGR	11	Unmodified	_VLSFDIECAGR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.810987	1265.60742	0.022175	1.4055E-05	1.0423	0.0006606	1.0644	0.00067465	633.811468292835	11.944	0.18623	11.944	11.846	12.032	0	573	37	0.940896116921038	0.0242979231728671	0.940896116921038	380.968058227987	0	9.83820896235744						389	22	4	NaN	NaN	NaN	0.00083637	1	11378	55.235	41.961	1	98154			20928	878	17654	18163	20928	20928		
VLSGDLGQLPTGIR	14	Unmodified	_VLSGDLGQLPTGIR_			0	0	0	Q16822	Q16822	Q16822	PCK2	Phosphoenolpyruvate carboxykinase [GTP], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.40664	1424.79873	1.3598	0.00097008	-0.65043	-0.00046402	0.70936	0.00050606	713.406409426958	12.502	0.070932	12.502	12.476	12.547	0	459	64	1.01763759082241	0.0422838777135148	1.01763759082241	411.543337293485	0	17.1000445589538						326	9	4	NaN	NaN	NaN	1.0103E-05	1	16239	61.194	52.721	1	97499			20929	1908	17655	18164	20929	20929		
VLSGEFQIVNPHLLK	15	Unmodified	_VLSGEFQIVNPHLLK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.32604	1692.95629	0.74136	0.00041911	-0.87779	-0.00049624	-0.13643	-7.713E-05	565.32556394844	13.504	0.11528	13.504	13.451	13.567	0	645	61	0.892219381832517	0.0406484069793801	0.892219381832517	540.406706044171	0	24.6202583904337						437	14	4	NaN	NaN	NaN	0.0090405	1	24297	77.358	68.984	1	165750			20930	828	17656	18165	20930	20930		
VLSGEFQIVNPHLLK	15	Unmodified	_VLSGEFQIVNPHLLK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.485422	1692.95629	2.0668	0.0017516	0.66331	0.00056214	2.7301	0.0023137	847.486002549253	13.504	0.13301	13.504	13.451	13.584	0	231	49	1.16991841121525	0.0319004977847992	1.16991841121525	472.406086401492	0	12.881231005778						541	16	4	NaN	NaN	NaN	4.3421E-06	1	24298	110.52	83.943	1	176660			20931	828	17656	18165	20931	20931		
VLSGLEILSK	10	Unmodified	_VLSGLEILSK_			0	0	0	O15357	O15357	O15357	INPPL1	Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.826432	1057.63831	0.85871	0.00045497	-2.264	-0.0011995	-1.4053	-0.00074457	529.825219054301	12.875	0.11529	12.875	12.83	12.946	0	663	34	0.880024865079826	0.0223643734856528	0.880024865079826	357.076567314041	0	9.07450917726243						190	14	3	NaN	NaN	NaN	0.035081	1	5670	37.591	2.8103	1	48006			20932	167	17657	18166	20932	20932		
VLSGTIHAGQPVK	13	Unmodified	_VLSGTIHAGQPVK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.877519	1305.74048	2.631	0.0017204	-0.99121	-0.00064813	1.6398	0.0010723	653.876782403437	4.4588	0.15073	4.4588	4.4322	4.5829	0	501	79	0.98941132619024	0.0524057501143701	0.98941132619024	400.478904404492	0	21.2120043855887						390	18	4	NaN	NaN	NaN	0.0017156	1	12532	54.27	47.579	1	102270			20933	1796	17658	18167	20933	20933		
VLSGTIHAGQPVK	13	Unmodified	_VLSGTIHAGQPVK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	436.254105	1305.74048	-0.49836	-0.00021741	2.4157	0.0010538	1.9173	0.00083643	436.255053321557	4.4765	0.12413	4.4765	4.4322	4.5563	0	738	55	0.829104889055312	0.0367363223908843	0.829104889055312	503.384665120206	0	22.3041759716961						308	15	3	NaN	NaN	NaN	0.067901	1	12533	22.898	18.695	1	76919			20934	1796	17658	18167	20934	20934		
VLSHQDDTALLK	12	Unmodified	_VLSHQDDTALLK_			0	0	0	Q93034	Q93034	Q93034	CUL5	Cullin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.364441	1338.71433	2.1658	0.0014518	-1.7534	-0.0011754	0.41232	0.00027641	670.3636376618	5.6736	0.097606	5.6736	5.6292	5.7268	0	483	25	1.00151498427745	0.0161292915341544	1.00151498427745	405.273486406806	0	6.52688608352128						136	12	3	NaN	NaN	NaN	0.0048894	1	13563	47.361	37.111	1	29780			20935	2453	17659	18168	20935	20935		
VLSIGDGIAR	10	Unmodified	_VLSIGDGIAR_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.792924	999.571294	0.48336	0.00024206	0.083632	4.1882E-05	0.56699	0.00028395	500.792857744409	8.9996	0.29264	8.9996	8.9198	9.2125	0	675	52	0.871889544407995	0.0345775238845497	0.871889544407995	354.039616737911	0	14.0405552312754						845	34	5	NaN	NaN	NaN	6.1985E-05	1	4283	98.009	67.447	1	862870			20936	840	17660	18169	20936	20936		
VLSLLALVK	9	Unmodified	_VLSLLALVK_			0	0	0	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.331153	954.647754	-1.6062	-0.0007683	-0.81744	-0.00039101	-2.4237	-0.0011593	478.330690587949	17.069	0.097536	17.069	17.034	17.131	0	696	28	0.857641857947968	0.0183286333597692	0.857641857947968	348.476606194494	0	7.4472810418531						148	12	2	NaN	NaN	NaN	0.0047318	1	3332	47.349	42.041	1	38496			20937	3274	17661	18170	20937	20937		
VLSLLALVKPEVWTLK	16	Unmodified	_VLSLLALVKPEVWTLK_			0	0	1	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.713124	1808.11754	-0.75115	-0.00045348	-0.80094	-0.00048354	-1.5521	-0.00093702	604.047175412991	19.614	0.088674	19.614	19.57	19.658	0	645	28	0.892219381832517	0.0182828962008553	0.892219381832517	540.127458717258	0	11.0680113703393						186	11	4	NaN	NaN	NaN	0.048831	1	27447	20.29	19.408	1	48075			20938	3274	17662	18171	20938	20938		
VLSLLALVKPEVWTLK	16	Unmodified	_VLSLLALVKPEVWTLK_			0	0	1	Q9UL46	Q9UL46	Q9UL46	PSME2	Proteasome activator complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.066048	1808.11754	0.33837	0.00030624	0.70392	0.00063709	1.0423	0.00094334	905.066642193733	19.614	0.070933	19.614	19.587	19.658	0	132	31	1.23554629282893	0.0198422518386323	1.23554629282893	498.648137753281	0	8.00803821402064						165	9	3	NaN	NaN	NaN	0.0022611	1	27449	83.214	81.626	1	34538			20939	3274	17662	18171	20939	20939		
VLSMAPGLTSVEIIPFR	17	Unmodified	_VLSMAPGLTSVEIIPFR_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	915.513322	1829.01209	1.2485	0.001143	-1.5594	-0.0014277	-0.31096	-0.00028468	916.013738913218	18.843	0.12414	18.843	18.798	18.922	0	267	85	1.14597988355104	0.0559180845020093	1.14597988355104	462.460254361431	0	22.565746531319						720	15	5	NaN	NaN	NaN	3.5268E-10	1	27951	112.95	107.56	1	216390			20940	422	17663	18172	20940	20940		
VLSMTGVGQTLVWCLHK	17	Unmodified	_VLSMTGVGQTLVWCLHK_			0	0	0	P30047	P30047	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	643.674346	1928.00121	1.1531	0.00074222	-1.9626	-0.0012633	-0.80947	-0.00052103	644.007708160271	15.535	0.16848	15.535	15.491	15.659	0	588	43	0.93076847747433	0.0283711492854036	0.93076847747433	563.197651564341	0	17.1670668231899						382	20	5	NaN	NaN	NaN	4.3749E-05	1	30248	112.73	102.71	1	148690			20941	897	17664	18173	20941	20941		
VLSMTGVGQTLVWCLHK	17	Unmodified	_VLSMTGVGQTLVWCLHK_			0	0	0	P30047	P30047	P30047	GCHFR	GTP cyclohydrolase 1 feedback regulatory protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	965.007881	1928.00121	0.7291	0.00070359	-1.2128	-0.0011704	-0.48372	-0.00046679	965.508369928444	15.535	0.062085	15.535	15.5	15.562	1.7764E-15	63	28	1.28111162701928	0.0178030665835265	1.28111162701928	516.792854976108	0	7.18165178817162						138	8	3	NaN	NaN	NaN	4.4481E-05	1	30249	71.219	67.147	1	23053			20942	897	17664	18173	20942	20942		
VLSPQDQDVQDNPR	14	Unmodified	_VLSPQDQDVQDNPR_			0	0	0	A6NJ78	A6NJ78	A6NJ78	METTL15	Probable methyltransferase-like protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.892083	1609.76961	2.6638	0.0021468	-2.1802	-0.001757	0.48363	0.00038975	805.890636630589	4.8844	0.079797	4.8844	4.8489	4.9287	0	423	25	1.04178812298108	0.0160848033247041	1.04178812298108	420.844310636576	0	6.49767243222152						85	10	2	NaN	NaN	NaN	0.040822	1	21885	21.361	17.379	1	14788			20943	18	17665	18174	20943	20943		
VLSQPMPPTAGEAEQAADQQER	22	Unmodified	_VLSQPMPPTAGEAEQAADQQER_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1177.05807	2352.10159	1.2106	0.0014249	-1.4558	-0.0017135	-0.24518	-0.00028859	1177.55824189715	8.9553	0.035484	8.9553	8.9287	8.9642	0	87	22	1.26527909472281	0.0138601067580197	1.26527909472281	509.747911766269	0	5.58387513571137						51	5	2	NaN	NaN	NaN	0.0031647	1	36057	38.616	36.992	1	10300			20944	3134	17666	18175	20944	20944		
VLSQQAASVVK	11	Unmodified	_VLSQQAASVVK_			0	0	0	P30566	P30566	P30566	ADSL	Adenylosuccinate lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.332413	1128.65027	1.488	0.00084123	0.8852	0.00050043	2.3732	0.0013417	565.332969597646	5.3544	0.097535	5.3544	5.3189	5.4164	0	582	34	0.934820374997243	0.0222838959578864	0.934820374997243	379.003325806235	0	9.03453851226124						229	12	3	NaN	NaN	NaN	5.2252E-05	1	7502	97.277	63.882	1	96820			20945	913	17667	18176	20945	20945		
VLSTNTDDNIGGAHFTETLAQYLASEFQR	29	Unmodified	_VLSTNTDDNIGGAHFTETLAQYLASEFQR_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1066.84945	3197.52654	1.1055	0.0011794	0.42156	0.00044974	1.527	0.0016291	1067.18490131248	19.694	0.035437	19.694	19.676	19.712	0	306	25	1.12000185836644	0.0160029839487266	1.12000185836644	675.775944328752	0	9.65572646977716						129	5	4	NaN	NaN	NaN	0.012381	1	38456	40.472	40.385	1	26629			20946	1585	17668	18177	20946	20946		
VLSVDWTDTGLLLSGGADNK	20	Unmodified	_VLSVDWTDTGLLLSGGADNK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.02858	2060.0426	0.78107	0.00080531	-1.2436	-0.0012822	-0.46254	-0.00047689	1031.52953700664	17.912	0.13298	17.912	17.876	18.009	0	144	43	1.22760721615852	0.0277867742236872	1.22760721615852	494.982602277984	0	11.2038847875065						358	16	4	NaN	NaN	NaN	7.6388E-08	1	32709	85.742	79.22	1	76459			20947	2823	17669	18178	20947	20947		
VLSVETPLSIQAHPNK	16	Unmodified	_VLSVETPLSIQAHPNK_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.983244	1731.95193	1.8903	0.0016389	-0.78837	-0.0006835	1.1019	0.00095535	867.483301465532	10.179	0.070928	10.179	10.152	10.223	0	225	28	1.17390432875292	0.0179329343895447	1.17390432875292	473.928913000402	0	7.23988820381402						133	9	3	NaN	NaN	NaN	4.3706E-05	1	25393	72.846	69.11	1	22889			20948	956	17670	18179	20948	20948		
VLSVPESTPFTAVLK	15	Unmodified	_VLSVPESTPFTAVLK_			0	0	0	P61960	P61960	P61960	UFM1	Ubiquitin-fold modifier 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.453256	1586.89196	1.6687	0.0013257	0.49279	0.0003915	2.1615	0.0017172	794.45354009122	15.721	0.19508	15.721	15.65	15.845	0	363	52	1.08195024817156	0.0340884182480441	1.08195024817156	437.122081111362	0	13.7721677605427						738	23	5	NaN	NaN	NaN	4.2984E-06	1	21186	80.623	73.483	1	494700			20949	1355	17671	18180	20949	20949		
VLTAEELNAAQTSVAYGCIK	20	Unmodified	_VLTAEELNAAQTSVAYGCIK_			0	0	0	P54136	P54136	P54136	RARS	Arginine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.54354	2137.07252	1.8683	0.0019982	-1.3652	-0.0014601	0.50306	0.00053805	1070.04477216187	12.733	0.2217	12.733	12.671	12.893	0	126	64	1.23951419873743	0.0416773159487747	1.23951419873743	499.662982384716	0	16.8006239912111						769	26	5	NaN	NaN	NaN	9.1277E-29	1	33836	184.59	177.6	1	184340			20950	1250	17672	18181	20950	20950		
VLTCTDLEQGPNFFLDFENAQPTESEK	27	Unmodified	_VLTCTDLEQGPNFFLDFENAQPTESEK_			0	0	0	Q9NUQ9	Q9NUQ9	Q9NUQ9	FAM49B	Protein FAM49B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1043.81676	3128.42846	1.3639	0.0014236	-0.25987	-0.00027126	1.104	0.0011524	1044.1505884432	18.763	0.062054	18.763	18.727	18.789	0	354	55	1.08796502040166	0.0360961081802142	1.08796502040166	656.508705685807	0	21.7814073222121						321	8	5	NaN	NaN	NaN	9.6266E-11	1	38392	128.39	120.52	1	56143			20951	3057	17673	18182	20951	20951		
VLTEDEMGHPEIGDAIAR	18	Unmodified	_VLTEDEMGHPEIGDAIAR_			0	0	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	651.650923	1951.93094	0.83332	0.00054304	-0.18927	-0.00012334	0.64405	0.0004197	651.985207258589	9.9041	0.15074	9.9041	9.8598	10.01	0	663	76	0.880024865079826	0.0507999489350157	0.880024865079826	532.446644918466	0	30.7357933233227						830	18	6	NaN	NaN	NaN	6.0753E-07	1	30747	79.235	62.476	1	525990			20952	695	17674	18183	20952	20952		
VLTEDEMGHPEIGDAIAR	18	Unmodified	_VLTEDEMGHPEIGDAIAR_			0	0	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.972747	1951.93094	2.2405	0.0021889	-1.2165	-0.0011885	1.024	0.0010004	977.473153013802	9.9041	0.061998	9.9041	9.8776	9.9396	0	183	61	1.20177511391933	0.0397990191528599	1.20177511391933	484.746501594224	0	16.0532824134726						333	8	4	NaN	NaN	NaN	0.0031605	1	30748	55.782	45.761	1	79521			20953	695	17674	18183	20953	20953		
VLTEDEMGHPEIGDAIAR	18	Oxidation (M)	_VLTEDEM(Oxidation (M))GHPEIGDAIAR_	VLTEDEM(1)GHPEIGDAIAR	VLTEDEM(57)GHPEIGDAIAR	0	1	0	P14324	P14324	P14324	FDPS	Farnesyl pyrophosphate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.982562	1967.92586	0.7494	0.00049234	1.1584	0.00076107	1.9078	0.0012534	657.317619578246	8.0858	0.088777	8.0858	8.0502	8.139	0	618	43	0.910492137470517	0.0284104988036308	0.910492137470517	550.84885467062	0	17.1883864588648						279	11	4	NaN	NaN	NaN	0.00012168	1	31069	57.042	51.015	1	69310			20954	695	17674	18184	20954	20954	220	
VLTEIIASR	9	Unmodified	_VLTEIIASR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.303124	1000.5917	0.032593	1.6339E-05	-1.3112	-0.00065733	-1.2786	-0.00064099	501.302566859665	8.9553	0.19524	8.9553	8.8576	9.0528	0	705	43	0.851531465363931	0.0285250764845424	0.851531465363931	345.76823082531	0	11.5827372579844						433	23	4	NaN	NaN	NaN	7.3943E-05	1	4305	121.67	72.346	1	347280			20955	591	17675	18185	20955	20955		
VLTELLEQER	10	Unmodified	_VLTELLEQER_			0	0	0	Q13428	Q13428	Q13428	TCOF1	Treacle protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.340435	1228.66632	1.3507	0.00083112	0.2307	0.00014196	1.5814	0.00097308	615.340578952179	11.11	0.16849	11.11	11.057	11.225	0	552	43	0.955063035883597	0.0283201170105575	0.955063035883597	386.829701311546	0	11.4705124088136						503	20	4	NaN	NaN	NaN	1.7275E-07	1	10275	138.26	94.525	1	170200			20956	1666	17676	18186	20956	20956		
VLTFALSEEVRPQDTVSVIGGVAGGSK	27	Unmodified	_VLTFALSEEVRPQDTVSVIGGVAGGSK_			0	0	1	P55786	P55786	P55786	NPEPPS	Puromycin-sensitive aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	906.15538	2715.44431	1.0658	0.00096581	0.81584	0.00073928	1.8817	0.0017051	906.489464772574	15.934	0.15962	15.934	15.863	16.023	0	201	85	1.18983705239708	0.0558028968847089	1.18983705239708	718.464543631551	0	33.6957088055206						928	19	5	NaN	NaN	NaN	8.5634E-21	1	37653	145.31	137.56	1	197720			20957	1277	17677	18187	20957	20957		
VLTFLDSHCECNEHWLEPLLER	22	Unmodified	_VLTFLDSHCECNEHWLEPLLER_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	700.082269	2796.29997	0.23789	0.00016654	-1.8062	-0.0012645	-1.5683	-0.001098	700.332003956145	16.475	0.14184	16.475	16.431	16.573	0	591	58	0.928742107665821	0.038485045404303	0.928742107665821	747.630435574683	0	30.9801730978299						688	17	7	NaN	NaN	NaN	2.6225E-05	1	37888	45.587	42.519	1	292590			20958	1586	17678	18188	20958	20958		
VLTFLDSHCECNEHWLEPLLER	22	Unmodified	_VLTFLDSHCECNEHWLEPLLER_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	933.107267	2796.29997	1.1617	0.001084	0.15246	0.00014227	1.3141	0.0012262	933.442035670558	16.475	0.07981	16.475	16.44	16.519	0	366	73	1.07994477139643	0.0481613423106055	1.07994477139643	652.011740474905	0	29.0771912187151						714	10	5	NaN	NaN	NaN	1.4842E-11	1	37889	78.673	69.517	1	204640			20959	1586	17678	18188	20959	20959		
VLTGVAGEDAECHAAK	16	Unmodified	_VLTGVAGEDAECHAAK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.390861	1626.76717	3.6428	0.0029666	-3.2155	-0.0026187	0.42727	0.00034797	814.388394239623	4.3347	0.15074	4.3347	4.3081	4.4588	0	276	40	1.13998907770044	0.0259708783379724	1.13998907770044	460.472858033701	0	10.4903501339284						441	18	5	NaN	NaN	NaN	9.416E-09	1	22374	115.05	108.67	1	147540			20960	429	17679	18189	20960	20960		
VLTGVAGEDAECHAAK	16	Unmodified	_VLTGVAGEDAECHAAK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.263	1626.76717	1.0013	0.00054399	0.13009	7.0671E-05	1.1314	0.00061466	543.263276001772	4.3347	0.18622	4.3347	4.2815	4.4677	0	717	43	0.84338031290707	0.0285409346814225	0.84338031290707	510.993978664414	0	17.2926087370838						534	22	5	NaN	NaN	NaN	0.00014469	1	22375	69.641	64.49	1	202180			20961	429	17679	18189	20961	20961		
VLTIDPTEFK	10	Unmodified	_VLTIDPTEFK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.821347	1161.62814	0.37378	0.00021748	1.6815	0.00097835	2.0553	0.0011958	581.822360568586	12.405	0.11524	12.405	12.352	12.467	0	561	31	0.948993180460448	0.0202342542182106	0.948993180460448	384.617554960085	0	8.2007432130049						200	14	3	NaN	NaN	NaN	0.0037639	1	8392	65.404	47.934	1	62568			20962	1241	17680	18190	20962	20962		
VLTLSERPLDFLDLERPPTTPQNEEIR	27	Unmodified	_VLTLSERPLDFLDLERPPTTPQNEEIR_			0	0	2	Q9GZY8	Q9GZY8	Q9GZY8	MFF	Mitochondrial fission factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	795.424024	3177.66699	0.29581	0.00023529	0.029502	2.3467E-05	0.32531	0.00025876	795.674672668578	16.342	0.133	16.342	16.271	16.404	0	507	88	0.985374541851584	0.0585455737993943	0.985374541851584	792.748124825447	0	47.1007641004086						838	16	5	NaN	NaN	NaN	0.014787	1	38437	18.984	18.634	1	190580			20963	2835	17681	18191	20963	20963		
VLTMPETCR	9	Unmodified	_VLTMPETCR_			0	0	0	Q99460	Q99460	Q99460	PSMD1	26S proteasome non-ATPase regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.770277	1105.526	0.9582	0.00053062	-0.34405	-0.00019052	0.61416	0.0003401	553.771172299667	6.4274	0.37247	6.4274	6.2234	6.5959	0	639	49	0.896281965493857	0.0324826533406289	0.896281965493857	363.470444475201	0	13.1727345879896						599	43	4	NaN	NaN	NaN	0.010996	1	6856	58.426	29.324	1	210400			20964	2641	17682	18192	20964	20964		
VLTPEEQLADK	11	Unmodified	_VLTPEEQLADK_			0	0	0	O75822	O75822	O75822	EIF3J	Eukaryotic translation initiation factor 3 subunit J	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.832443	1241.65033	1.8964	0.0011792	1.0827	0.00067327	2.9791	0.0018525	621.833828364864	6.9771	0.24831	6.9771	6.8974	7.1457	0	570	88	0.942920803299286	0.058683451496955	0.942920803299286	381.86735061909	0	23.7658285509406						880	29	5	NaN	NaN	NaN	0.0020497	1	10673	64.064	45.728	1	644500			20965	363	17683	18193	20965	20965		
VLTPELYAELR	11	Unmodified	_VLTPELYAELR_			0	0	0	P12277	P12277	P12277	CKB	Creatine kinase B-type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.366453	1302.71835	1.0995	0.0007173	-0.092013	-6.0026E-05	1.0075	0.00065728	652.366290482683	13.105	0.23943	13.105	13.017	13.256	0	510	64	0.983355730988811	0.0423716092284074	0.983355730988811	398.037475995736	0	17.1509534745823						1050	28	4	NaN	NaN	NaN	3.9651E-05	1	12439	112.8	92.619	1	425290			20966	668	17684	18194	20966	20966		
VLTPTQVK	8	Unmodified	_VLTPTQVK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.273835	884.533118	-0.73341	-0.0003251	-0.11828	-5.2432E-05	-0.8517	-0.00037753	443.273809749718	4.3435	0.14181	4.3435	4.2904	4.4322	0	777	37	0.802556497112065	0.0245283773242136	0.802556497112065	326.46099423001	0	9.97756354465537						350	17	3	NaN	NaN	NaN	0.032203	1	2071	60.709	25.075	1	124480			20967	903	17685	18195	20967	20967		
VLTSDIEK	8	Unmodified	_VLTSDIEK_			0	0	0	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.752933	903.491313	0.75117	0.00034009	0.82581	0.00037389	1.577	0.00071398	452.753481025166	4.5297	0.14185	4.5297	4.4943	4.6361	0	717	31	0.84338031290707	0.0203835468475623	0.84338031290707	342.957130203768	0	8.28888536195211						230	17	3	NaN	NaN	NaN	0.026266	1	2392	31.952	12.465	1	76325			20968	1106	17686	18196	20968	20968		
VLTSGCDSSALEGLPLIK	18	Unmodified	_VLTSGCDSSALEGLPLIK_			0	0	0	Q9NTM9	Q9NTM9	Q9NTM9	CUTC	Copper homeostasis protein cutC homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.492784	1858.97101	1.5065	0.0014017	-1.4323	-0.0013328	0.074125	6.8973E-05	930.490879540299	15.109	0.12415	15.109	15.056	15.18	0	240	37	1.16393748060522	0.0239187954987381	1.16393748060522	469.650068340996	0	9.65126059414763						368	15	4	NaN	NaN	NaN	5.7402E-05	1	28679	111.38	94.62	1	119280			20969	3045	17687	18197	20969	20969		
VLTSGIFETK	10	Unmodified	_VLTSGIFETK_			0	0	0	P63092;Q5JWF2	P63092	P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.808239	1093.60193	0.23316	0.00012772	-0.91226	-0.00049974	-0.6791	-0.00037202	547.80775610014	9.8952	0.1064	9.8952	9.842	9.9484	0	672	37	0.873923798053065	0.0244093537126775	0.873923798053065	354.451082225357	0	9.90008723776015						237	13	3	NaN	NaN	NaN	0.013739	1	6553	50.834	21.525	1	73647			20970	1424	17688	18198	20970	20970		
VLTTGYWPTQSATPK	15	Unmodified	_VLTTGYWPTQSATPK_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.430313	1648.84607	2.5228	0.0020824	-2.8862	-0.0023824	-0.36345	-0.0003	825.428339716887	10.56	0.10641	10.56	10.507	10.613	0	351	37	1.08996939197032	0.0240541201161169	1.08996939197032	440.218751123308	0	9.71502025184878						212	13	3	NaN	NaN	NaN	0.0044332	1	23000	48.822	38.572	1	44423			20971	1695	17689	18199	20971	20971		
VLTVINQTQK	10	Unmodified	_VLTVINQTQK_			0	0	0	P42766	P42766	P42766	RPL35	60S ribosomal protein L35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.340238	1142.66592	1.6666	0.00095388	0.71664	0.00041016	2.3833	0.001364	572.340633433529	5.9041	0.37248	5.9041	5.8509	6.2234	0	603	61	0.920633820089869	0.0405358392902467	0.920633820089869	373.196434832873	0	16.4319736859131						973	43	5	NaN	NaN	NaN	5.3991E-10	1	7869	146.03	92.152	1	972660			20972	1057	17690	18200	20972	20972		
VLVAGDTMDSVK	12	Unmodified	_VLVAGDTMDSVK_			0	0	0	O94973	O94973	O94973	AP2A2	AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.821021	1233.62749	2.7201	0.0016806	1.0193	0.00062975	3.7395	0.0023103	617.821574084253	7.7132	0.11536	7.7132	7.6688	7.7842	-8.8818E-16	483	25	1.00151498427745	0.0161315207878521	1.00151498427745	405.62603137912	0	6.53346665802206						163	14	3	NaN	NaN	NaN	0.0030574	1	10433	50.297	23.35	1	35211			20973	399	17691	18201	20973	20973		
VLVALYEEPEK	11	Unmodified	_VLVALYEEPEK_			0	0	0	Q99417	Q99417	Q99417	MYCBP	C-Myc-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.353011	1288.69147	1.685	0.0010874	-0.15412	-9.9461E-05	1.5309	0.00098798	645.353245012031	10.374	0.097528	10.374	10.33	10.427	0	474	43	1.00756305028564	0.0282262646321653	1.00756305028564	407.882563792312	0	11.4265813749164						265	12	3	NaN	NaN	NaN	0.00054165	1	12028	99.855	82.385	1	57384			20974	2636	17692	18202	20974	20974		
VLVAQHDVYK	10	Unmodified	_VLVAQHDVYK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	391.220513	1170.63971	-0.84515	-0.00033064	-0.11107	-4.3453E-05	-0.95622	-0.00037409	391.220405145729	4.3081	0.1596	4.3081	4.2726	4.4322	0	843	25	0.757518876820989	0.016402423941871	0.757518876820989	460.476168816012	0	9.97061006287453						209	19	3	NaN	NaN	NaN	0.041752	1	8633	37.591	34.993	1	61606			20975	685	17693	18203	20975	20975		
VLVAQHDVYK	10	Unmodified	_VLVAQHDVYK_			0	0	0	P13804	P13804	P13804	ETFA	Electron transfer flavoprotein subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.327131	1170.63971	2.4173	0.0014173	-1.4397	-0.00084413	0.97757	0.00057317	586.326354230544	4.3081	0.16846	4.3081	4.2726	4.4411	0	576	37	0.938871150116794	0.0243046547974741	0.938871150116794	380.4808378674	0	9.84954689498181						354	20	4	NaN	NaN	NaN	0.017019	1	8635	49.16	40.183	1	128650			20976	685	17693	18203	20976	20976		
VLVCGAGPIGMVTLLVAK	18	Unmodified	_VLVCGAGPIGMVTLLVAK_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.520093	1797.02563	1.5073	0.0013559	-0.86616	-0.00077912	0.64117	0.00057675	900.021146505471	19.729	0.16849	19.729	19.614	19.782	0	261	46	1.14997238118939	0.0299499175476563	1.14997238118939	464.133587113466	0	12.0879100163859						424	20	3	NaN	NaN	NaN	0.0028324	1	27145	57.042	51.427	1	90686			20977	1508	17694	18204	20977	20977		
VLVDDGWILAYCHVR	15	Unmodified	_VLVDDGWILAYCHVR_			0	0	0	Q4J6C6	Q4J6C6	Q4J6C6	PREPL	Prolyl endopeptidase-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	605.978535	1814.91377	0.14496	8.7842E-05	1.1363	0.00068857	1.2812	0.00077641	606.313628335126	15.127	0.08869	15.127	15.101	15.189	1.7764E-15	600	25	0.922661313351899	0.0162188234604482	0.922661313351899	558.540336857563	0	9.81819329361781						189	11	5	NaN	NaN	NaN	0.003125	1	27605	56.202	55.395	1	42980			20978	1942	17695	18205	20978	20978		
VLVDGEEHVGFLK	13	Unmodified	_VLVDGEEHVGFLK_			0	0	0	Q9NPA0	Q9NPA0	Q9NPA0	EMC7	ER membrane protein complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.261036	1440.76128	0.026596	1.2799E-05	0.68835	0.00033128	0.71495	0.00034408	481.261476877745	10.046	0.11526	10.046	10.01	10.126	0	696	25	0.857641857947968	0.0162932496974951	0.857641857947968	520.200188521121	0	9.88262348171543						205	14	3	NaN	NaN	NaN	0.0085893	1	16702	22.898	19.005	1	55652			20979	2983	17696	18206	20979	20979		
VLVDHFGYTK	10	Unmodified	_VLVDHFGYTK_			0	0	0	P04114;CON__ENSEMBL:ENSBTAP00000032840	P04114;CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.813856	1177.61316	1.5487	0.00091342	1.3319	0.00078554	2.8805	0.001699	589.815192275466	6.9594	0.14185	6.9594	6.9151	7.0569	0	558	43	0.951016745717027	0.028335804573887	0.951016745717027	385.376291370303	0	11.482392217442						319	17	4	NaN	NaN	NaN	0.032818	1	8827	40.386	30.872	1	97608		+	20980	22;507	17697	18207	20980	20980		
VLVDQTTGLSR	11	Unmodified	_VLVDQTTGLSR_			0	0	0	Q15717	Q15717	Q15717	ELAVL1	ELAV-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	594.832777	1187.651	1.4464	0.00086039	-0.81324	-0.00048374	0.63319	0.00037664	594.83252212611	6.7644	0.21278	6.7644	6.7289	6.9417	0	609	37	0.916577990479294	0.0243383549190614	0.916577990479294	371.384487069247	0	9.86155848341764						483	25	4	NaN	NaN	NaN	4.5187E-05	1	9102	99.855	59.353	1	390160			20981	1864	17698	18208	20981	20981		
VLVDSLVEDDRTLQSLLTPQPPLLK	25	Unmodified	_VLVDSLVEDDRTLQSLLTPQPPLLK_			0	0	1	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	930.526813	2788.55861	1.1005	0.001024	-0.84412	-0.00078548	0.25633	0.00023852	930.858920059183	19.827	0.044336	19.827	19.809	19.853	0	405	16	1.05384839605172	0.0100467613119357	1.05384839605172	636.264916653414	0	6.06576977554334						82	6	4	NaN	NaN	NaN	0.069903	1	37864	6.304	6.2816	1	12069			20982	2422	17699	18209	20982	20982		
VLVDSSFGQPTTQGEAR	17	Unmodified	_VLVDSSFGQPTTQGEAR_			0	0	0	Q10570	Q10570	Q10570	CPSF1	Cleavage and polyadenylation specificity factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.447222	1790.87989	2.5108	0.0022508	-3.1103	-0.0027882	-0.59949	-0.00053741	896.946072850808	8.6891	0.15095	8.6891	8.6268	8.7778	0	318	64	1.11199926528787	0.0420280980154362	1.11199926528787	448.819282899207	0	16.9631594208136						434	18	4	NaN	NaN	NaN	1.1056E-05	1	26995	75.012	73.538	1	86209			20983	1588	17700	18210	20983	20983		
VLVEPDAGAGVAVMK	15	Unmodified	_VLVEPDAGAGVAVMK_			0	0	0	P42126	P42126	P42126	ECI1	Enoyl-CoA delta isomerase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.397427	1454.7803	1.7309	0.0012607	1.2137	0.00088409	2.9446	0.0021448	728.399079139051	10.631	0.26598	10.631	10.569	10.835	0	441	46	1.02971785871157	0.0301860841315895	1.02971785871157	416.346196255365	0	12.2051503736735						648	31	4	NaN	NaN	NaN	5.0583E-07	1	17104	84.309	72.352	1	255750			20984	1041	17701	18211	20984	20984		
VLVHPPQDGEDEPTLVQK	18	Unmodified	_VLVHPPQDGEDEPTLVQK_			0	0	0	Q16740	Q16740	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.01801	2000.02147	2.0039	0.002006	-3.233	-0.0032363	-1.2291	-0.0012303	1001.51666280189	8.1833	0.097543	8.1833	8.1124	8.21	0	192	28	1.1958073123591	0.0179083224969792	1.1958073123591	482.257455609282	0	7.22225224111202						102	12	2	NaN	NaN	NaN	0.045488	1	31640	24.922	21.417	1	21770			20985	1904	17702	18212	20985	20985		
VLVHPPQDGEDEPTLVQK	18	Unmodified	_VLVHPPQDGEDEPTLVQK_			0	0	0	Q16740	Q16740	Q16740	CLPP	ATP-dependent Clp protease proteolytic subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	667.6811	2000.02147	0.91402	0.00061028	1.1906	0.00079496	2.1047	0.0014052	668.016202870115	8.1656	0.20404	8.1656	8.0237	8.2277	0	621	79	0.908462957275599	0.0527843383249464	0.908462957275599	549.559485401231	0	31.9310034325395						624	24	3	NaN	NaN	NaN	4.4282E-07	1	31641	150.85	141.69	1	131360			20986	1904	17702	18212	20986	20986		
VLVIGAGGLGCELLK	15	Unmodified	_VLVIGAGGLGCELLK_			0	0	0	Q8TBC4	Q8TBC4	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.936719	1497.85889	0.49751	0.0003731	0.997	0.00074769	1.4945	0.0011208	749.937623206241	15.863	0.079796	15.863	15.828	15.908	0	390	34	1.06389100039157	0.0220845924039434	1.06389100039157	430.046872007498	0	8.92705162406759						213	10	3	NaN	NaN	NaN	0.00048437	1	18480	70.195	65.044	1	62323			20987	2336	17703	18213	20987	20987		
VLVIGAGGLGCELLK	15	Unmodified	_VLVIGAGGLGCELLK_			0	0	0	Q8TBC4	Q8TBC4	Q8TBC4	UBA3	NEDD8-activating enzyme E1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.936719	1497.85889	0.71493	0.00053615	1.9096	0.0014321	2.6245	0.0019682	749.938100533225	15.854	0.070933	15.854	15.828	15.899	0	255	49	1.15396378101328	0.0319443832387405	1.15396378101328	466.456159606883	0	12.9125840617539						221	9	3	NaN	NaN	NaN	0.046248	1	18481	28.228	20.227	1	47624			20988	2336	17703	18213	20988	20988		
VLVMANDPNYLHR	13	Unmodified	_VLVMANDPNYLHR_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	514.601287	1540.78203	-1.0128	-0.00052121	-0.96404	-0.00049609	-1.9769	-0.0010173	514.600769523119	8.4584	0.10643	8.4584	8.414	8.5205	0	768	40	0.808687310729125	0.0265668641501883	0.808687310729125	490.204429196848	0	16.1041162678209						293	13	4	NaN	NaN	NaN	0.00022854	1	19746	76.85	71.354	1	72347			20989	906	17704	18214	20989	20989		
VLVMANDPNYLHR	13	Unmodified	_VLVMANDPNYLHR_			0	0	0	P30154	P30154	P30154	PPP2R1B	Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.398293	1540.78203	2.3839	0.0018389	-1.2856	-0.00099171	1.0983	0.00084722	771.397148608112	8.4495	0.088646	8.4495	8.414	8.5027	0	327	25	1.10599442759226	0.0160162094863308	1.10599442759226	446.951922978596	0	6.47243372132311						132	11	3	NaN	NaN	NaN	0.00052416	1	19747	94.66	88.961	1	27547			20990	906	17704	18214	20990	20990		
VLVQNAAGSQEK	12	Unmodified	_VLVQNAAGSQEK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.335684	1242.65681	2.218	0.0013803	-0.94778	-0.00058984	1.2702	0.00079051	622.335442243686	3.2794	0.12413	3.2794	3.2439	3.3681	0	588	31	0.93076847747433	0.0202651042983174	0.93076847747433	376.942510507221	0	8.20695959818767						207	15	3	NaN	NaN	NaN	0.0073497	1	10708	50.297	20.987	1	41992			20991	3406	17705	18215	20991	20991		
VLVSGLPPSGSWQDLK	16	Unmodified	_VLVSGLPPSGSWQDLK_			0	0	0	Q13242	Q13242	Q13242	SRSF9	Serine/arginine-rich splicing factor 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.959237	1681.90392	2.2047	0.0018563	0.92685	0.00078037	3.1316	0.0026366	842.461165222593	14.045	0.62954	14.045	13.717	14.347	0	327	46	1.10599442759226	0.0300159293461491	1.10599442759226	446.617789707378	0	12.1209001475476						586	72	3	NaN	NaN	NaN	0.0024609	1	23969	54.199	46.198	1	213390			20992	1644	17706	18216	20992	20992		
VLVTVEEDDTIMEELVDNHGK	21	Unmodified	_VLVTVEEDDTIMEELVDNHGK_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	795.721184	2384.14172	0.54235	0.00043156	0.7186	0.00057181	1.261	0.0010034	796.05586983063	16.28	0.21279	16.28	16.2	16.413	0	447	31	1.02569221487577	0.020133781351245	1.02569221487577	619.786455148935	0	12.166071645521						345	25	3	NaN	NaN	NaN	2.3105E-08	1	36268	87.251	81.349	1	137770			20993	3013	17707	18217	20993	20993		
VLVTVIQGAVEYPDPIAQK	19	Unmodified	_VLVTVIQGAVEYPDPIAQK_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.57242	2039.13029	0.88317	0.00090133	-0.094231	-9.617E-05	0.78893	0.00080517	1021.07391873947	15.642	0.12413	15.642	15.588	15.712	0	144	52	1.22760721615852	0.0337572851848642	1.22760721615852	495.016582744985	0	13.6121845285745						445	15	4	NaN	NaN	NaN	1.5529E-10	1	32334	91.993	91.05	1	90665			20994	209	17708	18218	20994	20994		
VLVVGAGGIGCELLK	15	Unmodified	_VLVVGAGGIGCELLK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.928894	1483.84324	0.67238	0.00049953	0.55477	0.00041215	1.2272	0.00091169	742.929312751344	14.746	0.13302	14.746	14.701	14.834	0	402	52	1.05585747106793	0.0341495757377568	1.05585747106793	426.836459114005	0	13.8051625219895						413	16	4	NaN	NaN	NaN	0.00020535	1	18038	71.896	51.713	1	132500			20995	3188	17709	18219	20995	20995		
VLVVHDGFEGLAK	13	Unmodified	_VLVVHDGFEGLAK_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	461.925877	1382.7558	-1.4125	-0.00065246	-0.49667	-0.00022942	-1.9091	-0.00088188	461.925558438915	9.6647	0.12413	9.6647	9.6204	9.7445	0	774	40	0.804600385996946	0.0265705609050354	0.804600385996946	488.222409399077	0	16.1227156858343						305	15	4	NaN	NaN	NaN	0.029189	1	14920	24.689	21.587	1	108590			20996	578	17710	18220	20996	20996		
VLVYELLLGK	10	Unmodified	_VLVYELLLGK_			0	0	0	Q96P11	Q96P11	Q96P11	NSUN5	Probable 28S rRNA (cytosine-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.860275	1145.706	0.30367	0.00017426	-0.67296	-0.00038619	-0.3693	-0.00021192	573.859902915765	17.699	0.11525	17.699	17.654	17.77	0	588	34	0.93076847747433	0.0222869832094168	0.93076847747433	377.292780194573	0	9.03416699290023						250	14	3	NaN	NaN	NaN	0.00087573	1	7956	72.038	66.29	1	85752			20997	2591	17711	18221	20997	20997		
VLVYNNTSIVQDEILAHR	18	Unmodified	_VLVYNNTSIVQDEILAHR_			0	0	0	O15160	O15160	O15160	POLR1C	DNA-directed RNA polymerases I and III subunit RPAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.376011	2083.1062	0.54675	0.00038019	-0.31067	-0.00021603	0.23608	0.00016416	695.710354032231	13.167	0.09754	13.167	13.123	13.221	0	561	37	0.948993180460448	0.0242811063417099	0.948993180460448	573.919875235113	0	14.6844148189169						340	12	5	NaN	NaN	NaN	3.8719E-07	1	33073	87.727	76.048	1	113770			20998	151	17712	18222	20998	20998		
VLWLADCDVSDSSCSSLAATLLANHSLR	28	Unmodified	_VLWLADCDVSDSSCSSLAATLLANHSLR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1021.1621	3060.46447	0.53861	0.00055001	1.0788	0.0011016	1.6174	0.0016516	1021.49722966443	18.302	0.079801	18.302	18.275	18.355	0	114	58	1.24744674793813	0.0376873717567214	1.24744674793813	752.818493574633	0	22.7438569859411						317	10	5	NaN	NaN	NaN	4.3093E-10	1	38305	59.689	59.281	1	69665			20999	678	17713	18223	20999	20999		
VLYAYGYYTGEPSK	14	Unmodified	_VLYAYGYYTGEPSK_			0	0	0	O14880	O14880	O14880	MGST3	Microsomal glutathione S-transferase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.890489	1609.76642	2.6066	0.0021007	-1.1938	-0.0009621	1.4128	0.0011386	806.391013446084	9.9396	0.41672	9.9396	9.7889	10.206	0	381	142	1.06991323971056	0.0942057105625167	1.06991323971056	432.205833113077	0	38.055662932722						2115	48	4	NaN	NaN	NaN	4.7587E-05	1	21884	117.45	106.66	1	610650			21000	123	17714	18224	21000	21000		
VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR	33	Unmodified	_VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR_			0	0	0	P22087	P22087	P22087	FBL	rRNA 2-O-methyltransferase fibrillarin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	854.942581	3415.74122	0.92536	0.00079113	1.0516	0.00089903	1.9769	0.0016902	855.444662534111	17.956	0.12412	17.956	17.912	18.036	0	417	25	1.04580932352505	0.0160825837476568	1.04580932352505	841.113135238601	0	12.9347407165328						365	15	6	NaN	NaN	NaN	2.0094E-10	1	38616	53.013	52.811	1	88473			21001	800	17715	18225	21001	21001		
VLYLLELYCEDK	12	Unmodified	_VLYLLELYCEDK_			0	0	0	O75691	O75691	O75691	UTP20	Small subunit processome component 20 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	779.397092	1556.77963	0.89274	0.0006958	3.1041	0.0024194	3.9969	0.0031152	779.399387417545	17.681	0.079814	17.681	17.637	17.716	0	381	22	1.06991323971056	0.0140480177852844	1.06991323971056	432.331290608615	0	5.67653285723225						151	10	3	NaN	NaN	NaN	0.0033463	1	20264	43.168	32.918	1	30601			21002	351	17716	18226	21002	21002		
VLYNLFTK	8	Unmodified	_VLYNLFTK_			0	0	0	Q9NVD7;Q9HBI1	Q9NVD7	Q9NVD7	PARVA;PARVB	Alpha-parvin;Beta-parvin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.289485	996.564418	-0.55556	-0.00027738	0.06614	3.3023E-05	-0.48942	-0.00024436	499.288755577811	12.29	0.1153	12.29	12.236	12.352	0	693	31	0.85967808974117	0.0203609064422459	0.85967808974117	349.095330870246	0	8.26809180796266						272	14	4	NaN	NaN	NaN	0.015784	1	4220	45.489	32.662	1	68198			21003	3063	17717	18227	21003	21003		
VLYSNMLGEENTYLWR	16	Unmodified	_VLYSNMLGEENTYLWR_			0	0	0	Q00325	Q00325	Q00325	SLC25A3	Phosphate carrier protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.48275	1986.95095	1.9927	0.0019817	0.39629	0.0003941	2.389	0.0023758	994.984826020985	16.085	0.23059	16.085	16.023	16.253	0	207	88	1.18585551256002	0.0577363488252345	1.18585551256002	478.265663341967	0	23.2855629352622						1332	27	6	NaN	NaN	NaN	1.4993E-17	1	31382	185.9	168.17	1	655660			21004	1497	17718	18228	21004	21004		
VMAAAQAAHADDFIQEMEHGIYTDVGEK	28	Unmodified	_VMAAAQAAHADDFIQEMEHGIYTDVGEK_			0	0	0	Q03519	Q03519	Q03519	TAP2	Antigen peptide transporter 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	762.602294	3046.38007	0.27783	0.00021187	0.10719	8.1741E-05	0.38502	0.00029362	763.104052508911	16.599	0.088625	16.599	16.555	16.644	0	507	22	0.985374541851584	0.0141316768501546	0.985374541851584	792.89700164404	0	11.3712742990448						178	11	5	NaN	NaN	NaN	0.017217	1	38285	15.071	13.974	1	33428			21005	1539	17719	18229	21005	21005		
VMAGALEGDLFIGPK	15	Unmodified	_VMAGALEGDLFIGPK_			0	0	0	P42025	P42025	P42025	ACTR1B	Beta-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.405252	1516.79595	0.62931	0.00047791	1.282	0.00097354	1.9113	0.0014514	759.406080928757	14.764	0.15961	14.764	14.719	14.879	0	387	31	1.06589869032374	0.0200782861239661	1.06589869032374	430.809170193615	0	8.11513313835547						394	19	4	NaN	NaN	NaN	4.5684E-06	1	19041	84.309	0	1	86665			21006	1039	17720	18230	21006	21006		
VMAGALEGDLFIGPK	15	Unmodified	_VMAGALEGDLFIGPK_			0	0	0	P42025	P42025	P42025	ACTR1B	Beta-centractin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.405252	1516.79595	0.92931	0.00070572	2.1927	0.0016652	3.1221	0.0023709	759.406489573593	14.772	0.15075	14.772	14.719	14.87	0	306	49	1.12000185836644	0.0320191966216983	1.12000185836644	452.676292427292	0	12.9413456816502						374	18	3	NaN	NaN	NaN	1.5239E-05	1	19042	101.45	0	1	75907			21007	1039	17720	18230	21007	21007		
VMDDLDR	7	Unmodified	_VMDDLDR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.20001	862.385467	-1.1107	-0.00048004	3.7809	0.0016341	2.6702	0.0011541	432.20136818082	4.3169	0.15953	4.3169	4.2904	4.4499	0	795	34	0.790287188799094	0.0225015628542545	0.790287188799094	321.59623241232	0	9.15669384482061						269	19	3	NaN	NaN	NaN	0.068777	1	1750	51.456	45.709	1	128200			21008	1136	17721	18231	21008	21008		
VMDIPYLNLEGPDLQPK	17	Unmodified	_VMDIPYLNLEGPDLQPK_			0	0	0	O95453	O95453	O95453	PARN	Poly(A)-specific ribonuclease PARN	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.503152	1940.99175	1.9002	0.001846	-1.9767	-0.0019204	-0.076547	-7.4366E-05	972.002976059521	17.734	0.17733	17.734	17.628	17.805	0	219	46	1.17788915118882	0.0298882290597779	1.17788915118882	475.130795614523	0	12.0561582881962						490	21	4	NaN	NaN	NaN	5.1246E-10	1	30533	79.235	76.151	1	105470			21009	435	17722	18232	21009	21009		
VMDVTEDEEEEIK	13	Unmodified	_VMDVTEDEEEEIK_			0	0	0	O95819;Q8N4C8	O95819	O95819	MAP4K4;MINK1	Mitogen-activated protein kinase kinase kinase kinase 4;Misshapen-like kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.347994	1564.68143	2.1222	0.0016625	1.0605	0.00083072	3.1827	0.0024932	783.851001422425	8.0414	0.11543	8.0414	7.997	8.1124	0	396	49	1.05987478976334	0.0321429928417942	1.05987478976334	428.25588734512	0	12.9877850236103						255	14	3	NaN	NaN	NaN	0.00032145	1	20474	71.066	65.57	1	53065			21010	457	17723	18233	21010	21010		
VMEGTVAAQDEFYR	14	Unmodified	_VMEGTVAAQDEFYR_			0	0	0	P41240	P41240	P41240	CSK	Tyrosine-protein kinase CSK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.37468	1614.73481	1.7347	0.0014023	-1.6264	-0.0013147	0.10827	8.7525E-05	808.874288792227	9.3632	0.14187	9.3632	9.3278	9.4696	0	387	37	1.06589869032374	0.0240906221251305	1.06589869032374	430.572800798342	0	9.73147517259963						416	17	4	NaN	NaN	NaN	0.017034	1	22029	43.613	39.63	1	102920			21011	1034	17724	18234	21011	21011		
VMEHFIK	7	Unmodified	_VMEHFIK_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.241481	902.468409	0.85947	0.00038869	0.86317	0.00039036	1.7226	0.00077905	452.24213088659	4.8489	0.39901	4.8489	4.7159	5.1149	0	735	85	0.831145085810763	0.0571057145626805	0.831145085810763	337.987460348665	0	23.2221976234251						1119	46	5	NaN	NaN	NaN	0.0077298	1	2372	76.833	52.014	1	1032400			21012	638	17725	18235	21012	21012		
VMEIVDADEK	10	Unmodified	_VMEIVDADEK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.778822	1147.54309	1.3318	0.00076551	2.8625	0.0016453	4.1943	0.0024108	574.780973045334	6.9594	0.25722	6.9594	6.8796	7.1368	0	585	67	0.932794566565362	0.0446017870007702	0.932794566565362	378.106853377602	0	18.0792662632835						622	30	4	NaN	NaN	NaN	3.7813E-05	1	7990	78.816	63.234	1	208830			21013	3430	17726	18236	21013	21013		
VMETQAQVDELK	12	Unmodified	_VMETQAQVDELK_			0	0	0	P51809	P51809	P51809	VAMP7	Vesicle-associated membrane protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.847767	1389.68098	1.8259	0.0012706	-0.53	-0.0003688	1.2959	0.00090176	695.847666249552	6.7111	0.15073	6.7111	6.6668	6.8175	0	462	49	1.01562323939346	0.0322452204768515	1.01562323939346	410.828484123961	0	13.0434737360472						416	18	4	NaN	NaN	NaN	0.00042358	1	15134	82.437	72.923	1	122030			21014	1199	17727	18237	21014	21014		
VMETSAQSSGDHQEQHVSVQEMQELK	26	Unmodified	_VMETSAQSSGDHQEQHVSVQEMQELK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	736.336826	2941.3182	0.81412	0.00059947	0.37579	0.00027671	1.1899	0.00087617	736.838466874059	7.0747	0.071043	7.0747	7.0481	7.1191	0	516	22	0.979317271586824	0.014137541397	0.979317271586824	788.150808656871	0	11.3778394476908						191	9	5	NaN	NaN	NaN	0.043514	1	38133	22.906	22.888	1	37833			21015	667	17728	18238	21015	21015		
VMETSAQSSGDHQEQHVSVQEMQELK	26	Unmodified	_VMETSAQSSGDHQEQHVSVQEMQELK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	981.446676	2941.3182	1.884	0.0018491	-0.14477	-0.00014208	1.7393	0.001707	981.781592374125	7.0747	0.044438	7.0747	7.0569	7.1014	0	327	25	1.10599442759226	0.0160162094863308	1.10599442759226	667.576153326508	0	9.66735387901792						101	6	4	NaN	NaN	NaN	0.019112	1	38134	17.378	17.229	1	14846			21016	667	17728	18238	21016	21016		
VMEYINR	7	Unmodified	_VMEYINR_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.73402	923.453487	-0.7519	-0.00034793	1.6223	0.00075068	0.87038	0.00040275	462.734850350487	5.381	0.23937	5.381	5.3012	5.5405	0	756	40	0.816857749704129	0.026548391943247	0.816857749704129	332.064314631986	0	10.7922996120301						489	28	4	NaN	NaN	NaN	0.01214	1	2757	54.056	40.504	1	214000			21017	1503	17729	18239	21017	21017		
VMFEVWR	7	Unmodified	_VMFEVWR_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.746931	965.479308	-0.63092	-0.0003052	0.39873	0.00019288	-0.23219	-0.00011232	483.746476847834	12.972	0.12413	12.972	12.91	13.034	0	744	61	0.82502364452135	0.0408124648651854	0.82502364452135	335.169795176278	0	16.5802587360261						407	15	3	NaN	NaN	NaN	0.011221	1	3548	61.494	47.847	1	97986			21018	1583	17730	18240	21018	21018		
VMFSSFGQIEECR	13	Unmodified	_VMFSSFGQIEECR_			0	0	0	Q92879	Q92879	Q92879	CELF1	CUGBP Elav-like family member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.357976	1588.7014	2.4358	0.0019373	-0.039797	-3.1653E-05	2.396	0.0019057	795.357993908362	12.848	0.13301	12.848	12.804	12.937	0	396	31	1.05987478976334	0.0200865957702232	1.05987478976334	428.19908915192	0	8.11516803309655						348	16	4	NaN	NaN	NaN	2.4403E-05	1	21228	115.41	106.94	1	94538			21019	2437	17731	18241	21019	21019		
VMGTFSTVTSTVK	13	Unmodified	_VMGTFSTVTSTVK_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.355228	1356.6959	1.2866	0.00087405	2.8503	0.0019363	4.1368	0.0028104	679.35804012417	9.3366	0.21287	9.3366	9.2656	9.4785	0	471	85	1.00957851518677	0.0564603712879649	1.00957851518677	408.481127375311	0	22.8441827642002						699	25	4	NaN	NaN	NaN	0.00080684	1	14098	61.577	45.996	1	288850			21020	580	17732	18242	21020	21020		
VMGTFSTVTSTVK	13	Oxidation (M)	_VM(Oxidation (M))GTFSTVTSTVK_	VM(1)GTFSTVTSTVK	VM(49)GTFSTVTSTVK	0	1	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.352685	1372.69082	0.9128	0.00062742	2.3014	0.0015819	3.2142	0.0022093	687.35470121365	7.589	0.1418	7.589	7.527	7.6688	0	492	31	0.995464410099171	0.0201699767195437	0.995464410099171	402.723146605118	0	8.15992657199808						194	17	3	NaN	NaN	NaN	0.011212	1	14572	48.701	42.01	1	41534			21021	580	17732	18243	21021	21021	153	
VMIGENVDEK	10	Unmodified	_VMIGENVDEK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.278989	1132.54342	2.2414	0.0012715	0.53956	0.00030608	2.781	0.0015776	567.279452292235	5.576	0.38127	5.576	5.4697	5.8509	0	609	52	0.916577990479294	0.0344865119804736	0.916577990479294	371.591920045426	0	13.9812534619041						990	44	6	NaN	NaN	NaN	0.00035449	1	7597	108.3	64.569	1	1038900			21022	922	17733	18244	21022	21022		
VMIGENVDEK	10	Oxidation (M)	_VM(Oxidation (M))IGENVDEK_	VM(1)IGENVDEK	VM(70)IGENVDEK	0	1	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.276446	1148.53834	1.4946	0.00085982	0.76247	0.00043863	2.2571	0.0012984	575.276827353617	4.6539	0.15959	4.6539	4.6273	4.7869	0	618	31	0.910492137470517	0.0202875850561227	0.910492137470517	369.062809664714	0	8.22345722053751						251	19	2	NaN	NaN	NaN	0.031149	1	8017	69.716	33.505	1	193580			21023	922	17733	18245	21023	21023	321	
VMIPQDEYPEINFVGLLIGPR	21	Unmodified	_VMIPQDEYPEINFVGLLIGPR_			0	0	0	Q15637	Q15637	Q15637	SF1	Splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	800.759244	2399.2559	0.90074	0.00072127	3.694	0.002958	4.5947	0.0036793	801.096200821159	20.093	0.035451	20.093	20.084	20.119	0	393	64	1.0618830335572	0.0421673255783088	1.0618830335572	641.631754397399	0	25.4791669459321						227	5	4	NaN	NaN	NaN	0.01861	1	36341	29.217	29.146	1	73011			21024	1858	17734	18246	21024	21024		
VMIPVPAGVEDGQTVR	16	Unmodified	_VMIPVPAGVEDGQTVR_			0	0	0	Q96EY1	Q96EY1	Q96EY1	DNAJA3	DnaJ homolog subfamily A member 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.442897	1666.87124	2.2313	0.0018619	-0.89142	-0.00074384	1.3399	0.001118	834.442410634789	12.183	0.16851	12.183	12.094	12.263	0	357	58	1.08596037261705	0.0380988236514024	1.08596037261705	438.560050259741	0	15.3860328946719						624	20	4	NaN	NaN	NaN	0.0028313	1	23550	38.584	30.619	1	187740			21025	2520	17735	18247	21025	21025		
VMLESFIDTQK	11	Unmodified	_VMLESFIDTQK_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.836671	1309.65879	1.7643	0.0011571	0.30135	0.00019763	2.0656	0.0013547	656.339071483897	12.937	0.17736	12.937	12.884	13.061	0	492	73	0.995464410099171	0.0484481440475263	0.995464410099171	402.916352868678	0	19.6094901081808						653	21	3	NaN	NaN	NaN	0.00037878	1	12643	65.933	46.677	1	199370			21026	1144	17736	18248	21026	21026		
VMLGETNPADSK	12	Unmodified	_VMLGETNPADSK_			0	0	0	P22392;O60361;P15531	P22392;P15531	P22392	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.308277	1260.602	1.234	0.00077906	-1.8343	-0.001158	-0.60026	-0.00037895	631.307535117215	5.4254	0.15072	5.4254	5.3455	5.4962	0	570	28	0.942920803299286	0.0182196558414446	0.942920803299286	381.804225909806	0	7.37743994039101						216	18	3	NaN	NaN	NaN	0.070182	1	11224	16.288	12.68	1	44150			21027	805;714	17737	18249	21027	21027		
VMLGETNPADSK	12	Unmodified	_VMLGETNPADSK_			0	0	0	P22392;O60361;P15531	P22392;P15531	P22392	NME2;NME2P1;NME1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.308277	1260.602	2.9105	0.0018375	0.23164	0.00014624	3.1422	0.0019837	631.308804988668	5.6381	0.63852	5.6381	5.4785	6.117	8.8818E-16	534	97	0.967195187796614	0.0647407217617153	0.967195187796614	391.633316826482	0	26.2145882415335						1682	73	4	NaN	NaN	NaN	1.8147E-07	1	11226	144.47	118.02	1	3089300			21028	805;714	17737	18249	21028	21028		
VMLLQQGLNDR	11	Unmodified	_VMLLQQGLNDR_			0	0	0	Q9BPX3	Q9BPX3	Q9BPX3	NCAPG	Condensin complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.847904	1285.68126	1.2025	0.00077422	1.2529	0.00080667	2.4554	0.0015809	643.849512608016	10.206	0.15073	10.206	10.135	10.285	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.910090597207	0	8.17220665673244						234	18	4	NaN	NaN	NaN	0.0036975	1	11935	81.163	71.649	1	73414			21029	2687	17738	18250	21029	21029		
VMLYPSRI	8	Unmodified	_VMLYPSRI_			0	0	1	P18077	P18077	P18077	RPL35A	60S ribosomal protein L35a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.775688	977.536823	-0.31411	-0.00015384	-0.61699	-0.00030219	-0.9311	-0.00045603	489.77547860875	10.232	0.12415	10.232	10.188	10.312	0	693	52	0.85967808974117	0.0346255696673232	0.85967808974117	349.187842538837	0	14.0643667822814						283	15	3	NaN	NaN	NaN	0.011469	1	3793	60.709	44.251	1	63598			21030	750	17739	18251	21030	21030		
VMNTGSQFVMEGVK	14	Unmodified	_VMNTGSQFVMEGVK_			0	0	0	Q8WVM8	Q8WVM8	Q8WVM8	SCFD1	Sec1 family domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	763.870719	1525.72688	1.8265	0.0013952	-1.6087	-0.0012288	0.21786	0.00016641	763.869603722099	9.9573	0.11524	9.9573	9.913	10.028	0	432	37	1.035754240522	0.0241405316442127	1.035754240522	418.603399879434	0	9.75647332717813						306	14	4	NaN	NaN	NaN	0.0045664	1	19288	59.731	50.217	1	76073			21031	2381	17740	18252	21031	21031		
VMPFSTACNTPLSNFESHQNYK	22	Unmodified	_VMPFSTACNTPLSNFESHQNYK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	858.058024	2571.15224	1.761	0.001511	-0.29428	-0.00025251	1.4667	0.0012585	858.392309785095	12.981	0.1596	12.981	12.91	13.07	0	495	58	0.993446994398923	0.0383309147863334	0.993446994398923	600.048934735589	0	23.1521406926157						950	19	5	NaN	NaN	NaN	0.00065537	1	37115	36.902	35.959	1	226440			21032	1036	17741	18253	21032	21032		
VMPLIIQGFK	10	Unmodified	_VMPLIIQGFK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.341195	1144.66784	0.2063	0.00011828	-2.0255	-0.0011613	-1.8192	-0.001043	573.340284966319	15.101	0.16846	15.101	15.047	15.216	0	639	94	0.896281965493857	0.0628785029158467	0.896281965493857	363.317382909823	0	25.4884667997146						570	20	4	NaN	NaN	NaN	0.0008858	1	7933	72.492	63.729	1	172930			21033	1154	17742	18254	21033	21033		
VMPNAIVQSVGVSSGK	16	Unmodified	_VMPNAIVQSVGVSSGK_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.92434	1571.83413	2.2479	0.001769	-0.70857	-0.00055759	1.5394	0.0012114	786.923719397992	10.773	0.29263	10.773	10.667	10.959	0	387	46	1.06589869032374	0.0301153570009167	1.06589869032374	430.672735341487	0	12.1680074223856						755	34	3	NaN	NaN	NaN	1.5555E-05	1	20733	78.157	70.192	1	178120			21034	458	17743	18255	21034	21034		
VMPYVDILFGNETEAATFAR	20	Unmodified	_VMPYVDILFGNETEAATFAR_			0	0	0	P55263	P55263	P55263	ADK	Adenosine kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.5539	2243.09326	0.74002	0.00083071	0.39174	0.00043975	1.1318	0.0012705	1123.05659587617	19.543	0.12414	19.543	19.463	19.587	0	87	55	1.26527909472281	0.0356476086940158	1.26527909472281	509.893414021178	0	14.3655901488397						510	15	4	NaN	NaN	NaN	9.7238E-11	1	35129	98.895	98.198	1	95690			21035	1272	17744	18256	21035	21035		
VMQEEIFGPILPIVPVK	17	Unmodified	_VMQEEIFGPILPIVPVK_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.046998	1908.07944	1.4315	0.0013672	-0.12442	-0.00011883	1.3071	0.0012483	955.548682778084	19.375	0.1419	19.375	19.304	19.446	0	183	58	1.20177511391933	0.0378064710753994	1.20177511391933	484.825139098657	0	15.2520445677911						530	17	5	NaN	NaN	NaN	0.0017628	1	29804	61.067	60.447	1	228910			21036	1194	17745	18257	21036	21036		
VMQEEIFGPILPIVPVK	17	Oxidation (M)	_VM(Oxidation (M))QEEIFGPILPIVPVK_	VM(1)QEEIFGPILPIVPVK	VM(49)QEEIFGPILPIVPVK	0	1	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.044455	1924.07436	1.0716	0.001032	-0.28205	-0.00027163	0.78955	0.00076037	963.5459744431	18.807	0.079812	18.807	18.772	18.851	0	189	58	1.1977968526266	0.0378220473806725	1.1977968526266	483.191211260483	0	15.2574126790727						419	10	4	NaN	NaN	NaN	0.0015396	1	30162	49.097	45.361	1	98236			21037	1194	17745	18258	21037	21037	431	
VMQPQILEVNFNPDCER	17	Unmodified	_VMQPQILEVNFNPDCER_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.9957	2087.97685	1.6403	0.0017142	-1.0767	-0.0011251	0.56366	0.00058903	1045.49662872576	14.666	0.15963	14.666	14.613	14.772	0	177	46	1.2057522832638	0.0298308249325894	1.2057522832638	486.126941559876	0	12.0269875412833						626	19	5	NaN	NaN	NaN	0.00017364	1	33148	46.768	45.18	1	113710			21038	1733	17746	18259	21038	21038		
VMQVLNADAIVVK	13	Unmodified	_VMQVLNADAIVVK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.402512	1398.79047	2.5995	0.0018207	-2.0127	-0.0014097	0.58682	0.00041101	700.401752780871	12.875	0.20397	12.875	12.83	13.034	0	456	103	1.01965166402748	0.0683699381700238	1.01965166402748	412.431559647693	0	27.6544639971473						1113	24	5	NaN	NaN	NaN	1.8543E-05	1	15427	103.69	93.436	1	381460			21039	2108	17747	18260	21039	21039		
VMQVLNADAIVVK	13	Oxidation (M)	_VM(Oxidation (M))QVLNADAIVVK_	VM(1)QVLNADAIVVK	VM(60)QVLNADAIVVK	0	1	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.39997	1414.78539	1.7845	0.0012642	0.31862	0.00022571	2.1032	0.0014899	708.400516301559	10.72	0.14189	10.72	10.658	10.8	0	447	37	1.02569221487577	0.0241538670444676	1.02569221487577	414.828932117724	0	9.76874224767664						268	17	3	NaN	NaN	NaN	0.013273	1	15943	60	54.849	1	72387			21040	2108	17747	18261	21040	21040	585	
VMSDFAINQEQK	12	Unmodified	_VMSDFAINQEQK_			0	0	0	Q96EY7	Q96EY7	Q96EY7	PTCD3	Pentatricopeptide repeat domain-containing protein 3, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.340109	1408.66566	2.2984	0.0016212	-1.8774	-0.0013242	0.42102	0.00029697	705.34015109375	7.7576	0.22171	7.7576	7.7044	7.9261	0	501	64	0.98941132619024	0.0423540410957373	0.98941132619024	400.1723983136	0	17.1303054199069						784	26	5	NaN	NaN	NaN	1.917E-05	1	15717	115.41	78.46	1	217570			21041	2522	17748	18262	21041	21041		
VMSEFNNNFR	10	Unmodified	_VMSEFNNNFR_			0	0	0	P08962	P08962	P08962	CD63	CD63 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.287679	1256.56081	2.0801	0.001309	0.71262	0.00044845	2.7927	0.0017574	629.288582227331	7.8197	0.34599	7.8197	7.7398	8.0858	0	576	37	0.938871150116794	0.0242979231728671	0.938871150116794	380.177691192663	0	9.83897346455706						618	40	4	NaN	NaN	NaN	2.7969E-07	1	11103	158.61	140.21	1	535190			21042	593	17749	18263	21042	21042		
VMSEFNNNFR	10	Oxidation (M)	_VM(Oxidation (M))SEFNNNFR_	VM(1)SEFNNNFR	VM(59)SEFNNNFR	0	1	0	P08962	P08962	P08962	CD63	CD63 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.285137	1272.55572	1.7428	0.0011106	-1.9523	-0.0012442	-0.20952	-0.00013353	637.283199441001	6.1614	0.20399	6.1614	6.1081	6.3121	8.8818E-16	579	49	0.936845902828289	0.0324106998985512	0.936845902828289	379.305786057914	0	13.1222925398867						317	24	3	NaN	NaN	NaN	0.0015122	1	11557	58.916	54.376	1	86343			21043	593	17749	18264	21043	21043	163	
VMSQEIQEQLHK	12	Unmodified	_VMSQEIQEQLHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.585414	1468.73441	-1.2557	-0.00061601	-0.27268	-0.00013377	-1.5283	-0.00074978	490.585625730347	6.2323	0.17736	6.2323	6.1614	6.3387	0	795	31	0.790287188799094	0.0204573895443732	0.790287188799094	479.259700539781	0	12.4061259322203						322	21	4	NaN	NaN	NaN	1.6112E-05	1	17542	90.142	75.687	1	116820			21044	1737	17750	18265	21044	21044		
VMSQEIQEQLHK	12	Unmodified	_VMSQEIQEQLHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.374483	1468.73441	2.1562	0.0015856	-2.1176	-0.0015572	0.038591	2.8379E-05	735.373680024904	6.2411	0.2838	6.2411	6.1879	6.4717	0	417	55	1.04580932352505	0.0361958137667961	1.04580932352505	422.814629763802	0	14.6337570841525						623	33	6	NaN	NaN	NaN	2.0307E-07	1	17543	147.78	121.92	1	238320			21045	1737	17750	18265	21045	21045		
VMTIAPGLFGTPLLTSLPEK	20	Unmodified	_VMTIAPGLFGTPLLTSLPEK_			0	0	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1043.08685	2084.15915	1.0087	0.0010522	-0.31414	-0.00032767	0.69459	0.00072452	1043.58808840854	19.649	0.10642	19.649	19.614	19.72	0	72	154	1.27517645957152	0.10117497419021	1.27517645957152	514.123124393758	0	40.7915261065962						1731	13	5	NaN	NaN	NaN	1.1181E-22	1	33088	178.51	167.75	1	678350			21046	2667	17751	18266	21046	21046		
VMTIAPGLFGTPLLTSLPEK	20	Oxidation (M)	_VM(Oxidation (M))TIAPGLFGTPLLTSLPEK_	VM(1)TIAPGLFGTPLLTSLPEK	VM(120)TIAPGLFGTPLLTSLPEK	0	1	0	Q99714	Q99714	Q99714	HSD17B10	3-hydroxyacyl-CoA dehydrogenase type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.08431	2100.15406	1.5312	0.0016094	-0.88064	-0.00092563	0.65058	0.00068382	1051.58505157089	18.798	0.11529	18.798	18.754	18.869	0	138	133	1.23157729878518	0.0872582379118563	1.23157729878518	496.519871881811	0	35.1788305544146						1294	14	4	NaN	NaN	NaN	1.9287E-10	1	33327	117.77	112.67	1	380610			21047	2667	17751	18267	21047	21047	616	
VMTIPYQPMPASSPVICAGGQDR	23	Unmodified	_VMTIPYQPMPASSPVICAGGQDR_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1238.09509	2474.17562	0.88248	0.0010926	-0.75577	-0.00093572	0.12671	0.00015688	1238.59561872301	13.974	0.097539	13.974	13.93	14.028	0	63	43	1.28111162701928	0.0276993500963147	1.28111162701928	515.976789927652	0	11.1561096194498						330	12	4	NaN	NaN	NaN	2.0092E-09	1	36701	103.63	101.18	1	61460			21048	1833	17752	18268	21048	21048		
VMTIPYQPMPASSPVICAGGQDR	23	Unmodified	_VMTIPYQPMPASSPVICAGGQDR_			0	0	0	Q15365	Q15365	Q15365	PCBP1	Poly(rC)-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.732484	2474.17562	1.101	0.00090911	0.35853	0.00029605	1.4595	0.0012052	826.067847419175	13.966	0.062056	13.966	13.939	14.001	0	522	79	0.975277694896658	0.0524709829349579	0.975277694896658	589.198664728177	0	31.6995182439071						339	8	4	NaN	NaN	NaN	0.015755	1	36702	16.265	16.201	1	50016			21049	1833	17752	18268	21049	21049		
VMTVNYNTHGELGEGAR	17	Unmodified	_VMTVNYNTHGELGEGAR_			0	0	0	P82663	P82663	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	924.438874	1846.8632	2.3808	0.0022009	-1.8809	-0.0017388	0.49989	0.00046212	924.437055301705	6.72	0.053174	6.72	6.6934	6.7466	0	282	25	1.13599383354359	0.0159831763368303	1.13599383354359	458.397034504867	0	6.44954261055875						105	7	3	NaN	NaN	NaN	2.0503E-05	1	28403	66.485	63.401	1	18412			21050	1470	17753	18269	21050	21050		
VMTVNYNTHGELGEGAR	17	Unmodified	_VMTVNYNTHGELGEGAR_			0	0	0	P82663	P82663	P82663	MRPS25	28S ribosomal protein S25, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.628342	1846.8632	0.88274	0.00054432	0.79999	0.0004933	1.6827	0.0010376	616.629171294068	6.72	0.079808	6.72	6.6845	6.7644	0	621	37	0.908462957275599	0.0243552312702084	0.908462957275599	549.873176354842	0	14.7417000023519						206	10	3	NaN	NaN	NaN	3.1786E-07	1	28404	110.91	98.324	1	51031			21051	1470	17753	18269	21051	21051		
VMVELLGSYTEDNASQAR	18	Unmodified	_VMVELLGSYTEDNASQAR_			0	0	0	Q7L2H7	Q7L2H7	Q7L2H7	EIF3M	Eukaryotic translation initiation factor 3 subunit M	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.978029	1981.94151	0.974	0.00096619	0.38491	0.00038182	1.3589	0.001348	992.479849147041	13.283	0.11528	13.283	13.23	13.345	0	99	40	1.25735632164274	0.0257613660817553	1.25735632164274	507.111442455791	0	10.389961292979						278	14	3	NaN	NaN	NaN	6.6537E-09	1	31312	102.57	98.26	1	51936			21052	2115	17754	18270	21052	21052		
VMVLDFVTPTPLGTR	15	Unmodified	_VMVLDFVTPTPLGTR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	823.452733	1644.89091	1.8668	0.0015372	-0.58081	-0.00047827	1.286	0.001059	823.452552322832	17.601	0.22168	17.601	17.521	17.743	0	381	115	1.06991323971056	0.0761714978837398	1.06991323971056	432.12708671588	0	30.7648940583162						2271	26	5	NaN	NaN	NaN	5.4394E-17	1	22895	192.14	127.23	1	1446100			21053	1914	17755	18271	21053	21053		
VMVQPINLIFR	11	Unmodified	_VMVQPINLIFR_			0	0	0	P62304	P62304	P62304	SNRPE	Small nuclear ribonucleoprotein E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.389208	1328.76386	0.66175	0.00044032	0.63386	0.00042176	1.2956	0.00086208	665.390213424493	17.388	0.19507	17.388	17.326	17.521	0	516	94	0.979317271586824	0.0625832085547734	0.979317271586824	396.32126210437	0	25.3268852909941						1462	23	6	NaN	NaN	NaN	1.8974E-05	1	13260	113.7	98.936	1	1954800			21054	1381	17756	18272	21054	21054		
VMVQPINLIFR	11	Oxidation (M)	_VM(Oxidation (M))VQPINLIFR_	VM(1)VQPINLIFR	VM(120)VQPINLIFR	0	1	0	P62304	P62304	P62304	SNRPE	Small nuclear ribonucleoprotein E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.386665	1344.75878	1.0016	0.00067447	-2.4568	-0.0016543	-1.4551	-0.00097987	673.38564994753	16.032	0.21284	16.032	15.952	16.165	0	522	64	0.975277694896658	0.0424185110568702	0.975277694896658	394.638170204994	0	17.1643047656057						1008	25	5	NaN	NaN	NaN	0.00018301	1	13758	121.67	105.79	1	763220			21055	1381	17756	18273	21055	21055	490	
VMVTDADR	8	Unmodified	_VMVTDADR_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.72111	905.427666	0.17948	8.1433E-05	-1.7833	-0.00080913	-1.6038	-0.0007277	453.720191672025	3.2705	0.15074	3.2705	3.1996	3.3503	0	762	22	0.812773098473386	0.0142992632781638	0.812773098473386	330.500263373553	0	5.81455056565903						130	18	2	NaN	NaN	NaN	0.019378	1	2415	42.835	25.14	1	57554			21056	1459	17757	18274	21056	21056		
VMVTNVTSLLK	11	Unmodified	_VMVTNVTSLLK_			0	0	0	Q9Y490;Q9Y4G6	Q9Y490	Q9Y490	TLN1;TLN2	Talin-1;Talin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.852124	1203.68969	0.65195	0.00039303	-1.7609	-0.0010615	-1.1089	-0.00066851	602.85118251759	13.602	0.11525	13.602	13.558	13.673	0	558	25	0.951016745717027	0.0161851618294636	0.951016745717027	385.27962282608	0	6.55699604987853						236	14	4	NaN	NaN	NaN	0.00047083	1	9588	83.358	67.776	1	90660			21057	3406	17758	18275	21057	21057		
VMWNTAVHSEFMHDHADYGFPSCEGK	26	Unmodified	_VMWNTAVHSEFMHDHADYGFPSCEGK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	763.825734	3051.27383	0.93829	0.00071669	1.1043	0.00084348	2.0426	0.0015602	764.328708438737	11.553	0.11534	11.553	11.509	11.624	0	546	46	0.959108205975751	0.0303450838148018	0.959108205975751	771.755756648328	0	24.417467157654						494	14	6	NaN	NaN	NaN	0.00015807	1	38290	35.349	35.235	1	147130			21058	475	17759	18276	21058	21058		
VMYTPMAPGNYLISVK	16	Unmodified	_VMYTPMAPGNYLISVK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.459701	1782.90485	2.1251	0.0018965	-0.26092	-0.00023286	1.8642	0.0016637	892.961359921286	15.207	0.22166	15.207	15.127	15.349	0	270	73	1.14398322290989	0.0478968302573193	1.14398322290989	461.74433789664	0	19.3325301731769						784	26	4	NaN	NaN	NaN	3.5171E-05	1	26763	84.309	69.334	1	306850			21059	326	17760	18277	21059	21059		
VNAEGSVDSVFSQVCTHLDALK	22	Unmodified	_VNAEGSVDSVFSQVCTHLDALK_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	792.721518	2375.14272	0.65385	0.00051832	0.53486	0.000424	1.1887	0.00094232	793.056479358835	17.114	0.11526	17.114	17.069	17.184	0	444	85	1.02770517576159	0.0564213754491176	1.02770517576159	621.016438706894	0	34.0940208094116						919	14	5	NaN	NaN	NaN	1.5133E-16	1	36236	150.11	135.09	1	246630			21060	485	17761	18278	21060	21060		
VNAELQAR	8	Unmodified	_VNAELQAR_			0	0	0	O95831	O95831	O95831	AIFM1	Apoptosis-inducing factor 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.748516	899.482479	-0.21061	-9.4934E-05	1.4203	0.0006402	1.2097	0.00054527	450.74907192935	3.1198	0.18621	3.1198	3.0932	3.2794	-4.4409E-16	783	25	0.798467866007927	0.0163545256042036	0.798467866007927	324.715329096604	0	6.65094412670459						186	22	2	NaN	NaN	NaN	0.040654	1	2311	44.767	38.005	1	50483			21061	458	17762	18279	21061	21061		
VNALLPTETFIPVIR	15	Unmodified	_VNALLPTETFIPVIR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	841.995623	1681.97669	1.4146	0.0011911	0.10652	8.9693E-05	1.5211	0.0012808	841.995845123558	18.204	0.088668	18.204	18.16	18.248	0	345	82	1.09397730668811	0.0540733643973776	1.09397730668811	441.764935740507	0	21.8356598461788						598	11	4	NaN	NaN	NaN	8.8423E-05	1	23974	65.879	52.081	1	210030			21062	2900	17763	18280	21062	21062		
VNAVNPTVVMTSMGQATWSDPHK	23	Unmodified	_VNAVNPTVVMTSMGQATWSDPHK_			0	0	0	Q7Z4W1	Q7Z4W1	Q7Z4W1	DCXR	L-xylulose reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.066631	2469.17806	1.3762	0.001134	0.53268	0.00043897	1.9088	0.001573	824.400763456623	14.134	0.14189	14.134	14.054	14.196	0	426	22	1.03977710643793	0.0140790597417815	1.03977710643793	628.172067776014	0	8.50573840833545						264	17	5	NaN	NaN	NaN	0.054688	1	36676	10.973	9.8786	1	46081			21063	2142	17764	18281	21063	21063		
VNCIQWHQDSGCLYSCSDDK	20	Unmodified	_VNCIQWHQDSGCLYSCSDDK_			0	0	0	Q15061	Q15061	Q15061	WDR43	WD repeat-containing protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	824.671952	2470.99403	1.4962	0.0012339	1.3119	0.0010819	2.808	0.0023157	825.007557815202	8.485	0.070947	8.485	8.4584	8.5293	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	590.423214440855	0	9.76185747124362						210	9	5	NaN	NaN	NaN	1.5749E-07	1	36682	86.798	86.699	1	44813			21064	1807	17765	18282	21064	21064		
VNDASVNTDPATSASTVDVK	20	Unmodified	_VNDASVNTDPATSASTVDVK_			0	0	0	Q86VP1	Q86VP1	Q86VP1	TAX1BP1	Tax1-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.981823	1989.94909	1.667	0.0016603	-0.44645	-0.00044466	1.2205	0.0012156	995.981531784605	7.0925	0.044246	7.0925	7.066	7.1102	0	180	25	1.203763835057	0.0159086785016753	1.203763835057	485.483171276918	0	6.41603898114499						69	6	2	NaN	NaN	NaN	3.1214E-07	1	31453	70.638	67.553	1	14093			21065	2174	17766	18283	21065	21065		
VNDDVGIDWTNENDR	15	Unmodified	_VNDDVGIDWTNENDR_			0	0	0	Q14432	Q14432	Q14432	PDE3A	cGMP-inhibited 3,5-cyclic phosphodiesterase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.387362	1760.76017	2.701	0.0023806	-0.36891	-0.00032516	2.3321	0.0020555	881.38630307886	10.073	0.10641	10.073	10.028	10.135	0	360	37	1.08395544855938	0.0240640669775463	1.08395544855938	437.557874072683	0	9.71388815124442						242	13	3	NaN	NaN	NaN	8.7804E-05	1	26153	79.235	78.183	1	53186			21066	1751	17767	18284	21066	21066		
VNDFLAEIFK	10	Unmodified	_VNDFLAEIFK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.321514	1194.62847	0.10882	6.5109E-05	-1.4751	-0.00088257	-1.3663	-0.00081746	598.320838894556	18.426	0.15078	18.426	18.381	18.532	0	597	37	0.924688525662974	0.024324866464508	0.924688525662974	374.645633971737	0	9.85543214277436						383	18	4	NaN	NaN	NaN	0.020454	1	9288	47.561	35.494	1	138290			21067	1713	17768	18285	21067	21067		
VNDTIQIDLETGK	13	Unmodified	_VNDTIQIDLETGK_			0	0	0	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.377746	1444.74094	2.0546	0.0014863	0.24606	0.00017799	2.3007	0.0016643	723.377906423894	10.693	0.35468	10.693	10.605	10.959	0	465	43	1.01360860968299	0.0282106679353067	1.01360860968299	409.859568273128	0	11.4071763698589						920	41	5	NaN	NaN	NaN	3.4531E-13	1	16823	178.65	106.29	1	690750			21068	1394	17769	18286	21068	21068		
VNEASGDGDGEDAVVILEK	19	Unmodified	_VNEASGDGDGEDAVVILEK_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.957817	1915.90108	2.4941	0.0023918	-0.46682	-0.00044766	2.0273	0.0019441	959.458485568136	10.534	0.1685	10.534	10.41	10.578	0	267	91	1.14597988355104	0.05987929351818	1.14597988355104	462.302369115729	0	24.1560429216713						633	20	4	NaN	NaN	NaN	8.6518E-20	1	29966	162.41	144.99	1	126290			21069	2491	17770	18287	21069	21069		
VNEFGESYEEK	11	Unmodified	_VNEFGESYEEK_			0	0	0	Q96KA5	Q96KA5	Q96KA5	CLPTM1L	Cleft lip and palate transmembrane protein 1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.793514	1329.57248	2.0785	0.0013839	1.5083	0.0010042	3.5868	0.0023881	665.794611858063	5.6203	0.15078	5.6203	5.5583	5.7091	0	525	46	0.973257487423603	0.0303198952028392	0.973257487423603	393.866450604563	0	12.2701234365608						303	18	3	NaN	NaN	NaN	0.0020405	1	13264	90.142	80.628	1	83687			21070	2573	17771	18288	21070	21070		
VNEIVETNRPDSK	13	Unmodified	_VNEIVETNRPDSK_			0	0	1	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.886269	1499.75799	2.4387	0.0018312	-0.95547	-0.00071745	1.4832	0.0011137	750.885458382343	3.5633	0.15958	3.5633	3.5278	3.6874	0	465	40	1.01360860968299	0.0261938098951453	1.01360860968299	409.716941255894	0	10.5879602516733						311	19	4	NaN	NaN	NaN	8.9135E-08	1	18521	130.99	73.104	1	86053			21071	1790	17772	18289	21071	21071		
VNEIVETNRPDSK	13	Unmodified	_VNEIVETNRPDSK_			0	0	1	Q15008	Q15008	Q15008	PSMD6	26S proteasome non-ATPase regulatory subunit 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.926605	1499.75799	-0.3108	-0.00015569	2.0451	0.0010244	1.7343	0.00086876	500.92776561432	3.5633	0.11526	3.5633	3.5366	3.6519	0	810	34	0.78005493425781	0.0225203682551777	0.78005493425781	472.963254899718	0	13.6545597030848						264	14	3	NaN	NaN	NaN	0.00021828	1	18522	90.689	59.771	1	72702			21072	1790	17772	18289	21072	21072		
VNEMIIGGGMAFTFLK	16	Unmodified	_VNEMIIGGGMAFTFLK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	864.446594	1726.87863	1.554	0.0013434	-1.3974	-0.001208	0.15664	0.0001354	864.947624951506	18.905	0.19507	18.905	18.869	19.064	0	300	55	1.12400150285141	0.0359918600529883	1.12400150285141	453.792720608901	0	14.5309806541953						678	23	5	NaN	NaN	NaN	4.2744E-05	1	25239	102.26	90.777	1	159600			21073	484	17773	18290	21073	21073		
VNESSHYDLAFTDVHFK	17	Unmodified	_VNESSHYDLAFTDVHFK_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	502.99044	2007.93266	-0.66072	-0.00033234	0.43512	0.00021886	-0.22561	-0.00011348	503.241504172	10.933	0.09755	10.933	10.888	10.986	0	747	31	0.822982596624503	0.0204119004973387	0.822982596624503	663.7791375028	0	16.463280952098						253	12	4	NaN	NaN	NaN	0.072149	1	31771	6.2047	6.0529	1	83731			21074	883	17774	18291	21074	21074		
VNEVGVDVNR	10	Unmodified	_VNEVGVDVNR_			0	0	0	Q7KZ85	Q7KZ85	Q7KZ85	SUPT6H	Transcription elongation factor SPT6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.78837	1099.56219	0.74761	0.00041178	-2.1396	-0.0011785	-1.392	-0.00076671	550.787181753759	4.9021	0.097548	4.9021	4.8667	4.9642	0	669	22	0.875957769340875	0.0142397763386857	0.875957769340875	355.252074349126	0	5.77506160644265						151	12	3	NaN	NaN	NaN	0.052985	1	6699	28.647	16.58	1	38703			21075	2107	17775	18292	21075	21075		
VNEVNQFAAK	10	Unmodified	_VNEVNQFAAK_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.293288	1118.57202	1.8003	0.0010087	-3.7597	-0.0021065	-1.9594	-0.0010978	560.290623968971	4.9199	0.23939	4.9199	4.8401	5.0795	0	612	34	0.914549654013882	0.0223086119453004	0.914549654013882	370.825317713402	0	9.04554288119101						321	28	3	NaN	NaN	NaN	0.00086872	1	7229	79.059	53.805	1	101420			21076	1703	17776	18293	21076	21076		
VNFAMNVGK	9	Unmodified	_VNFAMNVGK_			0	0	0	P14618	P14618	P14618	PKM	Pyruvate kinase PKM	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.25512	978.495686	0.29077	0.00014255	-0.0092391	-4.5295E-06	0.28153	0.00013802	490.255272865107	7.9704	0.23955	7.9704	7.8995	8.139	0	735	64	0.831145085810763	0.0428381991231975	0.831145085810763	337.593588603451	0	17.3999721807923						875	28	5	NaN	NaN	NaN	6.3406E-06	1	3807	138.55	112.33	1	892150			21077	699	17777	18294	21077	21077		
VNFCPLPSEQCYQAPGGPEDR	21	Unmodified	_VNFCPLPSEQCYQAPGGPEDR_			0	0	0	Q15654	Q15654	Q15654	TRIP6	Thyroid receptor-interacting protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1211.03354	2420.05253	0.76128	0.00092193	-0.29453	-0.00035668	0.46675	0.00056525	1211.53424193021	11.669	0.070937	11.669	11.633	11.704	0	87	49	1.26527909472281	0.0316954426134153	1.26527909472281	509.663813093838	0	12.7671595993524						255	9	4	NaN	NaN	NaN	0.036542	1	36440	24.832	23.406	1	39685			21078	1862	17778	18295	21078	21078		
VNFDDYTVNLGGLK	14	Unmodified	_VNFDDYTVNLGGLK_			0	0	0	Q06210	Q06210	Q06210	GFPT1	Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	777.893563	1553.77257	1.1779	0.00091626	0.46773	0.00036385	1.6456	0.0012801	778.39523546454	14.728	0.21287	14.728	14.639	14.852	0	417	67	1.04580932352505	0.0442088234641178	1.04580932352505	422.598582871232	0	17.8642375106854						441	25	2	NaN	NaN	NaN	0.00028835	1	20176	70.195	58.713	1	242450			21079	1558	17779	18296	21079	21079		
VNFGTDFLTAIK	12	Unmodified	_VNFGTDFLTAIK_			0	0	0	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.358628	1324.7027	-0.029522	-1.9584E-05	-4.4076	-0.0029238	-4.4371	-0.0029434	663.35408342239	16.315	0.14185	16.315	16.253	16.395	0	507	103	0.985374541851584	0.0687394392746467	0.985374541851584	398.785190649411	0	27.8191380353343						525	17	4	NaN	NaN	NaN	0.0044479	1	13139	72.922	52.688	1	117900			21080	1870	17780	18297	21080	21080		
VNFHMFDVGGQR	12	Unmodified	_VNFHMFDVGGQR_			0	0	0	P63092;Q5JWF2;P38405	P63092	P63092	GNAS;GNAL	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas;Guanine nucleotide-binding protein G(olf) subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	469.559311	1405.6561	-1.155	-0.00054235	-1.1632	-0.0005462	-2.3182	-0.0010885	469.558992414445	10.942	0.11526	10.942	10.897	11.012	0	825	22	0.769815552739974	0.0143411262073633	0.769815552739974	467.040130853285	0	8.70063151703141						224	14	4	NaN	NaN	NaN	0.0027217	1	15635	54.584	47.026	1	63987			21081	1424	17781	18298	21081	21081		
VNFLPEIITLSK	12	Unmodified	_VNFLPEIITLSK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.405578	1372.7966	0.31143	0.00021408	-0.4491	-0.00030872	-0.13767	-9.4638E-05	687.405630997365	18.009	0.19505	18.009	17.929	18.124	0	504	58	0.987393073566096	0.0383574228971185	0.987393073566096	399.45752644212	0	15.5177929452547						745	23	4	NaN	NaN	NaN	0.0072045	1	14596	65.879	46.555	1	364960			21082	1737	17782	18299	21082	21082		
VNFTVDQIR	9	Unmodified	_VNFTVDQIR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	546.29583	1090.57711	0.54544	0.00029797	1.7457	0.00095367	2.2911	0.0012516	546.296804196714	9.3455	0.27491	9.3455	9.2834	9.5583	0	630	73	0.902373728295776	0.0487037344704411	0.902373728295776	366.002588132177	0	19.7542241190347						1352	32	5	NaN	NaN	NaN	4.3394E-06	1	6480	146.27	115.7	1	1799800			21083	679	17783	18300	21083	21083		
VNHVTLSQPK	10	Unmodified	_VNHVTLSQPK_			0	0	0	P61769	P61769	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.81693	1121.61931	1.7129	0.00096233	-1.4386	-0.00080825	0.27426	0.00015408	561.81591072114	3.0755	0.12413	3.0755	3.04	3.1641	0	657	25	0.884090832094921	0.0162616124916427	0.884090832094921	358.463217918454	0	6.59342878659248						209	15	3	NaN	NaN	NaN	0.00087894	1	7318	85.716	58.011	1	59615			21084	1351	17784	18301	21084	21084		
VNHVTLSQPK	10	Unmodified	_VNHVTLSQPK_			0	0	0	P61769	P61769	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	374.880379	1121.61931	0.19654	7.3678E-05	0.26305	9.8613E-05	0.45959	0.00017229	374.880434756671	3.0755	0.29263	3.0755	3.04	3.3326	0	867	34	0.741107305531458	0.0225769261223968	0.741107305531458	450.728817478029	0	13.7309012304761						365	34	3	NaN	NaN	NaN	0.0063985	1	7319	46.447	29.051	1	112900			21085	1351	17784	18301	21085	21085		
VNHVTLSQPK	10	Unmodified	_VNHVTLSQPK_			0	0	0	P61769	P61769	P61769	B2M	Beta-2-microglobulin;Beta-2-microglobulin form pI 5.3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.81693	1121.61931	2.1148	0.0011881	-0.65802	-0.00036969	1.4568	0.00081843	561.81664277735	3.0755	0.22168	3.0755	3.04	3.2617	0	618	43	0.910492137470517	0.0284026223535851	0.910492137470517	369.167880199717	0	11.5161190908424						327	26	3	NaN	NaN	NaN	0.00063191	1	7320	107.08	66.576	1	97200			21086	1351	17784	18301	21086	21086		
VNIAFNYDMPEDSDTYLHR	19	Unmodified	_VNIAFNYDMPEDSDTYLHR_			0	0	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	767.347792	2299.02155	1.2914	0.00099095	0.61387	0.00047105	1.9053	0.001462	767.682638767555	13.318	0.1508	13.318	13.274	13.425	0	504	37	0.987393073566096	0.0242240595168645	0.987393073566096	596.771684266528	0	14.6408083919823						647	18	6	NaN	NaN	NaN	1.2511E-19	1	35632	157.52	148.76	1	361130			21087	1705	17785	18302	21087	21087		
VNIAFNYDMPEDSDTYLHR	19	Unmodified	_VNIAFNYDMPEDSDTYLHR_			0	0	0	Q13838	Q13838	Q13838	DDX39B	Spliceosome RNA helicase DDX39B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1150.51805	2299.02155	0.46743	0.00053779	2.1296	0.0024501	2.597	0.0029879	1151.02172213494	13.318	0.062068	13.318	13.283	13.345	0	81	64	1.2692388538616	0.041574645421063	1.2692388538616	511.412536779	0	16.7516104756683						365	8	4	NaN	NaN	NaN	0.021141	1	35633	29.217	25.059	1	77041			21088	1705	17785	18302	21088	21088		
VNIGEVLDK	9	Unmodified	_VNIGEVLDK_			0	0	0	Q13523	Q13523	Q13523	PRPF4B	Serine/threonine-protein kinase PRP4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.779482	985.544411	-0.40159	-0.0001983	-1.7422	-0.00086028	-2.1438	-0.0010586	493.778696292654	9.7002	0.13303	9.7002	9.6558	9.7889	0	735	25	0.831145085810763	0.0163181723166257	0.831145085810763	337.560129966547	0	6.62744021718345						146	16	2	NaN	NaN	NaN	0.029234	1	3965	34.781	23.953	1	43512			21089	1677	17786	18303	21089	21089		
VNIHGIFSVASASVIEK	17	Unmodified	_VNIHGIFSVASASVIEK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.991069	1769.96758	1.819	0.0016116	0.92534	0.00081984	2.7443	0.0024314	885.992104725259	14.09	0.11528	14.09	14.054	14.169	0	246	31	1.1599488233373	0.0199460300258694	1.1599488233373	468.214915030647	0	8.05124205987971						238	14	4	NaN	NaN	NaN	0.0023667	1	26423	46.768	41.07	1	52722			21090	450	17787	18304	21090	21090		
VNIIPLIAK	9	Unmodified	_VNIIPLIAK_			0	0	0	Q16181;Q6ZU15	Q16181	Q16181	SEPT7;SEPT14	Septin-7;Septin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.828778	979.643003	0.15775	7.7426E-05	-2.0627	-0.0010124	-1.905	-0.00093501	490.827744561119	13.815	0.15072	13.815	13.762	13.912	0	732	118	0.833184998970724	0.0793911316712732	0.833184998970724	338.416674584048	0	32.2464792391211						877	18	3	NaN	NaN	NaN	0.0054918	1	3844	72.492	0	1	330380			21091	1877	17788	18305	21091	21091		
VNIIPLIAK	9	Unmodified	_VNIIPLIAK_			0	0	0	Q16181;Q6ZU15	Q16181	Q16181	SEPT7;SEPT14	Septin-7;Septin-14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.828778	979.643003	0.10833	5.3172E-05	-0.38927	-0.00019106	-0.28093	-0.00013789	490.828536269602	13.185	0.1153	13.185	13.132	13.247	0	645	61	0.892219381832517	0.0406371291236521	0.892219381832517	362.394797749209	0	16.5056761708398						407	14	3	NaN	NaN	NaN	0.0087121	1	3845	49.325	0	1	130530			21092	1877	17788	18305	21092	21092		
VNIIPVIAK	9	Unmodified	_VNIIPVIAK_			0	0	0	Q9P0V9	Q9P0V9	Q9P0V9	SEPT10	Septin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.820953	965.627353	-0.90022	-0.00043554	-0.21449	-0.00010378	-1.1147	-0.00053932	483.820946060168	11.944	0.062065	11.944	11.908	11.97	0	645	49	0.892219381832517	0.0325051879347241	0.892219381832517	362.467607193886	0	13.2053595023771						151	8	2	NaN	NaN	NaN	0.047521	1	3562	39.324	16.938	1	34990			21093	3149	17789	18306	21093	21093		
VNIISVTNK	9	Unmodified	_VNIISVTNK_			0	0	0	Q9BY44	Q9BY44	Q9BY44	EIF2A	Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	494.295299	986.576045	0.06902	3.4116E-05	-1.522	-0.00075232	-1.453	-0.00071821	494.294843315776	7.2077	0.13301	7.2077	7.1723	7.3053	0	711	28	0.847456455381371	0.0183388204791043	0.847456455381371	344.179852579364	0	7.44799628216538						157	16	2	NaN	NaN	NaN	0.0075663	1	3994	56.378	42.731	1	69495			21094	2796	17790	18307	21094	21094		
VNILEVASGAVLR	13	Unmodified	_VNILEVASGAVLR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.898451	1339.78235	0.060933	4.088E-05	-0.39233	-0.00026322	-0.3314	-0.00022234	670.898128304586	17.184	0.14186	17.184	17.114	17.255	0	516	49	0.979317271586824	0.0322987503458569	0.979317271586824	396.287716955056	0	13.0699196332168						286	17	3	NaN	NaN	NaN	3.5675E-05	1	13594	70.195	39.277	1	70613			21095	1594	17791	18308	21095	21095		
VNILEVASGAVLR	13	Unmodified	_VNILEVASGAVLR_			0	0	0	Q12788	Q12788	Q12788	TBL3	Transducin beta-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.898451	1339.78235	0.67509	0.00045292	1.6018	0.0010746	2.2769	0.0015275	670.899477616552	17.193	0.088664	17.193	17.149	17.238	0	396	76	1.05987478976334	0.0502685125885778	1.05987478976334	428.885882354328	0	20.3415116430931						484	11	3	NaN	NaN	NaN	0.00010161	1	13595	92.707	71.619	1	118900			21096	1594	17791	18308	21096	21096		
VNILFDFVK	9	Unmodified	_VNILFDFVK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.815867	1093.61718	-0.84511	-0.00046297	-0.069578	-3.8116E-05	-0.91469	-0.00050108	547.815967105526	17.326	0.23054	17.326	17.255	17.486	0	663	46	0.880024865079826	0.0305011094694014	0.880024865079826	356.925522669002	0	12.3708145887026						718	27	4	NaN	NaN	NaN	0.00075076	1	6554	110.22	95.456	1	444270			21097	1261	17792	18309	21097	21097		
VNILSDMHLR	10	Unmodified	_VNILSDMHLR_			0	0	0	P51114	P51114	P51114	FXR1	Fragile X mental retardation syndrome-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	399.885135	1196.63358	-2.3446	-0.00093757	-2.9048	-0.0011616	-5.2494	-0.0020992	399.883971984679	11.27	0.070937	11.27	11.243	11.314	0	855	22	0.749315378969369	0.0143591237595029	0.749315378969369	455.37443616131	0	8.72633615867818						66	9	2	NaN	NaN	NaN	0.0052447	1	9358	51.864	36.282	1	16264			21098	1178	17793	18310	21098	21098		
VNIVFNYDMPEDSDTYLHR	19	Unmodified	_VNIVFNYDMPEDSDTYLHR_			0	0	0	O00148	O00148	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.691559	2327.05285	1.0532	0.00081804	1.2042	0.00093527	2.2574	0.0017533	777.026980221962	14.001	0.15075	14.001	13.957	14.107	0	501	46	0.98941132619024	0.0302737974651172	0.98941132619024	597.948249574568	0	18.2958934500424						648	18	6	NaN	NaN	NaN	2.0362E-07	1	35867	77.325	76.926	1	283240			21099	51	17794	18311	21099	21099		
VNIVPVIAK	9	Unmodified	_VNIVPVIAK_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.813128	951.611703	0.2113	0.00010075	0.57098	0.00027225	0.78229	0.000373	476.813363820625	10.232	0.10639	10.232	10.179	10.285	0	630	49	0.902373728295776	0.0324826533406289	0.902373728295776	366.668634084388	0	13.1989327241819						325	13	3	NaN	NaN	NaN	0.0047318	1	3282	65.313	20.546	1	79445			21100	1792	17795	18312	21100	21100		
VNLAELFK	8	Unmodified	_VNLAELFK_			0	0	0	P30044	P30044	P30044	PRDX5	Peroxiredoxin-5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.273835	932.533118	-0.95556	-0.00044651	-0.34355	-0.00016053	-1.2991	-0.00060704	467.273725180254	14.71	0.31923	14.71	14.622	14.941	0	723	94	0.839303037468863	0.0632549660712631	0.839303037468863	341.13995523446	0	25.7103755503906						1387	37	4	NaN	NaN	NaN	0.011762	1	2924	75.243	53.316	1	1653100			21101	895	17796	18313	21101	21101		
VNLFTDFDK	9	Unmodified	_VNLFTDFDK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.776939	1097.53933	0.18046	9.9212E-05	-0.80432	-0.0004422	-0.62386	-0.00034298	549.776674366507	13.354	0.29265	13.354	13.221	13.513	0	648	52	0.890187667287968	0.0345535384849188	0.890187667287968	361.031359304308	0	14.0137989172438						765	34	4	NaN	NaN	NaN	0.0013268	1	6644	88.921	69.433	1	510850			21102	1280	17797	18314	21102	21102		
VNLLSVLEAAK	11	Unmodified	_VNLLSVLEAAK_			0	0	0	Q9BRX8	Q9BRX8	Q9BRX8	FAM213A	Redox-regulatory protein FAM213A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.850438	1155.68632	-0.21042	-0.0001218	0.40904	0.00023677	0.19862	0.00011497	578.850420043401	17.397	0.13299	17.397	17.353	17.486	0	573	43	0.940896116921038	0.0283554323651288	0.940896116921038	381.358904790411	0	11.4928698685782						353	16	3	NaN	NaN	NaN	0.00061628	1	8234	83.358	54.048	1	123050			21103	2718	17798	18315	21103	21103		
VNLQMVYDSPLCR	13	Unmodified	_VNLQMVYDSPLCR_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	797.889443	1593.76433	1.2979	0.0010355	4.5922	0.0036641	5.89	0.0046996	797.892419000043	13.389	0.16856	13.389	13.327	13.496	0	396	46	1.05987478976334	0.0301153570009167	1.05987478976334	428.18731649498	0	12.1665445994711						511	20	4	NaN	NaN	NaN	1.2599E-05	1	21397	113.46	104.99	1	88651			21104	3337	17799	18316	21104	21104		
VNLQNNPGAMEHFHMK	16	Unmodified	_VNLQNNPGAMEHFHMK_			0	0	0	P51572	P51572	P51572	BCAP31	B-cell receptor-associated protein 31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.962779	1865.86651	1.3295	0.00082821	-1.0773	-0.00067114	0.25214	0.00015707	623.296390680389	7.3053	0.14187	7.3053	7.2698	7.4117	0	639	61	0.896281965493857	0.0406427674647416	0.896281965493857	542.459144541027	0	24.5983314620813						632	17	5	NaN	NaN	NaN	2.3925E-09	1	28832	135.5	124.53	1	244110			21105	1191	17800	18317	21105	21105		
VNLQNNPGAMEHFHMK	16	Unmodified	_VNLQNNPGAMEHFHMK_			0	0	0	P51572	P51572	P51572	BCAP31	B-cell receptor-associated protein 31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	933.94053	1865.86651	2.3795	0.0022224	-1.4882	-0.0013899	0.89138	0.00083249	934.440677096259	7.3142	0.079813	7.3142	7.2787	7.3585	0	237	43	1.16593139812432	0.027916769999432	1.16593139812432	470.441738590209	0	11.2641394129053						274	10	4	NaN	NaN	NaN	2.0614E-08	1	28833	104.04	102.33	1	59271			21106	1191	17800	18317	21106	21106		
VNNADDFPNLFR	12	Unmodified	_VNNADDFPNLFR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.34404	1420.67353	1.7408	0.0012383	-1.2973	-0.00092284	0.44353	0.0003155	711.34326456586	13.859	0.14187	13.859	13.806	13.948	0	498	34	0.991429299781895	0.0221946439688537	0.991429299781895	400.955624236388	0	8.97599791451984						352	17	4	NaN	NaN	NaN	4.6186E-11	1	16108	156.57	145.22	1	114010			21107	1625	17801	18318	21107	21107		
VNNSSLIGLGYTQTLK	16	Unmodified	_VNNSSLIGLGYTQTLK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.467426	1706.9203	2.196	0.0018764	2.4897	0.0021274	4.6857	0.0040038	854.469787920004	12.591	0.25716	12.591	12.493	12.751	0	300	172	1.12400150285141	0.113669355772289	1.12400150285141	453.834956105659	0	45.8959591749717						2038	30	6	NaN	NaN	NaN	1.3815E-17	1	24689	220.06	197.11	1	1365900			21108	794	17802	18319	21108	21108		
VNNSTGTSEDPSLQR	15	Unmodified	_VNNSTGTSEDPSLQR_			0	0	0	Q9UHR4	Q9UHR4	Q9UHR4	BAIAP2L1	Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.879172	1603.74379	3.0165	0.0024219	-3.2731	-0.0026279	-0.25663	-0.00020604	802.876348098035	3.7228	0.079794	3.7228	3.6962	3.776	0	435	28	1.03374239103424	0.0181116473716121	1.03374239103424	417.607518377573	0	7.31667790562551						118	10	3	NaN	NaN	NaN	1.0714E-06	1	21702	78.157	71.41	1	18857			21109	3221	17803	18320	21109	21109		
VNNSTMLGASGDYADFQYLK	20	Oxidation (M)	_VNNSTM(Oxidation (M))LGASGDYADFQYLK_	VNNSTM(1)LGASGDYADFQYLK	VNNSTM(130)LGASGDYADFQYLK	0	1	0	P28070	P28070	P28070	PSMB4	Proteasome subunit beta type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.50715	2208.99975	2.2688	0.0025082	-0.99706	-0.0011023	1.2717	0.0014059	1106.00720024313	12.901	0.10643	12.901	12.857	12.963	1.7764E-15	111	40	1.24942920585258	0.0257754900504674	1.24942920585258	503.553927791847	0	10.388223034066						282	13	4	NaN	NaN	NaN	3.6254E-15	1	34771	130.12	127.41	1	44895			21110	873	17804	18321	21110	21110	299	
VNNVVWDLDRPLEEDCTLELLK	22	Unmodified	_VNNVVWDLDRPLEEDCTLELLK_			0	0	1	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	890.786299	2669.33707	1.1172	0.00099515	-0.61603	-0.00054875	0.50113	0.0004464	891.120169702377	17.885	0.15073	17.885	17.841	17.991	0	501	118	0.98941132619024	0.0786141357284366	0.98941132619024	597.493166276222	0	47.474096593696						1482	18	7	NaN	NaN	NaN	6.3377E-17	1	37508	152.59	149.01	1	680870			21111	857	17805	18322	21111	21111		
VNPALAELNLR	11	Unmodified	_VNPALAELNLR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.351137	1208.68772	0.42357	0.00025641	0.0406	2.4577E-05	0.46417	0.00028099	605.351286268777	11.695	0.1064	11.695	11.642	11.749	0	555	52	0.953040030838688	0.034395858934352	0.953040030838688	386.081199784609	0	13.9339314774749						433	13	4	NaN	NaN	NaN	2.3452E-07	1	9705	120.33	107.51	1	266460			21112	678	17806	18323	21112	21112		
VNPCIGGVILFHETLYQK	18	Unmodified	_VNPCIGGVILFHETLYQK_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.70307	2087.08738	0.44551	0.00031039	0.49656	0.00034595	0.94206	0.00065634	697.03807157587	14.799	0.43451	14.799	14.737	15.171	1.7764E-15	480	76	1.00353128488872	0.0504005871247442	1.00353128488872	606.895065588558	0	30.4802332417223						1379	50	6	NaN	NaN	NaN	6.4166E-05	1	33142	75.012	74.315	1	735000			21113	504	17807	18324	21113	21113		
VNPDTGYINYDQLEENAR	18	Unmodified	_VNPDTGYINYDQLEENAR_			0	0	0	P34896	P34896	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1055.98744	2109.96033	2.2251	0.0023497	-0.18174	-0.00019192	2.0434	0.0021578	1056.48863954204	11.367	0.053241	11.367	11.341	11.394	0	186	52	1.1997861197946	0.0338036309766956	1.1997861197946	483.688243116783	0	13.6277779917016						102	7	2	NaN	NaN	NaN	8.2479E-07	1	33465	75.969	71.152	1	19922			21114	953	17808	18325	21114	21114		
VNPTVFFDIAVDGEPLGR	18	Unmodified	_VNPTVFFDIAVDGEPLGR_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.338786	1944.99453	-0.63408	-0.00041173	1.2018	0.00078035	0.56768	0.00036862	649.67380100549	19.259	0.12414	19.259	19.188	19.312	0	642	37	0.894250814548268	0.0243755060720344	0.894250814548268	541.067457979651	0	14.7484272787893						415	15	4	NaN	NaN	NaN	5.9362E-05	1	30625	105.08	97.871	1	142590			21115	1417	17809	18326	21115	21115		
VNPTVFFDIAVDGEPLGR	18	Unmodified	_VNPTVFFDIAVDGEPLGR_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.338786	1944.99453	0.32933	0.00021384	0.88257	0.00057309	1.2119	0.00078693	649.673333468891	19.25	0.1862	19.25	19.162	19.348	0	570	124	0.942920803299286	0.0828974647988514	0.942920803299286	570.515290533206	0	50.1572041349602						1446	22	5	NaN	NaN	NaN	0.00067665	1	30626	101.43	98.343	1	707310			21116	1417	17809	18326	21116	21116		
VNPTVFFDIAVDGEPLGR	18	Unmodified	_VNPTVFFDIAVDGEPLGR_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.50454	1944.99453	1.4008	0.0013637	-0.11239	-0.00010941	1.2884	0.0012542	973.503864912521	18.825	0.21281	18.825	18.736	18.949	0	237	64	1.16593139812432	0.0418838012737479	1.16593139812432	470.300462132652	0	16.8946227253204						640	25	4	NaN	NaN	NaN	3.1747E-07	1	30627	85.742	80.908	1	134060			21117	1417	17809	18326	21117	21117		
VNPTVFFDIAVDGEPLGR	18	Unmodified	_VNPTVFFDIAVDGEPLGR_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.50454	1944.99453	1.6233	0.0015803	0.44853	0.00043665	2.0719	0.002017	974.00633903451	19.25	0.28378	19.25	19.135	19.419	0	237	103	1.16593139812432	0.0677793147011738	1.16593139812432	470.300460261801	0	27.3400673071098						2629	33	6	NaN	NaN	NaN	2.675E-26	1	30629	235.02	221.24	1	2662800			21118	1417	17809	18326	21118	21118		
VNPTVFFDIAVDGEPLGR	18	Acetyl (Protein N-term)	_(Acetyl (Protein N-term))VNPTVFFDIAVDGEPLGR_			1	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.509822	1987.00509	0.4811	0.00047845	1.0705	0.0010646	1.5516	0.0015431	995.012294400956	20.261	0.070945	20.261	20.235	20.306	0	96	109	1.2593374219024	0.0713441492576208	1.2593374219024	507.901447016065	0	28.7736995771449						564	9	5	NaN	NaN	NaN	4.4715E-19	1	31394	159.75	145.74	1	369830			21119	1417	17809	18327	21119	21119		
VNQAIWLLCTGAR	13	Unmodified	_VNQAIWLLCTGAR_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.400835	1500.78712	1.3251	0.00099571	-2.4615	-0.0018496	-1.1364	-0.00085389	751.399237789559	14.409	0.18621	14.409	14.338	14.524	0	447	79	1.02569221487577	0.0523045183704234	1.02569221487577	414.598735394734	0	21.142197295935						742	22	5	NaN	NaN	NaN	4.181E-11	1	18555	127.03	102.34	1	291600			21120	1090	17810	18328	21120	21120		
VNQIGSVTEAIQACK	15	Unmodified	_VNQIGSVTEAIQACK_			0	0	0	P09104	P09104	P09104	ENO2	Gamma-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.416879	1616.81921	2.5593	0.0020716	-1.1872	-0.00096095	1.3721	0.0011106	809.416443142319	10.126	0.15962	10.126	10.055	10.214	0	378	34	1.07192009927972	0.0220754584082121	1.07192009927972	433.00041645509	0	8.91734625613964						303	19	4	NaN	NaN	NaN	1.0295E-11	1	22110	144.51	132.56	1	82366			21121	596	17811	18329	21121	21121		
VNQIGSVTESLQACK	15	Unmodified	_VNQIGSVTESLQACK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.414337	1632.81412	2.0502	0.0016759	-8.3513	-0.0068265	-6.3011	-0.0051506	817.405997788801	8.7156	0.15096	8.7156	8.6357	8.7866	0	372	85	1.07593298845566	0.0561959942458385	1.07593298845566	434.585275085465	0	22.6983946770541						305	18	2	NaN	NaN	NaN	0.015558	1	22569	36.46	0	1	99876			21122	544	17812	18330	21122	21122		
VNQIGSVTESLQACK	15	Unmodified	_VNQIGSVTESLQACK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.414337	1632.81412	1.9664	0.0016073	-2.0967	-0.0017139	-0.13032	-0.00010653	817.411885788321	8.1213	0.097641	8.1213	8.068	8.1656	0	384	40	1.06790610341098	0.0260963753447068	1.06790610341098	431.343074563907	0	10.5407120908902						162	12	2	NaN	NaN	NaN	0.01616	1	22573	62.705	0	1	45887			21123	544	17812	18330	21123	21123		
VNQIGSVTESLQACK	15	Unmodified	_VNQIGSVTESLQACK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.414337	1632.81412	2.754	0.0022511	1.0896	0.00089065	3.8436	0.0031418	817.415598062395	9.177	0.49659	9.177	9.106	9.6026	0	372	94	1.07593298845566	0.0622212962677171	1.07593298845566	434.585240525205	0	25.1321014360832						2622	57	7	NaN	NaN	NaN	3.3935E-70	1	22575	328.32	0	1	4647800			21124	544	17812	18330	21124	21124		
VNQWTTNVVEQTLSQLTK	18	Unmodified	_VNQWTTNVVEQTLSQLTK_			0	0	0	P63172	P63172	P63172	DYNLT1	Dynein light chain Tctex-type 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.04984	2088.08513	0.8648	0.00090376	0.57283	0.00059864	1.4376	0.0015024	1045.55219033859	19.401	0.070982	19.401	19.375	19.446	0	105	37	1.25339330680955	0.0237846096492644	1.25339330680955	505.334344256102	0	9.5893125128398						294	9	5	NaN	NaN	NaN	1.3296E-14	1	33158	162	139.61	1	81568			21125	1430	17813	18331	21125	21125		
VNTAQCPLPLFTCLHVK	17	Unmodified	_VNTAQCPLPLFTCLHVK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	666.681501	1997.02267	0.9665	0.00064435	0.02311	1.5407E-05	0.98961	0.00065975	667.015958227741	14.586	0.21281	14.586	14.48	14.693	0	513	37	0.981336640919867	0.0242341119852805	0.981336640919867	593.649345615928	0	14.6601727906128						636	25	5	NaN	NaN	NaN	0.0033328	1	31583	59.67	59.024	1	205190			21126	1098	17814	18332	21126	21126		
VNTDLGNDLYFVK	13	Unmodified	_VNTDLGNDLYFVK_			0	0	0	Q8WVC0	Q8WVC0	Q8WVC0	LEO1	RNA polymerase-associated protein LEO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.382831	1496.75111	1.0266	0.00076928	0.10831	8.1166E-05	1.1349	0.00085045	749.383030891264	13.398	0.1597	13.398	13.336	13.496	0	432	37	1.035754240522	0.0241405316442127	1.035754240522	418.676248668629	0	9.75817122850646						313	19	4	NaN	NaN	NaN	9.5171E-05	1	18446	88.24	81.493	1	86743			21127	2378	17815	18333	21127	21127		
VNTFSALLLEPYKPPSAQ	18	Unmodified	_VNTFSALLLEPYKPPSAQ_			0	0	1	O43681	O43681	O43681	ASNA1	ATPase ASNA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.030391	1974.04623	-0.56369	-0.00055694	0.82335	0.0008135	0.25966	0.00025656	988.532567332159	16.847	0.11526	16.847	16.794	16.91	0	60	31	1.28308947459206	0.0197825394975926	1.28308947459206	517.504417226524	0	7.97882905026341						263	14	3	NaN	NaN	NaN	1.9826E-05	1	31188	90.156	72.058	1	55858			21128	219	17816	18334	21128	21128		
VNTFSALLLEPYKPPSAQ	18	Unmodified	_VNTFSALLLEPYKPPSAQ_			0	0	1	O43681	O43681	O43681	ASNA1	ATPase ASNA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	988.030391	1974.04623	0.79262	0.00078313	0.66875	0.00066075	1.4614	0.0014439	988.532405312441	16.839	0.29266	16.839	16.652	16.945	0	168	55	1.21171599086077	0.0357748946368504	1.21171599086077	488.717576435099	0	14.4289750535705						1096	34	5	NaN	NaN	NaN	0.002225	1	31189	59.67	42.911	1	325100			21129	219	17816	18334	21129	21129		
VNTHGIFTISTASMVEK	17	Unmodified	_VNTHGIFTISTASMVEK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	612.317105	1833.92948	-0.3072	-0.00018811	-0.97384	-0.0005963	-1.281	-0.00078441	612.316617118631	11.607	0.11536	11.607	11.571	11.687	0	648	28	0.890187667287968	0.0182879696480781	0.890187667287968	538.83983711331	0	11.0698978972889						238	14	4	NaN	NaN	NaN	0.010366	1	28083	48.363	47.482	1	54909			21130	2415	17817	18335	21130	21130		
VNTLIRPDGEK	11	Unmodified	_VNTLIRPDGEK_			0	0	1	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.56646	1240.67755	-0.8663	-0.00035914	1.1618	0.00048164	0.29551	0.00012251	414.566843679327	4.2283	0.24828	4.2283	4.1751	4.4233	0	798	43	0.788241307691771	0.0286443360512838	0.788241307691771	478.836918035988	0	17.4007191200733						507	29	3	NaN	NaN	NaN	0.035045	1	10647	56.202	38.732	1	227860			21131	1395	17818	18336	21131	21131		
VNTLIRPDGEK	11	Unmodified	_VNTLIRPDGEK_			0	0	1	P62750	P62750	P62750	RPL23A	60S ribosomal protein L23a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.346052	1240.67755	2.5747	0.0015998	-1.0616	-0.00065962	1.5131	0.00094017	621.345674186204	4.2283	0.26602	4.2283	4.1662	4.4322	0	576	52	0.938871150116794	0.0344196803127764	0.938871150116794	380.2305952798	0	13.9395225138607						646	31	4	NaN	NaN	NaN	1.7285E-05	1	10648	122.51	97.688	1	399450			21132	1395	17818	18336	21132	21132		
VNTLVAAANSLDNLCR	16	Unmodified	_VNTLVAAANSLDNLCR_			0	0	0	Q9Y4A5	Q9Y4A5	Q9Y4A5	TRRAP	Transformation/transcription domain-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.946335	1729.87812	1.7689	0.0015318	0.20248	0.00017534	1.9714	0.0017071	865.946608547419	14.515	0.062065	14.515	14.489	14.551	0	171	22	1.20972836110953	0.013915318381349	1.20972836110953	488.396444254797	0	5.61794881942842						105	8	3	NaN	NaN	NaN	0.00025218	1	25322	73.891	72.928	1	21076			21133	3407	17819	18337	21133	21133		
VNVAGLVLAGSADFK	15	Unmodified	_VNVAGLVLAGSADFK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.909016	1459.80348	1.3275	0.00097025	1.6513	0.0012069	2.9787	0.0021772	730.910272641035	16.209	0.20393	16.209	16.165	16.369	0	297	76	1.12600091227925	0.0500265726171247	1.12600091227925	455.261598278976	0	20.2266065308864						699	24	4	NaN	NaN	NaN	0.00012018	1	17268	91.245	72.737	1	227320			21134	1392	17820	18338	21134	21134		
VNVDIINFGEEEVNTEK	17	Unmodified	_VNVDIINFGEEEVNTEK_			0	0	0	P55036;A2A3N6	P55036	P55036	PSMD4;PIPSL	26S proteasome non-ATPase regulatory subunit 4;Putative PIP5K1A and PSMD4-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.978552	1947.94255	1.1548	0.0011259	1.7459	0.0017022	2.9007	0.0028281	974.980292780594	14.808	0.15077	14.808	14.737	14.888	0	237	46	1.16593139812432	0.0299087706952383	1.16593139812432	470.295413425329	0	12.064138337632						512	18	3	NaN	NaN	NaN	1.2142E-06	1	30679	125.14	101.33	1	233890			21135	1262	17821	18339	21135	21135		
VNVHGIFSVSSASLVEVHK	19	Unmodified	_VNVHGIFSVSSASLVEVHK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.365335	2008.07417	0.64126	0.00042988	1.8522	0.0012417	2.4935	0.0016715	670.366691049175	12.094	0.20397	12.094	12.041	12.245	0	489	28	0.997481546940468	0.0181542333061034	0.997481546940468	603.3931284424	0	10.9817967687143						314	24	3	NaN	NaN	NaN	0.00075421	1	31785	78.888	67.679	1	113060			21136	955	17822	18340	21136	21136		
VNVHVLGVLLGQK	13	Unmodified	_VNVHVLGVLLGQK_			0	0	0	Q6PGP7	Q6PGP7	Q6PGP7	TTC37	Tetratricopeptide repeat protein 37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.424636	1374.83472	1.4373	0.00098948	1.4312	0.0009853	2.8686	0.0019748	688.425267368662	13.903	0.070942	13.903	13.877	13.948	0	435	25	1.03374239103424	0.0160959081053016	1.03374239103424	418.202313303365	0	6.5116281026464						124	9	3	NaN	NaN	NaN	0.039979	1	14656	40.386	38.884	1	25013			21137	2072	17823	18341	21137	21137		
VNVPGSQAQLK	11	Unmodified	_VNVPGSQAQLK_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.822212	1139.62987	0.98692	0.00056335	0.50088	0.00028591	1.4878	0.00084927	570.822399329461	5.4608	0.097519	5.4608	5.4076	5.5051	0	600	31	0.922661313351899	0.0202735302015807	0.922661313351899	374.030198730258	0	8.21852224703497						167	12	3	NaN	NaN	NaN	0.0063979	1	7788	49.16	38.458	1	46934			21138	1532	17824	18342	21138	21138		
VNVPVIGGHAGK	12	Unmodified	_VNVPVIGGHAGK_			0	0	0	P40926	P40926	P40926	MDH2	Malate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.332747	1146.65094	1.7466	0.0010031	1.0318	0.00059258	2.7784	0.0015957	574.33350206904	6.3299	0.57639	6.3299	6.0461	6.6225	0	552	61	0.955063035883597	0.0404741262657745	0.955063035883597	387.136928282619	0	16.4062772076173						1756	66	5	NaN	NaN	NaN	0.0033607	1	7982	47.561	43.021	1	1321300			21139	1023	17825	18343	21139	21139		
VNYDTTESK	9	Unmodified	_VNYDTTESK_			0	0	0	P08621	P08621	P08621	SNRNP70	U1 small nuclear ribonucleoprotein 70 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.745836	1055.47712	1.0177	0.0005381	-0.26889	-0.00014218	0.74879	0.00039592	528.74554386338	2.3306	0.133	2.3306	2.3128	2.4459	0	717	19	0.84338031290707	0.0122284278950673	0.84338031290707	342.216767903069	0	4.96190509399139						102	16	2	NaN	NaN	NaN	0.012349	1	5592	52.591	43.198	1	18619			21140	586	17826	18344	21140	21140		
VNYGAYINDFK	11	Unmodified	_VNYGAYINDFK_			0	0	0	P16278	P16278	P16278	GLB1	Beta-galactosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.319502	1302.62445	0.5714	0.00037274	0.086162	5.6205E-05	0.65756	0.00042894	652.319232376049	11.864	0.1951	11.864	11.793	11.988	0	486	49	0.999498404980629	0.0322808922550346	0.999498404980629	404.571926549114	0	13.0664968600893						345	23	3	NaN	NaN	NaN	0.018505	1	12422	56.202	44.847	1	76141			21141	725	17827	18345	21141	21141		
VPAATSAIITNDGIGINPAQTAGNVFLK	28	Unmodified	_VPAATSAIITNDGIGINPAQTAGNVFLK_			0	0	0	P61960	P61960	P61960	UFM1	Ubiquitin-fold modifier 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.499258	2752.47594	0.77578	0.00071256	1.1212	0.0010298	1.897	0.0017424	918.834411964212	17.344	0.11528	17.344	17.3	17.415	0	441	40	1.02971785871157	0.0261540485744427	1.02971785871157	621.736448291111	0	15.7916317868408						383	14	5	NaN	NaN	NaN	0.00028087	1	37769	39.557	38.771	1	84035			21142	1355	17828	18346	21142	21142		
VPADLGAEAGLQQLLGALR	19	Unmodified	_VPADLGAEAGLQQLLGALR_			0	0	0	P35270	P35270	P35270	SPR	Sepiapterin reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	631.35818	1891.05271	-0.022134	-1.3975E-05	-0.175	-0.00011049	-0.19713	-0.00012446	631.692465020383	19.933	0.044346	19.933	19.924	19.969	0	591	31	0.928742107665821	0.0202622968311691	0.928742107665821	562.049885476561	0	12.262200151636						109	6	4	NaN	NaN	NaN	1.3659E-10	1	29404	154.94	130.25	1	45224			21143	969	17829	18347	21143	21143		
VPADLGAEAGLQQLLGALR	19	Unmodified	_VPADLGAEAGLQQLLGALR_			0	0	0	P35270	P35270	P35270	SPR	Sepiapterin reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	946.533632	1891.05271	1.2781	0.0012098	1.0867	0.0010286	2.3649	0.0022384	947.036643839789	19.933	0.053212	19.933	19.924	19.978	0	231	52	1.16991841121525	0.0338826381557076	1.16991841121525	472.004048759864	0	13.669963852904						231	7	5	NaN	NaN	NaN	1.4507E-19	1	29405	124.24	115.86	1	108510			21144	969	17829	18347	21144	21144		
VPADTEVVCAPPTAYIDFAR	20	Unmodified	_VPADTEVVCAPPTAYIDFAR_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.361261	2191.06195	1.2115	0.00088606	0.30476	0.00022289	1.5163	0.0011089	731.695959192303	15.296	0.27497	15.296	15.198	15.473	0	441	118	1.02971785871157	0.0786358665225724	1.02971785871157	622.536468838859	0	47.5408814704828						1920	32	6	NaN	NaN	NaN	0.00087758	1	34574	92.747	87.132	1	776010			21145	1303	17830	18348	21145	21145		
VPADTEVVCAPPTAYIDFAR	20	Unmodified	_VPADTEVVCAPPTAYIDFAR_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.53825	2191.06195	1.4808	0.0016238	0.2981	0.00032687	1.7789	0.0019507	1097.04087312557	15.313	0.34591	15.313	15.189	15.535	0	135	166	1.23356193185193	0.109125279508824	1.23356193185193	497.184418661828	0	43.9827034646337						4951	40	6	NaN	NaN	NaN	2.2468E-16	1	34575	150.81	145.73	1	2960300			21146	1303	17830	18348	21146	21146		
VPAEGLEEVLTTPETVLTGHTEK	23	Unmodified	_VPAEGLEEVLTTPETVLTGHTEK_			0	0	0	P57737	P57737	P57737	CORO7	Coronin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	817.426876	2449.2588	0.80273	0.00065617	0.78816	0.00064426	1.5909	0.0013004	817.427348031365	17.211	0.19507	17.211	17.114	17.309	0	366	34	1.07994477139643	0.0220663300779218	1.07994477139643	652.468692203088	0	13.3317831698434						488	23	4	NaN	NaN	NaN	0.00028067	1	36576	63.025	58.867	1	100100			21147	1296	17831	18349	21147	21147		
VPAGNWVLIEGVDQPIVK	18	Unmodified	_VPAGNWVLIEGVDQPIVK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.363043	1933.0673	0.30502	0.00019685	-4.7543	-0.0030682	-4.4492	-0.0028714	645.694319151684	16.44	0.15074	16.44	16.395	16.546	0	579	37	0.936845902828289	0.024301288635538	0.936845902828289	566.864439778932	0	14.704164608825						499	18	4	NaN	NaN	NaN	8.221E-05	1	30392	97.594	97.458	1	150060			21148	1796	17832	18350	21148	21148		
VPAGNWVLIEGVDQPIVK	18	Unmodified	_VPAGNWVLIEGVDQPIVK_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.540926	1933.0673	1.5282	0.0014786	-0.64089	-0.00062009	0.88731	0.0008585	968.041906022793	16.44	0.22166	16.44	16.386	16.608	0	177	46	1.2057522832638	0.0298349197406598	1.2057522832638	486.384230084715	0	12.0350047593691						846	26	5	NaN	NaN	NaN	0.00010625	1	30393	67.887	65.172	1	395530			21149	1796	17832	18350	21149	21149		
VPAINVNDSVTK	12	Unmodified	_VPAINVNDSVTK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.845884	1255.67722	2.1774	0.0013692	-0.41899	-0.00026348	1.7584	0.0011057	628.846842201649	7.3674	0.34579	7.3674	7.2698	7.6156	0	552	61	0.955063035883597	0.0404517201034513	0.955063035883597	386.737244448317	0	16.3802662004711						1036	40	5	NaN	NaN	NaN	1.0214E-08	1	11091	151.66	105.22	1	1225100			21150	822	17833	18351	21150	21150		
VPAIYGVDTR	10	Unmodified	_VPAIYGVDTR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.798206	1089.58186	0.3076	0.00016789	0.26141	0.00014268	0.56901	0.00031056	545.798667469722	8.1213	0.053207	8.1213	8.0858	8.139	0	618	13	0.910492137470517	0.00811840917474071	0.910492137470517	369.299628450685	0	3.2928625832746						45	7	3	NaN	NaN	NaN	0.00058548	1	6455	63.397	32.805	1	12006			21151	922	17834	18352	21151	21151		
VPAIYGVDTR	10	Unmodified	_VPAIYGVDTR_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	545.798206	1089.58186	1.4794	0.00080748	0.31084	0.00016966	1.7903	0.00097713	545.798325748532	8.1833	0.44347	8.1833	8.1036	8.547	0	612	94	0.914549654013882	0.0629395582184972	0.914549654013882	370.945374834833	0	25.5285625147093						1320	51	5	NaN	NaN	NaN	4.8198E-10	1	6456	158.61	120.89	1	979810			21152	922	17834	18352	21152	21152		
VPALLENQVEER	12	Unmodified	_VPALLENQVEER_			0	0	0	Q9BRS2	Q9BRS2	Q9BRS2	RIOK1	Serine/threonine-protein kinase RIO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.875173	1395.73579	1.1026	0.00077055	2.0507	0.0014332	3.1533	0.0022037	699.37865814092	9.4874	0.17734	9.4874	9.4164	9.5938	0	438	37	1.03173026378327	0.0241505321586708	1.03173026378327	417.326069234795	0	9.76868374370349						288	21	3	NaN	NaN	NaN	0.006807	1	15328	54.584	50.056	1	61112			21153	2713	17835	18353	21153	21153		
VPAPSIEDICHVLSTVCK	18	Unmodified	_VPAPSIEDICHVLSTVCK_			0	0	0	P40938	P40938	P40938	RFC3	Replication factor C subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	675.676304	2024.00708	-0.70362	-0.00047542	-1.5834	-0.0010699	-2.287	-0.0015453	676.010011050809	16.865	0.15078	16.865	16.794	16.945	0	630	49	0.902373728295776	0.0324826533406289	0.902373728295776	545.831371676987	0	19.6482351742537						675	18	5	NaN	NaN	NaN	0.00045923	1	32045	52.201	51.107	1	213350			21154	1025	17836	18354	21154	21154		
VPAPVTMDSFFFGCELSGHTR	21	Unmodified	_VPAPVTMDSFFFGCELSGHTR_			0	0	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.701401	2354.08237	0.44249	0.00034766	-0.27312	-0.00021459	0.16937	0.00013308	786.035805075843	16.865	0.21287	16.865	16.803	17.016	0	453	37	1.02166545906632	0.0241672134976301	1.02166545906632	617.398901446645	0	14.6044000333526						740	25	6	NaN	NaN	NaN	3.7011E-29	1	36085	240.82	230.17	1	351690			21155	346	17837	18355	21155	21155		
VPAPVTMDSFFFGCELSGHTR	21	Oxidation (M)	_VPAPVTM(Oxidation (M))DSFFFGCELSGHTR_	VPAPVTM(1)DSFFFGCELSGHTR	VPAPVTM(86)DSFFFGCELSGHTR	0	1	0	O75607	O75607	O75607	NPM3	Nucleoplasmin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	791.033039	2370.07729	1.6126	0.0012757	0.12654	0.0001001	1.7392	0.0013758	791.368123380264	14.453	0.12415	14.453	14.4	14.524	0	426	37	1.03977710643793	0.0241405316442127	1.03977710643793	628.319011806285	0	14.5876985492906						315	15	5	NaN	NaN	NaN	1.4856E-06	1	36208	86.135	79.748	1	57927			21156	346	17837	18356	21156	21156	56	
VPATLQVLQTLPEENYQVLR	20	Unmodified	_VPATLQVLQTLPEENYQVLR_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.093392	2310.25835	0.59913	0.00046198	-0.093334	-7.1969E-05	0.50579	0.00039001	771.427903192838	17.406	0.14188	17.406	17.326	17.468	0	447	31	1.02569221487577	0.0201310011285361	1.02569221487577	619.9012489162	0	12.1666446917746						275	17	4	NaN	NaN	NaN	0.0053779	1	35721	52.201	50.469	1	57694			21157	1573	17838	18357	21157	21157		
VPATLQVLQTLPEENYQVLR	20	Unmodified	_VPATLQVLQTLPEENYQVLR_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1156.13645	2310.25835	-0.51979	-0.00060095	1.3821	0.0015979	0.86229	0.00099693	1156.63941187776	17.406	0.079801	17.406	17.362	17.442	0	66	34	1.27913350869533	0.0217652629836462	1.27913350869533	515.384314794546	0	8.76958900137879						208	10	3	NaN	NaN	NaN	2.9305E-05	1	35722	39.587	37.852	1	42052			21158	1573	17838	18357	21158	21158		
VPCNTVFGSQHQMDVAFLEK	20	Unmodified	_VPCNTVFGSQHQMDVAFLEK_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	769.701401	2306.08237	0.93159	0.00071704	0.22796	0.00017546	1.1596	0.00089251	770.035578667002	13.194	0.14191	13.194	13.141	13.283	0	543	40	0.961130371139249	0.0262917911447993	0.961130371139249	580.88806149332	0	15.8902351334365						423	17	4	NaN	NaN	NaN	0.00092354	1	35679	22.456	22.456	1	93813			21159	2069	17839	18358	21159	21159		
VPDGKPENEFAFNAEFK	17	Unmodified	_VPDGKPENEFAFNAEFK_			0	0	1	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	646.979257	1937.91594	1.419	0.00091805	-0.2571	-0.00016634	1.1619	0.00075172	647.313572132369	10.968	0.5942	10.968	10.853	11.447	0	636	97	0.898312834727904	0.0649743767545046	0.898312834727904	543.539243950028	0	39.3138361737475						2642	68	4	NaN	NaN	NaN	0.00010564	1	30465	127.07	123.09	1	1448500			21160	1822	17840	18359	21160	21160		
VPDGMVGFIIGR	12	Unmodified	_VPDGMVGFIIGR_			0	0	0	Q96AE4	Q96AE4	Q96AE4	FUBP1	Far upstream element-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.842091	1259.66963	0.95466	0.00060224	-2.3532	-0.0014845	-1.3986	-0.00088227	630.841476848319	15.739	0.36355	15.739	15.659	16.023	0	564	55	0.946969335010767	0.0364367993770142	0.946969335010767	383.446620714156	0	14.7539810152321						1506	42	5	NaN	NaN	NaN	0.00029225	1	11209	94.804	80.809	1	952350			21161	2473	17841	18360	21161	21161		
VPDGMVGLIIGR	12	Unmodified	_VPDGMVGLIIGR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.849916	1225.68528	1.0011	0.00061451	-1.1511	-0.00070659	-0.15001	-9.2084E-05	613.8494390452	15.437	0.21292	15.437	15.384	15.597	0	564	55	0.946969335010767	0.0364317543257808	0.946969335010767	383.561874707052	0	14.7563722197027						728	25	4	NaN	NaN	NaN	0.0005659	1	10180	92.732	82.644	1	258130			21162	2446	17842	18361	21162	21162		
VPDQGAAGVR	10	Unmodified	_VPDQGAAGVR_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.259248	968.503943	0.22145	0.00010746	1.0242	0.00049701	1.2457	0.00060447	485.260077560363	2.8094	0.1064	2.8094	2.7651	2.8715	0	756	25	0.816857749704129	0.0163363337922245	0.816857749704129	331.837806766498	0	6.6364225327859						87	13	2	NaN	NaN	NaN	0.040564	1	3598	29.31	19.916	1	16201			21163	1611	17843	18362	21163	21163		
VPDVLVADPPIAR	13	Unmodified	_VPDVLVADPPIAR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.393002	1360.77145	1.6357	0.0011146	0.30867	0.00021033	1.9444	0.0013249	681.393166834063	12.352	0.20396	12.352	12.236	12.44	0	408	73	1.0518390438467	0.0482610995013308	1.0518390438467	425.567129542335	0	19.5261220844466						877	24	4	NaN	NaN	NaN	0.0012253	1	14239	43.306	33.791	1	272580			21164	1771	17844	18363	21164	21164		
VPEDPTQCFLLFANQTEK	18	Unmodified	_VPEDPTQCFLLFANQTEK_			0	0	0	Q9UHQ9	Q9UHQ9	Q9UHQ9	CYB5R1	NADH-cytochrome b5 reductase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1069.01715	2136.01976	1.2128	0.0012965	-2.4279	-0.0025955	-1.2151	-0.001299	1069.01520496451	16.59	0.30149	16.59	16.377	16.679	0	165	52	1.21370334790578	0.0337804461585791	1.21370334790578	489.259880487211	0	13.6173448634452						416	35	2	NaN	NaN	NaN	0.072809	1	33827	23.432	22.161	1	200250			21165	3220	17845	18364	21165	21165		
VPEESVLPLVQK	12	Unmodified	_VPEESVLPLVQK_			0	0	0	Q9UKV3	Q9UKV3	Q9UKV3	ACIN1	Apoptotic chromatin condensation inducer in the nucleus	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.387385	1336.76022	0.81657	0.0005466	0.88106	0.00058977	1.6976	0.0011364	669.38794183957	11.589	0.204	11.589	11.509	11.713	0	483	46	1.00151498427745	0.0302528786941803	1.00151498427745	405.279528899859	0	12.2423254943985						404	24	3	NaN	NaN	NaN	0.00035937	1	13511	66.664	52.866	1	104410			21166	3269	17846	18365	21166	21166		
VPEFQFLIGDEAATHLK	17	Unmodified	_VPEFQFLIGDEAATHLK_			0	0	0	P34949	P34949	P34949	MPI	Mannose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.003514	1913.98871	0.77645	0.00049615	-2.4942	-0.0015938	-1.7178	-0.0010977	639.335903486487	15.5	0.1154	15.5	15.455	15.571	0	609	40	0.916577990479294	0.0263610708448411	0.916577990479294	554.640132138147	0	15.9516243773649						288	14	5	NaN	NaN	NaN	0.01305	1	29933	43.518	42.78	1	79441			21167	956	17847	18366	21167	21167		
VPEGVAGAPNEAALLALMER	20	Unmodified	_VPEGVAGAPNEAALLALMER_			0	0	0	A0AV96	A0AV96	A0AV96	RBM47	RNA-binding protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1004.53023	2007.04591	1.047	0.0010518	0.22811	0.00022914	1.2751	0.0012809	1005.03246972286	17.592	0.15958	17.592	17.539	17.699	0	174	37	1.20774045859593	0.0238597451657223	1.20774045859593	487.058215584973	0	9.62217074208064						373	19	4	NaN	NaN	NaN	0.038828	1	31760	36.059	32.419	1	78016			21168	2	17848	18367	21168	21168		
VPEIEVTVEGPNNNNPQTSAVR	22	Unmodified	_VPEIEVTVEGPNNNNPQTSAVR_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.731182	2363.17172	1.1362	0.00089618	1.8559	0.0014638	2.9921	0.00236	789.066844232445	10.587	0.079809	10.587	10.543	10.622	0	576	19	0.938871150116794	0.0121506427444233	0.938871150116794	567.352970593834	0	7.34254455983171						123	10	3	NaN	NaN	NaN	4.5268E-08	1	36157	102.55	97.222	1	22293			21169	1459	17849	18368	21169	21169		
VPEILQLSDALR	12	Unmodified	_VPEILQLSDALR_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.390459	1352.76637	1.0656	0.00072181	0.01385	9.382E-06	1.0794	0.00073119	677.390368371159	16.156	0.27488	16.156	16.032	16.307	0	447	43	1.02569221487577	0.0281872971172881	1.02569221487577	415.012990460962	0	11.4050728863864						514	32	4	NaN	NaN	NaN	0.00022903	1	13987	94.791	78.139	1	149090			21170	1137	17850	18369	21170	21170		
VPELFANR	8	Unmodified	_VPELFANR_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.261259	944.507966	-0.5046	-0.00023881	4.2651	0.0020185	3.7605	0.0017797	473.263301030622	8.7422	0.31957	8.7422	8.6446	8.9642	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	335.274244646947	0	6.63509003817222						585	37	5	NaN	NaN	NaN	2.0503E-05	1	3150	131.3	101.99	1	498170			21171	758	17851	18370	21171	21171		
VPEPGVPTETIK	12	Unmodified	_VPEPGVPTETIK_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.850635	1265.68672	1.5888	0.0010071	0.8149	0.00051652	2.4037	0.0015236	633.851266111511	7.6245	0.12413	7.6245	7.5624	7.6865	0	534	28	0.967195187796614	0.0181919339867516	0.967195187796614	391.616266380814	0	7.36589403672258						222	15	2	NaN	NaN	NaN	0.0074193	1	11387	56.202	40.62	1	120020			21172	1500	17852	18371	21172	21172		
VPEPNENVGDAVQTK	15	Unmodified	_VPEPNENVGDAVQTK_			0	0	0	Q7Z3K3	Q7Z3K3	Q7Z3K3	POGZ	Pogo transposable element with ZNF domain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.896834	1595.77911	2.3752	0.0018976	-1.6599	-0.0013261	0.71539	0.00057152	798.895314269475	6.1347	0.097521	6.1347	6.0904	6.1879	0	399	31	1.0578662689527	0.020089366798685	1.0578662689527	427.371252474317	0	8.11597656731209						205	12	3	NaN	NaN	NaN	0.0027133	1	21448	45.654	44.504	1	52981			21173	2132	17853	18372	21173	21173		
VPEVDVR	7	Unmodified	_VPEVDVR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	407.226885	812.439217	-1.2202	-0.00049691	-0.033576	-1.3673E-05	-1.2538	-0.00051058	407.226617625312	4.8844	0.18621	4.8844	4.8401	5.0263	0	807	25	0.782101955086014	0.0163750277383129	0.782101955086014	318.571572977901	0	6.66999783113619						217	22	2	NaN	NaN	NaN	0.041846	1	1121	46.835	34.283	1	73695			21174	1584	17854	18373	21174	21174		
VPEVPTAPATDAAPK	15	Unmodified	_VPEVPTAPATDAAPK_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.390656	1462.76676	1.6789	0.0012296	-0.54993	-0.00040276	1.129	0.00082685	732.891453486549	7.4383	0.24825	7.4383	7.3408	7.589	0	492	88	0.995464410099171	0.0584404655180625	0.995464410099171	402.475791232505	0	23.628039697607						771	29	4	NaN	NaN	NaN	0.00010753	1	17357	74.524	68.658	1	253850			21175	3215	17855	18374	21175	21175		
VPEWCLDDWHPSEK	14	Unmodified	_VPEWCLDDWHPSEK_			0	0	0	Q9Y6M9	Q9Y6M9	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	599.934883	1796.78282	-1.2324	-0.00073939	-0.3479	-0.00020872	-1.5803	-0.0009481	600.268719133921	11.908	0.23943	11.908	11.846	12.086	0	702	31	0.853568545818287	0.0203693921717962	0.853568545818287	516.753983703559	0	12.3317155979604						623	28	4	NaN	NaN	NaN	8.2438E-06	1	27125	108.24	102.22	1	192950			21176	3472	17856	18375	21176	21176		
VPEWVDTVK	9	Unmodified	_VPEWVDTVK_			0	0	0	P39019	P39019	P39019	RPS19	40S ribosomal protein S19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.787307	1071.56006	0.59152	0.00031752	1.3227	0.00071003	1.9143	0.0010276	536.787906696346	9.3189	0.38134	9.3189	9.2036	9.5849	0	660	85	0.882057989648486	0.0569235916522299	0.882057989648486	357.84173360283	0	23.0933078763349						1663	44	6	NaN	NaN	NaN	0.00038191	1	5994	93.467	79.82	1	2291300			21177	1009	17857	18376	21177	21177		
VPFCPMVGSEVYSTEIK	17	Unmodified	_VPFCPMVGSEVYSTEIK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.968087	1941.92162	2.3313	0.0022659	-0.070951	-6.8962E-05	2.2603	0.002197	972.469760145268	14.099	0.21281	14.099	14.028	14.24	0	207	76	1.18585551256002	0.0498137386052175	1.18585551256002	478.342592501569	0	20.0935380526886						1171	25	7	NaN	NaN	NaN	2.8612E-07	1	30549	82.437	77.355	1	471390			21178	3331	17858	18377	21178	21178		
VPFIHVGNQVVSELGPIVQFVK	22	Unmodified	_VPFIHVGNQVVSELGPIVQFVK_			0	0	0	O75431	O75431	O75431	MTX2	Metaxin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	802.789644	2405.3471	-0.24832	-0.00019934	-0.053773	-4.3169E-05	-0.30209	-0.00024251	803.123938212662	19.295	0.2305	19.295	19.135	19.366	0	555	28	0.953040030838688	0.0182070471487186	0.953040030838688	575.856122749919	0	11.0012583296837						422	27	4	NaN	NaN	NaN	5.6496E-06	1	36372	52.662	49.088	1	78482			21179	333	17859	18378	21179	21179		
VPFLDHR	7	Unmodified	_VPFLDHR_			0	0	0	P08243	P08243	P08243	ASNS	Asparagine synthetase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	442.24287	882.471186	-1.5079	-0.00066688	0.3256	0.00014399	-1.1823	-0.00052288	442.243076799682	6.4806	0.53206	6.4806	6.1614	6.6934	0	807	58	0.782101955086014	0.0388663471360342	0.782101955086014	318.15192674722	0	15.8104747680827						712	61	3	NaN	NaN	NaN	0.0077298	1	2042	88.35	34.294	1	271840			21180	581	17860	18379	21180	21180		
VPFLPGDSDLDQLTR	15	Unmodified	_VPFLPGDSDLDQLTR_			0	0	0	P50613	P50613	P50613	CDK7	Cyclin-dependent kinase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.930677	1671.8468	2.6347	0.0022051	-2.8396	-0.0023766	-0.20488	-0.00017147	836.929010018752	15.526	0.1596	15.526	15.464	15.624	0	333	73	1.10198982404297	0.0480618941023994	1.10198982404297	445.022557422327	0	19.4090966734524						538	19	3	NaN	NaN	NaN	0.0019087	1	23667	37.504	29.947	1	122380			21181	1170	17861	18380	21181	21181		
VPFLVLECPNLK	12	Unmodified	_VPFLVLECPNLK_			0	0	0	Q9NRP0	Q9NRP0	Q9NRP0	OSTC	Oligosaccharyltransferase complex subunit OSTC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.899605	1427.78466	1.2084	0.00086387	1.4278	0.0010207	2.6361	0.0018846	714.900713448049	15.695	0.22167	15.695	15.597	15.819	1.7764E-15	429	73	1.03776581230406	0.0482544393835054	1.03776581230406	419.674954920866	0	19.5142096924954						893	26	5	NaN	NaN	NaN	3.7634E-05	1	16332	107.08	95.121	1	332800			21182	3023	17862	18381	21182	21182		
VPFPLTLR	8	Unmodified	_VPFPLTLR_			0	0	0	Q9P0I2	Q9P0I2	Q9P0I2	EMC3	ER membrane protein complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.792195	941.569838	-0.5211	-0.00024585	-1.8768	-0.00088544	-2.3979	-0.0011313	471.791353706141	13.575	0.16848	13.575	13.513	13.682	0	726	25	0.837263974740672	0.0163136366798808	0.837263974740672	340.263743962877	0	6.62985541216636						290	20	3	NaN	NaN	NaN	0.040891	1	3095	49.325	38.497	1	75438			21183	3144	17863	18382	21183	21183		
VPFSLLR	7	Unmodified	_VPFSLLR_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	416.257988	830.501424	-2.2876	-0.00095224	-0.94631	-0.00039391	-3.2339	-0.0013462	416.257681724406	11.713	0.23057	11.713	11.651	11.882	0	777	40	0.802556497112065	0.0265742584315366	0.802556497112065	326.78533436211	0	10.8205191263465						576	27	4	NaN	NaN	NaN	0.0072637	1	1326	64.547	38.068	1	317250			21184	516	17864	18383	21184	21184		
VPGLPMSDQYVK	12	Unmodified	_VPGLPMSDQYVK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	667.344663	1332.67477	1.466	0.00097829	1.3851	0.00092437	2.8511	0.0019027	667.345371232849	10.622	0.1862	10.622	10.551	10.738	0	456	52	1.01965166402748	0.0342534486123975	1.01965166402748	412.631775871995	0	13.8616567101417						420	22	3	NaN	NaN	NaN	0.0057741	1	13375	44.598	32.64	1	108570			21185	108	17865	18384	21185	21185		
VPGLPTPIENMILR	14	Unmodified	_VPGLPTPIENMILR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.442169	1548.86978	1.5059	0.0011678	-1.4796	-0.0011473	0.026335	2.0421E-05	775.442255615052	17.832	0.25711	17.832	17.69	17.947	0	390	61	1.06389100039157	0.0401787479336657	1.06389100039157	429.917190684366	0	16.2361881344041						819	30	5	NaN	NaN	NaN	0.00010485	1	20017	94.791	84.541	1	352680			21186	2064	17866	18385	21186	21186		
VPGLQNEQK	9	Unmodified	_VPGLQNEQK_			0	0	0	Q8WWM7	Q8WWM7	Q8WWM7	ATXN2L	Ataxin-2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.774731	1011.53491	1.0104	0.00051206	1.9116	0.00096874	2.922	0.0014808	506.775613553257	3.5455	0.25726	3.5455	3.4479	3.7051	0	678	31	0.869855008346864	0.0203467753386566	0.869855008346864	353.156741261421	0	8.26068805125846						248	30	3	NaN	NaN	NaN	0.0015957	1	4549	67.507	51.05	1	51899			21187	2391	17867	18386	21187	21187		
VPGLYVIDSIVR	12	Unmodified	_VPGLYVIDSIVR_			0	0	0	O95104;Q9UPN6	O95104	O95104	SCAF4;SCAF8	Splicing factor, arginine/serine-rich 15;Protein SCAF8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.890095	1329.76564	-0.18348	-0.00012218	-0.41552	-0.00027669	-0.599	-0.00039887	665.889826774331	16.918	0.21287	16.918	16.803	17.016	0	489	43	0.997481546940468	0.0282457786988155	0.997481546940468	403.66906215784	0	11.4307347662134						531	25	3	NaN	NaN	NaN	0.005627	1	13298	64.064	46.595	1	143090			21188	404	17868	18387	21188	21188		
VPHSLDLSSPNMANTVNAALK	21	Unmodified	_VPHSLDLSSPNMANTVNAALK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	727.044044	2178.1103	0.49479	0.00035974	-0.25764	-0.00018732	0.23715	0.00017242	727.37841391839	12.618	0.097544	12.618	12.573	12.671	0	585	40	0.932794566565362	0.0263391634913087	0.932794566565362	563.960669152562	0	15.9244626843957						404	12	5	NaN	NaN	NaN	6.234E-08	1	34423	104	100.15	1	101710			21189	2149	17869	18388	21189	21189		
VPIIGVGGVSSGQDALEK	18	Unmodified	_VPIIGVGGVSSGQDALEK_			0	0	0	Q02127	Q02127	Q02127	DHODH	Dihydroorotate dehydrogenase (quinone), mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.472709	1724.93086	1.7613	0.0015208	-4.7926	-0.0041383	-3.0313	-0.0026174	863.470917499846	12.032	0.15075	12.032	11.953	12.103	0	321	34	1.10999792833052	0.02201470966097	1.10999792833052	448.143104231979	0	8.88807093637666						158	18	2	NaN	NaN	NaN	0.0022868	1	25194	49.487	43.871	1	80180			21190	1525	17870	18389	21190	21190		
VPILVAQEGESSQQLNDSSVIISALK	26	Unmodified	_VPILVAQEGESSQQLNDSSVIISALK_			0	0	0	Q9H7Z7	Q9H7Z7	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	909.15879	2724.45454	0.35112	0.00031922	1.3699	0.0012455	1.721	0.0015647	909.493579229215	17.291	0.053217	17.291	17.255	17.309	0	270	28	1.14398322290989	0.0179699474696835	1.14398322290989	690.764784116758	0	10.8506896219257						104	7	3	NaN	NaN	NaN	0.0574	1	37675	6.2538	6.1045	1	18260			21191	2919	17871	18390	21191	21191		
VPINESFISMVIGR	14	Unmodified	_VPINESFISMVIGR_			0	0	0	Q12768	Q12768	Q12768	KIAA0196	WASH complex subunit strumpellin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	781.423976	1560.8334	0.9604	0.00075048	-3.6122	-0.0028226	-2.6518	-0.0020722	781.419775578096	18.532	0.12414	18.532	18.497	18.621	0	414	34	1.04781950764076	0.0221120284306979	1.04781950764076	423.393970732891	0	8.93483987458029						244	15	4	NaN	NaN	NaN	0.0041467	1	20368	66.953	62.426	1	64560			21192	1592	17872	18391	21192	21192		
VPIWDQDIQFLPGSQK	16	Unmodified	_VPIWDQDIQFLPGSQK_			0	0	0	Q6RFH5	Q6RFH5	Q6RFH5	WDR74	WD repeat-containing protein 74	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.328109	1869.9625	-1.0321	-0.00064434	-0.78117	-0.0004877	-1.8132	-0.001132	624.327544351897	16.803	0.062032	16.803	16.768	16.83	0	642	19	0.894250814548268	0.0121860610078076	0.894250814548268	541.221084607284	0	7.37528336394951						119	8	3	NaN	NaN	NaN	0.054802	1	28935	16.131	14.657	1	25866			21193	2081	17873	18392	21193	21193		
VPIWDQDIQFLPGSQK	16	Unmodified	_VPIWDQDIQFLPGSQK_			0	0	0	Q6RFH5	Q6RFH5	Q6RFH5	WDR74	WD repeat-containing protein 74	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.988526	1869.9625	0.79042	0.00073982	0.98026	0.00091751	1.7707	0.0016573	936.490958557035	16.794	0.20393	16.794	16.679	16.883	0	258	58	1.15196821829984	0.0379157076818644	1.15196821829984	464.800211994015	0	15.2983638684437						664	24	5	NaN	NaN	NaN	0.00088342	1	28938	55.782	40.807	1	216930			21194	2081	17873	18392	21194	21194		
VPLAPITDPQQLQLSPLK	18	Unmodified	_VPLAPITDPQQLQLSPLK_			0	0	0	P31350	P31350	P31350	RRM2	Ribonucleoside-diphosphate reductase subunit M2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.569683	1957.12481	1.2932	0.0012668	1.5528	0.0015211	2.846	0.0027878	980.072828182719	16.032	0.13299	16.032	15.97	16.103	0	135	88	1.23356193185193	0.0575938931885878	1.23356193185193	497.558660544228	0	23.2305647657427						1067	16	5	NaN	NaN	NaN	0.0019143	1	30850	46.768	45.673	1	355710			21195	923	17874	18393	21195	21195		
VPLASQGLGPGSTVLLVVDK	20	Unmodified	_VPLASQGLGPGSTVLLVVDK_			0	0	0	P05161	P05161	P05161	ISG15	Ubiquitin-like protein ISG15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.56714	1949.11973	1.3865	0.0013527	0.097722	9.5334E-05	1.4843	0.001448	976.068786719867	16.236	0.20397	16.236	16.147	16.351	0	153	61	1.22165005014568	0.039733529145515	1.22165005014568	492.768243807379	0	16.0270294876752						1071	24	5	NaN	NaN	NaN	1.7293E-05	1	30706	74.643	74.024	1	349050			21196	526	17875	18394	21196	21196		
VPLDEALQR	9	Unmodified	_VPLDEALQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.790381	1039.56621	0.41469	0.00021597	-0.042733	-2.2255E-05	0.37196	0.00019371	520.790394160085	7.5447	0.16846	7.5447	7.4915	7.66	0	678	40	0.869855008346864	0.0264526463218361	0.869855008346864	353.028916427035	0	10.735753634819						426	20	3	NaN	NaN	NaN	0.017696	1	5222	45.489	24.401	1	251310			21197	1816	17876	18395	21197	21197		
VPLDVACAR	9	Unmodified	_VPLDVACAR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.765852	999.51715	0.1903	9.5296E-05	1.1437	0.00057271	1.334	0.00066801	500.766595279548	6.2944	0.2749	6.2944	6.2146	6.4895	0	690	64	0.86171403876517	0.0427668297358818	0.86171403876517	349.908001479109	0	17.3659186798485						477	32	3	NaN	NaN	NaN	0.0066274	1	4273	69.905	53.447	1	171060			21198	1816	17877	18396	21198	21198		
VPLEDLSEDPVVGHLGTSTEEGK	23	Unmodified	_VPLEDLSEDPVVGHLGTSTEEGK_			0	0	0	Q9UBP6	Q9UBP6	Q9UBP6	METTL1	tRNA (guanine-N(7)-)-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.399098	2407.17546	0.93217	0.00074891	-0.74605	-0.00059938	0.18612	0.00014953	803.398182735158	12.547	0.10642	12.547	12.493	12.6	0	531	43	0.969216233931596	0.028292695105214	0.969216233931596	585.627730895815	0	17.0952427903338						357	13	4	NaN	NaN	NaN	2.3981E-06	1	36385	38.656	37.405	1	83936			21199	3182	17878	18397	21199	21199		
VPLEVQEADEAK	12	Unmodified	_VPLEVQEADEAK_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.340632	1326.66671	1.7763	0.00118	0.81354	0.00054047	2.5898	0.0017205	664.341443336975	6.4806	0.34582	6.4806	6.3831	6.7289	0	507	49	0.985374541851584	0.0322987503458569	0.985374541851584	398.779074491677	0	13.0712386235959						611	40	3	NaN	NaN	NaN	3.6071E-07	1	13185	141.44	120.36	1	488530			21200	858	17879	18398	21200	21200		
VPLFSPNFSEK	11	Unmodified	_VPLFSPNFSEK_			0	0	0	Q9BQ52	Q9BQ52	Q9BQ52	ELAC2	Zinc phosphodiesterase ELAC protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.832246	1263.64994	0.9947	0.00062948	2.5194	0.0015944	3.5141	0.0022239	632.833374837661	12.227	0.16854	12.227	12.165	12.334	0	507	46	0.985374541851584	0.0302905481075687	0.985374541851584	398.984000032178	0	12.2648226981951						544	20	4	NaN	NaN	NaN	0.00071255	1	11331	78.932	59.676	1	159790			21201	2691	17880	18399	21201	21201		
VPLILNLIR	9	Unmodified	_VPLILNLIR_			0	0	0	Q15648	Q15648	Q15648	MED1	Mediator of RNA polymerase II transcription subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.855327	1049.6961	-0.51149	-0.00026897	-0.85344	-0.00044879	-1.3649	-0.00071776	525.854860994054	17.619	0.15071	17.619	17.539	17.69	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	360.410739578628	0	6.59707951645225						207	18	3	NaN	NaN	NaN	0.008797	1	5468	66.087	63.488	1	43636			21202	1861	17881	18400	21202	21202		
VPLLELK	7	Unmodified	_VPLLELK_			0	0	0		REV__O14920	REV__O14920			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.268022	810.521491	-1.041	-0.00042291	-0.98132	-0.00039868	-2.0223	-0.00082159	406.267686594281	13.584	0.097555	13.584	13.54	13.637	0	711	25	0.847456455381371	0.0163023058577868	0.847456455381371	345.205803555938	0	6.64063688194972						124	12	2	NaN	NaN	NaN	0.061438	1	1099	29.31	18.482	1	34693	+		21203	3483	17882	18401	21203	21203		
VPLLLEEQGVVDYFLR	16	Unmodified	_VPLLLEEQGVVDYFLR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.683893	1889.02985	-0.036363	-2.2934E-05	-0.69211	-0.0004365	-0.72847	-0.00045944	630.683413517076	20.031	0.053206	20.031	20.013	20.066	0	594	25	0.926715457081489	0.0162143291787672	0.926715457081489	560.827782241433	0	9.81255487255885						106	7	5	NaN	NaN	NaN	0.0004876	1	29360	58.476	55.391	1	41372			21204	741	17883	18402	21204	21204		
VPLLLEEQGVVDYFLR	16	Unmodified	_VPLLLEEQGVVDYFLR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.522202	1889.02985	1.1635	0.0011001	-0.62268	-0.00058875	0.54078	0.00051132	946.022618233637	20.031	0.079828	20.031	19.986	20.066	0	225	43	1.17390432875292	0.0279052631275762	1.17390432875292	473.615868501592	0	11.2584774655126						161	10	3	NaN	NaN	NaN	0.0016902	1	29361	59.67	57.96	1	62860			21205	741	17883	18402	21205	21205		
VPLLTAGAPALGFGVK	16	Unmodified	_VPLLTAGAPALGFGVK_			0	0	0	P16066	P16066	P16066	NPR1	Atrial natriuretic peptide receptor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.953227	1509.8919	1.4191	0.0010728	1.103	0.00083379	2.5221	0.0019066	755.954033286397	16.076	0.088673	16.076	16.041	16.129	0	288	31	1.13199748998575	0.0199844694124975	1.13199748998575	457.543544605196	0	8.07754880460317						244	11	4	NaN	NaN	NaN	0.00013189	1	18816	92.707	69.654	1	68220			21206	720	17884	18403	21206	21206		
VPLSAYER	8	Unmodified	_VPLSAYER_			0	0	0	Q9UQ35	Q9UQ35	Q9UQ35	SRRM2	Serine/arginine repetitive matrix protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	467.753267	933.491981	-0.43723	-0.00020452	1.9179	0.00089712	1.4807	0.00069261	467.754293379688	5.4164	0.16844	5.4164	5.3721	5.5405	0	729	34	0.835224628594324	0.0224359291106897	0.835224628594324	339.477185995479	0	9.11908703232262						305	20	2	NaN	NaN	NaN	0.026858	1	2939	53.679	39.144	1	136270			21207	3318	17885	18404	21207	21207		
VPLSQLLTSEDMTVSQR	17	Unmodified	_VPLSQLLTSEDMTVSQR_			0	0	0	A0FGR8	A0FGR8	A0FGR8	ESYT2	Extended synaptotagmin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	635.331302	1902.97208	-0.57793	-0.00036718	1.3481	0.00085649	0.77017	0.00048931	635.332912999058	14.799	0.18624	14.799	14.693	14.879	0	615	31	0.912521036363781	0.0202903977808542	0.912521036363781	552.20815411447	0	12.2786463635531						298	22	4	NaN	NaN	NaN	0.0015901	1	29665	57.042	51.015	1	55982			21208	4	17886	18405	21208	21208		
VPLVAEK	7	Unmodified	_VPLVAEK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	378.236722	754.45889	-0.4757	-0.00017993	0.62421	0.0002361	0.1485	5.6168E-05	378.236886252524	4.4233	0.19507	4.4233	4.3879	4.5829	0	837	40	0.761618911097395	0.0266409461065718	0.761618911097395	310.623334467403	0	10.8654070853704						268	23	3	NaN	NaN	NaN	0.067986	1	645	38.322	7.2639	1	63946			21209	1035	17887	18406	21209	21209		
VPLVAPEDLRDDIIENAPTTHTEEYSGEEK	30	Unmodified	_VPLVAPEDLRDDIIENAPTTHTEEYSGEEK_			0	0	1	O14744	O14744	O14744	PRMT5	Protein arginine N-methyltransferase 5;Protein arginine N-methyltransferase 5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	842.659858	3366.61032	1.7179	0.0014476	0.49545	0.0004175	2.2134	0.0018651	842.910789784594	13.77	0.14186	13.77	13.7	13.841	0	429	31	1.03776581230406	0.0201143318791703	1.03776581230406	834.693404502101	0	16.1783130225056						557	17	6	NaN	NaN	NaN	0.024073	1	38589	27.781	27.708	1	139870			21210	115	17888	18407	21210	21210		
VPNVLTFDFMSK	12	Unmodified	_VPNVLTFDFMSK_			0	0	0	Q9H6R0	Q9H6R0	Q9H6R0	DHX33	Putative ATP-dependent RNA helicase DHX33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.360313	1396.70607	-0.35043	-0.00024508	0.35357	0.00024728	0.0031395	2.1956E-06	699.360112698629	17.069	0.14188	17.069	17.007	17.149	0	495	25	0.993446994398923	0.0161404424258682	0.993446994398923	401.838082353527	0	6.52862655915794						225	17	3	NaN	NaN	NaN	0.006807	1	15346	28.328	13.565	1	43750			21211	2905	17889	18408	21211	21211		
VPPAINQFTQALDR	14	Unmodified	_VPPAINQFTQALDR_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	523.950973	1568.83109	-1.4517	-0.00076062	-0.73537	-0.0003853	-2.1871	-0.0011459	523.950155189238	14.427	0.15071	14.427	14.32	14.471	0	765	25	0.810730346695089	0.0163431521630455	0.810730346695089	491.36470804763	0	9.90520241891608						202	18	3	NaN	NaN	NaN	0.069334	1	20638	12.018	10.516	1	36698			21212	1391	17890	18409	21212	21212		
VPPAINQFTQALDR	14	Unmodified	_VPPAINQFTQALDR_			0	0	0	P62424	P62424	P62424	RPL7A	60S ribosomal protein L7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.422822	1568.83109	2.3325	0.001832	-0.21305	-0.00016733	2.1195	0.0016647	785.424104322115	14.409	0.65616	14.409	14.045	14.701	0	375	88	1.07392668217569	0.0582150376473023	1.07392668217569	433.923669604119	0	23.5219807658404						3413	75	6	NaN	NaN	NaN	9.9422E-08	1	20640	104.04	96.484	1	2741600			21213	1391	17890	18409	21213	21213		
VPPPPPIAR	9	Unmodified	_VPPPPPIAR_			0	0	0	P07910	P07910	P07910	HNRNPC	Heterogeneous nuclear ribonucleoproteins C1/C2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.28982	942.565087	-0.028234	-1.3335E-05	-0.48073	-0.00022704	-0.50897	-0.00024038	472.289589069854	5.6203	0.45225	5.6203	5.5051	5.9573	0	771	145	0.806643990516186	0.0979229099938118	0.806643990516186	327.81480859434	0	39.7952261146586						1830	52	3	NaN	NaN	NaN	0.012186	1	3114	46.835	16.274	1	1176400			21214	568	17891	18410	21214	21214		
VPPPWLIAMQR	11	Unmodified	_VPPPWLIAMQR_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.368275	1306.722	0.90296	0.00059087	-1.6466	-0.0010775	-0.74367	-0.00048663	654.367588393509	15.402	0.25725	15.402	15.287	15.544	0	528	61	0.971237000454584	0.0404125540648674	0.971237000454584	393.119487722726	0	16.3574519340921						613	30	3	NaN	NaN	NaN	0.0031547	1	12569	43.734	35.261	1	135960			21215	1667	17892	18411	21215	21215		
VPQIEVETHK	10	Unmodified	_VPQIEVETHK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	393.883789	1178.62954	-0.73478	-0.00028942	-0.48282	-0.00019018	-1.2176	-0.00047959	393.883540956131	4.8844	0.11526	4.8844	4.8489	4.9642	0	870	55	0.739054571787983	0.0369724185351381	0.739054571787983	449.216788162762	0	22.4728074745321						367	14	3	NaN	NaN	NaN	0.00048361	1	8848	72.365	60.298	1	116060			21216	1737	17893	18412	21216	21216		
VPSENVLGEVGSGFK	15	Unmodified	_VPSENVLGEVGSGFK_			0	0	0	P49748	P49748	P49748	ACADVL	Very long-chain specific acyl-CoA dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.893563	1517.77257	1.7094	0.001299	0.29343	0.00022298	2.0028	0.0015219	759.893947967688	12.609	0.26602	12.609	12.511	12.777	0	396	55	1.05987478976334	0.0361608698716229	1.05987478976334	428.371973803922	0	14.6152199778548						958	31	5	NaN	NaN	NaN	0.0011702	1	19068	59.67	56.568	1	414510			21217	1145	17894	18413	21217	21217		
VPSLLTDYILK	11	Unmodified	_VPSLLTDYILK_			0	0	0	Q9UHY8	Q9UHY8	Q9UHY8	FEZ2	Fasciculation and elongation protein zeta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.373746	1260.73294	0.40935	0.00025845	-0.9704	-0.00061268	-0.56105	-0.00035423	631.372880731893	16.599	0.11527	16.599	16.546	16.661	0	519	28	0.97729762293174	0.0181793540549698	0.97729762293174	395.723519619119	0	7.36111272782387						221	14	3	NaN	NaN	NaN	0.0061671	1	11251	70.389	46.268	1	50133			21218	3228	17895	18414	21218	21218		
VPSLVGSFIR	10	Unmodified	_VPSLVGSFIR_			0	0	0	P78417	P78417	P78417	GSTO1	Glutathione S-transferase omega-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.818941	1073.62333	0.77379	0.00041616	-0.70523	-0.00037929	0.068559	3.6872E-05	537.81869326959	14.019	0.38127	14.019	13.779	14.161	0	633	52	0.900343422309015	0.0345200008308083	0.900343422309015	365.251043787316	0	14.0040633635732						1161	44	4	NaN	NaN	NaN	5.2425E-10	1	6055	171.75	130.72	1	1026200			21219	1464	17896	18415	21219	21219		
VPSTEAEALASSLMGLFEK	19	Unmodified	_VPSTEAEALASSLMGLFEK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	660.671324	1978.99214	0.17581	0.00011615	-0.24167	-0.00015967	-0.065864	-4.3515E-05	660.671822376196	20.128	0.026603	20.128	20.128	20.155	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	586.354069473024	0	9.78082449389876						67	4	4	NaN	NaN	NaN	0.065346	1	31269	11.918	11.351	1	41003			21220	1161	17897	18416	21220	21220		
VPSTEAEALASSLMGLFEK	19	Unmodified	_VPSTEAEALASSLMGLFEK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	990.503348	1978.99214	1.0361	0.0010263	-0.02301	-2.2791E-05	1.0131	0.0010035	991.004886271915	20.128	0.053196	20.128	20.102	20.155	0	144	67	1.22760721615852	0.0437068863783321	1.22760721615852	495.118296655633	0	17.6278526640452						171	7	4	NaN	NaN	NaN	0.0020037	1	31270	41.499	40.228	1	61256			21221	1161	17897	18416	21221	21221		
VPSVSSSALVSSLHLLK	17	Unmodified	_VPSVSSSALVSSLHLLK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.336605	1722.98799	0.36688	0.00021108	-0.066819	-3.8444E-05	0.30006	0.00017264	575.336538030204	14.967	0.12414	14.967	14.932	15.056	-1.7764E-15	597	46	0.924688525662974	0.0303997669355048	0.924688525662974	559.993698524869	0	18.4101753704598						449	15	4	NaN	NaN	NaN	0.0012294	1	25140	68.108	65.806	1	193870			21222	3452	17898	18417	21222	21222		
VPSVSSSALVSSLHLLK	17	Unmodified	_VPSVSSSALVSSLHLLK_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.501269	1722.98799	1.1945	0.0010303	0.60776	0.00052419	1.8023	0.0015545	862.501799534715	14.976	0.097547	14.976	14.932	15.03	0	114	40	1.24744674793813	0.025779022857559	1.24744674793813	503.640272576133	0	10.4079425596219						319	12	4	NaN	NaN	NaN	8.6495E-19	1	25141	165.72	160.03	1	112790			21223	3452	17898	18417	21223	21223		
VPTANVSVVDLTCR	14	Unmodified	_VPTANVSVVDLTCR_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.936335	1529.78718	-0.56812	-0.00029027	-0.19901	-0.00010168	-0.76713	-0.00039196	510.936371110528	11.199	0.14188	11.199	11.146	11.287	0	741	70	0.827064408645228	0.0468854394660304	0.827064408645228	501.376171503437	0	28.4225048170559						635	17	3	NaN	NaN	NaN	8.9913E-05	1	19433	101.45	82.122	1	177560			21224	513	17899	18418	21224	21224		
VPTANVSVVDLTCR	14	Unmodified	_VPTANVSVVDLTCR_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.900865	1529.78718	2.5993	0.0019908	1.6391	0.0012554	4.2384	0.0032462	765.902673833322	11.199	0.74497	11.199	11.039	11.784	0	441	253	1.02971785871157	0.169476060901252	1.02971785871157	416.1538330572	0	68.492657244713						4252	85	6	NaN	NaN	NaN	2.061E-33	1	19436	273.02	232.49	1	10501000			21225	513	17899	18418	21225	21225		
VPTANVSVVDLTCRLEK	17	Unmodified	_VPTANVSVVDLTCRLEK_			0	0	1	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.343542	1900.0088	0.13443	8.5278E-05	-0.3476	-0.0002205	-0.21317	-0.00013522	634.343303314755	12.05	0.07981	12.05	12.006	12.086	0	597	25	0.924688525662974	0.0162165760860672	0.924688525662974	559.577574865533	0	9.81350159217959						175	10	4	NaN	NaN	NaN	0.028841	1	29605	28.277	23.971	1	43803			21226	513	17900	18419	21226	21226		
VPTANVSVVDLTCRLEK	17	Unmodified	_VPTANVSVVDLTCRLEK_			0	0	1	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	634.343542	1900.0088	0.52777	0.00033479	-0.26112	-0.00016564	0.26664	0.00016914	634.678197355787	12.493	0.097518	12.493	12.449	12.547	0	603	28	0.920633820089869	0.0182499701953044	0.920633820089869	557.12385929368	0	11.044015117987						216	12	4	NaN	NaN	NaN	0.00016482	1	29606	78.888	76.904	1	50401			21227	513	17900	18419	21227	21227		
VPTLAVPAISLPDDVR	16	Unmodified	_VPTLAVPAISLPDDVR_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.974887	1661.93522	2.0289	0.001688	0.52583	0.00043747	2.5547	0.0021255	831.974619866556	16.493	0.17731	16.493	16.431	16.608	0	342	88	1.09598084995137	0.0580628107624948	1.09598084995137	442.617605786417	0	23.448970195114						600	21	2	NaN	NaN	NaN	0.0014376	1	23408	54.309	52.834	1	159170			21228	849	17901	18420	21228	21228		
VPVDEFDGK	9	Unmodified	_VPVDEFDGK_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.248015	1004.48148	0.50603	0.00025466	-1.1198	-0.00056351	-0.61372	-0.00030885	503.248244392141	5.9929	0.33704	5.9929	5.8775	6.2146	0	714	46	0.845418525735192	0.030568952954407	0.845418525735192	343.26801200145	0	12.4120106080002						436	39	2	NaN	NaN	NaN	0.011448	1	4379	69.716	47.329	1	212900			21229	2404	17902	18421	21229	21229		
VPVDVAYQR	9	Unmodified	_VPVDVAYQR_			0	0	0	Q15149;P58107	Q15149;P58107	Q15149	PLEC;EPPK1	Plectin;Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.785099	1045.55564	0.26397	0.00013826	-0.08481	-4.4422E-05	0.17916	9.3842E-05	523.785362236386	5.8775	0.2306	5.8775	5.8066	6.0372	0	720	67	0.841341816837976	0.0448126835301117	0.841341816837976	341.431328308367	0	18.1857762879925						703	27	3	NaN	NaN	NaN	0.0010128	1	5375	84.368	70.72	1	312230			21230	1816;1298	17903	18422	21230	21230		
VPVDVAYR	8	Unmodified	_VPVDVAYR_			0	0	0	Q15149;P58107	Q15149;P58107	Q15149	PLEC;EPPK1	Plectin;Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.75581	917.497067	0.061146	2.8112E-05	1.826	0.00083951	1.8871	0.00086762	459.757058139576	6.0017	0.35475	6.0017	5.9041	6.2589	0	756	49	0.816857749704129	0.0326681314822594	0.816857749704129	332.095911121592	0	13.2813245551878						808	41	4	NaN	NaN	NaN	0.00056171	1	2657	96.51	74.124	1	657110			21231	1816;1298	17904	18423	21231	21231		
VPVGDQPPDIEYQIK	15	Unmodified	_VPVGDQPPDIEYQIK_			0	0	0	P50570	P50570	P50570	DNM2	Dynamin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.440877	1696.8672	1.8459	0.001568	-2.6757	-0.0022729	-0.82983	-0.00070489	849.438904568284	10.613	0.10638	10.613	10.569	10.676	0	363	25	1.08195024817156	0.0160427097946323	1.08195024817156	436.876901948545	0	6.47782960980214						173	13	3	NaN	NaN	NaN	0.060512	1	24410	31.04	29.33	1	40617			21232	1167	17905	18424	21232	21232		
VPVHDVTDASK	11	Unmodified	_VPVHDVTDASK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.303852	1166.59315	1.7449	0.0010196	-4.5946	-0.0026847	-2.8497	-0.0016651	584.801816713336	2.8272	0.34579	2.8272	2.7385	3.0843	0	624	46	0.906433495720521	0.0304419315193813	0.906433495720521	367.350216137232	0	12.3371986759936						371	40	2	NaN	NaN	NaN	0.0068677	1	8511	59.645	41.243	1	122280			21233	792	17906	18425	21233	21233		
VPVHDVTDASK	11	Unmodified	_VPVHDVTDASK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	389.87166	1166.59315	-0.66743	-0.00026021	0.75388	0.00029391	0.086441	3.3701E-05	389.872231735828	2.836	0.12414	2.836	2.8094	2.9336	0	873	28	0.737001551771189	0.0184746054874579	0.737001551771189	448.022278188795	0	11.2306884825933						148	15	3	NaN	NaN	NaN	0.041323	1	8512	24.689	22.53	1	30307			21234	792	17906	18425	21234	21234		
VPVLGSLLNLPGIR	14	Unmodified	_VPVLGSLLNLPGIR_			0	0	0	Q9Y3E0	Q9Y3E0	Q9Y3E0	GOLT1B	Vesicle transport protein GOT1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.453394	1446.89223	0.15472	0.00011209	0.14823	0.00010738	0.30295	0.00021947	724.453534861632	19.233	0.14187	19.233	19.144	19.286	0	468	43	1.01159370163332	0.0282067707809603	1.01159370163332	409.039058544519	0	11.405439699947						385	17	4	NaN	NaN	NaN	1.3562E-07	1	16904	90.306	81.833	1	99520			21235	3392	17907	18426	21235	21235		
VPVLLEEQSIVK	12	Unmodified	_VPVLLEEQSIVK_			0	0	0	Q9NRF8	Q9NRF8	Q9NRF8	CTPS2	CTP synthase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.403035	1352.79152	2.0606	0.0013958	-0.50237	-0.00034031	1.5582	0.0010555	677.402722579521	12.839	0.13304	12.839	12.777	12.91	0	444	28	1.02770517576159	0.0181166496995924	1.02770517576159	415.827393582212	0	7.33031165230909						273	16	3	NaN	NaN	NaN	3.244E-05	1	13992	101.48	82.158	1	72106			21236	3016	17908	18427	21236	21236		
VPVLQLDSGNYLFSTSAICR	20	Unmodified	_VPVLQLDSGNYLFSTSAICR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1120.57263	2239.1307	0.89282	0.0010005	-2.1169	-0.0023721	-1.2241	-0.0013716	1121.07165998029	17.575	0.10639	17.575	17.539	17.646	0	96	76	1.2593374219024	0.0495343282340968	1.2593374219024	507.504522817449	0	19.9620015861614						676	13	5	NaN	NaN	NaN	0.0013605	1	35083	54.912	53.733	1	143170			21237	1284	17909	18428	21237	21237		
VPVNEVVIR	9	Unmodified	_VPVNEVVIR_			0	0	0	O75127	O75127	O75127	PTCD1	Pentatricopeptide repeat-containing protein 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.811116	1023.60768	0.11639	5.9688E-05	0.42933	0.00022017	0.54572	0.00027985	512.811577890211	7.4383	0.062071	7.4383	7.4028	7.4649	0	687	22	0.863749705078866	0.0142496650202144	0.863749705078866	350.622510660141	0	5.78437630262044						86	8	2	NaN	NaN	NaN	0.053302	1	4842	46.447	42.988	1	17657			21238	303	17910	18429	21238	21238		
VPVPEDK	7	Unmodified	_VPVPEDK_			0	0	0	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	392.215986	782.417419	-0.96097	-0.00037691	2.3493	0.00092143	1.3883	0.00054452	392.216885005106	2.9158	0.1419	2.9158	2.8892	3.0311	0	855	34	0.749315378969369	0.0225737784319833	0.749315378969369	305.410837597492	0	9.20076749009849						177	17	2	NaN	NaN	NaN	0.026367	1	845	46.835	31.337	1	32599			21239	372	17911	18430	21239	21239		
VPVSDLLLSYESPK	14	Unmodified	_VPVSDLLLSYESPK_			0	0	0	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.921789	1545.82903	0.77167	0.00059721	-1.7139	-0.0013264	-0.94219	-0.00072918	773.921217161434	14.826	0.23058	14.826	14.693	14.923	0	372	61	1.07593298845566	0.0401565865684175	1.07593298845566	434.790922969214	0	16.2275155838805						569	27	4	NaN	NaN	NaN	0.0046252	1	19923	52.863	42.842	1	165070			21240	1870	17912	18431	21240	21240		
VPVVFVTNAGNILQHSK	17	Unmodified	_VPVVFVTNAGNILQHSK_			0	0	0	Q9BXW7	Q9BXW7	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.343982	1822.01012	-0.1673	-0.00010178	0.30549	0.00018584	0.13818	8.4064E-05	608.344163124622	13.212	0.11528	13.212	13.159	13.274	0	636	28	0.898312834727904	0.0182752899876304	0.898312834727904	543.784751315205	0	11.0627652605531						243	14	4	NaN	NaN	NaN	3.9432E-10	1	27778	106.47	102.48	1	55269			21241	2790	17913	18432	21241	21241		
VPVVFVTNAGNILQHSK	17	Unmodified	_VPVVFVTNAGNILQHSK_			0	0	0	Q9BXW7	Q9BXW7	Q9BXW7	CECR5	Cat eye syndrome critical region protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.012335	1822.01012	0.46358	0.00042279	0.082923	7.5627E-05	0.54651	0.00049842	912.51387887401	13.221	0.070945	13.221	13.176	13.247	0	108	22	1.25141139212444	0.0138734035771404	1.25141139212444	505.021745945022	0	5.59877474411752						102	9	3	NaN	NaN	NaN	0.027638	1	27779	35.45	33.608	1	16807			21242	2790	17913	18432	21242	21242		
VQADVPPEILNNVGALHFR	19	Unmodified	_VQADVPPEILNNVGALHFR_			0	0	0	Q6PD62	Q6PD62	Q6PD62	CTR9	RNA polymerase-associated protein CTR9 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	697.044484	2088.11162	0.54678	0.00038113	-0.69755	-0.00048623	-0.15078	-0.0001051	697.378488523755	15.296	0.15956	15.296	15.26	15.42	0	522	37	0.975277694896658	0.0242408171075922	0.975277694896658	589.806533272675	0	14.659816764743						306	19	4	NaN	NaN	NaN	4.1245E-07	1	33159	93.649	90.904	1	79437			21243	2071	17914	18433	21243	21243		
VQAELSQPLTAGGAISELL	19	Unmodified	_VQAELSQPLTAGGAISELL_			0	0	0	Q15291	Q15291	Q15291	RBBP5	Retinoblastoma-binding protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.01748	1896.02041	1.3403	0.001272	0.61045	0.00057933	1.9508	0.0018513	949.018289296386	19.712	0.053221	19.712	19.694	19.747	0	216	40	1.17988115188462	0.0259031301406019	1.17988115188462	476.014438180176	0	10.4504287752131						148	7	3	NaN	NaN	NaN	4.5449E-05	1	29523	57.279	44.104	1	28463			21244	1830	17915	18434	21244	21244		
VQAGDVITIDK	11	Unmodified	_VQAGDVITIDK_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.821878	1157.6292	0.8082	0.00046861	-0.59311	-0.0003439	0.21509	0.00012472	579.821614255927	7.9881	0.17744	7.9881	7.9438	8.1213	0	645	64	0.892219381832517	0.0426423617596632	0.892219381832517	361.622361896646	0	17.2832286435078						610	21	4	NaN	NaN	NaN	0.00070056	1	8296	87.942	27.353	1	261550			21245	3325	17916	18435	21245	21245		
VQAHAAAALINFTEDCPK	18	Unmodified	_VQAHAAAALINFTEDCPK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	652.659642	1954.9571	1.6037	0.0010467	-0.83124	-0.00054251	0.77245	0.00050415	652.9946479663	10.986	0.14188	10.986	10.95	11.092	0	519	94	0.97729762293174	0.0627045479031214	0.97729762293174	591.293703878365	0	37.9380891855957						741	17	5	NaN	NaN	NaN	0.015577	1	30793	65.173	62.783	1	170780			21246	74	17917	18436	21246	21246		
VQAHAAAALINFTEDCPK	18	Unmodified	_VQAHAAAALINFTEDCPK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	978.485824	1954.9571	1.8645	0.0018244	-0.90336	-0.00088393	0.96111	0.00094043	978.985782313543	11.004	0.062085	11.004	10.959	11.021	0	171	28	1.20972836110953	0.0178911243069704	1.20972836110953	487.949179830198	0	7.21646256505005						114	8	3	NaN	NaN	NaN	0.029042	1	30794	46.768	43.263	1	17294			21247	74	17917	18436	21247	21247		
VQALTTDISLIFAALK	16	Unmodified	_VQALTTDISLIFAALK_			0	0	0	Q6PKG0	Q6PKG0	Q6PKG0	LARP1	La-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	852.500738	1702.98692	1.0216	0.00087095	-1.7565	-0.0014975	-0.7349	-0.00062651	853.000353589263	20.146	0.017723	20.146	20.146	20.164	0	291	25	1.12999890578964	0.0159919751771491	1.12999890578964	456.265014216561	0	6.45715561684898						45	3	3	NaN	NaN	NaN	0.0034478	1	24592	58.313	55.434	1	16668			21248	2079	17918	18437	21248	21248		
VQAMQISSEK	10	Unmodified	_VQAMQISSEK_			0	0	0	Q9UKY7	Q9UKY7	Q9UKY7	CDV3	Protein CDV3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.786981	1119.55941	1.7262	0.00096801	-0.0096646	-5.4198E-06	1.7165	0.00096259	560.78726223249	4.4145	0.15073	4.4145	4.3879	4.5386	0	627	28	0.90440375274676	0.0182702218155131	0.90440375274676	366.707473635514	0	7.40800429496142						210	18	2	NaN	NaN	NaN	0.00081129	1	7252	95.311	61.915	1	97783			21249	3271	17919	18438	21249	21249		
VQANLGAPDINIEGLDAK	18	Unmodified	_VQANLGAPDINIEGLDAK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.486347	1836.95814	2.2609	0.0020789	-1.6782	-0.0015431	0.58267	0.00053576	919.48595595769	13.779	0.12411	13.779	13.735	13.859	0	249	76	1.15795408347545	0.0498959645511332	1.15795408347545	467.277230747541	0	20.1348641311867						654	15	4	NaN	NaN	NaN	1.449E-10	1	28165	118.87	105.65	1	245780			21250	1584	17920	18439	21250	21250		
VQAQVIQETIVPK	13	Unmodified	_VQAQVIQETIVPK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.924666	1451.83478	1.9921	0.0014481	0.21028	0.00015286	2.2024	0.001601	726.924964981312	9.975	0.19505	9.975	9.9041	10.099	0	429	55	1.03776581230406	0.0361958137667961	1.03776581230406	419.608251590476	0	14.635346384999						721	23	5	NaN	NaN	NaN	3.1521E-13	1	17040	162.21	120.41	1	443100			21251	1852	17921	18440	21251	21251		
VQASLAANTFTITGHAETK	19	Unmodified	_VQASLAANTFTITGHAETK_			0	0	0	P20290	P20290	P20290	BTF3	Transcription factor BTF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.510354	1959.00615	0.77034	0.00075533	0.32128	0.00031502	1.0916	0.0010704	981.012300643513	9.4608	0.2394	9.4608	9.4253	9.6647	0	87	52	1.26527909472281	0.033678715790729	1.26527909472281	510.348368910067	0	13.584258004792						688	28	5	NaN	NaN	NaN	3.2921E-15	1	30892	182.22	159.27	1	165150			21252	778	17922	18441	21252	21252		
VQASLAANTFTITGHAETK	19	Unmodified	_VQASLAANTFTITGHAETK_			0	0	0	P20290	P20290	P20290	BTF3	Transcription factor BTF3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.009328	1959.00615	1.1201	0.00073254	1.0993	0.00071894	2.2194	0.0014515	654.344109978445	9.4696	0.31034	9.4696	9.4164	9.7268	0	522	43	0.975277694896658	0.0282770433233913	0.975277694896658	590.062991739637	0	17.10819069098						661	36	5	NaN	NaN	NaN	3.7291E-05	1	30893	82.822	72.801	1	363880			21253	778	17922	18441	21253	21253		
VQASLSANTFAITGHAEAK	19	Unmodified	_VQASLSANTFAITGHAEAK_			0	0	0	Q96K17	Q96K17	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.497246	1914.97994	0.69604	0.00066715	0.10566	0.00010128	0.8017	0.00076843	958.497487293946	9.3366	0.053196	9.3366	9.3189	9.3721	0	123	22	1.24149774378079	0.0138848160861975	1.24149774378079	500.83717802327	0	5.6013248037051						90	7	3	NaN	NaN	NaN	9.9799E-15	1	29955	132.01	119.84	1	14290			21254	2571	17923	18442	21254	21254		
VQASLSANTFAITGHAEAK	19	Unmodified	_VQASLSANTFAITGHAEAK_			0	0	0	Q96K17	Q96K17	Q96K17	BTF3L4	Transcription factor BTF3 homolog 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.333923	1914.97994	0.76817	0.00049112	1.0182	0.00065094	1.7863	0.0011421	639.333910568482	9.3366	0.15963	9.3366	9.2923	9.4519	0	543	34	0.961130371139249	0.0222407417065758	0.961130371139249	581.597511792581	0	13.458278320384						262	19	3	NaN	NaN	NaN	0.015133	1	29956	63.947	62.472	1	83052			21255	2571	17923	18442	21255	21255		
VQAWYMDDAPGDPR	14	Unmodified	_VQAWYMDDAPGDPR_			0	0	0	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.859197	1619.70384	2.5591	0.0020751	0.35919	0.00029125	2.9183	0.0023663	810.859536373293	10.551	0.21284	10.551	10.463	10.676	0	399	49	1.0578662689527	0.0321341264646959	1.0578662689527	427.31692362137	0	12.9803326442654						602	25	5	NaN	NaN	NaN	1.5544E-05	1	22168	110.58	92.851	1	212570			21256	2757	17924	18443	21256	21256		
VQDAFAAAK	9	Unmodified	_VQDAFAAAK_			0	0	0	Q01650	Q01650	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	460.745442	919.476331	-0.08722	-4.0186E-05	1.0444	0.00048121	0.9572	0.00044103	460.746352000964	4.1662	0.1951	4.1662	4.0864	4.2815	0	759	34	0.814815566123307	0.0224671474092853	0.814815566123307	331.255141046229	0	9.1337946811426						331	23	2	NaN	NaN	NaN	0.022723	1	2693	45.489	24.831	1	129250			21257	1518	17925	18444	21257	21257		
VQDDEVGDGTTSVTVLAAELLR	22	Unmodified	_VQDDEVGDGTTSVTVLAAELLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.58444	2287.15433	0.46299	0.00052993	0.017064	1.9531E-05	0.48006	0.00054947	1145.08617227875	19.667	0.14187	19.667	19.632	19.774	0	69	85	1.27715511956461	0.0554518656540803	1.27715511956461	514.618275832921	0	22.343835182957						774	17	6	NaN	NaN	NaN	1.0353E-29	1	35540	202.15	190.47	1	302680			21258	1461	17926	18445	21258	21258		
VQDDEVGDGTTSVTVLAAELLR	22	Unmodified	_VQDDEVGDGTTSVTVLAAELLR_			0	0	0	P78371	P78371	P78371	CCT2	T-complex protein 1 subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.392055	2287.15433	1.0947	0.0008357	-0.30526	-0.00023303	0.78946	0.00060267	763.726156507291	19.667	0.088686	19.667	19.641	19.729	0	441	34	1.02971785871157	0.022139515615524	1.02971785871157	622.371800957587	0	13.381345277631						335	11	6	NaN	NaN	NaN	4.3519E-08	1	35541	89.636	81.269	1	140910			21259	1461	17926	18445	21259	21259		
VQDLFCSVGLNVNNPHFLIMQGR	23	Unmodified	_VQDLFCSVGLNVNNPHFLIMQGR_			0	0	0	O95347	O95347	O95347	SMC2	Structural maintenance of chromosomes protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	886.780825	2657.32065	0.96533	0.00085603	0.30139	0.00026727	1.2667	0.0011233	887.115558976819	17.442	0.088662	17.442	17.397	17.486	0	474	37	1.00756305028564	0.024187253928307	1.00756305028564	608.469018474705	0	14.6067232747204						294	11	5	NaN	NaN	NaN	1.5215E-06	1	37470	73.532	71.081	1	73884			21260	423	17927	18446	21260	21260		
VQDLLEFLHEK	11	Unmodified	_VQDLLEFLHEK_			0	0	0	O75962	O75962	O75962	TRIO	Triple functional domain protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	457.581998	1369.72417	-2.1269	-0.00097324	-0.13482	-6.1691E-05	-2.2617	-0.0010349	457.581784637893	14.311	0.062069	14.311	14.285	14.347	0	774	16	0.804600385996946	0.010219444721198	0.804600385996946	488.26832286718	0	6.20162657325909						83	8	3	NaN	NaN	NaN	0.059092	1	14487	14.455	12.485	1	14941			21261	374	17928	18447	21261	21261		
VQDTSNTGLGEDIIHQLSK	19	Unmodified	_VQDTSNTGLGEDIIHQLSK_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.683281	2054.02801	0.61992	0.00042507	0.65942	0.00045215	1.2793	0.00087722	685.683924480021	13.292	0.13303	13.292	13.238	13.371	-1.7764E-15	552	31	0.955063035883597	0.0202286526818168	0.955063035883597	577.644811389867	0	12.234769668631						357	16	4	NaN	NaN	NaN	2.8751E-05	1	32598	61.23	55.531	1	106580			21262	2200	17929	18448	21262	21262		
VQEANIHQFMAQFHEK	16	Unmodified	_VQEANIHQFMAQFHEK_			0	0	0	Q14139	Q14139	Q14139	UBE4A	Ubiquitin conjugation factor E4 A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	489.99008	1955.93122	-1.2763	-0.00062535	1.016	0.00049781	-0.26029	-0.00012754	490.241367434839	10.543	0.079815	10.543	10.498	10.578	0	774	22	0.804600385996946	0.0143052324654583	0.804600385996946	649.071116011659	0	11.5400307565804						148	10	4	NaN	NaN	NaN	0.051551	1	30815	28.228	23.411	1	31961			21263	1724	17930	18449	21263	21263		
VQEGETIEDGAR	12	Unmodified	_VQEGETIEDGAR_			0	0	0	P36639	P36639	P36639	NUDT1	7,8-dihydro-8-oxoguanine triphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.309863	1302.60517	2.957	0.0019289	-2.4886	-0.0016233	0.46842	0.00030556	652.308190303292	3.7849	0.22167	3.7849	3.714	3.9356	0	585	55	0.932794566565362	0.0364569900651212	0.932794566565362	377.57195190688	0	14.7568793740106						387	26	3	NaN	NaN	NaN	0.00054665	1	12421	71.896	28.624	1	102030			21264	989	17931	18450	21264	21264		
VQEIQVVK	8	Unmodified	_VQEIQVVK_			0	0	0	P49406	P49406	P49406	MRPL19	39S ribosomal protein L19, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.784567	941.554582	-0.86711	-0.00040909	1.2651	0.00059687	0.39802	0.00018778	471.785138326266	5.3189	0.11526	5.3189	5.2923	5.4076	0	750	25	0.820941264895493	0.0163340619501384	0.820941264895493	333.630263873637	0	6.63815748042185						138	14	2	NaN	NaN	NaN	0.0391	1	3093	42.075	24.679	1	36233			21265	1130	17932	18451	21265	21265		
VQELGHGCAALVTK	14	Unmodified	_VQELGHGCAALVTK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.8903	1481.76605	1.5819	0.0011736	-0.56482	-0.00041903	1.0171	0.00075459	741.889431613234	5.3898	0.062128	5.3898	5.3632	5.4254	0	390	25	1.06389100039157	0.0160648436588446	1.06389100039157	430.089634653521	0	6.49438968602556						128	8	3	NaN	NaN	NaN	1.2848E-05	1	17972	80.815	56.979	1	29352			21266	3406	17933	18452	21266	21266		
VQELGLSAPLTVLPTITCGHTIEILR	26	Unmodified	_VQELGLSAPLTVLPTITCGHTIEILR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	944.52816	2830.56265	0.77384	0.00073092	-0.6292	-0.0005943	0.14464	0.00013661	944.86199711769	19.126	0.07981	19.126	19.091	19.171	0	381	58	1.06991323971056	0.0381408649762871	1.06991323971056	645.916555972475	0	23.025994288994						563	10	5	NaN	NaN	NaN	3.0603E-06	1	37953	53.44	50.672	1	166290			21267	970	17934	18453	21267	21267		
VQELGLSAPLTVLPTITCGHTIEILR	26	Unmodified	_VQELGLSAPLTVLPTITCGHTIEILR_			0	0	0	P35520	P35520	P35520	CBS	Cystathionine beta-synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	944.52816	2830.56265	0.13398	0.00012654	1.4036	0.0013258	1.5376	0.0014523	944.864165864489	19.126	0.044342	19.126	19.109	19.153	0	162	13	1.21569043230068	0.00794779250377564	1.21569043230068	733.923593243551	0	4.79815607472221						61	6	4	NaN	NaN	NaN	0.034773	1	37954	10.25	9.1535	1	7852.2			21268	970	17934	18453	21268	21268		
VQELQNLLK	9	Unmodified	_VQELQNLLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.821681	1083.62881	0.70957	0.00038517	3.3956	0.0018432	4.1052	0.0022284	542.821859720928	10.684	0.16851	10.684	10.605	10.773	0	621	37	0.908462957275599	0.0243518545960122	0.908462957275599	368.50184595002	0	9.87789683560499						339	20	3	NaN	NaN	NaN	8.9366E-06	1	6311	150.24	68.922	1	102610			21269	2167	17935	18454	21269	21269		
VQELQQGAFGR	11	Unmodified	_VQELQQGAFGR_			0	0	0	Q8TDD1	Q8TDD1	Q8TDD1	DDX54	ATP-dependent RNA helicase DDX54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.822744	1231.63093	1.3471	0.00083093	-2.2518	-0.001389	-0.90471	-0.00055805	616.821808505369	6.2767	0.097576	6.2767	6.2323	6.3299	0	573	22	0.940896116921038	0.014172805463205	0.940896116921038	381.081485628192	0	5.74026575761786						180	12	3	NaN	NaN	NaN	0.00038012	1	10365	92.732	51.707	1	59437			21270	2347	17936	18455	21270	21270		
VQEMVESNEAK	11	Unmodified	_VQEMVESNEAK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.29791	1262.58127	2.1708	0.0013726	-0.19906	-0.00012587	1.9717	0.0012467	632.297556171543	3.2883	0.1064	3.2883	3.2617	3.3681	0	558	31	0.951016745717027	0.0202342542182106	0.951016745717027	385.075859047465	0	8.19304482318825						176	13	3	NaN	NaN	NaN	0.0028184	1	11287	57.888	44.614	1	32418			21271	1784	17937	18456	21271	21271		
VQENCIDLVGR	11	Unmodified	_VQENCIDLVGR_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.827169	1301.63978	1.5808	0.0010304	-0.70561	-0.00045993	0.87517	0.00057046	651.826395766135	7.935	0.19512	7.935	7.8729	8.068	0	558	43	0.951016745717027	0.0283201170105575	0.951016745717027	384.950824031881	0	11.4633653182141						306	23	2	NaN	NaN	NaN	6.9843E-06	1	12395	92.428	72.245	1	194760			21272	343	17938	18457	21272	21272		
VQEQLGNDVVEK	12	Unmodified	_VQEQLGNDVVEK_			0	0	0	O15305	O15305	O15305	PMM2	Phosphomannomutase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.351531	1356.68851	1.7967	0.0012206	-0.69632	-0.00047305	1.1004	0.00074756	679.351045917808	5.5139	0.17736	5.5139	5.4785	5.6559	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.054342757828	0	8.98753179496043						363	21	4	NaN	NaN	NaN	0.00011796	1	14092	99.276	61.685	1	147150			21273	162	17939	18458	21273	21273		
VQEQVHTLLSQDQAQAAR	18	Unmodified	_VQEQVHTLLSQDQAQAAR_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.52178	2021.02902	2.3674	0.0023946	-0.67875	-0.00068657	1.6886	0.0017081	1012.02280189379	6.8087	0.10637	6.8087	6.7732	6.8796	0	159	61	1.21767724410157	0.0397553411756255	1.21767724410157	491.042192055892	0	16.031793294464						416	13	5	NaN	NaN	NaN	3.8521E-10	1	32008	118.87	105.09	1	119720			21274	1567	17940	18459	21274	21274		
VQEQVHTLLSQDQAQAAR	18	Unmodified	_VQEQVHTLLSQDQAQAAR_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	674.683615	2021.02902	1.3599	0.00091752	0.57119	0.00038537	1.9311	0.0013029	675.018200950082	6.8087	0.11524	6.8087	6.7732	6.8885	0	597	91	0.924688525662974	0.0608796917865879	0.924688525662974	559.334835005652	0	36.8255162853153						727	14	4	NaN	NaN	NaN	3.201E-19	1	32009	204.33	185.13	1	233900			21275	1567	17940	18459	21275	21275		
VQESADELQK	10	Unmodified	_VQESADELQK_			0	0	0	P84085	P84085	P84085	ARF5	ADP-ribosylation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.785492	1145.55643	1.4241	0.00081713	0.089571	5.1394E-05	1.5137	0.00086853	573.785429309924	3.1641	0.27489	3.1641	3.1198	3.3947	0	675	43	0.871889544407995	0.0284815345298798	0.871889544407995	353.42638471781	0	11.5451846448574						452	32	3	NaN	NaN	NaN	0.00022635	1	7939	76.572	44.444	1	126250			21276	1483	17941	18460	21276	21276		
VQEVLLK	7	Unmodified	_VQEVLLK_			0	0	0	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	414.763104	827.511654	-0.53446	-0.00022167	-0.4139	-0.00017167	-0.94836	-0.00039335	414.762792282396	5.9929	0.15966	5.9929	5.9485	6.1081	0	747	46	0.822982596624503	0.0306327620085797	0.822982596624503	335.122098481502	0	12.4737941345356						287	19	3	NaN	NaN	NaN	0.012636	1	1278	76.833	29.998	1	67586			21277	3410	17942	18461	21277	21277		
VQEYCYDNIHFMK	13	Unmodified	_VQEYCYDNIHFMK_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	582.925331	1745.75416	0.75625	0.00044084	-0.051096	-2.9785E-05	0.70516	0.00041105	583.259666875624	9.842	0.13299	9.842	9.8066	9.9396	0	669	37	0.875957769340875	0.0244059657771015	0.875957769340875	530.427079226562	0	14.7787776944915						373	16	5	NaN	NaN	NaN	0.0015975	1	25766	53.028	49.42	1	140820			21278	3463	17943	18462	21278	21278		
VQEYCYDNIHFMK	13	Unmodified	_VQEYCYDNIHFMK_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.884358	1745.75416	2.852	0.0024923	-0.5152	-0.00045022	2.3368	0.0020421	874.385851994482	9.842	0.062073	9.842	9.8243	9.8864	0	270	22	1.14398322290989	0.0139785476457925	1.14398322290989	461.82016218565	0	5.6430680202451						140	8	4	NaN	NaN	NaN	2.5608E-05	1	25767	84.309	83.257	1	25812			21279	3463	17943	18462	21279	21279		
VQFWDSATGTLVK	13	Unmodified	_VQFWDSATGTLVK_			0	0	0	Q969X6	Q969X6	Q969X6	CIRH1A	Cirhin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.380091	1450.74563	1.3308	0.00096665	-3.6132	-0.0026246	-2.2824	-0.0016579	726.377170568584	13.309	0.19513	13.309	13.23	13.425	0	426	37	1.03977710643793	0.0241338680851122	1.03977710643793	420.424488868542	0	9.75831174900924						442	23	4	NaN	NaN	NaN	0.0061234	1	17007	29.131	23.635	1	111600			21280	2465	17944	18463	21280	21280		
VQGDYFETLLYK	12	Unmodified	_VQGDYFETLLYK_			0	0	0	Q658Y4	Q658Y4	Q658Y4	FAM91A1	Protein FAM91A1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	738.374475	1474.7344	0.88451	0.0006531	1.9063	0.0014076	2.7908	0.0020607	738.375216747394	15.251	0.11527	15.251	15.216	15.331	0	390	28	1.06389100039157	0.0180717032280036	1.06389100039157	430.10859808759	0	7.30600685370104						226	14	3	NaN	NaN	NaN	0.0028236	1	17734	32.549	28.302	1	56758			21281	2018	17945	18464	21281	21281		
VQGGALEDSQLVAGVAFK	18	Unmodified	_VQGGALEDSQLVAGVAFK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.978158	1787.94176	2.78	0.002488	0.19867	0.0001778	2.9786	0.0026658	894.978465947788	13.868	0.48768	13.868	13.77	14.258	0	270	94	1.14398322290989	0.0618455068897341	1.14398322290989	461.734297442235	0	24.9620720844605						1665	56	5	NaN	NaN	NaN	4.7743E-20	1	26924	214.32	201.73	1	590980			21282	2679	17946	18465	21282	21282		
VQGLEQAVDNFEGK	14	Unmodified	_VQGLEQAVDNFEGK_			0	0	0	O95817	O95817	O95817	BAG3	BAG family molecular chaperone regulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.38082	1532.74709	1.4085	0.0010809	0.32493	0.00024935	1.7335	0.0013302	767.381193232259	12.112	0.16849	12.112	12.05	12.219	0	438	40	1.03173026378327	0.0261612711685622	1.03173026378327	416.959917373979	0	10.5727260774948						325	20	2	NaN	NaN	NaN	9.5806E-06	1	19512	115.35	96.024	1	175460			21283	456	17947	18466	21283	21283		
VQGSDSDEEVVVATTR	16	Unmodified	_VQGSDSDEEVVVATTR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.407763	1690.80097	2.5746	0.0021791	-1.254	-0.0010614	1.3206	0.0011177	846.406875297566	6.5781	0.24826	6.5781	6.4983	6.7466	0	366	64	1.07994477139643	0.0421266461589811	1.07994477139643	436.079786851796	0	17.0106651417325						1020	29	5	NaN	NaN	NaN	1.3065E-08	1	24226	150.93	132.42	1	399430			21284	858	17948	18467	21284	21284		
VQHITDATLAIVK	13	Unmodified	_VQHITDATLAIVK_			0	0	0	Q53H12	Q53H12	Q53H12	AGK	Acylglycerol kinase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.276798	1407.80856	-0.10458	-4.9182E-05	-0.18834	-8.8572E-05	-0.29292	-0.00013775	470.276609798209	9.1681	0.079813	9.1681	9.1326	9.2125	0	693	31	0.85967808974117	0.0203637344294858	0.85967808974117	521.551156235971	0	12.3543095534495						176	10	3	NaN	NaN	NaN	0.012195	1	15710	74.849	66.375	1	43862			21285	1950	17949	18468	21285	21285		
VQHQDALQISDVVMASLLR	19	Unmodified	_VQHQDALQISDVVMASLLR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.380767	2122.12047	0.92294	0.00065379	-2.1276	-0.0015071	-1.2046	-0.00085334	708.71394425925	18.541	0.13299	18.541	18.506	18.639	0	465	100	1.01360860968299	0.0665840089000236	1.01360860968299	612.92260688399	0	40.2629219226471						811	16	5	NaN	NaN	NaN	1.8483E-05	1	33648	94.63	77.954	1	239970			21286	1780	17950	18469	21286	21286		
VQHQDALQISDVVMASLLR	19	Oxidation (M)	_VQHQDALQISDVVM(Oxidation (M))ASLLR_	VQHQDALQISDVVM(1)ASLLR	VQHQDALQISDVVM(44)ASLLR	0	1	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.712406	2138.11539	0.80105	0.00057172	-1.8715	-0.0013357	-1.0704	-0.00076396	714.045551250326	15.517	0.088695	15.517	15.473	15.562	0	603	31	0.920633820089869	0.0202735302015807	0.920633820089869	556.674294693112	0	12.2586775324013						161	11	4	NaN	NaN	NaN	0.00094539	1	33854	43.904	43.904	1	29779			21287	1780	17950	18470	21287	21287	569	
VQIAVANAQELLQR	14	Unmodified	_VQIAVANAQELLQR_			0	0	0	Q9Y5L4	Q9Y5L4	Q9Y5L4	TIMM13	Mitochondrial import inner membrane translocase subunit Tim13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.943921	1551.87329	2.0671	0.001606	0.64956	0.00050467	2.7166	0.0021107	776.944531285146	13.141	0.23056	13.141	13.096	13.327	0	321	43	1.10999792833052	0.0280245115446394	1.10999792833052	448.541250035787	0	11.3244800904996						623	27	5	NaN	NaN	NaN	2.5697E-33	1	20127	266.12	236.37	1	486280			21288	3438	17951	18471	21288	21288		
VQIEHISSLIK	11	Unmodified	_VQIEHISSLIK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	422.918722	1265.73434	-1.738	-0.00073505	-0.62211	-0.0002631	-2.3602	-0.00099815	422.918443839398	9.6647	0.12416	9.6647	9.6115	9.7356	0	789	31	0.794378096728713	0.0204545420260502	0.794378096728713	482.459895930439	0	12.4229208456677						287	15	4	NaN	NaN	NaN	0.047448	1	11392	16.992	10.301	1	142290			21289	63	17952	18472	21289	21289		
VQIEHISSLIK	11	Unmodified	_VQIEHISSLIK_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.874445	1265.73434	1.6005	0.0010145	1.6377	0.0010381	3.2382	0.0020526	633.875568367373	9.6558	0.15961	9.6558	9.6115	9.7711	0	510	28	0.983355730988811	0.0181692995022645	0.983355730988811	398.159487310701	0	7.35672630629995						354	19	4	NaN	NaN	NaN	1.926E-09	1	11395	165.39	138.44	1	225760			21290	63	17952	18472	21290	21290		
VQIFDLMDAK	10	Unmodified	_VQIFDLMDAK_			0	0	0	Q8TDX7	Q8TDX7	Q8TDX7	NEK7	Serine/threonine-protein kinase Nek7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.307549	1178.60055	0.58858	0.00034744	-0.43699	-0.00025796	0.15159	8.9483E-05	590.30746272932	15.242	0.12411	15.242	15.198	15.322	0	579	40	0.936845902828289	0.0263355149208984	0.936845902828289	379.630228932183	0	10.6717204273241						263	15	3	NaN	NaN	NaN	0.0028438	1	8846	51.872	27.022	1	76164			21291	2350	17953	18473	21291	21291		
VQIFEYNENTR	11	Unmodified	_VQIFEYNENTR_			0	0	0	Q96EE3	Q96EE3	Q96EE3	SEH1L	Nucleoporin SEH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.843873	1411.67319	1.8159	0.0012836	0.49318	0.0003486	2.3091	0.0016322	706.844446061656	9.1681	0.12415	9.1681	9.1149	9.2391	0	471	40	1.00957851518677	0.0262010489671465	1.00957851518677	408.320652709254	0	10.5969265936222						331	15	5	NaN	NaN	NaN	0.00013899	1	15809	87.895	73.132	1	85400			21292	2510	17954	18474	21292	21292		
VQIPIMLVGNK	11	Unmodified	_VQIPIMLVGNK_			0	0	0	Q15382	Q15382	Q15382	RHEB	GTP-binding protein Rheb	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.362659	1210.71076	0.76263	0.00046243	-2.5038	-0.0015182	-1.7411	-0.0010558	606.361236009925	14.311	0.15958	14.311	14.258	14.418	-1.7764E-15	600	61	0.922661313351899	0.0405246082465108	0.922661313351899	373.767592267858	0	16.4164087436054						492	19	4	NaN	NaN	NaN	0.0069229	1	9763	72.038	53.702	1	168140			21293	1837	17955	18475	21293	21293		
VQISPDSGGLPER	13	Unmodified	_VQISPDSGGLPER_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.851698	1353.68884	2.1057	0.0014273	-0.63859	-0.00043287	1.4671	0.00099447	677.851097680896	7.2875	0.24826	7.2875	7.2077	7.456	0	531	46	0.969216233931596	0.0303157001501234	0.969216233931596	392.159121504375	0	12.2661774766574						923	29	6	NaN	NaN	NaN	0.00020561	1	14015	92.707	62.952	1	481660			21294	2446	17956	18476	21294	21294		
VQLDLAETDLSQGVAR	16	Unmodified	_VQLDLAETDLSQGVAR_			0	0	0	Q9BSJ8	Q9BSJ8	Q9BSJ8	ESYT1	Extended synaptotagmin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.95214	1713.88973	2.921	0.0025061	-0.13148	-0.0001128	2.7895	0.0023933	857.952383384205	12.777	0.21284	12.777	12.724	12.937	0	297	67	1.12600091227925	0.0439961143381138	1.12600091227925	454.627370480481	0	17.7636070759548						586	25	3	NaN	NaN	NaN	1.3362E-05	1	24885	75.012	67.047	1	300950			21295	2726	17957	18477	21295	21295		
VQLDTIQGELNAPTQFK	17	Unmodified	_VQLDTIQGELNAPTQFK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	951.501997	1900.98944	2.0238	0.0019257	0.05413	5.1505E-05	2.078	0.0019772	951.501861419292	13.478	0.11528	13.478	13.442	13.558	0	213	40	1.18187287897418	0.0258924572936763	1.18187287897418	476.808933506979	0	10.4459245725212						335	14	4	NaN	NaN	NaN	4.1137E-10	1	29625	129.04	110.95	1	88587			21296	2131	17958	18478	21296	21296		
VQLEHVQTR	9	Unmodified	_VQLEHVQTR_			0	0	0	O75150	O75150	O75150	RNF40	E3 ubiquitin-protein ligase BRE1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	370.540245	1108.59891	-0.43496	-0.00016117	-1.3451	-0.00049841	-1.78	-0.00065958	370.539565082406	3.1552	0.10643	3.1552	3.1286	3.2351	0	852	22	0.751366682244005	0.0143591237595029	0.751366682244005	457.033441224425	0	8.73421712708023						85	13	3	NaN	NaN	NaN	0.036471	1	6957	25.254	17.607	1	15881			21297	305	17959	18479	21297	21297		
VQLLSQYDNEK	11	Unmodified	_VQLLSQYDNEK_			0	0	0	O95466	O95466	O95466	FMNL1	Formin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.840799	1335.66705	1.572	0.0010514	1.1637	0.00077834	2.7357	0.0018298	668.841578826132	7.9261	0.088652	7.9261	7.8906	7.9793	0	450	34	1.02367897599655	0.0221456308390058	1.02367897599655	414.252021089786	0	8.96166918387252						200	11	3	NaN	NaN	NaN	0.00073716	1	13460	51.872	36.291	1	48779			21298	437	17960	18480	21298	21298		
VQLTPGQTEVK	11	Unmodified	_VQLTPGQTEVK_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.335153	1198.65575	1.3653	0.00081964	-1.7916	-0.0010756	-0.42632	-0.00025593	600.334229506744	5.5494	0.10639	5.5494	5.5051	5.6115	0	570	40	0.942920803299286	0.0263172834355764	0.942920803299286	382.017945796266	0	10.6622682645447						222	13	3	NaN	NaN	NaN	0.071954	1	9430	30.918	22.736	1	57112			21299	1991	17961	18481	21299	21299		
VQLTTCIHHIIK	12	Unmodified	_VQLTTCIHHIIK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.278144	1461.8126	-0.88218	-0.00043075	0.01812	8.8474E-06	-0.86406	-0.0004219	488.278463824137	7.6156	0.1863	7.6156	7.5713	7.7576	0	804	37	0.78414869089473	0.0245591241108515	0.78414869089473	475.558069992835	0	14.8942283504225						508	22	5	NaN	NaN	NaN	0.0029021	1	17332	60.547	38.544	1	286120			21300	429	17962	18482	21300	21300		
VQLTTCIHHIIK	12	Unmodified	_VQLTTCIHHIIK_			0	0	0	O95373	O95373	O95373	IPO7	Importin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.913578	1461.8126	2.168	0.0015868	0.12326	9.0212E-05	2.2913	0.001677	731.913831983098	7.6156	0.12421	7.6156	7.5801	7.7044	0	357	37	1.08596037261705	0.0240574350512286	1.08596037261705	439.066857774492	0	9.72671073494291						310	15	4	NaN	NaN	NaN	4.6955E-05	1	17334	92.445	69.547	1	99557			21301	429	17962	18482	21301	21301		
VQMDMLQVLLR	11	Unmodified	_VQMDMLQVLLR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.370158	1344.72576	0.34107	0.00022966	-1.4663	-0.00098735	-1.1252	-0.00075769	673.369641331274	18.523	0.097542	18.523	18.488	18.585	0	504	46	0.987393073566096	0.0302905481075687	0.987393073566096	399.540655194513	0	12.2568263451454						269	12	4	NaN	NaN	NaN	0.0023024	1	13752	72.922	57.043	1	71735			21302	878	17963	18483	21302	21302		
VQQACEMVMDILR	13	Unmodified	_VQQACEMVMDILR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	531.591294	1591.75205	-2.4899	-0.0013236	1.3707	0.00072867	-1.1191	-0.00059492	531.591781030467	16.28	0.044338	16.28	16.271	16.315	0	750	16	0.820941264895493	0.0102066589410985	0.820941264895493	497.490686431741	0	6.18523879833003						35	6	2	NaN	NaN	NaN	0.037713	1	21319	28.328	26.026	1	4882.7			21303	2446	17965	18484	21303	21303		
VQQACEMVMDILR	13	Unmodified	_VQQACEMVMDILR_			0	0	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.883303	1591.75205	0.79807	0.00063597	0.77951	0.00062118	1.5776	0.0012571	796.885014638607	16.298	0.20393	16.298	16.2	16.404	0	399	43	1.0578662689527	0.028121237288756	1.0578662689527	427.380546653725	0	11.3610482891625						612	24	5	NaN	NaN	NaN	0.00037126	1	21320	82.437	63.93	1	172510			21304	2446	17965	18484	21304	21304		
VQQACEMVMDILR	13	Oxidation (M)	_VQQACEM(Oxidation (M))VMDILR_	VQQACEM(0.728)VM(0.272)DILR	VQQACEM(4.3)VM(-4.3)DILR	0	1	0	Q92945	Q92945	Q92945	KHSRP	Far upstream element-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.880761	1607.74697	1.4405	0.0011594	2.2365	0.0018001	3.677	0.0029596	804.882946582074	13.132	0.18629	13.132	13.017	13.203	0	369	40	1.07793901817685	0.0260891796066893	1.07793901817685	435.452607515594	0	10.5391873715547						205	22	3	NaN	NaN	NaN	0.0017363	1	21844	68.548	65.67	2	46347			21305	2446	17965	18485	21305	21305	601	
VQQLLHICSEHFDSK	15	Unmodified	_VQQLLHICSEHFDSK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.305199	1839.89377	0.94303	0.00057931	-0.35158	-0.00021597	0.59145	0.00036333	614.304787292117	7.9527	0.21295	7.9527	7.8729	8.0858	0	651	31	0.888155670855968	0.0203213763976985	0.888155670855968	537.5967786195	0	12.3004410679359						548	25	5	NaN	NaN	NaN	9.4607E-05	1	28221	79.795	61.697	1	244160			21306	1642	17966	18486	21306	21306		
VQQLLHICSEHFDSK	15	Unmodified	_VQQLLHICSEHFDSK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.95416	1839.89377	2.8039	0.0025823	-2.0754	-0.0019114	0.72848	0.00067089	921.454348221831	7.9615	0.14188	7.9615	7.8818	8.0237	0	270	40	1.14398322290989	0.0259637344402126	1.14398322290989	461.63395407044	0	10.477200322556						327	17	4	NaN	NaN	NaN	1.8715E-06	1	28222	96.313	87.157	1	80789			21307	1642	17966	18486	21307	21307		
VQQLVPK	7	Unmodified	_VQQLVPK_			0	0	0	O43707	O43707	O43707	ACTN4	Alpha-actinin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	406.255446	810.496338	-0.58142	-0.00023621	1.3819	0.00056139	0.80045	0.00032519	406.256025240063	4.0066	0.20396	4.0066	3.9622	4.1662	0	810	28	0.78005493425781	0.0184231892400387	0.78005493425781	317.750389403518	0	7.50456832972515						230	24	2	NaN	NaN	NaN	0.022192	1	1097	61.494	54.144	1	60243			21308	221	17967	18487	21308	21308		
VQQTVQDLFGR	11	Unmodified	_VQQTVQDLFGR_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.843676	1289.6728	1.9275	0.0012449	2.7728	0.0017908	4.7003	0.0030357	645.845589947006	10.64	0.40788	10.64	10.507	10.915	0	534	64	0.967195187796614	0.0424361193214464	0.967195187796614	391.537638375369	0	17.178888140238						1244	47	5	NaN	NaN	NaN	8.3058E-17	1	12062	200.11	147.52	1	1434000			21309	1007	17968	18488	21309	21309		
VQSDGQIVLVDDWIK	15	Unmodified	_VQSDGQIVLVDDWIK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.954152	1713.89375	2.1713	0.0018628	-0.052414	-4.4969E-05	2.1189	0.0018179	857.953962494328	16.174	0.36354	16.174	15.996	16.36	0	315	55	1.11400032671325	0.0360215991015307	1.11400032671325	449.782077320864	0	14.5438643811784						1006	42	4	NaN	NaN	NaN	1.1548E-11	1	24886	158.02	139.51	1	375170			21310	1575	17969	18489	21310	21310		
VQSFQMK	7	Unmodified	_VQSFQMK_			0	0	0	Q96QK1	Q96QK1	Q96QK1	VPS35	Vacuolar protein sorting-associated protein 35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	434.223288	866.432024	-1.3264	-0.00057594	0.95151	0.00041317	-0.37486	-0.00016277	434.224501486667	4.4677	0.20392	4.4677	4.4056	4.6095	0	789	31	0.794378096728713	0.0204545420260502	0.794378096728713	323.237342264576	0	8.32307918479466						303	24	3	NaN	NaN	NaN	0.058859	1	1804	51.456	31.969	1	72002			21311	2605	17970	18490	21311	21311		
VQSGSESVIQEYVDLR	16	Unmodified	_VQSGSESVIQEYVDLR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.95488	1807.89521	1.868	0.0016905	0.13562	0.00012273	2.0037	0.0018132	905.456238970274	14.054	0.2571	14.054	13.974	14.232	0	282	49	1.13599383354359	0.0319707579937258	1.13599383354359	458.470674537708	0	12.9029353417725						946	30	6	NaN	NaN	NaN	1.245E-08	1	27429	115.79	90.178	1	287970			21312	1816	17971	18491	21312	21312		
VQSLQATFGTFESILR	16	Unmodified	_VQSLQATFGTFESILR_			0	0	0	Q07065	Q07065	Q07065	CKAP4	Cytoskeleton-associated protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	898.980701	1795.94685	1.1374	0.0010225	-3.6658	-0.0032954	-2.5283	-0.0022729	898.976973049123	19.339	0.12422	19.339	19.277	19.401	0	255	64	1.15396378101328	0.041912601110381	1.15396378101328	465.746684843711	0	16.9161765226253						376	15	6	NaN	NaN	NaN	1.8453E-12	1	27116	124.62	106.53	1	166660			21313	1567	17972	18492	21313	21313		
VQSNCPLSPTEYLGEDK	17	Unmodified	_VQSNCPLSPTEYLGEDK_			0	0	0	O00534	O00534	O00534	VWA5A	von Willebrand factor A domain-containing protein 5A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	968.95148	1935.88841	2.5238	0.0024455	1.6078	0.0015578	4.1316	0.0040033	968.953310348192	11.137	0.1596	11.137	11.021	11.181	0	258	31	1.15196821829984	0.0199652358426974	1.15196821829984	464.683628622641	0	8.05362343362555						254	19	3	NaN	NaN	NaN	0.00013582	1	30434	53.363	48.269	1	50395			21314	89	17973	18493	21314	21314		
VQSTADIFGDEEGDLFK	17	Unmodified	_VQSTADIFGDEEGDLFK_			0	0	0	Q641Q2;Q9Y4E1	Q641Q2	Q641Q2	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.938896	1869.86324	1.9588	0.0018333	0.7105	0.00066498	2.6693	0.0024983	936.441323039783	15.544	0.10642	15.544	15.508	15.615	-1.7764E-15	204	34	1.18784641916898	0.021902983606175	1.18784641916898	479.276663715486	0	8.83749678306611						310	13	4	NaN	NaN	NaN	1.8398E-06	1	28928	63.79	48.174	1	83694			21315	2016	17974	18494	21315	21315		
VQSVETVEGCTHEVALPAEEDYLPLK	26	Unmodified	_VQSVETVEGCTHEVALPAEEDYLPLK_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	971.811061	2912.41135	2.3585	0.002292	-0.32526	-0.00031609	2.0332	0.0019759	972.145144239478	13.939	0.079847	13.939	13.895	13.974	0	399	82	1.0578662689527	0.0542301088337773	1.0578662689527	638.555921287319	0	32.734720941757						573	10	5	NaN	NaN	NaN	2.1813E-06	1	38093	43.727	42.183	1	106970			21316	1047	17975	18495	21316	21316		
VQTDAFVSNELDDPDDLQCK	20	Unmodified	_VQTDAFVSNELDDPDDLQCK_			0	0	0	Q9UI10	Q9UI10	Q9UI10	EIF2B4	Translation initiation factor eIF-2B subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1155.01554	2308.01652	0.43089	0.00049769	0.90943	0.0010504	1.3403	0.0015481	1155.51838918097	12.334	0.070932	12.334	12.307	12.378	0	114	25	1.24744674793813	0.0158607512262854	1.24744674793813	502.620108939893	0	6.39059945637013						98	9	3	NaN	NaN	NaN	5.9988E-06	1	35697	67.927	65.538	1	14736			21317	3230	17976	18496	21317	21317		
VQTEVLQK	8	Unmodified	_VQTEVLQK_			0	0	0	Q99848	Q99848	Q99848	EBNA1BP2	Probable rRNA-processing protein EBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	472.7742	943.533846	0.89387	0.0004226	0.42575	0.00020128	1.3196	0.00062388	472.774389382157	3.6962	0.18617	3.6962	3.6608	3.847	0	729	52	0.835224628594324	0.0346785357813113	0.835224628594324	339.424779072557	0	14.0929205667001						369	22	3	NaN	NaN	NaN	0.0016165	1	3132	101.41	61.209	1	161390			21318	2680	17977	18497	21318	21318		
VQTGEEGMPLSTIR	14	Unmodified	_VQTGEEGMPLSTIR_			0	0	0	Q00534	Q00534	Q00534	CDK6	Cyclin-dependent kinase 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.385048	1516.75554	1.2843	0.00097528	0.13842	0.00010511	1.4227	0.0010804	759.385445527926	9.31	0.26606	9.31	9.2125	9.4785	0	447	40	1.02569221487577	0.026172110670738	1.02569221487577	414.558838479585	0	10.5781048572493						507	31	3	NaN	NaN	NaN	0.00034927	1	19031	69.327	56.152	1	140710			21319	1500	17978	18498	21319	21319		
VQTLNEQDWER	11	Unmodified	_VQTLNEQDWER_			0	0	0	Q13136	Q13136	Q13136	PPFIA1	Liprin-alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.338955	1416.66336	1.443	0.0010236	2.4608	0.0017456	3.9039	0.0027692	709.341468212704	7.6068	0.22176	7.6068	7.5358	7.7576	0	489	40	0.997481546940468	0.026215536116896	0.997481546940468	403.414279844942	0	10.6024233288176						240	26	3	NaN	NaN	NaN	0.03952	1	15984	27.589	23.696	1	53462			21320	1632	17979	18499	21320	21320		
VQTLQFHPFEAQTLISGSYDK	21	Unmodified	_VQTLQFHPFEAQTLISGSYDK_			0	0	0	Q13610	Q13610	Q13610	PWP1	Periodic tryptophan protein 1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	803.741018	2408.20123	1.1147	0.00089592	-0.010784	-8.6678E-06	1.1039	0.00088726	804.075182652809	15.021	0.1064	15.021	14.976	15.083	0	465	40	1.01360860968299	0.0261938098951453	1.01360860968299	612.449354597452	0	15.8269985194258						394	13	5	NaN	NaN	NaN	2.3672E-08	1	36393	100.98	90.655	1	118930			21321	1691	17980	18500	21321	21321		
VQTLSNQPLLK	11	Unmodified	_VQTLSNQPLLK_			0	0	0	Q8N163	Q8N163	Q8N163	CCAR2	Cell cycle and apoptosis regulator protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.86662	1239.71869	1.8994	0.0011793	0.11582	7.191E-05	2.0152	0.0012512	620.866720864082	7.9881	0.14196	7.9881	7.9438	8.0858	0	531	40	0.969216233931596	0.0262772407481359	0.969216233931596	392.523295174495	0	10.6420309167869						277	17	2	NaN	NaN	NaN	0.0032303	1	10621	65.404	33.452	1	130800			21322	2237	17981	18501	21322	21322		
VQVALEELQDLK	12	Unmodified	_VQVALEELQDLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.887749	1383.76095	1.2217	0.0008465	-1.1376	-0.00078824	0.084087	5.8263E-05	692.888009255016	13.637	0.15961	13.637	13.567	13.726	0	453	40	1.02166545906632	0.0261757253352226	1.02166545906632	413.290035214635	0	10.5887561819398						446	19	4	NaN	NaN	NaN	2.7152E-05	1	14953	106	90.124	1	215670			21323	1737	17982	18502	21323	21323		
VQVMVPEAETR	11	Unmodified	_VQVMVPEAETR_			0	0	0	Q5JPE7;P69849;Q15155	Q5JPE7;Q15155	Q5JPE7	NOMO2;NOMO3;NOMO1	Nodal modulator 2;Nodal modulator 3;Nodal modulator 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	629.826637	1257.63872	1.3066	0.00082292	0.68302	0.00043018	1.9896	0.0012531	629.829234319411	7.527	0.20394	7.527	7.4383	7.6422	0	567	76	0.944945209309785	0.0505751639210029	0.944945209309785	382.633699296377	0	20.4792424713694						504	24	4	NaN	NaN	NaN	0.00085901	1	11141	70.389	59.029	1	154180			21324	1452;1818	17983	18503	21324	21324		
VQVPNCDEIFYAGTGNLLLR	20	Unmodified	_VQVPNCDEIFYAGTGNLLLR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1140.07808	2278.1416	0.4071	0.00046413	-0.44183	-0.00050372	-0.034723	-3.9587E-05	1140.57945676577	17.521	0.13302	17.521	17.468	17.601	0	81	49	1.2692388538616	0.0316694077427442	1.2692388538616	511.440707852857	0	12.7612105979509						604	16	5	NaN	NaN	NaN	1.8391E-05	1	35448	38.668	38.27	1	168980			21325	1241	17984	18504	21325	21325		
VQVPNCDEIFYAGTGNLLLR	20	Unmodified	_VQVPNCDEIFYAGTGNLLLR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.387811	2278.1416	0.9782	0.00074381	0.92552	0.00070376	1.9037	0.0014476	760.388588477324	17.513	0.097552	17.513	17.477	17.575	0	423	34	1.04178812298108	0.0221242386339204	1.04178812298108	629.682216212007	0	13.372430830893						211	12	3	NaN	NaN	NaN	0.012781	1	35449	45.17	43.546	1	59315			21326	1241	17984	18504	21326	21326		
VQVPNMQDK	9	Unmodified	_VQVPNMQDK_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.768591	1057.52263	0.3636	0.00019262	0.72938	0.0003864	1.093	0.00057902	529.769744050984	5.4342	0.3103	5.4342	5.3012	5.6115	0	681	58	0.867820189810857	0.0386508360142306	0.867820189810857	352.124911995053	0	15.6828826868069						538	36	3	NaN	NaN	NaN	0.0066121	1	5653	65.156	52.329	1	140390			21327	1852	17985	18505	21327	21327		
VQVQDNEGCPVEALVK	16	Unmodified	_VQVQDNEGCPVEALVK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.946001	1783.87745	2.7788	0.0024813	-1.9957	-0.0017821	0.78307	0.00069924	892.945072056183	10.383	0.2217	10.383	10.285	10.507	0	309	49	1.11800162319566	0.0320103814139743	1.11800162319566	451.255528714449	0	12.9202509993012						1003	26	5	NaN	NaN	NaN	4.8026E-18	1	26797	146.34	138.38	1	360480			21328	792	17986	18506	21328	21328		
VQVSVLK	7	Unmodified	_VQVSVLK_			0	0	0	P00966	P00966	P00966	ASS1	Argininosuccinate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	386.749996	771.485439	-1.295	-0.00050085	-0.56293	-0.00021771	-1.858	-0.00071857	386.749664691428	5.7889	0.15959	5.7889	5.7534	5.913	0	837	37	0.761618911097395	0.024600209838444	0.761618911097395	310.501235284515	0	10.029156881214						300	19	3	NaN	NaN	NaN	0.017298	1	776	73.637	39.824	1	110860			21329	488	17987	18507	21329	21329		
VQYTETEPYHNYR	13	Unmodified	_VQYTETEPYHNYR_			0	0	0	Q86VM9	Q86VM9	Q86VM9	ZC3H18	Zinc finger CCCH domain-containing protein 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	850.389176	1698.7638	2.6877	0.0022856	-1.6854	-0.0014332	1.0024	0.00085239	850.386673064443	5.0085	0.070933	5.0085	4.9642	5.0351	0	369	19	1.07793901817685	0.0120353492796614	1.07793901817685	435.253281115184	0	4.85966754612872						90	9	3	NaN	NaN	NaN	0.059702	1	24453	31.04	28.904	1	15216			21330	2173	17988	18508	21330	21330		
VRIDEYDYSK	10	Unmodified	_VRIDEYDYSK_			0	0	1	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	644.314417	1286.61428	2.0087	0.0012943	-2.735	-0.0017622	-0.7263	-0.00046797	644.312771956804	5.5317	0.19517	5.5317	5.4519	5.6471	0	540	49	0.963152256458504	0.0323568915973725	0.963152256458504	389.910833248135	0	13.0989700532302						596	23	3	NaN	NaN	NaN	0.0091471	1	11955	51.454	40.094	1	193080			21331	919	17989	18509	21331	21331		
VRPAELEQFESTIGFK	16	Unmodified	_VRPAELEQFESTIGFK_			0	0	1	O43491	O43491	O43491	EPB41L2	Band 4.1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	617.659748	1849.95741	-1.1196	-0.00069152	0.098942	6.1112E-05	-1.0206	-0.00063041	617.659525571718	14.161	0.10641	14.161	14.116	14.223	0	738	43	0.829104889055312	0.0285806380781382	0.829104889055312	501.833189018252	0	17.2990328971172						324	13	4	NaN	NaN	NaN	0.00022763	1	28495	80.623	71.817	1	71824			21332	206	17990	18510	21332	21332		
VRTDITYPAGFMDVISIDK	19	Unmodified	_VRTDITYPAGFMDVISIDK_			0	0	1	P62701	P62701	P62701	RPS4X	40S ribosomal protein S4, X isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.369757	2140.08744	-0.18795	-0.00013427	-2.5157	-0.0017971	-2.7036	-0.0019314	714.702780110833	16.466	0.16848	16.466	16.395	16.564	0	636	37	0.898312834727904	0.0243687449926693	0.898312834727904	543.174369133665	0	14.7348197379163						488	20	4	NaN	NaN	NaN	3.1074E-06	1	33885	65.421	64.326	1	118880			21333	1394	17991	18511	21333	21333		
VSAEAVTTTLHQVTR	15	Unmodified	_VSAEAVTTTLHQVTR_			0	0	0	Q9UJX6	Q9UJX6	Q9UJX6	ANAPC2	Anaphase-promoting complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	806.936293	1611.85803	1.835	0.0014807	-1.1518	-0.00092939	0.68324	0.00055133	807.436398306006	9.2923	0.062124	9.2923	9.2568	9.3189	0	273	64	1.14198628764525	0.0419760654050894	1.14198628764525	461.315602369648	0	16.9566080669717						132	8	2	NaN	NaN	NaN	0.0057149	1	21958	39.166	32.419	1	26798			21334	3255	17992	18512	21334	21334		
VSALDLAVLDQVEAR	15	Unmodified	_VSALDLAVLDQVEAR_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.629788	1597.86754	-1.1989	-0.00063979	-1.1095	-0.00059207	-2.3084	-0.0012319	533.629023615966	16.386	0.088649	16.386	16.351	16.44	0	678	22	0.869855008346864	0.0142437305757047	0.869855008346864	527.115062076533	0	8.63142116165182						132	11	3	NaN	NaN	NaN	0.034174	1	21518	58.476	36.472	1	31673			21335	1684	17993	18513	21335	21335		
VSALDLAVLDQVEAR	15	Unmodified	_VSALDLAVLDQVEAR_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.941044	1597.86754	1.0822	0.00086573	1.6671	0.0013336	2.7494	0.0021993	799.942510581859	16.386	0.23053	16.386	16.271	16.502	0	306	70	1.12000185836644	0.0459864455823558	1.12000185836644	452.468534381898	0	18.578022419025						692	27	4	NaN	NaN	NaN	2.4241E-07	1	21519	130.99	109.63	1	244600			21336	1684	17993	18513	21336	21336		
VSALNSVHCEHVEDEGESR	19	Unmodified	_VSALNSVHCEHVEDEGESR_			0	0	0	Q13085	Q13085	Q13085	ACACA	Acetyl-CoA carboxylase 1;Biotin carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.655396	2152.94436	2.2974	0.0016511	-0.157	-0.00011283	2.1404	0.0015382	719.323893289218	4.5563	0.097518	4.5563	4.4943	4.5918	0	540	43	0.963152256458504	0.028292695105214	0.963152256458504	582.35779745641	0	17.1068192958005						186	12	4	NaN	NaN	NaN	0.0012319	1	34075	44.16	43.855	1	38012			21337	1625	17994	18514	21337	21337		
VSAPEVSVGHK	11	Unmodified	_VSAPEVSVGHK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	370.536501	1108.58767	0.17181	6.3664E-05	-0.4193	-0.00015537	-0.24749	-9.1704E-05	370.536288860661	4.1041	0.20394	4.1041	4.0154	4.2194	0	873	25	0.737001551771189	0.0164275975707774	0.737001551771189	448.295620975232	0	9.99240779944694						309	24	3	NaN	NaN	NaN	0.057333	1	6953	22.044	9.2163	1	87000			21338	1584	17995	18515	21338	21338		
VSAPGVQGDVK	11	Unmodified	_VSAPGVQGDVK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.787838	1055.56112	1.4633	0.00077375	-0.22845	-0.0001208	1.2348	0.00065295	528.788207163301	4.3435	0.25713	4.3435	4.2637	4.5209	0	666	40	0.877991458330206	0.0264306247374108	0.877991458330206	356.260498860061	0	10.7246915272286						472	30	3	NaN	NaN	NaN	0.021894	1	5613	32.549	27.24	1	140840			21339	1584	17996	18516	21339	21339		
VSASPLLYTLIEK	13	Unmodified	_VSASPLLYTLIEK_			0	0	0	P02786	P02786	P02786	TFRC	Transferrin receptor protein 1;Transferrin receptor protein 1, serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.416143	1432.81773	1.1444	0.00082103	1.218	0.00087379	2.3624	0.0016948	717.417279202566	16.413	0.33694	16.413	16.307	16.644	0	453	88	1.02166545906632	0.0583517486684779	1.02166545906632	413.150009721799	0	23.5967902366961						1314	39	4	NaN	NaN	NaN	1.9917E-05	1	16486	105.94	87.436	1	1718800			21340	495	17997	18517	21340	21340		
VSASSPSLAVASQSDSK	17	Unmodified	_VSASSPSLAVASQSDSK_			0	0	0	P04150	P04150	P04150	NR3C1	Glucocorticoid receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.907399	1619.80024	2.923	0.0023703	-4.3664	-0.0035407	-1.4434	-0.0011704	810.902635158787	6.0017	0.044323	6.0017	5.984	6.0283	0	372	19	1.07593298845566	0.0120353492796614	1.07593298845566	434.614633775161	0	4.86158429536033						65	6	3	NaN	NaN	NaN	0.0038789	1	22180	35.246	32.944	1	10799			21341	508	17998	18518	21341	21341		
VSCLGVTDDGMAVATGSWDSFLK	23	Unmodified	_VSCLGVTDDGMAVATGSWDSFLK_			0	0	0	P62873;P62879	P62873;P62879	P62873	GNB1;GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1208.5616	2415.10865	0.26894	0.00032503	0.20104	0.00024297	0.46998	0.00056801	1209.06350671535	18.488	0.053269	18.488	18.47	18.523	0	63	37	1.28111162701928	0.0237422986363811	1.28111162701928	516.047307203518	0	9.56368595813382						171	7	4	NaN	NaN	NaN	2.336E-06	1	36419	73.262	73.007	1	27434			21342	1408;1410	17999	18519	21342	21342		
VSCLGVTDDGMAVATGSWDSFLK	23	Unmodified	_VSCLGVTDDGMAVATGSWDSFLK_			0	0	0	P62873;P62879	P62873;P62879	P62873	GNB1;GNB2	Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	806.043492	2415.10865	1.1198	0.00090257	1.1643	0.00093845	2.284	0.001841	806.379638971543	18.488	0.062136	18.488	18.461	18.523	0	396	22	1.05987478976334	0.0140577073592631	1.05987478976334	640.394105678817	0	8.49390231674442						160	8	5	NaN	NaN	NaN	0.027555	1	36420	21.823	21.518	1	32443			21343	1408;1410	17999	18519	21343	21343		
VSDATGQMNLTK	12	Unmodified	_VSDATGQMNLTK_			0	0	0	P40121	P40121	P40121	CAPG	Macrophage-capping protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.813727	1263.6129	2.6115	0.0016526	-1.9642	-0.001243	0.6473	0.00040962	632.812924286876	5.0706	0.26602	5.0706	5.0263	5.2923	0	573	55	0.940896116921038	0.0364317543257808	0.940896116921038	380.974561009299	0	14.7514389330058						704	31	5	NaN	NaN	NaN	4.5367E-11	1	11319	123.42	100.37	1	219460			21344	1014	18000	18520	21344	21344		
VSDEVGFGLEHVSR	14	Unmodified	_VSDEVGFGLEHVSR_			0	0	0	Q6VY07	Q6VY07	Q6VY07	PACS1	Phosphofurin acidic cluster sorting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.923083	1529.74742	-0.61306	-0.00031323	1.6087	0.00082191	0.99561	0.00050868	511.258552874919	8.7955	0.15084	8.7955	8.7245	8.8753	0	726	49	0.837263974740672	0.0326227467021474	0.837263974740672	507.559378332694	0	19.7762970045084						261	18	3	NaN	NaN	NaN	0.0068334	1	19424	27.357	26.996	1	57301			21345	2090	18001	18521	21345	21345		
VSDGGSSSTDFK	12	Unmodified	_VSDGGSSSTDFK_			0	0	0	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.764757	1185.51496	1.2755	0.00075735	6.4524	0.0038312	7.7279	0.0045886	593.768563727524	2.8627	0.18623	2.8627	2.8272	3.0134	0	654	49	0.886123392477847	0.0325322604149904	0.886123392477847	359.052111699388	0	13.1818851635256						345	22	3	NaN	NaN	NaN	0.038078	1	9012	27.378	14.782	1	73609			21346	2149	18002	18522	21346	21346		
VSDILHSIFSSYK	13	Unmodified	_VSDILHSIFSSYK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.264558	1494.77184	-1.2993	-0.00064868	-1.082	-0.00054018	-2.3812	-0.0011889	499.263934221267	15.375	0.17746	15.375	15.322	15.5	0	759	55	0.814815566123307	0.0367721039303898	0.814815566123307	494.054399111165	0	22.2963581781067						766	21	5	NaN	NaN	NaN	0.001315	1	18386	47.361	38.384	1	426000			21347	74	18003	18523	21347	21347		
VSDILHSIFSSYK	13	Unmodified	_VSDILHSIFSSYK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.393199	1494.77184	1.3083	0.00097911	2.1309	0.0015948	3.4392	0.0025739	748.394502876866	15.375	0.18633	15.375	15.313	15.5	0	387	58	1.06589869032374	0.0381461250343338	1.06589869032374	430.866563792171	0	15.4197485790493						820	22	5	NaN	NaN	NaN	6.9462E-17	1	18388	180.81	162.3	1	361760			21348	74	18003	18523	21348	21348		
VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR	39	Unmodified	_VSDTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFR_			0	0	0	P04350;P07437;P68371;Q9BVA1;Q9BUF5	P04350;P07437;P68371;Q9BVA1;Q9BUF5	P68371	TUBB4A;TUBB;TUBB4B;TUBB2B;TUBB6	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain;Tubulin beta-2B chain;Tubulin beta-6 chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1531.70726	4592.09994	0.80613	0.0012347	-0.61374	-0.00094007	0.19239	0.00029468	1532.37399013147	19.499	0.06205	19.499	19.481	19.543	0	84	37	1.26725910986255	0.0237520526896609	1.26725910986255	763.619199625808	0	14.3124032987351						100	8	2	NaN	NaN	NaN	0.063034	1	38788	1.9516	1.9472	1	28113			21349	1449;560;512;2761;2745	18004	18524	21349	21349		
VSEEAESQQQWDTSK	15	Unmodified	_VSEEAESQQQWDTSK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	876.38957	1750.76459	3.1226	0.0027366	-1.7462	-0.0015304	1.3764	0.0012062	876.388224162243	4.7958	0.1419	4.7958	4.7603	4.9021	0	393	67	1.0618830335572	0.0442149235181339	1.0618830335572	428.667075207639	0	17.8489356606026						409	17	4	NaN	NaN	NaN	3.6017E-17	1	25903	163.93	135.29	1	97804			21350	1511	18005	18525	21350	21350		
VSEEIEDIIK	10	Unmodified	_VSEEIEDIIK_			0	0	0	O75223	O75223	O75223	GGCT	Gamma-glutamylcyclotransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.813719	1173.61288	1.0857	0.0006382	-0.58585	-0.00034437	0.49986	0.00029383	587.814016360559	11.216	0.23946	11.216	11.11	11.35	0	615	76	0.912521036363781	0.0506873695169106	0.912521036363781	369.791447458517	0	20.5406286480949						863	28	4	NaN	NaN	NaN	0.00079148	1	8702	74.424	47.968	1	498660			21351	314	18006	18526	21351	21351		
VSEFNVSSEGSGEK	14	Unmodified	_VSEFNVSSEGSGEK_			0	0	0	Q9BVJ6	Q9BVJ6	Q9BVJ6	UTP14A	U3 small nucleolar RNA-associated protein 14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.333535	1454.65252	1.3118	0.00095541	0.8604	0.00062666	2.1722	0.0015821	728.334943630088	5.3987	0.15072	5.3987	5.3455	5.4962	0	504	34	0.987393073566096	0.0222007820488888	0.987393073566096	399.233332191297	0	8.9764577369574						336	18	4	NaN	NaN	NaN	0.00012116	1	17090	81.48	68.206	1	92481			21352	2765	18007	18527	21352	21352		
VSELHLEVK	9	Unmodified	_VSELHLEVK_			0	0	0	Q9UNF0	Q9UNF0	Q9UNF0	PACSIN2	Protein kinase C and casein kinase substrate in neurons protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.300581	1052.58661	1.0719	0.00056523	-1.0436	-0.00055031	0.028293	1.4919E-05	527.299997893185	6.1702	0.18622	6.1702	6.0993	6.2855	0	654	55	0.886123392477847	0.0365683394174512	0.886123392477847	359.573262807872	0	14.8387879514504						442	22	4	NaN	NaN	NaN	0.00024822	1	5547	103.8	77.581	1	154930			21353	3294	18008	18528	21353	21353		
VSELYDVTWEEMR	13	Unmodified	_VSELYDVTWEEMR_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.882338	1655.75012	2.3949	0.001985	3.7115	0.0030764	6.1064	0.0050615	828.88695130084	14.205	0.088675	14.205	14.169	14.258	0	351	49	1.08996939197032	0.0320765843324038	1.08996939197032	440.203431053521	0	12.954696327827						274	11	4	NaN	NaN	NaN	0.0025813	1	23207	77.358	64.184	1	62702			21354	1788	18009	18529	21354	21354		
VSEYVPEIVNFVQK	14	Unmodified	_VSEYVPEIVNFVQK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	825.940513	1649.86647	2.1654	0.0017885	-3.0568	-0.0025247	-0.89138	-0.00073623	825.93821714828	15.562	0.15961	15.562	15.5	15.659	0	363	49	1.08195024817156	0.0320854269031785	1.08195024817156	436.977713844388	0	12.9586517675524						423	19	4	NaN	NaN	NaN	0.029064	1	23049	30.349	26.366	1	94818			21355	1137	18010	18530	21355	21355		
VSFADPIYQAGLADDIDRR	19	Unmodified	_VSFADPIYQAGLADDIDRR_			0	0	1	Q5UIP0	Q5UIP0	Q5UIP0	RIF1	Telomere-associated protein RIF1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	708.023637	2121.04908	1.0068	0.00071285	2.6943	0.0019076	3.7011	0.0026205	708.359965413291	14.054	0.070921	14.054	14.019	14.09	0	456	25	1.01965166402748	0.0161092490285764	1.01965166402748	616.578806771323	0	9.74119093258707						174	9	4	NaN	NaN	NaN	0.017679	1	33636	46.206	41.608	1	42869			21356	2005	18011	18531	21356	21356		
VSFASTDEQDAMDGELVCR	19	Unmodified	_VSFASTDEQDAMDGELVCR_			0	0	0	Q9UIA9	Q9UIA9	Q9UIA9	XPO7	Exportin-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1065.45934	2128.90413	0.65774	0.0007008	1.2518	0.0013338	1.9096	0.0020346	1065.96238703518	11.89	0.11531	11.89	11.828	11.944	0	183	25	1.20177511391933	0.0159108621736821	1.20177511391933	484.46190064711	0	6.41401743164539						184	14	4	NaN	NaN	NaN	0.0028693	1	33722	34.338	34.033	1	32436			21357	3235	18012	18532	21357	21357		
VSFELFADK	9	Unmodified	_VSFELFADK_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.274032	1054.53351	-0.43892	-0.00023187	-0.79543	-0.00042021	-1.2344	-0.00065208	528.273283504986	13.15	0.17737	13.15	13.079	13.256	0	678	37	0.869855008346864	0.0244195217531761	0.869855008346864	352.96342281739	0	9.90877548425607						317	21	3	NaN	NaN	NaN	0.036727	1	5580	32.14	0	1	83199			21358	1417	18013	18533	21358	21358		
VSFELFADK	9	Unmodified	_VSFELFADK_			0	0	0	P62937	P62937	P62937	PPIA	Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.274032	1054.53351	0.94882	0.00050124	-1.924	-0.0010164	-0.97521	-0.00051518	528.272292080612	13.531	0.70049	13.531	13.451	14.152	0	693	100	0.85967808974117	0.0671864059030403	0.85967808974117	348.833912074027	0	27.2624103010551						2448	80	5	NaN	NaN	NaN	0.02675	1	5581	58.426	25.455	1	7549800			21359	1417	18013	18533	21359	21359		
VSFLIPECGILSEELK	16	Unmodified	_VSFLIPECGILSEELK_			0	0	0	O75818	O75818	O75818	RPP40	Ribonuclease P protein subunit p40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.48697	1832.95939	1.3787	0.0012649	0.80489	0.00073848	2.1836	0.0020034	917.488576498549	18.302	0.133	18.302	18.213	18.346	0	252	88	1.15595906938629	0.0579111801867771	1.15595906938629	466.479786462253	0	23.3696812307091						484	16	4	NaN	NaN	NaN	0.047365	1	28063	27.357	25.056	1	93411			21360	361	18014	18534	21360	21360		
VSFLLPTLR	9	Unmodified	_VSFLLPTLR_			0	0	0	Q9UFC0	Q9UFC0	Q9UFC0	LRWD1	Leucine-rich repeat and WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.32386	1044.63317	0.16445	8.606E-05	-7.5178	-0.0039342	-7.3533	-0.0038482	523.319539873814	15.5	0.21295	15.5	15.437	15.65	0	681	34	0.867820189810857	0.0223923326891349	0.867820189810857	352.180794642209	0	9.08730819234688						310	25	3	NaN	NaN	NaN	0.0030766	1	5354	81.642	52.541	1	132010			21361	3200	18015	18535	21361	21361		
VSFSYAGLSGDDPDLGPAHVVTVIAR	26	Unmodified	_VSFSYAGLSGDDPDLGPAHVVTVIAR_			0	0	0	Q9BTV4	Q9BTV4	Q9BTV4	TMEM43	Transmembrane protein 43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	881.785287	2642.33403	1.5448	0.0013622	-1.7301	-0.0015256	-0.18531	-0.00016341	882.118217701332	16.049	0.18621	16.049	15.952	16.138	0	459	34	1.01763759082241	0.022160929987054	1.01763759082241	614.5711963036	0	13.3834180028053						694	22	5	NaN	NaN	NaN	1.176E-06	1	37407	75.006	73.67	1	177100			21362	2738	18016	18536	21362	21362		
VSFYQLSHFLQCK	13	Unmodified	_VSFYQLSHFLQCK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.944942	1655.813	-1.8032	-0.00099708	-0.12124	-6.704E-05	-1.9245	-0.0010641	552.944816745326	15.216	0.070921	15.216	15.18	15.251	-1.7764E-15	759	19	0.814815566123307	0.0122522499294135	0.814815566123307	493.613902376583	0	7.42239244314567						97	9	3	NaN	NaN	NaN	0.0071443	1	23219	24.689	19.302	1	18319			21363	730	18017	18537	21363	21363		
VSFYQLSHFLQCK	13	Unmodified	_VSFYQLSHFLQCK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.944942	1655.813	-0.50595	-0.00027976	0.4642	0.00025668	-0.041748	-2.3084E-05	553.280509575342	15.207	0.17732	15.207	15.145	15.322	0	690	40	0.86171403876517	0.0264746954397943	0.86171403876517	522.024915851282	0	16.0383259845129						438	21	5	NaN	NaN	NaN	0.042594	1	23220	34.193	32.936	1	171730			21364	730	18017	18537	21364	21364		
VSFYQLSHFLQCK	13	Unmodified	_VSFYQLSHFLQCK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.913775	1655.813	2.2	0.0018236	0.96203	0.00079744	3.162	0.002621	829.417339853338	15.207	0.22167	15.207	15.101	15.322	0	306	106	1.12000185836644	0.0701047988265922	1.12000185836644	452.332441967608	0	28.3130555632572						552	26	5	NaN	NaN	NaN	0.0028737	1	23222	76.255	63.673	1	145560			21365	730	18017	18537	21365	21365		
VSGAQEMVSSAK	12	Unmodified	_VSGAQEMVSSAK_			0	0	0	O60664	O60664	O60664	PLIN3	Perilipin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.29517	1192.57579	2.1249	0.0012692	-0.45895	-0.00027413	1.666	0.00099507	597.294624941223	4.3169	0.19508	4.3169	4.2815	4.4765	0	594	43	0.926715457081489	0.0283750805572571	0.926715457081489	375.474237501314	0	11.496637565351						556	23	4	NaN	NaN	NaN	0.0005331	1	9227	76.85	57.594	1	205470			21366	272	18018	18538	21366	21366		
VSGGPSLEQR	10	Unmodified	_VSGGPSLEQR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.269813	1028.52507	0.77355	0.00039859	0.92221	0.00047519	1.6958	0.00087378	515.270521259056	3.5721	0.24824	3.5721	3.4923	3.7406	0	720	40	0.841341816837976	0.0265004542713385	0.841341816837976	341.50479423684	0	10.7566651294346						338	29	3	NaN	NaN	NaN	0.017881	1	4951	57.032	39.338	1	77882			21367	3329	18019	18539	21367	21367		
VSGHVITDIVEGK	13	Unmodified	_VSGHVITDIVEGK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	451.91727	1352.72998	-0.98458	-0.00044495	-2.0826	-0.00094115	-3.0671	-0.0013861	451.916304742326	8.8842	0.15978	8.8842	8.831	8.9908	0	822	40	0.771863999559055	0.0266298140737402	0.771863999559055	468.461101456272	0	16.1622151566685						433	19	4	NaN	NaN	NaN	0.0021038	1	13980	55.754	47.28	1	148190			21368	1259	18020	18540	21368	21368		
VSGHVITDIVEGK	13	Unmodified	_VSGHVITDIVEGK_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.372266	1352.72998	1.5045	0.0010191	0.089394	6.0553E-05	1.5939	0.0010797	677.372429721476	8.8753	0.15089	8.8753	8.831	8.9819	0	498	34	0.991429299781895	0.0221977126906285	0.991429299781895	401.149725217337	0	8.98158481725113						398	18	4	NaN	NaN	NaN	2.2815E-05	1	13981	95.138	79.259	1	176440			21369	1259	18020	18540	21369	21369		
VSGLLVLDYSK	11	Unmodified	_VSGLLVLDYSK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.342446	1192.67034	0.81184	0.00048495	0.056134	3.3531E-05	0.86798	0.00051848	597.342773661723	13.363	0.38134	13.363	13.309	13.691	0	558	64	0.951016745717027	0.0424890099492728	0.951016745717027	385.31995861589	0	17.2151159577535						849	44	5	NaN	NaN	NaN	5.5873E-05	1	9245	111.61	79.654	1	737170			21370	922	18021	18541	21370	21370		
VSGTLDTPEK	10	Unmodified	_VSGTLDTPEK_			0	0	0	Q9BYG3	Q9BYG3	Q9BYG3	NIFK	MKI67 FHA domain-interacting nucleolar phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.771854	1045.52915	1.1396	0.00059691	-1.8526	-0.00097036	-0.71299	-0.00037345	523.772099451373	3.5455	0.1862	3.5455	3.4657	3.6519	0	705	34	0.851531465363931	0.0224078882408908	0.851531465363931	345.566588907486	0	9.0935189349878						293	22	2	NaN	NaN	NaN	0.031247	1	5367	21.088	11.009	1	87655			21371	2801	18022	18542	21371	21371		
VSGVDGYETEGIR	13	Unmodified	_VSGVDGYETEGIR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.333338	1380.65212	1.5293	0.0010573	0.48668	0.00033646	2.016	0.0013937	691.333709846184	7.0214	0.31041	7.0214	6.8707	7.1811	8.8818E-16	495	55	0.993446994398923	0.0363260498310551	0.993446994398923	401.88388371305	0	14.6951513954613						748	36	4	NaN	NaN	NaN	3.6988E-05	1	14844	115.41	99.532	1	327030			21372	1757	18023	18543	21372	21372		
VSHLLGINVTDFTR	14	Unmodified	_VSHLLGINVTDFTR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.622857	1570.84674	-1.0087	-0.00052918	-0.40951	-0.00021484	-1.4182	-0.00074402	524.622527237627	13.451	0.19507	13.451	13.398	13.593	0	765	58	0.810730346695089	0.0388015049244176	0.810730346695089	491.35919723226	0	23.5164211982259						668	23	5	NaN	NaN	NaN	6.1743E-05	1	20691	147.19	141.69	1	472340			21373	972	18024	18544	21373	21373		
VSHLLGINVTDFTR	14	Unmodified	_VSHLLGINVTDFTR_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.430647	1570.84674	1.9039	0.0014973	1.244	0.00097832	3.1479	0.0024756	786.431949784008	13.451	0.16849	13.451	13.407	13.575	0	369	43	1.07793901817685	0.0280786163643747	1.07793901817685	435.539972099193	0	11.3451313865673						508	20	5	NaN	NaN	NaN	1.3246E-07	1	20693	130.71	119.36	1	252870			21374	972	18024	18544	21374	21374		
VSHQGYSTEAEFEEPR	16	Unmodified	_VSHQGYSTEAEFEEPR_			0	0	0	P30533	P30533	P30533	LRPAP1	Alpha-2-macroglobulin receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	622.614867	1864.82277	0.96498	0.00060081	2.0446	0.001273	3.0096	0.0018738	622.61613379489	5.7091	0.062096	5.7091	5.6825	5.7445	0	675	31	0.871889544407995	0.0203439508833163	0.871889544407995	527.698219082811	0	12.3128746285443						154	8	3	NaN	NaN	NaN	5.0433E-05	1	28792	123.92	97.342	1	34189			21375	912	18025	18545	21375	21375		
VSHVSTGGGASLELLEGK	18	Unmodified	_VSHVSTGGGASLELLEGK_			0	0	0	P00558;P07205	P00558	P00558	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.959965	1739.90538	2.36	0.0020555	-0.19747	-0.00017199	2.1625	0.0018835	870.959872345447	9.2745	0.31039	9.2745	9.2125	9.5228	0	324	61	1.1079963157843	0.0400405396622028	1.1079963157843	447.304277091663	0	16.164588629777						1076	36	5	NaN	NaN	NaN	1.449E-10	1	25597	135.5	123.48	1	415250			21376	484	18027	18546	21376	21376		
VSHVSTGGGASLELLEGK	18	Unmodified	_VSHVSTGGGASLELLEGK_			0	0	0	P00558;P07205	P00558	P00558	PGK1;PGK2	Phosphoglycerate kinase 1;Phosphoglycerate kinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	580.975736	1739.90538	0.71252	0.00041396	1.8499	0.0010747	2.5624	0.0014887	581.31093233921	9.2656	0.25719	9.2656	9.2036	9.4608	0	579	124	0.936845902828289	0.0831273913786774	0.936845902828289	567.312250957026	0	50.3382545377549						1956	30	5	NaN	NaN	NaN	3.8326E-07	1	25598	152.23	145.48	1	613950			21377	484	18027	18546	21377	21377		
VSIAELAQASNSLIAWGR	18	Unmodified	_VSIAELAQASNSLIAWGR_			0	0	0	Q96HY6	Q96HY6	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	943.510157	1885.00576	1.209	0.0011407	0.6887	0.00064979	1.8977	0.0017905	944.012027635541	19.481	0.070913	19.481	19.463	19.534	0	243	43	1.16194328902838	0.027916769999432	1.16194328902838	468.797436562818	0	11.2632951508256						136	9	2	NaN	NaN	NaN	4.7081E-14	1	29271	179.21	161.79	1	33271			21378	2553	18028	18547	21378	21378		
VSILESLDK	9	Unmodified	_VSILESLDK_			0	0	0	P10644	P10644	P10644	PRKAR1A	cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.28714	1002.55973	-0.99998	-0.00050228	-1.507	-0.00075696	-2.507	-0.0012592	502.286507609506	11.527	0.23064	11.527	11.394	11.624	0	732	28	0.833184998970724	0.0183566683857203	0.833184998970724	338.309557648269	0	7.45361038561754						268	27	3	NaN	NaN	NaN	0.0025252	1	4360	48.157	34.51	1	76370			21379	633	18029	18548	21379	21379		
VSISEGDDK	9	Unmodified	_VSISEGDDK_			0	0	0	P22087	P22087	P22087	FBL	rRNA 2-O-methyltransferase fibrillarin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.227279	948.440005	-0.6274	-0.00029816	2.3597	0.0011214	1.7323	0.00082322	475.228532967054	2.8981	0.14189	2.8981	2.8715	3.0134	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	326.955179255077	0	6.64393037304347						160	17	2	NaN	NaN	NaN	0.065008	1	3208	19.256	14.349	1	37989			21380	800	18030	18549	21380	21380		
VSITEAMHR	9	Unmodified	_VSITEAMHR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	348.514931	1042.52296	-1.8396	-0.00064111	-0.40635	-0.00014162	-2.2459	-0.00078273	348.514388555838	5.3455	0.053175	5.3455	5.3278	5.381	0	906	10	0.714399420407021	0.00616937997846145	0.714399420407021	434.884774014354	0	3.75555934271796						30	7	2	NaN	NaN	NaN	0.061846	1	5281	22.386	18.778	1	4166			21381	1816	18031	18550	21381	21381		
VSIVNHLEFLRDEELEER	18	Unmodified	_VSIVNHLEFLRDEELEER_			0	0	1	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	557.539292	2226.12806	0.9299	0.00051846	-1.4931	-0.00083248	-0.56323	-0.00031402	557.789587275028	12.928	0.10641	12.928	12.893	12.999	0	651	37	0.888155670855968	0.0243856529681402	0.888155670855968	715.863308053673	0	19.6551063914252						255	13	4	NaN	NaN	NaN	0.022361	1	34949	21.376	20.281	1	56310			21382	2149	18032	18551	21382	21382		
VSIVNHLEFLRDEELEER	18	Unmodified	_VSIVNHLEFLRDEELEER_			0	0	1	Q7Z6Z7	Q7Z6Z7	Q7Z6Z7	HUWE1	E3 ubiquitin-protein ligase HUWE1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.049963	2226.12806	1.9761	0.0014684	-1.9716	-0.001465	0.0044991	3.3431E-06	743.381802349121	12.928	0.13302	12.928	12.875	13.008	0	477	40	1.0055473068722	0.0262082910405103	1.0055473068722	607.863405703028	0	15.8431741009729						317	16	3	NaN	NaN	NaN	0.065606	1	34950	26.929	25.658	1	103040			21383	2149	18032	18551	21383	21383		
VSIYEAMR	8	Unmodified	_VSIYEAMR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.747127	967.479702	-0.017639	-8.5504E-06	-1.6437	-0.00079677	-1.6613	-0.00080532	484.746302020236	8.2366	0.21294	8.2366	8.1745	8.3874	0	717	34	0.84338031290707	0.0224203443559257	0.84338031290707	342.617342243341	0	9.10810778701943						349	25	3	NaN	NaN	NaN	0.068587	1	3576	27.736	18.973	1	73012			21384	1816	18033	18552	21384	21384		
VSLDVNHFAPDELTVK	16	Unmodified	_VSLDVNHFAPDELTVK_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.312348	1782.91521	1.1527	0.00068619	-2.3535	-0.001401	-1.2008	-0.00071486	595.311215878968	12.901	0.39904	12.901	12.768	13.167	0	717	118	0.84338031290707	0.0794462833591315	0.84338031290707	510.616373061482	0	48.0999762992149						2783	46	6	NaN	NaN	NaN	1.3547E-06	1	26766	98.865	65.765	1	7835700			21385	516	18034	18553	21385	21385		
VSLDVNHFAPDELTVK	16	Unmodified	_VSLDVNHFAPDELTVK_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.464884	1782.91521	3.7702	0.0033648	-0.44584	-0.0003979	3.3244	0.0029669	892.465212292506	12.901	0.37242	12.901	12.768	13.141	1.7764E-15	261	112	1.14997238118939	0.0738562472721522	1.14997238118939	464.161713260953	0	29.8104918253867						2703	43	4	NaN	NaN	NaN	2.2679E-12	1	26771	167.01	133.91	1	3780100			21386	516	18034	18553	21386	21386		
VSLEEIYSGCTK	12	Unmodified	_VSLEEIYSGCTK_			0	0	0	P25685;Q9UDY4	P25685;Q9UDY4	P25685	DNAJB1;DNAJB4	DnaJ homolog subfamily B member 1;DnaJ homolog subfamily B member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.334492	1384.65443	1.8386	0.0012748	0.60229	0.00041759	2.4409	0.0016924	693.335191524236	10.853	0.13295	10.853	10.773	10.906	0	483	46	1.00151498427745	0.0302528786941803	1.00151498427745	405.136055082015	0	12.2379915642275						474	16	4	NaN	NaN	NaN	0.00042472	1	14965	94.66	82.593	1	325060			21387	839;3197	18035	18554	21387	21387		
VSLEETAQLPSAPQGSR	17	Unmodified	_VSLEETAQLPSAPQGSR_			0	0	0	Q9BRP8	Q9BRP8	Q9BRP8	WIBG	Partner of Y14 and mago	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.455047	1768.89554	2.5766	0.0022815	-0.94184	-0.00083396	1.6348	0.0014475	885.45456307133	9.5583	0.1684	9.5583	9.4874	9.6558	0	294	67	1.12800004657306	0.0440021704183331	1.12800004657306	455.32089943379	0	17.7616196672883						698	20	4	NaN	NaN	NaN	9.3468E-11	1	26384	117.77	107.52	1	218820			21388	2710	18036	18555	21388	21388		
VSLLGPVTTPEHQLLK	16	Unmodified	_VSLLGPVTTPEHQLLK_			0	0	0	Q9H0H5	Q9H0H5	Q9H0H5	RACGAP1	Rac GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.004967	1730.99307	-0.53584	-0.00030972	-0.044079	-2.5478E-05	-0.57992	-0.00033519	578.339241625261	12.467	0.133	12.467	12.396	12.529	0	666	25	0.877991458330206	0.0162706422840635	0.877991458330206	531.694234952528	0	9.85317866060359						226	16	3	NaN	NaN	NaN	0.008147	1	25365	20.966	19.914	1	57252			21389	2846	18037	18556	21389	21389		
VSLLNEQFLPLIR	13	Unmodified	_VSLLNEQFLPLIR_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	771.456133	1540.89771	1.1436	0.00088222	-2.5948	-0.0020018	-1.4513	-0.0011196	771.453847693343	18.718	0.079801	18.718	18.683	18.763	0	420	88	1.04379886199097	0.0582632336836104	1.04379886199097	421.8173170478	0	23.5451884552469						539	10	4	NaN	NaN	NaN	7.0626E-05	1	19755	53.028	42.777	1	163080			21390	2900	18038	18557	21390	21390		
VSLPLFDFK	9	Unmodified	_VSLPLFDFK_			0	0	0	O00443	O00443	O00443	PIK3C2A	Phosphatidylinositol 4-phosphate 3-kinase C2 domain-containing subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.302593	1064.59063	-1.0209	-0.00054445	-0.43409	-0.0002315	-1.455	-0.00077595	533.302444318505	17.184	0.13301	17.184	17.131	17.264	0	696	61	0.857641857947968	0.0406879164685867	0.857641857947968	347.965277478672	0	16.508035391248						285	16	2	NaN	NaN	NaN	0.0075663	1	5838	48.157	34.51	1	58682			21391	80	18039	18558	21391	21391		
VSLQVHPDR	9	Unmodified	_VSLQVHPDR_			0	0	0	Q8WXX5	Q8WXX5	Q8WXX5	DNAJC9	DnaJ homolog subfamily C member 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	350.861207	1049.56179	-0.55708	-0.00019546	0.48606	0.00017054	-0.071019	-2.4918E-05	350.861174690475	4.0953	0.088694	4.0953	4.0686	4.1573	0	891	22	0.724677416575734	0.0143831732446839	0.724677416575734	441.102924313057	0	8.75487442276096						106	11	2	NaN	NaN	NaN	0.050373	1	5463	29.31	18.481	1	24754			21392	2398	18040	18559	21392	21392		
VSMPDVDLNLK	11	Unmodified	_VSMPDVDLNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.823563	1229.63257	1.6248	0.0010006	-3.6667	-0.002258	-2.0419	-0.0012575	615.822328505424	12.83	0.16849	12.83	12.751	12.919	0	570	52	0.942920803299286	0.0344196803127764	0.942920803299286	381.908408626803	0	13.9409007497774						445	20	3	NaN	NaN	NaN	0.037483	1	10296	34.953	29.087	1	136130			21393	1584	18041	18560	21393	21393		
VSMPDVELNLK	11	Unmodified	_VSMPDVELNLK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.831388	1243.64822	1.3031	0.0008116	-0.21282	-0.00013255	1.0903	0.00067905	622.831398876138	12.981	0.18622	12.981	12.884	13.07	0	546	55	0.959108205975751	0.0364015060107022	0.959108205975751	388.416125057543	0	14.7417484522005						601	22	4	NaN	NaN	NaN	0.0071088	1	10741	39.039	18.805	1	206570			21394	1584	18042	18561	21394	21394		
VSMSPVLHTQNK	12	Unmodified	_VSMSPVLHTQNK_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.853187	1339.69182	1.9636	0.0013173	-0.60838	-0.00040813	1.3552	0.00090917	670.852613980396	4.9376	0.097527	4.9376	4.9021	4.9997	0	489	28	0.997481546940468	0.0181517240953996	0.997481546940468	403.638299872889	0	7.34522966976368						181	12	4	NaN	NaN	NaN	0.00063019	1	13587	79.311	64.548	1	36690			21395	2354	18043	18562	21395	21395		
VSNLQYLHSYLTYIK	15	Unmodified	_VSNLQYLHSYLTYIK_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.664722	1840.97234	0.30773	0.00018915	-2.4957	-0.001534	-2.188	-0.0013449	614.997242591917	14.409	0.070953	14.409	14.373	14.444	0	621	79	0.908462957275599	0.0527770191441246	0.908462957275599	549.886291984697	0	31.9455615958196						410	9	3	NaN	NaN	NaN	0.0020958	1	28262	45.183	36.809	1	98339			21396	3212	18044	18563	21396	21396		
VSNLQYLHSYLTYIK	15	Unmodified	_VSNLQYLHSYLTYIK_			0	0	0	Q9UHB9	Q9UHB9	Q9UHB9	SRP68	Signal recognition particle subunit SRP68	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.493444	1840.97234	1.8298	0.0016862	4.4413	0.0040926	6.2711	0.0057788	922.001563014705	14.409	0.22167	14.409	14.311	14.533	0	171	34	1.20972836110953	0.021866930737948	1.20972836110953	488.162064080206	0	8.82396940280466						313	26	4	NaN	NaN	NaN	0.0027682	1	28265	63.766	49.403	1	87058			21397	3212	18044	18563	21397	21397		
VSPDMAIFITMNPGYAGR	18	Unmodified	_VSPDMAIFITMNPGYAGR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.473871	1938.93319	1.5051	0.0014606	2.1476	0.0020842	3.6527	0.0035448	970.475940349673	17.442	0.15076	17.442	17.388	17.539	0	228	43	1.17191150690002	0.0279129335847876	1.17191150690002	472.723113551469	0	11.2594584103541						402	18	3	NaN	NaN	NaN	6.5861E-05	1	30483	49.487	44.099	1	95527			21398	1737	18045	18564	21398	21398		
VSPEEVTIYNHPGIQAELR	19	Unmodified	_VSPEEVTIYNHPGIQAELR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.039287	2151.09603	0.70567	0.0005067	-0.2713	-0.0001948	0.43437	0.0003119	718.373261967281	11.057	0.15961	11.057	10.986	11.146	0	666	34	0.877991458330206	0.0223674774771112	0.877991458330206	530.869322571795	0	13.524286031776						455	19	5	NaN	NaN	NaN	0.00090879	1	34047	45.17	43.582	1	129570			21399	2354	18046	18565	21399	21399		
VSPETVDSVIMGNVLQSSSDAIYLAR	26	Unmodified	_VSPETVDSVIMGNVLQSSSDAIYLAR_			0	0	0	P42765	P42765	P42765	ACAA2	3-ketoacyl-CoA thiolase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	917.800497	2750.37966	1.0388	0.00095339	-0.50245	-0.00046115	0.53632	0.00049224	918.134079566942	19.907	0.035468	19.907	19.889	19.924	0	309	22	1.11800162319566	0.0140035745208897	1.11800162319566	675.044160096841	0	8.45529291253376						63	5	4	NaN	NaN	NaN	0.022664	1	37756	28.955	28.513	1	10007			21400	1056	18047	18566	21400	21400		
VSQEHPVVLTK	11	Unmodified	_VSQEHPVVLTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.85097	1235.68739	2.662	0.0016474	-2.5363	-0.0015696	0.12567	7.7773E-05	618.850231590542	3.6608	0.27485	3.6608	3.6076	3.8824	0	561	64	0.948993180460448	0.0425066621336401	0.948993180460448	384.346971962048	0	17.2154102006841						648	32	4	NaN	NaN	NaN	1.7553E-05	1	10500	97.175	76.941	1	538790			21401	922	18048	18567	21401	21401		
VSQEHPVVLTK	11	Unmodified	_VSQEHPVVLTK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	412.903072	1235.68739	-0.30224	-0.00012479	2.0662	0.00085313	1.7639	0.00072834	412.904208710005	3.6608	0.46103	3.6608	3.5987	4.0598	0	810	40	0.78005493425781	0.0266112761847965	0.78005493425781	473.884920772819	0	16.1664030988977						952	53	5	NaN	NaN	NaN	0.0016779	1	10502	96.957	90.266	1	853700			21402	922	18048	18567	21402	21402		
VSQFLVDGVCTVANCVGK	18	Unmodified	_VSQFLVDGVCTVANCVGK_			0	0	0	Q8N0X7	Q8N0X7	Q8N0X7	SPG20	Spartin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	976.98206	1951.94957	0.63139	0.00061686	0.91883	0.00089768	1.5502	0.0015145	976.983234144758	15.038	0.070931	15.038	15.012	15.083	0	87	55	1.26527909472281	0.0356524917372214	1.26527909472281	510.361345502176	0	14.3807431335928						388	9	4	NaN	NaN	NaN	1.2225E-06	1	30751	70.598	67.513	1	89685			21403	2235	18049	18568	21403	21403		
VSQGQLVVMQPEK	13	Unmodified	_VSQGQLVVMQPEK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.887226	1441.7599	2.3796	0.0017178	-0.78041	-0.00056337	1.5992	0.0011544	721.887041759702	7.8463	0.20396	7.8463	7.7576	7.9615	8.8818E-16	456	67	1.01965166402748	0.0443126963387586	1.01965166402748	412.311207852945	0	17.9184931435192						934	24	5	NaN	NaN	NaN	4.7796E-11	1	16726	156.73	136.54	1	482660			21404	680	18050	18569	21404	21404		
VSQGQLVVMQPEK	13	Oxidation (M)	_VSQGQLVVM(Oxidation (M))QPEK_	VSQGQLVVM(1)QPEK	VSQGQLVVM(77)QPEK	0	1	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.884684	1457.75481	2.1889	0.0015977	-1.4941	-0.0010905	0.69483	0.00050715	729.883775898616	5.7091	0.13296	5.7091	5.6471	5.78	0	465	37	1.01360860968299	0.024180571015918	1.01360860968299	409.824870339733	0	9.77675138773594						235	16	3	NaN	NaN	NaN	0.0062756	1	17200	77.157	62.702	1	56612			21405	680	18050	18570	21405	21405	216	
VSQGVEDGPDTK	12	Unmodified	_VSQGVEDGPDTK_			0	0	0	Q9UBE0	Q9UBE0	Q9UBE0	SAE1	SUMO-activating enzyme subunit 1;SUMO-activating enzyme subunit 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.293682	1230.57281	1.4232	0.0008771	-0.46868	-0.00028884	0.95451	0.00058826	616.293559166225	2.5611	0.1508	2.5611	2.5168	2.6676	0	630	34	0.902373728295776	0.0223302721813649	0.902373728295776	365.482634342956	0	9.04428669244834						199	18	2	NaN	NaN	NaN	0.0036553	1	10315	67.548	50.152	1	43109			21406	3172	18051	18571	21406	21406		
VSQMAQYFEPLTLAAVGAASK	21	Unmodified	_VSQMAQYFEPLTLAAVGAASK_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1091.56427	2181.11399	-0.20108	-0.00021949	0.72618	0.00079268	0.5251	0.00057318	1092.06679154039	18.639	0.08867	18.639	18.594	18.683	0	75	55	1.27319752866042	0.0356329655820204	1.27319752866042	513.174203108616	0	14.3622009195928						368	11	4	NaN	NaN	NaN	1.999E-05	1	34467	43.767	42.588	1	66818			21407	3406	18052	18572	21407	21407		
VSQPIEGHAASFAQFK	16	Unmodified	_VSQPIEGHAASFAQFK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.96165	1715.86312	-0.41708	-0.00023897	0.38025	0.00021787	-0.036827	-2.11E-05	572.961620190405	8.5293	0.16847	8.5293	8.485	8.6534	0	747	58	0.822982596624503	0.0387799269101239	0.822982596624503	498.416826995192	0	23.4859986115458						652	20	5	NaN	NaN	NaN	1.7548E-06	1	24935	102.03	54.695	1	429300			21408	1503	18053	18573	21408	21408		
VSQPIEGHAASFAQFK	16	Unmodified	_VSQPIEGHAASFAQFK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.938836	1715.86312	2.8247	0.0024263	-1.5939	-0.0013691	1.2308	0.0010572	859.437844811666	8.5293	0.13306	8.5293	8.485	8.618	0	318	76	1.11199926528787	0.0500610283962133	1.11199926528787	448.97001237106	0	20.2121541263224						604	16	4	NaN	NaN	NaN	2.5223E-09	1	24937	155.57	141.12	1	159860			21409	1503	18053	18573	21409	21409		
VSQTPESLDFLK	12	Unmodified	_VSQTPESLDFLK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.358825	1362.7031	0.94704	0.00064622	-1.6228	-0.0011074	-0.67579	-0.00046113	682.358905460964	12.316	0.1596	12.316	12.272	12.431	0	495	31	0.993446994398923	0.0201727650206149	0.993446994398923	401.936370258705	0	8.16165129713193						410	19	4	NaN	NaN	NaN	0.0063709	1	14279	55.754	41.956	1	137430			21410	1611	18054	18574	21410	21410		
VSSDNVADLHEK	12	Unmodified	_VSSDNVADLHEK_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	438.549246	1312.62591	-1.2066	-0.00052914	1.5832	0.00069433	0.37667	0.00016519	438.550172125261	3.5544	0.25714	3.5544	3.5189	3.776	4.4409E-16	828	34	0.767766820543916	0.0225360574368206	0.767766820543916	466.118169750848	0	13.6818439723783						595	30	4	NaN	NaN	NaN	0.011017	1	12725	57.888	52.392	1	245920			21411	875	18055	18575	21411	21411		
VSSDNVADLHEK	12	Unmodified	_VSSDNVADLHEK_			0	0	0	P28074	P28074	P28074	PSMB5	Proteasome subunit beta type-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	657.320231	1312.62591	2.4224	0.0015923	-0.1314	-8.6371E-05	2.291	0.0015059	657.319760690723	3.5544	0.23054	3.5544	3.5189	3.7494	4.4409E-16	528	46	0.971237000454584	0.0303157001501234	0.971237000454584	393.100982267575	0	12.2700550962999						466	27	3	NaN	NaN	NaN	4.0576E-05	1	12726	95.138	75.814	1	152460			21412	875	18055	18575	21412	21412		
VSSQSFSEIER	11	Unmodified	_VSSQSFSEIER_			0	0	0	Q8N6H7	Q8N6H7	Q8N6H7	ARFGAP2	ADP-ribosylation factor GTPase-activating protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.809499	1267.60444	1.3744	0.00087251	-0.11992	-7.6124E-05	1.2545	0.00079638	634.809470023505	6.658	0.12414	6.658	6.6225	6.7466	0	576	31	0.938871150116794	0.0202538779292779	0.938871150116794	380.141691354937	0	8.20063904570327						157	15	2	NaN	NaN	NaN	0.00057162	1	11434	70.389	53.932	1	49961			21413	2263	18056	18576	21413	21413		
VSSSCLDLPDSTEEK	15	Unmodified	_VSSSCLDLPDSTEEK_			0	0	0	Q5VT52	Q5VT52	Q5VT52	RPRD2	Regulation of nuclear pre-mRNA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	833.877449	1665.74035	2.964	0.0024716	2.793	0.002329	5.757	0.0048006	833.88058086505	8.0325	0.10657	8.0325	7.9881	8.0947	0	315	43	1.11400032671325	0.0280245115446394	1.11400032671325	449.886359814208	0	11.3176317655016						289	13	3	NaN	NaN	NaN	0.00026628	1	23491	66.953	51.805	1	66677			21414	2007	18057	18577	21414	21414		
VSSVALCK	8	Unmodified	_VSSVALCK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.236396	862.458238	-0.71736	-0.00031007	-1.6889	-0.00072999	-2.4062	-0.0010401	432.235608316198	3.7494	0.10638	3.7494	3.7051	3.8115	4.4409E-16	807	25	0.782101955086014	0.0163727478201636	0.782101955086014	318.264973745347	0	6.6626507212228						116	13	2	NaN	NaN	NaN	0.018831	1	1755	58.286	33.435	1	24845			21415	2594	18058	18578	21415	21415		
VSSYPVALIPGQFQEYYK	18	Unmodified	_VSSYPVALIPGQFQEYYK_			0	0	0	Q8WUB8	Q8WUB8	Q8WUB8	PHF10	PHD finger protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.03567	2088.05679	1.1527	0.0012047	0.084282	8.8077E-05	1.237	0.0012927	1045.53799712238	16.537	0.14185	16.537	16.484	16.626	0	153	52	1.22165005014568	0.0337619154736248	1.22165005014568	492.536365876193	0	13.6118941348346						415	17	4	NaN	NaN	NaN	0.0020379	1	33156	45.183	25.293	1	86713			21416	2365	18059	18579	21416	21416		
VSTLPAITLK	10	Unmodified	_VSTLPAITLK_			0	0	0	P07339	P07339	P07339	CTSD	Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.828975	1041.6434	0.32789	0.0001711	-1.1005	-0.00057427	-0.7726	-0.00040317	521.82830222878	11.225	0.15075	11.225	11.146	11.296	0	672	52	0.873923798053065	0.0345775238845497	0.873923798053065	354.670987136199	0	14.032853386279						419	18	3	NaN	NaN	NaN	0.056168	1	5272	19.324	14.784	1	141120			21417	557	18060	18580	21417	21417		
VSVADHSLHLSK	12	Unmodified	_VSVADHSLHLSK_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	431.570093	1291.68845	-0.65183	-0.00028131	0.067395	2.9086E-05	-0.58444	-0.00025223	431.570224518984	4.8578	0.27489	4.8578	4.7869	5.0617	0	831	85	0.76571780291124	0.0573286115468167	0.76571780291124	464.952560321324	0	34.810585070658						796	32	5	NaN	NaN	NaN	0.00063437	1	12137	92.428	81.726	1	445670			21418	1637	18061	18581	21418	21418		
VSVADHSLHLSK	12	Unmodified	_VSVADHSLHLSK_			0	0	0	Q13162	Q13162	Q13162	PRDX4	Peroxiredoxin-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.851501	1291.68845	2.6032	0.0016839	-1.2589	-0.00081434	1.3442	0.00086951	646.85076210931	4.8578	0.133	4.8578	4.8223	4.9553	0	462	34	1.01562323939346	0.022160929987054	1.01562323939346	411.135384899564	0	8.9709866085783						317	16	4	NaN	NaN	NaN	1.0136E-08	1	12139	145.75	124.47	1	121440			21419	1637	18061	18581	21419	21419		
VSVELTNSLFK	11	Unmodified	_VSVELTNSLFK_			0	0	0	P14923	P14923	P14923	JUP	Junction plakoglobin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.845353	1235.67615	0.46917	0.00029034	2.7887	0.0017258	3.2578	0.0020161	618.847728147075	13.327	0.062073	13.327	13.292	13.354	0	561	13	0.948993180460448	0.0080959424177417	0.948993180460448	384.34698791652	0	3.27889720039383						63	8	2	NaN	NaN	NaN	0.051448	1	10499	35.33	26.352	1	20188			21420	706	18062	18582	21420	21420		
VSVFFGGLSIK	11	Unmodified	_VSVFFGGLSIK_			0	0	0	O00148	O00148	O00148	DDX39A	ATP-dependent RNA helicase DDX39A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.334424	1152.6543	0.11674	6.74E-05	-1.3089	-0.00075567	-1.1921	-0.00068827	577.333858355969	15.73	0.23943	15.73	15.668	15.908	0	612	70	0.914549654013882	0.046638837805429	0.914549654013882	370.691805105251	0	18.9039872228119						947	28	4	NaN	NaN	NaN	0.00066522	1	8144	72.365	57.83	1	565250			21421	51	18063	18583	21421	21421		
VSVGAPDLSLEASEGSIK	18	Unmodified	_VSVGAPDLSLEASEGSIK_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.959631	1757.90471	2.2755	0.0020023	0.84209	0.00074101	3.1176	0.0027434	879.961449875231	12.13	0.15076	12.13	12.077	12.227	0	288	58	1.13199748998575	0.0379835677667413	1.13199748998575	456.956692113641	0	15.3329363668313						666	18	5	NaN	NaN	NaN	6.3732E-11	1	26092	101.43	86.453	1	269280			21422	1584	18064	18584	21422	21422		
VSVGEFSAEGEGNSK	15	Unmodified	_VSVGEFSAEGEGNSK_			0	0	0	Q9NUL3	Q9NUL3	Q9NUL3	STAU2	Double-stranded RNA-binding protein Staufen homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.84681	1495.67907	1.2279	0.00091948	-2.096	-0.0015696	-0.86815	-0.00065011	748.845961471789	7.0214	0.13308	7.0214	6.9771	7.1102	8.8818E-16	480	43	1.00353128488872	0.0282106679353067	1.00353128488872	405.653643378073	0	11.4034912537431						253	16	3	NaN	NaN	NaN	0.0034377	1	18405	46.768	41.617	1	55601			21423	3052	18065	18585	21423	21423		
VSVHVIEGDHR	11	Unmodified	_VSVHVIEGDHR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.328193	1246.64183	2.3576	0.0014719	-1.4809	-0.00092457	0.8767	0.00054735	624.327659360995	3.5544	0.23941	3.5544	3.5189	3.7583	4.4409E-16	555	43	0.953040030838688	0.0283240376798207	0.953040030838688	385.948487141559	0	11.4702626736963						367	28	4	NaN	NaN	NaN	2.0303E-05	1	10827	81.099	72.916	1	113750			21424	1127	18066	18586	21424	21424		
VSVHVIEGDHR	11	Unmodified	_VSVHVIEGDHR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.554554	1246.64183	-0.13757	-5.7306E-05	1.1534	0.00048047	1.0159	0.00042316	416.555199028095	3.5544	0.27485	3.5544	3.51	3.7849	0	855	34	0.749315378969369	0.0225643393094115	0.749315378969369	455.166459539123	0	13.7065523056936						610	32	5	NaN	NaN	NaN	1.5149E-05	1	10828	146.27	133.45	1	464390			21425	1127	18066	18586	21425	21425		
VSVLDYLSYAVYQQGDLDK	19	Unmodified	_VSVLDYLSYAVYQQGDLDK_			0	0	0	P13674	P13674	P13674	P4HA1	Prolyl 4-hydroxylase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.031798	2175.07357	0.026884	1.9518E-05	0.043705	3.1731E-05	0.070588	5.1249E-05	726.366491809179	19.915	0.035482	19.915	19.907	19.942	0	531	25	0.969216233931596	0.0161672517924917	0.969216233931596	585.986117622532	0	9.77468678179059						54	5	3	NaN	NaN	NaN	0.0087301	1	34382	53.051	51.427	1	11452			21426	681	18068	18587	21426	21426		
VSVLNVAVLENPSPFHSPFR	20	Unmodified	_VSVLNVAVLENPSPFHSPFR_			0	0	0	Q9NVP2	Q9NVP2	Q9NVP2	ASF1B	Histone chaperone ASF1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.063656	2208.16914	-0.43171	-0.0003182	-0.93401	-0.00068843	-1.3657	-0.0010066	737.396902981847	16.892	0.079853	16.892	16.856	16.936	0	537	49	0.965173861991602	0.0323479365760566	0.965173861991602	583.486655936414	0	19.5556366396614						320	10	3	NaN	NaN	NaN	8.0953E-06	1	34768	56.473	47.317	1	70857			21427	3073	18069	18588	21427	21427		
VSVPLIAQGNSYPSETTVK	19	Unmodified	_VSVPLIAQGNSYPSETTVK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.528212	1989.04187	0.86788	0.000864	-0.0024986	-2.4875E-06	0.86538	0.00086151	996.029889311248	11.953	0.14188	11.953	11.864	12.006	0	180	46	1.203763835057	0.0298308249325894	1.203763835057	485.48470366743	0	12.0309389439892						374	17	3	NaN	NaN	NaN	1.765E-05	1	31443	52.201	51.582	1	73724			21428	639	18070	18589	21428	21428		
VSVPLIAQGNSYPSETTVK	19	Unmodified	_VSVPLIAQGNSYPSETTVK_			0	0	0	P11047	P11047	P11047	LAMC1	Laminin subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.528212	1989.04187	0.54983	0.00054737	1.0933	0.0010884	1.6431	0.0016358	996.030789756244	11.944	0.18623	11.944	11.837	12.024	0	126	40	1.23951419873743	0.0257931613515507	1.23951419873743	499.903021976666	0	10.4025265052276						590	22	4	NaN	NaN	NaN	0.00013165	1	31444	49.967	48.343	1	136750			21429	639	18070	18589	21429	21429		
VSVPSNLSYGEWLHGFEK	18	Unmodified	_VSVPSNLSYGEWLHGFEK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.00745	2048.00034	0.60033	0.00061534	0.85837	0.00087984	1.4587	0.0014952	1025.51058484878	15.127	0.053217	15.127	15.109	15.163	0	90	34	1.26329880838669	0.0217891209230916	1.26329880838669	509.393827546495	0	8.7859211393237						160	7	3	NaN	NaN	NaN	0.00011231	1	32504	40.83	37.19	1	31833			21430	2167	18071	18590	21430	21430		
VSVTTNTTDSVSDEEK	16	Unmodified	_VSVTTNTTDSVSDEEK_			0	0	0	Q9NR09	Q9NR09	Q9NR09	BIRC6	Baculoviral IAP repeat-containing protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.397061	1710.77957	3.5853	0.0030704	-3.3911	-0.0029041	0.19423	0.00016634	856.394514088528	5.0085	0.062069	5.0085	4.9819	5.044	0	339	28	1.09798411722691	0.0180294071906015	1.09798411722691	443.321954509993	0	7.27955159732255						104	8	3	NaN	NaN	NaN	5.246E-09	1	24773	115.35	87.758	1	19052			21431	3008	18072	18591	21431	21431		
VSVYLQNWSHVLSYVSK	17	Unmodified	_VSVYLQNWSHVLSYVSK_			0	0	0	Q13098	Q13098	Q13098	GPS1	COP9 signalosome complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.354547	2008.04181	-1.3693	-0.00091795	-0.6337	-0.0004248	-2.003	-0.0013427	670.688818650889	16.688	0.079827	16.688	16.652	16.732	0	672	22	0.873923798053065	0.0142397763386857	0.873923798053065	528.651064712645	0	8.61387793705444						139	10	4	NaN	NaN	NaN	0.065549	1	31782	7.6476	4.5628	1	24190			21432	1626	18073	18592	21432	21432		
VSWAAAPHSIESFCLGHTEFVSR	23	Unmodified	_VSWAAAPHSIESFCLGHTEFVSR_			0	0	0	P57081	P57081	P57081	WDR4	tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.41654	2587.22779	2.0555	0.0017747	2.0228	0.0017465	4.0782	0.0035212	863.419103754033	13.637	0.062075	13.637	13.602	13.664	0	300	61	1.12400150285141	0.0400184925300473	1.12400150285141	678.882083062065	0	24.1706416769744						292	8	4	NaN	NaN	NaN	0.00060827	1	37189	45.826	43.64	1	51198			21433	1292	18074	18593	21433	21433		
VSYDMDGFCER	11	Unmodified	_VSYDMDGFCER_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.773745	1377.53294	1.1398	0.00078622	0.27636	0.00019063	1.4162	0.00097684	689.77411409042	9.2036	0.10641	9.2036	9.1592	9.2656	0	519	25	0.97729762293174	0.0161583079199887	0.97729762293174	395.359777179427	0	6.53674466093474						212	13	4	NaN	NaN	NaN	0.041488	1	14720	21.15	19.351	1	55485			21434	1611	18075	18594	21434	21434		
VSYFPTVPGVYIVSTK	16	Unmodified	_VSYFPTVPGVYIVSTK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	878.979638	1755.94472	2.0576	0.0018086	-0.55519	-0.000488	1.5024	0.0013206	879.480890055983	16.466	0.30147	16.466	16.369	16.67	0	276	64	1.13998907770044	0.0419645157254074	1.13998907770044	460.186703780347	0	16.9400852562276						1402	35	6	NaN	NaN	NaN	0.057058	1	26056	28.277	0.049153	1	785590			21435	326	18076	18595	21435	21435		
VSYGIGDEEHDQEGR	15	Unmodified	_VSYGIGDEEHDQEGR_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.868805	1689.72306	3.0796	0.0026049	-1.8601	-0.0015734	1.2195	0.0010316	845.867227402138	4.645	0.11529	4.645	4.6184	4.7337	0	357	79	1.08596037261705	0.0521388447163624	1.08596037261705	438.511152335387	0	21.0536824865068						477	14	3	NaN	NaN	NaN	3.0163E-06	1	24193	93.772	80.597	1	147490			21436	866	18077	18596	21436	21436		
VSYGIGDEEHDQEGR	15	Unmodified	_VSYGIGDEEHDQEGR_			0	0	0	P27695	P27695	P27695	APEX1	DNA-(apurinic or apyrimidinic site) lyase;DNA-(apurinic or apyrimidinic site) lyase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.248295	1689.72306	1.151	0.00064948	0.79955	0.00045114	1.9506	0.0011006	564.24871117311	4.6539	0.15073	4.6539	4.6095	4.7603	0	684	58	0.86578508874114	0.0386723063597282	0.86578508874114	524.403898544688	0	23.4237208338194						543	18	4	NaN	NaN	NaN	1.4364E-08	1	24194	128.97	126.3	1	224630			21437	866	18077	18596	21437	21437		
VSYLRPLDFEEAR	13	Unmodified	_VSYLRPLDFEEAR_			0	0	1	Q96EK5	Q96EK5	Q96EK5	KIAA1279	KIF1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.278979	1593.81511	-2.1684	-0.0011542	-0.69873	-0.00037192	-2.8672	-0.0015261	532.278969757815	11.758	0.070915	11.758	11.722	11.793	0	807	34	0.782101955086014	0.0225140971696576	0.782101955086014	473.948774692493	0	13.6433986611035						186	9	3	NaN	NaN	NaN	0.031232	1	21399	44.82	38.073	1	44945			21438	2512	18078	18597	21438	21438		
VSYPLCFIFSSPVGCK	16	Unmodified	_VSYPLCFIFSSPVGCK_			0	0	0	P60983;O60234	P60983	P60983	GMFB;GMFG	Glia maturation factor beta;Glia maturation factor gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	930.954783	1859.89501	0.77626	0.00072267	3.8746	0.0036071	4.6509	0.0043298	931.460018302127	18.772	0.097544	18.772	18.718	18.816	0	255	31	1.15396378101328	0.0199515145732845	1.15396378101328	465.623937760821	0	8.05042838671062						189	12	4	NaN	NaN	NaN	0.041258	1	28696	25.705	24.231	1	36607			21439	1318	18079	18598	21439	21439		
VSYYENVIK	9	Unmodified	_VSYYENVIK_			0	0	0	P54577	P54577	P54577	YARS	Tyrosine--tRNA ligase, cytoplasmic;Tyrosine--tRNA ligase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.792589	1113.57063	0.78522	0.00043799	-0.32877	-0.00018338	0.45645	0.00025461	557.792339371739	8.068	0.11535	8.068	8.0237	8.139	0	657	37	0.884090832094921	0.0243890366748388	0.884090832094921	358.494666221725	0	9.88963944066438						307	14	3	NaN	NaN	NaN	0.0097464	1	7081	74.486	53.398	1	203000			21440	1251	18080	18599	21440	21440		
VTADVINAAEK	11	Unmodified	_VTADVINAAEK_			0	0	0	O43175	O43175	O43175	PHGDH	D-3-phosphoglycerate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.806228	1129.5979	1.7337	0.00098094	-0.18283	-0.00010345	1.5509	0.00087749	565.806646140739	6.0904	0.15075	6.0904	6.0017	6.1525	0	645	58	0.892219381832517	0.0385918846730076	0.892219381832517	361.727988908875	0	15.6461125091214						487	18	4	NaN	NaN	NaN	0.0020497	1	7521	81.099	69.739	1	424620			21441	189	18081	18600	21441	21441		
VTAEADSSSPTGILATSESK	20	Unmodified	_VTAEADSSSPTGILATSESK_			0	0	0	A0MZ66	A0MZ66	A0MZ66	KIAA1598	Shootin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	975.978749	1949.94295	2.3849	0.0023276	-0.79849	-0.00077931	1.5864	0.0015483	976.479282520003	8.5648	0.12413	8.5648	8.5205	8.6446	0	240	55	1.16393748060522	0.0359127357341398	1.16393748060522	469.487739063651	0	14.4858202303482						409	15	4	NaN	NaN	NaN	2.5664E-07	1	30719	84.58	83.309	1	92543			21442	5	18082	18601	21442	21442		
VTAIHIDPATHR	12	Unmodified	_VTAIHIDPATHR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	333.43611	1329.71533	-0.93751	-0.0003126	0.19313	6.4397E-05	-0.74437	-0.0002482	333.436095081704	4.4765	0.10641	4.4765	4.4499	4.5563	0	897	25	0.720567078607086	0.0164436473385462	0.720567078607086	583.201209807364	0	13.3088997627035						172	13	3	NaN	NaN	NaN	0.07212	1	13290	11.355	0	1	55676			21443	1127	18083	18602	21443	21443		
VTAIHIDPATHR	12	Unmodified	_VTAIHIDPATHR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.245721	1329.71533	-0.027344	-1.2148E-05	0.65375	0.00029043	0.62641	0.00027828	444.246112363314	4.4854	0.30147	4.4854	4.4322	4.7337	0	831	46	0.76571780291124	0.0307267106334287	0.76571780291124	464.812054009055	0	18.6519699922941						757	35	5	NaN	NaN	NaN	0.00019154	1	13291	116.13	81.2	1	540770			21444	1127	18083	18602	21444	21444		
VTAIHIDPATHR	12	Unmodified	_VTAIHIDPATHR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.864943	1329.71533	2.4886	0.0016571	-0.43196	-0.00028763	2.0566	0.0013694	665.864748158303	4.4854	0.13299	4.4854	4.4411	4.5741	0	501	37	0.98941132619024	0.0242173613457122	0.98941132619024	400.403294502249	0	9.80048541016009						290	16	4	NaN	NaN	NaN	3.5798E-05	1	13293	101.82	75.961	1	95323			21445	1127	18083	18602	21445	21445		
VTAMQLYECQLIDK	14	Unmodified	_VTAMQLYECQLIDK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	856.423316	1710.83208	2.4813	0.0021251	-2.0374	-0.0017449	0.44394	0.0003802	856.422320303854	13.629	0.12412	13.629	13.575	13.7	-1.7764E-15	345	34	1.09397730668811	0.0220420155259144	1.09397730668811	441.704051333446	0	8.89967963487823						339	15	5	NaN	NaN	NaN	8.8818E-08	1	24782	104.04	89.586	1	93561			21446	718	18084	18603	21446	21446		
VTAQGPGLEPSGNIANK	17	Unmodified	_VTAQGPGLEPSGNIANK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	826.933751	1651.85295	2.8622	0.0023668	-1.6274	-0.0013458	1.2348	0.0010211	826.932448225056	6.4629	0.20395	6.4629	6.4096	6.6136	0	393	82	1.0618830335572	0.0542301088337773	1.0618830335572	428.868673584572	0	21.9022190852588						878	24	5	NaN	NaN	NaN	7.9915E-19	1	23112	181.9	163.56	1	422590			21447	792	18085	18604	21447	21447		
VTASGPGLSSYGVPASLPVDFAIDAR	26	Unmodified	_VTASGPGLSSYGVPASLPVDFAIDAR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	849.774499	2546.30167	0.84906	0.00072151	-0.14177	-0.00012047	0.70728	0.00060103	850.10922342555	18.266	0.070951	18.266	18.24	18.311	0	321	34	1.10999792833052	0.0220207732442941	1.10999792833052	670.481690888705	0	13.3013989510029						93	9	2	NaN	NaN	NaN	0.059802	1	37012	14.408	11.663	1	28852			21448	326	18086	18605	21448	21448		
VTAVIPCFPYAR	12	Unmodified	_VTAVIPCFPYAR_			0	0	0	P60891;P21108;P11908	P60891;P11908	P60891	PRPS1;PRPS1L1;PRPS2	Ribose-phosphate pyrophosphokinase 1;Ribose-phosphate pyrophosphokinase 3;Ribose-phosphate pyrophosphokinase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.368472	1392.72239	1.2149	0.00084721	0.12769	8.9045E-05	1.3426	0.00093626	697.368789316358	13.691	0.23053	13.691	13.575	13.806	0	438	73	1.03173026378327	0.0483344518917967	1.03173026378327	417.334934876701	0	19.5512878129563						973	27	4	NaN	NaN	NaN	5.1915E-05	1	15244	79.059	58.876	1	261380			21449	1313;660	18087	18606	21449	21449		
VTAVPTLLK	9	Unmodified	_VTAVPTLLK_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.305136	940.595718	-0.67987	-0.00032043	-2.2848	-0.0010768	-2.9646	-0.0013973	471.304313913433	9.6824	0.13301	9.6824	9.6204	9.7534	0	747	34	0.822982596624503	0.0224546522756353	0.822982596624503	334.464782356944	0	9.12569769649446						289	16	3	NaN	NaN	NaN	0.021448	1	3081	36.211	27.448	1	90496			21450	2704	18088	18607	21450	21450		
VTAYTVDVTGR	11	Unmodified	_VTAYTVDVTGR_			0	0	0	Q09666	Q09666	Q09666	AHNAK	Neuroblast differentiation-associated protein AHNAK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.311677	1180.6088	0.70834	0.00041885	-0.85373	-0.00050482	-0.14539	-8.597E-05	591.311181769542	7.1368	0.14188	7.1368	7.0836	7.2255	0	627	37	0.90440375274676	0.0243586086467772	0.90440375274676	366.476757261832	0	9.87044102942878						277	17	3	NaN	NaN	NaN	0.0047828	1	8899	43.168	28.406	1	76944			21451	1584	18089	18608	21451	21451		
VTCLESGLR	9	Unmodified	_VTCLESGLR_			0	0	0	O75439	O75439	O75439	PMPCB	Mitochondrial-processing peptidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.768591	1033.52263	1.015	0.00052553	-5.1591	-0.0026712	-4.1441	-0.0021457	517.767083588989	5.7268	0.25708	5.7268	5.6471	5.9041	0	705	37	0.851531465363931	0.0244466676100031	0.851531465363931	345.618777909981	0	9.92239010184989						472	28	4	NaN	NaN	NaN	0.043426	1	5088	36.211	20.712	1	180280			21452	335	18090	18609	21452	21452		
VTCPNHPDAILVEDYR	16	Unmodified	_VTCPNHPDAILVEDYR_			0	0	0	Q00403	Q00403	Q00403	GTF2B	Transcription initiation factor IIB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.640359	1897.89925	0.14725	9.3305E-05	0.36741	0.0002328	0.51466	0.00032611	633.97502627443	8.8576	0.097655	8.8576	8.8133	8.9109	0	687	34	0.863749705078866	0.0223892235225879	0.863749705078866	522.704499873063	0	13.5490036235115						272	12	4	NaN	NaN	NaN	1.286E-06	1	29557	85.081	71.303	1	63021			21453	1499	18091	18610	21453	21453		
VTCTVLTPDGTEAEADVIENEDGTYDIFYTAAK	33	Unmodified	_VTCTVLTPDGTEAEADVIENEDGTYDIFYTAAK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1203.55393	3607.63997	1.0802	0.0013	0.028513	3.4317E-05	1.1087	0.0013344	1203.88750655772	17.92	0.062077	17.92	17.903	17.965	0	192	28	1.1958073123591	0.0179083224969792	1.1958073123591	721.159082815192	0	10.8000254666463						144	8	3	NaN	NaN	NaN	1.6024E-10	1	38686	79.895	79.889	1	27751			21454	326	18092	18611	21454	21454		
VTDALNATR	9	Unmodified	_VTDALNATR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.759081	959.503609	1.0841	0.00052118	-3.5659	-0.0017143	-2.4818	-0.0011931	480.757798184967	3.9622	0.30149	3.9622	3.8647	4.1662	0	732	13	0.833184998970724	0.0081568178672512	0.833184998970724	338.515000098499	0	3.31403614389006						142	35	2	NaN	NaN	NaN	0.072819	1	3430	13.274	3.1857	1	58308			21455	635	18093	18612	21455	21455		
VTDALNATR	9	Unmodified	_VTDALNATR_			0	0	0	P10809	P10809	P10809	HSPD1	60 kDa heat shock protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.759081	959.503609	1.0014	0.00048143	0.43547	0.00020936	1.4369	0.00069079	480.759431986533	3.6253	0.399	3.6253	3.4834	3.8824	0	729	58	0.835224628594324	0.0387637552095295	0.835224628594324	339.343662651658	0	15.7493376279774						870	46	4	NaN	NaN	NaN	2.9268E-05	1	3431	106.93	44.046	1	964610			21456	635	18093	18612	21456	21456		
VTDDLVCLVYK	11	Unmodified	_VTDDLVCLVYK_			0	0	0	P49458	P49458	P49458	SRP9	Signal recognition particle 9 kDa protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.844496	1323.67444	1.0192	0.00067558	0.74302	0.0004925	1.7622	0.0011681	662.84515322344	13.664	0.3192	13.664	13.567	13.886	0	513	61	0.981336640919867	0.0403846131382039	0.981336640919867	397.154199061995	0	16.3439517251671						849	37	3	NaN	NaN	NaN	2.0344E-07	1	13095	146.27	121.02	1	692370			21457	1133	18094	18613	21457	21457		
VTDDMYAEQTENPENPLR	18	Unmodified	_VTDDMYAEQTENPENPLR_			0	0	0	Q2TAL8	Q2TAL8	Q2TAL8	QRICH1	Glutamine-rich protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.47331	2120.93206	1.4169	0.001504	-2.494	-0.0026473	-1.0771	-0.0011433	1061.46939861898	9.5406	0.11525	9.5406	9.4962	9.6115	0	198	52	1.1918274123006	0.0338407763637822	1.1918274123006	480.463480752782	0	13.642291690316						325	14	3	NaN	NaN	NaN	8.8095E-05	1	33627	63.79	61.819	1	68273			21458	1925	18095	18614	21458	21458		
VTDEILHLVPNIDNFR	16	Unmodified	_VTDEILHLVPNIDNFR_			0	0	0	P51003;Q9NRJ5	P51003	P51003	PAPOLA;PAPOLB	Poly(A) polymerase alpha;Poly(A) polymerase beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	632.338897	1893.99486	-1.2896	-0.00081544	-0.93254	-0.00058968	-2.2221	-0.0014051	632.672569950681	16.714	0.13304	16.714	16.635	16.768	0	687	25	0.863749705078866	0.0162842010813452	0.863749705078866	522.712316645255	0	9.85465166806614						260	16	3	NaN	NaN	NaN	0.00011626	1	29478	54.309	51.593	1	58630			21459	1177	18096	18615	21459	21459		
VTDGALVVVDCVSGVCVQTETVLR	24	Unmodified	_VTDGALVVVDCVSGVCVQTETVLR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1288.65656	2575.29857	0.30309	0.00039058	0.54488	0.00070217	0.84797	0.0010927	1289.15915768496	17.433	0.079781	17.433	17.406	17.486	0	63	37	1.28111162701928	0.0237455493197651	1.28111162701928	515.863539269321	0	9.56158921333713						174	10	3	NaN	NaN	NaN	0.018133	1	37141	30.392	29.694	1	30040			21460	679	18097	18616	21460	21460		
VTDLLGGLFSK	11	Unmodified	_VTDLLGGLFSK_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	575.329339	1148.64412	-0.1075	-6.185E-05	-2.9025	-0.0016699	-3.01	-0.0017317	575.327595212588	16.555	0.37241	16.555	16.493	16.865	0	615	52	0.912521036363781	0.0344912931175532	0.912521036363781	369.884824264079	0	13.9808348356158						733	43	4	NaN	NaN	NaN	2.9492E-05	1	8037	126.29	92.897	1	338700			21461	211	18098	18617	21461	21461		
VTDPVGDIVSFMHSFEEK	18	Unmodified	_VTDPVGDIVSFMHSFEEK_			0	0	0	Q96CS3	Q96CS3	Q96CS3	FAF2	FAS-associated factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.659307	2035.95609	0.092352	6.2768E-05	0.02365	1.6074E-05	0.116	7.8842E-05	679.993795821918	19.951	0.062065	19.951	19.924	19.986	0	546	31	0.959108205975751	0.0202258527858471	0.959108205975751	580.125966407805	0	12.2338046121442						168	8	5	NaN	NaN	NaN	0.0085796	1	32260	45.654	44.383	1	51706			21462	2496	18099	18618	21462	21462		
VTDTDFDGVEVR	12	Unmodified	_VTDTDFDGVEVR_			0	0	0	Q6PIU2	Q6PIU2	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.820064	1351.62557	1.407	0.00095228	-0.26497	-0.00017933	1.142	0.00077294	677.320835268443	8.7334	0.20414	8.7334	8.6712	8.8753	0	522	49	0.975277694896658	0.0323032171840146	0.975277694896658	394.617764599588	0	13.0705576690971						592	24	4	NaN	NaN	NaN	2.9479E-05	1	13925	108.4	91.943	1	162830			21463	2076	18100	18619	21463	21463		
VTDTQEAECAGPPVPDPK	18	Unmodified	_VTDTQEAECAGPPVPDPK_			0	0	0	Q99614	Q99614	Q99614	TTC1	Tetratricopeptide repeat protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.943655	1909.87276	2.8098	0.002686	-2.2838	-0.0021831	0.52602	0.00050285	955.942001285062	6.658	0.23054	6.658	6.5161	6.7466	0	285	73	1.13399579921816	0.047982557146417	1.13399579921816	457.478230640681	0	19.3571928221361						1161	27	4	NaN	NaN	NaN	1.7226E-10	1	29833	106.79	96.765	1	252410			21464	2657	18101	18620	21464	21464		
VTEAFDYLSFLPLQTVQR	18	Unmodified	_VTEAFDYLSFLPLQTVQR_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1064.05968	2126.10481	0.59164	0.00062954	-1.4268	-0.0015182	-0.83514	-0.00088863	1064.5594643118	19.898	0.044342	19.898	19.88	19.924	0	147	64	1.22562176648663	0.0417059030387732	1.22562176648663	494.079234229771	0	16.8127078024467						218	6	5	NaN	NaN	NaN	0.00011231	1	33699	66.619	64.23	1	49516			21465	3067	18102	18621	21465	21465		
VTEDEEPPTEQDK	13	Unmodified	_VTEDEEPPTEQDK_			0	0	0	Q9UI26	Q9UI26	Q9UI26	IPO11	Importin-11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.836108	1515.65766	2.4443	0.0018548	-1.7583	-0.0013342	0.68607	0.00052062	758.835093184439	3.2705	0.11526	3.2705	3.2439	3.3592	0	501	37	0.98941132619024	0.0242207100839708	0.98941132619024	399.897647777774	0	9.78946241436591						272	14	3	NaN	NaN	NaN	1.3873E-05	1	18988	92.707	88.724	1	52786			21466	3233	18103	18622	21466	21466		
VTEETVYTCTGHPLK	15	Unmodified	_VTEETVYTCTGHPLK_			0	0	0	P40937	P40937	P40937	RFC5	Replication factor C subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.950422	1733.82944	0.10906	6.3139E-05	1.0003	0.00057911	1.1093	0.00064225	579.285180945183	5.7978	0.062054	5.7978	5.7711	5.8332	0	687	25	0.863749705078866	0.0162819401050979	0.863749705078866	523.062916728498	0	9.85989231752455						132	8	3	NaN	NaN	NaN	3.3552E-05	1	25437	80.623	74.595	1	32779			21467	1024	18104	18623	21467	21467		
VTEETVYTCTGHPLK	15	Unmodified	_VTEETVYTCTGHPLK_			0	0	0	P40937	P40937	P40937	RFC5	Replication factor C subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.921994	1733.82944	2.7766	0.0024099	-1.3986	-0.0012138	1.3781	0.0011961	867.92096893135	5.7978	0.12412	5.7978	5.7623	5.8864	0	231	40	1.16991841121525	0.0259138095878944	1.16991841121525	472.315658695092	0	10.4618389859269						382	15	5	NaN	NaN	NaN	4.6683E-24	1	25438	200.76	179.61	1	130220			21468	1024	18104	18623	21468	21468		
VTEGGEPYR	9	Unmodified	_VTEGGEPYR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.243264	1006.47197	0.8499	0.00042855	-0.11202	-5.6485E-05	0.73788	0.00037207	504.243269832083	2.7562	0.26598	2.7562	2.6676	2.9336	0	732	58	0.833184998970724	0.0387745352190065	0.833184998970724	338.291748342246	0	15.7433287044293						735	31	3	NaN	NaN	NaN	0.0062155	1	4419	60.589	39.931	1	249920			21469	1771	18105	18624	21469	21469		
VTEGLTDVILYHQPDDK	17	Unmodified	_VTEGLTDVILYHQPDDK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.330067	1941.96837	0.27406	0.00017768	0.045887	2.975E-05	0.31995	0.00020743	648.664519347825	11.997	0.2749	11.997	11.935	12.21	0	618	79	0.910492137470517	0.0527770191441246	0.910492137470517	550.90036863653	0	31.9331470371724						1707	32	6	NaN	NaN	NaN	6.7936E-11	1	30554	203.93	192.45	1	1271500			21470	263	18106	18625	21470	21470		
VTEGLTDVILYHQPDDK	17	Unmodified	_VTEGLTDVILYHQPDDK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.991463	1941.96837	1.601	0.0015562	0.28415	0.00027619	1.8852	0.0018324	972.493419787346	11.997	0.17734	11.997	11.935	12.112	0	156	79	1.21966378336455	0.0516606913837157	1.21966378336455	491.979865005377	0	20.8385460974602						1347	21	5	NaN	NaN	NaN	3.1931E-14	1	30555	162.52	151.31	1	681860			21471	263	18106	18625	21471	21471		
VTEGLVDVILYHQPDDK	17	Unmodified	_VTEGLVDVILYHQPDDK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.670312	1939.98911	0.82928	0.0005371	-0.97713	-0.00063286	-0.14785	-9.5755E-05	648.003892736911	14.586	0.18622	14.586	14.533	14.719	0	597	148	0.924688525662974	0.0995819280876169	0.924688525662974	559.494054109568	0	60.253258384321						1784	22	5	NaN	NaN	NaN	3.4566E-08	1	30512	144.2	122.84	1	762430			21472	196	18107	18626	21472	21472		
VTEGLVDVILYHQPDDK	17	Unmodified	_VTEGLVDVILYHQPDDK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.00183	1939.98911	1.8548	0.0018011	-0.62532	-0.00060719	1.2295	0.0011939	971.502597780917	14.586	0.17735	14.586	14.533	14.71	0	114	70	1.24744674793813	0.0456278184977881	1.24744674793813	503.190418321994	0	18.405179311238						1037	21	6	NaN	NaN	NaN	5.616E-19	1	30514	141.87	130.66	1	469100			21473	196	18107	18626	21473	21473		
VTEGLVDVILYHQPDDKK	18	Unmodified	_VTEGLVDVILYHQPDDKK_			0	0	1	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	690.368633	2068.08407	1.308	0.00090297	1.3018	0.00089875	2.6098	0.0018017	690.70371391007	12.795	0.11527	12.795	12.751	12.866	0	537	22	0.965173861991602	0.0141512395446776	0.965173861991602	583.733461981104	0	8.5586155780195						250	14	4	NaN	NaN	NaN	0.010303	1	32851	30.862	29.682	1	62164			21474	196	18108	18627	21474	21474		
VTEGSFVYK	9	Unmodified	_VTEGSFVYK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.266207	1028.51786	0.86692	0.00044669	-2.1778	-0.0011222	-1.3109	-0.00067546	515.265043192884	6.1436	0.83364	6.1436	5.5051	6.3387	0	741	103	0.827064408645228	0.069294518384737	0.827064408645228	335.709568665419	0	28.1269906365862						1554	95	4	NaN	NaN	NaN	0.0010834	1	4948	58.426	21.856	1	716960			21475	1161	18109	18628	21475	21475		
VTELALTASDR	11	Unmodified	_VTELALTASDR_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.31696	1174.61937	1.7628	0.0010371	-9.6542	-0.0056797	-7.8914	-0.0046427	588.312205683547	7.3585	0.19508	7.3585	7.2875	7.4826	0	600	103	0.922661313351899	0.0688918964977451	0.922661313351899	373.897026658046	0	27.9175845877442						770	23	4	NaN	NaN	NaN	0.00086684	1	8729	95.311	39.297	1	312560			21476	1465	18110	18629	21476	21476		
VTELQQQPLCTSVNTIYDNAVQGLR	25	Unmodified	_VTELQQQPLCTSVNTIYDNAVQGLR_			0	0	0	Q96AG4	Q96AG4	Q96AG4	LRRC59	Leucine-rich repeat-containing protein 59	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	949.815029	2846.42326	1.4588	0.0013856	0.76946	0.00073084	2.2283	0.0021164	950.150431782925	17.38	0.15074	17.38	17.309	17.459	0	291	79	1.12999890578964	0.0520025768629264	1.12999890578964	682.172239230631	0	31.3935828809994						833	18	5	NaN	NaN	NaN	4.9662E-10	1	37997	109.42	105.37	1	176340			21477	2474	18111	18630	21477	21477		
VTEPSAPCQALVSIGDLQATFHGIR	25	Unmodified	_VTEPSAPCQALVSIGDLQATFHGIR_			0	0	0	Q9UPN7	Q9UPN7	Q9UPN7	PPP6R1	Serine/threonine-protein phosphatase 6 regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	889.790155	2666.34863	1.361	0.001211	1.3286	0.0011821	2.6895	0.0023931	890.459586527007	17.424	0.11524	17.424	17.371	17.486	0	267	37	1.14597988355104	0.0239648752236348	1.14597988355104	692.046977994004	0	14.4721733030152						268	14	4	NaN	NaN	NaN	1.7867E-06	1	37497	60.14	58.889	1	52175			21478	3312	18112	18631	21478	21478		
VTEYLYANK	9	Unmodified	_VTEYLYANK_			0	0	0	P23368	P23368	P23368	ME2	NAD-dependent malic enzyme, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.784764	1099.55498	0.34597	0.00019055	-2.1414	-0.0011794	-1.7954	-0.00098887	550.783924732357	5.8864	0.18624	5.8864	5.7978	5.984	0	651	43	0.888155670855968	0.0284499302427105	0.888155670855968	360.19906561281	0	11.538110520983						279	22	3	NaN	NaN	NaN	0.068436	1	6697	20.234	10.84	1	67588			21479	817	18113	18632	21479	21479		
VTFDPTSSYTLEDLKPDTLYR	21	Unmodified	_VTFDPTSSYTLEDLKPDTLYR_			0	0	1	P10586	P10586	P10586	PTPRF	Receptor-type tyrosine-protein phosphatase F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	821.075955	2460.20604	1.055	0.00086626	1.0038	0.00082416	2.0588	0.0016904	821.410770212705	15.216	0.079807	15.216	15.163	15.242	0	438	64	1.03173026378327	0.0422663641098704	1.03173026378327	623.323356641319	0	25.5353679879287						326	10	3	NaN	NaN	NaN	0.0069068	1	36628	38.668	34.071	1	62402			21480	627	18114	18633	21480	21480		
VTFEDATDFFGR	12	Unmodified	_VTFEDATDFFGR_			0	0	0	Q86WQ0	Q86WQ0	Q86WQ0	NR2C2AP	Nuclear receptor 2C2-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.825149	1403.63574	1.1778	0.00082777	-1.3607	-0.00095631	-0.1829	-0.00012854	702.824330716038	15.526	0.10642	15.526	15.482	15.588	0	501	31	0.98941132619024	0.0201811333938051	0.98941132619024	400.186337220294	0	8.16264544385064						276	13	4	NaN	NaN	NaN	0.0076537	1	15567	35.33	30.501	1	65418			21481	2180	18115	18634	21481	21481		
VTFSEDDEIINPEDVDPSVGR	21	Unmodified	_VTFSEDDEIINPEDVDPSVGR_			0	0	0	Q12972	Q12972	Q12972	PPP1R8	Nuclear inhibitor of protein phosphatase 1;Activator of RNA decay	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1167.04261	2332.07066	1.0021	0.0011695	0.21336	0.000249	1.2154	0.0014185	1167.54451802557	14.4	0.13297	14.4	14.347	14.48	0	75	43	1.27319752866042	0.0277145246283468	1.27319752866042	512.963919660591	0	11.1660216618897						310	16	3	NaN	NaN	NaN	1.4956E-05	1	35912	61.23	57.59	1	55939			21482	1612	18116	18635	21482	21482		
VTGAALIPPPGGTSLTSLGQAAQ	23	Unmodified	_VTGAALIPPPGGTSLTSLGQAAQ_			0	0	0	Q9BU61	Q9BU61	Q9BU61	NDUFAF3	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.07332	2106.13208	1.4368	0.0015145	0.18547	0.0001955	1.6223	0.00171	1054.073460282	16.049	0.24827	16.049	15.934	16.182	0	114	49	1.24744674793813	0.0317171628708794	1.24744674793813	502.908381714196	0	12.7867799393636						528	29	4	NaN	NaN	NaN	0.0071065	1	33409	50.519	44.684	1	106640			21483	2741	18117	18636	21483	21483		
VTGADVPMPYAK	12	Unmodified	_VTGADVPMPYAK_			0	0	0	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.818281	1247.62201	1.6457	0.0010283	2.4991	0.0015615	4.1448	0.0025897	624.820143680015	8.3785	0.24824	8.3785	8.2544	8.5027	0	540	61	0.963152256458504	0.0404237385553284	0.963152256458504	390.040217717295	0	16.3700844610404						661	29	3	NaN	NaN	NaN	0.0062629	1	10852	57.888	45.292	1	166300			21484	644	18118	18637	21484	21484		
VTGEADVEFATHEEAVAAMSK	21	Unmodified	_VTGEADVEFATHEEAVAAMSK_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.344048	2191.01031	0.96203	0.00070358	-0.3329	-0.00024346	0.62913	0.00046011	731.678266827983	10.871	0.15963	10.871	10.835	10.995	0	609	43	0.916577990479294	0.0283829455526903	0.916577990479294	554.135589406097	0	17.159478436414						320	19	4	NaN	NaN	NaN	6.2902E-08	1	34571	117.8	109.43	1	63680			21485	1217	18119	18638	21485	21485		
VTGEADVEFATHEEAVAAMSK	21	Unmodified	_VTGEADVEFATHEEAVAAMSK_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.344048	2191.01031	1.6083	0.0011762	2.1693	0.0015865	3.7776	0.0027627	731.34649842604	10.862	0.22171	10.862	10.826	11.048	0	441	28	1.02971785871157	0.0181166496995924	1.02971785871157	622.536553884524	0	10.9527834022703						252	26	4	NaN	NaN	NaN	0.00068321	1	34572	42.977	37.895	1	46633			21486	1217	18119	18638	21486	21486		
VTGGIFSVTK	10	Unmodified	_VTGGIFSVTK_			0	0	0	Q8WUH6	Q8WUH6	Q8WUH6	TMEM263	Transmembrane protein 263	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.78985	1007.56515	-0.64597	-0.00032608	-0.95945	-0.00048432	-1.6054	-0.0008104	504.789436504938	8.7955	0.11537	8.7955	8.7599	8.8753	0	732	34	0.833184998970724	0.0224359291106897	0.833184998970724	338.28680216756	0	9.10935593162304						265	14	3	NaN	NaN	NaN	0.0080273	1	4461	47.561	31.979	1	86762			21487	2366	18120	18639	21487	21487		
VTGQNQEQFLLLAK	14	Unmodified	_VTGQNQEQFLLLAK_			0	0	0	Q9UBW8	Q9UBW8	Q9UBW8	COPS7A	COP9 signalosome complex subunit 7a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.938305	1587.86206	1.7475	0.0013891	0.576	0.00045789	2.3235	0.001847	794.938522517764	12.361	0.15962	12.361	12.29	12.449	0	261	43	1.14997238118939	0.0279474898102239	1.14997238118939	464.601458322537	0	11.2910924946344						476	19	4	NaN	NaN	NaN	1.2947E-07	1	21212	115.05	105.31	1	134070			21488	3193	18121	18640	21488	21488		
VTGTLDANR	9	Unmodified	_VTGTLDANR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.751256	945.487959	0.65776	0.00031161	-1.1064	-0.00052416	-0.44864	-0.00021255	473.75093002864	2.7119	0.24831	2.7119	2.6853	2.9336	0	744	37	0.82502364452135	0.0244942818992349	0.82502364452135	335.269286457776	0	9.95387280011414						306	29	3	NaN	NaN	NaN	0.053135	1	3168	43.734	10.339	1	73933			21489	1898	18122	18641	21489	21489		
VTHAVVTVPAYFNDAQR	17	Unmodified	_VTHAVVTVPAYFNDAQR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	944.489224	1886.9639	2.4046	0.0022711	-1.7187	-0.0016233	0.68585	0.00064777	944.989227884889	10.241	0.29262	10.241	10.073	10.365	0	243	70	1.16194328902838	0.0458853526664655	1.16194328902838	468.79389044703	0	18.5127563403148						1341	34	5	NaN	NaN	NaN	1.4424E-05	1	29310	91.939	86.845	1	510760			21490	638	18123	18642	21490	21490		
VTHAVVTVPAYFNDAQR	17	Unmodified	_VTHAVVTVPAYFNDAQR_			0	0	0	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	629.995242	1886.9639	1.1251	0.00070878	0.1206	7.5976E-05	1.2457	0.00078476	629.995304269346	10.241	0.33693	10.241	10.064	10.401	0	648	217	0.890187667287968	0.146193078778376	0.890187667287968	538.726261056274	0	88.4735361056199						4575	39	5	NaN	NaN	NaN	8.2164E-07	1	29311	119.43	107.41	1	1901900			21491	638	18123	18642	21491	21491		
VTHETSAHEGQTEAPSIDEK	20	Unmodified	_VTHETSAHEGQTEAPSIDEK_			0	0	0	P15374	P15374	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.6697	2164.98727	2.2473	0.0016241	-0.30809	-0.00022264	1.9392	0.0014014	723.003644766447	3.1198	0.11527	3.1198	3.0666	3.1818	0	600	37	0.922661313351899	0.0243349817538098	0.922661313351899	557.855587942726	0	14.713313929387						289	14	4	NaN	NaN	NaN	1.5034E-07	1	34245	95.263	88.582	1	72574			21492	712	18124	18643	21492	21492		
VTHIVHQELESLAK	14	Unmodified	_VTHIVHQELESLAK_			0	0	0	Q15058	Q15058	Q15058	KIF14	Kinesin-like protein KIF14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	802.443754	1602.87296	2.2492	0.0018049	0.20465	0.00016422	2.4538	0.0019691	802.444158789791	7.3053	0.053219	7.3053	7.2875	7.3408	0	291	25	1.12999890578964	0.0159897747860325	1.12999890578964	456.494987607199	0	6.45952133705049						54	7	2	NaN	NaN	NaN	0.00028311	1	21690	65.173	52.591	1	9493.9			21493	1805	18125	18644	21493	21493		
VTIAQGGVLPNIQAVLLPK	19	Unmodified	_VTIAQGGVLPNIQAVLLPK_			0	0	0	Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q93077;Q7L7L0;P04908;Q96KK5;P20671	Q6FI13	Q6FI13	HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AH;HIST1H2AD	Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-H;Histone H2A type 1-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.394454	1930.16153	-0.50151	-0.00032317	-0.1799	-0.00011593	-0.68141	-0.0004391	644.394200883791	18.71	0.15959	18.71	18.63	18.789	0	678	58	0.869855008346864	0.0386401075458892	0.869855008346864	526.335376910591	0	23.3805121242935						699	19	4	NaN	NaN	NaN	3.7167E-07	1	30306	121.86	121.77	1	213360			21494	521	18126	18645	21494	21494		
VTIAQGGVLPNIQAVLLPK	19	Unmodified	_VTIAQGGVLPNIQAVLLPK_			0	0	0	Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q93077;Q7L7L0;P04908;Q96KK5;P20671	Q6FI13	Q6FI13	HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AH;HIST1H2AD	Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-H;Histone H2A type 1-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.088043	1930.16153	1.545	0.0014926	-0.34431	-0.00033264	1.2007	0.00116	966.588917145815	18.435	0.097518	18.435	18.381	18.479	0	192	136	1.1958073123591	0.0893822178924299	1.1958073123591	482.377737689212	0	36.0559695621321						831	12	3	NaN	NaN	NaN	2.2631E-10	1	30308	106.47	102.96	1	178870			21495	521	18126	18645	21495	21495		
VTIAQGGVLPNIQAVLLPK	19	Unmodified	_VTIAQGGVLPNIQAVLLPK_			0	0	0	Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q93077;Q7L7L0;P04908;Q96KK5;P20671	Q6FI13	Q6FI13	HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AH;HIST1H2AD	Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-H;Histone H2A type 1-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.394454	1930.16153	0.82169	0.00052949	1.0787	0.00069508	1.9004	0.0012246	644.72979154802	18.71	0.43451	18.71	18.55	18.984	0	594	67	0.926715457081489	0.0446079685713815	0.926715457081489	560.740721530773	0	26.9915693016642						2175	50	6	NaN	NaN	NaN	2.6615E-11	1	30309	187.47	185.37	1	4065600			21496	521	18126	18645	21496	21496		
VTIAQGGVLPNIQAVLLPK	19	Unmodified	_VTIAQGGVLPNIQAVLLPK_			0	0	0	Q6FI13;P0C0S8;Q99878;Q9BTM1;Q16777;Q93077;Q7L7L0;P04908;Q96KK5;P20671	Q6FI13	Q6FI13	HIST2H2AA3;HIST1H2AG;HIST1H2AJ;H2AFJ;HIST2H2AC;HIST1H2AC;HIST3H2A;HIST1H2AB;HIST1H2AH;HIST1H2AD	Histone H2A type 2-A;Histone H2A type 1;Histone H2A type 1-J;Histone H2A.J;Histone H2A type 2-C;Histone H2A type 1-C;Histone H2A type 3;Histone H2A type 1-B/E;Histone H2A type 1-H;Histone H2A type 1-D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.088043	1930.16153	1.97	0.0019032	2.0844	0.0020137	4.0544	0.0039169	966.591493070828	18.71	0.4788	18.71	18.55	19.029	0	159	415	1.21767724410157	0.275374919089547	1.21767724410157	491.19985969374	0	111.083722944795						10108	55	7	NaN	NaN	NaN	8.5709E-36	1	30310	221.62	209.45	1	23373000			21497	521	18126	18645	21497	21497		
VTILELFR	8	Unmodified	_VTILELFR_			0	0	0	P11166	P11166	P11166	SLC2A1	Solute carrier family 2, facilitated glucose transporter member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	495.80276	989.590967	-0.60142	-0.00029819	-1.016	-0.00050374	-1.6174	-0.00080193	495.802324672784	17.459	0.25713	17.459	17.406	17.663	0	687	55	0.863749705078866	0.0366496414922302	0.863749705078866	350.782377476145	0	14.8839974134857						650	30	4	NaN	NaN	NaN	0.00030777	1	4051	117.18	40.105	1	395140			21498	641	18127	18646	21498	21498		
VTIMGIYSIK	10	Unmodified	_VTIMGIYSIK_			0	0	0	P33992	P33992	P33992	MCM5	DNA replication licensing factor MCM5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.822835	1123.63112	0.41985	0.0002363	-0.017083	-9.6148E-06	0.40277	0.00022669	562.822997131394	14.01	0.133	14.01	13.948	14.081	0	603	43	0.920633820089869	0.0283868792767229	0.920633820089869	373.271806895677	0	11.5094856266713						286	16	3	NaN	NaN	NaN	0.062689	1	7370	41.796	34.645	1	68969			21499	951	18128	18647	21499	21499		
VTINDLNENSVTLIQENCHLNK	22	Unmodified	_VTINDLNENSVTLIQENCHLNK_			0	0	0	Q7Z2T5	Q7Z2T5	Q7Z2T5	TRMT1L	TRMT1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.762265	2567.26496	1.5426	0.0013217	0.5487	0.00047011	2.0913	0.0017918	857.096243223946	12.653	0.04435	12.653	12.626	12.671	0	372	25	1.07593298845566	0.0160515578478193	1.07593298845566	649.876339641535	0	9.69533211790269						56	6	2	NaN	NaN	NaN	0.02596	1	37103	23.53	22.008	1	15555			21500	2128	18129	18648	21500	21500		
VTLATLK	7	Unmodified	_VTLATLK_			0	0	0	P06748	P06748	P06748	NPM1	Nucleophosmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	373.244547	744.47454	-0.98804	-0.00036878	-0.45269	-0.00016896	-1.4407	-0.00053775	373.244323417174	6.4185	0.21279	6.4185	6.3742	6.587	0	855	34	0.749315378969369	0.0225643393094115	0.749315378969369	305.67836416571	0	9.20497633195237						287	25	3	NaN	NaN	NaN	0.04646	1	581	40.203	12.498	1	94075			21501	547	18130	18649	21501	21501		
VTLEGPSATAPASSPGLAK	19	Unmodified	_VTLEGPSATAPASSPGLAK_			0	0	0	Q6P1N0	Q6P1N0	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	877.470166	1752.92578	2.3095	0.0020266	-0.19019	-0.00016689	2.1194	0.0018597	877.971442714679	8.3697	0.070992	8.3697	8.3342	8.4051	0	183	28	1.20177511391933	0.0179009488089314	1.20177511391933	485.134812944304	0	7.22628830582488						146	9	3	NaN	NaN	NaN	1.2665E-19	1	25985	170.22	157.64	1	29880			21502	2060	18131	18650	21502	21502		
VTLEYRPVIDK	11	Unmodified	_VTLEYRPVIDK_			0	0	1	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	444.922244	1331.7449	-0.69113	-0.0003075	-0.23671	-0.00010532	-0.92784	-0.00041282	444.921829985558	8.0325	0.15975	8.0325	7.9704	8.1302	0	756	46	0.816857749704129	0.0306285018586598	0.816857749704129	495.847671061702	0	18.5920636980262						371	19	5	NaN	NaN	NaN	0.06736	1	13358	49.16	29.836	1	134690			21503	919	18132	18651	21503	21503		
VTLEYRPVIDK	11	Unmodified	_VTLEYRPVIDK_			0	0	1	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.879727	1331.7449	1.947	0.0012984	0.45839	0.00030569	2.4054	0.0016041	666.879793267035	8.0325	0.1509	8.0325	7.9881	8.139	0	459	46	1.01763759082241	0.0302236288211217	1.01763759082241	411.819677437439	0	12.2309603972515						476	18	4	NaN	NaN	NaN	0.00010572	1	13360	119.94	76.663	1	184830			21504	919	18132	18651	21504	21504		
VTLLDLMIAK	10	Unmodified	_VTLLDLMIAK_			0	0	0	Q9UBB4	Q9UBB4	Q9UBB4	ATXN10	Ataxin-10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.838485	1115.66242	-0.076409	-4.27E-05	-1.1051	-0.00061759	-1.1815	-0.00066029	558.837885430499	18.435	0.088723	18.435	18.399	18.488	0	618	70	0.910492137470517	0.0466905920016633	0.910492137470517	369.191811502196	0	18.9323812164849						344	11	3	NaN	NaN	NaN	0.0056335	1	7160	60.892	34.435	1	82586			21505	3166	18133	18652	21505	21505		
VTLLEGDHVR	10	Unmodified	_VTLLEGDHVR_			0	0	0	O75534	O75534	O75534	CSDE1	Cold shock domain-containing protein E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.814387	1137.61422	1.8772	0.0010697	1.1623	0.00066231	3.0396	0.001732	569.815303148127	5.7978	0.1862	5.7978	5.7534	5.9396	0	579	40	0.936845902828289	0.0263282200540531	0.936845902828289	379.788415297966	0	10.6732099075825						430	22	4	NaN	NaN	NaN	2.7767E-07	1	7742	123.5	74.178	1	181620			21506	344	18134	18653	21506	21506		
VTLLHHVLEEAEK	13	Unmodified	_VTLLHHVLEEAEK_			0	0	0	Q27J81	Q27J81	Q27J81	INF2	Inverted formin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	506.615591	1516.82494	-0.5323	-0.00026967	1.3167	0.00066706	0.7844	0.00039739	506.616038636271	9.31	0.1419	9.31	9.2568	9.3987	0	684	28	0.86578508874114	0.018315911392907	0.86578508874114	524.889263977144	0	11.1041705096493						221	17	4	NaN	NaN	NaN	0.0038686	1	19047	44.82	38.792	1	67342			21507	1920	18135	18654	21507	21507		
VTLMQLPTR	9	Unmodified	_VTLMQLPTR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.804977	1057.5954	0.24114	0.00012776	-3.4987	-0.0018536	-3.2576	-0.0017259	529.804096619672	10.702	0.18621	10.702	10.649	10.835	0	684	49	0.86578508874114	0.0325774564338044	0.86578508874114	351.298862029255	0	13.2185498708962						468	22	3	NaN	NaN	NaN	0.0039815	1	5663	79.059	61.663	1	182750			21508	1280	18136	18655	21508	21508		
VTLSEGPHHVALFK	14	Unmodified	_VTLSEGPHHVALFK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.922458	1533.83036	3.1256	0.0024002	-0.8173	-0.00062762	2.3083	0.0017726	767.921834218804	7.6511	0.079943	7.6511	7.6156	7.6956	0	345	25	1.09397730668811	0.0160294514259214	1.09397730668811	442.113432632624	0	6.47804643643525						140	10	3	NaN	NaN	NaN	0.057123	1	19551	24.689	17.549	1	29013			21509	255	18137	18656	21509	21509		
VTLTLPVLNAAR	12	Unmodified	_VTLTLPVLNAAR_			0	0	0	O95336	O95336	O95336	PGLS	6-phosphogluconolactonase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.390262	1266.76597	0.83957	0.00053262	-0.22212	-0.00014091	0.61746	0.00039171	634.390247098906	15.083	0.23057	15.083	14.959	15.189	0	513	37	0.981336640919867	0.0242307604673273	0.981336640919867	397.338475954585	0	9.81091812314651						420	27	2	NaN	NaN	NaN	0.0013197	1	11425	88.181	66.137	1	136480			21510	421	18138	18657	21510	21510		
VTLTSEEEAR	10	Unmodified	_VTLTSEEEAR_			0	0	0	P00338	P00338	P00338	LDHA	L-lactate dehydrogenase A chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.785492	1133.55643	3.0836	0.0017508	-0.60919	-0.00034589	2.4744	0.0014049	567.784732863855	4.2815	0.66503	4.2815	4.113	4.778	0	588	124	0.93076847747433	0.0831734914756022	0.93076847747433	377.340866530967	0	33.7191880745395						1678	76	4	NaN	NaN	NaN	1.4347E-05	1	7629	100.84	88.009	1	4476800			21511	471	18139	18658	21511	21511		
VTLVFEHVDQDLR	13	Unmodified	_VTLVFEHVDQDLR_			0	0	0	P11802	P11802	P11802	CDK4	Cyclin-dependent kinase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	524.278979	1569.81511	-1.1289	-0.00059188	0.59934	0.00031422	-0.5296	-0.00027766	524.279067856411	11.74	0.14186	11.74	11.687	11.828	0	732	46	0.833184998970724	0.0305987056772422	0.833184998970724	504.971175971142	0	18.5450583101231						360	17	4	NaN	NaN	NaN	3.5708E-05	1	20664	75.474	67.473	1	90767			21512	659	18140	18659	21512	21512		
VTLVFEHVDQDLR	13	Unmodified	_VTLVFEHVDQDLR_			0	0	0	P11802	P11802	P11802	CDK4	Cyclin-dependent kinase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	785.91483	1569.81511	1.5729	0.0012362	1.0296	0.00080916	2.6025	0.0020453	785.916227527676	11.74	0.14186	11.74	11.678	11.82	0	360	37	1.08395544855938	0.0240574350512286	1.08395544855938	437.973419452663	0	9.7204337195318						365	17	4	NaN	NaN	NaN	0.00016729	1	20665	101.64	73.316	1	90346			21513	659	18140	18659	21513	21513		
VTLVQTLEIQR	11	Unmodified	_VTLVQTLEIQR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.385177	1298.7558	0.7908	0.00051432	-1.5908	-0.0010346	-0.8	-0.00052031	650.384118065897	12.573	0.13301	12.573	12.52	12.653	0	525	31	0.973257487423603	0.0202034745303079	0.973257487423603	393.962581545824	0	8.17811636181244						215	16	3	NaN	NaN	NaN	0.00088533	1	12332	61.48	50.12	1	63235			21514	1816	18141	18660	21514	21514		
VTLVVGASQDIIPQLK	16	Unmodified	_VTLVVGASQDIIPQLK_			0	0	0	P21964	P21964	P21964	COMT	Catechol O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.998362	1679.98217	1.6318	0.0013724	0.87506	0.00073592	2.5069	0.0021083	840.999116391436	15.792	0.23943	15.792	15.659	15.899	-1.7764E-15	228	37	1.17191150690002	0.0239155091765686	1.17191150690002	473.240557834731	0	9.65754567387012						559	28	4	NaN	NaN	NaN	1.6135E-08	1	23925	119.43	110.17	1	137780			21515	797	18142	18661	21515	21515		
VTMLFLGLHNVR	12	Unmodified	_VTMLFLGLHNVR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.267468	1398.78058	-1.5425	-0.00072074	-0.46241	-0.00021607	-2.0049	-0.00093681	467.267217387148	13.407	0.097563	13.407	13.371	13.469	0	741	25	0.827064408645228	0.016324979319214	0.827064408645228	501.796483541672	0	9.904690772138						155	12	3	NaN	NaN	NaN	0.068764	1	15424	18.336	17.08	1	35203			21516	705	18143	18662	21516	21516		
VTMLFLGLHNVR	12	Unmodified	_VTMLFLGLHNVR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	467.267468	1398.78058	-2.3959	-0.0011195	0.62997	0.00029437	-1.7659	-0.00082516	467.268002995243	13.416	0.0621	13.416	13.38	13.442	0	774	19	0.804600385996946	0.0122624806871617	0.804600385996946	488.167107432818	0	7.43989169180594						68	8	2	NaN	NaN	NaN	0.045503	1	15425	23.053	21.254	1	14945			21517	705	18143	18662	21517	21517		
VTMLFLGLHNVR	12	Unmodified	_VTMLFLGLHNVR_			0	0	0	P14868	P14868	P14868	DARS	Aspartate--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.397564	1398.78058	1.2169	0.00085235	1.5745	0.0011028	2.7914	0.0019551	700.398911518515	13.416	0.13303	13.416	13.371	13.504	0	399	34	1.0578662689527	0.0220937320698047	1.0578662689527	427.888724618077	0	8.93653490507967						296	16	4	NaN	NaN	NaN	1.0883E-05	1	15426	126.82	119.27	1	71785			21518	705	18143	18662	21518	21518		
VTMNDEDMDTYVFAVGTR	18	Unmodified	_VTMNDEDMDTYVFAVGTR_			0	0	0	Q96A33	Q96A33	Q96A33	CCDC47	Coiled-coil domain-containing protein 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1032.45607	2062.89759	1.7379	0.0017943	1.4887	0.001537	3.2265	0.0033313	1033.46119319785	14.648	0.15962	14.648	14.586	14.746	0	186	70	1.1997861197946	0.0457908805043117	1.1997861197946	483.760387193614	0	18.4631358183195						413	19	3	NaN	NaN	NaN	4.7911E-05	1	32745	82.822	79.927	1	113520			21519	2468	18144	18663	21519	21519		
VTNEFVHINNLK	12	Unmodified	_VTNEFVHINNLK_			0	0	0	O00743	O00743	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.592898	1426.75686	0.061319	2.9224E-05	0.13236	6.3083E-05	0.19368	9.2307E-05	476.593087460006	8.2277	0.11532	8.2277	8.1922	8.3076	0	708	28	0.849494101904619	0.0183388204791043	0.849494101904619	515.306220761143	0	11.1243953938192						220	14	4	NaN	NaN	NaN	0.053792	1	16292	22.898	21.099	1	76251			21520	97	18145	18664	21520	21520		
VTNEFVHINNLK	12	Unmodified	_VTNEFVHINNLK_			0	0	0	O00743	O00743	O00743	PPP6C	Serine/threonine-protein phosphatase 6 catalytic subunit;Serine/threonine-protein phosphatase 6 catalytic subunit, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.385708	1426.75686	2.1905	0.0015648	0.2563	0.0001831	2.4468	0.0017479	714.386066118461	8.2277	0.097594	8.2277	8.1922	8.2898	0	426	28	1.03977710643793	0.0181016489291916	1.03977710643793	420.491238000451	0	7.32040042135679						224	12	4	NaN	NaN	NaN	3.7221E-07	1	16294	125.17	113.82	1	60137			21521	97	18145	18664	21521	21521		
VTNGAFTGEISPGMIK	16	Unmodified	_VTNGAFTGEISPGMIK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.416348	1620.81814	2.1926	0.0017791	-0.049076	-3.9821E-05	2.1435	0.0017393	811.416148074456	11.669	0.17735	11.669	11.598	11.775	0	321	109	1.10999792833052	0.0720829742894535	1.10999792833052	448.372493135589	0	29.1171920864765						1138	21	5	NaN	NaN	NaN	3.2291E-12	1	22220	174.72	162.76	1	352780			21522	1303	18146	18665	21522	21522		
VTNLSEDTR	9	Unmodified	_VTNLSEDTR_			0	0	0	O75821	O75821	O75821	EIF3G	Eukaryotic translation initiation factor 3 subunit G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.759278	1033.504	1.6844	0.00087213	-1.612	-0.00083464	0.072425	3.7499E-05	517.75855714517	3.0134	0.45221	3.0134	2.8183	3.2705	0	705	76	0.851531465363931	0.0509553590717544	0.851531465363931	345.618843641009	0	20.6817164086419						822	52	3	NaN	NaN	NaN	0.0010336	1	5086	106.93	77.616	1	238960			21523	362	18147	18666	21523	21523		
VTNSTELQHQLDK	13	Unmodified	_VTNSTELQHQLDK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	504.926605	1511.75799	-0.69944	-0.00035317	1.0912	0.00055098	0.39177	0.00019782	504.927028515161	4.4943	0.053187	4.4943	4.4765	4.5297	0	786	25	0.796423123669906	0.0163568017170922	0.796423123669906	482.852623429424	0	9.9167444857946						98	7	3	NaN	NaN	NaN	0.00059474	1	18854	68.548	59.034	1	23067			21524	1810	18148	18667	21524	21524		
VTNSTELQHQLDK	13	Unmodified	_VTNSTELQHQLDK_			0	0	0	Q15075	Q15075	Q15075	EEA1	Early endosome antigen 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.886269	1511.75799	2.9107	0.0022031	-1.2571	-0.00095151	1.6536	0.0012516	756.885991474058	4.4943	0.053187	4.4943	4.4765	4.5297	0	411	25	1.04982941439551	0.0160781459716195	1.04982941439551	424.327173954918	0	6.4985741007269						103	7	3	NaN	NaN	NaN	0.00027428	1	18856	90.156	82.599	1	21816			21525	1810	18148	18667	21525	21525		
VTNTTPWEHPYPDLPSR	17	Unmodified	_VTNTTPWEHPYPDLPSR_			0	0	0	O95361;Q309B1	O95361	O95361	TRIM16;TRIM16L	Tripartite motif-containing protein 16;Tripartite motif-containing protein 16-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	670.66204	2008.96429	1.0058	0.00067455	2.3931	0.001605	3.3989	0.0022795	670.997537222449	10.268	0.1596	10.268	10.179	10.339	0	498	22	0.991429299781895	0.0141238631290448	0.991429299781895	599.730199022074	0	8.54373301979888						326	19	4	NaN	NaN	NaN	0.0023729	1	31794	23.779	21.232	1	94159			21526	425	18149	18668	21526	21526		
VTNYIFDSLR	10	Unmodified	_VTNYIFDSLR_			0	0	0	Q8TC07	Q8TC07	Q8TC07	TBC1D15	TBC1 domain family member 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.322045	1226.62954	0.71416	0.00043873	8.4864	0.0052134	9.2006	0.0056521	614.327497254197	13.15	0.14188	13.15	13.096	13.238	0	531	31	0.969216233931596	0.0202118620218336	0.969216233931596	392.56938435286	0	8.18657173987884						184	17	3	NaN	NaN	NaN	0.0024953	1	10200	51.872	26.619	1	65805			21527	2339	18150	18669	21527	21527		
VTPAVVAYSENEEIVGLAAK	20	Unmodified	_VTPAVVAYSENEEIVGLAAK_			0	0	0	Q0VDF9	Q0VDF9	Q0VDF9	HSPA14	Heat shock 70 kDa protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1030.54914	2059.08374	1.6514	0.0017018	-2.468	-0.0025434	-0.81659	-0.00084153	1031.04905558591	14.382	0.11526	14.382	14.311	14.427	-1.7764E-15	147	40	1.22562176648663	0.0258143909113426	1.22562176648663	494.183595339523	0	10.4086340997653						312	14	3	NaN	NaN	NaN	2.62E-05	1	32694	53.363	44.951	1	82900			21528	1585	18151	18670	21528	21528		
VTQAIQSFCLEK	12	Unmodified	_VTQAIQSFCLEK_			0	0	0	P49959	P49959	P49959	MRE11A	Double-strand break repair protein MRE11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.366127	1422.7177	1.9417	0.0013832	-0.82897	-0.00059053	1.1127	0.00079268	712.365772052051	9.8952	0.16846	9.8952	9.8154	9.9839	0	471	40	1.00957851518677	0.0261938098951453	1.00957851518677	408.289904653424	0	10.5932010078685						326	18	3	NaN	NaN	NaN	0.00027969	1	16172	92.445	61.526	1	87061			21529	1157	18152	18671	21529	21529		
VTQEIVTER	9	Unmodified	_VTQEIVTER_			0	0	0	Q14126	Q14126	Q14126	DSG2	Desmoglein-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	537.793121	1073.57169	1.5558	0.00083669	-1.8277	-0.00098295	-0.27196	-0.00014626	537.79199484978	4.3435	0.13301	4.3435	4.2549	4.3879	0	663	28	0.880024865079826	0.018298122879973	0.880024865079826	357.008440339339	0	7.42318151422245						162	16	3	NaN	NaN	NaN	0.019985	1	6044	57.032	7.8725	1	68159			21530	1722	18153	18672	21530	21530		
VTQLDLDGPK	10	Unmodified	_VTQLDLDGPK_			0	0	0	Q13442	Q13442	Q13442	PDAP1	28 kDa heat- and acid-stable phosphoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.295496	1084.57644	0.9154	0.00049733	1.3016	0.00070714	2.217	0.0012045	543.296374338222	7.0303	0.30155	7.0303	6.9505	7.2521	0	624	52	0.906433495720521	0.0345056424959307	0.906433495720521	367.674607645254	0	13.9964472033923						809	35	4	NaN	NaN	NaN	0.0010282	1	6326	76.605	55.33	1	479310			21531	1669	18154	18673	21531	21531		
VTQSAYAQIVQFGMNEK	17	Unmodified	_VTQSAYAQIVQFGMNEK_			0	0	0	Q9Y4W6	Q9Y4W6	Q9Y4W6	AFG3L2	AFG3-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.474925	1912.9353	0.46403	0.0004443	0.077461	7.4167E-05	0.54149	0.00051846	957.474909951362	14.01	0.088662	14.01	13.966	14.054	0	69	58	1.27715511956461	0.0376100012347553	1.27715511956461	515.225813007118	0	15.1725058033525						303	11	3	NaN	NaN	NaN	5.4605E-10	1	29906	132.93	122.91	1	67247			21532	3416	18155	18674	21532	21532		
VTQSNFAVGYK	11	Unmodified	_VTQSNFAVGYK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.31422	1212.61389	1.5873	0.00096398	1.2463	0.00075688	2.8335	0.0017209	607.314579398525	6.4451	0.34582	6.4451	6.3033	6.6491	0	603	100	0.920633820089869	0.0668332477078247	0.920633820089869	372.9396477402	0	27.0734871059338						1406	40	5	NaN	NaN	NaN	0.0074457	1	9803	59.645	31.909	1	979370			21533	794	18156	18675	21533	21533		
VTRVEFEELCADLFER	16	Unmodified	_VTRVEFEELCADLFER_			0	0	1	Q9Y4L1	Q9Y4L1	Q9Y4L1	HYOU1	Hypoxia up-regulated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	671.663052	2011.96733	-0.37572	-0.00025236	-1.4984	-0.0010064	-1.8741	-0.0012588	671.662288284256	15.775	0.07983	15.775	15.73	15.81	0	654	22	0.886123392477847	0.0142279235023115	0.886123392477847	536.023632499202	0	8.60659283274742						148	10	4	NaN	NaN	NaN	0.0023117	1	31834	44.571	37.715	1	27999			21534	3410	18157	18676	21534	21534		
VTSEELHYFVQNHFTSAR	18	Unmodified	_VTSEELHYFVQNHFTSAR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	722.351865	2164.03377	1.4181	0.0010244	-0.032399	-2.3404E-05	1.3857	0.001001	722.686549541677	11.128	0.10641	11.128	11.075	11.181	0	522	25	0.975277694896658	0.0161605431921971	0.975277694896658	589.669936226061	0	9.77094680149639						264	13	5	NaN	NaN	NaN	6.2242E-07	1	34237	71.912	70.288	1	69617			21535	811	18158	18677	21535	21535		
VTSEELHYFVQNHFTSAR	18	Unmodified	_VTSEELHYFVQNHFTSAR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	542.015718	2164.03377	0.7663	0.00041535	0.93023	0.0005042	1.6965	0.00091955	542.267582722239	11.119	0.18622	11.119	11.057	11.243	0	651	55	0.888155670855968	0.0365937172301484	0.888155670855968	715.99045715149	0	29.5001801916493						688	22	5	NaN	NaN	NaN	0.020634	1	34238	37.886	34.992	1	300790			21536	811	18158	18677	21536	21536		
VTSQQFEAEAADEK	14	Unmodified	_VTSQQFEAEAADEK_			0	0	0	Q6PID6	Q6PID6	Q6PID6	TTC33	Tetratricopeptide repeat protein 33	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.859917	1551.70528	2.4969	0.0019397	-1.8611	-0.0014458	0.63573	0.00049388	776.858508642993	6.0727	0.11528	6.0727	6.0106	6.1259	0	432	34	1.035754240522	0.0221334029246503	1.035754240522	418.540381972726	0	8.94393916241233						246	14	3	NaN	NaN	NaN	0.00020726	1	20109	72.846	61.491	1	49099			21537	2075	18159	18678	21537	21537		
VTSVVFHPSQDLVFSASPDATIR	23	Unmodified	_VTSVVFHPSQDLVFSASPDATIR_			0	0	0	Q9UMS4	Q9UMS4	Q9UMS4	PRPF19	Pre-mRNA-processing factor 19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	825.095573	2472.26489	1.6223	0.0013385	-0.66153	-0.00054582	0.96076	0.00079272	825.42918816702	14.099	0.15076	14.099	14.054	14.205	0	540	223	0.963152256458504	0.14907327504928	0.963152256458504	581.875786587511	0	90.0606613303546						2176	18	4	NaN	NaN	NaN	1.2018E-17	1	36690	142.02	119.98	1	602690			21538	3288	18160	18679	21538	21538		
VTSYIINNLQPDTTYR	16	Unmodified	_VTSYIINNLQPDTTYR_			0	0	0	Q9Y2H6	Q9Y2H6	Q9Y2H6	FNDC3A	Fibronectin type-III domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.486347	1896.95814	1.6989	0.0016131	-5.3079	-0.0050398	-3.609	-0.0034267	949.480357020361	12.21	0.1774	12.21	12.103	12.281	0	252	31	1.15595906938629	0.0199487720168505	1.15595906938629	466.361593910773	0	8.04815789825523						220	21	3	NaN	NaN	NaN	3.0627E-06	1	29542	96.313	85.341	1	46680			21539	3342	18161	18680	21539	21539		
VTTLPGHIQAVYVQNVVK	18	Unmodified	_VTTLPGHIQAVYVQNVVK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	983.55965	1965.10475	0.65274	0.00064201	-0.34831	-0.00034259	0.30443	0.00029943	984.060976990769	11.633	0.062013	11.633	11.616	11.678	0	141	25	1.2295923935727	0.0158846877503602	1.2295923935727	495.943367682473	0	6.40692442363621						99	8	3	NaN	NaN	NaN	0.0062323	1	31024	42.941	37.325	1	15198			21540	108	18162	18681	21540	21540		
VTTLPGHIQAVYVQNVVK	18	Unmodified	_VTTLPGHIQAVYVQNVVK_			0	0	0	O14617	O14617	O14617	AP3D1	AP-3 complex subunit delta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.042192	1965.10475	0.41862	0.00027463	2.8262	0.0018541	3.2448	0.0021287	656.044361162179	11.651	0.07973	11.651	11.616	11.695	0	531	31	0.969216233931596	0.0202118620218336	0.969216233931596	586.382887276716	0	12.2283238710567						160	10	3	NaN	NaN	NaN	0.026972	1	31025	54.199	53.764	1	34462			21541	108	18162	18681	21541	21541		
VTTMDAELEFAIQPNTTGK	19	Unmodified	_VTTMDAELEFAIQPNTTGK_			0	0	0	P35241;P15311;P26038	P35241;P15311;P26038	P15311	RDX;EZR;MSN	Radixin;Ezrin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	689.341867	2065.00377	0.90081	0.00062097	-0.72096	-0.00049699	0.17985	0.00012398	689.341141933198	14.471	0.15961	14.471	14.418	14.577	0	531	40	0.969216233931596	0.0262627024268471	0.969216233931596	586.18410689617	0	15.8837401064908						218	19	4	NaN	NaN	NaN	0.0011874	1	32789	57.042	55.332	1	37587			21542	710;846;962	18163	18682	21542	21542		
VTTMDAELEFAIQPNTTGK	19	Unmodified	_VTTMDAELEFAIQPNTTGK_			0	0	0	P35241;P15311;P26038	P35241;P15311;P26038	P15311	RDX;EZR;MSN	Radixin;Ezrin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.50916	2065.00377	2.1713	0.002244	-1.2491	-0.001291	0.92214	0.00095304	1034.00932705031	14.471	0.28373	14.471	14.391	14.675	0	180	67	1.203763835057	0.0437428836446498	1.203763835057	485.360923031549	0	17.6372522279866						932	33	4	NaN	NaN	NaN	2.3288E-15	1	32790	148.69	135.47	1	235690			21543	710;846;962	18163	18682	21543	21543		
VTTMDAELEFAIQPNTTGK	19	Oxidation (M)	_VTTM(Oxidation (M))DAELEFAIQPNTTGK_	VTTM(1)DAELEFAIQPNTTGK	VTTM(76)DAELEFAIQPNTTGK	0	1	0	P35241;P15311;P26038	P35241;P15311;P26038	P15311	RDX;EZR;MSN	Radixin;Ezrin;Moesin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.50662	2080.99869	1.4025	0.0014607	-1.7205	-0.001792	-0.31809	-0.00033129	1042.00584291596	12.361	0.133	12.361	12.298	12.431	0	180	31	1.203763835057	0.0198858489699314	1.203763835057	485.336006639678	0	8.01761794683694						347	16	4	NaN	NaN	NaN	2.361E-06	1	33044	76.196	59.436	1	68273			21544	710;846;962	18163	18683	21544	21544	238	
VTTTVHNIIVGK	12	Unmodified	_VTTTVHNIIVGK_			0	0	0	P22059	P22059	P22059	OSBP	Oxysterol-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	641.379894	1280.74524	1.9233	0.0012336	-0.51093	-0.0003277	1.4124	0.00090587	641.379560930661	6.1081	0.088692	6.1081	6.0727	6.1614	0	510	25	0.983355730988811	0.0161516048852366	0.983355730988811	398.109128335949	0	6.53893717141642						175	11	3	NaN	NaN	NaN	0.0045464	1	11798	71.066	68.907	1	50492			21545	798	18164	18684	21545	21545		
VTVAGGVHISGLHTESAPR	19	Unmodified	_VTVAGGVHISGLHTESAPR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	630.006029	1886.99626	1.6771	0.0010566	0.35625	0.00022444	2.0334	0.001281	630.340645822004	7.1634	0.22169	7.1634	7.1102	7.3319	0	510	37	0.983355730988811	0.0242307604673273	0.983355730988811	595.109894863251	0	14.6640374990928						530	26	5	NaN	NaN	NaN	4.8767E-11	1	29319	150.85	124.39	1	204920			21546	1127	18165	18685	21546	21546		
VTVDTGVIPASEEK	14	Unmodified	_VTVDTGVIPASEEK_			0	0	0	O60841	O60841	O60841	EIF5B	Eukaryotic translation initiation factor 5B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.880121	1443.74569	2.2765	0.0016456	-1.8313	-0.0013238	0.44517	0.0003218	722.878595313401	8.0591	0.23071	8.0591	7.997	8.2277	0	465	79	1.01360860968299	0.0523478674550422	1.01360860968299	409.862256032325	0	21.1673567574716						736	27	5	NaN	NaN	NaN	8.5309E-06	1	16783	103.69	87.807	1	569010			21547	288	18166	18686	21547	21547		
VTVGDITCTGEGTSK	15	Unmodified	_VTVGDITCTGEGTSK_			0	0	0	O75569	O75569	O75569	PRKRA	Interferon-inducible double-stranded RNA-dependent protein kinase activator A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.864145	1523.71374	1.7818	0.0013592	-0.14205	-0.00010837	1.6397	0.0012509	762.862833609416	7.0214	0.12422	7.0214	6.9771	7.1014	0	438	40	1.03173026378327	0.0261612711685622	1.03173026378327	416.982044655181	0	10.5732871522486						286	15	3	NaN	NaN	NaN	0.0056181	1	19223	49.097	30.589	1	67591			21548	345	18167	18687	21548	21548		
VTVLFAGQHIAK	12	Unmodified	_VTVLFAGQHIAK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.377155	1282.73976	2.2657	0.0014554	-0.045093	-2.8967E-05	2.2206	0.0014264	642.37722968881	8.2188	0.15968	8.2188	8.1745	8.3342	0	432	37	1.035754240522	0.024143864458734	1.035754240522	419.315576546959	0	9.77442143078594						400	19	4	NaN	NaN	NaN	0.036291	1	11857	30.918	21.404	1	197450			21549	792	18168	18688	21549	21549		
VTVLFAGQHISK	12	Unmodified	_VTVLFAGQHISK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.374612	1298.73467	2.311	0.001503	-0.11066	-7.1972E-05	2.2003	0.001431	650.374694269933	8.0414	0.15979	8.0414	7.9881	8.1479	0	438	34	1.03173026378327	0.0221364589535984	1.03173026378327	417.631702491306	0	8.96056591964253						397	19	4	NaN	NaN	NaN	0.00056232	1	12328	83.775	60.877	1	181600			21550	326	18169	18689	21550	21550		
VTVLTLQDK	9	Unmodified	_VTVLTLQDK_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.802957	1015.59136	0.1632	8.3038E-05	-0.94311	-0.00047985	-0.7799	-0.00039682	508.80256915014	8.1922	0.070947	8.1922	8.139	8.21	0	684	34	0.86578508874114	0.0223892235225879	0.86578508874114	351.485544519098	0	9.08942475856094						154	9	3	NaN	NaN	NaN	0.031463	1	4651	49.96	28.686	1	64173			21551	3188	18170	18690	21551	21551		
VTVNPGLLVPLDVK	14	Unmodified	_VTVNPGLLVPLDVK_			0	0	0	Q6KB66;CON__Q6KB66-1	Q6KB66	Q6KB66	KRT80	Keratin, type II cytoskeletal 80	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.445234	1462.87592	0.83585	0.00061221	-0.80195	-0.00058739	0.033898	2.4829E-05	732.444836362558	16.041	0.070949	16.041	16.005	16.076	0	429	31	1.03776581230406	0.0201143318791703	1.03776581230406	419.578360759561	0	8.13241127966864						198	9	4	NaN	NaN	NaN	8.2802E-05	1	17368	97.175	92.346	1	60169		+	21552	44	18171	18691	21552	21552		
VTVNTNMVDLNDYLQHILK	19	Unmodified	_VTVNTNMVDLNDYLQHILK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.056061	2229.14635	0.1894	0.00014093	-1.5653	-0.0011646	-1.3759	-0.0010237	744.389574587662	18.718	0.11527	18.718	18.665	18.781	0	495	37	0.993446994398923	0.0242140133018964	0.993446994398923	600.543605098854	0	14.6374903988016						399	14	6	NaN	NaN	NaN	3.8863E-06	1	34981	88.796	84.241	1	136970			21553	1240	18172	18692	21553	21553		
VTVVDVNESR	10	Unmodified	_VTVVDVNESR_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.296027	1116.5775	0.56202	0.00031434	0.64974	0.0003634	1.2118	0.00067773	559.296506376666	5.4076	0.17731	5.4076	5.3455	5.5228	0	660	46	0.882057989648486	0.0304926449170472	0.882057989648486	357.658577954993	0	12.3642165788486						401	21	3	NaN	NaN	NaN	3.5153E-05	1	7182	115.86	93.933	1	158610			21554	275	18173	18693	21554	21554		
VTWAHPEFGQVLASCSFDR	19	Unmodified	_VTWAHPEFGQVLASCSFDR_			0	0	0	Q96EE3	Q96EE3	Q96EE3	SEH1L	Nucleoporin SEH1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	736.349467	2206.02657	0.41931	0.00030876	-0.68105	-0.00050149	-0.26174	-0.00019274	736.68342890889	14.223	0.079793	14.223	14.187	14.267	1.7764E-15	585	25	0.932794566565362	0.0162075912580637	0.932794566565362	563.915481932553	0	9.79820419506734						192	10	4	NaN	NaN	NaN	0.00077353	1	34743	55.782	52.708	1	42931			21555	2510	18174	18694	21555	21555		
VTWDGHSGSMAR	12	Unmodified	_VTWDGHSGSMAR_			0	0	0	Q15459	Q15459	Q15459	SF3A1	Splicing factor 3A subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	435.199783	1302.57752	-1.1785	-0.00051289	1.0821	0.00047094	-0.096388	-4.1948E-05	435.199896440118	4.4145	0.079807	4.4145	4.3879	4.4677	0	849	31	0.753417699604308	0.0205058884733159	0.753417699604308	457.443387120141	0	12.4503088845245						175	10	4	NaN	NaN	NaN	0.0033414	1	12417	48.785	42.095	1	43349			21556	1852	18175	18695	21556	21556		
VTWDSSFCAVNPR	13	Unmodified	_VTWDSSFCAVNPR_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.856457	1537.69836	2.1938	0.0016889	0.67251	0.00051773	2.8663	0.0022067	769.856495409535	11.394	0.21288	11.394	11.323	11.536	0	375	40	1.07392668217569	0.0260891796066893	1.07392668217569	434.000522219676	0	10.5432873226012						612	25	5	NaN	NaN	NaN	0.00042278	1	19651	54.584	46.582	1	246520			21557	3280	18176	18696	21557	21557		
VTWDSTFCAVNPK	13	Unmodified	_VTWDSTFCAVNPK_			0	0	0	Q9BR76	Q9BR76	Q9BR76	CORO1B	Coronin-1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.861209	1523.70786	1.3959	0.0010649	2.4535	0.0018717	3.8494	0.0029366	762.861892250469	11.695	0.15076	11.695	11.598	11.749	0	420	40	1.04379886199097	0.0261396123563653	1.04379886199097	421.85966999312	0	10.5645336893458						350	18	3	NaN	NaN	NaN	0.0037275	1	19221	81.335	72.961	1	155540			21558	2702	18177	18697	21558	21558		
VTWLAETTHALPIPVICVTYEHLITK	26	Unmodified	_VTWLAETTHALPIPVICVTYEHLITK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	752.159677	3004.6096	0.71488	0.0005377	0.82316	0.00061915	1.538	0.0011569	752.411614297003	19.41	0.11531	19.41	19.348	19.463	0	432	22	1.035754240522	0.0140810032793992	1.035754240522	833.4884555823	0	11.3312147005846						236	14	5	NaN	NaN	NaN	0.019861	1	38235	21.125	21.125	1	47461			21559	565	18178	18698	21559	21559		
VTWLAETTHALPIPVICVTYEHLITK	26	Unmodified	_VTWLAETTHALPIPVICVTYEHLITK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1002.54381	3004.6096	1.3821	0.0013856	0.94598	0.00094838	2.3281	0.002334	1002.87930433528	19.41	0.070982	19.41	19.375	19.446	0	357	22	1.08596037261705	0.0140325352916841	1.08596037261705	655.418628352114	0	8.46917186399173						181	9	5	NaN	NaN	NaN	0.0016721	1	38236	14.408	14.321	1	35280			21560	565	18178	18698	21560	21560		
VTYESLTSGIVAIHSGFK	18	Unmodified	_VTYESLTSGIVAIHSGFK_			0	0	0	Q5HYK3	Q5HYK3	Q5HYK3	COQ5	2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	955.006916	1907.99928	0.6204	0.00059248	0.22994	0.00021959	0.85033	0.00081207	955.509101002421	14.134	0.044344	14.134	14.116	14.161	0	96	28	1.2593374219024	0.0178274617371628	1.2593374219024	508.047318759096	0	7.19203128432702						90	6	2	NaN	NaN	NaN	0.0031981	1	29797	53.051	45.475	1	19151			21561	1963	18179	18699	21561	21561		
VTYHPDGPEGQAYDVDFTPPFR	22	Unmodified	_VTYHPDGPEGQAYDVDFTPPFR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.720394	2507.13935	1.6342	0.0013674	-0.42003	-0.00035145	1.2142	0.0010159	837.05427209107	13.354	0.24833	13.354	13.221	13.469	0	510	82	0.983355730988811	0.0545607436411819	0.983355730988811	594.035265549975	0	32.9595941896863						1931	29	6	NaN	NaN	NaN	1.3681E-16	1	36861	147.14	136.09	1	806360			21562	1801	18180	18700	21562	21562		
VTYLVHNFEEGGGVAMGMYNQDK	23	Unmodified	_VTYLVHNFEEGGGVAMGMYNQDK_			0	0	0	O75874	O75874	O75874	IDH1	Isocitrate dehydrogenase [NADP] cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	853.726275	2558.15699	1.7555	0.0014987	1.5435	0.0013177	3.299	0.0028164	854.06219604567	13.07	0.15073	13.07	13.034	13.185	0	300	31	1.12400150285141	0.0199954725049127	1.12400150285141	678.923305951645	0	12.077735005391						431	18	6	NaN	NaN	NaN	0.00030765	1	37055	81.373	81.04	1	135860			21563	367	18181	18701	21563	21563		
VTYTPMAPGSYLISIK	16	Unmodified	_VTYTPMAPGSYLISIK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.965674	1739.91679	2.2555	0.0019645	0.79857	0.00069553	3.0541	0.00266	871.468053410461	15.411	0.17744	15.411	15.331	15.508	0	294	67	1.12800004657306	0.0439961143381138	1.12800004657306	455.379867295451	0	17.76147507234						895	21	5	NaN	NaN	NaN	1.7083E-08	1	25600	126.17	122.19	1	469260			21564	792	18182	18702	21564	21564		
VVAEEAWENHLK	12	Unmodified	_VVAEEAWENHLK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	475.577136	1423.70958	-1.3936	-0.00066275	0.54391	0.00025867	-0.84967	-0.00040408	475.577745322398	7.3851	0.088636	7.3851	7.3496	7.4383	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	483.123084020019	0	9.9236801740542						157	11	3	NaN	NaN	NaN	0.0040058	1	16199	56.202	47.828	1	41059			21565	3409	18183	18703	21565	21565		
VVAEEAWENHLK	12	Unmodified	_VVAEEAWENHLK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.862066	1423.70958	2.3899	0.0017036	1.2326	0.00087865	3.6224	0.0025823	712.862888841191	7.3851	0.088636	7.3851	7.3496	7.4383	0	414	25	1.04781950764076	0.0160803646300043	1.04781950764076	423.752330606333	0	6.50311617532907						154	11	3	NaN	NaN	NaN	0.0025677	1	16200	57.888	56.385	1	38016			21566	3409	18183	18703	21566	21566		
VVAEVYDQER	10	Unmodified	_VVAEVYDQER_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.30131	1206.58807	2.2524	0.0013611	-0.84074	-0.00050806	1.4117	0.00085307	604.300945223556	5.044	0.2926	5.044	4.9553	5.2479	0	594	64	0.926715457081489	0.0425537884414288	0.926715457081489	375.424363937059	0	17.2390876149277						825	34	4	NaN	NaN	NaN	3.857E-05	1	9641	93.467	74.211	1	352160			21567	3225	18184	18704	21567	21567		
VVAIGECGLDFDR	13	Unmodified	_VVAIGECGLDFDR_			0	0	0	Q6P1N9	Q6P1N9	Q6P1N9	TATDN1	Putative deoxyribonuclease TATDN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.853383	1449.69221	0.90583	0.0006575	-1.6633	-0.0012073	-0.75744	-0.00054979	725.852940311924	12.343	0.14188	12.343	12.272	12.414	0	483	43	1.00151498427745	0.0282223642455827	1.00151498427745	404.956317161518	0	11.4115363882723						174	17	2	NaN	NaN	NaN	0.00030813	1	16968	90.306	84.279	1	76211			21568	2061	18185	18705	21568	21568		
VVALIGVATAADTLVTK	17	Unmodified	_VVALIGVATAADTLVTK_			0	0	0	Q9NUJ1	Q9NUJ1	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.492913	1640.97127	0.57259	0.00047038	2.166	0.0017793	2.7386	0.0022497	821.494895560789	17.14	0.11526	17.14	17.096	17.211	0	171	37	1.20972836110953	0.023856471005451	1.20972836110953	488.606730094032	0	9.63557825400204						224	14	3	NaN	NaN	NaN	0.00017268	1	22788	65.408	47.677	1	56124			21569	3050	18186	18706	21569	21569		
VVAPTISSPVCQEQLVEAGR	20	Unmodified	_VVAPTISSPVCQEQLVEAGR_			0	0	0	Q9Y490	Q9Y490	Q9Y490	TLN1	Talin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.55698	2139.0994	1.2812	0.0013716	-0.13411	-0.00014357	1.1471	0.0012281	1071.05824106049	12.041	0.11527	12.041	11.997	12.112	0	153	70	1.22165005014568	0.0456841643315047	1.22165005014568	492.458713597858	0	18.4157196210184						626	14	4	NaN	NaN	NaN	1.4094E-11	1	33870	97.949	94.697	1	143850			21570	3406	18187	18707	21570	21570		
VVAQSTNSEEIIEGEYNTVMLAIGR	25	Unmodified	_VVAQSTNSEEIIEGEYNTVMLAIGR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	908.45673	2722.34836	1.3985	0.0012705	0.12638	0.00011481	1.5249	0.0013853	908.791038971515	19.543	0.12415	19.543	19.508	19.632	0	270	40	1.14398322290989	0.0259565934896919	1.14398322290989	690.767502023046	0	15.6732816415739						544	15	7	NaN	NaN	NaN	1.7067E-18	1	37668	184.37	179.93	1	204840			21571	1914	18188	18708	21571	21571		
VVAQSTNSEEIIEGEYNTVMLAIGR	25	Oxidation (M)	_VVAQSTNSEEIIEGEYNTVM(Oxidation (M))LAIGR_	VVAQSTNSEEIIEGEYNTVM(1)LAIGR	VVAQSTNSEEIIEGEYNTVM(43)LAIGR	0	1	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	913.788368	2738.34327	1.2598	0.0011512	1.1491	0.00105	2.4089	0.0022012	914.458016045287	17.858	0.15958	17.858	17.814	17.974	0	264	34	1.14797626962532	0.0219602499318536	1.14797626962532	693.158031463246	0	13.2597894363903						263	19	4	NaN	NaN	NaN	0.002336	1	37722	42.888	42.538	1	61190			21572	1914	18188	18709	21572	21572	582	
VVASGPGLEHGK	12	Unmodified	_VVASGPGLEHGK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	384.212017	1149.61422	-0.1947	-7.4807E-05	1.5753	0.00060526	1.3806	0.00053045	384.21287034384	2.7119	0.15076	2.7119	2.6764	2.8272	0	816	22	0.775960037304758	0.0143351345420983	0.775960037304758	471.786343663833	0	8.71581059127334						169	18	3	NaN	NaN	NaN	0.064274	1	8061	30.918	28.759	1	36081			21573	326	18189	18710	21573	21573		
VVAVDCGIK	9	Unmodified	_VVAVDCGIK_			0	0	0	P31327	P31327	P31327	CPS1	Carbamoyl-phosphate synthase [ammonia], mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.762778	959.511002	0.92108	0.00044282	-1.0548	-0.0005071	-0.13371	-6.4281E-05	480.762604181258	5.1504	0.3459	5.1504	5.0795	5.4254	0	717	46	0.84338031290707	0.0305816988053002	0.84338031290707	342.657207988075	0	12.4250464088211						551	40	3	NaN	NaN	NaN	0.02502	1	3436	58.426	41.03	1	443330			21574	922	18190	18711	21574	21574		
VVAVYGTLSDLLSVASSK	18	Unmodified	_VVAVYGTLSDLLSVASSK_			0	0	0	Q7L273	Q7L273	Q7L273	KCTD9	BTB/POZ domain-containing protein KCTD9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.003842	1807.99313	0.8181	0.00074038	0.071159	6.4399E-05	0.88926	0.00080478	905.003603896935	19.543	0.053219	19.543	19.516	19.57	0	234	25	1.16792504164217	0.0159480534930851	1.16792504164217	471.357454004828	0	6.43640098705623						115	7	3	NaN	NaN	NaN	0.00050189	1	27446	63.766	55.392	1	21725			21575	2113	18191	18712	21575	21575		
VVCSSGAVGNYSGGLAVK	18	Unmodified	_VVCSSGAVGNYSGGLAVK_			0	0	0	P16455	P16455	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.935436	1723.85632	2.9441	0.0025405	-4.0643	-0.0035072	-1.1202	-0.00096668	862.931885836347	8.2366	0.071009	8.2366	8.2188	8.2898	0	342	31	1.09598084995137	0.0200340549752125	1.09598084995137	442.486139420364	0	8.08845486972746						101	9	2	NaN	NaN	NaN	1.1985E-06	1	25163	83.474	67.946	1	25870			21576	729	18192	18713	21576	21576		
VVCSSGAVGNYSGGLAVK	18	Unmodified	_VVCSSGAVGNYSGGLAVK_			0	0	0	P16455	P16455	P16455	MGMT	Methylated-DNA--protein-cysteine methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.935436	1723.85632	2.2579	0.0019484	-0.46199	-0.00039867	1.7959	0.0015498	862.934933794766	8.2454	0.044379	8.2454	8.2277	8.2721	0	192	28	1.1958073123591	0.0179083224969792	1.1958073123591	482.789590655489	0	7.2302214564873						77	6	3	NaN	NaN	NaN	2.6283E-05	1	25165	85.081	76.275	1	10612			21577	729	18192	18713	21577	21577		
VVCVGMNYVDHCK	13	Unmodified	_VVCVGMNYVDHCK_			0	0	0	Q96GK7;Q6P2I3	Q96GK7	Q96GK7	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.572123	1579.69454	-0.58429	-0.00030826	1.1109	0.0005861	0.52665	0.00027784	527.573042782165	7.0303	0.071098	7.0303	6.9949	7.066	0	726	28	0.837263974740672	0.0183515663260597	0.837263974740672	507.415617100364	0	11.1217867160474						195	9	4	NaN	NaN	NaN	0.015508	1	20949	28.328	24.983	1	47043			21578	2543	18193	18714	21578	21578		
VVCVGMNYVDHCK	13	Unmodified	_VVCVGMNYVDHCK_			0	0	0	Q96GK7;Q6P2I3	Q96GK7	Q96GK7	FAHD2A;FAHD2B	Fumarylacetoacetate hydrolase domain-containing protein 2A;Fumarylacetoacetate hydrolase domain-containing protein 2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	790.854546	1579.69454	2.3072	0.0018247	-0.43854	-0.00034682	1.8687	0.0014778	790.854330376189	7.0214	0.071098	7.0214	6.9949	7.066	8.8818E-16	327	28	1.10599442759226	0.01801947676188	1.10599442759226	446.853861517046	0	7.28039181091714						170	9	4	NaN	NaN	NaN	3.0265E-05	1	20951	90.306	80.564	1	38115			21579	2543	18193	18714	21579	21579		
VVCVYGGTGISEQIAELK	18	Unmodified	_VVCVYGGTGISEQIAELK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	961.998233	1921.98191	0.3826	0.00036806	0.62492	0.00060117	1.0075	0.00096923	961.99902340466	13.974	0.070929	13.974	13.948	14.019	0	60	64	1.28308947459206	0.0415632610089882	1.28308947459206	517.602283676997	0	16.7667487274455						252	9	3	NaN	NaN	NaN	0.00013904	1	30107	73.502	70.787	1	47352			21580	2110	18194	18715	21580	21580		
VVDALGNAIDGK	12	Unmodified	_VVDALGNAIDGK_			0	0	0	P25705	P25705	P25705	ATP5A1	ATP synthase subunit alpha, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.319502	1170.62445	1.6	0.00093811	-0.14056	-8.241E-05	1.4594	0.0008557	586.319483078473	8.4051	0.32818	8.4051	8.2898	8.618	0	585	67	0.932794566565362	0.0445462106400273	0.932794566565362	378.018332640864	0	18.0525111050075						796	38	5	NaN	NaN	NaN	0.0010055	1	8628	85.821	58.085	1	542820			21581	840	18195	18716	21581	21581		
VVDGAVGAQWLAEFR	15	Unmodified	_VVDGAVGAQWLAEFR_			0	0	0	P10515	P10515	P10515	DLAT	Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.422822	1616.83109	1.708	0.0013825	-0.054053	-4.3752E-05	1.6539	0.0013387	809.422849479501	16.51	0.21281	16.51	16.466	16.679	0	258	64	1.15196821829984	0.0419472001416383	1.15196821829984	465.335693068621	0	16.9445034508034						553	25	4	NaN	NaN	NaN	1.945E-06	1	22112	104.49	81.535	1	119590			21582	626	18196	18717	21582	21582		
VVDLLAPYAK	10	Unmodified	_VVDLLAPYAK_			0	0	0	P06576	P06576	P06576	ATP5B	ATP synthase subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.82115	1087.62775	0.69027	0.00037607	-1.1046	-0.00060179	-0.41429	-0.00022572	544.82085096603	12.245	0.25715	12.245	12.148	12.405	0	609	73	0.916577990479294	0.048690231972321	0.916577990479294	371.776424336123	0	19.7494163407743						1014	30	3	NaN	NaN	NaN	0.0052135	1	6421	49.96	27.574	1	501890			21583	541	18197	18718	21583	21583		
VVDLLAQDADIVCR	14	Unmodified	_VVDLLAQDADIVCR_			0	0	0	P30520	P30520	P30520	ADSS	Adenylosuccinate synthetase isozyme 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.913972	1585.81339	2.2441	0.0017816	-0.33885	-0.00026902	1.9053	0.0015126	793.914656693888	13.921	0.22168	13.921	13.859	14.081	0	369	91	1.07793901817685	0.0601519306615255	1.07793901817685	435.504057351189	0	24.3023115583184						610	26	4	NaN	NaN	NaN	1.3505E-05	1	21138	91.245	75.717	1	314790			21584	911	18198	18719	21584	21584		
VVDLLNQAALITNDSK	16	Unmodified	_VVDLLNQAALITNDSK_			0	0	0	Q92797	Q92797	Q92797	SYMPK	Symplekin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.472709	1712.93086	1.9138	0.0016411	-1.3174	-0.0011297	0.59639	0.00051139	857.471952409958	15.118	0.11531	15.118	15.092	15.207	0	306	43	1.12000185836644	0.0280013716258987	1.12000185836644	452.207263511025	0	11.3057166315522						258	14	3	NaN	NaN	NaN	2.3031E-06	1	24866	101.43	92.622	1	68878			21585	2433	18199	18720	21585	21585		
VVDLMAHMASK	11	Unmodified	_VVDLMAHMASK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.307026	1200.5995	2.9232	0.0017578	-0.25212	-0.0001516	2.6711	0.0016062	601.307032973237	7.7044	0.64753	7.7044	7.5979	8.2454	0	534	70	0.967195187796614	0.0465033917347906	0.967195187796614	391.845320602087	0	18.8401851801141						1996	74	6	NaN	NaN	NaN	0.00032522	1	9478	103.87	94.896	1	3382300			21586	513	18200	18721	21586	21586		
VVDLMAHMASK	11	Oxidation (M)	_VVDLM(Oxidation (M))AHMASK_	VVDLM(1)AHMASK	VVDLM(36)AHM(-36)ASK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.304484	1216.59441	2.1371	0.0013022	-0.029373	-1.7897E-05	2.1077	0.0012843	609.304534393948	4.9376	0.29259	4.9376	4.8046	5.0972	0	549	49	0.957085760909907	0.0323658503377906	0.957085760909907	387.691698711987	0	13.1106030516916						713	34	5	NaN	NaN	NaN	0.0097686	1	9918	85.622	65.389	2	390860			21587	513	18200	18722	21587	21587	95;96	
VVDLMAHMASK	11	Oxidation (M)	_VVDLMAHM(Oxidation (M))ASK_	VVDLMAHM(1)ASK	VVDLM(-41)AHM(41)ASK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	609.304484	1216.59441	2.127	0.001296	1.5176	0.00092471	3.6447	0.0022207	609.30548184385	4.7248	0.16848	4.7248	4.6716	4.8401	0	540	49	0.963152256458504	0.0323524136219553	0.963152256458504	390.149078781799	0	13.1051599436474						515	20	5	NaN	NaN	NaN	0.001841	1	9919	85.821	71.058	2	290770			21588	513	18200	18722	21588	21588	95;96	
VVDNPIYLSDMGAALTGAESHELQDVLEETNIPK	34	Unmodified	_VVDNPIYLSDMGAALTGAESHELQDVLEETNIPK_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1223.60485	3667.79272	1.3259	0.0016224	0.22605	0.00027659	1.552	0.001899	1224.27353952441	19.969	0.026603	19.969	19.96	19.986	0	177	49	1.2057522832638	0.0318086322004236	1.2057522832638	727.110755696925	0	19.1817166079338						201	4	6	NaN	NaN	NaN	0.021924	1	38708	17.872	17.023	1	47127			21589	990	18201	18723	21589	21589		
VVDNSALGNSPYHR	14	Unmodified	_VVDNSALGNSPYHR_			0	0	0	Q6P1L8	Q6P1L8	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.878778	1527.743	2.5775	0.0019714	-1.2566	-0.00096114	1.3209	0.0010103	764.877998277998	4.7691	0.070925	4.7691	4.7337	4.8046	0	408	28	1.0518390438467	0.018084171566231	1.0518390438467	425.099079274616	0	7.30868922124682						132	9	3	NaN	NaN	NaN	1.1198E-05	1	19350	91.245	81.983	1	24371			21590	2058	18202	18724	21590	21590		
VVDNSALGNSPYHR	14	Unmodified	_VVDNSALGNSPYHR_			0	0	0	Q6P1L8	Q6P1L8	Q6P1L8	MRPL14	39S ribosomal protein L14, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.254944	1527.743	-0.031106	-1.5872E-05	2.0269	0.0010342	1.9958	0.0010184	510.256244676153	4.7603	0.14186	4.7603	4.6805	4.8223	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	500.145019776165	0	11.1343511992222						255	17	4	NaN	NaN	NaN	0.0017453	1	19351	70.195	53.907	1	64209			21591	2058	18202	18724	21591	21591		
VVDRDSEEAEIIR	13	Unmodified	_VVDRDSEEAEIIR_			0	0	1	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	510.930126	1529.76855	0.21066	0.00010763	-0.16815	-8.5911E-05	0.042509	2.1719E-05	510.930238592076	5.5937	0.088772	5.5937	5.5583	5.6471	0	735	67	0.831145085810763	0.0449124468991428	0.831145085810763	503.849980800705	0	27.2264564805452						395	11	4	NaN	NaN	NaN	0.003093	1	19428	105.94	81.254	1	145900			21592	611	18203	18725	21592	21592		
VVDSMEDEVQR	11	Unmodified	_VVDSMEDEVQR_			0	0	0	Q9Y285	Q9Y285	Q9Y285	FARSA	Phenylalanine--tRNA ligase alpha subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.800817	1305.58708	1.4625	0.00095619	2.7805	0.0018179	4.243	0.0027741	653.802699882728	5.4342	0.30144	5.4342	5.2923	5.5937	0	561	58	0.948993180460448	0.0384371124263597	0.948993180460448	384.119517976247	0	15.5580096902787						755	35	5	NaN	NaN	NaN	0.00051312	1	12511	78.816	72.553	1	260030			21593	3337	18204	18726	21593	21593		
VVDYSQFQESDDADEDYGR	19	Unmodified	_VVDYSQFQESDDADEDYGR_			0	0	0	Q9H1E3	Q9H1E3	Q9H1E3	NUCKS1	Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1119.45891	2236.90327	1.7966	0.0020112	-0.38561	-0.00043168	1.411	0.0015796	1119.95979088	9.3366	0.062086	9.3366	9.31	9.3721	0	183	55	1.20177511391933	0.0357896253320413	1.20177511391933	484.310268254493	0	14.4230670485096						300	8	4	NaN	NaN	NaN	8.9135E-11	1	35058	107.46	98.302	1	54919			21594	2857	18205	18727	21594	21594		
VVDYTTAK	8	Unmodified	_VVDYTTAK_			0	0	0	P62820	P62820	P62820	RAB1A	Ras-related protein Rab-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	448.739825	895.465098	0.26264	0.00011786	-0.0036949	-1.6581E-06	0.25894	0.0001162	448.739963592509	2.969	0.097535	2.969	2.9424	3.04	0	816	28	0.775960037304758	0.0184308879834895	0.775960037304758	315.583294283905	0	7.49585038761842						105	12	2	NaN	NaN	NaN	0.071503	1	2261	26.456	18.453	1	24751			21595	1398	18206	18728	21595	21595		
VVEIVDEK	8	Unmodified	_VVEIVDEK_			0	0	0	Q6PKG0	Q6PKG0	Q6PKG0	LARP1	La-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.760758	929.506963	-0.80865	-0.00037664	-1.4933	-0.00069552	-2.3019	-0.0010722	465.760372951787	5.2657	0.15962	5.2657	5.1947	5.3544	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	335.351864225221	0	7.46568551910929						194	19	2	NaN	NaN	NaN	0.029936	1	2870	45.489	19.033	1	65416			21596	2079	18207	18729	21596	21596		
VVENLQDDFDFNYK	14	Unmodified	_VVENLQDDFDFNYK_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.404492	1744.79443	1.8691	0.0016325	0.88827	0.00077582	2.7574	0.0024083	873.405060260805	13.691	0.079798	13.691	13.655	13.735	0	348	31	1.09197348738011	0.020036815138085	1.09197348738011	440.826004070174	0	8.08879451167485						123	10	3	NaN	NaN	NaN	0.032821	1	25736	43.306	39.323	1	21182			21597	1020	18208	18730	21597	21597		
VVEQGMFVK	9	Unmodified	_VVEQGMFVK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.778428	1035.5423	0.81117	0.00042082	-4.7423	-0.0024602	-3.9311	-0.0020394	518.776302394899	10.817	0.26604	10.817	10.711	10.977	0	696	64	0.857641857947968	0.0427608903391541	0.857641857947968	348.089932358935	0	17.355304300769						903	31	4	NaN	NaN	NaN	0.059587	1	5130	21.275	0	1	337230			21598	3409	18209	18731	21598	21598		
VVETDPSPYCIVAPDTVIHCEGEPIK	26	Unmodified	_VVETDPSPYCIVAPDTVIHCEGEPIK_			0	0	0	P55072	P55072	P55072	VCP	Transitional endoplasmic reticulum ATPase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	975.805142	2924.3936	2.3778	0.0023203	0.92858	0.00090611	3.3064	0.0032264	976.140520639009	13.46	0.13303	13.46	13.371	13.504	0	312	145	1.11600111266355	0.0962034700377066	1.11600111266355	673.63451785535	0	58.0698150024156						1593	16	6	NaN	NaN	NaN	2.4497E-06	1	38109	76.23	69.926	1	393170			21599	1265	18210	18732	21599	21599		
VVETEDAYK	9	Unmodified	_VVETEDAYK_			0	0	0	Q15286	Q15286	Q15286	RAB35	Ras-related protein Rab-35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.258579	1052.50261	1.2306	0.00064883	-0.011938	-6.2944E-06	1.2186	0.00064254	527.25822503258	3.3149	0.19506	3.3149	3.2528	3.4479	0	684	34	0.86578508874114	0.0223861150035557	0.86578508874114	351.320694826996	0	9.08390035795327						258	23	2	NaN	NaN	NaN	0.048758	1	5524	23.053	12.974	1	83243			21600	1828	18211	18733	21600	21600		
VVEVLAGHGHLYSR	14	Unmodified	_VVEVLAGHGHLYSR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.917707	1535.82086	3.2212	0.0024768	-2.3611	-0.0018155	0.86004	0.0006613	768.91598437683	6.1968	0.17738	6.1968	6.1525	6.3299	0	327	49	1.10599442759226	0.0320412505786125	1.10599442759226	446.964784339067	0	12.9488090514171						600	21	5	NaN	NaN	NaN	8.9439E-12	1	19613	168.05	160.49	1	307950			21601	1127	18212	18734	21601	21601		
VVEVLAGHGHLYSR	14	Unmodified	_VVEVLAGHGHLYSR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.947563	1535.82086	1.0843	0.00055619	1.0719	0.00054983	2.1562	0.001106	512.948397264186	6.1968	0.37245	6.1968	6.0638	6.4363	0	687	100	0.863749705078866	0.0671118245634464	0.863749705078866	523.596799419056	0	40.6825453461488						1288	43	5	NaN	NaN	NaN	7.8678E-08	1	19614	127.03	117.51	1	879820			21602	1127	18212	18734	21602	21602		
VVFELFSDVCPK	12	Unmodified	_VVFELFSDVCPK_			0	0	0	Q13427	Q13427	Q13427	PPIG	Peptidyl-prolyl cis-trans isomerase G	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.365595	1438.71664	0.75792	0.00054598	1.4944	0.0010765	2.2523	0.0016225	720.366632097961	16.395	0.12412	16.395	16.315	16.44	0	399	46	1.0578662689527	0.03014029110692	1.0578662689527	427.772437382608	0	12.1879165340936						364	15	3	NaN	NaN	NaN	0.0054398	1	16636	64.064	56.418	1	78103			21603	1665	18213	18735	21603	21603		
VVFEQTK	7	Unmodified	_VVFEQTK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	425.737086	849.459619	0.28848	0.00012282	0.70755	0.00030123	0.99602	0.00042404	425.737407327443	3.7583	0.34578	3.7583	3.7051	4.0509	0	804	37	0.78414869089473	0.0245591241108515	0.78414869089473	319.174292935042	0	9.9963707957491						530	40	4	NaN	NaN	NaN	0.050781	1	1552	46.835	22.016	1	236910			21604	1303	18214	18736	21604	21604		
VVFVFGPDK	9	Unmodified	_VVFVFGPDK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.28166	1006.54877	-1.092	-0.00055069	-0.0022764	-1.1479E-06	-1.0943	-0.00055184	504.281817264623	11.953	0.3636	11.953	11.899	12.263	0	714	79	0.845418525735192	0.0529531005931746	0.845418525735192	343.25848017729	0	21.5001212736396						1152	42	4	NaN	NaN	NaN	0.0015069	1	4439	79.809	49.248	1	850050			21605	893	18215	18737	21605	21605		
VVGAMQLYSVDR	12	Unmodified	_VVGAMQLYSVDR_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.347737	1336.68092	1.226	0.00082061	-0.42543	-0.00028476	0.80055	0.00053584	669.347518829763	10.285	0.22169	10.285	10.223	10.445	0	510	40	0.983355730988811	0.0262409175570258	0.983355730988811	397.931334935344	0	10.618825949075						617	26	4	NaN	NaN	NaN	0.0032033	1	13497	70.389	52.919	1	347350			21606	1503	18216	18738	21606	21606		
VVGCSCVVVK	10	Unmodified	_VVGCSCVVVK_			0	0	0	P25398	P25398	P25398	RPS12	40S ribosomal protein S12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.788469	1105.56239	1.5447	0.00085545	0.18732	0.00010374	1.732	0.00095918	553.788967765049	4.9021	0.17731	4.9021	4.8312	5.0085	0	660	58	0.882057989648486	0.0386186640056191	0.882057989648486	357.702028915221	0	15.661072889675						773	21	4	NaN	NaN	NaN	0.00035087	1	6867	106.93	94.859	1	910060			21607	837	18217	18739	21607	21607		
VVGDVAYDEAK	11	Unmodified	_VVGDVAYDEAK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.290411	1164.56627	1.7174	0.0010017	1.5397	0.00089807	3.2571	0.0018998	583.291263963023	5.1947	0.26602	5.1947	5.1238	5.3898	0	585	49	0.932794566565362	0.0324106998985512	0.932794566565362	378.041225742314	0	13.1353474344621						621	31	4	NaN	NaN	NaN	0.0020497	1	8457	56.202	40.62	1	288000			21608	656	18218	18740	21608	21608		
VVGESLSPAFHLQLEESTGSR	21	Unmodified	_VVGESLSPAFHLQLEESTGSR_			0	0	0	O15269	O15269	O15269	SPTLC1	Serine palmitoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.381602	2242.12298	1.2738	0.00095332	-1.8578	-0.0013903	-0.58395	-0.00043701	748.71457147209	12.919	0.097609	12.919	12.893	12.99	0	597	34	0.924688525662974	0.0222993386334626	0.924688525662974	558.958750544047	0	13.4795773004561						214	12	3	NaN	NaN	NaN	0.03126	1	35120	26.55	25.456	1	44061			21609	159	18219	18741	21609	21609		
VVGFHVLGPNAGEVTQGFAAALK	23	Unmodified	_VVGFHVLGPNAGEVTQGFAAALK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.414577	2281.2219	0.18893	0.00014385	-0.53906	-0.00041045	-0.35014	-0.0002666	761.748555480794	15.89	0.15962	15.89	15.854	16.014	0	555	61	0.953040030838688	0.0404517201034513	0.953040030838688	576.035992523125	0	24.4498090164728						541	19	4	NaN	NaN	NaN	1.0815E-06	1	35474	84.266	80.626	1	127720			21610	1914	18220	18742	21610	21610		
VVGFHVLGPNAGEVTQGFAAALK	23	Unmodified	_VVGFHVLGPNAGEVTQGFAAALK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.414577	2281.2219	1.1478	0.00087392	0.73054	0.00055624	1.8783	0.0014302	761.749095982821	15.899	0.31922	15.899	15.766	16.085	0	420	151	1.04379886199097	0.100613607251689	1.04379886199097	630.892396312252	0	60.81282715672						1695	37	6	NaN	NaN	NaN	0.0062585	1	35475	59.997	59.997	1	678950			21611	1914	18220	18742	21611	21611		
VVGIHMQGLGCDEMLQGFAVAVK	23	Unmodified	_VVGIHMQGLGCDEMLQGFAVAVK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	820.412974	2458.21709	0.03105	2.5474E-05	-0.37891	-0.00031086	-0.34786	-0.00028539	820.747429388036	16.431	0.070937	16.431	16.395	16.466	0	507	43	0.985374541851584	0.0282653130088721	0.985374541851584	595.320098619106	0	17.0766629471904						345	9	5	NaN	NaN	NaN	0.00011118	1	36616	73.345	70.6	1	73877			21612	475	18221	18743	21612	21612		
VVGSEFVQK	9	Unmodified	_VVGSEFVQK_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.7742	991.533846	-0.079625	-3.9556E-05	-0.2633	-0.0001308	-0.34292	-0.00017035	496.77403580239	5.5583	0.14191	5.5583	5.5139	5.6559	0	747	76	0.822982596624503	0.0509907790120442	0.822982596624503	334.217229891564	0	20.7076030299021						357	17	3	NaN	NaN	NaN	0.0062155	1	4095	69.905	58.255	1	105860			21613	1068	18222	18744	21613	21613		
VVGSELIQK	9	Unmodified	_VVGSELIQK_			0	0	0	P62191	P62191	P62191	PSMC1	26S protease regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	486.78985	971.565146	-0.71021	-0.00034572	-0.56707	-0.00027604	-1.2773	-0.00062176	486.789635121824	6.2411	0.22172	6.2411	6.2057	6.4274	0	768	43	0.808687310729125	0.0286005208514435	0.808687310729125	328.504189962659	0	11.6180763691501						383	26	3	NaN	NaN	NaN	0.022723	1	3674	45.489	20.235	1	130090			21614	1368	18223	18745	21614	21614		
VVGSVGQHTGEPVEELALSHCGR	23	Unmodified	_VVGSVGQHTGEPVEELALSHCGR_			0	0	0	Q9H6Y2	Q9H6Y2	Q9H6Y2	WDR55	WD repeat-containing protein 55	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	605.301215	2417.17576	0.97833	0.00059218	3.4473	0.0020866	4.4256	0.0026788	605.304591144094	8.4318	0.12413	8.4318	8.3785	8.5027	0	579	25	0.936845902828289	0.016200857536437	0.936845902828289	754.738490428981	0	13.0516776812403						213	15	4	NaN	NaN	NaN	0.052554	1	36431	17.281	13.522	1	67225			21615	2911	18224	18746	21615	21615		
VVHIEQGGLVK	11	Unmodified	_VVHIEQGGLVK_			0	0	0	Q00613	Q00613	Q00613	HSF1	Heat shock factor protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	589.84823	1177.68191	1.6009	0.00094431	-0.08497	-5.012E-05	1.516	0.00089419	589.848148593081	6.9151	0.079804	6.9151	6.8796	6.9594	0	564	34	0.946969335010767	0.0222653859126632	0.946969335010767	383.735924043065	0	9.02249747852085						180	10	3	NaN	NaN	NaN	0.064408	1	8833	22.044	6.4618	1	57659			21616	1504	18225	18747	21616	21616		
VVHIMDFQR	9	Unmodified	_VVHIMDFQR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	382.202576	1143.5859	-1.3211	-0.00050492	-0.49807	-0.00019036	-1.8192	-0.00069529	382.202480770813	8.0947	0.1952	8.0947	8.0414	8.2366	0	846	31	0.755468431110051	0.0205058884733159	0.755468431110051	459.356037393163	0	12.4684279109955						419	23	4	NaN	NaN	NaN	0.00051977	1	7888	82.716	77.408	1	181910			21617	1062	18226	18748	21617	21617		
VVHIMDFQR	9	Unmodified	_VVHIMDFQR_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.800226	1143.5859	1.5392	0.00088166	2.8249	0.0016181	4.3641	0.0024997	572.80170252107	8.0947	0.23066	8.0947	8.0148	8.2454	0	573	58	0.940896116921038	0.038485045404303	0.940896116921038	381.406474389133	0	15.6004953367161						505	27	4	NaN	NaN	NaN	0.0094542	1	7891	53.878	42.518	1	197990			21618	1062	18226	18748	21618	21618		
VVHSYEELEENYTR	14	Unmodified	_VVHSYEELEENYTR_			0	0	0	P11498	P11498	P11498	PC	Pyruvate carboxylase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.412848	1766.81114	3.6337	0.0032137	-2.294	-0.0020289	1.3397	0.0011848	884.912014997849	7.7132	0.079883	7.7132	7.6865	7.7664	0	312	25	1.11600111266355	0.0160073906404907	1.11600111266355	450.481628594501	0	6.46149481703122						147	10	3	NaN	NaN	NaN	0.0058674	1	26310	33.1	27.073	1	25338			21619	655	18227	18749	21619	21619		
VVIEACDELGIILAHTNLR	19	Unmodified	_VVIEACDELGIILAHTNLR_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	712.720901	2135.14087	0.50865	0.00036253	0.26891	0.00019166	0.77756	0.00055418	713.055467003101	17.956	0.1862	17.956	17.912	18.098	0	486	37	0.999498404980629	0.0242039733351906	0.999498404980629	604.366304908747	0	14.6354069759446						579	22	5	NaN	NaN	NaN	0.0011209	1	33820	26.21	25.115	1	159130			21620	929	18228	18750	21620	21620		
VVIEDEQLVLGASQEPVGR	19	Unmodified	_VVIEDEQLVLGASQEPVGR_			0	0	0	Q6IBS0	Q6IBS0	Q6IBS0	TWF2	Twinfilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.54439	2037.07423	1.6264	0.0016582	-0.75396	-0.0007687	0.87242	0.00088947	1020.04600312762	13.318	0.079831	13.318	13.283	13.363	0	198	61	1.1918274123006	0.0397880929127559	1.1918274123006	480.592126415849	0	16.0441385905543						389	10	4	NaN	NaN	NaN	5.5391E-07	1	32298	77.347	62.398	1	95168			21621	2037	18229	18751	21621	21621		
VVIFQQEQENK	11	Unmodified	_VVIFQQEQENK_			0	0	0	P63151	P63151	P63151	PPP2R2A	Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.356616	1360.69868	1.9689	0.0013415	-0.053883	-3.6714E-05	1.9151	0.0013048	681.356716922667	6.8974	0.23062	6.8974	6.8441	7.0747	0	507	88	0.985374541851584	0.0584727763596663	0.985374541851584	398.676246911671	0	23.6577119008707						818	27	4	NaN	NaN	NaN	0.0052847	1	14230	58.916	34.226	1	365130			21622	1428	18230	18752	21622	21622		
VVIGMDVAASEFFR	14	Unmodified	_VVIGMDVAASEFFR_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.895051	1539.77555	1.0914	0.00084134	1.0631	0.00081956	2.1545	0.0016609	770.896129493628	18.009	0.31917	18.009	17.832	18.151	0	414	31	1.04781950764076	0.0201004566486325	1.04781950764076	423.444864153761	0	8.12299739882951						651	37	4	NaN	NaN	NaN	0.017034	1	19719	50.116	47.014	1	171620			21623	544	18231	18753	21623	21623		
VVIGMDVAASEFFR	14	Unmodified	_VVIGMDVAASEFFR_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.895051	1539.77555	1.7905	0.0013803	1.081	0.00083335	2.8715	0.0022136	770.896177939659	17.353	0.62956	17.353	17.255	17.885	0	270	199	1.14398322290989	0.132225430316814	1.14398322290989	462.30654879926	0	53.4349465351189						4940	72	6	NaN	NaN	NaN	6.4954E-06	1	19721	124.46	119.3	1	3725000			21624	544	18231	18753	21624	21624		
VVIGMDVAASEFFR	14	Unmodified	_VVIGMDVAASEFFR_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.895051	1539.77555	1.5283	0.0011782	2.3723	0.0018288	3.9006	0.0030069	770.898141986162	17.894	0.3458	17.894	17.734	18.08	0	264	34	1.14797626962532	0.0219662910275218	1.14797626962532	463.920213663065	0	8.87701836397633						473	40	3	NaN	NaN	NaN	0.00026216	1	19722	51.454	48.783	1	118010			21625	544	18231	18753	21625	21625		
VVIGMDVAASEFFR	14	Oxidation (M)	_VVIGM(Oxidation (M))DVAASEFFR_	VVIGM(1)DVAASEFFR	VVIGM(120)DVAASEFFR	0	1	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.892509	1555.77046	2.0738	0.0016152	-0.76648	-0.00059701	1.3073	0.0010182	778.892040280104	14.506	0.53204	14.506	14.418	14.95	0	405	94	1.05384839605172	0.0622642162087288	1.05384839605172	425.842246967349	0	25.1599127875739						1063	61	4	NaN	NaN	NaN	3.7244E-05	1	20230	119.55	87.001	1	586160			21626	544	18231	18754	21626	21626	118	
VVILNVDLLK	10	Unmodified	_VVILNVDLLK_			0	0	0	Q14690	Q14690	Q14690	PDCD11	Protein RRP5 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.365724	1124.7169	0.0097148	5.473E-06	-3.1697	-0.0017857	-3.16	-0.0017802	563.363431837537	15.916	0.15074	15.916	15.872	16.023	0	579	34	0.936845902828289	0.0222838959578864	0.936845902828289	379.840580742905	0	9.03492021078887						247	18	3	NaN	NaN	NaN	0.033835	1	7399	20.183	14.435	1	60290			21627	1766	18232	18755	21627	21627		
VVINVPIFK	9	Unmodified	_VVINVPIFK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.828778	1027.643	0.33464	0.00017228	-3.0951	-0.0015934	-2.7604	-0.0014212	514.827250945876	14.453	0.11528	14.453	14.409	14.524	0	690	88	0.86171403876517	0.0589688553709801	0.86171403876517	349.777963002126	0	23.9360219102213						742	14	3	NaN	NaN	NaN	0.012745	1	4941	34.931	29.623	1	273240			21628	1108	18233	18756	21628	21628		
VVISLQLTAEK	11	Unmodified	_VVISLQLTAEK_			0	0	0	P30041	P30041	P30041	PRDX6	Peroxiredoxin-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.863546	1199.71254	0.039123	2.3507E-05	-0.44367	-0.00026658	-0.40455	-0.00024308	600.863814681588	12.024	0.12414	12.024	11.97	12.094	0	585	52	0.932794566565362	0.0344292157937285	0.932794566565362	377.911575537773	0	13.9486223992989						433	15	4	NaN	NaN	NaN	3.3914E-05	1	9460	90.263	82.616	1	185690			21629	893	18234	18757	21629	21629		
VVLAEVIQAFSAPENAVR	18	Unmodified	_VVLAEVIQAFSAPENAVR_			0	0	0	Q99622	Q99622	Q99622	C12orf57	Protein C10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.354547	1912.04181	-0.26517	-0.00016927	0.86495	0.00055214	0.59978	0.00038287	638.355344084623	19.321	0.05319	19.321	19.304	19.357	0	570	22	0.942920803299286	0.014172805463205	0.942920803299286	570.584871622636	0	8.57631771137051						82	7	2	NaN	NaN	NaN	0.039064	1	29883	27.467	22.912	1	18641			21630	2659	18235	18758	21630	21630		
VVLAYEPVWAIGTGK	15	Unmodified	_VVLAYEPVWAIGTGK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.967853	1601.88173	-0.5406	-0.00028921	-1.4071	-0.00075273	-1.9477	-0.0010419	534.967023969681	15.961	0.1596	15.961	15.908	16.067	0	681	55	0.867820189810857	0.036644552172756	0.867820189810857	525.870692780393	0	22.2054018378098						631	19	5	NaN	NaN	NaN	0.0001377	1	21659	106	77.675	1	291870			21631	1303	18236	18759	21631	21631		
VVLAYEPVWAIGTGK	15	Unmodified	_VVLAYEPVWAIGTGK_			0	0	0	P60174	P60174	P60174	TPI1	Triosephosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.948141	1601.88173	2.0711	0.0016609	1.2897	0.0010343	3.3608	0.0026952	801.949313676233	15.961	0.33695	15.961	15.89	16.227	0	351	181	1.08996939197032	0.120088996819745	1.08996939197032	440.326264541852	0	48.5136002641591						3855	39	4	NaN	NaN	NaN	3.7664E-08	1	21660	117.21	99.112	1	6015200			21632	1303	18236	18759	21632	21632		
VVLDVGSGTGILCMFAAK	18	Unmodified	_VVLDVGSGTGILCMFAAK_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.481165	1836.94778	1.3645	0.0012546	-0.79156	-0.00072782	0.57293	0.0005268	919.982730544833	18.905	0.10637	18.905	18.86	18.967	0	267	37	1.14597988355104	0.0239582842572883	1.14597988355104	462.445215402889	0	9.66805271460237						315	13	5	NaN	NaN	NaN	2.6343E-19	1	28163	142.08	89.215	1	84614			21633	2681	18237	18760	21633	21633		
VVLEAPLITESALEVVR	17	Unmodified	_VVLEAPLITESALEVVR_			0	0	0	Q92797	Q92797	Q92797	SYMPK	Symplekin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.535309	1837.05606	1.5321	0.0014088	-5.8648	-0.0053929	-4.3327	-0.0039841	920.032069477016	18.426	0.13305	18.426	18.364	18.497	0	228	46	1.17191150690002	0.0298923356935374	1.17191150690002	472.909392425175	0	12.0626568028111						379	16	3	NaN	NaN	NaN	0.013107	1	28168	21.668	20.08	1	79209			21634	2433	18238	18761	21634	21634		
VVLEGPAPWGFR	12	Unmodified	_VVLEGPAPWGFR_			0	0	0	Q9NR12	Q9NR12	Q9NR12	PDLIM7	PDZ and LIM domain protein 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.361505	1326.70846	0.92382	0.00061375	2.8644	0.001903	3.7882	0.0025167	664.364094354876	14.205	0.1862	14.205	14.125	14.311	0	513	40	0.981336640919867	0.026255437790293	0.981336640919867	397.144806963615	0	10.6255186428146						361	22	3	NaN	NaN	NaN	0.010646	1	13192	22.898	15.251	1	133170			21635	3009	18239	18762	21635	21635		
VVLEHEEVR	9	Unmodified	_VVLEHEEVR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.301113	1108.58767	2.0007	0.001111	0.10187	5.657E-05	2.1026	0.0011676	555.301161284984	3.6874	0.1241	3.6874	3.6608	3.7849	-4.4409E-16	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	374.977442063549	0	7.39863256583811						194	15	3	NaN	NaN	NaN	0.00091058	1	6955	96.311	81.776	1	46486			21636	3452	18240	18763	21636	21636		
VVLEHEEVR	9	Unmodified	_VVLEHEEVR_			0	0	0	Q9Y678	Q9Y678	Q9Y678	COPG1	Coatomer subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	370.536501	1108.58767	-0.0077393	-2.8677E-06	2.3003	0.00085233	2.2925	0.00084946	370.537144942529	3.6962	0.1241	3.6962	3.6608	3.7849	0	861	25	0.745211914437924	0.0164161478331188	0.745211914437924	453.289719637269	0	9.98544293861835						201	15	3	NaN	NaN	NaN	0.00085085	1	6956	72.492	65.73	1	58000			21637	3452	18240	18763	21637	21637		
VVLHDGDPNEPVSDYINANIIMPEFETK	28	Unmodified	_VVLHDGDPNEPVSDYINANIIMPEFETK_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1052.84465	3155.51213	1.3806	0.0014536	-0.066976	-7.0516E-05	1.3136	0.0013831	1053.17918086494	17.273	0.070953	17.273	17.238	17.309	0	315	34	1.11400032671325	0.0220116788084446	1.11400032671325	672.193587226092	0	13.2819614001115						139	9	3	NaN	NaN	NaN	0.01813	1	38418	15.071	15.053	1	24480			21638	1556	18241	18764	21638	21638		
VVLIGDSGVGK	11	Unmodified	_VVLIGDSGVGK_			0	0	0	Q15907;P62491	Q15907	Q15907	RAB11B;RAB11A	Ras-related protein Rab-11B;Ras-related protein Rab-11A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	522.308406	1042.60226	1.0488	0.00054781	-0.92865	-0.00048504	0.12018	6.2769E-05	522.308128452402	8.0237	0.15089	8.0237	7.9793	8.1302	0	660	49	0.882057989648486	0.0325232324981577	0.882057989648486	357.967851099936	0	13.1989866707389						415	18	4	NaN	NaN	NaN	0.00088533	1	5304	61.48	12.32	1	219670			21639	1875	18242	18765	21639	21639		
VVLLEDLASQVGLR	14	Unmodified	_VVLLEDLASQVGLR_			0	0	0	Q96HY6	Q96HY6	Q96HY6	DDRGK1	DDRGK domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.443223	1510.87189	0.82919	0.00062723	1.3757	0.0010406	2.2049	0.0016679	756.44390014224	18.585	0.062059	18.585	18.559	18.621	0	408	76	1.0518390438467	0.0501922855323891	1.0518390438467	425.141691561514	0	20.287165892359						302	8	3	NaN	NaN	NaN	4.4005E-05	1	18844	67.548	59.583	1	60946			21640	2553	18243	18766	21640	21640		
VVLLGEFLHPCEDDIVCK	18	Unmodified	_VVLLGEFLHPCEDDIVCK_			0	0	0	Q9NY12	Q9NY12	Q9NY12	GAR1	H/ACA ribonucleoprotein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.023592	2142.04895	0.093718	6.7011E-05	-2.1941	-0.0015688	-2.1004	-0.0015018	715.356606825804	15.978	0.17734	15.978	15.916	16.094	0	624	67	0.906433495720521	0.0446698550216929	0.906433495720521	548.08137834334	0	27.0099415194551						994	21	6	NaN	NaN	NaN	5.877E-07	1	33914	78.157	75.072	1	413530			21641	3107	18244	18767	21641	21641		
VVLLHGPPGTGK	12	Unmodified	_VVLLHGPPGTGK_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	587.850773	1173.68699	1.796	0.0010558	0.078549	4.6175E-05	1.8746	0.001102	587.850722678279	5.8509	0.19513	5.8509	5.8066	6.0017	0	531	64	0.969216233931596	0.0424654908030729	0.969216233931596	392.766406575271	0	17.2087689436652						589	23	4	NaN	NaN	NaN	4.3181E-05	1	8711	129.28	105.16	1	260450			21642	1860	18245	18768	21642	21642		
VVLLTGETSTDLK	13	Unmodified	_VVLLTGETSTDLK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.387582	1374.76061	1.7165	0.0011816	-0.082084	-5.6506E-05	1.6344	0.0011251	688.387286132465	10.179	0.1951	10.179	10.126	10.321	0	444	55	1.02770517576159	0.0362208047125181	1.02770517576159	415.760176581544	0	14.6531987172706						520	23	4	NaN	NaN	NaN	2.5455E-07	1	14653	113.46	87.603	1	255490			21643	350	18246	18769	21643	21643		
VVLMQCNIESVEEGVK	16	Unmodified	_VVLMQCNIESVEEGVK_			0	0	0	Q9UHY1	Q9UHY1	Q9UHY1	NRBP1	Nuclear receptor-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.457887	1832.90122	1.9586	0.0017969	-2.5821	-0.0023689	-0.62345	-0.00057199	917.454810892122	12.653	0.14187	12.653	12.564	12.706	0	285	64	1.13399579921816	0.041952970811898	1.13399579921816	457.61677192858	0	16.9298537869287						306	17	3	NaN	NaN	NaN	0.0078261	1	28052	65.408	59.38	1	69605			21644	3226	18247	18770	21644	21644		
VVLPIEAPIR	10	Unmodified	_VVLPIEAPIR_			0	0	0	P00403	P00403	P00403	MT-CO2	Cytochrome c oxidase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.850242	1105.68593	0.21583	0.00011954	-1.0414	-0.00057677	-0.82556	-0.00045723	553.849756399579	13.088	0.21281	13.088	13.026	13.238	0	645	70	0.892219381832517	0.0467359476226404	0.892219381832517	361.822298144855	0	18.9528588137929						973	25	4	NaN	NaN	NaN	0.0042039	1	6879	65.156	59.848	1	891590			21645	477	18248	18771	21645	21645		
VVLPTFILEK	10	Unmodified	_VVLPTFILEK_			0	0	0	Q9BXB5;Q9BXB4	Q9BXB5	Q9BXB5	OSBPL10;OSBPL11	Oxysterol-binding protein-related protein 10;Oxysterol-binding protein-related protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	579.860275	1157.706	0.050676	2.9385E-05	-1.4378	-0.00083371	-1.3871	-0.00080432	579.85936872245	16.085	0.15079	16.085	16.023	16.174	0	594	58	0.926715457081489	0.0385277278077789	0.926715457081489	375.603557654537	0	15.6155285016196						481	18	3	NaN	NaN	NaN	0.0062875	1	8307	52.591	33.335	1	126430			21646	2784	18249	18772	21646	21646		
VVLPTFILEPR	11	Unmodified	_VVLPTFILEPR_			0	0	0	Q9BZF1	Q9BZF1	Q9BZF1	OSBPL8	Oxysterol-binding protein-related protein 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.389731	1282.76491	0.24767	0.0001591	0.50815	0.00032643	0.75583	0.00048554	642.390196772882	17.131	0.133	17.131	17.069	17.202	0	486	46	0.999498404980629	0.0302486975418772	0.999498404980629	404.637648130677	0	12.2459043169746						312	16	3	NaN	NaN	NaN	0.0029893	1	11860	44.57	35.593	1	59835			21647	2809	18250	18773	21647	21647		
VVLPTFILER	10	Unmodified	_VVLPTFILER_			0	0	0	Q96SU4	Q96SU4	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	593.863349	1185.71214	0.22088	0.00013117	-1.8258	-0.0010843	-1.6049	-0.00095309	593.862315560423	16.493	0.11532	16.493	16.44	16.555	0	576	52	0.938871150116794	0.0344435264465663	0.938871150116794	380.424508812314	0	13.9562938200507						351	14	3	NaN	NaN	NaN	0.00064025	1	9044	74.269	69.118	1	123240			21648	2625	18251	18774	21648	21648		
VVLPYLVPK	9	Unmodified	_VVLPYLVPK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.331153	1026.64775	-0.020365	-1.0475E-05	-0.90514	-0.00046554	-0.92551	-0.00047602	514.330543074984	13.185	0.15076	13.185	13.114	13.265	0	663	100	0.880024865079826	0.0671584233382904	0.880024865079826	357.215068867117	0	27.2605942965241						543	18	3	NaN	NaN	NaN	0.0070071	1	4911	53.679	33.446	1	177070			21649	2420	18252	18775	21649	21649		
VVLQELR	7	Unmodified	_VVLQELR_			0	0	0	Q13404;Q15819	Q13404;Q15819	Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	428.766178	855.517802	-0.82525	-0.00035384	0.43642	0.00018712	-0.38883	-0.00016672	428.766355352183	6.9594	0.18628	6.9594	6.9062	7.0925	0	759	46	0.814815566123307	0.0306327620085797	0.814815566123307	331.619403260575	0	12.4671381842147						309	22	2	NaN	NaN	NaN	0.024352	1	1647	49.058	15.245	1	103680			21650	1871;1659	18253	18776	21650	21650		
VVLSVSSGGQHTVLLVK	17	Unmodified	_VVLSVSSGGQHTVLLVK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.009261	1722.00397	2.5023	0.002157	-0.61381	-0.00052911	1.8885	0.0016279	862.510431731472	10.445	0.12417	10.445	10.41	10.534	0	168	34	1.21171599086077	0.0218609305816932	1.21171599086077	489.21668359669	0	8.8261044998805						328	15	4	NaN	NaN	NaN	4.767E-07	1	25116	109.47	91.737	1	101860			21651	758	18254	18777	21651	21651		
VVLSVSSGGQHTVLLVK	17	Unmodified	_VVLSVSSGGQHTVLLVK_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.0086	1722.00397	1.1414	0.0006563	1.1462	0.00065906	2.2876	0.0013154	575.343166724705	10.445	0.1153	10.445	10.41	10.525	0	585	37	0.932794566565362	0.0243181264417436	0.932794566565362	564.905305058632	0	14.7271855223279						305	14	4	NaN	NaN	NaN	0.00013749	1	25117	49.097	44.569	1	97952			21652	758	18254	18777	21652	21652		
VVMALGDYMGASCHACIGGTNVR	23	Unmodified	_VVMALGDYMGASCHACIGGTNVR_			0	0	0	P60842	P60842	P60842	EIF4A1	Eukaryotic initiation factor 4A-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.706051	2438.09633	1.694	0.0013784	0.080582	6.557E-05	1.7745	0.001444	814.040816786204	12.148	0.12417	12.148	12.112	12.236	0	420	58	1.04379886199097	0.0382146049252179	1.04379886199097	630.646756664048	0	23.088659636319						627	15	5	NaN	NaN	NaN	1.1215E-14	1	36515	111.03	107.39	1	171800			21653	1311	18255	18778	21653	21653		
VVMDGVISDHECQELQR	17	Unmodified	_VVMDGVISDHECQELQR_			0	0	0	Q32P28	Q32P28	Q32P28	LEPRE1	Prolyl 3-hydroxylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.315546	2013.92481	0.75535	0.00050783	1.5718	0.0010567	2.3271	0.0015646	672.651109662664	8.831	0.07981	8.831	8.8044	8.8842	0	627	70	0.90440375274676	0.0466647041412755	0.90440375274676	547.077927353504	0	28.2276909451546						523	10	4	NaN	NaN	NaN	0.0001204	1	31863	77.696	74.981	1	126190			21654	1928	18256	18779	21654	21654		
VVNAPIFHVNSDDPEAVMYVCK	22	Unmodified	_VVNAPIFHVNSDDPEAVMYVCK_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	835.403132	2503.18757	1.5641	0.0013066	-0.54502	-0.00045531	1.0191	0.00085133	835.736858356764	13.921	0.062083	13.921	13.886	13.948	0	525	31	0.973257487423603	0.020206269780618	0.973257487423603	587.94013486151	0	12.2065097195537						168	8	4	NaN	NaN	NaN	6.7131E-05	1	36844	49.967	47.517	1	27168			21655	1526	18257	18780	21655	21655		
VVNAVLTQIDQIK	13	Unmodified	_VVNAVLTQIDQIK_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	720.924666	1439.83478	1.8893	0.0013621	0.19257	0.00013883	2.0819	0.0015009	720.92482582975	13.247	0.15962	13.247	13.194	13.354	0	369	100	1.07793901817685	0.0662812725043382	1.07793901817685	435.886094728643	0	26.8021516415885						802	19	5	NaN	NaN	NaN	2.3487E-11	1	16680	179.95	146.22	1	404200			21656	1860	18258	18781	21656	21656		
VVNEINIEDLCLTK	14	Unmodified	_VVNEINIEDLCLTK_			0	0	0	Q8N5K1	Q8N5K1	Q8N5K1	CISD2	CDGSH iron-sulfur domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.434738	1658.85492	2.7709	0.0023011	-1.2955	-0.0010758	1.4754	0.0012253	830.434080554079	14.498	0.15958	14.498	14.444	14.604	0	321	49	1.10999792833052	0.0320236055911389	1.10999792833052	448.285365574065	0	12.9330995788567						520	19	4	NaN	NaN	NaN	6.9621E-05	1	23295	66.485	43.53	1	147610			21657	2257	18259	18782	21657	21657		
VVNQLAAAYEQDLLPGGCTLR	21	Unmodified	_VVNQLAAAYEQDLLPGGCTLR_			0	0	0	Q9H078	Q9H078	Q9H078	CLPB	Caseinolytic peptidase B protein homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.58881	2287.16307	-0.15248	-0.00017453	-1.3378	-0.0015313	-1.4903	-0.0017058	1144.58662983118	15.686	0.23055	15.686	15.624	15.854	0	66	37	1.27913350869533	0.0237455493197651	1.27913350869533	515.415442443968	0	9.56805738065998						370	27	4	NaN	NaN	NaN	0.0008932	1	35544	46.823	46.07	1	74731			21658	2839	18260	18783	21658	21658		
VVNVELPIEANLVWQLGK	18	Unmodified	_VVNVELPIEANLVWQLGK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1011.07513	2020.13571	1.2234	0.0012369	-0.5286	-0.00053446	0.69478	0.00070248	1011.5762084842	19.694	0.088666	19.694	19.649	19.738	0	144	70	1.22760721615852	0.0456966998015786	1.22760721615852	495.048059115543	0	18.4277692791242						484	11	4	NaN	NaN	NaN	8.905E-05	1	31995	80.815	75.998	1	130990			21659	2415	18261	18784	21659	21659		
VVPGYGHAVLR	11	Unmodified	_VVPGYGHAVLR_			0	0	0	O75390	O75390	O75390	CS	Citrate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	584.33529	1166.65603	2.1123	0.0012343	5.1057	0.0029834	7.2179	0.0042177	584.338211806786	5.5583	0.18623	5.5583	5.5051	5.6913	0	570	76	0.942920803299286	0.0505821658502509	0.942920803299286	382.137139753166	0	20.4994142805013						746	22	4	NaN	NaN	NaN	0.041631	1	8522	51.864	43.101	1	451370			21660	329	18262	18785	21660	21660		
VVPLADIITPNQFEAELLSGR	21	Unmodified	_VVPLADIITPNQFEAELLSGR_			0	0	0	O00764	O00764	O00764	PDXK	Pyridoxal kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	761.417876	2281.2318	0.11207	8.5331E-05	-0.95544	-0.00072749	-0.84337	-0.00064216	761.751635819124	20.013	0.026587	20.013	19.995	20.022	0	570	46	0.942920803299286	0.0303829256271585	0.942920803299286	569.919720409968	0	18.3640327141778						133	4	5	NaN	NaN	NaN	9.2703E-06	1	35476	71.912	71.514	1	36580			21661	99	18263	18786	21661	21661		
VVPLVQMGETDANVAK	16	Unmodified	_VVPLVQMGETDANVAK_			0	0	0	Q96EY8	Q96EY8	Q96EY8	MMAB	Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.94273	1669.87091	1.7766	0.0014852	-1.4392	-0.0012031	0.33746	0.0002821	835.942009099434	11.695	0.22162	11.695	11.58	11.802	0	306	28	1.12000185836644	0.0180021182425405	1.12000185836644	452.300849545322	0	7.26996416469547						380	26	4	NaN	NaN	NaN	2.8053E-06	1	23625	91.245	76.789	1	85029			21662	2523	18264	18787	21662	21662		
VVPSDLYPLVLGFLR	15	Unmodified	_VVPSDLYPLVLGFLR_			0	0	0	Q14978	Q14978	Q14978	NOLC1	Nucleolar and coiled-body phosphoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.492716	1686.97088	1.6345	0.0013803	-1.8794	-0.0015871	-0.24493	-0.00020684	844.490795897381	20.146	0.062085	20.146	20.119	20.182	0	354	94	1.08796502040166	0.0620586045631193	1.08796502040166	439.326460259984	0	25.0596173223694						480	8	4	NaN	NaN	NaN	4.5684E-06	1	24121	101.45	99.144	1	215450			21663	1781	18265	18788	21663	21663		
VVQGLFDNFLR	11	Unmodified	_VVQGLFDNFLR_			0	0	0	Q8WVB6	Q8WVB6	Q8WVB6	CHTF18	Chromosome transmission fidelity protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.358962	1306.70337	0.18618	0.00012183	-1.6579	-0.0010849	-1.4717	-0.00096302	654.356721851805	16.51	0.097546	16.51	16.466	16.564	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	397.20749411409	0	8.17306954796322						175	12	3	NaN	NaN	NaN	0.004159	1	12568	47.561	40.871	1	45004			21664	2377	18266	18789	21664	21664		
VVQLHEYSEELEK	13	Unmodified	_VVQLHEYSEELEK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.938511	1601.7937	-0.10169	-5.4398E-05	0.67052	0.00035869	0.56883	0.00030429	534.938848805417	7.456	0.1064	7.456	7.4117	7.5181	0	729	55	0.835224628594324	0.036700593052475	0.835224628594324	506.119076336733	0	22.2393708480441						354	13	3	NaN	NaN	NaN	0.0022639	1	21639	29.131	21.574	1	97237			21665	1764	18267	18790	21665	21665		
VVQLHEYSEELEK	13	Unmodified	_VVQLHEYSEELEK_			0	0	0	Q14683	Q14683	Q14683	SMC1A	Structural maintenance of chromosomes protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.904128	1601.7937	2.2475	0.0018023	0.12201	9.7844E-05	2.3695	0.0019001	801.904110102652	7.456	0.12414	7.456	7.4205	7.5447	0	372	37	1.07593298845566	0.024074020010092	1.07593298845566	434.656041836157	0	9.72543677063976						339	15	4	NaN	NaN	NaN	0.0015692	1	21640	58.476	54.971	1	96976			21666	1764	18267	18790	21666	21666		
VVQMLGSLGGQINK	14	Unmodified	_VVQMLGSLGGQINK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.403044	1442.79153	2.235	0.0016145	0.27136	0.00019603	2.5063	0.0018106	722.403441562334	11.5	0.23062	11.5	11.447	11.678	0	351	61	1.08996939197032	0.0401067904857699	1.08996939197032	440.742220144714	0	16.217662635116						637	27	4	NaN	NaN	NaN	0.00012328	1	16760	83.775	76.217	1	248530			21667	1465	18268	18791	21667	21667		
VVQVFSEYFK	10	Unmodified	_VVQVFSEYFK_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.329339	1244.64412	0.97115	0.00060535	0.93445	0.00058247	1.9056	0.0011878	623.329554551486	13.77	0.12412	13.77	13.726	13.85	0	516	43	0.979317271586824	0.0282653130088721	0.979317271586824	396.596829181533	0	11.4466821329295						252	15	3	NaN	NaN	NaN	0.00072042	1	10770	90.761	66.64	1	61228			21668	2787	18269	18792	21668	21668		
VVQVSAGDSHTAALTDDGR	19	Unmodified	_VVQVSAGDSHTAALTDDGR_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	949.963768	1897.91298	2.9563	0.0028084	-1.5913	-0.0015117	1.3651	0.0012968	949.962350885046	5.8066	0.16847	5.8066	5.7711	5.9396	0	201	64	1.18983705239708	0.0418148026585834	1.18983705239708	480.027603841837	0	16.8697549676076						733	20	5	NaN	NaN	NaN	2.9196E-15	1	29560	153.26	136.97	1	291980			21669	758	18270	18793	21669	21669		
VVQVSAGDSHTAALTDDGR	19	Unmodified	_VVQVSAGDSHTAALTDDGR_			0	0	0	P18754	P18754	P18754	RCC1	Regulator of chromosome condensation	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.644937	1897.91298	1.6321	0.0010341	1.2027	0.00076208	2.8348	0.0017962	633.645739282962	5.8066	0.15072	5.8066	5.7623	5.913	0	582	73	0.934820374997243	0.0486632438159282	0.934820374997243	565.713406451963	0	29.4489189200569						583	18	4	NaN	NaN	NaN	1.2994E-07	1	29561	102.26	100.55	1	176230			21670	758	18270	18793	21670	21670		
VVRPDSELGERPPEDNQSFQYDHEAFLGK	29	Unmodified	_VVRPDSELGERPPEDNQSFQYDHEAFLGK_			0	0	2	Q15293	Q15293	Q15293	RCN1	Reticulocalbin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	840.653638	3358.58545	2.1433	0.0018018	-0.10898	-9.1612E-05	2.0344	0.0017102	840.90449439784	10.055	0.097527	10.055	10.01	10.108	0	441	52	1.02971785871157	0.0341920120016164	1.02971785871157	828.228440901662	0	27.5015107796843						498	12	5	NaN	NaN	NaN	0.00075475	1	38583	25.456	24.933	1	98818			21671	1831	18271	18794	21671	21671		
VVSEDFLQDVSASTK	15	Unmodified	_VVSEDFLQDVSASTK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.906867	1623.79918	3.5129	0.0028557	0.25662	0.00020861	3.7696	0.0030643	812.90724139536	12.928	0.31926	12.928	12.857	13.176	0	318	70	1.11199926528787	0.0460307788165002	1.11199926528787	449.173923931345	0	18.5933805786021						1333	37	5	NaN	NaN	NaN	1.2555E-33	1	22304	285.5	258.92	1	1084600			21672	611	18272	18795	21672	21672		
VVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLR	34	Unmodified	_VVSIGVPVSELLDDPSGPAGSLTSVEFCGGTHLR_			0	0	0	P49588	P49588	P49588	AARS	Alanine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1151.58372	3451.72933	1.3388	0.0015418	-0.85612	-0.00098589	0.48273	0.0005559	1151.91709048758	18.993	0.15075	18.993	18.914	19.064	0	312	64	1.11600111266355	0.0419876198535674	1.11600111266355	673.147031396257	0	25.3259977423915						838	18	6	NaN	NaN	NaN	0.045887	1	38636	7.3589	7.2757	1	204900			21673	1136	18273	18796	21673	21673		
VVSISSEHLEPITPTK	16	Unmodified	_VVSISSEHLEPITPTK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	579.652482	1735.93562	0.36204	0.00020986	0.093576	5.4241E-05	0.45562	0.0002641	579.652650672183	8.973	0.079816	8.973	8.9287	9.0085	0	630	100	0.902373728295776	0.0669444699309412	0.902373728295776	546.447307449726	0	40.5393288781801						503	10	3	NaN	NaN	NaN	0.014786	1	25496	34.472	30.968	1	118460			21674	69	18274	18797	21674	21674		
VVSISSEHLEPITPTK	16	Unmodified	_VVSISSEHLEPITPTK_			0	0	0	O00267	O00267	O00267	SUPT5H	Transcription elongation factor SPT5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.975084	1735.93562	1.7972	0.0015618	-0.59964	-0.00052107	1.1976	0.0010407	868.974787018579	8.973	0.062093	8.973	8.9375	8.9996	0	213	31	1.18187287897418	0.0199159054005791	1.18187287897418	477.137282767055	0	8.0403071732436						113	8	3	NaN	NaN	NaN	0.00025383	1	25497	58.313	56.471	1	17247			21675	69	18274	18797	21675	21675		
VVSLEAELQDISSQESK	17	Unmodified	_VVSLEAELQDISSQESK_			0	0	0	Q92614	Q92614	Q92614	MYO18A	Unconventional myosin-XVIIIa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.473103	1860.93165	1.5055	0.0014023	-6.8315	-0.0063633	-5.326	-0.004961	931.467317176155	15.34	0.30167	15.34	15.251	15.553	-1.7764E-15	246	58	1.1599488233373	0.0379157076818644	1.1599488233373	468.037006941125	0	15.2989114540565						598	35	4	NaN	NaN	NaN	0.0030558	1	28717	56.08	50.245	1	137160			21676	2418	18275	18798	21676	21676		
VVSLSEYR	8	Unmodified	_VVSLSEYR_			0	0	0	O00567	O00567	O00567	NOP56	Nucleolar protein 56	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	476.758549	951.502546	0.26192	0.00012487	1.171	0.00055827	1.4329	0.00068315	476.759213107736	6.3919	0.1596	6.3919	6.3476	6.5072	0	690	34	0.86171403876517	0.0223985529654932	0.86171403876517	350.147630700172	0	9.10139547362888						247	19	3	NaN	NaN	NaN	0.00050634	1	3274	108.92	86.996	1	55491			21677	92	18276	18799	21677	21677		
VVSNDDGSISYESR	14	Unmodified	_VVSNDDGSISYESR_			0	0	0	A3KN83	A3KN83	A3KN83	SBNO1	Protein strawberry notch homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.349716	1526.68488	2.4558	0.0018771	-3.464	-0.0026477	-1.0083	-0.00077067	764.347266584345	4.9553	0.07979	4.9553	4.9287	5.0085	0	465	31	1.01360860968299	0.0201476911078267	1.01360860968299	409.650867664625	0	8.14270820602172						164	10	4	NaN	NaN	NaN	0.003498	1	19308	46.768	45.716	1	34802			21678	8	18277	18800	21678	21678		
VVSNFMDFDETGVLK	15	Oxidation (M)	_VVSNFM(Oxidation (M))DFDETGVLK_	VVSNFM(1)DFDETGVLK	VVSNFM(52)DFDETGVLK	0	1	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	858.911095	1715.80764	1.8228	0.0015656	1.6472	0.0014148	3.47	0.0029804	859.413577347674	13.079	0.079784	13.079	13.061	13.141	0	270	22	1.14398322290989	0.0139785476457925	1.14398322290989	461.883651818347	0	5.64384381209049						150	10	3	NaN	NaN	NaN	0.037596	1	24926	51.569	47.041	1	28301			21679	2848	18278	18801	21679	21679	625	
VVSPIIDVINMDNFQYVGASADLK	24	Unmodified	_VVSPIIDVINMDNFQYVGASADLK_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	870.115756	2607.32544	0.73565	0.0006401	-0.85632	-0.0007451	-0.12066	-0.00010499	870.114701176905	19.818	0.026601	19.818	19.809	19.836	0	495	19	0.993446994398923	0.0121053314145333	0.993446994398923	600.004176653541	0	7.31115947750186						55	4	3	NaN	NaN	NaN	0.045403	1	37267	15.78	15.78	1	8330.1			21680	1586	18279	18802	21680	21680		
VVSPWNSEDAK	11	Unmodified	_VVSPWNSEDAK_			0	0	0	P11177	P11177	P11177	PDHB	Pyruvate dehydrogenase E1 component subunit beta, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.30131	1230.58807	1.6411	0.0010114	0.5756	0.00035474	2.2167	0.0013661	616.30004292653	6.5161	0.23943	6.5161	6.4096	6.6491	0	576	58	0.938871150116794	0.0384903768248059	0.938871150116794	380.264893936571	0	15.5895077392065						493	28	2	NaN	NaN	NaN	0.0068456	1	10320	61.48	30.887	1	270290			21681	644	18280	18803	21681	21681		
VVSQSLQHYLELGR	14	Unmodified	_VVSQSLQHYLELGR_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.630011	1627.8682	-1.1995	-0.0006521	-0.32467	-0.0001765	-1.5242	-0.0008286	543.629936294847	11.828	0.079824	11.828	11.784	11.864	0	729	25	0.835224628594324	0.0163159042618426	0.835224628594324	506.049663132864	0	9.88555362562687						155	10	3	NaN	NaN	NaN	0.00020682	1	22414	58.476	47.505	1	39968			21682	407	18281	18804	21682	21682		
VVSQSLQHYLELGR	14	Unmodified	_VVSQSLQHYLELGR_			0	0	0	O95155	O95155	O95155	UBE4B	Ubiquitin conjugation factor E4 B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	814.941379	1627.8682	1.5424	0.0012569	0.29887	0.00024356	1.8412	0.0015005	815.442823368995	11.82	0.11528	11.82	11.749	11.864	0	276	25	1.13998907770044	0.0159787796395696	1.13998907770044	460.470214588597	0	6.45423033731026						166	14	3	NaN	NaN	NaN	0.0032805	1	22417	56.938	50.191	1	33046			21683	407	18281	18804	21683	21683		
VVSQYHELVVQAR	13	Unmodified	_VVSQYHELVVQAR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.947452	1526.82053	0.11762	5.9981E-05	0.45556	0.00023231	0.57319	0.0002923	509.947506104182	6.4717	0.16847	6.4717	6.4363	6.6047	0	708	58	0.849494101904619	0.0387314421406671	0.849494101904619	514.982273868934	0	23.4798641910563						477	20	4	NaN	NaN	NaN	0.0001668	1	19331	77.358	72.831	1	156710			21684	1915	18282	18805	21684	21684		
VVSQYHELVVQAR	13	Unmodified	_VVSQYHELVVQAR_			0	0	0	Q16891	Q16891	Q16891	IMMT	MICOS complex subunit MIC60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.41754	1526.82053	2.5011	0.0019119	-1.6225	-0.0012402	0.87866	0.00067166	764.416138796302	6.4717	0.20393	6.4717	6.4185	6.6225	0	393	40	1.0618830335572	0.0261071745349262	1.0618830335572	429.160671508945	0	10.5512304091321						559	24	5	NaN	NaN	NaN	1.3996E-16	1	19332	174.23	153.08	1	293530			21685	1915	18282	18805	21685	21685		
VVSQYSSLLSPMSVNAVMK	19	Unmodified	_VVSQYSSLLSPMSVNAVMK_			0	0	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1020.52884	2039.04313	1.1865	0.0012108	0.49651	0.00050671	1.683	0.0017175	1021.03147200494	16.005	0.13298	16.005	15.952	16.085	0	150	52	1.22363604450103	0.0337619154736248	1.22363604450103	493.415400276828	0	13.6140555129887						755	16	6	NaN	NaN	NaN	5.4684E-07	1	32331	105.78	98.573	1	292760			21686	1175	18283	18806	21686	21686		
VVSQYSSLLSPMSVNAVMK	19	Oxidation (M)	_VVSQYSSLLSPMSVNAVM(Oxidation (M))K_	VVSQYSSLLSPMSVNAVM(1)K	VVSQYSSLLSPM(-38)SVNAVM(38)K	0	1	0	P50991	P50991	P50991	CCT4	T-complex protein 1 subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1028.5263	2055.03805	1.3694	0.0014084	-0.78811	-0.00081059	0.58127	0.00059785	1029.02689796607	14.081	0.088671	14.081	14.036	14.125	0	153	49	1.22165005014568	0.0317824577719281	1.22165005014568	492.588647233689	0	12.8151903057419						288	11	4	NaN	NaN	NaN	8.4211E-14	1	32626	120.75	94.23	2	50568			21687	1175	18283	18807	21687	21687	429	
VVTDLISLIR	10	Unmodified	_VVTDLISLIR_			0	0	0	P38432	P38432	P38432	COIL	Coilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.852981	1127.69141	-1.0284	-0.00058091	-2.6073	-0.0014727	-3.6357	-0.0020536	564.851388515224	16.741	0.16846	16.741	16.67	16.839	0	654	46	0.886123392477847	0.030475726379646	0.886123392477847	359.263856316834	0	12.3558717399304						327	20	3	NaN	NaN	NaN	0.00049123	1	7473	111.39	82.29	1	99336			21688	1005	18284	18808	21688	21688		
VVTDTDETELAR	12	Unmodified	_VVTDTDETELAR_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	674.833171	1347.65179	2.5201	0.0017006	0.27398	0.00018489	2.794	0.0018855	674.833820984026	5.6026	0.27494	5.6026	5.5228	5.7978	0	495	52	0.993446994398923	0.0343103064176149	0.993446994398923	401.98143898912	0	13.8830822617318						815	32	5	NaN	NaN	NaN	4.342E-11	1	13827	159.11	138.88	1	663970			21689	527	18285	18809	21689	21689		
VVTLLSDPENIVK	13	Unmodified	_VVTLLSDPENIVK_			0	0	0	Q99570	Q99570	Q99570	PIK3R4	Phosphoinositide 3-kinase regulatory subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.911224	1425.8079	1.7316	0.0012362	3.4023	0.002429	5.1339	0.0036651	713.913381422751	13.806	0.12412	13.806	13.753	13.877	0	384	34	1.06790610341098	0.0220845924039434	1.06790610341098	431.869496470288	0	8.93118015786075						259	15	3	NaN	NaN	NaN	0.050425	1	16266	25.613	22.735	1	66294			21690	2651	18286	18810	21690	21690		
VVTLLYDLVTEK	12	Unmodified	_VVTLLYDLVTEK_			0	0	0	Q9H173	Q9H173	Q9H173	SIL1	Nucleotide exchange factor SIL1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.902868	1391.79118	0.51217	0.00035693	-0.30727	-0.00021414	0.2049	0.0001428	696.902905527286	17.601	0.088676	17.601	17.566	17.654	0	450	40	1.02367897599655	0.0261793407485973	1.02367897599655	414.080913938838	0	10.5896141248211						270	11	3	NaN	NaN	NaN	1.6462E-05	1	15213	85.622	78.065	1	61150			21691	2854	18287	18811	21691	21691		
VVTLQGQIIEQSGTMTGGGSK	21	Unmodified	_VVTLQGQIIEQSGTMTGGGSK_			0	0	0	Q9NTJ3	Q9NTJ3	Q9NTJ3	SMC4	Structural maintenance of chromosomes protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1046.04116	2090.06777	1.931	0.0020199	-0.42664	-0.00044628	1.5043	0.0015736	1046.5421053029	11.252	0.053192	11.252	11.225	11.279	0	180	31	1.203763835057	0.0198885785601712	1.203763835057	485.322042787344	0	8.01848775802586						108	7	3	NaN	NaN	NaN	1.1419E-05	1	33190	84.105	81.864	1	17926			21692	3042	18288	18812	21692	21692		
VVTLVEDPAGCVWGVAYR	18	Unmodified	_VVTLVEDPAGCVWGVAYR_			0	0	0	Q8WUX2	Q8WUX2	Q8WUX2	CHAC2	Putative glutathione-specific gamma-glutamylcyclotransferase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.006393	1989.99823	1.4287	0.001423	-0.47789	-0.00047598	0.9508	0.00094701	996.005171070613	16.014	0.16846	16.014	15.934	16.103	0	192	49	1.1958073123591	0.0318479545108823	1.1958073123591	482.274188804288	0	12.8444158754226						454	20	4	NaN	NaN	NaN	1.1801E-07	1	31457	119.52	117.67	1	120710			21693	2374	18289	18813	21693	21693		
VVTMEVEAR	9	Unmodified	_VVTMEVEAR_			0	0	0	Q99829	Q99829	Q99829	CPNE1	Copine-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	517.270967	1032.52738	1.3997	0.00072402	-0.55074	-0.00028488	0.84895	0.00043914	517.270604462914	5.6913	0.23944	5.6913	5.6026	5.8421	0	660	43	0.882057989648486	0.0284696767536509	0.882057989648486	358.013368490067	0	11.5553909085498						353	28	3	NaN	NaN	NaN	0.0069061	1	5061	67.464	59.281	1	90796			21694	2678	18290	18814	21694	21694		
VVTVFSVADGYSENNVFYGHHAK	23	Unmodified	_VVTVFSVADGYSENNVFYGHHAK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	847.411672	2539.21319	1.4078	0.001193	0.35526	0.00030106	1.763	0.001494	847.746532990392	13.017	0.097525	13.017	12.981	13.079	0	417	25	1.04580932352505	0.0160825837476568	1.04580932352505	631.718860924926	0	9.71464994360042						313	12	5	NaN	NaN	NaN	4.717E-18	1	36984	155.28	142.22	1	109530			21695	300	18291	18815	21695	21695		
VVTVHLEK	8	Unmodified	_VVTVHLEK_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.779285	923.544017	1.0265	0.00047506	1.2068	0.00055848	2.2333	0.0010335	462.779846481716	4.113	0.24831	4.113	4.0775	4.3258	0	699	34	0.85560534332665	0.0224016640756647	0.85560534332665	347.815265918206	0	9.10658261809499						437	29	3	NaN	NaN	NaN	0.029603	1	2777	51.864	16.933	1	174300			21696	3332	18292	18816	21696	21696		
VVTVSEYYLRPVSQQEFDK	19	Unmodified	_VVTVSEYYLRPVSQQEFDK_			0	0	1	Q92917	Q92917	Q92917	GPKOW	G patch domain and KOW motifs-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	763.058347	2286.15321	0.45526	0.00034739	0.63568	0.00048506	1.0909	0.00083245	763.393077355052	12.006	0.079802	12.006	11.97	12.05	0	525	61	0.973257487423603	0.0404125540648674	0.973257487423603	588.248137326514	0	24.4258173817866						472	10	4	NaN	NaN	NaN	0.00037212	1	35528	42.495	42.358	1	117510			21697	2444	18293	18817	21697	21697		
VVTYGMANLLTGPK	14	Unmodified	_VVTYGMANLLTGPK_			0	0	0	Q99536	Q99536	Q99536	VAT1	Synaptic vesicle membrane protein VAT-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	732.39997	1462.78539	2.1697	0.0015891	-2.0049	-0.0014684	0.16478	0.00012068	732.398116342435	13.841	0.18619	13.841	13.77	13.957	0	393	94	1.0618830335572	0.0622470429048412	1.0618830335572	429.329431200591	0	25.1670727186684						1237	22	5	NaN	NaN	NaN	0.00013948	1	17359	88.24	71.588	1	462320			21698	2647	18294	18818	21698	21698		
VVVAENFDEIVNNENK	16	Unmodified	_VVVAENFDEIVNNENK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.95488	1831.89521	2.4791	0.0022732	1.076	0.0009866	3.555	0.0032598	916.956329174221	12.325	0.46111	12.325	12.139	12.6	0	297	103	1.12600091227925	0.0679285871722863	1.12600091227925	454.392347901706	0	27.4122603971799						2109	53	6	NaN	NaN	NaN	3.5938E-70	1	28022	318.31	300.21	1	1792700			21699	904	18295	18819	21699	21699		
VVVDLSEQEEEK	12	Unmodified	_VVVDLSEQEEEK_			0	0	0	Q9NXH9	Q9NXH9	Q9NXH9	TRMT1	tRNA (guanine(26)-N(2))-dimethyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.348654	1402.68275	1.949	0.0013688	0.19891	0.0001397	2.1479	0.0015086	702.34925385968	6.8353	0.20392	6.8353	6.7998	7.0037	0	456	31	1.01965166402748	0.0201393435247932	1.01965166402748	412.420347607003	0	8.14579659907088						367	24	4	NaN	NaN	NaN	0.00042983	1	15544	87.942	75.984	1	103550			21700	3104	18296	18820	21700	21700		
VVVDPVVTEQPSTSSAAK	18	Unmodified	_VVVDPVVTEQPSTSSAAK_			0	0	0	Q8WWQ0	Q8WWQ0	Q8WWQ0	PHIP	PH-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	907.480731	1812.94691	2.557	0.0023205	0.35429	0.00032151	2.9113	0.002642	907.481048314893	7.8552	0.097539	7.8552	7.8108	7.9083	0	255	79	1.15396378101328	0.0519382153173524	1.15396378101328	465.713205599854	0	20.961067536574						500	12	4	NaN	NaN	NaN	5.7238E-07	1	27555	111.98	104.01	1	120870			21701	2392	18297	18821	21701	21701		
VVVEPPEGEEK	11	Unmodified	_VVVEPPEGEEK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.311343	1210.60813	1.9924	0.001208	-1.5464	-0.00093763	0.44597	0.00027039	606.310557493085	5.0263	0.17731	5.0263	4.911	5.0883	0	582	34	0.934820374997243	0.022280809347793	0.934820374997243	378.693552850502	0	9.0259038826847						323	21	3	NaN	NaN	NaN	0.0015755	1	9750	69.915	61.732	1	83834			21702	1776	18298	18822	21702	21702		
VVVEPVGPVGFKPETFR	17	Unmodified	_VVVEPVGPVGFKPETFR_			0	0	1	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	619.680483	1856.01962	0.63279	0.00039213	-0.18694	-0.00011584	0.44585	0.00027629	620.014888566278	12.254	0.10643	12.254	12.201	12.307	-1.7764E-15	612	58	0.914549654013882	0.0385117135892644	0.914549654013882	553.536991372608	0	23.3094594473285						425	13	4	NaN	NaN	NaN	0.00012563	1	28614	58.338	55.05	1	89191			21703	2807	18299	18823	21703	21703		
VVVHPLVLLSVVDHFNR	17	Unmodified	_VVVHPLVLLSVVDHFNR_			0	0	0	P51665	P51665	P51665	PSMD7	26S proteasome non-ATPase regulatory subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.379027	1942.11525	0.1705	0.00011055	-0.073784	-4.784E-05	0.09672	6.2711E-05	648.713163337752	16.91	0.26608	16.91	16.821	17.087	0	501	40	0.98941132619024	0.0262372893807942	0.98941132619024	598.650718847927	0	15.875068065891						730	31	5	NaN	NaN	NaN	1.0461E-06	1	30563	138	136.52	1	266560			21704	1196	18300	18824	21704	21704		
VVVLGLLPR	9	Unmodified	_VVVLGLLPR_			0	0	0	Q15102	Q15102	Q15102	PAFAH1B3	Platelet-activating factor acetylhydrolase IB subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.328945	964.643337	0.033153	1.6024E-05	-1.7608	-0.00085104	-1.7276	-0.00083502	483.328084417194	14.32	0.23053	14.32	14.187	14.418	0	687	34	0.863749705078866	0.0223923326891349	0.863749705078866	350.906722532112	0	9.09710304685495						456	27	3	NaN	NaN	NaN	0.00016157	1	3539	73.637	70.782	1	148470			21705	1812	18301	18825	21705	21705		
VVVLGTPAEEDGGGK	15	Unmodified	_VVVLGTPAEEDGGGK_			0	0	0	Q8IYS1	Q8IYS1	Q8IYS1	PM20D2	Peptidase M20 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.372463	1426.73037	1.896	0.0013545	-1.5181	-0.0010845	0.3779	0.00026996	714.371676024765	7.1191	0.15073	7.1191	7.0836	7.2343	8.8818E-16	477	40	1.0055473068722	0.0262082910405103	1.0055473068722	406.648609499184	0	10.5987704766713						352	18	4	NaN	NaN	NaN	4.5029E-08	1	16287	88.24	84.632	1	158160			21706	2226	18302	18826	21706	21706		
VVVLMGSTSDLGHCEK	16	Unmodified	_VVVLMGSTSDLGHCEK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	577.951657	1730.83314	0.6557	0.00037896	-0.20297	-0.00011731	0.45273	0.00026166	577.951737911796	8.4495	0.23941	8.4495	8.3963	8.6357	0	627	55	0.90440375274676	0.0365480561699901	0.90440375274676	547.689399520676	0	22.1327950891362						938	28	6	NaN	NaN	NaN	7.7752E-07	1	25346	128.57	120.19	1	495840			21707	802	18303	18827	21707	21707		
VVVLMGSTSDLGHCEK	16	Unmodified	_VVVLMGSTSDLGHCEK_			0	0	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.423847	1730.83314	2.556	0.0022146	-1.9723	-0.0017089	0.58365	0.00050569	866.422413195451	8.4495	0.15075	8.4495	8.3963	8.547	0	216	40	1.17988115188462	0.0258960141762798	1.17988115188462	476.344326625887	0	10.4547982781071						598	18	5	NaN	NaN	NaN	6.2876E-09	1	25347	110.58	98.563	1	279690			21708	802	18303	18827	21708	21708		
VVVLMGSTSDLGHCEK	16	Oxidation (M)	_VVVLM(Oxidation (M))GSTSDLGHCEK_	VVVLM(1)GSTSDLGHCEK	VVVLM(88)GSTSDLGHCEK	0	1	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	874.421304	1746.82806	2.5371	0.0022185	-1.0355	-0.00090547	1.5016	0.001313	874.420316347767	6.4806	0.079823	6.4806	6.4451	6.5249	0	255	31	1.15396378101328	0.0199542576953273	1.15396378101328	465.8470079019	0	8.05539254803074						231	10	4	NaN	NaN	NaN	1.7388E-06	1	25796	87.573	84.902	1	48557			21709	802	18303	18828	21709	21709	266	
VVVLMGSTSDLGHCEK	16	Oxidation (M)	_VVVLM(Oxidation (M))GSTSDLGHCEK_	VVVLM(1)GSTSDLGHCEK	VVVLM(54)GSTSDLGHCEK	0	1	0	P22234	P22234	P22234	PAICS	Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.283295	1746.82806	0.3708	0.00021628	1.2234	0.00071357	1.5942	0.00092985	583.284097400218	6.4629	0.097539	6.4629	6.4274	6.5249	0	672	40	0.873923798053065	0.026448974146953	0.873923798053065	529.192863621045	0	16.0158224319406						344	12	4	NaN	NaN	NaN	0.0015929	1	25797	54.309	46.344	1	76719			21710	802	18303	18828	21710	21710	266	
VVVPIYCTSFLAVEEDK	17	Unmodified	_VVVPIYCTSFLAVEEDK_			0	0	0	Q8IWX8	Q8IWX8	Q8IWX8	CHERP	Calcium homeostasis endoplasmic reticulum protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	985.002984	1967.99142	0.69513	0.00068471	1.3638	0.0013433	2.0589	0.002028	985.505701010098	16.714	0.17734	16.714	16.626	16.803	0	210	79	1.18386433251387	0.0517387417223738	1.18386433251387	477.494509616091	0	20.8680711365117						700	21	3	NaN	NaN	NaN	0.020679	1	31076	53.051	51.577	1	169530			21711	2206	18304	18829	21711	21711		
VVVQVLAEEPEAVLK	15	Unmodified	_VVVQVLAEEPEAVLK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	811.971813	1621.92907	2.4175	0.0019629	0.50069	0.00040655	2.9181	0.0023695	811.972485986812	14.622	0.16847	14.622	14.568	14.737	0	255	64	1.15396378101328	0.041918364642191	1.15396378101328	466.129349171901	0	16.9324032092738						1081	20	5	NaN	NaN	NaN	2.481E-12	1	22253	152.23	131.89	1	1143300			21712	1127	18305	18830	21712	21712		
VVVSGLPPSGSWQDLK	16	Unmodified	_VVVSGLPPSGSWQDLK_			0	0	0	Q07955	Q07955	Q07955	SRSF1	Serine/arginine-rich splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.951412	1667.88827	3.3871	0.0028281	-0.50684	-0.00042319	2.8803	0.0024049	834.951131833591	12.972	0.5498	12.972	12.671	13.221	0	339	70	1.09798411722691	0.0460751761907576	1.09798411722691	443.413553113558	0	18.6071522024165						1356	63	4	NaN	NaN	NaN	0.0051708	1	23583	47.361	42.532	1	737790			21713	1572	18306	18831	21713	21713		
VVVTMEHSAK	10	Unmodified	_VVVTMEHSAK_			0	0	0	P55809	P55809	P55809	OXCT1	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.792066	1099.56958	1.7819	0.00098144	-0.026085	-1.4367E-05	1.7558	0.00096707	550.791866247839	2.9513	0.13301	2.9513	2.9336	3.0666	0	609	22	0.916577990479294	0.0141963881924577	0.916577990479294	371.725907554461	0	5.75746454710014						107	16	2	NaN	NaN	NaN	0.045919	1	6705	29.31	11.914	1	21310			21714	1279	18307	18832	21714	21714		
VVVTVEQTEEELER	14	Unmodified	_VVVTVEQTEEELER_			0	0	0	O15269	O15269	O15269	SPTLC1	Serine palmitoyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.425424	1658.8363	3.2935	0.002735	-6.2843	-0.0052186	-2.9908	-0.0024836	830.42040577962	11.092	0.23056	11.092	10.995	11.225	0	351	106	1.08996939197032	0.070056540734208	1.08996939197032	440.196671126735	0	28.2931394670692						859	27	4	NaN	NaN	NaN	0.0002364	1	23291	86.243	70.363	1	256480			21715	159	18308	18833	21715	21715		
VVVVDDLLATGGTMNAACELLGR	23	Unmodified	_VVVVDDLLATGGTMNAACELLGR_			0	0	0	P07741	P07741	P07741	APRT	Adenine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	792.075015	2373.20322	0.091691	7.2626E-05	-2.0586	-0.0016306	-1.9669	-0.001558	792.407620287504	19.375	0.035459	19.375	19.357	19.392	0	549	31	0.957085760909907	0.0202286526818168	0.957085760909907	578.345655716216	0	12.2237252682544						114	5	4	NaN	NaN	NaN	4.1255E-05	1	36229	52.149	51.844	1	21606			21716	564	18309	18834	21716	21716		
VVVVDDLLATGGTMNAACELLGR	23	Unmodified	_VVVVDDLLATGGTMNAACELLGR_			0	0	0	P07741	P07741	P07741	APRT	Adenine phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1187.60888	2373.20322	0.18556	0.00022037	-0.65965	-0.00078341	-0.47409	-0.00056304	1188.11026258962	19.375	0.044438	19.375	19.357	19.401	0	66	28	1.27913350869533	0.0178079416067196	1.27913350869533	515.302570732715	0	7.17397990672634						100	6	3	NaN	NaN	NaN	0.00020161	1	36230	59.997	59.054	1	16671			21717	564	18309	18834	21717	21717		
VVVVGDQSAGK	11	Unmodified	_VVVVGDQSAGK_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	529.795663	1057.57677	1.3579	0.0007194	0.12594	6.672E-05	1.4838	0.00078612	529.795650266836	3.714	0.097593	3.714	3.6962	3.7938	0	687	31	0.863749705078866	0.0203552522347787	0.863749705078866	350.473052665255	0	8.25929936247303						166	12	3	NaN	NaN	NaN	0.012037	1	5660	47.561	33.913	1	43000			21718	255	18310	18835	21718	21718		
VVVVQAISALCQK	13	Unmodified	_VVVVQAISALCQK_			0	0	0	Q9Y678;Q9UBF2	Q9Y678;Q9UBF2	Q9Y678	COPG1;COPG2	Coatomer subunit gamma-1;Coatomer subunit gamma-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.907962	1413.80137	1.7211	0.0012184	0.5316	0.00037632	2.2527	0.0015947	707.908448979004	13.017	0.133	13.017	12.972	13.105	0	366	61	1.07994477139643	0.040134443533411	1.07994477139643	436.773670815887	0	16.2320043510874						480	16	4	NaN	NaN	NaN	2.5378E-05	1	15905	108.93	93.05	1	184010			21719	3452;3173	18311	18836	21719	21719		
VVVVVPNEEDWK	12	Unmodified	_VVVVVPNEEDWK_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.874642	1411.73473	1.2475	0.00088181	1.07	0.00075634	2.3175	0.0016381	706.875330111737	11.598	0.18629	11.598	11.456	11.642	0	459	73	1.01763759082241	0.0483611669559018	1.01763759082241	411.579942526772	0	19.5595037916709						650	22	4	NaN	NaN	NaN	0.027908	1	15819	43.168	41.912	1	187250			21720	1919	18312	18837	21720	21720		
VVWVEESDKR	10	Unmodified	_VVWVEESDKR_			0	0	1	O00571	O00571	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	416.21906	1245.63535	-0.59125	-0.00024609	0.82121	0.0003418	0.22996	9.5713E-05	416.219749560151	5.0529	0.13299	5.0529	5.0263	5.1593	0	831	25	0.76571780291124	0.0163932842397914	0.76571780291124	465.134110617641	0	9.95807548941292						157	16	3	NaN	NaN	NaN	0.050434	1	10791	20.234	4.6518	1	41651			21721	93	18313	18838	21721	21721		
VVWVEESDKR	10	Unmodified	_VVWVEESDKR_			0	0	1	O00571	O00571	O00571	DDX3X	ATP-dependent RNA helicase DDX3X	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	623.824952	1245.63535	2.6433	0.001649	-1.0037	-0.00062615	1.6396	0.0010228	623.824339964948	5.0529	0.16846	5.0529	5.0085	5.177	0	534	28	0.967195187796614	0.0181919339867516	0.967195187796614	391.684304183551	0	7.36717375691939						281	20	4	NaN	NaN	NaN	1.7148E-06	1	10792	83.623	62.348	1	88864			21722	93	18313	18838	21722	21722		
VVYENAYGQFIGPHR	15	Unmodified	_VVYENAYGQFIGPHR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	583.961761	1748.86345	0.58123	0.00033941	-1.2904	-0.00075355	-0.70918	-0.00041413	583.96112797202	9.6736	0.1685	9.6736	9.6115	9.78	0	672	88	0.873923798053065	0.0590261859539438	0.873923798053065	529.188030173649	0	35.7421907301515						998	20	5	NaN	NaN	NaN	6.9894E-05	1	25852	124.46	94.388	1	463860			21723	1914	18314	18839	21723	21723		
VVYENAYGQFIGPHR	15	Unmodified	_VVYENAYGQFIGPHR_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	875.439003	1748.86345	2.8231	0.0024714	-1.1713	-0.0010254	1.6518	0.0014461	875.437757005452	9.6647	0.15075	9.6647	9.6115	9.7622	0	291	40	1.12999890578964	0.0259815997142345	1.12999890578964	456.168377630609	0	10.4884917402713						545	18	5	NaN	NaN	NaN	1.5599E-08	1	25854	147.72	122.98	1	211450			21724	1914	18314	18839	21724	21724		
VVYFGDSMHSDIFPAR	16	Unmodified	_VVYFGDSMHSDIFPAR_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.937979	1839.8614	2.7483	0.002531	0.2676	0.00024645	3.0159	0.0027775	921.439686433183	12.928	0.10642	12.928	12.875	12.981	0	216	46	1.17988115188462	0.0298677085793482	1.17988115188462	476.119975097803	0	12.0525805860302						284	13	4	NaN	NaN	NaN	0.00018434	1	28216	68.108	37.067	1	48534			21725	2001	18315	18840	21725	21725		
VVYGDTDSVMCR	12	Unmodified	_VVYGDTDSVMCR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	701.310494	1400.60644	1.5779	0.0011066	1.5675	0.0010993	3.1454	0.0022059	701.311208647528	6.9417	0.10635	6.9417	6.8974	7.0037	0	495	37	0.993446994398923	0.0242140133018964	0.993446994398923	401.827107384068	0	9.7940272386121						231	13	4	NaN	NaN	NaN	0.010646	1	15458	49.16	42.469	1	60608			21726	878	18316	18841	21726	21726		
VVYGGGAAEISCALAVSQEADK	22	Unmodified	_VVYGGGAAEISCALAVSQEADK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.03608	2194.0576	1.5746	0.001729	0.22426	0.00024624	1.7988	0.0019752	1098.53795214241	13.948	0.27486	13.948	13.903	14.178	0	138	58	1.23157729878518	0.0377235597293333	1.23157729878518	496.380246856656	0	15.2042668448247						1025	32	4	NaN	NaN	NaN	6.2582E-24	1	34610	164.28	150.28	1	400880			21727	1113	18317	18842	21727	21727		
VVYGGGAAEISCALAVSQEADK	22	Unmodified	_VVYGGGAAEISCALAVSQEADK_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.359809	2194.0576	0.73814	0.00054058	1.5481	0.0011337	2.2862	0.0016743	732.695597311668	13.948	0.11527	13.948	13.903	14.019	0	495	31	0.993446994398923	0.0201727650206149	0.993446994398923	600.603027803154	0	12.1957425195831						268	14	4	NaN	NaN	NaN	0.00071604	1	34611	97.949	95.848	1	55658			21728	1113	18317	18842	21728	21728		
VVYIFGPPVK	10	Unmodified	_VVYIFGPPVK_			0	0	0	P49915	P49915	P49915	GMPS	GMP synthase [glutamine-hydrolyzing]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	559.83406	1117.65357	1.2789	0.000716	-1.601	-0.0008963	-0.32206	-0.0001803	559.833042381316	12.804	0.15965	12.804	12.733	12.893	0	612	73	0.914549654013882	0.048690231972321	0.914549654013882	370.829017350887	0	19.7427780959048						810	19	3	NaN	NaN	NaN	0.036889	1	7211	26.456	13.861	1	351310			21729	1155	18318	18843	21729	21729		
VVYSAFLMATPR	12	Unmodified	_VVYSAFLMATPR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.863023	1353.71149	1.3886	0.00094126	2.0402	0.001383	3.4288	0.0023242	677.864614226678	13.948	0.1064	13.948	13.903	14.01	0	393	25	1.0618830335572	0.0160648436588446	1.0618830335572	429.653385164203	0	6.50007038631571						176	13	3	NaN	NaN	NaN	0.0024249	1	14016	65.933	56.418	1	38165			21730	1796	18319	18844	21730	21730		
VWAEPCLIDAAK	12	Unmodified	_VWAEPCLIDAAK_			0	0	0	Q9H4A4	Q9H4A4	Q9H4A4	RNPEP	Aminopeptidase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.850113	1371.68567	1.1785	0.00080944	2.7118	0.0018626	3.8903	0.0026721	687.353836386388	12.174	0.25721	12.174	12.077	12.334	0	477	73	1.0055473068722	0.0483879041747655	1.0055473068722	406.80523428675	0	19.5758593951085						1064	30	4	NaN	NaN	NaN	5.4151E-05	1	14534	64.064	42.976	1	388090			21731	2892	18320	18845	21731	21731		
VWAHYEEQPVEEVMPVLEEK	20	Unmodified	_VWAHYEEQPVEEVMPVLEEK_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.394631	2440.16206	1.7624	0.0014353	-1.4785	-0.0012041	0.28388	0.00023119	814.728145704987	14.249	0.24825	14.249	14.143	14.391	0	525	163	0.973257487423603	0.108903186741935	0.973257487423603	588.023959116883	0	65.7972672760603						2864	29	6	NaN	NaN	NaN	1.8905E-07	1	36529	129.53	119.62	1	793440			21732	2108	18321	18846	21732	21732		
VWDAVSGDELMTLAHK	16	Unmodified	_VWDAVSGDELMTLAHK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	591.2943	1770.86107	0.3061	0.000181	-0.9129	-0.00053979	-0.6068	-0.0003588	591.293705939684	13.744	0.15072	13.744	13.682	13.832	0	639	70	0.896281965493857	0.046729464203025	0.896281965493857	542.673628464105	0	28.2933818502822						886	18	5	NaN	NaN	NaN	6.4208E-09	1	26442	162.23	135.76	1	385250			21733	3394	18322	18847	21733	21733		
VWDAVSGDELMTLAHK	16	Unmodified	_VWDAVSGDELMTLAHK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.437812	1770.86107	2.0349	0.0018038	-0.16879	-0.00014963	1.8661	0.0016542	886.437741473369	13.744	0.14184	13.744	13.691	13.832	0	183	49	1.20177511391933	0.0318304689315978	1.20177511391933	485.096255644845	0	12.8483616570997						550	17	5	NaN	NaN	NaN	1.9758E-06	1	26443	95.656	89.628	1	258180			21734	3394	18322	18847	21734	21734		
VWDAVSGDELMTLAHK	16	Oxidation (M)	_VWDAVSGDELM(Oxidation (M))TLAHK_	VWDAVSGDELM(1)TLAHK	VWDAVSGDELM(44)TLAHK	0	1	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.625938	1786.85598	-0.054833	-3.2715E-05	0.42756	0.00025509	0.37272	0.00022238	596.62609462691	11.802	0.088685	11.802	11.766	11.855	0	612	46	0.914549654013882	0.0304208382695857	0.914549654013882	553.6957301447	0	18.4176858887494						136	11	2	NaN	NaN	NaN	0.00079705	1	26891	43.613	40.528	1	56016			21735	3394	18322	18848	21735	21735	649	
VWDIAYLQEIEDPEEPDPK	19	Unmodified	_VWDIAYLQEIEDPEEPDPK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1143.54426	2285.07396	0.42039	0.00048073	-0.79367	-0.00090759	-0.37328	-0.00042686	1144.54593778181	17.566	0.11526	17.566	17.495	17.61	0	96	76	1.2593374219024	0.0495207586403379	1.2593374219024	507.441585888004	0	19.9540582704748						809	14	5	NaN	NaN	NaN	6.6876E-07	1	35521	77.431	76.335	1	125680			21736	3308	18323	18849	21736	21736		
VWDISGLR	8	Unmodified	_VWDISGLR_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	473.261259	944.507966	-1.1128	-0.00052666	-0.23606	-0.00011172	-1.3489	-0.00063838	473.261336481557	11.562	0.16856	11.562	11.518	11.687	0	723	34	0.839303037468863	0.022429693259391	0.839303037468863	341.077146080103	0	9.11501022019002						196	20	2	NaN	NaN	NaN	0.0024533	1	3145	81.32	56.47	1	53384			21737	1241	18324	18850	21737	21737		
VWDLFPEADK	10	Unmodified	_VWDLFPEADK_			0	0	0	Q99613;B5ME19	Q99613	Q99613	EIF3C;EIF3CL	Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.303321	1218.59209	0.088514	5.402E-05	-0.19495	-0.00011898	-0.10644	-6.4959E-05	610.303300425671	14.923	0.28379	14.923	14.755	15.038	0	630	88	0.902373728295776	0.0587973638845102	0.902373728295776	365.52249060146	0	23.8169155572114						1487	33	3	NaN	NaN	NaN	0.0010043	1	9974	83.358	59.783	1	399250			21738	21	18325	18851	21738	21738		
VWDVESGSLK	10	Unmodified	_VWDVESGSLK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.287671	1118.56079	0.73155	0.00040988	5.3742	0.0030111	6.1057	0.003421	560.291799598547	8.7778	0.29296	8.7778	8.6446	8.9375	0	639	61	0.896281965493857	0.0406089550100428	0.896281965493857	363.418264679924	0	16.4658405818565						597	29	3	NaN	NaN	NaN	0.00051154	1	7228	65.404	16.079	1	243150			21739	2823	18326	18852	21739	21739		
VWELGGCANK	10	Unmodified	_VWELGGCANK_			0	0	0	P08240	P08240	P08240	SRPR	Signal recognition particle receptor subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.274041	1132.53353	1.0704	0.00060718	3.079	0.0017466	4.1494	0.0023538	567.275372502834	7.4294	0.1862	7.4294	7.3674	7.5536	0	621	37	0.908462957275599	0.0243518545960122	0.908462957275599	368.302013835746	0	9.87254022469261						361	22	4	NaN	NaN	NaN	0.0034335	1	7594	67.464	36.902	1	103200			21740	580	18327	18853	21740	21740		
VWEVCFGK	8	Unmodified	_VWEVCFGK_			0	0	0	Q9Y4P3	Q9Y4P3	Q9Y4P3	TBL2	Transducin beta-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.74967	1023.48479	-0.46258	-0.00023719	-0.4256	-0.00021822	-0.88818	-0.00045541	512.74920936252	11.146	0.14187	11.146	11.092	11.234	0	717	34	0.84338031290707	0.0224203443559257	0.84338031290707	342.35449859868	0	9.10112037584213						244	17	3	NaN	NaN	NaN	0.010951	1	4824	46.835	31.337	1	56939			21741	3413	18328	18854	21741	21741		
VWGNVGTVEWADPIEDPDPEVMAK	24	Unmodified	_VWGNVGTVEWADPIEDPDPEVMAK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1327.62579	2653.23702	0.25633	0.00034031	0.77002	0.0010223	1.0263	0.0013626	1328.63004788975	17.371	0.070955	17.371	17.335	17.406	0	69	28	1.27715511956461	0.0178079416067196	1.27715511956461	514.189216390136	0	7.16956883311241						131	9	3	NaN	NaN	NaN	0.050493	1	37454	17.88	16.629	1	22356			21742	263	18329	18855	21742	21742		
VWGVPIPVFHHK	12	Unmodified	_VWGVPIPVFHHK_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.603068	1414.78738	-0.86938	-0.00041087	-0.86788	-0.00041016	-1.7373	-0.00082104	472.602845515691	12.298	0.21285	12.298	12.165	12.378	0	720	25	0.841341816837976	0.0163091029338942	0.841341816837976	510.402415797906	0	9.89396386862273						418	25	4	NaN	NaN	NaN	0.0017233	1	15941	84.368	73.581	1	132840			21743	3037	18330	18856	21743	21743		
VWILTDDSDIYK	12	Unmodified	_VWILTDDSDIYK_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.371932	1466.72931	0.84121	0.00061776	1.506	0.001106	2.3472	0.0017237	734.373364867595	14.71	0.11529	14.71	14.666	14.781	0	423	31	1.04178812298108	0.0201087800634321	1.04178812298108	421.194241117693	0	8.12996632595872						276	14	3	NaN	NaN	NaN	0.00049282	1	17481	65.933	44.844	1	84427			21744	2200	18331	18857	21744	21744		
VWINTSDIILVGLR	14	Unmodified	_VWINTSDIILVGLR_			0	0	0	P47813;O14602	P47813	P47813	EIF1AX;EIF1AY	Eukaryotic translation initiation factor 1A, X-chromosomal;Eukaryotic translation initiation factor 1A, Y-chromosomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.966865	1597.91918	1.2729	0.0010183	-0.091933	-7.3544E-05	1.181	0.00094475	799.966579981732	18.763	0.088698	18.763	18.736	18.825	0	345	37	1.09397730668811	0.0240474923010432	1.09397730668811	441.954783315491	0	9.7149220410825						221	11	4	NaN	NaN	NaN	0.00026073	1	21521	84.309	78.282	1	49388			21745	107	18332	18858	21745	21745		
VWLDPNETNEIANANSR	17	Unmodified	_VWLDPNETNEIANANSR_			0	0	0	P84098	P84098	P84098	RPL19	60S ribosomal protein L19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.96631	1941.91807	2.9564	0.0028735	-1.224	-0.0011897	1.7324	0.0016838	972.466795769668	11.438	0.35483	11.438	11.314	11.669	-1.7764E-15	255	127	1.15396378101328	0.0837850071310544	1.15396378101328	465.478325567481	0	33.7966455002404						2398	41	6	NaN	NaN	NaN	5.5298E-19	1	30548	169.52	142.14	1	1731000			21746	1485	18333	18859	21746	21746		
VWLEVEPVGMLK	12	Unmodified	_VWLEVEPVGMLK_			0	0	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.386331	1398.75811	0.99252	0.00069515	0.89792	0.00062889	1.8904	0.001324	700.386956898214	16.191	0.14187	16.191	16.138	16.28	0	447	55	1.02569221487577	0.0362508280266105	1.02569221487577	414.874940690336	0	14.6628393092923						387	17	2	NaN	NaN	NaN	0.00066478	1	15421	55.235	42.06	1	212370			21747	1061	18334	18860	21747	21747		
VWLEVEPVGMLK	12	Oxidation (M)	_VWLEVEPVGM(Oxidation (M))LK_	VWLEVEPVGM(1)LK	VWLEVEPVGM(55)LK	0	1	0	P43121	P43121	P43121	MCAM	Cell surface glycoprotein MUC18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.383788	1414.75302	1.4123	0.0010004	-3.4992	-0.0024787	-2.0869	-0.0014783	708.881428190267	14.223	0.13301	14.223	14.152	14.285	0	441	46	1.02971785871157	0.0301985912511542	1.02971785871157	416.457163191474	0	12.2134617152031						226	16	2	NaN	NaN	NaN	0.018712	1	15936	55.235	39.356	1	62933			21748	1061	18334	18861	21748	21748	377	
VWLIDDILEK	10	Unmodified	_VWLIDDILEK_			0	0	0	Q9Y606	Q9Y606	Q9Y606	PUS1	tRNA pseudouridine synthase A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.350271	1242.68599	0.16099	0.00010019	-1.1265	-0.0007011	-0.96554	-0.0006009	622.349475780118	18.701	0.097524	18.701	18.674	18.772	0	555	34	0.953040030838688	0.0222530586923161	0.953040030838688	385.961942811311	0	9.01203883201225						221	12	3	NaN	NaN	NaN	0.0027807	1	10715	55.235	38.777	1	67138			21749	3447	18335	18862	21749	21749		
VWLWTACDFADGER	14	Unmodified	_VWLWTACDFADGER_			0	0	0	P49792	P49792	P49792	RANBP2	E3 SUMO-protein ligase RanBP2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.388122	1724.76169	1.6116	0.0013914	0.31366	0.00027081	1.9252	0.0016622	863.388682162458	16.431	0.079817	16.431	16.395	16.475	0	342	31	1.09598084995137	0.0200340549752125	1.09598084995137	442.484271160668	0	8.08842071874983						196	10	4	NaN	NaN	NaN	4.7587E-05	1	25181	66.953	60.926	1	38153			21750	1151	18336	18863	21750	21750		
VWLYHDGR	8	Unmodified	_VWLYHDGR_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	523.264333	1044.51411	0.98793	0.00051695	3.0691	0.001606	4.0571	0.0021229	523.767983074285	5.8332	0.21279	5.8332	5.7445	5.9573	0	642	40	0.894250814548268	0.0264122944165538	0.894250814548268	362.907419846513	0	10.7187127626827						407	25	4	NaN	NaN	NaN	0.0066182	1	5334	65.313	41.737	1	115450			21751	1163	18337	18864	21751	21751		
VWNLANCK	8	Unmodified	_VWNLANCK_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	502.752744	1003.49094	0.024543	1.2339E-05	1.8331	0.0009216	1.8576	0.00093394	502.753086291111	6.9683	0.33702	6.9683	6.8087	7.1457	0	732	85	0.833184998970724	0.0570581200657645	0.833184998970724	338.305292331581	0	23.1678006836236						984	39	4	NaN	NaN	NaN	2.7569E-05	1	4368	105.22	74.656	1	361100			21752	1435	18338	18865	21752	21752		
VWNTLSIK	8	Unmodified	_VWNTLSIK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.779285	959.544017	-0.75136	-0.00036124	0.50483	0.00024271	-0.24653	-0.00011853	480.779508288053	9.5938	0.133	9.5938	9.5494	9.6824	0	738	25	0.829104889055312	0.0163295196874556	0.829104889055312	336.85707114803	0	6.63452145534677						189	16	3	NaN	NaN	NaN	0.026266	1	3442	56.014	34.086	1	61588			21753	2355	18339	18866	21753	21753		
VWQLGSSSPNFTLEGHEK	18	Unmodified	_VWQLGSSSPNFTLEGHEK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.665561	2014.97485	0.4657	0.00031326	0.5448	0.00036647	1.0105	0.00067973	673.000105122501	11.749	0.1064	11.749	11.704	11.811	0	567	73	0.944945209309785	0.0486295401630769	0.944945209309785	571.599604924227	0	29.4161245234155						508	13	3	NaN	NaN	NaN	7.6453E-07	1	31890	84.58	70.802	1	162530			21754	973	18340	18867	21754	21754		
VWQLGSSSPNFTLEGHEK	18	Unmodified	_VWQLGSSSPNFTLEGHEK_			0	0	0	P35606	P35606	P35606	COPB2	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.4947	2014.97485	0.85188	0.00085911	0.59807	0.00060315	1.4499	0.0014623	1008.99659158651	11.749	0.097532	11.749	11.713	11.811	0	129	40	1.23753038177212	0.0257896256378105	1.23753038177212	499.05842048109	0	10.4001728161002						352	12	4	NaN	NaN	NaN	5.8764E-14	1	31891	139.7	120.14	1	73311			21755	973	18340	18867	21755	21755		
VWVQAFK	7	Unmodified	_VWVQAFK_			0	0	0	P11279	P11279	P11279	LAMP1	Lysosome-associated membrane glycoprotein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	439.250163	876.485774	-2.4888	-0.0010932	-2.1901	-0.00096201	-4.6789	-0.0020552	439.24906104503	9.106	0.15076	9.106	9.044	9.1947	0	825	28	0.769815552739974	0.0184385915537137	0.769815552739974	313.186691182008	0	7.50143519211895						198	18	3	NaN	NaN	NaN	0.019064	1	1963	49.406	37.757	1	49473			21756	649	18341	18868	21756	21756		
VWYVSNIDGTHIAK	14	Unmodified	_VWYVSNIDGTHIAK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.94734	1601.82019	0.71004	0.00037984	0.97297	0.00052049	1.683	0.00090032	534.947928961374	10.197	0.31033	10.197	10.117	10.427	0	669	109	0.875957769340875	0.0731570602990438	0.875957769340875	530.801963960015	0	44.3308029718067						1312	36	5	NaN	NaN	NaN	8.9177E-06	1	21651	112.93	91.837	1	1429100			21757	546	18342	18869	21757	21757		
VWYVSNIDGTHIAK	14	Unmodified	_VWYVSNIDGTHIAK_			0	0	0	P06744	P06744	P06744	GPI	Glucose-6-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	801.917372	1601.82019	2.652	0.0021267	-0.519	-0.00041619	2.133	0.0017105	801.917092962496	10.197	0.17736	10.197	10.143	10.321	0	333	79	1.10198982404297	0.0521101122719825	1.10198982404297	445.182436947378	0	21.0514709525468						789	21	5	NaN	NaN	NaN	2.0432E-08	1	21653	157.74	146.38	1	501920			21758	546	18342	18869	21758	21758		
VYAAATEDMDCLTFGSPVLMR	21	Unmodified	_VYAAATEDMDCLTFGSPVLMR_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1174.04199	2346.06942	0.0334	3.9212E-05	1.4663	0.0017215	1.4997	0.0017607	1174.54621856948	16.892	0.21285	16.892	16.812	17.025	0	63	43	1.28111162701928	0.027703142560725	1.28111162701928	516.134212969056	0	11.1610412245007						451	25	4	NaN	NaN	NaN	9.6814E-18	1	36009	120.75	118.64	1	87367			21759	1013	18343	18870	21759	21759		
VYAAATEDMDCLTFGSPVLMR	21	Oxidation (M)	_VYAAATEDMDCLTFGSPVLM(Oxidation (M))R_	VYAAATEDMDCLTFGSPVLM(1)R	VYAAATEDM(-59)DCLTFGSPVLM(59)R	0	1	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1182.03945	2362.06434	1.0012	0.0011835	-0.010329	-1.221E-05	0.99088	0.0011713	1182.04043140443	15.517	0.079817	15.517	15.482	15.562	0	63	25	1.28111162701928	0.0158260309307916	1.28111162701928	516.113631893006	0	6.37573661020167						133	10	4	NaN	NaN	NaN	3.0374E-05	1	36145	69.327	68.962	2	17490			21760	1013	18343	18871	21760	21760	367	
VYADGIFDLFHSGHAR	16	Unmodified	_VYADGIFDLFHSGHAR_			0	0	0	P49585;Q9Y5K3	P49585	P49585	PCYT1A;PCYT1B	Choline-phosphate cytidylyltransferase A;Choline-phosphate cytidylyltransferase B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.297032	1803.86927	0.35841	0.00021587	0.35151	0.00021172	0.70992	0.00042758	602.297157132274	14.373	0.097525	14.373	14.338	14.435	0	594	40	0.926715457081489	0.0263464629071559	0.926715457081489	561.020566528405	0	15.949779873902						252	12	3	NaN	NaN	NaN	0.0028887	1	27323	61.194	57.211	1	71736			21761	1135	18344	18872	21761	21761		
VYAEVNSLR	9	Unmodified	_VYAEVNSLR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.782556	1049.55056	0.93313	0.00049062	-1.1184	-0.00058805	-0.18529	-9.7423E-05	525.78193974639	6.055	0.11527	6.055	6.0195	6.1347	0	669	25	0.875957769340875	0.0162706422840635	0.875957769340875	355.461509470775	0	6.60258664148176						133	14	2	NaN	NaN	NaN	0.072819	1	5460	24.121	16.475	1	38099			21762	772	18345	18873	21762	21762		
VYALPEDLVEVK	12	Unmodified	_VYALPEDLVEVK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.879393	1373.74423	1.43	0.00098364	0.97151	0.00066828	2.4015	0.0016519	687.879795070447	14.036	0.31034	14.036	13.948	14.258	0	435	46	1.03374239103424	0.0301777503680323	1.03374239103424	418.205620166183	0	12.2085588414892						983	36	4	NaN	NaN	NaN	0.0029937	1	14637	85.622	67.115	1	406510			21763	683	18346	18874	21763	21763		
VYALPEDLVEVKPK	14	Unmodified	_VYALPEDLVEVKPK_			0	0	1	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.971263	1598.89196	-0.70026	-0.00037392	-0.3714	-0.00019832	-1.0717	-0.00057223	534.305472942127	12.05	0.19512	12.05	11.988	12.183	0	705	46	0.851531465363931	0.0305604601468165	0.851531465363931	516.008513858259	0	18.518937073504						462	23	3	NaN	NaN	NaN	0.0031597	1	21554	67.548	33.355	1	111330			21764	683	18347	18875	21764	21764		
VYASSGDGEVYVWDVNSR	18	Unmodified	_VYASSGDGEVYVWDVNSR_			0	0	0	Q9Y5J1	Q9Y5J1	Q9Y5J1	UTP18	U3 small nucleolar RNA-associated protein 18 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1001.96069	2001.90683	1.5754	0.0015785	7.9619	0.0079775	9.5373	0.009556	1001.96719105366	12.13	0.17737	12.13	12.059	12.236	0	234	79	1.16792504164217	0.051781389209637	1.16792504164217	471.009713145205	0	20.8827933371462						792	21	4	NaN	NaN	NaN	5.6092E-14	1	31662	135.13	112.74	1	168420			21765	3431	18348	18876	21765	21765		
VYATILNAGTNTDGFK	16	Unmodified	_VYATILNAGTNTDGFK_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.930677	1683.8468	1.7407	0.0014673	0.57156	0.00048178	2.3122	0.0019491	843.432247370302	11.802	0.16848	11.802	11.749	11.917	0	234	121	1.16792504164217	0.0798940433128434	1.16792504164217	471.621891322705	0	32.2621559339469						830	20	5	NaN	NaN	NaN	1.6162E-12	1	24015	156.73	145.37	1	280500			21766	1127	18349	18877	21766	21766		
VYDEEVEEPVLK	12	Unmodified	_VYDEEVEEPVLK_			0	0	0	Q641Q2;Q9Y4E1	Q641Q2	Q641Q2	FAM21A;FAM21C	WASH complex subunit FAM21A;WASH complex subunit FAM21C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.861397	1447.70824	1.6109	0.0011677	1.3725	0.00099487	2.9834	0.0021626	724.861135177686	8.8931	0.15089	8.8931	8.831	8.9819	0	450	52	1.02367897599655	0.0342250726954365	1.02367897599655	413.923538525348	0	13.8388728581548						394	18	4	NaN	NaN	NaN	0.06914	1	16916	31.425	9.3812	1	97405			21767	2016	18350	18878	21767	21767		
VYDQMPEPR	9	Unmodified	_VYDQMPEPR_			0	0	0	O75251	O75251	O75251	NDUFS7	NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.766049	1133.51754	1.4328	0.0008135	0.4306	0.00024448	1.8634	0.001058	567.766519114844	5.6026	0.2306	5.6026	5.4873	5.7179	0	666	43	0.877991458330206	0.0284578263810398	0.877991458330206	355.944789860356	0	11.5370314084219						517	27	3	NaN	NaN	NaN	0.011783	1	7618	34.781	26.598	1	104180			21768	315	18351	18879	21768	21768		
VYEAVELLK	9	Unmodified	_VYEAVELLK_			0	0	0	Q8TEQ6	Q8TEQ6	Q8TEQ6	GEMIN5	Gem-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	532.305332	1062.59611	0.40591	0.00021607	-1.0236	-0.00054487	-0.6177	-0.0003288	532.30570941745	11.225	0.15073	11.225	11.163	11.314	0	633	49	0.900343422309015	0.032491664365396	0.900343422309015	365.299056451189	0	13.1829411323607						384	18	3	NaN	NaN	NaN	0.010551	1	5801	37.722	35.124	1	97658			21769	2355	18352	18880	21769	21769		
VYEDWDCFK	9	Unmodified	_VYEDWDCFK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	631.263339	1260.51212	1.2503	0.00078928	1.9268	0.0012163	3.1771	0.0020056	631.264539025889	10.684	0.097544	10.684	10.649	10.746	0	534	31	0.967195187796614	0.0202146590130609	0.967195187796614	391.633612190208	0	8.18525570470803						220	12	3	NaN	NaN	NaN	0.0069061	1	11217	49.96	37.133	1	55666			21770	2735	18353	18881	21770	21770		
VYEEVLSVTPNDGFAK	16	Unmodified	_VYEEVLSVTPNDGFAK_			0	0	0	Q12797	Q12797	Q12797	ASPH	Aspartyl/asparaginyl beta-hydroxylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.443617	1766.87268	2.3678	0.0020941	0.91816	0.00081206	3.2859	0.0029062	884.445071662446	12.449	0.14185	12.449	12.369	12.511	0	288	55	1.13199748998575	0.0359720544761399	1.13199748998575	456.938542451936	0	14.5203662435115						593	17	4	NaN	NaN	NaN	0.015316	1	26316	43.613	30.395	1	203540			21771	1596	18354	18882	21771	21771		
VYEGERPLTK	10	Unmodified	_VYEGERPLTK_			0	0	1	P11021	P11021	P11021	HSPA5	78 kDa glucose-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	397.883789	1190.62954	-0.61478	-0.00024461	1.61	0.00064058	0.99519	0.00039597	397.884371177026	3.1286	0.38141	3.1286	3.0843	3.4657	0	828	37	0.767766820543916	0.0245865031477591	0.767766820543916	466.614510066272	0	14.9425825830908						749	44	4	NaN	NaN	NaN	0.040126	1	9184	44.82	31.993	1	349270			21772	638	18355	18883	21772	21772		
VYEIPGLEPITFAGK	15	Unmodified	_VYEIPGLEPITFAGK_			0	0	0	Q9BZE1	Q9BZE1	Q9BZE1	MRPL37	39S ribosomal protein L37, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.445431	1632.87631	0.99993	0.00081739	-0.040813	-3.3362E-05	0.95912	0.00078403	817.946984060964	16.723	0.23054	16.723	16.608	16.839	0	357	67	1.08596037261705	0.0441174739341266	1.08596037261705	438.635312862861	0	17.8196944103768						835	27	4	NaN	NaN	NaN	0.0048975	1	22578	34.779	15.456	1	231860			21773	2807	18356	18884	21773	21773		
VYEIQDIYENSWTK	14	Unmodified	_VYEIQDIYENSWTK_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	894.427967	1786.84138	2.4015	0.002148	4.4144	0.0039483	6.8158	0.0060963	894.433144568506	14.338	0.19504	14.338	14.285	14.48	0	285	124	1.13399579921816	0.0820662777784023	1.13399579921816	457.70532966254	0	33.1237318080355						694	23	4	NaN	NaN	NaN	3.8389E-05	1	26890	110.58	97.407	1	348670			21774	3329	18357	18885	21774	21774		
VYENVGLMQQQK	12	Unmodified	_VYENVGLMQQQK_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.863751	1435.71295	2.0616	0.001482	-3.1851	-0.0022896	-1.1235	-0.00080763	718.861748273422	7.1989	0.10639	7.1989	7.1457	7.2521	0	465	52	1.01360860968299	0.0342345274153426	1.01360860968299	409.884024364074	0	13.843791119327						183	13	2	NaN	NaN	NaN	0.00055867	1	16562	87.942	30.91	1	109390			21775	1556	18358	18886	21775	21775		
VYENYPTYDLTER	13	Unmodified	_VYENYPTYDLTER_			0	0	0	P35659	P35659	P35659	DEK	Protein DEK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	831.885935	1661.75732	3.1377	0.0026102	-0.32009	-0.00026628	2.8176	0.0023439	831.885685293699	9.7356	0.27488	9.7356	9.647	9.9218	0	378	70	1.07192009927972	0.0461259947447743	1.07192009927972	432.900931856829	0	18.6282411545912						1009	32	5	NaN	NaN	NaN	0.055976	1	23385	27.378	24.484	1	320570			21776	979	18359	18887	21776	21776		
VYFHTDAAQAVGK	13	Unmodified	_VYFHTDAAQAVGK_			0	0	0	Q9Y697	Q9Y697	Q9Y697	NFS1	Cysteine desulfurase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.856783	1405.69901	2.4882	0.0017513	-1.619	-0.0011395	0.86921	0.0006118	703.855651974759	6.0727	0.088674	6.0727	6.0372	6.1259	0	450	49	1.02367897599655	0.0322051603576423	1.02367897599655	414.040615709631	0	13.0258066602617						325	11	3	NaN	NaN	NaN	0.00035381	1	15639	69.276	55.477	1	80668			21777	3455	18360	18888	21777	21777		
VYFLPITPHYVTQVIR	16	Unmodified	_VYFLPITPHYVTQVIR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.368128	1945.08255	0.13628	8.8499E-05	-1.4862	-0.00096512	-1.35	-0.00087662	649.70152707461	16.023	0.16846	16.023	15.934	16.103	0	675	121	0.871889544407995	0.0812067645341159	0.871889544407995	527.537587494448	0	49.1342291294993						1365	20	4	NaN	NaN	NaN	1.4671E-06	1	30632	84.999	79.905	1	350940			21778	867	18361	18889	21778	21778		
VYFLPITPHYVTQVIR	16	Unmodified	_VYFLPITPHYVTQVIR_			0	0	0	P27708	P27708	P27708	CAD	CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	973.548554	1945.08255	1.5444	0.0015036	0.93573	0.00091098	2.4802	0.0024146	974.050683074809	16.023	0.15071	16.023	15.934	16.085	0	174	34	1.20774045859593	0.02187293336483	1.20774045859593	487.164776926379	0	8.82285811290194						403	18	4	NaN	NaN	NaN	0.00029575	1	30633	56.938	56.319	1	89656			21779	867	18361	18889	21779	21779		
VYFPEQIHDVVR	12	Unmodified	_VYFPEQIHDVVR_			0	0	0	Q6PIU2	Q6PIU2	Q6PIU2	NCEH1	Neutral cholesterol ester hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	501.264781	1500.77251	-0.918	-0.00046016	-1.764	-0.00088425	-2.682	-0.0013444	501.598366163812	10.791	0.11529	10.791	10.755	10.871	0	744	61	0.82502364452135	0.0408522138458026	0.82502364452135	500.225632838116	0	24.7693804408606						318	14	3	NaN	NaN	NaN	0.049493	1	18551	14.455	9.3044	1	66454			21780	2076	18362	18890	21780	21780		
VYFQSPPGAAGEGPGGADDEGPVR	24	Unmodified	_VYFQSPPGAAGEGPGGADDEGPVR_			0	0	0	Q96C90	Q96C90	Q96C90	PPP1R14B	Protein phosphatase 1 regulatory subunit 14B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.53783	2329.0611	2.0172	0.0023511	-0.9156	-0.0010672	1.1016	0.001284	1166.03927666276	9.7179	0.079812	9.7179	9.6647	9.7445	0	135	40	1.23356193185193	0.025800234960712	1.23356193185193	496.998775131495	0	10.3948450762647						179	10	3	NaN	NaN	NaN	4.2415E-13	1	35888	75.006	71.565	1	29534			21781	2492	18363	18891	21781	21781		
VYGGLTTK	8	Unmodified	_VYGGLTTK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	419.737086	837.459619	0.20279	8.5119E-05	-1.2549	-0.00052672	-1.0521	-0.0004416	419.736907780717	3.8381	0.22165	3.8381	3.8026	4.0243	0	813	28	0.778007628350577	0.0184257549517962	0.778007628350577	316.746773443997	0	7.5015953784727						185	26	2	NaN	NaN	NaN	0.068587	1	1399	42.835	31.186	1	50749			21782	2370	18364	18892	21782	21782		
VYIASSSGSTAIK	13	Unmodified	_VYIASSSGSTAIK_			0	0	0	O75368	O75368	O75368	SH3BGRL	SH3 domain-binding glutamic acid-rich-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.345717	1282.67688	1.9845	0.0012747	-1.7866	-0.0011476	0.19787	0.0001271	642.344648760021	5.5671	0.12412	5.5671	5.5139	5.6381	0	522	28	0.975277694896658	0.0181818689972096	0.975277694896658	394.832416877768	0	7.36076639206226						171	15	3	NaN	NaN	NaN	0.00046161	1	11848	43.168	38.966	1	48796			21783	325	18365	18893	21783	21783		
VYIGSFWSHPLLIPDNR	17	Unmodified	_VYIGSFWSHPLLIPDNR_			0	0	0	Q9H4M9;Q9NZN3	Q9H4M9	Q9H4M9	EHD1;EHD3	EH domain-containing protein 1;EH domain-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	672.02302	2013.04723	-0.63451	-0.0004264	-1.4227	-0.00095609	-2.0572	-0.0013825	672.356482990791	16.901	0.10646	16.901	16.847	16.954	0	615	82	0.912521036363781	0.0547803180218731	0.912521036363781	551.989766048659	0	33.1369620249612						595	13	4	NaN	NaN	NaN	0.0012794	1	31857	59.67	58.576	1	141900			21784	2897	18366	18894	21784	21784		
VYINYYDMNAANVGWNNSTFA	21	Unmodified	_VYINYYDMNAANVGWNNSTFA_			0	0	0	P14174	P14174	P14174	MIF	Macrophage migration inhibitory factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1214.03915	2426.06375	0.051554	6.2589E-05	1.0229	0.0012418	1.0744	0.0013044	1214.54224411021	18.16	0.12414	18.16	18.124	18.248	0	63	43	1.28111162701928	0.0276993500963147	1.28111162701928	516.033967072475	0	11.1573458659395						356	15	4	NaN	NaN	NaN	4.323E-11	1	36470	123.24	121.4	1	65588			21785	692	18367	18895	21785	21785		
VYIVHGVQEDLR	12	Unmodified	_VYIVHGVQEDLR_			0	0	0	Q15024	Q15024	Q15024	EXOSC7	Exosome complex component RRP42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	476.592898	1426.75686	-0.033264	-1.5853E-05	-1.0902	-0.00051958	-1.1235	-0.00053543	476.592281575905	7.7398	0.13298	7.7398	7.6956	7.8285	8.8818E-16	768	46	0.808687310729125	0.0306455477926374	0.808687310729125	490.552678152812	0	18.5897012895924						306	16	3	NaN	NaN	NaN	0.004337	1	16291	45.939	40.443	1	84429			21786	1795	18368	18896	21786	21786		
VYIVHGVQEDLR	12	Unmodified	_VYIVHGVQEDLR_			0	0	0	Q15024	Q15024	Q15024	EXOSC7	Exosome complex component RRP42	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.385708	1426.75686	2.9907	0.0021365	-0.52244	-0.00037322	2.4682	0.0017633	714.886951422043	7.7398	0.17731	7.7398	7.6956	7.8729	0	429	43	1.03776581230406	0.0281639553291928	1.03776581230406	419.677863395638	0	11.389649241849						467	21	4	NaN	NaN	NaN	0.0018256	1	16295	48.785	40.784	1	131810			21787	1795	18368	18896	21787	21787		
VYIYSSGSVEAQK	13	Unmodified	_VYIYSSGSVEAQK_			0	0	0	Q9UHY7	Q9UHY7	Q9UHY7	ENOPH1	Enolase-phosphatase E1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.861731	1429.70891	1.8435	0.0013197	-2.2013	-0.0015758	-0.35781	-0.00025614	715.86098110986	6.5338	0.15073	6.5338	6.4806	6.6313	0	483	46	1.00151498427745	0.0302486975418772	1.00151498427745	405.009818119974	0	12.2324874636203						319	18	3	NaN	NaN	NaN	0.0057531	1	16378	36.514	29.824	1	83938			21788	3227	18369	18897	21788	21788		
VYLEDGFAYVPLK	13	Unmodified	_VYLEDGFAYVPLK_			0	0	0	P49643	P49643	P49643	PRIM2	DNA primase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.400492	1512.78643	1.4992	0.0011355	1.2483	0.00094547	2.7475	0.002081	757.401466067309	15.42	0.13312	15.42	15.375	15.508	0	369	37	1.07793901817685	0.024074020010092	1.07793901817685	435.686007075702	0	9.730340469721						310	16	4	NaN	NaN	NaN	0.0003289	1	18899	83.438	65.968	1	76957			21789	1141	18370	18898	21789	21789		
VYLGLFSGSSPNPFSEDVK	19	Unmodified	_VYLGLFSGSSPNPFSEDVK_			0	0	0	Q6NUM9	Q6NUM9	Q6NUM9	RETSAT	All-trans-retinol 13,14-reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.00711	2041.99967	0.98861	0.0010104	0.1814	0.00018539	1.17	0.0011958	1022.50823188841	17.495	0.15074	17.495	17.433	17.583	0	159	46	1.21767724410157	0.0298062737780984	1.21767724410157	491.007784281856	0	12.0188765260868						494	18	5	NaN	NaN	NaN	0.035747	1	32384	44.571	38.955	1	83756			21790	2046	18371	18899	21790	21790		
VYLQNEYK	8	Unmodified	_VYLQNEYK_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.771657	1055.52876	1.8263	0.00096571	0.70247	0.00037144	2.5288	0.0013372	528.77191263286	5.0883	0.23945	5.0883	5.044	5.2835	0	627	40	0.90440375274676	0.0263939831579142	0.90440375274676	366.977893025215	0	10.7098276609501						479	28	4	NaN	NaN	NaN	0.002729	1	5606	89.123	71.727	1	232040			21791	1055	18372	18900	21791	21791		
VYNASSTIVPSLK	13	Unmodified	_VYNASSTIVPSLK_			0	0	0	Q9NRG9	Q9NRG9	Q9NRG9	AAAS	Aladin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.882467	1377.75038	1.8323	0.0012641	-0.47824	-0.00032993	1.3541	0.00093417	689.882007952787	10.081	0.15073	10.081	10.002	10.152	0	423	34	1.04178812298108	0.0221242386339204	1.04178812298108	421.448356845873	0	8.95021148067082						269	18	2	NaN	NaN	NaN	0.054031	1	14743	28.328	26.528	1	71246			21792	3020	18373	18901	21792	21792		
VYNENLVHMIEHAQK	15	Unmodified	_VYNENLVHMIEHAQK_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.973561	1823.89885	0.66615	0.00040567	-0.37897	-0.00023078	0.28718	0.00017489	609.307709231995	9.6558	0.13301	9.6558	9.6115	9.7445	0	636	37	0.898312834727904	0.0243687449926693	0.898312834727904	543.780504705207	0	14.7512625211015						425	16	5	NaN	NaN	NaN	6.3137E-05	1	27826	90.689	86.161	1	159600			21793	370	18374	18902	21793	21793		
VYNENLVHMIEHAQK	15	Unmodified	_VYNENLVHMIEHAQK_			0	0	0	O75934	O75934	O75934	BCAS2	Pre-mRNA-splicing factor SPF27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	912.956703	1823.89885	1.5914	0.0014528	0.21481	0.00019611	1.8062	0.001649	912.956697803244	9.6558	0.070941	9.6558	9.6292	9.7002	0	147	28	1.22562176648663	0.0178714995512526	1.22562176648663	494.61017011097	0	7.21219684154454						173	9	4	NaN	NaN	NaN	1.2848E-06	1	27827	111.38	103.41	1	32590			21794	370	18374	18902	21794	21794		
VYNVTQHAVGIVVNK	15	Unmodified	_VYNVTQHAVGIVVNK_			0	0	0	P46778	P46778	P46778	RPL21	60S ribosomal protein L21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	547.64214	1639.90459	0.27397	0.00015004	-0.013775	-7.5436E-06	0.26019	0.00014249	547.642140689098	8.4495	0.27489	8.4495	8.4051	8.68	0	708	85	0.849494101904619	0.0571136527682236	0.849494101904619	514.663475822257	0	34.6021367125393						1025	32	6	NaN	NaN	NaN	6.1404E-07	1	22763	143.22	126.56	1	989830			21795	1087	18375	18903	21795	21795		
VYNVTQHAVGIVVNK	15	Unmodified	_VYNVTQHAVGIVVNK_			0	0	0	P46778	P46778	P46778	RPL21	60S ribosomal protein L21	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	820.959571	1639.90459	2.5483	0.002092	-0.73217	-0.00060108	1.8161	0.001491	820.959313551246	8.4584	0.17735	8.4584	8.4051	8.5825	0	315	79	1.11400032671325	0.0520598876127911	1.11400032671325	449.944840296285	0	21.0269936696432						911	21	5	NaN	NaN	NaN	2.3119E-24	1	22764	221.56	195.71	1	665330			21796	1087	18375	18903	21796	21796		
VYQSLCPTSWVTDWDEQR	18	Unmodified	_VYQSLCPTSWVTDWDEQR_			0	0	0	P14854	P14854	P14854	COX6B1	Cytochrome c oxidase subunit 6B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1135.51277	2269.01098	0.3544	0.00040243	0.77684	0.00088211	1.1312	0.0012845	1136.01462402489	16.856	0.20398	16.856	16.759	16.963	0	102	64	1.25537494996371	0.0416202298752411	1.25537494996371	505.866575526533	0	16.7713105636079						1198	24	5	NaN	NaN	NaN	0.00011147	1	35358	74.62	66.62	1	298120			21797	703	18376	18904	21797	21797		
VYQVTEQQISEK	12	Unmodified	_VYQVTEQQISEK_			0	0	0	Q5JRA6	Q5JRA6	Q5JRA6	MIA3	Melanoma inhibitory activity protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.372463	1450.73037	2.1421	0.0015559	-4.0428	-0.0029366	-1.9007	-0.0013807	726.368745129275	6.0815	0.1419	6.0815	6.0283	6.1702	0	450	28	1.02367897599655	0.0181216541002778	1.02367897599655	413.915397910748	0	7.32732804287139						234	17	4	NaN	NaN	NaN	0.00011102	1	17004	75.474	56.219	1	47764			21798	1965	18377	18905	21798	21798		
VYQWDDPDPR	10	Unmodified	_VYQWDDPDPR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.791109	1289.56767	1.951	0.0012599	0.52858	0.00034135	2.4795	0.0016013	645.791289377543	7.935	0.23069	7.935	7.864	8.0947	0	519	85	0.97729762293174	0.0566167596248782	0.97729762293174	395.627633178779	0	22.9194813156799						1029	27	4	NaN	NaN	NaN	0.00041989	1	12039	95.311	73.383	1	420040			21799	1127	18378	18906	21799	21799		
VYSLDDIR	8	Unmodified	_VYSLDDIR_			0	0	0	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	490.756007	979.497461	0.22458	0.00011021	1.7382	0.00085303	1.9628	0.00096324	490.756453744135	8.8842	0.12429	8.8842	8.8399	8.9642	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	356.616532403056	0	7.43426898410394						168	15	2	NaN	NaN	NaN	0.022403	1	3833	49.325	35.677	1	44684			21800	1757	18379	18907	21800	21800		
VYSLFLDESR	10	Unmodified	_VYSLFLDESR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	614.814053	1227.61355	0.78801	0.00048448	-0.54784	-0.00033682	0.24017	0.00014766	614.813678001083	12.591	0.20393	12.591	12.538	12.742	0	549	46	0.957085760909907	0.0303408835335462	0.957085760909907	387.65266334564	0	12.2891017612227						514	24	3	NaN	NaN	NaN	6.7171E-06	1	10229	130.31	89.286	1	217000			21801	3325	18380	18908	21801	21801		
VYSPHVLNLTLIDLPGITK	19	Unmodified	_VYSPHVLNLTLIDLPGITK_			0	0	0	P50570;Q9UQ16	P50570	P50570	DNM2;DNM3	Dynamin-2;Dynamin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.405019	2092.19323	-0.53113	-0.00037095	-0.10962	-7.656E-05	-0.64076	-0.00044751	698.739322292428	18.08	0.11527	18.08	18.036	18.151	0	630	40	0.902373728295776	0.0263976438859336	0.902373728295776	545.71028148687	0	15.963968391222						443	14	5	NaN	NaN	NaN	2.6882E-07	1	33226	96.27	84.1	1	165930			21802	1167	18381	18909	21802	21802		
VYSTALSSFLTK	12	Unmodified	_VYSTALSSFLTK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.85846	1315.70237	1.3217	0.0008708	1.2644	0.00083309	2.5861	0.0017039	658.85928070737	13.895	0.13301	13.895	13.85	13.983	0	489	34	0.997481546940468	0.0221885084340552	0.997481546940468	403.713429118263	0	8.98041558203039						271	16	2	NaN	NaN	NaN	0.00063853	1	12849	74.849	51.273	1	141780			21803	2698	18382	18910	21803	21803		
VYSTVTEECVHILHGHR	17	Unmodified	_VYSTVTEECVHILHGHR_			0	0	0	Q8IWA0	Q8IWA0	Q8IWA0	WDR75	WD repeat-containing protein 75	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.670541	2035.98979	1.254	0.00085233	0.12501	8.4964E-05	1.379	0.0009373	679.670995470681	6.5427	0.070944	6.5427	6.5161	6.587	0	573	28	0.940896116921038	0.0182221791516658	0.940896116921038	569.110142327764	0	11.0218618017709						167	9	4	NaN	NaN	NaN	1.62E-05	1	32262	59.731	49.481	1	34364			21804	2200	18383	18911	21804	21804		
VYSYALALK	9	Unmodified	_VYSYALALK_			0	0	0	Q9UKK9	Q9UKK9	Q9UKK9	NUDT5	ADP-sugar pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.294768	1026.57498	0.68265	0.00035108	0.4517	0.00023231	1.1344	0.00058339	514.29472547391	9.9218	0.17731	9.9218	9.8509	10.028	0	663	76	0.880024865079826	0.0508140477293471	0.880024865079826	357.215397438511	0	20.6261902082183						582	21	2	NaN	NaN	NaN	0.012363	1	4905	41.025	36.485	1	287840			21805	3264	18384	18912	21805	21805		
VYSYFECR	8	Unmodified	_VYSYFECR_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.247492	1122.48043	0.69035	0.00038815	1.4427	0.00081113	2.133	0.0011993	562.24843788482	7.527	0.22166	7.527	7.4294	7.6511	-8.8818E-16	618	46	0.910492137470517	0.0304461528019007	0.910492137470517	369.164432422844	0	12.344573067702						440	26	4	NaN	NaN	NaN	0.001484	1	7328	85.813	80.906	1	161380			21806	1067	18385	18913	21806	21806		
VYTDVQQVASSLTHPR	16	Unmodified	_VYTDVQQVASSLTHPR_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	600.97948	1799.91661	0.033887	2.0365E-05	0.23742	0.00014268	0.2713	0.00016305	601.313775111063	11.589	0.17741	11.589	11.509	11.687	0	615	31	0.912521036363781	0.0202875850561227	0.912521036363781	552.436708280876	0	12.2820255761258						449	21	5	NaN	NaN	NaN	0.00066781	1	27210	85.813	76.071	1	127990			21807	1733	18386	18914	21807	21807		
VYTDVQQVASSLTHPR	16	Unmodified	_VYTDVQQVASSLTHPR_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	900.965582	1799.91661	1.2655	0.0011402	0.31861	0.00028706	1.5841	0.0014272	901.46770520832	11.598	0.10647	11.598	11.536	11.642	0	174	34	1.20774045859593	0.02187293336483	1.20774045859593	487.443021074728	0	8.82789728805972						303	13	4	NaN	NaN	NaN	1.8245E-17	1	27211	187.47	178.67	1	56873			21808	1733	18386	18914	21808	21808		
VYTHEVVTLWYR	12	Unmodified	_VYTHEVVTLWYR_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	522.608548	1564.80381	-1.3021	-0.00068049	-0.053758	-2.8095E-05	-1.3559	-0.00070858	522.607893927647	11.279	0.079808	11.279	11.243	11.323	0	774	22	0.804600385996946	0.0143052324654583	0.804600385996946	487.660445797999	0	8.67026186260847						165	10	4	NaN	NaN	NaN	0.0012072	1	20497	54.584	38.296	1	38121			21809	540	18387	18915	21809	21809		
VYTPSNADIGLR	12	Unmodified	_VYTPSNADIGLR_			0	0	0	Q6L8Q7	Q6L8Q7	Q6L8Q7	PDE12	2,5-phosphodiesterase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.343509	1304.67246	1.2463	0.00081423	-1.3281	-0.00086774	-0.08189	-5.3502E-05	653.342962914196	8.5559	0.10642	8.5559	8.5027	8.6091	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	397.213961552528	0	7.35639088869533						219	13	3	NaN	NaN	NaN	5.0906E-05	1	12502	87.895	66.62	1	63891			21810	2043	18388	18916	21810	21810		
VYTVVDEMFLAGEIR	15	Unmodified	_VYTVVDEMFLAGEIR_			0	0	0	P53680	P53680	P53680	AP2S1	AP-2 complex subunit sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.445105	1740.87566	0.91983	0.00080158	4.2365	0.0036918	5.1563	0.0044934	871.449202249592	18.169	0.097536	18.169	18.115	18.213	0	306	37	1.12000185836644	0.0240011742014585	1.12000185836644	452.148973564292	0	9.6893645295869						161	12	2	NaN	NaN	NaN	0.047591	1	25633	19.89	18.416	1	37213			21811	1243	18389	18917	21811	21811		
VYVAESLISSAGEGLFSK	18	Unmodified	_VYVAESLISSAGEGLFSK_			0	0	0	Q8WTS6	Q8WTS6	Q8WTS6	SETD7	Histone-lysine N-methyltransferase SETD7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	928.985649	1855.95674	1.0649	0.00098929	1.4079	0.0013079	2.4728	0.0022972	928.98749406213	17.566	0.11528	17.566	17.53	17.646	0	213	40	1.18187287897418	0.025885345726578	1.18187287897418	476.892748158668	0	10.4448912232418						227	14	2	NaN	NaN	NaN	1.5258E-07	1	28609	92.747	86.371	1	76283			21812	2360	18390	18918	21812	21812		
VYVGNLGTGAGK	12	Unmodified	_VYVGNLGTGAGK_			0	0	0	Q16629	Q16629	Q16629	SRSF7	Serine/arginine-rich splicing factor 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.308938	1134.60332	2.0788	0.0011814	-0.013847	-7.8693E-06	2.065	0.0011735	568.309380776828	6.0195	0.3458	6.0195	5.9663	6.3121	0	618	43	0.910492137470517	0.0284026223535851	0.910492137470517	369.116583495261	0	11.514518900281						590	40	4	NaN	NaN	NaN	5.4198E-05	1	7664	112.8	68.035	1	460030			21813	1894	18391	18919	21813	21813		
VYVGSIYYELGEDTIR	16	Unmodified	_VYVGSIYYELGEDTIR_			0	0	0	Q9UHX1	Q9UHX1	Q9UHX1	PUF60	Poly(U)-binding-splicing factor PUF60	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.969999	1875.92544	1.4375	0.0013498	0.026337	2.473E-05	1.4638	0.0013745	939.472071547934	15.65	0.23047	15.65	15.553	15.783	-1.7764E-15	243	58	1.16194328902838	0.0378844489628292	1.16194328902838	468.814017752307	0	15.2853937849649						964	27	5	NaN	NaN	NaN	1.5646E-12	1	29064	130.71	112.61	1	271230			21814	3225	18392	18920	21814	21814		
VYVIEPHSMEFAPCQVEAR	19	Unmodified	_VYVIEPHSMEFAPCQVEAR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	754.694246	2261.06091	0.19466	0.00014691	1.3242	0.00099936	1.5189	0.0011463	755.029812594292	12.015	0.13301	12.015	11.97	12.103	0	564	58	0.946969335010767	0.0384424338892226	0.946969335010767	572.397612223147	0	23.2366102604443						493	16	4	NaN	NaN	NaN	1.8779E-07	1	35286	77.696	70.049	1	97347			21815	2354	18393	18921	21815	21815		
VYVPTGFSAFPFELLHTPEK	20	Unmodified	_VYVPTGFSAFPFELLHTPEK_			0	0	0	P07099	P07099	P07099	EPHX1	Epoxide hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.396412	2278.16741	1.0252	0.00077957	0.41081	0.00031238	1.436	0.0010919	760.731091927792	19.002	0.1596	19.002	18.922	19.082	0	372	37	1.07593298845566	0.0240839792188599	1.07593298845566	650.320165253991	0	14.5569450083165						541	19	4	NaN	NaN	NaN	0.036008	1	35450	11.918	11.918	1	110600			21816	551	18394	18922	21816	21816		
VYVQHLLK	8	Unmodified	_VYVQHLLK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.302927	998.591301	0.79291	0.00039669	-0.058432	-2.9234E-05	0.73448	0.00036746	500.302784521214	5.8243	0.20397	5.8243	5.78	5.984	0	648	37	0.890187667287968	0.0243822699655701	0.890187667287968	361.474572438152	0	9.90080062300495						390	24	3	NaN	NaN	NaN	0.011132	1	4264	81.32	68.768	1	164980			21817	728	18395	18923	21817	21817		
VYVSDNIR	8	Unmodified	_VYVSDNIR_			0	0	0	Q8TEM1	Q8TEM1	Q8TEM1	NUP210	Nuclear pore membrane glycoprotein 210	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	483.256174	964.497795	1.1595	0.00056032	-0.15009	-7.2533E-05	1.0094	0.00048779	483.255963223911	5.1327	0.12414	5.1327	5.0795	5.2036	0	699	31	0.85560534332665	0.0203693921717962	0.85560534332665	347.598725515464	0	8.2752811371094						206	15	3	NaN	NaN	NaN	0.0032571	1	3532	81.32	55.097	1	63800			21818	2354	18396	18924	21818	21818		
WAAVVVPSGEEQR	13	Unmodified	_WAAVVVPSGEEQR_			0	0	0	P04439;P01889;P13747;P17693;P01893	P04439;P01893	P04439	HLA-A;HLA-B;HLA-E;HLA-G;HLA-H	HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain;HLA class I histocompatibility antigen, alpha chain E;HLA class I histocompatibility antigen, alpha chain G;Putative HLA class I histocompatibility antigen, alpha chain H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	714.367515	1426.72048	1.3616	0.00097271	-1.7911	-0.0012795	-0.4295	-0.00030682	714.366956721091	9.2568	0.29265	9.2568	9.1238	9.4164	0	504	58	0.987393073566096	0.0383309147863334	0.987393073566096	399.306969890938	0	15.5012242299814						620	34	4	NaN	NaN	NaN	2.8222E-05	1	16285	72.922	66.231	1	202340			21819	514;492	18397	18925	21819	21819		
WADNFMAEGCGGSK	14	Unmodified	_WADNFMAEGCGGSK_			0	0	0	Q8N357	Q8N357	Q8N357	SLC35F6	Solute carrier family 35 member F6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.311026	1528.6075	1.2908	0.00098789	2.6218	0.0020065	3.9127	0.0029944	765.313556468679	9.5228	0.11528	9.5228	9.4696	9.5849	0	456	37	1.01965166402748	0.0241705518393689	1.01965166402748	412.088493704956	0	9.76844019472384						304	14	4	NaN	NaN	NaN	0.0046394	1	19368	47.361	44.259	1	77562			21820	2244	18398	18926	21820	21820		
WAELLPLLQQCQVVR	15	Unmodified	_WAELLPLLQQCQVVR_			0	0	0	P13489	P13489	P13489	RNH1	Ribonuclease inhibitor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	927.008738	1852.00292	1.7354	0.0016087	-1.1192	-0.0010375	0.61617	0.0005712	927.509472084757	18.328	0.15958	18.328	18.266	18.426	0	276	85	1.13998907770044	0.0559180845020093	1.13998907770044	459.999678756086	0	22.56363803017						939	19	4	NaN	NaN	NaN	0.00017999	1	28552	70.389	54.101	1	274950			21821	678	18399	18927	21821	21821		
WAEQYLK	7	Unmodified	_WAEQYLK_			0	0	0	P30040	P30040	P30040	ERP29	Endoplasmic reticulum resident protein 29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	469.242535	936.470518	0.89895	0.00042182	-1.2511	-0.00058708	-0.35219	-0.00016526	469.242055537253	7.6865	0.25725	7.6865	7.6422	7.8995	0	729	55	0.835224628594324	0.0367261086862821	0.835224628594324	339.461538748022	0	14.9266448091389						694	30	4	NaN	NaN	NaN	0.016674	1	3000	42.229	11.667	1	315480			21822	892	18400	18928	21822	21822		
WAESVPEEAPGFSNTSLIILHQLEDK	26	Unmodified	_WAESVPEEAPGFSNTSLIILHQLEDK_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	970.822178	2909.4447	1.5529	0.0015076	-1.1496	-0.0011161	0.40329	0.00039152	971.155347653018	18.319	0.070933	18.319	18.284	18.355	0	405	46	1.05384839605172	0.0301486093573291	1.05384839605172	636.133713363302	0	18.1985823530883						278	9	4	NaN	NaN	NaN	0.023254	1	38086	16.265	15.169	1	51703			21823	2369	18401	18929	21823	21823		
WAEYHADIYDK	11	Unmodified	_WAEYHADIYDK_			0	0	0	Q9NRX4	Q9NRX4	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.882337	1409.62518	-0.57802	-0.00027218	0.91145	0.00042919	0.33343	0.00015701	470.882484967591	7.2255	0.13305	7.2255	7.19	7.3231	8.8818E-16	750	31	0.820941264895493	0.0204147391156737	0.820941264895493	498.043984668231	0	12.385097996538						249	16	4	NaN	NaN	NaN	0.025837	1	15738	26.579	22.971	1	94590			21824	3030	18402	18930	21824	21824		
WAEYHADIYDK	11	Unmodified	_WAEYHADIYDK_			0	0	0	Q9NRX4	Q9NRX4	Q9NRX4	PHPT1	14 kDa phosphohistidine phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	705.819867	1409.62518	1.9456	0.0013732	0.93763	0.0006618	2.8832	0.002035	705.820630830063	7.2255	0.15075	7.2255	7.1545	7.3053	0	480	40	1.00353128488872	0.0262119132032216	1.00353128488872	405.880589712303	0	10.6014699776809						359	18	4	NaN	NaN	NaN	0.00049419	1	15740	62.271	50.916	1	117630			21825	3030	18402	18930	21825	21825		
WAHLDIAGVMTNK	13	Unmodified	_WAHLDIAGVMTNK_			0	0	0	P28838	P28838	P28838	LAP3	Cytosol aminopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.918616	1454.73402	-1.7523	-0.00085148	-0.44664	-0.00021703	-2.199	-0.0010685	485.918592339878	12.201	0.097572	12.201	12.165	12.263	0	828	22	0.767766820543916	0.0143431242639176	0.767766820543916	465.644268155918	0	8.69898701302276						176	12	4	NaN	NaN	NaN	0.0035946	1	17096	54.584	47.893	1	50221			21826	880	18403	18931	21826	21826		
WAIAQLNYADMLK	13	Unmodified	_WAIAQLNYADMLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.897594	1535.78064	1.2733	0.00097908	1.7538	0.0013485	3.0271	0.0023276	768.898700189352	17.131	0.14185	17.131	17.087	17.229	0	363	37	1.08195024817156	0.0240640669775463	1.08195024817156	437.247912492006	0	9.72499712420375						275	17	2	NaN	NaN	NaN	1.8325E-06	1	19605	94.791	91.055	1	181900			21827	1737	18404	18932	21827	21827		
WAIELSGPGGGSR	13	Unmodified	_WAIELSGPGGGSR_			0	0	0	Q5J8M3	Q5J8M3	Q5J8M3	EMC4	ER membrane protein complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.828026	1285.6415	1.0141	0.00065291	-0.57184	-0.00036817	0.44226	0.00028474	643.827681218236	11.438	0.15077	11.438	11.385	11.536	0	573	37	0.940896116921038	0.0242979231728671	0.940896116921038	380.903981136316	0	9.8365542204337						268	18	3	NaN	NaN	NaN	0.00050824	1	11926	47.334	39.777	1	72588			21828	1964	18405	18933	21828	21828		
WAIIEEFTK	9	Unmodified	_WAIIEEFTK_			0	0	0	P03891	P03891	P03891	MT-ND2	NADH-ubiquinone oxidoreductase chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.802957	1135.59136	0.18531	0.0001054	-1.8043	-0.0010263	-1.619	-0.00092087	568.802153923496	15.234	0.13302	15.234	15.171	15.304	0	633	46	0.900343422309015	0.0304545980014471	0.900343422309015	364.998455339462	0	12.3462680495901						326	16	4	NaN	NaN	NaN	0.0032423	1	7689	72.038	63.061	1	108870			21829	498	18406	18934	21829	21829		
WALWFFK	7	Unmodified	_WALWFFK_			0	0	0	P06730;A6NMX2	P06730	P06730	EIF4E;EIF4E1B	Eukaryotic translation initiation factor 4E;Eukaryotic translation initiation factor 4E type 1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	499.268356	996.522159	-2.336	-0.0011663	2.1815	0.0010891	-0.15454	-7.7158E-05	499.269308875032	19.064	0.088649	19.064	19.038	19.126	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	335.023148300984	0	7.45836756451507						150	11	3	NaN	NaN	NaN	0.022545	1	4214	49.406	40.643	1	37065			21830	543	18407	18935	21830	21830		
WANFHLENSGWQK	13	Unmodified	_WANFHLENSGWQK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	539.591668	1615.75317	-0.034364	-1.8542E-05	0.55399	0.00029893	0.51962	0.00028039	539.591975209451	10.454	0.20397	10.454	10.401	10.605	0	750	61	0.820941264895493	0.0408294930357924	0.820941264895493	497.427020388932	0	24.7395202717339						772	24	5	NaN	NaN	NaN	1.6875E-06	1	22064	153.33	141.98	1	572550			21831	683	18408	18936	21831	21831		
WANFHLENSGWQK	13	Unmodified	_WANFHLENSGWQK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	808.883864	1615.75317	2.5007	0.0020228	-0.67642	-0.00054714	1.8243	0.0014757	808.883406248534	10.463	0.12418	10.463	10.418	10.543	0	399	49	1.0578662689527	0.0321341264646959	1.0578662689527	427.325787151163	0	12.980601886036						330	15	3	NaN	NaN	NaN	0.00034098	1	22065	86.838	63.034	1	87126			21832	683	18408	18936	21832	21832		
WAQFFIHPLMIR	12	Unmodified	_WAQFFIHPLMIR_			0	0	0	O43847	O43847	O43847	NRD1	Nardilysin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	520.28323	1557.82786	-1.1981	-0.00062337	-1.4855	-0.00077289	-2.6837	-0.0013963	520.616655497231	16.519	0.12411	16.519	16.484	16.608	0	735	28	0.831145085810763	0.0183592202134729	0.831145085810763	503.768696154467	0	11.127780922066						284	15	4	NaN	NaN	NaN	0.023592	1	20302	39.01	34.482	1	83027			21833	240	18409	18937	21833	21833		
WAVDPQNTAWSNDDSK	16	Unmodified	_WAVDPQNTAWSNDDSK_			0	0	0	Q96BK5	Q96BK5	Q96BK5	PINX1	PIN2/TERF1-interacting telomerase inhibitor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.405554	1832.79656	2.3956	0.0021977	-0.059161	-5.4274E-05	2.3364	0.0021435	917.405554968056	10.392	0.15072	10.392	10.33	10.48	0	321	25	1.10999792833052	0.0160117991526911	1.10999792833052	447.932767813215	0	6.46146207040357						207	18	3	NaN	NaN	NaN	0.00020932	1	28034	65.12	63.41	1	40320			21834	2483	18410	18938	21834	21834		
WAVVSGATDGIGK	13	Unmodified	_WAVVSGATDGIGK_			0	0	0	Q3SXM5	Q3SXM5	Q3SXM5	HSDL1	Inactive hydroxysteroid dehydrogenase-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.832777	1259.651	1.4489	0.00091399	0.15046	9.4913E-05	1.5993	0.0010089	630.832947389442	9.7268	0.1153	9.7268	9.6913	9.8066	0	570	43	0.942920803299286	0.0283318814612601	0.942920803299286	381.80734095663	0	11.4721409127598						225	14	3	NaN	NaN	NaN	0.00037337	1	11206	85.821	69.942	1	46683			21835	1934	18411	18939	21835	21835		
WCELIPGAEFR	11	Unmodified	_WCELIPGAEFR_			0	0	0	O75794	O75794	O75794	CDC123	Cell division cycle protein 123 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	689.33463	1376.65471	1.2277	0.0008463	-1.159	-0.00079895	0.068686	4.7347E-05	689.334298558963	14.302	0.28372	14.302	14.152	14.435	0	501	52	0.98941132619024	0.034319796480838	0.98941132619024	400.262844696034	0	13.8839520078103						819	33	4	NaN	NaN	NaN	0.0015755	1	14696	53.517	36.865	1	307220			21836	359	18412	18940	21836	21836		
WCEYGLTFTEK	11	Unmodified	_WCEYGLTFTEK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.323928	1432.6333	1.6384	0.0011753	1.5671	0.0011241	3.2055	0.0022994	717.325019964959	12.396	0.19509	12.396	12.343	12.538	0	471	64	1.00957851518677	0.0423014022048924	1.00957851518677	408.262686856849	0	17.1062318206986						707	23	5	NaN	NaN	NaN	0.00034603	1	16460	97.277	79.882	1	511580			21837	1070	18413	18941	21837	21837		
WCNEHLK	7	Unmodified	_WCNEHLK_			0	0	0	O75369;P21333	O75369;P21333	O75369	FLNB;FLNA	Filamin-B;Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.729269	985.443985	0.99922	0.00049334	2.6006	0.001284	3.5998	0.0017773	493.730217839212	2.6853	0.20397	2.6853	2.6498	2.8538	0	732	28	0.833184998970724	0.0183592202134729	0.833184998970724	338.389071883257	0	7.45639863441147						258	24	3	NaN	NaN	NaN	0.040437	1	3954	53.679	38.181	1	43501			21838	326;792	18414	18942	21838	21838		
WCTISTHEANK	11	Unmodified	_WCTISTHEANK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.811519	1345.60848	2.6645	0.0017954	-1.403	-0.00094534	1.2615	0.00085002	673.811276963017	3.98	0.133	3.98	3.9445	4.0775	-4.4409E-16	537	25	0.965173861991602	0.0161694889209075	0.965173861991602	390.547223500413	0	6.54280980055808						160	16	3	NaN	NaN	NaN	0.0063473	1	13764	63.397	61.753	1	32994		+	21839	37	18415	18943	21839	21839		
WCTISTHEANK	11	Unmodified	_WCTISTHEANK_			0	0	0	CON__Q29443;CON__Q0IIK2	CON__Q29443	CON__Q29443			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.543438	1345.60848	0.66818	0.00030038	1.2837	0.00057709	1.9519	0.00087746	449.544017058694	3.98	0.097527	3.98	3.9534	4.0509	-4.4409E-16	765	25	0.810730346695089	0.0163408788985463	0.810730346695089	492.076218306202	0	9.91816566997267						128	12	2	NaN	NaN	NaN	0.04457	1	13765	14.455	10.562	1	39866		+	21840	37	18415	18943	21840	21840		
WDAWNALGSLPK	12	Unmodified	_WDAWNALGSLPK_			0	0	0	O75521	O75521	O75521	ECI2	Enoyl-CoA delta isomerase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.348594	1356.68264	0.74495	0.00050608	-1.7293	-0.0011748	-0.98436	-0.00066872	679.347059943605	16.608	0.1862	16.608	16.537	16.723	0	525	52	0.973257487423603	0.0343435388719882	0.973257487423603	393.785492963414	0	13.8955903854535						688	22	4	NaN	NaN	NaN	0.0022193	1	14089	69.276	59.025	1	322970			21841	341	18416	18944	21841	21841		
WDAWNELK	8	Unmodified	_WDAWNELK_			0	0	0	P07108	P07108	P07108	DBI	Acyl-CoA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.256174	1060.49779	-0.18552	-9.8556E-05	0.024047	1.2775E-05	-0.16147	-8.5781E-05	531.256042900484	11.811	0.23943	11.811	11.713	11.953	0	687	58	0.863749705078866	0.038677676741416	0.863749705078866	350.460644381755	0	15.6932076900081						841	28	4	NaN	NaN	NaN	0.0031511	1	5732	94.806	62.678	1	645930			21842	552	18417	18945	21842	21842		
WDEMNILATYHPADK	15	Unmodified	_WDEMNILATYHPADK_			0	0	0	P41236	P41236	P41236	PPP1R2	Protein phosphatase inhibitor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.950533	1802.82977	-0.1423	-8.5657E-05	-0.54205	-0.00032629	-0.68435	-0.00041194	602.284560021172	13.07	0.16849	13.07	13.008	13.176	0	639	31	0.896281965493857	0.0203101032426732	0.896281965493857	542.598944582914	0	12.2955063340722						424	20	5	NaN	NaN	NaN	0.00013707	1	27277	63.908	63.389	1	155950			21843	1033	18418	18946	21843	21843		
WDETPASQMGGSTPVLTPGK	20	Unmodified	_WDETPASQMGGSTPVLTPGK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1029.99368	2057.97281	2.1566	0.0022213	-1.655	-0.0017047	0.50158	0.00051662	1030.49412611832	11.137	0.1064	11.137	11.092	11.199	0	183	43	1.20177511391933	0.027844013131697	1.20177511391933	484.570123478787	0	11.2270396724799						345	13	4	NaN	NaN	NaN	0.00042914	1	32667	57.62	53.548	1	77106			21844	343	18419	18947	21844	21844		
WDFTPCK	7	Unmodified	_WDFTPCK_			0	0	0	P38606	P38606	P38606	ATP6V1A	V-type proton ATPase catalytic subunit A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.212921	952.411288	-1.5521	-0.0007407	-0.53141	-0.00025359	-2.0836	-0.0009943	477.212717696974	8.7599	0.16852	8.7599	8.6891	8.8576	0	780	31	0.800512323802183	0.020440313348464	0.800512323802183	325.274602982995	0	8.30557458215048						293	20	3	NaN	NaN	NaN	0.060813	1	3283	42.229	36.481	1	79613			21845	1006	18420	18948	21845	21845		
WDGEGSMYVPEDLLPVYK	18	Unmodified	_WDGEGSMYVPEDLLPVYK_			0	0	0	O00764	O00764	O00764	PDXK	Pyridoxal kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1049.49552	2096.97649	2.1672	0.0022744	-0.61467	-0.00064509	1.5525	0.0016293	1049.99633541831	17.805	0.16844	17.805	17.752	17.92	0	165	52	1.21370334790578	0.0337711789095965	1.21370334790578	489.318720765922	0	13.6152463378421						709	20	5	NaN	NaN	NaN	2.3073E-10	1	33271	98.167	96.183	1	179640			21846	99	18421	18949	21846	21846		
WDGVPFILR	9	Unmodified	_WDGVPFILR_			0	0	0	P11413	P11413	P11413	G6PD	Glucose-6-phosphate 1-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.805834	1101.59712	-0.79602	-0.00043925	-0.81518	-0.00044982	-1.6112	-0.00088907	551.805445934804	16.315	0.23054	16.315	16.245	16.475	0	669	49	0.875957769340875	0.0325412920913477	0.875957769340875	355.243946012817	0	13.1970939872873						670	27	4	NaN	NaN	NaN	0.0014018	1	6766	93.561	71.175	1	385320			21847	653	18422	18950	21847	21847		
WDHESVCK	8	Unmodified	_WDHESVCK_			0	0	0	O95232	O95232	O95232	LUC7L3	Luc7-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.729466	1059.44438	0.6866	0.0003644	2.2462	0.0011921	2.9328	0.0015565	530.730041886448	2.6143	0.097534	2.6143	2.5966	2.6941	0	711	22	0.847456455381371	0.0142655083494234	0.847456455381371	343.854140781279	0	5.78820786029848						84	12	2	NaN	NaN	NaN	0.037142	1	5696	39.324	30.561	1	14973			21848	413	18423	18951	21848	21848		
WDLSAQQIEER	11	Unmodified	_WDLSAQQIEER_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.836048	1373.65754	1.3592	0.0009349	0.40107	0.00027587	1.7603	0.0012108	687.836151573119	10.56	0.17732	10.56	10.516	10.693	0	501	46	0.98941132619024	0.030261243599951	0.98941132619024	400.271521593219	0	12.2423442105679						360	21	3	NaN	NaN	NaN	0.018611	1	14613	58.889	35.054	1	133090			21849	1225	18424	18952	21849	21849		
WDMSAENAR	9	Unmodified	_WDMSAENAR_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.232373	1078.45019	0.34449	0.00018611	1.8224	0.00098453	2.1669	0.0011706	540.233119141108	5.8332	0.079773	5.8332	5.7978	5.8775	0	684	25	0.86578508874114	0.0162819401050979	0.86578508874114	351.211504127022	0	6.60487775636346						127	10	3	NaN	NaN	NaN	0.052595	1	6161	29.31	21.127	1	30017			21850	3238	18425	18953	21850	21850		
WDNLIYYALGGHK	13	Unmodified	_WDNLIYYALGGHK_			0	0	0	Q15269	Q15269	Q15269	PWP2	Periodic tryptophan protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.264781	1548.77251	-0.96484	-0.00049908	-1.1476	-0.00059359	-2.1124	-0.0010927	517.264031856119	15.624	0.11528	15.624	15.579	15.695	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	503.794609030394	0	12.3656967541856						300	14	4	NaN	NaN	NaN	0.00025333	1	20004	85.821	71.366	1	110650			21851	1826	18426	18954	21851	21851		
WDPTANEDPEWILVEK	16	Unmodified	_WDPTANEDPEWILVEK_			0	0	0	Q14257	Q14257	Q14257	RCN2	Reticulocalbin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.465081	1940.91561	2.1175	0.002057	0.4092	0.00039752	2.5267	0.0024546	971.966856133925	16.005	0.14186	16.005	15.961	16.103	0	267	43	1.14597988355104	0.0279513333515433	1.14597988355104	462.259522200261	0	11.2748663265426						498	17	5	NaN	NaN	NaN	1.6345E-12	1	30526	114.5	108.8	1	262090			21852	1744	18427	18955	21852	21852		
WDPTGNLLASCSDDMTLK	18	Unmodified	_WDPTGNLLASCSDDMTLK_			0	0	0	Q9BZK7	Q9BZK7	Q9BZK7	TBL1XR1	F-box-like/WD repeat-containing protein TBL1XR1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1012.45862	2022.90268	1.3379	0.0013546	1.8004	0.0018228	3.1383	0.0031774	1012.96216602446	15.154	0.062093	15.154	15.127	15.189	0	159	46	1.21767724410157	0.0298103635319158	1.21767724410157	491.039080887912	0	12.0212918329165						255	8	4	NaN	NaN	NaN	6.8291E-05	1	32030	86.135	72.96	1	50525			21853	2814	18428	18956	21853	21853		
WDQSTFLGR	9	Unmodified	_WDQSTFLGR_			0	0	0	Q9BWM7	Q9BWM7	Q9BWM7	SFXN3	Sideroflexin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.272355	1108.53016	0.50785	0.00028199	-0.085995	-4.7751E-05	0.42185	0.00023424	555.272471268386	9.5849	0.24821	9.5849	9.4874	9.7356	0	648	52	0.890187667287968	0.0345391592225333	0.890187667287968	360.986968698524	0	14.0062448035517						542	29	4	NaN	NaN	NaN	0.0012131	1	6941	74.486	0	1	229110			21854	2781	18429	18957	21854	21854		
WDQTADQTPGATPK	14	Unmodified	_WDQTADQTPGATPK_			0	0	0	O75533	O75533	O75533	SF3B1	Splicing factor 3B subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.357345	1514.70014	2.3571	0.0017875	-0.38977	-0.00029558	1.9673	0.0014919	758.357005959399	4.7958	0.16848	4.7958	4.7514	4.9199	0	489	61	0.997481546940468	0.0403121021954936	0.997481546940468	403.161749627427	0	16.2933316432217						517	20	5	NaN	NaN	NaN	2.0306E-11	1	18954	171.2	157.4	1	148790			21855	343	18430	18958	21855	21855		
WDTAFDHEK	9	Unmodified	_WDTAFDHEK_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.753995	1147.49344	1.4917	0.00085738	1.3824	0.00079453	2.8741	0.0016519	574.754651887173	5.6026	0.12418	5.6026	5.5671	5.6913	0	609	31	0.916577990479294	0.0202819613609688	0.916577990479294	371.533686446844	0	8.22126644004703						194	15	3	NaN	NaN	NaN	0.011712	1	7986	56.378	51.07	1	59764			21856	1218	18431	18959	21856	21856		
WDTCAPEVILHAVGGK	16	Unmodified	_WDTCAPEVILHAVGGK_			0	0	0	O95861	O95861	O95861	BPNT1	3(2),5-bisphosphate nucleotidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	584.962773	1751.86649	-0.19575	-0.00011451	-0.061104	-3.5743E-05	-0.25686	-0.00015025	585.296747228701	14.985	0.12417	14.985	14.914	15.038	0	645	31	0.892219381832517	0.0203157386472897	0.892219381832517	540.259294240941	0	12.3016455897038						253	15	3	NaN	NaN	NaN	0.018359	1	25952	32.759	32.759	1	62390			21857	459	18432	18960	21857	21857		
WDVLIQQATQCLNR	14	Unmodified	_WDVLIQQATQCLNR_			0	0	0	Q9BUJ2	Q9BUJ2	Q9BUJ2	HNRNPUL1	Heterogeneous nuclear ribonucleoprotein U-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	872.943595	1743.87264	2.3414	0.0020439	7.4334	0.0064889	9.7747	0.0085328	872.952108550315	14.533	0.2483	14.533	14.471	14.719	0	315	67	1.11400032671325	0.0440021704183331	1.11400032671325	449.72001523795	0	17.7636004914112						625	29	3	NaN	NaN	NaN	0.00016413	1	25719	88.734	69.177	1	191360			21858	2746	18433	18961	21858	21858		
WDVTVLELSYHK	12	Unmodified	_WDVTVLELSYHK_			0	0	0	Q6P1J9	Q6P1J9	Q6P1J9	CDC73	Parafibromin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	745.387916	1488.76128	0.8531	0.00063589	1.8588	0.0013856	2.7119	0.0020214	745.389328475796	14.134	0.053202	14.134	14.099	14.152	0	378	22	1.07192009927972	0.0140460810726906	1.07192009927972	433.316637081318	0	5.67803572176655						100	7	3	NaN	NaN	NaN	0.00043237	1	18197	63.212	45.742	1	22196			21859	2056	18434	18962	21859	21859		
WDYLTQVEK	9	Unmodified	_WDYLTQVEK_			0	0	0	Q9HB71	Q9HB71	Q9HB71	CACYBP	Calcyclin-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.295496	1180.57644	1.9037	0.0011256	1.9545	0.0011557	3.8582	0.0022813	591.296487760113	10.463	0.23057	10.463	10.374	10.605	0	567	85	0.944945209309785	0.0566794969443087	0.944945209309785	382.904818162125	0	22.967313085627						1005	27	4	NaN	NaN	NaN	2.0601E-05	1	8895	138.26	104.86	1	1155800			21860	2950	18435	18963	21860	21860		
WDYMTPEQR	9	Unmodified	_WDYMTPEQR_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.268955	1224.52336	1.3679	0.00083887	2.1872	0.0013413	3.555	0.0021802	613.269017165543	8.2721	0.26612	8.2721	8.1479	8.414	0	588	49	0.93076847747433	0.0324286658287691	0.93076847747433	377.00382474744	0	13.1350935756629						388	31	3	NaN	NaN	NaN	0.0032423	1	10132	62.969	60.998	1	150540			21861	1586	18436	18964	21861	21861		
WDYQPDICK	9	Unmodified	_WDYQPDICK_			0	0	0	O15541;Q8IZP6	O15541	O15541	RNF113A;RNF113B	RING finger protein 113A;RING finger protein 113B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.771331	1223.52811	0.90638	0.00055541	2.0417	0.0012511	2.9481	0.0018065	612.773499031046	8.831	0.13311	8.831	8.7511	8.8842	0	579	34	0.936845902828289	0.0222838959578864	0.936845902828289	379.468901219823	0	9.02607941018647						193	16	3	NaN	NaN	NaN	0.029899	1	10107	28.096	19.333	1	39297			21862	180	18437	18965	21862	21862		
WEAAEGLLQEALDK	14	Unmodified	_WEAAEGLLQEALDK_			0	0	0	O14579	O14579	O14579	COPE	Coatomer subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	786.898845	1571.78314	1.1032	0.00086808	0.3328	0.00026188	1.436	0.00113	786.899039041439	16.413	0.18622	16.413	16.377	16.564	0	393	52	1.0618830335572	0.0341260341638749	1.0618830335572	429.050340544863	0	13.788511650297						608	22	5	NaN	NaN	NaN	1.2903E-07	1	20719	142.51	123.19	1	400350			21863	106	18438	18966	21863	21863		
WEALHAAECPCGPSLIR	17	Unmodified	_WEALHAAECPCGPSLIR_			0	0	0	P53701	P53701	P53701	HCCS	Cytochrome c-type heme lyase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	656.313589	1965.91894	0.38245	0.00025101	-0.71254	-0.00046765	-0.33009	-0.00021664	656.647695104066	10.871	0.097551	10.871	10.826	10.924	0	678	91	0.869855008346864	0.0610742960217544	0.869855008346864	526.267107480228	0	36.9502880369038						691	12	5	NaN	NaN	NaN	8.32E-07	1	31026	100.69	98.85	1	172710			21864	1244	18439	18967	21864	21864		
WEAVDESELEAQAVTTSK	18	Unmodified	_WEAVDESELEAQAVTTSK_			0	0	0	O15042	O15042	O15042	U2SURP	U2 snRNP-associated SURP motif-containing protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	996.973467	1991.93238	1.1292	0.0011258	0.43513	0.00043381	1.5643	0.0015596	996.973866599	12.015	0.14186	12.015	11.961	12.103	0	219	43	1.17788915118882	0.0278975958316861	1.17788915118882	475.044519815483	0	11.2511436262862						314	17	3	NaN	NaN	NaN	3.8521E-10	1	31490	127.07	116.58	1	83972			21865	140	18440	18968	21865	21865		
WEDAIPLALK	10	Unmodified	_WEDAIPLALK_			0	0	0	P09960	P09960	P09960	LTA4H	Leukotriene A-4 hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.324057	1154.63356	0.29052	0.00016802	-1.397	-0.00080794	-1.1065	-0.00063993	578.323053589245	14.232	0.14188	14.232	14.187	14.329	0	621	55	0.908462957275599	0.0365277897935211	0.908462957275599	368.217239478564	0	14.8054049031999						510	17	4	NaN	NaN	NaN	0.0022051	1	8199	62.969	45.573	1	259860			21866	614	18441	18969	21866	21866		
WEDAQITLLK	10	Unmodified	_WEDAQITLLK_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.832246	1215.64994	0.86603	0.00052726	-2.1742	-0.0013237	-1.3082	-0.00079648	608.830953680336	12.68	0.097521	12.68	12.635	12.733	0	567	40	0.944945209309785	0.0263209282177764	0.944945209309785	382.777207502981	0	10.6620482360516						288	12	4	NaN	NaN	NaN	0.00087166	1	9906	76.572	60.115	1	111380			21867	278	18442	18970	21867	21867		
WEESGPQFITNSEEVR	16	Unmodified	_WEESGPQFITNSEEVR_			0	0	0	Q13257	Q13257	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.442137	1906.86972	2.6116	0.0024926	-2.1368	-0.0020395	0.47479	0.00045316	954.94213418817	11.287	0.15964	11.287	11.216	11.376	0	270	58	1.14398322290989	0.0379522251090028	1.14398322290989	461.512613317665	0	15.3109156152859						596	19	4	NaN	NaN	NaN	7.5042E-05	1	29734	92.747	83.941	1	189120			21868	1647	18443	18971	21868	21868		
WEFPNFNSR	9	Unmodified	_WEFPNFNSR_			0	0	0	Q969Z0	Q969Z0	Q969Z0	TBRG4	Protein TBRG4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.777805	1195.54106	0.69208	0.0004144	-1.0842	-0.00064918	-0.3921	-0.00023478	598.777180849787	13.859	0.16846	13.859	13.77	13.939	0	621	46	0.908462957275599	0.0304334915876326	0.908462957275599	368.068493565794	0	12.3302874518955						494	20	4	NaN	NaN	NaN	4.1543E-05	1	9298	94.806	68.583	1	166560			21869	2466	18444	18972	21869	21869		
WEGNYLFPR	9	Unmodified	_WEGNYLFPR_			0	0	0	Q9BVI4	Q9BVI4	Q9BVI4	NOC4L	Nucleolar complex protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.290548	1180.56654	0.55701	0.00032935	1.1963	0.00070734	1.7533	0.0010367	591.291476309495	12.485	0.21279	12.485	12.396	12.609	0	603	43	0.920633820089869	0.0283868792767229	0.920633820089869	373.053547681954	0	11.502755808783						421	25	3	NaN	NaN	NaN	0.01941	1	8891	49.325	36.498	1	92195			21870	2764	18445	18973	21870	21870		
WELNPEIVAR	10	Unmodified	_WELNPEIVAR_			0	0	0	Q9BYD2	Q9BYD2	Q9BYD2	MRPL9	39S ribosomal protein L9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	613.830037	1225.64552	1.815	0.0011141	-2.7266	-0.0016736	-0.91155	-0.00055953	613.828549653702	12.866	0.14189	12.866	12.822	12.963	0	582	43	0.934820374997243	0.0283593603705795	0.934820374997243	378.641185214087	0	11.4867220589423						340	17	3	NaN	NaN	NaN	0.0062289	1	10171	46.447	28.044	1	97710			21871	2798	18446	18974	21871	21871		
WELNSGDGAFYGPK	14	Unmodified	_WELNSGDGAFYGPK_			0	0	0	P26639	P26639	P26639	TARS	Threonine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.85698	1539.69941	1.6614	0.0012807	0.63204	0.00048721	2.2934	0.0017679	770.857346909874	11.82	0.22171	11.82	11.74	11.961	0	435	61	1.03374239103424	0.0402342316744719	1.03374239103424	417.756204887649	0	16.259466649212						895	26	4	NaN	NaN	NaN	7.1278E-08	1	19707	138.71	118.48	1	565160			21872	857	18447	18975	21872	21872		
WEQGQADYMGADSFDNIK	18	Unmodified	_WEQGQADYMGADSFDNIK_			0	0	0	P46976	P46976	P46976	GYG1	Glycogenin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1037.94419	2073.87382	1.3239	0.0013741	0.49629	0.00051512	1.8202	0.0018893	1038.44547588841	12.263	0.088699	12.263	12.219	12.307	0	153	28	1.22165005014568	0.0178788550489832	1.22165005014568	492.558617303435	0	7.20859801122714						211	11	4	NaN	NaN	NaN	0.0024851	1	32916	65.212	64.777	1	43913			21873	1096	18448	18976	21873	21873		
WEQVPLIK	8	Unmodified	_WEQVPLIK_			0	0	0	P23919	P23919	P23919	DTYMK	Thymidylate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.794935	1011.57532	0.42535	0.00021557	0.6623	0.00033565	1.0877	0.00055122	506.795923637377	11.048	0.24831	11.048	10.915	11.163	0	663	52	0.880024865079826	0.0345775238845497	0.880024865079826	357.285466200905	0	14.0382928157872						648	29	3	NaN	NaN	NaN	0.0003884	1	4553	90.308	71.906	1	167140			21874	827	18449	18977	21874	21874		
WETFCTSSLGETNK	14	Unmodified	_WETFCTSSLGETNK_			0	0	0	Q5H9R7	Q5H9R7	Q5H9R7	PPP6R3	Serine/threonine-protein phosphatase 6 regulatory subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.369595	1658.72464	2.5081	0.0020827	4.1886	0.0034781	6.6968	0.0055608	830.375430373667	10.356	0.12413	10.356	10.303	10.427	0	378	37	1.07192009927972	0.0240773390598485	1.07192009927972	432.907460540067	0	9.72391479175093						206	15	3	NaN	NaN	NaN	0.0042536	1	23276	54.199	51.72	1	65698			21875	1962	18450	18978	21875	21875		
WEVIANYMNIHSSSGVK	17	Unmodified	_WEVIANYMNIHSSSGVK_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	967.975093	1933.93563	1.2552	0.001215	-0.29368	-0.00028427	0.96154	0.00093074	968.475797529792	12.201	0.053205	12.201	12.174	12.227	0	147	25	1.22562176648663	0.0158846877503602	1.22562176648663	494.397728542505	0	6.40764855612639						118	7	4	NaN	NaN	NaN	0.0041064	1	30403	33.456	29.951	1	17916			21876	2649	18451	18979	21876	21876		
WEVIANYMNIHSSSGVK	17	Unmodified	_WEVIANYMNIHSSSGVK_			0	0	0	Q99543	Q99543	Q99543	DNAJC2	DnaJ homolog subfamily C member 2;DnaJ homolog subfamily C member 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.652487	1933.93563	-0.026409	-1.7051E-05	0.95743	0.00061816	0.93102	0.00060111	645.987809427598	12.192	0.097572	12.192	12.165	12.263	0	627	25	0.90440375274676	0.0162390708699242	0.90440375274676	547.232650748677	0	9.82586568316958						127	12	2	NaN	NaN	NaN	0.0013131	1	30404	33.456	24.194	1	41182			21877	2649	18451	18979	21877	21877		
WEVLIGSSHILTPTR	15	Unmodified	_WEVLIGSSHILTPTR_			0	0	0	Q15833	Q15833	Q15833	STXBP2	Syntaxin-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.972679	1707.9308	1.7784	0.0015205	1.4238	0.0012173	3.2022	0.0027378	854.973948161871	13.478	0.13301	13.478	13.416	13.549	0	222	31	1.17589687683038	0.0199213775268092	1.17589687683038	474.786348202424	0	8.04356085425678						226	16	3	NaN	NaN	NaN	2.7277E-06	1	24710	84.102	72.084	1	56014			21878	1872	18452	18980	21878	21878		
WEWLVNQHR	9	Unmodified	_WEWLVNQHR_			0	0	0	Q9BWJ5	Q9BWJ5	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	423.215873	1266.62579	-1.3059	-0.00055268	-1.3771	-0.00058282	-2.683	-0.0011355	423.215358283956	10.055	0.1862	10.055	9.9928	10.179	0	843	31	0.757518876820989	0.0205030308233051	0.757518876820989	460.07022508522	0	12.4522758368651						388	22	4	NaN	NaN	NaN	0.023826	1	11408	40.203	36	1	138340			21879	2780	18453	18981	21879	21879		
WEYVPLGPFLGK	12	Unmodified	_WEYVPLGPFLGK_			0	0	0	P16930	P16930	P16930	FAH	Fumarylacetoacetase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.379363	1404.74417	0.75986	0.00053447	-1.6838	-0.0011844	-0.92397	-0.0006499	703.880065301354	17.823	0.23052	17.823	17.743	17.974	0	501	49	0.98941132619024	0.0322853553889811	0.98941132619024	400.183257842395	0	13.0583290873687						704	27	4	NaN	NaN	NaN	0.005661	1	15617	43.272	33.022	1	168570			21880	731	18454	18982	21880	21880		
WFCTGDIGEFHPDGCLQIIDR	21	Unmodified	_WFCTGDIGEFHPDGCLQIIDR_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	846.050981	2535.13111	0.34619	0.00029289	-0.4012	-0.00033944	-0.055012	-4.6543E-05	846.385236113944	16.236	0.070929	16.236	16.2	16.271	0	534	34	0.967195187796614	0.0222345870481429	0.967195187796614	584.237285045954	0	13.4308720049759						237	9	5	NaN	NaN	NaN	0.022585	1	36972	14.5	14.448	1	46080			21881	260	18455	18983	21881	21881		
WFDFPFTR	8	Unmodified	_WFDFPFTR_			0	0	0	Q5T4S7	Q5T4S7	Q5T4S7	UBR4	E3 ubiquitin-protein ligase UBR4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.269084	1114.52362	-0.50237	-0.00028046	-1.02	-0.00056942	-1.5223	-0.00084988	558.268455489211	17.53	0.12415	17.53	17.486	17.61	0	651	31	0.888155670855968	0.0203213763976985	0.888155670855968	360.139177322174	0	8.24013629375139						252	15	3	NaN	NaN	NaN	0.0088866	1	7105	53.878	42.229	1	64137			21882	1991	18456	18984	21882	21882		
WFEENASQSTVK	12	Unmodified	_WFEENASQSTVK_			0	0	0	Q12905	Q12905	Q12905	ILF2	Interleukin enhancer-binding factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.335881	1424.65721	2.0063	0.0014312	-0.073094	-5.2141E-05	1.9332	0.001379	713.335722786842	7.0747	0.2129	7.0747	7.0214	7.2343	0	471	52	1.00957851518677	0.0342676498063071	1.00957851518677	408.284550057231	0	13.8582108991281						759	25	5	NaN	NaN	NaN	1.5574E-07	1	16214	164.31	125.3	1	517310			21883	1605	18457	18985	21883	21883		
WFGFLEAQQAFQSVGTK	17	Unmodified	_WFGFLEAQQAFQSVGTK_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	972.48615	1942.95775	1.9337	0.0018805	-1.1791	-0.0011467	0.75461	0.00073385	972.986538207874	18.435	0.11533	18.435	18.373	18.488	0	201	73	1.18983705239708	0.0477916352586294	1.18983705239708	479.946827534496	0	19.2778025182982						679	14	5	NaN	NaN	NaN	4.9432E-10	1	30586	106.97	83.04	1	209380			21884	565	18458	18986	21884	21884		
WFHPNITGVEAENLLLTR	18	Unmodified	_WFHPNITGVEAENLLLTR_			0	0	0	Q06124	Q06124	Q06124	PTPN11	Tyrosine-protein phosphatase non-receptor type 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.040851	2109.10072	0.31299	0.00022036	-1.4735	-0.0010374	-1.1605	-0.00081707	704.374005697662	16.076	0.088673	16.076	16.041	16.129	0	609	49	0.916577990479294	0.0324646425332216	0.916577990479294	554.271038120575	0	19.6319476422215						378	11	4	NaN	NaN	NaN	2.294E-10	1	33463	88.796	84.946	1	105050			21885	1556	18459	18987	21885	21885		
WFLDALEK	8	Unmodified	_WFLDALEK_			0	0	0	Q13042	Q13042	Q13042	CDC16	Cell division cycle protein 16 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	511.271293	1020.52803	-0.96224	-0.00049197	-0.97179	-0.00049685	-1.934	-0.00098882	511.270794446932	15.686	0.12412	15.686	15.65	15.775	-1.7764E-15	681	46	0.867820189810857	0.0305350029488345	0.867820189810857	352.288955753445	0	12.3955911939751						253	15	2	NaN	NaN	NaN	0.0097287	1	4751	65.313	25.11	1	85745			21886	1619	18460	18988	21886	21886		
WFNGQPIHAELSPVTDFR	18	Unmodified	_WFNGQPIHAELSPVTDFR_			0	0	0	Q01081	Q01081	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	705.353318	2113.03812	0.1416	9.9876E-05	-1.4108	-0.00099509	-1.2692	-0.00089521	705.686695591468	14.099	0.097531	14.099	14.063	14.161	0	645	40	0.892219381832517	0.0264159589549013	0.892219381832517	539.53438276365	0	15.9740063935508						221	12	2	NaN	NaN	NaN	0.00018255	1	33511	67.887	66.944	1	122670			21887	1510	18461	18989	21887	21887		
WFVLDAETR	9	Unmodified	_WFVLDAETR_			0	0	0	Q9HC35	Q9HC35	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.790381	1135.56621	-0.088237	-5.0189E-05	-0.86917	-0.00049438	-0.95741	-0.00054457	568.790161446626	17.344	0.34583	17.344	17.22	17.566	0	648	76	0.890187667287968	0.0508069975986111	0.890187667287968	360.881412744309	0	20.5971187250252						1554	40	4	NaN	NaN	NaN	0.0077494	1	7681	67.903	46.628	1	1136100			21888	2956	18462	18990	21888	21888		
WFVLDAETR	9	Unmodified	_WFVLDAETR_			0	0	0	Q9HC35	Q9HC35	Q9HC35	EML4	Echinoderm microtubule-associated protein-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.790381	1135.56621	0.63572	0.00036159	3.1281	0.0017792	3.7638	0.0021408	568.791819587407	13.407	0.14189	13.407	13.38	13.522	0	555	64	0.953040030838688	0.0425125486397032	0.953040030838688	386.361695234681	0	17.2345545094556						218	17	2	NaN	NaN	NaN	0.0065422	1	7684	58.426	46.359	1	38481			21889	2956	18462	18990	21889	21889		
WFWLLPVK	8	Unmodified	_WFWLLPVK_			0	0	0	Q9H583	Q9H583	Q9H583	HEATR1	HEAT repeat-containing protein 1;HEAT repeat-containing protein 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	544.818213	1087.62187	-0.80312	-0.00043755	1.7675	0.00096299	0.96442	0.00052544	544.819438930545	19.499	0.062048	19.499	19.472	19.534	0	663	31	0.880024865079826	0.0203270164952024	0.880024865079826	356.949993769088	0	8.24491295555441						95	8	2	NaN	NaN	NaN	0.019376	1	6419	51.456	31.969	1	18492			21890	2900	18463	18991	21890	21890		
WGDAGAEYVVESTGVFTTMEK	21	Unmodified	_WGDAGAEYVVESTGVFTTMEK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.684181	2276.03071	0.73787	0.00056055	1.6261	0.0012353	2.3639	0.0017958	760.020016653873	17.255	0.36357	17.255	17.193	17.557	0	459	55	1.01763759082241	0.0362608440937691	1.01763759082241	615.088497006474	0	21.9170638889212						1480	42	7	NaN	NaN	NaN	7.4554E-08	1	35425	146.34	124.67	1	1310000			21891	513	18464	18992	21891	21891		
WGDAGAEYVVESTGVFTTMEK	21	Unmodified	_WGDAGAEYVVESTGVFTTMEK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1139.02263	2276.03071	0.97701	0.0011128	1.4259	0.0016241	2.4029	0.002737	1139.52603481429	17.255	0.71825	17.255	17.158	17.876	0	114	157	1.24744674793813	0.103151739314025	1.24744674793813	502.662383881946	0	41.5653006998967						6288	82	7	NaN	NaN	NaN	1.2536E-47	1	35426	280.5	246.97	1	6160100			21892	513	18464	18992	21892	21892		
WGDAGAEYVVESTGVFTTMEK	21	Unmodified	_WGDAGAEYVVESTGVFTTMEK_			0	0	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1139.02263	2276.03071	0.89127	0.0010152	2.8764	0.0032763	3.7677	0.0042915	1139.0245733701	15.819	0.097541	15.819	15.783	15.881	0	117	58	1.24546401832526	0.0376615550764219	1.24546401832526	501.863432655315	0	15.175835697932						340	12	4	NaN	NaN	NaN	0.026537	1	35428	25.922	25.224	1	74307			21893	513	18464	18992	21893	21893		
WGDAGAEYVVESTGVFTTMEK	21	Oxidation (M)	_WGDAGAEYVVESTGVFTTM(Oxidation (M))EK_	WGDAGAEYVVESTGVFTTM(1)EK	WGDAGAEYVVESTGVFTTM(110)EK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	765.015819	2292.02563	1.9493	0.0014913	-1.3797	-0.0010555	0.5696	0.00043575	765.349170994206	15.5	0.23065	15.5	15.455	15.686	0	438	43	1.03173026378327	0.0281756225975058	1.03173026378327	623.580125562256	0	17.0294105871437						798	27	6	NaN	NaN	NaN	9.0313E-08	1	35581	108.34	107.07	1	329900			21894	513	18464	18993	21894	21894	97	
WGDAGAEYVVESTGVFTTMEK	21	Oxidation (M)	_WGDAGAEYVVESTGVFTTM(Oxidation (M))EK_	WGDAGAEYVVESTGVFTTM(1)EK	WGDAGAEYVVESTGVFTTM(100)EK	0	1	0	P04406	P04406	P04406	GAPDH	Glyceraldehyde-3-phosphate dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1147.02009	2292.02563	1.8106	0.0020767	0.27181	0.00031177	2.0824	0.0023885	1147.52209550693	15.491	0.33708	15.491	15.446	15.783	0	129	115	1.23753038177212	0.0753800056452807	1.23753038177212	498.645439456654	0	30.373311714102						2052	39	6	NaN	NaN	NaN	2.0069E-15	1	35582	102.55	98.701	1	879900			21895	513	18464	18993	21895	21895	97	
WGDEVEYMLVSFDHENK	17	Unmodified	_WGDEVEYMLVSFDHENK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	699.978929	2096.91496	-0.37148	-0.00026003	0.64403	0.00045081	0.27256	0.00019078	700.313810610339	17.309	0.079795	17.309	17.264	17.344	0	567	28	0.944945209309785	0.0182196558414446	0.944945209309785	571.446894353306	0	11.0181687194165						218	10	5	NaN	NaN	NaN	9.3632E-05	1	33265	66.485	61.669	1	53403			21896	1108	18465	18994	21896	21896		
WGDYDSHDIER	11	Unmodified	_WGDYDSHDIER_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	464.865346	1391.57421	-1.0524	-0.00048921	-0.4208	-0.00019562	-1.4732	-0.00068483	464.865005147264	5.9396	0.12417	5.9396	5.9041	6.0283	0	807	28	0.782101955086014	0.018420624064141	0.782101955086014	474.540884933612	0	11.1767259851248						247	15	4	NaN	NaN	NaN	0.008644	1	15179	65.933	64.43	1	75751			21897	2064	18466	18995	21897	21897		
WGDYDSHDIER	11	Unmodified	_WGDYDSHDIER_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	696.79438	1391.57421	1.8358	0.0012791	1.3557	0.00094461	3.1914	0.0022238	696.795650421235	5.9396	0.08874	5.9396	5.913	6.0017	0	492	76	0.995464410099171	0.0504633304940764	0.995464410099171	402.668656751	0	20.4125846178741						448	11	3	NaN	NaN	NaN	0.008086	1	15180	35.33	33.956	1	116750			21898	2064	18466	18995	21898	21898		
WGEDNHWICK	10	Unmodified	_WGEDNHWICK_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	448.864511	1343.5717	-1.2295	-0.00055187	0.82304	0.00036943	-0.40645	-0.00018244	449.200157821906	7.5447	0.14187	7.5447	7.4826	7.6245	0	822	25	0.771863999559055	0.0163864344755192	0.771863999559055	468.493336124106	0	9.9459689258739						196	17	3	NaN	NaN	NaN	0.010005	1	13701	43.734	31.667	1	42365			21899	1733	18467	18996	21899	21899		
WGEEEAELNK	10	Unmodified	_WGEEEAELNK_			0	0	0	P49589	P49589	P49589	CARS	Cysteine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.777667	1203.54078	0.75534	0.0004553	3.4307	0.0020679	4.186	0.0025232	602.779639404434	6.2944	0.10643	6.2944	6.2589	6.3653	0	603	31	0.920633820089869	0.0202791503902223	0.920633820089869	372.971274248925	0	8.21557974156161						184	13	3	NaN	NaN	NaN	0.00064025	1	9564	74.269	55.932	1	63755			21900	1137	18468	18997	21900	21900		
WGEEHIPGSPFHVTVP	16	Unmodified	_WGEEHIPGSPFHVTVP_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	596.96165	1787.86312	-1.2857	-0.00076751	-0.78649	-0.00046951	-2.0722	-0.001237	596.961179845779	13.974	0.24827	13.974	13.903	14.152	0	756	43	0.816857749704129	0.0285885886986983	0.816857749704129	494.547989402365	0	17.3083123296724						728	29	4	NaN	NaN	NaN	0.018704	1	26920	53.028	43.766	1	236070			21901	326	18469	18998	21901	21901		
WGEPEPFLR	9	Unmodified	_WGEPEPFLR_			0	0	0	P28340	P28340	P28340	POLD1	DNA polymerase delta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.785099	1129.55564	-0.17577	-9.945E-05	1.0351	0.00058562	0.85929	0.00048617	565.785546549626	11.704	0.1064	11.704	11.642	11.749	0	645	85	0.892219381832517	0.0569156930371308	0.892219381832517	361.72814675552	0	23.075051475952						368	13	2	NaN	NaN	NaN	0.0015069	1	7511	79.809	40.485	1	73611			21902	878	18470	18999	21902	21902		
WGLGGTCVNVGCIPK	15	Unmodified	_WGLGGTCVNVGCIPK_			0	0	0	Q16881;Q9NNW7	Q16881;Q9NNW7	Q16881	TXNRD1;TXNRD2	Thioredoxin reductase 1, cytoplasmic;Thioredoxin reductase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.397435	1616.78032	2.4386	0.0019738	-0.68411	-0.00055371	1.7545	0.0014201	809.397425667226	13.283	0.21287	13.283	13.185	13.398	0	366	76	1.07994477139643	0.0501715264263143	1.07994477139643	436.242057237958	0	20.2667122270364						1019	25	3	NaN	NaN	NaN	3.9168E-12	1	22100	184.27	169.81	1	837150			21903	1914;2974	18471	19000	21903	21903		
WGSNELPAEEGK	12	Unmodified	_WGSNELPAEEGK_			0	0	0	P16615	P16615	P16615	ATP2A2	Sarcoplasmic/endoplasmic reticulum calcium ATPase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	658.809499	1315.60444	1.491	0.00098229	0.44415	0.00029261	1.9352	0.0012749	658.809569595161	6.7023	0.2394	6.7023	6.6313	6.8707	0	567	58	0.944945209309785	0.03846905778735	0.944945209309785	382.450552890187	0	15.5696989359659						699	28	4	NaN	NaN	NaN	0.0046581	1	12822	71.896	62.382	1	257770			21904	730	18472	19001	21904	21904		
WGTDEAQFIYILGNR	15	Unmodified	_WGTDEAQFIYILGNR_			0	0	0	P08133	P08133	P08133	ANXA6	Annexin A6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.944118	1781.87368	1.8291	0.0016315	0.28757	0.0002565	2.1167	0.001888	891.942208737659	17.663	0.17733	17.663	17.557	17.734	0	324	64	1.1079963157843	0.0420107430674173	1.1079963157843	447.220988593717	0	16.9568127425296						550	21	4	NaN	NaN	NaN	0.00013866	1	26723	68.548	63.161	1	124980			21905	573	18473	19002	21905	21905		
WGTDEEK	7	Unmodified	_WGTDEEK_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	432.690333	863.366112	-0.6435	-0.00027844	2.7043	0.0011701	2.0608	0.0008917	432.69144753782	2.6941	0.23939	2.6941	2.6676	2.907	0	804	25	0.78414869089473	0.0163727478201636	0.78414869089473	319.092587139369	0	6.66254056300892						296	28	3	NaN	NaN	NaN	0.059248	1	1764	33.813	20.165	1	70935			21906	591	18474	19003	21906	21906		
WGTFSNLWEHNQAIIK	16	Unmodified	_WGTFSNLWEHNQAIIK_			0	0	0	P42892	P42892	P42892	ECE1	Endothelin-converting enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	648.663604	1942.96898	-0.17734	-0.00011504	-1.2445	-0.00080727	-1.4218	-0.0009223	648.997259069562	14.409	0.070942	14.409	14.382	14.453	0	675	22	0.871889544407995	0.0142397763386857	0.871889544407995	527.541647766238	0	8.61585635670576						146	9	3	NaN	NaN	NaN	0.0001487	1	30589	46.358	43.969	1	39159			21907	1059	18475	19004	21907	21907		
WGTIEVENTTHCEFAYLR	18	Unmodified	_WGTIEVENTTHCEFAYLR_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	742.680994	2225.02115	0.28764	0.00021362	1.1578	0.00085991	1.4455	0.0010735	743.016366312995	13.327	0.088694	13.327	13.292	13.38	0	552	28	0.955063035883597	0.0182045269808345	0.955063035883597	577.346927571959	0	11.004852376641						194	11	4	NaN	NaN	NaN	3.5786E-05	1	34938	66.485	52.627	1	36602			21908	3215	18476	19005	21908	21908		
WGTLTDCVVMR	11	Unmodified	_WGTLTDCVVMR_			0	0	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.320665	1336.62678	0.77994	0.00052203	1.53	0.001024	2.3099	0.0015461	669.322680155067	11.864	0.28378	11.864	11.766	12.05	-1.7764E-15	513	46	0.981336640919867	0.0302863591438532	0.981336640919867	397.114433040266	0	12.2558863480236						784	33	6	NaN	NaN	NaN	1.5533E-05	1	13487	131.22	122.75	1	833440			21909	1204	18477	19006	21909	21909		
WGTLTDCVVMR	11	Oxidation (M)	_WGTLTDCVVM(Oxidation (M))R_	WGTLTDCVVM(1)R	WGTLTDCVVM(70)R	0	1	0	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	677.318122	1352.62169	2.095	0.001419	-1.1612	-0.00078649	0.93382	0.00063249	677.318031711208	9.842	0.20393	9.842	9.7534	9.9573	0	513	37	0.981336640919867	0.0242341119852805	0.981336640919867	397.066384552692	0	9.80555583843335						612	24	5	NaN	NaN	NaN	0.0017853	1	13954	69.915	60.938	1	282000			21910	1204	18477	19007	21910	21910	433	
WGTLTDCVVMRDPQTK	16	Unmodified	_WGTLTDCVVMRDPQTK_			0	0	1	P51991	P51991	P51991	HNRNPA3	Heterogeneous nuclear ribonucleoprotein A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.309844	1905.9077	-0.31585	-0.00020098	-0.44535	-0.00028338	-0.7612	-0.00048436	636.309855449539	10.223	0.08868	10.223	10.188	10.277	0	696	25	0.857641857947968	0.0162909868365219	0.857641857947968	518.99248326546	0	9.8583104763112						216	11	4	NaN	NaN	NaN	0.0021653	1	29713	77.157	68.783	1	48291			21911	1204	18478	19008	21911	21911		
WGTPVPLEGFEDK	13	Unmodified	_WGTPVPLEGFEDK_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	737.864274	1473.714	1.4279	0.0010536	1.2919	0.00095328	2.7198	0.0020069	737.863929935328	14.285	0.30145	14.285	14.169	14.471	0	459	49	1.01763759082241	0.0322318588026405	1.01763759082241	411.411974523603	0	13.0307417809161						669	35	3	NaN	NaN	NaN	2.8726E-05	1	17700	71.066	52.559	1	281390			21912	1284	18479	19009	21912	21912		
WGVISASVDDR	11	Unmodified	_WGVISASVDDR_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.801477	1203.5884	0.73512	0.00044313	2.9855	0.0017997	3.7207	0.0022428	602.802756016078	9.975	0.27488	9.975	9.8952	10.17	0	606	55	0.918606045818476	0.0364923641742785	0.918606045818476	372.149608281229	0	14.7839425774881						577	31	3	NaN	NaN	NaN	0.0066456	1	9569	50.297	34.715	1	146800			21913	1108	18480	19010	21913	21913		
WHEEVEIYR	9	Unmodified	_WHEEVEIYR_			0	0	0	CON__P15497	CON__P15497	CON__P15497			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.80402	1259.59349	1.0001	0.00063086	2.7797	0.0017534	3.7798	0.0023843	630.805663209131	7.0836	0.16855	7.0836	7.0037	7.1723	0	555	31	0.953040030838688	0.0202314531592178	0.953040030838688	385.904997003344	0	8.19212060159799						253	20	3	NaN	NaN	NaN	0.005111	1	11192	51.864	43.101	1	55491		+	21914	30	18481	19011	21914	21914		
WHFYDTVK	8	Unmodified	_WHFYDTVK_			0	0	0	P31040	P31040	P31040	SDHA	Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.266542	1094.51853	1.1565	0.00063407	0.072582	3.9794E-05	1.2291	0.00067386	548.266469643647	8.2632	0.20407	8.2632	8.2188	8.4229	0	609	34	0.916577990479294	0.0223086119453004	0.916577990479294	371.747138681709	0	9.04796181532731						414	24	4	NaN	NaN	NaN	0.016231	1	6565	53.878	39.116	1	165640			21915	919	18482	19012	21915	21915		
WHLEQQQAIQTTEAEK	16	Unmodified	_WHLEQQQAIQTTEAEK_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	647.321795	1938.94355	0.30138	0.00019509	-0.058775	-3.8046E-05	0.24261	0.00015704	647.65596220315	7.2698	0.079849	7.2698	7.2432	7.3231	0	705	25	0.851531465363931	0.0162977768340994	0.851531465363931	515.231451723552	0	9.86120602661549						152	10	4	NaN	NaN	NaN	4.9818E-05	1	30484	78.864	72.659	1	32866			21916	3209	18483	19013	21916	21916		
WHLEQQQAIQTTEAEK	16	Unmodified	_WHLEQQQAIQTTEAEK_			0	0	0	Q9UH65	Q9UH65	Q9UH65	SWAP70	Switch-associated protein 70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	970.479054	1938.94355	2.7443	0.0026633	-1.9719	-0.0019137	0.77235	0.00074955	970.978681060282	7.2698	0.070935	7.2698	7.2432	7.3142	0	243	28	1.16194328902838	0.0179526604527893	1.16194328902838	468.702151447568	0	7.24170504523175						162	9	3	NaN	NaN	NaN	0.00014297	1	30485	72.327	64.362	1	32952			21917	3209	18483	19013	21917	21917		
WIDFDNDYK	9	Unmodified	_WIDFDNDYK_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.269478	1214.5244	0.80489	0.00048959	0.22761	0.00013845	1.0325	0.00062804	608.269473871974	11.465	0.19517	11.465	11.394	11.589	0	576	46	0.938871150116794	0.0303787174867894	0.938871150116794	380.320681487379	0	12.3059000543909						437	23	4	NaN	NaN	NaN	0.0011344	1	9848	84.368	82	1	155900			21918	1036	18484	19014	21918	21918		
WIDLTMEDIR	10	Unmodified	_WIDLTMEDIR_			0	0	0	P48739	P48739	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	646.321188	1290.62782	0.74805	0.00048348	0.55981	0.00036182	1.3079	0.0008453	646.321598213181	15.101	0.097547	15.101	15.065	15.163	0	513	31	0.981336640919867	0.0201922993273106	0.981336640919867	397.259241752961	0	8.17413432407568						156	12	2	NaN	NaN	NaN	0.0078408	1	12087	49.16	32.508	1	46591			21919	1118	18485	19015	21919	21919		
WIDLTMEDIRR	11	Unmodified	_WIDLTMEDIRR_			0	0	1	P48739	P48739	P48739	PITPNB	Phosphatidylinositol transfer protein beta isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.250254	1446.72893	-1.3779	-0.00066589	-0.66616	-0.00032192	-2.0441	-0.00098781	483.249913991977	12.644	0.079787	12.644	12.6	12.68	0	759	25	0.814815566123307	0.0163363337922245	0.814815566123307	494.204670301907	0	9.90836796864346						155	10	4	NaN	NaN	NaN	0.015169	1	16888	34.953	22.357	1	34197			21920	1118	18486	19016	21920	21920		
WIDNPTVDDR	10	Unmodified	_WIDNPTVDDR_			0	0	0	P18206	P18206	P18206	VCL	Vinculin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.791109	1229.56767	1.5212	0.00093677	1.5199	0.00093597	3.0412	0.0018727	615.790739129542	7.4383	0.266	7.4383	7.3319	7.5979	0	594	31	0.926715457081489	0.0202707209833614	0.926715457081489	375.345003760301	0	8.21019417080339						404	31	3	NaN	NaN	NaN	4.412E-05	1	10286	100.84	70.274	1	262680			21921	753	18487	19017	21921	21921		
WIEQWIK	7	Unmodified	_WIEQWIK_			0	0	0	Q9Y3D8	Q9Y3D8	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	501.774003	1001.53345	-1.0701	-0.00053692	-0.73411	-0.00036836	-1.8042	-0.00090528	501.773656872402	13.389	0.15078	13.389	13.318	13.469	0	723	40	0.839303037468863	0.0265078208425806	0.839303037468863	340.798472750317	0	10.7634840525948						291	18	3	NaN	NaN	NaN	0.012105	1	4324	58.286	38.052	1	90676			21922	3390	18488	19018	21922	21922		
WIGLDLSNGK	10	Unmodified	_WIGLDLSNGK_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.798206	1101.58186	0.16188	8.9325E-05	0.63261	0.00034907	0.79449	0.0004384	551.798605709742	12.644	0.18624	12.644	12.618	12.804	0	651	40	0.888155670855968	0.0264122944165538	0.888155670855968	360.190850020283	0	10.7114857102874						327	22	3	NaN	NaN	NaN	3.9634E-05	1	6761	114.64	85.537	1	122300			21923	747	18489	19019	21923	21923		
WIHALEETILR	11	Unmodified	_WIHALEETILR_			0	0	0	Q96SU4	Q96SU4	Q96SU4	OSBPL9	Oxysterol-binding protein-related protein 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.925988	1379.75613	-2.1857	-0.0010074	0.1575	7.2595E-05	-2.0282	-0.00093484	460.926161561363	13.371	0.062099	13.371	13.345	13.407	0	813	25	0.778007628350577	0.0163795890035051	0.778007628350577	472.096367752562	0	9.93916279487956						94	8	2	NaN	NaN	NaN	0.0071658	1	14824	48.157	42.662	1	25389			21924	2625	18490	19020	21924	21924		
WILENDPTELDLR	13	Unmodified	_WILENDPTELDLR_			0	0	0	P46934	P46934	P46934	NEDD4	E3 ubiquitin-protein ligase NEDD4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.41212	1612.80969	1.9013	0.0015351	6.64	0.0053612	8.5412	0.0068963	807.92004326203	15.402	0.0888	15.402	15.375	15.464	0	366	34	1.07994477139643	0.0220632885593353	1.07994477139643	436.251153262488	0	8.91261787982654						213	11	3	NaN	NaN	NaN	0.00037285	1	21979	60	50.257	1	68849			21925	1093	18491	19021	21925	21925		
WILSIGLK	8	Unmodified	_WILSIGLK_			0	0	0	Q13136	Q13136	Q13136	PPFIA1	Liprin-alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	465.294571	928.574589	-1.9255	-0.00089594	-0.8179	-0.00038056	-2.7434	-0.0012765	465.294076964252	15.739	0.079813	15.739	15.712	15.792	1.7764E-15	744	22	0.82502364452135	0.0142853496956143	0.82502364452135	335.356765535754	0	5.80672893471768						81	10	2	NaN	NaN	NaN	0.055878	1	2858	38.322	23.787	1	17773			21926	1632	18492	19022	21926	21926		
WISIMTER	8	Unmodified	_WISIMTER_			0	0	0	P07355;A6NMY6	P07355	P07355	ANXA2;ANXA2P2	Annexin A2;Putative annexin A2-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	518.268227	1034.5219	0.90804	0.00047061	-0.73211	-0.00037943	0.17594	9.1182E-05	518.268254163765	11.332	0.28383	11.332	11.243	11.527	0	684	67	0.86578508874114	0.0447753579488978	0.86578508874114	351.399542908335	0	18.1731477261606						1021	33	4	NaN	NaN	NaN	0.0018708	1	5107	89.123	59.813	1	1034600			21927	558	18493	19023	21927	21927		
WISLTNFISEATVEK	15	Unmodified	_WISLTNFISEATVEK_			0	0	0	Q9Y312	Q9Y312	Q9Y312	AAR2	Protein AAR2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.456527	1736.8985	1.3106	0.0011395	-1.2021	-0.0010452	0.10847	9.4312E-05	869.454942755112	18.993	0.08866	18.993	18.958	19.046	0	309	25	1.11800162319566	0.0160007812851948	1.11800162319566	451.349655146918	0	6.45969287102724						220	11	4	NaN	NaN	NaN	1.8199E-08	1	25524	126.21	114.73	1	61813			21928	3362	18494	19024	21928	21928		
WISSGEYIQMSGR	13	Unmodified	_WISSGEYIQMSGR_			0	0	0	P42285	P42285	P42285	SKIV2L2	Superkiller viralicidic activity 2-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.358833	1512.70311	1.6947	0.0012835	-3.9626	-0.0030011	-2.2679	-0.0017176	757.354335967835	10.817	0.28373	10.817	10.622	10.906	0	453	25	1.02166545906632	0.016107024389808	1.02166545906632	412.941344796724	0	6.51020963190774						299	33	4	NaN	NaN	NaN	0.0034449	1	18878	67.548	59.991	1	62906			21929	1047	18495	19025	21929	21929		
WITEEQPNSATNLR	14	Unmodified	_WITEEQPNSATNLR_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	829.910276	1657.806	2.4196	0.0020081	-2.5787	-0.0021401	-0.1591	-0.00013204	830.412042374988	8.4672	0.15075	8.4672	8.4051	8.5559	0	390	31	1.06389100039157	0.0200755173877298	1.06389100039157	429.666811573542	0	8.10777000980403						285	18	3	NaN	NaN	NaN	0.0033743	1	23260	50.09	46.107	1	60934			21930	2401	18496	19026	21930	21930		
WITPAFQIHK	10	Unmodified	_WITPAFQIHK_			0	0	0	Q9UNI6	Q9UNI6	Q9UNI6	DUSP12	Dual specificity protein phosphatase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.232752	1239.67643	-1.6237	-0.00067259	-0.28707	-0.00011891	-1.9108	-0.0007915	414.232673783776	10.959	0.13304	10.959	10.888	11.021	0	813	22	0.778007628350577	0.0143311421844247	0.778007628350577	472.624414355117	0	8.70588852234425						166	16	3	NaN	NaN	NaN	0.062068	1	10615	22.386	18.778	1	34725			21931	3297	18497	19027	21931	21931		
WIVNLIR	7	Unmodified	_WIVNLIR_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.284537	912.554522	-1.1431	-0.00052272	-1.9552	-0.00089408	-3.0983	-0.0014168	457.283701593837	14.506	0.1596	14.506	14.471	14.631	0	762	49	0.812773098473386	0.0326681314822594	0.812773098473386	330.461699337956	0	13.282386270043						431	19	4	NaN	NaN	NaN	0.023259	1	2555	63.443	35.128	1	196210			21932	1304	18498	19028	21932	21932		
WIVSQMYK	8	Unmodified	_WIVSQMYK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.773145	1053.53174	0.29926	0.00015794	0.53863	0.00028427	0.83789	0.00044221	527.77286527939	10.392	0.17733	10.392	10.285	10.463	0	675	43	0.871889544407995	0.0284775811147984	0.871889544407995	353.793312193049	0	11.5555666545946						316	21	3	NaN	NaN	NaN	0.060751	1	5556	20.659	11.265	1	82812			21933	1784	18499	19029	21933	21933		
WIYEDVER	8	Unmodified	_WIYEDVER_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.266739	1108.51892	0.68638	0.00038113	1.6145	0.00089646	2.3008	0.0012776	555.267531856303	9.2125	0.10641	9.2125	9.177	9.2834	0	606	43	0.918606045818476	0.0283986853568062	0.918606045818476	372.511166377185	0	11.5161743752915						267	13	3	NaN	NaN	NaN	0.0078814	1	6939	56.014	35.781	1	76949			21934	241	18500	19030	21934	21934		
WKPPMIDNPSYQGIWK	16	Unmodified	_WKPPMIDNPSYQGIWK_			0	0	1	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	653.997706	1958.97129	-0.78896	-0.00051598	-2.072	-0.0013551	-2.8609	-0.001871	654.330781193193	13.841	0.23054	13.841	13.682	13.912	0	780	100	0.800512323802183	0.0673640356348794	0.800512323802183	484.326432155004	0	40.756628054943						1541	27	5	NaN	NaN	NaN	5.3971E-12	1	30885	140.57	126.21	1	452590			21935	870	18501	19031	21935	21935		
WLAGDVPAAR	10	Unmodified	_WLAGDVPAAR_			0	0	0	O94906	O94906	O94906	PRPF6	Pre-mRNA-processing factor 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.285266	1054.55598	0.50008	0.00026418	-0.25668	-0.0001356	0.2434	0.00012859	528.284752449813	8.3076	0.17744	8.3076	8.2277	8.4051	0	660	58	0.882057989648486	0.0386401075458892	0.882057989648486	357.914958813881	0	15.6790966842921						442	21	3	NaN	NaN	NaN	0.020391	1	5582	48.157	36.797	1	87358			21936	396	18502	19032	21936	21936		
WLAIDANAR	9	Unmodified	_WLAIDANAR_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.277441	1028.54033	0.39137	0.00020166	0.65257	0.00033625	1.0439	0.00053792	515.277967545346	9.4253	0.25712	9.4253	9.3721	9.6292	0	630	52	0.902373728295776	0.0345200008308083	0.902373728295776	366.277877759434	0	14.0118359478857						683	30	5	NaN	NaN	NaN	6.9672E-05	1	4954	130	97.873	1	307370			21937	1780	18503	19033	21937	21937		
WLAPDGLIFPDR	12	Unmodified	_WLAPDGLIFPDR_			0	0	0	Q99873	Q99873	Q99873	PRMT1	Protein arginine N-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.372069	1398.72959	0.36228	0.00025373	-0.73629	-0.00051568	-0.37401	-0.00026195	700.371866051468	16.706	0.27488	16.706	16.599	16.874	0	489	70	0.997481546940468	0.0464134218863773	0.997481546940468	403.464295490759	0	18.7734385865488						1352	32	5	NaN	NaN	NaN	0.00063205	1	15415	92.445	71.17	1	956420			21938	2681	18504	19034	21938	21938		
WLAVDYENVRPDIVLLGK	18	Unmodified	_WLAVDYENVRPDIVLLGK_			0	0	1	P04181	P04181	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.721118	2099.14153	-0.39847	-0.00027922	-0.0069771	-4.889E-06	-0.40545	-0.00028411	701.055386461969	17.06	0.11528	17.06	17.007	17.122	0	564	43	0.946969335010767	0.0283397285014204	0.946969335010767	572.666975589594	0	17.1380698507561						336	14	4	NaN	NaN	NaN	0.0035276	1	33303	27.357	27.078	1	77002			21939	510	18505	19035	21939	21939		
WLCPLSGK	8	Unmodified	_WLCPLSGK_			0	0	0	Q9BXP5	Q9BXP5	Q9BXP5	SRRT	Serrate RNA effector molecule homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.752213	959.489873	-1.1642	-0.00055969	-0.60372	-0.00029024	-1.7679	-0.00084993	480.752152034411	9.5051	0.20394	9.5051	9.4342	9.6381	0	768	67	0.808687310729125	0.0449124468991428	0.808687310729125	328.561879159583	0	18.2474953607626						528	24	3	NaN	NaN	NaN	0.0067336	1	3427	58.286	28.976	1	144270			21940	2786	18506	19036	21940	21940		
WLCTGDIGEFEPDGCLK	17	Unmodified	_WLCTGDIGEFEPDGCLK_			0	0	0	O95573	O95573	O95573	ACSL3	Long-chain-fatty-acid--CoA ligase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	998.942601	1995.87065	1.6927	0.0016909	1.9039	0.0019019	3.5966	0.0035928	999.445781837045	15.109	0.13303	15.109	15.056	15.189	-1.7764E-15	237	49	1.16593139812432	0.0318961142140304	1.16593139812432	470.215513686994	0	12.8635764967796						611	16	5	NaN	NaN	NaN	1.9712E-10	1	31554	112.73	107.91	1	142290			21941	443	18507	19037	21941	21941		
WLDESDAEMELR	12	Unmodified	_WLDESDAEMELR_			0	0	0	Q9P035	Q9P035	Q9P035	HACD3	Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	747.332481	1492.65041	0.82978	0.00062012	3.8928	0.0029092	4.7226	0.0035294	747.334690075692	12.272	0.12416	12.272	12.201	12.325	0	462	34	1.01562323939346	0.0221578688893902	1.01562323939346	410.549142685497	0	8.95695738678592						192	15	3	NaN	NaN	NaN	0.00039642	1	18312	64.906	55.929	1	60367			21942	3143	18508	19038	21942	21942		
WLFSTNHK	8	Unmodified	_WLFSTNHK_			0	0	0	P00395	P00395	P00395	MT-CO1	Cytochrome c oxidase subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	516.766709	1031.51886	0.98648	0.00050978	2.2751	0.0011757	3.2615	0.0016855	516.767454630982	7.4383	0.23938	7.4383	7.3762	7.6156	0	648	31	0.890187667287968	0.0203185572291886	0.890187667287968	361.31770996368	0	8.24708635897287						324	28	3	NaN	NaN	NaN	0.0018737	1	5035	93.561	16.727	1	135570			21943	476	18509	19039	21943	21943		
WLGLEEACQLAQFK	14	Unmodified	_WLGLEEACQLAQFK_			0	0	0	P50583	P50583	P50583	NUDT2	Bis(5-nucleosyl)-tetraphosphatase [asymmetrical]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.92434	1691.83413	1.0527	0.00089159	7.5779	0.0064179	8.6306	0.0073095	846.932824297218	17.043	0.52319	17.043	16.892	17.415	0	324	97	1.1079963157843	0.0640825595075936	1.1079963157843	447.404697443774	0	25.876293756106						883	54	4	NaN	NaN	NaN	1.3795E-05	1	24255	83.775	72.095	1	269670			21944	1169	18510	19040	21944	21944		
WLGVLLPK	8	Unmodified	_WLGVLLPK_			0	0	0	P16278	P16278	P16278	GLB1	Beta-galactosidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.297114	924.579674	-1.3676	-0.00063361	-1.1402	-0.00052826	-2.5078	-0.0011619	463.296508170281	14.666	0.13301	14.666	14.613	14.746	0	738	55	0.829104889055312	0.03670569405154	0.829104889055312	337.036947216197	0	14.9211218410237						403	16	3	NaN	NaN	NaN	0.019376	1	2790	51.456	30.798	1	140250			21945	725	18511	19041	21945	21945		
WLHEINQNCDDVCR	14	Unmodified	_WLHEINQNCDDVCR_			0	0	0	Q15286	Q15286	Q15286	RAB35	Ras-related protein Rab-35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	620.27016	1857.78865	0.22015	0.00013655	0.06158	3.8196E-05	0.28173	0.00017475	620.270352236071	6.6491	0.088688	6.6491	6.6225	6.7111	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	515.391194314508	0	12.3303297845953						221	11	4	NaN	NaN	NaN	4.8863E-06	1	28639	96.946	93.21	1	59725			21946	1828	18512	19042	21946	21946		
WLHEINQNCDDVCR	14	Unmodified	_WLHEINQNCDDVCR_			0	0	0	Q15286	Q15286	Q15286	RAB35	Ras-related protein Rab-35	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	929.901602	1857.78865	2.1938	0.0020401	-1.8224	-0.0016947	0.37144	0.00034541	929.900234579212	6.658	0.070962	6.658	6.6225	6.6934	0	318	31	1.11199926528787	0.0200119941897818	1.11199926528787	448.695057106992	0	8.07490000767626						184	9	4	NaN	NaN	NaN	0.0011902	1	28640	35.845	34.135	1	34410			21947	1828	18512	19042	21947	21947		
WLHGLESQIQSDDYGK	16	Unmodified	_WLHGLESQIQSDDYGK_			0	0	0	Q01082	Q01082	Q01082	SPTBN1	Spectrin beta chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	625.96724	1874.87989	0.2227	0.00013941	-0.4925	-0.00030829	-0.2698	-0.00016888	626.30112023979	9.9662	0.12411	9.9662	9.9218	10.046	0	699	37	0.85560534332665	0.0244432719031649	0.85560534332665	517.821967754088	0	14.7933428115733						453	15	5	NaN	NaN	NaN	0.00012133	1	29033	70.195	66.907	1	200730			21948	1511	18513	19043	21948	21948		
WLHNEDQMAVEK	12	Unmodified	_WLHNEDQMAVEK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	500.569764	1498.68746	-0.44322	-0.00022186	1.0968	0.00054903	0.65359	0.00032717	500.570508180556	5.7978	0.19507	5.7978	5.7534	5.9485	0	768	43	0.808687310729125	0.0286084797705708	0.808687310729125	490.326852632397	0	17.3460194792152						559	23	5	NaN	NaN	NaN	1.3561E-09	1	18488	131.54	99.405	1	404020			21949	1002	18514	19044	21949	21949		
WLHNEDQMAVEK	12	Unmodified	_WLHNEDQMAVEK_			0	0	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.351008	1498.68746	2.3909	0.001794	-0.15782	-0.00011842	2.2331	0.0016756	750.351339491898	5.7978	0.337	5.7978	5.7268	6.0638	0	435	67	1.03374239103424	0.0442821075233106	1.03374239103424	417.858066392643	0	17.8996585473961						1089	39	5	NaN	NaN	NaN	1.9336E-11	1	18489	160.62	113.06	1	660830			21950	1002	18514	19044	21950	21950		
WLHNEDQMAVEK	12	Oxidation (M)	_WLHNEDQM(Oxidation (M))AVEK_	WLHNEDQM(1)AVEK	WLHNEDQM(50)AVEK	0	1	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.901402	1514.68238	-0.038508	-1.9481E-05	1.7787	0.00089984	1.7402	0.00088036	505.902604122406	4.0509	0.13301	4.0509	4.0154	4.1484	0	771	28	0.806643990516186	0.0183924424534009	0.806643990516186	489.040736507802	0	11.1507104860878						236	16	4	NaN	NaN	NaN	0.034854	1	18951	50.297	40.046	1	71625			21951	1002	18514	19045	21951	21951	358	
WLHNEDQMAVEK	12	Oxidation (M)	_WLHNEDQM(Oxidation (M))AVEK_	WLHNEDQM(1)AVEK	WLHNEDQM(78)AVEK	0	1	0	P37837	P37837	P37837	TALDO1	Transaldolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.348465	1514.68238	2.8713	0.0021774	-0.83407	-0.00063251	2.0372	0.0015449	758.34836643125	4.0509	0.088699	4.0509	4.0154	4.1041	0	462	43	1.01562323939346	0.0282028744341156	1.01562323939346	410.494297897698	0	11.3990293747544						255	11	4	NaN	NaN	NaN	0.0020353	1	18952	78.043	73.515	1	55102			21952	1002	18514	19045	21952	21952	358	
WLHSMTDDPPTTK	13	Unmodified	_WLHSMTDDPPTTK_			0	0	0	Q9UI09	Q9UI09	Q9UI09	NDUFA12	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.858666	1527.70278	2.2289	0.0017048	-1.5018	-0.0011487	0.7271	0.00055613	764.85650687522	6.1968	0.11529	6.1968	6.1436	6.2589	0	435	40	1.03374239103424	0.0261576594975734	1.03374239103424	417.785445479933	0	10.5715790710416						255	14	4	NaN	NaN	NaN	0.0017156	1	19344	47.361	45.987	1	52059			21953	3229	18515	19046	21953	21953		
WLITLNK	7	Unmodified	_WLITLNK_			0	0	0	P06730	P06730	P06730	EIF4E	Eukaryotic translation initiation factor 4E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	444.271096	886.527639	-2.5476	-0.0011318	-0.46697	-0.00020746	-3.0145	-0.0013393	444.27101099525	12.564	0.1596	12.564	12.52	12.68	0	789	37	0.794378096728713	0.0245420354301715	0.794378096728713	323.12310720298	0	9.9827761842115						366	19	3	NaN	NaN	NaN	0.0083261	1	2103	75.915	0	1	151580			21954	543	18516	19047	21954	21954		
WLLDGISSGK	10	Unmodified	_WLLDGISSGK_			0	0	0	Q9NP74	Q9NP74	Q9NP74	PALMD	Palmdelphin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.292756	1074.57096	-0.52314	-0.0002816	-1.0628	-0.00057207	-1.5859	-0.00085367	538.292196757381	13.345	0.08872	13.345	13.309	13.398	0	702	28	0.853568545818287	0.018331179343674	0.853568545818287	346.271559502774	0	7.43650417995877						126	11	2	NaN	NaN	NaN	0.056168	1	6076	24.821	18.13	1	26595			21955	2977	18517	19048	21955	21955		
WLLLCNPGLADTIVEK	16	Unmodified	_WLLLCNPGLADTIVEK_			0	0	0	P11216	P11216	P11216	PYGB	Glycogen phosphorylase, brain form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	921.49513	1840.97571	1.0864	0.0010011	-0.34559	-0.00031846	0.74084	0.00068268	921.495060575199	17.991	0.097544	17.991	17.947	18.045	0	225	46	1.17390432875292	0.0299005515005901	1.17390432875292	473.705991583445	0	12.0657791700334						373	12	4	NaN	NaN	NaN	0.00014916	1	28263	58.313	39.501	1	81383			21956	646	18518	19049	21956	21956		
WLLLCNPGLAELIAEK	16	Unmodified	_WLLLCNPGLAELIAEK_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.505497	1838.99644	1.5514	0.0014281	-1.3158	-0.0012112	0.23563	0.0002169	921.006716096336	19.845	0.035453	19.845	19.827	19.862	0	219	34	1.17788915118882	0.0219180319547998	1.17788915118882	475.31781721459	0	8.84466173738019						107	5	3	NaN	NaN	NaN	0.020619	1	28204	39.702	35.175	1	22757			21957	545	18519	19050	21957	21957		
WLLQGIFSTTVLCQK	15	Unmodified	_WLLQGIFSTTVLCQK_			0	0	0	Q01650	Q01650	Q01650	SLC7A5	Large neutral amino acids transporter small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	897.484565	1792.95458	1.6361	0.0014684	0.99445	0.0008925	2.6306	0.0023609	897.485495832135	19.729	0.079808	19.729	19.703	19.782	0	270	37	1.14398322290989	0.0239648752236348	1.14398322290989	461.724359560132	0	9.67249033287857						247	10	4	NaN	NaN	NaN	0.00013041	1	27052	54.199	45.393	1	63043			21958	1518	18520	19051	21958	21958		
WLLSDYVK	8	Unmodified	_WLLSDYVK_			0	0	0	Q9UKF6	Q9UKF6	Q9UKF6	CPSF3	Cleavage and polyadenylation specificity factor subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.279118	1022.54368	-0.020721	-1.0615E-05	-2.0504	-0.0010504	-2.0711	-0.001061	512.278003512892	14.444	0.10642	14.444	14.4	14.506	0	666	34	0.877991458330206	0.0223705821148275	0.877991458330206	356.408607355545	0	9.08103141736933						254	13	3	NaN	NaN	NaN	0.053079	1	4803	41.025	19.75	1	88308			21959	3261	18521	19052	21959	21959		
WLLYHELVLTTK	12	Unmodified	_WLLYHELVLTTK_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	505.957177	1514.8497	-2.2209	-0.0011237	-0.80423	-0.00040691	-3.0252	-0.0015306	505.956427658909	14.356	0.053197	14.356	14.338	14.391	0	804	13	0.78414869089473	0.00818637343396067	0.78414869089473	475.402139911882	0	4.96311413104837						52	7	2	NaN	NaN	NaN	0.058576	1	18985	18.811	16.332	1	11484			21960	248	18522	19053	21960	21960		
WLPAGDALLQMITIHLPSPVTAQK	24	Unmodified	_WLPAGDALLQMITIHLPSPVTAQK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	867.480481	2599.41961	1.592	0.0013811	-2.3376	-0.0020278	-0.74555	-0.00064675	867.813017884712	20.093	0.088688	20.093	20.057	20.146	0	429	166	1.03776581230406	0.110621575699299	1.03776581230406	626.781169151771	0	66.8122997772283						1340	11	7	NaN	NaN	NaN	7.236E-14	1	37242	125.52	120.43	1	831840			21961	679	18523	19054	21961	21961		
WLPLGLGLNHLGK	13	Unmodified	_WLPLGLGLNHLGK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.281995	1416.82415	-0.35159	-0.0001664	-1.0838	-0.00051296	-1.4354	-0.00067936	473.281553623229	15.18	0.16848	15.18	15.127	15.296	0	702	40	0.853568545818287	0.0264820512722772	0.853568545818287	517.812600691753	0	16.0651887984043						502	20	5	NaN	NaN	NaN	0.036221	1	15996	52.591	30.547	1	370070			21962	1642	18524	19055	21962	21962		
WLPLGLGLNHLGK	13	Unmodified	_WLPLGLGLNHLGK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.419354	1416.82415	1.7072	0.0012111	0.57424	0.00040737	2.2814	0.0016185	709.419655398263	15.18	0.15074	15.18	15.136	15.287	-1.7764E-15	375	34	1.07392668217569	0.0220724150021865	1.07392668217569	434.330733201076	0	8.9267995204255						421	18	4	NaN	NaN	NaN	0.00039506	1	15997	69.915	61.441	1	204250			21963	1642	18524	19055	21963	21963		
WLPSLVLAR	9	Unmodified	_WLPSLVLAR_			0	0	0	Q99808	Q99808	Q99808	SLC29A1	Equilibrative nucleoside transporter 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.824027	1053.6335	-0.54157	-0.00028585	-1.7139	-0.00090465	-2.2555	-0.0011905	527.82333258271	15.349	0.10642	15.349	15.313	15.42	0	663	28	0.880024865079826	0.0183006625091034	0.880024865079826	357.094009121407	0	7.42599124669141						217	13	3	NaN	NaN	NaN	0.022642	1	5567	47.349	35.282	1	42231			21964	2676	18525	19056	21964	21964		
WLQDEMFHSDFQHHNK	16	Unmodified	_WLQDEMFHSDFQHHNK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	525.485162	2097.91154	-1.3706	-0.00072024	-0.18072	-9.4967E-05	-1.5513	-0.00081521	525.735977320616	8.9375	0.088639	8.9375	8.9021	8.9908	0	777	31	0.802556497112065	0.020440313348464	0.802556497112065	647.114122448239	0	16.4813511355966						295	11	5	NaN	NaN	NaN	0.044573	1	33278	10.972	9.7009	1	87689			21965	1713	18526	19057	21965	21965		
WLQDEMFHSDFQHHNK	16	Unmodified	_WLQDEMFHSDFQHHNK_			0	0	0	Q14008	Q14008	Q14008	CKAP5	Cytoskeleton-associated protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	700.311124	2097.91154	0.72	0.00050423	0.54167	0.00037934	1.2617	0.00088356	700.31178673035	8.9464	0.05323	8.9464	8.9109	8.9642	0	573	13	0.940896116921038	0.00809930648149604	0.940896116921038	568.996466889118	0	4.89796555575549						36	7	2	NaN	NaN	NaN	0.046127	1	33279	7.9648	7.6597	1	7411.6			21966	1713	18526	19057	21966	21966		
WLQDLQEENESLK	13	Unmodified	_WLQDLQEENESLK_			0	0	0	Q86UP2	Q86UP2	Q86UP2	KTN1	Kinectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.399209	1630.78387	2.2801	0.0018614	-0.71407	-0.00058297	1.566	0.0012785	816.39891041399	11.083	0.19509	11.083	11.012	11.208	0	384	52	1.06790610341098	0.034116624349938	1.06790610341098	431.347587304337	0	13.7803534911071						718	23	5	NaN	NaN	NaN	4.9074E-11	1	22513	168.05	141.1	1	251090			21967	2167	18527	19058	21967	21967		
WLSTSIPEAQWHSSLAR	17	Unmodified	_WLSTSIPEAQWHSSLAR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	657.002396	1967.98536	0.37978	0.00024951	-0.16269	-0.00010689	0.21708	0.00014262	657.002521418732	12.485	0.20393	12.485	12.44	12.644	0	633	91	0.900343422309015	0.0608712518412119	0.900343422309015	544.708759423785	0	36.8271742242141						919	24	4	NaN	NaN	NaN	7.8319E-07	1	31074	94.507	80.114	1	305700			21968	1127	18528	19059	21968	21968		
WLSTSIPEAQWHSSLAR	17	Unmodified	_WLSTSIPEAQWHSSLAR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	984.999956	1967.98536	1.5299	0.0015069	-0.027347	-2.6937E-05	1.5025	0.00148	985.000457029974	12.476	0.097556	12.476	12.44	12.538	0	183	49	1.20177511391933	0.0318129977486037	1.20177511391933	484.718578719432	0	12.8313116779539						294	12	3	NaN	NaN	NaN	0.0030991	1	31075	40.224	35.408	1	59628			21969	1127	18528	19059	21969	21969		
WLTIQSGEQPYK	12	Unmodified	_WLTIQSGEQPYK_			0	0	0	O43920	O43920	O43920	NDUFS5	NADH dehydrogenase [ubiquinone] iron-sulfur protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.372266	1448.72998	1.7263	0.0012522	0.019707	1.4295E-05	1.746	0.0012665	725.372290771448	10.392	0.2483	10.392	10.277	10.525	0	459	70	1.01763759082241	0.0463557219316852	1.01763759082241	411.477969061549	0	18.7437634840286						648	29	4	NaN	NaN	NaN	4.6262E-05	1	16947	92.428	65.481	1	158740			21970	244	18529	19060	21970	21970		
WLTLEVCR	8	Unmodified	_WLTLEVCR_			0	0	0	Q9NR56;Q5VZF2;Q9NUK0	Q9NR56	Q9NR56	MBNL1;MBNL2;MBNL3	Muscleblind-like protein 1;Muscleblind-like protein 2;Muscleblind-like protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.781502	1075.54845	0.0016266	8.764E-07	-2.4155	-0.0013014	-2.4138	-0.0013005	538.780947383669	12.44	0.19505	12.44	12.361	12.556	0	684	40	0.86578508874114	0.0264599929662752	0.86578508874114	351.223473467473	0	10.7340386874216						498	23	5	NaN	NaN	NaN	0.012404	1	6096	60.709	41.221	1	138180			21971	2014	18530	19061	21971	21971		
WLVIDPVPAAVPTQVAGPK	19	Unmodified	_WLVIDPVPAAVPTQVAGPK_			0	0	0	Q6P1N0	Q6P1N0	Q6P1N0	CC2D1A	Coiled-coil and C2 domain-containing protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	979.559118	1957.10368	0.33539	0.00032853	0.3838	0.00037595	0.71918	0.00070448	980.060677978469	16.972	0.070911	16.972	16.936	17.007	0	198	37	1.1918274123006	0.023892523873678	1.1918274123006	480.725033351705	0	9.63707850439454						168	9	3	NaN	NaN	NaN	0.0021422	1	30849	29.98	23.124	1	32297			21972	2060	18531	19062	21972	21972		
WMALESILHR	10	Unmodified	_WMALESILHR_			0	0	0	P00533	P00533	P00533	EGFR	Epidermal growth factor receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	419.225381	1254.65431	-1.9423	-0.00081424	-0.53695	-0.0002251	-2.4792	-0.0010393	419.225334890669	14.302	0.097538	14.302	14.267	14.365	0	810	22	0.78005493425781	0.0143311421844247	0.78005493425781	473.80590445187	0	8.70474563561373						103	12	3	NaN	NaN	NaN	0.061055	1	11063	20.234	14.925	1	20704			21973	483	18532	19063	21973	21973		
WMDEAQALDTADR	13	Unmodified	_WMDEAQALDTADR_			0	0	0	Q9BXJ9	Q9BXJ9	Q9BXJ9	NAA15	N-alpha-acetyltransferase 15, NatA auxiliary subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	761.335555	1520.65656	2.0233	0.0015404	-0.24465	-0.00018626	1.7787	0.0013542	761.335782795491	10.17	0.18621	10.17	10.108	10.294	0	447	64	1.02569221487577	0.0422546944183948	1.02569221487577	414.549222265864	0	17.0778820918991						710	22	6	NaN	NaN	NaN	4.4826E-11	1	19147	156.14	140.26	1	252060			21974	2785	18533	19064	21974	21974		
WMEANQHSLNILGQK	15	Unmodified	_WMEANQHSLNILGQK_			0	0	0	P98175	P98175	P98175	RBM10	RNA-binding protein 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	590.298156	1767.87264	-1.5489	-0.00091431	0.31961	0.00018866	-1.2293	-0.00072564	590.298420888497	10.64	0.097507	10.64	10.596	10.693	0	786	37	0.796423123669906	0.0245352049516095	0.796423123669906	482.218217261663	0	14.8555741794589						278	12	4	NaN	NaN	NaN	0.00010605	1	26341	58.476	54.493	1	73285			21975	1490	18534	19065	21975	21975		
WMEEQAQSLIDK	12	Unmodified	_WMEEQAQSLIDK_			0	0	0	P09234	P09234	P09234	SNRPC	U1 small nuclear ribonucleoprotein C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.353216	1476.69188	1.5842	0.0011713	1.3445	0.00099409	2.9288	0.0021654	739.35429041752	11.154	0.20394	11.154	11.075	11.279	0	453	64	1.02166545906632	0.0422897180004469	1.02166545906632	413.032618724743	0	17.0966267048103						756	24	5	NaN	NaN	NaN	4.8719E-11	1	17786	144.27	138	1	474490			21976	599	18535	19066	21976	21976		
WMIQYNNLNLK	11	Unmodified	_WMIQYNNLNLK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.871379	1435.72821	1.9213	0.0013811	-0.72199	-0.00051902	1.1993	0.00086213	718.8709546108	13.912	0.097572	13.912	13.877	13.974	0	435	40	1.03374239103424	0.0261576594975734	1.03374239103424	418.025690001942	0	10.577658181715						310	12	4	NaN	NaN	NaN	4.6772E-05	1	16563	87.251	58.605	1	104310			21977	656	18536	19067	21977	21977		
WMNYLEVNR	9	Unmodified	_WMNYLEVNR_			0	0	0	O60488	O60488	O60488	ACSL4	Long-chain-fatty-acid--CoA ligase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	612.79514	1223.57573	0.30807	0.00018878	0.37575	0.00023026	0.68382	0.00041904	612.796255352018	11.651	0.12417	11.651	11.598	11.722	0	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.468743542141	0	9.02482543050479						232	15	3	NaN	NaN	NaN	4.1543E-05	1	10114	94.806	86.043	1	56976			21978	260	18537	19068	21978	21978		
WNDFAEDSLR	10	Unmodified	_WNDFAEDSLR_			0	0	0	O60313	O60313	O60313	OPA1	Dynamin-like 120 kDa protein, mitochondrial;Dynamin-like 120 kDa protein, form S1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.783284	1251.55202	1.3092	0.00082056	1.6468	0.0010322	2.9559	0.0018527	626.784408432739	9.975	0.11526	9.975	9.9396	10.055	0	510	37	0.983355730988811	0.0242274096445863	0.983355730988811	398.208177322605	0	9.81084701272619						302	14	4	NaN	NaN	NaN	4.412E-05	1	10952	90.761	77.113	1	86387			21979	255	18538	19069	21979	21979		
WNDGLDQYR	9	Unmodified	_WNDGLDQYR_			0	0	0	O95340	O95340	O95340	PAPSS2	Bifunctional 3-phosphoadenosine 5-phosphosulfate synthase 2;Sulfate adenylyltransferase;Adenylyl-sulfate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.764894	1165.51524	1.1466	0.00066936	3.063	0.001788	4.2096	0.0024574	583.766670814549	7.8197	0.088702	7.8197	7.7576	7.8463	0	618	58	0.910492137470517	0.0385330681003847	0.910492137470517	368.999016029529	0	15.6164601850845						264	11	4	NaN	NaN	NaN	0.0030766	1	8481	81.642	56.792	1	101820			21980	422	18539	19070	21980	21980		
WNDNCPSWNTIDPEER	16	Unmodified	_WNDNCPSWNTIDPEER_			0	0	0	P17655	P17655	P17655	CAPN2	Calpain-2 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.92633	2031.8381	1.5487	0.0015749	0.14474	0.00014719	1.6934	0.0017221	1017.42829286477	11.713	0.23056	11.713	11.633	11.864	0	261	46	1.14997238118939	0.029933448623392	1.14997238118939	463.722602780504	0	12.0705652873848						518	27	4	NaN	NaN	NaN	9.1708E-09	1	32178	110.14	109.46	1	112480			21981	739	18540	19071	21981	21981		
WNENVQYLSEDR	12	Unmodified	_WNENVQYLSEDR_			0	0	0	O43929	O43929	O43929	ORC4	Origin recognition complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.854969	1551.69539	1.3951	0.0010838	3.1662	0.0024596	4.5612	0.0035434	776.858573342778	9.2834	0.26606	9.2834	9.2125	9.4785	0	414	58	1.04781950764076	0.0382251566582583	1.04781950764076	423.415869344614	0	15.446494190333						388	31	3	NaN	NaN	NaN	1.3789E-11	1	20108	154.94	135.62	1	111520		+	21982	245	18541	19072	21982	21982		
WNFDDLLEK	9	Unmodified	_WNFDDLLEK_			0	0	0	Q9Y295	Q9Y295	Q9Y295	DRG1	Developmentally-regulated GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.287671	1178.56079	-0.062814	-3.7078E-05	-1.67	-0.00098579	-1.7328	-0.0010229	590.286539088304	16.457	0.14187	16.457	16.404	16.546	0	618	40	0.910492137470517	0.0263756909350701	0.910492137470517	368.951262292622	0	10.688004941338						387	17	4	NaN	NaN	NaN	0.0045893	1	8838	67.507	57.993	1	188280			21983	3339	18542	19073	21983	21983		
WNLDELPK	8	Unmodified	_WNLDELPK_			0	0	0	P17844	P17844	P17844	DDX5	Probable ATP-dependent RNA helicase DDX5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.766374	1013.5182	-0.25724	-0.00013062	1.1938	0.00060618	0.93657	0.00047556	507.766441464503	12.05	0.21282	12.05	11.961	12.174	0	630	127	0.902373728295776	0.0854447649585706	0.902373728295776	366.349559145797	0	34.6892324015314						1250	25	4	NaN	NaN	NaN	0.011001	1	4592	67.464	45.536	1	450080			21984	743	18543	19074	21984	21984		
WNQDTMEQK	9	Unmodified	_WNQDTMEQK_			0	0	0	Q15637	Q15637	Q15637	SF1	Splicing factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	590.258588	1178.50262	2.0867	0.0012317	0.28118	0.00016597	2.3679	0.0013977	590.259023204922	4.0509	0.17736	4.0509	4.0066	4.1839	0	627	34	0.90440375274676	0.0223271759310266	0.90440375274676	366.484317065966	0	9.04746336826088						399	21	5	NaN	NaN	NaN	0.00014467	1	8835	108.3	86.375	1	145380			21985	1858	18544	19075	21985	21985		
WNQLQAFWGTGK	12	Unmodified	_WNQLQAFWGTGK_			0	0	0	Q7Z3B4	Q7Z3B4	Q7Z3B4	NUP54	Nucleoporin p54	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.359493	1434.70443	1.368	0.00098269	-3.4839	-0.0025027	-2.116	-0.00152	718.856839696723	14.391	0.2128	14.391	14.302	14.515	0	474	49	1.00756305028564	0.0322407656624188	1.00756305028564	407.442049485198	0	13.0376393167096						368	25	3	NaN	NaN	NaN	0.0032447	1	16531	64.906	32.357	1	82077			21986	2131	18545	19076	21986	21986		
WNQQQLDDLYLIAICHR	17	Unmodified	_WNQQQLDDLYLIAICHR_			0	0	0	Q96C86	Q96C86	Q96C86	DCPS	m7GpppX diphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	729.365229	2185.07386	0.075868	5.5336E-05	-0.48147	-0.00035117	-0.4056	-0.00029583	729.69918897144	17.158	0.097532	17.158	17.122	17.22	0	534	31	0.967195187796614	0.0202118620218336	0.967195187796614	584.747230821737	0	12.2196951516507						294	12	4	NaN	NaN	NaN	5.0614E-14	1	34522	145.95	138.3	1	79725			21987	2491	18546	19077	21987	21987		
WNSPAEEGSSDCEVFSK	17	Unmodified	_WNSPAEEGSSDCEVFSK_			0	0	0	P34932	P34932	P34932	HSPA4	Heat shock 70 kDa protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.901987	1927.78942	2.9226	0.0028201	-1.1367	-0.0010968	1.7859	0.0017233	965.402580807396	8.8221	0.31948	8.8221	8.6979	9.0174	0	291	82	1.12999890578964	0.0539841010729214	1.12999890578964	455.835234390475	0	21.7768842428553						2100	37	6	NaN	NaN	NaN	1.7356E-14	1	30227	148.62	147.74	1	1082300			21988	955	18547	19078	21988	21988		
WNTDNTLGTEIAIEDQICQGLK	22	Unmodified	_WNTDNTLGTEIAIEDQICQGLK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1260.10776	2518.20097	0.26157	0.00032961	-0.12081	-0.00015224	0.14076	0.00017737	1260.60877758649	17.92	0.070919	17.92	17.885	17.956	0	69	52	1.27715511956461	0.0336510508969117	1.27715511956461	514.333014716297	0	13.5518749375412						252	9	3	NaN	NaN	NaN	4.0565E-06	1	36911	84.266	84.01	1	44393			21989	1070	18548	19079	21989	21989		
WNTDNTLGTEIAIEDQICQGLK	22	Unmodified	_WNTDNTLGTEIAIEDQICQGLK_			0	0	0	P45880	P45880	P45880	VDAC2	Voltage-dependent anion-selective channel protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	840.407599	2518.20097	1.0086	0.00084767	1.0476	0.00088039	2.0562	0.0017281	840.743012120876	17.912	0.11525	17.912	17.876	17.991	0	405	40	1.05384839605172	0.0261215838858069	1.05384839605172	636.603753735449	0	15.7794028225708						412	14	5	NaN	NaN	NaN	4.8484E-06	1	36912	98.328	94.569	1	97674			21990	1070	18548	19079	21990	21990		
WNTDNTLGTEISWENK	16	Unmodified	_WNTDNTLGTEISWENK_			0	0	0	Q9Y277	Q9Y277	Q9Y277	VDAC3	Voltage-dependent anion-selective channel protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.442137	1906.86972	2.1579	0.0020596	-1.5554	-0.0014845	0.60255	0.0005751	954.941770773158	13.008	0.25717	13.008	12.919	13.176	0	276	88	1.13998907770044	0.0579669749036662	1.13998907770044	459.901269227225	0	23.3853866260149						1034	30	4	NaN	NaN	NaN	1.5754E-08	1	29735	137.4	128.14	1	214710			21991	3334	18549	19080	21991	21991		
WNTDNTLGTEITVEDQLAR	19	Unmodified	_WNTDNTLGTEITVEDQLAR_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.52947	2175.04439	1.7501	0.001905	-0.57413	-0.00062496	1.176	0.0012801	1089.03125518361	14.329	0.24825	14.329	14.232	14.48	0	159	133	1.21767724410157	0.087306096394725	1.21767724410157	490.804903585039	0	35.19016260751						1421	29	5	NaN	NaN	NaN	1.1058E-14	1	34378	177.74	167.26	1	438310			21992	794	18550	19081	21992	21992		
WNTDSVEEFLSEK	13	Unmodified	_WNTDSVEEFLSEK_			0	0	0	O60613	O60613	O60613	SEP15	15 kDa selenoprotein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.364835	1582.71512	1.7516	0.0013879	1.9101	0.0015135	3.6617	0.0029014	792.365104192629	15.579	0.10641	15.579	15.535	15.642	0	420	31	1.04379886199097	0.0201032305459359	1.04379886199097	421.718044111329	0	8.12215396554484						257	13	4	NaN	NaN	NaN	2.5011E-07	1	21048	82.437	71.466	1	78475			21993	271	18551	19082	21993	21993		
WNTTLYEGTWR	11	Unmodified	_WNTTLYEGTWR_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.841133	1425.66771	0.62328	0.00044493	0.32845	0.00023446	0.95174	0.00067939	713.8411591208	12.032	0.12415	12.032	11.979	12.103	0	504	43	0.987393073566096	0.0282496839404589	0.987393073566096	399.309792857345	0	11.4244020386021						239	15	2	NaN	NaN	NaN	5.2078E-05	1	16248	74.424	54.19	1	97868			21994	559	18552	19083	21994	21994		
WPDFNQEAYVGGTMVR	16	Unmodified	_WPDFNQEAYVGGTMVR_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.433061	1868.85157	1.9184	0.0017945	2.4762	0.0023163	4.3945	0.0041108	935.935605937906	14.595	0.25715	14.595	14.48	14.737	0	258	61	1.15196821829984	0.0399195054256132	1.15196821829984	464.802241533528	0	16.1069336011017						882	30	4	NaN	NaN	NaN	0.0035247	1	28902	59.67	57.829	1	271970			21995	1586	18553	19084	21995	21995		
WPDLLTEMVNR	11	Unmodified	_WPDLLTEMVNR_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.347737	1372.68092	0.085288	5.8622E-05	0.077278	5.3117E-05	0.16257	0.00011174	687.348010402599	17.353	0.39017	17.353	17.043	17.433	0	507	31	0.985374541851584	0.0201867152025123	0.985374541851584	398.641246629516	0	8.16669902853704						665	45	4	NaN	NaN	NaN	0.00089377	1	14566	87.895	67.712	1	191580			21996	1264	18554	19085	21996	21996		
WPDPEDLLTPR	11	Unmodified	_WPDPEDLLTPR_			0	0	0	Q8TAE8	Q8TAE8	Q8TAE8	GADD45GIP1	Growth arrest and DNA damage-inducible proteins-interacting protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.838059	1337.66157	0.35489	0.00023772	9.4837	0.0063526	9.8386	0.0065903	669.843687873887	15.961	0.31924	15.961	15.748	16.067	0	528	43	0.971237000454584	0.0282887809416775	0.971237000454584	393.024299689398	0	11.4474410606945						340	37	2	NaN	NaN	NaN	0.041488	1	13527	26.579	6.3962	1	107620			21997	2332	18555	19086	21997	21997		
WPEVDDDSIEDLGEVK	16	Unmodified	_WPEVDDDSIEDLGEVK_			0	0	0	O43583	O43583	O43583	DENR	Density-regulated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	923.423078	1844.8316	1.2318	0.0011375	1.0073	0.00093016	2.2391	0.0020676	923.423875894833	14.87	0.16848	14.87	14.817	14.985	0	279	58	1.13799159301878	0.0379574461906307	1.13799159301878	459.206931607862	0	15.3167409177709						490	20	4	NaN	NaN	NaN	0.00025719	1	28343	63.79	62.202	1	130040			21998	208	18556	19087	21998	21998		
WPFSLSEQQLDAR	13	Unmodified	_WPFSLSEQQLDAR_			0	0	0	Q96L92	Q96L92	Q96L92	SNX27	Sorting nexin-27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.891355	1575.76816	1.3919	0.001098	3.5693	0.0028158	4.9612	0.0039139	788.893950757771	14.666	0.11528	14.666	14.613	14.728	0	375	40	1.07392668217569	0.0260891796066893	1.07392668217569	433.906941456339	0	10.5410139408304						314	14	3	NaN	NaN	NaN	0.0098049	1	20850	39.293	36.622	1	92317			21999	2580	18557	19088	21999	21999		
WPYAGTAEAIK	11	Unmodified	_WPYAGTAEAIK_			0	0	0	P0DPI2;A0A0B4J2D5	P0DPI2	P0DPI2			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.811313	1205.60807	0.38264	0.00023104	0.16791	0.00010139	0.55055	0.00033243	603.811608362423	9.3544	0.26605	9.3544	9.2656	9.5317	0	594	43	0.926715457081489	0.0283750805572571	0.926715457081489	375.427810394052	0	11.4952160147569						567	31	3	NaN	NaN	NaN	0.0055331	1	9622	65.933	50.351	1	187270			22000	0	18558	19089	22000	22000		
WQALLVQIR	9	Unmodified	_WQALLVQIR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.840208	1125.66586	0.088102	4.9675E-05	-1.8456	-0.0010406	-1.7575	-0.00099094	563.839375090403	14.205	0.088675	14.205	14.161	14.249	0	621	25	0.908462957275599	0.0162345681702797	0.908462957275599	368.3290585872	0	6.58217615021016						149	11	3	NaN	NaN	NaN	0.0049253	1	7419	78.178	64.531	1	33865			22001	1737	18559	19090	22001	22001		
WQASSLPADDLCTENAIMLK	20	Unmodified	_WQASSLPADDLCTENAIMLK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1132.0403	2262.06605	0.19772	0.00022382	1.3044	0.0014766	1.5021	0.0017004	1132.54309432543	15.021	0.053228	15.021	14.994	15.047	0	60	34	1.28308947459206	0.0217622834966473	1.28308947459206	517.044096140026	0	8.76950549691355						120	7	3	NaN	NaN	NaN	0.025441	1	35294	18.396	13.315	1	19541			22002	1737	18560	19091	22002	22002		
WQDIQNDPR	9	Unmodified	_WQDIQNDPR_			0	0	0	Q14839;Q8TDI0	Q14839	Q14839	CHD4;CHD5	Chromodomain-helicase-DNA-binding protein 4;Chromodomain-helicase-DNA-binding protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.278169	1170.54179	2.1018	0.0012322	-0.08335	-4.8866E-05	2.0184	0.0011834	586.277820126066	4.9731	0.13299	4.9731	4.9376	5.0706	0	582	34	0.934820374997243	0.0222777233789591	0.934820374997243	378.839610078535	0	9.02813445668335						234	16	3	NaN	NaN	NaN	0.0039815	1	8618	69.716	57.649	1	60793			22003	1776	18561	19092	22003	22003		
WQDVLPVAR	9	Unmodified	_WQDVLPVAR_			0	0	0	Q5R3I4	Q5R3I4	Q5R3I4	TTC38	Tetratricopeptide repeat protein 38	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.300916	1082.58728	0.73868	0.00040058	-1.6946	-0.00091897	-0.9559	-0.00051838	542.299911602303	10.835	0.1419	10.835	10.782	10.924	0	648	52	0.890187667287968	0.0345583335678743	0.890187667287968	361.093183744227	0	14.0181437594348						305	17	3	NaN	NaN	NaN	0.019223	1	6277	31.952	0	1	77825			22004	1975	18562	19093	22004	22004		
WQFDIECDK	9	Unmodified	_WQFDIECDK_			0	0	0	Q13257	Q13257	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	620.768788	1239.52302	0.68577	0.00042571	0.88973	0.00055232	1.5755	0.00097802	620.769396620434	11.74	0.12415	11.74	11.695	11.82	0	540	31	0.963152256458504	0.0202174565849151	0.963152256458504	390.068117147379	0	8.18789051336921						303	15	4	NaN	NaN	NaN	0.00058474	1	10596	69.716	64.809	1	94522			22005	1647	18563	19094	22005	22005		
WQFTLPMMSTLYR	13	Unmodified	_WQFTLPMMSTLYR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.412554	1672.81056	1.2183	0.0010202	0.20184	0.00016903	1.4201	0.0011892	837.412391761413	19.525	0.097508	19.525	19.463	19.561	0	372	25	1.07593298845566	0.0160493451484018	1.07593298845566	434.497814833728	0	6.48126367656238						124	12	2	NaN	NaN	NaN	0.04081	1	23691	28.647	25.562	1	26193			22006	2064	18564	19095	22006	22006		
WQHDLFDSGFGGGAGVETGGK	21	Unmodified	_WQHDLFDSGFGGGAGVETGGK_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.992337	2120.95518	0.3603	0.00025509	-0.26633	-0.00018856	0.093967	6.6528E-05	708.32624122576	12.121	0.20398	12.121	12.068	12.272	0	645	49	0.892219381832517	0.0325051879347241	0.892219381832517	539.521240564073	0	19.6557479880017						825	24	5	NaN	NaN	NaN	7.9209E-12	1	33630	152.02	146.68	1	309240			22007	2172	18565	19096	22007	22007		
WQHDLFDSGFGGGAGVETGGK	21	Unmodified	_WQHDLFDSGFGGGAGVETGGK_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1061.48487	2120.95518	1.2031	0.001277	0.21991	0.00023343	1.423	0.0015105	1061.98655737544	12.112	0.15076	12.112	12.077	12.227	0	177	85	1.2057522832638	0.0556804219547966	1.2057522832638	486.076995414307	0	22.4465444377407						952	18	5	NaN	NaN	NaN	5.2224E-06	1	33631	67.251	63.998	1	247650			22008	2172	18565	19096	22008	22008		
WQHDLFDSGFGGGAGVETGGK	21	Unmodified	_WQHDLFDSGFGGGAGVETGGK_			0	0	0	Q86V81	Q86V81	Q86V81	ALYREF	THO complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	707.992337	2120.95518	1.1205	0.00079328	0.39631	0.00028058	1.5168	0.0010739	708.326945742647	12.121	0.21284	12.121	12.041	12.254	0	537	127	0.965173861991602	0.0848782445518356	0.965173861991602	583.636499877763	0	51.3255108916668						1459	25	4	NaN	NaN	NaN	5.4846E-07	1	33632	134.49	121.15	1	406790			22009	2172	18565	19096	22009	22009		
WQIGEQEFEALMR	13	Unmodified	_WQIGEQEFEALMR_			0	0	0	P35611	P35611	P35611	ADD1	Alpha-adducin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.89304	1635.77153	0.49121	0.00040225	-0.62643	-0.00051298	-0.13522	-0.00011073	818.892273752279	17.184	0.097528	17.184	17.14	17.238	0	387	28	1.06589869032374	0.0180692111077525	1.06589869032374	430.525696794101	0	7.29831059302836						171	12	4	NaN	NaN	NaN	0.00090275	1	22656	73.655	57.367	1	37796			22010	975	18566	19097	22010	22010		
WQLSVATEQPELEGPR	16	Unmodified	_WQLSVATEQPELEGPR_			0	0	0	Q9NR30	Q9NR30	Q9NR30	DDX21	Nucleolar RNA helicase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	920.465415	1838.91628	2.1963	0.0020216	-2.4626	-0.0022667	-0.26625	-0.00024508	920.965699093989	13.159	0.20395	13.159	13.096	13.3	0	288	46	1.13199748998575	0.0299828961966486	1.13199748998575	456.799144216592	0	12.0991092691702						628	24	5	NaN	NaN	NaN	1.4862E-24	1	28192	202.24	184.83	1	280950			22011	3011	18567	19098	22011	22011		
WQMNPYDR	8	Unmodified	_WQMNPYDR_			0	0	0	Q92499	Q92499	Q92499	DDX1	ATP-dependent RNA helicase DDX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.245283	1108.47601	1.9007	0.0010554	0.035651	1.9795E-05	1.9363	0.0010751	555.245079261437	7.7044	0.17744	7.7044	7.6511	7.8285	0	618	31	0.910492137470517	0.020293211090572	0.910492137470517	369.221014241931	0	8.22926379342766						309	21	3	NaN	NaN	NaN	0.0066182	1	6937	56.014	44.654	1	103940			22012	2404	18568	19099	22012	22012		
WQNSYSIK	8	Unmodified	_WQNSYSIK_			0	0	0	Q13404;Q15819	Q13404;Q15819	Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.256174	1024.49779	1.2207	0.00062654	-0.42293	-0.00021707	0.7978	0.00040948	513.256277931486	6.0106	0.20402	6.0106	5.9573	6.1614	0	675	37	0.871889544407995	0.0244093537126775	0.871889544407995	353.922645393007	0	9.90839160044089						334	24	2	NaN	NaN	NaN	0.026266	1	4849	56.014	40.516	1	168170			22013	1871;1659	18569	19100	22013	22013		
WQPDTEEEYEDSSGNVVNK	19	Unmodified	_WQPDTEEEYEDSSGNVVNK_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1113.4771	2224.93965	2.6052	0.0029008	-0.94463	-0.0010518	1.6606	0.001849	1113.976917273	8.3164	0.10645	8.3164	8.2721	8.3785	0	165	88	1.21370334790578	0.057625504398084	1.21370334790578	489.133532688738	0	23.2236045058627						716	13	4	NaN	NaN	NaN	5.4145E-07	1	34937	88.421	84.781	1	198470			22014	1601	18570	19101	22014	22014		
WQPGEEPAGSVVQDSR	16	Unmodified	_WQPGEEPAGSVVQDSR_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.41064	1740.80673	2.6413	0.0023016	-1.754	-0.0015284	0.88727	0.00077318	871.408916981782	8.068	0.19523	8.068	7.997	8.1922	0	381	67	1.06991323971056	0.0441418061046637	1.06991323971056	431.928164920781	0	17.8202199948793						929	23	4	NaN	NaN	NaN	0.0032797	1	25617	54.309	50.062	1	360540			22015	3434	18571	19102	22015	22015		
WQPPEFLLVHDSGPDHR	17	Unmodified	_WQPPEFLLVHDSGPDHR_			0	0	0	P18583	P18583	P18583	SON	Protein SON	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	508.252429	2028.98061	-2.3561	-0.0011975	0.63976	0.00032516	-1.7164	-0.00087235	508.503610780835	13.061	0.079798	13.061	13.017	13.096	0	774	16	0.804600385996946	0.010219444721198	0.804600385996946	648.906775439794	0	8.24193852778353						142	10	4	NaN	NaN	NaN	0.0041518	1	32134	42.941	41.466	1	28828			22016	754	18572	19103	22016	22016		
WQQHQGLLPPGMTIDLFR	18	Unmodified	_WQQHQGLLPPGMTIDLFR_			0	0	0	Q2TAY7	Q2TAY7	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	713.038565	2136.09386	-0.39028	-0.00027829	-0.033898	-2.4171E-05	-0.42418	-0.00030246	713.039437881472	17.211	0.23057	17.211	17.158	17.388	0	633	55	0.900343422309015	0.0365581956836764	0.900343422309015	544.408733572508	0	22.1055660770021						793	27	4	NaN	NaN	NaN	0.016899	1	33830	41.87	38.429	1	166650			22017	1926	18573	19104	22017	22017		
WQTLLSVDDLVEK	13	Unmodified	_WQTLLSVDDLVEK_			0	0	0	P15586	P15586	P15586	GNS	N-acetylglucosamine-6-sulfatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	773.411588	1544.80862	1.1411	0.00088257	-0.0039426	-3.0493E-06	1.1372	0.00087952	773.411641064688	16.519	0.14188	16.519	16.457	16.599	0	414	28	1.04781950764076	0.0180891625147663	1.04781950764076	423.432574378642	0	7.30998096153695						331	17	4	NaN	NaN	NaN	7.3701E-07	1	19889	99.589	92.032	1	94202			22018	716	18574	19105	22018	22018		
WQVVDTPGILDHPLEDR	17	Unmodified	_WQVVDTPGILDHPLEDR_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	664.005806	1988.99559	0.8527	0.0005662	-0.61433	-0.00040792	0.23837	0.00015828	664.005413230354	14.232	0.15075	14.232	14.178	14.329	-1.7764E-15	549	67	0.957085760909907	0.0445153797577822	0.957085760909907	578.995144760954	0	26.9298633410262						536	18	4	NaN	NaN	NaN	2.0033E-05	1	31436	76.196	66.175	1	150260			22019	2808	18575	19106	22019	22019		
WSDVAGLEGAK	11	Unmodified	_WSDVAGLEGAK_			0	0	0	O75351	O75351	O75351	VPS4B	Vacuolar protein sorting-associated protein 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.785296	1131.55604	0.74124	0.00042012	-0.40083	-0.00022719	0.3404	0.00019294	566.785496085829	8.0858	0.10648	8.0858	8.0237	8.1302	0	654	40	0.886123392477847	0.0264196242559493	0.886123392477847	359.249027880609	0	10.7109511062343						191	13	2	NaN	NaN	NaN	0.0054062	1	7573	43.168	37.672	1	57473			22020	322	18576	19107	22020	22020		
WSEPNEEELIK	11	Unmodified	_WSEPNEEELIK_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.332807	1372.65106	1.6173	0.0011116	0.57353	0.00039421	2.1909	0.0015058	687.333101447202	9.9307	0.23053	9.9307	9.8598	10.09	0	522	85	0.975277694896658	0.0565072196831565	0.975277694896658	394.556569094342	0	22.8604579433234						1026	27	5	NaN	NaN	NaN	2.2682E-07	1	14564	111.61	76.826	1	602440			22021	1013	18577	19108	22021	22021		
WSFVESLEPSHVVQVR	16	Unmodified	_WSFVESLEPSHVVQVR_			0	0	0	Q9BRJ2	Q9BRJ2	Q9BRJ2	MRPL45	39S ribosomal protein L45, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.663492	1897.96865	0.46484	0.00029455	-0.64353	-0.00040778	-0.17868	-0.00011323	633.997361934597	14.542	0.15958	14.542	14.444	14.604	0	639	37	0.896281965493857	0.0243687449926693	0.896281965493857	542.391497223257	0	14.7469218291621						407	19	4	NaN	NaN	NaN	6.9679E-07	1	29567	99.589	90.783	1	91150			22022	2707	18578	19109	22022	22022		
WSGLLVTVGEVLEK	14	Unmodified	_WSGLLVTVGEVLEK_			0	0	0	Q96M27	Q96M27	Q96M27	PRRC1	Protein PRRC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.432324	1528.85009	0.27129	0.00020765	-1.2976	-0.00099325	-1.0263	-0.00078559	765.43187709917	19.162	0.079808	19.162	19.126	19.206	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	418.595709769585	0	8.13024465080815						143	10	3	NaN	NaN	NaN	0.00024516	1	19402	60	54.849	1	33490			22023	2583	18579	19110	22023	22023		
WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK	32	Unmodified	_WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	868.684938	3470.71065	1.8843	0.0016369	-0.54153	-0.00047042	1.3428	0.0011664	868.93522315732	14.365	0.13298	14.365	14.32	14.453	0	513	301	0.981336640919867	0.201618535401694	0.981336640919867	789.208965760169	0	162.145332363519						3626	16	7	NaN	NaN	NaN	1.3586E-51	1	38641	277.91	274.11	1	1507500			22024	903	18580	19111	22024	22024		
WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK	32	Unmodified	_WSGPLSLQEVDEQPQHPLHVTYAGAAVDELGK_			0	0	0	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1157.91083	3470.71065	1.4829	0.0017171	0.84047	0.00097319	2.3234	0.0026903	1158.24529891488	14.373	0.044314	14.373	14.347	14.391	0	234	73	1.16792504164217	0.0478573414685473	1.16792504164217	704.450903576103	0	28.8658486103402						186	6	3	NaN	NaN	NaN	0.071876	1	38642	1.3929	1.3327	1	34651			22025	903	18580	19111	22025	22025		
WSLEDDDDDEDDPAEAEK	18	Unmodified	_WSLEDDDDDEDDPAEAEK_			0	0	0	Q7L014	Q7L014	Q7L014	DDX46	Probable ATP-dependent RNA helicase DDX46	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.40073	2092.7869	3.2314	0.0033845	-1.43	-0.0014978	1.8013	0.0018867	1047.90094060679	9.8598	0.11526	9.8598	9.8066	9.9218	0	249	55	1.15795408347545	0.0359077991299463	1.15795408347545	466.848902770529	0	14.4768405448397						581	14	4	NaN	NaN	NaN	3.6449E-07	1	33227	77.325	77.325	1	145480			22026	2110	18581	19112	22026	22026		
WSLELEDQER	10	Unmodified	_WSLELEDQER_			0	0	0	P37198	P37198	P37198	NUP62	Nuclear pore glycoprotein p62	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.809499	1303.60444	1.27	0.00082904	2.4914	0.0016264	3.7614	0.0024555	652.81005381604	11.287	0.22172	11.287	11.181	11.403	0	558	43	0.951016745717027	0.0283240376798207	0.951016745717027	384.944718263956	0	11.4647704720863						367	26	3	NaN	NaN	NaN	0.060238	1	12454	29.755	23.064	1	144160			22027	998	18582	19113	22027	22027		
WSLLQQQK	8	Unmodified	_WSLLQQQK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	515.787641	1029.56073	0.491	0.00025325	-0.81518	-0.00042046	-0.32418	-0.00016721	515.787482222262	9.2391	0.33698	9.2391	9.1238	9.4608	0	690	49	0.86171403876517	0.0325774564338044	0.86171403876517	349.769341131611	0	13.2231749281048						1069	39	5	NaN	NaN	NaN	0.00055305	1	4984	88.35	54.537	1	1535600		+	22028	28	18583	19114	22028	22028		
WSLQSEAHR	9	Unmodified	_WSLQSEAHR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	371.852712	1112.53631	0.21039	7.8235E-05	-2.5978	-0.00096599	-2.3874	-0.00088775	371.851820323978	5.0617	0.13298	5.0617	5.0174	5.1504	0	909	25	0.712342960434231	0.0164505330115733	0.712342960434231	433.277711100378	0	10.0059236709391						181	16	3	NaN	NaN	NaN	0.015991	1	7052	49.325	39.246	1	51131			22029	1898	18584	19115	22029	22029		
WSLQSEAHR	9	Unmodified	_WSLQSEAHR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.275429	1112.53631	1.8413	0.0010261	0.90502	0.00050434	2.7463	0.0015305	557.276000379969	5.0617	0.27486	5.0617	4.9731	5.2479	0	633	43	0.900343422309015	0.0284262615360348	0.900343422309015	365.089159067865	0	11.5268459373185						530	32	4	NaN	NaN	NaN	0.0080233	1	7055	69.905	58.544	1	156000			22030	1898	18584	19115	22030	22030		
WSMVDVQFVR	10	Unmodified	_WSMVDVQFVR_			0	0	0	Q9P016	Q9P016	Q9P016	THYN1	Thymocyte nuclear protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.818615	1265.62268	0.45325	0.00028728	0.32302	0.00020473	0.77626	0.00049201	633.819029304797	14.932	0.12416	14.932	14.879	15.003	0	555	28	0.953040030838688	0.0182095678399629	0.953040030838688	385.885071706144	0	7.37303803018466						279	15	4	NaN	NaN	NaN	0.0015496	1	11380	88.921	56.793	1	73133			22031	3141	18585	19116	22031	22031		
WSNAGELMELIR	12	Unmodified	_WSNAGELMELIR_			0	0	0	P49770	P49770	P49770	EIF2B2	Translation initiation factor eIF-2B subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	709.858469	1417.70238	0.59188	0.00042015	3.1211	0.0022155	3.713	0.0026357	709.858215496144	16.546	0.1596	16.546	16.493	16.652	0	498	34	0.991429299781895	0.0221915758833877	0.991429299781895	400.963708718462	0	8.9749380722032						283	19	3	NaN	NaN	NaN	0.0031864	1	16013	77.358	58.102	1	71824			22032	1148	18586	19117	22032	22032		
WSNFDPTGLER	11	Unmodified	_WSNFDPTGLER_			0	0	0	Q5T9A4;Q9NVI7	Q5T9A4;Q9NVI7	Q9NVI7	ATAD3B;ATAD3A	ATPase family AAA domain-containing protein 3B;ATPase family AAA domain-containing protein 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.312209	1320.60986	1.1761	0.00077774	1.2506	0.00082702	2.4266	0.0016048	661.314075927909	11.403	0.19515	11.403	11.314	11.509	0	564	67	0.946969335010767	0.0445030563663786	0.946969335010767	383.2546820063	0	18.0111478644776						628	23	4	NaN	NaN	NaN	9.1046E-06	1	12996	123.42	96.473	1	292760			22033	3068;1996	18587	19118	22033	22033		
WSPIASTLPELVQR	14	Unmodified	_WSPIASTLPELVQR_			0	0	0	Q13561	Q13561	Q13561	DCTN2	Dynactin subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	532.96299	1595.86714	-2.0738	-0.0011053	-0.3746	-0.00019965	-2.4484	-0.0013049	532.962400607822	16.12	0.10644	16.12	16.058	16.165	0	783	31	0.798467866007927	0.020440313348464	0.798467866007927	483.861057275826	0	12.386561875414						204	13	2	NaN	NaN	NaN	0.065603	1	21458	30.349	29.467	1	48705			22034	1684	18588	19119	22034	22034		
WSPTHEQQLISGSLDNIVK	19	Unmodified	_WSPTHEQQLISGSLDNIVK_			0	0	0	Q9GZL7	Q9GZL7	Q9GZL7	WDR12	Ribosome biogenesis protein WDR12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.039287	2151.09603	0.96088	0.00068995	1.6311	0.0011712	2.5919	0.0018611	718.374479493519	13.974	0.079814	13.974	13.93	14.01	0	486	52	0.999498404980629	0.0343055628620362	0.999498404980629	604.337353911924	0	20.7425374379701						314	10	4	NaN	NaN	NaN	0.062425	1	34048	21.376	20.433	1	54749			22035	2823	18589	19120	22035	22035		
WSPVQSVEK	9	Unmodified	_WSPVQSVEK_			0	0	0	P60604	P60604	P60604	UBE2G2	Ubiquitin-conjugating enzyme E2 G2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	530.277106	1058.53966	0.29252	0.00015512	3.5814	0.0018991	3.8739	0.0020542	530.278655884054	7.1191	0.21288	7.1191	7.0392	7.2521	0	666	40	0.877991458330206	0.0264269571469923	0.877991458330206	356.247571700342	0	10.7228142389333						326	25	3	NaN	NaN	NaN	0.026966	1	5682	39.01	17.735	1	100970			22036	1308	18590	19121	22036	22036		
WSQVAPPVLK	10	Unmodified	_WSQVAPPVLK_			0	0	0	Q8N766	Q8N766	Q8N766	EMC1	ER membrane protein complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.826766	1123.63898	0.53881	0.00030326	-0.28966	-0.00016303	0.24915	0.00014023	562.826673831056	9.9396	0.1241	9.9396	9.9041	10.028	0	642	34	0.894250814548268	0.0223457630982734	0.894250814548268	362.574764121611	0	9.060108923207						262	15	3	NaN	NaN	NaN	0.0067053	1	7373	69.716	52.32	1	82937			22037	2268	18591	19122	22037	22037		
WSSLACNIALDAVK	14	Unmodified	_WSSLACNIALDAVK_			0	0	0	P49368	P49368	P49368	CCT3	T-complex protein 1 subunit gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.397958	1546.78136	2.0119	0.001558	0.71625	0.00055466	2.7281	0.0021127	774.398910463431	14.214	0.29259	14.214	14.125	14.418	0	402	64	1.05585747106793	0.0422022405681552	1.05585747106793	426.675945776791	0	17.0540829626415						1107	34	6	NaN	NaN	NaN	1.0715E-11	1	19951	178.65	170.65	1	728020			22038	1129	18592	19123	22038	22038		
WSTAVEFCK	9	Unmodified	_WSTAVEFCK_			0	0	0	P08174	P08174	P08174	CD55	Complement decay-accelerating factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.263142	1126.51173	0.52089	0.00029392	0.37822	0.00021342	0.89911	0.00050734	564.263253991532	9.0174	0.11529	9.0174	8.973	9.0883	0	654	34	0.886123392477847	0.0223550653870297	0.886123392477847	359.268386889892	0	9.06360033895277						276	14	3	NaN	NaN	NaN	0.0017759	1	7423	58.426	36.04	1	83330			22039	575	18593	19124	22039	22039		
WSTDDVQINDISLQDYIAVK	20	Unmodified	_WSTDDVQINDISLQDYIAVK_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	775.053262	2322.13796	0.57361	0.00044458	-1.26	-0.00097658	-0.68641	-0.00053201	775.386150257983	17.805	0.062052	17.805	17.779	17.841	0	516	25	0.979317271586824	0.0161538387666367	0.979317271586824	591.855372651613	0	9.76265459659476						85	8	2	NaN	NaN	NaN	0.00011291	1	35832	62.494	60.392	1	25359			22040	1090	18594	19125	22040	22040		
WSTDDVQINDISLQDYIAVK	20	Unmodified	_WSTDDVQINDISLQDYIAVK_			0	0	0	P46782	P46782	P46782	RPS5	40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1162.07625	2322.13796	0.82222	0.00095548	-0.44914	-0.00052193	0.37308	0.00043355	1162.57732126785	17.805	0.31031	17.805	17.699	18.009	0	69	55	1.27715511956461	0.0356280865496466	1.27715511956461	514.571451944222	0	14.354713804926						1073	36	6	NaN	NaN	NaN	5.5756E-16	1	35833	128.28	125.53	1	370310			22041	1090	18594	19125	22041	22041		
WSTISENLFATTGYPGK	17	Unmodified	_WSTISENLFATTGYPGK_			0	0	0	Q8NFH4	Q8NFH4	Q8NFH4	NUP37	Nucleoporin Nup37	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.462341	1870.91013	1.6699	0.0015638	1.3866	0.0012985	3.0565	0.0028623	936.46368968089	15.074	0.2217	15.074	14.967	15.189	0	261	61	1.14997238118939	0.039924995069111	1.14997238118939	463.993192507773	0	16.1090181172996						667	26	4	NaN	NaN	NaN	0.00017533	1	28959	73.891	67.035	1	123900			22042	2318	18595	19126	22042	22042		
WSTLVEDYGMELR	13	Unmodified	_WSTLVEDYGMELR_			0	0	0	O00232	O00232	O00232	PSMD12	26S proteasome non-ATPase regulatory subunit 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.879598	1597.74464	1.3341	0.0010671	0.51307	0.00041039	1.8472	0.0014775	799.878929610627	14.994	0.21281	14.994	14.888	15.101	0	387	55	1.06589869032374	0.0361409246465043	1.06589869032374	430.611733517305	0	14.6005491462071						710	25	4	NaN	NaN	NaN	7.3322E-08	1	21499	124.46	104.27	1	241710			22043	64	18596	19127	22043	22043		
WSWEDWSDCLSQDPESPK	18	Unmodified	_WSWEDWSDCLSQDPESPK_			0	0	0	Q09161	Q09161	Q09161	NCBP1	Nuclear cap-binding protein subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.46548	2250.91641	0.70797	0.00079751	1.5914	0.0017927	2.2994	0.0025902	1126.96834966849	17.025	0.08866	17.025	16.989	17.078	0	165	46	1.21370334790578	0.0298103635319158	1.21370334790578	489.098492175269	0	12.012988082973						335	11	4	NaN	NaN	NaN	1.1148E-06	1	35186	89.359	86.285	1	65549			22044	1583	18597	19128	22044	22044		
WTDENIDTVALK	12	Unmodified	_WTDENIDTVALK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.853906	1403.69326	1.6942	0.0011908	-1.1837	-0.00083194	0.51053	0.00035882	702.854941558307	10.64	0.27486	10.64	10.534	10.809	0	483	64	1.00151498427745	0.0423481874794931	1.00151498427745	405.081730636519	0	17.1285276234673						795	32	4	NaN	NaN	NaN	1.7424E-05	1	15573	103.87	83.639	1	284960			22045	1737	18598	19129	22045	22045		
WTELAGCTADFR	12	Unmodified	_WTELAGCTADFR_			0	0	0	Q12907	Q12907	Q12907	LMAN2	Vesicular integral-membrane protein VIP36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.824626	1425.6347	2.1444	0.0015307	0.38673	0.00027606	2.5312	0.0018068	713.824768119395	10.507	0.16852	10.507	10.436	10.605	0	474	46	1.00756305028564	0.0302403378372377	1.00756305028564	407.466785992561	0	12.2294413857032						539	20	5	NaN	NaN	NaN	3.0983E-05	1	16243	135.28	116.78	1	303510			22046	1607	18599	19130	22046	22046		
WTETYVR	7	Unmodified	_WTETYVR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	477.737617	953.460681	-0.069545	-3.3224E-05	-0.037588	-1.7957E-05	-0.10713	-5.1181E-05	477.737435885341	5.9219	0.20401	5.9219	5.8598	6.0638	0	732	64	0.833184998970724	0.0428501113884328	0.833184998970724	338.545286678552	0	17.4111430980223						503	24	4	NaN	NaN	NaN	0.033666	1	3306	61.494	14.692	1	187680			22047	1280	18600	19131	22047	22047		
WTEYGLTFTEK	11	Unmodified	_WTEYGLTFTEK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.832443	1373.65033	1.104	0.00075934	2.4806	0.0017062	3.5845	0.0024656	687.833992943415	12.458	0.28373	12.458	12.396	12.68	0	492	49	0.995464410099171	0.0322808922550346	0.995464410099171	402.720341022236	0	13.0594040385175						752	33	4	NaN	NaN	NaN	2.1714E-07	1	14611	143.39	122.31	1	378360			22048	794	18601	19132	22048	22048		
WTGMIIGPPR	10	Unmodified	_WTGMIIGPPR_			0	0	0	Q13404;Q15819	Q13404;Q15819	Q15819	UBE2V1;UBE2V2	Ubiquitin-conjugating enzyme E2 variant 1;Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	564.305144	1126.59573	-0.32494	-0.00018336	-0.64168	-0.0003621	-0.96662	-0.00054547	564.304916612182	11.953	0.29264	11.953	11.82	12.112	0	645	55	0.892219381832517	0.0365632670229064	0.892219381832517	361.739613006623	0	14.8241366780875						812	34	4	NaN	NaN	NaN	0.0034335	1	7439	67.464	59.817	1	213090			22049	1871;1659	18602	19133	22049	22049		
WTLGFCDER	9	Unmodified	_WTLGFCDER_			0	0	0	O95336	O95336	O95336	PGLS	6-phosphogluconolactonase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	592.263673	1182.51279	0.63385	0.00037541	0.34061	0.00020173	0.97446	0.00057714	592.263881485596	12.139	0.17737	12.139	12.077	12.254	1.7764E-15	588	46	0.93076847747433	0.0303913445314729	0.93076847747433	377.153084632991	0	12.3147588402348						568	21	4	NaN	NaN	NaN	0.0032213	1	8931	79.059	72.368	1	186040			22050	421	18603	19134	22050	22050		
WTPIEYFNNK	10	Unmodified	_WTPIEYFNNK_			0	0	0	Q12965	Q12965	Q12965	MYO1E	Unconventional myosin-Ie	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	656.322045	1310.62954	0.50137	0.00032906	-1.5953	-0.0010471	-1.094	-0.000718	656.321741733981	13.664	0.15961	13.664	13.584	13.744	0	552	37	0.955063035883597	0.0242743844973287	0.955063035883597	386.560828824955	0	9.82503336213995						281	19	3	NaN	NaN	NaN	0.00095772	1	12668	88.921	75.647	1	77405			22051	1611	18604	19135	22051	22051		
WTQTLSELDLAVPFCVNFR	19	Unmodified	_WTQTLSELDLAVPFCVNFR_			0	0	0	Q9Y266	Q9Y266	Q9Y266	NUDC	Nuclear migration protein nudC	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1148.57517	2295.13579	0.073017	8.3866E-05	-0.99183	-0.0011392	-0.91881	-0.0010553	1149.07429272338	19.88	0.044332	19.88	19.862	19.907	0	72	46	1.27517645957152	0.0296880360637206	1.27517645957152	513.810203972374	0	11.9622784367938						176	6	5	NaN	NaN	NaN	3.8126E-07	1	35601	98.865	96.15	1	39337			22052	3332	18605	19136	22052	22052		
WTQYLFIK	8	Unmodified	_WTQYLFIK_			0	0	0	Q15031	Q15031	Q15031	LARS2	Probable leucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.80276	1097.59097	-0.13513	-7.4295E-05	0.60014	0.00032996	0.46501	0.00025566	549.80299609783	13.726	0.079818	13.726	13.682	13.762	0	615	34	0.912521036363781	0.0223178910428838	0.912521036363781	370.088829934418	0	9.05141016318657						170	10	3	NaN	NaN	NaN	0.038625	1	6651	40.203	28.136	1	36483			22053	1797	18606	19137	22053	22053		
WTSQDSLLGMEFSGR	15	Unmodified	_WTSQDSLLGMEFSGR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.398686	1712.78282	2.1446	0.0018388	-0.0095233	-8.1652E-06	2.135	0.0018306	857.398979259796	14.95	0.19507	14.95	14.888	15.083	-1.7764E-15	363	49	1.08195024817156	0.0320810051607971	1.08195024817156	436.844003097806	0	12.952901246178						872	23	5	NaN	NaN	NaN	8.696E-10	1	24845	158.59	134.79	1	421800			22054	1127	18607	19138	22054	22054		
WTSQDSLLGMEFSGR	15	Oxidation (M)	_WTSQDSLLGM(Oxidation (M))EFSGR_	WTSQDSLLGM(1)EFSGR	WTSQDSLLGM(96)EFSGR	0	1	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.396144	1728.77773	2.1941	0.0018987	1.2082	0.0010456	3.4022	0.0029443	865.397341477427	12.981	0.088678	12.981	12.946	13.034	0	375	49	1.07392668217569	0.0320942731309124	1.07392668217569	433.572229573087	0	12.9572956784222						415	11	4	NaN	NaN	NaN	0.00048918	1	25286	96.313	88.737	1	110860			22055	1127	18607	19139	22055	22055	401	
WTTSQLLQHPFVTVDSNK	18	Unmodified	_WTTSQLLQHPFVTVDSNK_			0	0	0	Q9H2G2	Q9H2G2	Q9H2G2	SLK	STE20-like serine/threonine-protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	701.028611	2100.064	1.568	0.0010992	2.8499	0.0019978	4.4178	0.003097	701.029688488233	13.895	0.10642	13.895	13.841	13.948	-1.7764E-15	462	28	1.01562323939346	0.0181291645901349	1.01562323939346	614.182718435482	0	10.9633367562395						205	13	5	NaN	NaN	NaN	0.0017395	1	33324	69.201	68.258	1	56293			22056	2866	18608	19140	22056	22056		
WTYDPYVPEPVPWLK	15	Unmodified	_WTYDPYVPEPVPWLK_			0	0	0	Q2NL82	Q2NL82	Q2NL82	TSR1	Pre-rRNA-processing protein TSR1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	945.477263	1888.93997	1.3565	0.0012826	1.6818	0.0015901	3.0383	0.0028726	945.979831485293	18.045	0.23053	18.045	17.92	18.151	0	249	79	1.15795408347545	0.0518882389095676	1.15795408347545	467.180839637164	0	20.9345010886						926	27	4	NaN	NaN	NaN	0.00010279	1	29356	64.266	58.878	1	222960			22057	1923	18609	19141	22057	22057		
WVDLTMDDIRR	11	Unmodified	_WVDLTMDDIRR_			0	0	1	Q00169	Q00169	Q00169	PITPNA	Phosphatidylinositol transfer protein alpha isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	473.906488	1418.69763	-1.6469	-0.0007805	-0.26855	-0.00012727	-1.9155	-0.00090776	474.240884811036	11.465	0.088706	11.465	11.42	11.509	0	765	25	0.810730346695089	0.0163454259019459	0.810730346695089	491.818772226439	0	9.91573503000575						120	11	3	NaN	NaN	NaN	0.06733	1	16054	24.821	21.718	1	25418			22058	1496	18611	19142	22058	22058		
WVDPNSPVLLEDPVLCALAK	20	Unmodified	_WVDPNSPVLLEDPVLCALAK_			0	0	0	P42330	P42330	P42330	AKR1C3	Aldo-keto reductase family 1 member C3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1118.58775	2235.16094	0.52111	0.00058291	-0.25009	-0.00027975	0.27102	0.00030316	1119.0890908361	19.596	0.062093	19.596	19.561	19.623	0	78	70	1.27121832677567	0.0455466139256677	1.27121832677567	512.298052921491	0	18.3551803335542						453	8	4	NaN	NaN	NaN	2.561E-05	1	35047	78.888	78.523	1	90806			22059	1048	18612	19143	22059	22059		
WVEQHLGPQFVER	13	Unmodified	_WVEQHLGPQFVER_			0	0	0	Q8TCD5	Q8TCD5	Q8TCD5	NT5C	5(3)-deoxyribonucleotidase, cytosolic type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.279201	1623.81578	-1.9054	-0.0010333	-0.67171	-0.00036425	-2.5771	-0.0013975	542.278138933794	9.4076	0.097522	9.4076	9.3632	9.4608	0	774	31	0.804600385996946	0.0204374693945948	0.804600385996946	487.505163423203	0	12.3830065589932						202	12	3	NaN	NaN	NaN	0.0014649	1	22308	52.837	49.101	1	43935			22060	2342	18613	19144	22060	22060		
WVGGPEIELIAIATGGR	17	Unmodified	_WVGGPEIELIAIATGGR_			0	0	0	P48643	P48643	P48643	CCT5	T-complex protein 1 subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.977961	1737.94137	1.9268	0.0016763	-0.86776	-0.00075493	1.0591	0.00092136	869.977236644397	19.667	0.23058	19.667	19.561	19.791	0	360	97	1.08395544855938	0.0641090461814977	1.08395544855938	437.602756497795	0	25.8814099442491						1218	27	4	NaN	NaN	NaN	5.5667E-19	1	25553	163.09	155.52	1	471840			22061	1113	18614	19145	22061	22061		
WVGGQHPCFIIAEIGQNHQGDLDVAK	26	Unmodified	_WVGGQHPCFIIAEIGQNHQGDLDVAK_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	963.808208	2888.4028	2.2697	0.0021875	0.75572	0.00072837	3.0254	0.0029159	964.143328588813	13.558	0.079813	13.558	13.522	13.602	0	405	46	1.05384839605172	0.0301319762986474	1.05384839605172	636.155758747564	0	18.1891724812085						324	10	5	NaN	NaN	NaN	0.063841	1	38058	9.5402	9.5402	1	66312			22062	3013	18615	19146	22062	22062		
WVGGQHPCFIIAEIGQNHQGDLDVAK	26	Unmodified	_WVGGQHPCFIIAEIGQNHQGDLDVAK_			0	0	0	Q9NR45	Q9NR45	Q9NR45	NANS	Sialic acid synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	723.107975	2888.4028	1.9445	0.0014061	1.5723	0.001137	3.5168	0.0025431	723.36179925352	13.567	0.14185	13.567	13.496	13.637	-1.7764E-15	450	43	1.02367897599655	0.0281950841620375	1.02367897599655	823.923931281442	0	22.6932516250831						346	17	4	NaN	NaN	NaN	0.0002639	1	38059	51.785	48.718	1	178390			22063	3013	18615	19146	22063	22063		
WVGTIHGAAGTVYEDLR	17	Unmodified	_WVGTIHGAAGTVYEDLR_			0	0	0	O00762	O00762	O00762	UBE2C	Ubiquitin-conjugating enzyme E2 C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	615.647842	1843.9217	-0.30916	-0.00019033	-0.23781	-0.00014641	-0.54697	-0.00033674	615.981899538416	11.287	0.10645	11.287	11.252	11.358	0	726	34	0.837263974740672	0.022429693259391	0.837263974740672	506.783980602383	0	13.5763744489369						305	13	4	NaN	NaN	NaN	0.00010795	1	28329	110.91	99.934	1	103490			22064	98	18616	19147	22064	22064		
WVHLNWGDEGLK	12	Unmodified	_WVHLNWGDEGLK_			0	0	0	Q7L2J0	Q7L2J0	Q7L2J0	MEPCE	7SK snRNA methylphosphate capping enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	485.245609	1452.715	-2.3155	-0.0011236	0.70624	0.0003427	-1.6093	-0.00078089	485.2460113569	12.094	0.10641	12.094	12.05	12.157	0	789	25	0.794378096728713	0.016361355368585	0.794378096728713	481.79008255674	0	9.92315722982823						210	13	3	NaN	NaN	NaN	3.0112E-05	1	17050	116.13	86.822	1	62902			22065	2116	18617	19148	22065	22065		
WVIYNDQK	8	Unmodified	_WVIYNDQK_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	533.271824	1064.5291	1.308	0.0006975	1.2253	0.00065342	2.5333	0.0013509	533.272415823061	7.7931	0.17736	7.7931	7.7487	7.9261	-8.8818E-16	612	31	0.914549654013882	0.0202875850561227	0.914549654013882	371.054361878213	0	8.2311516865276						253	21	3	NaN	NaN	NaN	0.0011589	1	5829	89.123	68.464	1	51540			22066	1072	18618	19149	22066	22066		
WVPEITHHCPK	11	Unmodified	_WVPEITHHCPK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.567806	1402.68159	-0.15541	-7.2818E-05	-0.98488	-0.00046148	-1.1403	-0.0005343	468.567704412561	4.911	0.2394	4.911	4.8578	5.0972	0	825	52	0.769815552739974	0.0348333119253604	0.769815552739974	467.049764886451	0	21.1334911162171						828	28	5	NaN	NaN	NaN	0.00037393	1	15541	83.623	66.228	1	544220			22067	1316	18619	19150	22067	22067		
WVPEITHHCPK	11	Unmodified	_WVPEITHHCPK_			0	0	0	P60953	P60953	P60953	CDC42	Cell division control protein 42 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.348071	1402.68159	2.6097	0.0018329	-2.4418	-0.001715	0.16784	0.00011788	702.346451121769	4.911	0.16848	4.911	4.8667	5.0351	0	444	43	1.02770517576159	0.0281834048046041	1.02770517576159	415.677780125445	0	11.3993929600218						543	20	4	NaN	NaN	NaN	0.0027155	1	15543	52.591	38.943	1	169690			22068	1316	18619	19150	22068	22068		
WVPENSEIVWSIK	13	Unmodified	_WVPENSEIVWSIK_			0	0	0	Q9BXS5	Q9BXS5	Q9BXS5	AP1M1	AP-1 complex subunit mu-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	793.914298	1585.81404	1.4938	0.0011859	2.3458	0.0018624	3.8396	0.0030483	793.916039050011	14.87	0.21282	14.87	14.817	15.03	-1.7764E-15	324	34	1.1079963157843	0.0220207732442941	1.1079963157843	447.647659070216	0	8.89673318701119						611	25	4	NaN	NaN	NaN	0.00041851	1	21140	52.837	43.323	1	153570			22069	2787	18620	19151	22069	22069		
WVPLQIDMKPEVPR	14	Unmodified	_WVPLQIDMKPEVPR_			0	0	1	Q6PKG0	Q6PKG0	Q6PKG0	LARP1	La-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	569.979876	1706.9178	0.3389	0.00019316	-1.599	-0.00091138	-1.2601	-0.00071822	570.312877717923	13.753	0.14186	13.753	13.7	13.841	0	648	70	0.890187667287968	0.0467100220368035	0.890187667287968	539.140355511387	0	28.2898301249105						563	17	4	NaN	NaN	NaN	0.0012639	1	24685	57.003	53.498	1	151420			22070	2079	18621	19152	22070	22070		
WVPLQIDMKPEVPR	14	Unmodified	_WVPLQIDMKPEVPR_			0	0	1	Q6PKG0	Q6PKG0	Q6PKG0	LARP1	La-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.466175	1706.9178	1.7233	0.0014725	0.17529	0.00014978	1.8985	0.0016222	854.466848071262	13.753	0.11528	13.753	13.7	13.815	0	234	61	1.16792504164217	0.0398920741841871	1.16792504164217	471.569855391632	0	16.107112172078						512	14	4	NaN	NaN	NaN	0.00070282	1	24687	78.043	69.668	1	110280			22071	2079	18621	19152	22071	22071		
WVPSLNEVPLHYLK	14	Unmodified	_WVPSLNEVPLHYLK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.647002	1693.91918	-1.3919	-0.00078732	-1.6019	-0.00090611	-2.9938	-0.0016934	565.645897636079	15.074	0.088666	15.074	15.03	15.118	0	756	37	0.816857749704129	0.024501095294577	0.816857749704129	494.758780572523	0	14.8399547351137						218	11	4	NaN	NaN	NaN	0.0035642	1	24319	44.598	42.614	1	48670			22072	2735	18622	19153	22072	22072		
WVPSLNEVPLHYLK	14	Unmodified	_WVPSLNEVPLHYLK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.647002	1693.91918	-0.16559	-9.3667E-05	-0.79634	-0.00045045	-0.96193	-0.00054411	565.981011591843	15.065	0.097526	15.065	15.03	15.127	0	663	31	0.880024865079826	0.0203354810451108	0.880024865079826	533.018174131398	0	12.3169030863297						287	12	4	NaN	NaN	NaN	0.010037	1	24320	43.168	29.391	1	101470			22073	2735	18622	19153	22073	22073		
WVPSLNEVPLHYLK	14	Unmodified	_WVPSLNEVPLHYLK_			0	0	0	Q9BTE3	Q9BTE3	Q9BTE3	MCMBP	Mini-chromosome maintenance complex-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.966865	1693.91918	1.1609	0.00098443	2.1609	0.0018323	3.3218	0.0028168	847.968257664275	15.074	0.070924	15.074	15.038	15.109	0	216	37	1.17988115188462	0.0239023706584269	1.17988115188462	476.426776977736	0	9.65159024426481						189	9	3	NaN	NaN	NaN	0.00020968	1	24321	48.701	44.173	1	39175			22074	2735	18622	19153	22074	22074		
WVPVVDPQEEER	12	Unmodified	_WVPVVDPQEEER_			0	0	0	Q8WUZ0	Q8WUZ0	Q8WUZ0	BCL7C	B-cell CLL/lymphoma 7 protein family member C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.864805	1481.71506	1.0748	0.00079739	-1.6531	-0.0012264	-0.57823	-0.00042897	741.863087388113	10.303	0.13301	10.303	10.25	10.383	0	477	34	1.0055473068722	0.0221731807232346	1.0055473068722	406.503688573885	0	8.96375505141287						207	16	2	NaN	NaN	NaN	0.015752	1	17958	21.15	0	1	51532			22075	2376	18623	19154	22075	22075		
WVQDELHSVLGLSER	15	Unmodified	_WVQDELHSVLGLSER_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	589.972326	1766.89515	-0.72862	-0.00042987	-1.2166	-0.00071776	-1.9452	-0.0011476	589.971926951198	14.365	0.070932	14.365	14.338	14.409	0	726	43	0.837263974740672	0.0285488687394279	0.837263974740672	506.948718936284	0	17.2858415877929						242	9	4	NaN	NaN	NaN	4.0041E-05	1	26318	71.219	65.191	1	49865			22076	248	18624	19155	22076	22076		
WVQDELHSVLGLSER	15	Unmodified	_WVQDELHSVLGLSER_			0	0	0	O60231	O60231	O60231	DHX16	Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	884.45485	1766.89515	2.0044	0.0017728	1.6754	0.0014818	3.6798	0.0032546	884.456495482468	14.365	0.079786	14.365	14.329	14.409	0	252	28	1.15595906938629	0.0179551284989976	1.15595906938629	466.610749194327	0	7.24770987371176						198	10	3	NaN	NaN	NaN	0.0043363	1	26320	29.98	24.886	1	43758			22077	248	18624	19155	22077	22077		
WVSSLAVHPAGDNVICGSYDSK	22	Unmodified	_WVSSLAVHPAGDNVICGSYDSK_			0	0	0	Q14137	Q14137	Q14137	BOP1	Ribosome biogenesis protein BOP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	788.042591	2361.10594	0.94899	0.00074785	-0.52316	-0.00041227	0.42584	0.00033558	788.37637307172	11.172	0.062069	11.172	11.146	11.208	0	561	46	0.948993180460448	0.0303660983099298	0.948993180460448	573.472579029857	0	18.3501052182695						257	8	4	NaN	NaN	NaN	0.0004793	1	36136	42.218	39.503	1	45619			22078	1723	18625	19156	22078	22078		
WVTFLLK	7	Unmodified	_WVTFLLK_			0	0	0	Q9NZM1	Q9NZM1	Q9NZM1	MYOF	Myoferlin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.776014	905.537475	-2.0154	-0.00091455	-0.59849	-0.00027158	-2.6139	-0.0011861	453.775869518326	15.109	0.12415	15.109	15.065	15.189	0	780	31	0.800512323802183	0.0204431578959955	0.800512323802183	325.514033797093	0	8.31284490246122						258	15	3	NaN	NaN	NaN	0.054411	1	2433	44.42	27.873	1	88550			22079	3136	18626	19157	22079	22079		
WVTTASLLDYDTVAGADK	18	Unmodified	_WVTTASLLDYDTVAGADK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.478188	1924.94182	1.1249	0.0010838	-0.1102	-0.00010618	1.0147	0.0009776	963.477517896894	15.482	0.071076	15.482	15.446	15.517	-1.7764E-15	99	82	1.25735632164274	0.0535117422086984	1.25735632164274	507.215861812897	0	21.5865653787253						423	9	4	NaN	NaN	NaN	1.06E-06	1	30174	98.865	89.709	1	89222			22080	1841	18627	19158	22080	22080		
WVTTASLLDYDTVAGADK	18	Unmodified	_WVTTASLLDYDTVAGADK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	963.478188	1924.94182	2.1508	0.0020722	0.23604	0.00022742	2.3868	0.0022996	963.979754704628	15.482	0.19521	15.482	15.375	15.571	0	222	55	1.17589687683038	0.0358683429143114	1.17589687683038	474.355229332125	0	14.4692416181455						601	23	3	NaN	NaN	NaN	2.6925E-19	1	30175	172.09	143.86	1	282270			22081	1841	18627	19158	22081	22081		
WVTYFNKPDIDAWELR	16	Unmodified	_WVTYFNKPDIDAWELR_			0	0	1	P20674	P20674	P20674	COX5A	Cytochrome c oxidase subunit 5A, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	685.01078	2052.01051	0.2027	0.00013885	-0.7822	-0.00053581	-0.57949	-0.00039696	685.344589823708	15.81	0.14189	15.81	15.766	15.908	0	687	142	0.863749705078866	0.0954246346421618	0.863749705078866	522.419790154354	0	57.7154670064544						1351	17	4	NaN	NaN	NaN	0.00021885	1	32566	98.865	86.283	1	443540			22082	783	18628	19159	22082	22082		
WVVIGDENYGEGSSR	15	Unmodified	_WVVIGDENYGEGSSR_			0	0	0	Q99798	Q99798	Q99798	ACO2	Aconitate hydratase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	834.386633	1666.75871	2.6986	0.0022517	-1.9487	-0.001626	0.74989	0.0006257	834.386371246026	10.853	0.2483	10.853	10.764	11.012	0	390	46	1.06389100039157	0.0301195105360905	1.06389100039157	429.647679728314	0	12.1636312475817						602	29	4	NaN	NaN	NaN	3.672E-06	1	23529	66.953	58.48	1	199160			22083	2674	18629	19160	22083	22083		
WVYPLTPEANFTDSTTQSCTHSR	23	Unmodified	_WVYPLTPEANFTDSTTQSCTHSR_			0	0	0	Q13144	Q13144	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	900.078253	2697.21293	2.1209	0.001909	3.0831	0.0027751	5.204	0.004684	900.416303729259	12.963	0.14189	12.963	12.893	13.034	0	291	40	1.12999890578964	0.0259923277309138	1.12999890578964	682.355698748051	0	15.6956018807133						203	17	4	NaN	NaN	NaN	0.00055857	1	37593	27.94	27.129	1	35322			22084	1633	18630	19161	22084	22084		
WWDIIDIQK	9	Unmodified	_WWDIIDIQK_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	608.821681	1215.62881	-0.61469	-0.00037424	1.5619	0.00095089	0.94717	0.00057666	608.821622185576	16.803	0.16846	16.803	16.732	16.901	0	597	43	0.924688525662974	0.0283790126462771	0.924688525662974	374.571713120109	0	11.4957362274523						425	20	3	NaN	NaN	NaN	0.048758	1	9901	43.734	36.584	1	162180			22085	1901	18631	19162	22085	22085		
WWDLDTQHCFK	11	Unmodified	_WWDLDTQHCFK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	512.562721	1534.66633	-1.6615	-0.0008516	-0.59658	-0.00030579	-2.258	-0.0011574	512.562243617729	11.89	0.097563	11.89	11.846	11.944	0	744	31	0.82502364452135	0.0204090624710167	0.82502364452135	500.124796565661	0	12.3718614420256						285	12	4	NaN	NaN	NaN	1.457E-05	1	19558	85.716	82.838	1	84845			22086	3308	18632	19163	22086	22086		
WWDLDTQHCFK	11	Unmodified	_WWDLDTQHCFK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	768.340443	1534.66633	0.96054	0.00073802	2.9378	0.0022572	3.8984	0.0029953	768.342731082631	11.899	0.13302	11.899	11.82	11.953	0	378	28	1.07192009927972	0.0180617378392283	1.07192009927972	433.197239712951	0	7.29932667708181						199	16	4	NaN	NaN	NaN	0.051114	1	19561	33.723	30.845	1	42053			22087	3308	18632	19163	22087	22087		
WWDNLNHLNQFVDHEK	16	Unmodified	_WWDNLNHLNQFVDHEK_			0	0	0	Q13907	Q13907	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	524.49997	2093.97077	-1.2008	-0.00062983	0.61637	0.00032329	-0.58445	-0.00030655	524.75091114208	13.221	0.088672	13.221	13.185	13.274	0	744	25	0.82502364452135	0.0163272492665953	0.82502364452135	665.237955711397	0	13.165084415007						193	11	4	NaN	NaN	NaN	0.013812	1	33236	49.097	47.622	1	58437			22088	1710	18633	19164	22088	22088		
WWDNLNHLNQFVDHEK	16	Unmodified	_WWDNLNHLNQFVDHEK_			0	0	0	Q13907	Q13907	Q13907	IDI1	Isopentenyl-diphosphate Delta-isomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.997534	2093.97077	0.63267	0.00044223	2.415	0.0016881	3.0477	0.0021303	699.670659095949	13.221	0.11527	13.221	13.185	13.3	0	555	58	0.953040030838688	0.0384158376205809	0.953040030838688	576.347482475265	0	23.231837680854						406	14	5	NaN	NaN	NaN	0.00012157	1	33237	73.891	70.997	1	119340			22089	1710	18633	19164	22089	22089		
WWEEERYPEGIK	12	Unmodified	_WWEEERYPEGIK_			0	0	1	P11387	P11387	P11387	TOP1	DNA topoisomerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.259696	1620.75726	-1.439	-0.0007789	-0.19149	-0.00010365	-1.6305	-0.00088254	541.259500009395	9.3987	0.1596	9.3987	9.3366	9.4962	0	810	85	0.78005493425781	0.0572488559052531	0.78005493425781	472.640674701177	0	34.6874773719288						1013	19	5	NaN	NaN	NaN	0.0016055	1	22208	81.335	67.537	1	424840			22090	651	18634	19165	22090	22090		
WWEQTDLTK	9	Unmodified	_WWEQTDLTK_			0	0	0	Q9H9A6	Q9H9A6	Q9H9A6	LRRC40	Leucine-rich repeat-containing protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	603.793121	1205.57169	0.90256	0.00054496	3.7278	0.0022509	4.6304	0.0027958	603.794556122374	10.152	0.079803	10.152	10.108	10.188	0	558	31	0.951016745717027	0.0202370558589571	0.951016745717027	385.27278173971	0	8.19836962925797						168	10	3	NaN	NaN	NaN	0.0032213	1	9616	69.716	44.865	1	37474			22091	2932	18635	19166	22091	22091		
WYDLEYSNEYSLK	13	Unmodified	_WYDLEYSNEYSLK_			0	0	0	Q03701	Q03701	Q03701	CEBPZ	CCAAT/enhancer-binding protein zeta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	855.38831	1708.76207	1.7857	0.0015275	4.6393	0.0039684	6.425	0.0054959	855.890494589769	13.283	0.097534	13.283	13.238	13.336	0	360	28	1.08395544855938	0.0180468052044267	1.08395544855938	437.661865161717	0	7.28664488607609						246	12	4	NaN	NaN	NaN	0.0049995	1	24714	39.293	32.916	1	49707			22092	1540	18636	19167	22092	22092		
WYEWLDPSIK	10	Unmodified	_WYEWLDPSIK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.832246	1335.64994	1.0005	0.00066918	0.061751	4.1301E-05	1.0623	0.00071048	668.832677569981	15.588	0.15074	15.588	15.526	15.677	0	513	46	0.981336640919867	0.0302905481075687	0.981336640919867	397.117411137772	0	12.257673406698						376	17	3	NaN	NaN	NaN	0.0074796	1	13458	49.16	40.686	1	123580			22093	2640	18637	19168	22093	22093		
WYFDVTEGK	9	Unmodified	_WYFDVTEGK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	572.769114	1143.52368	-0.11273	-6.4569E-05	-0.12762	-7.3097E-05	-0.24035	-0.00013767	572.768772071002	12.511	0.11528	12.511	12.467	12.582	0	651	31	0.888155670855968	0.0203213763976985	0.888155670855968	360.0275828255	0	8.2375829645938						221	14	3	NaN	NaN	NaN	0.052595	1	7876	29.31	23.562	1	54113			22094	523	18638	19169	22094	22094		
WYHPGCFVK	9	Unmodified	_WYHPGCFVK_			0	0	0	P09874	P09874	P09874	PARP1	Poly [ADP-ribose] polymerase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.281669	1192.54878	1.2524	0.00074803	4.0553	0.0024221	5.3076	0.0031702	597.284412063175	7.3585	0.27485	7.3585	7.2255	7.5003	0	615	52	0.912521036363781	0.0344960752489721	0.912521036363781	369.723207619265	0	13.9766636418024						607	32	3	NaN	NaN	NaN	0.00062466	1	9221	84.699	65.443	1	294170			22095	611	18639	19170	22095	22095		
WYLENVYPELR	11	Unmodified	_WYLENVYPELR_			0	0	0	Q10471	Q10471	Q10471	GALNT2	Polypeptide N-acetylgalactosaminyltransferase 2;Polypeptide N-acetylgalactosaminyltransferase 2 soluble form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.374809	1480.73507	1.2979	0.00096224	-1.0933	-0.00081054	0.20463	0.0001517	741.374143066148	15.393	0.3016	15.393	15.278	15.579	0	441	55	1.02971785871157	0.0362158044532401	1.02971785871157	416.277450098668	0	14.6407315397349						879	35	5	NaN	NaN	NaN	3.4923E-08	1	17923	126.29	101.04	1	478350			22096	1586	18640	19171	22096	22096		
WYMQFDDDEK	10	Unmodified	_WYMQFDDDEK_			0	0	0	P53680	P53680	P53680	AP2S1	AP-2 complex subunit sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	688.77681	1375.53907	1.1571	0.00079695	1.4368	0.00098966	2.5939	0.0017866	688.777839532723	11.465	0.12417	11.465	11.42	11.545	0	468	31	1.01159370163332	0.0201532590468485	1.01159370163332	409.239935569536	0	8.15299504191455						271	15	4	NaN	NaN	NaN	0.0011431	1	14657	61.48	51.966	1	66943			22097	1243	18641	19172	22097	22097		
WYPEEYEFAPK	11	Unmodified	_WYPEEYEFAPK_			0	0	0	Q9Y3B8	Q9Y3B8	Q9Y3B8	REXO2	Oligoribonuclease, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	729.832443	1457.65033	0.83033	0.000606	3.131	0.0022851	3.9613	0.0028911	729.834451235469	12.103	0.1419	12.103	12.041	12.183	0	450	67	1.02367897599655	0.0443433168599838	1.02367897599655	413.896807943766	0	17.9290165494697						480	17	4	NaN	NaN	NaN	0.0084342	1	17172	43.272	35.271	1	142910			22098	3381	18642	19173	22098	22098		
WYVVQTNYDR	10	Unmodified	_WYVVQTNYDR_			0	0	0	Q13510	Q13510	Q13510	ASAH1	Acid ceramidase;Acid ceramidase subunit alpha;Acid ceramidase subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	672.322576	1342.6306	1.0723	0.00072092	1.0762	0.00072356	2.1485	0.0014445	672.323881093662	9.5849	0.11527	9.5849	9.5317	9.647	0	516	28	0.979317271586824	0.0181768396345002	0.979317271586824	396.279127577186	0	7.35522834269915						185	14	2	NaN	NaN	NaN	0.0094968	1	13685	33.426	27.163	1	63324			22099	1676	18643	19174	22099	22099		
WYYNAAGFNK	10	Unmodified	_WYYNAAGFNK_			0	0	0	P14927	P14927	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.288005	1232.56146	1.3606	0.00083986	0.60866	0.00037572	1.9692	0.0012156	617.287525022133	9.6913	0.13303	9.6913	9.647	9.78	0	588	34	0.93076847747433	0.0222931596374992	0.93076847747433	376.976425479231	0	9.02909352451093						367	16	4	NaN	NaN	NaN	0.00027156	1	10380	105.04	93.68	1	113920			22100	707	18644	19175	22100	22100		
YAACNAVGQMATDFAPGFQK	20	Unmodified	_YAACNAVGQMATDFAPGFQK_			0	0	0	O00410	O00410	O00410	IPO5	Importin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.98787	2145.9612	1.5623	0.0016779	0.77097	0.00082801	2.3332	0.0025059	1074.4903634517	14.568	0.079783	14.568	14.524	14.604	0	138	67	1.23157729878518	0.0436709335285115	1.23157729878518	496.450237582412	0	17.6038039569751						394	10	3	NaN	NaN	NaN	5.8823E-06	1	33962	59.77	57.923	1	67076			22101	74	18645	19176	22101	22101		
YAALSVDGEDENEGEDYAE	19	Unmodified	_YAALSVDGEDENEGEDYAE_			0	0	0	P23588	P23588	P23588	EIF4B	Eukaryotic translation initiation factor 4B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.41364	2074.81272	2.5033	0.0025995	-1.1695	-0.0012144	1.3338	0.0013851	1038.91406616519	10.853	0.14189	10.853	10.809	10.95	0	237	109	1.16593139812432	0.071697360550536	1.16593139812432	470.091934400194	0	28.9076621204396						851	17	5	NaN	NaN	NaN	7.931E-21	1	32940	220.34	215.79	1	196490			22102	824	18646	19177	22102	22102		
YAALYQPLFDK	11	Unmodified	_YAALYQPLFDK_			0	0	0	Q99733	Q99733	Q99733	NAP1L4	Nucleosome assembly protein 1-like 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.847896	1327.68124	0.68633	0.00045631	1.1359	0.00075519	1.8222	0.0012115	664.848226506119	13.354	0.13307	13.354	13.3	13.434	0	507	37	0.985374541851584	0.0242240595168645	0.985374541851584	398.775931940092	0	9.80335040020231						290	16	3	NaN	NaN	NaN	0.00025744	1	13219	69.915	59.827	1	102170			22103	2670	18647	19178	22103	22103		
YAAPEQNNDPQQSK	14	Unmodified	_YAAPEQNNDPQQSK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	795.363158	1588.71176	2.3713	0.0018861	-2.0086	-0.0015976	0.36273	0.0002885	795.361731344168	2.8449	0.070922	2.8449	2.8183	2.8892	0	510	55	0.983355730988811	0.0363109867512514	0.983355730988811	397.284675342156	0	14.6699695015947						192	9	2	NaN	NaN	NaN	8.6391E-05	1	21229	78.864	77.812	1	40573			22104	2329	18648	19179	22104	22104		
YADALQEIIQER	12	Unmodified	_YADALQEIIQER_			0	0	0	Q9Y6N5	Q9Y6N5	Q9Y6N5	SQRDL	Sulfide:quinone oxidoreductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	724.87263	1447.73071	1.097	0.00079517	-1.0886	-0.0007891	0.0083615	6.0611E-06	724.872714850898	14.134	0.1596	14.134	14.072	14.232	0	462	49	1.01562323939346	0.0322229556332772	1.01562323939346	410.666158992993	0	13.0293172783466						341	19	3	NaN	NaN	NaN	5.7122E-05	1	16918	70.195	61.721	1	124240			22105	3473	18649	19180	22105	22105		
YADLLLEK	8	Unmodified	_YADLLLEK_			0	0	0	Q99459	Q99459	Q99459	CDC5L	Cell division cycle 5-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.771126	963.527698	0.607	0.00029304	1.5663	0.00075615	2.1733	0.0010492	482.770609400282	9.8332	0.18619	9.8332	9.78	9.9662	0	699	40	0.85560534332665	0.0264783729728815	0.85560534332665	347.603635673751	0	10.7572711927131						320	22	3	NaN	NaN	NaN	0.0033963	1	3511	60.589	48.523	1	101990			22106	2640	18650	19181	22106	22106		
YADLTEDQLPSCESLK	16	Unmodified	_YADLTEDQLPSCESLK_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.624263	1867.85096	0.29935	0.00018668	-0.72927	-0.00045479	-0.42992	-0.00026811	623.624059910145	10.764	0.15074	10.764	10.72	10.871	0	711	61	0.847456455381371	0.0407331407465505	0.847456455381371	512.904331167432	0	24.6528351731729						588	18	5	NaN	NaN	NaN	0.00010944	1	28873	77.157	69.581	1	196400			22107	757	18651	19182	22107	22107		
YADLTEDQLPSCESLK	16	Unmodified	_YADLTEDQLPSCESLK_			0	0	0	P18669	P18669	P18669	PGAM1	Phosphoglycerate mutase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.932756	1867.85096	2.9332	0.0027423	-0.52204	-0.00048807	2.4111	0.0022543	934.932570998379	10.764	0.27488	10.764	10.684	10.959	0	234	154	1.16792504164217	0.101900064000636	1.16792504164217	471.242455692632	0	41.1153410388201						2809	32	7	NaN	NaN	NaN	1.4993E-17	1	28875	165.72	147.99	1	2883500			22108	757	18651	19182	22108	22108		
YAEAVTR	7	Unmodified	_YAEAVTR_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	405.211235	808.407917	-0.84865	-0.00034388	1.0098	0.00040918	0.16114	6.5295E-05	405.211655320761	2.5079	0.40792	2.5079	2.4813	2.8892	0	834	31	0.763668499782291	0.0204944614564727	0.763668499782291	311.088840239414	0	8.34864636637894						459	47	3	NaN	NaN	NaN	0.0040474	1	1061	104.76	70.951	1	89023			22109	484	18652	19183	22109	22109		
YAEEQQDLALLSISTFQR	18	Unmodified	_YAEEQQDLALLSISTFQR_			0	0	0	O00203;Q13367	O00203	O00203	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1056.53403	2111.0535	0.36378	0.00038435	-1.0559	-0.0011156	-0.69214	-0.00073127	1057.03476094449	16.839	0.097501	16.839	16.785	16.883	0	135	25	1.23356193185193	0.0158738007995889	1.23356193185193	497.303124957514	0	6.39942798067494						222	12	4	NaN	NaN	NaN	7.9597E-07	1	33476	81.578	77.271	1	51056			22110	61	18653	19184	22110	22110		
YAEIVHLTLPDGTK	14	Unmodified	_YAEIVHLTLPDGTK_			0	0	0	P21281	P21281	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	519.615479	1555.82461	-0.55274	-0.00028721	-0.34499	-0.00017926	-0.89773	-0.00046647	519.61504505778	11.793	0.15075	11.793	11.713	11.864	0	714	46	0.845418525735192	0.030568952954407	0.845418525735192	512.425828215473	0	18.5284809340082						490	18	3	NaN	NaN	NaN	0.022487	1	20237	50.116	47.014	1	135740			22111	789	18654	19185	22111	22111		
YAEIVHLTLPDGTK	14	Unmodified	_YAEIVHLTLPDGTK_			0	0	0	P21281	P21281	P21281	ATP6V1B2	V-type proton ATPase subunit B, brain isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.919581	1555.82461	1.7886	0.0013931	-0.24576	-0.00019142	1.5428	0.0012017	778.919412674475	11.793	0.15963	11.793	11.704	11.864	0	348	31	1.09197348738011	0.0200395758714129	1.09197348738011	441.247811685106	0	8.0976498995168						443	19	4	NaN	NaN	NaN	6.3161E-08	1	20240	78.864	70.863	1	106770			22112	789	18654	19185	22112	22112		
YAELLEEHR	9	Unmodified	_YAELLEEHR_			0	0	0	P40222	P40222	P40222	TXLNA	Alpha-taxilin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.290745	1158.56694	1.5906	0.000923	5.325	0.0030901	6.9156	0.0040131	580.794673976593	5.7002	0.46996	5.7002	5.4076	5.8775	0	600	55	0.922661313351899	0.0365075402693392	0.922661313351899	373.957086635622	0	14.796603262532						649	54	3	NaN	NaN	NaN	7.3668E-06	1	8315	113.7	80.302	1	222680			22113	1015	18655	19186	22113	22113		
YAELSEEDLK	10	Unmodified	_YAELSEEDLK_			0	0	0	Q4G0N4	Q4G0N4	Q4G0N4	NADK2	NAD kinase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	598.787701	1195.56085	1.086	0.00065031	2.6518	0.0015879	3.7378	0.0022382	598.789061183879	7.3231	0.070938	7.3231	7.2964	7.3674	0	555	37	0.953040030838688	0.0242811063417099	0.953040030838688	386.129037421003	0	9.83761428257191						148	9	3	NaN	NaN	NaN	0.070087	1	9306	18.336	6.9763	1	33032			22114	1941	18656	19187	22114	22114		
YAETFLEPWFK	11	Unmodified	_YAETFLEPWFK_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	715.853178	1429.6918	0.81429	0.00058291	1.2248	0.00087676	2.0391	0.0014597	715.853972340634	17.335	0.14188	17.335	17.291	17.433	0	423	34	1.04178812298108	0.0221181322684503	1.04178812298108	421.296195599239	0	8.9445106667128						371	17	4	NaN	NaN	NaN	1.3818E-07	1	16375	117.3	98.963	1	106140			22115	3103	18657	19188	22115	22115		
YAFGQETNVPLNNFSADQVTR	21	Unmodified	_YAFGQETNVPLNNFSADQVTR_			0	0	0	O43678	O43678	O43678	NDUFA2	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1186.0693	2370.12404	1.2936	0.0015343	-1.1028	-0.001308	0.19081	0.00022631	1186.56987933259	13.629	0.053223	13.629	13.593	13.646	0	99	46	1.25735632164274	0.0297083716264817	1.25735632164274	506.533402437593	0	11.9681925495723						210	7	3	NaN	NaN	NaN	0.00077101	1	36210	65.724	57.856	1	37744			22116	218	18658	19189	22116	22116		
YAFVNWINK	9	Unmodified	_YAFVNWINK_			0	0	0	P13797;P13796	P13797	P13797	PLS3;LCP1	Plastin-3;Plastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.803291	1153.59203	-0.44592	-0.00025765	-8.7142	-0.0050351	-9.1601	-0.0052927	578.298697276685	13.407	0.026595	13.407	13.389	13.416	0	636	4	0.898312834727904	0.00203086923404749	0.898312834727904	364.107114084202	0	0.823158600550812						11	4	2	NaN	NaN	NaN	0.0010116	1	8159	78.178	53.327	1	2132.7			22117	683	18659	19190	22117	22117		
YAFVNWINK	9	Unmodified	_YAFVNWINK_			0	0	0	P13797;P13796	P13797	P13797	PLS3;LCP1	Plastin-3;Plastin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.803291	1153.59203	0.23879	0.00013797	-0.53302	-0.00030798	-0.29423	-0.00017	577.802959859755	13.451	0.17735	13.451	13.398	13.575	0	621	61	0.908462957275599	0.0405695604489756	0.908462957275599	368.221159505036	0	16.4437861439402						672	21	4	NaN	NaN	NaN	1.8403E-05	1	8161	140.12	108.16	1	385230			22118	683	18659	19190	22118	22118		
YAGSALQYEDVSTAVQNLQK	20	Unmodified	_YAGSALQYEDVSTAVQNLQK_			0	0	0	Q9NP79	Q9NP79	Q9NP79	VTA1	Vacuolar protein sorting-associated protein VTA1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1093.04221	2184.06988	0.74419	0.00081343	0.18568	0.00020296	0.92987	0.0010164	1093.54381876541	13.682	0.13298	13.682	13.646	13.779	0	117	82	1.24546401832526	0.0535484215609205	1.24546401832526	501.991653682346	0	21.5830086585655						536	16	4	NaN	NaN	NaN	7.5782E-16	1	34509	114.5	98.973	1	113820			22119	2979	18660	19191	22119	22119		
YAHQSGFHVDR	11	Unmodified	_YAHQSGFHVDR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	439.542537	1315.60578	-1.5025	-0.00066042	3.0917	0.0013589	1.5892	0.00069853	439.543641683459	2.8183	0.11526	2.8183	2.774	2.8892	0	807	22	0.782101955086014	0.0143271514943355	0.782101955086014	474.809966406802	0	8.6979380060269						146	14	3	NaN	NaN	NaN	0.030301	1	12823	36.514	32.311	1	29713			22120	1036	18661	19192	22120	22120		
YAHVVLR	7	Unmodified	_YAHVVLR_			0	0	0	P62269	P62269	P62269	RPS18	40S ribosomal protein S18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	429.253237	856.491922	-0.21774	-9.3466E-05	1.6977	0.00072873	1.4799	0.00063526	429.254049337544	3.5898	0.088636	3.5898	3.5544	3.6431	0	762	28	0.812773098473386	0.018384767783428	0.812773098473386	330.782202007675	0	7.48222841310144						191	11	3	NaN	NaN	NaN	0.0064306	1	1657	97.926	75.998	1	78759			22121	1378	18662	19193	22121	22121		
YAHWVVSQPPDTYLK	15	Unmodified	_YAHWVVSQPPDTYLK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.973667	1802.89917	0.75467	0.00045429	0.091919	5.5333E-05	0.84659	0.00050962	602.308037146225	10.995	0.31034	10.995	10.791	11.101	0	636	52	0.898312834727904	0.0345295780335751	0.898312834727904	543.828247546779	0	20.903808990124						1141	36	5	NaN	NaN	NaN	0.018201	1	27289	70.389	57.214	1	339440			22122	2448	18663	19194	22122	22122		
YAHWVVSQPPDTYLK	15	Unmodified	_YAHWVVSQPPDTYLK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.456862	1802.89917	2.171	0.0019592	-0.39807	-0.00035924	1.7729	0.0016	902.456994172033	10.986	0.10641	10.986	10.95	11.057	0	303	31	1.12200181823275	0.0200009774591183	1.12200181823275	452.83325362818	0	8.07227542003642						179	13	2	NaN	NaN	NaN	0.039408	1	27292	27.378	20.171	1	44565			22123	2448	18663	19194	22123	22123		
YAILNEPFK	9	Unmodified	_YAILNEPFK_			0	0	0	Q14839	Q14839	Q14839	CHD4	Chromodomain-helicase-DNA-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.797675	1093.5808	0.99883	0.00054716	-0.2954	-0.00016182	0.70343	0.00038534	547.797307571582	11.287	0.11531	11.287	11.243	11.358	0	588	49	0.93076847747433	0.0324286658287691	0.93076847747433	377.506564821358	0	13.1526094136509						407	14	3	NaN	NaN	NaN	0.00015433	1	6548	90.308	70.821	1	126490			22124	1776	18664	19195	22124	22124		
YAIQLITAASLVCR	14	Unmodified	_YAIQLITAASLVCR_			0	0	0	Q9Y230	Q9Y230	Q9Y230	RUVBL2	RuvB-like 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.93725	1577.85995	0.81091	0.00064057	1.4099	0.0011137	2.2208	0.0017543	789.938449807816	16.413	0.11526	16.413	16.386	16.502	0	234	34	1.16792504164217	0.0219330958171067	1.16792504164217	471.880388061178	0	8.86169693819289						211	14	3	NaN	NaN	NaN	1.0013E-05	1	20917	90.142	77.547	1	41440			22125	3325	18665	19196	22125	22125		
YALTGDEVK	9	Unmodified	_YALTGDEVK_			0	0	0	P62701;Q8TD47;P22090	P62701	P62701	RPS4X;RPS4Y2;RPS4Y1	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, Y isoform 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.25584	994.497126	1.6616	0.00082788	-0.25087	-0.000125	1.4107	0.00070288	498.255944135063	5.5849	0.42565	5.5849	5.4873	5.913	0	615	100	0.912521036363781	0.0670280689006512	0.912521036363781	370.564115563936	0	27.2193144928513						1070	49	4	NaN	NaN	NaN	0.0010834	1	4152	58.426	44.874	1	897040			22126	1394	18666	19197	22126	22126		
YALYDASFETK	11	Unmodified	_YALYDASFETK_			0	0	0	P60981	P60981	P60981	DSTN	Destrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.311343	1306.60813	1.7804	0.0011649	0.40805	0.00026699	2.1884	0.0014319	654.312739569478	10.445	0.25716	10.445	10.268	10.525	0	516	82	0.979317271586824	0.0545758442821291	0.979317271586824	396.39042443425	0	22.0902282707598						1011	30	4	NaN	NaN	NaN	0.00013899	1	12545	78.932	72.241	1	507250			22127	1317	18667	19198	22127	22127		
YALYDATYETK	11	Unmodified	_YALYDATYETK_			0	0	0	P23528;Q9Y281	P23528;Q9Y281	P23528	CFL1;CFL2	Cofilin-1;Cofilin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.316625	1336.6187	2.0849	0.0013954	2.2347	0.0014957	4.3195	0.0028911	669.318251536345	8.4672	0.60334	8.4672	8.3608	8.9642	0	492	94	0.995464410099171	0.0625745549388077	0.995464410099171	402.831495270399	0	25.3218510638351						2080	69	6	NaN	NaN	NaN	3.8592E-05	1	13485	127.94	103.12	1	3926900			22128	823;3335	18668	19199	22128	22128		
YANMWLEYYNLER	13	Unmodified	_YANMWLEYYNLER_			0	0	0	Q15020	Q15020	Q15020	SART3	Squamous cell carcinoma antigen recognized by T-cells 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	882.906147	1763.79774	2.0262	0.0017889	9.6279	0.0085005	11.654	0.010289	882.91440489511	16.111	0.20396	16.111	16.005	16.209	0	309	37	1.11800162319566	0.0240077828755938	1.11800162319566	451.295109933514	0	9.69103692455445						564	24	4	NaN	NaN	NaN	0.070353	1	26236	27.378	22.561	1	119380			22129	1793	18669	19200	22129	22129		
YANVIAYDHSR	11	Unmodified	_YANVIAYDHSR_			0	0	0	P10586;P23468;Q13332	P10586	P10586	PTPRF;PTPRD;PTPRS	Receptor-type tyrosine-protein phosphatase F;Receptor-type tyrosine-protein phosphatase delta;Receptor-type tyrosine-protein phosphatase S	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.820201	1307.62585	2.2105	0.0014475	-0.94311	-0.00061756	1.2674	0.00082992	654.819738269136	5.1504	0.070937	5.1504	5.1238	5.1947	0	483	25	1.00151498427745	0.0161315207878521	1.00151498427745	405.371919832582	0	6.52937365316467						103	9	2	NaN	NaN	NaN	2.0303E-05	1	12579	99.855	42.823	1	28171			22130	627	18670	19201	22130	22130		
YAPLHLVPLIER	12	Unmodified	_YAPLHLVPLIER_			0	0	0	Q7L576;Q96F07	Q7L576	Q7L576	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.281883	1419.82382	-1.5252	-0.00072336	-1.802	-0.00085463	-3.3271	-0.001578	474.281009377771	13.54	0.070944	13.54	13.513	13.584	0	804	43	0.78414869089473	0.0286403486921881	0.78414869089473	475.689733916453	0	17.3741536609801						156	9	2	NaN	NaN	NaN	0.026078	1	16100	50.297	45.757	1	32865			22131	2117	18671	19202	22131	22131		
YAPLHLVPLIER	12	Unmodified	_YAPLHLVPLIER_			0	0	0	Q7L576;Q96F07	Q7L576	Q7L576	CYFIP1;CYFIP2	Cytoplasmic FMR1-interacting protein 1;Cytoplasmic FMR1-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	710.919187	1419.82382	2.1855	0.0015537	-0.83418	-0.00059304	1.3513	0.00096069	710.918761444167	13.558	0.12415	13.558	13.504	13.629	0	435	37	1.03374239103424	0.0241405316442127	1.03374239103424	418.070371242777	0	9.76301360380194						348	15	3	NaN	NaN	NaN	0.062695	1	16101	19.324	17.68	1	102040			22132	2117	18671	19202	22132	22132		
YAPSEAGLHEMDIR	14	Unmodified	_YAPSEAGLHEMDIR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	794.874847	1587.73514	2.9052	0.0023093	-0.94189	-0.00074868	1.9633	0.0015606	794.873948917266	8.077	0.16857	8.077	8.0148	8.1833	0	339	43	1.09798411722691	0.0280515443878693	1.09798411722691	443.597941740844	0	11.3331396673919						523	20	5	NaN	NaN	NaN	0.0011799	1	21193	89.382	67.24	1	196440			22133	792	18672	19203	22133	22133		
YAPSGFYIASGDVSGK	16	Unmodified	_YAPSGFYIASGDVSGK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.89102	1617.76749	2.8401	0.0023002	-2.6168	-0.0021193	0.2233	0.00018085	809.888489010096	10.871	0.15076	10.871	10.817	10.968	0	405	73	1.05384839605172	0.0481879139637287	1.05384839605172	425.698266224619	0	19.4653343917352						762	18	4	NaN	NaN	NaN	2.53E-12	1	22127	135.21	119.33	1	252070			22134	300	18673	19204	22134	22134		
YAPSGFYIASGDVSGK	16	Unmodified	_YAPSGFYIASGDVSGK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	809.89102	1617.76749	2.6371	0.0021357	-1.1321	-0.0009169	1.5049	0.0012188	809.890655218511	10.871	0.062091	10.871	10.835	10.897	0	264	43	1.14797626962532	0.0279551776858049	1.14797626962532	463.720876086297	0	11.2923932581294						148	8	3	NaN	NaN	NaN	0.0027074	1	22129	37.146	32.618	1	25565			22135	300	18673	19204	22135	22135		
YAPTEAQLNAVDALIDSMSLAK	22	Unmodified	_YAPTEAQLNAVDALIDSMSLAK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1161.08831	2320.16206	-0.29432	-0.00034173	-1.1392	-0.0013228	-1.4336	-0.0016645	1162.08875960447	20.031	0.026599	20.031	20.013	20.04	0	63	28	1.28111162701928	0.0178079416067196	1.28111162701928	516.168163753959	0	7.17493489678549						77	4	5	NaN	NaN	NaN	0.064531	1	35822	23.53	19.68	1	13432			22136	674	18674	19205	22136	22136		
YAPTEAQLNAVDALIDSMSLAK	22	Unmodified	_YAPTEAQLNAVDALIDSMSLAK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	774.394631	2320.16206	0.41575	0.00032195	-0.31904	-0.00024706	0.096705	7.4888E-05	774.728065234837	20.031	0.017739	20.031	20.031	20.049	0	468	22	1.01159370163332	0.0141063059336848	1.01159370163332	611.36488883318	0	8.52526082860106						63	3	5	NaN	NaN	NaN	0.061386	1	35823	17.813	14.738	1	15842			22137	674	18674	19205	22137	22137		
YAPTEVGLHEMHIK	14	Unmodified	_YAPTEVGLHEMHIK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	542.276581	1623.80791	1.0768	0.0005839	-1.0827	-0.00058711	-0.0059173	-3.2088E-06	542.275993793947	7.6688	0.11532	7.6688	7.6245	7.7398	0	708	34	0.849494101904619	0.0224110012963066	0.849494101904619	514.706165402188	0	13.5787647191229						320	14	4	NaN	NaN	NaN	0.00014173	1	22306	81.799	65.147	1	122170			22138	326	18675	19206	22138	22138		
YAPTEVGLHEMHIK	14	Unmodified	_YAPTEVGLHEMHIK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	812.911233	1623.80791	3.5336	0.0028725	-2.0203	-0.0016423	1.5133	0.0012302	812.909779224664	7.6688	0.097597	7.6688	7.6334	7.7309	0	273	37	1.14198628764525	0.0239714689101356	1.14198628764525	461.286679291579	0	9.6828827201582						252	12	4	NaN	NaN	NaN	1.0103E-05	1	22307	92.707	81.92	1	71594			22139	326	18675	19206	22139	22139		
YASETLQAQSEEAR	14	Unmodified	_YASETLQAQSEEAR_			0	0	0	Q9ULR0	Q9ULR0	Q9ULR0	ISY1	Pre-mRNA-splicing factor ISY1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.870816	1581.72708	2.4013	0.0019015	-3.0236	-0.0023943	-0.62235	-0.00049282	791.868434354706	4.7603	0.11528	4.7603	4.7248	4.8401	0	450	34	1.02367897599655	0.0221456308390058	1.02367897599655	413.591419630534	0	8.94737814499081						218	14	4	NaN	NaN	NaN	3.4657E-17	1	21018	150.44	142.89	1	52733			22140	3278	18676	19207	22140	22140		
YASFQVENDQER	12	Unmodified	_YASFQVENDQER_			0	0	0	P53992	P53992	P53992	SEC24C	Protein transport protein Sec24C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	743.333869	1484.65319	1.713	0.0012733	-0.71193	-0.0005292	1.001	0.00074411	743.333178517624	6.2234	0.24831	6.2234	6.1436	6.3919	0	465	43	1.01360860968299	0.0282145658973765	1.01360860968299	409.755053087625	0	11.4058432778501						350	29	4	NaN	NaN	NaN	4.3029E-08	1	18042	132.44	121.08	1	98842			22141	1247	18677	19208	22141	22141		
YASICQQNGIVPIVEPEILPDGDHDLK	27	Unmodified	_YASICQQNGIVPIVEPEILPDGDHDLK_			0	0	0	P04075;P09972	P04075;P09972	P04075	ALDOA;ALDOC	Fructose-bisphosphate aldolase A;Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1007.50597	3019.49609	2.0547	0.0020701	-0.15834	-0.00015953	1.8964	0.0019106	1007.84027131396	15.757	0.097551	15.757	15.712	15.81	0	300	220	1.12400150285141	0.146279734096844	1.12400150285141	678.362492702696	0	88.2834095880569						2443	12	5	NaN	NaN	NaN	3.9834E-15	1	38258	115.15	111.1	1	564620			22142	504;615	18678	19209	22142	22142		
YASSANLHLPK	11	Unmodified	_YASSANLHLPK_			0	0	0	CON__P34955	CON__P34955	CON__P34955			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	600.822212	1199.62987	1.5525	0.00093278	0.9627	0.00057841	2.5152	0.0015112	600.822505695222	5.7711	0.15071	5.7711	5.7002	5.8509	0	516	40	0.979317271586824	0.0262518066023084	0.979317271586824	396.76004812806	0	10.635642149049						303	18	3	NaN	NaN	NaN	0.0050055	1	9455	76.572	60.99	1	67164		+	22143	32	18679	19210	22143	22143		
YATALYSAASK	11	Unmodified	_YATALYSAASK_			0	0	0	P48047	P48047	P48047	ATP5O	ATP synthase subunit O, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.295496	1144.57644	1.0313	0.00059126	-1.6228	-0.00093033	-0.59144	-0.00033907	573.295161049371	5.9485	0.12421	5.9485	5.8953	6.0195	0	648	34	0.890187667287968	0.0223488632159498	0.890187667287968	360.847335858764	0	9.05935686069063						211	15	3	NaN	NaN	NaN	0.0033317	1	7917	47.334	33.686	1	85467			22144	1104	18680	19211	22144	22144		
YATDTFAGLCHQLTNALVER	20	Unmodified	_YATDTFAGLCHQLTNALVER_			0	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	760.707432	2279.10047	0.068903	5.2415E-05	-1.5513	-0.0011801	-1.4824	-0.0011277	761.040559391118	16.67	0.13301	16.67	16.608	16.741	0	591	34	0.928742107665821	0.0222900711025618	0.928742107665821	561.353018037583	0	13.4726298963044						425	16	5	NaN	NaN	NaN	1.1835E-11	1	35455	127.07	124.68	1	130080			22145	3306	18681	19212	22145	22145		
YAVDDVQYVDEIASVLTSQK	20	Unmodified	_YAVDDVQYVDEIASVLTSQK_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.05753	2242.10051	0.70066	0.00078619	-0.36186	-0.00040602	0.33881	0.00038016	1122.55892836461	19.889	0.070957	19.889	19.871	19.942	0	78	46	1.27121832677567	0.0297002348948376	1.27121832677567	512.288257344484	0	11.9688972826483						260	9	5	NaN	NaN	NaN	1.3478E-05	1	35116	66.66	61.578	1	69914			22146	672	18682	19213	22146	22146		
YAVDDVQYVDEIASVLTSQK	20	Unmodified	_YAVDDVQYVDEIASVLTSQK_			0	0	0	P12955	P12955	P12955	PEPD	Xaa-Pro dipeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	748.374113	2242.10051	0.48546	0.0003633	0.37181	0.00027825	0.85726	0.00064155	748.708412825728	19.889	0.05321	19.889	19.871	19.924	0	477	25	1.0055473068722	0.0161270627425241	1.0055473068722	607.83656074279	0	9.74854020820817						110	7	4	NaN	NaN	NaN	1.2815E-05	1	35117	71.935	66.593	1	35962			22147	672	18682	19213	22147	22147		
YAVGEECDFEVGK	13	Unmodified	_YAVGEECDFEVGK_			0	0	0	Q9UIG0	Q9UIG0	Q9UIG0	BAZ1B	Tyrosine-protein kinase BAZ1B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	751.827031	1501.63951	1.5269	0.001148	3.6627	0.0027537	5.1895	0.0039016	751.829187923843	8.9198	0.14203	8.9198	8.8842	9.0262	0	438	58	1.03173026378327	0.0382040575606513	1.03173026378327	417.037210345428	0	15.4425184064553						215	17	2	NaN	NaN	NaN	0.00090275	1	18560	73.655	62.299	1	73785			22148	3238	18683	19214	22148	22148		
YAVIPLSTNSGLIGWVPHCDTLHALIR	27	Unmodified	_YAVIPLSTNSGLIGWVPHCDTLHALIR_			0	0	0	P42345	P42345	P42345	MTOR	Serine/threonine-protein kinase mTOR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	751.652284	3002.58003	-0.55019	-0.00041355	1.4405	0.0010827	0.89027	0.00066917	752.155764892234	18.195	0.035482	18.195	18.186	18.222	0	483	10	1.00151498427745	0.00604890189157015	1.00151498427745	805.938070591483	0	4.86766588240948						28	5	3	NaN	NaN	NaN	0.061285	1	38231	2.1856	2.1856	1	4225.3			22149	1049	18684	19215	22149	22149		
YAVLYQPLFDK	11	Unmodified	_YAVLYQPLFDK_			0	0	0	P55209	P55209	P55209	NAP1L1	Nucleosome assembly protein 1-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.863546	1355.71254	1.7657	0.0011987	-0.89619	-0.00060839	0.86953	0.00059029	678.863617351631	14.267	0.26598	14.267	14.196	14.462	1.7764E-15	483	97	1.00151498427745	0.0644726826051844	1.00151498427745	405.221557287973	0	26.0862006639417						1132	31	5	NaN	NaN	NaN	4.1253E-12	1	14065	147.78	130.05	1	1314500			22150	1269	18685	19216	22150	22150		
YAYYDTER	8	Unmodified	_YAYYDTER_			0	0	0	O00303	O00303	O00303	EIF3F	Eukaryotic translation initiation factor 3 subunit F	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.735271	1079.45599	1.8466	0.00099852	0.76175	0.0004119	2.6083	0.0014104	540.73556213336	4.6539	0.15073	4.6539	4.6095	4.7603	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	372.634303972594	0	8.22627624237231						271	18	3	NaN	NaN	NaN	0.0015962	1	6192	97.033	84.206	1	102620			22151	72	18686	19217	22151	22151		
YCALLLPLLK	10	Unmodified	_YCALLLPLLK_			0	0	0	Q13144	Q13144	Q13144	EIF2B5	Translation initiation factor eIF-2B subunit epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	602.362127	1202.7097	0.33897	0.00020418	-1.4348	-0.00086426	-1.0958	-0.00066008	602.361413799531	17.787	0.133	17.787	17.734	17.867	0	573	37	0.940896116921038	0.0242945584092671	0.940896116921038	381.183033032615	0	9.84239736362912						268	16	3	NaN	NaN	NaN	0.0058706	1	9556	49.325	43.062	1	72992			22152	1633	18687	19218	22152	22152		
YCDHENAAFK	10	Unmodified	_YCDHENAAFK_			0	0	0	Q5JTV8;Q8NFQ8	Q5JTV8;Q8NFQ8	Q5JTV8	TOR1AIP1;TOR1AIP2	Torsin-1A-interacting protein 1;Torsin-1A-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.764037	1253.51352	1.8735	0.0011761	-1.5954	-0.0010016	0.27805	0.00017455	627.762900503875	2.836	0.10642	2.836	2.8094	2.9158	0	606	25	0.918606045818476	0.0162233196109728	0.918606045818476	371.981567489967	0	6.56949285958973						155	13	3	NaN	NaN	NaN	0.0025789	1	11009	76.572	44.432	1	26982			22153	1970;2320	18688	19219	22153	22153		
YCDPDSYHR	9	Unmodified	_YCDPDSYHR_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	404.829467	1211.46657	-0.75769	-0.00030674	1.0387	0.0004205	0.28102	0.00011376	404.829893765449	2.8538	0.23941	2.8538	2.8006	3.04	0	858	28	0.747263789720611	0.018464305033006	0.747263789720611	454.064337992716	0	11.2195754118396						381	28	4	NaN	NaN	NaN	0.00072523	1	9766	58.286	57.58	1	103470			22154	850	18689	19220	22154	22154		
YCDPDSYHR	9	Unmodified	_YCDPDSYHR_			0	0	0	P26368	P26368	P26368	U2AF2	Splicing factor U2AF 65 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	606.740562	1211.46657	1.292	0.00078388	1.8838	0.0011429	3.1757	0.0019268	606.741998645465	2.8538	0.18621	2.8538	2.8094	2.9956	0	648	43	0.890187667287968	0.0284380921957725	0.890187667287968	360.610053013274	0	11.5201123439025						339	22	3	NaN	NaN	NaN	0.0014838	1	9767	91.783	91.332	1	79989			22155	850	18689	19220	22155	22155		
YCGLCDSIITIYR	13	Unmodified	_YCGLCDSIITIYR_			0	0	0	Q9Y6C9	Q9Y6C9	Q9Y6C9	MTCH2	Mitochondrial carrier homolog 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.389276	1632.764	1.4406	0.0011775	0.97395	0.0007961	2.4145	0.0019736	817.390733640415	14.56	0.079793	14.56	14.533	14.613	0	390	40	1.06389100039157	0.0260927771036219	1.06389100039157	429.721414914609	0	10.5392611572925						233	10	3	NaN	NaN	NaN	0.00041578	1	22562	63.212	62.062	1	43022			22156	3458	18690	19221	22156	22156		
YCLSILTSHVK	11	Unmodified	_YCLSILTSHVK_			0	0	0	O95163	O95163	O95163	IKBKAP	Elongator complex protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	440.904196	1319.69076	-2.8828	-0.0012711	1.4891	0.00065655	-1.3937	-0.00061451	440.904760737644	10.268	0.1064	10.268	10.232	10.339	0	780	25	0.800512323802183	0.0163545256042036	0.800512323802183	485.971200835883	0	9.92842734666004						159	13	3	NaN	NaN	NaN	0.042577	1	12974	21.088	13.442	1	46857			22157	408	18691	19222	22157	22157		
YCLVAVPHGNDIASLFELDPTTLQK	25	Unmodified	_YCLVAVPHGNDIASLFELDPTTLQK_			0	0	0	Q14573	Q14573	Q14573	ITPR3	Inositol 1,4,5-trisphosphate receptor type 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	934.477465	2800.41057	0.67895	0.00063446	0.096864	9.0517E-05	0.77581	0.00072498	934.811194036951	18.967	0.035512	18.967	18.949	18.984	0	429	22	1.03776581230406	0.0140790597417815	1.03776581230406	626.541834846469	0	8.50010649699868						53	5	2	NaN	NaN	NaN	2.6979E-05	1	37901	30.392	29.792	1	12880			22158	1758	18692	19223	22158	22158		
YCNTWPVAISMLASK	15	Unmodified	_YCNTWPVAISMLASK_			0	0	0	Q00796	Q00796	Q00796	SORD	Sorbitol dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	870.926025	1739.8375	1.0462	0.00091119	4.0987	0.0035696	5.1449	0.0044808	870.930707183899	17.087	0.23054	17.087	16.972	17.202	0	312	52	1.11600111266355	0.0340227398849529	1.11600111266355	450.53598175249	0	13.7351731481634						526	27	4	NaN	NaN	NaN	0.01269	1	25589	44.045	26.314	1	119670			22159	1508	18693	19224	22159	22159		
YCVDQNLLK	9	Unmodified	_YCVDQNLLK_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.789524	1151.56449	0.85317	0.0004921	2.5792	0.0014877	3.4324	0.0019798	576.79069984156	8.68	0.213	8.68	8.618	8.831	0	591	46	0.928742107665821	0.0303955552959029	0.928742107665821	376.448586339257	0	12.3202810852381						293	25	3	NaN	NaN	NaN	0.022723	1	8111	45.489	31.841	1	92259			22160	1225	18694	19225	22160	22160		
YCVEEEEK	8	Unmodified	_YCVEEEEK_			0	0	0	P78347	P78347	P78347	GTF2I	General transcription factor II-I	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.226422	1084.43829	1.6332	0.00088721	1.4305	0.00077711	3.0638	0.0016643	543.227450454809	3.173	0.15964	3.173	3.1375	3.2971	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	361.085424696786	0	9.06659202624581						203	19	3	NaN	NaN	NaN	0.00025041	1	6315	93.561	75.866	1	43875			22161	1459	18695	19226	22161	22161		
YCVQLSQIQGLIGSVEEQLAQLR	23	Unmodified	_YCVQLSQIQGLIGSVEEQLAQLR_			0	0	0	Q04695;CON__Q04695;CON__Q9QWL7	Q04695	Q04695	KRT17	Keratin, type I cytoskeletal 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	878.130288	2631.36904	1.3719	0.0012047	-0.64726	-0.00056838	0.72464	0.00063633	878.463879660426	20.217	0.035492	20.217	20.208	20.244	0	267	25	1.14597988355104	0.0159743847562432	1.14597988355104	692.094699396048	0	9.64745295672265						41	5	2	NaN	NaN	NaN	0.011194	1	37362	26.55	24.1	1	37853		+	22162	36	18696	19227	22162	22162		
YCYLQNEVFGLFQK	14	Unmodified	_YCYLQNEVFGLFQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.62739	1807.86034	-1.1081	-0.0006689	1.268	0.00076542	0.15989	9.6514E-05	603.628040860957	18.053	0.070957	18.053	18.018	18.089	0	657	22	0.884090832094921	0.0142279235023115	0.884090832094921	535.207207039472	0	8.61324077029417						177	9	4	NaN	NaN	NaN	0.0023027	1	27419	54.584	54.461	1	49275			22163	718	18697	19228	22163	22163		
YCYLQNEVFGLFQK	14	Unmodified	_YCYLQNEVFGLFQK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	904.937447	1807.86034	1.1403	0.0010319	1.6644	0.0015062	2.8047	0.0025381	905.440620521937	18.045	0.15961	18.045	18	18.16	0	282	52	1.13599383354359	0.0339712685258369	1.13599383354359	458.470736503686	0	13.7103143002292						510	19	5	NaN	NaN	NaN	1.527E-11	1	27420	150.21	145.68	1	158440			22164	718	18697	19228	22164	22164		
YDAFGEDSSSAMGVENR	17	Unmodified	_YDAFGEDSSSAMGVENR_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	917.881055	1833.74756	2.5963	0.0023831	-0.99772	-0.00091579	1.5986	0.0014673	918.381628471964	9.0972	0.16849	9.0972	9.044	9.2125	0	315	46	1.11400032671325	0.0300159293461491	1.11400032671325	449.546162908367	0	12.1126947094364						614	20	5	NaN	NaN	NaN	9.1125E-14	1	28068	137.4	134.32	1	249530			22165	3357	18698	19229	22165	22165		
YDAFGEDSSSAMGVENR	17	Oxidation (M)	_YDAFGEDSSSAM(Oxidation (M))GVENR_	YDAFGEDSSSAM(1)GVENR	YDAFGEDSSSAM(41)GVENR	0	1	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	925.878512	1849.74247	2.4458	0.0022645	-0.52506	-0.00048614	1.9208	0.0017784	925.878048979315	7.0126	0.079783	7.0126	6.9771	7.0569	0	330	28	1.10399226369747	0.0180244409504104	1.10399226369747	445.478564631529	0	7.27315067950053						153	10	3	NaN	NaN	NaN	0.05989	1	28477	40.83	40.023	1	29425			22166	3357	18698	19230	22166	22166	647	
YDAGEHGLQEAEK	13	Unmodified	_YDAGEHGLQEAEK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.82842	1445.64229	2.2621	0.0016374	-0.8126	-0.00058818	1.4495	0.0010492	723.827873723522	3.6342	0.088647	3.6342	3.6076	3.6962	0	510	73	0.983355730988811	0.0484146635728933	0.983355730988811	397.624262680995	0	19.5766845094424						357	11	3	NaN	NaN	NaN	0.0020491	1	16840	48.822	31.831	1	74552			22167	2452	18699	19231	22167	22167		
YDAGEHGLQEAEK	13	Unmodified	_YDAGEHGLQEAEK_			0	0	0	Q93009	Q93009	Q93009	USP7	Ubiquitin carboxyl-terminal hydrolase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	482.888039	1445.64229	-0.66787	-0.00032251	2.7546	0.0013302	2.0867	0.0010077	482.889435964501	3.6342	0.079782	3.6342	3.6076	3.6874	0	801	34	0.78619514174348	0.0225109626091257	0.78619514174348	476.849089254858	0	13.6535211787332						180	10	3	NaN	NaN	NaN	0.00027081	1	16841	34.779	33.727	1	46222			22168	2452	18699	19231	22168	22168		
YDCGEEILITVLSAMTEEAAVAIK	24	Unmodified	_YDCGEEILITVLSAMTEEAAVAIK_			0	0	0	P63241;Q6IS14	P63241	P63241	EIF5A;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	876.104529	2625.29176	0.95508	0.00083675	-0.04862	-4.2596E-05	0.90646	0.00079415	876.438930711546	20.359	0.035476	20.359	20.35	20.385	0	258	28	1.15196821829984	0.0179674763675075	1.15196821829984	695.719711163955	0	10.851278073623						38	5	2	NaN	NaN	NaN	1.711E-09	1	37340	64.21	57.823	1	13109			22169	1434	18700	19232	22169	22169		
YDCVISSPR	9	Unmodified	_YDCVISSPR_			0	0	0	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.758223	1095.50189	1.3932	0.00076455	0.38782	0.00021282	1.7811	0.00097737	548.758186618137	5.5583	0.15972	5.5583	5.4873	5.6471	0	600	55	0.922661313351899	0.0365176629260625	0.922661313351899	374.210244613361	0	14.8107256460402						378	19	3	NaN	NaN	NaN	0.00075076	1	6587	88.921	78.093	1	93538			22170	268	18701	19233	22170	22170		
YDDAIQLYDR	10	Unmodified	_YDDAIQLYDR_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	636.298767	1270.58298	1.0642	0.00067715	-0.1089	-6.9295E-05	0.9553	0.00060786	636.299119856056	9.2213	0.16852	9.2213	9.1681	9.3366	0	549	37	0.957085760909907	0.0242743844973287	0.957085760909907	387.506856604261	0	9.82826285454325						312	20	3	NaN	NaN	NaN	4.965E-05	1	11519	97.277	87.189	1	83703			22171	1788	18702	19234	22171	22171		
YDDEEFEYR	9	Unmodified	_YDDEEFEYR_			0	0	0	P61024	P61024	P61024	CKS1B	Cyclin-dependent kinases regulatory subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.251482	1264.48841	1.8097	0.001146	0.48057	0.00030432	2.2902	0.0014503	633.251756967217	7.2964	0.18621	7.2964	7.2432	7.4294	0	543	34	0.961130371139249	0.0222438199941358	0.961130371139249	389.164610488917	0	9.00659036873708						383	22	4	NaN	NaN	NaN	0.00060709	1	11341	81.642	77.44	1	158250			22172	1324	18703	19235	22172	22172		
YDDMATCMK	9	Unmodified	_YDDMATCMK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.716852	1133.41915	1.8163	0.0010311	-0.54999	-0.00031224	1.2663	0.00071889	567.716921521261	4.9642	0.15959	4.9642	4.9199	5.0795	0	639	37	0.896281965493857	0.0243755060720344	0.896281965493857	363.360291718757	0	9.88203638823239						344	19	4	NaN	NaN	NaN	0.001223	1	7615	81.642	80.752	1	133740			22173	863	18704	19236	22173	22173		
YDDMLVVPIIENTPEEK	17	Unmodified	_YDDMLVVPIIENTPEEK_			0	0	0	Q96GX9	Q96GX9	Q96GX9	APIP	Methylthioribulose-1-phosphate dehydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1002.99536	2003.97616	0.69296	0.00069503	2.8929	0.0029015	3.5858	0.0035965	1003.49993968581	16.697	0.1862	16.697	16.644	16.83	0	180	64	1.203763835057	0.0417918410057598	1.203763835057	485.459619800955	0	16.8540129339219						578	22	4	NaN	NaN	NaN	0.038912	1	31704	14.949	14.142	1	109990			22174	2547	18705	19237	22174	22174		
YDDPEVQK	8	Unmodified	_YDDPEVQK_			0	0	0	P38646	P38646	P38646	HSPA9	Stress-70 protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	497.229822	992.445091	1.5717	0.0007815	0.12778	6.3538E-05	1.6995	0.00084503	497.229926147183	3.0311	0.14186	3.0311	2.9779	3.1198	0	657	28	0.884090832094921	0.018298122879973	0.884090832094921	359.029068374023	0	7.43086317841687						153	17	2	NaN	NaN	NaN	0.012404	1	4102	42.835	30.008	1	29347			22175	1007	18706	19238	22175	22175		
YDDYSSSR	8	Unmodified	_YDDYSSSR_			0	0	0	P38159;Q96E39	P38159	P38159	RBMX;RBMXL1	RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.701429	991.388304	0.99223	0.00049284	0.17886	8.884E-05	1.1711	0.00058168	496.701527167878	2.2951	0.33698	2.2951	2.2508	2.5878	0	726	25	0.837263974740672	0.0163159042618426	0.837263974740672	340.017647872249	0	6.62598124055063						285	39	2	NaN	NaN	NaN	0.00053813	1	4077	97.033	91.285	1	64807			22176	1004	18707	19239	22176	22176		
YDEAASYIQSK	11	Unmodified	_YDEAASYIQSK_			0	0	0	P04899	P04899	P04899	GNAI2	Guanine nucleotide-binding protein G(i) subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.7986	1273.58265	2.0233	0.0012905	7.5167	0.0047941	9.54	0.0060846	638.307274845488	5.9751	0.32814	5.9751	5.9041	6.2323	0	549	58	0.957085760909907	0.0384477564572652	0.957085760909907	387.497011158394	0	15.5664114141371						403	38	3	NaN	NaN	NaN	0.0041661	1	11583	53.028	27.774	1	121410			22177	520	18708	19240	22177	22177		
YDEAIDCYTK	10	Unmodified	_YDEAIDCYTK_			0	0	0	Q9H6T3	Q9H6T3	Q9H6T3	RPAP3	RNA polymerase II-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.271361	1276.52817	1.3296	0.00084999	2.9877	0.00191	4.3173	0.0027599	639.273051304179	6.3742	0.12413	6.3742	6.3387	6.4629	0	561	28	0.948993180460448	0.0182120890547127	0.948993180460448	384.21106158487	0	7.37337866431687						179	15	3	NaN	NaN	NaN	0.0018911	1	11662	43.272	41.473	1	50163			22178	2909	18709	19241	22178	22178		
YDEFHDYLER	10	Unmodified	_YDEFHDYLER_			0	0	0	Q96K76	Q96K76	Q96K76	USP47	Ubiquitin carboxyl-terminal hydrolase 47	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.870208	1385.58879	-2.0472	-0.00094758	1.4931	0.00069111	-0.55408	-0.00025647	462.870968233679	8.7156	0.10643	8.7156	8.6891	8.7955	0	783	22	0.798467866007927	0.0143131971978526	0.798467866007927	484.491463142964	0	8.68491037380403						143	13	3	NaN	NaN	NaN	0.042065	1	14993	19.324	16.221	1	31650			22179	2572	18710	19242	22179	22179		
YDEMVESMK	9	Unmodified	_YDEMVESMK_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	566.238475	1130.4624	1.4606	0.00082706	0.49318	0.00027926	1.9538	0.0011063	566.239043580405	6.2323	0.23057	6.2323	6.1791	6.4096	0	621	49	0.908462957275599	0.0324736460639303	0.908462957275599	368.310140474298	0	13.1655044905594						861	27	5	NaN	NaN	NaN	0.00091058	1	7534	76.605	62.069	1	763300			22180	1375	18711	19243	22180	22180		
YDEMVESMK	9	Oxidation (M)	_YDEMVESM(Oxidation (M))K_	YDEMVESM(1)K	YDEM(-35)VESM(35)K	0	1	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.235932	1146.45731	2.2566	0.0012958	-0.12537	-7.199E-05	2.1313	0.0012239	574.235933020744	3.8026	0.17732	3.8026	3.7583	3.9356	0	645	43	0.892219381832517	0.0284380921957725	0.892219381832517	361.663843985613	0	11.5274672895091						321	21	4	NaN	NaN	NaN	0.0026122	1	7958	69.716	60.323	2	88821			22181	1375	18711	19244	22181	22181	489	
YDESDNAFIR	10	Unmodified	_YDESDNAFIR_			0	0	0	O43615	O43615	O43615	TIMM44	Mitochondrial import inner membrane translocase subunit TIM44	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.275292	1228.53603	1.2892	0.00079321	2.7246	0.0016763	4.0138	0.0024696	615.276424030627	7.456	0.15073	7.456	7.4117	7.5624	0	588	40	0.93076847747433	0.0263391634913087	0.93076847747433	376.990096794443	0	10.6681779995573						169	18	2	NaN	NaN	NaN	0.0015386	1	10252	81.163	72.981	1	96561			22182	211	18712	19245	22182	22182		
YDGHLPIEIK	10	Unmodified	_YDGHLPIEIK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	395.548518	1183.62372	-1.4098	-0.00055763	-1.8734	-0.00074103	-3.2832	-0.0012987	395.547733390108	9.1947	0.15075	9.1947	9.106	9.2568	0	903	28	0.716455593386714	0.018502976221729	0.716455593386714	435.459319883032	0	11.2460472298623						299	18	3	NaN	NaN	NaN	0.056859	1	8977	20.183	16.29	1	126320			22183	1067	18713	19246	22183	22183		
YDGKWEVEEMK	11	Unmodified	_YDGKWEVEEMK_			0	0	1	P27824	P27824	P27824	CANX	Calnexin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.883349	1412.62822	-0.77079	-0.00036372	-1.0592	-0.00049982	-1.83	-0.00086354	471.882829174096	7.3319	0.15073	7.3319	7.2875	7.4383	0	810	34	0.78005493425781	0.0225203682551777	0.78005493425781	473.22954651396	0	13.6622476042217						348	18	4	NaN	NaN	NaN	0.0068783	1	15830	60.547	43.895	1	130360			22184	870	18714	19247	22184	22184		
YDGLVGMFDPK	11	Unmodified	_YDGLVGMFDPK_			0	0	0	P12081;P49590	P12081;P49590	P12081	HARS;HARS2	Histidine--tRNA ligase, cytoplasmic;Probable histidine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.297181	1240.57981	1.2129	0.00075356	-1.4642	-0.0009097	-0.25132	-0.00015614	621.2964642404	14.48	0.15961	14.48	14.382	14.542	0	567	52	0.944945209309785	0.0344006212312528	0.944945209309785	382.690843695185	0	13.9318159750686						444	19	2	NaN	NaN	NaN	0.022169	1	10629	32.549	17.786	1	169760			22185	664;1138	18715	19248	22185	22185		
YDGQVAVFGSDLQEK	15	Unmodified	_YDGQVAVFGSDLQEK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	552.601898	1654.78387	0.70053	0.00038712	1.3794	0.00076227	2.0799	0.0011494	552.60254248075	11.057	0.14188	11.057	11.004	11.146	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	547.889092780432	0	13.5277109696092						381	17	4	NaN	NaN	NaN	0.0028531	1	23186	54.199	39.051	1	169310			22186	804	18716	19249	22186	22186		
YDGQVAVFGSDLQEK	15	Unmodified	_YDGQVAVFGSDLQEK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	828.399209	1654.78387	3.1829	0.0026367	1.3077	0.0010833	4.4905	0.00372	828.399719819652	11.057	0.28377	11.057	10.933	11.216	0	372	103	1.07593298845566	0.0681816050227886	1.07593298845566	434.536695358956	0	27.5364819638049						1859	33	5	NaN	NaN	NaN	6.1845E-09	1	23188	174.72	124.42	1	1677500			22187	804	18716	19249	22187	22187		
YDGSTIVPGEQGAEYQHFIQQCTDDVR	27	Unmodified	_YDGSTIVPGEQGAEYQHFIQQCTDDVR_			0	0	0	Q14019	Q14019	Q14019	COTL1	Coactosin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1038.46836	3112.38324	1.7866	0.0018553	0.55203	0.00057326	2.3386	0.0024286	1038.80347979923	13.354	0.13307	13.354	13.3	13.434	0	417	103	1.04580932352505	0.068398255433112	1.04580932352505	631.085178527186	0	41.2743740851911						1162	16	6	NaN	NaN	NaN	0.00060862	1	38372	33.63	33.526	1	358780			22188	1715	18717	19250	22188	22188		
YDHLDPTEMEK	11	Unmodified	_YDHLDPTEMEK_			0	0	0	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	459.87122	1376.59183	-1.2714	-0.00058467	-0.52239	-0.00024023	-1.7938	-0.0008249	459.87080160396	6.1879	0.079806	6.1879	6.1525	6.2323	0	855	19	0.749315378969369	0.0123086780485644	0.749315378969369	454.696218336536	0	7.46909714985708						100	10	3	NaN	NaN	NaN	0.056286	1	14688	17.47	16.967	1	18655			22189	450	18718	19251	22189	22189		
YDIDLPNK	8	Unmodified	_YDIDLPNK_			0	0	0	O00244	O00244	O00244	ATOX1	Copper transport protein ATOX1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	489.250557	976.486562	0.10474	5.1244E-05	0.010634	5.2027E-06	0.11537	5.6447E-05	489.250422103136	8.077	0.17742	8.077	8.0237	8.2011	0	732	61	0.833184998970724	0.0407784404660595	0.833184998970724	338.431808632144	0	16.5638140115046						368	21	2	NaN	NaN	NaN	0.00078914	1	3762	121.52	72.458	1	264260			22190	66	18719	19252	22190	22190		
YDIDMTK	7	Unmodified	_YDIDMTK_			0	0	0	O00217	O00217	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	443.204761	884.394969	-1.3937	-0.00061772	0.58668	0.00026002	-0.80707	-0.0003577	443.205159248124	6.0017	0.13295	6.0017	5.9663	6.0993	0	783	31	0.798467866007927	0.0204460030373547	0.798467866007927	324.798607588237	0	8.31697003722837						189	16	3	NaN	NaN	NaN	0.071958	1	2061	29.102	25.286	1	47327			22191	62	18720	19253	22191	22191		
YDLFVGSQATDFGEALVR	18	Unmodified	_YDLFVGSQATDFGEALVR_			0	0	0	O43852	O43852	O43852	CALU	Calumenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.49163	1986.96871	1.4928	0.0014845	0.48644	0.00048376	1.9792	0.0019683	994.993521289781	17.654	0.24825	17.654	17.592	17.841	0	120	169	1.2434810169581	0.111147480876076	1.2434810169581	501.506490363672	0	44.8267261717291						2596	29	5	NaN	NaN	NaN	1.9729E-26	1	31387	185.57	164.96	1	925500			22192	241	18721	19254	22192	22192		
YDLHQVK	7	Unmodified	_YDLHQVK_			0	0	0	Q9BQG0	Q9BQG0	Q9BQG0	MYBBP1A	Myb-binding protein 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	451.74016	901.465767	0.51043	0.00023058	1.7619	0.00079591	2.2723	0.0010265	451.741134546775	3.3769	0.22175	3.3769	3.2971	3.5189	0	735	31	0.831145085810763	0.020400551942483	0.831145085810763	337.993089727575	0	8.29607934992669						289	26	3	NaN	NaN	NaN	0.0098096	1	2347	63.301	21.073	1	70777			22193	2698	18722	19255	22193	22193		
YDLLCLEGLVR	11	Unmodified	_YDLLCLEGLVR_			0	0	0	Q9NSD9	Q9NSD9	Q9NSD9	FARSB	Phenylalanine--tRNA ligase beta subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	675.857938	1349.70132	0.71979	0.00048648	-2.1429	-0.0014483	-1.4231	-0.00096184	675.857769222638	17.699	0.12413	17.699	17.654	17.779	0	498	46	0.991429299781895	0.0302654273538991	0.991429299781895	401.158838805582	0	12.2462022212939						421	15	5	NaN	NaN	NaN	0.004415	1	13884	44.57	29.807	1	120230			22194	3036	18723	19256	22194	22194		
YDLLIPQFR	9	Unmodified	_YDLLIPQFR_			0	0	0	Q9P2K8	Q9P2K8	Q9P2K8	EIF2AK4	Eukaryotic translation initiation factor 2-alpha kinase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.824224	1163.63389	0.20271	0.00011815	-2.8455	-0.0016584	-2.6427	-0.0015403	582.822506005615	15.588	0.088669	15.588	15.535	15.624	0	588	16	0.93076847747433	0.0101304457467996	0.93076847747433	377.22365335454	0	4.10568669567243						63	11	2	NaN	NaN	NaN	0.0094542	1	8445	53.878	46.728	1	11144			22195	3162	18724	19257	22195	22195		
YDLLVSNAIQFLASVCERPHYK	22	Unmodified	_YDLLVSNAIQFLASVCERPHYK_			0	0	1	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	656.588887	2622.32644	-0.63482	-0.00041682	0.11324	7.4349E-05	-0.52159	-0.00034247	656.83969852698	19.641	0.062091	19.641	19.614	19.676	0	633	31	0.900343422309015	0.0203044701825483	0.900343422309015	725.007417922977	0	16.3503071545638						154	8	4	NaN	NaN	NaN	0.0012016	1	37326	26.21	25.61	1	30336			22196	1264	18725	19258	22196	22196		
YDLLVSNAIQFLASVCERPHYK	22	Unmodified	_YDLLVSNAIQFLASVCERPHYK_			0	0	1	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	656.588887	2622.32644	-1.1158	-0.00073261	1.4097	0.00092561	0.29394	0.000193	656.840805502689	19.641	0.026599	19.641	19.632	19.658	0	657	13	0.884090832094921	0.00813080577614178	0.884090832094921	711.919908691659	0	6.54738438133586						33	4	3	NaN	NaN	NaN	5.7382E-06	1	37328	21.21	20.249	1	4982.7			22197	1264	18725	19258	22197	22197		
YDLLVSNAIQFLASVCERPHYK	22	Unmodified	_YDLLVSNAIQFLASVCERPHYK_			0	0	1	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	875.116091	2622.32644	1.0237	0.00089587	-0.16542	-0.00014476	0.8583	0.00075111	875.450124939408	19.641	0.04433	19.641	19.623	19.667	0	414	31	1.04781950764076	0.0200976833254141	1.04781950764076	632.823905862724	0	12.1378676079593						85	6	4	NaN	NaN	NaN	0.045124	1	37329	24.471	18.636	1	14039			22198	1264	18725	19258	22198	22198		
YDNLHLEDLFIGNK	14	Unmodified	_YDNLHLEDLFIGNK_			0	0	0	Q9Y5B8	Q9Y5B8	Q9Y5B8	NME7	Nucleoside diphosphate kinase 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	564.286022	1689.83624	-1.1642	-0.00065696	-2.1275	-0.0012005	-3.2917	-0.0018575	564.285207236425	15.092	0.079818	15.092	15.056	15.136	0	741	28	0.827064408645228	0.018364325465562	0.827064408645228	500.950617172848	0	11.1232209726033						230	10	5	NaN	NaN	NaN	0.0017476	1	24208	57.003	50.626	1	49403			22199	3429	18726	19259	22199	22199		
YDNQIHIIDFDDENNIINK	19	Unmodified	_YDNQIHIIDFDDENNIINK_			0	0	0	Q53HC9	Q53HC9	Q53HC9	TSSC1	Protein TSSC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	778.372995	2332.09715	0.412	0.00032069	-1.3482	-0.0010494	-0.93618	-0.0007287	778.706185300454	14.099	0.053198	14.099	14.072	14.125	0	579	25	0.936845902828289	0.0162053462177963	0.936845902828289	566.173211744827	0	9.79353476155211						147	7	4	NaN	NaN	NaN	4.1026E-07	1	35913	88.796	79.217	1	28702			22200	1953	18727	19260	22200	22200		
YDPGALVIPFSGALELK	17	Unmodified	_YDPGALVIPFSGALELK_			0	0	0	Q9NTK5	Q9NTK5	Q9NTK5	OLA1	Obg-like ATPase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	895.49037	1788.96619	1.7126	0.0015336	-1.0092	-0.00090373	0.70343	0.00062991	895.489434089144	19.428	0.097577	19.428	19.383	19.481	0	297	76	1.12600091227925	0.0499440237405131	1.12600091227925	454.47428191164	0	20.1583090011018						607	12	4	NaN	NaN	NaN	0.00016309	1	26952	65.173	62.457	1	164890			22201	3044	18728	19261	22201	22201		
YDPPLEDGAMPSAR	14	Unmodified	_YDPPLEDGAMPSAR_			0	0	0	P47756	P47756	P47756	CAPZB	F-actin-capping protein subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	759.848298	1517.68204	2.0929	0.0015903	0.65796	0.00049995	2.7508	0.0020902	759.848461538129	8.9375	0.33713	8.9375	8.7778	9.1149	0	444	49	1.02770517576159	0.0322051603576423	1.02770517576159	415.370131221447	0	13.0164389547308						915	39	4	NaN	NaN	NaN	2.6928E-06	1	19060	82.437	69.163	1	627950			22202	1100	18729	19262	22202	22202		
YDPSLTFSENVDLTEPIISR	20	Unmodified	_YDPSLTFSENVDLTEPIISR_			0	0	0	P49736	P49736	P49736	MCM2	DNA replication licensing factor MCM2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1148.57081	2295.12706	-0.37181	-0.00042705	0.40273	0.00046257	0.030924	3.5518E-05	1149.0727050104	16.865	0.15965	16.865	16.821	16.98	0	81	58	1.2692388538616	0.0376254562668012	1.2692388538616	511.41775630358	0	15.1605242506736						577	19	4	NaN	NaN	NaN	2.6486E-05	1	35600	62.711	62.346	1	117030			22203	1144	18730	19263	22203	22203		
YDPTIEDSYRK	11	Unmodified	_YDPTIEDSYRK_			0	0	1	P61224;P62834	P61224;P62834	P62834	RAP1B;RAP1A	Ras-related protein Rap-1b;Ras-related protein Rap-1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.830431	1385.64631	2.1883	0.0015183	-3.543	-0.0024583	-1.3548	-0.00094	693.83078874495	5.0263	0.14186	5.0263	4.9819	5.1238	0	513	28	0.981336640919867	0.0181743257356556	0.981336640919867	396.970653753868	0	7.35188483541805						266	17	4	NaN	NaN	NaN	0.03943	1	14997	36.24	32.632	1	46658			22204	1401;1336	18731	19264	22204	22204		
YDPVWMTVTR	10	Unmodified	_YDPVWMTVTR_			0	0	0	Q01831	Q01831	Q01831	XPC	DNA repair protein complementing XP-C cells	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.310623	1266.60669	0.92767	0.00058843	-0.18381	-0.00011659	0.74386	0.00047184	634.310338279626	12.795	0.079807	12.795	12.751	12.83	0	606	34	0.918606045818476	0.0222993386334626	0.918606045818476	371.939664582339	0	9.02890697213746						129	10	2	NaN	NaN	NaN	0.0088771	1	11404	48.157	39.975	1	21659			22205	1522	18732	19265	22205	22205		
YDQNYDIR	8	Unmodified	_YDQNYDIR_			0	0	0	O00203;Q13367	O00203	O00203	AP3B1;AP3B2	AP-3 complex subunit beta-1;AP-3 complex subunit beta-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	543.74617	1085.47779	1.2832	0.00069774	2.9688	0.0016143	4.252	0.002312	543.747851408549	4.8755	0.133	4.8755	4.8401	4.9731	0	639	28	0.896281965493857	0.0182803602689122	0.896281965493857	363.553070698487	0	7.41494458786275						153	16	3	NaN	NaN	NaN	0.012604	1	6343	60.589	46.942	1	33098			22206	61	18733	19266	22206	22206		
YDTALNLLK	9	Unmodified	_YDTALNLLK_			0	0	0	Q8NI36	Q8NI36	Q8NI36	WDR36	WD repeat-containing protein 36	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.795132	1049.57571	-0.36341	-0.00019108	-1.0112	-0.00053169	-1.3746	-0.00072277	525.794772403813	11.811	0.15075	11.811	11.749	11.899	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	357.936852302745	0	6.5998360975388						217	18	3	NaN	NaN	NaN	0.0012078	1	5464	74.486	60.838	1	62018			22207	2329	18734	19267	22207	22207		
YDTVLDILR	9	Unmodified	_YDTVLDILR_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.305864	1106.59717	-0.56119	-0.00031107	-1.4676	-0.00081348	-2.0287	-0.0011245	554.305182132922	15.854	0.20398	15.854	15.766	15.97	0	657	37	0.884090832094921	0.0243890366748388	0.884090832094921	358.522289531749	0	9.89040147313528						398	24	3	NaN	NaN	NaN	0.00011992	1	6899	94.806	61.41	1	123870			22208	652	18735	19268	22208	22208		
YDWDLLAAR	9	Unmodified	_YDWDLLAAR_			0	0	0	Q15029	Q15029	Q15029	EFTUD2	116 kDa U5 small nuclear ribonucleoprotein component	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.782556	1121.55056	0.61333	0.00034456	-1.3628	-0.00076561	-0.7495	-0.00042105	561.781522303124	14.444	0.15075	14.444	14.382	14.533	-1.7764E-15	636	43	0.898312834727904	0.0284302042688603	0.898312834727904	364.229937788557	0	11.5273111235235						362	18	3	NaN	NaN	NaN	0.00084299	1	7302	109.36	71.035	1	300000			22209	1796	18736	19269	22209	22209		
YDYEEVEAEGANK	13	Unmodified	_YDYEEVEAEGANK_			0	0	0	P36871	P36871	P36871	PGM1	Phosphoglucomutase-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.825543	1515.63653	2.1026	0.0015955	-1.039	-0.00078838	1.0636	0.00080712	758.824954308034	6.6668	0.23053	6.6668	6.6136	6.8441	0	471	40	1.00957851518677	0.0261974290560794	1.00957851518677	408.048817601925	0	10.5884087168454						524	27	5	NaN	NaN	NaN	6.8007E-17	1	18986	199.59	197.79	1	263250			22210	991	18737	19270	22210	22210		
YDYNSGEELESYK	13	Unmodified	_YDYNSGEELESYK_			0	0	0	Q9Y3F4	Q9Y3F4	Q9Y3F4	STRAP	Serine-threonine kinase receptor-associated protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	798.83865	1595.66275	2.4733	0.0019758	0.56717	0.00045308	3.0405	0.0024289	798.83894245448	7.9881	0.17747	7.9881	7.935	8.1124	0	384	52	1.06790610341098	0.0341307405307956	1.06790610341098	431.427544255995	0	13.7886107437789						623	21	5	NaN	NaN	NaN	4.4723E-24	1	21441	240.52	234.49	1	476880			22211	3394	18738	19271	22211	22211		
YDYVLTGYTR	10	Unmodified	_YDYVLTGYTR_			0	0	0	O00764	O00764	O00764	PDXK	Pyridoxal kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.806228	1249.5979	2.0191	0.0012635	4.182	0.0026171	6.2011	0.0038807	625.808668625345	9.7889	0.25716	9.7889	9.6913	9.9484	0	540	37	0.963152256458504	0.024267665443817	0.963152256458504	390.033460128934	0	9.82731593975257						370	30	2	NaN	NaN	NaN	0.0032359	1	10910	65.933	58.782	1	196770			22212	99	18739	19272	22212	22212		
YEAAGTLVTLSSAPTAIK	18	Unmodified	_YEAAGTLVTLSSAPTAIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.988192	1791.96183	1.0362	0.00092945	-0.33971	-0.00030472	0.69648	0.00062473	897.489325705797	13.132	0.1153	13.132	13.096	13.212	0	117	46	1.24546401832526	0.0297572623085223	1.24546401832526	502.68528038463	0	12.010413409737						407	14	4	NaN	NaN	NaN	6.9438E-07	1	27030	106.97	94.389	1	109340			22213	1240	18740	19273	22213	22213		
YEAAGTLVTLSSAPTAIK	18	Unmodified	_YEAAGTLVTLSSAPTAIK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.988192	1791.96183	1.9096	0.0017129	0.64751	0.00058081	2.5571	0.0022937	897.489846392544	13.132	0.1685	13.132	13.088	13.256	0	267	52	1.14597988355104	0.0339339081385672	1.14597988355104	462.532201838043	0	13.6961612272511						564	20	5	NaN	NaN	NaN	8.6915E-26	1	27031	137.4	135.42	1	195430			22214	1240	18740	19273	22214	22214		
YEAPQATDGLAGALDAR	17	Unmodified	_YEAPQATDGLAGALDAR_			0	0	0	O60784	O60784	O60784	TOM1	Target of Myb protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	859.92084	1717.82713	2.8902	0.0024853	-3.8404	-0.0033025	-0.95024	-0.00081713	860.420146888749	11.314	0.17739	11.314	11.216	11.394	0	309	70	1.11800162319566	0.0460497984015082	1.11800162319566	451.389338637492	0	18.5924488959431						613	21	3	NaN	NaN	NaN	0.00019844	1	24991	70.598	60.347	1	139220			22215	282	18741	19274	22215	22215		
YEAVGSVHQAWEAIR	15	Unmodified	_YEAVGSVHQAWEAIR_			0	0	0	Q9BV20	Q9BV20	Q9BV20	MRI1	Methylthioribose-1-phosphate isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.621516	1714.84272	-0.7765	-0.00044464	-1.7289	-0.00099	-2.5054	-0.0014346	572.954993330451	10.294	0.097552	10.294	10.25	10.347	0	726	43	0.837263974740672	0.0285568061062612	0.837263974740672	507.068375329712	0	17.2947286802737						281	12	4	NaN	NaN	NaN	0.013224	1	24901	30.875	28.738	1	53154			22216	2752	18742	19275	22216	22216		
YEDAVQFIR	9	Unmodified	_YEDAVQFIR_			0	0	0	Q12974;Q93096	Q12974	Q12974	PTP4A2;PTP4A1	Protein tyrosine phosphatase type IVA 2;Protein tyrosine phosphatase type IVA 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.787838	1139.56112	0.80556	0.0004598	0.63118	0.00036027	1.4367	0.00082007	570.787831389678	10.002	0.21278	10.002	9.9307	10.143	0	615	43	0.912521036363781	0.0284026223535851	0.912521036363781	369.919780146367	0	11.5139173760703						340	25	3	NaN	NaN	NaN	0.00033709	1	7775	98.009	61.439	1	79679			22217	1613	18743	19276	22217	22217		
YEDAYQYQNIFGPLVK	16	Unmodified	_YEDAYQYQNIFGPLVK_			0	0	0	Q92900	Q92900	Q92900	UPF1	Regulator of nonsense transcripts 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	974.477991	1946.94143	1.5638	0.0015239	0.86523	0.00084315	2.4291	0.0023671	974.98020207173	16.502	0.27488	16.502	16.36	16.635	0	195	64	1.19381749893585	0.0418033194673584	1.19381749893585	481.545433006979	0	16.8620392915851						898	32	4	NaN	NaN	NaN	4.3706E-05	1	30662	80.623	79.66	1	196110			22218	2442	18744	19277	22218	22218		
YEDEINK	7	Unmodified	_YEDEINK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931;CON__Q9H552;CON__Q8BGZ7;CON__P04259;P02538;P04259;P48668;O95678;CON__O95678;CON__Q5XQN5;CON__P50446;CON__Q922U2;CON__P02538;CON__P48668;CON__P12035;CON__P13647;CON__Q01546;CON__Q8VED5;P13647;CON__H-INV:HIT000016045;P12035;Q01546;CON__Q6IFZ6;P35908;Q7Z794;CON__P35908;CON__P35908v2;CON__Q3TTY5;CON__Q7Z794;CON__P04264;P04264;CON__ENSEMBL:ENSBTAP00000038253	P05787	P05787	KRT8;KRT6A;KRT6B;KRT6C;KRT75;KRT5;KRT3;KRT76;KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	455.711265	909.407977	0.11937	5.4399E-05	0.82374	0.00037539	0.94311	0.00042979	455.711518622923	2.7296	0.25716	2.7296	2.6941	2.9513	0	771	40	0.806643990516186	0.0265705609050354	0.806643990516186	327.986504718042	0	10.8037566784123						421	30	3	NaN	NaN	NaN	0.0055705	1	2492	84.699	59.88	1	140610		+	22219	28	18745	19278	22219	22219		
YEDEINKR	8	Unmodified	_YEDEINKR_			0	0	1	P05787;CON__P05787;CON__Q8BGZ7;CON__P04259;P02538;P04259;P48668;O95678;CON__O95678;CON__Q5XQN5;CON__P50446;CON__Q922U2;CON__P02538;CON__P48668;CON__P12035;CON__P13647;CON__Q01546;CON__Q8VED5;P13647;CON__H-INV:HIT000016045;P12035;Q01546;CON__Q6IFZ6;P35908;Q7Z794;CON__P35908;CON__P35908v2;CON__Q3TTY5;CON__Q7Z794;CON__P04264;P04264;CON__ENSEMBL:ENSBTAP00000038253	P05787	P05787	KRT8;KRT6A;KRT6B;KRT6C;KRT75;KRT5;KRT3;KRT76;KRT2;KRT77;KRT1	Keratin, type II cytoskeletal 8;Keratin, type II cytoskeletal 6A;Keratin, type II cytoskeletal 6B;Keratin, type II cytoskeletal 6C;Keratin, type II cytoskeletal 75;Keratin, type II cytoskeletal 5;Keratin, type II cytoskeletal 3;Keratin, type II cytoskeletal 2 oral;Keratin, type II cytoskeletal 2 epidermal;Keratin, type II cytoskeletal 1b;Keratin, type II cytoskeletal 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	356.176972	1065.50909	-0.53827	-0.00019172	0.92442	0.00032926	0.38615	0.00013754	356.177161146365	2.171	0.12414	2.171	2.1532	2.2774	0	888	13	0.726732155490709	0.00821838251404938	0.726732155490709	442.268035916858	0	5.00146837516473						84	15	2	NaN	NaN	NaN	0.0027919	1	5851	63.301	57.071	1	14849		+	22220	28	18746	19279	22220	22220		
YEDFSNLGTTHLLR	14	Unmodified	_YEDFSNLGTTHLLR_			0	0	0	P22695	P22695	P22695	UQCRC2	Cytochrome b-c1 complex subunit 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.945888	1664.81583	0.27321	0.00015189	-0.79345	-0.00044111	-0.52024	-0.00028923	556.279985721078	11.536	0.39024	11.536	11.42	11.811	0	660	100	0.882057989648486	0.0670001851863864	0.882057989648486	534.325301834456	0	40.5867806797455						1002	45	5	NaN	NaN	NaN	0.00011093	1	23478	77.358	70.982	1	657480			22221	811	18747	19280	22221	22221		
YEDFVVDGFNVLYNK	15	Unmodified	_YEDFVVDGFNVLYNK_			0	0	0	Q6P996	Q6P996	Q6P996	PDXDC1	Pyridoxal-dependent decarboxylase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	911.438335	1820.86212	1.3032	0.0011878	2.1151	0.0019278	3.4184	0.0031157	911.941082499557	17.716	0.10641	17.716	17.672	17.779	0	252	34	1.15595906938629	0.0219511929599736	1.15595906938629	466.503056194429	0	8.85870345597806						268	13	4	NaN	NaN	NaN	2.8753E-06	1	27745	82.437	78.191	1	64341			22222	2069	18748	19281	22222	22222		
YEDHTIFHDISLR	13	Unmodified	_YEDHTIFHDISLR_			0	0	0	P82675	P82675	P82675	MRPS5	28S ribosomal protein S5, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	412.204681	1644.78962	-2.6985	-0.0011123	1.01	0.00041632	-1.6885	-0.000696	412.20490331894	10.268	0.1064	10.268	10.232	10.339	0	795	22	0.790287188799094	0.0143191751131978	0.790287188799094	638.371728536968	0	11.5666262819293						168	13	3	NaN	NaN	NaN	0.044543	1	22882	28.647	27.594	1	49962			22223	1473	18749	19282	22223	22223		
YEDICPSTHNMDVPNIK	17	Unmodified	_YEDICPSTHNMDVPNIK_			0	0	0	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.30828	2031.90301	0.45927	0.00031153	0.6542	0.00044375	1.1135	0.00075528	678.643193749971	9.3632	0.23056	9.3632	9.2745	9.5051	0	648	82	0.890187667287968	0.0548259126734941	0.890187667287968	538.445970306488	0	33.1624362280326						1452	27	6	NaN	NaN	NaN	2.6132E-10	1	32181	132.93	128.62	1	754970			22224	1434	18750	19283	22224	22224		
YEDICPSTHNMDVPNIK	17	Unmodified	_YEDICPSTHNMDVPNIK_			0	0	0	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1016.95878	2031.90301	1.7066	0.0017355	0.3937	0.00040037	2.1003	0.0021359	1017.46068992734	9.3544	0.14187	9.3544	9.31	9.4519	0	201	64	1.18983705239708	0.0418090604716055	1.18983705239708	479.797796276264	0	16.8593632533498						715	17	5	NaN	NaN	NaN	1.2801E-06	1	32182	94.63	93.359	1	177200			22225	1434	18750	19283	22225	22225		
YEDICPSTHNMDVPNIK	17	Oxidation (M)	_YEDICPSTHNM(Oxidation (M))DVPNIK_	YEDICPSTHNM(1)DVPNIK	YEDICPSTHNM(94)DVPNIK	0	1	0	P63241;Q9GZV4;Q6IS14	P63241	P63241	EIF5A;EIF5A2;EIF5AL1	Eukaryotic translation initiation factor 5A-1;Eukaryotic translation initiation factor 5A-2;Eukaryotic translation initiation factor 5A-1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.639918	2047.89793	1.3596	0.00092949	1.5377	0.0010512	2.8973	0.0019807	683.9755254704	7.3851	0.097533	7.3851	7.3319	7.4294	0	594	61	0.926715457081489	0.0405470750035098	0.926715457081489	560.510772977308	0	24.5243264030155						358	12	3	NaN	NaN	NaN	6.5139E-05	1	32494	93.772	86.196	1	70961			22226	1434	18750	19284	22226	22226	512	
YEDLAPCITLK	11	Unmodified	_YEDLAPCITLK_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.836671	1321.65879	0.20297	0.00013433	2.6772	0.0017719	2.8802	0.0019062	661.838671631307	11.89	0.17738	11.89	11.793	11.97	0	498	37	0.991429299781895	0.0242207100839708	0.991429299781895	401.245086610432	0	9.80245481704736						344	21	3	NaN	NaN	NaN	0.0069317	1	13033	48.785	38.083	1	81552			22227	883	18751	19285	22227	22227		
YEDMAAFMK	9	Unmodified	_YEDMAAFMK_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.238278	1104.462	0.90155	0.00049877	-0.64129	-0.00035478	0.26027	0.00014399	553.238395425223	10.436	0.18624	10.436	10.356	10.543	0	639	43	0.896281965493857	0.0284380921957725	0.896281965493857	363.474756957864	0	11.5326750365977						595	22	5	NaN	NaN	NaN	0.00073814	1	6833	62.88	40.952	1	295850			22228	933	18752	19286	22228	22228		
YEEALSQLEESVK	13	Unmodified	_YEEALSQLEESVK_			0	0	0	Q8N8A6	Q8N8A6	Q8N8A6	DDX51	ATP-dependent RNA helicase DDX51	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	762.875036	1523.73552	1.0808	0.00082451	1.9371	0.0014777	3.0179	0.0023023	762.876379681725	12.006	0.079802	12.006	11.97	12.05	0	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	438.089206531758	0	8.10361919836151						203	10	4	NaN	NaN	NaN	3.6339E-05	1	19231	73.655	56.185	1	44707			22229	2271	18753	19287	22229	22229		
YEEDYYEDDEEDDPDALK	18	Unmodified	_YEEDYYEDDEEDDPDALK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1126.92932	2251.84408	1.9414	0.0021878	-0.47776	-0.00053841	1.4636	0.0016494	1127.42968536443	9.044	0.053216	9.044	9.0085	9.0617	0	147	34	1.22562176648663	0.0218489376756466	1.22562176648663	493.900137560835	0	8.80466847002401						119	7	3	NaN	NaN	NaN	1.9024E-10	1	35199	113.34	113.01	1	18527			22230	2594	18754	19288	22230	22230		
YEEENFYLEPYLK	13	Unmodified	_YEEENFYLEPYLK_			0	0	0	P14927	P14927	P14927	UQCRB	Cytochrome b-c1 complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.906336	1735.79812	1.8003	0.0015643	3.038	0.0026398	4.8383	0.004204	869.410445192552	14.719	0.19511	14.719	14.675	14.87	0	273	76	1.14198628764525	0.0499646417940307	1.14198628764525	461.034828832791	0	20.1713806255077						880	23	5	NaN	NaN	NaN	9.8255E-12	1	25488	183.08	175.08	1	441120			22231	707	18755	19289	22231	22231		
YEEIDNAPEER	11	Unmodified	_YEEIDNAPEER_			0	0	0	P49411	P49411	P49411	TUFM	Elongation factor Tu, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.801871	1363.58919	2.1624	0.0014765	0.94168	0.00064298	3.1041	0.0021195	682.802094539085	4.7337	0.2217	4.7337	4.6627	4.8844	0	516	46	0.979317271586824	0.0302947379404193	0.979317271586824	396.217063308058	0	12.2567960850836						551	26	4	NaN	NaN	NaN	9.3549E-06	1	14292	141.29	126.15	1	141110			22232	1131	18756	19290	22232	22232		
YEELQSLAGK	10	Unmodified	_YEELQSLAGK_			0	0	0	P05787;CON__P05787;CON__H-INV:HIT000292931	P05787	P05787	KRT8	Keratin, type II cytoskeletal 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.292953	1136.57135	1.9006	0.001082	0.88641	0.00050463	2.787	0.0015866	569.293543194709	7.4294	0.33693	7.4294	7.2964	7.6334	0	609	61	0.916577990479294	0.0405639373344322	0.916577990479294	371.576080235925	0	16.4444149763866						1272	39	5	NaN	NaN	NaN	3.1135E-05	1	7707	102.55	11.785	1	1649300		+	22233	28	18757	19291	22233	22233		
YEETVFYGLQYILNK	15	Unmodified	_YEETVFYGLQYILNK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	940.47746	1878.94037	-0.097231	-9.1444E-05	0.58662	0.00055171	0.48939	0.00046026	940.980308672819	19.268	0.044344	19.268	19.25	19.295	0	141	22	1.2295923935727	0.0138943372710902	1.2295923935727	496.102833120761	0	5.60593910677579						68	6	3	NaN	NaN	NaN	0.072485	1	29136	39.293	35.047	1	12397			22234	1067	18758	19292	22234	22234		
YEEVSVSGFEEFHR	14	Unmodified	_YEEVSVSGFEEFHR_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	572.261765	1713.76346	1.0878	0.0006225	0.091716	5.2486E-05	1.1795	0.00067499	572.261865687311	10.835	0.32811	10.835	10.782	11.11	0	633	46	0.900343422309015	0.0304545980014471	0.900343422309015	545.273636525162	0	18.4441725120545						727	38	5	NaN	NaN	NaN	5.1376E-12	1	24871	157.77	149.29	1	345710			22235	2704	18759	19293	22235	22235		
YEEVSVSGFEEFHR	14	Unmodified	_YEEVSVSGFEEFHR_			0	0	0	Q9BRA2	Q9BRA2	Q9BRA2	TXNDC17	Thioredoxin domain-containing protein 17	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.889009	1713.76346	2.6176	0.0022456	-0.79303	-0.00068033	1.8245	0.0015653	857.888395561909	10.835	0.13299	10.835	10.8	10.933	0	252	37	1.15595906938629	0.0239418187322806	1.15595906938629	466.723374533144	0	9.66661080579905						341	16	4	NaN	NaN	NaN	2.3871E-12	1	24872	119.55	108.76	1	80837			22236	2704	18759	19293	22236	22236		
YEEYDNAIITMMNHPTDAWK	20	Unmodified	_YEEYDNAIITMMNHPTDAWK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.696204	2441.06678	0.67738	0.00055186	-1.2564	-0.0010236	-0.57906	-0.00047176	815.029616180636	15.978	0.15959	15.978	15.934	16.094	0	558	73	0.951016745717027	0.0485286390232953	0.951016745717027	574.585312955656	0	29.3200339174774						819	19	6	NaN	NaN	NaN	1.6048E-07	1	36534	105.78	93.096	1	282700			22237	1503	18760	19294	22237	22237		
YEEYDNAIITMMNHPTDAWK	20	Unmodified	_YEEYDNAIITMMNHPTDAWK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.696204	2441.06678	1.0787	0.00087881	-0.31328	-0.00025523	0.76541	0.00062358	815.029999107071	15.978	0.10639	15.978	15.934	16.041	0	450	91	1.02367897599655	0.060426434074664	1.02367897599655	618.486377127284	0	36.5084437307871						854	13	5	NaN	NaN	NaN	1.4836E-05	1	36535	74.62	68.415	1	221880			22238	1503	18760	19294	22238	22238		
YEFTDALLCHDDELEGR	17	Unmodified	_YEFTDALLCHDDELEGR_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	694.973955	2081.90003	0.12976	9.0182E-05	0.094195	6.5463E-05	0.22396	0.00015565	695.308150705876	13.664	0.053202	13.664	13.637	13.691	0	600	31	0.922661313351899	0.0202735302015807	0.922661313351899	557.997364929675	0	12.2608114880283						157	7	4	NaN	NaN	NaN	0.00026546	1	33054	40.83	37.936	1	30524			22239	2254	18761	19295	22239	22239		
YEFTDALLCHDDELEGR	17	Unmodified	_YEFTDALLCHDDELEGR_			0	0	0	Q8N543	Q8N543	Q8N543	OGFOD1	Prolyl 3-hydroxylase OGFOD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1041.95729	2081.90003	1.1658	0.0012147	0.34465	0.00035911	1.5105	0.0015739	1042.4594164942	13.655	0.062064	13.655	13.629	13.691	0	180	34	1.203763835057	0.02187293336483	1.203763835057	485.334607159769	0	8.81874933678239						158	8	3	NaN	NaN	NaN	0.00016517	1	33056	47.915	46.393	1	35991			22240	2254	18761	19295	22240	22240		
YEGFFGLYR	9	Unmodified	_YEGFFGLYR_			0	0	0	Q9UJS0;O75746	Q9UJS0;O75746	Q9UJS0	SLC25A13;SLC25A12	Calcium-binding mitochondrial carrier protein Aralar2;Calcium-binding mitochondrial carrier protein Aralar1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.279649	1150.54475	0.65278	0.00037619	-0.27566	-0.00015886	0.37712	0.00021733	576.279282759	14.489	0.1862	14.489	14.427	14.613	0	606	40	0.918606045818476	0.0263610708448411	0.918606045818476	372.344037232283	0	10.6850892053392						401	22	4	NaN	NaN	NaN	7.2967E-06	1	8070	105.04	94.961	1	131400			22241	3248;356	18762	19296	22241	22241		
YEGFFSLWK	9	Unmodified	_YEGFFSLWK_			0	0	0	Q02978	Q02978	Q02978	SLC25A11	Mitochondrial 2-oxoglutarate/malate carrier protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	588.78985	1175.56515	-0.33824	-0.00019915	0.089397	5.2636E-05	-0.24885	-0.00014652	588.789879516769	17.415	0.133	17.415	17.371	17.504	0	627	28	0.90440375274676	0.0182676885200254	0.90440375274676	366.49491313271	0	7.40268369845734						330	16	4	NaN	NaN	NaN	0.0011101	1	8750	65.156	37.451	1	110540			22242	1535	18763	19297	22242	22242		
YEGILYTIDTENSTVALAK	19	Unmodified	_YEGILYTIDTENSTVALAK_			0	0	0	Q8ND56	Q8ND56	Q8ND56	LSM14A	Protein LSM14 homolog A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1051.03861	2100.06267	2.1027	0.00221	1.7437	0.0018327	3.8464	0.0040427	1051.54216696021	15.437	0.15086	15.437	15.375	15.526	0	114	70	1.24744674793813	0.0455965602890394	1.24744674793813	502.91789761514	0	18.3826093393953						649	18	4	NaN	NaN	NaN	0.013884	1	33323	28.432	25.179	1	153520			22243	2304	18764	19298	22243	22243		
YEGSGEDGGAAAQSLYIANHAY	22	Unmodified	_YEGSGEDGGAAAQSLYIANHAY_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1122.49563	2242.9767	1.5877	0.0017821	0.15331	0.00017209	1.741	0.0019542	1122.99790677185	11.483	0.079826	11.483	11.465	11.545	0	147	28	1.22562176648663	0.017866598407567	1.22562176648663	493.912110184096	0	7.2000429191051						111	10	2	NaN	NaN	NaN	7.3526E-08	1	35126	74.62	73.659	1	21920			22244	615	18765	19299	22244	22244		
YEHDDIVSTVSVLSSGTQAVSGSK	24	Unmodified	_YEHDDIVSTVSVLSSGTQAVSGSK_			0	0	0	Q9BQA1	Q9BQA1	Q9BQA1	WDR77	Methylosome protein 50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	822.738002	2465.19218	1.909	0.0015706	3.4678	0.0028531	5.3768	0.0044237	823.074828680053	13.371	0.088739	13.371	13.336	13.425	0	330	70	1.10399226369747	0.0460942233022623	1.10399226369747	666.973105451198	0	27.8476654866266						308	11	2	NaN	NaN	NaN	0.0091826	1	36653	64.56	61.815	1	119130			22245	2694	18766	19300	22245	22245		
YEIDLDTSDHAHLEHITR	18	Unmodified	_YEIDLDTSDHAHLEHITR_			0	0	0	P08237	P08237	P08237	PFKM	ATP-dependent 6-phosphofructokinase, muscle type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	542.011904	2164.01851	0.14046	7.6129E-05	1.0438	0.00056578	1.1843	0.00064191	542.263233163138	8.5205	0.10641	8.5205	8.485	8.5914	0	696	34	0.857641857947968	0.0223985529654932	0.857641857947968	691.391648118935	0	18.0566891724997						239	13	4	NaN	NaN	NaN	4.2277E-05	1	34236	59.77	55.464	1	66950			22246	578	18767	19301	22246	22246		
YEIHRDPTLDPSLMEMTEAALR	22	Unmodified	_YEIHRDPTLDPSLMEMTEAALR_			0	0	1	P09923	P09923	P09923	ALPI	Intestinal-type alkaline phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.420963	2587.24106	1.6446	0.00142	0.26022	0.00022468	1.9048	0.0016447	863.755754632758	15.437	0.14197	15.437	15.384	15.526	0	483	40	1.00151498427745	0.0262191597817407	1.00151498427745	604.90183046978	0	15.8360264143196						622	17	6	NaN	NaN	NaN	3.8162E-08	1	37190	95.001	90.135	1	170450			22247	613	18768	19302	22247	22247		
YEILQSVDDAAIVIK	15	Unmodified	_YEILQSVDDAAIVIK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	559.641694	1675.90325	-0.98559	-0.00055158	-0.93394	-0.00052267	-1.9195	-0.0010742	559.975476833572	15.996	0.070921	15.996	15.97	16.041	0	684	19	0.86578508874114	0.0122114546668257	0.86578508874114	524.439040808952	0	7.39694371690302						116	9	3	NaN	NaN	NaN	0.0131	1	23795	48.701	47.551	1	23888			22248	1606	18769	19303	22248	22248		
YEILQSVDDAAIVIK	15	Unmodified	_YEILQSVDDAAIVIK_			0	0	0	Q12906	Q12906	Q12906	ILF3	Interleukin enhancer-binding factor 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	838.958903	1675.90325	1.7374	0.0014576	0.71318	0.00059833	2.4506	0.002056	838.959586213126	15.996	0.18621	15.996	15.952	16.138	-1.7764E-15	213	91	1.18187287897418	0.0598299223148471	1.18187287897418	477.272656479579	0	24.1609622051388						1136	22	4	NaN	NaN	NaN	1.2219E-11	1	23796	172.51	145.93	1	410090			22249	1606	18769	19303	22249	22249		
YEILTPNSIPK	11	Unmodified	_YEILTPNSIPK_			0	0	0	P35579	P35579	P35579	MYH9	Myosin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	637.853178	1273.6918	1.6066	0.0010247	-5.818	-0.003711	-4.2114	-0.0026863	637.849346048163	11.004	0.19509	11.004	10.915	11.11	0	537	43	0.965173861991602	0.028292695105214	0.965173861991602	390.771351726745	0	11.4549048059005						334	23	2	NaN	NaN	NaN	0.033186	1	11603	24.821	18.074	1	131880			22250	972	18770	19304	22250	22250		
YEIMDGAPVK	10	Unmodified	_YEIMDGAPVK_			0	0	0	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	561.778625	1121.5427	0.83436	0.00046873	0.21039	0.00011819	1.0448	0.00058692	561.778052675536	8.2454	0.21294	8.2454	8.1745	8.3874	0	660	58	0.882057989648486	0.0386133059096635	0.882057989648486	357.639271613765	0	15.6561527271409						687	25	5	NaN	NaN	NaN	0.0062289	1	7299	54.436	36.034	1	202340			22251	334	18771	19305	22251	22251		
YEISSVPTFLFFK	13	Unmodified	_YEISSVPTFLFFK_			0	0	0	O76003	O76003	O76003	GLRX3	Glutaredoxin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.416143	1576.81773	0.81303	0.00064182	1.9873	0.0015688	2.8003	0.0022106	789.416771337851	19.242	0.17734	19.242	19.171	19.348	0	411	97	1.04982941439551	0.064348166988911	1.04982941439551	424.168281381052	0	25.9989394728699						898	21	5	NaN	NaN	NaN	2.8726E-05	1	20881	106.35	81.664	1	398020			22252	377	18772	19306	22252	22252		
YELALILK	8	Unmodified	_YELALILK_			0	0	0	P82932	P82932	P82932	MRPS6	28S ribosomal protein S6, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	481.799686	961.584819	-0.45049	-0.00021704	-1.7597	-0.00084783	-2.2102	-0.0010649	481.798962618689	14.24	0.10639	14.24	14.205	14.311	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	345.958405773069	0	8.27678330944019						145	13	2	NaN	NaN	NaN	0.019378	1	3481	42.835	26.287	1	35583			22253	1477	18773	19307	22253	22253		
YELISETGGSHDK	13	Unmodified	_YELISETGGSHDK_			0	0	0	Q12906;Q96SI9	Q12906;Q96SI9	Q12906	ILF3;STRBP	Interleukin enhancer-binding factor 3;Spermatid perinuclear RNA-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.33862	1434.66269	3.4147	0.0024529	-2.0889	-0.0015005	1.3258	0.00095239	718.337154781642	5.0529	0.31038	5.0529	5.0085	5.3189	0	426	70	1.03977710643793	0.0462917369745024	1.03977710643793	420.468999135568	0	18.7196276907814						801	36	5	NaN	NaN	NaN	1.9608E-05	1	16524	125.17	101.05	1	323530			22254	1606;2622	18774	19308	22254	22254		
YELQLANPK	9	Unmodified	_YELQLANPK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.292756	1074.57096	1.1329	0.00060982	-1.0625	-0.00057196	0.070344	3.7866E-05	538.292492079396	7.997	0.18635	7.997	7.9172	8.1036	0	627	34	0.90440375274676	0.0223240803246195	0.90440375274676	366.894140391182	0	9.05632493877812						366	22	3	NaN	NaN	NaN	0.00081495	1	6079	101.41	67.599	1	121520			22255	2064	18775	19309	22255	22255		
YELQQLEGSSDR	12	Unmodified	_YELQQLEGSSDR_			0	0	0	Q92878	Q92878	Q92878	RAD50	DNA repair protein RAD50	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	712.836245	1423.65794	1.8487	0.0013178	0.57801	0.00041202	2.4267	0.0017298	712.836970548184	8.0591	0.23955	8.0591	7.9615	8.2011	0	498	34	0.991429299781895	0.0221977126906285	0.991429299781895	400.947513024434	0	8.97705736566024						413	28	4	NaN	NaN	NaN	3.5798E-05	1	16192	66.664	38.568	1	105890			22256	2436	18776	19310	22256	22256		
YENDPELEK	9	Unmodified	_YENDPELEK_			0	0	0	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.758943	1135.50333	2.4876	0.0014148	1.1631	0.00066154	3.6507	0.0020764	568.759396940425	3.7406	0.15961	3.7406	3.714	3.8736	0	636	37	0.898312834727904	0.0243721251806781	0.898312834727904	364.175582527591	0	9.88044759239943						301	19	3	NaN	NaN	NaN	0.00065641	1	7676	76.572	51.721	1	133520			22257	2757	18777	19311	22257	22257		
YENYELTLK	9	Unmodified	_YENYELTLK_			0	0	0	P04114	P04114	P04114	APOB	Apolipoprotein B-100;Apolipoprotein B-48	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	586.795329	1171.5761	1.3516	0.00079311	-4.7443	-0.0027839	-3.3927	-0.0019908	586.796070483616	8.9198	0.2307	8.9198	8.8576	9.0883	0	585	52	0.932794566565362	0.034438755237733	0.932794566565362	378.014776944232	0	13.9562973950025						616	27	3	NaN	NaN	NaN	0.031685	1	8645	32.14	13.738	1	251900			22258	507	18778	19312	22258	22258		
YEPDSANPDALQCPIVLCGWR	21	Unmodified	_YEPDSANPDALQCPIVLCGWR_			0	0	0	Q08J23	Q08J23	Q08J23	NSUN2	tRNA (cytosine(34)-C(5))-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1231.06738	2460.12021	0.48954	0.00060266	-0.50538	-0.00062215	-0.015837	-1.9496E-05	1231.56807495556	16.005	0.097529	16.005	15.952	16.049	0	63	40	1.28111162701928	0.0257225849725	1.28111162701928	515.993264045991	0	10.3602842248351						368	12	4	NaN	NaN	NaN	0.0011142	1	36623	65.12	63.599	1	73878			22259	1581	18779	19313	22259	22259		
YEPQLPDHWEK	11	Unmodified	_YEPQLPDHWEK_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	481.229736	1440.66738	-1.3161	-0.00063337	-1.5547	-0.00074818	-2.8709	-0.0013816	481.228829505178	8.4938	0.20395	8.4938	8.3697	8.5736	0	804	40	0.78414869089473	0.0266112761847965	0.78414869089473	475.62342515529	0	16.1410029420881						436	24	3	NaN	NaN	NaN	0.036705	1	16683	49.16	35.165	1	81762			22260	570	18780	19314	22260	22260		
YEPVAEIGVGAYGTVYK	17	Unmodified	_YEPVAEIGVGAYGTVYK_			0	0	0	P11802	P11802	P11802	CDK4	Cyclin-dependent kinase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	908.46181	1814.90907	0.56397	0.00051234	0.42828	0.00038908	0.99225	0.00090142	908.963269404205	13.07	0.097535	13.07	13.026	13.123	0	120	28	1.2434810169581	0.0178494602725052	1.2434810169581	501.83618121795	0	7.20357195469546						193	12	3	NaN	NaN	NaN	4.5799E-10	1	27603	83.474	74.318	1	42671			22261	659	18781	19315	22261	22261		
YEQAIQCYTEAISLCPTEK	19	Unmodified	_YEQAIQCYTEAISLCPTEK_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1152.52977	2303.04498	0.73791	0.00085046	0.22492	0.00025923	0.96283	0.0011097	1153.03156221431	13.824	0.062069	13.824	13.797	13.859	0	66	58	1.27913350869533	0.0376100012347553	1.27913350869533	515.393971078658	0	15.1539833464489						328	8	4	NaN	NaN	NaN	8.0028E-06	1	35663	88.421	85.874	1	56830			22262	389	18782	19316	22262	22262		
YEQGFITDPVVLSPK	15	Unmodified	_YEQGFITDPVVLSPK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	846.945795	1691.87704	2.038	0.001726	0.072654	6.1534E-05	2.1106	0.0017876	847.446716726595	13.974	0.23942	13.974	13.841	14.081	0	288	85	1.13199748998575	0.055910394236474	1.13199748998575	457.096213996969	0	22.5764012329143						926	28	5	NaN	NaN	NaN	4.1603E-08	1	24258	151.52	143.05	1	372670			22263	666	18783	19317	22263	22263		
YESDMVTGGYAALINLCCR	19	Unmodified	_YESDMVTGGYAALINLCCR_			0	0	0	P42704	P42704	P42704	LRPPRC	Leucine-rich PPR motif-containing protein, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.9923	2191.97005	0.28092	0.00030817	3.3946	0.0037238	3.6755	0.004032	1097.99905534362	16.581	0.044307	16.581	16.555	16.599	0	135	16	1.23356193185193	0.00992452634230023	1.23356193185193	497.183111231182	0	4.00004795620833						59	6	3	NaN	NaN	NaN	0.04962	1	34585	38.584	36.996	1	8520.1			22264	1055	18784	19318	22264	22264		
YESGDHVAVYPANDSALVNQLGK	23	Unmodified	_YESGDHVAVYPANDSALVNQLGK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	816.399432	2446.17647	1.4308	0.0011681	-0.20356	-0.00016619	1.2272	0.0010019	816.733505951563	11.279	0.10645	11.279	11.243	11.35	0	567	79	0.944945209309785	0.0525945332540456	0.944945209309785	570.910259959718	0	31.7761901501777						646	13	4	NaN	NaN	NaN	9.2374E-18	1	36554	162.14	158.7	1	164160			22265	728	18785	19319	22265	22265		
YESIIATLCENLDSLDEPDAR	21	Unmodified	_YESIIATLCENLDSLDEPDAR_			0	0	0	P63010	P63010	P63010	AP2B1	AP-2 complex subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1212.56539	2423.11623	0.3361	0.00040754	-0.086293	-0.00010464	0.2498	0.0003029	1213.0678948958	19.756	0.026583	19.756	19.738	19.765	0	69	22	1.27715511956461	0.0138487246935988	1.27715511956461	514.443848019714	0	5.57832882819218						61	4	3	NaN	NaN	NaN	0.00067961	1	36456	56.08	54.232	1	8822.1			22266	1423	18786	19320	22266	22266		
YESLTDPSK	9	Unmodified	_YESLTDPSK_			0	0	0	P08238;Q58FF7;Q58FF8;P07900;Q58FF6	P08238;Q58FF8;P07900;Q58FF6	P08238	HSP90AB1;HSP90AB3P;HSP90AB2P;HSP90AA1;HSP90AB4P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Putative heat shock protein HSP 90-beta 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.250754	1038.48696	2.1015	0.0010933	1.3073	0.00068013	3.4088	0.0017734	520.251455554538	4.3081	0.41672	4.3081	4.1928	4.6095	0	687	67	0.863749705078866	0.0447691415527759	0.863749705078866	350.555846618554	0	18.1697130860222						1683	48	5	NaN	NaN	NaN	2.5157E-08	1	5190	129.72	109.06	1	2204600			22267	579;567;1959;1958	18787	19321	22267	22267		
YESSALPSGQLTSLSEYASR	20	Unmodified	_YESSALPSGQLTSLSEYASR_			0	0	0	Q12931	Q12931	Q12931	TRAP1	Heat shock protein 75 kDa, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.51857	2145.02259	1.2245	0.0013145	-0.53452	-0.00057381	0.68997	0.0007407	1074.01943888264	13.398	0.14191	13.398	13.345	13.487	0	87	106	1.26527909472281	0.0693956361585035	1.26527909472281	510.036910128966	0	27.973540375668						1072	17	5	NaN	NaN	NaN	4.3456E-22	1	33957	157.7	146.02	1	324210			22268	1608	18788	19322	22268	22268		
YETEINITK	9	Unmodified	_YETEINITK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	555.787504	1109.56045	0.77511	0.00043079	-0.21776	-0.00012103	0.55735	0.00030977	555.787521606661	6.7998	0.10641	6.7998	6.7555	6.8619	0	648	31	0.890187667287968	0.0203185572291886	0.890187667287968	360.982853065237	0	8.23944324134197						235	13	3	NaN	NaN	NaN	0.020055	1	6977	53.517	32.242	1	89845			22269	718	18789	19323	22269	22269		
YETELAMR	8	Unmodified	_YETELAMR_			0	0	0	CON__P05784;P05783	CON__P05784;P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.742042	1011.46953	0.62108	0.00031473	0.63562	0.00032209	1.2567	0.00063682	506.742647895737	6.2146	0.23946	6.2146	6.1436	6.3831	0	696	64	0.857641857947968	0.0427668297358818	0.857641857947968	348.198571897586	0	17.3631322918997						779	28	5	NaN	NaN	NaN	0.0022429	1	4538	81.32	68.493	1	661840		+	22270	536;27	18790	19324	22270	22270		
YETELAMR	8	Oxidation (M)	_YETELAM(Oxidation (M))R_	YETELAM(1)R	YETELAM(58)R	0	1	0	CON__P05784;P05783	CON__P05784;P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	514.739499	1027.46445	1.5752	0.00081079	1.1251	0.00057911	2.7002	0.0013899	514.740009843506	4.1219	0.21283	4.1219	4.0243	4.2371	0	672	40	0.873923798053065	0.0264416320907981	0.873923798053065	354.734815940425	0	10.7329351984578						420	25	3	NaN	NaN	NaN	0.049709	1	4916	58.286	45.459	1	115790		+	22271	536;27	18790	19325	22271	22271	3	
YETFISDVLQR	11	Unmodified	_YETFISDVLQR_			0	0	0	Q9UBK9	Q9UBK9	Q9UBK9	UXT	Protein UXT	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.851167	1369.68778	0.85214	0.00058444	0.94723	0.00064966	1.7994	0.0012341	685.851146766406	14.95	0.13308	14.95	14.888	15.021	0	465	31	1.01360860968299	0.0201476911078267	1.01360860968299	410.072498470494	0	8.15108904173792						220	16	3	NaN	NaN	NaN	4.3581E-05	1	14482	120.33	93.386	1	77904			22272	3177	18791	19326	22272	22272		
YETGQLFLHSIFGYR	15	Unmodified	_YETGQLFLHSIFGYR_			0	0	0	Q9Y2S7	Q9Y2S7	Q9Y2S7	POLDIP2	Polymerase delta-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	610.9773	1829.91007	-1.118	-0.00068306	-0.41372	-0.00025278	-1.5317	-0.00093584	611.311613514241	16.635	0.097521	16.635	16.59	16.688	0	693	25	0.85967808974117	0.0162887244469265	0.85967808974117	520.380641104961	0	9.85989636309762						216	12	4	NaN	NaN	NaN	2.6798E-06	1	27967	86.838	78.032	1	42143			22273	3351	18792	19327	22273	22273		
YETIHLTEEPTK	12	Unmodified	_YETIHLTEEPTK_			0	0	0	Q9H2P0	Q9H2P0	Q9H2P0	ADNP	Activity-dependent neuroprotector homeobox protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	730.867014	1459.71947	1.5932	0.0011645	0.98355	0.00071884	2.5768	0.0018833	730.867420267366	6.5249	0.14187	6.5249	6.4717	6.6136	0	468	31	1.01159370163332	0.0201504747888646	1.01159370163332	409.005012439346	0	8.14718911196388						286	17	3	NaN	NaN	NaN	0.00067216	1	17254	50.09	47.61	1	65350			22274	2871	18793	19328	22274	22274		
YETSGIGEAR	10	Unmodified	_YETSGIGEAR_			0	0	0	P61764	P61764	P61764	STXBP1	Syntaxin-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	541.759278	1081.504	1.9964	0.0010816	-3.5322	-0.0019136	-1.5358	-0.00083203	541.756886204009	3.7228	0.2039	3.7228	3.6608	3.8647	0	663	79	0.880024865079826	0.0528356152487123	0.880024865079826	356.975274813665	0	21.4323583591553						417	24	3	NaN	NaN	NaN	0.031265	1	6234	56.014	19.445	1	120550			22275	1350	18794	19329	22275	22275		
YEWDVAEAR	9	Unmodified	_YEWDVAEAR_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	569.76182	1137.50909	1.7213	0.00098075	1.0192	0.00058068	2.7405	0.0015614	569.762377161435	8.8576	0.27505	8.8576	8.7866	9.0617	0	603	55	0.920633820089869	0.0364974218210178	0.920633820089869	373.216604900177	0	14.7957239484426						1195	32	5	NaN	NaN	NaN	5.2001E-06	1	7723	141.93	119.54	1	2090400			22276	679	18795	19330	22276	22276		
YEWDVAEARK	10	Unmodified	_YEWDVAEARK_			0	0	1	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	422.875293	1265.60405	-1.5923	-0.00067336	-0.36298	-0.0001535	-1.9553	-0.00082686	422.875005417153	6.6047	0.070956	6.6047	6.5693	6.6402	0	855	16	0.749315378969369	0.0102565166721267	0.749315378969369	455.091877848059	0	6.22922945865338						74	9	3	NaN	NaN	NaN	0.036349	1	11374	40.502	38.703	1	13034			22277	679	18796	19331	22277	22277		
YEYGIFNQK	9	Unmodified	_YEYGIFNQK_			0	0	0	P06737	P06737	P06737	PYGL	Glycogen phosphorylase, liver form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	581.282389	1160.55022	0.71646	0.00041647	1.8483	0.0010744	2.5648	0.0014909	581.283195824299	9.2125	0.10641	9.2125	9.1592	9.2656	0	594	43	0.926715457081489	0.0283672188304905	0.926715457081489	375.592706350188	0	11.497078645614						210	13	3	NaN	NaN	NaN	0.0094542	1	8352	62.88	53.487	1	60856			22278	545	18797	19332	22278	22278		
YEYHWADGTNIK	12	Unmodified	_YEYHWADGTNIK_			0	0	0	Q7L9L4;Q9H8S9	Q7L9L4	Q7L9L4	MOB1B;MOB1A	MOB kinase activator 1B;MOB kinase activator 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.565008	1495.67319	-1.1148	-0.00055692	-3.3411	-0.0016691	-4.4559	-0.002226	499.563541487523	7.6156	0.15967	7.6156	7.5713	7.7309	0	771	61	0.806643990516186	0.0408806415384884	0.806643990516186	489.09696451545	0	24.7873881402426						610	19	6	NaN	NaN	NaN	0.0011056	1	18403	55.754	47.753	1	153100			22279	2122	18798	19333	22279	22279		
YEYHWADGTNIK	12	Unmodified	_YEYHWADGTNIK_			0	0	0	Q7L9L4;Q9H8S9	Q7L9L4	Q7L9L4	MOB1B;MOB1A	MOB kinase activator 1B;MOB kinase activator 1A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.843873	1495.67319	1.8744	0.0014037	0.71924	0.0005386	2.5937	0.0019423	749.346158110224	7.6156	0.21291	7.6156	7.5801	7.7931	0	426	46	1.03977710643793	0.0301777503680323	1.03977710643793	420.305158556352	0	12.1986376452952						351	25	3	NaN	NaN	NaN	1.8581E-07	1	18404	129.69	118.9	1	106240			22280	2122	18798	19333	22280	22280		
YEYQPFAGK	9	Unmodified	_YEYQPFAGK_			0	0	0	O75083	O75083	O75083	WDR1	WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.763832	1101.51311	0.71599	0.00039505	0.11951	6.5941E-05	0.83549	0.000461	551.763812830696	7.2432	0.15961	7.2432	7.1989	7.3585	0	657	40	0.884090832094921	0.0264269571469923	0.884090832094921	358.542636536826	0	10.7174405017595						423	19	3	NaN	NaN	NaN	0.0010834	1	6749	67.464	45.078	1	170180			22281	300	18799	19334	22281	22281		
YFACLMR	7	Unmodified	_YFACLMR_			0	0	0	Q9Y6M9	Q9Y6M9	Q9Y6M9	NDUFB9	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	480.725141	959.435729	-1.2181	-0.00058557	6.5209	0.0031348	5.3028	0.0025492	480.728204765017	12.21	0.11533	12.21	12.165	12.281	0	741	34	0.827064408645228	0.0224484086173647	0.827064408645228	336.028551327393	0	9.12057893974037						268	14	3	NaN	NaN	NaN	0.063971	1	3421	32.971	8.152	1	65998			22282	3472	18800	19335	22282	22282		
YFAEALGPLQSFQARPDDLLINTYPK	26	Unmodified	_YFAEALGPLQSFQARPDDLLINTYPK_			0	0	1	P0DMN0;P0DMM9	P0DMN0	P0DMN0	SULT1A4;SULT1A3	Sulfotransferase 1A4;Sulfotransferase 1A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	989.846546	2966.51781	1.0169	0.0010066	-0.096241	-9.5264E-05	0.92069	0.00091134	990.180754159901	18.266	0.12415	18.266	18.204	18.328	0	381	49	1.06991323971056	0.0321075493337244	1.06991323971056	645.771790841911	0	19.3792812942414						459	15	4	NaN	NaN	NaN	0.00046688	1	38168	51.785	47.918	1	81850			22283	617	18801	19336	22283	22283		
YFAGNLASGGAAGATSLCFVYPLDFAR	27	Unmodified	_YFAGNLASGGAAGATSLCFVYPLDFAR_			0	0	0	P12236;P12235	P12236	P12236	SLC25A6;SLC25A4	ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	932.786522	2795.33774	0.73702	0.00068748	-0.59285	-0.00055301	0.14416	0.00013447	933.454088698196	19.472	0.053208	19.472	19.454	19.508	0	429	46	1.03776581230406	0.0301860841315895	1.03776581230406	626.54745551543	0	18.2247420182701						156	7	4	NaN	NaN	NaN	0.00051421	1	37887	42.028	41.948	1	23931			22284	665	18802	19337	22284	22284		
YFAYDCEASFPGISTGPMK	19	Unmodified	_YFAYDCEASFPGISTGPMK_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1070.97136	2139.92816	0.85878	0.00091973	2.0591	0.0022052	2.9179	0.003125	1071.47530832412	14.728	0.062079	14.728	14.693	14.755	0	150	25	1.22363604450103	0.015889045666919	1.22363604450103	493.258047373096	0	6.40500880593322						78	8	2	NaN	NaN	NaN	0.05863	1	33873	17.889	17.675	1	20807			22285	570	18803	19338	22285	22285		
YFDEHYEYR	9	Unmodified	_YFDEHYEYR_			0	0	0	P33552	P33552	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	441.187649	1320.54112	-1.7773	-0.00078411	0.49953	0.00022039	-1.2777	-0.00056372	441.188022714022	5.9485	0.071009	5.9485	5.9219	5.9929	0	828	22	0.767766820543916	0.0143431242639176	0.767766820543916	466.089116519323	0	8.70729749894662						109	9	3	NaN	NaN	NaN	0.010451	1	12990	34.781	30.578	1	24584			22286	948	18804	19339	22286	22286		
YFDEHYEYR	9	Unmodified	_YFDEHYEYR_			0	0	0	P33552	P33552	P33552	CKS2	Cyclin-dependent kinases regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.277835	1320.54112	1.6557	0.0010948	0.9573	0.00063304	2.613	0.0017279	661.278502263221	5.9485	0.11532	5.9485	5.913	6.0283	0	513	31	0.981336640919867	0.0201950922586444	0.981336640919867	397.163933657057	0	8.17330358162513						245	14	4	NaN	NaN	NaN	0.00015349	1	12991	103.8	97.113	1	78641			22287	948	18804	19339	22287	22287		
YFDEISQDTGK	11	Unmodified	_YFDEISQDTGK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.796057	1301.57756	2.0363	0.0013273	0.79846	0.00052043	2.8348	0.0018477	651.796533387106	7.3142	0.22168	7.3142	7.261	7.4826	8.8818E-16	543	37	0.961130371139249	0.0242643069631547	0.961130371139249	389.044788053074	0	9.82166669912425						531	26	4	NaN	NaN	NaN	0.047798	1	12387	49.16	40.397	1	388970			22288	1392	18805	19340	22288	22288		
YFDENAAEDFEK	12	Unmodified	_YFDENAAEDFEK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.309529	1476.6045	1.2109	0.00089524	0.91774	0.00067849	2.1287	0.0015737	739.31000820281	9.6026	0.088672	9.6026	9.5672	9.6558	0	459	28	1.01763759082241	0.0181291645901349	1.01763759082241	411.404484591002	0	7.32915104702687						197	11	3	NaN	NaN	NaN	3.5798E-05	1	17781	58.889	57.09	1	55332			22289	3409	18806	19341	22289	22289		
YFDFLSSYSAVNQGHCHPK	19	Unmodified	_YFDFLSSYSAVNQGHCHPK_			0	0	0	P04181	P04181	P04181	OAT	Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	565.008736	2256.00584	-0.98052	-0.000554	0.9753	0.00055105	-0.0052291	-2.9545E-06	565.259790458341	11.74	0.079795	11.74	11.695	11.775	0	711	19	0.847456455381371	0.0122267289803111	0.847456455381371	683.003266241544	0	9.85407070295378						132	10	4	NaN	NaN	NaN	0.063872	1	35239	7.9995	7.877	1	27838			22290	510	18807	19342	22290	22290		
YFDGSGGNNHAVEHYR	16	Unmodified	_YFDGSGGNNHAVEHYR_			0	0	0	P45974	P45974	P45974	USP5	Ubiquitin carboxyl-terminal hydrolase 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	608.267913	1821.78191	1.7305	0.0010526	0.65582	0.00039892	2.3864	0.0014515	608.268312320769	3.8292	0.070914	3.8292	3.8026	3.8736	0	666	28	0.877991458330206	0.0183032026669903	0.877991458330206	531.483908970197	0	11.079672367914						127	9	4	NaN	NaN	NaN	3.9391E-05	1	27765	72.327	68.344	1	31432			22291	1072	18808	19343	22291	22291		
YFDSGDYNMAK	11	Unmodified	_YFDSGDYNMAK_			0	0	0	P56211;O43768	P56211;O43768	P56211	ARPP19;ENSA	cAMP-regulated phosphoprotein 19;Alpha-endosulfine	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.771528	1309.5285	1.3915	0.00091251	1.6409	0.0010761	3.0324	0.0019886	655.772580606382	7.5003	0.14189	7.5003	7.456	7.5979	0	525	34	0.973257487423603	0.0222253598495629	0.973257487423603	393.928456949934	0	8.99577123611141						356	17	4	NaN	NaN	NaN	3.6241E-05	1	12629	83.358	75.711	1	128960			22292	1285;228	18809	19344	22292	22292		
YFDTVPVAAAMCVLK	15	Unmodified	_YFDTVPVAAAMCVLK_			0	0	0	Q15393	Q15393	Q15393	SF3B3	Splicing factor 3B subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	842.925494	1683.83644	1.6661	0.0014044	-0.079172	-6.6736E-05	1.5869	0.0013377	842.925416755211	17.566	0.16847	17.566	17.468	17.637	0	336	37	1.09998710857178	0.024034244886211	1.09998710857178	444.187778242621	0	9.70531177552294						358	20	4	NaN	NaN	NaN	0.0041403	1	24012	39.039	36.16	1	70065			22293	1841	18810	19345	22293	22293		
YFEADPPGQVAASPDPTT	18	Unmodified	_YFEADPPGQVAASPDPTT_			0	0	0	O43598	O43598	O43598	DNPH1	2-deoxynucleoside 5-phosphate N-hydrolase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	931.925788	1861.83702	2.4485	0.0022819	0.13643	0.00012714	2.585	0.002409	931.926053851626	10.693	0.15958	10.693	10.605	10.764	0	339	37	1.09798411722691	0.0240375557134762	1.09798411722691	443.032756268628	0	9.69906977215516						403	19	4	NaN	NaN	NaN	2.2473E-10	1	28729	147.02	133.8	1	94126			22294	210	18811	19346	22294	22294		
YFEEYALVNQDILENK	16	Unmodified	_YFEEYALVNQDILENK_			0	0	0	P49642	P49642	P49642	PRIM1	DNA primase small subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	994.486013	1986.95747	2.0309	0.0020197	2.495	0.0024813	4.526	0.004501	994.990005796694	15.535	0.11528	15.535	15.482	15.597	0	198	34	1.1918274123006	0.0218939620347083	1.1918274123006	480.67416359093	0	8.83002167940634						230	14	3	NaN	NaN	NaN	2.3297E-06	1	31385	62.398	60.923	1	47096			22295	1140	18812	19347	22295	22295		
YFEITDESPYVHYLNTFSSK	20	Unmodified	_YFEITDESPYVHYLNTFSSK_			0	0	0	Q9ULV4	Q9ULV4	Q9ULV4	CORO1C	Coronin-1C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	814.049629	2439.12706	1.0613	0.00086393	-1.0091	-0.00082148	0.052139	4.2444E-05	814.382948652024	16.076	0.11529	16.076	16.041	16.156	0	516	40	0.979317271586824	0.0262590697317363	0.979317271586824	591.686587035582	0	15.8652765544765						427	14	5	NaN	NaN	NaN	1.0999E-11	1	36524	94.63	92.782	1	171540			22296	3280	18813	19348	22296	22296		
YFELEVR	7	Unmodified	_YFELEVR_			0	0	0	Q14160	Q14160	Q14160	SCRIB	Protein scribble homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.247818	954.481082	0.16592	7.9352E-05	-0.48113	-0.0002301	-0.31521	-0.00015075	478.247682742543	10.374	0.1064	10.374	10.339	10.445	0	669	28	0.875957769340875	0.0183057433537801	0.875957769340875	355.919598558923	0	7.43799878697649						149	13	2	NaN	NaN	NaN	0.018744	1	3325	56.091	7.0326	1	40482			22297	1730	18814	19349	22297	22297		
YFEQLLEEEREK	12	Unmodified	_YFEQLLEEEREK_			0	0	1	O15460	O15460	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	538.266627	1611.77805	0.0033871	1.8232E-06	0.36651	0.00019728	0.3699	0.0001991	538.266659516492	10.764	0.12413	10.764	10.729	10.853	0	714	28	0.845418525735192	0.018341368585978	0.845418525735192	512.2690767649	0	11.1136859036451						218	15	4	NaN	NaN	NaN	0.0006251	1	21948	57.888	48.374	1	49540			22298	177	18815	19350	22298	22298		
YFEVDFPMIVTR	12	Unmodified	_YFEVDFPMIVTR_			0	0	0	Q9UIC8	Q9UIC8	Q9UIC8	LCMT1	Leucine carboxyl methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	758.87887	1515.74319	0.47043	0.000357	0.76324	0.00057921	1.2337	0.0009362	759.380262842726	18.169	0.062065	18.169	18.142	18.204	0	420	31	1.04379886199097	0.0201060050174831	1.04379886199097	421.879632802302	0	8.12638748974837						153	8	3	NaN	NaN	NaN	0.00044234	1	19006	58.889	48.187	1	28053			22299	3236	18816	19351	22299	22299		
YFFDFLDEQAEK	12	Unmodified	_YFFDFLDEQAEK_			0	0	0	O15031	O15031	O15031	PLXNB2	Plexin-B2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	776.353739	1550.69293	1.3503	0.0010483	2.19	0.0017002	3.5402	0.0027485	776.355897598877	17.77	0.14187	17.77	17.708	17.849	0	414	37	1.04781950764076	0.0241272072846639	1.04781950764076	423.418293741203	0	9.74967622450026						256	17	3	NaN	NaN	NaN	0.0032447	1	20061	57.293	44.697	1	63384			22300	139	18817	19352	22300	22300		
YFFFDDGNGLK	11	Unmodified	_YFFFDDGNGLK_			0	0	0	P61009	P61009	P61009	SPCS3	Signal peptidase complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.806228	1321.5979	0.32471	0.00021489	3.6958	0.0024459	4.0205	0.0026608	661.807886169554	14.976	0.10641	14.976	14.95	15.056	0	513	34	0.981336640919867	0.0222130658502994	0.981336640919867	397.160633743712	0	8.98993774677166						190	13	3	NaN	NaN	NaN	0.024798	1	13019	36.211	32.318	1	44798			22301	1320	18818	19353	22301	22301		
YFGCELGAQTQFDVK	15	Unmodified	_YFGCELGAQTQFDVK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.908887	1761.80322	2.1585	0.0019036	3.5229	0.0031069	5.6814	0.0050105	882.413063237241	12.219	0.22174	12.219	12.112	12.334	0	300	34	1.12400150285141	0.0219965339302892	1.12400150285141	453.721062903934	0	8.87925036553315						298	26	3	NaN	NaN	NaN	0.0043229	1	26186	58.313	55.834	1	72526			22302	1261	18819	19354	22302	22302		
YFGDIISVGQR	11	Unmodified	_YFGDIISVGQR_			0	0	0	Q96CN7	Q96CN7	Q96CN7	ISOC1	Isochorismatase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.827495	1253.64044	0.82755	0.00051956	-1.9157	-0.0012027	-1.0881	-0.00068316	627.826143041294	12.609	0.1596	12.609	12.564	12.724	1.7764E-15	579	34	0.936845902828289	0.022280809347793	0.936845902828289	379.367222604317	0	9.02241097936223						388	19	4	NaN	NaN	NaN	4.0518E-06	1	11030	115.86	104.5	1	175980			22303	2493	18820	19355	22303	22303		
YFHPPAHLQAK	11	Unmodified	_YFHPPAHLQAK_			0	0	0	Q9NR56;Q5VZF2	Q9NR56	Q9NR56	MBNL1;MBNL2	Muscleblind-like protein 1;Muscleblind-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	654.846022	1307.67749	2.0589	0.0013483	-1.6387	-0.0010731	0.42027	0.00027521	654.844544045604	4.4056	0.079798	4.4056	4.3613	4.4411	0	501	19	0.98941132619024	0.0121086791103591	0.98941132619024	400.472696286946	0	4.90109143026581						71	10	2	NaN	NaN	NaN	0.039529	1	12594	39.324	24.869	1	12817			22304	2014	18821	19356	22304	22304		
YFHVVIAGPQDSPFEGGTFK	20	Unmodified	_YFHVVIAGPQDSPFEGGTFK_			0	0	0	P61088	P61088	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	732.696861	2195.06875	0.94165	0.00068994	-1.3582	-0.00099512	-0.41651	-0.00030517	733.030217718467	14.232	0.21279	14.232	14.152	14.365	0	594	55	0.926715457081489	0.0364873075787652	0.926715457081489	560.257880905859	0	22.0588762902676						1187	25	6	NaN	NaN	NaN	3.6758E-11	1	34622	179.21	169.3	1	653050			22305	1328	18822	19357	22305	22305		
YFHVVIAGPQDSPFEGGTFK	20	Unmodified	_YFHVVIAGPQDSPFEGGTFK_			0	0	0	P61088	P61088	P61088	UBE2N	Ubiquitin-conjugating enzyme E2 N	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1098.54165	2195.06875	1.2679	0.0013928	-0.25444	-0.00027952	1.0134	0.0011133	1099.04289042677	14.232	0.22166	14.232	14.134	14.356	0	111	82	1.24942920585258	0.0535190750635874	1.24942920585258	503.573898733638	0	21.5704972799949						905	26	4	NaN	NaN	NaN	0.00048032	1	34623	39.82	37.972	1	198880			22306	1328	18822	19357	22306	22306		
YFIADLPHLQDSFVDK	16	Unmodified	_YFIADLPHLQDSFVDK_			0	0	0	Q96HW7	Q96HW7	Q96HW7	INTS4	Integrator complex subunit 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.656115	1906.94651	-1.1903	-0.00075778	0.25362	0.00016147	-0.93663	-0.00059631	636.990620106685	15.81	0.062097	15.81	15.766	15.828	0	729	16	0.835224628594324	0.0101981484135517	0.835224628594324	505.424954469069	0	6.17127239921433						84	8	3	NaN	NaN	NaN	0.052675	1	29743	14.975	14.236	1	13952			22307	2552	18823	19358	22307	22307		
YFILPDSLPLDTLLVDVEPK	20	Unmodified	_YFILPDSLPLDTLLVDVEPK_			0	0	0	P62314	P62314	P62314	SNRPD1	Small nuclear ribonucleoprotein Sm D1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1144.12723	2286.2399	-0.083339	-9.5351E-05	-0.96141	-0.0011	-1.0448	-0.0011953	1144.62815522037	20.182	0.035461	20.182	20.173	20.208	0	57	46	1.28506705146927	0.0296758447467329	1.28506705146927	517.807572166983	0	11.9576461809841						107	5	3	NaN	NaN	NaN	8.7699E-08	1	35533	91.457	88.711	1	59339			22308	1385	18824	19359	22308	22308		
YFLHQSHEER	10	Unmodified	_YFLHQSHEER_			0	0	0	P02794	P02794	P02794	FTH1	Ferritin heavy chain;Ferritin heavy chain, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	449.214309	1344.6211	0.56929	0.00025573	0.38893	0.00017471	0.95822	0.00043045	449.214617815984	2.7119	0.20397	2.7119	2.6853	2.8892	0	813	22	0.778007628350577	0.0143331381547551	0.778007628350577	472.218550265346	0	8.69962385142765						200	24	3	NaN	NaN	NaN	0.0038726	1	13726	52.591	48.388	1	38525			22309	496	18825	19360	22309	22309		
YFLNHIDQTTTWQDPR	16	Unmodified	_YFLNHIDQTTTWQDPR_			0	0	0	P46937	P46937	P46937	YAP1	Transcriptional coactivator YAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.993789	2033.95954	0.59739	0.00040563	-0.39153	-0.00026584	0.20587	0.00013978	679.327498232038	11.305	0.088722	11.305	11.261	11.35	0	624	43	0.906433495720521	0.0284262615360348	0.906433495720521	548.268796457965	0	17.1940161895412						295	11	4	NaN	NaN	NaN	0.0013352	1	32222	42.941	37.038	1	61375			22310	1094	18826	19361	22310	22310		
YFLNLVLVDEEDRR	14	Unmodified	_YFLNLVLVDEEDRR_			0	0	1	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.312459	1779.91555	-0.19478	-0.00011576	0.20933	0.00012441	0.014556	8.6509E-06	594.312623144796	15.322	0.10642	15.322	15.278	15.384	0	615	31	0.912521036363781	0.0202903977808542	0.912521036363781	552.484115095873	0	12.2847825049258						184	13	4	NaN	NaN	NaN	0.00038894	1	26680	50.09	39.839	1	50441			22311	334	18827	19362	22311	22311		
YFLNLVLVDEEDRR	14	Unmodified	_YFLNLVLVDEEDRR_			0	0	1	O75436	O75436	O75436	VPS26A	Vacuolar protein sorting-associated protein 26A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	890.965051	1779.91555	1.3978	0.0012454	1.8734	0.0016691	3.2712	0.0029145	891.46813825843	15.322	0.11527	15.322	15.278	15.393	0	180	31	1.203763835057	0.0198885785601712	1.203763835057	485.87979148841	0	8.02770287857936						234	14	4	NaN	NaN	NaN	0.00092665	1	26681	68.49	66.507	1	48379			22312	334	18827	19362	22312	22312		
YFLVGAGAIGCELLK	15	Unmodified	_YFLVGAGAIGCELLK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.934176	1609.8538	1.6278	0.0013119	0.59746	0.00048151	2.2253	0.0017934	805.934784203855	17.521	0.13302	17.521	17.477	17.61	0	189	103	1.1977968526266	0.0677420734642853	1.1977968526266	483.865905895966	0	27.3653079586825						899	16	5	NaN	NaN	NaN	5.7811E-12	1	21896	154.66	131.77	1	329570			22313	804	18828	19363	22313	22313		
YFLVGAGAIGCELLK	15	Unmodified	_YFLVGAGAIGCELLK_			0	0	0	P22314	P22314	P22314	UBA1	Ubiquitin-like modifier-activating enzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	805.934176	1609.8538	2.3161	0.0018666	0.17318	0.00013957	2.4893	0.0020062	805.935036907846	17.521	0.29261	17.521	17.468	17.761	0	342	58	1.09598084995137	0.0380725831121829	1.09598084995137	442.735984457817	0	15.3799243533975						1142	34	6	NaN	NaN	NaN	3.9551E-08	1	21897	119.94	102.2	1	908050			22314	804	18828	19363	22314	22314		
YFLWPLQHGTLHFCGFK	17	Unmodified	_YFLWPLQHGTLHFCGFK_			0	0	0	P16083	P16083	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	717.692617	2150.05602	0.05097	3.6581E-05	-0.83656	-0.00060039	-0.78559	-0.00056381	718.026413963729	16.307	0.097545	16.307	16.271	16.369	0	549	31	0.957085760909907	0.0202258527858471	0.957085760909907	578.694749120973	0	12.2294106565079						283	12	5	NaN	NaN	NaN	0.00011717	1	34017	55.578	50.191	1	72608			22315	722	18829	19364	22315	22315		
YFLWPLQHGTLHFCGFK	17	Unmodified	_YFLWPLQHGTLHFCGFK_			0	0	0	P16083	P16083	P16083	NQO2	Ribosyldihydronicotinamide dehydrogenase [quinone]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	538.521282	2150.05602	-0.8448	-0.00045495	0.74116	0.00039913	-0.10365	-5.5817E-05	538.772515334741	16.315	0.088653	16.315	16.271	16.36	0	660	43	0.882057989648486	0.0284617756829997	0.882057989648486	711.104215000625	0	22.9455306704372						242	11	4	NaN	NaN	NaN	0.04615	1	34018	30.068	29.988	1	43542			22316	722	18829	19364	22316	22316		
YFPGMFPFK	9	Unmodified	_YFPGMFPFK_			0	0	0	Q8WTV0	Q8WTV0	Q8WTV0	SCARB1	Scavenger receptor class B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.278063	1132.54157	0.10072	5.7134E-05	-0.66782	-0.00037884	-0.5671	-0.0003217	567.277840098033	15.739	0.3813	15.739	15.588	15.97	0	636	40	0.898312834727904	0.0264086306406944	0.898312834727904	364.187015115505	0	10.7063820024741						754	44	4	NaN	NaN	NaN	0.044943	1	7595	38.322	26.673	1	172570			22317	2362	18830	19365	22317	22317		
YFPTQALNFAFK	12	Unmodified	_YFPTQALNFAFK_			0	0	0	P05141;Q9H0C2;P12236;P12235	P05141;P12236	P12236	SLC25A5;SLC25A31;SLC25A6;SLC25A4	ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed;ADP/ATP translocase 4;ADP/ATP translocase 4, N-terminally processed;ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	723.874445	1445.73434	1.3173	0.00095356	0.036208	2.621E-05	1.3535	0.00097977	723.87507662318	16.573	0.53201	16.573	16.369	16.901	0	459	100	1.01763759082241	0.0664736834066983	1.01763759082241	411.486033504867	0	26.8789130473996						3629	61	5	NaN	NaN	NaN	9.1821E-07	1	16859	114.39	98.812	1	4204500			22318	665;525	18831	19366	22318	22318		
YFQCEPLK	8	Unmodified	_YFQCEPLK_			0	0	0	P30622	P30622	P30622	CLIP1	CAP-Gly domain-containing linker protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.760235	1083.50592	1.1714	0.00063578	1.3817	0.00074991	2.553	0.0013857	542.760959699324	6.5249	0.088666	6.5249	6.4895	6.5781	0	588	31	0.93076847747433	0.0202651042983174	0.93076847747433	377.55023076646	0	8.22019115333342						181	11	3	NaN	NaN	NaN	0.0050231	1	6293	51.43	37.782	1	42949			22319	914	18832	19367	22319	22319		
YFQIGTIVDNPADFYHSR	18	Unmodified	_YFQIGTIVDNPADFYHSR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	715.012961	2142.01705	0.77588	0.00055476	-0.81762	-0.00058461	-0.041743	-2.9847E-05	715.011461305718	15.171	0.13298	15.171	15.136	15.269	0	558	52	0.951016745717027	0.0344053845172715	0.951016745717027	575.039003533835	0	20.803459158959						360	16	4	NaN	NaN	NaN	7.5328E-11	1	33910	131.06	118.38	1	90045			22320	1974	18833	19368	22320	22320		
YFQIGTIVDNPADFYHSR	18	Unmodified	_YFQIGTIVDNPADFYHSR_			0	0	0	Q5QJE6	Q5QJE6	Q5QJE6	DNTTIP2	Deoxynucleotidyltransferase terminal-interacting protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1072.0158	2142.01705	0.5258	0.00056367	1.7317	0.0018564	2.2575	0.00242	1072.51871653437	15.171	0.070949	15.171	15.136	15.207	0	81	28	1.2692388538616	0.0178176976622118	1.2692388538616	511.63770930323	0	7.18241959676538						151	9	4	NaN	NaN	NaN	0.0030022	1	33911	49.487	49.052	1	25747			22321	1974	18833	19368	22321	22321		
YFQINQDEEEEEDED	15	Unmodified	_YFQINQDEEEEEDED_			0	0	0	P35268	P35268	P35268	RPL22	60S ribosomal protein L22	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	966.368697	1930.72284	3.0107	0.0029095	-0.78768	-0.00076119	2.2231	0.0021483	966.367817485679	10.028	0.32805	10.028	9.9662	10.294	0	321	79	1.10999792833052	0.0520312204017357	1.10999792833052	447.762088850186	0	20.988875148214						1650	38	5	NaN	NaN	NaN	4.7014E-45	1	30312	291.71	286.09	1	523850			22322	967	18834	19369	22322	22322		
YFSEADK	7	Unmodified	_YFSEADK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	430.195251	858.375948	-0.34305	-0.00014758	0.83385	0.00035872	0.49079	0.00021114	430.195599770344	3.0932	0.31922	3.0932	3.0488	3.3681	0	837	31	0.761618911097395	0.0204944614564727	0.761618911097395	309.952763252303	0	8.34054258270544						444	37	3	NaN	NaN	NaN	0.018744	1	1682	46.835	38.832	1	93886			22323	666	18835	19370	22323	22323		
YFSLPFCVGSK	11	Unmodified	_YFSLPFCVGSK_			0	0	0	Q9HD45	Q9HD45	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	652.820824	1303.62709	1.0956	0.00071524	-2.0911	-0.0013651	-0.99553	-0.0006499	652.819425774147	15.553	0.15961	15.553	15.5	15.659	0	561	34	0.948993180460448	0.0222592210224549	0.948993180460448	384.125584702798	0	9.00990277520299						358	19	4	NaN	NaN	NaN	0.00051312	1	12456	61.48	45.982	1	131940			22324	2971	18836	19371	22324	22324		
YFSSMAEFLK	10	Unmodified	_YFSSMAEFLK_			0	0	0	Q8WWY3	Q8WWY3	Q8WWY3	PRPF31	U4/U6 small nuclear ribonucleoprotein Prp31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.794275	1221.574	1.0482	0.0006413	-3.3356	-0.0020407	-2.2874	-0.0013994	611.792181135402	9.975	0.12411	9.975	9.9218	10.046	0	570	34	0.942920803299286	0.0222715533643577	0.942920803299286	381.936374487566	0	9.0212415681417						217	15	3	NaN	NaN	NaN	0.065777	1	10056	22.386	17.847	1	85198			22325	2393	18837	19372	22325	22325		
YFTCDEGHGIFVR	13	Unmodified	_YFTCDEGHGIFVR_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.24528	1599.71401	0.24851	0.00013276	2.5487	0.0013617	2.7972	0.0014944	534.247590911081	9.1504	0.16851	9.1504	9.0706	9.2391	0	696	76	0.857641857947968	0.0509341248195246	0.857641857947968	519.708967711974	0	30.8647731986909						523	20	4	NaN	NaN	NaN	0.058453	1	21564	31.425	28.08	1	134940			22326	1736	18838	19373	22326	22326		
YFTDAGLK	8	Unmodified	_YFTDAGLK_			0	0	0	Q9Y6E2	Q9Y6E2	Q9Y6E2	BZW2	Basic leucine zipper and W2 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	457.734543	913.454533	-0.73395	-0.00033595	1.8665	0.00085436	1.1325	0.0005184	457.734588489214	6.7998	0.22164	6.7998	6.6934	6.9151	0	753	43	0.81889964927511	0.0285885886986983	0.81889964927511	332.947782584615	0	11.6235331433845						357	26	3	NaN	NaN	NaN	0.032689	1	2560	44.767	32.214	1	93559			22327	3463	18839	19374	22327	22327		
YFTEAGLK	8	Unmodified	_YFTEAGLK_			0	0	0	Q7L1Q6	Q7L1Q6	Q7L1Q6	BZW1	Basic leucine zipper and W2 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	464.742368	927.470183	-0.50876	-0.00023644	1.8695	0.00086885	1.3608	0.0006324	464.74284426521	6.5072	0.28375	6.5072	6.4008	6.6845	0	738	52	0.829104889055312	0.0346978263217897	0.829104889055312	337.02155327822	0	14.1042653067353						541	33	3	NaN	NaN	NaN	0.040654	1	2821	29.102	0	1	173140			22328	2112	18840	19375	22328	22328		
YFTLGLPTGSTPLGCYK	17	Unmodified	_YFTLGLPTGSTPLGCYK_			0	0	0	P46926;Q8TDQ7	P46926	P46926	GNPDA1;GNPDA2	Glucosamine-6-phosphate isomerase 1;Glucosamine-6-phosphate isomerase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	937.971487	1873.92842	1.343	0.0012597	-0.43855	-0.00041135	0.90445	0.00084835	937.970305838771	16.307	0.29261	16.307	16.227	16.519	0	258	88	1.15196821829984	0.0578236653922581	1.15196821829984	464.792972847705	0	23.330533700213						1235	34	6	NaN	NaN	NaN	8.1348E-11	1	29023	130.71	106.78	1	589570			22329	1092	18841	19376	22329	22329		
YFTWDPSR	8	Unmodified	_YFTWDPSR_			0	0	0	Q14697	Q14697	Q14697	GANAB	Neutral alpha-glucosidase AB	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	536.248349	1070.48214	0.62765	0.00033658	1.3198	0.00070774	1.9475	0.0010443	536.248841731567	10.259	0.27487	10.259	10.161	10.436	0	627	55	0.90440375274676	0.0365480561699901	0.90440375274676	366.911865582973	0	14.8273549640139						800	32	4	NaN	NaN	NaN	0.0030741	1	5959	85.813	60.994	1	312510			22330	1771	18842	19377	22330	22330		
YFVEAGAMAVR	11	Oxidation (M)	_YFVEAGAM(Oxidation (M))AVR_	YFVEAGAM(1)AVR	YFVEAGAM(46)AVR	0	1	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.302798	1228.59104	1.4768	0.00090871	-0.062076	-3.8195E-05	1.4148	0.00087051	615.302616879459	7.3142	0.20394	7.3142	7.2077	7.4117	8.8818E-16	594	34	0.926715457081489	0.0222931596374992	0.926715457081489	375.348322750388	0	9.02941675872597						324	24	3	NaN	NaN	NaN	0.027188	1	10261	46.447	44.647	1	85353			22331	747	18843	19378	22331	22331	251	
YFYVSAEQVVQGMK	14	Unmodified	_YFYVSAEQVVQGMK_			0	0	0	O95881	O95881	O95881	TXNDC12	Thioredoxin domain-containing protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	824.905616	1647.79668	2.2943	0.0018926	0.4298	0.00035455	2.7241	0.0022471	824.906151970132	14.444	0.20395	14.444	14.373	14.577	0	276	64	1.13998907770044	0.0419587426730448	1.13998907770044	460.423220143009	0	16.9464600956043						705	24	5	NaN	NaN	NaN	4.3246E-08	1	22964	145.75	133.73	1	194450			22332	461	18844	19379	22332	22332		
YGAAEPHTIAAFLGGAAAQEVIK	23	Unmodified	_YGAAEPHTIAAFLGGAAAQEVIK_			0	0	0	Q13564	Q13564	Q13564	NAE1	NEDD8-activating enzyme E1 regulatory subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	762.402337	2284.18518	1.2426	0.00094734	1.9597	0.001494	3.2022	0.0024414	762.738246372683	15.65	0.10638	15.65	15.615	15.721	-1.7764E-15	360	34	1.08395544855938	0.0220572074083873	1.08395544855938	655.15867396629	0	13.3317017560863						314	13	5	NaN	NaN	NaN	0.00048496	1	35517	61.503	59.262	1	83636			22333	1685	18845	19380	22333	22333		
YGAATANYMEVVSLLK	16	Unmodified	_YGAATANYMEVVSLLK_			0	0	0	P43304	P43304	P43304	GPD2	Glycerol-3-phosphate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	865.445105	1728.87566	1.5805	0.0013678	1.3029	0.0011276	2.8834	0.0024954	865.446767049467	17.548	0.133	17.548	17.495	17.628	0	267	31	1.14597988355104	0.0199652358426974	1.14597988355104	462.661778659039	0	8.06048313667299						278	16	4	NaN	NaN	NaN	5.9663E-05	1	25301	68.108	62.08	1	78594			22334	1064	18846	19381	22334	22334		
YGAFGLPITVAHVDGQTHMLFGSDR	25	Unmodified	_YGAFGLPITVAHVDGQTHMLFGSDR_			0	0	0	Q9Y2Q3	Q9Y2Q3	Q9Y2Q3	GSTK1	Glutathione S-transferase kappa 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	897.111228	2688.31186	1.6775	0.0015049	-0.42532	-0.00038156	1.2521	0.0011233	897.44492176469	16.041	0.11528	16.041	16.005	16.12	0	309	58	1.11800162319566	0.0380149492667927	1.11800162319566	675.122552610089	0	22.9559144225399						439	14	4	NaN	NaN	NaN	0.0083444	1	37571	25.883	21.017	1	109910			22335	3345	18847	19382	22335	22335		
YGALALQEIFDGIQPK	16	Unmodified	_YGALALQEIFDGIQPK_			0	0	0	P55060	P55060	P55060	CSE1L	Exportin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.972345	1761.93014	1.9212	0.0016945	0.10346	9.1249E-05	2.0247	0.0017857	881.972409697569	19.029	0.18619	19.029	18.976	19.162	0	267	70	1.14597988355104	0.0459358574095619	1.14597988355104	462.592737619014	0	18.5427286630198						925	22	6	NaN	NaN	NaN	5.5017E-18	1	26205	199.51	161.41	1	578330			22336	1264	18848	19383	22336	22336		
YGALVICETSEQK	13	Unmodified	_YGALVICETSEQK_			0	0	0	P43897	P43897	P43897	TSFM	Elongation factor Ts, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	749.366324	1496.71809	2.0945	0.0015695	0.54215	0.00040627	2.6366	0.0019758	749.367279049427	8.3342	0.28381	8.3342	8.2721	8.5559	0	420	49	1.04379886199097	0.0321651748456302	1.04379886199097	421.928157647708	0	13.0019235096183						649	33	4	NaN	NaN	NaN	0.0004692	1	18440	87.942	64.106	1	299150			22337	1069	18849	19384	22337	22337		
YGDFFIR	7	Unmodified	_YGDFFIR_			0	0	0	Q9Y262	Q9Y262	Q9Y262	EIF3L	Eukaryotic translation initiation factor 3 subunit L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.229428	916.444303	-1.8604	-0.00085433	-1.8869	-0.00086654	-3.7473	-0.0017209	459.228723909963	11.305	0.1774	11.305	11.252	11.429	0	786	25	0.796423123669906	0.0163590783051756	0.796423123669906	323.793658051851	0	6.65094426487906						271	21	3	NaN	NaN	NaN	0.020828	1	2628	75.915	51.096	1	85194			22338	3329	18850	19385	22338	22338		
YGDLANWMIPGK	12	Unmodified	_YGDLANWMIPGK_			0	0	0	P55809;Q9BYC2	P55809	P55809	OXCT1;OXCT2	Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial;Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	682.837005	1363.65946	0.87729	0.00059905	-0.33429	-0.00022826	0.543	0.00037078	682.836894017458	14.666	0.15963	14.666	14.604	14.764	0	528	58	0.971237000454584	0.0383839585153254	0.971237000454584	392.947708766716	0	15.5295654355572						603	19	4	NaN	NaN	NaN	3.4724E-05	1	14295	123.42	101.38	1	261280			22339	1279	18851	19386	22339	22339		
YGDLLPADGILIQGNDLK	18	Unmodified	_YGDLLPADGILIQGNDLK_			0	0	0	P20020;P23634	P20020;P23634	P20020	ATP2B1;ATP2B4	Plasma membrane calcium-transporting ATPase 1;Plasma membrane calcium-transporting ATPase 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.012198	1914.00984	1.4298	0.0013698	-1.5631	-0.0014975	-0.13331	-0.00012772	958.01040882572	16.528	0.19506	16.528	16.484	16.679	0	201	64	1.18983705239708	0.0418205460286183	1.18983705239708	479.99830409687	0	16.8710422403646						825	23	4	NaN	NaN	NaN	8E-05	1	29935	73.502	30.561	1	223660			22340	775;825	18852	19387	22340	22340		
YGDSEFTVQSTTGHCVHMR	19	Unmodified	_YGDSEFTVQSTTGHCVHMR_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	553.74411	2210.94734	0.20355	0.00011271	0.50501	0.00027965	0.70856	0.00039236	553.995160796987	6.6313	0.13302	6.6313	6.6047	6.7377	0	705	31	0.851531465363931	0.0203722219271942	0.851531465363931	686.372960869257	0	16.4209343428993						405	16	6	NaN	NaN	NaN	9.4161E-11	1	34799	137.58	96.26	1	162330			22341	1217	18853	19388	22341	22341		
YGDSEFTVQSTTGHCVHMR	19	Unmodified	_YGDSEFTVQSTTGHCVHMR_			0	0	0	P52597	P52597	P52597	HNRNPF	Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	737.989722	2210.94734	1.5495	0.0011435	0.53749	0.00039666	2.087	0.0015402	738.324603647068	6.6313	0.15072	6.6313	6.5959	6.7466	0	516	46	0.979317271586824	0.0302947379404193	0.979317271586824	592.03226678773	0	18.3142510552735						585	18	6	NaN	NaN	NaN	1.1816E-26	1	34800	220.34	188.54	1	279240			22342	1217	18853	19388	22342	22342		
YGDSGEQIAGFVK	13	Unmodified	_YGDSGEQIAGFVK_			0	0	0	P10619	P10619	P10619	CTSA	Lysosomal protective protein;Lysosomal protective protein 32 kDa chain;Lysosomal protective protein 20 kDa chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	685.832974	1369.6514	1.4692	0.0010076	-3.5275	-0.0024193	-2.0583	-0.0014116	686.331977001768	9.576	0.29256	9.576	9.4874	9.78	0	486	76	0.999498404980629	0.0504633304940764	0.999498404980629	404.364102063655	0	20.4157997858678						1040	34	4	NaN	NaN	NaN	0.00036685	1	14469	103.69	97.82	1	339490			22343	630	18854	19389	22343	22343		
YGEAGEGPGWGGAHPR	16	Unmodified	_YGEAGEGPGWGGAHPR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.360753	1596.70695	2.4947	0.0019941	-2.4706	-0.0019749	0.024059	1.9232E-05	799.357613628259	4.8312	0.09746	4.8312	4.7958	4.8933	0	432	37	1.035754240522	0.0241471979634897	1.035754240522	418.436044196865	0	9.75526587193986						201	12	3	NaN	NaN	NaN	2.398E-06	1	21467	86.838	65.75	1	51894			22344	858	18855	19390	22344	22344		
YGEAGEGPGWGGAHPR	16	Unmodified	_YGEAGEGPGWGGAHPR_			0	0	0	P26640	P26640	P26640	VARS	Valine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.242927	1596.70695	-0.36995	-0.00019727	1.659	0.00088464	1.289	0.00068737	533.243658583273	4.8312	0.09746	4.8312	4.7958	4.8933	0	777	73	0.802556497112065	0.0490499547975015	0.802556497112065	486.336507493996	0	29.7234946010589						353	12	3	NaN	NaN	NaN	4.9818E-05	1	21468	103.76	101.28	1	102150			22345	858	18855	19390	22345	22345		
YGEDGLAGESVEFQNLATLK	20	Unmodified	_YGEDGLAGESVEFQNLATLK_			0	0	0	P24928	P24928	P24928	POLR2A	DNA-directed RNA polymerase II subunit RPB1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.02349	2140.03243	0.8764	0.00093864	3.3005	0.0035349	4.1769	0.0044735	1071.52833114635	15.659	0.15072	15.659	15.615	15.766	0	144	37	1.22760721615852	0.0238303019681556	1.22760721615852	494.858700837624	0	9.60619334695014						345	18	4	NaN	NaN	NaN	0.039961	1	33880	27.669	15.294	1	66387			22346	833	18856	19391	22346	22346		
YGEDSGLMYDLK	12	Unmodified	_YGEDSGLMYDLK_			0	0	0	P49590	P49590	P49590	HARS2	Probable histidine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	695.813393	1389.61223	1.2175	0.00084712	5.9174	0.0041174	7.1349	0.0049646	695.818397341876	11.172	0.10641	11.172	11.11	11.216	0	483	22	1.00151498427745	0.0141121546928573	1.00151498427745	405.12174320372	0	5.70849243324659						140	13	3	NaN	NaN	NaN	0.061982	1	15124	44.598	35.083	1	47765			22347	1138	18857	19392	22347	22347		
YGEEGLK	7	Unmodified	_YGEEGLK_			0	0	0	P25685	P25685	P25685	DNAJB1	DnaJ homolog subfamily B member 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	398.197793	794.381034	-0.57752	-0.00022997	0.99891	0.00039776	0.42139	0.0001678	398.198145295215	3.0222	0.24827	3.0222	2.9779	3.2262	0	855	28	0.749315378969369	0.018464305033006	0.749315378969369	305.331737599761	0	7.52385243587833						238	29	2	NaN	NaN	NaN	0.06376	1	939	40.203	6.39	1	59457			22348	839	18858	19393	22348	22348		
YGEGDSLTLQQLK	13	Unmodified	_YGEGDSLTLQQLK_			0	0	0	Q15043	Q15043	Q15043	SLC39A14	Zinc transporter ZIP14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.372463	1450.73037	1.2972	0.00094221	-1.2733	-0.00092491	0.023828	1.7308E-05	726.371316052126	10.197	0.11528	10.197	10.161	10.277	0	477	37	1.0055473068722	0.024187253928307	1.0055473068722	406.584009731504	0	9.77989858791892						284	14	4	NaN	NaN	NaN	0.0015925	1	17005	71.066	62.698	1	73574			22349	1800	18859	19394	22349	22349		
YGEGHQAWIIGIVEK	15	Unmodified	_YGEGHQAWIIGIVEK_			0	0	0	P49903	P49903	P49903	SEPHS1	Selenide, water dikinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	567.298262	1698.87296	-1.1195	-0.0006351	-1.3179	-0.00074762	-2.4374	-0.0013827	567.63192644123	13.274	0.15963	13.274	13.221	13.38	0	753	28	0.81889964927511	0.0183745423602224	0.81889964927511	495.983804924376	0	11.1289282412498						316	19	4	NaN	NaN	NaN	0.00059844	1	24470	44.571	39.183	1	79871			22350	1154	18860	19395	22350	22350		
YGEIPAELR	9	Unmodified	_YGEIPAELR_			0	0	0	Q96RP9	Q96RP9	Q96RP9	GFM1	Elongation factor G, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.277106	1046.53966	0.14397	7.5479E-05	-2.9325	-0.0015374	-2.7885	-0.001462	524.275971157662	8.485	0.16849	8.485	8.3785	8.547	0	699	34	0.85560534332665	0.0223985529654932	0.85560534332665	347.215488094108	0	9.08961656349345						193	20	3	NaN	NaN	NaN	0.0069061	1	5394	49.96	41.778	1	62485			22351	2612	18861	19396	22351	22351		
YGEPGEVFINK	11	Unmodified	_YGEPGEVFINK_			0	0	0	P23246	P23246	P23246	SFPQ	Splicing factor, proline- and glutamine-rich	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.814053	1251.61355	1.5928	0.00099837	0.83156	0.00052123	2.4243	0.0015196	626.814736406722	8.769	0.29295	8.769	8.6623	8.9553	0	582	64	0.934820374997243	0.0425243253207723	0.934820374997243	378.553670383097	0	17.2201418168605						920	34	6	NaN	NaN	NaN	0.00065075	1	10959	102.55	71.953	1	892330			22352	814	18862	19397	22352	22352		
YGEPTLR	7	Unmodified	_YGEPTLR_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	418.21906	834.423567	-0.56006	-0.00023423	0.79406	0.00033209	0.234	9.7863E-05	418.219280772911	4.4677	0.2926	4.4677	4.4056	4.6982	0	807	58	0.782101955086014	0.0388988292110642	0.782101955086014	318.432328518034	0	15.8376343157744						424	34	3	NaN	NaN	NaN	0.010003	1	1363	80.294	62.599	1	95117			22353	1642	18863	19398	22353	22353		
YGETANECGEAFFFYGK	17	Unmodified	_YGETANECGEAFFFYGK_			0	0	0	P49321	P49321	P49321	NASP	Nuclear autoantigenic sperm protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	995.419816	1988.82508	2.0004	0.0019913	0.381	0.00037926	2.3814	0.0023705	995.921754257796	14.214	0.28372	14.214	14.152	14.435	0	231	46	1.16991841121525	0.0299005515005901	1.16991841121525	471.835009656653	0	12.0590691374499						750	33	5	NaN	NaN	NaN	7.3923E-11	1	31430	135.13	106.81	1	205700			22354	1126	18864	19399	22354	22354		
YGEVEEMNVCDNLGDHLVGNVYVK	24	Unmodified	_YGEVEEMNVCDNLGDHLVGNVYVK_			0	0	0	Q01081	Q01081	Q01081	U2AF1	Splicing factor U2AF 35 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	918.423032	2752.24727	2.3484	0.0021568	0.26794	0.00024609	2.6163	0.0024029	918.757883690172	13.85	0.12413	13.85	13.815	13.939	0	378	52	1.07192009927972	0.0341213287703452	1.07192009927972	647.218139356135	0	20.6022285932889						504	15	5	NaN	NaN	NaN	1.5176E-09	1	37761	61.867	59.121	1	108640			22355	1510	18865	19400	22355	22355		
YGFIEGHVVIPR	12	Unmodified	_YGFIEGHVVIPR_			0	0	0	P16070	P16070	P16070	CD44	CD44 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	462.922467	1385.74557	0.40263	0.00018639	-0.13459	-6.2305E-05	0.26804	0.00012408	462.922480471735	10.879	0.23942	10.879	10.826	11.066	0	696	43	0.857641857947968	0.0285092315009251	0.857641857947968	520.396272906726	0	17.2987100373271						684	28	5	NaN	NaN	NaN	0.00038198	1	15020	95.311	89.048	1	579330			22356	721	18866	19401	22356	22356		
YGFIEGHVVIPR	12	Unmodified	_YGFIEGHVVIPR_			0	0	0	P16070	P16070	P16070	CD44	CD44 antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	693.880062	1385.74557	2.0836	0.0014458	-0.33367	-0.00023153	1.7499	0.0012143	693.879555007985	10.871	0.13303	10.871	10.835	10.968	0	417	34	1.04580932352505	0.0221150800336967	1.04580932352505	423.050853877961	0	8.94599357777741						307	16	4	NaN	NaN	NaN	2.7685E-07	1	15021	107.08	100.39	1	99644			22357	721	18866	19401	22357	22357		
YGGDEIPFSPYR	12	Unmodified	_YGGDEIPFSPYR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.827692	1399.64083	0.71979	0.00050445	1.3679	0.00095868	2.0877	0.0014631	700.828581043398	11.855	0.22166	11.855	11.758	11.979	0	507	55	0.985374541851584	0.0363411222858506	0.985374541851584	398.564669698894	0	14.6992709727717						655	26	3	NaN	NaN	NaN	0.00052028	1	15434	81.335	26.752	1	281650			22358	792	18867	19402	22358	22358		
YGGELVPHFPAR	12	Unmodified	_YGGELVPHFPAR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.848761	1341.68297	1.0797	0.00072536	1.0515	0.00070647	2.1312	0.0014318	671.850101723134	9.4874	0.23053	9.4874	9.3721	9.6026	0	486	40	0.999498404980629	0.0262119132032216	0.999498404980629	404.448300709831	0	10.6066840132697						469	27	3	NaN	NaN	NaN	0.065237	1	13666	23.836	14.322	1	155370			22359	326	18868	19403	22359	22359		
YGGPNHIVGSPFK	13	Unmodified	_YGGPNHIVGSPFK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	458.238455	1371.69353	-1.6676	-0.00076418	-0.051514	-2.3606E-05	-1.7192	-0.00078778	458.238152777419	7.066	0.062149	7.066	7.0392	7.1014	0	876	19	0.734948245421186	0.0123189795795753	0.734948245421186	445.993828287127	0	7.47561327959511						83	8	3	NaN	NaN	NaN	0.049586	1	14535	15.616	10.465	1	14020			22360	326	18869	19404	22360	22360		
YGGPNHIVGSPFK	13	Unmodified	_YGGPNHIVGSPFK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	686.854044	1371.69353	1.4558	0.0009999	4.1885	0.0028769	5.6442	0.0038768	686.85677240338	7.0747	0.15082	7.0747	7.0303	7.1811	0	465	46	1.01360860968299	0.0302278047766038	1.01360860968299	410.066493591883	0	12.2289903571346						479	18	4	NaN	NaN	NaN	0.0029134	1	14538	43.306	35.123	1	142940			22361	326	18869	19404	22361	22361		
YGGPPPDSVYSGQQPSVGTEIFVGK	25	Unmodified	_YGGPPPDSVYSGQQPSVGTEIFVGK_			0	0	0	O60506	O60506	O60506	SYNCRIP	Heterogeneous nuclear ribonucleoprotein Q	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	856.086854	2565.23873	1.2368	0.0010588	-0.31723	-0.00027158	0.91961	0.00078726	856.420849750389	13.442	0.1862	13.442	13.363	13.549	0	537	85	0.965173861991602	0.0565306657497275	0.965173861991602	582.978990212304	0	34.1453407853395						814	22	4	NaN	NaN	NaN	0.00059567	1	37089	56.943	55.32	1	133320			22362	263	18870	19405	22362	22362		
YGGPPPDSVYSGVQPGIGTEVFVGK	25	Unmodified	_YGGPPPDSVYSGVQPGIGTEVFVGK_			0	0	0	O43390	O43390	O43390	HNRNPR	Heterogeneous nuclear ribonucleoprotein R	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	836.419945	2506.23801	2.1148	0.0017688	-1.4153	-0.0011838	0.69951	0.00058508	836.753270018751	14.471	0.14187	14.471	14.427	14.568	0	390	124	1.06389100039157	0.0824177135294586	1.06389100039157	642.68708592195	0	49.7878073196433						591	17	3	NaN	NaN	NaN	0.062182	1	36857	35.225	35.172	1	107630			22363	196	18871	19406	22363	22363		
YGGPYHIGGSPFK	13	Unmodified	_YGGPYHIGGSPFK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.340769	1378.66699	1.4949	0.001032	-2.2565	-0.0015577	-0.76154	-0.00052572	690.338695006237	8.1124	0.20405	8.1124	8.0148	8.2188	0	519	40	0.97729762293174	0.0262590697317363	0.97729762293174	395.356555657946	0	10.6228595264333						432	24	4	NaN	NaN	NaN	0.00032145	1	14765	63.212	54.738	1	135670			22364	792	18872	19407	22364	22364		
YGGPYHIGGSPFK	13	Unmodified	_YGGPYHIGGSPFK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	460.562938	1378.66699	-1.0439	-0.00048078	0.75634	0.00034834	-0.28755	-0.00013243	460.56301656256	8.1036	0.1686	8.1036	8.0325	8.2011	0	768	52	0.808687310729125	0.034726792326599	0.808687310729125	490.716689291617	0	21.0724421344781						561	20	4	NaN	NaN	NaN	0.033024	1	14766	26.465	23.12	1	166240			22365	792	18872	19407	22365	22365		
YGGQPVPNFPSK	12	Unmodified	_YGGQPVPNFPSK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	645.827495	1289.64044	2.4335	0.0015716	-0.050912	-3.288E-05	2.3826	0.0015387	646.329202477186	7.6688	0.31046	7.6688	7.5358	7.8463	-8.8818E-16	546	82	0.959108205975751	0.0546211838383772	0.959108205975751	388.264000657508	0	22.111623303402						1126	36	4	NaN	NaN	NaN	0.051095	1	12053	48.785	25.732	1	324760			22366	792	18873	19408	22366	22366		
YGIENVK	7	Unmodified	_YGIENVK_			0	0	0	P00390	P00390	P00390	GSR	Glutathione reductase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	411.721436	821.428318	-1.2218	-0.00050306	1.3968	0.00057511	0.175	7.205E-05	411.721994257217	4.8312	0.19508	4.8312	4.7869	4.9819	0	786	31	0.796423123669906	0.0204488487727063	0.796423123669906	324.346086665316	0	8.32786477328239						324	23	3	NaN	NaN	NaN	0.06995	1	1221	33.813	27.051	1	118920			22367	475	18874	19409	22367	22367		
YGIICMEDLIHEIYTVGK	18	Unmodified	_YGIICMEDLIHEIYTVGK_			0	0	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	718.691843	2153.0537	0.81075	0.00058268	0.2728	0.00019606	1.0836	0.00077874	719.026916097783	19.933	0.088686	19.933	19.924	20.013	0	525	52	0.973257487423603	0.0343577961345568	0.973257487423603	588.467604194261	0	20.7739989036401						405	11	7	NaN	NaN	NaN	3.0608E-14	1	34086	139.61	125.22	1	375840			22368	752	18875	19410	22368	22368		
YGIICMEDLIHEIYTVGK	18	Oxidation (M)	_YGIICM(Oxidation (M))EDLIHEIYTVGK_	YGIICM(1)EDLIHEIYTVGK	YGIICM(75)EDLIHEIYTVGK	0	1	0	P18124	P18124	P18124	RPL7	60S ribosomal protein L7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	724.023481	2169.04861	0.31849	0.00023059	0.4432	0.00032088	0.76168	0.00055148	724.359124239096	16.484	0.1064	16.484	16.422	16.528	0	525	25	0.973257487423603	0.0161650151283204	0.973257487423603	588.439812424501	0	9.77350659292483						233	13	5	NaN	NaN	NaN	3.7424E-07	1	34294	74.733	70.661	1	51255			22369	752	18875	19411	22369	22369	253	
YGINTTDIFQTVDLWEGK	18	Unmodified	_YGINTTDIFQTVDLWEGK_			0	0	0	P37802	P37802	P37802	TAGLN2	Transgelin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1050.51784	2099.02114	2.3131	0.00243	-0.76448	-0.0008031	1.5486	0.0016269	1051.01869767683	19.712	0.12411	19.712	19.676	19.8	0	156	79	1.21966378336455	0.0516536046575036	1.21966378336455	491.71858944641	0	20.8246223003726						761	15	5	NaN	NaN	NaN	2.4234E-45	1	33295	226.09	206.2	1	418590			22370	1001	18876	19412	22370	22370		
YGIQMPAFSK	10	Unmodified	_YGIQMPAFSK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.289159	1140.56377	-0.58956	-0.00033681	1.2033	0.00068746	0.61378	0.00035064	571.289751000804	11.961	0.17735	11.961	11.811	11.988	0	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	366.625322455986	0	9.05219954490303						371	21	4	NaN	NaN	NaN	0.007163	1	7806	67.507	60.357	1	94701			22371	1095	18877	19413	22371	22371		
YGIVDYMIEQSGPPSK	16	Unmodified	_YGIVDYMIEQSGPPSK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	595.290555	1782.84984	-1.0604	-0.00063128	0.45877	0.0002731	-0.60168	-0.00035817	595.625278337444	14.764	0.1419	14.764	14.71	14.852	0	678	28	0.869855008346864	0.0183133685890362	0.869855008346864	526.645356267643	0	11.0876530369849						360	17	5	NaN	NaN	NaN	0.0018959	1	26753	59.731	43.443	1	103370			22372	680	18878	19414	22372	22372		
YGIVDYMIEQSGPPSK	16	Unmodified	_YGIVDYMIEQSGPPSK_			0	0	0	P13667	P13667	P13667	PDIA4	Protein disulfide-isomerase A4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	892.432195	1782.84984	1.6179	0.0014439	1.6508	0.0014733	3.2688	0.0029172	892.433674226377	14.764	0.23943	14.764	14.675	14.914	0	306	127	1.12000185836644	0.0838887617472699	1.12000185836644	452.064874456019	0	33.8599103780618						1550	28	6	NaN	NaN	NaN	2.7698E-12	1	26754	121.86	93.537	1	612680			22373	680	18878	19414	22373	22373		
YGLFPANYVELR	12	Unmodified	_YGLFPANYVELR_			0	0	0	Q14247	Q14247	Q14247	CTTN	Src substrate cortactin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	721.377352	1440.74015	2.1883	0.0015786	-1.0073	-0.00072664	1.181	0.00085196	721.376612570864	15.526	0.25728	15.526	15.437	15.695	-1.7764E-15	405	58	1.05384839605172	0.0381882446994148	1.05384839605172	426.142028794112	0	15.4420845856618						1196	30	5	NaN	NaN	NaN	3.1625E-07	1	16699	116.13	107.66	1	740600			22374	1742	18879	19415	22374	22374		
YGLIYHASLVGQTSPK	16	Unmodified	_YGLIYHASLVGQTSPK_			0	0	0	Q9Y2X3	Q9Y2X3	Q9Y2X3	NOP58	Nucleolar protein 58	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	867.464687	1732.91482	1.7919	0.0015544	-0.34986	-0.00030349	1.4421	0.0012509	867.464083866465	9.4962	0.088676	9.4962	9.4608	9.5494	0	267	31	1.14597988355104	0.0199652358426974	1.14597988355104	462.653207042743	0	8.06033380216599						168	11	3	NaN	NaN	NaN	6.9778E-05	1	25414	55.604	53.302	1	32388			22375	3357	18880	19416	22375	22375		
YGLLQVSEGLSFLHSSVK	18	Unmodified	_YGLLQVSEGLSFLHSSVK_			0	0	0	Q6P3W7	Q6P3W7	Q6P3W7	SCYL2	SCY1-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	655.354436	1963.04148	-0.62361	-0.00040869	-2.7204	-0.0017828	-3.344	-0.0021915	655.351113664209	17.025	0.088676	17.025	16.98	17.069	0	567	19	0.944945209309785	0.0121455956002338	0.944945209309785	571.702972573796	0	7.34822827812923						133	11	4	NaN	NaN	NaN	0.0017573	1	30988	30.862	28.878	1	27142			22376	2065	18881	19417	22376	22376		
YGMGTSVER	9	Unmodified	_YGMGTSVER_			0	0	0	P08559	P08559	P08559	PDHA1	Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	500.231842	998.44913	0.81988	0.00041013	-0.13065	-6.5353E-05	0.68924	0.00034478	500.231128119324	4.1839	0.26603	4.1839	4.0775	4.3435	0	705	28	0.851531465363931	0.018336272903194	0.851531465363931	345.778288774691	0	7.4457437274645						298	31	3	NaN	NaN	NaN	0.0573	1	4244	29.31	23.562	1	96808			22377	583	18882	19418	22377	22377		
YGMNPHQTPAQLYTLQPK	18	Unmodified	_YGMNPHQTPAQLYTLQPK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1044.02257	2086.0306	1.5242	0.0015913	-0.60945	-0.00063627	0.91473	0.000955	1044.52396712731	9.7179	0.062057	9.7179	9.6824	9.7445	0	126	25	1.23951419873743	0.0158716247525592	1.23951419873743	499.741918116176	0	6.39905231060959						100	8	3	NaN	NaN	NaN	0.0030366	1	33125	31.722	30.706	1	14085			22378	929	18883	19419	22378	22378		
YGMNPHQTPAQLYTLQPK	18	Unmodified	_YGMNPHQTPAQLYTLQPK_			0	0	0	P31939	P31939	P31939	ATIC	Bifunctional purine biosynthesis protein PURH;Phosphoribosylaminoimidazolecarboxamide formyltransferase;IMP cyclohydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	696.350808	2086.0306	1.4267	0.00099352	-0.31483	-0.00021923	1.1119	0.00077428	696.684857937068	9.7179	0.14189	9.7179	9.6381	9.78	0	567	67	0.944945209309785	0.0445585519618686	0.944945209309785	571.466495273522	0	26.9472973387648						722	17	4	NaN	NaN	NaN	2.3302E-10	1	33126	93.026	88.719	1	162690			22379	929	18883	19419	22379	22379		
YGMWHFLLGDK	11	Unmodified	_YGMWHFLLGDK_			0	0	0	O95299	O95299	O95299	NDUFA10	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	456.225269	1365.65398	-2.1528	-0.00098216	0.16819	7.6731E-05	-1.9846	-0.00090543	456.2251054622	15.296	0.11527	15.296	15.251	15.367	0	852	25	0.751366682244005	0.0164092837353766	0.751366682244005	455.977233172083	0	9.9582001342493						246	14	4	NaN	NaN	NaN	0.018789	1	14359	28.647	25.768	1	61598			22380	419	18884	19420	22380	22380		
YGPADVEDTTGSGATDSK	18	Unmodified	_YGPADVEDTTGSGATDSK_			0	0	0	P24534	P24534	P24534	EEF1B2	Elongation factor 1-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.88686	1769.75917	3.6458	0.0032298	-2.8851	-0.0025559	0.76072	0.00067391	885.884223535429	5.9663	0.42565	5.9663	5.78	6.2057	0	357	55	1.08596037261705	0.0360911337192322	1.08596037261705	438.349790838284	0	14.5682488199971						1607	49	5	NaN	NaN	NaN	1.9961E-10	1	26393	118.26	115.18	1	545300			22381	829	18885	19421	22381	22381		
YGPFVADFADK	11	Unmodified	_YGPFVADFADK_			0	0	0	P24539	P24539	P24539	ATP5F1	ATP synthase F(0) complex subunit B1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.295496	1228.57644	0.96576	0.00059423	0.19245	0.00011841	1.1582	0.00071264	615.295504062119	12.298	0.23942	12.298	12.183	12.423	0	582	37	0.934820374997243	0.0243080216588687	0.934820374997243	378.631113244374	0	9.84549925058383						810	28	5	NaN	NaN	NaN	0.0060198	1	10257	48.785	41.139	1	356480			22382	830	18886	19422	22382	22382		
YGPIADVSIVYDQQSR	16	Unmodified	_YGPIADVSIVYDQQSR_			0	0	0	P62995	P62995	P62995	TRA2B	Transformer-2 protein homolog beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	905.95214	1809.88973	1.7962	0.0016273	3.6405	0.0032981	5.4367	0.0049254	906.458584549864	13.088	0.31924	13.088	12.928	13.247	0	279	64	1.13799159301878	0.0419356623724711	1.13799159301878	459.273076198364	0	16.9244841336038						744	37	5	NaN	NaN	NaN	7.1413E-07	1	27474	85.813	76.657	1	296390			22383	1421	18887	19423	22383	22383		
YGPIVDVYVPLDFYTR	16	Unmodified	_YGPIVDVYVPLDFYTR_			0	0	0	O75494	O75494	O75494	SRSF10	Serine/arginine-rich splicing factor 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	958.993277	1915.972	0.76706	0.0007356	0.67745	0.00064967	1.4445	0.0013853	959.495682112451	19.091	0.09751	19.091	19.064	19.162	0	204	61	1.18784641916898	0.039837296457305	1.18784641916898	479.191712637486	0	16.0708505814905						438	12	5	NaN	NaN	NaN	1.3916E-06	1	29977	73.891	71.176	1	112070			22384	339	18888	19424	22384	22384		
YGPPPSYPNLK	11	Unmodified	_YGPPPSYPNLK_			0	0	0	Q13435	Q13435	Q13435	SF3B2	Splicing factor 3B subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	616.819138	1231.62372	1.5752	0.00097159	-0.93338	-0.00057572	0.64178	0.00039586	616.819351204618	7.6511	0.31044	7.6511	7.5092	7.8197	0	588	46	0.93076847747433	0.0303829256271585	0.93076847747433	376.979610838703	0	12.3056847715207						319	36	2	NaN	NaN	NaN	0.060677	1	10364	29.755	25.862	1	131530			22385	1667	18889	19425	22385	22385		
YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK	35	Unmodified	_YGPQYGHPPPPPPPPEYGPHADSPVLMVYGLDQSK_			0	0	0	P14866	P14866	P14866	HNRNPL	Heterogeneous nuclear ribonucleoprotein L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	946.958068	3783.80317	2.073	0.001963	0.016635	1.5753E-05	2.0896	0.0019788	947.459749134913	13.797	0.19508	13.797	13.708	13.903	0	501	217	0.98941132619024	0.145004152369345	0.98941132619024	795.439728793399	0	116.576453676468						3302	23	6	NaN	NaN	NaN	5.1558E-16	1	38733	75.341	73.87	1	690110			22386	704	18890	19426	22386	22386		
YGPSLMPGGNK	11	Unmodified	_YGPSLMPGGNK_			0	0	0	P52209	P52209	P52209	PGD	6-phosphogluconate dehydrogenase, decarboxylating	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	560.776416	1119.53828	0.98789	0.00055399	0.12218	6.8513E-05	1.1101	0.0006225	560.777091164503	7.1457	0.36364	7.1457	6.9771	7.3408	0	627	70	0.90440375274676	0.046716501410481	0.90440375274676	366.707557220917	0	18.942086498553						1317	42	4	NaN	NaN	NaN	0.033226	1	7249	32.14	27.233	1	549730			22387	1205	18891	19427	22387	22387		
YGQHPNIITLK	11	Unmodified	_YGQHPNIITLK_			0	0	0	P51812;Q15349;Q9UK32;Q15418	P51812;Q15418	Q15418	RPS6KA3;RPS6KA2;RPS6KA6;RPS6KA1	Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-2;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	428.575067	1282.70337	-0.7015	-0.00030064	-0.21845	-9.3623E-05	-0.91995	-0.00039427	428.574919036686	6.7377	0.14186	6.7377	6.6934	6.8353	0	750	28	0.820941264895493	0.0183745423602224	0.820941264895493	498.521763401017	0	11.1580567950509						261	17	4	NaN	NaN	NaN	0.046453	1	11850	29.755	27.596	1	76804			22388	1845;1200	18892	19428	22388	22388		
YGQHPPDAVDEPQMLTNEK	19	Unmodified	_YGQHPPDAVDEPQMLTNEK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1084.99949	2167.98443	1.6815	0.0018244	-0.83948	-0.00091084	0.84197	0.00091354	1085.49959219147	7.8818	0.062064	7.8818	7.864	7.9261	0	174	19	1.20774045859593	0.0119282339864504	1.20774045859593	486.809779148557	0	4.80797087755673						41	8	2	NaN	NaN	NaN	0.055653	1	34280	8.4123	7.0435	1	6392.9			22389	849	18893	19429	22389	22389		
YGQHPPDAVDEPQMLTNEK	19	Unmodified	_YGQHPPDAVDEPQMLTNEK_			0	0	0	P26358	P26358	P26358	DNMT1	DNA (cytosine-5)-methyltransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	723.668754	2167.98443	0.83763	0.00060616	0.67376	0.00048758	1.5114	0.0010937	724.003489068864	7.8995	0.12413	7.8995	7.8374	7.9615	0	636	46	0.898312834727904	0.0304630467152948	0.898312834727904	543.129327668399	0	18.4182763972426						452	15	4	NaN	NaN	NaN	5.0331E-08	1	34281	112.68	108.83	1	92402			22390	849	18893	19429	22390	22390		
YGQLIEINSHSLFSK	15	Unmodified	_YGQLIEINSHSLFSK_			0	0	0	Q15645	Q15645	Q15645	TRIP13	Pachytene checkpoint protein 2 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	868.454319	1734.89408	2.9723	0.0025813	-1.3893	-0.0012065	1.583	0.0013747	868.453141381143	12.919	0.17736	12.919	12.884	13.061	0	219	40	1.17788915118882	0.0258995717918544	1.17788915118882	475.531265250089	0	10.456040053672						493	21	5	NaN	NaN	NaN	2.0478E-08	1	25474	144.2	133.95	1	200310			22391	1860	18894	19430	22391	22391		
YGSDIVPFSK	10	Unmodified	_YGSDIVPFSK_			0	0	0	P13010	P13010	P13010	XRCC5	X-ray repair cross-complementing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	556.784764	1111.55498	0.95338	0.00053083	-0.4662	-0.00025957	0.48718	0.00027125	556.784544972894	9.78	0.23054	9.78	9.7179	9.9484	0	684	49	0.86578508874114	0.03255936673099	0.86578508874114	351.079557223582	0	13.2029624950193						619	27	4	NaN	NaN	NaN	3.5768E-10	1	7031	142.56	123.08	1	360530			22392	674	18895	19431	22392	22392		
YGSVAFPNFEQGVACLR	17	Unmodified	_YGSVAFPNFEQGVACLR_			0	0	0	O00116	O00116	O00116	AGPS	Alkyldihydroxyacetonephosphate synthase, peroxisomal	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.961985	1913.90942	1.6176	0.0015496	7.8056	0.0074775	9.4232	0.0090271	957.97119257757	15.801	0.26602	15.801	15.642	15.908	0	213	46	1.18187287897418	0.0298841232722196	1.18187287897418	476.785583682673	0	12.0557120910983						574	31	4	NaN	NaN	NaN	0.0013205	1	29926	77.157	63.38	1	131890			22393	49	18896	19432	22393	22393		
YGTCPHGGYGLGLER	15	Unmodified	_YGTCPHGGYGLGLER_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	546.256068	1635.74637	-0.58265	-0.00031828	1.0684	0.0005836	0.48571	0.00026532	546.25683163997	6.8441	0.12413	6.8441	6.8087	6.9328	0	768	61	0.808687310729125	0.0408408510707656	0.808687310729125	489.951219122007	0	24.7438342442404						413	15	4	NaN	NaN	NaN	0.002695	1	22650	58.313	56.839	1	117040			22394	229	18897	19433	22394	22394		
YGTCPHGGYGLGLER	15	Unmodified	_YGTCPHGGYGLGLER_			0	0	0	O43776	O43776	O43776	NARS	Asparagine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	818.880464	1635.74637	2.071	0.0016959	-0.86346	-0.00070707	1.2075	0.00098882	818.880180447435	6.8441	0.10639	6.8441	6.7998	6.9062	0	387	31	1.06589869032374	0.0200755173877298	1.06589869032374	430.525753247259	0	8.10867610931746						291	13	4	NaN	NaN	NaN	0.0040339	1	22652	44.82	41.532	1	71049			22395	229	18897	19433	22395	22395		
YGTFMAPDLFGSK	13	Unmodified	_YGTFMAPDLFGSK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	717.34212	1432.66969	1.5588	0.0011182	0.12619	9.0524E-05	1.685	0.0012087	717.342267886192	15.393	0.24838	15.393	15.331	15.579	0	465	52	1.01360860968299	0.0342487168428018	1.01360860968299	409.892319808245	0	13.849809347557						873	29	5	NaN	NaN	NaN	0.00027592	1	16466	71.896	64.339	1	491200			22396	1098	18898	19434	22396	22396		
YGTFMAPDLFGSK	13	Oxidation (M)	_YGTFM(Oxidation (M))APDLFGSK_	YGTFM(1)APDLFGSK	YGTFM(100)APDLFGSK	0	1	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	725.339578	1448.6646	1.0373	0.00075239	1.8812	0.0013645	2.9185	0.0021169	725.34088078157	14.09	0.11528	14.09	14.028	14.143	0	459	37	1.01763759082241	0.0241672134976301	1.01763759082241	411.478137453429	0	9.77192675184864						389	14	4	NaN	NaN	NaN	0.0012531	1	16932	103.69	96.996	1	113260			22397	1098	18898	19435	22397	22397	392	
YGVFFDDDYDYLQHLK	16	Unmodified	_YGVFFDDDYDYLQHLK_			0	0	0	Q96GA3	Q96GA3	Q96GA3	LTV1	Protein LTV1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	679.979146	2036.91561	0.2876	0.00019556	-0.83444	-0.0005674	-0.54684	-0.00037184	680.313307695613	16.076	0.0798	16.076	16.041	16.12	0	597	25	0.924688525662974	0.0162165760860672	0.924688525662974	559.305107109526	0	9.80872323279311						193	10	4	NaN	NaN	NaN	0.0025657	1	32277	46.068	44.594	1	48152			22398	2537	18899	19436	22398	22398		
YGVIILDEAHER	12	Unmodified	_YGVIILDEAHER_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	472.249019	1413.72523	-1.9503	-0.00092102	0.26704	0.00012611	-1.6833	-0.00079491	472.249167112991	9.3987	0.27487	9.3987	9.3278	9.6026	0	783	34	0.798467866007927	0.0224890390033184	0.798467866007927	484.396323873009	0	13.6431386714515						444	32	4	NaN	NaN	NaN	0.00031022	1	15880	102.55	99.201	1	274300			22399	181	18900	19437	22399	22399		
YGVIILDEAHER	12	Unmodified	_YGVIILDEAHER_			0	0	0	O43143	O43143	O43143	DHX15	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.869891	1413.72523	1.6186	0.0011458	0.89781	0.00063553	2.5164	0.0017813	707.870406913468	9.3987	0.21277	9.3987	9.3455	9.5583	0	393	37	1.0618830335572	0.0241005916389636	1.0618830335572	429.46899060745	0	9.74726635339022						508	25	4	NaN	NaN	NaN	1.6288E-07	1	15884	140.05	136.16	1	254560			22400	181	18900	19437	22400	22400		
YGVSGYPTLK	10	Unmodified	_YGVSGYPTLK_			0	0	0	P30101	P30101	P30101	PDIA3	Protein disulfide-isomerase A3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.787307	1083.56006	1.2057	0.00065445	0.38227	0.00020749	1.588	0.00086194	542.787617037687	8.077	0.22181	8.077	7.9172	8.139	0	663	67	0.880024865079826	0.0447132521967323	0.880024865079826	356.966737339008	0	18.1371508758857						960	26	3	NaN	NaN	NaN	0.00058548	1	6301	81.163	62.761	1	1370000			22401	904	18901	19438	22401	22401		
YGVVVCEADTGR	12	Unmodified	_YGVVVCEADTGR_			0	0	0	Q9Y5P6	Q9Y5P6	Q9Y5P6	GMPPB	Mannose-1-phosphate guanyltransferase beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	663.311351	1324.60815	1.1848	0.00078589	3.1424	0.0020844	4.3272	0.0028703	663.3158595726	6.3919	0.1862	6.3919	6.3033	6.4895	0	558	28	0.951016745717027	0.0182070471487186	0.951016745717027	384.880700695978	0	7.36847284315706						257	22	4	NaN	NaN	NaN	0.0042784	1	13125	39.039	33.888	1	59686			22402	3440	18902	19439	22402	22402		
YGWLAAPQAYVSEK	14	Unmodified	_YGWLAAPQAYVSEK_			0	0	0	Q04446	Q04446	Q04446	GBE1	1,4-alpha-glucan-branching enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	791.898648	1581.78274	1.6851	0.0013344	1.2994	0.001029	2.9845	0.0023635	791.900532376288	13.221	0.19508	13.221	13.132	13.327	0	375	64	1.07392668217569	0.0421498843295585	1.07392668217569	433.892576799455	0	17.0295814668652						709	23	4	NaN	NaN	NaN	0.0044325	1	21023	61.577	58.699	1	215970			22403	1543	18903	19440	22403	22403		
YGYEIPVDMLCK	12	Unmodified	_YGYEIPVDMLCK_			0	0	0	P60900	P60900	P60900	PSMA6	Proteasome subunit alpha type-6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.349088	1486.68362	1.5516	0.0011549	0.12034	8.9571E-05	1.6719	0.0012445	744.349571423323	14.604	0.23943	14.604	14.48	14.719	0	420	70	1.04379886199097	0.0462725673193705	1.04379886199097	421.95424974983	0	18.7056214930156						902	28	6	NaN	NaN	NaN	2.1051E-05	1	18126	118.91	97.82	1	524690			22404	1314	18904	19441	22404	22404		
YGYTEDPLEVR	11	Unmodified	_YGYTEDPLEVR_			0	0	0	Q14966	Q14966	Q14966	ZNF638	Zinc finger protein 638	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.319699	1340.62485	1.7264	0.0011589	0.081888	5.4973E-05	1.8083	0.0012139	671.319515866088	9.8509	0.14184	9.8509	9.7977	9.9396	0	528	40	0.971237000454584	0.0262627024268471	0.971237000454584	393.015453994001	0	10.6273215626728						346	17	4	NaN	NaN	NaN	0.00023982	1	13609	65.933	56.955	1	77416			22405	1779	18905	19442	22405	22405		
YGYTHLSAGELLR	13	Unmodified	_YGYTHLSAGELLR_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.924536	1478.75178	-1.4119	-0.00069735	-0.6558	-0.00032392	-2.0677	-0.0010213	493.924251337039	9.9573	0.19505	9.9573	9.9041	10.099	0	792	52	0.792332785124922	0.0347606318654973	0.792332785124922	480.469890109883	0	21.0788159799956						723	23	5	NaN	NaN	NaN	1.1831E-05	1	17864	141.29	119.25	1	397270			22406	902	18906	19443	22406	22406		
YGYTHLSAGELLR	13	Unmodified	_YGYTHLSAGELLR_			0	0	0	P30085	P30085	P30085	CMPK1	UMP-CMP kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.383165	1478.75178	1.7269	0.0012786	0.74022	0.00054805	2.4671	0.0018266	740.383406125182	9.9573	0.17731	9.9573	9.9041	10.081	0	417	31	1.04580932352505	0.0201004566486325	1.04580932352505	422.787886351129	0	8.12598376205261						273	21	3	NaN	NaN	NaN	0.00049681	1	17869	81.799	46.846	1	133970			22407	902	18906	19443	22407	22407		
YGYTHLSTGDLLR	13	Unmodified	_YGYTHLSTGDLLR_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	499.256174	1494.74669	-0.65387	-0.00032645	-1.0293	-0.00051389	-1.6832	-0.00084034	499.255610811064	9.8864	0.16847	9.8864	9.8332	10.002	0	762	49	0.812773098473386	0.0326817653854051	0.812773098473386	492.8160471937	0	19.8162297236449						569	20	5	NaN	NaN	NaN	9.7072E-05	1	18379	127.93	121.67	1	295170			22408	485	18907	19444	22408	22408		
YGYTHLSTGDLLR	13	Unmodified	_YGYTHLSTGDLLR_			0	0	0	P00568	P00568	P00568	AK1	Adenylate kinase isoenzyme 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	748.380623	1494.74669	1.8416	0.0013782	-2.5885	-0.0019372	-0.74689	-0.00055896	748.377963922354	9.8864	0.13301	9.8864	9.8332	9.9662	0	405	52	1.05384839605172	0.0341731416799977	1.05384839605172	425.995576374484	0	13.8137584504926						340	16	4	NaN	NaN	NaN	0.00085579	1	18380	58.889	53.023	1	94713			22409	485	18907	19444	22409	22409		
YHAASAEEQATIER	14	Unmodified	_YHAASAEEQATIER_			0	0	0	Q9Y2R9	Q9Y2R9	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.373526	1574.7325	2.9609	0.0023343	-2.5173	-0.0019846	0.44356	0.00034969	788.371518137957	3.714	0.062069	3.714	3.6962	3.7583	0	441	28	1.02971785871157	0.0181141482765854	1.02971785871157	416.047312746013	0	7.31884238910453						124	8	3	NaN	NaN	NaN	0.0053657	1	20811	38.1	32.949	1	23340			22410	3350	18908	19445	22410	22410		
YHAASAEEQATIER	14	Unmodified	_YHAASAEEQATIER_			0	0	0	Q9Y2R9	Q9Y2R9	Q9Y2R9	MRPS7	28S ribosomal protein S7, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	525.918109	1574.7325	0.50014	0.00026303	2.1202	0.0011151	2.6203	0.0013781	526.253347371737	3.7228	0.053197	3.7228	3.6962	3.7494	0	744	28	0.82502364452135	0.0183668788901949	0.82502364452135	500.011154660247	0	11.1313710611523						117	7	3	NaN	NaN	NaN	5.1426E-05	1	20812	120.65	107.48	1	24475			22411	3350	18908	19445	22411	22411		
YHDMPDVIDFLVLR	14	Unmodified	_YHDMPDVIDFLVLR_			0	0	0	Q8WWQ0;Q9NSI6	Q8WWQ0	Q8WWQ0	PHIP;BRWD1	PH-interacting protein;Bromodomain and WD repeat-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	578.295752	1731.86543	-1.1321	-0.0006547	1.5861	0.00091722	0.45395	0.00026252	578.296729260033	18.984	0.035478	18.984	18.967	19.002	0	651	16	0.888155670855968	0.0101613921840311	0.888155670855968	537.847323901898	0	6.15351314261329						50	5	2	NaN	NaN	NaN	0.051653	1	25378	21.15	20.86	1	9320.6			22412	2392	18909	19446	22412	22412		
YHEEFEK	7	Unmodified	_YHEEFEK_			0	0	0	Q14847	Q14847	Q14847	LASP1	LIM and SH3 domain protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	491.219257	980.423961	0.64206	0.00031539	0.27693	0.00013603	0.91898	0.00045142	491.219388155155	2.499	0.2128	2.499	2.4636	2.6764	0	732	25	0.833184998970724	0.0163181723166257	0.833184998970724	338.412931677342	0	6.62791641725101						251	25	3	NaN	NaN	NaN	0.020385	1	3846	56.091	46.012	1	46566			22413	1777	18910	19447	22413	22413		
YHEQLSTQSLIELFESFK	18	Unmodified	_YHEQLSTQSLIELFESFK_			0	0	0	Q00610	Q00610	Q00610	CLTC	Clathrin heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	733.703793	2198.08955	-0.87511	-0.00064207	0.84099	0.00061704	-0.034114	-2.5029E-05	734.039125743515	19.942	0.026601	19.942	19.933	19.96	0	624	28	0.906433495720521	0.0182676885200254	0.906433495720521	547.991417786259	0	11.0438731346849						81	4	3	NaN	NaN	NaN	8.0139E-05	1	34657	87.727	82.112	1	22868			22414	1503	18911	19448	22414	22414		
YHFNMGLLMGEAR	13	Unmodified	_YHFNMGLLMGEAR_			0	0	0	P47897	P47897	P47897	QARS	Glutamine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	769.865771	1537.71699	1.4531	0.0011187	4.4285	0.0034094	5.8816	0.0045281	769.869666426478	13.708	0.12412	13.708	13.646	13.77	0	399	34	1.0578662689527	0.0220998283327687	1.0578662689527	427.510048641668	0	8.93108983885838						291	15	4	NaN	NaN	NaN	0.00024527	1	19654	70.195	61.821	1	76335			22415	1101	18912	19449	22415	22415		
YHIDLDPHFNDILGQHSR	18	Unmodified	_YHIDLDPHFNDILGQHSR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.35561	2176.045	0.84048	0.00061049	-2.5522	-0.0018538	-1.7117	-0.0012433	726.68768823366	12.724	0.088702	12.724	12.68	12.768	0	600	43	0.922661313351899	0.0283829455526903	0.922661313351899	557.83753980917	0	17.1602215141448						303	11	4	NaN	NaN	NaN	0.0063178	1	34393	31.722	26.906	1	56018			22416	772	18913	19450	22416	22416		
YHIDLDPHFNDILGQHSR	18	Unmodified	_YHIDLDPHFNDILGQHSR_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	545.018526	2176.045	0.18552	0.00010111	-1.5577	-0.00084896	-1.3722	-0.00074785	545.268538266517	12.733	0.14189	12.733	12.671	12.813	0	684	34	0.86578508874114	0.0223861150035557	0.86578508874114	697.931801847804	0	18.0460275696377						385	17	5	NaN	NaN	NaN	0.0011809	1	34394	54.309	51.593	1	121650			22417	772	18913	19450	22417	22417		
YHIIHADIYR	10	Unmodified	_YHIIHADIYR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	434.231412	1299.67241	-0.79702	-0.00034609	0.59205	0.00025709	-0.20497	-8.9006E-05	434.231684631417	6.0106	0.18615	6.0106	5.9663	6.1525	0	762	31	0.812773098473386	0.0204260995124381	0.812773098473386	493.493037696308	0	12.4021549379691						325	22	4	NaN	NaN	NaN	0.0045273	1	12343	60.892	38.848	1	153060			22418	1284	18914	19451	22418	22418		
YHIIHADIYR	10	Unmodified	_YHIIHADIYR_			0	0	0	P56192	P56192	P56192	MARS	Methionine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	650.843479	1299.67241	2.3167	0.0015078	-1.3007	-0.00084656	1.016	0.00066127	650.842939590694	6.0017	0.16854	6.0017	5.9396	6.1081	0	489	34	0.997481546940468	0.0221885084340552	0.997481546940468	403.765182667401	0	8.98156681541911						367	20	5	NaN	NaN	NaN	1.7268E-07	1	12344	86.205	67.802	1	101630			22419	1284	18914	19451	22419	22419		
YHLMQFAEVTR	11	Unmodified	_YHLMQFAEVTR_			0	0	0	Q5JVF3	Q5JVF3	Q5JVF3	PCID2	PCI domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	697.847904	1393.68126	1.1808	0.00082404	-2.1849	-0.0015247	-1.004	-0.00070066	698.345367545053	10.188	0.1064	10.188	10.143	10.25	0	462	25	1.01562323939346	0.0161159257109076	1.01562323939346	410.816873585477	0	6.51884868196277						178	13	4	NaN	NaN	NaN	0.033186	1	15262	24.821	19.67	1	29369			22420	1971	18915	19452	22420	22420		
YHNVGLSK	8	Unmodified	_YHNVGLSK_			0	0	0	Q14103	Q14103	Q14103	HNRNPD	Heterogeneous nuclear ribonucleoprotein D0	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	459.245609	916.476666	-0.38791	-0.00017815	1.4395	0.00066107	1.0516	0.00048292	459.246166002785	2.3306	0.20394	2.3306	2.304	2.5079	0	792	25	0.792332785124922	0.016361355368585	0.792332785124922	322.130506838917	0	6.65186623146349						230	24	2	NaN	NaN	NaN	0.01521	1	2638	62.88	33.57	1	53678			22421	1717	18916	19453	22421	22421		
YHPGYFGK	8	Unmodified	_YHPGYFGK_			0	0	0	P46776	P46776	P46776	RPL27A	60S ribosomal protein L27a	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	484.734877	967.455202	1.7385	0.00084273	0.69448	0.00033664	2.433	0.0011794	484.735513898443	3.9268	0.24829	3.9268	3.8647	4.113	0	729	52	0.835224628594324	0.0346688965431766	0.835224628594324	339.304261905912	0	14.0840008184056						745	29	5	NaN	NaN	NaN	0.01334	1	3572	72.355	54.66	1	816130			22422	1085	18917	19454	22422	22422		
YHQCATIQLDFQLPIR	16	Unmodified	_YHQCATIQLDFQLPIR_			0	0	0	P26639;A2RTX5	P26639	P26639	TARS;TARSL2	Threonine--tRNA ligase, cytoplasmic;Probable threonine--tRNA ligase 2, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	668.343765	2002.00947	-0.56802	-0.00037964	-1.5636	-0.001045	-2.1316	-0.0014246	668.677179689239	15.384	0.12427	15.384	15.34	15.464	0	690	37	0.86171403876517	0.0244195217531761	0.86171403876517	521.275953879303	0	14.7720809021567						303	15	3	NaN	NaN	NaN	9.9762E-05	1	31673	72.846	71.575	1	56557			22423	857	18918	19455	22423	22423		
YHSDDYIK	8	Unmodified	_YHSDDYIK_			0	0	0	Q13547	Q13547	Q13547	HDAC1	Histone deacetylase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.737814	1039.46108	1.6349	0.00085137	0.39593	0.00020618	2.0309	0.0010575	520.738027732537	2.9424	0.20393	2.9424	2.9158	3.1198	0	663	28	0.880024865079826	0.0183006625091034	0.880024865079826	357.156802539183	0	7.42729707473347						253	24	2	NaN	NaN	NaN	0.0023537	1	5208	77.072	58.669	1	55233			22424	1682	18919	19456	22424	22424		
YHSDEYIK	8	Unmodified	_YHSDEYIK_			0	0	0	Q92769	Q92769	Q92769	HDAC2	Histone deacetylase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.745639	1053.47673	1.3708	0.00072341	0.81257	0.00042883	2.1833	0.0011522	527.746018563174	2.8183	0.17734	2.8183	2.7917	2.969	0	651	25	0.888155670855968	0.0162571004140306	0.888155670855968	360.393984698066	0	6.59677282947763						205	21	3	NaN	NaN	NaN	0.0010189	1	5551	87.251	62.4	1	37515			22425	2431	18920	19457	22425	22425		
YHTEIVFAR	9	Unmodified	_YHTEIVFAR_			0	0	0	P05023	P05023	P05023	ATP1A1	Sodium/potassium-transporting ATPase subunit alpha-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.298373	1134.58219	1.6175	0.00091925	-0.95484	-0.00054263	0.66271	0.00037661	568.298055621132	6.7555	0.23051	6.7555	6.6845	6.9151	0	594	37	0.926715457081489	0.0243214961029116	0.926715457081489	375.693660232906	0	9.86001886924362						445	27	4	NaN	NaN	NaN	0.00015649	1	7658	90.308	81.545	1	146960			22426	522	18921	19458	22426	22426		
YHTESLQNMSK	11	Unmodified	_YHTESLQNMSK_			0	0	0	O94992	O94992	O94992	HEXIM1	Protein HEXIM1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	669.311351	1336.60815	2.787	0.0018654	-6.3385	-0.0042424	-3.5515	-0.0023771	669.307270161093	3.8381	0.24826	3.8381	3.7494	3.9977	0	555	37	0.953040030838688	0.0242777450705638	0.953040030838688	385.663818332334	0	9.82440145370708						324	29	4	NaN	NaN	NaN	0.00056561	1	13482	51.872	43.109	1	54019			22427	401	18922	19459	22427	22427		
YHTINGHNAEVR	12	Unmodified	_YHTINGHNAEVR_			0	0	0	P22626	P22626	P22626	HNRNPA2B1	Heterogeneous nuclear ribonucleoproteins A2/B1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	470.900613	1409.68001	-0.37819	-0.00017809	1.5279	0.00071948	1.1497	0.00054139	470.901425174711	2.3217	0.088656	2.3217	2.304	2.3926	0	798	22	0.788241307691771	0.0143211685838921	0.788241307691771	478.205577012534	0	8.68828189962341						127	11	3	NaN	NaN	NaN	0.0040058	1	15745	56.202	41.44	1	23814			22428	808	18923	19460	22428	22428		
YHTSQSGDEMTSLSEYVSR	19	Unmodified	_YHTSQSGDEMTSLSEYVSR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1088.97621	2175.93788	2.2396	0.0024389	-0.67228	-0.0007321	1.5674	0.0017068	1089.47734522016	9.9573	0.19505	9.9573	9.913	10.108	0	198	82	1.1918274123006	0.0537471432722989	1.1918274123006	480.384450859035	0	21.6636164260276						1270	23	6	NaN	NaN	NaN	4.4247E-11	1	34387	97.268	91.881	1	527150			22429	579	18924	19461	22429	22429		
YHTSQSGDEMTSLSEYVSR	19	Unmodified	_YHTSQSGDEMTSLSEYVSR_			0	0	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	726.319902	2175.93788	1.6695	0.0012126	1.9082	0.0013859	3.5776	0.0025985	726.65585078602	9.9573	0.532	9.9573	9.8952	10.427	0	594	166	0.926715457081489	0.111682722976527	0.926715457081489	560.288818720778	0	67.5229709938203						3264	61	7	NaN	NaN	NaN	5.6634E-20	1	34388	230.5	208.1	1	6139300			22430	579	18924	19461	22430	22430		
YHTSQSGDEMTSLSEYVSR	19	Oxidation (M)	_YHTSQSGDEM(Oxidation (M))TSLSEYVSR_	YHTSQSGDEM(1)TSLSEYVSR	YHTSQSGDEM(46)TSLSEYVSR	0	1	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1096.97367	2191.93279	2.4791	0.0027195	-1.5785	-0.0017316	0.90059	0.00098793	1097.47367485036	7.2255	0.12413	7.2255	7.19	7.3142	0	243	82	1.16194328902838	0.0537988442940078	1.16194328902838	468.317515758376	0	21.6834516351563						788	15	5	NaN	NaN	NaN	0.00024231	1	34582	46.206	45.263	1	186070			22431	579	18924	19462	22431	22431	152	
YHTSQSGDEMTSLSEYVSR	19	Oxidation (M)	_YHTSQSGDEM(Oxidation (M))TSLSEYVSR_	YHTSQSGDEM(1)TSLSEYVSR	YHTSQSGDEM(250)TSLSEYVSR	0	1	0	P08238	P08238	P08238	HSP90AB1	Heat shock protein HSP 90-beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	731.65154	2191.93279	1.483	0.001085	0.028797	2.1069E-05	1.5118	0.0011061	731.986177931836	7.2255	0.24826	7.2255	7.1723	7.4205	0	600	94	0.922661313351899	0.0629395582184972	0.922661313351899	557.811905110791	0	38.0512701341595						1130	29	6	NaN	NaN	NaN	5.1083E-27	1	34583	249.97	240.06	1	593870			22432	579	18924	19462	22432	22432	152	
YHVLVNLGK	9	Unmodified	_YHVLVNLGK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	521.805834	1041.59712	0.9771	0.00050986	-1.6315	-0.00085132	-0.65439	-0.00034146	521.80515472584	7.2432	0.16847	7.2432	7.1989	7.3674	-8.8818E-16	660	40	0.882057989648486	0.0264306247374108	0.882057989648486	357.972356510477	0	10.7265430757739						316	20	2	NaN	NaN	NaN	0.00050563	1	5266	108.92	41.417	1	151460			22433	350	18925	19463	22433	22433		
YHVPVVVVPEGSASDTHEQAILR	23	Unmodified	_YHVPVVVVPEGSASDTHEQAILR_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	626.578948	2502.28669	1.6819	0.0010538	-1.1575	-0.00072525	0.5244	0.00032858	626.82921219727	10.915	0.19512	10.915	10.835	11.03	0	579	61	0.936845902828289	0.040479730715125	0.936845902828289	754.591922759236	0	32.6048048466524						687	23	5	NaN	NaN	NaN	3.8093E-05	1	36842	50.641	50.386	1	217340			22434	519	18926	19464	22434	22434		
YHVPVVVVPEGSASDTHEQAILR	23	Unmodified	_YHVPVVVVPEGSASDTHEQAILR_			0	0	0	P04844	P04844	P04844	RPN2	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	835.102839	2502.28669	2.7883	0.0023285	-0.099192	-8.2836E-05	2.6891	0.0022457	835.436778976774	10.915	0.070931	10.915	10.879	10.95	0	360	40	1.08395544855938	0.0260676102408008	1.08395544855938	654.813536888513	0	15.7473483644516						261	9	4	NaN	NaN	NaN	0.037884	1	36843	22.039	21.341	1	50589			22435	519	18926	19464	22435	22435		
YHYVGTFPDGQK	12	Unmodified	_YHYVGTFPDGQK_			0	0	0	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.335684	1410.65681	2.0682	0.0014608	-0.89026	-0.00062882	1.1779	0.00083202	706.334917400483	5.9396	0.24835	5.9396	5.8775	6.1259	0	498	46	0.991429299781895	0.030261243599951	0.991429299781895	400.983071479918	0	12.2391444434613						479	29	3	NaN	NaN	NaN	0.0042784	1	15770	61.48	50.12	1	127290			22436	420	18927	19465	22436	22436		
YHYVGTFPDGQK	12	Unmodified	_YHYVGTFPDGQK_			0	0	0	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	706.335684	1410.65681	2.922	0.0020639	2.2329	0.0015772	5.1549	0.0036411	706.337295026271	2.9513	0.22169	2.9513	2.8892	3.1109	0	528	106	0.971237000454584	0.0707073650699812	0.971237000454584	392.816294452564	0	28.5975566461066						1131	26	4	NaN	NaN	NaN	0.049078	1	15773	13.995	0	1	366950			22437	420	18927	19465	22437	22437		
YHYVGTFPDGQK	12	Unmodified	_YHYVGTFPDGQK_			0	0	0	O95302	O95302	O95302	FKBP9	Peptidyl-prolyl cis-trans isomerase FKBP9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	471.226215	1410.65681	0.1597	7.5257E-05	4.9998	0.0023561	5.1595	0.0024313	471.228602971513	2.6764	0.15965	2.6764	2.6409	2.8006	0	807	28	0.782101955086014	0.0184231892400387	0.782101955086014	474.477787475996	0	11.1767960839629						285	19	4	NaN	NaN	NaN	0.033458	1	15774	23.053	9.0583	1	67413			22438	420	18927	19465	22438	22438		
YIAFDFHK	8	Unmodified	_YIAFDFHK_			0	0	0	Q9NTJ5	Q9NTJ5	Q9NTJ5	SACM1L	Phosphatidylinositide phosphatase SAC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	347.511515	1039.51272	-2.1367	-0.00074252	-0.10639	-3.6971E-05	-2.2431	-0.00077949	347.511504616676	8.9908	0.044347	8.9908	8.973	9.0174	0	891	13	0.724677416575734	0.00821952916569113	0.724677416575734	441.158036451659	0	5.00375927875285						41	6	2	NaN	NaN	NaN	0.033169	1	5214	30.562	27.421	1	7875.1			22439	3043	18928	19466	22439	22439		
YIAIASTTVETTDPEK	16	Unmodified	_YIAIASTTVETTDPEK_			0	0	0	P31150	P31150	P31150	GDI1	Rab GDP dissociation inhibitor alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.940907	1737.86726	1.7941	0.0015608	0.28064	0.00024414	2.0748	0.0018049	869.940634898525	9.4696	0.097559	9.4696	9.4253	9.5228	0	315	40	1.11400032671325	0.0260102225300953	1.11400032671325	449.73229704678	0	10.5005688460348						217	12	2	NaN	NaN	NaN	1.8674E-06	1	25545	95.138	89.11	1	62891			22440	920	18929	19467	22440	22440		
YIAIVSTTVETK	12	Unmodified	_YIAIVSTTVETK_			0	0	0	P50395	P50395	P50395	GDI2	Rab GDP dissociation inhibitor beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	662.871568	1323.72858	1.8237	0.0012089	0.56248	0.00037285	2.3862	0.0015817	662.871942597378	9.7268	0.29262	9.7268	9.6647	9.9573	0	492	64	0.995464410099171	0.0423423350766804	0.995464410099171	402.871642283036	0	17.1362490686547						608	34	2	NaN	NaN	NaN	0.00048471	1	13110	70.389	54.807	1	178370			22441	1161	18930	19468	22441	22441		
YIAPTVLTDVDPK	13	Unmodified	_YIAPTVLTDVDPK_			0	0	0	P51648	P51648	P51648	ALDH3A2	Fatty aldehyde dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	716.390125	1430.7657	1.7322	0.0012409	0.48297	0.000346	2.2151	0.0015869	716.390302279131	12.192	0.1951	12.192	12.121	12.316	0	423	91	1.04178812298108	0.060293107368949	1.04178812298108	421.293168639005	0	24.3821883646274						1032	23	4	NaN	NaN	NaN	2.8664E-05	1	16423	106.35	94.998	1	315970			22442	1194	18931	19469	22442	22442		
YICDNQDTISSK	12	Unmodified	_YICDNQDTISSK_			0	0	0	CON__P02769	CON__P02769	CON__P02769			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	722.324656	1442.63476	2.8029	0.0020246	-0.99755	-0.00072055	1.8054	0.0013041	722.324190694515	4.4854	0.097533	4.4854	4.4499	4.5475	0	474	40	1.00756305028564	0.0262010489671465	1.00756305028564	407.420651128879	0	10.5947200301045						215	12	3	NaN	NaN	NaN	0.00035937	1	16741	66.664	35.746	1	48188		+	22443	26	18932	19470	22443	22443		
YIDQEELNK	9	Unmodified	_YIDQEELNK_			0	0	0	P08238;Q58FF8;P07900;Q14568	P08238;Q58FF8;P07900	P08238	HSP90AB1;HSP90AB2P;HSP90AA1;HSP90AA2P	Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha;Heat shock protein HSP 90-alpha A2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.282586	1150.55062	2.0117	0.0011593	1.1873	0.00068421	3.199	0.0018435	576.282751391489	4.7958	0.45219	4.7958	4.6273	5.0795	0	639	88	0.896281965493857	0.0588870993189565	0.896281965493857	363.295257069941	0	23.8690553964182						1892	52	5	NaN	NaN	NaN	6.7003E-06	1	8075	146.03	68.959	1	6696800			22444	579;567;1959	18933	19471	22444	22444		
YIDSADLEPITSQEEPVR	18	Unmodified	_YIDSADLEPITSQEEPVR_			0	0	0	P17812	P17812	P17812	CTPS1	CTP synthase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1031.50239	2060.99023	1.5979	0.0016482	-0.39253	-0.00040489	1.2054	0.0012433	1032.00341632202	11.882	0.13302	11.882	11.837	11.97	0	213	112	1.18187287897418	0.0736333241864111	1.18187287897418	476.540624167113	0	29.6895468975883						1177	16	5	NaN	NaN	NaN	1.2756E-19	1	32724	155.57	148	1	316680			22445	741	18934	19472	22445	22445		
YIEIFPSR	8	Unmodified	_YIEIFPSR_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	512.776742	1023.53893	-0.14253	-7.3084E-05	-7.3358	-0.0037617	-7.4784	-0.0038347	512.776256623105	11.412	0.24835	11.412	11.287	11.536	0	690	52	0.86171403876517	0.0346303797525405	0.86171403876517	349.796519066642	0	14.0575478017664						513	29	3	NaN	NaN	NaN	0.019512	1	4834	51.43	35.932	1	109370			22446	1600	18935	19473	22446	22446		
YIEIYVQK	8	Unmodified	_YIEIYVQK_			0	0	0	Q00610;P53675	Q00610	Q00610	CLTC;CLTCL1	Clathrin heavy chain 1;Clathrin heavy chain 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.292225	1054.5699	0.65109	0.00034397	-0.65515	-0.00034611	-0.0040607	-2.1452E-06	528.292303968433	8.6091	0.35491	8.6091	8.4938	8.8487	0	645	40	0.892219381832517	0.0264086306406944	0.892219381832517	362.038113553767	0	10.7158968000203						503	41	4	NaN	NaN	NaN	0.0036637	1	5585	70.67	63.023	1	131290			22447	1503	18936	19474	22447	22447		
YIELLTR	7	Unmodified	_YIELLTR_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.26601	906.517468	-0.70831	-0.00032176	-1.9446	-0.00088336	-2.6529	-0.0012051	454.264813164779	9.913	0.11527	9.913	9.8598	9.975	0	735	25	0.831145085810763	0.0163204408443606	0.831145085810763	337.964848046014	0	6.63630863512572						140	14	2	NaN	NaN	NaN	0.026367	1	2449	56.091	13.862	1	34556			22448	718	18937	19475	22448	22448		
YIEPVDRDVYFEDVR	15	Unmodified	_YIEPVDRDVYFEDVR_			0	0	1	O00418	O00418	O00418	EEF2K	Eukaryotic elongation factor 2 kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.979257	1913.91594	0.30308	0.00019366	0.13544	8.6546E-05	0.43852	0.00028021	638.979316673712	11.137	0.070967	11.137	11.101	11.172	0	651	28	0.888155670855968	0.0182879696480781	0.888155670855968	537.441340614888	0	11.0664281581571						163	9	4	NaN	NaN	NaN	0.00066129	1	29924	28.228	23.7	1	32828			22449	76	18938	19476	22449	22449		
YIESPVLFLR	10	Unmodified	_YIESPVLFLR_			0	0	0	Q14166	Q14166	Q14166	TTLL12	Tubulin--tyrosine ligase-like protein 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.852981	1235.69141	1.1963	0.00074036	-3.5985	-0.0022269	-2.4022	-0.0014866	618.850841900541	15.562	0.19507	15.562	15.482	15.677	0	576	46	0.938871150116794	0.0303787174867894	0.938871150116794	380.247489974302	0	12.3035318228206						473	23	3	NaN	NaN	NaN	0.00099869	1	10501	67.464	41.007	1	154750			22450	1733	18939	19477	22450	22450		
YIETSELCGGAR	12	Unmodified	_YIETSELCGGAR_			0	0	0	O00429	O00429	O00429	DNM1L	Dynamin-1-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	678.316634	1354.61871	1.7365	0.0011779	1.1274	0.00076476	2.8639	0.0019426	678.31668110388	6.5072	0.14189	6.5072	6.454	6.5959	0	525	43	0.973257487423603	0.0282809550509913	0.973257487423603	393.791532730449	0	11.4428101304333						508	17	5	NaN	NaN	NaN	4.7206E-05	1	14032	76.572	41.791	1	155690			22451	79	18940	19478	22451	22451		
YIFDLFYK	8	Unmodified	_YIFDLFYK_			0	0	0	P41223	P41223	P41223	BUD31	Protein BUD31 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	554.789318	1107.56408	-0.34213	-0.00018981	-0.89097	-0.0004943	-1.2331	-0.00068411	554.788809216612	17.557	0.15961	17.557	17.513	17.672	0	636	34	0.898312834727904	0.0223395647977513	0.898312834727904	364.285774384655	0	9.05918890074639						350	19	4	NaN	NaN	NaN	0.013463	1	6922	65.313	43.385	1	114800			22452	1031	18941	19479	22452	22452		
YIFTMLSSLAR	11	Unmodified	_YIFTMLSSLAR_			0	0	0	P11388	P11388	P11388	TOP2A	DNA topoisomerase 2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.349748	1300.68494	0.3187	0.00020759	-0.11499	-7.4896E-05	0.20372	0.00013269	651.349650466694	17.557	0.14188	17.557	17.468	17.61	0	507	43	0.985374541851584	0.0282535899920621	0.985374541851584	398.861182605696	0	11.4365247309055						229	17	3	NaN	NaN	NaN	0.00036518	1	12372	95.311	76.055	1	47605			22453	652	18942	19480	22453	22453		
YIGEVGDIVVGR	12	Unmodified	_YIGEVGDIVVGR_			0	0	0	Q13868	Q13868	Q13868	EXOSC2	Exosome complex component RRP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	638.848427	1275.6823	0.61132	0.00039054	-1.9043	-0.0012166	-1.293	-0.00082604	638.846907603694	11.758	0.12414	11.758	11.722	11.846	0	534	31	0.967195187796614	0.0202090656110732	0.967195187796614	391.583158170727	0	8.18193663027978						175	15	2	NaN	NaN	NaN	0.00034265	1	11655	48.785	42.095	1	57669			22454	1707	18943	19481	22454	22454		
YIHLENLLAR	10	Unmodified	_YIHLENLLAR_			0	0	0	Q2TAY7	Q2TAY7	Q2TAY7	SMU1	WD40 repeat-containing protein SMU1;WD40 repeat-containing protein SMU1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	414.571545	1240.69281	-2.7884	-0.001156	-0.13999	-5.8035E-05	-2.9284	-0.001214	414.571574481026	12.165	0.12417	12.165	12.112	12.236	0	792	25	0.792332785124922	0.0163636329074536	0.792332785124922	481.322330315821	0	9.94049731541327						234	15	3	NaN	NaN	NaN	0.0031309	1	10650	77.072	57.816	1	73684			22455	1926	18944	19482	22455	22455		
YIHPDDELVLEDELQR	16	Unmodified	_YIHPDDELVLEDELQR_			0	0	0	P49005	P49005	P49005	POLD2	DNA polymerase delta subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.993455	1982.95854	-0.33945	-0.00022471	0.28075	0.00018585	-0.058702	-3.886E-05	662.328185153693	12.423	0.12412	12.423	12.387	12.511	0	666	31	0.877991458330206	0.0203354810451108	0.877991458330206	531.157733226559	0	12.302338380985						262	15	4	NaN	NaN	NaN	0.0004876	1	31332	73.655	69.919	1	70866			22456	1120	18945	19483	22456	22456		
YIHSADIIHR	10	Unmodified	_YIHSADIIHR_			0	0	0	Q16539	Q16539	Q16539	MAPK14	Mitogen-activated protein kinase 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	408.887645	1223.64111	-0.46509	-0.00019017	-1.2456	-0.00050932	-1.7107	-0.00069949	408.886977202986	4.4411	0.11525	4.4411	4.4145	4.5297	0	864	28	0.743159753061487	0.0184720295659375	0.743159753061487	451.520063263426	0	11.2230135228083						197	14	3	NaN	NaN	NaN	0.0038195	1	10121	40.502	29.8	1	56467			22457	1886	18946	19484	22457	22457		
YIIEELNVR	9	Unmodified	_YIIEELNVR_			0	0	0	P41252	P41252	P41252	IARS	Isoleucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	574.819138	1147.62372	0.35215	0.00020242	-0.28719	-0.00016508	0.064963	3.7342E-05	574.819582225533	11.722	0.14185	11.722	11.669	11.811	0	591	49	0.928742107665821	0.0324286658287691	0.928742107665821	376.46389538289	0	13.1448997081127						309	17	4	NaN	NaN	NaN	7.1997E-05	1	8009	113.14	0	1	210600			22458	1036	18947	19485	22458	22458		
YIIIGDTGVGK	11	Unmodified	_YIIIGDTGVGK_			0	0	0	P61019;Q8WUD1	P61019	P61019	RAB2A;RAB2B	Ras-related protein Rab-2A;Ras-related protein Rab-2B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	568.321514	1134.62847	1.4308	0.00081317	-0.23719	-0.0001348	1.1936	0.00067837	568.321455031442	10.108	0.11527	10.108	10.064	10.179	0	612	34	0.914549654013882	0.0223117043347298	0.914549654013882	370.761416711558	0	9.04523780867157						325	14	4	NaN	NaN	NaN	0.00012588	1	7670	78.816	57.541	1	186260			22459	1322	18948	19486	22459	22459		
YILAATLDNTLK	12	Unmodified	_YILAATLDNTLK_			0	0	0	P61964	P61964	P61964	WDR5	WD repeat-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	668.37956	1334.74457	1.6979	0.0011348	1.0338	0.00069095	2.7317	0.0018258	668.380290316959	13.593	0.15074	13.593	13.549	13.7	0	426	49	1.03977710643793	0.032187379819224	1.03977710643793	420.769427731204	0	13.0253544753442						357	18	4	NaN	NaN	NaN	3.535E-05	1	13443	92.732	79.084	1	105460			22460	1357	18949	19487	22460	22460		
YILDGSGYFDVR	12	Unmodified	_YILDGSGYFDVR_			0	0	0	Q9BV57	Q9BV57	Q9BV57	ADI1	1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.843342	1403.67213	1.5007	0.0010548	1.1111	0.00078094	2.6118	0.0018357	702.843833684795	14.267	0.23055	14.267	14.214	14.444	0	450	40	1.02367897599655	0.0261684967549374	1.02367897599655	414.046428980472	0	10.5843461546341						534	27	4	NaN	NaN	NaN	0.00039743	1	15571	70.389	67.511	1	140320			22461	2757	18950	19488	22461	22461		
YILPDEPAIIVHPNWAAK	18	Unmodified	_YILPDEPAIIVHPNWAAK_			0	0	0	Q8IX12	Q8IX12	Q8IX12	CCAR1	Cell division cycle and apoptosis regulator protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	683.038559	2046.09385	0.34378	0.00023482	2.1904	0.0014961	2.5342	0.001731	683.374089955481	14.87	0.15075	14.87	14.834	14.985	0	465	46	1.01360860968299	0.0302278047766038	1.01360860968299	613.070504564959	0	18.2829697274171						332	18	5	NaN	NaN	NaN	0.010132	1	32469	37.504	33.197	1	83069			22462	2210	18951	19489	22462	22462		
YIMCGSDEMNIR	12	Unmodified	_YIMCGSDEMNIR_			0	0	0	Q9NV06	Q9NV06	Q9NV06	DCAF13	DDB1- and CUL4-associated factor 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	744.817629	1487.62071	1.4627	0.0010895	2.482	0.0018486	3.9447	0.0029381	744.820460274193	9.1504	0.053205	9.1504	9.1149	9.1681	0	417	22	1.04580932352505	0.0140732315426386	1.04580932352505	422.76451081129	0	5.68905125898419						91	7	3	NaN	NaN	NaN	0.042236	1	18157	34.953	26.951	1	18316			22463	3059	18952	19490	22463	22463		
YIMVPSGNMGVFDPTEIHNR	20	Unmodified	_YIMVPSGNMGVFDPTEIHNR_			0	0	0	Q9P003	Q9P003	Q9P003	CNIH4	Protein cornichon homolog 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	759.697879	2276.07181	1.1797	0.00089618	-1.7463	-0.0013266	-0.5666	-0.00043045	760.031074816901	14.427	0.11529	14.427	14.373	14.489	0	570	97	0.942920803299286	0.0647586504405722	0.942920803299286	569.927539344988	0	39.1419281107777						1071	14	6	NaN	NaN	NaN	2.9973E-08	1	35429	85.742	83.894	1	386250			22464	3139	18953	19491	22464	22464		
YINENLIVNTDELGR	15	Unmodified	_YINENLIVNTDELGR_			0	0	0	P17987	P17987	P17987	TCP1	T-complex protein 1 subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	881.95214	1761.88973	2.5409	0.002241	-1.5094	-0.0013312	1.0315	0.00090972	881.95138953931	13.017	0.24829	13.017	12.928	13.176	0	321	70	1.10999792833052	0.0460117710123258	1.10999792833052	448.06814343411	0	18.5733759382921						1026	29	5	NaN	NaN	NaN	4.5935E-12	1	26199	144.2	127.44	1	517530			22465	747	18954	19492	22465	22465		
YINVGDLAR	9	Unmodified	_YINVGDLAR_			0	0	0	Q9Y3D8	Q9Y3D8	Q9Y3D8	AK6	Adenylate kinase isoenzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.777274	1019.53999	-0.47968	-0.00024501	0.2814	0.00014373	-0.19828	-0.00010128	510.777119274088	9.4874	0.18618	9.4874	9.3721	9.5583	0	693	37	0.85967808974117	0.024426303976944	0.85967808974117	348.988189457198	0	9.91591120184472						302	22	3	NaN	NaN	NaN	0.026055	1	4731	43.734	23.386	1	87203			22466	3390	18955	19493	22466	22466		
YIQDFQR	7	Unmodified	_YIQDFQR_			0	0	0	P17480	P17480	P17480	UBTF	Nucleolar transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	485.243067	968.47158	0.31176	0.00015128	1.0371	0.00050323	1.3488	0.00065451	485.243491256383	5.1859	0.15963	5.1859	5.1415	5.3012	0	714	31	0.845418525735192	0.0203807147323261	0.845418525735192	343.440410106861	0	8.27940341129147						242	19	3	NaN	NaN	NaN	0.014501	1	3592	61.494	36.675	1	49656			22467	737	18956	19494	22467	22467		
YIQEAEMLR	9	Unmodified	_YIQEAEMLR_			0	0	0	Q05048	Q05048	Q05048	CSTF1	Cleavage stimulation factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.789524	1151.56449	0.86171	0.00049702	-4.9011	-0.0028269	-4.0393	-0.0023299	576.787345948035	8.0059	0.17755	8.0059	7.8995	8.077	0	621	49	0.908462957275599	0.0324601421719642	0.908462957275599	368.228837166108	0	13.1571246912193						412	21	3	NaN	NaN	NaN	0.00050836	1	8106	102.46	80.078	1	110780			22468	1548	18957	19495	22468	22468		
YIQELWR	7	Unmodified	_YIQELWR_			0	0	0	P61313	P61313	P61313	RPL15	60S ribosomal protein L15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.269084	1006.52362	-0.54039	-0.0002725	-0.2111	-0.00010645	-0.7515	-0.00037896	504.26891542296	10.197	0.24828	10.197	10.135	10.383	0	750	103	0.820941264895493	0.0693426845446813	0.820941264895493	333.320288214624	0	28.1546617113361						1291	29	5	NaN	NaN	NaN	6.1553E-05	1	4430	109.11	71.499	1	1153300			22469	1341	18958	19496	22469	22469		
YIQPWESEFIDSQR	14	Unmodified	_YIQPWESEFIDSQR_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.425758	1796.83696	1.8927	0.0017023	0.72756	0.00065439	2.6203	0.0023567	899.4263623353	14.152	0.19508	14.152	14.107	14.302	-1.7764E-15	204	58	1.18784641916898	0.0378324369326786	1.18784641916898	479.420084383009	0	15.2693393809014						837	23	5	NaN	NaN	NaN	4.4265E-06	1	27133	91.939	77.577	1	418970			22470	2064	18959	19497	22470	22470		
YISENCETSTMNIDR	15	Unmodified	_YISENCETSTMNIDR_			0	0	0	Q96KQ7	Q96KQ7	Q96KQ7	EHMT2	Histone-lysine N-methyltransferase EHMT2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	916.893108	1831.77166	2.7527	0.0025239	-1.4055	-0.0012887	1.3472	0.0012352	916.891996149495	7.2077	0.097538	7.2077	7.1545	7.2521	0	333	25	1.10198982404297	0.0160228284041832	1.10198982404297	444.703020377068	0	6.46594009387695						161	12	3	NaN	NaN	NaN	0.00025078	1	28014	46.358	45.619	1	34079			22471	2578	18960	19498	22471	22471		
YISIGSEAEK	10	Unmodified	_YISIGSEAEK_			0	0	0	Q9UIQ6	Q9UIQ6	Q9UIQ6	LNPEP	Leucyl-cystinyl aminopeptidase;Leucyl-cystinyl aminopeptidase, pregnancy serum form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.779679	1095.5448	0.31084	0.00017059	2.0184	0.0011077	2.3293	0.0012783	548.781390496622	5.8066	0.079769	5.8066	5.78	5.8598	0	666	31	0.877991458330206	0.0203354810451108	0.877991458330206	356.092996547567	0	8.24760003401582						112	10	2	NaN	NaN	NaN	0.054434	1	6595	26.947	16.245	1	30328			22472	3241	18961	19499	22472	22472		
YISPDQLADLYK	12	Unmodified	_YISPDQLADLYK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.36665	1424.71875	2.5081	0.0017892	1.9591	0.0013976	4.4672	0.0031868	713.368219599333	13.948	0.72709	13.948	13.779	14.506	0	426	109	1.03977710643793	0.0724817161972474	1.03977710643793	420.497006486273	0	29.3123829109326						3952	83	6	NaN	NaN	NaN	3.6942E-07	1	16226	108.4	70.678	1	8762500			22473	544	18962	19500	22473	22473		
YISPDQLADLYK	12	Unmodified	_YISPDQLADLYK_			0	0	0	P06733	P06733	P06733	ENO1	Alpha-enolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.36665	1424.71875	1.2459	0.00088879	3.7703	0.0026896	5.0162	0.0035784	713.369745772447	12.192	0.15965	12.192	12.103	12.263	0	441	31	1.02971785871157	0.0201310011285361	1.02971785871157	416.428931625677	0	8.14119248451311						271	19	2	NaN	NaN	NaN	0.012173	1	16227	47.334	29.864	1	84788			22474	544	18962	19500	22474	22474		
YITDWQNVFR	10	Unmodified	_YITDWQNVFR_			0	0	0	O75340	O75340	O75340	PDCD6	Programmed cell death protein 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	671.332944	1340.65134	1.0484	0.00070385	-1.1664	-0.00078305	-0.11798	-7.9203E-05	671.331850141068	15.109	0.23939	15.109	15.03	15.269	0	528	67	0.971237000454584	0.0444476643821431	0.971237000454584	393.015379771085	0	17.9859454375293						851	28	4	NaN	NaN	NaN	3.9134E-10	1	13612	146.03	116.72	1	362340			22475	319	18963	19501	22475	22475		
YITGTDILDMK	11	Unmodified	_YITGTDILDMK_			0	0	0	Q9Y3A6	Q9Y3A6	Q9Y3A6	TMED5	Transmembrane emp24 domain-containing protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.323396	1268.63224	0.90041	0.00057205	0.0079893	5.0758E-06	0.9084	0.00057713	635.323892540312	13.15	0.18624	13.15	13.096	13.283	0	534	46	0.967195187796614	0.0303240911263755	0.967195187796614	391.606456159949	0	12.277883525583						388	22	4	NaN	NaN	NaN	0.0047797	1	11468	76.572	35.547	1	127650			22476	3377	18964	19502	22476	22476		
YIVPMLTVDGK	11	Unmodified	_YIVPMLTVDGK_			0	0	0	P14550	P14550	P14550	AKR1A1	Alcohol dehydrogenase [NADP(+)]	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	618.338849	1234.66315	0.9126	0.0005643	-1.5288	-0.00094534	-0.61623	-0.00038104	618.338311167974	13.974	0.15074	13.974	13.912	14.063	0	561	55	0.948993180460448	0.0364317543257808	0.948993180460448	384.350490310813	0	14.755177304017						503	18	4	NaN	NaN	NaN	0.028553	1	10473	33.426	16.031	1	175700			22477	698	18965	19503	22477	22477		
YIYDQCPAVAGYGPIEQLPDYNR	23	Unmodified	_YIYDQCPAVAGYGPIEQLPDYNR_			0	0	0	P31930	P31930	P31930	UQCRC1	Cytochrome b-c1 complex subunit 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	901.423361	2701.24825	0.70296	0.00063366	0.61803	0.00055711	1.321	0.0011908	901.758103461291	14.914	0.11526	14.914	14.861	14.976	-1.7764E-15	519	64	0.97729762293174	0.0423950504136956	0.97729762293174	590.141723677089	0	25.600275227788						698	14	5	NaN	NaN	NaN	6.5972E-11	1	37605	135.89	134.34	1	154790			22478	927	18966	19504	22478	22478		
YIYDSAFHPDTGEK	14	Unmodified	_YIYDSAFHPDTGEK_			0	0	0	Q9H9B4	Q9H9B4	Q9H9B4	SFXN1	Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	548.250977	1641.7311	0.38988	0.00021375	0.18555	0.00010173	0.57543	0.00031548	548.250347986999	8.1213	0.19518	8.1213	8.0502	8.2454	0	663	40	0.880024865079826	0.0264342930913768	0.880024865079826	533.155483881236	0	16.0149887616107						421	23	4	NaN	NaN	NaN	0.025598	1	22792	40.861	37.982	1	96238			22479	2933	18967	19505	22479	22479		
YIYDSAFHPDTGEK	14	Unmodified	_YIYDSAFHPDTGEK_			0	0	0	Q9H9B4	Q9H9B4	Q9H9B4	SFXN1	Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.872827	1641.7311	2.4235	0.0019918	0.35412	0.00029104	2.7777	0.0022829	821.872740401321	8.139	0.10642	8.139	8.0858	8.1922	0	324	28	1.1079963157843	0.01801947676188	1.1079963157843	447.515644632811	0	7.27800051693367						210	13	3	NaN	NaN	NaN	3.5249E-06	1	22795	102.03	90.071	1	46825			22480	2933	18967	19505	22480	22480		
YIYDSAFHPDTGEK	14	Unmodified	_YIYDSAFHPDTGEK_			0	0	0	Q9H9B4	Q9H9B4	Q9H9B4	SFXN1	Sideroflexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	821.872827	1641.7311	2.2205	0.001825	2.177	0.0017892	4.3975	0.0036142	821.873690503722	8.1302	0.25729	8.1302	8.0237	8.281	0	369	37	1.07793901817685	0.024074020010092	1.07793901817685	435.375605816414	0	9.72340816093424						442	30	4	NaN	NaN	NaN	4.9022E-06	1	22796	86.838	83.96	1	89724			22481	2933	18967	19505	22481	22481		
YKAQMEQLNGVLLHLESELAQTR	23	Unmodified	_YKAQMEQLNGVLLHLESELAQTR_			0	0	1	CON__P05784	CON__P05784	CON__P05784			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	891.133921	2670.37994	0.97268	0.00086679	-5.1496	-0.004589	-4.1769	-0.0037222	891.463761650213	19.924	0.044334	19.924	19.915	19.96	0	453	46	1.02166545906632	0.0302111061455164	1.02166545906632	616.969801187317	0	18.2440739156262						214	6	7	NaN	NaN	NaN	0.051599	1	37517	18.926	10.514	1	80164		+	22482	27	18968	19506	22482	22482		
YKDDDDDQLFYTR	13	Unmodified	_YKDDDDDQLFYTR_			0	0	1	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	565.249525	1692.72674	-0.17097	-9.6643E-05	-0.15883	-8.978E-05	-0.32981	-0.00018642	565.249408047915	7.7664	0.097586	7.7664	7.7309	7.8285	0	762	40	0.812773098473386	0.0265594729545963	0.812773098473386	492.287572253774	0	16.0867756151333						234	12	3	NaN	NaN	NaN	0.00035673	1	24270	85.821	83.342	1	53417			22483	268	18969	19507	22483	22483		
YKDDDDDQLFYTR	13	Unmodified	_YKDDDDDQLFYTR_			0	0	1	O60568	O60568	O60568	PLOD3	Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	847.370649	1692.72674	2.6999	0.0022878	-0.37423	-0.00031711	2.3257	0.0019707	847.370385594917	7.7664	0.19513	7.7664	7.7221	7.9172	0	372	28	1.07593298845566	0.0180567582356488	1.07593298845566	434.455814506837	0	7.29121951905381						397	23	4	NaN	NaN	NaN	0.0091943	1	24271	78.864	74.881	1	85165			22484	268	18969	19507	22484	22484		
YKPESEELTAER	12	Unmodified	_YKPESEELTAER_			0	0	1	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	484.571939	1450.69399	0.019914	9.6497E-06	1.3141	0.00063678	1.334	0.00064643	484.572519137222	4.1307	0.21272	4.1307	4.0953	4.3081	0	777	61	0.802556497112065	0.0408863306376825	0.802556497112065	486.756665224301	0	24.7978728302259						719	25	5	NaN	NaN	NaN	0.0055031	1	16998	96.957	79.487	1	336410			22485	554	18970	19508	22485	22485		
YKPESEELTAER	12	Unmodified	_YKPESEELTAER_			0	0	1	P07237	P07237	P07237	P4HB	Protein disulfide-isomerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.354271	1450.69399	2.9016	0.0021076	-1.4936	-0.0010849	1.408	0.0010227	726.353175471921	4.1307	0.23047	4.1307	4.0953	4.3258	0	474	118	1.00756305028564	0.078722879865007	1.00756305028564	407.399154821098	0	31.8308960545888						1267	27	5	NaN	NaN	NaN	2.1782E-15	1	16999	192.14	160	1	618940			22486	554	18970	19508	22486	22486		
YLADPSNLFVVSSDFCHWGQR	21	Unmodified	_YLADPSNLFVVSSDFCHWGQR_			0	0	0	Q9Y316	Q9Y316	Q9Y316	MEMO1	Protein MEMO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	833.390103	2497.14848	0.52643	0.00043872	-0.060692	-5.058E-05	0.46574	0.00038814	833.723953117743	18.124	0.079797	18.124	18.089	18.169	0	513	37	0.981336640919867	0.0242341119852805	0.981336640919867	592.828625089765	0	14.6399050941769						259	10	4	NaN	NaN	NaN	0.00078901	1	36812	26.682	25.739	1	45422			22487	3365	18971	19509	22487	22487		
YLAEFATGNDR	11	Unmodified	_YLAEFATGNDR_			0	0	0	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.798934	1255.58332	1.781	0.0011199	-0.26616	-0.00016736	1.5148	0.00095253	628.799418632586	7.8818	0.35485	7.8818	7.7753	8.1302	0	594	58	0.926715457081489	0.0385010429899318	0.926715457081489	375.258658042856	0	15.5903838823978						776	41	4	NaN	NaN	NaN	0.00051043	1	11078	104.39	79.141	1	747600			22488	1375	18972	19510	22488	22488		
YLAEFATGNDRK	12	Unmodified	_YLAEFATGNDRK_			0	0	1	P62258	P62258	P62258	YWHAE	14-3-3 protein epsilon	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.846416	1383.67828	2.1112	0.0014628	-2.6119	-0.0018097	-0.50073	-0.00034693	692.843147607549	5.7711	0.21278	5.7711	5.7002	5.913	0	483	76	1.00151498427745	0.0504493774018596	1.00151498427745	405.138893689823	0	20.4080870169662						687	25	4	NaN	NaN	NaN	1.4785E-06	1	14943	136.84	117.58	1	277970			22489	1375	18973	19511	22489	22489		
YLAEVAAGDDK	11	Unmodified	_YLAEVAAGDDK_			0	0	0	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	576.282586	1150.55062	0.814	0.0004691	-1.1385	-0.00065611	-0.32451	-0.00018701	576.282991728635	5.4608	0.17731	5.4608	5.3721	5.5494	0	633	13	0.900343422309015	0.00812404047649751	0.900343422309015	364.941521393317	0	3.29296534843388						141	21	2	NaN	NaN	NaN	9.9912E-05	1	8072	102.55	80.159	1	294240			22490	1427	18974	19512	22490	22490		
YLAEVAAGDDKK	12	Unmodified	_YLAEVAAGDDKK_			0	0	1	P63104	P63104	P63104	YWHAZ	14-3-3 protein zeta/delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.330067	1278.64558	3.1635	0.0020257	-1.9159	-0.0012268	1.2476	0.00079888	640.328857504518	3.9356	0.24829	3.9356	3.9002	4.1484	0	504	40	0.987393073566096	0.0262445464858834	0.987393073566096	399.750645733495	0	10.6252258452897						469	29	4	NaN	NaN	NaN	1.3881E-06	1	11722	130.79	105.53	1	200600			22491	1427	18975	19513	22491	22491		
YLAEVACGDDRK	12	Unmodified	_YLAEVACGDDRK_			0	0	1	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	466.222364	1395.64526	-0.48122	-0.00022435	0.99052	0.0004618	0.50931	0.00023745	466.223097964259	4.1839	0.31921	4.1839	4.1396	4.4588	0	801	46	0.78619514174348	0.0306924975530096	0.78619514174348	477.010751395194	0	18.6221594901857						829	37	5	NaN	NaN	NaN	1.8084E-08	1	15305	162.8	147.22	1	355140			22492	863	18976	19514	22492	22492		
YLAEVACGDDRK	12	Unmodified	_YLAEVACGDDRK_			0	0	1	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.829908	1395.64526	2.7785	0.0019417	-1.7839	-0.0012466	0.99462	0.00069507	698.828976975807	4.1839	0.36354	4.1839	4.1396	4.5031	0	465	103	1.01360860968299	0.0686064539658676	1.01360860968299	409.996291446931	0	27.7507426699222						938	42	5	NaN	NaN	NaN	1.2668E-10	1	15306	179.31	147.36	1	451780			22493	863	18976	19514	22493	22493		
YLAEVATGDDK	11	Unmodified	_YLAEVATGDDK_			0	0	0	P31947	P31947	P31947	SFN	14-3-3 protein sigma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.287868	1180.56118	1.7378	0.0010276	0.93462	0.00055263	2.6725	0.0015802	591.288155010797	5.5317	0.26605	5.5317	5.443	5.7091	0	612	49	0.914549654013882	0.0324556427464261	0.914549654013882	370.588180057181	0	13.1514757292791						576	31	5	NaN	NaN	NaN	0.0013943	1	8890	76.85	60.393	1	473410			22494	933	18977	19515	22494	22494		
YLALESMCTLASSEFSHEAVK	21	Unmodified	_YLALESMCTLASSEFSHEAVK_			0	0	0	O95782;O94973	O95782;O94973	O95782	AP2A1;AP2A2	AP-2 complex subunit alpha-1;AP-2 complex subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	791.708221	2372.10283	1.7179	0.0013601	0.27288	0.00021604	1.9908	0.0015761	792.042645728568	15.579	0.10641	15.579	15.544	15.65	0	384	34	1.06790610341098	0.0220785024437311	1.06790610341098	645.313658876117	0	13.3415841982377						384	13	5	NaN	NaN	NaN	2.0707E-06	1	36221	81.578	79.188	1	134230			22495	452;399	18978	19516	22495	22495		
YLALQDLMLLSQYSPSR	17	Unmodified	_YLALQDLMLLSQYSPSR_			0	0	0	Q9BTX1	Q9BTX1	Q9BTX1	NDC1	Nucleoporin NDC1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	999.521876	1997.0292	1.2442	0.0012436	-4.9252	-0.0049228	-3.6809	-0.0036792	999.515115107993	19.756	0.10642	19.756	19.72	19.827	0	171	37	1.20972836110953	0.0238597451657223	1.20972836110953	487.876723476735	0	9.6225025953479						188	13	3	NaN	NaN	NaN	9.6597E-05	1	31582	88.42	76.938	1	36635			22496	2740	18979	19517	22496	22496		
YLAPSGPSGTLK	12	Unmodified	_YLAPSGPSGTLK_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	595.824421	1189.63429	1.5276	0.0009102	-0.47971	-0.00028582	1.0479	0.00062437	595.823982647885	6.3653	0.33697	6.3653	6.2146	6.5515	0	600	70	0.922661313351899	0.0466129929702679	0.922661313351899	373.842205177733	0	18.8865663161202						858	39	4	NaN	NaN	NaN	0.00073172	1	9154	62.271	48.276	1	601940			22497	1898	18980	19518	22497	22497		
YLAVESPFLK	10	Unmodified	_YLAVESPFLK_			0	0	0	P50416	P50416	P50416	CPT1A	Carnitine O-palmitoyltransferase 1, liver isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	583.826432	1165.63831	0.70125	0.00040941	-0.51959	-0.00030335	0.18167	0.00010606	583.826024315014	13.318	0.15077	13.318	13.256	13.407	0	567	55	0.944945209309785	0.0364519408200378	0.944945209309785	382.961501957443	0	14.7730152692155						488	18	3	NaN	NaN	NaN	0.00046955	1	8493	69.716	43.259	1	168320			22498	1163	18981	19519	22498	22498		
YLCAGAVDFYNNLENFNVDK	20	Unmodified	_YLCAGAVDFYNNLENFNVDK_			0	0	0	P13807	P13807	P13807	GYS1	Glycogen [starch] synthase, muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1183.54152	2365.0685	-0.10125	-0.00011984	1.7527	0.0020744	1.6515	0.0019546	1184.04469060327	17.362	0.062073	17.362	17.317	17.38	0	63	34	1.28111162701928	0.0217652629836462	1.28111162701928	516.109791141999	0	8.76837357161168						145	8	4	NaN	NaN	NaN	0.00070833	1	36174	54.556	52.708	1	20327			22499	686	18982	19520	22499	22499		
YLDEDTIYHLQPSGR	15	Unmodified	_YLDEDTIYHLQPSGR_			0	0	0	P31153	P31153	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	602.960086	1805.85843	1.2991	0.00078333	1.4897	0.00089823	2.7888	0.0016816	603.295320315398	10.339	0.25717	10.339	10.25	10.507	0	564	70	0.946969335010767	0.0465613677067455	0.946969335010767	573.277163462783	0	28.1873634330167						1196	30	5	NaN	NaN	NaN	1.1411E-06	1	27367	150.44	141.18	1	770690			22500	921	18983	19521	22500	22500		
YLDEDTIYHLQPSGR	15	Unmodified	_YLDEDTIYHLQPSGR_			0	0	0	P31153	P31153	P31153	MAT2A	S-adenosylmethionine synthase isoform type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	903.93649	1805.85843	2.2655	0.0020479	1.1601	0.0010487	3.4256	0.0030966	904.43779181214	10.339	0.18617	10.339	10.268	10.454	0	288	43	1.13199748998575	0.0279782603553778	1.13199748998575	456.861727036541	0	11.2917179220925						564	22	4	NaN	NaN	NaN	0.067672	1	27368	27.357	23.852	1	140250			22501	921	18983	19521	22501	22501		
YLDEIVK	7	Unmodified	_YLDEIVK_			0	0	0	P12270	P12270	P12270	TPR	Nucleoprotein TPR	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	440.244744	878.474934	-1.0104	-0.00044483	-0.12679	-5.5817E-05	-1.1372	-0.00050064	440.244542838397	7.66	0.10645	7.66	7.6245	7.7309	0	747	34	0.822982596624503	0.0224546522756353	0.822982596624503	334.805123091791	0	9.13498371649968						176	13	2	NaN	NaN	NaN	0.026367	1	1991	66.087	35.029	1	47838			22502	667	18984	19522	22502	22502		
YLDELMK	7	Unmodified	_YLDELMK_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	456.230779	910.447005	-0.86864	-0.0003963	-1.1216	-0.00051173	-1.9903	-0.00090803	456.230499186194	9.1681	0.16847	9.1681	9.0972	9.2656	0	762	43	0.812773098473386	0.0285965426373002	0.812773098473386	330.473037179102	0	11.6273364804035						493	20	4	NaN	NaN	NaN	0.018744	1	2512	66.087	28.479	1	230330			22503	1095	18985	19523	22503	22503		
YLDESSGGWR	10	Unmodified	_YLDESSGGWR_			0	0	0	O00115	O00115	O00115	DNASE2	Deoxyribonuclease-2-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.264727	1168.5149	0.70209	0.00041091	0.84549	0.00049483	1.5476	0.00090574	585.265396764471	6.72	0.11528	6.72	6.6668	6.7821	0	651	40	0.888155670855968	0.0264122944165538	0.888155670855968	359.935823673122	0	10.7039016445812						245	14	3	NaN	NaN	NaN	0.00071858	1	8561	56.378	43.551	1	63276			22504	48	18986	19524	22504	22504		
YLDLHDCYLK	10	Unmodified	_YLDLHDCYLK_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	447.216551	1338.62782	-1.2839	-0.00057417	-0.14167	-6.3358E-05	-1.4255	-0.00063752	447.216736325769	9.31	0.17737	9.31	9.2391	9.4164	0	765	43	0.810730346695089	0.0286084797705708	0.810730346695089	492.102274539929	0	17.3649574406793						405	21	3	NaN	NaN	NaN	0.055808	1	13548	11.355	7.1528	1	204420			22505	1601	18987	19525	22505	22505		
YLDLHDCYLK	10	Unmodified	_YLDLHDCYLK_			0	0	0	Q12874	Q12874	Q12874	SF3A3	Splicing factor 3A subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	670.321188	1338.62782	1.1237	0.00075324	1.6241	0.0010887	2.7478	0.0018419	670.322257941355	9.31	0.15964	9.31	9.2656	9.4253	0	477	34	1.0055473068722	0.0221762449945386	1.0055473068722	406.905462432226	0	8.97385449977645						348	19	3	NaN	NaN	NaN	0.0037639	1	13549	65.404	48.009	1	147060			22506	1601	18987	19525	22506	22506		
YLDLILNDFVR	11	Unmodified	_YLDLILNDFVR_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.879727	1379.7449	0.65421	0.00045198	-0.32088	-0.00022169	0.33332	0.00023029	690.879618703755	18.772	0.1153	18.772	18.736	18.851	0	456	55	1.01965166402748	0.0362608440937691	1.01965166402748	412.487276898951	0	14.6688691500955						499	14	4	NaN	NaN	NaN	3.9755E-05	1	14822	121.8	73.639	1	327020			22507	1801	18988	19526	22507	22507		
YLDPSFFQHR	10	Unmodified	_YLDPSFFQHR_			0	0	0	Q9HD45	Q9HD45	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	437.21565	1308.62512	-2.9353	-0.0012834	0.716	0.00031305	-2.2193	-0.00097031	437.2162368723	10.268	0.14188	10.268	10.206	10.347	0	807	28	0.782101955086014	0.018420624064141	0.782101955086014	474.836260909315	0	11.1836828911531						263	17	4	NaN	NaN	NaN	0.0003882	1	12612	72.038	63.275	1	74306			22508	2971	18989	19527	22508	22508		
YLDPSFFQHR	10	Unmodified	_YLDPSFFQHR_			0	0	0	Q9HD45	Q9HD45	Q9HD45	TM9SF3	Transmembrane 9 superfamily member 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	655.319837	1308.62512	0.80522	0.00052768	5.1381	0.0033671	5.9433	0.0038947	655.324595536155	10.25	0.15962	10.25	10.188	10.347	0	522	37	0.975277694896658	0.0242408171075922	0.975277694896658	394.748971622304	0	9.81160306913443						222	19	3	NaN	NaN	NaN	0.056622	1	12615	25.857	16.114	1	48528			22509	2971	18989	19527	22509	22509		
YLDQMEDLYEDFHIVK	16	Unmodified	_YLDQMEDLYEDFHIVK_			0	0	0	O43681	O43681	O43681	ASNA1	ATPase ASNA1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	686.655674	2056.94519	0.026007	1.7858E-05	-0.061595	-4.2295E-05	-0.035588	-2.4436E-05	686.989874567476	17.114	0.14185	17.114	17.069	17.211	0	573	37	0.940896116921038	0.024301288635538	0.940896116921038	569.070911348231	0	14.6978568856424						582	17	6	NaN	NaN	NaN	0.00012518	1	32654	93.772	82.29	1	232510			22510	219	18990	19528	22510	22510		
YLDSIPPGQYMDSSLVK	17	Unmodified	_YLDSIPPGQYMDSSLVK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.971684	1911.92882	1.9502	0.0018663	-2.3312	-0.0022309	-0.38108	-0.00036468	957.471006861294	13.629	0.31033	13.629	13.478	13.788	0	231	40	1.16991841121525	0.0259066892227233	1.16991841121525	471.966522221727	0	10.4512330924229						670	36	4	NaN	NaN	NaN	0.042169	1	29866	39.702	34.004	1	150290			22511	540	18991	19529	22511	22511		
YLDSIPPGQYMDSSLVK	17	Unmodified	_YLDSIPPGQYMDSSLVK_			0	0	0	P06493	P06493	P06493	CDK1	Cyclin-dependent kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	956.971684	1911.92882	1.6592	0.0015879	-0.39232	-0.00037544	1.2669	0.0012124	956.971013987637	13.637	0.4256	13.637	13.531	13.957	0	153	40	1.22165005014568	0.0258214732560063	1.22165005014568	492.83600629632	0	10.4168552644514						567	49	4	NaN	NaN	NaN	0.014456	1	29867	36.46	31.366	1	120910			22512	540	18991	19529	22512	22512		
YLDWAYR	7	Unmodified	_YLDWAYR_			0	0	0	Q9NYH9	Q9NYH9	Q9NYH9	UTP6	U3 small nucleolar RNA-associated protein 6 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	493.74016	985.465767	-1.0313	-0.0005092	0.64542	0.00031867	-0.38589	-0.00019053	493.740454116787	10.356	0.088653	10.356	10.33	10.418	0	753	37	0.81889964927511	0.024501095294577	0.81889964927511	332.587139460009	0	9.95085198152628						87	11	2	NaN	NaN	NaN	0.046046	1	3955	35.633	26.24	1	16840			22513	3114	18992	19530	22513	22513		
YLEAGAAGLR	10	Unmodified	_YLEAGAAGLR_			0	0	0	Q9NZL4	Q9NZL4	Q9NZL4	HSPBP1	Hsp70-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.777274	1019.53999	0.49759	0.00025416	0.19056	9.7334E-05	0.68815	0.00035149	510.777786144921	6.4806	0.21282	6.4806	6.4363	6.6491	0	675	55	0.871889544407995	0.0366140385058672	0.871889544407995	353.9454564558	0	14.8635485478252						377	25	3	NaN	NaN	NaN	0.0010956	1	4732	77.072	59.676	1	135350			22514	3134	18993	19531	22514	22514		
YLEEERPFAIEQVTGMLLAK	20	Unmodified	_YLEEERPFAIEQVTGMLLAK_			0	0	1	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	779.743483	2336.20862	0.084437	6.5839E-05	-0.23118	-0.00018026	-0.14674	-0.00011442	780.077565413424	18.178	0.133	18.178	18.124	18.257	0	579	43	0.936845902828289	0.0283554323651288	0.936845902828289	566.167309748635	0	17.1361360608596						569	16	6	NaN	NaN	NaN	9.9582E-29	1	35943	173.26	164.11	1	234580			22515	450	18994	19532	22515	22515		
YLEEERPFAIEQVTGMLLAK	20	Oxidation (M)	_YLEEERPFAIEQVTGM(Oxidation (M))LLAK_	YLEEERPFAIEQVTGM(1)LLAK	YLEEERPFAIEQVTGM(120)LLAK	0	1	1	O95757	O95757	O95757	HSPA4L	Heat shock 70 kDa protein 4L	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	785.075121	2352.20353	0.10398	8.1628E-05	-1.7425	-0.001368	-1.6385	-0.0012864	785.408521126874	16.236	0.079795	16.236	16.2	16.28	0	555	28	0.953040030838688	0.0182095678399629	0.953040030838688	575.93082397194	0	11.004208712003						208	10	4	NaN	NaN	NaN	7.4047E-12	1	36065	122.13	118.69	1	53647			22516	450	18994	19533	22516	22516	65	
YLEEIATQMR	10	Unmodified	_YLEEIATQMR_			0	0	0	Q01813	Q01813	Q01813	PFKP	ATP-dependent 6-phosphofructokinase, platelet type	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.313363	1252.61217	1.6051	0.0010069	-0.90749	-0.00056928	0.69761	0.00043762	627.31303098706	9.9041	0.1862	9.9041	9.8332	10.019	0	570	43	0.942920803299286	0.0283436532440857	0.942920803299286	381.830608652546	0	11.4776069546435						510	22	5	NaN	NaN	NaN	2.2684E-05	1	10984	122.44	101.16	1	286600			22517	1521	18995	19534	22517	22517		
YLEGTSCIAGVLVPAK	16	Unmodified	_YLEGTSCIAGVLVPAK_			0	0	0	P58107	P58107	P58107	EPPK1	Epiplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	839.447648	1676.88074	2.801	0.0023513	-2.9889	-0.002509	-0.18795	-0.00015777	839.947087215207	13.832	0.23938	13.832	13.655	13.895	0	309	106	1.11800162319566	0.0700083324538914	1.11800162319566	451.477548536854	0	28.271148858524						1169	28	4	NaN	NaN	NaN	3.075E-05	1	23824	86.838	49.879	1	372750			22518	1298	18996	19535	22518	22518		
YLELLGYR	8	Unmodified	_YLELLGYR_			0	0	0	O94979	O94979	O94979	SEC31A	Protein transport protein Sec31A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	513.784567	1025.55458	0.11371	5.8424E-05	-6.1663	-0.0031682	-6.0526	-0.0031097	513.781126992823	13.034	0.22166	13.034	12.928	13.15	0	669	82	0.875957769340875	0.0548563407396099	0.875957769340875	355.56921358942	0	22.2673131284095						755	26	3	NaN	NaN	NaN	0.012127	1	4874	63.301	31.174	1	302820			22519	400	18997	19536	22519	22519		
YLENQTFR	8	Unmodified	_YLENQTFR_			0	0	0	O00139	O00139	O00139	KIF2A	Kinesin-like protein KIF2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	535.766906	1069.51926	1.3524	0.00072458	6.0301	0.0032307	7.3825	0.0039553	535.767475174757	5.6381	0.13306	5.6381	5.6026	5.7357	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	359.499709107306	0	7.42147706128753						216	16	3	NaN	NaN	NaN	0.016799	1	5945	60.589	39.931	1	56762			22520	50	18998	19537	22520	22520		
YLENYDAIR	9	Unmodified	_YLENYDAIR_			0	0	0	P15374	P15374	P15374	UCHL3	Ubiquitin carboxyl-terminal hydrolase isozyme L3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.785296	1155.55604	1.1899	0.0006887	0.87251	0.000505	2.0624	0.0011937	578.785846948354	7.8463	0.25711	7.8463	7.6956	7.9527	0	606	46	0.918606045818476	0.0304208382695857	0.918606045818476	372.324907198098	0	12.3300252999315						491	30	4	NaN	NaN	NaN	0.0022344	1	8211	81.642	47.829	1	162890			22521	712	18999	19538	22521	22521		
YLEPLYNDYR	10	Unmodified	_YLEPLYNDYR_			0	0	0	Q8NAV1	Q8NAV1	Q8NAV1	PRPF38A	Pre-mRNA-splicing factor 38A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.324785	1344.63502	1.6964	0.0011422	3.104	0.00209	4.8004	0.0032322	673.326780631742	10.454	0.13304	10.454	10.401	10.534	0	459	43	1.01763759082241	0.0282028744341156	1.01763759082241	411.779119065587	0	11.4120733101183						320	16	3	NaN	NaN	NaN	0.0056272	1	13728	69.716	62.069	1	77339			22522	2280	19000	19539	22522	22522		
YLEPMSGLESAIK	13	Unmodified	_YLEPMSGLESAIK_			0	0	0		REV__Q9P2J5	REV__Q9P2J5			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	479.914649	1436.72212	-0.14904	-7.1528E-05	-3.2642	-0.0015665	-3.4133	-0.0016381	479.913137782749	4.0066	0.15077	4.0066	3.9711	4.1219	0	795	34	0.790287188799094	0.0225046954516063	0.790287188799094	479.359224694025	0	13.6505228941521						281	18	3	NaN	NaN	NaN	0.0042264	1	16586	47.561	31.979	1	86219	+		22523	3515	19001	19540	22523	22523		
YLEQLHQLYSDSFPMELR	18	Unmodified	_YLEQLHQLYSDSFPMELR_			0	0	0	P40763	P40763	P40763	STAT3	Signal transducer and activator of transcription 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	757.036778	2268.0885	-0.037989	-2.8759E-05	-3.0374	-0.0022994	-3.0753	-0.0023282	757.033553788237	16.475	0.13301	16.475	16.395	16.528	0	579	70	0.936845902828289	0.0466194521646726	0.936845902828289	566.267789411998	0	28.1786941066722						293	16	3	NaN	NaN	NaN	2.3668E-05	1	35353	53.773	44.617	1	55962			22524	1020	19002	19541	22524	22524		
YLESEEYQER	10	Unmodified	_YLESEEYQER_			0	0	0	Q9Y676	Q9Y676	Q9Y676	MRPS18B	28S ribosomal protein S18b, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	673.298964	1344.58338	2.103	0.0014159	-0.23187	-0.00015612	1.8711	0.0012598	673.298970474826	4.8667	0.13298	4.8667	4.8312	4.9642	0	513	34	0.981336640919867	0.0222161383936255	0.981336640919867	397.090391299378	0	8.98959105370471						256	16	3	NaN	NaN	NaN	0.00072042	1	13725	90.761	86.222	1	89347			22525	3451	19003	19542	22525	22525		
YLESLVQTQQQLIK	14	Unmodified	_YLESLVQTQQQLIK_			0	0	0	O60749	O60749	O60749	SNX2	Sorting nexin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	845.972345	1689.93014	1.8228	0.0015421	-7.3317	-0.0062024	-5.5089	-0.0046603	846.464160673071	13.371	0.10646	13.371	13.318	13.425	0	318	169	1.11199926528787	0.111759608644562	1.11199926528787	449.025238085407	0	45.1285234140558						668	13	4	NaN	NaN	NaN	2.3915E-24	1	24215	216.04	181.85	1	178130			22526	278	19004	19543	22526	22526		
YLETLLYSQQQLAK	14	Unmodified	_YLETLLYSQQQLAK_			0	0	0	Q13596	Q13596	Q13596	SNX1	Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	849.45907	1696.90359	1.3756	0.0011685	-0.36213	-0.00030761	1.0135	0.00086092	849.45935937097	13.336	0.10646	13.336	13.3	13.407	0	216	43	1.17988115188462	0.0278937633686938	1.17988115188462	476.419986926173	0	11.2631228647124						306	13	4	NaN	NaN	NaN	3.6983E-06	1	24417	110.52	96.066	1	86605			22527	1689	19005	19544	22527	22527		
YLETPGDENEHAHFQK	16	Unmodified	_YLETPGDENEHAHFQK_			0	0	0	P05067	P05067	P05067	APP	Amyloid beta A4 protein;N-APP;Soluble APP-alpha;Soluble APP-beta;C99;Beta-amyloid protein 42;Beta-amyloid protein 40;C83;P3(42);P3(40);C80;Gamma-secretase C-terminal fragment 59;Gamma-secretase C-terminal fragment 57;Gamma-secretase C-terminal fragment 50;C31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.958745	1913.8544	0.80613	0.00051508	2.567	0.0016402	3.3732	0.0021553	639.294707089301	4.6539	0.079805	4.6539	4.6184	4.6982	0	684	34	0.86578508874114	0.0223830071318586	0.86578508874114	523.904551278115	0	13.544422813659						183	10	4	NaN	NaN	NaN	9.3066E-07	1	29919	90.689	83.113	1	42614			22528	523	19006	19545	22528	22528		
YLEVVLNTLQQASQAQVDK	19	Unmodified	_YLEVVLNTLQQASQAQVDK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	716.382942	2146.127	0.23008	0.00016483	-0.92534	-0.0006629	-0.69526	-0.00049807	716.716869768355	17.335	0.097534	17.335	17.291	17.388	0	528	49	0.971237000454584	0.0323166232596742	0.971237000454584	587.258085123216	0	19.5402340358141						376	12	4	NaN	NaN	NaN	1.7898E-07	1	33974	130.65	115.13	1	85581			22529	1780	19007	19546	22529	22529		
YLEVVLNTLQQASQAQVDK	19	Unmodified	_YLEVVLNTLQQASQAQVDK_			0	0	0	Q14974	Q14974	Q14974	KPNB1	Importin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1074.07078	2146.127	0.45044	0.0004838	0.62113	0.00066713	1.0716	0.0011509	1074.57284766493	17.335	0.15959	17.335	17.291	17.45	0	81	103	1.2692388538616	0.0673621139819836	1.2692388538616	511.631400414536	0	27.1537328113058						1257	19	6	NaN	NaN	NaN	1.1961E-26	1	33976	206.14	180.44	1	669010			22530	1780	19007	19546	22530	22530		
YLFLGDYVDR	10	Unmodified	_YLFLGDYVDR_			0	0	0	Q08209;P16298;P48454	Q08209	Q08209	PPP3CA;PPP3CB;PPP3CC	Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2B catalytic subunit beta isoform;Serine/threonine-protein phosphatase 2B catalytic subunit gamma isoform	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	630.816596	1259.61864	0.82334	0.00051937	1.2066	0.00076117	2.03	0.0012805	630.816936337861	14.613	0.133	14.613	14.551	14.684	0	528	31	0.971237000454584	0.0202034745303079	0.971237000454584	393.273236033669	0	8.18078986276174						216	16	3	NaN	NaN	NaN	0.004753	1	11197	33.426	19.431	1	42610			22531	726	19008	19547	22531	22531		
YLFNQLFGEEDADQEVSPDR	20	Unmodified	_YLFNQLFGEEDADQEVSPDR_			0	0	0	Q9UBT2	Q9UBT2	Q9UBT2	UBA2	SUMO-activating enzyme subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1186.53749	2371.06043	0.08478	0.00010059	3.1348	0.0037195	3.2196	0.0038201	1187.04067865666	17.114	0.088656	17.114	17.078	17.167	0	72	37	1.27517645957152	0.0237488006707973	1.27517645957152	513.711154348336	0	9.56732200897369						227	11	3	NaN	NaN	NaN	0.00088572	1	36215	62.494	55.183	1	54365			22532	3188	19009	19548	22532	22532		
YLGAMQVADK	10	Unmodified	_YLGAMQVADK_			0	0	0	Q8WYA6	Q8WYA6	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.278792	1094.54303	0.71936	0.00039441	-0.36426	-0.00019972	0.3551	0.00019469	548.278347552059	6.8175	0.19506	6.8175	6.7466	6.9417	0	648	40	0.890187667287968	0.0264122944165538	0.890187667287968	361.043611508444	0	10.7123368642356						318	23	4	NaN	NaN	NaN	0.0048338	1	6568	46.033	27.63	1	91434			22533	2400	19010	19549	22533	22533		
YLGEGPR	7	Unmodified	_YLGEGPR_			0	0	0	P43686	P43686	P43686	PSMC4	26S protease regulatory subunit 6B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	396.205953	790.397353	-0.9094	-0.00036031	1.1433	0.00045299	0.23392	9.2682E-05	396.206248238246	3.2528	0.28387	3.2528	3.2084	3.4923	0	837	34	0.761618911097395	0.0225486205896858	0.761618911097395	310.3716982369	0	9.18891792646855						342	33	3	NaN	NaN	NaN	0.025625	1	905	51.456	31.109	1	82522			22534	1068	19011	19550	22534	22534		
YLGINSDGLVVGR	13	Unmodified	_YLGINSDGLVVGR_			0	0	0	Q14331	Q14331	Q14331	FRG1	Protein FRG1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	681.872434	1361.73031	1.4672	0.0010004	0.3081	0.00021008	1.7753	0.0012105	681.872973360902	12.795	0.097535	12.795	12.751	12.848	0	486	31	0.999498404980629	0.020167188996535	0.999498404980629	404.387589278827	0	8.15945368216705						186	12	3	NaN	NaN	NaN	0.00029461	1	14263	57.293	41.414	1	49620			22535	1748	19012	19551	22535	22535		
YLGIPGDK	8	Unmodified	_YLGIPGDK_			0	0	0	Q16881	Q16881	Q16881	TXNRD1	Thioredoxin reductase 1, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	431.737086	861.459619	-1.8157	-0.00078389	-0.69233	-0.0002989	-2.508	-0.0010828	431.736777713141	7.4383	0.23052	7.4383	7.3053	7.5358	0	789	37	0.794378096728713	0.0245386198343958	0.794378096728713	323.266432572781	0	9.98581421969118						351	27	3	NaN	NaN	NaN	0.036908	1	1734	42.835	20.449	1	111840			22536	1914	19013	19552	22536	22536		
YLGNTVDLSSFDFR	14	Unmodified	_YLGNTVDLSSFDFR_			0	0	0	Q9UBB5	Q9UBB5	Q9UBB5	MBD2	Methyl-CpG-binding domain protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	817.39647	1632.77839	0.93894	0.00076748	1.2029	0.00098325	2.1418	0.0017507	817.397693354019	15.934	0.11526	15.934	15.908	16.023	0	360	31	1.08395544855938	0.0200506245124248	1.08395544855938	437.825710958426	0	8.09874515043958						177	14	3	NaN	NaN	NaN	4.3768E-06	1	22564	115.04	100.58	1	33418			22537	3167	19014	19553	22537	22537		
YLGQDYEQLR	10	Unmodified	_YLGQDYEQLR_			0	0	0	P07384	P07384	P07384	CAPN1	Calpain-1 catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	642.814584	1283.61462	1.7167	0.0011035	0.93893	0.00060356	2.6557	0.0017071	642.815158888178	8.3785	0.19515	8.3785	8.3342	8.5293	0	522	34	0.975277694896658	0.0222192115744939	0.975277694896658	394.829332506687	0	8.99517801000451						389	23	4	NaN	NaN	NaN	2.0169E-05	1	11863	98.009	82.427	1	171930			22538	559	19015	19554	22538	22538		
YLHDESGLNR	10	Unmodified	_YLHDESGLNR_			0	0	0	Q15019	Q15019	Q15019	SEPT2	Septin-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	401.863276	1202.568	-0.95607	-0.00038421	1.0678	0.00042913	0.11177	4.4918E-05	401.863771667186	3.2883	0.16847	3.2883	3.2351	3.4035	0	852	19	0.751366682244005	0.0123069623830652	0.751366682244005	456.595389934008	0	7.47877490577093						196	20	3	NaN	NaN	NaN	0.001755	1	9529	88.921	79.528	1	40458			22539	1792	19016	19555	22539	22539		
YLHENLPIPQR	11	Unmodified	_YLHENLPIPQR_			0	0	0	P54886	P54886	P54886	ALDH18A1	Delta-1-pyrroline-5-carboxylate synthase;Glutamate 5-kinase;Gamma-glutamyl phosphate reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.375143	1378.73573	1.8435	0.0012727	0.0084965	5.8658E-06	1.852	0.0012786	690.375542554598	7.9261	0.23047	7.9261	7.802	8.0325	0	447	28	1.02569221487577	0.0181166496995924	1.02569221487577	414.933917604519	0	7.32891634029903						403	27	3	NaN	NaN	NaN	8.1554E-05	1	14781	81.335	71.821	1	113470			22540	1259	19017	19556	22540	22540		
YLHSCPESVK	10	Unmodified	_YLHSCPESVK_			0	0	0	Q5TFE4	Q5TFE4	Q5TFE4	NT5DC1	5-nucleotidase domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	407.197379	1218.57031	-0.79693	-0.00032451	3.5957	0.0014642	2.7988	0.0011397	407.198936443945	2.7828	0.070935	2.7828	2.7562	2.8272	0	852	22	0.751366682244005	0.0143591237595029	0.751366682244005	456.527459747087	0	8.72454747998933						77	9	2	NaN	NaN	NaN	0.068696	1	9970	12.596	8.7029	1	15844			22541	2001	19018	19557	22541	22541		
YLIANATNPESK	12	Unmodified	_YLIANATNPESK_			0	0	0	P27348	P27348	P27348	YWHAQ	14-3-3 protein theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.843342	1319.67213	1.9415	0.001283	1.3481	0.00089091	3.2896	0.0021739	660.844361439484	6.6402	0.39014	6.6402	6.5338	6.9239	0	492	64	0.995464410099171	0.0423598959257468	0.995464410099171	402.884432006369	0	17.1439003110049						1321	45	7	NaN	NaN	NaN	3.3509E-11	1	12969	183	159.43	1	1354900			22542	863	19019	19558	22542	22542		
YLIATSEQPIAALHR	15	Unmodified	_YLIATSEQPIAALHR_			0	0	0	P49591	P49591	P49591	SARS	Serine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.645661	1681.91515	0.94254	0.00052937	-0.76738	-0.00043099	0.17516	9.8378E-05	561.64540711728	10.888	0.15963	10.888	10.835	10.995	0	648	37	0.890187667287968	0.0243856529681402	0.890187667287968	539.204824654815	0	14.7708873263076						446	19	5	NaN	NaN	NaN	3.5532E-07	1	23971	130.79	122.79	1	172570			22543	1139	19020	19559	22543	22543		
YLIEFELK	8	Unmodified	_YLIEFELK_			0	0	0	Q14C86	Q14C86	Q14C86	GAPVD1	GTPase-activating protein and VPS9 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.794601	1053.57465	-0.44103	-0.00023277	0.96306	0.0005083	0.52203	0.00027553	527.793996441373	14.666	0.09755	14.666	14.631	14.728	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	359.568899051464	0	9.8965213428973						200	12	3	NaN	NaN	NaN	0.050075	1	5562	27.736	14.909	1	39626			22544	1784	19021	19560	22544	22544		
YLILPVHSNIPMMDQK	16	Unmodified	_YLILPVHSNIPMMDQK_			0	0	0	Q7L2E3	Q7L2E3	Q7L2E3	DHX30	Putative ATP-dependent RNA helicase DHX30	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	633.66708	1897.97941	-0.43069	-0.00027291	-1.435	-0.00090934	-1.8657	-0.0011823	634.000516355879	14.081	0.079786	14.081	14.036	14.116	0	696	49	0.857641857947968	0.032586506939132	0.857641857947968	519.008139034386	0	19.7199590567745						322	10	4	NaN	NaN	NaN	0.00013193	1	29568	84.102	75.728	1	84692			22545	2114	19022	19561	22545	22545		
YLIPNATQPESK	12	Unmodified	_YLIPNATQPESK_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.858992	1359.70343	2.8231	0.0019221	0.19274	0.00013123	3.0158	0.0020534	680.85967946295	7.6688	0.32818	7.6688	7.6068	7.935	0	510	118	0.983355730988811	0.078722879865007	0.983355730988811	397.862376584959	0	31.851008834015						1646	38	5	NaN	NaN	NaN	4.5928E-05	1	14193	127.93	112.05	1	1000600			22546	932	19023	19562	22546	22546		
YLIVDEGHR	9	Unmodified	_YLIVDEGHR_			0	0	0	Q9NRZ9	Q9NRZ9	Q9NRZ9	HELLS	Lymphoid-specific helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	551.288005	1100.56146	0.62115	0.00034243	1.1505	0.00063427	1.7717	0.0009767	551.288102923961	5.4342	0.13299	5.4342	5.3632	5.4962	0	612	19	0.914549654013882	0.012169175881382	0.914549654013882	370.899155870779	0	4.9352564316635						135	16	2	NaN	NaN	NaN	0.029812	1	6735	53.878	26.173	1	31166			22547	3032	19024	19563	22547	22547		
YLLADCNEAFIK	12	Unmodified	_YLLADCNEAFIK_			0	0	0	O60216	O60216	O60216	RAD21	Double-strand-break repair protein rad21 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.860677	1455.7068	1.3404	0.00097696	1.0138	0.00073888	2.3541	0.0017158	728.861113978673	12.493	0.1862	12.493	12.449	12.635	0	411	43	1.04982941439551	0.0281406425229616	1.04982941439551	424.475364650598	0	11.3780480263207						456	22	4	NaN	NaN	NaN	0.039717	1	17121	43.168	30.573	1	108180			22548	246	19025	19564	22548	22548		
YLLDHFLSMGINK	13	Unmodified	_YLLDHFLSMGINK_			0	0	0	Q7Z4S6	Q7Z4S6	Q7Z4S6	KIF21A	Kinesin-like protein KIF21A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	517.606038	1549.79629	-2.5999	-0.0013457	0.9548	0.00049421	-1.6451	-0.00085153	517.606756110152	16.342	0.097537	16.342	16.307	16.404	0	780	28	0.800512323802183	0.0183975615701674	0.800512323802183	485.223861806583	0	11.1515283493711						179	12	3	NaN	NaN	NaN	0.0014161	1	20051	71.066	65.915	1	44367			22549	2140	19026	19565	22549	22549		
YLLDLLR	7	Unmodified	_YLLDLLR_			0	0	0	Q5U3C3	Q5U3C3	Q5U3C3	TMEM164	Transmembrane protein 164	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	453.276378	904.538203	-1.4058	-0.00063723	-1.2748	-0.00057783	-2.6806	-0.0012151	453.27588000449	16.014	0.1064	16.014	15.97	16.076	0	726	34	0.837263974740672	0.0224328108600214	0.837263974740672	340.464057867671	0	9.12205235767658						158	13	2	NaN	NaN	NaN	0.009458	1	2409	84.064	16.175	1	38640			22550	2003	19027	19566	22550	22550		
YLLDSCAPLLR	11	Unmodified	_YLLDSCAPLLR_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.852655	1319.69076	1.5317	0.0010122	-1.8855	-0.001246	-0.3538	-0.00023381	660.851168355468	13.815	0.23052	13.815	13.735	13.966	0	480	64	1.00353128488872	0.0423598959257468	1.00353128488872	406.149212415193	0	17.1438983789523						502	27	2	NaN	NaN	NaN	2.3136E-07	1	12975	114.64	75.314	1	300780			22551	2420	19028	19567	22551	22551		
YLLETSGNLDGLEYK	15	Unmodified	_YLLETSGNLDGLEYK_			0	0	0	P43490	P43490	P43490	NAMPT	Nicotinamide phosphoribosyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	857.930342	1713.84613	2.5665	0.0022019	3.5757	0.0030677	6.1422	0.0052696	857.93245773652	13.487	0.19508	13.487	13.434	13.629	0	306	46	1.12000185836644	0.0299994059513333	1.12000185836644	452.205307293027	0	12.1123822121306						425	23	3	NaN	NaN	NaN	0.025812	1	24880	40.861	32.859	1	192680			22552	1067	19029	19568	22552	22552		
YLLGDMEGR	9	Unmodified	_YLLGDMEGR_			0	0	0	Q16531	Q16531	Q16531	DDB1	DNA damage-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.255317	1052.49608	0.09185	4.8428E-05	-1.7244	-0.00090919	-1.6325	-0.00086076	527.255903892265	9.3987	0.19508	9.3987	9.3278	9.5228	0	645	79	0.892219381832517	0.0528649499022339	0.892219381832517	362.047313220657	0	21.4516894223232						860	23	5	NaN	NaN	NaN	0.0010834	1	5523	67.464	39.759	1	321270			22553	1884	19030	19569	22553	22553		
YLLHGLECVVAMHQAQLISK	20	Unmodified	_YLLHGLECVVAMHQAQLISK_			0	0	0	P55010	P55010	P55010	EIF5	Eukaryotic translation initiation factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	770.741419	2309.20243	1.9554	0.0015071	0.17974	0.00013853	2.1352	0.0016457	771.076122374436	14.32	0.15072	14.32	14.258	14.409	0	405	28	1.05384839605172	0.018084171566231	1.05384839605172	636.919839207758	0	10.929624877091						406	18	5	NaN	NaN	NaN	3.6735E-11	1	35715	144.72	142.41	1	135660			22554	1261	19031	19570	22554	22554		
YLLLLAAGDPR	11	Unmodified	_YLLLLAAGDPR_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	601.350606	1200.68666	0.46845	0.0002817	-1.028	-0.0006182	-0.55958	-0.0003365	601.349571480116	14.631	0.15074	14.631	14.56	14.71	0	531	37	0.969216233931596	0.0242475250130607	0.969216233931596	392.663798174494	0	9.82353053388033						276	18	3	NaN	NaN	NaN	0.00069378	1	9495	69.915	43.692	1	59163			22555	2013	19032	19571	22555	22555		
YLLLMDLQDRNEK	13	Unmodified	_YLLLMDLQDRNEK_			0	0	1	P48163	P48163	P48163	ME1	NADP-dependent malic enzyme	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	550.955507	1649.84469	-0.37684	-0.00020762	-0.80156	-0.00044162	-1.1784	-0.00064925	550.955218122788	12.857	0.11529	12.857	12.813	12.928	0	756	31	0.816857749704129	0.0204204181290417	0.816857749704129	494.865893398767	0	12.3710260013628						275	14	4	NaN	NaN	NaN	1.3379E-05	1	23046	120.65	113.1	1	78695			22556	1106	19033	19572	22556	22556		
YLLPLILGGR	10	Unmodified	_YLLPLILGGR_			0	0	0	O75381	O75381	O75381	PEX14	Peroxisomal membrane protein PEX14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.852784	1113.69102	-0.073443	-4.0971E-05	-1.4473	-0.0008074	-1.5208	-0.00084837	557.851779376026	17.69	0.1596	17.69	17.637	17.796	0	633	37	0.900343422309015	0.024365365507813	0.900343422309015	365.084537466184	0	9.88002797177245						357	19	3	NaN	NaN	NaN	0.00064591	1	7097	81.32	62.918	1	116150			22557	328	19034	19573	22557	22557		
YLLQETWLEK	10	Unmodified	_YLLQETWLEK_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.853178	1321.6918	1.2423	0.00082223	1.7191	0.0011378	2.9614	0.00196	661.854101173068	13.921	0.22166	13.921	13.77	13.992	0	492	55	0.995464410099171	0.0363059678066375	0.995464410099171	402.87805118347	0	14.6935213432802						443	26	4	NaN	NaN	NaN	0.00079749	1	13039	69.915	50.591	1	133220			22558	2549	19035	19574	22558	22558		
YLLQYQEPIPCEQLVTALCDIK	22	Unmodified	_YLLQYQEPIPCEQLVTALCDIK_			0	0	0	P25789	P25789	P25789	PSMA4	Proteasome subunit alpha type-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	898.788763	2693.34446	1.1823	0.0010626	-1.3919	-0.001251	-0.20961	-0.00018839	899.121908584873	19.472	0.10639	19.472	19.428	19.534	0	444	40	1.02770517576159	0.0261684967549374	1.02770517576159	620.589684708646	0	15.8020992143113						512	13	6	NaN	NaN	NaN	1.5247E-08	1	37588	103.17	97.842	1	223580			22559	844	19036	19575	22559	22559		
YLLSQSSPAPLTAAEEELR	19	Unmodified	_YLLSQSSPAPLTAAEEELR_			0	0	0	Q12792	Q12792	Q12792	TWF1	Twinfilin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.0364	2074.05825	1.4232	0.0014773	-0.85553	-0.00088807	0.56765	0.00058924	1038.53696933903	15.251	0.10639	15.251	15.189	15.296	0	153	82	1.22165005014568	0.053666049258249	1.22165005014568	492.558330424789	0	21.6376691671935						638	13	4	NaN	NaN	NaN	0.0011764	1	32935	54.912	50.315	1	215500			22560	1595	19037	19576	22560	22560		
YLMDEGAHLHIYDPK	15	Unmodified	_YLMDEGAHLHIYDPK_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	601.290778	1800.85051	1.1022	0.00066277	0.22363	0.00013447	1.3259	0.00079724	601.291018713693	9.7622	0.097536	9.7622	9.7268	9.8243	0	603	31	0.920633820089869	0.0202763400038137	0.920633820089869	557.345948864058	0	12.275169250042						220	12	4	NaN	NaN	NaN	0.053121	1	27235	30.068	27.767	1	55122			22561	275	19038	19577	22561	22561		
YLMEEDEDAYK	11	Unmodified	_YLMEEDEDAYK_			0	0	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	703.295033	1404.57551	2.3144	0.0016277	1.7406	0.0012242	4.0551	0.0028519	703.296450012153	7.6245	0.39025	7.6245	7.5624	7.9527	0	483	58	1.00151498427745	0.0383097280775055	1.00151498427745	405.079236846734	0	15.4950007309554						1376	45	6	NaN	NaN	NaN	1.3565E-07	1	15592	124.81	122.33	1	1553100			22562	1086	19039	19578	22562	22562		
YLMEEDEDAYK	11	Oxidation (M)	_YLM(Oxidation (M))EEDEDAYK_	YLM(1)EEDEDAYK	YLM(46)EEDEDAYK	0	1	0	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	711.29249	1420.57043	1.9028	0.0013535	-0.25213	-0.00017934	1.6507	0.0011741	711.292112928173	5.4519	0.27483	5.4519	5.3632	5.6381	0	492	43	0.995464410099171	0.0282457786988155	0.995464410099171	402.58778846908	0	11.4232166058155						720	32	4	NaN	NaN	NaN	0.055027	1	16102	46.033	42.425	1	375190			22563	1086	19039	19579	22563	22563	387	
YLMEEDEDAYKK	12	Unmodified	_YLMEEDEDAYKK_			0	0	1	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	511.897435	1532.67048	-1.0362	-0.00053045	1.0548	0.00053996	0.018586	9.5141E-06	511.898140811342	5.7711	0.097519	5.7711	5.7357	5.8332	0	786	28	0.796423123669906	0.0184052442534667	0.796423123669906	482.792924096067	0	11.157287411354						241	12	4	NaN	NaN	NaN	1.9203E-07	1	19503	129.28	112.29	1	81468			22564	1086	19040	19580	22564	22564		
YLMEEDEDAYKK	12	Unmodified	_YLMEEDEDAYKK_			0	0	1	P46777	P46777	P46777	RPL5	60S ribosomal protein L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	767.342514	1532.67048	2.9055	0.0022295	-1.041	-0.00079881	1.8645	0.0014307	767.34263330232	5.7711	0.22165	5.7711	5.7002	5.9219	0	420	58	1.04379886199097	0.0382198802455282	1.04379886199097	421.837473011738	0	15.4460579415007						690	26	5	NaN	NaN	NaN	0.00027943	1	19505	78.932	64.937	1	271100			22565	1086	19040	19580	22565	22565		
YLMIEEYLTK	10	Unmodified	_YLMIEEYLTK_			0	0	0	O95817	O95817	O95817	BAG3	BAG family molecular chaperone regulator 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	651.836139	1301.65773	1.3812	0.00090031	-0.62212	-0.00040552	0.75907	0.00049479	651.835905199382	15.535	0.10642	15.535	15.5	15.606	0	483	31	1.00151498427745	0.0201644018514301	1.00151498427745	405.391349908506	0	8.16210862041811						264	13	4	NaN	NaN	NaN	0.0023529	1	12399	76.605	62.069	1	71883			22566	456	19041	19581	22566	22566		
YLNAGAGGIAGAFIHEK	17	Unmodified	_YLNAGAGGIAGAFIHEK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	844.941379	1687.8682	0.98195	0.00082969	0.60529	0.00051144	1.5872	0.0013411	844.941915540212	11.713	0.12411	11.713	11.669	11.793	0	132	40	1.23554629282893	0.025800234960712	1.23554629282893	498.918445761853	0	10.4182362098442						369	15	4	NaN	NaN	NaN	1.2785E-06	1	24146	97.084	92.556	1	155530			22567	1903	19042	19582	22567	22567		
YLNAGAGGIAGAFIHEK	17	Unmodified	_YLNAGAGGIAGAFIHEK_			0	0	0	Q16719	Q16719	Q16719	KYNU	Kynureninase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	563.630011	1687.8682	0.62971	0.00035492	1.1664	0.0006574	1.7961	0.0010123	563.630696255486	11.713	0.133	11.713	11.669	11.802	0	552	37	0.955063035883597	0.0242777450705638	0.955063035883597	578.484495087174	0	14.7051017276643						379	16	5	NaN	NaN	NaN	0.00049218	1	24147	87.573	86.691	1	194160			22568	1903	19042	19582	22568	22568		
YLNFFTK	7	Unmodified	_YLNFFTK_			0	0	0	P12004	P12004	P12004	PCNA	Proliferating cell nuclear antigen	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	466.747453	931.480354	-1.3679	-0.00063844	-0.86658	-0.00040447	-2.2344	-0.0010429	466.74719299187	12.032	0.35473	12.032	11.97	12.325	0	744	43	0.82502364452135	0.0285726907737741	0.82502364452135	335.341512497876	0	11.6137390774667						796	41	4	NaN	NaN	NaN	0.0079642	1	2901	96.51	54.387	1	443460			22569	662	19043	19583	22569	22569		
YLNIFGESQPNPK	13	Unmodified	_YLNIFGESQPNPK_			0	0	0	Q9UJS0	Q9UJS0	Q9UJS0	SLC25A13	Calcium-binding mitochondrial carrier protein Aralar2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	753.882998	1505.75144	0.71892	0.00054198	2.5214	0.0019008	3.2403	0.0024428	753.88542190466	11.944	0.32809	11.944	11.758	12.086	0	432	70	1.035754240522	0.0462917369745024	1.035754240522	418.653311015322	0	18.7111847567803						821	38	4	NaN	NaN	NaN	0.0025004	1	18679	63.212	35.623	1	300430			22570	3248	19044	19584	22570	22570		
YLNNVVEQLK	10	Unmodified	_YLNNVVEQLK_			0	0	0	Q13257	Q13257	Q13257	MAD2L1	Mitotic spindle assembly checkpoint protein MAD2A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	610.337695	1218.66084	0.96124	0.00058668	-0.53944	-0.00032924	0.42179	0.00025744	610.338498829837	10.206	0.1685	10.206	10.152	10.321	0	531	43	0.969216233931596	0.0282966100811786	0.969216233931596	392.597987060693	0	11.4620368186034						283	20	3	NaN	NaN	NaN	5.5123E-05	1	9991	108.3	80.567	1	67588			22571	1647	19045	19585	22571	22571		
YLNTNPVGGLLEYAR	15	Unmodified	_YLNTNPVGGLLEYAR_			0	0	0	P55265	P55265	P55265	ADAR	Double-stranded RNA-specific adenosine deaminase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	840.441212	1678.86787	2.1832	0.0018349	-0.72041	-0.00060546	1.4628	0.0012294	840.440300280271	15.73	0.26605	15.73	15.668	15.934	0	342	55	1.09598084995137	0.0360414456157032	1.09598084995137	442.580697331789	0	14.5543128186514						910	31	5	NaN	NaN	NaN	3.824E-12	1	23891	153.52	129.68	1	400620			22572	1273	19046	19586	22572	22572		
YLPDTLLLEECGLLR	15	Unmodified	_YLPDTLLLEECGLLR_			0	0	0	P21964	P21964	P21964	COMT	Catechol O-methyltransferase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.979312	1803.94407	1.1502	0.0010386	-1.2097	-0.0010923	-0.059428	-5.3662E-05	903.480084084328	18.257	0.15962	18.257	18.204	18.364	0	279	82	1.13799159301878	0.0539172985517062	1.13799159301878	459.284603691027	0	21.7606046031681						673	19	4	NaN	NaN	NaN	2.8639E-06	1	27334	92.707	85.96	1	163680			22573	797	19047	19587	22573	22573		
YLPPATQVVLISATLPHEILEMTNK	25	Unmodified	_YLPPATQVVLISATLPHEILEMTNK_			0	0	0	P38919	P38919	P38919	EIF4A3	Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	926.841856	2777.50374	1.4181	0.0013143	0.56927	0.00052762	1.9874	0.001842	927.176778065527	20.075	0.13301	20.075	20.013	20.146	0	231	106	1.16991841121525	0.0697872140049614	1.16991841121525	706.356568538187	0	42.1351237315598						810	16	6	NaN	NaN	NaN	8.9578E-07	1	37835	81.449	80.608	1	331890			22574	1008	19048	19588	22574	22574		
YLQAIMDSNAQSHK	14	Unmodified	_YLQAIMDSNAQSHK_			0	0	0	Q13614	Q13614	Q13614	MTMR2	Myotubularin-related protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	803.388122	1604.76169	2.1969	0.001765	-0.62828	-0.00050475	1.5686	0.0012602	803.889161801265	6.3387	0.06208	6.3387	6.3121	6.3742	0	294	25	1.12800004657306	0.0159919751771491	1.12800004657306	455.682900459384	0	6.46034515241098						119	8	3	NaN	NaN	NaN	0.00090743	1	21732	75.474	39.234	1	23249			22575	1693	19049	19589	22575	22575		
YLQAVGMFR	9	Unmodified	_YLQAVGMFR_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.784044	1083.55354	0.24445	0.00013269	0.47496	0.0002578	0.71941	0.00039049	542.78536839047	11.243	0.13301	11.243	11.181	11.314	0	651	34	0.888155670855968	0.022351963978809	0.888155670855968	360.264883704063	0	9.06668500536875						194	16	3	NaN	NaN	NaN	0.0003216	1	6300	81.32	49.193	1	37673			22576	793	19050	19590	22576	22576		
YLQDLLAWVEENQHR	15	Unmodified	_YLQDLLAWVEENQHR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	638.654997	1912.94316	-0.061517	-3.9288E-05	-0.22411	-0.00014313	-0.28563	-0.00018242	638.989119806496	18.08	0.097544	18.08	18.036	18.133	0	597	28	0.924688525662974	0.0182449125514795	0.924688525662974	559.550173001222	0	11.0404138163746						292	12	4	NaN	NaN	NaN	1.8839E-05	1	29907	91.939	85.912	1	99090			22577	1816	19051	19591	22577	22577		
YLQDLLAWVEENQHR	15	Unmodified	_YLQDLLAWVEENQHR_			0	0	0	Q15149	Q15149	Q15149	PLEC	Plectin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.478857	1912.94316	0.30562	0.00029263	1.7426	0.0016685	2.0482	0.0019611	957.480754432034	18.071	0.079818	18.071	18.036	18.115	0	120	31	1.2434810169581	0.019831374957614	1.2434810169581	501.641093907105	0	8.00030920597044						209	10	4	NaN	NaN	NaN	1.054E-06	1	29909	110.58	101.78	1	49429			22578	1816	19051	19591	22578	22578		
YLQDNPASGEK	11	Unmodified	_YLQDNPASGEK_			0	0	0	Q16850	Q16850	Q16850	CYP51A1	Lanosterol 14-alpha demethylase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.290942	1220.56733	1.882	0.0011504	0.24356	0.00014889	2.1255	0.0012993	611.290345183754	3.5721	0.14186	3.5721	3.4923	3.6342	0	591	28	0.928742107665821	0.0182373300269247	0.928742107665821	376.196650427862	0	7.38722021134544						175	17	2	NaN	NaN	NaN	0.061143	1	10024	28.647	13.065	1	52527			22579	1911	19052	19592	22579	22579		
YLQDSTFATSPHLESLLK	18	Unmodified	_YLQDSTFATSPHLESLLK_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1025.52821	2049.04187	1.5677	0.0016077	-0.16057	-0.00016467	1.4071	0.001443	1025.52763391186	13.832	0.070935	13.832	13.797	13.868	0	129	34	1.23753038177212	0.0218249814515028	1.23753038177212	499.001645794553	0	8.8003509442251						218	9	4	NaN	NaN	NaN	0.0029461	1	32534	45.17	40.615	1	45552			22580	2772	19053	19593	22580	22580		
YLQDSTFATSPHLESLLK	18	Unmodified	_YLQDSTFATSPHLESLLK_			0	0	0	Q9BW27	Q9BW27	Q9BW27	NUP85	Nuclear pore complex protein Nup85	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.021234	2049.04187	1.3429	0.00091856	0.18895	0.00012925	1.5318	0.0010478	684.354963901031	13.832	0.133	13.832	13.779	13.912	0	489	46	0.997481546940468	0.0302654273538991	0.997481546940468	603.310383797963	0	18.3055482567038						344	16	4	NaN	NaN	NaN	4.1817E-05	1	32535	77.696	56.335	1	97797			22581	2772	19053	19593	22581	22581		
YLQEEVNINR	10	Unmodified	_YLQEEVNINR_			0	0	0	Q9UHD8	Q9UHD8	Q9UHD8	SEPT9	Septin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.327859	1276.64116	1.3599	0.00086944	-1.3523	-0.00086458	0.0075986	4.858E-06	639.829905223723	7.0925	0.19517	7.0925	7.0569	7.2521	0	564	52	0.946969335010767	0.0343863373068095	0.946969335010767	383.391338552234	0	13.9217009469651						314	23	2	NaN	NaN	NaN	0.00022635	1	11672	105.36	76.257	1	195970			22582	3215	19054	19594	22582	22582		
YLQEFAPLGTGGGLYHFR	18	Unmodified	_YLQEFAPLGTGGGLYHFR_			0	0	0	Q96IJ6	Q96IJ6	Q96IJ6	GMPPA	Mannose-1-phosphate guanyltransferase alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	676.010892	2025.01085	0.89068	0.00060211	0.012967	8.7657E-06	0.90365	0.00061087	676.345353573983	14.631	0.070934	14.631	14.604	14.675	1.7764E-15	465	28	1.01360860968299	0.0181341741775967	1.01360860968299	613.113489471898	0	10.9690335130389						166	9	4	NaN	NaN	NaN	0.0013605	1	32061	65.173	59.474	1	37304			22583	2558	19055	19595	22583	22583		
YLQEVIDVLETDGHFR	16	Unmodified	_YLQEVIDVLETDGHFR_			0	0	0	Q02818	Q02818	Q02818	NUCB1	Nucleobindin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	645.326657	1932.95814	0.14176	9.1481E-05	-2.2353	-0.0014425	-2.0935	-0.001351	645.32440042734	17.583	0.097528	17.583	17.53	17.628	0	591	40	0.928742107665821	0.0263537653577723	0.928742107665821	561.961230979288	0	15.9460783560402						259	12	4	NaN	NaN	NaN	0.0018352	1	30383	44.045	34.302	1	62916			22584	1532	19056	19596	22584	22584		
YLQLAEELIRPER	13	Unmodified	_YLQLAEELIRPER_			0	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	543.970145	1628.88861	0.37623	0.00020466	2.8169	0.0015323	3.1931	0.001737	544.305926762416	13.496	0.22173	13.496	13.354	13.575	0	651	61	0.888155670855968	0.0406653325678452	0.888155670855968	538.116906375588	0	24.638364282529						704	26	4	NaN	NaN	NaN	0.037686	1	22450	76.85	69.293	1	241160			22585	1757	19057	19597	22585	22585		
YLQLAEELIRPER	13	Unmodified	_YLQLAEELIRPER_			0	0	1	Q14566	Q14566	Q14566	MCM6	DNA replication licensing factor MCM6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.451579	1628.88861	2.4274	0.0019794	1.1132	0.00090773	3.5406	0.0028872	815.452367846758	13.504	0.23057	13.504	13.389	13.62	0	285	37	1.13399579921816	0.0239780653182871	1.13399579921816	458.046954542329	0	9.68529142914889						665	27	4	NaN	NaN	NaN	3.6206E-06	1	22451	132.44	100.39	1	292320			22586	1757	19057	19597	22586	22586		
YLQLTQSELSSYHR	14	Unmodified	_YLQLTQSELSSYHR_			0	0	0	Q8N5M4	Q8N5M4	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	862.933751	1723.85295	2.2555	0.0019463	-2.2618	-0.0019518	-0.0063481	-5.478E-06	862.931989896679	9.177	0.044338	9.177	9.1592	9.2036	0	285	19	1.13399579921816	0.0119890311273729	1.13399579921816	457.834116299469	0	4.8403948897095						66	6	3	NaN	NaN	NaN	0.00022316	1	25161	78.864	73.476	1	9478			22587	2259	19058	19598	22587	22587		
YLQLTQSELSSYHR	14	Unmodified	_YLQLTQSELSSYHR_			0	0	0	Q8N5M4	Q8N5M4	Q8N5M4	TTC9C	Tetratricopeptide repeat protein 9C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	575.624926	1723.85295	0.17408	0.0001002	0.15705	9.0401E-05	0.33112	0.0001906	575.625025298091	9.177	0.088747	9.177	9.1415	9.2303	0	660	25	0.882057989648486	0.0162638692349029	0.882057989648486	534.174401063115	0	9.84940073042731						200	11	4	NaN	NaN	NaN	5.9807E-08	1	25162	112.93	108.94	1	50912			22588	2259	19058	19598	22588	22588		
YLQQPGCLLVGTNMDNR	17	Unmodified	_YLQQPGCLLVGTNMDNR_			0	0	0	A6NDG6	A6NDG6	A6NDG6	PGP	Phosphoglycolate phosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	989.977309	1977.94007	1.8964	0.0018774	-2.4125	-0.0023883	-0.5161	-0.00051093	990.477887293735	12.307	0.10642	12.307	12.263	12.369	0	210	91	1.18386433251387	0.059739566892506	1.18386433251387	477.477702406624	0	24.0942398205637						560	13	4	NaN	NaN	NaN	0.00017533	1	31246	59.67	56.586	1	137130			22589	12	19059	19599	22589	22589		
YLQSTQAIHDVFSQYK	16	Unmodified	_YLQSTQAIHDVFSQYK_			0	0	0	Q86TU7	Q86TU7	Q86TU7	SETD3	Histone-lysine N-methyltransferase setd3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	964.481065	1926.94758	0.46993	0.00045324	1.2144	0.0011713	1.6843	0.0016245	964.984194528603	12.041	0.06207	12.041	12.006	12.068	0	102	28	1.25537494996371	0.0178347900614335	1.25537494996371	506.412801559794	0	7.1944768377785						143	8	4	NaN	NaN	NaN	0.0018254	1	30212	51.569	37.206	1	25671			22590	2159	19060	19600	22590	22590		
YLQTIMDANAQSHK	14	Unmodified	_YLQTIMDANAQSHK_			0	0	0	Q13613	Q13613	Q13613	MTMR1	Myotubularin-related protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	810.395947	1618.77734	2.6369	0.002137	-1.51	-0.0012237	1.127	0.00091331	810.395012026987	6.7289	0.070957	6.7289	6.7023	6.7732	0	288	25	1.13199748998575	0.0159897747860325	1.13199748998575	457.263885338018	0	6.45897770005922						69	9	2	NaN	NaN	NaN	0.0018831	1	22150	54.199	47.452	1	15199			22591	1692	19061	19601	22591	22591		
YLSEVASGDNK	11	Unmodified	_YLSEVASGDNK_			0	0	0	P31946	P31946	P31946	YWHAB	14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	591.785492	1181.55643	2.2611	0.0013381	0.64998	0.00038465	2.9111	0.0017227	591.786145849578	4.1219	0.31923	4.1219	3.9888	4.3081	0	621	58	0.908462957275599	0.0385544403778527	0.908462957275599	368.118185952003	0	15.6226410098791						882	37	5	NaN	NaN	NaN	8.2606E-08	1	8911	142.56	108.75	1	983690			22592	932	19062	19602	22592	22592		
YLSFHFK	7	Unmodified	_YLSFHFK_			0	0	0	P53004	P53004	P53004	BLVRA	Biliverdin reductase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	471.247621	940.480688	-0.57895	-0.00027283	1.1004	0.00051854	0.52141	0.00024571	471.247718073076	8.8399	0.16865	8.8399	8.7955	8.9642	0	723	34	0.839303037468863	0.022429693259391	0.839303037468863	341.098085917816	0	9.11556982037717						264	20	3	NaN	NaN	NaN	0.026348	1	3071	58.687	40.992	1	67570			22593	1228	19063	19603	22593	22593		
YLSGIAHFLEK	11	Unmodified	_YLSGIAHFLEK_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	426.567801	1276.68157	-2.3534	-0.0010039	-0.30155	-0.00012863	-2.6549	-0.0011325	426.567680791391	12.086	0.088686	12.086	12.05	12.139	0	774	19	0.804600385996946	0.0122624806871617	0.804600385996946	488.623174375037	0	7.44684236218632						134	11	3	NaN	NaN	NaN	0.057216	1	11678	19.324	15.121	1	28034			22594	1590	19064	19604	22594	22594		
YLSGIAHFLEK	11	Unmodified	_YLSGIAHFLEK_			0	0	0	Q10713	Q10713	Q10713	PMPCA	Mitochondrial-processing peptidase subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	639.348063	1276.68157	1.0509	0.00067192	0.81685	0.00052225	1.8678	0.0011942	639.348420655816	12.086	0.12415	12.086	12.041	12.165	0	444	31	1.02770517576159	0.0201310011285361	1.02770517576159	416.078014116639	0	8.15026251622595						276	15	4	NaN	NaN	NaN	1.899E-11	1	11682	121.8	92.487	1	98679			22595	1590	19064	19604	22595	22595		
YLSHSEFK	8	Unmodified	_YLSHSEFK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	337.502908	1009.4869	-1.2149	-0.00041003	2.161	0.00072935	0.9461	0.00031931	337.50377315905	3.1286	0.088652	3.1286	3.102	3.1907	0	870	19	0.739054571787983	0.0123172617598566	0.739054571787983	450.084856424398	0	7.50122278157983						88	11	2	NaN	NaN	NaN	0.062129	1	4494	8.1826	1.4202	1	18200			22596	2420	19065	19605	22596	22596		
YLSHSEFK	8	Unmodified	_YLSHSEFK_			0	0	0	Q92616	Q92616	Q92616	GCN1L1	Translational activator GCN1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.750724	1009.4869	1.1249	0.00056891	1.3107	0.0006629	2.4356	0.0012318	505.751014659756	3.1286	0.1419	3.1286	3.0932	3.2351	0	675	22	0.871889544407995	0.0142377998376291	0.871889544407995	353.992393605424	0	5.78063227907995						173	17	3	NaN	NaN	NaN	0.0079735	1	4495	72.492	51.834	1	39856			22597	2420	19065	19605	22597	22597		
YLTAEAFGFK	10	Unmodified	_YLTAEAFGFK_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	573.795132	1145.57571	0.27486	0.00015771	-0.14597	-8.3759E-05	0.12888	7.3953E-05	573.795083198212	13.034	0.31923	13.034	12.919	13.238	0	630	76	0.902373728295776	0.0507154792608258	0.902373728295776	365.783284776009	0	20.5578620158297						1024	37	5	NaN	NaN	NaN	4.3418E-05	1	7942	72.038	52.551	1	723340			22598	1898	19066	19606	22598	22598		
YLTEHPDPNNENIVGYNNK	19	Unmodified	_YLTEHPDPNNENIVGYNNK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1116.02181	2230.02907	2.3395	0.0026109	-0.44944	-0.00050159	1.89	0.0021093	1116.5226396217	7.3851	0.053189	7.3851	7.3674	7.4205	0	156	43	1.21966378336455	0.0278096485881287	1.21966378336455	491.528679325584	0	11.207383567071						140	7	3	NaN	NaN	NaN	0.0009355	1	34983	28.277	27.842	1	19761			22599	2064	19067	19607	22599	22599		
YLTEHPDPNNENIVGYNNK	19	Unmodified	_YLTEHPDPNNENIVGYNNK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	744.350301	2230.02907	0.92939	0.0006918	1.1885	0.00088462	2.1178	0.0015764	744.685625806718	7.3851	0.14185	7.3851	7.3319	7.4738	0	633	46	0.900343422309015	0.0304588219189615	0.900343422309015	544.260694255075	0	18.4124625704391						529	17	4	NaN	NaN	NaN	7.4194E-11	1	34984	124.24	119.42	1	165680			22600	2064	19067	19607	22600	22600		
YLTESYGTGQDIDDR	15	Unmodified	_YLTESYGTGQDIDDR_			0	0	0	Q9UM54	Q9UM54	Q9UM54	MYO6	Unconventional myosin-VI	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	866.886663	1731.75877	2.4514	0.0021251	-0.36448	-0.00031596	2.087	0.0018092	866.887142052041	7.5181	0.14186	7.5181	7.4738	7.6156	0	354	37	1.08796502040166	0.0240541201161169	1.08796502040166	439.233864116073	0	9.71114321544422						301	17	4	NaN	NaN	NaN	1.0556E-11	1	25369	115.35	109.96	1	70846			22601	3286	19068	19608	22601	22601		
YLTPQLPPVPIIPEHK	16	Unmodified	_YLTPQLPPVPIIPEHK_			0	0	0	Q13887	Q13887	Q13887	KLF5	Krueppel-like factor 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.688979	1841.04511	-2.1089	-0.0012963	0.19612	0.00012056	-1.9128	-0.0011757	615.023410553961	14.852	0.14189	14.852	14.799	14.941	0	738	19	0.829104889055312	0.0122420319698213	0.829104889055312	501.851248485953	0	7.41001423240908						177	17	3	NaN	NaN	NaN	0.01109	1	28270	44.045	43.893	1	36340			22602	1708	19069	19609	22602	22602		
YLTTAVITNK	10	Unmodified	_YLTTAVITNK_			0	0	0	P60228	P60228	P60228	EIF3E	Eukaryotic translation initiation factor 3 subunit E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	562.321514	1122.62847	0.88288	0.00049646	1.4398	0.00080966	2.3227	0.0013061	562.322313907321	7.5447	0.16844	7.5447	7.5092	7.6777	0	609	37	0.916577990479294	0.0243349817538098	0.916577990479294	371.631383059503	0	9.86674676877965						430	20	4	NaN	NaN	NaN	0.0045073	1	7347	65.404	45.917	1	185600			22603	1304	19070	19610	22603	22603		
YLTVAAVFR	9	Unmodified	_YLTVAAVFR_			0	0	0	P04350;P07437;P68371	P04350;P07437;P68371	P68371	TUBB4A;TUBB;TUBB4B	Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-4B chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	520.300384	1038.58622	0.70205	0.00036528	-1.4623	-0.00076081	-0.7602	-0.00039553	520.299641711466	13.371	0.23945	13.371	13.274	13.513	0	681	142	0.867820189810857	0.0955305918246896	0.867820189810857	352.207439507114	0	38.7713786060987						2180	28	4	NaN	NaN	NaN	7.9167E-07	1	5202	134.85	117.16	1	1989600			22604	1449;560;512	19071	19611	22604	22604		
YLVELGCIK	9	Unmodified	_YLVELGCIK_			0	0	0	P52294	P52294	P52294	KPNA1	Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.79936	1093.58417	-0.64862	-0.00035531	-1.048	-0.00057407	-1.6966	-0.00092939	547.79894848757	11.899	0.13302	11.899	11.837	11.97	0	639	28	0.896281965493857	0.0182752899876304	0.896281965493857	363.519311505104	0	7.4121996086343						208	16	2	NaN	NaN	NaN	0.019223	1	6549	56.014	26.913	1	72338			22605	1208	19072	19612	22605	22605		
YLVGGLSGVDEGLSSTENLK	20	Unmodified	_YLVGGLSGVDEGLSSTENLK_			0	0	0	Q9NXF1	Q9NXF1	Q9NXF1	TEX10	Testis-expressed sequence 10 protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1019.52058	2037.02662	0.89996	0.00091753	0.44587	0.00045457	1.3458	0.0013721	1019.52117099172	14.001	0.088662	14.001	13.966	14.054	0	123	40	1.24149774378079	0.0257931613515507	1.24149774378079	500.621251057127	0	10.4008281684092						245	11	4	NaN	NaN	NaN	1.1385E-10	1	32294	111.38	100.17	1	54532			22606	3102	19073	19613	22606	22606		
YLVIDEAHR	9	Unmodified	_YLVIDEAHR_			0	0	0	O60264;P28370	O60264	O60264	SMARCA5;SMARCA1	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5;Probable global transcription activator SNF2L1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.29583	1114.57711	1.5159	0.00084633	1.331	0.00074307	2.8469	0.0015894	558.296697364814	6.0638	0.15075	6.0638	6.0017	6.1525	0	618	37	0.910492137470517	0.0243484786239944	0.910492137470517	369.196187598354	0	9.87308413971869						322	18	4	NaN	NaN	NaN	0.0002714	1	7116	98.009	53.242	1	112990			22607	251	19074	19614	22607	22607		
YLVLDEADR	9	Unmodified	_YLVLDEADR_			0	0	0	O00571;O15523;Q9NQI0	O00571	O00571	DDX3X;DDX3Y;DDX4	ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y;Probable ATP-dependent RNA helicase DDX4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	547.279846	1092.54514	0.65432	0.0003581	1.3785	0.0007544	2.0328	0.0011125	547.280695346601	8.7245	0.27521	8.7245	8.6623	8.9375	0	624	40	0.906433495720521	0.0263903231913262	0.906433495720521	367.640968062238	0	10.7036688420503						604	32	4	NaN	NaN	NaN	0.00010984	1	6526	117.39	89.651	1	357320			22608	93	19075	19615	22608	22608		
YLVQDTDEFILPTGANK	17	Unmodified	_YLVQDTDEFILPTGANK_			0	0	0	Q5SRD1;O14925	Q5SRD1	Q5SRD1	TIMM23B;TIMM23	Putative mitochondrial import inner membrane translocase subunit Tim23B;Mitochondrial import inner membrane translocase subunit Tim23	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	962.488556	1922.96256	2.3051	0.0022186	-0.17426	-0.00016772	2.1308	0.0020509	962.488867103186	14.498	0.20394	14.498	14.444	14.648	0	210	64	1.18386433251387	0.0418377832403103	1.18386433251387	477.57280982173	0	16.8774302511166						1169	24	7	NaN	NaN	NaN	7.1066E-14	1	30123	146.37	130.08	1	408840			22609	125	19076	19616	22609	22609		
YLVSLGCIK	9	Unmodified	_YLVSLGCIK_			0	0	0	O60684	O60684	O60684	KPNA6	Importin subunit alpha-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	526.794078	1051.5736	-0.24262	-0.00012781	-4.1238	-0.0021724	-4.3664	-0.0023002	526.792273681875	11.642	0.15969	11.642	11.562	11.722	0	666	40	0.877991458330206	0.0264269571469923	0.877991458330206	356.277913242708	0	10.7237274991164						418	19	3	NaN	NaN	NaN	0.0094958	1	5514	39.324	23.826	1	158140			22610	274	19077	19617	22610	22610		
YLVVYNPLEQDR	12	Unmodified	_YLVVYNPLEQDR_			0	0	0	Q16706	Q16706	Q16706	MAN2A1	Alpha-mannosidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	754.890823	1507.76709	1.9038	0.0014372	-2.7096	-0.0020455	-0.80579	-0.00060829	754.888570637359	13.806	0.18618	13.806	13.735	13.921	0	420	46	1.04379886199097	0.0301569310517751	1.04379886199097	421.899841180575	0	12.1893258218053						589	22	5	NaN	NaN	NaN	0.029937	1	18731	49.16	39.072	1	232450			22611	1901	19078	19618	22611	22611		
YLYHGNTNPELAFESAK	17	Unmodified	_YLYHGNTNPELAFESAK_			0	0	0	Q92621	Q92621	Q92621	NUP205	Nuclear pore complex protein Nup205	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	977.470697	1952.92684	2.0418	0.0019958	-1.4826	-0.0014492	0.55916	0.00054656	977.468752079322	9.5938	0.10639	9.5938	9.5406	9.647	0	219	46	1.17788915118882	0.0298882290597779	1.17788915118882	475.110180048901	0	12.0556351806127						279	13	3	NaN	NaN	NaN	0.0039157	1	30766	28.277	25.888	1	62401			22612	2422	19079	19619	22612	22612		
YLYSSEDYIK	10	Unmodified	_YLYSSEDYIK_			0	0	0	Q13200	Q13200	Q13200	PSMD2	26S proteasome non-ATPase regulatory subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	640.805894	1279.59723	1.6226	0.0010398	0.61348	0.00039312	2.2361	0.0014329	640.806259901805	8.9464	0.15091	8.9464	8.8931	9.044	0	501	43	0.98941132619024	0.0282574968538493	0.98941132619024	400.564550291012	0	11.4400868678104						478	18	3	NaN	NaN	NaN	6.2489E-05	1	11738	96.311	72.736	1	398760			22613	1642	19080	19620	22613	22613		
YMAEALLLR	9	Unmodified	_YMAEALLLR_			0	0	0	O94826	O94826	O94826	TOMM70A	Mitochondrial import receptor subunit TOM70	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	540.299527	1078.5845	1.2099	0.00065373	-4.0807	-0.0022048	-2.8708	-0.0015511	540.298580931996	12.83	0.16848	12.83	12.768	12.937	0	639	46	0.896281965493857	0.0304630467152948	0.896281965493857	363.58222197863	0	12.35751988704						454	20	4	NaN	NaN	NaN	0.0014803	1	6181	62.88	51.231	1	151330			22614	389	19081	19621	22614	22614		
YMDLLWR	7	Unmodified	_YMDLLWR_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	498.752213	995.489873	-0.85597	-0.00042692	-1.5651	-0.00078061	-2.4211	-0.0012075	498.751283767024	14.329	0.18619	14.329	14.276	14.462	0	738	34	0.829104889055312	0.0224421675628655	0.829104889055312	336.685219127985	0	9.11337781667117						388	22	4	NaN	NaN	NaN	0.0087429	1	4173	80.294	69.466	1	170750			22615	352	19082	19622	22615	22615		
YMDVQFDFK	9	Unmodified	_YMDVQFDFK_			0	0	0	O00159	O00159	O00159	MYO1C	Unconventional myosin-Ic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.7708	1191.52705	0.020443	1.22E-05	0.56657	0.00033811	0.58701	0.00035031	596.771003359407	13.114	0.079786	13.114	13.07	13.15	0	591	31	0.928742107665821	0.0202707209833614	0.928742107665821	376.299152372808	0	8.21310357424778						134	10	2	NaN	NaN	NaN	0.008805	1	9199	52.591	19.165	1	28531			22616	54	19083	19623	22616	22616		
YMEDMEQAFETCQAAER	17	Unmodified	_YMEDMEQAFETCQAAER_			0	0	0	Q9UKS6	Q9UKS6	Q9UKS6	PACSIN3	Protein kinase C and casein kinase substrate in neurons protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.92154	2107.82853	1.9966	0.0021062	-0.076185	-8.0369E-05	1.9204	0.0020259	1055.42373212872	12.157	0.079837	12.157	12.112	12.192	0	219	43	1.17788915118882	0.0278899316953802	1.17788915118882	474.86372124607	0	11.2437717393017						341	10	4	NaN	NaN	NaN	2.4606E-10	1	33430	95.345	95.194	1	72260			22617	3268	19084	19624	22617	22617		
YMEENDQLK	9	Unmodified	_YMEENDQLK_			0	0	0	P51572	P51572	P51572	BCAP31	B-cell receptor-associated protein 31	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	585.260796	1168.50704	2.1725	0.0012715	-0.1355	-7.9305E-05	2.037	0.0011922	585.26065503898	4.2283	0.23942	4.2283	4.1839	4.4233	0	597	97	0.924688525662974	0.0649383475801635	0.924688525662974	374.741238489607	0	26.3170528478349						668	28	4	NaN	NaN	NaN	0.001223	1	8559	72.038	53.636	1	299850			22618	1191	19085	19625	22618	22618		
YMHSGPVVAMVWEGLNVVK	19	Unmodified	_YMHSGPVVAMVWEGLNVVK_			0	0	0	P15531	P15531	P15531	NME1	Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	706.028789	2115.06454	0.32261	0.00022777	-0.91192	-0.00064384	-0.58931	-0.00041607	706.362692483416	18.124	0.34582	18.124	17.92	18.266	0	597	49	0.924688525662974	0.0324421500815294	0.924688525662974	559.165316651964	0	19.6179844561201						1695	40	6	NaN	NaN	NaN	3.209E-05	1	33546	55.782	54.766	1	636030			22619	714	19086	19626	22619	22619		
YMHSGPVVAMVWEGLNVVK	19	Oxidation (M)	_YM(Oxidation (M))HSGPVVAMVWEGLNVVK_	YM(0.999)HSGPVVAM(0.001)VWEGLNVVK	YM(32)HSGPVVAM(-32)VWEGLNVVK	0	1	0	P15531	P15531	P15531	NME1	Nucleoside diphosphate kinase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	711.360427	2131.05945	0.27335	0.00019445	-1.0327	-0.00073461	-0.75934	-0.00054016	711.694221019675	17.158	0.23941	17.158	17.025	17.264	0	582	52	0.934820374997243	0.0344435264465663	0.934820374997243	565.26446102952	0	20.8272112306407						847	28	4	NaN	NaN	NaN	0.00067234	1	33761	61.067	59.698	2	190760			22620	714	19086	19627	22620	22620	240	
YMIGVTYGGDDIPLSPYR	18	Unmodified	_YMIGVTYGGDDIPLSPYR_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1008.99041	2015.96626	1.8166	0.001833	-1.3617	-0.0013739	0.45495	0.00045904	1009.49169206385	15.597	0.20395	15.597	15.491	15.695	0	180	64	1.203763835057	0.0417688982610558	1.203763835057	485.439770673209	0	16.8440717378417						859	24	4	NaN	NaN	NaN	5.8949E-07	1	31909	102.57	94.991	1	237730			22621	326	19087	19628	22621	22621		
YMLPLDNLK	9	Unmodified	_YMLPLDNLK_			0	0	0	P50570;Q9UQ16	P50570	P50570	DNM2;DNM3	Dynamin-2;Dynamin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	553.79936	1105.58417	0.32125	0.00017791	0.28175	0.00015603	0.603	0.00033394	553.799791024742	13.247	0.10641	13.247	13.194	13.3	0	606	49	0.918606045818476	0.0324556427464261	0.918606045818476	372.523314946503	0	13.1617723175831						380	13	4	NaN	NaN	NaN	0.048758	1	6871	36.211	22.563	1	117530			22622	1167	19088	19629	22622	22622		
YMNSGPVVAMVWEGLNVVK	19	Unmodified	_YMNSGPVVAMVWEGLNVVK_			0	0	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	698.356794	2092.04855	0.65346	0.00045635	-0.39101	-0.00027307	0.26245	0.00018328	698.691095504028	20.022	0.12417	20.022	19.96	20.084	0	447	40	1.02569221487577	0.0261757253352226	1.02569221487577	620.287388437881	0	15.8297704449468						343	15	6	NaN	NaN	NaN	1.2614E-05	1	33219	103.23	97.203	1	142010			22623	805	19089	19630	22623	22623		
YMNSGPVVAMVWEGLNVVK	19	Unmodified	_YMNSGPVVAMVWEGLNVVK_			0	0	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.03155	2092.04855	1.5019	0.0015725	-1.0425	-0.0010916	0.45934	0.00048094	1047.53277302294	20.022	0.1862	20.022	19.942	20.128	0	150	82	1.22363604450103	0.0535924865857382	1.22363604450103	493.330850028433	0	21.606773583775						727	22	6	NaN	NaN	NaN	1.4067E-15	1	33220	159.83	150.67	1	250810			22624	805	19089	19630	22624	22624		
YMNSGPVVAMVWEGLNVVK	19	Oxidation (M)	_YM(Oxidation (M))NSGPVVAMVWEGLNVVK_	YM(0.999)NSGPVVAM(0.001)VWEGLNVVK	YM(31)NSGPVVAM(-31)VWEGLNVVK	0	1	0	P22392;O60361	P22392	P22392	NME2;NME2P1	Nucleoside diphosphate kinase B;Putative nucleoside diphosphate kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	703.688432	2108.04347	0.84002	0.00059111	0.49028	0.00034501	1.3303	0.00093612	704.023276418077	19.694	0.11528	19.694	19.632	19.747	0	438	28	1.03173026378327	0.0181116473716121	1.03173026378327	623.907705998633	0	10.9524715520532						195	14	3	NaN	NaN	NaN	0.059047	1	33441	43.518	41.129	2	38621			22625	805	19089	19631	22625	22625	270	
YMPQNPCIIATK	12	Unmodified	_YMPQNPCIIATK_			0	0	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	718.357247	1434.69994	2.209	0.0015869	-1.386	-0.00099561	0.82307	0.00059126	718.357610187544	8.4938	0.34605	8.4938	8.343	8.6891	0	468	112	1.01159370163332	0.074479674201326	1.01159370163332	409.071983114572	0	30.1183646933255						1746	40	4	NaN	NaN	NaN	0.0043952	1	16530	74.849	65.587	1	685130			22626	1582	19090	19632	22626	22626		
YMPQNPCIIATK	12	Oxidation (M)	_YM(Oxidation (M))PQNPCIIATK_	YM(1)PQNPCIIATK	YM(42)PQNPCIIATK	0	1	0	Q09028	Q09028	Q09028	RBBP4	Histone-binding protein RBBP4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.354705	1450.69486	1.5872	0.0011529	2.4077	0.0017488	3.9949	0.0029017	726.357826776272	7.0126	0.26607	7.0126	6.8885	7.1545	0	477	94	1.0055473068722	0.0624104766690106	1.0055473068722	406.584089603072	0	25.235119884209						574	31	4	NaN	NaN	NaN	0.029784	1	17000	41.824	39.153	1	120740			22627	1582	19090	19633	22627	22627	550	
YMSPEQISSQDYGK	14	Unmodified	_YMSPEQISSQDYGK_			0	0	0	P19525	P19525	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	816.864145	1631.71374	2.6671	0.0021787	-1.2161	-0.00099338	1.451	0.0011853	817.364343047124	7.8197	0.19512	7.8197	7.7044	7.8995	0	402	46	1.05585747106793	0.0301361332726353	1.05585747106793	426.478870138097	0	12.1724990546737						680	23	4	NaN	NaN	NaN	0.00026477	1	22534	72.846	56.967	1	162520			22628	770	19091	19634	22628	22628		
YMTDGMLLR	9	Unmodified	_YMTDGMLLR_			0	0	0	O43143;O60231;Q14562	O43143;O60231;Q14562	O43143	DHX15;DHX16;DHX8	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15;Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16;ATP-dependent RNA helicase DHX8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	550.26737	1098.52019	0.68302	0.00037584	0.90467	0.00049781	1.5877	0.00087365	550.267313273599	10.729	0.15961	10.729	10.64	10.8	0	633	40	0.900343422309015	0.0263976438859336	0.900343422309015	365.146155002759	0	10.7059127964312						475	19	5	NaN	NaN	NaN	0.0051906	1	6663	85.813	82.354	1	244030			22629	181;248;1756	19092	19635	22629	22629		
YMTISDEWDIPEK	13	Unmodified	_YMTISDEWDIPEK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	813.871439	1625.72832	2.1503	0.0017501	0.83166	0.00067686	2.982	0.002427	813.872222436912	13.584	0.36353	13.584	13.469	13.832	0	381	61	1.06991323971056	0.0401510490919958	1.06991323971056	432.16962187637	0	16.2181970088728						1044	42	4	NaN	NaN	NaN	1.1579E-07	1	22349	136.94	119.21	1	276010			22630	1280	19093	19636	22630	22630		
YMTISGFQIEETIDR	15	Unmodified	_YMTISGFQIEETIDR_			0	0	0	P08758	P08758	P08758	ANXA5	Annexin A5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	901.935102	1801.85565	2.2291	0.0020105	0.75869	0.00068429	2.9878	0.0026948	902.436560248138	15.526	0.17735	15.526	15.464	15.642	0	279	49	1.13799159301878	0.0319751569617757	1.13799159301878	459.28865781044	0	12.9050399092093						483	21	6	NaN	NaN	NaN	2.1015E-07	1	27256	126.21	115.24	1	190640			22631	591	19094	19637	22631	22631		
YMTQFADQNFSDFLFR	16	Unmodified	_YMTQFADQNFSDFLFR_			0	0	0	Q8WUM0	Q8WUM0	Q8WUM0	NUP133	Nuclear pore complex protein Nup133	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1015.45928	2028.904	0.70924	0.00072021	1.3562	0.0013772	2.0655	0.0020974	1015.96168686474	18.878	0.062054	18.878	18.851	18.914	0	186	31	1.1997861197946	0.0198913087124573	1.1997861197946	483.814574237726	0	8.02118385683292						169	8	4	NaN	NaN	NaN	1.6666E-08	1	32127	111.38	109.4	1	35442			22632	2369	19095	19638	22632	22632		
YMVENHGEDYK	11	Unmodified	_YMVENHGEDYK_			0	0	0	Q9Y3C1	Q9Y3C1	Q9Y3C1	NOP16	Nucleolar protein 16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	692.795534	1383.57652	2.1999	0.0015241	-0.1649	-0.00011424	2.035	0.0014098	692.795360734857	3.5721	0.15959	3.5721	3.5366	3.6962	0	516	28	0.979317271586824	0.0181743257356556	0.979317271586824	396.15961947556	0	7.35199324729138						255	19	4	NaN	NaN	NaN	0.0057931	1	14928	64.064	58.198	1	67708			22633	3383	19096	19639	22633	22633		
YMWDSQSGR	9	Unmodified	_YMWDSQSGR_			0	0	0	Q9UKD2	Q9UKD2	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	565.240198	1128.46584	0.85354	0.00048246	1.1876	0.00067126	2.0411	0.0011537	565.240896872416	6.9771	0.12411	6.9771	6.9328	7.0569	0	639	28	0.896281965493857	0.0182803602689122	0.896281965493857	363.37945080597	0	7.41140347657489						232	15	3	NaN	NaN	NaN	0.011181	1	7476	43.734	34.971	1	59434			22634	3260	19097	19640	22634	22634		
YNDFLHDPLSLCK	13	Unmodified	_YNDFLHDPLSLCK_			0	0	0	Q8NHP8	Q8NHP8	Q8NHP8	PLBD2	Putative phospholipase B-like 2;Putative phospholipase B-like 2 32 kDa form;Putative phospholipase B-like 2 45 kDa form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	541.260819	1620.76063	-1.8891	-0.0010225	0.37718	0.00020416	-1.5119	-0.00081832	541.595525162199	13.194	0.079827	13.194	13.167	13.247	0	807	19	0.782101955086014	0.0122812703870125	0.782101955086014	473.880968138619	0	7.4413064219097						124	10	3	NaN	NaN	NaN	0.0021651	1	22210	35.845	35.555	1	24538			22635	2324	19098	19641	22635	22635		
YNDIDLTIDK	10	Unmodified	_YNDIDLTIDK_			0	0	0	P48506	P48506	P48506	GCLC	Glutamate--cysteine ligase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	605.303518	1208.59248	0.90424	0.00054734	-0.35807	-0.00021674	0.54618	0.0003306	605.303933643993	9.5938	0.23933	9.5938	9.4874	9.7268	0	576	70	0.938871150116794	0.0465742659792091	0.938871150116794	380.341656624574	0	18.8674808853189						535	28	3	NaN	NaN	NaN	0.0010791	1	9695	72.042	57.506	1	136680			22636	1108	19099	19642	22636	22636		
YNDPIYVK	8	Unmodified	_YNDPIYVK_			0	0	0	P63010;Q10567	P63010;Q10567	P63010	AP2B1;AP1B1	AP-2 complex subunit beta;AP-1 complex subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	506.260925	1010.5073	0.36238	0.00018346	0.73523	0.00037222	1.0976	0.00055567	506.261509199845	6.5781	0.20394	6.5781	6.5161	6.72	0	684	52	0.86578508874114	0.0346063393446338	0.86578508874114	351.509177373787	0	14.0501910152294						598	24	4	NaN	NaN	NaN	0.0065297	1	4517	72.492	63.729	1	227250			22637	1423;1587	19100	19643	22637	22637		
YNDTFWK	7	Unmodified	_YNDTFWK_			0	0	0	P14625;Q58FF3	P14625	P14625	HSP90B1;HSP90B2P	Endoplasmin;Putative endoplasmin-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	487.224342	972.434132	-0.2974	-0.0001449	-0.53856	-0.0002624	-0.83597	-0.0004073	487.224124271184	8.618	0.40826	8.618	8.5559	8.9642	0	759	46	0.814815566123307	0.0306327620085797	0.814815566123307	330.989476086315	0	12.4434562492909						862	47	4	NaN	NaN	NaN	0.0079642	1	3678	96.51	82.862	1	678050			22638	700	19101	19644	22638	22638		
YNEDLELEDAIHTAILTLK	19	Unmodified	_YNEDLELEDAIHTAILTLK_			0	0	0	P25787	P25787	P25787	PSMA2	Proteasome subunit alpha type-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	734.38272	2200.12633	0.58442	0.00042918	-0.84052	-0.00061726	-0.2561	-0.00018808	734.716526668445	19.774	0.062073	19.774	19.747	19.809	0	537	67	0.965173861991602	0.0444538139384744	0.965173861991602	583.499979528074	0	26.8747430328468						352	8	5	NaN	NaN	NaN	9.2026E-20	1	34680	133.93	110	1	86713			22639	842	19102	19645	22639	22639		
YNEQHVPGSPFTAR	14	Unmodified	_YNEQHVPGSPFTAR_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	534.926828	1601.75865	-0.89302	-0.0004777	-0.38618	-0.00020658	-1.2792	-0.00068428	534.926287660054	6.4274	0.12412	6.4274	6.3742	6.4983	0	807	43	0.782101955086014	0.0286483242431282	0.782101955086014	473.928549642925	0	17.3599601304574						351	15	4	NaN	NaN	NaN	0.0016504	1	21630	65.408	59.38	1	99479			22640	792	19103	19646	22640	22640		
YNFFTGCPK	9	Unmodified	_YNFFTGCPK_			0	0	0	Q99832	Q99832	Q99832	CCT7	T-complex protein 1 subunit eta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.257859	1132.50117	1.2781	0.00072503	-0.327	-0.00018549	0.95113	0.00053953	567.257857891634	9.6736	0.266	9.6736	9.6026	9.8686	0	639	52	0.896281965493857	0.034524788934056	0.896281965493857	363.363830311703	0	13.9967778341599						939	31	5	NaN	NaN	NaN	8.3781E-06	1	7592	110.22	90.731	1	666210			22641	2679	19104	19647	22641	22641		
YNFHGTAEQDLPFCK	15	Unmodified	_YNFHGTAEQDLPFCK_			0	0	0	P41240	P41240	P41240	CSK	Tyrosine-protein kinase CSK	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	609.610399	1825.80937	-0.54468	-0.00033205	0.60786	0.00037056	0.063177	3.8513E-05	609.944988458116	9.9218	0.088602	9.9218	9.8776	9.9662	0	717	37	0.84338031290707	0.0244602575158872	0.84338031290707	510.523876939471	0	14.806541375035						290	11	4	NaN	NaN	NaN	0.0010923	1	27868	65.408	62.323	1	59345			22642	1034	19105	19648	22642	22642		
YNFLPEALDFVGVHQER	17	Unmodified	_YNFLPEALDFVGVHQER_			0	0	0	Q5SRE5	Q5SRE5	Q5SRE5	NUP188	Nucleoporin NUP188 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	678.674168	2033.00068	0.26209	0.00017788	-0.67218	-0.00045619	-0.41008	-0.00027831	679.008183521187	17.566	0.10639	17.566	17.53	17.637	0	546	40	0.959108205975751	0.0262845144362098	0.959108205975751	580.131675434131	0	15.8986017457102						306	13	4	NaN	NaN	NaN	0.0012294	1	32205	54.309	54.309	1	65028			22643	1979	19106	19649	22643	22643		
YNFPNPNPFVEDDMDK	16	Unmodified	_YNFPNPNPFVEDDMDK_			0	0	0	O15371	O15371	O15371	EIF3D	Eukaryotic translation initiation factor 3 subunit D	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	971.419816	1940.82508	2.5256	0.0024534	-0.18467	-0.00017939	2.341	0.002274	971.921032675754	14.471	0.20393	14.471	14.409	14.613	0	234	52	1.16792504164217	0.0339059282789234	1.16792504164217	471.111806168537	0	13.676805053212						701	24	4	NaN	NaN	NaN	0.00096255	1	30521	84.102	81.652	1	194930			22644	168	19107	19650	22644	22644		
YNFPVEVEVPMER	13	Unmodified	_YNFPVEVEVPMER_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.889966	1607.76538	1.5304	0.0012318	0.68357	0.0005502	2.214	0.001782	804.891047364394	14.914	0.23056	14.914	14.817	15.047	-1.7764E-15	405	67	1.05384839605172	0.0441844358674923	1.05384839605172	425.720736942048	0	17.8490859495073						723	27	4	NaN	NaN	NaN	4.0039E-11	1	21846	148.76	117.33	1	219940			22645	1465	19108	19651	22645	22645		
YNHIDESEMK	10	Unmodified	_YNHIDESEMK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	422.52041	1264.5394	-0.056164	-2.373E-05	0.19041	8.045E-05	0.13424	5.672E-05	422.520568174212	3.3681	0.12424	3.3681	3.3415	3.4657	0	894	31	0.722622390967862	0.0205516922438366	0.722622390967862	438.884042549204	0	12.4820513257571						263	15	3	NaN	NaN	NaN	0.0038726	1	11342	52.591	44.944	1	73378			22646	2415	19109	19652	22646	22646		
YNHIDESEMK	10	Unmodified	_YNHIDESEMK_			0	0	0	Q92598	Q92598	Q92598	HSPH1	Heat shock protein 105 kDa	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	633.276977	1264.5394	2.322	0.0014705	-1.0988	-0.00069586	1.2232	0.0007746	633.276648100543	3.3681	0.26611	3.3681	3.3326	3.5987	0	558	43	0.951016745717027	0.0283318814612601	0.951016745717027	385.06941163979	0	11.4716601721983						479	31	5	NaN	NaN	NaN	1.6572E-07	1	11343	141.29	130.59	1	166260			22647	2415	19109	19652	22647	22647		
YNHMLSATVK	10	Unmodified	_YNHMLSATVK_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	582.297516	1162.58048	1.5552	0.00090557	-0.55561	-0.00032353	0.99955	0.00058204	582.297420243246	4.2194	0.088657	4.2194	4.1928	4.2815	0	606	25	0.918606045818476	0.0162255683873757	0.918606045818476	372.29838098325	0	6.57599943811681						151	11	3	NaN	NaN	NaN	0.012761	1	8410	53.517	38.018	1	32633			22648	1794	19110	19653	22648	22648		
YNIELDPR	8	Unmodified	_YNIELDPR_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	510.261456	1018.50836	0.27479	0.00014021	-0.039986	-2.0403E-05	0.2348	0.00011981	510.261791481819	8.4584	0.15962	8.4584	8.3697	8.5293	0	657	40	0.884090832094921	0.026423290319909	0.884090832094921	358.903438520449	0	10.7267369014197						292	19	3	NaN	NaN	NaN	0.055936	1	4704	39.324	33.094	1	62058			22649	1450	19111	19654	22649	22649		
YNIEVVCEYIVK	12	Unmodified	_YNIEVVCEYIVK_			0	0	0	P41091;Q2VIR3	P41091	P41091	EIF2S3;EIF2S3L	Eukaryotic translation initiation factor 2 subunit 3;Putative eukaryotic translation initiation factor 2 subunit 3-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	764.889435	1527.76432	1.7779	0.0013599	-0.66542	-0.00050897	1.1125	0.00085096	764.887998612292	14.586	0.22168	14.586	14.489	14.71	0	402	73	1.05585747106793	0.0481746253891453	1.05585747106793	426.723064532663	0	19.4696958084473						732	26	4	NaN	NaN	NaN	0.00040648	1	19354	79.311	66.715	1	181540			22650	1027	19112	19655	22650	22650		
YNILGTNTIMDK	12	Unmodified	_YNILGTNTIMDK_			0	0	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	691.852852	1381.69115	1.3566	0.00093854	1.2537	0.00086739	2.6103	0.0018059	691.854109999589	12.103	0.37246	12.103	12.006	12.378	0	477	67	1.0055473068722	0.0443678361345767	1.0055473068722	406.775845286382	0	17.9481998746618						1435	43	6	NaN	NaN	NaN	4.4136E-05	1	14880	123.42	81.624	1	1558000			22651	1509	19113	19656	22651	22651		
YNILGTNTIMDK	12	Oxidation (M)	_YNILGTNTIM(Oxidation (M))DK_	YNILGTNTIM(1)DK	YNILGTNTIM(86)DK	0	1	0	Q00839	Q00839	Q00839	HNRNPU	Heterogeneous nuclear ribonucleoprotein U	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.850309	1397.68607	2.4391	0.001707	0.47627	0.00033332	2.9154	0.0020403	699.850504015236	9.7889	0.27486	9.7889	9.6824	9.9573	0	450	52	1.02367897599655	0.0342345274153426	1.02367897599655	414.063730649099	0	13.847384259119						906	32	6	NaN	NaN	NaN	0.0017462	1	15372	85.821	66.565	1	452450			22652	1509	19113	19657	22652	22652	533	
YNIMLVR	7	Unmodified	_YNIMLVR_			0	0	0	P50990	P50990	P50990	CCT8	T-complex protein 1 subunit theta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.754756	907.494958	-0.6329	-0.00028782	-1.647	-0.00074897	-2.2799	-0.0010368	454.754121025548	10.117	0.15074	10.117	10.064	10.214	0	750	46	0.820941264895493	0.0306285018586598	0.820941264895493	333.810346357325	0	12.4541319227591						317	18	3	NaN	NaN	NaN	0.0094774	1	2464	64.547	51.995	1	111750			22653	1174	19114	19658	22653	22653		
YNLDASEEEDSNK	13	Unmodified	_YNLDASEEEDSNK_			0	0	0	O95218	O95218	O95218	ZRANB2	Zinc finger Ran-binding domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	757.318082	1512.62161	2.4088	0.0018242	-0.72631	-0.00055005	1.6825	0.0012742	757.317996424966	4.8667	0.15071	4.8667	4.8312	4.9819	0	474	40	1.00756305028564	0.0262046696285547	1.00756305028564	407.241556716894	0	10.5915262074757						365	18	3	NaN	NaN	NaN	0.00019255	1	18875	73.655	72.152	1	75483			22654	412	19115	19659	22654	22654		
YNLDFWR	7	Unmodified	_YNLDFWR_			0	0	0	Q13630	Q13630	Q13630	TSTA3	GDP-L-fucose synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	507.245609	1012.47667	-0.47922	-0.00024308	-1.5979	-0.00081055	-2.0772	-0.0010536	507.244700869957	13.903	0.1064	13.903	13.85	13.957	1.7764E-15	720	28	0.841341816837976	0.0183490160938558	0.841341816837976	341.576281402599	0	7.44951523780344						230	13	3	NaN	NaN	NaN	0.014501	1	4561	51.456	47.239	1	79414			22655	1697	19116	19660	22655	22655		
YNLEELYQAVENLCSHK	17	Unmodified	_YNLEELYQAVENLCSHK_			0	0	0	Q13619	Q13619	Q13619	CUL4A	Cullin-4A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	704.001845	2108.9837	0.0033193	2.3368E-06	0.28978	0.000204	0.2931	0.00020634	704.336612470096	18.789	0.070962	18.789	18.754	18.825	0	564	28	0.946969335010767	0.018214610793113	0.946969335010767	572.649426576283	0	11.0147034759765						192	9	4	NaN	NaN	NaN	1.0201E-06	1	33455	101.43	90.67	1	45790			22656	1696	19117	19661	22656	22656		
YNLGLDLR	8	Unmodified	_YNLGLDLR_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	482.266542	962.51853	-0.14568	-7.0258E-05	-0.48679	-0.00023476	-0.63247	-0.00030502	482.266099601433	11.456	0.1153	11.456	11.394	11.509	0	696	37	0.857641857947968	0.0244398769037869	0.857641857947968	348.436152358972	0	9.92924563273709						257	14	3	NaN	NaN	NaN	0.0025591	1	3496	82.716	44.394	1	109340			22657	472	19118	19662	22657	22657		
YNLQEVVK	8	Unmodified	_YNLQEVVK_			0	0	0	Q9NXG2	Q9NXG2	Q9NXG2	THUMPD1	THUMP domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.7742	991.533846	0.51873	0.00025769	0.6505	0.00032315	1.1692	0.00058085	496.774515053456	7.864	0.097533	7.864	7.8285	7.9261	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	359.859009267238	0	7.42889441887502						158	12	3	NaN	NaN	NaN	0.0019653	1	4096	94.806	68.583	1	39701			22658	3103	19119	19663	22658	22658		
YNLQLNPEWR	10	Unmodified	_YNLQLNPEWR_			0	0	0	Q9NWS0	Q9NWS0	Q9NWS0	PIH1D1	PIH1 domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.838394	1331.66223	0.62358	0.00041582	4.7018	0.0031353	5.3254	0.0035512	667.343694005132	12.121	0.14189	12.121	12.077	12.219	0	525	28	0.973257487423603	0.0181818689972096	0.973257487423603	393.860079646719	0	7.35788058545955						208	17	2	NaN	NaN	NaN	5.5123E-05	1	13348	108.3	96.236	1	75674			22659	3082	19120	19664	22659	22659		
YNMGLPVDFDQYNELHLPAVILK	23	Unmodified	_YNMGLPVDFDQYNELHLPAVILK_			0	0	0	Q07960	Q07960	Q07960	ARHGAP1	Rho GTPase-activating protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	897.127996	2688.36216	0.80916	0.00072592	0.29633	0.00026585	1.1055	0.00099177	897.462152616828	19.41	0.03539	19.41	19.401	19.437	0	441	19	1.02971785871157	0.0120752645254505	1.02971785871157	621.810975321758	0	7.29183431006402						81	5	4	NaN	NaN	NaN	0.025406	1	37573	17.238	16.639	1	12841			22660	1573	19121	19665	22660	22660		
YNNPAMLHNIDQEMLK	16	Unmodified	_YNNPAMLHNIDQEMLK_			0	0	0	Q9UNS2	Q9UNS2	Q9UNS2	COPS3	COP9 signalosome complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	644.309844	1929.9077	0.56638	0.00036492	-0.23091	-0.00014878	0.33547	0.00021615	644.309867228672	11.181	0.11526	11.181	11.137	11.252	0	639	34	0.896281965493857	0.0223395647977513	0.896281965493857	542.326415558875	0	13.5173266542679						358	14	5	NaN	NaN	NaN	6.1543E-05	1	30287	75.5	64.713	1	116890			22661	3306	19122	19666	22661	22661		
YNPENLATLER	11	Unmodified	_YNPENLATLER_			0	0	0	Q9UBQ5	Q9UBQ5	Q9UBQ5	EIF3K	Eukaryotic translation initiation factor 3 subunit K	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	660.333141	1318.65173	0.90654	0.00059862	-1.9996	-0.0013204	-1.0931	-0.00072179	660.33204668161	9.3898	0.133	9.3898	9.3366	9.4696	0	531	49	0.969216233931596	0.0323345110128962	0.969216233931596	392.264426992286	0	13.0865311480582						574	16	4	NaN	NaN	NaN	4.5892E-05	1	12929	118.91	104.91	1	412640			22662	3184	19123	19667	22662	22662		
YNQMDSTEDAQEEFGWK	17	Unmodified	_YNQMDSTEDAQEEFGWK_			0	0	0	Q99805	Q99805	Q99805	TM9SF2	Transmembrane 9 superfamily member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1039.42583	2076.8371	1.7405	0.0018091	0.26394	0.00027434	2.0044	0.0020834	1039.92733460965	11.438	0.070957	11.438	11.403	11.474	0	225	43	1.17390432875292	0.0278975958316861	1.17390432875292	473.303469046077	0	11.2479599587212						315	9	4	NaN	NaN	NaN	2.0503E-05	1	32967	80.815	79.446	1	65484			22663	2675	19124	19668	22663	22663		
YNQPFFVTSLPDDK	14	Unmodified	_YNQPFFVTSLPDDK_			0	0	0	P29144	P29144	P29144	TPP2	Tripeptidyl-peptidase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	835.90667	1669.79879	2.3067	0.0019282	0.57029	0.00047671	2.877	0.0024049	835.906896859981	14.081	0.13301	14.081	14.001	14.134	0	345	61	1.09397730668811	0.0400736445375593	1.09397730668811	441.791260601087	0	16.1833210148806						533	16	4	NaN	NaN	NaN	1.4595E-05	1	23616	99.589	97.287	1	126600			22664	883	19125	19669	22664	22664		
YNTEEFITVYPTDPPK	16	Unmodified	_YNTEEFITVYPTDPPK_			0	0	0	Q96BN8	Q96BN8	Q96BN8	OTULIN	Ubiquitin thioesterase otulin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.462007	1912.90946	1.7073	0.0016347	-2.8504	-0.0027292	-1.1432	-0.0010945	957.460277109286	13.052	0.20392	13.052	12.91	13.114	0	228	52	1.17191150690002	0.0338640233307155	1.17191150690002	472.768829048754	0	13.6613170556639						689	24	4	NaN	NaN	NaN	7.3594E-05	1	29899	81.48	69.462	1	150740			22665	2484	19126	19670	22665	22665		
YNTIETFNELFDAHK	15	Unmodified	_YNTIETFNELFDAHK_			0	0	0	Q8N3C0	Q8N3C0	Q8N3C0	ASCC3	Activating signal cointegrator 1 complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	614.628336	1840.86318	-0.32211	-0.00019798	-1.1336	-0.00069673	-1.4557	-0.0008947	614.961911028342	15.455	0.09766	15.455	15.411	15.508	0	681	28	0.867820189810857	0.018315911392907	0.867820189810857	525.285735616596	0	11.0864982198772						214	12	4	NaN	NaN	NaN	2.1407E-12	1	28243	159.44	148.47	1	47446			22666	2245	19127	19671	22666	22666		
YNVLGAETVLNQMR	14	Unmodified	_YNVLGAETVLNQMR_			0	0	0	Q1KMD3	Q1KMD3	Q1KMD3	HNRNPUL2	Heterogeneous nuclear ribonucleoprotein U-like protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.41414	1606.81373	1.772	0.0014254	-1.9538	-0.0015716	-0.18176	-0.00014621	804.913462858453	14.622	0.17733	14.622	14.577	14.755	0	378	73	1.07192009927972	0.0481281586395639	1.07192009927972	433.023322068825	0	19.4423214502305						557	21	4	NaN	NaN	NaN	4.2766E-06	1	21824	103.76	91.742	1	181860			22667	1919	19128	19672	22667	22667		
YNVYPTYDFACPIVDSIEGVTHALR	25	Unmodified	_YNVYPTYDFACPIVDSIEGVTHALR_			0	0	0	P07814	P07814	P07814	EPRS	Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	967.46897	2899.38508	1.7719	0.0017142	0.52125	0.0005043	2.2931	0.0022185	967.804108653606	20.013	0.035463	20.013	19.995	20.031	0	333	169	1.10198982404297	0.112005876438817	1.10198982404297	665.204264070537	0	67.6111384901079						598	5	5	NaN	NaN	NaN	1.1429E-09	1	38073	113.66	112.97	1	158950			22668	565	19129	19673	22668	22668		
YPALTKPENQDIDWTLLEGETR	22	Unmodified	_YPALTKPENQDIDWTLLEGETR_			0	0	1	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	863.765892	2588.27585	1.5204	0.0013133	0.42155	0.00036412	1.942	0.0016774	864.099672908227	14.666	0.15075	14.666	14.604	14.755	0	483	91	1.00151498427745	0.0605183528841725	1.00151498427745	604.900537717309	0	36.5522081807019						1395	18	7	NaN	NaN	NaN	2.5514E-16	1	37194	121.23	114.55	1	446510			22669	683	19130	19674	22669	22669		
YPDLYPQEDEDEEEEREK	18	Unmodified	_YPDLYPQEDEDEEEEREK_			0	0	1	Q8N4Q1	Q8N4Q1	Q8N4Q1	CHCHD4	Mitochondrial intermembrane space import and assembly protein 40	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	771.660758	2311.96045	2.4568	0.0018958	0.15931	0.00012293	2.6161	0.0020188	771.995358502496	7.7487	0.22179	7.7487	7.6156	7.8374	0	531	31	0.969216233931596	0.0202118620218336	0.969216233931596	585.766082145173	0	12.215461127144						362	26	3	NaN	NaN	NaN	7.2242E-06	1	35730	59.77	58.828	1	81405			22670	2253	19131	19675	22670	22670		
YPDPLIK	7	Unmodified	_YPDPLIK_			0	0	0	P62701;Q8TD47	P62701	P62701	RPS4X;RPS4Y2	40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	423.242004	844.469455	-0.81957	-0.00034688	-0.92349	-0.00039086	-1.7431	-0.00073774	423.241584132569	8.077	0.55001	8.077	7.8108	8.3608	0	828	73	0.767766820543916	0.0491251136951965	0.767766820543916	312.535680039553	0	19.9974138044565						1252	63	4	NaN	NaN	NaN	0.036967	1	1485	53.679	25.975	1	683290			22671	1394	19132	19676	22671	22671		
YPDSHQLFVGNLPHDIDENELK	22	Unmodified	_YPDSHQLFVGNLPHDIDENELK_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	860.750354	2579.22923	2.8229	0.0024298	-2.0169	-0.0017361	0.80592	0.00069369	861.082987839197	12.901	0.15964	12.901	12.848	13.008	0	477	73	1.0055473068722	0.0483945919440341	1.0055473068722	607.347387956276	0	29.2301802287602						968	19	4	NaN	NaN	NaN	0.016895	1	37157	25.883	25.578	1	219650			22672	3292	19133	19677	22672	22672		
YPDSHQLFVGNLPHDIDENELK	22	Unmodified	_YPDSHQLFVGNLPHDIDENELK_			0	0	0	Q9UN86	Q9UN86	Q9UN86	G3BP2	Ras GTPase-activating protein-binding protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	645.814584	2579.22923	2.1592	0.0013944	0.3698	0.00023882	2.529	0.0016333	646.064470432161	12.893	0.1951	12.893	12.83	13.026	0	546	37	0.959108205975751	0.024267665443817	0.959108205975751	772.396131489026	0	19.5434162613641						797	23	5	NaN	NaN	NaN	0.00050694	1	37158	44.853	43.602	1	291410			22673	3292	19133	19677	22673	22673		
YPEAPPFVR	9	Unmodified	_YPEAPPFVR_			0	0	0	Q13404	Q13404	Q13404	UBE2V1	Ubiquitin-conjugating enzyme E2 variant 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.282192	1074.54983	0.32475	0.00017481	-0.79337	-0.00042706	-0.46862	-0.00025225	538.282031057021	9.5494	0.31921	9.5494	9.4076	9.7268	0	702	112	0.853568545818287	0.0752884099097577	0.853568545818287	346.271644497653	0	30.5426455072482						1728	37	4	NaN	NaN	NaN	0.00045661	1	6072	58.286	46.637	1	620280			22674	1659	19134	19678	22674	22674		
YPEAPPSVR	9	Unmodified	_YPEAPPSVR_			0	0	0	Q15819	Q15819	Q15819	UBE2V2	Ubiquitin-conjugating enzyme E2 variant 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	508.263999	1014.51345	0.32349	0.00016442	2.7102	0.0013775	3.0336	0.0015419	508.265701776382	5.2745	0.35469	5.2745	5.1238	5.4785	0	681	82	0.867820189810857	0.0549935810032586	0.867820189810857	352.316728159396	0	22.3262361907708						1089	41	2	NaN	NaN	NaN	0.012265	1	4617	56.378	47.615	1	406550			22675	1871	19135	19679	22675	22675		
YPEETLSLMTK	11	Oxidation (M)	_YPEETLSLM(Oxidation (M))TK_	YPEETLSLM(1)TK	YPEETLSLM(55)TK	0	1	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	664.326136	1326.63772	1.2185	0.00080946	3.5192	0.0023379	4.7376	0.0031473	664.327889527104	8.4318	0.17738	8.4318	8.3253	8.5027	0	513	31	0.981336640919867	0.0201895069753196	0.981336640919867	397.145022565364	0	8.17065405382294						206	21	2	NaN	NaN	NaN	0.025083	1	13179	54.584	46.582	1	82229			22676	1465	19136	19680	22676	22676	526	
YPENFFLLR	9	Unmodified	_YPENFFLLR_			0	0	0	P62136;P36873;P62140	P62136;P36873;P62140	P62140	PPP1CA;PPP1CC;PPP1CB	Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	599.816399	1197.61824	0.85828	0.00051481	-0.82583	-0.00049535	0.032445	1.9461E-05	599.815799657996	15.437	0.36367	15.437	15.313	15.677	0	585	67	0.932794566565362	0.0445770735630894	0.932794566565362	377.919091646037	0	18.0602758131748						1388	42	4	NaN	NaN	NaN	1.4136E-06	1	9390	155.82	128.08	1	877600			22677	1366;992;1365	19137	19681	22677	22677		
YPFESAEAQLLNK	13	Unmodified	_YPFESAEAQLLNK_			0	0	0	P23921	P23921	P23921	RRM1	Ribonucleoside-diphosphate reductase large subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.382831	1508.75111	1.6883	0.0012753	0.74801	0.00056503	2.4363	0.0018403	755.383686505675	13.034	0.29264	13.034	12.83	13.123	0	411	31	1.04982941439551	0.0200976833254141	1.04982941439551	424.334838546817	0	8.12336470298374						495	34	3	NaN	NaN	NaN	0.03891	1	18759	44.598	41.926	1	130320			22678	828	19138	19682	22678	22678		
YPFILPHQQVDK	12	Unmodified	_YPFILPHQQVDK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.601393	1483.78235	-1.7467	-0.00086566	-0.32452	-0.00016083	-2.0712	-0.0010265	495.601140694844	9.5494	0.266	9.5494	9.3987	9.6647	0	786	40	0.796423123669906	0.0265742584315366	0.796423123669906	482.93510646319	0	16.114100587232						695	31	4	NaN	NaN	NaN	0.003078	1	18030	74.849	52.805	1	203610			22679	3276	19139	19683	22679	22679		
YPFILPHQQVDK	12	Unmodified	_YPFILPHQQVDK_			0	0	0	Q9ULC4	Q9ULC4	Q9ULC4	MCTS1	Malignant T-cell-amplified sequence 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	495.601393	1483.78235	-1.377	-0.00068243	-0.4959	-0.00024577	-1.8729	-0.0009282	495.601108221114	9.5317	0.29261	9.5317	9.381	9.6736	0	825	28	0.769815552739974	0.0184385915537137	0.769815552739974	466.800806580691	0	11.1807943849021						722	34	4	NaN	NaN	NaN	0.0038019	1	18031	51.531	44.784	1	221010			22680	3276	19139	19683	22680	22680		
YPGGESYQDLVQR	13	Unmodified	_YPGGESYQDLVQR_			0	0	0	O60825	O60825	O60825	PFKFB2	6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	756.359887	1510.70522	1.6427	0.0012425	0.92675	0.00070096	2.5695	0.0019435	756.360477057958	8.973	0.15074	8.973	8.9198	9.0706	0	435	34	1.03374239103424	0.0221334029246503	1.03374239103424	417.827645100752	0	8.94608531320875						311	18	4	NaN	NaN	NaN	0.059163	1	18825	44.598	33.81	1	79283			22681	284	19140	19684	22681	22681		
YPGSTFMDHVLR	12	Unmodified	_YPGSTFMDHVLR_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	474.899333	1421.67617	-2.1461	-0.0010192	-0.51378	-0.00024399	-2.6598	-0.0012632	474.899003972702	11.713	0.41684	11.713	11.438	11.855	0	786	22	0.796423123669906	0.0143131971978526	0.796423123669906	483.129727989176	0	8.68273517347046						659	48	3	NaN	NaN	NaN	0.00024414	1	16136	64.064	60.457	1	194690			22682	1235	19141	19685	22682	22682		
YPHVEDYR	8	Unmodified	_YPHVEDYR_			0	0	0	P61289	P61289	P61289	PSME3	Proteasome activator complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	360.169929	1077.48796	-0.61997	-0.00022329	0.42219	0.00015206	-0.19779	-7.1236E-05	360.169914012037	4.6539	0.22166	4.6539	4.4765	4.6982	0	903	25	0.716455593386714	0.0164482373067539	0.716455593386714	435.952273447604	0	10.0085008956231						151	26	2	NaN	NaN	NaN	0.037797	1	6137	33.396	30.797	1	25341			22683	1340	19142	19686	22683	22683		
YPIEHGIITNWDDMEK	16	Unmodified	_YPIEHGIITNWDDMEK_			0	0	0	P68133;P68032;P62736;P63267	P68133	P68133	ACTA1;ACTC1;ACTA2;ACTG2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.308498	1959.90366	-0.084881	-5.5539E-05	-0.7988	-0.00052266	-0.88368	-0.0005782	654.642464645062	11.536	0.11533	11.536	11.483	11.598	0	678	49	0.869855008346864	0.0325458093400007	0.869855008346864	526.278419323431	0	19.6908185050389						615	14	5	NaN	NaN	NaN	0.00096525	1	30904	61.194	56.948	1	163730			22684	1444	19143	19687	22684	22684		
YPIEHGIITNWDDMEK	16	Unmodified	_YPIEHGIITNWDDMEK_			0	0	0	P68133;P68032;P62736;P63267	P68133	P68133	ACTA1;ACTC1;ACTA2;ACTG2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.308498	1959.90366	0.65612	0.00042931	-0.27794	-0.00018186	0.37819	0.00024745	654.642204102919	10.986	0.13302	10.986	10.933	11.066	0	654	37	0.886123392477847	0.0243890366748388	0.886123392477847	536.121091601408	0	14.7558196479372						223	16	2	NaN	NaN	NaN	0.00194	1	30906	49.097	43.709	1	131850			22685	1444	19143	19687	22685	22685		
YPIEHGIITNWDDMEK	16	Unmodified	_YPIEHGIITNWDDMEK_			0	0	0	P68133;P68032;P62736;P63267	P68133	P68133	ACTA1;ACTC1;ACTA2;ACTG2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.308498	1959.90366	0.70528	0.00046147	1.5188	0.00099379	2.2241	0.0014553	654.643928991498	11.758	0.62078	11.758	11.66	12.281	0	636	145	0.898312834727904	0.0975699379710376	0.898312834727904	543.495923428195	0	59.0316218207691						6193	71	7	NaN	NaN	NaN	3.144E-05	1	30907	92.707	86.33	1	20569000			22686	1444	19143	19687	22686	22686		
YPIEHGIITNWDDMEK	16	Unmodified	_YPIEHGIITNWDDMEK_			0	0	0	P68133;P68032;P62736;P63267	P68133	P68133	ACTA1;ACTC1;ACTA2;ACTG2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	980.959108	1959.90366	2.0576	0.0020184	1.2874	0.0012629	3.3451	0.0032814	981.462205826171	11.758	0.46113	11.758	11.66	12.121	0	177	154	1.2057522832638	0.101536548228523	1.2057522832638	486.336751410195	0	40.9544777151049						6128	53	7	NaN	NaN	NaN	1.4303E-26	1	30908	193.34	171.97	1	10053000			22687	1444	19143	19687	22687	22687		
YPIEHGIITNWDDMEK	16	Oxidation (M)	_YPIEHGIITNWDDM(Oxidation (M))EK_	YPIEHGIITNWDDM(1)EK	YPIEHGIITNWDDM(70)EK	0	1	0	P68133;P68032;P62736;P63267	P68133	P68133	ACTA1;ACTC1;ACTA2;ACTG2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.640136	1975.89858	0.64668	0.00042657	0.36195	0.00023876	1.0086	0.00066533	659.974594542096	9.1947	0.070949	9.1947	9.1681	9.2391	0	606	52	0.918606045818476	0.0344865119804736	0.918606045818476	555.742093008369	0	20.8637929565443						261	9	3	NaN	NaN	NaN	0.0036798	1	31214	70.195	64.807	1	51324			22688	1444	19143	19688	22688	22688	514	
YPIEHGIITNWDDMEK	16	Oxidation (M)	_YPIEHGIITNWDDM(Oxidation (M))EK_	YPIEHGIITNWDDM(1)EK	YPIEHGIITNWDDM(120)EK	0	1	0	P68133;P68032;P62736;P63267	P68133	P68133	ACTA1;ACTC1;ACTA2;ACTG2	Actin, alpha skeletal muscle;Actin, alpha cardiac muscle 1;Actin, aortic smooth muscle;Actin, gamma-enteric smooth muscle	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.640136	1975.89858	1.0492	0.0006921	2.4523	0.0016177	3.5016	0.0023098	659.976304376122	10.037	0.4522	10.037	9.9307	10.383	0	657	79	0.884090832094921	0.0528429466226114	0.884090832094921	534.860928149163	0	31.9691444031081						2846	52	7	NaN	NaN	NaN	1.4867E-06	1	31216	123.92	122.21	1	4961600			22689	1444	19143	19688	22689	22689	514	
YPIEHGIVTNWDDMEK	16	Unmodified	_YPIEHGIVTNWDDMEK_			0	0	0	P60709;P63261	P60709;P63261	P60709	ACTB;ACTG1	Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	649.636614	1945.88801	-0.032703	-2.1245E-05	0.38525	0.00025027	0.35255	0.00022903	649.971246903795	11.695	0.10641	11.695	11.633	11.74	0	654	67	0.886123392477847	0.0447442889096176	0.886123392477847	536.148212937517	0	27.0724943520223						764	13	5	NaN	NaN	NaN	1.7895E-06	1	30636	139.7	133.5	1	264380			22690	1310;1436	19144	19689	22690	22690		
YPIFFFGTHETAFLGPK	17	Unmodified	_YPIFFFGTHETAFLGPK_			0	0	0	Q7Z4V5;Q9Y3E1	Q7Z4V5	Q7Z4V5	HDGFRP2;HDGFRP3	Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	658.004967	1970.99307	-0.84434	-0.00055558	-0.73354	-0.00048267	-1.5779	-0.0010383	658.338737551358	17.007	0.097523	17.007	16.963	17.06	0	594	49	0.926715457081489	0.0324421500815294	0.926715457081489	560.65788604601	0	19.6273269691434						276	12	3	NaN	NaN	NaN	0.036201	1	31129	12.17	12.019	1	47831			22691	2141	19145	19690	22691	22691		
YPLFEGQETGK	11	Unmodified	_YPLFEGQETGK_			0	0	0	P41250	P41250	P41250	GARS	Glycine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	634.81151	1267.60847	2.0458	0.0012987	-0.12282	-7.7966E-05	1.923	0.0012207	634.811760872669	8.1745	0.43477	8.1745	7.9881	8.4229	0	528	76	0.971237000454584	0.0505471707378068	0.971237000454584	393.246361226312	0	20.4661590874566						1391	50	4	NaN	NaN	NaN	9.5254E-08	1	11436	126.29	119.14	1	861350			22692	1035	19146	19691	22692	22692		
YPLIIDPSGQATEFIMNEYK	20	Unmodified	_YPLIIDPSGQATEFIMNEYK_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1165.07467	2328.13479	0.14918	0.00017381	-1.7891	-0.0020844	-1.6399	-0.0019106	1165.57425449212	18.763	0.079806	18.763	18.727	18.807	0	63	46	1.28111162701928	0.0296839714567931	1.28111162701928	516.157640024548	0	11.959620325469						280	10	4	NaN	NaN	NaN	0.033124	1	35883	23.432	23.127	1	51247			22693	1737	19147	19692	22693	22693		
YPLSWIEEVK	10	Unmodified	_YPLSWIEEVK_			0	0	0	Q96EN8	Q96EN8	Q96EN8	MOCOS	Molybdenum cofactor sulfurase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.334621	1262.65469	0.67404	0.00042622	5.3696	0.0033954	6.0437	0.0038216	632.335341187274	14.701	0.31922	14.701	14.56	14.879	0	543	76	0.961130371139249	0.0505751639210029	0.961130371139249	389.170695280517	0	20.4783578774364						961	37	5	NaN	NaN	NaN	0.048069	1	11303	41.796	27.033	1	258510			22694	2516	19148	19693	22694	22694		
YPNAELAWCQEEHK	14	Unmodified	_YPNAELAWCQEEHK_			0	0	0	Q02218	Q02218	Q02218	OGDH	2-oxoglutarate dehydrogenase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.896311	1773.77807	2.7266	0.0024209	-0.74452	-0.00066106	1.9821	0.0017599	888.39716849766	8.2454	0.14192	8.2454	8.1479	8.2898	0	264	31	1.14797626962532	0.0199652358426974	1.14797626962532	463.37444610474	0	8.05886005202865						292	17	3	NaN	NaN	NaN	1.2716E-05	1	26498	66.485	62.981	1	66850			22695	1526	19149	19694	22695	22695		
YPNIELSYEVVDK	13	Unmodified	_YPNIELSYEVVDK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	784.895771	1567.77699	1.2859	0.0010093	3.2103	0.0025197	4.4962	0.0035291	785.399046714453	13.105	0.31916	13.105	12.99	13.309	0	396	40	1.05987478976334	0.0261107757546724	1.05987478976334	428.248461775121	0	10.5502080629641						379	37	4	NaN	NaN	NaN	0.00018292	1	20590	81.48	69.462	1	72174			22696	350	19150	19695	22696	22696		
YPNLQVIGGNVVTAAQAK	18	Unmodified	_YPNLQVIGGNVVTAAQAK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.00725	1841.99995	1.5429	0.0014225	-0.3858	-0.00035571	1.1571	0.0010668	922.007092977365	13.664	0.39899	13.664	13.425	13.824	0	129	40	1.23753038177212	0.0257966977924515	1.23753038177212	499.37895688486	0	10.4097064802734						582	46	3	NaN	NaN	NaN	3.5267E-07	1	28290	130.78	123.21	1	124490			22697	666	19151	19696	22697	22697		
YPNLQVIGGNVVTAAQAK	18	Unmodified	_YPNLQVIGGNVVTAAQAK_			0	0	0	P12268	P12268	P12268	IMPDH2	Inosine-5-monophosphate dehydrogenase 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	922.00725	1841.99995	2.0543	0.001894	0.76497	0.00070531	2.8192	0.0025994	922.008212954742	13.682	0.51435	13.682	13.221	13.735	-1.7764E-15	177	28	1.2057522832638	0.0178911243069704	1.2057522832638	486.555579695078	0	7.21958106934818						441	59	2	NaN	NaN	NaN	2.8967E-10	1	28291	113.86	105.06	1	183040			22698	666	19151	19696	22698	22698		
YPPPTELLDLQPLPVSALR	19	Unmodified	_YPPPTELLDLQPLPVSALR_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1060.09352	2118.17249	0.37675	0.00039939	-0.66356	-0.00070344	-0.28681	-0.00030405	1060.59431884724	19.286	0.22167	19.286	19.162	19.383	0	156	37	1.21966378336455	0.0238335707424004	1.21966378336455	491.689367430988	0	9.60815060821557						529	26	3	NaN	NaN	NaN	0.024966	1	33599	27.669	26.195	1	154090			22699	350	19152	19697	22699	22699		
YPQLLPGIR	9	Unmodified	_YPQLLPGIR_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	528.813659	1055.61277	0.21463	0.0001135	-1.3783	-0.00072884	-1.1636	-0.00061534	528.81312940235	12.609	0.55863	12.609	12.29	12.848	0	672	49	0.873923798053065	0.0325412920913477	0.873923798053065	354.609755913773	0	13.2041943145836						1009	64	3	NaN	NaN	NaN	9.5513E-05	1	5618	100.75	80.521	1	1066100			22700	822	19153	19698	22700	22700		
YPQLTGFHSDLHFLDK	16	Unmodified	_YPQLTGFHSDLHFLDK_			0	0	0	O95466	O95466	O95466	FMNL1	Formin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	639.987976	1916.9421	0.088726	5.6783E-05	-1.4721	-0.00094214	-1.3834	-0.00088535	640.321214144757	13.274	0.15963	13.274	13.159	13.318	0	645	25	0.892219381832517	0.0162525902140942	0.892219381832517	539.894253982389	0	9.83466650421519						271	19	3	NaN	NaN	NaN	0.0027763	1	29992	46.358	37.202	1	58511			22701	437	19154	19699	22701	22701		
YPSHSFIGEESVAAGEK	17	Unmodified	_YPSHSFIGEESVAAGEK_			0	0	0	P29218	P29218	P29218	IMPA1	Inositol monophosphatase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	603.288091	1806.84244	-0.059586	-3.5947E-05	0.1194	7.2034E-05	0.059817	3.6087E-05	603.287948329686	7.2698	0.088674	7.2698	7.2432	7.3319	0	708	19	0.849494101904619	0.0122250304195799	0.849494101904619	514.265390878403	0	7.40076950873464						183	11	4	NaN	NaN	NaN	0.00010149	1	27392	90.156	76.981	1	40212			22702	884	19155	19700	22702	22702		
YPSPFFVFGEK	11	Unmodified	_YPSPFFVFGEK_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	659.329339	1316.64412	0.49314	0.00032514	-1.8814	-0.0012405	-1.3883	-0.00091535	659.328123682135	16.493	0.46995	16.493	16.28	16.75	0	564	58	0.946969335010767	0.0384424338892226	0.946969335010767	383.266647270892	0	15.5587960506533						2048	54	4	NaN	NaN	NaN	0.00042407	1	12872	99.855	78.58	1	1117700			22703	1575	19156	19701	22703	22703		
YPVGVHFLPK	10	Unmodified	_YPVGVHFLPK_			0	0	0	P23526	P23526	P23526	AHCY	Adenosylhomocysteinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	578.829309	1155.64407	1.1184	0.00064734	-0.69771	-0.00040385	0.42065	0.00024348	578.828958006054	9.1504	0.17737	9.1504	9.0794	9.2568	0	567	61	0.944945209309785	0.0404685229802539	0.944945209309785	383.000231091756	0	16.4024892667592						630	21	3	NaN	NaN	NaN	0.0007623	1	8229	89.123	72.666	1	233340			22704	822	19157	19702	22704	22704		
YPVPENWLHK	10	Unmodified	_YPVPENWLHK_			0	0	0	P39748	P39748	P39748	FEN1	Flap endonuclease 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	428.224146	1281.65061	-0.68618	-0.00029384	-2.1411	-0.00091687	-2.8273	-0.0012107	428.223222945691	9.9041	0.21278	9.9041	9.8066	10.019	0	867	58	0.741107305531458	0.0389747792580633	0.741107305531458	450.046029072047	0	23.6678879133063						1002	25	4	NaN	NaN	NaN	0.0026219	1	11814	86.205	73.378	1	561920			22705	1013	19158	19703	22705	22705		
YPVWLWK	7	Unmodified	_YPVWLWK_			0	0	0	Q13084	Q13084	Q13084	MRPL28	39S ribosomal protein L28, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	496.273638	990.532724	-1.9938	-0.00098949	0.20624	0.00010235	-1.7876	-0.00088713	496.273768541694	14.808	0.21283	14.808	14.746	14.959	0	738	37	0.829104889055312	0.0244840671338465	0.829104889055312	336.708176831961	0	9.94323603068136						298	25	2	NaN	NaN	NaN	0.0033508	1	4068	97.926	85.859	1	84690			22706	1624	19159	19704	22706	22706		
YPYMVEWYTK	10	Unmodified	_YPYMVEWYTK_			0	0	0	Q9H0P0	Q9H0P0	Q9H0P0	NT5C3A	Cytosolic 5-nucleotidase 3A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	690.320657	1378.62676	1.3114	0.00090531	2.5186	0.0017386	3.83	0.0026439	690.322898905662	13.487	0.15961	13.487	13.407	13.567	0	474	28	1.00756305028564	0.0181416924529938	1.00756305028564	407.600248181409	0	7.33905272148951						300	19	4	NaN	NaN	NaN	0.0024953	1	14760	67.881	61.19	1	89900			22707	2848	19160	19705	22707	22707		
YPYWPHQPIENL	12	Unmodified	_YPYWPHQPIENL_			0	0	0	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	778.880259	1555.74596	1.6136	0.0012568	0.98391	0.00076635	2.5975	0.0020231	779.382453258214	14.001	0.1862	14.001	13.859	14.045	0	399	55	1.0578662689527	0.0361558820177341	1.0578662689527	427.465853973735	0	14.6099799535015						452	22	3	NaN	NaN	NaN	0.0060495	1	20228	70.389	69.337	1	229140			22708	372	19161	19706	22708	22708		
YQAECSQFK	9	Unmodified	_YQAECSQFK_			0	0	0	P15924	P15924	P15924	DSP	Desmoplakin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	580.755681	1159.49681	2.0267	0.001177	1.2554	0.00072908	3.2821	0.0019061	580.756272642094	3.776	0.13301	3.776	3.7406	3.8736	-4.4409E-16	627	34	0.90440375274676	0.0223302721813649	0.90440375274676	366.553808137925	0	9.05043381341164						240	16	3	NaN	NaN	NaN	0.010978	1	8333	65.404	54.702	1	93506			22709	718	19162	19707	22709	22709		
YQAVTATLEEK	11	Unmodified	_YQAVTATLEEK_			0	0	0	P40429;Q6NVV1	P40429	P40429	RPL13A;RPL13AP3	60S ribosomal protein L13a;Putative 60S ribosomal protein L13a protein RPL13AP3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	626.824618	1251.63468	2.1697	0.00136	1.6132	0.0010112	3.7828	0.0023712	626.825875095439	6.7111	0.37237	6.7111	6.6491	7.0214	0	534	79	0.967195187796614	0.0525872535144811	0.967195187796614	391.66371159849	0	21.2951006726716						1160	43	5	NaN	NaN	NaN	1.9829E-07	1	10964	144.47	95.147	1	990050			22710	1018	19163	19708	22710	22710		
YQCVVLTEMK	10	Unmodified	_YQCVVLTEMK_			0	0	0	A0AVT1	A0AVT1	A0AVT1	UBA6	Ubiquitin-like modifier-activating enzyme 6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	635.812141	1269.60973	0.79379	0.0005047	2.594	0.0016493	3.3877	0.002154	635.813787884045	9.3632	0.14191	9.3632	9.2834	9.4253	0	531	34	0.969216233931596	0.0222253598495629	0.969216233931596	392.42149056781	0	8.99872343779475						306	17	4	NaN	NaN	NaN	0.0054641	1	11497	53.517	37.059	1	62438			22711	3	19164	19709	22711	22711		
YQDILVFR	8	Unmodified	_YQDILVFR_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.290017	1052.56548	0.431	0.00022726	-2.4467	-0.0012901	-2.0157	-0.0010629	527.288446731283	12.697	0.23943	12.697	12.618	12.857	0	669	43	0.875957769340875	0.0284775811147984	0.875957769340875	355.448330607549	0	11.5557039634602						655	28	3	NaN	NaN	NaN	7.3466E-05	1	5541	126.2	102.9	1	386980			22712	771	19165	19710	22712	22712		
YQDLGAYSSAR	11	Unmodified	_YQDLGAYSSAR_			0	0	0	O96000	O96000	O96000	NDUFB10	NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	615.791109	1229.56767	2.2352	0.0013764	2.7936	0.0017203	5.0288	0.0030967	615.792882858583	5.6471	0.14193	5.6471	5.6026	5.7445	0	546	37	0.959108205975751	0.0242710246218105	0.959108205975751	388.464943936129	0	9.83042597304438						214	17	2	NaN	NaN	NaN	0.019443	1	10287	51.872	43.109	1	146100			22713	467	19166	19711	22713	22713		
YQDTPGVK	8	Unmodified	_YQDTPGVK_			0	0	0	P53396	P53396	P53396	ACLY	ATP-citrate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	454.229625	906.444697	-0.15692	-7.1277E-05	0.56644	0.0002573	0.40952	0.00018602	454.230019442169	2.6764	0.13304	2.6764	2.6409	2.774	0	789	31	0.794378096728713	0.0204488487727063	0.794378096728713	323.014824829364	0	8.31503453012959						221	16	3	NaN	NaN	NaN	0.028599	1	2437	43.734	35.731	1	59633			22714	1235	19167	19712	22714	22714		
YQEALHLGSQLLR	13	Unmodified	_YQEALHLGSQLLR_			0	0	0	O00231	O00231	O00231	PSMD11	26S proteasome non-ATPase regulatory subunit 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	509.947452	1526.82053	-0.13877	-7.0768E-05	-0.98677	-0.0005032	-1.1255	-0.00057397	509.947244763079	10.844	0.16847	10.844	10.791	10.959	0	723	34	0.839303037468863	0.022429693259391	0.839303037468863	508.804229878567	0	13.5973805595578						254	20	2	NaN	NaN	NaN	0.00029716	1	19330	99.276	86.002	1	188780			22715	63	19168	19713	22715	22715		
YQEEFEHFQQELDK	14	Unmodified	_YQEEFEHFQQELDK_			0	0	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.947846	1868.82171	0.14091	8.792E-05	-0.51344	-0.00032036	-0.37253	-0.00023244	624.281709025845	10.383	0.15962	10.383	10.339	10.498	0	732	115	0.833184998970724	0.0774791345280226	0.833184998970724	504.264917076728	0	46.8923581152027						1056	19	5	NaN	NaN	NaN	1.1232E-11	1	28895	203.93	187.17	1	654290			22716	1125	19169	19714	22716	22716		
YQEEFEHFQQELDK	14	Unmodified	_YQEEFEHFQQELDK_			0	0	0	P49257	P49257	P49257	LMAN1	Protein ERGIC-53	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	935.41813	1868.82171	2.0749	0.0019409	0.10728	0.00010035	2.1822	0.0020412	935.418335962285	10.383	0.079789	10.383	10.347	10.427	0	216	49	1.17988115188462	0.0318742099074689	1.17988115188462	476.064764266811	0	12.860776868545						289	10	4	NaN	NaN	NaN	0.001774	1	28896	58.338	56.863	1	62347			22717	1125	19169	19714	22717	22717		
YQEELNFDNPLGMR	14	Unmodified	_YQEELNFDNPLGMR_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	863.398686	1724.78282	2.5749	0.0022232	0.92176	0.00079585	3.4967	0.003019	863.400427074255	14.533	0.10639	14.533	14.489	14.595	0	342	34	1.09598084995137	0.022035943167249	1.09598084995137	442.48422579602	0	8.8966492913429						146	13	2	NaN	NaN	NaN	7.1306E-05	1	25183	84.999	76.193	1	41378			22718	3409	19170	19715	22718	22718		
YQEGGVESAFHK	12	Unmodified	_YQEGGVESAFHK_			0	0	0	P40121	P40121	P40121	CAPG	Macrophage-capping protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	676.317491	1350.62043	2.4623	0.0016653	-0.95191	-0.00064379	1.5104	0.0010215	676.316836270236	4.9731	0.21279	4.9731	4.9287	5.1415	0	507	40	0.985374541851584	0.0262409175570258	0.985374541851584	398.706166485317	0	10.6177044360811						453	25	3	NaN	NaN	NaN	0.0044539	1	13896	71.896	49.853	1	190950			22719	1014	19171	19716	22719	22719		
YQELINDIAR	10	Unmodified	_YQELINDIAR_			0	0	0	P46940	P46940	P46940	IQGAP1	Ras GTPase-activating-like protein IQGAP1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	617.824952	1233.63535	1.7587	0.0010866	0.96531	0.00059639	2.7241	0.001683	617.825639366138	10.161	0.24827	10.161	10.064	10.312	0	522	61	0.975277694896658	0.0404181457297914	0.975277694896658	394.999575062807	0	16.3698508349315						607	29	4	NaN	NaN	NaN	1.874E-09	1	10436	146.88	117.78	1	335650			22720	1095	19172	19717	22720	22720		
YQELPNSGPPHDR	13	Unmodified	_YQELPNSGPPHDR_			0	0	0	P19525	P19525	P19525	EIF2AK2	Interferon-induced, double-stranded RNA-activated protein kinase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.357679	1508.7008	2.5119	0.0018974	-2.9929	-0.0022607	-0.48105	-0.00036337	755.355966319609	3.9711	0.070924	3.9711	3.9534	4.0243	0	489	25	0.997481546940468	0.0161359806819593	0.997481546940468	403.176276140212	0	6.52207013069795						111	9	3	NaN	NaN	NaN	0.004521	1	18752	34.779	28.516	1	19455			22721	770	19173	19718	22721	22721		
YQESLGNTVFELENR	15	Unmodified	_YQESLGNTVFELENR_			0	0	0	O43164	O43164	O43164	PJA2	E3 ubiquitin-protein ligase Praja-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.933948	1797.85334	2.4366	0.0021928	3.3076	0.0029766	5.7442	0.0051694	899.936822486926	13.531	0.12413	13.531	13.478	13.602	0	288	46	1.13199748998575	0.0299828961966486	1.13199748998575	456.877221680649	0	12.1011772847982						312	15	3	NaN	NaN	NaN	0.00021923	1	27159	79.235	72.859	1	90988			22722	186	19174	19719	22722	22722		
YQEVTNNLEFAK	12	Unmodified	_YQEVTNNLEFAK_			0	0	0	Q14444	Q14444	Q14444	CAPRIN1	Caprin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	728.359356	1454.70416	2.0642	0.0015035	1.25	0.00091046	3.3142	0.0024139	728.360836792782	8.8487	0.43476	8.8487	8.7334	9.1681	0	435	76	1.03374239103424	0.0503310094148808	1.03374239103424	417.97364282182	0	20.3503653661624						1453	50	5	NaN	NaN	NaN	1.3632E-16	1	17095	195.8	173.75	1	981460			22723	1752	19175	19720	22723	22723		
YQEYIPVQTGAHADLNPFYQK	21	Unmodified	_YQEYIPVQTGAHADLNPFYQK_			0	0	0	Q7Z478	Q7Z478	Q7Z478	DHX29	ATP-dependent RNA helicase DHX29	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	828.072768	2481.19647	1.6879	0.0013977	-0.66217	-0.00054833	1.0257	0.00084936	828.406632167973	12.963	0.062078	12.963	12.937	12.999	0	531	43	0.969216233931596	0.0283005258697965	0.969216233931596	585.527479561931	0	17.0970470806092						238	8	4	NaN	NaN	NaN	0.00075186	1	36733	19.51	18.758	1	39518			22724	2136	19176	19721	22724	22724		
YQEYTNELQETLPQK	15	Unmodified	_YQEYTNELQETLPQK_			0	0	0	Q9UHD2	Q9UHD2	Q9UHD2	TBK1	Serine/threonine-protein kinase TBK1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	942.454713	1882.89487	2.1786	0.0020533	-1.1779	-0.0011101	1.0007	0.00094312	942.955344524902	9.9928	0.13298	9.9928	9.913	10.046	0	261	31	1.14997238118939	0.0199624904566638	1.14997238118939	463.971462833163	0	8.05412899516074						258	16	3	NaN	NaN	NaN	4.705E-06	1	29210	85.813	84.225	1	49147			22725	3214	19177	19722	22725	22725		
YQFDPNLGIR	10	Unmodified	_YQFDPNLGIR_			0	0	0	Q5VYK3	Q5VYK3	Q5VYK3	ECM29	Proteasome-associated protein ECM29 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	611.814387	1221.61422	0.305	0.00018661	-1.2558	-0.00076831	-0.95078	-0.0005817	611.813399663804	11.695	0.20388	11.695	11.58	11.784	0	603	52	0.920633820089869	0.0344578460236871	0.920633820089869	372.908737087694	0	13.9573754114323						410	24	4	NaN	NaN	NaN	0.00095772	1	10067	88.921	64.07	1	161220			22726	2013	19178	19723	22726	22726		
YQGDGIVEDEEETMENNEEK	20	Unmodified	_YQGDGIVEDEEETMENNEEK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1179.48172	2356.94889	2.2716	0.0026793	-0.85291	-0.001006	1.4186	0.0016733	1179.98220592879	10.135	0.062093	10.135	10.108	10.17	0	126	52	1.23951419873743	0.0337248998180355	1.23951419873743	499.36187254959	0	13.5867173944725						284	8	4	NaN	NaN	NaN	1.7174E-05	1	36109	77.325	77.226	1	51468			22727	3113	19179	19724	22727	22727		
YQGDGIVEDEEETMENNEEK	20	Unmodified	_YQGDGIVEDEEETMENNEEK_			0	0	0	Q9NYF8	Q9NYF8	Q9NYF8	BCLAF1	Bcl-2-associated transcription factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	786.656908	2356.94889	1.6688	0.0013128	0.46606	0.00036663	2.1349	0.0016794	786.991662720062	10.135	0.070951	10.135	10.108	10.179	0	483	28	1.00151498427745	0.0181467072344021	1.00151498427745	605.21752231814	0	10.9660917340753						182	9	4	NaN	NaN	NaN	5.3854E-06	1	36110	118.87	118.44	1	33397			22728	3113	19179	19724	22728	22728		
YQGVNLYIK	9	Unmodified	_YQGVNLYIK_			0	0	0	Q13310	Q13310	Q13310	PABPC4	Polyadenylate-binding protein 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	549.303124	1096.5917	1.1695	0.00064242	0.73934	0.00040612	1.9089	0.0010485	549.303555978974	9.6026	0.15076	9.6026	9.5583	9.709	0	567	49	0.944945209309785	0.0323927488942614	0.944945209309785	383.243348357759	0	13.1375929804613						512	18	4	NaN	NaN	NaN	0.00013744	1	6628	93.561	65.856	1	290750			22729	1653	19180	19725	22729	22729		
YQGVNLYVK	9	Unmodified	_YQGVNLYVK_			0	0	0	P11940;Q4VXU2	P11940	P11940	PABPC1;PABPC1L	Polyadenylate-binding protein 1;Polyadenylate-binding protein 1-like	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	542.295299	1082.57605	1.7991	0.00097566	0.97135	0.00052676	2.7705	0.0015024	542.295967605407	8.2366	0.25728	8.2366	8.1567	8.414	0	576	49	0.938871150116794	0.0324062107488191	0.938871150116794	380.841049595839	0	13.1451640765284						653	30	4	NaN	NaN	NaN	0.00016176	1	6276	109.36	89.87	1	411120			22730	661	19181	19726	22730	22730		
YQHTGAVLDCAFYDPTHAWSGGLDHQLK	28	Unmodified	_YQHTGAVLDCAFYDPTHAWSGGLDHQLK_			0	0	0	O43684	O43684	O43684	BUB3	Mitotic checkpoint protein BUB3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	797.622718	3186.46177	1.4727	0.0011747	0.96255	0.00076775	2.4353	0.0019424	797.873908215539	13.283	0.12419	13.283	13.238	13.363	0	432	31	1.035754240522	0.0201171086492766	1.035754240522	833.269296689826	0	16.1843112195876						502	15	7	NaN	NaN	NaN	1.2047E-15	1	38450	116.4	114.34	1	188120			22731	220	19182	19727	22731	22731		
YQIDPDACFSAK	12	Unmodified	_YQIDPDACFSAK_			0	0	0	P21796	P21796	P21796	VDAC1	Voltage-dependent anion-selective channel protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.819009	1413.62347	1.7557	0.0012427	1.9592	0.0013867	3.7148	0.0026294	707.82081008617	9.4696	0.33693	9.4696	9.3898	9.7268	0	480	55	1.00353128488872	0.0362859024304513	1.00353128488872	405.869432389496	0	14.6755151981345						1304	39	5	NaN	NaN	NaN	1.5427E-07	1	15870	117.99	93.864	1	1482600			22732	794	19183	19728	22732	22732		
YQILPLHSQIPR	12	Unmodified	_YQILPLHSQIPR_			0	0	0	Q08211	Q08211	Q08211	DHX9	ATP-dependent RNA helicase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	488.948904	1463.82488	0.034329	1.6785E-05	-0.56748	-0.00027747	-0.53315	-0.00026069	488.948520182652	10.259	0.23055	10.259	10.152	10.383	0	684	46	0.86578508874114	0.0305265242845556	0.86578508874114	525.060863207475	0	18.5130044395636						485	27	3	NaN	NaN	NaN	0.067648	1	17397	26.579	21.083	1	108940			22733	1575	19184	19729	22733	22733		
YQLEIPENFTTR	12	Unmodified	_YQLEIPENFTTR_			0	0	0	P52701	P52701	P52701	MSH6	DNA mismatch repair protein Msh6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	755.880456	1509.74636	1.3507	0.0010209	1.1587	0.00087585	2.5094	0.0018968	755.881253376535	13.398	0.13306	13.398	13.336	13.469	0	417	40	1.04580932352505	0.0261432202901304	1.04580932352505	422.707406924544	0	10.5668716169496						396	16	4	NaN	NaN	NaN	0.00043237	1	18791	79.311	61.841	1	114590			22734	1218	19185	19730	22734	22734		
YQLLQLVEPFGVISNHLILNK	21	Unmodified	_YQLLQLVEPFGVISNHLILNK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.465049	2437.37332	0.15826	0.00012874	-2.5976	-0.002113	-2.4393	-0.0019843	813.796926688202	19.969	0.017751	19.969	19.96	19.978	0	510	25	0.983355730988811	0.0161493714671825	0.983355730988811	594.128980831432	0	9.75721125987377						51	3	4	NaN	NaN	NaN	0.033436	1	36513	11.478	10.227	1	9000.8			22735	1062	19186	19731	22735	22735		
YQLLQLVEPFGVISNHLILNK	21	Unmodified	_YQLLQLVEPFGVISNHLILNK_			0	0	0	P43243	P43243	P43243	MATR3	Matrin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	813.465049	2437.37332	1.1439	0.00093049	-1.1685	-0.00095052	-0.024625	-2.0031E-05	813.798572247981	19.969	0.026603	19.969	19.96	19.986	0	405	136	1.05384839605172	0.0904959625178763	1.05384839605172	636.719600739095	0	54.6763209383435						335	4	4	NaN	NaN	NaN	1.6183E-08	1	36514	104.86	100.02	1	96330			22736	1062	19186	19731	22736	22736		
YQLLVYHADSLFHDK	15	Unmodified	_YQLLVYHADSLFHDK_			0	0	0	Q9UJX3	Q9UJX3	Q9UJX3	ANAPC7	Anaphase-promoting complex subunit 7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	616.980821	1847.92063	0.45768	0.00028238	0.50892	0.00031399	0.9666	0.00059637	617.315531243697	12.378	0.079794	12.378	12.343	12.423	0	606	31	0.918606045818476	0.0202791503902223	0.918606045818476	556.010202624757	0	12.2744832443151						226	10	4	NaN	NaN	NaN	0.0019174	1	28433	47.57	37.549	1	56675			22737	3253	19187	19732	22737	22737		
YQLNLPPYPDTECVYR	16	Unmodified	_YQLNLPPYPDTECVYR_			0	0	0	Q8NCW5	Q8NCW5	Q8NCW5	APOA1BP	NAD(P)H-hydrate epimerase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1014.48021	2026.94586	2.245	0.0022775	-0.73754	-0.00074822	1.5075	0.0015293	1014.47945657485	13.859	0.18622	13.859	13.824	14.01	0	201	64	1.18983705239708	0.0418090604716055	1.18983705239708	479.805762932946	0	16.8596431895228						483	22	3	NaN	NaN	NaN	0.032244	1	32095	50.116	48.528	1	92111			22738	2302	19188	19733	22738	22738		
YQMGDQNVYPGPIDNSGLLK	20	Unmodified	_YQMGDQNVYPGPIDNSGLLK_			0	0	0	Q9Y4E8	Q9Y4E8	Q9Y4E8	USP15	Ubiquitin carboxyl-terminal hydrolase 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1105.03334	2208.05212	1.3845	0.0015299	-2.7157	-0.0030009	-1.3312	-0.001471	1105.53252942656	13.629	0.10643	13.629	13.549	13.655	0	126	49	1.23951419873743	0.0317389054626898	1.23951419873743	499.559255792201	0	12.7916759717241						345	13	4	NaN	NaN	NaN	0.054561	1	34762	13.525	11.554	1	60604			22739	3409	19189	19734	22739	22739		
YQPLASTASDNDFVTPEPR	19	Unmodified	_YQPLASTASDNDFVTPEPR_			0	0	0	Q15021	Q15021	Q15021	NCAPD2	Condensin complex subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1054.50018	2106.98581	2.8356	0.0029902	-1.2705	-0.0013397	1.5652	0.0016505	1054.9996096412	10.942	0.088671	10.942	10.897	10.986	1.7764E-15	198	55	1.1918274123006	0.0358092804160572	1.1918274123006	480.484165750964	0	14.4364796859631						300	11	3	NaN	NaN	NaN	1.8727E-10	1	33416	123.24	104.05	1	52922			22740	1794	19190	19735	22740	22740		
YQQAGLPLIVLAGK	14	Unmodified	_YQQAGLPLIVLAGK_			0	0	0	P21399	P21399	P21399	ACO1	Cytoplasmic aconitate hydratase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	735.937576	1469.8606	1.0923	0.00080389	0.66902	0.00049235	1.7614	0.0012962	735.938125376608	15.81	0.15078	15.81	15.748	15.899	0	393	40	1.0618830335572	0.0261107757546724	1.0618830335572	429.310056250645	0	10.5563590845174						412	18	4	NaN	NaN	NaN	0.0001691	1	17594	90.263	88.619	1	124650			22741	793	19191	19736	22741	22741		
YQQQYLQPLPLTHYELVTDAFGHR	24	Unmodified	_YQQQYLQPLPLTHYELVTDAFGHR_			0	0	0	Q96T37	Q96T37	Q96T37	RBM15	Putative RNA-binding protein 15	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	730.121246	2916.45588	0.059079	4.3135E-05	-1.7757	-0.0012965	-1.7166	-0.0012533	730.368996415613	15.943	0.11526	15.943	15.908	16.023	0	486	22	0.999498404980629	0.0141180070903043	0.999498404980629	804.424773887986	0	11.3625740719287						175	14	3	NaN	NaN	NaN	0.0088858	1	38096	75.969	67.077	1	60647			22742	2628	19192	19737	22742	22742		
YQSFNNQSDLEK	12	Unmodified	_YQSFNNQSDLEK_			0	0	0	P49642	P49642	P49642	PRIM1	DNA primase small subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	736.836245	1471.65794	1.5097	0.0011124	0.15208	0.00011206	1.6618	0.0012245	736.836513289839	5.3455	0.11533	5.3455	5.31	5.4254	0	468	25	1.01159370163332	0.0161226065449527	1.01159370163332	408.973861500774	0	6.51815511059499						139	14	2	NaN	NaN	NaN	0.0034521	1	17632	60.547	55.719	1	38981			22743	1140	19193	19738	22743	22743		
YQSHDYAFSSVEK	13	Unmodified	_YQSHDYAFSSVEK_			0	0	0	Q9UHG3	Q9UHG3	Q9UHG3	PCYOX1	Prenylcysteine oxidase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	780.851895	1559.68924	2.9332	0.0022904	-1.2103	-0.0009451	1.7228	0.0013453	780.85066374792	5.6381	0.1508	5.6381	5.5849	5.7357	0	420	43	1.04379886199097	0.028152295306344	1.04379886199097	421.772054218799	0	11.3756125386863						411	18	5	NaN	NaN	NaN	1.8044E-05	1	20332	95.656	81.201	1	162960			22744	3217	19194	19739	22744	22744		
YQVFFFGTHETAFLGPK	17	Unmodified	_YQVFFFGTHETAFLGPK_			0	0	0	P51858	P51858	P51858	HDGF	Hepatoma-derived growth factor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	663.668355	1987.98323	-0.10714	-7.1107E-05	-0.50682	-0.00033636	-0.61396	-0.00040746	664.002350570306	15.837	0.18624	15.837	15.801	15.987	0	630	115	0.902373728295776	0.0769968520990783	0.902373728295776	545.898675368675	0	46.579901708605						469	22	2	NaN	NaN	NaN	0.00012432	1	31422	81.48	59.476	1	240600			22745	1201	19195	19740	22745	22745		
YQVSWSLDHK	10	Unmodified	_YQVSWSLDHK_			0	0	0	P51571	P51571	P51571	SSR4	Translocon-associated protein subunit delta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	421.543655	1261.60914	-1.0933	-0.00046086	-0.7647	-0.00032236	-1.858	-0.00078322	421.543397009673	8.1036	0.18632	8.1036	8.0591	8.2454	0	837	40	0.761618911097395	0.0266520851211307	0.761618911097395	462.580135293615	0	16.1875249702315						490	22	4	NaN	NaN	NaN	0.0062238	1	11263	62.969	48.974	1	269560			22746	1190	19196	19741	22746	22746		
YQWGIMK	7	Unmodified	_YQWGIMK_			0	0	0	Q9P2J5	Q9P2J5	Q9P2J5	LARS	Leucine--tRNA ligase, cytoplasmic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	463.233656	924.452759	-0.55392	-0.0002566	-1.053	-0.0004878	-1.607	-0.0007444	463.233442475953	9.7534	0.23941	9.7534	9.6558	9.8952	0	759	52	0.814815566123307	0.0347074776286075	0.814815566123307	331.228902656263	0	14.1088612035068						468	28	3	NaN	NaN	NaN	0.014501	1	2781	61.494	48.942	1	107380			22747	3161	19197	19742	22747	22747		
YRCELLYEGPPDDEAAMGIK	20	Unmodified	_YRCELLYEGPPDDEAAMGIK_			0	0	1	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	776.360933	2326.06097	0.54053	0.00041965	0.2189	0.00016994	0.75943	0.00058959	776.695696922294	12.032	0.15963	12.032	11.979	12.139	0	576	64	0.938871150116794	0.0425184363686346	0.938871150116794	567.405859737872	0	25.695975363024						885	19	5	NaN	NaN	NaN	1.8288E-07	1	35864	78.673	76.283	1	203530			22748	679	19198	19743	22748	22748		
YREEEMTVVEEADDDKK	17	Unmodified	_YREEEMTVVEEADDDKK_			0	0	2	Q8WYA6	Q8WYA6	Q8WYA6	CTNNBL1	Beta-catenin-like protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	695.980886	2084.92083	1.1793	0.00082077	0.74552	0.00051887	1.9248	0.0013396	696.315785140291	5.8864	0.1154	5.8864	5.8509	5.9663	0	522	25	0.975277694896658	0.0161605431921971	0.975277694896658	589.812485117783	0	9.7733088646645						142	14	3	NaN	NaN	NaN	0.00021547	1	33095	65.12	59.505	1	35850			22749	2400	19199	19744	22749	22749		
YSAVDTNPLSLYVMHPFWNTIVK	23	Unmodified	_YSAVDTNPLSLYVMHPFWNTIVK_			0	0	0	Q9C0D9	Q9C0D9	Q9C0D9	EPT1	Ethanolaminephosphotransferase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	899.124475	2694.35159	1.1383	0.0010235	-3.3376	-0.0030009	-2.1993	-0.0019775	899.455506274313	19.738	0.053204	19.738	19.712	19.765	0	384	46	1.06790610341098	0.0301112043248537	1.06790610341098	644.86417124139	0	18.1829064933756						191	7	4	NaN	NaN	NaN	0.00063939	1	37591	45.826	45.676	1	33365			22750	2822	19200	19745	22750	22750		
YSCFALFVK	9	Unmodified	_YSCFALFVK_			0	0	0	P78527	P78527	P78527	PRKDC	DNA-dependent protein kinase catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	567.786253	1133.55795	0.37375	0.00021221	-1.2229	-0.00069435	-0.84916	-0.00048214	567.785387639914	13.664	0.17733	13.664	13.611	13.788	0	621	43	0.908462957275599	0.0284104988036308	0.908462957275599	368.298029868542	0	11.5178397238552						540	21	4	NaN	NaN	NaN	0.0036061	1	7628	69.905	63.674	1	172730			22751	1465	19201	19746	22751	22751		
YSDDTPLPTPSYK	13	Unmodified	_YSDDTPLPTPSYK_			0	0	0	Q92620	Q92620	Q92620	DHX38	Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.351197	1482.68784	1.2955	0.00096172	1.5604	0.0011584	2.8559	0.0021201	742.352325540392	8.6891	0.15971	8.6891	8.5559	8.7156	0	462	31	1.01562323939346	0.0201449080035752	1.01562323939346	410.574491730161	0	8.14375355319578						212	19	2	NaN	NaN	NaN	0.0053184	1	17986	40.533	34.667	1	43544			22752	2421	19202	19747	22752	22752		
YSDESGNMDFDNFISCLVR	19	Unmodified	_YSDESGNMDFDNFISCLVR_			0	0	0	P04632	P04632	P04632	CAPNS1	Calpain small subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1134.98044	2267.94633	1.041	0.0011815	-0.044484	-5.0488E-05	0.99648	0.001131	1135.48256392233	19.658	0.053204	19.658	19.632	19.685	0	150	34	1.22363604450103	0.0218489376756466	1.22363604450103	493.078460250527	0	8.80428506142175						178	7	4	NaN	NaN	NaN	2.6159E-05	1	35349	58.338	56.863	1	33810			22753	515	19203	19748	22753	22753		
YSDFEWLR	8	Unmodified	_YSDFEWLR_			0	0	0	O60493	O60493	O60493	SNX3	Sorting nexin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	558.261456	1114.50836	0.21788	0.00012163	-1.05	-0.00058615	-0.83209	-0.00046452	558.260825596646	13.283	0.16852	13.283	13.23	13.398	0	645	46	0.892219381832517	0.0304841838877806	0.892219381832517	361.787036390454	0	12.3610658657627						475	20	4	NaN	NaN	NaN	0.0029902	1	7102	85.813	77.05	1	217990			22754	261	19204	19749	22754	22754		
YSDIDIILLK	10	Unmodified	_YSDIDIILLK_			0	0	0	Q92973	Q92973	Q92973	TNPO1	Transportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	596.844822	1191.67509	1.0484	0.00062572	1.9372	0.0011562	2.9856	0.0017819	596.846488385195	15.562	0.27489	15.562	15.508	15.783	0	567	67	0.944945209309785	0.0445277082686212	0.944945209309785	382.86362501904	0	18.0412997849547						865	32	5	NaN	NaN	NaN	0.00015055	1	9216	98.009	75.623	1	535470			22755	2448	19205	19750	22755	22755		
YSDIEPSTEGEVIFR	15	Unmodified	_YSDIEPSTEGEVIFR_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.417599	1740.82065	1.8211	0.0015869	0.022996	2.0039E-05	1.8441	0.001607	872.419557898441	12.05	0.21285	12.05	11.988	12.201	0	327	142	1.10599442759226	0.0942836441398447	1.10599442759226	446.49424729158	0	38.0626734383935						712	18	4	NaN	NaN	NaN	0.062388	1	25622	40.861	25.886	1	184000			22756	570	19206	19751	22756	22756		
YSDIEPSTEGEVIFR	15	Unmodified	_YSDIEPSTEGEVIFR_			0	0	0	P07942	P07942	P07942	LAMB1	Laminin subunit beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	871.417599	1740.82065	1.5141	0.0013194	2.8201	0.0024575	4.3342	0.0037769	871.919969605847	12.05	0.12416	12.05	11.988	12.112	0	267	34	1.14597988355104	0.0219662910275218	1.14597988355104	462.636520973326	0	8.8678768323316						220	15	4	NaN	NaN	NaN	0.0040418	1	25623	71.896	62.634	1	46389			22757	570	19206	19751	22757	22757		
YSDLTTLVAFPSSSVYPTK	19	Unmodified	_YSDLTTLVAFPSSSVYPTK_			0	0	0	P25205	P25205	P25205	MCM3	DNA replication licensing factor MCM3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1038.53042	2075.04629	1.0459	0.0010862	-0.103	-0.00010697	0.94286	0.00097919	1039.03204520827	16.484	0.18617	16.484	16.431	16.617	0	141	85	1.2295923935727	0.0555888301691121	1.2295923935727	495.759039601427	0	22.4128460791234						961	22	6	NaN	NaN	NaN	4.5972E-11	1	32946	105.78	95.758	1	397170			22758	835	19207	19752	22758	22758		
YSDMIVAAIQAEK	13	Unmodified	_YSDMIVAAIQAEK_			0	0	0	P07305	P07305	P07305	H1F0	Histone H1.0;Histone H1.0, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	719.86596	1437.71737	1.7511	0.0012606	0.47962	0.00034526	2.2307	0.0016058	719.866350909563	13.079	0.14188	13.079	13.034	13.176	0	315	52	1.11400032671325	0.0340321108810946	1.11400032671325	450.47451439917	0	13.7617541534941						432	17	4	NaN	NaN	NaN	4.1199E-05	1	16610	78.043	72.547	1	129800			22759	555	19208	19753	22759	22759		
YSEEANNLIEECEQAER	17	Unmodified	_YSEEANNLIEECEQAER_			0	0	0	Q96HE7	Q96HE7	Q96HE7	ERO1L	ERO1-like protein alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1042.44729	2082.88003	2.0893	0.002178	-0.22236	-0.0002318	1.8669	0.0019462	1042.94859647972	9.5849	0.14187	9.5849	9.5317	9.6736	0	213	82	1.18187287897418	0.0537692917232429	1.18187287897418	476.507107718182	0	21.6786848559686						678	17	5	NaN	NaN	NaN	4.2476E-10	1	33068	130.78	117.56	1	187420			22760	2549	19209	19754	22760	22760		
YSEEGVYNVQYSFIK	15	Unmodified	_YSEEGVYNVQYSFIK_			0	0	0	Q9NUJ1	Q9NUJ1	Q9NUJ1	ABHD10	Mycophenolic acid acyl-glucuronide esterase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	913.435792	1824.85703	1.3663	0.001248	4.8253	0.0044076	6.1916	0.0056557	913.942073027035	13.203	0.053196	13.203	13.176	13.23	0	285	25	1.13399579921816	0.015985375365998	1.13399579921816	457.631896225932	0	6.45100947081875						82	7	3	NaN	NaN	NaN	0.039573	1	27848	47.915	41.887	1	18230			22761	3050	19210	19755	22761	22761		
YSEFLPSMQSAQGLITQVDK	20	Unmodified	_YSEFLPSMQSAQGLITQVDK_			0	0	0	O43264	O43264	O43264	ZW10	Centromere/kinetochore protein zw10 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1121.55664	2241.09873	0.64385	0.00072211	0.75296	0.00084449	1.3968	0.0015666	1121.5576054091	17.14	0.13297	17.14	17.087	17.22	0	99	55	1.25735632164274	0.035676922009668	1.25735632164274	506.703399586912	0	14.3774818306694						385	16	3	NaN	NaN	NaN	0.0018786	1	35110	39.587	35.737	1	69895			22762	193	19211	19756	22762	22762		
YSEGEIR	7	Unmodified	_YSEGEIR_			0	0	0	Q9Y5K5	Q9Y5K5	Q9Y5K5	UCHL5	Ubiquitin carboxyl-terminal hydrolase isozyme L5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	427.20615	852.397747	0.23946	0.0001023	2.7235	0.0011635	2.963	0.0012658	427.20753439881	2.9779	0.133	2.9779	2.9513	3.0843	0	768	58	0.808687310729125	0.0387961087327446	0.808687310729125	329.144279968583	0	15.790426169676						222	16	2	NaN	NaN	NaN	0.032483	1	1593	42.229	34.225	1	47275			22763	3434	19212	19757	22763	22763		
YSEGYPGK	8	Unmodified	_YSEGYPGK_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	450.708525	899.402498	-0.38348	-0.00017284	1.5106	0.00068085	1.1272	0.00050802	450.709026403657	2.8981	0.29261	2.8981	2.8538	3.1464	0	801	31	0.78619514174348	0.0204630863651483	0.78619514174348	319.724770449937	0	8.3217960063775						437	34	3	NaN	NaN	NaN	0.012201	1	2306	67.903	32.269	1	125110			22764	954	19213	19758	22764	22764		
YSELTTVQQQLIR	13	Unmodified	_YSELTTVQQQLIR_			0	0	0	O43592	O43592	O43592	XPOT	Exportin-T	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	789.927937	1577.84132	1.0929	0.00086328	-0.92544	-0.00073103	0.16742	0.00013225	789.927236737644	11.997	0.14188	11.997	11.953	12.094	0	375	55	1.07392668217569	0.0361259765549562	1.07392668217569	433.901991843753	0	14.596092493707						402	17	3	NaN	NaN	NaN	9.9345E-08	1	20916	135.28	122.11	1	138510			22765	209	19214	19759	22765	22765		
YSESLLCSNLESATYSNR	18	Unmodified	_YSESLLCSNLESATYSNR_			0	0	0	Q15785	Q15785	Q15785	TOMM34	Mitochondrial import receptor subunit TOM34	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1047.47585	2092.93715	1.9727	0.0020664	-0.19249	-0.00020163	1.7802	0.0018648	1047.97685937008	12.103	0.14191	12.103	12.05	12.192	0	180	52	1.203763835057	0.0338129115877068	1.203763835057	485.317650399586	0	13.6322444045992						535	17	4	NaN	NaN	NaN	8.5573E-16	1	33229	141.88	128.53	1	138120			22766	1867	19215	19760	22766	22766		
YSESLLGVPIAYDNIK	16	Unmodified	_YSESLLGVPIAYDNIK_			0	0	0	Q3B726	Q3B726	Q3B726	TWISTNB	DNA-directed RNA polymerase I subunit RPA43	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	891.469635	1780.92472	1.3727	0.0012237	0.70087	0.00062481	2.0736	0.0018485	891.470098150288	15.952	0.079793	15.952	15.925	16.005	0	261	70	1.14997238118939	0.0459169083638418	1.14997238118939	464.165712686767	0	18.5335359733006						383	10	3	NaN	NaN	NaN	7.1629E-05	1	26711	114.93	106.56	1	74370			22767	1930	19216	19761	22767	22767		
YSEVFEAINITNNEK	15	Unmodified	_YSEVFEAINITNNEK_			0	0	0	P68400;Q8NEV1	P68400	P68400	CSNK2A1;CSNK2A3	Casein kinase II subunit alpha;Casein kinase II subunit alpha 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	885.930874	1769.84719	1.9947	0.0017672	-2.6604	-0.0023569	-0.66565	-0.00058972	886.431702532984	13.309	0.16849	13.309	13.212	13.38	0	318	34	1.11199926528787	0.0220086485817799	1.11199926528787	448.860260766378	0	8.88382578110424						174	20	2	NaN	NaN	NaN	0.00019692	1	26402	101.64	98.928	1	56100			22768	1450	19217	19762	22768	22768		
YSEVFEAINITNNER	15	Unmodified	_YSEVFEAINITNNER_			0	0	0	P19784	P19784	P19784	CSNK2A2	Casein kinase II subunit alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	899.933948	1797.85334	2.1555	0.0019398	-0.49013	-0.00044109	1.6653	0.0014987	900.434583972022	13.558	0.11529	13.558	13.522	13.637	0	183	31	1.20177511391933	0.0198913087124573	1.20177511391933	485.039671879166	0	8.02818575571297						276	14	4	NaN	NaN	NaN	1.1231E-11	1	27158	160.62	146.26	1	65990			22769	772	19218	19763	22769	22769		
YSGAYGASVSDEELK	15	Unmodified	_YSGAYGASVSDEELK_			0	0	0	Q9NX63	Q9NX63	Q9NX63	CHCHD3	MICOS complex subunit MIC19	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	788.362293	1574.71003	2.6822	0.0021145	-0.63404	-0.00049985	2.0481	0.0016147	788.361761380333	7.2964	0.2394	7.2964	7.2432	7.4826	0	393	61	1.0618830335572	0.0401732058727873	1.0618830335572	429.043379706051	0	16.2315881096138						843	28	5	NaN	NaN	NaN	5.5261E-24	1	20808	209.43	183.57	1	386300			22770	3100	19219	19764	22770	22770		
YSGSEGSTQTLTK	13	Unmodified	_YSGSEGSTQTLTK_			0	0	0	P25815	P25815	P25815	S100P	Protein S100-P	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	679.825346	1357.63614	2.5078	0.0017049	-1.1863	-0.00080645	1.3216	0.00089843	679.82455758231	3.2439	0.21279	3.2439	3.2173	3.4301	0	603	76	0.920633820089869	0.050638233668732	0.920633820089869	372.491018448565	0	20.4883709680155						896	25	4	NaN	NaN	NaN	7.2716E-24	1	14125	208.03	160.68	1	274060			22771	845	19220	19765	22771	22771		
YSGSYNDYLR	10	Unmodified	_YSGSYNDYLR_			0	0	0	Q96PK6	Q96PK6	Q96PK6	RBM14	RNA-binding protein 14	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	619.277835	1236.54112	1.5051	0.00093205	3.168	0.0019618	4.673	0.0028939	619.278915182499	7.4915	0.11527	7.4915	7.4028	7.5181	0	585	34	0.932794566565362	0.0222838959578864	0.932794566565362	377.783546966391	0	9.02501960983545						306	14	5	NaN	NaN	NaN	3.9634E-05	1	10508	114.64	88.182	1	174310			22772	2596	19221	19766	22772	22772		
YSGTLNLDR	9	Unmodified	_YSGTLNLDR_			0	0	0	P49327	P49327	P49327	FASN	Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	519.764363	1037.51417	0.94101	0.0004891	0.59858	0.00031112	1.5396	0.00080022	519.764798012373	6.25	0.31038	6.25	6.2057	6.5161	0	687	61	0.863749705078866	0.0407105191878504	0.863749705078866	350.560150075466	0	16.5227097991772						697	36	4	NaN	NaN	NaN	9.0472E-07	1	5179	141.93	117.08	1	515920			22773	1127	19222	19767	22773	22773		
YSGVNQSMLFDK	12	Unmodified	_YSGVNQSMLFDK_			0	0	0	Q6PL18	Q6PL18	Q6PL18	ATAD2	ATPase family AAA domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	694.829377	1387.6442	1.1641	0.00080883	0.45871	0.00031873	1.6228	0.0011276	694.829825540844	10.037	0.12412	10.037	9.9839	10.108	0	519	28	0.97729762293174	0.0181768396345002	0.97729762293174	395.331149584995	0	7.35279687570772						223	15	3	NaN	NaN	NaN	1.06E-07	1	15067	136.94	111.69	1	50751			22774	2080	19223	19768	22774	22774		
YSHEVLSEENFK	12	Unmodified	_YSHEVLSEENFK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	494.568418	1480.68342	-0.094813	-4.6892E-05	-0.12408	-6.1365E-05	-0.21889	-0.00010826	494.568171692121	6.2234	0.07095	6.2234	6.1968	6.2678	0	711	22	0.847456455381371	0.0142655083494234	0.847456455381371	513.890624812886	0	8.65048693936683						100	9	2	NaN	NaN	NaN	0.0086894	1	17913	61.48	57.872	1	35149			22775	2129	19224	19769	22775	22775		
YSHEVLSEENFK	12	Unmodified	_YSHEVLSEENFK_			0	0	0	Q7Z2W4	Q7Z2W4	Q7Z2W4	ZC3HAV1	Zinc finger CCCH-type antiviral protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.348988	1480.68342	1.7232	0.0012775	-1.6844	-0.0012488	0.038708	2.8696E-05	741.348135688825	6.2234	0.16851	6.2234	6.1614	6.3299	0	462	31	1.01562323939346	0.02014212547595	1.01562323939346	410.579643363595	0	8.14273086094329						324	20	4	NaN	NaN	NaN	0.00064538	1	17915	86.243	72.969	1	108670			22776	2129	19224	19769	22776	22776		
YSHLQPGDHLTDITLK	16	Unmodified	_YSHLQPGDHLTDITLK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	613.319614	1836.93701	0.25505	0.00015643	-0.26231	-0.00016088	-0.0072582	-4.4516E-06	613.319467306455	8.7156	0.18642	8.7156	8.6712	8.8576	0	696	94	0.857641857947968	0.0631144927772057	0.857641857947968	519.13314490534	0	38.2033885367148						828	22	5	NaN	NaN	NaN	1.5653E-09	1	28159	146.34	130.21	1	361030			22777	1801	19225	19770	22777	22777		
YSHLQPGDHLTDITLK	16	Unmodified	_YSHLQPGDHLTDITLK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	460.24153	1836.93701	-0.030342	-1.3965E-05	0.47182	0.00021715	0.44147	0.00020319	460.241722582011	8.7156	0.15983	8.7156	8.6712	8.831	0	702	43	0.853568545818287	0.0285211140004684	0.853568545818287	688.887245990635	0	23.0184579464933						589	19	5	NaN	NaN	NaN	0.035301	1	28160	56.938	52.955	1	384630			22778	1801	19225	19770	22778	22778		
YSHLQPGDHLTDITLK	16	Unmodified	_YSHLQPGDHLTDITLK_			0	0	0	Q15046	Q15046	Q15046	KARS	Lysine--tRNA ligase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	919.475783	1836.93701	2.3063	0.0021206	-1.4966	-0.0013761	0.8097	0.0007445	919.975935262108	8.7068	0.0799	8.7068	8.68	8.7599	0	258	49	1.15196821829984	0.0319399906194668	1.15196821829984	464.861752555935	0	12.888966709428						300	10	4	NaN	NaN	NaN	1.5555E-05	1	28161	57.042	45.024	1	62802			22779	1801	19225	19770	22779	22779		
YSIAITWGGHHIPK	14	Unmodified	_YSIAITWGGHHIPK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	527.284175	1578.8307	0.050041	2.6386E-05	-1.1556	-0.00060932	-1.1055	-0.00058294	527.283402546454	9.7445	0.25714	9.7445	9.5938	9.8509	0	711	34	0.847456455381371	0.0224203443559257	0.847456455381371	513.595119044809	0	13.5876945126641						420	30	3	NaN	NaN	NaN	0.020205	1	20942	45.939	39.912	1	80605			22780	326	19226	19771	22780	22780		
YSIDQEFLK	9	Unmodified	_YSIDQEFLK_			0	0	0	Q9BYT8	Q9BYT8	Q9BYT8	NLN	Neurolysin, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	571.790047	1141.56554	0.94415	0.00053986	-2.9182	-0.0016686	-1.9741	-0.0011288	571.790377145363	11.252	0.17739	11.252	11.199	11.376	0	609	37	0.916577990479294	0.0243383549190614	0.916577990479294	371.556613454531	0	9.86612904162376						292	21	3	NaN	NaN	NaN	0.037683	1	7830	48.157	26.883	1	133630			22781	2804	19227	19772	22781	22781		
YSIWCSTEHGNK	12	Unmodified	_YSIWCSTEHGNK_			0	0	0	Q7Z739;Q9BYJ9	Q7Z739	Q7Z739	YTHDF3;YTHDF1	YTH domain-containing family protein 3;YTH domain-containing family protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.327533	1480.64051	1.8538	0.0013742	-0.33456	-0.00024802	1.5192	0.0011262	741.829379525228	5.9219	0.23061	5.9219	5.8421	6.0727	0	471	49	1.00957851518677	0.0322630489708209	1.00957851518677	408.136084992883	0	13.0427839923361						447	27	4	NaN	NaN	NaN	0.0058009	1	17909	40.533	36.005	1	101950			22782	2150	19228	19773	22782	22782		
YSLEPVAVELK	11	Unmodified	_YSLEPVAVELK_			0	0	0	P00558	P00558	P00558	PGK1	Phosphoglycerate kinase 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	624.347729	1246.6809	1.2814	0.00080004	0.59634	0.00037232	1.8777	0.0011724	624.348391518377	12.414	0.16844	12.414	12.352	12.52	0	555	70	0.953040030838688	0.0465355872308373	0.953040030838688	385.948345855926	0	18.8453079975775						861	20	5	NaN	NaN	NaN	2.3708E-07	1	10836	129.28	82.834	1	959370			22783	484	19229	19774	22783	22783		
YSLIVAQHVEK	11	Unmodified	_YSLIVAQHVEK_			0	0	0	Q13439	Q13439	Q13439	GOLGA4	Golgin subfamily A member 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	643.858795	1285.70304	1.9472	0.0012537	0.023612	1.5202E-05	1.9708	0.0012689	643.858920298125	6.8087	0.079771	6.8087	6.7732	6.853	0	441	28	1.02971785871157	0.0181141482765854	1.02971785871157	416.861567121282	0	7.33316623943273						142	10	3	NaN	NaN	NaN	0.00046011	1	11940	108.93	93.347	1	34335			22784	1668	19230	19775	22784	22784		
YSLRDEFPLLTTK	13	Unmodified	_YSLRDEFPLLTTK_			0	0	1	P04818	P04818	P04818	TYMS	Thymidylate synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.287363	1581.84026	-1.7571	-0.00092825	-1.0625	-0.00056133	-2.8196	-0.0014896	528.287000074589	14.329	0.22166	14.329	14.187	14.409	0	777	25	0.802556497112065	0.0163522499663766	0.802556497112065	486.375773700185	0	9.9100041651331						271	26	3	NaN	NaN	NaN	0.0055274	1	21028	55.578	47.577	1	53188			22785	517	19231	19776	22785	22785		
YSLVSEQLEPAATSTYR	17	Unmodified	_YSLVSEQLEPAATSTYR_			0	0	0	Q9Y446	Q9Y446	Q9Y446	PKP3	Plakophilin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	957.975812	1913.93707	2.1417	0.0020517	-2.4889	-0.0023843	-0.3472	-0.00033261	957.973630565233	11.403	0.097567	11.403	11.35	11.447	0	258	49	1.15196821829984	0.0319355989061636	1.15196821829984	464.721572628875	0	12.8833083332985						305	12	3	NaN	NaN	NaN	0.065953	1	29928	36.181	29.435	1	66836			22786	3403	19232	19777	22786	22786		
YSNDPVVASLAQDIFK	16	Unmodified	_YSNDPVVASLAQDIFK_			0	0	0	Q96P70	Q96P70	Q96P70	IPO9	Importin-9	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	883.951609	1765.88867	1.8422	0.0016284	-0.44672	-0.00039488	1.3955	0.0012335	883.951641514025	18.523	0.17741	18.523	18.435	18.612	0	309	46	1.11800162319566	0.0300035355206882	1.11800162319566	451.290977718593	0	12.1111853500201						572	21	4	NaN	NaN	NaN	1.6055E-12	1	26294	167.59	130.09	1	167770			22787	2594	19233	19778	22787	22787		
YSNEDTLSVALPYFWEHFDK	20	Unmodified	_YSNEDTLSVALPYFWEHFDK_			0	0	0	P26641	P26641	P26641	EEF1G	Elongation factor 1-gamma	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	821.04974	2460.12739	0.097657	8.0181E-05	-0.24461	-0.00020084	-0.14696	-0.00012066	821.383842336206	19.091	0.13299	19.091	19.038	19.171	0	570	175	0.942920803299286	0.117196822347787	0.942920803299286	569.668924547592	0	70.8048730218419						1810	16	6	NaN	NaN	NaN	2.0536E-22	1	36625	184.31	178.2	1	480650			22788	859	19234	19779	22788	22788		
YSNENLDLAR	10	Unmodified	_YSNENLDLAR_			0	0	0	P36776	P36776	P36776	LONP1	Lon protease homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	597.791109	1193.56767	0.94305	0.00056375	2.7278	0.0016306	3.6708	0.0021944	597.792933103786	6.3387	0.15077	6.3387	6.2678	6.4185	0	603	28	0.920633820089869	0.0182524998058907	0.920633820089869	373.006601852763	0	7.39523443452129						176	18	3	NaN	NaN	NaN	7.1859E-05	1	9252	100.84	78.45	1	104880			22789	990	19235	19780	22789	22789		
YSNSALGHVNCTIK	14	Unmodified	_YSNSALGHVNCTIK_			0	0	0	Q9NQC3	Q9NQC3	Q9NQC3	RTN4	Reticulon-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.382839	1562.75113	2.1741	0.001701	-1.246	-0.00097484	0.92815	0.00072616	782.382357585646	5.5051	0.097527	5.5051	5.4785	5.576	0	414	37	1.04781950764076	0.0241238779184587	1.04781950764076	423.389393256037	0	9.74766547139018						233	12	4	NaN	NaN	NaN	0.00013573	1	20436	82.437	77.286	1	57807			22790	2999	19236	19781	22790	22790		
YSNSALGHVNCTIK	14	Unmodified	_YSNSALGHVNCTIK_			0	0	0	Q9NQC3	Q9NQC3	Q9NQC3	RTN4	Reticulon-4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	521.924318	1562.75113	0.31627	0.00016507	2.9383	0.0015336	3.2546	0.0016987	522.261127550641	5.4962	0.079753	5.4962	5.4697	5.5494	0	702	28	0.853568545818287	0.018336272903194	0.853568545818287	517.345508921716	0	11.1135637358055						138	10	3	NaN	NaN	NaN	0.001406	1	20441	40.861	33.721	1	40515			22791	2999	19236	19781	22791	22791		
YSQFINFPIYVWSSK	15	Unmodified	_YSQFINFPIYVWSSK_			0	0	0	P14625	P14625	P14625	HSP90B1	Endoplasmin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	939.974887	1877.93522	1.0489	0.00098592	0.97567	0.00091711	2.0245	0.001903	940.476685199935	19.126	0.28371	19.126	19.064	19.348	0	246	82	1.1599488233373	0.0538654267242249	1.1599488233373	468.005622353867	0	21.7331334367818						1105	33	6	NaN	NaN	NaN	1.4844E-06	1	29101	115.79	98.06	1	443460			22792	700	19237	19782	22792	22792		
YSQLVVETIR	10	Unmodified	_YSQLVVETIR_			0	0	0	Q92522	Q92522	Q92522	H1FX	Histone H1x	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	604.337695	1206.66084	0.86861	0.00052493	-0.36509	-0.00022064	0.50352	0.0003043	604.337359914086	9.5583	0.13302	9.5583	9.5051	9.6381	0	561	103	0.948993180460448	0.0688156045560857	0.948993180460448	384.449092278145	0	27.8780683053197						773	16	3	NaN	NaN	NaN	0.0008619	1	9655	78.816	6.4509	1	250510			22793	2406	19238	19783	22793	22793		
YSQTGNYELAVALSR	15	Unmodified	_YSQTGNYELAVALSR_			0	0	0	P39656	P39656	P39656	DDOST	Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.420476	1670.8264	1.8826	0.0015746	-1.4192	-0.0011871	0.46335	0.00038756	836.921483482419	11.811	0.1862	11.811	11.642	11.828	0	366	58	1.07994477139643	0.0380830760737314	1.07994477139643	436.122167974241	0	15.3793732238062						383	22	3	NaN	NaN	NaN	0.00018273	1	23646	83.474	77.098	1	93508			22794	1011	19239	19784	22794	22794		
YSQVLANGLDNK	12	Unmodified	_YSQVLANGLDNK_			0	0	0	P62269	P62269	P62269	RPS18	40S ribosomal protein S18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	661.340966	1320.66738	1.2921	0.0008545	0.39528	0.00026142	1.6873	0.0011159	661.341582196515	7.0747	0.14197	7.0747	7.0214	7.1634	0	501	49	0.98941132619024	0.032289819448596	0.98941132619024	400.431504527549	0	13.0682362738974						574	17	4	NaN	NaN	NaN	0.015997	1	13002	46.033	38.882	1	302550			22795	1378	19240	19785	22795	22795		
YSSEVATESPLDFTK	15	Unmodified	_YSSEVATESPLDFTK_			0	0	0	Q8WTT2	Q8WTT2	Q8WTT2	NOC3L	Nucleolar complex protein 3 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	837.398875	1672.7832	1.7685	0.0014809	0.75268	0.00063029	2.5212	0.0021112	837.400238554807	11.651	0.22174	11.651	11.562	11.784	0	366	52	1.07994477139643	0.0341025169247675	1.07994477139643	436.117963915579	0	13.7717415182213						489	26	4	NaN	NaN	NaN	4.2513E-08	1	23685	136.06	131.53	1	122420			22796	2361	19241	19786	22796	22796		
YSSQDADEQDWEFQK	15	Unmodified	_YSSQDADEQDWEFQK_			0	0	0	Q9C0C2	Q9C0C2	Q9C0C2	TNKS1BP1	182 kDa tankyrase-1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	938.387027	1874.7595	2.2147	0.0020783	-0.63146	-0.00059256	1.5833	0.0014857	938.386508108543	8.7334	0.088778	8.7334	8.6979	8.7866	0	318	49	1.11199926528787	0.0320103814139743	1.11199926528787	448.664948478509	0	12.9154187203173						313	11	4	NaN	NaN	NaN	4.5935E-12	1	29028	144.2	140.91	1	64034			22797	2819	19242	19787	22797	22797		
YSTDVSVDEVK	11	Unmodified	_YSTDVSVDEVK_			0	0	0	P00367;P49448	P00367	P00367	GLUD1;GLUD2	Glutamate dehydrogenase 1, mitochondrial;Glutamate dehydrogenase 2, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	621.298433	1240.58231	1.6867	0.0010479	1.1121	0.00069092	2.7987	0.0017388	621.298950885198	6.6047	0.17736	6.6047	6.5338	6.7111	0	570	43	0.942920803299286	0.0283436532440857	0.942920803299286	381.870965573911	0	11.4788200603266						456	21	4	NaN	NaN	NaN	6.39E-06	1	10630	124.81	99.955	1	239770			22798	472	19243	19788	22798	22798		
YSVDIPLDK	9	Unmodified	_YSVDIPLDK_			0	0	0	P61353	P61353	P61353	RPL27	60S ribosomal protein L27	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	525.279315	1048.54408	0.66702	0.00035037	0.022429	1.1781E-05	0.68945	0.00036215	525.279492974362	10.33	0.33696	10.33	10.241	10.578	0	693	91	0.85967808974117	0.0610319114578003	0.85967808974117	348.859586552368	0	24.7669071152894						1379	39	5	NaN	NaN	NaN	3.7206E-05	1	5435	137.84	112.99	1	1919400			22799	1343	19244	19789	22799	22799		
YSVEVAASTGAGSGVK	16	Unmodified	_YSVEVAASTGAGSGVK_			0	0	0	Q9Y6N7	Q9Y6N7	Q9Y6N7	ROBO1	Roundabout homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	741.87537	1481.73619	2.1902	0.0016248	0.64123	0.00047571	2.8314	0.0021006	741.87615288081	6.658	0.088667	6.658	6.6402	6.7289	0	345	19	1.09397730668811	0.01202043207265	1.09397730668811	442.252432299234	0	4.85939268476318						87	11	3	NaN	NaN	NaN	0.00020023	1	17965	52.863	49.255	1	14608			22800	3474	19245	19790	22800	22800		
YSVQLLTPANLLAK	14	Unmodified	_YSVQLLTPANLLAK_			0	0	0	Q9Y265	Q9Y265	Q9Y265	RUVBL1	RuvB-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	765.948141	1529.88173	1.4078	0.0010783	0.97027	0.00074318	2.3781	0.0018215	765.948907206855	16.502	0.16847	16.502	16.44	16.608	0	381	58	1.06991323971056	0.0381198356201773	1.06991323971056	432.3983000515	0	15.4058773259655						815	20	5	NaN	NaN	NaN	4.0789E-17	1	19446	187.85	172.7	1	412680			22801	3331	19246	19791	22801	22801		
YSVQTADHR	9	Unmodified	_YSVQTADHR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	538.759612	1075.50467	1.9072	0.0010275	-0.98773	-0.00053215	0.91945	0.00049536	538.759293396316	2.3217	0.17733	2.3217	2.2419	2.4193	0	690	31	0.86171403876517	0.0203580790440647	0.86171403876517	349.57214218713	0	8.25867629178555						242	21	3	NaN	NaN	NaN	9.9963E-05	1	6093	106.93	92.391	1	59574			22802	1898	19247	19792	22802	22802		
YSVQTADHR	9	Unmodified	_YSVQTADHR_			0	0	0	Q16658	Q16658	Q16658	FSCN1	Fascin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	359.508834	1075.50467	0.31028	0.00011155	1.158	0.00041632	1.4683	0.00052786	359.509159745447	2.3306	0.11527	2.3306	2.304	2.4193	0	912	16	0.710286213408253	0.0102837354304258	0.710286213408253	432.208338119588	0	6.25764109754897						107	14	2	NaN	NaN	NaN	0.042403	1	6094	33.396	21.329	1	24260			22803	1898	19247	19792	22803	22803		
YSYLQQDLPDNPER	14	Unmodified	_YSYLQQDLPDNPER_			0	0	0	P14373	P14373	P14373	TRIM27	Zinc finger protein RFP	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	869.407566	1736.80058	2.5823	0.0022451	-1.7603	-0.0015304	0.82207	0.00071471	869.907513917152	9.8952	0.11525	9.8952	9.842	9.9573	0	357	37	1.08596037261705	0.0240574350512286	1.08596037261705	438.414444575126	0	9.71225773226803						295	14	3	NaN	NaN	NaN	0.0066539	1	25507	29.98	25.674	1	59691			22804	696	19248	19793	22804	22804		
YSYVCPDLVK	10	Unmodified	_YSYVCPDLVK_			0	0	0	P61158	P61158	P61158	ACTR3	Actin-related protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	622.305007	1242.59546	1.4979	0.00093215	1.964	0.0012222	3.4619	0.0021544	622.306179195181	9.5849	0.11527	9.5849	9.5317	9.647	0	540	40	0.963152256458504	0.0262808772147128	0.963152256458504	390.057488700341	0	10.6432320523298						465	14	5	NaN	NaN	NaN	0.0018946	1	10698	88.181	83.978	1	257520			22805	1330	19249	19794	22805	22805		
YSYYDESQGEIYR	13	Unmodified	_YSYYDESQGEIYR_			0	0	0	Q9Y316	Q9Y316	Q9Y316	MEMO1	Protein MEMO1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	836.859917	1671.70528	2.4344	0.0020372	0.13629	0.00011406	2.5707	0.0021513	836.859904028091	8.352	0.15081	8.352	8.3076	8.4584	0	384	37	1.06790610341098	0.0240873003284932	1.06790610341098	431.258632280435	0	9.72731231876503						363	18	3	NaN	NaN	NaN	0.00020061	1	23654	76.255	73.584	1	106620			22806	3365	19250	19795	22806	22806		
YTAESSDTLCPR	12	Unmodified	_YTAESSDTLCPR_			0	0	0	Q9NSE4	Q9NSE4	Q9NSE4	IARS2	Isoleucine--tRNA ligase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	700.311548	1398.60854	2.2336	0.0015642	-0.35886	-0.00025131	1.8748	0.0013129	700.31166237874	4.9287	0.16846	4.9287	4.8401	5.0085	0	486	58	0.999498404980629	0.0383362142097218	0.999498404980629	404.280421229119	0	15.5063587413492						445	20	3	NaN	NaN	NaN	0.00067216	1	15391	90.142	58.002	1	108530			22807	3037	19251	19796	22807	22807		
YTAQVDAEEK	10	Unmodified	_YTAQVDAEEK_			0	0	0	O75947	O75947	O75947	ATP5H	ATP synthase subunit d, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	577.272218	1152.52988	1.6261	0.0009387	-0.2102	-0.00012134	1.4159	0.00081736	577.272122173588	3.3149	0.22178	3.3149	3.2439	3.4657	0	648	61	0.890187667287968	0.0406202211384199	0.890187667287968	360.817686231903	0	16.4644992780513						789	26	4	NaN	NaN	NaN	5.3732E-10	1	8123	166.66	146	1	278460			22808	372	19252	19797	22808	22808		
YTCHVQHEGLPEPLTLR	17	Unmodified	_YTCHVQHEGLPEPLTLR_			0	0	0	P01893	P01893	P01893	HLA-H	Putative HLA class I histocompatibility antigen, alpha chain H	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	513.259825	2049.01019	0.62571	0.00032115	1.76	0.00090335	2.3857	0.0012245	513.511258866211	8.7068	0.13331	8.7068	8.6357	8.769	0	639	40	0.896281965493857	0.0264122944165538	0.896281965493857	722.799644435302	0	21.2999901236285						414	16	4	NaN	NaN	NaN	0.005148	1	32531	55.604	46.851	1	89184			22809	492	19253	19798	22809	22809		
YTCHVQHEGLPK	12	Unmodified	_YTCHVQHEGLPK_			0	0	0	P04439;P01889	P04439	P04439	HLA-A;HLA-B	HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	734.853718	1467.69288	2.6046	0.001914	-4.3312	-0.0031828	-1.7265	-0.0012687	734.850342534924	3.0488	0.088656	3.0488	3.0134	3.102	0	453	28	1.02166545906632	0.0181266605748145	1.02166545906632	413.056149855145	0	7.3285521795035						129	11	3	NaN	NaN	NaN	0.00066986	1	17509	69.276	52.284	1	22825			22810	514	19254	19799	22810	22810		
YTCHVQHEGLPK	12	Unmodified	_YTCHVQHEGLPK_			0	0	0	P04439;P01889	P04439	P04439	HLA-A;HLA-B	HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.238237	1467.69288	0.30963	0.00015179	0.047963	2.3513E-05	0.35759	0.0001753	490.238181390927	3.0488	0.10638	3.0488	3.0134	3.1198	0	819	22	0.773912161060781	0.0143351345420983	0.773912161060781	469.332374109305	0	8.69341905494485						173	13	3	NaN	NaN	NaN	0.0025035	1	17511	79.889	74.393	1	43650			22811	514	19254	19799	22811	22811		
YTCHVQHEGLPK	12	Unmodified	_YTCHVQHEGLPK_			0	0	0	P04439;P01889	P04439	P04439	HLA-A;HLA-B	HLA class I histocompatibility antigen, A-3 alpha chain;HLA class I histocompatibility antigen, B-7 alpha chain	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	490.238237	1467.69288	0.86019	0.0004217	0.22417	0.00010989	1.0844	0.00053159	490.238248795486	3.04	0.16846	3.04	2.9602	3.1286	0	741	61	0.827064408645228	0.0408294930357924	0.827064408645228	501.566096699541	0	24.7606948601846						360	20	3	NaN	NaN	NaN	0.004337	1	17513	39.293	31.292	1	83449			22812	514	19254	19799	22812	22812		
YTDQGGEEEEDYESEEQLQHR	21	Unmodified	_YTDQGGEEEEDYESEEQLQHR_			0	0	0	O75208	O75208	O75208	COQ9	Ubiquinone biosynthesis protein COQ9, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	857.684514	2570.03171	2.6791	0.0022979	-0.83256	-0.00071408	1.8466	0.0015838	858.018401228568	5.9663	0.09758	5.9663	5.9307	6.0283	0	447	25	1.02569221487577	0.0161048002118316	1.02569221487577	619.526727499605	0	9.72743482651799						281	12	5	NaN	NaN	NaN	8.7092E-08	1	37109	100.56	100.51	1	80026			22813	313	19255	19800	22813	22813		
YTEFYHVPTHSDASK	15	Unmodified	_YTEFYHVPTHSDASK_			0	0	0	Q96HC4	Q96HC4	Q96HC4	PDLIM5	PDZ and LIM domain protein 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	594.609164	1780.80566	0.66227	0.00039379	1.8178	0.0010809	2.4801	0.0014747	594.610174890404	5.4962	0.079777	5.4962	5.4608	5.5405	0	648	34	0.890187667287968	0.022351963978809	0.890187667287968	538.960332740045	0	13.532901416298						180	10	2	NaN	NaN	NaN	5.883E-05	1	26698	106.11	89.12	1	74999			22814	2548	19256	19801	22814	22814		
YTEGVQSLNWTK	12	Unmodified	_YTEGVQSLNWTK_			0	0	0	Q9Y5B9	Q9Y5B9	Q9Y5B9	SUPT16H	FACT complex subunit SPT16	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.354074	1424.69359	1.7556	0.0012524	0.86356	0.00061602	2.6192	0.0018684	713.354682183723	9.5494	0.20393	9.5494	9.4696	9.6736	0	474	46	1.00756305028564	0.0302361592844221	1.00756305028564	407.46937036085	0	12.227829099391						648	24	5	NaN	NaN	NaN	1.272E-11	1	16221	147.19	107.86	1	300970			22815	3430	19257	19802	22815	22815		
YTEHSTVGLAQQWDQLDQLGMR	22	Unmodified	_YTEHSTVGLAQQWDQLDQLGMR_			0	0	0	Q13813	Q13813	Q13813	SPTAN1	Spectrin alpha chain, non-erythrocytic 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	859.411455	2575.21254	0.81915	0.00070399	-0.5141	-0.00044183	0.30505	0.00026216	859.745401653555	14.737	0.088715	14.737	14.701	14.79	0	513	46	0.981336640919867	0.0302905481075687	0.981336640919867	592.72917269671	0	18.2955479003613						426	11	5	NaN	NaN	NaN	1.1455E-08	1	37137	102.55	100.1	1	95096			22816	1703	19258	19803	22816	22816		
YTELEYIHALTLLHR	15	Unmodified	_YTELEYIHALTLLHR_			0	0	0	Q96A65	Q96A65	Q96A65	EXOC4	Exocyst complex component 4	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	624.671988	1870.99413	0.11808	7.3759E-05	-1.8471	-0.0011538	-1.7291	-0.0010801	624.670952939373	14.409	0.070942	14.409	14.382	14.453	1.7764E-15	642	19	0.894250814548268	0.0121877514530468	0.894250814548268	541.218893612202	0	7.37627659905525						125	9	4	NaN	NaN	NaN	0.00012198	1	28966	41.317	41.084	1	25984			22817	2471	19259	19804	22817	22817		
YTEMDYAR	8	Unmodified	_YTEMDYAR_			0	0	0	Q9UKD2	Q9UKD2	Q9UKD2	MRTO4	mRNA turnover protein 4 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	524.723849	1047.43315	1.3131	0.00068901	1.9374	0.0010166	3.2505	0.0017056	524.724944186406	4.7514	0.1596	4.7514	4.7159	4.8755	0	651	31	0.888155670855968	0.0203213763976985	0.888155670855968	360.420808119116	0	8.24658012518501						253	19	4	NaN	NaN	NaN	0.0025753	1	5402	75.243	47.539	1	81935			22818	3260	19260	19805	22818	22818		
YTEQITNEK	9	Unmodified	_YTEQITNEK_			0	0	0	Q16718	Q16718	Q16718	NDUFA5	NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	563.274761	1124.53497	1.6032	0.00090307	0.40513	0.0002282	2.0084	0.0011313	563.274809100621	3.3681	0.21292	3.3681	3.3237	3.5366	0	651	46	0.888155670855968	0.030475726379646	0.888155670855968	360.100002559723	0	12.356290127319						382	25	4	NaN	NaN	NaN	0.00013496	1	7382	91.783	58.387	1	138090			22819	1902	19261	19806	22819	22819		
YTFAAHMDGTYK	12	Unmodified	_YTFAAHMDGTYK_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.879939	1403.61799	-1.1121	-0.00052145	1.7393	0.00081553	0.62719	0.00029408	468.880904832829	6.986	0.10638	6.986	6.9505	7.0569	0	768	34	0.808687310729125	0.0224733988875652	0.808687310729125	490.630191317802	0	13.6345999862741						244	13	3	NaN	NaN	NaN	0.010148	1	15565	58.889	53.393	1	60155			22820	1832	19262	19807	22820	22820		
YTFAAHMDGTYK	12	Unmodified	_YTFAAHMDGTYK_			0	0	0	Q15363	Q15363	Q15363	TMED2	Transmembrane emp24 domain-containing protein 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.81627	1403.61799	1.7757	0.001248	0.67299	0.00047299	2.4487	0.001721	702.817018753996	6.9771	0.15969	6.9771	6.9417	7.1014	0	468	37	1.01159370163332	0.024180571015918	1.01159370163332	409.158465665938	0	9.78029550779615						335	19	3	NaN	NaN	NaN	1.0305E-05	1	15566	115.41	104.05	1	88663			22821	1832	19262	19807	22821	22821		
YTFNEDEGELPEWFVQEEK	19	Unmodified	_YTFNEDEGELPEWFVQEEK_			0	0	0	Q8IY81	Q8IY81	Q8IY81	FTSJ3	pre-rRNA processing protein FTSJ3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1195.02897	2388.04339	-0.050146	-5.9926E-05	0.90613	0.0010828	0.85598	0.0010229	1195.53168660178	16.75	0.13301	16.75	16.697	16.83	0	81	55	1.2692388538616	0.0356378456166904	1.2692388538616	511.297972132561	0	14.3562877385521						310	16	2	NaN	NaN	NaN	0.0005732	1	36283	69.224	68.35	1	136590			22822	2220	19263	19808	22822	22822		
YTFPCPYCPEK	11	Unmodified	_YTFPCPYCPEK_			0	0	0	Q9Y508	Q9Y508	Q9Y508	RNF114	E3 ubiquitin-protein ligase RNF114	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	731.312506	1460.61046	1.5257	0.0011157	-0.57768	-0.00042246	0.94799	0.00069327	731.813355053779	9.9839	0.27485	9.9839	9.8509	10.126	0	462	52	1.01562323939346	0.0342534486123975	1.01562323939346	410.631879117129	0	13.8491887782628						762	32	5	NaN	NaN	NaN	0.06336	1	17275	27.589	24.918	1	211660			22823	3420	19264	19809	22823	22823		
YTGEDFDEDLR	11	Unmodified	_YTGEDFDEDLR_			0	0	0	Q14204	Q14204	Q14204	DYNC1H1	Cytoplasmic dynein 1 heavy chain 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	680.288596	1358.56264	1.5531	0.0010565	2.3535	0.0016011	3.9066	0.0026576	680.290139263595	8.6357	0.15971	8.6357	8.5825	8.7422	0	501	28	0.98941132619024	0.0181617640607624	0.98941132619024	400.315823903313	0	7.34824976333829						307	19	4	NaN	NaN	NaN	0.00124	1	14139	67.881	62.974	1	159770			22824	1737	19265	19810	22824	22824		
YTHLVDQDTTSFDSAWGQESAQNTK	25	Unmodified	_YTHLVDQDTTSFDSAWGQESAQNTK_			0	0	0	P55081	P55081	P55081	MFAP1	Microfibrillar-associated protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	943.758125	2828.25255	1.7803	0.0016802	0.65441	0.0006176	2.4347	0.0022978	944.092999805638	10.64	0.088648	10.64	10.605	10.693	0	468	46	1.01159370163332	0.0302278047766038	1.01159370163332	610.710944543728	0	18.2488791466345						385	11	5	NaN	NaN	NaN	1.5364E-19	1	37949	141.84	135.09	1	85986			22825	1266	19266	19811	22825	22825		
YTIENPR	7	Unmodified	_YTIENPR_			0	0	0	Q7KZF4	Q7KZF4	Q7KZF4	SND1	Staphylococcal nuclease domain-containing protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	446.729792	891.445031	0.54873	0.00024513	1.6898	0.0007549	2.2386	0.001	446.73010184935	4.1662	0.28377	4.1662	4.0598	4.3435	0	738	70	0.829104889055312	0.0469702523439415	0.829104889055312	337.220281560165	0	19.1041229275869						856	33	3	NaN	NaN	NaN	0.0087429	1	2185	80.294	64.795	1	286270			22826	2108	19267	19812	22826	22826		
YTIGHAWTTDYGCSDSK	17	Unmodified	_YTIGHAWTTDYGCSDSK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	654.61599	1960.82614	0.40601	0.00026578	0.50109	0.00032802	0.9071	0.0005938	654.950654364303	8.3342	0.10646	8.3342	8.2987	8.4051	0	666	31	0.877991458330206	0.0203354810451108	0.877991458330206	531.199362230975	0	12.3033025655706						255	13	4	NaN	NaN	NaN	0.00010204	1	30925	80.815	80.196	1	57316			22827	1105	19268	19813	22827	22827		
YTIGHAWTTDYGCSDSK	17	Unmodified	_YTIGHAWTTDYGCSDSK_			0	0	0	P48147	P48147	P48147	PREP	Prolyl endopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	981.420347	1960.82614	1.9869	0.00195	-0.49641	-0.00048719	1.4905	0.0014628	981.921806592386	8.3342	0.062124	8.3342	8.2987	8.3608	0	204	31	1.18784641916898	0.0199104355287145	1.18784641916898	479.112893185052	0	8.03079103223672						140	8	3	NaN	NaN	NaN	0.00019555	1	30926	61.067	59.356	1	26707			22828	1105	19268	19813	22828	22828		
YTIHSQLEHLQSK	13	Unmodified	_YTIHSQLEHLQSK_			0	0	0	Q9BWJ5	Q9BWJ5	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	528.610728	1582.81036	-0.18513	-9.786E-05	0.79845	0.00042207	0.61333	0.00032421	528.611077505488	5.5051	0.14181	5.5051	5.4697	5.6115	0	738	34	0.829104889055312	0.0224452877647342	0.829104889055312	502.462299604432	0	13.6025140539235						387	17	4	NaN	NaN	NaN	7.6768E-08	1	21059	171.09	141.34	1	185470			22829	2780	19269	19814	22829	22829		
YTIHSQLEHLQSK	13	Unmodified	_YTIHSQLEHLQSK_			0	0	0	Q9BWJ5	Q9BWJ5	Q9BWJ5	SF3B5	Splicing factor 3B subunit 5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	792.412454	1582.81036	2.6284	0.0020828	-1.4586	-0.0011558	1.1698	0.00092693	792.41127662364	5.5051	0.17741	5.5051	5.4697	5.6471	0	309	34	1.11800162319566	0.0220056189808042	1.11800162319566	451.697393757761	0	8.89075698588317						428	21	4	NaN	NaN	NaN	1.2528E-16	1	21060	150.44	136.67	1	141060			22830	2780	19269	19814	22830	22830		
YTISQEAYDQR	11	Unmodified	_YTISQEAYDQR_			0	0	0	Q99426	Q99426	Q99426	TBCB	Tubulin-folding cofactor B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	687.320231	1372.62591	2.1967	0.0015098	-0.25754	-0.00017701	1.9392	0.0013328	687.320567335426	6.0372	0.15073	6.0372	5.9929	6.1436	0	507	37	0.985374541851584	0.0242274096445863	0.985374541851584	398.641407264755	0	9.80139862041642						407	18	4	NaN	NaN	NaN	8.0276E-25	1	14561	195.58	179.12	1	212080			22831	2637	19270	19815	22831	22831		
YTLDLTGGMFPLR	13	Unmodified	_YTLDLTGGMFPLR_			0	0	0	Q8WYP5	Q8WYP5	Q8WYP5	AHCTF1	Protein ELYS	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	742.384319	1482.75409	0.53316	0.00039581	1.0294	0.00076425	1.5626	0.0011601	742.384843834677	17.841	0.12413	17.841	17.805	17.929	0	441	28	1.02971785871157	0.0181141482765854	1.02971785871157	416.272193750758	0	7.32279835415852						205	15	3	NaN	NaN	NaN	0.0060416	1	17994	32.549	28.302	1	38795			22832	2401	19271	19816	22832	22832		
YTLLLGQDENSVIK	14	Unmodified	_YTLLLGQDENSVIK_			0	0	0	Q9H8H0	Q9H8H0	Q9H8H0	NOL11	Nucleolar protein 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	796.930145	1591.84574	1.7746	0.0014142	2.7241	0.0021709	4.4987	0.0035851	796.933065576433	13.327	0.10643	13.327	13.283	13.389	0	354	67	1.08796502040166	0.044081013383825	1.08796502040166	439.540284963968	0	17.8088273252332						332	13	3	NaN	NaN	NaN	0.00025648	1	21334	84.309	68.43	1	70108			22833	2925	19272	19817	22833	22833		
YTLNNWLATVTLGQAGMHATYYHK	24	Unmodified	_YTLNNWLATVTLGQAGMHATYYHK_			0	0	0	O96008	O96008	O96008	TOMM40	Mitochondrial import receptor subunit TOM40 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	689.093065	2752.34316	-0.22446	-0.00015467	-0.87327	-0.00060177	-1.0977	-0.00075644	689.34367687734	16.457	0.06205	16.457	16.431	16.493	0	546	19	0.959108205975751	0.0121338311529138	0.959108205975751	772.135886165288	0	9.76841446195704						120	8	4	NaN	NaN	NaN	0.051583	1	37768	7.1365	6.9029	1	21951			22834	469	19273	19818	22834	22834		
YTLNVLEDLGDGQK	14	Unmodified	_YTLNVLEDLGDGQK_			0	0	0	P13797	P13797	P13797	PLS3	Plastin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	782.896303	1563.77805	1.6994	0.0013305	0.3091	0.000242	2.0085	0.0015725	782.896786250822	15.18	0.2394	15.18	15.074	15.313	0	387	64	1.06589869032374	0.0421556968766068	1.06589869032374	430.692106318955	0	17.0336318507107						989	28	5	NaN	NaN	NaN	6.679E-17	1	20465	186.27	131.69	1	511450			22835	683	19274	19819	22835	22835		
YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	30	Unmodified	_YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK_			0	0	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1033.52492	3097.55293	1.0397	0.0010745	0.64304	0.00066459	1.6827	0.0017391	1033.8601305162	16.927	0.54979	16.927	16.723	17.273	0	129	142	1.23753038177212	0.0933932091562943	1.23753038177212	746.793616106006	0	56.3585778683669						4986	63	5	NaN	NaN	NaN	5.7425E-07	1	38355	119.56	115.69	1	1562000			22836	516	19275	19820	22836	22836		
YTLPPGVDPTQVSSSLSPEGTLTVEAPMPK	30	Oxidation (M)	_YTLPPGVDPTQVSSSLSPEGTLTVEAPM(Oxidation (M))PK_	YTLPPGVDPTQVSSSLSPEGTLTVEAPM(1)PK	YTLPPGVDPTQVSSSLSPEGTLTVEAPM(47)PK	0	1	0	P04792	P04792	P04792	HSPB1	Heat shock protein beta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1038.85656	3113.54785	1.4635	0.0015204	0.25299	0.00026282	1.7165	0.0017832	1039.52499903838	15.978	0.40789	15.978	15.828	16.236	0	189	136	1.1977968526266	0.0894312800005639	1.1977968526266	722.79962123719	0	53.966492873492						2390	47	5	NaN	NaN	NaN	0.00064179	1	38376	47.113	45.569	1	564840			22837	516	19275	19821	22837	22837	99	
YTPEEIAMATVTALR	15	Unmodified	_YTPEEIAMATVTALR_			0	0	0	P09972	P09972	P09972	ALDOC	Fructose-bisphosphate aldolase C	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	555.955396	1664.84436	-1.1635	-0.00064688	0.39553	0.0002199	-0.76801	-0.00042698	556.290055860212	18.825	0.11529	18.825	18.754	18.869	0	660	16	0.882057989648486	0.0101656231369728	0.882057989648486	534.325221115089	0	6.15804050774523						134	14	3	NaN	NaN	NaN	0.068842	1	23479	13.218	12.928	1	23989			22838	615	19276	19822	22838	22838		
YTPSGQAGAAASESLFVSNHAY	22	Unmodified	_YTPSGQAGAAASESLFVSNHAY_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1114.51636	2227.01818	0.79725	0.00088855	0.5568	0.00062056	1.3541	0.0015091	1115.01870701231	11.935	0.42567	11.935	11.828	12.254	0	78	133	1.27121832677567	0.0872223698696222	1.27121832677567	512.309622258458	0	35.1512076401012						2995	49	6	NaN	NaN	NaN	7.0693E-30	1	34957	213.56	205.91	1	1577800			22839	504	19277	19823	22839	22839		
YTPSGQAGAAASESLFVSNHAY	22	Unmodified	_YTPSGQAGAAASESLFVSNHAY_			0	0	0	P04075	P04075	P04075	ALDOA	Fructose-bisphosphate aldolase A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	743.346668	2227.01818	0.05543	4.1204E-05	2.0047	0.0014902	2.0602	0.0015314	743.682231958443	11.935	0.23055	11.935	11.882	12.112	0	495	43	0.993446994398923	0.0282496839404589	0.993446994398923	600.547143461689	0	17.0771738097641						595	27	4	NaN	NaN	NaN	0.0083038	1	34958	56.943	54.554	1	184950			22840	504	19277	19823	22840	22840		
YTPTQQGNMQVLVTYGGDPIPK	22	Unmodified	_YTPTQQGNMQVLVTYGGDPIPK_			0	0	0	O75369	O75369	O75369	FLNB	Filamin-B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1204.10175	2406.18895	0.53192	0.00064049	-0.88545	-0.0010662	-0.35353	-0.00042568	1204.60157875967	13.637	0.053207	13.637	13.611	13.664	0	66	28	1.27913350869533	0.0178079416067196	1.27913350869533	515.261432458924	0	7.17340718466687						76	7	3	NaN	NaN	NaN	0.0097061	1	36377	27.589	27.284	1	11839			22841	326	19278	19824	22841	22841		
YTPVQQGPVGVNVTYGGDPIPK	22	Unmodified	_YTPVQQGPVGVNVTYGGDPIPK_			0	0	0	P21333	P21333	P21333	FLNA	Filamin-A	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1143.59188	2285.1692	1.2765	0.0014598	-0.65091	-0.00074438	0.6256	0.00071543	1144.09259081318	12.263	0.088672	12.263	12.21	12.298	0	129	115	1.23753038177212	0.0753386903597333	1.23753038177212	498.654458958631	0	30.3572133931679						846	11	4	NaN	NaN	NaN	3.8421E-08	1	35524	89.489	82.808	1	190300			22842	792	19279	19825	22842	22842		
YTQGGLENLELSR	13	Unmodified	_YTQGGLENLELSR_			0	0	0	Q15006	Q15006	Q15006	EMC2	ER membrane protein complex subunit 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	740.375537	1478.73652	1.526	0.0011298	-5.2621	-0.0038959	-3.736	-0.0027661	740.372605975136	10.01	0.22164	10.01	9.9041	10.126	0	453	40	1.02166545906632	0.0261757253352226	1.02166545906632	413.027342235369	0	10.5820258190683						493	26	4	NaN	NaN	NaN	1.4888E-05	1	17859	78.864	71.307	1	168960			22843	1788	19280	19826	22843	22843		
YTQQIIQGIQQLVK	14	Unmodified	_YTQQIIQGIQQLVK_			0	0	0	Q8TCS8	Q8TCS8	Q8TCS8	PNPT1	Polyribonucleotide nucleotidyltransferase 1, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	830.475054	1658.93556	1.8057	0.0014996	-7.0266	-0.0058354	-5.221	-0.0043359	830.468909532533	15.97	0.12414	15.97	15.908	16.032	0	291	55	1.12999890578964	0.0359671056362876	1.12999890578964	456.36282715052	0	14.5257220414099						410	15	3	NaN	NaN	NaN	0.0039399	1	23312	57.293	48.918	1	105220			22844	2345	19281	19827	22844	22844		
YTSIPTSVEESGK	13	Unmodified	_YTSIPTSVEESGK_			0	0	0	Q9NVI1	Q9NVI1	Q9NVI1	FANCI	Fanconi anemia group I protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	699.343372	1396.67219	1.6501	0.001154	0.3782	0.00026449	2.0283	0.0014185	699.343392248608	6.6136	0.11529	6.6136	6.5781	6.6934	0	474	49	1.00756305028564	0.0322585904613818	1.00756305028564	407.547964261075	0	13.04823838939						310	14	4	NaN	NaN	NaN	0.0079854	1	15337	41.824	34.177	1	76200			22845	3067	19282	19828	22845	22845		
YTTPEDATPEPGEDPR	16	Unmodified	_YTTPEDATPEPGEDPR_			0	0	0	P63092;Q5JWF2	P63092	P63092	GNAS	Guanine nucleotide-binding protein G(s) subunit alpha isoforms short;Guanine nucleotide-binding protein G(s) subunit alpha isoforms XLas	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	887.891945	1773.76934	2.606	0.0023139	-1.5463	-0.001373	1.0597	0.00094088	887.890611193456	5.8421	0.13297	5.8421	5.78	5.913	0	387	70	1.06589869032374	0.046157799047351	1.06589869032374	430.244291831614	0	18.6313481233397						636	16	4	NaN	NaN	NaN	3.9042E-05	1	26497	65.408	63.424	1	151460			22846	1424	19283	19829	22846	22846		
YTTPSGEVR	9	Unmodified	_YTTPSGEVR_			0	0	0	P55786;A6NEC2	P55786	P55786	NPEPPS;NPEPPSL1	Puromycin-sensitive aminopeptidase;Puromycin-sensitive aminopeptidase-like protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	505.251089	1008.48762	0.89423	0.00045181	2.9078	0.0014692	3.802	0.001921	505.252637094526	3.4923	0.3991	3.4923	3.3858	3.7849	0	711	52	0.847456455381371	0.0346351908401327	0.847456455381371	344.076989810048	0	14.0622826460228						473	46	2	NaN	NaN	NaN	0.022406	1	4471	51.864	18.051	1	166620			22847	1277	19284	19830	22847	22847		
YTVAPTSLVVSPGQQTLLGLK	21	Unmodified	_YTVAPTSLVVSPGQQTLLGLK_			0	0	0	Q96SK2	Q96SK2	Q96SK2	TMEM209	Transmembrane protein 209	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1086.61736	2171.22017	-0.34139	-0.00037096	0.017725	1.926E-05	-0.32367	-0.0003517	1087.11911811779	16.466	0.06205	16.466	16.431	16.493	0	66	58	1.27913350869533	0.0376100012347553	1.27913350869533	515.58162593062	0	15.1595009090536						204	8	3	NaN	NaN	NaN	0.0018306	1	34330	42.495	32.584	1	35643			22848	2623	19285	19831	22848	22848		
YTVQDESHSEWVSCVR	16	Unmodified	_YTVQDESHSEWVSCVR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	661.29514	1980.86359	0.37825	0.00025014	-0.047504	-3.1414E-05	0.33075	0.00021872	661.62960158695	8.139	0.16853	8.139	8.0947	8.2632	0	699	49	0.85560534332665	0.0325910336061924	0.85560534332665	517.61862713603	0	19.7167142582243						679	20	6	NaN	NaN	NaN	7.0398E-09	1	31295	124.24	116.66	1	396010			22849	1435	19286	19832	22849	22849		
YTVQDESHSEWVSCVR	16	Unmodified	_YTVQDESHSEWVSCVR_			0	0	0	P63244	P63244	P63244	GNB2L1	Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	991.439071	1980.86359	2.8275	0.0028033	-0.49344	-0.00048922	2.334	0.0023141	991.438687510391	8.139	0.22175	8.139	8.0947	8.3164	0	258	58	1.15196821829984	0.0379209212295002	1.15196821829984	464.608535502269	0	15.2941577705482						749	26	6	NaN	NaN	NaN	1.9974E-08	1	31296	97.949	96.239	1	253930			22850	1435	19286	19832	22850	22850		
YVAEIEK	7	Unmodified	_YVAEIEK_			0	0	0	O14818	O14818	O14818	PSMA7	Proteasome subunit alpha type-7	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	426.229094	850.443634	0.38632	0.00016466	0.48678	0.00020748	0.8731	0.00037214	426.229424114757	4.0243	0.29262	4.0243	3.9711	4.2637	0	762	40	0.812773098473386	0.0265520848430444	0.812773098473386	330.819287018628	0	10.8073726764982						521	34	3	NaN	NaN	NaN	0.022887	1	1565	56.091	29.868	1	178320			22851	121	19287	19833	22851	22851		
YVALTSLLK	9	Unmodified	_YVALTSLLK_			0	0	0	O43747	O43747	O43747	AP1G1	AP-1 complex subunit gamma-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	504.310418	1006.60628	-0.39678	-0.0002001	-1.3891	-0.00070051	-1.7858	-0.00090061	504.310008892505	13.948	0.12414	13.948	13.912	14.036	0	675	28	0.871889544407995	0.0183108263146563	0.871889544407995	354.006028715932	0	7.4345918559672						202	15	3	NaN	NaN	NaN	0.02572	1	4446	37.722	18.235	1	51519			22852	225	19288	19834	22852	22852		
YVALVQEK	8	Unmodified	_YVALVQEK_			0	0	0	P53618	P53618	P53618	COPB1	Coatomer subunit beta	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	475.271293	948.528032	0.38778	0.0001843	-0.10527	-5.0034E-05	0.28251	0.00013427	475.271353236362	5.6381	0.16853	5.6381	5.576	5.7445	0	723	43	0.839303037468863	0.0285290397944454	0.839303037468863	341.056412277734	0	11.5929664538874						231	20	3	NaN	NaN	NaN	0.016056	1	3223	65.313	40.462	1	62356			22853	1240	19289	19835	22853	22853		
YVANLFPYK	9	Unmodified	_YVANLFPYK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.800217	1113.58588	0.51869	0.00028932	-1.27	-0.00070838	-0.75127	-0.00041906	557.799500025036	11.385	0.27494	11.385	11.243	11.518	0	651	40	0.888155670855968	0.0264122944165538	0.888155670855968	360.14288301409	0	10.7100592501168						480	32	2	NaN	NaN	NaN	0.021203	1	7084	51.43	0	1	202680			22854	1822	19290	19836	22854	22854		
YVANLFPYK	9	Unmodified	_YVANLFPYK_			0	0	0	Q15181	Q15181	Q15181	PPA1	Inorganic pyrophosphatase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	557.800217	1113.58588	0.14125	7.8788E-05	1.0336	0.00057654	1.1748	0.00065532	557.800008970584	11.704	0.41685	11.704	11.545	11.961	0	654	97	0.886123392477847	0.0649743767545046	0.886123392477847	359.318793699636	0	26.346798735931						1468	48	5	NaN	NaN	NaN	0.0003216	1	7085	81.32	0	1	784970			22855	1822	19290	19836	22855	22855		
YVASAVFGVIGSQK	14	Unmodified	_YVASAVFGVIGSQK_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	713.390459	1424.76637	1.803	0.0012862	1.3284	0.00094765	3.1314	0.0022339	713.391385894863	13.416	0.079821	13.416	13.38	13.46	-1.7764E-15	324	43	1.1079963157843	0.0280322312253412	1.1079963157843	448.085444671535	0	11.3365311913074						210	10	3	NaN	NaN	NaN	1.9048E-06	1	16237	134.2	116.47	1	48554			22856	3308	19291	19837	22856	22856		
YVASYLLAALGGNSSPSAK	19	Unmodified	_YVASYLLAALGGNSSPSAK_			0	0	0	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	623.663269	1867.96798	0.24404	0.0001522	-0.10878	-6.784E-05	0.13527	8.4361E-05	623.997381688964	16.714	0.16846	16.714	16.652	16.821	0	522	40	0.975277694896658	0.0262627024268471	0.975277694896658	590.265042603056	0	15.8949140823905						365	20	2	NaN	NaN	NaN	0.00016567	1	28884	89.359	85.377	1	363130			22857	529	19292	19838	22857	22857		
YVASYLLAALGGNSSPSAK	19	Unmodified	_YVASYLLAALGGNSSPSAK_			0	0	0	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.991266	1867.96798	0.06132	5.7333E-05	0.99149	0.00092703	1.0528	0.00098437	935.493652937705	16.714	0.19506	16.714	16.652	16.847	0	63	145	1.28111162701928	0.0951647575713537	1.28111162701928	516.911515763568	0	38.3977149578558						1998	23	5	NaN	NaN	NaN	4.6468E-20	1	28885	198.1	180	1	697910			22858	529	19292	19838	22858	22858		
YVASYLLAALGGNSSPSAK	19	Unmodified	_YVASYLLAALGGNSSPSAK_			0	0	0	P05387	P05387	P05387	RPLP2	60S acidic ribosomal protein P2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.991266	1867.96798	0.96299	0.00090039	0.16988	0.00015884	1.1329	0.0010592	934.991480241175	16.723	0.19506	16.723	16.652	16.847	0	261	97	1.14997238118939	0.0638536943272709	1.14997238118939	463.998575701063	0	25.7641172133728						1164	23	4	NaN	NaN	NaN	9.7989E-20	1	28886	173.26	163.24	1	469880			22859	529	19292	19838	22859	22859		
YVATLGVEVHPLVFHTNR	18	Unmodified	_YVATLGVEVHPLVFHTNR_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	513.781088	2051.09524	-0.37187	-0.00019106	0.77634	0.00039887	0.40447	0.00020781	513.781608282504	12.121	0.34586	12.121	12.032	12.378	0	681	25	0.867820189810857	0.0162774195650359	0.867820189810857	699.842091680887	0	13.1267092991292						246	40	2	NaN	NaN	NaN	0.021046	1	32560	41.317	39.607	1	78100			22860	1399	19293	19839	22860	22860		
YVATLGVEVHPLVFHTNR	18	Unmodified	_YVATLGVEVHPLVFHTNR_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	513.781088	2051.09524	-0.32398	-0.00016645	0.72444	0.0003722	0.40046	0.00020575	514.032237192515	11.899	0.27492	11.899	11.793	12.068	0	678	46	0.869855008346864	0.0305222862766339	0.869855008346864	701.483044368517	0	24.6142932936735						930	32	6	NaN	NaN	NaN	6.9367E-07	1	32561	121.69	112.89	1	1040600			22861	1399	19293	19839	22861	22861		
YVATLGVEVHPLVFHTNR	18	Unmodified	_YVATLGVEVHPLVFHTNR_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1026.5549	2051.09524	0.19103	0.00019611	0.64581	0.00066296	0.83685	0.00085907	1027.05698864155	11.89	0.18623	11.89	11.855	12.041	0	63	64	1.28111162701928	0.0415575705564091	1.28111162701928	516.571155664947	0	16.7568865945737						837	22	5	NaN	NaN	NaN	2.9769E-14	1	32562	151.08	140.1	1	228670			22862	1399	19293	19839	22862	22862		
YVATLGVEVHPLVFHTNR	18	Unmodified	_YVATLGVEVHPLVFHTNR_			0	0	0	P62826	P62826	P62826	RAN	GTP-binding nuclear protein Ran	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	684.705691	2051.09524	0.75096	0.00051418	1.2936	0.00088573	2.0445	0.0013999	685.041160379028	11.899	0.44341	11.899	11.846	12.29	0	522	76	0.975277694896658	0.0505261910996371	0.975277694896658	589.876772329554	0	30.5597335814373						1668	51	6	NaN	NaN	NaN	3.5985E-14	1	32563	172.92	138.73	1	1210600			22863	1399	19293	19839	22863	22863		
YVAVMPPHIGDQPLTGAYTVTLDGR	25	Unmodified	_YVAVMPPHIGDQPLTGAYTVTLDGR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	891.123134	2670.34757	1.0882	0.00096973	-0.042027	-3.7451E-05	1.0462	0.00093228	891.458098145393	15.136	0.15074	15.136	15.03	15.18	-1.7764E-15	465	25	1.01360860968299	0.0161136996889994	1.01360860968299	612.10440221831	0	9.73084326774347						141	18	3	NaN	NaN	NaN	0.0071679	1	37515	27.236	25.985	1	17374			22864	894	19294	19840	22864	22864		
YVAVMPPHIGDQPLTGAYTVTLDGR	25	Unmodified	_YVAVMPPHIGDQPLTGAYTVTLDGR_			0	0	0	P30043	P30043	P30043	BLVRB	Flavin reductase (NADPH)	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	891.123134	2670.34757	1.5722	0.0014011	0.047684	4.2492E-05	1.6199	0.0014435	891.457323069284	15.003	0.3458	15.003	14.967	15.313	0	393	31	1.0618830335572	0.0200865957702232	1.0618830335572	641.256667484542	0	12.1300209699871						615	40	5	NaN	NaN	NaN	4.3068E-10	1	37516	77.478	75.292	1	107670			22865	894	19294	19840	22865	22865		
YVAVPACEHVFIWDLR	16	Unmodified	_YVAVPACEHVFIWDLR_			0	0	0	Q9UNX4	Q9UNX4	Q9UNX4	WDR3	WD repeat-containing protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	659.001339	1973.98219	-0.63677	-0.00041963	-1.3826	-0.00091111	-2.0193	-0.0013307	659.334585808797	15.633	0.070922	15.633	15.597	15.668	0	666	43	0.877991458330206	0.0284578263810398	0.877991458330206	531.174511455591	0	17.2166504373346						341	9	4	NaN	NaN	NaN	0.00099286	1	31182	50.314	49.695	1	74269			22866	3308	19295	19841	22866	22866		
YVDIAIPCNNK	11	Unmodified	_YVDIAIPCNNK_			0	0	0	P08865	P08865	P08865	RPSA	40S ribosomal protein SA	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	653.826637	1305.63872	1.7668	0.0011552	-1.5277	-0.00099885	0.23915	0.00015636	653.826414224819	9.044	0.37238	9.044	8.9021	9.2745	0	537	55	0.965173861991602	0.0363863959780442	0.965173861991602	390.668752390126	0	14.7279453790672						1428	43	6	NaN	NaN	NaN	0.00045866	1	12519	90.761	67.708	1	959940			22867	592	19296	19842	22867	22867		
YVDQVLQLVYK	11	Unmodified	_YVDQVLQLVYK_			0	0	0	P11717	P11717	P11717	IGF2R	Cation-independent mannose-6-phosphate receptor	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	684.382103	1366.74965	0.73555	0.00050339	-2.0207	-0.0013829	-1.2851	-0.00087952	684.380244125826	14.95	0.20392	14.95	14.852	15.056	0	489	43	0.997481546940468	0.0282340678314075	0.997481546940468	403.556702800534	0	11.4228151444384						390	24	4	NaN	NaN	NaN	0.0005656	1	14408	79.311	64.163	1	104680			22868	657	19297	19843	22868	22868		
YVELFLNSTAGASGGAYEHR	20	Unmodified	_YVELFLNSTAGASGGAYEHR_			0	0	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1071.51617	2141.01778	0.62039	0.00066475	0.25164	0.00026963	0.87202	0.00093439	1072.01821874295	11.553	0.079871	11.553	11.509	11.589	0	63	40	1.28111162701928	0.0257190637601958	1.28111162701928	516.42525234624	0	10.3675384036368						263	10	3	NaN	NaN	NaN	2.9879E-07	1	33897	80.128	73.923	1	54643			22869	931	19298	19844	22869	22869		
YVELFLNSTAGASGGAYEHR	20	Unmodified	_YVELFLNSTAGASGGAYEHR_			0	0	0	P31943	P31943	P31943	HNRNPH1	Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	714.67987	2141.01778	1.6494	0.0011788	1.0406	0.00074369	2.69	0.0019225	715.014611634265	11.536	0.32819	11.536	11.429	11.758	0	459	55	1.01763759082241	0.0362558355413685	1.01763759082241	615.323609976986	0	21.9224130567127						1111	38	5	NaN	NaN	NaN	2.2375E-11	1	33898	110.9	104.05	1	514000			22870	931	19298	19844	22870	22870		
YVENPSQVLNCER	13	Unmodified	_YVENPSQVLNCER_			0	0	0	O75694	O75694	O75694	NUP155	Nuclear pore complex protein Nup155	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.377754	1606.74096	2.3357	0.0018788	-1.1127	-0.00089505	1.223	0.00098375	804.377094208992	8.6268	0.23953	8.6268	8.4672	8.7068	0	414	37	1.04781950764076	0.0241205492413457	1.04781950764076	423.287572268963	0	9.74397656820832						669	28	4	NaN	NaN	NaN	2.9199E-07	1	21802	103.76	98.932	1	185030			22871	352	19299	19845	22871	22871		
YVEPIEDVPCGNIVGLVGVDQFLVK	25	Unmodified	_YVEPIEDVPCGNIVGLVGVDQFLVK_			0	0	0	P13639	P13639	P13639	EEF2	Elongation factor 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	920.482328	2758.42515	1.8513	0.0017041	1.4494	0.0013342	3.3007	0.0030383	920.818578580036	19.924	0.10642	19.924	19.907	20.013	0	216	202	1.17988115188462	0.133905852235034	1.17988115188462	712.396271184952	0	80.8505413191057						1338	13	7	NaN	NaN	NaN	3.6871E-18	1	37783	163.25	157.92	1	899070			22872	679	19300	19846	22872	22872		
YVEQLLTLFNR	11	Unmodified	_YVEQLLTLFNR_			0	0	0	Q93034	Q93034	Q93034	CUL5	Cullin-5	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.385177	1394.7558	0.78609	0.00054899	-1.3942	-0.00097368	-0.6081	-0.00042469	698.384455803025	17.814	0.08866	17.814	17.779	17.867	0	474	31	1.00756305028564	0.0201560438819375	1.00756305028564	407.553460922353	0	8.15300386438111						180	11	3	NaN	NaN	NaN	0.00051159	1	15292	72.365	60.408	1	41357			22873	2453	19301	19847	22873	22873		
YVESLWK	7	Unmodified	_YVESLWK_			0	0	0	P47712	P47712	P47712	PLA2G4A	Cytosolic phospholipase A2;Phospholipase A2;Lysophospholipase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	462.744911	923.475269	-1.5699	-0.00072649	-2.1807	-0.0010091	-3.7507	-0.0017356	462.743691943952	8.9908	0.1951	8.9908	8.9198	9.1149	0	780	61	0.800512323802183	0.0408578970116692	0.800512323802183	325.419571770273	0	16.6093125035473						331	23	3	NaN	NaN	NaN	0.013723	1	2762	58.687	40.992	1	116070			22874	1098	19302	19848	22874	22874		
YVEVYEINNEDVDALMK	17	Unmodified	_YVEVYEINNEDVDALMK_			0	0	0	Q12849	Q12849	Q12849	GRSF1	G-rich sequence factor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1022.48261	2042.95067	1.583	0.0016186	1.0627	0.0010866	2.6457	0.0027052	1022.48355819094	15.171	0.14192	15.171	15.118	15.26	0	177	49	1.2057522832638	0.0318173641955646	1.2057522832638	486.197713873925	0	12.8297743641867						556	17	5	NaN	NaN	NaN	1.0289E-06	1	32396	99.668	94.851	1	137160			22875	1600	19303	19849	22875	22875		
YVFTDISYSIPHR	13	Unmodified	_YVFTDISYSIPHR_			0	0	0	P82650	P82650	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	533.271824	1596.79364	-0.72255	-0.00038531	-0.73842	-0.00039378	-1.461	-0.00077909	533.271361882415	12.467	0.14187	12.467	12.423	12.564	0	720	40	0.841341816837976	0.0265078208425806	0.841341816837976	509.839568843048	0	16.0633118179512						236	17	2	NaN	NaN	NaN	0.014169	1	21474	44.57	43.518	1	106000			22876	1469	19304	19850	22876	22876		
YVFTDISYSIPHR	13	Unmodified	_YVFTDISYSIPHR_			0	0	0	P82650	P82650	P82650	MRPS22	28S ribosomal protein S22, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	799.404098	1596.79364	1.8445	0.0014745	1.447	0.0011567	3.2915	0.0026312	799.405348323088	12.458	0.097526	12.458	12.423	12.52	0	330	49	1.10399226369747	0.0320544938914422	1.10399226369747	446.003411159253	0	12.9497407623903						176	12	2	NaN	NaN	NaN	2.7489E-07	1	21477	110.88	102.88	1	48326			22877	1469	19304	19850	22877	22877		
YVGVSSDSVGGFR	13	Unmodified	_YVGVSSDSVGGFR_			0	0	0	Q14677	Q14677	Q14677	CLINT1	Clathrin interactor 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	665.325316	1328.63608	1.4431	0.00096016	0.65916	0.00043855	2.1023	0.0013987	665.325420825839	8.5559	0.23959	8.5559	8.4495	8.6891	0	525	43	0.973257487423603	0.028284867590345	0.973257487423603	393.869309453743	0	11.4466535421072						471	28	4	NaN	NaN	NaN	3.3375E-05	1	13237	83.438	79.545	1	195570			22878	1763	19305	19851	22878	22878		
YVHLFPK	7	Unmodified	_YVHLFPK_			0	0	0	O75643	O75643	O75643	SNRNP200	U5 small nuclear ribonucleoprotein 200 kDa helicase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	452.257988	902.501424	0.53626	0.00024253	0.10638	4.8112E-05	0.64264	0.00029064	452.257982440544	6.3831	0.15959	6.3831	6.3299	6.4895	0	684	40	0.86578508874114	0.0264599929662752	0.86578508874114	352.073724842556	0	10.7600239413799						325	19	3	NaN	NaN	NaN	0.019064	1	2379	49.406	27.479	1	112250			22879	350	19306	19852	22879	22879		
YVIHTVGPIAYGEPSASQAAELR	23	Unmodified	_YVIHTVGPIAYGEPSASQAAELR_			0	0	0	Q9BQ69	Q9BQ69	Q9BQ69	MACROD1	O-acetyl-ADP-ribose deacetylase MACROD1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	810.420168	2428.23867	1.3007	0.0010541	0.61661	0.00049971	1.9173	0.0015538	810.755037805021	11.695	0.16846	11.695	11.642	11.811	0	507	64	0.985374541851584	0.0424126440707223	0.985374541851584	595.361398069712	0	25.6256377623987						943	20	4	NaN	NaN	NaN	2.1834E-09	1	36479	86.952	84.206	1	235690			22880	2693	19307	19853	22880	22880		
YVIWSADMSHVALLAK	16	Unmodified	_YVIWSADMSHVALLAK_			0	0	0	P53621	P53621	P53621	COPA	Coatomer subunit alpha;Xenin;Proxenin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	902.47674	1802.93893	1.2564	0.0011339	0.5989	0.00054049	1.8553	0.0016744	902.978408417271	15.464	0.071059	15.464	15.429	15.5	0	141	34	1.2295923935727	0.0218369546358563	1.2295923935727	496.256081949524	0	8.81326332689201						232	9	4	NaN	NaN	NaN	0.00010908	1	27297	50.116	46.828	1	58314			22881	1241	19308	19854	22881	22881		
YVIYIER	7	Unmodified	_YVIYIER_			0	0	0	P61254;Q9UNX3	P61254	P61254	RPL26;RPL26L1	60S ribosomal protein L26;60S ribosomal protein L26-like 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	478.26601	954.517468	-0.17752	-8.49E-05	-1.9133	-0.00091506	-2.0908	-0.00099996	478.265457289918	8.8931	0.22183	8.8931	8.831	9.0528	0	723	67	0.839303037468863	0.0448438238456479	0.839303037468863	341.02585197848	0	18.2209554239845						664	26	4	NaN	NaN	NaN	0.031334	1	3327	56.091	49.328	1	332800			22882	1339	19309	19855	22882	22882		
YVLEDGPEEDRK	12	Unmodified	_YVLEDGPEEDRK_			0	0	1	Q15813	Q15813	Q15813	TBCE	Tubulin-specific chaperone E	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	483.900056	1448.67834	-0.94851	-0.00045898	1.6451	0.00079605	0.69656	0.00033707	483.900883349352	4.6982	0.097492	4.6982	4.6539	4.7514	0	801	25	0.78619514174348	0.0163704683781356	0.78619514174348	476.839634801406	0	9.92894479816709						150	12	3	NaN	NaN	NaN	0.0036899	1	16936	48.785	30.278	1	32335			22883	1870	19310	19856	22883	22883		
YVLGMQELFR	10	Unmodified	_YVLGMQELFR_			0	0	0	Q96J01	Q96J01	Q96J01	THOC3	THO complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.328816	1254.64308	0.63515	0.00039908	-1.2241	-0.00076914	-0.58896	-0.00037006	628.328014268853	15.73	0.18621	15.73	15.686	15.872	0	561	49	0.948993180460448	0.0323792954262402	0.948993180460448	384.282803672106	0	13.1115867674474						562	22	4	NaN	NaN	NaN	7.8838E-05	1	11062	79.059	72.368	1	192450			22884	2564	19311	19857	22884	22884		
YVLHCQGTEEEK	12	Unmodified	_YVLHCQGTEEEK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	746.840473	1491.66639	2.5532	0.0019068	-2.2323	-0.0016672	0.32087	0.00023964	746.838946835048	3.1552	0.17737	3.1552	3.1198	3.2971	0	474	40	1.00756305028564	0.0262082910405103	1.00756305028564	407.293433721987	0	10.5943393287879						412	21	4	NaN	NaN	NaN	7.4968E-08	1	18276	129.69	95.494	1	89475			22885	1392	19312	19858	22885	22885		
YVLHCQGTEEEK	12	Unmodified	_YVLHCQGTEEEK_			0	0	0	P62495	P62495	P62495	ETF1	Eukaryotic peptide chain release factor subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	498.229408	1491.66639	-0.066828	-3.3296E-05	1.2596	0.00062756	1.1928	0.00059427	498.230248574215	3.1552	0.19509	3.1552	3.1198	3.3149	0	810	31	0.78005493425781	0.0204716360591192	0.78005493425781	472.986685412762	0	12.4129863928005						413	23	4	NaN	NaN	NaN	2.1012E-06	1	18277	144.47	125.15	1	122340			22886	1392	19312	19858	22886	22886		
YVLINWVGEDVPDAR	15	Unmodified	_YVLINWVGEDVPDAR_			0	0	0	Q16643	Q16643	Q16643	DBN1	Drebrin	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	873.446494	1744.87843	2.0126	0.0017579	-1.3939	-0.0012175	0.6187	0.0005404	873.445021979759	16.067	0.26603	16.067	15.952	16.218	0	318	67	1.11199926528787	0.0440021704183331	1.11199926528787	448.91018061084	0	17.7635209719759						822	31	4	NaN	NaN	NaN	1.6095E-08	1	25752	101.64	79.501	1	214390			22887	1897	19313	19859	22887	22887		
YVLVAGITPTPLGEGK	16	Unmodified	_YVLVAGITPTPLGEGK_			0	0	0	Q6UB35	Q6UB35	Q6UB35	MTHFD1L	Monofunctional C1-tetrahydrofolate synthase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	807.958706	1613.90286	2.2853	0.0018464	-1.2527	-0.0010121	1.0326	0.00083431	807.957827195577	14.028	0.097535	14.028	13.992	14.09	0	348	49	1.09197348738011	0.0320589101536728	1.09197348738011	441.107721642013	0	12.9503444723196						335	12	4	NaN	NaN	NaN	8.1802E-05	1	22023	72.846	62.825	1	105470			22888	2083	19314	19860	22888	22888		
YVMTTTTLER	10	Unmodified	_YVMTTTTLER_			0	0	0	P05198	P05198	P05198	EIF2S1	Eukaryotic translation initiation factor 2 subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	607.807913	1213.60127	1.4905	0.00090596	0.3565	0.00021668	1.847	0.0011226	607.80780333731	7.2698	0.18621	7.2698	7.2077	7.394	0	579	49	0.936845902828289	0.0324062107488191	0.936845902828289	379.503531210671	0	13.127315148848						342	22	2	NaN	NaN	NaN	1.577E-05	1	9832	133.98	100.16	1	221080			22889	527	19315	19861	22889	22889		
YVNMQDPEMDMK	12	Unmodified	_YVNMQDPEMDMK_			0	0	0	O00217	O00217	O00217	NDUFS8	NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	750.812012	1499.60947	1.5591	0.0011706	0.88581	0.00066508	2.4449	0.0018357	750.813007208981	8.8133	0.17759	8.8133	8.7599	8.9375	0	447	40	1.02569221487577	0.0261648835876145	1.02569221487577	414.601697734368	0	10.5762771707893						499	21	5	NaN	NaN	NaN	2.8653E-07	1	18507	87.942	66.854	1	170890			22890	62	19316	19862	22890	22890		
YVNSIWDLLK	10	Unmodified	_YVNSIWDLLK_			0	0	0	Q13618	Q13618	Q13618	CUL3	Cullin-3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.842613	1249.67067	0.19581	0.00012255	-1.917	-0.0011997	-1.7212	-0.0010772	625.841927327955	18.523	0.070945	18.523	18.497	18.568	0	579	31	0.936845902828289	0.0202538779292779	0.936845902828289	379.380350818739	0	8.20190736923968						157	9	3	NaN	NaN	NaN	0.00071012	1	10918	50.834	31.578	1	40670			22891	1695	19317	19863	22891	22891		
YVPGSSGSSNTLPTADPFTGAGR	23	Unmodified	_YVPGSSGSSNTLPTADPFTGAGR_			0	0	0	Q9Y263	Q9Y263	Q9Y263	PLAA	Phospholipase A-2-activating protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1120.03492	2238.05529	1.3256	0.0014847	-0.86185	-0.0009653	0.46376	0.00051943	1120.53532217784	11.704	0.070926	11.704	11.669	11.74	0	141	61	1.2295923935727	0.0396899589037651	1.2295923935727	495.518940738698	0	15.9948341391503						366	9	3	NaN	NaN	NaN	2.6799E-06	1	35076	77.325	76.758	1	86552			22892	3330	19318	19864	22892	22892		
YVQDFHPR	8	Unmodified	_YVQDFHPR_			0	0	0	O43819	O43819	O43819	SCO2	Protein SCO2 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	354.510286	1060.50903	-0.42291	-0.00014992	0.39635	0.00014051	-0.026556	-9.4145E-06	354.510195969313	3.6874	0.097506	3.6874	3.6608	3.7583	0	909	19	0.712342960434231	0.0123396214770952	0.712342960434231	433.537226431083	0	7.50998545297375						82	12	2	NaN	NaN	NaN	0.026484	1	5734	38.322	26.673	1	16918			22893	236	19319	19865	22893	22893		
YVQDFHPR	8	Unmodified	_YVQDFHPR_			0	0	0	O43819	O43819	O43819	SCO2	Protein SCO2 homolog, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	531.261791	1060.50903	1.2453	0.00066157	1.1639	0.00061835	2.4092	0.0012799	531.262906191891	3.6874	0.10639	3.6874	3.6164	3.7228	0	654	28	0.886123392477847	0.0182930452073933	0.886123392477847	359.53856376067	0	7.42227917297606						125	13	2	NaN	NaN	NaN	0.058794	1	5735	24.851	21.243	1	29246			22894	236	19319	19865	22894	22894		
YVQLPADEVDTQLLQDAAR	19	Unmodified	_YVQLPADEVDTQLLQDAAR_			0	0	0	Q9Y333	Q9Y333	Q9Y333	LSM2	U6 snRNA-associated Sm-like protein LSm2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1073.04476	2144.07496	1.2064	0.0012945	-0.24705	-0.00026509	0.95937	0.0010294	1073.54598160969	15.296	0.15958	15.296	15.242	15.402	-1.7764E-15	117	91	1.24546401832526	0.0594615768735969	1.24546401832526	502.050833967267	0	23.9691663662353						1130	19	5	NaN	NaN	NaN	8.3763E-11	1	33939	86.798	78.799	1	341670			22895	3368	19320	19866	22895	22895		
YVSPQDVTTMQTCNTK	16	Unmodified	_YVSPQDVTTMQTCNTK_			0	0	0	Q9H0J9	Q9H0J9	Q9H0J9	PARP12	Poly [ADP-ribose] polymerase 12	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	936.926951	1871.83935	1.9362	0.001814	0.68411	0.00064096	2.6203	0.002455	936.927013274505	7.5181	0.10641	7.5181	7.4472	7.5536	8.8818E-16	300	25	1.12400150285141	0.0159985790763961	1.12400150285141	453.512755029426	0	6.45511563381933						105	13	2	NaN	NaN	NaN	0.034219	1	28971	20.966	18.487	1	19851			22896	2847	19321	19867	22896	22896		
YVVTSVSWWSHK	12	Unmodified	_YVVTSVSWWSHK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	493.585743	1477.7354	-1.4409	-0.00071118	-0.6665	-0.00032897	-2.1074	-0.0010402	493.585336051797	11.314	0.12419	11.314	11.27	11.394	0	792	37	0.792332785124922	0.0245454517391362	0.792332785124922	480.472949701999	0	14.8844346974881						387	15	4	NaN	NaN	NaN	2.8637E-05	1	17818	111.61	103.61	1	189460			22897	1280	19322	19868	22897	22897		
YVVTSVSWWSHK	12	Unmodified	_YVVTSVSWWSHK_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	739.874976	1477.7354	1.5562	0.0011514	-0.53648	-0.00039693	1.0198	0.00075449	739.87495701862	11.314	0.097597	11.314	11.27	11.367	0	396	31	1.05987478976334	0.0200838253150546	1.05987478976334	428.476850103834	0	8.11931210379271						188	12	3	NaN	NaN	NaN	0.00034265	1	17819	99.855	87.259	1	35930			22898	1280	19322	19868	22898	22898		
YVVVTGITPTPLGEGK	16	Unmodified	_YVVVTGITPTPLGEGK_			0	0	0	P11586	P11586	P11586	MTHFD1	C-1-tetrahydrofolate synthase, cytoplasmic;Methylenetetrahydrofolate dehydrogenase;Methenyltetrahydrofolate cyclohydrolase;Formyltetrahydrofolate synthetase;C-1-tetrahydrofolate synthase, cytoplasmic, N-terminally processed	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	815.956163	1629.89777	2.1871	0.0017846	-0.44841	-0.00036588	1.7387	0.0014187	815.956001504477	12.502	0.13297	12.502	12.458	12.591	0	354	46	1.08796502040166	0.0300780138159316	1.08796502040166	439.451776785171	0	12.1491374866999						412	16	5	NaN	NaN	NaN	1.0077E-08	1	22491	140.57	133.01	1	273930			22899	656	19323	19869	22899	22899		
YVWLVYEQDRPLK	13	Unmodified	_YVWLVYEQDRPLK_			0	0	1	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	570.306757	1707.89844	0.19974	0.00011392	0.3112	0.00017748	0.51094	0.00029139	570.306782699295	12.325	0.24827	12.325	12.236	12.485	0	699	124	0.85560534332665	0.0833582758830353	0.85560534332665	518.193239429566	0	50.4855367606118						1349	29	6	NaN	NaN	NaN	1.8908E-05	1	24705	108.93	105.64	1	1206200			22900	903	19324	19870	22900	22900		
YVWLVYEQDRPLK	13	Unmodified	_YVWLVYEQDRPLK_			0	0	1	P30086	P30086	P30086	PEBP1	Phosphatidylethanolamine-binding protein 1;Hippocampal cholinergic neurostimulating peptide	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	854.956497	1707.89844	2.2976	0.0019644	1.4708	0.0012575	3.7685	0.0032219	855.459300151235	12.325	0.19511	12.325	12.263	12.458	0	255	76	1.15396378101328	0.0498959645511332	1.15396378101328	465.930596215082	0	20.1462618624151						1233	23	5	NaN	NaN	NaN	1.0624E-06	1	24706	153.33	137.72	1	1263600			22901	903	19324	19870	22901	22901		
YVYNYEAESSSGVPGTADSR	20	Unmodified	_YVYNYEAESSSGVPGTADSR_			0	0	0	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840	CON__ENSEMBL:ENSBTAP00000032840			TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1076.4769	2150.93926	2.5659	0.0027622	-1.2411	-0.001336	1.3248	0.0014261	1076.97716563403	8.3785	0.11532	8.3785	8.3253	8.4406	0	210	82	1.18386433251387	0.053791453867615	1.18386433251387	477.2099890038	0	21.6830749974152						666	14	5	NaN	NaN	NaN	8.8127E-11	1	34029	136.39	131.58	1	191170		+	22902	22	19325	19871	22902	22902		
YWDLMNLSEK	10	Unmodified	_YWDLMNLSEK_			0	0	0	Q9BZE4	Q9BZE4	Q9BZE4	GTPBP4	Nucleolar GTP-binding protein 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	649.807913	1297.60127	0.7366	0.00047865	-0.072306	-4.6985E-05	0.66429	0.00043166	649.808000741854	14.95	0.1065	14.95	14.914	15.021	0	537	37	0.965173861991602	0.0242609491796308	0.965173861991602	390.694082281535	0	9.8206236702847						274	13	3	NaN	NaN	NaN	0.00077325	1	12281	74.269	57.811	1	67708			22903	2808	19326	19872	22903	22903		
YWEAFLPEAK	10	Unmodified	_YWEAFLPEAK_			0	0	0	O60749;Q13596	O60749;Q13596	O60749	SNX2;SNX1	Sorting nexin-2;Sorting nexin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	627.313689	1252.61282	0.99692	0.00062538	0.48395	0.00030359	1.4809	0.00092897	627.314099791017	14.187	0.1596	14.187	14.081	14.24	0	534	34	0.967195187796614	0.0222315106769172	0.967195187796614	391.66037936896	0	9.00252815101629						394	19	4	NaN	NaN	NaN	7.1859E-05	1	10986	63.397	58.858	1	106810			22904	278;1689	19327	19873	22904	22904		
YWLEEAECR	9	Unmodified	_YWLEEAECR_			0	0	0	P55884	P55884	P55884	EIF3B	Eukaryotic translation initiation factor 3 subunit B	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	628.274238	1254.53392	0.95586	0.00060054	1.9484	0.0012241	2.9043	0.0018247	628.275503533396	9.4608	0.133	9.4608	9.3987	9.5317	0	531	43	0.969216233931596	0.0283005258697965	0.969216233931596	392.472231929479	0	11.4599510037519						223	16	4	NaN	NaN	NaN	4.9129E-05	1	11048	110.22	95.683	1	103320			22905	1280	19328	19874	22905	22905		
YWLMLNEK	8	Unmodified	_YWLMLNEK_			0	0	0	Q9H7Z7	Q9H7Z7	Q9H7Z7	PTGES2	Prostaglandin E synthase 2;Prostaglandin E synthase 2 truncated form	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	548.778428	1095.5423	-0.19528	-0.00010717	1.5948	0.00087519	1.3995	0.00076802	548.779183914101	13.212	0.12417	13.212	13.159	13.283	0	633	31	0.900343422309015	0.0203044701825483	0.900343422309015	365.158447632376	0	8.23502302359515						218	15	3	NaN	NaN	NaN	0.028342	1	6594	42.835	27.336	1	57005			22906	2919	19329	19875	22906	22906		
YWQQVIDMNDYQR	13	Unmodified	_YWQQVIDMNDYQR_			0	0	0	O60701	O60701	O60701	UGDH	UDP-glucose 6-dehydrogenase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	879.898854	1757.78315	3.4093	0.0029999	-0.082306	-7.2421E-05	3.327	0.0029274	879.899181511953	12.848	0.11529	12.848	12.795	12.91	0	324	40	1.1079963157843	0.0260209682813848	1.1079963157843	447.268314155713	0	10.5039650855482						440	14	4	NaN	NaN	NaN	7.6856E-08	1	26080	119.94	106.76	1	176680			22907	275	19330	19876	22907	22907		
YWSQQIEESTTVVTTQSAEVGAAETTLTELR	31	Unmodified	_YWSQQIEESTTVVTTQSAEVGAAETTLTELR_			0	0	0	P05783	P05783	P05783	KRT18	Keratin, type I cytoskeletal 18	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	1143.56164	3427.66309	1.4149	0.001618	0.19916	0.00022775	1.614	0.0018457	1143.89582589599	18.444	0.15081	18.444	18.408	18.559	0	210	31	1.18386433251387	0.0199159054005791	1.18386433251387	714.100757693672	0	12.0131697071316						430	18	6	NaN	NaN	NaN	6.2436E-22	1	38621	121.74	118.68	1	99455			22908	536	19331	19877	22908	22908		
YWVPVEYEEEEK	12	Unmodified	_YWVPVEYEEEEK_			0	0	0	Q13045	Q13045	Q13045	FLII	Protein flightless-1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	800.364304	1598.71405	1.1421	0.00091408	1.2261	0.0009813	2.3682	0.0018954	800.365693090421	11.722	0.12411	11.722	11.669	11.793	0	384	37	1.06790610341098	0.0240906221251305	1.06790610341098	431.420456199898	0	9.73230432354154						469	15	5	NaN	NaN	NaN	0.034842	1	21525	30.918	29.661	1	117330			22909	1621	19332	19878	22909	22909		
YYADGEDAYAMK	12	Unmodified	_YYADGEDAYAMK_			0	0	0	P41227;Q9BSU3	P41227	P41227	NAA10;NAA11	N-alpha-acetyltransferase 10;N-alpha-acetyltransferase 11	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	698.789918	1395.56528	1.6381	0.0011447	-0.24382	-0.00017038	1.3943	0.00097434	698.790069143308	6.5959	0.14188	6.5959	6.5604	6.7023	0	483	40	1.00151498427745	0.026215536116896	1.00151498427745	405.104741728184	0	10.6039731353225						386	17	4	NaN	NaN	NaN	0.00066453	1	15299	62.271	58.663	1	142040			22910	1032	19333	19879	22910	22910		
YYDDTYPSVK	10	Unmodified	_YYDDTYPSVK_			0	0	0	P61923	P61923	P61923	COPZ1	Coatomer subunit zeta-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	625.782418	1249.55028	1.6627	0.0010405	0.78203	0.00048938	2.4447	0.0015299	625.782757974746	6.2944	0.2217	6.2944	6.2146	6.4363	0	507	52	0.985374541851584	0.0343292904819641	0.985374541851584	399.032669930168	0	13.9018290568843						590	26	4	NaN	NaN	NaN	0.00040087	1	10896	88.181	80.534	1	191610			22911	1353	19334	19880	22911	22911		
YYDQICSIEPK	11	Unmodified	_YYDQICSIEPK_			0	0	0	Q8WUM4	Q8WUM4	Q8WUM4	PDCD6IP	Programmed cell death 6-interacting protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	708.32921	1414.64387	2.0362	0.0014423	-1.6727	-0.0011848	0.36345	0.00025744	708.32925726995	8.9642	0.32824	8.9642	8.8133	9.1415	0	450	85	1.02367897599655	0.0564369689351736	1.02367897599655	414.015110707619	0	22.8252787148939						1543	38	6	NaN	NaN	NaN	0.071619	1	15915	36.514	32.311	1	536920			22912	2370	19335	19881	22912	22912		
YYDVMSDEEIER	12	Unmodified	_YYDVMSDEEIER_			0	0	0	O15460	O15460	O15460	P4HA2	Prolyl 4-hydroxylase subunit alpha-2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	774.829771	1547.64499	2.3366	0.0018105	2.6751	0.0020727	5.0117	0.0038832	774.831942284965	9.7534	0.097536	9.7534	9.7268	9.8243	0	423	31	1.04178812298108	0.0201032305459359	1.04178812298108	420.988378268242	0	8.12375015494382						145	12	2	NaN	NaN	NaN	0.020417	1	19963	19.324	15.341	1	40331			22913	177	19336	19882	22913	22913		
YYEAADTVTQFDNVR	15	Unmodified	_YYEAADTVTQFDNVR_			0	0	0	Q8TAQ2	Q8TAQ2	Q8TAQ2	SMARCC2	SWI/SNF complex subunit SMARCC2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	896.412848	1790.81114	2.6975	0.0024181	0.092863	8.3244E-05	2.7904	0.0025013	896.41313544793	10.959	0.12416	10.959	10.924	11.048	0	327	31	1.10599442759226	0.020020262712183	1.10599442759226	446.395762628241	0	8.08047510770774						315	15	4	NaN	NaN	NaN	2.8897E-07	1	26986	110.91	105.75	1	72206			22914	2333	19337	19883	22914	22914		
YYEGYYAAGPGYGGR	15	Unmodified	_YYEGYYAAGPGYGGR_			0	0	0	Q93052	Q93052	Q93052	LPP	Lipoma-preferred partner	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	822.359887	1642.70522	2.7162	0.0022337	-0.43256	-0.00035572	2.2836	0.0018779	822.359014023616	8.0148	0.070983	8.0148	7.9881	8.0591	0	348	34	1.09197348738011	0.0220420155259144	1.09197348738011	441.041897368236	0	8.90264503829053						177	9	3	NaN	NaN	NaN	0.00024298	1	22820	58.889	56.588	1	37643			22915	2455	19338	19884	22915	22915		
YYFNNPEDGFFK	12	Unmodified	_YYFNNPEDGFFK_			0	0	0	Q9P0I2	Q9P0I2	Q9P0I2	EMC3	ER membrane protein complex subunit 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	770.840799	1539.66705	1.3569	0.0010459	1.1104	0.00085596	2.4673	0.0019019	770.841616923675	14.063	0.1064	14.063	14.028	14.134	0	435	37	1.03374239103424	0.024143864458734	1.03374239103424	417.756281354502	0	9.7570256587008						251	13	3	NaN	NaN	NaN	5.4675E-05	1	19705	76.85	72.322	1	64225			22916	3144	19339	19885	22916	22916		
YYGGAEVVDEIELLCQR	17	Unmodified	_YYGGAEVVDEIELLCQR_			0	0	0	P34897	P34897	P34897	SHMT2	Serine hydroxymethyltransferase, mitochondrial	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1007.48295	2012.95134	1.2979	0.0013076	-0.66256	-0.00066752	0.63537	0.00064013	1007.9836678187	17.477	0.21281	17.477	17.388	17.601	0	213	58	1.18187287897418	0.0378428307662209	1.18187287897418	476.616722251122	0	15.260969501352						713	25	5	NaN	NaN	NaN	4.4977E-19	1	31849	142.08	135.56	1	187230			22917	954	19340	19886	22917	22917		
YYGGTEFIDELETLCQK	17	Unmodified	_YYGGTEFIDELETLCQK_			0	0	0	P34896	P34896	P34896	SHMT1	Serine hydroxymethyltransferase, cytosolic	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1033.47479	2064.93502	0.82349	0.00085106	1.1037	0.0011407	1.9272	0.0019917	1033.9765822185	18.169	0.062065	18.169	18.142	18.204	0	162	49	1.21569043230068	0.0317999037994188	1.21569043230068	490.169861467539	0	12.8218122195329						298	8	4	NaN	NaN	NaN	2.9238E-10	1	32783	126.21	123.5	1	72682			22918	953	19341	19887	22918	22918		
YYGLQILENVIK	12	Unmodified	_YYGLQILENVIK_			0	0	0	O14980	O14980	O14980	XPO1	Exportin-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	726.908485	1451.80242	0.91874	0.00066784	-0.49624	-0.00036072	0.4225	0.00030712	726.908027814026	18.745	0.19508	18.745	18.648	18.843	0	435	61	1.03374239103424	0.0402231257358656	1.03374239103424	417.98151983719	0	16.2637455651392						636	23	5	NaN	NaN	NaN	4.5847E-11	1	17038	141.29	122.79	1	319110			22919	135	19342	19888	22919	22919		
YYLHDDREGEGSDK	14	Unmodified	_YYLHDDREGEGSDK_			0	0	1	Q9Y2W1	Q9Y2W1	Q9Y2W1	THRAP3	Thyroid hormone receptor-associated protein 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	561.913024	1682.71724	-0.43148	-0.00024246	2.2999	0.0012924	1.8685	0.0010499	561.91422850293	2.8538	0.088679	2.8538	2.8272	2.9158	0	774	25	0.804600385996946	0.0163499748034793	0.804600385996946	487.360954517193	0	9.90347440199457						143	11	3	NaN	NaN	NaN	0.0027492	1	23976	58.476	57.595	1	34377			22920	3355	19343	19889	22920	22920		
YYMNQVEETR	10	Unmodified	_YYMNQVEETR_			0	0	0	P52888	P52888	P52888	THOP1	Thimet oligopeptidase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	666.798077	1331.5816	1.3642	0.00090962	1.3982	0.00093229	2.7623	0.0018419	666.799332706904	5.8775	0.15968	5.8775	5.8332	5.9929	0	531	37	0.969216233931596	0.0242508800099599	0.969216233931596	392.224913152673	0	9.81390836511071						335	19	3	NaN	NaN	NaN	3.2865E-05	1	13332	81.163	72.69	1	100060			22921	1225	19344	19890	22921	22921		
YYNDYGDIIK	10	Unmodified	_YYNDYGDIIK_			0	0	0	Q8N3U4;Q8WVM7	Q8N3U4	Q8N3U4	STAG2;STAG1	Cohesin subunit SA-2;Cohesin subunit SA-1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	632.298236	1262.58192	1.3223	0.00083611	3.3515	0.0021191	4.6738	0.0029552	632.299084206506	9.5849	0.2128	9.5849	9.514	9.7268	0	537	34	0.965173861991602	0.0222376640579702	0.965173861991602	390.808194845148	0	9.0042444064278						257	25	3	NaN	NaN	NaN	0.0088771	1	11288	40.502	15.683	1	99254			22922	2249	19345	19891	22922	22922		
YYNSDVHR	8	Unmodified	_YYNSDVHR_			0	0	0	P19623	P19623	P19623	SRM	Spermidine synthase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	527.241055	1052.46756	0.56608	0.00029846	0.84574	0.00044591	1.4118	0.00074437	527.241179182149	2.1266	0.11526	2.1266	2.1089	2.2242	0	711	16	0.847456455381371	0.0101868175914577	0.847456455381371	343.883394790186	0	4.13363706561466						78	14	2	NaN	NaN	NaN	0.0035868	1	5520	53.679	50.539	1	14827			22923	771	19346	19892	22923	22923		
YYPTEDVPR	9	Unmodified	_YYPTEDVPR_			0	0	0	Q02878	Q02878	Q02878	RPL6	60S ribosomal protein L6	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	570.272021	1138.52949	2.004	0.0011429	1.2992	0.00074089	3.3032	0.0018837	570.27272548462	6.2411	0.41679	6.2411	6.1081	6.5249	0	567	130	0.944945209309785	0.087194487117629	0.944945209309785	383.068108856193	0	35.3474751274025						1936	48	5	NaN	NaN	NaN	7.1997E-05	1	7752	113.14	71.061	1	1426900			22924	1533	19347	19893	22924	22924		
YYQHLYSIHLAEQPEDCTMQLADHIK	26	Unmodified	_YYQHLYSIHLAEQPEDCTMQLADHIK_			0	0	0	Q14203	Q14203	Q14203	DCTN1	Dynactin subunit 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	4	801.628578	3202.4852	1.1896	0.00095362	0.51737	0.00041474	1.707	0.0013684	801.879943270586	12.556	0.070945	12.556	12.529	12.6	0	420	22	1.04379886199097	0.0140732315426386	1.04379886199097	839.72297295471	0	11.3217366490735						113	9	3	NaN	NaN	NaN	3.0024E-05	1	38463	56.748	56.644	1	36855			22925	1736	19348	19894	22925	22925		
YYQLFLDSLRDPNK	14	Unmodified	_YYQLFLDSLRDPNK_			0	0	1	Q96EK5	Q96EK5	Q96EK5	KIAA1279	KIF1-binding protein	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	886.454319	1770.89408	1.7764	0.0015747	-0.94405	-0.00083686	0.83232	0.00073781	886.954706322336	13.682	0.13298	13.682	13.646	13.779	0	213	34	1.18187287897418	0.0219090010853469	1.18187287897418	477.062656747221	0	8.84356215494614						204	16	2	NaN	NaN	NaN	0.017869	1	26445	76.255	58.524	1	84221			22926	2512	19349	19895	22926	22926		
YYQTIGNHASYYK	13	Unmodified	_YYQTIGNHASYYK_			0	0	0	Q9UNM6	Q9UNM6	Q9UNM6	PSMD13	26S proteasome non-ATPase regulatory subunit 13	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	804.37808	1606.74161	2.0647	0.0016608	-0.10492	-8.4396E-05	1.9597	0.0015764	804.377317106497	5.2568	0.12418	5.2568	5.2036	5.3278	0	408	28	1.0518390438467	0.018084171566231	1.0518390438467	424.911338887235	0	7.30546141810038						214	15	4	NaN	NaN	NaN	4.8327E-06	1	21803	108.24	92.628	1	50671			22927	3300	19350	19896	22927	22927		
YYSFFDLNPK	10	Unmodified	_YYSFFDLNPK_			0	0	0	Q96AC1;Q9BQL6	Q96AC1	Q96AC1	FERMT2;FERMT1	Fermitin family homolog 2;Fermitin family homolog 1	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	647.311146	1292.60774	0.81022	0.00052446	4.7668	0.0030856	5.577	0.0036101	647.314150248146	15.109	0.14187	15.109	15.038	15.18	0	513	28	0.981336640919867	0.0181718123582917	0.981336640919867	397.252780473855	0	7.35609237907784						258	17	3	NaN	NaN	NaN	0.0079527	1	12150	60.892	59.389	1	68514			22928	2472	19351	19897	22928	22928		
YYSIASSSK	9	Unmodified	_YYSIASSSK_			0	0	0	P16435	P16435	P16435	POR	NADPH--cytochrome P450 reductase	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	503.248015	1004.48148	0.95592	0.00048106	2.0371	0.0010251	2.993	0.0015062	503.249120151697	4.2549	0.15959	4.2549	4.1751	4.3347	0	696	31	0.857641857947968	0.0203637344294858	0.857641857947968	348.231076138152	0	8.26835244671747						287	19	4	NaN	NaN	NaN	0.0013369	1	4380	54.436	48.206	1	79451			22929	728	19352	19898	22929	22929		
YYTEFPTVLDITAEDPSK	18	Unmodified	_YYTEFPTVLDITAEDPSK_			0	0	0	O14929	O14929	O14929	HAT1	Histone acetyltransferase type B catalytic subunit	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	1045.00424	2087.99392	1.2505	0.0013068	0.82168	0.00085866	2.0722	0.0021654	1045.50646806126	17.114	0.23941	17.114	17.025	17.264	0	171	64	1.20972836110953	0.0417345195513319	1.20972836110953	487.729956903118	0	16.8262364316847						1334	28	5	NaN	NaN	NaN	5.4725E-26	1	33150	150.85	133.58	1	475980			22930	126	19353	19899	22930	22930		
YYTGNYDQYVK	11	Unmodified	_YYTGNYDQYVK_			0	0	0	Q9UG63	Q9UG63	Q9UG63	ABCF2	ATP-binding cassette sub-family F member 2	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	707.319699	1412.62485	2.1725	0.0015367	1.8029	0.0012753	3.9755	0.0028119	707.321186463154	7.8729	0.1596	7.8729	7.8108	7.9704	0	471	49	1.00957851518677	0.0322496762146521	1.00957851518677	408.317978840391	0	13.0431882336438						455	19	4	NaN	NaN	NaN	8.0391E-07	1	15832	94.804	92.645	1	181020			22931	3202	19354	19900	22931	22931		
YYTSASGDEMVSLK	14	Unmodified	_YYTSASGDEMVSLK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.855789	1549.69702	2.6118	0.0020264	0.99753	0.00077394	3.6094	0.0028004	775.856841712128	8.8399	0.46136	8.8399	8.7422	9.2036	0	411	94	1.04982941439551	0.0622642162087288	1.04982941439551	424.232903464041	0	25.1607821822664						2411	53	6	NaN	NaN	NaN	4.1019E-24	1	20029	200.76	192.29	1	2937800			22932	567	19355	19901	22932	22932		
YYTSASGDEMVSLK	14	Unmodified	_YYTSASGDEMVSLK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.855789	1549.69702	2.0654	0.0016024	3.0249	0.0023469	5.0903	0.0039493	776.358828545618	10.418	0.14185	10.418	10.33	10.472	0	417	55	1.04580932352505	0.0361508951957743	1.04580932352505	422.60838925811	0	14.6084675717265						217	17	2	NaN	NaN	NaN	0.044859	1	20030	42.061	30.705	1	73264			22933	567	19355	19901	22933	22933		
YYTSASGDEMVSLK	14	Unmodified	_YYTSASGDEMVSLK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.855789	1549.69702	1.0886	0.00084458	6.9916	0.0054245	8.0802	0.0062691	775.859830931366	9.2834	0.062104	9.2834	9.2479	9.31	0	402	10	1.05585747106793	0.00602639371162339	1.05585747106793	426.668800328315	0	2.43524741331208						25	8	2	NaN	NaN	NaN	6.5458E-05	1	20031	81.799	64.068	1	12065			22934	567	19355	19901	22934	22934		
YYTSASGDEMVSLK	14	Unmodified	_YYTSASGDEMVSLK_			0	0	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	775.855789	1549.69702	2.2176	0.0017205	5.8917	0.0045711	8.1093	0.0062916	775.860489001761	9.6736	0.35468	9.6736	9.5051	9.8598	0	408	31	1.0518390438467	0.0200949105761223	1.0518390438467	425.044970226276	0	8.120292470121						299	41	2	NaN	NaN	NaN	0.0011975	1	20032	58.476	55.374	1	156650			22935	567	19355	19901	22935	22935		
YYTSASGDEMVSLK	14	Oxidation (M)	_YYTSASGDEM(Oxidation (M))VSLK_	YYTSASGDEM(1)VSLK	YYTSASGDEM(150)VSLK	0	1	0	P07900	P07900	P07900	HSP90AA1	Heat shock protein HSP 90-alpha	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	783.853246	1565.69194	2.5285	0.001982	-4.5034	-0.00353	-1.9749	-0.001548	783.84783578721	6.6845	0.31033	6.6845	6.6136	6.9239	0	420	85	1.04379886199097	0.0563435048746228	1.04379886199097	421.757837106716	0	22.7661818921759						980	36	3	NaN	NaN	NaN	2.6359E-08	1	20510	148.76	134.76	1	575820			22936	567	19355	19902	22936	22936	146	
YYVLNALK	8	Unmodified	_YYVLNALK_			0	0	0	Q6P2Q9	Q6P2Q9	Q6P2Q9	PRPF8	Pre-mRNA-processing-splicing factor 8	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	492.28166	982.548768	0.14743	7.2579E-05	-0.69102	-0.00034018	-0.54359	-0.0002676	492.28140480473	10.693	0.15962	10.693	10.631	10.791	0	681	31	0.867820189810857	0.0203496003822382	0.867820189810857	352.470091449364	0	8.26510559664302						310	19	3	NaN	NaN	NaN	0.028214	1	3900	33.813	28.906	1	83140			22937	2064	19356	19903	22937	22937		
YYVTIIDAPGHR	12	Unmodified	_YYVTIIDAPGHR_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	468.91386	1403.71975	-0.21323	-9.9988E-05	0.10319	4.8386E-05	-0.11005	-5.1602E-05	468.913934451693	9.0528	0.59416	9.0528	8.9375	9.5317	0	750	76	0.820941264895493	0.0510617297770926	0.820941264895493	498.064315440806	0	30.9791048082942						2223	68	6	NaN	NaN	NaN	5.9896E-08	1	15581	184.04	157.09	1	4890700			22938	1446	19357	19904	22938	22938		
YYVTIIDAPGHR	12	Unmodified	_YYVTIIDAPGHR_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.867151	1403.71975	2.5873	0.0018185	1.2295	0.00086419	3.8168	0.0026827	702.868166200025	9.044	0.6651	9.044	8.9287	9.5938	0	399	118	1.0578662689527	0.0784189632828349	1.0578662689527	427.873987654	0	31.7180304470219						2670	76	6	NaN	NaN	NaN	1.0447E-11	1	15583	162.49	129.07	1	4478100			22939	1446	19357	19904	22939	22939		
YYVTIIDAPGHR	12	Unmodified	_YYVTIIDAPGHR_			0	0	0	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	702.867151	1403.71975	1.882	0.0013228	9.8618	0.0069315	11.744	0.0082543	702.873756643907	9.6204	0.23939	9.6204	9.5228	9.7622	0	408	34	1.0518390438467	0.0221059271192692	1.0518390438467	425.436126773629	0	8.94115888488801						259	28	3	NaN	NaN	NaN	0.025295	1	15585	37.749	30.192	1	64067			22940	1446	19357	19904	22940	22940		
YYVTIIDAPGHRDFIK	16	Unmodified	_YYVTIIDAPGHRDFIK_			0	0	1	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	3	636.671988	1906.99413	1.2551	0.00079911	0.12655	8.057E-05	1.3817	0.00087968	637.006391106243	10.791	0.1064	10.791	10.755	10.862	0	609	34	0.916577990479294	0.0223086119453004	0.916577990479294	554.65474819131	0	13.4997541611793						344	13	5	NaN	NaN	NaN	0.00012654	1	29759	80.623	74.518	1	113830			22941	1446	19358	19905	22941	22941		
YYVTIIDAPGHRDFIK	16	Unmodified	_YYVTIIDAPGHRDFIK_			0	0	1	P68104;Q5VTE0	P68104	P68104	EEF1A1;EEF1A1P5	Elongation factor 1-alpha 1;Putative elongation factor 1-alpha-like 3	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	954.504343	1906.99413	1.8965	0.0018102	0.092563	8.8352E-05	1.9891	0.0018986	955.006027915672	10.782	0.044283	10.782	10.773	10.817	0	168	31	1.21171599086077	0.0198776635699456	1.21171599086077	488.837536925072	0	8.01916304864051						61	6	2	NaN	NaN	NaN	0.0023897	1	29760	55.578	50.762	1	9603.4			22942	1446	19358	19905	22942	22942		
YYYAVVDCDSPETASK	16	Unmodified	_YYYAVVDCDSPETASK_			0	0	0	Q9H501	Q9H501	Q9H501	ESF1	ESF1 homolog	TIMS-MULTI-MSMS	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811	20221230_TIMS03_PoKo_MA_HeLa_Evo05_21min_IM0713_S1-B1_1_34811.d	NaN	2	934.406374	1866.7982	2.2028	0.0020583	0.66087	0.00061752	2.8636	0.0026758	934.9090419935	8.68	0.10651	8.68	8.6446	8.7511	0	276	43	1.13998907770044	0.0279705629566351	1.13998907770044	459.972568482647	0	11.2858025894611						301	13	4	NaN	NaN	NaN	2.0664E-06	1	28856	93.772	92.062	1	59998			22943	2898	19359	19906	22943	22943		
